ID arath_genenames arath_Entries arath_Entry_names arath_Protein_names disruptions tair_disruptions lloyd2012_LOFs arath_functions arath_misc pathway unipathway BioCyc Reactome BRENDA kegg_pws ec arath_masses arath_protein_names arath_GO devstages tissues tair araport Annotation orysj_genenames orysj_Entries orysj_Entry_names orysj_Protein_names orysj_disruptions orysj_functions orysj_misc ENOG411E3J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9C6 LFG1 F4JIE8 LFG1_ARATH Protein LIFEGUARD 1 (AtLFG1) DISRUPTION PHENOTYPE: Delayed development of the powdery mildew fungus E.cruciferarum. Increased cell death upon A.alternata f.sp. lycopersici (AAL) toxin treatment. {ECO:0000269|PubMed:23888068}. FUNCTION: (Microbial infection) Facilitates the development of the powdery mildew fungus E.cruciferarum. {ECO:0000269|PubMed:23888068}.; FUNCTION: (Microbial infection) May prevent cell death upon A.alternata f.sp. lycopersici (AAL) toxin treatment. {ECO:0000269|PubMed:23888068}. 26272 Protein LIFEGUARD 1 (AtLFG1) integral component of membrane [GO:0016021]; defense response to fungus [GO:0050832]; negative regulation of cell death [GO:0060548] TISSUE SPECIFICITY: Expressed at very low in leaves. {ECO:0000269|PubMed:23888068}. locus:2130170; AT4G14730 Pfam:UPF0005 NA NA NA NA NA NA NA ENOG411E5H0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0341800 protein A0A0P0WWG4 A0A0P0WWG4_ORYSJ Os06g0341800 OSNPB_060341800 ENOG411EMN6 NATA1 Q9ZV06,Q9ZV05 NATAL_ARATH,NATA1_ARATH Probable acetyltransferase NATA1-like (EC 2.3.1.-),L-ornithine N5-acetyltransferase NATA1 (EC 2.3.1.-) (Protein N-ACETYLTRANSFERASE ACTIVITY 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are unable to produce N5-acetylornithine in response to methyl jasmonate. {ECO:0000269|PubMed:21917546}. FUNCTION: Acetyltransferase that converts ornithine to N5-acetylornithine, which is likely used in plant defense. {ECO:0000269|PubMed:21917546}. ARA:AT2G39020-MONOMER;,ARA:AT2G39030-MONOMER;MetaCyc:AT2G39030-MONOMER; 2.3.1.- 26440,25821 Probable acetyltransferase NATA1-like (EC 2.3.1.-),L-ornithine N5-acetyltransferase NATA1 (EC 2.3.1.-) (Protein N-ACETYLTRANSFERASE ACTIVITY 1) chloroplast [GO:0009507]; N-acetyltransferase activity [GO:0008080]; ornithine metabolic process [GO:0006591],chloroplast [GO:0009507]; N-acetyltransferase activity [GO:0008080]; defense response [GO:0006952]; ornithine metabolic process [GO:0006591]; response to jasmonic acid [GO:0009753] locus:2064900;,locus:2064930; AT2G39020,AT2G39030 Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EMN2 Q9ZU86,A0A1P8B282 Q9ZU86_ARATH,A0A1P8B282_ARATH At2g48030 (DNAse I-like superfamily protein) (Expressed protein),DNAse I-like superfamily protein 49197,36294 At2g48030 (DNAse I-like superfamily protein) (Expressed protein),DNAse I-like superfamily protein locus:2066347; AT2G48030 Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EMN3 RKF1 Q9FXF2,A0A1P8ATN8 RKF1_ARATH,A0A1P8ATN8_ARATH Probable LRR receptor-like serine/threonine-protein kinase RFK1 (EC 2.7.11.1) (Receptor-like kinase in flowers 1),Receptor-like kinase in flowers 1 2.7.11.1 113463,94782 Probable LRR receptor-like serine/threonine-protein kinase RFK1 (EC 2.7.11.1) (Receptor-like kinase in flowers 1),Receptor-like kinase in flowers 1 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transducer, downstream of receptor, with serine/threonine kinase activity [GO:0004702],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] DEVELOPMENTAL STAGE: First detected in early flower primordia and during stamen development. Later expressed in anthers and in pollen. {ECO:0000269|PubMed:9687063}. TISSUE SPECIFICITY: Mostly expressed in flower buds, especially in stamens. {ECO:0000269|PubMed:9687063}. locus:2203847; AT1G29750 Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411EMNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein 41-like NA NA NA NA NA NA NA ENOG411EMNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EMNJ Q8GUH8,F4JYU5,B3H5H6 Q8GUH8_ARATH,F4JYU5_ARATH,B3H5H6_ARATH At5g54130 (Calcium-binding endonuclease/exonuclease/phosphatase family) (Uncharacterized protein At5g54130),Calcium-binding endonuclease/exonuclease/phosphatase family 50535,40921,40749 At5g54130 (Calcium-binding endonuclease/exonuclease/phosphatase family) (Uncharacterized protein At5g54130),Calcium-binding endonuclease/exonuclease/phosphatase family calcium ion binding [GO:0005509]; endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527],endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527] locus:2166547; AT5G54130 calcium-binding protein At1g02270 Endonuclease/exonuclease/phosphatase family protein, putative, expressed (Os10g0203000 protein) (cDNA clone:J023099P14, full insert sequence) Q33A95 Q33A95_ORYSJ Os10g0203000 LOC_Os10g13550 Os10g0203000 OsJ_31001 OSNPB_100203000 ENOG411EMNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Timeless protein C terminal region Os05g0210500 protein A0A0P0WJ92 A0A0P0WJ92_ORYSJ Os05g0210500 OSNPB_050210500 ENOG411EMNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calmodulin-binding heat-shock protein Os06g0256300 protein (Putative calmodulin-binding heat-shock protein) Q652G4 Q652G4_ORYSJ Os06g0256300 Os06g0256300 OSNPB_060256300 P0624H09.11 ENOG411EAJM UGT75B1,UGT75B2 Q9LR44,Q9ZVY5,A0A1P8AP70 U75B1_ARATH,U75B2_ARATH,A0A1P8AP70_ARATH UDP-glycosyltransferase 75B1 (EC 2.4.1.-) ((Uridine 5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl transferase 1) (IAA-Glu synthase 1) (Indole-3-acetate beta-glucosyltransferase 1) (EC 2.4.1.121),UDP-glycosyltransferase 75B2 (EC 2.4.1.-) ((Uridine 5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl transferase 2) (IAA-Glu synthase 2) (Indole-3-acetate beta-glucosyltransferase 2) (EC 2.4.1.121),Glycosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but strong reduction in 4-aminobenzoate glucosyltransferase activity. {ECO:0000269|PubMed:18385129}. Extracts from mutant leaves flowers and siliques show a 95% reduction in p-acylglucosyltransferase activity relative to wild type extracts and p-ABA-glucose formation is severely diminished when assayed in a radiotracer feeding experiment using mutant and wild type leaves. Though the ratio of glucosylated to non-glucosylated pABA is much lower in mutant plants they have comparable levels of total pABA. FUNCTION: Possesses low catalytic activity on indole-3-acetic acid (IAA) in vitro. May transfer UDP-glucose from sucrose synthase to callose synthase for the synthesis of callose at the forming cell plate during cytokinesis. Has high affinity for 4-aminobenzoate. Catalyzes the formation of 4-aminobenzoate glucose ester which represents a storage form of 4-aminobenzoate in the vacuole. Is the major source of this activity in the plant. Also active in vitro on benzoates and benzoate derivatives. {ECO:0000269|PubMed:11042207, ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:18385129}.,FUNCTION: Possesses low catalytic activity in vitro. Also active as glucosyltransferase in vitro on benzoates and benzoate derivatives. {ECO:0000269|PubMed:11042207, ECO:0000269|PubMed:11641410}. PATHWAY: Plant hormone metabolism; auxin conjugation. ARA:AT1G05560-MONOMER;MetaCyc:AT1G05560-MONOMER;,ARA:AT1G05530-MONOMER;MetaCyc:AT1G05530-MONOMER; 2.4.1.-; 2.4.1.121,2.4.1.- 52813,51190,58585 UDP-glycosyltransferase 75B1 (EC 2.4.1.-) ((Uridine 5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl transferase 1) (IAA-Glu synthase 1) (Indole-3-acetate beta-glucosyltransferase 1) (EC 2.4.1.121),UDP-glycosyltransferase 75B2 (EC 2.4.1.-) ((Uridine 5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl transferase 2) (IAA-Glu synthase 2) (Indole-3-acetate beta-glucosyltransferase 2) (EC 2.4.1.121),Glycosyltransferase (EC 2.4.1.-) cytoskeleton [GO:0005856]; Golgi apparatus [GO:0005794]; perinuclear region of cytoplasm [GO:0048471]; phragmoplast [GO:0009524]; indole-3-acetate beta-glucosyltransferase activity [GO:0047215]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucose:4-aminobenzoate acylglucosyltransferase activity [GO:0080002]; UDP-glucosyltransferase activity [GO:0035251]; UDP-glycosyltransferase activity [GO:0008194]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; para-aminobenzoic acid metabolic process [GO:0046482]; response to salicylic acid [GO:0009751],Golgi apparatus [GO:0005794]; indole-3-acetate beta-glucosyltransferase activity [GO:0047215]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2201031;,locus:2201066; AT1G05560,AT1G05530 udp-glucosyl transferase 75b2 NA NA NA NA NA NA NA ENOG411EAJN O65631,A0A1P8B989,A0A1P8B991,A0A1P8B9A0,A0A1P8B979,A0A1P8B9B5,F4JNW8 O65631_ARATH,A0A1P8B989_ARATH,A0A1P8B991_ARATH,A0A1P8B9A0_ARATH,A0A1P8B979_ARATH,A0A1P8B9B5_ARATH,F4JNW8_ARATH Uncharacterized protein AT4g35940 (Uncharacterized protein T19K4.70),Uncharacterized protein 52721,33318,48404,28887,46245,43973,46372 Uncharacterized protein AT4g35940 (Uncharacterized protein T19K4.70),Uncharacterized protein locus:2125389; AT4G35940 NA NA NA NA NA NA NA NA ENOG411EAJH GNL1 Q9FLY5 GNL1_ARATH ARF guanine-nucleotide exchange factor GNL1 (Protein ENDOPLASMIC RETICULUM MORPHOLOGY 1) (Protein GNOM-like 1) DISRUPTION PHENOTYPE: Slightly abnormal Golgi stacks with laterally expanded cisternae. Abnormal formation of spherical bodies in the endoplasmic reticulum. {ECO:0000269|PubMed:17653190, ECO:0000269|PubMed:19933201}. Disorganized ER morphology-I. Hara-Nishimura-2009 FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Acts as the major regulator of retrograde Golgi to endoplasmic reticulum trafficking but is also involved in the endocytosis process. Could function redundantly with GNOM. Regulates vesicle trafficking required for the coordinated polar localization of auxin efflux carriers which in turn determines the direction of auxin flow. Mediates the endocytosis of PIN2 from plasma membrane to endosomal compartments. Required for maintenance of endoplasmic reticulum morphology. {ECO:0000269|PubMed:17653190, ECO:0000269|PubMed:17653191, ECO:0000269|PubMed:19933201, ECO:0000269|PubMed:20036441, ECO:0000269|PubMed:21118984}. R-ATH-421837;R-ATH-6807878;R-ATH-6811434; 161954 ARF guanine-nucleotide exchange factor GNL1 (Protein ENDOPLASMIC RETICULUM MORPHOLOGY 1) (Protein GNOM-like 1) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; trans-Golgi network [GO:0005802]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; endocytosis [GO:0006897]; ER body organization [GO:0080119]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2175728; AT5G39500 Sec7 domain NA NA NA NA NA NA NA ENOG411EAJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase NA NA NA NA NA NA NA ENOG411EAJJ CBSDUF1,CBSDUF2 Q67XQ0,Q4V3C7,A0A1P8B407 Y4424_ARATH,Y4423_ARATH,A0A1P8B407_ARATH DUF21 domain-containing protein At4g14240 (CBS domain-containing protein CBSDUF1),DUF21 domain-containing protein At4g14230 (CBS domain-containing protein CBSDUF2),CBS domain protein with a domain protein (DUF21) 53582,53492,42631 DUF21 domain-containing protein At4g14240 (CBS domain-containing protein CBSDUF1),DUF21 domain-containing protein At4g14230 (CBS domain-containing protein CBSDUF2),CBS domain protein with a domain protein (DUF21) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] locus:2129540;,locus:2129535; AT4G14240,AT4G14230 Domain of unknown function DUF21 NA NA NA NA NA NA NA ENOG411EAJK HO4,HO3 Q9LQC0,Q9C9L4 HMOX4_ARATH,HMOX3_ARATH Heme oxygenase 4, chloroplastic (EC 1.14.14.18),Heme oxygenase 3, chloroplastic (EC 1.14.14.18) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:16428602}. No visible phenotype when grown in the dark.,No visible phenotype. FUNCTION: Catalyzes the opening of the heme ring to form the open-chain tetrapyrrole biliverdin IX with the release of iron and carbon monoxide (CO). Produces specifically the biliverdin IX-alpha isomer. Plays a minor role in phytochrome assembly and photomorphogenesis. {ECO:0000269|PubMed:16428602, ECO:0000269|PubMed:19860740}. ARA:AT1G58300-MONOMER;MetaCyc:AT1G58300-MONOMER;,ARA:AT1G69720-MONOMER;MetaCyc:AT1G69720-MONOMER; 1.14.14.18 32953,32434 Heme oxygenase 4, chloroplastic (EC 1.14.14.18),Heme oxygenase 3, chloroplastic (EC 1.14.14.18) chloroplast [GO:0009507]; heme binding [GO:0020037]; heme oxygenase (decyclizing) activity [GO:0004392]; metal ion binding [GO:0046872]; heme oxidation [GO:0006788]; photosynthesis [GO:0015979] TISSUE SPECIFICITY: Widely expressed at low levels. {ECO:0000269|PubMed:16428602}. locus:2016635;,locus:2205045; AT1G58300,AT1G69720 Heme oxygenase NA NA NA NA NA NA NA ENOG411EAJE Q6DBP6,Q9C6Z7 Q6DBP6_ARATH,Q9C6Z7_ARATH At1g30160,Uncharacterized protein T2H7.4 41960,36077 At1g30160,Uncharacterized protein T2H7.4 locus:2202502; AT1G30160 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EAJF MES1,MES2,MES8,ACL Q8S8S9,O80476,O80475,A0A1P8AXQ5,A0A1P8AXW0 MES1_ARATH,MES2_ARATH,MES8_ARATH,A0A1P8AXQ5_ARATH,A0A1P8AXW0_ARATH Methylesterase 1 (AtMES1) (EC 3.1.1.-),Methylesterase 2 (AtMES2) (EC 3.1.1.-) (Protein METHYLESTERASE 8) (AtME8),Methylesterase 8 (AtMES8) (EC 3.1.1.-),Acetone-cyanohydrin lyase FUNCTION: Methylesterase shown to have carboxylesterase activity, methyl indole-3-acetic acid (MeIAA) esterase activity, methyl salicylate (MeSA) esterase activity and methyl jasmonate (MeJA) esterase activity in vitro. Required to convert methyl salicylate (MeSA) to salicylic acid (SA) as part of the signal transduction pathways that activate systemic acquired resistance in systemic tissue. MeSA is believed to be an inactive form that needs to be demethylated to exert a biological effect. {ECO:0000269|PubMed:18467465, ECO:0000269|PubMed:18643994}.,FUNCTION: Methylesterase shown to have carboxylesterase activity, methyl indole-3-acetic acid (MeIAA) esterase activity, methyl salicylate (MeSA) esterase activity and methyl jasmonate (MeJA) esterase activity in vitro. {ECO:0000269|PubMed:18467465, ECO:0000269|PubMed:18643994}.,FUNCTION: Methylesterase shown to have carboxylesterase activity in vitro. {ECO:0000269|PubMed:18467465}. MISCELLANEOUS: Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. ARA:AT2G23620-MONOMER;,ARA:AT2G23600-MONOMER;,ARA:AT2G23590-MONOMER; 3.1.1.- 29766,29667,30687,31400,20832 Methylesterase 1 (AtMES1) (EC 3.1.1.-),Methylesterase 2 (AtMES2) (EC 3.1.1.-) (Protein METHYLESTERASE 8) (AtME8),Methylesterase 8 (AtMES8) (EC 3.1.1.-),Acetone-cyanohydrin lyase hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl jasmonate esterase activity [GO:0080032]; methyl salicylate esterase activity [GO:0080031]; defense response to fungus, incompatible interaction [GO:0009817]; salicylic acid metabolic process [GO:0009696]; systemic acquired resistance [GO:0009627],hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl jasmonate esterase activity [GO:0080032]; methyl salicylate esterase activity [GO:0080031]; salicylic acid metabolic process [GO:0009696],hydrolase activity, acting on ester bonds [GO:0016788],lyase activity [GO:0016829] locus:2046748;,locus:2046852;,locus:2046842; AT2G23620,AT2G23600,AT2G23590 Inherit from euNOG: esterase NA NA NA NA NA NA NA ENOG411EAJG WEL2 Q9C638,A0A1P8AUD2 WEL2_ARATH,A0A1P8AUD2_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 2 (Protein WEL2),WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) 84454,84585 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 2 (Protein WEL2),WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2825751; AT1G45545 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411EAJA Q4PSS8 Q4PSS8_ARATH Uncharacterized protein 52306 Uncharacterized protein locus:2061315; AT2G31480 NA NA NA NA NA NA NA NA ENOG411EAJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EAJC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-activating enzyme e1 C-terminal domain NA NA NA NA NA NA NA ENOG411EAJT HSFA6A Q1PDN3 HFA6A_ARATH Heat stress transcription factor A-6a (AtHsfA6a) (AtHsf-19) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 33156 Heat stress transcription factor A-6a (AtHsfA6a) (AtHsf-19) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2170832; AT5G43840 transcription factor NA NA NA NA NA NA NA ENOG411EAJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAJP F1P2.90 O24658,O24598,Q9SN84,F4JBK4 CHI59_ARATH,CHI58_ARATH,Q9SN84_ARATH,F4JBK4_ARATH Endochitinase At2g43590 (EC 3.2.1.14),Endochitinase At2g43580 (EC 3.2.1.14),At3g47540 (Chitinase family protein) (Endochitinase-like protein),Chitinase family protein ARA:AT2G43590-MONOMER;,ARA:AT2G43580-MONOMER;,ARA:AT3G47540-MONOMER; 3.2.1.14 28353,28781,23297,31214 Endochitinase At2g43590 (EC 3.2.1.14),Endochitinase At2g43580 (EC 3.2.1.14),At3g47540 (Chitinase family protein) (Endochitinase-like protein),Chitinase family protein chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response [GO:0006952]; polysaccharide catabolic process [GO:0000272],chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response [GO:0006952]; polysaccharide catabolic process [GO:0000272]; response to fungus [GO:0009620],chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032] locus:2043994;,locus:2044009;,locus:2079197; AT2G43590,AT2G43580,AT3G47540 Chitin recognition protein NA NA NA NA NA NA NA ENOG411EAJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding protein NA NA NA NA NA NA NA ENOG411EAJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-locus glycoprotein family Os05g0163500 protein A0A0P0WIA4 A0A0P0WIA4_ORYSJ Os05g0163500 OSNPB_050163500 ENOG411EAJS Q9LIR0,Q9LIR3,Q9LMR4 FB183_ARATH,FB181_ARATH,FBK4_ARATH Putative F-box protein At3g23970,Putative F-box protein At3g23950,Putative F-box/kelch-repeat protein At1g15680 48028,48440,47355 Putative F-box protein At3g23970,Putative F-box protein At3g23950,Putative F-box/kelch-repeat protein At1g15680 locus:2076166;,locus:2076131;,locus:2036124; AT3G23970,AT3G23950,AT1G15680 Inherit from euNOG: F-box domain NA NA NA NA NA NA NA ENOG411EAJ4 T2O9.70 Q9M1D4 Q9M1D4_ARATH Uncharacterized protein T2O9.70 (VQ motif-containing protein) 17954 Uncharacterized protein T2O9.70 (VQ motif-containing protein) locus:2101457; AT3G60090 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411EAJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EAJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: histidine protein methyltransferase 1 homolog Os09g0514300 protein A0A0P0XQ90 A0A0P0XQ90_ORYSJ Os09g0514300 OSNPB_090514300 ENOG411EAJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GH3 auxin-responsive promoter Jasmonic acid-amido synthetase JAR2 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 3) (OsGH3-3) (Indole-3-acetic acid-amido synthetase GH3.3) (Jasmonate-amino acid synthetase JAR1) (Protein JASMONATE RESISTANT 2) (OsJAR2),Probable indole-3-acetic acid-amido synthetase GH3.12 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 12) (OsGH3-12) (OsJAR3) Q5NAZ7,Q53P49 GH33_ORYSJ,GH312_ORYSJ GH3.3 JAR2 Os01g0221100 LOC_Os01g12160 P0483F08.33-1,GH3.12 Os11g0186500 LOC_Os11g08340 FUNCTION: Catalyzes the synthesis of jasmonate-amino acid conjugates by adenylation. Catalyzes the conjugation of jasmonate (JA) to Ile when expressed in a heterologous system (E.Coli) (PubMed:21619871). Catalyzes in vitro the conjugation of jasmonate (JA) to Ile, Phe, Leu, Met, Val and Trp (PubMed:24033451). May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin (By similarity). {ECO:0000250|UniProtKB:O82333, ECO:0000269|PubMed:21619871, ECO:0000269|PubMed:24033451}.,FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250|UniProtKB:O82333}. ENOG411EAJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411EAJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF946) NA NA NA NA NA NA NA ENOG411EAJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5HC GASA4 P46690,A8MQL8 GASA4_ARATH,A8MQL8_ARATH Gibberellin-regulated protein 4 (GAST1 protein homolog 4),GAST1 protein homolog 4 DISRUPTION PHENOTYPE: Increased number of axillary inflorescence shoots and decreased seed weight. {ECO:0000269|PubMed:17284469}. FUNCTION: Gibberellin-regulated protein involved in the regulation of floral meristem and floral organ identity, and promotion of seed size and weight. May play a role in the promotion of gibberellin responses such as regulation of flowering under short-day conditions, seed germination and inhibition of gibberellin oxidase. Possesses redox activity in E.coli and may function in redox regulation in planta. {ECO:0000269|PubMed:17284469, ECO:0000269|PubMed:21143681}. 11996,9410 Gibberellin-regulated protein 4 (GAST1 protein homolog 4),GAST1 protein homolog 4 cell [GO:0005623]; extracellular region [GO:0005576]; cell redox homeostasis [GO:0045454]; gibberellic acid mediated signaling pathway [GO:0009740]; response to gibberellin [GO:0009739] TISSUE SPECIFICITY: Expressed in flower buds, style, stamen filaments, vasculature of petals, root phloem, vasculature of cotyledons and rosette leaves and developing embryo. {ECO:0000269|PubMed:17284469, ECO:0000269|PubMed:9520278}. locus:2150896; AT5G15230 Gibberellin-regulated protein NA NA NA NA NA NA NA ENOG411E5HF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E5HG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5HD LNK4 Q9FL48 LNK4_ARATH Protein LNK4 (Night light-inducible and clock-regulated 4) DISRUPTION PHENOTYPE: No effect on circadian clock. {ECO:0000269|PubMed:25012192}. FUNCTION: Probable transcriptional coactivator. {ECO:0000250|UniProtKB:A8MQN2}. 32040 Protein LNK4 (Night light-inducible and clock-regulated 4) regulation of transcription, DNA-templated [GO:0006355]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351] locus:2169439; AT5G06980 NA NA NA NA NA NA NA NA ENOG411E5HK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWP-RK domain Os02g0744950 protein (RWP-RK domain-containing protein-like) Q6Z2T5 Q6Z2T5_ORYSJ Os02g0744950 OJ1118_G04.12 OJ1734_E02.39 OsJ_08362 OSNPB_020744950 ENOG411E5W0 Q8W465 Q8W465_ARATH Selenium binding protein (Uncharacterized protein At4g31360) (Uncharacterized protein At4g31360; F8F16.180) 20662 Selenium binding protein (Uncharacterized protein At4g31360) (Uncharacterized protein At4g31360; F8F16.180) locus:2128191; AT4G31360 NA Os11g0704000 protein (SelT/selW/selH selenoprotein domain containing protein, expressed) (SelT/selW/selH selenoprotein domain, putative),Os05g0250500 protein Q53NN8,A0A0P0WJS4 Q53NN8_ORYSJ,A0A0P0WJS4_ORYSJ Os11g0704000 LOC_Os11g47770 Os11g0704000 OsJ_34857 OSNPB_110704000,Os05g0250500 OSNPB_050250500 ENOG411E5W7 ENODL9 Q9LJU1 Q9LJU1_ARATH At3g20570 (Early nodulin-like protein 9) (Predicted GPI-anchored protein) 21510 At3g20570 (Early nodulin-like protein 9) (Predicted GPI-anchored protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2085775; AT3G20570 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EAYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated Os12g0239900 protein (Fragment) A0A0P0Y8I2 A0A0P0Y8I2_ORYSJ Os12g0239900 OSNPB_120239900 ENOG411DXH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteinyl-tRNA synthetase Os03g0143300 protein (Fragment),Os10g0463100 protein A0A0N7KGK1,A0A0N7KRW9 A0A0N7KGK1_ORYSJ,A0A0N7KRW9_ORYSJ Os03g0143300 OSNPB_030143300,Os10g0463100 OSNPB_100463100 ENOG411DXH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Probable potassium transporter 16 (OsHAK16) Q84MS3 HAK16_ORYSJ HAK16 Os03g0575200 LOC_Os03g37840 OsJ_11514 OSJNBa0008D12.19 OSJNBa0029P07.17 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DXH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Predicted ATPase of the ABC class Os05g0548300 protein (Fragment) Q0DG83 Q0DG83_ORYSJ Os05g0548300 Os05g0548300 OSNPB_050548300 ENOG411DXH1 VTE1 Q94FY7 TOCC_ARATH Tocopherol cyclase, chloroplastic (EC 5.5.1.24) (Sucrose export defective 1) (Vitamin E pathway gene 1 protein) Lacks both zeaxanthin and tocopherols.,Molecules produced during oxidative stress (MDA) accumulate in vte1 npq1 leaves after 7 d in high light confirming the occurrence of lipid peroxidation. Also fatty acids and chlorophylls levels decrease in npq1 vte1 leaves.,PSII is strongly photoinhibited and lipid peroxidation is enhanced in the double mutant.,Very sensitive to high light stress. When exposed to high light at low temperaturemost of the mature leaves of npq1 vte1 bleached in contrast with wild-type npq1 or vte1 leaves which did not exhibit visual symptoms of oxidative stress.,In mutant leaves PSII photoinhibition is more pronounced and PSII recovery proceeded at a slower rate relative to wild-type leaves. Lipid peroxidation is not detected by TL measurements either in wild-type leaves or mutant leaves. Determination of chlorophyll fatty acid and MDA confirmed that tocopherol deficiency in mutant leaves does not increase oxidative stress during long-term exposure of plants to high light stress at low temperature.,Mutant is completely devoid of all four forms of tocopherol.,Whole plants were exposed to continuous light of high PFD (1100 mmol.m-2.s-1) at low temperature (6°C) and no lipid peroxidation could be detected even after 48 h. Complete loss of tocopherol production; Low anthocyanin levels under high light; No other phenotypes detected-P. Dormann-2002 FUNCTION: Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol. {ECO:0000269|PubMed:12213958}. PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis. 5.5.1.24; 5.5.1.24 54721 Tocopherol cyclase, chloroplastic (EC 5.5.1.24) (Sucrose export defective 1) (Vitamin E pathway gene 1 protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid [GO:0009534]; plastoglobule [GO:0010287]; isomerase activity [GO:0016853]; tocopherol cyclase activity [GO:0009976]; chlorophyll metabolic process [GO:0015994]; fatty acid metabolic process [GO:0006631]; phloem sucrose loading [GO:0009915]; regulation of defense response [GO:0031347]; response to high light intensity [GO:0009644]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to temperature stimulus [GO:0009266]; vitamin E biosynthetic process [GO:0010189]; xanthophyll metabolic process [GO:0016122] locus:2125657; AT4G32770 tocopherol cyclase Probable tocopherol cyclase, chloroplastic (Vitamin E pathway gene 1 protein) Q6K7V6 TOCC_ORYSJ VTE1 Os02g0276500 LOC_Os02g17650 OsJ_06237 OSJNBa0055M07.5 P0017G06.29 FUNCTION: Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol (By similarity). {ECO:0000250, ECO:0000269|PubMed:21318489}. MISCELLANEOUS: Plants overexpressing VTE1 show increased tolerance to salt stress with reduced H(2)O(2) levels. Plants silencing VTE1 show enhanced sensitivity to salt stress with increased H(2)O(2) levels. ENOG411DXH2 HOP3,HOP2,HOP1 Q9STH1,Q5XEP2,Q9LNB6 HSOP3_ARATH,HSOP2_ARATH,HSOP1_ARATH Hsp70-Hsp90 organizing protein 3 (AtHop3),Hsp70-Hsp90 organizing protein 2 (AtHop2),Hsp70-Hsp90 organizing protein 1 (AtHop1) (Stress-induced-phosphoprotein 1) (STI1) DISRUPTION PHENOTYPE: Decreased thermotolerance after a long recovery (2 days) under nonstress conditions following an acclimation heat treatment. {ECO:0000269|PubMed:17085506}. FUNCTION: Mediates the association of the molecular chaperones HSP70 and HSP90. Mediates nuclear encoded chloroplast preproteins binding to HSP90 prior to chloroplastic sorting (By similarity). Involved in acclimation to heat. {ECO:0000250, ECO:0000269|PubMed:17085506}.,FUNCTION: Mediates the association of the molecular chaperones HSP70 and HSP90. Mediates nuclear encoded chloroplast preproteins binding to HSP90 prior to chloroplastic sorting (By similarity). {ECO:0000250}. R-ATH-3371497; 63706,64520,64585 Hsp70-Hsp90 organizing protein 3 (AtHop3),Hsp70-Hsp90 organizing protein 2 (AtHop2),Hsp70-Hsp90 organizing protein 1 (AtHop1) (Stress-induced-phosphoprotein 1) (STI1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; Hsp90 protein binding [GO:0051879]; preprotein binding [GO:0070678]; chaperone-mediated protein complex assembly [GO:0051131]; heat acclimation [GO:0010286]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; Hsp90 protein binding [GO:0051879]; preprotein binding [GO:0070678]; chaperone-mediated protein complex assembly [GO:0051131]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; nucleus [GO:0005634]; Hsp90 protein binding [GO:0051879]; preprotein binding [GO:0070678]; chaperone-mediated protein complex assembly [GO:0051131] locus:2139109;,locus:2026197;,locus:2034620; AT4G12400,AT1G62740,AT1G12270 Heat Shock Protein Os02g0644100 protein (Putative stress-induced protein sti1),Os02g0644100 protein (Fragment),Os04g0538000 protein (Fragment) Q6H660,A0A0P0VM71,A0A0P0WD35 Q6H660_ORYSJ,A0A0P0VM71_ORYSJ,A0A0P0WD35_ORYSJ Os02g0644100 OJ1282_H11.17 OSNPB_020644100,Os02g0644100 OSNPB_020644100,Os04g0538000 OSNPB_040538000 ENOG411DXH3 TIC21 Q9SHU7 TIC21_ARATH Protein TIC 21, chloroplastic (Protein CHLOROPLAST IMPORT APPARATUS 5) (AtCIA5) (Protein PERMEASE IN CHLOROPLASTS 1) (AtPIC1) (Translocon at the inner envelope membrane of chloroplasts 21) (AtTIC21) DISRUPTION PHENOTYPE: Seedling lethal when grown on soil. Albino or chlorotic dwarfed plants that accumulate unprocessed precursor proteins and chloroplast ferritin clusters when grown in vitro. {ECO:0000269|PubMed:16891400, ECO:0000269|PubMed:17337631, ECO:0000269|PubMed:19460081, ECO:0000269|PubMed:19531596}. Seedling lethal when grown on soil but produced albino leaves or even inflorescent tissues on synthetic media supplemented with sucrose.,The youngest part of the homozygous progeny are slightly green at the center of the seedlings.,Null allele.,Albino phenotype even in the youngest part of the seedling which often accumulates anthocyanins.,Seedlings grown in artificial media supplemented with sucrose are able to produce a few irregularly shaped leaves followed by an arrest in growth. The timing of growth arrest varies from one seedling to the next leading to a variety of sizes and morphologies.,Cotyledons in young homozygous progeny were red most likely because chlorophyll was low or absent and anthocyanin pigments accumulated.,Dwarfed and chlorotic mutant plants.,In the mutants homozygous progeny mature rosette leaves were retarded in growth. Secondary and tertiary veins in mutant leaves were thicker than in the wild type and their diameter was commensurate with that of the primary vein. The organization of leaf mesophyll into palisade and spongy parenchyma cells was lost and the leaf surface was extremely curled. This deformation in the mutant leaf was already visible in cotyledons. In addition leaf cross sections revealed that mesophyll cells in contrast with wild-type plants do not contain fully differentiated chloroplasts.,Plastids of cotyledons leaves and shoot apices in the mutant plants were characterized by the presence of electron-dense phytoferritin aggregates. Those clusters were not found in any chloroplasts of wild-type plants.,Roots were smaller than in wild-type plants. However no significant phenotype in roots of mutants maintained on sucrose-supplemented medium was observed.,The majority of the slowly growing homozygous mutant progeny produced almost transparent rosette leaves; however in approximately one-third of the plants the leaves appeared white. This subpopulation of mutants was even smaller and did not produce inflorescences.,The shoot apex and the very young emerging leaves of homozygous progeny were pale green and their leaves turned chlorotic while growing. After 6 weeks on sucrose-containing agar surviving mutant plants were able to produce an inflorescence; again the young sepals of the flower were pale green and became white subsequently.,The style and developing silique of the flower of the homozygous progeny were pale green whereas leaves and stem accumulated anthocyanin pigments.,No visible phenotype. Seedling lethal without exogenous sucrose; Red cotyledons; White or transparent rosette leaves -K. Philippar-2007 FUNCTION: Involved in chloroplast protein import across the inner envelope membrane. Acts also as a chloroplast permease regulating the iron transport and homeostasis. Involved in the uptake and sequestration of iron in plastids. {ECO:0000269|PubMed:17337631, ECO:0000269|PubMed:19460081, ECO:0000269|PubMed:19531596, ECO:0000269|PubMed:21343424}. 31276 Protein TIC 21, chloroplastic (Protein CHLOROPLAST IMPORT APPARATUS 5) (AtCIA5) (Protein PERMEASE IN CHLOROPLASTS 1) (AtPIC1) (Translocon at the inner envelope membrane of chloroplasts 21) (AtTIC21) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; copper uptake transmembrane transporter activity [GO:0015088]; protein homodimerization activity [GO:0042803]; cellular metal ion homeostasis [GO:0006875]; protein import into chloroplast stroma [GO:0045037] TISSUE SPECIFICITY: Ubiquitous. Highest expression in green tissues and very low levels in mature pollen. {ECO:0000269|PubMed:17337631}. locus:2049113; AT2G15290 Protein of unknown function (DUF3611) Os06g0638100 protein (cDNA clone:J033027A18, full insert sequence),Os02g0187600 protein (cDNA clone:J023030E23, full insert sequence),Os06g0638100 protein (Fragment) Q67WE9,Q6ZHS6,A0A0P0WZ28 Q67WE9_ORYSJ,Q6ZHS6_ORYSJ,A0A0P0WZ28_ORYSJ Os06g0638100 Os06g0638100 OsJ_22092 OSNPB_060638100 P0523F01.19,Os02g0187600 Os02g0187600 OJ1073_F05.27 OJ1145_F01.2 OSNPB_020187600,Os06g0638100 OSNPB_060638100 ENOG411DXH4 MRH10.11 Q1H5B1 Q1H5B1_ARATH At5g44000 (Glutathione S-transferase family protein) ARA:AT5G44000-MONOMER; 44611 At5g44000 (Glutathione S-transferase family protein) cytoplasm [GO:0005737]; glutathione transferase activity [GO:0004364] locus:2172512; AT5G44000 Glutathione S-transferase C-terminal domain Glutathione S-transferase C-terminal domain-containing protein-like (Os02g0814800 protein) (cDNA clone:002-148-F07, full insert sequence) Q6K8N9 Q6K8N9_ORYSJ Os02g0814800 Os02g0814800 OJ1293_E04.24 OsJ_08853 OSNPB_020814800 ENOG411DXH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region OSJNBb0022P19.1 protein (Os04g0209300 protein) (cDNA clone:J013026A05, full insert sequence),Os04g0209200 protein (Fragment),Os07g0408900 protein Q7XM41,Q0JES2,A0A0P0X4P5 Q7XM41_ORYSJ,Q0JES2_ORYSJ,A0A0P0X4P5_ORYSJ Os04g0209300 Os04g0209300 OSJNBb0022P19.1 OSNPB_040209300,Os04g0209200 Os04g0209200 OSNPB_040209200,Os07g0408900 OSNPB_070408900 ENOG411DXH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACT domain Os07g0475900 protein (Fragment) A0A0P0X6M1 A0A0P0X6M1_ORYSJ Os07g0475900 OSNPB_070475900 ENOG411DXH7 Q8GUN8,F4K7Z6 Q8GUN8_ARATH,F4K7Z6_ARATH Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase (EC 2.1.1.205) (2'-O-ribose RNA methyltransferase TRM7 homolog),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein FUNCTION: Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs. {ECO:0000256|HAMAP-Rule:MF_03162}. ARA:GQT-652-MONOMER; 2.1.1.205 33995,7039 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase (EC 2.1.1.205) (2'-O-ribose RNA methyltransferase TRM7 homolog),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; tRNA methyltransferase activity [GO:0008175]; cell division [GO:0051301]; cytoplasmic translation [GO:0002181]; defense response to bacterium [GO:0042742]; tRNA methylation [GO:0030488]; tRNA nucleoside ribose methylation [GO:0002128],methyltransferase activity [GO:0008168]; RNA methylation [GO:0001510] locus:2150069; AT5G01230 Ribosomal RNA methyltransferase Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase (EC 2.1.1.205) (2'-O-ribose RNA methyltransferase TRM7 homolog) Q5Z8V5 Q5Z8V5_ORYSJ Os06g0704900 OsJ_22564 OSNPB_060704900 P0018H04.6 FUNCTION: Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs. {ECO:0000256|HAMAP-Rule:MF_03162}. ENOG411DXHX MCM3 Q9FL33,A0A1P8BGV8,A0A1P8BGQ2,A0A1P8BGQ6 MCM3_ARATH,A0A1P8BGV8_ARATH,A0A1P8BGQ2_ARATH,A0A1P8BGQ6_ARATH DNA replication licensing factor MCM3 (EC 3.6.4.12) (Minichromosome maintenance protein 3) (AtMCM3),DNA helicase (EC 3.6.4.12) FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000269|PubMed:12089153}. R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69052;R-ATH-69300; Meiosis - yeast (04113),DNA replication (03030),Cell cycle - yeast (04111),Cell cycle (04110) 3.6.4.12 86357,68737,76339,63523 DNA replication licensing factor MCM3 (EC 3.6.4.12) (Minichromosome maintenance protein 3) (AtMCM3),DNA helicase (EC 3.6.4.12) MCM complex [GO:0042555]; THO complex [GO:0000347]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; cell cycle [GO:0007049]; DNA replication initiation [GO:0006270]; DNA unwinding involved in DNA replication [GO:0006268],MCM complex [GO:0042555]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; DNA replication initiation [GO:0006270] TISSUE SPECIFICITY: Expressed in root meristem, shoot apex and flower buds. {ECO:0000269|PubMed:12089153, ECO:0000269|PubMed:19357199}. locus:2170418; AT5G46280 DNA replication licensing factor DNA replication licensing factor MCM3 (EC 3.6.4.12) (Minichromosome maintenance protein 3) (OsMCM3),Os05g0173700 protein (Fragment) Q0DHC4,Q0DKC6 MCM3_ORYSJ,Q0DKC6_ORYSJ MCM3 Os05g0476200 LOC_Os05g39850 P0009H09,Os05g0173700 Os05g0173700 OSNPB_050173700 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. ENOG411DXHY F4JKZ9 F4JKZ9_ARATH Uncharacterized protein 32725 Uncharacterized protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829] locus:2129985; AT4G16060 NA Os05g0358400 protein (cDNA clone:006-202-A08, full insert sequence) (cDNA clone:J023108P17, full insert sequence),Os05g0358400 protein Q6L483,A0A0P0WL83 Q6L483_ORYSJ,A0A0P0WL83_ORYSJ Os05g0358400 OJ1045_C06.12 OSJNBa0009L15.2 OSNPB_050358400,Os05g0358400 OSNPB_050358400 ENOG411DXHZ BSH P93045,A0A1I9LPZ2,F4J581 BSH_ARATH,A0A1I9LPZ2_ARATH,F4J581_ARATH Chromatin structure-remodeling complex protein BSH (AtBSH) (Protein BUSHY) (SNF5 homolog),Transcription regulatory protein SNF5, putative (BSH) FUNCTION: Component of a multiprotein complex equivalent of the yeast SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:10325430}. MISCELLANEOUS: Was named BUSHY by PubMed:10325430 because antisense transgenic plants have a 'bushy' phenotype. 27289,25800,27590 Chromatin structure-remodeling complex protein BSH (AtBSH) (Protein BUSHY) (SNF5 homolog),Transcription regulatory protein SNF5, putative (BSH) nuclear chromosome [GO:0000228]; ATP-dependent chromatin remodeling [GO:0043044]; cell cycle [GO:0007049]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; nucleosome disassembly [GO:0006337]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],nuclear chromosome [GO:0000228]; chromatin remodeling [GO:0006338],nuclear chromosome [GO:0000228]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; chromatin remodeling [GO:0006338] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:10325430}. locus:2090512; AT3G17590 chromatin structure-remodeling complex protein Os02g0723700 protein (Fragment) Q0DY00 Q0DY00_ORYSJ Os02g0723700 Os02g0723700 OSNPB_020723700 ENOG411DXHP FKBP17-1 O81864 FK171_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic (PPIase FKBP17-1) (EC 5.2.1.8) (FK506-binding protein 17-1) (AtFKBP17-1) (Immunophilin FKBP17-1) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 24713 Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic (PPIase FKBP17-1) (EC 5.2.1.8) (FK506-binding protein 17-1) (AtFKBP17-1) (Immunophilin FKBP17-1) (Rotamase) chloroplast thylakoid lumen [GO:0009543]; cytoplasm [GO:0005737]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077] locus:2134035; AT4G19830 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q6H6D3 Q6H6D3_ORYSJ Os02g0168700 OsJ_05539 OSNPB_020168700 P0669G09.14 ENOG411DXHQ CLPP6 Q9SAA2,F4IAG5 CLPP6_ARATH,F4IAG5_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP6) (nClpP6) (nClpP1),ATP-dependent Clp protease proteolytic subunit FUNCTION: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). Essential protein required for chloroplast development and integrity. {ECO:0000250, ECO:0000269|PubMed:16980539}. 3.4.21.92 29382,31313 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP6) (nClpP6) (nClpP1),ATP-dependent Clp protease proteolytic subunit chloroplast stroma [GO:0009570]; serine-type endopeptidase activity [GO:0004252],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplastic endopeptidase Clp complex [GO:0009840]; plastid stroma [GO:0009532]; serine-type endopeptidase activity [GO:0004252]; chloroplast organization [GO:0009658]; photosynthesis [GO:0015979] TISSUE SPECIFICITY: Mostly expressed in leaves. Also detected in stems, and to a lower extent, in roots (at protein level). {ECO:0000269|PubMed:11982939}. locus:2027327; AT1G11750 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit Q852G0 Q852G0_ORYSJ LOC_Os03g29810 Os03g0411500 Os03g29810 OSNPB_030411500 ENOG411DXHR DTX31,DTX33,DTX29,DTX30,DTX32 Q9LPV4,Q9SX83,Q38956,Q9LS19,F4I4Q3,A0A1P8AUJ9,A0A1I9LQL4 DTX31_ARATH,DTX33_ARATH,DTX29_ARATH,DTX30_ARATH,DTX32_ARATH,A0A1P8AUJ9_ARATH,A0A1I9LQL4_ARATH Protein DETOXIFICATION 31 (AtDTX31) (Multidrug and toxic compound extrusion protein 31) (MATE protein 31) (Protein ROOT HAIR SPECIFIC 2),Protein DETOXIFICATION 33 (AtDTX33) (Multidrug and toxic compound extrusion protein 33) (MATE protein 33),Protein DETOXIFICATION 29 (AtDTX29) (Multidrug and toxic compound extrusion protein 29) (MATE protein 29),Protein DETOXIFICATION 30 (AtDTX30) (Multidrug and toxic compound extrusion protein 30) (MATE protein 30),Protein DETOXIFICATION 32 (AtDTX32) (Multidrug and toxic compound extrusion protein 32) (MATE protein 32),MATE efflux family protein DISRUPTION PHENOTYPE: Short root hairs. {ECO:0000269|PubMed:19448035}. Short root hairs-H. Cho-2009 FUNCTION: Positively mediates root hair elongation. {ECO:0000269|PubMed:19448035}. R-ATH-425366; 56906,52423,54321,53646,56362,42644,43457 Protein DETOXIFICATION 31 (AtDTX31) (Multidrug and toxic compound extrusion protein 31) (MATE protein 31) (Protein ROOT HAIR SPECIFIC 2),Protein DETOXIFICATION 33 (AtDTX33) (Multidrug and toxic compound extrusion protein 33) (MATE protein 33),Protein DETOXIFICATION 29 (AtDTX29) (Multidrug and toxic compound extrusion protein 29) (MATE protein 29),Protein DETOXIFICATION 30 (AtDTX30) (Multidrug and toxic compound extrusion protein 30) (MATE protein 30),Protein DETOXIFICATION 32 (AtDTX32) (Multidrug and toxic compound extrusion protein 32) (MATE protein 32),MATE efflux family protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855]; root hair elongation [GO:0048767],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2010401;,locus:2015368;,locus:2088822;,locus:2144421;,locus:2028115; AT1G12950,AT1G47530,AT3G26590,AT5G38030,AT1G23300 protein TRANSPARENT TESTA 12-like Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q6ZJI2 Q6ZJI2_ORYSJ Os08g0550200 OJ1479_B11.21 OsJ_28198 OSNPB_080550200 ENOG411DXHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb transcription factor (Os08g0144000 protein) (Putative D13F protein, MybSt1) (cDNA clone:J033054K18, full insert sequence) Q6ZDM0 Q6ZDM0_ORYSJ Os08g0144000 Os08g0144000 OsJ_26018 OSNPB_080144000 P0025F03.25 ENOG411DXHT CPSF73-II Q8GUU3,A0A1P8B2N2 CPS3B_ARATH,A0A1P8B2N2_ARATH Cleavage and polyadenylation specificity factor subunit 3-II (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit II) (AtCPSF73-II) (CPSF 73 kDa subunit II) (Protein EMBRYO SAC DEVELOPMENT ARREST 26),Cleavage and polyadenylation specificity factor 73 kDa subunit-II DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:14693369}. FUNCTION: Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. May function as mRNA 3'-end-processing endonuclease and also be involved in the histone 3'-end pre-mRNA processing. {ECO:0000305|PubMed:19748916}. MISCELLANEOUS: CPSF73-I and CPSF73-II are not functionally redundant, but both are essential in plant development. 3.1.27.- 68037,60521 Cleavage and polyadenylation specificity factor subunit 3-II (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit II) (AtCPSF73-II) (CPSF 73 kDa subunit II) (Protein EMBRYO SAC DEVELOPMENT ARREST 26),Cleavage and polyadenylation specificity factor 73 kDa subunit-II nucleus [GO:0005634]; nuclease activity [GO:0004518]; mRNA processing [GO:0006397]; polar nucleus fusion [GO:0010197] TISSUE SPECIFICITY: Highly expressed in senescence leaves, petals, stamens, pollen and late stages of siliques with seeds. Also detected in roots, stems, leaves and seedlings. {ECO:0000269|PubMed:14693369, ECO:0000269|PubMed:16897494}. locus:2065368; AT2G01730 cleavage and polyadenylation specificity factor Os09g0397900 protein (Putative FEG protein) Q6ERD4 Q6ERD4_ORYSJ Os09g0397900 Os09g0397900 OJ1655_B12.22 OsJ_29268 OSNPB_090397900 ENOG411DXHU TMN12,TMN11 F4JRE0,Q9FYQ8,F4JYB8 TMN12_ARATH,TMN11_ARATH,F4JYB8_ARATH Transmembrane 9 superfamily member 12 (Endomembrane protein 7) (Transmembrane nine protein 12) (AtTMN12),Transmembrane 9 superfamily member 11 (Endomembrane protein 6) (Transmembrane nine protein 11) (AtTMN11),Transmembrane 9 superfamily member 74140,74579,71428 Transmembrane 9 superfamily member 12 (Endomembrane protein 7) (Transmembrane nine protein 12) (AtTMN12),Transmembrane 9 superfamily member 11 (Endomembrane protein 6) (Transmembrane nine protein 11) (AtTMN11),Transmembrane 9 superfamily member endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773],endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802],endosome membrane [GO:0010008]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021] locus:2135620;,locus:2182397; AT4G12650,AT5G35160 transmembrane 9 superfamily member Transmembrane 9 superfamily member,Transmembrane 9 superfamily member (Fragment) Q9XGQ5,Q60DU0,Q69R01,Q6Z656,A0A0N7KK78 Q9XGQ5_ORYSJ,Q60DU0_ORYSJ,Q69R01_ORYSJ,Q6Z656_ORYSJ,A0A0N7KK78_ORYSJ Os08g0496900 B1142B04.38 OSNPB_080496900 P0026F07.9,Os05g0168500 OSJNBa0086E02.15 OSNPB_050168500,Os02g0797700 OJ1695_D07.1 OSNPB_020797700,Os02g0722300 Os02g0722300 OSNPB_020722300 P0654B04.28,Os05g0168500 OSNPB_050168500 ENOG411DXHV OST1 B3H6F9 B3H6F9_ARATH Protein kinase superfamily protein Impaired ability to close stomata in drought,Preopened stomata fail to close in response to ABA consistent with the inability to reduce water loss upon drought.,The mutation has no effect on the ability of preopened stomata to respond to light or CO2-free air but the mutant remain impared in the ABA-inhibition of light-induced stomatal opening.,In control experiments multiplication of the bacterial cor mutant (in Col and Ler) at the surface of leaves was greatly reduced compared whereas it multiplied efficiently when infiltrated directly into the apoplast (and caused typical disease symptoms incluring necrosis and chlorosis). In the surface-inoculated mutant the bacterial cor mutant multiplied efficiently.,Stomatal closure could not be induced by the bacterial PAMP (pathogen-associated molecular pattern) molecules flg2 (a biologically active peptide derived from flagellin) or LPS (lipopolysaccharide).,No change in effect of ABA inhibition of seed germination.,While ABA induces the closing of stomata in wildtype plants the stomata of the mutant remain open.,Wilty phenotype against rapid humudity decrease. Reduced stomatal closing under drought-J. Giraudat-2002 39186 Protein kinase superfamily protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] AT4G33950 serine threonine-protein kinase Serine/threonine-protein kinase SAPK8 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 8) (stress-activated protein kinase 8) (OsSAPK8),Serine/threonine-protein kinase SAPK9 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 9) (stress-activated protein kinase 9) (OsSAPK9),Serine/threonine-protein kinase SAPK3 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 3) (Protein kinase REK) (stress-activated protein kinase 3) (OsSAPK3),Os03g0764800 protein (Fragment),Os10g0564500 protein (Fragment) Q7Y0B9,Q75V57,P0C5D6,A0A0P0W3P0,A0A0P0XXV0 SAPK8_ORYSJ,SAPK9_ORYSJ,SAPK3_ORYSJ,A0A0P0W3P0_ORYSJ,A0A0P0XXV0_ORYSJ SAPK8 Os03g0764800 LOC_Os03g55600 OSJNBa0079B15.27,SAPK9 Os12g0586100 LOC_Os12g39630 OOSJNBa0017N12.8,SAPK3 REK Os10g0564500 LOC_Os10g41490 OsJ_32488 OSJNBa0027P10.6,Os03g0764800 OSNPB_030764800,Os10g0564500 OSNPB_100564500 FUNCTION: May play a role in signal transduction of hyperosmotic response (Probable). Together with PYL10, PP2C53 and SAPK10, may form an abscisic acid (ABA) signaling module involved in stress response (PubMed:26491145). {ECO:0000269|PubMed:26491145, ECO:0000305}.,FUNCTION: May play a role in signal transduction of hyperosmotic response (Probable). Can phosphorylate BZIP46 in vitro (PubMed:22301130). {ECO:0000269|PubMed:22301130, ECO:0000305}.,FUNCTION: May play a role in signal transduction of hyperosmotic response. ENOG411DXHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like NA NA NA NA NA NA NA ENOG411DXHH GC2 B0F9L7 GOGC2_ARATH Golgin candidate 2 (AtGC2) FUNCTION: Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. {ECO:0000250}. 74787 Golgin candidate 2 (AtGC2) Golgi apparatus [GO:0005794]; Golgi cisterna [GO:0031985]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; Golgi organization [GO:0007030]; retrograde transport, vesicle recycling within Golgi [GO:0000301] locus:2194075; AT1G18190 golgin candidate Os04g0652500 protein A0A0P0WFQ5 A0A0P0WFQ5_ORYSJ Os04g0652500 OSNPB_040652500 ENOG411DXHI MSL4,MSL7,MSL6,MSL8,MSL5 Q9LPG3,F4IME1,Q9SYM1,F4IME2,Q9LH74,A0A1P8AXM8,A0A1P8B261,F4IWA1 MSL4_ARATH,MSL7_ARATH,MSL6_ARATH,MSL8_ARATH,MSL5_ARATH,A0A1P8AXM8_ARATH,A0A1P8B261_ARATH,F4IWA1_ARATH Mechanosensitive ion channel protein 4 (Mechanosensitive channel of small conductance-like 4) (MscS-Like protein 4),Mechanosensitive ion channel protein 7 (Mechanosensitive channel of small conductance-like 7) (MscS-Like protein 7),Mechanosensitive ion channel protein 6 (Mechanosensitive channel of small conductance-like 6) (MscS-Like protein 6),Mechanosensitive ion channel protein 8 (Mechanosensitive channel of small conductance-like 8) (MscS-Like protein 8),Mechanosensitive ion channel protein 5 (Mechanosensitive channel of small conductance-like 5) (MscS-Like protein 5),Mechanosensitive ion channel family protein,Mechanosensitive channel of small conductance-like 5 DISRUPTION PHENOTYPE: No visible morphological defects in the coat or cell wall of dessicated pollen grains, but strongly decreased viability during rehydration. {ECO:0000269|PubMed:26494758}. Abolished stretch-activate mechanosensitive channel activity FUNCTION: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. {ECO:0000250}.,FUNCTION: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Exhibits a 6.3-fold preference for chloride over sodium. Regulates osmotic forces during pollen hydration and germination. {ECO:0000269|PubMed:26494758}. 100415,97372,96604,104309,100366,76369,96531,96427 Mechanosensitive ion channel protein 4 (Mechanosensitive channel of small conductance-like 4) (MscS-Like protein 4),Mechanosensitive ion channel protein 7 (Mechanosensitive channel of small conductance-like 7) (MscS-Like protein 7),Mechanosensitive ion channel protein 6 (Mechanosensitive channel of small conductance-like 6) (MscS-Like protein 6),Mechanosensitive ion channel protein 8 (Mechanosensitive channel of small conductance-like 8) (MscS-Like protein 8),Mechanosensitive ion channel protein 5 (Mechanosensitive channel of small conductance-like 5) (MscS-Like protein 5),Mechanosensitive ion channel family protein,Mechanosensitive channel of small conductance-like 5 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; mechanically-gated ion channel activity [GO:0008381]; anion transport [GO:0006820],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; mechanically-gated ion channel activity [GO:0008381]; anion transport [GO:0006820],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; anion transport [GO:0006820]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Expressed during somatic embryogenesis. {ECO:0000269|PubMed:26973252}. TISSUE SPECIFICITY: Expressed in tricellular and mature pollen, and in germinating tube. Not detected in leaves or roots. {ECO:0000269|PubMed:26494758}. locus:2024927;,locus:2827671;,locus:2202965;,locus:2099382; AT1G53470,AT2G17000,AT1G78610,AT2G17010,AT3G14810 Mechanosensitive ion channel Mechanosensitive ion channel protein,Os02g0668000 protein (Fragment) Q6ET90,A0A0P0VMZ1 Q6ET90_ORYSJ,A0A0P0VMZ1_ORYSJ OJ1725_H08.12-1 Os02g0668000 OsJ_07862 OSNPB_020668000,Os02g0668000 OSNPB_020668000 ENOG411DXHJ TMM Q9SSD1 TMM_ARATH Protein TOO MANY MOUTHS (Receptor-like protein 17) (AtRLP17) DISRUPTION PHENOTYPE: Lack of stomata in stems. By contrast, leaves have excess stomata, with many in direct contact and producing clusters. {ECO:0000269|PubMed:18979118}. Mutants produce stomata on the hypocotyl and also produce small groups of hypocotyl cells in an arrangement that resembles braided challah bread. Abnormal stomatal patterning-F. Sack-2002 FUNCTION: Promotes cell fate progression in stomatal development. In leaves, needed to correctly orient spacing divisions, to limit the number of asymmetric divisions in neighbor cells, and to promote the asymmetric (amplifying) divisions of meristemoids. In stems, promotes the conversion of meristemoids into guard mother cells (GMC) (PubMed:11090210, PubMed:12040198, PubMed:18979118). Positively regulates CAPRICE (CPC) expression in differentiating stomaless-forming cell files (PubMed:19513241). Forms constitutive complexes with ERECTA and ERL1 involved in the recognition of the stomatal regulatory peptides EPF1, EPF2 and EPFL9/STOMAGEN (PubMed:28536146). Modulates the activity of the ligand-receptor pairs EPF2-ERECTA and EPF1-ERL1 in stomatal development (PubMed:16002616, PubMed:22241782). Functions in a combinatorial specific manner with the ERECTA-family (ERf) receptor kinases in the regulation of the immune response (PubMed:27446127). {ECO:0000269|PubMed:11090210, ECO:0000269|PubMed:12040198, ECO:0000269|PubMed:16002616, ECO:0000269|PubMed:18979118, ECO:0000269|PubMed:19513241, ECO:0000269|PubMed:22241782, ECO:0000269|PubMed:27446127, ECO:0000269|PubMed:28536146}. MISCELLANEOUS: TMM lacks an intracellular kinase domain and may participate in active signal transduction only through physical interaction with other proteins (PubMed:12040198). Overexpression of TMM leads to altered formation of trichomes (PubMed:24553751). {ECO:0000269|PubMed:24553751, ECO:0000303|PubMed:12040198}. 54505 Protein TOO MANY MOUTHS (Receptor-like protein 17) (AtRLP17) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; peptide binding [GO:0042277]; receptor activity [GO:0004872]; asymmetric cell division [GO:0008356]; response to abscisic acid [GO:0009737] DEVELOPMENTAL STAGE: Decreases as leaves matured and no expression in fully expanded leaves. TISSUE SPECIFICITY: In epidermal cells of developing shoots and leaves, but not in roots. Expressed in the stomatal cell lineage in the developing epidermis. {ECO:0000269|PubMed:18979118}. locus:2016319; AT1G80080 Protein TOO MANY Os01g0623000 protein A0A0P0V5F4 A0A0P0V5F4_ORYSJ Os01g0623000 OSNPB_010623000 ENOG411DXHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q69TI8 Q69TI8_ORYSJ Os06g0192400 OSJNBa0090D06.51 OSNPB_060192400 P0698A06.11 ENOG411DXHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0259200 protein,Os01g0259200 protein (Fragment) Q5NAV8,A0A0P0V188 Q5NAV8_ORYSJ,A0A0P0V188_ORYSJ P0462H08.32-1 Os01g0259200 OsJ_01169 OSNPB_010259200,Os01g0259200 OSNPB_010259200 ENOG411DXHN FH3 O23373,A0A1P8B462,F4JJE8,A0A1P8B463 FH3_ARATH,A0A1P8B462_ARATH,F4JJE8_ARATH,A0A1P8B463_ARATH Formin-like protein 3 (AtFH3) (AtFORMIN-3),Formin 3 FUNCTION: Acts as actin nucleation factor that directs the formation of actin cables and polarized growth in pollen tubes. {ECO:0000269|PubMed:20023198}. 85894,50035,50134,46887 Formin-like protein 3 (AtFH3) (AtFORMIN-3),Formin 3 integral component of membrane [GO:0016021] AT4G15200 FH2 NA NA NA NA NA NA NA ENOG411DXHA B9DFB5,Q94K70,Q8VZB3,F4IDV8,F4I1Z0 B9DFB5_ARATH,Q94K70_ARATH,Q8VZB3_ARATH,F4IDV8_ARATH,F4I1Z0_ARATH AT1G63110 protein (GPI transamidase subunit PIG-U),GPI transamidase subunit PIG-U (Uncharacterized protein At1g12730),GPI transamidase subunit PIG-U (Uncharacterized protein At1g63110),GPI transamidase subunit PIG-U 45668,53699,44772,44129,52819 AT1G63110 protein (GPI transamidase subunit PIG-U),GPI transamidase subunit PIG-U (Uncharacterized protein At1g12730),GPI transamidase subunit PIG-U (Uncharacterized protein At1g63110),GPI transamidase subunit PIG-U GPI-anchor transamidase complex [GO:0042765]; attachment of GPI anchor to protein [GO:0016255],GPI-anchor transamidase complex [GO:0042765]; plasma membrane [GO:0005886]; attachment of GPI anchor to protein [GO:0016255] locus:2195093;,locus:2015183; AT1G63110,AT1G12730 phosphatidylinositol glycan anchor biosynthesis class U Os02g0688900 protein (Putative cell division control protein CDC91) (cDNA clone:J013059O06, full insert sequence) Q6ZGZ4 Q6ZGZ4_ORYSJ Os02g0688900 OJ1743_B12.18 OSNPB_020688900 ENOG411DXHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0640700 protein (Fragment),Os06g0206300 protein Q0ILK0,A0A0P0WTR9 Q0ILK0_ORYSJ,A0A0P0WTR9_ORYSJ Os12g0640700 Os12g0640700 OSNPB_120640700,Os06g0206300 OSNPB_060206300 ENOG411DXHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os06g0176300 protein (Os06g0177600 protein) A0A0N7KLM5 A0A0N7KLM5_ORYSJ Os06g0177600 Os06g0176300 OSNPB_060176300 OSNPB_060177600 ENOG411DXHD OTP51 Q9XIL5 PP154_ARATH Pentatricopeptide repeat-containing protein At2g15820, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 51) (AtOTP51) DISRUPTION PHENOTYPE: Can grow only in vitro on sucrose-containing medium under low light conditions. Mutant plants show a pale-green phenotype, very slow growth and delayed development. {ECO:0000269|PubMed:18557832}. Homozygous otp51-2 mutants can only survive in sucrose-supplemented in vitro cultures under low light conditions. The small developmentally delayed mutants are pale yellow under normal light conditions. otp51-2 mutants fail to splice intron 2 of the the ycf3 transcript encoded in the chloroplast genome. Because YCF3 is required for the proper assembly of photosystem I (PSI) These mutants have multiple defects related to photosynthesis. They have lower levels of total protein thylakoid membrane protein and chlorophyll than wild-type plants when both are grown hydroponically. Chlorophyll a/b ratios are elevated in otp51-2 mutants several PSI and PSII proteins cannot be detected chlorophyll fluorescence patterns are altered and the quantum efficiency of PSII is reduced. otp51-2 mutants also have elevated levels of unspliced products from the trnK trnL trnV trnG clpP trnI trnA and atpF genes. Lethal on soil or in normal light; Pale yellow; With exogenous sucrose under low light: Pale green; Dwarf; Slow growth-I. Small-2008 FUNCTION: Promotes the splicing of group II introns in chloroplasts. Required for the splicing of intron 2 of plastid ycf3 transcripts, a factor required for the assembly of photosystem I (PSI). Involved in the splicing of several other group-IIa introns. May be involved in the splicing of precursor forms of trnL, trnG, trnI, and trnA. Required for the assembly of PSI and PSII. {ECO:0000269|PubMed:18557832}. 97396 Pentatricopeptide repeat-containing protein At2g15820, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 51) (AtOTP51) chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; Group II intron splicing [GO:0000373]; mRNA cis splicing, via spliceosome [GO:0045292]; photosystem I assembly [GO:0048564]; RNA modification [GO:0009451] locus:2044541; AT2G15820 Pentatricopeptide repeat-containing protein Pentatricopeptide repeat-containing protein OTP51, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 51) (OsOTP51) Q6ZHJ5 OTP51_ORYSJ OTP51 Os02g0702000 LOC_Os02g47360 OJ1218_D07.6 OsJ_08060 DISRUPTION PHENOTYPE: Chlorophyll deficiency and seedling lethality when grown under normal light or low light. {ECO:0000269|PubMed:22353560}. FUNCTION: Promotes the splicing of group II introns in chloroplasts. Required for the splicing of intron 2 of plastid ycf3 transcripts, a factor required for the assembly of photosystem I (PSI). Involved in the splicing of atpF, ndhA, petB and rps16 chloroplastic transcripts. Required for the assembly of PSI. {ECO:0000269|PubMed:22353560}. ENOG411DXHE F4HS31 F4HS31_ARATH Pectin lyase-like superfamily protein 36045 Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2016239; AT1G80140 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411DXHF PCMP-H31 Q9FLX6 PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850, chloroplastic 98840 Pentatricopeptide repeat-containing protein At5g52850, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2176927; AT5G52850 Pentatricopeptide repeat-containing protein Os03g0861900 protein Q0DLJ0 Q0DLJ0_ORYSJ Os03g0861900 Os03g0861900 OSNPB_030861900 ENOG411DXHG Q9LMK4,A0A1P8AWM2 Q9LMK4_ARATH,A0A1P8AWM2_ARATH CHUP1-like protein (F10K1.18 protein),CHUP1-like protein 44930,37365 CHUP1-like protein (F10K1.18 protein),CHUP1-like protein chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; chloroplast organization [GO:0009658] locus:2007477; AT1G07120 protein CHUP1 chloroplastic-like Os03g0294100 protein (Fragment) A0A0N7KH33 A0A0N7KH33_ORYSJ Os03g0294100 OSNPB_030294100 ENOG411DQXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E9U9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis NA NA NA NA NA NA NA ENOG411E9U8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os01g0162300 protein (Fragment) Q0JQG8 Q0JQG8_ORYSJ Os01g0162300 Os01g0162300 OSNPB_010162300 ENOG411E9U1 Q8GWG7,A0A1P8AQZ3,A0A1P8AQZ0,A8MQJ6 Q8GWG7_ARATH,A0A1P8AQZ3_ARATH,A0A1P8AQZ0_ARATH,A8MQJ6_ARATH Phosphoglycerate mutase family protein (Uncharacterized protein At1g09932),Phosphoglycerate mutase family protein 29668,26726,26706,28927 Phosphoglycerate mutase family protein (Uncharacterized protein At1g09932),Phosphoglycerate mutase family protein locus:1005716755; AT1G09932 PGAM NA NA NA NA NA NA NA ENOG411E9U0 Q9LIM6,A0A1I9LS37 Y3649_ARATH,A0A1I9LS37_ARATH BTB/POZ domain-containing protein At3g26490,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 66348,56834 BTB/POZ domain-containing protein At3g26490,Phototropic-responsive NPH3 family protein plasma membrane [GO:0005886]; protein ubiquitination [GO:0016567] locus:2079296; AT3G26490 phototropic-responsive NPH3 family protein NA NA NA NA NA NA NA ENOG411E9U3 Q9M9D9,A0A1P8AVH5,A0A1P8AVH8 Q9M9D9_ARATH,A0A1P8AVH5_ARATH,A0A1P8AVH8_ARATH 2-oxoglutarate-dependent dioxygenase-like protein (T16N11.5 protein),2-oxoglutarate-dependent dioxygenase-like protein ARA:GQT-2637-MONOMER; 37334,37707,38207 2-oxoglutarate-dependent dioxygenase-like protein (T16N11.5 protein),2-oxoglutarate-dependent dioxygenase-like protein dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872] locus:2196618; AT1G15540 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E9U2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9U5 NPF7.2 Q8GXN2 PTR47_ARATH Protein NRT1/ PTR FAMILY 7.2 (AtNPF7.2) (Nitrate transporter 1.8) DISRUPTION PHENOTYPE: No visible phenotype. Higher nitrate concentration in xylem sap and increased cadmium sensitivity. A greater proportion of nitrate accumulates in shoots under cadmium stress. {ECO:0000269|PubMed:20501909}. Nitrate concentration in nrt1.8-1 xylem sap is significantly higher than in that from wild type Ws plants. Cadmium sensitive. Sensitive to a combination of nitrate and cadmium-J. Gong-2010 FUNCTION: Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport. {ECO:0000269|PubMed:20501909}. R-ATH-427975;R-ATH-6798695; 65507 Protein NRT1/ PTR FAMILY 7.2 (AtNPF7.2) (Nitrate transporter 1.8) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; symporter activity [GO:0015293]; nitrate assimilation [GO:0042128]; response to cadmium ion [GO:0046686]; response to nitrate [GO:0010167] TISSUE SPECIFICITY: Expressed in xylem parenchyma cells within the vasculature. Expressed in siliques and flowers. Higher expression in shoots than in roots. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:20501909}. locus:2119058; AT4G21680 proton-dependent oligopeptide transport NA NA NA NA NA NA NA ENOG411E9U7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E9U6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E9UI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9UH Q9S9K4 ASPL2_ARATH Aspartic proteinase-like protein 2 (EC 3.4.23.-) 3.4.23.- 51828 Aspartic proteinase-like protein 2 (EC 3.4.23.-) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2200365; AT1G65240 Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411E9UK NPF2.14 Q9CAR9 PTR20_ARATH Putative protein NRT1/ PTR FAMILY 2.14 (AtNPF2.14) R-ATH-427975;R-ATH-6798695; 62580 Putative protein NRT1/ PTR FAMILY 2.14 (AtNPF2.14) integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Not detected. {ECO:0000269|PubMed:17481610}. locus:2196734; AT1G69860 POT family NA NA NA NA NA NA NA ENOG411E9UJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411E9UM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9UA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9UB CRRSP27,CRRSP44,CRRSP48,CRRSP52,CRRSP26,CRRSP29,CRRSP41,CRRSP46,CRRSP51,CRRSP13,CRRSP43,CRRSP47,CRRSP42,CRRSP49,CRRSP53,CRRSP28,CRRSP45,CRRSP50,CRRSP54 Q9LRL0,P0CJ51,P0CJ55,P0CJ59,Q9LRL1,Q9LRK8,Q9SVI0,P0CJ53,P0CJ58,Q9LJW2,P0CJ50,P0CJ54,P0CJ49,P0CJ56,P0CJ60,Q9LRK9,P0CJ52,P0CJ57,P0CJ61,A0A1P8B658 CRR27_ARATH,CRR44_ARATH,CRR48_ARATH,CRR52_ARATH,CRR26_ARATH,CRR29_ARATH,CRR41_ARATH,CRR46_ARATH,CRR51_ARATH,CRR13_ARATH,CRR43_ARATH,CRR47_ARATH,CRR42_ARATH,CRR49_ARATH,CRR53_ARATH,CRR28_ARATH,CRR45_ARATH,CRR50_ARATH,CRR54_ARATH,A0A1P8B658_ARATH Putative cysteine-rich repeat secretory protein 27,Cysteine-rich repeat secretory protein 44,Cysteine-rich repeat secretory protein 48,Cysteine-rich repeat secretory protein 52,Cysteine-rich repeat secretory protein 26,Cysteine-rich repeat secretory protein 29,Cysteine-rich repeat secretory protein 41,Cysteine-rich repeat secretory protein 46,Cysteine-rich repeat secretory protein 51,Putative cysteine-rich repeat secretory protein 13,Cysteine-rich repeat secretory protein 43,Cysteine-rich repeat secretory protein 47,Cysteine-rich repeat secretory protein 42,Cysteine-rich repeat secretory protein 49,Cysteine-rich repeat secretory protein 53,Putative cysteine-rich repeat secretory protein 28,Cysteine-rich repeat secretory protein 45,Cysteine-rich repeat secretory protein 50,Cysteine-rich repeat secretory protein 54,Cysteine-rich receptor-like kinase 28776,29018,30332,28930,30190,29436,29313,30758 Putative cysteine-rich repeat secretory protein 27,Cysteine-rich repeat secretory protein 44,Cysteine-rich repeat secretory protein 48,Cysteine-rich repeat secretory protein 52,Cysteine-rich repeat secretory protein 26,Cysteine-rich repeat secretory protein 29,Cysteine-rich repeat secretory protein 41,Cysteine-rich repeat secretory protein 46,Cysteine-rich repeat secretory protein 51,Putative cysteine-rich repeat secretory protein 13,Cysteine-rich repeat secretory protein 43,Cysteine-rich repeat secretory protein 47,Cysteine-rich repeat secretory protein 42,Cysteine-rich repeat secretory protein 49,Cysteine-rich repeat secretory protein 53,Putative cysteine-rich repeat secretory protein 28,Cysteine-rich repeat secretory protein 45,Cysteine-rich repeat secretory protein 50,Cysteine-rich repeat secretory protein 54,Cysteine-rich receptor-like kinase extracellular region [GO:0005576],kinase activity [GO:0016301] locus:2095607;,locus:2095642;,locus:2092793; AT3G21980,AT4G20630,AT4G20590,AT4G20550,AT3G21970,AT3G21990,AT4G20670,AT4G20610,AT4G20560,AT3G29040,AT4G20640,AT4G20600,AT4G20645,AT4G20580,AT4G20540,AT3G21985,AT4G20620,AT4G20570,AT4G20530 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E9UE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411E9UG BGAL12 Q9SCV0,A0A1P8B827,A0A1P8B829,A0A1P8B849,A0A1P8B834,A0A1P8B828 BGA12_ARATH,A0A1P8B827_ARATH,A0A1P8B829_ARATH,A0A1P8B849_ARATH,A0A1P8B834_ARATH,A0A1P8B828_ARATH Beta-galactosidase 12 (Lactase 12) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23),Beta-galactosidase 12 ARA:AT4G26140-MONOMER; 3.2.1.23 81533,66231,80118,84203,71584,63561 Beta-galactosidase 12 (Lactase 12) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23),Beta-galactosidase 12 apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975],beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Ubiquitous, with higher expression levels in roots and siliques. {ECO:0000269|PubMed:16267099}. locus:2120830; AT4G26140 beta-galactosidase 12 NA NA NA NA NA NA NA ENOG411E9UF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prenyltransferase and squalene oxidase repeat Terpene cyclase/mutase family member (EC 5.4.99.-),Os11g0286800 protein,Os11g0286800 protein (Fragment) Q0IT98,A0A0P0Y1B3,A0A0P0Y1C0,A0A0P0Y167 Q0IT98_ORYSJ,A0A0P0Y1B3_ORYSJ,A0A0P0Y1C0_ORYSJ,A0A0P0Y167_ORYSJ Os11g0286800 OSNPB_110286800 ENOG411E9UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E9UX PP2B11,PP2B12 Q949S5,Q9FLU7 P2B11_ARATH,P2B12_ARATH F-box protein PP2-B11 (Protein PHLOEM PROTEIN 2-LIKE B11) (AtPP2-B11) (SKP1-interacting partner 12),Putative F-box protein PP2-B12 (Protein PHLOEM PROTEIN 2-LIKE B12) (AtPP2-B12) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 28984,29182 F-box protein PP2-B11 (Protein PHLOEM PROTEIN 2-LIKE B11) (AtPP2-B11) (SKP1-interacting partner 12),Putative F-box protein PP2-B12 (Protein PHLOEM PROTEIN 2-LIKE B12) (AtPP2-B12) nucleus [GO:0005634]; carbohydrate binding [GO:0030246]; protein ubiquitination [GO:0016567],carbohydrate binding [GO:0030246] locus:2016349;,locus:2153954; AT1G80110,AT5G24560 F-box protein Os02g0813166 protein,F-box family protein-like (Os02g0813300 protein) (Os02g0813350 protein) (cDNA clone:001-034-B03, full insert sequence) (cDNA clone:J013092F18, full insert sequence),Os02g0812600 protein,Os02g0813000 protein C7IZ90,Q6K3E9,B9F463,A0A0P0VR40 C7IZ90_ORYSJ,Q6K3E9_ORYSJ,B9F463_ORYSJ,A0A0P0VR40_ORYSJ Os02g0813166 Os02g0813166 OSNPB_020813166,Os02g0813350 Os02g0813300 OJ1293_E04.3 OsJ_08840 OSJNBa0053L11.25 OSNPB_020813350,Os02g0812600 OsJ_08834 OSNPB_020812600,Os02g0813000 OSNPB_020813000 ENOG411E9UZ OL2 Q42431 OLEO4_ARATH Oleosin 20.3 kDa (Oleosin type 4) Oil bodies of ole1 ole3 double mutant are much larger than ole1 and ole3 single mutants. ole1 ole3 seeds hardly germinate. None of them that are treated with freezing (at -30°C for 1 day) germinate.,Oil bodies of ole2 ole3 double mutant are much larger than ole2 and ole3 single mutants. Treating ole2 ole3 seeds with freezing (at -30°C for 1 day) inhibits and delays their germination although ole2 ole3 seeds without freezing germinate normally.,ole3 seeds have larger oil bodies than wild-type. OLE3 dificiency leads to loss of freezing tolerance of Arabidopsis seeds. Treating ole3 seeds with freezing (at -30°C for 1 day) slightly delay their germination although ole3 seeds without freezing treatment germinate normally. Oil bodies of ole1 ole3 double mutant are much larger than ole3. ole1 ole3 seeds hardly germinate. None of ole1 ole3 seeds treated with freezing (at -30°C for 1 day) germinate. Oil bodies of ole2 ole3 double mutant are much larger than ole3. Treating ole2 ole3 seeds with freezing (at -30°C for 1 day) inhibits and delays their germination although ole2 ole3 seeds without freezing germinate normally. Germination sensitive to freezing-I. Hara-Nishimura-2008 FUNCTION: May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth (By similarity). {ECO:0000250}. 20313 Oleosin 20.3 kDa (Oleosin type 4) integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915]; response to freezing [GO:0050826]; seed germination [GO:0009845]; seed oilbody biogenesis [GO:0010344] DEVELOPMENTAL STAGE: Expression increases continuously throughout embryonic development. {ECO:0000269|PubMed:8756606}. locus:2089189; AT3G27660 oleosin 4 NA NA NA NA NA NA NA ENOG411E9UQ ZAT11,F4P12_300 Q9SLD4,Q9LFG0 ZAT11_ARATH,Q9LFG0_ARATH Zinc finger protein ZAT11,At3g53600 (C2H2-type zinc finger family protein) (Uncharacterized protein At3g53600) (Zinc finger-like protein) FUNCTION: Probable transcription factor that may be involved in stress responses. {ECO:0000250}. 20230,20147 Zinc finger protein ZAT11,At3g53600 (C2H2-type zinc finger family protein) (Uncharacterized protein At3g53600) (Zinc finger-like protein) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to nickel ion [GO:0071289]; regulation of root development [GO:2000280]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. locus:2049811;,locus:2084046; AT2G37430,AT3G53600 zinc finger NA NA NA NA NA NA NA ENOG411E9UP Q8RWM4 Q8RWM4_ARATH Beta-glucosidase-like protein (Glycosyl hydrolase family protein) ARA:AT5G20940-MONOMER; 67650 Beta-glucosidase-like protein (Glycosyl hydrolase family protein) plasma membrane [GO:0005886]; beta-glucosidase activity [GO:0008422]; glucan catabolic process [GO:0009251] locus:2147102; AT5G20940 Glycosyl hydrolase family NA NA NA NA NA NA NA ENOG411E9US PERK14 O65530 PEK14_ARATH Proline-rich receptor-like protein kinase PERK14 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 14) (AtPERK14) 2.7.11.1 77397 Proline-rich receptor-like protein kinase PERK14 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 14) (AtPERK14) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Mostly expressed in flower buds, and, to a lower extent, in inflorescence bolts, roots, seedlings, leaves and siliques. {ECO:0000269|PubMed:15653807}. locus:2125692; AT4G32710 STYKc NA NA NA NA NA NA NA ENOG411E9UU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9UT EXPA2 Q38866 EXPA2_ARATH Expansin-A2 (AtEXPA2) (Alpha-expansin-2) (At-EXP2) (AtEx2) (Ath-ExpAlpha-1.12) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 27749 Expansin-A2 (AtEXPA2) (Alpha-expansin-2) (At-EXP2) (AtEx2) (Ath-ExpAlpha-1.12) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] locus:2153569; AT5G05290 atexpa2 exp2 atexp2 athexp alpha 1.12 atexpa2 (arabidopsis thaliana expansin a2) NA NA NA NA NA NA NA ENOG411E9UW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-cysteine ligase family 2(GCS2) NA NA NA NA NA NA NA ENOG411E9UV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411E0YI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein Os01g0909051 protein,Os03g0413850 protein A0A0P0VBW5,A0A0P0VZC8 A0A0P0VBW5_ORYSJ,A0A0P0VZC8_ORYSJ Os01g0909051 OSNPB_010909051,Os03g0413850 OSNPB_030413850 ENOG411E0YJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium:solute symporter family NA NA NA NA NA NA NA ENOG411E0YK RPL16 Q95747 RM16_ARATH 60S ribosomal protein L16, mitochondrial 20094 60S ribosomal protein L16, mitochondrial mitochondrion [GO:0005739]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543] ATMG00080 60S ribosomal protein L16 60S ribosomal protein L16, mitochondrial P46801 RM16_ORYSJ RPL16 ENOG411E0YM BBX21 Q9LQZ7 BBX21_ARATH B-box zinc finger protein 21 (AtBBX21) (Protein LONG HYPOCOTYL UNDER SHADE) (Protein SALT TOLERANCE HOMOLOG 2) DISRUPTION PHENOTYPE: Enhanced number of emerged lateral roots. {ECO:0000269|PubMed:17965270}. Long hypocotyl under shadelight-J. Botto-2010 FUNCTION: Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. 36634 B-box zinc finger protein 21 (AtBBX21) (Protein LONG HYPOCOTYL UNDER SHADE) (Protein SALT TOLERANCE HOMOLOG 2) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; zinc ion binding [GO:0008270]; photomorphogenesis [GO:0009640]; regulation of transcription, DNA-templated [GO:0006355]; shade avoidance [GO:0009641]; transcription, DNA-templated [GO:0006351] locus:2005624; AT1G75540 Salt tolerance-like protein ORPHANS transcription factor (Os02g0646200 protein) (Putative zinc finger protein) (cDNA clone:J023090D24, full insert sequence) Q6H630 Q6H630_ORYSJ Os02g0646200 OSNPB_020646200 P0030D07.27 P0519A12.12 ENOG411E0YN NAC047,ANAC047 Q84TD6,Q9SQQ5 NAC47_ARATH,Q9SQQ5_ARATH NAC transcription factor 47 (NAC domain-containing protein 47) (ANAC047) (Protein SPEEDY HYPONASTIC GROWTH),NAC domain containing protein 47 (NAM-like protein (No apical meristem)) FUNCTION: Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. MISCELLANEOUS: In rosette plants, root flooding (waterlogging) triggers rapid upward (hyponastic) leaf movement representing an important architectural stress response that critically determines plant performance in natural habitats (Probable). Plants silencing NAC047 produce abnormally shaped seeds (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:24363315}. 40850,38937 NAC transcription factor 47 (NAC domain-containing protein 47) (ANAC047) (Protein SPEEDY HYPONASTIC GROWTH),NAC domain containing protein 47 (NAM-like protein (No apical meristem)) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of ethylene biosynthetic process [GO:0010365]; response to flooding [GO:0009413]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2095908; AT3G04070 nac domain Os05g0415400 protein,Os01g0104200 protein,NAC domain transcription factor, putative, expressed (NAC transcription factor 58) (Os03g0327800 protein) (Putative NAM (No apical meristem) protein) (cDNA, clone: J100075D15, full insert sequence),NAC6 (Os02g0214500 protein) (Putative OsNAC6 protein) (cDNA clone:002-126-B03, full insert sequence) Q6AT85,A2ZNA6,Q8H7M1,Q6H8A9 Q6AT85_ORYSJ,A2ZNA6_ORYSJ,Q8H7M1_ORYSJ,Q6H8A9_ORYSJ Os05g0415400 OJ1123_C08.8 OsJ_18554 OSJNBa0084P24.1 OSNPB_050415400,Os01g0104200 OsJ_00034 OSNPB_010104200,OSJNBb0014I10.5 NAC58 Os03g0327800 LOC_Os03g21060 OSNPB_030327800,Os02g0214500 Os02g0214500 OJ1006_D05.18 OsJ_05880 OSNPB_020214500 ENOG411E0YA O04087 O04087_ARATH DNAJ chaperone C-terminal domain-containing protein (DnaJ isolog; 47062-48761) (HSP40/DnaJ peptide-binding protein) R-ATH-3371453;R-ATH-3371568;R-ATH-3371571; 48155 DNAJ chaperone C-terminal domain-containing protein (DnaJ isolog; 47062-48761) (HSP40/DnaJ peptide-binding protein) unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2197429; AT1G11040 dnaJ homolog subfamily B member 13-like NA NA NA NA NA NA NA ENOG411E0YC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os02g0107900 protein,Os02g0211000 protein (Fragment) A0A0N7KEJ4,A0A0P0VG85 A0A0N7KEJ4_ORYSJ,A0A0P0VG85_ORYSJ Os02g0107900 OSNPB_020107900,Os02g0211000 OSNPB_020211000 ENOG411E0YX PRP4,PRP2 Q9T0I5,Q9SKP9 PRP4_ARATH,PRP2_ARATH Proline-rich protein 4 (AtPRP4),Proline-rich protein 2 (AtPRP2) 49136,35508 Proline-rich protein 4 (AtPRP4),Proline-rich protein 2 (AtPRP2) cell wall [GO:0005618]; extracellular region [GO:0005576],cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type cell wall organization [GO:0009664] DEVELOPMENTAL STAGE: In young seedlings, detected in the hypocotyl, cotyledons and rosette leaves,mostly in expanding leaves. At flowering time, expressed in stems, cauline leaves, sepals, and, in open flowers only, in anthers and on stigma surface. Later present in pedicels of developing siliques, nectaries, and along the length of maturing siliques. Expressed in roots during the early stages of lateral root formation. {ECO:0000269|PubMed:10594096}.,DEVELOPMENTAL STAGE: In young seedlings, detected in the hypocotyl, cotyledons and rosette leaves,mostly in expanding leaves. At flowering time, expressed in stems, cauline leaves, sepals, and, in closed flowers only, in anthers. Later present in pedicels of developing siliques, nectaries, and along the length of maturing siliques. {ECO:0000269|PubMed:10594096}. TISSUE SPECIFICITY: Mostly expressed in aerial organs, particularly in expanding leaves, stems, flowers, and siliques. Also present in stipules. {ECO:0000269|PubMed:10594096}.,TISSUE SPECIFICITY: Mostly expressed in aerial organs, particularly in expanding leaves, stems, flowers, and siliques. {ECO:0000269|PubMed:10594096}. locus:2141777;,locus:2047087; AT4G38770,AT2G21140 Proline-rich protein Os10g0148100 protein (Proline-rich protein) (Proline-rich protein, putative, expressed) (Putative proline-rich protein) (cDNA clone:001-031-E08, full insert sequence) (cDNA clone:J013025G01, full insert sequence) Q7XGT9 Q7XGT9_ORYSJ LOC_Os10g05750 Os10g0148100 OSJNBb0016M10.7 OSNPB_100148100 ENOG411E0YP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os05g0382500 protein (Putative cytochrome P450) (cDNA clone:002-121-G02, full insert sequence) Q6L4C7 Q6L4C7_ORYSJ Os05g0382500 OSJNBa0088M05.14 OSNPB_050382500 ENOG411E0YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XS zinc finger domain Os05g0153200 protein (Fragment) A0A0P0WI30 A0A0P0WI30_ORYSJ Os05g0153200 OSNPB_050153200 ENOG411EDPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EDPD Q9SCQ5,Q1G371,B3H6N2 FBD10_ARATH,Q1G371_ARATH,B3H6N2_ARATH Putative FBD-associated F-box protein At3g50710,FBD-like domain family protein 49869,26215,26116 Putative FBD-associated F-box protein At3g50710,FBD-like domain family protein locus:2101674;,locus:4010714054; AT3G50710,AT5G56452 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EDPN RMV1 Q9FFL1 RMV1_ARATH Polyamine transporter RMV1 (Protein RESISTANT TO METHYL VIOLOGEN 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased tolerance to paraquat. {ECO:0000269|PubMed:22492932}. FUNCTION: Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Possesses high affinity for spermine and spermidine and lower affinity for putrescine. Transports paraquat, a polyamine analog, and thus confers sensitivity to this chemical which is used as a herbicide. {ECO:0000269|PubMed:22492932}. MISCELLANEOUS: Methyl viologen is the brand name of paraquat. Plants over-expressing RMV1 show hypersensitivity to paraquat (PubMed:22492932). {ECO:0000305|PubMed:22492932}. 53694 Polyamine transporter RMV1 (Protein RESISTANT TO METHYL VIOLOGEN 1) integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; antiporter activity [GO:0015297]; L-amino acid transmembrane transporter activity [GO:0015179]; polyamine transmembrane transporter activity [GO:0015203]; symporter activity [GO:0015293]; cadaverine transport [GO:0015839]; polyamine transport [GO:0015846]; response to heat [GO:0009408] DEVELOPMENTAL STAGE: Expressed in hypocotyls and petioles of cotyledons in 1- to 3-day-old seedlings. {ECO:0000269|PubMed:22492932}. locus:2166354; AT5G05630 amino acid permease family protein NA NA NA NA NA NA NA ENOG411EDPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl-CoA dehydrogenase C-terminal domain Os06g0347100 protein (Fragment),Os06g0346300 protein (Fragment) Q0DCC7,A0A0P0WW94 Q0DCC7_ORYSJ,A0A0P0WW94_ORYSJ Os06g0347100 Os06g0347100 OSNPB_060347100,Os06g0346300 OSNPB_060346300 ENOG411EDPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HAD superfamily subfamily IIIB (Acid phosphatase) NA NA NA NA NA NA NA ENOG411EDPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein Leucine Rich Repeat family protein (Os11g0655700 protein) Q2R078 Q2R078_ORYSJ Os11g0655700 LOC_Os11g43500 OsJ_34695 OSNPB_110655700 ENOG411EDPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9FU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein NA NA NA NA NA NA NA ENOG411EDP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EDP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pheophorbide a oxygenase NA NA NA NA NA NA NA ENOG411E7C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os10g0410800 protein,Os01g0204900 protein,Os10g0411900 protein,Os08g0496700 protein,Os09g0341901 protein (Fragment),Os05g0345900 protein Q7XER3,Q0JPS9,Q7XEQ2,A0A0P0XHM5,A0A0P0XKJ1,A0A0P0WL24 Q7XER3_ORYSJ,Q0JPS9_ORYSJ,Q7XEQ2_ORYSJ,A0A0P0XHM5_ORYSJ,A0A0P0XKJ1_ORYSJ,A0A0P0WL24_ORYSJ Os10g0410800 LOC_Os10g27080 OSNPB_100410800,Os01g0204900 Os01g0204900 OSNPB_010204900,Os10g0411900 LOC_Os10g27200 OsJ_31498 OSNPB_100411900,Os08g0496700 OSNPB_080496700,Os09g0341901 OSNPB_090341901,Os05g0345900 OSNPB_050345900 ENOG411DQX1 PCMP-H35,MEF7 Q9FIB2,A0A1P8BCH0 PP373_ARATH,A0A1P8BCH0_ARATH Putative pentatricopeptide repeat-containing protein At5g09950,Tetratricopeptide repeat (TPR)-like superfamily protein 110775,110148 Putative pentatricopeptide repeat-containing protein At5g09950,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mRNA modification [GO:0016556]; RNA modification [GO:0009451],zinc ion binding [GO:0008270] locus:2178188; AT5G09950 Pentatricopeptide repeat-containing protein Os01g0589900 protein A0A0P0V4P7 A0A0P0V4P7_ORYSJ Os01g0589900 OSNPB_010589900 ENOG411E7CU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0205633 protein,Os12g0206700 protein (Fragment) A0A0P0Y7Z6,A0A0P0Y7X9 A0A0P0Y7Z6_ORYSJ,A0A0P0Y7X9_ORYSJ Os12g0205633 OSNPB_120205633,Os12g0206700 OSNPB_120206700 ENOG411E7CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfite exporter TauE/SafE NA NA NA NA NA NA NA ENOG411E7CY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411E7CM Q9C567 Q9C567_ARATH Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B (At5g22210) (Uncharacterized protein At5g22210) 9312 Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B (At5g22210) (Uncharacterized protein At5g22210) transferase activity [GO:0016740] locus:504956454; AT5G22210 NA NA NA NA NA NA NA NA ENOG411EFDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Probable N6-adenine methyltransferase NA NA NA NA NA NA NA ENOG411EFDU GATA15 Q8LG10 GAT15_ARATH GATA transcription factor 15 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 16563 GATA transcription factor 15 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2083388; AT3G06740 ZnF_GATA NA NA NA NA NA NA NA ENOG411EFDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase Os02g0701800 protein A0A0P0VND7 A0A0P0VND7_ORYSJ Os02g0701800 OSNPB_020701800 ENOG411EFDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytoplasmic small heat shock protein class I NA NA NA NA NA NA NA ENOG411EFDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reduced folate carrier NA NA NA NA NA NA NA ENOG411EFDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411EFDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosome-binding factor A NA NA NA NA NA NA NA ENOG411EFDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFDI F13M14.12,F13M14.13 Q9SQY9,Q9SQY8,Q9M0P7,A8MRL4,F4J3U4 Q9SQY9_ARATH,Q9SQY8_ARATH,Q9M0P7_ARATH,A8MRL4_ARATH,F4J3U4_ARATH Duplicated homeodomain-like superfamily protein (I-box binding factor, putative) (MYB transcription factor) (Myb family transcription factor) (Uncharacterized protein F13M14.12),Homeodomain-like superfamily protein (I-box binding factor, putative) (Uncharacterized protein F13M14.13),Duplicated homeodomain-like superfamily protein (Uncharacterized protein At4g09450),Homeodomain-like superfamily protein 23933,32738,23112,29279,19344 Duplicated homeodomain-like superfamily protein (I-box binding factor, putative) (MYB transcription factor) (Myb family transcription factor) (Uncharacterized protein F13M14.12),Homeodomain-like superfamily protein (I-box binding factor, putative) (Uncharacterized protein F13M14.13),Duplicated homeodomain-like superfamily protein (Uncharacterized protein At4g09450),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2075760;,locus:2075775;,locus:2133667;,locus:504955889; AT3G10590,AT3G10580,AT4G09450,AT3G10585 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EFDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family 26.2 kDa heat shock protein, mitochondrial (OsHsp26.2),Os06g0219500 protein (Fragment) Q67X83,A0A0P0WUH9 HS26M_ORYSJ,A0A0P0WUH9_ORYSJ HSP26.2 Os06g0219500 LOC_Os06g11610 P0436F11.23,Os06g0219500 OSNPB_060219500 ENOG411EFDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EFDD Q8L8K9 Q8L8K9_ARATH At2g21237 (Transmembrane protein) 18554 At2g21237 (Transmembrane protein) integral component of membrane [GO:0016021] locus:504955999; AT2G21237 NA NA NA NA NA NA NA NA ENOG411EFDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411EFDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDA dl4035c O23448,Q0WWC4,B3H5G4 O23448_ARATH,Q0WWC4_ARATH,B3H5G4_ARATH Uncharacterized protein AT4g15990 (Uncharacterized protein dl4035c),Uncharacterized protein At4g16000,Uncharacterized protein 15485,10351,11012 Uncharacterized protein AT4g15990 (Uncharacterized protein dl4035c),Uncharacterized protein At4g16000,Uncharacterized protein locus:2129880;,locus:2129895;,locus:4515103403; AT4G15990,AT4G16000,AT4G16024 NA NA NA NA NA NA NA NA ENOG411EFDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EFD5 VQ5 Q3ED38 VQ5_ARATH VQ motif-containing protein 5 (AtVQ5) FUNCTION: May function as negative regulator of plant defense. {ECO:0000305|PubMed:22535423}. MISCELLANEOUS: Plants over-expressing VQ5 display enhanced disease symptoms after infection by the necrotrophic fungal pathogen B.cinerea. {ECO:0000269|PubMed:22535423}. 25137 VQ motif-containing protein 5 (AtVQ5) nucleus [GO:0005634]; defense response [GO:0006952] locus:504956097; AT1G32585 NA NA NA NA NA NA NA NA ENOG411EFD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein NA NA NA NA NA NA NA ENOG411EFD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Solute carrier family 4 (Anion exchanger) member 1 adaptor protein NA NA NA NA NA NA NA ENOG411EFD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0272800 protein (Fragment) A0A0P0V0U0 A0A0P0V0U0_ORYSJ Os01g0272800 OSNPB_010272800 ENOG411EFD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin light chain NA NA NA NA NA NA NA ENOG411EFD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EFD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EFD2 PDCB4 Q9FZD0,Q93V72,A0A1P8AU10 CBX8D_ARATH,PDCB4_ARATH,A0A1P8AU10_ARATH Carbohydrate-binding X8 domain-containing protein,PLASMODESMATA CALLOSE-BINDING PROTEIN 4 (AtPDCB4),Plasmodesmata callose-binding protein 4 20039,22076,21691 Carbohydrate-binding X8 domain-containing protein,PLASMODESMATA CALLOSE-BINDING PROTEIN 4 (AtPDCB4),Plasmodesmata callose-binding protein 4 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; (1->3)-beta-D-glucan binding [GO:0001872]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] TISSUE SPECIFICITY: Expressed in the sieve elements. {ECO:0000269|PubMed:25081480}. locus:2197980;,locus:505006212; AT1G26450,AT1G69295 X8 domain NA NA NA NA NA NA NA ENOG411EBZG ABCG34,ABCG39 Q7PC87,Q7PC84 AB34G_ARATH,AB39G_ARATH ABC transporter G family member 34 (ABC transporter ABCG.34) (AtABCG34) (Pleiotropic drug resistance protein 6),ABC transporter G family member 39 (ABC transporter ABCG.39) (AtABCG39) (Pleiotropic drug resistance protein 11) FUNCTION: May be a general defense protein. {ECO:0000250}. 164206,165193 ABC transporter G family member 34 (ABC transporter ABCG.34) (AtABCG34) (Pleiotropic drug resistance protein 6),ABC transporter G family member 39 (ABC transporter ABCG.39) (AtABCG39) (Pleiotropic drug resistance protein 11) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; drug transmembrane transport [GO:0006855]; response to reactive oxygen species [GO:0000302] TISSUE SPECIFICITY: Expressed in roots at low levels. {ECO:0000269|PubMed:12430018}. locus:2044893;,locus:2019693; AT2G36380,AT1G66950 pleiotropic drug resistance protein 2-like NA NA NA NA NA NA NA ENOG411EBZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EBZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411DV79 SRM1 Q9FNN6 SRM1_ARATH Transcription factor SRM1 (Myb-related protein SRM1) (Protein SALT-RELATED MYB 1) DISRUPTION PHENOTYPE: Increased tolerance to salt stress leading to better seedling survival and enhanced seed germination on NaCl- and KCl-containing medium, due to a reduced sensitivity to and reduced levels of abscisic acid (ABA), as well as a reduced induction of stress-related genes. Altered leaf morphology, both in shape and in size. {ECO:0000269|PubMed:26243618}. FUNCTION: Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. 31814 Transcription factor SRM1 (Myb-related protein SRM1) (Protein SALT-RELATED MYB 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of response to salt stress [GO:1901001]; positive regulation of abscisic acid biosynthetic process [GO:0010116]; positive regulation of developmental vegetative growth [GO:1905615]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of leaf morphogenesis [GO:1901371]; regulation of transcription, DNA-templated [GO:0006355]; response to gibberellin [GO:0009739]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. locus:2159607; AT5G08520 Transcription factor Os04g0676700 protein (Fragment) A0A0P0WGF6,A0A0P0WGG5 A0A0P0WGF6_ORYSJ,A0A0P0WGG5_ORYSJ Os04g0676700 OSNPB_040676700 ENOG411DV78 RZ1C,RZ1B,AtRZ-1c,AtRZ-1b Q8RWN5,O22703,C0Z388,A0A1P8ATT3,A0A1P8ATT4 RZ1C_ARATH,RZ1B_ARATH,C0Z388_ARATH,A0A1P8ATT3_ARATH,A0A1P8ATT4_ARATH Glycine-rich RNA-binding protein RZ1C (AtRZ-1C),Glycine-rich RNA-binding protein RZ1B (AtRZ-1a),AT5G04280 protein (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein),RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20850334}. FUNCTION: Binds RNA and DNA sequences non-specifically. May be involved in tolerance to cold stress. {ECO:0000269|PubMed:20850334}. 33486,34398,29303,29378,30164 Glycine-rich RNA-binding protein RZ1C (AtRZ-1C),Glycine-rich RNA-binding protein RZ1B (AtRZ-1a),AT5G04280 protein (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein),RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein nucleolus [GO:0005730]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; chromatin DNA binding [GO:0031490]; mRNA binding [GO:0003729]; nucleic acid binding [GO:0003676]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of mRNA splicing, via spliceosome [GO:0048026]; response to cold [GO:0009409]; response to water deprivation [GO:0009414],nuclear speck [GO:0016607]; nucleus [GO:0005634]; DNA binding [GO:0003677]; nucleic acid binding [GO:0003676]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of mRNA splicing, via spliceosome [GO:0048026]; response to cold [GO:0009409]; response to water deprivation [GO:0009414],RNA binding [GO:0003723]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, floral buds and flowers. {ECO:0000269|PubMed:20850334}. locus:2179939;,locus:2036520; AT5G04280,AT1G60650 Zinc knuckle Os03g0681900 protein (Putative RNA-binding protein) (RNA recognition motif family protein, expressed) (cDNA clone:001-038-G09, full insert sequence) (cDNA clone:001-044-H07, full insert sequence) Q7Y008 Q7Y008_ORYSJ OSJNBb0070O09.4 LOC_Os03g47800 Os03g0681900 OsJ_12125 OSNPB_030681900 ENOG411DV77 Q9SAA6,A0A1P8AWU6 PPR34_ARATH,A0A1P8AWU6_ARATH Pentatricopeptide repeat-containing protein At1g11710, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein 73983,70884 Pentatricopeptide repeat-containing protein At1g11710, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2027382; AT1G11710 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DV76 POB1 Q9FPW6,O04615,O82343 POB1_ARATH,Y4116_ARATH,Y2626_ARATH BTB/POZ domain-containing protein POB1 (POZ/BTB CONTAINING-PROTEIN 1) (AtPOB1),BTB/POZ domain-containing protein At4g01160,BTB/POZ domain-containing protein At2g46260 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 63066,59237,63037 BTB/POZ domain-containing protein POB1 (POZ/BTB CONTAINING-PROTEIN 1) (AtPOB1),BTB/POZ domain-containing protein At4g01160,BTB/POZ domain-containing protein At2g46260 Cul3-RING ubiquitin ligase complex [GO:0031463]; nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; protein ubiquitination [GO:0016567]; response to red light [GO:0010114],Cul3-RING ubiquitin ligase complex [GO:0031463]; nucleus [GO:0005634]; protein ubiquitination [GO:0016567]; response to red light [GO:0010114] locus:2082827;,locus:2063026; AT3G61600,AT4G01160,AT2G46260 BTB POZ domain-containing protein Os06g0507400 protein (Putative GAMYB-binding protein) (cDNA clone:J013066L01, full insert sequence),GAMYB-binding protein-like (Os06g0507300 protein) (cDNA clone:002-181-D08, full insert sequence),Os02g0260700 protein (Putative BTB/POZ domain-containing protein) (cDNA clone:J023123D22, full insert sequence),Os02g0260700 protein (Fragment) Q5Z9M6,Q5Z9M7,Q6K229,A0A0P0VHB5 Q5Z9M6_ORYSJ,Q5Z9M7_ORYSJ,Q6K229_ORYSJ,A0A0P0VHB5_ORYSJ Os06g0507400 Os06g0507400 OsJ_21492 OSNPB_060507400 P0561B08.19,Os06g0507300 OsJ_21491 OSNPB_060507300 P0561B08.18,Os02g0260700 B1178F07.33 OsJ_06150 OSJNBa0060K08.43 OSNPB_020260700,Os02g0260700 OSNPB_020260700 ENOG411DV75 PLR1 Q56Y42 PLR1_ARATH Pyridoxal reductase, chloroplastic (EC 1.1.1.65) FUNCTION: Catalyzes the reduction of pyridoxal (PL) with NADPH and oxidation of pyridoxine (PN) with NADP(+). Involved in the PLP salvage pathway. {ECO:0000269|PubMed:21533842}. MISCELLANEOUS: Mutants with reduced expression of PLR1 have lower levels of total B6 vitamers but there is no reduction in PN or PNP levels. {ECO:0000305|PubMed:21533842}. PATHWAY: Cofactor degradation; B6 vitamer degradation; pyridoxal from pyridoxine (dehydrogenase route): step 1/1. ARA:MONOMER-17899;MetaCyc:MONOMER-17899; 1.1.1.65 40576 Pyridoxal reductase, chloroplastic (EC 1.1.1.65) chloroplast [GO:0009507]; NADPH binding [GO:0070402]; pyridoxine:NADP 4-dehydrogenase activity [GO:0050236]; pyridoxal 5'-phosphate salvage [GO:0009443]; pyridoxal biosynthetic process [GO:0042821]; vitamin B6 catabolic process [GO:0042820] TISSUE SPECIFICITY: Expressed in cotyledons, embryos, flowers, shoots, roots and seeds. {ECO:0000269|PubMed:21533842}. locus:2168601; AT5G53580 aldo keto reductase Aldo/keto reductase family protein, putative, expressed (Os10g0517400 protein) (Putative aldo/keto reductase) (cDNA clone:J013161O11, full insert sequence) Q7XCS4 Q7XCS4_ORYSJ Os10g0517400 LOC_Os10g37330 Os10g0517400 OsJ_32166 OSJNBa0076F20.16 OSNPB_100517400 ENOG411DV74 Q0WRW8 B561K_ARATH Cytochrome b561 and DOMON domain-containing protein At3g07570 (Protein b561A.tha11) FUNCTION: May act as a catecholamine-responsive trans-membrane electron transporter. {ECO:0000269|PubMed:15022831}. 40444 Cytochrome b561 and DOMON domain-containing protein At3g07570 (Protein b561A.tha11) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2091097; AT3G07570 DOMON domain Os01g0895200 protein,Cytochrome b561 and DOMON domain-containing protein Q0JGZ0,Q7XU54 Q0JGZ0_ORYSJ,Q7XU54_ORYSJ Os01g0895200 Os01g0895200 OSNPB_010895200,Os04g0495400 OsJ_15315 OSJNBa0067K08.1 OSJNBb0091E11.23 OSNPB_040495400 ENOG411DV73 B''BETA,B''EPSILON,B''DELTA,B''ALPHA,B''GAMMA Q5QIT3,Q84JI6,Q9SLI8,Q9XGR4,Q8VZQ4,A0A1P8AMC2,A0A1P8BH17,A0A1P8AMC5,A0A1P8AMG0 2AB2B_ARATH,2AB2E_ARATH,2AB2D_ARATH,2AB2A_ARATH,2AB2C_ARATH,A0A1P8AMC2_ARATH,A0A1P8BH17_ARATH,A0A1P8AMC5_ARATH,A0A1P8AMG0_ARATH Serine/threonine protein phosphatase 2A regulatory subunit B''beta (AtB''beta) (Serine/threonine protein phosphatase 2A regulatory subunit B'' beta 1 isoform) (PP2A, B'' subunit, beta 1 isoform),Probable serine/threonine protein phosphatase 2A regulatory subunit B''epsilon (AtB''epsilon),Probable serine/threonine protein phosphatase 2A regulatory subunit B''delta (AtB''delta),Serine/threonine protein phosphatase 2A regulatory subunit B''alpha (AtB''alpha) (PP2A, B'' subunit, alpha isoform),Probable serine/threonine protein phosphatase 2A regulatory subunit B''gamma (AtB''gamma) (Serine/threonine protein phosphatase 2A regulatory subunit B''beta 2 isoform) (AtB''beta 2) (PP2A, B'' subunit, beta 2 isoform),Calcium-binding EF hand family protein,Calcium-binding EF-hand family protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21478440}. FUNCTION: Regulatory subunit of type 2A protein phosphatase. Involved in post-transcriptional regulation of HMGR but not in root growth regulation in response to salt. {ECO:0000269|PubMed:21478440}.,FUNCTION: Probable regulatory subunit of type 2A protein phosphatase. {ECO:0000250}.,FUNCTION: Regulatory subunit of type 2A protein phosphatase. Not involved in HMGR regulation in seedlings grown in standard medium, but negatively regulates root growth in response to salt. {ECO:0000269|PubMed:21478440}. R-ATH-113501;R-ATH-69231;R-ATH-69273; 61977,61239,61939,62325,62019,54550,66442,57790,38809 Serine/threonine protein phosphatase 2A regulatory subunit B''beta (AtB''beta) (Serine/threonine protein phosphatase 2A regulatory subunit B'' beta 1 isoform) (PP2A, B'' subunit, beta 1 isoform),Probable serine/threonine protein phosphatase 2A regulatory subunit B''epsilon (AtB''epsilon),Probable serine/threonine protein phosphatase 2A regulatory subunit B''delta (AtB''delta),Serine/threonine protein phosphatase 2A regulatory subunit B''alpha (AtB''alpha) (PP2A, B'' subunit, alpha isoform),Probable serine/threonine protein phosphatase 2A regulatory subunit B''gamma (AtB''gamma) (Serine/threonine protein phosphatase 2A regulatory subunit B''beta 2 isoform) (AtB''beta 2) (PP2A, B'' subunit, beta 2 isoform),Calcium-binding EF hand family protein,Calcium-binding EF-hand family protein cytosol [GO:0005829]; calcium ion binding [GO:0005509],calcium ion binding [GO:0005509],mitochondrion [GO:0005739]; calcium ion binding [GO:0005509],cytoplasm [GO:0005737]; nucleus [GO:0005634]; calcium ion binding [GO:0005509] locus:2150446;,locus:2024254;,locus:2020043;,locus:2167623;,locus:2150471; AT5G28850,AT1G03960,AT1G54450,AT5G44090,AT5G28900 serine threonine-protein phosphatase 2A regulatory subunit B EF hand family protein, expressed (Os10g0476600 protein) (cDNA clone:J013116N14, full insert sequence) (cDNA clone:J033037A09, full insert sequence),Os02g0191700 protein Q7XDE0,Q69M01 Q7XDE0_ORYSJ,Q69M01_ORYSJ Os10g0476600 LOC_Os10g33680 Os10g0476600 OsJ_31883 OSNPB_100476600,P0453H10.11 Os02g0191700 OSNPB_020191700 ENOG411DV72 UBC24 Q8VY10 UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24 (EC 2.3.2.23) (AtPHO2) (E2 ubiquitin-conjugating enzyme 24) (Ubiquitin carrier protein 24) (Ubiquitin-protein ligase 24) DISRUPTION PHENOTYPE: Plants are unable to regulate the amount of phosphate accumulated into shoots. {ECO:0000269|PubMed:16679417}. Elevated phosphate levels-L. Kleczkowski-2001 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (By similarity). Mediates PHO1 degradation through multivesicular body-mediated vacuolar proteolysis in response to inorganic phosphate (Pi) availability (PubMed:22634761). Negatively regulates the protein abundance of PHF1 and PHT1s under Pi-sufficient conditions by facilitating the degradation of PHT1 proteins at the endomembrane (PubMed:24122829). {ECO:0000250|UniProtKB:P42743, ECO:0000269|PubMed:22634761, ECO:0000269|PubMed:24122829}. MISCELLANEOUS: MicroRNA399 (miR399) can be sequestered by IPS1, a non-protein coding RNA containing a motif with sequence complementarity to miR399, but with a mismatched loop at the expected miRNA cleavage site. Thus IPS1 mimics the target of miR399 to block the cleavage of UBC24/PHO2 under Pi-deficient conditions. {ECO:0000269|PubMed:17643101}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 100484 Probable ubiquitin-conjugating enzyme E2 24 (EC 2.3.2.23) (AtPHO2) (E2 ubiquitin-conjugating enzyme 24) (Ubiquitin carrier protein 24) (Ubiquitin-protein ligase 24) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; cellular protein catabolic process [GO:0044257]; cellular response to phosphate starvation [GO:0016036]; phosphate ion homeostasis [GO:0055062]; phosphate ion transport [GO:0006817]; regulation of phosphate transmembrane transport [GO:2000185] DEVELOPMENTAL STAGE: Up-regulated in senescing leaves and maturating seeds. {ECO:0000269|PubMed:16679424}. TISSUE SPECIFICITY: Expressed in the vascular tissues of cotyledons, leaves, roots, sepals, filaments, anthers and junctions between the inflorescence stems and siliques. {ECO:0000269|PubMed:16679417, ECO:0000269|PubMed:16679424}. locus:2057589; AT2G33770 ubiquitin-conjugating enzyme E2 NA NA NA NA NA NA NA ENOG411DV71 F4HP69 F4HP69_ARATH Transducin/WD40 repeat-like superfamily protein 90097 Transducin/WD40 repeat-like superfamily protein DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:505006132; AT1G19485 AT_hook NA NA NA NA NA NA NA ENOG411DV70 OCT1 F4KDA5 MIP_ARATH Mitochondrial intermediate peptidase, mitochondrial (EC 3.4.24.-) (AtOCT1) FUNCTION: Aminopeptidase which cleaves preproteins, imported into the mitochondrion, to their mature size. Could cleave both preproteins and preprotein intermediates already cleaved by the mitochondrial processing peptidase (MPP). {ECO:0000269|PubMed:25732537}. 3.4.24.- 79925 Mitochondrial intermediate peptidase, mitochondrial (EC 3.4.24.-) (AtOCT1) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; mitochondrion [GO:0005739]; aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; peptide metabolic process [GO:0006518]; protein processing involved in protein targeting to mitochondrion [GO:0006627] locus:2153067; AT5G51540 mitochondrial intermediate Os06g0686500 protein (Putative mitochondrial intermediate peptidase) Q653H3 Q653H3_ORYSJ Os06g0686500 Os06g0686500 OSNPB_060686500 P0009H10.52 P0623A10.10 ENOG411DV7N Q5XVC7 Y2048_ARATH WEB family protein At2g40480 58481 WEB family protein At2g40480 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2061913; AT2G40480 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411DV7M A0A1P8B8L2,F4JV54,A0A1P8B8L5 A0A1P8B8L2_ARATH,F4JV54_ARATH,A0A1P8B8L5_ARATH Phosphoinositide binding protein 28980,45031,47203 Phosphoinositide binding protein locus:2125667; AT4G32780 Pfam:DUF828 Os01g0231600 protein A0A0P0V087 A0A0P0V087_ORYSJ Os01g0231600 OSNPB_010231600 ENOG411DV7K Q9C8X8 Q9C8X8_ARATH At1g36320/F7F23_4 (Uncharacterized protein F7F23.4) 47174 At1g36320/F7F23_4 (Uncharacterized protein F7F23.4) locus:2035957; AT1G36320 NA Os02g0291500 protein (Fragment) A0A0P0VHU3 A0A0P0VHU3_ORYSJ Os02g0291500 OSNPB_020291500 ENOG411DV7J CAPH2 Q9LUR0 CNDH2_ARATH Condensin-2 complex subunit H2 (Chromosome-associated protein H2) (AtCAP-H2) (Non-SMC condensin II complex subunit H2) (Protein HYPERSENSITIVE TO EXCESS BORON 2) (Hypersensitive to excess B 2) DISRUPTION PHENOTYPE: Enhanced sensitivity to excess boron (B), to zeocin, which induces DNA double-strand breaks (DSBs), and to aphidicolin, which blocks DNA replication, probably due to the accumulation of DSBs. Reduced root length, especially in the presence of genotoxic stressors, with twisted shape, ectopic lateral root formation and dense root hairs, as well as short meristematic zones. {ECO:0000269|PubMed:21917552}. FUNCTION: Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture (By similarity). The condensin-2 complex plays a role in DNA damage repair or in protecting the genome from certain genotoxic stressors (e.g. boron excess, zeocin and aphidicolin). {ECO:0000250, ECO:0000269|PubMed:21917552}. R-ATH-2299718; 75865 Condensin-2 complex subunit H2 (Chromosome-associated protein H2) (AtCAP-H2) (Non-SMC condensin II complex subunit H2) (Protein HYPERSENSITIVE TO EXCESS BORON 2) (Hypersensitive to excess B 2) condensed chromosome [GO:0000793]; nucleolus [GO:0005730]; chromosome condensation [GO:0030261]; positive regulation of DNA repair [GO:0045739]; positive regulation of response to DNA damage stimulus [GO:2001022] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flower buds and flowers. {ECO:0000269|PubMed:15883832}. locus:2089298; AT3G16730 condensin-2 complex subunit Os07g0517300 protein (Fragment) Q0D620 Q0D620_ORYSJ Os07g0517300 Os07g0517300 OSNPB_070517300 ENOG411DV7I A0A1P8APW5,F4ICK6 A0A1P8APW5_ARATH,F4ICK6_ARATH Plant viral-response family protein,Serine/threonine-protein phosphatase 7 long form-like protein 29343,108929 Plant viral-response family protein,Serine/threonine-protein phosphatase 7 long form-like protein integral component of membrane [GO:0016021],membrane [GO:0016020] locus:2031720; AT1G32120 Family of unknown function (DUF716) Os11g0621000 protein (Plant viral-response family protein, expressed) (cDNA clone:J013072D03, full insert sequence) Q2R126 Q2R126_ORYSJ LOC_Os11g40570 Os11g0621000 OSNPB_110621000 ENOG411DV7H F14P13.19 Q9SS33 Q9SS33_ARATH AT3g10210/F14P13_19 (F14P13.19 protein) (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) 27537 AT3g10210/F14P13_19 (F14P13.19 protein) (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) locus:2076234; AT3G10210 cellular retinaldehyde-binding triple function C-terminal Os01g0948300 protein (Rho-GTPase-activating protein-like) (cDNA clone:J033086E01, full insert sequence) Q5JMU5 Q5JMU5_ORYSJ Os01g0948300 OsJ_04754 OSNPB_010948300 P0466H10.36 ENOG411DV7G XTH23,XTH22,XTH25 Q38910,Q38857,Q38907 XTH23_ARATH,XTH22_ARATH,XTH25_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 23 (At-XTH23) (XTH-23) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 22 (At-XTH22) (XTH-22) (EC 2.4.1.207) (Touch protein 4),Probable xyloglucan endotransglucosylase/hydrolase protein 25 (At-XTH25) (XTH-25) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Its induction in case of mechanical stress, suggests that it may contribute in the adaptive changes in morphogenesis by being recruited to alter tissues tensil strength, or flexibility, enabling adaptation to mechanically stressful environments. {ECO:0000269|PubMed:7580251}. ARA:AT4G25810-MONOMER;,ARA:AT5G57560-MONOMER;,ARA:AT5G57550-MONOMER; 2.4.1.207 32064,32093,32573 Probable xyloglucan endotransglucosylase/hydrolase protein 23 (At-XTH23) (XTH-23) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 22 (At-XTH22) (XTH-22) (EC 2.4.1.207) (Touch protein 4),Probable xyloglucan endotransglucosylase/hydrolase protein 25 (At-XTH25) (XTH-25) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; plant-type cell wall organization [GO:0009664]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to mechanical stimulus [GO:0009612]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Highly expressed. Predominantly expressed in green siliques. Expressed in young expanding leaves, trichomes, lateral root primordia, vascular tissue, abscission zones and elongating hypocols. Following wind stimulation, it decreases in the leaves of wind-stimulated plants, while it strongly increases in sites around cells of the pith parenchyma, between the vascular elements, and within the epidermis. {ECO:0000269|PubMed:11673616, ECO:0000269|PubMed:7580251, ECO:0000269|PubMed:9414546}.,TISSUE SPECIFICITY: Expressed in siliques. Not detected in other tested tissues. {ECO:0000269|PubMed:10557219}. locus:2117567;,locus:2174497;,locus:2174597; AT4G25810,AT5G57560,AT5G57550 Xyloglucan endotransglucosylase hydrolase protein Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207),Os06g0696400 protein (Xyloglucan endotransglycosylase-like),Os06g0697000 protein (Fragment) Q5Z6H3,Q5Z6G7,Q5Z6H2,A0A0P0X0J9 Q5Z6H3_ORYSJ,Q5Z6G7_ORYSJ,Q5Z6H2_ORYSJ,A0A0P0X0J9_ORYSJ P0028E05.17-1 Os06g0696400 P0622F03.43-1 OsJ_22491 OSNPB_060696400,Os06g0697000 OSNPB_060697000 P0028E05.23,P0028E05.17-2 Os06g0696400 P0622F03.43-2 OSNPB_060696400,Os06g0697000 OSNPB_060697000 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DV7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chalcone and stilbene synthases N-terminal domain containing protein Chalcone and stilbene synthases, N-terminal domain containing protein (Os11g0529800 protein),Os12g0176050 protein,Chalcone and stilbene synthases, N-terminal domain containing protein, expressed (Os11g0529500 protein),Os05g0496300 protein (Fragment),Os11g0529900 protein Q2R3A5,B9GC48,Q2R3A8,A0A0P0WP82,A0A0P0Y2P6 Q2R3A5_ORYSJ,B9GC48_ORYSJ,Q2R3A8_ORYSJ,A0A0P0WP82_ORYSJ,A0A0P0Y2P6_ORYSJ LOC_Os11g32610 Os11g0529800 OSNPB_110529800,Os12g0176050 OsJ_35403 OSNPB_120176050,LOC_Os11g32580 Os11g0529500 OsJ_34104 OSNPB_110529500,Os05g0496300 OSNPB_050496300,Os11g0529900 OSNPB_110529900 ENOG411DV7E TAF12B Q940A7 TA12B_ARATH Transcription initiation factor TFIID subunit 12b (Protein CYTOKININ-HYPERSENSITIVE 1) (Protein ENHANCED ETHYLENE RESPONSE 4) (TBP-associated factor 12b) (AtTAF12b) Roots are extremely curled. Dark-grown seedlings are hypersensitive to ethylene. Extreme hypocotyl shortening is observed when grown on 100ul /L ethylene.,Extreme hypocotyl shortening when grown in the dark. Much smaller than either of the single mutants. Plants die at or near the time at which they flower.,eer4 partially restores the ethylene responsiveness to the ein3-1 mutant. Exposure of the eer4;ein3-1 mutant to saturating levels of ethylene results in moderate hypocotyl inhibition along with the generation of a pronounced apical hook.,Identical to the ein2-5 single mutant.There is no noticeable effect on hypocotyl length of dark grown plants supplemented with ethylene. FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Required for the expression of a subset of ethylene-responsive genes. Probably involved in the negative regulation of cytokinin sensitivity. {ECO:0000269|PubMed:17526916}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 74805 Transcription initiation factor TFIID subunit 12b (Protein CYTOKININ-HYPERSENSITIVE 1) (Protein ENHANCED ETHYLENE RESPONSE 4) (TBP-associated factor 12b) (AtTAF12b) nucleus [GO:0005634]; SAGA complex [GO:0000124]; transcription factor TFIID complex [GO:0005669]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; RNA polymerase II activating transcription factor binding [GO:0001102]; TBP-class protein binding [GO:0017025]; translation initiation factor activity [GO:0003743]; cytokinin-activated signaling pathway [GO:0009736]; histone H3 acetylation [GO:0043966]; jasmonic acid mediated signaling pathway [GO:0009867]; regulation of ethylene-activated signaling pathway [GO:0010104]; regulation of transcription, DNA-templated [GO:0006355]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:15527982, ECO:0000269|PubMed:17526916}. locus:2018861; AT1G17440 Transcription initiation factor TFIID subunit A Os01g0846900 protein (Transcription initiation factor IID (TFIID) subunit A-like protein) Q5N796 Q5N796_ORYSJ Os01g0846900 Os01g0846900 OSNPB_010846900 P0005H10.8 P0446B05.36 ENOG411DV7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) NA NA NA NA NA NA NA ENOG411DV7C Q9FN21 Q9FN21_ARATH FAD-dependent oxidoreductase family protein (Similarity to unknown protein) (Uncharacterized protein At5g67290) 43111 FAD-dependent oxidoreductase family protein (Similarity to unknown protein) (Uncharacterized protein At5g67290) cytoplasm [GO:0005737]; oxidoreductase activity [GO:0016491] locus:2158202; AT5G67290 )-oxidoreductase Os07g0155100 protein (Putative oxidoreductase, FAD-binding) (cDNA clone:001-107-D11, full insert sequence),Os01g0594800 protein (Fragment) Q69QN3,A0A0P0V4T1 Q69QN3_ORYSJ,A0A0P0V4T1_ORYSJ Os07g0155100 OSJNBa0024L18.9 OSNPB_070155100,Os01g0594800 OSNPB_010594800 ENOG411DV7B A0A1P8AU06,F4HSS8 A0A1P8AU06_ARATH,F4HSS8_ARATH Pseudouridine synthase family protein 40028,56552 Pseudouridine synthase family protein pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119] locus:2034398; AT1G20410 tRNA pseudouridine synthase Os04g0561700 protein B9FBY4 B9FBY4_ORYSJ Os04g0561700 OsJ_15774 OSNPB_040561700 ENOG411DV7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DV7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os04g0481700 protein Q0JCB0 Q0JCB0_ORYSJ Os04g0481700 Os04g0481700 OSNPB_040481700 ENOG411DV7Y NCS1 Q9LZD0 NCS1_ARATH Purine-uracil permease NCS1 (Nucleobase cation symporter 1) (AtNCS1) (Plastidic nucleobase transporter) (Uracil/purine transport protein NCS1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22616996}. FUNCTION: Nucleobase-proton symporter that facilitates the uptake of nucleobases in the cells. Can transport adenine, guanine and uracil (PubMed:22616996, PubMed:22474184, PubMed:24621654). Contributes to uracil import into plastids for plastidic uracil salvage which is essential for plant growth and development (PubMed:22474184). {ECO:0000269|PubMed:22474184, ECO:0000269|PubMed:22616996, ECO:0000269|PubMed:24621654}. 65356 Purine-uracil permease NCS1 (Nucleobase cation symporter 1) (AtNCS1) (Plastidic nucleobase transporter) (Uracil/purine transport protein NCS1) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plastid envelope [GO:0009526]; nucleobase transmembrane transporter activity [GO:0015205]; pyrimidine nucleobase salvage [GO:0043100] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, siliques and seeds. {ECO:0000269|PubMed:22474184}. locus:505006580; AT5G03555 allantoin Os02g0666700 protein (Putative uracil transport protein) Q6ESG6 Q6ESG6_ORYSJ Os02g0666700 Os02g0666700 OJ1486_E07.20 OSNPB_020666700 P0461B08.35 ENOG411DV7X ASHR3 Q949T8 ASHR3_ARATH Histone-lysine N-methyltransferase ASHR3 (EC 2.1.1.43) (ASH1-related protein 3) (Protein SET DOMAIN GROUP 4) (Protein stamen loss) FUNCTION: Histone methyltransferase (By similarity). Involved in stamen development. {ECO:0000250}. R-ATH-3214841;R-ATH-5693565; 2.1.1.43 56122 Histone-lysine N-methyltransferase ASHR3 (EC 2.1.1.43) (ASH1-related protein 3) (Protein SET DOMAIN GROUP 4) (Protein stamen loss) chromatin [GO:0000785]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: First observed at low levels in the vasculature and around hydathodes of developing leaves. In flowers, restricted to anthers tapetum at a post-meiosis stage, to filaments, and to microspores during their development. Disappears as pollen matures. In developing roots, expressed throughout the lower part, in the cap, in the epidermis and in non-epidermal tissue in the division and elongation zone. Also detected in cells lining lateral root formation. TISSUE SPECIFICITY: Expressed in roots, flowers and buds, the anther and in stamen filaments. {ECO:0000269|PubMed:17978851}. locus:2126714; AT4G30860 Histone-lysine n-methyltransferase NA NA NA NA NA NA NA ENOG411DV7W NPSN11 Q944A9 NPS11_ARATH Novel plant SNARE 11 (AtNPSN11) FUNCTION: t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation. 29872 Novel plant SNARE 11 (AtNPSN11) cell plate [GO:0009504]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; cytokinesis by cell plate formation [GO:0000911]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280] TISSUE SPECIFICITY: Expressed in roots, stems, flower, siliques, expanding leaves, but not in mature leaves. Not limited to dividing cells. locus:2063459; AT2G35190 novel plant snare Os06g0715100 protein (Putative NPSN12) (SNARE 11) (cDNA clone:001-019-G10, full insert sequence),Os06g0715100 protein (Putative NPSN12) (cDNA clone:J023002D18, full insert sequence) Q5Z9Q1,Q5Z9Q0 Q5Z9Q1_ORYSJ,Q5Z9Q0_ORYSJ P0481E08.11-2 NPSN11 Os06g0715100 OSNPB_060715100,P0481E08.11-1 Os06g0715100 OSNPB_060715100 ENOG411DV7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA amino acid permease family protein Os01g0945600 protein,Os01g0945300 protein (Putative GABA-specific permease) (cDNA clone:J013023D09, full insert sequence) (cDNA clone:J013146P21, full insert sequence),Os01g0945200 protein,Os01g0945100 protein (Fragment),Os01g0945700 protein B9EWF0,Q5JKJ0,B9EWE9,A0A0P0VCX1,A0A0P0VCT7 B9EWF0_ORYSJ,Q5JKJ0_ORYSJ,B9EWE9_ORYSJ,A0A0P0VCX1_ORYSJ,A0A0P0VCT7_ORYSJ Os01g0945600 OsJ_04737 OSNPB_010945600,Os01g0945300 OSNPB_010945300 P0614D08.28,Os01g0945200 OsJ_04735 OSNPB_010945200,Os01g0945100 OSNPB_010945100,Os01g0945700 OSNPB_010945700 ENOG411DV7U T5C2_100 Q9M179,F4HRW0 Q9M179_ARATH,F4HRW0_ARATH ELMO/CED-12 family protein (Uncharacterized protein T5C2_100),ELMO/CED-12 family protein 24358,32376 ELMO/CED-12 family protein (Uncharacterized protein T5C2_100),ELMO/CED-12 family protein locus:2102276;,locus:2019544; AT3G43400,AT1G67400 ELMO domain-containing protein A-like Os11g0483900 protein (Phagocytosis and cell motility protein ELMO1, putative, expressed) (cDNA clone:J023051L23, full insert sequence) Q0ISP5 Q0ISP5_ORYSJ Os11g0483900 LOC_Os11g29350 Os11g0483900 OSNPB_110483900 ENOG411DV7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbon-nitrogen hydrolase Os06g0206000 protein (Fragment) A0A0P0WU26 A0A0P0WU26_ORYSJ Os06g0206000 OSNPB_060206000 ENOG411DV7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation H( ) antiporter Os08g0117800 protein (Putative cation/hydrogen exchanger (CHX6b)) (cDNA clone:J023114J05, full insert sequence) Q6ZJ60 Q6ZJ60_ORYSJ Os08g0117800 OJ1005_B05.1 OsJ_25835 OSNPB_080117800 P0470F10.24 ENOG411DV7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA magnesium transporter NIPA2-like Probable magnesium transporter Q5TKG9,A0A0P0WPG9 Q5TKG9_ORYSJ,A0A0P0WPG9_ORYSJ Os05g0513400 Os05g0513400 B1155G07.13 OSNPB_050513400,Os05g0513400 OSNPB_050513400 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. ENOG411DV7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0117300 protein,Os07g0117900 protein Q8H5K0,A0A0P0X1Y6 Q8H5K0_ORYSJ,A0A0P0X1Y6_ORYSJ OJ1119_A04.115 Os07g0117300 OsJ_22889 OSNPB_070117300,Os07g0117900 OSNPB_070117900 ENOG411DV7P MNB8.4 Q9LVV4,A0A1P8BD54 Q9LVV4_ARATH,A0A1P8BD54_ARATH At5g52980 (ER-based factor for assembly of V-ATPase) (Uncharacterized protein At5g52980),ER-based factor for assembly of V-ATPase 24525,22155 At5g52980 (ER-based factor for assembly of V-ATPase) (Uncharacterized protein At5g52980),ER-based factor for assembly of V-ATPase integral component of membrane [GO:0016021] locus:2168372; AT5G52980 Endoplasmic reticulum-based factor for assembly of V-ATPase Os02g0225300 protein A0A0P0VGM9 A0A0P0VGM9_ORYSJ Os02g0225300 OSNPB_020225300 ENOG411DPSA A0A1P8BEX4,Q6NLR7,A0A1P8BEW8,F4KBA8 A0A1P8BEX4_ARATH,Q6NLR7_ARATH,A0A1P8BEW8_ARATH,F4KBA8_ARATH NAD(P)-binding Rossmann-fold superfamily protein,At5g04070 (NAD(P)-binding Rossmann-fold superfamily protein) 40558,40071,35309,40426 NAD(P)-binding Rossmann-fold superfamily protein,At5g04070 (NAD(P)-binding Rossmann-fold superfamily protein) integral component of membrane [GO:0016021] locus:2150680;,locus:2146127; AT5G04070,AT5G15940 dehydrogenase reductase SDR family member on chromosome Os09g0346600 protein Q0J2G1 Q0J2G1_ORYSJ Os09g0346600 Os09g0346600 OsJ_28993 OSNPB_090346600 ENOG411DPSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0580800 protein A0A0P0V4H2 A0A0P0V4H2_ORYSJ Os01g0580800 OSNPB_010580800 ENOG411DPSB Q9LNV0 Q9LNV0_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein (F22G5.35) (Similar to SRC2) (Similar to SRC2 dbj|BAA19769) 39014 Calcium-dependent lipid-binding (CaLB domain) family protein (F22G5.35) (Similar to SRC2) (Similar to SRC2 dbj|BAA19769) locus:2025002; AT1G07310 C2 domain C2 domain-containing protein-like (Os01g0853800 protein) (cDNA clone:001-205-A12, full insert sequence) (cDNA clone:001-207-G12, full insert sequence) (cDNA clone:001-208-D08, full insert sequence) (cDNA clone:J023007P09, full insert sequence) Q8W0F9 Q8W0F9_ORYSJ Os01g0853800 Os01g0853800 OsJ_04108 OSNPB_010853800 P0529E05.28 ENOG411DPSE TPS10,TPS03,TPS27,TPS23,TPS02,TPS24,TPS-CIN Q9ZUH4,A4FVP2,P0DI76,P0DI77,P0CJ42,Q9LRZ6,A0A1P8B7I0,A0A1P8B510,F4JA62 TPSA_ARATH,TPS03_ARATH,CIN1_ARATH,CIN2_ARATH,OCISA_ARATH,MYRS2_ARATH,A0A1P8B7I0_ARATH,A0A1P8B510_ARATH,F4JA62_ARATH Tricyclene synthase, chloroplastic (EC 4.2.3.105) ((E)-beta-ocimene synthase 0e23) (EC 4.2.3.106) (Myrcene synthase 1) (EC 4.2.3.15) (Terpenoid synthase 10) (AtTPS10),Tricyclene synthase, chloroplastic (EC 4.2.3.105) ((E)-beta-ocimene synthase) (EC 4.2.3.106) ((E,E)-alpha-farnesene synthase) (EC 4.2.3.46) (Terpenoid synthase 3) (AtTPS03),1,8-cineole synthase 1, chloroplastic (AtTPS-CIN1) (EC 4.2.3.108) (Limonene cyclase) (Terpenoid synthase 27) (AtTPS27),1,8-cineole synthase 2, chloroplastic (AtTPS-CIN2) (EC 4.2.3.108) (Limonene cyclase) (Terpenoid synthase 23) (AtTPS23),Putative inactive (E)-beta-ocimene synthase, chloroplastic (Inactive (E,E)-alpha-farnesene synthase) (Inactive terpenoid synthase 2) (AtTPS02),Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic (EC 4.2.3.15) (Terpenoid synthase 24) (AtTPS24),Terpene synthase 03,Terpene synthase 02,Terpene synthase-like sequence-1,8-cineole DISRUPTION PHENOTYPE: Reduction of TMTT, MeSA and (E,E)-alpha-farnesene emmission. No formation of (E)-beta-ocimene detected. {ECO:0000269|PubMed:20463089}. FUNCTION: Involved in monoterpene (C10) biosynthesis. The major product is beta-myrcene (56%) followed by (E)-beta-ocimene (20%) and minor amounts (less than 5%) of the cyclic monoterpene (-)-limonene, (+)-limonene, 2-carene and tricyclene. {ECO:0000269|PubMed:12624761}.,FUNCTION: Predominantly involved in sesquiterpenes (C15) biosynthesis. Using FPP as substrate, the major product is (E,E)-alpha-farnesene with minor amounts of (Z,E)-alpha-farnesene and (E,E)-beta-farnesene. Using GPP as substrate, could also be able in vitro to synthesize monoterpene (C10) with (E)-beta-ocimene as the major product and with (Z)-beta-ocimene and myrcene as minor products. {ECO:0000269|PubMed:12624761, ECO:0000269|PubMed:20463089}.,FUNCTION: Involved in monoterpene (C10) biosynthesis. The major product is 1,8-cineole (52%) followed by minor amounts of sabinene (14.5%), myrcene (13.3%), (-)-(1S)-beta-pinene (7.8%), (-)-(4S)-limonene (4.0%), (E)-beta-ocimene (2.7%), alpha-terpineol (2.4%), (-)-(1S)-alpha-pinene (1.9%), terpinolene (0.8%), and (+)-alpha-thujene (0.6%). {ECO:0000269|PubMed:15299125}.,FUNCTION: Involved in monoterpene (C10) biosynthesis. The major products are alpha- and beta-pinene, sabinene, beta-myrcene, (E)-beta-ocimene and limonene. {ECO:0000269|PubMed:12566586}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. MetaCyc:AT2G24210-MONOMER;,ARA:AT4G16740-MONOMER;MetaCyc:AT4G16740-MONOMER;,ARA:AT3G25810-MONOMER;MetaCyc:AT3G25810-MONOMER; 4.2.3.106;4.2.3.15;4.2.3.B40;,4.2.3.106;4.2.3.46;4.2.3.B40; 4.2.3.105; 4.2.3.106; 4.2.3.15,4.2.3.105; 4.2.3.106; 4.2.3.46,4.2.3.108,4.2.3.15 69279,65753,70455,7773,69812,44192,57924,52877 Tricyclene synthase, chloroplastic (EC 4.2.3.105) ((E)-beta-ocimene synthase 0e23) (EC 4.2.3.106) (Myrcene synthase 1) (EC 4.2.3.15) (Terpenoid synthase 10) (AtTPS10),Tricyclene synthase, chloroplastic (EC 4.2.3.105) ((E)-beta-ocimene synthase) (EC 4.2.3.106) ((E,E)-alpha-farnesene synthase) (EC 4.2.3.46) (Terpenoid synthase 3) (AtTPS03),1,8-cineole synthase 1, chloroplastic (AtTPS-CIN1) (EC 4.2.3.108) (Limonene cyclase) (Terpenoid synthase 27) (AtTPS27),1,8-cineole synthase 2, chloroplastic (AtTPS-CIN2) (EC 4.2.3.108) (Limonene cyclase) (Terpenoid synthase 23) (AtTPS23),Putative inactive (E)-beta-ocimene synthase, chloroplastic (Inactive (E,E)-alpha-farnesene synthase) (Inactive terpenoid synthase 2) (AtTPS02),Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic (EC 4.2.3.15) (Terpenoid synthase 24) (AtTPS24),Terpene synthase 03,Terpene synthase 02,Terpene synthase-like sequence-1,8-cineole chloroplast stroma [GO:0009570]; (E)-beta-ocimene synthase activity [GO:0034768]; magnesium ion binding [GO:0000287]; myrcene synthase activity [GO:0050551]; terpene synthase activity [GO:0010333]; tricyclene synthase activity [GO:0102701]; metabolic process [GO:0008152]; monoterpenoid biosynthetic process [GO:0016099]; response to herbivore [GO:0080027]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; (E)-beta-ocimene synthase activity [GO:0034768]; alpha-farnesene synthase activity [GO:0052578]; magnesium ion binding [GO:0000287]; myrcene synthase activity [GO:0050551]; terpene synthase activity [GO:0010333]; tricyclene synthase activity [GO:0102701]; metabolic process [GO:0008152]; response to herbivore [GO:0080027]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; sesquiterpenoid biosynthetic process [GO:0016106],chloroplast [GO:0009507]; 1,8-cineole synthase activity [GO:0102313]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpenoid biosynthetic process [GO:0016114],chloroplast [GO:0009507],chloroplast [GO:0009507]; (4S)-limonene synthase activity [GO:0050552]; (E)-beta-ocimene synthase activity [GO:0034768]; (R)-limonene synthase activity [GO:0034002]; magnesium ion binding [GO:0000287]; myrcene synthase activity [GO:0050551]; pinene synthase activity [GO:0050550]; sabinene synthase activity [GO:0080015]; sesquiterpene synthase activity [GO:0010334]; monoterpene biosynthetic process [GO:0043693]; terpenoid biosynthetic process [GO:0016114],integral component of membrane [GO:0016021]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; metabolic process [GO:0008152],magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Predominantly expressed in flowers but also in leaves, siliques and in stems. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:16297850}.,TISSUE SPECIFICITY: Predominantly expressed in flowers but also in leaves, roots, stems and siliques. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:16297850}.,TISSUE SPECIFICITY: Predominantly expressed in roots and at much lower levels in siliques. Not found in leaves, flowers or stems. Also detected in flowers in cv. Landsberg erecta. Not expressed in root apical meristem and elongation zone. Found in the vascular system of young roots and additionally in the cortex and epidermal cell layer of older roots. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:15299125}.,TISSUE SPECIFICITY: Expressed exclusively in flowers. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Expressed exclusively in mature flowers, but not in inmmature buds. {ECO:0000269|PubMed:12566586}. locus:2047510;,locus:2129101;,locus:2086004; AT2G24210,AT4G16740,AT3G25820,AT3G25830,AT4G16730,AT3G25810 synthase NA NA NA NA NA NA NA ENOG411DPSD PMDH2,PMDH1,F5K20_210 Q9ZP05,Q9SN86,O82399,Q9M335,A0A1P8BBQ0,A8MRP1,B3H560,F4KDZ4 MDHX2_ARATH,MDHP_ARATH,MDHX1_ARATH,Q9M335_ARATH,A0A1P8BBQ0_ARATH,A8MRP1_ARATH,B3H560_ARATH,F4KDZ4_ARATH Malate dehydrogenase 2, peroxisomal (EC 1.1.1.37) (Microbody NAD-dependent malate dehydrogenase) (mbNAD-MDH) (Peroxisomal NAD-dependent malate dehydrogenase 2) (pxNAD-MDH2) (Peroxisomal malate dehydrogenase 2) (Peroxisomal MDH2),Malate dehydrogenase, chloroplastic (EC 1.1.1.37) (Chloroplastic malate dehydrogenase) (Chloroplastic MDH) (cpNAD-MDH) (Plastidic NAD-dependent malate dehydrogenase) (pNAD-MDH),Malate dehydrogenase 1, peroxisomal (EC 1.1.1.37) (Peroxisomal NAD-dependent malate dehydrogenase 1) (pxNAD-MDH1) (Peroxisomal malate dehydrogenase 1) (Peroxisomal MDH1),Malate dehydrogenase-like protein (Uncharacterized protein F5K20_210),Peroxisomal NAD-malate dehydrogenase 2,Malate dehydrogenase (EC 1.1.1.37) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants pmdh1 and pmdh2 show seedling growth arrest 5 days after seed imbibition. {ECO:0000269|PubMed:17376163}.,DISRUPTION PHENOTYPE: Embryonic lethality when homozygous due to embryo development arrest at globular stage. {ECO:0000269|PubMed:24198233, ECO:0000269|PubMed:24453164}. Some reduction in growth rate in the dark resulting in shorter hypocotyls in the pmdh1pmdh2 double mutant. The double mutant germinated but seedling growth was arrested unless exogenous sucrose was provided however even then the double mutant remained appreciably smaller than the wild type,some reduction in growth rate in the dark resulting in shorter hypocotyls in pmdh1 1% sucrose rescued the mutant phenotype Short hypocotyl without exogenous sucrose-S. Smith-2007,Short hypocotyl in the dark-S. Smith-2007 FUNCTION: Catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments (Probable). Peroxisomal NAD-dependent malate dehydrogenase involved in fatty acid beta-oxidation. Reoxidizes NADH from the beta-oxidation and provides NAD for the conversion of fatty acyl-CoA to acetyl-CoA. Does not participate directly in the glyoxylate cycle (PubMed:17376163, PubMed:19812894). Required for maintenance of photosynthetic rates under photorespiratory conditions, and carbon flow during photorespiration. Supplies NADH reductant to the peroxisomal hydroxypyruvate reductase (HPR), which reduces hydroxypyruvate into glycerate in the photorespiratory cycle (PubMed:18685043). {ECO:0000269|PubMed:17376163, ECO:0000269|PubMed:18685043, ECO:0000269|PubMed:19812894, ECO:0000305|PubMed:20876337}.,FUNCTION: Catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments (Probable). Plays a key role in the metabolism of dark chloroplasts and non-green plastids. Essential for embryo viability (PubMed:24198233, PubMed:24453164). Plays an essential role in heterotrophic metabolism in embryos, and autotrophic metabolism in photosynthetic tissues as well (PubMed:24453164). {ECO:0000269|PubMed:24198233, ECO:0000269|PubMed:24453164, ECO:0000305|PubMed:20876337}. MetaCyc:AT5G09660-MONOMER;,ARA:AT3G47520-MONOMER;MetaCyc:AT3G47520-MONOMER;,ARA:AT2G22780-MONOMER;MetaCyc:AT2G22780-MONOMER; R-ATH-70263;R-ATH-71403; 1.1.1.37 37369,42406,37466,12318,37270,36345,38739,34976 Malate dehydrogenase 2, peroxisomal (EC 1.1.1.37) (Microbody NAD-dependent malate dehydrogenase) (mbNAD-MDH) (Peroxisomal NAD-dependent malate dehydrogenase 2) (pxNAD-MDH2) (Peroxisomal malate dehydrogenase 2) (Peroxisomal MDH2),Malate dehydrogenase, chloroplastic (EC 1.1.1.37) (Chloroplastic malate dehydrogenase) (Chloroplastic MDH) (cpNAD-MDH) (Plastidic NAD-dependent malate dehydrogenase) (pNAD-MDH),Malate dehydrogenase 1, peroxisomal (EC 1.1.1.37) (Peroxisomal NAD-dependent malate dehydrogenase 1) (pxNAD-MDH1) (Peroxisomal malate dehydrogenase 1) (Peroxisomal MDH1),Malate dehydrogenase-like protein (Uncharacterized protein F5K20_210),Peroxisomal NAD-malate dehydrogenase 2,Malate dehydrogenase (EC 1.1.1.37) peroxisome [GO:0005777]; L-malate dehydrogenase activity [GO:0030060]; glyoxylate cycle [GO:0006097]; malate metabolic process [GO:0006108]; regulation of fatty acid beta-oxidation [GO:0031998]; regulation of photorespiration [GO:0080093]; tricarboxylic acid cycle [GO:0006099],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; plastid stroma [GO:0009532]; stromule [GO:0010319]; vacuolar membrane [GO:0005774]; L-malate dehydrogenase activity [GO:0030060]; NAD(P)+ transhydrogenase activity [GO:0008746]; carbohydrate metabolic process [GO:0005975]; embryo development ending in seed dormancy [GO:0009793]; malate metabolic process [GO:0006108]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; tricarboxylic acid cycle [GO:0006099],chloroplast [GO:0009507]; peroxisome [GO:0005777]; L-malate dehydrogenase activity [GO:0030060]; glyoxylate cycle [GO:0006097]; malate metabolic process [GO:0006108]; regulation of fatty acid beta-oxidation [GO:0031998]; regulation of photorespiration [GO:0080093]; tricarboxylic acid cycle [GO:0006099],L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; tricarboxylic acid cycle [GO:0006099],L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; tricarboxylic acid cycle [GO:0006099],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; microbody [GO:0042579]; peroxisome [GO:0005777]; vacuole [GO:0005773]; L-malate dehydrogenase activity [GO:0030060]; malate dehydrogenase activity [GO:0016615]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; regulation of fatty acid beta-oxidation [GO:0031998]; regulation of photorespiration [GO:0080093]; response to cytokinin [GO:0009735]; tricarboxylic acid cycle [GO:0006099] DEVELOPMENTAL STAGE: During pollen development, expressed in mature pollen grains and early in pollen-tube growth. Not expressed in immature pollen grains and fully grown pollen tubes (PubMed:24198233). During embryo development, expressed from the heart stage to mature embryo. Not expressed at the beginning of embryo development up to the globular stage (PubMed:24198233, PubMed:24453164). {ECO:0000269|PubMed:24198233, ECO:0000269|PubMed:24453164}. TISSUE SPECIFICITY: Expressed in rosette leaves. {ECO:0000269|PubMed:20876337}.,TISSUE SPECIFICITY: Expressed in rosette leaves (PubMed:20876337). Expressed in meristematic regions of roots and shoots, cotyledons, young leaves, trichomes, stamen, pollen, tapetum, gynoecium and ovules (PubMed:24198233). {ECO:0000269|PubMed:20876337, ECO:0000269|PubMed:24198233}.,TISSUE SPECIFICITY: Expressed in rosette leaves at low levels. {ECO:0000269|PubMed:20876337}. locus:2079177;,locus:2062240;,locus:2084400;,locus:2144781; AT5G09660,AT3G47520,AT2G22780,AT3G53910 Malate dehydrogenase Malate dehydrogenase, glyoxysomal (EC 1.1.1.37),Malate dehydrogenase (EC 1.1.1.37),Os07g0630800 protein (Putative malate dehydrogenase) (cDNA clone:001-030-A01, full insert sequence) (cDNA clone:001-207-A10, full insert sequence),Malate dehydrogenase (EC 1.1.1.37) (Fragment) Q42972,Q5QLS8,Q7XZW5,Q8H4E0,Q0J5H3 MDHG_ORYSJ,Q5QLS8_ORYSJ,Q7XZW5_ORYSJ,Q8H4E0_ORYSJ,Q0J5H3_ORYSJ Os12g0632700 LOC_Os12g43630 OsJ_36976,Os01g0829800 B1088C09.38 OsJ_03950 OSNPB_010829800 P0446G04.11,Os03g0773800 LOC_Os03g56280 Os03g0773800 OsJ_12762 OSJNBb0094O03.16 OSNPB_030773800,P0011H09.138 Os07g0630800 OSNPB_070630800,Os08g0434300 Os08g0434300 OSNPB_080434300 ENOG411DPSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphate-induced protein 1 conserved region domain containing protein expressed Os06g0219900 protein (Putative phi-1) (cDNA clone:001-019-C08, full insert sequence),Os08g0485000 protein Q67X78,A0A0P0XHB9 Q67X78_ORYSJ,A0A0P0XHB9_ORYSJ Os06g0219900 OSNPB_060219900 P0436F11.30,Os08g0485000 OSNPB_080485000 ENOG411DPSI UTR3,UTR1 Q9M9S6,O64503 UTR3_ARATH,UTR1_ARATH UDP-galactose/UDP-glucose transporter 3 (AtUTr3),UDP-galactose/UDP-glucose transporter 1 (At-UDP-Glc/GalT) (AtUTr1) DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:19906043}. ER-derived vesicles obtained from atutr1 plants had a decreased uptake of UDP-glucose compared to the wild type. BiP and Calnexin are overexpressed in the mutant suggesting that atutr1 plants have the unfolded protein response constitutively activated. Constitutively activated unfolded protein response-A. Orellana-2006 FUNCTION: Essential sugar transporter required for the transport of UDP-glucose from the cytoplasm into the Golgi and the endoplasmic reticulum. Essential for pollen development and involved in embryo sac progress. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:19906043}.,FUNCTION: Essential sugar transporter required for the transport of UDP-galactose and UDP-glucose from the cytoplasm into the Golgi and the endoplasmic reticulum, to ensure quality control of protein folding. Essential for pollen development and involved in embryo sac progress. {ECO:0000269|PubMed:12042319, ECO:0000269|PubMed:16467298, ECO:0000269|PubMed:19906043}. MISCELLANEOUS: Suppressor of the Yeast snf4 mutation that is impaired in sugar trophism. 36717,36960 UDP-galactose/UDP-glucose transporter 3 (AtUTr3),UDP-galactose/UDP-glucose transporter 1 (At-UDP-Glc/GalT) (AtUTr1) integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of Golgi membrane [GO:0030173]; antiporter activity [GO:0015297]; UDP-galactose transmembrane transporter activity [GO:0005459]; UDP-glucose transmembrane transporter activity [GO:0005460]; embryo sac development [GO:0009553]; endoplasmic reticulum unfolded protein response [GO:0030968]; pollen development [GO:0009555]; UDP-galactose transmembrane transport [GO:0072334],endoplasmic reticulum membrane [GO:0005789]; integral component of endoplasmic reticulum membrane [GO:0030176]; antiporter activity [GO:0015297]; UDP-galactose transmembrane transporter activity [GO:0005459]; UDP-glucose transmembrane transporter activity [GO:0005460]; embryo sac development [GO:0009553]; endoplasmic reticulum unfolded protein response [GO:0030968]; nucleotide-sugar transport [GO:0015780]; pollen development [GO:0009555] TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in roots, stems and leaves. {ECO:0000269|PubMed:19906043}. locus:2012482;,locus:2058837; AT1G14360,AT2G02810 udp-galactose transporter Os06g0593100 protein (Putative UDP-galactose/UDP-glucose transporter) Q69XD4 Q69XD4_ORYSJ Os06g0593100 OSNPB_060593100 P0502H06.31 ENOG411DPSH ABA-hypersensitive DCAF 1 Q8L862,A0A1P8B5Q4,A0A1P8B736,F4JTP6 Q8L862_ARATH,A0A1P8B5Q4_ARATH,A0A1P8B736_ARATH,F4JTP6_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At4g35140),Transducin/WD40 repeat-like superfamily protein R-ATH-8951664; 55492,48887,60269,52612 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At4g35140),Transducin/WD40 repeat-like superfamily protein nucleus [GO:0005634] locus:2132796;,locus:2121164; AT4G35140,AT4G38480 DDB1- and CUL4-associated factor Os10g0544500 protein (Transducin family protein, putative, expressed) (cDNA clone:J033078O14, full insert sequence),Os03g0286800 protein (WD domain containing protein, putative, expressed) (cDNA clone:J023012L17, full insert sequence),Os10g0544500 protein (Fragment) Q7G1Q5,Q10N12,A0A0N7KS57 Q7G1Q5_ORYSJ,Q10N12_ORYSJ,A0A0N7KS57_ORYSJ LOC_Os10g39760 Os10g0544500 OSNPB_100544500,Os03g0286800 LOC_Os03g17780 Os03g0286800 OSNPB_030286800,Os10g0544500 OSNPB_100544500 ENOG411DPSK LECRK42,LECRK21,LECRK22,LECRK43,LECRK41,LECRK44,LecRK-II.2 Q9M345,Q9FIF1,Q9FIF0,O81292,O80939,O81291,A0A1P8BBV6,A0A1P8BBW2 LRK42_ARATH,LRK21_ARATH,LRK22_ARATH,LRK43_ARATH,LRK41_ARATH,LRK44_ARATH,A0A1P8BBV6_ARATH,A0A1P8BBW2_ARATH L-type lectin-domain containing receptor kinase IV.2 (Arabidopsis thaliana lectin-receptor kinase a4) (AthlecRK-a4) (LecRK-IV.2) (EC 2.7.11.1) (Protein SMALL, GLUED-TOGETHER, AND COLLAPSED POLLEN),Probable L-type lectin-domain containing receptor kinase II.1 (LecRK-II.1) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase II.2 (LecRK-II.2) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase IV.3 (LecRK-IV.3) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase IV.1 (Arabidopsis thaliana lectin-receptor kinase e) (AthlecRK-e) (LecRK-IV.1) (EC 2.7.11.1) (Lectin Receptor Kinase 1),L-type lectin-domain containing receptor kinase IV.4 (LecRK-IV.4) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein DISRUPTION PHENOTYPE: Male sterility due to defects in pollen development leading to deformed and collapsed nonviable pollen grains (PubMed:18392777). Increased susceptibility to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms (PubMed:25083911). {ECO:0000269|PubMed:18392777, ECO:0000269|PubMed:25083911}.,DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici and to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms and higher bacterial proliferation. {ECO:0000269|PubMed:25083911}. FUNCTION: Required during pollen development. {ECO:0000269|PubMed:18392777}.; FUNCTION: Involved in resistance response to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}.,FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}. 2.7.11.1 75978,74484,77085,75923,75541,75399,74838,76498 L-type lectin-domain containing receptor kinase IV.2 (Arabidopsis thaliana lectin-receptor kinase a4) (AthlecRK-a4) (LecRK-IV.2) (EC 2.7.11.1) (Protein SMALL, GLUED-TOGETHER, AND COLLAPSED POLLEN),Probable L-type lectin-domain containing receptor kinase II.1 (LecRK-II.1) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase II.2 (LecRK-II.2) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase IV.3 (LecRK-IV.3) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase IV.1 (Arabidopsis thaliana lectin-receptor kinase e) (AthlecRK-e) (LecRK-IV.1) (EC 2.7.11.1) (Lectin Receptor Kinase 1),L-type lectin-domain containing receptor kinase IV.4 (LecRK-IV.4) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; pollen development [GO:0009555],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; response to salicylic acid [GO:0009751],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] DEVELOPMENTAL STAGE: Low expression in young flowers (roughly before anther stage 6). Maximum levels around stages 6?7 that fade out gradually to a very low level in young siliques. Never detected in microspores or pollen. {ECO:0000269|PubMed:18392777}. locus:2084375;,locus:2168509;,locus:2133229;,locus:2040681;,locus:2133239; AT3G53810,AT5G59260,AT5G59270,AT4G02410,AT2G37710,AT4G02420 receptor kinase Os07g0132500 protein (Fragment),Os07g0131500 protein (Putative receptor-type protein kinase LRK1),Os07g0133100 protein (Putative receptor kinase) (cDNA, clone: J100072N22, full insert sequence),Os01g0587900 protein,Os03g0258000 protein,Os09g0268000 protein (Putative receptor like protein kinase),Os07g0262800 protein (Fragment),Os04g0531500 protein,Os04g0531400 protein,Os07g0575750 protein (Putative receptor-type protein kinase LRK1),Os07g0133000 protein (Putative receptor kinase),Os07g0129900 protein (Putative receptor kinase Lecrk) (Putative receptor-like protein kinase),Os07g0130800 protein (Fragment),Os02g0202950 protein (Fragment),Os07g0131375 protein (Fragment),Os03g0772600 protein (Fragment),Os03g0772700 protein,Os07g0130400 protein (Fragment),Os07g0129800 protein Q0D8S4,Q8H4I6,Q6ZLL7,Q5ZBP8,Q0DTB8,Q6H4T8,Q0D7D2,Q0JBH6,Q0JBH7,Q8LIP0,Q6ZLL9,Q84ZI6,A0A0P0X232,A0A0P0VG87,A0A0P0X2C3,A0A0P0W3M6,A0A0P0W456,A0A0P0X248,A0A0P0X2L9 Q0D8S4_ORYSJ,Q8H4I6_ORYSJ,Q6ZLL7_ORYSJ,Q5ZBP8_ORYSJ,Q0DTB8_ORYSJ,Q6H4T8_ORYSJ,Q0D7D2_ORYSJ,Q0JBH6_ORYSJ,Q0JBH7_ORYSJ,Q8LIP0_ORYSJ,Q6ZLL9_ORYSJ,Q84ZI6_ORYSJ,A0A0P0X232_ORYSJ,A0A0P0VG87_ORYSJ,A0A0P0X2C3_ORYSJ,A0A0P0W3M6_ORYSJ,A0A0P0W456_ORYSJ,A0A0P0X248_ORYSJ,A0A0P0X2L9_ORYSJ Os07g0132500 Os07g0132500 OSNPB_070132500,OJ1606_D04.110 Os07g0131500 OsJ_22981 OSJNBa0088O14.47 OSNPB_070131500,Os07g0133100 Os07g0133100 OJ1118_D07.13 OSNPB_070133100,P0700A11.17 Os01g0587900 OSNPB_010587900,Os03g0258000 Os03g0258000 OSNPB_030258000,Os09g0268000 B1008E06.18 OsJ_28605 OSNPB_090268000,Os07g0262800 Os07g0262800 OSNPB_070262800,Os04g0531500 Os04g0531500 OSNPB_040531500,Os04g0531400 Os04g0531400 OSNPB_040531400,OJ1562_B11.131 Os07g0575750 OSNPB_070575750,Os07g0133000 OJ1118_D07.9 OsJ_22989 OSNPB_070133000,P0483E09.4 Os07g0129900 OsJ_22964 OSJNBa0088O14.25 OSNPB_070129900,Os07g0130800 OSNPB_070130800,Os02g0202950 OSNPB_020202950,Os07g0131375 OSNPB_070131375,Os03g0772600 OSNPB_030772600,Os03g0772700 OSNPB_030772700,Os07g0130400 OSNPB_070130400,Os07g0129800 OSNPB_070129800 ENOG411DPSQ NAT8,NAT7 Q8VZQ5,Q0WPE9,A0A1P8AP19 NAT8_ARATH,NAT7_ARATH,A0A1P8AP19_ARATH Nucleobase-ascorbate transporter 8 (AtNAT8),Nucleobase-ascorbate transporter 7 (AtNAT7),Nucleobase-ascorbate transporter 8 R-ATH-196836; 59515,58508,43030 Nucleobase-ascorbate transporter 8 (AtNAT8),Nucleobase-ascorbate transporter 7 (AtNAT7),Nucleobase-ascorbate transporter 8 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Highly expressed in ovules, endosperm and embryo. {ECO:0000269|PubMed:16982705}.,TISSUE SPECIFICITY: Expressed exclusively in ovules. {ECO:0000269|PubMed:16982705}. locus:2194631;,locus:2202700; AT1G10540,AT1G60030 nucleobase-ascorbate transporter Os02g0741800 protein (Putative permease 1) (cDNA clone:J033042I18, full insert sequence),Os03g0823800 protein (Permease I, putative, expressed) (Putative permease),Os03g0823800 protein (Fragment) Q6Z7R7,Q852B5,A0A0N7KIB2 Q6Z7R7_ORYSJ,Q852B5_ORYSJ,A0A0N7KIB2_ORYSJ Os02g0741800 OsJ_08338 OSNPB_020741800 P0516G10.32 P0585G03.10,OSJNBb0081B07.9 LOC_Os03g60880 Os03g0823800 OSNPB_030823800,Os03g0823800 OSNPB_030823800 ENOG411DPSP PYRR,PHS1 Q9STY4,F4JBI5 RIBRX_ARATH,F4JBI5_ARATH Riboflavin biosynthesis protein PYRR, chloroplastic [Includes: Inactive diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase); Riboflavin biosynthesis intermediates N-glycosidase (EC 3.2.2.-)],Cytidine/deoxycytidylate deaminase family protein Dwarf; Bleached leaves; Phenotype enhanced under high light-L. Zhang-2010 FUNCTION: Pyrimidine reductase involved in the riboflavin biosynthesis pathway. Has also a non-functional N-terminal deaminase domain that lacks the catalytically essential zinc-binding residues. {ECO:0000269|PubMed:20580123, ECO:0000269|PubMed:23150645}.; FUNCTION: Catalyzes the hydrolysis of the N-glycosidic bond in the first two intermediates of riboflavin biosynthesis, which are highly reactive metabolites, yielding relatively innocuous products. Thus, can divert a surplus of harmful intermediates into relatively harmless products and pre-empt the damage these intermediates would otherwise do. Helps maintain flavin levels. Has no activity against GTP, nucleoside monophosphates or ADP-ribose. {ECO:0000269|PubMed:25431972}. MISCELLANEOUS: Unlike bacteria that have a bifunctional, two-domain RibD enzyme, plants have a monofunctional reductase and a monofunctional deaminase, each having an enzymatically inactive domain. PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 3/4. ARA:AT3G47390-MONOMER;,MetaCyc:MONOMER-17844; 1.1.1.193; 3.2.2.- 65502,65119 Riboflavin biosynthesis protein PYRR, chloroplastic [Includes: Inactive diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase); Riboflavin biosynthesis intermediates N-glycosidase (EC 3.2.2.-)],Cytidine/deoxycytidylate deaminase family protein chloroplast [GO:0009507]; 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [GO:0008703]; diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [GO:0008835]; hydrolase activity, hydrolyzing N-glycosyl compounds [GO:0016799]; NADP binding [GO:0050661]; carbohydrate derivative metabolic process [GO:1901135]; chloroplast organization [GO:0009658]; FAD metabolic process [GO:0046443]; response to high light intensity [GO:0009644]; riboflavin biosynthetic process [GO:0009231]; RNA modification [GO:0009451],5-amino-6-(5-phosphoribosylamino)uracil reductase activity [GO:0008703]; diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [GO:0008835]; NADP binding [GO:0050661]; riboflavin biosynthetic process [GO:0009231] locus:2099555; AT3G47390 riboflavin biosynthesis protein Os02g0473000 protein (Fragment) Q0E188,A0A0P0VIX4 Q0E188_ORYSJ,A0A0P0VIX4_ORYSJ Os02g0473000 Os02g0473000 OSNPB_020473000,Os02g0473000 OSNPB_020473000 ENOG411DPSS YIP4b,MSF3.22 Q93VH1,Q9SUL8,O64614 Q93VH1_ARATH,Q9SUL8_ARATH,O64614_ARATH Protein YIPF 30220,39216,30250 Protein YIPF cytosol [GO:0005829]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; polysaccharide transport [GO:0015774],integral component of membrane [GO:0016021],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; polysaccharide transport [GO:0015774] locus:2128926;,locus:2044455; AT4G30260,AT2G18840 Integral membrane Yip1 family protein Protein YIPF Q5N967,Q75HY0 Q5N967_ORYSJ,Q75HY0_ORYSJ Os01g0867700 OsJ_04207 OSNPB_010867700 P0677H08.7,Os05g0437500 OJ1058_F05.7 OSJNBb0042J17.1 OSNPB_050437500 ENOG411DPSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YABBY protein Protein YABBY 3 (OsYAB4) (OsYABBY3) Q8L556 YAB3_ORYSJ YAB3 Os10g0508300 LOC_Os10g36420 OSJNBb0015K05.5 OSJNBb0091N21.48 ENOG411DPSU UBP6,UBP7 Q949Y0,Q84WC6,A0A1I9LL79,B3H5V4 UBP6_ARATH,UBP7_ARATH,A0A1I9LL79_ARATH,B3H5V4_ARATH Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.4.19.12) (Deubiquitinating enzyme 6) (AtUBP6) (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing protease 6),Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.4.19.12) (Deubiquitinating enzyme 7) (AtUBP7) (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7),Ubiquitin carboxyl-terminal hydrolase (Fragment),Ubiquitin-specific protease 6 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.,FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT1G51710-MONOMER;,ARA:AT3G21280-MONOMER; R-ATH-5689880; 3.4.19.12 53696,53516,53488,49487 Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.4.19.12) (Deubiquitinating enzyme 6) (AtUBP6) (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing protease 6),Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.4.19.12) (Deubiquitinating enzyme 7) (AtUBP7) (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7),Ubiquitin carboxyl-terminal hydrolase (Fragment),Ubiquitin-specific protease 6 nucleus [GO:0005634]; plasmodesma [GO:0009506]; calmodulin binding [GO:0005516]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; calmodulin binding [GO:0005516]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2017552; AT1G51710,AT3G21280 ubiquitin carboxyl-terminal hydrolase Os01g0550100 protein (Putative ubiquitin-specific protease 6) (cDNA clone:J013056M18, full insert sequence) Q5JK78 Q5JK78_ORYSJ Os01g0550100 B1156H12.24 OSJNBa0024F24.9 OSNPB_010550100 ENOG411DPST STP6,STP8 Q9SFG0,Q9SBA7 STP6_ARATH,STP8_ARATH Sugar transport protein 6 (Hexose transporter 6),Sugar transport protein 8 (Hexose transporter 8) FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, mannose, fructose and galactose, and, to a lower extent, xylose and ribulose. {ECO:0000269|PubMed:12529516}.,FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}. 55907,56118 Sugar transport protein 6 (Hexose transporter 6),Sugar transport protein 8 (Hexose transporter 8) integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; monosaccharide transmembrane transporter activity [GO:0015145]; sugar:proton symporter activity [GO:0005351]; carbohydrate transmembrane transport [GO:0034219]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] DEVELOPMENTAL STAGE: First observed in pollen right before the opening of floral buds. Levels increase during pollen maturation. {ECO:0000269|PubMed:12529516}. TISSUE SPECIFICITY: Pollen specific. {ECO:0000269|PubMed:12529516}. locus:2083003;,locus:2179734; AT3G05960,AT5G26250 sugar transport protein Os07g0206600 protein (Putative hexose transporter) Q6ZIX3 Q6ZIX3_ORYSJ Os07g0206600 OJ1119_B04.18 OSNPB_070206600 ENOG411DPSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sucrose synthase Probable sucrose-phosphate synthase 2 (EC 2.4.1.14) (Sucrose phosphate synthase 2F) (OsSPS2F) (UDP-glucose-fructose-phosphate glucosyltransferase),Os02g0184400 protein,Os02g0184400 protein (Fragment) B7F7B9,A0A0P0VFT3,A0A0P0VFN7 SPSA2_ORYSJ,A0A0P0VFT3_ORYSJ,A0A0P0VFN7_ORYSJ SPS2 Os02g0184400 LOC_Os02g09170 OJ1572_F02.13 OsJ_05652,Os02g0184400 OSNPB_020184400 FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation (By similarity). {ECO:0000250}. ENOG411DPSV MYB67 Q9LTW2 Q9LTW2_ARATH AT3g12720/MBK21_8 (MYB-related transcription factor-like protein) (Myb domain protein 67) 34744 AT3g12720/MBK21_8 (MYB-related transcription factor-like protein) (Myb domain protein 67) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2087725; AT3G12720 Transcription factor Os07g0497500 protein (Putative myb-related protein) Q7F0R0 Q7F0R0_ORYSJ P0005E02.111 OJ1197_D06.104 Os07g0497500 OsJ_24340 OSNPB_070497500 ENOG411DPSY BT1 Q9SUV1 BRT1_ARATH Adenine nucleotide transporter BT1, chloroplastic/mitochondrial (Protein BRITTLE 1 homolog) (AtBT1) (Protein EMBRYO DEFECTIVE 104) (Protein EMBRYO DEFECTIVE 42) (Protein SODIUM HYPERSENSITIVE 1) DISRUPTION PHENOTYPE: Impaired growth, flower and silique development, and production of shrunk and sterile seeds. {ECO:0000269|PubMed:18564385}. Severely reduced germination in about 25% of seeds (presumptive homozygotes). Homozygotes when recovered are slow growing with abnormal flowers and siliques and are generally not fertile. Null: Embryo defective; Globular; Knockdown: Sensitive to low temperature, salt, sugar; Insensitive to ABA-X. Li-2007 FUNCTION: Probable mitochondrial adenylate carrier that catalyzes the transport of ATP, ADP and AMP, but not ADP-glucose. Recombinant BT1 shows a unidirectional mode of transport in intact E.coli cells. May function as a plastidial nucleotide uniport carrier required to export newly synthesized adenylates into the cytosol. May be involved in abiotic stress response. {ECO:0000269|PubMed:17701277, ECO:0000269|PubMed:18564385, ECO:0000269|PubMed:21883554}. MISCELLANEOUS: The growth retardation observed in plants silencing BT1 is circumvented by adenosine feeding. {ECO:0000305|PubMed:18564385}. 42571 Adenine nucleotide transporter BT1, chloroplastic/mitochondrial (Protein BRITTLE 1 homolog) (AtBT1) (Protein EMBRYO DEFECTIVE 104) (Protein EMBRYO DEFECTIVE 42) (Protein SODIUM HYPERSENSITIVE 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; mitochondrial transport [GO:0006839]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in root tips, the central cylinder of young roots, and maturating and germinating pollen. {ECO:0000269|PubMed:18564385}. locus:2127851; AT4G32400 protein brittle-1 chloroplastic Os05g0171300 protein (Putative adenylate translocator (Brittle-1) protein) (cDNA clone:J033130A21, full insert sequence) Q65XR7 Q65XR7_ORYSJ Os05g0171300 Os05g0171300 OSNPB_050171300 P0685E10.12 ENOG411DPSX C0SVJ2,A0A1P8B6F6 C0SVJ2_ARATH,A0A1P8B6F6_ARATH PHD finger protein-like protein (Uncharacterized protein At4g23860) (Fragment),PHD finger protein-like protein 50495,45329 PHD finger protein-like protein (Uncharacterized protein At4g23860) (Fragment),PHD finger protein-like protein cytoplasm [GO:0005737]; zinc ion binding [GO:0008270],zinc ion binding [GO:0008270] locus:2138151; E3 ubiquitin-protein ligase Os06g0529800 protein (Putative mlo2 protein) Q5Z6C2 Q5Z6C2_ORYSJ Os06g0529800 OsJ_21552 OSNPB_060529800 P0438E12.4 ENOG411DPSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitogen-activated protein kinase NA NA NA NA NA NA NA ENOG411DPS1 ELI5,TYRDC,AAS Q8RY79,Q9M0G4,A0A1P8B7T5,A0A1P8B7T7,A0A1P8B021,A0A1P8B7T4,A8MQJ1,F4JM08,F4JM09 TYDC1_ARATH,TYDC2_ARATH,A0A1P8B7T5_ARATH,A0A1P8B7T7_ARATH,A0A1P8B021_ARATH,A0A1P8B7T4_ARATH,A8MQJ1_ARATH,F4JM08_ARATH,F4JM09_ARATH Tyrosine decarboxylase 1 (EC 4.1.1.25),Probable tyrosine decarboxylase 2 (EC 4.1.1.25),L-tyrosine decarboxylase,Pyridoxal phosphate (PLP)-dependent transferases superfamily protein ARA:AT2G20340-MONOMER;,ARA:AT4G28680-MONOMER; R-ATH-209905;R-ATH-209931;R-ATH-70921; 4.1.1.25; 4.1.1.25 54423,60804,47167,41509,51224,63018,61031,59786,60989 Tyrosine decarboxylase 1 (EC 4.1.1.25),Probable tyrosine decarboxylase 2 (EC 4.1.1.25),L-tyrosine decarboxylase,Pyridoxal phosphate (PLP)-dependent transferases superfamily protein phenylacetaldehyde synthase activity [GO:1990055]; pyridoxal phosphate binding [GO:0030170]; tyrosine decarboxylase activity [GO:0004837]; L-phenylalanine catabolic process [GO:0006559]; response to wounding [GO:0009611],pyridoxal phosphate binding [GO:0030170]; tyrosine decarboxylase activity [GO:0004837]; cellular amino acid metabolic process [GO:0006520],carboxy-lyase activity [GO:0016831]; pyridoxal phosphate binding [GO:0030170]; cellular amino acid metabolic process [GO:0006520],carboxy-lyase activity [GO:0016831]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cellular amino acid metabolic process [GO:0006520],cytoplasm [GO:0005737]; aromatic-L-amino-acid decarboxylase activity [GO:0004058]; pyridoxal phosphate binding [GO:0030170]; tyrosine decarboxylase activity [GO:0004837]; cellular amino acid metabolic process [GO:0006520]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; tyramine biosynthetic process [GO:1901695] locus:2038937;,locus:2139855; AT2G20340,AT4G28680 decarboxylase Tyrosine decarboxylase 1 (EC 4.1.1.25),Os10g0400500 protein (Putative tyrosine/dopa decarboxylase),Os07g0437500 protein (Fragment) Q7XHL3,Q94I30,A0A0N7KNC7 TYDC1_ORYSJ,Q94I30_ORYSJ,A0A0N7KNC7_ORYSJ Os07g0437500 LOC_Os07g25590 OSJNBa0026I22.3 OSJNBb0095H08.30,OSJNBa0050N08.21 Os10g0400500 OSNPB_100400500,Os07g0437500 OSNPB_070437500 ENOG411DPS0 Q9SUQ3 Y4374_ARATH Probable inactive receptor kinase At4g23740 70798 Probable inactive receptor kinase At4g23740 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2128414; AT4G23740 inactive receptor kinase Os01g0223600 protein (Fragment) Q0JPG8 Q0JPG8_ORYSJ Os01g0223600 Os01g0223600 OSNPB_010223600 ENOG411DPS3 TFIIIA Q84MZ4,A0A1P8AV34,A0A1P8AV27 TF3A_ARATH,A0A1P8AV34_ARATH,A0A1P8AV27_ARATH Transcription factor IIIA (AtTFIIIA),Transcription factor IIIA DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:22353599}. FUNCTION: Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. MISCELLANEOUS: Binds in vitro potato spindle tuber viroid (PSTVd) RNA. {ECO:0000269|PubMed:21153748}. R-ATH-76061; 46653,36462,48356 Transcription factor IIIA (AtTFIIIA),Transcription factor IIIA nucleolus [GO:0005730]; nucleus [GO:0005634]; 5S rDNA binding [GO:0080084]; 5S rRNA binding [GO:0008097]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] DEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}. TISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}. locus:2030362; AT1G72050 transcription factor IIIA Os05g0121400 protein (Putative transcription factor IIIA),Os02g0116000 protein Q60F45,A0A0P0VDV4 Q60F45_ORYSJ,A0A0P0VDV4_ORYSJ OJ1001_G01.7 Os05g0121400 OSNPB_050121400,Os02g0116000 OSNPB_020116000 ENOG411DPS2 CDKD-3,CDKD-1 Q9LMT0,Q9C9U2 CDKD3_ARATH,CDKD1_ARATH Cyclin-dependent kinase D-3 (CDKD;3) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 2-At) (CAK2-At),Cyclin-dependent kinase D-1 (CDKD;1) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 3-At) (CAK3-At) FUNCTION: May form a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II. {ECO:0000269|PubMed:15486101, ECO:0000269|PubMed:16856985}. R-ATH-113418;R-ATH-5696395;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-69202;R-ATH-69273;R-ATH-69656;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 2.7.11.22; 2.7.11.23 44530,45138 Cyclin-dependent kinase D-3 (CDKD;3) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 2-At) (CAK2-At),Cyclin-dependent kinase D-1 (CDKD;1) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 3-At) (CAK3-At) cytoplasm [GO:0005737]; nucleus [GO:0005634]; TFIIK complex [GO:0070985]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein kinase activity [GO:0004672]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of cell cycle [GO:0051726],cytoplasm [GO:0005737]; nucleus [GO:0005634]; TFIIK complex [GO:0070985]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; cell differentiation [GO:0030154]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; protein phosphorylation [GO:0006468]; regulation of cell cycle [GO:0051726] TISSUE SPECIFICITY: Expressed in roots, shoots and suspension cell culture. {ECO:0000269|PubMed:12527363}.,TISSUE SPECIFICITY: Expressed at low levels in suspension cell culture, but not in plant organs. {ECO:0000269|PubMed:12527363}. locus:2194045;,locus:2027819; AT1G18040,AT1G73690 Cyclin-dependent kinase Cyclin-dependent kinase D-1 (CDKD;1) (EC 2.7.11.22) (EC 2.7.11.23) (CDC2+/CDC28-related protein kinase R2) (CDK-activating kinase R2) (CAK-R2),Os05g0392300 protein (cDNA clone:J013031C08, full insert sequence),Os05g0392300 protein (Fragment) P29620,B7F5K0,A0A0P0WLZ1 CDKD1_ORYSJ,B7F5K0_ORYSJ,A0A0P0WLZ1_ORYSJ CDKD-1 R2 Os05g0392300 LOC_Os05g32600 OJ1764_D01.12,Os05g0392300 OSNPB_050392300 FUNCTION: CDK-activating kinase that may control G1/S phase progression. May control the rate of cell differentiation to accomplish proper development of organs, or in response to a changing environment. Forms a complex with cyclin CYCH1-1 that phosphorylates CDKA-1 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II. {ECO:0000269|PubMed:10036778, ECO:0000269|PubMed:11029700, ECO:0000269|PubMed:11826308, ECO:0000269|PubMed:12799469}. ENOG411DPS4 ARP3 Q9SAF1 ARP3_ARATH Actin-related protein 3 (Protein DISTORTED TRICHOMES 1) DISRUPTION PHENOTYPE: Distorted trichomes and altered epidermal cell types. {ECO:0000269|PubMed:12837952, ECO:0000269|PubMed:12906796, ECO:0000269|PubMed:12913159}. FUNCTION: Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament (By similarity). Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. Involved in the control of cell morphogenesis in leaf epidermal pavement cells, root hairs, hypocotyls epidermal cells and trichomes, especially during rapid cell expansion. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles. {ECO:0000250, ECO:0000269|PubMed:12690443, ECO:0000269|PubMed:12837952, ECO:0000269|PubMed:12906796, ECO:0000269|PubMed:12913159}. R-ATH-2029482;R-ATH-5663213; 47660 Actin-related protein 3 (Protein DISTORTED TRICHOMES 1) Arp2/3 protein complex [GO:0005885]; cytosol [GO:0005829]; actin binding [GO:0003779]; ATP binding [GO:0005524]; actin filament organization [GO:0007015]; Arp2/3 complex-mediated actin nucleation [GO:0034314]; cell morphogenesis [GO:0000902]; multicellular organism development [GO:0007275]; multidimensional cell growth [GO:0009825]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed at low levels in roots, seedlings, leaves, stems, flowers, pollen, siliques and at a higher level in inflorescences. {ECO:0000269|PubMed:11891255, ECO:0000269|PubMed:12913159, ECO:0000269|PubMed:15086808}. locus:2031815; AT1G13180 Actin-related protein Actin-related protein 3 Q6K908 ARP3_ORYSJ ARP3 Os02g0596900 LOC_Os02g38340 OJ1568_B05.15 OsJ_007159 OsJ_07378 FUNCTION: Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles (By similarity). {ECO:0000250}. ENOG411DPS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os02g0231600 protein (cDNA clone:J033057F03, full insert sequence) Q0E2K6 Q0E2K6_ORYSJ Os02g0231600 Os02g0231600 OSNPB_020231600 ENOG411DPS8 XCP1,XCP2 O65493,Q9LM66,F4JN02 XCP1_ARATH,XCP2_ARATH,F4JN02_ARATH Cysteine protease XCP1 (EC 3.4.22.-) (Xylem cysteine peptidase 1) (AtXCP1),Cysteine protease XCP2 (EC 3.4.22.-) (Xylem cysteine peptidase 2) (AtXCP2),Xylem cysteine peptidase 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased resistance to infection by the bacterial wilt pathogen Ralstonia solanacearum. {ECO:0000269|PubMed:24947605}. FUNCTION: Cysteine protease involved in xylem tracheary element (TE) autolysis during xylogenesis in roots. Participates in micro autolysis within the intact central vacuole before mega autolysis is initiated by tonoplast implosion. {ECO:0000269|PubMed:18573193}.,FUNCTION: Cysteine protease involved in xylem tracheary element (TE) autolysis during xylogenesis in roots. Participates in micro autolysis within the intact central vacuole before mega autolysis is initiated by tonoplast implosion (PubMed:18573193). Involved in susceptibility to the bacterial plant pathogen Ralstonia solanacearum (PubMed:24947605). {ECO:0000269|PubMed:18573193, ECO:0000269|PubMed:24947605}. 3.4.22.- 39618,39708,32558 Cysteine protease XCP1 (EC 3.4.22.-) (Xylem cysteine peptidase 1) (AtXCP1),Cysteine protease XCP2 (EC 3.4.22.-) (Xylem cysteine peptidase 2) (AtXCP2),Xylem cysteine peptidase 1 extracellular space [GO:0005615]; lysosome [GO:0005764]; nucleus [GO:0005634]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; cysteine-type endopeptidase activity [GO:0004197]; programmed cell death involved in cell development [GO:0010623]; proteolysis involved in cellular protein catabolic process [GO:0051603],cell wall [GO:0005618]; extracellular space [GO:0005615]; lysosome [GO:0005764]; plasma membrane [GO:0005886]; cysteine-type endopeptidase activity [GO:0004197]; defense response to bacterium [GO:0042742]; programmed cell death involved in cell development [GO:0010623]; proteolysis involved in cellular protein catabolic process [GO:0051603],cysteine-type peptidase activity [GO:0008234] TISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers. Confined to tracheary elements, and specifically to xylem. {ECO:0000269|PubMed:10889267, ECO:0000269|PubMed:11788755}. locus:2122113;,locus:2030427; AT4G35350,AT1G20850 Xylem cysteine proteinase Os01g0971400 protein (Putative cysteine protease CP1) (cDNA clone:001-029-D05, full insert sequence) (cDNA clone:001-037-H03, full insert sequence) (cDNA clone:001-204-D02, full insert sequence) (cDNA clone:001-206-B02, full insert sequence),Cysteine protease CP1 (Cysteine proteinase CP1) (Os05g0108600 protein) Q94DH7,Q7XBA4 Q94DH7_ORYSJ,Q7XBA4_ORYSJ Os01g0971400 Os01g0971400 OsJ_04922 OSNPB_010971400 P0518C01.11,Os05g0108600 Os05g0108600 OSJNBa0068N01.15 OSNPB_050108600 ENOG411E1TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor protein kinase TMK1-like NA NA NA NA NA NA NA ENOG411E1TJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411DVKV SPDSYN1,SPDSYN2,SPDS1 Q9ZUB3,O48661,F4I7M5 SPD1_ARATH,SPD2_ARATH,F4I7M5_ARATH Spermidine synthase 1 (SPDSY 1) (EC 2.5.1.16) (Putrescine aminopropyltransferase 1),Spermidine synthase 2 (SPDSY 2) (EC 2.5.1.16) (Putrescine aminopropyltransferase 2),Spermidine synthase PATHWAY: Amine and polyamine biosynthesis; spermidine biosynthesis; spermidine from putrescine: step 1/1. R-ATH-351202; 2.5.1.16 36553,37140,36507 Spermidine synthase 1 (SPDSY 1) (EC 2.5.1.16) (Putrescine aminopropyltransferase 1),Spermidine synthase 2 (SPDSY 2) (EC 2.5.1.16) (Putrescine aminopropyltransferase 2),Spermidine synthase spermidine synthase activity [GO:0004766]; spermidine biosynthetic process [GO:0008295],plasma membrane [GO:0005886]; spermidine synthase activity [GO:0004766]; spermidine biosynthetic process [GO:0008295],transferase activity [GO:0016740]; polyamine biosynthetic process [GO:0006596] locus:2016129; AT1G23820,AT1G70310 spermidine synthase Spermidine synthase 1 (SPDSY 1) (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) Q9SMB1 SPD1_ORYSJ SPDSYN1 Os07g0408700 LOC_Os07g22600 OsJ_23928 P0492E07.108 ENOG411DVKX GPX6 O48646 GPX6_ARATH Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial (AtGPX1) (PHGPx) (EC 1.11.1.12) FUNCTION: Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione. {ECO:0000250|UniProtKB:O70325}. R-ATH-2142712; 1.11.1.12 25584 Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial (AtGPX1) (PHGPx) (EC 1.11.1.12) apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; glutathione peroxidase activity [GO:0004602]; phospholipid-hydroperoxide glutathione peroxidase activity [GO:0047066]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed at a low but detectable level in leaves, stems, and flowers, but at a higher level in siliques and even higher in roots. Predominantly expressed in seeds. {ECO:0000269|PubMed:14617062, ECO:0000269|Ref.1}. locus:2139712; AT4G11600 glutathione peroxidase Glutathione peroxidase,Glutathione peroxidase (Fragment) Q0JB49,Q6ESJ0,A0A0N7KJH5 Q0JB49_ORYSJ,Q6ESJ0_ORYSJ,A0A0N7KJH5_ORYSJ Os04g0556300 Os04g0556300 OsJ_15735 OSNPB_040556300,Os02g0664000 Os02g0664000 OsJ_07838 OSNPB_020664000 P0461B08.1,Os04g0556300 OSNPB_040556300 ENOG411E1TT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0193000 protein Q6Z1B9 Q6Z1B9_ORYSJ OSJNBa0056O06.25 Os08g0193000 OSNPB_080193000 ENOG411E8Z8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein (Os12g0152200 protein) (Os12g0153400 protein) Q2QXK7 Q2QXK7_ORYSJ Os12g0153400 LOC_Os12g05609 LOC_Os12g05709 Os12g0152200 OsJ_35243 OsJ_35253 OSNPB_120152200 OSNPB_120153400 ENOG411E8Z3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0527500 protein A0A0P0XI63 A0A0P0XI63_ORYSJ Os08g0527500 OSNPB_080527500 ENOG411E8ZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Hydroxy-O-Methy NA NA NA NA NA NA NA ENOG411E8ZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PUB domain NA NA NA NA NA NA NA ENOG411E8ZQ Q8LCC6,A0A1P8BAM2 Q8LCC6_ARATH,A0A1P8BAM2_ARATH Hyaluronan mediated motility receptor-like protein 12582,19690 Hyaluronan mediated motility receptor-like protein locus:505006583; AT5G06265 NA NA NA NA NA NA NA NA ENOG411E8ZS RALFL27 Q9LH43 RLF27_ARATH Protein RALF-like 27 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 12698 Protein RALF-like 27 apoplast [GO:0048046]; intracellular [GO:0005622]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] locus:2100582; AT3G29780 Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411E8ZR Q9LRJ8 Q9LRJ8_ARATH Proline-rich family protein 18141 Proline-rich family protein integral component of membrane [GO:0016021] locus:2095667; AT3G22070 NA NA NA NA NA NA NA NA ENOG411E8ZU AGL75,AGL81,AGL77,AGL98,AGL76,AGL105,AGL43,MUD12.50 Q9FLL0,Q9FIX0,Q9FKR2,Q9FIW6,Q9FL19,Q7XJA0,Q9FL10,F4KFY2,B3H4N9 AGL75_ARATH,AGL81_ARATH,Q9FKR2_ARATH,Q9FIW6_ARATH,Q9FL19_ARATH,Q7XJA0_ARATH,Q9FL10_ARATH,F4KFY2_ARATH,B3H4N9_ARATH Agamous-like MADS-box protein AGL75,Agamous-like MADS-box protein AGL81,AGAMOUS-like 77 (Uncharacterized protein At5g38740),AGAMOUS-like 98,AGAMOUS-like 76 (MADS-box protein AGL76),AGAMOUS-like 105 (MADS-box protein AGL105),AGAMOUS-like 43 (MADS-box protein AGL43),MADS-box family protein,AGAMOUS-like 105 Embryo defective; Gametophyte defective (inferred)-D. Meinke-2004 FUNCTION: Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. 37730,40178,48441,37289,44447,28126,37008,17877 Agamous-like MADS-box protein AGL75,Agamous-like MADS-box protein AGL81,AGAMOUS-like 77 (Uncharacterized protein At5g38740),AGAMOUS-like 98,AGAMOUS-like 76 (MADS-box protein AGL76),AGAMOUS-like 105 (MADS-box protein AGL105),AGAMOUS-like 43 (MADS-box protein AGL43),MADS-box family protein,AGAMOUS-like 105 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2163086;,locus:2167047;,locus:2166620;,locus:2167027;,locus:2173722;,locus:2173747;,locus:2174905;,locus:504954797; AT5G41200,AT5G39750,AT5G38740,AT5G39810,AT5G40120,AT5G37415,AT5G40220,AT5G40070 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E8ZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8ZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0151600 protein Q2QXM2 Q2QXM2_ORYSJ Os12g0151600 LOC_Os12g05560 OsJ_35240 OSNPB_120151600 ENOG411E8ZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8ZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0594800 protein) (Os12g0594950 protein) Q2QMR0 Q2QMR0_ORYSJ Os12g0594950 LOC_Os12g40330 Os12g0594800 OSNPB_120594950 ENOG411E8ZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0458800 protein (cDNA clone:002-135-A04, full insert sequence) Q0JCP3 Q0JCP3_ORYSJ Os04g0458800 Os04g0458800 OsJ_15043 OSNPB_040458800 ENOG411E8ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E8ZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0639100 protein A0A0N7KJS6 A0A0N7KJS6_ORYSJ Os04g0639100 OSNPB_040639100 ENOG411EGDE MFG13.7 Q9FGN5,F4J0L8 Q9FGN5_ARATH,F4J0L8_ARATH Transcription elongation factor (TFIIS) family protein 13709,17116 Transcription elongation factor (TFIIS) family protein nucleus [GO:0005634]; translation elongation factor activity [GO:0003746],translation elongation factor activity [GO:0003746] locus:2163675;,locus:504955893; AT5G51360,AT3G50373 Has 6 Blast hits to 6 proteins in 2 species Archae - 0 NA NA NA NA NA NA NA ENOG411DZND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HAT NA NA NA NA NA NA NA ENOG411EC5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EC5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EC5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Leucine Rich Repeat family protein, expressed (Os12g0220900 protein),Os12g0215950 protein (Fragment),Os12g0217400 protein,Os01g0162500 protein (Fragment),Os12g0212366 protein Q2QVR3,A0A0P0Y8C7,A0A0P0Y8B7,A0A0P0UYC8,A0A0P0Y814 Q2QVR3_ORYSJ,A0A0P0Y8C7_ORYSJ,A0A0P0Y8B7_ORYSJ,A0A0P0UYC8_ORYSJ,A0A0P0Y814_ORYSJ Os12g0220900 LOC_Os12g11930 OSNPB_120220900,Os12g0215950 OSNPB_120215950,Os12g0217400 OSNPB_120217400,Os01g0162500 OSNPB_010162500,Os12g0212366 OSNPB_120212366 ENOG411EC51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411ECSU PMD1 Q9LXR8 PMD1_ARATH Peroxisomal and mitochondrial division factor 1 DISRUPTION PHENOTYPE: Enlarged peroxisomes and elongated mitochondria. {ECO:0000269|PubMed:22147290}. FUNCTION: Involved in morphogenesis and proliferation of peroxisomes and mitochondria, independently from the previously defined pathway controlled by the FIS1-DRP3 complex. {ECO:0000269|PubMed:22147290}. 36595 Peroxisomal and mitochondrial division factor 1 integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; plastid [GO:0009536]; protein homodimerization activity [GO:0042803]; mitochondrion organization [GO:0007005]; peroxisome organization [GO:0007031] locus:2099114; AT3G58840 NA NA NA NA NA NA NA NA ENOG411EAQM Q9ZQ77 MO25L_ARATH MO25-like protein At2g03410 R-ATH-6798695; 40000 MO25-like protein At2g03410 locus:2063830; AT2G03410 Mo25-like NA NA NA NA NA NA NA ENOG411EAQN RLP50,RLP47,RLP48 Q8RXQ6,Q93YT3,F4JTT5,A0A1P8B683,F4JTU7,F4JTT4 Q8RXQ6_ARATH,Q93YT3_ARATH,F4JTT5_ARATH,A0A1P8B683_ARATH,F4JTU7_ARATH,F4JTT4_ARATH Disease resistance like protein (Leucine-rich repeat (LRR) family protein) (Putative disease resistance protein) (Uncharacterized protein At4g13820),Putative disease resistance Cf-2 (Putative disease resistance Cf-2 protein) (Receptor like protein 50),Receptor like protein 47,Receptor like protein 48 FUNCTION: Plays a role in root hair development. {ECO:0000269|PubMed:25781967}. 79876,98334,59311,69368,80973,79005 Disease resistance like protein (Leucine-rich repeat (LRR) family protein) (Putative disease resistance protein) (Uncharacterized protein At4g13820),Putative disease resistance Cf-2 (Putative disease resistance Cf-2 protein) (Receptor like protein 50),Receptor like protein 47,Receptor like protein 48 integral component of membrane [GO:0016021] locus:2119445;,locus:2129246;,locus:2119430;,locus:2119535; AT4G13820,AT4G13920,AT4G13810,AT4G13880 disease resistance family protein LRR family NA NA NA NA NA NA NA ENOG411EAQI O80532,O80531,F4HQ07,F4I0Z5,B3H5K4 O80532_ARATH,O80531_ARATH,F4HQ07_ARATH,F4I0Z5_ARATH,B3H5K4_ARATH At1g09490/F14J9_15 (F14J9.15 protein) (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamyl alcohol dehydrogenase),F14J9.14 protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT1G09490-MONOMER;,ARA:AT1G09480-MONOMER; 35622,35743,35195,41278,32397 At1g09490/F14J9_15 (F14J9.15 protein) (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamyl alcohol dehydrogenase),F14J9.14 protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein alcohol dehydrogenase (NAD) activity [GO:0004022]; coenzyme binding [GO:0050662],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2012265;,locus:2033394;,locus:2012250; AT1G09490,AT1G66800,AT1G09480 cinnamyl-alcohol dehydrogenase family NA NA NA NA NA NA NA ENOG411EAQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0532100 protein,Os09g0261700 protein,Os01g0528700 protein Q5JM36,A0A0P0XKE3,A0A0P0V3H5 Q5JM36_ORYSJ,A0A0P0XKE3_ORYSJ,A0A0P0V3H5_ORYSJ Os01g0532100 OSNPB_010532100 P0702H08.42,Os09g0261700 OSNPB_090261700,Os01g0528700 OSNPB_010528700 ENOG411E96Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain NA NA NA NA NA NA NA ENOG411EAQE DOF1.7,DOF3.1 O82155,Q94AR6 DOF17_ARATH,DOF31_ARATH Dof zinc finger protein DOF1.7 (AtDOF1.7),Dof zinc finger protein DOF3.1 (AtDOF3.1) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 21682,22530 Dof zinc finger protein DOF1.7 (AtDOF1.7),Dof zinc finger protein DOF3.1 (AtDOF3.1) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2017567;,locus:2094746; AT1G51700,AT3G21270 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EAQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dcp1-like decapping family NA NA NA NA NA NA NA ENOG411E96S LURP1 Q9SF24,Q9LZX1,F4IGE9 LOR10_ARATH,LOR15_ARATH,F4IGE9_ARATH Protein LURP-one-related 10,Protein LURP-one-related 15,LURP-one-like protein (DUF567) Compromised in RPP4-mediated resistance. Mutants allow increased growth of Hyaloperonospora parasitica hyphae frequently surrounded by a trail of necrotic plant cells. Susceptible to oomycete infection-T. Eulgem-2008 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}.,FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000269|PubMed:19010806}. 22013,24295,20017 Protein LURP-one-related 10,Protein LURP-one-related 15,LURP-one-like protein (DUF567) chloroplast [GO:0009507]; protein domain specific binding [GO:0019904] locus:2081481;,locus:2181082; AT3G11740,AT5G01750,AT2G14560 Pfam:DUF567 NA NA NA NA NA NA NA ENOG411EAQY WRKY38 Q8GWF1 WRK38_ARATH Probable WRKY transcription factor 38 (WRKY DNA-binding protein 38) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 33268 Probable WRKY transcription factor 38 (WRKY DNA-binding protein 38) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; salicylic acid mediated signaling pathway [GO:0009863]; transcription, DNA-templated [GO:0006351] locus:2171157; AT5G22570 WRKY NA NA NA NA NA NA NA ENOG411EAQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EAQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: phospholipase d transphosphatidylase NA NA NA NA NA NA NA ENOG411EAQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH OSJNBa0053K19.27 protein (OSJNBb0060E08.2 protein) (Os04g0625500 protein),Os04g0625400 protein Q7XPP6,A0A0P0WEY4 Q7XPP6_ORYSJ,A0A0P0WEY4_ORYSJ Os04g0625500 OsJ_16243 OSJNBa0053K19.27 OSJNBb0060E08.2 OSNPB_040625500,Os04g0625400 OSNPB_040625400 ENOG411EAQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDP-fucose protein O-fucosyltransferase NA NA NA NA NA NA NA ENOG411EAQ8 Q3E944,Q9FJC0,Q9SJ32,Q9LIR2,Q9FJC1,A0A1P8BDQ9,F4J5B7 FDL33_ARATH,FBD20_ARATH,FDL15_ARATH,FDL17_ARATH,FBD31_ARATH,A0A1P8BDQ9_ARATH,F4J5B7_ARATH Putative F-box/FBD/LRR-repeat protein At5g25850,Putative FBD-associated F-box protein At5g53640,Putative F-box/FBD/LRR-repeat protein At2g05300,Putative F-box/FBD/LRR-repeat protein At3g23955,Putative FBD-associated F-box protein At5g53635,LOW protein: F-box/FBD/LRR-like protein,F-box family protein 56119,53181,50383,46624,49269,20224,51565 Putative F-box/FBD/LRR-repeat protein At5g25850,Putative FBD-associated F-box protein At5g53640,Putative F-box/FBD/LRR-repeat protein At2g05300,Putative F-box/FBD/LRR-repeat protein At3g23955,Putative FBD-associated F-box protein At5g53635,LOW protein: F-box/FBD/LRR-like protein,F-box family protein integral component of membrane [GO:0016021] locus:2145279;,locus:6530298248;,locus:2828512; AT5G25850,AT5G53640,AT2G05300,AT3G23955,AT5G53635 Inherit from NOG: LRR-repeat protein NA NA NA NA NA NA NA ENOG411EAQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO domain NA NA NA NA NA NA NA ENOG411EAQ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger NA NA NA NA NA NA NA ENOG411EAQ1 ADR2,RLM1A Q9C7X0,F4I594,Q9FMB7,A0A1P8B8A2,Q9FXA6,Q9ZVX6,A0A1P8AXY0,A0A1P8AQI7,F4JVE9 ADR2_ARATH,RLM1A_ARATH,Q9FMB7_ARATH,A0A1P8B8A2_ARATH,Q9FXA6_ARATH,Q9ZVX6_ARATH,A0A1P8AXY0_ARATH,A0A1P8AQI7_ARATH,F4JVE9_ARATH Disease resistance protein ADR2 (Protein ACTIVATED DISEASE RESISTANCE 2) (Protein WHITE RUST RESISTANCE 4),Disease resistance protein RML1A (Protein RESISTANCE TO LEPTOSPHAERIA MACULANS 1A),Disease resistance protein (TIR-NBS-LRR class) (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein (TIR-NBS-LRR class), putative) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are susceptible to white rust fungal pathogen Albugo candida subsp. B (PubMed:18624640). Increased resistance on UV-induced growth inhibition (PubMed:25656510). {ECO:0000269|PubMed:18624640}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are susceptible to the pathogen Leptosphaeria maculans. {ECO:0000269|PubMed:16623885, ECO:0000269|PubMed:19220763}. Homozygotes are susceptible to infection by Acem2 Ac2 and Ac7 innoculations of A. candida white rust pathogens. Blisters and chlorotic patches form on leaves of susceptible plants.,Reduced resistance to Leptosphaeria maculans causal agent of blackleg disease. Susceptible to Albugo candida-E. Holub-2008,Susceptible to Leptosphaeria maculans-C. Dixelius-2006 FUNCTION: TIR-NB-LRR receptor-like protein that confers broad-spectrum resistance and full immunity to several races of the pathogen Albugo candida (white rust disease) (PubMed:18624640). Confers resistance to the biotrophic pathogens Pseudomonas syringae pv. tomato DC3000 and Hyaloperonospora arabidopsis isolate Noco2 (PubMed:19549129). May play a role in the response to UV stress (PubMed:25656510). {ECO:0000269|PubMed:18624640, ECO:0000269|PubMed:19549129, ECO:0000269|PubMed:25656510}.,FUNCTION: TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Leptosphaeria maculans (blackleg disease). {ECO:0000269|PubMed:16623885, ECO:0000269|PubMed:19220763}. MISCELLANEOUS: The gain-of-function mutants adr2 (T-DNA tagging) are dwarf, develop HR-like lesions on leaves, express constitutively defense and antioxidant-related genes, and have increased resistance to biotrophic pathogens. {ECO:0000269|PubMed:19549129}. 113978,113174,113052,120185,125009,125680,94668,106134,115188 Disease resistance protein ADR2 (Protein ACTIVATED DISEASE RESISTANCE 2) (Protein WHITE RUST RESISTANCE 4),Disease resistance protein RML1A (Protein RESISTANCE TO LEPTOSPHAERIA MACULANS 1A),Disease resistance protein (TIR-NBS-LRR class) (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein (TIR-NBS-LRR class), putative) cytoplasm [GO:0005737]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; cellular response to UV [GO:0034644]; defense response to fungus, incompatible interaction [GO:0009817]; defense response to oomycetes [GO:0002229]; signal transduction [GO:0007165],ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to fungus [GO:0050832]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531],integral component of membrane [GO:0016021]; ADP binding [GO:0043531] locus:2010738;,locus:2024588;,locus:2152252;,locus:2027528;,locus:2039405;,locus:2129670; AT1G56510,AT1G64070,AT5G38850,AT1G56540,AT2G16870,AT4G14370 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EAQ0 F4K7X7 F4K7X7_ARATH RING/FYVE/PHD zinc finger superfamily protein 23083 RING/FYVE/PHD zinc finger superfamily protein integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] AT5G01070 RINGv NA NA NA NA NA NA NA ENOG411EAQ3 PIRL7,PIRL6 Q5G5D8,O64566 PIRL7_ARATH,PIRL6_ARATH Plant intracellular Ras-group-related LRR protein 7,Plant intracellular Ras-group-related LRR protein 6 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. R-ATH-6798695; 41990,42811 Plant intracellular Ras-group-related LRR protein 7,Plant intracellular Ras-group-related LRR protein 6 TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:15809230}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:15809230}. locus:2123899;,locus:2047595; AT4G29880,AT2G19330 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EAQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EG9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA small_GTPase NA NA NA NA NA NA NA ENOG411EG9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9E Q9SUN7 Q9SUN7_ARATH At4g20420 (Putative tapetum-specific A3) (Tapetum specific protein TAP35/TAP44) (Tapetum-specific A3 like protein) 15140 At4g20420 (Putative tapetum-specific A3) (Tapetum specific protein TAP35/TAP44) (Tapetum-specific A3 like protein) locus:2128585; AT4G20420 Tapetum specific protein TAP35/TAP44 NA NA NA NA NA NA NA ENOG411EG9D A8MQ82,Q058H0,Q3EAQ3,A7REF1,A7REC9,A7RED0,A7RED1,Q1PEB1,A7REF3,Q3E8Q1,A8MS16,Q3E8I4,A8MQI1,Q3E8P8,F4K4J5,Q3E8P9,A8MQF4,Q3E8Q0,A8MRP6,B3H7M5,F4JWU9 A8MQ82_ARATH,Q058H0_ARATH,Q3EAQ3_ARATH,A7REF1_ARATH,A7REC9_ARATH,A7RED0_ARATH,A7RED1_ARATH,Q1PEB1_ARATH,A7REF3_ARATH,Q3E8Q1_ARATH,A8MS16_ARATH,Q3E8I4_ARATH,A8MQI1_ARATH,Q3E8P8_ARATH,F4K4J5_ARATH,Q3E8P9_ARATH,A8MQF4_ARATH,Q3E8Q0_ARATH,A8MRP6_ARATH,B3H7M5_ARATH,F4JWU9_ARATH Inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784),At4g07515 (ECA1 gametogenesis family protein (DUF784)),ECA1 gametogenesis family protein (DUF784),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784) 12830,11371,12637,12866,12801,12738,12812,12696,12794,12662,12763,13236,12923,12775,14228,12791,12818,12930,9030,12788 Inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784),At4g07515 (ECA1 gametogenesis family protein (DUF784)),ECA1 gametogenesis family protein (DUF784),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784) locus:4010713794;locus:4010713796;,locus:505006433;,locus:504955824;,locus:4010713525;,locus:4010713559;,locus:2206485;,locus:4010713558;,locus:504955522;,locus:4010713527;,locus:504956346;,locus:4010714034;,locus:504954957;,locus:4010713792;,locus:504956349;,locus:505006670;,locus:504956348;,locus:4010713526;,locus:504956347;,locus:4010713982;,locus:4010713984;,locus:505006659; AT3G30385AT3G30387;,AT4G07515,AT3G44115,AT1G45215,AT1G57777,AT1G57760,AT1G57775,AT4G08025,AT1G45223,AT5G34881,AT5G42567,AT5G42957,AT3G30383,AT5G34905,AT5G42955,AT5G34887,AT1G45221,AT5G34883,AT5G34882,AT5G34908,AT5G34885 Pfam:DUF784 NA NA NA NA NA NA NA ENOG411EG9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os03g0814800 protein A0A0P0W563 A0A0P0W563_ORYSJ Os03g0814800 OSNPB_030814800 ENOG411EG9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: NmrA-like family NA NA NA NA NA NA NA ENOG411EG9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EG9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GATA zinc finger Os11g0572901 protein A0A0P0Y3U1 A0A0P0Y3U1_ORYSJ Os11g0572901 OSNPB_110572901 ENOG411EG9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RRM NA NA NA NA NA NA NA ENOG411EG9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os07g0207900 protein,Os05g0570500 protein,Os07g0243301 protein Q84ZP2,A0A0P0WQI3,A0A0P0X414 Q84ZP2_ORYSJ,A0A0P0WQI3_ORYSJ,A0A0P0X414_ORYSJ OJ1559_F09.108 Os07g0207900 OSNPB_070207900,Os05g0570500 OSNPB_050570500,Os07g0243301 OSNPB_070243301 ENOG411EG9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitosis protein DIM1 NA NA NA NA NA NA NA ENOG411EG9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9V A0A1P8B0B8,F4II94,A0A1P8B0B0,A0A1P8B0A9 A0A1P8B0B8_ARATH,F4II94_ARATH,A0A1P8B0B0_ARATH,A0A1P8B0A9_ARATH OxaA/YidC-like membrane insertion protein 22768,21084,20336,16123 OxaA/YidC-like membrane insertion protein integral component of membrane [GO:0016021]; protein insertion into membrane [GO:0051205] locus:504956087; AT2G46455 NA NA NA NA NA NA NA NA ENOG411EG9U F5K20_280 Q9M329 Q9M329_ARATH At3g53980 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At3g53980) (Uncharacterized protein F5K20_280) 11723 At3g53980 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At3g53980) (Uncharacterized protein F5K20_280) locus:2084520; AT3G53980 Protease inhibitor/seed storage/LTP family Os05g0160300 protein (cDNA, clone: J100083F19, full insert sequence) Q6ATC1 Q6ATC1_ORYSJ Os05g0160300 Os05g0160300 OsJ_17210 OSJNBa0017J22.15 OSJNBa0034O12.7 OSNPB_050160300 ENOG411EG9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9R MSI17.5 Q9FKN0,B3H5W1 Q9FKN0_ARATH,B3H5W1_ARATH Uncharacterized protein 23922,19955 Uncharacterized protein locus:2173283; AT5G38320 NA NA NA NA NA NA NA NA ENOG411EG9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NRR repressor homolog 1,Os05g0368100 protein Q6L589,A0A0P0WLE1 NRH1_ORYSJ,A0A0P0WLE1_ORYSJ RH1 Os05g0368000 LOC_Os05g30500 OJ1393_A07.9,Os05g0368100 OSNPB_050368100 FUNCTION: Binds to and represses NPR1/NH1-mediated transcriptional activation of LG2 in vitro. {ECO:0000269|PubMed:22353606}. ENOG411EG9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early nodulin 75-like protein (Os07g0599600 protein) (cDNA clone:001-204-H12, full insert sequence) (cDNA clone:001-208-G11, full insert sequence) Q8H5A3 Q8H5A3_ORYSJ OJ1634_B10.113 Os07g0599600 OSNPB_070599600 ENOG411EG9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0671700 protein,Expressed protein (Os11g0671200 protein),Os11g0667900 protein Q2QZU0,Q2QZU3,A0A0P0Y5D4 Q2QZU0_ORYSJ,Q2QZU3_ORYSJ,A0A0P0Y5D4_ORYSJ Os11g0671700 LOC_Os11g44850 OsJ_34706 OSNPB_110671700,Os11g0671200 LOC_Os11g44820 OSNPB_110671200,Os11g0667900 OSNPB_110667900 ENOG411EG97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Os05g0512600 protein (cDNA clone:J033063E20, full insert sequence),Os06g0168901 protein Q6L527,Q5VRF0 Q6L527_ORYSJ,Q5VRF0_ORYSJ Os05g0512600 B1155G07.7 OJ1005_B11.18 OsJ_19176 OSNPB_050512600,OSJNBa0033B09.24 Os06g0168901 OSNPB_060168901 ENOG411EG96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function DUF223 NA NA NA NA NA NA NA ENOG411EG95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0844700 protein Q8S250 Q8S250_ORYSJ Os01g0844700 OsJ_04053 OSNPB_010844700 P0446B05.7 ENOG411EG94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2499) NA NA NA NA NA NA NA ENOG411EG93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411EG91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0200340 protein,Os01g0197150 protein A0A0P0WJ01,A0A0P0UZ93 A0A0P0WJ01_ORYSJ,A0A0P0UZ93_ORYSJ Os05g0200340 OSNPB_050200340,Os01g0197150 OSNPB_010197150 ENOG411EG90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E964 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EG99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PEP-utilising enzyme N-terminal NA NA NA NA NA NA NA ENOG411EG98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411ECSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Unc-45 homolog NA NA NA NA NA NA NA ENOG411DTTJ P43333 RU2A_ARATH U2 small nuclear ribonucleoprotein A' (U2 snRNP A') FUNCTION: This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA (By similarity). {ECO:0000250}. R-ATH-72163; 28041 U2 small nuclear ribonucleoprotein A' (U2 snRNP A') Cajal body [GO:0015030]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; response to cold [GO:0009409] locus:2024316; AT1G09760 U2 small nuclear ribonucleoprotein Os02g0234800 protein (Putative U2 snRNP protein A) (cDNA clone:J023062O22, full insert sequence) Q6EUK2 Q6EUK2_ORYSJ Os02g0234800 OJ1145_E05.10 OsJ_06008 OSNPB_020234800 ENOG411E5WZ BHLH131 P0CB25 BH131_ARATH Transcription factor bHLH131 (Basic helix-loop-helix protein 131) (AtbHLH131) (bHLH 131) (bHLH transcription factor bHLH131) 28297 Transcription factor bHLH131 (Basic helix-loop-helix protein 131) (AtbHLH131) (bHLH 131) (bHLH transcription factor bHLH131) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] AT4G38070 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E5WF Q8LED7 Q8LED7_ARATH At3g06070 (Uncharacterized protein At3g06070) 17450 At3g06070 (Uncharacterized protein At3g06070) locus:2080384; AT3G06070 NA Os05g0397300 protein (cDNA clone:001-105-B09, full insert sequence) (cDNA clone:J023066C05, full insert sequence),Os05g0397300 protein Q75HV7,A0A0P0WLZ5 Q75HV7_ORYSJ,A0A0P0WLZ5_ORYSJ Os05g0397300 Os05g0397300 OSJNBb0092G21.8 OSNPB_050397300,Os05g0397300 OSNPB_050397300 ENOG411E5WJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os05g0241300 protein C7J2M4 C7J2M4_ORYSJ Os05g0241300 Os05g0241300 OSNPB_050241300 ENOG411E5WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0516400 protein (Fragment) A0A0P0VJQ3 A0A0P0VJQ3_ORYSJ Os02g0516400 OSNPB_020516400 ENOG411E5W3 Q9XGZ3 Q9XGZ3_ARATH Early nodulin-like protein (Nodulin-like protein) (Putative nodulin protein) (T1N24.3 protein) 12269 Early nodulin-like protein (Nodulin-like protein) (Putative nodulin protein) (T1N24.3 protein) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] locus:2180632; AT5G25940 early nodulin Early nodulin (Os02g0227200 protein) (cDNA clone:J023028P16, full insert sequence) (cDNA clone:J023089C22, full insert sequence) O82157 O82157_ORYSJ OsENOD93b Os02g0227200 OsJ_05958 OSNPB_020227200 P0495C02.34 P0620H05.7 ENOG411E5W5 ARF42 O23659,Q9SY12 Y2372_ARATH,Y4287_ARATH B3 domain-containing protein At2g33720,B3 domain-containing protein At4g02870 (Protein AUXIN RESPONSE FACTOR 42) 37421,35367 B3 domain-containing protein At2g33720,B3 domain-containing protein At4g02870 (Protein AUXIN RESPONSE FACTOR 42) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; response to cadmium ion [GO:0046686]; transcription, DNA-templated [GO:0006351] locus:2057579;,locus:2140275; AT2G33720,AT4G02870 Transcription factor NA NA NA NA NA NA NA ENOG411E5W4 RPS28C,RPS28A; RPS28B P34789,Q9SR73 RS282_ARATH,RS281_ARATH 40S ribosomal protein S28-2,40S ribosomal protein S28-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 7341,7371 40S ribosomal protein S28-2,40S ribosomal protein S28-1 cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA [GO:0030490]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412],cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA [GO:0030490]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:2164386;,locus:2100118;locus:2150610; AT5G64140,AT3G10090AT5G03850; ribosomal protein Os10g0411700 protein (Fragment) A0A0P0XU17 A0A0P0XU17_ORYSJ Os10g0411700 OSNPB_100411700 ENOG411E5W8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0656900 protein Q0JKQ7 Q0JKQ7_ORYSJ Os01g0656900 Os01g0656900 OSNPB_010656900 ENOG411DWS3 LYK3 F4IB81 LYK3_ARATH LysM domain receptor-like kinase 3 (LysM-containing receptor-like kinase 3) (EC 2.7.11.-) FUNCTION: Putative Lysin motif (LysM) receptor kinase that may recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands. {ECO:0000250}. 2.7.11.- 71445 LysM domain receptor-like kinase 3 (LysM-containing receptor-like kinase 3) (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; abscisic acid-activated signaling pathway [GO:0009738]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; innate immune response [GO:0045087]; negative regulation of defense response [GO:0031348]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; protein phosphorylation [GO:0006468]; response to abscisic acid [GO:0009737] locus:2195814; AT1G51940 kinase family Os01g0741200 protein (Fragment) A0A0P0V818 A0A0P0V818_ORYSJ Os01g0741200 OSNPB_010741200 ENOG411E5G5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Methyltransferase NA NA NA NA NA NA NA ENOG411EGS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os06g0725600 protein A0A0P0X1C4 A0A0P0X1C4_ORYSJ Os06g0725600 OSNPB_060725600 ENOG411DQUH NAA15,EMB2753 Q8VZM1,F4HS68 NAA15_ARATH,F4HS68_ARATH N-terminal acetyltransferase A complex auxiliary subunit NAA15 (AtNAA15) (Protein OMISHA),Tetratricopeptide repeat (TPR)-containing protein DISRUPTION PHENOTYPE: Embryo lethal when homozygous. {ECO:0000269|PubMed:17915010, ECO:0000269|PubMed:25966763, ECO:0000269|PubMed:27385766}. Embryo defective; Gametophyte defective (inferred)-D. Meinke-2004 FUNCTION: Auxiliary subunit of the NatA N-alpha-acetyltransferase complex. Required for male gametocyte development, embryogenesis, suspensor development and the formation of the quiescent center (QC) in the root meristem (PubMed:27385766, PubMed:27610925). Involved in plant immunity through the regulation of SNC1 stability (PubMed:25966763). Required for embryo development (PubMed:15266054). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:25966763, ECO:0000269|PubMed:27385766, ECO:0000269|PubMed:27610925}. ARA:GQT-1880-MONOMER; 2.3.1.88; 102147,103942 N-terminal acetyltransferase A complex auxiliary subunit NAA15 (AtNAA15) (Protein OMISHA),Tetratricopeptide repeat (TPR)-containing protein cytosol [GO:0005829]; membrane [GO:0016020]; NatA complex [GO:0031415]; plasmodesma [GO:0009506]; embryo development ending in seed dormancy [GO:0009793]; N-terminal peptidyl-methionine acetylation [GO:0017196]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in leaves, roots, shoots and flowers. {ECO:0000269|PubMed:26184543}. locus:2198988; AT1G80410 N(alpha)-acetyltransferase 16 NatA auxiliary Acetyltransferase 1-like (Os01g0617500 protein),Os01g0617500 protein (Fragment) Q5ZDJ3,A0A0P0V5B0 Q5ZDJ3_ORYSJ,A0A0P0V5B0_ORYSJ P0686E09.27-1 Os01g0617500 OSNPB_010617500,Os01g0617500 OSNPB_010617500 ENOG411EHW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form (By similarity) NA NA NA NA NA NA NA ENOG411EHW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Os09g0559600 protein (cDNA clone:002-156-D08, full insert sequence) Q653R4 Q653R4_ORYSJ Os09g0559600 OJ1065_E04.18 OSNPB_090559600 ENOG411EHW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0171500 protein B9FVR1 B9FVR1_ORYSJ Os07g0171500 OsJ_23262 OSNPB_070171500 ENOG411EHW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHW1 Q9CAM2 Q9CAM2_ARATH Cystatin/monellin superfamily protein (Uncharacterized protein F16M19.11) 22397 Cystatin/monellin superfamily protein (Uncharacterized protein F16M19.11) locus:2824751; AT1G63205 NA NA NA NA NA NA NA NA ENOG411EHWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0226966 protein) Q2R8J5 Q2R8J5_ORYSJ Os11g0226966 LOC_Os11g11970 OsJ_33432 OSNPB_110226966 ENOG411EHWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EHWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0155550 protein (Fragment),Os03g0103033 protein (Fragment),Os05g0410601 protein (Fragment),Os06g0264432 protein (Fragment),Os01g0556650 protein (Fragment),Os06g0581151 protein (Fragment) A0A0P0XC17,A0A0P0VRV3,A0A0P0WMB2,A0A0P0WVG1,A0A0P0V406,A0A0N7KMB7 A0A0P0XC17_ORYSJ,A0A0P0VRV3_ORYSJ,A0A0P0WMB2_ORYSJ,A0A0P0WVG1_ORYSJ,A0A0P0V406_ORYSJ,A0A0N7KMB7_ORYSJ Os08g0155550 OSNPB_080155550,Os03g0103033 OSNPB_030103033,Os05g0410601 OSNPB_050410601,Os06g0264432 OSNPB_060264432,Os01g0556650 OSNPB_010556650,Os06g0581151 OSNPB_060581151 ENOG411ECMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC Os04g0170500 protein (Fragment),Os10g0327700 protein,Os10g0327600 protein Q0JF27,A0A0P0XSQ0,A0A0P0XTF4 Q0JF27_ORYSJ,A0A0P0XSQ0_ORYSJ,A0A0P0XTF4_ORYSJ Os04g0170500 Os04g0170500 OSNPB_040170500,Os10g0327700 OSNPB_100327700,Os10g0327600 OSNPB_100327600 ENOG411EAGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411E9H8 M4E13.160 O49617,Q9ZVX3,A8MRF0,A8MQE1,B3H7D4 O49617_ARATH,Q9ZVX3_ARATH,A8MRF0_ARATH,A8MQE1_ARATH,B3H7D4_ARATH AT4g35110/M4E13_160 (Phospholipase-like protein (PEARLI 4) family protein) (Uncharacterized protein At4g35110) (Uncharacterized protein M4E13.160),Expressed protein (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein 43256,42527,32817,44876,44651 AT4g35110/M4E13_160 (Phospholipase-like protein (PEARLI 4) family protein) (Uncharacterized protein At4g35110) (Uncharacterized protein M4E13.160),Expressed protein (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein chromatin binding [GO:0003682]; mitotic sister chromatid cohesion [GO:0007064]; regulation of gene expression [GO:0010468],plasma membrane [GO:0005886]; chromatin binding [GO:0003682]; mitotic sister chromatid cohesion [GO:0007064]; regulation of gene expression [GO:0010468],chromatin binding [GO:0003682]; mitotic sister chromatid cohesion [GO:0007064]; regulation of gene expression [GO:0010468]; response to karrikin [GO:0080167] locus:2039435;,locus:2131611; AT4G35110,AT2G16900 Arabidopsis phospholipase-like protein (PEARLI 4) NA NA NA NA NA NA NA ENOG411E9H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 NA NA NA NA NA NA NA ENOG411E9H6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP NA NA NA NA NA NA NA ENOG411E9H7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter NA NA NA NA NA NA NA ENOG411E9H4 GPAT7,GPAT5 Q9LHS7,Q9CAY3,A0A1I9LTN3,F4J690 GPAT7_ARATH,GPAT5_ARATH,A0A1I9LTN3_ARATH,F4J690_ARATH Glycerol-3-phosphate acyltransferase 7 (AtGPAT7) (EC 2.3.1.15),Glycerol-3-phosphate acyltransferase 5 (AtGPAT5) (EC 2.3.1.15),Phospholipid/glycerol acyltransferase family protein The mutant has a 50% reduction in aliphatic suberin in young roots and several fold reduction in aliphatic suberin monomers in seed coats. The seed coats are more fragile have a darker appearance and increased permeability to dyes. The mutant seeds have a reduced germination rate under high salt. The seedlings have lower tolerance to salt stress. Abnormal insoluble lipid polyester biosynthesis-J. Ohlrogge-2007 FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate, an essential step in glycerolipid biosynthesis. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 1/3. ARA:AT5G06090-MONOMER;,ARA:AT3G11430-MONOMER;MetaCyc:AT3G11430-MONOMER; 2.3.1.198; 2.3.1.15 56082,56081,44447,44059 Glycerol-3-phosphate acyltransferase 7 (AtGPAT7) (EC 2.3.1.15),Glycerol-3-phosphate acyltransferase 5 (AtGPAT5) (EC 2.3.1.15),Phospholipid/glycerol acyltransferase family protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; glycerol-3-phosphate O-acyltransferase activity [GO:0004366]; phosphatase activity [GO:0016791]; sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity [GO:0102420]; CDP-diacylglycerol biosynthetic process [GO:0016024]; cutin biosynthetic process [GO:0010143]; dephosphorylation [GO:0016311],integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; glycerol-3-phosphate O-acyltransferase activity [GO:0004366]; phosphatase activity [GO:0016791]; sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity [GO:0102420]; CDP-diacylglycerol biosynthetic process [GO:0016024]; cutin biosynthetic process [GO:0010143]; dephosphorylation [GO:0016311]; suberin biosynthetic process [GO:0010345],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746]; metabolic process [GO:0008152],integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; phosphatase activity [GO:0016791]; cutin biosynthetic process [GO:0010143]; dephosphorylation [GO:0016311] TISSUE SPECIFICITY: Weakly or not expressed in roots, leaves, seedlings, developing siliques and flower buds. {ECO:0000269|PubMed:12897259}. locus:2152825;,locus:2080687;,locus:504955895; AT5G06090,AT3G11430,AT3G11325 glycerol-3-phosphate acyltransferase 7 NA NA NA NA NA NA NA ENOG411E9H5 WNK2 Q8S8Y9,A0A1I9LMC8,A0A1I9LMD0,A0A1I9LMC7,A0A1I9LMC9 WNK2_ARATH,A0A1I9LMC8_ARATH,A0A1I9LMD0_ARATH,A0A1I9LMC7_ARATH,A0A1I9LMC9_ARATH Serine/threonine-protein kinase WNK2 (AtWNK2) (EC 2.7.11.1) (Protein kinase with no lysine 2),With no lysine (K) kinase 2 DISRUPTION PHENOTYPE: Plants display early flowering and altered expression of genes involved in the photoperiod flowering pathway, such as ELF4, TOC1, CO and FT. {ECO:0000269|PubMed:18761494}. FUNCTION: Regulates flowering time by modulating the photoperiod pathway. Possesses kinase activity in vitro. {ECO:0000269|PubMed:18761494}. 2.7.11.1 65327,68349,76647,73624,68955 Serine/threonine-protein kinase WNK2 (AtWNK2) (EC 2.7.11.1) (Protein kinase with no lysine 2),With no lysine (K) kinase 2 cytosol [GO:0005829]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; photoperiodism, flowering [GO:0048573]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2087857; AT3G22420 with no k 2 NA NA NA NA NA NA NA ENOG411E9H2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NBS-LRR-like protein (Os07g0116800 protein) Q8H5K6 Q8H5K6_ORYSJ OJ1119_A04.108 Os07g0116800 OsJ_22884 OSNPB_070116800 ENOG411E9H3 DOF4.1 Q9M161 DOF41_ARATH Dof zinc finger protein DOF4.1 (AtDOF4.1) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 33390 Dof zinc finger protein DOF4.1 (AtDOF4.1) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2134658; AT4G00940 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411E9H0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0720900 protein A0A0P0V7I4 A0A0P0V7I4_ORYSJ Os01g0720900 OSNPB_010720900 ENOG411E9H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os09g0119600 protein (UDP-glucose glucosyltransferase-like protein) (cDNA clone:001-021-B05, full insert sequence),Glucosyltransferase-2-like (Os02g0519500 protein) Q6K2W8,Q6H4L5 Q6K2W8_ORYSJ,Q6H4L5_ORYSJ Os09g0119600 Os09g0119600 OJ1512_E04.18 OsJ_28402 OSNPB_090119600,P0461D06.27 Os02g0519500 OSNPB_020519500 ENOG411E9HN ZHD14 Q9LQW3 ZHD14_ARATH Zinc-finger homeodomain protein 14 (AtZHD14) (Homeobox protein 32) (AtHB-32) FUNCTION: Putative transcription factor. 19923 Zinc-finger homeodomain protein 14 (AtZHD14) (Homeobox protein 32) (AtHB-32) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers and stems. {ECO:0000269|PubMed:16428600}. locus:505006123; AT1G14687 homeobox protein NA NA NA NA NA NA NA ENOG411E9HM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os05g0498500 protein (Fragment) Q0DH09 Q0DH09_ORYSJ Os05g0498500 Os05g0498500 OSNPB_050498500 ENOG411E9HJ EDA11 Q9C6G7,Q9C6G8,Q9ZVU2,Q4TU44,Q9ZWD7,Q1PFK2,Q9ZQX3,A0A1P8BC49,F4K1I0,F4ILF9,F4JHK3 Q9C6G7_ARATH,Q9C6G8_ARATH,Q9ZVU2_ARATH,Q4TU44_ARATH,Q9ZWD7_ARATH,Q1PFK2_ARATH,Q9ZQX3_ARATH,A0A1P8BC49_ARATH,F4K1I0_ARATH,F4ILF9_ARATH,F4JHK3_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T18I3.4),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T18I3.3),Cysteine/Histidine-rich C1 domain family protein (T5A14.16 protein),Cysteine/Histidine-rich C1 domain family protein (PHD family protein),Cysteine/Histidine-rich C1 domain family protein (F20N2.12) (Uncharacterized protein At1g55700),Cysteine/Histidine-rich C1 domain family protein (DC1 domain-containing protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g02540) (Uncharacterized protein T10P11.27),Cysteine/Histidine-rich C1 domain family protein 75501,78355,82502,75087,77831,73843,94854,68702,80036,81327,70009 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T18I3.4),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T18I3.3),Cysteine/Histidine-rich C1 domain family protein (T5A14.16 protein),Cysteine/Histidine-rich C1 domain family protein (PHD family protein),Cysteine/Histidine-rich C1 domain family protein (F20N2.12) (Uncharacterized protein At1g55700),Cysteine/Histidine-rich C1 domain family protein (DC1 domain-containing protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g02540) (Uncharacterized protein T10P11.27),Cysteine/Histidine-rich C1 domain family protein megagametogenesis [GO:0009561],metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676],integral component of membrane [GO:0016021],metal ion binding [GO:0046872] locus:2035641;,locus:2197213;,locus:2193884;,locus:2193864;,locus:2020482;,locus:2193854;,locus:2132338;,locus:2157582;,locus:2045369; AT1G55380,AT1G55390,AT1G55420,AT1G55430,AT1G55700,AT1G55440,AT4G02540,AT5G42280,AT2G23100 domain-containing protein NA NA NA NA NA NA NA ENOG411E9HK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF98) NA NA NA NA NA NA NA ENOG411E9HH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9HI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E9HF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411E9HG MAB16.14,EMB2743 Q9LRZ2,Q9LUT9,Q9LW55,Q9LIB4,Q84X17,Q3EBP1,Q8LCE9,Q9LUQ9,Q9LV45,P0DI01,Q9FHK1,Q84V15,Q9ZQM4,Q9LUN5,P0DI00,Q9FIH1,Q9LUT1,Q9LV29,Q9LUI4,Q9LVX8,Q9LTQ1,A0A1I9LSV6 FB147_ARATH,FB150_ARATH,FB180_ARATH,FBK57_ARATH,FB112_ARATH,FB124_ARATH,FB163_ARATH,FBK56_ARATH,FB184_ARATH,FB265_ARATH,FB263_ARATH,FB320_ARATH,FB101_ARATH,FB156_ARATH,FB264_ARATH,FB281_ARATH,FB151_ARATH,Q9LV29_ARATH,Q9LUI4_ARATH,Q9LVX8_ARATH,Q9LTQ1_ARATH,A0A1I9LSV6_ARATH Putative F-box protein At3g16820,F-box protein At3g17320,Putative F-box protein At3g23420,Putative F-box/kelch-repeat protein At3g16880,F-box protein At2g17830,Putative F-box protein At2g33655,F-box protein At3g19470,F-box/kelch-repeat protein At3g16740,Putative F-box protein At3g24580,F-box protein At5g36820,Putative F-box protein At5g36200,F-box protein At2g18780,Putative F-box protein At2g11200,Putative F-box protein At3g17620,F-box protein At5g36730,F-box protein At5g42460,Putative F-box protein At3g17400,F-box associated ubiquitination effector family protein (F-box family protein-related),F-box associated ubiquitination effector family protein,At5g36190 (F-box protein interaction domain protein) (Gb|AAD08947.1),F-box/associated interaction domain protein Embryo defective; Cotyledon-D. Meinke-2003 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 36590,47289,31556,42337,46014,17113,44040,45548,43803,47609,55213,42522,17671,46447,45311,21344,18426,37874,17632,11742,14584 Putative F-box protein At3g16820,F-box protein At3g17320,Putative F-box protein At3g23420,Putative F-box/kelch-repeat protein At3g16880,F-box protein At2g17830,Putative F-box protein At2g33655,F-box protein At3g19470,F-box/kelch-repeat protein At3g16740,Putative F-box protein At3g24580,F-box protein At5g36820,Putative F-box protein At5g36200,F-box protein At2g18780,Putative F-box protein At2g11200,Putative F-box protein At3g17620,F-box protein At5g36730,F-box protein At5g42460,Putative F-box protein At3g17400,F-box associated ubiquitination effector family protein (F-box family protein-related),F-box associated ubiquitination effector family protein,At5g36190 (F-box protein interaction domain protein) (Gb|AAD08947.1),F-box/associated interaction domain protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],plasmodesma [GO:0009506]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2086765;,locus:2088980;,locus:2093683;,locus:2827846;,locus:504956011;,locus:2090619;,locus:2089308;,locus:2091707;,locus:2832150;,locus:2158901;,locus:2054033;,locus:2055061;,locus:2090557;,locus:2147396;,locus:2162321;,locus:2088975;,locus:2092692;,locus:2094359;,locus:2158956;,locus:2092389; AT3G16820,AT3G17320,AT3G23420,AT3G16880,AT2G17830,AT2G33655,AT3G19470,AT3G16740,AT3G24580,AT5G36820,AT5G36200,AT2G18780,AT2G11200,AT3G17620,AT5G36730,AT5G42460,AT3G17400,AT3G18120,AT3G22770,AT5G36190,AT3G20400 F-box associated NA NA NA NA NA NA NA ENOG411E9HD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9HE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucose/GDP-mannose dehydrogenase family NAD binding domain NA NA NA NA NA NA NA ENOG411E9HB CYP81F1 O65790 C81F1_ARATH Cytochrome P450 81F1 (EC 1.14.-.-) FUNCTION: Involved in indole glucosinolate biosynthesis. Catalyzes hydroxylation reactions of the glucosinolate indole ring. Converts indol-3-yl-methylglucosinolate (I3M) to 4-hydroxy-indol-3-yl-methylglucosinolate (4OH-I3M) and/or 1-hydroxy-indol-3-yl-methylglucosinolate (1OH-I3M) intermediates. These hydroxy intermediates are converted to 4-methoxy-indol-3-yl-methylglucosinolate (4MO-I3M) and 1-methoxy-indol-3-yl-methylglucosinolate (1MO-I3M) by indole glucosinolate methyltransferase 1 and 2 (IGMT1 and IGMT2). {ECO:0000269|PubMed:21317374}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:AT4G37430-MONOMER; 1.14.-.- 57555 Cytochrome P450 81F1 (EC 1.14.-.-) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550] locus:2126402; AT4G37430 Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9HC RVE4,LCL1 Q6R0G4,A0A1P8BFY6,A0A1P8BFZ8 RVE4_ARATH,A0A1P8BFY6_ARATH,A0A1P8BFZ8_ARATH Protein REVEILLE 4 (Myb transcription factor LHY/CCA1-like 1),LHY/CCA1-like 1 FUNCTION: Probable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}. 32207,29121,31818 Protein REVEILLE 4 (Myb transcription factor LHY/CCA1-like 1),LHY/CCA1-like 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2151251; AT5G02840 LHY CCA1-like 1 NA NA NA NA NA NA NA ENOG411E9HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar sorting protein 9 (VPS9) domain NA NA NA NA NA NA NA ENOG411E9HX SKU5 similar 10,sks9 Q9SUD0,Q8VYB3,A0A1P8B710,A0A1P8B703 Q9SUD0_ARATH,Q8VYB3_ARATH,A0A1P8B710_ARATH,A0A1P8B703_ARATH Multi-copper oxidase type I family protein (Pectinesterase like protein) (SKU5 similar 10),Putative pectinesterase (SKU5 similar 9),SKU5 similar 9 ARA:AT4G28090-MONOMER;,ARA:AT4G38420-MONOMER; 62251,62491,56651,51332 Multi-copper oxidase type I family protein (Pectinesterase like protein) (SKU5 similar 10),Putative pectinesterase (SKU5 similar 9),SKU5 similar 9 plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722],copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491] locus:2132927;,locus:2121823; AT4G28090,AT4G38420 Multicopper oxidase NA NA NA NA NA NA NA ENOG411E9HY TUBB4,TUBB9 P24636,P29517 TBB4_ARATH,TBB9_ARATH Tubulin beta-4 chain (Beta-4-tubulin),Tubulin beta-9 chain (Beta-9-tubulin) FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. MISCELLANEOUS: There are nine genes coding for beta-tubulin. R-ATH-6798695; 49823,49658 Tubulin beta-4 chain (Beta-4-tubulin),Tubulin beta-9 chain (Beta-9-tubulin) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; tubulin complex [GO:0045298]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017],chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; tubulin complex [GO:0045298]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; mRNA binding [GO:0003729]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017]; response to cadmium ion [GO:0046686] locus:2158755;,locus:2133084; AT5G44340,AT4G20890 Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) NA NA NA NA NA NA NA ENOG411E9HV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9HW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9HT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium:sulfate symporter transmembrane region NA NA NA NA NA NA NA ENOG411E9HU CRK33 Q9LDN1 CRK33_ARATH Putative cysteine-rich receptor-like protein kinase 33 (Cysteine-rich RLK33) (EC 2.7.11.-) 2.7.11.- 71693 Putative cysteine-rich receptor-like protein kinase 33 (Cysteine-rich RLK33) (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468] locus:2123071; AT4G11490 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E9HR UGE1,UGE3 Q42605,Q8LDN8,A0A1P8APY6 UGE1_ARATH,UGE3_ARATH,A0A1P8APY6_ARATH Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 (EC 5.1.3.2) (EC 5.1.3.5) (UDP-D-xylose 4-epimerase) (UDP-L-arabinose 4-epimerase) (UDP-galactose 4-epimerase 1) (UDP-glucose 4-epimerase 1) (AtUGE1),Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3 (EC 5.1.3.2) (EC 5.1.3.5) (UDP-D-xylose 4-epimerase) (UDP-L-arabinose 4-epimerase) (UDP-galactose 4-epimerase 3) (UDP-glucose 4-epimerase 3) (AtUGE3),UDP-D-glucose/UDP-D-galactose 4-epimerase 3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17496119}.,DISRUPTION PHENOTYPE: No visible phenotype. Uge2 and uge3 double mutant is almost completely sterile (PubMed:17496119). {ECO:0000269|PubMed:17496119}. no obvious phenotype FUNCTION: Catalyzes the interconversion between UDP-glucose and UDP-galactose and the interconversion between UDP-arabinose and UDP-xylose. Plays a role in D-galactose detoxification. {ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:19754426, ECO:0000269|PubMed:9681006}.,FUNCTION: Catalyzes the interconversion between UDP-glucose and UDP-galactose and the interconversion between UDP-arabinose and UDP-xylose. Cooperates with UGE2 in pollen development. {ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119, ECO:0000269|PubMed:19754426, ECO:0000269|Ref.6}. MISCELLANEOUS: Does not seem to need NAD for activity. PATHWAY: Carbohydrate metabolism; galactose metabolism.; PATHWAY: Nucleotide-sugar biosynthesis; UDP-L-arabinose biosynthesis; UDP-L-arabinose from UDP-alpha-D-xylose: step 1/1.; PATHWAY: Cell wall biogenesis; cell wall polysaccharide biosynthesis. ARA:AT1G12780-MONOMER;MetaCyc:AT1G12780-MONOMER; R-ATH-70370; 5.1.3.2;5.1.3.5; Galactose metabolism (00052),Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Metabolic pathways (01100) 5.1.3.2; 5.1.3.5 39158,38910,33465 Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 (EC 5.1.3.2) (EC 5.1.3.5) (UDP-D-xylose 4-epimerase) (UDP-L-arabinose 4-epimerase) (UDP-galactose 4-epimerase 1) (UDP-glucose 4-epimerase 1) (AtUGE1),Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3 (EC 5.1.3.2) (EC 5.1.3.5) (UDP-D-xylose 4-epimerase) (UDP-L-arabinose 4-epimerase) (UDP-galactose 4-epimerase 3) (UDP-glucose 4-epimerase 3) (AtUGE3),UDP-D-glucose/UDP-D-galactose 4-epimerase 3 cytosol [GO:0005829]; plasma membrane [GO:0005886]; UDP-arabinose 4-epimerase activity [GO:0050373]; UDP-glucose 4-epimerase activity [GO:0003978]; capsule polysaccharide biosynthetic process [GO:0045227]; cell wall organization [GO:0071555]; galactose metabolic process [GO:0006012]; UDP-L-arabinose biosynthetic process [GO:0033358],UDP-arabinose 4-epimerase activity [GO:0050373]; UDP-glucose 4-epimerase activity [GO:0003978]; capsule polysaccharide biosynthetic process [GO:0045227]; cell wall organization [GO:0071555]; galactose metabolic process [GO:0006012]; pollen development [GO:0009555]; UDP-L-arabinose biosynthetic process [GO:0033358],UDP-glucose 4-epimerase activity [GO:0003978]; galactose metabolic process [GO:0006012] TISSUE SPECIFICITY: Ubiquitously expressed. Highest expression in stems and roots. {ECO:0000269|PubMed:12419184, ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119, ECO:0000269|PubMed:8615692}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12419184, ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119}. locus:2010371;,locus:2015253; AT1G12780,AT1G63180 UDP-D-glucose UDP-D-galactose 4-epimerase 3 NA NA NA NA NA NA NA ENOG411E9HS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0308100 protein (Fragment),Os04g0307900 protein Q0JE99,A0A0P0W975 Q0JE99_ORYSJ,A0A0P0W975_ORYSJ Os04g0308100 Os04g0308100 OSNPB_040308100,Os04g0307900 OSNPB_040307900 ENOG411E9HP Q5XEN4 Q5XEN4_ARATH At2g37950 (RING/FYVE/PHD zinc finger superfamily protein) 22504 At2g37950 (RING/FYVE/PHD zinc finger superfamily protein) integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270]; pollen development [GO:0009555] locus:2065620; AT2G37950 RINGv NA NA NA NA NA NA NA ENOG411E9HQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTP-binding protein LepA C-terminus NA NA NA NA NA NA NA ENOG411ED6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411ED6J O04488,Q3E9H1,F4HUI9,F4IDS9 FBLK1_ARATH,FB259_ARATH,F4HUI9_ARATH,F4IDS9_ARATH F-box/LRR-repeat/kelch-repeat protein At1g09650,Putative F-box protein At5g16285,F-box and associated interaction domains-containing protein,F-box associated ubiquitination effector family protein 43555,10322,34708,40715 F-box/LRR-repeat/kelch-repeat protein At1g09650,Putative F-box protein At5g16285,F-box and associated interaction domains-containing protein,F-box associated ubiquitination effector family protein response to chitin [GO:0010200] locus:2024437;,locus:504954806;,locus:4515102531;,locus:2034715; AT1G09650,AT5G16285,AT1G14315,AT1G12490 f-box family NA NA NA NA NA NA NA ENOG411ED6N GLP9 Q9LEA7,Q9FMB0,Q9FMA6,Q9FMA8,Q9FMA9,A0A1P8BC77,F4KCZ4,A0A1P8BH00 GL18_ARATH,GL19_ARATH,GL112_ARATH,GL111_ARATH,GL110_ARATH,A0A1P8BC77_ARATH,F4KCZ4_ARATH,A0A1P8BH00_ARATH Germin-like protein subfamily 1 member 8,Putative germin-like protein subfamily 1 member 9,Putative germin-like protein subfamily 1 member 12,Germin-like protein subfamily 1 member 11,Germin-like protein subfamily 1 member 10,RmlC-like cupins superfamily protein FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 23587,23884,24152,23650,23631,26384,11510,19748 Germin-like protein subfamily 1 member 8,Putative germin-like protein subfamily 1 member 9,Putative germin-like protein subfamily 1 member 12,Germin-like protein subfamily 1 member 11,Germin-like protein subfamily 1 member 10,RmlC-like cupins superfamily protein apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; response to salt stress [GO:0009651],apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735],apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; response to salt stress [GO:0009651],extracellular region [GO:0005576]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735],nutrient reservoir activity [GO:0045735] locus:2130020;,locus:2152317;,locus:2152267;,locus:2152257;,locus:2152272; AT4G14630,AT5G38910,AT5G38960,AT5G38940,AT5G38930,AT5G38950 Cupin domain NA NA NA NA NA NA NA ENOG411ED6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2921) Os07g0580733 protein,Os07g0580766 protein A0A0N7KNR2,A0A0P0X7Z2 A0A0N7KNR2_ORYSJ,A0A0P0X7Z2_ORYSJ Os07g0580733 OSNPB_070580733,Os07g0580766 OSNPB_070580766 ENOG411ED6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411ED6D Q9FKE2 Q9FKE2_ARATH Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein RPS4) 139731 Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein RPS4) ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2153328; AT5G45230 NACHT domain NA NA NA NA NA NA NA ENOG411ED6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411ED6F TCX3,SOL1 Q8L548,A0A1I9LLY4 TCX3_ARATH,A0A1I9LLY4_ARATH Protein tesmin/TSO1-like CXC 3 (AtTCX3) (Protein TSO1-like 1) (Protein SOL1),Tesmin/TSO1-like CXC domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:22072982}. FUNCTION: Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. 66654,53260 Protein tesmin/TSO1-like CXC 3 (AtTCX3) (Protein TSO1-like 1) (Protein SOL1),Tesmin/TSO1-like CXC domain-containing protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. locus:2094344; AT3G22760 Pfam:CXC NA NA NA NA NA NA NA ENOG411ED6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0248900 protein,Expressed protein (Os11g0632200 protein),Os08g0459400 protein,Os05g0203500 protein (Fragment) B9G2B3,Q2R0U2,A0A0P0XGN9,A0A0P0WJ32 B9G2B3_ORYSJ,Q2R0U2_ORYSJ,A0A0P0XGN9_ORYSJ,A0A0P0WJ32_ORYSJ Os09g0248900 OsJ_28514 OSNPB_090248900,Os11g0632200 LOC_Os11g41410 OSNPB_110632200,Os08g0459400 OSNPB_080459400,Os05g0203500 OSNPB_050203500 ENOG411ED6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pentatricopeptide repeat-containing protein At2g15690-like NA NA NA NA NA NA NA ENOG411ED6T DUR Q9FI17,Q9SUN3,A0A1P8BDS3 ARAE4_ARATH,ARAE3_ARATH,A0A1P8BDS3_ARATH Putative UDP-arabinose 4-epimerase 4 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 4),Probable UDP-arabinose 4-epimerase 3 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 3),NAD(P)-binding Rossmann-fold superfamily protein PATHWAY: Nucleotide-sugar biosynthesis; UDP-L-arabinose biosynthesis; UDP-L-arabinose from UDP-alpha-D-xylose: step 1/1.; PATHWAY: Cell wall biogenesis; cell wall polysaccharide biosynthesis. ARA:AT5G44480-MONOMER;,ARA:AT4G20460-MONOMER; 5.1.3.5; 5.1.3.5 48345,45155,45551 Putative UDP-arabinose 4-epimerase 4 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 4),Probable UDP-arabinose 4-epimerase 3 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 3),NAD(P)-binding Rossmann-fold superfamily protein Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; UDP-arabinose 4-epimerase activity [GO:0050373]; UDP-glucose 4-epimerase activity [GO:0003978]; capsule polysaccharide biosynthetic process [GO:0045227]; galactose metabolic process [GO:0006012]; UDP-L-arabinose biosynthetic process [GO:0033358],integral component of membrane [GO:0016021]; UDP-glucose 4-epimerase activity [GO:0003978]; galactose metabolic process [GO:0006012] locus:2163401;,locus:2128634; AT5G44480,AT4G20460 RmlD substrate binding domain NA NA NA NA NA NA NA ENOG411ED6W A0A1P8AWA7 A0A1P8AWA7_ARATH Copine family protein 20771 Copine family protein integral component of membrane [GO:0016021] Copine NA NA NA NA NA NA NA ENOG411ED6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase-like (Os01g0595600 protein) (cDNA clone:J013082F17, full insert sequence) Q8L562 Q8L562_ORYSJ Os01g0595600 Os01g0595600 B1103C09.20 OSNPB_010595600 P0451D05.33 ENOG411ED69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF NA NA NA NA NA NA NA ENOG411ED61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411ED63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Folate receptor family NA NA NA NA NA NA NA ENOG411ED62 SPH13 Q5XV33 SPH13_ARATH S-protein homolog 13 18399 S-protein homolog 13 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:2180667; AT5G26050 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411ED65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HMGL-like NA NA NA NA NA NA NA ENOG411ED64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:YDG_SRA NA NA NA NA NA NA NA ENOG411ED67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Two-component response regulator ORR32,Two-component response regulator ORR31,Os08g0280001 protein,Os08g0458400 protein,Os08g0458532 protein,Os08g0279900 protein Q6ZCY2,B9G193,A0A0P0XEH3,A0A0P0XH46,A0A0P0XHC9,A0A0P0XEF2 ORR32_ORYSJ,ORR31_ORYSJ,A0A0P0XEH3_ORYSJ,A0A0P0XH46_ORYSJ,A0A0P0XHC9_ORYSJ,A0A0P0XEF2_ORYSJ RR32 LOC_Os08g17760 P0026A08.18 P0026A08.19,RR31 LOC_Os08g35650 OsJ_27566 P0493A04.18 P0493A04.19,Os08g0280001 OSNPB_080280001,Os08g0458400 OSNPB_080458400,Os08g0458532 OSNPB_080458532,Os08g0279900 OSNPB_080279900 FUNCTION: Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. ENOG411ED66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJK Q8LG30 Q8LG30_ARATH Adhesive/proline-rich-like protein (At4g33660) (Cysteine-rich TM module stress tolerance protein) 8124 Adhesive/proline-rich-like protein (At4g33660) (Cysteine-rich TM module stress tolerance protein) plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006] locus:2134213; AT4G33660 NA Os07g0191650 protein (Fragment) A0A0P0X3B7 A0A0P0X3B7_ORYSJ Os07g0191650 OSNPB_070191650 ENOG411EFQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os05g0359500 protein Q6L474 Q6L474_ORYSJ Os05g0359500 OSJNBa0009L15.13 OSNPB_050359500 ENOG411EFQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0486400 protein A0A0P0X621 A0A0P0X621_ORYSJ Os07g0486400 OSNPB_070486400 ENOG411EFQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411EFQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EFQW BHLH109 Q5XVH0 BH109_ARATH Transcription factor bHLH109 (Basic helix-loop-helix protein 109) (AtbHLH109) (bHLH 109) (bHLH transcription factor bHLH109) FUNCTION: Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269|PubMed:23874927, ECO:0000269|PubMed:26973252}. 21674 Transcription factor bHLH109 (Basic helix-loop-helix protein 109) (AtbHLH109) (bHLH 109) (bHLH transcription factor bHLH109) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during somatic embryogenesis. {ECO:0000269|PubMed:26973252}. locus:2199307; AT1G68240 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EFQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQU Q9SIN7,Q58G56 Q9SIN7_ARATH,Q58G56_ARATH Vacuolar ATPase assembly integral membrane protein VMA21 homolog FUNCTION: Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum. {ECO:0000256|HAMAP-Rule:MF_03058}. 11368,11547 Vacuolar ATPase assembly integral membrane protein VMA21 homolog endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; ER to Golgi transport vesicle membrane [GO:0012507]; integral component of membrane [GO:0016021]; vacuolar proton-transporting V-type ATPase complex assembly [GO:0070072] locus:2065903;,locus:2198703; AT2G31710,AT1G05780 VMA21-like domain NA NA NA NA NA NA NA ENOG411EFQZ F4ITW2 F4ITW2_ARATH Gem-associated-like protein 21769 Gem-associated-like protein locus:2064102; AT2G38690 NA NA NA NA NA NA NA NA ENOG411EFQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys) tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated urm1 onto the uridine of tRNAs at wobble position NA NA NA NA NA NA NA ENOG411EFQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os01g0368500 protein A0A0P0V2M3 A0A0P0V2M3_ORYSJ Os01g0368500 OSNPB_010368500 ENOG411EFQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EMP24_GP25L NA NA NA NA NA NA NA ENOG411EFQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411EFQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Pfam:hATC NA NA NA NA NA NA NA ENOG411EFQJ Q3E9Y4,B3H4Z7,B3H6B6 Q3E9Y4_ARATH,B3H4Z7_ARATH,B3H6B6_ARATH Uncharacterized protein 23553,34146,29020 Uncharacterized protein locus:504955529; AT4G20095 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EFQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EFQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411EFQ2 AGL90,AGL36,AGL86,AGL92,AGL34 Q7XJK5,Q7XJK6,Q9C6V3,Q9C6V4,Q7X9H2,Q9SXC1,Q9XID9,F4HPG8,Q3E8P4 AGL90_ARATH,AGL36_ARATH,AGL86_ARATH,AGL92_ARATH,Q7X9H2_ARATH,Q9SXC1_ARATH,Q9XID9_ARATH,F4HPG8_ARATH,Q3E8P4_ARATH Agamous-like MADS-box protein AGL90,Agamous-like MADS-box protein AGL36,Agamous-like MADS-box protein AGL86,Agamous-like MADS-box protein AGL92,AGAMOUS-like-34 (MADS-box protein AGL34),F23H11.24 protein (MADS-box family protein) (Uncharacterized protein At1g59930),F23H11.23 protein (MADS-box family protein),MADS-box family protein FUNCTION: Probable transcription factor.,FUNCTION: Putative transcription factor. 36730,41811,36942,52211,39582,14869,14958,18385,12221 Agamous-like MADS-box protein AGL90,Agamous-like MADS-box protein AGL36,Agamous-like MADS-box protein AGL86,Agamous-like MADS-box protein AGL92,AGAMOUS-like-34 (MADS-box protein AGL34),F23H11.24 protein (MADS-box family protein) (Uncharacterized protein At1g59930),F23H11.23 protein (MADS-box family protein),MADS-box family protein nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2143769;,locus:2146794;,locus:2028601;,locus:2028591;,locus:2146809;,locus:2025996;,locus:2025986;,locus:2037940;,locus:2150386; AT5G27960,AT5G26650,AT1G31630,AT1G31640,AT5G26580,AT1G59930,AT1G59920,AT1G33070,AT5G35120 DNA binding transcription factor NA NA NA NA NA NA NA ENOG411EFQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein NA NA NA NA NA NA NA ENOG411EFQ0 O49304 O49304_ARATH At1g23130/T26J12_10 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (T26J12.10 protein) 17860 At1g23130/T26J12_10 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (T26J12.10 protein) defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2201195; AT1G23130 Bet v I allergen family protein NA NA NA NA NA NA NA ENOG411EFQ6 TCP6 Q9FLM6 TCP6_ARATH Transcription factor TCP6 27618 Transcription factor TCP6 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2163081; AT5G41030 TCP family transcription factor NA NA NA NA NA NA NA ENOG411EFQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) NA NA NA NA NA NA NA ENOG411EFQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Os01g0771800 protein,Os01g0771600 protein Q5ZD18,A0A0P0V8T3 Q5ZD18_ORYSJ,A0A0P0V8T3_ORYSJ Os01g0771800 OSNPB_010771800 P0665A11.37 P0695H10.8,Os01g0771600 OSNPB_010771600 ENOG411EFQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: anthranilate synthase component NA NA NA NA NA NA NA ENOG411DXFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Os01g0374501 protein A0A0P0V354 A0A0P0V354_ORYSJ Os01g0374501 OSNPB_010374501 ENOG411EKB9 Q9FX89,Q84W80 FB50_ARATH,FBL42_ARATH Putative F-box protein At1g49610,F-box/LRR-repeat protein At3g03360 43707,54948 Putative F-box protein At1g49610,F-box/LRR-repeat protein At3g03360 locus:2099644; AT1G49610,AT3G03360 Inherit from euNOG: F-Box protein NA NA NA NA NA NA NA ENOG411EKB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: calmodulin-binding family Calmodulin-binding family protein, putative, expressed (Os12g0149900 protein) (cDNA clone:001-035-B10, full insert sequence) (cDNA clone:J013162P21, full insert sequence) (cDNA clone:J033089L12, full insert sequence),Os11g0151002 protein Q2QXN6,A0A0P0XZ54 Q2QXN6_ORYSJ,A0A0P0XZ54_ORYSJ Os12g0149900 LOC_Os12g05420 Os12g0149900 OsJ_35233 OSNPB_120149900,Os11g0151002 OSNPB_110151002 ENOG411EKB0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411EKB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKBN MRO11.20 Q2HIM4,A0A1P8BA56 Q2HIM4_ARATH,A0A1P8BA56_ARATH At5g23760 (Copper transport protein family),Copper transport protein family 11569,10357 At5g23760 (Copper transport protein family),Copper transport protein family cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2172808; AT5G23760 NA NA NA NA NA NA NA NA ENOG411EKBM Q9FH17 Q9FH17_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to unknown protein) (Uncharacterized protein At5g56220) (Uncharacterized protein At5g56220/K24C1_3) 108399 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to unknown protein) (Uncharacterized protein At5g56220) (Uncharacterized protein At5g56220/K24C1_3) ADP binding [GO:0043531]; hydrolase activity [GO:0016787]; signal transduction [GO:0007165] locus:2156445; AT5G56220 resistance protein Os08g0499100 protein (cDNA, clone: J100087K14, full insert sequence) Q0J4Q5 Q0J4Q5_ORYSJ Os08g0499100 Os08g0499100 OSNPB_080499100 ENOG411EKBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411EKBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PI-PLC X domain-containing protein MAP3K-like protein (Os08g0103500 protein) (cDNA clone:001-008-F04, full insert sequence) (cDNA clone:J013124M22, full insert sequence) Q69U53 Q69U53_ORYSJ Os08g0103500 OsJ_25737 OSNPB_080103500 P0015C07.31 ENOG411EKBA A0A1I9LSY1,P92952,Q56W17,A0A1I9LRJ4,A0A1I9LSY5,A0A1I9LSY4,F4J6J4,A0A1I9LSY3,F4J6J5 A0A1I9LSY1_ARATH,P92952_ARATH,Q56W17_ARATH,A0A1I9LRJ4_ARATH,A0A1I9LSY5_ARATH,A0A1I9LSY4_ARATH,F4J6J4_ARATH,A0A1I9LSY3_ARATH,F4J6J5_ARATH RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,HAPp48,5 protein (Putative HAPp48,5 protein) (Reverse transcriptase-like protein) (Fragment),Reverse transcriptase-like protein 60950,48519,54805,36235,36239,94504,49262,46956,84875 RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,HAPp48,5 protein (Putative HAPp48,5 protein) (Reverse transcriptase-like protein) (Fragment),Reverse transcriptase-like protein RNA-directed DNA polymerase activity [GO:0003964],RNA-directed DNA polymerase activity [GO:0003964]; response to oxidative stress [GO:0006979] locus:2076076;,locus:2829273; AT3G24255 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EKBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKBW Q94C21,A8MR62 Q94C21_ARATH,A8MR62_ARATH At1g11480/T23J18_15 (Eukaryotic translation initiation factor-like protein) (Uncharacterized protein At1g11480),Eukaryotic translation initiation factor-like protein 64056,62917 At1g11480/T23J18_15 (Eukaryotic translation initiation factor-like protein) (Uncharacterized protein At1g11480),Eukaryotic translation initiation factor-like protein mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743],translation initiation factor activity [GO:0003743] locus:2200091; AT1G11480 NA NA NA NA NA NA NA NA ENOG411EKBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKBU TRY,ETC2,TCL1,TCL2 Q8GV05,Q84RD1,D3GKW6,A0A1P8AYG6,A0A1P8AYM2 TRY_ARATH,ETC2_ARATH,TCL1_ARATH,A0A1P8AYG6_ARATH,A0A1P8AYM2_ARATH Transcription factor TRY (Protein TRIPTYCHON),MYB-like transcription factor ETC2 (Protein ENHANCER OF TRY AND CPC 2),MYB-like transcription factor TCL1 (Protein TRICHOMELESS 1),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Trichome formation on inflorescence stems and pedicels. {ECO:0000269|PubMed:17933793}. Has fewer trichomes than in the try single mutant but more than in the frc single mutant.,Produces less two-branched trichomes (~40%) than the frc single mutant.,Produces mostly two-branched trichomes.,Pleitropic effect: increase in trichome branch number which develop in clusters and have an increased amount of nuclear DNA.,Increase in the number of trichome branch points. Most mutants have four branch points but that number can range from 2 to 7.,Trichomes have only one branch point.,Same number of branch points as in trichomes of gl-3 single mutant.,Additive phenotype resulting in trichomes with up to 11 branch points.,Trichomes have two or three branch points.,Larger but unbranched trichome cells compared to wild type.,Fewer branch points in the heterozygous mutant than in the homozygous one.,Clusters of unbranched trichomes.,ectopic formation of trichomes on inflorescence stems and pedicels. Low penetrance of clustered trichomes-M. Hulskump-2002,Increased trichome density on inflorescences; Abnormal trichome patterning-J. Chen-2007 FUNCTION: Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}.,FUNCTION: MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15604688, ECO:0000269|PubMed:19818620}.,FUNCTION: MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation by direct binding to the cis-acting regulatory elements of GL1, thus suppressing the expression of GL1. {ECO:0000269|PubMed:17933793}. MISCELLANEOUS: 'Triptychon' means 'triptych' in German. This protein was called 'triptychon' because TRY regulates the branching of trichomes in three branches.,MISCELLANEOUS: Overexpression of ETC2 results in the suppression of trichomes and overproduction of root hairs, as observed for CPC, TRY, ETC1 and ETC3 (PubMed:15604688). In natural Arabidopsis populations the single amino acid substitution of Lys-19 to Glu might affect the stability of the ETC2 repressor and causes reduced trichome number (PubMed:19818620). {ECO:0000305|PubMed:15604688, ECO:0000305|PubMed:19818620}.,MISCELLANEOUS: Plants over-expressing TCL1 does not have any trichomes on rosette leaves, inflorescence stems, cauline leaves or floral organs. {ECO:0000305|PubMed:17933793}. 13006,13605,10494,6550,8862 Transcription factor TRY (Protein TRIPTYCHON),MYB-like transcription factor ETC2 (Protein ENHANCER OF TRY AND CPC 2),MYB-like transcription factor TCL1 (Protein TRICHOMELESS 1),Homeodomain-like superfamily protein nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; multicellular organism development [GO:0007275]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; negative regulation of trichome patterning [GO:1900033]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; root hair cell development [GO:0080147]; transcription, DNA-templated [GO:0006351]; trichome patterning [GO:0048629],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; multicellular organism development [GO:0007275]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; regulation of trichome morphogenesis [GO:2000039]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Ubiquitous in young leaves. Later, restricted to the leaf base in the trichome initiation zone. In mature leaves, confined to trichome cells. {ECO:0000269|PubMed:12356720}. TISSUE SPECIFICITY: Expressed in roots, leaves, siliques and inflorescences. {ECO:0000269|PubMed:12356720}.,TISSUE SPECIFICITY: Expressed in stomatal guard mother cells, young stomata and trichomes of young leaves, and inflorescences. {ECO:0000269|PubMed:15604688}.,TISSUE SPECIFICITY: Expressed in inflorescences and trichomes of rosette and cauline leaves. {ECO:0000269|PubMed:20622149}. locus:2163766;,locus:2064352;,locus:1009023162; AT5G53200,AT2G30420,AT2G30432 Transcription factor TRY NA NA NA NA NA NA NA ENOG411EKBR TOR1L4 Q93ZH1 TORL4_ARATH TORTIFOLIA1-like protein 4 67542 TORTIFOLIA1-like protein 4 microtubule [GO:0005874]; microtubule binding [GO:0008017] locus:2205739; AT1G27210 HEAT repeat NA NA NA NA NA NA NA ENOG411EKBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EKBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os02g0630000 protein (Fragment) A0A0P0VMA4 A0A0P0VMA4_ORYSJ Os02g0630000 OSNPB_020630000 ENOG411E16J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os01g0367300 protein (Fragment) A0A0P0V337 A0A0P0V337_ORYSJ Os01g0367300 OSNPB_010367300 ENOG411E16K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7),Os01g0787000 protein Q8S130,A0A0P0V950 Q8S130_ORYSJ,A0A0P0V950_ORYSJ P0415A04.18-1 prx19 Os01g0787000 OsJ_03715 OSNPB_010787000,Os01g0787000 OSNPB_010787000 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411E16M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Glycosyltransferase (EC 2.4.2.-) Q852E2 Q852E2_ORYSJ Os03g0849900 LOC_Os03g63280 Os03g0849900 OSJNBb0096M04.30 OSNPB_030849900 ENOG411E16N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os10g0440500 protein (Fragment) Q0IXG0 Q0IXG0_ORYSJ Os10g0440500 Os10g0440500 OSNPB_100440500 ENOG411E16C CYP21-1 O49605,A0A1P8B5U2 CP21A_ARATH,A0A1P8B5U2_ARATH Peptidyl-prolyl cis-trans isomerase CYP21-1 (PPIase CYP21-1) (EC 5.2.1.8) (Cyclophilin of 21 kDa 1) (Cyclophilin-21-1),Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}.,FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. 5.2.1.8 24594,18858 Peptidyl-prolyl cis-trans isomerase CYP21-1 (PPIase CYP21-1) (EC 5.2.1.8) (Cyclophilin of 21 kDa 1) (Cyclophilin-21-1),Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2131546; AT4G34960 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8),Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) (Fragment) Q69JF7,A0A0P0XPR5 Q69JF7_ORYSJ,A0A0P0XPR5_ORYSJ P0229B10.15-1 P0569E11.37-1 Os09g0537600 OsJ_30151 OSNPB_090537600,Os09g0537600 OSNPB_090537600 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411E16D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os07g0635800 protein (Selenium-binding protein-like) Q8LIR0 Q8LIR0_ORYSJ OJ1332_C12.119 Os07g0635800 OsJ_25273 OSNPB_070635800 ENOG411E16E Q9SZD0,F4JM55 Q9SZD0_ARATH,F4JM55_ARATH At4g28990 (RNA-binding protein-like protein) (Uncharacterized protein AT4g28990) (Uncharacterized protein F19B15.20),RNA-binding protein-like protein 39783,45327 At4g28990 (RNA-binding protein-like protein) (Uncharacterized protein AT4g28990) (Uncharacterized protein F19B15.20),RNA-binding protein-like protein metal ion binding [GO:0046872]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355] locus:2119971; AT4G28990 ZnF_RBZ Os02g0274700 protein (cDNA clone:001-201-C05, full insert sequence),Os06g0332900 protein (Fragment) B7EY91,A0A0P0WWI0 B7EY91_ORYSJ,A0A0P0WWI0_ORYSJ Os02g0274700 OSNPB_020274700,Os06g0332900 OSNPB_060332900 ENOG411E16F ELP5 F4IQJ2 ELP5_ARATH Elongator complex protein 5 (AtELP5) (Elongator component 5) FUNCTION: Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). {ECO:0000250}. 41428 Elongator complex protein 5 (AtELP5) (Elongator component 5) cytoplasm [GO:0005737]; Elongator holoenzyme complex [GO:0033588]; nucleus [GO:0005634]; transferase activity, transferring acyl groups [GO:0016746]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2062190; AT2G18410 Pfam:Hap2_elong Expressed protein (Os03g0201700 protein) Q10QC4 Q10QC4_ORYSJ Os03g0201700 LOC_Os03g10460 Os03g0201700 OsJ_09813 OSNPB_030201700 ENOG411E16G T22P22_200 Q9LYF0 Q9LYF0_ARATH At5g11810 (Rhomboid family protein) (Uncharacterized protein At5g11810/T22P22_200) (Uncharacterized protein T22P22_200) 33395 At5g11810 (Rhomboid family protein) (Uncharacterized protein At5g11810/T22P22_200) (Uncharacterized protein T22P22_200) cytosol [GO:0005829] locus:2181940; AT5G11810 NA Os02g0135600 protein (cDNA clone:J023034H09, full insert sequence) Q6Z0Z1 Q6Z0Z1_ORYSJ Os02g0135600 Os02g0135600 OsJ_05290 OSJNBa0081C13.4 OSNPB_020135600 P0585B01.31 ENOG411E16X O04544 O04544_ARATH At1g70000 (F20P5.26 protein) (MYB transcription factor) (Myb-like transcription factor family protein) (Uncharacterized protein At1g70000) 28793 At1g70000 (F20P5.26 protein) (MYB transcription factor) (Myb-like transcription factor family protein) (Uncharacterized protein At1g70000) nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to karrikin [GO:0080167]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:2020653; AT1G70000 Transcription factor NA NA NA NA NA NA NA ENOG411E16Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0518600 protein A0A0P0XQJ9 A0A0P0XQJ9_ORYSJ Os09g0518600 OSNPB_090518600 ENOG411E16Q Q9LMN5,Q9C6K4 Q9LMN5_ARATH,Q9C6K4_ARATH F16F4.11 protein (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At1g21200),Transcription factor (Uncharacterized protein At1g76870) (Uncharacterized protein F7O12.4) 50933,44957 F16F4.11 protein (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At1g21200),Transcription factor (Uncharacterized protein At1g76870) (Uncharacterized protein F7O12.4) transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2014942;,locus:2036262; AT1G21200,AT1G76870 NA Os12g0163500 protein (Fragment) A0A0P0Y7D2 A0A0P0Y7D2_ORYSJ Os12g0163500 OSNPB_120163500 ENOG411E16R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase transcription factor Myb/SANT-like Os01g0718900 protein A0A0P0V7G6 A0A0P0V7G6_ORYSJ Os01g0718900 OSNPB_010718900 ENOG411E16S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA leucine-rich repeat receptor-like kinase Os02g0153200 protein (cDNA clone:J013168E03, full insert sequence),Os02g0153100 protein (Putative leucine-rich repeat receptor-like kinase) Q0E3U9,Q66RK3 Q0E3U9_ORYSJ,Q66RK3_ORYSJ Os02g0153200 Os02g0153200 OSNPB_020153200,Os02g0153100 OsJ_05413 OSNPB_020153100 ENOG411E16U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transmembrane protein 205 Os11g0673100 protein (Seed maturation protein PM27, putative, expressed) (cDNA clone:001-208-D05, full insert sequence) (cDNA clone:J013153K10, full insert sequence) Q2QZT1 Q2QZT1_ORYSJ LOC_Os11g44940 Os11g0673100 OsJ_20902 OSNPB_110673100 ENOG411E16V Q9LSU9 Q9LSU9_ARATH AT3g25550/MWL2_17 (Trigger factor) 29390 AT3g25550/MWL2_17 (Trigger factor) cytosol [GO:0005829] locus:505006374; AT3G25545 NA Os01g0219000 protein Q9LWE3 Q9LWE3_ORYSJ Os01g0219000 Os01g0219000 OSNPB_010219000 P0483F08.1 P0489G09.16 ENOG411E16W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MA3 Os04g0482800 protein Q0JCA4 Q0JCA4_ORYSJ Os04g0482800 Os04g0482800 OSNPB_040482800 ENOG411E168 MYJ24.12 Q8VYP8,Q8L708 Q8VYP8_ARATH,Q8L708_ARATH Peptidoglycan-binding LysM domain-containing protein (Uncharacterized protein At5g23130),At5g08200 (Peptidoglycan-binding LysM domain-containing protein) (Uncharacterized protein At5g08200) 43206,44847 Peptidoglycan-binding LysM domain-containing protein (Uncharacterized protein At5g23130),At5g08200 (Peptidoglycan-binding LysM domain-containing protein) (Uncharacterized protein At5g08200) locus:2178272;,locus:2181539; AT5G23130,AT5G08200 lysM domain containing protein LysM domain containing protein, expressed (Os10g0485500 protein) Q7XD97 Q7XD97_ORYSJ Os10g0485500 LOC_Os10g34420 Os10g0485500 OSJNBa0029C15.5 OSNPB_100485500 ENOG411E169 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase (EC 2.8.2.-),Sulfotransferase (EC 2.8.2.-) (Fragment) Q7XIP6,A0A0P0VYI6 Q7XIP6_ORYSJ,A0A0P0VYI6_ORYSJ OJ1458_B07.102 OJ1003_C06.134 Os07g0644200 OSNPB_070644200,Os03g0363950 OSNPB_030363950 ENOG411E160 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0150700 protein (Putative F-box protein (SKP1 interacting partner 3-related)) Q84PX1 Q84PX1_ORYSJ P0443G08.125 Os08g0150700 OsJ_26045 OSNPB_080150700 ENOG411E161 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate-induced protein 1 conserved region Os06g0220000 protein (Fragment) Q0DDJ2 Q0DDJ2_ORYSJ Os06g0220000 Os06g0220000 OSNPB_060220000 ENOG411E162 F4IHD7 F4IHD7_ARATH Ist1p 45044 Ist1p protein transport [GO:0015031] locus:2046951; AT2G14830 Regulator of Vps4 activity in the MVB pathway NA NA NA NA NA NA NA ENOG411E163 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein LTV1 homolog Low temperature viability protein, expressed (Os03g0372700 protein),Os03g0372700 protein (Fragment) Q84TS4,A0A0P0VXX0 Q84TS4_ORYSJ,A0A0P0VXX0_ORYSJ OSJNBb0097F01.8 LOC_Os03g25620 Os03g0372700 OsJ_11010 OSNPB_030372700,Os03g0372700 OSNPB_030372700 ENOG411E164 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA xylanase inhibitor protein Xylanase inhibitor protein 1 (Class III chitinase homolog a) (RIXI protein),Chitinase III C10701-rice (EC 3.2.1.14) (Os11g0702100 protein) (Xylanase inhibitor protein 1, putative, expressed),Os11g0700900 protein,Chitinase (Chitinase III C10923-rice) (EC 3.2.1.14) (Os11g0700900 protein) (Xylanase inhibitor protein 1, putative, expressed) (cDNA clone:J033068O15, full insert sequence),Chitinase (EC 3.2.1.14) (Os08g0518900 protein),Glycosyl hydrolases family 18 (Os11g0701000 protein) (Xylanase inhibitor protein 1, putative, expressed) (cDNA clone:J033125A18, full insert sequence),Os08g0519300 protein (Fragment) Q7GCM7,Q53NL9,Q0IQY4,O49830,O49825,Q53NL1,A0A0P0XHR1 XIP1_ORYSJ,Q53NL9_ORYSJ,Q0IQY4_ORYSJ,O49830_ORYSJ,O49825_ORYSJ,Q53NL1_ORYSJ,A0A0P0XHR1_ORYSJ RIXI Chib3H-a Os11g0701800 LOC_Os11g47580 OsJ_34838,Os11g0702100 LOC_Os11g47600 Os11g0702100 OSNPB_110702100,Os11g0700900 OSNPB_110700900,Os11g0700900 LOC_Os11g47500 OsJ_34834 OSNPB_110700900,P0700D12.131 Os08g0518900 OsJ_27948 OSNPB_080518900 P0689E12.7,Os11g0701000 LOC_Os11g47510 Os11g0701000 OSNPB_110701000,Os08g0519300 OSNPB_080519300 FUNCTION: Fungal xylanase inhibitor. Possesses competitive inhibiting activity against fungal endo-1,4-beta-D-xylanases belonging to glycoside hydrolase family 11 (GH11). May function in plant defense against secreted fungal pathogen xylanases. Is similar to class III chitinases, but does not exhibit chitinase activity. {ECO:0000269|PubMed:15794761}. ENOG411E165 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Leaf senescence related protein-like protein (Os07g0256700 protein),Leaf senescence related protein-like protein (Os07g0255900 protein) Q84Z39,Q84Z44 Q84Z39_ORYSJ,Q84Z44_ORYSJ P0458G06.122 Os07g0256700 OsJ_23746 OSNPB_070256700,P0458G06.113 Os07g0255900 OsJ_23743 OSNPB_070255900 ENOG411E166 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os03g0828600 protein A0A0N7KIB8 A0A0N7KIB8_ORYSJ Os03g0828600 OSNPB_030828600 ENOG411E167 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Class S F-box protein Os02g0563800 protein (cDNA clone:J033095G22, full insert sequence),Os05g0520000 protein,Os05g0521400 protein Q6Z7F7,B9FL67,A0A0P0WPQ2 Q6Z7F7_ORYSJ,B9FL67_ORYSJ,A0A0P0WPQ2_ORYSJ Os02g0563800 Os02g0563800 OJ1712_E04.16 OSNPB_020563800 P0020C11.5,Os05g0520000 OsJ_19235 OSNPB_050520000,Os05g0521400 OSNPB_050521400 ENOG411EB89 CDF5 Q9SEZ3 CDF5_ARATH Cyclic dof factor 5 (Dof zinc finger protein DOF1.10) (AtDOF1.10) (H-protein promoter-binding factor 2b) DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:19619493}. FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. 44007 Cyclic dof factor 5 (Dof zinc finger protein DOF1.10) (AtDOF1.10) (H-protein promoter-binding factor 2b) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2007151; AT1G69570 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EB88 SMXL2 Q9M0C5 SMXL2_ARATH Protein SMAX1-LIKE 2 (AtSMXL2) DISRUPTION PHENOTYPE: No visible phenotype under continuous red light (PubMed:26754282). Smax1 and smxl2 double mutants have substential reduction in hypocotyl elongation (PubMed:26754282). {ECO:0000269|PubMed:26754282}. FUNCTION: Probable component of a transcriptional corepressor complex that acts specifically in the karrikin pathway (PubMed:26754282). Controls seedling growth redundantly with SMAX1, but is not involved in leaf morphology, shoot branching or germination control (PubMed:26754282). {ECO:0000269|PubMed:26754282}. 101395 Protein SMAX1-LIKE 2 (AtSMXL2) circadian rhythm [GO:0007623]; protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; response to strigolactone [GO:1902347]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings and leaves. Detected in roots and axillary branches. {ECO:0000269|PubMed:23893171}. locus:2118806; AT4G30350 Inherit from KOG: Heat shock protein NA NA NA NA NA NA NA ENOG411EB85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class Os01g0650800 protein (Fragment),Os03g0380600 protein Q0JKT8,A0A0P0VY20 Q0JKT8_ORYSJ,A0A0P0VY20_ORYSJ Os01g0650800 Os01g0650800 OSNPB_010650800,Os03g0380600 OSNPB_030380600 ENOG411EB84 IDH2,IDH4 P93032,Q9LQK9 IDH2_ARATH,IDH4_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial (EC 1.1.1.41) (IDH-II) (Isocitric dehydrogenase 2) (NAD(+)-specific ICDH 2),Putative isocitrate dehydrogenase [NAD] subunit-like 4 (IDH-IV) (Isocitric dehydrogenase-like protein 4) (NAD(+)-specific ICDH 4) FUNCTION: Performs an essential role in the oxidative function of the citric acid cycle. {ECO:0000269|Ref.6}.,FUNCTION: Performs an essential role in the oxidative function of the citric acid cycle. {ECO:0000250}. MetaCyc:AT2G17130-MONOMER; R-ATH-71403; 1.1.1.41; 1.1.1.41 39590,32851 Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial (EC 1.1.1.41) (IDH-II) (Isocitric dehydrogenase 2) (NAD(+)-specific ICDH 2),Putative isocitrate dehydrogenase [NAD] subunit-like 4 (IDH-IV) (Isocitric dehydrogenase-like protein 4) (NAD(+)-specific ICDH 4) mitochondrion [GO:0005739]; isocitrate dehydrogenase (NAD+) activity [GO:0004449]; metal ion binding [GO:0046872]; tricarboxylic acid cycle [GO:0006099],oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616] TISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in roots, stems and leaves. {ECO:0000269|PubMed:16527867, ECO:0000269|Ref.6}. locus:2827696;,locus:2033713; AT2G17130,AT1G32480 Isocitrate/isopropylmalate dehydrogenase NA NA NA NA NA NA NA ENOG411EB87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nudix hydrolase 17 mitochondrial-like NA NA NA NA NA NA NA ENOG411EB81 MCL19.20,MCL19.19 Q1PE50,Q5XV21,Q8H1S2,Q9FNK9,F4JUP0 Q1PE50_ARATH,Q5XV21_ARATH,Q8H1S2_ARATH,Q9FNK9_ARATH,F4JUP0_ARATH Uncharacterized protein,Uncharacterized protein At4g25920 42200,33772,43977,43036,42806 Uncharacterized protein,Uncharacterized protein At4g25920 locus:2120770;,locus:2161448;,locus:2120750;,locus:2161443;,locus:2129560; AT4G25930,AT5G46140,AT4G25920,AT5G46130,AT4G14260 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EB83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UBX domain protein Os07g0294500 protein A0A0P0X4V9 A0A0P0X4V9_ORYSJ Os07g0294500 OSNPB_070294500 ENOG411EB82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EB8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB8N UMAMIT31,UMAMIT30 Q9M129,Q9M130,A0A1P8B6V7,A0A1P8B6W8,A0A1P8B3Q9,A0A1P8B6W1 WTR30_ARATH,WTR29_ARATH,A0A1P8B6V7_ARATH,A0A1P8B6W8_ARATH,A0A1P8B3Q9_ARATH,A0A1P8B6W1_ARATH WAT1-related protein At4g01450,WAT1-related protein At4g01440,WAT1-related protein 39775,40443,28634,29881,29137,35389 WAT1-related protein At4g01450,WAT1-related protein At4g01440,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2116967;,locus:2125172; AT4G01450,AT4G01440 Nodulin MtN21 family protein NA NA NA NA NA NA NA ENOG411EB8I ARR6 Q9ZWS6 ARR6_ARATH Two-component response regulator ARR6 Short hypocotyl under red light-J. Kieber-2004 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:14973166, ECO:0000269|PubMed:9482949}. 21239 Two-component response regulator ARR6 nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; cytokinin-activated signaling pathway [GO:0009736]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:11115887, ECO:0000269|PubMed:9482949}. locus:2170723; AT5G62920 REC NA NA NA NA NA NA NA ENOG411EB8K AKT6 Q8GXE6 AKT6_ARATH Potassium channel AKT6 (Potassium channel SPIK) (Shaker pollen inward rectifier K(+) channel) Impaired pollen tube growth (no effect on fertility)-H. Sentenac-2002 FUNCTION: Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane. Plays an important role in pollen tube development. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins. {ECO:0000269|PubMed:11825875}. 99215 Potassium channel AKT6 (Potassium channel SPIK) (Shaker pollen inward rectifier K(+) channel) integral component of plasma membrane [GO:0005887]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391] TISSUE SPECIFICITY: Predominantly expressed in flowers; especially in pollen. {ECO:0000269|PubMed:10852932, ECO:0000269|PubMed:11825875}. locus:2050276; AT2G25600 Shaker Pollen Inward K channel NA NA NA NA NA NA NA ENOG411EB8J PAP25,PAP6 O23244,Q9C510 PPA25_ARATH,PPA6_ARATH Purple acid phosphatase 25 (EC 3.1.3.2),Purple acid phosphatase 6 (EC 3.1.3.2) ARA:AT4G36350-MONOMER;,ARA:AT1G56360-MONOMER; 3.1.3.2 52969,52830 Purple acid phosphatase 25 (EC 3.1.3.2),Purple acid phosphatase 6 (EC 3.1.3.2) cell wall [GO:0005618]; extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; phosphate-containing compound metabolic process [GO:0006796],extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:16244908}. locus:2115345;,locus:2010753; AT4G36350,AT1G56360 Purple acid phosphatase NA NA NA NA NA NA NA ENOG411EB8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NA NA NA NA NA NA NA ENOG411EB8G VSP1,VSP2 O49195,O82122,F4KII6,B3H5J6 VSP1_ARATH,VSP2_ARATH,F4KII6_ARATH,B3H5J6_ARATH Vegetative storage protein 1,Vegetative storage protein 2 FUNCTION: May function as somatic storage protein during early seedling development. {ECO:0000250}. ARA:AT5G24780-MONOMER;,ARA:AT5G24770-MONOMER; 30262,29842,23441,25180 Vegetative storage protein 1,Vegetative storage protein 2 vacuole [GO:0005773]; acid phosphatase activity [GO:0003993]; nutrient reservoir activity [GO:0045735]; transcription factor binding [GO:0008134]; defense response [GO:0006952]; response to jasmonic acid [GO:0009753],cytosolic ribosome [GO:0022626]; vacuole [GO:0005773]; acid phosphatase activity [GO:0003993]; nutrient reservoir activity [GO:0045735]; defense response to insect [GO:0002213]; response to copper ion [GO:0046688]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to oxidative stress [GO:0006979]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in leaves and in gynoecia, especially in styles, the basal and distal ends of ovaries and in siliques.,TISSUE SPECIFICITY: Highly expressed in flowers, but also found in leaves, vegetative shoots, petioles, peduncles, and receptacles of floral organs. locus:2184585;,locus:2184580; AT5G24780,AT5G24770 vegetative storage protein NA NA NA NA NA NA NA ENOG411EB8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfite exporter TauE/SafE NA NA NA NA NA NA NA ENOG411EB8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EB8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EB8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB8Y TMK2,AtRLP5 Q9FYK0,Q9XID2 TMK2_ARATH,Q9XID2_ARATH Receptor-like kinase TMK2 (EC 2.7.11.1) (BARK1-like kinase 3) (Leucine-rich repeat receptor-like kinases TMK2) (Transmembrane kinase 2),F23M19.6 protein (Receptor like protein 5) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:23613767). Tmk1 and tmk2 double mutants, tmk2 and tmk3 double mutants, tmk1, tmk2 and tmk3 triple mutants and tmk2, tmk3 and tmk4 triple mutants have no visible phenotypes (PubMed:23613767). Tmk1, tmk2 and tmk4 triple mutants have a severe reduction in organ size, a substantial delay in growth and development, and a decrease in fertility (PubMed:23613767). Tmk1, tmk2, tmk3 and tmk4 quadruple mutants are embryo lethal (PubMed:23613767, PubMed:24578577). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:24578577}. FUNCTION: Involved in auxin signal transduction and cell expansion and proliferation regulation (PubMed:23613767). {ECO:0000269|PubMed:23613767}. 2.7.11.1 97406,30069 Receptor-like kinase TMK2 (EC 2.7.11.1) (BARK1-like kinase 3) (Leucine-rich repeat receptor-like kinases TMK2) (Transmembrane kinase 2),F23M19.6 protein (Receptor like protein 5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in siliques and flowers. {ECO:0000269|PubMed:23613767}. locus:2024016;,locus:2026160; AT1G24650,AT1G34290 Leucine-rich repeat NA NA NA NA NA NA NA ENOG411EB8X PMI15 Q9FF41 PMI15_ARATH Protein PLASTID MOVEMENT IMPAIRED 15 FUNCTION: Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. {ECO:0000269|PubMed:16778016}. 66688 Protein PLASTID MOVEMENT IMPAIRED 15 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]; response to blue light [GO:0009637] locus:2176692; AT5G38150 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411EB8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Asparagine synthase NA NA NA NA NA NA NA ENOG411EB8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein, expressed (Os12g0517100 protein),F-box domain containing protein (Os12g0517000 protein),F-box domain containing protein, expressed (Os12g0516900 protein),Os12g0526600 protein Q2QPU8,Q2QPU9,Q2QPV0,Q0IMZ0 Q2QPU8_ORYSJ,Q2QPU9_ORYSJ,Q2QPV0_ORYSJ,Q0IMZ0_ORYSJ LOC_Os12g33230 Os12g0517100 OsJ_36295 OSNPB_120517100,Os12g0517000 LOC_Os12g33220 Os12g0517000 OsJ_36294 OSNPB_120517000,LOC_Os12g33210 Os12g0516900 OSNPB_120516900,Os12g0526600 Os12g0526600 OSNPB_120526600 ENOG411EB8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DZ2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Q0JAD6 Q0JAD6_ORYSJ Os04g0604300 Os04g0604300 OSNPB_040604300 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DZ2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 Dehydration-responsive protein, putative, expressed (Os11g0186300 protein) Q0IU48 Q0IU48_ORYSJ Os11g0186300 LOC_Os11g08314 Os11g0186300 OSNPB_110186300 ENOG411DZ2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Mitochondrial transcription termination factor-like (Os06g0225100 protein) Q67UH1 Q67UH1_ORYSJ Os06g0225100 OsJ_20657 OSNPB_060225100 P0638H11.41 P0690H04.2 ENOG411EF43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF793) NA NA NA NA NA NA NA ENOG411E2P3 CML7,CML3,CML5,CML46,CML4 Q9LNE7,Q9SRR7,O22845,Q9LX26,Q9LX27 CML7_ARATH,CML3_ARATH,CML5_ARATH,CML46_ARATH,CML4_ARATH Calmodulin-like protein 7,Calmodulin-like protein 3,Calmodulin-like protein 5 (Protein MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3),Probable calcium-binding protein CML46 (Calmodulin-like protein 46),Calmodulin-like protein 4 Long root hairs-H. Cho-2009 FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 16956,17393,24114,17072,22377 Calmodulin-like protein 7,Calmodulin-like protein 3,Calmodulin-like protein 5 (Protein MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3),Probable calcium-binding protein CML46 (Calmodulin-like protein 46),Calmodulin-like protein 4 calcium ion binding [GO:0005509],peroxisome [GO:0005777]; calcium ion binding [GO:0005509],endomembrane system [GO:0012505]; integral component of endosome membrane [GO:0031303]; calcium ion binding [GO:0005509],endomembrane system [GO:0012505]; calcium ion binding [GO:0005509] locus:2198781;,locus:2079641;,locus:2058198;,locus:2081147;,locus:2081287; AT1G05990,AT3G07490,AT2G43290,AT3G59450,AT3G59440 calmodulin-like protein Probable calcium-binding protein CML28 (Calmodulin-like protein 28),Os12g0228800 protein (Fragment) Q2QVI1,A0A0P0Y8M8 CML28_ORYSJ,A0A0P0Y8M8_ORYSJ CML28 Os12g0228800 LOC_Os12g12730,Os12g0228800 OSNPB_120228800 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E2PE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat Shock Protein Os05g0296800 protein A0A0P0WKH7 A0A0P0WKH7_ORYSJ Os05g0296800 OSNPB_050296800 ENOG411E2PD Q9SFG2 Q9SFG2_ARATH At3g05980 (F2O10.6 protein) 27647 At3g05980 (F2O10.6 protein) locus:2083018; AT3G05980 NA NA NA NA NA NA NA NA ENOG411E2PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os02g0230500 protein A0A0P0VGQ8 A0A0P0VGQ8_ORYSJ Os02g0230500 OSNPB_020230500 ENOG411E2PM BHLH107,BHLH106 Q9LET0,O80674,F4J0S3 BH107_ARATH,BH106_ARATH,F4J0S3_ARATH Putative transcription factor bHLH107 (Basic helix-loop-helix protein 107) (AtbHLH107) (bHLH 107) (Transcription factor EN 55) (bHLH transcription factor bHLH107),Transcription factor bHLH106 (Basic helix-loop-helix protein 106) (AtbHLH106) (bHLH 106) (Transcription factor EN 56) (bHLH transcription factor bHLH106),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 25754,27978,11926 Putative transcription factor bHLH107 (Basic helix-loop-helix protein 107) (AtbHLH107) (bHLH 107) (Transcription factor EN 55) (bHLH transcription factor bHLH107),Transcription factor bHLH106 (Basic helix-loop-helix protein 106) (AtbHLH106) (bHLH 106) (Transcription factor EN 56) (bHLH transcription factor bHLH106),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],chloroplast envelope [GO:0009941]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; hyperosmotic salinity response [GO:0042538]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2103560;,locus:2063203; AT3G56770,AT2G41130 Transcription factor Helix-loop-helix DNA-binding domain containing protein, expressed (Os03g0811400 protein) (Putative DNA binding protein) Q7XZF8 Q7XZF8_ORYSJ Os03g0811400 LOC_Os03g59670 OSJNBb0033J23.9 OSNPB_030811400 ENOG411E2PJ Q5BPR9 Q5BPR9_ARATH CHUP1-like protein 43002 CHUP1-like protein chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; chloroplast organization [GO:0009658] locus:2040620; AT2G36650 protein CHUP1 chloroplastic-like NA NA NA NA NA NA NA ENOG411E2PW MUTE Q9M8K6 MUTE_ARATH Transcription factor MUTE (Basic helix-loop-helix protein 45) (AtbHLH45) (bHLH 45) (Transcription factor EN 20) (bHLH transcription factor bHLH045) Complete absence of stomata. Plants are small pale and sterile. Meristemoids undergo 3-6 rounds (vs. 1-3 rounds in wild type) of asymmetric division. These divisions create a rosette pattern in the mute epidermis with an arrested small triangular meristemoid at the center.,Mutants express high levels of stomatal lineage cell markers TMM and ERL1. Dwarf; Pale green; Sterile; Complete loss of stomata formation-K. Torii-2007 FUNCTION: Transcription factor. Together with FMA and SPCH, regulates the stomata formation. Required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. Promotes the conversion of the leaf epidermis into stomata. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. 22843 Transcription factor MUTE (Basic helix-loop-helix protein 45) (AtbHLH45) (bHLH 45) (Transcription factor EN 20) (bHLH transcription factor bHLH045) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; epidermal cell differentiation [GO:0009913]; stomatal complex development [GO:0010374]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Strongly expressed in meristemoids and at lower levels in guard mother cells (GMCs) and guard cells. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. TISSUE SPECIFICITY: Leaf epidermis and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17183265}. locus:2082400; AT3G06120 Transcription factor Os05g0597000 protein Q5KQG3 Q5KQG3_ORYSJ OSJNBb0086G17.12 Os05g0597000 OSNPB_050597000 ENOG411E2PV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP Os07g0129300 protein (Pathogenesis-related protein 1),Os07g0128700 protein (Putative pathogenesis-related protein),Os07g0128800 protein (Putative pathogenesis-related protein),Os07g0129200 protein (Fragment) Q6YT69,Q6YSG4,Q6YSG3,A0A0N7KMW0 Q6YT69_ORYSJ,Q6YSG4_ORYSJ,Q6YSG3_ORYSJ,A0A0N7KMW0_ORYSJ Os07g0129300 Os07g0129300 OSJNBa0088O14.11 OSNPB_070129300,B1249D05.33 Os07g0128700 OSNPB_070128700,Os07g0128800 B1249D05.35 OSJNBa0088O14.1 OSNPB_070128800,Os07g0129200 OSNPB_070129200 ENOG411E2PQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain C2 domain-containing protein-like (Os09g0251800 protein) (cDNA clone:001-004-C07, full insert sequence) (cDNA clone:006-210-E07, full insert sequence) Q6K295 Q6K295_ORYSJ Os09g0251800 B1080A02.31 OsJ_28538 OSNPB_090251800 P0574F11.8 ENOG411E2PP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L13 Os11g0425800 protein,Os07g0109500 protein (Putative 60S ribosomal protein) (cDNA clone:001-121-G03, full insert sequence) (cDNA clone:J033117G12, full insert sequence),60S ribosomal protein L13a-2, putative, expressed (Os03g0756000 protein) (Putative ribosomal protein L13a) (cDNA clone:001-207-A04, full insert sequence) (cDNA clone:J033150E09, full insert sequence) (cDNA, clone: J100020K24, full insert sequence),Os03g0755700 protein Q0IT25,Q7F225,Q75J18,A0A0P0W363 Q0IT25_ORYSJ,Q7F225_ORYSJ,Q75J18_ORYSJ,A0A0P0W363_ORYSJ Os11g0425800 Os11g0425800 OsJ_01877 OSNPB_110425800,OJ1567_G09.119 P0585H11.134 Os07g0109500 OSNPB_070109500,OSJNBb0081K01.9 LOC_Os03g54890 Os03g0756000 OsJ_12636 OSNPB_030756000,Os03g0755700 OSNPB_030755700 ENOG411E4FI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0624150 protein Q8LHK2 Q8LHK2_ORYSJ P0524E08.124 Os07g0624150 OSNPB_070624150 ENOG411E4FH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E4FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os04g0585000 protein Q0JAP9 Q0JAP9_ORYSJ Os04g0585000 Os04g0585000 OSNPB_040585000 ENOG411E4FJ SMALLER WITH VARIABLE BRANCHES Q9FXB0,Q9ZPZ4 Q9FXB0_ARATH,Q9ZPZ4_ARATH At1g56580/F25P12_18 (F25P12.97 protein),T31J12.3 protein (Uncharacterized protein At1g09310) 18406,19947 At1g56580/F25P12_18 (F25P12.97 protein),T31J12.3 protein (Uncharacterized protein At1g09310) trichome morphogenesis [GO:0010090],apoplast [GO:0048046] locus:2027579;,locus:2203043; AT1G56580,AT1G09310 Protein of unknown function DUF538 Expressed protein (Os12g0563600 protein),Os11g0683600 protein Q2QNJ0,A3CDU4 Q2QNJ0_ORYSJ,A3CDU4_ORYSJ Os12g0563600 LOC_Os12g37650 Os12g0563600 OSNPB_120563600,Os11g0683600 OsJ_34794 OSNPB_110683600 ENOG411E4FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-box-binding factor Os05g0437700 protein Q75HX9 Q75HX9_ORYSJ Os05g0437700 OJ1058_F05.8 OSJNBb0042J17.2 OSNPB_050437700 ENOG411E4FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E4FA Q9LE02 Q9LE02_ARATH DUF4228 domain protein (F15H18.19) (T10O22.26) 19835 DUF4228 domain protein (F15H18.19) (T10O22.26) locus:2014174; AT1G18290 NA NA NA NA NA NA NA NA ENOG411E4FC Q9ZUJ2 Q9ZUJ2_ARATH D-ribose-binding periplasmic protein (T2K10.6 protein) (Uncharacterized protein At1g60010) (Uncharacterized protein At1g60010/T2K10_6) 19603 D-ribose-binding periplasmic protein (T2K10.6 protein) (Uncharacterized protein At1g60010) (Uncharacterized protein At1g60010/T2K10_6) locus:2202690; AT1G60010 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E4FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Pollen Ole e I allergen and extensin family protein precursor expressed Os10g0149800 protein (Proline-rich protein, putative, expressed) (Putative proline-rich protein),Os10g0149400 protein,Os10g0149000 protein (Proline-rich protein, putative, expressed) (Putative proline-rich protein),Os10g0149200 protein (Proline-rich protein, putative) (Putative proline-rich protein),Os10g0150300 protein (Proline-rich protein, putative, expressed) (Putative proline-rich protein),Os07g0484900 protein (Fragment),Os10g0150000 protein (Fragment),Os10g0149100 protein (Fragment) Q7XGS8,A3C2K3,Q93WL9,Q7XGT1,Q7XGS5,C7J4I1,A0A0P0XSS9,A0A0P0XS15 Q7XGS8_ORYSJ,A3C2K3_ORYSJ,Q93WL9_ORYSJ,Q7XGT1_ORYSJ,Q7XGS5_ORYSJ,C7J4I1_ORYSJ,A0A0P0XSS9_ORYSJ,A0A0P0XS15_ORYSJ OSJNBa0031A07.8 LOC_Os10g05910 Os10g0149800 OSNPB_100149800,Os10g0149400 OsJ_30737 OSNPB_100149400,OSJNBa0031A07.3 LOC_Os10g05820 Os10g0149000 OSJNBb0016M10.13 OSNPB_100149000,OSJNBa0031A07.5 LOC_Os10g05860 Os10g0149200 OSNPB_100149200,OSJNBa0031A07.11 LOC_Os10g05950 Os10g0150300 OSNPB_100150300,Os07g0484900 Os07g0484900 OSNPB_070484900,Os10g0150000 OSNPB_100150000,Os10g0149100 OSNPB_100149100 ENOG411E4FE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3172) NA NA NA NA NA NA NA ENOG411E4FD SAP5 Q9LHJ8 SAP5_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 5 (AtSAP5) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 17669 Zinc finger A20 and AN1 domain-containing stress-associated protein 5 (AtSAP5) nucleus [GO:0005634]; DNA binding [GO:0003677]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414] locus:2101217; AT3G12630 zinc finger A20 and AN1 domain-containing stress-associated protein Zinc finger A20 and AN1 domain-containing stress-associated protein 1 (OsSAP1) (Multiple stress-responsive zinc finger protein ISAP1) (OsiSAP1),Zinc finger A20 and AN1 domain-containing stress-associated protein 11 (OsSAP11) A3C039,Q84PD8 SAP1_ORYSJ,SAP11_ORYSJ SAP1 ISAP1 Os09g0486500 LOC_Os09g31200 OsJ_028661,SAP11 ZFP60 Os08g0504700 LOC_Os08g39450 OJ1134_H03.11 OsJ_27862 OSJNBa0025J22.1 FUNCTION: May be involved in environmental stress response.,FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E4FG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HMG (high mobility group) box Os02g0670400 protein (Putative high mobility group protein) Q6ESQ0 Q6ESQ0_ORYSJ Os02g0670400 Os02g0670400 OJ1725_H08.41 OSNPB_020670400 P0684A08.27 ENOG411E4FF GSTU28 Q9C8M3 GSTUS_ARATH Glutathione S-transferase U28 (AtGSTU28) (EC 2.5.1.18) (GST class-tau member 28) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G53680-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25591 Glutathione S-transferase U28 (AtGSTU28) (EC 2.5.1.18) (GST class-tau member 28) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; toxin catabolic process [GO:0009407] locus:2024857; AT1G53680 Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411E4FX GID2 Q9STX3 GID2_ARATH F-box protein GID2 (Protein SLEEPY 1) Partial rescue of the sly1-10 dwarf phenotype but no significant suppression of the germination or fertility defects.,Increased seed dormancy dark green dwarf phenotype delayed flowering and reduced fertility.,Increased levels of RGA protein.,Resistant to the GA biosynthesis inhibitor Paclobutrazol.,Partial suppression of the dwarf phenotype.,Increased seed dormancy. Increased seed dormancy; Dwarf; Dark green; Late flowering; Reduced fertility-C. Steber-2003 FUNCTION: Essential component of the SCF-type E3 ligase complex, SCF(GID2), a complex that positively regulates the gibberellin signaling pathway. Upon gibberellin treatment, the SCF(GID2) complex mediates the ubiquitination and subsequent degradation of DELLA proteins (GAI, RGA and RGL2), some repressors of the gibberellin pathway, leading to activate the pathway. {ECO:0000269|PubMed:12724538, ECO:0000269|PubMed:15155881, ECO:0000269|PubMed:15161962, ECO:0000269|PubMed:15308775}. PATHWAY: Protein modification; protein ubiquitination. 17455 F-box protein GID2 (Protein SLEEPY 1) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; gibberellic acid mediated signaling pathway [GO:0009740]; protein ubiquitination [GO:0016567]; seed dormancy process [GO:0010162]; seed germination [GO:0009845] TISSUE SPECIFICITY: Expressed in all tissues tested, including rosette leaves, green siliques, flowers, stems, cauline leaves and seedlings. {ECO:0000269|PubMed:12724538}. locus:2135917; AT4G24210 F-Box protein F-box protein GID2 (Gibberellin-insensitive dwarf protein 2) (Protein GIBBERELLIN INSENSITIVE DWARF2) Q7XAK4 GID2_ORYSJ GID2 Os02g0580300 LOC_Os02g36974 FUNCTION: Essential component of some SCF-type E3 ligase complex that positively regulates the gibberellin signaling pathway. Upon gibberellin treatment, the complex mediates the ubiquitination and subsequent degradation of DELLA protein SLR1, a repressor of the gibberellin pathway, leading to activate the pathway. {ECO:0000269|PubMed:12649483, ECO:0000269|PubMed:14756772}. ENOG411E4FQ Q9SYL5,Q8RV68,Q5BQ23,A0A1P8AV61 Q9SYL5_ARATH,Q8RV68_ARATH,Q5BQ23_ARATH,A0A1P8AV61_ARATH F3F20.19 protein (FAM136A-like protein (DUF842)),Expressed protein (FAM136A-like protein (DUF842)),FAM136A-like protein (DUF842) 16493,17488,17122,13551 F3F20.19 protein (FAM136A-like protein (DUF842)),Expressed protein (FAM136A-like protein (DUF842)),FAM136A-like protein (DUF842) locus:2031958;,locus:2828428;,locus:2031943; AT1G05740,AT2G31725,AT1G05730 Eukaryotic protein of unknown function (DUF842) Expressed protein (Os11g0256200 protein) (cDNA clone:002-134-G01, full insert sequence) Q53L24 Q53L24_ORYSJ LOC_Os11g14990 Os11g0256200 OsJ_21320 OSNPB_110256200 ENOG411E4FP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4FR LTI65,RD29A Q04980,Q06738,F4KG52 LTI65_ARATH,RD29A_ARATH,F4KG52_ARATH Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B),Low-temperature-induced 78 kDa protein (Desiccation-responsive protein 29A),CAP160 protein DISRUPTION PHENOTYPE: Enhanced root growth, photosynthesis and water use efficiency (WUE) under salt stress. {ECO:0000269|PubMed:21374086}. FUNCTION: Involved in responses to abiotic stresses (PubMed:21374086). Regulates probably root elongation in cold conditions (PubMed:19470100). {ECO:0000269|PubMed:21374086, ECO:0000303|PubMed:19470100}. 65971,77856,65842 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B),Low-temperature-induced 78 kDa protein (Desiccation-responsive protein 29A),CAP160 protein abscisic acid-activated signaling pathway [GO:0009738]; leaf senescence [GO:0010150]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],cytoplasm [GO:0005737]; circadian rhythm [GO:0007623]; hyperosmotic salinity response [GO:0042538]; leaf senescence [GO:0010150]; regulation of root development [GO:2000280]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to mannitol [GO:0010555]; response to osmotic stress [GO:0006970]; response to reactive oxygen species [GO:0000302]; response to salt [GO:1902074]; response to salt stress [GO:0009651]; response to symbiotic bacterium [GO:0009609]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Accumulates rapidly in leaves, stems, roots, flower petals, filaments, and sepals during cold-acclimation. {ECO:0000269|PubMed:1830821, ECO:0000269|PubMed:8290624}. locus:2156652;,locus:2156662; AT5G52300,AT5G52310 low-temperature-induced 65 NA NA NA NA NA NA NA ENOG411E4FU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os10g0534400 protein) (cDNA clone:001-110-B04, full insert sequence) Q336X5 Q336X5_ORYSJ Os10g0534400 LOC_Os10g39000 Os10g0534400 OSNPB_100534400 ENOG411E4FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os09g0380600 protein (cDNA clone:001-119-B08, full insert sequence) Q6H5A6 Q6H5A6_ORYSJ Os09g0380600 Os09g0380600 OsJ_29189 OSNPB_090380600 P0027G10.40 ENOG411E4FV RKD3,RKD4 Q9FGD1,Q9LVU8 RKD3_ARATH,RKD4_ARATH Protein RKD3 (AtRKD3) (RWP-RK domain-containing protein 3),Protein RKD4 (AtRKD4) (RWP-RK domain-containing protein 4) FUNCTION: Putative transcription factor. {ECO:0000250}. 32393,29896 Protein RKD3 (AtRKD3) (RWP-RK domain-containing protein 3),Protein RKD4 (AtRKD4) (RWP-RK domain-containing protein 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; transcription, DNA-templated [GO:0006351] locus:2158113;,locus:2168412; AT5G66990,AT5G53040 RWP-RK domain-containing protein Os01g0551600 protein A0A0P0V3X6 A0A0P0V3X6_ORYSJ Os01g0551600 OSNPB_010551600 ENOG411E4F9 RAP2-11 Q6J9S1 RA211_ARATH Ethylene-responsive transcription factor RAP2-11 (Protein RELATED TO APETALA2 11) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 28375 Ethylene-responsive transcription factor RAP2-11 (Protein RELATED TO APETALA2 11) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to potassium ion [GO:0035865]; ethylene-activated signaling pathway [GO:0009873]; post-embryonic root development [GO:0048528]; response to ethylene [GO:0009723]; response to reactive oxygen species [GO:0000302]; transcription, DNA-templated [GO:0006351] locus:2183174; AT5G19790 Transcription factor NA NA NA NA NA NA NA ENOG411E4F8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0676900 protein (cDNA, clone: J100072B11, full insert sequence) A2ZWH5 A2ZWH5_ORYSJ Os01g0676900 OsJ_02993 OSNPB_010676900 ENOG411E4F1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0463500 protein (Putative zinc finger protein) (cDNA clone:001-015-H09, full insert sequence) Q6YUB0 Q6YUB0_ORYSJ Os08g0463500 B1111C03.32 B1116H04.20 OSNPB_080463500 ENOG411E4F0 Q6DBF6,A8MR38 Q6DBF6_ARATH,A8MR38_ARATH At4g02725 (Spindle pole body-associated protein),Spindle pole body-associated protein 18797,15766 At4g02725 (Spindle pole body-associated protein),Spindle pole body-associated protein chloroplast [GO:0009507]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:1006230337; AT4G02725 NA Os03g0701300 protein (Fragment) A0A0P0W1V6 A0A0P0W1V6_ORYSJ Os03g0701300 OSNPB_030701300 ENOG411E4F3 Q8L7R1,A0A1P8AUP6 Q8L7R1_ARATH,A0A1P8AUP6_ARATH At1g56300 (Chaperone DnaJ-domain superfamily protein) (DnaJ protein, putative),Chaperone DnaJ-domain superfamily protein 17729,13710 At1g56300 (Chaperone DnaJ-domain superfamily protein) (DnaJ protein, putative),Chaperone DnaJ-domain superfamily protein locus:2011846; AT1G56300 chaperone protein NA NA NA NA NA NA NA ENOG411E4F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0430600 protein (cDNA clone:006-304-G06, full insert sequence) (cDNA clone:J013170B19, full insert sequence) Q6ZKB9 Q6ZKB9_ORYSJ Os08g0430600 OJ1124_B05.8 OsJ_27406 OSNPB_080430600 ENOG411E4F5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Phospholipase A2 Probable phospholipase A2 homolog 2 (EC 3.1.1.4) Q9XG81 PLA22_ORYSJ PLA2-II Os03g0261100 LOC_Os03g15460 OsJ_10213 FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. {ECO:0000250}. ENOG411E4F4 DIR5 Q9SH66 DIR5_ARATH Dirigent protein 5 (AtDIR5) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. Enantiocomplementary dirigent protein that mediates the laccase-catalyzed enantioselective oxidative phenol coupling of (E)-coniferyl alcohol to (-)-pinoresinol. {ECO:0000269|PubMed:22854967}. 20726 Dirigent protein 5 (AtDIR5) apoplast [GO:0048046]; guiding stereospecific synthesis activity [GO:0042349]; isomerase activity [GO:0016853]; (-)-pinoresinol biosynthetic process [GO:1901599] TISSUE SPECIFICITY: Confined to shoot meristem, vascular region of cotyledons and siliques abscission zone. {ECO:0000269|PubMed:22854967}. locus:2024593; AT1G64160 Dirigent-like protein NA NA NA NA NA NA NA ENOG411E4F7 Q8GYE4 Q8GYE4_ARATH Myb-like HTH transcriptional regulator family protein (Uncharacterized protein At2g38300) 38925 Myb-like HTH transcriptional regulator family protein (Uncharacterized protein At2g38300) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2042927; AT2G38300 dna binding NA NA NA NA NA NA NA ENOG411E4F6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dishevelled associated activator of morphogenesis NA NA NA NA NA NA NA ENOG411EMGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit NA NA NA NA NA NA NA ENOG411EMGV ALA2 P98205,F4K8T6 ALA2_ARATH,F4K8T6_ARATH Phospholipid-transporting ATPase 2 (AtALA2) (EC 3.6.3.1) (Aminophospholipid ATPase 2) (Aminophospholipid flippase 2),Phospholipid-transporting ATPase (EC 3.6.3.1) FUNCTION: Involved in transport of phospholipids. Contributes to transmembrane flipping of lipids. Requires an interaction with a protein of the ALIS family for activity. Specific for phosphatidylserine and has no activity with lysolipid, phosphatidylcholine or phosphatidylethanolamine. {ECO:0000269|PubMed:20053675}. MISCELLANEOUS: The intracellular targeting signals and lipid specificity determinants reside in the catalytic ALA subunit. {ECO:0000269|PubMed:20053675}. ARA:AT5G44240-MONOMER; 3.6.3.1 124836,128757 Phospholipid-transporting ATPase 2 (AtALA2) (EC 3.6.3.1) (Aminophospholipid ATPase 2) (Aminophospholipid flippase 2),Phospholipid-transporting ATPase (EC 3.6.3.1) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012] locus:2167603; AT5G44240 E1-E2 ATPase Os05g0335401 protein (Fragment),Os09g0120800 protein (Fragment),Os04g0353000 protein A0A0P0WL26,A0A0P0WKY4,A0A0P0XII5,A0A0P0W988 A0A0P0WL26_ORYSJ,A0A0P0WKY4_ORYSJ,A0A0P0XII5_ORYSJ,A0A0P0W988_ORYSJ Os05g0335401 OSNPB_050335401,Os09g0120800 OSNPB_090120800,Os04g0353000 OSNPB_040353000 ENOG411EMGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os01g0229900 protein (Ubiquitin-conjugating enzyme-like),Os01g0229900 protein (cDNA clone:J013003E06, full insert sequence),Os01g0233900 protein (Fragment),Os03g0679300 protein Q5NB30,B7EAV1,A0A0N7KCM1,A0A0P0W1D5 Q5NB30_ORYSJ,B7EAV1_ORYSJ,A0A0N7KCM1_ORYSJ,A0A0P0W1D5_ORYSJ P0485D09.17-1 Os01g0229900 OSNPB_010229900,Os01g0229900 OSNPB_010229900,Os01g0233900 OSNPB_010233900,Os03g0679300 OSNPB_030679300 ENOG411EMGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Elongation factor Tu GTP binding domain NA NA NA NA NA NA NA ENOG411EMGB ATXR6 Q9FNE9 ATXR6_ARATH Histone-lysine N-methyltransferase ATXR6 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 34) (Trithorax-related protein 6) (TRX-related protein 6) DISRUPTION PHENOTYPE: No visible phenotype. Atxr5 and atxr6 double mutant is smaller than wild-type plants, shows partial decondensation of the chromocenter, decreased H3K27 monomethylation and increased DNA re-replication. {ECO:0000269|PubMed:19503079}. reduced H3K27me1 in vivo; partial heterochromatin decondensation; transcriptional activation of repressed heterochromatic elements FUNCTION: Histone methyltransferase that specifically monomethylates 'Lys-37' of histone H3 (H3K27me1). Has higher activity on nucleosomes containing H3.1 than H3.3. Involved in the formation of constitutive heterochromatin and the silencing of heterochromatic elements. May act as a positive regulator of the G1-S transition. Influences which sets of rRNA gene variants are expressed or silenced. Up-regulated by E2FB. {ECO:0000269|PubMed:16771839, ECO:0000269|PubMed:19503079, ECO:0000269|PubMed:20631708, ECO:0000269|PubMed:22549957}. MISCELLANEOUS: The binding to histone H3.2 is unaffected by mono-, di, or trimethylation at H3K9, but is strongly reduced by increasing levels of H3K4 methylation. {ECO:0000305|PubMed:20631708}. 2.1.1.43 39640 Histone-lysine N-methyltransferase ATXR6 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 34) (Trithorax-related protein 6) (TRX-related protein 6) nucleus [GO:0005634]; histone methyltransferase activity (H3-K27 specific) [GO:0046976]; metal ion binding [GO:0046872]; anther dehiscence [GO:0009901]; histone H3-K27 methylation [GO:0070734]; regulation of cell cycle [GO:0051726]; regulation of DNA replication [GO:0006275] TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers and siliques. Up-regulated in tissues where cell division is active. {ECO:0000269|PubMed:16771839}. locus:2169779; AT5G24330 Histone-lysine n-methyltransferase Os01g0965500 protein (Fragment) A0A0P0VDJ3 A0A0P0VDJ3_ORYSJ Os01g0965500 OSNPB_010965500 ENOG411EMGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-conjugating enzyme Os09g0294300 protein (Ubiquitin-conjugating enzyme-like protein),Os05g0557600 protein (Putative ubiquitin-conjugating enzyme),Os01g0677500 protein Q69LG5,Q6I602,A0A0P0V6G8 Q69LG5_ORYSJ,Q6I602_ORYSJ,A0A0P0V6G8_ORYSJ Os09g0294300 Os09g0294300 OsJ_28735 OSJNBa0044K01.7 OSNPB_090294300,Os05g0557600 OJ1214_E03.17 OsJ_19507 OSNPB_050557600,Os01g0677500 OSNPB_010677500 ENOG411EMGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os01g0232500 protein (Ubiquitin-conjugating enzyme-like),Os01g0232500 protein (Fragment) Q5NAY5,A0A0P0V098 Q5NAY5_ORYSJ,A0A0P0V098_ORYSJ Os01g0232500 Os01g0232500 OSNPB_010232500 P0702F03.1,Os01g0232500 OSNPB_010232500 ENOG411EMGE UBC23 Q9ZVX1 UBC23_ARATH Probable ubiquitin-conjugating enzyme E2 23 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 23) (Ubiquitin carrier protein 23) FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 122183 Probable ubiquitin-conjugating enzyme E2 23 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 23) (Ubiquitin carrier protein 23) cytosol [GO:0005829]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625] locus:2039380; AT2G16920 Ubiquitin-conjugating enzyme E2 Os01g0125900 protein (Ubiquitin-conjugating enzyme-like) Q5ZCB9 Q5ZCB9_ORYSJ Os01g0125900 Os01g0125900 OSNPB_010125900 P0037C04.36 ENOG411EMG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM NA NA NA NA NA NA NA ENOG411EH8G Q94AD1,Q3ECU3 D1861_ARATH,Q3ECU3_ARATH Putative DNA-binding protein At1g48610 (AT-hook DNA-binding motif-containing protein At1g48610),AT hook motif-containing protein FUNCTION: May bind DNA. {ECO:0000305}. 21674,20208 Putative DNA-binding protein At1g48610 (AT-hook DNA-binding motif-containing protein At1g48610),AT hook motif-containing protein nucleus [GO:0005634]; DNA binding [GO:0003677],DNA binding [GO:0003677] locus:2198050; AT1G48610 AT hook motif-containing protein NA NA NA NA NA NA NA ENOG411EH8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isochorismatase family NA NA NA NA NA NA NA ENOG411EH8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase NA NA NA NA NA NA NA ENOG411EH8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: CRAL TRIO domain protein NA NA NA NA NA NA NA ENOG411EH87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0301450 protein A0A0P0VI15 A0A0P0VI15_ORYSJ Os02g0301450 OSNPB_020301450 ENOG411EH86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411EH83 Q9SJY4,Q9SZK8 Q9SJY4_ARATH,Q9SZK8_ARATH At2g22510 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At2g22510),At4g38080 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein AT4g38080) (Uncharacterized protein F20D10.200) 13364,13894 At2g22510 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At2g22510),At4g38080 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein AT4g38080) (Uncharacterized protein F20D10.200) multicellular organism development [GO:0007275] locus:2041278;,locus:2121031; AT2G22510,AT4G38080 NA NA NA NA NA NA NA NA ENOG411EH80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative Ig domain NA NA NA NA NA NA NA ENOG411EH89 ATGRP-6,GRP16 Q9LY08,F4K823 Q9LY08_ARATH,F4K823_ARATH Oleosin 22300,18733 Oleosin integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid binding [GO:0008289]; lipid storage [GO:0019915],integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511] locus:2183399; AT5G07540 Oleosin NA NA NA NA NA NA NA ENOG411DTY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os01g0902100 protein A0A0P0VBQ7 A0A0P0VBQ7_ORYSJ Os01g0902100 OSNPB_010902100 ENOG411E1T0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger C3HC4 type domain containing protein expressed Os01g0894600 protein (Putative PIT1) (cDNA clone:J033024K13, full insert sequence),Os01g0894600 protein (Zinc finger protein-like) (cDNA clone:J013030F08, full insert sequence) Q5JLV4,Q5JLV3 Q5JLV4_ORYSJ,Q5JLV3_ORYSJ B1078G07.48-1 Os01g0894600 OSNPB_010894600,B1078G07.48-2 Os01g0894600 OSNPB_010894600 ENOG411E1T5 SCT Q8GYW8 SCT_ARATH Spermidine coumaroyl-CoA acyltransferase (SCT) (Spermidine dicoumaroyl transferase) (EC 2.3.1.249) FUNCTION: Spermidine coumaroyl-CoA acyltransferase that mediates the conversion of spermidine into dicoumaroyl-spermidine. {ECO:0000269|PubMed:19168716}. PATHWAY: Amine and polyamine metabolism; spermidine metabolism. {ECO:0000269|PubMed:19168716}. ARA:AT2G25150-MONOMER; 2.3.1.249 51751 Spermidine coumaroyl-CoA acyltransferase (SCT) (Spermidine dicoumaroyl transferase) (EC 2.3.1.249) N-acyltransferase activity [GO:0016410]; spermidine:coumaroyl CoA N-acyltransferase activity [GO:0080073]; polyamine biosynthetic process [GO:0006596]; spermidine metabolic process [GO:0008216] TISSUE SPECIFICITY: Mainly expressed in roots at low levels, specifically, in the root tip. {ECO:0000269|PubMed:19168716}. locus:2040169; AT2G25150 Transferase family NA NA NA NA NA NA NA ENOG411E1T9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0129500 protein A0A0P0XJZ9 A0A0P0XJZ9_ORYSJ Os09g0129500 OSNPB_090129500 ENOG411DZM5 D14 Q9SQR3 D14_ARATH Strigolactone esterase D14 (EC 3.1.-.-) (Protein DWARF 14) (AtD14) DISRUPTION PHENOTYPE: Increased shoot branching. {ECO:0000269|PubMed:22357928}. FUNCTION: Involved in strigolactone signaling pathway (PubMed:22357928). Does not move long distances acropetally in the plant to regulate shoot branching and is rapidly degraded in the presence of strigolactones (PubMed:24610723). Functions downstream of strigolactone synthesis, as a component of hormone signaling and as an enzyme that participates in the conversion of strigolactones to the bioactive form (PubMed:22357928). Acts probably as a strigolactone receptor (PubMed:24610723). Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds (PubMed:22357928). Hydrolyzes methyl carlactonoate (MeCLA), but not carlactone (CL) or carlactonoic acid (CLA) (PubMed:25425668). Hydrolyzes the butenolide ring of strigolactones (PubMed:23381136). The initial nucleophilic attack causes an electron shift, followed by the addition of a water molecule, to lead to the release of the ABC ring product and the formation of a 'Ser-97'-stabilized open lactone intermediate (PubMed:23381136). Has no esterase activity for 4-nitrophenyl butyrate (PubMed:23381136). Binds and hydrolyzes the synthetic strigolactone analog GR24 in vitro. Forms a stable covalent complex with the D-ring of strigolactone, which is essential for hormone bioactivity. The D-ring is attached to His-247 of the catalytic triad. The hydrolysis of strigolactone into a covalently linked intermediate molecule initiates a conformational change of D14 to facilitate interaction with MAX2 and formation of the D14-MAX2-SKP1/ASK1 complex to trigger strigolactone signaling. This mechanism defines D14 as a non-canonical hormone receptor with dual functions to generate and sense the active form of strigolactone (PubMed:27479325). {ECO:0000269|PubMed:22357928, ECO:0000269|PubMed:23381136, ECO:0000269|PubMed:24610723, ECO:0000269|PubMed:25425668, ECO:0000269|PubMed:27479325}. MISCELLANEOUS: The initial nucleophilic attack of strigolactones by D14 causes an electron shift, followed by the addition of a water molecule, to lead to the release of the ABC ring product and the formation of a S97-stabilized open lactone intermediate. 3.1.-.- 29625 Strigolactone esterase D14 (EC 3.1.-.-) (Protein DWARF 14) (AtD14) cytoplasm [GO:0005737]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cellular response to strigolactone [GO:1902348]; secondary shoot formation [GO:0010223]; strigolactone biosynthetic process [GO:1901601] TISSUE SPECIFICITY: Expressed at high levels in rosette and cauline leaves and at lower levels in axillary buds, inflorescences, stems, roots and developing vascular tissue of cotyledons. {ECO:0000269|PubMed:24610723}. locus:2095913; AT3G03990 Sigma factor sigB regulation protein Strigolactone esterase D14 (EC 3.1.-.-) (Protein DWARF 14) (Protein DWARF 88) (Protein HIGH-TILLERING DWARF 2) Q10QA5 D14_ORYSJ D14 D88 HTD2 Os03g0203200 LOC_Os03g10620 DISRUPTION PHENOTYPE: Increased tillers and reduced plant height, elevated levels of strigolactones. {ECO:0000269|PubMed:15659436, ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:19542179, ECO:0000269|PubMed:19603144}. FUNCTION: Involved in strigolactone (SL) signaling pathway. May function downstream of SL synthesis, as a component of hormone signaling or as an enzyme that participates in the conversion of SL to the bioactive form. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds (PubMed:19542179, PubMed:23301669). Strigolactone-dependent association of D14 with D3 and D53 triggers D53 ubiquitination and degradation (PubMed:24336200). Hydrolyzes the butenolide ring of SLs (PubMed:23381136, PubMed:24131983). A reaction product D-OH is trapped in the cavity of D14, inducing the interaction with SLR1, and probably with other proteins such as D3 and D53 (PubMed:24131983). Contributes to the negative regulation of gibberellin signaling (PubMed:24131983). {ECO:0000269|PubMed:19542179, ECO:0000269|PubMed:23301669, ECO:0000269|PubMed:23381136, ECO:0000269|PubMed:24131983, ECO:0000269|PubMed:24336200}. ENOG411DZM4 PHL6 Q949U2 PHL6_ARATH Myb family transcription factor PHL6 (Protein PHR1-LIKE 6) 50112 Myb family transcription factor PHL6 (Protein PHR1-LIKE 6) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2089260; AT3G13040 Myb-like DNA-binding domain containing protein Protein PHOSPHATE STARVATION RESPONSE 3 (OsPHR3),Os06g0703900 protein (Putative transfactor) (cDNA clone:001-027-G12, full insert sequence) (cDNA clone:J013127L15, full insert sequence) Q6YXZ4,Q5Z811 PHR3_ORYSJ,Q5Z811_ORYSJ PHR3 Os02g0139000 LOC_Os02g04640 OsJ_05314 OSJNBa0026E05.31,Os06g0703900 OJ1215_E11.18 OsJ_22555 OSNPB_060703900 FUNCTION: Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. ENOG411DZM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA However a recessive resistance can be associated with the xa13 allele (in which the promoter is mutated leading to reduced induction upon pathogen infection e.g. cv. IRBB13) specifically toward Xoo Philippine race 6 and Indian race PXO8 Bidirectional sugar transporter SWEET11 (OsSWEET11) (Disease resistant allele Xa13) Q6YZF3 SWT11_ORYSJ SWEET11 Os8N3 XA13 Os08g0535200 LOC_Os08g42350 OsJ_28080 OSJNBa0033D24.17 P0702C09.32 DISRUPTION PHENOTYPE: Reduced starch content in pollen and male sterility. Enhanced resistance against bacterial blight mediated by X.oryzae pv. oryzae (Xoo) strain PXO99(A). {ECO:0000269|PubMed:16648463, ECO:0000269|PubMed:21107422}. FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. Required for pollen viability. Involved in the transport of copper, in cooperation with COPT1 and COPT2 (PubMed:16648463, PubMed:20852017, PubMed:21107422, PubMed:25988582). {ECO:0000269|PubMed:16648463, ECO:0000269|PubMed:20852017, ECO:0000269|PubMed:21107422, ECO:0000269|PubMed:22157085, ECO:0000303|PubMed:25988582}.; FUNCTION: Confers sensitivity to bacterial blight mediated by X.oryzae pv. oryzae (Xoo) in its Xa13 allelic form (e.g. cv. IR24), probably by providing the sugar required for the pathogen growth, or by reducing copper contents in xylem. However, a recessive resistance can be associated with the xa13 allele (in which the promoter is mutated leading to reduced induction upon pathogen infection, e.g. cv. IRBB13), specifically toward Xoo Philippine race 6 and Indian race PXO8. {ECO:0000269|PubMed:16648463, ECO:0000269|PubMed:16798873, ECO:0000269|PubMed:19318375, ECO:0000269|PubMed:21107422, ECO:0000269|PubMed:23879865, ECO:0000303|PubMed:25988582}. ENOG411DZM6 AGL30,AGL65 Q1PFA4,Q7X9I0,F4IS82,A0A1P8AXD0,A0A1P8AR61,A0A1P8AR45,A0A1P8AR88,F4ICD1 AGL30_ARATH,AGL65_ARATH,F4IS82_ARATH,A0A1P8AXD0_ARATH,A0A1P8AR61_ARATH,A0A1P8AR45_ARATH,A0A1P8AR88_ARATH,F4ICD1_ARATH Agamous-like MADS-box protein AGL30,Agamous-like MADS-box protein AGL65,AGAMOUS-like 30,AGAMOUS-like 65 FUNCTION: Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.,FUNCTION: Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. 43789,44877,43198,36838,47784,32132,33511,38577 Agamous-like MADS-box protein AGL30,Agamous-like MADS-box protein AGL65,AGAMOUS-like 30,AGAMOUS-like 65 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen maturation [GO:0010152]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of pollen tube growth [GO:0080092]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021],protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. locus:2056760;,locus:2034949; AT2G03060,AT1G18750 Transcription factor MADS68 protein (Os11g0658700 protein),Os11g0658700 protein G0KY82,A0A0P0Y4X8 G0KY82_ORYSJ,A0A0P0Y4X8_ORYSJ MADS68 Os11g0658700 OSNPB_110658700,Os11g0658700 OSNPB_110658700 ENOG411DZM1 PCMP-H83,OTP86 Q9M1V3,A0A1I9LSS6 PP296_ARATH,A0A1I9LSS6_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 86),Tetratricopeptide repeat (TPR)-like superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19934379}. FUNCTION: Involved in RNA editing event in chloroplasts. Required for the editing of a single site in rps14 transcript. {ECO:0000269|PubMed:19934379}. 107520,98849 Pentatricopeptide repeat-containing protein At3g63370, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 86),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA processing [GO:0031425]; mRNA processing [GO:0006397]; RNA modification [GO:0009451],zinc ion binding [GO:0008270] locus:2077279; AT3G63370 Pentatricopeptide repeat-containing protein Os04g0469400 protein (Fragment) Q0JCH9 Q0JCH9_ORYSJ Os04g0469400 Os04g0469400 OSNPB_040469400 ENOG411DZM0 O04504 PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 68047 Pentatricopeptide repeat-containing protein At1g09820 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2024301; AT1G09820 Pentatricopeptide repeat-containing protein Os10g0484300 protein (Putative membrane-associated salt-inducible protein) (Rf1 protein, mitochondrial, putative, expressed) Q8LNU8 Q8LNU8_ORYSJ LOC_Os10g34310 Os10g0484300 OSJNBa0012L23.56 OSNPB_100484300 ENOG411DZM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein Heat shock 70 kDa protein BIP2 (Luminal-binding protein 2) (OsBiP2) Q53RJ5 BIP2_ORYSJ BIP2 Os03g0710500 LOC_Os03g50250 FUNCTION: Functions as chaperone during endoplasmic reticulum (ER) stress response. {ECO:0000250|UniProtKB:Q6Z7B0}. ENOG411DZM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os05g0586500 protein (Putative amino acid transporter family II) (cDNA clone:002-118-F05, full insert sequence) Q6L5C8 Q6L5C8_ORYSJ Os05g0586500 OJ1007_H05.2 OSNPB_050586500 ENOG411DZM9 KIN10B Q5E913 KN10B_ARATH Kinesin-like protein KIN-10B 69496 Kinesin-like protein KIN-10B chloroplast [GO:0009507]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2180122; AT5G02370 kinesin-like protein Kinesin-like protein KIN-10C,Kinesin-like protein Q6L512,A0A0P0WNF5 KN10C_ORYSJ,A0A0P0WNF5_ORYSJ KIN10C Os05g0459400 LOC_Os05g38480 OJ1281_H05.2 OsJ_18806,Os05g0459400 OSNPB_050459400 ENOG411DZM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Ankyrin-like protein-like (Os01g0189100 protein),Os01g0189700 protein (cDNA clone:001-031-C06, full insert sequence),Os01g0175400 protein (Putative ankyrin-like protein) (cDNA clone:J033087A12, full insert sequence),Os01g0189700 protein (Fragment),Os01g0189700 protein,Os01g0188900 protein (Fragment) Q5SNE4,B7E3W8,Q5VQZ7,A0A0N7KCH2,A0A0P0UZ87,A0A0P0UZ21,A0A0P0UZD9 Q5SNE4_ORYSJ,B7E3W8_ORYSJ,Q5VQZ7_ORYSJ,A0A0N7KCH2_ORYSJ,A0A0P0UZ87_ORYSJ,A0A0P0UZ21_ORYSJ,A0A0P0UZD9_ORYSJ Os01g0189100 Os01g0189100 OSNPB_010189100 P0512G09.27 P0710E05.5,Os01g0189700 OSNPB_010189700,Os01g0175400 OSJNBa0089K24.35 OSNPB_010175400,Os01g0188900 OSNPB_010188900 ENOG411DZMU Q08AA8,F4K2V8 Q08AA8_ARATH,F4K2V8_ARATH At5g27290 (Stress regulated protein),Stress regulated protein 37376,28757 At5g27290 (Stress regulated protein),Stress regulated protein chloroplast [GO:0009507] locus:2181221; AT5G27290 stress regulated protein ATP-dependent Zn proteases-like protein (Os01g0382700 protein),Os01g0382700 protein (Fragment) Q5VP08,A0A0P0V2T0 Q5VP08_ORYSJ,A0A0P0V2T0_ORYSJ Os01g0382700 OsJ_01867 OSJNBa0091E23.18-1 OSNPB_010382700,Os01g0382700 OSNPB_010382700 ENOG411DZMT SIN2,SHORT INTEGUMENT 2 Q8L607,A0A1P8AX81 SIN2_ARATH,A0A1P8AX81_ARATH Short integuments 2, mitochondrial (DAR GTPase 1),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype when heterozygous, but completely female sterile when homozygous. {ECO:0000269|PubMed:16849600}. Low germination rate; Slow growth; Increased branching; Abnormal pistil and sepals; Female sterile due to short integuments; Late flowering; Vascular discontinuity in petals-C. Gasser-2006 FUNCTION: GTPase that may function in mitochondrial ribosome assembly (Probable). Involved in a variety of growth processes during vegetative development and promotes growth and cell division in the developing integuments (PubMed:10835408, PubMed:16849600). {ECO:0000269|PubMed:10835408, ECO:0000269|PubMed:16849600}. 42984,30043 Short integuments 2, mitochondrial (DAR GTPase 1),P-loop containing nucleoside triphosphate hydrolases superfamily protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome biogenesis [GO:0042254],GTP binding [GO:0005525]; hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, inflorescences and siliques. {ECO:0000269|PubMed:16849600}. locus:2062657; AT2G41670 mitochondrial GTPase GTP-binding proteins, putative, expressed (Os11g0447300 protein) (Short integuments 2) Q53KJ1 Q53KJ1_ORYSJ Os11g0447300 LOC_Os11g26030 Os11g0447300 OsJ_13737 OSNPB_110447300 ENOG411DZMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0650500 protein (cDNA clone:J033027K21, full insert sequence),OSJNBb0103I08.17 protein (Os04g0543000 protein) (cDNA clone:002-102-B10, full insert sequence),Os07g0495150 protein,Os02g0650500 protein (Fragment) Q6H3Z1,Q7XUI8,A0A0P0X671,A0A0P0VMH5 Q6H3Z1_ORYSJ,Q7XUI8_ORYSJ,A0A0P0X671_ORYSJ,A0A0P0VMH5_ORYSJ Os02g0650500 OsJ_07735 OSJNBb0012J10.12 OSNPB_020650500 P0048B08.36,Os04g0543000 OSJNBb0103I08.17 OSNPB_040543000,Os07g0495150 OSNPB_070495150,Os02g0650500 OSNPB_020650500 ENOG411DZMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gal-bind_lectin Galactosyltransferase family-like protein (Os07g0194800 protein) (cDNA clone:J023004E20, full insert sequence),Hexosyltransferase (EC 2.4.1.-) (Fragment) Q6ZKZ6,A0A0N7KN28 Q6ZKZ6_ORYSJ,A0A0N7KN28_ORYSJ OJ1715_A07.11-1 Os07g0194800 OSNPB_070194800,Os07g0194800 OSNPB_070194800 ENOG411DZMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) A0A0P0XHK0 A0A0P0XHK0_ORYSJ Os08g0496200 OSNPB_080496200 ENOG411DZMS Q8S9L2 Q8S9L2_ARATH AT4G31410 protein (AT4g31410/F8F16_230) (E3 ubiquitin-protein ligase, putative (DUF1644)) 35608 AT4G31410 protein (AT4g31410/F8F16_230) (E3 ubiquitin-protein ligase, putative (DUF1644)) ligase activity [GO:0016874] locus:2128146; AT4G31410 expressed protein Os06g0693700 protein (cDNA clone:J013050J04, full insert sequence),Os06g0693700 protein (cDNA clone:J023125M06, full insert sequence),Os02g0150900 protein (cDNA clone:J013095D10, full insert sequence) (cDNA clone:J023134D10, full insert sequence) Q5Z8K7,Q5Z8K6,Q0E3W9 Q5Z8K7_ORYSJ,Q5Z8K6_ORYSJ,Q0E3W9_ORYSJ P0550B04.19-1 Os06g0693700 OSNPB_060693700,P0550B04.19-2 Os06g0693700 OsJ_22470 OSNPB_060693700,Os02g0150900 Os02g0150900 OSNPB_020150900 ENOG411DZMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411DZMY ELP6 Q8L9Y2 ELP6_ARATH Elongator complex protein 6 (AtELP6) (Elongator component 6) (UPF0405 protein ELP6) DISRUPTION PHENOTYPE: Narrow leaves and reduced root growth that results from a decreased cell division rate. Higher resistance to oxidative stress mediated by methyl viologen (MV) that blocks electron transport during photosynthesis and by CsCl in light. Accumulates anthocyanins. {ECO:0000269|PubMed:19500300}. Root growth sensitive to ABA-Z. Gong-2009 FUNCTION: Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). Promotes organs development by modulating cell division rate. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. {ECO:0000250, ECO:0000269|PubMed:19500300}. 29125 Elongator complex protein 6 (AtELP6) (Elongator component 6) (UPF0405 protein ELP6) cytoplasm [GO:0005737]; Elongator holoenzyme complex [GO:0033588]; nucleus [GO:0005634]; transferase activity, transferring acyl groups [GO:0016746]; negative regulation of anthocyanin metabolic process [GO:0031538]; positive regulation of cell proliferation [GO:0008284]; regulation of leaf development [GO:2000024]; regulation of transcription, DNA-templated [GO:0006355]; response to oxidative stress [GO:0006979]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, stems, roots, flowers, siliques and guard cells. {ECO:0000269|PubMed:19500300}. locus:2124651; AT4G10090 Uncharacterized conserved protein (DUF2348) Os03g0284000 protein A0A0P0VWA9 A0A0P0VWA9_ORYSJ Os03g0284000 OSNPB_030284000 ENOG411DZMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os03g0138700 protein (POT family protein, expressed) Q10S13 Q10S13_ORYSJ LOC_Os03g04570 Os03g0138700 OSNPB_030138700 ENOG411DZME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase Patatin (EC 3.1.1.-) Q8S0E1 Q8S0E1_ORYSJ Os01g0898500 OsJ_04417 OSNPB_010898500 P0506A10.18 P0674H09.35 FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411DZMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein NA NA NA NA NA NA NA ENOG411DZMG AHK2 Q9C5U2 AHK2_ARATH Histidine kinase 2 (EC 2.7.13.3) (Arabidopsis histidine kinase 2) (AtHK2) (Protein AUTHENTIC HIS-KINASE 2) DISRUPTION PHENOTYPE: Hypersensitivity to ABA, and strong drought and salinity tolerance. Slightly reduced sensitivity to cytokinin. More rapid germination, reduced requirement for light, and decreased far-red light sensitivity. Reduced sensitivity to N-isobutyl decanamide. Defects in procambium proliferation and absence of secondary growth. Enhanced freezing tolerance. Impaired meristematic development in seedlings. Disturbed cytokinin-mediated flower development abnormality. {ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290, ECO:0000269|PubMed:16361392, ECO:0000269|PubMed:16753566, ECO:0000269|PubMed:17965178, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:19913077, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:20463025}. No visible phenotype.,Strong cytokinin-insensitive phenotype.,Bolting time is slightly delayed (2 to 3 days) and the inflorescence stem length is reduced. However morphology and fertility of the flowers is relatively unaffected.,Compact rosettes with shortened petioles and small leaf blades.,Root elongation unaffected.,Semi-dwarf phenotype.,The hypocotyl length of the double mutant is slightly decreased; this effect is largely due to reduction in cell number rather than cell size.,The leaves of the double mutant expand more slowly than those of wildtype. At 17days after germination their surface area is 55% that of wildtype plants.,Aborted vascular system containing few protoxylem cells in the primary root. Normal adventitious root-vascular system.,Adventitious roots are normal.,Does not produce lateral roots from the primary root. However 10 days after germination lateral roots are formed at the upper part of the hypocotyl rather than at the root-hypocotyl junction.,Dwarf phenotype.,Growth severely affected during reproductive growth phase: onset of flowering varies with each individual plant.,Leaf shape slightly altered: longitudinal length of blade more affected than lateral length. Impaired leaf vasculature.,Leaves expand more slowly than those of wildtype controls.,Normal vascular system in adventitious roots although the hypocotyl and primary root develop aborted vascular tissues.,Postembryonic growth of roots (primary and lateral) severely impaired.,Reduced seedling size with small cotyledons slightly shortened hypocotyls (65% of wildtype) and significantly reduced root length.,The leaves of the triple mutant expand more slowly than those of wildtype. At 17 days after germination their surface area is 20% that of wildtype plants.,The rate of leaf primordial formation is slightly decreased but the phyllotaxy is normal.,Seedlings appear normal.,No inhibition of stimulation of cell division and greening of hypocotyl-derived calli when treated with cytokinin (similar to wildtype response).,Normal or slightly reduced sensitivity to cytokinin in shoot induction assay (exogenous application of cytokinins induces wildtype shoot formation).,Normal roots.,Smaller leaves and shorter stems than wildtype.,Cytokinin-induced inhibition of adventitious root formation similar to that observed with wildtype.,Normal or slightly reduced sensitivity to cytokinin in root growth assay (exogenous application of cytokinins inhibits wildtype root elongation).,Enhancement of the inhibition of cytokinin-induced stimulation of cell division and greening of hypocotyl-derived calli compared to the responsed observed with CRE1 single mutants (e.g. cre1-10).,Reduced sensitivity to cytokinin in root growth assay (exogenous application of cytokinins inhibits wildtype root elongation).,Early germination compared to wild-type.,Little difference in chlorophyll content compared to wild-type.,No loss of cytokinin-dependent chlorophyll retention in leaves (under dark conditions causing the so-called dark-induced senescence).,Shoot development indistinguishable from that of wild-type.,Similar to wild-type.,Chlorophyll content further reduced compared to single mutant ahk3-7.,Displays secondary lateral root branching (not seen in wild-type).,Downwards bending of cotyledons indicating differential growth in the adaxial and abaxial sides.,Enhancement of phenotype observed for single mutant ahk3-7: Reduced ability to respond to cytokinin by callus or shoot formation.,Enhancement of phenotype observed in single mutant ahk3-7: Mutant seedlings grow better and form darker green leaves in the presence of elevated levels of cytokinins in medium. Increased cytokinin resistance,Epidermal cells of fifth leaf at maturity are about double in size compared to wild-type cells. Leaves formed at later stages are similar to wild-type.,Further reduction of rosette diameter size compared to single mutant ahk3-7.,No alteration of flowering induction timing.,No alteration of rate of leaf formation.,Reduced length and width of leaves but overall form and heteroblasty is not altered.,Resistant to cytokinin-induced hypocotyl shortening.,Three- to tenfold higher cytokinin concentrations required to induce callus formation and growth. Shoot formation very rarely observed in double mutant explants.,Total loss of cytokinin-dependent chlorophyll retention in leaves (under dark conditions causing the so-called dark-induced senescence).,Two- to three-fold increase of concentrations of all zeatin metabolites.,Almost completely infertile but can be allowed to self-fertilize under favorable temperature and light conditions.,Chlorophyll content about 35% of that of wild-type.,Delay in flowering induction.,Delay in rate of leaf formation. Longer plastochrone.,Increase in trans-zeatin (16-fold) and trans-zeatin ribosides (9-fold) concentrations. 50-fold concentration increase for zeatin-O-glucoside.,Increased cytokinin resistance compared to double mutant ahk2-5 ahk3-7.,Increased seed size largely due to increased size of the embryo. Embryonic root epidermal cells increased 15% in number and 30% in size compared to wild-type.,Leaf epifermal cell size is increased about three-fold compared to wild-type cells in young as well as older leaves.,Shorter hypocotyls than wild-type when grown in white light but increase in length when grown in darkness (~25%) and red- and far-red-light.,Stronger reduction of shoot development compared to double mutant ahk2-5 ahk3-7.,With a few exceptions no increase in zeatin concentrations.,Reduced levels of cytokinin induced gene expression (AAR5-7).,Cytokinin insensitive (no inhibition of growth compared to wildtype).,Occasionally produces inflorescence stems with abnormal and non-functional flowers which did not produce seeds.,Shoot and root growth is very slow and leaf number is decreased compared to wildtype.,No significant response in the cytokinin-induced assay for stimulation of cell division and greening of hypocotyl-derived calli.,Prolonged plastochron.,Shorter root than wildtype plant.,The diameter of the shoot apical meristem is about three times smaller than that of wildtype.,The size and activity of the root apical meristem is decreased with respect to wildtype.,Small SAM and limited root growth. FUNCTION: Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feeds phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. Involved in meristems establishment in seedlings. Redundant negative regulator of drought and salt stress responses and abscisic acid (ABA) signaling. Together with AHK3, plays a negative regulatory role in cold stress signaling via inhibition of ABA response, occurring independently of the cold acclimation pathway. Redundant positive regulator of cytokinin signaling that regulates many developmental processes including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Contributes to vascular bundle formation and secondary growth in a cytokinin-dependent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Together with AHK4, required for growth and reproduction promotion stimulated by the endophytic fungus Piriformospora indica in a trans-zeatin-dependent manner. Required by the cytokinin-dependent flower development regulation pathway. {ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290, ECO:0000269|PubMed:16361392, ECO:0000269|PubMed:16753566, ECO:0000269|PubMed:17956858, ECO:0000269|PubMed:17965178, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18785832, ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:19913077, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:20463025}. 2.7.13.3 131860 Histidine kinase 2 (EC 2.7.13.3) (Arabidopsis histidine kinase 2) (AtHK2) (Protein AUTHENTIC HIS-KINASE 2) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cytokinin receptor activity [GO:0009884]; identical protein binding [GO:0042802]; kinase binding [GO:0019900]; phosphorelay sensor kinase activity [GO:0000155]; protein histidine kinase activity [GO:0004673]; protein histidine kinase binding [GO:0043424]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to cold [GO:0070417]; cytokinin-activated signaling pathway [GO:0009736]; multicellular organism development [GO:0007275]; negative regulation of iron ion transport [GO:0034757]; phloem or xylem histogenesis [GO:0010087]; regulation of chlorophyll catabolic process [GO:0010271]; regulation of flower development [GO:0009909]; regulation of meristem development [GO:0048509]; regulation of seed germination [GO:0010029]; regulation of shoot system development [GO:0048831]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to toxic substance [GO:0009636]; response to water deprivation [GO:0009414]; secondary growth [GO:0080117] DEVELOPMENTAL STAGE: In seedlings, mainly localized in meristematic tissues (e.g. shoot apical meristem SAM, root tips, and growing leaf and lateral root primordia). Present in all the vasculature and the shoot apical meristem (SAM) of the adult plant. In flowers, localized in carpels and developing ovules. In the root tips, expressed in and near the vascular initial cells. {ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:16753566}. TISSUE SPECIFICITY: Expressed in roots, leaves and flowers, mostly in the vascular tissues. Present in seedlings. {ECO:0000269|PubMed:11230578, ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290}. locus:2177261; AT5G35750 Histidine kinase Os10g0362300 protein (Fragment),Os10g0362300 protein A0A0P0XT94,A0A0P0XTU0 A0A0P0XT94_ORYSJ,A0A0P0XTU0_ORYSJ Os10g0362300 OSNPB_100362300 ENOG411DZMF AGL1,AGL5,SHP1 P29381,P29385,Q1PEE1,A0A1I9LM27,F4J705,A0A1I9LM26 AGL1_ARATH,AGL5_ARATH,Q1PEE1_ARATH,A0A1I9LM27_ARATH,F4J705_ARATH,A0A1I9LM26_ARATH Agamous-like MADS-box protein AGL1 (Protein SHATTERPROOF 1),Agamous-like MADS-box protein AGL5 (Protein SHATTERPROOF 2),Agamous-like MADS box protein AGL1/shatterproof 1 (K-box region and MADS-box transcription factor family protein),K-box region and MADS-box transcription factor family protein FUNCTION: Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. 28336,28157,27593,28975,31482,32030 Agamous-like MADS-box protein AGL1 (Protein SHATTERPROOF 1),Agamous-like MADS-box protein AGL5 (Protein SHATTERPROOF 2),Agamous-like MADS box protein AGL1/shatterproof 1 (K-box region and MADS-box transcription factor family protein),K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of growth [GO:0040008]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel development [GO:0048440]; plant ovule development [GO:0048481]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of growth [GO:0040008]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel development [GO:0048440]; plant ovule development [GO:0048481]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2052420;,locus:2099029; AT3G58780,AT2G42830 agamous-like MADS-box protein NA NA NA NA NA NA NA ENOG411DZMA FRS4 Q6NQJ7,A0A1P8AP14 FRS4_ARATH,A0A1P8AP14_ARATH Protein FAR1-RELATED SEQUENCE 4,FAR1-related sequence 4 FUNCTION: Putative transcription activator involved in regulating light control of development. 85151,78466 Protein FAR1-RELATED SEQUENCE 4,FAR1-related sequence 4 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585],zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2014639; AT1G76320 protein FAR1-RELATED SEQUENCE NA NA NA NA NA NA NA ENOG411DZMC AtATRIP,SUV2 C8KI33,A0A1P8BEL4 C8KI33_ARATH,A0A1P8BEL4_ARATH ATR interacting protein (Protein dimerization),Protein dimerization UVB hypersensitive defective in DNA damage response. Sensitive to genotoxic stress-A. Tanaka-2009 72806,64677 ATR interacting protein (Protein dimerization),Protein dimerization protein dimerization activity [GO:0046983]; cell cycle arrest [GO:0007050]; cellular response to DNA damage stimulus [GO:0006974] locus:2171993; AT5G45610 NA NA NA NA NA NA NA NA ENOG411DZMB Q9STP7,A0A1P8B806 Q9STP7_ARATH,A0A1P8B806_ARATH Calcium-binding EF hand family protein (Putative calcium binding protein),Calcium-binding EF hand family protein 40913,36813 Calcium-binding EF hand family protein (Putative calcium binding protein),Calcium-binding EF hand family protein calcium ion binding [GO:0005509] locus:2137385; AT4G27790 Calcium-binding EF hand family protein NA NA NA NA NA NA NA ENOG411DZMM Q8VZ74 ERA_ARATH GTPase ERA-like, chloroplastic (GTP-binding protein Era-like) FUNCTION: Nuclear genome-encoded probable GTPase involved in ribosome biogenesis in chloroplasts. Plays a role in 16S rRNA maturation in plastids and may contribute to the assembly of the small (30S) ribosomal subunit. {ECO:0000250|UniProtKB:K7UTH7}. 48931 GTPase ERA-like, chloroplastic (GTP-binding protein Era-like) chloroplast [GO:0009507]; chloroplast nucleoid [GO:0042644]; GTP binding [GO:0005525]; RNA binding [GO:0003723]; ribosome biogenesis [GO:0042254] locus:2154915; AT5G66470 GTP-binding protein era NA NA NA NA NA NA NA ENOG411DZMI IPCS1,IPCS2 Q9M325,Q9SH93 IPCS1_ARATH,IPCS2_ARATH Phosphatidylinositol:ceramide inositolphosphotransferase 1 (EC 2.7.8.-) (Inositol-phosphorylceramide synthase 1) (AtIPCS1) (IPC synthase 1) (Protein ERH1-like2) (Sphingolipid synthase 1),Phosphatidylinositol:ceramide inositolphosphotransferase 2 (EC 2.7.8.-) (Inositol-phosphorylceramide synthase 2) (AtIPCS2) (IPC synthase 2) (Protein ENHANCING RPW8-MEDIATED HR-LIKE CELL DEATH 1) (Sphingolipid synthase 2) DISRUPTION PHENOTYPE: Constitutive RPW8-mediated HR-like cell death characterized by salicylic acid (SA) accumulation, enhanced transcription of RPW8 and RPW8-dependent spontaneous HR-like cell death (SHL) in leaf tissues. Reduced plant stature. Sphingolipid (e.g. ceramides and hydroxyceramides) accumulation associated with a reduced inositol-phosphorylceramide synthase (IPCS) activity. {ECO:0000269|PubMed:19001565}. FUNCTION: Catalyzes the transfer of the phosphorylinositol group from phosphatidylinositol (PI) to phytoceramide, an essential step in sphingolipid biosynthesis. {ECO:0000269|PubMed:20309609}.,FUNCTION: Catalyzes the transfer of the phosphorylinositol group from phosphatidylinositol (PI) to phytoceramide, an essential step in sphingolipid biosynthesis. May play an important role in modulating plant programmed cell death (PCD) associated with defense (e.g. toward Golovinomyces cichoracearum) by promoting sphingolipid metabolism and thus regulating ceramide accumulation. {ECO:0000269|PubMed:19001565, ECO:0000269|PubMed:20309609}. ARA:GQT-727-MONOMER;,ARA:AT2G37940-MONOMER;MetaCyc:AT2G37940-MONOMER; 2.7.8.- 34857,34996 Phosphatidylinositol:ceramide inositolphosphotransferase 1 (EC 2.7.8.-) (Inositol-phosphorylceramide synthase 1) (AtIPCS1) (IPC synthase 1) (Protein ERH1-like2) (Sphingolipid synthase 1),Phosphatidylinositol:ceramide inositolphosphotransferase 2 (EC 2.7.8.-) (Inositol-phosphorylceramide synthase 2) (AtIPCS2) (IPC synthase 2) (Protein ENHANCING RPW8-MEDIATED HR-LIKE CELL DEATH 1) (Sphingolipid synthase 2) integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; inositol phosphoceramide synthase activity [GO:0045140]; sphingolipid biosynthetic process [GO:0030148],integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; inositol phosphoceramide synthase activity [GO:0045140]; defense response [GO:0006952]; sphingolipid biosynthetic process [GO:0030148] TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:20309609}.,TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:19001565, ECO:0000269|PubMed:20309609}. locus:2084455;,locus:2065629; AT3G54020,AT2G37940 Inherit from KOG: sphingomyelin synthase NA NA NA NA NA NA NA ENOG411DZMH SYP81 P59277,A0A1P8AWG1 SYP81_ARATH,A0A1P8AWG1_ARATH Syntaxin-81 (AtSYP81),Syntaxin of plants 81 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000305}. 35573,28231 Syntaxin-81 (AtSYP81),Syntaxin of plants 81 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] locus:2017632; AT1G51740 syntaxin OSJNBa0074L08.20 protein (OSJNBa0081C01.8 protein) (Os04g0530400 protein) (cDNA clone:J013108A04, full insert sequence),Os12g0154400 protein Q7X7I8,B9GBY2 Q7X7I8_ORYSJ,B9GBY2_ORYSJ Os04g0530400 Os04g0530400 OsJ_15559 OSJNBa0074L08.20 OSJNBa0081C01.8 OSNPB_040530400,Os12g0154400 OsJ_35261 OSNPB_120154400 ENOG411DZMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein VERNALIZATION INSENSITIVE Os08g0220600 protein (Putative coiled-coil protein) (cDNA clone:001-115-H08, full insert sequence),Os08g0220600 protein (Fragment) Q6Z2D6,A0A0N7KPG7,A0A0P0XD38 Q6Z2D6_ORYSJ,A0A0N7KPG7_ORYSJ,A0A0P0XD38_ORYSJ Os08g0220600 Os08g0220600 OsJ_26450 OSNPB_080220600 P0691F12.23,Os08g0220600 OSNPB_080220600 ENOG411DZMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7) Q9LDL0 Q9LDL0_ORYSJ prx4 Os01g0270300 OsJ_01244 OSNPB_010270300 P0667A10.22 P0693B08.2 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411E1TA D6PKL3 Q05999 D6KL3_ARATH Serine/threonine-protein kinase D6PKL3 (EC 2.7.11.1) (D6 protein kinase-like 3) (Serine/threonine-protein kinase AtPK7) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the quadruple d6pk, d6pkl1, d6pkl2 and d6pkl3 mutants are deficient in lateral root formation and mildly agravitropic, have fused or single cotyledons and narrow and twisted leaves, form few axillary shoots, are almost infertile and impaired in phototropic hypocotyl bending when exposed to lateral white light. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. Quadruple mutant displays defects in many aspects of development. Defects include:abnormal leaves leaves are narrow and twisted; reduced number of axillary shoots and reduced fertility. In addition mutants also display single or fused cotyldons reduced number of lateral roots and are mildy agravitropic. FUNCTION: Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation. D6PK-mediated PIN phosphorylation promotes auxin transport in the hypocotyl and this is a prerequisite for PHOT1-dependent hypocotyl bending. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. 2.7.11.1 64286 Serine/threonine-protein kinase D6PKL3 (EC 2.7.11.1) (D6 protein kinase-like 3) (Serine/threonine-protein kinase AtPK7) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed predominantly in root tissue with lower levels found in leaf, stem, seed and flower. locus:2091443; AT3G27580 protein kinase PVPK-1-like NA NA NA NA NA NA NA ENOG411E1TF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein kinase Os04g0419900 protein (Fragment),OSJNBa0028I23.12 protein (Os04g0420900 protein),D-mannose binding lectin family protein (Os10g0342300 protein) (Putative S-receptor kinase),Os04g0420900 protein (Fragment) Q0JD95,Q7XMH0,Q8LMB0,A0A0N7KJ20 Q0JD95_ORYSJ,Q7XMH0_ORYSJ,Q8LMB0_ORYSJ,A0A0N7KJ20_ORYSJ Os04g0419900 Os04g0419900 OSNPB_040419900,Os04g0420900 OsJ_14794 OSJNBa0028I23.12 OSNPB_040420900,LOC_Os10g20160 Os10g0342300 OsJ_31146 OSJNBa0035F15.13 OSNPB_100342300,Os04g0420900 OSNPB_040420900 ENOG411E1TN MQL5.17 Q93VG8,Q9LVS8,F4JP67 PPDEX_ARATH,Q9LVS8_ARATH,F4JP67_ARATH DeSI-like protein At4g17486 (EC 3.4.-.-),At5g47310 (PPPDE putative thiol peptidase family protein) (Similarity to EREBP-4) (Uncharacterized protein At5g47310),PPPDE putative thiol peptidase family protein 3.4.-.- 25349,27412,22706 DeSI-like protein At4g17486 (EC 3.4.-.-),At5g47310 (PPPDE putative thiol peptidase family protein) (Similarity to EREBP-4) (Uncharacterized protein At5g47310),PPPDE putative thiol peptidase family protein peptidase activity [GO:0008233] locus:2129096;,locus:2171524; AT4G17486,AT5G47310 UPF0326 protein Os04g0548000 protein (cDNA clone:001-124-C04, full insert sequence) (cDNA clone:J033015I19, full insert sequence),Os03g0100900 protein (UPF0326 protein CGI-146, putative, expressed) (cDNA clone:001-039-E05, full insert sequence) (cDNA clone:J033125P20, full insert sequence) Q0JB96,Q10T56 Q0JB96_ORYSJ,Q10T56_ORYSJ Os04g0548000 Os04g0548000 OSNPB_040548000,Os03g0100900 LOC_Os03g01130 Os03g0100900 OsJ_09052 OSNPB_030100900 ENOG411E1TQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA targeting protein for Xklp2 Os03g0799100 protein (Targeting protein for Xklp2 containing protein, expressed) (cDNA clone:001-020-B08, full insert sequence) (cDNA clone:J033107G17, full insert sequence),Os07g0185432 protein Q851Q0,A0A0P0X365 Q851Q0_ORYSJ,A0A0P0X365_ORYSJ OSJNBa0052F07.23 LOC_Os03g58480 Os03g0799100 OsJ_12969 OSNPB_030799100,Os07g0185432 OSNPB_070185432 ENOG411E1TU F23N14_50 Q8H1H9,Q9M2B9 AMO_ARATH,Q9M2B9_ARATH Primary amine oxidase (EC 1.4.3.21) (Amine oxidase [copper-containing]),Amine oxidase (EC 1.4.3.-) ARA:AT1G62810-MONOMER;,ARA:AT3G43670-MONOMER; R-ATH-211945;R-ATH-6798695; 1.4.3.21; 1.4.3.21,1.4.3.- 80138,77533 Primary amine oxidase (EC 1.4.3.21) (Amine oxidase [copper-containing]),Amine oxidase (EC 1.4.3.-) aliphatic-amine oxidase activity [GO:0052595]; aminoacetone:oxygen oxidoreductase(deaminating) activity [GO:0052594]; copper ion binding [GO:0005507]; phenethylamine:oxygen oxidoreductase (deaminating) activity [GO:0052596]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; tryptamine:oxygen oxidoreductase (deaminating) activity [GO:0052593]; abscisic acid-activated signaling pathway [GO:0009738]; amine metabolic process [GO:0009308]; nitric oxide biosynthetic process [GO:0006809],copper ion binding [GO:0005507]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; amine metabolic process [GO:0009308] locus:2026267;,locus:2080173; AT1G62810,AT3G43670 Copper amine oxidase N2 domain NA NA NA NA NA NA NA ENOG411ECWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411DXU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2-aminoethanethiol dioxygenase Os05g0592300 protein (cDNA clone:J013155I19, full insert sequence),Os05g0592300 protein (Fragment) Q0DFG5,A0A0P0WQP3 Q0DFG5_ORYSJ,A0A0P0WQP3_ORYSJ Os05g0592300 Os05g0592300 OsJ_19756 OSNPB_050592300,Os05g0592300 OSNPB_050592300 ENOG411DT49 Q8RWZ0 Q8RWZ0_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At1g69060) 71386 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At1g69060) vacuolar membrane [GO:0005774] locus:2033233; AT1G69060 DnaJ domain Expressed protein (Os03g0752700 protein) Q7Y025 Q7Y025_ORYSJ OJ1112_G08.12 OSJNBa0047E24.3 LOC_Os03g54150 Os03g0752700 OSNPB_030752700 ENOG411DXP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ClpB_D2-small NA NA NA NA NA NA NA ENOG411E1KE PAP14,ORG1 Q9LV04,A0A1R7T381 PAP14_ARATH,A0A1R7T381_ARATH Probable plastid-lipid-associated protein 14, chloroplastic (AtPap14) (Fibrillin-11) (OBP3-responsive protein 1),OBP3-responsive protein 1 FUNCTION: Directly regulated by DOF3.6/OBP3; unknown function. {ECO:0000269|PubMed:12887587}. 75766,51826 Probable plastid-lipid-associated protein 14, chloroplastic (AtPap14) (Fibrillin-11) (OBP3-responsive protein 1),OBP3-responsive protein 1 chloroplast [GO:0009507]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468]; regulation of gene expression [GO:0010468]; regulation of mitotic cell cycle [GO:0007346],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:21571574}. locus:2178456; AT5G53450 STYKc Os01g0655500 protein (cDNA clone:J013158F22, full insert sequence),Os01g0655500 protein (Fragment) Q5SN79,A0A0N7KDF8 Q5SN79_ORYSJ,A0A0N7KDF8_ORYSJ Os01g0655500 OSJNBa0049H05.23 OSNPB_010655500,Os01g0655500 OSNPB_010655500 ENOG411DT4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0438500 protein A0A0P0XN56 A0A0P0XN56_ORYSJ Os09g0438500 OSNPB_090438500 ENOG411DRGY Q9SIE3,Q9LX13 Q9SIE3_ARATH,Q9LX13_ARATH At2g22230/T26C19.11 (Putative beta-hydroxyacyl-ACP dehydratase) (Thioesterase superfamily protein),(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase-like protein (At5g10160) (Thioesterase superfamily protein) (Uncharacterized protein At5g10160) ARA:AT2G22230-MONOMER;,ARA:GQT-1803-MONOMER; 24242,24123 At2g22230/T26C19.11 (Putative beta-hydroxyacyl-ACP dehydratase) (Thioesterase superfamily protein),(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase-like protein (At5g10160) (Thioesterase superfamily protein) (Uncharacterized protein At5g10160) cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [GO:0019171]; crotonoyl-[acyl-carrier-protein] hydratase activity [GO:0047450]; defense response to fungus, incompatible interaction [GO:0009817]; fatty acid biosynthetic process [GO:0006633],cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; membrane [GO:0016020]; hydro-lyase activity [GO:0016836]; fatty acid biosynthetic process [GO:0006633] locus:2060374;,locus:2184143; AT2G22230,AT5G10160 dehydratase Os05g0435700 protein (Putative beta-hydroxyacyl-ACP dehydratase) (cDNA clone:J023027I11, full insert sequence),Os08g0225000 protein Q6I5L0,A0A0P0XD59 Q6I5L0_ORYSJ,A0A0P0XD59_ORYSJ Os05g0435700 OsJ_18664 OSJNBb0088F07.9 OSNPB_050435700,Os08g0225000 OSNPB_080225000 ENOG411DSDU PLGG1 Q9FVQ4 PLGG1_ARATH Plastidal glycolate/glycerate translocator 1, chloroplastic (Bacterial membrane protein LrgB-like protein) (AtLrgB) DISRUPTION PHENOTYPE: Interveinal chlorotic and premature necrotic leaves. Bleached leaf phenotype when grown under ambient air, but normal growth under CO(2)-enriched air. {ECO:0000269|PubMed:21916894, ECO:0000269|PubMed:23382251}. FUNCTION: Glycolate/glycerate transporter required for photorespiration. {ECO:0000269|PubMed:21916894, ECO:0000269|PubMed:22180599, ECO:0000269|PubMed:23382251}. 54017 Plastidal glycolate/glycerate translocator 1, chloroplastic (Bacterial membrane protein LrgB-like protein) (AtLrgB) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerate transmembrane transporter activity [GO:1901974]; glycolate transmembrane transporter activity [GO:0043879]; chloroplast organization [GO:0009658]; glycerate transmembrane transport [GO:1901975]; glycolate transmembrane transport [GO:0097339]; photorespiration [GO:0009853] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, but not in roots. {ECO:0000269|PubMed:21916894, ECO:0000269|PubMed:22180599}. locus:2031745; AT1G32080 LrgB-like family LrgB-like family protein, expressed (Os10g0578800 protein) (cDNA clone:J013046E02, full insert sequence),Os01g0511600 protein (Fragment) Q7XBT7,A0A0P0V371 Q7XBT7_ORYSJ,A0A0P0V371_ORYSJ LOC_Os10g42780 Os10g0578800 OSJNBa0056G17.2 OSNPB_100578800,Os01g0511600 OSNPB_010511600 ENOG411DSDA NRPA1 Q9SVY0,A0A1I9LME9 NRPA1_ARATH,A0A1I9LME9_ARATH DNA-directed RNA polymerase I subunit 1 (DNA-directed RNA polymerase I subunit RPA1) (DNA polymerase I subunit A1) (EC 2.7.7.6) (Nuclear RNA polymerase A1),DNA-directed RNA polymerase subunit (EC 2.7.7.6) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Forms the polymerase active center together with the second largest subunit. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol I. A bridging helix emanates from NRPA1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol I by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. {ECO:0000250|UniProtKB:P10964}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU004279}. Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 2.7.7.6 187576,186044 DNA-directed RNA polymerase I subunit 1 (DNA-directed RNA polymerase I subunit RPA1) (DNA polymerase I subunit A1) (EC 2.7.7.6) (Nuclear RNA polymerase A1),DNA-directed RNA polymerase subunit (EC 2.7.7.6) DNA-directed RNA polymerase I complex [GO:0005736]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; zinc ion binding [GO:0008270]; ribosome biogenesis [GO:0042254]; transcription from RNA polymerase I promoter [GO:0006360],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; zinc ion binding [GO:0008270]; transcription, DNA-templated [GO:0006351] locus:2076661; AT3G57660 DNA-directed RNA Polymerase Os06g0612200 protein Q0DAZ6 Q0DAZ6_ORYSJ Os06g0612200 Os06g0612200 OSNPB_060612200 ENOG411DSDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF Os09g0562600 protein Q0IZL6 Q0IZL6_ORYSJ Os09g0562600 OSNPB_090562600 ENOG411EH82 Q9LTK7 Q9LTK7_ARATH Uncharacterized protein 18877 Uncharacterized protein locus:2145076; AT5G52130 Inherit from KOG: finger protein NA NA NA NA NA NA NA ENOG411DXAD PCMP-E31 Q9LUC2 PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730 72711 Pentatricopeptide repeat-containing protein At3g14730 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2089591; AT3G14730 Pentatricopeptide repeat-containing protein Os01g0818200 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q94DV3 Q94DV3_ORYSJ P0454H12.27 Os01g0818200 OSNPB_010818200 ENOG411EBM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FtsZ family C-terminal domain NA NA NA NA NA NA NA ENOG411EBM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor Os09g0118666 protein,Os09g0116050 protein,Os03g0225400 protein,Os03g0225450 protein A0A0N7KQC9,A0A0P0XJN0,A0A0P0VUX0,A0A0P0VUU8 A0A0N7KQC9_ORYSJ,A0A0P0XJN0_ORYSJ,A0A0P0VUX0_ORYSJ,A0A0P0VUU8_ORYSJ Os09g0118666 OSNPB_090118666,Os09g0116050 OSNPB_090116050,Os03g0225400 OSNPB_030225400,Os03g0225450 OSNPB_030225450 ENOG411EBM1 Q9M2I0,Q9C871 MCC25_ARATH,Q9C871_ARATH MATH domain and coiled-coil domain-containing protein At3g58360 (RTM3-like protein At3g58360),TRAF-like family protein (Uncharacterized protein T8E3.3) 34496,19861 MATH domain and coiled-coil domain-containing protein At3g58360 (RTM3-like protein At3g58360),TRAF-like family protein (Uncharacterized protein T8E3.3) locus:2085390;,locus:2197485; AT3G58360,AT1G31380 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EBM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA far-red impaired NA NA NA NA NA NA NA ENOG411EBM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os01g0365300 protein A0A0P0V2L2 A0A0P0V2L2_ORYSJ Os01g0365300 OSNPB_010365300 ENOG411EBM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitin recognition protein Os04g0493600 protein Q0JC38 Q0JC38_ORYSJ Os04g0493600 Os04g0493600 OSNPB_040493600 ENOG411EBM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411EBM8 PAB4 O22173 PABP4_ARATH Polyadenylate-binding protein 4 (PABP-4) (Poly(A)-binding protein 4) DISRUPTION PHENOTYPE: Pab2 and pab4 double mutants show significant growth and development defects and more resistance to Turnip mosaic virus (TuMV). {ECO:0000269|PubMed:18753244}. FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation (By similarity). During infection with potyvirus TuMV, acts as a potential integral component of the viral replicase complex that could play an important role in the regulation of potyviral RNA-dependent RNA polymerase (RdRp) (By similarity). {ECO:0000250}. MISCELLANEOUS: A.thaliana contains 8 PABP genes. R-ATH-156827;R-ATH-975956;R-ATH-975957; 71653 Polyadenylate-binding protein 4 (PABP-4) (Poly(A)-binding protein 4) cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; regulation of translation [GO:0006417]; response to cadmium ion [GO:0046686]; viral process [GO:0016032] locus:2058573; AT2G23350 binding protein 4 NA NA NA NA NA NA NA ENOG411EBM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EBMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EBMC PEX11D,PEX11E O80845,Q84JW1 PX11D_ARATH,PX11E_ARATH Peroxisomal membrane protein 11D (Peroxin-11D) (AtPEX11d),Peroxisomal membrane protein 11E (Peroxin-11E) (AtPEX11e) FUNCTION: Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199, ECO:0000269|PubMed:18539750}.,FUNCTION: Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}. MISCELLANEOUS: Can complement the yeast pex11 null mutant. 25944,25512 Peroxisomal membrane protein 11D (Peroxin-11D) (AtPEX11d),Peroxisomal membrane protein 11E (Peroxin-11E) (AtPEX11e) chloroplast [GO:0009507]; integral component of peroxisomal membrane [GO:0005779]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; identical protein binding [GO:0042802]; peroxisome fission [GO:0016559]; peroxisome organization [GO:0007031]; regulation of peroxisome size [GO:0044375],integral component of peroxisomal membrane [GO:0005779]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; identical protein binding [GO:0042802]; circadian rhythm [GO:0007623]; peroxisome fission [GO:0016559]; peroxisome organization [GO:0007031]; regulation of peroxisome size [GO:0044375] TISSUE SPECIFICITY: Expressed in developing siliques. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}.,TISSUE SPECIFICITY: Expressed in leaves and developing siliques. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}. locus:2050694;,locus:2101012; AT2G45740,AT3G61070 Peroxisomal biogenesis factor 11 (PEX11) NA NA NA NA NA NA NA ENOG411EBMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os08g0205150 protein (Putative MLA1),Os08g0205100 protein (Fragment) Q6ZCF9,A0A0N7KPF7 Q6ZCF9_ORYSJ,A0A0N7KPF7_ORYSJ Os08g0205150 Os08g0205150 OsJ_26402 OSNPB_080205150 P0486F07.28,Os08g0205100 OSNPB_080205100 ENOG411EBMG Q0WVR3,A0A1P8B2K0,A0A1P8B2H7,A0A1P8B2H9 Q0WVR3_ARATH,A0A1P8B2K0_ARATH,A0A1P8B2H7_ARATH,A0A1P8B2H9_ARATH Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At2g25420),Transducin family protein / WD-40 repeat family protein 83160,84004,79190,78346 Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At2g25420),Transducin family protein / WD-40 repeat family protein locus:2040100; AT2G25420 LisH NA NA NA NA NA NA NA ENOG411EBMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG NA NA NA NA NA NA NA ENOG411EBMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region Os02g0189800 protein Q0E380 Q0E380_ORYSJ Os02g0189800 Os02g0189800 OsJ_05692 OSNPB_020189800 ENOG411EBMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EBMS APUM20,APUM17,APUM18,APUM22,APUM26,APUM21,APUM16,APUM19,PUM17 Q9XI17,Q9C8B8,Q9LVG3,Q9LNI2,Q9FGE7,Q9LXC5,Q9FIE9,Q9LSS8,A0A1P8AVF0 PUM20_ARATH,PUM17_ARATH,PUM18_ARATH,PUM22_ARATH,PUM26_ARATH,PUM21_ARATH,PUM16_ARATH,PUM19_ARATH,A0A1P8AVF0_ARATH Putative pumilio homolog 20 (APUM-20) (AtPUM20),Putative pumilio homolog 17 (APUM-17) (AtPUM17),Pumilio homolog 18 (APUM-18) (AtPUM18),Putative pumilio homolog 22 (APUM-22) (AtPUM22),Pumilio homolog 26 (APUM-26) (AtPUM26),Putative pumilio homolog 21 (APUM-21) (AtPUM21),Putative pumilio homolog 16 (APUM-16) (AtPUM16),Putative pumilio homolog 19 (APUM-19) (AtPUM19),Pumilio 17 FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 38112,38511,36838,41255,21009,58776,37977,37063,29858 Putative pumilio homolog 20 (APUM-20) (AtPUM20),Putative pumilio homolog 17 (APUM-17) (AtPUM17),Pumilio homolog 18 (APUM-18) (AtPUM18),Putative pumilio homolog 22 (APUM-22) (AtPUM22),Pumilio homolog 26 (APUM-26) (AtPUM26),Putative pumilio homolog 21 (APUM-21) (AtPUM21),Putative pumilio homolog 16 (APUM-16) (AtPUM16),Putative pumilio homolog 19 (APUM-19) (AtPUM19),Pumilio 17 cytoplasm [GO:0005737]; RNA binding [GO:0003723]; regulation of translation [GO:0006417],integral component of membrane [GO:0016021]; RNA binding [GO:0003723] locus:2164165;,locus:2035312;,locus:2179396;,locus:2144711;,locus:2168529;,locus:2144010; AT1G21620,AT1G35850,AT5G60110,AT1G01410,AT5G64490,AT5G09610,AT5G59280,AT5G60180 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs (By similarity) NA NA NA NA NA NA NA ENOG411EBMP RKD2 Q9CA66 RKD2_ARATH Protein RKD2 (AtRKD2) (RWP-RK domain-containing protein 2) FUNCTION: Putative transcription factor. {ECO:0000250}. 33888 Protein RKD2 (AtRKD2) (RWP-RK domain-containing protein 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2019175; AT1G74480 RWP-RK domain-containing protein NA NA NA NA NA NA NA ENOG411EBMX F7K15_20 Q9LXL7,Q9SVP4 Q9LXL7_ARATH,Q9SVP4_ARATH Uncharacterized protein F7K15_20,Uncharacterized protein AT4g13680 (Uncharacterized protein F18A5.70) 14969,39860 Uncharacterized protein F7K15_20,Uncharacterized protein AT4g13680 (Uncharacterized protein F18A5.70) locus:2084736;,locus:2119490; AT3G43170,AT4G13680 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E809 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0517000 protein (cDNA clone:J013116I04, full insert sequence) Q0J0C4 Q0J0C4_ORYSJ Os09g0517000 Os09g0517000 OsJ_30020 OSNPB_090517000 ENOG411E808 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E807 Q8VZ65 Q8VZ65_ARATH Uncharacterized protein At1g67785 7534 Uncharacterized protein At1g67785 mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739] locus:504956324; AT1G67785 NA Os01g0908400 protein (cDNA clone:001-109-D02, full insert sequence) (cDNA clone:J023136B12, full insert sequence) (p0497A05.16 protein) Q8L416 Q8L416_ORYSJ P0497A05.16 Os01g0908400 B1417F08.34 OsJ_04477 OSNPB_010908400 P0456E05.7 ENOG411E806 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor Expressed protein (Os10g0574700 protein) (cDNA, clone: J065006H13, full insert sequence) Q336P6 Q336P6_ORYSJ Os10g0574700 LOC_Os10g42410 Os10g0574700 OsJ_32564 OSJNBa0003O19.3 OSNPB_100574700 ENOG411E805 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os12g0172400 protein (Fragment) A0A0P0Y7J0 A0A0P0Y7J0_ORYSJ Os12g0172400 OSNPB_120172400 ENOG411E804 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0496100 protein Q6Z5C4 Q6Z5C4_ORYSJ B1142B04.28 Os08g0496100 OSNPB_080496100 ENOG411E803 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0818900 protein (cDNA clone:002-135-G02, full insert sequence) Q6K9R5 Q6K9R5_ORYSJ Os02g0818900 OJ1202_E07.12 OSNPB_020818900 ENOG411E802 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0771700 protein B9ET87 B9ET87_ORYSJ Os01g0771700 OsJ_03616 OSNPB_010771700 ENOG411E801 Q5XV49,Q1G3N4 Q5XV49_ARATH,Q1G3N4_ARATH Cell wall RBR3-like protein,TPRXL 14272,16102 Cell wall RBR3-like protein,TPRXL locus:504954988;,locus:1009023254; AT5G05965,AT3G55646 NA NA NA NA NA NA NA NA ENOG411E800 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0532800 protein (cDNA clone:002-175-B07, full insert sequence) Q6I5H6 Q6I5H6_ORYSJ Os05g0532800 OSJNBa0053E05.10 OSNPB_050532800 ENOG411E80Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial ATP synthase epsilon chain NA NA NA NA NA NA NA ENOG411E80Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E80W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0551500 protein (cDNA clone:J013040K01, full insert sequence) Q5Z938 Q5Z938_ORYSJ Os06g0551500 Os06g0551500 OsJ_21649 OSNPB_060551500 P0659D09.46 ENOG411E80V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor NA NA NA NA NA NA NA ENOG411E80T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0565701 protein B9FI57 B9FI57_ORYSJ Os05g0565701 Os05g0565701 OsJ_19567 OSNPB_050565701 ENOG411E80S F19F18.190 Q9SZG2 Q9SZG2_ARATH At4g37700 (Uncharacterized protein At4g37700) (Uncharacterized protein F19F18.190) 16460 At4g37700 (Uncharacterized protein At4g37700) (Uncharacterized protein F19F18.190) locus:2120150; AT4G37700 NA NA NA NA NA NA NA NA ENOG411E80Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E80P Q9LUL9 Q9LUL9_ARATH At3g14280 (LL-diaminopimelate aminotransferase) (Uncharacterized protein At3g14280) 16149 At3g14280 (LL-diaminopimelate aminotransferase) (Uncharacterized protein At3g14280) transaminase activity [GO:0008483] locus:2091060; AT3G14280 NA NA NA NA NA NA NA NA ENOG411E80M Q3E9N0 Q3E9N0_ARATH Josephin-like protein 15006 Josephin-like protein locus:504955018; AT5G01225 NA NA NA NA NA NA NA NA ENOG411E80K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr OSJNBa0058K23.20 protein (Os04g0620600 protein) (cDNA clone:J023142G04, full insert sequence) Q7XS34 Q7XS34_ORYSJ Os04g0620600 OSJNBa0058K23.20 OSNPB_040620600 ENOG411E80J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0686900 protein A0A0P0X0H5 A0A0P0X0H5_ORYSJ Os06g0686900 OSNPB_060686900 ENOG411E80I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0193732 protein Q7F8R7 Q7F8R7_ORYSJ P0437H03.125 Os02g0193732 OSNPB_020193732 ENOG411E80G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E80F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane adaptor Erv26 NA NA NA NA NA NA NA ENOG411E80C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E80B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411E80A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411DZQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ubox domain-containing protein Armadillo/beta-catenin-like repeat family protein, expressed (Os11g0515000 protein) Q2R3K8 Q2R3K8_ORYSJ Os11g0515000 LOC_Os11g31590 Os11g0515000 OSNPB_110515000 ENOG411DY0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0735800 protein (Fragment) Q0DXS6 Q0DXS6_ORYSJ Os02g0735800 Os02g0735800 OSNPB_020735800 ENOG411EGFZ GG1 Q9FDX9 GG1_ARATH Guanine nucleotide-binding protein subunit gamma 1 (Ggamma-subunit 1) (Heterotrimeric G protein gamma-subunit 1) (AtAGG1) DISRUPTION PHENOTYPE: Enhanced susceptibility to Alternaria brassicicola, Plectosphaerella cucumerina and Fusarium oxysporum associated with a disturbed expression of genes involved in cell wall metabolism (e.g. lower xylose content in cell walls). Reduced induction of the plant defensin gene PDF1.2, and decreased sensitivity to methyl jasmonate (MeJA). Hypersensitive to auxin-mediated induction of lateral roots, within the central cylinder, attenuating acropetally transported auxin signaling. Enhanced sensitivity to glucose and mannitol during seed germination. Abnormal roots architecture. {ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:20862254, ECO:0000269|PubMed:21980142, ECO:0000269|PubMed:22209167}. Abnormal root architecture; Increased basipetal auxin transport-A. Jones-2009 FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Involved in the abscisic acid (ABA) and ethylene signaling pathways. Regulates acropetal transport of auxin (IAA) in roots and hypocotyls, and thus modulates root architecture (e.g. lateral root formation). The heterotrimeric G-protein controls defense responses to necrotrophic and vascular fungi probably by modulating cell wall-related genes expression; involved in resistance to fungal pathogens such as Alternaria brassicicola, Plectosphaerella cucumerina and Fusarium oxysporum. {ECO:0000269|PubMed:17383830, ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:20862254, ECO:0000269|PubMed:21980142, ECO:0000269|PubMed:22209167}. 10947 Guanine nucleotide-binding protein subunit gamma 1 (Ggamma-subunit 1) (Heterotrimeric G protein gamma-subunit 1) (AtAGG1) cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; heterotrimeric G-protein complex [GO:0005834]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; signal transducer activity [GO:0004871]; acropetal auxin transport [GO:0010541]; defense response to fungus, incompatible interaction [GO:0009817]; G-protein coupled receptor signaling pathway [GO:0007186]; lateral root development [GO:0048527]; protein palmitoylation [GO:0018345]; protein prenylation [GO:0018342]; seed germination [GO:0009845] DEVELOPMENTAL STAGE: In seedlings, first observed at the hypocotyl/root junction but later confined to the hypocotyl. In flowers, restricted to the stigma of mature flowers. In siliques, confined to the abscission zone. {ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:18441222}. TISSUE SPECIFICITY: Mostly expressed in seedlings (especially at the hypocotyl/root junction), young cauline leaves, open flowers, and floral stems, and, to a lower extent, in roots (restricted to the stele), rosette leaves (restricted to veins), siliques, and unopened floral buds. Also present in hydathods. {ECO:0000269|PubMed:11121078, ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:18441222}. locus:2087398; AT3G63420 NA NA NA NA NA NA NA NA ENOG411EGFX Q9C7P1,Q9C7P4,A0A1P8AM37 C3H10_ARATH,C3H9_ARATH,A0A1P8AM37_ARATH Putative zinc finger CCCH domain-containing protein 10 (AtC3H10),Putative zinc finger CCCH domain-containing protein 9 (AtC3H9),Zinc finger C-x8-C-x5-C-x3-H type family protein 45579,39646,36891 Putative zinc finger CCCH domain-containing protein 10 (AtC3H10),Putative zinc finger CCCH domain-containing protein 9 (AtC3H9),Zinc finger C-x8-C-x5-C-x3-H type family protein DNA binding [GO:0003677]; metal ion binding [GO:0046872],metal ion binding [GO:0046872] locus:2013603;,locus:2013763; AT1G29600,AT1G29570 zinc finger NA NA NA NA NA NA NA ENOG411EGFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0298300 protein,Os06g0361200 protein B9GCS2,A0A0P0WWI6 B9GCS2_ORYSJ,A0A0P0WWI6_ORYSJ Os12g0298300 OsJ_35833 OSNPB_120298300,Os06g0361200 OSNPB_060361200 ENOG411EGFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: domain protein NA NA NA NA NA NA NA ENOG411EGFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0677100 protein B9F1M5 B9F1M5_ORYSJ Os02g0677100 OsJ_07914 OSNPB_020677100 ENOG411EGFR MUG13.9 Q9FF69 Q9FF69_ARATH Cysteine proteinases superfamily protein 32877 Cysteine proteinases superfamily protein extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2175329; AT5G05050 Papain family cysteine protease NA NA NA NA NA NA NA ENOG411EGFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0114300 protein A3AQ94 A3AQ94_ORYSJ Os04g0114300 OsJ_13558 OSNPB_040114300 ENOG411EGFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGFQ JAL24,JAL25 Q84X07,O22829 JAL24_ARATH,JAL25_ARATH Jacalin-related lectin 24,Jacalin-related lectin 25 25949,35585 Jacalin-related lectin 24,Jacalin-related lectin 25 carbohydrate binding [GO:0030246] locus:2044004;,locus:2043984; AT2G43730,AT2G43740 Jacalin NA NA NA NA NA NA NA ENOG411EGFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411EGFK T11I11.30 Q9SW55 Q9SW55_ARATH At4g34790 (SAUR-like auxin-responsive protein family) (Uncharacterized protein AT4g34790) (Uncharacterized protein T11I11.30) 12213 At4g34790 (SAUR-like auxin-responsive protein family) (Uncharacterized protein AT4g34790) (Uncharacterized protein T11I11.30) response to auxin [GO:0009733] locus:2116875; AT4G34790 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EGFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411EGFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial fructose-16-bisphosphatase glpX-encoded NA NA NA NA NA NA NA ENOG411EGFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NA NA NA NA NA NA NA ENOG411EGFG A0A1P8B3I4 A0A1P8B3I4_ARATH Splicing factor 3B subunit 5/RDS3 complex subunit 10 11715 Splicing factor 3B subunit 5/RDS3 complex subunit 10 Splicing factor 3B subunit 10 (SF3b10) NA NA NA NA NA NA NA ENOG411EGFD Q8RUZ7 Q8RUZ7_ARATH C3HC4-type RING finger protein (Uncharacterized protein At2g25565) 23298 C3HC4-type RING finger protein (Uncharacterized protein At2g25565) locus:2827481; AT2G25565 Inherit from KOG: finger protein NA NA NA NA NA NA NA ENOG411EGFB Q9SIR8 Q9SIR8_ARATH At2g25250 (Serine/arginine repetitive matrix-like protein) (Uncharacterized protein At2g25250) 17186 At2g25250 (Serine/arginine repetitive matrix-like protein) (Uncharacterized protein At2g25250) locus:2059579; AT2G25250 NA NA NA NA NA NA NA NA ENOG411EGFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGF8 Q56YG1,F4IK16 Q56YG1_ARATH,F4IK16_ARATH Agamous-like MADS-box protein (Uncharacterized protein At2g41440),Agamous-like MADS-box protein 19723,33498 Agamous-like MADS-box protein (Uncharacterized protein At2g41440),Agamous-like MADS-box protein locus:2040242; AT2G41440 NA NA NA NA NA NA NA NA ENOG411EGF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein A0A0P0V296,A0A0P0V282 A0A0P0V296_ORYSJ,A0A0P0V282_ORYSJ Os01g0352400 OSNPB_010352400,Os01g0351500 OSNPB_010351500 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EGF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGF7 SAUR19,SAUR23,SAUR21,SAUR28,SAUR22,SAUR24,SAUR20,SAUR15,SAUR27,SAUR73,SAUR29,SAUR26,SAUR7,SAUR13 Q9FJG1,Q9FJF6,Q9FJF9,Q9SRW0,Q9FJF7,Q9FK62,Q9FJG0,Q41220,Q9SRW1,Q3EBC5,Q9SRV9,Q6NMM4,Q9SKP3,B3H4F0 SAU19_ARATH,SAU23_ARATH,SAU21_ARATH,SAU28_ARATH,SAU22_ARATH,SAU24_ARATH,SAU20_ARATH,SAU15_ARATH,Q9SRW1_ARATH,Q3EBC5_ARATH,Q9SRV9_ARATH,Q6NMM4_ARATH,Q9SKP3_ARATH,B3H4F0_ARATH Auxin-responsive protein SAUR19 (Protein SMALL AUXIN UP RNA 19),Auxin-responsive protein SAUR23 (Protein SMALL AUXIN UP RNA 23),Auxin-responsive protein SAUR21 (Protein SMALL AUXIN UP RNA 21),Auxin-responsive protein SAUR28 (Protein SMALL AUXIN UP RNA 28),Auxin-responsive protein SAUR22 (Protein SMALL AUXIN UP RNA 22),Auxin-responsive protein SAUR24 (Protein SMALL AUXIN UP RNA 24),Auxin-responsive protein SAUR20 (Protein SMALL AUXIN UP RNA 20),Auxin-responsive protein SAUR15 (Protein SMALL AUXIN UP RNA 15) (Protein SMALL AUXIN UP RNA FROM ARABIDOPSIS COLUMBIA 1),At3g03840 (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family),At3g03847 (SAUR-like auxin-responsive protein family),Putative auxin-induced protein (SAUR-like auxin-responsive protein family),At3g03850 (SAUR-like auxin-responsive protein family),At2g21200 (Putative auxin-regulated protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family FUNCTION: Functions as positive effectors of cell expansion through modulation of auxin transport. {ECO:0000269|PubMed:22348445}.,FUNCTION: Functions as positive effectors of cell expansion through modulation of auxin transport. {ECO:0000250|UniProtKB:Q9FJG1}.,FUNCTION: Functions as a positive effector of cell expansion through modulation of auxin transport. {ECO:0000250|UniProtKB:Q9FJG1}. MISCELLANEOUS: Seedlings over-expressing SAUR19 display auxin-related phenotypes. These phenotypes include increased cell expansion, increased hypocotyl and leaf size, defective apical hook maintenance, altered tropic responses and increased basipetal auxin transport in hypocotyls. {ECO:0000269|PubMed:22348445}. 9738,9865,9620,10284,9843,9781,10044,10206,10415,14517,10449,10200,9298,9773 Auxin-responsive protein SAUR19 (Protein SMALL AUXIN UP RNA 19),Auxin-responsive protein SAUR23 (Protein SMALL AUXIN UP RNA 23),Auxin-responsive protein SAUR21 (Protein SMALL AUXIN UP RNA 21),Auxin-responsive protein SAUR28 (Protein SMALL AUXIN UP RNA 28),Auxin-responsive protein SAUR22 (Protein SMALL AUXIN UP RNA 22),Auxin-responsive protein SAUR24 (Protein SMALL AUXIN UP RNA 24),Auxin-responsive protein SAUR20 (Protein SMALL AUXIN UP RNA 20),Auxin-responsive protein SAUR15 (Protein SMALL AUXIN UP RNA 15) (Protein SMALL AUXIN UP RNA FROM ARABIDOPSIS COLUMBIA 1),At3g03840 (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family),At3g03847 (SAUR-like auxin-responsive protein family),Putative auxin-induced protein (SAUR-like auxin-responsive protein family),At3g03850 (SAUR-like auxin-responsive protein family),At2g21200 (Putative auxin-regulated protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family extrinsic component of plasma membrane [GO:0019897]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; positive regulation of cell growth [GO:0030307]; regulation of auxin polar transport [GO:2000012],plasma membrane [GO:0005886]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008],extrinsic component of plasma membrane [GO:0019897]; positive regulation of cell growth [GO:0030307]; regulation of auxin polar transport [GO:2000012]; response to absence of light [GO:0009646]; response to auxin [GO:0009733],plasma membrane [GO:0005886]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008]; response to auxin [GO:0009733],response to auxin [GO:0009733] locus:2161538;,locus:2161518;,locus:2161558;,locus:2079374;,locus:2161573;,locus:2172299;,locus:2161543;,locus:2005542;,locus:2079359;,locus:504955857;,locus:2079389;,locus:2079344;,locus:2047037;,locus:4515103510; AT5G18010,AT5G18060,AT5G18030,AT3G03830,AT5G18050,AT5G18080,AT5G18020,AT4G38850,AT3G03840,AT3G03847,AT3G03820,AT3G03850,AT2G21200,AT4G38825 auxin-responsive protein NA NA NA NA NA NA NA ENOG411EGF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EGF5 Q3ECM9 Q3ECM9_ARATH Transmembrane protein 19593 Transmembrane protein integral component of membrane [GO:0016021] locus:504956245; AT1G56555 NA NA NA NA NA NA NA NA ENOG411EGF2 Q9LUC4 FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710 50145 F-box/FBD/LRR-repeat protein At3g14710 locus:2089566; AT3G14710 LRR-repeat protein NA NA NA NA NA NA NA ENOG411EGF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EGF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE2Q TRM23 F4JSL7 F4JSL7_ARATH Uncharacterized protein 52026 Uncharacterized protein locus:2131794; AT4G25430 NA NA NA NA NA NA NA NA ENOG411EE2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase NA NA NA NA NA NA NA ENOG411EE2S F4JAD2 F4JAD2_ARATH HXXXD-type acyl-transferase family protein 51559 HXXXD-type acyl-transferase family protein N-acyltransferase activity [GO:0016410] locus:2075626; AT3G47170 Transferase family NA NA NA NA NA NA NA ENOG411EE2T RABA1C,RABA1D Q9FK68,Q9SN35 RAA1C_ARATH,RAA1D_ARATH Ras-related protein RABA1c (AtRABA1c),Ras-related protein RABA1d (AtRABA1d) (Ras-related protein Rab11B) (AtRab11B) (Ras-related protein SGBP) (AthSGBP) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-5620916;R-ATH-8873719; 23870 Ras-related protein RABA1c (AtRABA1c),Ras-related protein RABA1d (AtRABA1d) (Ras-related protein Rab11B) (AtRab11B) (Ras-related protein SGBP) (AthSGBP) cytosol [GO:0005829]; endosome [GO:0005768]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031],early endosome membrane [GO:0031901]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; trans-Golgi network membrane [GO:0032588]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in the vesicle-rich apical dome of growing root hairs. {ECO:0000269|PubMed:20841426}. locus:2171943;,locus:2124092; AT5G45750,AT4G18800 RAB NA NA NA NA NA NA NA ENOG411EE2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE2V PME23,PME58 Q8GXA1,Q9FJ21 PME23_ARATH,PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 23 [Includes: Pectinesterase inhibitor 23 (Pectin methylesterase inhibitor 23); Pectinesterase 23 (PE 23) (EC 3.1.1.11) (Pectin methylesterase 23) (AtPME23)],Probable pectinesterase/pectinesterase inhibitor 58 [Includes: Pectinesterase inhibitor 58 (Pectin methylesterase inhibitor 58); Pectinesterase 58 (PE 58) (EC 3.1.1.11) (Pectin methylesterase 58) (AtPME58)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G06830-MONOMER;,ARA:AT5G49180-MONOMER; 3.1.1.11; 3.1.1.11 61886,62799 Probable pectinesterase/pectinesterase inhibitor 23 [Includes: Pectinesterase inhibitor 23 (Pectin methylesterase inhibitor 23); Pectinesterase 23 (PE 23) (EC 3.1.1.11) (Pectin methylesterase 23) (AtPME23)],Probable pectinesterase/pectinesterase inhibitor 58 [Includes: Pectinesterase inhibitor 58 (Pectin methylesterase inhibitor 58); Pectinesterase 58 (PE 58) (EC 3.1.1.11) (Pectin methylesterase 58) (AtPME58)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; pollen tube [GO:0090406]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; mucilage metabolic process involved in seed coat development [GO:0048359]; mucilage pectin biosynthetic process [GO:0048358]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expression restricted to early to mid-stage of silique development. Not found in vegetative stage. Expressed in the micropyle area of the ovule just after fertilization. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in mature pollen grains in the anthers and on the stigma. Found in pollen tubes within the style. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in siliques, but not in flower buds. {ECO:0000269|PubMed:16622707}. locus:2083308;,locus:2155884; AT3G06830,AT5G49180 Pectinesterase NA NA NA NA NA NA NA ENOG411EE2W Q9M155 Q9M155_ARATH AT4G01090 protein (AT4g01090/F2N1_13) (Uncharacterized protein AT4g01090) 79565 AT4G01090 protein (AT4g01090/F2N1_13) (Uncharacterized protein AT4g01090) locus:2125058; AT4G01090 Protein of unknown function (DUF3133) NA NA NA NA NA NA NA ENOG411EE2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH:flavin oxidoreductase / NADH oxidase family NA NA NA NA NA NA NA ENOG411EE2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE2Z SQE5,SQP1 O65404,Q6ID26,A0A1P8BEZ7,A0A1P8BEW9,F4KFQ9 ERG11_ARATH,Q6ID26_ARATH,A0A1P8BEZ7_ARATH,A0A1P8BEW9_ARATH,F4KFQ9_ARATH Squalene epoxidase 5 (AtSQE5) (EC 1.14.14.17) (Squalene monooxygenase 1,1) (SE 1,1),At5g24155 (FAD/NAD(P)-binding oxidoreductase family protein),FAD/NAD(P)-binding oxidoreductase family protein FUNCTION: Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway. {ECO:0000250|UniProtKB:Q9SM02}. MISCELLANEOUS: SEQ4 or SEQ5 are unable to complement seq1 mutants. {ECO:0000305|PubMed:17426032}. PATHWAY: Terpene metabolism; lanosterol biosynthesis; lanosterol from farnesyl diphosphate: step 2/3. ARA:AT5G24150-MONOMER; R-ATH-191273; 1.14.14.17 56606,13247,12780,12290,53787 Squalene epoxidase 5 (AtSQE5) (EC 1.14.14.17) (Squalene monooxygenase 1,1) (SE 1,1),At5g24155 (FAD/NAD(P)-binding oxidoreductase family protein),FAD/NAD(P)-binding oxidoreductase family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506],endoplasmic reticulum [GO:0005783]; FAD binding [GO:0071949]; squalene monooxygenase activity [GO:0004506]; sterol biosynthetic process [GO:0016126],oxidoreductase activity [GO:0016491],integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506] TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems and inflorescences. Detected in siliques. {ECO:0000269|PubMed:17426032}. locus:2151857;,locus:504954999; AT5G24150,AT5G24155 Squalene epoxidase NA NA NA NA NA NA NA ENOG411EE2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoribosylglycinamide synthetase C domain Os12g0197100 protein (Phosphoribosylamine-glycine ligase, chloroplast, putative, expressed) (cDNA clone:J023114O15, full insert sequence) Q2QWF3 Q2QWF3_ORYSJ Os12g0197100 LOC_Os12g09540 Os12g0197100 OSNPB_120197100 ENOG411EE2B Q4PSR5,A0A1P8AY95,F4IRV7 Q4PSR5_ARATH,A0A1P8AY95_ARATH,F4IRV7_ARATH Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein),Cysteine/histidine-rich C1 domain protein 26250,28279,29595 Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein),Cysteine/histidine-rich C1 domain protein cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791],integral component of membrane [GO:0016021],cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791]; intracellular signal transduction [GO:0035556] locus:2065588;,locus:2065604; AT2G37810,AT2G37800 C1-like domain NA NA NA NA NA NA NA ENOG411EE2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os10g0518701 protein,Os10g0520400 protein,Os05g0150100 protein B9G6M6,Q7XCP8,A0A0N7KK58 B9G6M6_ORYSJ,Q7XCP8_ORYSJ,A0A0N7KK58_ORYSJ Os10g0518701 OsJ_32173 OSNPB_100518701,Os10g0520400 LOC_Os10g37600 Os10g0520400 OSNPB_100520400,Os05g0150100 OSNPB_050150100 ENOG411EE2D ELIP2 Q94K66 ELIP2_ARATH Early light-induced protein 2, chloroplastic DISRUPTION PHENOTYPE: Reduced greening during deetiolation in continuous high light, with a reduced ratio between chlorophylls a and especially at the highest irradiances. Slight reduction in the rate of chlorophyll accumulation during greening at moderate light intensities, and lower zeaxanthin accumulation in high light conditions. Normal sensitivity to photoinhibition and photooxidation. Impaired seed germination, especially at hot temperatures (30 degrees Celsius). {ECO:0000269|PubMed:16028115, ECO:0000269|PubMed:16778010, ECO:0000269|PubMed:21299564}. FUNCTION: Probably involved in the integration of pigments into the mature light-harvesting pigment-protein complexes. Light-harvesting chlorophyll (LHC) a/b-binding protein required to ensure a high rate of chlorophyll accumulation during deetiolation in continuous high light. Involved in seed germination. May fulfill a photoprotective functions. Prevents excess accumulation of free chlorophyll by inhibiting the entire chlorophyll biosynthesis pathway (e.g. 5-aminolevulinate synthesis and Mg-protoporphyrin IX chelatase activity), and hence prevent photooxidative stress. {ECO:0000269|PubMed:12676998, ECO:0000269|PubMed:16028115, ECO:0000269|PubMed:16778010, ECO:0000269|PubMed:17553115, ECO:0000269|PubMed:21299564}. 20345 Early light-induced protein 2, chloroplastic chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; substrate-specific transmembrane transporter activity [GO:0022891]; cellular response to blue light [GO:0071483]; cellular response to far red light [GO:0071490]; cellular response to heat [GO:0034605]; cellular response to high light intensity [GO:0071486]; cellular response to red light [GO:0071491]; cellular response to UV-A [GO:0071492]; photoprotection [GO:0010117]; photosynthesis [GO:0015979]; positive regulation of seed germination [GO:0010030]; regulation of chlorophyll biosynthetic process [GO:0010380]; response to far red light [GO:0010218]; response to red light [GO:0010114]; response to UV-B [GO:0010224]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Appears transiently during greening of etiolated seedlings and disappears before chloroplast development is completed. {ECO:0000269|PubMed:16028115}. locus:2130085; AT4G14690 early light-induced protein NA NA NA NA NA NA NA ENOG411EE2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRAF-type zinc finger NA NA NA NA NA NA NA ENOG411EE2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family S41 NA NA NA NA NA NA NA ENOG411EE2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE2H Q84JV8 Q84JV8_ARATH Sterol O-acyltransferase, putative (DUF1639) (Uncharacterized protein At3g03880) 22112 Sterol O-acyltransferase, putative (DUF1639) (Uncharacterized protein At3g03880) transferase activity, transferring acyl groups [GO:0016746] locus:2079409; AT3G03880 Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411EE2I B3H5Z2,F4JHC9 B3H5Z2_ARATH,F4JHC9_ARATH Acyl-CoA thioesterase family protein 44550,49850 Acyl-CoA thioesterase family protein acyl-CoA hydrolase activity [GO:0047617]; acyl-CoA metabolic process [GO:0006637] locus:2127078; AT4G00520 Acyl-CoA thioesterase NA NA NA NA NA NA NA ENOG411EE2J TCX7 F4JY84,A0A1R7T3L3,A0A1R7T3L4 TCX7_ARATH,A0A1R7T3L3_ARATH,A0A1R7T3L4_ARATH Protein tesmin/TSO1-like CXC 7 (AtTCX7),Tesmin/TSO1-like CXC domain-containing protein FUNCTION: Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. 51357,50887,56806 Protein tesmin/TSO1-like CXC 7 (AtTCX7),Tesmin/TSO1-like CXC domain-containing protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275] locus:2145294; AT5G25790 Pfam:CXC NA NA NA NA NA NA NA ENOG411EE2M APA3 Q9XEC4,F4JGD2 APA3_ARATH,F4JGD2_ARATH Aspartic proteinase A3 (EC 3.4.23.-),Saposin-like aspartyl protease family protein FUNCTION: Involved in the processing and degradation of storage proteins. {ECO:0000250}. R-ATH-2132295;R-ATH-6798695; 3.4.23.- 55571,55102 Aspartic proteinase A3 (EC 3.4.23.-),Saposin-like aspartyl protease family protein extracellular region [GO:0005576]; aspartic-type endopeptidase activity [GO:0004190]; lipid metabolic process [GO:0006629]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; response to cadmium ion [GO:0046686],aspartic-type endopeptidase activity [GO:0004190]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in petals, carpels and seed pods. {ECO:0000269|PubMed:12230581}. locus:2137189; AT4G04460 Saposin-like type B region 2 NA NA NA NA NA NA NA ENOG411EE20 YUP8H12.10 Q1PFY3 Q1PFY3_ARATH CCT motif family protein 41666 CCT motif family protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2207155; AT1G05290 Transcription factor NA NA NA NA NA NA NA ENOG411EE21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain Os07g0627100 protein (Fragment) C7J518 C7J518_ORYSJ Os07g0627100 Os07g0627100 OSNPB_070627100 ENOG411EE22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EE23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EE24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411EE25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EE26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: guanine nucleotide exchange factor Os03g0665950 protein,Os03g0613100 protein C7IZF2,A0A0P0W066 C7IZF2_ORYSJ,A0A0P0W066_ORYSJ Os03g0665950 OSNPB_030665950,Os03g0613100 OSNPB_030613100 ENOG411EE28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EE29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXAX Q8L7M7,Q9CAT4 Q8L7M7_ARATH,Q9CAT4_ARATH At1g17820 (Testis-expressed sequence 2-like protein (DUF2404)) (Uncharacterized protein At1g17820),Testis-expressed sequence 2-like protein (DUF2404) (Uncharacterized protein T18K17.13) 90111,87051 At1g17820 (Testis-expressed sequence 2-like protein (DUF2404)) (Uncharacterized protein At1g17820),Testis-expressed sequence 2-like protein (DUF2404) (Uncharacterized protein T18K17.13) endoplasmic reticulum [GO:0005783]; lipid binding [GO:0008289],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; lipid binding [GO:0008289] locus:2030983;,locus:2197269; AT1G17820,AT1G73200 Putative integral membrane protein conserved region (DUF2404) Os02g0827500 protein (Fragment) A0A0P0VRH8 A0A0P0VRH8_ORYSJ Os02g0827500 OSNPB_020827500 ENOG411DTB6 B3H6L5,B6EUB1 B3H6L5_ARATH,B6EUB1_ARATH N-acetyltransferase 67891,60765 N-acetyltransferase N-acetyltransferase activity [GO:0008080] locus:2060535; AT2G41450 Inherit from KOG: PAX interacting (with transcription-activation domain) protein 1 NA NA NA NA NA NA NA ENOG411DTB7 F14P3.19 Q9LF25,Q9S7R9 Q9LF25_ARATH,Q9S7R9_ARATH Bromodomain transcription factor (Uncharacterized protein T20K14_180),At3g02160 (Bromodomain transcription factor) (F1C9.5 protein) (Uncharacterized protein At3g02160) (Uncharacterized protein F14P3.19) 42669,44072 Bromodomain transcription factor (Uncharacterized protein T20K14_180),At3g02160 (Bromodomain transcription factor) (F1C9.5 protein) (Uncharacterized protein At3g02160) (Uncharacterized protein F14P3.19) locus:2180852;,locus:2076567; AT5G15570,AT3G02160 BTP NA NA NA NA NA NA NA ENOG411DTB4 Q9C5K4,F4JSF8,F4JSF9 Q9C5K4_ARATH,F4JSF8_ARATH,F4JSF9_ARATH Protein kinase superfamily protein (Putative kinase),Protein kinase superfamily protein 52219,52515,45499 Protein kinase superfamily protein (Putative kinase),Protein kinase superfamily protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; regulation of gene expression [GO:0010468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2134746; AT4G19110 Cyclin-dependent kinase Cyclin-dependent kinase F-4 (CDKF;4) (EC 2.7.11.22) (EC 2.7.11.23) (Serine/threonine-protein kinase MHK-like protein 2),Os02g0700600 protein (Putative serine/threonine-protein kinase Mak) (cDNA clone:J023142H24, full insert sequence),Os02g0700600 protein (Fragment) Q6Z8C8,Q6Z8C7,A0A0P0VNF0,A0A0P0VNE7 CDKF4_ORYSJ,Q6Z8C7_ORYSJ,A0A0P0VNF0_ORYSJ,A0A0P0VNE7_ORYSJ CDKF-4 Os02g0700600 LOC_Os02g47220 OJ1111_E07.13-1 OsJ_08052 P0459B01.42-1,P0459B01.42-2 OJ1111_E07.13-2 Os02g0700600 OSNPB_020700600,Os02g0700600 OSNPB_020700600 ENOG411DTB5 Q9FZ45,Q9ZVA7 Y1686_ARATH,Q9ZVA7_ARATH Uncharacterized membrane protein At1g16860,F9K20.7 protein (Ubiquitin-specific protease family C19-related protein) (Uncharacterized protein At1g78880) 50583,50104 Uncharacterized membrane protein At1g16860,F9K20.7 protein (Ubiquitin-specific protease family C19-related protein) (Uncharacterized protein At1g78880) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; peptidase activity [GO:0008233] locus:2015646;,locus:2037533; AT1G16860,AT1G78880 NA NA NA NA NA NA NA NA ENOG411DTB0 SS4 Q0WVX5 SSY4_ARATH Probable starch synthase 4, chloroplastic/amyloplastic (AtSS4) (EC 2.4.1.21) (Soluble starch synthase IV) DISRUPTION PHENOTYPE: Severe reduced growth, reduced number of starch granules, altered structure of starch granules. {ECO:0000269|PubMed:17217470}. Delay in flowering time.,Lower growth rates under a 16-h day/8-h night photoregime when compared with wild type.,Reduction in starch content. starch turnover along a diurnal cycle was lower in mutant plants than in wild-type plants with a clear reduction of both synthesis and degradation rates. Starch levels at the beginning of the light period were higher in the mutant than in the wild-type plants. However the reduced rate of starch synthesis in the mutant led to a lower starch level at the end of the illuminated period.,Smaller rosette leaves than those of wild type. Slow growth; Small rosette; Late flowering-A. Merida-2007 FUNCTION: Probably involved in the priming of starch granule formation. May play a regulatory role in the control of starch accumulation in plastids. Is necessary and sufficient to establish the correct number of starch granules observed in chloroplasts. {ECO:0000269|PubMed:17217470, ECO:0000269|PubMed:19666739, ECO:0000269|PubMed:21645200}. MISCELLANEOUS: Plants over-expressing SS4 have increased levels of starch in leaves and display a higher growth rate than wild-type. {ECO:0000305|PubMed:21645200}. PATHWAY: Glycan biosynthesis; starch biosynthesis. 2.4.1.21 117747 Probable starch synthase 4, chloroplastic/amyloplastic (AtSS4) (EC 2.4.1.21) (Soluble starch synthase IV) amyloplast [GO:0009501]; chloroplast [GO:0009507]; alpha-1,4-glucan synthase activity [GO:0033201]; glycogen (starch) synthase activity [GO:0004373]; starch synthase activity [GO:0009011]; starch biosynthetic process [GO:0019252]; starch metabolic process [GO:0005982] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:17217470}. locus:2141936; AT4G18240 Starch synthase Starch synthase, chloroplastic/amyloplastic (EC 2.4.1.-) Q84VC7,Q6UBQ7,Q5JMA0,Q5JMA1 Q84VC7_ORYSJ,Q6UBQ7_ORYSJ,Q5JMA0_ORYSJ,Q5JMA1_ORYSJ Os05g0533600 Os05g0533600 OSJNBa0053E05.15 OSNPB_050533600,P0690B02.8-1 Os01g0720600 OSNPB_010720600,P0690B02.8-3 Os01g0720600 OSNPB_010720600,P0690B02.8-2 Os01g0720600 OSNPB_010720600 ENOG411DTB1 FRL3 Q67ZB3 FRL3_ARATH FRIGIDA-like protein 3 62615 FRIGIDA-like protein 3 cell differentiation [GO:0030154]; flower development [GO:0009908] locus:1005716104; AT5G48385 Frigida-like FRIGIDA-like protein,FRIGIDA-like protein (Fragment) Q6K488,Q6K487,Q0J383,A0A0P0XKD5 Q6K488_ORYSJ,Q6K487_ORYSJ,Q0J383_ORYSJ,A0A0P0XKD5_ORYSJ P0499G10.20-1 Os09g0248200 OJ1695_A02.5-1 OSNPB_090248200,P0499G10.20-2 Os09g0248200 OJ1695_A02.5-2 OsJ_28510 OSNPB_090248200,Os09g0248300 Os09g0248300 OsJ_28511 OSNPB_090248300,Os09g0248200 OSNPB_090248200 ENOG411DTB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DTBV MGD2 O82730 MGDG2_ARATH Monogalactosyldiacylglycerol synthase 2, chloroplastic (AtMGD2) (EC 2.4.1.46) (MGDG synthase type B) No visible or biochemically determinable mutant phenotype observed under nutrient-sufficient conditions.,Under Pi starved conditions reduced DGDG content is observed the proportion of phosphatidylethanolamine and phosphatidylcholine increased approximately two-fold in shoot and large differences in fatty acid compositions of galactolipids are seen in shoots and particularly roots. Under these conditions the fresh weight of shoots and roots was reduced. FUNCTION: Involved in the synthesis of the major structural component of photosynthetic membranes and in the chloroplast envelope biogenesis. Can use both prokaryotic (18:1/16:0) or eukaryotic (18:2/18:2) 1,2-diacylglycerol species, but operates with some preference for the eukaryotic one. {ECO:0000269|PubMed:11553816}. MISCELLANEOUS: Auxin activates expression during Pi starvation, whereas cytokinin represses it. MetaCyc:AT5G20410-MONOMER; 2.4.1.46; 2.4.1.46 52727 Monogalactosyldiacylglycerol synthase 2, chloroplastic (AtMGD2) (EC 2.4.1.46) (MGDG synthase type B) chloroplast outer membrane [GO:0009707]; 1,2-diacylglycerol 3-beta-galactosyltransferase activity [GO:0046509]; UDP-galactosyltransferase activity [GO:0035250]; cellular response to phosphate starvation [GO:0016036]; fatty acid metabolic process [GO:0006631]; galactolipid metabolic process [GO:0019374]; glycolipid biosynthetic process [GO:0009247] DEVELOPMENTAL STAGE: Low and continuous expression throughout whole developmental stages. {ECO:0000269|PubMed:11553816}. TISSUE SPECIFICITY: Expressed mainly in floral buds. Detected in roots, leaves, stems, siliques and pollen tubes. {ECO:0000269|PubMed:11553816, ECO:0000269|PubMed:14730084}. locus:2149274; AT5G20410 monogalactosyldiacylglycerol synthase Probable monogalactosyldiacylglycerol synthase 3, chloroplastic (OsMGD3) (EC 2.4.1.46),Os02g0802700 protein,Os02g0802700 protein (Fragment) Q0DWQ1,A0A0P0VR13,A0A0P0VQS5 MGDG3_ORYSJ,A0A0P0VR13_ORYSJ,A0A0P0VQS5_ORYSJ MGD3 Os02g0802700 LOC_Os02g55910 OsJ_008461 P0689B12.17,Os02g0802700 OSNPB_020802700 FUNCTION: Involved in the synthesis of the major structural component of photosynthetic membranes. {ECO:0000250}. ENOG411DTBW Q9FGY8,A0A1R7T373 Q9FGY8_ARATH,A0A1R7T373_ARATH Chaperone DnaJ-domain superfamily protein (Similarity to unknown protein),Chaperone DnaJ-domain superfamily protein 77974,62561 Chaperone DnaJ-domain superfamily protein (Similarity to unknown protein),Chaperone DnaJ-domain superfamily protein integral component of membrane [GO:0016021] locus:2157804; AT5G49580 DnaJ domain Os03g0832900 protein Q0DM19 Q0DM19_ORYSJ Os03g0832900 Os03g0832900 OSNPB_030832900 ENOG411DTBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0528800 protein (cDNA clone:J033111I11, full insert sequence) Q6ZIB7 Q6ZIB7_ORYSJ Os08g0528800 OJ1770_H02.13 OSNPB_080528800 ENOG411DTBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase OSJNBa0065O17.2 protein (OSJNBb0012E24.15 protein) (Os04g0557000 protein) (cDNA clone:J013121O07, full insert sequence) Q7XTZ9 Q7XTZ9_ORYSJ Os04g0557000 OSJNBa0065O17.2 OSJNBb0012E24.15 OSNPB_040557000 ENOG411DTBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os09g0407800 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:001-114-H02, full insert sequence) Q69MX4 Q69MX4_ORYSJ Os09g0407800 OJ1261_A08.55 OSNPB_090407800 P0465E03.7 ENOG411DTBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Os07g0182200 protein (cDNA clone:J013073L03, full insert sequence),Lipoamide dehydrogenase, putative, expressed (Os03g0797600 protein) (cDNA clone:006-203-H10, full insert sequence),Os03g0797600 protein Q0D859,Q7Y1H4,A0A0P0W4K4 Q0D859_ORYSJ,Q7Y1H4_ORYSJ,A0A0P0W4K4_ORYSJ Os07g0182200 Os07g0182200 OSNPB_070182200,OSJNBa0094F01.11 LOC_Os03g58330 Os03g0797600 OSNPB_030797600,Os03g0797600 OSNPB_030797600 ENOG411DTBP TSK Q6Q4D0 TONS_ARATH Protein TONSOKU (Protein BRUSHY 1) (Protein MGOUN 3) DISRUPTION PHENOTYPE: Abnormal enlargement of the shoot apical meristem associated with a disrupted cellular and subcellular organization. Release of transcriptional gene silencing of heterochromatic genes, and ectopic gene expression and organogenesis. Under-expression of FLC and early flowering in short days. {ECO:0000269|PubMed:14966212, ECO:0000269|PubMed:16728410, ECO:0000269|PubMed:21705754}. Short roots; Fasciated stems and inflorescences-A. Morikami-2002 FUNCTION: Required for cell arrangement in root and shoot apical meristems. Involved in structural and functional stabilization of chromatin and may represent a link between response to DNA damage and epigenetic gene silencing. May be involved, when interacting with TSA1, in the organization of spindle microtubules. {ECO:0000269|PubMed:14966212, ECO:0000269|PubMed:15082530, ECO:0000269|PubMed:16728410, ECO:0000269|PubMed:21705754}. 146482 Protein TONSOKU (Protein BRUSHY 1) (Protein MGOUN 3) membrane [GO:0016020]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; cell division [GO:0051301]; covalent chromatin modification [GO:0016569]; G2/M transition of mitotic cell cycle [GO:0000086]; meristem structural organization [GO:0009933]; regulation of meristem structural organization [GO:0009934] TISSUE SPECIFICITY: Preferentially expressed in the shoot apex than in the leaves and stems. Expressed in the shoot apex and root tips in 5-day-old seedlings. At the shoot apex it is expressed in young leaves and in broad areas between two cotyledons. Weakly or not expressed in vascular tissues except vascular tissue near the shoot apical meristem. In the root, it extends from the root apical meristem to the elongation zone. {ECO:0000269|PubMed:15125773, ECO:0000269|PubMed:15964904}. locus:2094019; AT3G18730 TPR NA NA NA NA NA NA NA ENOG411DTBQ PCMP-E100 Q9SUF9 PP305_ARATH Pentatricopeptide repeat-containing protein At4g08210 75825 Pentatricopeptide repeat-containing protein At4g08210 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2132452; AT4G08210 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DTBZ DELTA-ADR Q9C744 AP3D_ARATH AP-3 complex subunit delta (Adaptor-related protein complex 3 subunit delta) (Delta-adaptin) (At-d-Ad) (At-delta-Ad) (Protein-affected trafficking 4) DISRUPTION PHENOTYPE: No obvious phenotype except defective lytic vacuoles with altered morphology and accumulation of proteins. {ECO:0000269|PubMed:19884248, ECO:0000269|PubMed:21670741}. FUNCTION: Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles. {ECO:0000269|PubMed:21670741}. 97154 AP-3 complex subunit delta (Adaptor-related protein complex 3 subunit delta) (Delta-adaptin) (At-d-Ad) (At-delta-Ad) (Protein-affected trafficking 4) AP-3 adaptor complex [GO:0030123]; Golgi membrane [GO:0000139]; endosome organization [GO:0007032]; intracellular protein transport [GO:0006886]; lytic vacuole organization [GO:0080171]; protein storage vacuole organization [GO:1990019]; vesicle-mediated transport [GO:0016192] locus:2008129; AT1G48760 AP-3 complex subunit Os01g0512200 protein (Fragment),Os01g0512200 protein A0A0P0V3C7,A0A0P0V375 A0A0P0V3C7_ORYSJ,A0A0P0V375_ORYSJ Os01g0512200 OSNPB_010512200 ENOG411DTBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dual specificity phosphatase catalytic domain NA NA NA NA NA NA NA ENOG411DTBY BHLH112 Q94JL3,F4HVD9,A0A1P8AVD6,F4HVE0 BH112_ARATH,F4HVD9_ARATH,A0A1P8AVD6_ARATH,F4HVE0_ARATH Transcription factor bHLH112 (Basic helix-loop-helix protein 112) (AtbHLH112) (bHLH 112) (Transcription factor EN 64) (bHLH transcription factor bHLH112),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43041,42686,36164,40502 Transcription factor bHLH112 (Basic helix-loop-helix protein 112) (AtbHLH112) (bHLH 112) (Transcription factor EN 64) (bHLH transcription factor bHLH112),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to salt stress [GO:0071472]; cellular response to water deprivation [GO:0042631]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of proline metabolic process [GO:2000214]; regulation of reactive oxygen species metabolic process [GO:2000377]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983],DNA binding [GO:0003677] locus:2195763; AT1G61660 Whole genome shotgun sequence of line PN40024 scaffold_274.assembly12x (Fragment) Os01g0784900 protein A0A0P0V911 A0A0P0V911_ORYSJ Os01g0784900 OSNPB_010784900 ENOG411DTBG F1P2.140,F1P2.110 Q9ZUN7,Q9SN79,Q24JN1,Q9SN82,A0A1P8BG34,A0A1I9LST7,A0A1P8BG50,F4I353,A0A1I9LMK8,F4JBL2,A0A1I9LMK9,A0A1I9LML0,A8MRM8 Q9ZUN7_ARATH,Q9SN79_ARATH,Q24JN1_ARATH,Q9SN82_ARATH,A0A1P8BG34_ARATH,A0A1I9LST7_ARATH,A0A1P8BG50_ARATH,F4I353_ARATH,A0A1I9LMK8_ARATH,F4JBL2_ARATH,A0A1I9LMK9_ARATH,A0A1I9LML0_ARATH,A8MRM8_ARATH Alpha/beta-Hydrolases superfamily protein (Putative esterase),Alpha/beta-Hydrolases superfamily protein (At3g47590) (Uncharacterized protein At3g47590) (Uncharacterized protein F1P2.140),Alpha/beta-Hydrolases superfamily protein (At5g11910),Alpha/beta-Hydrolases superfamily protein (At3g47560) (Uncharacterized protein F1P2.110),Alpha/beta-Hydrolases superfamily protein 37964,35049,33775,29869,35975,26091,20535,35287,32854,36069,33950,33084,18336 Alpha/beta-Hydrolases superfamily protein (Putative esterase),Alpha/beta-Hydrolases superfamily protein (At3g47590) (Uncharacterized protein At3g47590) (Uncharacterized protein F1P2.140),Alpha/beta-Hydrolases superfamily protein (At5g11910),Alpha/beta-Hydrolases superfamily protein (At3g47560) (Uncharacterized protein F1P2.110),Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787],peroxisome [GO:0005777]; hydrolase activity [GO:0016787],cytosol [GO:0005829]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2050399;,locus:2079172;,locus:2143089;,locus:2019277;,locus:2079127; AT2G19550,AT3G47590,AT5G11910,AT3G47560,AT1G29840 Esterase lipase thioesterase family protein Os05g0539500 protein (Fragment),Esterase/lipase/thioesterase family protein-like (Os01g0580000 protein),Esterase/lipase/thioesterase family protein-like (Os01g0579900 protein) (cDNA clone:J013001P21, full insert sequence),Os01g0580000 protein Q0DGD6,Q9AWW1,Q656F2,A0A0P0V4E5 Q0DGD6_ORYSJ,Q9AWW1_ORYSJ,Q656F2_ORYSJ,A0A0P0V4E5_ORYSJ Os05g0539500 Os05g0539500 OSNPB_050539500,P0013G02.37-1 P0672C09.17-1 Os01g0580000 OSNPB_010580000,Os01g0579900 OsJ_02336 OSNPB_010579900 P0013G02.36 P0672C09.16,Os01g0580000 OSNPB_010580000 ENOG411DTBD Q93Y38 GDT13_ARATH GDT1-like protein 3 31525 GDT1-like protein 3 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] locus:2183632; AT5G36290 GDT1-like protein GDT1-like protein 3,GDT1-like protein 4 Q2R4J1,Q6ZIB9 GDT13_ORYSJ,GDT14_ORYSJ Os11g0472500 LOC_Os11g28300 OsJ_33855,Os08g0528500 LOC_Os08g41670 OJ1770_H02.9 OsJ_28031 ENOG411DTBE Q9LYW0,A0A1P8BDR8 Y5325_ARATH,A0A1P8BDR8_ARATH BTB/POZ domain-containing protein At5g03250,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 66343,53995 BTB/POZ domain-containing protein At5g03250,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:2143558; AT5G03250 BTB POZ domain-containing protein Os01g0780600 protein (Putative non-phototropic hypocotyl 3) Q5ZCG0 Q5ZCG0_ORYSJ Os01g0780600 OsJ_03677 OSNPB_010780600 P0010B10.30 ENOG411DTBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 32 C terminal Beta-fructofuranosidase, insoluble isoenzyme 6 (EC 3.2.1.26) (Cell wall beta-fructosidase 6) (Invertase 6) (OsCIN6) (Sucrose hydrolase 6) Q56UD0 INV6_ORYSJ CIN6 Os04g0664800 LOC_Os04g56920 OSJNBa0087O24.3 ENOG411DTBC Q6DSR1,Q6DSR3,F4ITP1,A0A1I9LR89 Q6DSR1_ARATH,Q6DSR3_ARATH,F4ITP1_ARATH,A0A1I9LR89_ARATH BRCT domain-containing DNA repair protein,BRCT domain DNA repair protein 49783,56408,58881,34996 BRCT domain-containing DNA repair protein,BRCT domain DNA repair protein locus:2097149;,locus:2057711; AT3G43930,AT2G26270 BRCT Os09g0440200 protein,Os09g0440200 protein (Fragment) Q69P85,A0A0P0XNG4 Q69P85_ORYSJ,A0A0P0XNG4_ORYSJ Os09g0440200 OJ1344_B01.26 OSNPB_090440200,Os09g0440200 OSNPB_090440200 ENOG411E5KD LATE Q9FKA9 LATE_ARATH Protein LATE FLOWERING FUNCTION: Acts as a transcriptional repressor. Prevents the photoperiodic and circadian clock-dependent transition to flowering in long days (LD) by repressing the expression of flowering time genes (e.g. FT, GI and CO) in the leaf vasculature, and by interfering with floral meristem identity genes at the apex (e.g. SOC1 and LFY). {ECO:0000269|PubMed:21771123}. 19448 Protein LATE FLOWERING nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In seedlings, present in cotyledons and in the hypocotyl. Later expressed specifically in the leaf vasculature, the vegetative shoot apical meristem and emerging leaf primordia. At the onset of flowering, observed at the shoot apex, but excluded from the first visible floral buds of the bolting inflorescence. In flowers, confined to the vasculature of the sepals. {ECO:0000269|PubMed:21771123}. TISSUE SPECIFICITY: Mostly expressed in leaves and flower buds, and, to a lower extent, in seedlings and shoot apex, but not in roots and floral primordia. {ECO:0000269|PubMed:21771123}. locus:2156529; AT5G48890 Inherit from euNOG: Zinc finger protein NA NA NA NA NA NA NA ENOG411E5KR Q58FT9,B3H4E6 Q58FT9_ARATH,B3H4E6_ARATH Carboxypeptidase (Expressed protein),Carboxypeptidase 14877,13450 Carboxypeptidase (Expressed protein),Carboxypeptidase carboxypeptidase activity [GO:0004180] locus:2144436; AT5G38060 NA Os08g0364500 protein Q8H4W9 Q8H4W9_ORYSJ OJ1484_G09.107 Os08g0364500 OJ1118_F01.23 OsJ_27066 OSNPB_080364500 ENOG411DU76 Q9FGN4,Q9FGN3,Q8VYT5 FB289_ARATH,FB290_ARATH,FB254_ARATH F-box protein At5g51370,F-box protein At5g51380,F-box protein At5g07670 49590,53147,52993 F-box protein At5g51370,F-box protein At5g51380,F-box protein At5g07670 locus:2163685;,locus:2163690;,locus:2160314; AT5G51370,AT5G51380,AT5G07670 F-box protein F-box protein-like (Os02g0658500 protein) Q6H678 Q6H678_ORYSJ OJ1112_F09.25-1 P0708H12.4-1 Os02g0658500 OSNPB_020658500 ENOG411DTQJ Q9C884,Q9SZX8 PMTI_ARATH,PMTH_ARATH Probable methyltransferase PMT18 (EC 2.1.1.-),Probable methyltransferase PMT17 (EC 2.1.1.-) 2.1.1.- 73186,72387 Probable methyltransferase PMT18 (EC 2.1.1.-),Probable methyltransferase PMT17 (EC 2.1.1.-) cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2196651;,locus:2127711; AT1G33170,AT4G10440 methyltransferase Dehydration-responsive protein-like (Os06g0128100 protein),Dehydration-responsive protein-like (Os06g0103900 protein),Dehydration-responsive family protein, putative, expressed (Os10g0510400 protein) (cDNA clone:J033005B11, full insert sequence) Q8H636,Q5VRG9,Q94GX1 Q8H636_ORYSJ,Q5VRG9_ORYSJ,Q94GX1_ORYSJ Os06g0128100 OSJNBa0038F22.25 OSNPB_060128100 P0538C01.3,Os06g0103900 OsJ_19817 OSJNBa0075G19.36 OSNPB_060103900,Os10g0510400 LOC_Os10g36690 Os10g0510400 OsJ_32126 OSJNBa0005K07.2 OSNPB_100510400 ENOG411E2BX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF566) Os07g0115600 protein (Proteophosphoglycan-like) Q8H2N8 Q8H2N8_ORYSJ OJ1138_B05.117 Os07g0115600 OSNPB_070115600 ENOG411E5K4 Q5XVD2 Q5XVD2_ARATH Replication factor-A carboxy-terminal domain protein 18404 Replication factor-A carboxy-terminal domain protein locus:504956042; AT2G28105 Replication factor-A C terminal domain NA NA NA NA NA NA NA ENOG411DUGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative serine esterase (DUF676) Os02g0787100 protein A0A0P0VQJ9 A0A0P0VQJ9_ORYSJ Os02g0787100 OSNPB_020787100 ENOG411E5K0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EJGY F4IB79 F4IB79_ARATH Transmembrane protein 8433 Transmembrane protein integral component of membrane [GO:0016021] locus:2195865; AT1G51920 NA NA NA NA NA NA NA NA ENOG411EJGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EJGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EJGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant (LEA) group 1 NA NA NA NA NA NA NA ENOG411EHFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alanine racemase N-terminal domain NA NA NA NA NA NA NA ENOG411EHFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: atp synthase Os07g0495400 protein Q8H4R7 Q8H4R7_ORYSJ OJ1457_D07.104 OJ1058_B11.125 Os07g0495400 OSNPB_070495400 ENOG411E0B9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1336) Os03g0759000 protein A0A0P0W3J5 A0A0P0W3J5_ORYSJ Os03g0759000 OSNPB_030759000 ENOG411E0B8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3741) Os02g0617100 protein (Fragment) A0A0N7KFP4 A0A0N7KFP4_ORYSJ Os02g0617100 OSNPB_020617100 ENOG411E0B1 Q9LK96 Q9LK96_ARATH AT3g15090/K15M2_24 (GroES-like zinc-binding alcohol dehydrogenase family protein) (Oxidoreductase-like protein) ARA:GQT-2836-MONOMER; 39394 AT3g15090/K15M2_24 (GroES-like zinc-binding alcohol dehydrogenase family protein) (Oxidoreductase-like protein) oxidoreductase activity [GO:0016491] locus:2086335; AT3G15090 Reticulon-4-interacting protein 1 Os01g0753100 protein (Putative NOGO-interacting mitochondrial protein),Os01g0753100 protein (Fragment) Q5JMM6,A0A0P0V8D7 Q5JMM6_ORYSJ,A0A0P0V8D7_ORYSJ Os01g0753100 OSNPB_010753100 P0435B05.30 P0503C12.2,Os01g0753100 OSNPB_010753100 ENOG411E0B0 DJC82 F4J794 F4J794_ARATH Chaperone DnaJ-domain superfamily protein 27647 Chaperone DnaJ-domain superfamily protein chloroplast [GO:0009507] locus:5019474746; AT3G05345 DnaJ domain Os05g0397800 protein A0A0P0WM26 A0A0P0WM26_ORYSJ Os05g0397800 OSNPB_050397800 ENOG411E0B3 RPL18AA,RPL18AB,RPL18AC Q8L7K0,P51418,Q9LUD4,Q8L9S1,A0A1P8AY36,F4I376,A8MRF3 R18A1_ARATH,R18A2_ARATH,R18A3_ARATH,R18AL_ARATH,A0A1P8AY36_ARATH,F4I376_ARATH,A8MRF3_ARATH 60S ribosomal protein L18a-1,60S ribosomal protein L18a-2,60S ribosomal protein L18a-3,60S ribosomal protein L18a-like protein,Ribosomal protein L18ae/LX family protein,60S ribosomal protein L18A-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 21284,21307,21309,17473,25730,22315,36075 60S ribosomal protein L18a-1,60S ribosomal protein L18a-2,60S ribosomal protein L18a-3,60S ribosomal protein L18a-like protein,Ribosomal protein L18ae/LX family protein,60S ribosomal protein L18A-1 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; embryo development ending in seed dormancy [GO:0009793]; mature ribosome assembly [GO:0042256]; pollen tube growth [GO:0009860]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],integral component of membrane [GO:0016021]; ribosome [GO:0005840],integral component of membrane [GO:0016021]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:1005716700;,locus:2040914;,locus:2089516;,locus:2198269; AT1G29965,AT2G34480,AT3G14600,AT1G29970 60s ribosomal protein l18a-1 60S ribosomal protein L18a Q943F3,Q6AUF5 RL18A_ORYSJ,Q6AUF5_ORYSJ RPL18A Os01g0752300 LOC_Os01g54870 OsJ_03475 P0046E05.38 P0435B05.19,Os05g0565000 Os05g0565000 OsJ_19561 OSJNBb0053D02.16 OSNPB_050565000 ENOG411E0B2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL8 (Protein YELLOW STRIPE LIKE 8) (OsYSL8) Q0E4J6 YSL8_ORYSJ YSL8 Os02g0116400 LOC_Os02g02460 OJ1442_E05.17 OsJ_004979 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411E0B5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 Methyltransferase, putative, expressed (Os03g0379100 protein) Q10KL9 Q10KL9_ORYSJ Os03g0379100 LOC_Os03g26200 Os03g0379100 OsJ_11050 OSJNBa0013O08.23 OSNPB_030379100 ENOG411E0B4 PTAC16 Q9STF2 PTA16_ARATH Protein plastid transcriptionally active 16, chloroplastic (pTAC16) DISRUPTION PHENOTYPE: No visible phenotype and normal nucleoids. {ECO:0000269|PubMed:22616989}. FUNCTION: Probably involved in the regulation of plastid gene expression. {ECO:0000305}. 54358 Protein plastid transcriptionally active 16, chloroplastic (pTAC16) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast nucleoid [GO:0042644]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; stromal side of plastid thylakoid membrane [GO:0098572]; circadian rhythm [GO:0007623] locus:2102842; AT3G46780 NmrA-like family Os05g0291700 protein (cDNA clone:002-143-C11, full insert sequence),Os05g0291700 protein B7F1B2,Q0DJF9,A0A0P0WKD6 B7F1B2_ORYSJ,Q0DJF9_ORYSJ,A0A0P0WKD6_ORYSJ Os05g0291700 OSNPB_050291700,Os05g0291700 Os05g0291700 OSNPB_050291700 ENOG411E0B7 Q8VYC5,A0A1P8AVD8,F4IAP5,B3H739 Q8VYC5_ARATH,A0A1P8AVD8_ARATH,F4IAP5_ARATH,B3H739_ARATH Ketose-bisphosphate aldolase class-II family protein (Uncharacterized protein At1g18270),Ketose-bisphosphate aldolase class-II family protein ARA:AT1G18270-MONOMER; 147043,140723,149430,147114 Ketose-bisphosphate aldolase class-II family protein (Uncharacterized protein At1g18270),Ketose-bisphosphate aldolase class-II family protein aldehyde-lyase activity [GO:0016832]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; zinc ion binding [GO:0008270]; carbohydrate metabolic process [GO:0005975],nucleus [GO:0005634]; aldehyde-lyase activity [GO:0016832]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; zinc ion binding [GO:0008270]; carbohydrate metabolic process [GO:0005975] locus:2014094; AT1G18270 ketose-bisphosphate aldolase Os06g0258900 protein (Putative fructose/tagatose bisphosphate aldolase) (cDNA clone:J013116E07, full insert sequence),Os06g0258900 protein (Fragment) Q652S1,A0A0P0WVE0 Q652S1_ORYSJ,A0A0P0WVE0_ORYSJ P0603C10.39-1 Os06g0258900 OsJ_20876 OSNPB_060258900,Os06g0258900 OSNPB_060258900 ENOG411E0B6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0BY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription activator that binds to the DNA sequence 5'-CAAT AT ATTG-3' Homeobox-leucine zipper protein HOX5 (HD-ZIP protein HOX5) (Homeodomain transcription factor HOX5) (OsHox5),Os08g0416000 protein (Fragment) Q6ZA74,A0A0P0XFK5 HOX5_ORYSJ,A0A0P0XFK5_ORYSJ HOX5 Os08g0416000 LOC_Os08g32080 OsJ_026223 P0433E10.14-1,Os08g0416000 OSNPB_080416000 FUNCTION: Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. ENOG411E0BX RNR2A P50651 RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A (EC 1.17.4.1) (Ribonucleoside-diphosphate reductase R2A subunit) (AtRNR2) (Protein R2at) (Ribonucleotide reductase small subunit A) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with RNR2B and TSO2. Rnr2a and rnr2b double mutants have no visible phenotype. {ECO:0000269|PubMed:16399800}. rnr2a-1 is actually an rnr2a-1 rnr2b-1 double mutant and is phenotypically wild-type,tso2-1 rnr2a-1 seedlings did not develop beyond the two- to four-leaf stage. Their SAMs were terminated with callus-like cells and their leaves exhibited massively. Exhibited significantly increased sensitivity to UV-C light. FUNCTION: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. {ECO:0000269|PubMed:16399800, ECO:0000269|Ref.5}. MISCELLANEOUS: A substrate-binding catalytic site, located on R1, is formed only in the presence of the second subunit R2. PATHWAY: Genetic information processing; DNA replication. ARA:AT3G23580-MONOMER;MetaCyc:AT3G23580-MONOMER; R-ATH-499943; 1.17.4.1;1.17.4.2; 1.17.4.1 39370 Ribonucleoside-diphosphate reductase small chain A (EC 1.17.4.1) (Ribonucleoside-diphosphate reductase R2A subunit) (AtRNR2) (Protein R2at) (Ribonucleotide reductase small subunit A) cytosol [GO:0005829]; ribonucleoside-diphosphate reductase complex [GO:0005971]; metal ion binding [GO:0046872]; ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [GO:0004748]; deoxyribonucleotide biosynthetic process [GO:0009263]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; multicellular organism development [GO:0007275]; regulation of cell cycle [GO:0051726]; ribonucleotide metabolic process [GO:0009259] DEVELOPMENTAL STAGE: Accumulated during S phase of the cell cycle. {ECO:0000269|PubMed:7821432}. TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves, stems and flowers. {ECO:0000269|PubMed:16399800, ECO:0000269|PubMed:21614643}. locus:2088040; AT3G23580 ribonucleoside-diphosphate reductase NA NA NA NA NA NA NA ENOG411E0BZ Q8GXB1 U548_ARATH UPF0548 protein At2g17695 23245 UPF0548 protein At2g17695 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941] locus:1005716645; AT2G17695 Domain of unknown function (DUF1990) Expressed protein (Os03g0107600 protein) (cDNA clone:J033036L21, full insert sequence),Expressed protein (OSJNBa0020P07.10 protein) (Os03g0107600 protein) (Os04g0119300 protein) (cDNA clone:J023107C13, full insert sequence),Expressed protein (Os03g0107600 protein) Q10SY4,Q7XTJ4,Q10SY6 Q10SY4_ORYSJ,Q7XTJ4_ORYSJ,Q10SY6_ORYSJ Os03g0107600 LOC_Os03g01730 OSNPB_030107600,Os04g0119300 LOC_Os03g01730 Os03g0107600 Os04g0119300 OsJ_09101 OSJNBa0020P07.10 OSNPB_030107600 OSNPB_040119300,Os03g0107600 LOC_Os03g01730 OsJ_09107 OSNPB_030107600 ENOG411E0BQ Q9T071 HXKL2_ARATH Probable hexokinase-like 2 protein (EC 2.7.1.1) ARA:AT4G37840-MONOMER; R-ATH-170822;R-ATH-6798695;R-ATH-70171; 2.7.1.1 54241 Probable hexokinase-like 2 protein (EC 2.7.1.1) cytosol [GO:0005829]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glucose binding [GO:0005536]; hexokinase activity [GO:0004396]; mannokinase activity [GO:0019158]; cellular glucose homeostasis [GO:0001678]; cellular response to DNA damage stimulus [GO:0006974]; glycolytic process [GO:0006096]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to UV-B [GO:0010224]; response to water deprivation [GO:0009414] locus:2137564; AT4G37840 hexokinase-like 2 NA NA NA NA NA NA NA ENOG411E0BP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Os02g0715000 protein (Putative cysteine proteinase) (cDNA clone:001-008-H03, full insert sequence) (cDNA clone:001-021-A12, full insert sequence) Q6ZHP9 Q6ZHP9_ORYSJ Os02g0715000 Os02g0715000 OJ1191_G08.11 OsJ_08138 OSNPB_020715000 ENOG411E0BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Leucine Rich Repeat family protein, expressed (Os10g0374600 protein) (Putative Receptor-like protein kinase),Os10g0375000 protein,Os11g0490200 protein Q8RU46,A0A0P0XTU7,A0A0P0Y2E2 Q8RU46_ORYSJ,A0A0P0XTU7_ORYSJ,A0A0P0Y2E2_ORYSJ Os10g0374600 LOC_Os10g22860 OsJ_31295 OSJNBa0091J06.14 OSNPB_100374600,Os10g0375000 OSNPB_100375000,Os11g0490200 OSNPB_110490200 ENOG411E0BR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0230133 protein C7J9N7 C7J9N7_ORYSJ Os12g0230133 Os12g0230133 OSNPB_120230133 ENOG411E0BU CPRD49 Q9SRM5 CPR49_ARATH GDSL esterase/lipase CPRD49 (EC 3.1.1.-) (Extracellular lipase CPRD49) 3.1.1.- 28584 GDSL esterase/lipase CPRD49 (EC 3.1.1.-) (Extracellular lipase CPRD49) apoplast [GO:0048046]; hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Specifically expressed in anthers (stages 8-12). {ECO:0000269|PubMed:16055634}. locus:2074688; AT3G11210 GDSL esterase lipase GDSL-like Lipase/Acylhydrolase family protein, expressed (GDSL-like Lipase/Acylhydrolase, putative) (Os11g0708400 protein) (cDNA clone:001-043-E11, full insert sequence) (cDNA clone:006-303-H10, full insert sequence) (cDNA clone:J013107K09, full insert sequence) Q7XXR3 Q7XXR3_ORYSJ LOC_Os11g48070 Os11g0708400 OsJ_34891 OSNPB_110708400 ENOG411E0BT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL1 (Protein YELLOW STRIPE LIKE 1) (OsYSL1) Q9FTU1 YSL1_ORYSJ YSL1 Os01g0238700 LOC_Os01g13710 OSJNBa0086P08.25 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411E0BW RPS9B,RPS9C Q9LXG1,Q9FLF0,B3H7J6 RS91_ARATH,RS92_ARATH,B3H7J6_ARATH 40S ribosomal protein S9-1,40S ribosomal protein S9-2,Ribosomal protein S4 R-ATH-156827;R-ATH-1799339;R-ATH-6791226;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 23036,23161,18817 40S ribosomal protein S9-1,40S ribosomal protein S9-2,Ribosomal protein S4 cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; positive regulation of translational fidelity [GO:0045903]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasmodesma [GO:0009506]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; positive regulation of translational fidelity [GO:0045903]; translation [GO:0006412],small ribosomal subunit [GO:0015935]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2150976;,locus:2178082; AT5G15200,AT5G39850 40S ribosomal protein Os03g0379500 protein (Fragment),40S ribosomal protein S9, putative, expressed (Os03g0154700 protein) (Os11g0602600 protein) (cDNA clone:001-038-H02, full insert sequence) (cDNA clone:006-202-G08, full insert sequence) (cDNA clone:006-303-F09, full insert sequence) (cDNA clone:006-310-G01, full insert sequence) (cDNA clone:006-311-D11, full insert sequence) (cDNA clone:J023134P20, full insert sequence),Os11g0602500 protein (Fragment),Os07g0628400 protein (Fragment) Q0DRI8,Q2R1J8,A0A0P0Y445,A0A0P0X948 Q0DRI8_ORYSJ,Q2R1J8_ORYSJ,A0A0P0Y445_ORYSJ,A0A0P0X948_ORYSJ Os03g0379500 Os03g0379500 OSNPB_030379500,LOC_Os03g05980 LOC_Os11g38949 Os03g0154700 Os11g0602600 OsJ_09456 OsJ_34422 OsJ_34424 OSNPB_030154700 OSNPB_110602600,Os11g0602500 OSNPB_110602500,Os07g0628400 OSNPB_070628400 ENOG411E0BV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHA2 domain NA NA NA NA NA NA NA ENOG411E0BI Q9LIR9,B3LFA3,A0A1P8B362,A0A1P8B356,A0A1I9LPT2 NIPA1_ARATH,NIPA2_ARATH,A0A1P8B362_ARATH,A0A1P8B356_ARATH,A0A1I9LPT2_ARATH Probable magnesium transporter NIPA1,Probable magnesium transporter NIPA2,Probable magnesium transporter FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). {ECO:0000250}.,FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. 36292,36600,26257,29757,28040 Probable magnesium transporter NIPA1,Probable magnesium transporter NIPA2,Probable magnesium transporter early endosome [GO:0005769]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095]; magnesium ion transport [GO:0015693],early endosome [GO:0005769]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095] locus:2076186;,locus:2119540; AT3G23870,AT4G13800 magnesium transporter NIPA2-like Probable magnesium transporter (Fragment) A0A0N7KIX5,A0A0P0VJC4 A0A0N7KIX5_ORYSJ,A0A0P0VJC4_ORYSJ Os04g0373000 OSNPB_040373000,Os02g0498300 OSNPB_020498300 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. ENOG411E0BH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0241700 protein,Os01g0873000 protein C7J6X0,A0A0P0VAY6 C7J6X0_ORYSJ,A0A0P0VAY6_ORYSJ Os09g0241700 OSNPB_090241700,Os01g0873000 OSNPB_010873000 ENOG411E0BK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411E0BJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411E0BM MDC12.19 Q6GKV1,A0A1P8BH52,A0A1P8BH44 Q6GKV1_ARATH,A0A1P8BH52_ARATH,A0A1P8BH44_ARATH At5g63220 (Golgi-to-ER traffic-like protein) (Uncharacterized protein At5g63220),Golgi-to-ER traffic-like protein 37177,33098,37071 At5g63220 (Golgi-to-ER traffic-like protein) (Uncharacterized protein At5g63220),Golgi-to-ER traffic-like protein BAT3 complex [GO:0071818]; cytosol [GO:0005829]; protein insertion into ER membrane [GO:0045048]; root hair elongation [GO:0048767] locus:2161917; AT5G63220 Golgi to ER traffic protein 4 homolog Os01g0164700 protein C7IWM8 C7IWM8_ORYSJ Os01g0164700 Os01g0164700 OSNPB_010164700 ENOG411E0BN Q9C5M5 Q9C5M5_ARATH At1g27000/T7N9_6 (GRIP/coiled-coil protein, putative (DUF1664)) (Uncharacterized protein At1g27000) 33013 At1g27000/T7N9_6 (GRIP/coiled-coil protein, putative (DUF1664)) (Uncharacterized protein At1g27000) locus:2205734; AT1G27000 Protein of unknown function (DUF1664) Os05g0182700 protein (cDNA clone:001-034-B09, full insert sequence),Os01g0185100 protein (Fragment) Q65WY7,A0A0P0UZG9 Q65WY7_ORYSJ,A0A0P0UZG9_ORYSJ Os05g0182700 OsJ_17364 OSNPB_050182700 P0683B12.2,Os01g0185100 OSNPB_010185100 ENOG411E0BA WDL6,WDL5 Q0WSZ8,Q94C48,A0A1P8B1J4 WDL6_ARATH,WDL5_ARATH,A0A1P8B1J4_ARATH Protein WVD2-like 6,Protein WVD2-like 5,TPX2 (Targeting protein for Xklp2) protein family FUNCTION: Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. {ECO:0000250|UniProtKB:Q8GYX9}. 44343,47543,44431 Protein WVD2-like 6,Protein WVD2-like 5,TPX2 (Targeting protein for Xklp2) protein family cytoplasm [GO:0005737]; microtubule [GO:0005874],cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; cellular response to ethylene stimulus [GO:0071369] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:23653471}. locus:2040090;,locus:2127771; AT2G25480,AT4G32330 Targeting protein for Xklp2 (TPX2) NA NA NA NA NA NA NA ENOG411E0BC ABI3 Q01593 ABI3_ARATH B3 domain-containing transcription factor ABI3 (Protein ABSCISIC ACID-INSENSITIVE 3) Abscisic acid resistant strong allele reduced sensitivity to ABA inhibition of germination germination of seeds only slightly inhibited by 1mM ABA; normal plant growth; seeds fail to degrade chlorophyll during maturation keeping seeds green until mature.,Abscisic acid resistant strong allele reduced sensitivity to ABA inhibition of germination germination of seeds only slightly inhibited by 1mM ABA; normal plant growth; seeds fail to degrade chlorophyl during maturation keeping seeds green until maturity; absence of seed dormancy; reduced seed desiccation tolerance; reduced seed longevity; seeds lose their viability within 5 weeks of storage at room temperature.,abi3-3 plants exhibited severe seed-specific developmental defects namely reduced dormancy and severely reduced accumulation of seed reserve proteins. The embryos remained green throughout development and were desiccation intolerant. However immature seeds were completely non-dormant and grow normally. The morphological development of abi3-3 embryos does not appear to differ from wild-type and if imbibed 10 DAF the seeds germinate to produce normal looking plantlets. However if the embryos are left to desiccate they do not germinate. It appears that AB13 gene product is not essential for morphogenetic development of the embryo but is required for protection of the embryo prior to desiccation.,Impaired degreening during seed maturation - embryos were green throughout seed development and seeds are green at maturity and first true leaves were already formed at this stage. Embryo at maturity had fewer protein bodies instead large vacuoles were observed in cotyledons. Freshly harvested seeds germinated on wet filter paper within 2-3 days. Chloroplasts were observed in cotyledons of mutants seedlings grown in dark as well as in the true leaves. Seed phenotype of abi3-6 is indistinguishable from abi3-3 allele. Reduced seed dormancy; Insensitive to ABA-J. Giraudat-1992 FUNCTION: Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. MISCELLANEOUS: The truncated abi3-6 mutant lacking the DNA-binding domain is unable to localize to the nucleus and is an embryo stay-green mutant. {ECO:0000305|PubMed:24043799}. 79500 B3 domain-containing transcription factor ABI3 (Protein ABSCISIC ACID-INSENSITIVE 3) cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, RNA polymerase II transcription factor binding [GO:0001076]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; embryo development ending in seed dormancy [GO:0009793]; mitochondria-nucleus signaling pathway [GO:0031930]; plastid organization [GO:0009657]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the embryos, endosperm, and outer teguments of the seed throughout seed development. {ECO:0000269|PubMed:12657652}. TISSUE SPECIFICITY: Isoform 2 accumulates only at the end of seed maturation. {ECO:0000269|PubMed:20525852}. locus:2093166; AT3G24650 transcription factor B3 domain-containing protein VP1 (OsVP1) (Protein viviparous homolog) P37398 VIV_ORYSJ VP1 Os01g0911700 LOC_Os01g68370 P0470A12.15-1 P0470A12.15-2 FUNCTION: Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. ENOG411E0BB WCRKC1 Q9FG36,A0A1P8BA24,A0A1P8BA37,F4K3Y1 TRL31_ARATH,A0A1P8BA24_ARATH,A0A1P8BA37_ARATH,F4K3Y1_ARATH Thioredoxin-like 3-1, chloroplastic (Thioredoxin WCRKC-1),WCRKC thioredoxin 1 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 24517,24575,17459,24665 Thioredoxin-like 3-1, chloroplastic (Thioredoxin WCRKC-1),WCRKC thioredoxin 1 chloroplast stroma [GO:0009570]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662],cell [GO:0005623]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; glycerol ether metabolic process [GO:0006662],chloroplast stroma [GO:0009570]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; glycerol ether metabolic process [GO:0006662] locus:2170174; AT5G06690 thioredoxin-like 3-1 Thioredoxin-like 3-1, chloroplastic,Os02g0774100 protein Q6Z7L3,A0A0P0VQE1 TRL31_ORYSJ,A0A0P0VQE1_ORYSJ Os02g0774100 LOC_Os02g53400 OJ1448_G06.8 OJ1611_C08.36,Os02g0774100 OSNPB_020774100 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411E0BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ammonium Transporter Family Ammonium transporter 3 member 2 (OsAMT3;2),Os03g0838400 protein Q851M9,A0A0P0W5C2 AMT32_ORYSJ,A0A0P0W5C2_ORYSJ AMT3-2 Os03g0838400 LOC_Os03g62200 OsJ_13291 OSJNBa0042I09.15,Os03g0838400 OSNPB_030838400 FUNCTION: Involved in ammonium transport. {ECO:0000250}. ENOG411E0BD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain Glutathione S-transferase, putative, expressed (Os12g0210300 protein) (Putative glutathione S-transferase OsGSTZ2) (cDNA clone:J013048G20, full insert sequence) Q945X3 Q945X3_ORYSJ Os12g0210300 LOC_Os12g10730 Os12g0210300 OsJ_35569 OSNPB_120210300 ENOG411E0BG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XS zinc finger domain Os01g0147700 protein (Putative transcription factor X1) Q5ZDL5 Q5ZDL5_ORYSJ Os01g0147700 Os01g0147700 OSNPB_010147700 P0416D03.43 P0434B04.7 ENOG411E0BF MDK4.20 Q9FG54 Q9FG54_ARATH At5g54370 (Late embryogenesis abundant (LEA) protein-like protein) (Root cap protein 2-like protein) 37819 At5g54370 (Late embryogenesis abundant (LEA) protein-like protein) (Root cap protein 2-like protein) locus:2162555; AT5G54370 Root cap NA NA NA NA NA NA NA ENOG411DSFJ ISS1 Q9C969 ISS1_ARATH Aromatic aminotransferase ISS1 (EC 2.6.1.27) (EC 2.6.1.5) (EC 2.6.1.88) (Methionine aminotransferase ISS1) (Phenylalanine aminotransferase ISS1) (Protein INDOLE SEVERE SENSITIVE 1) (Protein REVERSAL OF SAV3 PHENOTYPE 1) (Tryptophan aminotransferase ISS1) (Tyrosine aminotransferase ISS1) DISRUPTION PHENOTYPE: Suppressor of sav3 mutant plants leading to rescued hypocotyl elongation in response to shade and restored auxin biosynthetic pathway. In continuous white light, elongated hypocotyls and petioles, with increased leaf hyponasty, decreased leaf area, and accelerated leaf senescence as well as early flowering. Increases levels of auxin (IAA), indole-3-pyruvic acid (3-IPA) and the ethylene precursor 1-aminocyclopropane-1-carboxylate (ACC) (PubMed:23377040). Indole-dependent auxin (IAA) overproduction phenotypes including leaf epinasty and adventitious rooting. In contrast to normal plants, uses primarily Trp-independent (Trp-I) IAA synthesis when grown on indole-supplemented medium, but uses primarily Trp-dependent (Trp-D) IAA synthesis when grown on unsupplemented medium. Accumulates strongly IAA and Trp when grown on indole, probably due to loss of Trp catabolism. Altered phenylpropanoid profile (PubMed:26163189). {ECO:0000269|PubMed:23377040, ECO:0000269|PubMed:26163189}. FUNCTION: Coordinates and prevents auxin (IAA) and ethylene biosynthesis, thus regulating auxin homeostasis in young seedlings (PubMed:23377040, PubMed:26163189). Shows aminotransferase activity with methionine; can use the ethylene biosynthetic intermediate L-methionine (L-Met) as an amino donor and the auxin biosynthetic intermediate, indole-3-pyruvic acid (3-IPA) as an amino acceptor to produce L-tryptophan (L-Trp) and 2-oxo-4-methylthiobutyric acid (KMBA) (PubMed:23377040). Can also use tryptophan (Trp), phenylalanine (Phe), and tyrosine (Tyr) as substrates. Regulates tryptophan (Trp) homeostasis and catabolism in mature plants. Also possibly involved in the metabolism of other aromatic amino acids and phenylpropanoid homeostasis (PubMed:26163189). {ECO:0000269|PubMed:23377040, ECO:0000269|PubMed:26163189}. ARA:AT1G80360-MONOMER;MetaCyc:AT1G80360-MONOMER; 2.6.1.27; 2.6.1.5; 2.6.1.88 43762 Aromatic aminotransferase ISS1 (EC 2.6.1.27) (EC 2.6.1.5) (EC 2.6.1.88) (Methionine aminotransferase ISS1) (Phenylalanine aminotransferase ISS1) (Protein INDOLE SEVERE SENSITIVE 1) (Protein REVERSAL OF SAV3 PHENOTYPE 1) (Tryptophan aminotransferase ISS1) (Tyrosine aminotransferase ISS1) cytoplasm [GO:0005737]; cytosol [GO:0005829]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; L-tryptophan:2-oxoglutarate aminotransferase activity [GO:0050362]; L-tyrosine:2-oxoglutarate aminotransferase activity [GO:0004838]; methionine-oxo-acid transaminase activity [GO:0010326]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; aromatic amino acid family metabolic process [GO:0009072]; auxin biosynthetic process [GO:0009851]; auxin homeostasis [GO:0010252]; ethylene biosynthetic process [GO:0009693]; L-phenylalanine metabolic process [GO:0006558]; methionine metabolic process [GO:0006555]; negative regulation of ethylene biosynthetic process [GO:0010366]; negative regulation of indoleacetic acid biosynthetic process via tryptophan [GO:1901997]; phenylpropanoid metabolic process [GO:0009698]; shade avoidance [GO:0009641]; tryptophan catabolic process [GO:0006569]; tryptophan metabolic process [GO:0006568]; tyrosine metabolic process [GO:0006570] TISSUE SPECIFICITY: Expressed in roots, cotyledons and flowers. {ECO:0000269|PubMed:23377040}. locus:2034240; AT1G80360 aminotransferase class I and II family protein Os01g0178000 protein (Putative aspartate aminotransferase),Os01g0178000 protein (Fragment) Q94EG1,A0A0P0UYX6 Q94EG1_ORYSJ,A0A0P0UYX6_ORYSJ P0509B06.2-1 Os01g0178000 OsJ_00598 OSNPB_010178000,Os01g0178000 OSNPB_010178000 ENOG411DSFN PRL1,PRL2 Q42384,Q39190 PRL1_ARATH,PRL2_ARATH Protein pleiotropic regulatory locus 1 (Protein PRL1) (MOS4-associated complex protein 2) (MAC protein 2),Protein pleiotropic regulator PRL2 DISRUPTION PHENOTYPE: Hypersensitivity to glucose and sucrose. Enhanced sensitivity of plants to stress and to growth hormones including cytokinin, ethylene, abscisic acid, and auxin. Accumulation of sugars and starch in leaves, and root elongation. Cell elongation defects. Enhanced susceptibility to virulent and avirulent pathogens. {ECO:0000269|PubMed:17575050}. Sensitive to glucose and sucrose-C. Koncz-1998 FUNCTION: Pleiotropic regulator of glucose, stress and hormone responses. Also regulates cytochrome P450 CYP90A1/CPD. Coordinates the expression of hormone- and stress-related genes and genes related to cell wall modification and growth, leading to altered sugar-dependent growth and developmental responses. Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. By suppressing the expression of several (1)O(2)-responsive genes, PRL1 seems to play a major role in modulating responses of plants to environmental changes by interconnecting (1)O(2)-mediated retrograde signaling with other signaling pathways. Acts as negative regulator of SNF1-related protein kinases AKIN10 and AKIN11 via the inhibition of their interaction with SKP1/ASK1. Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex, PRL1 may function as the substrate recognition module within this complex, leading to the AKIN10 degradation. {ECO:0000269|PubMed:10220464, ECO:0000269|PubMed:11387208, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:17693536, ECO:0000269|PubMed:18223036, ECO:0000269|PubMed:19500298, ECO:0000269|PubMed:20008452, ECO:0000269|PubMed:9765207, ECO:0000269|PubMed:9800212}.,FUNCTION: Pleiotropic regulator. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-72163; 54009,53568 Protein pleiotropic regulatory locus 1 (Protein PRL1) (MOS4-associated complex protein 2) (MAC protein 2),Protein pleiotropic regulator PRL2 catalytic step 2 spliceosome [GO:0071013]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; Prp19 complex [GO:0000974]; cotyledon development [GO:0048825]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; fruit development [GO:0010154]; hormone-mediated signaling pathway [GO:0009755]; innate immune response [GO:0045087]; leaf development [GO:0048366]; mRNA splicing, via spliceosome [GO:0000398]; negative regulation of transcription, DNA-templated [GO:0045892]; protein ubiquitination [GO:0016567]; proteolysis [GO:0006508]; response to glucose [GO:0009749]; root development [GO:0048364]; sugar mediated signaling pathway [GO:0010182],catalytic step 2 spliceosome [GO:0071013]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; precatalytic spliceosome [GO:0071011]; Prp19 complex [GO:0000974]; mRNA splicing, via spliceosome [GO:0000398] locus:2005539;,locus:2089303; AT4G15900,AT3G16650 protein pleiotropic regulatory locus Os03g0339100 protein (PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed) (cDNA clone:J013124B18, full insert sequence) Q10LQ8 Q10LQ8_ORYSJ Os03g0339100 LOC_Os03g21990 Os03g0339100 OSNPB_030339100 ENOG411DSFA APG1 Q9FY99,Q8L743,Q43727 G6PD2_ARATH,G6PD3_ARATH,G6PD1_ARATH Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic (G6PD2) (G6PDH2) (EC 1.1.1.49),Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic (G6PD3) (G6PDH3) (EC 1.1.1.49),Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic (G6PD1) (G6PDH1) (EC 1.1.1.49) FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. The main function of this enzyme is to provide reducing power (NADPH) and pentose phosphates for fatty acid and nucleic acid synthesis which are involved in membrane synthesis and cell division. MISCELLANEOUS: There are 6 glucose-6-phosphate 1-dehydrogenase genes in A.thaliana. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3. 1.1.1.49; 1.1.1.49 67160,67358,65428 Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic (G6PD2) (G6PDH2) (EC 1.1.1.49),Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic (G6PD3) (G6PDH3) (EC 1.1.1.49),Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic (G6PD1) (G6PDH1) (EC 1.1.1.49) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; glucose-6-phosphate dehydrogenase activity [GO:0004345]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt, oxidative branch [GO:0009051],chloroplast [GO:0009507]; glucose-6-phosphate dehydrogenase activity [GO:0004345]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt, oxidative branch [GO:0009051] DEVELOPMENTAL STAGE: Increase of activity in the apex linked to the early stages of the transition from vegetative to reproductive growth. locus:2179887;,locus:2032412;,locus:2165154; AT5G13110,AT1G24280,AT5G35790 glucose-6-phosphate 1-dehydrogenase Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49),Os07g0406300 protein (Fragment) Q7EYK9,Q75IZ9,A0A0P0X4Y1 Q7EYK9_ORYSJ,Q75IZ9_ORYSJ,A0A0P0X4Y1_ORYSJ P0613B07.138 Os07g0406300 OSNPB_070406300,LOC_Os03g29950 Os03g0412800 Os03g29950 OSNPB_030412800,Os07g0406300 OSNPB_070406300 FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. {ECO:0000256|RuleBase:RU362120}. ENOG411DSFC AIB,BHLH3 Q9ZPY8,O23487 AIB_ARATH,BH003_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE (AtAIB) (Basic helix-loop-helix protein 17) (AtbHLH17) (bHLH 17) (Transcription factor EN 35) (bHLH transcription factor bHLH017),Transcription factor bHLH3 (Basic helix-loop-helix protein 3) (AtbHLH3) (bHLH 3) (Transcription factor EN 34) (bHLH transcription factor bHLH003) Weak insensitivity to ABA. Insensitive to ABA-C. Li-2007 FUNCTION: Transcription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}. 63305,52234 Transcription factor ABA-INDUCIBLE bHLH-TYPE (AtAIB) (Basic helix-loop-helix protein 17) (AtbHLH17) (bHLH 17) (Transcription factor EN 35) (bHLH transcription factor bHLH017),Transcription factor bHLH3 (Basic helix-loop-helix protein 3) (AtbHLH3) (bHLH 3) (Transcription factor EN 34) (bHLH transcription factor bHLH003) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}. locus:2039094;,locus:2130619; AT2G46510,AT4G16430 Transcription factor BHLH protein-like (Os01g0705700 protein) Q5N8F6 Q5N8F6_ORYSJ Os01g0705700 OSNPB_010705700 P0684B02.32 P0692C11.13 ENOG411DSFE Q9SV20,Q9SV21,A0A1P8B4C2 COPB2_ARATH,COPB1_ARATH,A0A1P8B4C2_ARATH Coatomer subunit beta-2 (Beta-coat protein 2) (Beta-COP 2),Coatomer subunit beta-1 (Beta-coat protein 1) (Beta-COP 1),Coatomer subunit beta (Beta-coat protein) FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.,FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. {ECO:0000256|PIRNR:PIRNR005727}. R-ATH-6798695;R-ATH-6807878;R-ATH-6811434; 106078,106145,108809 Coatomer subunit beta-2 (Beta-coat protein 2) (Beta-COP 2),Coatomer subunit beta-1 (Beta-coat protein 1) (Beta-COP 1),Coatomer subunit beta (Beta-coat protein) COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; plasmodesma [GO:0009506]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],COPI vesicle coat [GO:0030126]; Golgi membrane [GO:0000139]; structural molecule activity [GO:0005198]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2125259;,locus:2125254; AT4G31490,AT4G31480 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles which further mediate biosynthetic protein transport from the ER via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) NA NA NA NA NA NA NA ENOG411DSFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frigida-like protein FRIGIDA-like protein Q7XIP0 Q7XIP0_ORYSJ OJ1710_H11.106 Os07g0592300 OSNPB_070592300 ENOG411DSFF Q9LQM3 C3H12_ARATH Zinc finger CCCH domain-containing protein 12 (AtC3H12) 40706 Zinc finger CCCH domain-containing protein 12 (AtC3H12) cytosol [GO:0005829]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 3'-UTR binding [GO:0003730]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; regulation of transcription, DNA-templated [GO:0006355] locus:2028306; AT1G32360 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 56 (OsC3H56) Q84UQ3 C3H56_ORYSJ Os08g0159800 LOC_Os08g06330 P0498E12.129 P0672D01.112 ENOG411DSFZ PCO1 Q9LXG9 PCO1_ARATH Plant cysteine oxidase 1 (EC 1.13.11.20) (Hypoxia-responsive unknown protein 29) FUNCTION: Oxidizes N-terminal cysteine residues, thus preparing the protein for N-end rule pathway-mediated proteasomal degradation. Controls the preparation of ERF-VII proteins for degradation via the 26S proteasome. Not active on Cys located inside or at the C-terminus of a peptide. Represses the anaerobic response. {ECO:0000269|PubMed:24599061}. R-ATH-1614558; 1.13.11.20 33014 Plant cysteine oxidase 1 (EC 1.13.11.20) (Hypoxia-responsive unknown protein 29) cytosol [GO:0005829]; nucleus [GO:0005634]; cysteine dioxygenase activity [GO:0017172]; metal ion binding [GO:0046872]; anaerobic respiration [GO:0009061]; detection of hypoxia [GO:0070483]; peptidyl-cysteine oxidation [GO:0018171]; response to hypoxia [GO:0001666] DEVELOPMENTAL STAGE: Expressed throughout development, with the highest expression in mature siliques and during seed germination. {ECO:0000269|PubMed:24599061}. locus:2150866; AT5G15120 2-aminoethanethiol (RAP Annotation release2) Protein of unknown function DUF1637 family protein (Expressed protein) (Os12g0623600 protein) Q2QLY7 Q2QLY7_ORYSJ LOC_Os12g42860 Os12g0623600 OsJ_36924 OSNPB_120623600 ENOG411DSFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: amino acid NA NA NA NA NA NA NA ENOG411DSFS Q8W4G0,A0A1P8AT59,A0A1P8AVS2,F4HTE6,F4HTE0,A0A1P8AT54,A0A1P8AVQ1 Q8W4G0_ARATH,A0A1P8AT59_ARATH,A0A1P8AVS2_ARATH,F4HTE6_ARATH,F4HTE0_ARATH,A0A1P8AT54_ARATH,A0A1P8AVQ1_ARATH NagB/RpiA/CoA transferase-like superfamily protein (Putative translation initiation factor EIF-2B alpha subunit),Eukaryotic translation initiation factor 2B (eIF-2B) family protein,NagB/RpiA/CoA transferase-like superfamily protein,Translation initiation factor eIF-2B subunit alpha R-ATH-72731; 42191,67946,45592,65136,42811,66838,35125 NagB/RpiA/CoA transferase-like superfamily protein (Putative translation initiation factor EIF-2B alpha subunit),Eukaryotic translation initiation factor 2B (eIF-2B) family protein,NagB/RpiA/CoA transferase-like superfamily protein,Translation initiation factor eIF-2B subunit alpha cytoplasm [GO:0005737]; transferase activity [GO:0016740]; translation initiation factor activity [GO:0003743],translation initiation factor activity [GO:0003743],transferase activity [GO:0016740]; cellular metabolic process [GO:0044237],cytoplasm [GO:0005737]; translation initiation factor activity [GO:0003743] locus:2193932;,locus:2197046;locus:2814880; AT1G72340,AT1G53880AT1G53900; Translation initiation factor Initiation factor 2 subunit family protein, expressed (Os12g0497400 protein),Os12g0497400 protein Q2QQD9,Q0IN89 Q2QQD9_ORYSJ,Q0IN89_ORYSJ Os12g0497400 LOC_Os12g31380 OSNPB_120497400,Os12g0497400 Os12g0497400 OsJ_36166 OSNPB_120497400 ENOG411DSFU Q9FXD4,Q9FXD1 Q9FXD4_ARATH,Q9FXD1_ARATH Signal recognition particle subunit SRP72 FUNCTION: Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. {ECO:0000256|PIRNR:PIRNR038922}. R-ATH-1799339; 73070,71823 Signal recognition particle subunit SRP72 signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616],cytosol [GO:0005829]; plasmodesma [GO:0009506]; signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616] locus:2008610;,locus:2008540; AT1G67680,AT1G67650 Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (By similarity) Signal recognition particle subunit SRP72 Q5N842 Q5N842_ORYSJ Os01g0889000 B1099D03.37 OSNPB_010889000 FUNCTION: Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. {ECO:0000256|PIRNR:PIRNR038922}. ENOG411DSFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os11g0689100 protein) (Putative stripe rust resistance protein Yr10) (cDNA clone:J033065D18, full insert sequence),Os10g0131800 protein,Os11g0689100 protein (Fragment) Q2QZF1,A0A0P0XS32,A0A0P0Y5T0 Q2QZF1_ORYSJ,A0A0P0XS32_ORYSJ,A0A0P0Y5T0_ORYSJ OSJNBb0018L01.1 LOC_Os11g46210 Os11g0689100 OsJ_26447 OSNPB_110689100,Os10g0131800 OSNPB_100131800,Os11g0689100 OSNPB_110689100 ENOG411DSFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411DSFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0830000 protein (Pentatricopeptide repeat-containing protein-like) Q6K9T2 Q6K9T2_ORYSJ Os02g0830000 OJ1124_D06.17 OsJ_08985 OSNPB_020830000 ENOG411DSF9 OBE4,OBE3,TTA2 Q84TI3,Q94B71,F4J298 OBE4_ARATH,OBE3_ARATH,F4J298_ARATH Protein OBERON 4,Protein OBERON 3,Fibronectin type III domain protein (DUF1423) 130732,82389,99785 Protein OBERON 4,Protein OBERON 3,Fibronectin type III domain protein (DUF1423) nucleus [GO:0005634]; metal ion binding [GO:0046872]; cell fate specification [GO:0001708]; embryonic meristem initiation [GO:0090421]; embryonic pattern specification [GO:0009880] locus:2087403;,locus:2006837; AT3G63500,AT1G14740 OBERON 3-like Os03g0239200 protein (Tropomyosin, putative, expressed) (cDNA clone:J013159E06, full insert sequence),Os03g0239200 protein,Os03g0218300 protein (Fragment) Q10PC5,A0A0P0VV78,A0A0P0VV16 Q10PC5_ORYSJ,A0A0P0VV78_ORYSJ,A0A0P0VV16_ORYSJ Os03g0239200 LOC_Os03g13590 Os03g0239200 OsJ_10081 OSNPB_030239200,Os03g0239200 OSNPB_030239200,Os03g0218300 OSNPB_030218300 ENOG411DSF0 BEL1 Q38897 BEL1_ARATH Homeobox protein BEL1 homolog Female sterile. Homeotic conversion of ovules to carpel like structures. Abnormal integuments-R. Fischer-1995 FUNCTION: Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. 69493 Homeobox protein BEL1 homolog cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. locus:2177856; AT5G41410 Homeobox protein BEL1 homolog Associated with HOX family protein, expressed (Os03g0124000 protein),Associated with HOX family protein, expressed (Os10g0534900 protein) (Putative homeodomain protein) (cDNA clone:J013134A07, full insert sequence),Os06g0108900 protein Q10SF7,Q8LN25,Q0DF87 Q10SF7_ORYSJ,Q8LN25_ORYSJ,Q0DF87_ORYSJ LOC_Os03g03260 Os03g0124000 OSNPB_030124000,Os10g0534900 LOC_Os10g39030 Os10g0534900 OSJNBa0053C23.7 OSNPB_100534900,Os06g0108900 Os06g0108900 OSNPB_060108900 ENOG411DSF3 SRK2C,SRK2F Q9M9E9,Q9SMQ4 SRK2C_ARATH,SRK2F_ARATH Serine/threonine-protein kinase SRK2C (EC 2.7.11.1) (OST1-kinase-like 4) (SNF1-related kinase 2.8) (SnRK2.8),Serine/threonine-protein kinase SRK2F (EC 2.7.11.1) (OST1-kinase-like 5) (SNF1-related kinase 2.7) (SnRK2.7) No visible phenotype.,The activity of glyI in wild type and snrk2.8-1 knockout plants under control conditions and salt stress was tested. Salt treatment stimulated the activity of the enzyme in the wild type plant but less stimulation was observed in the snrk2.8-1. glyI activity was lower after salt treatment in the snrk2.8-1 but salt stress still increased the protein activity. Root growth sensitive to drought-K. Shinozaki-2004 FUNCTION: Involved in gene regulation and confers tolerance to drought and osmotic stress. {ECO:0000269|PubMed:15561775}. 2.7.11.1 38250,39775 Serine/threonine-protein kinase SRK2C (EC 2.7.11.1) (OST1-kinase-like 4) (SNF1-related kinase 2.8) (SnRK2.8),Serine/threonine-protein kinase SRK2F (EC 2.7.11.1) (OST1-kinase-like 5) (SNF1-related kinase 2.7) (SnRK2.7) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to karrikin [GO:0080167]; response to osmotic stress [GO:0006970],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:15292193}. locus:2032075;,locus:2140104; AT1G78290,AT4G40010 serine threonine-protein kinase Serine/threonine-protein kinase SAPK1 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 1) (stress-activated protein kinase 1) (OsSAPK1),Serine/threonine-protein kinase SAPK2 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 2) (stress-activated protein kinase 2) (OsSAPK2) Q75LR7,Q0D4J7 SAPK1_ORYSJ,SAPK2_ORYSJ SAPK1 Os03g0390200 LOC_Os03g27280 OOSJNBa0017N12.8 OsJ_11114,SAPK2 Os07g0622000 LOC_Os07g42940 OsJ_25167 P0594D10.134 FUNCTION: May play a role in signal transduction of hyperosmotic response.,FUNCTION: May play a role in signal transduction of hyperosmotic response (Probable). Can phosphorylate BZIP46 in vitro (PubMed:22301130). Together with ABI5, PP2C30 and PYL5, is part of an abscisic acid (ABA) signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:22071266, ECO:0000269|PubMed:22301130, ECO:0000305}. ENOG411DSF2 AP22.38 F4JPQ4 F4JPQ4_ARATH G-protein coupled receptor 43277 G-protein coupled receptor integral component of membrane [GO:0016021] locus:2115300; AT4G36440 NA Os01g0262700 protein (cDNA clone:002-184-A02, full insert sequence),Os01g0262700 protein Q5NBB6,A0A0P0V0V0 Q5NBB6_ORYSJ,A0A0P0V0V0_ORYSJ P0469E09.26-1 Os01g0262700 OSNPB_010262700,Os01g0262700 OSNPB_010262700 ENOG411DSF5 FBA5,FBA7 O65581,P22197,A0A1P8B8S7,A0A1P8B8Q8 ALFC5_ARATH,ALFC7_ARATH,A0A1P8B8S7_ARATH,A0A1P8B8Q8_ARATH Fructose-bisphosphate aldolase 5, cytosolic (AtFBA5) (EC 4.1.2.13),Fructose-bisphosphate aldolase 7, cytosolic (AtFBA7) (EC 4.1.2.13),Fructose-bisphosphate aldolase (EC 4.1.2.13) FUNCTION: Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}.,FUNCTION: Plays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4. {ECO:0000305}.,PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4. {ECO:0000256|SAAS:SAAS00336717}. ARA:AT4G26530-MONOMER;,ARA:AT4G26520-MONOMER; R-ATH-114608;R-ATH-6798695;R-ATH-70171;R-ATH-70263;R-ATH-70350; 4.1.2.13 38294,38810,38436,38635 Fructose-bisphosphate aldolase 5, cytosolic (AtFBA5) (EC 4.1.2.13),Fructose-bisphosphate aldolase 7, cytosolic (AtFBA7) (EC 4.1.2.13),Fructose-bisphosphate aldolase (EC 4.1.2.13) chloroplast [GO:0009507]; cytosol [GO:0005829]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096],cytosol [GO:0005829]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to hypoxia [GO:0001666],fructose-bisphosphate aldolase activity [GO:0004332]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Expressed in rosette leaves and cauline leaves. {ECO:0000269|PubMed:22561114}.,TISSUE SPECIFICITY: Highly expressed in flowers, and at lower levels in rosettes leaves and cauline leaves. {ECO:0000269|PubMed:22561114}. locus:2131513;,locus:2131508; AT4G26530,AT4G26520 fructose-bisphosphate aldolase Fructose-bisphosphate aldolase 1, cytoplasmic (EC 4.1.2.13) (Cytoplasmic aldolase) (cALD) (Gravity-specific protein GSC 233),Fructose-bisphosphate aldolase 3, cytoplasmic (EC 4.1.2.13) (Aldolase C-1) (AldC-1),Fructose-bisphosphate aldolase 2, cytoplasmic (EC 4.1.2.13) (Cytoplasmic aldolase-alpha) (AldC-alpha),Fructose-bisphosphate aldolase (EC 4.1.2.13),Os01g0905800 protein (Putative fructose-bisphosphate aldolase isoenzyme C-1) P17784,Q5N725,Q10A30,Q6YPF1,Q69V57,Q5N726 ALFC1_ORYSJ,ALFC3_ORYSJ,ALFC2_ORYSJ,Q6YPF1_ORYSJ,Q69V57_ORYSJ,Q5N726_ORYSJ FBA1 FBA Os05g0402700 LOC_Os05g33380 OSJNBa0035J16.18 OSJNBb0006J12.6,FBA3 Os01g0905800 LOC_Os01g67860 B1417F08.1-1,FBA2 Os10g0163340 LOC_Os10g08022 OsJ_30817,Os08g0120600 Os08g0120600 B1203H11.11 OsJ_25856 OSNPB_080120600,Os06g0608700 Os06g0608700 OSNPB_060608700 P0556B08.18,B1417F08.1-2 Os01g0905800 OsJ_04464 OSNPB_010905800 FUNCTION: Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis (By similarity). Involved in gibberellin-mediated root growth. May be regulated by CDPK13. Associates with vacuolar proton ATPase (V-ATPase) and may regulate the V-ATPase-mediated control of root cell elongation (PubMed:15821984). {ECO:0000250|UniProtKB:Q9SJQ9, ECO:0000269|PubMed:15821984}.,FUNCTION: Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}. MISCELLANEOUS: Plants silencing FBA1 display reduced root length. {ECO:0000269|PubMed:15821984}. ENOG411DSF7 CSN5A,CSN5B Q8LAZ7,Q9FVU9,A0A1P8AQF0 CSN5A_ARATH,CSN5B_ARATH,A0A1P8AQF0_ARATH COP9 signalosome complex subunit 5a (Signalosome subunit 5a) (EC 3.4.-.-) (Jun activation domain-binding homolog 1),COP9 signalosome complex subunit 5b (Signalosome subunit 5b) (EC 3.4.-.-) (Jun activation domain-binding homolog 2),COP9-signalosome 5B DISRUPTION PHENOTYPE: Short hypocotyl and open cotyledons in dark-grown seedling, accumulation of anthocyanin and expression of light-induced genes in the dark resulting from an impaired cullin deneddylation (PubMed:15923347). Severe developmental defects resulting in dwarf stature and loss of apical dominance (PubMed:17307927). Csn5a and csn5b double mutants are lethal at the seedling stage (PubMed:17307927). {ECO:0000269|PubMed:15923347, ECO:0000269|PubMed:17307927}.,DISRUPTION PHENOTYPE: No visible phenotype and no effect on the derubylation of CUL1 (PubMed:15486099, PubMed:17307927). Csn5a and csn5b double mutants are lethal at the seedling stage (PubMed:17307927). {ECO:0000269|PubMed:15486099, ECO:0000269|PubMed:17307927}. At the reproductive stage the mutants exhibit severe developmental defects that result in dwarf stature and the loss of apical dominance (52 DAG).,At the vegetative stage the csn5a plantlets are characterized by small light green and curly rosettes (12 and 14DAG) which are almost completely depleted of trichomes in contrast with wild-type.,Mutants are not lethal at the seedling stage and at a few DAG the purple cotyledons turn light green before the production of true leaves.,Seedlings have purple cotyledons.,Shorter hypocotyls in the dark shorter roots smaller flowers a decreased number of root hairs in response to jasmonic acid treatment and altered light and auxin responses.,The cellular pools of the COP9 signalosome complex subunits: CSN1 CSN3 CSN5 CSN6 CSN7 and CSN8 are reduced drastically compared with those in wild type.,csn5a-1 and csn5a-2 are virtually indistinguishable from each other in the initial few DAG starting from 8 DAG and throughout the vegetative stage the phenotype of csn5a-2 is less severe than that of csn5a-1 in terms of both rosette size and trichome density. This difference becomes particularly evident at the reproductive phase (52 DAG).,Double null homozygous mutant progeny invariably die at the seedling stage do not express detectable CSN5 proteins and are virtually identical to the null alleles of the cop/det/fus mutants.,During the first two to three DAG the double homozygous mutant progeny display the typical photomorphogenic phenotype of the fusca mutants.,In double homozygous progeny significant reduction of CSN1 CSN6 CSN7 and CSN8 and in a very slight reduction of CSN4. In the case of CSN3 the complete loss of function of CSN5 results in the accumulation of a larger and possibly modified CSN3 form whereas the normal (smaller) CSN3 form is present predominantly in wild type.,In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,Mutation is lethal in the homozygous state.,A residual derubylation activity can be observed in the double mutant seedlings.,At 6 to 7 DAG the double mutants uniformly start to form the first pair of true leaves and eventually develop into impaired small plantlets with dark red cotyledons and asymmetrical leaves.,None of the double mutants arrest at the seedling stage and even though severely compromised mutant plantlets survive to a mature stage.,Synergistic phenotype: de-etiolated fusca seedlings. Dark grown plants undergo photomorphogenesis; hypocotyl elongation cotyledon expansion anthocyanin accumulation in cotyledons.,Mutants are virtually indistinguishable from wild-type siblings in the dark and in all light conditions both at seedling and mature stages.,Significant increase (five- to sixfold) in the total amount of CSN5 with respect to the CSN5 level observed in the csn5a-2 single mutant.,Mutants are virtually indistinguishable from wild-type plants at all developmental stages (germination vegetative and reproductive).,No detectable changes in the cellular pools of COP9 signalosome complex subunits. Purple cotyledons; Small, curled, pale green rosette leaves; Dwarf; Increased branching; Small flowers; Very few trichomes; Short hypocotyl in the dark; Altered response to jasmonic acid, light, and auxin-X. Deng-2007,Abnormal root hair development; Altered response to light and auxin-C. Schwechheimer-2005 FUNCTION: Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. In the complex, it probably acts as the catalytic center that mediates the cleavage of Nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex (By similarity). The CSN complex is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. Involved in CSN's deneddylation/derubylation activity (PubMed:15486099). Required for the deneddylation of all cullins (PubMed:15923347, PubMed:17307927). Essential for the structural integrity of the CSN holocomplex (PubMed:17307927). {ECO:0000250, ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:15486099, ECO:0000269|PubMed:15923347, ECO:0000269|PubMed:17307927, ECO:0000269|PubMed:9811788}.,FUNCTION: Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. In the complex, it probably acts as the catalytic center that mediates the cleavage of Nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex (By similarity). The CSN complex is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. Not involved in CSN's deneddylation/derubylation activity (PubMed:15486099, PubMed:17307927). Essential for the structural integrity of the CSN holocomplex (PubMed:17307927). {ECO:0000250, ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:15486099, ECO:0000269|PubMed:17307927, ECO:0000269|PubMed:9811788}. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 3.4.-.- 39731,40318,9900 COP9 signalosome complex subunit 5a (Signalosome subunit 5a) (EC 3.4.-.-) (Jun activation domain-binding homolog 1),COP9 signalosome complex subunit 5b (Signalosome subunit 5b) (EC 3.4.-.-) (Jun activation domain-binding homolog 2),COP9-signalosome 5B COP9 signalosome [GO:0008180]; cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; COP9 signalosome assembly [GO:0010387]; negative regulation of photomorphogenesis [GO:0010100]; positive regulation of G2/M transition of mitotic cell cycle [GO:0010971]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]; regulation of defense response [GO:0031347]; response to auxin [GO:0009733]; specification of floral organ identity [GO:0010093],COP9 signalosome [GO:0008180]; cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; COP9 signalosome assembly [GO:0010387]; multicellular organism development [GO:0007275]; negative regulation of photomorphogenesis [GO:0010100]; positive regulation of G2/M transition of mitotic cell cycle [GO:0010971]; positive regulation of protein catabolic process [GO:0045732]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]; regulation of L-ascorbic acid biosynthetic process [GO:2000082]; response to auxin [GO:0009733] TISSUE SPECIFICITY: Ubiquitously expressed. Highly expressed in flowers and roots. Expressed at lower level in seedlings and siliques. {ECO:0000269|PubMed:9811788}. locus:2017764;,locus:2032288; AT1G22920,AT1G71230 cop9 signalosome complex subunit JUN-activation-domain-binding protein 1 (OSJNBb0022F16.7 protein) (Os04g0654700 protein) Q8H936 Q8H936_ORYSJ Jab1 Os04g0654700 OSJNBb0022F16.7 OSNPB_040654700 ENOG411DSF6 BOP1 F4IH25,A0A1P8B109 BOP1_ARATH,A0A1P8B109_ARATH Ribosome biogenesis protein BOP1 homolog (Pescadillo-interacting protein 1) (AtPEIP1) (Protein BLOCK OF CELL PROLIFERATION 1),Ribosome biogenesis protein BOP1 homolog DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:26940494}. FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression (PubMed:26940494). {ECO:0000255|HAMAP-Rule:MF_03027, ECO:0000269|PubMed:26940494}.,FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. {ECO:0000256|HAMAP-Rule:MF_03027}. R-ATH-6791226; 85383,83532 Ribosome biogenesis protein BOP1 homolog (Pescadillo-interacting protein 1) (AtPEIP1) (Protein BLOCK OF CELL PROLIFERATION 1),Ribosome biogenesis protein BOP1 homolog nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; PeBoW complex [GO:0070545]; preribosome, large subunit precursor [GO:0030687]; ribonucleoprotein complex binding [GO:0043021]; gamete generation [GO:0007276]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; regulation of cell division [GO:0051302],nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; preribosome, large subunit precursor [GO:0030687]; ribonucleoprotein complex binding [GO:0043021]; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000466]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463] locus:2063099; AT2G40360 Ribosome biogenesis protein bop1 Ribosome biogenesis protein BOP1 homolog Q0D6V7 BOP1_ORYSJ BOP1 Os07g0435400 LOC_Os07g25440 OsJ_24034 FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. {ECO:0000255|HAMAP-Rule:MF_03027}. ENOG411DTIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Os05g0173800 protein Q65WU3 Q65WU3_ORYSJ Os05g0173800 Os05g0173800 OSNPB_050173800 P0672D07.14 ENOG411DTIJ PBCP O64730,A0A1P8AY09,A0A1P8AY61,A0A1P8AY07,A0A1P8AY65 P2C26_ARATH,A0A1P8AY09_ARATH,A0A1P8AY61_ARATH,A0A1P8AY07_ARATH,A0A1P8AY65_ARATH Probable protein phosphatase 2C 26 (AtPP2C26) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 32285,24325,20769,25334,29167 Probable protein phosphatase 2C 26 (AtPP2C26) (EC 3.1.3.16),Protein phosphatase 2C family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; cellular response to light stimulus [GO:0071482]; peptidyl-threonine dephosphorylation [GO:0035970]; thylakoid membrane organization [GO:0010027],catalytic activity [GO:0003824] locus:2060822; AT2G30170 phosphatase 2C Probable protein phosphatase 2C 1 (OsPP2C01) (EC 3.1.3.16) Q942P9 P2C01_ORYSJ Os01g0164600 LOC_Os01g07090 B1189A09.48 OsJ_000491 P0701D05.3 ENOG411DTIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411DTIC MAC9.11 Q501A2,Q9FI45 Q501A2_ARATH,Q9FI45_ARATH At5g61830 (NAD(P)-binding Rossmann-fold superfamily protein),At5g51030 (Carbonyl reductase-like protein) (NAD(P)-binding Rossmann-fold superfamily protein) ARA:AT5G61830-MONOMER;,ARA:AT5G51030-MONOMER; R-ATH-211945;R-ATH-2162123; Chemical carcinogenesis (05204),Metabolic pathways (01100),Metabolism of xenobiotics by cytochrome P450 (00980),Arachidonic acid metabolism (00590) 35639,35188 At5g61830 (NAD(P)-binding Rossmann-fold superfamily protein),At5g51030 (Carbonyl reductase-like protein) (NAD(P)-binding Rossmann-fold superfamily protein) locus:2159188;,locus:2157408; AT5G61830,AT5G51030 reductase Os01g0929500 protein (Fragment),Os01g0929500 protein Q0JGD1,A3A168 Q0JGD1_ORYSJ,A3A168_ORYSJ Os01g0929500 Os01g0929500 OSNPB_010929500,Os01g0929500 OsJ_04640 OSNPB_010929500 ENOG411DTIA SURF1 Q9LP74,Q9SE51,A0A1P8ASC1,A0A1P8ASC2,F4HYG9 SURFL_ARATH,SURF1_ARATH,A0A1P8ASC1_ARATH,A0A1P8ASC2_ARATH,F4HYG9_ARATH Surfeit locus protein 1-like (Surfeit 1-like) (Cytochrome c oxidase assembly protein SURF1-like),Surfeit locus protein 1 (Surfeit 1) (Cytochrome c oxidase assembly protein SURF1) (Protein EMBRYO DEFECTIVE 3121) (Surfeit locus 1 cytochrome c oxidase biogenesis protein),SURF1-like protein Embryo defective; Cotyledon-D. Meinke-2011 FUNCTION: May be involved in the biogenesis of the COX complex. {ECO:0000250}.,FUNCTION: Probably involved in the biogenesis of the COX complex. {ECO:0000250}.,FUNCTION: Probably involved in the biogenesis of the COX complex. {ECO:0000256|RuleBase:RU363076}. 43185,39921,33285,43605,43477 Surfeit locus protein 1-like (Surfeit 1-like) (Cytochrome c oxidase assembly protein SURF1-like),Surfeit locus protein 1 (Surfeit 1) (Cytochrome c oxidase assembly protein SURF1) (Protein EMBRYO DEFECTIVE 3121) (Surfeit locus 1 cytochrome c oxidase biogenesis protein),SURF1-like protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739] locus:2198030;,locus:2088510; AT1G48510,AT3G17910 Surfeit locus SURF1-like protein,SURF1-like protein (Fragment) Q10QD6,A0A0N7KGS3 Q10QD6_ORYSJ,A0A0N7KGS3_ORYSJ LOC_Os03g10360 Os03g0200700 OSNPB_030200700,Os03g0200700 OSNPB_030200700 FUNCTION: Probably involved in the biogenesis of the COX complex. {ECO:0000256|RuleBase:RU363076}. ENOG411DTIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif GATA transcription factor 19 (OsGATA19) (Protein TIFY 1b) (OsTIFY1b) Q0DNU1 GAT19_ORYSJ GATA19 TIFY1B Os03g0734900 LOC_Os03g52450 OsJ_12477 OSJNBa0027J18.9 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. ENOG411DTIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldose 1-epimerase Glucose-6-phosphate 1-epimerase (EC 5.1.3.15) Q6Z3M0,A0A0P0WEC1 Q6Z3M0_ORYSJ,A0A0P0WEC1_ORYSJ Os08g0241600 OsJ_26549 OSJNBa0087F21.28 OSNPB_080241600 P0031C02.33,Os04g0603000 OSNPB_040603000 ENOG411DTIX SPS3 Q5HZ00 SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial (EC 2.5.1.85) (All-trans-nonaprenyl-diphosphate synthase 3 (geranylgeranyl-diphosphate specific)) (Geranyl diphosphate synthase 1) (Trans-type polyprenyl pyrophosphate synthase) (AtPPPS) DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:17877699, ECO:0000269|PubMed:21950843}. FUNCTION: May be involved in the supply of solanesyl diphosphate for ubiquinone-9 biosynthesis in mitochondria (PubMed:21950843). Synthesizes C25 to C45 medium / long-chain products depending on the type of substrate available (PubMed:21220764). Can use geranyl diphosphate, farnesyl diphosphate or geranylgeranyl diphosphate as substrates, but not dimethylallyl diphosphate (PubMed:11069698, PubMed:17877699, PubMed:21220764). {ECO:0000269|PubMed:11069698, ECO:0000269|PubMed:17877699, ECO:0000269|PubMed:21220764, ECO:0000269|PubMed:21950843}. MISCELLANEOUS: Silencing of At2g34630 decreases ubiquinone-9 biosynthesis in mitochondria but has no effect on plastoquinone-9 biosynthesis in chloroplast, maybe due to the redundancy with At1g17050. MetaCyc:AT2G34630-MONOMER; 2.5.1.85 46401 Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial (EC 2.5.1.85) (All-trans-nonaprenyl-diphosphate synthase 3 (geranylgeranyl-diphosphate specific)) (Geranyl diphosphate synthase 1) (Trans-type polyprenyl pyrophosphate synthase) (AtPPPS) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity [GO:0052924]; metal ion binding [GO:0046872]; prenyltransferase activity [GO:0004659]; trans-octaprenyltranstransferase activity [GO:0050347]; embryo development ending in seed dormancy [GO:0009793]; isoprenoid biosynthetic process [GO:0008299]; ubiquinone biosynthetic process [GO:0006744] TISSUE SPECIFICITY: Ubiquitous. Highest expression in seeds and shoot apical meristem. {ECO:0000269|PubMed:21950843}. locus:2062315; AT2G34630 geranyl diphosphate synthase Solanesyl-diphosphate synthase 1, mitochondrial (OsSPS1) (EC 2.5.1.84) (All-trans-nonaprenyl-diphosphate synthase 1 (geranyl-diphosphate specific)) Q653T6 SPS1_ORYSJ SPS1 Os06g0678200 LOC_Os06g46450 FUNCTION: Involved in the supply of solanesyl diphosphate for ubiquinone-9 biosynthesis in mitochondria. Farnesyl diphosphate is the preferred substrate. {ECO:0000269|PubMed:20421194}. ENOG411DTIS FTSH11 Q9FGM0 FTSHB_ARATH ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial (AtFTSH11) (EC 3.4.24.-) No visible change in plant growth development or pigmentation.,Highly susceptible to moderately elevated temperatures and defective in acquired thermotolerance. Lethal, pale plants at high temperature-J. Chen-2006 FUNCTION: Probable ATP-dependent zinc metallopeptidase. Involved in the assembly and/or stability of the complexes I and Involved in thermotolerance but not in high light stress resistance or in the assembly/stability of the complexes I and V of the mitochondrial oxidative phosphorylation system. {ECO:0000269|PubMed:16157880, ECO:0000269|PubMed:16972866, ECO:0000269|Ref.11}. MISCELLANEOUS: In contrast to fungi and metazoa, plant mitochondria have more than one i-AAA-like complexes. 3.4.24.B20; 3.4.24.- 88717 ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial (AtFTSH11) (EC 3.4.24.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; proteolysis [GO:0006508]; PSII associated light-harvesting complex II catabolic process [GO:0010304]; response to heat [GO:0009408] locus:2163736; AT5G53170 ATP-dependent zinc metalloprotease FtsH ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial (OsFTSH9) (EC 3.4.24.-),Os01g0618800 protein (Fragment) A2ZVG7,A0A0N7KDC0,A0A0P0V5A1 FTSH9_ORYSJ,A0A0N7KDC0_ORYSJ,A0A0P0V5A1_ORYSJ FTSH9 Os01g0618800 LOC_Os01g43150 B1040D09.10-1 B1040D09.11 OsJ_002539,Os01g0618800 OSNPB_010618800 FUNCTION: Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. ENOG411EC88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EC8X TON1 Recruiting Motif 12,TRM12 Q9CAD2,A0A1P8ANH4 Q9CAD2_ARATH,A0A1P8ANH4_ARATH Uncharacterized protein F24D7.14,Uncharacterized protein 79480,58377 Uncharacterized protein F24D7.14,Uncharacterized protein locus:2026704; AT1G63670 Protein of unknown function (DUF3741) NA NA NA NA NA NA NA ENOG411DTI9 ECR1 O65041,A0A1P8BGN7 UBA3_ARATH,A0A1P8BGN7_ARATH NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-) (RUB-activating enzyme) (Ubiquitin-activating enzyme E1-like protein),E1 C-terminal related 1 FUNCTION: Catalytic subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:10611386, ECO:0000269|PubMed:9624055}. MISCELLANEOUS: The formation of the adenylate intermediate is possible in absence of AXR1 and without the participation of Cys-215. PATHWAY: Protein modification; protein neddylation. R-ATH-8951664; 6.3.2.- 50541,44987 NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-) (RUB-activating enzyme) (Ubiquitin-activating enzyme E1-like protein),E1 C-terminal related 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; acid-amino acid ligase activity [GO:0016881]; ATP binding [GO:0005524]; NEDD8 activating enzyme activity [GO:0019781]; protein heterodimerization activity [GO:0046982]; protein neddylation [GO:0045116],integral component of membrane [GO:0016021]; NEDD8 activating enzyme activity [GO:0019781]; protein neddylation [GO:0045116] DEVELOPMENTAL STAGE: Expressed during ovules and embryo development. {ECO:0000269|PubMed:11884684}. TISSUE SPECIFICITY: Expressed in shoot, root and floral meristems, in vascular tissues of cotyledons and mature leaves, and in the stele of the root. {ECO:0000269|PubMed:11884684}. locus:2182172; AT5G19180 NEDD8-activating enzyme E1 catalytic Os01g0271500 protein (Putative UBA3) Q5NBF4 Q5NBF4_ORYSJ Os01g0271500 Os01g0271500 OsJ_01249 OSNPB_010271500 P0693B08.15 ENOG411EC8Z BPM6,BPM5 A1L4W5,Q1EBV6,A0A1I9LS59,A0A1I9LS60 BPM6_ARATH,BPM5_ARATH,A0A1I9LS59_ARATH,A0A1I9LS60_ARATH BTB/POZ and MATH domain-containing protein 6 (Protein BTB-POZ AND MATH DOMAIN 6) (AtBPM6),BTB/POZ and MATH domain-containing protein 5 (Protein BTB-POZ AND MATH DOMAIN 5) (AtBPM5),BTB-POZ and MATH domain 6 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5632684; 45748,45191,40322,39447 BTB/POZ and MATH domain-containing protein 6 (Protein BTB-POZ AND MATH DOMAIN 6) (AtBPM6),BTB/POZ and MATH domain-containing protein 5 (Protein BTB-POZ AND MATH DOMAIN 5) (AtBPM5),BTB-POZ and MATH domain 6 cytosol [GO:0005829]; nucleus [GO:0005634]; cellular response to salt stress [GO:0071472]; protein ubiquitination [GO:0016567]; response to osmotic stress [GO:0006970],cytosol [GO:0005829]; nucleus [GO:0005634]; cellular response to salt stress [GO:0071472]; cellular response to water deprivation [GO:0042631]; protein ubiquitination [GO:0016567]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15618422, ECO:0000269|PubMed:19843165}. locus:2080188;,locus:2147167; AT3G43700,AT5G21010 BTB-POZ and MATH domain 5 NA NA NA NA NA NA NA ENOG411EC8D DPBF4,EEL Q9C5Q2,A0A1P8AYT6,A0A1P8AYN2 AI5L3_ARATH,A0A1P8AYT6_ARATH,A0A1P8AYN2_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 3 (Dc3 promoter-binding factor 4) (AtDPBF4) (Protein ENHANCED EM LEVEL) (bZIP transcription factor 12) (AtbZIP12),Basic-leucine zipper (BZIP) transcription factor family protein DISRUPTION PHENOTYPE: No visible changes in phenotype. {ECO:0000269|PubMed:12084834}. FUNCTION: Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. 29618,27685,30628 ABSCISIC ACID-INSENSITIVE 5-like protein 3 (Dc3 promoter-binding factor 4) (AtDPBF4) (Protein ENHANCED EM LEVEL) (bZIP transcription factor 12) (AtbZIP12),Basic-leucine zipper (BZIP) transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. locus:2063275; AT2G41070 enhanced em level NA NA NA NA NA NA NA ENOG411EC8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EC8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PQ loop repeat NA NA NA NA NA NA NA ENOG411EC8G NFYA6,NFYA5 Q9LVJ7,Q9SYH4 NFYA6_ARATH,NFYA5_ARATH Nuclear transcription factor Y subunit A-6 (AtNF-YA-6),Nuclear transcription factor Y subunit A-5 (AtNF-YA-5) DISRUPTION PHENOTYPE: Altered response to blue light (BL) and abscisic acid (ABA). {ECO:0000269|PubMed:17322342}. Hypersensitive to drought stress. Sensitive to drought-J. Zhu-2008 FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.,FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. 34433,33774 Nuclear transcription factor Y subunit A-6 (AtNF-YA-6),Nuclear transcription factor Y subunit A-5 (AtNF-YA-5) CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; seed development [GO:0048316]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351],CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; blue light signaling pathway [GO:0009785]; embryo development ending in seed dormancy [GO:0009793]; negative regulation of transcription, DNA-templated [GO:0045892]; response to water deprivation [GO:0009414]; seed development [GO:0048316]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.,TISSUE SPECIFICITY: Expressed in the whole plant, except roots. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. locus:2088232;,locus:2014375; AT3G14020,AT1G54160 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B NA NA NA NA NA NA NA ENOG411EC8A PIM1 Q9LXU1 Q9LXU1_ARATH Cell differentiation, Rcd1-like protein (Phytochrome interacting molecule 1) (Uncharacterized protein T24H18_150) 34189 Cell differentiation, Rcd1-like protein (Phytochrome interacting molecule 1) (Uncharacterized protein T24H18_150) CCR4-NOT core complex [GO:0030015]; P-body [GO:0000932]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288] locus:2182315; AT5G12980 Cell differentiation family Rcd1-like NA NA NA NA NA NA NA ENOG411EC8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Translocon-associated protein beta (TRAPB) Os05g0103100 protein Q0DLG8 Q0DLG8_ORYSJ Os05g0103100 Os05g0103100 OSNPB_050103100 ENOG411EC8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EC8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC8H JAL22,JAL23 O80950,O80948,A0A1P8AXC4 JAL22_ARATH,JAL23_ARATH,A0A1P8AXC4_ARATH Jacalin-related lectin 22 (Myrosinase-binding protein-like At2g39310),Jacalin-related lectin 23 (Myrosinase-binding protein-like At2g39330),Jacalin-related lectin 23 DISRUPTION PHENOTYPE: Larger PYK10 complexes. {ECO:0000269|PubMed:18467340}.,DISRUPTION PHENOTYPE: Smaller PYK10 complexes. {ECO:0000269|PubMed:18467340}. FUNCTION: Inhibitor-type lectin that may regulate the correct polymerization and activation of BGLU23/PYK10 upon tissue damage. {ECO:0000269|PubMed:18467340}.,FUNCTION: Polymerizer-type lectin that may facilitate the correct polymerization and activation of BGLU23/PYK10 upon tissue damage. {ECO:0000269|PubMed:18467340}. 50463,50443,56343 Jacalin-related lectin 22 (Myrosinase-binding protein-like At2g39310),Jacalin-related lectin 23 (Myrosinase-binding protein-like At2g39330),Jacalin-related lectin 23 carbohydrate binding [GO:0030246],plasmodesma [GO:0009506]; vacuole [GO:0005773]; carbohydrate binding [GO:0030246] locus:2056138;,locus:2056128; AT2G39310,AT2G39330 jacalin-related lectin NA NA NA NA NA NA NA ENOG411EC8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isocitrate dehydrogenase NADP Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Q7F280 Q7F280_ORYSJ Os01g0654500 OsJ_02861 OSJNBa0049H05.1 OSJNBb0006H05.32 OSNPB_010654500 ENOG411EC8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-5 cytosine-specific DNA methylase NA NA NA NA NA NA NA ENOG411EC8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTI2 Q9LIQ3 Q9LIQ3_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At3g24040) 47196 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At3g24040) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375] locus:2076181; AT3G24040 Core-2/I-Branching enzyme Expressed protein (Os03g0145300 protein) Q10RU9 Q10RU9_ORYSJ Os03g0145300 LOC_Os03g05180 OSNPB_030145300 ENOG411EF29 Q9SI55 Q9SI55_ARATH At2g03850 (Late embryogenesis abundant protein (LEA) family protein) (Putative cold-regulated protein) 20578 At2g03850 (Late embryogenesis abundant protein (LEA) family protein) (Putative cold-regulated protein) chloroplast [GO:0009507] locus:2056815; AT2G03850 Inherit from euNOG: late embryogenesis abundant domain-containing protein NA NA NA NA NA NA NA ENOG411DX74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os10g0392900 protein,Os10g0392800 protein,Os10g0393700 protein,Os10g0393600 protein A0A0P0XUR0,A0A0P0XUK1,A0A0P0XTS4,A0A0P0XTQ3 A0A0P0XUR0_ORYSJ,A0A0P0XUK1_ORYSJ,A0A0P0XTS4_ORYSJ,A0A0P0XTQ3_ORYSJ Os10g0392900 OSNPB_100392900,Os10g0392800 OSNPB_100392800,Os10g0393700 OSNPB_100393700,Os10g0393600 OSNPB_100393600 ENOG411EKPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DZK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os09g0555400 protein Q0IZR0 Q0IZR0_ORYSJ Os09g0555400 Os09g0555400 OsJ_30287 OSNPB_090555400 ENOG411EKPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0147700 protein,Os02g0147700 protein (cDNA clone:001-026-B04, full insert sequence),Os02g0147700 protein (Fragment),Os02g0147100 protein (Fragment) Q6Z2Y3,Q0E3Y8,A0A0N7KEP3,A0A0P0VEM3 Q6Z2Y3_ORYSJ,Q0E3Y8_ORYSJ,A0A0N7KEP3_ORYSJ,A0A0P0VEM3_ORYSJ OJ1008_C03.26-2 Os02g0147700 P0479D12.5-2 OSNPB_020147700,Os02g0147700 Os02g0147700 OsJ_05371 OSNPB_020147700,Os02g0147700 OSNPB_020147700,Os02g0147100 OSNPB_020147100 ENOG411EKPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os11g0432600 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) Q2R5M5 Q2R5M5_ORYSJ LOC_Os11g24484 Os11g0432600 OSNPB_110432600 ENOG411EKPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DU16 T32M21_20 Q9LZ83 Q9LZ83_ARATH AT5G04420 protein (At5g04420) (Galactose oxidase/kelch repeat superfamily protein) (Uncharacterized protein T32M21_20) 56659 AT5G04420 protein (At5g04420) (Galactose oxidase/kelch repeat superfamily protein) (Uncharacterized protein T32M21_20) cytosol [GO:0005829]; nucleus [GO:0005634] locus:2184352; AT5G04420 acyl-CoA-binding domain-containing protein Acyl-CoA binding protein-like (Os02g0822800 protein) Q6K9X9 Q6K9X9_ORYSJ Os02g0822800 Os02g0822800 OJ1119_A01.25 OJ1136_C04.2 OsJ_08927 OSNPB_020822800 ENOG411DU17 UREF Q9XHZ3 UREF_ARATH Urease accessory protein F (AtUREF) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants cannot grow on medium with urea as the sole source of nitrogen. {ECO:0000269|PubMed:16244137}. No visible phenotype. Unable to sustain growth on urea as sole nitrogen source. No urease activity detected. Unable to use urea as primary nitrogen source-T. Romeis-2005 FUNCTION: Required for the maturation and activation of urease via the functional incorporation of the urease nickel metallocenter. {ECO:0000269|PubMed:16244137}. 26403 Urease accessory protein F (AtUREF) nickel cation binding [GO:0016151]; nitrogen compound metabolic process [GO:0006807]; positive regulation of urease activity [GO:1905182] locus:2036997; AT1G21840 urease accessory protein Urease accessory protein F (AtUREF),Os02g0168000 protein Q0E3L5,A0A0N7KER7 UREF_ORYSJ,A0A0N7KER7_ORYSJ UREF Os02g0168000 LOC_Os02g07150 OSJNBa0085K21,Os02g0168000 OSNPB_020168000 FUNCTION: Required for the maturation and activation of urease via the functional incorporation of the urease nickel metallocenter. {ECO:0000250}. ENOG411DU14 RIN1 Q9FMR9 RIN1_ARATH RuvB-like protein 1 (EC 3.6.4.12) (49 kDa TATA box-binding protein-interacting protein homolog) (AtTIP49a) (Ruv DNA-helicase-like protein) DISRUPTION PHENOTYPE: Gametophyte lethality. {ECO:0000269|PubMed:12062092}. Null: Female gametophyte defective; Embryo defective (inferred); Knockdown: Seedling lethal; Abnormal meristem development-J. Dangl-2002 FUNCTION: Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. Has single-stranded DNA-stimulated ATPase and ATP-dependent DNA helicase (3' to 5') activity suggesting a role in nuclear processes such as recombination and transcription (By similarity). {ECO:0000250}. R-ATH-5689880; 3.6.4.12 50323 RuvB-like protein 1 (EC 3.6.4.12) (49 kDa TATA box-binding protein-interacting protein homolog) (AtTIP49a) (Ruv DNA-helicase-like protein) chloroplast [GO:0009507]; cytosol [GO:0005829]; Ino80 complex [GO:0031011]; NuA4 histone acetyltransferase complex [GO:0035267]; nucleolus [GO:0005730]; nucleus [GO:0005634]; R2TP complex [GO:0097255]; Swr1 complex [GO:0000812]; ATP binding [GO:0005524]; ATP-dependent 5'-3' DNA helicase activity [GO:0043141]; ATP-dependent DNA helicase activity [GO:0004003]; box C/D snoRNP assembly [GO:0000492]; cell differentiation [GO:0030154]; chromatin remodeling [GO:0006338]; flower development [GO:0009908]; histone acetylation [GO:0016573]; meristem development [GO:0048507]; regulation of defense response to fungus, incompatible interaction [GO:2000072]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2176302; AT5G22330 ruvB-like RuvB-like helicase (EC 3.6.4.12) Q5QMH0,B7FAF4,Q5QMH1 Q5QMH0_ORYSJ,B7FAF4_ORYSJ,Q5QMH1_ORYSJ P0506B12.43-2 Os01g0837500 OSNPB_010837500,Os07g0178900 OsJ_23313 OSNPB_070178900,P0506B12.43-1 Os01g0837500 OsJ_04005 OSNPB_010837500 ENOG411DU15 SKU5 similar 14,sks11,sks13,SKU5 similar 12 Q9SMW3,Q9LJF2,Q9LJF1,Q9ZVV4 Q9SMW3_ARATH,Q9LJF2_ARATH,Q9LJF1_ARATH,Q9ZVV4_ARATH At1g55560 (BNH protein) (SKU5 similar 14) (Uncharacterized protein At1g55560/T5A14_2),L-ascorbate oxidase pectinesterase-like protein pollen-specific protein-like (Putative pectinesterase (Pectin methylesterase) family protein) (SKU5 similar 11),AT3g13400/MRP15_3 (BNH protein pectinesterase-like protein pollen-secific protein-like) (Putative pollen-specific protein) (SKU5 similar 13),At1g55570/T5A14_1 (SKU5 similar 12) (T5A14.1 protein) ARA:AT1G55560-MONOMER;,ARA:AT3G13390-MONOMER;,ARA:AT3G13400-MONOMER;,ARA:AT1G55570-MONOMER; 61662,61947,61654,62213 At1g55560 (BNH protein) (SKU5 similar 14) (Uncharacterized protein At1g55560/T5A14_2),L-ascorbate oxidase pectinesterase-like protein pollen-specific protein-like (Putative pectinesterase (Pectin methylesterase) family protein) (SKU5 similar 11),AT3g13400/MRP15_3 (BNH protein pectinesterase-like protein pollen-secific protein-like) (Putative pollen-specific protein) (SKU5 similar 13),At1g55570/T5A14_1 (SKU5 similar 12) (T5A14.1 protein) plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722] locus:2193899;,locus:2092845;,locus:2092865;,locus:2193894; AT1G55560,AT3G13390,AT3G13400,AT1G55570 L-ascorbate oxidase homolog Os01g0816700 protein (Putative L-ascorbate oxidase),Os05g0485900 protein,Os05g0485800 protein Q942J6,B9FJY5,A0A0P0WNX3 Q942J6_ORYSJ,B9FJY5_ORYSJ,A0A0P0WNX3_ORYSJ Os01g0816700 B1148D12.11 OSNPB_010816700,Os05g0485900 OsJ_18988 OSNPB_050485900,Os05g0485800 OSNPB_050485800 ENOG411DU12 Q93V85 WTR16_ARATH WAT1-related protein At3g02690, chloroplastic 44604 WAT1-related protein At3g02690, chloroplastic chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021] locus:2076954; AT3G02690 EamA-like transporter family Os10g0493900 protein (Fragment) Q0IWR0 Q0IWR0_ORYSJ Os10g0493900 OSNPB_100493900 ENOG411DU13 Q9LYL3,B3LFA4,A0A1I9LQR9 SYCC1_ARATH,SYCC2_ARATH,A0A1I9LQR9_ARATH Cysteine--tRNA ligase 1, cytoplasmic (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS),Cysteine--tRNA ligase 2, cytoplasmic (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS),Cysteinyl-tRNA synthetase, class Ia family protein ARA:AT3G56300-MONOMER;,ARA:AT5G38830-MONOMER; 6.1.1.16 55350,57842,43270 Cysteine--tRNA ligase 1, cytoplasmic (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS),Cysteine--tRNA ligase 2, cytoplasmic (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS),Cysteinyl-tRNA synthetase, class Ia family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; cysteine-tRNA ligase activity [GO:0004817]; metal ion binding [GO:0046872]; cysteinyl-tRNA aminoacylation [GO:0006423],cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; cysteine-tRNA ligase activity [GO:0004817]; metal ion binding [GO:0046872]; cysteinyl-tRNA aminoacylation [GO:0006423]; response to cadmium ion [GO:0046686],integral component of membrane [GO:0016021]; aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; tRNA aminoacylation for protein translation [GO:0006418] locus:2078406;,locus:2152237; AT3G56300,AT5G38830 tRNA synthetase class I (C) family protein NA NA NA NA NA NA NA ENOG411DU10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os07g0643700 protein (Putative esterase) (cDNA clone:002-138-E04, full insert sequence) Q7F1Y5 Q7F1Y5_ORYSJ OJ1003_C06.129 Os07g0643700 OSNPB_070643700 ENOG411DU11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os01g0195400 protein Q5SMX9 Q5SMX9_ORYSJ Os01g0195400 OSNPB_010195400 P0001B06.31 P0498B01.17 ENOG411DU18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Coiled-coil domain containing 147 NA NA NA NA NA NA NA ENOG411DU19 ABCB9,ABCB21,ABCB4,ABCB7 Q9M0M2,Q9M1Q9,O80725,Q9FHF1,A0A1P8AYG2,A0A1P8AYF4,A0A1P8AYL3,A0A1P8B3X8 AB9B_ARATH,AB21B_ARATH,AB4B_ARATH,AB7B_ARATH,A0A1P8AYG2_ARATH,A0A1P8AYF4_ARATH,A0A1P8AYL3_ARATH,A0A1P8B3X8_ARATH ABC transporter B family member 9 (ABC transporter ABCB.9) (AtABCB9) (Multidrug resistance protein 9) (P-glycoprotein 9),ABC transporter B family member 21 (ABC transporter ABCB.21) (AtABCB21) (Multidrug resistance protein 17) (P-glycoprotein 21),ABC transporter B family member 4 (ABC transporter ABCB.4) (AtABCB4) (Multidrug resistance protein 4) (P-glycoprotein 4),ABC transporter B family member 7 (ABC transporter ABCB.7) (AtABCB7) (Multidrug resistance protein 7) (P-glycoprotein 7),ATP binding cassette subfamily B4,p-glycoprotein 9 Although mutant seedlings display normal acropetal auxin transport in the root basipetal auxin transport is reduced by about 50%. Root waving proceeds normally in the mutant seedlings but gravitropic curvature is enhanced occurring more quickly and to a greater degree than in wild type seedlings.,mdr4-1 mutants display normal root architecture and have wild type rates of lateral root elongation.,mdr4-2 mutants display normal root architecture and have wild type rates of lateral root elongation.,The root lengths of 10-d pgp4 seedlings were 30% shorter than those of the wild type and the number of lateral roots was also significantly reduced under moderate light levels (100 to 120 mmolm2s1) using sucrose concentrations of 0.5 to 1%. Under high light or on sucrose concentrations >1.5% the root lengths and number of lateral roots observed were greater than or equal to those of the wild type. No obvious morphological differences between pgp4 and wild-type plants were observed in the aerial parts of seedlings and adult plants. Seedlings exhibited reductions in the rate of root gravitropic bending.,pgp4-1 mutants have 25% longer root hairs than wild type plants. Reduced basipetal auxin transport; Increased root gravitropism under vertical growth-E. Spalding-2007 FUNCTION: Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transport IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. {ECO:0000269|PubMed:16198350, ECO:0000269|PubMed:16243904}. ARA:AT4G18050-MONOMER;,ARA:AT3G62150-MONOMER;,ARA:AT2G47000-MONOMER;,ARA:AT5G46540-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 134366,140334,139028,136112,108744,120949,127572,135711 ABC transporter B family member 9 (ABC transporter ABCB.9) (AtABCB9) (Multidrug resistance protein 9) (P-glycoprotein 9),ABC transporter B family member 21 (ABC transporter ABCB.21) (AtABCB21) (Multidrug resistance protein 17) (P-glycoprotein 21),ABC transporter B family member 4 (ABC transporter ABCB.4) (AtABCB4) (Multidrug resistance protein 4) (P-glycoprotein 4),ABC transporter B family member 7 (ABC transporter ABCB.7) (AtABCB7) (Multidrug resistance protein 7) (P-glycoprotein 7),ATP binding cassette subfamily B4,p-glycoprotein 9 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin influx transmembrane transporter activity [GO:0010328]; auxin efflux [GO:0010315]; auxin influx [GO:0060919]; basipetal auxin transport [GO:0010540],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin influx transmembrane transporter activity [GO:0010328]; xenobiotic-transporting ATPase activity [GO:0008559]; auxin efflux [GO:0010315]; auxin influx [GO:0060919]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; gravitropism [GO:0009630]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; root hair elongation [GO:0048767],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] DEVELOPMENTAL STAGE: Highly expressed at early stages of root development. {ECO:0000269|PubMed:16198350}. TISSUE SPECIFICITY: Mostly expressed in roots, especially in the root elongation zone and lateral roots. In mature portion of the root, expressed in the epidermis and cortex. In the root elongation zone, confined to epidermis. In root tips, present in the root cap, S3 columella and epidermal cells. {ECO:0000269|PubMed:16198350, ECO:0000269|PubMed:16243904}. locus:2117656;,locus:2097978;,locus:2041434;,locus:2151496; AT4G18050,AT3G62150,AT2G47000,AT5G46540 ABC transporter B family member Os01g0695800 protein (Fragment),Os05g0137200 protein,Os01g0290700 protein (Fragment),Os05g0137100 protein (cDNA clone:002-172-B06, full insert sequence),Os05g0137200 protein (Fragment),Os01g0393400 protein,Os01g0977901 protein Q0JK51,Q5KQM4,Q0JNH5,Q5KQM6,A0A0P0WHM5,A0A0P0V2Y1,A0A0N7KEI2,A0A0P0WHR7 Q0JK51_ORYSJ,Q5KQM4_ORYSJ,Q0JNH5_ORYSJ,Q5KQM6_ORYSJ,A0A0P0WHM5_ORYSJ,A0A0P0V2Y1_ORYSJ,A0A0N7KEI2_ORYSJ,A0A0P0WHR7_ORYSJ Os01g0695800 Os01g0695800 OSNPB_010695800,Os05g0137200 Os05g0137200 OJ1127_B08.11 OSNPB_050137200,Os01g0290700 Os01g0290700 OSNPB_010290700,Os05g0137100 OJ1127_B08.9 OSNPB_050137100,Os05g0137200 OSNPB_050137200,Os01g0393400 OSNPB_010393400,Os01g0977901 OSNPB_010977901 ENOG411DU1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os02g0729100 protein Q0DXX0 Q0DXX0_ORYSJ Os02g0729100 Os02g0729100 OSNPB_020729100 ENOG411DU1G NEAP2 F4K1B4,A0A1P8BB41,A0A1P8BB47 NEAP2_ARATH,A0A1P8BB41_ARATH,A0A1P8BB47_ARATH Nuclear envelope-associated protein 2 (AtNEAP2),Myosin heavy chain, cardiac protein 38675,41405,33943 Nuclear envelope-associated protein 2 (AtNEAP2),Myosin heavy chain, cardiac protein nuclear envelope [GO:0005635]; nucleoplasm [GO:0005654]; protein self-association [GO:0043621] locus:2148448; AT5G26770 NA Os05g0135900 protein (cDNA clone:001-101-A02, full insert sequence),Os01g0292700 protein Q75L44,A0A0P0V1F0 Q75L44_ORYSJ,A0A0P0V1F0_ORYSJ Os05g0135900 Os05g0135900 OJ1127_B08.2 OsJ_17031 OSNPB_050135900 P0519E07.16,Os01g0292700 OSNPB_010292700 ENOG411DU1D 4CLL1,SCAR4 Q9LQ12,Q5XPJ6,A0A1P8BBH5,A0A1P8BBE9,A0A1P8BBE8,A0A1P8BBE6,A0A1P8BBE7,A0A1P8BBE5 4CLL1_ARATH,SCAR4_ARATH,A0A1P8BBH5_ARATH,A0A1P8BBE9_ARATH,A0A1P8BBE8_ARATH,A0A1P8BBE6_ARATH,A0A1P8BBE7_ARATH,A0A1P8BBE5_ARATH 4-coumarate--CoA ligase-like 1 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 10) (At4CL10),Protein SCAR4 (AtSCAR4) (Protein WAVE3),SCAR family protein 4 pollen development arrested after released from tetrads free microspores were devoid of exine layer completely absence of pollen grains at anther maturity completely male sterile,Phenotype not described. Completely sterile-C. Douglas-2009 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex. Regulates trichome branch positioning and expansion. {ECO:0000269|PubMed:15316111}. MetaCyc:AT1G62940-MONOMER; 6.2.1.- 59169,128618,113965,113012,110164,127664,124817,100183 4-coumarate--CoA ligase-like 1 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 10) (At4CL10),Protein SCAR4 (AtSCAR4) (Protein WAVE3),SCAR family protein 4 cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; long-chain fatty acid-CoA ligase activity [GO:0004467]; medium-chain fatty acid-CoA ligase activity [GO:0031956]; fatty-acyl-CoA biosynthetic process [GO:0046949]; sporopollenin biosynthetic process [GO:0080110],chloroplast [GO:0009507]; cytoskeleton [GO:0005856]; plastoglobule [GO:0010287]; SCAR complex [GO:0031209]; actin binding [GO:0003779]; actin cytoskeleton organization [GO:0030036]; positive regulation of actin nucleation [GO:0051127],cytoskeleton [GO:0005856]; actin cytoskeleton organization [GO:0030036] TISSUE SPECIFICITY: Mostly confined to anther tapetal cells. {ECO:0000269|PubMed:23632852}.,TISSUE SPECIFICITY: Expressed in expanding cotyledons, expanding leaves and expanding siliques containing developing embryos. Detected in unopened flower buds and in the expanding tip region of roots. Reduced expression in mature leaves. {ECO:0000269|PubMed:15534215}. locus:2015499;,locus:2149820; AT1G62940,AT5G01730 4-coumarate--CoA ligase-like 4-coumarate--CoA ligase-like 9 (EC 6.2.1.-),Os04g0310800 protein (Fragment) Q7XXL2,A0A0P0W8V4 4CLL9_ORYSJ,A0A0P0W8V4_ORYSJ 4CLL9 Os04g0310700 LOC_Os04g24530 OsJ_013660 OSJNBa0033H08.6,Os04g0310800 OSNPB_040310800 ENOG411DU1E AtSLP1,MJP23.8 Q93VP9,Q9LVW0 Q93VP9_ARATH,Q9LVW0_ARATH SPFH/Band 7/PHB domain-containing membrane-associated protein family (Stomatin-like protein) (Uncharacterized protein At4g27585),At5g54100 (SPFH/Band 7/PHB domain-containing membrane-associated protein family) (Similarity to stomatin like protein) (Uncharacterized protein At5g54100/MJP23_8) 45020,43607 SPFH/Band 7/PHB domain-containing membrane-associated protein family (Stomatin-like protein) (Uncharacterized protein At4g27585),At5g54100 (SPFH/Band 7/PHB domain-containing membrane-associated protein family) (Similarity to stomatin like protein) (Uncharacterized protein At5g54100/MJP23_8) membrane [GO:0016020]; mitochondrion [GO:0005739]; zinc ion binding [GO:0008270]; mitochondrial respiratory chain supercomplex assembly [GO:0097250],membrane [GO:0016020]; mitochondrion [GO:0005739] locus:505006523;,locus:2166577; AT4G27585,AT5G54100 Band 7 family protein Os08g0158500 protein (Putative Band 7 protein) (cDNA clone:001-010-A11, full insert sequence),Os08g0158500 protein,Os08g0161100 protein (Fragment) Q7EZD2,A0A0P0XC11,A0A0P0XC31 Q7EZD2_ORYSJ,A0A0P0XC11_ORYSJ,A0A0P0XC31_ORYSJ P0498E12.110 Os08g0158500 OsJ_26114 OSNPB_080158500,Os08g0158500 OSNPB_080158500,Os08g0161100 OSNPB_080161100 ENOG411DU1B KINUC,MRH2 Q9SV36,A0A1I9LP88 KINUC_ARATH,A0A1I9LP88_ARATH Kinesin-like protein KIN-UC (AtKINUc) (Protein ARMADILLO REPEAT KINESIN1) (Protein ARMADILLO REPEAT-CONTAINING KINESIN 1) (Protein CA-ROP2 ENHANCER 1) (Protein MORPHOGENESIS OF ROOT HAIR 2),Kinesin-like protein DISRUPTION PHENOTYPE: Wavy growth phenotype with altered root hairs displaying multiple tips and branches (PubMed:18539780, PubMed:24400013). Reduced microtubules catastrophe frequency and growth rates (PubMed:25159991). {ECO:0000269|PubMed:18539780, ECO:0000269|PubMed:24400013, ECO:0000269|PubMed:25159991}. Wavy and branched hairs Wavy, branched root hairs-G. Wasteneys-2008 FUNCTION: Acts as a plus-end microtubule-dependent motor protein (PubMed:25159991). Involved in the control of root hair tip growth by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules (PubMed:17957256, PubMed:17971038, PubMed:24400013, PubMed:25159991). In vitro, binds to polymerized actin through ARM repeats, and to polymerized tubulin through N-terminal motor domain (PubMed:17957256). {ECO:0000269|PubMed:17957256, ECO:0000269|PubMed:17971038, ECO:0000269|PubMed:24400013, ECO:0000269|PubMed:25159991}. 117375,105067 Kinesin-like protein KIN-UC (AtKINUc) (Protein ARMADILLO REPEAT KINESIN1) (Protein ARMADILLO REPEAT-CONTAINING KINESIN 1) (Protein CA-ROP2 ENHANCER 1) (Protein MORPHOGENESIS OF ROOT HAIR 2),Kinesin-like protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; spindle [GO:0005819]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018]; regulation of microtubule-based process [GO:0032886]; root development [GO:0048364],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018]; regulation of microtubule-based process [GO:0032886]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed in young root hair-forming cells and in root hair-producing cells at the boundary between the hypocotyl and root. Expressed in cotyledons, young leaves, trichomes and flowers. {ECO:0000269|PubMed:17957256, ECO:0000269|PubMed:17971038, ECO:0000269|PubMed:25159991}. AT3G54870 Armadillo repeat-containing kinesin-like protein Kinesin-like protein KIN-UA (Protein ARMADILLO REPEAT KINESIN1) Q0DV28 KINUA_ORYSJ KINUA Os03g0152900 LOC_Os03g05820 ENOG411DU1C CLPR4 Q8LB10 CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic (ClpR4) (Protein HAPPY ON NORFLURAZON 5) DISRUPTION PHENOTYPE: Embryo lethal (Ref.9). Delayed embryogenesis and albino embryos, with seedling development blocked in the cotyledon stage (PubMed:19525416). Under heterotrophic growth conditions, seedlings develop into small albino to virescent seedlings (PubMed:19525416). {ECO:0000269|PubMed:19525416, ECO:0000303|Ref.9}. Seedling lethal without exogenous sucrose; Pigment defective embryo-K. Wijk-2009 FUNCTION: Involved in plastid protein homeostasis. {ECO:0000269|PubMed:21208309}. 33440 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic (ClpR4) (Protein HAPPY ON NORFLURAZON 5) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; plastid stroma [GO:0009532]; serine-type endopeptidase activity [GO:0004252]; regulation of gene expression [GO:0010468]; response to reactive oxygen species [GO:0000302] locus:2130449; AT4G17040 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit Q0JNQ7 Q0JNQ7_ORYSJ Os01g0271400 Os01g0271400 OSNPB_010271400 ENOG411DU1A Q9M9G1 Q9M9G1_ARATH F14O23.23 protein (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At1g71850) 53880 F14O23.23 protein (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At1g71850) mitochondrion [GO:0005739]; hydrolase activity [GO:0016787] locus:2012981; AT1G71850 Plant organelle RNA recognition domain Expressed protein (Os03g0646200 protein) Q10G25 Q10G25_ORYSJ Os03g0646200 LOC_Os03g44430 Os03g0646200 OSNPB_030646200 ENOG411DU1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0820400 protein (Fragment) A0A0P0V9Q5 A0A0P0V9Q5_ORYSJ Os01g0820400 OSNPB_010820400 ENOG411DU1M HST1,HST Q0WP44,A0A1I9LRW7 HASTY_ARATH,A0A1I9LRW7_ARATH Protein HASTY 1 (Protein HASTY),ARM repeat superfamily protein DISRUPTION PHENOTYPE: Reduced size of roots and shoot lateral organs. Accelerated vegetative phase change. Increased adaxial trichome density. Disruption of phyllotaxis of the inflorescence. Reduced fertility. Reduced levels of several miRNAs and increased levels of their targeted transcripts. {ECO:0000269|PubMed:12620976, ECO:0000269|PubMed:15738428}. leaves up-rolled precocious expression of adult traits reduced leaf number small root system reduced fertility as both a male and female parent. Short hypocotyl and primary root; Small leaves, sepals, and petals; Few, upward-bending leaves; Abnormal phyllotaxy; Reduced fertility; Early vegetative phase change; Late flowering under short days; Large, rounded SAM; Dark-grown seedlings on sucrose: Open apical hook; Abnormal cotyledon positioning-R. Poethig-2002 FUNCTION: Nucleocytoplasmic transporter involved in the nuclear export of microRNAs (miRNAs). Required for several miRNAs accumulation. Specifically required for miR156 accumulation which targets SPL3, SPL4 and SPL5 transcription factors. Involved in plant development through its role in miRNAs processing. Required for vegetative phase change and vegetative to reproductive phase transition. Functionally dependent on RAN1 binding. Does not seem to be involved in small interfering RNAs (siRNAs) processing. {ECO:0000269|PubMed:12620976, ECO:0000269|PubMed:15738428, ECO:0000269|PubMed:16914499}. 133128,133256 Protein HASTY 1 (Protein HASTY),ARM repeat superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA nuclear export complex [GO:0042565]; nuclear export signal receptor activity [GO:0005049]; RNA binding [GO:0003723]; leaf morphogenesis [GO:0009965]; negative regulation of flower development [GO:0009910]; polarity specification of adaxial/abaxial axis [GO:0009944]; pre-miRNA export from nucleus [GO:0035281]; regulation of protein export from nucleus [GO:0046825]; root development [GO:0048364]; shoot system development [GO:0048367],nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots, leaves and floral buds. {ECO:0000269|PubMed:12620976}. locus:2114784; AT3G05040 Exportin 1-like protein Os01g0363900 protein (Putative HASTY) (cDNA clone:J013151I23, full insert sequence) Q5ZDB2 Q5ZDB2_ORYSJ Os01g0363900 OSNPB_010363900 P0503E05.14 ENOG411DU1J AVT6E Q9M8L9 AVT6E_ARATH Amino acid transporter AVT6E (AtAvt6E) 52958 Amino acid transporter AVT6E (AtAvt6E) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2198968; AT1G80510 amino acid transporter Amino acid transporter-like protein (Os06g0644700 protein) Q67WP1 Q67WP1_ORYSJ Os06g0644700 Os06g0644700 OSNPB_060644700 P0017B12.17 ENOG411DU1K MXC9.22 Q9FMN8 Q9FMN8_ARATH At5g12260/MXC9_22 (Glycosyltransferase family protein 2) (Transferring glycosyl group transferase) 71446 At5g12260/MXC9_22 (Glycosyltransferase family protein 2) (Transferring glycosyl group transferase) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2177013; AT5G12260 NA OSJNBa0004B13.7 protein (Os01g0283000 protein) Q9ARZ1 Q9ARZ1_ORYSJ OSJNBa0004B13.7 Os01g0283000 OsJ_01332 OSNPB_010283000 P0581F09.17 ENOG411DU1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL18 (Protein YELLOW STRIPE LIKE 18) (OsYSL18) Q941V3 YSL18_ORYSJ YSL18 Os01g0829900 LOC_Os01g61390 B1088C09.39 P0446G04.12 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DU1I Q3E7I6,Q9FPE4,Q38894,P0C8Z7 GDL11_ARATH,GDL12_ARATH,GDL13_ARATH,GDL91_ARATH GDSL esterase/lipase At1g28650 (EC 3.1.1.-) (Extracellular lipase At1g28650),GDSL esterase/lipase At1g28660 (EC 3.1.1.-) (Extracellular lipase At1g28660),GDSL esterase/lipase At1g28670 (EC 3.1.1.-) (Extracellular lipase At1g28670),GDSL esterase/lipase At1g28640 (EC 3.1.1.-) (Extracellular lipase At1g28640) ARA:AT1G28660-MONOMER;,ARA:AT1G28670-MONOMER;,ARA:AT1G28640-MONOMER; 3.1.1.49; 3.1.1.- 42842,42034,42427,43509 GDSL esterase/lipase At1g28650 (EC 3.1.1.-) (Extracellular lipase At1g28650),GDSL esterase/lipase At1g28660 (EC 3.1.1.-) (Extracellular lipase At1g28660),GDSL esterase/lipase At1g28670 (EC 3.1.1.-) (Extracellular lipase At1g28670),GDSL esterase/lipase At1g28640 (EC 3.1.1.-) (Extracellular lipase At1g28640) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2018718;,locus:2018703;,locus:2018693; AT1G28650,AT1G28660,AT1G28670,AT1G28640 GDSL esterase lipase Os01g0612900 protein (cDNA, clone: J100059F11, full insert sequence) A2ZVC7 A2ZVC7_ORYSJ Os01g0612900 OsJ_02589 OSNPB_010612900 ENOG411DU1V AT1G38065.2,AT1G35510.1,AT2G01480.1,T18N24.40,AT1G38131.1 A0A1P8ANY0,Q8H1E6,Q9ZVF7,Q8LNP3,Q8GUM0,A0A1P8APU4,A0A1P8APV2,A0A1P8AZ80,F4HXW9 A0A1P8ANY0_ARATH,Q8H1E6_ARATH,Q9ZVF7_ARATH,Q8LNP3_ARATH,Q8GUM0_ARATH,A0A1P8APU4_ARATH,A0A1P8APV2_ARATH,A0A1P8AZ80_ARATH,F4HXW9_ARATH O-fucosyltransferase family protein,O-fucosyltransferase family protein (Putative growth regulator),Esmeralda 1 (O-fucosyltransferase family protein) (Similar to axi 1 protein) (Similar to axi 1 protein from Nicotiana tabacum),Growth regulator-related protein (O-fucosyltransferase family protein),O-fucosyltransferase family protein (Uncharacterized protein At1g38131) FUNCTION: Glycosyltransferase that plays a role in cell adhesion. {ECO:0000269|PubMed:27317803}. 51804,63766,64549,52926,66493,50212,47037,60108,63408 O-fucosyltransferase family protein,O-fucosyltransferase family protein (Putative growth regulator),Esmeralda 1 (O-fucosyltransferase family protein) (Similar to axi 1 protein) (Similar to axi 1 protein from Nicotiana tabacum),Growth regulator-related protein (O-fucosyltransferase family protein),O-fucosyltransferase family protein (Uncharacterized protein At1g38131) transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2014666;,locus:2049527;,locus:1005716710;,locus:504956200;,locus:2006852; AT1G35510,AT2G01480,AT1G38065,AT1G38131,AT1G14970 DUF246 domain-containing protein Growth regulator protein, putative, expressed (Os12g0174100 protein),Os01g0841200 protein (Fragment),Os11g0176300 protein,Os05g0459600 protein Q2QX12,Q0JHU9,A0A0P0XZJ0,A0A0P0WN84 Q2QX12_ORYSJ,Q0JHU9_ORYSJ,A0A0P0XZJ0_ORYSJ,A0A0P0WN84_ORYSJ LOC_Os12g07540 Os12g0174100 OSNPB_120174100,Os01g0841200 Os01g0841200 OSNPB_010841200,Os11g0176300 OSNPB_110176300,Os05g0459600 OSNPB_050459600 ENOG411DU1W DIM Q39085 DIM_ARATH Delta(24)-sterol reductase (EC 1.3.1.72) (Cell elongation protein DIMINUTO) (Cell elongation protein Dwarf1) (Protein CABBAGE1) (Protein ENHANCED VERY-LOW-FLUENCE RESPONSE 1) DISRUPTION PHENOTYPE: Dwarf and reduced fertility. {ECO:0000269|PubMed:10069828}. Dwarf; Severely reduced fertility; Low brassinosteroid levels-N. Chua-1998 FUNCTION: Plays a critical role in the general process of plant cell elongation. Involved in the synthesis of campesterol, an early precursor of brassinolide. Required for the conversion of 24-methylenecholesterol to campesterol and for the conversion of isofucosterol to sitosterol. Necessary for both the isomerization and reduction of 24-methylenecholesterol. Regulate indirectly phytochrome-mediated light responses through the modulation of brassinosteroid biosynthesis. {ECO:0000269|PubMed:10069828, ECO:0000269|PubMed:11788763, ECO:0000269|PubMed:9761794}. ARA:AT3G19820-MONOMER;MetaCyc:AT3G19820-MONOMER; R-ATH-6807047;R-ATH-6807062; 1.3.1.72 65394 Delta(24)-sterol reductase (EC 1.3.1.72) (Cell elongation protein DIMINUTO) (Cell elongation protein Dwarf1) (Protein CABBAGE1) (Protein ENHANCED VERY-LOW-FLUENCE RESPONSE 1) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; calmodulin binding [GO:0005516]; delta24-sterol reductase activity [GO:0050614]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; brassinosteroid biosynthetic process [GO:0016132]; lignin metabolic process [GO:0009808]; plant-type secondary cell wall biogenesis [GO:0009834]; unidimensional cell growth [GO:0009826] locus:2092276; AT3G19820 FAD binding domain Os10g0397400 protein (Fragment) Q0IXV0 Q0IXV0_ORYSJ Os10g0397400 OSNPB_100397400 ENOG411DU1T TPR3 Q8RXN1 Q8RXN1_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g04190) 37180 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g04190) cytosol [GO:0005829] locus:2020240; AT1G04190 Tetratricopeptide repeat Os12g0604800 protein (Tetratricopeptide repeat protein, putative, expressed) (cDNA clone:J033030G12, full insert sequence) Q2QMH0 Q2QMH0_ORYSJ LOC_Os12g41190 Os12g0604800 OsJ_36789 OSNPB_120604800 ENOG411DU1U NPF6.4 Q9LVE0 PTR33_ARATH Protein NRT1/ PTR FAMILY 6.4 (AtNPF6.4) (Nitrate transporter 1.3) FUNCTION: Low-affinity nitrate transporter. {ECO:0000250}. R-ATH-427975;R-ATH-6798695; 65246 Protein NRT1/ PTR FAMILY 6.4 (AtNPF6.4) (Nitrate transporter 1.3) integral component of membrane [GO:0016021]; symporter activity [GO:0015293]; nitrate assimilation [GO:0042128] TISSUE SPECIFICITY: Expressed in leaves, flowers and siliques. Detected in leaves. {ECO:0000269|PubMed:17481610}. locus:2089935; AT3G21670 Nitrate transporter Os02g0580900 protein (Putative RCH2 protein) (cDNA clone:J013113P19, full insert sequence),Os04g0464400 protein (Fragment) Q6EP35,A0A0N7KJ69 Q6EP35_ORYSJ,A0A0N7KJ69_ORYSJ B1267B06.37-1 OJ1115_A05.12-1 Os02g0580900 OsJ_07274 OSNPB_020580900,Os04g0464400 OSNPB_040464400 ENOG411DU1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thiamine pyrophosphate enzyme central domain Os01g0160100 protein (Putative pyruvate decarboxylase) (Similar to Zea mays mRNA for pyruvate decarboxylase) Q9LGL5 Q9LGL5_ORYSJ Os01g0160100 OsJ_00466 OSNPB_010160100 P0041E11.26 ENOG411DU1S Q9LVQ4 Y5586_ARATH WEB family protein At5g55860 72431 WEB family protein At5g55860 cytosol [GO:0005829]; plasma membrane [GO:0005886]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2176625; AT5G55860 Pfam:DUF827 Myosin heavy chain, putative, expressed (Os12g0271600 protein) (cDNA clone:J023050F09, full insert sequence),Os12g0271600 protein (Fragment) Q2QU66,A0A0P0Y911 Q2QU66_ORYSJ,A0A0P0Y911_ORYSJ Os12g0271600 LOC_Os12g17310 Os12g0271600 OSNPB_120271600,Os12g0271600 OSNPB_120271600 ENOG411DU1P F4IWG2,F4IWG3 F4IWG2_ARATH,F4IWG3_ARATH Hydrolases, acting on ester bond 124544,120375 Hydrolases, acting on ester bond endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; hydrolase activity, acting on ester bonds [GO:0016788],integral component of membrane [GO:0016021]; hydrolase activity, acting on ester bonds [GO:0016788] locus:2086513; AT3G27325 PGAP1-like protein GPI inositol-deacylase (EC 3.1.-.-) Q67TV0 Q67TV0_ORYSJ Os09g0266400 Os09g0266400 B1012G11.44 OSNPB_090266400 FUNCTION: Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins. {ECO:0000256|RuleBase:RU365011}. ENOG411DU1Q LRR-RLK Q9SVG8 Q9SVG8_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein AT4g20790) (Uncharacterized protein F21C20.140) 59726 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein AT4g20790) (Uncharacterized protein F21C20.140) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2121499; AT4G20790 Leucine-rich repeat family protein NA NA NA NA NA NA NA ENOG411DU1Z NCED9,NCED3,NCED5 Q9M9F5,Q9LRR7,Q9C6Z1 NCED9_ARATH,NCED3_ARATH,NCED5_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic (AtNCED9) (EC 1.13.11.51),9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic (AtNCED3) (EC 1.13.11.51) (Protein SALT TOLERANT 1),Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic (AtNCED5) (EC 1.13.11.51) DISRUPTION PHENOTYPE: Plants exhibit abscisic-acid-deficient phenotypes in seeds, but not in vegetative tissues. {ECO:0000269|PubMed:16412079}.,DISRUPTION PHENOTYPE: Plants show enhanced germination on salt and hypersensitivity to desication and LiCl. {ECO:0000269|PubMed:11532178}. No visible phenotype was observed during vegetative stage. When germinated on medium supplemented with paclobutrazol germination rate was higher in double mutant seeds than in the single mutants or wild type i.e. paclobutrazol resistance was enhanced in double mutant seeds. Dormancy was reduced in double mutants and levels of ABA in the seeds were up to 18% lover than in the wild type or single mutants.,Seed germination in the dark after far red light treatment was almost completely suppressed as in the case of wild type.,Double mutants were indistinguishable from bps1 single mutants.,Hypersensitivity to nonionic osmotic stress induced by sorbitol.,More sensitive to drought stress than wildtype (tested after a 15-day lack of water supply).,Unlike wildtype germination of mutant seedlings was severely reduced when grown on sorbitol-containing media. Plants become increasingly chlorotic in corrolation with the sorbitol concentration. Low ABA levels; Germination resistant to paclobutrazol (inhibitor of GA synthesis)-A. Marion-Poll-2006,Insensitive to potassium and calcium; Sensitive to lithium-A. Maggio-2004 FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. Contributes probably to abscisic acid synthesis for the induction of seed dormancy. {ECO:0000269|PubMed:11532178, ECO:0000269|PubMed:16412079}.,FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids, in response to water stress. {ECO:0000269|PubMed:11532178, ECO:0000269|PubMed:15466233}.,FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids (By similarity). {ECO:0000250}. MISCELLANEOUS: Overexpression of NCED3 results in increased accumulation of abscisic acid and resistance to water stress. MetaCyc:AT1G78390-MONOMER;,ARA:AT3G14440-MONOMER;MetaCyc:AT3G14440-MONOMER;,ARA:AT1G30100-MONOMER; 1.13.11.51; 1.13.11.51 73015,65857,65337 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic (AtNCED9) (EC 1.13.11.51),9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic (AtNCED3) (EC 1.13.11.51) (Protein SALT TOLERANT 1),Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic (AtNCED5) (EC 1.13.11.51) chloroplast stroma [GO:0009570]; 9-cis-epoxycarotenoid dioxygenase activity [GO:0045549]; metal ion binding [GO:0046872]; abscisic acid biosynthetic process [GO:0009688]; seed dormancy process [GO:0010162],chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; 9-cis-epoxycarotenoid dioxygenase activity [GO:0045549]; metal ion binding [GO:0046872]; abscisic acid biosynthetic process [GO:0009688]; hyperosmotic salinity response [GO:0042538]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414],chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; 9-cis-epoxycarotenoid dioxygenase activity [GO:0045549]; metal ion binding [GO:0046872]; abscisic acid biosynthetic process [GO:0009688]; response to water deprivation [GO:0009414]; seed dormancy process [GO:0010162] DEVELOPMENTAL STAGE: Expressed in seeds at early and mid-maturation stages. {ECO:0000269|PubMed:16412079}.,DEVELOPMENTAL STAGE: Expressed at later stages of seed maturation. {ECO:0000269|PubMed:16412079}. TISSUE SPECIFICITY: Expressed in developing siliques, embryo and endosperm. {ECO:0000269|PubMed:12834401, ECO:0000269|PubMed:16412079}.,TISSUE SPECIFICITY: Localized in roots, leaves, stems, empty silique envelopes and seeds. Expressed at the point of organ attachment and the abscission zones in the plant. {ECO:0000269|PubMed:12834401, ECO:0000269|PubMed:15466233, ECO:0000269|PubMed:16412079}.,TISSUE SPECIFICITY: Detected only in seeds. {ECO:0000269|PubMed:12834401, ECO:0000269|PubMed:16412079}. locus:2032085;,locus:2091652;,locus:2202492; AT1G78390,AT3G14440,AT1G30100 9-cis-epoxy-carotenoid dioxygenase 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic (OsNCED4) (EC 1.13.11.51),9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic (OsNCED3) (EC 1.13.11.51) Q69NX5,Q5MBR5 NCED4_ORYSJ,NCED3_ORYSJ NCED4 Os07g0154100 LOC_Os07g05940 OsJ_23132 OSJNBb0050B07.21,NCED3 Os03g0645900 LOC_Os03g44380 OsJ_11896 FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. {ECO:0000250|UniProtKB:O24592}. ENOG411DU1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DU1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed (Os03g0692000 protein) (Putative Core-2/I-Branching enzyme) Q6AV49 Q6AV49_ORYSJ LOC_Os03g48560 Os03g0692000 OSJNBb0101N11.12 OSNPB_030692000 ENOG411EKP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMBJ JMJ16,PKDM7D C0SUT9,A0A1P8AMS3 JMJ16_ARATH,A0A1P8AMS3_ARATH Putative lysine-specific demethylase JMJ16 (EC 1.14.11.-) (Jumonji domain-containing protein 16) (Lysine-specific histone demethylase JMJ16) (Protein JUMONJI 16),Transcription factor jumonji (Jmj) family protein / zinc finger (C5HC2 type) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20202164}. FUNCTION: May function as histone H3 lysine demethylase and be involved in regulation of gene expression. {ECO:0000250}. R-ATH-3214842; 1.14.11.- 134993,136400 Putative lysine-specific demethylase JMJ16 (EC 1.14.11.-) (Jumonji domain-containing protein 16) (Lysine-specific histone demethylase JMJ16) (Protein JUMONJI 16),Transcription factor jumonji (Jmj) family protein / zinc finger (C5HC2 type) family protein nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ferrous iron binding [GO:0008198]; histone demethylase activity (H3-K4 specific) [GO:0032453]; negative regulation of gene expression, epigenetic [GO:0045814]; positive regulation of growth rate [GO:0040010] locus:2025635; AT1G08620 Transcription factor NA NA NA NA NA NA NA ENOG411EMBK MQD22.4 F4KIX0,A0A1P8BAS6 F4KIX0_ARATH,A0A1P8BAS6_ARATH Transcription factor jumonji (Jmj) family protein / zinc finger (C5HC2 type) family protein R-ATH-3214842;R-ATH-5693565; 88821,72477 Transcription factor jumonji (Jmj) family protein / zinc finger (C5HC2 type) family protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200],nucleus [GO:0005634] locus:2170982; AT5G46910 jumonji domain protein NA NA NA NA NA NA NA ENOG411EMBA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubisco LSMT substrate-binding NA NA NA NA NA NA NA ENOG411EMBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubisco LSMT substrate-binding Os12g0236900 protein (SET domain containing protein, expressed) Q2QVA7 Q2QVA7_ORYSJ Os12g0236900 LOC_Os12g13460 Os12g0236900 OSNPB_120236900 ENOG411EMBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubisco LSMT substrate-binding NA NA NA NA NA NA NA ENOG411EMBF Q501D3,A0A1P8ATV6,A0A1P8ATT8,A0A1P8ATS4,F4HU79 Q501D3_ARATH,A0A1P8ATV6_ARATH,A0A1P8ATT8_ARATH,A0A1P8ATS4_ARATH,F4HU79_ARATH At1g01920 (SET domain-containing protein),SET domain-containing protein 61973,49100,58554,57270,64673 At1g01920 (SET domain-containing protein),SET domain-containing protein protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026] locus:2025477; AT1G01920 SET domain-containing protein Os06g0127200 protein (SET domain-containing protein-like) Q5VRK0 Q5VRK0_ORYSJ Os06g0127200 OsJ_19962 OSJNBa0038F22.14 OSNPB_060127200 P0425F02.48 ENOG411EMBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles (By similarity) Expressed protein (Os03g0187700 protein) (cDNA, clone: J075142H08, full insert sequence) Q8H7P3 Q8H7P3_ORYSJ OJ1217B09.3 LOC_Os03g08870 Os03g0187700 OSNPB_030187700 ENOG411EMBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EMBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EMBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EMB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YTH domain-containing protein 1-like NA NA NA NA NA NA NA ENOG411EA08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0694000 protein (Fragment),Os01g0694100 protein Q0JK65,A0A0P0V6V4 Q0JK65_ORYSJ,A0A0P0V6V4_ORYSJ Os01g0694000 Os01g0694000 OSNPB_010694000,Os01g0694100 OSNPB_010694100 ENOG411EA09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein Os08g0328600 protein (cDNA, clone: J065118H17, full insert sequence),F-box domain containing protein, expressed (Os11g0642500 protein),F-box domain containing protein, expressed (Os11g0642100 protein),F-box domain containing protein, expressed (Os11g0538400 protein),F-box domain containing protein (Os11g0642000 protein),Os11g0538700 protein,Os02g0487500 protein,Os08g0330700 protein,Os11g0642300 protein,Os11g0641900 protein Q6Z0G9,Q2R0K2,Q2R0K5,Q2R344,Q2R0K8,A0A0N7KT11,A0A0P0VJA1,A0A0P0XEE6,A0A0N7KT98,A0A0P0Y4Q1 Q6Z0G9_ORYSJ,Q2R0K2_ORYSJ,Q2R0K5_ORYSJ,Q2R344_ORYSJ,Q2R0K8_ORYSJ,A0A0N7KT11_ORYSJ,A0A0P0VJA1_ORYSJ,A0A0P0XEE6_ORYSJ,A0A0N7KT98_ORYSJ,A0A0P0Y4Q1_ORYSJ Os08g0328600 OsJ_26905 OSJNBa0049I01.26 OSNPB_080328600 P0670E08.37,Os11g0642500 LOC_Os11g42300 OSNPB_110642500,Os11g0642100 LOC_Os11g42270 Os11g0642100 OSNPB_110642100,Os11g0538400 LOC_Os11g33190 Os11g0538400 OSNPB_110538400,Os11g0642000 LOC_Os11g42240 OsJ_34578 OSNPB_110642000,Os11g0538700 OSNPB_110538700,Os02g0487500 OSNPB_020487500,Os08g0330700 OSNPB_080330700,Os11g0642300 OSNPB_110642300,Os11g0641900 OSNPB_110641900 ENOG411EA05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os10g0106200 protein,Os10g0106300 protein (Putative hsr201 hypersensitivity-related protein) (Transferase family protein),Os10g0106401 protein,Os10g0106600 protein,Os10g0106500 protein,Os10g0106100 protein B9G599,Q9FWI5,A0A0P0XQV6,A0A0P0XS31,A0A0P0XRD7,A0A0P0XQX2 B9G599_ORYSJ,Q9FWI5_ORYSJ,A0A0P0XQV6_ORYSJ,A0A0P0XS31_ORYSJ,A0A0P0XRD7_ORYSJ,A0A0P0XQX2_ORYSJ Os10g0106200 OsJ_30476 OSNPB_100106200,OSJNBa0065H03.7 Os10g0106300 LOC_Os10g01690 OSNPB_100106300,Os10g0106401 OSNPB_100106401,Os10g0106600 OSNPB_100106600,Os10g0106500 OSNPB_100106500,Os10g0106100 OSNPB_100106100 ENOG411DR7S Q93ZF7 Q93ZF7_ARATH AT4g33140/F4I10_70 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) 40392 AT4g33140/F4I10_70 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) 5'-nucleotidase activity [GO:0008253]; deoxyribonucleotide catabolic process [GO:0009264] locus:2125954; AT4G33140 5' nucleotidase deoxy (Pyrimidine) cytosolic type C protein (NT5C) Os06g0192900 protein Q69Y57 Q69Y57_ORYSJ Os06g0192900 OSNPB_060192900 P0698A06.20 ENOG411DR7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain NA NA NA NA NA NA NA ENOG411DR7P heat stress tolerant DWD 1 Q9ZUN8 Q9ZUN8_ARATH Putative WD-40 repeat protein (Transducin family protein / WD-40 repeat family protein) 51404 Putative WD-40 repeat protein (Transducin family protein / WD-40 repeat family protein) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634] locus:2050388; AT2G19540 Glutamate-rich wd repeat-containing protein Glutamate-rich WD repeat-containing protein 1, putative, expressed (Os11g0134500 protein) (cDNA clone:J023031P19, full insert sequence),Glutamate-rich WD repeat-containing protein 1, putative, expressed (Os12g0132400 protein) Q2RAX1,Q0IQB5 Q2RAX1_ORYSJ,Q0IQB5_ORYSJ Os11g0134500 LOC_Os11g03990 Os11g0134500 OSNPB_110134500,Os12g0132400 LOC_Os12g03822 Os12g0132400 OSNPB_120132400 ENOG411DR7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Molybdenum cofactor sulfurase Os11g0487100 protein C7J8M5 C7J8M5_ORYSJ Os11g0487100 OSNPB_110487100 ENOG411DR7V BHLH140 Q9M041 BH140_ARATH Transcription factor bHLH140 (Basic helix-loop-helix protein 140) (AtbHLH140) (bHLH 140) (Transcription factor EN 122) (bHLH transcription factor bHLH140) ARA:AT5G01310-MONOMER; 101388 Transcription factor bHLH140 (Basic helix-loop-helix protein 140) (AtbHLH140) (bHLH 140) (Transcription factor EN 122) (bHLH transcription factor bHLH140) nucleus [GO:0005634]; adenylylsulfatase activity [GO:0047627]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA replication [GO:0006260]; purine ribonucleotide metabolic process [GO:0009150]; regulation of transcription, DNA-templated [GO:0006355]; sulfur compound metabolic process [GO:0006790]; transcription, DNA-templated [GO:0006351] locus:2179122; AT5G01310 Transcription factor Os03g0293400 protein (Fragment) A0A0P0VWB2 A0A0P0VWB2_ORYSJ Os03g0293400 OSNPB_030293400 ENOG411DR7U Q8GW93,Q9FXD2,F4HTP8 Q8GW93_ARATH,Q9FXD2_ARATH,F4HTP8_ARATH Restriction endonuclease, type II-like superfamily protein (Uncharacterized protein At1g67660) (Uncharacterized protein At1g67660/F12A21_19),F12A21.19 (Restriction endonuclease, type II-like superfamily protein),Restriction endonuclease, type II-like superfamily protein 40464,38359,35152 Restriction endonuclease, type II-like superfamily protein (Uncharacterized protein At1g67660) (Uncharacterized protein At1g67660/F12A21_19),F12A21.19 (Restriction endonuclease, type II-like superfamily protein),Restriction endonuclease, type II-like superfamily protein DNA binding [GO:0003677]; endonuclease activity [GO:0004519] locus:2824070; AT1G67660 YqaJ-like viral recombinase domain Os04g0485700 protein (Fragment),Os08g0236700 protein (Fragment) Q0JC89,A0A0N7KPH9 Q0JC89_ORYSJ,A0A0N7KPH9_ORYSJ Os04g0485700 Os04g0485700 OSNPB_040485700,Os08g0236700 OSNPB_080236700 ENOG411DR7Z TBL41 F4IWA8 TBL41_ARATH Protein trichome birefringence-like 41 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 40111 Protein trichome birefringence-like 41 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2099402; AT3G14850 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411DR7Y F10L8.3 Q93YQ0,A0A1P8ATW8 Q93YQ0_ARATH,A0A1P8ATW8_ARATH At1g53120 (RNA-binding S4 domain-containing protein) (Uncharacterized protein At1g53120) (Uncharacterized protein F10L8.3),RNA-binding S4 domain-containing protein 34555,34468 At1g53120 (RNA-binding S4 domain-containing protein) (Uncharacterized protein At1g53120) (Uncharacterized protein F10L8.3),RNA-binding S4 domain-containing protein chloroplast [GO:0009507]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2037048; AT1G53120 RNA-binding protein Os01g0747700 protein (S4 domain protein-like) Q5JNI6 Q5JNI6_ORYSJ Os01g0747700 Os01g0747700 OSNPB_010747700 P0481E12.15 ENOG411DR7C PDH2 Q38799 ODPB1_ARATH Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial (PDHE1-B) (EC 1.2.4.1) (Protein MACCI-BOU) Embryo defective-M. Taska-2007 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). ARA:AT5G50850-MONOMER; R-ATH-204174;R-ATH-5362517;R-ATH-70268; 1.2.4.1 39176 Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial (PDHE1-B) (EC 1.2.4.1) (Protein MACCI-BOU) apoplast [GO:0048046]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; vacuolar membrane [GO:0005774]; pyruvate dehydrogenase (acetyl-transferring) activity [GO:0004739]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; defense response to bacterium [GO:0042742]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Expressed in roots, immature rosettes, and mature rosettes. {ECO:0000269|PubMed:8061040}. locus:2152745; AT5G50850 pyruvate dehydrogenase E1 component subunit beta Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial (PDHE1-B) (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial (PDHE1-B) (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit beta (EC 1.2.4.1) Q6Z1G7,Q0J0H4,B7E707 ODPB1_ORYSJ,ODPB2_ORYSJ,B7E707_ORYSJ Os08g0536000 LOC_Os08g42410 OsJ_28086 OSJNBa0033D24.29 P0665C04.10,Os09g0509200 LOC_Os09g33500 OsJ_29962,Os09g0509200 OSNPB_090509200 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}.,FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. {ECO:0000256|RuleBase:RU364074}. ENOG411DR7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA27 (Indoleacetic acid-induced protein 27),Auxin-responsive protein P0C129,H2KW23 IAA27_ORYSJ,H2KW23_ORYSJ IAA27 Os11g0221000 LOC_Os11g11410,Os11g0221000 LOC_Os11g11410 OSNPB_110221000 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. MISCELLANEOUS: Lacks the EAR-like motif (domain I) which is conserved in the Aux/IAA family. ENOG411DR7A PDIL2-2,PDIL2-3 Q9MAU6,O48773 PDI22_ARATH,PDI23_ARATH Protein disulfide-isomerase like 2-2 (AtPDIL2-2) (EC 5.3.4.1) (Protein disulfide-isomerase 10) (PDI10) (Protein disulfide-isomerase like 5-1) (AtPDIL5-1),Protein disulfide-isomerase 2-3 (AtPDIL2-3) (EC 5.3.4.1) (Protein disulfide-isomerase 5-2) (AtPDIL5-2) (Protein disulfide-isomerase 9) (PDI9) FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}. 5.3.4.1 48403,47755 Protein disulfide-isomerase like 2-2 (AtPDIL2-2) (EC 5.3.4.1) (Protein disulfide-isomerase 10) (PDI10) (Protein disulfide-isomerase like 5-1) (AtPDIL5-1),Protein disulfide-isomerase 2-3 (AtPDIL2-3) (EC 5.3.4.1) (Protein disulfide-isomerase 5-2) (AtPDIL5-2) (Protein disulfide-isomerase 9) (PDI9) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; plant-type cell wall [GO:0009505]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595}. locus:2010577;,locus:2059395; AT1G04980,AT2G32920 Protein disulfide isomerase Protein disulfide isomerase-like 2-3 (OsPDIL2-3) (EC 5.3.4.1) (Protein disulfide isomerase-like 5-1) (OsPDIL5-1) Q67UF5 PDI23_ORYSJ PDIL2-3 PDIL5-1 Os09g0451500 LOC_Os09g27830 OJ1163_C07.26 P0488D02.3 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis. {ECO:0000269|PubMed:21278127}. ENOG411DR7G GCR1 O04714 GCR1_ARATH G-protein coupled receptor 1 DISRUPTION PHENOTYPE: Hypersensitivity to abscisic acid (ABA) and to the lipid metabolite, sphingosine-1-phosphate (S1P), a transducer of the ABA signal. Improved drought tolerance accompanied by lower rates of water loss. Impaired sensitivity to gibberellin (GA) and brassinosteroid (BR) in seed germination. Hypersensitivity to ABA and glucose (Glc) during and after seed germination. Altered response to blue light (BL). {ECO:0000269|PubMed:15155892, ECO:0000269|PubMed:15181210, ECO:0000269|PubMed:16415218, ECO:0000269|PubMed:16581874, ECO:0000269|PubMed:17322342}. FUNCTION: Together with GPA1, may regulate the cell cycle via a signaling cascade that uses phosphatidylinositol-specific phospholipase C (PI-PLC) as an effector and inositol 1,4,5-trisphosphate(IP(3)) as a second messenger. Acts as a negative regulator of GPA1-mediated abscisic acid (ABA) responses in guard cells, and together with GPA1 and GB1 during seed germination and early seedling development. Promotes PI-PLC activity and IP(3) accumulation. Involved in the blue light (BL) signaling. Together with GPA1 and ADT3, required for BL-mediated synthesis of phenylpyruvate and subsequently of phenylalanine (Phe), in etiolated seedlings. Probably involved in cytokinin signal transduction. Plays a positive role in gibberellin- (GA) and brassinosteroid- (BR) regulated seed germination, probably independently of a heterotrimeric G-protein. Mediates seed dormancy abolition, and promotes seed germination and flowering. {ECO:0000269|PubMed:11930019, ECO:0000269|PubMed:12972659, ECO:0000269|PubMed:15155892, ECO:0000269|PubMed:15181210, ECO:0000269|PubMed:16415218, ECO:0000269|PubMed:16581874, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9512416}. 37248 G-protein coupled receptor 1 Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; spanning component of plasma membrane [GO:0044214]; vacuolar membrane [GO:0005774]; G-protein coupled receptor activity [GO:0004930]; abscisic acid-activated signaling pathway [GO:0009738]; activation of phospholipase C activity [GO:0007202]; blue light signaling pathway [GO:0009785]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; cytokinin-activated signaling pathway [GO:0009736]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; L-phenylalanine biosynthetic process [GO:0009094]; lipid metabolic process [GO:0006629]; maintenance of seed dormancy [GO:0010231]; mitotic cell cycle [GO:0000278]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; positive regulation of gibberellic acid mediated signaling pathway [GO:0009939]; regulation of inositol trisphosphate biosynthetic process [GO:0032960]; response to cytokinin [GO:0009735]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; seed germination [GO:0009845]; tyrosine biosynthetic process [GO:0006571] DEVELOPMENTAL STAGE: In seedlings, mostly expressed in small roots, and to a lower extent in hypocotyls. In young plants, equaly expressed in leaves, roots, and shoot tip. In old plants, present in roots, flower buds and young siliques, but not in leaves. {ECO:0000269|PubMed:11930019}. TISSUE SPECIFICITY: Mostly present in the meristematic regions. Expressed at low levels in seedlings, vascular tissues of cotyledons, hypocotyl, and roots, stems, leaves, flowering buds and siliques. In dark-grown seedlings, localized in the cotyledons and the hook. {ECO:0000269|PubMed:11930019, ECO:0000269|PubMed:15181210, ECO:0000269|PubMed:9512416}. locus:2007710; AT1G48270 coupled receptor G protein coupled receptor-related-like (Os06g0199800 protein) (cDNA clone:J033046K12, full insert sequence) Q69K53 Q69K53_ORYSJ Os06g0199800 B1172G12.29 OJ1147_D11.7 OsJ_20470 OSNPB_060199800 ENOG411DR7F O22165 RLP24_ARATH Probable ribosome biogenesis protein RLP24 FUNCTION: Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles. {ECO:0000250|UniProtKB:Q07915}. 18942 Probable ribosome biogenesis protein RLP24 cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; assembly of large subunit precursor of preribosome [GO:1902626]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:2054982; AT2G44860 ribosome biogenesis protein 60S ribosomal protein L30-like protein (Os01g0514000 protein),Os07g0292800 protein (Putative 60S ribosomal protein L30) (cDNA clone:J033051L19, full insert sequence) Q5QMX1,Q84ZF9 Q5QMX1_ORYSJ,Q84ZF9_ORYSJ B1075D06.1-1 P0504D03.37-1 Os01g0514000 OsJ_01992 OSNPB_010514000,P0656C04.124 P0446G09.102 Os07g0292800 OsJ_23889 OSNPB_070292800 ENOG411DR7E Q8LA67 Q8LA67_ARATH Uncharacterized protein 34060 Uncharacterized protein locus:2142833; AT5G07950 NA Os03g0213200 protein B9F661 B9F661_ORYSJ Os03g0213200 OsJ_09897 OSNPB_030213200 ENOG411DR7D Q949M9,F4HU77,B3H5S5 Q949M9_ARATH,F4HU77_ARATH,B3H5S5_ARATH ATPase ASNA1 homolog (EC 3.6.-.-) (Arsenical pump-driving ATPase homolog) (Arsenite-stimulated ATPase),Arsenical pump-driving ATPase (EC 3.6.-.-) FUNCTION: ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting. {ECO:0000256|HAMAP-Rule:MF_03112}. ARA:AT1G01910-MONOMER; R-ATH-381038; 3.6.-.- 39670,28898,33910 ATPase ASNA1 homolog (EC 3.6.-.-) (Arsenical pump-driving ATPase homolog) (Arsenite-stimulated ATPase),Arsenical pump-driving ATPase (EC 3.6.-.-) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; metal ion binding [GO:0046872]; protein self-association [GO:0043621]; protein insertion into ER membrane [GO:0045048]; root hair elongation [GO:0048767]; transport [GO:0006810],endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810],endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; metal ion binding [GO:0046872]; protein insertion into ER membrane [GO:0045048]; transport [GO:0006810] locus:2025467; AT1G01910 ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. Subsequently the homodimer reverts towards the open dimer state lowering its affinity for the membrane-bound receptor and returning it to the cytosol to initiate a new round of targeting (By similarity) ATPase (EC 3.6.-.-) (Arsenical pump-driving ATPase) (Arsenite-stimulated ATPase) Q64MA8 Q64MA8_ORYSJ Os09g0521500 OsJ_17426 OSJNOa273B05.2 OSNPB_090521500 FUNCTION: ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting. {ECO:0000256|HAMAP-Rule:MF_03112}. ENOG411DR7K EMB3103 Q0WVV0,A0A1P8AN66 PPR31_ARATH,A0A1P8AN66_ARATH Pentatricopeptide repeat-containing protein At1g10910, chloroplastic,Pentatricopeptide repeat (PPR) superfamily protein Embryo defective; Globular-D. Meinke-2011 75099,66607 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic,Pentatricopeptide repeat (PPR) superfamily protein chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2197424; AT1G10910 pentatricopeptide repeat-containing protein At1g10910 Os01g0559500 protein (Putative PPR protein) Q5JKQ7 Q5JKQ7_ORYSJ B1064G04.23 Os01g0559500 OSNPB_010559500 ENOG411DR7J NPY2 O80970 NPY2_ARATH BTB/POZ domain-containing protein NPY2 (Protein NAKED PINS IN YUC MUTANTS 2) FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses. {ECO:0000250, ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. PATHWAY: Protein modification; protein ubiquitination. 70194 BTB/POZ domain-containing protein NPY2 (Protein NAKED PINS IN YUC MUTANTS 2) cell periphery [GO:0071944]; positive gravitropism [GO:0009958]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Specifically expressed in the hypophysis and the root meristems in the embryos. Highly expressed in primary root tips. {ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. locus:2046961; AT2G14820 BTB POZ domain-containing protein Os12g0583500 protein (Transposon protein, putative, Mutator sub-class, expressed),Os03g0205700 protein (Transposon protein, putative, Mutator sub-class, expressed),Os03g0609800 protein (Putative NPH3 family protein) (Transposon protein, putative, Mutator sub-class, expressed) (Transposon protein, putative, mutator sub-class) (cDNA clone:J013046P19, full insert sequence),Os03g0205700 protein (Transposon protein, putative, Mutator sub-class, expressed) (cDNA clone:001-123-E02, full insert sequence) Q2QN08,Q10Q87,Q75H87,Q10Q86 Q2QN08_ORYSJ,Q10Q87_ORYSJ,Q75H87_ORYSJ,Q10Q86_ORYSJ Os12g0583500 LOC_Os12g39380 Os12g0583500 OSNPB_120583500,LOC_Os03g10800 Os03g0205700 OsJ_09839 OSNPB_030205700,OSJNBb0007E22.1 LOC_Os03g41350 Os03g0609800 OsJ_11706 OSNPB_030609800,Os03g0205700 LOC_Os03g10800 OSNPB_030205700 ENOG411DR7I NAC007,NAC026 Q9FWX2,F4HYV5,A0A1P8AVF8 NAC7_ARATH,NAC26_ARATH,A0A1P8AVF8_ARATH NAC domain-containing protein 7 (ANAC007) (Protein EMBRYO DEFECTIVE 2749) (Protein VASCULAR RELATED NAC-DOMAIN 4),NAC domain-containing protein 26 (ANAC026) (Protein VASCULAR RELATED NAC-DOMAIN 5),NAC 007 DISRUPTION PHENOTYPE: Embryo deffective. {ECO:0000269|Ref.7}. Embryo defective; Globular-D. Meinke-2003 FUNCTION: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.,FUNCTION: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. 45841,45585,39884 NAC domain-containing protein 7 (ANAC007) (Protein EMBRYO DEFECTIVE 2749) (Protein VASCULAR RELATED NAC-DOMAIN 4),NAC domain-containing protein 26 (ANAC026) (Protein VASCULAR RELATED NAC-DOMAIN 5),NAC 007 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell wall organization [GO:0071555]; multicellular organism development [GO:0007275]; positive regulation of secondary cell wall biogenesis [GO:1901348]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; xylem vessel member cell differentiation [GO:0048759],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.,TISSUE SPECIFICITY: Detected in root vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Expressed in developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. locus:2202028;,locus:2026232; AT1G12260,AT1G62700 NAC domain-containing protein Os02g0643600 protein (Putative OsNAC7 protein),Os04g0536500 protein Q6H666,Q0JBE9 Q6H666_ORYSJ,Q0JBE9_ORYSJ OJ1282_H11.7 Os02g0643600 OSNPB_020643600,Os04g0536500 Os04g0536500 OSNPB_040536500 ENOG411DR7H KIN8A F4ICA0 KN8A_ARATH Kinesin-like protein KIN-8A R-ATH-6811434;R-ATH-983189; 81769 Kinesin-like protein KIN-8A kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2027478; AT1G18550 KISc Kinesin-like protein KIN-8A Q0JLE4 KN8A_ORYSJ KIN8A Os01g0605500 LOC_Os01g42070 OsJ_02534 ENOG411DR7N Q9FJ45 GDL83_ARATH GDSL esterase/lipase At5g45910 (EC 3.1.1.-) (Extracellular lipase At5g45910) ARA:AT5G45910-MONOMER; 3.1.1.- 41534 GDSL esterase/lipase At5g45910 (EC 3.1.1.-) (Extracellular lipase At5g45910) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2152385; AT5G45910 GDSL esterase lipase Os01g0215700 protein (cDNA clone:001-022-B07, full insert sequence) (cDNA clone:006-207-F05, full insert sequence) Q0JPL8 Q0JPL8_ORYSJ Os01g0215700 Os01g0215700 OSNPB_010215700 ENOG411DR7M TBL10,TBL11 Q9LDG2,Q5BPJ0,A0A1P8B9S0 TBL10_ARATH,TBL11_ARATH,A0A1P8B9S0_ARATH Protein trichome birefringence-like 10,Protein trichome birefringence-like 11,TRICHOME BIREFRINGENCE-LIKE 11 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 53649,54225,41641 Protein trichome birefringence-like 10,Protein trichome birefringence-like 11,TRICHOME BIREFRINGENCE-LIKE 11 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554]; circadian rhythm [GO:0007623],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],integral component of membrane [GO:0016021] locus:2080389;,locus:2182157; AT3G06080,AT5G19160 Pfam:DUF231 Expressed protein (Os12g0145400 protein),Os01g0886700 protein (Fragment),Os11g0148200 protein Q2QXS1,A0A0N7KE73,A0A0P0XYV3 Q2QXS1_ORYSJ,A0A0N7KE73_ORYSJ,A0A0P0XYV3_ORYSJ Os12g0145400 LOC_Os12g05080 Os12g0145400 OSNPB_120145400,Os01g0886700 OSNPB_010886700,Os11g0148200 OSNPB_110148200 ENOG411DR73 LOG2,LUL2,LUL1 Q9S752,Q9LFH6,Q9LYW5,F4J1B3 LOFG2_ARATH,LUL2_ARATH,LUL1_ARATH,F4J1B3_ARATH Probable E3 ubiquitin-protein ligase LOG2 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LOG2) (Protein LOSS OF GDU2) (RING finger protein 215),Probable E3 ubiquitin-protein ligase LUL2 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL2) (Protein LOG2-LIKE UBIQUITIN LIGASE 2) (RING finger protein 269),Probable E3 ubiquitin-protein ligase LUL1 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL1) (Protein LOG2-LIKE UBIQUITIN LIGASE 1) (RING finger protein 370),RING/U-box superfamily protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:22291198}. FUNCTION: Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro). Required for GLUTAMINE DUMPER 1(GDU1)-induced amino acid secretion and for amino acid homeostasis. Ubiquitinates GDU1 (in vitro). {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:22291198}.,FUNCTION: Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro). {ECO:0000269|PubMed:22291198}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 42848,33599,37720,37662 Probable E3 ubiquitin-protein ligase LOG2 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LOG2) (Protein LOSS OF GDU2) (RING finger protein 215),Probable E3 ubiquitin-protein ligase LUL2 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL2) (Protein LOG2-LIKE UBIQUITIN LIGASE 2) (RING finger protein 269),Probable E3 ubiquitin-protein ligase LUL1 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL1) (Protein LOG2-LIKE UBIQUITIN LIGASE 1) (RING finger protein 370),RING/U-box superfamily protein plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway involved in stomatal movement [GO:1901527]; amino acid homeostasis [GO:0080144]; response to abscisic acid [GO:0009737],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Expressed in the vascular tissues in both phloem and xylem parenchyma cells. {ECO:0000269|PubMed:22291198}. locus:2075069;,locus:2084026;,locus:2143493; AT3G09770,AT3G53410,AT5G03200 zinc finger Os03g0254900 protein (Zinc finger family protein, putative, expressed) (cDNA clone:J023020P04, full insert sequence),Os10g0204100 protein (Putative hydroxyproline-rich glycoprotein) (RING zinc finger protein, putative, expressed),Os03g0254900 protein (Fragment) Q10NY0,Q8RUJ8,A0A0P0VVJ6 Q10NY0_ORYSJ,Q8RUJ8_ORYSJ,A0A0P0VVJ6_ORYSJ Os03g0254900 LOC_Os03g15000 OSNPB_030254900,Os10g0204100 LOC_Os10g13670 Os10g0204100 OsJ_31005 OSJNBa0004P12.16 OSJNBb0048O22.4 OSNPB_100204100,Os03g0254900 OSNPB_030254900 ENOG411DR72 Q84J48,Q9LYH2 Q84J48_ARATH,Q9LYH2_ARATH Nuclease (Uncharacterized protein At4g29780),AT5g12010/F14F18_180 (Nuclease) (Uncharacterized protein F14F18_180) 60119,56815 Nuclease (Uncharacterized protein At4g29780),AT5g12010/F14F18_180 (Nuclease) (Uncharacterized protein F14F18_180) chloroplast [GO:0009507]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774] locus:2123874;,locus:2143104; AT4G29780,AT5G12010 Inherit from KOG: transposon protein Os01g0582600 protein,Os05g0593000 protein,Os04g0142100 protein Q8LJ71,Q6L4R6,A0A0P0W6Z7 Q8LJ71_ORYSJ,Q6L4R6_ORYSJ,A0A0P0W6Z7_ORYSJ B1097D05.32 Os01g0582600 OSNPB_010582600,Os05g0593000 Os05g0593000 OsJ_19762 OSNPB_050593000 P0663C08.12,Os04g0142100 OSNPB_040142100 ENOG411DR71 PCMP-E37 Q9FHR3 PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570 61652 Putative pentatricopeptide repeat-containing protein At5g37570 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2151694; AT5G37570 Pentatricopeptide repeat-containing protein OJ991214_12.4 protein (Os04g0414800 protein) Q7XTG3 Q7XTG3_ORYSJ Os04g0414800 Os04g0414800 OJ991214_12.4 OsJ_14749 OSNPB_040414800 ENOG411DR77 Q8L7A0,A0A1P8B1L3 TAUE3_ARATH,A0A1P8B1L3_ARATH Sulfite exporter TauE/SafE family protein 3,Sulfite exporter TauE/SafE family protein 51994,40615 Sulfite exporter TauE/SafE family protein 3,Sulfite exporter TauE/SafE family protein integral component of membrane [GO:0016021]; transport [GO:0006810],integral component of membrane [GO:0016021] locus:504956017; AT2G25737 Sulfite exporter TauE/SafE Membrane protein-like (Os08g0389700 protein),Os08g0389700 protein,Membrane protein-like (Os09g0344800 protein) (cDNA clone:001-044-G03, full insert sequence),Os08g0387200 protein Q6Z001,Q6Z000,Q6EQH5,Q6ZA07 Q6Z001_ORYSJ,Q6Z000_ORYSJ,Q6EQH5_ORYSJ,Q6ZA07_ORYSJ P0473F05.27-1 P0671F11.4-1 Os08g0389700 OSNPB_080389700,P0473F05.27-3 Os08g0389700 P0671F11.4-3 OSNPB_080389700,Os09g0344800 Os09g0344800 OSJNBb0085I16.11 OSNPB_090344800,Os08g0387200 Os08g0387200 OsJ_27163 OSNPB_080387200 P0434E03.23 ENOG411DR76 ABCB25 Q9LVM1 AB25B_ARATH ABC transporter B family member 25, mitochondrial (ABC transporter ABCB.25) (AtABCB25) (ABC transporter of the mitochondrion 3) (AtATM3) (Iron-sulfur clusters transporter ATM3) (Protein STARIK 1) DISRUPTION PHENOTYPE: Plants exhibit an enhanced sensitivity to cadmium, dwarfism and chlorosis, with an altered morphology of leaf and cell nuclei. Mitochondria accumulate nonheme, nonprotein iron. Decreased levels of molybdenum cofactor (MOCO) and reduced activities of cytosolic Fe-S proteins. Reduced ability to produce abscisic acid under normal conditions and in response to drought stress. Male sterility when homozygous. {ECO:0000269|PubMed:11158531, ECO:0000269|PubMed:16461380, ECO:0000269|PubMed:19710232, ECO:0000269|PubMed:20164445}. reduction in Mo enzyme activities Dwarf; Chlorotic; Abnormal leaf morphology-M. Van Montagu-2001 FUNCTION: Performs an essential function in the generation of cytoplasmic iron-sulfur proteins by mediating export of Fe/S cluster precursors synthesized by NFS1 and other mitochondrial proteins. Not required for mitochondrial and plastid Fe-S enzymes. Probably involved in the export of cyclic pyranopterin monophosphate (cPMP) from mitochondria into the cytosol. Mediates glutathione-dependent resistance to heavy metals such as cadmium and lead, as well as their transport from roots to leaves. Regulates nonprotein thiols (NPSH) and the cellular level of glutathione (GSH). {ECO:0000269|PubMed:11158531, ECO:0000269|PubMed:16461380, ECO:0000269|PubMed:17517886, ECO:0000269|PubMed:19710232, ECO:0000269|PubMed:20164445}. PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. ARA:AT5G58270-MONOMER; R-ATH-1369007; 80420 ABC transporter B family member 25, mitochondrial (ABC transporter ABCB.25) (AtABCB25) (ABC transporter of the mitochondrion 3) (AtATM3) (Iron-sulfur clusters transporter ATM3) (Protein STARIK 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; cellular iron ion homeostasis [GO:0006879]; chloroplast organization [GO:0009658]; chromosome organization [GO:0051276]; ion transport [GO:0006811]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; pollen development [GO:0009555]; regulation of catalytic activity [GO:0050790]; regulation of chlorophyll biosynthetic process [GO:0010380]; response to cadmium ion [GO:0046686]; response to lead ion [GO:0010288]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed at high levels in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17517886}. locus:2161183; AT5G58270 ABC transporter Os06g0128300 protein (Putative mitochondrial half-ABC transporter),Os06g0128300 protein (Fragment) Q658I3,A0A0P0WSF2 Q658I3_ORYSJ,A0A0P0WSF2_ORYSJ Os06g0128300 Os06g0128300 OsJ_19973 OSNPB_060128300 P0538C01.5,Os06g0128300 OSNPB_060128300 ENOG411DR75 NUDT15,NUDT22 Q8GYB1,O22951,Q0WN57,A0A1P8B2A3 NUD15_ARATH,NUD22_ARATH,Q0WN57_ARATH,A0A1P8B2A3_ARATH Nudix hydrolase 15, mitochondrial (AtNUDT15) (EC 3.6.1.-) (Coenzyme A diphosphatase NUDT15),Nudix hydrolase 22, chloroplastic (AtNUDT22) (EC 3.6.1.-),Nudix hydrolase homolog 22 (Uncharacterized protein At2g33980),Nudix hydrolase homolog 22 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Coenzyme A diphosphatase which mediates the cleavage of oxidized CoA. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA.,FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}. R-ATH-390918; 3.6.1.- 31898,33914,29061,35765 Nudix hydrolase 15, mitochondrial (AtNUDT15) (EC 3.6.1.-) (Coenzyme A diphosphatase NUDT15),Nudix hydrolase 22, chloroplastic (AtNUDT22) (EC 3.6.1.-),Nudix hydrolase homolog 22 (Uncharacterized protein At2g33980),Nudix hydrolase homolog 22 mitochondrion [GO:0005739]; CoA pyrophosphatase activity [GO:0010945]; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [GO:0008893]; metal ion binding [GO:0046872]; coenzyme A biosynthetic process [GO:0015937]; nucleoside phosphate metabolic process [GO:0006753]; succinyl-CoA metabolic process [GO:0006104],chloroplast [GO:0009507]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872],hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2018773;,locus:2055420; AT1G28960,AT2G33980 nudix hydrolase 15 Os08g0375900 protein (Putative phosphohydrolase),Os08g0375900 protein,Os08g0376200 protein Q7F188,A0A0P0XF52,A0A0P0XFE1 Q7F188_ORYSJ,A0A0P0XF52_ORYSJ,A0A0P0XFE1_ORYSJ OJ1705_C03.104-1 P0436B06.30-1 Os08g0375900 OSNPB_080375900,Os08g0375900 OSNPB_080375900,Os08g0376200 OSNPB_080376200 ENOG411DR74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane emp24 domain-containing protein Os07g0632700 protein (Putative transmembrane protein) (cDNA clone:006-305-H05, full insert sequence),Emp24/gp25L/p24 family protein, expressed (Os03g0376000 protein) (Putative transmembrane protein) Q7XI54,Q10KP5 Q7XI54_ORYSJ,Q10KP5_ORYSJ P0519E12.121 Os07g0632700 OSNPB_070632700,Os03g0376000 LOC_Os03g25930 Os03g0376000 OsJ_11030 OSJNBb0048D20.8 OSNPB_030376000 ENOG411EA0A WAVH1,EDA40 Q9ZQ46,F4JSV3,F4JSV2 Q9ZQ46_ARATH,F4JSV3_ARATH,F4JSV2_ARATH At2g22680 (Copia-like retroelement pol polyprotein) (Putative copia-like retroelement pol polyprotein) (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein FUNCTION: E3 ubiquitin-protein ligase involved in the regulation of root growth. Acts as positive regulator of root gravitropism. Possesses E3 protein ligase activity in vitro. {ECO:0000269|PubMed:22122664}.,FUNCTION: Probable E3 ubiquitin-protein ligase involved in female gametophyte development. Required for fusion of polar nuclei in the embryo sac. {ECO:0000269|PubMed:15634699}. 74401,81479,78058 At2g22680 (Copia-like retroelement pol polyprotein) (Putative copia-like retroelement pol polyprotein) (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polar nucleus fusion [GO:0010197] locus:2065999;,locus:2121008; AT2G22680,AT4G37890 embryo sac development arrest 40 NA NA NA NA NA NA NA ENOG411EIM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA The ARF-like 2 binding protein BART NA NA NA NA NA NA NA ENOG411DYQ8 Q5XV71,B3H6U5 Q5XV71_ARATH,B3H6U5_ARATH 2-isopropylmalate synthase 81811,70650 2-isopropylmalate synthase locus:2124034; AT4G27510 NA Os02g0461200 protein (cDNA clone:001-115-G10, full insert sequence) Q6K6F7 Q6K6F7_ORYSJ Os02g0461200 OSNPB_020461200 P0644G05.19 ENOG411DYQ2 TIC20-I Q8GZ79 TI201_ARATH Protein TIC 20-I, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-I) (AtTIC20-I) DISRUPTION PHENOTYPE: Albino and seedling lethality. Tic20-I and tic20-IV double mutant is embryo lethal. {ECO:0000269|PubMed:16891400, ECO:0000269|PubMed:19531596, ECO:0000269|PubMed:21266460, ECO:0000269|PubMed:21395885}. Albino phenotype even in the youngest part of the seedling which often accumulates anthocyanins.,Seedlings grown in artificial media supplemented with sucrose are able to produce a few irregularly shaped leaves followed by an arrest in growth. The timing of growth arrest varies from one seedling to the next leading to a variety of sizes and morphologies. Null: Seedling lethal; Knockdown: Pale cotyledons; Pale leaves-D. Schnell-2002 FUNCTION: Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope. Seems to be specific for photosynthesis-related pre-proteins. Partially redundant with TIC20-IV, but not with TIC20-II or TIC20-V. {ECO:0000269|PubMed:11910011, ECO:0000269|PubMed:19531596, ECO:0000269|PubMed:21266460, ECO:0000269|PubMed:23372012}. 31204 Protein TIC 20-I, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-I) (AtTIC20-I) chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; protein transporter activity [GO:0008565]; protein import into chloroplast stroma [GO:0045037] DEVELOPMENTAL STAGE: Highly expressed during germination and early development, with levels peaking at 25 days. {ECO:0000269|PubMed:11910011}. TISSUE SPECIFICITY: Expressed in leaves, shoots and roots. High expression in mature photosynthetic tissues. Lower levels in non-photosynthetic tissues and roots. {ECO:0000269|PubMed:11910011, ECO:0000269|PubMed:15033972, ECO:0000269|PubMed:21266460, ECO:0000269|PubMed:21395885}. locus:2010617; AT1G04940 Tic20-like protein NA NA NA NA NA NA NA ENOG411DYQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os02g0822900 protein A0A0P0VRD5 A0A0P0VRD5_ORYSJ Os02g0822900 OSNPB_020822900 ENOG411DYQ1 CYP86A1 P48422 C86A1_ARATH Cytochrome P450 86A1 (EC 1.14.13.205) (CYPLXXXVI) (P450-dependent fatty acid omega-hydroxylase) (Protein HYDROXYLASE OF ROOT SUBERIZED TISSUE) FUNCTION: Catalyzes the omega-hydroxylation of various fatty acids (FA). Acts on saturated and unsaturated fatty acids with chain lengths from C12 to C18 but not on hexadecane. {ECO:0000269|PubMed:15709153, ECO:0000269|PubMed:17427946, ECO:0000269|PubMed:9500987}. ARA:AT5G58860-MONOMER;MetaCyc:AT5G58860-MONOMER; 1.14.15.3; 1.14.13.205 58553 Cytochrome P450 86A1 (EC 1.14.13.205) (CYPLXXXVI) (P450-dependent fatty acid omega-hydroxylase) (Protein HYDROXYLASE OF ROOT SUBERIZED TISSUE) integral component of membrane [GO:0016021]; vacuole [GO:0005773]; alkane 1-monooxygenase activity [GO:0018685]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; fatty acid metabolic process [GO:0006631]; suberin biosynthetic process [GO:0010345] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:15709153}. locus:2154558; AT5G58860 cytochrome P450 Os01g0854800 protein (Putative cytochrome P450) (cDNA clone:002-145-C01, full insert sequence) Q5N7U6 Q5N7U6_ORYSJ Os01g0854800 Os01g0854800 B1096A10.16 OsJ_04113 OSNPB_010854800 ENOG411DYQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4-coumarate-CoA ligase activity Probable 4-coumarate--CoA ligase 1 (4CL 1) (Os4CL1) (EC 6.2.1.12) (4-coumaroyl-CoA synthase 1) P17814 4CL1_ORYSJ 4CL1 4CL Os08g0245200 LOC_Os08g14760 OJ1033_B09.16 ENOG411DYQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) Os02g0827400 protein (Fragment) A0A0P0VRV6 A0A0P0VRV6_ORYSJ Os02g0827400 OSNPB_020827400 ENOG411DYQK Q8L797 Q8L797_ARATH At5g09320 (Uncharacterized protein At5g09320) (Vacuolar sorting protein 9 domain protein) 29888 At5g09320 (Uncharacterized protein At5g09320) (Vacuolar sorting protein 9 domain protein) Pentatricopeptide repeat-containing protein Os04g0475500 protein (Fragment) A0A0P0WBN4 A0A0P0WBN4_ORYSJ Os04g0475500 OSNPB_040475500 ENOG411DYQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-V Os01g0729600 protein (Putative aminotransferase),Os11g0209900 protein Q9AX15,Q0ITX2 Q9AX15_ORYSJ,Q0ITX2_ORYSJ Os01g0729600 Os01g0729600 OsJ_03339 OSNPB_010729600 P0435H01.13 P0456A01.30,Os11g0209900 OSNPB_110209900 ENOG411DYQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like Os09g0309200 protein (cDNA clone:002-137-A07, full insert sequence),Os08g0360300 protein Q0J2S0,A0A0P0XF72 Q0J2S0_ORYSJ,A0A0P0XF72_ORYSJ Os09g0309200 Os09g0309200 OSNPB_090309200,Os08g0360300 OSNPB_080360300 ENOG411DYQA YchF1 Q9SA73 OLA1_ARATH Obg-like ATPase 1 (Ribosome-binding ATPase YchF) (AtYchF1) DISRUPTION PHENOTYPE: Increased tolerance to salinity stress. {ECO:0000269|PubMed:23550829}. FUNCTION: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (Potential). Exhibits GTPase activity (By similarity). Confers sensitivity to salinity stress by suppressing the anti-oxidation enzymatic activities and increasing lipid peroxidation thus leading to the accumulation of reactive oxygen species (ROS) (PubMed:23550829). {ECO:0000250|UniProtKB:Q6Z1J6, ECO:0000255|HAMAP-Rule:MF_03167, ECO:0000269|PubMed:23550829}. R-ATH-114608; 44471 Obg-like ATPase 1 (Ribosome-binding ATPase YchF) (AtYchF1) cytosol [GO:0005829]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; negative regulation of response to salt stress [GO:1901001]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] locus:2204599; AT1G30580 Protein of unknown function (DUF933) Obg-like ATPase 1 (EC 3.6.5.-) (Ribosome-binding ATPase YchF) (OsYchF1) Q6Z1J6 OLA1_ORYSJ YchF1 LOC_Os08g09940 Os08g0199300 OsJ_26368 OSJNBb0094P23.28 FUNCTION: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (Potential). Exhibits GTPase activity (PubMed:19086295). Confers sensitivity to salinity stress by suppressing the anti-oxidation enzymatic activities and increasing lipid peroxidation thus leading to the accumulation of reactive oxygen species (ROS) (PubMed:23550829). {ECO:0000255|HAMAP-Rule:MF_03167, ECO:0000269|PubMed:19086295, ECO:0000269|PubMed:23550829}. ENOG411DYQF Q8LPQ3,Q94A73,A0A1I9LS86,A0A1P8B9D2,A0A1P8B9D5,A0A1P8B9C9 Y3084_ARATH,Y5656_ARATH,A0A1I9LS86_ARATH,A0A1P8B9D2_ARATH,A0A1P8B9D5_ARATH,A0A1P8B9C9_ARATH BTB/POZ domain-containing protein At3g50840,BTB/POZ domain-containing protein At5g66560,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 64301,74540,60078,53255,70159,71411 BTB/POZ domain-containing protein At3g50840,BTB/POZ domain-containing protein At5g66560,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567],plasma membrane [GO:0005886]; protein ubiquitination [GO:0016567] locus:2077992;,locus:2154920; AT3G50840,AT5G66560 BTB POZ domain-containing protein Os03g0767600 protein (Transposon protein, putative, Mutator sub-class, expressed),Os03g0738900 protein,Os12g0542300 protein (Fragment) Q10EK0,A0A0P0W2T4,A0A0P0YB18 Q10EK0_ORYSJ,A0A0P0W2T4_ORYSJ,A0A0P0YB18_ORYSJ Os03g0767600 LOC_Os03g55830 Os03g0767600 OsJ_12719 OSNPB_030767600,Os03g0738900 OSNPB_030738900,Os12g0542300 OSNPB_120542300 ENOG411DYQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0595800 protein (Protein kinase domain containing protein, expressed),Os12g0595800 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J023098M23, full insert sequence),Os12g0595800 protein Q2QMQ0,B7EKS1,A0A0P0YCB3 Q2QMQ0_ORYSJ,B7EKS1_ORYSJ,A0A0P0YCB3_ORYSJ Os12g0595800 LOC_Os12g40419 Os12g0595800 OsJ_36737 OSNPB_120595800,Os12g0595800 LOC_Os12g40419 OSNPB_120595800,Os12g0595800 OSNPB_120595800 ENOG411DYQZ Q9LK74 Q9LK74_ARATH At3g16510 (Calcium-dependent lipid-binding (CaLB domain) family protein) 39286 At3g16510 (Calcium-dependent lipid-binding (CaLB domain) family protein) locus:2088334; AT3G16510 C2 domain Os01g0934100 protein (Putative shock protein) (cDNA clone:J023146J24, full insert sequence) Q942Z3 Q942Z3_ORYSJ Os01g0934100 Os01g0934100 OSNPB_010934100 P0423A12.31 P0492G09.1 ENOG411DYQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GEM-like protein 4-like ABA-responsive protein-like (Os02g0636700 protein) (cDNA clone:J023031H22, full insert sequence) Q6H5X2 Q6H5X2_ORYSJ Os02g0636700 OJ1581_H09.14 OsJ_07653 OSJNBa0014E22.8 OSNPB_020636700 ENOG411DYQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon Reticulon-like protein,Os02g0265900 protein,Reticulon-like protein (Fragment) Q6ETX5,A0A0P0VHC3,A0A0P0VHE6 Q6ETX5_ORYSJ,A0A0P0VHC3_ORYSJ,A0A0P0VHE6_ORYSJ P0006C08.29-1 Os02g0265900 OsJ_06173 OSNPB_020265900,Os02g0265900 OSNPB_020265900 ENOG411EGQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA His Kinase A (phospho-acceptor) domain NA NA NA NA NA NA NA ENOG411EGQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0568600 protein Q6YTF9 Q6YTF9_ORYSJ Os02g0568600 OSNPB_020568600 P0020D05.39 P0025F02.10 ENOG411EGQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQN Q2V3H6,Q2V493,Q2V3H5 DF306_ARATH,DF305_ARATH,DF307_ARATH Defensin-like protein 306,Putative defensin-like protein 305,Putative defensin-like protein 307 11266,11636,11014 Defensin-like protein 306,Putative defensin-like protein 305,Putative defensin-like protein 307 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],extracellular region [GO:0005576]; metal ion binding [GO:0046872]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640]; nodule morphogenesis [GO:0009878] locus:1009023368;,locus:1009023229;,locus:1009023315; AT4G17713,AT2G06166,AT4G17718 cell killing NA NA NA NA NA NA NA ENOG411EGQM Q8VXY1,Q9LKU5 Q8VXY1_ARATH,Q9LKU5_ARATH Glycine-rich protein (Uncharacterized protein At5g28630),LOW protein: ATP-dependent RNA helicase DRS1-like protein (Uncharacterized protein T10I18.2) 16023,14796 Glycine-rich protein (Uncharacterized protein At5g28630),LOW protein: ATP-dependent RNA helicase DRS1-like protein (Uncharacterized protein T10I18.2) helicase activity [GO:0004386] locus:2148845;,locus:2179063; AT5G28630,AT5G28610 NA NA NA NA NA NA NA NA ENOG411EGQK Q9SKE3 Q9SKE3_ARATH At2g46360/F11C10.5 (Uncharacterized protein At2g46360) 11682 At2g46360/F11C10.5 (Uncharacterized protein At2g46360) locus:2039149; AT2G46360 NA NA NA NA NA NA NA NA ENOG411EGQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQI A0A178VKE9 A0A178VKE9_ARATH Zinc-binding ribosomal protein family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 9736 Zinc-binding ribosomal protein family protein ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] Ribosomal protein S27 NA NA NA NA NA NA NA ENOG411EGQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 38 C-terminal domain NA NA NA NA NA NA NA ENOG411EGQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQF CEP5 Q058G9 PCEP5_ARATH Precursor of CEP5 (PCEP5) [Cleaved into: C-terminally encoded peptide 5 (CEP5)] DISRUPTION PHENOTYPE: Increased plant height with abnormal shoot gravitropic responses (PubMed:24179095). Longer primary root length and increased number of lateral roots initiation and primordia (PubMed:27296247). {ECO:0000269|PubMed:24179095, ECO:0000269|PubMed:27296247}. FUNCTION: Extracellular signaling peptide that represses plant growth rate. Regulates shoot gravitropic responses (PubMed:24179095). Represses primary root length and lateral root initiation, probably by repressing the CEP receptor CEPR1 (PubMed:24179096, PubMed:27296247). Regulates systemic nitrogen (N)-demand signaling. Mediates up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). {ECO:0000269|PubMed:24179095, ECO:0000269|PubMed:24179096, ECO:0000269|PubMed:25324386, ECO:0000269|PubMed:27296247}. 11585 Precursor of CEP5 (PCEP5) [Cleaved into: C-terminally encoded peptide 5 (CEP5)] apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; gravitropism [GO:0009630]; lateral root formation [GO:0010311]; negative regulation of developmental vegetative growth [GO:1905614]; nitrate import [GO:1902025]; primary root development [GO:0080022]; regulation of root development [GO:2000280]; response to ammonium ion [GO:0060359]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to gibberellin [GO:0009739]; response to nitrate starvation [GO:0090548]; response to nitrogen compound [GO:1901698]; response to osmotic stress [GO:0006970]; response to salicylic acid [GO:0009751] TISSUE SPECIFICITY: Mostly expressed in roots, and, at lower levels, in stems, leaves and flowers (PubMed:18315543, PubMed:24179095). Present in lateral root primordia (especially in vasculature and in the basal meristem) (PubMed:24179095, PubMed:27296247). Predominantly expressed in the phloem pole-associated pericycle (PPP) cells, and, to a lower extent, in the adjacent phloem (PubMed:27296247). Observed in lateral roots (especially in vasculature), root-hypocotyl junction, leaves, inflorescence stems and flowers (PubMed:24179095). {ECO:0000269|PubMed:18315543, ECO:0000269|PubMed:24179095, ECO:0000269|PubMed:27296247}. locus:505006719; AT5G66815 NA NA NA NA NA NA NA NA ENOG411EGQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Di19 NA NA NA NA NA NA NA ENOG411EGQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide methionine sulfoxide reductase NA NA NA NA NA NA NA ENOG411EGQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EGQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4-alpha-glucanotransferase NA NA NA NA NA NA NA ENOG411EGQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0041 NA NA NA NA NA NA NA ENOG411EGQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQ7 Q2V364,Q2V391,Q2V392,Q2V4J2 DEF23_ARATH,DEF22_ARATH,DEF25_ARATH,DEF26_ARATH Putative defensin-like protein 23,Defensin-like protein 22,Putative defensin-like protein 25,Putative defensin-like protein 26 8848,8935,8844,8939 Putative defensin-like protein 23,Defensin-like protein 22,Putative defensin-like protein 25,Putative defensin-like protein 26 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023494;,locus:1009023410;,locus:1009023481;,locus:1009023068; AT5G19315,AT5G08315,AT5G08055,AT1G33607 defensin-like protein NA NA NA NA NA NA NA ENOG411EGQ6 F4HYZ1 F4HYZ1_ARATH Uncharacterized protein 16249 Uncharacterized protein locus:504956104; AT1G68845 Inherit from euNOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411EGQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0545100 protein A0A0P0XQ30 A0A0P0XQ30_ORYSJ Os09g0545100 OSNPB_090545100 ENOG411EGQ4 HIPP12 Q9LTE3,A0A1P8BBY2 HIP12_ARATH,A0A1P8BBY2_ARATH Heavy metal-associated isoprenylated plant protein 12 (AtHIP12),Copper transport protein family FUNCTION: Probable heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 13225,11729 Heavy metal-associated isoprenylated plant protein 12 (AtHIP12),Copper transport protein family cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2149584; AT5G52740 Inherit from euNOG: Heavy-metal-associated domain-containing protein NA NA NA NA NA NA NA ENOG411EGQ3 CEP6 B3H5A9 PCEP6_ARATH Precursor of CEP6 (PCEP6) [Cleaved into: C-terminally encoded peptide 6.1 (CEP6.1) (CEP6a); C-terminally encoded peptide 6.2 (CEP6.2) (CEP6b)] FUNCTION: Extracellular signaling peptide that represses primary root growth rate. Modulates leaf morphology (PubMed:24179096). Regulates systemic nitrogen (N)-demand signaling. Mediates up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). {ECO:0000269|PubMed:24179096, ECO:0000269|PubMed:25324386}. 11222 Precursor of CEP6 (PCEP6) [Cleaved into: C-terminally encoded peptide 6.1 (CEP6.1) (CEP6a); C-terminally encoded peptide 6.2 (CEP6.2) (CEP6b)] apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; nitrate import [GO:1902025]; regulation of leaf morphogenesis [GO:1901371]; regulation of root development [GO:2000280]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed in lateral root primordia and in lateral roots excluding the meristem region. Also present in the aerial tissues, such as leaf petioles and the shoot apex region. {ECO:0000269|PubMed:25324386}. locus:4515103770; AT5G66816 NA NA NA NA NA NA NA NA ENOG411EGQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0554001 protein) Q109A0 Q109A0_ORYSJ Os10g0554001 LOC_Os10g40584 OSNPB_100554001 ENOG411E2WY F5K20_290 Q9M328,Q8LC99 Q9M328_ARATH,Q8LC99_ARATH AT3G53990 protein (AT3g53990) (AT3g53990/F5K20_290) (Adenine nucleotide alpha hydrolases-like superfamily protein) (Uncharacterized protein At3g53990) (Uncharacterized protein F5K20_290),Adenine nucleotide alpha hydrolases-like superfamily protein 17794,14249 AT3G53990 protein (AT3g53990) (AT3g53990/F5K20_290) (Adenine nucleotide alpha hydrolases-like superfamily protein) (Uncharacterized protein At3g53990) (Uncharacterized protein F5K20_290),Adenine nucleotide alpha hydrolases-like superfamily protein plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; hydrolase activity [GO:0016787]; chaperone-mediated protein folding [GO:0061077]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to oxidative stress [GO:0006979],hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2084525; AT3G53990 Universal stress protein Os05g0453700 protein (cDNA clone:J033048I03, full insert sequence),Os05g0453700 protein (Putative universal stress protein (USP)) B7EME6,Q7XXS5 B7EME6_ORYSJ,Q7XXS5_ORYSJ Os05g0453700 OSNPB_050453700,Os05g0453700 OJ1126_D01.10 OSNPB_050453700 ENOG411E2WB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os03g0111200 protein (Remorin, C-terminal region family protein, expressed) (cDNA clone:001-009-D11, full insert sequence) Q10SU0 Q10SU0_ORYSJ Os03g0111200 LOC_Os03g02040 Os03g0111200 OsJ_09134 OSNPB_030111200 ENOG411E2WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 Os03g0659700 protein (Fragment) Q0DPV4 Q0DPV4_ORYSJ Os03g0659700 Os03g0659700 OSNPB_030659700 ENOG411E2WG Q84K05,F4KCY1 Q84K05_ARATH,F4KCY1_ARATH Fcf2 pre-rRNA processing protein (Uncharacterized protein At1g54770),Fcf2 pre-rRNA processing protein 21680,22549 Fcf2 pre-rRNA processing protein (Uncharacterized protein At1g54770),Fcf2 pre-rRNA processing protein locus:2199455;,locus:504956387; AT1G54770,AT5G30495 rRNA-processing protein fcf2-like Acidic 82 kDa protein-like (Os02g0730500 protein) (cDNA clone:006-210-F08, full insert sequence) (cDNA clone:J023046D09, full insert sequence) Q6YWQ2 Q6YWQ2_ORYSJ Os02g0730500 OsJ_08259 OSJNBa0072H09.39 OSNPB_020730500 P0617A09.18 ENOG411E2WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family (UPF0081) Os01g0764700 protein (cDNA clone:J023122I17, full insert sequence) Q5JN17 Q5JN17_ORYSJ Os01g0764700 OSNPB_010764700 P0403C05.13 ENOG411E03R CRR4 O22137 PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 4) Plants have impaired NDH (chloroplast Na(P)DH dehydrogenase) activity. They do not display any phenotype in photosynthetic electron transport. NdhH is almost undetectable in this mutant. Plants are defective in RNA edition of the initiation codon of ndhD.,Plants have impaired NDH (chloroplast Na(P)DH dehydrogenase) activity. They do not display any phenotype in photosynthetic electron transport. A trace level of the protein NdhH is detectable in this mutant. Plants are defective in the RNA editing of the initiation codon of ndhD.,Plants have impaired NDH (chloroplast Na(P)DH dehydrogenase) activity. They do not display any phenotype in photosynthetic electron transport. The NdhH level is mildly affected in these plants (25-50%). Plants are defective in the RNA editing of the initiation codon of ndhD. Decreased post-illumination chlorophyll fluorescence; No other phenotypes detected-T. Shikanai-2005 FUNCTION: Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor to recruit C-deaminase (PubMed:15662426, PubMed:17015439). Involved in single RNA editing events. Required for the edition of the site 1 of ndhD (ndhD-1 site corresponding to cytidine-2), which is a plastid-encoded subunit of the NADH-plastoquinone oxidoreductase. The interaction with DYW1 is required for its function in editing the ndhD-1 site (PubMed:23001034). {ECO:0000269|PubMed:15662426, ECO:0000269|PubMed:17015439, ECO:0000269|PubMed:23001034}. MISCELLANEOUS: Unlike other RNA editing factors, CCR4 does not contain identifiable E(+) and DYW motifs but does contain PPR repeats. Therefore its association with DYW1, which lacks PPR repeats, but does contain E(+) and DYW motifs, is required for its function in RNA editing. {ECO:0000305|PubMed:23001034}. 69186 Pentatricopeptide repeat-containing protein At2g45350, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 4) chloroplast [GO:0009507]; vacuole [GO:0005773]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425]; mRNA modification [GO:0016556]; mRNA processing [GO:0006397] locus:2050857; AT2G45350 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E03V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0346600 protein Q84QS9 Q84QS9_ORYSJ P0410E11.136 Os08g0346600 OSNPB_080346600 P0404D10.5 ENOG411E03T Q9LXU6 Q9LXU6_ARATH At5g12930 (Inactive rhomboid protein) (Uncharacterized protein T24H18_90) 48570 At5g12930 (Inactive rhomboid protein) (Uncharacterized protein T24H18_90) locus:2182255; AT5G12930 NA Os09g0488600 protein C7J712 C7J712_ORYSJ Os09g0488600 OSNPB_090488600 ENOG411EF62 ENODL11 O82227,F4INN8 O82227_ARATH,F4INN8_ARATH Early nodulin-like protein 11 (Nodulin-like protein),Early nodulin-like protein 11 21803,24041 Early nodulin-like protein 11 (Nodulin-like protein),Early nodulin-like protein 11 integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2061406; AT2G23990 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EF61 T3A5.20 Q9SCR1 Q9SCR1_ARATH At3g50640 (Uncharacterized protein At3g50640) (Uncharacterized protein T3A5.20) 18604 At3g50640 (Uncharacterized protein At3g50640) (Uncharacterized protein T3A5.20) locus:2101684; AT3G50640 NA NA NA NA NA NA NA NA ENOG411EF60 BZIP1 Q9FGX2 BZIP1_ARATH Basic leucine zipper 1 (AtbZIP1) (bZIP protein 1) DISRUPTION PHENOTYPE: Reduced requirement for exogenous sugar for seedling growth and higher rates of true leaf development. {ECO:0000269|PubMed:20080816}. FUNCTION: Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response (PubMed:20080816, PubMed:21278122). Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter (PubMed:24243147). {ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:24243147}. 16224 Basic leucine zipper 1 (AtbZIP1) (bZIP protein 1) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; anther dehiscence [GO:0009901]; cellular response to glucose stimulus [GO:0071333]; cellular response to starvation [GO:0009267]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cellular amino acid metabolic process [GO:0006521]; response to bacterium [GO:0009617]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; sugar mediated signaling pathway [GO:0010182]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in seeds during late stage of development. {ECO:0000269|PubMed:18841482}. TISSUE SPECIFICITY: Expressed in both shoots, including young leaves, stipulae and trichomes (except in cotyledons and hypocotyl), and roots, including vascular tissues (e.g. in both the phloem and the xylem). Present in seeds and pollen. Restricted to vasculatures and roots in the presence of sucrose or glucose. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816}. locus:2157999; AT5G49450 Transcription factor NA NA NA NA NA NA NA ENOG411E032 Q8RXC1 Q8RXC1_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g78210) 35661 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g78210) hydrolase activity [GO:0016787] locus:2194744; AT1G78210 hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411E033 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0670100 protein A0A0P0VN93 A0A0P0VN93_ORYSJ Os02g0670100 OSNPB_020670100 ENOG411E037 MQM1.2 Q9LSZ5 Q9LSZ5_ARATH DNA-directed RNA polymerase III subunit RPC6 (RNA polymerase III subunit C6) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. {ECO:0000256|PIRNR:PIRNR028763}. R-ATH-1834949; 25879 DNA-directed RNA polymerase III subunit RPC6 (RNA polymerase III subunit C6) chloroplast [GO:0009507]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase III promoter [GO:0006383] locus:2171671; AT5G23710 rna polymerase DNA-directed RNA polymerase III subunit RPC6 (RNA polymerase III subunit C6),Os06g0603400 protein,Os04g0469450 protein Q69XJ1,Q0DB47,A0A0P0WB58 Q69XJ1_ORYSJ,Q0DB47_ORYSJ,A0A0P0WB58_ORYSJ P0486H12.36-1 Os06g0603400 OsJ_21900 OSNPB_060603400,Os06g0603400 Os06g0603400 OSNPB_060603400,Os04g0469450 OSNPB_040469450 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. {ECO:0000256|PIRNR:PIRNR028763}. ENOG411E034 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q6K5E6 Q6K5E6_ORYSJ Os09g0468000 Os09g0468000 OsJ_29692 OSNPB_090468000 P0676H02.7 ENOG411EF6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear serine protease which mediates apoptosis (By similarity) NA NA NA NA NA NA NA ENOG411EF6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Monothiol glutaredoxin-S8 P0C290 GRXS8_ORYSJ GRXS8 Os05g0149950 LOC_Os05g05730 OsJ_17135 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411EF6U XYP11 Q9ZVC7 XYP11_ARATH Xylogen-like protein 11 18089 Xylogen-like protein 11 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658] locus:2059242; AT2G27130 Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411E1MS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Ethylene responsive element binding factor3 (Os01g0797600 protein) (cDNA clone:006-304-H01, full insert sequence) Q7F4G5 Q7F4G5_ORYSJ Os01g0797600 Os01g0797600 OsJ_03753 OSNPB_010797600 P0699H05.40 ENOG411E1MC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BLE2 protein (Os07g0650600 protein) (cDNA clone:J013001L03, full insert sequence),Os07g0653900 protein,Os07g0649800 protein,Os07g0543500 protein (Putative BLE2 protein),Os07g0654700 protein (Putative BLE2 protein),Os07g0655000 protein,Os07g0648400 protein,Os07g0651800 protein (Fragment),Os07g0650600 protein (Fragment),Os07g0650100 protein,Os07g0654450 protein (Fragment),Os07g0648200 protein,Os07g0653151 protein,Os07g0650375 protein,Os07g0653200 protein,Os07g0654900 protein,Os07g0654000 protein,Os07g0655201 protein,Os07g0653050 protein,Os07g0651600 protein,Os07g0653000 protein,Os07g0650200 protein,Os07g0655101 protein,Os07g0650150 protein Q8H493,B9FUL5,A3BMW5,Q6Z5A8,Q8H3E9,A0A0P0X9W8,A0A0P0XAA7,A0A0P0X9K7,A0A0P0X9J0,A0A0P0X9R4,A0A0P0X9L5,A0A0P0X9P2,A0A0P0X9I5,A0A0P0XAC6,A0A0P0X9V4,A0A0P0X9I1,A0A0N7KNZ1,A0A0P0XA70,A0A0P0XA02,A0A0P0X9Q7,A0A0P0X9V1,A0A0P0X9G2,A0A0P0XA10,A0A0P0X9M5,A0A0P0X9H9 Q8H493_ORYSJ,B9FUL5_ORYSJ,A3BMW5_ORYSJ,Q6Z5A8_ORYSJ,Q8H3E9_ORYSJ,A0A0P0X9W8_ORYSJ,A0A0P0XAA7_ORYSJ,A0A0P0X9K7_ORYSJ,A0A0P0X9J0_ORYSJ,A0A0P0X9R4_ORYSJ,A0A0P0X9L5_ORYSJ,A0A0P0X9P2_ORYSJ,A0A0P0X9I5_ORYSJ,A0A0P0XAC6_ORYSJ,A0A0P0X9V4_ORYSJ,A0A0P0X9I1_ORYSJ,A0A0N7KNZ1_ORYSJ,A0A0P0XA70_ORYSJ,A0A0P0XA02_ORYSJ,A0A0P0X9Q7_ORYSJ,A0A0P0X9V1_ORYSJ,A0A0P0X9G2_ORYSJ,A0A0P0XA10_ORYSJ,A0A0P0X9M5_ORYSJ,A0A0P0X9H9_ORYSJ P0427D10.142 Os07g0650600 OSJNBa0084D17.4 OSNPB_070650600,Os07g0653900 OsJ_25402 OSNPB_070653900,Os07g0649800 OsJ_25383 OSNPB_070649800,Os07g0543500 Os07g0543500 OJ1729_E01.27 OsJ_24624 OSNPB_070543500,P0018C07.104 Os07g0654700 OSJNBb0003M19.33 OSNPB_070654700,Os07g0655000 OSNPB_070655000,Os07g0648400 OSNPB_070648400,Os07g0651800 OSNPB_070651800,Os07g0650600 OSNPB_070650600,Os07g0650100 OSNPB_070650100,Os07g0654450 OSNPB_070654450,Os07g0648200 OSNPB_070648200,Os07g0653151 OSNPB_070653151,Os07g0650375 OSNPB_070650375,Os07g0653200 OSNPB_070653200,Os07g0654900 OSNPB_070654900,Os07g0654000 OSNPB_070654000,Os07g0655201 OSNPB_070655201,Os07g0653050 OSNPB_070653050,Os07g0651600 OSNPB_070651600,Os07g0653000 OSNPB_070653000,Os07g0650200 OSNPB_070650200,Os07g0655101 OSNPB_070655101,Os07g0650150 OSNPB_070650150 ENOG411E1ME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyprenyl synthetase Os08g0193100 protein (Fragment) A0A0P0XDI7 A0A0P0XDI7_ORYSJ Os08g0193100 OSNPB_080193100 ENOG411E1MF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) Expressed protein (Os03g0801900 protein) (cDNA clone:002-103-A05, full insert sequence),Os07g0191600 protein (Fragment) Q10BX5,A0A0P0X3A1,A0A0P0X3T8 Q10BX5_ORYSJ,A0A0P0X3A1_ORYSJ,A0A0P0X3T8_ORYSJ LOC_Os03g58740 Os03g0801900 OSNPB_030801900,Os07g0191600 OSNPB_070191600 ENOG411E1M5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: peptidoglycan-binding domain containing Os06g0729900 protein A0A0P0X1M6 A0A0P0X1M6_ORYSJ Os06g0729900 OSNPB_060729900 ENOG411E1M7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os08g0359300 protein,Os08g0359300 protein (cDNA clone:J023107D13, full insert sequence) Q0J671,Q6YZK1 Q0J671_ORYSJ,Q6YZK1_ORYSJ Os08g0359300 Os08g0359300 OSNPB_080359300,Os08g0359300 OsJ_27039 OSNPB_080359300 P0488B06.39 ENOG411DSA9 ANNAT8 Q94CK4 ANXD8_ARATH Annexin D8 (AnnAt8) R-ATH-114608;R-ATH-6798695; 35762 Annexin D8 (AnnAt8) calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:505006606; AT5G12380 annexin-like protein RJ4-like Os01g0497400 protein (Fragment) A0A0P0V345 A0A0P0V345_ORYSJ Os01g0497400 OSNPB_010497400 ENOG411DSA5 FPS1,FPS2 Q09152,Q43315,A0A1P8B4W4,F4JNF1 FPPS1_ARATH,FPPS2_ARATH,A0A1P8B4W4_ARATH,F4JNF1_ARATH Farnesyl pyrophosphate synthase 1, mitochondrial (FPP synthase 1) (FPS 1) (EC 2.5.1.10) ((2E,6E)-farnesyl diphosphate synthase 1) (Dimethylallyltranstransferase 1) (EC 2.5.1.1) (Farnesyl diphosphate synthase 1) (Geranyltranstransferase 1),Farnesyl pyrophosphate synthase 2 (FPP synthase 2) (FPS 2) (EC 2.5.1.10) ((2E,6E)-farnesyl diphosphate synthase 2) (Dimethylallyltranstransferase 2) (EC 2.5.1.1) (Farnesyl diphosphate synthase 2) (Geranyltranstransferase 2),Farnesyl diphosphate synthase 2 FUNCTION: Catalyzes the sequential condensation of isopentenyl pyrophosphate with the allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultant geranylpyrophosphate to the ultimate product farnesyl pyrophosphate. PATHWAY: Isoprenoid biosynthesis; farnesyl diphosphate biosynthesis; farnesyl diphosphate from geranyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranyl diphosphate biosynthesis; geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate: step 1/1. ARA:AT5G47770-MONOMER;MetaCyc:AT5G47770-MONOMER;,ARA:AT4G17190-MONOMER;MetaCyc:AT4G17190-MONOMER; R-ATH-191273; 2.5.1.10; 2.5.1.1 44261,39826,35411,28758 Farnesyl pyrophosphate synthase 1, mitochondrial (FPP synthase 1) (FPS 1) (EC 2.5.1.10) ((2E,6E)-farnesyl diphosphate synthase 1) (Dimethylallyltranstransferase 1) (EC 2.5.1.1) (Farnesyl diphosphate synthase 1) (Geranyltranstransferase 1),Farnesyl pyrophosphate synthase 2 (FPP synthase 2) (FPS 2) (EC 2.5.1.10) ((2E,6E)-farnesyl diphosphate synthase 2) (Dimethylallyltranstransferase 2) (EC 2.5.1.1) (Farnesyl diphosphate synthase 2) (Geranyltranstransferase 2),Farnesyl diphosphate synthase 2 cytosol [GO:0005829]; mitochondrion [GO:0005739]; dimethylallyltranstransferase activity [GO:0004161]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; cholesterol biosynthetic process [GO:0006695]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384],cytosol [GO:0005829]; dimethylallyltranstransferase activity [GO:0004161]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; cholesterol biosynthetic process [GO:0006695]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384],transferase activity [GO:0016740]; isoprenoid biosynthetic process [GO:0008299],isoprenoid biosynthetic process [GO:0008299] TISSUE SPECIFICITY: The FPS1L mRNA accumulates preferentially in inflorescences, whereas the FPS1S mRNA is predominantly expressed in roots and inflorescences. locus:2160947;,locus:2130654; AT5G47770,AT4G17190 Farnesyl Farnesyl diphosphate synthase (Farnesyl pyrophosphate synthase) (EC 2.5.1.1) (EC 2.5.1.10) (Os01g0703400 protein) (Putative farnesyl pyrophosphate synthetase) (cDNA clone:001-036-D06, full insert sequence),Os05g0543400 protein (Putative farnesyl pyrophosphate synthase) (cDNA clone:J023072A14, full insert sequence) (cDNA clone:J033069I20, full insert sequence),Os01g0695300 protein (Putative farnesyl-pyrophosphate synthetase fps2),Os04g0657100 protein (cDNA clone:J023137P20, full insert sequence) O04882,Q65XM9,Q5N9P6,Q0J9F2 O04882_ORYSJ,Q65XM9_ORYSJ,Q5N9P6_ORYSJ,Q0J9F2_ORYSJ FPPS1 Os01g0703400 OSNPB_010703400 P0421H07.25,Os05g0543400 OJ1288_A07.10 OsJ_19411 OSNPB_050543400,Os01g0695300 Os01g0695300 OSNPB_010695300 P0431H09.30,Os04g0657100 Os04g0657100 OsJ_16465 OSNPB_040657100 ENOG411DSA7 PCMP-H22 Q9CAA8,A0A1P8ANL0 PP108_ARATH,A0A1P8ANL0_ARATH Putative pentatricopeptide repeat-containing protein At1g68930,Pentatricopeptide (PPR) repeat-containing protein 82749,79789 Putative pentatricopeptide repeat-containing protein At1g68930,Pentatricopeptide (PPR) repeat-containing protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451],zinc ion binding [GO:0008270] locus:2205425; AT1G68930 Pentatricopeptide repeat-containing protein Os02g0106300 protein (Putative pentatricopeptide (PPR) repeat-containing protein-like protein) (cDNA clone:002-164-G08, full insert sequence) Q6ETD1 Q6ETD1_ORYSJ Os02g0106300 Os02g0106300 OJ1359_D06.22 OSNPB_020106300 ENOG411DSA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA arginine decarboxylase Arginine decarboxylase 2 (ARGDC2) (OsADC2) (EC 4.1.1.19) Q7XRA1 ADC2_ORYSJ ADC2 Os04g0107600 LOC_Os04g01690 OsJ_13525 OSJNBb0085F13.14 ENOG411DSAH PBL16 Q9FM85 PBL16_ARATH Probable serine/threonine-protein kinase PBL16 (EC 2.7.11.1) (PBS1-like protein 16) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 45871 Probable serine/threonine-protein kinase PBL16 (EC 2.7.11.1) (PBS1-like protein 16) plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2161093; AT5G56460 receptor-like protein kinase Os03g0159100 protein (Protein kinase APK1B, chloroplast, putative, expressed) (cDNA clone:J013030N19, full insert sequence) Q10RH3 Q10RH3_ORYSJ LOC_Os03g06330 Os03g0159100 OsJ_09482 OSNPB_030159100 ENOG411DSAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein kinase Os01g0670300 protein,Os01g0669100 protein (S-receptor kinase PK3-like) (cDNA clone:J013102N03, full insert sequence),Os01g0668600 protein (S-receptor kinase PK3-like),Os01g0670100 protein,Os01g0885700 protein,Os01g0668901 protein,Os12g0177800 protein,Os01g0668400 protein A2ZWE1,Q8W054,Q8W059,Q0JKJ3,Q0JH38,A0A0P0V6E9,A0A0P0Y7N1,A0A0P0V6A7 A2ZWE1_ORYSJ,Q8W054_ORYSJ,Q8W059_ORYSJ,Q0JKJ3_ORYSJ,Q0JH38_ORYSJ,A0A0P0V6E9_ORYSJ,A0A0P0Y7N1_ORYSJ,A0A0P0V6A7_ORYSJ Os01g0670300 OsJ_02957 OSNPB_010670300,P0014E08.23-1 P0047F09.1-1 Os01g0669100 OsJ_02955 OSNPB_010669100,Os01g0668600 Os01g0668600 OSJNBb0063G05.43 OSNPB_010668600 P0014E08.13,Os01g0670100 Os01g0670100 OsJ_02956 OSNPB_010670100,Os01g0885700 Os01g0885700 OSNPB_010885700,Os01g0668901 OSNPB_010668901,Os12g0177800 OSNPB_120177800,Os01g0668400 OSNPB_010668400 ENOG411DSAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Adenylate kinase Probable adenylate kinase 6, chloroplastic (EC 2.7.4.3) (Adenylate monophosphate kinase 6),Os04g0671100 protein (Fragment) Q7XR47,A0A0P0WGF9 KAD6_ORYSJ,A0A0P0WGF9_ORYSJ Os04g0671100 LOC_Os04g57540 OSJNBa0043A12.38,Os04g0671100 OSNPB_040671100 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ENOG411DTAH Q58FY5,Q4PL95,F4IH20 Q58FY5_ARATH,Q4PL95_ARATH,F4IH20_ARATH Autophagy-like protein,Autophagy-like protein (Uncharacterized protein At2g40316) 22798,30043,20850 Autophagy-like protein,Autophagy-like protein (Uncharacterized protein At2g40316) integral component of membrane [GO:0016021] locus:2828312; AT2G40316 NA Expressed protein (Os03g0296700 protein) Q10MS9 Q10MS9_ORYSJ Os03g0296700 LOC_Os03g18540 Os03g0296700 OSNPB_030296700 ENOG411E223 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411E222 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os07g0564533 protein (Os08g0344800 protein) (Fragment),Os03g0563400 protein,Os04g0542100 protein (Fragment),Os01g0802400 protein (Fragment) A0A0P0XEY8,A0A0P0VZA9,A0A0P0WD76,A0A0P0V9D9 A0A0P0XEY8_ORYSJ,A0A0P0VZA9_ORYSJ,A0A0P0WD76_ORYSJ,A0A0P0V9D9_ORYSJ Os08g0344800 Os07g0564533 OSNPB_070564533 OSNPB_080344800,Os03g0563400 OSNPB_030563400,Os04g0542100 OSNPB_040542100,Os01g0802400 OSNPB_010802400 ENOG411E221 DOF4.6,DOF2.5 Q8LAP8,Q9ZPY0 DOF46_ARATH,DOF25_ARATH Dof zinc finger protein DOF4.6 (AtDOF4.6),Dof zinc finger protein DOF2.5 (AtDOF2.5) (Dof affecting germination 2) Tall inflorescence stems; Low germination rate in the dark and at low temperature-P. Vittorioso-2002 FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.,FUNCTION: Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. MISCELLANEOUS: The regulatory role of DOF2.5/DAG2 appears to be opposite to that of DOF3.7/DAG1. Both zinc finger proteins may act on a maternal switch that controls seed germination, possibly by regulating the same gene(s). 37348,40537 Dof zinc finger protein DOF4.6 (AtDOF4.6),Dof zinc finger protein DOF2.5 (AtDOF2.5) (Dof affecting germination 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to red light [GO:0071491]; cellular response to water stimulus [GO:0071462]; positive regulation of gibberellin biosynthetic process [GO:0010372]; positive regulation of seed germination [GO:0010030]; red light signaling pathway [GO:0010161]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. locus:2134981;,locus:2039959; AT4G24060,AT2G46590 zinc finger protein NA NA NA NA NA NA NA ENOG411E220 GATL10 Q9LHD2 GATLA_ARATH Probable galacturonosyltransferase-like 10 (EC 2.4.1.-) (Galactinol synthase 8) (AtGolS8) (GolS-8) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 41177 Probable galacturonosyltransferase-like 10 (EC 2.4.1.-) (Galactinol synthase 8) (AtGolS8) (GolS-8) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489]; polysaccharide biosynthetic process [GO:0000271]; response to oxidative stress [GO:0006979] locus:2095420; AT3G28340 Galacturonosyltransferase-like NA NA NA NA NA NA NA ENOG411E227 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM NA NA NA NA NA NA NA ENOG411E226 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative lysophospholipase NA NA NA NA NA NA NA ENOG411E225 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region Os01g0695700 protein A0A0P0V6W6 A0A0P0V6W6_ORYSJ Os01g0695700 OSNPB_010695700 ENOG411E224 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain NA NA NA NA NA NA NA ENOG411E229 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os08g0551500 protein Q6Z3H4 Q6Z3H4_ORYSJ Os08g0551500 OsJ_28208 OSJNBb0011H15.13 OSNPB_080551500 ENOG411E228 MIZ1 O22227 MIZ1_ARATH Protein MIZU-KUSSEI 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are impaired in hydrotropic response. {ECO:0000269|PubMed:17360591}. Mutant roots are defective in hydrotropism and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. Reduced hydrotropism-H. Takahashi-2007 FUNCTION: Plays a role in lateral root development by maintaining auxin levels. This function requires GNOM (GN/MIZ2) activity. Negatively regulates cytokinin sensitivity on root development. Positively regulates hydrotropism in roots. {ECO:0000269|PubMed:17360591, ECO:0000269|PubMed:21940997, ECO:0000269|PubMed:22285304, ECO:0000269|PubMed:22321255, ECO:0000269|PubMed:23012350}. MISCELLANEOUS: The Japanese words 'mizu' and 'kussei' means water and tropism, respectively (PubMed:17360591). Plants over-expressing MIZ1 in roots have a reduced number of lateral roots formed, however this defect is recovered with the application of auxin (PubMed:21940997). {ECO:0000305|PubMed:17360591, ECO:0000305|PubMed:21940997}. 32510 Protein MIZU-KUSSEI 1 cortical endoplasmic reticulum [GO:0032541]; cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; membrane [GO:0016020]; chloroplast organization [GO:0009658]; hydrotropism [GO:0010274] TISSUE SPECIFICITY: Expressed in root meristematic region, cortical cells, lateral root cap cells, columella cells of the root cap, mature region of the roots and leaf hydathodes. {ECO:0000269|PubMed:17360591, ECO:0000269|PubMed:22285304}. locus:2062647; AT2G41660 Protein of unknown function DUF617 Os02g0709600 protein Q6ZFZ3,Q0DY83 Q6ZFZ3_ORYSJ,Q0DY83_ORYSJ OJ1311_H06.6-2 Os02g0709600 OSNPB_020709600,Os02g0709600 Os02g0709600 OSNPB_020709600 ENOG411EJ2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os10g0484632 protein A0A0P0XWF0 A0A0P0XWF0_ORYSJ Os10g0484632 OSNPB_100484632 ENOG411EJ2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA A49-like RNA polymerase I associated factor NA NA NA NA NA NA NA ENOG411EJ2S Q9SIX0,Q9SIW9 FB106_ARATH,FB107_ARATH Putative F-box protein At2g16290,F-box protein At2g16300 47835,37459 Putative F-box protein At2g16290,F-box protein At2g16300 chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; base-excision repair [GO:0006284]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724] locus:2042669;,locus:2042654; AT2G16290,AT2G16300 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EJ2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: dual-specificity tyrosine-(Y)-phosphorylation regulated kinase Os03g0719500 protein (Fragment) A0A0P0W2C7 A0A0P0W2C7_ORYSJ Os03g0719500 OSNPB_030719500 ENOG411EJ2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EJ2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411EJ2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411EJ2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MUTSac NA NA NA NA NA NA NA ENOG411EJ2K PERK1 Q9LV48 PERK1_ARATH Proline-rich receptor-like protein kinase PERK1 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 1) (AtPERK1) 2.7.11.1 69272 Proline-rich receptor-like protein kinase PERK1 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 1) (AtPERK1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777]; response to fungus [GO:0009620]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Mostly expressed in inflorescence bolt, flower buds and siliques, and, to a lower extent, in roots, seedlings and leaves. {ECO:0000269|PubMed:15653807}. locus:2091722; AT3G24550 STYKc NA NA NA NA NA NA NA ENOG411EJ2J Q9LPW2,Q9SAF4,Q9LPW4 FBK2_ARATH,FBK3_ARATH,FB7_ARATH Putative F-box/kelch-repeat protein At1g12870,Putative F-box/kelch-repeat protein At1g13200,Putative F-box protein At1g12855 48406,50874,53334 Putative F-box/kelch-repeat protein At1g12870,Putative F-box/kelch-repeat protein At1g13200,Putative F-box protein At1g12855 vacuolar membrane [GO:0005774] locus:2010316;,locus:2031845;,locus:6530298137; AT1G12870,AT1G13200,AT1G12855 F-box associated NA NA NA NA NA NA NA ENOG411EJ2I GIP1L,GIP1 A4FVR1,Q8VZS6 GIP1L_ARATH,GIP1_ARATH GBF-interacting protein 1-like (Protein GIP1-like),GBF-interacting protein 1 FUNCTION: May act as a transcriptional coactivator of LOB domain-containing proteins. {ECO:0000250|UniProtKB:Q8VZS6}.,FUNCTION: Plant specific protein that enhances G-box-binding factor (GBF) DNA binding activity. May function as a nuclear chaperone or lever and regulate the multimeric state of GBFs. May contribute to bZIP-mediated gene regulation. Is able to refold denatured rhodanese in vitro (PubMed:16117846, PubMed:25387999). Reduces DNA-binding activity of BZIP16, BZIP68 and GBF1 under non-reducing conditions through direct physical interaction. Act as negative co-regulator in red and blue light-mediated hypocotyl elongation. Functions to promote hypocotyl elongation during the early stages of seedling development by regulating the repression effect by BZIP16 and the activation effect by BZIP68 and GBF1 on LHCB2.4 expression (PubMed:25387999). Enhances transcriptional activity of LBD18 in the EXP14 promoter. May act as a transcriptional coactivator of LBD18 (PubMed:24484953). {ECO:0000269|PubMed:16117846, ECO:0000269|PubMed:24484953, ECO:0000269|PubMed:25387999}. 61877,61812 GBF-interacting protein 1-like (Protein GIP1-like),GBF-interacting protein 1 nucleus [GO:0005634],nucleus [GO:0005634]; identical protein binding [GO:0042802]; unfolded protein binding [GO:0051082]; positive regulation of DNA binding [GO:0043388] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:24484953}. locus:2012015;,locus:2090019; AT1G55820,AT3G13222 Protein of unknown function (DUF1296) NA NA NA NA NA NA NA ENOG411EJ2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POPLD (NUC188) domain NA NA NA NA NA NA NA ENOG411EJ2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EJ2C Q9ZUH0,Q8S8L1 FBK35_ARATH,Q8S8L1_ARATH F-box/kelch-repeat protein At2g24250,LOW protein: F-box/kelch-repeat protein (Uncharacterized protein At2g24255) 42361,37927 F-box/kelch-repeat protein At2g24250,LOW protein: F-box/kelch-repeat protein (Uncharacterized protein At2g24255) chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; base-excision repair [GO:0006284]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724] locus:2047545;,locus:505006269; AT2G24250,AT2G24255 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EJ2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GH3 auxin-responsive promoter Os07g0576500 protein A0A0P0X7W0 A0A0P0X7W0_ORYSJ Os07g0576500 OSNPB_070576500 ENOG411EJ2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EJ2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ2E A0A1P8AR91,A0A1P8AR77,A0A1P8ARC2,F4I9U9 A0A1P8AR91_ARATH,A0A1P8AR77_ARATH,A0A1P8ARC2_ARATH,F4I9U9_ARATH Ubiquitin carboxyl-terminal hydrolase-related protein 111880,117776,123634,123892 Ubiquitin carboxyl-terminal hydrolase-related protein hydrolase activity [GO:0016787]; nucleic acid binding [GO:0003676] locus:2200370; AT1G65130 Protein of unknown function (DUF627) NA NA NA NA NA NA NA ENOG411EJ29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1929) NA NA NA NA NA NA NA ENOG411EJ28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TraB family NA NA NA NA NA NA NA ENOG411EJ23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411EJ22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ21 F5O8.19 Q9ZUD1,F4I698,F4IGQ5 Q9ZUD1_ARATH,F4I698_ARATH,F4IGQ5_ARATH F5O8.19 protein (OBP32pep protein),Uncharacterized protein 30317,30524,34281 F5O8.19 protein (OBP32pep protein),Uncharacterized protein locus:2028901;,locus:2028921;,locus:2041980; AT1G23640,AT1G23660,AT2G27670 Domain of unknown function DUF220 NA NA NA NA NA NA NA ENOG411EJ20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EJ26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os05g0326675 protein A0A0P0WKQ7 A0A0P0WKQ7_ORYSJ Os05g0326675 OSNPB_050326675 ENOG411EJ25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR NA NA NA NA NA NA NA ENOG411EJ24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E22C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transcription factor Y subunit HAP2 subunit of HAP complex (Os07g0608200 protein) (cDNA clone:J033058N01, full insert sequence),CCAAT-binding transcription factor (CCAAT-box transcription factor complex WHAP3, putative, expressed) (Os03g0411100 protein) (Putative CCAAT-binding transcription factor) (cDNA clone:001-045-F05, full insert sequence) Q0D4R9,Q852G5 Q0D4R9_ORYSJ,Q852G5_ORYSJ OsHAP2G Os07g0608200 OSNPB_070608200,Os03g0411100 LOC_Os03g29760 Os03g0411100 Os03g29760 OSNPB_030411100 ENOG411E22B O23684 O23684_ARATH At2g41950/T6D20.26 (DNA-directed RNA polymerase subunit beta) (Uncharacterized protein At2g41950) 30021 At2g41950/T6D20.26 (DNA-directed RNA polymerase subunit beta) (Uncharacterized protein At2g41950) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plant-type cell wall [GO:0009505]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2064596; AT2G41950 NA Expressed protein (Os03g0226700 protein) Q8H855 Q8H855_ORYSJ Os03g0226700 LOC_Os03g12560 Os03g0226700 OJ1626B05.2 OsJ_09995 OSNPB_030226700 ENOG411E22A GSTU19,GSTU24,GSTU20,GSTU25 Q9ZRW8,Q9SHH6,Q8L7C9,Q9SHH7 GSTUJ_ARATH,GSTUO_ARATH,GSTUK_ARATH,GSTUP_ARATH Glutathione S-transferase U19 (AtGSTU19) (EC 2.5.1.18) (GST class-tau member 19) (Glutathione S-transferase 8),Glutathione S-transferase U24 (AtGSTU24) (EC 2.5.1.18) (GST class-tau member 24),Glutathione S-transferase U20 (AtGSTU20) (EC 2.5.1.18) (FIN219-interacting protein 1) (GST class-tau member 20),Glutathione S-transferase U25 (AtGSTU25) (EC 2.5.1.18) (GST class-tau member 25) DISRUPTION PHENOTYPE: Hyposensitive hypocotyl phenotype under continuous far red (cFR) light and a delayed flowering phenotype under long-day conditions. {ECO:0000269|PubMed:17220357}. As for the root growth assay the root elongation of both the mutant and the wild-type was inhibited at lower concentrations of TNT than 26-DNT. In addition there was no statistically significant difference of the root elongation between the gst mutant and the wild-type exposed to different concentrations of 26-DNT and TNT from t-test.,The plants took up TNT faster than 26-DNT. Over 99% of the initial concentration of TNT was removed by the plants after 1 d whereas 30% was removed for 26-DNT at the same period of time. FUNCTION: Catalyzes the glutathionylation of 12-oxophytodienoate (OPDA). In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and benzyl isothiocyanate (BITC), and glutathione peroxidase activity toward cumene hydroperoxide. {ECO:0000269|PubMed:12090627, ECO:0000269|PubMed:16361527, ECO:0000269|PubMed:19520850}.,FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}.,FUNCTION: Exhibits glutathione-dependent thiol transferase activities. Can use glutathione (GSH) and 1-chloro-2,4-dinitrobenzene (CDNB) as substrates. Involved in the regulation of far-red light influence on development. {ECO:0000269|PubMed:17220357}. ARA:AT1G78380-MONOMER;MetaCyc:AT1G78380-MONOMER;,ARA:AT1G17170-MONOMER;MetaCyc:AT1G17170-MONOMER;,ARA:AT1G78370-MONOMER;,ARA:AT1G17180-MONOMER; 2.5.1.18; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25651,25306,25006,25591 Glutathione S-transferase U19 (AtGSTU19) (EC 2.5.1.18) (GST class-tau member 19) (Glutathione S-transferase 8),Glutathione S-transferase U24 (AtGSTU24) (EC 2.5.1.18) (GST class-tau member 24),Glutathione S-transferase U20 (AtGSTU20) (EC 2.5.1.18) (FIN219-interacting protein 1) (GST class-tau member 20),Glutathione S-transferase U25 (AtGSTU25) (EC 2.5.1.18) (GST class-tau member 25) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; peroxidase activity [GO:0004601]; cellular response to water deprivation [GO:0042631]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; 2,4,6-trinitrotoluene catabolic process [GO:0046256]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; enzyme binding [GO:0019899]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; regulation of growth [GO:0040008]; regulation of response to red or far red light [GO:2000030]; response to cytokinin [GO:0009735]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; 2,4,6-trinitrotoluene catabolic process [GO:0046256]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] DEVELOPMENTAL STAGE: Light-dependent expression. Developmentally regulated. First observed in cotyledon vascular tissues of young seedlings. Appears at the shoot apex, in the upper part of hypocotyls and in roots in one week old seedlings. Later highly expressed in the basal portion of trichomes, veins, shoot apex, and hypocotyls. Becomes restricted to the margins of leaves and in roots. In drakness and blue light (B) grown plants, localized in cotyledons vascular tissues. In far-red (FR) and red (R) light conditions, mostly confined to regions of vascular tissues near the hydathode of cotyledons. In adult plants, expressed in vascular tissues of flower organs. {ECO:0000269|PubMed:17220357}. TISSUE SPECIFICITY: Mostly associated with vascular tissues, especially near hydathodes. {ECO:0000269|PubMed:17220357}. locus:2032100;,locus:2020322;,locus:2032020;,locus:2020312; AT1G78380,AT1G17170,AT1G78370,AT1G17180 glutathione s-transferase Os09g0367700 protein (Fragment) Q0J294 Q0J294_ORYSJ Os09g0367700 OSNPB_090367700 ENOG411E22G AP180 Q9ZVN6 AP180_ARATH Clathrin coat assembly protein AP180 (At-AP180) (Clathrin coat-associated protein AP180) FUNCTION: Adaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Binding of AP180 to clathrin triskelia promotes their assembly into 70-90 nm coats cages. {ECO:0000269|PubMed:15054111}. 72172 Clathrin coat assembly protein AP180 (At-AP180) (Clathrin coat-associated protein AP180) clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897]; protein transport [GO:0015031] locus:2205558; AT1G05020 clathrin coat assembly protein NA NA NA NA NA NA NA ENOG411E22F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD dependent oxidoreductase Os01g0316100 protein A0A0P0V1M3 A0A0P0V1M3_ORYSJ Os01g0316100 OSNPB_010316100 ENOG411E22E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GPI-anchored protein At4g28100 Os02g0710700 protein A0A0N7KFZ1 A0A0N7KFZ1_ORYSJ Os02g0710700 OSNPB_020710700 ENOG411E22D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS-box transcription factor MADS-box transcription factor 34 (OsMADS34) (RMADS212/RMADS217/RMADS221) Q6Q9H6 MAD34_ORYSJ MADS34 Os03g0753100 LOC_Os03g54170 OJ1112_G08.14 OSJNBa0032E21.03 OSJNBa0047E24.1 FUNCTION: Probable transcription factor. ENOG411E22K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0691700 protein (cDNA, clone: J065162K07, full insert sequence),Os03g0298700 protein Q84NR1,A0A0N7KH39 Q84NR1_ORYSJ,A0A0N7KH39_ORYSJ P0034A04.110 Os07g0691700 OSNPB_070691700,Os03g0298700 OSNPB_030298700 ENOG411E22J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor BZIP transcription factor family protein, expressed (Os10g0531900 protein) (Putative transcription factor) Q8LN44 Q8LN44_ORYSJ LOC_Os10g38820 Os10g0531900 OSJNBa0053C23.13 OSNPB_100531900 ENOG411E22I C7A10.50 Q9SW67 Q9SW67_ARATH Cytochrome P450, family 81, subfamily H, polypeptide 1 (Cytochrome P450-like protein) ARA:AT4G37310-MONOMER; 58228 Cytochrome P450, family 81, subfamily H, polypeptide 1 (Cytochrome P450-like protein) membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550] locus:2114965; AT4G37310 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411E22H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPPc NA NA NA NA NA NA NA ENOG411E22N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mur ligase family glutamate ligase domain NA NA NA NA NA NA NA ENOG411E22M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411E22S ENODL18 O82083 O82083_ARATH Early nodulin-like protein 18 (T27G7.18) (Uncharacterized protein At1g08500; T27G7.18) (Uncharacterized protein T27G7.18) 24904 Early nodulin-like protein 18 (T27G7.18) (Uncharacterized protein At1g08500; T27G7.18) (Uncharacterized protein T27G7.18) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2201801; AT1G08500 Plastocyanin-like domain OSJNBa0036E02.28 protein (Os01g0281600 protein) (cDNA clone:001-105-E02, full insert sequence) Q9FTP2 Q9FTP2_ORYSJ OSJNBa0036E02.28 Os01g0281600 B1085F09.28 OsJ_01327 OSNPB_010281600 ENOG411E22R Q8L7A5 Q8L7A5_ARATH Expressed protein (TRAF-type zinc finger-like protein) 21848 Expressed protein (TRAF-type zinc finger-like protein) integral component of membrane [GO:0016021] locus:2024351; AT1G09920 TRAF-type zinc finger domain-containing protein Os07g0657500 protein (cDNA clone:J033113G11, full insert sequence),Os07g0657500 protein (XIAP associated factor-1-like protein),Os03g0356652 protein (TRAF-type zinc finger, putative, expressed) (cDNA clone:J023123D15, full insert sequence) Q0D3Z6,Q7XAN2,Q10L76 Q0D3Z6_ORYSJ,Q7XAN2_ORYSJ,Q10L76_ORYSJ Os07g0657500 Os07g0657500 OSNPB_070657500,OJ1477_F01.104-1 Os07g0657500 P0047B07.125-1 OsJ_25427 OSNPB_070657500,Os03g0356652 LOC_Os03g24184 Os03g0356652 OSNPB_030356652 ENOG411E22Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SacI homology domain Os06g0195600 protein (Putative Sac domain-containing inositol phosphatase 3) Q69YB0 Q69YB0_ORYSJ Os06g0195600 OsJ_20438 OSNPB_060195600 P0528E04.14 ENOG411E22P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Probable serine/threonine-protein kinase WNK3 (OsWNK3) (EC 2.7.11.1) (Protein kinase with no lysine 3),Os07g0185000 protein (Fragment) Q0D847,A0A0P0X344 WNK3_ORYSJ,A0A0P0X344_ORYSJ WNK3 Os07g0185000 LOC_Os07g08750 OJ1046_F10.129-1,Os07g0185000 OSNPB_070185000 ENOG411E22W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os08g0239300 protein (cDNA clone:006-203-B07, full insert sequence),Dienelactone hydrolase family, putative (Os11g0275500 protein),Endo-1,31,4-beta-D-glucanase, putative, expressed (Os11g0275200 protein) (cDNA clone:006-302-G07, full insert sequence),Os08g0238200 protein (cDNA clone:J013096H10, full insert sequence),Os08g0238200 protein,Os08g0238600 protein,Os08g0238500 protein,Os11g0275000 protein Q0J722,Q53Q89,Q0ITC0,Q0J728,A0A0P0XDS0,A0A0P0XDK6,A0A0P0XDC1,A0A0P0Y160 Q0J722_ORYSJ,Q53Q89_ORYSJ,Q0ITC0_ORYSJ,Q0J728_ORYSJ,A0A0P0XDS0_ORYSJ,A0A0P0XDK6_ORYSJ,A0A0P0XDC1_ORYSJ,A0A0P0Y160_ORYSJ Os08g0239300 Os08g0239300 OsJ_26539 OSNPB_080239300,Os11g0275500 LOC_Os11g17540 Os11g0275500 OSNPB_110275500,Os11g0275200 LOC_Os11g17504 Os11g0275200 OSNPB_110275200,Os08g0238200 Os08g0238200 OSNPB_080238200,Os08g0238200 OSNPB_080238200,Os08g0238600 OSNPB_080238600,Os08g0238500 OSNPB_080238500,Os11g0275000 OSNPB_110275000 ENOG411E22V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os01g0566800 protein A0A0P0V4E3 A0A0P0V4E3_ORYSJ Os01g0566800 OSNPB_010566800 ENOG411E22U Q8LEB6 Y5185_ARATH Probable receptor-like protein kinase At5g18500 (EC 2.7.11.1) 2.7.11.1 54213 Probable receptor-like protein kinase At5g18500 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2146203; AT5G18500 receptor-like protein kinase NA NA NA NA NA NA NA ENOG411E22T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C Os05g0427900 protein A0A0P0WMP4 A0A0P0WMP4_ORYSJ Os05g0427900 OSNPB_050427900 ENOG411E22Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phenylalanine ammonia-lyase Phenylalanine ammonia-lyase (EC 4.3.1.24),Os02g0626100 protein (Fragment) P14717,A0A0P0VLX6,A0A0P0VM36 PAL1_ORYSJ,A0A0P0VLX6_ORYSJ,A0A0P0VM36_ORYSJ PAL Os02g0626100 LOC_Os02g41630 B1215B07.42 OsJ_07592 P0042D01.1,Os02g0626100 OSNPB_020626100 FUNCTION: This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton. ENOG411E22Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-Box protein Os02g0812500 protein (Phloem-specific lectin-like) (cDNA clone:002-119-B02, full insert sequence) Q6K3F6 Q6K3F6_ORYSJ Os02g0812500 OSJNBa0053L11.11 OSNPB_020812500 P0016F11.33 ENOG411E22X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphofructokinase ATP-dependent 6-phosphofructokinase (ATP-PFK) (Phosphofructokinase) (EC 2.7.1.11) (Phosphohexokinase) Q65X97 Q65X97_ORYSJ Os05g0524400 PFK Os05g0524400 OJ1593_C11.1 OSJNBa0075A10.18 OSNPB_050524400 FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000256|HAMAP-Rule:MF_03186}. ENOG411DYFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Poly-adenylate binding protein unique domain Os06g0589700 protein Q0DB96 Q0DB96_ORYSJ Os06g0589700 Os06g0589700 OSNPB_060589700 ENOG411EA4R F5K20_100,Fes1B Q9M346,A0A1I9LNM7 Q9M346_ARATH,A0A1I9LNM7_ARATH Fes1B (Uncharacterized protein F5K20_100),Fes1B 40854,36507 Fes1B (Uncharacterized protein F5K20_100),Fes1B locus:2084365; AT3G53800 armadillo beta-catenin repeat family protein NA NA NA NA NA NA NA ENOG411EAJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI Os10g0186200 protein (Fragment) A0A0P0XTE3 A0A0P0XTE3_ORYSJ Os10g0186200 OSNPB_100186200 ENOG411EAJX BHLH32 Q9LS08 BH032_ARATH Transcription factor AIG1 (AtAIG1) (Basic helix-loop-helix protein 32) (AtbHLH32) (bHLH 32) (Protein TARGET OF MOOPTEROS 5) (Transcription factor EN 54) (bHLH transcription factor bHLH032) DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy with BHLH30. {ECO:0000269|PubMed:20220754}. Mutants showed elevated expression of PPCK under Pi starvation. Under high levels of Pi root hair formation is not suppressed in mutants and they contained significantly more total Pi and more anthocyanin than the wild-type. DFR expression in Pi-sufficient conditions was substantially increased in the bhlh32 mutant. FUNCTION: Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. 39497 Transcription factor AIG1 (AtAIG1) (Basic helix-loop-helix protein 32) (AtbHLH32) (bHLH 32) (Protein TARGET OF MOOPTEROS 5) (Transcription factor EN 54) (bHLH transcription factor bHLH032) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anthocyanin-containing compound biosynthetic process [GO:0009718]; cellular response to phosphate starvation [GO:0016036]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; root hair cell development [GO:0080147]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: At the globular stage, expressed in cells adjacent to the hypophysis and at later embryonic stages, specific for vascular tissues. {ECO:0000269|PubMed:20220754}. locus:2085964; AT3G25710 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EAJY CDKG1 Q9FGW5,A0A1P8BE28,A0A1P8BE51 CDKG1_ARATH,A0A1P8BE28_ARATH,A0A1P8BE51_ARATH Cyclin-dependent kinase G1 (EC 2.7.11.22),Protein kinase superfamily protein DISRUPTION PHENOTYPE: Aberrant callose deposition, defective pollen wall formation during microspore development, and severely reduced male fertility. {ECO:0000269|PubMed:23404887, ECO:0000269|PubMed:24469829}. FUNCTION: Cyclin-dependent kinase involved in pre-mRNA splicing. Required for the correct splicing of the sixth intron of CALS5 pre-mRNA. May stabilize the binding of U1 snRNP to this rare type of intron with a GC 5'SS. Involved in chromosome pairing and is required for the completion of synapsis in male meiocytes at high ambient temperatures. {ECO:0000269|PubMed:23404887, ECO:0000269|PubMed:24469829}. 2.7.11.22 69620,62435,47195 Cyclin-dependent kinase G1 (EC 2.7.11.22),Protein kinase superfamily protein nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; meiotic cell cycle [GO:0051321]; mRNA splicing, via spliceosome [GO:0000398]; pollen exine formation [GO:0010584]; protein phosphorylation [GO:0006468]; regulation of (1->3)-beta-D-glucan biosynthetic process [GO:0032953]; regulation of gene expression [GO:0010468]; regulation of mitotic cell cycle [GO:0007346],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in leaves and inflorescences. Lower levels of expression in roots and stems. {ECO:0000269|PubMed:23404887}. locus:2158554; AT5G63370 S_TKc NA NA NA NA NA NA NA ENOG411EAJZ RDL5,RDL4 Q9SUS9,Q9SUT0 RDL5_ARATH,RDL4_ARATH Probable cysteine protease RDL5 (EC 3.4.22.-) (Cysteine protease 2) (AtCP2) (Probable cysteine proteinase At4g11320) (RD21A-like protease 5),Probable cysteine protease RDL4 (EC 3.4.22.-) (Cysteine protease 1) (AtCP1) (Probable cysteine proteinase At4g11310) (RD21A-like protease 4) FUNCTION: Possesses protease activity in vitro. {ECO:0000269|PubMed:23460027}.,FUNCTION: Probable thiol protease. {ECO:0000250|UniProtKB:P43297}. 3.4.22.- 40711,39925 Probable cysteine protease RDL5 (EC 3.4.22.-) (Cysteine protease 2) (AtCP2) (Probable cysteine proteinase At4g11320) (RD21A-like protease 5),Probable cysteine protease RDL4 (EC 3.4.22.-) (Cysteine protease 1) (AtCP1) (Probable cysteine proteinase At4g11310) (RD21A-like protease 4) extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; peptidase activity [GO:0008233]; proteolysis involved in cellular protein catabolic process [GO:0051603],cell wall [GO:0005618]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in roots, inflorescences and siliques. {ECO:0000269|PubMed:23460027}.,TISSUE SPECIFICITY: Expressed in inflorescences. {ECO:0000269|PubMed:23460027}. locus:2128253;,locus:2128243; AT4G11320,AT4G11310 cysteine-type peptidase activity NA NA NA NA NA NA NA ENOG411EAJU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase At1g29670-like NA NA NA NA NA NA NA ENOG411EAJ8 T16O11.17,MJG14.7 Q9M015,Q9SR89,Q9FHW0 Y5161_ARATH,Q9SR89_ARATH,Q9FHW0_ARATH Uncharacterized protein At5g01610,At3g08890 (T16O11.17 protein) (Uncharacterized protein At3g08890),At5g37070 (Gb|AAF07835.1) (Uncharacterized protein At5g37070) 19069,19032,18954 Uncharacterized protein At5g01610,At3g08890 (T16O11.17 protein) (Uncharacterized protein At3g08890),At5g37070 (Gb|AAF07835.1) (Uncharacterized protein At5g37070) locus:2149770;,locus:2097668;,locus:2166178; AT5G01610,AT3G08890,AT5G37070 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411EAJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E0K3 Q0WVF7,Q8RXI0 Q0WVF7_ARATH,Q8RXI0_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative 26S proteosome regulatory subunit),AAA-type ATPase family protein (Uncharacterized protein At5g16930) R-ATH-6798695; 69567,70992 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative 26S proteosome regulatory subunit),AAA-type ATPase family protein (Uncharacterized protein At5g16930) cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; zinc ion binding [GO:0008270],mitochondrion [GO:0005739]; ATP binding [GO:0005524] locus:2097690;,locus:2148206; AT3G03060,AT5G16930 ATPase family AAA domain-containing protein 26S proteosome regulatory subunit-like (Os02g0697600 protein) (cDNA clone:J033088G12, full insert sequence),Os02g0697600 protein (Fragment) Q6Z8F7,A0A0P0VNJ2 Q6Z8F7_ORYSJ,A0A0P0VNJ2_ORYSJ Os02g0697600 Os02g0697600 OsJ_08029 OSNPB_020697600 P0459B01.7,Os02g0697600 OSNPB_020697600 ENOG411E0K0 CIA2,CIL Q9LU68,F4KAK3,C0SVJ8,Q9SZH3,Q94KJ2,F4KAK2 CIA2_ARATH,F4KAK3_ARATH,C0SVJ8_ARATH,Q9SZH3_ARATH,Q94KJ2_ARATH,F4KAK2_ARATH Protein CHLOROPLAST IMPORT APPARATUS 2,Chloroplast import apparatus 2,CCT motif family protein (Uncharacterized protein At4g25990) (Fragment),CCT motif family protein (Uncharacterized protein AT4g25990) (Uncharacterized protein F20B18.100),At4g25990 (CCT motif family protein) (CIL) DISRUPTION PHENOTYPE: Pale phenotype. Defective in the general chloroplast protein import pathway. {ECO:0000269|PubMed:11549763}. Defective in chloroplast protein import; chloroplasts have reduced import efficiency compared to wild type; import of both the stromal protein RBCS and the thylakoid lumenal protein plastocyanin is reduced; pale-green leaves. Pale green-H. Li-2001 FUNCTION: Responsible for specific up-regulation of the translocon genes TOC33 and TOC75 in leaves. Involved in the general chloroplast protein import pathway regulation, including protein import and protein translation efficiencies. {ECO:0000269|PubMed:11549763, ECO:0000269|PubMed:19386807}. 48410,41237,46352,42713,44578,47068 Protein CHLOROPLAST IMPORT APPARATUS 2,Chloroplast import apparatus 2,CCT motif family protein (Uncharacterized protein At4g25990) (Fragment),CCT motif family protein (Uncharacterized protein AT4g25990) (Uncharacterized protein F20B18.100),At4g25990 (CCT motif family protein) (CIL) chloroplast [GO:0009507]; nucleus [GO:0005634]; protein targeting to chloroplast [GO:0045036]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in leaves and young flower buds. {ECO:0000269|PubMed:11549763}. locus:2175564;,locus:2120850; AT5G57180,AT4G25990 Protein CHLOROPLAST IMPORT APPARATUS Os02g0148000 protein Q6Z438 Q6Z438_ORYSJ Os02g0148000 Os02g0148000 OSNPB_020148000 P0479D12.10 ENOG411E0KQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411E0KV MTK Q9C6D2 MTK_ARATH Methylthioribose kinase (AtMTK) (MTR kinase) (EC 2.7.1.100) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. Not able to grow with methylthioadenosine (MTA) as unique source of sulfur. {ECO:0000269|PubMed:15557090}. etiolated seedlings of both wild type and mtk mutants have very low emission of ethylene. The eto3 mutant on the other hand has much higher emission of ethylene. The mtk/eto3 double mutant has a intermediate level of ethylene emission. Since mtk is involved in methionine recycle the double mutant phenotype indicated that methionine recycle is required to sustain high rates of ethylene synthesis. Sensitive to sulfur starvation-G. Rzewski-2004 FUNCTION: Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate in the methionine cycle. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis. {ECO:0000269|PubMed:17144895, ECO:0000269|PubMed:17961230}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (hydrolase route): step 2/2. ARA:AT1G49820-MONOMER; 2.7.1.100; 2.7.1.100 48071 Methylthioribose kinase (AtMTK) (MTR kinase) (EC 2.7.1.100) cytosol [GO:0005829]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; S-methyl-5-thioribose kinase activity [GO:0046522]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; L-methionine salvage from methylthioadenosine [GO:0019509] locus:2007253; AT1G49820 methylthioribose kinase Methylthioribose kinase 1 (MTR kinase 1) (OsMTK1) (EC 2.7.1.100),Methylthioribose kinase 2 (MTR kinase 2) (OsMTK2) (EC 2.7.1.100),Os04g0669900 protein (Fragment) Q7XR61,Q7XR60,A0A0P0WG91 MTK1_ORYSJ,MTK2_ORYSJ,A0A0P0WG91_ORYSJ MTK1 Os04g0669800 LOC_Os04g57400 OsJ_16565 OSJNBa0043A12.24,MTK2 Os04g0669900 LOC_Os04g57410 OsJ_16566 OSJNBa0043A12.25,Os04g0669900 OSNPB_040669900 FUNCTION: Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate. {ECO:0000269|PubMed:15557090}.,FUNCTION: Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate. {ECO:0000250}. ENOG411E0KU PPD5 P82715,A0A1P8BCY0 PPD5_ARATH,A0A1P8BCY0_ARATH PsbP domain-containing protein 5, chloroplastic (OEC23-like protein 6) (PsbP-related thylakoid lumenal protein 4) (Thylakoid lumenal 35.8 kDa protein),PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) DISRUPTION PHENOTYPE: Smaller plants and frequent morphological defects, including increased lateral root branching, aerial rosettes and multiple rosettes. No effect on photosystem II and linear photosynthetic electron transfer. {ECO:0000269|PubMed:22174848}. FUNCTION: Involved in strigolactone biosynthesis. {ECO:0000269|PubMed:22174848}. MetaCyc:AT5G11450-MONOMER; 33365,35328 PsbP domain-containing protein 5, chloroplastic (OEC23-like protein 6) (PsbP-related thylakoid lumenal protein 4) (Thylakoid lumenal 35.8 kDa protein),PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979],extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2144236; AT5G11450 psbP domain-containing protein 5 Os01g0617900 protein (cDNA clone:J023086L13, full insert sequence),Os01g0617900 protein (cDNA clone:006-202-F07, full insert sequence) Q5ZDI6,Q5ZDI7 Q5ZDI6_ORYSJ,Q5ZDI7_ORYSJ P0686E09.32-2 Os01g0617900 OSNPB_010617900,P0686E09.32-1 Os01g0617900 OsJ_02623 OSNPB_010617900 ENOG411E0KZ Q66GR7,A0A1P8ATS6,B3H623 Q66GR7_ARATH,A0A1P8ATS6_ARATH,B3H623_ARATH 5'-3' exonuclease family protein (At1g34380),5'-3' exonuclease family protein 39501,37371,30135 5'-3' exonuclease family protein (At1g34380),5'-3' exonuclease family protein cytoplasm [GO:0005737]; DNA binding [GO:0003677]; exonuclease activity [GO:0004527]; DNA-dependent DNA replication [GO:0006261],DNA binding [GO:0003677]; exonuclease activity [GO:0004527] locus:2036293; AT1G34380 5'-3' exonuclease C-terminal SAM fold Os01g0874800 protein (Putative DNA polymerase I 3'-5' exo domain) (cDNA clone:J013046K16, full insert sequence) (cDNA clone:J033132P11, full insert sequence),Os01g0874800 protein (Putative DNA polymerase I 3'-5' exo domain) (cDNA clone:001-044-D07, full insert sequence),Os01g0874800 protein (Putative DNA polymerase I) (Putative DNA polymerase I 3'-5' exo domain) (cDNA clone:J013045N02, full insert sequence) Q5N8W9,Q5N8X0,Q8RYY9 Q5N8W9_ORYSJ,Q5N8X0_ORYSJ,Q8RYY9_ORYSJ P0698A10.12-1 Os01g0874800 OSNPB_010874800,P0698A10.12-2 Os01g0874800 OSNPB_010874800,P0648C09.11 Os01g0874800 P0698A10.12-3 OsJ_04262 OSNPB_010874800 ENOG411E0KX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q6AUW6,Q6AUW7,B9FK94 Q6AUW6_ORYSJ,Q6AUW7_ORYSJ,B9FK94_ORYSJ Os05g0499800 OJ1057_B02.11 OsJ_19085 OSNPB_050499800,Os05g0499600 OJ1057_B02.9 OSNPB_050499600,Os05g0500000 OsJ_19086 OSNPB_050500000 ENOG411E0KF Q9LH89 Y3885_ARATH Uncharacterized protein At3g28850 48179 Uncharacterized protein At3g28850 plasma membrane [GO:0005886]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2098408; AT3G28850 protein disulfide oxidoreductase activity OSJNBa0063C18.3 protein (OSJNBb0079B02.8 protein) (Os04g0641300 protein) (cDNA clone:J023114E02, full insert sequence) Q7X6B6 Q7X6B6_ORYSJ Os04g0641300 OSJNBa0063C18.3 OSJNBb0079B02.8 OSNPB_040641300 ENOG411E0KE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF827 Os06g0314000 protein (Fragment) A0A0P0WVS6 A0A0P0WVS6_ORYSJ Os06g0314000 OSNPB_060314000 ENOG411E0KJ Q9LJ71 Q9LJ71_ARATH En/Spm-like transposon protein-like (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g18950) (Uncharacterized protein At3g18950/K13E13_5) 52127 En/Spm-like transposon protein-like (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g18950) (Uncharacterized protein At3g18950/K13E13_5) locus:2085929; AT3G18950 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E0KK Q9LYA6,F4K5I0 Q9LYA6_ARATH,F4K5I0_ARATH Ankyrin (Ankyrin-like protein),Ankyrin 63895,81394 Ankyrin (Ankyrin-like protein),Ankyrin locus:2145613; AT5G14230 Ankyrin Repeat Ankyrin 3, epithelial isoform a-like (Os02g0457500 protein),Os04g0490300 protein (Fragment) Q6K393,Q0JC61 Q6K393_ORYSJ,Q0JC61_ORYSJ Os02g0457500 OSJNBa0063K04.42 OSJNBa0078K05.3 OSNPB_020457500,Os04g0490300 Os04g0490300 OSNPB_040490300 ENOG411E0KH TTM3 Q9SIY3 TTM3_ARATH Triphosphate tunel metalloenzyme 3 (Adenosinetriphosphatase) (ATPase) (EC 3.6.1.3) (Triphosphatase) (PPPase) (EC 3.6.1.25) DISRUPTION PHENOTYPE: Delayed root growth and reduced length and number of lateral roots. {ECO:0000269|PubMed:24004165}. FUNCTION: Involved in the hydrolysis of the beta-gamma-phosphoanhydride linkage of triphosphate-containing substrates (inorganic or nucleoside-linked). Catalyzes the hydrolysis of inorganic triphosphate (PPPi), however it does not display significant activity towards long-chain polyphosphates. The existence of PPPi in living cells is still unclear, and PPPase activity might be the ancestral function of CYTH domain. It also has gamma-phosphatase activity on NTP substrates, but no adenylate cyclase or RNA triphosphatase activity. {ECO:0000269|PubMed:24004165}. 3.6.1.3; 3.6.1.25 24163 Triphosphate tunel metalloenzyme 3 (Adenosinetriphosphatase) (ATPase) (EC 3.6.1.3) (Triphosphatase) (PPPase) (EC 3.6.1.25) nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; triphosphatase activity [GO:0050355]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed only in the proximal meristematic zone of the root. {ECO:0000269|PubMed:24004165}. locus:2045879; AT2G11890 Adenylate cyclase Os08g0299200 protein (Putative adenylate cyclase) (cDNA, clone: J075096F13, full insert sequence),Os01g0854651 protein (Fragment) Q6YVN9,A0A0P0VAG3 Q6YVN9_ORYSJ,A0A0P0VAG3_ORYSJ Os08g0299200 OSJNBa0063H21.119 OSJNBa0070J19.24 OSNPB_080299200,Os01g0854651 OSNPB_010854651 ENOG411EI5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1110) Os01g0157300 protein Q5ZCD0 Q5ZCD0_ORYSJ P0011G08.37 Os01g0157300 OSNPB_010157300 ENOG411EI5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA f-box family NA NA NA NA NA NA NA ENOG411EI5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411EI5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 20 catalytic domain NA NA NA NA NA NA NA ENOG411EI59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI51 F4KFD1 F4KFD1_ARATH Uncharacterized protein 12648 Uncharacterized protein locus:5019474853; AT5G09876 NA NA NA NA NA NA NA NA ENOG411DV9F PEX11B Q9STY0 PX11B_ARATH Peroxisomal membrane protein 11B (Peroxin-11B) (AtPEX11b) FUNCTION: Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}. 25598 Peroxisomal membrane protein 11B (Peroxin-11B) (AtPEX11b) integral component of peroxisomal membrane [GO:0005779]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; identical protein binding [GO:0042802]; peroxisome fission [GO:0016559]; peroxisome organization [GO:0007031]; regulation of peroxisome size [GO:0044375] TISSUE SPECIFICITY: Expressed in roots, leaves and developing siliques. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}. locus:2099590; AT3G47430 Peroxisomal membrane protein Peroxisomal membrane protein 11-4 (OsPEX11-4) (Peroxin-11-4) Q7XU74 PX114_ORYSJ PEX11-4 Os04g0534600 LOC_Os04g45210 OsJ_014940 OSJNBb0020O11.14 FUNCTION: Involved in peroxisomal proliferation. {ECO:0000250}. ENOG411E7QJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0824500 protein (cDNA clone:001-020-F07, full insert sequence) Q852C1 Q852C1_ORYSJ OSJNBb0081B07.2 Os03g0824500 OSNPB_030824500 ENOG411E7QI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0487100 protein,Os05g0487300 protein (cDNA clone:001-109-A02, full insert sequence) B9FKV0,Q75KZ0 B9FKV0_ORYSJ,Q75KZ0_ORYSJ Os05g0487100 OsJ_18998 OSNPB_050487100,Os05g0487300 OJ1004_E02.13 OJ1119_H02.4 OSNPB_050487300 ENOG411E7QF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region containing protein Mini zinc finger protein 1 (OsMIF1),Mini zinc finger protein 2 (OsMIF2) Q2RB28,B9GBM3 MIF1_ORYSJ,MIF2_ORYSJ MIF1 Os11g0128300 LOC_Os11g03420 OsJ_32792,MIF2 Os12g0124500 LOC_Os12g03110 OsJ_35065 FUNCTION: Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. ENOG411E7QD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0597800 protein,Os11g0233900 protein,Os04g0200700 protein,Os01g0510901 protein (Fragment),Os02g0303350 protein,Os06g0364066 protein,Os12g0299050 protein,Os08g0304600 protein,Os04g0330400 protein (Fragment),Os11g0299775 protein,Os02g0450800 protein,Os12g0296200 protein B9FJ21,A0A0P0Y0T0,A0A0N7KIM9,A0A0P0V360,A0A0N7KF55,A0A0P0WWQ0,A0A0P0Y9F3,A0A0N7KPM3,A0A0P0W8L7,A0A0P0Y191,A0A0P0VIM6,A0A0P0Y989 B9FJ21_ORYSJ,A0A0P0Y0T0_ORYSJ,A0A0N7KIM9_ORYSJ,A0A0P0V360_ORYSJ,A0A0N7KF55_ORYSJ,A0A0P0WWQ0_ORYSJ,A0A0P0Y9F3_ORYSJ,A0A0N7KPM3_ORYSJ,A0A0P0W8L7_ORYSJ,A0A0P0Y191_ORYSJ,A0A0P0VIM6_ORYSJ,A0A0P0Y989_ORYSJ Os05g0597800 OsJ_19792 OSNPB_050597800,Os11g0233900 OSNPB_110233900,Os04g0200700 OSNPB_040200700,Os01g0510901 OSNPB_010510901,Os02g0303350 OSNPB_020303350,Os06g0364066 OSNPB_060364066,Os12g0299050 OSNPB_120299050,Os08g0304600 OSNPB_080304600,Os04g0330400 OSNPB_040330400,Os11g0299775 OSNPB_110299775,Os02g0450800 OSNPB_020450800,Os12g0296200 OSNPB_120296200 ENOG411E7QA O82499 IF1C_ARATH Translation initiation factor IF-1, chloroplastic FUNCTION: One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. {ECO:0000250|UniProtKB:P69222}. 15733 Translation initiation factor IF-1, chloroplastic chloroplast [GO:0009507]; cytosol [GO:0005829]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743] locus:2831681; AT4G11175 translation initiation factor NA NA NA NA NA NA NA ENOG411E7Q9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MORN NA NA NA NA NA NA NA ENOG411E7Q5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0636800 protein Q67WG0 Q67WG0_ORYSJ Os06g0636800 Os06g0636800 OsJ_22088 OSNPB_060636800 P0523F01.3 ENOG411EK1A Q9MAT3,A0A1P8AW60 Q9MAT3_ARATH,A0A1P8AW60_ARATH F13M7.16 protein (Ubiquitin-associated (UBA)/TS-N domain-containing protein) (Uncharacterized protein At1g04850) (Uncharacterized protein F13M7.16),Ubiquitin-associated (UBA)/TS-N domain-containing protein 46603,37004 F13M7.16 protein (Ubiquitin-associated (UBA)/TS-N domain-containing protein) (Uncharacterized protein At1g04850) (Uncharacterized protein F13M7.16),Ubiquitin-associated (UBA)/TS-N domain-containing protein cytosol [GO:0005829]; nucleic acid binding [GO:0003676] locus:2010637; AT1G04850 PUB domain NA NA NA NA NA NA NA ENOG411DT79 HBP5 Q8VZ90,F4K452 Q8VZ90_ARATH,F4K452_ARATH SOUL heme-binding family protein (Uncharacterized protein At5g20140),SOUL heme-binding family protein 43160,44880 SOUL heme-binding family protein (Uncharacterized protein At5g20140),SOUL heme-binding family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; heme binding [GO:0020037]; response to oxidative stress [GO:0006979] locus:2149239; AT5G20140 soul heme-binding Os06g0597900 protein (SOUL heme-binding protein-like) Q69VD1 Q69VD1_ORYSJ Os06g0597900 Os06g0597900 OsJ_21872 OSNPB_060597900 P0417D05.38 P0642B07.6 ENOG411DT78 MIEL1 Q8VZK0 MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1 (EC 2.3.2.27) (MYB30-interacting E3 ligase 1) (Pirh2-like protein 1) (AtPILP1) (RING-type E3 ubiquitin transferase MIEL1) FUNCTION: E3 ubiquitin-protein ligase that acts as a regulator of cell death and defense. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Attenuates the activation of defense and related cell death responses in the absence of pathogens by mediating ubiquitination and subsequent proteasomal degradation of MYB30. {ECO:0000269|PubMed:23403577}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. R-ATH-110320; 2.3.2.27 30983 E3 ubiquitin-protein ligase MIEL1 (EC 2.3.2.27) (MYB30-interacting E3 ligase 1) (Pirh2-like protein 1) (AtPILP1) (RING-type E3 ubiquitin transferase MIEL1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor binding [GO:0008134]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; defense response [GO:0006952]; negative regulation of defense response to bacterium [GO:1900425]; positive regulation of transcription factor catabolic process [GO:1901485]; protein ubiquitination [GO:0016567] locus:2180074; AT5G18650 RING finger and CHY zinc finger domain-containing protein CHY zinc finger family protein, expressed (Os12g0538500 protein) (cDNA clone:001-025-H03, full insert sequence) Q2QP88 Q2QP88_ORYSJ LOC_Os12g35320 Os12g0538500 OsJ_36374 OSNPB_120538500 ENOG411DT71 P49047,Q39119 VPEA_ARATH,VPEG_ARATH Vacuolar-processing enzyme alpha-isozyme (EC 3.4.22.34) (Alpha-VPE) (Asparaginyl endopeptidase alpha-VPE),Vacuolar-processing enzyme gamma-isozyme (EC 3.4.22.34) (Asparaginyl endopeptidase gamma-VPE) (Gamma-VPE) DISRUPTION PHENOTYPE: No macroscopic phenotype, probably due to functional redundancy. In plants lacking all vacuolar-processing enzyme isozymes (e.g. alpha, beta, gamma and delta) shift of storage protein accumulation from normally processed polypeptides to a finite number of prominent alternatively processed polypeptides cleaved at sites other than the conserved Asn residues targeted by VPE. {ECO:0000269|PubMed:14688293}. FUNCTION: Asparagine-specific endopeptidase involved in the processing of vacuolar seed protein precursors into the mature forms (PubMed:7579169). Probably involved in post-translational proteolysis of seed storage proteins in the protein storage vacuole of developing seeds (PubMed:14688293). {ECO:0000269|PubMed:14688293, ECO:0000269|PubMed:7579169}.,FUNCTION: Asparagine-specific endopeptidase involved in the processing of vacuolar seed protein precursors into the mature forms (PubMed:10417725). Probably involved in post-translational proteolysis of seed storage proteins in the protein storage vacuole of developing seeds (PubMed:14688293). {ECO:0000269|PubMed:10417725, ECO:0000269|PubMed:14688293}. 3.4.22.34 52670,54336 Vacuolar-processing enzyme alpha-isozyme (EC 3.4.22.34) (Alpha-VPE) (Asparaginyl endopeptidase alpha-VPE),Vacuolar-processing enzyme gamma-isozyme (EC 3.4.22.34) (Asparaginyl endopeptidase gamma-VPE) (Gamma-VPE) protein storage vacuole [GO:0000326]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603]; vacuolar protein processing [GO:0006624],lytic vacuole [GO:0000323]; protein storage vacuole [GO:0000326]; cysteine-type endopeptidase activity [GO:0004197]; endopeptidase activity [GO:0004175]; leaf senescence [GO:0010150]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611]; vacuolar protein processing [GO:0006624] TISSUE SPECIFICITY: Specific to vegetative organs, especially in senescent tissues. Expressed in developing seeds, rosette leaves, cauline leaves and stems. Not expressed in the siliques. Also present at the branching points of the roots and in vascular tissues. {ECO:0000269|PubMed:10417725, ECO:0000269|PubMed:14688293, ECO:0000269|PubMed:7579169}.,TISSUE SPECIFICITY: Specific to vegetative organs, especially in senescent tissues. Also expressed in seeds and root tips. {ECO:0000269|PubMed:10417725, ECO:0000269|PubMed:14688293}. locus:2043510;,locus:2123782; AT2G25940,AT4G32940 processing enzyme Os01g0559600 protein (Putative C13 endopeptidase NP1) (cDNA clone:J013108L21, full insert sequence),Os05g0593900 protein (Putative vacuolar processing enzyme (VPE)) (cDNA clone:001-017-C11, full insert sequence),Os06g0105100 protein (Putative asparagine-specific endopeptidase),Os01g0559600 protein (Fragment) Q7F1B4,Q6L4R2,Q9LWZ3,A0A0N7KD60 Q7F1B4_ORYSJ,Q6L4R2_ORYSJ,Q9LWZ3_ORYSJ,A0A0N7KD60_ORYSJ Os01g0559600 B1064G04.34 OSNPB_010559600,Os05g0593900 Os05g0593900 OsJ_19767 OSJNBa0030I14.1 OSNPB_050593900 P0663C08.16,Os06g0105100 OsJ_19825 OSNPB_060105100 P0644B06.20,Os01g0559600 OSNPB_010559600 ENOG411DT70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family Os06g0269200 protein,Os03g0707200 protein Q0DD04,A0A0N7KHW9 Q0DD04_ORYSJ,A0A0N7KHW9_ORYSJ Os06g0269200 Os06g0269200 OSNPB_060269200,Os03g0707200 OSNPB_030707200 ENOG411DT73 OVA4 Q8RXE9,A0A1P8AY21,F4ISP6,F4ISP4 SYWM_ARATH,A0A1P8AY21_ARATH,F4ISP6_ARATH,F4ISP4_ARATH Tryptophan--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.2) (Protein OVULE ABORTION 4) (Tryptophanyl-tRNA synthetase) (TrpRS),Nucleotidylyl transferase superfamily protein DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterozygous plants 26% of ovules are aborted compared to 7% of ovules in wild type siblings. Ovule abortion; Female gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 ARA:AT2G25840-MONOMER; 6.1.1.2 45300,42965,43913,45853 Tryptophan--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.2) (Protein OVULE ABORTION 4) (Tryptophanyl-tRNA synthetase) (TrpRS),Nucleotidylyl transferase superfamily protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; tryptophan-tRNA ligase activity [GO:0004830]; tryptophanyl-tRNA aminoacylation [GO:0006436],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; transferase activity [GO:0016740]; tryptophan-tRNA ligase activity [GO:0004830]; tryptophanyl-tRNA aminoacylation [GO:0006436],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; transferase activity [GO:0016740]; tryptophan-tRNA ligase activity [GO:0004830]; plant ovule development [GO:0048481]; tryptophanyl-tRNA aminoacylation [GO:0006436] locus:2043570; AT2G25840 tryptophanyl-trna Os01g0743400 protein (Putative tryptophanyl-tRNA synthetase) Q5JKV2,Q5JKV1 Q5JKV2_ORYSJ,Q5JKV1_ORYSJ P0439E07.32-2 Os01g0743400 OsJ_03415 OSNPB_010743400,P0439E07.32-1 Os01g0743400 OSNPB_010743400 ENOG411DT72 rad1-like Q709F4,Q8L7G8 Q709F4_ARATH,Q8L7G8_ARATH PCNA domain-containing protein (Rad1-like protein),At4g17760 (PCNA domain-containing protein) (Rad1-like protein) (Uncharacterized protein At4g17760) 20642,33320 PCNA domain-containing protein (Rad1-like protein),At4g17760 (PCNA domain-containing protein) (Rad1-like protein) (Uncharacterized protein At4g17760) nucleus [GO:0005634],checkpoint clamp complex [GO:0030896]; damaged DNA binding [GO:0003684]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281] locus:2129420; AT4G17760 cell cycle checkpoint protein Os06g0132600 protein (Rad1-like protein) (cDNA clone:J033076A22, full insert sequence),Os06g0132600 protein (Rad1-like protein) (cDNA clone:006-210-H12, full insert sequence) Q9FPC6,Q5VRP2 Q9FPC6_ORYSJ,Q5VRP2_ORYSJ P0679C08.22-2 134P10.6 Os06g0132600 OSNPB_060132600,P0679C08.22-1 Os06g0132600 OSNPB_060132600 ENOG411DT75 NADK2 Q9C5W3,F4HY34 NADK2_ARATH,F4HY34_ARATH NAD kinase 2, chloroplastic (AtNADK-2) (EC 2.7.1.23),NAD kinase 2 FUNCTION: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage. {ECO:0000269|PubMed:16244906}. R-ATH-196807; 2.7.1.23; 2.7.1.23 109188,110903 NAD kinase 2, chloroplastic (AtNADK-2) (EC 2.7.1.23),NAD kinase 2 chloroplast [GO:0009507]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; NAD+ kinase activity [GO:0003951]; NAD metabolic process [GO:0019674]; NADP biosynthetic process [GO:0006741],chloroplast [GO:0009507]; calmodulin binding [GO:0005516]; NAD+ kinase activity [GO:0003951]; NAD metabolic process [GO:0019674]; NADP biosynthetic process [GO:0006741] DEVELOPMENTAL STAGE: Expressed during development from young seedlings to flowering plants. {ECO:0000269|PubMed:15247403}. TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15711971}. locus:2036952; AT1G21640 nad kinase Probable NAD kinase 2, chloroplastic (EC 2.7.1.23),Os11g0191400 protein (Fragment),Os11g0189900 protein Q53NI2,A0A0N7KSJ8,A0A0P0XZP4,A0A0P0XZU9 NADK2_ORYSJ,A0A0N7KSJ8_ORYSJ,A0A0P0XZP4_ORYSJ,A0A0P0XZU9_ORYSJ Os11g0191400 LOC_Os11g08670,Os11g0191400 OSNPB_110191400,Os11g0189900 OSNPB_110189900 FUNCTION: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage. {ECO:0000250}. ENOG411DT74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease Os06g0228800 protein (Putative amino acid transporter),Amino acid permease I, putative, expressed (Os12g0194900 protein) Q67WJ4,Q2QWH7 Q67WJ4_ORYSJ,Q2QWH7_ORYSJ Os06g0228800 OSNPB_060228800 P0425F05.38 P0525F01.8,Os12g0194900 LOC_Os12g09300 Os12g0194900 OSNPB_120194900 ENOG411DT77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Somatic embryogenesis receptor kinase BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative, expressed (Os03g0440900 protein) (Putative leucine-rich repeat protein) (cDNA clone:001-038-C03, full insert sequence) (cDNA clone:J023031G03, full insert sequence) Q851U1 Q851U1_ORYSJ OSJNBa0051C19.5 LOC_Os03g32580 Os03g0440900 OsJ_11406 OSNPB_030440900 ENOG411DT76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain Os01g0167800 protein A0A0N7KCE4 A0A0N7KCE4_ORYSJ Os01g0167800 OSNPB_010167800 ENOG411DT7I HVA22I Q8LE10,A8MRL9 HA22I_ARATH,A8MRL9_ARATH HVA22-like protein i (AtHVA22i),HVA22-like protein 33364,32188 HVA22-like protein i (AtHVA22i),HVA22-like protein membrane [GO:0016020] locus:2152686; AT5G42560 HVA22-like protein HVA22-like protein Q10S69 Q10S69_ORYSJ Os03g0132300 LOC_Os03g04030 Os03g0132300 OsJ_09302 OSNPB_030132300 ENOG411DT7H GNTI,CGL1 Q9XGM8,F4JTL6 MGAT1_ARATH,F4JTL6_ARATH Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) (N-acetylglucosaminyltransferase I) (GlcNAcT-I) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I) (Protein COMPLEX GLYCAN LESS 1),Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase DISRUPTION PHENOTYPE: Plants have an increased salt-sensitivity resulting in growth inhibition, aberrant root-tip morphology and callose accumulation. {ECO:0000269|PubMed:18768906, ECO:0000269|PubMed:8278542}. strongly repressed root growth when exposed to salt or manitol callose accumulation at root tips exposed to salt. Sensitive to mannitol and potassium chloride-H. Koiwa-2008 FUNCTION: Initiates complex N-linked carbohydrate formation. Essential for the conversion of high-mannose to hybrid and complex N-glycans. Required for normal root growth and morphology. {ECO:0000269|PubMed:10441510, ECO:0000269|PubMed:18408158, ECO:0000269|PubMed:18768906, ECO:0000269|PubMed:8127889, ECO:0000269|PubMed:8278542}. MISCELLANEOUS: Creation of a second N-glycosylation site in mutant cgl1 C5/cgl1-1 interferes with protein folding and sequesters the protein for degradation in the endoplasmic reticulum. PATHWAY: Protein modification; protein glycosylation. ARA:AT4G38240-MONOMER; R-ATH-964739; 2.4.1.101 51634,50116 Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) (N-acetylglucosaminyltransferase I) (GlcNAcT-I) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I) (Protein COMPLEX GLYCAN LESS 1),Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity [GO:0003827]; metal ion binding [GO:0046872]; protein N-acetylglucosaminyltransferase activity [GO:0016262]; transferase activity, transferring glycosyl groups [GO:0016757]; hyperosmotic response [GO:0006972]; N-glycan processing [GO:0006491]; protein glycosylation [GO:0006486],acetylglucosaminyltransferase activity [GO:0008375]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:10889259}. locus:2120993; AT4G38240 Alpha-13-mannosyl-glycoprotein N-acetylglucosaminyltransferase I-like protein (Os02g0832800 protein) (cDNA clone:J033046P17, full insert sequence),Os02g0832800 protein (Fragment) Q6K959,A0A0P0VRN7 Q6K959_ORYSJ,A0A0P0VRN7_ORYSJ Os02g0832800 OJ1149_C12.27 OJ1282_E10.3 OsJ_09008 OSNPB_020832800,Os02g0832800 OSNPB_020832800 ENOG411DT7K Q9FKM3,Q8RY66 AATPK_ARATH,AATPD_ARATH AAA-ATPase At5g57480 (EC 3.6.1.3),AAA-ATPase At4g25835 (EC 3.6.1.3) 3.6.1.3 59102,57615 AAA-ATPase At5g57480 (EC 3.6.1.3),AAA-ATPase At4g25835 (EC 3.6.1.3) ATP binding [GO:0005524]; ATPase activity [GO:0016887] locus:2174502;,locus:505006520; AT5G57480,AT4G25835 AAA-type ATPase family protein Os09g0432300 protein (Fragment) Q0J1L1 Q0J1L1_ORYSJ Os09g0432300 OSNPB_090432300 ENOG411DT7J TAF6B,TAF6 F4HVA6,Q9MAU3,A0A1P8AT29 TAF6B_ARATH,TAF6_ARATH,A0A1P8AT29_ARATH Transcription initiation factor TFIID subunit 6b (TBP-associated factor 6b) (AtTAF6b),Transcription initiation factor TFIID subunit 6 (Protein EMBRYO DEFECTIVE 2781) (TATA box associated factor II 59) (TBP-associated factor 6) (AtTAF6) (Transcription initiation factor TFIID subunit D5),TBP-ASSOCIATED FACTOR 6B (Fragment) DISRUPTION PHENOTYPE: Lethal when homozygote. Reduced pollen tube growth when heterozygote. {ECO:0000269|PubMed:16039640}. Embryonic lethal in homozygotes.,Pollen tube development from mutant homozygote pollen is affected growth rate is reduced. Male gametophyte defective; Embryo defective- M. Kater-2005 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Not redundant with TAF6. {ECO:0000269|PubMed:16039640}.,FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Required for proper pollen function. May stabilize the interaction of TFIID with selected promoters. Not redundant with TAF6B. {ECO:0000269|PubMed:16039640}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 59275,61365,60748 Transcription initiation factor TFIID subunit 6b (TBP-associated factor 6b) (AtTAF6b),Transcription initiation factor TFIID subunit 6 (Protein EMBRYO DEFECTIVE 2781) (TATA box associated factor II 59) (TBP-associated factor 6) (AtTAF6) (Transcription initiation factor TFIID subunit D5),TBP-ASSOCIATED FACTOR 6B (Fragment) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; DNA-templated transcription, initiation [GO:0006352]; regulation of sequence-specific DNA binding transcription factor activity [GO:0051090],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; DNA-templated transcription, initiation [GO:0006352]; pollen tube growth [GO:0009860]; regulation of sequence-specific DNA binding transcription factor activity [GO:0051090] DEVELOPMENTAL STAGE: Not expressed in germinating pollen. {ECO:0000269|PubMed:16039640}.,DEVELOPMENTAL STAGE: Expressed in germinating pollen. {ECO:0000269|PubMed:16039640}. TISSUE SPECIFICITY: Expressed in roots, leaves, inflorescences and siliques. {ECO:0000269|PubMed:15527982, ECO:0000269|PubMed:16039640}. locus:2020143;,locus:2010667; AT1G54360,AT1G04950 transcription initiation factor TFIID subunit Os01g0510800 protein (Putative TAF6) (cDNA clone:J023036C23, full insert sequence) Q8LRG9 Q8LRG9_ORYSJ Os01g0510800 Os01g0510800 OsJ_01969 OSNPB_010510800 P0520B06.21 ENOG411DT7M ARF2 Q94JM3,F4K536 ARFB_ARATH,F4K536_ARATH Auxin response factor 2 (ARF1-binding protein) (ARF1-BP) (Protein MEGAINTEGUMENTA),Auxin response factor DISRUPTION PHENOTYPE: Large, dark green rosette leaves, delayed flowering, thick and long inflorescence, abnormal flower morphology and sterility in early formed flowers, but fertility in late-formed flowers. Delayed senescence and abscission. Increased seed size and weight, and extra cell division and expansion in many organs. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16339187}. Elongated hypocotyl dark green leaves long and thick inflorescence stems delayed senescence elongated gynoecium and sepals reduced fertility defective anthesis delayed abscission larger seeds.,Delayed flowering delayed senescence delayed fruit dehiscence reduced fertility short stamens elongated carpels.,Increased seed size due to proliferation of cell division in inner and outer integuments. Pleiotropic effects include thick twisted stems late flowering and reduced fertility. Large cotyledons; Short hypocotyl; Large, dark green rosette leaves; Reduced fertility; Large seeds; Late flowering; Delayed senescence-A. Theologis-2005 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 95701,95385 Auxin response factor 2 (ARF1-binding protein) (ARF1-BP) (Protein MEGAINTEGUMENTA),Auxin response factor nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; floral organ abscission [GO:0010227]; fruit dehiscence [GO:0010047]; leaf senescence [GO:0010150]; negative regulation of cell proliferation [GO:0008285]; negative regulation of transcription, DNA-templated [GO:0045892]; plant ovule development [GO:0048481]; positive regulation of flower development [GO:0009911]; positive regulation of potassium ion import [GO:1903288]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. locus:2174013; AT5G62000 auxin response factor Auxin response factor 23 (OsARF1),Auxin response factor 4 (OsARF2),Auxin response factor 24,Auxin-responsive protein (Fragment),Auxin response factor Q2R3F5,Q5JK20,Q2QQX6,A0A0P0YA58,A0A0P0Y2Y4 ARFW_ORYSJ,ARFD_ORYSJ,ARFX_ORYSJ,A0A0P0YA58_ORYSJ,A0A0P0Y2Y4_ORYSJ ARF23 ARF1 Os11g0523800 LOC_Os11g32110,ARF4 ARF2 Os01g0927600 LOC_Os01g70270 OSJNBa0093F16.35,ARF24 Os12g0479400 LOC_Os12g29520,Os12g0479400 OSNPB_120479400,Os11g0523800 OSNPB_110523800 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. ENOG411DT7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SUMO-conjugating enzyme NA NA NA NA NA NA NA ENOG411DT7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-n-debenzoyl-2-deoxytaxol n-benzoyltransferase 10-deacetylbaccatin III-10-O-acetyl transferase-like (Os01g0615200 protein),Acetyl transferase-like protein (Os09g0304900 protein),Os01g0615300 protein (Taxadienol acetyl transferase-like),Os05g0571501 protein Q9FTH0,Q69K83,Q9FTG9,A0A0N7KLA0 Q9FTH0_ORYSJ,Q69K83_ORYSJ,Q9FTG9_ORYSJ,A0A0N7KLA0_ORYSJ Os01g0615200 OSNPB_010615200 P0410E01.46,Os09g0304900 OsJ_28779 OSJNBb0079K11.31 OSNPB_090304900,Os01g0615300 OsJ_02606 OSNPB_010615300 P0410E01.47,Os05g0571501 OSNPB_050571501 ENOG411DT7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RhoGAP Os01g0967200 protein (Putative rac GTPase activating protein) (cDNA clone:002-139-E04, full insert sequence) Q8LHB9 Q8LHB9_ORYSJ Os01g0967200 Os01g0967200 OSNPB_010967200 P0458E05.37 ENOG411DT7B CYP40 Q9C566 CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40 (PPIase CYP40) (EC 5.2.1.8) (Cyclophilin of 40 kDa) (Cyclophilin-40) (Protein SQUINT) (Rotamase CYP40) Few leaves-S. Poethig-2001 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in promoting the expression of the juvenile phase of vegetative development, and, to a lower extent, in regulating the positioning of floral buds, floral morphogenesis and the expression of HSPs. {ECO:0000269|PubMed:11264535}. 5.2.1.8 40607 Peptidyl-prolyl cis-trans isomerase CYP40 (PPIase CYP40) (EC 5.2.1.8) (Cyclophilin of 40 kDa) (Cyclophilin-40) (Protein SQUINT) (Rotamase CYP40) cytoplasm [GO:0005737]; cytosol [GO:0005829]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; floral meristem determinacy [GO:0010582]; protein folding [GO:0006457]; vegetative phase change [GO:0010050] TISSUE SPECIFICITY: Expressed at low levels in seedlings, leaves and flowers. {ECO:0000269|PubMed:11264535}. locus:2044596; AT2G15790 Peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411DT7E Q9T0K4,A0A1P8B8V1 Q9T0K4_ARATH,A0A1P8B8V1_ARATH At4g13330 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein AT4g13330),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 48002,37241 At4g13330 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein AT4g13330),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2142095; AT4G13330 NA OSJNBa0004N05.3 protein (Os04g0510700 protein) Q7XQ04 Q7XQ04_ORYSJ Os04g0510700 OsJ_15431 OSJNBa0004N05.3 OSNPB_040510700 ENOG411DT7D RBL12 Q9FZ81 RBL12_ARATH RHOMBOID-like protein 12, mitochondrial (AtRBL12) (EC 3.4.21.-) (Presenilins-associated rhomboid-like protein) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. Unable to cleave either of the yeast Pcp1 substrates in yeast cells. {ECO:0000269|PubMed:18543065}. MISCELLANEOUS: The functional differences between RBL12 and the yeast Pcp1 appear to be at least caused by differences in their transmembrane domains. {ECO:0000305|PubMed:18543065}. 3.4.21.- 37441 RHOMBOID-like protein 12, mitochondrial (AtRBL12) (EC 3.4.21.-) (Presenilins-associated rhomboid-like protein) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; serine-type endopeptidase activity [GO:0004252] locus:2027448; AT1G18600 Rhomboid family Os01g0763100 protein A0A0N7KDT0 A0A0N7KDT0_ORYSJ Os01g0763100 OSNPB_010763100 ENOG411DT7G Q9FYA3 Q9FYA3_ARATH At5g13070 (MSF1-like family protein) (Uncharacterized protein T19L5_30) 21176 At5g13070 (MSF1-like family protein) (Uncharacterized protein T19L5_30) mitochondrial intermembrane space [GO:0005758]; phosphatidic acid transporter activity [GO:1990050] locus:2179852; AT5G13070 protein slowmo homolog Os02g0717900 protein (cDNA clone:J023031J12, full insert sequence) Q6ZGV3 Q6ZGV3_ORYSJ Os02g0717900 Os02g0717900 OJ2056_H01.23 OSNPB_020717900 ENOG411DT7F SEC3B,SEC3A Q9SX86,Q9SX85,F4HTA1 SEC3B_ARATH,SEC3A_ARATH,F4HTA1_ARATH Exocyst complex component SEC3B (AtSec3b),Exocyst complex component SEC3A (AtSec3a),Exocyst complex component sec3A DISRUPTION PHENOTYPE: Embryonic lethality. {ECO:0000269|PubMed:23495664}. FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall.,FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. {ECO:0000269|PubMed:23495664}. R-ATH-5620916; 99922,100065,100164 Exocyst complex component SEC3B (AtSec3b),Exocyst complex component SEC3A (AtSec3a),Exocyst complex component sec3A exocyst [GO:0000145]; plasma membrane [GO:0005886]; GTP-Rho binding [GO:0017049]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; acceptance of pollen [GO:0060321]; exocyst localization [GO:0051601]; exocytosis [GO:0006887]; Golgi to plasma membrane transport [GO:0006893],cytoskeleton [GO:0005856]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; GTP-Rho binding [GO:0017049]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; exocyst localization [GO:0051601]; exocytosis [GO:0006887]; Golgi to plasma membrane transport [GO:0006893],exocyst [GO:0000145]; plasma membrane [GO:0005886]; pollen tube tip [GO:0090404]; acceptance of pollen [GO:0060321]; exocytosis [GO:0006887]; pollen tube development [GO:0048868] TISSUE SPECIFICITY: Widely expressed. Preferentially expressed in tissues containing dividing and expanding cells, such as the shoot apical meristem, root tip, lateral root primordia and developing embryos. {ECO:0000269|PubMed:23495664}. locus:2015328;,locus:2015418; AT1G47560,AT1G47550 exocyst complex component Os03g0625700 protein (Fragment) Q0DQ78 Q0DQ78_ORYSJ Os03g0625700 OSNPB_030625700 ENOG411DT7Y MSH4 F4JP48,A0A1P8B358 MSH4_ARATH,A0A1P8B358_ARATH DNA mismatch repair protein MSH4 (AtMSH4) (MutS protein homolog 4),MUTS-like protein 4 DISRUPTION PHENOTYPE: Normal vegetative growth but severe reduction in fertility due to a decrease in chiasma frequency at metaphase I of meiosis. {ECO:0000269|PubMed:15489296}. Normal vegetative growth and development but moderate to severe reduction in fertility. Meiosis defective specifically the presence of numerous univalents at metaphase I and a marked reduction in chiasma frequency. Early development of meiotic nuclei appears normal but synapsis of homologous chromosomes is delayed and may be incomplete.,This double mutant has even lower fertility and shorter siliques than atrpa1 mutants. These mutants have a residual chiasmata frequency and distribution comparable to msh4 mutants. Severely reduced fertility due to defects in meiosis-G. Jones-2004 FUNCTION: Involved in meiotic recombination in association with MSH5. Required for reciprocal recombination and proper segregation of homologous chromosomes at meiosis. Promotes homologous recombination through facilitating chiasma formation during prophase I. Involved in the control of class I crossovers formation. {ECO:0000269|PubMed:15489296, ECO:0000269|PubMed:17530928, ECO:0000269|PubMed:19153602}. 89015,82745 DNA mismatch repair protein MSH4 (AtMSH4) (MutS protein homolog 4),MUTS-like protein 4 condensed nuclear chromosome [GO:0000794]; germ cell nucleus [GO:0043073]; plasmodesma [GO:0009506]; synaptonemal complex [GO:0000795]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; mismatched DNA binding [GO:0030983]; chiasma assembly [GO:0051026]; homologous chromosome segregation [GO:0045143]; meiotic mismatch repair involved in reciprocal meiotic recombination [GO:0010777]; mismatch repair [GO:0006298]; synapsis [GO:0007129],ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:15489296}. locus:2130913; AT4G17380 mutS protein homolog Os07g0486000 protein C7J4K5 C7J4K5_ORYSJ Os07g0486000 Os07g0486000 OSNPB_070486000 ENOG411DT7X Q9C5G8,Q84J57,A0A1P8AX42,A0A1P8AX18 Q9C5G8_ARATH,Q84J57_ARATH,A0A1P8AX42_ARATH,A0A1P8AX18_ARATH AT3g54190/F24B22_150 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g54190),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At2g38630),Transducin/WD40 repeat-like superfamily protein 53420,53465,37803,45149 AT3g54190/F24B22_150 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g54190),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At2g38630),Transducin/WD40 repeat-like superfamily protein integral component of membrane [GO:0016021] locus:2080305;,locus:2064201; AT3G54190,AT2G38630 expressed protein Os05g0482600 protein,Expressed protein (Os12g0498300 protein),Os02g0159400 protein (Fragment) Q0DH92,Q2QQD3,A0A0P0VF12 Q0DH92_ORYSJ,Q2QQD3_ORYSJ,A0A0P0VF12_ORYSJ Os05g0482600 Os05g0482600 OSNPB_050482600,Os12g0498300 LOC_Os12g31440 OSNPB_120498300,Os02g0159400 OSNPB_020159400 ENOG411DT7Z POLA Q9FHA3 DPOLA_ARATH DNA polymerase alpha catalytic subunit (EC 2.7.7.7) Leaf incurvature; early flowering; flowers display partial homeotic transformations of sepals into carpels and of petals into stamens. Null: Male and female gametophyte defective; Rare embryo defective; Knockdown: Curled leaves; Abnormal floral morphology; Early flowering-J. Barrero-2007 FUNCTION: Polymerase alpha in a complex with DNA primase is a replicative polymerase. MISCELLANEOUS: In eukaryotes there are five DNA polymerases: alpha, beta, gamma, delta, and epsilon which are responsible for different reactions of DNA synthesis. R-ATH-113501;R-ATH-174411;R-ATH-174430;R-ATH-68952;R-ATH-68962;R-ATH-69091;R-ATH-69166;R-ATH-69183; Purine metabolism (00230),Pyrimidine metabolism (00240),DNA replication (03030),Metabolic pathways (01100) 2.7.7.7 170479 DNA polymerase alpha catalytic subunit (EC 2.7.7.7) alpha DNA polymerase:primase complex [GO:0005658]; 3'-5' exonuclease activity [GO:0008408]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA primase activity [GO:0003896]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; nucleoside binding [GO:0001882]; nucleotide binding [GO:0000166]; DNA replication initiation [GO:0006270]; double-strand break repair via nonhomologous end joining [GO:0006303]; lagging strand elongation [GO:0006273]; leading strand elongation [GO:0006272]; leaf morphogenesis [GO:0009965] locus:2155593; AT5G67100 DNA polymerase DNA polymerase alpha catalytic subunit (EC 2.7.7.7) O48653 DPOLA_ORYSJ Os01g0868300 LOC_Os01g64820 P0677H08.20 FUNCTION: Polymerase alpha in a complex with DNA primase is a replicative polymerase. MISCELLANEOUS: In eukaryotes there are five DNA polymerases: alpha, beta, gamma, delta, and epsilon which are responsible for different reactions of DNA synthesis. ENOG411DT7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cadmium zinc-transporting ATPase Os06g0690700 protein (Putative cadmium resistance protein),Os06g0690700 protein (Fragment),Os06g0690800 protein Q654Y9,A0A0P0X0E4,A0A0P0X0R1 Q654Y9_ORYSJ,A0A0P0X0E4_ORYSJ,A0A0P0X0R1_ORYSJ Os06g0690700 Os06g0690700 OSNPB_060690700 P0532H03.5 P0661G04.38,Os06g0690700 OSNPB_060690700,Os06g0690800 OSNPB_060690800 ENOG411DT7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ripening-related protein Putative ripening-related protein 5,Os10g0490400 protein Q8LN49,A0A0P0XVL6 RIP5_ORYSJ,A0A0P0XVL6_ORYSJ Os10g0490500 LOC_Os10g34890 P0031G09.2,Os10g0490400 OSNPB_100490400 ENOG411DT7S Q9SAJ5 PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540 88851 Pentatricopeptide repeat-containing protein At1g79540 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2206420; AT1G79540 Pentatricopeptide repeat-containing protein Os09g0110200 protein (PPR protein-like protein) Q6YW98 Q6YW98_ORYSJ Os09g0110200 OSNPB_090110200 P0501E09.45 P0646B04.9 ENOG411DT7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNase S-like protein Os09g0538000 protein (Putative RNase S-like protein) (cDNA clone:006-201-H04, full insert sequence) (cDNA clone:006-203-D06, full insert sequence) (cDNA clone:006-303-E09, full insert sequence) (cDNA clone:006-307-C07, full insert sequence) (cDNA clone:006-307-H08, full insert sequence) (cDNA clone:006-310-B09, full insert sequence) (cDNA clone:006-310-D05, full insert sequence) (cDNA clone:006-310-H05, full insert sequence),Os09g0538000 protein (Putative RNase S-like protein) Q69JF4,Q69JF3 Q69JF4_ORYSJ,Q69JF3_ORYSJ P0229B10.19-1 Os09g0538000 P0569E11.41-1 OsJ_30155 OSNPB_090538000,P0229B10.19-2 P0569E11.41-2 Os09g0538000 OSNPB_090538000 ENOG411DT7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF604 Fringe protein, putative, expressed (Os10g0534700 protein) (cDNA clone:J023123I12, full insert sequence) Q8LN26 Q8LN26_ORYSJ Os10g0534700 LOC_Os10g39020 Os10g0534700 OSJNBa0053C23.29 OSNPB_100534700 ENOG411DT7T Q683G3 Q683G3_ARATH Transducin family protein / WD-40 repeat family protein (mRNA, clone: RAFL21-57-G12) 57980 Transducin family protein / WD-40 repeat family protein (mRNA, clone: RAFL21-57-G12) locus:2157338; AT5G50970 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DT7W YUP8H12R.20 A0A1P8AVJ4,F4IDJ4 A0A1P8AVJ4_ARATH,F4IDJ4_ARATH ARM repeat superfamily protein 148941,148198 ARM repeat superfamily protein locus:2207275; AT1G79190 Inherit from KOG: TELO2 interacting protein 1 Os10g0575800 protein A0A0P0XXZ4 A0A0P0XXZ4_ORYSJ Os10g0575800 OSNPB_100575800 ENOG411DT7V SCPL50 Q9M9Q6 SCP50_ARATH Serine carboxypeptidase-like 50 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. 3.4.16.- 49222 Serine carboxypeptidase-like 50 (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}. locus:2196199; AT1G15000 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-),Os06g0561100 protein,Os01g0215100 protein Q75HY2,A0A0P0WXW0,A0A0P0UZR3 Q75HY2_ORYSJ,A0A0P0WXW0_ORYSJ,A0A0P0UZR3_ORYSJ Os05g0582800 Os05g0582800 OJ1651_G11.14 OsJ_19691 OSJNBb0035N21.13 OSNPB_050582800,Os06g0561100 OSNPB_060561100,Os01g0215100 OSNPB_010215100 ENOG411EJI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET domain NA NA NA NA NA NA NA ENOG411EJI3 O22232 FBL52_ARATH Putative F-box/LRR-repeat protein At3g44810 51012 Putative F-box/LRR-repeat protein At3g44810 locus:2101635; AT3G44810 F-box domain F-box domain containing protein, expressed (Os11g0209100 protein) Q2R913 Q2R913_ORYSJ Os11g0209100 LOC_Os11g10330 Os11g0209100 OSNPB_110209100 ENOG411EJI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJI8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0464300 protein Q6I5K2 Q6I5K2_ORYSJ Os05g0464300 OJ1280_A04.14 OsJ_18840 OSJNBa0009E21.2 OSNPB_050464300 ENOG411EJI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYN1 PAE9,MRO11.9 B9DFR3,F4KEB8 PAE9_ARATH,F4KEB8_ARATH Pectin acetylesterase 9 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) DISRUPTION PHENOTYPE: Reduced inflorescence stem growth and increased levels of acetate in rosette leaves. {ECO:0000269|PubMed:25115560}. FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000269|PubMed:25115560}.,FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. 3.1.1.- 50038,48080 Pectin acetylesterase 9 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] locus:2172833; AT5G23870 Pectinacetylesterase Pectin acetylesterase (EC 3.1.1.-) Q0IVV9 Q0IVV9_ORYSJ Os10g0550500 OSNPB_100550500 FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. ENOG411DYN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os04g0477300 protein (cDNA clone:002-138-G10, full insert sequence) B7F0X7 B7F0X7_ORYSJ Os04g0477300 OSNPB_040477300 ENOG411DYN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os09g0455900 protein (Putative PrMC3) (cDNA clone:006-204-A12, full insert sequence),Os09g0461700 protein (Putative PrMC3),Os09g0455500 protein (Putative PrMC3) Q67TQ8,Q67IZ8,Q67TR6 Q67TQ8_ORYSJ,Q67IZ8_ORYSJ,Q67TR6_ORYSJ Os09g0455900 Os09g0455900 B1342C04.22 OsJ_29621 OSNPB_090455900 P0025H07.41,Os09g0461700 Os09g0461700 OSJNBa0054F02.39 OSNPB_090461700,Os09g0455500 B1342C04.10 OSNPB_090455500 P0025H07.29 ENOG411DYN4 STA1 Q9ZT71 STA1_ARATH Protein STABILIZED1 (Pre-mRNA processing factor 6-like protein) (Protein EMBRYO DEFECTIVE 2770) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:16751345}. Null: Embryo defective; Transition; Knockdown: Small leaves with abnormal morphology; Short inflorescence stems; Early flowering-D. Meinke-2007 FUNCTION: Pre-mRNA splicing factor required for splicing and for the turnover of unstable transcripts. May be a U5 snRNP-associated protein involved in the formation of U4/U6-U5 tri-snRNP. Involved in responses to abiotic stresses. Involved in microRNAs (miRNAs) biogenesis by functioning in primary miRNAs (pri-miRNAs) splicing. Required for DNA methylation and transcriptional silencing through the RNA-directed DNA methylation (RdDM) pathway. {ECO:0000269|PubMed:16751345, ECO:0000269|PubMed:23268445, ECO:0000269|PubMed:23877244}. MISCELLANEOUS: The sta1-1 mutation causes the stabilization of the normally unstable STA1 transcript (PubMed:16751345) and increases the expression levels of miRNA target genes (PubMed:23268445). {ECO:0000305|PubMed:16751345, ECO:0000305|PubMed:23268445}. R-ATH-72163;R-ATH-72165; 115576 Protein STABILIZED1 (Pre-mRNA processing factor 6-like protein) (Protein EMBRYO DEFECTIVE 2770) Cajal body [GO:0015030]; catalytic step 2 spliceosome [GO:0071013]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of miRNA metabolic process [GO:2000630]; positive regulation of primary miRNA processing [GO:2000636]; response to cold [GO:0009409]; RNA-directed DNA methylation [GO:0080188]; seed germination [GO:0009845]; spliceosomal tri-snRNP complex assembly [GO:0000244] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16751345}. locus:2128751; AT4G03430 pre-mRNA-processing factor Os10g0498600 protein (Fragment),Os01g0263600 protein (Fragment),Os01g0263600 protein Q0IWN2,A0A0P0V194,A0A0P0V1B4 Q0IWN2_ORYSJ,A0A0P0V194_ORYSJ,A0A0P0V1B4_ORYSJ Os10g0498600 OSNPB_100498600,Os01g0263600 OSNPB_010263600 ENOG411DYNK CES101 O64793,Q9LW83,A0A1I9LPL2,A0A1P8AN24,A0A1P8AN06,A0A1P8AN03,A0A1P8AN14,A0A1P8AN12,A0A1P8AN35,A0A1I9LPL3,A0A1I9LPL1,A0A1I9LPL5,A0A1I9LPL6 Y1675_ARATH,CE101_ARATH,A0A1I9LPL2_ARATH,A0A1P8AN24_ARATH,A0A1P8AN06_ARATH,A0A1P8AN03_ARATH,A0A1P8AN14_ARATH,A0A1P8AN12_ARATH,A0A1P8AN35_ARATH,A0A1I9LPL3_ARATH,A0A1I9LPL1_ARATH,A0A1I9LPL5_ARATH,A0A1I9LPL6_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase CES101 (EC 2.7.11.1) (Protein CALLUS EXPRESSION OF RBCS 101),Lectin protein kinase family protein FUNCTION: Promotes the expression of genes involved in photosynthesis at least in dedifferentiated calli. {ECO:0000269|PubMed:16597626}. 2.7.11.1 93072,96285,72858,69720,94269,66347,75528,88020,93238,81409,82682,98985,84908 G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase CES101 (EC 2.7.11.1) (Protein CALLUS EXPRESSION OF RBCS 101),Lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; innate immune response [GO:0045087]; protein phosphorylation [GO:0006468]; response to fungus [GO:0009620],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Mostly expressed in leaves, and, to a lower extent, in roots and flowers. {ECO:0000269|PubMed:16597626}. locus:2093397; AT1G67520,AT3G16030 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DYNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os06g0118700 protein (Putative nucleoid DNA-binding protein cnd41) (cDNA clone:J023003I22, full insert sequence),Os06g0119600 protein (Putative nucleoid DNA-binding protein cnd41) (cDNA clone:001-036-C01, full insert sequence) (cDNA clone:J013067G18, full insert sequence),Os06g0118000 protein (Fragment) Q5VPR6,Q5VPQ6,A0A0P0WS73 Q5VPR6_ORYSJ,Q5VPQ6_ORYSJ,A0A0P0WS73_ORYSJ Os06g0118700 OSJNBa0062J13.28 OSNPB_060118700,Os06g0119600 OSJNBa0062J13.43 OSNPB_060119600 P0660D08.12,Os06g0118000 OSNPB_060118000 ENOG411DYNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os07g0115700 protein,Os07g0115720 protein A0A0P0X2A7,A0A0P0X203 A0A0P0X2A7_ORYSJ,A0A0P0X203_ORYSJ Os07g0115700 OSNPB_070115700,Os07g0115720 OSNPB_070115720 ENOG411DYNG GRP23 Q9LEX6,Q9SY69,Q9LEX5,A0A1P8BD48,Q3E8X7,Q303Z7 PP289_ARATH,PPR29_ARATH,PP290_ARATH,A0A1P8BD48_ARATH,Q3E8X7_ARATH,Q303Z7_ARATH Pentatricopeptide repeat-containing protein At3g60960, mitochondrial,Pentatricopeptide repeat-containing protein At1g10270 (Protein GLUTAMINE-RICH PROTEIN 23),Pentatricopeptide repeat-containing protein At3g60980, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein Mutation is lethal in the homozygous state.,In addition to the arrested embryo phenotype aberrant cell divisions were also observed: These resulted in the formation of an elongated apical cell or embryo proper instead of the typical globular embryo in wild-type plants. A notable phenotype of the set09078 mutant is that ~19% of the mutant embryos displayed aberrant positioning of the division planes and asynchronous divisions. Furthermore asynchronous divisions of the embryo proper and suspensor cells were observed.,In the homozygous mutant progeny embryo development was arrested at the early globular stage. Although the normal embryos continued to develop the arrested embryos subsequently became shriveled and finally degenerated. The mutant embryos never reached the heart stage but arrested by the early globular stage. Despite the aberrant embryo development phenotype no developmental defect was observed during endosperm development in the mutant ovules.,Of the 269 mutant embryos examined 6% were arrested at the 1-cell embryo stage 19% were arrested at the 2- to 4-cell stage 38% were arrested from the 6-cell to the 8-cell stage and 18% were arrested at the 16-cell stage. Embryo defective; Preglobular-W.C. Yang; Sundaresan-2007 FUNCTION: May function as a transcriptional regulator essential for early embryogenesis. {ECO:0000269|PubMed:16489121}. 45506,102093,47368,32021,43889,48858 Pentatricopeptide repeat-containing protein At3g60960, mitochondrial,Pentatricopeptide repeat-containing protein At1g10270 (Protein GLUTAMINE-RICH PROTEIN 23),Pentatricopeptide repeat-containing protein At3g60980, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA processing [GO:0031425]; RNA modification [GO:0009451],mitochondrion [GO:0005739]; nucleus [GO:0005634]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; RNA modification [GO:0009451]; transcription, DNA-templated [GO:0006351],intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; response to oxidative stress [GO:0006979]; RNA modification [GO:0009451],chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA processing [GO:0031425]; RNA modification [GO:0009451] DEVELOPMENTAL STAGE: Expressed in developing embryos up to the heart stage. {ECO:0000269|PubMed:16489121}. TISSUE SPECIFICITY: Ubiquitous but preferentially expressed in gametophytes and young embryos. {ECO:0000269|PubMed:16489121}. locus:2100977;,locus:2012868;,locus:2101002;,locus:2832005;,locus:2146559; AT3G60960,AT1G10270,AT3G60980,AT5G28380,AT5G28340 Pentatricopeptide repeat-containing protein 'putative pentatricopeptide (PPR) repeat-containing protein, PF01535' (Os05g0365500 protein) (Putative pentatricopeptide (PPR) repeat-containing protein) (Putative pentatricopeptide repeat-containing protein) Q75IT2 Q75IT2_ORYSJ OSJNBb0111K12.9 Os05g0365500 OSJNBa0090H02.1 OSNPB_050365500 P0683B02.13 ENOG411DYNF UGT86A2,UGT86A1 Q9ZUV0,Q9SJL0 U86A2_ARATH,U86A1_ARATH UDP-glycosyltransferase 86A2 (EC 2.4.1.-),UDP-glycosyltransferase 86A1 (EC 2.4.1.-) ARA:AT2G28080-MONOMER;,ARA:AT2G36970-MONOMER; 2.4.1.- 53367,54965 UDP-glycosyltransferase 86A2 (EC 2.4.1.-),UDP-glycosyltransferase 86A1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2046193;,locus:2057976; AT2G28080,AT2G36970 transferase activity transferring hexosyl groups Glycosyltransferase (EC 2.4.1.-) A0A0N7KRV1 A0A0N7KRV1_ORYSJ Os10g0442400 OSNPB_100442400 ENOG411DYND Q9LNF4,Q9LUU7 P2C13_ARATH,P2C43_ARATH Probable protein phosphatase 2C 13 (AtPP2C13) (EC 3.1.3.16),Probable protein phosphatase 2C 43 (AtPP2C43) (EC 3.1.3.16) 3.1.3.16 42106,47599 Probable protein phosphatase 2C 13 (AtPP2C13) (EC 3.1.3.16),Probable protein phosphatase 2C 43 (AtPP2C43) (EC 3.1.3.16) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2023812;,locus:2089035; AT1G48040,AT3G17250 phosphatase 2C NA NA NA NA NA NA NA ENOG411DYNY Q1PDF2 Q1PDF2_ARATH Transmembrane protein 57337 Transmembrane protein integral component of membrane [GO:0016021] locus:2158581; AT5G67550 NA Os11g0264500 protein A0A0P0Y1J7 A0A0P0Y1J7_ORYSJ Os11g0264500 OSNPB_110264500 ENOG411DYNR T10K17.120 Q9M2Q7 Q9M2Q7_ARATH At3g57910 (D111/G-patch domain-containing protein) (Uncharacterized protein At3g57910) (Uncharacterized protein T10K17.120) 30781 At3g57910 (D111/G-patch domain-containing protein) (Uncharacterized protein At3g57910) (Uncharacterized protein T10K17.120) kinetochore [GO:0000776]; nucleic acid binding [GO:0003676] locus:2095778; AT3G57910 domain-containing protein Os08g0509500 protein (cDNA clone:J013151M13, full insert sequence),Os09g0253166 protein Q7EXZ3,A0A0P0XK32 Q7EXZ3_ORYSJ,A0A0P0XK32_ORYSJ Os08g0509500 B1168A08.32 OSJNBa0016N23.107 OSNPB_080509500,Os09g0253166 OSNPB_090253166 ENOG411DYNP ACBP2,ACBP1 Q9STP8,Q9SM23,A0A1P8B4T1 ACBP2_ARATH,ACBP1_ARATH,A0A1P8B4T1_ARATH Acyl-CoA-binding domain-containing protein 2 (Acyl-CoA binding protein 2),Acyl-CoA-binding domain-containing protein 1 (Acyl-CoA binding protein 1),Acyl-CoA binding protein 2 DISRUPTION PHENOTYPE: Increased sensitivity to lead ions. {ECO:0000269|PubMed:18182029}. Resistant to freezing-M. Chye-2010 FUNCTION: Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with palmitoyl-CoA, but not with oleoyl-CoA. Binds to lead ions (Pb). May function as an intracellular carrier of acyl-CoA esters. Required for proper phospholipid and, to a lower extent, galactolipid composition. {ECO:0000269|PubMed:11202434, ECO:0000269|PubMed:15604682, ECO:0000269|PubMed:18182029, ECO:0000269|Ref.2}.,FUNCTION: Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA. Confers tolerance and binds to lead ions Pb(2+), probably by promoting lead translocation from roots to shoots. May function as an intracellular carrier of acyl-CoA esters (By similarity). {ECO:0000250, ECO:0000269|PubMed:16231156, ECO:0000269|PubMed:18182029}. R-ATH-77289; 38480,37527,28356 Acyl-CoA-binding domain-containing protein 2 (Acyl-CoA binding protein 2),Acyl-CoA-binding domain-containing protein 1 (Acyl-CoA binding protein 1),Acyl-CoA binding protein 2 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; glyoxysome [GO:0009514]; integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; plasma membrane [GO:0005886]; fatty-acyl-CoA binding [GO:0000062]; lead ion binding [GO:0032791]; lipid binding [GO:0008289]; lipid transport [GO:0006869]; response to hypoxia [GO:0001666]; response to lead ion [GO:0010288],endoplasmic reticulum membrane [GO:0005789]; extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; fatty-acyl-CoA binding [GO:0000062]; lead ion binding [GO:0032791]; lipid binding [GO:0008289]; phosphatidic acid binding [GO:0070300]; lipid metabolic process [GO:0006629]; lipid transport [GO:0006869]; regulation of seed germination [GO:0010029]; regulation of seedling development [GO:1900140]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to lead ion [GO:0010288]; seed dormancy process [GO:0010162],integral component of membrane [GO:0016021]; fatty-acyl-CoA binding [GO:0000062] DEVELOPMENTAL STAGE: Expressed in embryos at the cotyledons, hypocotyls, procambiums, especially in epidermal cells and axis. {ECO:0000269|PubMed:10363372}. TISSUE SPECIFICITY: Mostly expressed in roots and flowers, and, to a lower extent, in stems, pods and leaves (at protein level). {ECO:0000269|PubMed:11202434, ECO:0000269|Ref.2}.,TISSUE SPECIFICITY: Expressed at low levels in roots, stems, leaves, flowers, and siliques, especially within seeds. {ECO:0000269|PubMed:9862500, ECO:0000269|Ref.9}. locus:2137380;,locus:2178426; AT4G27780,AT5G53470 acyl-CoA-binding domain-containing protein Acyl-CoA-binding domain-containing protein 4 (Acyl-CoA binding protein 4) (OsACBP4),Os04g0681900 protein A3AYR1,A0A0P0WGT7 ACBP4_ORYSJ,A0A0P0WGT7_ORYSJ ACBP4 Os04g0681900 LOC_Os04g58550 OsJ_16661 OSJNBa0032F06.12,Os04g0681900 OSNPB_040681900 FUNCTION: Binds medium- and long-chain acyl-CoA esters with high affinity. Can interact in vitro with palmitoyl-CoA, linoleoyl-CoA and linolenoyl-CoA (PubMed:21128943). Binds phosphatidic acid (PA) and phosphatidylcholine (PC) in vitro. May play a role in the biosynthesis of phospholipids (PubMed:24738983). {ECO:0000269|PubMed:21128943, ECO:0000269|PubMed:24738983}. ENOG411DYNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/calcium exchanger protein NA NA NA NA NA NA NA ENOG411DYNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411DYNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os02g0625100 protein Q0DZE7 Q0DZE7_ORYSJ Os02g0625100 Os02g0625100 OsJ_07586 OSNPB_020625100 ENOG411DYNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EJIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECM7 F4IB60,A0A1P8AS57 F4IB60_ARATH,A0A1P8AS57_ARATH Leucine-rich repeat protein kinase family protein 97780,103530 Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2017572; AT1G51790 STYKc NA NA NA NA NA NA NA ENOG411ECM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NA NA NA NA NA NA NA ENOG411EJIR F4HZB9 F4HZB9_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 17664 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein locus:1006230669; AT1G03103 Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411ECM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Acid_phosphat_A Os01g0777500 protein (Fragment) A0A0P0V8V4 A0A0P0V8V4_ORYSJ Os01g0777500 OSNPB_010777500 ENOG411ECM4 TAO1,RPP1,T22K7_80,T18B22.30,MXI10.1,MSI17.60 Q9FI14,F4J339,Q8H1N6,Q9M285,Q9M1P1,A0A1P8BFM2,Q9FF28,A0A1I9LP82,Q9LFN1,Q9SS05,F4J361,Q9M8X8,A0A1P8AR74,A0A1P8BAG7,A0A1P8BBN1,A0A1I9LTD7,A0A1P8BBP6,A0A1P8BBM6,A0A1I9LNB0,F4J359,F4IBL4,A0A1I9LP83,F4I270,F4J3L8 TAO1_ARATH,RPP1_ARATH,Q8H1N6_ARATH,Q9M285_ARATH,Q9M1P1_ARATH,A0A1P8BFM2_ARATH,Q9FF28_ARATH,A0A1I9LP82_ARATH,Q9LFN1_ARATH,Q9SS05_ARATH,F4J361_ARATH,Q9M8X8_ARATH,A0A1P8AR74_ARATH,A0A1P8BAG7_ARATH,A0A1P8BBN1_ARATH,A0A1I9LTD7_ARATH,A0A1P8BBP6_ARATH,A0A1P8BBM6_ARATH,A0A1I9LNB0_ARATH,F4J359_ARATH,F4IBL4_ARATH,A0A1I9LP83_ARATH,F4I270_ARATH,F4J3L8_ARATH Disease resistance protein TAO1 (Protein TARGET OF AVRB OPERATION 1),Probable disease resistance protein RPP1 (Protein RECOGNITION OF PERONOSPORA PARASITICA 1),At3g04210/T6K12_17 (Disease resistance protein (TIR-NBS class)),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistence-like protein),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein homolog) (Putative disease resistance protein homolog),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) (RPP1 disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (F12P19.1 protein),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein),Target of AVRB operation1,TIR-NBS-LRR class disease resistance protein loss of Pseudomonas syringae effector AvrB perception Resistant to bacterial virulence gene B (AvrB)-J. Dangl-2008,Altered response to fungal infection-J. Jones-1998 FUNCTION: TIR-NB-LRR receptor-like protein that contributes to disease resistance induced by the Pseudomonas syringae type III effector AvrB. Acts additively with RPM1 to generate a full disease resistance response to P.syringae expressing this type III effector. {ECO:0000269|PubMed:18424557}.,FUNCTION: TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis. {ECO:0000250|UniProtKB:F4JNA9}. 134222,136132,60147,115785,138977,125195,95817,141560,134219,118945,139091,102043,106418,97415,131189,64152,128755,132087,82387,141981,120544,135732,155202,98511 Disease resistance protein TAO1 (Protein TARGET OF AVRB OPERATION 1),Probable disease resistance protein RPP1 (Protein RECOGNITION OF PERONOSPORA PARASITICA 1),At3g04210/T6K12_17 (Disease resistance protein (TIR-NBS class)),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistence-like protein),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein homolog) (Putative disease resistance protein homolog),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) (RPP1 disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (F12P19.1 protein),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein),Target of AVRB operation1,TIR-NBS-LRR class disease resistance protein ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; signal transduction [GO:0007165],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; LRR domain binding [GO:0030275]; defense response [GO:0006952]; defense response to fungus, incompatible interaction [GO:0009817]; response to oomycetes [GO:0002239]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; regulation of cellular response to stress [GO:0080135]; signal transduction [GO:0007165],ADP binding [GO:0043531],ADP binding [GO:0043531]; defense response to bacterium [GO:0042742]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2163426;,locus:2076043;,locus:2103065;,locus:2100182;,locus:2147992;,locus:2177401;,locus:2098110;,locus:2098145;,locus:2009744;,locus:2007121;,locus:2103050; AT5G44510,AT3G44480,AT3G04210,AT3G44400,AT3G44630,AT5G11250,AT5G38350,AT1G65850,AT3G44670,AT1G69550,AT3G04220 AT5G11250 (E 0.0) disease resistance protein (TIR-NBS-LRR class) NA NA NA NA NA NA NA ENOG411ECM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dehydrogenase NA NA NA NA NA NA NA ENOG411ECM0 ZFWD3,ZFWD4,MHK7.11 Q9FKR9,Q9FE91,A0A1P8BAA9 C3H59_ARATH,C3H62_ARATH,A0A1P8BAA9_ARATH Zinc finger CCCH domain-containing protein 59 (AtC3H59) (Zinc finger CCCH domain and WD40 repeat-containing protein 3),Zinc finger CCCH domain-containing protein 62 (AtC3H62) (Zinc finger CCCH domain and WD40 repeat-containing protein 4),WD-40 repeat family protein / zfwd3 protein (ZFWD3) 51297,46070,48097 Zinc finger CCCH domain-containing protein 59 (AtC3H59) (Zinc finger CCCH domain and WD40 repeat-containing protein 3),Zinc finger CCCH domain-containing protein 62 (AtC3H62) (Zinc finger CCCH domain and WD40 repeat-containing protein 4),WD-40 repeat family protein / zfwd3 protein (ZFWD3) DNA binding [GO:0003677]; metal ion binding [GO:0046872],metal ion binding [GO:0046872] locus:2164456;,locus:2155904; AT5G40880,AT5G49200 Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411EJIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJIY MJC20.22 Q8GW66 Q8GW66_ARATH Uncharacterized protein 6632 Uncharacterized protein locus:2165720; AT5G42110 NA NA NA NA NA NA NA NA ENOG411EJID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DSS1/SEM1 family Os01g0273000 protein (cDNA, clone: J100075O07, full insert sequence) Q0JNQ2 Q0JNQ2_ORYSJ Os01g0273000 Os01g0273000 OsJ_01255 OSNPB_010273000 ENOG411EJIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger double-stranded RNA-binding NA NA NA NA NA NA NA ENOG411EJIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os02g0474000 protein A0A0P0VIY5 A0A0P0VIY5_ORYSJ Os02g0474000 OSNPB_020474000 ENOG411EGVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E6YJ Q29PW8,Q3EBS3 Q29PW8_ARATH,Q3EBS3_ARATH At1g07795 (Forkhead box protein G1),Forkhead box protein G1 12810,12389 At1g07795 (Forkhead box protein G1),Forkhead box protein G1 integral component of membrane [GO:0016021] locus:505006108;,locus:504955993; AT1G07795,AT2G28725 NA Expressed protein (Os12g0566600 protein) Q2QNG4 Q2QNG4_ORYSJ LOC_Os12g37900 Os12g0566600 OSNPB_120566600 ENOG411E6YM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: reductase NA NA NA NA NA NA NA ENOG411E6YB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0916700 protein Q8RZW6 Q8RZW6_ORYSJ Os01g0916700 OSNPB_010916700 P0004D12.38 P0413C03.12 ENOG411E6YY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) Expressed protein (Os03g0302500 protein) (cDNA clone:002-101-B11, full insert sequence) Q10MM9 Q10MM9_ORYSJ LOC_Os03g19040 Os03g0302500 OSNPB_030302500 ENOG411E6YV Q8GXY3 Q8GXY3_ARATH ATP-dependent helicase/nuclease subunit (At3g18510) (Uncharacterized protein At3g18510/MYF24_22) 7803 ATP-dependent helicase/nuclease subunit (At3g18510) (Uncharacterized protein At3g18510/MYF24_22) integral component of membrane [GO:0016021]; helicase activity [GO:0004386] locus:2095072; AT3G18510 NA Os06g0618300 protein (cDNA clone:J013102L13, full insert sequence) A3BDK9 A3BDK9_ORYSJ Os06g0618300 OsJ_21981 OSNPB_060618300 ENOG411E6YU Q42044 Q42044_ARATH At2g45180 (At2g45180/T14P1.1) (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Expressed protein) (Putative proline-rich protein) 13955 At2g45180 (At2g45180/T14P1.1) (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Expressed protein) (Putative proline-rich protein) chloroplast thylakoid membrane [GO:0009535]; protein domain specific binding [GO:0019904] locus:2050901; AT2G45180 14 kDa proline-rich protein DC2.15-like NA NA NA NA NA NA NA ENOG411E6Y8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0557800 protein (Fragment) A0A0N7KS72 A0A0N7KS72_ORYSJ Os10g0557800 OSNPB_100557800 ENOG411E6Y9 O82232,F4JKH9 RC22_ARATH,F4JKH9_ARATH UPF0057 membrane protein At2g24040,Low temperature and salt responsive protein family 8625,8759 UPF0057 membrane protein At2g24040,Low temperature and salt responsive protein family integral component of membrane [GO:0016021] locus:2061501;,locus:1006230338; AT2G24040,AT4G28088 Pfam:UPF0057 NA NA NA NA NA NA NA ENOG411E6Y2 AGL29 O64703 AGL29_ARATH Agamous-like MADS-box protein AGL29 FUNCTION: Probable transcription factor. 19753 Agamous-like MADS-box protein AGL29 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During embryogenesis, expressed in the chalazal endosperm. {ECO:0000269|PubMed:20631316}. TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. locus:2040819; AT2G34440 agamous-like MADS-box protein AGL61-like NA NA NA NA NA NA NA ENOG411E6Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os03g0442900 protein) (cDNA clone:J013033P18, full insert sequence) Q10IX1 Q10IX1_ORYSJ Os03g0442900 LOC_Os03g32790 Os03g0442900 OsJ_11410 OSNPB_030442900 ENOG411E6Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0782900 protein (cDNA clone:001-102-C04, full insert sequence) Q0DX03 Q0DX03_ORYSJ Os02g0782900 Os02g0782900 OSNPB_020782900 ENOG411E6Y7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0582800 protein (cDNA clone:002-140-A10, full insert sequence) Q6EPT2 Q6EPT2_ORYSJ Os02g0582800 OSJNBa0016D04.19 OSNPB_020582800 ENOG411E6Y4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os08g0482600 protein (Putative blue copper protein) (cDNA clone:001-118-G07, full insert sequence),Os08g0482700 protein (Putative blue copper protein) Q6ZFF2,Q6ZFF1 Q6ZFF2_ORYSJ,Q6ZFF1_ORYSJ Os08g0482600 OJ1111_H02.12 OsJ_27703 OSNPB_080482600,Os08g0482700 Os08g0482700 OJ1111_H02.13 OsJ_27704 OSNPB_080482700 ENOG411E8HW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0861000 protein) (cDNA clone:J023079A15, full insert sequence) Q7Y1D1 Q7Y1D1_ORYSJ LOC_Os03g64310 Os03g0861000 OsJ_13459 OSJNBa0033P04.6 OSNPB_030861000 ENOG411E8HV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0106500 protein (cDNA, clone: J090053L06, full insert sequence) Q657Y6 Q657Y6_ORYSJ Os01g0106500 OsJ_00054 OSNPB_010106500 P0005A05.20 ENOG411E8HE Q8GXE7,A0A1I9LP52,Q9MAC4,A0A1I9LP56,F4J2A7,A0A1I9LP53,A8MQH0 Q8GXE7_ARATH,A0A1I9LP52_ARATH,Q9MAC4_ARATH,A0A1I9LP56_ARATH,F4J2A7_ARATH,A0A1I9LP53_ARATH,A8MQH0_ARATH ATP synthase E chain (At5g15320) (GPI-anchored protein),ATP synthase E chain,ATP synthase E chain (At3g01130) (T4P13.18 protein) 5603,6683,5547,5129,5217,5257,5262 ATP synthase E chain (At5g15320) (GPI-anchored protein),ATP synthase E chain,ATP synthase E chain (At3g01130) (T4P13.18 protein) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; auxin polar transport [GO:0009926]; response to auxin [GO:0009733] locus:2150906;,locus:2102062; AT5G15320,AT3G01130 NA NA NA NA NA NA NA NA ENOG411E8HD Q8VYU9 Q8VYU9_ARATH At2g46730/F19D11.1 (Death domain associated protein) (Expressed protein) 17866 At2g46730/F19D11.1 (Death domain associated protein) (Expressed protein) locus:505006321; AT2G46735 NA NA NA NA NA NA NA NA ENOG411E8HM Q9SIM1 Q9SIM1_ARATH Uncharacterized protein At2g20480 7074 Uncharacterized protein At2g20480 locus:2054794; AT2G20480 NA Os09g0446000 protein Q67U44 Q67U44_ORYSJ Os09g0446000 Os09g0446000 OJ1123_B08.30 OsJ_29557 OSNPB_090446000 ENOG411E8HI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0695600 protein (cDNA clone:001-109-D05, full insert sequence) Q6YUQ1 Q6YUQ1_ORYSJ Os02g0695600 Os02g0695600 B1053A04.17 OsJ_08017 OSNPB_020695600 ENOG411E8H0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA polymerase delta subunit 4 NA NA NA NA NA NA NA ENOG411ECM9 Q9LFY3 Q9LFY3_ARATH At1g27030/T7N9_9 (T7N9.9) 35521 At1g27030/T7N9_9 (T7N9.9) locus:2205759; AT1G27030 Inherit from NOG: DUF1338 NA NA NA NA NA NA NA ENOG411ECM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411ECM2 Q9LS04,Q9C6X9,B3H6C3 FB187_ARATH,FB315_ARATH,FB311_ARATH Putative F-box protein At3g25750,Probable F-box protein At1g44080,F-box protein At4g35733 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 42083,40110,41399 Putative F-box protein At3g25750,Probable F-box protein At1g44080,F-box protein At4g35733 chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; double-strand break repair via homologous recombination [GO:0000724],chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; double-strand break repair via homologous recombination [GO:0000724]; protein ubiquitination [GO:0016567] locus:2037191;,locus:4515103495; AT3G25750,AT1G44080,AT4G35733 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411ECMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411ECMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411ECMG Q9SU80,Q9SU81 Q9SU80_ARATH,Q9SU81_ARATH Alkaline-phosphatase-like family protein (Uncharacterized protein AT4g29710) (Uncharacterized protein T16L4.220),Alkaline-phosphatase-like family protein (Nucleotide pyrophosphatase-like protein) (EC 3.6.1.9) (Putative nucleotide pyrophosphatase) ARA:GQT-2707-MONOMER;,ARA:AT4G29700-MONOMER; R-ATH-1660662;R-ATH-196843;R-ATH-6798695;R-ATH-6814848; 3.6.1.9 15035,51587 Alkaline-phosphatase-like family protein (Uncharacterized protein AT4g29710) (Uncharacterized protein T16L4.220),Alkaline-phosphatase-like family protein (Nucleotide pyrophosphatase-like protein) (EC 3.6.1.9) (Putative nucleotide pyrophosphatase) catalytic activity [GO:0003824]; metabolic process [GO:0008152],vacuole [GO:0005773]; NADH pyrophosphatase activity [GO:0035529]; metabolic process [GO:0008152] locus:2134378;,locus:2134363; AT4G29710,AT4G29700 type I phosphodiesterase nucleotide pyrophosphatase family protein NA NA NA NA NA NA NA ENOG411ECMF Q9CAW2,A0A1I9LPC5 Q9CAW2_ARATH,A0A1I9LPC5_ARATH DNAJ heat shock N-terminal domain-containing protein (Uncharacterized protein T9J14.7),DNAJ heat shock N-terminal domain-containing protein 129904,131951 DNAJ heat shock N-terminal domain-containing protein (Uncharacterized protein T9J14.7),DNAJ heat shock N-terminal domain-containing protein cytosol [GO:0005829] locus:2114880; AT3G04980 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411ECMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411ECMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECMW WAKL11,WAKL18,WAKL17,WAKL13 Q9LN59,Q0WNY5,Q9M092,Q9LMT9,A0A1P8B7G4 WAKLK_ARATH,WAKLN_ARATH,WAKLM_ARATH,WAKLL_ARATH,A0A1P8B7G4_ARATH Putative wall-associated receptor kinase-like 11 (EC 2.7.11.-),Wall-associated receptor kinase-like 18 (EC 2.7.11.-),Wall-associated receptor kinase-like 17 (EC 2.7.11.-),Putative wall-associated receptor kinase-like 13 (EC 2.7.11.-),Wall-associated kinase family protein FUNCTION: Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.,FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. 2.7.11.- 87391,88754,87304,85212,86200 Putative wall-associated receptor kinase-like 11 (EC 2.7.11.-),Wall-associated receptor kinase-like 18 (EC 2.7.11.-),Wall-associated receptor kinase-like 17 (EC 2.7.11.-),Putative wall-associated receptor kinase-like 13 (EC 2.7.11.-),Wall-associated kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674] locus:2016377;,locus:2126271;,locus:2126316;,locus:2030988; AT1G19390,AT4G31110,AT4G31100,AT1G17910 Wall-associated kinase NA NA NA NA NA NA NA ENOG411ECMV ROPGEF13 F4J1G1 ROGFD_ARATH Rop guanine nucleotide exchange factor 13 (AtRopGEF13) (Phytochrome interacting RopGEF 2) (Rho of plants guanine nucleotide exchange factor 13) FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. {ECO:0000250}. 65946 Rop guanine nucleotide exchange factor 13 (AtRopGEF13) (Phytochrome interacting RopGEF 2) (Rho of plants guanine nucleotide exchange factor 13) Rho guanyl-nucleotide exchange factor activity [GO:0005089] TISSUE SPECIFICITY: Specifically expressed in mature flowers. {ECO:0000269|PubMed:20551316}. locus:2093467; AT3G16130 PRONE (Plant-specific Rop nucleotide exchanger) NA NA NA NA NA NA NA ENOG411ECMU SRO3 O64592 SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 (Protein SIMILAR TO RCD ONE 3) FUNCTION: Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses. {ECO:0000250}. 34501 Probable inactive poly [ADP-ribose] polymerase SRO3 (Protein SIMILAR TO RCD ONE 3) nucleus [GO:0005634]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; multicellular organism development [GO:0007275] locus:2016159; AT1G70440 RCD1-SRO-TAF4 (RST) plant domain NA NA NA NA NA NA NA ENOG411ECMS EMB2813 Q8GZ43,Q84WJ2,F4HRU9,F4HRU7 YZR3_ARATH,PRI2_ARATH,F4HRU9_ARATH,F4HRU7_ARATH RanBP2-type zinc finger protein At1g67325,Probable DNA primase large subunit (EC 2.7.7.-),DNA primase large subunit (EC 2.7.7.-),DNA primase, large subunit family Embryo defective; Gametophyte defective (inferred)-D. Meinke-2009 FUNCTION: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication. {ECO:0000250}.,FUNCTION: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication. {ECO:0000256|PIRNR:PIRNR009449}. R-ATH-113501;R-ATH-174411;R-ATH-174430;R-ATH-68952;R-ATH-68962;R-ATH-69091;R-ATH-69166;R-ATH-69183; Purine metabolism (00230),Pyrimidine metabolism (00240),DNA replication (03030),Metabolic pathways (01100) 2.7.7.- 31234,52074,56216,51619 RanBP2-type zinc finger protein At1g67325,Probable DNA primase large subunit (EC 2.7.7.-),DNA primase large subunit (EC 2.7.7.-),DNA primase, large subunit family metal ion binding [GO:0046872]; mRNA binding [GO:0003729],alpha DNA polymerase:primase complex [GO:0005658]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA primase activity [GO:0003896]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697],plasmodesma [GO:0009506]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA primase activity [GO:0003896]; metal ion binding [GO:0046872],4 iron, 4 sulfur cluster binding [GO:0051539]; DNA primase activity [GO:0003896]; metal ion binding [GO:0046872] locus:504956287;,locus:2019539; AT1G67325,AT1G67320 DNA primase large subunit NA NA NA NA NA NA NA ENOG411ECMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family NA NA NA NA NA NA NA ENOG411ECMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family Os01g0122000 protein,E3 ubiquitin-protein ligase (EC 2.3.2.27) Q5ZD47,A0A0P0UXN8 Q5ZD47_ORYSJ,A0A0P0UXN8_ORYSJ Os01g0122000 Os01g0122000 OSNPB_010122000 P0445D12.8,Os01g0121950 OSNPB_010121950 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411DWD2 Q9LW36 Q9LW36_ARATH HECT-like ubiquitin-conjugating enzyme (E2)-binding protein 57936 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein locus:2088409; AT3G26750 Pfam:DUF2351 Os02g0130900 protein (cDNA clone:J033110M10, full insert sequence) Q6ZG93 Q6ZG93_ORYSJ Os02g0130900 OJ1007_D04.11 OsJ_05248 OSNPB_020130900 ENOG411DWD1 GH9B18 Q93YQ7,A0A1P8B8U0 GUN24_ARATH,A0A1P8B8U0_ARATH Endoglucanase 24 (EC 3.2.1.4) (Endo-1,4-beta glucanase 24),Glycosyl hydrolase 9B18 ARA:AT4G39010-MONOMER; 3.2.1.4 55495,43740 Endoglucanase 24 (EC 3.2.1.4) (Endo-1,4-beta glucanase 24),Glycosyl hydrolase 9B18 extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2120242; AT4G39010 Endoglucanase Endoglucanase 23 (EC 3.2.1.4) (Endo-1,4-beta glucanase 23) (OsGLU12) Q69NF5 GUN23_ORYSJ GLU12 Os09g0530200 LOC_Os09g36060 OJ1531_B07.26 ENOG411DWD0 RPN1B,RPN1A Q6XJG8,Q9SIV2,Q9SYE4 PSD2B_ARATH,PSD2A_ARATH,Q9SYE4_ARATH 26S proteasome non-ATPase regulatory subunit 2 homolog B (26S proteasome regulatory subunit RPN1b) (AtRPN1b) (26S proteasome regulatory subunit S2 homolog B),26S proteasome non-ATPase regulatory subunit 2 homolog A (26S proteasome regulatory subunit RPN1a) (AtRPN1a) (26S proteasome regulatory subunit S2 homolog A),26S proteasome non-ATPase regulatory subunit-like protein (Uncharacterized protein AT4g08140) (Uncharacterized protein F9M13.6) DISRUPTION PHENOTYPE: Normal phenotype. {ECO:0000269|PubMed:16169895}.,DISRUPTION PHENOTYPE: Embryo lethality due to development arrest at the globular stage with defects in the formation of the embryonic root, the protoderm, and procambium (PubMed:16169895). Increased cell sizes, anthocyanin accumulation, reduced growth rate, reduced fertility, decreased heat shock tolerance, increased oxidative stress tolerance (PubMed:19605416). Mutant displays enhanced susceptibility to the fungal pathogen G. cichoracearum and to virulent and avirulent bacterial Pto DC3000 strains, which indicated defects in basal defense and resistance (R) protein-mediated defense (PubMed:22577987). {ECO:0000269|PubMed:16169895, ECO:0000269|PubMed:19605416, ECO:0000269|PubMed:22577987}. Embryo lethal embryos arrest at globular stage. Embryo defective; Globular-U. Grossniklaus-2007 FUNCTION: Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}.,FUNCTION: Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Required during embryogenesis (PubMed:16169895). Required for optimal plant growth and stress responses (PubMed:19605416). Required for innate immunity (PubMed:22577987). {ECO:0000250, ECO:0000269|PubMed:16169895, ECO:0000269|PubMed:19605416, ECO:0000269|PubMed:22577987}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 97954,98144,9755 26S proteasome non-ATPase regulatory subunit 2 homolog B (26S proteasome regulatory subunit RPN1b) (AtRPN1b) (26S proteasome regulatory subunit S2 homolog B),26S proteasome non-ATPase regulatory subunit 2 homolog A (26S proteasome regulatory subunit RPN1a) (AtRPN1a) (26S proteasome regulatory subunit S2 homolog A),26S proteasome non-ATPase regulatory subunit-like protein (Uncharacterized protein AT4g08140) (Uncharacterized protein F9M13.6) nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; proteasome storage granule [GO:0034515]; enzyme regulator activity [GO:0030234]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163]; regulation of protein catabolic process [GO:0042176],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; proteasome complex [GO:0000502]; proteasome storage granule [GO:0034515]; enzyme regulator activity [GO:0030234]; ubiquitin binding [GO:0043130]; innate immune response [GO:0045087]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163]; regulation of cell cycle [GO:0051726]; regulation of protein catabolic process [GO:0042176]; response to salicylic acid [GO:0009751],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; proteasome regulatory particle, base subcomplex [GO:0008540]; proteasome storage granule [GO:0034515]; enzyme regulator activity [GO:0030234]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of protein catabolic process [GO:0042176] DEVELOPMENTAL STAGE: Detected in the entire flower with strong signals in carpels, especially in differentiating ovules and the carpel wall. Patchy localization with strong levels in particular cells. In anthers, present at a high level in tetrads of microspores and the tapetum. After fertilization, mostly observed in the embryo up to the heart stage and in the chalazal endospem. Expressed at high levels in silique wall at all stages of carpel development. {ECO:0000269|PubMed:16169895}.,DEVELOPMENTAL STAGE: Detected in the floral meristem and primordia of floral organs. During early stages of flower development, expressed in the whole floral meristem, especially in emerging primordia. Later present in developing carpels, particularly in emerging ovule primordia. After fertilization, observed in the embryo and the chalazal endosperm. High levels at the early embryogenesis stages that fade out later. Also present in the developing seed coat, the septum, and the silique wall. In the stamens, detected at high levels in the anthers. Observed in sporogenous cells and then in tetrads of microspores. {ECO:0000269|PubMed:16169895}. TISSUE SPECIFICITY: Expressed in stems, leaves, buds, flowers, siliques and developing seeds. {ECO:0000269|PubMed:14623884, ECO:0000269|PubMed:16169895}. locus:2121358;,locus:2046016;,locus:2128823; AT4G28470,AT2G20580,AT4G08140 26s proteasome regulatory subunit 26S proteasome non-ATPase regulatory subunit 2 homolog,Os02g0146700 protein (Fragment) Q6Z2Z3,B9FQQ6,Q6K2Q1,A0A0P0VEQ0 Q6Z2Z3_ORYSJ,B9FQQ6_ORYSJ,Q6K2Q1_ORYSJ,A0A0P0VEQ0_ORYSJ Os02g0146700 Os02g0146700 OJ1008_C03.11 OSNPB_020146700,Os06g0699900 OsJ_22525 OSNPB_060699900,Os09g0326800 Os09g0326800 OSNPB_090326800 P0692F07.34 P0706E03.1,Os02g0146700 OSNPB_020146700 FUNCTION: Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000256|PIRNR:PIRNR015965}. ENOG411DWD7 AtWAPL2,AtWAPL1 Q9C951,F4I7C7 Q9C951_ARATH,F4I7C7_ARATH Uncharacterized protein T7P1.16 (WAPL (Wings apart-like protein regulation of heterochromatin) protein),WAPL (Wings apart-like protein regulation of heterochromatin) protein 92934,103633 Uncharacterized protein T7P1.16 (WAPL (Wings apart-like protein regulation of heterochromatin) protein),WAPL (Wings apart-like protein regulation of heterochromatin) protein embryo development ending in seed dormancy [GO:0009793]; meiotic chromosome segregation [GO:0045132]; meiotic sister chromatid cohesion involved in meiosis I [GO:0010789]; mitotic sister chromatid cohesion [GO:0007064]; mitotic sister chromatid segregation [GO:0000070]; regulation of chromosome condensation [GO:0060623]; regulation of cohesin loading [GO:0071922] locus:2205991;,locus:2197399; AT1G61030,AT1G11060 Wings apart-like protein regulation of heterochromatin Expressed protein (Os10g0497000 protein) Q337H4 Q337H4_ORYSJ LOC_Os10g35380 Os10g0497000 OSNPB_100497000 ENOG411DWD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0534700 protein (Putative receptor-like protein kinase 4) (cDNA clone:001-022-H08, full insert sequence) Q7XIS7 Q7XIS7_ORYSJ OJ1131_E05.116 Os07g0534700 OsJ_24564 OSJNBa0039D04.37 OSNPB_070534700 ENOG411DWD4 TCP20 Q9LSD5 TCP20_ARATH Transcription factor TCP20 FUNCTION: Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. 33391 Transcription factor TCP20 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anatomical structure morphogenesis [GO:0009653]; transcription, DNA-templated [GO:0006351] locus:2092020; AT3G27010 Transcription factor Os01g0924400 protein (Putative transcription factor PCF3) (cDNA clone:J013106J07, full insert sequence),Os01g0246200 protein (Fragment),Os02g0641100 protein Q5JJP7,A0A0P0V0G5,A0A0P0VMK7 Q5JJP7_ORYSJ,A0A0P0V0G5_ORYSJ,A0A0P0VMK7_ORYSJ Os01g0924400 B1033B05.8 OsJ_04599 OSNPB_010924400 P0592G05.32,Os01g0246200 OSNPB_010246200,Os02g0641100 OSNPB_020641100 ENOG411DWD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411DWD8 GSR2 F4ID92 F4ID92_ARATH Uncharacterized protein Small rosette leaves in response to nitrate-C. Masclaux-Daubresse-2011 29725 Uncharacterized protein glutamate-ammonia ligase activity [GO:0004356]; glutamine biosynthetic process [GO:0006542] AT1G66200 glutamine synthetase Glutamine synthetase cytosolic isozyme 1-3 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;3) (OsGLN1;3) (OsGS1;3) Q4W8D0 GLN13_ORYSJ GLN1-3 Os03g0712800 LOC_Os03g50490 OsJ_12330 OSJNBb0033N16.19 ENOG411DWDS APUM23 Q9C552 PUM23_ARATH Pumilio homolog 23 (APUM-23) (AtPUM23) Slow growth; Small, serrated, pointed rosette leaves; Short roots without exogenous sucrose; Abnormal leaf venation; Freshly harvested seeds exhibit delayed germination-S. Choi-2010 FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 84828 Pumilio homolog 23 (APUM-23) (AtPUM23) nucleolus [GO:0005730]; RNA binding [GO:0003723]; auxin homeostasis [GO:0010252]; regulation of translation [GO:0006417]; response to glucose [GO:0009749]; response to sucrose [GO:0009744] locus:2193982; AT1G72320 Pumilio Os10g0390100 protein (Pumilio-family RNA binding repeat containing protein, expressed) (cDNA clone:J013105N21, full insert sequence) Q94HC1 Q94HC1_ORYSJ Os10g0390100 LOC_Os10g25110 Os10g0390100 OSJNBb0061I18.14 OSNPB_100390100 ENOG411DWDR MRS2-10,MRS2-1 Q9SAH0,Q9S9N4 MRS2A_ARATH,MRS21_ARATH Magnesium transporter MRS2-10 (Magnesium Transporter 1) (AtMGT1),Magnesium transporter MRS2-1 (Magnesium Transporter 2) (AtMGT2) Homozygote has a WT phenotype even under conditions of Mg+ stress. FUNCTION: High-affinity magnesium transporter that mediates the influx of magnesium. Involved in tolerance to Aluminum. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:17101715}.,FUNCTION: Magnesium transporter that may mediate the influx of magnesium. MISCELLANEOUS: Has the ability to complement mutants in Salmonella enterica and yeast lacking magnesium transport capability.,MISCELLANEOUS: Has the ability to complement a mutant in yeast lacking magnesium transport capability. R-ATH-5223345; 50463,50420 Magnesium transporter MRS2-10 (Magnesium Transporter 1) (AtMGT1),Magnesium transporter MRS2-1 (Magnesium Transporter 2) (AtMGT2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095],integral component of membrane [GO:0016021]; vacuole [GO:0005773]; magnesium ion transmembrane transporter activity [GO:0015095] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19966073}.,TISSUE SPECIFICITY: Expressed in the whole plant except stems. {ECO:0000269|PubMed:11115130, ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19966073}. locus:2025767;,locus:2200542; AT1G80900,AT1G16010 magnesium transporter Magnesium transporter MRS2-B Q67UQ7 MRS2B_ORYSJ MRS2-B Os06g0650800 LOC_Os06g44150 P0453H04.31 FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}. ENOG411DWDQ RF4,RF298 Q9ZVT8,Q0WPJ7,A0A1P8B7R8,A0A1P8B7Q9,A0A1P8B7R5 RF4_ARATH,RF298_ARATH,A0A1P8B7R8_ARATH,A0A1P8B7Q9_ARATH,A0A1P8B7R5_ARATH Putative E3 ubiquitin-protein ligase RF4 (EC 2.3.2.27) (RING finger protein 4) (RING-type E3 ubiquitin transferase RF4),Putative E3 ubiquitin-protein ligase RF298 (EC 2.3.2.27) (RING finger protein 298) (RING-type E3 ubiquitin transferase RF298),RING/U-box superfamily protein PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 91537,90159,71247,75967,80303 Putative E3 ubiquitin-protein ligase RF4 (EC 2.3.2.27) (RING finger protein 4) (RING-type E3 ubiquitin transferase RF4),Putative E3 ubiquitin-protein ligase RF298 (EC 2.3.2.27) (RING finger protein 298) (RING-type E3 ubiquitin transferase RF298),RING/U-box superfamily protein cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:6530298128;,locus:2139310; AT1G03365,AT4G03000 E3 ubiquitin-protein ligase Os05g0141500 protein (cDNA clone:J033133F19, full insert sequence),Os05g0141500 protein (Fragment) Q75KG8,A0A0P0WI16 Q75KG8_ORYSJ,A0A0P0WI16_ORYSJ Os05g0141500 OJ1489_G03.8 OSNPB_050141500,Os05g0141500 OSNPB_050141500 ENOG411DWDP HISN8 Q9C5U8 HIS8_ARATH Histidinol dehydrogenase, chloroplastic (HDH) (EC 1.1.1.23) (Protein HISTIDINE BIOSYNTHESIS 8) Null: Complete male gametophyte defective; Female gametophyte defective; Knockdown: Male and female gametophyte defective-S. McCormick-2009 FUNCTION: Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine. {ECO:0000250}. PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 9/9. Biosynthesis of secondary metabolites (01110),Histidine metabolism (00340),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 1.1.1.23 50323 Histidinol dehydrogenase, chloroplastic (HDH) (EC 1.1.1.23) (Protein HISTIDINE BIOSYNTHESIS 8) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; histidinol dehydrogenase activity [GO:0004399]; NAD binding [GO:0051287]; zinc ion binding [GO:0008270]; histidine biosynthetic process [GO:0000105]; pollen development [GO:0009555]; response to UV [GO:0009411] locus:2163946; AT5G63890 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (By similarity) Histidinol dehydrogenase, chloroplastic (HDH) (EC 1.1.1.23),Os01g0232700 protein (Fragment) Q5NAY4,A0A0P0V0M7 HISX_ORYSJ,A0A0P0V0M7_ORYSJ HDH Os01g0232700 LOC_Os01g13190 OsJ_01002 P0702F03.3,Os01g0232700 OSNPB_010232700 FUNCTION: Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine. {ECO:0000250}. ENOG411DWDW Q3ECH5 PP107_ARATH Pentatricopeptide repeat-containing protein At1g66345, mitochondrial 62332 Pentatricopeptide repeat-containing protein At1g66345, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:1005716687; AT1G66345 Pentatricopeptide repeat-containing protein Os01g0170700 protein (cDNA clone:J033032N01, full insert sequence),Os01g0170800 protein (Fragment),Os01g0170750 protein Q5VQM5,A0A0N7KCE8,A0A0P0UYT0 Q5VQM5_ORYSJ,A0A0N7KCE8_ORYSJ,A0A0P0UYT0_ORYSJ Os01g0170700 OSNPB_010170700 P0583G08.14,Os01g0170800 OSNPB_010170800,Os01g0170750 OSNPB_010170750 ENOG411DWDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 31 (OsMADS31) Q84NC2 MAD31_ORYSJ MADS31 Os04g0614100 LOC_Os04g52410 FUNCTION: Probable transcription factor. ENOG411DWDU Q9T0D6,A0A1P8B5Z8 PP306_ARATH,A0A1P8B5Z8_ARATH Pentatricopeptide repeat-containing protein At4g11690,Pentatricopeptide repeat (PPR-like) superfamily protein 63786,60856 Pentatricopeptide repeat-containing protein At4g11690,Pentatricopeptide repeat (PPR-like) superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; response to abscisic acid [GO:0009737] locus:2139732; AT4G11690 Pentatricopeptide repeat-containing protein OSJNBa0060P14.6 protein (Os04g0464000 protein),Os05g0583950 protein,Os01g0841400 protein (Fragment) Q7XUS5,A0A0N7KLB5,A0A0P0VA99 Q7XUS5_ORYSJ,A0A0N7KLB5_ORYSJ,A0A0P0VA99_ORYSJ Os04g0464000 OsJ_15086 OSJNBa0060P14.6 OSNPB_040464000,Os05g0583950 OSNPB_050583950,Os01g0841400 OSNPB_010841400 ENOG411DWDT F4IIC2 F4IIC2_ARATH F-box/LRR protein 84663 F-box/LRR protein locus:2051542; AT2G06040 LRR Os08g0459100 protein Q6ZBZ9 Q6ZBZ9_ORYSJ Os08g0459100 Os08g0459100 OSNPB_080459100 P0493A04.31 ENOG411DWDZ Q8H1F7 Q8H1F7_ARATH Amino acid kinase family protein (Uncharacterized protein At1g26640) FUNCTION: Catalyzes the formation of isopentenyl diphosphate (IPP), the universal five-carbon isoprenoid building block of all natural isoprenoids (PubMed:24327557, PubMed:26216978). Acts in parallel with the mevalonate (MVA) pathway and plays an important role in regulating the formation of both MVA and methylerythritol phosphate (MEP) pathway-derived terpenoid compounds by controlling the ratio of isopentenyl phosphate (IP) and dimethylallyl phosphate (DMAP) to isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Controls the levels of IP and DMAP that are competitive inhibitors of the farnesyl diphosphate synthase. Regulates the production of farnesyl diphosphate-derived terpenoids in the cytosol, and geranyl diphosphate-derived compounds in plastids (PubMed:26216978). {ECO:0000269|PubMed:24327557, ECO:0000269|PubMed:26216978}. 35676 Amino acid kinase family protein (Uncharacterized protein At1g26640) cytosol [GO:0005829]; ATP binding [GO:0005524]; isopentenyl phosphate kinase activity [GO:0102043]; kinase activity [GO:0016301]; terpenoid biosynthetic process [GO:0016114] locus:2200580; AT1G26640 Amino acid kinase family Os01g0764600 protein (cDNA clone:001-026-D03, full insert sequence),Os01g0764600 protein (Fragment) Q5JN10,A0A0P0V8K5 Q5JN10_ORYSJ,A0A0P0V8K5_ORYSJ P0403C05.12-1 Os01g0764600 OsJ_03563 OSNPB_010764600,Os01g0764600 OSNPB_010764600 ENOG411DWDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os01g0595900 protein (Ribosomal RNA apurinic site specific lyase-like) (cDNA clone:J023108J06, full insert sequence) Q5ZB59 Q5ZB59_ORYSJ Os01g0595900 Os01g0595900 B1103C09.24 OSNPB_010595900 P0451D05.37 ENOG411DWDX emb1967 F4JCV6 F4JCV6_ARATH Forkhead-associated (FHA) domain-containing protein Embryo defective; Transition-D. Meinke-2002 77593 Forkhead-associated (FHA) domain-containing protein locus:2096174; AT3G54350 FHA FHA domain containing protein, expressed (Os03g0800800 protein) (cDNA clone:J013020B01, full insert sequence),Os07g0190900 protein (cDNA clone:J033046D05, full insert sequence),Os07g0190900 protein (Fragment) Q851R6,Q6Z4I2,A0A0P0X411 Q851R6_ORYSJ,Q6Z4I2_ORYSJ,A0A0P0X411_ORYSJ OSJNBa0052F07.7 LOC_Os03g58640 Os03g0800800 OSNPB_030800800,Os07g0190900 OSJNBb0003E08.28 OSNPB_070190900,Os07g0190900 OSNPB_070190900 ENOG411DWDC Q9LR83 Q9LR83_ARATH F21B7.2 (HXXXD-type acyl-transferase family protein) (Transferase family protein) ARA:AT1G03390-MONOMER; 52086 F21B7.2 (HXXXD-type acyl-transferase family protein) (Transferase family protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2020838; AT1G03390 omega-hydroxypalmitate O-feruloyl transferase-like NA NA NA NA NA NA NA ENOG411DWDB SRS2 D1KF50 SRS2L_ARATH ATP-dependent DNA helicase SRS2-like protein At4g25120 (EC 3.6.4.12) (AtSRS2) FUNCTION: ATP-dependent 3'- to 5'-DNA helicase that could disrupt recombinogenic DNA intermediates and facilitate single strand annealing. Unwinds nicked and partial Holliday junctions in vitro. Anneals two single strands into a dsDNA molecule in vitro. {ECO:0000269|PubMed:19767619}. 3.6.4.12 129430 ATP-dependent DNA helicase SRS2-like protein At4g25120 (EC 3.6.4.12) (AtSRS2) nucleus [GO:0005634]; 3'-5' DNA helicase activity [GO:0043138]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; DNA recombination [GO:0006310]; DNA rewinding [GO:0036292] locus:2117303; AT4G25120 ATP-dependent DNA helicase Os07g0492100 protein (Putative ATP-dependent DNA helicase) Q6ZHK2 Q6ZHK2_ORYSJ P0038F10.105 Os07g0492100 OJ1218_C12.25 OSNPB_070492100 ENOG411DWDA SMO2-2,SMO2-1 Q8VWZ8,Q9ZW22 SMO22_ARATH,SMO21_ARATH Methylsterol monooxygenase 2-2 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1) (AtSMO1) (Sterol 4-alpha-methyl-oxidase 2-2),Methylsterol monooxygenase 2-1 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 2) (AtSMO2) (Sterol 4-alpha-methyl-oxidase 2-1) FUNCTION: Non-heme iron oxygenase involved in sterols biosynthesis. 24-ethylidenelophenol and 24-ethyllophenol are the preferred substrates. {ECO:0000269|PubMed:11707264}. MISCELLANEOUS: Requires a membrane-bound cytochrome b5 as an obligatory electron carrier from NAD(P)H to SMO. ARA:AT1G07420-MONOMER;MetaCyc:AT1G07420-MONOMER;,ARA:AT2G29390-MONOMER; R-ATH-191273; 1.14.13.72; 1.14.13.72 30927,31649 Methylsterol monooxygenase 2-2 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1) (AtSMO1) (Sterol 4-alpha-methyl-oxidase 2-2),Methylsterol monooxygenase 2-1 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 2) (AtSMO2) (Sterol 4-alpha-methyl-oxidase 2-1) chloroplast envelope [GO:0009941]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; C-4 methylsterol oxidase activity [GO:0000254]; iron ion binding [GO:0005506]; 4-alpha-methyl-delta7-sterol oxidation [GO:0080065]; embryo development ending in seed dormancy [GO:0009793]; sterol biosynthetic process [GO:0016126],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; C-4 methylsterol oxidase activity [GO:0000254]; iron ion binding [GO:0005506]; 4-alpha-methyl-delta7-sterol oxidation [GO:0080065]; sterol biosynthetic process [GO:0016126] locus:2024982;,locus:2043132; AT1G07420,AT2G29390 methylsterol Os07g0101500 protein (Putative sterol 4-alpha-methyl-oxidase),Os11g0707600 protein (Sterol desaturase family protein, expressed) (cDNA clone:006-304-H12, full insert sequence) (cDNA clone:J033114J20, full insert sequence) Q69L93,Q2QZ14 Q69L93_ORYSJ,Q2QZ14_ORYSJ Os07g0101500 B1026C12.22 OSNPB_070101500,Os11g0707600 LOC_Os11g48020 Os11g0707600 OsJ_34885 OSNPB_110707600 ENOG411DWDG SPL7 Q8S9G8,F4JZI4 SPL7_ARATH,F4JZI4_ARATH Squamosa promoter-binding-like protein 7,Squamosa promoter binding protein-like 7 DISRUPTION PHENOTYPE: Retarded growth and hypersensitivity to copper deprivation. {ECO:0000269|PubMed:24335506}. Hypersensitive to copper deficiency. Seedling growth is impaired when plants are grown in soils containing low copper levels (e.g. 0.1 micromolar). FUNCTION: Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. 89617,91550 Squamosa promoter-binding-like protein 7,Squamosa promoter binding protein-like 7 nuclear speck [GO:0016607]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; cellular response to copper ion starvation [GO:0035874]; regulation of developmental growth [GO:0048638]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; copper ion homeostasis [GO:0055070]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:24335506}. locus:2144965; AT5G18830 Squamosa promoter-binding-like protein Squamosa promoter-binding-like protein 9 Q6I576 SPL9_ORYSJ SPL9 Os05g0408200 LOC_Os05g33810 OSJNBb0014K18.5 P0040B10.14 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. ENOG411DWDF VPS26A,VPS26B Q9FJD0,Q9T091,F4JJR0 VP26A_ARATH,VP26B_ARATH,F4JJR0_ARATH Vacuolar protein sorting-associated protein 26A (Vesicle protein sorting 26A),Vacuolar protein sorting-associated protein 26B (Vesicle protein sorting 26B),Vacuolar protein sorting 26B FUNCTION: Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane. 35150,35204,32109 Vacuolar protein sorting-associated protein 26A (Vesicle protein sorting 26A),Vacuolar protein sorting-associated protein 26B (Vesicle protein sorting 26B),Vacuolar protein sorting 26B cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; multivesicular body [GO:0005771]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; retrograde transport, endosome to Golgi [GO:0042147],cytosol [GO:0005829]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; late endosome membrane [GO:0031902]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; retrograde transport, endosome to Golgi [GO:0042147] locus:2168636;,locus:2137787; AT5G53530,AT4G27690 Vacuolar protein sorting-associated protein Os11g0629200 protein (Vacuolar protein sorting 26, putative, expressed) (cDNA clone:J013002E16, full insert sequence),Os12g0500700 protein (Vacuolar protein sorting 26, putative, expressed) (cDNA clone:J033040F22, full insert sequence),Os03g0679100 protein Q2R0X0,Q2QQB3,Q0DPM9 Q2R0X0_ORYSJ,Q2QQB3_ORYSJ,Q0DPM9_ORYSJ LOC_Os11g41130 Os11g0629200 OsJ_34515 OSNPB_110629200,LOC_Os12g31640 Os12g0500700 OsJ_36186 OSNPB_120500700,Os03g0679100 Os03g0679100 OSNPB_030679100 ENOG411DWDE PRORP3,PRORP2,MUF9.6 F4JKB6,Q680B9,Q9FKK3,A0A1P8B0H9 PRRP3_ARATH,PRRP2_ARATH,Q9FKK3_ARATH,A0A1P8B0H9_ARATH Proteinaceous RNase P 3 (EC 3.1.26.5),Proteinaceous RNase P 2 (EC 3.1.26.5),Antiporter/ drug transporter (Gb|AAD24622.1),Proteinaceous RNase P 2 DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with PRORP2. Prorp2 and prorp3 double mutant is lethal. {ECO:0000269|PubMed:22549728}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with PRORP3. Prorp2 and prorp3 double mutant is lethal. {ECO:0000269|PubMed:22549728}. FUNCTION: Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). {ECO:0000269|PubMed:22549728}.,FUNCTION: Endonuclease RNase P responsible for the 5' maturation of tRNA precursors (PubMed:22549728, PubMed:26655022). Preferentially binds precursor tRNAs containing short 5' leaders and 3' trailers (PubMed:26655022). Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA) (PubMed:22549728). {ECO:0000269|PubMed:22549728, ECO:0000269|PubMed:26655022}. 3.1.26.5 64396,59228,17440,48038 Proteinaceous RNase P 3 (EC 3.1.26.5),Proteinaceous RNase P 2 (EC 3.1.26.5),Antiporter/ drug transporter (Gb|AAD24622.1),Proteinaceous RNase P 2 nucleus [GO:0005634]; ribonuclease P activity [GO:0004526]; mRNA processing [GO:0006397]; snoRNA processing [GO:0043144]; tRNA 5'-leader removal [GO:0001682],nucleus [GO:0005634]; ribonuclease P activity [GO:0004526]; tRNA 5'-leader removal [GO:0001682] locus:2141662;,locus:2059824;,locus:2175178; AT4G21900,AT2G16650,AT5G60430 pentatricopeptide repeat-containing protein At2g32230 mitochondrial-like Os01g0968000 protein A0A0N7KEH1 A0A0N7KEH1_ORYSJ Os01g0968000 OSNPB_010968000 ENOG411DWDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen Bifunctional nuclease 1 (OsBBD1) (EC 3.1.-.-) Q5N8J3 BBD1_ORYSJ BBD1 Os01g0702000 LOC_Os01g50622 OsJ_03158 P0047E11.30 P0421H07.6 FUNCTION: Bifunctional nuclease with both RNase and DNase activities. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen. {ECO:0000269|PubMed:20018603}. ENOG411DWDK IVD Q9SWG0 IVD_ARATH Isovaleryl-CoA dehydrogenase, mitochondrial (IVD) (EC 1.3.8.4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20501910}. Elevated levels of twelve different amino acids in seeds-R. Last-2009 FUNCTION: Involved in degradation of the branched-chain amino acids, phytol and lysine for the supply of carbon and electrons to the ETF/ETFQO complex during dark-induced sugar starvation. {ECO:0000269|PubMed:20501910}. PATHWAY: Amino-acid degradation; L-leucine degradation; (S)-3-hydroxy-3-methylglutaryl-CoA from 3-isovaleryl-CoA: step 1/3. ARA:AT3G45300-MONOMER; R-ATH-70895; 1.3.8.4; 1.3.8.4 44773 Isovaleryl-CoA dehydrogenase, mitochondrial (IVD) (EC 1.3.8.4) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; flavin adenine dinucleotide binding [GO:0050660]; isovaleryl-CoA dehydrogenase activity [GO:0008470]; branched-chain amino acid catabolic process [GO:0009083]; leucine catabolic process [GO:0006552] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. Not detected in roots. {ECO:0000269|PubMed:11231285}. locus:2078302; AT3G45300 Isovaleryl-CoA dehydrogenase Isovaleryl-CoA dehydrogenase, mitochondrial (IVD) (EC 1.3.8.4) Q75IM9 IVD_ORYSJ Os05g0125500 OsJ_16966 OSJNBb0079L11.8 P0683F12.2 ENOG411DWDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphoglycerate kinase NA NA NA NA NA NA NA ENOG411DWDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWWP domain Os08g0100500 protein (Putative PWWP domain protein),Os08g0100500 protein (PWWP domain protein-like) (cDNA clone:001-206-C02, full insert sequence) Q6Z1Z8,Q6Z1Z7 Q6Z1Z8_ORYSJ,Q6Z1Z7_ORYSJ B1147B12.7-1 Os08g0100500 OSNPB_080100500,B1147B12.7-2 Os08g0100500 OSNPB_080100500 ENOG411DWDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLC domain Os05g0511000 protein (cDNA clone:001-038-D12, full insert sequence) (cDNA clone:006-308-F07, full insert sequence) (cDNA clone:J013092A14, full insert sequence) Q6L537 Q6L537_ORYSJ Os05g0511000 OJ1005_B11.8 OSNPB_050511000 ENOG411DWDN Q6NLS8 PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial (EC 3.1.1.29) (M-PTH) (Mitochondrial CRS2-like protein) (Mitochondrial RNA splicing factor) FUNCTION: The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions (By similarity). {ECO:0000250}. ARA:AT5G19830-MONOMER; 3.1.1.29 24599 Peptidyl-tRNA hydrolase, mitochondrial (EC 3.1.1.29) (M-PTH) (Mitochondrial CRS2-like protein) (Mitochondrial RNA splicing factor) intracellular ribonucleoprotein complex [GO:0030529]; mitochondrion [GO:0005739]; aminoacyl-tRNA hydrolase activity [GO:0004045]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2183234; AT5G19830 Peptidyl-trna hydrolase CRS2-like protein, chloroplastic (Chloroplastic RNA splicing factor 2-like protein),Os05g0596700 protein (Fragment) Q10LI6,A0A0P0WRT1 CRS2L_ORYSJ,A0A0P0WRT1_ORYSJ Os03g0347800 LOC_Os03g22610,Os05g0596700 OSNPB_050596700 ENOG411DWDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0777800 protein A0A0P0VQA6 A0A0P0VQA6_ORYSJ Os02g0777800 OSNPB_020777800 ENOG411DR1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-like DNA-binding domain containing protein (Os03g0371800 protein),Os07g0111201 protein,Os03g0569700 protein Q10KS8,B9FV66,A0A0N7KHJ3 Q10KS8_ORYSJ,B9FV66_ORYSJ,A0A0N7KHJ3_ORYSJ Os03g0371800 LOC_Os03g25550 OSNPB_030371800,Os07g0111201 OsJ_22841 OSNPB_070111201,Os03g0569700 OSNPB_030569700 ENOG411DR1Q Q93YS7,A0A1P8B7C1 Q93YS7_ARATH,A0A1P8B7C1_ARATH Putative WD-repeat membrane protein (Transducin family protein / WD-40 repeat family protein),Transducin family protein / WD-40 repeat family protein R-ATH-6791226; 102217,89501 Putative WD-repeat membrane protein (Transducin family protein / WD-40 repeat family protein),Transducin family protein / WD-40 repeat family protein Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; rRNA processing [GO:0006364],small-subunit processome [GO:0032040]; catalytic activity [GO:0003824]; rRNA processing [GO:0006364] locus:2135393; AT4G04940 Utp21 specific WD40 associated putative domain Os06g0644600 protein A0A0P0WZ76 A0A0P0WZ76_ORYSJ Os06g0644600 OSNPB_060644600 ENOG411DR1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os05g0324300 protein,Os05g0381900 protein Q5W6T9,A0A0P0WLQ0 Q5W6T9_ORYSJ,A0A0P0WLQ0_ORYSJ Os05g0324300 Os05g0324300 OSNPB_050324300 P0018A03.10,Os05g0381900 OSNPB_050381900 ENOG411DR1R IQM3 Q9LFA4 IQM3_ARATH IQ domain-containing protein IQM3 (IQ motif-containing protein 3) FUNCTION: May be involved in biotic and abiotic stress responses. {ECO:0000250|UniProtKB:O82645}. 51155 IQ domain-containing protein IQM3 (IQ motif-containing protein 3) cytoplasm [GO:0005737]; nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, flowers and siliques, and at lower levels in stems. {ECO:0000269|Ref.4}. locus:2085161; AT3G52870 NA NA NA NA NA NA NA NA ENOG411DR1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 Methyltransferase, putative, expressed (Os11g0601600 protein) Q2R1K9 Q2R1K9_ORYSJ Os11g0601600 LOC_Os11g38860 Os11g0601600 OSNPB_110601600 ENOG411DR1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF303) Expressed protein (Os03g0857500 protein) (cDNA clone:001-101-D11, full insert sequence),Os03g0857500 protein (Fragment),Os06g0729725 protein Q10AC1,Q0DLL8,A0A0P0X1K5 Q10AC1_ORYSJ,Q0DLL8_ORYSJ,A0A0P0X1K5_ORYSJ Os03g0857500 LOC_Os03g64030 OSNPB_030857500,Os03g0857500 Os03g0857500 OSNPB_030857500,Os06g0729725 OSNPB_060729725 ENOG411DR1A CAO,CH1 Q9MBA1,A0A1P8ARR2 CAO_ARATH,A0A1P8ARR2_ARATH Chlorophyllide a oxygenase, chloroplastic (Chlorophyll a oxygenase) (EC 1.14.13.122) (Chlorophyll b synthase) (AtCAO),Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein Chlorophyll contents decreased by approximately 40% compared to the parental line (ch1-1/GFP-CAO).,Significant increase in the expression of the GFP-CAO transgene. Pale yellow-green plants-J. Brusslan-1999 FUNCTION: Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a. {ECO:0000269|PubMed:10758481}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT1G44446-MONOMER;MetaCyc:AT1G44446-MONOMER; 1.14.13.122; 1.14.13.122 60331,48720 Chlorophyllide a oxygenase, chloroplastic (Chlorophyll a oxygenase) (EC 1.14.13.122) (Chlorophyll b synthase) (AtCAO),Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid membrane [GO:0009535]; thylakoid membrane [GO:0042651]; 2 iron, 2 sulfur cluster binding [GO:0051537]; chlorophyllide a oxygenase [overall] activity [GO:0010277]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; chlorophyll biosynthetic process [GO:0015995],2 iron, 2 sulfur cluster binding [GO:0051537]; chlorophyllide a oxygenase [overall] activity [GO:0010277]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2823671; AT1G44446 chlorophyllide a oxygenase Chlorophyllide a oxygenase, chloroplastic (Chlorophyll a oxygenase) (EC 1.14.13.122) (Chlorophyll b synthase),Chlorophyll a oxygenase, putative, expressed (Os10g0567100 protein) (cDNA clone:001-114-D11, full insert sequence),Os10g0567400 protein (Fragment) Q8S7E1,Q336R0,A0A0P0XXY4 CAO_ORYSJ,Q336R0_ORYSJ,A0A0P0XXY4_ORYSJ CAO LLS1 Os10g0567400 LOC_Os10g41780 OsJ_32509 OSJNBa0057L21.2,LOC_Os10g41760 Os10g0567100 OsJ_32507 OSNPB_100567100,Os10g0567400 OSNPB_100567400 FUNCTION: Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a. ENOG411DR1C PI4KA1,PI4KA2,ATPI4K ALPHA Q9SXA1,Q9C680,A0A1P8AWA3 P4KA1_ARATH,P4KA2_ARATH,A0A1P8AWA3_ARATH Phosphatidylinositol 4-kinase alpha 1 (PI4-kinase alpha 1) (PtdIns-4-kinase alpha 1) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase alpha1) (AtPI4Kalpha1) (PI-4Kalpha1),Phosphatidylinositol 4-kinase alpha 2 (PI4-kinase alpha 2) (PtdIns-4-kinase alpha 2) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase alpha2) (AtPI4Kalpha2) (PI-4Kalpha2),Phosphatidylinositol 3-and 4-kinase family protein DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:22318862}. FUNCTION: Acts on phosphatidylinositol (PtdIns) in the first committed step in the production of the second messenger inositol-1,4,5,-trisphosphate. Can bind to phosphatidylinositol 4-monophosphate (PI-4-P or PtdIns4P), phosphatidylinositol 4,5-bisphosphate (PI-4,5-P2 or PtdIns4,5P2), and phosphatidic acid (PtdOH), but not to 3-phosphoinositides. May function upstream of the cold response phosphoinositide-dependent phospholipase C (PI-PLC) pathway. {ECO:0000269|PubMed:22318862, ECO:0000269|PubMed:9712908}.,FUNCTION: Acts on phosphatidylinositol (PtdIns) in the first committed step in the production of the second messenger inositol-1,4,5,-trisphosphate. {ECO:0000250}. ARA:AT1G49340-MONOMER;ARA:GQT-504-MONOMER;,ARA:AT1G51040-MONOMER; R-ATH-1483248;R-ATH-1660514; 2.7.1.67 224017,59290,223347 Phosphatidylinositol 4-kinase alpha 1 (PI4-kinase alpha 1) (PtdIns-4-kinase alpha 1) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase alpha1) (AtPI4Kalpha1) (PI-4Kalpha1),Phosphatidylinositol 4-kinase alpha 2 (PI4-kinase alpha 2) (PtdIns-4-kinase alpha 2) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase alpha2) (AtPI4Kalpha2) (PI-4Kalpha2),Phosphatidylinositol 3-and 4-kinase family protein perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 1-phosphatidylinositol 4-kinase activity [GO:0004430]; actin filament binding [GO:0051015]; phosphatidic acid binding [GO:0070300]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; phosphatidylinositol-4-phosphate binding [GO:0070273]; actin cytoskeleton organization [GO:0030036]; phosphatidylinositol-mediated signaling [GO:0048015]; protein phosphorylation [GO:0006468],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; 1-phosphatidylinositol 4-kinase activity [GO:0004430]; actin cytoskeleton organization [GO:0030036]; phosphatidylinositol-mediated signaling [GO:0048015],intracellular [GO:0005622]; kinase activity [GO:0016301]; phosphatidylinositol phosphorylation [GO:0046854]; phosphatidylinositol-mediated signaling [GO:0048015] TISSUE SPECIFICITY: Present in leaves and inflorescences. {ECO:0000269|PubMed:9712908}. locus:2010202;,locus:2026063; AT1G49340,AT1G51040 Phosphatidylinositol 4-kinase Os03g0711200 protein (Fragment) A0A0P0W249 A0A0P0W249_ORYSJ Os03g0711200 OSNPB_030711200 ENOG411EEQC Q940N3 Q940N3_ARATH AT4g17240/dl4655c (RING/U-box superfamily protein) 18304 AT4g17240/dl4655c (RING/U-box superfamily protein) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:505006488; AT4G17245 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411DR15 Q9M9M9,F4IZR4 NDUAC_ARATH,F4IZR4_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}.,FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000256|RuleBase:RU363103}. ARA:AT3G03100-MONOMER;MetaCyc:AT3G03100-MONOMER; 18317,18292 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; electron carrier activity [GO:0009055]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; response to cytokinin [GO:0009735]; response to oxidative stress [GO:0006979],mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; electron carrier activity [GO:0009055]; NADH dehydrogenase (ubiquinone) activity [GO:0008137] locus:2097765; AT3G03100 NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 Q7XBT1 Q7XBT1_ORYSJ Os10g0579300 LOC_Os10g42840 Os10g0579300 OsJ_32599 OSJNBa0056G17.13 OSNPB_100579300 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000256|RuleBase:RU363103}. ENOG411DR17 Q9FRS4 PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610 62720 Pentatricopeptide repeat-containing protein At1g08610 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2025580; AT1G08610 Pentatricopeptide repeat-containing protein Os10g0476900 protein (Fragment) A0A0P0XW80 A0A0P0XW80_ORYSJ Os10g0476900 OSNPB_100476900 ENOG411DX0P CRRSP11,CRRSP3 O22784,Q6NM73 CRR11_ARATH,CRRS3_ARATH Cysteine-rich repeat secretory protein 11 (Plasmodesmata-located protein 3) (PDLP3),Cysteine-rich repeat secretory protein 3 (Plasmodesmata-located protein 2) (PDLP2) DISRUPTION PHENOTYPE: Both crrsp3 and crrsp11, and crrsp56 and crrsp11 double mutants show altered protein diffusion (measured using GFP). In crrsp56, crrsp3 and crrsp11 triple mutant there is inhibition of GFLV 2BMP tubule formation. Virus cell-to-cell movement is negatively affected. There is a 22% reduction in mean surface area of infection foci by GFLV and an approximately 12 h delay in long distance movement in comparison to wild-type plants. There is also a systemic delay in Cauliflower mosaic virus (CaMV) spread. {ECO:0000269|PubMed:18215111, ECO:0000269|PubMed:20886105}.,DISRUPTION PHENOTYPE: Grows normally showing no detectable abnormalities in leaf or flower development under short or long day growth conditions. Crrsp3 and crrsp11 double mutant shows altered protein diffusion (measured using GFP). In crrsp56, crrsp3 and crrsp11 triple mutant there is inhibition of GFLV 2BMP tubule formation. Virus cell-to-cell movement is negatively affected. There is a 22% reduction in mean surface area of infection foci by GFLV and an approximately 12 h delay in long distance movement in comparison to wild-type plants. There is also a systemic delay in Cauliflower mosaic virus (CaMV) spread. {ECO:0000269|PubMed:18215111, ECO:0000269|PubMed:19704520, ECO:0000269|PubMed:20886105}. This mutant does not show any obvious abnormal growth or developmental phenotype.,The movement of GFP between cells is increased in this double mutant. FUNCTION: Modulates cell-to-cell trafficking. {ECO:0000250}. 32658,32764 Cysteine-rich repeat secretory protein 11 (Plasmodesmata-located protein 3) (PDLP3),Cysteine-rich repeat secretory protein 3 (Plasmodesmata-located protein 2) (PDLP2) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; plasmodesmata-mediated intercellular transport [GO:0010497]; transport of virus in multicellular host [GO:0046739] DEVELOPMENTAL STAGE: Expression in the epidermis of floral primordia changes through development from being weakly expressed in the youngest the floral organs, with possibly a stronger expression on the abaxial side (P1, P2 stage) to being relatively strongly expressed in both the adaxial and abaxial epidermis at later stages. {ECO:0000269|PubMed:19704520}. TISSUE SPECIFICITY: Highly expressed in inflorescence pedacel and shoot apex. Expressed in the outermost L1 layer of the shoot apical meristem and in the epidermis of bulging floral primordia. Within the L1, expression was restricted to the peripheral zone (at protein level). {ECO:0000269|PubMed:19704520}.,TISSUE SPECIFICITY: Highly expressed in inflorescence shoot apex. Uniformly expressed within the inflorescence meristem with the exception of a boundary zone between floral primordia and the meristem where the expression is weaker (at protein level). {ECO:0000269|PubMed:19704520}. locus:2051089;,locus:2018314; AT2G33330,AT1G04520 cysteine-rich repeat secretory protein Os03g0140500 protein Q0DVA3,A0A0P0VSR7 Q0DVA3_ORYSJ,A0A0P0VSR7_ORYSJ Os03g0140500 OSNPB_030140500 ENOG411DX0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor NA NA NA NA NA NA NA ENOG411DX0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) OSJNBa0086O06.13 protein (Os04g0589900 protein) (cDNA clone:J023048G11, full insert sequence),Os04g0589900 protein Q7XLZ6,A0A0P0WE44 Q7XLZ6_ORYSJ,A0A0P0WE44_ORYSJ Os04g0589900 OSJNBa0086O06.13 OSNPB_040589900,Os04g0589900 OSNPB_040589900 ENOG411DX0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Os07g0659900 protein (cDNA clone:001-030-D09, full insert sequence) Q8H5B5 Q8H5B5_ORYSJ OJ1477_F01.128 P0496C02.113 Os07g0659900 OSNPB_070659900 ENOG411DX0B Q9SL64,A0A1P8B762,A0A1P8B6J1,A0A1P8B3Z8,F4IUF5,F4JNI7,F4JNI8 Q9SL64_ARATH,A0A1P8B762_ARATH,A0A1P8B6J1_ARATH,A0A1P8B3Z8_ARATH,F4IUF5_ARATH,F4JNI7_ARATH,F4JNI8_ARATH NEP-interacting protein, putative (DUF239) (Uncharacterized protein At2g20170),Carboxyl-terminal peptidase,NEP-interacting protein, putative (DUF239) 45440,34446,44844,45155,43489,45506,44293 NEP-interacting protein, putative (DUF239) (Uncharacterized protein At2g20170),Carboxyl-terminal peptidase,NEP-interacting protein, putative (DUF239) locus:2061704;,locus:2117904;,locus:2117919; AT2G20170,AT4G23370,AT4G23380 Domain of unknown function (DUF239) Os11g0215600 protein,Os11g0284600 protein A0A0P0Y005,A0A0P0Y151 A0A0P0Y005_ORYSJ,A0A0P0Y151_ORYSJ Os11g0215600 OSNPB_110215600,Os11g0284600 OSNPB_110284600 ENOG411DX0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os06g0542100 protein (Fragment) Q0DBQ3 Q0DBQ3_ORYSJ Os06g0542100 Os06g0542100 OSNPB_060542100 ENOG411DX0J MDC12.4 Q67ZB6 Q67ZB6_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At5g63080) (mRNA, clone: RAFL23-07-N07) 54358 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At5g63080) (mRNA, clone: RAFL23-07-N07) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; histone demethylase activity (H3-R2 specific) [GO:0033746]; histone demethylase activity (H4-R3 specific) [GO:0033749]; histone H4-R3 methylation [GO:0043985]; positive regulation of seed germination [GO:0010030] locus:2161967; AT5G63080 (jmjC) domain-containing protein Os01g0546900 protein (Fragment) A0A0P0V3U4 A0A0P0V3U4_ORYSJ Os01g0546900 OSNPB_010546900 ENOG411DX0M Q93V88 P2C62_ARATH Probable protein phosphatase 2C 62 (AtPP2C62) (EC 3.1.3.16) 3.1.3.16 78924 Probable protein phosphatase 2C 62 (AtPP2C62) (EC 3.1.3.16) chloroplast [GO:0009507]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721] locus:2119246; AT4G33500 phosphatase 2C Probable protein phosphatase 2C 71 (OsPP2C71) (EC 3.1.3.16),Probable protein phosphatase 2C BIPP2C1 (EC 3.1.3.16) (BTH-induced protein phosphatase 2C 1) (OsBIPP2C1) Q339D2,Q10QL5 P2C71_ORYSJ,BIP2C_ORYSJ Os10g0370000 LOC_Os10g22460 OJ1003C07.6 OsJ_030057 OsJ_31268,BIPP2C1 Os03g0192500 LOC_Os03g09220 OsJ_09738 FUNCTION: May play a role in responses to biotic and abiotic stresses. {ECO:0000250}. ENOG411DX01 Q0WVZ7,Q8LCY8,A0A1P8BHB9,A0A1P8BHD0 Q0WVZ7_ARATH,Q8LCY8_ARATH,A0A1P8BHB9_ARATH,A0A1P8BHD0_ARATH 24 kDa vacuolar protein-like (Zn-dependent exopeptidases superfamily protein),Zn-dependent exopeptidases superfamily protein 100094,33542,77886,30230 24 kDa vacuolar protein-like (Zn-dependent exopeptidases superfamily protein),Zn-dependent exopeptidases superfamily protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2180494; AT5G20660 Peptidase family M28 Os04g0519900 protein (Fragment),Os04g0519925 protein Q0JBP2,A0A0P0WCM5 Q0JBP2_ORYSJ,A0A0P0WCM5_ORYSJ Os04g0519900 Os04g0519900 OSNPB_040519900,Os04g0519925 OSNPB_040519925 ENOG411DX03 F4IUX9,A0A1I9LNZ8,F4JF82,A0A1I9LNZ9,F4IUX8 F4IUX9_ARATH,A0A1I9LNZ8_ARATH,F4JF82_ARATH,A0A1I9LNZ9_ARATH,F4IUX8_ARATH Ypt/Rab-GAP domain of gyp1p superfamily protein 87201,84746,91754,80949,84616 Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338],cytosol [GO:0005829]; endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2056083;,locus:2097213; AT2G39280,AT3G55020 RabGAP TBC domain-containing protein Os05g0465100 protein (cDNA clone:J013043G04, full insert sequence),Os01g0835000 protein Q6I5K0,A0A0P0VA26 Q6I5K0_ORYSJ,A0A0P0VA26_ORYSJ Os05g0465100 OsJ_18844 OSJNBa0009E21.5 OSNPB_050465100,Os01g0835000 OSNPB_010835000 ENOG411DX09 Q8RWI7,F4IXC9 Q8RWI7_ARATH,F4IXC9_ARATH NHL domain-containing protein (Uncharacterized protein At3g14860),NHL domain-containing protein 54827,54956 NHL domain-containing protein (Uncharacterized protein At3g14860),NHL domain-containing protein locus:2099357; AT3G14860 NHL repeat-containing protein NHL repeat-containing protein (Os02g0234200 protein) (Putative NHL repeat-containing protein) Q6EUK9 Q6EUK9_ORYSJ FUWA Os02g0234200 OJ1145_E05.2 OsJ_06002 OSNPB_020234200 ENOG411EC1X ABCA8 Q8LPK0,A0A1I9LRE2,A0A1I9LRE1 AB8A_ARATH,A0A1I9LRE2_ARATH,A0A1I9LRE1_ARATH ABC transporter A family member 8 (ABC transporter ABCA.8) (AtABCA8) (ABC2 homolog 7),ABC2 homolog 7 ARA:AT3G47790-MONOMER; R-ATH-1369062;R-ATH-382556; 101337,75043,88225 ABC transporter A family member 8 (ABC transporter ABCA.8) (AtABCA8) (ABC2 homolog 7),ABC2 homolog 7 integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; lipid transport [GO:0006869],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] locus:2100337; AT3G47790 ABC transporter NA NA NA NA NA NA NA ENOG411E54W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Snf7 Os07g0490700 protein (cDNA clone:002-150-D10, full insert sequence) Q7XHQ7 Q7XHQ7_ORYSJ Os07g0490700 Os07g0490700 OJ1218_C12.1 OSNPB_070490700 P0477A12.39 ENOG411E54U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family 17.8 kDa heat shock protein (OsHsp17.8) Q0DY72 HS178_ORYSJ HSP17.8 Os02g0711300 LOC_Os02g48140 OJ1038_A06.24 OJ1311_H06.34 ENOG411E54P A_TM021B04.7 A0A1P8BA40,O04650,Q9CAW3 A0A1P8BA40_ARATH,O04650_ARATH,Q9CAW3_ARATH Frigida-like protein,A_TM021B04.7 protein (Frigida-like protein),Intracellular protein transporter (Uncharacterized protein T9J14.6) 129883,135830,26309 Frigida-like protein,A_TM021B04.7 protein (Frigida-like protein),Intracellular protein transporter (Uncharacterized protein T9J14.6) cytosol [GO:0005829] locus:2181241;,locus:2114865; AT5G27220,AT3G04990 Frigida-like protein NA NA NA NA NA NA NA ENOG411E54Q Q8LG56 Q8LG56_ARATH At1g05205 (Hexokinase-1 protein) 10676 At1g05205 (Hexokinase-1 protein) kinase activity [GO:0016301] locus:505006100; AT1G05205 NA Os06g0680900 protein (cDNA clone:J033023L23, full insert sequence) (cDNA clone:J033081L11, full insert sequence) Q653Y3 Q653Y3_ORYSJ P0547F09.8-1 Os06g0680900 P0003H08.37-1 OSNPB_060680900 ENOG411E54Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Embryo-specific protein 3 (ATS3) Os01g0172800 protein (cDNA clone:J013098J12, full insert sequence) Q94E65 Q94E65_ORYSJ Os01g0172800 OsJ_00562 OSJNBa0089K24.2 OSNPB_010172800 ENOG411E54G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kinesin light chain NA NA NA NA NA NA NA ENOG411E54D Q9SH27,A0A1P8ASH2 LOR4_ARATH,A0A1P8ASH2_ARATH Protein LURP-one-related 4,LURP-one-like protein (DUF567) FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 24752,18012 Protein LURP-one-related 4,LURP-one-like protein (DUF567) AT1G63410 LURP-one-related 4-like NA NA NA NA NA NA NA ENOG411E54B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger NA NA NA NA NA NA NA ENOG411E54A Q6NQG5 Q6NQG5_ARATH At1g49170 (Similar to serine/threonine kinase 9 gb|AAD28798.1) 13124 At1g49170 (Similar to serine/threonine kinase 9 gb|AAD28798.1) kinase activity [GO:0016301] locus:2028511; AT1G49170 ACR YggU family COG1872 containing protein Os04g0686300 protein (cDNA clone:J023044D05, full insert sequence) B7EHD8 B7EHD8_ORYSJ Os04g0686300 OsJ_16702 OSNPB_040686300 ENOG411E54N Q9ZUC4,O64594 Q9ZUC4_ARATH,O64594_ARATH At1g23710 (F5O8.26 protein) (Uncharacterized protein At1g23710) (Uncharacterized protein F5O8.26),At1g70420/F17O7_4 (DNA ligase-like protein, putative (DUF1645)) (F17O7.4) 33649,31022 At1g23710 (F5O8.26 protein) (Uncharacterized protein At1g23710) (Uncharacterized protein F5O8.26),At1g70420/F17O7_4 (DNA ligase-like protein, putative (DUF1645)) (F17O7.4) ligase activity [GO:0016874]; response to karrikin [GO:0080167] locus:2034893;,locus:2016124; AT1G23710,AT1G70420 Protein of unknown function (DUF1645) NA NA NA NA NA NA NA ENOG411E54M Q9SS98 OLEO5_ARATH Oleosin 5 ole4 seeds have slightly larger oil bodies than wild-type and germinate normally. FUNCTION: May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth (By similarity). {ECO:0000250}. 19755 Oleosin 5 integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915]; response to freezing [GO:0050826]; seed oilbody biogenesis [GO:0010344]; transport [GO:0006810] locus:2084223; AT3G01570 May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth Oleosin 18 kDa (OSE721) Q10EK7 OLEO2_ORYSJ OLE18 Os03g0699000 LOC_Os03g49190 OsJ_011734 OSJNBb0017F17.17 FUNCTION: May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. ENOG411E54K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family E3 ubiquitin-protein ligase (EC 2.3.2.27),Os11g0471000 protein Q9ARS6,A0A0P0Y227 Q9ARS6_ORYSJ,A0A0P0Y227_ORYSJ Os01g0123800 OsJ_00193 OSNPB_010123800 P0037C04.12 P0445D12.36,Os11g0471000 OSNPB_110471000 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411E546 TAF13 Q6NQH4 TAF13_ARATH Transcription initiation factor TFIID subunit 13 (TBP-associated factor 13) (AtTAF13) DISRUPTION PHENOTYPE: Embryo lethal when homozygote. {ECO:0000269|PubMed:23506837}. FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. May be involved in polycomb repressive complex 2 (PRC2) mediated repression. {ECO:0000269|PubMed:23506837}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 14254 Transcription initiation factor TFIID subunit 13 (TBP-associated factor 13) (AtTAF13) nucleus [GO:0005634]; plasma membrane [GO:0005886]; transcription factor TFIID complex [GO:0005669]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; transcription cofactor activity [GO:0003712]; embryo development ending in seed dormancy [GO:0009793]; endosperm development [GO:0009960]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; seed development [GO:0048316]; transcription from RNA polymerase II promoter [GO:0006366] DEVELOPMENTAL STAGE: Detected early after fertilization in the zygotic embryo and free endosperm nuclei. Expression continues in the embryo at the heart and torpedo stages, but is restricted to the chalazal nuclei in endosperm before cellularization. At maturity, expressed mainly in the embryo epidermis and in the vascular tissue. {ECO:0000269|PubMed:23506837}. TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2196040; AT1G02680 transcription initiation factor Os01g0338100 protein B9EW84 B9EW84_ORYSJ Os01g0338100 OsJ_01607 OSNPB_010338100 ENOG411E547 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411E544 B9DFM7,F4JIP3 B9DFM7_ARATH,F4JIP3_ARATH AT4G21215 protein (Transmembrane protein),Transmembrane protein 21407,21166 AT4G21215 protein (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:504955464; AT4G21215 NA NA NA NA NA NA NA NA ENOG411E545 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0158200 protein (cDNA clone:001-022-G04, full insert sequence) (cDNA clone:J033031C13, full insert sequence),Os08g0144400 protein (cDNA clone:J033115K23, full insert sequence),Os05g0158400 protein,Os05g0157600 protein,Os05g0161400 protein (cDNA clone:001-127-B06, full insert sequence),Os08g0146001 protein,Os05g0160600 protein (Fragment),Os08g0145600 protein (Fragment),Os08g0149000 protein,Os08g0144400 protein,Os05g0157500 protein Q75LZ0,Q7EYD8,Q5W728,B9FMK5,Q6ATB3,A0A0P0XBM0,A0A0N7KK71,A0A0P0XC12,A0A0P0XC41,A0A0P0XBW2,A0A0N7KK68 Q75LZ0_ORYSJ,Q7EYD8_ORYSJ,Q5W728_ORYSJ,B9FMK5_ORYSJ,Q6ATB3_ORYSJ,A0A0P0XBM0_ORYSJ,A0A0N7KK71_ORYSJ,A0A0P0XC12_ORYSJ,A0A0P0XC41_ORYSJ,A0A0P0XBW2_ORYSJ,A0A0N7KK68_ORYSJ Os05g0158200 Os05g0158200 OsJ_17196 OSNPB_050158200 P0676G05.20,P0665F09.120-1 P0571B09.106-1 Os08g0144400 OSNPB_080144400,Os05g0158400 Os05g0158400 OSJNBa0017J22.2 OSNPB_050158400,Os05g0157600 OsJ_17191 OSNPB_050157600,Os05g0161400 OsJ_17216 OSJNBa0034O12.16 OSNPB_050161400,Os08g0146001 OSNPB_080146001,Os05g0160600 OSNPB_050160600,Os08g0145600 OSNPB_080145600,Os08g0149000 OSNPB_080149000,Os08g0144400 OSNPB_080144400,Os05g0157500 OSNPB_050157500 ENOG411E542 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0516900 protein Q84JT9 Q84JT9_ORYSJ P0686C03.145 P0700D12.104 Os08g0516900 OSNPB_080516900 ENOG411E543 ATHX Q8LD49 TRXX_ARATH Thioredoxin X, chloroplastic (AtTrxx) Large rosette leaves-F. Cejudo-2010 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 19648 Thioredoxin X, chloroplastic (AtTrxx) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; enzyme activator activity [GO:0008047]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; positive regulation of catalytic activity [GO:0043085] TISSUE SPECIFICITY: Predominantly expressed in leaves. {ECO:0000269|PubMed:10580150}. locus:2011932; AT1G50320 thioredoxin x Thioredoxin X, chloroplastic (OsTrxx) (OsTrx16) Q7XKD0 TRXX_ORYSJ TRX-X Os04g0676100 LOC_Os04g57930 OSJNBa0064G10.1 FUNCTION: Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:16891402}. ENOG411E540 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os03g0764200 protein A0A0P0W3G1 A0A0P0W3G1_ORYSJ Os03g0764200 OSNPB_030764200 ENOG411E541 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q8GS22,Q8GS08 Q8GS22_ORYSJ,Q8GS08_ORYSJ P0552F09.104 B1056G08.121 Os07g0617100 OSNPB_070617100,P0552F09.112 B1056G08.129 Os07g0617500 OSNPB_070617500 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E548 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine proteinase inhibitor Cysteine proteinase inhibitor 1 (Oryzacystatin I) (OC-I) (Oryzacystatin-1) (OsCP1) (SPOC-I),Cysteine proteinase inhibitor (Fragment) P09229,A0A0P0V9F2 CYT1_ORYSJ,A0A0P0V9F2_ORYSJ Os01g0803200 LOC_Os01g58890 P0003D09.48 P0034E02.11,Os01g0803200 OSNPB_010803200 FUNCTION: There are two distinct cystatins in rice seeds (Oryzacystatin-1 and -2) with different specificities against cysteine proteinases. May be involved in the control of germination by inhibition of endogenous cysteine proteinases. May play a role in defense by inhibiting exogenous proteases such as those present in digestive tracks of insects and nematodes. {ECO:0000269|PubMed:1697595}. ENOG411E549 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II 10 kDa polypeptide Os08g0200300 protein (Putative photosystem II 10K protein) (cDNA clone:001-042-F10, full insert sequence) (cDNA clone:J023063I15, full insert sequence) Q6ZBV1 Q6ZBV1_ORYSJ Os08g0200300 OSNPB_080200300 P0556A11.19 ENOG411EM4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAF domain NA NA NA NA NA NA NA ENOG411EM4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein NA NA NA NA NA NA NA ENOG411EM4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM4H Q9LM78 Q9LM78_ARATH Calcium-binding EF hand family protein (F2D10.25) (Uncharacterized protein At1g20760) R-ATH-194840;R-ATH-8856825;R-ATH-8856828; 109818 Calcium-binding EF hand family protein (F2D10.25) (Uncharacterized protein At1g20760) plasma membrane [GO:0005886]; calcium ion binding [GO:0005509] locus:2030432; AT1G20760 Calcium-binding EF NA NA NA NA NA NA NA ENOG411EM4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM4F Q9ZVT9,A0A1P8AUR4 C2GR1_ARATH,A0A1P8AUR4_ARATH C2 and GRAM domain-containing protein At1g03370,C2 calcium/lipid-binding and GRAM domain containing protein 114205,89041 C2 and GRAM domain-containing protein At1g03370,C2 calcium/lipid-binding and GRAM domain containing protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2014510; AT1G03370 C2 and GRAM domain-containing protein Os06g0297800 protein (Fragment) A0A0P0WVN7,A0A0P0WW17 A0A0P0WVN7_ORYSJ,A0A0P0WW17_ORYSJ Os06g0297800 OSNPB_060297800 ENOG411EM4G F4HY32,F4HY33,A0A1P8AQ08,A0A1P8APZ6 F4HY32_ARATH,F4HY33_ARATH,A0A1P8AQ08_ARATH,A0A1P8APZ6_ARATH Calcium-binding EF hand family protein R-ATH-194840;R-ATH-8856825;R-ATH-8856828; 135396,131851,129451,132996 Calcium-binding EF hand family protein cytosol [GO:0005829]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509],calcium ion binding [GO:0005509] locus:2036937; AT1G21630 Calcium-binding EF hand Os06g0728600 protein A0A0P0X1C3 A0A0P0X1C3_ORYSJ Os06g0728600 OSNPB_060728600 ENOG411EM4D Q9FGS8 C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 115859 C2 and GRAM domain-containing protein At5g50170 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2157707; AT5G50170 C2 and GRAM domain-containing protein NA NA NA NA NA NA NA ENOG411EM4E BAGP1 Q8W4D4,A0A1I9LNR1 BAGP1_ARATH,A0A1I9LNR1_ARATH BAG-associated GRAM protein 1,C2 domain-containing protein / GRAM domain-containing protein DISRUPTION PHENOTYPE: Enhanced susceptibility to B.cinerea and permissive fungal growth. {ECO:0000269|PubMed:26739014}. FUNCTION: Involved in proteolytic processing of BAG6. {ECO:0000269|PubMed:26739014}. 66068,59347 BAG-associated GRAM protein 1,C2 domain-containing protein / GRAM domain-containing protein integral component of membrane [GO:0016021]; defense response to fungus [GO:0050832],integral component of membrane [GO:0016021] locus:2097578; AT3G59660 GRAM domain-containing protein C2 domain-containing protein-like (Os09g0516900 protein),Os09g0516900 protein (Fragment) Q69MT7,A0A0P0XQ63 Q69MT7_ORYSJ,A0A0P0XQ63_ORYSJ Os09g0516900 Os09g0516900 OSJNBb0034B12.20 OSNPB_090516900,Os09g0516900 OSNPB_090516900 ENOG411EM4B Q8GW20 Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic 59501 Uncharacterized protein At5g03900, chloroplastic chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrial matrix [GO:0005759]; plastid [GO:0009536]; 2 iron, 2 sulfur cluster binding [GO:0051537]; ferrous iron binding [GO:0008198]; iron-sulfur cluster assembly [GO:0016226]; protein maturation by iron-sulfur cluster transfer [GO:0097428] locus:2150560; AT5G03900 NA Os02g0533000 protein A0A0P0VK15 A0A0P0VK15_ORYSJ Os02g0533000 OSNPB_020533000 ENOG411EM4C VAD1 F4HVW5,A0A1P8AQ22,A0A1P8AQ01 VAD1_ARATH,A0A1P8AQ22_ARATH,A0A1P8AQ01_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic,GRAM domain family protein DISRUPTION PHENOTYPE: Lesion mimic mutant with a light conditional appearance of propagative hypersensitive response (HR)-like lesions along the vascular system, and associated with expression of defense genes, production of high levels of salicylic acid (SA) (PubMed:15269331). Increased resistance to virulent and avirulent strains of Pseudomonas syringae pv tomato (PubMed:15269331, PubMed:17720753). This necrosis symptoms are ethylene-dependent and associated with ethylene accumulation (PubMed:17720753). {ECO:0000269|PubMed:15269331, ECO:0000269|PubMed:17720753}. lesion mimic mutant; exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system. Chlorotic leaves; Resistant to bacterial infection-D. Roby-2004 FUNCTION: Involved in ethylene- and salicylic acid-dependent cell death control associated with cells in the vicinity of vascular bundles. {ECO:0000269|PubMed:15269331, ECO:0000269|PubMed:17720753}. 67702,53550,46676 Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic,GRAM domain family protein chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; defense response to bacterium [GO:0042742]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of programmed cell death [GO:0043069]; plant-type hypersensitive response [GO:0009626]; response to ethylene [GO:0009723]; response to salicylic acid [GO:0009751] locus:2205625; AT1G02120 GRAM domain NA NA NA NA NA NA NA ENOG411EM4A F4ICA1 F4ICA1_ARATH BED zinc finger and hAT dimerization domain-containing protein 78167 BED zinc finger and hAT dimerization domain-containing protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2027468; AT1G18560 ZnF_BED NA NA NA NA NA NA NA ENOG411EM4Z CKI1 O22267 CKI1_ARATH Histidine kinase CKI1 (EC 2.7.13.3) (Protein CYTOKININ-INDEPENDENT 1) DISRUPTION PHENOTYPE: Cannot be transmitted through the female germ line. Impaired megagametogenesis visible from the four-nucleate stage, with two normal nuclei and two degenerated nuclei, leading to female sterility. Normal response to cytokinins. {ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:12774227, ECO:0000269|PubMed:20363773}. Complete female gametophyte defective-B. Brzobohaty-2003 FUNCTION: Essential protein. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Required for the development of megagametophyte in female gametophyte (embryo sac) independently of cytokinin. Contributes to vascular bundle formation and secondary growth in a cytokinin-independent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Seems to influence and promote the cytokinin signaling pathway. {ECO:0000269|PubMed:10610126, ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:12774227, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:20363773, ECO:0000269|PubMed:8875940}. 2.7.13.3 125033 Histidine kinase CKI1 (EC 2.7.13.3) (Protein CYTOKININ-INDEPENDENT 1) integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; phosphorelay sensor kinase activity [GO:0000155]; protein histidine kinase activity [GO:0004673]; protein homodimerization activity [GO:0042803]; cytokinin-activated signaling pathway [GO:0009736]; embryo sac development [GO:0009553]; nucleoside metabolic process [GO:0009116]; phloem or xylem histogenesis [GO:0010087]; secondary growth [GO:0080117] DEVELOPMENTAL STAGE: Present at low levels in developing ovules. Within mature female gametophytes, high levels in the central cell nucleus and weak levels in the egg cell nucleus. In fertilized ovules, expressed in the endosperm nuclei during 2 days after pollination. {ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:12774227}. TISSUE SPECIFICITY: Expressed in vascular tissues of inflorescence stems and floral organs, especially in procambium cells, and in siliques. {ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:20363773}. locus:2061971; AT2G47430 Histidine kinase NA NA NA NA NA NA NA ENOG411EM4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response regulator NA NA NA NA NA NA NA ENOG411EM4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA His Kinase A (phospho-acceptor) domain Probable histidine kinase 2 (OsHK2) (EC 2.7.13.3),Os06g0183200 protein,Os06g0183450 protein Q5SML4,A0A0P0WTS3,A0A0P0WTD6 OHK2_ORYSJ,A0A0P0WTS3_ORYSJ,A0A0P0WTD6_ORYSJ HK2 OHK1 Os06g0183200 LOC_Os06g08450 OSJNBb0036B04.16,Os06g0183200 OSNPB_060183200,Os06g0183450 OSNPB_060183450 DISRUPTION PHENOTYPE: Sterility. {ECO:0000269|PubMed:16891544}. FUNCTION: Cytokinin receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. {ECO:0000250|UniProtKB:A1A698}. ENOG411EM4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EM4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EM4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA His Kinase A (phospho-acceptor) domain Probable histidine kinase 1 (OsHK1) (EC 2.7.13.3) A3BE68 OHK1_ORYSJ HK1 MHZ1 Os06g0654300 LOC_Os06g44410 OsJ_22203 DISRUPTION PHENOTYPE: Dwarf, chlorina and sterility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Cytokinin receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. {ECO:0000250|UniProtKB:A1A698}. ENOG411EM4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHASE NA NA NA NA NA NA NA ENOG411EM46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED Zinc finger BED domain-containing protein RICESLEEPER 1 (Transposase-like protein RICESLEEPER 1),Zinc finger BED domain-containing protein RICESLEEPER 3 (Transposase-like protein RICESLEEPER 3),Zinc finger BED domain-containing protein RICESLEEPER 4 (Transposase-like protein RICESLEEPER 4),Zinc finger BED domain-containing protein RICESLEEPER 2 (Transposase-like protein RICESLEEPER 2),Os05g0583100 protein (Fragment) B9FJG3,Q75HY5,Q0JMB2,Q6AVI0,Q0DFL5,A0A0P0WQE8 RSLE1_ORYSJ,RSLE3_ORYSJ,RSLE4_ORYSJ,RSLE2_ORYSJ,Q0DFL5_ORYSJ,A0A0P0WQE8_ORYSJ Os05g0239150 LOC_Os05g14940 OJ1122_B08 OsJ_17746,Os05g0583200 LOC_Os05g50640 OSJNBb0035N21.10,Os01g0518400 LOC_Os01g33410 B1003B09 OsJ_02008,Os03g0733400 LOC_Os03g52310 OsJ_12466 OSJNBa0027J18.23 OSJNBa0079G12.4,Os05g0583100 Os05g0583100 OSNPB_050583100,Os05g0583100 OSNPB_050583100 DISRUPTION PHENOTYPE: Reduced plant size and amount of seeds. {ECO:0000269|PubMed:23067104}. FUNCTION: Transposase-like protein that is essential for plant growth and development. May regulate global gene expression by recruiting other cellular factors. {ECO:0000269|PubMed:23067104}. ENOG411EM47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein NA NA NA NA NA NA NA ENOG411EM44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os05g0102300 protein Q5KQP4 Q5KQP4_ORYSJ Os05g0102300 OSNPB_050102300 P0036D10.15 ENOG411EM45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED Os01g0698300 protein (cDNA clone:J023105O09, full insert sequence),Os01g0698300 protein (Fragment) Q0JK40,A0A0P0V714 Q0JK40_ORYSJ,A0A0P0V714_ORYSJ Os01g0698300 Os01g0698300 OSNPB_010698300,Os01g0698300 OSNPB_010698300 ENOG411EM43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EM40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BED zinc finger Os01g0367800 protein A0A0P0V322 A0A0P0V322_ORYSJ Os01g0367800 OSNPB_010367800 ENOG411EIU9 Q9FYM2 Q9FYM2_ARATH F21J9.7 6888 F21J9.7 locus:4515102578; AT1G24405 NA NA NA NA NA NA NA NA ENOG411EIU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0202350 protein (Os11g0202500 protein),Os11g0202100 protein (Fragment) C7J8S4,A0A0P0XZZ5 C7J8S4_ORYSJ,A0A0P0XZZ5_ORYSJ Os11g0202500 Os11g0202350 OSNPB_110202350,Os11g0202100 OSNPB_110202100 ENOG411EIU1 CLE2 O49519 CLE2_ARATH CLAVATA3/ESR (CLE)-related protein 2 [Cleaved into: CLE2p] FUNCTION: Extracellular signal peptide that regulates cell fate. May act with CLV1 as a ligand-receptor pair in a signal transduction pathway, coordinating growth between adjacent meristematic regions. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:19525968}. 7829 CLAVATA3/ESR (CLE)-related protein 2 [Cleaved into: CLE2p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in roots and seedlings, and, to a lower extent, in apex. {ECO:0000269|PubMed:12602871}. locus:2124588; AT4G18510 clavata3 esr-related NA NA NA NA NA NA NA ENOG411EIU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EIU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ubiquitin-protein ligase HECT-domain-containing protein, putative, expressed (Os03g0683900 protein) (cDNA clone:002-131-H10, full insert sequence) Q10F26 Q10F26_ORYSJ LOC_Os03g47960 Os03g0683900 OSNPB_030683900 ENOG411EIU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIU7 PSY3 Q8S8P7,B3H674,A0A1P8AQE8 PSY3_ARATH,B3H674_ARATH,A0A1P8AQE8_ARATH Protein PSY3 [Cleaved into: Tyrosine-sulfated glycopeptide 3],Alternative NAD(P)H dehydrogenase FUNCTION: Promotes cellular proliferation and expansion. {ECO:0000250}. 7904,9724,7885 Protein PSY3 [Cleaved into: Tyrosine-sulfated glycopeptide 3],Alternative NAD(P)H dehydrogenase extracellular region [GO:0005576]; growth factor activity [GO:0008083] locus:505006278;,locus:4515102505; AT2G29995,AT1G07175 NA NA NA NA NA NA NA NA ENOG411EIU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0630550 protein,Os05g0488000 protein (cDNA clone:001-102-D03, full insert sequence) (cDNA clone:J023008B04, full insert sequence),Os04g0477900 protein (cDNA clone:006-210-H11, full insert sequence) Q2QLS2,Q6AVN5,Q0JCD5 Q2QLS2_ORYSJ,Q6AVN5_ORYSJ,Q0JCD5_ORYSJ Os12g0630550 LOC_Os12g43500 OSNPB_120630550,Os05g0488000 OJ1119_H02.7 OsJ_19001 OSNPB_050488000,Os04g0477900 Os04g0477900 OSNPB_040477900 ENOG411EIUZ Q9SJ79 Q9SJ79_ARATH At2g04800 (Uncharacterized protein At2g04800) 8938 At2g04800 (Uncharacterized protein At2g04800) locus:2049178; AT2G04800 at2g04800 (e NA NA NA NA NA NA NA ENOG411EIUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Oral-facial-digital syndrome 1 NA NA NA NA NA NA NA ENOG411EIUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Splicing factor 5-related RNA binding protein NA NA NA NA NA NA NA ENOG411EIUU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUT PEP1,PEP2 Q9LV87,Q9LV88 PEP1_ARATH,PEP2_ARATH Elicitor peptide 1,Elicitor peptide 2 FUNCTION: Elicitor of plant defense. Induces the production of plant defensin (PDF1.2) and of H(2)O(2). Promotes resistance to the root fungal pathogen P.irregulare. {ECO:0000269|PubMed:16785434}.,FUNCTION: Elicitor of plant defense. {ECO:0000250}. 10389,12343 Elicitor peptide 1,Elicitor peptide 2 innate immune response [GO:0045087]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],defense response, incompatible interaction [GO:0009814] locus:2177659;,locus:2177644; AT5G64900,AT5G64890 NA NA NA NA NA NA NA NA ENOG411EIUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EIUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIUA T2H3.15 O81421 O81421_ARATH AGAMOUS-like 51 (MADS-box protein AGL51) (T2H3.15) 22478 AGAMOUS-like 51 (MADS-box protein AGL51) (T2H3.15) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:1006230382; AT4G02235 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EIUC A8MSA3,A8MR43 A8MSA3_ARATH,A8MR43_ARATH Plant thionin family protein 13199,8914 Plant thionin family protein locus:4010714069;,locus:4010714071; AT5G63063,AT5G63085 NA NA NA NA NA NA NA NA ENOG411EIUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIUE MDF20.9 Q9FM73 Q9FM73_ARATH Transmembrane protein 17650 Transmembrane protein integral component of membrane [GO:0016021] locus:2162192; AT5G55650 NA NA NA NA NA NA NA NA ENOG411EIUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR-17a/AIG1-like protein NA NA NA NA NA NA NA ENOG411EIUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PHOsphatase NA NA NA NA NA NA NA ENOG411EIUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0418600 protein,Os08g0418400 protein,Os08g0418300 protein Q7EYC3,A0A0P0XGE6,A0A0P0XGA1 Q7EYC3_ORYSJ,A0A0P0XGE6_ORYSJ,A0A0P0XGA1_ORYSJ P0477F03.123 Os08g0418600 OsJ_27330 OSNPB_080418600,Os08g0418400 OSNPB_080418400,Os08g0418300 OSNPB_080418300 ENOG411E7UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase subunit H NA NA NA NA NA NA NA ENOG411E7UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0106600 protein Q657Y5 Q657Y5_ORYSJ Os01g0106600 OSNPB_010106600 P0005A05.21 ENOG411E7UX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA early nodulin Os06g0141600 protein (cDNA clone:006-203-H12, full insert sequence),Early nodulin (Os06g0142200 protein) (Putative early nodulin) (cDNA clone:J033147G13, full insert sequence),Os06g0142400 protein (Putative early nodulin) (cDNA, clone: J065127G01, full insert sequence),Os06g0142300 protein (Putative early nodulin),Os06g0141400 protein (Fragment),Os06g0141700 protein (Putative early nodulin) (cDNA clone:J033095D10, full insert sequence),Os06g0142200 protein (Fragment),Os06g0142350 protein Q0DEP8,O82787,Q9SNQ9,Q9SNR1,Q0DEP9,Q9SNR6,A0A0P0WSE5,A0A0P0WST6 Q0DEP8_ORYSJ,O82787_ORYSJ,Q9SNQ9_ORYSJ,Q9SNR1_ORYSJ,Q0DEP9_ORYSJ,Q9SNR6_ORYSJ,A0A0P0WSE5_ORYSJ,A0A0P0WST6_ORYSJ Os06g0141600 Os06g0141600 OSNPB_060141600,OsENOD93a P0535G04.15-1 Os06g0142200 OSNPB_060142200,Os06g0142400 OsJ_20084 OSNPB_060142400 P0535G04.19,Os06g0142300 Os06g0142300 OSNPB_060142300 P0535G04.16,Os06g0141400 Os06g0141400 OSNPB_060141400,Os06g0141700 Os06g0141700 OSNPB_060141700 P0535G04.10,Os06g0142200 OSNPB_060142200,Os06g0142350 OSNPB_060142350 ENOG411E7US NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein OSJNBa0011F23.6 protein (Os04g0658200 protein) Q8S3Q1 Q8S3Q1_ORYSJ 24K23.5 Os04g0658200 OsJ_16473 OSJNBa0011F23.6 OSNPB_040658200 ENOG411E7UR MRH10.17 Q9FNC0 Q9FNC0_ARATH Embryo sac development arrest protein (Gb|AAD10670.1) (Uncharacterized protein At5g44060) (Uncharacterized protein At5g44060/MRH10_17) 16384 Embryo sac development arrest protein (Gb|AAD10670.1) (Uncharacterized protein At5g44060) (Uncharacterized protein At5g44060/MRH10_17) seed development [GO:0048316] locus:2172487; AT5G44060 NA NA NA NA NA NA NA NA ENOG411E7UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os11g0168500 protein A0A0P0XZC3 A0A0P0XZC3_ORYSJ Os11g0168500 OSNPB_110168500 ENOG411E7UP Q8LG27 Q8LG27_ARATH At4g35905 (Trm112p-like protein) 8382 At4g35905 (Trm112p-like protein) locus:505006561; AT4G35905 Inherit from NOG: PIGY upstream reading frame NA NA NA NA NA NA NA ENOG411E7UW KRP7,ICK5 Q94CL9,A0A1P8ASS0,A0A1P8ASU8 KRP7_ARATH,A0A1P8ASS0_ARATH,A0A1P8ASU8_ARATH Cyclin-dependent kinase inhibitor 7 (Inhibitor/interactor of CDK protein 5) (KIP-related protein 7),Cyclin-dependent kinase inhibitor family protein FUNCTION: Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1. {ECO:0000269|PubMed:16376885}. 21965,19929,22582 Cyclin-dependent kinase inhibitor 7 (Inhibitor/interactor of CDK protein 5) (KIP-related protein 7),Cyclin-dependent kinase inhibitor family protein male germ cell nucleus [GO:0001673]; nucleoplasm [GO:0005654]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; cell cycle arrest [GO:0007050]; negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045736],nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; kinase activity [GO:0016301]; cell cycle arrest [GO:0007050] DEVELOPMENTAL STAGE: Present in uninucleate microspore and bicellular pollen. {ECO:0000269|PubMed:18948957}. TISSUE SPECIFICITY: Expressed in flowers, in developing pollen, and at lower levels in roots and leaves. {ECO:0000269|PubMed:11449057, ECO:0000269|PubMed:18948957}. locus:2012186; AT1G49620 Cyclin-dependent kinase inhibitor NA NA NA NA NA NA NA ENOG411E7UV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0104400 protein (cDNA clone:002-104-G04, full insert sequence) Q69U48 Q69U48_ORYSJ Os08g0104400 Os08g0104400 OSNPB_080104400 P0015C07.40 ENOG411E7UU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0414900 protein A0A0P0VYR8 A0A0P0VYR8_ORYSJ Os03g0414900 OSNPB_030414900 ENOG411E7UT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0610100 protein Q2QMC0 Q2QMC0_ORYSJ LOC_Os12g41640 Os12g0610100 OSNPB_120610100 ENOG411E7UJ Q6NN02 Y4445_ARATH Uncharacterized protein At4g14450, chloroplastic 14104 Uncharacterized protein At4g14450, chloroplastic chloroplast [GO:0009507] locus:2129750; AT4G14450 NA NA NA NA NA NA NA NA ENOG411E7UI SMR5 Q9LNX4 SMR5_ARATH Cyclin-dependent protein kinase inhibitor SMR5 (Protein SIAMESE-RELATED 5) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle (PubMed:26546445). Acts as a potent cell cycle inhibitor, regulating a hydroxyurea-dependent checkpoint in leaves (PubMed:24399300). Essential to activate a high-light-dependent cell cycle checkpoint (PubMed:24399300). {ECO:0000269|PubMed:24399300, ECO:0000269|PubMed:26546445}. 9212 Cyclin-dependent protein kinase inhibitor SMR5 (Protein SIAMESE-RELATED 5) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049]; cellular response to DNA damage stimulus [GO:0006974] TISSUE SPECIFICITY: Expressed in columella cells in the roots and in root meristems after induction. {ECO:0000269|PubMed:24399300}. locus:2024957; AT1G07500 NA Expressed protein (Os03g0822400 protein) (cDNA clone:J023044P22, full insert sequence) (cDNA clone:J033093F08, full insert sequence) Q10BD4 Q10BD4_ORYSJ LOC_Os03g60760 Os03g0822400 OSNPB_030822400 ENOG411E7UH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E7UN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os04g0471000 protein A0A0P0WB79 A0A0P0WB79_ORYSJ Os04g0471000 OSNPB_040471000 ENOG411E7UM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0446700 protein A0A0N7KQW4 A0A0N7KQW4_ORYSJ Os09g0446700 OSNPB_090446700 ENOG411E7UC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family Os12g0573600 protein A0A0P0YBL3 A0A0P0YBL3_ORYSJ Os12g0573600 OSNPB_120573600 ENOG411E7UB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7UA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0248100 protein Q6K3R2 Q6K3R2_ORYSJ Os02g0248100 OSJNBa0011N12.9 OSJNBa0090H18.36 OSNPB_020248100 ENOG411E7UF Q9CAS9 Q9CAS9_ARATH At1g73120 (F-box/RNI superfamily protein) (Uncharacterized protein At1g73120/T18K17_22) (Uncharacterized protein T18K17.22) 11851 At1g73120 (F-box/RNI superfamily protein) (Uncharacterized protein At1g73120/T18K17_22) (Uncharacterized protein T18K17.22) response to oxidative stress [GO:0006979] locus:2197289; AT1G73120 NA NA NA NA NA NA NA NA ENOG411E7UE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7UD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0709300 protein Q9ASF3 Q9ASF3_ORYSJ Os01g0709300 OsJ_03207 OSNPB_010709300 P0456F08.8 ENOG411E7U9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7U8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA respiratory burst oxidase NA NA NA NA NA NA NA ENOG411E7U3 F28O9.170 Q9M2L5,A8MQN7 Q9M2L5_ARATH,A8MQN7_ARATH Threonine-tRNA ligase 2 (Uncharacterized protein At3g57320) (Uncharacterized protein F28O9.170),Threonine-tRNA ligase 2 11802,15352 Threonine-tRNA ligase 2 (Uncharacterized protein At3g57320) (Uncharacterized protein F28O9.170),Threonine-tRNA ligase 2 ligase activity [GO:0016874] locus:2082513; AT3G57320 NA NA NA NA NA NA NA NA ENOG411E7U2 Q3E9Y5 Q3E9Y5_ARATH Uncharacterized protein 14190 Uncharacterized protein locus:2119727; AT4G19980 NA NA NA NA NA NA NA NA ENOG411E7U1 Q9LV56,Q9SII4 Q9LV56_ARATH,Q9SII4_ARATH Uncharacterized protein At3g24506 (Uncharacterized protein At3g24506/MOB24.5),Arginine/serine-rich-like splicing factor (At2g17240/T23A1.10) (Expressed protein) 17056,16188 Uncharacterized protein At3g24506 (Uncharacterized protein At3g24506/MOB24.5),Arginine/serine-rich-like splicing factor (At2g17240/T23A1.10) (Expressed protein) plastid [GO:0009536],chloroplast [GO:0009507] locus:505006370;,locus:2059647; AT3G24506,AT2G17240 NA Os02g0614200 protein (cDNA clone:001-022-B05, full insert sequence) Q6K5Y3 Q6K5Y3_ORYSJ Os02g0614200 Os02g0614200 OJ2055_H10.18 OsJ_07516 OSNPB_020614200 ENOG411E7U0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LGC1, putative (Os11g0523300 protein) Q2R3F8 Q2R3F8_ORYSJ Os11g0523300 LOC_Os11g32080 OSNPB_110523300 ENOG411E7U7 Q9C9V7 Q9C9V7_ARATH AT1G67910 protein (At1g67910) (Uncharacterized protein At1g67910) (Uncharacterized protein T23K23.24) 9940 AT1G67910 protein (At1g67910) (Uncharacterized protein At1g67910) (Uncharacterized protein T23K23.24) locus:2200276; AT1G67910 NA NA NA NA NA NA NA NA ENOG411E7U6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif NA NA NA NA NA NA NA ENOG411E7U5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0156100 protein (cDNA clone:001-112-H02, full insert sequence),Os08g0156000 protein (Os08g0156033 protein) (cDNA, clone: J100019J19, full insert sequence) Q0J7X8,Q6ZDA5 Q0J7X8_ORYSJ,Q6ZDA5_ORYSJ Os08g0156100 Os08g0156100 OsJ_26087 OSNPB_080156100,Os08g0156000 Os08g0156033 OsJ_26084 OSNPB_080156000 P0438H08.6 ENOG411E7U4 B3H692 B3H692_ARATH Transcription factor/transcription regulator 19996 Transcription factor/transcription regulator protein dimerization activity [GO:0046983] locus:4515102868; AT2G18969 Inherit from euNOG: Transcription factor transcription regulator NA NA NA NA NA NA NA ENOG411E85H F3C22_20 Q9LXK2 Q9LXK2_ARATH Transmembrane protein (Uncharacterized protein F3C22_20) 9344 Transmembrane protein (Uncharacterized protein F3C22_20) integral component of membrane [GO:0016021] locus:2083188; AT3G52620 NA NA NA NA NA NA NA NA ENOG411EEZH SPH7,SPH9,SPH10,SPH11,SPH8 B3H5E1,Q9FF19,B3H6H8,B3H4B5,B3H453,Q9ZQ02 SPH7_ARATH,SPH9_ARATH,SPH10_ARATH,SPH11_ARATH,SPH8_ARATH,Q9ZQ02_ARATH S-protein homolog 7,S-protein homolog 9,S-protein homolog 10,S-protein homolog 11,S-protein homolog 8,Plant self-incompatibility protein S1 family (Putative S1 self-incompatibility protein) 15543,15516,17172,16528,15306,15435 S-protein homolog 7,S-protein homolog 9,S-protein homolog 10,S-protein homolog 11,S-protein homolog 8,Plant self-incompatibility protein S1 family (Putative S1 self-incompatibility protein) extracellular region [GO:0005576]; rejection of self pollen [GO:0060320],extracellular region [GO:0005576]; pollen-pistil interaction [GO:0009875]; rejection of self pollen [GO:0060320] TISSUE SPECIFICITY: Mostly expressed in seedlings, stems, leaves and floral tissues, and, to a lower extent, in roots. {ECO:0000269|PubMed:10344198}. locus:4515103618;,locus:2177391;,locus:4515102888;,locus:4515102889;,locus:504954832;,locus:2051567; AT5G27238,AT5G38440,AT2G23142,AT2G23148,AT5G38435,AT2G06090 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EEZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0423600 protein A0A0P0WAD7 A0A0P0WAD7_ORYSJ Os04g0423600 OSNPB_040423600 ENOG411EEZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EEZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EEZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) Os10g0572900 protein (Fragment) A0A0N7KS92 A0A0N7KS92_ORYSJ Os10g0572900 OSNPB_100572900 ENOG411EEZA Q8GYV3 Q8GYV3_ARATH At5g46620 (Uncharacterized protein At5g46620/F10E10_10) 15992 At5g46620 (Uncharacterized protein At5g46620/F10E10_10) locus:2142300; AT5G46620 NA NA NA NA NA NA NA NA ENOG411EEZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative snoRNA binding domain Os03g0352300 protein (Fragment) A0A0P0VY77,A0A0P0VXG5 A0A0P0VY77_ORYSJ,A0A0P0VXG5_ORYSJ Os03g0352300 OSNPB_030352300 ENOG411EEZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: starch synthase activity Os03g0628200 protein,Os10g0207600 protein,Os04g0316850 protein,Os09g0290700 protein,Os04g0296034 protein,Os09g0395700 protein A0A0P0W0C9,A0A0P0XSJ6,A0A0P0W8N6,A0A0P0XLB2,A0A0P0W882,A0A0P0XLR9 A0A0P0W0C9_ORYSJ,A0A0P0XSJ6_ORYSJ,A0A0P0W8N6_ORYSJ,A0A0P0XLB2_ORYSJ,A0A0P0W882_ORYSJ,A0A0P0XLR9_ORYSJ Os03g0628200 OSNPB_030628200,Os10g0207600 OSNPB_100207600,Os04g0316850 OSNPB_040316850,Os09g0290700 OSNPB_090290700,Os04g0296034 OSNPB_040296034,Os09g0395700 OSNPB_090395700 ENOG411EEZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytidine and deoxycytidylate deaminase zinc-binding region NA NA NA NA NA NA NA ENOG411EEZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411EEZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0005 NA NA NA NA NA NA NA ENOG411EEZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling (By similarity) NA NA NA NA NA NA NA ENOG411EEZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN NA NA NA NA NA NA NA ENOG411EEZT AGL95,T07M07.9,AGL41 Q6DR69,Q9XEF1,Q6DR46 Q6DR69_ARATH,Q9XEF1_ARATH,Q6DR46_ARATH AGAMOUS-like 95,AGAMOUS-like 48 (Uncharacterized protein T07M07.9),AGAMOUS-like 41 29267,42414,21603 AGAMOUS-like 95,AGAMOUS-like 48 (Uncharacterized protein T07M07.9),AGAMOUS-like 41 DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700],nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2053608;,locus:2065092;,locus:2039553; AT2G15660,AT2G40210,AT2G26880 Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411EEZU bZIP5 Q29PT3 Q29PT3_ARATH At3g49760 (BZIP transcription factor AtbZip5) (Basic leucine-zipper 5) 18360 At3g49760 (BZIP transcription factor AtbZip5) (Basic leucine-zipper 5) transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2097315; AT3G49760 Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EEZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZ0 KRP2 Q9SCR2,A0A1I9LPR5 KRP2_ARATH,A0A1I9LPR5_ARATH Cyclin-dependent kinase inhibitor 2 (Inhibitor/interactor of CDK protein 2) (KIP-related protein 2),KIP-related protein 2 FUNCTION: Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. Regulates cell division which is crucial for plant growth, development and morphogenesis. May regulate early lateral root initiation by blocking the G1/S phase transition. Controls the mitosis-to-endocycle transition and the onset of the endoreduplication cycle during leaf development through inhibition of mitotic CDKA-1 kinase complexes. Specifically targets CDKA-1. {ECO:0000269|PubMed:11449057, ECO:0000269|PubMed:12368490, ECO:0000269|PubMed:15863515, ECO:0000269|PubMed:16376885}. MISCELLANEOUS: Treatment with auxin induces lateral root initiation. ICK2/KRP2 protein abundance is regulated post-transcriptionally through CDK phosphorylation and proteasomal degradation. 24037,21281 Cyclin-dependent kinase inhibitor 2 (Inhibitor/interactor of CDK protein 2) (KIP-related protein 2),KIP-related protein 2 nucleoplasm [GO:0005654]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; kinase inhibitor activity [GO:0019210]; cell cycle arrest [GO:0007050]; DNA endoreduplication [GO:0042023]; negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045736],nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; cell cycle arrest [GO:0007050] DEVELOPMENTAL STAGE: Highly expressed in root pericycle and cell suspension culture during cell cycle arrest. Expressed early in the G1 phase and then disappears. More abundant in endoreduplicating than in mitotically dividing tissues (at protein level). {ECO:0000269|PubMed:12000456, ECO:0000269|PubMed:12368490, ECO:0000269|PubMed:15863515}. locus:2101679; AT3G50630 Cyclin-dependent kinase inhibitor NA NA NA NA NA NA NA ENOG411EEZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZ2 T16N11.13 Q1PFV9,Q9M9D3,Q9M9D5,Q5BQ07,Q9M9D1,Q9LNZ6,Q1PFV8,Q9M9D6,A0A1P8AUN3 Q1PFV9_ARATH,Q9M9D3_ARATH,Q9M9D5_ARATH,Q5BQ07_ARATH,Q9M9D1_ARATH,Q9LNZ6_ARATH,Q1PFV8_ARATH,Q9M9D6_ARATH,A0A1P8AUN3_ARATH Transmembrane protein,E3 ubiquitin-protein ligase (T16N11.13 protein),T16N11.11 protein (Transmembrane protein),T16N11.15 protein (Transmembrane protein),F9C16.22 (Transmembrane protein),T16N11.10 protein (Transmembrane protein) 27405,20592,26320,29378,29113,25872,27556,24715,21206 Transmembrane protein,E3 ubiquitin-protein ligase (T16N11.13 protein),T16N11.11 protein (Transmembrane protein),T16N11.15 protein (Transmembrane protein),F9C16.22 (Transmembrane protein),T16N11.10 protein (Transmembrane protein) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2196613;,locus:2196553;,locus:2196568;,locus:2037164;,locus:2196558;,locus:2196598; AT1G15610,AT1G15630,AT1G15640,AT1G44010,AT1G15620,AT1G15600 NA NA NA NA NA NA NA NA ENOG411EEZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411E369 Q9FKA5 Y5957_ARATH Uncharacterized protein At5g39570 43526 Uncharacterized protein At5g39570 cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729] locus:2164855; AT5G39570 NA Os06g0232000 protein (Putative RNA-binding protein) (cDNA clone:001-206-F05, full insert sequence) (cDNA clone:J023110G05, full insert sequence),Os06g0232000 protein (Fragment) Q7XXQ8,A0A0P0WUS9 Q7XXQ8_ORYSJ,A0A0P0WUS9_ORYSJ P0479H10.4-1 Os06g0232000 OsJ_20701 OSNPB_060232000,Os06g0232000 OSNPB_060232000 ENOG411E362 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0421500 protein (cDNA clone:006-207-F04, full insert sequence),Os09g0421500 protein Q69P61,Q69P60 Q69P61_ORYSJ,Q69P60_ORYSJ OJ1740_D06.19-1 Os09g0421500 OsJ_29401 OSNPB_090421500,OJ1740_D06.19-2 Os09g0421500 OSNPB_090421500 ENOG411E360 Q93VA9 Q93VA9_ARATH AT5g25080/T11H3_90 (Sas10/Utp3/C1D family) 23748 AT5g25080/T11H3_90 (Sas10/Utp3/C1D family) nucleus [GO:0005634]; maturation of 5.8S rRNA [GO:0000460] locus:2179310; AT5G25080 Nuclear nucleic acid-binding protein Os08g0270200 protein Q6YX09 Q6YX09_ORYSJ Os08g0270200 OSJNBa0091D16.5 OSNPB_080270200 ENOG411E36J LBD18 O22131 LBD18_ARATH LOB domain-containing protein 18 (ASYMMETRIC LEAVES 2-like protein 20) (AS2-like protein 20) DISRUPTION PHENOTYPE: Reduced number of lateral roots. {ECO:0000269|PubMed:19717544}. Few lateral roots-J. Kim-2009 FUNCTION: Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. MISCELLANEOUS: Plants over-expressing LBD18 have a dwarf and bushy phenotype, with short petioles, curled downward leaves, ectopic shoots from the adaxial side of cotyledons, shrunken root tips and disorganized columella cells. {ECO:0000269|PubMed:19088331}. 27219 LOB domain-containing protein 18 (ASYMMETRIC LEAVES 2-like protein 20) (AS2-like protein 20) nucleus [GO:0005634]; lateral root formation [GO:0010311]; positive regulation of transcription, DNA-templated [GO:0045893]; xylem development [GO:0010089] DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116, PubMed:24484953). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:24484953}. locus:2050951; AT2G45420 lob domain-containing protein LOB domain protein 18, putative (Os03g0246900 protein),LOB domain protein (LOB domain protein 31, putative, expressed) (Os10g0162600 protein) Q10P52,Q7XGL4 Q10P52_ORYSJ,Q7XGL4_ORYSJ Os03g0246900 LOC_Os03g14270 Os03g0246900 OsJ_10128 OSNPB_030246900,CRLL2 LOC_Os10g07510 Os10g0162600 OSJNBb0042K08.9 OSNPB_100162600 ENOG411E36K HSP21.7 Q9FIT9 HS217_ARATH 21.7 kDa class VI heat shock protein (21.7 kDa heat shock protein) (AtHsp21.7) 21663 21.7 kDa class VI heat shock protein (21.7 kDa heat shock protein) (AtHsp21.7) cytoplasm [GO:0005737] locus:2172139; AT5G54660 kDa class VI heat shock 22.3 kDa class VI heat shock protein (22.3 kDa heat shock protein) (OsHsp22.3) Q6AUW3 HS223_ORYSJ HSP22.3 Os05g0500500 LOC_Os05g42120 OJ1057_B02.14 OsJ_19091 ENOG411E36H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os01g0868000 protein A0A0P0VAV5 A0A0P0VAV5_ORYSJ Os01g0868000 OSNPB_010868000 ENOG411E36M Q9SW35 Q9SW35_ARATH Glucuronoxylan 4-O-methyltransferase-like protein (DUF579) (Uncharacterized protein AT4g24910) (Uncharacterized protein F13M23.50) 35549 Glucuronoxylan 4-O-methyltransferase-like protein (DUF579) (Uncharacterized protein AT4g24910) (Uncharacterized protein F13M23.50) methyltransferase activity [GO:0008168]; xylan biosynthetic process [GO:0045492] locus:2117378; AT4G24910 Pfam:DUF579 NA NA NA NA NA NA NA ENOG411E36B CASP-like protein 5B2 Q945M8,Q9LZM5,A0A1I9LRS1 CSPLI_ARATH,CSPLU_ARATH,A0A1I9LRS1_ARATH CASP-like protein 5B2 (AtCASPL5B2),CASP-like protein 5B1 (AtCASPL5B1),CASP-like protein 16534,16535,15495 CASP-like protein 5B2 (AtCASPL5B2),CASP-like protein 5B1 (AtCASPL5B1),CASP-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] DEVELOPMENTAL STAGE: In 4-days-old seedlings, confined to the root meristematic zone and in young leaves. In roots of 10-days-old seedlings, also detected in lateral root primordia, and in the stele in proximity to the hypocotyl. {ECO:0000269|PubMed:24920445}. TISSUE SPECIFICITY: Expressed in the stele of the root. {ECO:0000269|PubMed:24920445}.,TISSUE SPECIFICITY: Expressed in leaves, exclusively in hair cells (e.g. differentiated trichomes and immature cells). {ECO:0000269|PubMed:24920445}. locus:2084445;,locus:2185103; AT3G53850,AT5G02060 CASP-like protein CASP-like protein 5B3 (OsCASPL5B3),CASP-like protein 5B1 (OsCASPL5B1) Q6K478,Q5N794 CSPLQ_ORYSJ,CSPLR_ORYSJ Os09g0249400 LOC_Os09g07480 OJ1695_A02.21 OsJ_28518,Os01g0847300 LOC_Os01g62850 P0005H10.13 P0446B05.41 ENOG411E36A Y14 F4I9J7 Y14_ARATH RNA-binding protein Y14 (AtY14) (RNA-binding protein 8A) FUNCTION: Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). The MAGO-Y14 heterodimer inhibits the ATPase activity of EIF4A3, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The MAGO-Y14 heterodimer interacts with the EJC key regulator PYM leading to EJC disassembly in the cytoplasm (By similarity). Can increase in vitro the expression from reporter constructs that contain leader introns required for the expression of different genes. In association with MAGO and PYM, participates in intron-mediated enhancement of gene expression (PubMed:21676911). The MAGO-Y14 heterodimer works synergistically with the NMD pathway to regulate male gametophyte development (PubMed:26867216). {ECO:0000250|UniProtKB:Q9Y5S9, ECO:0000269|PubMed:21676911, ECO:0000269|PubMed:26867216}. R-ATH-72163;R-ATH-975957; 22438 RNA-binding protein Y14 (AtY14) (RNA-binding protein 8A) cytoplasm [GO:0005737]; exon-exon junction complex [GO:0035145]; nuclear body [GO:0016604]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; positive regulation of gene expression [GO:0010628]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed in root and shoot meristems, cotyledons, vascular tissues of leaves, receptacle of flowers and siliques, and pollen grains. {ECO:0000269|PubMed:21676911}. locus:2033888; AT1G51510 RNA-binding protein RNA-binding protein Y14A (OsY14a) (RNA-binding protein 8A) B7FAL5 Y14A_ORYSJ Y14A RBM8 Os05g0140500 LOC_Os05g04850 OSJNBb0111O13.11 FUNCTION: Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). The MAGO-Y14 heterodimer inhibits the ATPase activity of EIF4A3, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The MAGO-Y14 heterodimer interacts with the EJC key regulator PYM leading to EJC disassembly in the cytoplasm (By similarity). EJC core heterodimers play essential roles in plant growth and development, and pollen and seed development (PubMed:25230811, PubMed:24820023). The MAGO-Y14 heterodimer selectively binds to the UDT1 (UNDEVELOPED TAPETUM 1) pre-mRNA transcript and regulates the splicing of UDT1, a key regulator in stamen development (PubMed:24820023). {ECO:0000250|UniProtKB:Q9Y5S9, ECO:0000269|PubMed:24820023, ECO:0000269|PubMed:25230811}. ENOG411E36F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E36D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os05g0125600 protein,Os05g0126000 protein Q0DL37,B9FGL2 Q0DL37_ORYSJ,B9FGL2_ORYSJ Os05g0125600 Os05g0125600 OSNPB_050125600,Os05g0126000 OsJ_16970 OSNPB_050126000 ENOG411E36Z F18B13.6 Q9SSD6 Q9SSD6_ARATH F18B13.6 protein (Structural molecules protein) (Uncharacterized protein At1g79975) R-ATH-6811440; 17501 F18B13.6 protein (Structural molecules protein) (Uncharacterized protein At1g79975) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021] AT1G79990 protein SYS1 homolog Os01g0593600 protein (cDNA clone:J023004I01, full insert sequence) B7EFT9 B7EFT9_ORYSJ Os01g0593600 OSNPB_010593600 ENOG411E36X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0244900 protein,Os07g0587000 protein (Fragment),Os09g0498700 protein,Os05g0106800 protein,Os01g0583800 protein,Os05g0106900 protein B9EUM9,A0A0N7KNS1,A0A0P0XPS2,A0A0N7KK06,A0A0N7KD81,A0A0P0WGZ7 B9EUM9_ORYSJ,A0A0N7KNS1_ORYSJ,A0A0P0XPS2_ORYSJ,A0A0N7KK06_ORYSJ,A0A0N7KD81_ORYSJ,A0A0P0WGZ7_ORYSJ Os01g0244900 OsJ_01080 OSNPB_010244900,Os07g0587000 OSNPB_070587000,Os09g0498700 OSNPB_090498700,Os05g0106800 OSNPB_050106800,Os01g0583800 OSNPB_010583800,Os05g0106900 OSNPB_050106900 ENOG411E36Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os12g0411500 protein Q2QT08 Q2QT08_ORYSJ Os12g0411500 LOC_Os12g22270 OsJ_35865 OSNPB_120411500 ENOG411E36R CML17 Q9LQN4 CML17_ARATH Probable calcium-binding protein CML17 (Calmodulin-like protein 17) FUNCTION: Potential calcium sensor. {ECO:0000250}. 18418 Probable calcium-binding protein CML17 (Calmodulin-like protein 17) calcium ion binding [GO:0005509] locus:2028331; AT1G32250 calcium-binding protein Probable calcium-binding protein CML11 (Calmodulin-like protein 11) Q9AWK2 CML11_ORYSJ CML11 Os01g0505600 LOC_Os01g32120 OsJ_001885 P0436D06.34 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E36S rps18 P56807 RR18_ARATH 30S ribosomal protein S18, chloroplastic 12060 30S ribosomal protein S18, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic small ribosomal subunit [GO:0022627]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954688; ATCG00650 Ribosomal protein S18 30S ribosomal protein S18, chloroplastic,Os01g0523401 protein P0C477,A0A0P0V3F2 RR18_ORYSJ,A0A0P0V3F2_ORYSJ rps18 LOC_Osp1g00570 Nip088,Os01g0523401 OSNPB_010523401 ENOG411E36Q Q0V865 FAFL_ARATH Protein FAF-like, chloroplastic 51446 Protein FAF-like, chloroplastic chloroplast [GO:0009507] locus:504956461; AT5G22090 protein FAF-like chloroplastic-like NA NA NA NA NA NA NA ENOG411E36V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family Os05g0355400 protein Q5W6Y8 Q5W6Y8_ORYSJ Os05g0355400 OSJNBa0036C12.9 OSNPB_050355400 ENOG411E36U NRPB4 O48890 NRPB4_ARATH DNA-directed RNA polymerase II subunit 4 (15.9 kDa subunit of RNA polymerase II) (DNA-directed RNA polymerase II subunit D) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 15932 DNA-directed RNA polymerase II subunit 4 (15.9 kDa subunit of RNA polymerase II) (DNA-directed RNA polymerase II subunit D) DNA-directed RNA polymerase II, core complex [GO:0005665]; P-body [GO:0000932]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleotide binding [GO:0000166]; translation initiation factor binding [GO:0031369]; mRNA export from nucleus in response to heat stress [GO:0031990]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]; positive regulation of translational initiation [GO:0045948]; recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [GO:0034402]; transcription from RNA polymerase II promoter [GO:0006366]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2178158; AT5G09920 DNA-directed RNA Polymerase Os02g0116900 protein (Putative 15.9 kDa subunit of RNA polymerase II) (cDNA clone:J023131N03, full insert sequence) Q6ZGM1 Q6ZGM1_ORYSJ Os02g0116900 Os02g0116900 OJ1442_E05.22 OsJ_05124 OSNPB_020116900 ENOG411EK62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acidPPc NA NA NA NA NA NA NA ENOG411EK61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S10p/S20e Chloroplast 30S ribosomal protein S10, putative, expressed (Os03g0196800 protein) (cDNA clone:001-017-A12, full insert sequence) (cDNA clone:006-202-F06, full insert sequence) Q10QH0 Q10QH0_ORYSJ LOC_Os03g10060 Os03g0196800 OsJ_09771 OSNPB_030196800 ENOG411EK6B NERD Q9SIV5,A0A1P8B1D0 C3H19_ARATH,A0A1P8B1D0_ARATH Zinc finger CCCH domain-containing protein 19 (AtC3H19) (Protein Needed for RDR2-independent DNA methylation),GW repeat-and PHD finger-containing protein NERD DISRUPTION PHENOTYPE: Silencing-deficience characterized by a lower siRNA accumulation and a transcriptional up-regulation of specific loci that correlates with a local loss of cytosine methylation on DNA and an increased methylation of histone H3 'Lys-4' (e.g. H3K4me2, H3K4me3) and 'Lys-36' (e.g. H3K36me3). {ECO:0000269|PubMed:22940247}. FUNCTION: Plays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}. 195051,193312 Zinc finger CCCH domain-containing protein 19 (AtC3H19) (Protein Needed for RDR2-independent DNA methylation),GW repeat-and PHD finger-containing protein NERD cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; DNA methylation on cytosine [GO:0032776]; gene silencing by RNA [GO:0031047]; regulation of chromatin silencing by small RNA [GO:0010964]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in seedlings, mostly in the vasculature and shoot apices of young seedlings. {ECO:0000269|PubMed:22940247}. locus:2827287; AT2G16485 DNA binding nucleic acid binding protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411EK6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plus3 NA NA NA NA NA NA NA ENOG411EK6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plus3 Os09g0530600 protein (Fragment),Os09g0530500 protein (Fragment) A0A0P0XPQ0,A0A0P0XQG2 A0A0P0XPQ0_ORYSJ,A0A0P0XQG2_ORYSJ Os09g0530600 OSNPB_090530600,Os09g0530500 OSNPB_090530500 ENOG411EK6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme Os06g0111600 protein (Fragment) A0A0P0WS15 A0A0P0WS15_ORYSJ Os06g0111600 OSNPB_060111600 ENOG411EK6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STI1 Os03g0131300 protein (Ubiquitin family protein, expressed) (cDNA clone:J023111G18, full insert sequence),Os10g0542200 protein (Putative ubiquitin protein) (Ubiquitin family protein, expressed),Os10g0542200 protein (Fragment),Os03g0131300 protein (Fragment) Q10S80,Q7XCL2,A0A0N7KS55,A0A0P0VSY4 Q10S80_ORYSJ,Q7XCL2_ORYSJ,A0A0N7KS55_ORYSJ,A0A0P0VSY4_ORYSJ Os03g0131300 LOC_Os03g03920 Os03g0131300 OsJ_09294 OSNPB_030131300,Os10g0542200 OSJNBb0015I11.23 LOC_Os10g39620 Os10g0542200 OSNPB_100542200,Os10g0542200 OSNPB_100542200,Os03g0131300 OSNPB_030131300 ENOG411EK6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DoH NA NA NA NA NA NA NA ENOG411EK6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0504600 protein (RNA recognition motif (RRM)-containing protein-like),Os08g0504600 protein Q6ZK85,A0A0P0XHQ4 Q6ZK85_ORYSJ,A0A0P0XHQ4_ORYSJ Os08g0504600 OJ1134_H03.9-1 OSNPB_080504600,Os08g0504600 OSNPB_080504600 ENOG411EK6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Electron transfer DM13 NA NA NA NA NA NA NA ENOG411EK6V T8P19.220 Q9SMM8 Q9SMM8_ARATH At3g48710 (DEK domain-containing chromatin associated protein) (Uncharacterized protein At3g48710) (Uncharacterized protein T8P19.220) 52067 At3g48710 (DEK domain-containing chromatin associated protein) (Uncharacterized protein At3g48710) (Uncharacterized protein T8P19.220) nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; chromatin remodeling [GO:0006338]; regulation of double-strand break repair [GO:2000779] locus:2114495; AT3G48710 DEK C terminal domain NA NA NA NA NA NA NA ENOG411EK6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEK C terminal domain NA NA NA NA NA NA NA ENOG411EK6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Guanylylate cyclase NA NA NA NA NA NA NA ENOG411EK6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: F-box domain containing protein expressed NA NA NA NA NA NA NA ENOG411EK6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEK C terminal domain Expressed protein (Os03g0596900 protein),Os03g0596900 protein,Os03g0596900 protein (Fragment) Q10H93,A0A0P0W000,A0A0P0W0I0 Q10H93_ORYSJ,A0A0P0W000_ORYSJ,A0A0P0W0I0_ORYSJ LOC_Os03g40010 Os03g0596900 OSNPB_030596900,Os03g0596900 OSNPB_030596900 ENOG411EK6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411DVN1 Q9C9A0,Q9LS15 Q9C9A0_ARATH,Q9LS15_ARATH At1g71080/F23N20_7 (RNA polymerase II transcription elongation factor) (Uncharacterized protein F23N20.7),Gb|AAF26010.1 (RNA polymerase II transcription elongation factor) 34831,31193 At1g71080/F23N20_7 (RNA polymerase II transcription elongation factor) (Uncharacterized protein F23N20.7),Gb|AAF26010.1 (RNA polymerase II transcription elongation factor) ELL-EAF complex [GO:0032783]; translation elongation factor activity [GO:0003746]; regulation of transcription, DNA-templated [GO:0006355] locus:2026361;,locus:2144431; AT1G71080,AT5G38050 RNA polymerase II transcription elongation factor Os01g0507500 protein (cDNA clone:001-022-E12, full insert sequence) Q8LJL5 Q8LJL5_ORYSJ Os01g0507500 Os01g0507500 OsJ_01951 OSJNBa0094H06.24 OSNPB_010507500 ENOG411DVN2 NDX1 Q8GWB2,A8MRP0,F4HWG6 NDX1_ARATH,A8MRP0_ARATH,F4HWG6_ARATH Protein NEOXANTHIN-DEFICIENT 1,Uncharacterized protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants lack neoxanthin. {ECO:0000269|PubMed:24506237}. FUNCTION: Required for neoxanthin biosynthesis. Probably not involved directly in the enzymatic conversion of violaxanthin to neoxanthin. Is necessary but not sufficient for neoxanthin synthesis. {ECO:0000269|PubMed:24506237}. 31169,23373,32073 Protein NEOXANTHIN-DEFICIENT 1,Uncharacterized protein xanthophyll biosynthetic process [GO:0016123] locus:2010539; AT1G28100 NA Protein NEOXANTHIN-DEFICIENT 1,Os10g0499600 protein Q0IWM5,A0A0P0XWB7 NDX1_ORYSJ,A0A0P0XWB7_ORYSJ NDX1 Os10g0499600 OSJNBa0078O01.15,Os10g0499600 OSNPB_100499600 FUNCTION: Required for neoxanthin biosynthesis. Probably not involved directly in the enzymatic conversion of violaxanthin to neoxanthin. Is necessary but not sufficient for neoxanthin synthesis. {ECO:0000250|UniProtKB:Q8GWB2}. ENOG411DVN3 MSG15.3 Q94KD2,Q93ZK1,A0A1P8BHC1,F4KEQ8 Q94KD2_ARATH,Q93ZK1_ARATH,A0A1P8BHC1_ARATH,F4KEQ8_ARATH AT5g51950/MSG15_3 (Glucose-methanol-choline (GMC) oxidoreductase family protein),AT3g56060/F18O21_20 (Glucose-methanol-choline (GMC) oxidoreductase family protein),Glucose-methanol-choline (GMC) oxidoreductase family protein ARA:AT5G51950-MONOMER;,ARA:AT3G56060-MONOMER; R-ATH-6798163; 64804,63357,64545,60632 AT5g51950/MSG15_3 (Glucose-methanol-choline (GMC) oxidoreductase family protein),AT3g56060/F18O21_20 (Glucose-methanol-choline (GMC) oxidoreductase family protein),Glucose-methanol-choline (GMC) oxidoreductase family protein flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2173068;,locus:2078441; AT5G51950,AT3G56060 glucose-methanol-choline (GMC) oxidoreductase family protein NA NA NA NA NA NA NA ENOG411DVN6 AP22.96,C7A10.830 Q94K11,O23227 Q94K11_ARATH,O23227_ARATH Alpha/beta-Hydrolases superfamily protein (At4g36530) (Uncharacterized protein unannotated coding sequence from BAC CIC7A10),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g36530) (Uncharacterized protein C7A10.830) 35777,41906 Alpha/beta-Hydrolases superfamily protein (At4g36530) (Uncharacterized protein unannotated coding sequence from BAC CIC7A10),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g36530) (Uncharacterized protein C7A10.830) hydrolase activity [GO:0016787],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; hydrolase activity [GO:0016787] locus:2115440; AT4G36530 Hydrolase alpha beta fold NA NA NA NA NA NA NA ENOG411DVN7 MHF15.12 Q9FNH2 Q9FNH2_ARATH Ribosomal protein S8e family protein (Uncharacterized protein At5g06360) 29755 Ribosomal protein S8e family protein (Uncharacterized protein At5g06360) nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; ribosome [GO:0005840]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470] locus:2164245; AT5G06360 Ribosome biogenesis protein NSA2 Os07g0673100 protein (Putative TGF(Transfoming growth factor) beta inducible nuclear protein TINP1) Q8H458 Q8H458_ORYSJ P0470D12.138 Os07g0673100 OSNPB_070673100 ENOG411DVN8 CEPR1 Q9FGL5 CEPR1_ARATH Receptor protein-tyrosine kinase CEPR1 (EC 2.7.10.1) (Protein C-TERMINALLY ENCODED PEPTIDE RECEPTOR 1) (Protein XYLEM INTERMIXED WITH PHLOEM 1) DISRUPTION PHENOTYPE: Defects in vascular organization and phloem differentiation in inflorescence stems, characterized by aberrant accumulation of highly lignified cells, typical of xylem or fiber cells, within the phloem, and phloem cells sometimes adjacent to xylem cells. Malformed vascular cells files, probably due to defects in oriented cell divisions or cell morphology, and leading to both phloem specification defects and disrupted xylem vessel formation. Short inflorescence stems and increased anthocyanin accumulation in leaves (PubMed:21853254). Reduced total lateral root density, due to a reduction in stage I and II lateral root primordia and, to a lower extent, to fewer emerged lateral roots. Impaired sensitivity to CEP5 with respect to root growth regulation (PubMed:27296247). Growth retardation accompanied with nitrogen (N)-deficiency symptoms. Slight enhanced lateral root elongation in simple mutant. The double mutant cepr1 cepr2 is insensitive to CEP1 in a root growth regulation and exhibit pleiotropic phenotype characterized by pale-green leaves and enhanced lateral root elongation. At adult stage, smaller rosette leaves and shorter floral stems, accompanied by anthocyanin accumulation. Down-regulation of genes involved in N uptake and assimilation pathways (e.g. NRT1.1, NRT2.1 and NRT3.1) leading to impaired nitrate uptake activity. Altered systemic induction of genes involved in N uptake and assimilation pathways in N-depletion conditions (PubMed:25324386). {ECO:0000269|PubMed:21853254, ECO:0000269|PubMed:25324386, ECO:0000269|PubMed:27296247}. FUNCTION: Receptor kinase involved in the perception of C-terminally encoded plant signaling peptide (CEP) and subsequent regulation of root and shoot development (PubMed:25324386). Required for xylem and phloem cell files morphology and organization, probably by preventing ectopic lignification in phloem cells (PubMed:21853254). Together with CEPR2, mediates systemic nitrogen (N)-demand signaling upon the perception of root-derived peptides (e.g. CEP1) via the up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). Regulates positively lateral root initiation and development; probably repressed by the signaling peptide CEP5 (PubMed:27296247). {ECO:0000269|PubMed:21853254, ECO:0000269|PubMed:25324386, ECO:0000269|PubMed:27296247}. 2.7.10.1 107278 Receptor protein-tyrosine kinase CEPR1 (EC 2.7.10.1) (Protein C-TERMINALLY ENCODED PEPTIDE RECEPTOR 1) (Protein XYLEM INTERMIXED WITH PHLOEM 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; peptide binding [GO:0042277]; peptide hormone binding [GO:0017046]; peptide receptor activity [GO:0001653]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; lateral root formation [GO:0010311]; nitrate import [GO:1902025]; positive regulation of lateral root development [GO:1901333]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of lateral root development [GO:2000023]; regulation of lignin biosynthetic process [GO:1901141]; regulation of root development [GO:2000280]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of shoot system development [GO:0048831]; xylem and phloem pattern formation [GO:0010051] DEVELOPMENTAL STAGE: Expressed in the vasculature, especially in phloem and procambium regions, from the mature embryo stage through the adult plant (PubMed:21853254). Excluded from early stages of lateral root development (PubMed:27296247). {ECO:0000269|PubMed:21853254, ECO:0000269|PubMed:27296247}. TISSUE SPECIFICITY: Expressed in the vasculature, especially in phloem and procambium regions, of stems, leaves, cotyledons, sepals, pedals, pedicels, hypocotyls and roots (in primary and lateral roots, but not in root tips) (PubMed:21853254, PubMed:25324386). Expressed in the root from the basal meristem onward. Present in the phloem pole pericycle and in the adjacent phloem (PubMed:27296247). {ECO:0000269|PubMed:21853254, ECO:0000269|PubMed:25324386, ECO:0000269|PubMed:27296247}. locus:2168907; AT5G49660 receptor-like protein kinase Leucine Rich Repeat family protein, expressed (Os12g0632900 protein) Q2QLQ5 Q2QLQ5_ORYSJ LOC_Os12g43660 Os12g0632900 OsJ_36978 OSNPB_120632900 ENOG411DVN9 Q9M0I1 Q9M0I1_ARATH Acyl-UDP-N-acetylglucosamine O-acyltransferase (Uncharacterized protein At4g28260) 58232 Acyl-UDP-N-acetylglucosamine O-acyltransferase (Uncharacterized protein At4g28260) transferase activity, transferring acyl groups [GO:0016746] locus:2123653; AT4G28260 NA Expressed protein (Os10g0500600 protein),Os10g0500600 protein (Fragment) Q337G4,A0A0P0XVW1 Q337G4_ORYSJ,A0A0P0XVW1_ORYSJ Os10g0500600 LOC_Os10g35710 Os10g0500600 OSNPB_100500600,Os10g0500600 OSNPB_100500600 ENOG411DVNB MLO11,MLO14 Q9FI00,Q94KB1 MLO11_ARATH,MLO14_ARATH MLO-like protein 11 (AtMlo11),MLO-like protein 14 (AtMlo14) Tight spiral-like root growth in response to touch-A. Jones-2009 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}. 66350,63923 MLO-like protein 11 (AtMlo11),MLO-like protein 14 (AtMlo14) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2164037;,locus:2200640; AT5G53760,AT1G26700 May be involved in modulation of pathogen defense and leaf cell death (By similarity) Os04g0680800 protein (Fragment) Q0J8Y5 Q0J8Y5_ORYSJ Os04g0680800 Os04g0680800 OSNPB_040680800 ENOG411DVNC ENDO1 Q9SXA6 ENDO1_ARATH Endonuclease 1 (AtENDO1) (EC 3.1.30.1) (Bifunctional nuclease I) (AtBFN1) (Deoxyribonuclease ENDO1) (Single-stranded-nucleate endonuclease ENDO1) FUNCTION: Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases during senescence. Endonuclease that recognizes and cleaves all types of mismatches with high efficiency, including heteroduplex double-stranded DNA. Maybe involved in programmed cell death (PCD) and senescence. {ECO:0000269|PubMed:10631260, ECO:0000269|PubMed:17651368, ECO:0000269|PubMed:18603613}. 3.1.30.1 34885 Endonuclease 1 (AtENDO1) (EC 3.1.30.1) (Bifunctional nuclease I) (AtBFN1) (Deoxyribonuclease ENDO1) (Single-stranded-nucleate endonuclease ENDO1) endoribonuclease activity, producing 5'-phosphomonoesters [GO:0016891]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; single-stranded DNA endodeoxyribonuclease activity [GO:0000014]; T/G mismatch-specific endonuclease activity [GO:0043765]; DNA catabolic process [GO:0006308]; floral organ senescence [GO:0080187]; leaf senescence [GO:0010150] DEVELOPMENTAL STAGE: Present in the margins and tips of the oldest leaves, senescent leaves, differentiating xylem and at the abscission zone of flowers. In flowers, expressed in developing anthers and seeds. Accumulates in stigma, mature anthers, sepals, and petals of older/fully opened flowers Also present in floral organs after fertilization. In mature siliques, observed in abscission zones and in the distal portion of the valve margins. {ECO:0000269|PubMed:18603613, ECO:0000269|PubMed:23340744}. TISSUE SPECIFICITY: Mostly expressed in flowers and during leaf and stem senescence, and, to a lower extent, detectable at low levels in roots, leaves, and stems. Particularly expressed in senescing tissues in a NAC92/ORE1-dependent manner. {ECO:0000269|PubMed:10631260, ECO:0000269|PubMed:18603613, ECO:0000269|PubMed:23340744}. locus:2202114; AT1G11190 nuclease Os04g0636400 protein B9FCR3 B9FCR3_ORYSJ Os04g0636400 OsJ_16323 OSNPB_040636400 ENOG411DVND ABCG11 Q8RXN0 AB11G_ARATH ABC transporter G family member 11 (ABC transporter ABCG.11) (AtABCG11) (Protein CUTICULAR DEFECT AND ORGAN FUSION 1) (Protein DESPERADO) (Protein PERMEABLE LEAVES 1) (White-brown complex homolog protein 11) (AtWBC11) DISRUPTION PHENOTYPE: Bushy phenotype. Abnormal cuticle and pollen grain shapes, reduced levels of wax and cutin monomers, unusual lipidic cytoplasmatic inclusions in epidermal cells, inter-organ postgenital fusions, and altered morphology of trichomes and pavement cells. Highly susceptibility to salt and reduced root branching. {ECO:0000269|PubMed:14675439, ECO:0000269|PubMed:17727615, ECO:0000269|PubMed:17951461, ECO:0000269|PubMed:17971336, ECO:0000269|PubMed:17989085}. Misshapen, torn rosette leaves; Short, thin inflorescence stems; Increased branching; Abnormal leaf venation; Abnormal cuticle-A. Aharoni-2007 FUNCTION: Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. {ECO:0000269|PubMed:14675439, ECO:0000269|PubMed:17727615, ECO:0000269|PubMed:17951461, ECO:0000269|PubMed:17971336, ECO:0000269|PubMed:17989085}. R-ATH-1369062; 78413 ABC transporter G family member 11 (ABC transporter ABCG.11) (AtABCG11) (Protein CUTICULAR DEFECT AND ORGAN FUSION 1) (Protein DESPERADO) (Protein PERMEABLE LEAVES 1) (White-brown complex homolog protein 11) (AtWBC11) external side of plasma membrane [GO:0009897]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; fatty acid transporter activity [GO:0015245]; protein homodimerization activity [GO:0042803]; cotyledon vascular tissue pattern formation [GO:0010588]; cutin transport [GO:0080051]; fatty acid transport [GO:0015908]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; stem vascular tissue pattern formation [GO:0010222] DEVELOPMENTAL STAGE: First observed in seed coat and the endosperm. During embryo development, expressed in the radical tip. In seedlings, localized in the cotyledons, root tip, and young leaves. As secondary root tips emerge, expressed in the pericycle during the initial cell divisions. In leaves, mostly detected in the expanding basal portion, trichomes and stomatal cells. In roots of mature plants, mainly expressed in lateral root primordia and developing lateral roots. In the inflorescence, found in all floral organs, predominantly in the anthers, styles, and young siliques. Upon anthesis and later, progressively restricted to the carpel. {ECO:0000269|PubMed:17727615, ECO:0000269|PubMed:17951461}. TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers, and siliques, mostly in epidermis, trichomes, vasculatures and developing tissues. {ECO:0000269|PubMed:14730060, ECO:0000269|PubMed:17727615, ECO:0000269|PubMed:17951461, ECO:0000269|PubMed:17989085}. locus:2030898; AT1G17840 transporter ABC-2 type transporter family protein, expressed (Os10g0494300 protein) (Putative ABC transporter),Os04g0528300 protein,Os04g0528300 protein (Fragment) Q8LNT5,Q0JBJ8,A0A0P0WCT4,A0A0N7KJE4 Q8LNT5_ORYSJ,Q0JBJ8_ORYSJ,A0A0P0WCT4_ORYSJ,A0A0N7KJE4_ORYSJ OSJNBa0041P03.4 LOC_Os10g35180 Os10g0494300 OSNPB_100494300,Os04g0528300 Os04g0528300 OSNPB_040528300,Os04g0528300 OSNPB_040528300 ENOG411DVNE RTE1 F4ITL6,A0A1P8B0M5 RTE1_ARATH,A0A1P8B0M5_ARATH Protein REVERSION-TO-ETHYLENE SENSITIVITY1,Protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778) DISRUPTION PHENOTYPE: Enhanced ethylene sensitivity. {ECO:0000269|PubMed:16682642}. Enhanced ethylene-response. Largely phenocopies the etr1-7 null mutant.,Weak ethylene-insensitivity of etr1-2 is suppressed by rte1-2. Ethylene responses are similar to those of the wild type. Leaf senescence insensitive to ethylene-C. Chang-2006 FUNCTION: Acts at an early step in the ethylene signaling pathway. Positively regulates ETR1, leading to the negative regulation of ethylene responses. {ECO:0000269|PubMed:16682642, ECO:0000269|PubMed:18643990, ECO:0000269|PubMed:19369589}. 27932,32401 Protein REVERSION-TO-ETHYLENE SENSITIVITY1,Protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; response to ethylene [GO:0009723],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Strongly expressed in 1-4-day-old seedlings in the apical hook, cotyledons, root vascular tissue, root tip and root hairs, with little or no expression in the hypocotyl. In light-grown seedlings, expression could also be seen in the apex and young leaves, and disappeared from the cotyledons by 10 days. In mature plants, expressed in floral buds, the style of mature flowers, stems and the rachis. {ECO:0000269|PubMed:17999643}. locus:2057366; AT2G26070 transmembrane protein 222-like Os01g0711600 protein (cDNA clone:J013034H16, full insert sequence) Q9ASD3 Q9ASD3_ORYSJ Os01g0711600 B1142C05.8 OsJ_03220 OSNPB_010711600 P0456F08.33 ENOG411DVNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCAMP family Secretory carrier-associated membrane protein 1 (Secretory carrier membrane protein 1),Secretory carrier-associated membrane protein 2 (RiSC) (Secretory carrier membrane protein 2) Q8H5X5,Q7F613 SCAM1_ORYSJ,SCAM2_ORYSJ SCAMP1 Os07g0564600 LOC_Os07g37740 OJ1112_E08.118 OsJ_023796,SCAMP2 SC Os01g0780500 LOC_Os01g57220 P0010B10.29 FUNCTION: Probably involved in membrane trafficking. {ECO:0000250}. ENOG411DVNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CH Kinesin-like protein KIN-14Q (Kinesin O12) (OsKCH1),Kinesin-like protein KIN-14P Q0IMS9,B9G8P1 KN14Q_ORYSJ,KN14P_ORYSJ KIN14Q KCH1 O12 Os12g0547500 LOC_Os12g36100 OsJ_36410,KIN14P Os11g0672400 LOC_Os11g44880 OsJ_34709 DISRUPTION PHENOTYPE: Shorter coleoptiles due to impaired cell expansion and increased division. {ECO:0000269|PubMed:20566563}. FUNCTION: Minus end-directed motor protein that transports actin filaments along microtubules. Plays a central role in the polar orientation of actin filaments along microtubules, and thus a contribution to the organization of the cytoskeletal architecture (PubMed:27250543). Links the actin microfilaments with the cortical microtubules in both cycling and non-cycling cells (PubMed:19561334). Required for efficient cell elongation by its participation in the premitotic nuclear positioning (PubMed:20566563). {ECO:0000269|PubMed:19561334, ECO:0000269|PubMed:20566563, ECO:0000269|PubMed:27250543}. ENOG411DVNH DPL1 Q9C509 SGPL_ARATH Sphingosine-1-phosphate lyase (AtSPL1) (S1PL) (SP-lyase) (SPL) (EC 4.1.2.27) (Dihydrosphingosine phosphate lyase 1) (AtDPL1) (Sphingosine-1-phosphate aldolase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18849574}. FUNCTION: Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. May play a minor role in maintenance of sphingolipid metabolism during normal plant development and growth, but be required for maintaining sphingoid long chain bases (LCB) and their phosphorylated derivatives (LCB-P) levels when sphingolipid metabolism is perturbed. May play a role in dehydration stress. {ECO:0000269|PubMed:17635905, ECO:0000269|PubMed:18849574}. PATHWAY: Lipid metabolism; sphingolipid metabolism. ARA:AT1G27980-MONOMER;MetaCyc:AT1G27980-MONOMER; R-ATH-1660661; 4.1.2.27; 4.1.2.27 59478 Sphingosine-1-phosphate lyase (AtSPL1) (S1PL) (SP-lyase) (SPL) (EC 4.1.2.27) (Dihydrosphingosine phosphate lyase 1) (AtDPL1) (Sphingosine-1-phosphate aldolase) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; carboxy-lyase activity [GO:0016831]; pyridoxal phosphate binding [GO:0030170]; sphinganine-1-phosphate aldolase activity [GO:0008117]; carboxylic acid metabolic process [GO:0019752]; sphingolipid catabolic process [GO:0030149] TISSUE SPECIFICITY: Expressed in the peripheral parts of leaves and the bases of trichomes. {ECO:0000269|PubMed:18849574}. locus:2010524; AT1G27980 sphingosine-1-phosphate Sphingosine-1-phosphate lyase (S1PL) (SP-lyase) (SPL) (EC 4.1.2.27) (Sphingosine-1-phosphate aldolase) Q52RG7 SGPL_ORYSJ SPL Os01g0100900 LOC_Os01g01080 OsJ_00009 P0402A09.4 P0672D08.8 FUNCTION: Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis (By similarity). {ECO:0000250}. ENOG411DVNK NLP1,NLP2,NLP4,NLP5,NIN-like protein 1 Q8H111,Q7X9B9,Q9LE38,Q9SFW8,A0A1P8B010,A0A1P8B033 NLP1_ARATH,NLP2_ARATH,NLP4_ARATH,NLP5_ARATH,A0A1P8B010_ARATH,A0A1P8B033_ARATH Protein NLP1 (AtNLP1) (NIN-like protein 1) (Nodule inception protein-like protein 1),Protein NLP2 (AtNLP2) (NIN-like protein 2) (Nodule inception protein-like protein 2),Protein NLP4 (AtNLP4) (NIN-like protein 4) (Nodule inception protein-like protein 4),Protein NLP5 (AtNLP5) (NIN-like protein 5) (Nodule inception protein-like protein 5),Plant regulator RWP-RK family protein FUNCTION: Probable transcription factor. {ECO:0000250}. 100886,107279,94232,90684,73054,72202 Protein NLP1 (AtNLP1) (NIN-like protein 1) (Nodule inception protein-like protein 1),Protein NLP2 (AtNLP2) (NIN-like protein 2) (Nodule inception protein-like protein 2),Protein NLP4 (AtNLP4) (NIN-like protein 4) (Nodule inception protein-like protein 4),Protein NLP5 (AtNLP5) (NIN-like protein 5) (Nodule inception protein-like protein 5),Plant regulator RWP-RK family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2059692;,locus:2122108;,locus:2030397;,locus:2014624; AT2G17150,AT4G35270,AT1G20640,AT1G76350 RWP-RK domain-containing protein Protein NLP1 (OsNLP1) (NIN-like protein 1) (Nodule inception protein-like protein 1),Os09g0549450 protein Q10S83,A0A0P0XQL5 NLP1_ORYSJ,A0A0P0XQL5_ORYSJ NLP1 Os03g0131100 LOC_Os03g03900 OJ1004C08.16 OsJ_09292,Os09g0549450 OSNPB_090549450 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DVNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol 3- and 4-kinase Os11g0188100 protein (Fragment),Os01g0270700 protein (Fragment) A0A0P0XZP2,A0A0P0V1M0 A0A0P0XZP2_ORYSJ,A0A0P0V1M0_ORYSJ Os11g0188100 OSNPB_110188100,Os01g0270700 OSNPB_010270700 ENOG411DVNT Q9FFE0,Q9M8R9 RRAA2_ARATH,RRAA1_ARATH Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 (HMG aldolase 2) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.3) (Regulator of ribonuclease activity homolog 2) (RraA-like protein 2),Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 (HMG aldolase 1) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.3) (Regulator of ribonuclease activity homolog 1) (RraA-like protein 1) FUNCTION: Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2-oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). {ECO:0000250}. 4.1.3.17; 4.1.1.3 17820,17836 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 (HMG aldolase 2) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.3) (Regulator of ribonuclease activity homolog 2) (RraA-like protein 2),Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 (HMG aldolase 1) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.3) (Regulator of ribonuclease activity homolog 1) (RraA-like protein 1) 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [GO:0047443]; metal ion binding [GO:0046872]; oxaloacetate decarboxylase activity [GO:0008948]; ribonuclease inhibitor activity [GO:0008428]; regulation of RNA metabolic process [GO:0051252] locus:2171397;,locus:2075432; AT5G16450,AT3G02770 regulator of 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.3) (EC 4.1.3.17) (Oxaloacetate decarboxylase) Q6Z6G8,Q8W0C5,Q6Z6H0 Q6Z6G8_ORYSJ,Q8W0C5_ORYSJ,Q6Z6H0_ORYSJ Os02g0762100 Os02g0762100 OSNPB_020762100 P0486G03.14,Os01g0722800 Os01g0722800 OsJ_03301 OSNPB_010722800 P0022F10.8 P0690B02.35,Os02g0761900 OsJ_08478 OSNPB_020761900 P0486G03.12 FUNCTION: Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2-oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. {ECO:0000256|RuleBase:RU004338}. ENOG411DVNU RS2Z33,RS2Z32 Q8VYA5,Q9FYB7 RSZ33_ARATH,RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z33 (RS-containing zinc finger protein 33) (At-RS2Z33) (At-RSZ33) (AtRSZ33),Serine/arginine-rich splicing factor RS2Z32 (RS-containing zinc finger protein 32) (At-RS2Z32) (At-RSZ32) (AtRSZ32) (Serine/arginine-rich splicing factor RSZ34) (AtRSZ34) FUNCTION: Splicing factor involved in constitutive and/or alternative splicing. Regulates the splicing of its own pre-mRNA and the alternative splicing of RS30, RS31 and RS34. Associates the cyclin-dependent kinase G1 (CDKG1) with the spliceosome and recruits it to U1 snRNP to facilitate splicing. {ECO:0000269|PubMed:12972547, ECO:0000269|PubMed:16936312, ECO:0000269|PubMed:23404887}.,FUNCTION: Probably involved in intron recognition and spliceosome assembly. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses (PubMed:17319848), but is not affected by the light/dark regimes (PubMed:24763593). {ECO:0000305|PubMed:17319848, ECO:0000305|PubMed:24763593}.,MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}. 32893,31823 Serine/arginine-rich splicing factor RS2Z33 (RS-containing zinc finger protein 33) (At-RS2Z33) (At-RSZ33) (AtRSZ33),Serine/arginine-rich splicing factor RS2Z32 (RS-containing zinc finger protein 32) (At-RS2Z32) (At-RSZ32) (AtRSZ32) (Serine/arginine-rich splicing factor RSZ34) (AtRSZ34) nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380]; spliceosomal complex assembly [GO:0000245],spliceosomal complex [GO:0005681]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed in roots, flowers, anthers, pollen, ovules, style and developing seeds. Not detected in stems or leaves. {ECO:0000269|PubMed:12176998, ECO:0000269|PubMed:12972547}. locus:2049766;,locus:2083936; AT2G37340,AT3G53500 splicing factor Os05g0162600 protein (cDNA clone:001-116-H05, full insert sequence) (cDNA clone:J033102C01, full insert sequence),Os05g0120100 protein,Os03g0285900 protein (RNA recognition motif family protein, expressed),Os01g0155600 protein (Putative splicing factor) (cDNA clone:006-311-F07, full insert sequence),Os05g0120100 protein (Fragment) Q75IR8,Q0DL70,Q10N19,Q5ZCD9,A0A0N7KK22 Q75IR8_ORYSJ,Q0DL70_ORYSJ,Q10N19_ORYSJ,Q5ZCD9_ORYSJ,A0A0N7KK22_ORYSJ Os05g0162600 Os05g0162600 OsJ_17224 OSJNBb0099P06.5 OSNPB_050162600,Os05g0120100 Os05g0120100 OsJ_16924 OSNPB_050120100,Os03g0285900 LOC_Os03g17710 Os03g0285900 OsJ_10413 OSNPB_030285900,Os01g0155600 Os01g0155600 OSNPB_010155600 P0011G08.21,Os05g0120100 OSNPB_050120100 ENOG411DVNW WRKY20 Q93WV0,A0A1P8B753,A0A1P8B739 WRK20_ARATH,A0A1P8B753_ARATH,A0A1P8B739_ARATH Probable WRKY transcription factor 20 (WRKY DNA-binding protein 20),WRKY family transcription factor family protein FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 61034,42462,56955 Probable WRKY transcription factor 20 (WRKY DNA-binding protein 20),WRKY family transcription factor family protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; response to 1-aminocyclopropane-1-carboxylic acid [GO:0009961]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2133852; AT4G26640 WRKY transcription factor Os07g0583700 protein (Putative WRKY transcription factor 20) (WRKY transcription factor) (WRKY9) (cDNA clone:J023062H03, full insert sequence) Q84ZS7 Q84ZS7_ORYSJ OJ1127_E01.114 Os07g0583700 OsJ_24901 OSNPB_070583700 ENOG411DVNY CYP65 Q9FJX0 PPIL2_ARATH Peptidyl-prolyl cis-trans isomerase CYP65 (AtCYP65) (PPIase CYP65) (EC 2.3.2.27) (EC 5.2.1.8) (Cyclophilin-65) (Peptidyl-prolyl cis-trans isomerase-like 2) (Plant U-box protein 49) (RING-type E3 ubiquitin transferase isomerase-like 2) (Rotamase) (U-box domain-containing protein 49) FUNCTION: May catalyze the cis-trans isomerization of proline imidic peptide bonds in oligopeptides thereby assisting the folding of proteins. May also function as a chaperone, playing a role in intracellular transport of proteins. May also have a protein ubiquitin ligase activity acting as an E3 ubiquitin protein ligase or as a ubiquitin-ubiquitin ligase promoting elongation of ubiquitin chains on proteins. {ECO:0000250|UniProtKB:Q08752, ECO:0000250|UniProtKB:Q13356}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000250|UniProtKB:Q13356}. 2.3.2.27; 5.2.1.8 65023 Peptidyl-prolyl cis-trans isomerase CYP65 (AtCYP65) (PPIase CYP65) (EC 2.3.2.27) (EC 5.2.1.8) (Cyclophilin-65) (Peptidyl-prolyl cis-trans isomerase-like 2) (Plant U-box protein 49) (RING-type E3 ubiquitin transferase isomerase-like 2) (Rotamase) (U-box domain-containing protein 49) nucleus [GO:0005634]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; ubiquitin-ubiquitin ligase activity [GO:0034450]; protein folding [GO:0006457]; protein polyubiquitination [GO:0000209] TISSUE SPECIFICITY: Expressed in leaves, flower buds and stems. Lower levels of expression in roots. {ECO:0000269|PubMed:15051864}. locus:2158636; AT5G67530 Peptidyl-prolyl cis-trans Os03g0201100 protein A0A0P0VUB1 A0A0P0VUB1_ORYSJ Os03g0201100 OSNPB_030201100 ENOG411E198 Q9FLH8 SCRK7_ARATH Probable fructokinase-7 (EC 2.7.1.4) FUNCTION: May play an important role in maintaining the flux of carbon towards starch formation. {ECO:0000250|UniProtKB:Q6XZ79}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT5G51830-MONOMER; Starch and sucrose metabolism (00500),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 2.7.1.4 37028 Probable fructokinase-7 (EC 2.7.1.4) cytosol [GO:0005829]; ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; carbohydrate biosynthetic process [GO:0016051]; fatty acid biosynthetic process [GO:0006633]; response to cadmium ion [GO:0046686]; starch biosynthetic process [GO:0019252] locus:2165361; AT5G51830 fructokinase EC 2.7.1.4 NA NA NA NA NA NA NA ENOG411EF2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411E6FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET domain NA NA NA NA NA NA NA ENOG411E6FJ His1-3,HIS1-3 P94109,Q3EBY3 P94109_ARATH,Q3EBY3_ARATH Histone H1 (Histone H1-3) (Putative histone H1 protein),Histone H1-3 19049,15715 Histone H1 (Histone H1-3) (Putative histone H1 protein),Histone H1-3 nucleosome [GO:0000786]; nucleus [GO:0005634]; nucleosomal DNA binding [GO:0031492]; nucleosome assembly [GO:0006334]; response to water deprivation [GO:0009414],nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; nucleosome assembly [GO:0006334] locus:2060984; AT2G18050 Histone H1 Os04g0253000 protein (cDNA clone:J033052L06, full insert sequence),Os06g0130800 protein (Putative histone H1) (cDNA clone:J023037L12, full insert sequence) B7EMI6,Q9SNN5 B7EMI6_ORYSJ,Q9SNN5_ORYSJ Os04g0253000 OSNPB_040253000,Os06g0130800 Os06g0130800 OsJ_19998 OSNPB_060130800 P0493C11.9 ENOG411E6FI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0486700 protein (cDNA, clone: J065121F09, full insert sequence) Q6ZCW7 Q6ZCW7_ORYSJ Os08g0486700 OsJ_27731 OSNPB_080486700 P0028A08.5 P0481F05.26 ENOG411E6FH F8F6_100 Q9LZC0,Q8GY70 Q9LZC0_ARATH,Q8GY70_ARATH Emb|CAB85509.1 (Uncharacterized protein F8F6_100),At3g10120 (Uncharacterized protein At3g10120/T22K18_5) 20389,20153 Emb|CAB85509.1 (Uncharacterized protein F8F6_100),At3g10120 (Uncharacterized protein At3g10120/T22K18_5) locus:2150695;,locus:2100073; AT5G03890,AT3G10120 NA NA NA NA NA NA NA NA ENOG411E6FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0677100 protein B9EYK7 B9EYK7_ORYSJ Os01g0677100 OsJ_02995 OSNPB_010677100 ENOG411E6FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tctex-1 family NA NA NA NA NA NA NA ENOG411E6FC GATA16 Q9FJ10 GAT16_ARATH GATA transcription factor 16 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 15322 GATA transcription factor 16 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2155919; AT5G49300 gata transcription factor NA NA NA NA NA NA NA ENOG411E6FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0539600 protein (Os06g0539700 protein) (cDNA clone:002-115-A09, full insert sequence) B7E9V0 B7E9V0_ORYSJ Os06g0539700 Os06g0539600 OSNPB_060539700 ENOG411E6FA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Expressed protein (Os03g0746900 protein) (cDNA clone:002-127-D05, full insert sequence) Q94GP7 Q94GP7_ORYSJ OJ1124_H03.16 LOC_Os03g53540 Os03g0746900 OsJ_12554 OSNPB_030746900 ENOG411E6FG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain of DNA photolyase NA NA NA NA NA NA NA ENOG411E6FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Calcium binding protein NA NA NA NA NA NA NA ENOG411E6FE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6FD SAUR74 Q9LSI2 Q9LSI2_ARATH At3g12955 (SAUR-like auxin-responsive protein family) 16302 At3g12955 (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:505006337; AT3G12955 Auxin responsive protein Expressed protein (Os12g0609600 protein) (cDNA clone:002-175-C07, full insert sequence) Q2QMC4 Q2QMC4_ORYSJ Os12g0609600 LOC_Os12g41600 Os12g0609600 OSNPB_120609600 ENOG411E6FZ Q9LW16 Q9LW16_ARATH AT3g15630/MSJ11_3 (Plant/protein) 11894 AT3g15630/MSJ11_3 (Plant/protein) locus:2093247; AT3G15630 NA Os05g0176700 protein (cDNA clone:J023110H11, full insert sequence),Os05g0189200 protein Q6AT22,A0A0P0WIV3 Q6AT22_ORYSJ,A0A0P0WIV3_ORYSJ Os05g0176700 OSJNBa0029B02.7 OSNPB_050176700,Os05g0189200 OSNPB_050189200 ENOG411E6FY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E6FX RPL35 Q8VZ55 RK35_ARATH 50S ribosomal protein L35, chloroplastic DISRUPTION PHENOTYPE: Embryonic lethality. Embryo development arrested at the globular stage. {ECO:0000269|PubMed:22900828}. 16089 50S ribosomal protein L35, chloroplastic chloroplast [GO:0009507]; large ribosomal subunit [GO:0015934]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2061441; AT2G24090 50S ribosomal protein L35 50S ribosomal protein L35 Q67W51 Q67W51_ORYSJ Os06g0647100 OJ1226_A12.25 OsJ_22158 OSJNBa0062J02.9 OSNPB_060647100 ENOG411E6FS SAUR32,F21F14.70 Q9ZUZ3,Q9M275 SAU32_ARATH,Q9M275_ARATH Auxin-responsive protein SAUR32 (Protein ABOLISHED APICAL HOOK MAINTENANCE 1) (Protein SMALL AUXIN UP RNA 32),SAUR-like auxin-responsive protein family (Uncharacterized protein F21F14.70) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|Ref.6}. FUNCTION: May play a role in the apical hook development (Ref.6). {ECO:0000269|Ref.6}. MISCELLANEOUS: Seedlings over-expressing SAUR32 display reduced hypocotyl elongation and are defective in apical hook maintenance when grown in the dark. {ECO:0000269|Ref.6}. 13950,15480 Auxin-responsive protein SAUR32 (Protein ABOLISHED APICAL HOOK MAINTENANCE 1) (Protein SMALL AUXIN UP RNA 32),SAUR-like auxin-responsive protein family (Uncharacterized protein F21F14.70) cytoplasm [GO:0005737]; nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008]; regulation of seedling development [GO:1900140],response to auxin [GO:0009733] DEVELOPMENTAL STAGE: During seedling growth expressed on the inner side of apical hook. {ECO:0000269|Ref.6}. TISSUE SPECIFICITY: Expressed in roots, leaves and stems. {ECO:0000269|Ref.6}. locus:2062759;,locus:2079552; AT2G46690,AT3G61900 Auxin-induced protein Auxin-induced protein-like (Os06g0714300 protein) (cDNA clone:002-121-C06, full insert sequence) Q5Z7T1 Q5Z7T1_ORYSJ Os06g0714300 Os06g0714300 OJ1136_F03.27 OSNPB_060714300 ENOG411E6FR Q67Y48,Q1RKP4,A0A1P8B7B0,A0A1P8B7B1,A0A1P8B7B4,A0A1P8B7B3 Q67Y48_ARATH,Q1RKP4_ARATH,A0A1P8B7B0_ARATH,A0A1P8B7B1_ARATH,A0A1P8B7B4_ARATH,A0A1P8B7B3_ARATH At4g28820 (HIT-type Zinc finger family protein) (mRNA, clone: RAFL25-15-L08),At4g28820 (HIT-type Zinc finger family protein),HIT-type Zinc finger family protein 19082,19153,14181,14252,19974,19903 At4g28820 (HIT-type Zinc finger family protein) (mRNA, clone: RAFL25-15-L08),At4g28820 (HIT-type Zinc finger family protein),HIT-type Zinc finger family protein metal ion binding [GO:0046872] locus:2117808; AT4G28820 zinc finger NA NA NA NA NA NA NA ENOG411E6FQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os02g0438900 protein Q6Z7G7 Q6Z7G7_ORYSJ Os02g0438900 OJ1570_H12.17 OsJ_06551 OSNPB_020438900 ENOG411E6FP GASA6 Q6NMQ7 GASA6_ARATH Gibberellin-regulated protein 6 (GAST1 protein homolog 6) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 11341 Gibberellin-regulated protein 6 (GAST1 protein homolog 6) extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to karrikin [GO:0080167]; response to sucrose [GO:0009744] locus:2019195; AT1G74670 Gibberellin-regulated protein NA NA NA NA NA NA NA ENOG411E6FW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E6FV BAP2 Q58FX0 BAP2_ARATH BON1-associated protein 2 (Protein BON1-ASSOCIATED PROTEIN 1-LIKE) DISRUPTION PHENOTYPE: No visible phenotype, but accelerated hypersensitive response (HR). Bap1 and bap2 double mutant is seedling lethal. {ECO:0000269|PubMed:17631528}. FUNCTION: Negative regulator of cell death and defense responses. Exhibits calcium-dependent phospholipid binding properties (By similarity). {ECO:0000250, ECO:0000269|PubMed:17631528}. MISCELLANEOUS: Overexpression of BAP2 can suppress defects in bap1 mutants. 22993 BON1-associated protein 2 (Protein BON1-ASSOCIATED PROTEIN 1-LIKE) membrane [GO:0016020]; defense response [GO:0006952] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:17631528}. locus:2050782; AT2G45760 C2 NA NA NA NA NA NA NA ENOG411E6FU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0795100 protein) (cDNA clone:J013158I01, full insert sequence) Q6F381 Q6F381_ORYSJ OSJNBb0021G19.16 LOC_Os03g58090 Os03g0795100 OsJ_12938 OSNPB_030795100 ENOG411E6FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR42 Q7XN30 ORR42_ORYSJ RR42 Os04g0212450 LOC_Os04g13480 OsJ_13850 OSJNBa0021F22.1 OSJNBa0083I11.14 FUNCTION: Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. ENOG411E6F9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nucleolar protein Expressed protein (Os11g0545000 protein),Os11g0580500 protein,Os11g0545000 protein (Fragment),Os11g0544900 protein Q2R2Y6,A0A0N7KT46,A0A0P0Y2Z3,A0A0P0Y3L6 Q2R2Y6_ORYSJ,A0A0N7KT46_ORYSJ,A0A0P0Y2Z3_ORYSJ,A0A0P0Y3L6_ORYSJ LOC_Os11g34230 Os11g0545000 OSNPB_110545000,Os11g0580500 OSNPB_110580500,Os11g0545000 OSNPB_110545000,Os11g0544900 OSNPB_110544900 ENOG411E6F8 Q9SHA0 Q9SHA0_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At2g37870; T8P21.22) 11985 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At2g37870; T8P21.22) plasmodesma [GO:0009506]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2065634; AT2G37870 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411E6F3 MJC20.18 Q8RWR9 Q8RWR9_ARATH Uncharacterized protein At5g42070 17682 Uncharacterized protein At5g42070 chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535] locus:2165795; AT5G42070 NA Os01g0235100 protein A0A0P0V022 A0A0P0V022_ORYSJ Os01g0235100 OSNPB_010235100 ENOG411E6F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase Mutator family NA NA NA NA NA NA NA ENOG411E6F1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein Os10g0488400 protein (Fragment) Q0IWT9 Q0IWT9_ORYSJ Os10g0488400 Os10g0488400 OSNPB_100488400 ENOG411E6F0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0086B14.1 protein (Os04g0450000 protein) (cDNA clone:002-142-G09, full insert sequence) Q7XV54 Q7XV54_ORYSJ Os04g0450000 Os04g0450000 OSJNBa0086B14.1 OSNPB_040450000 ENOG411E6F7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Expressed protein (Os12g0106900 protein) (cDNA clone:006-209-H11, full insert sequence) (cDNA clone:J013115L04, full insert sequence) (cDNA clone:J033094E18, full insert sequence),Os01g0324400 protein (Fragment),Os12g0106900 protein (Fragment),Os07g0239000 protein (Fragment) Q2QYT4,A0A0P0V1Q8,A0A0P0Y5X0,A0A0P0X452 Q2QYT4_ORYSJ,A0A0P0V1Q8_ORYSJ,A0A0P0Y5X0_ORYSJ,A0A0P0X452_ORYSJ Os12g0106900 LOC_Os12g01620 Os12g0106900 OSNPB_120106900,Os01g0324400 OSNPB_010324400,Os12g0106900 OSNPB_120106900,Os07g0239000 OSNPB_070239000 ENOG411E6F6 ERF9 Q9FE67 ERF80_ARATH Ethylene-responsive transcription factor 9 (AtERF9) (Ethylene-responsive element-binding factor 9) (EREBP-9) FUNCTION: Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. 22267 Ethylene-responsive transcription factor 9 (AtERF9) (Ethylene-responsive element-binding factor 9) (EREBP-9) membrane [GO:0016020]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; glucosinolate metabolic process [GO:0019760]; transcription, DNA-templated [GO:0006351] locus:2167659; AT5G44210 Transcription factor NA NA NA NA NA NA NA ENOG411E6F5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0667100 protein Q6ET98 Q6ET98_ORYSJ Os02g0667100 OJ1486_E07.25 OJ1725_H08.2 OSNPB_020667100 ENOG411EJRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF825) NA NA NA NA NA NA NA ENOG411EFMD B6IDH8,A0A1P8ASK7 B6IDH8_ARATH,A0A1P8ASK7_ARATH At1g58460,Uncharacterized protein 20428,20820 At1g58460,Uncharacterized protein cytokinin metabolic process [GO:0009690] locus:2037644; AT1G58460 NA NA NA NA NA NA NA NA ENOG411EFMN F4IV13 F4IV13_ARATH Transmembrane protein 42301 Transmembrane protein integral component of membrane [GO:0016021] locus:504956069; AT2G44735 NA NA NA NA NA NA NA NA ENOG411EFMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3' exoribonuclease family domain 1 NA NA NA NA NA NA NA ENOG411EFMW Q9LVJ2 Q9LVJ2_ARATH At3g14060 14416 At3g14060 cell wall [GO:0005618]; cytoplasm [GO:0005737] locus:2088197; AT3G14060 NA NA NA NA NA NA NA NA ENOG411EFMU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EFMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0154950 protein (Fragment) A0A0N7KCD0 A0A0N7KCD0_ORYSJ Os01g0154950 OSNPB_010154950 ENOG411E1BU petD P56774 PETD_ARATH Cytochrome b6-f complex subunit 4 (17 kDa polypeptide) FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. {ECO:0000255|HAMAP-Rule:MF_01344}. 17431 Cytochrome b6-f complex subunit 4 (17 kDa polypeptide) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; oxidoreductase activity [GO:0016491]; photosynthetic electron transport chain [GO:0009767] locus:504954696; ATCG00730 Component of the cytochrome b6-f complex which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) cyclic electron flow around PSI and state transitions Cytochrome b6-f complex subunit 4 (17 kDa polypeptide) P0C319 PETD_ORYSJ petD LOC_Osp1g00650 Nip099 FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. {ECO:0000255|HAMAP-Rule:MF_01344}. MISCELLANEOUS: A longer mRNA that is not produced by splicing has been shown to be transcribed in barley and maize; it can also be predicted for rice. It is not known if this mRNA is translated. ENOG411E1BR SWC6 Q9FHW2 SWC6_ARATH SWR1 complex subunit 6 (Protein SERRATED LEAVES AND EARLY FLOWERING) DISRUPTION PHENOTYPE: Early flowering, leaf serration, production of extra petals and weak apical dominance. {ECO:0000269|PubMed:17142478, ECO:0000269|PubMed:17470967}. early flowering leaf serration production of extral petals weak apical dominance. Serrated leaves; Increased petal number; Small siliques; Early flowering-I. Lee-2007 FUNCTION: Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. Coodinates SWR1-C, FRI-C (FLC transcription activator complex), histone methyltransferase and general transcription factors. Represses flowering by positively regulating FLC and MAF4. Binds to the promoter region of FLC chromatin. {ECO:0000269|PubMed:17142478, ECO:0000269|PubMed:17470967, ECO:0000269|PubMed:21282526}. 19137 SWR1 complex subunit 6 (Protein SERRATED LEAVES AND EARLY FLOWERING) nuclear speck [GO:0016607]; nucleus [GO:0005634]; Swr1 complex [GO:0000812]; histone deacetylase binding [GO:0042826]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; nucleosome binding [GO:0031491]; cell differentiation [GO:0030154]; defense response to bacterium [GO:0042742]; flower development [GO:0009908]; histone exchange [GO:0043486]; regulation of developmental growth [GO:0048638]; regulation of flower development [GO:0009909]; regulation of histone deacetylation [GO:0031063] TISSUE SPECIFICITY: Expressed in root, lateral root primordia, shoot apex, leaves, stems, inflorescences, flowers, axillary buds, developing siliques and premature seeds. {ECO:0000269|PubMed:17142478, ECO:0000269|PubMed:17470967}. locus:505006661; AT5G37055 Zinc finger HIT domain-containing protein HIT zinc finger family protein, expressed (Os03g0367800 protein) (cDNA clone:002-150-E06, full insert sequence) Q10KW5 Q10KW5_ORYSJ Os03g0367800 LOC_Os03g25260 OsJ_10979 OSNPB_030367800 ENOG411E1BE GCR2,GCL2 F4IEM5,Q8VZQ6 GCR2_ARATH,GCL2_ARATH LanC-like protein GCR2 (G-protein coupled receptor 2),LanC-like protein GCL2 (G protein-coupled receptor 2-like protein 2) (Protein GCR2-like 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. However, in growth conditions described in PubMed:17347412 mutant plants have decreased sensitivity to abscisic acid (ABA). {ECO:0000269|PubMed:17347412, ECO:0000269|PubMed:17894782, ECO:0000269|PubMed:18714360}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18714360}. Absence of ABA-induced inhibition of seed germination.,Mutant plants exhibit all known major ABA defects (seed dormancy stomatal opening growth inhibition).,Reduced seed dormancy phenotype.,Seedling growth inhibition by ABA was substantially reduced in the mutant compared with that of the wild type. In the absence of ABA the mutant seedlings developed normally and were indistinguishable from the wild-type seedlings.,The defect exhibited by the double mutant in ABA-induced stomatal closure was similar to that exhibited by both single mutants. Large stomatal width; Freshly harvested seeds germinate well-L. Ma-2007 FUNCTION: May play a role in abscisic acid (ABA) signaling. {ECO:0000269|PubMed:17347412, ECO:0000269|PubMed:17894782, ECO:0000269|PubMed:18714360, ECO:0000269|PubMed:19286934}.,FUNCTION: May play a role in signaling. May be not involved in abscisic acid (ABA) signaling. {ECO:0000269|PubMed:18714360}. 46451,44490 LanC-like protein GCR2 (G-protein coupled receptor 2),LanC-like protein GCL2 (G protein-coupled receptor 2-like protein 2) (Protein GCR2-like 2) extrinsic component of membrane [GO:0019898]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; metal ion binding [GO:0046872]; abscisic acid-activated signaling pathway [GO:0009738]; maintenance of seed dormancy [GO:0010231]; regulation of abscisic acid-activated signaling pathway [GO:0009787],extrinsic component of membrane [GO:0019898]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; signal transduction [GO:0007165] locus:2011466;,locus:2051449; AT1G52920,AT2G20770 Lanthionine synthetase C-like protein OSJNBa0074L08.13 protein (OSJNBa0081C01.1 protein) (Os04g0529600 protein) Q7X7D6 Q7X7D6_ORYSJ Os04g0529600 OsJ_15552 OSJNBa0074L08.13 OSJNBa0081C01.1 OSNPB_040529600 ENOG411E1BG PAB6 O04319 PABP6_ARATH Polyadenylate-binding protein 6 (PABP-6) (Poly(A)-binding protein 6) FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation (By similarity). {ECO:0000250}. MISCELLANEOUS: A.thaliana contains 8 PABP genes. R-ATH-156827;R-ATH-975956;R-ATH-975957; 60353 Polyadenylate-binding protein 6 (PABP-6) (Poly(A)-binding protein 6) cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA metabolic process [GO:0016071]; regulation of translation [GO:0006417]; translational initiation [GO:0006413] TISSUE SPECIFICITY: Expressed at low levels in leaves and young seedlings. {ECO:0000269|PubMed:12586718}. locus:2094922; AT3G16380 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E1BA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cysteine-rich repeat secretory protein 33 kDa secretory protein-like (Os02g0734800 protein) (cDNA clone:002-155-E10, full insert sequence) Q6Z2H6 Q6Z2H6_ORYSJ Os02g0734800 OSNPB_020734800 P0487D09.3 P0643A10.55 ENOG411E1BB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os05g0526700 protein (cDNA clone:002-143-D04, full insert sequence) Q65X87 Q65X87_ORYSJ Os05g0526700 Os05g0526700 OJ1187_E11.1 OJ1593_C11.15 OsJ_19275 OSNPB_050526700 ENOG411E1BC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Haemolysin-III related Haemolysin-III related family protein, expressed (Os03g0200000 protein),Os03g0432200 protein Q10QE3,A0A0P0VZY6 Q10QE3_ORYSJ,A0A0P0VZY6_ORYSJ Os03g0200000 LOC_Os03g10300 OsJ_09801 OSNPB_030200000,Os03g0432200 OSNPB_030432200 ENOG411DXQ7 Q9C9V6 Y1790_ARATH BTB/POZ domain-containing protein At1g67900 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 70315 BTB/POZ domain-containing protein At1g67900 protein ubiquitination [GO:0016567] locus:2200286; AT1G67900 BTB POZ domain-containing protein Os02g0594700 protein (Fragment) Q0DZW7 Q0DZW7_ORYSJ Os02g0594700 Os02g0594700 OSNPB_020594700 ENOG411DXQ6 MHJ24.7 Q9FMI8 Q9FMI8_ARATH At5g64090 (Hyccin) (Uncharacterized protein At5g64090) 47725 At5g64090 (Hyccin) (Uncharacterized protein At5g64090) plasma membrane [GO:0005886] locus:2164421; AT5G64090 Hyccin At5g64090 (Expressed protein) (Os11g0169600 protein) (cDNA, clone: J100085M11, full insert sequence) Q53JH1 Q53JH1_ORYSJ Os11g0169600 LOC_Os11g06860 Os11g0169600 OsJ_33110 OSNPB_110169600 ENOG411DXQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os03g0130900 protein (Serine/threonine-protein kinase RLCKVII, putative, expressed) (cDNA clone:001-200-D07, full insert sequence) (cDNA clone:J033105E05, full insert sequence) Q10S85 Q10S85_ORYSJ LOC_Os03g03880 Os03g0130900 OsJ_09290 OSNPB_030130900 ENOG411DXQ2 AUG5 Q9FMB4 AUG5_ARATH AUGMIN subunit 5 DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22505726}. FUNCTION: Involved in microtubules reorganization during spindle and phragmoplast development. {ECO:0000269|PubMed:22505726}. 89181 AUGMIN subunit 5 HAUS complex [GO:0070652]; phragmoplast [GO:0009524]; spindle microtubule [GO:0005876]; microtubule minus-end binding [GO:0051011]; cell division [GO:0051301]; spindle assembly [GO:0051225] locus:2152287; AT5G38880 NA Os09g0386600 protein (Fragment) A0A0P0XLL8 A0A0P0XLL8_ORYSJ Os09g0386600 OSNPB_090386600 ENOG411DXQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region Os05g0548500 protein A0A0P0WQF3 A0A0P0WQF3_ORYSJ Os05g0548500 OSNPB_050548500 ENOG411DXQ8 PUB8 O81902 PUB8_ARATH U-box domain-containing protein 8 (EC 2.3.2.27) (Plant U-box protein 8) (RING-type E3 ubiquitin transferase PUB8) FUNCTION: Functions as an E3 ubiquitin ligase (By similarity). Involved in the age-dependent pseudo-self-compatibility process. {ECO:0000250, ECO:0000269|PubMed:17412590}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 40875 U-box domain-containing protein 8 (EC 2.3.2.27) (Plant U-box protein 8) (RING-type E3 ubiquitin transferase PUB8) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:17412590}. locus:2141226; AT4G21350 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411DXQW SCL7,SCL4 Q9SCR0,Q9FL03 SCL7_ARATH,SCL4_ARATH Scarecrow-like protein 7 (AtSCL7) (GRAS family protein 19) (AtGRAS-19),Scarecrow-like protein 4 (AtSCL4) (GRAS family protein 32) (AtGRAS-32) FUNCTION: Probable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.,FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 60779,64587 Scarecrow-like protein 7 (AtSCL7) (GRAS family protein 19) (AtGRAS-19),Scarecrow-like protein 4 (AtSCL4) (GRAS family protein 32) (AtGRAS-32) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, sepals, filaments of stamen, and in the central cylinder of the elongation zone in root. {ECO:0000269|PubMed:18500650}. locus:2101694;,locus:2174974; AT3G50650,AT5G66770 Scarecrow-like protein SCARECROW-LIKE protein 7 (Os-SCL7) Q53K16 SCL7_ORYSJ SCL7 LOC_Os03g51330 Os03g0723000 FUNCTION: Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}. ENOG411DXQV O22939 O22939_ARATH Uncharacterized protein At2g41810 40262 Uncharacterized protein At2g41810 locus:2054351; AT2G41810 Protein of unknown function (DUF642) NA NA NA NA NA NA NA ENOG411DXQT SIS3 Q8GYT9,A0A1I9LMR5,A0A1I9LMR7 SIS3_ARATH,A0A1I9LMR5_ARATH,A0A1I9LMR7_ARATH E3 ubiquitin-protein ligase SIS3 (EC 2.3.2.27) (Protein SUGAR INSENSITIVE 3) (RING-type E3 ubiquitin transferase SIS3),SUGAR-INSENSITIVE 3 DISRUPTION PHENOTYPE: Resistance to high concentrations of exogenous glucose and sucrose on early seedling development. {ECO:0000269|PubMed:20147494}. Insensitive to elevated sugar-S. Gibson-2010 FUNCTION: E3 ubiquitin protein ligase that acts as positive regulator of sugar signaling during early seedling development. Possesses E3 ligase activity in vitro. {ECO:0000269|PubMed:20147494}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 40686,33831,38956 E3 ubiquitin-protein ligase SIS3 (EC 2.3.2.27) (Protein SUGAR INSENSITIVE 3) (RING-type E3 ubiquitin transferase SIS3),SUGAR-INSENSITIVE 3 integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; sugar mediated signaling pathway [GO:0010182],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:20147494}. locus:2097830; AT3G47990 E3 ubiquitin-protein ligase Os05g0145000 protein (Unknow protein) (cDNA clone:J033023F07, full insert sequence) Q6AUI1 Q6AUI1_ORYSJ Os05g0145000 Os05g0145000 OsJ_17095 OSJNBb0015A05.3 OSNPB_050145000 ENOG411DXQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein Os02g0199500 protein Q6Z7A7 Q6Z7A7_ORYSJ Os02g0199500 OsJ_05782 OSNPB_020199500 P0026H03.30 P0419A09.1 ENOG411DXQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mo25-like protein Os07g0585100 protein (cDNA clone:J033124H02, full insert sequence) Q0D536 Q0D536_ORYSJ Os07g0585100 Os07g0585100 OSNPB_070585100 ENOG411DXQY PAE1,PAE2 O81149,Q42134 PSA5A_ARATH,PSA5B_ARATH Proteasome subunit alpha type-5-A (EC 3.4.25.1) (20S proteasome alpha subunit E-1),Proteasome subunit alpha type-5-B (EC 3.4.25.1) (20S proteasome alpha subunit E-2) (Proteasome component Z) Susceptible to lettuce mosaic virus-S. German-Retana-2011 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 25947,25977 Proteasome subunit alpha type-5-A (EC 3.4.25.1) (20S proteasome alpha subunit E-1),Proteasome subunit alpha type-5-B (EC 3.4.25.1) (20S proteasome alpha subunit E-2) (Proteasome component Z) cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; vacuolar membrane [GO:0005774]; ribonuclease activity [GO:0004540]; structural constituent of ribosome [GO:0003735]; threonine-type endopeptidase activity [GO:0004298]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to cadmium ion [GO:0046686]; ribosome assembly [GO:0042255],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; ribonuclease activity [GO:0004540]; structural constituent of ribosome [GO:0003735]; threonine-type endopeptidase activity [GO:0004298]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; ribosome assembly [GO:0042255] locus:2197071;,locus:2091065; AT1G53850,AT3G14290 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity Proteasome subunit alpha type-5 (EC 3.4.25.1) (20S proteasome alpha subunit E) (20S proteasome subunit alpha-5) Q9LSU1 PSA5_ORYSJ PAE1 Os11g0615700 LOC_Os11g40140 OsJ_34630 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. ENOG411DXQX WDL4 Q9SJ62 WDL4_ARATH Protein WVD2-like 4 FUNCTION: Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. {ECO:0000250|UniProtKB:Q8GYX9}. 46697 Protein WVD2-like 4 cytoplasm [GO:0005737]; microtubule [GO:0005874] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:23653471}. locus:2039235; AT2G35880 lymphoid organ expressed yellow head virus receptor protein Os11g0571900 protein (Targeting protein for Xklp2 containing protein, expressed) (cDNA clone:J033076E07, full insert sequence) Q2R2B9 Q2R2B9_ORYSJ Os11g0571900 LOC_Os11g36340 Os11g0571900 OsJ_24413 OSNPB_110571900 ENOG411DXQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0552100 protein,Os01g0687300 protein (cDNA clone:J033127O15, full insert sequence) Q6AUD1,Q5N7L8 Q6AUD1_ORYSJ,Q5N7L8_ORYSJ Os05g0552100 OsJ_19465 OSJNBa0079H23.11 OSNPB_050552100,Os01g0687300 Os01g0687300 OsJ_03055 OSNPB_010687300 P0519D04.18 ENOG411DXQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0584100 protein,Os12g0258600 protein A0A0P0V4H9,A0A0P0Y8V9 A0A0P0V4H9_ORYSJ,A0A0P0Y8V9_ORYSJ Os01g0584100 OSNPB_010584100,Os12g0258600 OSNPB_120258600 ENOG411DXQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family HVA22-like protein Q0JDB4 Q0JDB4_ORYSJ Os04g0415200 Os04g0415200 OsJ_14752 OSNPB_040415200 ENOG411DXQC sks3 A0A1P8BGY1,F4K1P9 A0A1P8BGY1_ARATH,F4K1P9_ARATH SKU5 similar 3 65002,69093 SKU5 similar 3 copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491],anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722] locus:2166086; AT5G48450 monocopper oxidase-like protein Os01g0100400 protein (Putative multi-copper oxidase-related protein) (cDNA clone:J033040A20, full insert sequence) Q655L8 Q655L8_ORYSJ Os01g0100400 OSJNOa264G09.3 OSNPB_010100400 P0672D08.3 ENOG411DXQN IBR5 Q84JU4 IBR5_ARATH Protein-tyrosine-phosphatase IBR5 (EC 3.1.3.48) (Protein INDOLE-3-BUTYRIC ACID RESPONSE 5) (Protein IBA RESPONSE 5) (SKP1-interacting partner 33) DISRUPTION PHENOTYPE: Impaired responses to phytohormones such as indole-3-butyric acid, indole-3-acetic acid (auxin), synthetic auxins, auxin transport inhibitors, and abscisic acid (ABA). Plants exhibit long roots and short hypocotyls when grown in the light, with aberrant vascular patterning, increased leaf serration, and reduced accumulation of auxin-inducible genes. {ECO:0000269|PubMed:14630970, ECO:0000269|PubMed:18423007}. A higher proportion of the MPK12 protein isolated from ibr5-3 mutants is dually phosphorylated. The MPK12 protein isolated from ibr5-3 mutants also has higher activity than the MPK12 protein isolated from wild type plants. Long primary root; Few, short lateral roots; Short hypocotyl; Serrated leaves; Abnormal vascular patterning-B. Bartel-2003 FUNCTION: Required for the transduction of auxin and abscisic acid (ABA) signaling pathways. Dephosphorylates and inactivates the MAP kinase MPK12. {ECO:0000269|PubMed:14630970, ECO:0000269|PubMed:18423007, ECO:0000269|PubMed:18832358, ECO:0000269|PubMed:19000167}. 3.1.3.48 28690 Protein-tyrosine-phosphatase IBR5 (EC 3.1.3.48) (Protein INDOLE-3-BUTYRIC ACID RESPONSE 5) (Protein IBA RESPONSE 5) (SKP1-interacting partner 33) nucleus [GO:0005634]; MAP kinase phosphatase activity [GO:0033549]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; abscisic acid-activated signaling pathway [GO:0009738]; auxin-activated signaling pathway [GO:0009734]; intracellular signal transduction [GO:0035556]; negative regulation of MAP kinase activity [GO:0043407]; regulation of organ growth [GO:0046620]; regulation of rate of cell growth [GO:0061388]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733] DEVELOPMENTAL STAGE: During flower development, detected in sepals, anther filaments, and carpels. During germination, levels decline slightly two days after imbibition. {ECO:0000269|PubMed:14630970}. TISSUE SPECIFICITY: Expressed in root tips and vasculature, cotyledons, stems, leaves vasculature and hydathodes, flowers, siliques, and seeds. {ECO:0000269|PubMed:14630970}. locus:2058344; AT2G04550 dual specificity protein phosphatase Os02g0720300 protein (Protein phosphatase-like) (cDNA clone:J033089F02, full insert sequence),Os06g0308100 protein Q6Z648,Q0DCN6 Q6Z648_ORYSJ,Q0DCN6_ORYSJ Os02g0720300 Os02g0720300 OJ1008_D06.16 OSNPB_020720300 P0654B04.1,Os06g0308100 Os06g0308100 OSNPB_060308100 ENOG411DXQM Q9FXC0,A8MSE7 Q9FXC0_ARATH,A8MSE7_ARATH At1g56700 (F25P12.86 protein) (Peptidase C15, pyroglutamyl peptidase I-like protein) (Putative pyrrolidone carboxyl peptidase) (Uncharacterized protein At1g56700),Peptidase C15, pyroglutamyl peptidase I-like protein 24046,20994 At1g56700 (F25P12.86 protein) (Peptidase C15, pyroglutamyl peptidase I-like protein) (Putative pyrrolidone carboxyl peptidase) (Uncharacterized protein At1g56700),Peptidase C15, pyroglutamyl peptidase I-like protein cytosol [GO:0005829]; pyroglutamyl-peptidase activity [GO:0016920]; proteolysis [GO:0006508],cytosol [GO:0005829]; pyroglutamyl-peptidase activity [GO:0016920] locus:2027615; AT1G56700 Pyrrolidone-carboxylate NA NA NA NA NA NA NA ENOG411DXQK CAR5,CAR1,CAR4 Q9LP65,Q9FHP6,Q9LVH4,F4K8L6 CAR5_ARATH,CAR1_ARATH,CAR4_ARATH,F4K8L6_ARATH Protein C2-DOMAIN ABA-RELATED 5,Protein C2-DOMAIN ABA-RELATED 1,Protein C2-DOMAIN ABA-RELATED 4 (C2 domain-containing protein) (AtC2) (GTPase activating protein 1) (AtGAP1),Calcium-dependent lipid-binding (CaLB domain) family protein DISRUPTION PHENOTYPE: When associated with disruption in CAR1, CAR4 and CAR9 genes, reduced sensitivity to abscisic acid (ABA) during seedling establishment and root growth regulation. {ECO:0000269|PubMed:25465408}.,DISRUPTION PHENOTYPE: When associated with disruption in CAR4, CAR5 and CAR9 genes, reduced sensitivity to abscisic acid (ABA) during seedling establishment and root growth regulation. {ECO:0000269|PubMed:25465408}.,DISRUPTION PHENOTYPE: When associated with disruption in CAR1, CAR5 and CAR9 genes, reduced sensitivity to abscisic acid (ABA) during seedling establishment and root growth regulation. {ECO:0000269|PubMed:25465408}. FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (PubMed:25465408). {ECO:0000250|UniProtKB:Q9LVH4, ECO:0000269|PubMed:25465408}.,FUNCTION: Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (PubMed:25465408). Stimulates the GTPase/ATPase activities of YchF1, and regulates its subcellular localization. Promotes tolerance towards salinity stress by limiting the accumulation of reactive oxygen species (ROS) (PubMed:23550829). Promotes resistance to bacterial pathogens (e.g. Xanthomonas oryzae pv. oryzae and P. syringae pv. tomato DC3000) (By similarity). {ECO:0000250|UniProtKB:Q6YWF1, ECO:0000269|PubMed:25465408}. 22755,18842,19900,20073 Protein C2-DOMAIN ABA-RELATED 5,Protein C2-DOMAIN ABA-RELATED 1,Protein C2-DOMAIN ABA-RELATED 4 (C2 domain-containing protein) (AtC2) (GTPase activating protein 1) (AtGAP1),Calcium-dependent lipid-binding (CaLB domain) family protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of defense response to bacterium, incompatible interaction [GO:1902479]; positive regulation of GTPase activity [GO:0043547]; positive regulation of response to salt stress [GO:1901002]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Predominantly expressed in the vascular bundle of the primary root and in the cortex of the root upper part. In lateral roots, detected in epidermis and root tips. {ECO:0000269|PubMed:25465408}. TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:25465408}. locus:2198024;,locus:2088505;,locus:2151684; AT1G48590,AT5G37740,AT3G17980 ADP-ribosylation factor GTPase-activating protein GTPase activating protein 1 (OsGAP1) (G-protein binding protein 1) (OsGPBP1),Os07g0462500 protein Q6YWF1,B9FX35 GAP1_ORYSJ,B9FX35_ORYSJ GAP1 GPBP1 Os02g0327000 LOC_Os02g22130 OsJ_06508 OSJNBb0042G06.10 P0476C12.36,Os07g0462500 OsJ_24148 OSNPB_070462500 FUNCTION: Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). Stimulates the GTPase/ATPase activities of YchF1, and regulates its subcellular localization. Promotes tolerance towards salinity stress by limiting the accumulation of reactive oxygen species (ROS) (PubMed:19086295, PubMed:23550829). Promotes resistance to bacterial pathogens (e.g. Xanthomonas oryzae pv. oryzae and P. syringae pv. tomato DC3000) (PubMed:19086295). {ECO:0000250|UniProtKB:Q9LVH4, ECO:0000269|PubMed:19086295, ECO:0000269|PubMed:23550829}. ENOG411DXQJ Q9C6Z0 FBK17_ARATH F-box/kelch-repeat protein At1g30090 45152 F-box/kelch-repeat protein At1g30090 locus:2198304; AT1G30090 F-box kelch-repeat protein Kelch repeat containing F-box protein family-like (Os07g0153400 protein) Q69NY4 Q69NY4_ORYSJ Os07g0153400 Os07g0153400 OSJNBb0050B07.8 OSNPB_070153400 ENOG411DXQI LEP Q9M644 LEP_ARATH Ethylene-responsive transcription factor LEP (Protein LEAFY PETIOLE) No aberrant adult phenotypes.,Shorter hypocotyls in the light and dark. Light-grown cotyledons are smaller than wild type. Short hypocotyl; Small cotyledons-M. Neff-2005 FUNCTION: Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}. 23681 Ethylene-responsive transcription factor LEP (Protein LEAFY PETIOLE) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; gibberellic acid mediated signaling pathway [GO:0009740]; positive regulation of seed germination [GO:0010030]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in germinating seeds. Present in young shoots, at low levels, especially in leaf primordia and developing leaf blades. Also detected in vascular tissue, mostly in xylem, of young leaves, petioles and hypocotyls. {ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}. locus:2159068; AT5G13910 transcription factor OSJNBb0014D23.10 protein (Os04g0399800 protein) Q7XL79 Q7XL79_ORYSJ Os04g0399800 OSJNBb0014D23.10 OSNPB_040399800 ENOG411DXQH O81028,Q9LMH5 PP171_ARATH,PPR42_ARATH Pentatricopeptide repeat-containing protein At2g26790, mitochondrial,Putative pentatricopeptide repeat-containing protein At1g13800 90360,100519 Pentatricopeptide repeat-containing protein At2g26790, mitochondrial,Putative pentatricopeptide repeat-containing protein At1g13800 intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451] locus:2039558;,locus:2014759; AT2G26790,AT1G13800 Pentatricopeptide repeat-containing protein Os02g0644600 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os11g0659400 protein Q6H644,A0A0P0Y558 Q6H644_ORYSJ,A0A0P0Y558_ORYSJ Os02g0644600 OJ1282_H11.30 OSNPB_020644600 P0030D07.8,Os11g0659400 OSNPB_110659400 ENOG411E1B4 LBD6 O04479 LBD6_ARATH LOB domain-containing protein 6 (Protein ASYMMETRIC LEAVES 2) The mutant fruits displayed the same phenotype as seen in those of as1-1.,asymmetric and lobed rosette leaves leaf edges curl under irregularly.,Rosette leaves are lobed and curled downwards and have shorter petioles. Both the cauline leaves and sepals show serrations at margins.,Phenotype not described.,Mutant leaf petioles displayed clusters of densely cytoplasmic undifferentiated cells on the adaxial side coincident with the development of ectopic outgrowths.,The rosette leaf petioles of the triple mutant plants showed extensive ectopic outgrowth formation in the marginal region and some outgrowths exhibited a strongly radialized character.,The vascular patterning defects in the triple mutant leaf petioles were greatly enhanced compared with those of the parental plants. Altered leaf morphology -Y. Machida-2002 FUNCTION: Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Positively regulates LATERAL ORGAN BOUNDARIES (LOB) within the shoot apex, and the class III HD-ZIP genes REV, PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 1 (AS1) to repress the knox homeobox genes KNAT1, KNAT2, and KNAT6 and the abaxial determinants ARF3, KAN2 and YAB5. May act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA silencing pathway, to regulate the leaf morphogenesis (PubMed:11311158, PubMed:12787254, PubMed:12874130, PubMed:14508003, PubMed:16006579, PubMed:16699177, PubMed:17395603, PubMed:17559509). Required for the binding of AS1 to the KNOX genes (PubMed:23271976). Involved in leaf polarity establishment by functioning cooperatively with RH10 or RID2 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures (PubMed:27334696). {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:12874130, ECO:0000269|PubMed:14508003, ECO:0000269|PubMed:16006579, ECO:0000269|PubMed:16699177, ECO:0000269|PubMed:17395603, ECO:0000269|PubMed:17559509, ECO:0000269|PubMed:23271976, ECO:0000269|PubMed:27334696}. MISCELLANEOUS: Gain-of-function mutants iso1-D and iso-2D (T-DNA tagging) show completely curled up hyponastic rosette leaves. 21710 LOB domain-containing protein 6 (Protein ASYMMETRIC LEAVES 2) nucleoplasm [GO:0005654]; nucleus [GO:0005634]; adaxial/abaxial axis specification [GO:0009943]; petal development [GO:0048441]; polarity specification of adaxial/abaxial axis [GO:0009944]; proximal/distal pattern formation [GO:0009954]; specification of symmetry [GO:0009799] TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves, flowers and adaxial domains of cotyledonary and leaves primordia. {ECO:0000269|PubMed:12040093, ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:17559509}. locus:2034163; AT1G65620 lob domain-containing protein LOB domain-containing protein 6 (Crown rootless-like protein 3) (Protein ASYMMETRIC LEAVES 2),Os05g0417000 protein Q8LQH4,Q6AT73 LBD6_ORYSJ,Q6AT73_ORYSJ LBD6 AS2 CRLL3 Os01g0889400 LOC_Os01g66590 B1099D03.43 OsJ_04355,Os05g0417000 Os05g0417000 OSJNBa0084P24.15 OSNPB_050417000 P0579A05.1 FUNCTION: Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}. ENOG411E1B5 MKK10 Q9LQM8 M2K10_ARATH Mitogen-activated protein kinase kinase 10 (AtMKK10) (MAP kinase kinase 10) (EC 2.7.12.2) R-ATH-110056;R-ATH-112411;R-ATH-2559580;R-ATH-445144;R-ATH-450302;R-ATH-5674135;R-ATH-5674499; 2.7.12.2 34022 Mitogen-activated protein kinase kinase 10 (AtMKK10) (MAP kinase kinase 10) (EC 2.7.12.2) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase kinase activity [GO:0004708]; protein serine/threonine kinase activity [GO:0004674]; regulation of mitotic cell cycle [GO:0007346]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2028301; AT1G32320 Protein tyrosine kinase Os02g0694900 protein A0A0P0VN91 A0A0P0VN91_ORYSJ Os02g0694900 OSNPB_020694900 ENOG411E1B7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os01g0565800 protein Q942Q8 Q942Q8_ORYSJ Os01g0565800 OsJ_02255 OSJNBb0049O23.27 OSNPB_010565800 P0697C12.23 ENOG411E1B1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q69IV0,Q69JH2 Q69IV0_ORYSJ,Q69JH2_ORYSJ P0498F03.1 Os09g0518200 OSNPB_090518200 P0217C03.8,Os09g0518000 Os09g0518000 OSNPB_090518000 P0217C03.6 ENOG411E1B2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DCD Os06g0227200 protein (cDNA clone:J013089B21, full insert sequence),Os06g0227200 protein (Fragment) Q67WK6,A0A0P0WU71 Q67WK6_ORYSJ,A0A0P0WU71_ORYSJ Os06g0227200 Os06g0227200 OsJ_20673 OSNPB_060227200 P0425F05.13 P0690H04.37,Os06g0227200 OSNPB_060227200 ENOG411DZ99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0818500 protein (cDNA clone:J013098J11, full insert sequence) B7ED76 B7ED76_ORYSJ Os02g0818500 OSNPB_020818500 ENOG411DZ98 Q8W592,A0A1P8APK3,F4HQH8 Q8W592_ARATH,A0A1P8APK3_ARATH,F4HQH8_ARATH At1g01080/T25K16_7 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Ribonucleoprotein, putative),RNA-binding (RRM/RBD/RNP motifs) family protein 32576,31723,32675 At1g01080/T25K16_7 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Ribonucleoprotein, putative),RNA-binding (RRM/RBD/RNP motifs) family protein intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]; RNA binding [GO:0003723],RNA binding [GO:0003723],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; nucleus [GO:0005634]; mRNA binding [GO:0003729] locus:2200975; AT1G01080 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DZ91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DZ90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0134600 protein (Putative Systemin receptor SR160) (cDNA, clone: J065022K23, full insert sequence) Q6ZDZ0 Q6ZDZ0_ORYSJ Os07g0134600 OsJ_23000 OSNPB_070134600 P0507H12.25 ENOG411DZ94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Leucine zipper-containing protein-like (Os06g0183600 protein),Os01g0689200 protein Q5SML2,Q5N7K4 Q5SML2_ORYSJ,Q5N7K4_ORYSJ Os06g0183600 OSJNBb0036B04.20 OSNPB_060183600 P0554A06.4,Os01g0689200 OsJ_03067 OSNPB_010689200 P0519D04.43 ENOG411DZ96 Q8W3M7,F4I9R1 Y4598_ARATH,F4I9R1_ARATH Uncharacterized protein At4g06598,Basic-leucine zipper (BZIP) transcription factor family protein 29218,42101 Uncharacterized protein At4g06598,Basic-leucine zipper (BZIP) transcription factor family protein nucleus [GO:0005634]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893] locus:2196225; AT4G06598,AT1G58110 transcription factor BZIP transcription factor family protein, expressed (Os11g0218000 protein) (cDNA clone:J023004I18, full insert sequence) Q2R8T2 Q2R8T2_ORYSJ LOC_Os11g11100 Os11g0218000 OSNPB_110218000 ENOG411DZ9I Q9SKA3 Q9SKA3_ARATH C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Highly similar to phosphoribosylanthranilate transferase) 118365 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Highly similar to phosphoribosylanthranilate transferase) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2009492; AT1G22610 domain-containing protein OSJNBb0020J19.7 protein (Os04g0691800 protein) Q7XKA3 Q7XKA3_ORYSJ Os04g0691800 OSJNBb0020J19.7 OSNPB_040691800 ENOG411DZ9H Q9M9X2 Q9M9X2_ARATH F18C1.6 protein (RING/U-box protein) (Uncharacterized protein At3g05670) 98786 F18C1.6 protein (RING/U-box protein) (Uncharacterized protein At3g05670) metal ion binding [GO:0046872] locus:2078092; AT3G05670 PHD-finger Os03g0302200 protein (PHD-finger family protein, expressed) Q10MN1 Q10MN1_ORYSJ LOC_Os03g19020 Os03g0302200 OsJ_10531 OSNPB_030302200 ENOG411DZ9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation H( ) antiporter NA NA NA NA NA NA NA ENOG411DZ9J emb2411 A0A1P8ASV1,A0A1P8ASU0,A0A1P8ASY1,F4HXR5,F4HXR6 A0A1P8ASV1_ARATH,A0A1P8ASU0_ARATH,A0A1P8ASY1_ARATH,F4HXR5_ARATH,F4HXR6_ARATH DNA replication helicase Embryo defective; Globular-D. Meinke-2003 R-ATH-174437;R-ATH-5693616;R-ATH-69166; 146946,116103,147286,143249,145531 DNA replication helicase 5'-flap endonuclease activity [GO:0017108]; helicase activity [GO:0004386]; single-stranded DNA-dependent ATPase activity [GO:0043142]; DNA replication, Okazaki fragment processing [GO:0033567],nucleus [GO:0005634]; 5'-flap endonuclease activity [GO:0017108]; helicase activity [GO:0004386]; single-stranded DNA-dependent ATPase activity [GO:0043142]; cellular response to DNA damage stimulus [GO:0006974]; DNA replication, Okazaki fragment processing [GO:0033567]; meristem maintenance [GO:0010073] locus:2025610; AT1G08840 DNA replication factor Dna2 Os04g0588200 protein A0A0N7KJL1 A0A0N7KJL1_ORYSJ Os04g0588200 OSNPB_040588200 ENOG411DZ9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity) Casparian strip membrane protein 4 (OsCASP4),Casparian strip membrane protein 5 (OsCASP5),Casparian strip membrane protein 7 (OsCASP7),CASP-like protein (Fragment) Q6Z2U5,Q7XUV7,Q6EP58,A0A0P0WB66 CASP4_ORYSJ,CASP5_ORYSJ,CASP7_ORYSJ,A0A0P0WB66_ORYSJ Os02g0743900 LOC_Os02g51010 OJ1734_E02.23,Os04g0460400 LOC_Os04g38690 OsJ_014458 OSJNBa0072F16.8,Os02g0578366 LOC_Os02g36845 B1267B06.3 B1342F01.34 OsJ_07255,Os04g0460400 OSNPB_040460400 FUNCTION: Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). {ECO:0000250}. ENOG411DZ9C CHI3 Q8VZW3 CFI3_ARATH Probable chalcone--flavonone isomerase 3 (Chalcone isomerase 3) (EC 5.5.1.6) (Chalcone isomerase-like 1) FUNCTION: Involved in anthocyanin biosynthesis. {ECO:0000305|PubMed:15807784}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT5G05270-MONOMER; 5.5.1.6 23332 Probable chalcone--flavonone isomerase 3 (Chalcone isomerase 3) (EC 5.5.1.6) (Chalcone isomerase-like 1) endoplasmic reticulum [GO:0005783]; chalcone isomerase activity [GO:0045430]; flavonoid biosynthetic process [GO:0009813]; response to karrikin [GO:0080167] locus:2153539; AT5G05270 isomerase Chalcone-flavonone isomerase family protein Q2RBC7,Q2QYK6 Q2RBC7_ORYSJ,Q2QYK6_ORYSJ Os11g0116300 LOC_Os11g02440 Os11g0116300 OSNPB_110116300,LOC_Os12g02370 Os12g0115700 OSNPB_120115700 ENOG411DZ9E A0A1P8BCN3,A0A1P8BCL9,A0A1P8BCM0,A0A1P8BCM7,A0A1P8BCL6,A0A1P8BCM5,F4JZA2,F4JZA0,F4JZA1 A0A1P8BCN3_ARATH,A0A1P8BCL9_ARATH,A0A1P8BCM0_ARATH,A0A1P8BCM7_ARATH,A0A1P8BCL6_ARATH,A0A1P8BCM5_ARATH,F4JZA2_ARATH,F4JZA0_ARATH,F4JZA1_ARATH TLC ATP/ADP transporter,ADP,ATP carrier protein 49681,42993,38594,41627,50548,55590,50573,55615,53582 TLC ATP/ADP transporter,ADP,ATP carrier protein integral component of membrane [GO:0016021],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATP:ADP antiporter activity [GO:0005471] locus:2153489; AT5G05310 TLC ATP/ADP transporter ADP,ATP carrier protein,Os11g0112900 protein Q2QYN3,A0A0P0XY18 Q2QYN3_ORYSJ,A0A0P0XY18_ORYSJ Os12g0112300 LOC_Os12g02100 Os12g0112300 OsJ_34985 OSNPB_120112300,Os11g0112900 OSNPB_110112900 ENOG411DZ9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin carboxyl-terminal hydrolase family 1 Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12) Q6ETK2 Q6ETK2_ORYSJ Os02g0180100 OSNPB_020180100 P0544B02.32 ENOG411DZ9G PCMP-H80 Q9LXY5 PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550 64887 Pentatricopeptide repeat-containing protein At3g56550 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2102514; AT3G56550 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DZ9Y ATJ10 Q8GYX8,A0A1P8B0U4,Q9LPU3,Q9T024,Q93ZH5,Q9SJS8,A0A1P8B0Z0,F4HWD5 DNJ10_ARATH,A0A1P8B0U4_ARATH,Q9LPU3_ARATH,Q9T024_ARATH,Q93ZH5_ARATH,Q9SJS8_ARATH,A0A1P8B0Z0_ARATH,F4HWD5_ARATH Chaperone protein dnaJ 10 (AtDjC10) (AtJ10),DNAJ heat shock N-terminal domain-containing protein,DNAJ heat shock N-terminal domain-containing protein (T22I11.9 protein) (Uncharacterized protein At1g21080),AT4g39150/T22F8_50 (DNAJ heat shock N-terminal domain-containing protein) (DnaJ-like protein),At1g21080/T22I11_9 (DNAJ heat shock N-terminal domain-containing protein),DNAJ heat shock N-terminal domain-containing protein (Putative DnaJ protein) FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 44664,39679,43924,38462,34399,38838,37051,44878 Chaperone protein dnaJ 10 (AtDjC10) (AtJ10),DNAJ heat shock N-terminal domain-containing protein,DNAJ heat shock N-terminal domain-containing protein (T22I11.9 protein) (Uncharacterized protein At1g21080),AT4g39150/T22F8_50 (DNAJ heat shock N-terminal domain-containing protein) (DnaJ-like protein),At1g21080/T22I11_9 (DNAJ heat shock N-terminal domain-containing protein),DNAJ heat shock N-terminal domain-containing protein (Putative DnaJ protein) cytosol [GO:0005829],Golgi apparatus [GO:0005794] locus:2030101;,locus:2136378;,locus:2050120;,locus:2199622; AT1G76700,AT1G21080,AT4G39150,AT2G21510 chaperone protein dnaJ Os05g0543800 protein (cDNA clone:J013140A01, full insert sequence),Os09g0493800 protein (cDNA clone:001-123-F06, full insert sequence),DnaJ protein family-like (Os08g0522600 protein) (cDNA clone:001-119-E12, full insert sequence),Os05g0543700 protein (Putative DnaJ) (Putative DnaJ protein) (cDNA clone:001-010-C07, full insert sequence) (cDNA clone:J023077E11, full insert sequence),Os05g0543800 protein Q65X45,Q0J0L7,Q7F1J8,Q65X46,A0A0P0WQI1 Q65X45_ORYSJ,Q0J0L7_ORYSJ,Q7F1J8_ORYSJ,Q65X46_ORYSJ,A0A0P0WQI1_ORYSJ Os05g0543800 Os05g0543800 OJ1206_C08.5 OJ1288_A07.14 OSNPB_050543800,Os09g0493800 Os09g0493800 OsJ_29869 OSNPB_090493800,OJ1081_B12.119 Os08g0522600 OJ1186_G01.5 OSNPB_080522600,Os05g0543700 Os05g0543700 OJ1206_C08.4 OJ1288_A07.13 OSNPB_050543700,Os05g0543800 OSNPB_050543800 ENOG411DZ9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0645701 protein,Os07g0644700 protein (Fragment),Os07g0644900 protein (Fragment) Q7EYL2,A0A0P0X9D1,A0A0P0X9M7 Q7EYL2_ORYSJ,A0A0P0X9D1_ORYSJ,A0A0P0X9M7_ORYSJ P0503D09.107 Os07g0645701 OSNPB_070645701,Os07g0644700 OSNPB_070644700,Os07g0644900 OSNPB_070644900 ENOG411DZ9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase 7-like NA NA NA NA NA NA NA ENOG411DZ9Q A0A1P8AZJ3,A0A1P8AZK2,A0A1P8AZI2,A0A1P8AZI4,A0A1P8AZJ4,A0A1P8AZJ2,A0A1P8AZI3,A0A1P8AZI1,F4ITX5 A0A1P8AZJ3_ARATH,A0A1P8AZK2_ARATH,A0A1P8AZI2_ARATH,A0A1P8AZI4_ARATH,A0A1P8AZJ4_ARATH,A0A1P8AZJ2_ARATH,A0A1P8AZI3_ARATH,A0A1P8AZI1_ARATH,F4ITX5_ARATH Cytochrome C oxidase subunit 39137,43008,38560,45190,55031,52445,39845,40422,51868 Cytochrome C oxidase subunit integral component of membrane [GO:0016021] locus:2040369; AT2G38780 NA Os05g0381500 protein (Fragment) A0A0N7KKP2 A0A0N7KKP2_ORYSJ Os05g0381500 OSNPB_050381500 ENOG411DZ9P F4J4Q8 F4J4Q8_ARATH Transmembrane protein 67910 Transmembrane protein cytosolic large ribosomal subunit [GO:0022625]; integral component of membrane [GO:0016021]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412] locus:505006324; AT3G01175 Protein of unknown function (DUF1666) NA NA NA NA NA NA NA ENOG411DZ9S MAG2L Q8GXP1 MAG2L_ARATH RINT1-like protein MAG2L (Protein MAIGO 2 homolog) (Protein MAIGO 2-like) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23025793}. FUNCTION: May function in the anterograde transport of protein from the endoplasmic reticulum (ER) to the Golgi complex and in the retrograde transport from the Golgi complex to the ER. {ECO:0000269|PubMed:23025793}. 92352 RINT1-like protein MAG2L (Protein MAIGO 2 homolog) (Protein MAIGO 2-like) COPI-coated Golgi to ER transport vesicle [GO:0030142]; COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi vesicle transport [GO:0048193]; protein transport [GO:0015031] TISSUE SPECIFICITY: Highly expressed in dry seeds. Expressed at low levels in roots, rosette and cauline leaves, stems and flowers. {ECO:0000269|PubMed:23025793}. locus:2201771; AT1G08400 RINT-1 / TIP-1 family Os07g0686700 protein A0A0P0XAK8 A0A0P0XAK8_ORYSJ Os07g0686700 OSNPB_070686700 ENOG411DZ9R ORP1A,ORP1C,ORP1B O80866,Q8L751,Q8S8P9,F4JFW6 ORP1A_ARATH,ORP1C_ARATH,ORP1B_ARATH,F4JFW6_ARATH Oxysterol-binding protein-related protein 1A (OSBP-related protein 1A),Oxysterol-binding protein-related protein 1C (OSBP-related protein 1C),Oxysterol-binding protein-related protein 1B (OSBP-related protein 1B),OSBP(Oxysterol binding protein)-related protein 1C FUNCTION: May be involved in the transport of sterols. {ECO:0000250}. R-ATH-192105; 87319,92764,56556,92635 Oxysterol-binding protein-related protein 1A (OSBP-related protein 1A),Oxysterol-binding protein-related protein 1C (OSBP-related protein 1C),Oxysterol-binding protein-related protein 1B (OSBP-related protein 1B),OSBP(Oxysterol binding protein)-related protein 1C lipid binding [GO:0008289]; lipid transport [GO:0006869] TISSUE SPECIFICITY: Expressed in roots and at lower levels in stems. {ECO:0000269|PubMed:16897474}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and pollen. {ECO:0000269|PubMed:16897474}.,TISSUE SPECIFICITY: Expressed at low levels in flowers. {ECO:0000269|PubMed:16897474}. locus:2052801;,locus:2132492;,locus:2052816; AT2G31020,AT4G08180,AT2G31030 oxysterol-binding protein-related protein 1C-like NA NA NA NA NA NA NA ENOG411DZ9U CYCL1-1,RCY1 Q8RWV3,A0A1P8AZE0 CCL11_ARATH,A0A1P8AZE0_ARATH Cyclin-L1-1 (CycL1;1) (Arginine-rich cyclin 1) (AtRCY1) (Protein MODIFIER OF SNC1 12),Arginine-rich cyclin 1 DISRUPTION PHENOTYPE: Lethal, due to male sterility. {ECO:0000269|PubMed:22248079, ECO:0000269|PubMed:24469829}. FUNCTION: Cognate cyclin for CDKG1. Required for synapsis and male meiosis, and for the proper splicing of specific resistance (R) genes. Involved in regulation of DNA methylation and transcriptional silencing. {ECO:0000269|PubMed:22248079, ECO:0000269|PubMed:23524848, ECO:0000269|PubMed:24469829}. 47555,33976 Cyclin-L1-1 (CycL1;1) (Arginine-rich cyclin 1) (AtRCY1) (Protein MODIFIER OF SNC1 12),Arginine-rich cyclin 1 cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; protein kinase binding [GO:0019901]; cell division [GO:0051301]; meiotic cell cycle [GO:0051321]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of transcription, DNA-templated [GO:0006355]; response to salt stress [GO:0009651],protein kinase binding [GO:0019901]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]; regulation of transcription, DNA-templated [GO:0006355] locus:2066185; AT2G26430 regulation of cyclin-dependent protein serine/threonine kinase activity Cyclin-L1-1 (CycL1;1) Q9AS36 CCL11_ORYSJ CYCL1-1 Os01g0377500 LOC_Os01g27940 OsJ_01844 P0416G11.14 ENOG411DZ9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain-containing protein NAC domain-containing protein 2 (ONAC002) (OsNAC19) (Protein STRESS-RESPONSIVE NAC 1) Q75HE5 NAC2_ORYSJ NAC002 NAC19 SNAC1 Os03g0815100 LOC_Os03g60080 OsJ_13092 OSJNBa0024F18.3 FUNCTION: Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. MISCELLANEOUS: Plants overexpressing NAC002 exhibit improved tolerance to drought and salt stresses. {ECO:0000269|PubMed:16924117}. ENOG411DZ9W CDSP32 Q9SGS4 CDSP_ARATH Thioredoxin-like protein CDSP32, chloroplastic (Chloroplastic drought-induced stress protein of 32 KDa) (AtCDSP32) FUNCTION: Probable thiol-disulfide oxidoreductase involved in resistance to oxidative stress. May participate in the reduction of alkyl hydroperoxides derived from oxidative stress by acting as a physiological electron donor to the BAS1 peroxiredoxin. May regenerate methionine sulfoxide reductase B1 (MSRB1) activity through sulfenic acid reduction. {ECO:0000269|PubMed:20236937}. 33685 Thioredoxin-like protein CDSP32, chloroplastic (Chloroplastic drought-induced stress protein of 32 KDa) (AtCDSP32) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; response to oxidative stress [GO:0006979]; response to water deprivation [GO:0009414] locus:2199803; AT1G76080 thioredoxin-like protein CDSP32 Thioredoxin-like protein CDSP32, chloroplastic (Chloroplastic drought-induced stress protein of 32 KDa) (OsCDSP32) Q84NN4 CDSP_ORYSJ CDSP32 Os07g0476900 LOC_Os07g29410 OsJ_24223 P0640E12.112 FUNCTION: Thiol-disulfide oxidoreductase that may participate in various redox reactions. May act as electron donor to the BAS1 peroxiredoxin. Possesses low insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:16891402}. ENOG411DZ9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411DW10 ECR Q9M2U2 TECR_ARATH Very-long-chain enoyl-CoA reductase (EC 1.3.1.93) (Enoyl-CoA reductase) (AtECR) (Protein ECERIFERUM 10) (Synaptic glycoprotein SC2-like protein) DISRUPTION PHENOTYPE: Abnormal organ morphology and stem glossiness. {ECO:0000269|PubMed:15829606}. plants exhibit abnormal organ morphology and stem glossiness Downward-bending cotyledons; Dwarf; Glossy, thin, zig-zag inflorescences; Small, crinkled leaves; Fused floral buds; Short, crooked stamen filaments; Reduced male fertility-L. Kunst-2005 FUNCTION: Catalyzes the last of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of 2 carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme reduces the trans-2,3-enoyl-CoA fatty acid intermediate to an acyl-CoA that can be further elongated by entering a new cycle of elongation. Thereby, it participates in the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. Required for the elongation of fatty acids precursors of sphingolipids, storage lipids and cuticular waxes. {ECO:0000269|PubMed:14673020, ECO:0000269|PubMed:15829606}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. {ECO:0000305|PubMed:14673020, ECO:0000305|PubMed:15829606}. ARA:AT3G55360-MONOMER;MetaCyc:AT3G55360-MONOMER; R-ATH-75876; 1.3.1.93; 1.3.1.93 35724 Very-long-chain enoyl-CoA reductase (EC 1.3.1.93) (Enoyl-CoA reductase) (AtECR) (Protein ECERIFERUM 10) (Synaptic glycoprotein SC2-like protein) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; fatty acid elongase complex [GO:0009923]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; fatty acid elongase activity [GO:0009922]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; cuticle development [GO:0042335]; sphingolipid metabolic process [GO:0006665]; trichome branching [GO:0010091]; trichome papilla formation [GO:1905499]; very long-chain fatty acid biosynthetic process [GO:0042761]; wax biosynthetic process [GO:0010025] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Detected in mature seeds. {ECO:0000269|PubMed:14673020}. locus:2099911; AT3G55360 reductase Os01g0150000 protein (Putative synaptic glycoprotein SC2) (cDNA clone:006-201-F04, full insert sequence),Os01g0150000 protein (Fragment) Q5ZED1,A0A0P0UY99 Q5ZED1_ORYSJ,A0A0P0UY99_ORYSJ P0434B04.35-1 P0009G03.2-1 Os01g0150000 OSNPB_010150000,Os01g0150000 OSNPB_010150000 ENOG411DW12 HSFB4 Q9C635 HSFB4_ARATH Heat stress transcription factor B-4 (AtHsfB4) (AtHsf-02) FUNCTION: Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 39615 Heat stress transcription factor B-4 (AtHsfB4) (AtHsf-02) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; asymmetric cell division [GO:0008356]; transcription, DNA-templated [GO:0006351] locus:2825726; AT1G46264 heat stress transcription factor Putative heat stress transcription factor B-4a (Heat stress transcription factor 20) (OsHsf-20),Heat stress transcription factor B-4c (Heat stress transcription factor 22) (OsHsf-22) Q6Z9R8,Q67U94 HFB4A_ORYSJ,HFB4C_ORYSJ HSFB4A HSF20 Os08g0471000 LOC_Os08g36700 P0461F06.21,HSFB4C HSF22 Os09g0455200 LOC_Os09g28200 P0025H07.19 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DW13 Q9SY70 Q9SY70_ARATH At1g10280 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (F14N23.16) (Glycosyltransferase) 47251 At1g10280 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (F14N23.16) (Glycosyltransferase) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2012748; AT1G10280 dna binding protein Os08g0110400 protein (cDNA clone:J013146H09, full insert sequence) Q6ZC58 Q6ZC58_ORYSJ Os08g0110400 Os08g0110400 OSNPB_080110400 P0007D08.32 ENOG411DW14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0668500 protein,Os03g0295666 protein A0A0P0X9Z0,A0A0P0VWD7 A0A0P0X9Z0_ORYSJ,A0A0P0VWD7_ORYSJ Os07g0668500 OSNPB_070668500,Os03g0295666 OSNPB_030295666 ENOG411DW15 Q94AJ5,A0A1P8ANI3 PGLR5_ARATH,A0A1P8ANI3_ARATH Probable polygalacturonase At1g80170 (PG) (EC 3.2.1.15) (Pectinase At1g80170),Pectin lyase-like superfamily protein ARA:AT1G80170-MONOMER; 3.2.1.15 48172,35806 Probable polygalacturonase At1g80170 (PG) (EC 3.2.1.15) (Pectinase At1g80170),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed in young, mature and dehiscing anthers. Found in stems, but not in roots or in abscission zone of floral organs. {ECO:0000269|PubMed:17010199, ECO:0000269|PubMed:17928369}. locus:2016314; AT1G80170 polygalacturonase Os05g0542800 protein (cDNA clone:001-203-H08, full insert sequence) (cDNA clone:J023088D14, full insert sequence),Os05g0542800 protein Q65XN6,Q65XN5 Q65XN6_ORYSJ,Q65XN5_ORYSJ Os05g0542800 OJ1288_A07.4 OSNPB_050542800,Os05g0542800 Os05g0542800 OJ1288_A07.4 OSNPB_050542800 ENOG411DW16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os02g0579000 protein Q0E046 Q0E046_ORYSJ Os02g0579000 Os02g0579000 OSNPB_020579000 ENOG411DW17 T21F11.5 Q9M8M9,Q9LMQ3 Q9M8M9_ARATH,Q9LMQ3_ARATH S15/NS1, RNA-binding protein (Uncharacterized protein T21F11.5),At1g15810/F7H2_23 (F7H2.15 protein) (S15/NS1, RNA-binding protein) 47401,47329 S15/NS1, RNA-binding protein (Uncharacterized protein T21F11.5),At1g15810/F7H2_23 (F7H2.15 protein) (S15/NS1, RNA-binding protein) chloroplast stroma [GO:0009570]; plastid small ribosomal subunit [GO:0000312]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2198918;,locus:2036229; AT1G80620,AT1G15810 ribosomal protein S15 Os02g0803200 protein (Ribosomal protein S15-like) (cDNA clone:001-115-A06, full insert sequence),Os06g0176150 protein (Os06g0177250 protein) Q69SJ7,A0A0P0WTS1 Q69SJ7_ORYSJ,A0A0P0WTS1_ORYSJ Os02g0803200 Os02g0803200 OSNPB_020803200 P0689B12.23,Os06g0177250 Os06g0176150 OSNPB_060176150 OSNPB_060177250 ENOG411DW18 MRS2-3 Q9LJN2 MRS23_ARATH Magnesium transporter MRS2-3 (Magnesium Transporter 4) (AtMGT4) FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}. MISCELLANEOUS: Has the ability to complement a mutant in yeast lacking magnesium transport capability. R-ATH-5223345; 53458 Magnesium transporter MRS2-3 (Magnesium Transporter 4) (AtMGT4) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19966073}. locus:2091176; AT3G19640 magnesium transporter Magnesium transporter MRS2-F,Os01g0908500 protein (Fragment) Q8L4S2,A0A0P0VBT4 MRS2F_ORYSJ,A0A0P0VBT4_ORYSJ MRS2-F Os01g0908500 LOC_Os01g68040 B1417F08.35 OsJ_04478 P0456E05.8 P0497A05.17,Os01g0908500 OSNPB_010908500 FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}. ENOG411DW19 BRL1,BRL3 Q9ZWC8,Q9LJF3 BRL1_ARATH,BRL3_ARATH Serine/threonine-protein kinase BRI1-like 1 (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1),Receptor-like protein kinase BRI1-like 3 (EC 2.7.10.1) (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) FUNCTION: Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation. {ECO:0000269|PubMed:15469497, ECO:0000269|PubMed:15486337}.,FUNCTION: Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation. {ECO:0000269|PubMed:15486337}. 2.7.11.1,2.7.10.1; 2.7.11.1 127424,126661 Serine/threonine-protein kinase BRI1-like 1 (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1),Receptor-like protein kinase BRI1-like 3 (EC 2.7.10.1) (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; steroid binding [GO:0005496],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; steroid binding [GO:0005496]; transmembrane receptor protein tyrosine kinase activity [GO:0004714] TISSUE SPECIFICITY: Predominantly expressed in vascular tissues. From 7 day old seedlings, it is expressed in the columella cells of the root tip, in the vascular initials in the meristematic region of the root and in vascular tissues. After germination, it is expressed in the stele cell and in the early differentiation zone of the root, where the expression continues from the root to the hypocotyls and cotyledons following the midvein. In mature plants, it is expressed in the vasculature of the leaf, predominantly in the midvein, and in the vascular bundles of inflorescence stems. Localizes to procambial cells of the vascular bundles located between the differentiating xylem and the phloem. {ECO:0000269|PubMed:15469497, ECO:0000269|PubMed:15486337}.,TISSUE SPECIFICITY: Predominantly expressed in vascular tissues. Expressed only during postembryonic development with a very discrete pattern of expression, preferentially in the two protophloem cell files at the elongation zone of the root. The expression in these two cell files attenuates as the phloem cells differentiate in the upper root. In cotyledons and leaves, it is expressed in phloem cells, starting at the cotyledons and shoot apex, moving toward the basal part of the leaves, where the expression is weak. Expressed in the secondary and tertiary veins and in the upper part of the cotyledons and leaves. Weakly or not expressed in the inflorescence stems. Has some complementary expression with BRL1. {ECO:0000269|PubMed:15486337}. locus:2020457;,locus:2092810; AT1G55610,AT3G13380 kinase BRI1-like Brassinosteroid LRR receptor kinase BRL1 (EC 2.7.11.1) (BRI1-like receptor kinase 1) Q69JN6 BRL1_ORYSJ BRL1 Os09g0293500 LOC_Os09g12240 B1043F11.38 FUNCTION: May be involved in brassenosteroid (BR) perception in roots. {ECO:0000269|PubMed:16407447}. ENOG411DW1P SFH11,MNJ7.10 F4JYJ3,A0A1P8BCZ1,A0A1P8BCX9,A0A1P8BCX6 SFH11_ARATH,A0A1P8BCZ1_ARATH,A0A1P8BCX9_ARATH,A0A1P8BCX6_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 (Protein SEC FOURTEEN HOMOLOGS 11) (AtSFH11),Sec14p-like phosphatidylinositol transfer family protein FUNCTION: Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}. 42935,36344,43066,39483 Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 (Protein SEC FOURTEEN HOMOLOGS 11) (AtSFH11),Sec14p-like phosphatidylinositol transfer family protein Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; protein transport [GO:0015031] locus:2169038; AT5G47510 sec14 cytosolic Os07g0456500 protein A0A0P0X5P6 A0A0P0X5P6_ORYSJ Os07g0456500 OSNPB_070456500 ENOG411DW1Q FIGL1 F4JEX5 FIGL1_ARATH ATPase family AAA domain-containing protein FIGL1 (AAA-ATPase FIDGETIN-LIKE 1) (EC 3.6.4.-) FUNCTION: Involved in DNA double-strand break (DBS) repair via homologous recombination (HR). Limits class II meiotic crossover (CO) formation by regulating the invasion step of meiotic HR. May counteract DMC1 and RAD51-mediated inter-homolog strand invasion to limit CO formation. Functions independently of FANCM. {ECO:0000269|PubMed:26161528}. 3.6.4.- 75348 ATPase family AAA domain-containing protein FIGL1 (AAA-ATPase FIDGETIN-LIKE 1) (EC 3.6.4.-) nucleus [GO:0005634]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; regulation of double-strand break repair via homologous recombination [GO:0010569] locus:2092025; AT3G27120 fidgetin-like protein 1-like Os12g0443800 protein (Fragment) A0A0P0Y9S8 A0A0P0Y9S8_ORYSJ Os12g0443800 OSNPB_120443800 ENOG411DW1R BHLH76,BHLH49,CIB5 Q9C670,Q9CAA9,A0A1P8AVX7 BH076_ARATH,BH049_ARATH,A0A1P8AVX7_ARATH Transcription factor bHLH76 (Basic helix-loop-helix protein 76) (AtbHLH76) (bHLH 76) (Protein CRYPTOCHROME INTERACTING BASIC-HELIX-LOOP-HELIX 5) (Transcription factor EN 83) (bHLH transcription factor bHLH076),Transcription factor bHLH49 (Basic helix-loop-helix protein 49) (AtbHLH49) (bHLH 49) (Protein ACTIVATOR FOR CELL ELONGATION 1) (Transcription factor EN 82) (bHLH transcription factor bHLH049),Cryptochrome-interacting basic-helix-loop-helix 5 cib1 or cib5 single mutant shows no obvious phenotype and cib1cib5 double mutant showed a mild but statistically significant delay of flowering under a photoperiodic inductive condition (plants were grown in short-day photoperiod (9h light/15h dark) for 20 days and transfered to long-day photoperiod (16h light/ 8h dark) for 4 days and removed back to short-day to continue grow until flowering. FUNCTION: Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.,FUNCTION: Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. MISCELLANEOUS: Plants over-expressing CIB5 show increased hypocotyl and cotyledon lengths and increased flower size. {ECO:0000305|PubMed:23161888}.,MISCELLANEOUS: Plants over-expressing BHLH49 show increased hypocotyl and cotyledon lengths and increased flower size. {ECO:0000305|PubMed:23161888}. 43239,52388,41324 Transcription factor bHLH76 (Basic helix-loop-helix protein 76) (AtbHLH76) (bHLH 76) (Protein CRYPTOCHROME INTERACTING BASIC-HELIX-LOOP-HELIX 5) (Transcription factor EN 83) (bHLH transcription factor bHLH076),Transcription factor bHLH49 (Basic helix-loop-helix protein 49) (AtbHLH49) (bHLH 49) (Protein ACTIVATOR FOR CELL ELONGATION 1) (Transcription factor EN 82) (bHLH transcription factor bHLH049),Cryptochrome-interacting basic-helix-loop-helix 5 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of flower development [GO:0009911]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2028804;,locus:2205420; AT1G26260,AT1G68920 Transcription factor BHLH-transcription factor (Os09g0474100 protein) (TA1 protein-like) (cDNA clone:J023133H05, full insert sequence),Os06g0275600 protein (Putative TA1 protein),Os06g0275600 protein (Fragment) Q69JJ6,Q5VR96,A0A0P0WVP1 Q69JJ6_ORYSJ,Q5VR96_ORYSJ,A0A0P0WVP1_ORYSJ Os09g0474100 Os09g0474100 OSJNBa0026C08.22 OSNPB_090474100,P0038C05.31-1 Os06g0275600 OSNPB_060275600,Os06g0275600 OSNPB_060275600 ENOG411DW1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain Os08g0523100 protein,Os08g0522700 protein (Putative speckle-type POZ protein(Spop)),Os08g0523000 protein (Putative speckle-type POZ protein(Spop)),Os08g0523200 protein (Putative speckle-type POZ protein(Spop)),Os08g0523400 protein (Putative speckle-type POZ protein(Spop)),Os08g0523700 protein (Putative speckle-type POZ protein(Spop)),Os08g0523800 protein,Os08g0516550 protein (Fragment),Os03g0686050 protein,Os08g0523850 protein,Os08g0516200 protein,Os08g0516500 protein (Fragment),Os08g0523633 protein,Os08g0516300 protein B9G1V0,Q7F1J7,Q7F1J5,Q7F1J2,Q84QP9,Q84QP7,Q84QP5,A0A0P0XHT9,A0A0P0W204,A0A0P0XI87,A0A0P0XHU1,A0A0P0XHP7,A0A0P0XIG9,A0A0P0XHY3 B9G1V0_ORYSJ,Q7F1J7_ORYSJ,Q7F1J5_ORYSJ,Q7F1J2_ORYSJ,Q84QP9_ORYSJ,Q84QP7_ORYSJ,Q84QP5_ORYSJ,A0A0P0XHT9_ORYSJ,A0A0P0W204_ORYSJ,A0A0P0XI87_ORYSJ,A0A0P0XHU1_ORYSJ,A0A0P0XHP7_ORYSJ,A0A0P0XIG9_ORYSJ,A0A0P0XHY3_ORYSJ Os08g0523100 OsJ_27984 OSNPB_080523100,OJ1081_B12.120 Os08g0522700 OJ1186_G01.6 OSNPB_080522700,OJ1081_B12.125 Os08g0523000 OJ1186_G01.11 OSNPB_080523000,OJ1081_B12.133 Os08g0523200 OJ1186_G01.19 OsJ_27985 OSNPB_080523200,OJ1081_B12.135 Os08g0523400 OJ1186_G01.21 OsJ_27987 OSNPB_080523400,OJ1081_B12.140 Os08g0523700 OJ1186_G01.26 OsJ_27992 OSNPB_080523700,OJ1081_B12.142 Os08g0523800 OJ1186_G01.28 OSNPB_080523800,Os08g0516550 OSNPB_080516550,Os03g0686050 OSNPB_030686050,Os08g0523850 OSNPB_080523850,Os08g0516200 OSNPB_080516200,Os08g0516500 OSNPB_080516500,Os08g0523633 OSNPB_080523633,Os08g0516300 OSNPB_080516300 ENOG411DW1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTP1/OBG Probable GTP-binding protein OBGC2 Q851Q6 OBGC2_ORYSJ Os03g0799700 LOC_Os03g58540 OSJNBa0052F07.17 FUNCTION: May bind GTP and have GTPase activity. {ECO:0000250}. ENOG411DW1U FOLD1 A2RVV7 FOLD1_ARATH Bifunctional protein FolD 1, mitochondrial [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] DISRUPTION PHENOTYPE: No visible phenotype. Fold1, puru1 and puru2 triple mutant shows no photorespiratory phenotype. {ECO:0000269|PubMed:18628352}. FUNCTION: Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate. {ECO:0000250}. PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. ARA:AT2G38660-MONOMER; R-ATH-196757; 1.5.1.5; 3.5.4.9 38048 Bifunctional protein FolD 1, mitochondrial [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] cytosol [GO:0005829]; mitochondrion [GO:0005739]; methenyltetrahydrofolate cyclohydrolase activity [GO:0004477]; methylenetetrahydrofolate dehydrogenase (NADP+) activity [GO:0004488]; one-carbon metabolic process [GO:0006730]; photorespiration [GO:0009853]; tetrahydrofolate interconversion [GO:0035999] locus:2064143; AT2G38660 Bifunctional protein Methylenetetrahydrofolate dehydrogenase-like (Os09g0327300 protein) (cDNA clone:001-030-E09, full insert sequence) Q6K2P4 Q6K2P4_ORYSJ Os09g0327300 OSNPB_090327300 P0706E03.8 ENOG411DW1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411DW1W Q8GW63 Q8GW63_ARATH At1g64600 (Copper ion binding / methyltransferase) (Uncharacterized protein At1g64600/F1N19_16) 61791 At1g64600 (Copper ion binding / methyltransferase) (Uncharacterized protein At1g64600/F1N19_16) methyltransferase activity [GO:0008168]; translation [GO:0006412] locus:2019484; AT1G64600 Mitochondrial small ribosomal subunit Rsm22 Os10g0520950 protein (Fragment),Os07g0297300 protein A0A0P0XWM6,A0A0P0X4X2 A0A0P0XWM6_ORYSJ,A0A0P0X4X2_ORYSJ Os10g0520950 OSNPB_100520950,Os07g0297300 OSNPB_070297300 ENOG411DW1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR Os11g0481600 protein (Fragment),Os04g0401900 protein (Fragment) Q0ISQ3,Q0JDI2 Q0ISQ3_ORYSJ,Q0JDI2_ORYSJ Os11g0481600 Os11g0481600 OSNPB_110481600,Os04g0401900 Os04g0401900 OSNPB_040401900 ENOG411DW1Y Q9LF66,A0A1P8BAC1 Y5758_ARATH,A0A1P8BAC1_ARATH BTB/POZ domain-containing protein At5g17580,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 62932,64640 BTB/POZ domain-containing protein At5g17580,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:2151411; AT5G17580 BTB POZ domain-containing protein NA NA NA NA NA NA NA ENOG411DW1Z Q9ZUE9 PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000 59773 Pentatricopeptide repeat-containing protein At2g06000 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2064707; AT2G06000 Pentatricopeptide repeat-containing protein OSJNBa0027P08.18 protein (Os04g0446100 protein) Q7XUX2 Q7XUX2_ORYSJ Os04g0446100 OSJNBa0027P08.18 OSNPB_040446100 ENOG411DW1A IAMT1 Q9FLN8 IAMT1_ARATH Indole-3-acetate O-methyltransferase 1 (EC 2.1.1.278) (IAA carboxylmethyltransferase 1) (S-adenosyl-L-methionine:(indol-3-yl) acetate carboxylmethyltransferase 1) This germplasm has no obvious developmental phenotypes.,Curly leaf phenotype. FUNCTION: Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. Required for correct leaf pattern formation. MeIAA seems to be an inactive form of IAA. {ECO:0000269|PubMed:12897246, ECO:0000269|PubMed:16169896, ECO:0000269|PubMed:17926040}. MISCELLANEOUS: Plant silencing IAMT1 are smaller than the wild-type, show epinastic leaves and smaller siliques, and have low fertility. {ECO:0000305|PubMed:16169896}. ARA:AT5G55250-MONOMER; 2.1.1.278; 2.1.1.278 42054 Indole-3-acetate O-methyltransferase 1 (EC 2.1.1.278) (IAA carboxylmethyltransferase 1) (S-adenosyl-L-methionine:(indol-3-yl) acetate carboxylmethyltransferase 1) identical protein binding [GO:0042802]; indole acetic acid carboxyl methyltransferase activity [GO:0051749]; indole-3-acetate carboxyl methyltransferase activity [GO:0103007]; magnesium ion binding [GO:0000287]; auxin homeostasis [GO:0010252]; polarity specification of adaxial/abaxial axis [GO:0009944] DEVELOPMENTAL STAGE: After the eighth true leaves emerge, the expression gradually fades away from the center of the leaves toward the edges, as leaf development proceedes. In fully expanded leaves, expressed only at the edge of the leaf blade. {ECO:0000269|PubMed:16169896}. TISSUE SPECIFICITY: Expressed in seedling roots and leaves. Expressed in the stigma, funiculus, and vascular bundles in sepals, petals and stamens. {ECO:0000269|PubMed:16169896}. locus:2161680; AT5G55250 indole-3-acetate O-methyltransferase 1-like Indole-3-acetate O-methyltransferase 1 (EC 2.1.1.278) (IAA carboxylmethyltransferase 1) (OsSABATH4) (S-adenosyl-L-methionine:(indol-3-yl) acetate carboxylmethyltransferase 1),OSJNBa0087O24.14 protein (Os04g0666233 protein) Q0J998,Q7XPJ6 IAMT1_ORYSJ,Q7XPJ6_ORYSJ IAMT1 SABATH4 Os04g0665200 LOC_Os04g56950 OSJNBa0087O24.5,OSJNBa0087O24.14 Os04g0666233 OSNPB_040666233 FUNCTION: Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. MeIAA seems to be an inactive form of IAA. {ECO:0000269|PubMed:18162595}. ENOG411DW1B MBG8.19 Q93V36,Q8RY61,F4K1W7 Q93V36_ARATH,Q8RY61_ARATH,F4K1W7_ARATH Polyadenylate-binding protein interacting protein (Uncharacterized protein At5g54920) (Uncharacterized protein At5g54920; MBG8.19),AT4g26990/F10M23_330 (Polyadenylate-binding protein interacting protein),Polyadenylate-binding protein interacting protein 56032,50524,56543 Polyadenylate-binding protein interacting protein (Uncharacterized protein At5g54920) (Uncharacterized protein At5g54920; MBG8.19),AT4g26990/F10M23_330 (Polyadenylate-binding protein interacting protein),Polyadenylate-binding protein interacting protein cytoplasmic stress granule [GO:0010494]; RNA binding [GO:0003723]; regulation of cytoplasmic mRNA processing body assembly [GO:0010603]; stress granule assembly [GO:0034063] locus:2116317;,locus:2160235; AT5G54920,AT4G26990 NA Os04g0625900 protein A0A0P0WEY9 A0A0P0WEY9_ORYSJ Os04g0625900 OSNPB_040625900 ENOG411DW1C Q8GYL4 Q8GYL4_ARATH At4g38020 (Uncharacterized protein At4g38020/F20D10_140) (tRNA/rRNA methyltransferase (SpoU) family protein) 38460 At4g38020 (Uncharacterized protein At4g38020/F20D10_140) (tRNA/rRNA methyltransferase (SpoU) family protein) RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; RNA processing [GO:0006396] locus:2121075; AT4G38020 SpoU rRNA Methylase family Os03g0685100 protein (RNA methyltransferase, TrmH family protein, expressed) (cDNA clone:006-206-G10, full insert sequence) Q10F15 Q10F15_ORYSJ LOC_Os03g48050 Os03g0685100 OSNPB_030685100 ENOG411DW1D CYP707A4 Q9LJK2 ABAH4_ARATH Abscisic acid 8'-hydroxylase 4 (ABA 8'-hydroxylase 4) (EC 1.14.13.93) (Cytochrome P450 707A4) FUNCTION: Involved in the oxidative degradation of abscisic acid, but not in the isomerization of the produced 8'-hydroxyabscisic acid (8'-OH-ABA) to (-)-phaseic acid (PA). {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:16543410}. PATHWAY: Plant hormone degradation; abscisic acid degradation. MetaCyc:AT3G19270-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.13.93; 1.14.13.93 53922 Abscisic acid 8'-hydroxylase 4 (ABA 8'-hydroxylase 4) (EC 1.14.13.93) (Cytochrome P450 707A4) integral component of membrane [GO:0016021]; (+)-abscisic acid 8'-hydroxylase activity [GO:0010295]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; abscisic acid catabolic process [GO:0046345]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] DEVELOPMENTAL STAGE: Not induced after imbibition. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:16543410}. TISSUE SPECIFICITY: Mainly expressed in flowers. Lower expression in siliques, rosette leaves, roots and stems. Not expressed in dry seeds. Expressed in silique envelopes, but not in embryo or endosperm during the seed development. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:16543410}. locus:2094058; AT3G19270 Abscisic acid 8'-hydroxylase Abscisic acid 8'-hydroxylase 2 (ABA 8'-hydroxylase 2) (EC 1.14.13.93) (Cytochrome P450 707A6) (OsABA8ox2),Abscisic acid 8'-hydroxylase 3 (ABA 8'-hydroxylase 3) (EC 1.14.13.93) (Cytochrome P450 707A7) (OsABA8ox3) Q6ZDE3,Q0J185 ABAH2_ORYSJ,ABAH3_ORYSJ CYP707A6 ABA8OX2 Os08g0472800 LOC_Os08g36860 OsJ_026541 P0013B04.19,CYP707A7 ABA8OX3 Os09g0457100 LOC_Os09g28390 B1342C04.43 OsJ_028469 FUNCTION: Involved in the oxidative degradation of abscisic acid.,FUNCTION: Involved in the oxidative degradation of abscisic acid. {ECO:0000250}. ENOG411DW1E SKIP5 Q94FT2,A0A1I9LNL7,F4JCX6,A0A178V842 SKIP5_ARATH,A0A1I9LNL7_ARATH,F4JCX6_ARATH,A0A178V842_ARATH F-box protein SKIP5 (SKP1-interacting partner 5),SKP1/ASK-interacting protein 5 PATHWAY: Protein modification; protein ubiquitination. 30556,15689,13791,15929 F-box protein SKIP5 (SKP1-interacting partner 5),SKP1/ASK-interacting protein 5 protein ubiquitination [GO:0016567] locus:2096956; AT3G54480 F-Box protein Os07g0659700 protein (Fragment) Q0D3Y2 Q0D3Y2_ORYSJ Os07g0659700 Os07g0659700 OSNPB_070659700 ENOG411DW1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor protein kinase D-mannose binding lectin family protein, expressed (Os12g0527700 protein) (cDNA clone:J013049J16, full insert sequence),Os06g0164900 protein,Os06g0165500 protein Q2QPI9,A0A0N7KLL1,A0A0P0WSZ1 Q2QPI9_ORYSJ,A0A0N7KLL1_ORYSJ,A0A0P0WSZ1_ORYSJ LOC_Os12g34320 Os12g0527700 OSNPB_120527700,Os06g0164900 OSNPB_060164900,Os06g0165500 OSNPB_060165500 ENOG411DW1G SYP71,SYP73 Q9SF29,Q94KK5,A0A1I9LPK0,A0A1I9LPJ8,F4JEA3,A0A1I9LPJ9,A0A1I9LPJ7 SYP71_ARATH,SYP73_ARATH,A0A1I9LPK0_ARATH,A0A1I9LPJ8_ARATH,F4JEA3_ARATH,A0A1I9LPJ9_ARATH,A0A1I9LPJ7_ARATH Syntaxin-71 (AtSYP71),Syntaxin-73 (AtSYP73),Syntaxin of plants 73 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. 29983,29818,29591,24438,29891,22261,26851 Syntaxin-71 (AtSYP71),Syntaxin-73 (AtSYP73),Syntaxin of plants 73 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; SNARE complex [GO:0031201]; protein transporter activity [GO:0008565]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; intracellular protein transport [GO:0006886]; protein targeting to membrane [GO:0006612]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886],intracellular [GO:0005622]; membrane [GO:0016020]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; protein transporter activity [GO:0008565]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Expressed in root, leaf, stem, flower and silique. locus:2075054;,locus:2082747; AT3G09740,AT3G61450 syntaxin of plants Os01g0685200 protein (cDNA, clone: J053058F10, full insert sequence),Os09g0359700 protein,Os05g0553700 protein A2ZWM2,Q0J2C7,A0A0P0WQ70 A2ZWM2_ORYSJ,Q0J2C7_ORYSJ,A0A0P0WQ70_ORYSJ Os01g0685200 OsJ_03039 OSNPB_010685200,Os09g0359700 OSNPB_090359700,Os05g0553700 OSNPB_050553700 ENOG411DW1I SKL1 Q9LW20 SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic (AtSKL1) DISRUPTION PHENOTYPE: Albino plants. {ECO:0000269|PubMed:19057671}. Seedling lethal (inferred from pigment defect); Albino embryos-D. Christendat-2008 FUNCTION: Required for chloroplast biogenesis. {ECO:0000269|PubMed:19057671}. Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 30474 Probable inactive shikimate kinase like 1, chloroplastic (AtSKL1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast organization [GO:0009658]; thylakoid membrane organization [GO:0010027] locus:2088469; AT3G26900 shikimate kinase Os01g0102600 protein (cDNA clone:J013000E05, full insert sequence),Os01g0102600 protein (Fragment) Q0JRG4,A0A0P0UXJ5 Q0JRG4_ORYSJ,A0A0P0UXJ5_ORYSJ Os01g0102600 Os01g0102600 OsJ_00021 OSNPB_010102600,Os01g0102600 OSNPB_010102600 ENOG411DW1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6EUS1 Q6EUS1_ORYSJ prx27 Os02g0236600 OJ1077_A12.23 OsJ_06021 OSNPB_020236600 ENOG411DW1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0549400 protein (cDNA clone:J033138D21, full insert sequence) Q69NI5 Q69NI5_ORYSJ Os09g0549400 OJ1210_A07.18 OsJ_30239 OSNPB_090549400 ENOG411DY1B MLH1 Q9ZRV4,A0A1P8B4Y5 MLH1_ARATH,A0A1P8B4Y5_ARATH DNA mismatch repair protein MLH1 (MutL protein homolog 1) (Protein MUTL-HOMOLOGUE 1) (AtMLH1),MUTL-homologue 1 DISRUPTION PHENOTYPE: Reduced fertility and mitotic defects: 72 per cent reduction in homologous somatic recombination. {ECO:0000269|PubMed:17559505}. The mlh1-1 mutant has reduced seed set and shorter siliques compared to a wild-type plant but it does maintain both male and female fertility. It also has a reduced number of mitotic recombination events in a GUS-based assay. In addition it has a greater proportion of homeologous recombination events than wild-type plants suggesting that MLH1 normally promotes homologous mitotic recombination but limits homeologous recombination. FUNCTION: Involved in DNA mismatch repair (MMR), correcting insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of the MutLbeta heterodimer, which probably forms a ternary complex with the MutSbeta heterodimer that initially recognizes the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in promoting meiotic crossing-over and is involved in maintaining the genetic stability of simple sequence repeats by correction of frameshift intermediates. {ECO:0000269|PubMed:16856855, ECO:0000269|PubMed:17559505, ECO:0000269|PubMed:23184005}. R-ATH-5358565; 82365,62689 DNA mismatch repair protein MLH1 (MutL protein homolog 1) (Protein MUTL-HOMOLOGUE 1) (AtMLH1),MUTL-homologue 1 chiasma [GO:0005712]; MutLalpha complex [GO:0032389]; nuclear chromatin [GO:0000790]; synaptonemal complex [GO:0000795]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; mismatched DNA binding [GO:0030983]; single-stranded DNA binding [GO:0003697]; fruit development [GO:0010154]; mismatch repair [GO:0006298]; mitotic recombination [GO:0006312]; pollen development [GO:0009555]; seed development [GO:0048316]; seed germination [GO:0009845],ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] DEVELOPMENTAL STAGE: Expressed during prophase I of meiosis: detected from pachytene to diakinesis stages. {ECO:0000269|PubMed:16467846, ECO:0000269|PubMed:16856855, ECO:0000269|PubMed:18318687, ECO:0000269|PubMed:20628250, ECO:0000269|PubMed:22844245}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16467846}. locus:2122388; AT4G09140 mismatch repair protein Os01g0958900 protein (Putative MutL homolog 1 protein) (cDNA clone:J033125I19, full insert sequence),Os01g0959000 protein (Putative Ser/Arg-related nuclear matrix protein) (cDNA clone:J023048A15, full insert sequence),Os08g0518000 protein Q5JN46,Q5JN45,B9G1T2 Q5JN46_ORYSJ,Q5JN45_ORYSJ,B9G1T2_ORYSJ Os01g0958900 Os01g0958900 OSNPB_010958900 P0401G10.10,Os01g0959000 OSNPB_010959000 P0401G10.11,Os08g0518000 OsJ_27941 OSNPB_080518000 ENOG411E5N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RINGv Os05g0207400 protein (cDNA clone:001-009-B05, full insert sequence) (cDNA clone:J023042J24, full insert sequence) Q60EZ3 Q60EZ3_ORYSJ Os05g0207400 Os05g0207400 OJ1430_B02.3 OSNPB_050207400 ENOG411EDCN GT15 Q5XF04,A0A1P8AZT3,A0A1P8AZR3 GT15_ARATH,A0A1P8AZT3_ARATH,A0A1P8AZR3_ARATH Probable xyloglucan galactosyltransferase GT15 (EC 2.4.1.-) (Glycosyltransferase 15) (AtGT15),Exostosin family protein FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 54788,55756,60233 Probable xyloglucan galactosyltransferase GT15 (EC 2.4.1.-) (Glycosyltransferase 15) (AtGT15),Exostosin family protein Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, stems and sepals. {ECO:0000269|PubMed:15020758}. locus:2045527; AT2G31990 exostosin family NA NA NA NA NA NA NA ENOG411E17M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E17H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os08g0169400 protein (Fragment),Os08g0168700 protein (Fragment) A0A0P0XCB7,A0A0P0XC96 A0A0P0XCB7_ORYSJ,A0A0P0XC96_ORYSJ Os08g0169400 OSNPB_080169400,Os08g0168700 OSNPB_080168700 ENOG411DVUH RKL1,RLK902 Q9LP77,Q9LVI6 Y1848_ARATH,RLK90_ARATH Probable inactive receptor kinase At1g48480,Probable inactive receptor kinase RLK902 (Receptor-like kinase 902) DISRUPTION PHENOTYPE: No visible phenotype. Probably due to the redundancy with other receptor-like kinases. {ECO:0000269|PubMed:15388970}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:15388970}. 71131,70406 Probable inactive receptor kinase At1g48480,Probable inactive receptor kinase RLK902 (Receptor-like kinase 902) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Highly expressed in seedlings and leaves. Lower expression in roots, stems, flowers and siliques. Detected in the vascular tissues of roots, in the trichomes of young rosettes leaves and hydathodes, in the floral abscission zones, in filament apex and stomata cells of anthers, in inflorescence stems and in sepals. {ECO:0000269|PubMed:11100776, ECO:0000269|PubMed:15388970}.,TISSUE SPECIFICITY: Expressed in root tips, lateral root primordia, stipules, and floral organ abscission zones. {ECO:0000269|PubMed:15388970}. locus:2198090;,locus:2088500; AT1G48480,AT3G17840 inactive receptor kinase Os03g0712400 protein (Fragment),Leucine Rich Repeat family protein, expressed (Os03g0223000 protein) (Putative leucine-rich repeat transmembrane protein kinase) (cDNA clone:J013002E20, full insert sequence),Os03g0223000 protein Q0DP60,Q8H811,A0A0P0VUW3,A0A0N7KGV0,A0A0P0W2S4 Q0DP60_ORYSJ,Q8H811_ORYSJ,A0A0P0VUW3_ORYSJ,A0A0N7KGV0_ORYSJ,A0A0P0W2S4_ORYSJ Os03g0712400 Os03g0712400 OSNPB_030712400,OJ1743A09.16 Os03g0223000 LOC_Os03g12250 OsJ_09969 OSNPB_030223000,Os03g0223000 OSNPB_030223000,Os03g0712400 OSNPB_030712400 ENOG411DPZQ EDR2,EDR2L,MFC19.23 F4JSE7,Q8VZF6,A0A1P8BHW3 EDR2_ARATH,EDR2L_ARATH,A0A1P8BHW3_ARATH Protein ENHANCED DISEASE RESISTANCE 2,Protein ENHANCED DISEASE RESISTANCE 2-like,Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein DISRUPTION PHENOTYPE: Enhanced disease resistance salicylic acid-(SA-) dependent to the biotrophic powdery mildew pathogen Erysiphe cichoracearum at a late stage of the infection process and characterized by the formation of necrotic lesions. Enhanced ethylene-induced senescence phenotype. In edr2-6, exaggerated chlorosis and necrosis response to attack by pathogens (e.g. Hyaloperonospora parasitica, Golovinomyces cichoracearum and Blumeria graminis), but not in response to abiotic stresses or attack by the bacterial pathogen Pseudomonas syringae, characterized by initiation of cell death at infection site and hyper sensitive response (HR). {ECO:0000269|PubMed:16212604, ECO:0000269|PubMed:17612410}. Resistant to Erysiphe cichoracearum. Resistant to powdery mildew-R. Innes-2005 FUNCTION: Negative regulator of the salicylic acid- (SA-) mediated resistance to pathogens, including the biotrophic powdery mildew pathogens Golovinomyces cichoracearum and Blumeria graminis, and the downy mildew pathogen Hyaloperonospora parasitica, probably by limiting the initiation of cell death and the establishment of the hypersensitive response (HR). Prevents ethylene-induced senescence. Binds to phosphatidylinositol-4-phosphate (PtdIns(4)P) in vitro. {ECO:0000269|PubMed:16212604, ECO:0000269|PubMed:17612410}.,FUNCTION: Binds to phosphatidylinositol-4-phosphate (PtdIns(4)P). May regulate the salicylic acid- (SA-) mediated resistance to pathogens (By similarity). {ECO:0000250}. 81847,81725,70936 Protein ENHANCED DISEASE RESISTANCE 2,Protein ENHANCED DISEASE RESISTANCE 2-like,Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein endoplasmic reticulum membrane [GO:0005789]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; phosphatidylinositol-4-phosphate binding [GO:0070273]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of leaf senescence [GO:1900056]; plant-type hypersensitive response [GO:0009626]; regulation of defense response to fungus [GO:1900150]; response to ethylene [GO:0009723]; response to salicylic acid [GO:0009751],endoplasmic reticulum membrane [GO:0005789]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; defense response [GO:0006952],lipid binding [GO:0008289] TISSUE SPECIFICITY: Expressed ubiquitously in all tissues and organs, including leaves, roots, flowers, stems and siliques. {ECO:0000269|PubMed:16212604}. locus:2117134;,locus:2163548; AT4G19040,AT5G45560 START domain containing protein expressed Os10g0455900 protein C7J7X6 C7J7X6_ORYSJ Os10g0455900 OSNPB_100455900 ENOG411DPZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os11g0620500 protein (Receptor kinase, putative, expressed),Leucine-rich repeat receptor protein kinase EXS, putative (Os03g0720166 protein) (Putative receptor-like protein kinase),Os05g0454300 protein Q2R129,Q6ASV6,B9FPX7 Q2R129_ORYSJ,Q6ASV6_ORYSJ,B9FPX7_ORYSJ LOC_Os11g40550 Os11g0620500 OSNPB_110620500,B1377B10.11 Os03g0720166 LOC_Os03g51060 OsJ_12377 OSNPB_030720166,Os05g0454300 OsJ_18768 OSNPB_050454300 ENOG411DPZ1 FRO8 Q8VY13,A0A1P8BD89 FRO8_ARATH,A0A1P8BD89_ARATH Ferric reduction oxidase 8, mitochondrial (AtFRO8) (EC 1.16.1.7) (Ferric-chelate reductase 8),Ferric reduction oxidase 8 FUNCTION: Ferric chelate reductase probably involved in iron reduction in leaf veins for transport. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. {ECO:0000269|PubMed:16006655}. ARA:AT5G50160-MONOMER; 1.16.1.7 83230,62822 Ferric reduction oxidase 8, mitochondrial (AtFRO8) (EC 1.16.1.7) (Ferric-chelate reductase 8),Ferric reduction oxidase 8 integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in shoots. Detected in roots, pedicels, flowers, siliques and leaf veins. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:16362328}. locus:2157697; AT5G50160 ferric reduction oxidase 8 NA NA NA NA NA NA NA ENOG411DPZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1336 domain containing protein expressed Expressed protein (Os12g0577600 protein) Q2QN63 Q2QN63_ORYSJ Os12g0577600 LOC_Os12g38850 Os12g0577600 OsJ_36638 OSNPB_120577600 ENOG411E7VC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycine radical NA NA NA NA NA NA NA ENOG411DSV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPT2 Os02g0664400 protein (Fragment) A0A0P0VMP9 A0A0P0VMP9_ORYSJ Os02g0664400 OSNPB_020664400 ENOG411DVU1 F5E6.4,RAF11,RAF10 Q9C547,Q9C902,A0A178VF96,Q9C9V5,A0A1I9LSY8,F4JC18,F4HVH9,F4K644,A0A1I9LPU7,F4K645,A0A1P8BE34,A0A1P8BE22,A0A1I9LPU6,A0A1P8AN76,A0A1P8BE48,A0A1I9LPU9,F4K646,F4K647 Q9C547_ARATH,Q9C902_ARATH,A0A178VF96_ARATH,Q9C9V5_ARATH,A0A1I9LSY8_ARATH,F4JC18_ARATH,F4HVH9_ARATH,F4K644_ARATH,A0A1I9LPU7_ARATH,F4K645_ARATH,A0A1P8BE34_ARATH,A0A1P8BE22_ARATH,A0A1I9LPU6_ARATH,A0A1P8AN76_ARATH,A0A1P8BE48_ARATH,A0A1I9LPU9_ARATH,F4K646_ARATH,F4K647_ARATH Protein kinase family protein (Protein kinase, putative; 12576-15979) (Protein kinase, putative; 47231-50634),PAS domain-containing protein tyrosine kinase family protein (Protein kinase, putative; 19229-23534) (Uncharacterized protein At3g06620),Protein kinase family protein,PAS domain-containing protein tyrosine kinase family protein (Uncharacterized protein At1g67890) (Uncharacterized protein T23K23.26),PAS domain-containing protein tyrosine kinase family protein R-ATH-430116;R-ATH-442742;R-ATH-5673000;R-ATH-5674135;R-ATH-5674499;R-ATH-5675221; 75176,86055,71800,82220,80681,82135,85218,85788,61948,92815,77272,77648,78523,67956,71507,70324,83143,54548 Protein kinase family protein (Protein kinase, putative; 12576-15979) (Protein kinase, putative; 47231-50634),PAS domain-containing protein tyrosine kinase family protein (Protein kinase, putative; 19229-23534) (Uncharacterized protein At3g06620),Protein kinase family protein,PAS domain-containing protein tyrosine kinase family protein (Uncharacterized protein At1g67890) (Uncharacterized protein T23K23.26),PAS domain-containing protein tyrosine kinase family protein intracellular [GO:0005622]; ATP binding [GO:0005524]; phosphorelay sensor kinase activity [GO:0000155]; protein serine/threonine kinase activity [GO:0004674]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; regulation of transcription, DNA-templated [GO:0006355],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; regulation of transcription, DNA-templated [GO:0006355],intracellular [GO:0005622]; ATP binding [GO:0005524]; phosphorelay sensor kinase activity [GO:0000155]; regulation of transcription, DNA-templated [GO:0006355],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; regulation of transcription, DNA-templated [GO:0006355],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; maintenance of seed dormancy [GO:0010231]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; regulation of transcription, DNA-templated [GO:0006355]; response to glucose [GO:0009749],intracellular [GO:0005622]; ATP binding [GO:0005524]; phosphorelay sensor kinase activity [GO:0000155],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; regulation of transcription, DNA-templated [GO:0006355]; response to glucose [GO:0009749],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2084304;,locus:2084314;,locus:2084294;,locus:2200296;,locus:2158019; AT3G06630,AT3G06620,AT1G67890,AT3G06640,AT5G49470 kinase family Os12g0562500 protein (Fragment) Q0IML7 Q0IML7_ORYSJ Os12g0562500 Os12g0562500 OSNPB_120562500 ENOG411DVU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA magnesium ion transmembrane transporter activity Magnesium transporter MRS2-C,Os04g0501100 protein Q0JBZ6,A0A0P0WC87 MRS2C_ORYSJ,A0A0P0WC87_ORYSJ MRS2-C Os04g0501100 LOC_Os04g42280 OSJNBa0029H02.22,Os04g0501100 OSNPB_040501100 FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}. ENOG411DYS1 GEM Q8S8F8,Q9M063 GEM_ARATH,GEML3_ARATH GLABRA2 expression modulator,Putative GEM-like protein 3 FUNCTION: Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters. {ECO:0000269|PubMed:17450124}. 32215,26293 GLABRA2 expression modulator,Putative GEM-like protein 3 cytosol [GO:0005829]; histone H3-K9 methylation [GO:0051567]; regulation of epidermal cell division [GO:0010482]; root hair cell differentiation [GO:0048765]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17450124}. locus:505006267; AT2G22475,AT4G40100 GRAM domain Os06g0218100 protein Q0DDK5 Q0DDK5_ORYSJ Os06g0218100 Os06g0218100 OSNPB_060218100 ENOG411DYS2 DGK1,DGK2 Q39017,Q9FFN7,A0A1P8BCS4 DGK1_ARATH,DGK2_ARATH,A0A1P8BCS4_ARATH Diacylglycerol kinase 1 (AtDGK1) (DAG kinase 1) (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1),Diacylglycerol kinase 2 (AtDGK2) (DAG kinase 2) (EC 2.7.1.107) (Diglyceride kinase 2) (DGK 2),Diacylglycerol kinase (DAG kinase) (EC 2.7.1.107) FUNCTION: Phosphorylates the second messenger diacylglycerol (DAG) to generate phosphatidic acid (PA), another important signaling molecule. PA is required for plant development and responses to abiotic stress and pathogen attack. May be involved in the accumulation of PA during cold stress (By similarity). {ECO:0000250}.,FUNCTION: Phosphorylates the second messenger diacylglycerol (DAG) to generate phosphatidic acid (PA), another important signaling molecule. PA is required for plant development and responses to abiotic stress and pathogen attack. May be involved in the accumulation of PA during cold stress. Exhibits high specificity for 1-stearoyl-2-arachidonoyl- sn-glycerol (1,2-SAG), 1,2-dioleoyl-sn-glycerol (1,2-DOG), 1-palmitoyl, 2-oleoyl-sn-glycerol (1,2 POG), 1-stearoyl, 2-linoleoyl-sn-glycerol (1,2-SLG) and 1-oleoyl, 2-palmitoyl-sn-glycerol (1,2-OPG), but has almost no activity toward 1,2-dioctanoyl-sn-glycerol (1,2-DOCG), 1,2-dipalmitoyl-sn-glycerol (1,2-DPG), 1,2-dimyristoyl-sn-glycerol (1,2-DMG) and 1-oleoyl-2-acetyl-sn-glycerol (1,2-OAG). {ECO:0000269|PubMed:14665624, ECO:0000269|PubMed:16081412, ECO:0000269|PubMed:23346092}. MISCELLANEOUS: Treatment with (E)-2-hexenal, (Z)-3-hexenal and allo-ocimene increases plant resistance against the necrotrophic fungal pathogen Botrytis cinerea. {ECO:0000305|PubMed:15879447}. ARA:AT5G07920-MONOMER;,ARA:AT5G63770-MONOMER;MetaCyc:AT5G63770-MONOMER; R-ATH-114508; 2.7.1.107; Glycerophospholipid metabolism (00564),Metabolic pathways (01100),Phosphatidylinositol signaling system (04070),Glycerolipid metabolism (00561) 2.7.1.107 79984,79405,75436 Diacylglycerol kinase 1 (AtDGK1) (DAG kinase 1) (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1),Diacylglycerol kinase 2 (AtDGK2) (DAG kinase 2) (EC 2.7.1.107) (Diglyceride kinase 2) (DGK 2),Diacylglycerol kinase (DAG kinase) (EC 2.7.1.107) integral component of membrane [GO:0016021]; intracellular [GO:0005622]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; NAD+ kinase activity [GO:0003951]; defense response [GO:0006952]; intracellular signal transduction [GO:0035556]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; ATP binding [GO:0005524]; diacylglycerol kinase activity [GO:0004143]; metal ion binding [GO:0046872]; NAD+ kinase activity [GO:0003951]; defense response [GO:0006952]; intracellular signal transduction [GO:0035556]; leaf development [GO:0048366]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205]; response to cold [GO:0009409]; response to wounding [GO:0009611]; root development [GO:0048364],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; ATP binding [GO:0005524]; diacylglycerol kinase activity [GO:0004143]; NAD+ kinase activity [GO:0003951]; intracellular signal transduction [GO:0035556]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205] TISSUE SPECIFICITY: Expressed in roots, shoots, and leaves. {ECO:0000269|PubMed:8605313}.,TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, flowers, siliques and roots. Highly expressed in young leaves and at lower levels in older leaves. In young seedlings, expressed at the root-shoot junction zone and vascular bundles of the cotyledons. In older plants, expressed in root tip, central cylinder, root hair, leaf mesophyll cells and guard cells, sepals, filaments of the anthers, stigma, valves of young and early adult siliques and hilum of seeds. {ECO:0000269|PubMed:14665624}. locus:2142788;,locus:2160604; AT5G07920,AT5G63770 Diacylglycerol kinase Diacylglycerol kinase (DAG kinase) (EC 2.7.1.107),Os12g0224000 protein (Fragment),Os03g0425300 protein (Putative diacylglycerol kinase (With alternative splicing)) (Similar to Diacylglycerol kinase 1),Diacylglycerol kinase (DAG kinase) (EC 2.7.1.107) (Fragment) Q2QN70,Q0IPC3,Q75GS0,A0A0P0VYY7 Q2QN70_ORYSJ,Q0IPC3_ORYSJ,Q75GS0_ORYSJ,A0A0P0VYY7_ORYSJ Os12g0576900 LOC_Os12g38780 Os12g0576900 OSNPB_120576900,Os12g0224000 Os12g0224000 OSNPB_120224000,OSJNBa0020H02.13 Os03g0425300 OSNPB_030425300,Os03g0425300 OSNPB_030425300 ENOG411DYS9 TT8 Q9FT81 TT8_ARATH Transcription factor TT8 (Basic helix-loop-helix protein 42) (AtbHLH42) (bHLH 42) (Protein TRANSPARENT TESTA 8) (Transcription factor EN 32) (bHLH transcription factor bHLH042) Yellow seed coat-L. Lepiniec-2000 FUNCTION: Transcription activator, when associated with MYB75/PAP1 or MYB90/PAP2. Involved in the control of flavonoid pigmentation. Plays a key role in regulating leucoanthocyanidin reductase (BANYULS) and dihydroflavonol-4-reductase (DFR). Not required for leucoanthocyanidin dioxygenase (LDOX) expression. {ECO:0000269|PubMed:15361138}. MISCELLANEOUS: TT8 might interact with TT2 and TTG1 to modulate the late genes of the flavonoid pathway. 59198 Transcription factor TT8 (Basic helix-loop-helix protein 42) (AtbHLH42) (bHLH 42) (Protein TRANSPARENT TESTA 8) (Transcription factor EN 32) (bHLH transcription factor bHLH042) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; flavonoid biosynthetic process [GO:0009813]; jasmonic acid mediated signaling pathway [GO:0009867]; positive regulation of anthocyanin biosynthetic process [GO:0031542]; regulation of flavonoid biosynthetic process [GO:0009962]; regulation of proanthocyanidin biosynthetic process [GO:2000029]; seed coat development [GO:0010214]; seed development [GO:0048316]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] DEVELOPMENTAL STAGE: Faint expression in buds and flowers. Increases during the very early stages of seed development, reaches a maximum at the globular embryo stage and stays high throughout seed formation. TISSUE SPECIFICITY: Buds, flowers and developing siliques, but not in leaves, stems and roots. {ECO:0000269|PubMed:12679534}. locus:2118524; AT4G09820 Transcription factor Os07g0211500 protein A0A0P0X425 A0A0P0X425_ORYSJ Os07g0211500 OSNPB_070211500 ENOG411DYSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcineurin B-like protein Calcineurin B-like protein 6,Os02g0479400 protein Q3HRP1,A0A0P0VJ10 CNBL6_ORYSJ,A0A0P0VJ10_ORYSJ CBL6 Os12g0162400 LOC_Os12g06510,Os02g0479400 OSNPB_020479400 FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DYSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NA NA NA NA NA NA NA ENOG411E5N1 ERF098 Q9LTC5 ERF98_ARATH Ethylene-responsive transcription factor ERF098 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 16097 Ethylene-responsive transcription factor ERF098 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2086213; AT3G23230 ethylene-responsive transcription factor NA NA NA NA NA NA NA ENOG411DY3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cyclic phosphodiesterase Os05g0517900 protein (cDNA, clone: J100065O17, full insert sequence) Q75II2 Q75II2_ORYSJ Os05g0517900 B1130G10.20 OSNPB_050517900 ENOG411E0EX FACE2 Q8GW19,A0A1P8B2N0 FACE2_ARATH,A0A1P8B2N0_ARATH CAAX prenyl protease 2 (EC 3.4.22.-) (Farnesylated proteins-converting enzyme 2) (AtFACE-2) (Prenyl protein-specific endoprotease 2) (Protein RAS-CONVERTING ENZYME 1) (AtRCE1),Farnesylated protein-converting enzyme 2 FUNCTION: Proteolytically removes the C-terminal three residues of farnesylated and geranylated proteins. The substrate specificity is only partially overlapping with that of FACE1. {ECO:0000269|PubMed:12928436, ECO:0000269|PubMed:18641086}. R-ATH-5689880; 3.4.22.- 34548,28825 CAAX prenyl protease 2 (EC 3.4.22.-) (Farnesylated proteins-converting enzyme 2) (AtFACE-2) (Prenyl protein-specific endoprotease 2) (Protein RAS-CONVERTING ENZYME 1) (AtRCE1),Farnesylated protein-converting enzyme 2 endoplasmic reticulum [GO:0005783]; integral component of endoplasmic reticulum membrane [GO:0030176]; cysteine-type endopeptidase activity [GO:0004197]; endopeptidase activity [GO:0004175]; metalloendopeptidase activity [GO:0004222]; CAAX-box protein processing [GO:0071586]; protein processing [GO:0016485],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in seeds, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12928436}. locus:504956028; AT2G36305 CAAX prenyl protease Os05g0357700 protein (Fragment) A0A0P0WLB5 A0A0P0WLB5_ORYSJ Os05g0357700 OSNPB_050357700 ENOG411E0EQ MNB8.8 A0A1P8BAF7,Q9LVV0,A0A1P8BAF1 A0A1P8BAF7_ARATH,Q9LVV0_ARATH,A0A1P8BAF1_ARATH Ribonuclease P protein subunit P38-like protein,Emb|CAB82814.1 (Ribonuclease P protein subunit P38-like protein) 83959,83831,82717 Ribonuclease P protein subunit P38-like protein,Emb|CAB82814.1 (Ribonuclease P protein subunit P38-like protein) nucleolar ribonuclease P complex [GO:0005655] locus:2168402; AT5G53020 NA Os01g0550600 protein A0A0P0V469 A0A0P0V469_ORYSJ Os01g0550600 OSNPB_010550600 ENOG411E8CA MOK16.3 Q9LYX3,A0A1P8BB94 Q9LYX3_ARATH,A0A1P8BB94_ARATH Transmembrane protein (Uncharacterized protein F15A17_150) (Uncharacterized protein MOK16.3),Transmembrane protein 8354,12061 Transmembrane protein (Uncharacterized protein F15A17_150) (Uncharacterized protein MOK16.3),Transmembrane protein integral component of membrane [GO:0016021] locus:2143498; AT5G03120 NA NA NA NA NA NA NA NA ENOG411E8CF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0190300 protein Q6Z4I8 Q6Z4I8_ORYSJ OSJNBb0003E08.21 Os07g0190300 OSNPB_070190300 ENOG411E8C4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: rod shape-determining protein RodA NA NA NA NA NA NA NA ENOG411E765 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E763 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0572400 protein,Os01g0778500 protein Q6ZL32,A0A0P0V8W4 Q6ZL32_ORYSJ,A0A0P0V8W4_ORYSJ Os07g0572400 OJ1121_A05.25 OJ1699_E05.1 OSNPB_070572400,Os01g0778500 OSNPB_010778500 ENOG411E760 Q2HIQ5 Q2HIQ5_ARATH At4g23885 8404 At4g23885 mitochondrion [GO:0005739] locus:505006518; AT4G23885 NA NA NA NA NA NA NA NA ENOG411E76N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0279600 protein A0A0P0WK27 A0A0P0WK27_ORYSJ Os05g0279600 OSNPB_050279600 ENOG411E76H MCK7.8 Q8GWS7 Q8GWS7_ARATH AT5G58210 protein (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At5g58210/MCK7_8) 40848 AT5G58210 protein (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At5g58210/MCK7_8) locus:2161298; AT5G58210 NA NA NA NA NA NA NA NA ENOG411E76F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription elongation factor Elf1 like NA NA NA NA NA NA NA ENOG411DQR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase At1g54610-like Os02g0304500 protein A0A0P0VI47 A0A0P0VI47_ORYSJ Os02g0304500 OSNPB_020304500 ENOG411DQRF ATG18H,ATG18G Q8H1Q5,Q8GUL1,A0A1P8AW11 AT18H_ARATH,AT18G_ARATH,A0A1P8AW11_ARATH Autophagy-related protein 18h (AtATG18h),Autophagy-related protein 18g (AtATG18g),Autophagy 18h-like protein FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity). {ECO:0000250}. 100514,104578,87258 Autophagy-related protein 18h (AtATG18h),Autophagy-related protein 18g (AtATG18g),Autophagy 18h-like protein cytoplasm [GO:0005737]; pre-autophagosomal structure membrane [GO:0034045]; vacuolar membrane [GO:0005774]; autophagy [GO:0006914]; protein transport [GO:0015031]; response to starvation [GO:0042594]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in roots, flowers and leaves. {ECO:0000269|PubMed:15860012}.,TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15860012}. locus:2199512;,locus:2020853; AT1G54710,AT1G03380 autophagy Os05g0405900 protein (cDNA clone:J023003F07, full insert sequence),Os05g0405900 protein (Fragment) Q0DI99,A0A0N7KKR5,A0A0P0WM86 Q0DI99_ORYSJ,A0A0N7KKR5_ORYSJ,A0A0P0WM86_ORYSJ Os05g0405900 Os05g0405900 OSNPB_050405900,Os05g0405900 OSNPB_050405900 ENOG411DQRD Q5XF50,O80559,O22817,A0A1I9LP65 Q5XF50_ARATH,O80559_ARATH,O22817_ARATH,A0A1I9LP65_ARATH At3g59850 (Pectin lyase-like superfamily protein),Pectin lyase-like superfamily protein (Putative polygalacturonase) (Putative polygalacturonase/pectinase),Pectin lyase-like superfamily protein (Polygalacturonase/pectinase) (Putative polygalacturonase),Pectin lyase-like superfamily protein ARA:AT3G59850-MONOMER;,ARA:AT2G43890-MONOMER;,ARA:AT2G43870-MONOMER; 41251,42008,40810,46493 At3g59850 (Pectin lyase-like superfamily protein),Pectin lyase-like superfamily protein (Putative polygalacturonase) (Putative polygalacturonase/pectinase),Pectin lyase-like superfamily protein (Polygalacturonase/pectinase) (Putative polygalacturonase),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2080422;,locus:2051764;,locus:2043924; AT3G59850,AT2G43890,AT2G43870 polygalacturonase Os01g0623600 protein (cDNA clone:J033118O22, full insert sequence),Os11g0249400 protein,Os01g0891100 protein B7EU45,B9GA71,A0A0P0VBN2 B7EU45_ORYSJ,B9GA71_ORYSJ,A0A0P0VBN2_ORYSJ Os01g0623600 OSNPB_010623600,Os11g0249400 Os11g0249400 OsJ_33540 OSNPB_110249400,Os01g0891100 OSNPB_010891100 ENOG411DQRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os05g0590300 protein Q6L556 Q6L556_ORYSJ Os05g0590300 Os05g0590300 OJ1115_D04.15 OsJ_19743 OSJNBa0022J22.9 OSNPB_050590300 ENOG411DQRZ Q8GYP0,F4HTG9,Q84WK5,A8MQF1,A0A1P8ASB0,A0A1P8AS54,A0A1P8B574,A0A1P8B5A1,A0A1P8B572,F4I7D4,A8MQN5 Q8GYP0_ARATH,F4HTG9_ARATH,Q84WK5_ARATH,A8MQF1_ARATH,A0A1P8ASB0_ARATH,A0A1P8AS54_ARATH,A0A1P8B574_ARATH,A0A1P8B5A1_ARATH,A0A1P8B572_ARATH,F4I7D4_ARATH,A8MQN5_ARATH At4g09300 (LisH and RanBPM domains containing protein) (Uncharacterized protein At4g09300/T30A10_60),LisH and RanBPM domains containing protein,At1g61150 (LisH and RanBPM domains containing protein) (Uncharacterized protein At1g61150),AT1G61150 protein (LisH and RanBPM domains containing protein) 25920,21831,27786,25689,25542,31319,18935,26502,25822,32033,25042 At4g09300 (LisH and RanBPM domains containing protein) (Uncharacterized protein At4g09300/T30A10_60),LisH and RanBPM domains containing protein,At1g61150 (LisH and RanBPM domains containing protein) (Uncharacterized protein At1g61150),AT1G61150 protein (LisH and RanBPM domains containing protein) locus:2137926;,locus:2008460;,locus:2197404; AT4G09300,AT1G61150,AT1G11110 Pfam:RanBPM_CRA Expressed protein (Os03g0235100 protein) (cDNA clone:001-009-F04, full insert sequence) (cDNA clone:J023073F07, full insert sequence) Q10PG5 Q10PG5_ORYSJ Os03g0235100 LOC_Os03g13220 Os03g0235100 OSNPB_030235100 ENOG411DQRY RPL8A,RPL8C,RPL8B P46286,Q42064,Q4PSL7 RL81_ARATH,RL83_ARATH,RL82_ARATH 60S ribosomal protein L8-1 (60S ribosomal protein L2) (Protein EMBRYO DEFECTIVE 2296),60S ribosomal protein L8-3,60S ribosomal protein L8-2 Embryo defective; Globular-D. Meinke-2002 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 27859,27948,27997 60S ribosomal protein L8-1 (60S ribosomal protein L2) (Protein EMBRYO DEFECTIVE 2296),60S ribosomal protein L8-3,60S ribosomal protein L8-2 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuole [GO:0005773]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255] locus:2060917;,locus:2122189;,locus:2080968; AT2G18020,AT4G36130,AT3G51190 60S ribosomal protein 60S ribosomal protein L2 (60S ribosomal protein L2, putative, expressed) (Os12g0567700 protein) Q2QNF3 Q2QNF3_ORYSJ Os12g0567700 LOC_Os12g38000 Os12g0567700 OsJ_36548 OSNPB_120567700 ENOG411DQRU PIN7,PIN3,PIN4,PIN1 Q940Y5,Q9S7Z8,Q8RWZ6,Q9C6B8,A8MQX0,A0A1P8AY30 PIN7_ARATH,PIN3_ARATH,PIN4_ARATH,PINI_ARATH,A8MQX0_ARATH,A0A1P8AY30_ARATH Auxin efflux carrier component 7 (AtPIN7),Auxin efflux carrier component 3 (AtPIN3),Auxin efflux carrier component 4 (AtPIN4),Auxin efflux carrier component 1 (Protein PIN-FORMED) (AtPIN1),Auxin efflux carrier component DISRUPTION PHENOTYPE: Plants display altered embryo with defects in stereotypical pattern of early embryogenesis. {ECO:0000269|PubMed:14614497}.,DISRUPTION PHENOTYPE: Plants display defects in hypocotyl differential growth. {ECO:0000269|PubMed:11845211}.,DISRUPTION PHENOTYPE: Plants display altered patterning in the developing root meristem. {ECO:0000269|PubMed:11893337}.,DISRUPTION PHENOTYPE: Plants exhibit developed naked, pin-shaped inflorescences and abnormalities in the number, size, shape, and position of lateral organs. {ECO:0000269|PubMed:9856939}. Altered leaf venation pattern. Compared to the wild type vascular density of the first leaf in mutants was increased (Fig 7 in Alonso-Peral et al 2006).,Phenotype not described. Abnormal root gravitropism; Abnormal phototropism-K. Palme-2002,Embryo defective; Cotyledon; Abnormal seedling root cell patterning-K. Palme-2002,High penetrance of increased cotyledon number and abnormal cotyledon positioning; Naked, pin-shaped inflorescences; Abnormal leaf and flower number, morphology, and position-K. Palme-1998 FUNCTION: Acts as a component of the auxin efflux carrier (PubMed:14614497, PubMed:20439545). Mediates the initial auxin gradient which contributes to the establishment of the apical-basal axis in early embryogenesis (PubMed:14614497). {ECO:0000269|PubMed:14614497, ECO:0000269|PubMed:20439545}.,FUNCTION: Acts as a component of the auxin efflux carrier. Seems to be involved in the lateral auxin transport system and mediates tropic growth. Coordinated polar localization of PIN3 is directly regulated by the vesicle trafficking process. {ECO:0000269|PubMed:20439545}.,FUNCTION: Acts as a component of the auxin efflux carrier. Plays a role in generating a sink for auxin into columella cells. Maintains the endogenous auxin gradient, which is essential for correct root patterning. {ECO:0000269|PubMed:20439545}.,FUNCTION: Acts as a component of the auxin efflux carrier. Seems to be involved in the basipetal auxin transport. Mediates the formation of auxin gradient which is required to ensure correct organogenesis. Coordinated polar localization of PIN1 is directly regulated by the vesicle trafficking process and apical-basal PIN1 polarity also depends on the phosphorylation of conserved serine residues by PID kinase. The ARF-GEF protein GNOM is required for the correct recycling of PIN1 between the plasma membrane and endosomal compartments. {ECO:0000269|PubMed:14651850, ECO:0000269|PubMed:20407025, ECO:0000269|PubMed:20439545}.,FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000256|RuleBase:RU362108}. 67588,69466,66742,67019,67160,56589 Auxin efflux carrier component 7 (AtPIN7),Auxin efflux carrier component 3 (AtPIN3),Auxin efflux carrier component 4 (AtPIN4),Auxin efflux carrier component 1 (Protein PIN-FORMED) (AtPIN1),Auxin efflux carrier component endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; longitudinal axis specification [GO:0009942],cell surface [GO:0009986]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; lateral plasma membrane [GO:0016328]; plasma membrane [GO:0005886]; vesicle membrane [GO:0012506]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin efflux [GO:0010315]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; gravitropism [GO:0009630]; positive gravitropism [GO:0009958]; response to light stimulus [GO:0009416]; root development [GO:0048364]; root hair elongation [GO:0048767]; root hair initiation [GO:0048766]; tropism [GO:0009606],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; root development [GO:0048364],apical part of cell [GO:0045177]; basal plasma membrane [GO:0009925]; cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; auxin efflux transmembrane transporter activity [GO:0010329]; transporter activity [GO:0005215]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; cotyledon development [GO:0048825]; cotyledon morphogenesis [GO:0048826]; embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; gravitropism [GO:0009630]; inflorescence development [GO:0010229]; leaf formation [GO:0010338]; leaf shaping [GO:0010358]; photomorphogenesis [GO:0009640]; root development [GO:0048364]; shoot system development [GO:0048367]; xylem and phloem pattern formation [GO:0010051],integral component of membrane [GO:0016021]; auxin-activated signaling pathway [GO:0009734]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Expressed during early embryogenesis. Detected apically in the basal cell lineage resulting from the first zygotic division. At the 32-cell stage, localization shifts to the basal side of the cells in the developing embryo. {ECO:0000269|PubMed:14614497}.,DEVELOPMENTAL STAGE: Expressed during embryogenesis. Detected in the precursors of the columella root cells. {ECO:0000269|PubMed:14614497}.,DEVELOPMENTAL STAGE: Expressed during embryogenesis. Detected in the embryonic and seedling root meristems. {ECO:0000269|PubMed:14614497}.,DEVELOPMENTAL STAGE: Expressed during embryogenesis. Already detected in the 8-cell stage at the inner cell boundaries. Later, polarity is gradually established at the basal side of provascular cells then in epidermis cells. {ECO:0000269|PubMed:14614497}. TISSUE SPECIFICITY: Predominantly expressed at the lateral side of shoot endodermis cells as well as root pericycle and columella cells.,TISSUE SPECIFICITY: Expressed in the quiescent center precursors and surrounding cells. Detected in pollen (PubMed:22540348). {ECO:0000269|PubMed:22540348}.,TISSUE SPECIFICITY: Expressed at the basal side of elongated parenchymatous xylem cells. locus:2201225;,locus:2013975;,locus:2038781;,locus:2035037; AT1G23080,AT1G70940,AT2G01420,AT1G73590 auxin efflux carrier Probable auxin efflux carrier component 1c (OsPIN1c) (OsPIN1a),Auxin efflux carrier component 1a (OsPIN1a) (Auxin efflux carrier component 1) (OsPIN1) (Ethylene-insensitive root 1 homolog) (OsPIN1b),Auxin efflux carrier component 3a (OsPIN3a) (OSPIN10a) (OsPIN3t) Q67UL3,Q5SMQ9,Q5VP70 PIN1C_ORYSJ,PIN1A_ORYSJ,PIN3A_ORYSJ PIN1C Os06g0232300 LOC_Os06g12610 P0479H10.14,PIN1A PIN1 REH1 Os02g0743400 LOC_Os02g50960 OJ1734_E02.14 OsJ_08350 P0585G03.37,PIN3A Os01g0643300 LOC_Os01g45550 OsJ_02793 P0510C12.26-1 P0510C12.26-2 FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000305}.,FUNCTION: Acts as a component of the auxin efflux carrier. Seems to be involved in the polar auxin transport which may promote adventitious root emergence and control tillering. {ECO:0000269|PubMed:16085936}.,FUNCTION: Acts as a component of the auxin efflux carrier. Involved in the polar auxin transport which may regulate crown root development and response to water stress. {ECO:0000269|PubMed:22882529}. MISCELLANEOUS: Plants silencing PIN1A exhibit inhibition of the emergence and development of adventitious roots, increased number of tillers and enlarged tiller angles. {ECO:0000269|PubMed:16085936}.,MISCELLANEOUS: Seedlings silencing PIN3A display abnormal crown root development. Seedling over-expressing PIN3A exhibit better shoot growth, longer roots and a greater number of adventitious roots than the wild-type when grown on PEG-induced osmotic stress. {ECO:0000269|PubMed:22882529}. ENOG411DQRT FUS3 Q9LW31 FUS3_ARATH B3 domain-containing transcription factor FUS3 (Protein FUSCA3) DISRUPTION PHENOTYPE: Accumulation of anthocyanins in embryo. Presence of trichomes on cotyledons. Unusual pattern of storage product accumulation in embryos and cotyledons. {ECO:0000269|PubMed:12244252}. strongly impaired ability to induce somatic embryos in vitro Embryo defective; Leafy cotyledons-S. Misera-1998 FUNCTION: Transcription regulator involved in gene regulation during late embryogenesis. Its expression to the epidermis is sufficient to control foliar organ identity by regulating positively the synthesis abscisic acid (ABA) and negatively gibberellin production. Negatively regulates TTG1 in the embryo. Positively regulates the abundance of the ABI3 protein in the seed. {ECO:0000269|PubMed:14675433, ECO:0000269|PubMed:15363412}. 35616 B3 domain-containing transcription factor FUS3 (Protein FUSCA3) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; negative regulation of gibberellin biosynthetic process [GO:0010373]; positive regulation of abscisic acid biosynthetic process [GO:0010116]; positive regulation of cell proliferation [GO:0008284]; response to auxin [GO:0009733]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in developing embryo. At globular stage, expressed in all cells of the embryo proper. At heart stage, preferentially expressed in the protodermal tissue. In mature embryo, expressed in the provascular tissue, root cap and mature epidermis. Expressed in the aleurone layer in mature seed. {ECO:0000269|PubMed:14675433, ECO:0000269|PubMed:9807814}. locus:2088439; AT3G26790 B3 domain-containing transcription factor B3 domain-containing protein LFL1 (LEC2 and FUSCA3-like protein 1) (OsLFL1),Os01g0713600 protein A4LBC0,A0A0P0V7F2 LFL1_ORYSJ,A0A0P0V7F2_ORYSJ LFL1 Os01g0713600 LOC_Os01g51610 B1142C05.32,Os01g0713600 OSNPB_010713600 FUNCTION: Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. MISCELLANEOUS: Plants overexpressing LFL1 show a late-flowering phenotype. ENOG411ECDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0786600 protein,OJ000223_09.16 protein (OJ991113_30.1 protein) (Os04g0486700 protein),Os04g0483900 protein,Os04g0484066 protein Q6K4Q4,Q7X790,A0A0P0WBQ9,A0A0P0WBY3 Q6K4Q4_ORYSJ,Q7X790_ORYSJ,A0A0P0WBQ9_ORYSJ,A0A0P0WBY3_ORYSJ Os02g0786600 OJ1316_E06.16 OSJNBa0054K20.2 OSNPB_020786600,OJ000223_09.16 Os04g0486700 OJ991113_30.1 OsJ_15253 OSNPB_040486700,Os04g0483900 OSNPB_040483900,Os04g0484066 OSNPB_040484066 ENOG411E2Z9 Q1PF74 Q1PF74_ARATH Nuclease 39164 Nuclease hydrolase activity, acting on ester bonds [GO:0016788] locus:2040446; AT2G13770 Plant transposon protein Os12g0543751 protein A0A0P0YB47 A0A0P0YB47_ORYSJ Os12g0543751 OSNPB_120543751 ENOG411E2Z8 Q9SJH8,F4IP79 Q9SJH8_ARATH,F4IP79_ARATH At2g42780/F7D19.22 (Expressed protein) (Transcription elongation factor B polypeptide) (Uncharacterized protein At2g42780),Transcription elongation factor B polypeptide 33080,28814 At2g42780/F7D19.22 (Expressed protein) (Transcription elongation factor B polypeptide) (Uncharacterized protein At2g42780),Transcription elongation factor B polypeptide integral component of membrane [GO:0016021]; nucleus [GO:0005634]; translation elongation factor activity [GO:0003746]; regulation of transcription, DNA-templated [GO:0006355] locus:2052391; AT2G42780 RNA polymerase II transcription factor SIII (Elongin) subunit A Os08g0169600 protein Q0J7R4 Q0J7R4_ORYSJ Os08g0169600 Os08g0169600 OSNPB_080169600 ENOG411E2Z2 TIM22-3,TIM22-2 Q6NKU9,Q94EH2 TI223_ARATH,TI222_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3,Mitochondrial import inner membrane translocase subunit TIM22-2 FUNCTION: Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. {ECO:0000250}.,FUNCTION: Together with HP30-1 and HP30-2, triggers the import and insertion of transit sequence-less multi-pass transmembrane proteins (e.g. CEQORH) into the chloroplastic inner membrane. {ECO:0000269|PubMed:24248378}. 22524,21811 Mitochondrial import inner membrane translocase subunit TIM22-3,Mitochondrial import inner membrane translocase subunit TIM22-2 chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; protein channel activity [GO:0015266]; protein localization to organelle [GO:0033365],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; protein channel activity [GO:0015266]; protein localization to organelle [GO:0033365] DEVELOPMENTAL STAGE: Peak of expression during cotyledon development. {ECO:0000269|PubMed:12692332}. TISSUE SPECIFICITY: Expressed in young cotyledons, roots, flowers and leaves. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}.,TISSUE SPECIFICITY: Expressed in young cotyledons, roots, leaves and flowers. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}. locus:2173907;,locus:2116367; AT5G55510,AT4G26670 Mitochondrial import inner membrane translocase subunit Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed (Os12g0514900 protein) (cDNA clone:J033076H08, full insert sequence) Q2QPW9 Q2QPW9_ORYSJ Os12g0514900 LOC_Os12g33020 Os12g0514900 OSNPB_120514900 ENOG411E2Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os06g0725800 protein Q5Z975 Q5Z975_ORYSJ P0548E04.19 Os06g0725800 OSNPB_060725800 ENOG411E2Z0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox protein knotted-1-like Homeobox protein knotted-1-like 1 (Homeobox protein HOS16) (Homeobox protein OSH6),Homeobox protein knotted-1-like 10 (Homeobox protein HOS9) (Homeobox protein OSH71) (Homeobox protein knotted-1-like 2) (Oskn2) Q9FP29,Q7GDL5 KNOS1_ORYSJ,KNOSA_ORYSJ OSH6 HOS16 Os01g0302500 LOC_Os01g19694 B1146F03.18 P0035H10.13,OSH71 HOS9 Os05g0129700 LOC_Os05g03884 OSJNBa0056I11.15 FUNCTION: Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.,FUNCTION: Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. ENOG411E2Z6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0572200 protein (Putative RING-H2 zinc finger protein ATL6) (cDNA clone:002-137-C02, full insert sequence) Q6Z5I5 Q6Z5I5_ORYSJ Os02g0572200 Os02g0572200 OSNPB_020572200 P0689H05.43 ENOG411E2Z5 ARF31,ARF32,DPA4,ABS2 Q8GYJ2,Q8RYD3,Q9FNI3,A0A1P8BF49,A0A1P8BF30,A0A1P8AZR1,A0A1I9LT60,A0A1P8BF34 Y2608_ARATH,Y3158_ARATH,Y5625_ARATH,A0A1P8BF49_ARATH,A0A1P8BF30_ARATH,A0A1P8AZR1_ARATH,A0A1I9LT60_ARATH,A0A1P8BF34_ARATH B3 domain-containing protein At2g36080 (Protein AUXIN RESPONSIVE FACTOR 31),B3 domain-containing protein At3g11580 (Protein AUXIN RESPONSE FACTOR 32),B3 domain-containing protein At5g06250,AP2/B3-like transcriptional factor family protein 28435,30217,31649,30233,29734,27365,42954,31885 B3 domain-containing protein At2g36080 (Protein AUXIN RESPONSIVE FACTOR 31),B3 domain-containing protein At3g11580 (Protein AUXIN RESPONSE FACTOR 32),B3 domain-containing protein At5g06250,AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of transcription, DNA-templated [GO:0045892]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; glucosinolate metabolic process [GO:0019760]; regulation of seed growth [GO:0080113]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; leaf development [GO:0048366]; leaf shaping [GO:0010358]; meristem maintenance [GO:0010073]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2039165;,locus:2080782;,locus:2164215; AT2G36080,AT3G11580,AT5G06250 B3 domain-containing protein B3 domain-containing protein Os11g0156000,Os12g0157000 protein (Fragment),Os11g0156000 protein (Fragment) Q53QI0,C7JAA9,A0A0P0XZ58 Y1160_ORYSJ,C7JAA9_ORYSJ,A0A0P0XZ58_ORYSJ Os11g0156000 LOC_Os11g05740,Os12g0157000 Os12g0157000 OSNPB_120157000,Os11g0156000 OSNPB_110156000 ENOG411E2Z4 OEP161 Q9ZV24 OP161_ARATH Outer envelope pore protein 16-1, chloroplastic (Chloroplastic outer envelope pore protein of 16 kDa 1) (AtOEP16-1) (OEP16-1) (Outer plastid envelope protein 16-L) (AtOEP16-L) (Leave outer plastid envelope protein 16) (Protochlorophyllide-dependent translocon protein 16) (Ptc16) DISRUPTION PHENOTYPE: Strong red Pchlide fluorescence after 3.5-4 days of growth in the dark, and cell death after subsequent illumination. Conditional seedling lethal phenotype related to defects in import and assembly of NADPH:protochlorophyllide (Pchlide) oxidoreductase A; excess Pchlide accumulated in the dark operates as photosensitizer and provokes cell death during greening. {ECO:0000269|PubMed:17261815, ECO:0000269|PubMed:19567834, ECO:0000269|PubMed:21098556, ECO:0000269|PubMed:21098557}. Rapidly bleached and finally died if grown in darkness and exposed to white light. No phenotype of kept under continuous white light right from the begining of germination. Seedling lethal unless grown under continuous light-S. Reinbothe-2007 FUNCTION: Voltage-dependent high-conductance channel with a slight cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB. Involved in PORA precursor (pPORA) import and thus confers photoprotection onto etiolated seedlings during greening. {ECO:0000250, ECO:0000269|PubMed:14769929, ECO:0000269|PubMed:17202255, ECO:0000269|PubMed:17261815, ECO:0000269|PubMed:19567834, ECO:0000269|PubMed:21098556, ECO:0000269|PubMed:21098557}. 15482 Outer envelope pore protein 16-1, chloroplastic (Chloroplastic outer envelope pore protein of 16 kDa 1) (AtOEP16-1) (OEP16-1) (Outer plastid envelope protein 16-L) (AtOEP16-L) (Leave outer plastid envelope protein 16) (Protochlorophyllide-dependent translocon protein 16) (Ptc16) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; etioplast membrane [GO:0034426]; integral component of mitochondrial inner membrane [GO:0031305]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; plastid [GO:0009536]; plastid outer membrane [GO:0009527]; pore complex [GO:0046930]; vacuole [GO:0005773]; amino acid transmembrane transporter activity [GO:0015171]; porin activity [GO:0015288]; protein channel activity [GO:0015266]; protein domain specific binding [GO:0019904]; protein homodimerization activity [GO:0042803]; protein import into chloroplast stroma [GO:0045037]; protein import into mitochondrial matrix [GO:0030150]; response to cold [GO:0009409]; response to glucose [GO:0009749]; response to jasmonic acid [GO:0009753]; response to sucrose [GO:0009744]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed predominantly in leaves and cotyledons. {ECO:0000269|PubMed:16709189, ECO:0000269|PubMed:17202255}. locus:2053185; AT2G28900 Tim17/Tim22/Tim23/Pmp24 family NA NA NA NA NA NA NA ENOG411E2ZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin family Os01g0907200 protein A0A0P0VC20 A0A0P0VC20_ORYSJ Os01g0907200 OSNPB_010907200 ENOG411E2ZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor MADS-box transcription factor 50 (OsMADS50) (Protein AGAMOUS-like 20) (Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like) (OsSOC1) (RMADS208) Q9XJ60 MAD50_ORYSJ MADS50 AGL20 SOC1 Os03g0122600 LOC_Os03g03070 OJ1126B12.8 DISRUPTION PHENOTYPE: Late-flowering phenotype and elongated internodes. {ECO:0000269|PubMed:15144377}. FUNCTION: Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. MISCELLANEOUS: Early flowering phenotype is observed in overexpressing plants. ENOG411E2ZS ENA Q9LUM9,F4J6C9 Q9LUM9_ARATH,F4J6C9_ARATH Tetratricopeptide repeat (TPR)-containing protein 25417,27895 Tetratricopeptide repeat (TPR)-containing protein locus:2090532; AT3G17670 NA NA NA NA NA NA NA NA ENOG411E2ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent PAP2 family OJ991113_30.3 protein (Os04g0486900 protein) Q7FAB1 Q7FAB1_ORYSJ Os04g0486900 OJ991113_30.3 OsJ_15255 OSNPB_040486900 ENOG411E2ZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling Probable histone H2A.7,Probable histone H2A.1 Q2QS71,Q6ZL43 H2A7_ORYSJ,H2A1_ORYSJ Os12g0438000 LOC_Os12g25120,Os07g0545300 LOC_Os07g36130 OJ1582_D10.25 OsJ_023673 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. ENOG411E2ZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain containing protein C2 domain-containing protein-like (Os02g0815100 protein) (cDNA clone:002-151-A04, full insert sequence) Q6K8N6 Q6K8N6_ORYSJ Os02g0815100 Os02g0815100 OJ1293_E04.27 OSNPB_020815100 ENOG411E2ZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF936) Os11g0265300 protein A0A0P0Y0Y6 A0A0P0Y0Y6_ORYSJ Os11g0265300 OSNPB_110265300 ENOG411E2ZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance response Dirigent protein A3BFT9,Q7EXY2,Q8LH34 A3BFT9_ORYSJ,Q7EXY2_ORYSJ,Q8LH34_ORYSJ Os07g0106700 OsJ_22807 OSNPB_070106700,B1317D11.129 Os07g0107100 OSNPB_070107100,P0617C02.132 B1317D11.127 Os07g0106900 OSNPB_070106900 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E2ZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XH domain Os01g0147400 protein A0A0P0UYW6 A0A0P0UYW6_ORYSJ Os01g0147400 OSNPB_010147400 ENOG411E2ZT A0A1P8B1Z2,A8MQN6 A0A1P8B1Z2_ARATH,A8MQN6_ARATH PLATZ transcription factor family protein 18148,25905 PLATZ transcription factor family protein intracellular [GO:0005622]; zinc ion binding [GO:0008270] locus:4010713610; AT2G01818 PLATZ transcription factor NA NA NA NA NA NA NA ENOG411E2ZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early nodulin-like protein Early nodulin-like protein 1 (OsENODL1) (Phytocyanin-like protein) Q5JNJ5 ENL1_ORYSJ ENODL1 Os01g0748150 LOC_Os01g54430 P0481E12.22 ENOG411E2ZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os05g0584300 protein (Unknow protein) (cDNA clone:001-111-H05, full insert sequence) Q75HZ1 Q75HZ1_ORYSJ Os05g0584300 Os05g0584300 OsJ_19701 OSJNBa0009C07.2 OSJNBb0035N21.3 OSNPB_050584300 ENOG411E2ZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CS domain Uncharacterized protein Os08g0359500 Q6YYB0 Y8359_ORYSJ Os08g0359500 LOC_Os08g27070 OJ1014_E02.2 OsJ_025957 P0488B06.44 ENOG411E2ZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) Os04g0340800 protein,Os07g0212400 protein,Os10g0343500 protein (Fragment),Os02g0129000 protein,Os08g0367300 protein,Os04g0340800 protein (Fragment),Os05g0202500 protein Q0JE21,Q0D7T0,A0A0P0XTC2,A0A0P0VE85,A0A0P0XF83,A0A0P0W8U6,A0A0P0WJ23 Q0JE21_ORYSJ,Q0D7T0_ORYSJ,A0A0P0XTC2_ORYSJ,A0A0P0VE85_ORYSJ,A0A0P0XF83_ORYSJ,A0A0P0W8U6_ORYSJ,A0A0P0WJ23_ORYSJ Os04g0340800 Os04g0340800 OSNPB_040340800,Os07g0212400 Os07g0212400 OSNPB_070212400,Os10g0343500 OSNPB_100343500,Os02g0129000 OSNPB_020129000,Os08g0367300 OSNPB_080367300,Os04g0340800 OSNPB_040340800,Os05g0202500 OSNPB_050202500 ENOG411E2ZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0458200 protein (Putative MTD1) Q6ZC09 Q6ZC09_ORYSJ Os08g0458200 OSNPB_080458200 P0493A04.15 ENOG411E2ZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 Os06g0651300 protein (cDNA clone:J033074H23, full insert sequence) Q67UQ0 Q67UQ0_ORYSJ Os06g0651300 OSNPB_060651300 P0453H04.38 ENOG411E2ZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0151600 protein Q84PW5 Q84PW5_ORYSJ P0443G08.136 OJ1349_D05.104 Os08g0151600 OSNPB_080151600 ENOG411E2ZB GAT1,ATHM3 Q9SEU7,F4IIH6 TRXM3_ARATH,F4IIH6_ARATH Thioredoxin M3, chloroplastic (AtTrxm3) (Protein GFP ARRESTED TRAFFICKING 1),Thioredoxin superfamily protein DISRUPTION PHENOTYPE: Seedling lethality when homozygous. Increased callose deposition and accumulation of reactive oxygen species in roots. {ECO:0000269|PubMed:19218459}. Dwarf; Pale green-J. Balk-2009 FUNCTION: Thiol-disulfide oxidoreductase required for maintaining symplastic permeability in the meristem. Involved in redox regulation of callose deposition, plasmodesmata cell-to-cell communication and meristem maintenance. {ECO:0000269|PubMed:19218459, ECO:0000269|PubMed:19820302}. 19500,19571 Thioredoxin M3, chloroplastic (AtTrxm3) (Protein GFP ARRESTED TRAFFICKING 1),Thioredoxin superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; plasmodesmata-mediated intercellular transport [GO:0010497]; positive regulation of cell communication [GO:0010647]; regulation of meristem development [GO:0048509],cell [GO:0005623]; enzyme activator activity [GO:0008047]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; glycerol ether metabolic process [GO:0006662]; positive regulation of catalytic activity [GO:0043085] DEVELOPMENTAL STAGE: Expressed during embryogenesis in the root meristem at the transition from heart to torpedo stage. At the cotyledon stage, expressed in root and shoot meristems, with weak expression in provascular tissues. Expressed later in the seedling root meristem, shoot apex, and vasculature. During flowering, expressed in inflorescence and floral meristems, and in petal, stamen, and carpel primordia. {ECO:0000269|PubMed:19218459}. locus:2053573; AT2G15570 Thioredoxin Thioredoxin M3, chloroplastic (OsTrxm3) (OsTrx11),Os04g0430800 protein (Fragment) Q7XQQ2,A0A0P0WAV0 TRXM3_ORYSJ,A0A0P0WAV0_ORYSJ Os04g0430800 LOC_Os04g35150 OSJNBa0084A10.3,Os04g0430800 OSNPB_040430800 FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of chloroplastic enzymes. ENOG411E2ZA RAT5 Q9C681,O81826,Q9LD28,Q9LHQ5 H2A1_ARATH,H2A3_ARATH,H2A6_ARATH,H2A2_ARATH Probable histone H2A.1 (HTA10),Probable histone H2A.3 (HTA2),Histone H2A.6 (HTA1) (Protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 5),Probable histone H2A.2 (HTA13) Resistant to Agrobacterium root transformation-S. Gelvin-2000 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.,FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Required for the T-DNA integration step of plant transformation by Agrobacterium. May play an important role in illegitimate recombination. {ECO:0000269|PubMed:10639185, ECO:0000269|PubMed:12410808}. MISCELLANEOUS: RAT5 is required for Agrobacterium-mediated transformation of root but not of germ-lime tissues. 13934,13833,13658,13849 Probable histone H2A.1 (HTA10),Probable histone H2A.3 (HTA2),Histone H2A.6 (HTA1) (Protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 5),Probable histone H2A.2 (HTA13) cell wall [GO:0005618]; nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342],nuclear chromatin [GO:0000790]; nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342],nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342]; DNA mediated transformation [GO:0009294]; response to bacterium [GO:0009617]; response to wounding [GO:0009611],nuclear chromatin [GO:0000790]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342] TISSUE SPECIFICITY: Low level of expression; mainly in roots. Found in the root cap cells and in non dividing tissues of the plant, including the root elongation and maturation zones and the leaf veins. {ECO:0000269|PubMed:16751347}.,TISSUE SPECIFICITY: Expressed in meristems and dividing cells. {ECO:0000269|PubMed:16751347}.,TISSUE SPECIFICITY: Low level of expression, mainly in dividing tissues: floral buds, margins of newly emerging leaves, expanding leaves and the meristematic zone of root tips. Also expressed in many non-dividing cells of the elongation zone of the root. {ECO:0000269|PubMed:12410808, ECO:0000269|PubMed:16751347}.,TISSUE SPECIFICITY: Expressed mainly in non-dividing tissues of the plant. Also found in meristems and dividing cells. {ECO:0000269|PubMed:16751347}. locus:2026032;,locus:2131704;,locus:2172119;,locus:2083430; AT1G51060,AT4G27230,AT5G54640,AT3G20670 histone h2a Probable histone H2A.2,Probable histone H2A.3 Q6ZL42,Q84NJ4 H2A2_ORYSJ,H2A3_ORYSJ Os07g0545400 LOC_Os07g36140 OJ1582_D10.26 OsJ_023674,Os08g0427700 LOC_Os08g33100 OJ1663_D06.11 OsJ_026285 OSJNBb0032E15.118 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. ENOG411E2ZG Q1PFW1,B3H538 Q1PFW1_ARATH,B3H538_ARATH Seed dormancy control protein 35219,33076 Seed dormancy control protein integral component of membrane [GO:0016021]; sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351] locus:2037813; AT1G15320 NA NA NA NA NA NA NA NA ENOG411E2ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF579 Expressed protein (Os11g0242600 protein) Q53N85 Q53N85_ORYSJ LOC_Os11g13870 Os11g0242600 OSNPB_110242600 ENOG411E2PT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Arginine/serine-rich splicing factor, putative, expressed (Os03g0388000 protein) (Putative splicing factor (Having alternative splicing products)) (cDNA clone:001-105-F02, full insert sequence),Arginine/serine-rich splicing factor, putative, expressed (Os03g0388000 protein) (Putative splicing factor (Having alternative splicing products)) Q6AVF3,Q6AVF4 Q6AVF3_ORYSJ,Q6AVF4_ORYSJ Os03g0388000 LOC_Os03g27030 OSJNBb0058G04.5 OSNPB_030388000,LOC_Os03g27030 Os03g0388000 OsJ_11097 OSJNBb0058G04.5 OSNPB_030388000 ENOG411E9Q5 Q93W23 Q93W23_ARATH At1g63720/F24D7_9 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At1g63720) 38979 At1g63720/F24D7_9 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At1g63720) locus:2026664; AT1G63720 NA NA NA NA NA NA NA NA ENOG411E9Q4 PBL1 Q8H186,F4IWV6 PBL1_ARATH,F4IWV6_ARATH Probable serine/threonine-protein kinase PBL1 (EC 2.7.11.1) (BIK1-like protein kinase) (PBS1-like protein 1),PBS1-like 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20413097}. FUNCTION: Contributes to pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) signaling and defense responses downstream of FLS2. Acts additively with BIK1 in PTI defenses (PubMed:20413097). Seems not required for flg22-induced MAPK activation (Probable). Required for Pep1-induced defenses. Pep1 is an endogenous elicitor that potentiates PAMP-inducible plant responses (PubMed:23431184). {ECO:0000269|PubMed:20413097, ECO:0000269|PubMed:23431184, ECO:0000305|PubMed:22504181}. 2.7.11.1 43087,47345 Probable serine/threonine-protein kinase PBL1 (EC 2.7.11.1) (BIK1-like protein kinase) (PBS1-like protein 1),PBS1-like 1 plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2099916; AT3G55450 STYKc NA NA NA NA NA NA NA ENOG411E9Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA regulator of chromosome condensation (RCC1) family protein NA NA NA NA NA NA NA ENOG411E9Q6 A0A1P8AWX0 A0A1P8AWX0_ARATH S-locus glycoprotein family protein 19214 S-locus glycoprotein family protein S-locus glycoprotein family NA NA NA NA NA NA NA ENOG411E9Q1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os06g0725200 protein Q0D9D9 Q0D9D9_ORYSJ Os06g0725200 Os06g0725200 OSNPB_060725200 ENOG411E9Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os11g0569701 protein A0A0P0Y3H2 A0A0P0Y3H2_ORYSJ Os11g0569701 OSNPB_110569701 ENOG411E9Q3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SpoU rRNA Methylase family NA NA NA NA NA NA NA ENOG411E9Q2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411E9Q9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase family NA NA NA NA NA NA NA ENOG411E9Q8 RPS6,MDJ22.11 F4KHH8,A0A1P8BBU6,Q9FNJ2,Q9FHF5,O81430,A0A1P8BDK2 RPS6C_ARATH,A0A1P8BBU6_ARATH,Q9FNJ2_ARATH,Q9FHF5_ARATH,O81430_ARATH,A0A1P8BDK2_ARATH Disease resistance protein RPS6 (Resistance to Pseudomonas syringae 6),Protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Putative RPP1-like disease resistance protein (T24H24.18 protein) (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein (TIR-NBS-LRR class) family Susceptible to Pseudomonas syringae-W. Gassmann-2009 FUNCTION: Disease resistance (R) protein that specifically recognizes the hopA1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. {ECO:0000269|PubMed:19525323}. MISCELLANEOUS: Ecotype cv. Columbia does not respond with a hypersensitive response to hopA1. {ECO:0000305|PubMed:19525323}. 128271,45591,115166,46966,27793,115220 Disease resistance protein RPS6 (Resistance to Pseudomonas syringae 6),Protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Putative RPP1-like disease resistance protein (T24H24.18 protein) (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein (TIR-NBS-LRR class) family ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to bacterium [GO:0042742]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165],signal transduction [GO:0007165] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000305|PubMed:19525323}. locus:2151506;,locus:2162439;,locus:2151521;,locus:2136637; AT5G46470,AT5G22690,AT5G46500,AT4G04110 TIR NA NA NA NA NA NA NA ENOG411E9QE PAL4 Q9SS45 PAL4_ARATH Phenylalanine ammonia-lyase 4 (EC 4.3.1.24) FUNCTION: This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton. PATHWAY: Phenylpropanoid metabolism; trans-cinnamate biosynthesis; trans-cinnamate from L-phenylalanine: step 1/1. R-ATH-70921; 4.3.1.24; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 4.3.1.24 76920 Phenylalanine ammonia-lyase 4 (EC 4.3.1.24) cytoplasm [GO:0005737]; phenylalanine ammonia-lyase activity [GO:0045548]; cinnamic acid biosynthetic process [GO:0009800]; L-phenylalanine catabolic process [GO:0006559] locus:2076244; AT3G10340 Phenylalanine ammonia-lyase NA NA NA NA NA NA NA ENOG411E9QD MBD2.5 Q9FMN3,Q9C636 Q9FMN3_ARATH,Q9C636_ARATH Emb|CAB53482.1 (Late embryogenesis abundant protein, group 2) (Uncharacterized protein At5g42860),Transmembrane protein (Uncharacterized protein At1g45688) (Uncharacterized protein F2G19.25) 35023,37201 Emb|CAB53482.1 (Late embryogenesis abundant protein, group 2) (Uncharacterized protein At5g42860),Transmembrane protein (Uncharacterized protein At1g45688) (Uncharacterized protein F2G19.25) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; microtubule binding [GO:0008017] locus:2160026;,locus:2825837; AT5G42860,AT1G45688 NA NA NA NA NA NA NA NA ENOG411E9QG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: exportin Os11g0519500 protein,Os11g0517800 protein A0A0P0Y2I8,A0A0P0Y2Z8 A0A0P0Y2I8_ORYSJ,A0A0P0Y2Z8_ORYSJ Os11g0519500 OSNPB_110519500,Os11g0517800 OSNPB_110517800 ENOG411E9QF LNG1 Q9LF24 LNG1_ARATH Protein LONGIFOLIA 1 (Protein TON1 RECRUITING MOTIF 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the lng1 and lng2 double mutant shows reduced length of cotyledons, rosette leaves, siliques and flowers. {ECO:0000269|PubMed:17038516}. FUNCTION: In association with LNG2, regulates leaf morphology by promoting longitudinal polar cell elongation independently of ROT3. {ECO:0000269|PubMed:17038516}. MISCELLANEOUS: The gain-of-function mutant lng1-1D (T-DNA tagging) shows increased elongation of aerial lateral organs, partly due to elongated cells in leaves, petals and siliques. {ECO:0000305|PubMed:17038516}. 104088 Protein LONGIFOLIA 1 (Protein TON1 RECRUITING MOTIF 2) cytosol [GO:0005829]; nucleus [GO:0005634]; regulation of monopolar cell growth [GO:0051513] TISSUE SPECIFICITY: Expressed in roots, petioles, leaf blades and floral organs. {ECO:0000269|PubMed:17038516}. locus:2180857; AT5G15580 NA NA NA NA NA NA NA NA ENOG411E9QA Q7G9E7,Q9SSQ2 FB54_ARATH,FB55_ARATH Putative F-box protein At1g52490,F-box protein At1g52495 24350,49953 Putative F-box protein At1g52490,F-box protein At1g52495 AT1G52490,AT1G52495 F-box associated domain NA NA NA NA NA NA NA ENOG411E9QC BGLU18 Q9SE50 BGL18_ARATH Beta-D-glucopyranosyl abscisate beta-glucosidase (EC 3.2.1.175) (Beta-glucosidase 1) (AtBG1) (Beta-glucosidase 18) (AtBGLU18) (Beta-glucosidase homolog 1) DISRUPTION PHENOTYPE: Reduced growth, yellow leaf, defective stomatal closure in the dark, increased transpirational water loss, sensitive response to dehydration, lower germination efficiency and decreased ABA levels. {ECO:0000269|PubMed:16990135}. Complete loss of wound-induced ER body formation-M. Nishimura-2009 FUNCTION: Hydrolyzes abscisic acid glucose ester (ABA-GE) which represents the predominant form of conjugated ABA (biologically inactive). No activity with beta-D-glucopyranosyl zeatin. The hydrolysis of ABA-GE in the endoplasmic reticulum (ER) forms free ABA and contributes to increase its cellular levels under dehydration conditions. ABA-GE hydrolyzing activity is enhanced by dehydration stress-induced polymerization into higher molecular weight forms. The ABA produced by BGLU18 contributes to the initiation of intracellular signaling as well as the increase in the extracellular ABA level. {ECO:0000269|PubMed:16990135, ECO:0000269|PubMed:17923167}. MISCELLANEOUS: Polymerization into higher molecular weight forms displays diurnal fluctuation, similar to the ABA level. ARA:AT1G52400-MONOMER;MetaCyc:AT1G52400-MONOMER; R-ATH-189085; 3.2.1.175; 3.2.1.175 60459 Beta-D-glucopyranosyl abscisate beta-glucosidase (EC 3.2.1.175) (Beta-glucosidase 1) (AtBG1) (Beta-glucosidase 18) (AtBGLU18) (Beta-glucosidase homolog 1) chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; ER body [GO:0010168]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; abscisic acid glucose ester beta-glucosidase activity [GO:0051993]; beta-glucosidase activity [GO:0008422]; identical protein binding [GO:0042802]; abscisic acid metabolic process [GO:0009687]; abscisic acid-activated signaling pathway [GO:0009738]; carbohydrate metabolic process [GO:0005975]; defense response to fungus [GO:0050832]; glycosyl compound metabolic process [GO:1901657]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; protein polymerization [GO:0051258]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to insect [GO:0009625]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; water homeostasis [GO:0030104] TISSUE SPECIFICITY: Seeds and hydathodes of rosette and cauline leaves. {ECO:0000269|PubMed:16990135}. locus:2018179; AT1G52400 beta glucosidase 18 NA NA NA NA NA NA NA ENOG411E9QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9QM CNGC3,CNGC11 Q9SKD7,A0A1P8B370 CNGC3_ARATH,A0A1P8B370_ARATH Probable cyclic nucleotide-gated ion channel 3 (AtCNGC3) (Cyclic nucleotide- and calmodulin-regulated ion channel 3),Cyclic nucleotide-gated channels FUNCTION: Probable cyclic nucleotide-gated ion channel. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 81669,51037 Probable cyclic nucleotide-gated ion channel 3 (AtCNGC3) (Cyclic nucleotide- and calmodulin-regulated ion channel 3),Cyclic nucleotide-gated channels integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] locus:2039084; AT2G46430 cyclic nucleotide gated channel NA NA NA NA NA NA NA ENOG411E9QN SQE2,SQE3 O81000,Q8VYH2 ERG15_ARATH,ERG16_ARATH Squalene epoxidase 2, mitochondrial (AtSQE2) (EC 1.14.14.17),Squalene epoxidase 3 (AtSQE3) (EC 1.14.14.17) FUNCTION: Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway. Produces primarily oxidosqualene. {ECO:0000269|PubMed:17426032}.,FUNCTION: Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway. Can produce not only oxidosqualene, but also 2,3:22,23-dioxidosqualene. {ECO:0000269|PubMed:17426032}. PATHWAY: Terpene metabolism; lanosterol biosynthesis; lanosterol from farnesyl diphosphate: step 2/3. R-ATH-191273; 1.14.13.132; 1.14.14.17 64792,57099 Squalene epoxidase 2, mitochondrial (AtSQE2) (EC 1.14.14.17),Squalene epoxidase 3 (AtSQE3) (EC 1.14.14.17) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; sterol biosynthetic process [GO:0016126] TISSUE SPECIFICITY: Expressed mainly in inflorescences. Detected in seedlings, leaves, stems, and siliques. {ECO:0000269|PubMed:17426032}.,TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, inflorescences and siliques. {ECO:0000269|PubMed:17426032}. locus:2059196;,locus:2137569; AT2G22830,AT4G37760 Squalene epoxidase NA NA NA NA NA NA NA ENOG411E9QI RBL4 F4JBM4,A0A1I9LM07 RBL4_ARATH,A0A1I9LM07_ARATH RHOMBOID-like protein 4 (AtRBL4) (EC 3.4.21.-),Rhomboid-like protein (EC 3.4.21.-) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:22007993}. 3.4.21.- 43508,34467 RHOMBOID-like protein 4 (AtRBL4) (EC 3.4.21.-),Rhomboid-like protein (EC 3.4.21.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; serine-type endopeptidase activity [GO:0004252],integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2084465; AT3G53780 Rhomboid family NA NA NA NA NA NA NA ENOG411E9QH FUT9 Q9XI77 FUT9_ARATH Probable fucosyltransferase 9 (AtFUT9) (EC 2.4.1.-) FUNCTION: May be involved in cell wall biosynthesis. May act as a fucosyltransferase. PATHWAY: Protein modification; protein glycosylation. ARA:AT1G14110-MONOMER; 2.4.1.- 54476 Probable fucosyltransferase 9 (AtFUT9) (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Expressed in leaves and stems. {ECO:0000269|PubMed:11743104}. locus:2035824; AT1G14110 Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411E9QK T1G12.2 Q9SG17,A0A1I9LPM9 Q9SG17_ARATH,A0A1I9LPM9_ARATH Metal-dependent protein hydrolase (Uncharacterized protein F2K15.180) (Uncharacterized protein T1G12.2),Metal-dependent protein hydrolase 40691,29537 Metal-dependent protein hydrolase (Uncharacterized protein F2K15.180) (Uncharacterized protein T1G12.2),Metal-dependent protein hydrolase hydrolase activity [GO:0016787] locus:2082981; AT3G49320 Uncharacterised protein family (UPF0160) NA NA NA NA NA NA NA ENOG411E9QJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9QU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative lysophospholipase NA NA NA NA NA NA NA ENOG411E9QT BASS5,BAT5 F4JPW1,A0A1P8B530 BASS5_ARATH,A0A1P8B530_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic (Bile acid transporter 5) (Bile acid-sodium symporter family protein 5),Bile acid transporter 5 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants contain reduced levels of aliphatic glucosinolates. {ECO:0000269|PubMed:19542295, ECO:0000269|PubMed:19633020}. Contain Reduced Levels of Aliphatic Glucosinolates Elevated methionine levels; Low levels of methionine-derived glucosinolates; No other phenotypes detected-M. Hirai-2009 FUNCTION: Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates. {ECO:0000269|PubMed:19542295, ECO:0000269|PubMed:19633020}. R-ATH-425366; 44582,34141 Probable sodium/metabolite cotransporter BASS5, chloroplastic (Bile acid transporter 5) (Bile acid-sodium symporter family protein 5),Bile acid transporter 5 chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; transporter activity [GO:0005215]; glucosinolate biosynthetic process [GO:0019761]; glucosinolate biosynthetic process from homomethionine [GO:0033506]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:19542295}. locus:2118021; AT4G12030 bile acid sodium symporter family protein NA NA NA NA NA NA NA ENOG411E9QW SAL4,SAL2 Q84VY5,O49623,A0A1P8BGY0 DPNP4_ARATH,DPNP2_ARATH,A0A1P8BGY0_ARATH Probable SAL4 phosphatase (3'(2'),5'-bisphosphate nucleotidase 4) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 4) (DPNPase 4) (Inositol polyphosphate 1-phosphatase 4) (IPPase 4) (Inositol-1,4-bisphosphate 1-phosphatase 4) (EC 3.1.3.57),SAL2 phosphatase (3'(2'),5'-bisphosphate nucleotidase 2) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 2) (DPNPase 2) (Inositol polyphosphate 1-phosphatase 2) (IPPase 2) (Inositol-1,4-bisphosphate 1-phosphatase 2) (EC 3.1.3.57),Inositol monophosphatase family protein FUNCTION: Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP. Is also able to hydrolyze inositol 1,4-bisphosphate. {ECO:0000250}.,FUNCTION: Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP. May regulate the flux of sulfur in the sulfur-activation pathway by converting PAPS to APS (By similarity). Prevents both the toxicity of PAP on RNA processing enzymes as well as the product inhibition by PAP of sulfate conjugation. Is also able to hydrolyze inositol 1,4-bisphosphate. {ECO:0000250, ECO:0000269|PubMed:10205895}. MISCELLANEOUS: Substrate preference is 3'-phosphoadenosine 5'-phosphate (PAP) > adenosine 3'-phosphate 5'-phosphosulfate (PAPS)>> inositol 1,4-bisphosphate. No activity observed against 3' or 5'-AMP, inositol monophosphate and fructose-1,6-bisphosphate. PATHWAY: Signal transduction; phosphatidylinositol signaling pathway. ARA:AT5G09290-MONOMER;,ARA:AT5G64000-MONOMER; 3.1.3.7; 3.1.3.57 37489,37509,32691 Probable SAL4 phosphatase (3'(2'),5'-bisphosphate nucleotidase 4) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 4) (DPNPase 4) (Inositol polyphosphate 1-phosphatase 4) (IPPase 4) (Inositol-1,4-bisphosphate 1-phosphatase 4) (EC 3.1.3.57),SAL2 phosphatase (3'(2'),5'-bisphosphate nucleotidase 2) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 2) (DPNPase 2) (Inositol polyphosphate 1-phosphatase 2) (IPPase 2) (Inositol-1,4-bisphosphate 1-phosphatase 2) (EC 3.1.3.57),Inositol monophosphatase family protein 3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; inositol-1,4-bisphosphate 1-phosphatase activity [GO:0004441]; metal ion binding [GO:0046872]; phosphatidylinositol phosphorylation [GO:0046854]; sulfur compound metabolic process [GO:0006790],3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; inositol bisphosphate phosphatase activity [GO:0016312]; inositol-1,4-bisphosphate 1-phosphatase activity [GO:0004441]; metal ion binding [GO:0046872]; phosphatidylinositol phosphorylation [GO:0046854]; sulfur compound metabolic process [GO:0006790],3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; phosphatidylinositol phosphorylation [GO:0046854]; sulfur compound metabolic process [GO:0006790] TISSUE SPECIFICITY: Very low expression in roots, leaves, stems, flowers and siliques. locus:2184812;,locus:2160836; AT5G09290,AT5G64000 Inositol monophosphatase family NA NA NA NA NA NA NA ENOG411E9QV QWRF9 F4K4M0,A0A1P8BC48,A0A1P8BG93 QWRF9_ARATH,A0A1P8BC48_ARATH,A0A1P8BG93_ARATH QWRF motif-containing protein 9,QWRF motif protein,QWRF motif protein (DUF566) 56083,25946,28703 QWRF motif-containing protein 9,QWRF motif protein,QWRF motif protein (DUF566) locus:2167756; AT5G43160 Family of unknown function (DUF566) NA NA NA NA NA NA NA ENOG411E9QQ Q6RF49,A0A1P8AZX5,F4JL02 Q6RF49_ARATH,A0A1P8AZX5_ARATH,F4JL02_ARATH Uncharacterized protein 40245,41663,40092 Uncharacterized protein locus:2050725;,locus:2130015; AT2G45940,AT4G16080 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E9QP PIP5K2,PIP5K1 Q8L796,Q56YP2 PI5K2_ARATH,PI5K1_ARATH Phosphatidylinositol 4-phosphate 5-kinase 2 (AtPIP5K2) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 2) (Diphosphoinositide kinase 2) (PtdIns(4)P-5-kinase 2),Phosphatidylinositol 4-phosphate 5-kinase 1 (AtPIP5K1) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 1) (Diphosphoinositide kinase 1) (PtdIns(4)P-5-kinase 1) FUNCTION: Possesses phosphatidylinositol kinase activity in vitro. {ECO:0000269|PubMed:19903693}.,FUNCTION: Catalyzes the synthesis of phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4-bisphosphate. {ECO:0000269|PubMed:11672432}. MISCELLANEOUS: Plants overexpressing PI5K2 exhibit severe dwarfism and are enriched in the plasma membrane of the root meristem. {ECO:0000305|PubMed:19903693}. ARA:AT1G77740-MONOMER;,ARA:AT1G21980-MONOMER; R-ATH-1660499;R-ATH-6811558;R-ATH-8856828; 2.7.1.68; 2.7.1.68 86345,85945 Phosphatidylinositol 4-phosphate 5-kinase 2 (AtPIP5K2) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 2) (Diphosphoinositide kinase 2) (PtdIns(4)P-5-kinase 2),Phosphatidylinositol 4-phosphate 5-kinase 1 (AtPIP5K1) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 1) (Diphosphoinositide kinase 1) (PtdIns(4)P-5-kinase 1) plasma membrane [GO:0005886]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524]; developmental process involved in reproduction [GO:0003006]; growth [GO:0040007]; lateral root formation [GO:0010311]; positive gravitropism [GO:0009958],plasma membrane [GO:0005886]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; actin filament binding [GO:0051015]; actin monomer binding [GO:0003785]; ATP binding [GO:0005524]; phosphatidylinositol phosphate kinase activity [GO:0016307] TISSUE SPECIFICITY: Expressed in the whole plant, preferentially in roots. Strongly expressed in meristematic tissues, namely procambial cell layers. {ECO:0000269|PubMed:11489170, ECO:0000269|PubMed:9753781}. locus:2203211;,locus:2201108; AT1G77740,AT1G21980 PIPKc Phosphatidylinositol 4-phosphate 5-kinase (EC 2.7.1.68),Os03g0705300 protein (Fragment) Q8LN60,A0A0P0W200 Q8LN60_ORYSJ,A0A0P0W200_ORYSJ Os03g49800 LOC_Os03g49800 Os03g0705300 OsJ_12275 OSNPB_030705300,Os03g0705300 OSNPB_030705300 ENOG411E9QS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/calcium exchanger protein NA NA NA NA NA NA NA ENOG411E9QR XI-J,XIJ Q9M2K0,A0A1I9LTB4,A0A1I9LTB3 MYO16_ARATH,A0A1I9LTB4_ARATH,A0A1I9LTB3_ARATH Myosin-16 (AtMYA3) (AtMYOS3) (Myosin XI J) (AtXIJ),P-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250}. 141413,134238,139742 Myosin-16 (AtMYA3) (AtMYOS3) (Myosin XI J) (AtXIJ),P-loop containing nucleoside triphosphate hydrolases superfamily protein myosin complex [GO:0016459]; vacuole [GO:0005773]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774] TISSUE SPECIFICITY: Expressed in flowers and leaves. {ECO:0000269|PubMed:7811972}. locus:2085340; AT3G58160 Myosin N-terminal SH3-like domain NA NA NA NA NA NA NA ENOG411E9QY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase NA NA NA NA NA NA NA ENOG411E9QX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E9QZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EFBK ASK19,ASK17,ASK15,ASK14,ASK18,ASK16 O81058,Q9SL65,Q1PEL7,O81057,Q9SY65,O81055 ASK19_ARATH,ASK17_ARATH,ASK15_ARATH,ASK14_ARATH,ASK18_ARATH,ASK16_ARATH SKP1-like protein 19 (AtSK19),SKP1-like protein 17 (AtSK17) (Protein MEIDOS),SKP1-like protein 15 (AtSK15),SKP1-like protein 14 (AtSK14),SKP1-like protein 18 (AtSK18),SKP1-like protein 16 (AtSK16) FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). {ECO:0000250}.,FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Probably implicated in incompatibility response after hybridization. {ECO:0000250, ECO:0000269|PubMed:16824920}.,FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12970487}. MISCELLANEOUS: This protein was called 'Meidos' in memory of one of the murdered sons of the mythological 'Medea', as MEIDOS is repressed by MEDEA. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664;R-ATH-983168; 22715,17286,20254,17102,18163,19399 SKP1-like protein 19 (AtSK19),SKP1-like protein 17 (AtSK17) (Protein MEIDOS),SKP1-like protein 15 (AtSK15),SKP1-like protein 14 (AtSK14),SKP1-like protein 18 (AtSK18),SKP1-like protein 16 (AtSK16) nucleus [GO:0005634]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511] DEVELOPMENTAL STAGE: Expressed at low levels in the inflorescence meristem (IM) and young flowers. Later confined to sepals, petals and stamen filaments. Detectable in the valve and seed coat. {ECO:0000269|PubMed:12970487}.,DEVELOPMENTAL STAGE: Highly expressed in the pith and vascular bundle in the stem. Found in the pedicel of young buds. Also expressed in the inner epidermis of carpels and pedicels in mature flowers. In siliques, mostly expressed in inner epidermis of the valve. {ECO:0000269|PubMed:12970487}.,DEVELOPMENTAL STAGE: Expressed in male meiocytes and tetrads. {ECO:0000269|PubMed:12970487}.,DEVELOPMENTAL STAGE: Highly expressed in the pith and vascular bundle in the stem. Found in the pedicel of young buds. In siliques, mostly expressed in inner epidermis of the valve. {ECO:0000269|PubMed:12970487}. TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:12970487}.,TISSUE SPECIFICITY: Mainly detected in the siliques. {ECO:0000269|PubMed:12970487}.,TISSUE SPECIFICITY: Expressed at low levels in seedlings and leaves. {ECO:0000269|PubMed:12970487}.,TISSUE SPECIFICITY: Restricted to inflorescences, pollen and leaves. {ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14749489}.,TISSUE SPECIFICITY: Expressed in young seedlings, roots, leaves, floral stems, inflorescences, pollen, and siliques. {ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14749489}. locus:2056966;,locus:2061709;,locus:2102370;,locus:2056956;,locus:2056931; AT2G03160,AT2G20160,AT3G25650,AT2G03170,AT1G10230,AT2G03190 Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1 RBX1 and a F- box protein it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F- box protein. In the SCF complex it serves as an adapter that links the F-box protein to CUL1 (By similarity) NA NA NA NA NA NA NA ENOG411EGMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EGMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAAX protease self-immunity NA NA NA NA NA NA NA ENOG411EFHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411EFHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EFHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: extended synaptotagmin-like protein NA NA NA NA NA NA NA ENOG411EFHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0386700 protein Q60E69 Q60E69_ORYSJ Os05g0386700 Os05g0386700 OSJNBa0073E05.7 OSNPB_050386700 ENOG411EFHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain NA NA NA NA NA NA NA ENOG411EFHE O80519 O80519_ARATH F14J9.2 protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) 21353 F14J9.2 protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) pectinesterase inhibitor activity [GO:0046910] locus:2012360; AT1G09360 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EFHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411EFHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EFHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 Os09g0364100 protein (Fragment) A0A0N7KQN6 A0A0N7KQN6_ORYSJ Os09g0364100 OSNPB_090364100 ENOG411EFHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HALZ NA NA NA NA NA NA NA ENOG411EFHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Autophagy protein Apg5 NA NA NA NA NA NA NA ENOG411EFHR NIMIN-2 Q9LUA3 NIMI2_ARATH Protein NIM1-INTERACTING 2 (Protein NIMIN-2) 13508 Protein NIM1-INTERACTING 2 (Protein NIMIN-2) nucleus [GO:0005634]; regulation of systemic acquired resistance [GO:0010112] locus:504955745; AT3G25882 Nim1-interacting 2 NA NA NA NA NA NA NA ENOG411EFHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 23 (OsMADS23) Q6VAM4 MAD23_ORYSJ MADS23 Os08g0431900 LOC_Os08g33488 OJ1111_B08.22 FUNCTION: Probable transcription factor. ENOG411EFHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Guanylate-binding protein N-terminal domain NA NA NA NA NA NA NA ENOG411EFHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MAPEG family NA NA NA NA NA NA NA ENOG411EFH1 B3H5L1 LOR9_ARATH Protein LURP-one-related 9 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 22546 Protein LURP-one-related 9 locus:4515103053; AT3G10986 Pfam:DUF567 NA NA NA NA NA NA NA ENOG411EFH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kinesin-associated protein (KAP) NA NA NA NA NA NA NA ENOG411EFH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411EFH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO NA NA NA NA NA NA NA ENOG411EFH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os03g0627900 protein (Fragment),Os06g0350700 protein,Os06g0262501 protein,Os12g0499874 protein,Os07g0428216 protein,Os05g0296266 protein A0A0P0W0C5,A0A0P0WWP0,A0A0P0WV52,A0A0P0YAF4,A0A0P0X539,A0A0P0WKD9 A0A0P0W0C5_ORYSJ,A0A0P0WWP0_ORYSJ,A0A0P0WV52_ORYSJ,A0A0P0YAF4_ORYSJ,A0A0P0X539_ORYSJ,A0A0P0WKD9_ORYSJ Os03g0627900 OSNPB_030627900,Os06g0350700 OSNPB_060350700,Os06g0262501 OSNPB_060262501,Os12g0499874 OSNPB_120499874,Os07g0428216 OSNPB_070428216,Os05g0296266 OSNPB_050296266 ENOG411EFH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFH6 Q45GL6 Q45GL6_ARATH Uncharacterized protein 24554 Uncharacterized protein locus:504955768; AT3G20155 NA NA NA NA NA NA NA NA ENOG411EG5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EFBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EG5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EEY9 F18O21_180 Q9LYM0,A0A1I9LP66 Q9LYM0_ARATH,A0A1I9LP66_ARATH At3g56220 (Transcription regulator) (Uncharacterized protein At3g56220) (Uncharacterized protein F18O21_180),Transcription regulator 17307,15659 At3g56220 (Transcription regulator) (Uncharacterized protein At3g56220) (Uncharacterized protein F18O21_180),Transcription regulator protein dimerization activity [GO:0046983] locus:2078411; AT3G56220 transcription regulator NA NA NA NA NA NA NA ENOG411EEDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like NA NA NA NA NA NA NA ENOG411EG5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EG5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EG5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Os01g0899100 protein,Os07g0108100 protein A0A0P0VBV2,A0A0N7KMT7 A0A0P0VBV2_ORYSJ,A0A0N7KMT7_ORYSJ Os01g0899100 OSNPB_010899100,Os07g0108100 OSNPB_070108100 ENOG411E42F Q9ZW37 Q9ZW37_ARATH At2g29590 (Expressed protein) (Thioesterase superfamily protein) (Uncharacterized protein At2g29590) 17368 At2g29590 (Expressed protein) (Thioesterase superfamily protein) (Uncharacterized protein At2g29590) cytoplasm [GO:0005737]; peroxisome [GO:0005777]; acyl-CoA hydrolase activity [GO:0047617] locus:2043002; AT2G29590 thioesterase Os02g0521700 protein (cDNA clone:001-110-D11, full insert sequence) (cDNA clone:J013158I20, full insert sequence) Q6H558 Q6H558_ORYSJ Os02g0521700 Os02g0521700 OsJ_06944 OSJNBa0047A17.12-1 OSNPB_020521700 ENOG411E42A PRIN2 Q9XIK0 PRIN2_ARATH Protein PLASTID REDOX INSENSITIVE 2 DISRUPTION PHENOTYPE: Misregulation of photosynthesis-associated nuclear gene expression in response to excess light, and inhibition of photosynthetic electron transport (PubMed:22211401, PubMed:25161659). Defects in embryo development (PubMed:25161659). Dwarf pale plants (PubMed:22211401, PubMed:25161659). The csp41b-2 prin2-2 double mutant is embryo lethal (PubMed:25161659). {ECO:0000269|PubMed:22211401, ECO:0000269|PubMed:25161659}. FUNCTION: Involved in redox-mediated retrograde signaling to synchronize the expression of photosynthetic genes from both the nuclear and plastidic genomes, especially in excess light conditions (PubMed:22211401). Required for full expression of genes transcribed by the plastid-encoded RNA polymerase (PEP) (PubMed:22211401, PubMed:25161659). Essential for embryo development (PubMed:25161659). {ECO:0000269|PubMed:22211401, ECO:0000269|PubMed:25161659}. 20252 Protein PLASTID REDOX INSENSITIVE 2 chloroplast nucleoid [GO:0042644]; plastid nucleoid [GO:0042646]; plastid-encoded plastid RNA polymerase complex [GO:0000427]; DNA binding [GO:0003677]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355]; response to light intensity [GO:0009642]; transcription, DNA-templated [GO:0006351] locus:505006116; AT1G10522 NA Protein PLASTID REDOX INSENSITIVE 2, chloroplastic Q6H612 PRIN2_ORYSJ PRIN2 Os09g0382400 LOC_Os09g21460 OsJ_29199 P0505H05.24 FUNCTION: Required for the activity of the plastid-encoded RNA polymerase (PEP) and full expression of genes transcribed by PEP. {ECO:0000250|UniProtKB:B6UFC7}. ENOG411E424 S-RBP11 Q9FFZ6 RBP11_ARATH Small RNA-binding protein 11, chloroplastic DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased sensitivity to salt stress. {ECO:0000269|PubMed:24413693}. FUNCTION: Probable RNA-binding protein that may be involved in salt and oxidative stress tolerance. {ECO:0000269|PubMed:24413693}. 15422 Small RNA-binding protein 11, chloroplastic chloroplast [GO:0009507]; RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves, stems and flowers. {ECO:0000269|PubMed:24413693}. locus:2160752; AT5G06210 RNA-binding protein NA NA NA NA NA NA NA ENOG411E427 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0795200 protein (cDNA clone:001-026-C08, full insert sequence) Q6K8Z2 Q6K8Z2_ORYSJ Os02g0795200 Os02g0795200 OJ1695_H09.10 OsJ_08708 OSNPB_020795200 ENOG411E423 MHK10.11 Q9SLC0 Q9SLC0_ARATH Expressed protein (Kinase C substrate, heavy chain-like protein) (Uncharacterized protein At2g42390) 23749 Expressed protein (Kinase C substrate, heavy chain-like protein) (Uncharacterized protein At2g42390) integral component of membrane [GO:0016021]; kinase activity [GO:0016301]; N-glycan processing [GO:0006491] locus:2053771; AT2G42390 Glucosidase 2 subunit Os01g0752400 protein A0A0P0V8A3 A0A0P0V8A3_ORYSJ Os01g0752400 OSNPB_010752400 ENOG411E429 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Expressed protein (Os11g0156300 protein) (cDNA clone:002-124-D02, full insert sequence) Q53ND9 Q53ND9_ORYSJ LOC_Os11g05770 Os11g0156300 OSNPB_110156300 ENOG411EG59 Q9LTP7 Q9LTP7_ARATH At3g20450 (B-cell receptor-associated protein 31-like protein) (Uncharacterized protein At3g20450) 15196 At3g20450 (B-cell receptor-associated protein 31-like protein) (Uncharacterized protein At3g20450) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; protein localization to endoplasmic reticulum exit site [GO:0070973] locus:2092364; AT3G20450 Inherit from KOG: b-cell receptor-associated protein NA NA NA NA NA NA NA ENOG411EG51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidohydrolase family NA NA NA NA NA NA NA ENOG411EIDN Q9XIL6 Q9XIL6_ARATH At2g15830 (Uncharacterized protein At2g15830) 7312 At2g15830 (Uncharacterized protein At2g15830) locus:2044636; AT2G15830 NA NA NA NA NA NA NA NA ENOG411EIDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DV39 LACS2 Q9XIA9,A0A1P8ARJ4 LACS2_ARATH,A0A1P8ARJ4_ARATH Long chain acyl-CoA synthetase 2 (EC 6.2.1.3) (Protein Botrytis resistant 1) (Protein LATERAL ROOT DEVELOPMENT 2),Long-chain acyl-CoA synthetase 2 DISRUPTION PHENOTYPE: Dwarf phenotype with smaller, wrinkled leaves and overall reduced vigor. Higher water loss rate and susceptibility to drought stress. Defective in the cuticular membrane. Strong resistance to virulent Botrytis cinerea and enhanced susceptibility to avirulent Pseudomonas syringae. {ECO:0000269|PubMed:14973169, ECO:0000269|PubMed:17396154, ECO:0000269|PubMed:17434992, ECO:0000269|PubMed:20237894}. The lacs1-1 lacs2-3 double mutants had a synergistic phenotype compared to either of the single mutants with drastically reduced stem wax and cutin contents increased cuticle permeability and severe male sterile in low humidity.,Mutant leaves were small and irregular in shape compared with the wild type. Both surfaces of mutant leaves differed from the wild type. Adaxial surfaces of the wild type showed the characteristic jigsaw puzzle shape of pavement cells. In the mutant the cells contained fewer larger lobes. Epidermal cells on the abaxial surface of mutants were collapsed. This collapsed appearance was consistently seen in views of the abaxial leaf surface of mutant plants but was never observed on the abaxial surface of wild-type leaves or on the adaxial surfaces of either the wild-type or mutant plants.,Mutant rosettes were slower to flower than wildtype plants (34.1 d versus 30.2 d under a 16-h photoperiod). Mutant plants produced smaller bolts but flower morphology and fertility were normal and siliques were similar in size to those on wild-type plants. The smaller bolts of the mutant yielded only 62 mg seed/plant compared with 177 mg seed/plant from wild-type controls. Harvested mutant seeds appeared smaller and darker than seeds from wild-type plants that had been grown alongside the mutants. Examination by light microscopy revealed that 50% of mutant seeds contained green embryos that could be distinguished through the testa. When the green and normal brown seeds from a mutant plant were germinated separately the green seeds showed 79% germination compared with 100% germination for the brown seeds.,Only 80.0% of mutant seedlings emerged. At 6 d a percentage of the emerged mutant seedlings would not grow and develop into viable plants. These seedlings had white cotyledons and they eventually died. At 19 d 91.0% of the wild-type seeds that germinated had produced viable rosettes with four to five pairs of true leaves. For the mutants only 72.2% of seeds that had germinated (58% of those sown) produced rosettes. At this stage the mutant had only two to three pairs of true leaves.,Reduced-growth phenotype.,The cutin layer on the adaxial surface of mutant leaves was not significantly different in cross-sectional thickness from that of control wild-type leaves. However the abaxial cutin layer on mutant leaves was substantially thinner than the wild type.,The rate of chlorophyll leaching from mutant plants was threefold higher than the rate from wild-type controls.,Increased cuticle permeability compared with WT.,Strongly resistant to infection with Botrytis cinerea strain: infection sites on mutant leaves remained usually symptom free in contrast to those on Col leaves.,A number of ester-bound monomers were reduced in the mutant.,Increased resistance to Botrytis infection: the visual phenotypes of the leaves 3 days after inoculation show that the lesions larger than the original infection site represent only 5% of lesions compared to 75% in WT plants.,Similar phenotype to that described for lacs2-2.,The distinct osmium-dense cuticular membrane representing insoluble lipid-derived polymers such as cutin visible at the epidermal outer extracellular matrix of WT plants could not be seen at the leaf epidermis of the mutant. The remaining outer epidermal extracellular matrix sometimes had a distinct laminated structure.,The mutant showed severe damage at a lower concentration of BASTA compared with WT Col-0 plants.,The rate of water loss from the mutant is significantly higher than that of Col-0 plants.,The total amount of omega-hydroxylated fatty acids and their derivatives was reduced 4- to 5-fold in the mutant compared with Col-0. The impact of mutation on the amount of dicarboxylic acids characteristic of Arabidopsis cutin was particularly strong and the amount was reduced to 15-20% of WT amount. Dwarf; Few, small, wrinkled leaves-J. Browse-2004 FUNCTION: Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. {ECO:0000269|PubMed:14973169, ECO:0000269|PubMed:15960613, ECO:0000269|PubMed:17396154, ECO:0000269|PubMed:17434992, ECO:0000269|PubMed:18952782}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT1G49430-MONOMER;MetaCyc:AT1G49430-MONOMER; 6.2.1.3 74389,57635 Long chain acyl-CoA synthetase 2 (EC 6.2.1.3) (Protein Botrytis resistant 1) (Protein LATERAL ROOT DEVELOPMENT 2),Long-chain acyl-CoA synthetase 2 endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; very long-chain fatty acid-CoA ligase activity [GO:0031957]; cutin biosynthetic process [GO:0010143]; defense response to fungus [GO:0050832]; fatty acid metabolic process [GO:0006631]; lateral root formation [GO:0010311],catalytic activity [GO:0003824]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed along the entire length of the stem, but expression was not entirely epidermal specific, with some expression found in internal cell layers as well. Was expressed in leave epidermal cells, flowers (sepals, petals, stamens, filaments and carpel), siliques and developing seeds. In roots, expression was detected in an internal cell layer, probably the endodermal layer. {ECO:0000269|PubMed:14973169, ECO:0000269|PubMed:19392700}. locus:2010177; AT1G49430 acyl-CoA synthetase AMP-binding enzyme family protein, expressed (Os11g0558300 protein) (cDNA clone:002-147-B09, full insert sequence) Q2R2L5 Q2R2L5_ORYSJ LOC_Os11g35400 Os11g0558300 OsJ_34263 OSNPB_110558300 ENOG411DV38 CHR5 F4IV99 CHR5_ARATH Protein CHROMATIN REMODELING 5 (AtCHR5) (EC 3.6.4.-) FUNCTION: DNA-binding helicase that specifically binds to the promoter of target genes, leading to chromatin remodeling, possibly by promoting deposition of histone H3.3 (By similarity). Probable chromatin remodeling factor. {ECO:0000250|UniProtKB:E9PZM4, ECO:0000303|PubMed:16547115}. 3.6.4.- 197270 Protein CHROMATIN REMODELING 5 (AtCHR5) (EC 3.6.4.-) nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; covalent chromatin modification [GO:0016569] locus:2041644; AT2G13370 chromodomain-helicase-DNA-binding protein Os07g0660200 protein (Fragment) Q0D3X9,A0A0P0XA01 Q0D3X9_ORYSJ,A0A0P0XA01_ORYSJ Os07g0660200 Os07g0660200 OSNPB_070660200,Os07g0660200 OSNPB_070660200 ENOG411DV33 F20M13.200 Q93YN6 Q93YN6_ARATH Plasma-membrane choline transporter family protein (Uncharacterized protein At4g38640) (Uncharacterized protein F20M13.200) 62146 Plasma-membrane choline transporter family protein (Uncharacterized protein At4g38640) (Uncharacterized protein F20M13.200) integral component of membrane [GO:0016021] locus:2121274; AT4G38640 choline transporter-like protein NA NA NA NA NA NA NA ENOG411DV32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARM NA NA NA NA NA NA NA ENOG411DV31 T8M16_80,AT2G41150.1 Q9LET2,F4IJX5,F4IJX6 Q9LET2_ARATH,F4IJX5_ARATH,F4IJX6_ARATH AT3g56750/T8M16_80 (Plant/protein) (Uncharacterized protein At3g56750) (Uncharacterized protein At3g56750; T8M16_80) (Uncharacterized protein T8M16_80),Plant/protein 46399,46343,29252 AT3g56750/T8M16_80 (Plant/protein) (Uncharacterized protein At3g56750) (Uncharacterized protein At3g56750; T8M16_80) (Uncharacterized protein T8M16_80),Plant/protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2103640;,locus:2063192; AT3G56750,AT2G41150 NA Expressed protein (Os03g0366700 protein) (cDNA, clone: J065043N22, full insert sequence),Os07g0641000 protein (Fragment) Q10KX9,A0A0P0X9D6 Q10KX9_ORYSJ,A0A0P0X9D6_ORYSJ Os03g0366700 LOC_Os03g25110 OSNPB_030366700,Os07g0641000 OSNPB_070641000 ENOG411DV30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 5-1,Os05g0197200 protein Q688L5,A0A0P0WJ89 GL51_ORYSJ,A0A0P0WJ89_ORYSJ Os05g0197200 LOC_Os05g10830 P0617H07.14 P0636E04.5,Os05g0197200 OSNPB_050197200 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DV37 PAP4,PAP5 Q9LU85,Q6DBN2,A0A1I9LP70 PAP4_ARATH,PAP5_ARATH,A0A1I9LP70_ARATH Probable plastid-lipid-associated protein 4, chloroplastic (Fibrillin-3a) (Plastoglobulin 25) (AtPGL25),Probable plastid-lipid-associated protein 5, chloroplastic (Fibrillin-3b),Plastid-lipid associated protein PAP / fibrillin family protein 27163,26249,29717 Probable plastid-lipid-associated protein 4, chloroplastic (Fibrillin-3a) (Plastoglobulin 25) (AtPGL25),Probable plastid-lipid-associated protein 5, chloroplastic (Fibrillin-3b),Plastid-lipid associated protein PAP / fibrillin family protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; plastoglobule [GO:0010287],chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535] locus:2092150;,locus:2092165; AT3G26070,AT3G26080 plastid-lipid-associated protein 4 Os03g0704100 protein (Fragment) A0A0P0W2S8 A0A0P0W2S8_ORYSJ Os03g0704100 OSNPB_030704100 ENOG411DV35 AKT1,KT1 Q38998,A0A1P8B0E9 AKT1_ARATH,A0A1P8B0E9_ARATH Potassium channel AKT1,K+ transporter 1 Reduced potassium uptake-M. Sussman-1998 FUNCTION: Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Positively regulated by phosphorylation by CIPK23. Negatively regulated by a kinase-independent regulatory mechanism involving a competing direct binding of CBL10. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins (PubMed:12678562, PubMed:16814720, PubMed:16895985, PubMed:17898163, PubMed:9572739). Is essential with POT5/HAK5 for high-affinity potassium uptake in roots during seedling establishment and postgermination growth under low potassium conditions (PubMed:20413648). {ECO:0000269|PubMed:12678562, ECO:0000269|PubMed:16814720, ECO:0000269|PubMed:16895985, ECO:0000269|PubMed:17898163, ECO:0000269|PubMed:20413648, ECO:0000269|PubMed:9572739}. ARA:AT2G26550-MONOMER;MetaCyc:MONOMER-14552; 96990,84996 Potassium channel AKT1,K+ transporter 1 integral component of plasma membrane [GO:0005887]; identical protein binding [GO:0042802]; inward rectifier potassium channel activity [GO:0005242]; potassium ion import [GO:0010107]; potassium ion transport [GO:0006813]; regulation of membrane potential [GO:0042391]; regulation of stomatal closure [GO:0090333]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; root hair elongation [GO:0048767],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] TISSUE SPECIFICITY: Preferentially expressed in the peripheral cell layers of root mature including root cortex and root hairs. Detected also, at a lower level, in the mesophyll of the leaves and at restricted sites corresponding to hydathodes and guard cells. {ECO:0000269|PubMed:8555458, ECO:0000269|PubMed:8820606}. locus:2043839; AT2G26650 Potassium channel Potassium channel AKT1 (OsAKT1) Q0JKV1 AKT1_ORYSJ AKT1 Os01g0648000 LOC_Os01g45990 FUNCTION: Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots. {ECO:0000269|PubMed:15599592}. ENOG411DV34 UMK3 O04905 KCY3_ARATH UMP-CMP kinase 3 (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK) FUNCTION: Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. Does not act on dCMP and dUMP. ARA:AT5G26667-MONOMER;MetaCyc:AT5G26667-MONOMER; R-ATH-499943; 2.7.4.14; 2.7.4.14 22482 UMP-CMP kinase 3 (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK) apoplast [GO:0048046]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cytidylate kinase activity [GO:0004127]; uridylate kinase activity [GO:0009041]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; pyrimidine nucleotide biosynthetic process [GO:0006221]; pyrimidine ribonucleoside monophosphate metabolic process [GO:0009173] locus:1005716878; AT5G26667 uridylate kinase UMP-CMP kinase 4 (EC 2.7.4.14) (Deoxycytidylate kinase 4) (CK 4) (dCMP kinase 4) (Uridine monophosphate/cytidine monophosphate kinase 4) (UMP/CMP kinase 4) (UMP/CMPK 4),UMP-CMP kinase 3 (EC 2.7.4.14) (Deoxycytidylate kinase 3) (CK 3) (dCMP kinase 3) (UMP/CMP kinase a) (UMP/CMP kinase b) (Uridine monophosphate/cytidine monophosphate kinase 3) (UMP/CMP kinase 3) (UMP/CMPK 3),Os06g0203500 protein (cDNA clone:002-114-C08, full insert sequence) Q6K7H2,Q7XI40,B7EZK2 KCY4_ORYSJ,KCY3_ORYSJ,B7EZK2_ORYSJ Os02g0778400 LOC_Os02g53790 OJ1293_A01.3,URA6 Os07g0624700 LOC_Os07g43170 P0524E08.133,Os06g0203500 OSNPB_060203500 FUNCTION: Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. {ECO:0000255|HAMAP-Rule:MF_03172}. ENOG411DV3Z TRP6,TRP5 Q9M347,Q6R0E3 TRP6_ARATH,TRP5_ARATH Telomere repeat-binding protein 6 (Protein TRF-LIKE 4),Telomere repeat-binding protein 5 (Protein TRF-LIKE 2) DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy. {ECO:0000269|PubMed:15364931}. FUNCTION: Binds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.,FUNCTION: Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. 45033,70186 Telomere repeat-binding protein 6 (Protein TRF-LIKE 4),Telomere repeat-binding protein 5 (Protein TRF-LIKE 2) nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; regulation of transcription, DNA-templated [GO:0006355]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. locus:2025007; AT3G53790,AT1G07540 Telomere repeat-binding protein Initiator-binding protein, putative, expressed (Os03g0274300 protein) Q10NC6 Q10NC6_ORYSJ Os03g0274300 LOC_Os03g16700 OSNPB_030274300 ENOG411DV3Y NRPD2,NRPD2b,NRPD2B Q9LK40,Q9LV32,A0A1I9LNQ9,A0A1I9LNQ8 NRPD2_ARATH,RPD2B_ARATH,A0A1I9LNQ9_ARATH,A0A1I9LNQ8_ARATH DNA-directed RNA polymerases IV and V subunit 2 (EC 2.7.7.6) (DNA-directed RNA polymerase D subunit 2a) (AtNRPD2a) (Nuclear RNA polymerase D 2a) (Nuclear RNA polymerase E 2) (Protein DEFECTIVE IN MERISTEM SILENCING 2) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2) (RNA polymerase IV subunit 2a) (POL IV 2a),DNA-directed RNA polymerase D subunit 2b (AtNRPD2b) (Nuclear RNA polymerase D 2b) (EC 2.7.7.6) (RNA polymerase IV subunit 2b) (POL IV 2b),DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) DISRUPTION PHENOTYPE: Blocked in the perpetuation of CNN, CG and CNG methylation in repeated endogenous DNA. Reduction of heterochromatin association and methylation into chromocenters, coincident with decondensation and losses in cytosine methylation at pericentromeric major repeats such as 5S gene clusters and AtSN1 retroelements during interphase, independently of siRNA accumulation. Altered cell-to-cell movement of siRNA beyond the vasculature. Reduced 35S promoter homology-dependent transcriptional gene silencing (TGS) in transgenic plants. {ECO:0000269|PubMed:15692015, ECO:0000269|PubMed:15766525, ECO:0000269|PubMed:15924141, ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:16839878, ECO:0000269|PubMed:17526749, ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:19110459, ECO:0000269|PubMed:19825650, ECO:0000269|PubMed:21070421}. Defective in non-CG methylation FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Also required for full erasure of methylation when the RNA trigger is withdrawn. Required for intercellular RNA interference (RNAi) leading to systemic post-transcriptional gene silencing. Involved in the maintenance of post-transcriptional RNA silencing. During interphase, mediates siRNA-independent heterochromatin association and methylation into chromocenters and condensation and cytosine methylation at pericentromeric major repeats. Required for complete maintenance of the 35S promoter homology-dependent TGS in transgenic plants and for the initial establishment of DNA methylation. {ECO:0000269|PubMed:15692015, ECO:0000269|PubMed:15766525, ECO:0000269|PubMed:15924141, ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:16839878, ECO:0000269|PubMed:17360559, ECO:0000269|PubMed:17526749, ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:19110459, ECO:0000269|PubMed:19825650, ECO:0000269|PubMed:21070421, ECO:0000269|PubMed:21150311}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase IVa and IVb which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) silencing of endogenous repeated sequences, including transposable largest subunit. Also required for full erasure of methylation elements. Required for intercellular RNA interference (RNAi) leading to systemic post-transcriptional gene silencing (Probable). {ECO:0000305|PubMed:17360559}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU363031}. 2.7.7.6 132654,126262,102065,100536 DNA-directed RNA polymerases IV and V subunit 2 (EC 2.7.7.6) (DNA-directed RNA polymerase D subunit 2a) (AtNRPD2a) (Nuclear RNA polymerase D 2a) (Nuclear RNA polymerase E 2) (Protein DEFECTIVE IN MERISTEM SILENCING 2) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2) (RNA polymerase IV subunit 2a) (POL IV 2a),DNA-directed RNA polymerase D subunit 2b (AtNRPD2b) (Nuclear RNA polymerase D 2b) (EC 2.7.7.6) (RNA polymerase IV subunit 2b) (POL IV 2b),DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; ribonucleoside binding [GO:0032549]; defense response to fungus [GO:0050832]; DNA methylation [GO:0006306]; gene silencing by RNA [GO:0031047]; posttranscriptional gene silencing by RNA [GO:0035194]; production of siRNA involved in RNA interference [GO:0030422]; regulation of immune response [GO:0050776]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase I promoter [GO:0006360],DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; membrane [GO:0016020]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; ribonucleoside binding [GO:0032549]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase I promoter [GO:0006360],integral component of membrane [GO:0016021]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; ribonucleoside binding [GO:0032549]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in seedlings, flowers and roots, present ubiquitously, except in sperm cells. {ECO:0000269|PubMed:15766525, ECO:0000269|PubMed:18667720}. locus:2095233;,locus:2092682; AT3G23780,AT3G18090 DNA-directed RNA Polymerase Os04g0641000 protein,DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) A0A0P0WFF5,A0A0P0WFD3 A0A0P0WFF5_ORYSJ,A0A0P0WFD3_ORYSJ Os04g0641000 OSNPB_040641000 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU363031}. ENOG411DV3X BRD4 Q6AWX2,A0A1P8AV90 Q6AWX2_ARATH,A0A1P8AV90_ARATH At1g61215 (Bromodomain 4),Bromodomain 4 52707,50769 At1g61215 (Bromodomain 4),Bromodomain 4 locus:1006230673; AT1G61215 BROMO Os07g0565300 protein Q7XIK4 Q7XIK4_ORYSJ OJ1773_H01.106 OJ1112_E08.125 Os07g0565300 OsJ_24767 OSNPB_070565300 ENOG411DV3S Q9SY90 Q9SY90_ARATH DUF1262 family protein (DUF1262) (T25B24.5 protein) 48773 DUF1262 family protein (DUF1262) (T25B24.5 protein) membrane [GO:0016020] locus:2200913; AT1G61600 Protein of unknown function (DUF1262) NA NA NA NA NA NA NA ENOG411DV3R Q9M1D8,Q7X6A5 PP288_ARATH,PPR81_ARATH Pentatricopeptide repeat-containing protein At3g60050,Pentatricopeptide repeat-containing protein At1g55630 54221,54183 Pentatricopeptide repeat-containing protein At3g60050,Pentatricopeptide repeat-containing protein At1g55630 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2101422;,locus:2020527; AT3G60050,AT1G55630 Pentatricopeptide repeat-containing protein Os10g0506000 protein (Pentatricopeptide, putative) Q7G2B3 Q7G2B3_ORYSJ Os10g0506000 LOC_Os10g36190 Os10g0506000 OsJ_32092 OSNPB_100506000 ENOG411DV3Q CIPK10,CIPK2 Q9C562,Q9LYQ8 CIPKA_ARATH,CIPK2_ARATH CBL-interacting serine/threonine-protein kinase 10 (EC 2.7.11.1) (SNF1-related kinase 3.8) (SOS2-like protein kinase PKS2) (SOS3-interacting protein 1),CBL-interacting serine/threonine-protein kinase 2 (EC 2.7.11.1) (SNF1-related kinase 3.2) (SOS2-like protein kinase PKS16) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 54589,51869 CBL-interacting serine/threonine-protein kinase 10 (EC 2.7.11.1) (SNF1-related kinase 3.8) (SOS2-like protein kinase PKS2) (SOS3-interacting protein 1),CBL-interacting serine/threonine-protein kinase 2 (EC 2.7.11.1) (SNF1-related kinase 3.2) (SOS2-like protein kinase PKS16) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] TISSUE SPECIFICITY: Mostly expressed in roots. {ECO:0000269|PubMed:11402167}. locus:2161273;,locus:2169444; AT5G58380,AT5G07070 CBL-interacting protein kinase CBL-interacting protein kinase 20 (EC 2.7.11.1) (OsCIPK20),CBL-interacting protein kinase 2 (EC 2.7.11.1) (OsCIPK02),CBL-interacting protein kinase 11 (EC 2.7.11.1) (OsCIPK11),CBL-interacting protein kinase 18 (EC 2.7.11.1) (OsCIPK18),Non-specific serine/threonine protein kinase (EC 2.7.11.1) (Fragment),Os05g0476466 protein Q60EY8,Q7X996,Q0JI49,Q5W736,A0A0P0V9U6,A0A0P0XAL2,A0A0N7KP23,A0A0P0WL51,A0A0N7KKY8 CIPKK_ORYSJ,CIPK2_ORYSJ,CIPKB_ORYSJ,CIPKI_ORYSJ,A0A0P0V9U6_ORYSJ,A0A0P0XAL2_ORYSJ,A0A0N7KP23_ORYSJ,A0A0P0WL51_ORYSJ,A0A0N7KKY8_ORYSJ CIPK20 Os05g0208100 LOC_Os05g11790 OJ1430_B02.8 OsJ_016739 OsJ_17512,CIPK2 Os07g0678600 LOC_Os07g48100 OJ1409_C08.14-1 OJ1409_C08.14-2 OsJ_024573,CIPK11 Os01g0824600 LOC_Os01g60910 P0031D02.33-1,CIPK18 Os05g0332300 LOC_Os05g26820 OJ1005_D04.11 OJ1675_H07.18,Os01g0824600 OSNPB_010824600,Os07g0678600 OSNPB_070678600,Os05g0332300 OSNPB_050332300,Os05g0476466 OSNPB_050476466 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DV3W ENO1,ENO2,ENO3,LOS2 Q9C9C4,P25696,Q9ZW34,A0A1P8B1N1 ENO1_ARATH,ENO2_ARATH,ENO3_ARATH,A0A1P8B1N1_ARATH Enolase 1, chloroplastic (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase 1) (2-phosphoglycerate dehydratase 1),Bifunctional enolase 2/transcriptional activator (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase 2) (2-phosphoglycerate dehydratase 2) (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1),Cytosolic enolase 3 (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase 3) (2-phosphoglycerate dehydratase 3),Enolase DISRUPTION PHENOTYPE: Distorted trichomes and reduced numbers of root hairs. {ECO:0000269|PubMed:19223001}. Trichomes are less turgescent and are distorted with respect to the wild type. Plants also have fewer root hairs with respect to wild type.,Reduced expression of cold-responsive genes increased freezing sensitivity Distorted trichomes; Decreased root hair density-R. Hausler-2009,Sensitive to freezing-J. Zhu -2002 FUNCTION: Multifunctional enzyme that acts as an enolase involved in the metabolism and as a positive regulator of cold-responsive gene transcription. Binds to the cis-element the gene promoter of STZ/ZAT10, a zinc finger transcriptional repressor. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:20028841}. PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 4/5. ARA:AT1G74030-MONOMER;,ARA:AT2G36530-MONOMER;MetaCyc:AT2G36530-MONOMER;,ARA:AT2G29560-MONOMER; R-ATH-70171;R-ATH-70263; 4.2.1.11 51474,47719,51600,46517 Enolase 1, chloroplastic (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase 1) (2-phosphoglycerate dehydratase 1),Bifunctional enolase 2/transcriptional activator (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase 2) (2-phosphoglycerate dehydratase 2) (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1),Cytosolic enolase 3 (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase 3) (2-phosphoglycerate dehydratase 3),Enolase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; phosphopyruvate hydratase complex [GO:0000015]; magnesium ion binding [GO:0000287]; phosphopyruvate hydratase activity [GO:0004634]; glycolytic process [GO:0006096]; response to cytokinin [GO:0009735]; trichome morphogenesis [GO:0010090],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrial envelope [GO:0005740]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; phosphopyruvate hydratase complex [GO:0000015]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; DNA binding [GO:0003677]; magnesium ion binding [GO:0000287]; phosphopyruvate hydratase activity [GO:0004634]; glycolytic process [GO:0006096]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; phosphopyruvate hydratase complex [GO:0000015]; magnesium ion binding [GO:0000287]; phosphopyruvate hydratase activity [GO:0004634]; glycolytic process [GO:0006096],phosphopyruvate hydratase complex [GO:0000015]; magnesium ion binding [GO:0000287]; phosphopyruvate hydratase activity [GO:0004634]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Highly expressed in young roots, young siliques, and shoot apex. Lowly expressed in young leaves, stems and cotyledons. {ECO:0000269|PubMed:19223001}. locus:2031476;,locus:2044851;,locus:2043067; AT1G74030,AT2G36530,AT2G29560 enolase (EC 4.2.1.11) Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase) (OSE1),Os06g0136600 protein (Putative enolase),Os03g0266200 protein (Fragment),Os09g0375000 protein (cDNA, clone: J100026K04, full insert sequence),Enolase 2, putative, expressed (Os03g0248600 protein) (cDNA clone:J033025E02, full insert sequence) (cDNA clone:J033048H19, full insert sequence),Os10g0167300 protein,Os06g0136600 protein (Fragment) Q42971,Q5VNT9,Q0DT68,B7FA07,Q10P35,A0A0N7KRH6,A0A0P0WS07 ENO_ORYSJ,Q5VNT9_ORYSJ,Q0DT68_ORYSJ,B7FA07_ORYSJ,Q10P35_ORYSJ,A0A0N7KRH6_ORYSJ,A0A0P0WS07_ORYSJ ENO1 AD709 Os10g0167300 LOC_Os10g08550 OSJNAb0015J03.9,Os06g0136600 OSNPB_060136600 P0001H02.35 P0548D03.20,Os03g0266200 Os03g0266200 OSNPB_030266200,Os09g0375000 OSNPB_090375000,Os03g0248600 LOC_Os03g14450 Os03g0248600 OsJ_10141 OSNPB_030248600,Os10g0167300 OSNPB_100167300,Os06g0136600 OSNPB_060136600 ENOG411DV3V Q6DBE3,A0A1P8AQI2 Q6DBE3_ARATH,A0A1P8AQI2_ARATH At1g53860 (Remorin family protein),Remorin family protein 50549,42979 At1g53860 (Remorin family protein),Remorin family protein locus:2197081; AT1G53860 Remorin C-terminal region Os11g0616300 protein (Remorin, C-terminal region family protein, expressed) Q2R164 Q2R164_ORYSJ LOC_Os11g40210 Os11g0616300 OSNPB_110616300 ENOG411DV3U RH28 Q9ZRZ8 RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 (EC 3.6.4.13) 3.6.4.13 89355 DEAD-box ATP-dependent RNA helicase 28 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2130918; AT4G16630 ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 28 (EC 3.6.4.13) Q0INC5 RH28_ORYSJ Os12g0481100 LOC_Os12g29660 OsJ_36091 ENOG411DV3T Q9FJY5 Q9FJY5_ARATH U3 small nucleolar ribonucleoprotein protein MPP10 FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA. {ECO:0000256|PIRNR:PIRNR017300}. R-ATH-6791226; 59745 U3 small nucleolar ribonucleoprotein protein MPP10 cytosol [GO:0005829]; Mpp10 complex [GO:0034457]; nucleolus [GO:0005730]; nucleus [GO:0005634]; small nucleolar ribonucleoprotein complex [GO:0005732]; small-subunit processome [GO:0032040]; viral nucleocapsid [GO:0019013]; maturation of SSU-rRNA [GO:0030490] locus:2154885; AT5G66540 Mpp10 protein U3 small nucleolar ribonucleoprotein protein MPP10 B9G9A5,Q2QY33 B9G9A5_ORYSJ,Q2QY33_ORYSJ Os11g0137100 OsJ_32879 OSNPB_110137100,LOC_Os12g04010 Os12g0133900 OSNPB_120133900 FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA. {ECO:0000256|PIRNR:PIRNR017300}. ENOG411DV3K Q9STF9,A0A1I9LSM9 PP266_ARATH,A0A1I9LSM9_ARATH Pentatricopeptide repeat-containing protein At3g46870,Pentatricopeptide repeat (PPR) superfamily protein FUNCTION: Binds weakly to specific single strand RNA (ssRNA). {ECO:0000269|PubMed:24047899}. 30133,31395 Pentatricopeptide repeat-containing protein At3g46870,Pentatricopeptide repeat (PPR) superfamily protein chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2102832; AT3G46870 Pentatricopeptide repeat-containing protein Os07g0549200 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:006-206-H01, full insert sequence) Q84ZC4 Q84ZC4_ORYSJ P0534A03.122 Os07g0549200 OSNPB_070549200 ENOG411DV3J SBI1 Q8VY08,F4HVW3 Q8VY08_ARATH,F4HVW3_ARATH Leucine carboxyl methyltransferase (Uncharacterized protein At1g02100),Leucine carboxyl methyltransferase FUNCTION: Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A (PP2A) catalytic subunits to form alpha-leucine ester residues (Probable) (PubMed:21558554). Involved in brassinosteroid (BR) signaling. Plays a negative role in BR signaling pathway. Functions as a positive regulator of BRI1 receptor-kinase degradation. Methylates PP2A, thus facilitating its association with activated BRI1. This leads to receptor dephosphorylation and degradation, and thus to the termination of BR signaling. May act upstream of ASK7/BIN2 (PubMed:21558554). Involved in methylation of PP2A during environemental stress responses (PubMed:28741704). {ECO:0000269|PubMed:21558554, ECO:0000269|PubMed:28741704, ECO:0000305|PubMed:28741704}. R-ATH-69273; 37550,34876 Leucine carboxyl methyltransferase (Uncharacterized protein At1g02100),Leucine carboxyl methyltransferase cytosol [GO:0005829]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],methyltransferase activity [GO:0008168] locus:2205619; AT1G02100 leucine carboxyl methyltransferase Leucine carboxyl methyltransferase family protein-like (Os06g0140100 protein) (cDNA clone:001-114-E05, full insert sequence) Q5VPE9 Q5VPE9_ORYSJ Os06g0140100 OsJ_20064 OSJNBa0041F13.37 OSNPB_060140100 ENOG411DV3I FUC1 Q8GW72 FUCO1_ARATH Alpha-L-fucosidase 1 (EC 3.2.1.51) (Alpha-1,3/4-fucosidase) (AtFUC1) (Alpha-L-fucoside fucohydrolase) FUNCTION: Hydrolyzes both 3- and 4-linked fucoses in Lewis determinants. Not active on neither 2-linked fucose nor on fucose in alpha-1,3-linkage to the innermost GlcNAc. {ECO:0000269|PubMed:16516937}. ARA:AT2G28100-MONOMER;MetaCyc:AT2G28100-MONOMER; 3.2.1.51 57186 Alpha-L-fucosidase 1 (EC 3.2.1.51) (Alpha-1,3/4-fucosidase) (AtFUC1) (Alpha-L-fucoside fucohydrolase) apoplast [GO:0048046]; vacuole [GO:0005773]; alpha-L-fucosidase activity [GO:0004560]; carbohydrate metabolic process [GO:0005975]; glycoprotein catabolic process [GO:0006516] locus:2046173; AT2G28100 Alpha-l-fucosidase Putative alpha-L-fucosidase 1 (EC 3.2.1.51) (Alpha-L-fucoside fucohydrolase),Os09g0520800 protein,Os04g0560400 protein (Fragment) Q7XUR3,Q650T8,A0A0P0WDD2 FUCO1_ORYSJ,Q650T8_ORYSJ,A0A0P0WDD2_ORYSJ Os04g0560400 LOC_Os04g47280 OSJNBa0084K11.7,Os09g0520800 Os09g0520800 OSNPB_090520800 P0669G04.14,Os04g0560400 OSNPB_040560400 FUNCTION: Alpha-L-fucosidase is responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Active only against 2'-fucosyl-lactitol when heterologously expressed. ENOG411DV3H Q93XX3 Q93XX3_ARATH Radical SAM superfamily protein (Uncharacterized protein At1g60230) (Uncharacterized protein At1g60230; T13D8.12) ARA:GQT-467-MONOMER; 50760 Radical SAM superfamily protein (Uncharacterized protein At1g60230) (Uncharacterized protein At1g60230; T13D8.12) cytoplasm [GO:0005737]; iron-sulfur cluster binding [GO:0051536]; rRNA methyltransferase activity [GO:0008649]; tRNA methyltransferase activity [GO:0008175]; rRNA base methylation [GO:0070475] locus:2195608; AT1G60230 Radical SAM domain-containing protein Os01g0640800 protein Q0JKY3 Q0JKY3_ORYSJ Os01g0640800 Os01g0640800 OsJ_02780 OSNPB_010640800 ENOG411DV3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wall-associated receptor Os10g0162840 protein,Os10g0162844 protein,Os10g0162836 protein (Fragment) A0A0N7KRH1,A0A0P0XSK3,A0A0P0XRU9 A0A0N7KRH1_ORYSJ,A0A0P0XSK3_ORYSJ,A0A0P0XRU9_ORYSJ Os10g0162840 OSNPB_100162840,Os10g0162844 OSNPB_100162844,Os10g0162836 OSNPB_100162836 ENOG411DV3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRRcap NA NA NA NA NA NA NA ENOG411DV3C ARPC2B,arpc2b F4IVU1,A0A1P8AX53,A0A1P8AX59,F4IVU0 ARC2B_ARATH,A0A1P8AX53_ARATH,A0A1P8AX59_ARATH,F4IVU0_ARATH Actin-related protein 2/3 complex subunit 2B (Actin-related protein C2B) (Arp2/3 complex 34 kDa subunit) (p34-ARC),Arp2/3 complex 34 kDa subunit FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament (By similarity). Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development (By similarity). {ECO:0000250}.,FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. {ECO:0000256|RuleBase:RU364015}. R-ATH-2029482;R-ATH-5663213; 43171,35157,35470,42201 Actin-related protein 2/3 complex subunit 2B (Actin-related protein C2B) (Arp2/3 complex 34 kDa subunit) (p34-ARC),Arp2/3 complex 34 kDa subunit Arp2/3 protein complex [GO:0005885]; cell projection [GO:0042995]; cytoplasm [GO:0005737]; actin filament binding [GO:0051015]; structural constituent of cytoskeleton [GO:0005200]; actin filament organization [GO:0007015]; actin filament polymerization [GO:0030041]; Arp2/3 complex-mediated actin nucleation [GO:0034314],Arp2/3 protein complex [GO:0005885]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament polymerization [GO:0030041]; Arp2/3 complex-mediated actin nucleation [GO:0034314] TISSUE SPECIFICITY: Expressed at low levels in all tissues with a relatively highest expression in inflorescences. {ECO:0000269|PubMed:15086808}. locus:504956012; AT2G33385 protein 2 3 complex subunit Arp2/3 complex 34 kDa subunit Q7XPZ3 Q7XPZ3_ORYSJ Os04g0512300 OsJ_15440 OSJNBa0004N05.15 OSNPB_040512300 FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. {ECO:0000256|RuleBase:RU364015}. ENOG411DV3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) Os02g0513700 protein (Fragment),Os06g0658400 protein (Fragment) A0A0P0VJN3,A0A0P0WZW8 A0A0P0VJN3_ORYSJ,A0A0P0WZW8_ORYSJ Os02g0513700 OSNPB_020513700,Os06g0658400 OSNPB_060658400 ENOG411DV3A Q9ZQ34,Q8L766,F4JR68 Y2433_ARATH,Q8L766_ARATH,F4JR68_ARATH Uncharacterized protein At2g24330,At4g31080 (Integral membrane metal-binding family protein (DUF2296)) (Uncharacterized protein At4g31080:At4g31090) (Uncharacterized protein At4g31090),Integral membrane metal-binding family protein (DUF2296) 45926,45343,49196 Uncharacterized protein At2g24330,At4g31080 (Integral membrane metal-binding family protein (DUF2296)) (Uncharacterized protein At4g31080:At4g31090) (Uncharacterized protein At4g31090),Integral membrane metal-binding family protein (DUF2296) endoplasmic reticulum tubular network [GO:0071782]; endoplasmic reticulum tubular network organization [GO:0071786],integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum tubular network [GO:0071782]; integral component of membrane [GO:0016021]; endoplasmic reticulum tubular network organization [GO:0071786] locus:2061047;,locus:2126634; AT2G24330,AT4G31080 Predicted integral membrane metal-binding protein (DUF2296) Os04g0672900 protein (cDNA clone:001-047-F09, full insert sequence) (cDNA clone:J013001F07, full insert sequence),Os02g0631000 protein (cDNA clone:J013159L03, full insert sequence),Os04g0522750 protein Q0J944,Q6H475,A0A0P0WCX1 Q0J944_ORYSJ,Q6H475_ORYSJ,A0A0P0WCX1_ORYSJ Os04g0672900 Os04g0672900 OSNPB_040672900,Os02g0631000 Os02g0631000 B1250G12.7 OsJ_07614 OSNPB_020631000,Os04g0522750 OSNPB_040522750 ENOG411DV3G SSL2 Q9SLG8 SSL2_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 2 (AtSSL2) (Strictosidine synthase) (Strictosidine synthase 10) (AtSS10) ARA:GQT-1199-MONOMER; 41475 Protein STRICTOSIDINE SYNTHASE-LIKE 2 (AtSSL2) (Strictosidine synthase) (Strictosidine synthase 10) (AtSS10) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058] locus:2040312; AT2G41290 strictosidine synthase Os12g0138800 protein (Strictosidine synthase family protein, expressed) (cDNA clone:J013000A24, full insert sequence),Os11g0142300 protein (Fragment),Os11g0142400 protein Q2QXZ1,A0A0N7KSE9,A0A0P0XZM5 Q2QXZ1_ORYSJ,A0A0N7KSE9_ORYSJ,A0A0P0XZM5_ORYSJ Os12g0138800 LOC_Os12g04424 OSNPB_120138800,Os11g0142300 OSNPB_110142300,Os11g0142400 OSNPB_110142400 ENOG411DV3F LRX3,LRX5,LRX4 Q9T0K5,Q9SN46,Q9LHF1 LRX3_ARATH,LRX5_ARATH,LRX4_ARATH Leucine-rich repeat extensin-like protein 3 (AtLRX3) (LRR/EXTENSIN3) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat extensin-like protein 5 (AtLRX5) (LRR/EXTENSIN5) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat extensin-like protein 4 (AtLRX4) (LRR/EXTENSIN4) (Cell wall hydroxyproline-rich glycoprotein) FUNCTION: Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. {ECO:0000250}. 82246,90836,54703 Leucine-rich repeat extensin-like protein 3 (AtLRX3) (LRR/EXTENSIN3) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat extensin-like protein 5 (AtLRX5) (LRR/EXTENSIN5) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat extensin-like protein 4 (AtLRX4) (LRR/EXTENSIN4) (Cell wall hydroxyproline-rich glycoprotein) cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; structural constituent of cell wall [GO:0005199]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; structural constituent of cell wall [GO:0005199]; cell wall organization [GO:0071555] DEVELOPMENTAL STAGE: Observed in emerging secondary roots and young leaves. During flower development, restricted to carpels, stamen filament, and the abscission zone of the floral whorls. {ECO:0000269|PubMed:12644681}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers, mostly in vascular tissues. {ECO:0000269|PubMed:12644681}.,TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:12644681}. locus:2142105;,locus:2124142;,locus:2094854; AT4G13340,AT4G18670,AT3G24480 leucine-rich repeat extensin-like protein Extensin-like (Os01g0594300 protein) (cDNA clone:001-201-A04, full insert sequence),Os01g0180000 protein (Putative leucine-rich repeat/extensin 1) (cDNA clone:J033122A11, full insert sequence),Os05g0180300 protein (Putative extensin) (cDNA, clone: J090091F22, full insert sequence),Extensin-like (Os01g0594300 protein) Q8L3T8,Q5VR46,Q5KQK4,Q5ZB68 Q8L3T8_ORYSJ,Q5VR46_ORYSJ,Q5KQK4_ORYSJ,Q5ZB68_ORYSJ B1103C09.1-1 Os01g0594300 P0451D05.14-1 OSNPB_010594300,Os01g0180000 Os01g0180000 OJ1174_D05.4 OsJ_00617 OSNPB_010180000 P0406H10.27,Os05g0180300 Os05g0180300 OSNPB_050180300 P0453H11.3,B1103C09.1-2 P0451D05.14-2 Os01g0594300 OSNPB_010594300 ENOG411DV3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0675300 protein) (cDNA clone:002-103-A07, full insert sequence) Q10FA4 Q10FA4_ORYSJ Os03g0675300 LOC_Os03g47190 OSNPB_030675300 ENOG411DV3D Q9SJH9 Q9SJH9_ARATH Expressed protein (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) (Uncharacterized protein At2g42770) (Uncharacterized protein At2g42770; F7D19.23) 25916 Expressed protein (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) (Uncharacterized protein At2g42770) (Uncharacterized protein At2g42770; F7D19.23) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; plastid [GO:0009536] locus:2052403; AT2G42770 Mpv17 / PMP22 family Os01g0730800 protein (cDNA clone:J023063A20, full insert sequence) Q5JNF1 Q5JNF1_ORYSJ Os01g0730800 Os01g0730800 OSNPB_010730800 P0435H01.29 ENOG411DPW9 CBSCBS2 Q9CAR3,A0A1P8AVI9 KINGL_ARATH,A0A1P8AVI9_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like (AKIN subunit gamma-1-like) (CBS domain-containing protein CBSCBS2),Cystathionine beta-synthase (CBS) protein FUNCTION: Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. {ECO:0000250}. 47818,39947 SNF1-related protein kinase regulatory subunit gamma-1-like (AKIN subunit gamma-1-like) (CBS domain-containing protein CBSCBS2),Cystathionine beta-synthase (CBS) protein carbohydrate metabolic process [GO:0005975],integral component of membrane [GO:0016021] locus:2196789; AT1G69800 CBS domain-containing protein Os01g0586600 protein A0A0P0V4K5 A0A0P0V4K5_ORYSJ Os01g0586600 OSNPB_010586600 ENOG411DPW5 MQB2.1 Q8GX94,A0A1P8BCD1 Q8GX94_ARATH,A0A1P8BCD1_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor like protein kinase),Leucine-rich repeat protein kinase family protein 67303,63672 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor like protein kinase),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2170668; AT5G62710 LRR receptor-like serine threonine-protein kinase FEI Leucine-rich repeat family protein, putative, expressed (Os12g0638100 protein) (cDNA clone:J033117B13, full insert sequence),Os12g0638100 protein (Fragment) Q2QLL2,A0A0P0YCU7 Q2QLL2_ORYSJ,A0A0P0YCU7_ORYSJ Os12g0638100 LOC_Os12g44090 Os12g0638100 OsJ_37009 OSNPB_120638100,Os12g0638100 OSNPB_120638100 ENOG411DPW4 EARLY FLOWERING 9 Q9LF02 Q9LF02_ARATH At5g16260 (RNA binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At5g16260) (Uncharacterized protein T21H19_180) early flowering in short days Early flowering under short days-Y. Noh-2009 57893 At5g16260 (RNA binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At5g16260) (Uncharacterized protein T21H19_180) cytosol [GO:0005829]; nucleus [GO:0005634]; U2 snRNP [GO:0005686]; U2-type spliceosomal complex [GO:0005684]; mRNA binding [GO:0003729]; mRNA splicing, via spliceosome [GO:0000398]; negative regulation of flower development [GO:0009910]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184] locus:2181452; AT5G16260 HIV Tat-specific factor 1 OSJNBa0067K08.9 protein (Os04g0496400 protein) Q7XQI1 Q7XQI1_ORYSJ Os04g0496400 OsJ_15326 OSJNBa0067K08.9 OSNPB_040496400 ENOG411DPW7 TIC32,Tic32-IVa A2RVM0,Q9LDY7,Q8H1Q6,A0A1P8B6P7,A0A1P8B3V5,A0A1P8B3J5,A0A1P8B3V0,F4JNJ2 TIC32_ARATH,Q9LDY7_ARATH,Q8H1Q6_ARATH,A0A1P8B6P7_ARATH,A0A1P8B3V5_ARATH,A0A1P8B3J5_ARATH,A0A1P8B3V0_ARATH,F4JNJ2_ARATH Short-chain dehydrogenase TIC 32, chloroplastic (EC 1.1.1.-) (Translocon at the inner envelope membrane of chloroplasts 32) (AtTIC32),NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein AT4g11410),NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At4g23420),NAD(P)-binding Rossmann-fold superfamily protein DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:15180984}. Embryo defective; Transition-J. Soll-2004 FUNCTION: Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. {ECO:0000269|PubMed:15180984}. ARA:AT4G11410-MONOMER;,ARA:AT4G23420-MONOMER; 1.1.1.- 34740,34804,34069,33603,28337,28995,28566,36035 Short-chain dehydrogenase TIC 32, chloroplastic (EC 1.1.1.-) (Translocon at the inner envelope membrane of chloroplasts 32) (AtTIC32),NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein AT4g11410),NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At4g23420),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; plasma membrane [GO:0005886]; oxidoreductase activity [GO:0016491]; protein transport [GO:0015031],oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in leaves and roots. {ECO:0000269|PubMed:15033972}. locus:2117969;,locus:2123066;,locus:2117959; AT4G23430,AT4G11410,AT4G23420 short-chain dehydrogenase Os09g0570300 protein (cDNA clone:006-310-E10, full insert sequence),Os11g0181700 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (cDNA clone:J013044J03, full insert sequence),Os11g0181700 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (cDNA clone:001-104-G08, full insert sequence),Os11g0181800 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (Short-chain dehydrogenase Tic32) (cDNA clone:J013084L13, full insert sequence) Q0IZG6,B7EBJ5,Q0IU69,Q53ML7 Q0IZG6_ORYSJ,B7EBJ5_ORYSJ,Q0IU69_ORYSJ,Q53ML7_ORYSJ Os09g0570300 Os09g0570300 OSNPB_090570300,Os11g0181700 LOC_Os11g07922 OSNPB_110181700,Os11g0181700 LOC_Os11g07922 Os11g0181700 OsJ_33194 OSNPB_110181700,LOC_Os11g07930 Os11g0181800 OsJ_33195 OSNPB_110181800 ENOG411DPW1 MEMB11,MEMB12 Q9SJL6,Q9FK28,A0A1P8AXF4,F4IP31 MEM11_ARATH,MEM12_ARATH,A0A1P8AXF4_ARATH,F4IP31_ARATH Membrin-11 (AtMEMB11) (27 kDa Golgi SNARE protein) (Golgi SNAP receptor complex member 2-1),Membrin-12 (AtMEMB12) (Golgi SNAP receptor complex member 2-2),Membrin FUNCTION: Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. {ECO:0000250}.,FUNCTION: Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. {ECO:0000256|PIRNR:PIRNR028865}. R-ATH-204005;R-ATH-5694530;R-ATH-6807878;R-ATH-6811438; 25628,25105,25384,25583 Membrin-11 (AtMEMB11) (27 kDa Golgi SNARE protein) (Golgi SNAP receptor complex member 2-1),Membrin-12 (AtMEMB12) (Golgi SNAP receptor complex member 2-2),Membrin cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],cis-Golgi network [GO:0005801]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein targeting to vacuole [GO:0006623]; regulation of innate immune response [GO:0045088]; regulation of protein secretion [GO:0050708]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],Golgi apparatus [GO:0005794]; membrane [GO:0016020]; SNAP receptor activity [GO:0005484]; protein transport [GO:0015031] locus:2057946;,locus:2177512; AT2G36900,AT5G50440 golgi SNAP receptor complex member 2 Membrin Q6AT61 Q6AT61_ORYSJ Os03g0655200 LOC_Os03g45260 Os03g0655200 OsJ_11948 OSJNBb0023J24.7 OSNPB_030655200 FUNCTION: Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. {ECO:0000256|PIRNR:PIRNR028865}. ENOG411DPW0 MTPC1 Q8L725 MTPC1_ARATH Metal tolerance protein C1 (AtMTPc1) (AtMTP6) FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. 51027 Metal tolerance protein C1 (AtMTPc1) (AtMTP6) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; cation transmembrane transporter activity [GO:0008324] locus:2043328; AT2G47830 metal tolerance protein Metal tolerance protein 2 (OsMTP2),Os03g0346800 protein Q10LJ2,A0A0P0VXB5 MTP2_ORYSJ,A0A0P0VXB5_ORYSJ MTP2 Os03g0346800 LOC_Os03g22550 OsJ_10821,Os03g0346800 OSNPB_030346800 FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. ENOG411DPW3 Q8GWV1,F4IBX4,F4IBX5 Q8GWV1_ARATH,F4IBX4_ARATH,F4IBX5_ARATH At1g78915 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g78915),Tetratricopeptide repeat (TPR)-like superfamily protein 42579,44708,45038 At1g78915 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g78915),Tetratricopeptide repeat (TPR)-like superfamily protein integral component of membrane [GO:0016021],chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:504956194; AT1G78915 NA Os07g0287100 protein A0A0P0X594 A0A0P0X594_ORYSJ Os07g0287100 OSNPB_070287100 ENOG411DPW2 ATTRANS 11 O49730 MRAY_ARATH Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog (Translocase I) FUNCTION: May be involved in glycosylation events. ARA:AT4G18270-MONOMER; 51720 Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog (Translocase I) integral component of membrane [GO:0016021]; phospho-N-acetylmuramoyl-pentapeptide-transferase activity [GO:0008963] DEVELOPMENTAL STAGE: Expressed during late flower bud development. TISSUE SPECIFICITY: Predominantly expressed in flowers and siliques (tapetum and ovule inner integument), but also found in roots, stems and leaves. locus:2141892; AT4G18270 Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog Os01g0210800 protein A0A0P0UZR0 A0A0P0UZR0_ORYSJ Os01g0210800 OSNPB_010210800 ENOG411DPWY TSO1,TCX2 Q9LUI3,F4JIF5,A0A1P8B4Z6,A0A1P8B4Y7 TSO1_ARATH,TCX2_ARATH,A0A1P8B4Z6_ARATH,A0A1P8B4Y7_ARATH CRC domain-containing protein TSO1,Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2),TESMIN/TSO1-like CXC 2 DISRUPTION PHENOTYPE: Despite a wild-type flower phenotype, the null mutant presents defects in pollen, carpel and ovule development, including a failure in megasporogenesis. Small siliques. {ECO:0000269|PubMed:18057042, ECO:0000269|PubMed:22072982, ECO:0000269|PubMed:9725857}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:22072982}. Serrated sepals; Unfused carpels; Long stigma papillae; Sterile; Abnormal integuments; Collapsed pollen-C. Gasser-2000 FUNCTION: Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.,FUNCTION: Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. 76277,74054,71966,71838 CRC domain-containing protein TSO1,Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2),TESMIN/TSO1-like CXC 2 nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; floral organ morphogenesis [GO:0048444]; regulation of cell division [GO:0051302]; regulation of meristem structural organization [GO:0009934],nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.,DEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.,TISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. locus:2094369;,locus:2130220; AT3G22780,AT4G14770 tesmin tso1-like cxc Os07g0176200 protein (Putative CXC domain protein TSO1),Os07g0176200 protein Q6ZEZ8,A0A0P0X2T6 Q6ZEZ8_ORYSJ,A0A0P0X2T6_ORYSJ Os07g0176200 OSNPB_070176200 P0534H07.18,Os07g0176200 OSNPB_070176200 ENOG411DPWX ALG9 Q9FZ49 ALG9_ARATH Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase (EC 2.4.1.259) (Alpha-1,2-mannosyltransferase ALG9) (Asparagine-linked glycosylation protein 9) (Dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase) (EC 2.4.1.261) FUNCTION: Required for N-linked oligosaccharide assembly. Adds the seventh and the ninth mannose residues in an alpha-1,2 linkage onto the dolichol-PP-oligosaccharide precursors dolichol-PP-Man(6)GlcNAc(2) and dolichol-PP-Man(8)GlcNAc(2). {ECO:0000269|PubMed:20023196}. MISCELLANEOUS: In the absence of ALG9 activity, the N-glycans transferred to proteins are aberrant, indicating that the oligosaccharyltransferase (OST) complex is substrate-tolerant. PATHWAY: Protein modification; protein glycosylation. ARA:AT1G16900-MONOMER; R-ATH-446193; 2.4.1.259;2.4.1.261; 2.4.1.259; 2.4.1.261 65083 Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase (EC 2.4.1.259) (Alpha-1,2-mannosyltransferase ALG9) (Asparagine-linked glycosylation protein 9) (Dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase) (EC 2.4.1.261) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; alpha-1,2-mannosyltransferase activity [GO:0000026]; dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity [GO:0052926]; dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity [GO:0052918]; GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity [GO:0004377]; kinase activity [GO:0016301]; oligosaccharide-lipid intermediate biosynthetic process [GO:0006490]; protein glycosylation [GO:0006486]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2015601; AT1G16900 dol-P-Man Man(6)GlcNAc(2)-PP-Dol alpha-12-mannosyltransferase-like Mannosyltransferase (EC 2.4.1.-) Q5QNA3 Q5QNA3_ORYSJ Os01g0209000 Os01g0209000 OsJ_00833 OSJNBa0016I09.30 OSNPB_010209000 ENOG411DPWT PP2A1,PP2A2,PP2A5,PP2A-3 Q07099,Q07098,O04951,A0A1P8AYS4,A0A1P8AYV1,F4IN38 PP2A1_ARATH,PP2A2_ARATH,PP2A5_ARATH,A0A1P8AYS4_ARATH,A0A1P8AYV1_ARATH,F4IN38_ARATH Serine/threonine-protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 1),Serine/threonine-protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 2),Serine/threonine-protein phosphatase PP2A-5 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 5),Serine/threonine-protein phosphatase (EC 3.1.3.16) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are hypersensitive to salt stress. {ECO:0000269|PubMed:27676158}. FUNCTION: Dephosphorylates and activates the actin-depolymerizing factor ADF1, which, in turn, regulates actin cytoskeleton remodeling and is involved in the blue light photoreceptor PHOT2-mediated chloroplast avoidance movements (PubMed:22642987). Associates with the serine/threonine-protein phosphatase PP2A regulatory subunits A and B' to positively regulates beta-oxidation of fatty acids and protoauxins in peroxisomes by dephosphorylating peroxisomal beta-oxidation-related proteins (PubMed:25489022). Acts as negative regulator of abscisic acid (ABA) signaling. May regulate ABA-dependent gene expression (PubMed:17617176). Involved in the light-dependent activation of nitrate reductase (PubMed:28656346). {ECO:0000269|PubMed:17617176, ECO:0000269|PubMed:22642987, ECO:0000269|PubMed:25489022, ECO:0000269|PubMed:28656346}.,FUNCTION: Associates with the serine/threonine-protein phosphatase PP2A regulatory subunits A and B' to positively regulates beta-oxidation of fatty acids and protoauxins in peroxisomes by dephosphorylating peroxisomal beta-oxidation-related proteins (PubMed:25489022). Involved in the positive regulation of salt stress responses. May function by increasing chloride channel activities on vacuolar membranes (PubMed:27676158). {ECO:0000269|PubMed:25489022, ECO:0000269|PubMed:27676158}. R-ATH-113501;R-ATH-198753;R-ATH-202670;R-ATH-5673000;R-ATH-5675221;R-ATH-69231;R-ATH-69273;R-ATH-975957; 3.1.3.16 34961,34934,35042,20818,20725,19801 Serine/threonine-protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 1),Serine/threonine-protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 2),Serine/threonine-protein phosphatase PP2A-5 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 5),Serine/threonine-protein phosphatase (EC 3.1.3.16) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; abscisic acid-activated signaling pathway [GO:0009738]; cellular protein localization [GO:0034613]; chloroplast avoidance movement [GO:0009903]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; positive regulation of fatty acid beta-oxidation [GO:0032000]; protein dephosphorylation [GO:0006470],cytosol [GO:0005829]; peroxisome [GO:0005777]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; regulation of auxin polar transport [GO:2000012],phosphoprotein phosphatase activity [GO:0004721],integral component of membrane [GO:0016021]; phosphoprotein phosphatase activity [GO:0004721] TISSUE SPECIFICITY: Expressed in root meristem, emerging lateral roots, leaf vasculature, stipules, guard cells, anthers and pollen grains. {ECO:0000269|PubMed:17617176}. locus:2025976;,locus:2194626;,locus:2020598; AT1G59830,AT1G10430,AT1G69960,AT2G42500 serine threonine-protein phosphatase Serine/threonine-protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16),Serine/threonine-protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16),Serine/threonine-protein phosphatase PP2A-4 catalytic subunit (EC 3.1.3.16),Serine/threonine-protein phosphatase (EC 3.1.3.16),Os10g0410600 protein Q0E2S4,Q0DBD3,A3C4N5,Q10R90,A0A0P0XU09 PP2A3_ORYSJ,PP2A1_ORYSJ,PP2A4_ORYSJ,Q10R90_ORYSJ,A0A0P0XU09_ORYSJ PP2A3 Os02g0217600 LOC_Os02g12580 OsJ_005728 P0027A02.2-1 P0027A02.2-2,PP2A1 Os06g0574500 LOC_Os06g37660 OsJ_020918 OSJNBa0006A22.44,PP2A4 Os10g0410600 LOC_Os10g27050 OsJ_030257 OsJ_31490,Os03g0167700 LOC_Os03g07150 Os03g0167700 OSNPB_030167700,Os10g0410600 OSNPB_100410600 ENOG411DPWW KOM F4I8K2,A0A1P8APQ9 RBL8_ARATH,A0A1P8APQ9_ARATH RHOMBOID-like protein 8 (AtRBL8) (EC 3.4.21.-) (Protein KOMPEITO),Rhomboid-like protein (EC 3.4.21.-) Abnormal pollen exine layer-K. Okada-2002 FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:22007993}.; FUNCTION: Probably essential for the meiosis stage-specific callose accumulation and pollen exine formation. {ECO:0000305|Ref.9}. 3.4.21.- 39315,43033 RHOMBOID-like protein 8 (AtRBL8) (EC 3.4.21.-) (Protein KOMPEITO),Rhomboid-like protein (EC 3.4.21.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252],integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Expressed in pollen mother cell. {ECO:0000305|Ref.9}. locus:2029376; AT1G77860 Rhomboid family NA NA NA NA NA NA NA ENOG411DPWQ PCMP-H52 Q9LTF4 PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630 66150 Putative pentatricopeptide repeat-containing protein At5g52630 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; cytidine to uridine editing [GO:0016554] locus:2149664; AT5G52630 Pentatricopeptide repeat-containing protein Os01g0651100 protein A0A0P0V5Z4 A0A0P0V5Z4_ORYSJ Os01g0651100 OSNPB_010651100 ENOG411DPWI RDR1 Q9LQV2 RDR1_ARATH RNA-dependent RNA polymerase 1 (AtRDRP1) (EC 2.7.7.48) (RNA-directed RNA polymerase 1) DISRUPTION PHENOTYPE: Upon viral infection, increased levels of TMV-cg, tobacco rattle virus (TRV) and CMV genomic viral RNAs. Reduced levels of TMV-cg-derived small RNAs and CMV-derived siRNAs. {ECO:0000269|PubMed:12650452, ECO:0000269|PubMed:19966292, ECO:0000269|PubMed:20190077}. FUNCTION: RNA-dependent direct polymerase involved in antiviral silencing. Required for the production of some small RNAs (mainly 21 and some 22 nucleotides) derived from the crucifer-infecting tobamovirus (TMV-cg). Required for turnip mosaic virus (TuMV) silencing and accumulation of viral siRNAs. Involved in cucumber mosaic virus (CMV) silencing. Required for the biogenesis of viral secondary siRNAs, process that follows the production of primary siRNAs derived from viral RNA replication. Specifically targets the positive-strand of the 3 RNA genomes of CMV and preferentially amplifies the 5'-terminal siRNAs of each viral genomic RNA. Not involved in the production of siRNAs derived from a single-stranded 336-nucleotide satellite RNA of CMV. {ECO:0000269|PubMed:12650452, ECO:0000269|PubMed:19308254, ECO:0000269|PubMed:19966292, ECO:0000269|PubMed:20190077}. 2.7.7.48; 2.7.7.48 126214 RNA-dependent RNA polymerase 1 (AtRDRP1) (EC 2.7.7.48) (RNA-directed RNA polymerase 1) RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]; defense response [GO:0006952]; positive regulation of posttranscriptional gene silencing [GO:0060148]; production of siRNA involved in RNA interference [GO:0030422]; response to salicylic acid [GO:0009751]; response to virus [GO:0009615]; wax biosynthetic process [GO:0010025] locus:2006822; AT1G14790 rna-dependent rna polymerase Probable RNA-dependent RNA polymerase 1 (OsRDR1) (EC 2.7.7.48) Q0DXS3 RDR1_ORYSJ RDR1 Os02g0736200 LOC_Os02g50330 FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000250}. ENOG411DPWH EMB2360 P42770,P48641 GSHRP_ARATH,GSHRC_ARATH Glutathione reductase, chloroplastic (GR) (GRase) (EC 1.8.1.7) (Protein EMBRYO DEFECTIVE 2360),Glutathione reductase, cytosolic (GR) (GRase) (EC 1.8.1.7) (OBP29) Embryo defective; Globular-D. Meinke-2004 FUNCTION: Maintains high levels of reduced glutathione in the chloroplast.,FUNCTION: Maintains high levels of reduced glutathione in the cytosol. MISCELLANEOUS: The active site is a redox-active disulfide bond. ARA:AT3G24170-MONOMER; R-ATH-3299685;R-ATH-499943;R-ATH-5263617;R-ATH-5628897; 1.8.1.7 60852,53871 Glutathione reductase, chloroplastic (GR) (GRase) (EC 1.8.1.7) (Protein EMBRYO DEFECTIVE 2360),Glutathione reductase, cytosolic (GR) (GRase) (EC 1.8.1.7) (OBP29) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; flavin adenine dinucleotide binding [GO:0050660]; glutathione-disulfide reductase activity [GO:0004362]; NADP binding [GO:0050661]; cell redox homeostasis [GO:0045454]; glutathione metabolic process [GO:0006749]; response to oxygen radical [GO:0000305],peroxisome [GO:0005777]; flavin adenine dinucleotide binding [GO:0050660]; glutathione-disulfide reductase activity [GO:0004362]; NADP binding [GO:0050661]; cell redox homeostasis [GO:0045454]; glutathione metabolic process [GO:0006749]; response to oxygen radical [GO:0000305] locus:2102410;,locus:2093691; AT3G54660,AT3G24170 Glutathione reductase Glutathione reductase, cytosolic (GR) (GRase) (EC 1.8.1.7),Glutathione reductase, chloroplast, putative, expressed (Os03g0163300 protein) (Putative glutathione reductase) (Putative glutathione reductase (NADPH)) (cDNA clone:J033128J11, full insert sequence),Os02g0813500 protein (Fragment),Os10g0415300 protein (Fragment) P48642,Q8S5T1,A0A0P0VR27,A0A0P0VR44,A0A0P0XUU0 GSHRC_ORYSJ,Q8S5T1_ORYSJ,A0A0P0VR27_ORYSJ,A0A0P0VR44_ORYSJ,A0A0P0XUU0_ORYSJ GRC2 RGRC2 Os02g0813500 LOC_Os02g56850 OJ1293_E04.4-1 OsJ_08842 OSJNBa0053L11.26-1,Os03g0163300 OJ1607A12.5 LOC_Os03g06740 Os03g0163300 OJ1123F12.19 OsJ_09517 OSNPB_030163300,Os02g0813500 OSNPB_020813500,Os10g0415300 OSNPB_100415300 FUNCTION: Maintains high levels of reduced glutathione in the cytosol. MISCELLANEOUS: The active site is a redox-active disulfide bond. ENOG411DPWK TON2 Q9FEE2 TON2_ARATH Probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 (Protein EMBRYO DEFFECTIVE 40) (Protein GORDO) (Protein TONNEAU 2) DISRUPTION PHENOTYPE: Extreme phenotype with disrupted cell elongation and a highly compressed apical-basal axis due to disorganization of the interphase microtubule array and lack of the preprophase band before mitosis. Sterile flowers. {ECO:0000269|PubMed:11971138}. Embryo and seedling defective-G. Jurgens; D. Bouchez-2002 FUNCTION: Probable regulatory subunit of type 2A protein phosphatase involved in the control of the dynamic organization of the cortical cytoskeleton. Plays an important role in the organization of interphase microtubule arrays in part through the regulation of nucleation geometry. Required for the reorganization of cortical arrays in response to light. {ECO:0000269|PubMed:11971138, ECO:0000269|PubMed:22395485}. 55070 Probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 (Protein EMBRYO DEFFECTIVE 40) (Protein GORDO) (Protein TONNEAU 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; calcium ion binding [GO:0005509]; cortical cytoskeleton organization [GO:0030865]; microtubule cytoskeleton organization [GO:0000226]; preprophase band assembly [GO:0000913]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:11971138}. locus:2183003; AT5G18580 serine threonine-protein phosphatase 2A regulatory subunit B Os05g0149800 protein (Putative tonneau 2) (cDNA clone:J023044K03, full insert sequence),Os05g0149800 protein Q65XE2,A0A0P0WI03 Q65XE2_ORYSJ,A0A0P0WI03_ORYSJ Os05g0149800 Os05g0149800 OJ1504_G04.12 OsJ_17133 OSNPB_050149800,Os05g0149800 OSNPB_050149800 ENOG411DPWE HT1 Q2MHE4 HT1_ARATH Serine/threonine-protein kinase HT1 (EC 2.7.11.1) (High leaf temperature protein 1) FUNCTION: Serine/threonine kinase involved in the control of stomatal movement in response to CO(2). Shows a reduced response to ABA or light compared to CO(2). {ECO:0000269|PubMed:16518390}. 2.7.11.1 44281 Serine/threonine-protein kinase HT1 (EC 2.7.11.1) (High leaf temperature protein 1) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556] TISSUE SPECIFICITY: Mainly localizes in guard cells. Expressed at low level in leaves, stems, roots and flowers. {ECO:0000269|PubMed:16518390}. AT1G62400 Serine threonine-protein kinase Os06g0636600 protein (cDNA clone:002-117-C10, full insert sequence),Os03g0588400 protein (Fragment) Q67V13,A0A0N7KHL0 Q67V13_ORYSJ,A0A0N7KHL0_ORYSJ Os06g0636600 Os06g0636600 OSJNBa0019I19.51 OSNPB_060636600 P0523F01.1,Os03g0588400 OSNPB_030588400 ENOG411DPWD Q8L402,A0A1P8APC4,F4HQD2 Q8L402_ARATH,A0A1P8APC4_ARATH,F4HQD2_ARATH Regulator of Vps4 activity in the MVB pathway protein (Uncharacterized protein At1g79910),Regulator of Vps4 activity in the MVB pathway protein R-ATH-6798695; 43774,37272,42216 Regulator of Vps4 activity in the MVB pathway protein (Uncharacterized protein At1g79910),Regulator of Vps4 activity in the MVB pathway protein protein transport [GO:0015031] locus:2017869; AT1G79910 Regulator of Vps4 activity in the MVB pathway Os02g0159200 protein (cDNA clone:J033095F16, full insert sequence),Os02g0159200 protein (Fragment) Q6ETI1,A0A0P0VF21 Q6ETI1_ORYSJ,A0A0P0VF21_ORYSJ Os02g0159200 Os02g0159200 B1103G11.24 OSNPB_020159200,Os02g0159200 OSNPB_020159200 ENOG411DPWF F4IN58,A0A1P8AYL8,A0A1P8AYH1 PIEZO_ARATH,A0A1P8AYL8_ARATH,A0A1P8AYH1_ARATH Piezo-type mechanosensitive ion channel homolog,Piezo-type mechanosensitive ion channel component FUNCTION: Pore-forming subunit of a mechanosensitive non-specific cation channel, that conducts both sodium and potassium ions. {ECO:0000250}. MISCELLANEOUS: Piezo comes from the Greek 'piesi' meaning pressure. 282275,285053,272006 Piezo-type mechanosensitive ion channel homolog,Piezo-type mechanosensitive ion channel component integral component of membrane [GO:0016021]; membrane [GO:0016020]; cation channel activity [GO:0005261]; mechanically-gated ion channel activity [GO:0008381]; cellular response to mechanical stimulus [GO:0071260]; detection of mechanical stimulus [GO:0050982]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; mechanically-gated ion channel activity [GO:0008381] locus:2066367; AT2G48060 Protein of unknown function (DUF3595) NA NA NA NA NA NA NA ENOG411DPWA Q9ZUI0,A0A1P8B036 Y2241_ARATH,A0A1P8B036_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 (EC 2.7.11.1),Leucine-rich receptor-like protein kinase family protein 2.7.11.1 107791,109385 Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 (EC 2.7.11.1),Leucine-rich receptor-like protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2047525; AT2G24130 leucine-rich repeat receptor-like serine threonine-protein kinase Os09g0423200 protein,Os06g0186300 protein,Os06g0186100 protein A0A0P0XMC8,A0A0P0WTA7,A0A0P0WTB4 A0A0P0XMC8_ORYSJ,A0A0P0WTA7_ORYSJ,A0A0P0WTB4_ORYSJ Os09g0423200 OSNPB_090423200,Os06g0186300 OSNPB_060186300,Os06g0186100 OSNPB_060186100 ENOG411DPWC ECP31,RAB28 Q9LJ95,Q9LJ97 LEA32_ARATH,LEA31_ARATH Late embryogenesis abundant protein 32 (LEA 32) (Embryogenic cell protein 31) (AtECP31),Late embryogenesis abundant protein 31 (LEA 31) (Protein RESPONSIVE TO ABSCISIC ACID 28) (AtRAB28) FUNCTION: LEA proteins are late embryonic proteins abundant in higher plant seed embryos. The function of those proteins is not known. {ECO:0000305}.,FUNCTION: LEA proteins are late embryonic proteins abundant in higher plant seed embryos. The function of those proteins is not known (Probable). Promotes germination rate. Enhances cation toxicity (e.g. lithium ion) and osmotic stress (e.g. NaCl and sorbitol) tolerance during germination and in seedlings (PubMed:12175017). {ECO:0000269|PubMed:12175017, ECO:0000305}. 26779,26744 Late embryogenesis abundant protein 32 (LEA 32) (Embryogenic cell protein 31) (AtECP31),Late embryogenesis abundant protein 31 (LEA 31) (Protein RESPONSIVE TO ABSCISIC ACID 28) (AtRAB28) cytosol [GO:0005829]; nucleus [GO:0005634],cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; cellular ion homeostasis [GO:0006873]; response to lithium ion [GO:0010226]; seed germination [GO:0009845] DEVELOPMENTAL STAGE: In mature embryos, restricted to provascular tissues. Also present in the seed coat outer tegument and silique epidermis. Levels decrease during seed imbibition and germination. {ECO:0000269|PubMed:10412913}. TISSUE SPECIFICITY: Embryo specific, only in dry mature seeds. Expressed at low levels. {ECO:0000269|PubMed:10412913, ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Embryo specific, only in dry mature seeds. {ECO:0000269|PubMed:10412913}. locus:2076996;,locus:2077081; AT3G22500,AT3G22490 late embryogenesis abundant protein Os03g0747400 protein A0A0P0W3I3 A0A0P0W3I3_ORYSJ Os03g0747400 OSNPB_030747400 ENOG411EAXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EAE6 CORI3 Q8VYP2,Q9SUR6,F4JP99 TAT4_ARATH,CORI3_ARATH,F4JP99_ARATH Probable aminotransferase TAT4 (EC 2.6.1.-) (Tyrosine aminotransferase 4),Cystine lyase CORI3 (EC 4.4.1.35) (Protein CORONATINE INDUCED 3) (Protein JASMONIC ACID RESPONSIVE 2) (Tyrosine aminotransferase CORI3),Tyrosine transaminase family protein FUNCTION: Possesses cystine lyase activity in vitro. Does not possess tyrosine aminotransferase, alanine aminotransferase, aspartate aminotransferase and tryptophan aminotransferase activities. {ECO:0000269|PubMed:12525491}. MISCELLANEOUS: Induction by wounding requires COI1. {ECO:0000269|PubMed:9342878}. ARA:AT4G23590-MONOMER;,ARA:AT4G23600-MONOMER; R-ATH-71182; 2.6.1.-,4.4.1.35 47494,47039,42229 Probable aminotransferase TAT4 (EC 2.6.1.-) (Tyrosine aminotransferase 4),Cystine lyase CORI3 (EC 4.4.1.35) (Protein CORONATINE INDUCED 3) (Protein JASMONIC ACID RESPONSIVE 2) (Tyrosine aminotransferase CORI3),Tyrosine transaminase family protein pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520],apoplast [GO:0048046]; vacuole [GO:0005773]; cystathionine beta-lyase activity [GO:0004121]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520]; hyperosmotic salinity response [GO:0042538]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to microbial phytotoxin [GO:0010188]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in cotyledons, sepals, pistils, flower buds, phloem companion cells and vascular tissues of petiole, leaf, filament and fruit. {ECO:0000269|PubMed:21559970}. locus:2128434;,locus:2128459; AT4G23590,AT4G23600 Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411E2X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ELK NA NA NA NA NA NA NA ENOG411E2EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase Os06g0242700 protein (cDNA clone:J023043D23, full insert sequence),Os06g0241400 protein (Putative benzothiadiazole-induced S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase 1) (cDNA, clone: J065122H19, full insert sequence),Os06g0242000 protein (Fragment),Os06g0243300 protein B7EHF3,Q67VH4,A0A0N7KLU6,A0A0P0WUZ9 B7EHF3_ORYSJ,Q67VH4_ORYSJ,A0A0N7KLU6_ORYSJ,A0A0P0WUZ9_ORYSJ Os06g0242700 Os06g0242700 OSNPB_060242700,Os06g0241400 OSJNBa0001B11.17 OSNPB_060241400,Os06g0242000 OSNPB_060242000,Os06g0243300 OSNPB_060243300 ENOG411E2EK SUS2 Q00917,A0A1P8BF00,A0A1P8BF02 SUS2_ARATH,A0A1P8BF00_ARATH,A0A1P8BF02_ARATH Sucrose synthase 2 (AtSUS2) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2),Sucrose synthase (EC 2.4.1.13) DISRUPTION PHENOTYPE: No visible phenotype. Diminution of the starch content of developing seeds and increased lipid accumulation early during seed development. {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:20559653}. No visible phenotype.,The amounts of glucose fructose sucrose cellulose (roots) and starch in the mutant were not statistically significantly different from those of the equivalent wild-type lines grown under the same conditions at the same time.,Activity of SUS was reduced by about one-third in roots of the double mutant relative to Col-0 but otherwise the mutant was indistinguishable from Col-0.,When grown in soil or hydroponically the double mutant line was not obviously different from wild-type controls. Elevated sucrose levels; Low fructose and starch levels; No other phenotypes detected-A. Tiessen-2010 FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. Modulates metabolic homeostasis and directs carbon towards starch synthesis in developing seeds. {ECO:0000269|PubMed:20559653, ECO:0000269|PubMed:22228409}.,FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000256|RuleBase:RU280817}. 2.4.1.13; 2.4.1.13 92064,84462,90765 Sucrose synthase 2 (AtSUS2) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2),Sucrose synthase (EC 2.4.1.13) cytosol [GO:0005829]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plastid membrane [GO:0042170]; sucrose synthase activity [GO:0016157]; response to hypoxia [GO:0001666]; seed maturation [GO:0010431]; starch metabolic process [GO:0005982]; sucrose metabolic process [GO:0005985],sucrose synthase activity [GO:0016157]; sucrose metabolic process [GO:0005985] DEVELOPMENTAL STAGE: Specifically and highly expressed during seed maturation at 12 days after flowering (at the protein level). {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168}. TISSUE SPECIFICITY: Detected in the whole plant but at lower levels. Predominantly expressed in developing siliques. Also detected in the root tip. Detected in the embryo, endosperm and seed coat (at the protein level). {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168, ECO:0000269|PubMed:18635527, ECO:0000269|PubMed:18701523}. locus:2155894; AT5G49190 Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways NA NA NA NA NA NA NA ENOG411E2EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q5U1Q7 Q5U1Q7_ORYSJ prx36 LOC_Os03g05770 Os03g0152300 OsJ_09443 OSNPB_030152300 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. {ECO:0000256|SAAS:SAAS00709921}. ENOG411E2E5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA root phototropism protein 3-like NA NA NA NA NA NA NA ENOG411EFBQ ERF122 Q38Q40 EF122_ARATH Ethylene-responsive transcription factor ERF122 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 20614 Ethylene-responsive transcription factor ERF122 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2158118; AT5G67000 AP2 NA NA NA NA NA NA NA ENOG411DQD9 CYP703A2 Q9LNJ4 C70A2_ARATH Cytochrome P450 703A2 (EC 1.14.13.206) (Protein DEFECTIVE IN EXINE FORMATION 2) DISRUPTION PHENOTYPE: Impaired pollen development and partial male-sterile phenotype. {ECO:0000269|PubMed:17496121}. Slightly longer inflorescences an extended period of blooming a reduced number of elongated siliques and overall reduced seed set. About a third of the siliques failed to develop. Pollen was not developed (lower and middle part of the inflorescence) or reduced (apical flowers). Reduced male fertility: Complete loss of pollen exine layer-S. Bak-2007 FUNCTION: Involved in pollen wall development. Catalyzes the conversion of medium-chain saturated fatty acids to the corresponding monohydroxylated fatty acids, with a preferential hydroxylation of lauric acid at the C-7 position. In-chain hydroxylated fatty acids, together with omega-hydroxylated fatty acids, are key monomeric aliphatic building blocks for sporopollenin synthesis during exine formation. {ECO:0000269|PubMed:17496121}. ARA:AT1G01280-MONOMER;MetaCyc:AT1G01280-MONOMER; 1.14.13.206 57854 Cytochrome P450 703A2 (EC 1.14.13.206) (Protein DEFECTIVE IN EXINE FORMATION 2) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; medium-chain fatty acid biosynthetic process [GO:0051792]; medium-chain fatty acid metabolic process [GO:0051791]; pollen development [GO:0009555]; pollen exine formation [GO:0010584]; pollen wall assembly [GO:0010208]; secondary metabolite biosynthetic process [GO:0044550]; sporopollenin biosynthetic process [GO:0080110] DEVELOPMENTAL STAGE: Specifically expressed in the tapetum cell layer and the microspores of anthers at the tetrad stage. Expression starts to decrease during pollen maturation and tapetum cell degeneration to finally disappear. {ECO:0000269|PubMed:17496121}. locus:2035267; AT1G01280 cytochrome P450 Cytochrome P450 703A2 (EC 1.14.13.206) (Laurate 7-monooxygenase) Q7EZR4 C70A3_ORYSJ CYP703A3 Os08g0131100 LOC_Os08g03682 OSJNBb0009H02.9 P0582D05.139 DISRUPTION PHENOTYPE: Male sterile. Defective in pollen exine and anther epicuticular layer development. {ECO:0000269|PubMed:24798002}. FUNCTION: Involved in pollen exine and anther epicuticular layer development. Catalyzes the in-chain hydroxylation of lauric acid (C12:0) preferentially on position 7, generating 7-hydroxylated lauric acid. Does not possess activity with other fatty acids (C14:0, C16:0, C16:1, and C18:0). Participates in a conserved pathway of in-chain hydroxylation of lauric acid required for anther cuticle and pollen exine formation. Directly regulated by TDR, a known regulator of tapetum programmed cell death (PCD) and pollen exine formation. {ECO:0000269|PubMed:24798002}. ENOG411DQD8 SAHH2,SAHH1,HOG1 Q9LK36,O23255,A8MQP1,F4JTV5,F4JTV4 SAHH2_ARATH,SAHH1_ARATH,A8MQP1_ARATH,F4JTV5_ARATH,F4JTV4_ARATH Adenosylhomocysteinase 2 (AdoHcyase 2) (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 2),Adenosylhomocysteinase 1 (AdoHcyase 1) (EC 3.3.1.1) (Protein EMBRYO DEFECTIVE 1395) (Protein HOMOLOGY-DEPENDENT GENE SILENCING 1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1),S-adenosyl-L-homocysteine hydrolase,Adenosylhomocysteinase (EC 3.3.1.1) Null: Embryo defective; Globular; Knockdown: Delayed growth-D. Meinke-2003 FUNCTION: Adenosylhomocysteine is a competitive inhibitor of S-adenosyl-L-methionine-dependent methyl transferase reactions; therefore adenosylhomocysteinase may play a key role in the control of methylations via regulation of the intracellular concentration of adenosylhomocysteine. {ECO:0000250}.,FUNCTION: Adenosylhomocysteine is a competitive inhibitor of S-adenosyl-L-methionine-dependent methyl transferase reactions; therefore adenosylhomocysteinase may play a key role in the control of methylations via regulation of the intracellular concentration of adenosylhomocysteine. Required for DNA methylation-dependent gene silencing. MISCELLANEOUS: In contrast to SAHH1, a mutation in the C-terminus of this protein is not sufficient to abolish transcriptional gene silencing.,MISCELLANEOUS: Null mutations are homozygous lethal. PATHWAY: Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1.,PATHWAY: Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1. {ECO:0000256|RuleBase:RU000548}. ARA:AT3G23810-MONOMER;,ARA:AT4G13940-MONOMER; R-ATH-156581;R-ATH-1614635; 3.3.1.1 53159,53379,35532,40019,48407 Adenosylhomocysteinase 2 (AdoHcyase 2) (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 2),Adenosylhomocysteinase 1 (AdoHcyase 1) (EC 3.3.1.1) (Protein EMBRYO DEFECTIVE 1395) (Protein HOMOLOGY-DEPENDENT GENE SILENCING 1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1),S-adenosyl-L-homocysteine hydrolase,Adenosylhomocysteinase (EC 3.3.1.1) cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; adenosylhomocysteinase activity [GO:0004013]; NAD binding [GO:0051287]; one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]; S-adenosylmethionine cycle [GO:0033353],apoplast [GO:0048046]; cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; adenosylhomocysteinase activity [GO:0004013]; copper ion binding [GO:0005507]; NAD binding [GO:0051287]; embryo development ending in seed dormancy [GO:0009793]; methylation-dependent chromatin silencing [GO:0006346]; one-carbon metabolic process [GO:0006730]; posttranscriptional gene silencing [GO:0016441]; S-adenosylhomocysteine catabolic process [GO:0019510]; S-adenosylmethionine cycle [GO:0033353],adenosylhomocysteinase activity [GO:0004013]; one-carbon metabolic process [GO:0006730] locus:2095193;,locus:2129256; AT3G23810,AT4G13940 adenosylhomocysteinase Adenosylhomocysteinase (EC 3.3.1.1) (Fragment),Os11g0455500 protein (Fragment) A0A0P0Y1Y5,A0A0N7KSW1 A0A0P0Y1Y5_ORYSJ,A0A0N7KSW1_ORYSJ Os11g0455500 OSNPB_110455500 ENOG411DQD5 PDH-E1 ALPHA O24457 ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic (EC 1.2.4.1) FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. ARA:AT1G01090-MONOMER; 1.2.4.1 47174 Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic (EC 1.2.4.1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; pyruvate dehydrogenase (acetyl-transferring) activity [GO:0004739]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; glycolytic process [GO:0006096] locus:2200980; AT1G01090 Pyruvate dehydrogenase E1 Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic (EC 1.2.4.1) Q7XTJ3 ODPA3_ORYSJ Os04g0119400 LOC_Os04g02900 OsJ_13591 OSJNBa0020P07.11 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. ENOG411DQD4 Q84K25,A0A1P8BAA7 Q84K25_ARATH,A0A1P8BAA7_ARATH Conserved oligomeric Golgi complex component-related / COG complex component-like protein (Uncharacterized protein At5g11980),Conserved oligomeric Golgi complex component-related / COG complex component-like protein R-ATH-6807878;R-ATH-6811438; 63052,53323 Conserved oligomeric Golgi complex component-related / COG complex component-like protein (Uncharacterized protein At5g11980),Conserved oligomeric Golgi complex component-related / COG complex component-like protein Golgi transport complex [GO:0017119]; plasmodesma [GO:0009506]; Golgi organization [GO:0007030]; Golgi vesicle transport [GO:0048193]; intra-Golgi vesicle-mediated transport [GO:0006891]; pollen tube growth [GO:0009860],Golgi transport complex [GO:0017119] locus:2143074; AT5G11980 conserved oligomeric Golgi complex Conserved oligomeric Golgi complex subunit 8 (COG complex subunit 8) (Component of oligomeric Golgi complex 8) Q2QP91 Q2QP91_ORYSJ LOC_Os12g35290 Os12g0538300 OsJ_36370 OSNPB_120538300 ENOG411DQD7 PHYA P14712,A0A1P8AVD9 PHYA_ARATH,A0A1P8AVD9_ARATH Phytochrome A (Protein ELONGATED HYPOCOTYL 8) (Protein FAR RED ELONGATED 1) (Protein FAR RED ELONGATED HYPOCOTYL 2),Phytochrome DISRUPTION PHENOTYPE: Blind to far-red (FR). Impaired inhibition of hypocotyl elongation and cotyledons expansion under continuous FR light conditions. {ECO:0000269|PubMed:19482971}. Arsenic accumulation appeared slightly decreased in the mutants but it did not differ significantly from that of wild type.,Mutant showed no light dependence of arsenic tolerance whereas wild-type seedlings showed an increased arsenate tolerance when grown in the dark compared with WT seedlings grown in the light.,When grown under constant light mutant seeds showed a significantly higher rate of survival than WT seeds in the presence of arsenate.,Whereas in WT seeds germination could be promoted by a single red or far-red pulse given after 48 h but not after 3 h (matching the time of highest phyA abundance) the germination was no longer promoted in the mutant in either treatment.,Less inhibition of thiol synthesis was observed in the mutant.,No clear differences in arsenic speciation (arsenate or arsenite) in the mutant compared to wild type.,The responsiveness of the mutant to increasing fluence rates of Rc was essentially identical to the wild type.,During cFR irradiation mutant seedlings were almost completely unresponsive compared to WT.,No other significant differences from WT were detected in mutant seedlings in response to cR cB or cW.,Phenotype not described.,The prr7 mutant phenotype in Rc was more dramatic in the phyA-101 background especially in the range from 0.1 to 10 ;mol·m-2·s-1. However in FRc phyA prr7 double mutant seedlings were indistinguishable from phyA seedlings.,Under hourly R pulses the pks mutation also had no effect in the phyA background.,After 5 days growth under far-red light the double mutant showed the same elongated hypocotyl phenotype as the loss-of-function allele phyA-211.,When treated with a short pulse of far-red light after seed surface sterilization double mutant seeds germinated while majority of wild-type seeds did not. Long hypocotyl under far-red light-N. Harberd-1993 FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenetic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. Involved in the flowering time regulation. Can phosphorylate FHY1 and, possibly, FHL, in red light conditions; this inactivates their co-shuttling to the nucleus (PubMed:19208901). Regulates phototropic responses both in the nucleus (e.g. hypocotyl elongation and cotyledon opening under high-irradiance conditions and seed germination under very-low-fluence conditions) and in the cytoplasm (e.g. negative gravitropism in blue light and red-enhanced phototropism) (PubMed:17566111). {ECO:0000269|PubMed:12468726, ECO:0000269|PubMed:15707897, ECO:0000269|PubMed:17566111, ECO:0000269|PubMed:19208901, ECO:0000269|PubMed:19482971, ECO:0000269|PubMed:21969386}.,FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. {ECO:0000256|PIRNR:PIRNR000084}. MISCELLANEOUS: PHYA association with FHY1 and FHY3 protect underphosphorylated PHYA from being recognized by the COP1/SPA complex. 124501,125018 Phytochrome A (Protein ELONGATED HYPOCOTYL 8) (Protein FAR RED ELONGATED 1) (Protein FAR RED ELONGATED HYPOCOTYL 2),Phytochrome cytoplasm [GO:0005737]; nuclear body [GO:0016604]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; far-red light photoreceptor activity [GO:0031516]; identical protein binding [GO:0042802]; mRNA binding [GO:0003729]; phosphorelay sensor kinase activity [GO:0000155]; protein homodimerization activity [GO:0042803]; protein kinase activity [GO:0004672]; red or far-red light photoreceptor activity [GO:0009883]; detection of visible light [GO:0009584]; gravitropism [GO:0009630]; negative regulation of translation [GO:0017148]; photomorphogenesis [GO:0009640]; phototropism [GO:0009638]; protein-chromophore linkage [GO:0018298]; protein-tetrapyrrole linkage [GO:0017006]; red light signaling pathway [GO:0010161]; regulation of transcription, DNA-templated [GO:0006355]; response to arsenic-containing substance [GO:0046685]; response to continuous far red light stimulus by the high-irradiance response system [GO:0010201]; response to far red light [GO:0010218]; response to very low fluence red light stimulus [GO:0010203]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay sensor kinase activity [GO:0000155]; photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]; detection of visible light [GO:0009584]; protein-chromophore linkage [GO:0018298]; protein-tetrapyrrole linkage [GO:0017006]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2012300; AT1G09570 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region Phytochrome A Q10DU0 PHYA_ORYSJ PHYA PHY18 Os03g0719800 LOC_Os03g51030 B1377B10.8 OAJNBa0031O09.11 OsJ_011877 FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. ENOG411DQD6 HSP90-6 F4JFN3 HS906_ARATH Heat shock protein 90-6, mitochondrial (AtHSP90.6) (AtHsp90-6) (Heat shock protein 89-1) (Hsp89-1) FUNCTION: Molecular chaperone which stabilizes unfolding protein intermediates and functions as a folding molecular chaperone that assists the non-covalent folding of proteins in an ATP-dependent manner. {ECO:0000250|UniProtKB:P27323}. 90567 Heat shock protein 90-6, mitochondrial (AtHSP90.6) (AtHsp90-6) (Heat shock protein 89-1) (Hsp89-1) cell wall [GO:0005618]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to stress [GO:0006950] locus:2077352; AT3G07770 Heat shock protein Hsp90 protein, expressed (Os12g0514500 protein),Os12g0514500 protein (Fragment) Q0IN14,A0A0P0YAL1 Q0IN14_ORYSJ,A0A0P0YAL1_ORYSJ Os12g0514500 LOC_Os12g32986 Os12g0514500 OSNPB_120514500,Os12g0514500 OSNPB_120514500 ENOG411DQD1 CEQORH Q9SV68 QORH_ARATH Chloroplast envelope quinone oxidoreductase homolog (ceQORH) (EC 1.3.1.-) FUNCTION: NADPH-dependent alpha,beta-unsaturated oxoene reductase reducing the double bond of medium-chain (C9) to long-chain (C18) reactive electrophile species deriving from poly-unsaturated fatty acid peroxides. The best substrates are 13-lipoxygenase-derived gamma-ketols, but is unable to reduce the double bond of short-chain alkenals and alkenones such as acrolein, crotonaldehyde, 3-buten-2-one, 4-hexen-3-one and trans-2-hexenal, or quinones such as duroquinone, decylubiquinone, coenzyme Q0, menadione, menaquinone and phylloquinone. Can use trans-2-nonenal, trans-3-decen-2-one, 4-hydroxynonenal, 12-oxo-10(E) dodecanoate (traumatin), 4-oxononenal, trans-1,3 diphenyl-2-propenone, trans-1,4-diphenyl-2-butene-1,4-dione, 9-oxo-12,13-epoxy-(10E)-octadecenoic acid (trans-EKODE-1b), 9-hydroxy-12-oxo-10(E)-octadecenoic acid, 9-Hydroxy-12-oxo-10(E),15(Z)-octadecadienoic acid and 9,13-dihydroxy-10-oxo-11-octadecenoic acid as substrates, but has no activity with 13(R,S)-hydroperoxy-9(Z),11(E)-octadecadienoic acid (13-HPOD), 9(S),12(S),13(S)-trihydroxy-10(E)-octadecenoic acid, 13-hydroxy-12-oxo-9(Z)-octadecenoic acid, 9-oxo-10(E),12(Z)-octadecadienoic acid (9-KODE), 13-oxo-9(Z),11(E)-octadecadienoic acid (13-KODE) and 12-oxo-10,15(Z)-phytodienoic acid (12-OPDA). {ECO:0000269|PubMed:26678323}. MISCELLANEOUS: The trimeric TOC159/75/34 complex is not involved in chloroplast import of CEQORH. {ECO:0000269|PubMed:17636260}. ARA:GQT-1722-MONOMER; 1.3.1.- 34436 Chloroplast envelope quinone oxidoreductase homolog (ceQORH) (EC 1.3.1.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid membrane [GO:0009535]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; oxidoreductase activity [GO:0016491] locus:2123206; AT4G13010 quinone-oxidoreductase homolog chloroplastic-like Os04g0372700 protein (Fragment) Q0JDV3 Q0JDV3_ORYSJ Os04g0372700 Os04g0372700 OSNPB_040372700 ENOG411DQD0 CKA4,CKA1,CKA2,CKA3 O64816,Q08467,Q08466,O64817 CSK2P_ARATH,CSK21_ARATH,CSK22_ARATH,CSK23_ARATH Casein kinase II subunit alpha-4, chloroplastic (CK2-alpha4) (EC 2.7.11.1) (Plastid-targeted casein kinase 2 alpha) (cpCK2alpha),Casein kinase II subunit alpha-1 (CK II) (EC 2.7.11.1) (Casein kinase alpha 1) (AtCKA1),Casein kinase II subunit alpha-2 (CK II) (EC 2.7.11.1) (Casein kinase alpha 2) (AtCKA2),Casein kinase II subunit alpha-3 (CK II) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Defects in root, hypocotyl, cotyledon and leaf development. Delayed flowering. Reduced growth, delayed flowering and hyperaccumulation of anthocyanins. {ECO:0000269|PubMed:26883224}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the triple mutant cka1, cka2 and cka3 show altered circadian rhythms and delayed flowering under long day conditions. {ECO:0000269|PubMed:21900482}. FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. The alpha chain contains the catalytic site (By similarity). Involved in the regulation of various developmental processes (PubMed:26025542). Involved in the regulation of plant growth and flowering time (PubMed:26883224). Involved in retrograde signaling in plant responses to abscisic acid (ABA) and heat stress. May act as an enhancing factor in abiotic stress signaling through modulation of the expression of some molecular players in retrograde signaling (PubMed:24803505). Phosphorylates RuBisCo activase (RCA) at Thr-78 (PubMed:27064346). {ECO:0000250|UniProtKB:Q08467, ECO:0000269|PubMed:24803505, ECO:0000269|PubMed:26025542, ECO:0000269|PubMed:26883224, ECO:0000269|PubMed:27064346}.,FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Phosphorylates casein in vitro (PubMed:7678767). The alpha chain contains the catalytic site. The tetrameric holoenzyme CK2, composed of two alpha and two beta subunits, phosphorylates the transcription factor GBFl, resulting in stimulation of its DNA binding activity (PubMed:7696877). CK2 phosphorylates the transcription factor PIF1 after an exposure to light, resulting in a proteasome-dependent degradation of PIF1 and promotion of photomorphogenesis (PubMed:21330376). CK2 phosphorylates translation initiation factors. May participate in the regulation of the initiation of translation (PubMed:19509278, PubMed:19509420). Acts as circadian clock component that maintains the correct period length through phosphorylation of CCA1 (PubMed:21900482). Required for the maintenance and control of genomic stability and chromatin structure (PubMed:22487192). May act as an ectokinase that phosphorylates several extracellular proteins. {ECO:0000269|PubMed:19509278, ECO:0000269|PubMed:19509420, ECO:0000269|PubMed:21330376, ECO:0000269|PubMed:21900482, ECO:0000269|PubMed:22487192, ECO:0000269|PubMed:7678767, ECO:0000269|PubMed:7696877}.,FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates (By similarity). The alpha chain contains the catalytic site. The tetrameric holoenzyme CK2, composed of two alpha and two beta subunits, phosphorylates the transcription factor PIF1 after an exposure to light, resulting in a proteasome-dependent degradation of PIF1 and promotion of photomorphogenesis (PubMed:21330376). CK2 phosphorylates translation initiation factors. May participate in the regulation of the initiation of translation (PubMed:19509278). Acts as circadian clock component that maintains the correct period length through phosphorylation of CCA1 (PubMed:21900482). May act as an ectokinase that phosphorylates several extracellular proteins. {ECO:0000250|UniProtKB:Q08467, ECO:0000269|PubMed:19509278, ECO:0000269|PubMed:21330376, ECO:0000269|PubMed:21900482}.,FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. The alpha chain contains the catalytic site. The tetrameric holoenzyme CK2 is composed of two alpha and two beta subunits (By similarity). Acts as circadian clock component that maintains the correct period length through phosphorylation of CCA1 (PubMed:21900482). {ECO:0000250|UniProtKB:Q08467, ECO:0000269|PubMed:21900482}. R-ATH-2514853;R-ATH-6804756; 2.7.11.1; 2.7.11.1 50236,47640,47233,39309 Casein kinase II subunit alpha-4, chloroplastic (CK2-alpha4) (EC 2.7.11.1) (Plastid-targeted casein kinase 2 alpha) (cpCK2alpha),Casein kinase II subunit alpha-1 (CK II) (EC 2.7.11.1) (Casein kinase alpha 1) (AtCKA1),Casein kinase II subunit alpha-2 (CK II) (EC 2.7.11.1) (Casein kinase alpha 2) (AtCKA2),Casein kinase II subunit alpha-3 (CK II) (EC 2.7.11.1) chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; chloroplast-nucleus signaling pathway [GO:0010019]; regulation of growth [GO:0040008]; regulation of photoperiodism, flowering [GO:2000028],nucleolus [GO:0005730]; nucleus [GO:0005634]; protein kinase CK2 complex [GO:0005956]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; regulation of circadian rhythm [GO:0042752],nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; regulation of circadian rhythm [GO:0042752],nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; chromatin organization [GO:0006325]; circadian rhythm [GO:0007623]; DNA repair [GO:0006281]; regulation of cell cycle [GO:0051726]; regulation of circadian rhythm [GO:0042752]; regulation of response to DNA damage stimulus [GO:2001020]; response to gamma radiation [GO:0010332]; response to UV-C [GO:0010225] TISSUE SPECIFICITY: Expressed in root tips, lateral root primordia, cotyledons, leaf primordia, sepals, filaments, stigma, and anthers. {ECO:0000269|PubMed:26883224}.,TISSUE SPECIFICITY: Seems to be present in all plant organs. But seems to be less expressed than CKA2. {ECO:0000269|PubMed:7678767}.,TISSUE SPECIFICITY: Seems to be present in all plant organs. But seems to be more expressed than CKA1. {ECO:0000269|PubMed:7678767}. locus:2045339;,locus:2045349; AT2G23070,AT5G67380,AT3G50000,AT2G23080 casein kinase II Inactive casein kinase II subunit alpha-2 (OsCKA2) (Protein HEADING DATE 6),Casein kinase II alpha subunit (Os07g0114400 protein) Q9AQU1,Q8H386 HD6N_ORYSJ,Q8H386_ORYSJ HD6 CKA2 Os03g0762000 LOC_Os03g55389 OSJNBb0048A17.1,OJ1513_F02.134 Os07g0114400 OSNPB_070114400 FUNCTION: The Nipponbare allele of HD6 contains a premature stop codon, resulting in a truncated non-functional product. {ECO:0000269|PubMed:11416158}. ENOG411DQD3 CCX3,CCX4 Q9LJI2,Q9SYG9 CCX3_ARATH,CCX4_ARATH Cation/calcium exchanger 3 (AtCCX3) (Protein CATION CALCIUM EXCHANGER 3) (Protein CATION EXCHANGER 9),Cation/calcium exchanger 4 (AtCCX4) (Protein CATION CALCIUM EXCHANGER 4) (Protein CATION EXCHANGER 10) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18775974}. same as smb-3 single mutant,Heterozygotes and homozygotes have a WT phenotype FUNCTION: Endomembrane-localized H(+)-dependent K(+) and Na(+) transporter. May have a function associated with the pollen vacuole during tube elongation and polarized top growth. {ECO:0000269|PubMed:18775974}.,FUNCTION: Membrane-localized H(+)-dependent K(+) and Na(+) transporter. {ECO:0000250, ECO:0000269|PubMed:18775974}. R-ATH-425561;R-ATH-8949215; 70157,70801 Cation/calcium exchanger 3 (AtCCX3) (Protein CATION CALCIUM EXCHANGER 3) (Protein CATION EXCHANGER 9),Cation/calcium exchanger 4 (AtCCX4) (Protein CATION CALCIUM EXCHANGER 4) (Protein CATION EXCHANGER 10) cytoplasmic vesicle membrane [GO:0030659]; endomembrane system [GO:0012505]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; antiporter activity [GO:0015297]; cation transmembrane transporter activity [GO:0008324]; manganese ion transmembrane transporter activity [GO:0005384]; potassium ion transmembrane transporter activity [GO:0015079]; sodium ion transmembrane transporter activity [GO:0015081]; cellular cation homeostasis [GO:0030003]; response to cation stress [GO:0043157],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; cation transport [GO:0006812]; potassium ion transport [GO:0006813]; sodium ion transport [GO:0006814] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:18775974}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and pollen. {ECO:0000269|PubMed:18775974}. locus:2087507;,locus:505006185; AT3G14070,AT1G54115 cation calcium exchanger Cation exchanger, putative, expressed (Os03g0180000 protein) (Putative potassium-dependent sodium-calcium exchanger-like protein) Q8GS69 Q8GS69_ORYSJ OSJNBa0050H14.15 LOC_Os03g08230 Os03g0180000 OSJNBb0076N15.2 OSNPB_030180000 ENOG411DQD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Os07g0501700 protein (Zinc finger and C2 domain protein-like) (cDNA clone:J023068D10, full insert sequence) Q6ZII7 Q6ZII7_ORYSJ Os07g0501700 OJ1112_F06.15 OSNPB_070501700 ENOG411DQDM T14E10_200 Q9M1G5 Q9M1G5_ARATH Kinetochore protein (Uncharacterized protein T14E10_200) FUNCTION: Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division. {ECO:0000305|PubMed:29356153}. 63332 Kinetochore protein (Uncharacterized protein T14E10_200) condensed nuclear chromosome kinetochore [GO:0000778]; Ndc80 complex [GO:0031262]; structural constituent of cytoskeleton [GO:0005200]; attachment of mitotic spindle microtubules to kinetochore [GO:0051315] locus:2096996; AT3G54630 Kinetochore protein Os08g0468400 protein (Putative Hec1 protein) Q6ZC35 Q6ZC35_ORYSJ Os08g0468400 Os08g0468400 OSNPB_080468400 P0470B03.27 ENOG411DQDN A0A1R7T3D6,F4K1I4 A0A1R7T3D6_ARATH,F4K1I4_ARATH Zn-dependent exopeptidases superfamily protein 49158,43279 Zn-dependent exopeptidases superfamily protein integral component of membrane [GO:0016021]; metallocarboxypeptidase activity [GO:0004181]; zinc ion binding [GO:0008270],extracellular space [GO:0005615]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; metallocarboxypeptidase activity [GO:0004181]; zinc ion binding [GO:0008270] locus:2157617; AT5G42320 Carboxypeptidase Os02g0119300 protein (cDNA clone:J013020E09, full insert sequence) Q6YUT3 Q6YUT3_ORYSJ Os02g0119300 Os02g0119300 OJ1217_F02.18 OSJNBb0088N06.2 OSNPB_020119300 ENOG411DQDI ATJ15 Q9ZSY2 DNJ15_ARATH Chaperone protein dnaJ 15 (AtDjB15) (AtJ15) (Protein ALTERED RESPONSE TO GRAVITY) (AtARG1) DISRUPTION PHENOTYPE: Roots and hypocotyls reorient slowly upon gravistimulation. Plants are normal for phototropism and for responses to hormones such as auxin, abscisic acid, gibberellins and ethylene. They also accumulate starch like the wild-type. In response to gravistimulation arg1-2 lacks cytoplasmic pH changes in columella cells and has a bad repartition of auxin that accumulates in root tips instead of forming a gradient. {ECO:0000269|PubMed:14507996, ECO:0000269|PubMed:9927707}. Abnormal hypocotyl and root gravitropism-P. Masson-1999 FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to be involved in early gravitropic signal transduction within the gravity-perceiving cells (statocytes), where it influences pH changes and auxin distribution. Probably affects the localization and/or activity of auxin efflux carrier components (PIN proteins) or other proteins involved in lateral auxin transport. {ECO:0000250, ECO:0000269|PubMed:14507996, ECO:0000269|PubMed:9927707}. 45484 Chaperone protein dnaJ 15 (AtDjB15) (AtJ15) (Protein ALTERED RESPONSE TO GRAVITY) (AtARG1) cytoskeleton [GO:0005856]; endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; cytoskeletal protein binding [GO:0008092]; positive gravitropism [GO:0009958] TISSUE SPECIFICITY: Expressed at high levels in root cap, root tip meristematic region and elongation zones, and at lower levels in mature part of roots (at protein level). Constitutively expressed in seedlings, etiolated or not, roots, rosette leaves, cauline leaves, stems, flowers, siliques and pollen. {ECO:0000269|PubMed:14507996, ECO:0000269|PubMed:9927707}. locus:2202334; AT1G68370 chaperone protein dnaJ NA NA NA NA NA NA NA ENOG411DQDH Pit1,PIT1 Q9XF50,A0A1P8B7F7,A0A1P8AS75,A0A1P8B7F8,F4HXK4,A0A1P8AS78 Q9XF50_ARATH,A0A1P8B7F7_ARATH,A0A1P8AS75_ARATH,A0A1P8B7F8_ARATH,F4HXK4_ARATH,A0A1P8AS78_ARATH At4g02075 (PIT1) (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein 25319,23041,23570,20134,25667,18043 At4g02075 (PIT1) (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion binding [GO:0008270],integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270],zinc ion binding [GO:0008270],integral component of membrane [GO:0016021] locus:505006426;,locus:2196085; AT4G02075,AT1G02610 Protein of unknown function (DUF3675) Os01g0303600 protein (Zinc finger protein-like) Q657H7 Q657H7_ORYSJ Os01g0303600 Os01g0303600 B1146F03.38 OSNPB_010303600 P0475H04.5 ENOG411DQDK Q9SSP4,Q93YZ9 Q9SSP4_ARATH,Q93YZ9_ARATH At1g72820/F3N23_2 (F3N23.2 protein) (Mitochondrial substrate carrier family protein),AT5g26200/T19G15_50 (Mitochondrial substrate carrier family protein) 37130,37029 At1g72820/F3N23_2 (F3N23.2 protein) (Mitochondrial substrate carrier family protein),AT5g26200/T19G15_50 (Mitochondrial substrate carrier family protein) integral component of mitochondrial outer membrane [GO:0031307]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839] locus:2032728;,locus:2179704; AT1G72820,AT5G26200 solute carrier family 25 member 44-like Mitochondrial substrate carrier-like protein (Os09g0444700 protein),Os03g0175200 protein (Fragment) Q67U56,A0A0P0VTR5 Q67U56_ORYSJ,A0A0P0VTR5_ORYSJ OJ1123_B08.12 Os09g0444700 OSNPB_090444700,Os03g0175200 OSNPB_030175200 ENOG411DQDJ MJI6.21 Q9LHK9,F4JK17 Q9LHK9_ARATH,F4JK17_ARATH Cofactor-independent phosphoglycerate mutase (Phosphonopyruvate decarboxylase-like protein) (Uncharacterized protein At3g30841),Cofactor-independent phosphoglycerate mutase ARA:AT3G30841-MONOMER; 53292,53125 Cofactor-independent phosphoglycerate mutase (Phosphonopyruvate decarboxylase-like protein) (Uncharacterized protein At3g30841),Cofactor-independent phosphoglycerate mutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [GO:0046537]; metal ion binding [GO:0046872]; metabolic process [GO:0008152],cytosol [GO:0005829]; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [GO:0046537]; metal ion binding [GO:0046872]; metabolic process [GO:0008152] locus:2829676;,locus:2133747; AT3G30841,AT4G09520 phosphoglycerate Os12g0536000 protein A0A0N7KU54 A0A0N7KU54_ORYSJ Os12g0536000 OSNPB_120536000 ENOG411DQDE P59278,F4I9N3,A0A1I9LQB9,A0A1I9LQC0,F4IXJ0 Y1745_ARATH,F4I9N3_ARATH,A0A1I9LQB9_ARATH,A0A1I9LQC0_ARATH,F4IXJ0_ARATH Uncharacterized protein At1g51745,Tudor/PWWP/MBT superfamily protein 65070,55161,55445,69644,69859 Uncharacterized protein At1g51745,Tudor/PWWP/MBT superfamily protein locus:4010713764; AT1G51745,AT3G21295 NA Os01g0558500 protein,Os01g0558500 protein (Fragment) Q8S9U1,A0A0P0V407 Q8S9U1_ORYSJ,A0A0P0V407_ORYSJ Os01g0558500 Os01g0558500 B1064G04.8 B1144D11.30 OSNPB_010558500,Os01g0558500 OSNPB_010558500 ENOG411DQDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 20 Os09g0427800 protein,Os08g0445700 protein (Putative trehalose-6-phosphate synthase),Os08g0445700 protein (Putative trehalose-6-phosphate synthase) (cDNA clone:J013124K21, full insert sequence) A3BZ14,Q6ZCH2,Q6ZCH3 A3BZ14_ORYSJ,Q6ZCH2_ORYSJ,Q6ZCH3_ORYSJ Os09g0427800 OsJ_29437 OSNPB_090427800,P0479C12.25-2 Os08g0445700 OSNPB_080445700,P0479C12.25-1 Os08g0445700 OsJ_27501 OSNPB_080445700 ENOG411DQDG KOR2 O04478 GUN7_ARATH Endoglucanase 7 (EC 3.2.1.4) (Endo-1,4-beta glucanase 7) ARA:AT1G65610-MONOMER; 3.2.1.4 69836 Endoglucanase 7 (EC 3.2.1.4) (Endo-1,4-beta glucanase 7) integral component of membrane [GO:0016021]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245] DEVELOPMENTAL STAGE: Early expressed in the development of root hairs within the root differentiation zone. Expressed late in the development of leaf trichomes when the stalks and branches are expanded. {ECO:0000269|PubMed:11488474}. TISSUE SPECIFICITY: Expressed in basal region of leaf blade and proximal parts of leaf and floral organ. {ECO:0000269|PubMed:11488474}. locus:2034158; AT1G65610 Endoglucanase Endoglucanase 12 (EC 3.2.1.4) (Endo-1,4-beta glucanase 12) (OsGLU3) Q7XUK4 GUN12_ORYSJ GLU3 Os04g0497200 LOC_Os04g41970 OSJNBa0067K08.14 ENOG411DQDF Q93V62 Q93V62_ARATH AT4g27450/F27G19_50 (Aluminum induced protein with YGL and LRDR motifs) (Uncharacterized protein At4g27450) 27622 AT4g27450/F27G19_50 (Aluminum induced protein with YGL and LRDR motifs) (Uncharacterized protein At4g27450) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2123994; AT4G27450 Stem-specific protein Os04g0679400 protein,Os04g0679400 protein (Fragment) A3AYP1,A0A0P0WGG2,A0A0N7KJX8 A3AYP1_ORYSJ,A0A0P0WGG2_ORYSJ,A0A0N7KJX8_ORYSJ Os04g0679400 OsJ_16640 OSNPB_040679400,Os04g0679400 OSNPB_040679400 ENOG411DQDA Q940N4 Q940N4_ARATH AT4g22740/T12H17_130 (Glycine-rich protein) (Uncharacterized protein At4g22740) 38741 AT4g22740/T12H17_130 (Glycine-rich protein) (Uncharacterized protein At4g22740) plasma membrane [GO:0005886] locus:2132644; AT4G22740 NA Glycine-rich protein-like (Os06g0134900 protein) (cDNA clone:J033122E01, full insert sequence),Os08g0117900 protein (Putative glycine-rich protein) Q5VNV0,Q6ZJ59 Q5VNV0_ORYSJ,Q6ZJ59_ORYSJ Os06g0134900 Os06g0134900 OSNPB_060134900 P0001H02.18 P0548D03.3,Os08g0117900 OJ1005_B05.2 OsJ_25836 OSNPB_080117900 P0470F10.25 ENOG411DQDC RDL6,RF9,RF45,RDL5,RXW24L,CW9 Q9XIF0,Q9LQ54,Q8W3K3,P0DI18,P0DI17,Q9SX38,Q8W474,F4IBE4,P0DI16,Q8W3K0,Q9C646,A0A1P8AMI2,A0A1P8AWT5,A0A1P8AU71 DRL13_ARATH,DRL12_ARATH,DRL8_ARATH,DRL45_ARATH,DRL11_ARATH,DRL4_ARATH,DRL7_ARATH,DRL10_ARATH,DRL44_ARATH,DRL9_ARATH,RX24L_ARATH,A0A1P8AMI2_ARATH,A0A1P8AWT5_ARATH,A0A1P8AU71_ARATH Putative disease resistance protein At1g59780,Probable disease resistance protein At1g59620 (CW9),Putative disease resistance protein At1g58400,Probable disease resistance protein RDL6,Probable disease resistance protein RF9,Putative disease resistance protein At1g50180,Probable disease resistance protein At1g58390,Probable disease resistance protein RF45,Probable disease resistance protein RDL5,Probable disease resistance protein At1g58602,Probable disease resistance protein RXW24L,Disease resistance protein (CC-NBS-LRR class) family,NB-ARC domain-containing disease resistance protein FUNCTION: Potential disease resistance protein.,FUNCTION: Probable disease resistance protein. {ECO:0000250}.,FUNCTION: Potential disease resistance protein. {ECO:0000250}.,FUNCTION: Possible disease resistance protein. 103630,101033,105677,121045,97275,104596,117047,131655,104333,85997,100659,102075 Putative disease resistance protein At1g59780,Probable disease resistance protein At1g59620 (CW9),Putative disease resistance protein At1g58400,Probable disease resistance protein RDL6,Probable disease resistance protein RF9,Putative disease resistance protein At1g50180,Probable disease resistance protein At1g58390,Probable disease resistance protein RF45,Probable disease resistance protein RDL5,Probable disease resistance protein At1g58602,Probable disease resistance protein RXW24L,Disease resistance protein (CC-NBS-LRR class) family,NB-ARC domain-containing disease resistance protein plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952] locus:2025916;,locus:2011982;,locus:2037639;,locus:504956184;,locus:504956186;,locus:2037623; AT1G59780,AT1G59620,AT1G58400,AT1G59218,AT1G58848,AT1G50180,AT1G58390,AT1G58807,AT1G59124,AT1G58602,AT1G58410 Disease resistance protein NB-ARC domain containing protein, expressed (Os10g0183000 protein) (Putative disease resistance protein) (cDNA clone:J013014C11, full insert sequence),NB-ARC domain containing protein, expressed (Os11g0633500 protein) (cDNA clone:J013055N19, full insert sequence) Q7G6C5,Q2R0S9 Q7G6C5_ORYSJ,Q2R0S9_ORYSJ LOC_Os10g10360 Os10g0183000 OsJ_30898 OSJNAb0022I16.6 OSJNBb0022I16.14 OSNPB_100183000,Os11g0633500 LOC_Os11g41540 Os11g0633500 OSNPB_110633500 ENOG411DQDB psaB P56767 PSAB_ARATH Photosystem I P700 chlorophyll a apoprotein A2 (EC 1.97.1.12) (PSI-B) (PsaB) FUNCTION: PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. {ECO:0000255|HAMAP-Rule:MF_00482}. MetaCyc:MONOMER-1100; 1.97.1.12 82475 Photosystem I P700 chlorophyll a apoprotein A2 (EC 1.97.1.12) (PSI-B) (PsaB) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; 4 iron, 4 sulfur cluster binding [GO:0051539]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; photosynthesis [GO:0015979]; protein-chromophore linkage [GO:0018298] locus:504954658; ATCG00340 PsaA and PsaB bind P700 the primary electron donor of photosystem I (PSI) as well as the electron acceptors A0 A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase converting photonic excitation into a charge separation which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0 A1 FX FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin (By similarity) Photosystem I P700 chlorophyll a apoprotein A2 (EC 1.97.1.12) (PSI-B) (PsaB) P0C358 PSAB_ORYSJ psaB LOC_Osp1g00330 Nip049 FUNCTION: PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. {ECO:0000255|HAMAP-Rule:MF_00482}. ENOG411DQDY RPL9B; RPL9C,RPL9D P49209,Q9SZX9,A0A1P8B5B3 RL91_ARATH,RL92_ARATH,A0A1P8B5B3_ARATH 60S ribosomal protein L9-1,60S ribosomal protein L9-2,Ribosomal protein L6 family R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 22018,21974,19714 60S ribosomal protein L9-1,60S ribosomal protein L9-2,Ribosomal protein L6 family chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; adaxial/abaxial pattern specification [GO:0009955]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2196646;locus:2206965;,locus:2127661; AT1G33120AT1G33140;,AT4G10450 60S ribosomal protein 60S ribosomal protein L9,Os02g0103700 protein (cDNA clone:001-104-A12, full insert sequence) (cDNA clone:J033086N17, full insert sequence) P49210,Q0E4R7 RL9_ORYSJ,Q0E4R7_ORYSJ RPL9 YK426 Os09g0485900 LOC_Os09g31180 OsJ_29817,Os02g0103700 Os02g0103700 OSNPB_020103700 ENOG411DQDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q7XV59 Q7XV59_ORYSJ Os04g0437300 OSJNBa0006B20.11 OSNPB_040437300 ENOG411DQDU SAE2 Q9SJT1,F4IHI1 SAE2_ARATH,F4IHI1_ARATH SUMO-activating enzyme subunit 2 (EC 6.3.2.-) (Protein EMBRYO DEFECTIVE 2764) (Ubiquitin-like 1-activating enzyme E1B),SUMO-activating enzyme 2 DISRUPTION PHENOTYPE: Embryonic lethal. {ECO:0000269|PubMed:17644626}. Embryo defective; Preglobular / Globular-D. Meinke-2007 FUNCTION: The dimeric enzyme acts as an E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. {ECO:0000269|PubMed:17644626}. PATHWAY: Protein modification; protein sumoylation. ARA:GQT-249-MONOMER; R-ATH-3065676; 6.3.2.- 78526,70055 SUMO-activating enzyme subunit 2 (EC 6.3.2.-) (Protein EMBRYO DEFECTIVE 2764) (Ubiquitin-like 1-activating enzyme E1B),SUMO-activating enzyme 2 cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; SUMO activating enzyme activity [GO:0019948]; embryo development ending in seed dormancy [GO:0009793]; protein sumoylation [GO:0016925],ATP binding [GO:0005524]; metal ion binding [GO:0046872]; SUMO activating enzyme activity [GO:0019948]; protein sumoylation [GO:0016925] locus:2050069; AT2G21470 sumo-activating enzyme Os07g0586500 protein (cDNA clone:J013164A10, full insert sequence),Os07g0586500 protein Q0D529,A0A0P0X8K2 Q0D529_ORYSJ,A0A0P0X8K2_ORYSJ Os07g0586500 Os07g0586500 OSNPB_070586500,Os07g0586500 OSNPB_070586500 ENOG411DQDT SAMDC2,SAMDC1,SAMDC3 Q9S7T9,Q96286,Q9LSU6 DCAM2_ARATH,DCAM1_ARATH,DCAM3_ARATH S-adenosylmethionine decarboxylase proenzyme 2 (AdoMetDC2) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain],S-adenosylmethionine decarboxylase proenzyme 1 (AdoMetDC1) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain],S-adenosylmethionine decarboxylase proenzyme 3 (AdoMetDC3) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] DISRUPTION PHENOTYPE: Reduction in the length of stem internodes. Increased thickness of veins in leaves and inflorescence stems. Altered morphology of xylem vessel elements. The double mutants of bud2-1 and samdc1-1 are embryonic lethal. {ECO:0000269|PubMed:16699540}. Dwarf; Short hypocotyl and petioles; Abnormal vascular bundle patterning-J. Li -2006 FUNCTION: Essential for biosynthesis of the polyamines spermidine and spermine. Essential for polyamine homeostasis, and normal plant embryogenesis, growth and development. {ECO:0000250|UniProtKB:Q96286}.,FUNCTION: Essential for biosynthesis of the polyamines spermidine and spermine. Essential for polyamine homeostasis, and normal plant embryogenesis, growth and development. {ECO:0000269|PubMed:16699540}. PATHWAY: Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1. {ECO:0000305}. ARA:AT5G15950-MONOMER;,ARA:AT3G25570-MONOMER; R-ATH-351202; 4.1.1.50; 4.1.1.50 40010,40403,38290 S-adenosylmethionine decarboxylase proenzyme 2 (AdoMetDC2) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain],S-adenosylmethionine decarboxylase proenzyme 1 (AdoMetDC1) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain],S-adenosylmethionine decarboxylase proenzyme 3 (AdoMetDC3) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] cytosol [GO:0005829]; adenosylmethionine decarboxylase activity [GO:0004014]; S-adenosylmethioninamine biosynthetic process [GO:0006557]; spermidine biosynthetic process [GO:0008295]; spermine biosynthetic process [GO:0006597],cytosol [GO:0005829]; adenosylmethionine decarboxylase activity [GO:0004014]; gene silencing [GO:0016458]; plant organ development [GO:0099402]; polyamine biosynthetic process [GO:0006596]; S-adenosylmethioninamine biosynthetic process [GO:0006557]; spermidine biosynthetic process [GO:0008295]; spermine biosynthetic process [GO:0006597]; viral genome replication [GO:0019079] locus:2146132;,locus:2076834;,locus:2094473; AT5G15950,AT3G02470,AT3G25570 S-adenosylmethionine decarboxylase proenzyme S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SAMDC) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain],S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50),Os02g0611200 protein (Fragment),Os04g0498600 protein (Fragment) Q0JC10,Q6K9B8,Q6F4N6,A0A0P0VLG9,A0A0P0WC31 DCAM_ORYSJ,Q6K9B8_ORYSJ,Q6F4N6_ORYSJ,A0A0P0VLG9_ORYSJ,A0A0P0WC31_ORYSJ SAMDC Os04g0498600 LOC_Os04g42090 OsJ_004076 OSJNBa0029H02.4 OSJNBa0067K08.23,Os02g0611200 Os02g0611200 OJ1004_A05.7 OJ1476_F05.33 OSNPB_020611200,SAMDC1 P0418B08.27-1 Os09g0424300 OsJ_29417 OSNPB_090424300,Os02g0611200 OSNPB_020611200,Os04g0498600 OSNPB_040498600 ENOG411DQDW AMPD O80452 AMPD_ARATH AMP deaminase (AtAMPD) (EC 3.5.4.6) (Protein EMBRYONIC FACTOR 1) Embryo defective; Preglobular-C.M. Liu-2004 FUNCTION: AMP deaminase plays a critical role in energy metabolism. Essential for the transition from zygote to embryo. {ECO:0000269|PubMed:15918887}. PATHWAY: Purine metabolism; IMP biosynthesis via salvage pathway; IMP from AMP: step 1/1. ARA:AT2G38280-MONOMER; R-ATH-6798695;R-ATH-74217; 3.5.4.6; 3.5.4.6 95130 AMP deaminase (AtAMPD) (EC 3.5.4.6) (Protein EMBRYONIC FACTOR 1) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; integral component of mitochondrial outer membrane [GO:0031307]; intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634]; AMP deaminase activity [GO:0003876]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein histidine kinase binding [GO:0043424]; embryo development ending in seed dormancy [GO:0009793]; IMP salvage [GO:0032264]; response to abscisic acid [GO:0009737] DEVELOPMENTAL STAGE: Expressed in both male and female gametophytes, at the zygote stage, in the endosperm, and during early embryo development. Observed in cotyledonary embryos and in the basal part of the embryo, but not in the suspensor or in mature embryos. Also expressed during somatic embryogenesis. {ECO:0000269|PubMed:15918887}. TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers, pollen grains, pollen tubes and siliques, and at a lower level in stems. {ECO:0000269|PubMed:15918887}. locus:2042902; AT2G38280 AMP deaminase Probable AMP deaminase (EC 3.5.4.6),Os05g0349200 protein (Fragment) Q84NP7,A0A0P0WL35 AMPD_ORYSJ,A0A0P0WL35_ORYSJ AMPD Os07g0693500 LOC_Os07g49270 OsJ_25692 P0034A04.129,Os05g0349200 OSNPB_050349200 FUNCTION: AMP deaminase plays a critical role in energy metabolism. {ECO:0000250}. ENOG411DQDV INT4,INT2,INT3 O23492,Q9C757,Q9ZQP6 INT4_ARATH,INT2_ARATH,INT3_ARATH Inositol transporter 4 (Myo-inositol-proton symporter INT4) (Protein INOSITOL TRANSPORTER 4),Probable inositol transporter 2,Probable inositol transporter 3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17951450}. No visible phenotype. FUNCTION: Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol. {ECO:0000269|PubMed:16603666, ECO:0000269|PubMed:17951450}.,FUNCTION: Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate. {ECO:0000269|PubMed:17951450}.,FUNCTION: Plasma membrane inositol-proton symporter. {ECO:0000250, ECO:0000269|PubMed:17951450}. R-ATH-429593; 62892,63449,63172 Inositol transporter 4 (Myo-inositol-proton symporter INT4) (Protein INOSITOL TRANSPORTER 4),Probable inositol transporter 2,Probable inositol transporter 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; glucose transmembrane transporter activity [GO:0005355]; myo-inositol:proton symporter activity [GO:0005366]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; myo-inositol transport [GO:0015798]; signaling [GO:0023052],integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] TISSUE SPECIFICITY: Highly expressed in pollen and phloem companion cells. {ECO:0000269|PubMed:16603666}.,TISSUE SPECIFICITY: Expressed in the tapetum, but not in pollen grains. Detected in leaf vascular tissue and in roots. {ECO:0000269|PubMed:17951450}. locus:2130689;,locus:2009832;,locus:2058774; AT4G16480,AT1G30220,AT2G35740 inositol transporter Os07g0151200 protein (Putative proton myo-inositol transporter),OSJNBa0004N05.8 protein (Os04g0511400 protein) (cDNA clone:J023054A07, full insert sequence) Q7XIZ0,Q7XQ00 Q7XIZ0_ORYSJ,Q7XQ00_ORYSJ Os07g0151200 B1364A02.4 OJ1048_C10.5 OSNPB_070151200,Os04g0511400 OsJ_15435 OSJNBa0004N05.8 OSNPB_040511400 ENOG411DQDQ FLS4,FLS5,FLS1,FLS6 F4KAS1,Q9FFQ4,Q96330,F4K7D5,F4KAS3 FLS4_ARATH,FLS5_ARATH,FLS1_ARATH,FLS6_ARATH,F4KAS3_ARATH Probable flavonol synthase 4 (EC 1.14.11.23),Probable flavonol synthase 5 (EC 1.14.11.23),Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23) (EC 1.14.11.9) (FLS 1),Probable flavonol synthase 6 (EC 1.14.11.23),Flavonol synthase 5 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18467451, ECO:0000269|PubMed:18998159}.,DISRUPTION PHENOTYPE: Accumulation of anthocyanins and glycosylated forms of dihydroflavonols, and drastic reduction of kaempferol, quercitin and favonol glycosides. {ECO:0000269|PubMed:18467451, ECO:0000269|PubMed:18998159, ECO:0000269|PubMed:9770503}. Purple due to anthocyanin accumulation; Low flavonol levels-B. Weisshaar-2009 FUNCTION: Catalyzes the formation of flavonols from dihydroflavonols. It can act on dihydrokaempferol to produce kaempferol, on dihydroquercetin to produce quercitin and on dihydromyricetin to produce myricetin. In vitro catalyzes the oxidation of both enantiomers of naringenin to give both cis- and trans-dihydrokaempferol. {ECO:0000269|PubMed:12126705, ECO:0000269|PubMed:16106293, ECO:0000269|PubMed:16153644, ECO:0000269|PubMed:17719613, ECO:0000269|PubMed:18467451, ECO:0000269|PubMed:18998159, ECO:0000269|PubMed:19433090, ECO:0000269|PubMed:21502189, ECO:0000269|PubMed:9770503}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. 1.14.11.23; 1.14.11.23,1.14.11.23; 1.14.11.9 31901,36964,38282,33456,37093 Probable flavonol synthase 4 (EC 1.14.11.23),Probable flavonol synthase 5 (EC 1.14.11.23),Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23) (EC 1.14.11.9) (FLS 1),Probable flavonol synthase 6 (EC 1.14.11.23),Flavonol synthase 5 flavonol synthase activity [GO:0045431]; metal ion binding [GO:0046872],cytoplasm [GO:0005737]; nucleus [GO:0005634]; flavonol synthase activity [GO:0045431]; L-ascorbic acid binding [GO:0031418]; metal ion binding [GO:0046872]; naringenin 3-dioxygenase activity [GO:0045486]; flavonoid biosynthetic process [GO:0009813]; response to auxin [GO:0009733]; response to karrikin [GO:0080167],flavonol synthase activity [GO:0045431]; metal ion binding [GO:0046872]; flavonoid biosynthetic process [GO:0009813]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in young seedlings. {ECO:0000269|PubMed:18467451}.,TISSUE SPECIFICITY: Expressed in young seedlings (at protein level). Expressed in roots, emerging leaves, shoot-root transition zone, trichomes, flowers and siliques. In cotyledons, expressed mostly on the adaxial side and only in guard cells on the abaxial side. {ECO:0000269|PubMed:10394944, ECO:0000269|PubMed:15821875, ECO:0000269|PubMed:18467451, ECO:0000269|PubMed:21502189}. locus:504954954;,locus:2159542;,locus:504954874;,locus:2160594; AT5G63595,AT5G63600,AT5G08640,AT5G43935 flavonol synthase Os02g0767300 protein (Putative flavonol synthase) (cDNA clone:J023136E04, full insert sequence) Q6Z306 Q6Z306_ORYSJ Os02g0767300 OJ1004_A11.27 OSNPB_020767300 ENOG411DQDP MGN6.13 Q84WU1 Q84WU1_ARATH Nucleotidyltransferase family protein (Uncharacterized protein At5g53770) 59011 Nucleotidyltransferase family protein (Uncharacterized protein At5g53770) nucleotidyltransferase activity [GO:0016779] locus:2164047; AT5G53770 Cid1 family poly A polymerase Os01g0672700 protein (cDNA clone:001-123-E11, full insert sequence),Os01g0672700 protein (Polymerase (DNA directed) sigma-like) B7EXY2,Q5QMQ1 B7EXY2_ORYSJ,Q5QMQ1_ORYSJ Os01g0672700 OSNPB_010672700,P0007F06.20-1 P0485G01.10-1 Os01g0672700 OSNPB_010672700 ENOG411DQDS PCMP-E10 O04590 PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260, mitochondrial 74169 Pentatricopeptide repeat-containing protein At1g62260, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; cytidine to uridine editing [GO:0016554] locus:2018092; AT1G62260 Pentatricopeptide repeat-containing protein At1g62260 Os06g0228900 protein A0A0P0WUN7 A0A0P0WUN7_ORYSJ Os06g0228900 OSNPB_060228900 ENOG411DQDR GN Q42510 GNOM_ARATH ARF guanine-nucleotide exchange factor GNOM (Pattern formation protein EMB30) (Protein EMBRYO DEFECTIVE 30) (Protein MIZU-KUSSEI2) (Protein VASCULAR NETWORK 7) DISRUPTION PHENOTYPE: Lack of morphological features of apical-basal polarity resulting of no root, no true hypocotyl and abnormal shoot apical meristem. Cell wall alterations. Defects in cell adhesion. Aberrant leaf venation. {ECO:0000269|PubMed:10887076, ECO:0000269|PubMed:11090208, ECO:0000269|PubMed:8020095, ECO:0000269|Ref.6}. Mutant embryos exhibit wildtype-like staining patterns for most of the activities analysed: G6PDH 6PGDH GK PGM PGI and ADH. Embryo and seedling defective-D. Shevell; G. Jurgens-1994 FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Acts as the major regulator of endosomal vesicle trafficking but is also involved in the endocytosis process. Could function redundantly with GNL1 in the retrograde Golgi to endoplasmic reticulum trafficking. Regulates vesicle trafficking required for the coordinated polar localization of auxin efflux carriers which in turn determines the direction of auxin flow. Mediates the sorting of PIN1 from endosomal compartments to the basal plasma membrane and the polarization of PIN3 to the bottom side of hypocotyl endodermal cells. Involved in the specification of apical-basal pattern formation in the early embryo and during root formation. Required for correct cell wall organization leading to normal cell adhesion during seedling development. Plays also an essential role in hydrotropism of seedling roots. {ECO:0000269|PubMed:10514379, ECO:0000269|PubMed:11090208, ECO:0000269|PubMed:12553910, ECO:0000269|PubMed:14681187, ECO:0000269|PubMed:18394892, ECO:0000269|PubMed:20036441, ECO:0000269|PubMed:21118984, ECO:0000269|PubMed:21138974, ECO:0000269|PubMed:21569134, ECO:0000269|PubMed:8020095, ECO:0000269|Ref.18, ECO:0000269|Ref.19, ECO:0000269|Ref.6}. R-ATH-421837;R-ATH-6807878;R-ATH-6811434; 162619 ARF guanine-nucleotide exchange factor GNOM (Pattern formation protein EMB30) (Protein EMBRYO DEFECTIVE 30) (Protein MIZU-KUSSEI2) (Protein VASCULAR NETWORK 7) cytosol [GO:0005829]; endosome [GO:0005768]; endosome membrane [GO:0010008]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; identical protein binding [GO:0042802]; protein homodimerization activity [GO:0042803]; basipetal auxin transport [GO:0010540]; cell adhesion [GO:0007155]; cell wall organization [GO:0071555]; cytokinesis by cell plate formation [GO:0000911]; embryo development ending in seed dormancy [GO:0009793]; embryonic pattern specification [GO:0009880]; endocytosis [GO:0006897]; endosome transport via multivesicular body sorting pathway [GO:0032509]; establishment of planar polarity [GO:0001736]; hydrotropism [GO:0010274]; lateral root formation [GO:0010311]; longitudinal axis specification [GO:0009942]; phloem or xylem histogenesis [GO:0010087]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012]; regulation of vesicle targeting, to, from or within Golgi [GO:0048209]; root hair cell differentiation [GO:0048765]; unidimensional cell growth [GO:0009826]; vesicle-mediated transport [GO:0016192] DEVELOPMENTAL STAGE: Continually expressed in both embryogenesis and postembryonic organ development. Strongly expressed in actively dividing or elongating cells but only weakly or not at all in differentiated tissues other than the vasculature. {ECO:0000269|PubMed:14681187}. TISSUE SPECIFICITY: Stems, leaves, flowers, siliques, floral inflorescence and roots. Expressed in the whole plant (at the protein level). {ECO:0000269|PubMed:10715321, ECO:0000269|PubMed:8020095}. locus:2035853; AT1G13980 pattern formation protein Os02g0326600 protein (Fragment),Os03g0666100 protein (Fragment) Q0E1L7,A0A0P0W117 Q0E1L7_ORYSJ,A0A0P0W117_ORYSJ Os02g0326600 Os02g0326600 OSNPB_020326600,Os03g0666100 OSNPB_030666100 ENOG411EMRJ EMB140 A0A1P8B5P4,F4JQ74,F4JQ75 A0A1P8B5P4_ARATH,F4JQ74_ARATH,F4JQ75_ARATH EMBRYO DEFECTIVE 140 Embryo defective; Globular-D. Meinke-2010 81092,92772,92871 EMBRYO DEFECTIVE 140 nucleic acid binding [GO:0003676]; RNA processing [GO:0006396],RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2135892; AT4G24270 HAT NA NA NA NA NA NA NA ENOG411EMRD CMTA3,SR1 Q8GSA7,A0A1P8B262 CMTA3_ARATH,A0A1P8B262_ARATH Calmodulin-binding transcription activator 3 (Ethylene-induced calmodulin-binding protein 1) (EICBP1) (Ethylene-induced calmodulin-binding protein a) (EICBP.a) (Signal-responsive protein 1),Signal responsive 1 Forms chlorotic lesions on leaf lamina. Enhanced resistance to bacterial and fungal pathogens. Necrotic lesions on leaves; Susceptible to fungal and bacterial infection-H. Fromm-2008 FUNCTION: Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. MISCELLANEOUS: The camta3-3D activation tagging mutant plants exhibit compromised systemic acquired resistance (SAR) and enhanced susceptibility to virulent pathogens. {ECO:0000269|PubMed:21900483}. 116111,109420 Calmodulin-binding transcription activator 3 (Ethylene-induced calmodulin-binding protein 1) (EICBP1) (Ethylene-induced calmodulin-binding protein a) (EICBP.a) (Signal-responsive protein 1),Signal responsive 1 nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001077]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; leaf senescence [GO:0010150]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409],nucleus [GO:0005634]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. locus:2060405; AT2G22300 CG-1 domain Anther ethylene-upregulated protein ER1, putative, expressed (Os10g0375600 protein),Os03g0191000 protein Q339A6,Q0DUE4 Q339A6_ORYSJ,Q0DUE4_ORYSJ LOC_Os10g22950 Os10g0375600 OSNPB_100375600,Os03g0191000 OSNPB_030191000 ENOG411EMRE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain OSJNBa0005N02.1 protein (OSJNBa0017B10.18 protein) (Os04g0566100 protein) Q7XQJ0 Q7XQJ0_ORYSJ Os04g0566100 OSJNBa0005N02.1 OSJNBa0017B10.18 OSNPB_040566100 ENOG411EMR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ArfGap NA NA NA NA NA NA NA ENOG411EMR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO NA NA NA NA NA NA NA ENOG411EMR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO NA NA NA NA NA NA NA ENOG411EMR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO Os07g0511900 protein (Fragment) A0A0P0X6B9 A0A0P0X6B9_ORYSJ Os07g0511900 OSNPB_070511900 ENOG411DZ67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0286146 protein (Fragment) A0A0P0WVA6 A0A0P0WVA6_ORYSJ Os06g0286146 OSNPB_060286146 ENOG411EFD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger NA NA NA NA NA NA NA ENOG411EAED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EAEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411DVIV PCMP-E54 Q9ZVG8 PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial 63587 Pentatricopeptide repeat-containing protein At1g26900, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2202790; AT1G26900 Pentatricopeptide repeat-containing protein Os08g0494350 protein A0A0P0XH62 A0A0P0XH62_ORYSJ Os08g0494350 OSNPB_080494350 ENOG411E9D1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beta-lactamase NA NA NA NA NA NA NA ENOG411E9D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methylenetetrahydrofolate reductase NA NA NA NA NA NA NA ENOG411E9DZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAR domain NA NA NA NA NA NA NA ENOG411E9DX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411E9DY DTX3,DTX4,DTX2 Q9SIA4,Q9SIA3,Q8GXM8,Q8S8A9,A0A1P8B0Y4 DTX3_ARATH,DTX4_ARATH,DTX2_ARATH,Q8S8A9_ARATH,A0A1P8B0Y4_ARATH Protein DETOXIFICATION 3 (AtDTX3) (Multidrug and toxic compound extrusion protein 3) (MATE protein 3),Protein DETOXIFICATION 4 (AtDTX4) (Multidrug and toxic compound extrusion protein 4) (MATE protein 4),Protein DETOXIFICATION 2 (AtDTX2) (Multidrug and toxic compound extrusion protein 2) (MATE protein 2),MATE efflux family protein (Predicted protein),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) R-ATH-425366; 51468,51489,51570,18905,50896 Protein DETOXIFICATION 3 (AtDTX3) (Multidrug and toxic compound extrusion protein 3) (MATE protein 3),Protein DETOXIFICATION 4 (AtDTX4) (Multidrug and toxic compound extrusion protein 4) (MATE protein 4),Protein DETOXIFICATION 2 (AtDTX2) (Multidrug and toxic compound extrusion protein 2) (MATE protein 2),MATE efflux family protein (Predicted protein),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2050180;,locus:2050225;,locus:2050185;,locus:2827476; AT2G04050,AT2G04070,AT2G04080,AT2G04066 Mate efflux family protein NA NA NA NA NA NA NA ENOG411E9DR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os05g0467400 protein (Fragment),Os05g0467501 protein (Fragment) A0A0P0WND8,A0A0P0WNE8 A0A0P0WND8_ORYSJ,A0A0P0WNE8_ORYSJ Os05g0467400 OSNPB_050467400,Os05g0467501 OSNPB_050467501 ENOG411E9DS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411E9DP ABCB17,ABCB22,ABCB18,ABCB16 Q9LSJ6,Q9LSJ2,Q9LSJ5,Q9LSJ8 AB17B_ARATH,AB22B_ARATH,AB18B_ARATH,AB16B_ARATH ABC transporter B family member 17 (ABC transporter ABCB.17) (AtABCB17) (P-glycoprotein 17) (Putative multidrug resistance protein 19),ABC transporter B family member 22 (ABC transporter ABCB.22) (AtABCB22) (P-glycoprotein 22) (Putative multidrug resistance protein 21),ABC transporter B family member 18 (ABC transporter ABCB.18) (AtABCB18) (P-glycoprotein 18) (Putative multidrug resistance protein 20),ABC transporter B family member 16 (ABC transporter ABCB.16) (AtABCB16) (Multidrug resistance protein 18) (P-glycoprotein 16) ARA:AT3G28380-MONOMER;,ARA:AT3G28415-MONOMER;,ARA:AT3G28390-MONOMER;,ARA:AT3G28360-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 136062,134940,134303,135916 ABC transporter B family member 17 (ABC transporter ABCB.17) (AtABCB17) (P-glycoprotein 17) (Putative multidrug resistance protein 19),ABC transporter B family member 22 (ABC transporter ABCB.22) (AtABCB22) (P-glycoprotein 22) (Putative multidrug resistance protein 21),ABC transporter B family member 18 (ABC transporter ABCB.18) (AtABCB18) (P-glycoprotein 18) (Putative multidrug resistance protein 20),ABC transporter B family member 16 (ABC transporter ABCB.16) (AtABCB16) (Multidrug resistance protein 18) (P-glycoprotein 16) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2088927;,locus:504955759;,locus:2088942;,locus:2088912; AT3G28380,AT3G28415,AT3G28390,AT3G28360 ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411E9DQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411E9DV NAI2 Q9LSB4,A0A1I9LQE5,A0A1I9LQE6,A0A1I9LQE4 NAI2_ARATH,A0A1I9LQE5_ARATH,A0A1I9LQE6_ARATH,A0A1I9LQE4_ARATH TSA1-like protein (Protein NAI2),DNA topoisomerase-like protein DISRUPTION PHENOTYPE: Loss of ER bodies accumulation in all parts of the seedling and alteration of PYK10 localization. {ECO:0000269|PubMed:18780803}. Mutants lack ER bodies. Complete loss of ER body formation-M. Nishiura-2008 FUNCTION: Responsible for the ER body formation. Regulates the number and shape of the ER bodies and the accumulation of PYK10 in ER bodies, but is not involved in the expression of PYK10. {ECO:0000269|PubMed:18780803, ECO:0000269|PubMed:19847124, ECO:0000269|PubMed:23166355}. MISCELLANEOUS: 'Nai' means 'nothing' in Japanese. Homologous proteins are found only in Brassicales plants (PubMed:18780803). {ECO:0000305|PubMed:18780803}. 85016,63186,68378,67442 TSA1-like protein (Protein NAI2),DNA topoisomerase-like protein endoplasmic reticulum lumen [GO:0005788]; ER body [GO:0010168]; membrane [GO:0016020]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; ER body organization [GO:0080119]; response to salt stress [GO:0009651],isomerase activity [GO:0016853] TISSUE SPECIFICITY: Expressed in roots. Detected in shoot apex. {ECO:0000269|PubMed:15964904}. locus:2093930; AT3G15950 NA NA NA NA NA NA NA NA ENOG411E9DW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRO1 Os10g0495466 protein A0A0P0XW28 A0A0P0XW28_ORYSJ Os10g0495466 OSNPB_100495466 ENOG411E9DT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes chitin and may play a role in defense against fungal pathogens containing chitin Chitinase 7 (EC 3.2.1.14) (Class I chitinase d) (OsChia1d) (Pathogenesis related (PR)-3 chitinase 7) Q7Y1Z1 CHI7_ORYSJ Cht7 PC Os05g0399700 LOC_Os05g33150 OSJNBa0035J16.1 P0605G01.16 FUNCTION: Hydrolyzes chitin and may play a role in defense against fungal pathogens containing chitin. {ECO:0000269|PubMed:10890535}. ENOG411E9DU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9DJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: integrator complex subunit 2 NA NA NA NA NA NA NA ENOG411E9DK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0976900 protein (Fragment) A0A0P0VDI8 A0A0P0VDI8_ORYSJ Os01g0976900 OSNPB_010976900 ENOG411E9DN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Ent-cassadiene hydroxylase (EC 1.14.14.69) (Cytochrome P450 71Z7),Ent-isokaurene C2-hydroxylase (EC 1.14.13.143) (Cytochrome P450 71Z6),Os02g0529800 protein (Putative cytochrome P450),Os07g0217600 protein (Putative cytochrome P450 71D7) (cDNA clone:J013050H07, full insert sequence),Cytochrome P450 family protein, expressed (Os10g0439800 protein),Cytochrome P450 family protein, expressed (Os10g0439924 protein) (Os10g0440000 protein) (cDNA clone:J013112H19, full insert sequence),Os07g0218900 protein,Os02g0570500 protein (Fragment),Os10g0439666 protein,Os10g0439700 protein Q6YV88,A3A871,Q6H763,Q7X6T8,Q7XE29,Q7XE28,A0A0P0X402,A0A0P0VKR9,A0A0P0XVK5,A0A0P0XVA7 C71Z7_ORYSJ,C71Z6_ORYSJ,Q6H763_ORYSJ,Q7X6T8_ORYSJ,Q7XE29_ORYSJ,Q7XE28_ORYSJ,A0A0P0X402_ORYSJ,A0A0P0VKR9_ORYSJ,A0A0P0XVK5_ORYSJ,A0A0P0XVA7_ORYSJ CYP71Z7 Os02g0570700 LOC_Os02g36190 OsJ_07207 OSJNBa0008E01.37 P0689H05.7,CYP71Z6 Os02g0570500 LOC_Os02g36150 OsJ_07206 OSJNBa0008E01.28,Os02g0529800 OSNPB_020529800 P0476H10.26,OJ1080_F08.127 Os07g0217600 OSJNBa0031C24.111 OSNPB_070217600,Os10g0439800 LOC_Os10g30390 OsJ_31662 OSNPB_100439800,Os10g0439924 LOC_Os10g30410 Os10g0440000 OsJ_31663 OSNPB_100439924,Os07g0218900 OSNPB_070218900,Os02g0570500 OSNPB_020570500,Os10g0439666 OSNPB_100439666,Os10g0439700 OSNPB_100439700 FUNCTION: Enzyme of the diterpenoid metabolism involved in the biosynthesis of antibacterial oryzalides such as phytocassane (PubMed:21985968). Catalyzes the hydroxylation of ent-cassa-12,15-diene to form ent-3beta-hydroxycassa-12,15-dien-2-one (PubMed:25758958). {ECO:0000269|PubMed:21985968, ECO:0000269|PubMed:25758958}.,FUNCTION: Enzyme of the diterpenoid metabolism involved in the biosynthesis of antibacterial oryzalides such as phytocassane. {ECO:0000269|PubMed:21985968}. ENOG411E9DM LSH9 Q9SN52 LSH9_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 (Protein ORGAN BOUNDARY 9) FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. 21745 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 (Protein ORGAN BOUNDARY 9) nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] locus:2124067; AT4G18610 Protein of unknown function (DUF640) NA NA NA NA NA NA NA ENOG411E9DA Q4PS45 Q4PS45_ARATH At1g14260 (RING domain protein) (RING/FYVE/PHD zinc finger superfamily protein) 29540 At1g14260 (RING domain protein) (RING/FYVE/PHD zinc finger superfamily protein) integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270] locus:2012477; AT1G14260 Protein of unknown function (DUF3675) NA NA NA NA NA NA NA ENOG411E9DE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os03g0621400 protein (TPR Domain containing protein, expressed) (cDNA, clone: J065146D10, full insert sequence),Os08g0325400 protein Q10GN0,A0A0N7KPN3 Q10GN0_ORYSJ,A0A0N7KPN3_ORYSJ Os03g0621400 LOC_Os03g42350 OsJ_11762 OSNPB_030621400,Os08g0325400 OSNPB_080325400 ENOG411DS7Y MS3 Q0WNZ5 METE3_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3, chloroplastic (EC 2.1.1.14) (Cobalamin-independent methionine synthase 3) (AtMS3) FUNCTION: Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. {ECO:0000269|PubMed:15024005}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetE route): step 1/1. ARA:AT5G20980-MONOMER; 2.1.1.14 90594 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3, chloroplastic (EC 2.1.1.14) (Cobalamin-independent methionine synthase 3) (AtMS3) chloroplast [GO:0009507]; cytosol [GO:0005829]; extracellular region [GO:0005576]; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [GO:0003871]; methionine synthase activity [GO:0008705]; zinc ion binding [GO:0008270]; homocysteine metabolic process [GO:0050667] TISSUE SPECIFICITY: Expressed in seeds. {ECO:0000269|PubMed:15024005}. locus:2147147; AT5G20980 methionine synthase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 (EC 2.1.1.14) (Cobalamin-independent methionine synthase 1),5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 (EC 2.1.1.14) (Cobalamin-independent methionine synthase 2),Os12g0623900 protein (Fragment) Q2QLY5,Q2QLY4,A0A0P0YCK4 METE1_ORYSJ,METE2_ORYSJ,A0A0P0YCK4_ORYSJ Os12g0623900 LOC_Os12g42876 OsJ_36926,Os12g0624000 LOC_Os12g42884 OsJ_36927,Os12g0623900 OSNPB_120623900 FUNCTION: Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. {ECO:0000250}. ENOG411ED2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411ED2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fructose-1-6-bisphosphatase NA NA NA NA NA NA NA ENOG411ED2F PER58 P59120 PER58_ARATH Peroxidase 58 (Atperox P58) (EC 1.11.1.7) (ATP42) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G19880-MONOMER; 1.11.1.7 35429 Peroxidase 58 (Atperox P58) (EC 1.11.1.7) (ATP42) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2147630; AT5G19880 Peroxidase NA NA NA NA NA NA NA ENOG411ED2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0153150 protein (Fragment),Os11g0636050 protein (Fragment),Os07g0153150 protein A0A0P0X2C8,A0A0N7KT92,A0A0P0X2L4 A0A0P0X2C8_ORYSJ,A0A0N7KT92_ORYSJ,A0A0P0X2L4_ORYSJ Os07g0153150 OSNPB_070153150,Os11g0636050 OSNPB_110636050 ENOG411ED2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Probable aquaporin PIP2-6 (OsPIP2;6) (Plasma membrane intrinsic protein 2-6),Os04g0233400 protein (Fragment) Q7XLR1,A0A0P0W7K8 PIP26_ORYSJ,A0A0P0W7K8_ORYSJ PIP2-6 Os04g0233400 LOC_Os04g16450 OSJNBb0093G06.10,Os04g0233400 OSNPB_040233400 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411ED2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein sorting 54 homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411ED2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-5 cytosine-specific DNA methylase NA NA NA NA NA NA NA ENOG411ED2W Q9LTC3,Q9FZI7 FB179_ARATH,FB313_ARATH Putative F-box protein At3g23260,Probable F-box protein At1g27490 41908,19574 Putative F-box protein At3g23260,Probable F-box protein At1g27490 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2086243;,locus:2015934; AT3G23260,AT1G27490 at3g23260 (e NA NA NA NA NA NA NA ENOG411ED2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED2S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411ED25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0260200 protein,Os09g0259500 protein,Os09g0259950 protein,Os09g0260300 protein Q6K1V3,A0A0N7KQF8,A0A0P0XJ13,A0A0N7KQF9 Q6K1V3_ORYSJ,A0A0N7KQF8_ORYSJ,A0A0P0XJ13_ORYSJ,A0A0N7KQF9_ORYSJ Os09g0260200 Os09g0260200 B1279D09.29 OSNPB_090260200,Os09g0259500 OSNPB_090259500,Os09g0259950 OSNPB_090259950,Os09g0260300 OSNPB_090260300 ENOG411ED24 Q9SS86,O22719 LHTL4_ARATH,LHTL3_ARATH Lysine histidine transporter-like 4,Lysine histidine transporter-like 3 FUNCTION: Amino acid transporter. {ECO:0000250}. 50736,50326 Lysine histidine transporter-like 4,Lysine histidine transporter-like 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; L-alanine transmembrane transporter activity [GO:0015180]; L-aspartate transmembrane transporter activity [GO:0015183]; L-glutamate transmembrane transporter activity [GO:0005313]; L-alanine transport [GO:0015808]; L-aspartate transmembrane transport [GO:0089712]; L-glutamate import across plasma membrane [GO:0098712],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2082354;,locus:2008435; AT3G01760,AT1G61270 Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411ED27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA dependent RNA polymerase NA NA NA NA NA NA NA ENOG411ED26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411ED21 O64859,F4IT63 O64859_ARATH,F4IT63_ARATH At2g44240/F4I1.5 (Expressed protein) (NEP-interacting protein (DUF239)),NEP-interacting protein (DUF239) 44711,45968 At2g44240/F4I1.5 (Expressed protein) (NEP-interacting protein (DUF239)),NEP-interacting protein (DUF239) response to oxidative stress [GO:0006979] locus:2050579;,locus:2050528; AT2G44240,AT2G44220 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411ED20 AIG2C Q9MBH1 AIG2C_ARATH Protein AIG2 C (EC 2.3.2.-) (Avirulence-induced gene 2 protein C) (Putative gamma-glutamylcyclotransferase) FUNCTION: Putative gamma-glutamylcyclotransferase. {ECO:0000250|UniProtKB:O75223}. 2.3.2.- 18619 Protein AIG2 C (EC 2.3.2.-) (Avirulence-induced gene 2 protein C) (Putative gamma-glutamylcyclotransferase) transferase activity, transferring acyl groups [GO:0016746] DEVELOPMENTAL STAGE: Expressed constitutively during the life cycle. {ECO:0000305|PubMed:18214976}. TISSUE SPECIFICITY: Expressed in floral organs, leaves, stems and roots. {ECO:0000305|PubMed:18214976}. locus:2086997; AT3G28950 AIG2-like family NA NA NA NA NA NA NA ENOG411ED23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol-specific phospholipase C Y domain Phosphoinositide phospholipase C (EC 3.1.4.11),Phosphoinositide phospholipase C (EC 3.1.4.11) (Fragment) Q6Z3Y9,A0A0P0XAL9 Q6Z3Y9_ORYSJ,A0A0P0XAL9_ORYSJ Os07g0694000 Os07g0694000 OsJ_25698 OSNPB_070694000 P0627E10.3,Os07g0694000 OSNPB_070694000 ENOG411ED29 HVA22G Q9LR09,A0A1P8APN0 HA22G_ARATH,A0A1P8APN0_ARATH Putative HVA22-like protein g (AtHVA22g),HVA22-like protein 20857,24287 Putative HVA22-like protein g (AtHVA22g),HVA22-like protein membrane [GO:0016020] locus:2005699; AT1G75700 TB2/DP1 HVA22 family NA NA NA NA NA NA NA ENOG411ED28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat OSJNBb0089K24.8 protein (Os04g0122000 protein) (cDNA clone:J013095E04, full insert sequence),Os04g0119800 protein (Fragment),Os04g0122000 protein (Fragment) Q7XXG2,Q0JFA6,A0A0P0W6C1 Q7XXG2_ORYSJ,Q0JFA6_ORYSJ,A0A0P0W6C1_ORYSJ Os04g0122000 OSJNBb0089K24.8 OSNPB_040122000,Os04g0119800 Os04g0119800 OSNPB_040119800,Os04g0122000 OSNPB_040122000 ENOG411DS7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os06g0311000 protein A0A0P0WVV1 A0A0P0WVV1_ORYSJ Os06g0311000 OSNPB_060311000 ENOG411E3SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 9 NA NA NA NA NA NA NA ENOG411E3SZ MUB4 Q9LSD8 MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 (AtMUB4) (Membrane-anchored ub-fold protein 4) FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. MISCELLANEOUS: Heat stable and remains soluble at temperatures exceeding 90 degrees Celsius. 13452 Membrane-anchored ubiquitin-fold protein 4 (AtMUB4) (Membrane-anchored ub-fold protein 4) plasma membrane [GO:0005886] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16831869}. locus:2091975; AT3G26980 membrane-anchored ubiquitin-fold protein Membrane-anchored ubiquitin-fold protein 4 (Membrane-anchored ub-fold protein 4) (OsMUB4),Membrane-anchored ubiquitin-fold protein Q7XRU4,B7E6A7 MUB4_ORYSJ,B7E6A7_ORYSJ MUB4 Os04g0393300 LOC_Os04g32270 OsJ_14610 OSJNBa0055C08.14,Os04g0393300 OSNPB_040393300 FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. {ECO:0000250|UniProtKB:Q9LSD8}.,FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. {ECO:0000256|PIRNR:PIRNR032572}. ENOG411EAXW A0A1P8AVZ3,F4HPY1 A0A1P8AVZ3_ARATH,F4HPY1_ARATH SMAD/FHA domain-containing protein 52015,59129 SMAD/FHA domain-containing protein locus:2036621; AT1G60700 domain-containing protein NA NA NA NA NA NA NA ENOG411EAXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAXP F4HUG9 F4HUG9_ARATH Ribonuclease T2 family protein 28186 Ribonuclease T2 family protein ribonuclease T2 activity [GO:0033897]; RNA binding [GO:0003723]; response to salt stress [GO:0009651] locus:2035865; AT1G14210 ribonuclease T2 family protein NA NA NA NA NA NA NA ENOG411EAXZ TRI Q9ZW16 TRNHA_ARATH Tropinone reductase homolog At2g29330 (EC 1.1.1.-) FUNCTION: Reductase active only on small flexible lipophilic carbonyls. No activity with cyclic monoterpenes, tropinone, nitrogen-containing tropinone analogs, tropine or pseudotropine as substrate. {ECO:0000269|PubMed:24583623}. ARA:AT2G29330-MONOMER; 1.1.1.- 27662 Tropinone reductase homolog At2g29330 (EC 1.1.1.-) oxidoreductase activity [GO:0016491] locus:2042992; AT2G29330 KR domain NA NA NA NA NA NA NA ENOG411EAXX IAN12,IAN13 Q9T0F3,Q9T0F4,A0A1P8B8D5,A0A1P8B5B4 IAN12_ARATH,IAN13_ARATH,A0A1P8B8D5_ARATH,A0A1P8B5B4_ARATH Immune-associated nucleotide-binding protein 12 (AtIAN12) (AIG1-like protein),Immune-associated nucleotide-binding protein 13 (AtIAN13) (AIG1-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein 44902,38319,49105,31593 Immune-associated nucleotide-binding protein 12 (AtIAN12) (AIG1-like protein),Immune-associated nucleotide-binding protein 13 (AtIAN13) (AIG1-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein vacuolar membrane [GO:0005774]; GTP binding [GO:0005525],GTP binding [GO:0005525],GTP binding [GO:0005525]; hydrolase activity [GO:0016787] DEVELOPMENTAL STAGE: Highest expression levels in young seedlings and much lower expression abundance in the later developmental stages. {ECO:0000305|PubMed:17723251}.,DEVELOPMENTAL STAGE: Expressed at the late stage of silique development. {ECO:0000305|PubMed:17723251}. TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000305|PubMed:17723251}. locus:2140558;,locus:2140568; AT4G09940,AT4G09950 AIG1 family NA NA NA NA NA NA NA ENOG411EAXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbon-nitrogen hydrolase NA NA NA NA NA NA NA ENOG411E3JT PLA2-BETA,PLA2-DELTA,PLA2-GAMMA Q8GZB4,Q8GV50,Q9M0D7,A0A1P8B2X2,F4ITF6 PLA2B_ARATH,PLA2D_ARATH,PLA2C_ARATH,A0A1P8B2X2_ARATH,F4ITF6_ARATH Phospholipase A2-beta (EC 3.1.1.4) (Secretory phospholipase A2-beta) (AtsPLA2-beta),Phospholipase A2-delta (EC 3.1.1.4) (Secretory phospholipase A2-delta) (AtsPLA2-delta),Phospholipase A2-gamma (EC 3.1.1.4) (Secretory phospholipase A2-gamma) (AtsPLA2-gamma),Phospholipase A2-beta DISRUPTION PHENOTYPE: RNAi mutant exhibits delayed light-induced stomatal opening. {ECO:0000269|PubMed:18725378}. WT phenotype under short day conditions. Slow-growing under long day conditions. Slower light-induced stomatal opening. Short inflorescence stems and petioles-S. Ryu-2003 FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. Regulates the process of cell elongation and plays important roles in shoot gravitropism by mediating auxin-induced cell elongation. Involved in stomatal opening in response to light. Plays a role in pollen development and germination and tube growth. {ECO:0000269|PubMed:12953106, ECO:0000269|PubMed:18725378, ECO:0000269|PubMed:21278126}.,FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. Plays a role in pollen development and germination and tube growth. {ECO:0000269|PubMed:21278126}.,FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. Plays a role in pollen development and germination and tube growth. {ECO:0000269|PubMed:14550557, ECO:0000269|PubMed:21278126}. MISCELLANEOUS: The enzyme has a preference towards palmitoyl acyl chain over linoleoyl acyl chain. It also has a slight preference for phosphatidylethanolamine over phosphatidylcholine.,MISCELLANEOUS: The enzyme has a slight preference for phosphatidylethanolamine over phosphatidylcholine. ARA:AT2G19690-MONOMER;,ARA:AT4G29470-MONOMER;,ARA:AT4G29460-MONOMER;MetaCyc:AT4G29460-MONOMER; 3.1.1.4; 3.1.1.4 16286,20617,20038,11433,16515 Phospholipase A2-beta (EC 3.1.1.4) (Secretory phospholipase A2-beta) (AtsPLA2-beta),Phospholipase A2-delta (EC 3.1.1.4) (Secretory phospholipase A2-delta) (AtsPLA2-delta),Phospholipase A2-gamma (EC 3.1.1.4) (Secretory phospholipase A2-gamma) (AtsPLA2-gamma),Phospholipase A2-beta endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; calcium ion binding [GO:0005509]; phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; gravitropism [GO:0009630]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; positive regulation of cell growth [GO:0030307]; response to auxin [GO:0009733],endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; calcium ion binding [GO:0005509]; phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644]; pollen development [GO:0009555]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860],endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; calcium ion binding [GO:0005509]; phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644]; pollen development [GO:0009555]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860],extracellular region [GO:0005576]; calcium ion binding [GO:0005509]; phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644],endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; calcium ion binding [GO:0005509]; phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644]; pollen development [GO:0009555]; regulation of stomatal movement [GO:0010119]; response to light stimulus [GO:0009416] DEVELOPMENTAL STAGE: Expressed in the actively growing young stages of Arabidopsis seedlings. When plants grew, however, expression was evident only in cotyledons, primary leaves, and hypocotyls. The activity decreased in the secondary leaves, being detectable only in vascular tissues. In the roots as well, expression was localized mostly in vascular tissues. Expression becomes highly active when floral shoots bolted, especially in the young or actively growing tissues of inflorescence stems. Continuously expressed during pollen development. {ECO:0000269|PubMed:12953106, ECO:0000269|PubMed:21278126}.,DEVELOPMENTAL STAGE: Expressed during pollen germination and tube growth. {ECO:0000269|PubMed:21278126}. TISSUE SPECIFICITY: Ubiquitous but expressed at a low level. Detected in vascular tissues and in the guard cells. Predominantly detected in pollen. {ECO:0000269|PubMed:12953106, ECO:0000269|PubMed:15748654, ECO:0000269|PubMed:18725378, ECO:0000269|PubMed:21278126}.,TISSUE SPECIFICITY: Specifically expressed in flowers but at a low level. Detected specifically in the pollen. {ECO:0000269|PubMed:15748654, ECO:0000269|PubMed:21278126}.,TISSUE SPECIFICITY: Strongly expressed in mature flowers but weakly expressed in other tissues. Detected in buds, open flowers and in pollen. {ECO:0000269|PubMed:14550557, ECO:0000269|PubMed:15748654, ECO:0000269|PubMed:21278126}. locus:2118359;,locus:2118354;,locus:2051940; AT2G19690,AT4G29470,AT4G29460 Phospholipase A2 Probable phospholipase A2 homolog 1 (EC 3.1.1.4) Q9XG80 PLA21_ORYSJ PLA2-I Os02g0831700 LOC_Os02g58500 OJ1149_C12.15 OsJ_08999 FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. {ECO:0000250}. ENOG411EFUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor NA NA NA NA NA NA NA ENOG411EFUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EFUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Myblike DNAbinding domain containing protein NA NA NA NA NA NA NA ENOG411EFUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) NA NA NA NA NA NA NA ENOG411EFUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0239200 protein (Fragment),Os12g0106700 protein (Fragment) A0A0P0X4A9,A0A0P0Y6D3 A0A0P0X4A9_ORYSJ,A0A0P0Y6D3_ORYSJ Os07g0239200 OSNPB_070239200,Os12g0106700 OSNPB_120106700 ENOG411EFUG SMR8 Q9SAD3 SMR8_ARATH Cyclin-dependent protein kinase inhibitor SMR8 (Protein SIAMESE-RELATED 8) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250|UniProtKB:Q9LZ78}. 12166 Cyclin-dependent protein kinase inhibitor SMR8 (Protein SIAMESE-RELATED 8) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] TISSUE SPECIFICITY: Expressed in the root vascular tissue (PubMed:24399300). {ECO:0000269|PubMed:24399300}. locus:2196459; AT1G10690 NA NA NA NA NA NA NA NA ENOG411EFUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ring finger protein NA NA NA NA NA NA NA ENOG411EFUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Paired amphipathic helix repeat NA NA NA NA NA NA NA ENOG411EFUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3455) NA NA NA NA NA NA NA ENOG411EFUC Q9FX47,B3H587 Q9FX47_ARATH,B3H587_ARATH At1g73550 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein T9L24.29),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 14607,16510 At1g73550 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein T9L24.29),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein integral component of membrane [GO:0016021] locus:2035057; AT1G73550 NA NA NA NA NA NA NA NA ENOG411EFUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EFUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif NA NA NA NA NA NA NA ENOG411EFUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0607100 protein A0A0P0X8G2 A0A0P0X8G2_ORYSJ Os07g0607100 OSNPB_070607100 ENOG411EFUY T4D2.10,F8J2_220,F8J2_240 Q9SCQ3,Q9LF87,Q9LF85,B3H4Y0,A0A1I9LPY2,B3H6K7 Q9SCQ3_ARATH,Q9LF87_ARATH,Q9LF85_ARATH,B3H4Y0_ARATH,A0A1I9LPY2_ARATH,B3H6K7_ARATH D-galactoside/L-rhamnose binding SUEL lectin protein (Galactose-binding lectin family protein) (Uncharacterized protein T4D2.10),D-galactoside/L-rhamnose binding SUEL lectin protein (Uncharacterized protein F8J2_220),Putative membrane lipoprotein (Uncharacterized protein F8J2_240),D-galactoside/L-rhamnose binding SUEL lectin protein 16991,15550,11798,17907,21871,18380 D-galactoside/L-rhamnose binding SUEL lectin protein (Galactose-binding lectin family protein) (Uncharacterized protein T4D2.10),D-galactoside/L-rhamnose binding SUEL lectin protein (Uncharacterized protein F8J2_220),Putative membrane lipoprotein (Uncharacterized protein F8J2_240),D-galactoside/L-rhamnose binding SUEL lectin protein carbohydrate binding [GO:0030246],vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246],integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246] locus:2101963;,locus:2085186;,locus:2085216;,locus:4515103256;,locus:4515103257; AT3G53080,AT3G53050,AT3G53070,AT3G53065,AT3G53075 Galactose binding lectin domain NA NA NA NA NA NA NA ENOG411EFUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os01g0278683 protein A0A0P0V1N3 A0A0P0V1N3_ORYSJ Os01g0278683 OSNPB_010278683 ENOG411EFUT Q9C8B5,A0A1I9LRJ5 Q9C8B5_ARATH,A0A1I9LRJ5_ARATH NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (Uncharacterized protein F10O5.6),NAC (No apical meristem) domain transcriptional regulator superfamily protein 20305,10016 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (Uncharacterized protein F10O5.6),NAC (No apical meristem) domain transcriptional regulator superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2007631; AT1G35890 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EFUU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: monooxygenase NA NA NA NA NA NA NA ENOG411EFUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFUQ SMR7 Q9LVX6 SMR7_ARATH Cyclin-dependent protein kinase inhibitor SMR7 (Protein SIAMESE-RELATED 7) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle (PubMed:26546445). Acts as a potent cell cycle inhibitor, regulating a hydroxyurea-dependent checkpoint in leaves (PubMed:24399300). {ECO:0000269|PubMed:24399300, ECO:0000269|PubMed:26546445}. 11200 Cyclin-dependent protein kinase inhibitor SMR7 (Protein SIAMESE-RELATED 7) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049]; cellular response to DNA damage stimulus [GO:0006974] TISSUE SPECIFICITY: Expressed in root meristems after induction. {ECO:0000269|PubMed:24399300}. locus:2089169; AT3G27630 NA NA NA NA NA NA NA NA ENOG411EFU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os03g0789900 protein (Fragment),Expressed protein (Os03g0794100 protein),Expressed protein (Os03g0800400 protein) (cDNA clone:J023097A10, full insert sequence),Os01g0686500 protein (Fragment),Expressed protein (Os03g0753500 protein) (cDNA clone:001-013-F09, full insert sequence) (cDNA clone:J023041E14, full insert sequence),Os09g0522800 protein (cDNA clone:J023065L17, full insert sequence),Os03g0755300 protein,Os03g0790200 protein,Os03g0753400 protein,Os03g0755450 protein,Os05g0297300 protein Q0DMW1,Q852L6,Q10BZ5,Q0JKA7,Q8LLN5,Q651P0,A0A0P0W398,A0A0P0W3Z7,A0A0P0W340,A0A0P0W439,A0A0P0WKA6 Q0DMW1_ORYSJ,Q852L6_ORYSJ,Q10BZ5_ORYSJ,Q0JKA7_ORYSJ,Q8LLN5_ORYSJ,Q651P0_ORYSJ,A0A0P0W398_ORYSJ,A0A0P0W3Z7_ORYSJ,A0A0P0W340_ORYSJ,A0A0P0W439_ORYSJ,A0A0P0WKA6_ORYSJ Os03g0789900 OSNPB_030789900,OSJNBb0060J21.6 Os03g0794100 LOC_Os03g58000 OSNPB_030794100,Os03g0800400 LOC_Os03g58610 Os03g0800400 OsJ_12980 OSNPB_030800400,Os01g0686500 Os01g0686500 OSNPB_010686500,OSJNBa0032E21.01 OJ1112_G08.17 LOC_Os03g54200 Os03g0753500 OSNPB_030753500,Os09g0522800 Os09g0522800 OsJ_30050 OSJNBa0047P18.2 OSNPB_090522800,Os03g0755300 OSNPB_030755300,Os03g0790200 OSNPB_030790200,Os03g0753400 OSNPB_030753400,Os03g0755450 OSNPB_030755450,Os05g0297300 OSNPB_050297300 ENOG411EFU9 Q8L443 Q8L443_ARATH At1g22470/F12K8_18 16360 At1g22470/F12K8_18 locus:2009462; AT1G22470 NA NA NA NA NA NA NA NA ENOG411EFU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFU4 HIPP14,HIPP13 Q9LTE1,Q9LTE2,Q9LTE0,A0A1P8BDZ5,A0A1P8BG12 HIP14_ARATH,HIP13_ARATH,Q9LTE0_ARATH,A0A1P8BDZ5_ARATH,A0A1P8BG12_ARATH Heavy metal-associated isoprenylated plant protein 14 (AtHIP14),Heavy metal-associated isoprenylated plant protein 13 (AtHIP13),Copper transport protein family (Heavy-metal-associated protein-related),Copper transport protein family,Heavy metal transport/detoxification superfamily protein FUNCTION: Probable heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 14078,15483,12016,10223,11576 Heavy metal-associated isoprenylated plant protein 14 (AtHIP14),Heavy metal-associated isoprenylated plant protein 13 (AtHIP13),Copper transport protein family (Heavy-metal-associated protein-related),Copper transport protein family,Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2149614;,locus:2149594;,locus:2149629; AT5G52760,AT5G52750,AT5G52770 Heavy-metal-associated domain-containing protein NA NA NA NA NA NA NA ENOG411EFU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os07g0268000 protein,Os07g0269800 protein A0A0P0X4K4,A0A0P0X4I7 A0A0P0X4K4_ORYSJ,A0A0P0X4I7_ORYSJ Os07g0268000 OSNPB_070268000,Os07g0269800 OSNPB_070269800 ENOG411EFU1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EMH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase SPL11 NA NA NA NA NA NA NA ENOG411EMGD HUB2 A0A1P8APW2,F4I079 A0A1P8APW2_ARATH,F4I079_ARATH Histone mono-ubiquitination 2 The chlorophyll content index of the double mutant did not differ from the single mutants and the germination percentage of freshly harvested seeds was slightly higher than that of the single mutants.,Same phenotypes as the single mutants.,Mutant plants were smaller with pale green laminas and irregular blade surface and their inflorescence stems were thinner than those of the Col stems.,Reduced seed dormancy phenotype.,Reduction in the rosette biomass to 43 and 42% of fresh and dry weight of Col respectively and weak but significant (P < 0.001) inhibition of the root growth when the kinetic slopes of hub2-1 and Col were compared.,No new leaf and flower phenotypes were observed compared to the single mutant parents and the biomass of the double mutant lines fell statistically in the same group as that of both single parents.,The flowering of hub2-2 mutants is accelerated compared to wild type plants under long days and short days. In addition the plants are small and have pale green leaves. Histone2B ubiquitination is lost in hub2-2 mutants. Dwarf; Pale green leaves; Irregular leaf blade surface; Thin inflorescence stems; Reduced rosette biomass; Slightly shorter roots; Increased ploidy levels in leaves-M. Van Lijsebettens-2007 101045,103220 Histone mono-ubiquitination 2 metal ion binding [GO:0046872] AT1G55250 RING NA NA NA NA NA NA NA ENOG411EKNZ RVE2 F4K5X6 RVE2_ARATH Protein REVEILLE 2 (MYB family transcription factor Circadian 1) DISRUPTION PHENOTYPE: No effect on the regulation of core clock associated genes or on the hypocotyl length, but hypersensitivity to freezing stress and slightly earlier-flowering phenotype. Rve1 and rve2 double mutant has no alteration in the period or phase of the clock. Rve1, rve2 and rve7 triple mutant has no alteration in the period or phase of the clock. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23371945}. slightly earlier flowering under long day conditions. increased FT expression under long day conditions.,Under FRc conditions the length mutant hypocotyls is increased compared to that of wild-type plants. Under Rc conditions the hypocotyl length is increased and the cotyledon area is larger than that of wild type. Slightly early flowering-L. Qu-2007 FUNCTION: Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}. MISCELLANEOUS: Regulated at the level of mRNA maturation by RH42 (PubMed:23371945). The RVE2 pre-mRNA can be alternatively spliced, generating a poison cassette exon that harbors an very early in-frame premature termination codon. The resulting severely truncated mRNA is not efficiently translated (PubMed:22747664). {ECO:0000305|PubMed:22747664, ECO:0000305|PubMed:23371945}. 32436 Protein REVEILLE 2 (MYB family transcription factor Circadian 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351] locus:2169135; AT5G37260 Myb-like DNA-binding domain Os06g0728700 protein (Putative MYB transcription factor) (cDNA clone:002-130-E11, full insert sequence) Q5Z5B9 Q5Z5B9_ORYSJ Os06g0728700 OsJ_22733 OSJNBa0069C14.1 OSNPB_060728700 P0017G10.36 ENOG411EKNY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os02g0680700 protein,Os06g0669700 protein (Fragment) B9F1T8,Q0DA85 B9F1T8_ORYSJ,Q0DA85_ORYSJ Os02g0680700 OsJ_07933 OSNPB_020680700,Os06g0669700 Os06g0669700 OSNPB_060669700 ENOG411EKNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKNW LHY Q6R0H1,F4HQH3,F4HQG9 LHY_ARATH,F4HQH3_ARATH,F4HQG9_ARATH Protein LHY (MYB-related transcription factor LHY) (Protein LATE ELONGATED HYPOCOTYL),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Shorter circadian oscillations. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19218364}. The mutant plants are hypersensitive to both FRc and Rc light treatments in hypocotyl elongation and exhibits a small reciprocal enlargement in cotyledon area albeit not statistically significant. Short circadian rhythms; Early flowering under short days-G. Coupland-2002 FUNCTION: Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:9657154}. MISCELLANEOUS: CCA1 and LHY are only partially redundant, but they bind to the same region of the promoters. 70438,69942,70310 Protein LHY (MYB-related transcription factor LHY) (Protein LATE ELONGATED HYPOCOTYL),Homeodomain-like superfamily protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; circadian rhythm [GO:0007623]; long-day photoperiodism, flowering [GO:0048574]; negative regulation of circadian rhythm [GO:0042754]; negative regulation of sequence-specific DNA binding transcription factor activity [GO:0043433]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364}. locus:2200970; AT1G01060 late elongated hypocotyl NA NA NA NA NA NA NA ENOG411EKNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os02g0685200 protein (Putative late elongated hypocoty) Q6ZHD2 Q6ZHD2_ORYSJ Os02g0685200 Os02g0685200 OJ1212_A08.27 OJ1717_A09.14 OsJ_07960 OSNPB_020685200 ENOG411EKNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb transcription factor NA NA NA NA NA NA NA ENOG411EKNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EKNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain OSJNBa0089N06.14 protein (Os04g0629300 protein) (cDNA clone:J033089H07, full insert sequence),Os04g0629300 protein (Fragment) Q0J9V7,A0A0P0WF49 Q0J9V7_ORYSJ,A0A0P0WF49_ORYSJ Os04g0629300 Os04g0629300 OsJ_16271 OSJNBa0089N06.14 OSNPB_040629300,Os04g0629300 OSNPB_040629300 ENOG411EKNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EKNA RAD5B Q9FIY7 SM3L3_ARATH DNA repair protein RAD5B (EC 3.6.4.-) (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3) (SMARCA3-like protein 3) (RAD5 homolog B) (AtRAD5B) FUNCTION: Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for DNA repair. Does not seem to be required for DNA repair and regulation of homologous recombination (HR) (PubMed:18310306). {ECO:0000250, ECO:0000269|PubMed:18310306}. 3.6.4.- 144333 DNA repair protein RAD5B (EC 3.6.4.-) (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3) (SMARCA3-like protein 3) (RAD5 homolog B) (AtRAD5B) chloroplast envelope [GO:0009941]; nucleus [GO:0005634]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281] locus:2158357; AT5G43530 SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like NA NA NA NA NA NA NA ENOG411EKNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase NA NA NA NA NA NA NA ENOG411EKND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os01g0372400 protein (Putative glutathione transferase) (cDNA clone:002-141-G07, full insert sequence) Q93VX8 Q93VX8_ORYSJ Os01g0372400 B1039D07.23 B1045D11.1 OSNPB_010372400 ENOG411EKN9 EDA16,FRG3 F4HTG1,F4J2R0,B3H7J3 F4HTG1_ARATH,F4J2R0_ARATH,B3H7J3_ARATH SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 141129,72995,124164 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; embryo sac development [GO:0009553],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; helicase activity [GO:0004386],ATP binding [GO:0005524]; helicase activity [GO:0004386] locus:2008470;,locus:2089318; AT1G61140,AT3G16600 SNF2 family N-terminal domain Os08g0180300 protein (Putative SNF2 domain-containing protein) (cDNA clone:J023009O07, full insert sequence),Os01g0779400 protein (Putative ATPase),Os01g0779400 protein (Putative ATPase) (cDNA clone:J013116F16, full insert sequence) Q6Z9U5,Q5ZCG4,Q5ZCG5 Q6Z9U5_ORYSJ,Q5ZCG4_ORYSJ,Q5ZCG5_ORYSJ Os08g0180300 Os08g0180300 OsJ_26263 OSNPB_080180300 P0455A11.14,P0010B10.13-2 Os01g0779400 OSNPB_010779400,P0010B10.13-1 Os01g0779400 OSNPB_010779400 ENOG411EKN0 Q945K9 Q945K9_ARATH AT4g34150/F28A23_90 (At4g34150) (Calcium-dependent lipid-binding (CaLB domain) family protein) (Uncharacterized protein At4g34150) 27052 AT4g34150/F28A23_90 (At4g34150) (Calcium-dependent lipid-binding (CaLB domain) family protein) (Uncharacterized protein At4g34150) cytosol [GO:0005829]; plasmodesma [GO:0009506]; response to cold [GO:0009409] locus:2124321; AT4G34150 domain-containing protein NA NA NA NA NA NA NA ENOG411EKN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A Os04g0177300 protein A0A0P0W7G8 A0A0P0W7G8_ORYSJ Os04g0177300 OSNPB_040177300 ENOG411EKN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A NA NA NA NA NA NA NA ENOG411EKN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA elicitor-responsive protein NA NA NA NA NA NA NA ENOG411E12D FTIP1,MDN11.14 Q9FL59,Q84TJ7,Q9FI32,A0A1P8B6W6,A0A1P8B6X8 FTIP1_ARATH,Q84TJ7_ARATH,Q9FI32_ARATH,A0A1P8B6W6_ARATH,A0A1P8B6X8_ARATH FT-interacting protein 1,C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase like protein) (Uncharacterized protein At4g11620),C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase-like protein),C2 calcium/lipid-binding plant phosphoribosyltransferase family protein DISRUPTION PHENOTYPE: Late flowering under long days. {ECO:0000269|PubMed:22529749}. FUNCTION: Involved in the export of FT from the phloem companion cells to the sieve elements through the plasmodesmata. Regulates flowering time under long days. {ECO:0000269|PubMed:22529749}. MISCELLANEOUS: Unlike other flowering promoters, overexpression of FTIP1 causes late flowering due to the deregulation of FT transport out of the phloem system. {ECO:0000269|PubMed:22529749}. 91003,115959,118798,100567,115544 FT-interacting protein 1,C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase like protein) (Uncharacterized protein At4g11620),C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase-like protein),C2 calcium/lipid-binding plant phosphoribosyltransferase family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; plasmodesmatal endoplasmic reticulum [GO:0009511]; protein transporter activity [GO:0008565]; transferase activity, transferring glycosyl groups [GO:0016757]; cellular protein localization [GO:0034613]; flower development [GO:0009908]; long-day photoperiodism, flowering [GO:0048574]; positive regulation of flower development [GO:0009911]; vegetative to reproductive phase transition of meristem [GO:0010228],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Expressed in the vascular tissues of cotyledons and rosette leaves. Specifically located in the phloem including companion cells. Not detected in the shoot apical meristem. {ECO:0000269|PubMed:22529749}. locus:2169379;,locus:2139727;,locus:2162712; AT5G06850,AT4G11610,AT5G48060 domain-containing protein OSJNBa0088H09.3 protein (Os04g0683800 protein) (cDNA clone:J033113J04, full insert sequence),Os05g0370600 protein (Putative anthranilate phosphoribosyltransferase),Os05g0370600 protein (Fragment),Os06g0614000 protein (Fragment),Os12g0187500 protein (Fragment) Q7XPV3,Q60EW9,A0A0N7KKN1,A0A0P0WYT4,A0A0P0Y7S4 Q7XPV3_ORYSJ,Q60EW9_ORYSJ,A0A0N7KKN1_ORYSJ,A0A0P0WYT4_ORYSJ,A0A0P0Y7S4_ORYSJ Os04g0683800 OSJNBa0088H09.3 OSNPB_040683800,Os05g0370600 OJ1118_F06.6 OsJ_18293 OSNPB_050370600,Os05g0370600 OSNPB_050370600,Os06g0614000 OSNPB_060614000,Os12g0187500 OSNPB_120187500 ENOG411E12E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0350200 protein A0A0N7KCX4 A0A0N7KCX4_ORYSJ Os01g0350200 OSNPB_010350200 ENOG411E12F TCP8 Q9C518 TCP8_ARATH Transcription factor TCP8 FUNCTION: Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. 42471 Transcription factor TCP8 nucleus [GO:0005634]; core promoter binding [GO:0001047]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2196220; AT1G58100 transcription factor Os12g0173300 protein (Os12g0173333 protein) (TCP family transcription factor containing protein, expressed),Os04g0542302 protein (Fragment) Q2QX18,A0A0P0WD13 Q2QX18_ORYSJ,A0A0P0WD13_ORYSJ Os12g0173300 LOC_Os12g07480 Os12g0173333 OSNPB_120173300,Os04g0542302 OSNPB_040542302 ENOG411E12A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger domain of monoamine-oxidase A repressor R1 Expressed protein (Os03g0712100 protein) (cDNA clone:002-100-F02, full insert sequence) Q10E05 Q10E05_ORYSJ Os03g0712100 OSJNBb0033N16.14 LOC_Os03g50420 Os03g0712100 OSNPB_030712100 ENOG411E12C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: LSD1 zinc finger Protein LOL5 (OsLOL2) (Protein LSD ONE LIKE 5) (OsLOL5) (Putative zinc finger LOL5),Os01g0612700 protein (Fragment) Q704V3,A0A0P0V571 LOL5_ORYSJ,A0A0P0V571_ORYSJ LOL5 LOL2 Os01g0612700 LOC_Os01g42710 P0046B10.32 P0410E01.13,Os01g0612700 OSNPB_010612700 FUNCTION: Involved in plant growth and disease resistance. {ECO:0000269|PubMed:17404758}. MISCELLANEOUS: Plants silencing LOL2 display a dwarf phenotype, decreased content of gibberellin GA1, reduced expression of KS1 involved in gibberellin biosynthesis and reduced resistance to bacterial blight. Plants overexpressing LOL2 show constitutive expression of PR1 and enhanced resistance to bacterial blight. ENOG411E12H F4HSH8 F4HSH8_ARATH Glycosyltransferase (Transferring glycosyl group transferase (DUF604)) 62115 Glycosyltransferase (Transferring glycosyl group transferase (DUF604)) integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2026514; AT1G07850 Protein of unknown function DUF604 NA NA NA NA NA NA NA ENOG411E12I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os09g0482640 protein (cDNA clone:J013041M17, full insert sequence),Os08g0501600 protein (Fragment) B7EPB0,A0A0N7KQ36 B7EPB0_ORYSJ,A0A0N7KQ36_ORYSJ Os09g0482640 Os09g0482640 OSNPB_090482640,Os08g0501600 OSNPB_080501600 ENOG411E12J PI4KG1,PI4KG8 O22199,Q0WMZ6,A0A1I9LRU9 P4KG1_ARATH,P4KG8_ARATH,A0A1I9LRU9_ARATH Phosphatidylinositol 4-kinase gamma 1 (AtPI4Kgamma1) (PI-4Kgamma1) (PI4K gamma 1) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma 8 (AtPI4Kgamma8) (PI-4Kgamma8) (PI4K gamma 8) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma-like protein Anthers of plants homozygous for a T-DNA insertion in At2g40850 contained only a small number of pollen grains and consequently few seeds were produced per plant. Microscopic examination of the mutant anthers revealed that meiosis the earliest step of pollen formation was not affected. However after tetrads had formed the cells of the tapetum showed abnormally enlarged vacuoles. Later in development pollen grains exhibited irregular shapes and in mature anthers most of them had collapsed. Reduced fertility due to pollen defects-E. Meyerowitz-2007 FUNCTION: The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3). {ECO:0000250}. 2.7.1.67 61366,58376,58724 Phosphatidylinositol 4-kinase gamma 1 (AtPI4Kgamma1) (PI-4Kgamma1) (PI4K gamma 1) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma 8 (AtPI4Kgamma8) (PI-4Kgamma8) (PI4K gamma 8) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma-like protein 1-phosphatidylinositol 4-kinase activity [GO:0004430]; ATP binding [GO:0005524],kinase activity [GO:0016301] locus:2058485;,locus:2102604; AT2G40850,AT3G56600 phosphatidylinositol NA NA NA NA NA NA NA ENOG411E12T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA growth-regulating factor Growth-regulating factor 5 (OsGRF5) (Transcription activator GRF5) Q6AWY4 GRF5_ORYSJ GRF5 Os06g0116200 LOC_Os06g02560 OSJNBa0019F11.24 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411E12U A0A1P8B0P5,F4IIZ8 A0A1P8B0P5_ARATH,F4IIZ8_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein 34548,39679 Calcium-dependent lipid-binding (CaLB domain) family protein locus:5019474737; AT2G40815 NA Os01g0818100 protein (Proline-rich family protein-like) Q5QMK9 Q5QMK9_ORYSJ Os01g0818100 OsJ_03877 OSNPB_010818100 P0454H12.26 ENOG411E12V SCPL35 Q9LEY1 SCP35_ARATH Serine carboxypeptidase-like 35 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 53608 Serine carboxypeptidase-like 35 (EC 3.4.16.-) extracellular region [GO:0005576]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in seedlings, flowers and siliques. {ECO:0000269|PubMed:15908604}. locus:2181504; AT5G08260 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-) (Fragment) Q0JBL4 Q0JBL4_ORYSJ Os04g0525700 Os04g0525700 OSNPB_040525700 ENOG411E12W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os08g0273783 protein (Fragment),Os02g0513976 protein (Fragment),Os03g0237250 protein,Os03g0310200 protein A0A0P0XDT6,A0A0P0VJI1,A0A0P0VV73,A0A0P0VXG4 A0A0P0XDT6_ORYSJ,A0A0P0VJI1_ORYSJ,A0A0P0VV73_ORYSJ,A0A0P0VXG4_ORYSJ Os08g0273783 OSNPB_080273783,Os02g0513976 OSNPB_020513976,Os03g0237250 OSNPB_030237250,Os03g0310200 OSNPB_030310200 ENOG411E12P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase THESEUS 1-like NA NA NA NA NA NA NA ENOG411E12Q A0A1P8B374,F4JW44 A0A1P8B374_ARATH,F4JW44_ARATH Translation initiation factor 25282,26612 Translation initiation factor translation initiation factor activity [GO:0003743] locus:2135202; AT4G39630 NA Os08g0290400 protein (cDNA clone:J023027D13, full insert sequence) Q6Z2A9 Q6Z2A9_ORYSJ OJ1034_C08.37-1 P0467G09.11-1 Os08g0290400 OsJ_26768 OSNPB_080290400 ENOG411E12S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ATP-binding cassette sub-family A ABC1 member NA NA NA NA NA NA NA ENOG411E12X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0197500 protein (Putative stripe rust resistance protein Yr10),Os07g0197300 protein (Putative stripe rust resistance protein Yr10),Os02g0300500 protein,Os10g0568600 protein (Fragment),Os12g0166600 protein Q6Z392,Q6Z397,A0A0P0VHX5,A0A0P0XXJ6,A0A0N7KTM5 Q6Z392_ORYSJ,Q6Z397_ORYSJ,A0A0P0VHX5_ORYSJ,A0A0P0XXJ6_ORYSJ,A0A0N7KTM5_ORYSJ Os07g0197500 OSNPB_070197500 P0417F02.11 P0589E08.30,Os07g0197300 OSNPB_070197300 P0417F02.8 P0589E08.27,Os02g0300500 OSNPB_020300500,Os10g0568600 OSNPB_100568600,Os12g0166600 OSNPB_120166600 ENOG411E12Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os03g0680500 protein,Os03g0680566 protein,Os03g0680200 protein,Os03g0680600 protein,Os03g0680300 protein,Os03g0680400 protein Q9AYD5,A0A0P0W217,A0A0P0W1A9,A0A0N7KHU0,A0A0P0W1F9,A0A0P0W207 Q9AYD5_ORYSJ,A0A0P0W217_ORYSJ,A0A0P0W1A9_ORYSJ,A0A0N7KHU0_ORYSJ,A0A0P0W1F9_ORYSJ,A0A0P0W207_ORYSJ Os03g0680500 Os03g47700 OsJ_12114 OSNPB_030680500,Os03g0680566 OSNPB_030680566,Os03g0680200 OSNPB_030680200,Os03g0680600 OSNPB_030680600,Os03g0680300 OSNPB_030680300,Os03g0680400 OSNPB_030680400 ENOG411E12Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os06g0560300 protein A0A0P0WYC6 A0A0P0WYC6_ORYSJ Os06g0560300 OSNPB_060560300 ENOG411E124 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like Flavin-containing monooxygenase (EC 1.-.-.-),Os06g0203400 protein (Fragment) Q69SQ4,Q69SQ3,Q69NI6,A0A0N7KLQ5 Q69SQ4_ORYSJ,Q69SQ3_ORYSJ,Q69NI6_ORYSJ,A0A0N7KLQ5_ORYSJ Os06g0203200 Os06g0203200 OsJ_20497 OSJNBa0016O19.28-2 OSNPB_060203200,OSJNBa0016O19.28-1 Os06g0203200 OSNPB_060203200,Os09g0549300 Os09g0549300 OJ1210_A07.17 OsJ_30238 OSNPB_090549300,Os06g0203400 OSNPB_060203400 ENOG411E125 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain containing protein Enhancer of shoot regeneration ESR1-like protein (Os02g0594300 protein) Q6ZH77 Q6ZH77_ORYSJ Os02g0594300 Os02g0594300 OJ1067_B01.18 OJ1126_D09.5 OSNPB_020594300 ENOG411E126 Q9M0I4 Q9M0I4_ARATH At4g28230 (Uncharacterized protein At4g28230) 44715 At4g28230 (Uncharacterized protein At4g28230) locus:2123723; AT4G28230 NA NA NA NA NA NA NA NA ENOG411E127 O81825,A0A1P8B4J8 DRL28_ARATH,A0A1P8B4J8_ARATH Probable disease resistance protein At4g27220,NB-ARC domain-containing disease resistance protein FUNCTION: Probable disease resistance protein. {ECO:0000250}. 103914,104855 Probable disease resistance protein At4g27220,NB-ARC domain-containing disease resistance protein plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952] locus:2131689; AT4G27220 resistance protein NA NA NA NA NA NA NA ENOG411E120 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-box zinc finger Os02g0610500 protein (Putative COL1 protein) (cDNA clone:J023004D12, full insert sequence),OSJNBa0067K08.19 protein (Os04g0497700 protein) Q6K9C5,Q7XQH7 Q6K9C5_ORYSJ,Q7XQH7_ORYSJ Os02g0610500 Os02g0610500 OJ1476_F05.18 OSNPB_020610500,Os04g0497700 Os04g0497700 OSJNBa0067K08.19 OSNPB_040497700 ENOG411E121 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Syntaxin 6 N-terminal Os05g0443700 protein (cDNA clone:J023081K10, full insert sequence) Q60DE9 Q60DE9_ORYSJ Os05g0443700 B1110B01.19 OSJNBa0020H14.15 OSNPB_050443700 ENOG411E128 VBF,PP2B15,PP2B13 Q9C7K0,O80494,Q9C7J9 VBF_ARATH,P2B15_ARATH,P2B13_ARATH F-box protein VBF (Protein PHLOEM PROTEIN 2-LIKE B14) (AtPP2-B14) (VIP1-binding F-box protein),F-box protein PP2-B15 (Protein PHLOEM PROTEIN 2-LIKE B15) (AtPP2-B15),F-box protein PP2-B13 (Protein PHLOEM PROTEIN 2-LIKE B13) (AtPP2-B13) DISRUPTION PHENOTYPE: Impaired Agrobacterium-mediated tumor formation. {ECO:0000269|PubMed:20227663}. FUNCTION: Component of SCF(VBF) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins such as VIP1 and Agrobacterium virE2, after their implication in T-DNA translocation to the host nucleus (can functionally replace Agrobacterium VirF). Required during Agrobacterium-induced tumor formation. {ECO:0000269|PubMed:20227663}. 31840,32669,31941 F-box protein VBF (Protein PHLOEM PROTEIN 2-LIKE B14) (AtPP2-B14) (VIP1-binding F-box protein),F-box protein PP2-B15 (Protein PHLOEM PROTEIN 2-LIKE B15) (AtPP2-B15),F-box protein PP2-B13 (Protein PHLOEM PROTEIN 2-LIKE B13) (AtPP2-B13) cytoplasm [GO:0005737]; nucleus [GO:0005634]; carbohydrate binding [GO:0030246],carbohydrate binding [GO:0030246] locus:2011791;,locus:505006110;,locus:2011806; AT1G56250,AT1G09155,AT1G56240 Phloem protein NA NA NA NA NA NA NA ENOG411E129 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin response factor Auxin response factor 14,Os05g0515400 protein (Fragment),Auxin response factor (Fragment) Q0DGS1,A0A0N7KL31,A0A0P0WPL8 ARFN_ORYSJ,A0A0N7KL31_ORYSJ,A0A0P0WPL8_ORYSJ ARF14 Os05g0515400 LOC_Os05g43920 P0022D06.14,Os05g0515400 OSNPB_050515400 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. ENOG411DR59 MED24.13 O64885,F4KI15 BCCIP_ARATH,F4KI15_ARATH Protein BCCIP homolog,CDK inhibitor P21 binding protein 37946,32057 Protein BCCIP homolog,CDK inhibitor P21 binding protein nucleolus [GO:0005730] locus:2050584;,locus:2150580; AT2G44510,AT5G03830 Protein BCCIP homolog Expressed protein (Os03g0853900 protein) (Putative p21 C-terminal-binding protein (Alternative splicing products)) (cDNA clone:J033149N19, full insert sequence) Q84T78 Q84T78_ORYSJ Os03g0853900 LOC_Os03g63690 Os03g0853900 Os03g63690 OsJ_13413 OSNPB_030853900 ENOG411E58R Q9FZ93 Q9FZ93_ARATH F3H9.15 protein 30336 F3H9.15 protein nucleus [GO:0005634] locus:2032190; AT1G28190 NA NA NA NA NA NA NA NA ENOG411E58V Q8GWI3,F4JMN0 Q8GWI3_ARATH,F4JMN0_ARATH Uncharacterized protein At4g22830 (Uncharacterized protein At4g22830/T12H17_220) (YCF49-like protein),YCF49-like protein 20736,21771 Uncharacterized protein At4g22830 (Uncharacterized protein At4g22830/T12H17_220) (YCF49-like protein),YCF49-like protein integral component of membrane [GO:0016021] locus:2132659; AT4G22830 Protein of unknown function (DUF2499) Os04g0379400 protein (cDNA clone:001-043-E04, full insert sequence) (cDNA clone:J013001F06, full insert sequence) Q0JDT4 Q0JDT4_ORYSJ Os04g0379400 Os04g0379400 OSNPB_040379400 ENOG411E58F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DCD NA NA NA NA NA NA NA ENOG411E58N LSM7 Q9SI54 LSM7_ARATH Sm-like protein LSM7 (AtLSM7) (Protein EMBRYO DEFECTIVE 2816) (U6 snRNA-associated Sm-like protein LSM7) Embryo defective; Gametophyte defective (inferred)-D. Meinke-2009 FUNCTION: Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-430039;R-ATH-72163; 10773 Sm-like protein LSM7 (AtLSM7) (Protein EMBRYO DEFECTIVE 2816) (U6 snRNA-associated Sm-like protein LSM7) catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; Lsm1-7-Pat1 complex [GO:1990726]; spliceosomal tri-snRNP complex [GO:0097526]; U12-type spliceosomal complex [GO:0005689]; U2-type prespliceosome [GO:0071004]; U6 snRNP [GO:0005688]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; nuclear-transcribed mRNA catabolic process [GO:0000956]; RNA processing [GO:0006396] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2056825; AT2G03870 U6 snRNA-associated Sm-like protein Os08g0177700 protein (Fragment) A0A0P0XCL4 A0A0P0XCL4_ORYSJ Os08g0177700 OSNPB_080177700 ENOG411EB41 NRT2.3 Q9FJH7 NRT23_ARATH High affinity nitrate transporter 2.3 (AtNRT2:3) FUNCTION: Involved in high-affinity nitrate transport. Acts as a dual component transporter with NTR3.1 (By similarity). {ECO:0000250}. 58230 High affinity nitrate transporter 2.3 (AtNRT2:3) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706] TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:12668777}. locus:2159290; AT5G60780 Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EB43 O82274 PLA19_ARATH Phospholipase A1-IIbeta (EC 3.1.1.-) FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ARA:AT2G31100-MONOMER; 3.1.1.- 47581 Phospholipase A1-IIbeta (EC 3.1.1.-) cytoplasm [GO:0005737]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; lipid catabolic process [GO:0016042] locus:2055884; AT2G31100 Lipase (class 3) NA NA NA NA NA NA NA ENOG411EB42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EB45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB44 O04551 O04551_ARATH Plant/protein (T7N9.8) (Uncharacterized protein At1g27020) 35079 Plant/protein (T7N9.8) (Uncharacterized protein At1g27020) locus:2205749; AT1G27020 NA NA NA NA NA NA NA NA ENOG411EB4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os08g0343600 protein (Fragment) A0A0P0XEY6 A0A0P0XEY6_ORYSJ Os08g0343600 OSNPB_080343600 ENOG411EB4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF328) NA NA NA NA NA NA NA ENOG411EB4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EB4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBQ NA NA NA NA NA NA NA ENOG411EB4R Q9FM14 SIL11_ARATH E3 ubiquitin-protein ligase SINA-like 11 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 11) (Seven in absentia-like protein 11) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5689880;R-ATH-983168; 2.3.2.27 35880 E3 ubiquitin-protein ligase SINA-like 11 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 11) (Seven in absentia-like protein 11) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511] AT5G62800 Seven in absentia protein family NA NA NA NA NA NA NA ENOG411EB4U F13I12.130 Q9SD65 Q9SD65_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At3g47080) (Uncharacterized protein F13I12.130) 58191 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At3g47080) (Uncharacterized protein F13I12.130) locus:2075616; AT3G47080 NA NA NA NA NA NA NA NA ENOG411EB4T F6a14.18 Q9M9U2 Q9M9U2_ARATH MYB transcription factor (Myb domain protein 47) (Putative MYB47 transcription factor) 30592 MYB transcription factor (Myb domain protein 47) (Putative MYB47 transcription factor) cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651] locus:2035015; AT1G18710 myb domain protein 47 NA NA NA NA NA NA NA ENOG411EB4W CID13 Q9FGE6 CID13_ARATH Polyadenylate-binding protein-interacting protein 13 (PABP-interacting protein 13) (Poly(A)-binding protein-interacting protein 13) (PAM2-containing protein CID13) (Protein CTC-INTERACTING DOMAIN 13) 36095 Polyadenylate-binding protein-interacting protein 13 (PABP-interacting protein 13) (Poly(A)-binding protein-interacting protein 13) (PAM2-containing protein CID13) (Protein CTC-INTERACTING DOMAIN 13) RNA binding [GO:0003723] locus:2184022; AT5G24440 CTC-Interacting Domain 13 NA NA NA NA NA NA NA ENOG411EB4H T5N23_100 Q9M1S6,F4JE14 Q9M1S6_ARATH,F4JE14_ARATH Uncharacterized protein T5N23_100,Uncharacterized protein 49473,44117 Uncharacterized protein T5N23_100,Uncharacterized protein locus:2102405; AT3G54740 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411EB4C Q9LXX8 WTR27_ARATH WAT1-related protein At3g56620 41347 WAT1-related protein At3g56620 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2102629; AT3G56620 integral membrane family protein nodulin MtN21-related NA NA NA NA NA NA NA ENOG411EB4B Q9C7F1,A0A1P8AMD1 PPR61_ARATH,A0A1P8AMD1_ARATH Putative pentatricopeptide repeat-containing protein At1g28020,PPR containing protein 65309,26460 Putative pentatricopeptide repeat-containing protein At1g28020,PPR containing protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2010459; AT1G28020 repeat-containing protein NA NA NA NA NA NA NA ENOG411EB4D T19F6.12,ALL1 O22983,A0A1P8B3Y8,F4JQ41 O22983_ARATH,A0A1P8B3Y8_ARATH,F4JQ41_ARATH Carbon-carbon lyase (T19F6.12 protein) (Uncharacterized protein AT4g24070),Aldolase like Delayed growth rate; reduced apical dominance; small curled leaves; late flowering;delayed senescence. 6842,17811,24632 Carbon-carbon lyase (T19F6.12 protein) (Uncharacterized protein AT4g24070),Aldolase like cytoplasm [GO:0005737]; aldehyde-lyase activity [GO:0016832]; carbohydrate metabolic process [GO:0005975],catalytic activity [GO:0003824],cytoplasm [GO:0005737]; aldehyde-lyase activity [GO:0016832]; carbohydrate metabolic process [GO:0005975]; cytokinin-activated signaling pathway [GO:0009736] locus:2134991;,locus:2135001; AT4G24070,AT4G24080 HpcH/HpaI aldolase/citrate lyase family NA NA NA NA NA NA NA ENOG411EB4F Q94CE6 Q94CE6_ARATH PAPA-1-like family protein / zinc finger (HIT type) family protein (Uncharacterized protein At3g06660) 46922 PAPA-1-like family protein / zinc finger (HIT type) family protein (Uncharacterized protein At3g06660) Ino80 complex [GO:0031011]; chromatin remodeling [GO:0006338]; regulation of transcription, DNA-templated [GO:0006355] locus:2083403; AT3G06660 PAPA-1-like conserved region NA NA NA NA NA NA NA ENOG411E9ZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411E2XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: - F-box and DUF domain containing protein Os01g0942200 protein,Os04g0563300 protein (Fragment),Os03g0600800 protein,Os03g0601100 protein (Fragment),Os04g0563401 protein Q8S9P5,Q0JB10,A0A0P0WDE2,A0A0P0VZY9,A0A0P0VZY5,A0A0N7KJI3 Q8S9P5_ORYSJ,Q0JB10_ORYSJ,A0A0P0WDE2_ORYSJ,A0A0P0VZY9_ORYSJ,A0A0P0VZY5_ORYSJ,A0A0N7KJI3_ORYSJ Os01g0942200 Os01g0942200 OSNPB_010942200 P0432C03.31,Os04g0563300 Os04g0563300 OSNPB_040563300,Os04g0563300 OSNPB_040563300,Os03g0600800 OSNPB_030600800,Os03g0601100 OSNPB_030601100,Os04g0563401 OSNPB_040563401 ENOG411E9ZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9ZK Q4PSP2 Q4PSP2_ARATH Regulator of Vps4 activity in the MVB pathway protein 24419 Regulator of Vps4 activity in the MVB pathway protein protein transport [GO:0015031] locus:2090166; AT3G15490 Regulator of Vps4 activity in the MVB pathway NA NA NA NA NA NA NA ENOG411DPSG Q9C5N3 Q9C5N3_ARATH Serine/threonine-protein phosphatase 2A activator (EC 5.2.1.8) (Phosphotyrosyl phosphatase activator) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU361210}. 5.2.1.8 44483 Serine/threonine-protein phosphatase 2A activator (EC 5.2.1.8) (Phosphotyrosyl phosphatase activator) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein phosphatase type 2A complex [GO:0000159]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein tyrosine phosphatase activator activity [GO:0008160]; mitotic spindle organization in nucleus [GO:0030472] locus:2138748; AT4G08960 serine threonine-protein phosphatase 2A Serine/threonine-protein phosphatase 2A activator (EC 5.2.1.8) (Phosphotyrosyl phosphatase activator) Q67X79 Q67X79_ORYSJ Os06g0219800 Os06g0219800 OSNPB_060219800 P0436F11.29 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU361210}. ENOG411DPSJ Q93Z08,Q9M088 E136_ARATH,E135_ARATH Glucan endo-1,3-beta-glucosidase 6 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 6) ((1->3)-beta-glucanase 6) (Beta-1,3-endoglucanase 6) (Beta-1,3-glucanase 6),Glucan endo-1,3-beta-glucosidase 5 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 5) ((1->3)-beta-glucanase 5) (Beta-1,3-endoglucanase 5) (Beta-1,3-glucanase 5) ARA:AT5G58090-MONOMER;,ARA:AT4G31140-MONOMER; 3.2.1.39 52211,52715 Glucan endo-1,3-beta-glucosidase 6 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 6) ((1->3)-beta-glucanase 6) (Beta-1,3-endoglucanase 6) (Beta-1,3-glucanase 6),Glucan endo-1,3-beta-glucosidase 5 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 5) ((1->3)-beta-glucanase 5) (Beta-1,3-endoglucanase 5) (Beta-1,3-glucanase 5) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952] locus:2155841;,locus:2126286; AT5G58090,AT4G31140 glucan endo-1-3-beta-glucosidase Os02g0139300 protein (Putative beta-1,3-glucanase) (cDNA clone:J013116O04, full insert sequence) (cDNA clone:J033034E16, full insert sequence),Os08g0224500 protein (Putative 3-glucanase) (cDNA clone:002-118-H02, full insert sequence) Q6YXZ6,Q84QM8 Q6YXZ6_ORYSJ,Q84QM8_ORYSJ Os02g0139300 OJ1679_B08.3 OsJ_05317 OSJNBa0026E05.37 OSNPB_020139300,OJ1006_H01.125 Os08g0224500 OsJ_26463 OSNPB_080224500 P0494D11.1 ENOG411DPSM PAT1 Q02166 TRPD_ARATH Anthranilate phosphoribosyltransferase, chloroplastic (EC 2.4.2.18) Seedling lethal without exogenous tryptophan-R. Last-1991 PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 2/5. ARA:AT5G17990-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 2.4.2.18 46520 Anthranilate phosphoribosyltransferase, chloroplastic (EC 2.4.2.18) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; anthranilate phosphoribosyltransferase activity [GO:0004048]; tryptophan biosynthetic process [GO:0000162] locus:2161528; AT5G17990 Anthranilate phosphoribosyltransferase Anthranilate phosphoribosyltransferase, chloroplast, putative, expressed (Os03g0126000 protein) (cDNA clone:J033069P19, full insert sequence) Q10SD6 Q10SD6_ORYSJ Os03g0126000 LOC_Os03g03450 Os03g0126000 OSNPB_030126000 ENOG411DPSN A0A1P8BDT4,B5X0N4,Q9C592,F4K8D0,A0A1P8B7F2,A0A1P8BDU6,A0A1P8BDY3 A0A1P8BDT4_ARATH,B5X0N4_ARATH,Q9C592_ARATH,F4K8D0_ARATH,A0A1P8B7F2_ARATH,A0A1P8BDU6_ARATH,A0A1P8BDY3_ARATH Alpha/beta-Hydrolases superfamily protein,Alpha/beta-Hydrolases superfamily protein (At4g33180),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g21950) 30744,34844,24622,34578,24499,40699,30080 Alpha/beta-Hydrolases superfamily protein,Alpha/beta-Hydrolases superfamily protein (At4g33180),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g21950) hydrolase activity [GO:0016787] locus:2125909;,locus:504956447; AT4G33180,AT5G21950 hydrolase alpha beta fold family protein Os07g0612400 protein (cDNA clone:002-184-G10, full insert sequence) Q0D4Q8 Q0D4Q8_ORYSJ Os07g0612400 Os07g0612400 OSNPB_070612400 ENOG411DS2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulase (glycosyl hydrolase family 5) Mannan endo-1,4-beta-mannosidase 6 (EC 3.2.1.78) (Beta-mannanase 6) (Endo-beta-1,4-mannanase 6) (OsMAN6) Q0DCM5 MAN6_ORYSJ MAN6 Os06g0311600 LOC_Os06g20620 OSJNBb0005N06.19 ENOG411DPS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding motif protein Os06g0622900 protein (Putative SEB4D) Q69U07 Q69U07_ORYSJ Os06g0622900 OSJNBa0029G06.1 OSNPB_060622900 P0040H10.43 ENOG411DPS7 Q94AJ9 Q94AJ9_ARATH Nucleic acid-binding, OB-fold-like protein (Putative heat shock factor protein hsf8) (Uncharacterized protein At1g12800) 85668 Nucleic acid-binding, OB-fold-like protein (Putative heat shock factor protein hsf8) (Uncharacterized protein At1g12800) chloroplast [GO:0009507]; nucleolus [GO:0005730]; ribosome [GO:0005840]; small-subunit processome [GO:0032040]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; chloroplast rRNA processing [GO:1901259]; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000466]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; RNA folding [GO:0034337] locus:2010336; AT1G12800 S1 RNA binding domain Heat shock factor protein hsf8-like (Os02g0115600 protein) (cDNA clone:J013106A17, full insert sequence),Os02g0115600 protein (Fragment) Q6Z7B3,A0A0P0VDX9 Q6Z7B3_ORYSJ,A0A0P0VDX9_ORYSJ Os02g0115600 Os02g0115600 OJ1442_E05.7 OsJ_05113 OSNPB_020115600 P0036E06.26,Os02g0115600 OSNPB_020115600 ENOG411DPS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0128300 protein (cDNA clone:002-149-B10, full insert sequence) Q688R2 Q688R2_ORYSJ Os05g0128300 OsJ_16987 OSJNBa0056I11.8 OSNPB_050128300 ENOG411EMBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411DXQ1 Q8VYC9 Q8VYC9_ARATH Coiled-coil protein (Uncharacterized protein At1g16210) 26826 Coiled-coil protein (Uncharacterized protein At1g16210) locus:2032845; AT1G16210 Coiled-coil domain-containing protein Os04g0561600 protein,Expressed protein (Os03g0131800 protein) Q0JB20,Q10S74 Q0JB20_ORYSJ,Q10S74_ORYSJ Os04g0561600 Os04g0561600 OSNPB_040561600,Os03g0131800 LOC_Os03g03980 OsJ_09297 OSNPB_030131800 ENOG411E4BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GATA zinc finger Os01g0343300 protein Q8LQW5 Q8LQW5_ORYSJ Os01g0343300 Os01g0343300 B1045F02.28 OSNPB_010343300 ENOG411E4BD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family 16.6 kDa heat shock protein (OsHsp16.6) Q943Q3 HS166_ORYSJ HSP16.6 Os01g0135800 LOC_Os01g04340 OsJ_00276 OSJNBa0083M16.49 ENOG411E4BG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0466800 protein A0A0P0XGP7 A0A0P0XGP7_ORYSJ Os08g0466800 OSNPB_080466800 ENOG411E4BF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0568900 protein (cDNA clone:001-105-F04, full insert sequence) Q7XII6 Q7XII6_ORYSJ Os07g0568900 Os07g0568900 OJ1019_E02.7 OSNPB_070568900 ENOG411E4BA HIPP23 O65657 HIP23_ARATH Heavy metal-associated isoprenylated plant protein 23 (AtHIP23) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 17355 Heavy metal-associated isoprenylated plant protein 23 (AtHIP23) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2135277; AT4G39700 heavy metal-associated domain containing protein expressed Heavy-metal-associated domain-containing protein, putative, expressed (Os03g0383900 protein) (cDNA clone:J023033I19, full insert sequence),Os09g0364800 protein (Fragment) Q10KH9,Q0J2A0 Q10KH9_ORYSJ,Q0J2A0_ORYSJ LOC_Os03g26650 Os03g0383900 OsJ_11078 OSNPB_030383900,Os09g0364800 OSNPB_090364800 ENOG411E4BC LTPG6 F4I082,F4I083 F4I082_ARATH,F4I083_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 25308,25035 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein anchored component of membrane [GO:0031225]; nucleus [GO:0005634] locus:2035711; AT1G55260 Protease inhibitor/seed storage/LTP family Lipid transfer protein-like (Os07g0198300 protein) (cDNA clone:006-201-F08, full insert sequence) Q6Z387 Q6Z387_ORYSJ Os07g0198300 OSNPB_070198300 P0417F02.20 ENOG411E4BB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein NA NA NA NA NA NA NA ENOG411E4BM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: doublecortin domain containing 5 Os01g0635600 protein (Fragment) A0A0P0V5T7 A0A0P0V5T7_ORYSJ Os01g0635600 OSNPB_010635600 ENOG411E4BN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain NA NA NA NA NA NA NA ENOG411E4BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase rRNA N-glycosidase (EC 3.2.2.22) Q9AS85,Q9LGK6 Q9AS85_ORYSJ,Q9LGK6_ORYSJ P0028E10.7 Os01g0167400 OJ1276_B06.5 OsJ_00514 OSNPB_010167400 P0701D05.33,Os01g0160800 Os01g0160800 B1189A09.2 OsJ_00472 OSNPB_010160800 P0041E11.39 ENOG411E4BH WER,MYB66 Q9SEI0,A0A1P8BEE2,A0A1P8BEE0 WER_ARATH,A0A1P8BEE2_ARATH,A0A1P8BEE0_ARATH Transcription factor WER (Myb-related protein 66) (AtMYB66) (Protein WEREWOLF),Myb domain protein 66 Increased root hair production; Increased stomatal density on hypocotyls; Abnormal root epidermal cell patterning-J. Schiefelbein-1999 FUNCTION: Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. MISCELLANEOUS: This protein is called 'Werewolf' because plants lacking WER exhibit hairy roots. 23569,16477,19591 Transcription factor WER (Myb-related protein 66) (AtMYB66) (Protein WEREWOLF),Myb domain protein 66 nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell fate commitment [GO:0045165]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; root hair cell differentiation [GO:0048765]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. locus:2185470; AT5G14750 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E4BK HIPP21 Q9LF57,Q3E9G4 HIP21_ARATH,Q3E9G4_ARATH Heavy metal-associated isoprenylated plant protein 21 (AtHIP21) (AtHIPP21),Heavy metal transport/detoxification superfamily protein DISRUPTION PHENOTYPE: Hipp20, hipp21 and hipp22 triple mutants are cadmium sensitive. {ECO:0000269|PubMed:21072340}. FUNCTION: Heavy-metal-binding protein. Binds cadmium. May be involved in cadmium transport and play a role in cadmium detoxification. {ECO:0000269|PubMed:21072340}. 16996,11761 Heavy metal-associated isoprenylated plant protein 21 (AtHIP21) (AtHIPP21),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; membrane [GO:0016020]; transition metal ion binding [GO:0046914]; cadmium ion homeostasis [GO:0055073]; cellular transition metal ion homeostasis [GO:0046916]; detoxification of cadmium ion [GO:0071585]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed at low levels in leaves and sepals. {ECO:0000269|PubMed:21072340}. locus:2157457; AT5G17450 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E4BJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0541500 protein B9F0F5 B9F0F5_ORYSJ Os02g0541500 OsJ_07055 OSNPB_020541500 ENOG411E4BU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxin thioredoxin reductase variable alpha chain Os04g0528800 protein (cDNA clone:J033135O21, full insert sequence),OSJNBa0074L08.8 protein (Os04g0528800 protein) Q0JBJ5,Q7XUM0 Q0JBJ5_ORYSJ,Q7XUM0_ORYSJ Os04g0528800 Os04g0528800 OSNPB_040528800,Os04g0528800 OsJ_15547 OSJNBa0074L08.8 OSNPB_040528800 ENOG411E4BT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E4BW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4BV Q9SR32 U161_ARATH UPF0161 protein At3g09310 19452 UPF0161 protein At3g09310 locus:2083494; AT3G09310 UPF0161 protein Os11g0706100 protein,Os02g0260400 protein (cDNA clone:J033088I10, full insert sequence),Os11g0706100 protein (Fragment) Q0IQU9,Q6K232,A0A0N7KTE7 Q0IQU9_ORYSJ,Q6K232_ORYSJ,A0A0N7KTE7_ORYSJ Os11g0706100 Os11g0706100 OsJ_34875 OSNPB_110706100,B1178F07.30-1 Os02g0260400 OSJNBa0060K08.40-1 OSNPB_020260400,Os11g0706100 OSNPB_110706100 ENOG411E4BQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q6ZDJ2 Q6ZDJ2_ORYSJ Os08g0375400 Os08g0375400 OSNPB_080375400 P0436B06.22 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E4BP Q9LF32,Q4V397,Q56XJ1,Q3E7H2 Q9LF32_ARATH,Q4V397_ARATH,Q56XJ1_ARATH,Q3E7H2_ARATH Ankyrin repeat family protein (At5g15500) (Uncharacterized protein At5g15500/T20K14_110) (Uncharacterized protein T20K14_110),Ankyrin repeat family protein (At4g10720),Ankyrin repeat family protein (Putative ankyrin-repeat-containing protein),Ankyrin repeat family protein 51541,49711,46061,39693 Ankyrin repeat family protein (At5g15500) (Uncharacterized protein At5g15500/T20K14_110) (Uncharacterized protein T20K14_110),Ankyrin repeat family protein (At4g10720),Ankyrin repeat family protein (Putative ankyrin-repeat-containing protein),Ankyrin repeat family protein integral component of membrane [GO:0016021] locus:2180882;,locus:2132711; AT5G15500,AT4G10720 ankyrin repeat family protein NA NA NA NA NA NA NA ENOG411E4BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein,Os03g0353333 protein Q10LF1,Q10LE6 Q10LF1_ORYSJ,Q10LE6_ORYSJ LOC_Os03g22950 Os03g0352800 OsJ_10857 OSNPB_030352800,Os03g0353333 LOC_Os03g23000 OsJ_10860 OSNPB_030353333 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E4BR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 ERF domain-containing transcription factor NA NA NA NA NA NA NA ENOG411E4BY F8J2_70 Q1G3R9,Q9LFA1,A0A1P8B039,F4IMV8,B3H4H5 Q1G3R9_ARATH,Q9LFA1_ARATH,A0A1P8B039_ARATH,F4IMV8_ARATH,B3H4H5_ARATH RAB6-interacting golgin (DUF662),RAB6-interacting golgin (DUF662) (Uncharacterized protein At3g52900) (Uncharacterized protein F8J2_70) 18100,18864,15390,9901,13179 RAB6-interacting golgin (DUF662),RAB6-interacting golgin (DUF662) (Uncharacterized protein At3g52900) (Uncharacterized protein F8J2_70) integral component of membrane [GO:0016021] locus:1009023152;,locus:2085206; AT2G36355,AT3G52900 Pfam:DUF662 NA NA NA NA NA NA NA ENOG411E4BX Q9FLS0 FB253_ARATH F-box protein At5g07610 48312 F-box protein At5g07610 locus:2160334; AT5G07610 F-Box protein Os05g0172100 protein (cDNA clone:J013156C03, full insert sequence) Q65WV4 Q65WV4_ORYSJ Os05g0172100 OsJ_17298 OSNPB_050172100 P0672D07.2 P0685E10.17 ENOG411E4BZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF506) NA NA NA NA NA NA NA ENOG411E4B5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chitin binding Lectin (Agglutinin) [Cleaved into: Lectin 10 kDa peptide; Lectin 8 kDa peptide] Q0JF21 AGI_ORYSJ Os04g0173800 LOC_Os04g09390 OSJNBb0015C06.8 FUNCTION: N-acetyl-D-glucosamine binding lectin. ENOG411E4B4 T23J7.10 Q9STU5 Q9STU5_ARATH At3g47680 (DNA binding protein) (Uncharacterized protein T23J7.10) 34382 At3g47680 (DNA binding protein) (Uncharacterized protein T23J7.10) locus:2100412; AT3G47680 NA Os12g0543800 protein,Os05g0227800 protein (cDNA clone:002-174-E07, full insert sequence),Os12g0228500 protein (Fragment),Os03g0433733 protein (Fragment),Os12g0169300 protein (Fragment) C7J9P3,Q6AVB6,A0A0N7KTS3,A0A0P0VZT9,A0A0N7KTM8 C7J9P3_ORYSJ,Q6AVB6_ORYSJ,A0A0N7KTS3_ORYSJ,A0A0P0VZT9_ORYSJ,A0A0N7KTM8_ORYSJ Os12g0543800 Os12g0543800 OSNPB_120543800,Os05g0227800 Os05g0227800 OJ1212_C10.14 OSNPB_050227800,Os12g0228500 OSNPB_120228500,Os03g0433733 OSNPB_030433733,Os12g0169300 OSNPB_120169300 ENOG411E4B7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0182000 protein Q2QWU9 Q2QWU9_ORYSJ Os12g0182000 LOC_Os12g08150 OSNPB_120182000 ENOG411E4B6 Q8LCF9,A0A1P8ASU7 Q8LCF9_ARATH,A0A1P8ASU7_ARATH At1g68185 (Ubiquitin-like superfamily protein),Ubiquitin-like superfamily protein 24223,29617 At1g68185 (Ubiquitin-like superfamily protein),Ubiquitin-like superfamily protein nucleus [GO:0005634]; protein tag [GO:0031386]; protein sumoylation [GO:0016925] locus:505006207; AT1G68185 Ubiquitin-2 like Rad60 SUMO-like Os01g0607300 protein (cDNA clone:002-188-C07, full insert sequence) Q5ZBN3 Q5ZBN3_ORYSJ Os01g0607300 Os01g0607300 OSJNBa0090K04.15 OSNPB_010607300 P0704D04.23 ENOG411E4B1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LSD1 zinc finger Protein LOL4 (Protein LSD ONE LIKE 4) (OsLOL4) (Putative zinc finger LOL4) Q84UR0 LOL4_ORYSJ LOL4 Os08g0130100 LOC_Os08g03610 OsJ_25929 P0582D05.124 FUNCTION: Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. ENOG411E4B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411E4B3 SHN2,SHN3 Q9LFN7,Q3E958 SHN2_ARATH,SHN3_ARATH Ethylene-responsive transcription factor SHINE 2,Ethylene-responsive transcription factor SHINE 3 FUNCTION: Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. 21409,21254 Ethylene-responsive transcription factor SHINE 2,Ethylene-responsive transcription factor SHINE 3 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: The SHN2 gene shows a pattern of expression associated with anther and silique dehiscence. Expressed in the stomium region when tapetum degeneration is initiated in the anther. Up to anthesis and until stamens fell off the senescing flower, restricted to the anther dehiscence zone. Subsequently, when petals and sepals withered, found at the bottom of each valve. During silique development, strongly expressed along the valve margin-replum boundary. {ECO:0000269|PubMed:15319479}. TISSUE SPECIFICITY: In flowers. {ECO:0000269|PubMed:15319479}.,TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}. locus:2148022;,locus:2145477; AT5G11190,AT5G25390 Transcription factor NA NA NA NA NA NA NA ENOG411E4B2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411E4B9 Q8RWS0 Q8RWS0_ARATH Chromatin-remodeling complex subunit (Uncharacterized protein At4g38495) 14322 Chromatin-remodeling complex subunit (Uncharacterized protein At4g38495) Ino80 complex [GO:0031011]; chromatin remodeling [GO:0006338]; regulation of transcription, DNA-templated [GO:0006355] locus:1005716392; AT4G38495 INO80 complex subunit Os04g0274400 protein A0A0N7KIR4 A0A0N7KIR4_ORYSJ Os04g0274400 OSNPB_040274400 ENOG411E4B8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain Os03g0101700 protein (Fragment) A0A0N7KGE9 A0A0N7KGE9_ORYSJ Os03g0101700 OSNPB_030101700 ENOG411DXQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os06g0351500 protein (Putative family II extracellular lipase 1) (cDNA clone:006-209-E11, full insert sequence) (cDNA clone:J013122D17, full insert sequence) (cDNA clone:J013168L24, full insert sequence) Q69LT9 Q69LT9_ORYSJ Os06g0351500 Os06g0351500 OSJNBb0014G01.31 OSNPB_060351500 ENOG411DYZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0155200 protein (Putative S-domain receptor-like protein kinase) Q943Q1 Q943Q1_ORYSJ Os01g0155200 OsJ_00430 OSNPB_010155200 P0011G08.15 ENOG411DXQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cys/Met metabolism PLP-dependent enzyme Aminotransferase, classes I and II family protein, expressed (Os10g0484700 protein) Q7XDA3 Q7XDA3_ORYSJ Os10g0484700 LOC_Os10g34350 Os10g0484700 OsJ_31938 OSNPB_100484700 ENOG411DXQR SIGD Q9ZSL6 SIGD_ARATH RNA polymerase sigma factor sigD, chloroplastic (Sigma factor D) (Sigma-D) (RNA polymerase sigma factor sig4) (Atsig4) (Sigma factor 4) DISRUPTION PHENOTYPE: Reduced transcription of the plastid ndhF gene. {ECO:0000269|PubMed:16243785}. Lack of SIG4 in sig4-1 plants cause a strong decrease of ndhF precursor RNA and leads to a strong decrease of NDH complex amount and activity FUNCTION: Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. Regulates transcription of the ndhF gene which codes for a subunit of the plastid NDH [NAD(P)H dehydrogenase] complex. {ECO:0000269|PubMed:16243785}. 47165 RNA polymerase sigma factor sigD, chloroplastic (Sigma factor D) (Sigma-D) (RNA polymerase sigma factor sig4) (Atsig4) (Sigma factor 4) chloroplast [GO:0009507]; DNA binding [GO:0003677]; plastid sigma factor activity [GO:0001053]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to light stimulus [GO:0071482]; DNA-templated transcription, initiation [GO:0006352]; regulation of RNA biosynthetic process [GO:2001141] TISSUE SPECIFICITY: Mostly expressed in leaves, and to a lesser extent in roots. Present in seedlings. {ECO:0000269|PubMed:10946105, ECO:0000269|PubMed:15807777, ECO:0000269|Ref.1}. locus:2173249; AT5G13730 rna polymerase sigma NA NA NA NA NA NA NA ENOG411DYZ7 Q9SHU4 Q9SHU4_ARATH Leucine-rich repeat (LRR) family protein (Putative leucine-rich repeat disease resistance protein) 41221 Leucine-rich repeat (LRR) family protein (Putative leucine-rich repeat disease resistance protein) locus:2049098; AT2G15320 Leucine-rich repeat NA NA NA NA NA NA NA ENOG411DYZ5 HNL,MES3,MES4,MES19,MES6,MES5 Q9LFT6,O80477,O80474,F4IMK4,F4IMK2,F4IMK6,A0A1P8BGG9,A0A1P8B087,A0A1P8B0R3,A0A1P8B065 HNL_ARATH,MES3_ARATH,MES4_ARATH,MES19_ARATH,MES6_ARATH,F4IMK6_ARATH,A0A1P8BGG9_ARATH,A0A1P8B087_ARATH,A0A1P8B0R3_ARATH,A0A1P8B065_ARATH Alpha-hydroxynitrile lyase (AtHNL) (EC 4.1.2.10) ((R)-hydroxynitrile lyase) ((R)-oxynitrilase) (Methylesterase 5) (AtMES5),Methylesterase 3 (AtMES3) (EC 3.1.1.-),Methylesterase 4 (AtMES4) (EC 3.1.1.-) (Alpha/beta fold hydrolase/esterase 4),Putative methylesterase 19 (AtMES19) (EC 3.1.1.-),Putative methylesterase 6 (AtMES6) (EC 3.1.1.-) (Alpha/beta fold hydrolase/esterase 1),Methyl esterase 4,Methyl esterase 5,Methyl esterase 6,Methyl esterase 3 FUNCTION: Involved in cyanogenesis, the release of HCN from injured tissues (By similarity). Displays R-selective hydroxynitrile lyase activity. Also accepts nitromethane (MeNO2) as a donor in a reaction with aromatic aldehydes to yield (R)-beta-nitro alcohols. {ECO:0000250, ECO:0000269|PubMed:17907254, ECO:0000269|PubMed:18467465, ECO:0000269|PubMed:19433222, ECO:0000269|PubMed:21439333}.,FUNCTION: Methylesterase shown to have carboxylesterase activity, methyl indole-3-acetic acid (MeIAA) esterase activity and methyl jasmonate (MeJA) esterase activity in vitro. {ECO:0000269|PubMed:18467465}.,FUNCTION: Methylesterase shown to have carboxylesterase activity and methyl salicylate (MeJA) esterase activity in vitro. {ECO:0000269|PubMed:18643994}.,FUNCTION: Putative methylesterase. ARA:AT5G10300-MONOMER;,ARA:AT2G23610-MONOMER;,ARA:AT2G23580-MONOMER; 4.1.2.10; 4.1.2.10,3.1.1.- 29217,29823,29582,29001,29743,22770,22764,22774,24416,30599 Alpha-hydroxynitrile lyase (AtHNL) (EC 4.1.2.10) ((R)-hydroxynitrile lyase) ((R)-oxynitrilase) (Methylesterase 5) (AtMES5),Methylesterase 3 (AtMES3) (EC 3.1.1.-),Methylesterase 4 (AtMES4) (EC 3.1.1.-) (Alpha/beta fold hydrolase/esterase 4),Putative methylesterase 19 (AtMES19) (EC 3.1.1.-),Putative methylesterase 6 (AtMES6) (EC 3.1.1.-) (Alpha/beta fold hydrolase/esterase 1),Methyl esterase 4,Methyl esterase 5,Methyl esterase 6,Methyl esterase 3 hydrolase activity [GO:0016787]; mandelonitrile lyase activity [GO:0046593]; glycoside catabolic process [GO:0016139]; response to wounding [GO:0009611],hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl jasmonate esterase activity [GO:0080032],hydrolase activity, acting on ester bonds [GO:0016788]; methyl salicylate esterase activity [GO:0080031]; salicylic acid metabolic process [GO:0009696],hydrolase activity [GO:0016787] locus:2145412;,locus:2046862;,locus:2046827;,locus:2046812;,locus:2046773; AT5G10300,AT2G23610,AT2G23580,AT2G23570,AT2G23550 esterase Os01g0787600 protein (Putative ethylene-induced esterase) (cDNA clone:006-205-H08, full insert sequence),Os01g0787600 protein Q8S125,A0A0P0V933 Q8S125_ORYSJ,A0A0P0V933_ORYSJ P0415A04.28-1 Os01g0787600 OSNPB_010787600,Os01g0787600 OSNPB_010787600 ENOG411DS71 NAC057 Q9LSH5 Q9LSH5_ARATH NAC domain containing protein 57 (No apical meristem family protein) 28248 NAC domain containing protein 57 (No apical meristem family protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2089764; AT3G17730 NAC domain-containing protein 74-like Os09g0552800 protein A0A0P0XQ22 A0A0P0XQ22_ORYSJ Os09g0552800 OSNPB_090552800 ENOG411DS77 JASON F4IDQ5,Q6NMH7 JASON_ARATH,Q6NMH7_ARATH Protein JASON,Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit (At2g30820) DISRUPTION PHENOTYPE: Diploid pollen grains (dyads of spores instead of tetrads) due to defective meiosis II. Abnormal spindle orientation at meiosis II. {ECO:0000269|PubMed:21257792}. FUNCTION: Required for normal spindle orientation at male meiosis II and normal formation of tetrad of microspores. Acts as positive regulator of PS1 in male sporogenesis. Not involved in female meiosis. {ECO:0000269|PubMed:21257792}. MISCELLANEOUS: Diploid male spores in jason mutants give rise to viable diploid pollen grains and spontaneous triploid plants in the next generation. {ECO:0000269|PubMed:21257792}. 53142,46518 Protein JASON,Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit (At2g30820) male meiosis II [GO:0007142]; microsporogenesis [GO:0009556]; regulation of transcription, DNA-templated [GO:0006355],transferase activity [GO:0016740] locus:2009165;,locus:2052766; AT1G06660,AT2G30820 NA Os03g0777100 protein (cDNA, clone: J100049A20, full insert sequence) B7FA65 B7FA65_ORYSJ Os03g0777100 OSNPB_030777100 ENOG411DR1X Q8GS18,Q8W4E9,Q8W460,A0A1P8B6A9 Q8GS18_ARATH,Q8W4E9_ARATH,Q8W460_ARATH,A0A1P8B6A9_ARATH At4g31350 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At4g30060) (Uncharacterized protein At4g30060; F6G3.90),At2g19160 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At2g19160; T20K24.18),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 43754,46856,45751,43212 At4g31350 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At4g30060) (Uncharacterized protein At4g30060; F6G3.90),At2g19160 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At2g19160; T20K24.18),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375] locus:2128181;,locus:2126525;,locus:2059040; AT4G31350,AT4G30060,AT2G19160 dna binding protein Os06g0700500 protein (cDNA clone:001-030-D06, full insert sequence),Os06g0661900 protein (Fragment),Os02g0175500 protein Q5Z845,Q0DAD0,Q6EUQ8 Q5Z845_ORYSJ,Q0DAD0_ORYSJ,Q6EUQ8_ORYSJ Os06g0700500 OsJ_22529 OSNPB_060700500 P0468G03.24,Os06g0661900 Os06g0661900 OSNPB_060661900,Os02g0175500 Os02g0175500 OJ1077_E05.12 OsJ_05584 OSNPB_020175500 ENOG411DR1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA galactosyl transferase GMA12/MNN10 family Probable glycosyltransferase 5 (OsGT5) (EC 2.4.-.-) C7J0P3 GT5_ORYSJ GT5 Os03g0306100 LOC_Os03g19330 OsJ_10556 FUNCTION: Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q10MQ0}. ENOG411EAFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EAFJ O65454,A0A1P8B474 FB334_ARATH,A0A1P8B474_ARATH Probable F-box protein At4g22060,F-box only protein 47473,29220 Probable F-box protein At4g22060,F-box only protein locus:2120613; AT4G22060 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EAFA Q9SSG2,Q9LMD4 Q9SSG2_ARATH,Q9LMD4_ARATH F25A4.25 protein (Nodulin-like / Major Facilitator Superfamily protein),F14D16.8 (Nodulin-like / Major Facilitator Superfamily protein) 57615,57783 F25A4.25 protein (Nodulin-like / Major Facilitator Superfamily protein),F14D16.8 (Nodulin-like / Major Facilitator Superfamily protein) integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021] locus:2027284;,locus:2011241; AT1G74780,AT1G18940 Nodulin-like NA NA NA NA NA NA NA ENOG411EMHF PUB47 Q3E9F6 PUB47_ARATH Putative U-box domain-containing protein 47 (EC 2.3.2.27) (Plant U-box protein 47) (RING-type E3 ubiquitin transferase PUB47) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 50089 Putative U-box domain-containing protein 47 (EC 2.3.2.27) (Plant U-box protein 47) (RING-type E3 ubiquitin transferase PUB47) ubiquitin-protein transferase activity [GO:0004842] locus:2146198; AT5G18330 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411DUAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peptide transporter Os03g0235700 protein Q0DTN6 Q0DTN6_ORYSJ Os03g0235700 Os03g0235700 OsJ_10060 OSNPB_030235700 ENOG411DZQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NBS-LRR disease resistance protein Leucine Rich Repeat family protein, expressed (Os11g0211300 protein),Os08g0265300 protein,Os11g0211600 protein,Os11g0211650 protein Q2R8Y8,A0A0N7KPJ8,A0A0P0Y0F0,A0A0P0Y052 Q2R8Y8_ORYSJ,A0A0N7KPJ8_ORYSJ,A0A0P0Y0F0_ORYSJ,A0A0P0Y052_ORYSJ Os11g0211300 LOC_Os11g10550 Os11g0211300 OSNPB_110211300,Os08g0265300 OSNPB_080265300,Os11g0211600 OSNPB_110211600,Os11g0211650 OSNPB_110211650 ENOG411DZQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain containing protein expressed Sulfotransferase (EC 2.8.2.-),Sulfotransferase (EC 2.8.2.-) (Fragment) C7J6H1,Q2R3T7,A0A0P0Y2R7,A0A0P0Y2D2 C7J6H1_ORYSJ,Q2R3T7_ORYSJ,A0A0P0Y2R7_ORYSJ,A0A0P0Y2D2_ORYSJ Os09g0555150 OSNPB_090555150,LOC_Os11g30810 Os11g0503900 OsJ_33987 OSNPB_110503900,Os11g0505300 OSNPB_110505300,Os11g0504900 OSNPB_110504900 ENOG411DZQ3 PDF1A Q9FV53 DEF1A_ARATH Peptide deformylase 1A, chloroplastic/mitochondrial (AtDEF1) (AtPDF1A) (PDF 1A) (EC 3.5.1.88) (Polypeptide deformylase) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:12505980}. FUNCTION: Removes the formyl group from the N-terminal Met of newly synthesized proteins. {ECO:0000269|PubMed:11060042}. 3.5.1.88; 3.5.1.88 29996 Peptide deformylase 1A, chloroplastic/mitochondrial (AtDEF1) (AtPDF1A) (PDF 1A) (EC 3.5.1.88) (Polypeptide deformylase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plant-type cell wall [GO:0009505]; metal ion binding [GO:0046872]; peptide deformylase activity [GO:0042586]; co-translational protein modification [GO:0043686]; N-terminal protein amino acid modification [GO:0031365]; peptidyl-methionine modification [GO:0018206]; translation [GO:0006412] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:11060042}. locus:2037733; AT1G15390 peptide deformylase Peptide deformylase 1A, chloroplastic (OsPDF1A) (PDF 1A) (EC 3.5.1.88),Peptide deformylase (EC 3.5.1.88) (Fragment) B6RGY0,A0A0P0V402 DEF1A_ORYSJ,A0A0P0V402_ORYSJ PDF1A Os01g0555800 LOC_Os01g37510 OsJ_002139 OsJ_02204,Os01g0555800 OSNPB_010555800 FUNCTION: Removes the formyl group from the N-terminal Met of newly synthesized proteins.,FUNCTION: Removes the formyl group from the N-terminal Met of newly synthesized proteins. {ECO:0000256|RuleBase:RU362111}. ENOG411DZQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinesterase Pectinesterase (EC 3.1.1.11),Os04g0513301 protein (Fragment) Q84MV1,A0A0P0WCC6 Q84MV1_ORYSJ,A0A0P0WCC6_ORYSJ LOC_Os03g28090 Os03g0399000 Os03g28090 OsJ_11166 OSNPB_030399000,Os04g0513301 OSNPB_040513301 ENOG411DZQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Os06g0724800 protein (cDNA clone:001-116-H12, full insert sequence) Q5Z988 Q5Z988_ORYSJ Os06g0724800 Os06g0724800 OSNPB_060724800 P0535F09.38 P0548E04.5 ENOG411DZQ7 A1L4Y4,A0A1P8B9R5 A1L4Y4_ARATH,A0A1P8B9R5_ARATH At5g61510 (GroES-like zinc-binding alcohol dehydrogenase family protein),GroES-like zinc-binding alcohol dehydrogenase family protein ARA:AT5G61510-MONOMER; R-ATH-6798695; 44023,37743 At5g61510 (GroES-like zinc-binding alcohol dehydrogenase family protein),GroES-like zinc-binding alcohol dehydrogenase family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; AU-rich element binding [GO:0017091]; NADPH:quinone reductase activity [GO:0003960]; cellular response to oxidative stress [GO:0034599]; response to high light intensity [GO:0009644],oxidoreductase activity [GO:0016491] locus:2151581; AT5G61510 Quinone oxidoreductase Os03g0101600 protein (Fragment) A0A0P0VRW1 A0A0P0VRW1_ORYSJ Os03g0101600 OSNPB_030101600 ENOG411DZQ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0116700 protein (Putative Phytosulfokine receptor) Q6ZGM3 Q6ZGM3_ORYSJ Os02g0116700 Os02g0116700 OJ1442_E05.20 OSNPB_020116700 ENOG411DZQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein Os05g0380300 protein (Putative NBS-LRR resistance protein),Os05g0379700 protein (Putative NBS-LRR protein) (Putative NBS-LRR resistance protein),Os03g0599000 protein,Os01g0953200 protein Q6L4D7,Q6L4D9,C7J081,A0A0P0VCX2 Q6L4D7_ORYSJ,Q6L4D9_ORYSJ,C7J081_ORYSJ,A0A0P0VCX2_ORYSJ Os05g0380300 Os05g0380300 OSJNBa0088M05.3 OSNPB_050380300,Os05g0379700 OJ1126_B11.12 OsJ_18354 OSJNBa0088M05.1 OSNPB_050379700,Os03g0599000 OSNPB_030599000,Os01g0953200 OSNPB_010953200 ENOG411DZQ8 Q9M9C4 Q9M9C4_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Uncharacterized protein T2E12.6) 47125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Uncharacterized protein T2E12.6) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2202324; AT1G68390 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411DUAU ASA1,ASA2 P32068,P32069,A0A1P8B1S3,A0A1I9LMP0,A0A1I9LMN9,F4IY44,F4K0T5 TRPE_ARATH,TRPX_ARATH,A0A1P8B1S3_ARATH,A0A1I9LMP0_ARATH,A0A1I9LMN9_ARATH,F4IY44_ARATH,F4K0T5_ARATH Anthranilate synthase alpha subunit 1, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 1-1) (Anthranilate synthase component I-1) (Protein A-METHYL TRYPTOPHAN RESISTANT 1) (Protein JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1) (Protein TRYPTOPHAN BIOSYNTHESIS 5) (Protein WEAK ETHYLENE INSENSITIVE 2),Anthranilate synthase alpha subunit 2, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 1-2) (Anthranilate synthase component I-2),Anthranilate synthase 2,ADC synthase superfamily protein,Anthranilate synthase alpha subunit 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are insensitive to inhibition of root elongation by ethylene, resistant to the herbicide and anthranilate analog 6-methylanthranilate, resistant to growth inhibition by the tryptophan analog alpha-methyltryptophan and insensitive to feedback inhibition by tryptophan. {ECO:0000269|PubMed:15980261, ECO:0000269|PubMed:19435934, ECO:0000269|PubMed:8587994, ECO:0000269|PubMed:8934623}. Resistant to 6-methylanthranilate (herbicide)-R. Last-1996 FUNCTION: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS to produce anthranilate. Plays an important regulatory role in auxin production via the tryptophan-dependent biosynthetic pathway. {ECO:0000269|PubMed:15980261, ECO:0000269|PubMed:19435934, ECO:0000269|PubMed:7972519, ECO:0000269|PubMed:8587994, ECO:0000269|PubMed:8934623}.,FUNCTION: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS to produce anthranilate (By similarity). {ECO:0000250}. PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5. ARA:AT5G05730-MONOMER;,ARA:AT2G29690-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 4.1.3.27 66312,69816,56890,53617,65873,55367,69675 Anthranilate synthase alpha subunit 1, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 1-1) (Anthranilate synthase component I-1) (Protein A-METHYL TRYPTOPHAN RESISTANT 1) (Protein JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1) (Protein TRYPTOPHAN BIOSYNTHESIS 5) (Protein WEAK ETHYLENE INSENSITIVE 2),Anthranilate synthase alpha subunit 2, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 1-2) (Anthranilate synthase component I-2),Anthranilate synthase 2,ADC synthase superfamily protein,Anthranilate synthase alpha subunit 1 anthranilate synthase complex [GO:0005950]; chloroplast [GO:0009507]; anthranilate synthase activity [GO:0004049]; metal ion binding [GO:0046872]; regulation of auxin biosynthetic process [GO:0010600]; tryptophan biosynthetic process [GO:0000162],anthranilate synthase complex [GO:0005950]; chloroplast [GO:0009507]; anthranilate synthase activity [GO:0004049]; tryptophan biosynthetic process [GO:0000162],biosynthetic process [GO:0009058],anthranilate synthase activity [GO:0004049]; tryptophan biosynthetic process [GO:0000162],anthranilate synthase complex [GO:0005950]; anthranilate synthase activity [GO:0004049]; tryptophan biosynthetic process [GO:0000162],anthranilate synthase complex [GO:0005950]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; anthranilate synthase activity [GO:0004049]; auxin biosynthetic process [GO:0009851]; lateral root formation [GO:0010311]; response to ethylene [GO:0009723]; response to wounding [GO:0009611]; tryptophan biosynthetic process [GO:0000162] TISSUE SPECIFICITY: Expressed in the central cylinder of mature primary root zones, including pericycle and early lateral root primordia, and vasculature of cotyledons. {ECO:0000269|PubMed:18435826}. locus:2005520;,locus:2082028;,locus:2166374; AT5G05730,AT2G29690,AT3G55870 anthranilate synthase Anthranilate synthase alpha subunit 1, chloroplastic (OsASA1) (EC 4.1.3.27),Anthranilate synthase alpha subunit 2, chloroplastic (OsASA2) (EC 4.1.3.27),Os03g0264400 protein,Os03g0264400 protein (Fragment) Q94GF1,Q9XJ29,A0A0P0VVT8,A0A0P0VVQ5 ASA1_ORYSJ,ASA2_ORYSJ,A0A0P0VVT8_ORYSJ,A0A0P0VVQ5_ORYSJ ASA1 OASA1 Os03g0826500 LOC_Os03g61120 OJ1111_B11.9 OsJ_13197 OSJNBa0010E04.11,OsASA2 OASA2 Os03g0264400 LOC_Os03g15780,Os03g0264400 OSNPB_030264400 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are insensitive to feedback inhibition by tryptophan. {ECO:0000269|PubMed:11500548}. FUNCTION: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS to produce anthranilate. {ECO:0000269|PubMed:11500548, ECO:0000269|PubMed:15159631}.,FUNCTION: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS to produce anthranilate. {ECO:0000269|PubMed:15159631}. ENOG411DZQA Q9SVN9,F4JTS6,F4JTS7 Q9SVN9_ARATH,F4JTS6_ARATH,F4JTS7_ARATH Uncharacterized protein AT4g13730 (Uncharacterized protein F18A5.120) (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein 50575,49284,45828 Uncharacterized protein AT4g13730 (Uncharacterized protein F18A5.120) (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2119435; AT4G13730 TBC1 domain family member Os01g0908100 protein (RabGAP/TBC domain-containing protein-like) (cDNA clone:J023017P18, full insert sequence),Os01g0908100 protein (Fragment) Q5N703,A0A0P0VBS7 Q5N703_ORYSJ,A0A0P0VBS7_ORYSJ Os01g0908100 B1417F08.31 OsJ_04475 OSNPB_010908100 P0456E05.4,Os01g0908100 OSNPB_010908100 ENOG411DZQB WOX9,HB-3 Q6X7J4,A0A1P8B0W7 WOX9_ARATH,A0A1P8B0W7_ARATH WUSCHEL-related homeobox 9 (Protein STIMPY),Homeobox-3 DISRUPTION PHENOTYPE: Embryonic lethality when homozygous (PubMed:17706632). Reduction in embryonic growth, failure in axillary shoot apical meristem and leaf-primordia initiation and growth, and failure in primary root growth and lateral root initiation when heterozygous (PubMed:15753038, PubMed:17706632). Wox8 and wox9 double mutants are embryo lethal, with embryos disrupted as early as the first cell division in the embryo proper (PubMed:17706632). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632}. When grown in the absence of sugars plants exhibit growth arrest after germination. Seedling lethal. Shoots exhibit reduced sensitivity to cytokinins but roots appear normal.,Hypomorphic allele identified as an intragenic supressor of stip-d activation tagged allele. Homozyous plants show about 80% seedling lethality. Other phenotypes include hyponastic cotyledon and reduced root size. Expression of WUS is reduced and the domain of STM (a marker of meristems)reduced.Heterozygotes have 25% abnormal embryos with smaller meristems. Phenotype can be rescued with the addition of sucrose in the growth media.,Activation tagged allele of STIP. Ectopic/overexpression of homeobox gene results in abnormal leaf shape loss of apcial dominance and reduced fertility due to abnormal ovule and flower development.,Small SAM and limited root growth. Seedling lethal; Small, upward-bending cotyledons; Incomplete penetrance of complete loss of primary root-D. Weigel-2005 FUNCTION: Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. MISCELLANEOUS: The seedling growth arrest phenotype of the stip mutants likely resulted from a G2 cell cycle arrest of the meristematic tissue (PubMed:17706632). Exogenous sucrose in the growth medium reactivate the stip meristems by repressing TSS and activating the expression of cell cycle regulators, and thus promoting G2 to M transition in meristematic tissues (PubMed:21185286). {ECO:0000303|PubMed:17706632, ECO:0000303|PubMed:21185286}. 42089,43343 WUSCHEL-related homeobox 9 (Protein STIMPY),Homeobox-3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of cell proliferation [GO:0008284]; regulation of meristem growth [GO:0010075]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677] DEVELOPMENTAL STAGE: First detected in the basal daughter cell of the zygote (PubMed:14711878). Unlike WOX2 and WOX8, it is not expressed in the egg cell or the zygote (PubMed:14711878). During two subsequent rounds of transverse cell divisions, it is restricted to the hypophysis (PubMed:14711878). At the 8-cell stage, it expands into the central domain of the embryo, in addition to weakening in the hypophysis (PubMed:14711878). After protoderm formation, expression in the central embryo domain is restricted to the protodermal cells and also disappears from the hypophyseal cell (PubMed:14711878). In subsequent stages, a ring of expression remains at the presumptive boundary between root and hypocotyl, at about the same position as WOX2 expression in heart stage embryos (PubMed:14711878). In addition to its embryonic expression, it is expressed postembryonically in the epidermal cells of the placenta during gynoecium development, but not in the developing ovules (PubMed:14711878). The placental expression disappears soon after fertilization (PubMed:14711878). Expression dynamics require MP and BDL, but not GN activity (PubMed:14711878). Detected as early as the first zygotic division in both the apical and the basal daughter cells (PubMed:17706632). By late globular to early transition stage, the protein is evenly distributed through out the embryo and the suspensor (PubMed:17706632). The basal half of the embryo, especially cells in the protoderm layer, starts to show slightly higher levels of expression by early heart stage (PubMed:17706632). {ECO:0000269|PubMed:14711878, ECO:0000269|PubMed:17706632}. TISSUE SPECIFICITY: Expressed in the basal cell and later at the boundary between suspensor and proembryo (PubMed:14711878). Expressed at low levels in proliferating tissues post embryonically (PubMed:15753038). Detected in vegetative shoot apical meristem, leaf primordia, floral meristems, emerging floral organs, epidermal layer of the placenta and in the upper portion of the root meristematic zone (PubMed:15753038, PubMed:20110319). {ECO:0000269|PubMed:14711878, ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:20110319}. locus:2057614; AT2G33880 sequence-specific DNA binding WUSCHEL-related homeobox 12 (OsWOX12) (Protein WOX9C),Os07g0533201 protein (Fragment),Os05g0564500 protein (Fragment) A3B6V0,A0A0P0X6W3,A0A0P0WR63 WOX12_ORYSJ,A0A0P0X6W3_ORYSJ,A0A0P0WR63_ORYSJ WOX12 Os05g0564500 LOC_Os05g48990 OsJ_018772 OSJNBb0053D02.14,Os07g0533201 OSNPB_070533201,Os05g0564500 OSNPB_050564500 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411DUAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 family protein, expressed (Os12g0443000 protein),Os11g0483000 protein (Fragment) Q2QS17,A0A0P0Y232 Q2QS17_ORYSJ,A0A0P0Y232_ORYSJ Os12g0443000 LOC_Os12g25660 Os12g0443000 OSNPB_120443000,Os11g0483000 OSNPB_110483000 ENOG411DZQD MUD12.10 Q9LUK3 Q9LUK3_ARATH Protein kinase (Protein kinase superfamily protein) 55495 Protein kinase (Protein kinase superfamily protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556] locus:2174885; AT5G40030 S_TKc NA NA NA NA NA NA NA ENOG411DZQG SCRM,SCRM2,ICE1 Q9LSE2,Q9LPW3,A0A1P8AMV9,A0A1I9LRH4,A0A1P8AMU2 ICE1_ARATH,SCRM2_ARATH,A0A1P8AMV9_ARATH,A0A1I9LRH4_ARATH,A0A1P8AMU2_ARATH Transcription factor ICE1 (Basic helix-loop-helix protein 116) (AtbHLH116) (bHLH 116) (Inducer of CBF expression 1) (Transcription factor EN 45) (Transcription factor SCREAM) (bHLH transcription factor bHLH116),Transcription factor SCREAM2 (Basic helix-loop-helix protein 33) (AtbHLH33) (bHLH 33) (Transcription factor EN 44) (bHLH transcription factor bHLH033),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein Reduction in plant chilling and freezing tolerance Abnormal stomata morphology-K. Torii-2008 FUNCTION: Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes. Binds specifically to the MYC recognition sites (5'-CANNTG-3') found in the CBF3/DREB1A promoter. Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA. {ECO:0000269|PubMed:17416732, ECO:0000269|PubMed:18641265}.,FUNCTION: Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA. {ECO:0000269|PubMed:18641265}. 53539,49796,47100,51654,35621 Transcription factor ICE1 (Basic helix-loop-helix protein 116) (AtbHLH116) (bHLH 116) (Inducer of CBF expression 1) (Transcription factor EN 45) (Transcription factor SCREAM) (bHLH transcription factor bHLH116),Transcription factor SCREAM2 (Basic helix-loop-helix protein 33) (AtbHLH33) (bHLH 33) (Transcription factor EN 44) (bHLH transcription factor bHLH033),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; response to cold [GO:0009409]; response to freezing [GO:0050826]; stomatal lineage progression [GO:0010440]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; guard mother cell differentiation [GO:0010444]; regulation of transcription, DNA-templated [GO:0006355]; response to freezing [GO:0050826]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Widely expressed in the whole plant with high expression in leaves and stem. Broad expression within stomatal cell lineages of leaf epidermis. {ECO:0000269|PubMed:18641265}.,TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. Broad expression within stomatal cell lineages of leaf epidermis, except in mature guard-cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:18641265}. locus:2090847;,locus:2010311; AT3G26744,AT1G12860 inducer of cbf expression Helix-loop-helix DNA-binding domain containing protein, expressed (Os11g0523700 protein),ABIVP1 transcription factor (Os01g0928000 protein) (Transcription factor ICE1-like) (cDNA clone:J033098G23, full insert sequence) Q2R3F6,Q5JK17 Q2R3F6_ORYSJ,Q5JK17_ORYSJ Os11g0523700 LOC_Os11g32100 Os11g0523700 OSNPB_110523700,Os01g0928000 OSJNBa0052O12.3 OSJNBa0093F16.39 OSNPB_010928000 ENOG411DZQF MIK19.5 F4K940,Q9FJS8,A0A1P8BGF9,A0A1P8BGG6,A0A1P8BGH5 F4K940_ARATH,Q9FJS8_ARATH,A0A1P8BGF9_ARATH,A0A1P8BGG6_ARATH,A0A1P8BGH5_ARATH Uncharacterized protein,At5g56850 62040,46659,61239,53877,57777 Uncharacterized protein,At5g56850 plasmodesma [GO:0009506] locus:2165111; AT5G56850 NA Os05g0232200 protein (Fragment) A0A0P0WJI6 A0A0P0WJI6_ORYSJ Os05g0232200 OSNPB_050232200 ENOG411DZQI Q6NNG9 Q6NNG9_ARATH At1g30300 (Metallo-hydrolase/oxidoreductase superfamily protein) 36476 At1g30300 (Metallo-hydrolase/oxidoreductase superfamily protein) hydrolase activity [GO:0016787] locus:2009827; AT1G30300 Inherit from euNOG: hydrolase Os12g0615500 protein (cDNA clone:J023052A05, full insert sequence) Q0ILX1 Q0ILX1_ORYSJ Os12g0615500 Os12g0615500 OSNPB_120615500 ENOG411DZQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 Os06g0509600 protein A0A0P0WXI3 A0A0P0WXI3_ORYSJ Os06g0509600 OSNPB_060509600 ENOG411DZQK ARID6,ARID5 C0SUW7,Q0WNR6,A0A1P8AN47,F4I2F0 ARID6_ARATH,ARID5_ARATH,A0A1P8AN47_ARATH,F4I2F0_ARATH AT-rich interactive domain-containing protein 6 (ARID domain-containing protein 6),AT-rich interactive domain-containing protein 5 (ARID domain-containing protein 5),ARID/BRIGHT DNA-binding domain-containing protein 44265,48040,43682,55120 AT-rich interactive domain-containing protein 6 (ARID domain-containing protein 6),AT-rich interactive domain-containing protein 5 (ARID domain-containing protein 5),ARID/BRIGHT DNA-binding domain-containing protein nucleus [GO:0005634]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; glucosinolate metabolic process [GO:0019760]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228],nucleus [GO:0005634]; DNA binding [GO:0003677],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355] locus:2037345;,locus:2011716; AT1G20910,AT1G76510 ARID BRIGHT DNA-binding domain-containing protein NA NA NA NA NA NA NA ENOG411DZQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of Os06g0548800 protein (Putative CPRD2) (cDNA clone:J023133A01, full insert sequence) Q5Z7I1 Q5Z7I1_ORYSJ Os06g0548800 Os06g0548800 OsJ_21635 OSJNBa0016D02.44 OSNPB_060548800 ENOG411DZQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain O-methyltransferase (O-methyltransferase family protein, expressed) (Os11g0307300 protein) (cDNA, clone: J043034A04, full insert sequence) Q53LW0 Q53LW0_ORYSJ Os11g0307300 LOC_Os11g20160 OSNPB_110307300 ENOG411DZQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DZQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein expressed F-box domain containing protein, expressed (Os11g0202200 protein) (cDNA clone:J023080G15, full insert sequence),F-box domain containing protein, expressed (Os11g0209200 protein),Os06g0493266 protein,F-box domain containing protein, expressed (Os11g0208400 protein) (cDNA clone:J013125D22, full insert sequence),Os11g0208600 protein,F-box domain containing protein (F-box domain, putative) (Os11g0202400 protein),Os11g0201360 protein,F-box domain containing protein, expressed (Os11g0200600 protein) (cDNA clone:J033067D24, full insert sequence),F-box domain containing protein, expressed (Os11g0208100 protein) (cDNA clone:J033050F09, full insert sequence),F-box domain containing protein, expressed (Os11g0209600 protein) (cDNA clone:J013104C16, full insert sequence),F-box domain containing protein, expressed (F-box domain, putative) (Os11g0231600 protein) (cDNA clone:J033104C13, full insert sequence),Os11g0200950 protein,Os11g0209600 protein (Fragment),Os11g0262500 protein,Os11g0201600 protein,Os11g0201299 protein,Os11g0205900 protein,Os11g0201900 protein,Os11g0202000 protein (Fragment),Os11g0202300 protein (Fragment),Os11g0209400 protein (Fragment),Os11g0202300 protein,Os11g0208300 protein,Os11g0201690 protein Q2R980,Q2R912,B9FTE3,Q0ITY2,Q0ITY1,Q53LF7,B9EVL9,Q2R9A5,Q2R926,Q2R905,Q53MC9,A0A0P0Y0C5,A0A0P0Y074,A0A0P0Y117,A0A0P0Y013,A0A0P0XZR6,A0A0P0Y083,A0A0P0XZS7,A0A0P0Y050,A0A0P0XZX4,A0A0N7KSK8,A0A0P0Y0C0,A0A0P0Y0D6,A0A0P0XZQ4,A0A0P0XZV1,A0A0P0Y034,A0A0N7KSK7 Q2R980_ORYSJ,Q2R912_ORYSJ,B9FTE3_ORYSJ,Q0ITY2_ORYSJ,Q0ITY1_ORYSJ,Q53LF7_ORYSJ,B9EVL9_ORYSJ,Q2R9A5_ORYSJ,Q2R926_ORYSJ,Q2R905_ORYSJ,Q53MC9_ORYSJ,A0A0P0Y0C5_ORYSJ,A0A0P0Y074_ORYSJ,A0A0P0Y117_ORYSJ,A0A0P0Y013_ORYSJ,A0A0P0XZR6_ORYSJ,A0A0P0Y083_ORYSJ,A0A0P0XZS7_ORYSJ,A0A0P0Y050_ORYSJ,A0A0P0XZX4_ORYSJ,A0A0N7KSK8_ORYSJ,A0A0P0Y0C0_ORYSJ,A0A0P0Y0D6_ORYSJ,A0A0P0XZQ4_ORYSJ,A0A0P0XZV1_ORYSJ,A0A0P0Y034_ORYSJ,A0A0N7KSK7_ORYSJ LOC_Os11g09670 Os11g0202200 OSNPB_110202200,Os11g0209200 LOC_Os11g10340 Os11g0209200 OSNPB_110209200,Os06g0493266 OsJ_21421 OSNPB_060493266,Os11g0208400 LOC_Os11g10240 Os11g0208400 OSNPB_110208400,Os11g0208600 Os11g0208600 OSNPB_110208600,Os11g0202400 LOC_Os11g09690 OSNPB_110202400,Os11g0201360 OsJ_01373 OSNPB_110201360,LOC_Os11g09430 Os11g0200600 OSNPB_110200600,Os11g0208100 LOC_Os11g10200 Os11g0208100 OSNPB_110208100,Os11g0209600 LOC_Os11g10400 Os11g0209600 OSNPB_110209600,Os11g0231600 LOC_Os11g12480 Os11g0231600 OSNPB_110231600,Os11g0200950 OSNPB_110200950,Os11g0209600 OSNPB_110209600,Os11g0262500 OSNPB_110262500,Os11g0201600 OSNPB_110201600,Os11g0201299 OSNPB_110201299,Os11g0205900 OSNPB_110205900,Os11g0201900 OSNPB_110201900,Os11g0202000 OSNPB_110202000,Os11g0202300 OSNPB_110202300,Os11g0209400 OSNPB_110209400,Os11g0208300 OSNPB_110208300,Os11g0201690 OSNPB_110201690 ENOG411DZQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Dof domain, zinc finger family protein, expressed (Os03g0169600 protein) (Putative H-protein promoter binding factor-2a) (Putative zinc finger DNA-binding protein) (cDNA clone:001-035-D05, full insert sequence) (cDNA clone:006-303-F03, full insert sequence) Q8S7W1 Q8S7W1_ORYSJ OSJNBa0091P11.8 LOC_Os03g07360 Os03g0169600 OsJ_09572 OSNPB_030169600 ENOG411DZQR Q9M878,Q9LF03 Q9M878_ARATH,Q9LF03_ARATH F16B3.27 protein (Transmembrane protein) (Uncharacterized protein At3g02640) (Uncharacterized protein F16B3.27),Transmembrane protein (Uncharacterized protein At5g16250) (Uncharacterized protein T21H19_170) 20382,19958 F16B3.27 protein (Transmembrane protein) (Uncharacterized protein At3g02640) (Uncharacterized protein F16B3.27),Transmembrane protein (Uncharacterized protein At5g16250) (Uncharacterized protein T21H19_170) integral component of membrane [GO:0016021] locus:2076849;,locus:2181447; AT3G02640,AT5G16250 NA OSJNBa0067K08.8 protein (Os04g0496300 protein) (cDNA clone:001-107-D12, full insert sequence) Q7XQI2 Q7XQI2_ORYSJ Os04g0496300 Os04g0496300 OSJNBa0067K08.8 OSNPB_040496300 ENOG411DZQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os03g0777700 protein (Fragment) A0A0P0W3S2,A0A0P0W481 A0A0P0W3S2_ORYSJ,A0A0P0W481_ORYSJ Os03g0777700 OSNPB_030777700 ENOG411DZQT Q8RWC0 Q8RWC0_ARATH At3g54290 (Hemerythrin HHE cation-binding domain protein) (Uncharacterized protein At3g54290) 39448 At3g54290 (Hemerythrin HHE cation-binding domain protein) (Uncharacterized protein At3g54290) locus:2080325; AT3G54290 Hemerythrin HHE cation binding domain NA NA NA NA NA NA NA ENOG411DZQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411DZQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant pleckstrin homology-like region Expressed protein (Os10g0560000 protein) (cDNA clone:J013063K07, full insert sequence),Os10g0560000 protein (Fragment) Q7XC71,A0A0P0XX53 Q7XC71_ORYSJ,A0A0P0XX53_ORYSJ OSJNBa0042H09.6 LOC_Os10g41060 Os10g0560000 OSNPB_100560000,Os10g0560000 OSNPB_100560000 ENOG411DZQY PHOS34,PHOS32 Q8L4N1,Q8VYN9,A0A1P8BH73,A0A1P8BH78 PHO34_ARATH,PHO32_ARATH,A0A1P8BH73_ARATH,A0A1P8BH78_ARATH Universal stress protein PHOS34 (Phosphorylated protein of 34 kDa) (AtPHOS34),Universal stress protein PHOS32 (Phosphorylated protein of 32 kDa) (AtPHOS32),Adenine nucleotide alpha hydrolases-like superfamily protein MISCELLANEOUS: Can bind nickel. {ECO:0000269|PubMed:18285339}. 28106,26202,26932,27724 Universal stress protein PHOS34 (Phosphorylated protein of 34 kDa) (AtPHOS34),Universal stress protein PHOS32 (Phosphorylated protein of 32 kDa) (AtPHOS32),Adenine nucleotide alpha hydrolases-like superfamily protein chloroplast [GO:0009507]; ATP binding [GO:0005524]; response to molecule of fungal origin [GO:0002238]; response to stress [GO:0006950],chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; response to molecule of fungal origin [GO:0002238]; response to stress [GO:0006950],hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2131719;,locus:2147319; AT4G27320,AT5G54430 Universal stress protein family NA NA NA NA NA NA NA ENOG411DZQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os08g0426866 protein A0A0P0XFY4 A0A0P0XFY4_ORYSJ Os08g0426866 OSNPB_080426866 ENOG411DZQZ Q9ASU6 Q9ASU6_ARATH At1g42440/F7F22_7 (Pre-rRNA-processing TSR1-like protein) (Uncharacterized protein At1g42440) 89456 At1g42440/F7F22_7 (Pre-rRNA-processing TSR1-like protein) (Uncharacterized protein At1g42440) nucleus [GO:0005634]; preribosome, small subunit precursor [GO:0030688]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; U3 snoRNA binding [GO:0034511]; endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000479]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2035893; AT1G42440 pre-rRNA-processing protein TSR1 Expressed protein (LOC495115 protein, putative, expressed) (Os11g0298400 protein) (cDNA clone:J013157I04, full insert sequence) Q53MQ7 Q53MQ7_ORYSJ Os11g0298400 LOC_Os11g19250 Os11g0298400 OSNPB_110298400 ENOG411DUAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Aspartic proteinase nepenthesin II-like (Os06g0717900 protein) Q5Z8N8,Q5Z8N9 Q5Z8N8_ORYSJ,Q5Z8N9_ORYSJ P0541C02.19-1 Os06g0717900 OSNPB_060717900,P0541C02.19-2 Os06g0717900 OsJ_22678 OSNPB_060717900 ENOG411E5MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) DNA-binding family protein, putative, expressed (Os03g0105700 protein) Q10T05 Q10T05_ORYSJ Os03g0105700 LOC_Os03g01540 Os03g0105700 OsJ_09085 OSNPB_030105700 ENOG411DUAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C5HC2 zinc finger Lysine-specific demethylase JMJ706 (EC 1.14.11.-) (Jumonji domain-containing protein 706) (Lysine-specific histone demethylase JMJ706) (Protein JUMONJI 706),Os02g0696700 protein (Fragment) Q336N8,Q0DYF8 JM706_ORYSJ,Q0DYF8_ORYSJ JMJ706 Os10g0577600 LOC_Os10g42690 OSJNBa0035H01.2,Os02g0696700 Os02g0696700 OSNPB_020696700 DISRUPTION PHENOTYPE: Defects in spikelet morphology, including floral organ numbers, depletion of lemma and/or palea (Fig. 4D), increased numbers of stamens and pistils. {ECO:0000269|PubMed:18765808}. FUNCTION: Histone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me3 and H3K9me2. No activity on H3K4me3, H3K9me1, H3K27me2 and H3K36me3/2. Involved in the control of floral organ development by demethylating H3K9me3 and H3K9me2 in the promoter regions of DH1 and MADS47. The 'Lys-9' demethylation of these two genes is required for induction of their expression. {ECO:0000269|PubMed:18765808}. ENOG411EAF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411DQ12 AMT2 Q9M6N7 AMT2_ARATH Ammonium transporter 2 (AtAMT2) This mutant was used to construct a quadruple mutant: amt1;1-1 amt1;2-1 amt1;3-1 amt2;1-1. When this qko (quadruple knockout) was compared with a triple knockout with WT AMT2;1 it provided little evidence for a role of AMT2;1 in ammonium uptake in Arabidopsis roots. FUNCTION: High affinity ammonium transporter that may play an important role in moving ammonium between the apoplast and symplast of cells throughout the plant. Does not transport methylammonium. {ECO:0000269|PubMed:12481062}. 50768 Ammonium transporter 2 (AtAMT2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; high-affinity secondary active ammonium transmembrane transporter activity [GO:0015398]; ammonium transport [GO:0015696]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Higher expression in shoots than roots. {ECO:0000269|PubMed:12481062}. locus:2042917; AT2G38290 Ammonium Transporter Ammonium transporter 2 member 1 (OsAMT2;1),Ammonium transporter 2 member 2 (OsAMT2;2),Ammonium transporter 3 member 1 (OsAMT3;1),Ammonium transporter 2 member 3 (OsAMT2;3),Ammonium transporter 2, putative (Os11g0105300 protein),Ammonium transporter,Os01g0831300 protein Q84KJ7,Q8S230,Q84KJ6,Q8S233,Q2RBN4,A0A0P0VA46,A0A0N7KE03 AMT21_ORYSJ,AMT22_ORYSJ,AMT31_ORYSJ,AMT23_ORYSJ,Q2RBN4_ORYSJ,A0A0P0VA46_ORYSJ,A0A0N7KE03_ORYSJ AMT2-1 Os05g0468700 LOC_Os05g39240 OJ1058_C01.9,AMT2-2 Os01g0831900 LOC_Os01g61550 OsJ_03963 P0446G04.40,AMT3-1 Os01g0870300 LOC_Os01g65000 OsJ_04233,AMT2-3 Os01g0831300 LOC_Os01g61510 OsJ_03961 P0446G04.35,Os11g0105300 LOC_Os11g01410 OsJ_34913 OSNPB_110105300,Os01g0831900 OSNPB_010831900,Os01g0831300 OSNPB_010831300 FUNCTION: Involved in ammonium transport. {ECO:0000269|PubMed:12610225}.,FUNCTION: Involved in ammonium transport. {ECO:0000250}. ENOG411DQ13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os05g0478300 protein (Fragment) A0A0N7KKZ0 A0A0N7KKZ0_ORYSJ Os05g0478300 OSNPB_050478300 ENOG411DQ10 Q9FIN8,A0A1P8BGD5 Q9FIN8_ARATH,A0A1P8BGD5_ARATH 3'-5' exonuclease domain-containing protein (At5g24340) (Uncharacterized protein At5g24340),3'-5' exonuclease domain-containing protein reduced H3K27me1 in vivo; partial heterochromatin decondensation; transcriptional activation of repressed heterochromatic elements 57703,58949 3'-5' exonuclease domain-containing protein (At5g24340) (Uncharacterized protein At5g24340),3'-5' exonuclease domain-containing protein 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676] locus:2152871; AT5G24340 exonuclease Os07g0452400 protein Q0D6Q9 Q0D6Q9_ORYSJ Os07g0452400 Os07g0452400 OSNPB_070452400 ENOG411DQ11 VHA-a2,VHA-a3 Q9SJT7,Q8W4S4 VHAA2_ARATH,VHAA3_ARATH V-type proton ATPase subunit a2 (V-ATPase subunit a2) (V-type proton ATPase 95 kDa subunit a isoform 2) (V-ATPase 95 kDa isoform a2) (Vacuolar H(+)-ATPase subunit a isoform 2) (Vacuolar proton pump subunit a2) (Vacuolar proton translocating ATPase 95 kDa subunit a isoform 2),V-type proton ATPase subunit a3 (V-ATPase subunit a3) (V-type proton ATPase 95 kDa subunit a isoform 3) (V-ATPase 95 kDa isoform a3) (Vacuolar H(+)-ATPase subunit a isoform 3) (Vacuolar proton pump subunit a3) (Vacuolar proton translocating ATPase 95 kDa subunit a isoform 3) DISRUPTION PHENOTYPE: When associated with VHA-a3 disruption, day-length-dependent growth retardation associated with a reduced accumulation and storage of nitrate ions in vacuoles. Increased sensitivity to zinc ions due to a lower zinc ions sequestration in vacuoles. Reduced calcium content. No effect on sensitivity to sodium ions. {ECO:0000269|PubMed:20133698}.,DISRUPTION PHENOTYPE: When associated with VHA-a2 disruption, day-length-dependent growth retardation associated with a reduced accumulation and storage of nitrate ions in vacuoles. Increased sensitivity to zinc ions due to a lower zinc ions sequestration in vacuoles. Reduced calcium content. No effect on sensitivity to sodium ions. {ECO:0000269|PubMed:18441211, ECO:0000269|PubMed:20133698}. No tonoplast V-AtPase activity. Severely reduced rosette size. pH shifted to pH 6.4 in double mutants from 5.9 in WT. Reduced leaf growth under short- and long-day conditions is accompanied by varying degrees of leaf tip and flower necrosis. Calcium content in leaf extracts of vha-a2 vha-a3 plants grown in soil under LD conditions was >2-fold lower than in WT plants. In the presence of increasing external concentrations of NaCl neither growth inhibition nor accumulation of sodium potassium and chloride was significantly different from WT. FUNCTION: Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Involved in vacuolar nutrient storage (e.g. accumulation and storage of nitrate) and in tolerance to some toxic ions (e.g. zinc ions sequestration in vacuoles). {ECO:0000269|PubMed:20133698}. R-ATH-1222556;R-ATH-6798695;R-ATH-77387;R-ATH-917977; 93106,92833 V-type proton ATPase subunit a2 (V-ATPase subunit a2) (V-type proton ATPase 95 kDa subunit a isoform 2) (V-ATPase 95 kDa isoform a2) (Vacuolar H(+)-ATPase subunit a isoform 2) (Vacuolar proton pump subunit a2) (Vacuolar proton translocating ATPase 95 kDa subunit a isoform 2),V-type proton ATPase subunit a3 (V-ATPase subunit a3) (V-type proton ATPase 95 kDa subunit a isoform 3) (V-ATPase 95 kDa isoform a3) (Vacuolar H(+)-ATPase subunit a isoform 3) (Vacuolar proton pump subunit a3) (Vacuolar proton translocating ATPase 95 kDa subunit a isoform 3) chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuole [GO:0005773]; ATPase binding [GO:0051117]; hydrogen-translocating pyrophosphatase activity [GO:0009678]; nutrient reservoir activity [GO:0045735]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP synthesis coupled proton transport [GO:0015986]; sequestering of zinc ion [GO:0032119]; vacuolar acidification [GO:0007035]; vacuolar proton-transporting V-type ATPase complex assembly [GO:0070072]; vacuolar sequestering [GO:0043181],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuole [GO:0005773]; ATPase binding [GO:0051117]; hydrogen-translocating pyrophosphatase activity [GO:0009678]; nutrient reservoir activity [GO:0045735]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP synthesis coupled proton transport [GO:0015986]; sequestering of zinc ion [GO:0032119]; vacuolar acidification [GO:0007035]; vacuolar proton-transporting V-type ATPase complex assembly [GO:0070072]; vacuolar sequestering [GO:0043181] TISSUE SPECIFICITY: Expressed in etiolated seedlings hypocotyls. {ECO:0000269|PubMed:18441211}. locus:2050085;,locus:2120217; AT2G21410,AT4G39080 vacuolar proton V-type proton ATPase subunit a,V-type proton ATPase subunit a (Fragment) Q10P12,Q0IYP2 Q10P12_ORYSJ,Q0IYP2_ORYSJ Os03g0251500 LOC_Os03g14690 Os03g0251500 OsJ_10160 OSNPB_030251500,Os10g0184300 OSNPB_100184300 FUNCTION: Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. {ECO:0000256|RuleBase:RU361189}. ENOG411DQ16 RLP51,RLP55 Q9SN38,Q9FK66 RLP51_ARATH,RLP55_ARATH Receptor-like protein 51 (AtRLP51) (Protein PUTATIVE DEVELOPMENTAL ORTHOLOG 1) (AtPDO1) (Protein SUPPRESSOR OF NPR1-1, CONSTITUTIVE 2),Receptor-like protein 55 (AtRLP55) (Protein SUPPRESSOR OF NPR1-1, CONSTITUTIVE 3) DISRUPTION PHENOTYPE: In snc2-5 and snc2-8 mutants, impaired basal resistance to P.syringae pv. tomato DC3000 leading to increased susceptibility. {ECO:0000269|PubMed:20841424}. FUNCTION: Involved in plant defense. Required for basal resistance against P.syringae pv. tomato DC3000. {ECO:0000269|PubMed:20841424}.,FUNCTION: Involved in plant defense. {ECO:0000269|PubMed:20841424}. 46071,47174 Receptor-like protein 51 (AtRLP51) (Protein PUTATIVE DEVELOPMENTAL ORTHOLOG 1) (AtPDO1) (Protein SUPPRESSOR OF NPR1-1, CONSTITUTIVE 2),Receptor-like protein 55 (AtRLP55) (Protein SUPPRESSOR OF NPR1-1, CONSTITUTIVE 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; defense response [GO:0006952]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of defense response to oomycetes [GO:1902290]; regulation of defense response [GO:0031347]; response to bacterium [GO:0009617],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; defense response [GO:0006952]; regulation of defense response [GO:0031347] locus:2124147;,locus:2171963; AT4G18760,AT5G45770 Leucine Rich Repeat Os01g0750400 protein A0A0P0V8C0 A0A0P0V8C0_ORYSJ Os01g0750400 OSNPB_010750400 ENOG411DQ17 Q683D4 Q683D4_ARATH Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (At5g15750) (Ribosomal protein-like) R-ATH-6791226; 21767 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (At5g15750) (Ribosomal protein-like) cytosolic small ribosomal subunit [GO:0022627]; Mpp10 complex [GO:0034457]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; rRNA processing [GO:0006364] locus:2143196; AT5G15750 U3 small nucleolar ribonucleoprotein protein Os04g0662100 protein (Fragment) A0A0P0WG07 A0A0P0WG07_ORYSJ Os04g0662100 OSNPB_040662100 ENOG411DQ14 Q9LUN3,Q9ZT98,F4I0W7 Q9LUN3_ARATH,Q9ZT98_ARATH,F4I0W7_ARATH Leucine-rich repeat (LRR) family protein (Leucine-rich repeat disease resistance protein-like),Leucine-rich repeat family protein (Putative leucine-rich repeat protein) (RNI-like superfamily protein),Leucine-rich repeat (LRR) family protein 42920,43507,43594 Leucine-rich repeat (LRR) family protein (Leucine-rich repeat disease resistance protein-like),Leucine-rich repeat family protein (Putative leucine-rich repeat protein) (RNI-like superfamily protein),Leucine-rich repeat (LRR) family protein locus:2090472;,locus:2139320;,locus:2020733; AT3G17640,AT4G03010,AT1G03440 leucine-rich repeat family protein Leucine-rich repeat family protein-like (Os06g0478600 protein) (cDNA clone:001-009-F01, full insert sequence) (cDNA clone:002-100-B12, full insert sequence),Os05g0406800 protein (cDNA clone:J013060B14, full insert sequence) Q69TP3,Q6L550 Q69TP3_ORYSJ,Q6L550_ORYSJ Os06g0478600 Os06g0478600 OsJ_21360 OSJNBa0031P18.38 OSNPB_060478600 P0618D11.3,Os05g0406800 OJ1657_H11.5 OSNPB_050406800 ENOG411DQ15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411DQ18 TMN10,TMN6,TMN8,TMN7,TMN9 Q8RWW1,Q9C720,F4KIB2,Q9LIC2,Q9C5N2,A0A1P8AYX1,F4KIM7 TMN10_ARATH,TMN6_ARATH,TMN8_ARATH,TMN7_ARATH,TMN9_ARATH,A0A1P8AYX1_ARATH,F4KIM7_ARATH Transmembrane 9 superfamily member 10 (Endomembrane protein 3) (Transmembrane nine protein 10) (AtTMN10),Transmembrane 9 superfamily member 6 (Endomembrane protein 4) (Transmembrane nine protein 6) (AtTMN6),Transmembrane 9 superfamily member 8 (Endomembrane protein 1) (Transmembrane nine protein 8) (AtTMN8),Transmembrane 9 superfamily member 7 (Endomembrane protein 5) (Transmembrane nine protein 7) (AtTMN7),Transmembrane 9 superfamily member 9 (Endomembrane protein 2) (Transmembrane nine protein 9) (AtTMN9),Transmembrane 9 superfamily member FUNCTION: May play a role as effector of cellular copper homeostasis. {ECO:0000269|PubMed:20681974}. 73352,73623,74467,74234,74120,51530,74836 Transmembrane 9 superfamily member 10 (Endomembrane protein 3) (Transmembrane nine protein 10) (AtTMN10),Transmembrane 9 superfamily member 6 (Endomembrane protein 4) (Transmembrane nine protein 6) (AtTMN6),Transmembrane 9 superfamily member 8 (Endomembrane protein 1) (Transmembrane nine protein 8) (AtTMN8),Transmembrane 9 superfamily member 7 (Endomembrane protein 5) (Transmembrane nine protein 7) (AtTMN7),Transmembrane 9 superfamily member 9 (Endomembrane protein 2) (Transmembrane nine protein 9) (AtTMN9),Transmembrane 9 superfamily member endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021],endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802],endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774],cytoplasm [GO:0005737]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; cellular copper ion homeostasis [GO:0006878]; cellular zinc ion homeostasis [GO:0006882]; ion transport [GO:0006811],endosome membrane [GO:0010008]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021],endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802] TISSUE SPECIFICITY: Ubiquitous but weakly expressed in flowers and stems. {ECO:0000269|PubMed:20681974}.,TISSUE SPECIFICITY: Ubiquitous. Highly expressed in the root elongation zone. {ECO:0000269|PubMed:20681974}. locus:2047565;,locus:2205682;,locus:2183710;,locus:2091561;,locus:2179250; AT2G24170,AT1G55130,AT5G10840,AT3G13772,AT5G25100 transmembrane 9 superfamily member Transmembrane 9 superfamily member,Transmembrane 9 superfamily member (Fragment) Q0J3T4,B7FAI5,Q0DBF8,Q67UQ9,A0A0P0XK31,A0A0P0XDY8,A0A0N7KQA0,A0A0P0XQB2,A0A0P0XJ84 Q0J3T4_ORYSJ,B7FAI5_ORYSJ,Q0DBF8_ORYSJ,Q67UQ9_ORYSJ,A0A0P0XK31_ORYSJ,A0A0P0XDY8_ORYSJ,A0A0N7KQA0_ORYSJ,A0A0P0XQB2_ORYSJ,A0A0P0XJ84_ORYSJ Os08g0554900 Os08g0554900 OSNPB_080554900,Os08g0555200 OSNPB_080555200,Os06g0568000 Os06g0568000 OSNPB_060568000,Os06g0650600 OSNPB_060650600 P0453H04.29,Os08g0555300 OSNPB_080555300,Os08g0276000 OSNPB_080276000,Os08g0554900 OSNPB_080554900,Os09g0557800 OSNPB_090557800,Os08g0555000 OSNPB_080555000 ENOG411DQ19 OPR1,OPR2 P0DI08,Q8LAH7,Q8GYB8,Q8GYA3,P0DI09,A0A1P8AT55,F4I403,F4I949 ORL2A_ARATH,OPR1_ARATH,OPR2_ARATH,OPRL1_ARATH,ORL2B_ARATH,A0A1P8AT55_ARATH,F4I403_ARATH,F4I949_ARATH Putative 12-oxophytodienoate reductase-like protein 2A (EC 1.3.1.-),12-oxophytodienoate reductase 1 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 1) (AtOPR1) (OPDA-reductase 1) (FS-AT-I),12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 2) (AtOPR2) (OPDA-reductase 2),Putative 12-oxophytodienoate reductase-like protein 1 (EC 1.3.1.-),Putative 12-oxophytodienoate reductase-like protein 2B (EC 1.3.1.-),FMN-linked oxidoreductases superfamily protein,12-oxophytodienoate reductase 1 FUNCTION: Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}.,FUNCTION: Specifically cleaves olefinic bonds in alpha,beta-unsaturated carbonyls and may be involved in detoxification or modification of these reactive compounds. May be involved in the biosynthesis or metabolism of oxylipin signaling molecules. In vitro, reduces 9R,13R-12-oxophyodienoic acid (9R,13R-OPDA) to 9R,13R-OPC-8:0, but only poorly 9S,13S-OPDA, the natural precursor of jasmonic acid. Can detoxify the explosive 2,4,6-trinitrotoluene (TNT) in vitro and in vivo by catalyzing its nitroreduction to form hydroxylamino-dinitrotoluene (HADNT). {ECO:0000269|PubMed:19605548}. PATHWAY: Lipid metabolism; oxylipin biosynthesis. ARA:AT1G76680-MONOMER;,ARA:AT1G76690-MONOMER;,ARA:AT1G09400-MONOMER; 1.3.1.42; 1.3.1.-,1.3.1.42 29973,41168,41567,36413,29829,44015,29123 Putative 12-oxophytodienoate reductase-like protein 2A (EC 1.3.1.-),12-oxophytodienoate reductase 1 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 1) (AtOPR1) (OPDA-reductase 1) (FS-AT-I),12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 2) (AtOPR2) (OPDA-reductase 2),Putative 12-oxophytodienoate reductase-like protein 1 (EC 1.3.1.-),Putative 12-oxophytodienoate reductase-like protein 2B (EC 1.3.1.-),FMN-linked oxidoreductases superfamily protein,12-oxophytodienoate reductase 1 intracellular [GO:0005622]; FMN binding [GO:0010181]; oxidoreductase activity [GO:0016491]; oxidation-reduction process [GO:0055114],cytoplasm [GO:0005737]; 12-oxophytodienoate reductase activity [GO:0016629]; FMN binding [GO:0010181]; oxylipin biosynthetic process [GO:0031408],cytoplasm [GO:0005737]; intracellular [GO:0005622]; 12-oxophytodienoate reductase activity [GO:0016629]; FMN binding [GO:0010181]; oxidation-reduction process [GO:0055114]; oxylipin biosynthetic process [GO:0031408]; response to wounding [GO:0009611],FMN binding [GO:0010181]; oxidoreductase activity [GO:0016491],cytosol [GO:0005829]; 12-oxophytodienoate reductase activity [GO:0016629]; FMN binding [GO:0010181]; lipid metabolic process [GO:0006629]; oxylipin metabolic process [GO:0031407]; response to cadmium ion [GO:0046686]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611] DEVELOPMENTAL STAGE: Expressed during leaves senescence, seeds development, and siliques maturation.,DEVELOPMENTAL STAGE: Expressed during late steps of pollen development. {ECO:0000269|PubMed:10333582}. TISSUE SPECIFICITY: Mostly expressed in roots, also present in leaves, shoots and flowers. More abundant in cotyledons. In more details, expressed in peduncles, sepals, petals, around the abscission zone of siliques, maturing siliques and developing seeds. {ECO:0000269|PubMed:10333582}.,TISSUE SPECIFICITY: Expressed at highest levels in roots and cotyledons, and at lower levels in leaves, shoots and flowers (sepals, petals, maturing siliques and developing pollen). {ECO:0000269|PubMed:10333582}. locus:2030948;,locus:2030096;,locus:2012285;,locus:1005716725;,locus:2030086; AT1G17990,AT1G76680,AT1G76690,AT1G09400,AT1G18020 12-oxophytodienoate reductase 12-oxophytodienoate reductase 1 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (OsOPR1),Putative 12-oxophytodienoate reductase 9 (EC 1.3.1.-) (OPDA-reductase 9) (OsOPR9),Putative 12-oxophytodienoate reductase 11 (EC 1.3.1.-) (OPDA-reductase 11) (OsOPR11),Putative 12-oxophytodienoate reductase 2 (EC 1.3.1.-) (OPDA-reductase 2) (OsOPR2),Putative 12-oxophytodienoate reductase 3 (EC 1.3.1.-) (OPDA-reductase 3) (OsOPR3),Putative 12-oxophytodienoate reductase 4 (EC 1.3.1.-) (OPDA-reductase 4) (OsOPR4),Os06g0216000 protein (Os06g0216100 protein),Os06g0215900 protein,Os06g0216300 protein Q84QK0,Q5ZC83,B9FSC8,Q69TH4,Q69TH6,Q69TH8,C7J3D0,A0A0P0WU39,A0A0P0WTZ2 OPR1_ORYSJ,OPR9_ORYSJ,OPR11_ORYSJ,OPR2_ORYSJ,OPR3_ORYSJ,OPR4_ORYSJ,C7J3D0_ORYSJ,A0A0P0WU39_ORYSJ,A0A0P0WTZ2_ORYSJ OPR1 OPDA OPDA2 OPDAR1 OPR11 OPR2 RRJ4 Os06g0216300 LOC_Os06g11290 OsJ_20595 OSJNBb0024N18.13 P0537F07.35,OPR9 Os01g0370000 LOC_Os01g27240 P0043B10.48 P0493G01.8,OPR11 OPR3 OsJ_20711,OPR2 Os06g0216200 LOC_Os06g11280 OsJ_20594 OSJNBb0024N18.12 P0537F07.34,OPR3 Os06g0216000 LOC_Os06g11260 OSJNBb0024N18.10 P0537F07.32,OPR4 OPR10 Os06g0215900 LOC_Os06g11240 OsJ_20592 OSJNBb0024N18.8 P0537F07.30,Os06g0216000 Os06g0216100 OSNPB_060216000,Os06g0215900 OSNPB_060215900,Os06g0216300 OSNPB_060216300 FUNCTION: Probably involved in the biosynthesis or metabolism of oxylipin signaling molecules. In vitro, reduces cis(-)-12-oxophytodienoic acid (cis(-)-OPDA) and to cis(-)-OPC-8:0. {ECO:0000269|PubMed:12569412, ECO:0000269|PubMed:17938955}.,FUNCTION: Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}. ENOG411DQ1B F21O3.11 Q9SRS6 Q9SRS6_ARATH F21O3.11 protein (Lipase class 3 family protein) 110859 F21O3.11 protein (Lipase class 3 family protein) integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2079616; AT3G07400 Lipase class 3 family protein Os02g0481700 protein (Fragment) Q0E172 Q0E172_ORYSJ Os02g0481700 Os02g0481700 OSNPB_020481700 ENOG411DQ1C SCPL23,SCPL25,SCPL22,SCPL24,scpl23 O82229,Q8L9Y0,Q1PF08,Q9M099,A0A1P8B146,A0A1P8B149,A0A1P8B140 SCP23_ARATH,SCP25_ARATH,SCP22_ARATH,SCP24_ARATH,A0A1P8B146_ARATH,A0A1P8B149_ARATH,A0A1P8B140_ARATH Putative serine carboxypeptidase-like 23 (EC 3.4.16.-),Serine carboxypeptidase-like 25 (EC 3.4.16.-),Serine carboxypeptidase-like 22 (EC 3.4.16.-),Serine carboxypeptidase 24 (EC 3.4.16.6) (Bri1 suppressor 1) (Carboxypeptidase D) (Serine carboxypeptidase II) [Cleaved into: Serine carboxypeptidase 24 chain A (Serine carboxypeptidase II chain A); Serine carboxypeptidase 24 chain B (Serine carboxypeptidase II chain B)],Carboxypeptidase (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}.,FUNCTION: Active serine carboxypeptidase with broad substrate preference, including basic and hydrophilic groups. Processes a protein involved in an early event in the brassinosteroid signaling pathway. {ECO:0000269|PubMed:11320207, ECO:0000269|PubMed:16123046}. MISCELLANEOUS: Was isolated as a suppressor of bri1 mutant phenotype. The serine carboxypeptidase activity is necessary for suppression of bri1 mutant phenotype. R-ATH-6798695; 3.4.16.-,3.4.16.6 51528,53401,53106,52845,41007,53318,53185 Putative serine carboxypeptidase-like 23 (EC 3.4.16.-),Serine carboxypeptidase-like 25 (EC 3.4.16.-),Serine carboxypeptidase-like 22 (EC 3.4.16.-),Serine carboxypeptidase 24 (EC 3.4.16.6) (Bri1 suppressor 1) (Carboxypeptidase D) (Serine carboxypeptidase II) [Cleaved into: Serine carboxypeptidase 24 chain A (Serine carboxypeptidase II chain A); Serine carboxypeptidase 24 chain B (Serine carboxypeptidase II chain B)],Carboxypeptidase (EC 3.4.16.-) extracellular space [GO:0005615]; serine-type carboxypeptidase activity [GO:0004185]; brassinosteroid mediated signaling pathway [GO:0009742]; proteolysis involved in cellular protein catabolic process [GO:0051603],extracellular space [GO:0005615]; serine-type carboxypeptidase activity [GO:0004185]; brassinosteroid mediated signaling pathway [GO:0009742]; proteolysis [GO:0006508]; proteolysis involved in cellular protein catabolic process [GO:0051603],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expression not detected.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expression not detected. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in shoots, leaves, cauline leaves, siliques and flowers. Expressed a low levels in roots and stems. {ECO:0000269|PubMed:15908604, ECO:0000269|PubMed:16123046}. locus:2078598;,locus:2061436;,locus:2118706; AT2G24010,AT3G02110,AT2G24000,AT4G30610 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-) Q6K673,Q6K671,Q6K672 Q6K673_ORYSJ,Q6K671_ORYSJ,Q6K672_ORYSJ P0700F06.34-1 Os02g0794500 OJ1695_H09.2-1 OsJ_08702 OSNPB_020794500,P0700F06.34-3 Os02g0794500 OJ1695_H09.2-3 OSNPB_020794500,P0700F06.34-2 Os02g0794500 OJ1695_H09.2-2 OSNPB_020794500 ENOG411DQ1A PER1 O04005 REHY_ARATH 1-Cys peroxiredoxin PER1 (EC 1.11.1.15) (Rehydrin homolog) (Thioredoxin peroxidase) FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively (By similarity). Seems to contribute to the inhibition of germination during stress (PubMed:14526116). {ECO:0000250|UniProtKB:P30041, ECO:0000269|PubMed:14526116}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. {ECO:0000250|UniProtKB:O35244}. ARA:AT1G48130-MONOMER; R-ATH-6798695; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.15 24081 1-Cys peroxiredoxin PER1 (EC 1.11.1.15) (Rehydrin homolog) (Thioredoxin peroxidase) cytoplasm [GO:0005737]; nucleus [GO:0005634]; thioredoxin peroxidase activity [GO:0008379]; cell redox homeostasis [GO:0045454]; maintenance of seed dormancy [GO:0010231]; response to desiccation [GO:0009269] DEVELOPMENTAL STAGE: Expressed during the late globular stage and late torpedo stage of the embryo, and in distinct cells of unfertilized and fertilized ovules. {ECO:0000269|PubMed:14750521}. TISSUE SPECIFICITY: Predominantly expressed in seed. Expressed in endosperm, embryo and aleurone cells. Also detected in young seedlings, abscission zones, stem branching points. {ECO:0000269|PubMed:14750521, ECO:0000269|PubMed:9580097}. locus:2023772; AT1G48130 Antioxidant protein that seems to contribute to the inhibition of germination during stress 1-Cys peroxiredoxin B (1-Cys Prx B) (EC 1.11.1.15) (Thioredoxin peroxidase B),1-Cys peroxiredoxin A (1-Cys Prx A) (EC 1.11.1.15) (Protein RAB24) (Rice 1Cys-peroxiredoxin) (R1C-Prx) (Thioredoxin peroxidase A) P0C5D1,P0C5C9 REHYB_ORYSJ,REHYA_ORYSJ Os07g0638400 LOC_Os07g44440 OJ1340_C08.108 OsJ_024298,Os07g0638300 LOC_Os07g44430 OJ1340_C08.107 OsJ_024297 FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively (By similarity). Seems to contribute to the inhibition of germination during stress (By similarity). {ECO:0000250|UniProtKB:O04005, ECO:0000250|UniProtKB:P30041}.,FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively (By similarity). Seems to contribute to the inhibition of germination during stress (PubMed:11113447). {ECO:0000250|UniProtKB:O04005, ECO:0000269|PubMed:11113447}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. {ECO:0000250|UniProtKB:O35244}. ENOG411DQ1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dienelactone hydrolase family Os05g0429500 protein (Fragment),Os01g0324600 protein,Os08g0410851 protein A0A0P0WMJ3,A0A0P0V246,A0A0P0XFP1 A0A0P0WMJ3_ORYSJ,A0A0P0V246_ORYSJ,A0A0P0XFP1_ORYSJ Os05g0429500 OSNPB_050429500,Os01g0324600 OSNPB_010324600,Os08g0410851 OSNPB_080410851 ENOG411DQ1G LRR XI-23 Q8W4B5,F4I2N7 Q8W4B5_ARATH,F4I2N7_ARATH Leucine-rich receptor-like protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein At1g09970; F21M12.36),Leucine-rich receptor-like protein kinase family protein T-DNA insertion lines showed a slight but statistically significant delay in germination and was more sensitive to oxidative stress. Delayed germination; Sensitive to hydrogen peroxide-E. Lasserre-2010 FUNCTION: Plays a role in pattern-triggered immunity (PTI) signaling induced by pathogen-associated molecular patterns (PAMPs). Acts as a receptor for PIP1 defense peptide. PIP1 is an endogenous secreted peptide that acts as elicitor of immune response and positive regulator of defense response (PubMed:25188390). Involved in the control of seed germination speed, in tolerance to oxidative stress and in maintaining seed longevity (PubMed:20811905). {ECO:0000269|PubMed:20811905, ECO:0000269|PubMed:25188390}. 107379,107450 Leucine-rich receptor-like protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein At1g09970; F21M12.36),Leucine-rich receptor-like protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein autophosphorylation [GO:0046777]; response to oxidative stress [GO:0006979]; seed germination [GO:0009845] locus:2024432; AT1G09970 receptor-like protein kinase Expressed protein (Os11g0540500 protein),Os12g0632800 protein Q2R325,A0A0P0YE31 Q2R325_ORYSJ,A0A0P0YE31_ORYSJ Os11g0540500 LOC_Os11g33380 OsJ_34159 OSNPB_110540500,Os12g0632800 OSNPB_120632800 ENOG411DQ1D Q9LFC5,A0A1P8BGD3 PP360_ARATH,A0A1P8BGD3_ARATH Pentatricopeptide repeat-containing protein At5g01110,Tetratricopeptide repeat (TPR)-like superfamily protein 81881,85194 Pentatricopeptide repeat-containing protein At5g01110,Tetratricopeptide repeat (TPR)-like superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial translation [GO:0032543]; RNA modification [GO:0009451] locus:2150024; AT5G01110 Pentatricopeptide repeat-containing protein Os03g0165100 protein A0A0P0VTQ9 A0A0P0VTQ9_ORYSJ Os03g0165100 OSNPB_030165100 ENOG411DQ1E DGS1 Q8GUK1,A0A1P8BBA3 DGS1_ARATH,A0A1P8BBA3_ARATH Protein DGS1, mitochondrial (Protein DGD1 SUPPRESSOR 1),Dgd1 suppressor 1 FUNCTION: Involved in galactoglycerolipid biosynthesis. May contribute to an intracellular signal that regulates an alternative DGD1-independent galactoglycerolipid biosynthesis pathway in chloroplasts. {ECO:0000269|PubMed:18208519}. 68894,60442 Protein DGS1, mitochondrial (Protein DGD1 SUPPRESSOR 1),Dgd1 suppressor 1 integral component of membrane [GO:0016021]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; protein complex [GO:0043234]; galactolipid biosynthetic process [GO:0019375]; hydrogen peroxide biosynthetic process [GO:0050665],integral component of membrane [GO:0016021] locus:505006597; AT5G12290 ATP synthase regulation protein NCA2 Os03g0377500 protein (Fragment),Os03g0377500 protein,Os03g0377300 protein,Os03g0356470 protein A0A0P0VYT9,A0A0P0VXZ8,A0A0P0VY19,A0A0P0VXJ0 A0A0P0VYT9_ORYSJ,A0A0P0VXZ8_ORYSJ,A0A0P0VY19_ORYSJ,A0A0P0VXJ0_ORYSJ Os03g0377500 OSNPB_030377500,Os03g0377300 OSNPB_030377300,Os03g0356470 OSNPB_030356470 ENOG411DQ1J ICR2,ICR3,RIP5,RIP2 Q9ZQC5,Q9LSS5,A0A1P8BH66,A0A1P8AZ83 ICR2_ARATH,ICR3_ARATH,A0A1P8BH66_ARATH,A0A1P8AZ83_ARATH Interactor of constitutive active ROPs 2, chloroplastic (ROP-interactive partner 2),Interactor of constitutive active ROPs 3 (ROP-interactive partner 5),ROP interactive partner 5,ROP interactive partner 3 FUNCTION: Acts as a scaffold, mediating interaction of ROPs with different proteins. {ECO:0000250}. 65858,63712,66577,65616 Interactor of constitutive active ROPs 2, chloroplastic (ROP-interactive partner 2),Interactor of constitutive active ROPs 3 (ROP-interactive partner 5),ROP interactive partner 5,ROP interactive partner 3 chloroplast [GO:0009507],plasma membrane [GO:0005886] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:15010618}. locus:2061758;,locus:2144040; AT2G37080,AT5G60210 Interactor of constitutive active ROPs Os05g0122600 protein Q75L89,A0A0P0WHB1 Q75L89_ORYSJ,A0A0P0WHB1_ORYSJ Os05g0122600 Os05g0122600 OJ1729_E02.5 OSNPB_050122600,Os05g0122600 OSNPB_050122600 ENOG411DQ1H F4JPD9 F4JPD9_ARATH Pleckstrin homology (PH) domain-containing protein R-ATH-499943;R-ATH-6798695; 28034 Pleckstrin homology (PH) domain-containing protein locus:1006230394; AT4G23895 PH Os05g0595500 protein Q5KQH1 Q5KQH1_ORYSJ Os05g0595500 OsJ_19781 OSJNBb0086G17.4 OSNPB_050595500 ENOG411DQ1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411DQ1N Q9ASW2,F4HVA0 Q9ASW2_ARATH,F4HVA0_ARATH At1g54310/F20D21_13 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 27107,49369 At1g54310/F20D21_13 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168]; RNA binding [GO:0003723],plasma membrane [GO:0005886]; methyltransferase activity [GO:0008168]; RNA binding [GO:0003723] locus:2020053; AT1G54310 Ribosomal RNA large subunit methyltransferase Os02g0173700 protein (Fragment) A0A0P0VFA1 A0A0P0VFA1_ORYSJ Os02g0173700 OSNPB_020173700 ENOG411DQ1R ARF16,ARF10 Q93YR9,Q9SKN5,A0A1P8B1S1 ARFP_ARATH,ARFJ_ARATH,A0A1P8B1S1_ARATH Auxin response factor 16,Auxin response factor 10,Auxin response factor no obvious auxin-related growth phenotype FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 73979,76721,74032 Auxin response factor 16,Auxin response factor 10,Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; miRNA binding [GO:0035198]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; cell division [GO:0051301]; pattern specification process [GO:0007389]; response to auxin [GO:0009733]; root cap development [GO:0048829]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; miRNA binding [GO:0035198]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; auxin-activated signaling pathway [GO:0009734]; cell division [GO:0051301]; developmental growth [GO:0048589]; fruit development [GO:0010154]; leaf development [GO:0048366]; pattern specification process [GO:0007389]; petal development [GO:0048441]; regulation of anthocyanin biosynthetic process [GO:0031540]; response to carbohydrate [GO:0009743]; root cap development [GO:0048829]; sepal development [GO:0048442]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. locus:2126460;,locus:2057517; AT4G30080,AT2G28350 auxin response factor Auxin response factor 18 (OsARF10),Auxin response factor 22,Os04g0390301 protein Q653H7,Q9AV47,A0A0P0W9T8 ARFR_ORYSJ,ARFV_ORYSJ,A0A0P0W9T8_ORYSJ ARF18 ARF10 Os06g0685700 LOC_Os06g47150 P0009H10.43 P0623A10.1,ARF22 Os10g0479900 LOC_Os10g33940 OSJNBa0093B11.2,Os04g0390301 OSNPB_040390301 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). ENOG411DQ1S RPSaA,RPSaB,P40,RPSAb Q9M8L5,Q08682,Q8H173,B9DG17,F4J4W3 FDL13_ARATH,RSSA1_ARATH,RSSA2_ARATH,B9DG17_ARATH,F4J4W3_ARATH F-box/FBD/LRR-repeat protein At1g80470,40S ribosomal protein Sa-1 (Laminin receptor homolog) (p40),40S ribosomal protein Sa-2 (p40 protein homolog),40S ribosomal protein SA FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. {ECO:0000255|HAMAP-Rule:MF_03015}.,FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. {ECO:0000256|HAMAP-Rule:MF_03015}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 52942,32291,30654,31981,37300 F-box/FBD/LRR-repeat protein At1g80470,40S ribosomal protein Sa-1 (Laminin receptor homolog) (p40),40S ribosomal protein Sa-2 (p40 protein homolog),40S ribosomal protein SA 90S preribosome [GO:0030686]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; small ribosomal subunit [GO:0015935]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000461]; mature ribosome assembly [GO:0042256]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; rRNA export from nucleus [GO:0006407]; translation [GO:0006412],90S preribosome [GO:0030686]; small ribosomal subunit [GO:0015935]; structural constituent of ribosome [GO:0003735]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000461]; ribosomal small subunit assembly [GO:0000028]; rRNA export from nucleus [GO:0006407]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],chloroplast [GO:0009507]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2198913;,locus:2193997;,locus:2084988; AT1G80470,AT1G72370,AT3G04770 Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (By similarity) 40S ribosomal protein SA,Os03g0182600 protein,Os03g0402400 protein (Fragment) Q8H3I3,C7IZV1,Q10QU9,A0A0P0VTX8,A0A0P0VYK0 Q8H3I3_ORYSJ,C7IZV1_ORYSJ,Q10QU9_ORYSJ,A0A0P0VTX8_ORYSJ,A0A0P0VYK0_ORYSJ B1056G08.113 Os07g0616600 OsJ_25132 OSNPB_070616600,Os03g0182600 OSNPB_030182600,Os03g0182600 LOC_Os03g08440 OsJ_09668 OSJNBa0032G08.18 OSNPB_030182600,Os03g0402400 OSNPB_030402400 FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. {ECO:0000256|HAMAP-Rule:MF_03015, ECO:0000256|SAAS:SAAS00711328}.,FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. {ECO:0000256|HAMAP-Rule:MF_03015}. ENOG411DQ1P ARL8D,ARL8A,ARL8B,ARLA1C F4IZ82,Q8VY57,Q93Y31,A0A1I9LR83 ARL8D_ARATH,ARL8A_ARATH,ARL8B_ARATH,A0A1I9LR83_ARATH ADP-ribosylation factor-like protein 8d (AtARL8d) (ADP-ribosylation factor-like A1B) (AtARLA1B),ADP-ribosylation factor-like protein 8a (AtARL8a) (ADP-ribosylation factor-like A1C) (AtARLA1C),ADP-ribosylation factor-like protein 8b (AtARL8b) (ADP-ribosylation factor-like A1D) (AtARLA1D),ADP-ribosylation factor-like A1C DISRUPTION PHENOTYPE: In double and triple mutants arl8a-1 arl8b-1 and arl8a-1 arl8b-1 arl8c-1, impaired multiplication of tomato mosaic virus (ToMV) associated with reduced production of negative-strand RNA. {ECO:0000269|PubMed:22174675}.,DISRUPTION PHENOTYPE: In double and triple mutants arl8a-1 arl8b-1 and arl8a-1 arl8b-1 arl8c-1, impaired multiplication of tomato mosaic virus (ToMV). {ECO:0000269|PubMed:22174675}. FUNCTION: May play a role in lysosome motility. May play a role in chromosome segregation. {ECO:0000250|UniProtKB:Q9NVJ2}.,FUNCTION: May play a role in lysosome motility. May play a role in chromosome segregation. {ECO:0000250|UniProtKB:Q9NVJ2}.; FUNCTION: (Microbial infection) Component of tomato mosaic virus (ToMV) RNA replication complexes. Required for tobamovirus multiplication, especially for efficient negative-strand RNA synthesis and viral RNA capping. {ECO:0000269|PubMed:22174675}. R-ATH-6798695; 19489,20404,18079 ADP-ribosylation factor-like protein 8d (AtARL8d) (ADP-ribosylation factor-like A1B) (AtARLA1B),ADP-ribosylation factor-like protein 8a (AtARL8a) (ADP-ribosylation factor-like A1C) (AtARLA1C),ADP-ribosylation factor-like protein 8b (AtARL8b) (ADP-ribosylation factor-like A1D) (AtARLA1D),ADP-ribosylation factor-like A1C late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; spindle [GO:0005819]; GTP binding [GO:0005525]; cell cycle [GO:0007049]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; defense response to virus [GO:0051607]; small GTPase mediated signal transduction [GO:0007264],cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; spindle [GO:0005819]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; GTP binding [GO:0005525]; cell cycle [GO:0007049]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; defense response to virus [GO:0051607]; small GTPase mediated signal transduction [GO:0007264],late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; plasmodesma [GO:0009506]; spindle [GO:0005819]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; GTP binding [GO:0005525]; cell cycle [GO:0007049]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; small GTPase mediated signal transduction [GO:0007264],intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264] locus:2097340;,locus:2097355;,locus:2158591; AT3G49860,AT3G49870,AT5G67560 ADP-RIBOSYLATION FACTOR-like protein Os03g0200800 protein (Small GTP-binding protein domain containing protein, expressed) (cDNA clone:006-206-H08, full insert sequence) Q10QD5 Q10QD5_ORYSJ LOC_Os03g10370 Os03g0200800 OsJ_09807 OSNPB_030200800 ENOG411DQ1Q UXS1,UXS4,UXS2 Q8VZC0,Q8S8T4,Q9LZI2,C0Z2I3,B3H4I6,F4JAG3 UXS1_ARATH,UXS4_ARATH,UXS2_ARATH,C0Z2I3_ARATH,B3H4I6_ARATH,F4JAG3_ARATH UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35) (UDP-XYL synthase 1) (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1),UDP-glucuronic acid decarboxylase 4 (EC 4.1.1.35) (UDP-XYL synthase 4) (UDP-glucuronate decarboxylase 4) (UGD) (UXS-4),UDP-glucuronic acid decarboxylase 2 (EC 4.1.1.35) (UDP-XYL synthase 2) (UDP-glucuronate decarboxylase 2) (UGD) (UXS-2) (dTDP-glucose 4-6-dehydratase homolog D18),AT2G47650 protein (UDP-xylose synthase 4),UDP-glucuronic acid decarboxylase 1 FUNCTION: Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. {ECO:0000269|PubMed:12481102}.,FUNCTION: Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. {ECO:0000269|PubMed:12481102, ECO:0000269|PubMed:15655675}. PATHWAY: Nucleotide-sugar biosynthesis; UDP-alpha-D-xylose biosynthesis; UDP-alpha-D-xylose from UDP-alpha-D-glucuronate: step 1/1. ARA:AT3G62830-MONOMER;,ARA:AT2G47650-MONOMER; 4.1.1.35 48631,49945,49971,50676,39647,51392 UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35) (UDP-XYL synthase 1) (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1),UDP-glucuronic acid decarboxylase 4 (EC 4.1.1.35) (UDP-XYL synthase 4) (UDP-glucuronate decarboxylase 4) (UGD) (UXS-4),UDP-glucuronic acid decarboxylase 2 (EC 4.1.1.35) (UDP-XYL synthase 2) (UDP-glucuronate decarboxylase 2) (UGD) (UXS-2) (dTDP-glucose 4-6-dehydratase homolog D18),AT2G47650 protein (UDP-xylose synthase 4),UDP-glucuronic acid decarboxylase 1 Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; NAD+ binding [GO:0070403]; UDP-glucuronate decarboxylase activity [GO:0048040]; D-xylose metabolic process [GO:0042732]; UDP-D-xylose biosynthetic process [GO:0033320],Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; NAD+ binding [GO:0070403]; UDP-glucuronate decarboxylase activity [GO:0048040]; UDP-D-xylose biosynthetic process [GO:0033320],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; dTDP-glucose 4,6-dehydratase activity [GO:0008460]; NAD+ binding [GO:0070403]; UDP-glucuronate decarboxylase activity [GO:0048040]; D-xylose metabolic process [GO:0042732]; dTDP-rhamnose biosynthetic process [GO:0019305]; UDP-D-xylose biosynthetic process [GO:0033320],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; D-xylose metabolic process [GO:0042732],integral component of membrane [GO:0016021],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; UDP-glucuronate decarboxylase activity [GO:0048040]; D-xylose metabolic process [GO:0042732] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12481102}. locus:2081675;,locus:2043348;,locus:2083956; AT3G53520,AT2G47650,AT3G62830 udp-glucuronic acid decarboxylase Os03g0280800 protein (cDNA clone:J023075I12, full insert sequence),Os05g0363200 protein (UDP-glucuronic acid decarboxylase) (cDNA clone:J033145O13, full insert sequence),Os01g0315800 protein (UDP-glucuronic acid decarboxylase) (EC 4.1.1.35) (cDNA clone:J033028I19, full insert sequence),Os01g0837300 protein (UDP-glucuronic acid decarboxylase-like protein),Os01g0315800 protein (Fragment),Os01g0837300 protein (Fragment) B7EIS5,Q6I683,Q75PK7,Q5QMG5,A0A0P0V1K4,A0A0P0VA22 B7EIS5_ORYSJ,Q6I683_ORYSJ,Q75PK7_ORYSJ,Q5QMG5_ORYSJ,A0A0P0V1K4_ORYSJ,A0A0P0VA22_ORYSJ Os03g0280800 OSNPB_030280800,UXS-5 Os05g0363200 OSNPB_050363200,UXS-2 Os01g0315800 B1012D10.32 OSNPB_010315800,P0506B12.41-2 Os01g0837300 OSNPB_010837300,Os01g0315800 OSNPB_010315800,Os01g0837300 OSNPB_010837300 ENOG411DQ1V MCK7.7 Q8RXT0,F4KDK1 Q8RXT0_ARATH,F4KDK1_ARATH At5g58200 (Calcineurin-like metallo-phosphoesterase superfamily protein) (Putative phosphoesterase),Calcineurin-like metallo-phosphoesterase superfamily protein 24378,34081 At5g58200 (Calcineurin-like metallo-phosphoesterase superfamily protein) (Putative phosphoesterase),Calcineurin-like metallo-phosphoesterase superfamily protein hydrolase activity [GO:0016787] locus:2161293; AT5G58200 Inherit from NOG: transcripton factor Diadenosine tetraphosphatase and related serine/threonine protein phosphatases-like (Os06g0182400 protein) (cDNA clone:J013164J17, full insert sequence) Q5SMM1 Q5SMM1_ORYSJ Os06g0182400 Os06g0182400 OSJNBb0036B04.5 OSNPB_060182400 ENOG411DQ1W CDKC-2,CDKC-1,CDKC2 Q8W4P1,Q9LFT8,F4KGG0 CDKC2_ARATH,CDKC1_ARATH,F4KGG0_ARATH Cyclin-dependent kinase C-2 (CDKC;2) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin-dependent kinase C-1 (CDKC;1) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin dependent kinase group C2 R-ATH-674695;R-ATH-6796648; 2.7.11.22; 2.7.11.22; 2.7.11.23 57129,56729,51319 Cyclin-dependent kinase C-2 (CDKC;2) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin-dependent kinase C-1 (CDKC;1) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin dependent kinase group C2 cytosol [GO:0005829]; nuclear body [GO:0016604]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; kinase activity [GO:0016301]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; carpel development [GO:0048440]; flower development [GO:0009908]; leaf development [GO:0048366]; mRNA processing [GO:0006397]; protein phosphorylation [GO:0006468]; regulation of viral process [GO:0050792]; response to virus [GO:0009615],cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; kinase activity [GO:0016301]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; leaf development [GO:0048366]; protein phosphorylation [GO:0006468]; response to virus [GO:0009615],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Highly expressed in flowers. Expressed in seedlings, roots, rosettes and stems. {ECO:0000269|PubMed:12678503}. locus:2177744;,locus:2145397; AT5G64960,AT5G10270 Cyclin-dependent kinase Cyclin-dependent kinase C-1 (CDKC;1) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin-dependent kinase C-2 (CDKC;2) (EC 2.7.11.22) (EC 2.7.11.23),Os01g0958000 protein (Fragment) Q6I5Y0,Q5JK68,A0A0P0VDC8 CDKC1_ORYSJ,CDKC2_ORYSJ,A0A0P0VDC8_ORYSJ CDKC-1 Os05g0389700 LOC_Os05g32360 OJ1562_H01.5 OsJ_18411,CDKC-2 CDKC1 Os01g0958000 LOC_Os01g72790 OJ1294_F06.25 OsJ_04825,Os01g0958000 OSNPB_010958000 ENOG411DQ1T NOV F4JTS8 F4JTS8_ARATH Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Null: Embryo defective; Cotyledon; Knockdown: Narrow rosette leaves; Short roots; Reduced rosette leaf venation-D. Meinke-2003 306349 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein nucleus [GO:0005634]; kinase activity [GO:0016301]; auxin polar transport [GO:0009926]; cell fate specification [GO:0001708]; embryo development ending in seed dormancy [GO:0009793]; leaf vascular tissue pattern formation [GO:0010305]; root development [GO:0048364]; stem cell population maintenance [GO:0019827] locus:2119470; AT4G13750 NA Os03g0803700 protein (Fragment) A0A0P0W4F6 A0A0P0W4F6_ORYSJ Os03g0803700 OSNPB_030803700 ENOG411DQ1U UFD1 Q8W570,A8MQW3,Q9SJV0,Q9SVK0 Q8W570_ARATH,A8MQW3_ARATH,Q9SJV0_ARATH,Q9SVK0_ARATH AT4g38930/F19H22_30 (Putative ubiquitin-dependent proteolytic protein) (Ubiquitin fusion degradation UFD1 family protein),AT2G21270 protein (Ubiquitin fusion degradation 1),At2g21270 (Putative ubiquitin fusion-degradation protein) (Ubiquitin fusion degradation 1),Putative ubiquitin-dependent proteolytic protein (Ubiquitin fusion degradation UFD1 family protein) R-ATH-110320; 34582,37712,35323,34967 AT4g38930/F19H22_30 (Putative ubiquitin-dependent proteolytic protein) (Ubiquitin fusion degradation UFD1 family protein),AT2G21270 protein (Ubiquitin fusion degradation 1),At2g21270 (Putative ubiquitin fusion-degradation protein) (Ubiquitin fusion degradation 1),Putative ubiquitin-dependent proteolytic protein (Ubiquitin fusion degradation UFD1 family protein) ubiquitin-dependent protein catabolic process [GO:0006511],cytosol [GO:0005829]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2050054;,locus:2120247; AT4G38930,AT2G21270 ubiquitin fusion degradation protein 1 Os09g0493500 protein,Os04g0577000 protein,Os02g0181800 protein (Fragment) B9G4C5,A0A0P0WDT0,A0A0P0VFH4,A0A0P0WDV8 B9G4C5_ORYSJ,A0A0P0WDT0_ORYSJ,A0A0P0VFH4_ORYSJ,A0A0P0WDV8_ORYSJ Os09g0493500 OsJ_29866 OSNPB_090493500,Os04g0577000 OSNPB_040577000,Os02g0181800 OSNPB_020181800 ENOG411DQ1Z VPS41 P93043 VPS41_ARATH Vacuolar protein sorting-associated protein 41 homolog No homozygous mutant plants recovered-M. Morita-2009 FUNCTION: Required for vacuolar assembly and vacuolar traffic. {ECO:0000250}. 110279 Vacuolar protein sorting-associated protein 41 homolog CORVET complex [GO:0033263]; HOPS complex [GO:0030897]; late endosome [GO:0005770]; GTPase binding [GO:0051020]; gravitropism [GO:0009630]; protein targeting to vacuole [GO:0006623]; regulation of SNARE complex assembly [GO:0035542]; vacuole fusion, non-autophagic [GO:0042144]; vesicle-mediated transport [GO:0016192] locus:2200008; AT1G08190 Vacuolar protein sorting-associated protein 41 homolog Vacuolar protein sorting-associated protein 41 homolog Q7XX94 Q7XX94_ORYSJ Os04g0195000 OSJNBa0040D17.15 OSJNBb0026E15.2 OSNPB_040195000 FUNCTION: Required for vacuolar assembly and vacuolar traffic. {ECO:0000256|PIRNR:PIRNR028921}. ENOG411DQ1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Cyclin-D5-2 (G1/S-specific cyclin-D5-2) (CycD5;2) Q2QMW1 CCD52_ORYSJ CYCD5-2 Os12g0588800 LOC_Os12g39830 ENOG411DQ1Y TBL13 Q9ZQR5 TBL13_ARATH Protein trichome birefringence-like 13 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 46462 Protein trichome birefringence-like 13 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2055200; AT2G14530 Pfam:DUF231 Leaf senescence related protein-like (Os07g0498900 protein) (cDNA clone:J033024K20, full insert sequence) Q69RQ8 Q69RQ8_ORYSJ Os07g0498900 OsJ_24345 OSJNBb0055I24.101 OSNPB_070498900 ENOG411DTF8 KCS1 Q9MAM3 KCS1_ARATH 3-ketoacyl-CoA synthase 1 (KCS-1) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 1) (VLCFA condensing enzyme 1) DISRUPTION PHENOTYPE: Plants have thinner stems with an altered wax composition, and are more sensitive to dehydration. {ECO:0000269|PubMed:10074711}. Thin inflorescence stems; Sensitive to low humidity-J. Jaworski-1999 FUNCTION: Contributes to cuticular wax and suberin biosynthesis. Involved in both decarbonylation and acyl-reduction wax synthesis pathways. Elongase condensing enzyme mostly active with saturated fatty acids, especially with 16:0, 16:1, 18:0, and 20:0. Mediates the synthesis of VLCFAs from 20 to 26 carbons in length (e.g. C20:1, C20, C22, C24 and C26). {ECO:0000269|PubMed:10074711, ECO:0000269|PubMed:15277688, ECO:0000269|PubMed:16765910}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT1G01120-MONOMER;MetaCyc:AT1G01120-MONOMER; 2.3.1.199 59276 3-ketoacyl-CoA synthase 1 (KCS-1) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 1) (VLCFA condensing enzyme 1) cytosolic ribosome [GO:0022626]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid elongase activity [GO:0009922]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; wax biosynthetic process [GO:0010025] TISSUE SPECIFICITY: Ubiquitous (PubMed:10074711). Expressed in siliques, flowers, leaves and stems. Barely detected in roots (PubMed:18465198). {ECO:0000269|PubMed:10074711, ECO:0000269|PubMed:18465198}. locus:2200955; AT1G01120 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-),Os03g0245700 protein Q10P61,A0A0P0VVH8 Q10P61_ORYSJ,A0A0P0VVH8_ORYSJ Os03g0245700 LOC_Os03g14170 Os03g0245700 OsJ_10120 OSNPB_030245700,Os03g0245700 OSNPB_030245700 ENOG411DUA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histidine kinase- DNA gyrase B- and HSP90-like ATPase Os06g0474900 protein Q69Y37 Q69Y37_ORYSJ P0021H10.10-1 Os06g0474900 OSNPB_060474900 ENOG411DUA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prenyltransferase and squalene oxidase repeat Terpene cyclase/mutase family member (EC 5.4.99.-) Q0J778 Q0J778_ORYSJ Os08g0223900 Os08g0223900 OsJ_26457 OSNPB_080223900 ENOG411DUA3 F1P2.180 Q9SN75,A0A1I9LR92,F4JBM0,A0A1I9LR93 Q9SN75_ARATH,A0A1I9LR92_ARATH,F4JBM0_ARATH,A0A1I9LR93_ARATH At3g47630 (Translocator assembly/maintenance protein) (Uncharacterized protein At3g47630) (Uncharacterized protein F1P2.180),Translocator assembly/maintenance protein 37362,25299,36039,30972 At3g47630 (Translocator assembly/maintenance protein) (Uncharacterized protein At3g47630) (Uncharacterized protein F1P2.180),Translocator assembly/maintenance protein phosphatidate cytidylyltransferase activity [GO:0004605]; cardiolipin biosynthetic process [GO:0032049] locus:2079207; AT3G47630 mitochondrial translocator assembly and maintenance protein 41 Os05g0295700 protein,Os11g0549650 protein,Os11g0549690 protein B9FNQ2,A0A0P0Y3E2,A0A0P0Y3F4 B9FNQ2_ORYSJ,A0A0P0Y3E2_ORYSJ,A0A0P0Y3F4_ORYSJ Os05g0295700 OsJ_17936 OSNPB_050295700,Os11g0549650 OSNPB_110549650,Os11g0549690 OSNPB_110549690 ENOG411E8Z7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0159250 protein Q6ETI0 Q6ETI0_ORYSJ B1103G11.26 Os02g0159250 OSNPB_020159250 ENOG411E8ZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8ZW Q9SSS0 Q9SSS0_ARATH F6D8.10 (Late embryogenesis abundant protein-like protein/LEA protein-like protein) (Late embryogenesis abundant protein-related / LEA protein-like protein) 12001 F6D8.10 (Late embryogenesis abundant protein-like protein/LEA protein-like protein) (Late embryogenesis abundant protein-related / LEA protein-like protein) locus:2035134; AT1G52680 late embryogenesis abundant protein-related LEA protein-related NA NA NA NA NA NA NA ENOG411E8ZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0415200 protein,Os09g0412400 protein (cDNA clone:J033054E07, full insert sequence) Q6ER14,Q6ES43 Q6ER14_ORYSJ,Q6ES43_ORYSJ Os09g0415200 OsJ_29359 OSNPB_090415200 P0707C02.19,Os09g0412400 Os09g0412400 OJ1294_G06.29 OsJ_29341 OSNPB_090412400 P0643D11.4 ENOG411E8ZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8ZB Q8L7A6 Q8L7A6_ARATH Cotton fiber protein 8283 Cotton fiber protein locus:1005716726; AT1G15385 NA NA NA NA NA NA NA NA ENOG411DTF1 NET1B,NET1A,NET1D F4JIF4,Q9LUI2,F4HZB5 NET1B_ARATH,NET1A_ARATH,NET1D_ARATH Protein NETWORKED 1B,Protein NETWORKED 1A,Protein NETWORKED 1D DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with NET1A. Net1a and net1b double mutant shows a significant acceleration in root-cell expansion. {ECO:0000269|PubMed:22840520}.,DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with NET1B. Net1a and net1b double mutant shows a significant acceleration in root-cell expansion. {ECO:0000269|PubMed:22840520}. FUNCTION: Plant-specific actin binding protein. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000305|PubMed:22840520}.,FUNCTION: Plant-specific actin binding protein. Associates with F-actin at the plasma membrane and plasmodesmata. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000269|PubMed:22840520}. 196978,198852,198550 Protein NETWORKED 1B,Protein NETWORKED 1A,Protein NETWORKED 1D nucleus [GO:0005634]; actin binding [GO:0003779],cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; actin filament binding [GO:0051015],plasma membrane [GO:0005886]; actin binding [GO:0003779] TISSUE SPECIFICITY: Expressed in root meristems and at very low levels throughout mature vasculature. {ECO:0000269|PubMed:22840520}. locus:2130210;,locus:2094379;,locus:2007569; AT4G14760,AT3G22790,AT1G03080 kinase interacting family protein Os10g0422000 protein (Fragment),Os03g0103950 protein,Os03g0104000 protein (Fragment),Os12g0605200 protein (Fragment),Os03g0161100 protein,Os10g0422075 protein (Fragment) Q0IXM4,B9FAA7,A0A0P0VRX4,A0A0P0YC62,A0A0P0VT99,A0A0P0XU81 Q0IXM4_ORYSJ,B9FAA7_ORYSJ,A0A0P0VRX4_ORYSJ,A0A0P0YC62_ORYSJ,A0A0P0VT99_ORYSJ,A0A0P0XU81_ORYSJ Os10g0422000 OSNPB_100422000,Os03g0103950 OsJ_09072 OSNPB_030103950,Os03g0104000 OSNPB_030104000,Os12g0605200 OSNPB_120605200,Os03g0161100 OSNPB_030161100,Os10g0422075 OSNPB_100422075 ENOG411EIVG Q1G3U3 Q1G3U3_ARATH Uncharacterized protein 7885 Uncharacterized protein locus:4010713458; AT1G21528 NA NA NA NA NA NA NA NA ENOG411DQI7 O65399,A0A1P8AWX9,F4IAH8 E131_ARATH,A0A1P8AWX9_ARATH,F4IAH8_ARATH Glucan endo-1,3-beta-glucosidase 1 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 1) ((1->3)-beta-glucanase 1) (Beta-1,3-endoglucanase 1) (Beta-1,3-glucanase 1),O-Glycosyl hydrolases family 17 protein ARA:AT1G11820-MONOMER; 3.2.1.39 55630,52255,42348 Glucan endo-1,3-beta-glucosidase 1 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 1) ((1->3)-beta-glucanase 1) (Beta-1,3-endoglucanase 1) (Beta-1,3-glucanase 1),O-Glycosyl hydrolases family 17 protein anchored component of plasma membrane [GO:0046658]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2027317; AT1G11820 glucan endo-1-3-beta-glucosidase Os07g0510200 protein (Putative beta-1,3-glucanase),Os07g0510200 protein (Putative beta-1,3-glucanase) (cDNA clone:001-123-G01, full insert sequence) (cDNA clone:J033032E23, full insert sequence),Os08g0242300 protein Q6Z4B2,Q6Z4B3,A0A0P0XDL4 Q6Z4B2_ORYSJ,Q6Z4B3_ORYSJ,A0A0P0XDL4_ORYSJ P0409B11.21-2 Os07g0510200 OSNPB_070510200,P0409B11.21-1 Os07g0510200 OsJ_24399 OSNPB_070510200,Os08g0242300 OSNPB_080242300 ENOG411DUXY MKP11.21 A0A1P8BB81,F4KGZ4 A0A1P8BB81_ARATH,F4KGZ4_ARATH Transducin/WD40 repeat-like superfamily protein 60568,57021 Transducin/WD40 repeat-like superfamily protein locus:2167190; AT5G17370 WD-40 repeat family protein Os07g0108000 protein A0A0P0X1T5 A0A0P0X1T5_ORYSJ Os07g0108000 OSNPB_070108000 ENOG411DUXZ EMB2768 Q9M876 SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.1) (Protein EMBRYO DEFECTIVE 2768) (Protein EMBRYONIC FACTOR 31) (Tyrosyl-tRNA synthetase) (TyrRS) DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at the preglobular stage. {ECO:0000269|PubMed:22714903, ECO:0000305|PubMed:16297076}. Embryo defective; Gametophyte defective (inferred)-D. Meinke-2007 FUNCTION: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). {ECO:0000250|UniProtKB:Q9Y2Z4}. ARA:AT3G02660-MONOMER; 6.1.1.1 56619 Tyrosine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.1) (Protein EMBRYO DEFECTIVE 2768) (Protein EMBRYONIC FACTOR 31) (Tyrosyl-tRNA synthetase) (TyrRS) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; RNA binding [GO:0003723]; tyrosine-tRNA ligase activity [GO:0004831]; embryo development ending in seed dormancy [GO:0009793]; tRNA aminoacylation [GO:0043039]; tyrosyl-tRNA aminoacylation [GO:0006437] locus:2076879; AT3G02660 tyrosyl-tRNA Tyrosine--tRNA ligase (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) Q943W5 Q943W5_ORYSJ Os01g0500900 B1080D07.16 OSNPB_010500900 ENOG411DUXT GLIP6 Q9C996 GLIP6_ARATH GDSL esterase/lipase 6 (EC 3.1.1.-) (Extracellular lipase 6) ARA:AT1G71120-MONOMER; 3.1.1.- 40224 GDSL esterase/lipase 6 (EC 3.1.1.-) (Extracellular lipase 6) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] locus:2026286; AT1G71120 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411DUXW GH3.17 Q9FZ87 GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 17) (AtGH3-17) FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Appears to favor Glu over Asp while the other GH3 favor Asp over Glu. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates. {ECO:0000269|PubMed:15659623}. ARA:AT1G28130-MONOMER;MetaCyc:AT1G28130-MONOMER; R-ATH-6798695; 6.3.2.- 68864 Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 17) (AtGH3-17) cytoplasm [GO:0005737]; nucleus [GO:0005634]; indole-3-acetic acid amido synthetase activity [GO:0010279]; auxin homeostasis [GO:0010252]; response to auxin [GO:0009733] locus:2010484; AT1G28130 Indole-3-acetic acid-amido synthetase Probable indole-3-acetic acid-amido synthetase GH3.13 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 13) (OsGH3-13) (OsGH3-14),Os11g0528700 protein Q2R3B4,A0A0P0Y303 GH313_ORYSJ,A0A0P0Y303_ORYSJ GH3.13 Os11g0528700 LOC_Os11g32520,Os11g0528700 OSNPB_110528700 FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ENOG411DUXV COAE Q9ZQH0 COAE_ARATH Dephospho-CoA kinase (EC 2.7.1.24) (AtCoaE) (Dephosphocoenzyme A kinase) FUNCTION: Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A. {ECO:0000269|PubMed:12860978}. PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 5/5. 2.7.1.24 25747 Dephospho-CoA kinase (EC 2.7.1.24) (AtCoaE) (Dephosphocoenzyme A kinase) chloroplast [GO:0009507]; peroxisome [GO:0005777]; vacuole [GO:0005773]; ATP binding [GO:0005524]; dephospho-CoA kinase activity [GO:0004140]; coenzyme A biosynthetic process [GO:0015937] locus:2038663; AT2G27490 Dephospho-CoA kinase Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase) Q94DR2 COAE_ORYSJ Os01g0360600 P0460H02.10 FUNCTION: Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A. {ECO:0000250}. ENOG411DUXQ Q93Z55 Q93Z55_ARATH Protein-lysine N-methyltransferase At3g58470 (EC 2.1.1.-) FUNCTION: S-adenosyl-L-methionine-dependent protein-lysine N-methyltransferase that methylates elongation factor 1-alpha. {ECO:0000256|HAMAP-Rule:MF_03187}. R-ATH-8876725; 2.1.1.- 28013 Protein-lysine N-methyltransferase At3g58470 (EC 2.1.1.-) cytoplasm [GO:0005737]; nucleic acid binding [GO:0003676]; protein-lysine N-methyltransferase activity [GO:0016279] locus:2076411; AT3G58470 N(6)-adenine-specific DNA methyltransferase Protein-lysine N-methyltransferase LOC_Os03g53890 (EC 2.1.1.-),OSJNBa0019J05.22 protein (OSJNBb0032D24.2 protein) (Os04g0285000 protein) Q75LK9,Q7XW72 Q75LK9_ORYSJ,Q7XW72_ORYSJ OSJNBa0047E24.28 LOC_Os03g53890 Os03g0749900 OsJ_12580 OSNPB_030749900,Os04g0285000 OsJ_14133 OSJNBa0019J05.22 OSJNBb0032D24.2 OSNPB_040285000 FUNCTION: S-adenosyl-L-methionine-dependent protein-lysine N-methyltransferase that methylates elongation factor 1-alpha. {ECO:0000256|HAMAP-Rule:MF_03187}. ENOG411DUXP AGT1 Q56YA5 SGAT_ARATH Serine--glyoxylate aminotransferase (EC 2.6.1.45) (Alanine--glyoxylate aminotransferase) (AGT) (EC 2.6.1.44) (Asparagine aminotransferase) (EC 2.6.1.-) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) FUNCTION: Photorespiratory enzyme that catalyzes transamination reactions with multiple substrates, including asparagine. Function exclusively as a catabolic enzyme in Asn metabolism. {ECO:0000269|PubMed:18235971, ECO:0000269|PubMed:23098902}. MISCELLANEOUS: Preferentially acts as a serine--glyoxylate aminotransferase in vitro. MetaCyc:AT2G13360-MONOMER; R-ATH-389661; 2.6.1.44;2.6.1.45; 2.6.1.45; 2.6.1.44; 2.6.1.-; 2.6.1.51 44208 Serine--glyoxylate aminotransferase (EC 2.6.1.45) (Alanine--glyoxylate aminotransferase) (AGT) (EC 2.6.1.44) (Asparagine aminotransferase) (EC 2.6.1.-) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; alanine-glyoxylate transaminase activity [GO:0008453]; serine-glyoxylate transaminase activity [GO:0050281]; serine-pyruvate transaminase activity [GO:0004760]; glycine biosynthetic process, by transamination of glyoxylate [GO:0019265]; photorespiration [GO:0009853] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in green, leafy tissues, root cortex and epidermis, developing siliques and dry seeds. {ECO:0000269|PubMed:11309139, ECO:0000269|PubMed:23098902}. locus:2041649; AT2G13360 serine-glyoxylate Os08g0502700 protein (Putative aminotransferase) (cDNA clone:J013000A23, full insert sequence) (cDNA clone:J013001P06, full insert sequence),Os08g0502700 protein (Fragment) Q6ZFI6,A0A0P0XHN6 Q6ZFI6_ORYSJ,A0A0P0XHN6_ORYSJ Os08g0502700 OJ1345_D02.38 OJ1506_F01.10 OsJ_27850 OSNPB_080502700,Os08g0502700 OSNPB_080502700 ENOG411DUXS PRD1 O23277,A0A1P8B861 PRD1_ARATH,A0A1P8B861_ARATH Protein PRD1 (AtPRD1) (Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1),Putative recombination initiation defect 1 DISRUPTION PHENOTYPE: Plants exhibit reduced fertility and meiotic defects. {ECO:0000269|PubMed:17762870}. Chromosomes do not synapse during both male and female meiosis. There is a total absence of chiasmata. No meiotic recombination occurs.,No vegetative growth defects but display short silique elongation suggesting fertility defects. Male and female gametophytes abort. Reduced fertility due to defects in meiosis-M. Grelon-2007 FUNCTION: Required for meiotic double-strand break formation. {ECO:0000269|PubMed:17762870}. 149133,146970 Protein PRD1 (AtPRD1) (Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1),Putative recombination initiation defect 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; hydrolase activity [GO:0016787]; meiotic cell cycle [GO:0051321] TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:17762870}. AT4G14180 NA Os04g0347700 protein (Fragment),Os04g0347650 protein Q0JE07,A0A0P0W8W0 Q0JE07_ORYSJ,A0A0P0W8W0_ORYSJ Os04g0347700 Os04g0347700 OSNPB_040347700,Os04g0347650 OSNPB_040347650 ENOG411DUXR ZW18 Q8RXV4,Q9SLU9,A8MRZ8,F4IBC0 Q8RXV4_ARATH,Q9SLU9_ARATH,A8MRZ8_ARATH,F4IBC0_ARATH Putative serine esterase family protein (Uncharacterized protein At1g09990) (mRNA, clone: RAFL23-26-B05),F19C14.4 protein (Putative serine esterase family protein) (Uncharacterized protein At1g58350) (ZW18 protein),Putative serine esterase family protein 92067,90899,91939,81396 Putative serine esterase family protein (Uncharacterized protein At1g09990) (mRNA, clone: RAFL23-26-B05),F19C14.4 protein (Putative serine esterase family protein) (Uncharacterized protein At1g58350) (ZW18 protein),Putative serine esterase family protein carboxylic ester hydrolase activity [GO:0052689]; cellular lipid metabolic process [GO:0044255] locus:2201936;,locus:2016610; AT1G09980,AT1G58350 serine esterase family protein Os12g0164800 protein A0A0P0Y7A6 A0A0P0Y7A6_ORYSJ Os12g0164800 OSNPB_120164800 ENOG411DUXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinacetylesterase domain containing protein Pectin acetylesterase (EC 3.1.1.-) Q5JLW5,A0A0N7KE80 Q5JLW5_ORYSJ,A0A0N7KE80_ORYSJ Os01g0892600 Os01g0892600 B1078G07.23 OSNPB_010892600,Os01g0892500 OSNPB_010892500 FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. ENOG411DUXD PDIL1-1,PDIL1-2,T12C14_210 Q9XI01,Q9SRG3,Q9LZN9,F4HZN9,A0A1I9LTP0 PDI11_ARATH,PDI12_ARATH,Q9LZN9_ARATH,F4HZN9_ARATH,A0A1I9LTP0_ARATH Protein disulfide isomerase-like 1-1 (AtPDIL1-1) (EC 5.3.4.1) (Protein disulfide-isomerase 1) (PDI 1) (Protein disulfide-isomerase 5) (AtPDI5),Protein disulfide isomerase-like 1-2 (AtPDIL1-2) (EC 5.3.4.1) (Protein disulfide-isomerase 2) (PDI 2) (Protein disulfide-isomerase 6) (AtPDI6),Disulfide isomerase-like protein (Uncharacterized protein T12C14_210),Protein disulfide-isomerase (EC 5.3.4.1),Disulfide isomerase-like protein DISRUPTION PHENOTYPE: Reduced seed set. {ECO:0000269|PubMed:18676877}. FUNCTION: Protein disulfide isomerase that associates with RD21A protease for trafficking from the ER through the Golgi to lytic and protein storage vacuoles of endothelial cells in developing seeds. Regulates the timing of programmed cell death (PCD) of the endothelial cells by chaperoning and inhibiting cysteine proteases during their trafficking to vacuoles. {ECO:0000269|PubMed:18676877}.,FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}. 5.3.4.1 55602,56365,10656,54159,12976 Protein disulfide isomerase-like 1-1 (AtPDIL1-1) (EC 5.3.4.1) (Protein disulfide-isomerase 1) (PDI 1) (Protein disulfide-isomerase 5) (AtPDI5),Protein disulfide isomerase-like 1-2 (AtPDIL1-2) (EC 5.3.4.1) (Protein disulfide-isomerase 2) (PDI 2) (Protein disulfide-isomerase 6) (AtPDI6),Disulfide isomerase-like protein (Uncharacterized protein T12C14_210),Protein disulfide-isomerase (EC 5.3.4.1),Disulfide isomerase-like protein chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; lytic vacuole within protein storage vacuole [GO:0000327]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; protein storage vacuole [GO:0000326]; thylakoid [GO:0009579]; vacuole [GO:0005773]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; embryo development ending in seed dormancy [GO:0009793]; protein folding [GO:0006457]; regulation of programmed cell death [GO:0043067]; response to cytokinin [GO:0009735]; response to endoplasmic reticulum stress [GO:0034976]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043]; seed development [GO:0048316],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; photoinhibition [GO:0010205]; protein folding [GO:0006457]; response to cadmium ion [GO:0046686]; response to endoplasmic reticulum stress [GO:0034976]; response to high light intensity [GO:0009644]; response to salt stress [GO:0009651],isomerase activity [GO:0016853],endoplasmic reticulum [GO:0005783]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454] DEVELOPMENTAL STAGE: During embryo development, expressed exclusively in endothelial cells from the pre-embryo up to the heart stage. Expression disappears when the endothelial cells undergo PCD in the early-bent cotyledon stage (at protein level). TISSUE SPECIFICITY: Highly expressed in flowers, stems and immature seeds, and at lower levels in leaves and siliques (at protein level). {ECO:0000269|PubMed:18574595, ECO:0000269|PubMed:18676877}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595}. locus:2036906;,locus:2204670;,locus:2096029; AT1G21750,AT1G77510,AT3G62510 Protein disulfide isomerase Protein disulfide isomerase-like 1-1 (OsPDIL1-1) (EC 5.3.4.1) (Endosperm storage protein 2) (Protein ESP2),Protein disulfide-isomerase (EC 5.3.4.1) (Fragment) Q53LQ0,A0A0P0XZP3 PDI11_ORYSJ,A0A0P0XZP3_ORYSJ PDIL1-1 Os11g0199200 LOC_Os11g09280 OsJ_33281,Os11g0199200 OSNPB_110199200 DISRUPTION PHENOTYPE: Accumulation of large quantities of glutelin precursor (proglutelin) in the endosperm. {ECO:0000269|PubMed:11950970, ECO:0000269|PubMed:20627947}. FUNCTION: Probable protein disulfide isomerase that plays an essential role in the segregation of proglutelin and prolamin polypeptides within the ER lumen of endosperm. Required to retain proglutelin in the cisternal ER lumen until ER export and, thereby, indirectly prevents heterotypic interactions with prolamin polypeptides. {ECO:0000269|PubMed:11950970, ECO:0000269|PubMed:20627947}. ENOG411DUXG Q9C975 GT643_ARATH Glycosyltransferase family protein 64 C3 (GT64 C3) (EC 2.4.1.-) FUNCTION: Probable glycosyltransferase. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT1G80290-MONOMER; 2.4.1.- 37703 Glycosyltransferase family protein 64 C3 (GT64 C3) (EC 2.4.1.-) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; transferase activity, transferring glycosyl groups [GO:0016757]; protein glycosylation [GO:0006486] locus:2034225; AT1G80290 Glycosyl transferase family 64 domain NA NA NA NA NA NA NA ENOG411DUXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DUXB Q9M907,A0A1I9LMU5 PP217_ARATH,A0A1I9LMU5_ARATH Pentatricopeptide repeat-containing protein At3g06920,Tetratricopeptide repeat (TPR)-like superfamily protein 98339,99941 Pentatricopeptide repeat-containing protein At3g06920,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2077637; AT3G06920 Pentatricopeptide repeat-containing protein Os07g0249100 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J013092H05, full insert sequence) Q7XHS8 Q7XHS8_ORYSJ P0021G06.106 Os07g0249100 OSNPB_070249100 P0639B07.35 ENOG411DUX5 F4JKW0 F4JKW0_ARATH Thioredoxin family protein 37056 Thioredoxin family protein chloroplast [GO:0009507]; cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; glutathione transferase activity [GO:0004364]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; glutathione metabolic process [GO:0006749] locus:2140533; AT4G10000 NA NA NA NA NA NA NA NA ENOG411DUX4 Q56WE5,B3H467 Q56WE5_ARATH,B3H467_ARATH Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (Uncharacterized protein At4g14310),Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 21209,19616 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (Uncharacterized protein At4g14310),Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein integral component of membrane [GO:0016021] locus:1009023385; AT4G14305 Peroxisomal membrane protein Os08g0566900 protein (Putative peroxisomal membrane protein(22-kDa)(PMP22)) (cDNA clone:J023123J02, full insert sequence) Q6Z1N7 Q6Z1N7_ORYSJ Os08g0566900 OsJ_28327 OSJNBa0044E16.33 OSNPB_080566900 ENOG411DUX7 PSL5,RSW3 Q9FN05,A0A1P8BAU5 PSL5_ARATH,A0A1P8BAU5_ARATH Probable glucan 1,3-alpha-glucosidase (EC 3.2.1.84) (Glucosidase II subunit alpha) (Protein PRIORITY IN SWEET LIFE 5) (Protein RADIAL SWELLING 3),Glycosyl hydrolases family 31 protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (permissive temperature of 21 degrees Celsius), but mutant plants have a temperature-sensitive phenotype (when transferred to 30 degrees Celsius) showing radially swollen roots and reduction in cellulose production. {ECO:0000269|PubMed:12492837}. Thick roots-R. Williamson-2002 FUNCTION: Cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins (By similarity). Essential for stable accumulation of the receptor EFR that determines the specific perception of bacterial elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Required for sustained activation of EFR-mediated signaling, but not receptor FLS2-mediated signaling elicited by the bacterial flagellin flg22. {ECO:0000250, ECO:0000269|PubMed:12492837, ECO:0000269|PubMed:20007779}. PATHWAY: Glycan metabolism; N-glycan metabolism. ARA:AT5G63840-MONOMER; 3.2.1.84; 3.2.1.84 104275,107394 Probable glucan 1,3-alpha-glucosidase (EC 3.2.1.84) (Glucosidase II subunit alpha) (Protein PRIORITY IN SWEET LIFE 5) (Protein RADIAL SWELLING 3),Glycosyl hydrolases family 31 protein chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; carbohydrate binding [GO:0030246]; glucan 1,3-alpha-glucosidase activity [GO:0033919]; glucosidase activity [GO:0015926]; cellulose biosynthetic process [GO:0030244]; defense response to bacterium [GO:0042742]; response to cadmium ion [GO:0046686]; unidimensional cell growth [GO:0009826],carbohydrate binding [GO:0030246]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, leaf blades, mature stems, cauline leaves, flower buds, flowers and siliques. {ECO:0000269|PubMed:12492837}. locus:2163976; AT5G63840 Neutral alpha-glucosidase Probable glucan 1,3-alpha-glucosidase (EC 3.2.1.84) (Glucosidase II subunit alpha),Os03g0216600 protein (Fragment) B9F676,A0A0P0VUP1,A0A0P0VUR3,A0A0P0VUP9 GLU2A_ORYSJ,A0A0P0VUP1_ORYSJ,A0A0P0VUR3_ORYSJ,A0A0P0VUP9_ORYSJ Os03g0216600 LOC_Os03g11720 OsJ_09923,Os03g0216600 OSNPB_030216600 FUNCTION: Cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins. May be required for defense response elicited by pathogen-associated molecular patterns (PAMPs) (By similarity). {ECO:0000250}. ENOG411DUX6 AIM1 Q9ZPI6 AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 (Protein ABNORMAL INFLORESCENCE MERISTEM 1) (AtAIM1) [Includes: Enoyl-CoA hydratase/3-2-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3) (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] DISRUPTION PHENOTYPE: Reduced rosette size, twisted leaves, and abnormal and sterile flowers. {ECO:0000269|PubMed:10521521}. Slightly smaller, darker green leaves; Increased branching; Few, abnormal flowers; Severely reduced fertility; Dark seeds with abnormal morphology; Disorganized floral meristems; Very small, twisted rosette leaves under short days-A. Bleecker-1999 FUNCTION: Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16) (PubMed:10521521, PubMed:17544464, PubMed:20463021). Possesses cinnamoyl-CoA hydratase activity and is involved in the peroxisomal beta-oxidation pathway for the biosynthesis of benzoic acid (BA). Required for the accumulation in seeds of benzoylated glucosinolates (BGs) and substituted hydroxybenzoylated choline esters, which are BA-containing secondary metabolites. Required for salicylic acid (SA) in seeds (PubMed:24254312). {ECO:0000269|PubMed:10521521, ECO:0000269|PubMed:17544464, ECO:0000269|PubMed:20463021, ECO:0000269|PubMed:24254312}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. MetaCyc:AT4G29010-MONOMER; R-ATH-390247; 4.2.1.17; 5.1.2.3; 5.3.3.8; 1.1.1.35 77858 Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 (Protein ABNORMAL INFLORESCENCE MERISTEM 1) (AtAIM1) [Includes: Enoyl-CoA hydratase/3-2-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3) (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] cell wall [GO:0005618]; chloroplast [GO:0009507]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; 3-hydroxyacyl-CoA dehydratase activity [GO:0018812]; 3-hydroxyacyl-CoA dehydrogenase activity [GO:0003857]; 3-hydroxybutyryl-CoA epimerase activity [GO:0008692]; dodecenoyl-CoA delta-isomerase activity [GO:0004165]; enoyl-CoA hydratase activity [GO:0004300]; microtubule binding [GO:0008017]; mRNA binding [GO:0003729]; fatty acid beta-oxidation [GO:0006635]; flower development [GO:0009908]; jasmonic acid biosynthetic process [GO:0009695] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10521521}. locus:2119891; AT4G29010 peroxisomal fatty acid beta-oxidation multifunctional protein Peroxisomal fatty acid beta-oxidation multifunctional protein (MFP) [Includes: Enoyl-CoA hydratase/3-2-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3) (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)],Os02g0274100 protein (Fragment) Q8W1L6,A0A0P0VHH4 MFP_ORYSJ,A0A0P0VHH4_ORYSJ MFP Os02g0274100 LOC_Os02g17390 P0413A11.18,Os02g0274100 OSNPB_020274100 FUNCTION: Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions. {ECO:0000269|PubMed:11706039, ECO:0000303|PubMed:11706039}. ENOG411DUX1 EMB2421 Q8GYJ7 Q8GYJ7_ARATH FAD/NAD(P)-binding oxidoreductase family protein (Uncharacterized protein At1g24340/F3I6_28) Embryo defective; Globular-D. Meinke-2003 ARA:AT1G24340-MONOMER; 78321 FAD/NAD(P)-binding oxidoreductase family protein (Uncharacterized protein At1g24340/F3I6_28) FAD binding [GO:0071949]; oxidoreductase activity [GO:0016491] locus:2032482; AT1G24340 FAD binding domain Os01g0901700 protein A0A0P0VBL5 A0A0P0VBL5_ORYSJ Os01g0901700 OSNPB_010901700 ENOG411DUX0 PEX6 Q8RY16 PEX6_ARATH Peroxisome biogenesis protein 6 (Peroxin-6) (AtPEX6) Resistant to root elongation inhibition by IBA but responds normally to IAA. Fails to respond to the stimulatory effects of IBA on lateral root initiation but makes lateral roots in response to IAA. Specifically defective in IBA responses. Has several peroxisome-defective phenotypes: does not develop normally without exogenous sucrose dramatic defects in hypocotyl and root elongation in the absence of sucrose. Shorter root and hypocotyl than WT. Plants grown in soil have smaller rosettes fewer rosette leaves and shorter primary inflorescence stems than WT. Also has shorter siliques containing fewer seeds than WT. Pale green in color. Dwarf; Pale green; Insensitive to IBA-B. Bartel-2004 FUNCTION: Involved in peroxisomal-targeting signal one (PTS1) and peroxisomal-targeting signal two (PTS2) protein import. Required for jasmonate biosynthesis. Necessary for the developmental elimination of obsolete peroxisome matix proteins. May form heteromeric AAA ATPase complexes required for the import of proteins. May be involved in PEX5 recycling. {ECO:0000269|PubMed:14745029, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:17544464, ECO:0000269|PubMed:19246395, ECO:0000269|PubMed:20969679}. 103045 Peroxisome biogenesis protein 6 (Peroxin-6) (AtPEX6) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; fatty acid beta-oxidation [GO:0006635]; protein import into peroxisome matrix [GO:0016558] locus:2007574; AT1G03000 ATPase family associated with various cellular activities (AAA) OSJNBa0093O08.9 protein (Os04g0617600 protein) Q7XTN8 Q7XTN8_ORYSJ Os04g0617600 OsJ_16174 OSJNBa0093O08.9 OSNPB_040617600 ENOG411DUX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin efflux carrier Probable auxin efflux carrier component 9 (OsPIN9) Q5VQY3 PIN9_ORYSJ PIN9 Os01g0802700 LOC_Os01g58860 P0003D09.37 FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000305}. ENOG411DUX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0282232 protein,Os03g0282300 protein A0A0P0VWT3,A0A0P0VW74 A0A0P0VWT3_ORYSJ,A0A0P0VW74_ORYSJ Os03g0282232 OSNPB_030282232,Os03g0282300 OSNPB_030282300 ENOG411EHD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0655000 protein,Os01g0655700 protein,Os01g0655600 protein A2ZW47,A0A0P0V650,A0A0P0V647 A2ZW47_ORYSJ,A0A0P0V650_ORYSJ,A0A0P0V647_ORYSJ Os01g0655000 OsJ_02865 OsJ_02866 OSNPB_010655000,Os01g0655700 OSNPB_010655700,Os01g0655600 OSNPB_010655600 ENOG411EHD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0014K14.12 protein (OSJNBb0116K07.4 protein) (Os04g0504100 protein) Q7F8Y8 Q7F8Y8_ORYSJ Os04g0504100 OsJ_15370 OSJNBa0014K14.12 OSJNBb0116K07.4 OSNPB_040504100 ENOG411EHD2 O65920 O65920_ARATH At2g19000 (Expressed protein) 12755 At2g19000 (Expressed protein) locus:2044410; AT2G19000 Inherit from euNOG: EXPRESSED DURING L mature pollen stage M germinated pollen stage 4 anthesis C globular stage petal differentiation and expansion stage NA NA NA NA NA NA NA ENOG411EHD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Preprotein translocase SecG subunit NA NA NA NA NA NA NA ENOG411EHD0 RALFL18,RALFL14 O49320,Q9SIU6 RLF18_ARATH,RLF14_ARATH Protein RALF-like 18,Protein RALF-like 14 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 11390,11719 Protein RALF-like 18,Protein RALF-like 14 apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] locus:2046580;,locus:2046031; AT2G33130,AT2G20660 ralf-like 18 NA NA NA NA NA NA NA ENOG411EHD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0201275 protein A0A0P0V067 A0A0P0V067_ORYSJ Os01g0201275 OSNPB_010201275 ENOG411EHD5 CLE20 Q3EDI6 CLE20_ARATH CLAVATA3/ESR (CLE)-related protein 20 [Cleaved into: CLE20p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. Inhibits irreversibly root growth by reducing cell division rates in the root apical meristem (PubMed:20697738). {ECO:0000269|PubMed:16902140, ECO:0000269|PubMed:20697738}. 9538 CLAVATA3/ESR (CLE)-related protein 20 [Cleaved into: CLE20p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in roots, seedlings, leaves, flowers, stems and apex, and, to a lower extent, in siliques and pollen. {ECO:0000269|PubMed:12602871}. locus:504956102; AT1G05065 clavata3 esr-related 20 NA NA NA NA NA NA NA ENOG411EHD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EHDJ F4JKI8 F4JKI8_ARATH Transmembrane protein 15554 Transmembrane protein integral component of membrane [GO:0016021] locus:2123648; AT4G28170 NA NA NA NA NA NA NA NA ENOG411EHDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0253100 protein (Fragment) A0A0P0WJW9 A0A0P0WJW9_ORYSJ Os05g0253100 OSNPB_050253100 ENOG411EHDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CemA family Chloroplast envelope membrane protein P12212 CEMA_ORYSJ cemA ycf10 LOC_Osp1g00470 FUNCTION: May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake into chloroplasts. {ECO:0000255|HAMAP-Rule:MF_01308}. ENOG411EHDN Q9LZD1 Q9LZD1_ARATH MATH domain/coiled-coil protein (Uncharacterized protein F12E4_340) 12797 MATH domain/coiled-coil protein (Uncharacterized protein F12E4_340) locus:2142704; AT5G03550 Arabidopsis phospholipase-like protein (PEARLI 4) NA NA NA NA NA NA NA ENOG411EHDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0136050 protein (Fragment) A0A0P0UXN9 A0A0P0UXN9_ORYSJ Os01g0136050 OSNPB_010136050 ENOG411EHDB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0170600 protein Q65XS2 Q65XS2_ORYSJ Os05g0170600 Os05g0170600 OSNPB_050170600 P0685E10.7 ENOG411EHDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: phosphate abc transporter NA NA NA NA NA NA NA ENOG411EHDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flowering promoting factor-like 1 NA NA NA NA NA NA NA ENOG411EHDZ Q940A5 Q940A5_ARATH At1g55475 (Uncharacterized protein At1g55475) 13546 At1g55475 (Uncharacterized protein At1g55475) locus:1006230777; AT1G55475 NA NA NA NA NA NA NA NA ENOG411EHDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO domain NA NA NA NA NA NA NA ENOG411EHDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0593900 protein A0A0P0WEK1 A0A0P0WEK1_ORYSJ Os04g0593900 OSNPB_040593900 ENOG411EHDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EHDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EHDQ Q9SX41,Q1G3Z6,Q9SJ07,Q3E7N5 Y1022_ARATH,Y1317_ARATH,Y2192_ARATH,Y5406_ARATH Putative B3 domain-containing protein At1g50220,B3 domain-containing protein At1g43171,Putative B3 domain-containing protein At2g21920,B3 domain-containing protein At5g54067 23668,12801,32239,14270 Putative B3 domain-containing protein At1g50220,B3 domain-containing protein At1g43171,Putative B3 domain-containing protein At2g21920,B3 domain-containing protein At5g54067 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2011942;,locus:4515102647;,locus:2052546;,locus:504954911; AT1G50220,AT1G43171,AT2G21920,AT5G54067 B3 domain-containing protein NA NA NA NA NA NA NA ENOG411EHDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: fission 1 NA NA NA NA NA NA NA ENOG411EHDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE508 protein (Os05g0512301 protein) A8R3Q5 A8R3Q5_ORYSJ OsCLE508 Os05g0512301 OSNPB_050512301 ENOG411EHDV Q6NM39,Q9C7Z5 Q6NM39_ARATH,Q9C7Z5_ARATH At1g48070 (Thioredoxin superfamily protein),Thioredoxin superfamily protein (Uncharacterized protein T2J15.15) 15883,12548 At1g48070 (Thioredoxin superfamily protein),Thioredoxin superfamily protein (Uncharacterized protein T2J15.15) locus:2202628; AT1G48070 NA NA NA NA NA NA NA NA ENOG411EHDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EHDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Apoptosis-inducing factor homolog Os02g0150300 protein (Fragment) Q0E3X3 Q0E3X3_ORYSJ Os02g0150300 Os02g0150300 OSNPB_020150300 ENOG411EKET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-grasp domain NA NA NA NA NA NA NA ENOG411EKEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 NA NA NA NA NA NA NA ENOG411EKEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Paired amphipathic helix repeat NA NA NA NA NA NA NA ENOG411EKEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: major facilitator superfamily domain containing 12 Lactose permease, putative, expressed (Os03g0168000 protein) (Putative sugar transport protein) (cDNA clone:J023144O03, full insert sequence),Os06g0628032 protein Q8S7U2,A0A0P0WZ43 Q8S7U2_ORYSJ,A0A0P0WZ43_ORYSJ OSJNBa0091P11.34 LOC_Os03g07170 Os03g0168000 OSNPB_030168000,Os06g0628032 OSNPB_060628032 ENOG411EKEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytosine specific DNA methyltransferase replication foci domain NA NA NA NA NA NA NA ENOG411EKEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EKEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DS8I IRX9H Q9SXC4 IRX9H_ARATH Probable beta-1,4-xylosyltransferase IRX9H (EC 2.4.2.-) (Protein IRREGULAR XYLEM 9 homolog) (Xylan xylosyltransferase IRX9H) FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone. {ECO:0000269|PubMed:20335400, ECO:0000269|PubMed:20424005}. ARA:AT1G27600-MONOMER; 2.4.2.- 45187 Probable beta-1,4-xylosyltransferase IRX9H (EC 2.4.2.-) (Protein IRREGULAR XYLEM 9 homolog) (Xylan xylosyltransferase IRX9H) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity [GO:0015018]; xylosyltransferase activity [GO:0042285]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834]; pollen exine formation [GO:0010584]; xylan biosynthetic process [GO:0045492] TISSUE SPECIFICITY: Expressed in developing interfascicular fibers and xylem cells in stems and developing secondary xylem in roots. {ECO:0000269|PubMed:20335400}. locus:2196899; AT1G27600 43 protein Probable glucuronosyltransferase Os10g0205300 (EC 2.4.-.-) Q8S626 GT102_ORYSJ Os10g0205300 LOC_Os10g13810 OsJ_31015 OSJNBb0048O22.10 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411DTFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411DS8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0586800 protein A0A0P0X8G7 A0A0P0X8G7_ORYSJ Os07g0586800 OSNPB_070586800 ENOG411EKE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKE5 Q9XI12 Q9XI12_ARATH At1g21660 (Auxilin-like protein) (Chaperone DnaJ-domain superfamily protein) (F8K7.8 protein) 56911 At1g21660 (Auxilin-like protein) (Chaperone DnaJ-domain superfamily protein) (F8K7.8 protein) vesicle [GO:0031982]; receptor-mediated endocytosis [GO:0006898] locus:2036967; AT1G21660 DnaJ domain NA NA NA NA NA NA NA ENOG411EKE2 JAC1 Q9C9Q4 JAC1_ARATH J domain-containing protein required for chloroplast accumulation response 1 DISRUPTION PHENOTYPE: Lacks the chloroplast accumulation response under weak blue light and chloroplast movement in darkness, but shows a normal avoidance response under strong blue light. Non biased distribution of chloroplast actin (Cp-actin) filaments. {ECO:0000269|PubMed:16113208, ECO:0000269|PubMed:20562448, ECO:0000269|PubMed:21737483}. Abnormal chloroplast movement under weak blue light and in the dark-M. Wada-2005 FUNCTION: Required for chloroplast photorelocation movement; chloroplast accumulation upon low blue light and for chloroplast movement to the bottom of cells in darkness, by modulating chloroplast actin (Cp-actin) filaments distribution, appearance and disappearance. May mediate a slight resistance to aluminum in root hair cells. {ECO:0000269|PubMed:16113208, ECO:0000269|PubMed:17150990, ECO:0000269|PubMed:20562448, ECO:0000269|PubMed:21737483}. 71602 J domain-containing protein required for chloroplast accumulation response 1 cytoplasm [GO:0005737]; vesicle [GO:0031982]; actin filament organization [GO:0007015]; cellular response to blue light [GO:0071483]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]; receptor-mediated endocytosis [GO:0006898] TISSUE SPECIFICITY: Expressed in leaves and stems, but not in roots. {ECO:0000269|PubMed:16113208}. locus:2037256; AT1G75100 NA Expressed protein (Os03g0198300 protein) (cDNA clone:J013020D08, full insert sequence) (cDNA clone:J013089P22, full insert sequence) Q10QF7 Q10QF7_ORYSJ LOC_Os03g10180 Os03g0198300 OsJ_09789 OSNPB_030198300 ENOG411EKE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EKE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: DnaJ (Hsp40) homolog subfamily C member 6 NA NA NA NA NA NA NA ENOG411EMB7 Q9SZ62,F4JPV2,A0A1P8B446,A0A1P8B456,A0A1P8B464,F4JPV0 Q9SZ62_ARATH,F4JPV2_ARATH,A0A1P8B446_ARATH,A0A1P8B456_ARATH,A0A1P8B464_ARATH,F4JPV0_ARATH At4g11970 (Uncharacterized protein AT4g11970) (Uncharacterized protein F16J13.40) (YTH family protein),YTH family protein 40677,50491,43213,32085,29549,43579 At4g11970 (Uncharacterized protein AT4g11970) (Uncharacterized protein F16J13.40) (YTH family protein),YTH family protein RNA binding [GO:0003723],integral component of membrane [GO:0016021]; RNA binding [GO:0003723] locus:2118046; AT4G11970 YT521-B-like domain NA NA NA NA NA NA NA ENOG411DS8Q CYCD4-2,CYCD4-1,CYCD2-1,CYCD4:1,CYCD2:1,CYCD4:2 Q0WQN9,Q8LGA1,P42752,F4KHY3,F4IJJ3,F4KHY4,A0A1P8BD64,A0A1P8BGJ6 CCD42_ARATH,CCD41_ARATH,CCD21_ARATH,F4KHY3_ARATH,F4IJJ3_ARATH,F4KHY4_ARATH,A0A1P8BD64_ARATH,A0A1P8BGJ6_ARATH Cyclin-D4-2 (G1/S-specific cyclin-D4-2) (CycD4;2),Cyclin-D4-1 (G1/S-specific cyclin-D4-1) (CycD4;1),Cyclin-D2-1 (Cyclin-delta-2) (Cyclin-d2) (G1/S-specific cyclin-D2-1) (CycD2;1),CYCLIN D41,Cyclin D21,Cyclin d42 During germination the onset of cell proliferation in root tips is significantly delayed and the overall numbers of dividing cells are reduced. The delay in cell cycle activation is linked to delayed radicle emergence. Decreased stomatal density-M. Umeda-2007,Few lateral roots-J. Murray-2009 FUNCTION: May promote cell division. {ECO:0000269|PubMed:16408177}.,FUNCTION: May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion. {ECO:0000269|PubMed:16227434}.,FUNCTION: Acts on the G1 phase of the cell cycle to control cell division rate in both shoot and root meristems. The complex formed with CDKA-1 phosphorylates plant retinoblastoma protein. {ECO:0000269|PubMed:10850717, ECO:0000269|PubMed:11722776}. 33776,34716,40580,35916,40708,27796,30687,25732 Cyclin-D4-2 (G1/S-specific cyclin-D4-2) (CycD4;2),Cyclin-D4-1 (G1/S-specific cyclin-D4-1) (CycD4;1),Cyclin-D2-1 (Cyclin-delta-2) (Cyclin-d2) (G1/S-specific cyclin-D2-1) (CycD2;1),CYCLIN D41,Cyclin D21,Cyclin d42 cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; stomatal lineage progression [GO:0010440],nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301],nucleus [GO:0005634]; response to sucrose [GO:0009744]; stomatal lineage progression [GO:0010440],nucleus [GO:0005634]; response to sucrose [GO:0009744],nucleus [GO:0005634] DEVELOPMENTAL STAGE: Expressed from the G1 to the S phase. {ECO:0000269|PubMed:16408177}.,DEVELOPMENTAL STAGE: Expressed throughout the cell cycle. Transiently expressed in the root tip during seed germination up to about 21 hours after stratification. Expressed during lateral root primordia formation, vascular tissue development, in fertilized ovules, and torpedo- and heart-stage embryos. {ECO:0000269|PubMed:10420643, ECO:0000269|PubMed:12857813, ECO:0000269|PubMed:16227434}.,DEVELOPMENTAL STAGE: Expressed throughout the cell cycle. {ECO:0000269|PubMed:16517759}. TISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia vascular tissues and tapetum of anthers. {ECO:0000269|PubMed:10420643, ECO:0000269|PubMed:12857813}.,TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:7696881}. locus:2142504;,locus:2168252;,locus:2041193; AT5G10440,AT5G65420,AT2G22490 cyclin-dependent protein kinase regulator Cyclin-D4-2 (G1/S-specific cyclin-D4-2) (CycD4;2),Cyclin-D4-1 (G1/S-specific cyclin-D4-1) (CycD4;1),Cyclin-D3-1 (G1/S-specific cyclin-D3-1) (CycD3;1),Os09g0466100 protein (Fragment) Q4KYM5,Q6YXH8,Q69QB8,A0A0P0XNQ4 CCD42_ORYSJ,CCD41_ORYSJ,CCD31_ORYSJ,A0A0P0XNQ4_ORYSJ CYCD4-2 Os08g0479300 LOC_Os08g37390 OJ1113_A10.14 OsJ_026575,CYCD4-1 OSCYCD Os09g0466100 LOC_Os09g29100 OJ1005_D12.23-1 OJ1005_D12.23-2 OsJ_028521,CYCD3-1 Os06g0217900 LOC_Os06g11410 P0644A02.8,Os09g0466100 OSNPB_090466100 ENOG411E45G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0385900 protein (Putative transformer-SR ribonucleoprotein) (cDNA clone:J023069P08, full insert sequence) Q6YW54 Q6YW54_ORYSJ Os08g0385900 B1090H08.54 OSNPB_080385900 P0434E03.1 ENOG411E45I MBD4L Q0IGK1 MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein (EC 3.2.2.-) (Protein MBD4-like) FUNCTION: Monofunctional DNA glycosylase targeting U:G and T:G mispairs (PubMed:23994068). Excises uracil derivatives and exhibits a preference for a CpG sequence context, irrespective of the methylation status of the complementary strand (PubMed:23994068). The activity follows a biphasic kinetics, with an initial burst of product accumulation followed by a slower phase (PubMed:23994068). Specifically binds its reaction product (PubMed:23994068). Triggers the base excision repair (BER) pathway (PubMed:25900572). {ECO:0000269|PubMed:23994068, ECO:0000269|PubMed:25900572}. R-ATH-110329;R-ATH-110357; 3.2.2.- 51135 Methyl-CpG-binding domain protein 4-like protein (EC 3.2.2.-) (Protein MBD4-like) nucleus [GO:0005634]; DNA binding [GO:0003677]; hydrolase activity [GO:0016787]; DNA repair [GO:0006281]; response to radiation [GO:0009314] TISSUE SPECIFICITY: Isoform 1 and isoform 4: Expressed in leaves and flowers, but not in roots or stems. {ECO:0000269|PubMed:25900572}. locus:2077357; AT3G07930 HhH-GPD superfamily base excision DNA repair protein Os09g0101100 protein Q0J3K2 Q0J3K2_ORYSJ Os09g0101100 OSNPB_090101100 ENOG411E45M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411E45V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E45Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os07g0204000 protein (Putative AP2 domain containing protein RAP2.11) Q7XB68 Q7XB68_ORYSJ P0431A02.20 Os07g0204000 OSNPB_070204000 ENOG411E24V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os02g0458900 protein (Fragment) A0A0P0VIN4 A0A0P0VIN4_ORYSJ Os02g0458900 OSNPB_020458900 ENOG411EGHW SMR15 Q1G3Y4 SMR15_ARATH Cyclin-dependent protein kinase inhibitor SMR15 (Protein SIAMESE-RELATED 15) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250|UniProtKB:Q9LZ78}. 11711 Cyclin-dependent protein kinase inhibitor SMR15 (Protein SIAMESE-RELATED 15) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:4515102692; AT1G60783 NA NA NA NA NA NA NA NA ENOG411EJ44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like NA NA NA NA NA NA NA ENOG411E1YE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0150200 protein (Os06g0150300 protein) (cDNA clone:J023138L23, full insert sequence) Q5VNC9 Q5VNC9_ORYSJ Os06g0150300 Os06g0150200 OSNPB_060150300 P0710H01.12 ENOG411E1YD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SprT-like family Os09g0407300 protein (cDNA clone:J023006A15, full insert sequence) (cDNA clone:J033150M17, full insert sequence) Q69MX9 Q69MX9_ORYSJ Os09g0407300 Os09g0407300 OJ1261_A08.50 OsJ_29307 OSNPB_090407300 P0465E03.2 ENOG411E1YG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA galactosyl transferase GMA12/MNN10 family NA NA NA NA NA NA NA ENOG411E1YF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FKBP-type peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q657L8,Q657L7,Q6K5Q1,Q656V1,Q657L6 Q657L8_ORYSJ,Q657L7_ORYSJ,Q6K5Q1_ORYSJ,Q656V1_ORYSJ,Q657L6_ORYSJ P0468H06.14-1 Os01g0563000 OsJ_02248 OSNPB_010563000,P0468H06.14-2 Os01g0563000 OSNPB_010563000,Os02g0491400 Os02g0491400 OSJNBa0048K16.32 OSNPB_020491400 P0579G08.8,Os01g0564300 Os01g0564300 OSJNBb0049O23.3 OSNPB_010564300,P0468H06.14-3 Os01g0563000 OSNPB_010563000 ENOG411E1YA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic leucine-zipper C terminal NA NA NA NA NA NA NA ENOG411E1YC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0431000 protein (Fragment) Q0JD52 Q0JD52_ORYSJ Os04g0431000 Os04g0431000 OSNPB_040431000 ENOG411E1YB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain Caffeate O-methyltransferase-like protein 2 (OsCOMTL2) (EC 2.1.1.-),Probable inactive methyltransferase Os04g0175900 (EC 2.1.1.-),Naringenin 7-O-methyltransferase (NOMT) (OsNOMT) (EC 2.1.1.232),Naringenin 7-O-methyltransferase (Os12g0240900 protein),OSJNBa0039G19.10 protein (Os04g0175600 protein) (cDNA clone:J013102F20, full insert sequence),Os04g0176200 protein,Os12g0202700 protein (Fragment) Q7XXI9,Q7XXD4,Q0IP69,I2FFE9,Q7XXD3,A0A0P0W7B2,A0A0P0Y7X4 OMTL2_ORYSJ,METL_ORYSJ,NOMT_ORYSJ,I2FFE9_ORYSJ,Q7XXD3_ORYSJ,A0A0P0W7B2_ORYSJ,A0A0P0Y7X4_ORYSJ COMTL2 Os04g0104900 LOC_Os04g01470 OSJNBa0094O15.13,Os04g0175900 LOC_Os04g09654 OSJNBa0039G19.11,Os12g0240900 LOC_Os12g13810,OsNOMT Os12g0240900 OSNPB_120240900,Os04g0175600 Os04g0175600 OsJ_14001 OSJNBa0039G19.10 OSNPB_040175600,Os04g0176200 OSNPB_040176200,Os12g0202700 OSNPB_120202700 FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase involved in the biosynthesis of the sakuranetin, an inducible defense mechanism of O.sativa against pathogen attack. {ECO:0000269|PubMed:22493492}. MISCELLANEOUS: Identified in a screen to identify naringenin 7-O-methyltransferase. However, it does not show such activity (PubMed:22493492). {ECO:0000305|PubMed:22493492}. ENOG411E1YM Q9ZQD8 Q9ZQD8_ARATH At2g15760 (Calmodulin-binding protein (DUF1645)) (Expressed protein) (Uncharacterized protein F19G14.24/At2g15760) 35053 At2g15760 (Calmodulin-binding protein (DUF1645)) (Expressed protein) (Uncharacterized protein F19G14.24/At2g15760) plasma membrane [GO:0005886] locus:2044631; AT2G15760 calmodulin-binding protein NA NA NA NA NA NA NA ENOG411E1YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Putative protein phosphatase 2C 63 (OsPP2C63) (EC 3.1.3.16),Os07g0516100 protein Q0D629,A0A0P0X6R4 P2C63_ORYSJ,A0A0P0X6R4_ORYSJ Os07g0516100 LOC_Os07g33230,Os07g0516100 OSNPB_070516100 ENOG411E1YH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0200700 protein (cDNA clone:002-168-F12, full insert sequence) Q6L4Q8 Q6L4Q8_ORYSJ Os05g0200700 Os05g0200700 OSNPB_050200700 P0708D12.4 ENOG411E1YK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0284500 protein A0A0P0W844 A0A0P0W844_ORYSJ Os04g0284500 OSNPB_040284500 ENOG411E1YJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) E3 ubiquitin-protein ligase Os04g0590900 (EC 2.3.2.27) (RING-H2 finger protein Os04g0590900) (RING-type E3 ubiquitin transferase Os04g0590900),Os02g0692000 protein (Zinc finger (C3HC4-type RING finger)-like) (cDNA clone:J023072K15, full insert sequence) Q7XLY8,Q6Z8A6 ATL41_ORYSJ,Q6Z8A6_ORYSJ Os04g0590900 LOC_Os04g50100 OsJ_15972 OSJNBa0086O06.21,Os02g0692000 OJ1148_D05.15 OSNPB_020692000 P0017H11.3 FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. {ECO:0000269|PubMed:16186120}. ENOG411E1YT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os02g0104500 protein (Fragment) A0A0P0VDM9 A0A0P0VDM9_ORYSJ Os02g0104500 OSNPB_020104500 ENOG411E1YW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA monocopper oxidase-like protein SKU5-like NA NA NA NA NA NA NA ENOG411E1YV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os04g0417600 protein (Fragment) A0A0P0WA21 A0A0P0WA21_ORYSJ Os04g0417600 OSNPB_040417600 ENOG411E1YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os02g0285700 protein A0A0P0VHN8 A0A0P0VHN8_ORYSJ Os02g0285700 OSNPB_020285700 ENOG411E1YP PIF3 O80536 PIF3_ARATH Transcription factor PIF3 (Basic helix-loop-helix protein 8) (AtbHLH8) (bHLH 8) (Phytochrome-associated protein 3) (Phytochrome-interacting factor 3) (Transcription factor EN 100) (bHLH transcription factor bHLH008) Mutant plants contained chlorophyll amounts comparable to those of the wild-type controls.,The mutant responds hypersensitively to red light but normally to far-red light for the inhibition of hypocotyl elongation.,Under red and far-red light growth conditions mutant plants have larger than normal cotyledons.,When grown under constant red light the mutant had shorter hypocotyls compared with wild type plants.,Under constant red-light conditions the hypocotyl length of the double mutant was intermediate to that of the parental single mutants.,When grown under red light double mutants had a short hypocotyl length similar to that of the pif3 single mutant whereas the pil5 pif3 double mutant grown under far-red light had short hypocotyl length similar to that of the pil5 single mutant. Compared with wild-type seedlings higher percentages of double mutant seedlings grew flat in the dark i.e. inhibition of hypocotyl negative gravitropism was observed in the dark in the double mutant (similar to pil5 single mutant). Short hypocotyl; Sensitive to red light; Dwarf, open cotyledons and no apical hook in the dark-G. Choi-2003 FUNCTION: Transcription factor acting positively in the phytochrome signaling pathway. Activates transcription by binding to the G box (5'-CACGTG-3'). {ECO:0000269|PubMed:10466729, ECO:0000269|PubMed:10797009}. 56990 Transcription factor PIF3 (Basic helix-loop-helix protein 8) (AtbHLH8) (bHLH 8) (Phytochrome-associated protein 3) (Phytochrome-interacting factor 3) (Transcription factor EN 100) (bHLH transcription factor bHLH008) nucleus [GO:0005634]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; de-etiolation [GO:0009704]; gibberellic acid mediated signaling pathway [GO:0009740]; positive regulation of anthocyanin metabolic process [GO:0031539]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; response to red or far red light [GO:0009639]; transcription, DNA-templated [GO:0006351] locus:2012345; AT1G09530 Transcription factor Os01g0286100 protein (Fragment) A0A0P0V1Q1 A0A0P0V1Q1_ORYSJ Os01g0286100 OSNPB_010286100 ENOG411E1YS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0818800 protein A0A0P0VRC2 A0A0P0VRC2_ORYSJ Os02g0818800 OSNPB_020818800 ENOG411E1YR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase Os05g0102000 protein (cDNA clone:002-116-E07, full insert sequence) Q9FW31 Q9FW31_ORYSJ Os05g0102000 OSNPB_050102000 P0036D10.11 ENOG411E1YY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0280100 protein,Os10g0568000 protein (Fragment),Os04g0279700 protein B9FE78,A0A0P0XXW8,A0A0P0W8B6 B9FE78_ORYSJ,A0A0P0XXW8_ORYSJ,A0A0P0W8B6_ORYSJ Os04g0280100 OsJ_14113 OSNPB_040280100,Os10g0568000 OSNPB_100568000,Os04g0279700 OSNPB_040279700 ENOG411E1YX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os04g0449100 protein (cDNA clone:002-173-D11, full insert sequence),OSJNBa0064H22.19 protein (Os04g0449200 protein) (cDNA clone:J033055I24, full insert sequence),Os02g0453400 protein Q0JCU5,Q7XV28,A0A0P0VIM9 Q0JCU5_ORYSJ,Q7XV28_ORYSJ,A0A0P0VIM9_ORYSJ Os04g0449100 Os04g0449100 OSNPB_040449100,Os04g0449200 OSJNBa0064H22.19 OSNPB_040449200,Os02g0453400 OSNPB_020453400 ENOG411E1YZ SR45 Q9SEE9,A0A1P8APZ9,A0A1P8APW3,A0A1P8APZ4 SR45_ARATH,A0A1P8APZ9_ARATH,A0A1P8APW3_ARATH,A0A1P8APZ4_ARATH Serine/arginine-rich splicing factor SR45 (At-SR45) (AtSR45),Arginine/serine-rich 45 DISRUPTION PHENOTYPE: Several developmental defects, including defects in flower and leaf morphology (petal development), delayed flowering time and root growth. Hypersensitivity to glucose (Glc) and to abscisic acid (ABA) during early seedling growth, accompanied with an enhanced ability to accumulate ABA in response to Glc. DNA methylation establishment and maintenance defects. Altered alternative splicing pattern of several related SR genes. {ECO:0000269|PubMed:17534421, ECO:0000269|PubMed:19403727, ECO:0000269|PubMed:20699397, ECO:0000269|PubMed:22274613}. Semi-dwarf; Increased branching; Abnormal leaf and flower morphology; Slow root growth; Late flowering; Abnormal seedling growth in response to glucose-A. Reddy-2007 FUNCTION: Involved in 5' and 3' splicing site selection of introns, and may bridge the 5' and 3' components of the spliceosome. Isoform 1 is required during flower petal development and isoform 2 is involved in root growth. Regulates negatively glucose and abscisic acid (ABA) signaling during early seedling development. Involved in the RNA-directed DNA methylation pathway (PubMed:22274613). {ECO:0000269|PubMed:17534421, ECO:0000269|PubMed:19403727, ECO:0000269|PubMed:20699397, ECO:0000269|PubMed:22274613, ECO:0000269|PubMed:22563826}. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}. R-ATH-72163;R-ATH-975957; 45348,42677,41978,42171 Serine/arginine-rich splicing factor SR45 (At-SR45) (AtSR45),Arginine/serine-rich 45 nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; spliceosomal complex [GO:0005681]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380]; sugar mediated signaling pathway [GO:0010182],RNA binding [GO:0003723] TISSUE SPECIFICITY: Especially present in actively growing regions and dividing cells. Mostly expressed in roots (primary and secondary root meristem), shoot apical meristem (SAM), leaf primordia, pollen and inflorescence, and, to a lower extent, in leaves, vascular tissue, hydathode and fruits. {ECO:0000269|PubMed:10593939, ECO:0000269|PubMed:14675452, ECO:0000269|PubMed:19403727}. locus:2017948; AT1G16610 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E1Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein Os10g0464800 protein A0A0P0XVD7 A0A0P0XVD7_ORYSJ Os10g0464800 OSNPB_100464800 ENOG411E1Y4 EXO70H8,EXO70H7 Q9SIB0,Q9FN91,F4KJ98 Q9SIB0_ARATH,Q9FN91_ARATH,F4KJ98_ARATH At2g28650 (Exocyst subunit exo70 family protein H8) (Uncharacterized protein At2g28650),AT5g59730/mth12_130 (Exocyst subunit exo70 family protein H7) (Gb|AAD24370.1) (Uncharacterized protein At5g59730),Exocyst subunit exo70 family protein H7 R-ATH-5620916; 64800,71226,71233 At2g28650 (Exocyst subunit exo70 family protein H8) (Uncharacterized protein At2g28650),AT5g59730/mth12_130 (Exocyst subunit exo70 family protein H7) (Gb|AAD24370.1) (Uncharacterized protein At5g59730),Exocyst subunit exo70 family protein H7 exocyst [GO:0000145]; exocytosis [GO:0006887],cytosol [GO:0005829]; exocyst [GO:0000145]; nucleus [GO:0005634]; exocytosis [GO:0006887] locus:2065479;,locus:2174279; AT2G28650,AT5G59730 exocyst subunit exo70 family protein h7 NA NA NA NA NA NA NA ENOG411E1Y7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os01g0598400 protein (cDNA clone:002-148-E10, full insert sequence) Q0JLI0 Q0JLI0_ORYSJ Os01g0598400 Os01g0598400 OsJ_02479 OSNPB_010598400 ENOG411E1Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger C3HC4 type domain containing protein expressed Os04g0185500 protein (cDNA clone:J013000P06, full insert sequence) Q0JEY1 Q0JEY1_ORYSJ Os04g0185500 Os04g0185500 OSNPB_040185500 ENOG411E1Y1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E1Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0274300 protein B9FWL6 B9FWL6_ORYSJ Os07g0274300 OsJ_23822 OSNPB_070274300 ENOG411E1Y3 Q9M2W8,F4IZ87 Y3990_ARATH,F4IZ87_ARATH BTB/POZ domain-containing protein At3g49900,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 57948,58331 BTB/POZ domain-containing protein At3g49900,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:2097400; AT3G49900 BTB POZ domain-containing protein Os07g0587250 protein,Os07g0587200 protein (Fragment) A0A0P0X8D6,A0A0P0X868 A0A0P0X8D6_ORYSJ,A0A0P0X868_ORYSJ Os07g0587250 OSNPB_070587250,Os07g0587200 OSNPB_070587200 ENOG411E1Y2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os05g0369900 protein (cDNA clone:002-101-G07, full insert sequence),Leucine zipper protein-like (Os09g0347300 protein),Expressed protein (Os11g0572200 protein) (cDNA clone:002-147-C11, full insert sequence),Leucine zipper protein-like (Os08g0232700 protein) (cDNA clone:J023059K19, full insert sequence),Os05g0369100 protein,Os08g0229601 protein,Os05g0369500 protein (Fragment),Os05g0369700 protein (Fragment),Os05g0369300 protein (Fragment) B7E9F7,Q6ES92,Q2R2B3,Q6YYS2,B9FHI5,A3BQV4,A0A0P0WLE9,A0A0P0WLK4,A0A0P0WLH8 B7E9F7_ORYSJ,Q6ES92_ORYSJ,Q2R2B3_ORYSJ,Q6YYS2_ORYSJ,B9FHI5_ORYSJ,A3BQV4_ORYSJ,A0A0P0WLE9_ORYSJ,A0A0P0WLK4_ORYSJ,A0A0P0WLH8_ORYSJ Os05g0369900 OSNPB_050369900,Os09g0347300 Os09g0347300 OSNPB_090347300 P0512H04.16,LOC_Os11g36400 Os11g0572200 OSNPB_110572200,Os08g0232700 B1047A05.10 OsJ_26504 OSNPB_080232700 P0461A06.42,Os05g0369100 OsJ_18282 OSNPB_050369100,Os08g0229601 OsJ_26488 OSNPB_080229601,Os05g0369500 OSNPB_050369500,Os05g0369700 OSNPB_050369700,Os05g0369300 OSNPB_050369300 ENOG411E1Y9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Variant SH3 domain OSJNBa0011L07.8 protein (Os04g0539800 protein) (cDNA, clone: J065040F16, full insert sequence) Q7XR93 Q7XR93_ORYSJ Os04g0539800 OsJ_15623 OSJNBa0011L07.8 OSNPB_040539800 ENOG411E1Y8 CAS1 P38605,A0A1P8B2H6 CAS1_ARATH,A0A1P8B2H6_ARATH Cycloartenol synthase (AtCYC) (EC 5.4.99.8) (2,3-epoxysqualene--cycloartenol cyclase),Terpene cyclase/mutase family member (EC 5.4.99.-) DISRUPTION PHENOTYPE: Albino phenotype leading to lethality. {ECO:0000269|PubMed:18287026}. Null: Male gametophyte defective; Knockdown: Variegated seedlings; Fused cotyledons; Albino inflorescence nodes; Variegated or albino late flowers-H. Schaller-2008 FUNCTION: Converts oxidosqualene to cycloartenol and 1% parkeol. Involved in plastid biogenesis. Essential for the male gametophyte function. {ECO:0000269|PubMed:18287026}. ARA:AT2G07050-MONOMER;MetaCyc:AT2G07050-MONOMER; R-ATH-191273; 5.4.99.8; 5.4.99.8,5.4.99.- 86033,75523 Cycloartenol synthase (AtCYC) (EC 5.4.99.8) (2,3-epoxysqualene--cycloartenol cyclase),Terpene cyclase/mutase family member (EC 5.4.99.-) vacuole [GO:0005773]; cycloartenol synthase activity [GO:0016871]; pentacyclic triterpenoid biosynthetic process [GO:0019745]; pollen development [GO:0009555]; thylakoid membrane organization [GO:0010027],intramolecular transferase activity [GO:0016866] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, inflorescences and siliques. {ECO:0000269|PubMed:16531458}. locus:2060121; AT2G07050 Cycloartenol synthase Parkeol synthase (EC 5.4.99.47),Cycloartenol synthase (EC 5.4.99.8),Os02g0139500 protein (Fragment),Terpene cyclase/mutase family member (EC 5.4.99.-) H2KWF1,Q6Z2X6,A0A0N7KEN4,A0A0P0VEL0,A0A0N7KSJ7 PAKSY_ORYSJ,CAS_ORYSJ,A0A0N7KEN4_ORYSJ,A0A0P0VEL0_ORYSJ,A0A0N7KSJ7_ORYSJ Os11g0189600 LOC_Os11g08569 OsJ_33246,Os02g0139700 LOC_Os02g04710 OJ1679_B08.9,Os02g0139500 OSNPB_020139500,Os11g0189600 OSNPB_110189600 FUNCTION: Specifically mediates the conversion of oxidosqualene ((3S)-2,3-epoxy-2,3-dihydrosqualene) to parkeol. {ECO:0000269|PubMed:21526825}.,FUNCTION: Converts oxidosqualene ((3S)-2,3-epoxy-2,3-dihydrosqualene) to cycloartenol. {ECO:0000269|PubMed:21526825}. ENOG411EK2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EK2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EBI8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine carboxypeptidase-like NA NA NA NA NA NA NA ENOG411EBI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EBI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor bHLH25-like NA NA NA NA NA NA NA ENOG411EBI7 TBL28 Q94K00 TBL28_ARATH Protein trichome birefringence-like 28 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 49404 Protein trichome birefringence-like 28 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554]; response to freezing [GO:0050826] locus:2065069; AT2G40150 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411EBI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif Os03g0388500 protein (Fragment),Os07g0623100 protein (Fragment) Q0DRF9,Q0D4I9 Q0DRF9_ORYSJ,Q0D4I9_ORYSJ Os03g0388500 OSNPB_030388500,Os07g0623100 Os07g0623100 OSNPB_070623100 ENOG411EBI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBI2 O49408 O49408_ARATH RNA ligase/cyclic nucleotide phosphodiesterase family protein (Uncharacterized protein At4g18940) 22178 RNA ligase/cyclic nucleotide phosphodiesterase family protein (Uncharacterized protein At4g18940) 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [GO:0004113]; ligase activity [GO:0016874]; cyclic nucleotide metabolic process [GO:0009187] locus:2117114; AT4G18940 Cyclic phosphodiesterase-like protein NA NA NA NA NA NA NA ENOG411EBI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0202400 protein (Fragment) A0A0P0XCR4 A0A0P0XCR4_ORYSJ Os08g0202400 OSNPB_080202400 ENOG411EBI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Ferulate-5-hydroxylase (Os06g0349700 protein) A1IGU8 A1IGU8_ORYSJ OsF5HL Os06g0349700 OSNPB_060349700 ENOG411EBI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_11 NA NA NA NA NA NA NA ENOG411EBIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: progesterone receptor membrane component NA NA NA NA NA NA NA ENOG411EBIY MNA5.17 Q8RY57,Q9FKP6,F4KHY8,A0A1P8BGK1,B3H553 Q8RY57_ARATH,Q9FKP6_ARATH,F4KHY8_ARATH,A0A1P8BGK1_ARATH,B3H553_ARATH AT5g65440/MNA5_17 (Transmembrane protein),Transmembrane protein 118181,122660,126759,118944,114465 AT5g65440/MNA5_17 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2168272; AT5G65440 NA NA NA NA NA NA NA NA ENOG411EBIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase family NA NA NA NA NA NA NA ENOG411EBIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione peroxidase NA NA NA NA NA NA NA ENOG411EBIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EBIU Q94EG6 Y5224_ARATH Uncharacterized protein At5g02240 27103 Uncharacterized protein At5g02240 apoplast [GO:0048046]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; response to abscisic acid [GO:0009737] locus:2185228; AT5G02240 3-beta hydroxysteroid dehydrogenase/isomerase family NA NA NA NA NA NA NA ENOG411EBIR BGLU30,DIN2 Q9M1C9,A0A1I9LT24 BGL30_ARATH,A0A1I9LT24_ARATH Beta-glucosidase 30 (AtBGLU30) (EC 3.2.1.21) (Protein DARK INDUCIBLE 2) (Protein SENESCENCE-RELATED GENE 2),Glycosyl hydrolase superfamily protein ARA:AT3G60140-MONOMER; R-ATH-189085; 3.2.1.21 66920,53035 Beta-glucosidase 30 (AtBGLU30) (EC 3.2.1.21) (Protein DARK INDUCIBLE 2) (Protein SENESCENCE-RELATED GENE 2),Glycosyl hydrolase superfamily protein beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2101427; AT3G60140 dark inducible 2 NA NA NA NA NA NA NA ENOG411EBIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EBIP PRP1,PRP3 Q9FZ35,Q9LZJ7 PRP1_ARATH,PRP3_ARATH Proline-rich protein 1 (AtPRP1) (Protein ROOT HAIR SPECIFIC 7),Proline-rich protein 3 (AtPRP3) FUNCTION: May contribute to cell wall structure in root hairs. {ECO:0000250}.,FUNCTION: May contribute to cell wall structure in root hairs. {ECO:0000269|PubMed:10712533}. 36517,34417 Proline-rich protein 1 (AtPRP1) (Protein ROOT HAIR SPECIFIC 7),Proline-rich protein 3 (AtPRP3) cell wall [GO:0005618]; extracellular region [GO:0005576],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; cellular response to auxin stimulus [GO:0071365]; cellular response to calcium ion starvation [GO:0072732]; cellular response to ethylene stimulus [GO:0071369]; trichoblast differentiation [GO:0010054] DEVELOPMENTAL STAGE: After germination, present in root epidermis and root hairs localized around the transition zone marking the root/shoot junction. Later expressed in root epidermis and root hairs, mostly in the root zone forming new hairs. Absent from the root tip. In adult plants restricted to root hair development regions of the main root and lateral roots. {ECO:0000269|PubMed:10594096, ECO:0000269|PubMed:10712533}. TISSUE SPECIFICITY: Exclusively expressed in roots, especially in root hairs. {ECO:0000269|PubMed:10594096, ECO:0000269|PubMed:19448035}.,TISSUE SPECIFICITY: Exclusively expressed in roots, particularly in root hairs-containing regions, and especially in root hairs. {ECO:0000269|PubMed:10594096, ECO:0000269|PubMed:10712533, ECO:0000269|PubMed:17098810}. locus:2010990;,locus:2081730; AT1G54970,AT3G62680 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411EBIQ Q9LH98,A0A1I9LTR8,A0A1I9LTR9 Q9LH98_ARATH,A0A1I9LTR8_ARATH,A0A1I9LTR9_ARATH Transmembrane protein, putative (DUF1216) 232853,230659,218279 Transmembrane protein, putative (DUF1216) integral component of membrane [GO:0016021] locus:2098443; AT3G28770 Protein of unknown function (DUF1216) NA NA NA NA NA NA NA ENOG411EBIN F9K21.250,T6D9_120,F12M12_110 Q9M1E0,Q9M165,Q9LX81,F4JGV7 Q9M1E0_ARATH,Q9M165_ARATH,Q9LX81_ARATH,F4JGV7_ARATH Protein kinase superfamily protein (Uncharacterized protein F9K21.250),Protein kinase superfamily protein (Uncharacterized protein T6D9_120),Protein kinase superfamily protein (Protein kinase-like),Protein kinase superfamily protein 42334,42413,42454,11866 Protein kinase superfamily protein (Uncharacterized protein F9K21.250),Protein kinase superfamily protein (Uncharacterized protein T6D9_120),Protein kinase superfamily protein (Protein kinase-like),Protein kinase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2085677;,locus:2102684;,locus:2075246;,locus:4515103340; AT3G45670,AT3G45790,AT3G46140,AT4G04632 Mitogen-activated protein kinase kinase kinase NA NA NA NA NA NA NA ENOG411EBIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3444) DNAJ heat shock N-terminal domain-containing protein-like (Os01g0375100 protein) (cDNA clone:J033098J19, full insert sequence),Os11g0578250 protein (Fragment),Os11g0578225 protein,Os11g0574233 protein,Os11g0574200 protein Q5ZCV2,A0A0P0Y3Y3,A0A0P0Y3U0,A0A0N7KT40,A0A0P0Y3G7 Q5ZCV2_ORYSJ,A0A0P0Y3Y3_ORYSJ,A0A0P0Y3U0_ORYSJ,A0A0N7KT40_ORYSJ,A0A0P0Y3G7_ORYSJ Os01g0375100 B1045D11.39 B1111C09.4 OSNPB_010375100,Os11g0578250 OSNPB_110578250,Os11g0578225 OSNPB_110578225,Os11g0574233 OSNPB_110574233,Os11g0574200 OSNPB_110574200 ENOG411EBIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD NA NA NA NA NA NA NA ENOG411EBIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EBII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBIF O49332 TRNHE_ARATH Tropinone reductase homolog At2g30670 (EC 1.1.1.-) ARA:AT2G30670-MONOMER; 1.1.1.- 28026 Tropinone reductase homolog At2g30670 (EC 1.1.1.-) oxidoreductase activity [GO:0016491] locus:2054447; AT2G30670 Tropinone reductase NA NA NA NA NA NA NA ENOG411EBIG Q9FH63,F4JZ59 Q9FH63_ARATH,F4JZ59_ARATH At5g66250/K1L20_3 (Kinectin-like protein),Kinectin-like protein 34604,36958 At5g66250/K1L20_3 (Kinectin-like protein),Kinectin-like protein locus:2155006; AT5G66250 NA NA NA NA NA NA NA NA ENOG411EBID T20E23_170 Q570Y0,Q9SCR8,A0A1I9LTN0 Q570Y0_ARATH,Q9SCR8_ARATH,A0A1I9LTN0_ARATH ECA1 gametogenesis related family protein (Uncharacterized protein At1g44222),At3g50570 (Hydroxyproline-rich glycoprotein family protein) (Proline-rich protein) (Putative proline-rich protein),Hydroxyproline-rich glycoprotein family protein 25329,20559,23273 ECA1 gametogenesis related family protein (Uncharacterized protein At1g44222),At3g50570 (Hydroxyproline-rich glycoprotein family protein) (Proline-rich protein) (Putative proline-rich protein),Hydroxyproline-rich glycoprotein family protein locus:4010713522;,locus:2098750; AT1G44224,AT3G50570 Pfam:DUF784 NA NA NA NA NA NA NA ENOG411EBIE ATL9 O64763 ATL9_ARATH E3 ubiquitin-protein ligase ATL9 (EC 2.3.2.27) (RING-H2 finger protein ATL9) (RING-type E3 ubiquitin transferase ATL9) DISRUPTION PHENOTYPE: Susceptibility to powdery mildew pathogen E.cichoracearum. {ECO:0000269|PubMed:15923325}. Susceptible to powdery mildew-S. Somerville-2010 FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway. {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:15923325}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 41880 E3 ubiquitin-protein ligase ATL9 (EC 2.3.2.27) (RING-H2 finger protein ATL9) (RING-type E3 ubiquitin transferase ATL9) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; defense response to fungus [GO:0050832]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; response to chitin [GO:0010200] locus:2044757; AT2G35000 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EBIB T2E22.37 Q9LHH1 Q9LHH1_ARATH 50S ribosomal protein L10 (50S ribosomal protein L10, putative) (50S ribosomal protein L10, putative; 89815-90330) (At3g12370) (Ribosomal protein L10 family protein) (Uncharacterized protein At3g12370/T2E22_132) 19103 50S ribosomal protein L10 (50S ribosomal protein L10, putative) (50S ribosomal protein L10, putative; 89815-90330) (At3g12370) (Ribosomal protein L10 family protein) (Uncharacterized protein At3g12370/T2E22_132) cytosolic ribosome [GO:0022626]; large ribosomal subunit [GO:0015934]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412] locus:2092527; AT3G12370 Ribosomal protein L10 NA NA NA NA NA NA NA ENOG411EBIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CO_deh_flav_C NA NA NA NA NA NA NA ENOG411EBIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CDC37_C NA NA NA NA NA NA NA ENOG411E849 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin carboxyl-terminal hydrolase NA NA NA NA NA NA NA ENOG411E848 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4F5 protein family NA NA NA NA NA NA NA ENOG411E843 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E842 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0050O03.8 protein (Os04g0117100 protein) (cDNA clone:001-010-B01, full insert sequence) (cDNA clone:J033090J17, full insert sequence) Q7XT14 Q7XT14_ORYSJ Os04g0117100 OsJ_13576 OSJNBb0050O03.8 OSNPB_040117100 ENOG411E841 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411E840 Q9C7G9 Q9C7G9_ARATH Serine-type endopeptidase inhibitor (Uncharacterized protein At1g72060) (Uncharacterized protein F28P5.12) 8667 Serine-type endopeptidase inhibitor (Uncharacterized protein At1g72060) (Uncharacterized protein F28P5.12) integral component of membrane [GO:0016021]; serine-type endopeptidase inhibitor activity [GO:0004867]; response to oxidative stress [GO:0006979] locus:2030337; AT1G72060 serine-type endopeptidase inhibitor NA NA NA NA NA NA NA ENOG411E847 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF825) NA NA NA NA NA NA NA ENOG411E846 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0208200 protein (Fragment) C7J458 C7J458_ORYSJ Os06g0208200 Os06g0208200 OSNPB_060208200 ENOG411E845 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA amino acid NA NA NA NA NA NA NA ENOG411E844 Q9LW03 Q9LW03_ARATH At3g15760 (Cytochrome P450 family protein) 15260 At3g15760 (Cytochrome P450 family protein) integral component of membrane [GO:0016021] locus:2093277; AT3G15760 NA NA NA NA NA NA NA NA ENOG411E84K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA defensin-like protein NA NA NA NA NA NA NA ENOG411E84J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0796301 protein A0A0P0W459 A0A0P0W459_ORYSJ Os03g0796301 OSNPB_030796301 ENOG411E84I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0650700 protein Q67UQ8 Q67UQ8_ORYSJ Os06g0650700 Os06g0650700 OsJ_22178 OSNPB_060650700 P0453H04.30 ENOG411E84H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0198825 protein Q60E43 Q60E43_ORYSJ OSJNBa0007C23.10 Os05g0198825 OSNPB_050198825 ENOG411E84N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: RWP-RK domain-containing protein Os02g0308300 protein,Os08g0294800 protein Q6Z0W6,A0A0P0XDY1 Q6Z0W6_ORYSJ,A0A0P0XDY1_ORYSJ OSJNBb0026D20.15 Os02g0308300 OSNPB_020308300,Os08g0294800 OSNPB_080294800 ENOG411E84M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E84C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E84B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E84A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0103000 protein (cDNA clone:002-173-B08, full insert sequence) Q6ZFJ8 Q6ZFJ8_ORYSJ Os02g0103000 Os02g0103000 OJ1435_F07.27 OsJ_05005 OSNPB_020103000 ENOG411E84G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0815400 protein (cDNA clone:J023128J12, full insert sequence) Q5N756 Q5N756_ORYSJ Os01g0815400 OsJ_03858 OSJNBa0085D07.38 OSNPB_010815400 ENOG411E84F Q9C9L7 Q9C9L7_ARATH At1g69760 (Suppressor SRP40-like protein) (Uncharacterized protein At1g69760) (Uncharacterized protein T6C23.4) 19834 At1g69760 (Suppressor SRP40-like protein) (Uncharacterized protein At1g69760) (Uncharacterized protein T6C23.4) locus:2205025; AT1G69760 NA NA NA NA NA NA NA NA ENOG411E84E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E84D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: epidermal patterning factor-like protein Os05g0476400 protein Q0DHC3 Q0DHC3_ORYSJ Os05g0476400 Os05g0476400 OSNPB_050476400 ENOG411E84Y Q9LII3,Q9M9A2 Q9LII3_ARATH,Q9M9A2_ARATH AT3g18560/K24M9_5,At1g49000 (F27J15.21) (Transmembrane protein) 21876,17611 AT3g18560/K24M9_5,At1g49000 (F27J15.21) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2086934;,locus:2028456; AT3G18560,AT1G49000 NA NA NA NA NA NA NA NA ENOG411E84X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0271500 protein) (cDNA clone:002-156-F11, full insert sequence) (cDNA clone:J013157P04, full insert sequence) Q10NE9 Q10NE9_ORYSJ Os03g0271500 LOC_Os03g16470 Os03g0271500 OSNPB_030271500 ENOG411E84S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os02g0753700 protein Q6Z6A8 Q6Z6A8_ORYSJ Os02g0753700 Os02g0753700 OJ1288_G09.25 OSNPB_020753700 P0627E03.3 ENOG411E84R LTP1,LTP7 Q42589,Q9ZUK6 NLTP1_ARATH,NLTP7_ARATH Non-specific lipid-transfer protein 1 (LTP 1),Non-specific lipid-transfer protein 7 (LTP 7) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.,FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 11755,12995 Non-specific lipid-transfer protein 1 (LTP 1),Non-specific lipid-transfer protein 7 (LTP 7) apoplast [GO:0048046]; chloroplast thylakoid [GO:0009534]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; lipid binding [GO:0008289]; cell wall organization [GO:0071555]; lipid transport [GO:0006869],membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869] TISSUE SPECIFICITY: Expressed primarily in epidermal cells. locus:2064212;,locus:2055828; AT2G38540,AT2G15050 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues NA NA NA NA NA NA NA ENOG411E84Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Eukaryotic translation initiation factor 2 alpha kinase 4 NA NA NA NA NA NA NA ENOG411E84P Q6ID72,Q8LCV8,F4JTI5 Q6ID72_ARATH,Q8LCV8_ARATH,F4JTI5_ARATH At4g32110 (Beta-1,3-N-Acetylglucosaminyltransferase family protein),Beta-1,3-N-Acetylglucosaminyltransferase family protein 13689,13779,13472 At4g32110 (Beta-1,3-N-Acetylglucosaminyltransferase family protein),Beta-1,3-N-Acetylglucosaminyltransferase family protein transferase activity, transferring glycosyl groups [GO:0016757] locus:2116612;,locus:505006542;,locus:2116707; AT4G32110,AT4G32105,AT4G32100 Inherit from euNOG: galactosyltransferase LGC1, putative (Os11g0523200 protein) Q2R3F9 Q2R3F9_ORYSJ Os11g0523200 LOC_Os11g32070 OSNPB_110523200 ENOG411E84W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L51_S25_CI-B8 NA NA NA NA NA NA NA ENOG411E84U HIPP16,HIPP46 Q9SSF0,Q5PNZ7,A0A1P8BCF1,A0A1I9LQ00,F4K1M4 HIP16_ARATH,HIP46_ARATH,A0A1P8BCF1_ARATH,A0A1I9LQ00_ARATH,F4K1M4_ARATH Heavy metal-associated isoprenylated plant protein 16 (AtHIP16) (Farnesylated protein 4) (AtFP4),Heavy metal-associated isoprenylated plant protein 46 (AtHIP46) (Farnesylated protein 5) (AtFP5),Heavy metal transport/detoxification superfamily protein FUNCTION: Probable heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 17936,19761,21918,17570,18549 Heavy metal-associated isoprenylated plant protein 16 (AtHIP16) (Farnesylated protein 4) (AtFP4),Heavy metal-associated isoprenylated plant protein 46 (AtHIP46) (Farnesylated protein 5) (AtFP5),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2091112;,locus:2156253; AT3G07600,AT5G48290 NA NA NA NA NA NA NA NA ENOG411E84T JAL2,RTM1 Q9MA49,Q9SE37,A0A1P8APH7 JAL2_ARATH,JAL1_ARATH,A0A1P8APH7_ARATH Jacalin-related lectin 2,Protein RESTRICTED TEV MOVEMENT 1 (Jacalin-related lectin 1) (Restricted tobacco etch virus movement protein 1),Mannose-binding lectin superfamily protein DISRUPTION PHENOTYPE: Susceptible to systemic infection by tobacco etch virus (TEV). {ECO:0000269|PubMed:10618445, ECO:0000269|PubMed:9892709}. Susceptible to tobacco etch virus-J. Carrington-2000 FUNCTION: Required for the restriction of long-distance movement of the pathogenic tobacco etch virus (TEV) without causing a hypersensitive response or inducing systemic acquired resistance. {ECO:0000269|PubMed:10618445, ECO:0000269|PubMed:10760245, ECO:0000269|PubMed:20478894, ECO:0000269|PubMed:22723957, ECO:0000269|PubMed:9628015, ECO:0000269|PubMed:9892709}. 20173,19200,21968 Jacalin-related lectin 2,Protein RESTRICTED TEV MOVEMENT 1 (Jacalin-related lectin 1) (Restricted tobacco etch virus movement protein 1),Mannose-binding lectin superfamily protein carbohydrate binding [GO:0030246],cytoplasm [GO:0005737]; carbohydrate binding [GO:0030246]; protein self-association [GO:0043621]; defense response to virus [GO:0051607]; response to virus [GO:0009615]; transport of virus in host, tissue to tissue [GO:0046741] TISSUE SPECIFICITY: Expressed at low levels exclusively in phloem-associated cells (e.g. sieve elements and adjacent cells). {ECO:0000269|PubMed:11743111, ECO:0000269|PubMed:25081480}. locus:2198693;,locus:2198683; AT1G05770,AT1G05760 restricted tev movement 1 NA NA NA NA NA NA NA ENOG411DY81 F4J8L1 F4J8L1_ARATH C18orf8 76412 C18orf8 locus:2088624; AT3G12010 Colon cancer-associated protein Mic1-like Colon cancer-associated protein Mic1-like containing protein, expressed (Os10g0400900 protein),Os10g0400900 protein (Fragment) Q338I5,A0A0P0XTZ7 Q338I5_ORYSJ,A0A0P0XTZ7_ORYSJ Os10g0400900 LOC_Os10g26140 OSNPB_100400900,Os10g0400900 OSNPB_100400900 ENOG411DY80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os08g0398350 protein A0A0P0XFX5 A0A0P0XFX5_ORYSJ Os08g0398350 OSNPB_080398350 ENOG411DY83 Q9FL51 Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 95682 Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2169384; AT5G06940 probably inactive leucine-rich repeat receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DY82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frigida-like protein FRIGIDA-like protein,Os03g0587600 protein (Zinc knuckle containing protein) (Zinc knuckle family protein) Q10HH4,Q5W6L7,A0A0P0W0I1 Q10HH4_ORYSJ,Q5W6L7_ORYSJ,A0A0P0W0I1_ORYSJ Os03g0588200 LOC_Os03g39129 Os03g0588200 OsJ_11591 OSNPB_030588200,LOC_Os03g39040 Os03g0587600 OsJ_11584 OSJNBb0085A04.2 OSNPB_030587600,Os03g0588800 OSNPB_030588800 ENOG411DY85 DIM1A O22268 DIM1A_ARATH Ribosomal RNA small subunit methyltransferase (EC 2.1.1.-) (18S nuclear rRNA (adenine(1785)-N(6)/adenine(1786)-N(6))-dimethyltransferase) (Adenosine dimethyl transferase 1A) (Dimethyladenosine transferase 1A) FUNCTION: N6-adenine methyltransferase which modifies the AA dinucleotide at the plant nuclear 18S rRNA nucleotides A1785 and A1786 (PubMed:22829145). Required for generating appropriate patterns of gene expression during root development, including the cell-specific expression of transcriptional regulators involved in root hair and non-hair cells patterning (PubMed:22829145). {ECO:0000269|PubMed:22829145, ECO:0000305|PubMed:19929881}. MISCELLANEOUS: The inability to isolate a null mutant suggests that DIM1A is essential for viability. {ECO:0000305|PubMed:22829145}. 2.1.1.- 39687 Ribosomal RNA small subunit methyltransferase (EC 2.1.1.-) (18S nuclear rRNA (adenine(1785)-N(6)/adenine(1786)-N(6))-dimethyltransferase) (Adenosine dimethyl transferase 1A) (Dimethyladenosine transferase 1A) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; RNA binding [GO:0003723]; rRNA (adenine-N6,N6-)-dimethyltransferase activity [GO:0000179]; cell division [GO:0051301]; cell fate specification [GO:0001708] TISSUE SPECIFICITY: Expressed in rapidly dividing tissues, including root meristems and lateral root primordia, developing cotyledons and leaves, petals, anther, pollen grains and silique abscission zone. {ECO:0000269|PubMed:22829145}. locus:2061982; AT2G47420 dimethyladenosine rRNA adenine N(6)-methyltransferase (EC 2.1.1.-) Q10A12,Q0DC35 Q10A12_ORYSJ,Q0DC35_ORYSJ Os10g0183900 LOC_Os10g10434 Os10g0183900 OSNPB_100183900,Os06g0490000 Os06g0490000 OSNPB_060490000 ENOG411DY84 Q147R9 Q147R9_ARATH At1g19690 (NAD(P)-binding Rossmann-fold superfamily protein) 39752 At1g19690 (NAD(P)-binding Rossmann-fold superfamily protein) chloroplast [GO:0009507]; catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2035461; AT1G19690 Inherit from KOG: 46-dehydratase Os01g0261500 protein A0A0P0V0M8 A0A0P0V0M8_ORYSJ Os01g0261500 OSNPB_010261500 ENOG411DY87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Mitochondrial transcription termination factor-like (Os02g0749900 protein),Os11g0206600 protein (Fragment) Q6Z8K9,A0A0P0Y0U4 Q6Z8K9_ORYSJ,A0A0P0Y0U4_ORYSJ Os02g0749900 Os02g0749900 OsJ_08393 OSNPB_020749900 P0431B06.10,Os11g0206600 OSNPB_110206600 ENOG411DY86 QCT,QC Q84WV9,C0Z264,A0A1P8B755 QPCT_ARATH,C0Z264_ARATH,A0A1P8B755_ARATH Glutaminyl-peptide cyclotransferase (EC 2.3.2.5) (Glutaminyl cyclase),AT4G25720 protein (Glutaminyl cyclase),Glutaminyl cyclase DISRUPTION PHENOTYPE: No effect on 5-oxoproline production. {ECO:0000269|PubMed:18768907}. FUNCTION: Converts glutamine and N-terminal glutamyl residues in peptides to 5-oxoproline and 5-oxoproline residues. Not involved in the major pathway for 5-oxoproline production. {ECO:0000269|PubMed:17261077, ECO:0000269|PubMed:18768907}. MISCELLANEOUS: Has a low metal affinity, in contrast to the mammalian glutaminyl cyclases that contain one zinc ion per molecule. ARA:AT4G25720-MONOMER; 2.3.2.5 36269,28801,30907 Glutaminyl-peptide cyclotransferase (EC 2.3.2.5) (Glutaminyl cyclase),AT4G25720 protein (Glutaminyl cyclase),Glutaminyl cyclase endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; glutaminyl-peptide cyclotransferase activity [GO:0016603]; peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase [GO:0017186],glutaminyl-peptide cyclotransferase activity [GO:0016603]; peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase [GO:0017186] locus:2131391; AT4G25720 glutaminyl-peptide cyclotransferase-like Os06g0103700 protein (Putative glutamine cyclotransferase) (cDNA clone:J023041F14, full insert sequence),Os06g0103700 protein (Fragment) Q5VRH1,A0A0P0WRY3 Q5VRH1_ORYSJ,A0A0P0WRY3_ORYSJ Os06g0103700 Os06g0103700 OSJNBa0075G19.31 OSNPB_060103700,Os06g0103700 OSNPB_060103700 ENOG411DY88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) Os02g0125200 protein (Fragment) A0A0P0VEE1 A0A0P0VEE1_ORYSJ Os02g0125200 OSNPB_020125200 ENOG411DY8A FIP1 Q9SE96 GEML1_ARATH GEM-like protein 1 (Forming homology-interacting protein 1) (FH-interacting protein 1) 27958 GEM-like protein 1 (Forming homology-interacting protein 1) (FH-interacting protein 1) locus:2032185; AT1G28200 GEM-like protein FH protein interacting protein FIP1, putative, expressed (Os03g0187600 protein) (Putative FH protein interacting protein FIP1) (cDNA clone:J013130C18, full insert sequence) Q8H7P4 Q8H7P4_ORYSJ OJ1217B09.2 LOC_Os03g08860 Os03g0187600 OsJ_09706 OSNPB_030187600 ENOG411DY8C COL5 Q9FHH8 COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 38820 Zinc finger protein CONSTANS-LIKE 5 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] locus:2172545; AT5G57660 Zinc finger protein CONSTANS-LIKE NA NA NA NA NA NA NA ENOG411DY8B A0A1P8B0L2,F4IVX7 A0A1P8B0L2_ARATH,F4IVX7_ARATH Zinc finger C3H1 domain protein 177241,175853 Zinc finger C3H1 domain protein locus:2039797; AT2G39580 Putative zinc-finger domain Os12g0566500 protein (Fragment) A0A0N7KU83 A0A0N7KU83_ORYSJ Os12g0566500 OSNPB_120566500 ENOG411DY8G Q0WN01 PP286_ARATH Pentatricopeptide repeat-containing protein At3g58590 82690 Pentatricopeptide repeat-containing protein At3g58590 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2076456; AT3G58590 Pentatricopeptide repeat-containing protein Os01g0754700 protein (Os01g0754701 protein) (Pentatricopeptide (PPR) repeat-containing protein-like) Q5JML3 Q5JML3_ORYSJ Os01g0754700 Os01g0754701 OSNPB_010754700 P0503C12.24 ENOG411DY8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavonol synthase flavanone OSJNBa0033G05.6 protein (OSJNBa0063C18.20 protein) (Os04g0643500 protein) Q7X6V7 Q7X6V7_ORYSJ Os04g0643500 OSJNBa0033G05.6 OSJNBa0063C18.20 OSNPB_040643500 ENOG411DY8I APX5 Q7XZP5,A0A1P8B5P9 APX5_ARATH,A0A1P8B5P9_ARATH L-ascorbate peroxidase 5, peroxisomal (AtAPx04) (EC 1.11.1.11),Ascorbate peroxidase 5 FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ARA:AT4G35970-MONOMER; 1.11.1.11 30895,24713 L-ascorbate peroxidase 5, peroxisomal (AtAPx04) (EC 1.11.1.11),Ascorbate peroxidase 5 chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to reactive oxygen species [GO:0000302],heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] locus:2125409; AT4G35970 peroxidase Probable L-ascorbate peroxidase 3, peroxisomal (EC 1.11.1.11) (OsAPx3),Probable L-ascorbate peroxidase 4, peroxisomal (EC 1.11.1.11) (OsAPx4),Os09g0538600 protein (Fragment) Q0JEQ2,Q6ZJJ1,C7J6X6 APX3_ORYSJ,APX4_ORYSJ,C7J6X6_ORYSJ APX3 Os04g0223300 LOC_Os04g14680 OsJ_013310 OSJNBb0072N21.2,APX4 Os08g0549100 LOC_Os08g43560 OJ1479_B11.9,Os09g0538600 OSNPB_090538600 FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ENOG411DY8H Q9ZQ83,F4IT71 Q9ZQ83_ARATH,F4IT71_ARATH ELM2 domain-containing protein (Putative MYB family transcription factor),ELM2 domain-containing protein 51856,51757 ELM2 domain-containing protein (Putative MYB family transcription factor),ELM2 domain-containing protein locus:2063756; AT2G03470 MYB family transcription factor NA NA NA NA NA NA NA ENOG411DY8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C2H2 type Os03g0838800 protein A0A0P0W5D6 A0A0P0W5D6_ORYSJ Os03g0838800 OSNPB_030838800 ENOG411DY8J T20N10_150 Q9LXS2 Q9LXS2_ARATH Secretion-regulating guanine nucleotide exchange factor (Uncharacterized protein At3g58800/T20N10_150) (Uncharacterized protein T20N10_150) 39041 Secretion-regulating guanine nucleotide exchange factor (Uncharacterized protein At3g58800/T20N10_150) (Uncharacterized protein T20N10_150) integral component of membrane [GO:0016021] locus:2099059; AT3G58800 NA Os02g0230200 protein (cDNA clone:001-127-B03, full insert sequence),Os01g0748200 protein Q6H526,A0A0P0V899 Q6H526_ORYSJ,A0A0P0V899_ORYSJ Os02g0230200 OsJ_05978 OSJNBb0035N08.29 OSNPB_020230200,Os01g0748200 OSNPB_010748200 ENOG411DY8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0376700 protein (RING finger 1) Q9LRB6 Q9LRB6_ORYSJ RRF1 Os09g0376700 OSJNBa0041C07.12 OSNPB_090376700 P0711A01.26 ENOG411DY8Q Q949V7,A0A1I9LM78,A0A1I9LM77 Q949V7_ARATH,A0A1I9LM78_ARATH,A0A1I9LM77_ARATH Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein At3g59300),Pentatricopeptide repeat (PPR) superfamily protein 51592,47868,52452 Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein At3g59300),Pentatricopeptide repeat (PPR) superfamily protein cofactor binding [GO:0048037] locus:2081182; AT3G59300 Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DY8R UCH1,UCH2 Q9FFF2,O04482 UCH1_ARATH,UCH2_ARATH Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12),Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.4.19.12) DISRUPTION PHENOTYPE: No visible phenotype. Uch1 and uch2 double mutants are less fertile, accumulated less chlorophyll and have slightly fewer and shorter cauline branches. {ECO:0000269|PubMed:17559514}. Accumulated less chlorophyll than wild-type. Smaller and more compact rosettes than wild-type. More lanceolate cauline leaves. Less fertile. Under short day conditions the double mutant develops a less branched primary inflorescence. FUNCTION: Ubiquitin-protein hydrolase involved in the release of ubiquitin attached via both peptide and isopeptide linkages. Able to cleave 'Lys-48'-linked polyubiquitin chains. Involved in the direct or indirect regulation of AUX/IAA proteins stability (Probable). Acts as a linker between the TREX-2 complex and 26S proteasome (PubMed:22951400). {ECO:0000269|PubMed:22951400, ECO:0000303|PubMed:17559514}.,FUNCTION: Ubiquitin-protein hydrolase involved in the release of ubiquitin attached via both peptide and isopeptide linkages. Able to cleave 'Lys-48'-linked polyubiquitin chains. Involved in the direct or indirect regulation of AUX/IAA proteins stability (PubMed:17559514). Acts as a linker between the TREX-2 complex and 26S proteasome (PubMed:22951400). {ECO:0000269|PubMed:17559514, ECO:0000269|PubMed:22951400}. MISCELLANEOUS: UCH1 and UCH2 are not integral polypeptides of the 26S proteasome, unlike their S.pombe and animal orthologs (PubMed:17559514). However, they interact with the 26S proteasome lid complex as well as to the TREX-2 complex (PubMed:22951400). {ECO:0000269|PubMed:17559514, ECO:0000269|PubMed:22951400}. ARA:AT5G16310-MONOMER;,ARA:AT1G65650-MONOMER; R-ATH-5689603; 3.4.19.12 38539,37499 Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12),Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.4.19.12) cytoplasm [GO:0005737]; nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; shoot system morphogenesis [GO:0010016]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in leaves, stems, sepals, stamens, petals, roots, hypocotyls and cotyledons. {ECO:0000269|PubMed:17559514}. locus:2171312;,locus:2018516; AT5G16310,AT1G65650 ubiquitin carboxyl-terminal hydrolase Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12),Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12) (Fragment) Q6K6Z5,A0A0P0VRF4 Q6K6Z5_ORYSJ,A0A0P0VRF4_ORYSJ P0474F11.34-1 OJ1119_A01.19-1 Os02g0822200 OsJ_08921 OSNPB_020822200,Os02g0822200 OSNPB_020822200 ENOG411DY8U MNJ8.10 Q9FHT0,Q9SK34,F4K748 Q9FHT0_ARATH,Q9SK34_ARATH,F4K748_ARATH Serine/threonine-protein kinase RIO1 (EC 2.7.11.1),Serine/threonine-protein kinase Rio1 2.7.11.1 60320,61082,44641 Serine/threonine-protein kinase RIO1 (EC 2.7.11.1),Serine/threonine-protein kinase Rio1 ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2169140;,locus:2047411; AT5G37350,AT2G24990 Serine threonine-protein kinase Rio1 Serine/threonine-protein kinase RIO1 (EC 2.7.11.1) Q0D8G3 Q0D8G3_ORYSJ Os07g0162300 Os07g0162300 OSNPB_070162300 ENOG411DY8T Q84R09,A0A1P8B4B0 Q84R09_ARATH,A0A1P8B4B0_ARATH Glycosyltransferase (UDP-N-acetylglucosamine transferase subunit ALG14-like protein) (Uncharacterized protein At4g18230),UDP-N-acetylglucosamine transferase subunit ALG14-like protein R-ATH-446193; 26308,24188 Glycosyltransferase (UDP-N-acetylglucosamine transferase subunit ALG14-like protein) (Uncharacterized protein At4g18230),UDP-N-acetylglucosamine transferase subunit ALG14-like protein integral component of membrane [GO:0016021]; transferase activity [GO:0016740]; dolichol-linked oligosaccharide biosynthetic process [GO:0006488] locus:2141926; AT4G18230 UDP-N-acetylglucosamine transferase subunit ALG14 Os03g0423200 protein (Fragment) Q0DR32 Q0DR32_ORYSJ Os03g0423200 Os03g0423200 OSNPB_030423200 ENOG411DY8W PEX3-1,PEX3-2,PEX3 Q8LDG7,Q8S9K7,F4HYJ3,F4J7K3,F4J7K5 PEX31_ARATH,PEX32_ARATH,F4HYJ3_ARATH,F4J7K3_ARATH,F4J7K5_ARATH Peroxisome biogenesis protein 3-1 (Peroxin-3-1) (AtPEX3-1),Peroxisome biogenesis protein 3-2 (Peroxin-3-2) (AtPEX3-2),Peroxin 3,Peroxin 3-1 FUNCTION: Involved in morphology determination of peroxisomes, but not in import of peroxisomal matrix proteins. May act as a docking factor for PEX19 and be necessary for the import of peroxisomal membrane proteins in the peroxisomes. {ECO:0000269|PubMed:17478547}. R-ATH-1369062; 40680,41696,45476,42497,34317 Peroxisome biogenesis protein 3-1 (Peroxin-3-1) (AtPEX3-1),Peroxisome biogenesis protein 3-2 (Peroxin-3-2) (AtPEX3-2),Peroxin 3,Peroxin 3-1 integral component of peroxisomal membrane [GO:0005779]; peroxisome organization [GO:0007031]; protein transport [GO:0015031],integral component of peroxisomal membrane [GO:0005779]; peroxisome organization [GO:0007031] locus:504956187;,locus:2092747; AT3G18160,AT1G48635 peroxisome biogenesis protein 3-2-like Os09g0314300 protein (Peroxisomal biogenesis factor 3-like),Os09g0314300 protein Q69M23,A0A0N7KQJ6 Q69M23_ORYSJ,A0A0N7KQJ6_ORYSJ Os09g0314300 OsJ_28827 OSJNBb0079G12.17-1 OSNPB_090314300,Os09g0314300 OSNPB_090314300 ENOG411DY8V ATL43 Q5EAE9 ATL43_ARATH RING-H2 finger protein ATL43 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL43) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 45269 RING-H2 finger protein ATL43 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL43) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] AT5G05810 RING-H2 finger protein Os06g0695900 protein (Fragment) A0A0P0X0S9 A0A0P0X0S9_ORYSJ Os06g0695900 OSNPB_060695900 ENOG411DY8Y ND6 P60497 NU6M_ARATH NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH dehydrogenase subunit 6) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07731) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. ARA:ATMG00270-MONOMER; 1.6.5.3 23680 NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH dehydrogenase subunit 6) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137] ATMG00270 NADH-ubiquinone oxidoreductase chain 6 NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) Q8HCQ7 Q8HCQ7_ORYSJ nad6 ENOG411DY8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase Glutathione S-transferase (Glutathione S-transferase, C-terminal domain containing protein, expressed) (Os10g0543800 protein) (Putative glutathione S-transferase) Q7XCK0 Q7XCK0_ORYSJ OSJNBb0015I11.25 GST LOC_Os10g39740 Os10g0543800 OSNPB_100543800 ENOG411DY8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tropinone reductase NA NA NA NA NA NA NA ENOG411EGJK AGL97,T32M21_240 Q9C633,Q9LZ61 AGL97_ARATH,Q9LZ61_ARATH Agamous-like MADS-box protein AGL97,AGAMOUS-like 99 (MADS-box family protein) (MADS-box protein-like) FUNCTION: Putative transcription factor. 29853,36554 Agamous-like MADS-box protein AGL97,AGAMOUS-like 99 (MADS-box family protein) (MADS-box protein-like) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2825756;,locus:2184427; AT1G46408,AT5G04640 Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411EGJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EGJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED NA NA NA NA NA NA NA ENOG411EGJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EGJC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidyl-prolyl cis-trans isomerase FKBP-type NA NA NA NA NA NA NA ENOG411EGJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML25/26 (Calmodulin-like protein 25/26) Q2QYW1 CML25_ORYSJ CML25 Os11g0105000 LOC_Os11g01390 OsJ_033568; CML26 Os12g0104900 LOC_Os12g01400 OsJ_033577 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411EGJG Q9LFJ5,Q9LR55,A0A1P8ASQ4 Q9LFJ5_ARATH,Q9LR55_ARATH,A0A1P8ASQ4_ARATH Cathepsin-related (Cysteine proteinases superfamily protein) (Uncharacterized protein F2K13_230),Cysteine proteinases superfamily protein (F21B7.32),Cysteine proteinases superfamily protein 32676,30905,30091 Cathepsin-related (Cysteine proteinases superfamily protein) (Uncharacterized protein F2K13_230),Cysteine proteinases superfamily protein (F21B7.32),Cysteine proteinases superfamily protein extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603],cysteine-type peptidase activity [GO:0008234] locus:2148181;,locus:2020778; AT5G17080,AT1G03720 Papain family cysteine protease NA NA NA NA NA NA NA ENOG411EGJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EGJZ Q9SID6 Q9SID6_ARATH Uncharacterized protein At2g22320 12901 Uncharacterized protein At2g22320 locus:2060369; AT2G22320 NA NA NA NA NA NA NA NA ENOG411EGJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJR F4JC91 F4JC91_ARATH Putative endonuclease or glycosyl hydrolase 42833 Putative endonuclease or glycosyl hydrolase peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468] locus:2088145; AT3G13280 Has 66 Blast hits to 64 proteins in 5 species Archae - 0 NA NA NA NA NA NA NA ENOG411EGJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: integral membrane protein NA NA NA NA NA NA NA ENOG411EGJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3444) Os06g0535300 protein (Fragment) A0A0P0WXI5 A0A0P0WXI5_ORYSJ Os06g0535300 OSNPB_060535300 ENOG411EGJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nnf1 NA NA NA NA NA NA NA ENOG411EGJU CEP16 Q5S502 PCP16_ARATH Precursor of CEP16 (PCEP16) [Cleaved into: C-terminally encoded peptide 16 (CEP16)] FUNCTION: Extracellular signaling peptide that may regulate primary root growth rate and systemic nitrogen (N)-demand signaling. {ECO:0000250|UniProtKB:Q8L8Y3}. 11689 Precursor of CEP16 (PCEP16) [Cleaved into: C-terminally encoded peptide 16 (CEP16)] apoplast [GO:0048046]; hormone activity [GO:0005179]; multicellular organism development [GO:0007275]; nitrate import [GO:1902025]; regulation of root development [GO:2000280] locus:2007238; AT1G49800 NA NA NA NA NA NA NA NA ENOG411EGJ8 GRP17 Q9LY09,A0A1P8BDM8 GRP17_ARATH,A0A1P8BDM8_ARATH Oleosin GRP-17 (Glycine rich protein 17) (AtGRP-17) (Glycine rich protein 7) (AtGRP-7),Oleosin DISRUPTION PHENOTYPE: Delayed pollen hydration and impaired competitive ability due to a failure to interact with the stigma. {ECO:0000269|PubMed:10655594, ECO:0000269|PubMed:20033440}. FUNCTION: Lipid-binding oleosin pollen coat protein required to mediate pollen recognition by stigma cells and subsequent pollen hydration. {ECO:0000269|PubMed:10655594, ECO:0000269|PubMed:20033440}. 53193,50846 Oleosin GRP-17 (Glycine rich protein 17) (AtGRP-17) (Glycine rich protein 7) (AtGRP-7),Oleosin extracellular matrix [GO:0031012]; integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; pollen coat [GO:0070505]; proteinaceous extracellular matrix [GO:0005578]; lipid binding [GO:0008289]; lipid storage [GO:0019915]; pollen hydration [GO:0009859]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511] DEVELOPMENTAL STAGE: Mostly expressed in anthers at the later stage of flower development. {ECO:0000269|PubMed:8220457}. TISSUE SPECIFICITY: Flower specific, especially in pollen (at protein level). {ECO:0000269|PubMed:10655594, ECO:0000269|PubMed:11431566, ECO:0000269|PubMed:8220457}. locus:2183384; AT5G07530 Oleosin NA NA NA NA NA NA NA ENOG411EGJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0421300 protein A0A0P0XG15 A0A0P0XG15_ORYSJ Os08g0421300 OSNPB_080421300 ENOG411EGJ2 Q9C9T4 Q9C9T4_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein; 71816-72112) 10824 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein; 71816-72112) lipid transport [GO:0006869] locus:2027849; AT1G73780 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EGJ3 F4I0M0 F4I0M0_ARATH Remorin family protein 14238 Remorin family protein locus:1005716754; AT1G69325 Remorin C-terminal region NA NA NA NA NA NA NA ENOG411EGJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGJ7 MXK3.29 Q9LV75 Q9LV75_ARATH Gb|AAF17687.1 (Senescence-associated family protein (DUF581)) (Uncharacterized protein At5g65040) 13072 Gb|AAF17687.1 (Senescence-associated family protein (DUF581)) (Uncharacterized protein At5g65040) locus:2177739; AT5G65040 Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411EGJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA membrane-anchored ubiquitin-fold protein 3-like NA NA NA NA NA NA NA ENOG411EGJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Centromere/kinetochore Zw10 NA NA NA NA NA NA NA ENOG411EE6M TFIIB1,TFIIB2 P48512,Q9SS44 TF2B1_ARATH,TF2B2_ARATH Transcription initiation factor IIB-1 (General transcription factor TFIIB-1) (AtTFIIB1),Transcription initiation factor IIB-2 (General transcription factor TFIIB-2) (AtTFIIB2) DISRUPTION PHENOTYPE: Embryonic lethality and aborted seed when homozygous. {ECO:0000269|PubMed:23547107}. FUNCTION: General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). Interacts with TBP2 and is required for activated transcription and possibly basal transcription (PubMed:10634912). Plays important roles in pollen tube growth, guidance, and reception as well as endosperm development. Is partially functionally different from TFIIB2 and PBRP2 (PubMed:23547107). {ECO:0000250|UniProtKB:Q8W0W3, ECO:0000269|PubMed:10634912, ECO:0000269|PubMed:23547107}.,FUNCTION: General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II. {ECO:0000250|UniProtKB:Q8W0W3}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 34272,34222 Transcription initiation factor IIB-1 (General transcription factor TFIIB-1) (AtTFIIB1),Transcription initiation factor IIB-2 (General transcription factor TFIIB-2) (AtTFIIB2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; TBP-class protein binding [GO:0017025]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; endosperm development [GO:0009960]; pollen tube guidance [GO:0010183]; regulation of pollen tube growth [GO:0080092]; regulation of transcription, DNA-templated [GO:0006355],cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; TBP-class protein binding [GO:0017025]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; regulation of transcription, DNA-templated [GO:0006355] locus:2062703;,locus:2076259; AT2G41630,AT3G10330 TFIIB zinc-binding Os09g0534800 protein (Fragment) A0A0P0XPL6 A0A0P0XPL6_ORYSJ Os09g0534800 OSNPB_090534800 ENOG411EE6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain NA NA NA NA NA NA NA ENOG411EE6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mate efflux family protein NA NA NA NA NA NA NA ENOG411EE6F A0A1P8B1C2,F4IS02,A0A1P8B1D9,A0A1P8B1H2 A0A1P8B1C2_ARATH,F4IS02_ARATH,A0A1P8B1D9_ARATH,A0A1P8B1H2_ARATH Uncharacterized protein 35089,34408,24560,24433 Uncharacterized protein locus:2042912; AT2G38160 Inherit from KOG: lactosylceramide NA NA NA NA NA NA NA ENOG411EE6A MAKR3 Q9ZUS8 MAKR3_ARATH Probable membrane-associated kinase regulator 3 34974 Probable membrane-associated kinase regulator 3 plasma membrane [GO:0005886] locus:2049832; AT2G37380 NA NA NA NA NA NA NA NA ENOG411EE6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA shikimate dehydrogenase NA NA NA NA NA NA NA ENOG411EE6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L1p/L10e family NA NA NA NA NA NA NA ENOG411EE6X Q5Q0H3,Q9SAE0 Q5Q0H3_ARATH,Q9SAE0_ARATH Proline-rich receptor-like kinase,F3F19.7 (Proline-rich receptor-like kinase) 20674,35809 Proline-rich receptor-like kinase,F3F19.7 (Proline-rich receptor-like kinase) integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2031840; AT1G13050 NA NA NA NA NA NA NA NA ENOG411EE6Y BCAT7,BCAT6 Q9LPM8,Q9LPM9,A0A1P8AMV4 BCAT7_ARATH,BCAT6_ARATH,A0A1P8AMV4_ARATH Putative branched-chain-amino-acid aminotransferase 7 (Atbcat-7),Branched-chain-amino-acid aminotransferase 6 (Atbcat-6) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) FUNCTION: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine (By similarity). {ECO:0000250}. PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 4/4.; PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 4/4.; PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 4/4. ARA:AT1G50090-MONOMER;,ARA:AT1G50110-MONOMER; R-ATH-70895; 2.6.1.42 39999,38861,34931 Putative branched-chain-amino-acid aminotransferase 7 (Atbcat-7),Branched-chain-amino-acid aminotransferase 6 (Atbcat-6) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) branched-chain-amino-acid transaminase activity [GO:0004084]; branched-chain amino acid metabolic process [GO:0009081],cytosol [GO:0005829]; L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; methionine-oxo-acid transaminase activity [GO:0010326]; glucosinolate biosynthetic process from homomethionine [GO:0033506]; isoleucine biosynthetic process [GO:0009097]; L-methionine salvage [GO:0071267]; leucine biosynthetic process [GO:0009098]; valine biosynthetic process [GO:0009099],L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; branched-chain amino acid biosynthetic process [GO:0009082] locus:2031040;,locus:2031030; AT1G50090,AT1G50110 branched-chain amino acid aminotransferase 6 NA NA NA NA NA NA NA ENOG411EE6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE6U TMK3 Q9SIT1 TMK3_ARATH Receptor-like kinase TMK3 (EC 2.7.11.1) (BARK1-like kinase 2) (Leucine-rich repeat receptor-like kinases TMK3) (Transmembrane kinase 3) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:23613767). Tmk1 and tmk3 double mutants, tmk2 and tmk3 double mutants, tmk3 and tmk4 double mutants, tmk1, tmk2 and tmk3 triple mutants and tmk2, tmk3 and tmk4 triple mutants have no visible phenotypes (PubMed:23613767). Tmk1, tmk3 and tmk4 triple mutants have a severe reduction in organ size, a substantial delay in growth and development, and a decrease in fertility (PubMed:23613767). Tmk1, tmk2, tmk3 and tmk4 quadruple mutants are embryo lethal (PubMed:23613767, PubMed:24578577). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:24578577}. FUNCTION: Involved in auxin signal transduction and cell expansion and proliferation regulation (PubMed:23613767). {ECO:0000269|PubMed:23613767}. 2.7.11.1 101959 Receptor-like kinase TMK3 (EC 2.7.11.1) (BARK1-like kinase 2) (Leucine-rich repeat receptor-like kinases TMK3) (Transmembrane kinase 3) integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; pollen development [GO:0009555]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers. {ECO:0000269|PubMed:23613767}. locus:2059703; AT2G01820 Leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EE6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EE6W Q9LXB0,A0A1P8BAB6,F4KI75 Q9LXB0_ARATH,A0A1P8BAB6_ARATH,F4KI75_ARATH AT5g10580/F12B17_70 (Uncharacterized protein F12B17_70),Uncharacterized protein 27633,28154,21687 AT5g10580/F12B17_70 (Uncharacterized protein F12B17_70),Uncharacterized protein integral component of membrane [GO:0016021] locus:2142549; AT5G10580 Protein of unknown function DUF599 NA NA NA NA NA NA NA ENOG411EE6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EE6R NAC60,NAC089,NAC060 Q9LXL9,Q94F58,A0A1P8BAF4,A0A1I9LQ81 NAC60_ARATH,NAC89_ARATH,A0A1P8BAF4_ARATH,A0A1I9LQ81_ARATH NAC domain-containing protein 60 (ANAC060) (Protein NTM1-like 5),NAC domain-containing protein 89 (ANAC089) (Protein FRUCTOSE-SENSING QUANTITATIVE TRAIT LOCUS 6),NAC domain containing protein 89,NAC domain containing protein 60 FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.,FUNCTION: Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. 38063,38046,26730,26002 NAC domain-containing protein 60 (ANAC060) (Protein NTM1-like 5),NAC domain-containing protein 89 (ANAC089) (Protein FRUCTOSE-SENSING QUANTITATIVE TRAIT LOCUS 6),NAC domain containing protein 89,NAC domain containing protein 60 integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to glucose stimulus [GO:0071333]; transcription, DNA-templated [GO:0006351],endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of flower development [GO:0009910]; plant-type hypersensitive response [GO:0009626]; positive regulation of transcription, DNA-templated [GO:0045893]; response to endoplasmic reticulum stress [GO:0034976]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. locus:2095730;,locus:2176362; AT3G44290,AT5G22290 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EE6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc OSJNBa0016N04.17 protein (OSJNBb0042I07.5 protein) (Os04g0369300 protein),Os04g0372100 protein,Os04g0367600 protein Q7X895,A0A0P0W929,A0A0P0W9G8 Q7X895_ORYSJ,A0A0P0W929_ORYSJ,A0A0P0W9G8_ORYSJ Os04g0369300 OsJ_14453 OSJNBa0016N04.17 OSJNBb0042I07.5 OSNPB_040369300,Os04g0372100 OSNPB_040372100,Os04g0367600 OSNPB_040367600 ENOG411EE68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411EE69 DREB1E Q9SGJ6 DRE1E_ARATH Dehydration-responsive element-binding protein 1E (Protein DREB1E) FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. 20649 Dehydration-responsive element-binding protein 1E (Protein DREB1E) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell growth [GO:0016049]; regulation of gibberellin biosynthetic process [GO:0010371]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351] locus:2015168; AT1G63030 AP2 NA NA NA NA NA NA NA ENOG411EE64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) NA NA NA NA NA NA NA ENOG411EE65 HAT2,HAT1 P46601,P46600 HAT2_ARATH,HAT1_ARATH Homeobox-leucine zipper protein HAT2 (Homeodomain-leucine zipper protein HAT2) (HD-ZIP protein 2),Homeobox-leucine zipper protein HAT1 (Homeodomain-leucine zipper protein HAT1) (HD-ZIP protein 1) FUNCTION: Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.,FUNCTION: Probable transcription factor. {ECO:0000250}. 31727,31555 Homeobox-leucine zipper protein HAT2 (Homeodomain-leucine zipper protein HAT2) (HD-ZIP protein 2),Homeobox-leucine zipper protein HAT1 (Homeodomain-leucine zipper protein HAT1) (HD-ZIP protein 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; negative regulation of transcription, DNA-templated [GO:0045892]; response to auxin [GO:0009733]; shade avoidance [GO:0009641]; transcription, DNA-templated [GO:0006351]; unidimensional cell growth [GO:0009826],nucleus [GO:0005634]; protein self-association [GO:0043621]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; developmental process involved in reproduction [GO:0003006]; floral meristem determinacy [GO:0010582]; fruit septum development [GO:0080127]; gynoecium development [GO:0048467]; transcription, DNA-templated [GO:0006351] locus:2171489;,locus:2129061; AT5G47370,AT4G17460 HD-ZIP protein N terminus NA NA NA NA NA NA NA ENOG411EE66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EE67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 16 Os04g0631200 protein (cDNA clone:001-025-C07, full insert sequence) B7E3J2 B7E3J2_ORYSJ Os04g0631200 OSNPB_040631200 ENOG411EE60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EE62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-III NA NA NA NA NA NA NA ENOG411EE63 F4HU33,Q9LMM4 F4HU33_ARATH,Q9LMM4_ARATH Glycosyltransferase (Transferring glycosyl group transferase (DUF604)),F22L4.11 protein (Transferring glycosyl group transferase (DUF604)) 55080,58780 Glycosyltransferase (Transferring glycosyl group transferase (DUF604)),F22L4.11 protein (Transferring glycosyl group transferase (DUF604)) endoplasmic reticulum [GO:0005783]; transferase activity [GO:0016740],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2025416; AT1G01570 Protein of unknown function DUF604 NA NA NA NA NA NA NA ENOG411E4WZ Q6NLB6 Q6NLB6_ARATH At4g13220 (Transmembrane protein) 19187 At4g13220 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2119300; AT4G13220 NA Expressed protein (Os12g0276100 protein) (cDNA clone:001-108-G10, full insert sequence) Q2QU14 Q2QU14_ORYSJ LOC_Os12g17830 Os12g0276100 OSNPB_120276100 ENOG411E4WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os07g0105000 protein A0A0P0X1L5 A0A0P0X1L5_ORYSJ Os07g0105000 OSNPB_070105000 ENOG411E4WY O49317 O49317_ARATH Uncharacterized protein At2g33180 18364 Uncharacterized protein At2g33180 chloroplast stroma [GO:0009570] locus:2046510; AT2G33180 NA Os09g0481800 protein (cDNA clone:001-105-G02, full insert sequence) Q69QQ8 Q69QQ8_ORYSJ Os09g0481800 Os09g0481800 OSNPB_090481800 P0463D04.30 ENOG411E4WR A0JQ00,F4KDS7 A0JQ00_ARATH,F4KDS7_ARATH At5g02740 (Ribosomal protein S24e family protein),Ribosomal protein S24e family protein 25224,20319 At5g02740 (Ribosomal protein S24e family protein),Ribosomal protein S24e family protein ribosome [GO:0005840]; nucleic acid binding [GO:0003676],ribosome [GO:0005840] locus:2151226; AT5G02740 NA Expressed protein (Os03g0282900 protein) (cDNA clone:006-209-A08, full insert sequence) (cDNA clone:006-303-B01, full insert sequence) (cDNA clone:J033086G07, full insert sequence) Q8H8U7 Q8H8U7_ORYSJ Os03g0282900 LOC_Os03g17450 Os03g0282900 OsJ_10385 OSNPB_030282900 ENOG411E4WS Q9LRX9 Q9LRX9_ARATH At3g24820 (BSD domain-containing protein) 21317 At3g24820 (BSD domain-containing protein) locus:2087258; AT3G24820 BSD domain-containing protein Os04g0662000 protein A0A0P0WFX6 A0A0P0WFX6_ORYSJ Os04g0662000 OSNPB_040662000 ENOG411E4WP Q8GWL2 LOR7_ARATH Protein LURP-one-related 7 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 20207 Protein LURP-one-related 7 plasma membrane [GO:0005886] locus:2065753; AT2G30270 LURP-one-related 7-like NA NA NA NA NA NA NA ENOG411E4WQ MLE2.9 Q6IDA6,F4KAP9,F4KAQ0,F4KAQ2 Q6IDA6_ARATH,F4KAP9_ARATH,F4KAQ0_ARATH,F4KAQ2_ARATH At5g63460 (SAP domain-containing protein) (Uncharacterized protein At5g63460),SAP domain-containing protein 17553,10706,17423,18907 At5g63460 (SAP domain-containing protein) (Uncharacterized protein At5g63460),SAP domain-containing protein locus:2167381; AT5G63460 Det1 complexing ubiquitin ligase Os12g0442900 protein (SAP domain containing protein, expressed) (cDNA clone:J033066K13, full insert sequence),Os11g0483600 protein (SAP domain containing protein, expressed) (cDNA clone:J033142D19, full insert sequence) Q2QS19,Q2R486 Q2QS19_ORYSJ,Q2R486_ORYSJ LOC_Os12g25640 Os12g0442900 OSNPB_120442900,Os11g0483600 LOC_Os11g29340 Os11g0483600 OsJ_33902 OSNPB_110483600 ENOG411E4WV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI NA NA NA NA NA NA NA ENOG411E4WW DREB2D Q9LQZ2 DRE2D_ARATH Dehydration-responsive element-binding protein 2D (Protein DREB2D) FUNCTION: Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. 22580 Dehydration-responsive element-binding protein 2D (Protein DREB2D) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; positive regulation of transcription, DNA-templated [GO:0045893]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2005704; AT1G75490 dehydration-responsive element-binding protein NA NA NA NA NA NA NA ENOG411E4WT FPF1,FLP2 O23624,Q9LXB5,A0A1P8BBM5,A0A1P8BBN7 FPF1_ARATH,FLP2_ARATH,A0A1P8BBM5_ARATH,A0A1P8BBN7_ARATH Flowering-promoting factor 1 (AtFPF1),Flowering-promoting factor 1-like protein 2 (FPF1-like protein 2),Flowering promoting factor 1 FUNCTION: Modulates the competence to flowering of apical meristems. Involved in a GA-dependent response in apical meristems during the transition to flowering. {ECO:0000269|PubMed:10406123, ECO:0000269|PubMed:9286110, ECO:0000269|Ref.6}.,FUNCTION: Modulates the competence to flowering of apical meristems. {ECO:0000269|Ref.5}. MISCELLANEOUS: Overexpression of FPF1 results in shortening of the time to flowering.,MISCELLANEOUS: Overexpression of FLP2 results in shortening of the time to flowering. 12722,12792,20285,17095 Flowering-promoting factor 1 (AtFPF1),Flowering-promoting factor 1-like protein 2 (FPF1-like protein 2),Flowering promoting factor 1 positive regulation of flower development [GO:0009911]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: After the photoperiodic induction of flowering and in early transition stages, expression is only detectable in the peripheral zone of apical meristems. Later on, it can also be found in floral meristems and in axillary meristems that form secondary inflorescences. {ECO:0000269|PubMed:9286110}. TISSUE SPECIFICITY: Expressed in leaves and in some parts of the flowers, mainly in the sepals. {ECO:0000269|Ref.5}. locus:2149368;,locus:1006230424; AT5G24860,AT5G10625 Inherit from euNOG: flp1 flp1 (fpf1-like protein 1) NA NA NA NA NA NA NA ENOG411E4WJ ERF105 Q8VY90 EF105_ARATH Ethylene-responsive transcription factor ERF105 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 24577 Ethylene-responsive transcription factor ERF105 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2176187; AT5G51190 ethylene-responsive transcription factor 5-like NA NA NA NA NA NA NA ENOG411E4WK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os07g0625800 protein (cDNA clone:J033060N23, full insert sequence) (cDNA clone:J033128J19, full insert sequence),Os02g0286350 protein (Fragment) Q7XIG9,A0A0N7KF40 Q7XIG9_ORYSJ,A0A0N7KF40_ORYSJ OJ1339_F05.116 Os07g0625800 OSNPB_070625800,Os02g0286350 OSNPB_020286350 ENOG411E4WH HEC3,IND Q9LXD8,O81313 HEC3_ARATH,IND_ARATH Transcription factor HEC3 (Basic helix-loop-helix protein 43) (AtbHLH43) (bHLH 43) (Protein HECATE 3) (Transcription factor EN 119) (bHLH transcription factor bHLH043),Transcription factor IND (Basic helix-loop-helix protein 40) (AtbHLH40) (bHLH 40) (Protein INDEHISCENT) (Transcription factor EN 120) (bHLH transcription factor bHLH040) DISRUPTION PHENOTYPE: Impaired pollen tube growth. {ECO:0000269|PubMed:17855426}. Compared with wild type stigmas were smaller and more variable in size in hec1 hec3 mutants. There was also a slight tendency for the style to be somewhat longer in the double mutant.,Double mutant had a sizable reduction in overall fertility (17% wild-type seed set) along with significant variations in individual fruit size and seed yield. Seed distribution was biased toward the apical half of the carpel but substantial fertilization also occurred in the basal half.,Mutant carpels showed significantly fewer pollen tubes and pollination events particularly in the basal half of the gynoecium.,The double mutant however had dramatically reduced Alcian Blue staining in both the style and the septum compared with wild type. In analyzing pre-fertilization stages of development the transmitting tract of the hec1 hec3 double mutant had no delay in onset of ECM production but produced less ECM than wild type.,Mutant plants had smaller fruit and a modest reduction in fertility compared with wild type (59% of wild-type seed set). Reciprocal crosses revealed the fertility defect to be female-specific.,The hec3 transmitting tract was smaller in size than wild type in both the septum and the style but had the same general appearance as wild type. Slightly reduced fertility-M. Yanofsky-2007 FUNCTION: Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.,FUNCTION: Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker. {ECO:0000269|PubMed:15035986}. 25400,22949 Transcription factor HEC3 (Basic helix-loop-helix protein 43) (AtbHLH43) (bHLH 43) (Protein HECATE 3) (Transcription factor EN 119) (bHLH transcription factor bHLH043),Transcription factor IND (Basic helix-loop-helix protein 40) (AtbHLH40) (bHLH 40) (Protein INDEHISCENT) (Transcription factor EN 120) (bHLH transcription factor bHLH040) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel formation [GO:0048462]; gynoecium development [GO:0048467]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; transmitting tissue development [GO:0010500],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; polar nucleus fusion [GO:0010197]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. TISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.,TISSUE SPECIFICITY: After fertilization, it is expressed in stripes about four cells wide at the margins of developing wild-type fruit. Also expressed in the inner valve layer, which becomes lignified later in fruit development. Detected in roots. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15035986}. locus:2144791;,locus:2126856; AT5G09750,AT4G00120 sequence-specific DNA binding transcription factor activity Os08g0108500 protein C7J662 C7J662_ORYSJ Os08g0108500 Os08g0108500 OSNPB_080108500 ENOG411E4WN GA3OX4 Q9C971 G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 (EC 1.14.11.15) (GA 3-oxidase 4) (AtGA3ox3) (AtGA3ox4) (Gibberellin 3 beta-hydroxylase 4) DISRUPTION PHENOTYPE: No visible phenotype, but abnormal formation of the seed coat. {ECO:0000269|PubMed:15927942}. No remarkable phenotype in its germination and vegetative growth. Delayed starch degradation in the outer seed integument but no difference in the embryo. Starches of columnar shape disappear sooner than smaller granules in the inner layer of the outer integument. Shape of hexagonal epidermal cells is severely distorted. Thinner and more heterogeneous distribution of mucilage at periphery of seeds. These phenotypes could be complemented by exogenous application of gibberellin GA4.,Dwarf phenotype early flowers are sterile while late flowers are fertile. Reduced silique length. FUNCTION: Converts the inactive gibbberellin (GA) precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1. Involved in the production of bioactive GA for reproductive development. {ECO:0000269|PubMed:16460513}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT1G80330-MONOMER;MetaCyc:AT1G80330-MONOMER; 1.14.11.15; 1.14.11.15 39153 Gibberellin 3-beta-dioxygenase 4 (EC 1.14.11.15) (GA 3-oxidase 4) (AtGA3ox3) (AtGA3ox4) (Gibberellin 3 beta-hydroxylase 4) gibberellin 3-beta-dioxygenase activity [GO:0016707]; metal ion binding [GO:0046872]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to light stimulus [GO:0009416] DEVELOPMENTAL STAGE: Expressed in developing siliques 3-13 days after pollination. {ECO:0000269|PubMed:15927942}. TISSUE SPECIFICITY: Expressed in siliques and in seeds, specifically at the rim of the embryo and the outer integument. Also expressed in flowers. Not detected in roots, stems and leaves. {ECO:0000269|PubMed:15927942, ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:17277098}. locus:2034195; AT1G80330 gibberellin 3-oxidase 4 NA NA NA NA NA NA NA ENOG411E4WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0582600 protein (cDNA clone:006-204-E03, full insert sequence) (cDNA clone:J033092A09, full insert sequence) Q6EPT4 Q6EPT4_ORYSJ Os02g0582600 OSJNBa0016D04.17 OSNPB_020582600 ENOG411E4WB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0230000 protein (cDNA clone:J013096C05, full insert sequence) Q6Z1S0 Q6Z1S0_ORYSJ Os08g0230000 OSJNBa0038P10.26 OSNPB_080230000 ENOG411E4WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0717200 protein (Fragment) A0A0P0VNY7 A0A0P0VNY7_ORYSJ Os02g0717200 OSNPB_020717200 ENOG411E4WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0549800 protein (RNA recognition motif (RRM)-containing protein-like) (cDNA clone:J023026P08, full insert sequence) Q84ZB9 Q84ZB9_ORYSJ P0534A03.127 Os07g0549800 OsJ_24665 OSNPB_070549800 ENOG411E4WF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0554200 protein (cDNA clone:002-142-C10, full insert sequence) Q0IZR5 Q0IZR5_ORYSJ Os09g0554200 Os09g0554200 OSNPB_090554200 ENOG411E4WG GRXS10 Q9LIF1 GRS10_ARATH Monothiol glutaredoxin-S10 (AtGrxS10) (Protein ROXY 3) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 11056 Monothiol glutaredoxin-S10 (AtGrxS10) (Protein ROXY 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2089468; AT3G21460 monothiol glutaredoxin-S10-like NA NA NA NA NA NA NA ENOG411E4WD MBD10 Q9XI36 MBD10_ARATH Methyl-CpG-binding domain-containing protein 10 (AtMBD10) (MBD10) (Methyl-CpG-binding protein MBD10) DISRUPTION PHENOTYPE: Impaired nucleolar dominance. {ECO:0000269|PubMed:19061642}. FUNCTION: Probable transcriptional regulator (By similarity). Required for nucleolar dominance that consist in the silencing of rRNA genes inherited from one progenitor in genetic hybrids. {ECO:0000250, ECO:0000269|PubMed:19061642}. 42358 Methyl-CpG-binding domain-containing protein 10 (AtMBD10) (MBD10) (Methyl-CpG-binding protein MBD10) cytosol [GO:0005829]; nucleus [GO:0005634]; methyl-CpG binding [GO:0008327]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, buds, flowers, stems and siliques. {ECO:0000269|PubMed:12954765}. locus:2037863; AT1G15340 Methyl-CpG binding domain NA NA NA NA NA NA NA ENOG411E4WE F1I16_230 Q9M043 Q9M043_ARATH At3g55820 (Fasciclin-like arabinogalactan family protein) (Uncharacterized protein F1I16_230) 22850 At3g55820 (Fasciclin-like arabinogalactan family protein) (Uncharacterized protein F1I16_230) integral component of membrane [GO:0016021] locus:2078971; AT3G55820 NA Os03g0237950 protein (Fragment) A0A0N7KGW7 A0A0N7KGW7_ORYSJ Os03g0237950 OSNPB_030237950 ENOG411E4W8 PTAC7 Q8VZV9 PTA7_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 (pTAC7) (Protein PIGMENT DEFECTIVE 225) DISRUPTION PHENOTYPE: Albino plants with defective chloroplasts containing a few appressed membranes but lacking thylakoids, even when grown under normal light conditions. Reduced plastid-encoded RNA polymerase (PEP) activity. {ECO:0000269|PubMed:23082802}. Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: Essential for chloroplast development, especially for thylakoid formation. Involved in plastid gene expression, probably by maintaining plastid-encoded RNA polymerase (PEP) activity. {ECO:0000269|PubMed:23082802}. 18732 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 (pTAC7) (Protein PIGMENT DEFECTIVE 225) chloroplast [GO:0009507]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; plastid-encoded plastid RNA polymerase complex [GO:0000427]; chloroplast organization [GO:0009658]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416]; thylakoid membrane organization [GO:0010027]; transcription from plastid promoter [GO:0042793] TISSUE SPECIFICITY: Mostly expressed in leaves, flowers and seedlings, and, to a lower extent, in roots and stems. {ECO:0000269|PubMed:23082802}. locus:504954893; AT5G24314 NA Os01g0705300 protein,Os01g0705300 protein (Fragment) Q94JF1,A0A0N7KDL2 Q94JF1_ORYSJ,A0A0N7KDL2_ORYSJ P0684B02.24-1 P0692C11.5-1 Os01g0705300 OSNPB_010705300,Os01g0705300 OSNPB_010705300 ENOG411E4W9 LSM6A,LSM6B Q9M1Z3,O22823 LSM6A_ARATH,LSM6B_ARATH Sm-like protein LSM6A (AtLSM6A) (U6 snRNA-associated Sm-like protein LSM6A),Sm-like protein LSM36B (AtLSM6B) (U6 snRNA-associated Sm-like protein LSM6B) FUNCTION: Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-430039;R-ATH-72163; 9913,9728 Sm-like protein LSM6A (AtLSM6A) (U6 snRNA-associated Sm-like protein LSM6A),Sm-like protein LSM36B (AtLSM6B) (U6 snRNA-associated Sm-like protein LSM6B) nucleolus [GO:0005730]; P-body [GO:0000932]; small nucleolar ribonucleoprotein complex [GO:0005732]; spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688]; RNA binding [GO:0003723]; maturation of SSU-rRNA [GO:0030490]; mRNA splicing, via spliceosome [GO:0000398] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2080487;,locus:2043969; AT3G59810,AT2G43810 U6 snRNA-associated Sm-like protein Os02g0510100 protein (Putative Sm protein F) (cDNA clone:001-016-D10, full insert sequence),Os02g0510100 protein (Fragment),Os04g0388900 protein (cDNA clone:001-112-E09, full insert sequence) Q6K2E9,Q0E0Z4,Q0JDN9 Q6K2E9_ORYSJ,Q0E0Z4_ORYSJ,Q0JDN9_ORYSJ Os02g0510100 OsJ_06869 OSJNBa0052M16.37 OSNPB_020510100,Os02g0510100 Os02g0510100 OSNPB_020510100,Os04g0388900 Os04g0388900 OsJ_14579 OSNPB_040388900 ENOG411E4W2 Q8VZW5 Q8VZW5_ARATH Dynein light chain type 1 family protein (Uncharacterized protein At4g27360) 11202 Dynein light chain type 1 family protein (Uncharacterized protein At4g27360) cytoplasmic dynein complex [GO:0005868]; cytoskeletal protein binding [GO:0008092]; dynein intermediate chain binding [GO:0045505]; dynein light intermediate chain binding [GO:0051959]; cilium assembly [GO:0060271]; positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [GO:2000582]; transport along microtubule [GO:0010970] locus:2131764; AT4G27360 dynein light chain NA NA NA NA NA NA NA ENOG411E4W3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E4W0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein No apical meristem protein, expressed (Os11g0512000 protein) (cDNA clone:002-127-B02, full insert sequence),NAM protein (No apical meristem protein) (Os11g0512100 protein) (cDNA, clone: J075106F03, full insert sequence),Os11g0512600 protein (Fragment),Os11g0512200 protein,Os11g0512400 protein Q2R3N5,Q2R3N4,A0A0N7KSZ2,A0A0P0Y2K3,A0A0P0Y2K4 Q2R3N5_ORYSJ,Q2R3N4_ORYSJ,A0A0N7KSZ2_ORYSJ,A0A0P0Y2K3_ORYSJ,A0A0P0Y2K4_ORYSJ Os11g0512000 LOC_Os11g31330 Os11g0512000 OsJ_34013 OSNPB_110512000,Os11g0512100 LOC_Os11g31340 OsJ_34014 OSNPB_110512100,Os11g0512600 OSNPB_110512600,Os11g0512200 OSNPB_110512200,Os11g0512400 OSNPB_110512400 ENOG411E4W1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA squamosa Squamosa promoter-binding-like protein 13 Q6Z461 SPL13_ORYSJ SPL13 Os07g0505200 LOC_Os07g32170 P0430F03.47 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411E4W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411E4W7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Guanine nucleotide-binding protein subunit gamma 2 (Ggamma-subunit 2) (Heterotrimeric G protein gamma-subunit 2),Os02g0137800 protein (cDNA clone:J033054L18, full insert sequence) Q6YXX9,B7ES13 GG2_ORYSJ,B7ES13_ORYSJ RGG2 Os02g0137800 LOC_Os02g04520 OSJNBa0026E05.11-1,Os02g0137800 OSNPB_020137800 FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. {ECO:0000305}. ENOG411E4W4 MBS1,MQK4.20 Q9M8S0,Q9FFD8 Q9M8S0_ARATH,Q9FFD8_ARATH AT3g02790/F13E7_27 (F13E7.27 protein) (Zinc finger (C2H2 type) family protein),At5g16470 (Gb|AAF26981.1) (Uncharacterized protein At5g16470) (Zinc finger (C2H2 type) family protein) 11278,11239 AT3g02790/F13E7_27 (F13E7.27 protein) (Zinc finger (C2H2 type) family protein),At5g16470 (Gb|AAF26981.1) (Uncharacterized protein At5g16470) (Zinc finger (C2H2 type) family protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to singlet oxygen [GO:0071452]; regulation of transcription, DNA-templated [GO:0006355],transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to singlet oxygen [GO:0071452]; regulation of transcription, DNA-templated [GO:0006355] locus:2075397;,locus:2171422; AT3G02790,AT5G16470 zinc finger Os06g0708600 protein (Zinc finger protein-like) (cDNA clone:J023133D21, full insert sequence) Q5Z9H7 Q5Z9H7_ORYSJ Os06g0708600 OSNPB_060708600 P0621D05.46 P0655A07.6 ENOG411E4W5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os02g0308800 protein (Putative fasciclin-like arabinogalactan-protein) (cDNA clone:001-035-E01, full insert sequence) (cDNA clone:006-201-D11, full insert sequence) (cDNA clone:006-304-D08, full insert sequence) Q6Z0V9 Q6Z0V9_ORYSJ Os02g0308800 OSJNBb0026D20.23 OSNPB_020308800 ENOG411EIX5 Q9LRJ5,Q9C9I4,B3H5G6 Q9LRJ5_ARATH,Q9C9I4_ARATH,B3H5G6_ARATH Uncharacterized protein,Uncharacterized protein F26A9.15 14669,15029,14729 Uncharacterized protein,Uncharacterized protein F26A9.15 locus:2095597;,locus:2825309; AT3G22090,AT1G71470 NA NA NA NA NA NA NA NA ENOG411EM2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle Os03g0836200 protein (Putative RNA binding protein) (RNA recognition motif family protein, expressed) (cDNA clone:001-015-G03, full insert sequence) (cDNA clone:J013095N17, full insert sequence) (cDNA clone:J033031E20, full insert sequence) Q75LJ7 Q75LJ7_ORYSJ Os03g0836200 LOC_Os03g61990 Os03g0836200 OsJ_13272 OSJNBa0096I06.8 OSNPB_030836200 ENOG411EM2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os02g0252100 protein (Putative pre-mRNA splicing factor) (cDNA clone:J013151F04, full insert sequence),Os11g0704700 protein (Fragment) Q6K542,A0A0P0Y5P0 Q6K542_ORYSJ,A0A0P0Y5P0_ORYSJ Os02g0252100 Os02g0252100 OJ1113_G05.32 OSJNBa0009N02.7 OSNPB_020252100,Os11g0704700 OSNPB_110704700 ENOG411EM2S UBP1A,UBP1C Q9SYG4,Q9LJH8,F4HV67 UBP1A_ARATH,UBP1C_ARATH,F4HV67_ARATH Oligouridylate-binding protein 1A (AtUBP1a) (Polyuridylate-binding protein UBP1A) (Poly(U)-binding protein UBP1A),Oligouridylate-binding protein 1C (AtUBP1c) (Polyuridylate-binding protein UBP1C) (Poly(U)-binding protein UBP1C),Oligouridylate-binding protein 1A FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. Functions to facilitate the nuclear maturation of plant pre-mRNAs (By similarity). {ECO:0000250}.,FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. Functions at multiple steps to facilitate the nuclear maturation of plant pre-mRNAs (By similarity). {ECO:0000250}. 47234,47089,47804 Oligouridylate-binding protein 1A (AtUBP1a) (Polyuridylate-binding protein UBP1A) (Poly(U)-binding protein UBP1A),Oligouridylate-binding protein 1C (AtUBP1c) (Polyuridylate-binding protein UBP1C) (Poly(U)-binding protein UBP1C),Oligouridylate-binding protein 1A nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397],nucleus [GO:0005634]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397],plasma membrane [GO:0005886]; mRNA binding [GO:0003729] locus:2087457;,locus:2014340; AT1G54080,AT3G14100 Oligouridylate-binding protein NA NA NA NA NA NA NA ENOG411EM2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31 kDa ribonucleoprotein chloroplastic-like NA NA NA NA NA NA NA ENOG411ECA2 WAKL9,WAKL10 Q9C9L5,Q8VYA3 WAKLH_ARATH,WAKLJ_ARATH Wall-associated receptor kinase-like 9 (EC 2.7.11.-),Wall-associated receptor kinase-like 10 (EC 2.7.11.-) FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. 2.7.11.- 88596,85704 Wall-associated receptor kinase-like 9 (EC 2.7.11.-),Wall-associated receptor kinase-like 10 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; guanylate cyclase activity [GO:0004383]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166]; cGMP biosynthetic process [GO:0006182]; defense response [GO:0006952]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; response to salicylic acid [GO:0009751] locus:2205040;,locus:2019843; AT1G69730,AT1G79680 wall-associated receptor kinase-like NA NA NA NA NA NA NA ENOG411ECA5 PYL3 Q9SSM7 PYL3_ARATH Abscisic acid receptor PYL3 (PYR1-like protein 3) (Regulatory components of ABA receptor 13) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA (PubMed:22579247, PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). {ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:22579247, ECO:0000269|PubMed:23844015}. MISCELLANEOUS: The synthetic growth inhibitor pyrabactin inhibits ABA-binding and subsequent PP2Cs inhibitor properties. {ECO:0000269|PubMed:22579247}. 23291 Abscisic acid receptor PYL3 (PYR1-like protein 3) (Regulatory components of ABA receptor 13) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738] locus:2032738; AT1G73000 Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411ECA4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ECAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411ECAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease Amino acid permease family protein, expressed (Os10g0437100 protein) Q337V1 Q337V1_ORYSJ Os10g0437100 LOC_Os10g30090 Os10g0437100 OsJ_31641 OSNPB_100437100 ENOG411EM29 SCL30A Q9LHP2 SL30A_ARATH Serine/arginine-rich SC35-like splicing factor SCL30A (At-SCL30A) (AtSCL30A) (SC35-like splicing factor 30A) (Serine/arginine-rich splicing factor 30A) DISRUPTION PHENOTYPE: No effect on alternative splicing, due to the redundancy with SCL33. Scl33 and scl30a double mutant shows altered splicing. {ECO:0000269|PubMed:22913769}. FUNCTION: Involved in intron recognition and spliceosome assembly. Binds probably to multiple 5'-GAAG-3' repeats found in its third intron, suggesting autoregulation of alternative splicing (PubMed:22913769). May be necessary for accurate splicing of the 3' region of introns. {ECO:0000269|PubMed:22913769}. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}. 30227 Serine/arginine-rich SC35-like splicing factor SCL30A (At-SCL30A) (AtSCL30A) (SC35-like splicing factor 30A) (Serine/arginine-rich splicing factor 30A) cytosol [GO:0005829]; nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380] locus:2086804; AT3G13570 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E0F4 AGL66,AGL104,AGL67 Q1PFC2,Q9LM46,F4I8L6 AGL66_ARATH,AG104_ARATH,F4I8L6_ARATH Agamous-like MADS-box protein AGL66,Agamous-like MADS-box protein AGL104,AGAMOUS-like 67 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Pollen grains from the double mutant agl66 and agl104 have severly reduced viability, delayed germination and aberrant pollen tube growth. {ECO:0000269|PubMed:19211705}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Pollen grains from the double mutant agl66 and agl104 have severely reduced viability, delayed germination and aberrant pollen tube growth. {ECO:0000269|PubMed:19211705}. Reduced seed set.,Reduced seed set. Pollen tubes are delayed in germination/growth. FUNCTION: Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.,FUNCTION: Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. 38051,38279,29245 Agamous-like MADS-box protein AGL66,Agamous-like MADS-box protein AGL104,AGAMOUS-like 67 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; pollen maturation [GO:0010152]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of pollen tube growth [GO:0080092]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen maturation [GO:0010152]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of pollen tube growth [GO:0080092]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. locus:2029386;,locus:2030621;,locus:2029411; AT1G77980,AT1G22130,AT1G77950 Transcription factor MADS63 protein (Os06g0223300 protein) (Putative MADS-box protein) (cDNA clone:J023075K19, full insert sequence),Os08g0494100 protein (Putative MADS-box protein),Os08g0494100 protein Q67UI9,Q6Z5F8,A0A0P0XHJ8 Q67UI9_ORYSJ,Q6Z5F8_ORYSJ,A0A0P0XHJ8_ORYSJ mads63 Os06g0223300 OsJ_20643 OSNPB_060223300 P0638H11.14,Os08g0494100 B1142B04.1 OSNPB_080494100 P0686H11.33,Os08g0494100 OSNPB_080494100 ENOG411E0F7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain Os07g0642600 protein,Os03g0364700 protein (Fragment),Os06g0315900 protein (Fragment) Q0D472,Q0DRQ1,A0A0P0WW38 Q0D472_ORYSJ,Q0DRQ1_ORYSJ,A0A0P0WW38_ORYSJ Os07g0642600 Os07g0642600 OSNPB_070642600,Os03g0364700 OSNPB_030364700,Os06g0315900 OSNPB_060315900 ENOG411E0F1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-phosphate dependent enzyme Os02g0222100 protein (Fragment) C7IY87 C7IY87_ORYSJ Os02g0222100 Os02g0222100 OSNPB_020222100 ENOG411E0F0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E0F3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E0F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF303) Os04g0110400 protein B9FD23 B9FD23_ORYSJ Os04g0110400 OsJ_13540 OSNPB_040110400 ENOG411E0F9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Class III chitinase (Glycosyl hydrolases family 18 protein, expressed) (Os10g0416500 protein) (cDNA clone:006-201-G07, full insert sequence) (cDNA clone:006-202-C10, full insert sequence) (cDNA clone:006-203-G07, full insert sequence) (cDNA clone:006-304-C04, full insert sequence) Q9FYR9 Q9FYR9_ORYSJ chib1 LOC_Os10g28080 Os10g0416500 OsJ_31525 OSNPB_100416500 ENOG411E0F8 MUL8.22,MUL8.23 Q0WW43,Q8GWM5,A0A1P8BHQ5 Q0WW43_ARATH,Q8GWM5_ARATH,A0A1P8BHQ5_ARATH Uncharacterized protein At5g39520,Uncharacterized protein At5g39530 (Uncharacterized protein At5g39530/MUL8_210),Uncharacterized protein 26439,27756,25965 Uncharacterized protein At5g39520,Uncharacterized protein At5g39530 (Uncharacterized protein At5g39530/MUL8_210),Uncharacterized protein locus:2175658;,locus:2175673; AT5G39520,AT5G39530 Protein of unknown function (DUF1997) Expressed protein (Os03g0168300 protein) (cDNA clone:J023037E14, full insert sequence),Os07g0633000 protein,Os10g0580600 protein (Fragment) Q10R85,A0A0P0X941,A0A0P0XXP3 Q10R85_ORYSJ,A0A0P0X941_ORYSJ,A0A0P0XXP3_ORYSJ LOC_Os03g07200 Os03g0168300 OsJ_09559 OSNPB_030168300,Os07g0633000 OSNPB_070633000,Os10g0580600 OSNPB_100580600 ENOG411E0FU F5K7.26 A0A1P8AZM9,Q8GUT5,A0A1P8AZM8 A0A1P8AZM9_ARATH,Q8GUT5_ARATH,A0A1P8AZM8_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein,Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At2g06025) (Uncharacterized protein F5K7.26) 28388,33608,24675 Acyl-CoA N-acyltransferases (NAT) superfamily protein,Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At2g06025) (Uncharacterized protein F5K7.26) N-acetyltransferase activity [GO:0008080],protein acetyltransferase complex [GO:0031248]; peptide alpha-N-acetyltransferase activity [GO:0004596]; N-terminal protein amino acid acetylation [GO:0006474],transferase activity, transferring acyl groups [GO:0016746] locus:504956007; AT2G06025 FR47-like protein GCN5-related N-acetyltransferase, putative, expressed (Os03g0177000 protein) (cDNA clone:J023092E16, full insert sequence) Q10R02 Q10R02_ORYSJ LOC_Os03g07990 Os03g0177000 OsJ_09628 OSNPB_030177000 ENOG411E0FV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os05g0237800 protein Q60EU1 Q60EU1_ORYSJ Os05g0237800 OJ1122_B08.7 OSNPB_050237800 ENOG411E0FQ MAJ23.70 Q8GUP4,F4KI95,F4KI97 Q8GUP4_ARATH,F4KI95_ARATH,F4KI97_ARATH Centromere protein O (Uncharacterized protein At5g10710),Centromere protein O 36021,27170,34364 Centromere protein O (Uncharacterized protein At5g10710),Centromere protein O kinetochore [GO:0000776]; centromere complex assembly [GO:0034508] locus:2159664; AT5G10710 Pfam:Cenp-O Os04g0284100 protein C7J156 C7J156_ORYSJ Os04g0284100 Os04g0284100 OSNPB_040284100 ENOG411E0FP MQK4.30 Q9FFC9 Q9FFC9_ARATH Voltage-dependent L-type calcium channel subunit 26625 Voltage-dependent L-type calcium channel subunit endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2171417; AT5G16550 NA Os08g0425800 protein A0A0P0XGD0 A0A0P0XGD0_ORYSJ Os08g0425800 OSNPB_080425800 ENOG411E0FR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os02g0641900 protein (Putative P-type R2R3 Myb protein) Q6H7S0 Q6H7S0_ORYSJ OJ1112_G03.9 Os02g0641900 OSNPB_020641900 ENOG411E0FY C0LGV0 Y5487_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g48740 (EC 2.7.11.1) 2.7.11.1 99613 Probable LRR receptor-like serine/threonine-protein kinase At5g48740 (EC 2.7.11.1) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2156549; AT5G48740 LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411E0FX LARP6C,LARP6c Q9LHL3,A0A1I9LLZ1 LRP6C_ARATH,A0A1I9LLZ1_ARATH La-related protein 6C (AtLARP6c),RNA-binding protein FUNCTION: Transcriptional regulator. {ECO:0000250}. 48959,52071 La-related protein 6C (AtLARP6c),RNA-binding protein intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; RNA processing [GO:0006396]; transcription, DNA-templated [GO:0006351],RNA binding [GO:0003723] locus:2089508; AT3G19090 LA Os07g0102500 protein (Putative RNA-binding protein homolog) (cDNA clone:J023079N22, full insert sequence) (cDNA clone:J023121F13, full insert sequence),Os03g0566500 protein (RNA-binding protein, putative, expressed) (cDNA clone:J023057E01, full insert sequence) Q69L83,Q10I29 Q69L83_ORYSJ,Q10I29_ORYSJ Os07g0102500 B1026C12.35 OSNPB_070102500,Os03g0566500 LOC_Os03g36900 Os03g0566500 OsJ_11468 OSNPB_030566500 ENOG411E0FZ CYCD7-1,CYCD7:1 Q9LZM0,A0A1P8BGT0 CCD71_ARATH,A0A1P8BGT0_ARATH Putative cyclin-D7-1 (G1/S-specific cyclin-D7-1) (CycD7;1),CYCLIN D71 39912,36516 Putative cyclin-D7-1 (G1/S-specific cyclin-D7-1) (CycD7;1),CYCLIN D71 nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; regulation of cell cycle [GO:0051726],nucleus [GO:0005634] locus:2185178; AT5G02110 cell division NA NA NA NA NA NA NA ENOG411E0FE MUB3.17 Q1ECK2,Q8LD39 Q1ECK2_ARATH,Q8LD39_ARATH At5g64650 (Ribosomal protein L17 family protein),At5g09770 (Ribosomal protein L17 family protein) (Ribsomal protein-like) 18338,18445 At5g64650 (Ribosomal protein L17 family protein),At5g09770 (Ribosomal protein L17 family protein) (Ribsomal protein-like) large ribosomal subunit [GO:0015934]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2174804;,locus:2144821; AT5G64650,AT5G09770 ribosomal protein Os05g0460700 protein (cDNA clone:J033125I20, full insert sequence),Os01g0839300 protein (Putative 50S ribosomal protein L17) (cDNA clone:002-116-D07, full insert sequence) Q0DHK1,Q5N9V4 Q0DHK1_ORYSJ,Q5N9V4_ORYSJ Os05g0460700 Os05g0460700 OsJ_18817 OSNPB_050460700,Os01g0839300 OsJ_04018 OSNPB_010839300 P0031D11.30 P0408C03.5 ENOG411E0FD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AhpC/TSA family Os03g0729300 protein (UPF0308 protein, chloroplast, putative, expressed) (cDNA clone:002-143-F06, full insert sequence) Q851F5 Q851F5_ORYSJ LOC_Os03g51960 Os03g0729300 OSJNBb0011H13.7 OSNPB_030729300 ENOG411E0FG DTA4 Q9MA02,Q9CA84 Q9MA02_ARATH,Q9CA84_ARATH Downstream target of AGL15-4 (F20B17.19),At1g79760 (Downstream target of AGL15-4) (Uncharacterized protein At1g79760) (Uncharacterized protein F19K16.26) 35989,33671 Downstream target of AGL15-4 (F20B17.19),At1g79760 (Downstream target of AGL15-4) (Uncharacterized protein At1g79760) (Uncharacterized protein F19K16.26) integral component of membrane [GO:0016021] locus:2017839; AT1G79760 NA Os01g0744200 protein Q5JKW0 Q5JKW0_ORYSJ Os01g0744200 OSJNBa0014K08.7 OSNPB_010744200 P0439E07.40 ENOG411E0FA APT5,APT2,APT4 Q9LFP0,Q42563,Q9SU38,A0A1P8B8Z4,A0A1P8B9C5,A0A1P8AN73 APT5_ARATH,APT2_ARATH,APT4_ARATH,A0A1P8B8Z4_ARATH,A0A1P8B9C5_ARATH,A0A1P8AN73_ARATH Adenine phosphoribosyltransferase 5 (AtAPT5) (EC 2.4.2.7),Adenine phosphoribosyltransferase 2 (APRT 2) (AtAPT2) (EC 2.4.2.7),Adenine phosphoribosyltransferase 4 (AtAPT4) (EC 2.4.2.7),Adenine phosphoribosyl transferase 4,Adenine phosphoribosyltransferase 5,Adenine phosphoribosyl transferase 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23658065}. FUNCTION: Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. May contribute to the recycling of adenine into adenylate nucleotides and the inactivation of cytokinins by phosphoribosylation. Possesses low activity toward adenine, but can efficiently convert cytokinins from free bases (active form) to the corresponding nucleotides (inactive form). {ECO:0000269|PubMed:23658065}.,FUNCTION: Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. May contribute to the recycling of adenine into adenylate nucleotides and the inactivation of cytokinins by phosphoribosylation. Possesses low activity toward adenine and cytokinins. {ECO:0000269|PubMed:12010467, ECO:0000269|PubMed:23658065}. PATHWAY: Purine metabolism; AMP biosynthesis via salvage pathway; AMP from adenine: step 1/1. ARA:AT5G11160-MONOMER;,ARA:AT1G80050-MONOMER;,ARA:AT4G12440-MONOMER; R-ATH-6798695;R-ATH-74217; 2.4.2.7; 2.4.2.7 20757,21009,20355,10745,18531,17535 Adenine phosphoribosyltransferase 5 (AtAPT5) (EC 2.4.2.7),Adenine phosphoribosyltransferase 2 (APRT 2) (AtAPT2) (EC 2.4.2.7),Adenine phosphoribosyltransferase 4 (AtAPT4) (EC 2.4.2.7),Adenine phosphoribosyl transferase 4,Adenine phosphoribosyltransferase 5,Adenine phosphoribosyl transferase 2 cytosol [GO:0005829]; adenine phosphoribosyltransferase activity [GO:0003999]; adenine salvage [GO:0006168]; AMP salvage [GO:0044209]; purine ribonucleoside salvage [GO:0006166],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; adenine phosphoribosyltransferase activity [GO:0003999]; phosphate ion transmembrane transporter activity [GO:0015114]; adenine salvage [GO:0006168]; AMP salvage [GO:0044209]; purine ribonucleoside salvage [GO:0006166],transferase activity [GO:0016740]; nucleoside metabolic process [GO:0009116],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; adenine phosphoribosyltransferase activity [GO:0003999]; adenine salvage [GO:0006168]; nucleoside metabolic process [GO:0009116],cytoplasm [GO:0005737]; adenine phosphoribosyltransferase activity [GO:0003999]; adenine salvage [GO:0006168]; nucleoside metabolic process [GO:0009116] locus:2147967;,locus:2016309;,locus:2135550; AT5G11160,AT1G80050,AT4G12440 adenine phosphoribosyltransferase Os02g0613900 protein (Putative adenine phosphoribosyltransferase form 2) (cDNA clone:J023064G04, full insert sequence),Os02g0613900 protein (Putative adenine phosphoribosyltransferase form 2) (cDNA clone:J023024J22, full insert sequence),Os07g0484800 protein (Putative adenine phosphoribosyl transferase) (cDNA clone:002-143-F04, full insert sequence),Os04g0504000 protein Q6K5Y8,Q6K5Y7,Q8H534,A0A0P0WCD3 Q6K5Y8_ORYSJ,Q6K5Y7_ORYSJ,Q8H534_ORYSJ,A0A0P0WCD3_ORYSJ OJ2055_H10.12-1 Os02g0613900 OSNPB_020613900,OJ2055_H10.12-2 Os02g0613900 OSNPB_020613900,OJ1753_E03.106 Os07g0484800 OSNPB_070484800,Os04g0504000 OSNPB_040504000 ENOG411E0FC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0241300 protein (Fragment) A0A0P0VVC3,A0A0P0VVA0 A0A0P0VVC3_ORYSJ,A0A0P0VVA0_ORYSJ Os03g0241300 OSNPB_030241300 ENOG411E0FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7),Os09g0323900 protein Q6K2D3,A0A0N7KQK4 Q6K2D3_ORYSJ,A0A0N7KQK4_ORYSJ prx121 Os09g0323700 OSJNBb0024J13.27 OSNPB_090323700,Os09g0323900 OSNPB_090323900 ENOG411E0FI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Chloroplast nucleoid DNA-binding protein cnd41-like (Os01g0720000 protein) Q8W0E9 Q8W0E9_ORYSJ P0690B02.2 Os01g0720000 OSNPB_010720000 ENOG411E0FH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os06g0145600 protein (Putative anthocyanin 5-aromatic acyltransferase) (cDNA clone:002-100-D11, full insert sequence),Os06g0145200 protein (Putative anthocyanin 5-aromatic acyltransferase) (cDNA clone:002-120-D08, full insert sequence),Os01g0289900 protein,Os06g0145400 protein,Os06g0145300 protein Q5VP55,Q5VP60,A0A0N7KCS7,A0A0P0WSB6,A0A0P0WSX0 Q5VP55_ORYSJ,Q5VP60_ORYSJ,A0A0N7KCS7_ORYSJ,A0A0P0WSB6_ORYSJ,A0A0P0WSX0_ORYSJ Os06g0145600 OSJNBa0007O20.26 OSNPB_060145600 P0036F10.9,Os06g0145200 OSJNBa0007O20.21 OSNPB_060145200 P0036F10.4,Os01g0289900 OSNPB_010289900,Os06g0145400 OSNPB_060145400,Os06g0145300 OSNPB_060145300 ENOG411E0FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules (By similarity) Putative 12-oxophytodienoate reductase 5 (EC 1.3.1.-) (OPDA-reductase 5) (OsOPR5),Putative 12-oxophytodienoate reductase 6 (EC 1.3.1.-) (OPDA-reductase 6) (OsOPR6) Q69TI0,Q69TI2 OPR5_ORYSJ,OPR6_ORYSJ OPR5 OPR-1 OPR6 Os06g0215600 LOC_Os06g11210 OSJNBb0024N18.5 P0537F07.27,OPR6 OPR4 Os06g0215500 OsJ_20590 OSJNBb0024N18.3 P0537F07.25 FUNCTION: Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}. ENOG411E0FJ CYP705A5,''cytochrome P450,CYP705A27 Q9FI39,Q9LPS6,F4I6I6 THAD_ARATH,Q9LPS6_ARATH,F4I6I6_ARATH Cytochrome P450 705A5 (EC 1.14.-.-) (Thalian-diol desaturase) (AtTHAD),Cytochrome P450, family 705, subfamily A, polypeptide 25 (Cytochrome P450, putative) (Putative cytochrome P450),Cytochrome P450, family 705, subfamily A, polypeptide 27 DISRUPTION PHENOTYPE: Increased levels of thalian-diol in roots. {ECO:0000269|PubMed:18356490}. thad1-1 mutants have longer roots and elevated levels of thalianol and thalian-diol in root extracts compared to wild type plants. However these mutants do not seem to have higher susceptibility to Atlernaria brassicicola or Pseudomonas syringae pv. tomato DC3000 based on assays performed on seedling roots. Elevated thalian-diol levels; No other phenotypes mentioned-A. Osbourn-2008 FUNCTION: Converts thalian-diol to a desaturated thalian-diol. {ECO:0000269|PubMed:18356490}. MISCELLANEOUS: Constitutes with three contiguous genes an operon-like gene cluster that is involved in the thalianol pathway. MetaCyc:AT5G47990-MONOMER;,ARA:AT1G50560-MONOMER; 1.14.-.- 58441,58472,60567 Cytochrome P450 705A5 (EC 1.14.-.-) (Thalian-diol desaturase) (AtTHAD),Cytochrome P450, family 705, subfamily A, polypeptide 25 (Cytochrome P450, putative) (Putative cytochrome P450),Cytochrome P450, family 705, subfamily A, polypeptide 27 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; thalian-diol desaturase activity [GO:0080004]; flavonol metabolic process [GO:0051554]; positive gravitropism [GO:0009958]; root development [GO:0048364]; secondary metabolite biosynthetic process [GO:0044550]; thalianol metabolic process [GO:0080003],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] TISSUE SPECIFICITY: Expressed primarily in the root epidermis. {ECO:0000269|PubMed:18356490}. locus:2152768;,locus:2008026;,locus:2008066; AT5G47990,AT1G50560,AT1G50520 cytochrome P450 NA NA NA NA NA NA NA ENOG411E62N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Dof domain, zinc finger family protein, expressed (Os10g0496000 protein) (cDNA clone:002-155-A04, full insert sequence) Q7G2G1 Q7G2G1_ORYSJ Os10g0496000 LOC_Os10g35300 Os10g0496000 OSNPB_100496000 ENOG411E62I PSBW Q39194 PSBW_ARATH Photosystem II reaction center W protein, chloroplastic (PSII 6.1 kDa protein) DISRUPTION PHENOTYPE: Plants have no obvious physical phenotype. However, there is no dimeric photosystem II (PSII) and there is only a 50% rate of normal oxygen evolution. There is an approximately 40% decrease in the amount of PSII and the oxygen evolving complex in these plants. The monomeric PSII that remains functions normally with respect to electron transfer. {ECO:0000269|PubMed:10950961}. Slightly decreased chlorophyll fluorescence; No other phenotypes detected-W. Schroder-2011 FUNCTION: Stabilizes dimeric photosytem II (PSII). In its absence no dimeric PSII accumulates and there is a reduction of monomeric PSII. {ECO:0000269|PubMed:10950961}. MetaCyc:AT2G30570-MONOMER; 13678 Photosystem II reaction center W protein, chloroplastic (PSII 6.1 kDa protein) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; photosynthesis [GO:0015979]; photosystem II stabilization [GO:0042549] locus:2064407; AT2G30570 photosystem II reaction center W protein Photosystem II reaction center W protein, chloroplastic (PSII 6.1 kDa protein),Os05g0508900 protein Q5ZBY9,Q6L4X1 PSBW_ORYSJ,Q6L4X1_ORYSJ PSBW Os01g0773700 LOC_Os01g56680 P0490D09.17,Os05g0508900 Os05g0508900 OsJ_19144 OSJNBb0108E17.9 OSNPB_050508900 FUNCTION: Stabilizes dimeric photosytem II (PSII). In its absence no dimeric PSII accumulates and there is a reduction of monomeric PSII (By similarity). {ECO:0000250|UniProtKB:Q39194}. ENOG411E62G Q9LM24 FL1L_ARATH Protein FLOURY 1-like 32809 Protein FLOURY 1-like integral component of membrane [GO:0016021] locus:1006230686; AT1G18265 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411E62F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E62E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E62D MED9 Q8RWA2,Q9C7P3,A0A1P8AME1 MED9_ARATH,Q9C7P3_ARATH,A0A1P8AME1_ARATH Mediator of RNA polymerase II transcription subunit 9,Mediator of RNA polymerase II transcription subunit (Uncharacterized protein F15D2.15),Mediator of RNA polymerase II transcription subunit-like protein FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors. 28585,10461,27251 Mediator of RNA polymerase II transcription subunit 9,Mediator of RNA polymerase II transcription subunit (Uncharacterized protein F15D2.15),Mediator of RNA polymerase II transcription subunit-like protein mediator complex [GO:0016592]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021] locus:2205662;,locus:2013768; AT1G55080,AT1G29580 NA Os01g0501000 protein Q5QMV5 Q5QMV5_ORYSJ Os01g0501000 Os01g0501000 B1080D07.19 OSNPB_010501000 ENOG411E62C Q1G361,Q1G2Y4 Q1G361_ARATH,Q1G2Y4_ARATH Gibberellin-regulated family protein 9738,9809 Gibberellin-regulated family protein locus:4010713424; AT1G10588 Gibberellin regulated protein Gibberellin stimulated transcript related protein 1 (Gibberellin-regulated protein 2, putative, expressed) (Os03g0760800 protein) (cDNA clone:J023113B01, full insert sequence) Q94HA1 Q94HA1_ORYSJ GASR1 LOC_Os03g55290 Os03g0760800 OsJ_12674 OSJNBb0048A17.7 OSNPB_030760800 ENOG411E62Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E62Y Q9FGY5 Q9FGY5_ARATH Similarity to unknown protein 19876 Similarity to unknown protein locus:2157824; AT5G49600 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411E62X Q9SGE3 H2B2_ARATH Histone H2B.2 (HTB8) FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. 27221 Histone H2B.2 (HTB8) nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982] locus:2199988; AT1G08170 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling Os09g0570850 protein A0A0P0XRT5 A0A0P0XRT5_ORYSJ Os09g0570850 OSNPB_090570850 ENOG411E62W LBD23,LBD24 P59467,P59468 LBD23_ARATH,LBD24_ARATH LOB domain-containing protein 23 (ASYMMETRIC LEAVES 2-like protein 14) (AS2-like protein 14),LOB domain-containing protein 24 (ASYMMETRIC LEAVES 2-like protein 13) (AS2-like protein 13) 13692,13684 LOB domain-containing protein 23 (ASYMMETRIC LEAVES 2-like protein 14) (AS2-like protein 14),LOB domain-containing protein 24 (ASYMMETRIC LEAVES 2-like protein 13) (AS2-like protein 13) membrane [GO:0016020] locus:2090852;,locus:2090812; AT3G26620,AT3G26660 lob domain-containing protein NA NA NA NA NA NA NA ENOG411E62V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0516900 protein) (cDNA clone:002-121-E10, full insert sequence) Q7XCS8 Q7XCS8_ORYSJ Os10g0516900 LOC_Os10g37290 Os10g0516900 OSJNBa0076F20.15 OSNPB_100516900 ENOG411E62U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein PHLOEM PROTEIN 2-LIKE NA NA NA NA NA NA NA ENOG411E62T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0525600 protein Q0E0T0 Q0E0T0_ORYSJ Os02g0525600 Os02g0525600 OsJ_06964 OSNPB_020525600 ENOG411E62S MXK3.21 Q9LV80 Q9LV80_ARATH At5g64980 (Gb|AAD15341.1) (Transcription factor) 38383 At5g64980 (Gb|AAD15341.1) (Transcription factor) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366] locus:2177649; AT5G64980 NA NA NA NA NA NA NA NA ENOG411E62R Q9S7U3 Q9S7U3_ARATH At4g12520 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (PEARLI 1-like protein) 13264 At4g12520 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (PEARLI 1-like protein) endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506] locus:2135545;locus:2135555; AT4G12510AT4G12520; 14 kDa proline-rich protein DC2.15 NA NA NA NA NA NA NA ENOG411E62Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E62P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os06g0210600 protein A0A0P0WUF9 A0A0P0WUF9_ORYSJ Os06g0210600 OSNPB_060210600 ENOG411E629 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE104 protein (Os01g0764200 protein) Q94DX8 Q94DX8_ORYSJ Os01g0764200 OsCLE104 OSNPB_010764200 P0403C05.6 ENOG411E628 Q1PE44,F4JYU9,F4JYV0 Q1PE44_ARATH,F4JYU9_ARATH,F4JYV0_ARATH Uncharacterized protein,Sarcosine dehydrogenase-2C protein 21046,13600,18164 Uncharacterized protein,Sarcosine dehydrogenase-2C protein locus:2137747;,locus:5019474876;,locus:2153418; AT4G27660,AT5G54148,AT5G54150 NA NA NA NA NA NA NA NA ENOG411E626 Q8LAH4 Q8LAH4_ARATH RmlC-like cupins superfamily protein 12155 RmlC-like cupins superfamily protein locus:505006531; AT4G28703 Protein of unknown function (DUF861) NA NA NA NA NA NA NA ENOG411E625 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0508900 protein) (cDNA clone:002-170-F06, full insert sequence) Q8LN77 Q8LN77_ORYSJ Os10g0508900 LOC_Os10g36520 Os10g0508900 OSJNBb0091N21.43 OSNPB_100508900 ENOG411E623 Q8LCB5,Q940I1 Q8LCB5_ARATH,Q940I1_ARATH At5g57123 (Uncharacterized protein At5g57123),Uncharacterized protein 7832,7816 At5g57123 (Uncharacterized protein At5g57123),Uncharacterized protein locus:504954859;,locus:504955497; AT5G57123,AT4G29905 NA Os06g0660400 protein (Fragment) A0A0P0WZS7 A0A0P0WZS7_ORYSJ Os06g0660400 OSNPB_060660400 ENOG411E621 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os03g0834100 protein,Os03g0295300 protein (Fragment) Q75LI4,Q0DSQ2 Q75LI4_ORYSJ,Q0DSQ2_ORYSJ Os03g0834100 LOC_Os03g61840 OsJ_13258 OSJNBa0096I06.23 OSNPB_030834100,Os03g0295300 Os03g0295300 OSNPB_030295300 ENOG411E620 EM6 Q02973 EM6_ARATH Em-like protein GEA6 Premature dehydration of seeds and dehiscence of siliques at distal end-W. Marcotte-2006 FUNCTION: It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development. 9934 Em-like protein GEA6 cytosol [GO:0005829]; acquisition of desiccation tolerance in seed [GO:0048700]; response to abscisic acid [GO:0009737]; seed development [GO:0048316] TISSUE SPECIFICITY: Present only in nearly dry and dry seeds. locus:2065041; AT2G40170 acquisition of desiccation tolerance in seed Embryonic abundant protein 1,Os05g0349800 protein (Fragment) P46520,A0A0N7KKL2 EMP1_ORYSJ,A0A0N7KKL2_ORYSJ EMP1 EM Os05g0349800 LOC_Os05g28210 OsJ_18167 OSJNBa0077J17.4,Os05g0349800 OSNPB_050349800 FUNCTION: Em protein may act as a cytoplasm protectant during desiccation. MISCELLANEOUS: The induction of Em proteins by abscisic acid may be mediated by the cis-element, termed the ABA-responsive element (ABRE), which binds a Leucine-zipper protein, Em bp1. ENOG411DSBE UMAMIT19 F4HZQ7,Q9LPF1,O80638,Q9SUF1,Q501F8,A0A1P8AQM3 WTR5_ARATH,WTR8_ARATH,WTR14_ARATH,WTR31_ARATH,WTR32_ARATH,A0A1P8AQM3_ARATH WAT1-related protein At1g21890,WAT1-related protein At1g44800,WAT1-related protein At2g39510,WAT1-related protein At4g08290,WAT1-related protein At4g08300,WAT1-related protein 41715,39947,40674,41723,40517,37780 WAT1-related protein At1g21890,WAT1-related protein At1g44800,WAT1-related protein At2g39510,WAT1-related protein At4g08290,WAT1-related protein At4g08300,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid export [GO:0032973]; amino acid homeostasis [GO:0080144]; amino acid import [GO:0043090],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; L-amino acid efflux transmembrane transporter activity [GO:0034639]; amino acid export [GO:0032973]; amino acid homeostasis [GO:0080144]; amino acid import [GO:0043090]; amino acid transport [GO:0006865],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; L-glutamine transmembrane transporter activity [GO:0015186]; amino acid homeostasis [GO:0080144]; amino acid transmembrane export [GO:0044746]; L-glutamate import across plasma membrane [GO:0098712]; seed development [GO:0048316],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2201148;,locus:2194864;,locus:2039792;,locus:2132447;,locus:2132457; AT1G21890,AT1G44800,AT2G39510,AT4G08290,AT4G08300 auxin-induced protein WAT1-related protein,WAT1-related protein (Fragment) Q6ZGK2,Q33A72,Q69TY0,A0A0P0XSV0 Q6ZGK2_ORYSJ,Q33A72_ORYSJ,Q69TY0_ORYSJ,A0A0P0XSV0_ORYSJ Os02g0768300 OJ1767_D02.10 OsJ_08519 OSNPB_020768300,LOC_Os10g14920 Os10g0210500 OsJ_31032 OSNPB_100210500,P0021C04.4 Os06g0210000 OSNPB_060210000,Os10g0175800 OSNPB_100175800 ENOG411DSBD ALIS2,MCL19.21 Q67YS6,A0A1P8B9W3,A0A1P8B9V8 ALIS2_ARATH,A0A1P8B9W3_ARATH,A0A1P8B9V8_ARATH Putative ALA-interacting subunit 2 (AtALIS2),LEM3 (Ligand-effect modulator 3) family protein / CDC50 family protein R-ATH-6798695; 39546,28353,37981 Putative ALA-interacting subunit 2 (AtALIS2),LEM3 (Ligand-effect modulator 3) family protein / CDC50 family protein integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18344284}. locus:2161453; AT5G46150 ALA-Interacting Subunit ALA-interacting subunit Q10CF0 Q10CF0_ORYSJ Os03g0785500 LOC_Os03g57170 Os03g0785500 OsJ_12855 OSNPB_030785500 ENOG411DSBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Anion-transporting ATPase NA NA NA NA NA NA NA ENOG411DSBF Q9LSM7,A0A1P8BGH2 Q9LSM7_ARATH,A0A1P8BGH2_ARATH Cyclin-dependent protein kinase-like (Protein kinase superfamily protein),Protein kinase superfamily protein R-ATH-674695;R-ATH-6796648; 64288,54979 Cyclin-dependent protein kinase-like (Protein kinase superfamily protein),Protein kinase superfamily protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2152740; AT5G50860 serine threonine-protein kinase At1g54610-like NA NA NA NA NA NA NA ENOG411DSBA BLUS1 O23304 BLUS1_ARATH Serine/threonine-protein kinase BLUS1 (EC 2.7.11.1) (Protein BLUE LIGHT SIGNALING 1) DISRUPTION PHENOTYPE: Defective in leaf temperature decreases and stomatal opening in response to blue light. {ECO:0000269|PubMed:23811955}. FUNCTION: Ser/Thr protein kinase mediating a primary step for phototropin signaling in guard cells. Essential for stomatal opening. {ECO:0000269|PubMed:23811955}. 2.7.11.1 54381 Serine/threonine-protein kinase BLUS1 (EC 2.7.11.1) (Protein BLUE LIGHT SIGNALING 1) cytosol [GO:0005829]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; regulation of stomatal opening [GO:1902456]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] TISSUE SPECIFICITY: Expressed in guard cells. Not detected in mesophyll cells. {ECO:0000269|PubMed:23811955}. locus:2129780; AT4G14480 serine threonine-protein kinase fray2-like NA NA NA NA NA NA NA ENOG411DSBC CBL3,CBL6,CBL2,CBL7 Q8LEM7,Q9C5P6,Q8LAS7,Q9SUA6 CNBL3_ARATH,CNBL6_ARATH,CNBL2_ARATH,CNBL7_ARATH Calcineurin B-like protein 3 (SOS3-like calcium-binding protein 6),Calcineurin B-like protein 6 (SOS3-like calcium-binding protein 2),Calcineurin B-like protein 2 (SOS3-like calcium-binding protein 1),Calcineurin B-like protein 7 (SOS3-like calcium-binding protein 3) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions; due to partial redundancy with CLB2. Tolerant to low-K(+) stress. Clb2 and cbl3 double mutants show stunted growth, reduced fertility and necrotic lesions at leaf tips. They also have a reduced vacuolar H(+)-ATPase activity, are hypersensitive to excessive metal ions and are more tolerant to low-K(+) conditions. {ECO:0000269|PubMed:23109687, ECO:0000269|PubMed:23184060}.,DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions; due to partial redundancy with CLB3. Chlorotic symptoms under low-K(+) stress. Clb2 and cbl3 double mutants show stunted growth, reduced fertility and necrotic lesions at leaf tips. They have also a reduced vacuolar H(+)-ATPase activity, are hypersensitive to excessive metal ions and are more tolerant to low-K(+) conditions. {ECO:0000269|PubMed:22547024, ECO:0000269|PubMed:23109687, ECO:0000269|PubMed:23184060}. FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binds calcium ions. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Mediates the activation of AKT1 by CIPK proteins (CIPK6, CIPK16, and CIPK23) in response to low potassium conditions and in the context of stomatal movement. Negatively regulates the enzyme activity of MTN1 in the presence of calcium. {ECO:0000269|PubMed:17898163, ECO:0000269|PubMed:23109687}.,FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner.,FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Binds four calcium ions per subunit. Mediates the activation of AKT1 by CIPK proteins (CIPK6, CIPK16, and CIPK23) in response to low potassium conditions and in the context of stomatal movement. Mediates the inactivation of the proton pump AHA2 by CIPK11. Probably involved in regulating signaling responses to abscisic acid. {ECO:0000269|PubMed:17483306, ECO:0000269|PubMed:17898163, ECO:0000269|PubMed:22547024}. MISCELLANEOUS: Blockage of vesicle trafficking by Brefeldin-A does not affect S-acylation and vacuolar membrane targeting of CBL2. 26032,26029,25809,24404 Calcineurin B-like protein 3 (SOS3-like calcium-binding protein 6),Calcineurin B-like protein 6 (SOS3-like calcium-binding protein 2),Calcineurin B-like protein 2 (SOS3-like calcium-binding protein 1),Calcineurin B-like protein 7 (SOS3-like calcium-binding protein 3) membrane [GO:0016020]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; detection of calcium ion [GO:0005513]; potassium ion homeostasis [GO:0055075],vacuolar membrane [GO:0005774]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722],cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plant-type vacuole membrane [GO:0009705]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722]; potassium ion homeostasis [GO:0055075],cytoplasm [GO:0005737]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; detection of calcium ion [GO:0005513] DEVELOPMENTAL STAGE: Expressed early during germination and increases to a peak level when seedlings are established. {ECO:0000269|PubMed:23184060}. TISSUE SPECIFICITY: Ubiquitous. Stronger expression in roots. Expressed in root tip and root hair zone, leaf veins, vascular bundles and vasculature of sepals. {ECO:0000269|PubMed:10200328, ECO:0000269|PubMed:23109687, ECO:0000269|PubMed:23184060}.,TISSUE SPECIFICITY: Ubiquitous. Stronger expression in aerial parts. Expressed in guard cells, meristems and elongation zones of roots, mesophyll cells of leaves, cortex and pith of inflorescence stems and anthers and stamen filaments in flowers. {ECO:0000269|PubMed:10200328, ECO:0000269|PubMed:11577192, ECO:0000269|PubMed:23109687, ECO:0000269|PubMed:23184060}. locus:2133867;,locus:2130499;,locus:2161760;,locus:2133857; AT4G26570,AT4G16350,AT5G55990,AT4G26560 calcineurin b-like protein Calcineurin B-like protein 2,Calcineurin B-like protein 3,Os02g0480800 protein (Fragment) Q3HRP5,Q75LU8,A0A0P0VJ08 CNBL2_ORYSJ,CNBL3_ORYSJ,A0A0P0VJ08_ORYSJ CBL2 Os12g0597000 LOC_Os12g40510 OsJ_36745,CBL3 Os03g0626800 LOC_Os03g42840 OsJ_11802 OSJNBa0002I03.21 OSJNBb0013K08.3,Os02g0480800 OSNPB_020480800 FUNCTION: Acts as a calcium sensor. May promote vacuolation of aleurone cells in response to signal induced by gibberellin. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250, ECO:0000269|PubMed:15980189}.,FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DSBB EIF2 GAMMA,MSF3.10 O64490,F4IRF5,F4JQU1,F4JQU2,A0A1P8B1G6 O64490_ARATH,F4IRF5_ARATH,F4JQU1_ARATH,F4JQU2_ARATH,A0A1P8B1G6_ARATH Eukaryotic translation initiation factor 2 gamma subunit (F20D22.6 protein) (Protein synthesis initiation factor eIF2 gamma) (Strong similarity to initiation factor eIF-2, gb|U37354 from S),Translation elongation factor EF1A/initiation factor IF2gamma family protein ARA:GQT-81-MONOMER; R-ATH-156827;R-ATH-382556;R-ATH-72695;R-ATH-72702;R-ATH-72731; 50853,51330,51518,31079,41514 Eukaryotic translation initiation factor 2 gamma subunit (F20D22.6 protein) (Protein synthesis initiation factor eIF2 gamma) (Strong similarity to initiation factor eIF-2, gb|U37354 from S),Translation elongation factor EF1A/initiation factor IF2gamma family protein cytosol [GO:0005829]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation initiation factor activity [GO:0003743],integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; serine-type peptidase activity [GO:0008236]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743],GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743] locus:2020260;,locus:2053972;,locus:2141857; AT1G04170,AT2G18720,AT4G18330 eukaryotic translation initiation factor 2 Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed (Os12g0607100 protein),Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed (Os12g0176800 protein) (cDNA clone:J023003F18, full insert sequence),Os12g0607100 protein (Fragment) Q2QME5,Q2QWZ1,A0A0P0YBZ8 Q2QME5_ORYSJ,Q2QWZ1_ORYSJ,A0A0P0YBZ8_ORYSJ Os12g0607100 LOC_Os12g41400 Os12g0607100 OSNPB_120607100,LOC_Os12g07740 Os12g0176800 OSNPB_120176800,Os12g0607100 OSNPB_120607100 ENOG411DSBM GTE4 Q9LNC4 GTE4_ARATH Transcription factor GTE4 (Bromodomain-containing protein GTE4) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E4) DISRUPTION PHENOTYPE: Cell numbers are significantly reduced in most of the organs. Cell cycle reactivation is delayed in germinating seeds, and a premature switch from mitosis to endoreduplication occurs. Furthermore, a partial loss of root quiescent center (QC) identity is observed. {ECO:0000269|PubMed:20032077, ECO:0000269|PubMed:20495359}. Delayed germination and rosette development; Dwarf; Short roots; Abnormal lateral root formation; Small, slightly serrated leaves; Short, thin inflorescence stems; Decreased stamen number-M. Kater-2010 FUNCTION: Involved in the activation and maintenance of cell division in the meristems and by this controls cell numbers in differentiated organs. Its action in cell cycle regulation may be directed through the RB-E2F pathway. {ECO:0000269|PubMed:20032077, ECO:0000269|PubMed:20495359}. 84095 Transcription factor GTE4 (Bromodomain-containing protein GTE4) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E4) nucleus [GO:0005634]; DNA mediated transformation [GO:0009294]; positive regulation of mitotic cell cycle [GO:0045931]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:20032077}. locus:2038565; AT1G06230 Transcription factor Os02g0250300 protein,Os01g0214300 protein (Fragment) A3A538,A0A0N7KCJ7 A3A538_ORYSJ,A0A0N7KCJ7_ORYSJ Os02g0250300 OsJ_06088 OSNPB_020250300,Os01g0214300 OSNPB_010214300 ENOG411DSBI Q9C9U0,Q9LS88 PP118_ARATH,PP250_ARATH Pentatricopeptide repeat-containing protein At1g73710,Pentatricopeptide repeat-containing protein At3g23020 110657,95319 Pentatricopeptide repeat-containing protein At1g73710,Pentatricopeptide repeat-containing protein At3g23020 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2027744;,locus:2094573; AT1G73710,AT3G23020 Pentatricopeptide repeat-containing protein Os03g0162900 protein (Pentatricopeptide, putative, expressed),Crp1-like protein (Os07g0472100 protein),Os03g0173800 protein Q10RD7,Q8L4S1,A0A0P0VTN0 Q10RD7_ORYSJ,Q8L4S1_ORYSJ,A0A0P0VTN0_ORYSJ LOC_Os03g06710 Os03g0162900 OsJ_09514 OSNPB_030162900,OJ1103_E04.131 Os07g0472100 P0675B10.120 OSNPB_070472100,Os03g0173800 OSNPB_030173800 ENOG411DSBK T1B9.26 Q9SFT9 Q9SFT9_ARATH PPPDE putative thiol peptidase family protein (T1B9.26 protein) (Uncharacterized protein At3g07090) 28846 PPPDE putative thiol peptidase family protein (T1B9.26 protein) (Uncharacterized protein At3g07090) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2098560; AT3G07090 PPPDE peptidase domain-containing protein Os02g0814000 protein (cDNA clone:006-210-B11, full insert sequence) (cDNA clone:006-306-A06, full insert sequence) (cDNA clone:J033114L12, full insert sequence),Os02g0788133 protein Q6K3E0,A0A0P0VQG1 Q6K3E0_ORYSJ,A0A0P0VQG1_ORYSJ Os02g0814000 OJ1293_E04.15 OsJ_08846 OSJNBa0053L11.37 OSNPB_020814000,Os02g0788133 OSNPB_020788133 ENOG411DSBT MOP9.8 Q9FNF6,A0A1R7T3L2 Q9FNF6_ARATH,A0A1R7T3L2_ARATH Dipeptidyl peptidase IV-like protein (Prolyl oligopeptidase family protein) (Putative dipeptidyl peptidase IV),Prolyl oligopeptidase family protein 83851,65431 Dipeptidyl peptidase IV-like protein (Prolyl oligopeptidase family protein) (Putative dipeptidyl peptidase IV),Prolyl oligopeptidase family protein cytosol [GO:0005829]; serine-type peptidase activity [GO:0008236],integral component of membrane [GO:0016021]; proteolysis [GO:0006508] locus:2169789; AT5G24260 Dipeptidyl peptidase Os02g0290600 protein (Fragment) A0A0P0VHT5,A0A0P0VHT6 A0A0P0VHT5_ORYSJ,A0A0P0VHT6_ORYSJ Os02g0290600 OSNPB_020290600 ENOG411DSBV DIN4,BCDH BETA1 Q9LDY2,Q9SAV3 ODBB2_ARATH,ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 2, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDE1B) (BCKDH E1-beta) (Protein DARK INDUCIBLE 4),2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDE1B) (BCKDH E1-beta) FUNCTION: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required during sugar starvation and acts under the control of a sugar-sensing mechanism involving Ser/Thr kinases and phosphatases. {ECO:0000250, ECO:0000269|PubMed:11080291, ECO:0000269|PubMed:11917081}.,FUNCTION: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. ARA:AT3G13450-MONOMER;,ARA:AT1G55510-MONOMER; R-ATH-70895; 1.2.4.4 39419,38735 2-oxoisovalerate dehydrogenase subunit beta 2, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDE1B) (BCKDH E1-beta) (Protein DARK INDUCIBLE 4),2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDE1B) (BCKDH E1-beta) mitochondrial matrix [GO:0005759]; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity [GO:0003863]; cellular response to sucrose starvation [GO:0043617]; response to absence of light [GO:0009646]; response to sucrose [GO:0009744],mitochondrial matrix [GO:0005759]; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity [GO:0003863] DEVELOPMENTAL STAGE: Barely detected in non senescent green leaves, accumulated slightly at the early stage of leaf senescence and strongly expressed at the late stage of leaf senescence. {ECO:0000269|PubMed:10681595}. TISSUE SPECIFICITY: Expressed in the non-photosynthetic organs such as siliques, flowers and roots. {ECO:0000269|PubMed:10681595}. locus:2092835;,locus:2193889; AT3G13450,AT1G55510 2-oxoisovalerate dehydrogenase subunit beta Os07g0170100 protein (Putative branched-chain alpha-keto acid decarboxylase E1 beta subunit) (cDNA clone:001-202-D07, full insert sequence) Q69LD2 Q69LD2_ORYSJ Os07g0170100 OsJ_23251 OSJNBa0050F10.25 OSNPB_070170100 ENOG411DSBP MSJ1.22 Q9FMF1 Q9FMF1_ARATH AT5g64380/MSJ1_22 (Fructose-bisphosphatase-like protein) (Inositol monophosphatase family protein) ARA:AT5G64380-MONOMER; 43976 AT5g64380/MSJ1_22 (Fructose-bisphosphatase-like protein) (Inositol monophosphatase family protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; fructose 1,6-bisphosphate 1-phosphatase activity [GO:0042132]; fructose 1,6-bisphosphate metabolic process [GO:0030388]; fructose 6-phosphate metabolic process [GO:0006002]; fructose metabolic process [GO:0006000]; gluconeogenesis [GO:0006094]; sucrose biosynthetic process [GO:0005986] locus:2173363; AT5G64380 fructose-16-bisphosphatase Os06g0664200 protein (Putative ructose 1,6-bisphosphatase) (cDNA clone:J023002G19, full insert sequence) Q655Y9 Q655Y9_ORYSJ P0473H04.3-1 Os06g0664200 OSNPB_060664200 ENOG411DSBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Os03g0121200 protein A0A0P0VSD5 A0A0P0VSD5_ORYSJ Os03g0121200 OSNPB_030121200 ENOG411DSBR UNE2 Q9C9R9,Q9C5L6,A0A1P8BBJ6,A0A1P8BBK2 Q9C9R9_ARATH,Q9C5L6_ARATH,A0A1P8BBJ6_ARATH,A0A1P8BBK2_ARATH At1g78130 (Major facilitator superfamily protein) (Putative transporter; 34935-36578) (Transporter like protein),Major facilitator superfamily protein (Uncharacterized protein At5g10190),Major facilitator superfamily protein 52609,52905,39149,37120 At1g78130 (Major facilitator superfamily protein) (Putative transporter; 34935-36578) (Transporter like protein),Major facilitator superfamily protein (Uncharacterized protein At5g10190),Major facilitator superfamily protein integral component of membrane [GO:0016021]; double fertilization forming a zygote and endosperm [GO:0009567]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2194749;,locus:2184163; AT1G78130,AT5G10190 transporter Os08g0409900 protein (Transporter-like protein),Os09g0371000 protein (Transporter-like protein) (cDNA clone:002-120-E09, full insert sequence),Os09g0371300 protein (Fragment) Q6ZAK1,Q6H4F1,A0A0P0XLR0 Q6ZAK1_ORYSJ,Q6H4F1_ORYSJ,A0A0P0XLR0_ORYSJ Os08g0409900 OSNPB_080409900 P0042B03.30,Os09g0371000 Os09g0371000 B1168F12.22 OsJ_29119 OSNPB_090371000,Os09g0371300 OSNPB_090371300 ENOG411DSBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein NB-ARC domain containing protein, expressed (Os12g0467300 protein),Disease resistance protein RPM1-like (Os08g0387700 protein),Os12g0468300 protein,Os01g0314700 protein,Os12g0466601 protein,Os12g0466950 protein,Os10g0324100 protein Q2QRB9,Q6Z012,A0A0P0YA15,A0A0P0V1T6,A0A0P0YA47,A0A0P0Y9W0,A0A0P0XST4 Q2QRB9_ORYSJ,Q6Z012_ORYSJ,A0A0P0YA15_ORYSJ,A0A0P0V1T6_ORYSJ,A0A0P0YA47_ORYSJ,A0A0P0Y9W0_ORYSJ,A0A0P0XST4_ORYSJ LOC_Os12g28100 Os12g0467300 OSNPB_120467300,P0473F05.0-3 Os08g0387700 OSNPB_080387700,Os12g0468300 OSNPB_120468300,Os01g0314700 OSNPB_010314700,Os12g0466601 OSNPB_120466601,Os12g0466950 OSNPB_120466950,Os10g0324100 OSNPB_100324100 ENOG411DSBX TOC75-4,TOC75-3,TOC75-I,TOC75-IV Q5IZC8,Q9STE8,Q9C8B7,Q9C8B6,A0A1P8B6V9,A0A1P8B6W0 TC754_ARATH,TC753_ARATH,Q9C8B7_ARATH,Q9C8B6_ARATH,A0A1P8B6V9_ARATH,A0A1P8B6W0_ARATH Protein TOC75-4, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 4) (AtTOC75-IV),Protein TOC75-3, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III),Translocon outer membrane complex 75-I (Uncharacterized protein F10O5.4),Uncharacterized protein F10O5.5,Outer membrane OMP85 family protein DISRUPTION PHENOTYPE: Plants have an embryo development arrested at the two cells stage. {ECO:0000269|PubMed:15908591}. Mutants show inefficient deetiolation contain more cytosolic inclusions than wild type Slightly altered etioplast morphology; No other phenotypes detected-P. Jarvis-2005,Embryo defective; Preglobular-P. Jarvis-2007 FUNCTION: Mediates the insertion of proteins targeted to the outer membrane of chloroplasts. Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane (By similarity). Required for etioplast formation and/or etioplast-chloroplast transition during deetiolation. {ECO:0000250, ECO:0000269|PubMed:15908591}.,FUNCTION: Essential protein. Mediates the insertion of proteins targeted to the outer membrane of chloroplasts (By similarity). Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane. {ECO:0000250, ECO:0000269|PubMed:15908591}. 43632,89189,43550,23929,44957,35692 Protein TOC75-4, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 4) (AtTOC75-IV),Protein TOC75-3, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III),Translocon outer membrane complex 75-I (Uncharacterized protein F10O5.4),Uncharacterized protein F10O5.5,Outer membrane OMP85 family protein integral component of chloroplast outer membrane [GO:0031359]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; etioplast organization [GO:0009662]; protein targeting to chloroplast [GO:0045036],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of chloroplast outer membrane [GO:0031359]; membrane [GO:0016020]; plastid [GO:0009536]; Toc complex [GO:0010006]; vacuolar membrane [GO:0005774]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; chloroplast organization [GO:0009658]; embryonic morphogenesis [GO:0048598]; protein import into chloroplast stroma [GO:0045037]; protein targeting to chloroplast [GO:0045036]; response to cytokinin [GO:0009735],intracellular [GO:0005622]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; intracellular protein transport [GO:0006886],intracellular [GO:0005622]; outer membrane [GO:0019867]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; intracellular protein transport [GO:0006886] DEVELOPMENTAL STAGE: Expressed predominantly during the early stages of plant growth, peaking at three weeks after germination (at protein level). {ECO:0000269|PubMed:15090618}. TISSUE SPECIFICITY: Expressed ubiquitously at low levels. {ECO:0000269|PubMed:15908591}.,TISSUE SPECIFICITY: Mostly expressed in young and actively dividing photosynthetic tissues and, to a lower extent, in old leaves and roots. Particularly low levels in leaves after etiolation. {ECO:0000269|PubMed:15908591}. locus:2122328;,locus:2102767;,locus:2007606;,locus:2007621; AT4G09080,AT3G46740,AT1G35860,AT1G35880 translocon at the outer envelope membrane of chloroplasts 75-III Protein TOC75, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts),Os03g0271200 protein (Fragment) Q84Q83,A0A0P0VVX9 TOC75_ORYSJ,A0A0P0VVX9_ORYSJ TOC75 Os03g0271200 LOC_Os03g16440 OJ1261C08.8,Os03g0271200 OSNPB_030271200 FUNCTION: Mediates the insertion of proteins targeted to the outer membrane of chloroplasts. Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane (By similarity). {ECO:0000250}. ENOG411DSBZ CYCB1-4,CYCB2-2,CYCB2-1,CYCB2-3,CYCB2-5,CYCB2-4,CYCB1;5,CYCB2;4,CYCB2:2 O48790,Q39070,Q39068,Q9LDM4,Q9LM91,Q9SFW6,F4HUZ8,A0A1P8AWH0,A0A1P8B7U0,A0A1P8AWI4,A0A1P8AWG4 CCB14_ARATH,CCB22_ARATH,CCB21_ARATH,CCB23_ARATH,CCB25_ARATH,CCB24_ARATH,F4HUZ8_ARATH,A0A1P8AWH0_ARATH,A0A1P8B7U0_ARATH,A0A1P8AWI4_ARATH,A0A1P8AWG4_ARATH Cyclin-B1-4 (G2/mitotic-specific cyclin-B1-4) (CycB1;4),Cyclin-B2-2 (Cyc2b-At) (Cyclin-2b) (G2/mitotic-specific cyclin-B2-2) (CycB2;2),Cyclin-B2-1 (Cyc2a-At) (Cyclin-2a) (G2/mitotic-specific cyclin-B2-1) (CycB2;1),Cyclin-B2-3 (G2/mitotic-specific cyclin-B2-3) (CycB2;3),Cyclin-B2-5 (G2/mitotic-specific cyclin-B2-5) (CycB2;5),Cyclin-B2-4 (G2/mitotic-specific cyclin-B2-4) (CycB2;4),CYCLIN B15,CYCLIN B24,Cyclin B22 R-ATH-176408;R-ATH-2299718;R-ATH-2500257;R-ATH-4419969;R-ATH-6804114;R-ATH-69273;R-ATH-69478;R-ATH-75035; 43571,49787,49243,48864,30801,49241,54734,52416,44291,44414,38908 Cyclin-B1-4 (G2/mitotic-specific cyclin-B1-4) (CycB1;4),Cyclin-B2-2 (Cyc2b-At) (Cyclin-2b) (G2/mitotic-specific cyclin-B2-2) (CycB2;2),Cyclin-B2-1 (Cyc2a-At) (Cyclin-2a) (G2/mitotic-specific cyclin-B2-1) (CycB2;1),Cyclin-B2-3 (G2/mitotic-specific cyclin-B2-3) (CycB2;3),Cyclin-B2-5 (G2/mitotic-specific cyclin-B2-5) (CycB2;5),Cyclin-B2-4 (G2/mitotic-specific cyclin-B2-4) (CycB2;4),CYCLIN B15,CYCLIN B24,Cyclin B22 nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301],nucleus [GO:0005634] DEVELOPMENTAL STAGE: Expressed in the G2/M phases. {ECO:0000269|PubMed:16517759}. TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:7972055}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:7972055}. locus:2043818;,locus:2127948;,locus:2057243;,locus:2030482;,locus:2030457;,locus:2014574; AT2G26760,AT4G35620,AT2G17620,AT1G20610,AT1G20590,AT1G76310,AT1G34460 G2 mitotic-specific Cyclin-B2-2 (CycB2-Os2) (G2/mitotic-specific cyclin-B2-2) (CycB2;2),Cyclin-B1-5 (G2/mitotic-specific cyclin-B1-5) (CycB1;5),Cyclin-B2-1 (CycB2-Os1) (G2/mitotic-specific cyclin-B2-1) (CycB2;1),Cyclin-B1-1 (G2/mitotic-specific cyclin-B1-1) (CycB1;1),Os02g0800500 protein (Os02g0801300 protein) (Fragment),Os05g0493500 protein (Fragment),Os01g0805600 protein,Os05g0501350 protein (Fragment) Q0D9C7,Q0DH40,Q7XSJ6,Q0JIF2,A0A0P0VQU5,A0A0P0WP44,A0A0P0V9C6,A0A0P0WPA9 CCB22_ORYSJ,CCB15_ORYSJ,CCB21_ORYSJ,CCB11_ORYSJ,A0A0P0VQU5_ORYSJ,A0A0P0WP44_ORYSJ,A0A0P0V9C6_ORYSJ,A0A0P0WPA9_ORYSJ CYCB2-2 CYCB2 Os06g0726800 LOC_Os06g51110 P0017G10.10,CYCB1-5 Os05g0493500 LOC_Os05g41390 OsJ_018267 OSJNBa0088I06.19,CYCB2-1 CYCB2 Os04g0563700 LOC_Os04g47580 OsJ_15792 OSJNBb0078D11.10,CYCB1-1 Os01g0805600 LOC_Os01g59120 P0034E02.58,Os02g0801300 Os02g0800500 OSNPB_020800500 OSNPB_020801300,Os05g0493500 OSNPB_050493500,Os01g0805600 OSNPB_010805600,Os05g0501350 OSNPB_050501350 FUNCTION: Involved in the control of the cell cycle at the G2/M (mitosis) transition. May associate to CDKB2-1 and activate CDKB2-1 kinase activity to promote cell division. {ECO:0000269|PubMed:10517318, ECO:0000269|PubMed:12753582}.,FUNCTION: Involved in the control of the cell cycle at the G2/M (mitosis) transition. May activate CDKB2-1 kinase. {ECO:0000269|PubMed:10517318, ECO:0000269|PubMed:12753582}. ENOG411DSB1 CSD2 O78310 SODC2_ARATH Superoxide dismutase [Cu-Zn] 2, chloroplastic (EC 1.15.1.1) (Copper/zinc superoxide dismutase 2) DISRUPTION PHENOTYPE: Growth retardation (e.g. delayed flowering) and abnormal chloroplasts (e.g. less organized with fewer stacks). This phenotype is reversed under very low light conditions. Enhanced tolerance to oxidative stress. {ECO:0000269|PubMed:12885779}. FUNCTION: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Mediates tolerance to stress, including photo-oxidative stress. {ECO:0000269|PubMed:11457901, ECO:0000269|PubMed:12885779, ECO:0000269|PubMed:16861386}. R-ATH-114608;R-ATH-3299685; Prion diseases (05020),Peroxisome (04146),Amyotrophic lateral sclerosis (ALS) (05014),Huntington's disease (05016) 1.15.1.1 22244 Superoxide dismutase [Cu-Zn] 2, chloroplastic (EC 1.15.1.1) (Copper/zinc superoxide dismutase 2) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; extracellular space [GO:0005615]; thylakoid [GO:0009579]; copper ion binding [GO:0005507]; superoxide dismutase activity [GO:0004784]; zinc ion binding [GO:0008270]; cellular response to light intensity [GO:0071484]; cellular response to oxidative stress [GO:0034599]; cellular response to ozone [GO:0071457]; cellular response to salt stress [GO:0071472]; cellular response to sucrose stimulus [GO:0071329]; cellular response to UV-B [GO:0071493]; gene silencing by miRNA [GO:0035195]; response to copper ion [GO:0046688]; response to iron ion [GO:0010039]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in leaves (at protein level). The spatial localization is regulated by miR398-mediated silencing. Mostly present in flowers, old rosette leaves and inflorescence, and, to a lower extent, in cauline leaves, stems and roots. {ECO:0000269|PubMed:16861386, ECO:0000269|PubMed:9765550}. locus:2046168; AT2G28190 Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) Superoxide dismutase [Cu-Zn], chloroplastic (EC 1.15.1.1) P93407 SODCP_ORYSJ SODCP Os08g0561700 LOC_Os08g44770 P0543D10.3 P0604E01.43 FUNCTION: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. ENOG411DSB0 CRK1,CRK7 O80673,Q9LET1 CAMK1_ARATH,CAMK7_ARATH CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3),CDPK-related kinase 7 (AtCRK7) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK7) DISRUPTION PHENOTYPE: Impaired basal thermotolerance. {ECO:0000269|PubMed:18466301}. FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Serine/threonine kinase that phosphorylates histone H3. Confers thermotolerance; involved in the heat-shock-mediated calmodulin-dependent signal transduction leading to the activation of heat-shock transcription factors (HSFs); phosphorylates HSFA1A. {ECO:0000250, ECO:0000269|PubMed:15196054, ECO:0000269|PubMed:18466301}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 64315,64547 CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3),CDPK-related kinase 7 (AtCRK7) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK7) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; metal ion binding [GO:0046872]; abscisic acid-activated signaling pathway [GO:0009738]; heat acclimation [GO:0010286]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; metal ion binding [GO:0046872]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2063197;,locus:2103655; AT2G41140,AT3G56760 Calcium calmodulin-dependent serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DSB3 Q9LXC3,A0A1P8BE78 Q9LXC3_ARATH,A0A1P8BE78_ARATH Heat shock protein (Uncharacterized protein F17I14_230),Heat shock protein 44726,36079 Heat shock protein (Uncharacterized protein F17I14_230),Heat shock protein locus:2144786; AT5G09580 NA Os11g0167200 protein (cDNA, clone: J065166P19, full insert sequence) B7F8U1 B7F8U1_ORYSJ Os11g0167200 OsJ_33096 OSNPB_110167200 ENOG411DSB2 B3H5Y5,Q84WW0,A0A1P8APF3,A0A1P8APD7,A0A1P8APF6,A8MS11 B3H5Y5_ARATH,Q84WW0_ARATH,A0A1P8APF3_ARATH,A0A1P8APD7_ARATH,A0A1P8APF6_ARATH,A8MS11_ARATH AT1G73350 protein (Ankyrin repeat protein),Ankyrin repeat protein (Uncharacterized protein At1g73350),Ankyrin repeat protein 18839,22953,18655,23829,20793,23137 AT1G73350 protein (Ankyrin repeat protein),Ankyrin repeat protein (Uncharacterized protein At1g73350),Ankyrin repeat protein integral component of membrane [GO:0016021],nucleus [GO:0005634] locus:2206895; AT1G73350 NA Os02g0637900 protein (cDNA clone:002-170-C09, full insert sequence) Q6H5V7 Q6H5V7_ORYSJ Os02g0637900 Os02g0637900 OSJNBa0014E22.24 OSNPB_020637900 ENOG411DSB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SprT-like family Os03g0219800 protein (Fragment) A0A0P0VUQ8,A0A0P0VUT1,A0A0P0VV07 A0A0P0VUQ8_ORYSJ,A0A0P0VUT1_ORYSJ,A0A0P0VV07_ORYSJ Os03g0219800 OSNPB_030219800 ENOG411EC45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein (Os11g0609820 protein) (Os11g0610240 protein) Q2R1C8 Q2R1C8_ORYSJ Os11g0610240 Os11g0609820 LOC_Os11g39559 LOC_Os11g39609 OsJ_09371 OSNPB_110609820 OSNPB_110610240 ENOG411EC46 RMR3 F4I2Y3 RMR3_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 3 (AtRMR3) FUNCTION: Involved in the trafficking of vacuolar proteins. May function as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) (By similarity). {ECO:0000250}. 46257 Receptor homology region, transmembrane domain- and RING domain-containing protein 3 (AtRMR3) integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; protein storage vacuole membrane [GO:0032586]; metal ion binding [GO:0046872]; protein transport [GO:0015031] locus:2199665; AT1G22670 PA domain NA NA NA NA NA NA NA ENOG411EC4A Q9SR08,Q9SZR7,Q9SIT4 FBK49_ARATH,FB247_ARATH,Q9SIT4_ARATH F-box/kelch-repeat protein At3g04660,Putative F-box protein At4g29970,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g13630) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 44932,32680,34254 F-box/kelch-repeat protein At3g04660,Putative F-box protein At4g29970,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g13630) nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:2084923;,locus:2123904;,locus:2054158; AT3G04660,AT4G29970,AT2G13630 F-box associated domain NA NA NA NA NA NA NA ENOG411EC4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BED zinc finger NA NA NA NA NA NA NA ENOG411EC4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EC4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED Expressed protein (Os03g0438400 protein) (cDNA clone:J023054E02, full insert sequence) Q10J16 Q10J16_ORYSJ Os03g0438400 LOC_Os03g32330 Os03g0438400 OSNPB_030438400 ENOG411EC4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0525400 protein,Os05g0524550 protein,Os09g0265500 protein,Os09g0264950 protein,Os05g0524800 protein A0A0P0WPZ0,A0A0P0WQ18,A0A0P0XJE6,A0A0P0XKC9,A0A0N7KL43 A0A0P0WPZ0_ORYSJ,A0A0P0WQ18_ORYSJ,A0A0P0XJE6_ORYSJ,A0A0P0XKC9_ORYSJ,A0A0N7KL43_ORYSJ Os05g0525400 OSNPB_050525400,Os05g0524550 OSNPB_050524550,Os09g0265500 OSNPB_090265500,Os09g0264950 OSNPB_090264950,Os05g0524800 OSNPB_050524800 ENOG411EC4N MQK4.7,MQJ16.3 Q9FFE8,Q94CK0,Q9FK89,F4KJ46,A0A1P8BHJ4,A0A1P8BHI6,A0A1P8BET2,A0A1P8BC64 Q9FFE8_ARATH,Q94CK0_ARATH,Q9FK89_ARATH,F4KJ46_ARATH,A0A1P8BHJ4_ARATH,A0A1P8BHI6_ARATH,A0A1P8BET2_ARATH,A0A1P8BC64_ARATH Emb|CAB66399.1 (O-acyltransferase (WSD1-like) family protein) (Uncharacterized protein At5g16350),O-acyltransferase (WSD1-like) family protein (Uncharacterized protein At5g12420),Emb|CAB66399.1 (O-acyltransferase (WSD1-like) family protein),O-acyltransferase (WSD1-like) family protein ARA:GQT-90-MONOMER;,ARA:GQT-478-MONOMER;,ARA:GQT-1821-MONOMER; 55105,53996,54478,53582,45295,52833,52952,44893 Emb|CAB66399.1 (O-acyltransferase (WSD1-like) family protein) (Uncharacterized protein At5g16350),O-acyltransferase (WSD1-like) family protein (Uncharacterized protein At5g12420),Emb|CAB66399.1 (O-acyltransferase (WSD1-like) family protein),O-acyltransferase (WSD1-like) family protein plasma membrane [GO:0005886]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; triglyceride biosynthetic process [GO:0019432],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; triglyceride biosynthetic process [GO:0019432],diacylglycerol O-acyltransferase activity [GO:0004144]; glycerolipid biosynthetic process [GO:0045017],integral component of membrane [GO:0016021]; diacylglycerol O-acyltransferase activity [GO:0004144]; glycerolipid biosynthetic process [GO:0045017] locus:2171372;,locus:505006610;,locus:2171152;,locus:2154282; AT5G16350,AT5G12420,AT5G22490,AT5G53380 Pfam:UPF0089 NA NA NA NA NA NA NA ENOG411EC4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Raffinose synthase or seed imbibition protein Sip1 NA NA NA NA NA NA NA ENOG411EC4Q Q8GX63,A8MR06,F4JKY3 Q8GX63_ARATH,A8MR06_ARATH,F4JKY3_ARATH Alpha/beta-Hydrolases superfamily protein (At4g15960) (Putative epoxide hydrolase),Alpha/beta-Hydrolases superfamily protein ARA:AT4G15955-MONOMER; R-ATH-2142670; 19973,20640,34752 Alpha/beta-Hydrolases superfamily protein (At4g15960) (Putative epoxide hydrolase),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:1005716317; AT4G15955 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EC4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: ZnF_PMZ NA NA NA NA NA NA NA ENOG411EC4S Q9FZ52 FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 51649 F-box/FBD/LRR-repeat protein At1g16930 locus:2015681; AT1G16930 Inherit from euNOG: containing protein NA NA NA NA NA NA NA ENOG411EC4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Platelet-activating factor acetylhydrolase NA NA NA NA NA NA NA ENOG411EC4V Q9SH71 Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 65331 Putative inactive receptor-like protein kinase At1g64210 integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2024517; AT1G64210 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EC4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411EC4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EC4Y Q8RXM3,Q9SRW4 Q8RXM3_ARATH,Q9SRW4_ARATH Transmembrane protein (Uncharacterized protein At3g03870),F20H23.8 protein (Transmembrane protein) 25972,29434 Transmembrane protein (Uncharacterized protein At3g03870),F20H23.8 protein (Transmembrane protein) integral component of membrane [GO:0016021] locus:2079424; AT3G03870 NA NA NA NA NA NA NA NA ENOG411EC4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EFCN Q9SV19 Q9SV19_ARATH Major centromere autoantigen B-like protein (Uncharacterized protein AT4g31510) (Uncharacterized protein F3L17.80) 24001 Major centromere autoantigen B-like protein (Uncharacterized protein AT4g31510) (Uncharacterized protein F3L17.80) locus:2125269; AT4G31510 Inherit from KOG: Rna binding protein NA NA NA NA NA NA NA ENOG411EFCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFCB Q1PFS7,O48692,B2GVM8,Q9ZUB5,Q8LCT6,O48689,Q9FZK9,O04571,F4HR64,F4HR62 Y1406_ARATH,O48692_ARATH,B2GVM8_ARATH,Q9ZUB5_ARATH,Q8LCT6_ARATH,O48689_ARATH,Q9FZK9_ARATH,O04571_ARATH,F4HR64_ARATH,F4HR62_ARATH Uncharacterized protein At1g24060,F3I6.18 protein (Paired amphipathic helix (PAH2) superfamily protein),At1g24230 (Paired amphipathic helix (PAH2) superfamily protein),F5O8.36 (Paired amphipathic helix (PAH2) superfamily protein),At1g24210 (Paired amphipathic helix (PAH2) superfamily protein),F3I6.15 protein (Paired amphipathic helix repeat-containing protein),F17L21.5 (Paired amphipathic helix (PAH2) superfamily protein),F17L21.3 (Paired amphipathic helix (PAH2) superfamily protein) (T7N9.32),Paired amphipathic helix (PAH2) superfamily protein 12229,27808,27793,26859,17918,85705,27104,22006,26374,25373 Uncharacterized protein At1g24060,F3I6.18 protein (Paired amphipathic helix (PAH2) superfamily protein),At1g24230 (Paired amphipathic helix (PAH2) superfamily protein),F5O8.36 (Paired amphipathic helix (PAH2) superfamily protein),At1g24210 (Paired amphipathic helix (PAH2) superfamily protein),F3I6.15 protein (Paired amphipathic helix repeat-containing protein),F17L21.5 (Paired amphipathic helix (PAH2) superfamily protein),F17L21.3 (Paired amphipathic helix (PAH2) superfamily protein) (T7N9.32),Paired amphipathic helix (PAH2) superfamily protein chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122] locus:2032362;,locus:2032442;,locus:2034860;,locus:2032422;,locus:2032427;,locus:2015899;,locus:2015949;,locus:2015919;,locus:2015994; AT1G24060,AT1G24250,AT1G24230,AT1G23810,AT1G24210,AT1G24220,AT1G27270,AT1G27240,AT1G27280,AT1G27260 Paired amphipathic helix repeat NA NA NA NA NA NA NA ENOG411EFCD Q9T022 Q9T022_ARATH Dehydrin family protein (Uncharacterized protein AT4g39130) (Uncharacterized protein T22F8.30) 16260 Dehydrin family protein (Uncharacterized protein AT4g39130) (Uncharacterized protein T22F8.30) cytosol [GO:0005829]; cold acclimation [GO:0009631]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] locus:2136353; AT4G39130 Dehydrin NA NA NA NA NA NA NA ENOG411E999 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E998 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like NA NA NA NA NA NA NA ENOG411E995 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E994 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NA NA NA NA NA NA NA ENOG411E997 T10D17_20 Q9C569,Q9C572,Q9C571,Q9C573,Q9LXM5,A0A1P8BGM2,F4J1W7 Q9C569_ARATH,Q9C572_ARATH,Q9C571_ARATH,Q9C573_ARATH,Q9LXM5_ARATH,A0A1P8BGM2_ARATH,F4J1W7_ARATH Uncharacterized protein At5g22190,Transmembrane protein (Uncharacterized protein At5g22160),Transmembrane protein (Uncharacterized protein At5g22170),Transmembrane protein (Uncharacterized protein At5g22150),Transmembrane protein (Uncharacterized protein T10D17_20),Transmembrane protein 13072,38961,19739,36424,22652,35034,22372 Uncharacterized protein At5g22190,Transmembrane protein (Uncharacterized protein At5g22160),Transmembrane protein (Uncharacterized protein At5g22170),Transmembrane protein (Uncharacterized protein At5g22150),Transmembrane protein (Uncharacterized protein T10D17_20),Transmembrane protein integral component of membrane [GO:0016021] locus:504956453;,locus:504956446;,locus:504956448;,locus:504956444;,locus:2095695;,locus:504955732; AT5G22190,AT5G22160,AT5G22170,AT5G22150,AT3G44230,AT3G44235 NA NA NA NA NA NA NA NA ENOG411E996 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter Os01g0342700 protein A0A0P0V201 A0A0P0V201_ORYSJ Os01g0342700 OSNPB_010342700 ENOG411E991 MDK4.18,MDK4.16 Q9FL64,Q9FL66,F4K5Q7 Q9FL64_ARATH,Q9FL66_ARATH,F4K5Q7_ARATH C2H2-like zinc finger protein,C2H2 and C2HC zinc fingers superfamily protein (C2H2-type zinc finger protein) (Uncharacterized protein At5g54340),C2H2 and C2HC zinc fingers superfamily protein 30021,26688,30935 C2H2-like zinc finger protein,C2H2 and C2HC zinc fingers superfamily protein (C2H2-type zinc finger protein) (Uncharacterized protein At5g54340),C2H2 and C2HC zinc fingers superfamily protein nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355] locus:2162545;,locus:2162610;,locus:2143300; AT5G54360,AT5G54340,AT5G27880 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EFCZ F18K10.20 Q9LPN9 Q9LPN9_ARATH At3g10595 (Duplicated homeodomain-like superfamily protein) (I-box binding factor, putative) 21049 At3g10595 (Duplicated homeodomain-like superfamily protein) (I-box binding factor, putative) nucleus [GO:0005634]; DNA binding [GO:0003677] locus:504955890; AT3G10595 Myb family transcription NA NA NA NA NA NA NA ENOG411E993 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411E992 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Tyrosyl-trna synthetase NA NA NA NA NA NA NA ENOG411E99Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E99Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0280500 protein A0A0P0W863 A0A0P0W863_ORYSJ Os04g0280500 OSNPB_040280500 ENOG411E99U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0358700 protein Q0JMU8 Q0JMU8_ORYSJ Os01g0358700 Os01g0358700 OSNPB_010358700 ENOG411E99T CDT1B Q9M1S9 CDT1B_ARATH CDT1-like protein b (AtCDT1b) FUNCTION: Member of the pre-replication complex. Regulates endoreduplication. Involved in the coordination of cell and plastid division. {ECO:0000269|PubMed:15928083}. 55019 CDT1-like protein b (AtCDT1b) cytoplasm [GO:0005737]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; DNA polymerase binding [GO:0070182]; cell cycle [GO:0007049]; chloroplast organization [GO:0009658]; chromosome organization [GO:0051276]; DNA replication [GO:0006260]; DNA replication checkpoint [GO:0000076]; gametophyte development [GO:0048229] TISSUE SPECIFICITY: Expressed in proliferating (e.g. shoot and root apical meristems, organ primordia, guard cells and stomatal lineage) and endoreplicating cells (e.g. developing trichomes). {ECO:0000269|PubMed:15316110}. locus:2102460; AT3G54710 atcdt1b cdt1b cdt1 cdt1b (arabidopsis homolog of yeast cdt1 barabidopsis homolog of yeast cdt1 b) NA NA NA NA NA NA NA ENOG411E99P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHB Os01g0588400 protein (Putative hypersensitive-induced response protein) (cDNA clone:002-126-G10, full insert sequence) Q8S1F0 Q8S1F0_ORYSJ Os01g0588400 OsJ_02406 OSNPB_010588400 P0700A11.24 ENOG411E99S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E99R LEAF AND FLOWER RELATED C0LGD9,C0LGT5,A0A1P8BFJ0 Y1756_ARATH,Y5169_ARATH,A0A1P8BFJ0_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07560 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At5g16900 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 96926,97252,72138 Probable LRR receptor-like serine/threonine-protein kinase At1g07560 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At5g16900 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2024972;,locus:2148151; AT1G07560,AT5G16900 STYKc NA NA NA NA NA NA NA ENOG411E99M GLR2.5 Q9LFN5,A0A1P8BGA4,M4GWA7,A0A1P8BGB4,A0A1P8BG81,A0A1P8BG88,A0A1P8BGA1,A0A1P8BGA6 GLR25_ARATH,A0A1P8BGA4_ARATH,M4GWA7_ARATH,A0A1P8BGB4_ARATH,A0A1P8BG81_ARATH,A0A1P8BG88_ARATH,A0A1P8BGA1_ARATH,A0A1P8BGA6_ARATH Glutamate receptor 2.5 (Ligand-gated ion channel 2.5),Glutamate receptor,Glutamate receptor 2.5 (Glutamate receptor-like protein splice variant C),Glutamate receptor 2.5 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 103541,90668,46541,81613,80982,82376,90037,94487 Glutamate receptor 2.5 (Ligand-gated ion channel 2.5),Glutamate receptor,Glutamate receptor 2.5 (Glutamate receptor-like protein splice variant C),Glutamate receptor 2.5 integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; G-protein coupled receptor activity [GO:0004930]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; G-protein coupled receptor activity [GO:0004930]; ionotropic glutamate receptor activity [GO:0004970],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots. {ECO:0000269|PubMed:12082126}. AT5G11210 Glutamate-gated receptor that probably acts as non- selective cation channel NA NA NA NA NA NA NA ENOG411E99G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E99F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA source UniProtKB NA NA NA NA NA NA NA ENOG411E99A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E99C ALC Q9FHA2 ALC_ARATH Transcription factor ALC (Basic helix-loop-helix protein 73) (AtbHLH73) (bHLH 73) (Protein ALCATRAZ) (Transcription factor EN 98) (bHLH transcription factor bHLH073) FUNCTION: Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}. 22963 Transcription factor ALC (Basic helix-loop-helix protein 73) (AtbHLH73) (bHLH 73) (Protein ALCATRAZ) (Transcription factor EN 98) (bHLH transcription factor bHLH073) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; fruit dehiscence [GO:0010047]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. Confined to the valve margins of the silique. {ECO:0000269|PubMed:11747817, ECO:0000269|PubMed:12679534}. locus:2155503; AT5G67110 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E99B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain NA NA NA NA NA NA NA ENOG411EFCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase small domain NA NA NA NA NA NA NA ENOG411EFCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0467600 protein B9FKN7 B9FKN7_ORYSJ Os05g0467600 OsJ_18857 OSNPB_050467600 ENOG411EM65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Retrotransposon NA NA NA NA NA NA NA ENOG411DUMR AHL Q38945 DPNPH_ARATH PAP-specific phosphatase HAL2-like (3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) (Halotolerance protein) FUNCTION: Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP. May regulate the flux of sulfur in the sulfur-activation pathway by converting PAPS to APS (By similarity). Prevents both the toxicity of PAP on RNA processing enzymes as well as the product inhibition by PAP of sulfate conjugation. {ECO:0000250, ECO:0000269|PubMed:10205895}. MISCELLANEOUS: Substrate preference is 3'-phosphoadenosine 5'-phosphate (PAP) > adenosine 3'-phosphate 5'-phosphosulfate (PAPS). No activity observed against 3' or 5'-AMP, inositol mono and diphosphates and fructose-1,6-bisphosphate. ARA:AT5G54390-MONOMER; 3.1.3.7; 3.1.3.7 39374 PAP-specific phosphatase HAL2-like (3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) (Halotolerance protein) 3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; metal ion binding [GO:0046872]; phosphatidylinositol phosphorylation [GO:0046854]; sulfur compound metabolic process [GO:0006790] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. locus:2147279; AT5G54390 PAP-specific phosphatase HAL2-like Os02g0805500 protein (Fragment) Q0DWN3 Q0DWN3_ORYSJ Os02g0805500 Os02g0805500 OSNPB_020805500 ENOG411DUMS F18B3.70 Q9SVL9 Q9SVL9_ARATH Esterase/lipase/thioesterase family protein (Putative LEA protein) ARA:AT3G50790-MONOMER; 45170 Esterase/lipase/thioesterase family protein (Putative LEA protein) acylglycerol lipase activity [GO:0047372]; short-chain carboxylesterase activity [GO:0034338]; medium-chain fatty acid biosynthetic process [GO:0051792]; medium-chain fatty acid catabolic process [GO:0051793] locus:2077937; AT3G50790 embryogenesis-associated protein EMB8-like Os02g0649400 protein (Fragment) A0A0P0VMB0 A0A0P0VMB0_ORYSJ Os02g0649400 OSNPB_020649400 ENOG411DUMP Q9C7J8,A0A1P8AMT7,F4I3L9,A0A1P8AMU5 Q9C7J8_ARATH,A0A1P8AMT7_ARATH,F4I3L9_ARATH,A0A1P8AMU5_ARATH Enolase (DUF1399) (Uncharacterized protein At1g56230) (Uncharacterized protein F14G9.16),Enolase (DUF1399) 86021,62438,84823,69792 Enolase (DUF1399) (Uncharacterized protein At1g56230) (Uncharacterized protein F14G9.16),Enolase (DUF1399) plasma membrane [GO:0005886] locus:2011821; AT1G56230 Protein of unknown function (DUF1399) Os01g0347100 protein (cDNA clone:J023115O05, full insert sequence) Q5Z8D9 Q5Z8D9_ORYSJ Os01g0347100 B1146B04.38 OSNPB_010347100 P0440D10.6 ENOG411DUMQ PME19,PME42,PME30,PME57,PME18,PMEPCRA Q84JX1,Q1PEC0,Q3EAY9,Q9MAL0,Q1JPL7,A0A1P8ARX5 PME19_ARATH,PME42_ARATH,PME30_ARATH,PME57_ARATH,PME18_ARATH,A0A1P8ARX5_ARATH Probable pectinesterase/pectinesterase inhibitor 19 [Includes: Pectinesterase inhibitor 19 (Pectin methylesterase inhibitor 19); Pectinesterase 19 (PE 19) (EC 3.1.1.11) (Pectin methylesterase 19) (AtPME19) (Pectin methylesterase 5) (AtPME5)],Probable pectinesterase/pectinesterase inhibitor 42 [Includes: Pectinesterase inhibitor 42 (Pectin methylesterase inhibitor 42); Pectinesterase 42 (PE 42) (EC 3.1.1.11) (Pectin methylesterase 42) (AtPME42)],Probable pectinesterase 30 (PE 30) (EC 3.1.1.11) (Pectin methylesterase 30) (AtPME30),Putative pectinesterase 57 (PE 57) (EC 3.1.1.11) (Pectin methylesterase 57) (AtPME57),Pectinesterase/pectinesterase inhibitor 18 (AtPMEpcrA) [Cleaved into: Pectinesterase inhibitor 18 (Pectin methylesterase inhibitor 18); Bifunctional pectinesterase 18/rRNA N-glycosylase (PE 18) (EC 3.1.1.11) (EC 3.2.2.22) (Pectin methylesterase 18) (Pectin methylesterase 4) (AtPME4) (Ribosome-inactivating protein)],Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}.,FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. Inhibits the elongation phase of protein synthesis. {ECO:0000269|PubMed:18222123}.,FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589, ECO:0000256|SAAS:SAAS00560367}. ARA:AT1G11590-MONOMER;,ARA:AT4G03930-MONOMER;,ARA:AT3G27980-MONOMER;,ARA:AT1G44980-MONOMER;,ARA:AT1G11580-MONOMER; 3.1.1.11,3.1.1.11; 3.2.2.22 58692,58591,55459,27743,61687,64065 Probable pectinesterase/pectinesterase inhibitor 19 [Includes: Pectinesterase inhibitor 19 (Pectin methylesterase inhibitor 19); Pectinesterase 19 (PE 19) (EC 3.1.1.11) (Pectin methylesterase 19) (AtPME19) (Pectin methylesterase 5) (AtPME5)],Probable pectinesterase/pectinesterase inhibitor 42 [Includes: Pectinesterase inhibitor 42 (Pectin methylesterase inhibitor 42); Pectinesterase 42 (PE 42) (EC 3.1.1.11) (Pectin methylesterase 42) (AtPME42)],Probable pectinesterase 30 (PE 30) (EC 3.1.1.11) (Pectin methylesterase 30) (AtPME30),Putative pectinesterase 57 (PE 57) (EC 3.1.1.11) (Pectin methylesterase 57) (AtPME57),Pectinesterase/pectinesterase inhibitor 18 (AtPMEpcrA) [Cleaved into: Pectinesterase inhibitor 18 (Pectin methylesterase inhibitor 18); Bifunctional pectinesterase 18/rRNA N-glycosylase (PE 18) (EC 3.1.1.11) (EC 3.2.2.22) (Pectin methylesterase 18) (Pectin methylesterase 4) (AtPME4) (Ribosome-inactivating protein)],Pectinesterase (EC 3.1.1.11) cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; cytosol [GO:0005829]; extracellular region [GO:0005576]; vacuolar membrane [GO:0005774]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; rRNA N-glycosylase activity [GO:0030598]; cell wall modification [GO:0042545]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640]; negative regulation of translation [GO:0017148]; pectin catabolic process [GO:0045490]; response to bacterium [GO:0009617],cell wall [GO:0005618]; extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; aspartyl esterase activity [GO:0045330]; enzyme inhibitor activity [GO:0004857]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expression restricted to early to mid-stage of silique development. Not found in vegetative stage. Expressed in the micropyle area of the ovule just after fertilization. {ECO:0000269|PubMed:16622707}.,DEVELOPMENTAL STAGE: Expression restricted to early to mid-stage of silique development. {ECO:0000269|PubMed:16622707}.,DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}.,DEVELOPMENTAL STAGE: Expressed during early seed development and late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques, but not in flower buds. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in siliques but not in flower buds. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in siliques, flowers, floral stems, rosette leaves and roots. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:9767082}. locus:2200121;,locus:2136703;,locus:2086854;,locus:2028250;,locus:2200076; AT1G11590,AT4G03930,AT3G27980,AT1G44980,AT1G11580 pectinesterase Pectinesterase (EC 3.1.1.11) Q5ZAW1 Q5ZAW1_ORYSJ Os01g0788400 Os01g0788400 OsJ_03720 OSNPB_010788400 P0415A04.41 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. ENOG411DUMV RAY1 F4I6V0,A0A1P8ASV0,A0A1P8ASW3,A0A1P8AT04,A0A1P8ASZ1,A0A1P8ASW5 RAY1_ARATH,A0A1P8ASV0_ARATH,A0A1P8ASW3_ARATH,A0A1P8AT04_ARATH,A0A1P8ASZ1_ARATH,A0A1P8ASW5_ARATH Beta-arabinofuranosyltransferase RAY1 (EC 2.4.2.-) (Protein REDUCED ARABINOSE YARIV 1),Nucleotide-diphospho-sugar transferase family protein,Glycosyltransferase (EC 2.4.2.-) DISRUPTION PHENOTYPE: Reduced growth of primary root. Delayed flowering. {ECO:0000269|PubMed:23396039}. FUNCTION: Beta-arabinofuranosyltransferase that transfers specifically an arabinosyl residue from UDP-arabinofuranose to the monosaccharide galactose or beta-methyl-galactoside in vitro. Catalyzes the addition of a beta-arabinofuranose residue onto a beta-galactosyl residue of an Yariv-precipitable wall polymer in vivo. {ECO:0000269|PubMed:23396039}. 2.4.2.- 61922,86463,76935,85258,82873,58332 Beta-arabinofuranosyltransferase RAY1 (EC 2.4.2.-) (Protein REDUCED ARABINOSE YARIV 1),Nucleotide-diphospho-sugar transferase family protein,Glycosyltransferase (EC 2.4.2.-) Golgi apparatus [GO:0005794]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555],integral component of membrane [GO:0016021]; transferase activity [GO:0016740],transferase activity [GO:0016740],Golgi membrane [GO:0000139]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2026831; AT1G70630 Nucleotide-diphospho-sugar transferase Os05g0513700 protein A0A0P0WPL2 A0A0P0WPL2_ORYSJ Os05g0513700 OSNPB_050513700 ENOG411DUMW RFC2 Q9CAM7 RFC2_ARATH Replication factor C subunit 2 (AtRFC2) (Activator 1 subunit 2) (Protein EMBRYO DEFECTIVE 2811) Embryo defective; Preglobular-D. Meinke-2009 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174411;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091; 36747 Replication factor C subunit 2 (AtRFC2) (Activator 1 subunit 2) (Protein EMBRYO DEFECTIVE 2811) DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261] locus:2015233; AT1G63160 replication factor C Replication factor C subunit 4 (OsRFC4) (Activator 1 subunit 4),Os04g0569000 protein Q7XRX1,A0A0P0WDN8 RFC4_ORYSJ,A0A0P0WDN8_ORYSJ RFC4 Os04g0569000 LOC_Os04g48060 OSJNBb0032E06.6,Os04g0569000 OSNPB_040569000 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. ENOG411DUMT TBL21,TBL19 Q9LFT1,Q9LFT0,A0A1P8BFJ2 TBL21_ARATH,TBL19_ARATH,A0A1P8BFJ2_ARATH Protein trichome birefringence-like 21,Protein trichome birefringence-like 19,TRICHOME BIREFRINGENCE-LIKE 19 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 59866,49527,51546 Protein trichome birefringence-like 21,Protein trichome birefringence-like 19,TRICHOME BIREFRINGENCE-LIKE 19 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2146062;,locus:2146077; AT5G15890,AT5G15900 Pfam:DUF231 Leaf senescence protein-like (Os01g0652800 protein) (cDNA clone:001-018-G10, full insert sequence) (cDNA clone:006-208-D04, full insert sequence),Os01g0652800 protein Q8RV74,Q5VPB1 Q8RV74_ORYSJ,Q5VPB1_ORYSJ Os01g0652800 OsJ_02847 OSJNBb0006H05.2-1 OSJNBb0032K15.21-1 OSNPB_010652800,Os01g0652800 OSJNBb0006H05.2-2 OSJNBb0032K15.21-2 OSNPB_010652800 ENOG411DUMU O22248,A0A1P8AXU7,A0A1P8AY05,A0A1I9LSE1,F4IZK0 O22248_ARATH,A0A1P8AXU7_ARATH,A0A1P8AY05_ARATH,A0A1I9LSE1_ARATH,F4IZK0_ARATH Alpha/beta-Hydrolases superfamily protein (At2g47630/F17A22.2) (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein ARA:AT2G47630-MONOMER; 39709,34542,36798,34019,39179 Alpha/beta-Hydrolases superfamily protein (At2g47630/F17A22.2) (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein plasma membrane [GO:0005886]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629],hydrolase activity [GO:0016787],cytosol [GO:0005829]; plasma membrane [GO:0005886]; lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] locus:2043278;,locus:2081710; AT2G47630,AT3G62860 Esterase lipase thioesterase family protein Os01g0315600 protein (cDNA clone:002-171-C06, full insert sequence),Os05g0363100 protein,Os01g0315700 protein (Fragment) Q0JN90,A0A0P0WLL3,A0A0N7KCU7 Q0JN90_ORYSJ,A0A0P0WLL3_ORYSJ,A0A0N7KCU7_ORYSJ Os01g0315600 Os01g0315600 OSNPB_010315600,Os05g0363100 OSNPB_050363100,Os01g0315700 OSNPB_010315700 ENOG411DUMZ ENGASE1,ENGASE2,ENGase85B F4JZC2,Q9SRL4,F4JD24,A0A1I9LSS7,A0A1I9LSS8,F4JD23 ENAS1_ARATH,ENAS2_ARATH,F4JD24_ARATH,A0A1I9LSS7_ARATH,A0A1I9LSS8_ARATH,F4JD23_ARATH Cytosolic endo-beta-N-acetylglucosaminidase 1 (ENGase 1) (EC 3.2.1.96) (Endo-beta-N-acetyglucosaminidase 85A) (AtENGase85A),Cytosolic endo-beta-N-acetylglucosaminidase 2 (ENGase 2) (EC 3.2.1.96) (Endo-beta-N-acetyglucosaminidase 85B) (AtENGase85B),Ferritin (EC 1.16.3.1),Glycosyl hydrolase family 85,Ferritin/ribonucleotide reductase-like family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants engase85A and engase85B accumulate very high level of free N-glycans carrying two GlcNAc at the reducing end, but their counterparts with a single GlcNAc are completely absent. {ECO:0000269|PubMed:21597164, ECO:0000269|PubMed:21796445}. FUNCTION: Endoglycosidase that releases N-glycans from glycoproteins by cleaving the beta-1,4-glycosidic bond in the N,N'-diacetylchitobiose core. Involved in the production of high-mannose type N-glycans during plant development and fruit maturation. {ECO:0000269|PubMed:21597164, ECO:0000269|PubMed:21796445}.,FUNCTION: Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. {ECO:0000256|RuleBase:RU361145}. ARA:AT3G11040-MONOMER; R-ATH-532668; 3.2.1.96,1.16.3.1 76351,79325,48905,81065,83774,38594 Cytosolic endo-beta-N-acetylglucosaminidase 1 (ENGase 1) (EC 3.2.1.96) (Endo-beta-N-acetyglucosaminidase 85A) (AtENGase85A),Cytosolic endo-beta-N-acetylglucosaminidase 2 (ENGase 2) (EC 3.2.1.96) (Endo-beta-N-acetyglucosaminidase 85B) (AtENGase85B),Ferritin (EC 1.16.3.1),Glycosyl hydrolase family 85,Ferritin/ribonucleotide reductase-like family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; vacuole [GO:0005773]; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity [GO:0033925]; N-glycan processing [GO:0006491]; protein deglycosylation [GO:0006517],cytoplasm [GO:0005737]; cytosol [GO:0005829]; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity [GO:0033925]; N-glycan processing [GO:0006491]; protein deglycosylation [GO:0006517],cytoplasm [GO:0005737]; ferric iron binding [GO:0008199]; ferroxidase activity [GO:0004322]; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity [GO:0033925]; cellular iron ion homeostasis [GO:0006879]; iron ion transport [GO:0006826],cytoplasm [GO:0005737]; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity [GO:0033925],cytoplasm [GO:0005737]; ferric iron binding [GO:0008199]; iron ion binding [GO:0005506]; intracellular sequestering of iron ion [GO:0006880]; iron ion transport [GO:0006826] locus:2153579;,locus:2074598;,locus:2100952; AT5G05460,AT3G11040,AT3G61010 cytosolic endo-beta-N-acetylglucosaminidase-like Os05g0346500 protein (Fragment) A0A0P0WKZ6 A0A0P0WKZ6_ORYSJ Os05g0346500 OSNPB_050346500 ENOG411DUMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein Os02g0787200 protein (Putative serine threonine kinase),Os06g0191900 protein Q6K4Q1,A0A0P0WTL2 Q6K4Q1_ORYSJ,A0A0P0WTL2_ORYSJ Os02g0787200 Os02g0787200 OJ1316_E06.22 OSJNBa0054K20.8 OSNPB_020787200,Os06g0191900 OSNPB_060191900 ENOG411DUMY VIP2,Negative on TATA less2a Q9FPW4,Q0WP31,A0A1P8B9E0,A8MR45 VIP2_ARATH,Q0WP31_ARATH,A0A1P8B9E0_ARATH,A8MR45_ARATH Probable NOT transcription complex subunit VIP2 (Protein VIRE2 INTERACTING PROTEIN2) (AtVIP2),NOT2 / NOT3 / NOT5 family (Uncharacterized protein At1g07705),VIRE2 interacting protein 2,NOT2 / NOT3 / NOT5 family DISRUPTION PHENOTYPE: Impaired stable genetic transformation by Agrobacterium T-DNA. {ECO:0000269|PubMed:17496122}. In transient root transformation assays with the oncogenic strain Agrobacterium tumefaciens A208 plants produce fewer tumors compared with wild-type plants. In stable transformation assays significantly reduced numbers of resistant (transformed) calli where observed in mutant plants vs. wild type ones. Few root tumors in response to Agrobacterium infection-K. Mysore-2007 FUNCTION: Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression. {ECO:0000269|PubMed:17496122}. 66233,57406,58856,65817 Probable NOT transcription complex subunit VIP2 (Protein VIRE2 INTERACTING PROTEIN2) (AtVIP2),NOT2 / NOT3 / NOT5 family (Uncharacterized protein At1g07705),VIRE2 interacting protein 2,NOT2 / NOT3 / NOT5 family CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; mRNA binding [GO:0003729]; DNA integration [GO:0015074]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355],CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]; regulation of transcription, DNA-templated [GO:0006355] locus:2174259;,locus:505006107; AT5G59710,AT1G07705 transcription complex subunit NOT2/NOT3/NOT5 family protein, expressed (Os03g0736000 protein) (cDNA clone:002-127-D03, full insert sequence),Os02g0782200 protein (Putative CCR4-NOT transcription complex, subunit 2 NOT2),Os03g0736000 protein,Os02g0782200 protein (Fragment),Os05g0486300 protein (Fragment) Q10D97,Q6K7F1,A0A0P0W2Q3,A0A0P0VQF5,A0A0P0VQD2,A0A0P0WNS9 Q10D97_ORYSJ,Q6K7F1_ORYSJ,A0A0P0W2Q3_ORYSJ,A0A0P0VQF5_ORYSJ,A0A0P0VQD2_ORYSJ,A0A0P0WNS9_ORYSJ Os03g0736000 LOC_Os03g52594 OSNPB_030736000,Os02g0782200 Os02g0782200 OJ1311_D08.1 OJ1369_G08.17 OsJ_08620 OSNPB_020782200,Os03g0736000 OSNPB_030736000,Os02g0782200 OSNPB_020782200,Os05g0486300 OSNPB_050486300 ENOG411DUMB APO4 Q9LSZ0 APO4_ARATH APO protein 4, mitochondrial FUNCTION: May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria. {ECO:0000305}. 38544 APO protein 4, mitochondrial mitochondrion [GO:0005739]; RNA binding [GO:0003723] locus:2093069; AT3G21740 APO protein 4 Os04g0628000 protein (cDNA clone:002-111-G08, full insert sequence) Q0J9W7 Q0J9W7_ORYSJ Os04g0628000 Os04g0628000 OsJ_16258 OSNPB_040628000 ENOG411DUMC Q9LN35 Q9LN35_ARATH At1g19600 (F14P1.7 protein) (F18O14.35) (PfkB-like carbohydrate kinase family protein) (Putative ribokinase) 37842 At1g19600 (F14P1.7 protein) (F18O14.35) (PfkB-like carbohydrate kinase family protein) (Putative ribokinase) kinase activity [GO:0016301] locus:2013094; AT1G19600 PfkB-type carbohydrate kinase family protein Carbohydrate kinase-like (Os01g0105900 protein) Q657Z1 Q657Z1_ORYSJ Os01g0105900 OsJ_00045 OSNPB_010105900 P0005A05.12 ENOG411DUMA Q9LM16,F4I1A5 Q9LM16_ARATH,F4I1A5_ARATH Endoplasmic reticulum vesicle transporter protein (F16L1.7 protein) (Uncharacterized protein At1g22200),Endoplasmic reticulum vesicle transporter protein 43798,38334 Endoplasmic reticulum vesicle transporter protein (F16L1.7 protein) (Uncharacterized protein At1g22200),Endoplasmic reticulum vesicle transporter protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2015056; AT1G22200 Endoplasmic reticulum-Golgi intermediate compartment protein Os04g0455900 protein,Os03g0321400 protein (Fragment),Os04g0455900 protein (Fragment) Q0JCQ8,Q0DSB4,A0A0P0WBA0 Q0JCQ8_ORYSJ,Q0DSB4_ORYSJ,A0A0P0WBA0_ORYSJ Os04g0455900 Os04g0455900 OSNPB_040455900,Os03g0321400 Os03g0321400 OSNPB_030321400,Os04g0455900 OSNPB_040455900 ENOG411DUMF DIR25,DIR10 Q9LQQ0,Q9SIA8 DIR25_ARATH,DIR10_ARATH Dirigent protein 25 (AtDIR25),Dirigent protein 10 (AtDIR10) (Protein ENHANCED SUBERIN 1) DISRUPTION PHENOTYPE: Increased root suberin accumulation characterized by an increased aliphatic monomer content in suberin. Reduced day time transpiration rates and increased water-use efficiency during the vegetative growth period. Decreases in the accumulation of Ca, Mn, and Zn and increases in the accumulation of Na, S, K, As, Se, and Mo in the shoot. {ECO:0000269|PubMed:19461889, ECO:0000269|PubMed:21421706}. Resistant to drought; Elevated suberin levels in roots-D. Salt-2009 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}.,FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism (By similarity). Regulates suberin accumulation in roots. {ECO:0000250, ECO:0000269|PubMed:19461889, ECO:0000269|PubMed:21421706}. 38336,41507 Dirigent protein 25 (AtDIR25),Dirigent protein 10 (AtDIR10) (Protein ENHANCED SUBERIN 1) apoplast [GO:0048046]; isomerase activity [GO:0016853],apoplast [GO:0048046]; Casparian strip [GO:0048226]; isomerase activity [GO:0016853]; lignin biosynthetic process [GO:0009809]; suberin biosynthetic process [GO:0010345] DEVELOPMENTAL STAGE: In flowers, localized to vasculature of the stamen filament, in anthers and papillar cells of the stigma. In siliques, mostly expressed in the abscission zone. {ECO:0000269|PubMed:22854967}. TISSUE SPECIFICITY: In roots, mostly detected in root endodermis and quiescent center, and, to a lower extent, in root stele and cortex. Expressed in root vascular cylinder, flowers, siliques, cotyledon and leaf veins, and leaf margins. Present in the basal region of rosette leaf trichomes and in developing xylem. {ECO:0000269|PubMed:22854967}. locus:1006589878;,locus:2065521; AT1G07730,AT2G28670 Dirigent-like protein Dirigent protein Q943Q0 Q943Q0_ORYSJ P0011G08.16 Os01g0155300 OSNPB_010155300 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411DUMG PCMP-E33 O80647 PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620 92672 Pentatricopeptide repeat-containing protein At2g39620 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mRNA modification [GO:0016556] locus:2039817; AT2G39620 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DUMD ASG2,ALTERED SEED GERMINATION 2 Q94BQ3,Q9LEU6 Q94BQ3_ARATH,Q9LEU6_ARATH Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At5g10940),Transducin family protein / WD-40 repeat family protein (Uncharacterized protein T30N20_210) R-ATH-8951664; 83830,83527 Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At5g10940),Transducin family protein / WD-40 repeat family protein (Uncharacterized protein T30N20_210) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2183735; AT5G10940 WD and tetratricopeptide repeats protein Os03g0187300 protein A0A0P0VU05 A0A0P0VU05_ORYSJ Os03g0187300 OSNPB_030187300 ENOG411DUME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endotransglucosylase hydrolase protein Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Q5Z6H0 Q5Z6H0_ORYSJ Os06g0696600 Os06g0696600 OsJ_22493 OSNPB_060696600 P0028E05.20 P0622F03.46 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DUMJ AAK6 Q9FJI1 KAD6_ARATH Adenylate kinase isoenzyme 6 homolog (AK6) (EC 2.7.4.3) (Dual activity adenylate kinase/ATPase) (AK/ATPase) DISRUPTION PHENOTYPE: Decreased stem growth. {ECO:0000269|PubMed:23121860}. Main stem length is mutants is significantly shorter than wt. Cells of the stem are shorter. FUNCTION: Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Preferred phosphate donor and acceptor are ATP and AMP, respectively. Has also ATPase activity (By similarity). {ECO:0000250, ECO:0000269|PubMed:23121860}. ARA:AT5G60340-MONOMER; R-ATH-499943; 2.7.4.3 20444 Adenylate kinase isoenzyme 6 homolog (AK6) (EC 2.7.4.3) (Dual activity adenylate kinase/ATPase) (AK/ATPase) cytoplasm [GO:0005737]; nucleus [GO:0005634]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524]; developmental vegetative growth [GO:0080186]; multicellular organism development [GO:0007275]; nucleotide phosphorylation [GO:0046939]; regulation of growth [GO:0040008]; unidimensional cell growth [GO:0009826] locus:2158299; AT5G60340 Adenylate kinase isoenzyme Adenylate kinase isoenzyme 6 homolog (AK6) (EC 2.7.4.3) (Dual activity adenylate kinase/ATPase) (AK/ATPase) Q7EYP9 Q7EYP9_ORYSJ P0710F09.137 Os07g0412400 OsJ_23948 OSNPB_070412400 FUNCTION: Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. {ECO:0000256|HAMAP-Rule:MF_03173}. ENOG411DUMK TIN1 Q84JN2 Q84JN2_ARATH Tunicamycin induced protein (Uncharacterized protein At5g64510) altered pollen surface morphology 46437 Tunicamycin induced protein (Uncharacterized protein At5g64510) endoplasmic reticulum [GO:0005783] locus:2174749; AT5G64510 NA Os01g0767600 protein (cDNA clone:J023059I06, full insert sequence) Q8LIX4 Q8LIX4_ORYSJ Os01g0767600 Os01g0767600 B1143G03.6 OSJNBb0053G03.20 OSNPB_010767600 ENOG411DUMH Q84WV4 Q84WV4_ARATH Sec23/Sec24 protein transport family protein (Uncharacterized protein At4g01810) 96004 Sec23/Sec24 protein transport family protein (Uncharacterized protein At4g01810) COPII vesicle coat [GO:0030127]; cytosol [GO:0005829]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886] locus:2141340; AT4G01810 transport) protein Os01g0321700 protein (Putative Sec23 protein),Os01g0321700 protein (Fragment) Q657N5,A0A0P0V228 Q657N5_ORYSJ,A0A0P0V228_ORYSJ P0426D06.22-1 Os01g0321700 OSNPB_010321700,Os01g0321700 OSNPB_010321700 ENOG411DUMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os09g0478500 protein (cDNA clone:J023101N17, full insert sequence),Os08g0491200 protein (cDNA clone:J033135F07, full insert sequence) Q651X1,Q6Z8V4 Q651X1_ORYSJ,Q6Z8V4_ORYSJ Os09g0478500 Os09g0478500 OSNPB_090478500 P0463G11.1 P0556A05.38,Os08g0491200 Os08g0491200 OSNPB_080491200 P0605H02.43 P0686H11.3 ENOG411DUMN BLH8 Q9SJJ3,A0A1P8B1P7 BLH8_ARATH,A0A1P8B1P7_ARATH BEL1-like homeodomain protein 8 (BEL1-like protein 8) (Protein POUND-FOOLISH),BEL1-like homeodomain 8 No visible phenotype.,In triple mutants the primary apical meristem terminates after germination-usually being consumed in the formation of a single terminal leaf. Growth can resume with the formation of new meristems however the phyllotaxy is abnormal.,No defects in internode development.,Plants do not flower and continue to produce leaves even after 200 days in long-day inductive conditions. Shoot meristems initiated only leaves. SAMs respond to floral inductive signals but fail to induce floral meristem identity genes. Phyllotaxy in both reproductive and vegetative meristems is altered so that two organs are produced per node vs. the usual one.,Shoot apical meristem terminates prematurely. FUNCTION: Required for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}. 65775,50616 BEL1-like homeodomain protein 8 (BEL1-like protein 8) (Protein POUND-FOOLISH),BEL1-like homeodomain 8 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; inflorescence development [GO:0010229]; internode patterning [GO:0080006]; maintenance of floral meristem identity [GO:0010076]; maintenance of inflorescence meristem identity [GO:0010077]; pattern specification process [GO:0007389]; plant organ formation [GO:1905393]; secondary shoot formation [GO:0010223]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],DNA binding [GO:0003677] locus:2057856; AT2G27990 POX NA NA NA NA NA NA NA ENOG411DUMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glucan endo-1-3-beta-glucosidase Glucan endo-1,3-beta-glucosidase 7, putative, expressed (Glycosyl hydrolases family 17, putative) (Os03g0722500 protein) (cDNA clone:J023004N24, full insert sequence) Q53K23 Q53K23_ORYSJ Os03g0722500 LOC_Os03g51240 Os03g0722500 OSNPB_030722500 ENOG411DUM2 CHLM Q9SW18,A0A1P8B4G1 CHLM_ARATH,A0A1P8B4G1_ARATH Magnesium protoporphyrin IX methyltransferase, chloroplastic (EC 2.1.1.11),Magnesium-protoporphyrin IX methyltransferase DISRUPTION PHENOTYPE: Lethal under normal growth conditions and stunted albino plants unable to produce seeds when grown in presence of sucrose. {ECO:0000269|PubMed:17135235}. During silique maturation of heterozygous plants some white seeds were visible suggesting the absence of chlorophyll in the cotyledons of the homozygous seeds. However after desiccation the seed color heterogeneity was no longer visible.,The homozygous progeny has an albino phenotype and does not produce seeds.,When germinated on MS-agar containing 0.5% sucrose and under medium light (70 μmol of photons m-2 s-1) the homozygous seedlings turned white and stopped growth after cotyledon development. However when the plants were transferred after 5 days in medium light to dim light (5 μmol of photons m-2 s-1) they could develop although very slowly and with a stunted appearance; they then formed small yellow leaves. Seedling lethal; Albino embryos and seedlings-M. Block-2007 FUNCTION: Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor. Involved in chloroplast-to-nucleus signaling by acting as a negative effector of nuclear photosynthetic gene expression. {ECO:0000269|PubMed:11784318, ECO:0000269|PubMed:17135235}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT4G25080-MONOMER;ARA:GQT-425-MONOMER;MetaCyc:AT4G25080-MONOMER; 2.1.1.11 33796,35592 Magnesium protoporphyrin IX methyltransferase, chloroplastic (EC 2.1.1.11),Magnesium-protoporphyrin IX methyltransferase chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; magnesium protoporphyrin IX methyltransferase activity [GO:0046406]; chlorophyll biosynthetic process [GO:0015995],magnesium protoporphyrin IX methyltransferase activity [GO:0046406]; chlorophyll biosynthetic process [GO:0015995] locus:2117388; AT4G25080 magnesium-protoporphyrin Os06g0132400 protein (Fragment) Q0DEV8 Q0DEV8_ORYSJ Os06g0132400 Os06g0132400 OSNPB_060132400 ENOG411DUM3 Q9SKJ7,Q9LFN3,Q3E6T0,Q9SUV2 PT225_ARATH,PT511_ARATH,PT525_ARATH,PT432_ARATH Probable sugar phosphate/phosphate translocator At2g25520,Probable sugar phosphate/phosphate translocator At5g11230,Probable sugar phosphate/phosphate translocator At5g25400,Probable sugar phosphate/phosphate translocator At4g32390 38661,39270,39049,39020 Probable sugar phosphate/phosphate translocator At2g25520,Probable sugar phosphate/phosphate translocator At5g11230,Probable sugar phosphate/phosphate translocator At5g25400,Probable sugar phosphate/phosphate translocator At4g32390 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] locus:2040040;,locus:2147957;,locus:2145487;,locus:2127841; AT2G25520,AT5G11230,AT5G25400,AT4G32390 phosphate NA NA NA NA NA NA NA ENOG411DUM0 UBC32 Q9LSP7 UBC32_ARATH Ubiquitin-conjugating enzyme E2 32 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 32) (Ubiquitin carrier protein 32) FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 34322 Ubiquitin-conjugating enzyme E2 32 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 32) (Ubiquitin carrier protein 32) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; perinuclear region of cytoplasm [GO:0048471]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2086067; AT3G17000 ubiquitin-conjugating enzyme Os03g0308000 protein (Ubiquitinating enzyme, putative, expressed) (cDNA clone:J023083I20, full insert sequence) Q10MI2 Q10MI2_ORYSJ Os03g0308000 LOC_Os03g19500 Os03g0308000 OSNPB_030308000 ENOG411DUM1 Q147I3 Q147I3_ARATH At4g19140 (Exopolysaccharide production negative regulator) 34568 At4g19140 (Exopolysaccharide production negative regulator) integral component of membrane [GO:0016021] locus:2134776; AT4G19140 NA OSJNBa0083N12.13 protein (Os04g0600400 protein) Q7XTR6 Q7XTR6_ORYSJ Os04g0600400 OSJNBa0083N12.13 OSNPB_040600400 ENOG411DUM6 O80897 O80897_ARATH At2g32600/T26B15.16 (Hydroxyproline-rich glycoprotein family protein) (Putative spliceosome associated protein) R-ATH-72163; 31370 At2g32600/T26B15.16 (Hydroxyproline-rich glycoprotein family protein) (Putative spliceosome associated protein) catalytic step 2 spliceosome [GO:0071013]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; spliceosomal complex assembly [GO:0000245] locus:2060279; AT2G32600 splicing factor 3A subunit Os03g0263500 protein (Splicing factor 3A subunit 2, putative, expressed) (cDNA clone:001-206-F12, full insert sequence) Q10NP6 Q10NP6_ORYSJ LOC_Os03g15700 Os03g0263500 OsJ_10232 OSNPB_030263500 ENOG411DUM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter G family member Os09g0472100 protein (Putative ABC transporter),Os09g0472200 protein Q6K4D2,A0A0P0XN42 Q6K4D2_ORYSJ,A0A0P0XN42_ORYSJ Os09g0472100 OJ1509_C06.9 OsJ_29719 OSNPB_090472100,Os09g0472200 OSNPB_090472200 ENOG411DUM4 A0A1P8ASP6,A0A1P8ASJ1,A0A1P8ASK2,A0A1P8ASM6,F4HRW3,F4HRW2 A0A1P8ASP6_ARATH,A0A1P8ASJ1_ARATH,A0A1P8ASK2_ARATH,A0A1P8ASM6_ARATH,F4HRW3_ARATH,F4HRW2_ARATH Zn-dependent exopeptidases superfamily protein 86845,99481,99381,105184,96990,102793 Zn-dependent exopeptidases superfamily protein integral component of membrane [GO:0016021] locus:2197629; AT1G67420 Endoplasmic reticulum metallopeptidase Os07g0295800 protein A0A0P0X4T3 A0A0P0X4T3_ORYSJ Os07g0295800 OSNPB_070295800 ENOG411DUM5 SUD1 F4JKK0 SUD1_ARATH Probable E3 ubiquitin ligase SUD1 (EC 2.3.2.27) (Protein ECERIFERUM 9) (Protein SUPPRESSOR OF DRY2 DEFFECTS 1) (AtSUD1) (RING-type E3 ubiquitin transferase SUD1) (RING/U-box domain-containing protein) DISRUPTION PHENOTYPE: Semiglossy stem. Elevated drought tolerance and reduced transpiration rate. Elevated amounts of 18-carbon-length cutin monomers and shift in the cuticular wax profile toward the very-long-chain free fatty acids tetracosanoic acid (C24) and hexacosanoic acid (C26). {ECO:0000269|PubMed:22635115}. FUNCTION: Probable E3 ubiquitin ligase acting as a positive post-transcriptional regulator of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity. Might be involved in the quality control that degrades misfolded proteins (By similarity). {ECO:0000250, ECO:0000269|PubMed:22635115, ECO:0000269|PubMed:23404890}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-901032; 2.3.2.27 123004 Probable E3 ubiquitin ligase SUD1 (EC 2.3.2.27) (Protein ECERIFERUM 9) (Protein SUPPRESSOR OF DRY2 DEFFECTS 1) (AtSUD1) (RING-type E3 ubiquitin transferase SUD1) (RING/U-box domain-containing protein) integral component of endoplasmic reticulum membrane [GO:0030176]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; cuticle development [GO:0042335]; cutin biosynthetic process [GO:0010143]; isoprenoid biosynthetic process [GO:0008299]; positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity [GO:1900490]; response to water deprivation [GO:0009414]; suberin biosynthetic process [GO:0010345]; ubiquitin-dependent ERAD pathway [GO:0030433]; wax biosynthetic process [GO:0010025] DEVELOPMENTAL STAGE: Constitutively expressed throughout development. {ECO:0000269|PubMed:22635115}. TISSUE SPECIFICITY: Expressed in cotyledons, leaves, roots, stems, inflorescences and siliques. Expression higher at the top than at the base of the stem. {ECO:0000269|PubMed:22635115}. locus:2124251; AT4G34100 E3 ubiquitin-protein ligase Os06g0639100 protein,Os06g0639100 protein (Zinc finger (C3HC4-type RING finger)protein-like),Os06g0639000 protein (Os06g0639100 protein) (Fragment),Os06g0639100 protein (Fragment) B9FQ39,Q67WD9,Q0DAQ2,A0A0P0WZA1,A0A0P0WZ47 B9FQ39_ORYSJ,Q67WD9_ORYSJ,Q0DAQ2_ORYSJ,A0A0P0WZA1_ORYSJ,A0A0P0WZ47_ORYSJ Os06g0639100 OsJ_22101 OSNPB_060639100,Os06g0639100 OSNPB_060639100 P0458E02.3 P0523F01.32,Os06g0639100 Os06g0639000 OSNPB_060639100,Os06g0639100 OSNPB_060639100 ENOG411DUM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar efflux transporter for intercellular exchange Os09g0508250 protein (Fragment) A0A0P0XPA4 A0A0P0XPA4_ORYSJ Os09g0508250 OSNPB_090508250 ENOG411DUM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os11g0644100 protein A0A0P0Y4V7 A0A0P0Y4V7_ORYSJ Os11g0644100 OSNPB_110644100 ENOG411EMFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMFG Q84WB6,A0A1P8AUR3,F4HWZ9 Q84WB6_ARATH,A0A1P8AUR3_ARATH,F4HWZ9_ARATH At1g54650 (Methyltransferase family protein) (Uncharacterized protein At1g54650),Methyltransferase family protein 34625,36863,24172 At1g54650 (Methyltransferase family protein) (Uncharacterized protein At1g54650),Methyltransferase family protein methyltransferase activity [GO:0008168] locus:2199529; AT1G54650 Methyltransferase domain Methyltransferase-like protein (EC 2.1.1.-) Q7EYV5 Q7EYV5_ORYSJ Os07g0414200 OsJ_23955 OSJNBa0077F02.121 OSNPB_070414200 ENOG411EMFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411EMFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411EMFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EMFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-box zinc finger NA NA NA NA NA NA NA ENOG411EMFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen-specific protein Os12g0510900 protein (Fragment) Q0IN32 Q0IN32_ORYSJ Os12g0510900 Os12g0510900 OSNPB_120510900 ENOG411EMFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF4206 Os01g0549500 protein (Phox (PX) domain-containing protein-like) (cDNA clone:J023063K13, full insert sequence) Q5JKF8 Q5JKF8_ORYSJ Os01g0549500 Os01g0549500 B1156H12.13 OSNPB_010549500 ENOG411EMFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM NA NA NA NA NA NA NA ENOG411EMFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen-specific protein NA NA NA NA NA NA NA ENOG411EMF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411DSKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Component of the Mediator complex a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors Os02g0193900 protein (cDNA clone:001-007-F02, full insert sequence) (cDNA clone:J023020M17, full insert sequence) Q7F8R5 Q7F8R5_ORYSJ P0437H03.127 Os02g0193900 OsJ_05730 OSNPB_020193900 ENOG411EDXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411EDXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EDXX Q9LF45 Q9LF45_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein T10B6_50) 32594 Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein T10B6_50) hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2178920; AT5G17390 Universal stress protein family NA NA NA NA NA NA NA ENOG411EDXS MEE6.24 Q9FLL3,Q9SZ20,Q9FMD3,Q9SHK2,A0A1P8B6V5,A0A1P8BA34,A0A1P8BA16 PP412_ARATH,PP339_ARATH,PP389_ARATH,PPR17_ARATH,A0A1P8B6V5_ARATH,A0A1P8BA34_ARATH,A0A1P8BA16_ARATH Pentatricopeptide repeat-containing protein At5g41170, mitochondrial,Pentatricopeptide repeat-containing protein At4g26800,Pentatricopeptide repeat-containing protein At5g16640, mitochondrial,Pentatricopeptide repeat-containing protein At1g06580,Pentatricopeptide repeat (PPR) superfamily protein,Pentatricopeptide repeat (PPR-like) superfamily protein 59961,57841,57211,56164,49192,48227,56783 Pentatricopeptide repeat-containing protein At5g41170, mitochondrial,Pentatricopeptide repeat-containing protein At4g26800,Pentatricopeptide repeat-containing protein At5g16640, mitochondrial,Pentatricopeptide repeat-containing protein At1g06580,Pentatricopeptide repeat (PPR) superfamily protein,Pentatricopeptide repeat (PPR-like) superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2163041;,locus:2116292;,locus:2174165;,locus:2009155; AT5G41170,AT4G26800,AT5G16640,AT1G06580 repeat-containing protein NA NA NA NA NA NA NA ENOG411EDXR PBL4 Q5PP29,A0A1P8AUD4 PBL4_ARATH,A0A1P8AUD4_ARATH Probable serine/threonine-protein kinase PBL4 (EC 2.7.11.1) (PBS1-like protein 4),Protein kinase superfamily protein FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 45527,33120 Probable serine/threonine-protein kinase PBL4 (EC 2.7.11.1) (PBS1-like protein 4),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2205714; AT1G26970 STYKc NA NA NA NA NA NA NA ENOG411EDXQ Q8RWM6 P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 (Atp24) (p24 family protein delta1c) (p24delta1c) (p24 family protein delta5) (p24delta5) FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum. {ECO:0000250, ECO:0000269|PubMed:22577184}. R-ATH-6807878;R-ATH-6811434; 24346 Transmembrane emp24 domain-containing protein p24delta5 (Atp24) (p24 family protein delta1c) (p24delta1c) (p24 family protein delta5) (p24delta5) cis-Golgi network [GO:0005801]; COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2201098; AT1G21900 Emp24 gp25L p24 family NA NA NA NA NA NA NA ENOG411EDXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 2 sugar binding domain NA NA NA NA NA NA NA ENOG411EDXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain NA NA NA NA NA NA NA ENOG411EDXU SCL11,SCL30 Q9LTI5,Q9SNB8,A8MS63,Q3EAP0 SCL11_ARATH,SCL30_ARATH,A8MS63_ARATH,Q3EAP0_ARATH Scarecrow-like protein 11 (AtSCL11) (GRAS family protein 31) (AtGRAS-31),Scarecrow-like protein 30 (AtSCL30) (GRAS family protein 17) (AtGRAS-17),GRAS family transcription factor FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 69769,66629,62915,43297 Scarecrow-like protein 11 (AtSCL11) (GRAS family protein 31) (AtGRAS-31),Scarecrow-like protein 30 (AtSCL30) (GRAS family protein 17) (AtGRAS-17),GRAS family transcription factor nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and sepals. Expressed in siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.,TISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}. locus:2148293;,locus:2075155; AT5G59450,AT3G46600 scarecrow transcription factor family protein NA NA NA NA NA NA NA ENOG411EDXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDA1/CD39 (nucleoside phosphatase) family NA NA NA NA NA NA NA ENOG411EDXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: protein N-acetylglucosaminyltransferase activity NA NA NA NA NA NA NA ENOG411EDXH O22842 CHI61_ARATH Endochitinase At2g43610 (EC 3.2.1.14) ARA:AT2G43610-MONOMER; 3.2.1.14 29999 Endochitinase At2g43610 (EC 3.2.1.14) plasma membrane [GO:0005886]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response [GO:0006952]; polysaccharide catabolic process [GO:0000272] locus:2043934; AT2G43610 Chitin recognition protein NA NA NA NA NA NA NA ENOG411EDXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EDXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EDXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EDXA ERF038 Q9ZQP3 ERF38_ARATH Ethylene-responsive transcription factor ERF038 same as smb-3 single mutant FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 21617 Ethylene-responsive transcription factor ERF038 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; plant-type secondary cell wall biogenesis [GO:0009834]; transcription, DNA-templated [GO:0006351] locus:2058764; AT2G35700 AP2 NA NA NA NA NA NA NA ENOG411EDXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPT/TIG domain NA NA NA NA NA NA NA ENOG411EDXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SnoaL-like polyketide cyclase NA NA NA NA NA NA NA ENOG411EDXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aldehyde dehydrogenase family 2 member B4 mitochondrial-like NA NA NA NA NA NA NA ENOG411EDXD Q7Y224 Q7Y224_ARATH At1g74490 (Protein kinase superfamily protein) (Uncharacterized protein At1g74490) 44646 At1g74490 (Protein kinase superfamily protein) (Uncharacterized protein At1g74490) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2019180; AT1G74490 STYKc NA NA NA NA NA NA NA ENOG411EDX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EDX8 C0SUU5 C0SUU5_ARATH Uncharacterized protein At1g11490 (Zinc finger (C2H2 type) family protein) (Fragment) 40306 Uncharacterized protein At1g11490 (Zinc finger (C2H2 type) family protein) (Fragment) transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2200101; zinc finger NA NA NA NA NA NA NA ENOG411EDX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0149500 protein (cDNA clone:002-149-F09, full insert sequence) Q6Z423 Q6Z423_ORYSJ Os02g0149500 Os02g0149500 OSNPB_020149500 P0479D12.32 ENOG411EDX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411EDX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DCD NA NA NA NA NA NA NA ENOG411EDX0 WRKY25 O22921 WRK25_ARATH Probable WRKY transcription factor 25 (WRKY DNA-binding protein 25) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18839316}. WT phenotype. Root bending and root elongation assays under salt osmotic and ABA treatments showed no significant difference compared to WT.,Double mutant roots were significantly shorter than WT toots when under salt-stress. FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}. 44134 Probable WRKY transcription factor 25 (WRKY DNA-binding protein 25) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular heat acclimation [GO:0070370]; cellular response to heat [GO:0034605]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and seeds. {ECO:0000269|PubMed:18839316}. locus:2060805; AT2G30250 Transcription factor NA NA NA NA NA NA NA ENOG411EDX7 Q6E260 Q6E260_ARATH E3 ubiquitin ligase 27802 E3 ubiquitin ligase integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2083323; AT3G06710 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EDX6 XXT3,XXT5,XXT4 Q9LF80,Q9CA75,Q9M9U0 XXT3_ARATH,XXT5_ARATH,XXT4_ARATH Probable xyloglucan 6-xylosyltransferase 3 (EC 2.4.2.39) (Putative glycosyltransferase 3) (AtGT3) (EC 2.4.-.-),Probable xyloglucan 6-xylosyltransferase 5 (EC 2.4.2.39) (Putative glycosyltransferase 5) (AtGT5) (EC 2.4.-.-),Xyloglucan 6-xylosyltransferase 4 (EC 2.4.2.39) (Putative glycosyltransferase 4) (AtGT4) (EC 2.4.-.-) DISRUPTION PHENOTYPE: Root hair phenotype, characterized by short root hairs with bubble-like extrusions at the tip. Alteration of the main root cellular morphology. Reduced xyloglucan content. {ECO:0000269|PubMed:18557833}. FUNCTION: Probable xyloglucan xylosyltransferase involved in the biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q9CA75}.,FUNCTION: Probable xyloglucan xylosyltransferase involved in the biosynthesis of xyloglucan in roots. May act in association with XXT1 and XXT2 (PubMed:18557833). Associates with other xyloglucan-synthesizing enzymes to form multiprotein complexes for xyloglucan synthesis in the Golgi (PubMed:25392066). {ECO:0000269|PubMed:18557833, ECO:0000269|PubMed:25392066}.,FUNCTION: Xylosyltransferase specific to UDP-D-xylose that accepts cellohexaose as substrate to produce xyloglucan. {ECO:0000269|PubMed:22670626}. ARA:AT5G07720-MONOMER;,ARA:AT1G74380-MONOMER;MetaCyc:AT1G74380-MONOMER;,ARA:AT1G18690-MONOMER; 2.4.2.39; 2.4.2.39; 2.4.-.- 52367,51728,58314 Probable xyloglucan 6-xylosyltransferase 3 (EC 2.4.2.39) (Putative glycosyltransferase 3) (AtGT3) (EC 2.4.-.-),Probable xyloglucan 6-xylosyltransferase 5 (EC 2.4.2.39) (Putative glycosyltransferase 5) (AtGT5) (EC 2.4.-.-),Xyloglucan 6-xylosyltransferase 4 (EC 2.4.2.39) (Putative glycosyltransferase 4) (AtGT4) (EC 2.4.-.-) endosome [GO:0005768]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring hexosyl groups [GO:0016758]; xyloglucan 6-xylosyltransferase activity [GO:0033843]; xyloglucan biosynthetic process [GO:0009969]; xyloglucan metabolic process [GO:0010411],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring hexosyl groups [GO:0016758]; xyloglucan 6-xylosyltransferase activity [GO:0033843]; root hair elongation [GO:0048767]; xyloglucan biosynthetic process [GO:0009969]; xyloglucan metabolic process [GO:0010411],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring hexosyl groups [GO:0016758]; UDP-xylosyltransferase activity [GO:0035252]; xyloglucan 6-xylosyltransferase activity [GO:0033843]; xyloglucan biosynthetic process [GO:0009969]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Highly expressed in roots, stems and cauline leaves, and at lower levels in rosette leaves, flowers and siliques. {ECO:0000269|PubMed:18557833}. locus:2160369;,locus:2019090;,locus:2035030; AT5G07720,AT1G74380,AT1G18690 galactosyl transferase GMA12/MNN10 family NA NA NA NA NA NA NA ENOG411EDX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411EDX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRAF-type zinc finger NA NA NA NA NA NA NA ENOG411EAQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EAQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TH1 protein NA NA NA NA NA NA NA ENOG411EKPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAQ4 Q9LM58,F4I8K1 Q9LM58_ARATH,F4I8K1_ARATH BPS1-like protein (F2E2.8) (Uncharacterized protein At1g22030) (Uncharacterized protein At1g22030/F2E2_4),BPS1-like protein 37529,36244 BPS1-like protein (F2E2.8) (Uncharacterized protein At1g22030) (Uncharacterized protein At1g22030/F2E2_4),BPS1-like protein integral component of membrane [GO:0016021] locus:2030591;,locus:504956240; AT1G22030,AT1G77855 NA NA NA NA NA NA NA NA ENOG411E70M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKPH CRK39 Q9SYS7,A0A1P8B489,A0A1P8B4A2,A0A1P8B476 CRK39_ARATH,A0A1P8B489_ARATH,A0A1P8B4A2_ARATH,A0A1P8B476_ARATH Putative cysteine-rich receptor-like protein kinase 39 (Cysteine-rich RLK39) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 39 2.7.11.- 73569,65778,70477,58005 Putative cysteine-rich receptor-like protein kinase 39 (Cysteine-rich RLK39) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 39 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2137184; AT4G04540 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E184 TCP23 Q9LQF0 TCP23_ARATH Transcription factor TCP23 35950 Transcription factor TCP23 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2014661; AT1G35560 transcription DNA-dependent Transcription factor PCF3,Os11g0175700 protein Q53PH2,A0A0P0XZQ5 PCF3_ORYSJ,A0A0P0XZQ5_ORYSJ PCF3 Os11g0175700 LOC_Os11g07460,Os11g0175700 OSNPB_110175700 FUNCTION: Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. ENOG411E185 F24G16.250 Q9M1X8 Q9M1X8_ARATH Nucleic acid-binding, OB-fold-like protein (Uncharacterized protein At3g59980) (Uncharacterized protein F24G16.250) 29745 Nucleic acid-binding, OB-fold-like protein (Uncharacterized protein At3g59980) (Uncharacterized protein F24G16.250) aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; chloroplast [GO:0009507]; methionyl glutamyl tRNA synthetase complex [GO:0017102]; tRNA binding [GO:0000049]; tRNA aminoacylation for protein translation [GO:0006418] locus:2080492; AT3G59980 Putative tRNA binding domain Os04g0303900 protein Q0JEB0 Q0JEB0_ORYSJ Os04g0303900 Os04g0303900 OSNPB_040303900 ENOG411E189 AOX4 Q56X52 AOX4_ARATH Ubiquinol oxidase 4, chloroplastic/chromoplastic (EC 1.10.3.11) (Alternative oxidase 4) (Plastid terminal oxidase) (Protein IMMUTANS) DISRUPTION PHENOTYPE: Variegated cotyledons and leaves. The amount of white tissue increases with light intensity. {ECO:0000269|PubMed:7920709}. lacks the immutants protein Seedling lethal (inferred from pigment defect)-S. Rodermel-1999 FUNCTION: Acts early in chloroplast biogenesis as a component of a redox chain responsible for phytoene desaturation. Prevents the generation of toxic oxygen radicals and photooxidation of the nascent photosynthetic apparatus. Involved in the differentiation of multiple plastid types, including chloroplasts, amyloplasts, and etioplasts. Might participate in the chloroplast respiratory chain. {ECO:0000269|PubMed:10938359, ECO:0000269|PubMed:11553735, ECO:0000269|PubMed:14504923, ECO:0000269|PubMed:15032871, ECO:0000269|PubMed:16249174, ECO:0000269|PubMed:16449381, ECO:0000269|PubMed:19386811, ECO:0000269|PubMed:7920709, ECO:0000269|PubMed:9878631, ECO:0000269|PubMed:9878632}. 1.10.3.11 40574 Ubiquinol oxidase 4, chloroplastic/chromoplastic (EC 1.10.3.11) (Alternative oxidase 4) (Plastid terminal oxidase) (Protein IMMUTANS) chloroplast thylakoid membrane [GO:0009535]; chromoplast membrane [GO:0046862]; integral component of membrane [GO:0016021]; respiratory chain [GO:0070469]; thylakoid [GO:0009579]; alternative oxidase activity [GO:0009916]; metal ion binding [GO:0046872]; ubiquinol:oxygen oxidoreductase activity [GO:0102721]; carotenoid biosynthetic process [GO:0016117]; plastid organization [GO:0009657] DEVELOPMENTAL STAGE: Expressed throughout the development of the leaves. {ECO:0000269|PubMed:14504923}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11553735}. locus:2005514; AT4G22260 Ubiquinol oxidase Ubiquinol oxidase (EC 1.10.3.11),Immutans protein, putative, expressed (Os03g0847500 protein) (cDNA clone:J033073L16, full insert sequence) O82522,Q10AM8 O82522_ORYSJ,Q10AM8_ORYSJ IM1 Os04g0668900 OsJ_16557 OSJNBa0043A12.16 OSNPB_040668900,Os03g0847500 LOC_Os03g63010 OSNPB_030847500 ENOG411E18F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dof zinc finger protein NA NA NA NA NA NA NA ENOG411E18A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of Vps4 activity in the MVB pathway Expressed protein (Os03g0257500 protein) (cDNA clone:001-002-A09, full insert sequence),Os03g0257300 protein Q10NV0,B9F743 Q10NV0_ORYSJ,B9F743_ORYSJ LOC_Os03g15220 Os03g0257500 OsJ_10194 OSNPB_030257500,Os03g0257300 OsJ_10193 OSNPB_030257300 ENOG411E18W F4K5V3 F4K5V3_ARATH Glycosyltransferase family exostosin protein 63740 Glycosyltransferase family exostosin protein transferase activity [GO:0016740] locus:2152632; AT5G37000 Exostosin family NA NA NA NA NA NA NA ENOG411E9CE PAE1 F4I107 PAE1_ARATH Pectin acetylesterase 1 (EC 3.1.1.-) FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000250|UniProtKB:B9DFR3}. 3.1.1.- 42345 Pectin acetylesterase 1 (EC 3.1.1.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555] locus:2012245; AT1G09550 Pectinacetylesterase NA NA NA NA NA NA NA ENOG411E9CD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411E9CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Os11g0529036 protein,Os11g0529100 protein,Os11g0529125 protein A0A0P0Y325,A0A0P0Y383,A0A0P0Y385 A0A0P0Y325_ORYSJ,A0A0P0Y383_ORYSJ,A0A0P0Y385_ORYSJ Os11g0529036 OSNPB_110529036,Os11g0529100 OSNPB_110529100,Os11g0529125 OSNPB_110529125 ENOG411E9CI NPF5.11 Q8RX67 PTR24_ARATH Protein NRT1/ PTR FAMILY 5.11 (AtNPF5.11) R-ATH-427975;R-ATH-6798695; 60047 Protein NRT1/ PTR FAMILY 5.11 (AtNPF5.11) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:17481610}. locus:2030316; AT1G72130 POT family NA NA NA NA NA NA NA ENOG411E9CH Q3E9E2,F4JY38 Q3E9E2_ARATH,F4JY38_ARATH DNAJ heat shock amino-terminal domain protein, putative (DUF3444) 39341,25951 DNAJ heat shock amino-terminal domain protein, putative (DUF3444) locus:2180059;,locus:2180049; AT5G18720,AT5G18710 CONTAINS InterPro DOMAIN s Molecular chaperone heat shock protein Hsp40 DnaJ (InterPro IPR015609) NA NA NA NA NA NA NA ENOG411E9CN LRK10L-2.2,LRK10L-2.3,MXA21.130 F4KA50,F4KA51,A0A1P8BH82 LRL22_ARATH,LRL23_ARATH,A0A1P8BH82_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.2),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.3),Protein kinase family protein 2.7.11.1 69565,69496,64517 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.2),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.3),Protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein kinase activity [GO:0004672] locus:2176697;,locus:2176707; AT5G38240,AT5G38250 STYKc NA NA NA NA NA NA NA ENOG411E9C7 IQD23 Q9FIT1 Q9FIT1_ARATH At5g62070/mtg10_90 (IQ-domain 23) 44271 At5g62070/mtg10_90 (IQ-domain 23) locus:2174088; AT5G62070 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411DYU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os01g0111400 protein (cDNA clone:J013063C15, full insert sequence),Os01g0111400 protein (Fragment) Q0JRB0,A0A0P0UXY9 Q0JRB0_ORYSJ,A0A0P0UXY9_ORYSJ Os01g0111400 Os01g0111400 OsJ_00091 OSNPB_010111400,Os01g0111400 OSNPB_010111400 ENOG411DYU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caleosin related protein Os02g0734500 protein,Os02g0734400 protein (Fragment) A0A0N7KG19,A0A0P0VP64 A0A0N7KG19_ORYSJ,A0A0P0VP64_ORYSJ Os02g0734500 OSNPB_020734500,Os02g0734400 OSNPB_020734400 ENOG411DYU4 PME32,PME44 Q9LXK7,Q9SMY7,A0A1P8B4B4 PME32_ARATH,PME44_ARATH,A0A1P8B4B4_ARATH Probable pectinesterase/pectinesterase inhibitor 32 [Includes: Pectinesterase inhibitor 32 (Pectin methylesterase inhibitor 32); Pectinesterase 32 (PE 32) (EC 3.1.1.11) (Pectin methylesterase 32) (AtPME32)],Probable pectinesterase/pectinesterase inhibitor 44 [Includes: Pectinesterase inhibitor 44 (Pectin methylesterase inhibitor 44); Pectinesterase 44 (PE 44) (EC 3.1.1.11) (Pectin methylesterase 44) (AtPME44)],Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589}. ARA:AT3G43270-MONOMER;,ARA:AT4G33220-MONOMER; 3.1.1.11 57636,58499,45342 Probable pectinesterase/pectinesterase inhibitor 32 [Includes: Pectinesterase inhibitor 32 (Pectin methylesterase inhibitor 32); Pectinesterase 32 (PE 32) (EC 3.1.1.11) (Pectin methylesterase 32) (AtPME32)],Probable pectinesterase/pectinesterase inhibitor 44 [Includes: Pectinesterase inhibitor 44 (Pectin methylesterase inhibitor 44); Pectinesterase 44 (PE 44) (EC 3.1.1.11) (Pectin methylesterase 44) (AtPME44)],Pectinesterase (EC 3.1.1.11) cell periphery [GO:0071944]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; defense response to Gram-negative bacterium [GO:0050829]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}.,DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2084751;,locus:2125949; AT3G43270,AT4G33220 pectinesterase Pectinesterase (EC 3.1.1.11) Q6ZLF6 Q6ZLF6_ORYSJ Os08g0450100 Os08g0450100 OJ1005_H01.19 OSNPB_080450100 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. ENOG411DYU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: RNA-binding region RNP-1 NA NA NA NA NA NA NA ENOG411DYU3 Q93V68,Q9LU80 Q93V68_ARATH,Q9LU80_ARATH Regulator of chromosome condensation (RCC1) family protein (Uncharacterized protein At3g26100) 46616,57386 Regulator of chromosome condensation (RCC1) family protein (Uncharacterized protein At3g26100) locus:2092190; AT3G26100 E3 ubiquitin-protein ligase Os02g0597000 protein (Rjs-like protein) (cDNA clone:J033087N01, full insert sequence),Os12g0284000 protein (Regulator of chromosome condensation, putative, expressed) (cDNA clone:J013001H18, full insert sequence) (cDNA clone:J013002D05, full insert sequence) (cDNA clone:J013049P07, full insert sequence),Os12g0284000 protein,Os12g0284000 protein (Fragment) Q6K907,Q2QTS8,A0A0P0Y939,A0A0P0Y967 Q6K907_ORYSJ,Q2QTS8_ORYSJ,A0A0P0Y939_ORYSJ,A0A0P0Y967_ORYSJ Os02g0597000 Os02g0597000 OJ1568_B05.16 OSNPB_020597000,Os12g0284000 LOC_Os12g18650 Os12g0284000 OsJ_35777 OSNPB_120284000,Os12g0284000 OSNPB_120284000 ENOG411DYU0 NIR1 Q39161 NIR_ARATH Ferredoxin--nitrite reductase, chloroplastic (NiR) (EC 1.7.7.1) FUNCTION: Catalyzes the six-electron reduction of nitrite to ammonium. {ECO:0000269|PubMed:11402201}. PATHWAY: Nitrogen metabolism; nitrate reduction (assimilation). 1.7.7.1 65505 Ferredoxin--nitrite reductase, chloroplastic (NiR) (EC 1.7.7.1) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrion [GO:0005739]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ferredoxin-nitrite reductase activity [GO:0048307]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; nitrite reductase (NO-forming) activity [GO:0050421]; nitrate assimilation [GO:0042128]; response to nitrate [GO:0010167] locus:2053654; AT2G15620 reductase Ferredoxin--nitrite reductase, chloroplastic (EC 1.7.7.1),Os01g0357100 protein,Os01g0357500 protein,Os02g0765900 protein (Fragment) Q42997,Q0JMV6,A0A0P0V2J4,A0A0N7KCY0,A0A0P0VPW9 NIR_ORYSJ,Q0JMV6_ORYSJ,A0A0P0V2J4_ORYSJ,A0A0N7KCY0_ORYSJ,A0A0P0VPW9_ORYSJ Os01g0357100 LOC_Os01g25484 P0025H06.19-1 P0025H06.19-2,Os01g0357100 Os01g0357100 OSNPB_010357100,Os01g0357500 OSNPB_010357500,Os01g0357100 OSNPB_010357100,Os02g0765900 OSNPB_020765900 FUNCTION: Catalyzes the six-electron reduction of nitrite to ammonium. ENOG411DYU1 MPK14,MPK1,MPK2,MPK7 O23236,Q39021,Q39022,Q39027 MPK14_ARATH,MPK1_ARATH,MPK2_ARATH,MPK7_ARATH Mitogen-activated protein kinase 14 (AtMPK14) (MAP kinase 14) (EC 2.7.11.24),Mitogen-activated protein kinase 1 (AtMPK1) (MAP kinase 1) (EC 2.7.11.24),Mitogen-activated protein kinase 2 (AtMPK2) (MAP kinase 2) (EC 2.7.11.24),Mitogen-activated protein kinase 7 (AtMPK7) (MAP kinase 7) (EC 2.7.11.24) FUNCTION: MKK3-MPK7 module acts as a positive regulator of PR1 gene expression. {ECO:0000269|PubMed:17933903}. R-ATH-110056;R-ATH-112409;R-ATH-112411;R-ATH-198753;R-ATH-198765;R-ATH-202670;R-ATH-2559582;R-ATH-3371453;R-ATH-375165;R-ATH-442742;R-ATH-444257;R-ATH-445144;R-ATH-5673001;R-ATH-5674135;R-ATH-5674499;R-ATH-6798695;R-ATH-881907; 2.7.11.24; 2.7.11.24 41976,42644,43125,42299 Mitogen-activated protein kinase 14 (AtMPK14) (MAP kinase 14) (EC 2.7.11.24),Mitogen-activated protein kinase 1 (AtMPK1) (MAP kinase 1) (EC 2.7.11.24),Mitogen-activated protein kinase 2 (AtMPK2) (MAP kinase 2) (EC 2.7.11.24),Mitogen-activated protein kinase 7 (AtMPK7) (MAP kinase 7) (EC 2.7.11.24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; auxin-activated signaling pathway [GO:0009734]; regulation of gene expression [GO:0010468],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; protein kinase activity [GO:0004672]; protein phosphorylation [GO:0006468]; regulation of gene expression [GO:0010468],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; defense response [GO:0006952]; regulation of gene expression [GO:0010468]; response to hydrogen peroxide [GO:0042542] TISSUE SPECIFICITY: Highest levels in the stem. Present in the leaf, root and flower, but not in seeds. {ECO:0000269|PubMed:8130795}. locus:2115445;,locus:2012808;,locus:2202892;,locus:2053119; AT4G36450,AT1G10210,AT1G59580,AT2G18170 Mitogen-activated protein kinase Mitogen-activated protein kinase 4 (MAP kinase 4) (EC 2.7.11.24) (Multiple stress-responsive MAP kinase 3) (OsMAP2) (OsMSRMK3),Mitogen-activated protein kinase 3 (MAP kinase 3) (EC 2.7.11.24) (MAP kinase 2) (OsMAP3) (OsMAPK2) Q5Z859,Q6Z437 MPK4_ORYSJ,MPK3_ORYSJ MPK4 MAP2 MSRMK3 Os06g0699400 LOC_Os06g48590 OsJ_22520 P0468G03.11,MPK3 MAP3 MAPK2 Os02g0148100 LOC_Os02g05480 P0479D12.11 ENOG411DYUF F4I3Y1 F4I3Y1_ARATH Zinc ion binding protein 42201 Zinc ion binding protein locus:2020578; AT1G70150 zinc finger MYND domain-containing protein 15-like Os07g0481000 protein (cDNA clone:J023091N20, full insert sequence),Os07g0481000 protein Q0D6G9,A0A0N7KNF6 Q0D6G9_ORYSJ,A0A0N7KNF6_ORYSJ Os07g0481000 Os07g0481000 OsJ_24245 OSNPB_070481000,Os07g0481000 OSNPB_070481000 ENOG411DYUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-locus glycoprotein family NA NA NA NA NA NA NA ENOG411DYUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2985) Os11g0109700 protein,Os12g0109700 protein (Fragment) Q2RBJ0,A0A0P0XXZ3,A0A0P0Y606 Q2RBJ0_ORYSJ,A0A0P0XXZ3_ORYSJ,A0A0P0Y606_ORYSJ LOC_Os11g01850 Os11g0109700 OSNPB_110109700,Os11g0109700 OSNPB_110109700,Os12g0109700 OSNPB_120109700 ENOG411DYUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Os02g0605400 protein (Fragment) A0A0P0VLJ0 A0A0P0VLJ0_ORYSJ Os02g0605400 OSNPB_020605400 ENOG411DYUB GLX2-2 O24496 GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasmic (EC 3.1.2.6) (Glyoxalase II) (Glx II) FUNCTION: Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid. {ECO:0000269|PubMed:11085979, ECO:0000269|PubMed:14529289, ECO:0000269|PubMed:19834746}. PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 2/2. R-ATH-70268; 3.1.2.6; 3.1.2.6 28792 Hydroxyacylglutathione hydrolase cytoplasmic (EC 3.1.2.6) (Glyoxalase II) (Glx II) cytosol [GO:0005829]; hydroxyacylglutathione hydrolase activity [GO:0004416]; metal ion binding [GO:0046872]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243] TISSUE SPECIFICITY: Mainly expressed in flowers and flower buds. Also detected in roots and leaves. {ECO:0000269|PubMed:9349270}. locus:2103232; AT3G10850 Hydroxyacylglutathione hydrolase Hydroxyacylglutathione hydrolase, putative, expressed (Os03g0332400 protein) (cDNA clone:J033121D04, full insert sequence) Q10LW8 Q10LW8_ORYSJ Os03g0332400 LOC_Os03g21460 Os03g0332400 OsJ_10718 OSNPB_030332400 ENOG411DYUC Q1PEZ8 FB117_ARATH F-box protein At2g26160 37952 F-box protein At2g26160 locus:2057454; AT2G26160 Protein of unknown function (DUF295) Os08g0410266 protein A0A0P0XFU3 A0A0P0XFU3_ORYSJ Os08g0410266 OSNPB_080410266 ENOG411DYUA Q8L5Z1 GDL17_ARATH GDSL esterase/lipase At1g33811 (EC 3.1.1.-) (Extracellular lipase At1g33811) ARA:AT1G33811-MONOMER; 3.1.1.- 41697 GDSL esterase/lipase At1g33811 (EC 3.1.1.-) (Extracellular lipase At1g33811) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:505006166; AT1G33811 GDSL esterase lipase Os12g0274200 protein Q0INY8 Q0INY8_ORYSJ Os12g0274200 Os12g0274200 OSNPB_120274200 ENOG411DYUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain OSJNBa0022H21.20 protein (Os04g0476500 protein) Q7XKT7 Q7XKT7_ORYSJ Os04g0476500 Os04g0476500 OSJNBa0022H21.20 OSNPB_040476500 ENOG411DYUM Q9SK10 Q9SK10_ARATH At2g28480 (RNA-binding CRS1 / YhbY (CRM) domain protein) (Uncharacterized protein At2g28480) 42965 At2g28480 (RNA-binding CRS1 / YhbY (CRM) domain protein) (Uncharacterized protein At2g28480) RNA binding [GO:0003723] locus:2056558; AT2G28480 Group II intron splicing factor Group II intron splicing factor CRS1-like (Os01g0958400 protein) (cDNA clone:J013093H11, full insert sequence),Group II intron splicing factor CRS1-like (Os01g0958400 protein),Group II intron splicing factor CRS1-like (Os01g0958400 protein) (cDNA clone:J023097P14, full insert sequence) Q5JK63,Q5JK62,Q5JK64 Q5JK63_ORYSJ,Q5JK62_ORYSJ,Q5JK64_ORYSJ OJ1294_F06.29-2 Os01g0958400 P0401G10.3-2 OSNPB_010958400,OJ1294_F06.29-3 Os01g0958400 P0401G10.3-3 OSNPB_010958400,OJ1294_F06.29-1 P0401G10.3-1 Os01g0958400 OsJ_04827 OSNPB_010958400 ENOG411DYUJ LDL2 Q9LID0 LDL2_ARATH Lysine-specific histone demethylase 1 homolog 2 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 2) (Protein LSD1-LIKE 2) Late flowering. Flowers later than flc3 single mutant but earlier than ldl1/ldl2 double mutant. FUNCTION: Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin of the floral repressor FLOWERING LOCUS C (FLC) and the sporophytically silenced floral repressor FWA (PubMed:17921315). Seems to act in partial redundancy with FLOWERING LOCUS D (FLD) to repress FLC expression (PubMed:17921315). Required for cytosine methylation of FWA (PubMed:17921315). Controls primary seed dormancy by regulating DOG1 and abscisic acid signaling-related genes (PubMed:25852712). {ECO:0000269|PubMed:17921315, ECO:0000269|PubMed:25852712}. ARA:AT3G13682-MONOMER; R-ATH-3214842; 1.-.-.- 82350 Lysine-specific histone demethylase 1 homolog 2 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 2) (Protein LSD1-LIKE 2) DNA binding [GO:0003677]; oxidoreductase activity [GO:0016491]; histone H3-K4 methylation [GO:0051568]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the shoot and root apical regions of young seedlings. Expressed in inflorescences. {ECO:0000269|PubMed:17921315}. locus:2091501; AT3G13682 lysine-specific histone demethylase 1 Lysine-specific histone demethylase 1 homolog 2 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 2) (Protein LSD1-LIKE 2),Os08g0143400 protein Q6YYZ1,A0A0P0XBS5 LDL2_ORYSJ,A0A0P0XBS5_ORYSJ Os08g0143400 LOC_Os08g04780 P0025F03.17-1 P0025F03.17-2 P0473D02.39-1 P0473D02.39-2,Os08g0143400 OSNPB_080143400 FUNCTION: Probable histone demethylase. {ECO:0000250}. ENOG411DYUK DOF5.7 Q9LSL6 DOF57_ARATH Dof zinc finger protein DOF5.7 (AtDOF5.7) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 34854 Dof zinc finger protein DOF5.7 (AtDOF5.7) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; guard cell differentiation [GO:0010052]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cell wall pectin metabolic process [GO:1902066]; regulation of transcription, DNA-templated [GO:0006355]; stomatal movement [GO:0010118]; transcription, DNA-templated [GO:0006351] locus:2155755; AT5G65590 zinc finger protein Dof-type zinc finger protein 08 (Os03g0585600 protein) (Fragment) C7DQD9 C7DQD9_ORYSJ Os03g0585600 OSNPB_030585600 ENOG411DYUH HLP Q93Z17 HLP_ARATH 50S ribosomal protein HLP, mitochondrial (Protein HUELLENLOS PARALOG) FUNCTION: Binds to 23S rRNA in mitochondrion. {ECO:0000250}. 18569 50S ribosomal protein HLP, mitochondrial (Protein HUELLENLOS PARALOG) mitochondrial large ribosomal subunit [GO:0005762]; mitochondrion [GO:0005739]; large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] TISSUE SPECIFICITY: Mostly expressed in leaves and inflorescences, including floral organs and meristems, and, to a lower extent, in pistils. {ECO:0000269|PubMed:11752383}. locus:2161368; AT5G46160 ribosomal protein Os12g0616200 protein (Ribosomal protein L14 containing protein, expressed) (cDNA clone:001-040-D12, full insert sequence) (cDNA clone:006-202-B02, full insert sequence) (cDNA clone:J013036H15, full insert sequence) Q2QM60 Q2QM60_ORYSJ LOC_Os12g42180 Os12g0616200 OSNPB_120616200 ENOG411DYUI F4IMF6 F4IMF6_ARATH DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632) 82635 DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632) DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2827650; AT2G17110 Protein of unknown function (DUF632) Os02g0669900 protein (Fragment) A0A0P0VMR4 A0A0P0VMR4_ORYSJ Os02g0669900 OSNPB_020669900 ENOG411DYUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0443700 protein (Fragment) A0A0P0WB29 A0A0P0WB29_ORYSJ Os04g0443700 OSNPB_040443700 ENOG411DYUW DMP10 Q3E912 DMP10_ARATH Protein DMP10 (AtDMP10) FUNCTION: Involved in membrane remodeling. {ECO:0000250|UniProtKB:Q9LVF4}. 21167 Protein DMP10 (AtDMP10) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; kinase activity [GO:0016301]; endomembrane system organization [GO:0010256] TISSUE SPECIFICITY: Restricted to flowers. {ECO:0000269|PubMed:20712629}. locus:2146380; AT5G27370 Protein of unknown function (DUF679) Os01g0388700 protein Q84SB1 Q84SB1_ORYSJ Os01g0388700 OsJ_01892 OSJNBb0008D07.40 OSNPB_010388700 ENOG411DYUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family OSJNBb0034I13.5 protein (Os04g0636500 protein) (cDNA clone:002-145-H10, full insert sequence),Os06g0222500 protein Q0J9Q5,A0A0P0WUQ2 Q0J9Q5_ORYSJ,A0A0P0WUQ2_ORYSJ Os04g0636500 Os04g0636500 OSJNBb0034I13.5 OSNPB_040636500,Os06g0222500 OSNPB_060222500 ENOG411DYUU F3F20.2 Q9SYJ8 Q9SYJ8_ARATH F3F20.2 protein (UPSTREAM OF FLC protein (DUF966)) 41639 F3F20.2 protein (UPSTREAM OF FLC protein (DUF966)) locus:504956226; AT1G05577 Domain of unknown function (DUF966) Os01g0778100 protein (Fragment) A0A0P0V8V1 A0A0P0V8V1_ORYSJ Os01g0778100 OSNPB_010778100 ENOG411DYUR Q84V03 FB348_ARATH F-box protein At2g16365 88623 F-box protein At2g16365 nucleus [GO:0005634]; chloroplast organization [GO:0009658]; circadian behavior [GO:0048512]; positive regulation of transcription, DNA-templated [GO:0045893]; response to karrikin [GO:0080167] locus:504956066; AT2G16365 NA NA NA NA NA NA NA NA ENOG411DYUS O80572 O80572_ARATH Expressed protein (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At2g44020) 58074 Expressed protein (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At2g44020) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2051814; AT2G44020 mitochondrial transcription termination factor family protein Mitochondrial transcription termination factor-like (Os02g0783100 protein) (cDNA clone:J013027P06, full insert sequence) Q6K7E2 Q6K7E2_ORYSJ Os02g0783100 Os02g0783100 OJ1311_D08.15 OSNPB_020783100 ENOG411DYUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0192300 protein (Putative MCB2 protein) (cDNA clone:001-045-B07, full insert sequence),Os05g0195700 protein (Putative Myb-related transcription factor) (cDNA clone:006-306-H01, full insert sequence) (cDNA clone:J013029P13, full insert sequence),Os01g0192300 protein Q5SNG6,Q6L4N3,Q5SNG5 Q5SNG6_ORYSJ,Q6L4N3_ORYSJ,Q5SNG5_ORYSJ P0671B11.19-1 Os01g0192300 OsJ_00711 OSNPB_010192300,Os05g0195700 OsJ_17441 OSNPB_050195700 P0473H02.9,P0671B11.19-3 Os01g0192300 OSNPB_010192300 ENOG411DYUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os09g0519100 protein A0A0P0XQ00 A0A0P0XQ00_ORYSJ Os09g0519100 OSNPB_090519100 ENOG411DYUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BSD domain containing protein Os06g0175400 protein (Fragment) A0A0P0WTP5 A0A0P0WTP5_ORYSJ Os06g0175400 OSNPB_060175400 ENOG411EGUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family NA NA NA NA NA NA NA ENOG411EGUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0335900 protein A0A0P0VX46 A0A0P0VX46_ORYSJ Os03g0335900 OSNPB_030335900 ENOG411EGUH MTE17.16 Q9FJ65 Q9FJ65_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At5g55450) 11004 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At5g55450) response to other organism [GO:0051707] locus:2173942; AT5G55450 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EGUN F19P19.9 P93815,A0A1P8AWD1 P93815_ARATH,A0A1P8AWD1_ARATH C2H2-like zinc finger protein (F19P19.9) (Uncharacterized protein At1g04445),C2H2-like zinc finger protein 19205,19449 C2H2-like zinc finger protein (F19P19.9) (Uncharacterized protein At1g04445),C2H2-like zinc finger protein nucleic acid binding [GO:0003676] locus:504956290; AT1G04445 Zinc finger C2H2 type family protein NA NA NA NA NA NA NA ENOG411EGUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mannose glucose-specific lectin (Fragment) OSJNBa0041M21.2 protein (Os04g0295400 protein) Q7XVT4 Q7XVT4_ORYSJ Os04g0295400 Os04g0295400 OSJNBa0041M21.2 OSNPB_040295400 ENOG411EGUC F4I2G0 F4I2G0_ARATH Ankyrin-repeat containing protein 11945 Ankyrin-repeat containing protein integral component of membrane [GO:0016021]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031] locus:2020848; AT1G03660 NA NA NA NA NA NA NA NA ENOG411EGUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1605 NA NA NA NA NA NA NA ENOG411EGUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUZ Q9LI63,F4IAL8 Q9LI63_ARATH,F4IAL8_ARATH MuDR family transposase,SWAP/surp RNA-binding domain protein 20891,26227 MuDR family transposase,SWAP/surp RNA-binding domain protein catalytic step 2 spliceosome [GO:0071013]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; RNA binding [GO:0003723]; mRNA 3'-splice site recognition [GO:0000389]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381] locus:2102911;,locus:2194050; AT3G30370,AT1G18050 Pfam:MuDR NA NA NA NA NA NA NA ENOG411EGUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os10g0387150 protein A0A0P0XU47 A0A0P0XU47_ORYSJ Os10g0387150 OSNPB_100387150 ENOG411EGUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein family (UPF0051) NA NA NA NA NA NA NA ENOG411EGUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EGUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EGUU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HIV-1 Tat interactive protein 2 30kDa NA NA NA NA NA NA NA ENOG411EGU9 ATGRP20 Q9LY07,F4K829 Q9LY07_ARATH,F4K829_ARATH Glycine-rich protein 20 (Glycine-rich protein GRP20) (Oleosin-like protein) (Putative glycine-rich protein GRP20),Oleosin family protein 15459,14241 Glycine-rich protein 20 (Glycine-rich protein GRP20) (Oleosin-like protein) (Putative glycine-rich protein GRP20),Oleosin family protein extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid binding [GO:0008289]; lipid storage [GO:0019915]; sexual reproduction [GO:0019953],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915]; sexual reproduction [GO:0019953] locus:2183424;,locus:4515103537; AT5G07560,AT5G07571 glycine-rich protein 20 NA NA NA NA NA NA NA ENOG411EGU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF751) NA NA NA NA NA NA NA ENOG411EGU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor NA NA NA NA NA NA NA ENOG411EGU1 MDC12.12 Q9FMK8 Q9FMK8_ARATH At5g63150 16039 At5g63150 mRNA processing [GO:0006397] locus:2161947; AT5G63150 Mitochondrial domain of unknown function (DUF1713) NA NA NA NA NA NA NA ENOG411EGU0 Q3E8F8 Q3E8F8_ARATH Transmembrane protein (Uncharacterized protein At5g46295) 8382 Transmembrane protein (Uncharacterized protein At5g46295) integral component of membrane [GO:0016021] locus:505006675; AT5G46295 NA NA NA NA NA NA NA NA ENOG411EGU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENT NA NA NA NA NA NA NA ENOG411EGU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGU5 GDU5 Q3E965 GDU5_ARATH Protein GLUTAMINE DUMPER 5 FUNCTION: Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. {ECO:0000269|PubMed:20018597, ECO:0000269|Ref.6}. MISCELLANEOUS: Overexpression of GLUTAMINE DUMPER 5 leads to free amino acid levels accumulation and plant size decrease (Ref.6, PubMed:20018597). 14684 Protein GLUTAMINE DUMPER 5 integral component of membrane [GO:0016021]; amino acid transport [GO:0006865]; regulation of amino acid export [GO:0080143] TISSUE SPECIFICITY: Expressed in the vascular tissues. Also detected in guard cells. {ECO:0000269|PubMed:20018597, ECO:0000269|Ref.6}. locus:2149448; AT5G24920 NA NA NA NA NA NA NA NA ENOG411EGU4 MXA21.16 Q6NM41,Q29QA1,F4J1T5,A8MRC2 Q6NM41_ARATH,Q29QA1_ARATH,F4J1T5_ARATH,A8MRC2_ARATH At5g38180 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein),At5g38195 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Protease inhibitor/seed storage/lipid transfer protein family protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 10836,10409,11424,10664 At5g38180 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein),At5g38195 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Protease inhibitor/seed storage/lipid transfer protein family protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein lipid transport [GO:0006869],peptidase activity [GO:0008233]; lipid transport [GO:0006869] locus:2176722;,locus:505006663;,locus:4010713787;,locus:4010714028; AT5G38180,AT5G38195,AT3G29152,AT5G38197 seed storage NA NA NA NA NA NA NA ENOG411EJS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAXNEB protein NA NA NA NA NA NA NA ENOG411EJS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant specific eukaryotic initiation factor 4B NA NA NA NA NA NA NA ENOG411EJS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: exportin 4 NA NA NA NA NA NA NA ENOG411EJS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates NA NA NA NA NA NA NA ENOG411EJS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol-specific phospholipase C X domain NA NA NA NA NA NA NA ENOG411EJS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA polymerase III 62 kDa polypeptide (RNA NA NA NA NA NA NA NA ENOG411EFCI Q9SX32,Q9C659 Q9SX32_ARATH,Q9C659_ARATH F24J5.7 (Transmembrane protein),Uncharacterized protein F28B23.18 16544,18658 F24J5.7 (Transmembrane protein),Uncharacterized protein F28B23.18 integral component of membrane [GO:0016021] locus:2026915;,locus:2028776; AT1G68700,AT1G26140 NA NA NA NA NA NA NA NA ENOG411EJSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0133100 protein (Fragment) Q0JQX8,A0A0P0UXX4 Q0JQX8_ORYSJ,A0A0P0UXX4_ORYSJ Os01g0133100 Os01g0133100 OSNPB_010133100,Os01g0133100 OSNPB_010133100 ENOG411EJSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: exportin 4 NA NA NA NA NA NA NA ENOG411DYA8 Q9LFS3 Q9LFS3_ARATH 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (At5g16010/F1N13_150) (Steroid 5alpha-reductase-like protein) R-ATH-193048; 30127 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (At5g16010/F1N13_150) (Steroid 5alpha-reductase-like protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; lipid metabolic process [GO:0006629] locus:2146112; AT5G16010 3-oxo-5-alpha-steroid 4-dehydrogenase Os07g0162100 protein (Steroid 5alpha-reductase-like protein) Q8H539 Q8H539_ORYSJ OJ1714_H10.144 Os07g0162100 OSNPB_070162100 ENOG411DYA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EJSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Calcineurin binding protein 1 NA NA NA NA NA NA NA ENOG411EJSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Small nuclear RNA activating complex (SNAPc) subunit SNAP43 NA NA NA NA NA NA NA ENOG411EJSJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C3HC zinc finger-like NA NA NA NA NA NA NA ENOG411EJSK Q9FGR1 Q9FGR1_ARATH Dentin sialophosphoprotein-like protein (Uncharacterized protein At5g52530) 92418 Dentin sialophosphoprotein-like protein (Uncharacterized protein At5g52530) locus:2184635; AT5G52530 Inherit from KOG: Desumoylating isopeptidase NA NA NA NA NA NA NA ENOG411EJST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized ACR COG1678 NA NA NA NA NA NA NA ENOG411EJSU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Nucleolar protein NA NA NA NA NA NA NA ENOG411DYAX BHLH70 O81037,I2FGF6,A0A1P8B1G0,A0A1P8B1B3 BH070_ARATH,I2FGF6_ARATH,A0A1P8B1G0_ARATH,A0A1P8B1B3_ARATH Transcription factor bHLH70 (Basic helix-loop-helix protein 70) (AtbHLH70) (bHLH 70) (Transcription factor EN 13) (bHLH transcription factor bHLH070),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein (Basic helix-loop-helix DNA-binding superfamily protein),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43001,41482,37762,34539 Transcription factor bHLH70 (Basic helix-loop-helix protein 70) (AtbHLH70) (bHLH 70) (Transcription factor EN 13) (bHLH transcription factor bHLH070),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein (Basic helix-loop-helix DNA-binding superfamily protein),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2044387; AT2G46810 Transcription factor NA NA NA NA NA NA NA ENOG411DYAQ PCMP-E61 Q9LND4 PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140, mitochondrial 62378 Pentatricopeptide repeat-containing protein At1g06140, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2198811; AT1G06140 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DYAK AAE18 Q84P17 AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal (EC 6.2.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants are resistant to 2,4-DB. {ECO:0000269|PubMed:19043666}. Resistant to 24-dichlorophenoxybutyric acid (24 DB) a compound that is metabolized to active auxin. When grown in the presence of pro-auxins roots are shorter than normal. Insensitive to pro-auxins-J. Bussell-2009 FUNCTION: May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. {ECO:0000269|PubMed:19043666}. ARA:AT1G55320-MONOMER; R-ATH-77111; 6.2.1.- 81135 Probable acyl-activating enzyme 18, peroxisomal (EC 6.2.1.-) peroxisome [GO:0005777]; ligase activity [GO:0016874]; auxin metabolic process [GO:0009850]; fatty acid metabolic process [GO:0006631] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12805634}. locus:2035721; AT1G55320 AMP-binding enzyme Os03g0805500 protein (Fragment) A0A0P0W4Z8 A0A0P0W4Z8_ORYSJ Os03g0805500 OSNPB_030805500 ENOG411DYAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0134033 protein A0A0P0XS92 A0A0P0XS92_ORYSJ Os10g0134033 OSNPB_100134033 ENOG411DYAG A0A1P8AQI9,A0A1P8AUP4,A0A1P8AUP7,F4I983,F4I982,F4HSW8 A0A1P8AQI9_ARATH,A0A1P8AUP4_ARATH,A0A1P8AUP7_ARATH,F4I983_ARATH,F4I982_ARATH,F4HSW8_ARATH GYF domain-containing protein 150123,152238,149816,166270,165685,165435 GYF domain-containing protein chloroplast [GO:0009507] locus:2032447;,locus:2015989; AT1G24300,AT1G27430 GYF domain-containing protein NA NA NA NA NA NA NA ENOG411DYAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A29 (Alpha-expansin-29) (OsEXP29) (OsEXPA29) (OsaEXPa1.14) Q4PR39 EXP29_ORYSJ EXPA29 EXP29 Os06g0718100 LOC_Os06g50400 OJ1540_H01.14 P0541C02.22 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411ECKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECKN Q9LMI1 Q9LMI1_ARATH Ribosomal protein L1p/L10e family (T2D23.8 protein) 28715 Ribosomal protein L1p/L10e family (T2D23.8 protein) 90S preribosome [GO:0030686]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; ribosome [GO:0005840]; RNA binding [GO:0003723]; maturation of LSU-rRNA [GO:0000470] locus:2202260; AT1G06380 Ribosomal protein L1p/L10e family NA NA NA NA NA NA NA ENOG411DSZ6 Q8GWL4,A0A1P8BHA8,A0A1P8BH91,F4JZ19 Q8GWL4_ARATH,A0A1P8BHA8_ARATH,A0A1P8BH91_ARATH,F4JZ19_ARATH Uncharacterized protein At5g66050 (Uncharacterized protein At5g66050/K2A18_12) (Wound-responsive family protein),Wound-responsive family protein 37220,35180,35606,27480 Uncharacterized protein At5g66050 (Uncharacterized protein At5g66050/K2A18_12) (Wound-responsive family protein),Wound-responsive family protein nuclease activity [GO:0004518] locus:2156842; AT5G66050 Pfam:DUF151 NA NA NA NA NA NA NA ENOG411DSW8 MTP10,MTP9 Q0WU02,Q9SAJ7,A0A1P8AN90,A0A1P8ASU5,F4IF62 MTP10_ARATH,MTP9_ARATH,A0A1P8AN90_ARATH,A0A1P8ASU5_ARATH,F4IF62_ARATH Metal tolerance protein 10 (AtMTP10),Metal tolerance protein 9 (AtMTP9),Cation efflux family protein FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. 49109,45561,39716,35731,46949 Metal tolerance protein 10 (AtMTP10),Metal tolerance protein 9 (AtMTP9),Cation efflux family protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; cation transmembrane transporter activity [GO:0008324],integral component of membrane [GO:0016021]; cation transmembrane transporter activity [GO:0008324],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cation transmembrane transporter activity [GO:0008324] locus:2032830;,locus:2206440; AT1G16310,AT1G79520 metal tolerance protein Metal tolerance protein 7 (OsMTP7),Os01g0130000 protein (Fragment) Q9LDU0,A0A0P0UXI6 MTP7_ORYSJ,A0A0P0UXI6_ORYSJ MTP7 Os01g0130000 LOC_Os01g03914 OsJ_00239 P0408F06.28 P0504H10.3,Os01g0130000 OSNPB_010130000 FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. ENOG411DSW9 ALS P17597 ILVB_ARATH Acetolactate synthase, chloroplastic (AtALS) (EC 2.2.1.6) (Acetohydroxy-acid synthase) (Protein CHLORSULFURON RESISTANT 1) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22430369}. FUNCTION: Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. {ECO:0000269|PubMed:10386618, ECO:0000269|PubMed:16665813, ECO:0000269|PubMed:16667374, ECO:0000269|PubMed:16668488, ECO:0000269|PubMed:2336405, ECO:0000269|PubMed:8913312, ECO:0000269|PubMed:9355748, ECO:0000269|PubMed:9677339, ECO:0000269|Ref.9}. PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.; PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4. ARA:AT3G48560-MONOMER; 2.2.1.6; 2.2.1.6 72585 Acetolactate synthase, chloroplastic (AtALS) (EC 2.2.1.6) (Acetohydroxy-acid synthase) (Protein CHLORSULFURON RESISTANT 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; acetolactate synthase activity [GO:0003984]; flavin adenine dinucleotide binding [GO:0050660]; magnesium ion binding [GO:0000287]; thiamine pyrophosphate binding [GO:0030976]; isoleucine biosynthetic process [GO:0009097]; response to herbicide [GO:0009635]; valine biosynthetic process [GO:0009099] locus:2114525; AT3G48560 acetolactate synthase Acetolactate synthase 1, chloroplastic (EC 2.2.1.6) (Acetohydroxy-acid synthase 1),Probable acetolactate synthase 2, chloroplastic (EC 2.2.1.6) (Acetohydroxy-acid synthase 2),Os04g0389100 protein (Fragment),Os02g0510200 protein (Fragment) Q6K2E8,Q7XKQ8,A0A0P0W9X0,A0A0P0VJL5 ILVB1_ORYSJ,ILVB2_ORYSJ,A0A0P0W9X0_ORYSJ,A0A0P0VJL5_ORYSJ ALS1 Os02g0510200 LOC_Os02g30630 OSJNBa0052M16.38,ALS2 Os04g0389800 LOC_Os04g32010 OSJNBa0053B21.13,Os04g0389100 OSNPB_040389100,Os02g0510200 OSNPB_020510200 MISCELLANEOUS: Acetolactate synthase is the target enzyme for sulfonylurea and imidazolinone herbicides. ENOG411DSW2 A0A1P8AYU4,A8MRC1 A0A1P8AYU4_ARATH,A8MRC1_ARATH Asparagine synthase family protein 66623,67649 Asparagine synthase family protein asparagine synthase (glutamine-hydrolyzing) activity [GO:0004066]; asparagine biosynthetic process [GO:0006529],asparagine synthase (glutamine-hydrolyzing) activity [GO:0004066]; protein homodimerization activity [GO:0042803]; asparagine biosynthetic process [GO:0006529] locus:4010713612; AT2G03667 asparagine Os12g0574900 protein A0A0P0YCS6 A0A0P0YCS6_ORYSJ Os12g0574900 OSNPB_120574900 ENOG411DSW3 MWD22.7 Q6NPC9,A0A1P8BAK4 BIN3D_ARATH,A0A1P8BAK4_ARATH Probable RNA methyltransferase At5g51130 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein FUNCTION: Probable RNA methyltransferase. {ECO:0000250}. 2.1.1.- 36597,31784 Probable RNA methyltransferase At5g51130 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2176217; AT5G51130 Bicoid-interacting protein 3 (Bin3) Bicoid-interacting protein 3-like (Os08g0540500 protein) (cDNA clone:002-105-H09, full insert sequence) Q6ZIU7 Q6ZIU7_ORYSJ Os08g0540500 Os08g0540500 OJ1211_G06.6 OsJ_28122 OSNPB_080540500 ENOG411DSW0 Q94A40,Q9SJT9 COPA1_ARATH,COPA2_ARATH Coatomer subunit alpha-1 (Alpha-coat protein 1) (Alpha-COP 1),Coatomer subunit alpha-2 (Alpha-coat protein 2) (Alpha-COP 2) FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811434; 136566,136467 Coatomer subunit alpha-1 (Alpha-coat protein 1) (Alpha-COP 1),Coatomer subunit alpha-2 (Alpha-coat protein 2) (Alpha-COP 2) COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasma membrane [GO:0005886]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2036823;,locus:2050064; AT1G62020,AT2G21390 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles which further mediate biosynthetic protein transport from the ER via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) Coatomer subunit alpha-2 (Alpha-coat protein 2) (Alpha-COP 2),Coatomer subunit alpha-1 (Alpha-coat protein 1) (Alpha-COP 1),Coatomer subunit alpha-3 (Alpha-coat protein 3) (Alpha-COP 3),Os09g0127800 protein (Fragment),Os03g0711500 protein (Fragment),Os03g0711400 protein (Fragment) Q9AUR7,Q9AUR8,Q0J3D9,A0A0P0XIM9,A0A0P0W2T2,A0A0P0XJM4,A0A0N7KHX4 COPA2_ORYSJ,COPA1_ORYSJ,COPA3_ORYSJ,A0A0P0XIM9_ORYSJ,A0A0P0W2T2_ORYSJ,A0A0P0XJM4_ORYSJ,A0A0N7KHX4_ORYSJ Os03g0711500 LOC_Os03g50350 OsJ_011823 OSJNBb0033N16.11,Os03g0711400 LOC_Os03g50340 OsJ_011822 OSJNBb0033N16.10,Os09g0127800 LOC_Os09g04110 OsJ_027299,Os09g0127800 OSNPB_090127800,Os03g0711500 OSNPB_030711500,Os03g0711400 OSNPB_030711400 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. ENOG411DSW1 PAA1,PAA2 O81146,O81147,A0A1P8B073,F4IIA5 PSA6A_ARATH,PSA6B_ARATH,A0A1P8B073_ARATH,F4IIA5_ARATH Proteasome subunit alpha type-6-A (EC 3.4.25.1) (20S proteasome subunit alpha A-1) (Proteasome component 1) (Proteasome subunit alpha type-1),Proteasome subunit alpha type-6-B (EC 3.4.25.1) (20S proteasome subunit alpha A-2) (Proteasome subunit alpha type-1),Proteasome subunit alpha type (EC 3.4.25.1) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU000551}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 27294,27350,22770,24456 Proteasome subunit alpha type-6-A (EC 3.4.25.1) (20S proteasome subunit alpha A-1) (Proteasome component 1) (Proteasome subunit alpha type-1),Proteasome subunit alpha type-6-B (EC 3.4.25.1) (20S proteasome subunit alpha A-2) (Proteasome subunit alpha type-1),Proteasome subunit alpha type (EC 3.4.25.1) cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; vacuolar membrane [GO:0005774]; threonine-type endopeptidase activity [GO:0004298]; response to zinc ion [GO:0010043]; ubiquitin-dependent protein catabolic process [GO:0006511],cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; structural constituent of ribosome [GO:0003735]; threonine-type endopeptidase activity [GO:0004298]; ribosome assembly [GO:0042255]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous low levels, higher expression in siliques and flowers. {ECO:0000269|PubMed:9611183}. locus:2157106;,locus:2064727; AT5G35590,AT2G05840 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity Proteasome subunit alpha type-6 (EC 3.4.25.1) (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1) Q9LSU3 PSA6_ORYSJ PAA1 Os03g0180400 LOC_Os03g08280 OsJ_09653 OSJNBa0050H14.19 OSJNBb0076N15.5 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity). {ECO:0000250}. ENOG411DSW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31) Q0J5A1 Q0J5A1_ORYSJ Os08g0451800 Os08g0451800 OSNPB_080451800 ENOG411DSW7 Q9LSC2,Q9SSQ6,Q8LDB7 Y3589_ARATH,Q9SSQ6_ARATH,Q8LDB7_ARATH PTI1-like tyrosine-protein kinase At3g15890 (EC 2.7.10.2),F6D8.24 protein (Protein kinase superfamily protein),Protein kinase superfamily protein (Somatic embryogenesis receptor-like kinase, putative) 2.7.10.2 40955,39658,39868 PTI1-like tyrosine-protein kinase At3g15890 (EC 2.7.10.2),F6D8.24 protein (Protein kinase superfamily protein),Protein kinase superfamily protein (Somatic embryogenesis receptor-like kinase, putative) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; non-membrane spanning protein tyrosine kinase activity [GO:0004715]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2093900;,locus:2035099; AT3G15890,AT1G52540 PTI1-like tyrosine-protein kinase Os02g0186500 protein (Receptor protein kinase PERK1-like protein) (cDNA clone:J013127K13, full insert sequence) (cDNA clone:J013132O11, full insert sequence),Os06g0654600 protein Q6ZIG4,A0A0P0WZH7 Q6ZIG4_ORYSJ,A0A0P0WZH7_ORYSJ Os02g0186500 OJ1073_F05.16 OJ1115_B01.27 OSNPB_020186500,Os06g0654600 OSNPB_060654600 ENOG411DSW4 Q93VB4 Q93VB4_ARATH Putative zinc finger protein (Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein) 47493 Putative zinc finger protein (Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein) cytoplasm [GO:0005737] locus:2137844; AT4G02220 Programmed cell death Os03g0300200 protein (Programmed cell death protein) (Programmed cell death protein 2, C-terminal domain containing protein, expressed) (cDNA clone:J033082G07, full insert sequence) Q10MP9 Q10MP9_ORYSJ LOC_Os03g18830 Os03g0300200 OsJ_10516 OSNPB_030300200 ENOG411DSW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os12g0161100 protein A0A0P0Y7A8 A0A0P0Y7A8_ORYSJ Os12g0161100 OSNPB_120161100 ENOG411E8UU Q8LB29,A0A1P8BAC5 Q8LB29_ARATH,A0A1P8BAC5_ARATH At5g63905 (Transmembrane protein) (Uncharacterized protein At5g63905),Transmembrane protein 8477,11456 At5g63905 (Transmembrane protein) (Uncharacterized protein At5g63905),Transmembrane protein integral component of membrane [GO:0016021] locus:505006712; AT5G63905 NA NA NA NA NA NA NA NA ENOG411DSWZ Q8VZM2 Q8VZM2_ARATH Transcription elongation factor (TFIIS) family protein (Uncharacterized protein At4g24200) 107584 Transcription elongation factor (TFIIS) family protein (Uncharacterized protein At4g24200) elongin complex [GO:0070449]; mitochondrion [GO:0005739]; translation elongation factor activity [GO:0003746]; transcription elongation from RNA polymerase II promoter [GO:0006368] locus:2135907; AT4G24200 NA Os06g0631300 protein (Fragment) A0A0P0WZF6 A0A0P0WZF6_ORYSJ Os06g0631300 OSNPB_060631300 ENOG411DSWX RPL15 P25873 RK15_ARATH 50S ribosomal protein L15, chloroplastic (CL15) 29707 50S ribosomal protein L15, chloroplastic (CL15) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid large ribosomal subunit [GO:0000311]; structural constituent of ribosome [GO:0003735]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:2092155; AT3G25920 ribosomal protein L15 50S ribosomal protein L15, chloroplast, putative, expressed (Os03g0219900 protein) Q10PV6 Q10PV6_ORYSJ Os03g0219900 LOC_Os03g12020 Os03g0219900 OsJ_09949 OSNPB_030219900 ENOG411DSWY F18E5.190 O65422,A0A1P8B7M3,F4I7E7 O65422_ARATH,A0A1P8B7M3_ARATH,F4I7E7_ARATH Organic solute transporter ostalpha protein (DUF300) (Uncharacterized protein AT4g21570) (Uncharacterized protein F17L22.30) (Uncharacterized protein F18E5.190),Organic solute transporter ostalpha protein (DUF300) 33994,37540,34168 Organic solute transporter ostalpha protein (DUF300) (Uncharacterized protein AT4g21570) (Uncharacterized protein F17L22.30) (Uncharacterized protein F18E5.190),Organic solute transporter ostalpha protein (DUF300) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transport [GO:0006810],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transport [GO:0006810] locus:2119672;,locus:2202104; AT4G21570,AT1G11200 Pfam:DUF300 Os07g0506000 protein (cDNA clone:J013160E09, full insert sequence) (cDNA clone:J033118N22, full insert sequence) Q8H3H8 Q8H3H8_ORYSJ Os07g0506000 OsJ_24375 OSJNBb0062D12.107 OSNPB_070506000 ENOG411DSWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0298400 protein (Putative typical P-type R2R3 Myb protein) (cDNA, clone: J065186D02, full insert sequence) Q93V35 Q93V35_ORYSJ Os01g0298400 OsJ_01424 OSJNBa0025P13.33 OSNPB_010298400 P0487H02.11 ENOG411DSWS SOX Q9S850,A8MRF8,F4JBZ5 SUOX_ARATH,A8MRF8_ARATH,F4JBZ5_ARATH Sulfite oxidase (EC 1.8.3.1) (Moco-containing protein AtMCP) (At-SO) (AtSOX),Sulfite oxidase FUNCTION: Probably involved in sulfite oxidative detoxification. PATHWAY: Energy metabolism; sulfur metabolism. R-ATH-1614517; 1.8.3.1; 1.8.3.1 43329,26645,32682 Sulfite oxidase (EC 1.8.3.1) (Moco-containing protein AtMCP) (At-SO) (AtSOX),Sulfite oxidase mitochondrion [GO:0005739]; peroxisome [GO:0005777]; molybdenum ion binding [GO:0030151]; sulfite oxidase activity [GO:0008482]; chlorophyll metabolic process [GO:0015994]; nitrate assimilation [GO:0042128]; response to sulfur dioxide [GO:0010477]; sulfur compound metabolic process [GO:0006790],molybdenum ion binding [GO:0030151]; oxidoreductase activity [GO:0016491]; nitrate assimilation [GO:0042128] locus:2078683; AT3G01910 sulfite oxidase Moco containing protein (Moco containing protein(OsMCP)) (Os08g0530400 protein),Os08g0530400 protein (Fragment) Q8LP96,A0A0P0XI01 Q8LP96_ORYSJ,A0A0P0XI01_ORYSJ OsMCP Os08g0530400 OJ1770_H02.34 OJ1789_C07.13 OsJ_28048 OSNPB_080530400,Os08g0530400 OSNPB_080530400 ENOG411DSWP HEXO3,HEXO1 Q8L7S6,A7WM73 HEXO3_ARATH,HEXO1_ARATH Beta-hexosaminidase 3 (EC 3.2.1.52) (Beta-GlcNAcase 3) (Beta-N-acetylhexosaminidase 3) (Beta-hexosaminidase 1) (AtHEX1) (N-acetyl-beta-glucosaminidase 3),Beta-hexosaminidase 1 (EC 3.2.1.52) (Beta-GlcNAcase 1) (Beta-N-acetylhexosaminidase 1) (Beta-hexosaminidase 2) (AtHEX2) (N-acetyl-beta-glucosaminidase 1) DISRUPTION PHENOTYPE: Reduced amounts of paucimannosidic N-glycans-containing glycoproteins in roots and leaves. {ECO:0000269|PubMed:21252225}.,DISRUPTION PHENOTYPE: Reduced amounts of paucimannosidic N-glycans-containing glycoproteins in roots and, to a lower extent, in leaves. {ECO:0000269|PubMed:21252225}. FUNCTION: Has a broad substrate specificity. Can use synthetic substrates such as pyridylaminated chitotriose, p-nitrophenyl-beta-N-acetylglucosaminide, p-nitrophenyl-2-acetamido-2-deoxy-beta-D-glucopyranoside (pNP-GlcNAc), p-nitrophenyl-2-acetamido-2-deoxy-beta-D-galactopyranoside (pNP-GalNAc), 4-methylumbelliferyl-2-acetamido-2-deoxy-beta-D-glucopyranoside (MU-GlcNAc), and 4-methylumbelliferyl-6-sulfo-2-acetamido-2-deoxy-beta-D-glucopyranoside (MU-GlcNAc-6SO(4)) as substrates. Removes terminal GlcNAc residues from alpha1,3- and alpha1,6-mannosyl branches of biantennary N-glycans without any strict branch preference. Required for the presence of paucimannosidic N-glycans in glycoproteins of roots and leaves. {ECO:0000269|PubMed:17636254, ECO:0000269|PubMed:17644627, ECO:0000269|PubMed:21252225}.,FUNCTION: Has a broad substrate specificity. Can use synthetic substrates such as pyridylaminated chitotriose, pyridylaminated chitobiose, p-nitrophenyl-beta-N-acetylglucosaminide, p-nitrophenyl-2-acetamido-2-deoxy-beta-D-glucopyranoside (pNP-GlcNAc), p-nitrophenyl-2-acetamido-2-deoxy-beta-D-galactopyranoside (pNP-GalNAc), 4-methylumbelliferyl-2-acetamido-2-deoxy-beta-D-glucopyranoside (MU-GlcNAc), and 4-methylumbelliferyl-6-sulfo-2-acetamido-2-deoxy-beta-D-glucopyranoside (MU-GlcNAc-6SO(4)) as substrates. Removes terminal GlcNAc residues from alpha1,3- and alpha1,6-mannosyl branches of biantennary N-glycans without any strict branch preference. Required for the presence of paucimannosidic N-glycans in glycoproteins of roots and, to a lower extent, of leaves. {ECO:0000269|PubMed:17636254, ECO:0000269|PubMed:17644627, ECO:0000269|PubMed:21252225}. ARA:AT1G65590-MONOMER;,ARA:AT3G55260-MONOMER; R-ATH-1660662;R-ATH-2022857;R-ATH-2024101;R-ATH-2160916;R-ATH-6798695; 3.2.1.52; 3.2.1.52 60014,61230 Beta-hexosaminidase 3 (EC 3.2.1.52) (Beta-GlcNAcase 3) (Beta-N-acetylhexosaminidase 3) (Beta-hexosaminidase 1) (AtHEX1) (N-acetyl-beta-glucosaminidase 3),Beta-hexosaminidase 1 (EC 3.2.1.52) (Beta-GlcNAcase 1) (Beta-N-acetylhexosaminidase 1) (Beta-hexosaminidase 2) (AtHEX2) (N-acetyl-beta-glucosaminidase 1) cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; beta-N-acetylhexosaminidase activity [GO:0004563]; hexosaminidase activity [GO:0015929]; N-acetyl-beta-D-galactosaminidase activity [GO:0102148]; carbohydrate metabolic process [GO:0005975],cytosol [GO:0005829]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; beta-N-acetylhexosaminidase activity [GO:0004563]; hexosaminidase activity [GO:0015929]; N-acetyl-beta-D-galactosaminidase activity [GO:0102148]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17644627}. locus:2034147;,locus:2100706; AT1G65590,AT3G55260 beta-hexosaminidase Beta-hexosaminidase (EC 3.2.1.52),Os05g0115900 protein (Fragment) Q5WMR0,Q65XA2,Q5JLX3,A0A0N7KK17 Q5WMR0_ORYSJ,Q65XA2_ORYSJ,Q5JLX3_ORYSJ,A0A0N7KK17_ORYSJ Os05g0415700 OJ1123_C08.10 OSNPB_050415700,Os05g0115900 Os05g0115900 OJ1654_B10.16 OSNPB_050115900 P0496H07.6,Os01g0891000 Os01g0891000 B1078G07.2 OsJ_04367 OSNPB_010891000,Os05g0115900 OSNPB_050115900 ENOG411DSWQ HO1 O48782 HMOX1_ARATH Heme oxygenase 1, chloroplastic (AtHO1) (EC 1.14.14.18) (Protein GENOMES UNCOUPLED 2) (Protein REVERSAL OF THE DET PHENOTYPE 4) DISRUPTION PHENOTYPE: Long hypocotyl, incomplete chloroplast and leaf development, lack of photoreversible phytochromes and lack of phytochromobilin, the phytochrome chromophore. No cotyledon expansion in response to bright-red light. Increased levels of jasmonate (JA) and constitutive expression of JA-inducible defense genes. Increased sensitivity to salt stress and no acclimation response to salinity. {ECO:0000269|PubMed:10072395, ECO:0000269|PubMed:10339624, ECO:0000269|PubMed:11135121, ECO:0000269|PubMed:12232145, ECO:0000269|PubMed:12324588, ECO:0000269|PubMed:12359912, ECO:0000269|PubMed:16428602, ECO:0000269|PubMed:17567636, ECO:0000269|PubMed:20979354, ECO:0000269|PubMed:21205037, ECO:0000269|PubMed:7690685}. HY6 gene; elongated hypocotyl like hy1 but more yellow and etiolated in appearance; increased apical dominance and reduced leaf size; exhibits many pleiotropic effects.,In double mutant seedlings grown on CPTA a partial rescue of the bps1 phenotype was observed.,Express nuclear-encoded Lhcb and RbcS transcripts in the absence of chloroplast development.,Long hypocotyl phenotypes under white light.,No visible phenotype when grown in the dark. Dwarf; Pale green; Long hypocotyl; Slow growth and small, chlorotic leaves under continuous light-R. Vierstra-1999 FUNCTION: Key enzyme in the synthesis of the chromophore of the phytochrome family of plant photoreceptors. Catalyzes the opening of the heme ring to form the open-chain tetrapyrrole biliverdin IX with the release of iron and carbon monoxide (CO). Produces specifically the biliverdin IX-alpha isomer. Can form complex with heme, is ferredoxin-dependent and its activity is increased in the presence of ascorbate. Plays a role in salt acclimation signaling. May affect the plastid-to-nucleus signaling pathway by perturbing tetrapyrrole synthesis. The plastid-to-nucleus signal plays an important role in the coordinated expression of both nuclear- and chloroplast-localized genes that encode photosynthesis-related proteins. {ECO:0000269|PubMed:10072395, ECO:0000269|PubMed:10339624, ECO:0000269|PubMed:11135121, ECO:0000269|PubMed:11172074, ECO:0000269|PubMed:12232145, ECO:0000269|PubMed:12324588, ECO:0000269|PubMed:12481078, ECO:0000269|PubMed:16428602, ECO:0000269|PubMed:19860740, ECO:0000269|PubMed:20979354, ECO:0000269|PubMed:21205037, ECO:0000269|PubMed:7690685}. ARA:AT2G26670-MONOMER;MetaCyc:AT2G26670-MONOMER; 1.14.14.18 32691 Heme oxygenase 1, chloroplastic (AtHO1) (EC 1.14.14.18) (Protein GENOMES UNCOUPLED 2) (Protein REVERSAL OF THE DET PHENOTYPE 4) chloroplast [GO:0009507]; heme binding [GO:0020037]; heme oxygenase (decyclizing) activity [GO:0004392]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; cellular response to UV-C [GO:0071494]; chloroplast-nucleus signaling pathway [GO:0010019]; flavonoid biosynthetic process [GO:0009813]; heme oxidation [GO:0006788]; photosynthesis [GO:0015979]; phytochromobilin biosynthetic process [GO:0010024]; regulation of meristem growth [GO:0010075]; regulation of stomatal movement [GO:0010119] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10339624, ECO:0000269|PubMed:16428602, ECO:0000269|PubMed:20979354}. locus:2005513; AT2G26670 Heme oxygenase Heme oxygenase 1, chloroplastic (EC 1.14.14.18) (Protein PHOTOPERIODIC SENSITIVITY 5) Q69XJ4 HMOX1_ORYSJ HO1 HY1 SE5 Os06g0603000 LOC_Os06g40080 OsJ_21897 P0486H12.31 DISRUPTION PHENOTYPE: Pale green and very early flowering phenotype and complete deficiency in photoperiodic response. Lack of photoreversible phytochromes and responses of coleoptile elongation by light pulses. {ECO:0000269|PubMed:10849355, ECO:0000269|PubMed:19675157}. FUNCTION: Catalyzes the opening of the heme ring to form the open-chain tetrapyrrole biliverdin IX with the release of iron and carbon monoxide (CO). Is a key enzyme in the synthesis of the chromophore of the phytochrome family of plant photoreceptors. Essential for photoperiod response and repression of flowering through cytochromes that inhibit flowering by affecting both HD1 and EHD1 flowering pathways. {ECO:0000269|PubMed:10849355, ECO:0000269|PubMed:19675157}. ENOG411DSWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Os01g0835700 protein (Zinc finger CONSTANS-like protein) (cDNA clone:002-154-E04, full insert sequence) Q5QMF4 Q5QMF4_ORYSJ Os01g0835700 OsJ_03992 OSNPB_010835700 P0506B12.21 ENOG411DSWW NQR Q9FX95,F4I3C3 Q9FX95_ARATH,F4I3C3_ARATH ARP protein (ARP protein (REF)) (At1g49670),ARP protein (REF) ARA:AT1G49670-MONOMER; 67944,70542 ARP protein (ARP protein (REF)) (At1g49670),ARP protein (REF) oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270],mitochondrion [GO:0005739]; peroxisome [GO:0005777]; oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270]; response to oxidative stress [GO:0006979] locus:2012166; AT1G49670 Zinc-binding alcohol dehydrogenase domain-containing protein Os09g0459800 protein (Putative NADPH oxidoreductase homolog),Os09g0459800 protein,Os09g0459800 protein (Fragment) Q67J16,A0A0N7KQX9,A0A0P0XPE1 Q67J16_ORYSJ,A0A0N7KQX9_ORYSJ,A0A0P0XPE1_ORYSJ B1045B05.39-1 Os09g0459800 OsJ_29644 OSJNBa0054F02.17-1 OSNPB_090459800,Os09g0459800 OSNPB_090459800 ENOG411DSWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity NA NA NA NA NA NA NA ENOG411DSWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0203500 protein A0A0P0VG61 A0A0P0VG61_ORYSJ Os02g0203500 OSNPB_020203500 ENOG411DSWJ B3DNP3 B3DNP3_ARATH At3g27180 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) Tyrosine metabolism (00350),Histidine metabolism (00340),Microbial metabolism in diverse environments (01120),Polycyclic aromatic hydrocarbon degradation (00624) 57846 At3g27180 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) RNA methyltransferase activity [GO:0008173]; RNA processing [GO:0006396] locus:2095128; AT3G27180 Conserved hypothetical protein 95 Os01g0920300 protein (Fragment) A0A0P0VC63,A0A0N7KEB2 A0A0P0VC63_ORYSJ,A0A0N7KEB2_ORYSJ Os01g0920300 OSNPB_010920300 ENOG411DSWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Removes the N-terminal methionine from nascent proteins (By similarity) Methionine aminopeptidase 2 (MAP 2) (MetAP 2) (EC 3.4.11.18) (Peptidase M),Methionine aminopeptidase (EC 3.4.11.18) (Fragment) A0A0P0XJS0,A0A0P0YCB1 A0A0P0XJS0_ORYSJ,A0A0P0YCB1_ORYSJ Os08g0542000 OSNPB_080542000,Os12g0628500 OSNPB_120628500 FUNCTION: Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|HAMAP-Rule:MF_03175, ECO:0000256|SAAS:SAAS00684756}.; FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}.,FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. ENOG411DSWH PECT1 Q9ZVI9 PECT1_ARATH Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14) (CTP:phosphoethanolamine cytidylyltransferase) (Phosphorylethanolamine cytidylyltransferase 1) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:17189343}. ethanolamine-phosphate cytidylyltransferase activity is reduced to 74%. Seedling phosphatidylethanolamine content is reduced by 20%. Dwarf when grown at 8oC. Earlier senescence of cotyladons and mature leaves. Pale green and smaller seeds. Delay in embryo maturation. Reduced fertility.,embryo lethal. Embryos do not develop beyond the octant stage. Embryo defective; Preglobular-I. Nishida-2007 FUNCTION: Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine. Essential for early embryonic development. {ECO:0000269|PubMed:17189343}. PATHWAY: Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from ethanolamine: step 2/3. ARA:AT2G38670-MONOMER;MetaCyc:AT2G38670-MONOMER; R-ATH-1483213; 2.7.7.14 46978 Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14) (CTP:phosphoethanolamine cytidylyltransferase) (Phosphorylethanolamine cytidylyltransferase 1) integral component of mitochondrial outer membrane [GO:0031307]; mitochondrion [GO:0005739]; ethanolamine-phosphate cytidylyltransferase activity [GO:0004306]; phosphatidylethanolamine biosynthetic process [GO:0006646] TISSUE SPECIFICITY: Expressed in root tip, lateral root primordia, leaves, shoot apex, stem vascular bundles, pollen and embryos. {ECO:0000269|PubMed:17189343}. locus:2064123; AT2G38670 Ethanolamine-phosphate Cytidylyltransferase family protein, expressed (Os10g0387000 protein),Os08g0224800 protein Q338R8,A0A0P0XD69 Q338R8_ORYSJ,A0A0P0XD69_ORYSJ LOC_Os10g24810 Os10g0387000 OSNPB_100387000,Os08g0224800 OSNPB_080224800 ENOG411DSWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA asparagine synthetase Asparagine synthetase [glutamine-hydrolyzing] 1 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) Q10MX3 ASNS1_ORYSJ Os03g0291500 LOC_Os03g18130 FUNCTION: Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem. {ECO:0000250}. ENOG411DSWN DTX55 Q9FH21 DTX55_ARATH Protein DETOXIFICATION 55 (AtDTX55) (Multidrug and toxic compound extrusion protein 55) (MATE protein 55) (Protein NOVEL ION CARRIER 3) (Protein NIC3) R-ATH-425366; 54139 Protein DETOXIFICATION 55 (AtDTX55) (Multidrug and toxic compound extrusion protein 55) (MATE protein 55) (Protein NOVEL ION CARRIER 3) (Protein NIC3) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:2155179; AT5G49130 Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) A0A0P0YB54 A0A0P0YB54_ORYSJ Os12g0552600 OSNPB_120552600 ENOG411DSWM Q9ZPH9,O80844 PMTF_ARATH,PMTG_ARATH Probable methyltransferase PMT15 (EC 2.1.1.-),Probable methyltransferase PMT16 (EC 2.1.1.-) 2.1.1.- 72753,72102 Probable methyltransferase PMT15 (EC 2.1.1.-),Probable methyltransferase PMT16 (EC 2.1.1.-) cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2117728;,locus:2050679; AT4G00750,AT2G45750 methyltransferase Os10g0522000 protein (Fragment) A0A0P0XWT2 A0A0P0XWT2_ORYSJ Os10g0522000 OSNPB_100522000 ENOG411DSWB F4IV18 F4IV18_ARATH Dihydroorotate dehydrogenase (DUF3598) 55876 Dihydroorotate dehydrogenase (DUF3598) locus:2042446; AT2G44760 Domain of unknown function (DUF3598) OSJNBb0038F03.15 protein (Os04g0545200 protein) Q7FAI9 Q7FAI9_ORYSJ OSJNBb0038F03.15 Os04g0545200 OSNPB_040545200 ENOG411DSWC SCL1 Q9SDQ3 SCL1_ARATH Scarecrow-like protein 1 (AtSCL1) (GRAS family protein 4) (AtGRAS-4) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 66700 Scarecrow-like protein 1 (AtSCL1) (GRAS family protein 4) (AtGRAS-4) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. locus:2026982; AT1G21450 Scarecrow-like protein Os01g0881500 protein (Putative chitin-inducible gibberellin-responsive protein) (cDNA clone:001-034-C07, full insert sequence) (cDNA clone:J013106L10, full insert sequence) Q8RZQ6 Q8RZQ6_ORYSJ Os01g0881500 Os01g0881500 B1065E10.4 OsJ_04302 OSNPB_010881500 P0018C10.63 ENOG411DSWA RP1 O49562 PDRP1_ARATH Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic (EC 2.7.11.32) (EC 2.7.4.27) (Bifunctional dikinase regulatory protein 1) (AtRP1) (BFRP1) (Pyruvate, Pi dikinase regulatory protein 1) (PPDK RP1) (PPDK regulatory protein 1) FUNCTION: Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation. Dark/light-induced changes in stromal concentrations of the competing ADP and Pi substrates govern the direction of the reaction. In the dark, phosphorylates the catalytic intermediate of PPDK (PPDK-HisP), inactivating it. Light exposure induces the phosphorolysis reaction that reactivates PPDK. Unlike the kinase function which can utilize either Thr or Ser as target, the phosphorylase function has a strict substrate requirement for threonyl phosphate. {ECO:0000269|PubMed:17996018, ECO:0000269|PubMed:21883547}. MISCELLANEOUS: The initial 51 amino acids are sufficient to act as a chloroplast transit peptide and the removal of the next 35 amino acids reduces the strength of interaction with PPDK significantly, which suggested that these residues are important for binding RP1 and may not be part of the transit peptide (PubMed:21883547). 2.7.11.32;2.7.4.27; 2.7.11.32; 2.7.4.27 43684 Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic (EC 2.7.11.32) (EC 2.7.4.27) (Bifunctional dikinase regulatory protein 1) (AtRP1) (BFRP1) (Pyruvate, Pi dikinase regulatory protein 1) (PPDK RP1) (PPDK regulatory protein 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; phosphoprotein phosphatase activity [GO:0004721]; phosphotransferase activity, phosphate group as acceptor [GO:0016776]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in green tissues. {ECO:0000269|PubMed:17996018}. locus:2127413; AT4G21210 Bifunctional serine threonine kinase and phosphorylase involved in the dark light-mediated regulation of PPDK by catalyzing its phosphorylation dephosphorylation. Dark light- induced changes in stromal concentrations of the competing ADP and Pi substrates govern the direction of the reaction. In the dark phosphorylates the catalytic intermediate of PPDK (PPDK-HisP) inactivating it. Light exposure induces the phosphorolysis reaction that reactivates PPDK Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic (EC 2.7.11.32) (EC 2.7.4.27) (Bifunctional dikinase regulatory protein) (BFRP) (Pyruvate, Pi dikinase regulatory protein) (PPDK RP) (PPDK regulatory protein) Q8GVP6 PDRP1_ORYSJ PDRP1 Os07g0530600 LOC_Os07g34640 OsJ_023576 P0681F05.120 FUNCTION: Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation. Dark/light-induced changes in stromal concentrations of the competing ADP and Pi substrates govern the direction of the reaction. In the dark, phosphorylates the catalytic intermediate of PPDK (PPDK-HisP), inactivating it. Light exposure induces the phosphorolysis reaction that reactivates PPDK (By similarity). {ECO:0000250}. ENOG411DSWF IQM5 Q058N0 IQM5_ARATH IQ domain-containing protein IQM5 (IQ motif-containing protein 5) FUNCTION: May be involved in biotic and abiotic stress responses. {ECO:0000250|UniProtKB:O82645}. 56151 IQ domain-containing protein IQM5 (IQ motif-containing protein 5) cytoplasm [GO:0005737]; nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, and at lower levels in stems, flowers and siliques. {ECO:0000269|Ref.4}. locus:2164655; AT5G57010 calmodulin-binding protein Os05g0197300 protein (cDNA clone:002-102-E10, full insert sequence) Q688L4 Q688L4_ORYSJ Os05g0197300 OSNPB_050197300 P0636E04.6 ENOG411DSWG Q9SGE9,F4IDD6 SYFB_ARATH,F4IDD6_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase beta subunit) (PheRS),tRNA synthetase beta subunit family protein ARA:AT1G72550-MONOMER; 6.1.1.20 67543,65960 Phenylalanine--tRNA ligase beta subunit, cytoplasmic (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase beta subunit) (PheRS),tRNA synthetase beta subunit family protein cytosol [GO:0005829]; phenylalanine-tRNA ligase complex [GO:0009328]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phenylalanine-tRNA ligase activity [GO:0004826]; RNA binding [GO:0003723]; phenylalanyl-tRNA aminoacylation [GO:0006432],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phenylalanine-tRNA ligase activity [GO:0004826]; RNA binding [GO:0003723]; phenylalanyl-tRNA aminoacylation [GO:0006432] locus:2030290; AT1G72550 Phenylalanyl-tRNA synthetase beta Os05g0558900 protein (Putative phenylalanyl-tRNA synthetase beta chain (PheRS)) (cDNA clone:J033058I10, full insert sequence) Q6AT40 Q6AT40_ORYSJ Os05g0558900 OSJNBa0001A14.7 OSNPB_050558900 ENOG411DSWD Q9LPD5 Q9LPD5_ARATH SNARE associated Golgi protein family (T12C22.23 protein) (Uncharacterized protein At1g44960) 28223 SNARE associated Golgi protein family (T12C22.23 protein) (Uncharacterized protein At1g44960) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2028270; AT1G44960 TVP38 TMEM64 family membrane protein Os11g0537300 protein A0A0P0Y2Y1 A0A0P0Y2Y1_ORYSJ Os11g0537300 OSNPB_110537300 ENOG411DSWE PPR4,MUK11.12 Q0WMY5,A0A1P8BFG1 PP365_ARATH,A0A1P8BFG1_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic (Maize PPR4 homolog) (AtPPR4),Pentatricopeptide (PPR) repeat-containing protein Embryo defective-D. Meinke-2011 FUNCTION: May play a role in the plastid ribosome biogenesis. {ECO:0000269|PubMed:17041147}. 106740,89909 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic (Maize PPR4 homolog) (AtPPR4),Pentatricopeptide (PPR) repeat-containing protein chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],RNA binding [GO:0003723] locus:2175443; AT5G04810 pentatricopeptide repeat-containing protein At5g04810 Os04g0684500 protein Q0J8W3,A0A0P0WGH2 Q0J8W3_ORYSJ,A0A0P0WGH2_ORYSJ Os04g0684500 Os04g0684500 OSNPB_040684500,Os04g0684500 OSNPB_040684500 ENOG411E8U3 MFB16.10 Q9LUF0 Q9LUF0_ARATH Transmembrane protein 21383 Transmembrane protein integral component of membrane [GO:0016021] locus:2159757;locus:2832456; AT5G50610AT5G50710; NA NA NA NA NA NA NA NA ENOG411DX88 F4JKS7,A0A1P8B3G1,A0A1P8B3G0,A0A1P8B3G2,A0A1P8B6I5,F4JKT0 F4JKS7_ARATH,A0A1P8B3G1_ARATH,A0A1P8B3G0_ARATH,A0A1P8B3G2_ARATH,A0A1P8B6I5_ARATH,F4JKT0_ARATH TRAF-like family protein 34200,37207,29381,32388,48335,49656 TRAF-like family protein locus:2118465;,locus:2118480; AT4G09770,AT4G09780 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411DX89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3651) Expressed protein (Os03g0186500 protein),Os03g0186500 protein (Fragment) Q10QR8,A0A0P0VTX5,A0A0P0VTX9 Q10QR8_ORYSJ,A0A0P0VTX5_ORYSJ,A0A0P0VTX9_ORYSJ Os03g0186500 LOC_Os03g08740 Os03g0186500 OSNPB_030186500,Os03g0186500 OSNPB_030186500 ENOG411DX80 UBP17,UBP16 Q9FKP5,Q9SB51,A0A1R7T3I4 UBP17_ARATH,UBP16_ARATH,A0A1R7T3I4_ARATH Ubiquitin carboxyl-terminal hydrolase 17 (EC 3.4.19.12) (Deubiquitinating enzyme 17) (AtUBP17) (Ubiquitin thioesterase 17) (Ubiquitin-specific-processing protease 17),Ubiquitin carboxyl-terminal hydrolase 16 (EC 3.4.19.12) (Deubiquitinating enzyme 16) (AtUBP16) (Ubiquitin thioesterase 16) (Ubiquitin-specific-processing protease 16),Ubiquitin-specific protease 17 DISRUPTION PHENOTYPE: Exhibits reduced salt tolerance. Reduced shoot growth in response to salt stress. {ECO:0000269|PubMed:23232097}. FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}.,FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in salt tolerance by modulating sodium transport activity and repressing cell death at least partially through modulating SHM1 stability and activity (PubMed:23232097). Involved in cadmium tolerance by interacting with HIPP27 and probably modulating its stability (PubMed:23857362). {ECO:0000269|PubMed:23232097, ECO:0000269|PubMed:23857362}. ARA:AT5G65450-MONOMER;,ARA:AT4G24560-MONOMER; 3.4.19.12 81999,110600,84049 Ubiquitin carboxyl-terminal hydrolase 17 (EC 3.4.19.12) (Deubiquitinating enzyme 17) (AtUBP17) (Ubiquitin thioesterase 17) (Ubiquitin-specific-processing protease 17),Ubiquitin carboxyl-terminal hydrolase 16 (EC 3.4.19.12) (Deubiquitinating enzyme 16) (AtUBP16) (Ubiquitin thioesterase 16) (Ubiquitin-specific-processing protease 16),Ubiquitin-specific protease 17 metal ion binding [GO:0046872]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; cell proliferation [GO:0008283]; flower development [GO:0009908]; leaf development [GO:0048366]; protein deubiquitination [GO:0016579]; regulation of response to salt stress [GO:1901000]; response to salt stress [GO:0009651]; root development [GO:0048364]; shoot system development [GO:0048367]; ubiquitin-dependent protein catabolic process [GO:0006511],integral component of membrane [GO:0016021]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in flowers, siliques, rosette leaves, cauline leaves, stems and at a lower level in roots. In roots, expressed in the sieve elements. {ECO:0000269|PubMed:23232097, ECO:0000269|PubMed:25081480}. locus:2168282;,locus:2121959; AT5G65450,AT4G24560 ubiquitin carboxyl-terminal hydrolase Os08g0478500 protein (Putative ubiquitin-specific protease),Os09g0464400 protein Q6ZJC2,A0A0P0XPE6 Q6ZJC2_ORYSJ,A0A0P0XPE6_ORYSJ Os08g0478500 Os08g0478500 OJ1666_A04.24 OSNPB_080478500,Os09g0464400 OSNPB_090464400 ENOG411DX81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF862 Os06g0182100 protein A0A0P0WTV3 A0A0P0WTV3_ORYSJ Os06g0182100 OSNPB_060182100 ENOG411DX82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411DX83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidase Amidase family protein, expressed (Os11g0170000 protein),Os12g0169000 protein Q2RA14,A0A0P0Y7J9 Q2RA14_ORYSJ,A0A0P0Y7J9_ORYSJ Os11g0170000 LOC_Os11g06900 OsJ_33114 OSNPB_110170000,Os12g0169000 OSNPB_120169000 ENOG411DX84 O65233 O65233_ARATH DBH-like monooxygenase (T26D22.2 protein) (Uncharacterized protein At5g35320) 25993 DBH-like monooxygenase (T26D22.2 protein) (Uncharacterized protein At5g35320) monooxygenase activity [GO:0004497] locus:2182638; AT5G35320 Inherit from NOG: expressed protein Os02g0141500 protein,Os02g0778100 protein Q6YX77,A0A0N7KG69 Q6YX77_ORYSJ,A0A0N7KG69_ORYSJ Os02g0141500 OJ1123_E07.4 OSNPB_020141500,Os02g0778100 OSNPB_020778100 ENOG411DX85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 LOB domain protein 40, putative, expressed (Os03g0609500 protein) Q75HN5 Q75HN5_ORYSJ Os03g0609500 LOC_Os03g41330 Os03g0609500 OSNPB_030609500 ENOG411DX86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA khg kdpg Os07g0222900 protein A0A0P0X3V0 A0A0P0X3V0_ORYSJ Os07g0222900 OSNPB_070222900 ENOG411DX87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box protein interaction domain containing protein (Os10g0507300 protein) Q8LN90 Q8LN90_ORYSJ OSJNBb0015K05.17 Os10g0507300 LOC_Os10g36310 OSNPB_100507300 ENOG411DX8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein binding zinc ion binding OSJNBb0118P14.4 protein (Os04g0403200 protein) (cDNA clone:J013170O17, full insert sequence),Os08g0115700 protein,OSJNBb0012E08.13 protein (OSJNBb0118P14.2 protein) (Os04g0402500 protein),Os03g0312500 protein (Fragment),Os02g0246101 protein (Fragment) Q7XSC9,B9FYR8,Q7FAF5,A0A0P0VWQ7,A0A0P0VH23 Q7XSC9_ORYSJ,B9FYR8_ORYSJ,Q7FAF5_ORYSJ,A0A0P0VWQ7_ORYSJ,A0A0P0VH23_ORYSJ Os04g0403200 Os04g0403200 OSJNBb0118P14.4 OSNPB_040403200,Os08g0115700 OsJ_25820 OSNPB_080115700,Os04g0402500 Os04g0402500 OSJNBb0012E08.13 OSJNBb0118P14.2 OSNPB_040402500,Os03g0312500 OSNPB_030312500,Os02g0246101 OSNPB_020246101 ENOG411DX8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RelA_SpoT Os02g0699400 protein A0A0P0VND6 A0A0P0VND6_ORYSJ Os02g0699400 OSNPB_020699400 ENOG411DX8J FPP4 Q0WSY2 FPP4_ARATH Filament-like plant protein 4 (AtFPP4) 109812 Filament-like plant protein 4 (AtFPP4) plasma membrane [GO:0005886]; microtubule binding [GO:0008017]; microtubule polymerization [GO:0046785]; trichome morphogenesis [GO:0010090] locus:2824556; AT1G19835 filament-like plant protein NA NA NA NA NA NA NA ENOG411DX8K KCR2 Q9FYL6 KCR2_ARATH Very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 (EC 1.-.-.-) (Beta-ketoacyl reductase 2) (AtKCR2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19439572}. FUNCTION: Probable reductase, but unlike KCR1, has no beta-ketoacyl-coenzyme A reductase activity. {ECO:0000269|PubMed:19439572}. ARA:AT1G24470-MONOMER; R-ATH-193048;R-ATH-75876; 1.-.-.- 35012 Very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 (EC 1.-.-.-) (Beta-ketoacyl reductase 2) (AtKCR2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ketoreductase activity [GO:0045703] DEVELOPMENTAL STAGE: Expressed in embryos of different stages and young developing seedlings, but absent from mature seeds. {ECO:0000269|PubMed:19439572}. TISSUE SPECIFICITY: Expressed in green siliques, flowers, inflorescence stems and leaves. Not detected in roots. {ECO:0000269|PubMed:19439572}. locus:2023996; AT1G24470 short chain dehydrogenase NA NA NA NA NA NA NA ENOG411DX8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Proteasome-associated protein ECM29 homolog NA NA NA NA NA NA NA ENOG411DX8N GFA2 Q8GWW8 GFA2_ARATH Chaperone protein dnaJ GFA2, mitochondrial (Chaperone protein dnaJ A30) (AtDjA30) (Gametophytic factor 2) DISRUPTION PHENOTYPE: Defect in fusion of polar nuclei and in synergid cell death. Complete female gametophyte defective; Male gametophyte defective-G. Drews-2002 FUNCTION: Chaperone that may play a role in mitochondrial protein folding. Involved in female gametophyte development. Required for cell death of the synergid cells during fertilization process, and fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:12215516}. 49438 Chaperone protein dnaJ GFA2, mitochondrial (Chaperone protein dnaJ A30) (AtDjA30) (Gametophytic factor 2) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; chaperone mediated protein folding requiring cofactor [GO:0051085]; embryo sac cellularization [GO:0009558]; embryo sac development [GO:0009553]; nuclear membrane fusion [GO:0000740]; polar nucleus fusion [GO:0010197]; response to heat [GO:0009408]; synergid death [GO:0010198] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:12215516}. locus:2162692; AT5G48030 chaperone protein DnaJ DnaJ C terminal region family protein, expressed (Os12g0168400 protein) (cDNA clone:J013038P03, full insert sequence),Os06g0116800 protein (Putative GFA2) (cDNA clone:001-020-E06, full insert sequence) Q2QX63,Q5VRK6 Q2QX63_ORYSJ,Q5VRK6_ORYSJ Os12g0168400 LOC_Os12g07060 Os12g0168400 OsJ_35356 OSNPB_120168400,Os06g0116800 OsJ_25536 OSJNBa0019F11.32 OSNPB_060116800 ENOG411DX8A MED33B,MED33A F4IN69,Q9LUG9 MD33B_ARATH,MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33B (Protein REDUCED EPIDERMAL FLUORESCENCE 4) (AtREF4),Mediator of RNA polymerase II transcription subunit 33A (REF4-related 1 protein) (REF4-resembling 1 protein) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18430946}.,DISRUPTION PHENOTYPE: No visible phenotype, but higher levels of sinapate esters in leaves. {ECO:0000269|PubMed:22167189}. FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator. {ECO:0000269|PubMed:18430946, ECO:0000269|PubMed:22167189}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator. {ECO:0000269|PubMed:22167189}. 139564,143094 Mediator of RNA polymerase II transcription subunit 33B (Protein REDUCED EPIDERMAL FLUORESCENCE 4) (AtREF4),Mediator of RNA polymerase II transcription subunit 33A (REF4-related 1 protein) (REF4-resembling 1 protein) mediator complex [GO:0016592]; membrane [GO:0016020]; phenylpropanoid metabolic process [GO:0009698]; regulation of phenylpropanoid metabolic process [GO:2000762]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],mediator complex [GO:0016592]; phenylpropanoid metabolic process [GO:0009698]; regulation of phenylpropanoid metabolic process [GO:2000762]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18430946}. locus:2039356;,locus:2088050; AT2G48110,AT3G23590 Component of the Mediator complex a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex having a compact conformation in its free form is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator Os07g0681500 protein,Os07g0211200 protein (Fragment),Os07g0211101 protein Q7XHW3,Q7XHW2,A0A0P0X3W4,A0A0P0X3R2 Q7XHW3_ORYSJ,Q7XHW2_ORYSJ,A0A0P0X3W4_ORYSJ,A0A0P0X3R2_ORYSJ Os07g0681500 Os07g0681500 OSJNBa0008J01.25-1 OSNPB_070681500,OSJNBa0008J01.25-2 Os07g0681500 OSNPB_070681500,Os07g0211200 OSNPB_070211200,Os07g0211101 OSNPB_070211101 ENOG411DX8B OAS HIGH ACCUMULATION 1 Q9M017 Q9M017_ARATH Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (Uncharacterized protein F7A7_100) R-ATH-2132295; 26218 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (Uncharacterized protein F7A7_100) locus:2149730; AT5G01580 Gamma-interferon-inducible lysosomal thiol Os01g0828200 protein A0A0N7KE00 A0A0N7KE00_ORYSJ Os01g0828200 OSNPB_010828200 ENOG411DX8C Q9M223 UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA. {ECO:0000250}. R-ATH-6791226; 27149 Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; megagametogenesis [GO:0009561]; ribosomal small subunit biogenesis [GO:0042274]; rRNA processing [GO:0006364] locus:2103356; AT3G60360 U3 small nucleolar RNA-associated protein Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) Q8S1Z1 UTP11_ORYSJ Os01g0810000 LOC_Os01g59500 OsJ_03819 P0468B07.32-1 P0468B07.32-2 FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA. {ECO:0000250}. ENOG411DX8D T27I15_140 Q9LEX1,F4JD27,F4JD16 Q9LEX1_ARATH,F4JD27_ARATH,F4JD16_ARATH At3g61050 (CaLB protein) (Calcium-dependent lipid-binding (CaLB domain) family protein),Calcium-dependent lipid-binding (CaLB domain) family protein,C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase 55095,57615,71121 At3g61050 (CaLB protein) (Calcium-dependent lipid-binding (CaLB domain) family protein),Calcium-dependent lipid-binding (CaLB domain) family protein,C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase endoplasmic reticulum [GO:0005783]; nuclear membrane [GO:0031965]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; negative regulation of transcription, DNA-templated [GO:0045892]; positive gravitropism [GO:0009958]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],endoplasmic reticulum [GO:0005783],endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527] locus:2100992;,locus:2100972;,locus:2100967; AT3G61050,AT3G61030,AT3G60950 integral membrane single C2 domain protein Os07g0409100 protein (Putative CLB1 protein (Calcium-dependent lipid binding) protein),Os03g0251600 protein (Fragment) Q7XAL6,A0A0P0VVI8 Q7XAL6_ORYSJ,A0A0P0VVI8_ORYSJ P0492E07.115 Os07g0409100 OsJ_23930 OSNPB_070409100,Os03g0251600 OSNPB_030251600 ENOG411DX8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potassium channel Potassium channel KOR2 (K(+) outward-rectifying channel 2),Os04g0445000 protein (Fragment) Q7XUW4,A0A0P0WAU4 KOR2_ORYSJ,A0A0P0WAU4_ORYSJ Os04g0445000 LOC_Os04g36740 OSJNBa0027P08.8,Os04g0445000 OSNPB_040445000 FUNCTION: Probable outward-rectifying potassium channel. {ECO:0000250}. ENOG411DX8F NBS1 Q0H8D7 NBS1_ARATH Nijmegen breakage syndrome 1 protein (AtNbs1) DISRUPTION PHENOTYPE: Hypersensitivity to the DNA cross-linking reagent mitomycin C. {ECO:0000269|PubMed:17672843}. Significantly smaller when grown in the presence of methyl methanosulfonate (MMS) with root growth. Normal growth under standard growth conditions.,Severely disrupted meiosis. Sensitive to MMS (inducer of genotoxic stress) and mitomycin C (DNA cross-linking agent)-C. West-2007 FUNCTION: Component of the MRE11-RAD50-NBN complex (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex may be involved in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, and cell cycle checkpoint control. Functions also in the very early stages of meiosis. {ECO:0000269|PubMed:17672843}. R-ATH-2559586;R-ATH-5685939;R-ATH-5693548;R-ATH-5693565;R-ATH-5693607;R-ATH-5693616; 60078 Nijmegen breakage syndrome 1 protein (AtNbs1) Mre11 complex [GO:0030870]; nuclear chromosome, telomeric region [GO:0000784]; PML body [GO:0016605]; damaged DNA binding [GO:0003684]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to ionizing radiation [GO:0071479]; DNA duplex unwinding [GO:0032508]; double-strand break repair via homologous recombination [GO:0000724]; mitotic G2 DNA damage checkpoint [GO:0007095]; mitotic recombination [GO:0006312]; reciprocal meiotic recombination [GO:0007131]; signal transduction in response to DNA damage [GO:0042770]; telomere capping [GO:0016233] locus:2076934; AT3G02680 FHA domain Nijmegen breakage syndrome 1 protein (OsNbs1) Q7XD82 NBS1_ORYSJ NBS1 LOC_Os10g34580 Os10g0487300 OsJ_31956 OSJNBa0029C15.11 FUNCTION: Component of the MRE11-RAD50-NBN complex (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex may be involved in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, and cell cycle checkpoint control. Functions also in the very early stages of meiosis. {ECO:0000250|UniProtKB:Q0H8D7}. ENOG411DX8G PATL4 Q94C59 PATL4_ARATH Patellin-4 FUNCTION: Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites (By similarity). {ECO:0000250}. MISCELLANEOUS: 'Patella' means 'small plate' in Latin. 61189 Patellin-4 cytosol [GO:0005829]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; transporter activity [GO:0005215]; cell cycle [GO:0007049]; cell division [GO:0051301] locus:2204594; AT1G30690 CRAL/TRIO domain Os06g0671800 protein A0A0P0WZV9 A0A0P0WZV9_ORYSJ Os06g0671800 OSNPB_060671800 ENOG411DX8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CMV 1a interacting protein 1 CMV 1a interacting protein 1, putative, expressed (Os10g0181600 protein) (cDNA clone:001-046-F08, full insert sequence),Os10g0181600 protein Q33AG7,A0A0P0XSK9 Q33AG7_ORYSJ,A0A0P0XSK9_ORYSJ Os10g0181600 LOC_Os10g10180 OsJ_30889 OSNPB_100181600,Os10g0181600 OSNPB_100181600 ENOG411DX8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase OSJNBa0043L09.9 protein (Os04g0633900 protein) Q7XQT8 Q7XQT8_ORYSJ OSJNBa0043L09.9 Os04g0633900 OSNPB_040633900 ENOG411DX8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0656100 protein (cDNA clone:001-011-B12, full insert sequence) Q0DZ02 Q0DZ02_ORYSJ Os02g0656100 Os02g0656100 OsJ_07788 OSNPB_020656100 ENOG411DX8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain BURP domain-containing protein 9 (OsBURP09),BURP domain-containing protein 11 (OsBURP11),Os06g0302650 protein,Os06g0302000 protein (Fragment),Os06g0240050 protein (Fragment) Q67VD7,Q5Z5C9,A3BB04,A0A0P0WVL5,A0A0P0WV30 BURP9_ORYSJ,BURPB_ORYSJ,A3BB04_ORYSJ,A0A0P0WVL5_ORYSJ,A0A0P0WV30_ORYSJ BURP9 Os06g0240050 Os06g0240300 LOC_Os06g13240 OSJNBa0052G07.35,BURP11 Os06g0302000 LOC_Os06g19800 OJ1217_C01.19 OSJNBa0042E12.9,Os06g0302650 OsJ_21079 OSNPB_060302650,Os06g0302000 OSNPB_060302000,Os06g0240050 OSNPB_060240050 ENOG411DX8Q F4JZM3,F4JZM4 F4JZM3_ARATH,F4JZM4_ARATH GPI transamidase component family protein / Gaa1-like family protein 76810,77096 GPI transamidase component family protein / Gaa1-like family protein GPI-anchor transamidase complex [GO:0042765],endoplasmic reticulum [GO:0005783]; GPI-anchor transamidase complex [GO:0042765]; attachment of GPI anchor to protein [GO:0016255] locus:2182197; AT5G19130 glycosylphosphatidylinositol anchor attachment 1 Os01g0682200 protein A0A0P0V6Q8 A0A0P0V6Q8_ORYSJ Os01g0682200 OSNPB_010682200 ENOG411DX8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Dynamin family NA NA NA NA NA NA NA ENOG411DX8S IAA7,IAA14 Q38825,Q38832,C0Z2L3,A0A1P8B7U4,A0A1P8B7U9,A0A1I9LPC8,F4J2U7 IAA7_ARATH,IAA14_ARATH,C0Z2L3_ARATH,A0A1P8B7U4_ARATH,A0A1P8B7U9_ARATH,A0A1I9LPC8_ARATH,F4J2U7_ARATH Auxin-responsive protein IAA7 (Auxin resistant 2) (Indoleacetic acid-induced protein 7),Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (Protein SOLITARY ROOT),Auxin-responsive protein Although in the absence of treatment cotyledon growth is similar between wildtype (WT) and mutant in the presence of brassinolide WT cotyledons increased by 83% while those of mutant only increased by 49%.,Less sensitive to brassinolide than wildtype in terms of dark-grown hypocotyl elongation.,Stronger inhibition of root elongation by brassinolide compared to wildtype.,Absence of lateral roots. Defective response to auxin stimulus in the root. Slightly longer hypocotyl-J. Reed-2000 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 26381,25044,20404,25667,21376,17701,22609 Auxin-responsive protein IAA7 (Auxin resistant 2) (Indoleacetic acid-induced protein 7),Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (Protein SOLITARY ROOT),Auxin-responsive protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; gravitropism [GO:0009630]; response to auxin [GO:0009733]; response to jasmonic acid [GO:0009753]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; lateral root morphogenesis [GO:0010102]; negative regulation of transcription, DNA-templated [GO:0045892]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in stems and flowers. {ECO:0000269|PubMed:7658471}.,TISSUE SPECIFICITY: Preferentially expressed in roots and flowers. {ECO:0000269|PubMed:7658471}. locus:2094598;,locus:2129900; AT3G23050,AT4G14550 Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs) proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression NA NA NA NA NA NA NA ENOG411DX8T Q9LPF5,A0A1P8APG6 Q9LPF5_ARATH,A0A1P8APG6_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (T12C22.3 protein) (Uncharacterized protein At1g44760),Adenine nucleotide alpha hydrolases-like superfamily protein 23083,31321 Adenine nucleotide alpha hydrolases-like superfamily protein (T12C22.3 protein) (Uncharacterized protein At1g44760),Adenine nucleotide alpha hydrolases-like superfamily protein hydrolase activity [GO:0016787]; response to stress [GO:0006950],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2194824; AT1G44760 Universal stress protein Os05g0428400 protein,Os01g0875300 protein (Fragment) Q75HQ2,A0A0P0VB72 Q75HQ2_ORYSJ,A0A0P0VB72_ORYSJ Os05g0428400 OSNPB_050428400 P0636F09.16,Os01g0875300 OSNPB_010875300 ENOG411DX8U ICP55 F4HZG9 ICP55_ARATH Intermediate cleaving peptidase 55, mitochondrial (EC 3.4.11.-) (AtICP55) (Protein INTERMEDIATE CLEAVAGE PEPTIDASE 55) DISRUPTION PHENOTYPE: Altered mitochondrial protein stability. {ECO:0000269|PubMed:25862457}. FUNCTION: Aminopeptidase which cleaves preprotein intermediates that carry destabilizing N-ter amino acid residues after the mitochondrial processing peptidase (MPP) cleavage site and is thus critical for stabilization of the mitochondrial proteome. {ECO:0000269|PubMed:25732537, ECO:0000269|PubMed:25862457}. 3.4.11.- 54982 Intermediate cleaving peptidase 55, mitochondrial (EC 3.4.11.-) (AtICP55) (Protein INTERMEDIATE CLEAVAGE PEPTIDASE 55) mitochondrion [GO:0005739]; nucleus [GO:0005634]; aminopeptidase activity [GO:0004177]; manganese ion binding [GO:0030145]; metallopeptidase activity [GO:0008237]; peptidase activity [GO:0008233]; protein stabilization [GO:0050821] locus:2203038; AT1G09300 xaa-Pro aminopeptidase Metallopeptidase family M24 containing protein, expressed (Os12g0563500 protein) (cDNA clone:J033088F06, full insert sequence) Q2QNJ1 Q2QNJ1_ORYSJ Os12g0563500 LOC_Os12g37640 Os12g0563500 OsJ_13234 OSNPB_120563500 ENOG411DX8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TBC Os01g0100100 protein A0A0P0UX28 A0A0P0UX28_ORYSJ Os01g0100100 OSNPB_010100100 ENOG411DX8W SKIP O80653 SKIP_ARATH SNW/SKI-interacting protein (AtSKIP) (Protein EARLY FLOWERING AND INSENSITIVE TO PHOTOPERIOD 1) (SNW domain-containing protein) DISRUPTION PHENOTYPE: Longer circadian period. Severely dwarfed and infertile when homozygous. {ECO:0000269|PubMed:22942380}. Dwarf; Reduced fertility-C. Soo Kim-2009 FUNCTION: Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. Associates with the pre-mRNA of PRR7, PRR9, ELF3 and GI, and is necessary for the regulation of their alternative splicing and mRNA maturation. Probably involved in splice site recognition. {ECO:0000269|PubMed:19765229, ECO:0000269|PubMed:22942380}. R-ATH-72163; Spliceosome (03040),Epstein-Barr virus infection (05169),Viral carcinogenesis (05203),Notch signaling pathway (04330) 69423 SNW/SKI-interacting protein (AtSKIP) (Protein EARLY FLOWERING AND INSENSITIVE TO PHOTOPERIOD 1) (SNW domain-containing protein) catalytic step 2 spliceosome [GO:0071013]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleus [GO:0005634]; post-mRNA release spliceosomal complex [GO:0071014]; SMAD protein complex [GO:0071141]; transcription cofactor activity [GO:0003712]; generation of catalytic spliceosome for second transesterification step [GO:0000350]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of circadian rhythm [GO:0042752]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to mannitol [GO:0010555]; response to salt stress [GO:0009651]; rhythmic process [GO:0048511]; RNA splicing [GO:0008380]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Expressed in every developmental stage. Up-regulated by senescence. {ECO:0000269|PubMed:19765229}. TISSUE SPECIFICITY: Expressed in roots, stems, seedlings, siliques, cotyledons, leaves, inflorescences, seeds and shoot apical meristem. {ECO:0000269|PubMed:19765229, ECO:0000269|PubMed:22942380}. locus:2195970; AT1G77180 SNW domain-containing protein SNW/SKI-interacting protein B (OsSKIPb),SNW/SKI-interacting protein A (OsSKIPa),Os02g0759800 protein Q69QB5,Q6K8D9,A0A0P0VPQ9 SKIPB_ORYSJ,SKIPA_ORYSJ,A0A0P0VPQ9_ORYSJ SKIPB Os06g0218000 LOC_Os06g11420 P0644A02.12,SKIPA Os02g0759800 LOC_Os02g52250 OJ1175_B01.11 OsJ_08462,Os02g0759800 OSNPB_020759800 FUNCTION: Acts as positive regulator of drought and salt tolerance. Acts as positive regulator of cell viability. {ECO:0000269|PubMed:19339499}. MISCELLANEOUS: Plants silencing SKIPA exhibit growth arrest and reduced cell viability. Plants overexpressing SKIPA exhibit drought resistance and significantly improved growth performance in medium containing stress agents (abscisic acid, salt, or mannitol). {ECO:0000269|PubMed:19339499}. ENOG411E15I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PIPKc Phosphatidylinositol 4-phosphate 5-kinase (EC 2.7.1.68) Q10L79,Q7XAM7 Q10L79_ORYSJ,Q7XAM7_ORYSJ Os03g0356582 LOC_Os03g24160 Os03g0356582 OSNPB_030356582,OJ1477_F01.115 Os07g0658700 OSNPB_070658700 ENOG411E5NR F4JT39 F4JT39_ARATH Carbohydrate-binding X8 domain superfamily protein 24600 Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:2140882; AT4G13600 glucan endo-1-3-beta-glucosidase NA NA NA NA NA NA NA ENOG411EEBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EDMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metallo-beta-lactamase superfamily NA NA NA NA NA NA NA ENOG411EDMZ PBL22 Q9SFX0 PBL22_ARATH Probable serine/threonine-protein kinase PBL22 (EC 2.7.11.1) (PBS1-like protein 22) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 42318 Probable serine/threonine-protein kinase PBL22 (EC 2.7.11.1) (PBS1-like protein 22) chloroplast envelope [GO:0009941]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2014604; AT1G76370 STYKc NA NA NA NA NA NA NA ENOG411EDMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2424) NA NA NA NA NA NA NA ENOG411EDMQ Q5XV72,A0MFT2 Q5XV72_ARATH,A0MFT2_ARATH Caldesmon-like protein,Caldesmon-like protein (Expressed protein) 86618,86852 Caldesmon-like protein,Caldesmon-like protein (Expressed protein) locus:2117373; AT4G25070 NA NA NA NA NA NA NA NA ENOG411EDMR NEK7,Nek7 Q9LHI7,A0A1I9LS93,A0A1I9LS94,F4J8P0 NEK7_ARATH,A0A1I9LS93_ARATH,A0A1I9LS94_ARATH,F4J8P0_ARATH Serine/threonine-protein kinase Nek7 (EC 2.7.11.1) (NimA-related protein kinase 7) (AtNek7),NIMA-related kinase 7 FUNCTION: May be involved in plant development processes. 2.7.11.1 63700,55318,55937,64845 Serine/threonine-protein kinase Nek7 (EC 2.7.11.1) (NimA-related protein kinase 7) (AtNek7),NIMA-related kinase 7 ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2082259; AT3G12200 STYKc NA NA NA NA NA NA NA ENOG411EDMS CYP96A15 Q9FVS9,B3H7K7 C96AF_ARATH,B3H7K7_ARATH Alkane hydroxylase MAH1 (EC 1.14.-.-) (Cytochrome P450 96A15) (Protein MID-CHAIN ALKANE HYDROXYLASE 1),Cytochrome P450, family 96, subfamily A, polypeptide 15 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but stem wax of mutant plants are devoid of secondary alcohols and ketones and have increased alkane amounts. {ECO:0000269|PubMed:17905869, ECO:0000269|PubMed:19346242}. Low secondary alcohol and ketone levels in stem wax-R. Jetter-2007 FUNCTION: Involved in the formation of secondary alcohols and ketones in stem cuticular wax. Catalyzes the hydroxylation of a methylene unit in the middle of alkane molecules to form secondary alcohols and possibly also a second hydroxylation leading to the corresponding ketones. {ECO:0000269|PubMed:17905869}. ARA:AT1G57750-MONOMER;MetaCyc:AT1G57750-MONOMER; 1.14.-.- 57696,50607 Alkane hydroxylase MAH1 (EC 1.14.-.-) (Cytochrome P450 96A15) (Protein MID-CHAIN ALKANE HYDROXYLASE 1),Cytochrome P450, family 96, subfamily A, polypeptide 15 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; midchain alkane hydroxylase activity [GO:0080133]; wax biosynthetic process [GO:0010025],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Expressed in the expanding regions of the inflorescence stems, specifically to the epidermal pavement cells, petioles and siliques. {ECO:0000269|PubMed:17905869}. locus:2206470; AT1G57750 midchain alkane hydroxylase NA NA NA NA NA NA NA ENOG411EDMT P0DKG4,F4IN32,A0A1P8B135 MCC07_ARATH,MCC06_ARATH,A0A1P8B135_ARATH MATH domain and coiled-coil domain-containing protein At2g42465 (RTM3-like protein At2g42465),MATH domain and coiled-coil domain-containing protein At2g42460 (RTM3-like protein At2g42460),MATH domain/coiled-coil protein 47196,34204,11795 MATH domain and coiled-coil domain-containing protein At2g42465 (RTM3-like protein At2g42465),MATH domain and coiled-coil domain-containing protein At2g42460 (RTM3-like protein At2g42460),MATH domain/coiled-coil protein AT2G42465,AT2G42460 MATH NA NA NA NA NA NA NA ENOG411EDMU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ homolog subfamily B member NA NA NA NA NA NA NA ENOG411EDMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0126 domain NA NA NA NA NA NA NA ENOG411EDMW PSI3 Q9C5B1,A0A1P8BEB8 Q9C5B1_ARATH,A0A1P8BEB8_ARATH D-lactate dehydrogenase (DUF668) (Uncharacterized protein At5g08660),D-lactate dehydrogenase (DUF668) 72498,52415 D-lactate dehydrogenase (DUF668) (Uncharacterized protein At5g08660),D-lactate dehydrogenase (DUF668) mitochondrion [GO:0005739]; plasma membrane [GO:0005886] locus:504956337; AT5G08660 Domain of unknown function (DUF3475) NA NA NA NA NA NA NA ENOG411EDMH MAIN Q9LMT7 MAIN_ARATH Protein MAINTENANCE OF MERISTEMS DISRUPTION PHENOTYPE: Developmental defects, such as short roots, misshaped leaves, reduced fertility and partial fasciation of stems. {ECO:0000269|PubMed:23607329}. FUNCTION: Required for the organization of the root apical meristem (RAM) and the shoot apical meristem (SAM). Required to maintain genome stability and cell division activity in meristematic cells. {ECO:0000269|PubMed:23607329}. 54697 Protein MAINTENANCE OF MERISTEMS nucleus [GO:0005634]; transaminase activity [GO:0008483]; meristem development [GO:0048507]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in root meristem, root vasculature, shoot apical meristem (SAM), leaf vasculature and ovules. {ECO:0000269|PubMed:23607329}. locus:2030878; AT1G17930 Plant mobile domain NA NA NA NA NA NA NA ENOG411EDMI MFH8.2 Q9FGM6 Q9FGM6_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Protochlorophyllide reductase; oxidoreductase required for shoot apex development) ARA:AT5G53100-MONOMER; 40632 NAD(P)-binding Rossmann-fold superfamily protein (Protochlorophyllide reductase; oxidoreductase required for shoot apex development) oxidoreductase activity [GO:0016491] locus:2163751; AT5G53100 KR domain NA NA NA NA NA NA NA ENOG411EDMJ Q9LPM2 FB51_ARATH F-box protein At1g49990 50052 F-box protein At1g49990 locus:2031080; AT1G49990 FBOX NA NA NA NA NA NA NA ENOG411EDMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EDMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Na+/H+ antiporter 1 NA NA NA NA NA NA NA ENOG411EDMN IPS3,IPS1,IPS2,MIPS2 Q9LX12,P42801,Q38862,A0A1P8B151,F4IIN3 INO3_ARATH,INO1_ARATH,INO2_ARATH,A0A1P8B151_ARATH,F4IIN3_ARATH Probable inositol 3-phosphate synthase isozyme 3 (AtIPS3) (MIP synthase 3) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase 3) (AtMIPS 3) (MI-1-P synthase 3),Inositol-3-phosphate synthase isozyme 1 (AtIPS1) (MIP synthase 1) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase 1) (AtMIPS 1) (MI-1-P synthase 1),Inositol-3-phosphate synthase isozyme 2 (AtIPS2) (MIP synthase 2) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase 2) (AtMIPS 2) (MI-1-P synthase 2),Myo-inositol-1-phosphate synthase 2 DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:19812700}.,DISRUPTION PHENOTYPE: Shorter seedlings with deformed cotyledons and altered root cap organization. Spontaneous lesion formation on mature leaves when plants are transferred under long days. Enhanced basal resistance to pathogens and increased sensitivity to abscisic acid during seed germination and root growth. {ECO:0000269|PubMed:19812700, ECO:0000269|PubMed:20215587}.,DISRUPTION PHENOTYPE: No spontaneous lesion formation and no significant alteration in the response to abscisic acid. Increased susceptibility to bacterial and fungal pathogens. {ECO:0000269|PubMed:18643983, ECO:0000269|PubMed:19812700, ECO:0000269|PubMed:20215587}. No homozygous mutant plants recovered-C. Bergounioux-2009,Short hypocotyl; Abnormal cotyledon shape; Necrotic lesions on leaves; Root cap disorganized; Abnormal veins in cotyledons-C. Bergounioux-2009 FUNCTION: Involved in myo-inositol synthesis. {ECO:0000269|PubMed:20215587}.,FUNCTION: Catalyzes the majority of myo-inositol synthesis required for plant growth and development. Acts as a repressor of programmed cell death and protects plant cells against cell death under high light intensity or long days. Controls its own transcription by inhibiting ATXR6 activity. Reduces the deposition of inhibitory histone marks on its own promoter. {ECO:0000269|PubMed:20215587, ECO:0000269|PubMed:23341037}. PATHWAY: Polyol metabolism; myo-inositol biosynthesis; myo-inositol from D-glucose 6-phosphate: step 1/2. ARA:AT5G10170-MONOMER;,ARA:AT4G39800-MONOMER;,ARA:AT2G22240-MONOMER; R-ATH-1855183; 5.5.1.4; 5.5.1.4 56418,56515,56337,51468,41786 Probable inositol 3-phosphate synthase isozyme 3 (AtIPS3) (MIP synthase 3) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase 3) (AtMIPS 3) (MI-1-P synthase 3),Inositol-3-phosphate synthase isozyme 1 (AtIPS1) (MIP synthase 1) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase 1) (AtMIPS 1) (MI-1-P synthase 1),Inositol-3-phosphate synthase isozyme 2 (AtIPS2) (MIP synthase 2) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase 2) (AtMIPS 2) (MI-1-P synthase 2),Myo-inositol-1-phosphate synthase 2 cytoplasm [GO:0005737]; inositol-3-phosphate synthase activity [GO:0004512]; embryo development ending in seed dormancy [GO:0009793]; inositol biosynthetic process [GO:0006021]; phospholipid biosynthetic process [GO:0008654],cytoplasm [GO:0005737]; nucleus [GO:0005634]; inositol-3-phosphate synthase activity [GO:0004512]; embryo development ending in seed dormancy [GO:0009793]; inositol biosynthetic process [GO:0006021]; myo-inositol hexakisphosphate biosynthetic process [GO:0010264]; phosphatidylserine biosynthetic process [GO:0006659]; post-embryonic development [GO:0009791],cytoplasm [GO:0005737]; inositol-3-phosphate synthase activity [GO:0004512]; cellular response to phosphate starvation [GO:0016036]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to virus [GO:0051607]; embryo development ending in seed dormancy [GO:0009793]; inositol biosynthetic process [GO:0006021]; myo-inositol hexakisphosphate biosynthetic process [GO:0010264]; phospholipid biosynthetic process [GO:0008654]; response to auxin [GO:0009733]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542],inositol-3-phosphate synthase activity [GO:0004512]; inositol biosynthetic process [GO:0006021]; phospholipid biosynthetic process [GO:0008654] TISSUE SPECIFICITY: Expressed in siliques, leaves, roots, seed endosperm, but not in embryos. Highest expression in roots. Confined to vascular tissue and hydathodes of leaves. {ECO:0000269|PubMed:18603618, ECO:0000269|PubMed:20215587}.,TISSUE SPECIFICITY: Expressed in siliques, leaves, roots, seed endosperm, but not in embryos. Highest expression in leaves, but restricted to vascular tissue in older leaves. {ECO:0000269|PubMed:18603618, ECO:0000269|PubMed:20215587}.,TISSUE SPECIFICITY: Expressed in siliques, leaves, roots, seed endosperm, but not in embryos. Highest expression in seeds. In leaves, only expressed in hydathodes and vascular tissue. {ECO:0000269|PubMed:18603618, ECO:0000269|PubMed:20215587}. locus:2184153;,locus:2135297;,locus:2060364; AT5G10170,AT4G39800,AT2G22240 Myo-inositol-1-phosphate synthase NA NA NA NA NA NA NA ENOG411EDMA TIR Q9SSN3,Q9SSN1,Q9SSN5,Q9SSN6,Q9SSN2,Q4PT31 TIR_ARATH,Q9SSN1_ARATH,Q9SSN5_ARATH,Q9SSN6_ARATH,Q9SSN2_ARATH,Q4PT31_ARATH Toll/interleukin-1 receptor-like protein (AtTIR),Disease resistance protein (TIR-NBS class) (Similar to part of disease resistance protein RPP1-WsA),Similar to part of disease resistance protein (Toll-Interleukin-Resistance (TIR) domain-containing protein),Similar to part of disease resistance protein (Toll-Interleukin-Resistance (TIR) domain-containing protein) (Virus resistance protein, putative),At1g72940/F3N23_14 (Similar to NL27) (Toll-Interleukin-Resistance (TIR) domain-containing protein),Disease resistance protein (TIR-NBS class) (Putative disease resistance protein) FUNCTION: Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth (By similarity). {ECO:0000250}. 20245,43570,42903,41209,42296,43241 Toll/interleukin-1 receptor-like protein (AtTIR),Disease resistance protein (TIR-NBS class) (Similar to part of disease resistance protein RPP1-WsA),Similar to part of disease resistance protein (Toll-Interleukin-Resistance (TIR) domain-containing protein),Similar to part of disease resistance protein (Toll-Interleukin-Resistance (TIR) domain-containing protein) (Virus resistance protein, putative),At1g72940/F3N23_14 (Similar to NL27) (Toll-Interleukin-Resistance (TIR) domain-containing protein),Disease resistance protein (TIR-NBS class) (Putative disease resistance protein) cytoplasm [GO:0005737]; plasmodesma [GO:0009506]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Mostly present in shoots. {ECO:0000269|PubMed:12366802}. locus:2032733;,locus:2032597;,locus:2032718;,locus:2032713;,locus:2032753;,locus:2823998; AT1G72930,AT1G72950,AT1G72910,AT1G72900,AT1G72940,AT1G17615 TIR NA NA NA NA NA NA NA ENOG411EDMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alba NA NA NA NA NA NA NA ENOG411EDMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cell differentiation family Rcd1-like NA NA NA NA NA NA NA ENOG411EDME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Diacylglycerol acyltransferase NA NA NA NA NA NA NA ENOG411EDMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: DnaJ NA NA NA NA NA NA NA ENOG411EDM8 ERF039 Q9SUK8 ERF39_ARATH Ethylene-responsive transcription factor ERF039 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 19909 Ethylene-responsive transcription factor ERF039 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2129111; AT4G16750 transcription factor NA NA NA NA NA NA NA ENOG411EDM0 Q9FHW9,Q9LH73 GDL90_ARATH,GDL52_ARATH GDSL esterase/lipase At5g42170 (EC 3.1.1.-) (Extracellular lipase At5g42170),GDSL esterase/lipase At3g14820 (EC 3.1.1.-) (Extracellular lipase At3g14820) ARA:AT5G42170-MONOMER;,ARA:AT3G14820-MONOMER; 3.1.1.- 40530,39194 GDSL esterase/lipase At5g42170 (EC 3.1.1.-) (Extracellular lipase At5g42170),GDSL esterase/lipase At3g14820 (EC 3.1.1.-) (Extracellular lipase At3g14820) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] locus:2165810;,locus:2099387; AT5G42170,AT3G14820 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EDM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDM2 Q84JK0,A0A1P8B130 Q84JK0_ARATH,A0A1P8B130_ARATH ATP-dependent helicase family protein (Putative hydroxyproline-rich glycoprotein),ATP-dependent helicase family protein 70681,66155 ATP-dependent helicase family protein (Putative hydroxyproline-rich glycoprotein),ATP-dependent helicase family protein helicase activity [GO:0004386] locus:2062830; AT2G28240 NA NA NA NA NA NA NA NA ENOG411EDM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-terminal domain of 1-Cys peroxiredoxin NA NA NA NA NA NA NA ENOG411EDM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif NA NA NA NA NA NA NA ENOG411EDM5 MFC19.10 Q8H0X4,F4KD80 Q8H0X4_ARATH,F4KD80_ARATH Protein kinase superfamily protein (Serine/threonine-protein kinase Mak (Male germ cell-associated kinase)-like protein),Protein kinase superfamily protein 56654,56496 Protein kinase superfamily protein (Serine/threonine-protein kinase Mak (Male germ cell-associated kinase)-like protein),Protein kinase superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; regulation of gene expression [GO:0010468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2163583; AT5G45430 S_TKc NA NA NA NA NA NA NA ENOG411EDM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class II (A) NA NA NA NA NA NA NA ENOG411E8M2 BHLH115,bHLH115 Q9C682,F4I7Z3 BH115_ARATH,F4I7Z3_ARATH Transcription factor bHLH115 (Basic helix-loop-helix protein 115) (AtbHLH115) (bHLH 115) (Transcription factor EN 134) (bHLH transcription factor bHLH115),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 25512,33136 Transcription factor bHLH115 (Basic helix-loop-helix protein 115) (AtbHLH115) (bHLH 115) (Transcription factor EN 134) (bHLH transcription factor bHLH115),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2026027; AT1G51070 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E8MA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE70 ML2 Q9SJG8,F4IP94 AML2_ARATH,F4IP94_ARATH Protein MEI2-like 2 (AML2) (MEI2-like protein 2),MEI2-like 2 DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:15720729}. No visible phenotype. FUNCTION: Probable RNA-binding protein that plays a role in meiosis and vegetative growth. {ECO:0000269|PubMed:15720729, ECO:0000269|PubMed:16473967}. 93215,91900 Protein MEI2-like 2 (AML2) (MEI2-like protein 2),MEI2-like 2 RNA binding [GO:0003723]; meiotic cell cycle [GO:0051321]; positive regulation of growth [GO:0045927]; positive regulation of meiotic nuclear division [GO:0045836],RNA binding [GO:0003723] DEVELOPMENTAL STAGE: Expressed in the embryo at the heart and torpedo stages. Highly expressed throughout the vegetative shoot apex. {ECO:0000269|PubMed:15356386}. locus:2045605; AT2G42890 RNA recognition motif 2 NA NA NA NA NA NA NA ENOG411EE7D CAR8 O49303 CAR8_ARATH Protein C2-DOMAIN ABA-RELATED 8 FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). {ECO:0000250|UniProtKB:Q9FHP6, ECO:0000250|UniProtKB:Q9LVH4}. 18569 Protein C2-DOMAIN ABA-RELATED 8 apoplast [GO:0048046]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547] locus:2201190; AT1G23140 C2 domain NA NA NA NA NA NA NA ENOG411DT35 PCMP-E42 P0C8Q8 PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020, mitochondrial 76247 Pentatricopeptide repeat-containing protein At5g19020, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2179619; AT5G19020 Pentatricopeptide repeat-containing protein Os01g0390600 protein (Pentatricopeptide (PPR) repeat-containing-like protein) Q8LH44 Q8LH44_ORYSJ Os01g0390600 OJ1123_G09.31 OSNPB_010390600 ENOG411DT34 ATAB2 Q9SFB3 ATAB2_ARATH Protein TAB2 homolog, chloroplastic (Protein ATAB2) DISRUPTION PHENOTYPE: Albino phenotype and seedling growth arrest at 2 to 4 leaves. {ECO:0000269|PubMed:17139246}. Seedling lethal (inferred from pigment defect); Albino-J. Rochaix-2006 FUNCTION: Nuclear genome-encoded A/U-rich RNA-binding protein involved in the biogenesis of photosystem I (PSI) and II (PSII). Required for the light-controlled accumulation of PSI and PSII during early plant development (PubMed:17139246). Does not seem to be required for the translation of mRNAs of the PSI subunits (PubMed:25725436). {ECO:0000269|PubMed:17139246, ECO:0000269|PubMed:25725436}. 41917 Protein TAB2 homolog, chloroplastic (Protein ATAB2) chloroplast [GO:0009507]; RNA binding [GO:0003723]; chloroplast organization [GO:0009658]; de-etiolation [GO:0009704]; photosystem I assembly [GO:0048564]; translation [GO:0006412] locus:2077432; AT3G08010 Protein of unknown function (DUF1092) Protein TAB2 homolog, chloroplastic Q6K9C1 ATAB2_ORYSJ Os02g0610800 OJ1476_F05.22 FUNCTION: Nuclear genome-encoded factor involved in the biogenesis of photosystem I (PSI). Required for the accumulation of PSI during plant development. Does not seem to be required for the translation of mRNAs of the PSI subunits. {ECO:0000250|UniProtKB:B4FTR7}. ENOG411DT37 Q8LPN7,A0A1I9LQQ9,F4I506 RNG1L_ARATH,A0A1I9LQQ9_ARATH,F4I506_ARATH E3 ubiquitin-protein ligase RING1-like (EC 2.3.2.27) (RING finger protein 1) (RING-type E3 ubiquitin transferase RING1-like),RING/U-box superfamily protein,E3 ubiquitin-protein ligase RING1-like protein FUNCTION: E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-983168; 2.3.2.27 35705,42101,14544 E3 ubiquitin-protein ligase RING1-like (EC 2.3.2.27) (RING finger protein 1) (RING-type E3 ubiquitin transferase RING1-like),RING/U-box superfamily protein,E3 ubiquitin-protein ligase RING1-like protein metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],ligase activity [GO:0016874] TISSUE SPECIFICITY: Expressed in leaves, roots, trichomes, stipules, and also in anthers and stigma of flowers. {ECO:0000269|PubMed:20376576}. locus:2092231;,locus:2011937; AT3G19950,AT1G50350 E3 ubiquitin-protein ligase Os10g0487400 protein,Os06g0101300 protein (Putative ring finger protein 126 isoform 1) (cDNA clone:J033105E24, full insert sequence),Os10g0487400 protein (Putative zinc finger protein) (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J033094G14, full insert sequence) Q0IWU5,Q5VME8,Q7XD81 Q0IWU5_ORYSJ,Q5VME8_ORYSJ,Q7XD81_ORYSJ Os10g0487400 OSNPB_100487400,Os06g0101300 B1460A05.26 OsJ_19796 OSJNBa0075G19.4 OSNPB_060101300,Os10g0487400 LOC_Os10g34590 OSJNBa0029C15.10 OSNPB_100487400 ENOG411DT36 T15B3_130,F21P8.10 Q9LXW1,Q8RXT5,O65464,A0A1P8B497,F4IRK4 Q9LXW1_ARATH,Q8RXT5_ARATH,O65464_ARATH,A0A1P8B497_ARATH,F4IRK4_ARATH Bromo-adjacent homology (BAH) domain-containing protein (Uncharacterized protein T15B3_130),Bromo-adjacent homology (BAH) domain-containing protein (Uncharacterized protein At4g11560),Bromo-adjacent homology (BAH) domain-containing protein (Uncharacterized protein AT4g23120) (Uncharacterized protein F21P8.10) (Uncharacterized protein F7H19.310),Bromo-adjacent homology (BAH) domain-containing protein 44419,66458,42037,55472,44793 Bromo-adjacent homology (BAH) domain-containing protein (Uncharacterized protein T15B3_130),Bromo-adjacent homology (BAH) domain-containing protein (Uncharacterized protein At4g11560),Bromo-adjacent homology (BAH) domain-containing protein (Uncharacterized protein AT4g23120) (Uncharacterized protein F21P8.10) (Uncharacterized protein F7H19.310),Bromo-adjacent homology (BAH) domain-containing protein chromatin binding [GO:0003682]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; chromatin binding [GO:0003682]; transcription, DNA-templated [GO:0006351] locus:2097134;,locus:2123136;,locus:2121601;,locus:2040209; AT3G43990,AT4G11560,AT4G23120,AT2G25120 domain -containing protein Os01g0527400 protein (cDNA clone:J033121F02, full insert sequence) Q5QLH2 Q5QLH2_ORYSJ Os01g0527400 B1074C08.29 B1147B04.38 OSNPB_010527400 ENOG411DT31 Q9ZVD1 Q9ZVD1_ARATH At2g27090 (BZIP transcription factor (DUF630 and DUF632)) (Uncharacterized protein At2g27090) 83737 At2g27090 (BZIP transcription factor (DUF630 and DUF632)) (Uncharacterized protein At2g27090) plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2059284; AT2G27090 Protein of unknown function (DUF632) Expressed protein (Os03g0321500 protein) Q10M67 Q10M67_ORYSJ Os03g0321500 LOC_Os03g20530 Os03g0321500 OsJ_10657 OSNPB_030321500 ENOG411DT30 HMGS P54873 HMCS_ARATH Hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase) (EC 2.3.3.10) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (Protein EMBRYO DEFECTIVE 2778) (Protein FLAKY POLLEN 1) DISRUPTION PHENOTYPE: Defect in pollen adhesion to the stigma resulting in male sterility under normal growth conditions. {ECO:0000269|PubMed:20484369}. Male sterile-K. Nakamura-2010 FUNCTION: This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Devoided of acetoacetyl-CoA thiolase (AACT) activity. Required for the development of both tapetosomes and elaioplasts in tapetal cells and for pollen viability during pollen tube elongation. {ECO:0000269|PubMed:20484369}. PATHWAY: Metabolic intermediate biosynthesis; (R)-mevalonate biosynthesis; (R)-mevalonate from acetyl-CoA: step 2/3. ARA:AT4G11820-MONOMER;MetaCyc:AT4G11820-MONOMER; R-ATH-191273;R-ATH-77111; 2.3.3.10; 2.3.3.10 51094 Hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase) (EC 2.3.3.10) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (Protein EMBRYO DEFECTIVE 2778) (Protein FLAKY POLLEN 1) cytosol [GO:0005829]; plasmodesma [GO:0009506]; hydroxymethylglutaryl-CoA synthase activity [GO:0004421]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287]; sterol biosynthetic process [GO:0016126] TISSUE SPECIFICITY: Highly expressed in flower buds, pollen grains and anthers in the tapetal cells, at an intermediate levels in roots and weakly in leaves. {ECO:0000269|PubMed:20484369}. locus:2137015; AT4G11820 hydroxymethylglutaryl-CoA synthase 3-hydroxy-3-methylglutaryl coenzyme A synthase (HMG-CoA synthase) (EC 2.3.3.10) Q6ZBH5,A3ADI5,Q64MA9 Q6ZBH5_ORYSJ,A3ADI5_ORYSJ,Q64MA9_ORYSJ Os08g0544900 Os08g0544900 OsJ_28159 OSNPB_080544900 P0623F08.33,Os03g0118800 OsJ_09191 OSNPB_030118800,Os09g0521400 Os09g0521400 OsJ_17425 OSJNOa273B05.1 OSNPB_090521400 FUNCTION: This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. {ECO:0000256|RuleBase:RU364071}. ENOG411DT33 F28O9.190,MJJ3.16 Q9M2L3,Q9FFK2 Q9M2L3_ARATH,Q9FFK2_ARATH AT3G57340 protein (DnaJ heat shock amino-terminal domain protein (DUF1977)) (DnaJ-like protein),DNAJ heat shock N-terminal domain-containing protein (DnaJ-like protein) (Putative DnaJ protein) 41320,32338 AT3G57340 protein (DnaJ heat shock amino-terminal domain protein (DUF1977)) (DnaJ-like protein),DNAJ heat shock N-terminal domain-containing protein (DnaJ-like protein) (Putative DnaJ protein) plasma membrane [GO:0005886] locus:2082538;,locus:2166404; AT3G57340,AT5G05750 chaperone protein DnaJ DnaJ-like protein (Os01g0556400 protein) (cDNA, clone: J100074N19, full insert sequence) Q8S0V9 Q8S0V9_ORYSJ Os01g0556400 OJ1014_G12.16 OsJ_02207 OSNPB_010556400 ENOG411DT32 HEMB1 Q9SFH9 HEM21_ARATH Delta-aminolevulinic acid dehydratase 1, chloroplastic (ALADH1) (EC 4.2.1.24) (Porphobilinogen synthase) DISRUPTION PHENOTYPE: Embryo lethal when homozygous. Impaired plant growth and development. {ECO:0000269|PubMed:22634759}. FUNCTION: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen (By similarity). {ECO:0000250}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. R-ATH-189451;R-ATH-6798695; 4.2.1.24 46690 Delta-aminolevulinic acid dehydratase 1, chloroplastic (ALADH1) (EC 4.2.1.24) (Porphobilinogen synthase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; porphobilinogen synthase activity [GO:0004655]; zinc ion binding [GO:0008270]; chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; porphyrin-containing compound biosynthetic process [GO:0006779]; protoporphyrinogen IX biosynthetic process [GO:0006782] TISSUE SPECIFICITY: Highly expressed in cotyledons during dark-to-light transition. {ECO:0000269|PubMed:22634759}. locus:2205035; AT1G69740 delta-aminolevulinic acid dehydratase Delta-aminolevulinic acid dehydratase, chloroplastic (ALADH) (EC 4.2.1.24) (Porphobilinogen synthase) Q5Z8V9 HEM2_ORYSJ HEMB Os06g0704600 LOC_Os06g49110 OsJ_22561 P0018H04.2 FUNCTION: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen (By similarity). {ECO:0000250}. ENOG411DT39 F27H5_100 Q9LY34 Q9LY34_ARATH Acyl-CoA synthetase family protein (Uncharacterized protein At3g60310) (Uncharacterized protein F27H5_100) 76490 Acyl-CoA synthetase family protein (Uncharacterized protein At3g60310) (Uncharacterized protein F27H5_100) locus:2081912; AT3G60310 NA Os06g0149200 protein A0A0P0WSW6 A0A0P0WSW6_ORYSJ Os06g0149200 OSNPB_060149200 ENOG411DT38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1785) Protein argonaute 11 (OsAGO11),Protein argonaute 12 (OsAGO12),Os03g0682600 protein,Os03g0682200 protein (Fragment) Q10F39,Q7Y001,A0A0P0W1C8,A0A0P0W265 AGO11_ORYSJ,AGO12_ORYSJ,A0A0P0W1C8_ORYSJ,A0A0P0W265_ORYSJ AGO11 Os03g0682600 LOC_Os03g47830 OSJNBb0070O09.7,AGO12 Os03g0682200 LOC_Os03g47820 OSJNBb0070O09.6,Os03g0682600 OSNPB_030682600,Os03g0682200 OSNPB_030682200 FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411DT3E RBL20,RBL18 Q9LET3,Q8RXQ2,A0A1P8B0Y3 RBL20_ARATH,RBL18_ARATH,A0A1P8B0Y3_ARATH Rhomboid-like protein 20 (AtRBL20),Rhomboid-like protein 18 (AtRBL18),Ubiquitin-associated (UBA) protein FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:16895613}. 32378,31690,22996 Rhomboid-like protein 20 (AtRBL20),Rhomboid-like protein 18 (AtRBL18),Ubiquitin-associated (UBA) protein integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252]; ubiquitin binding [GO:0043130],integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2103625;,locus:2063182; AT3G56740,AT2G41160 domain-containing protein Os01g0268800 protein (cDNA clone:001-204-B06, full insert sequence) (cDNA clone:J033024L23, full insert sequence),Os01g0806000 protein Q9SDB9,A0A0P0V9G8 Q9SDB9_ORYSJ,A0A0P0V9G8_ORYSJ Os01g0268800 Os01g0268800 OSNPB_010268800 P0011D01.31 P0667A10.5,Os01g0806000 OSNPB_010806000 ENOG411DT3D TOP6B Q9C5V6 TOP6B_ARATH DNA topoisomerase 6 subunit B (AtTOP6B) (EC 5.99.1.3) (Protein BRASSINOSTEROID INSENSITIVE 3) (Protein ELONGATED HYPOCOTYL 6) (Protein ROOT HAIRLESS 3) DISRUPTION PHENOTYPE: Plants are defective in cell elongation and show a severe dwarf phenotype. {ECO:0000269|PubMed:12119417}. Complete absence of root hairs abnormal patterning of leaf epidermis and dwarfism. Seedling lethal-J. Chory-2002 FUNCTION: Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP. Involved in cell-elongation processes. {ECO:0000255|HAMAP-Rule:MF_03165, ECO:0000269|PubMed:12119417, ECO:0000269|PubMed:12401175}. 5.99.1.3 75852 DNA topoisomerase 6 subunit B (AtTOP6B) (EC 5.99.1.3) (Protein BRASSINOSTEROID INSENSITIVE 3) (Protein ELONGATED HYPOCOTYL 6) (Protein ROOT HAIRLESS 3) cytosol [GO:0005829]; DNA topoisomerase complex (ATP-hydrolyzing) [GO:0009330]; nucleus [GO:0005634]; small ribosomal subunit [GO:0015935]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; identical protein binding [GO:0042802]; protein homodimerization activity [GO:0042803]; structural constituent of ribosome [GO:0003735]; cell morphogenesis [GO:0000902]; DNA endoreduplication [GO:0042023]; DNA topological change [GO:0006265]; pattern specification process [GO:0007389]; response to brassinosteroid [GO:0009741]; ribosome biogenesis [GO:0042254]; translation [GO:0006412]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Highly expressed in leaves, stems, flowers and seedlings. {ECO:0000269|PubMed:11410368}. locus:2091916; AT3G20780 topoisomerase 6 subunit DNA topoisomerase 6 subunit B (OsTOP6B) (EC 5.99.1.3) Q6H442 TOP6B_ORYSJ TOP6B Os09g0279600 LOC_Os09g10770 OsJ_28656 P0651G05.4 FUNCTION: Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP (By similarity). {ECO:0000250}. ENOG411DT3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os11g0549537 protein A0A0P0Y359 A0A0P0Y359_ORYSJ Os11g0549537 OSNPB_110549537 ENOG411DT3F HST,F26K24.24 Q1ACB3,Q9SF04,F4J8K0 HSTC_ARATH,Q9SF04_ARATH,F4J8K0_ARATH Homogentisate solanesyltransferase, chloroplastic (AtHST) (EC 2.5.1.117) (Homogentisate phytyltransferase 2) (AtHPT2) (Vitamin E pathway gene 2-2 protein) (AtVTE2-2),F26K24.24 protein (TRAF-like superfamily protein) (Uncharacterized protein At3g11950),Homogentisate prenyltransferase FUNCTION: Involved in the synthesis of plastoquinone-9. Can use both homogentisic acid and 2,5-dihydroxyphenylacetic acid gamma-lactone as prenyl acceptors, and solanesyl diphosphate > farnesyl diphosphate > geranylgeranyl diphosphate >> phytyl diphosphate as prenyl donors. Do not catalyze the decardoxylation of homogentisate uncoupled from prenylation. {ECO:0000269|PubMed:16408209, ECO:0000269|PubMed:16989822, ECO:0000269|PubMed:20400515}. MISCELLANEOUS: Seeds overexpressing HST accumulate increased levels of tocopherol. {ECO:0000305|PubMed:16408209}. 2.5.1.115;2.5.1.117;,2.5.1.117; 2.5.1.117 42841,64232,43650 Homogentisate solanesyltransferase, chloroplastic (AtHST) (EC 2.5.1.117) (Homogentisate phytyltransferase 2) (AtHPT2) (Vitamin E pathway gene 2-2 protein) (AtVTE2-2),F26K24.24 protein (TRAF-like superfamily protein) (Uncharacterized protein At3g11950),Homogentisate prenyltransferase chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; homogentisate solanyltransferase activity [GO:0102661],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; zinc ion binding [GO:0008270],chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; homogentisate farnesyltransferase activity [GO:0010355]; homogentisate geranylgeranyltransferase activity [GO:0010356]; homogentisate solanesyltransferase activity [GO:0010357]; carotenoid biosynthetic process [GO:0016117]; plastoquinone biosynthetic process [GO:0010236] locus:2081561;,locus:4010713740; AT3G11945,AT3G11950 fat-soluble vitamin metabolic process Probable homogentisate phytyltransferase 2, chloroplastic (EC 2.5.1.115) (Vitamin E pathway gene 2-2 protein) (OsVTE2-2),Os07g0576000 protein (Fragment) Q0D576,A0A0P0X7U9 HPT2_ORYSJ,A0A0P0X7U9_ORYSJ HPT2 VTE2-2 Os07g0576000 LOC_Os07g38850 OJ1065_B06.2-1 OsJ_24854,Os07g0576000 OSNPB_070576000 FUNCTION: Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone (By similarity). {ECO:0000250}. ENOG411DT3A AAE15,AAE16 Q8W471,Q9LK39 AAE15_ARATH,AAE16_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic (EC 6.2.1.20) (Acyl-[acyl-carrier-protein] synthetase) (Acyl-activating enzyme 15),Probable acyl-activating enzyme 16, chloroplastic (EC 6.2.1.-) 10% reduccion in elongation activity of [1-14C]8:0 into both C16 and C18 FAs when compared to wild-type. Elongation with [1-14C]12:0 substrate was reduced 20%. 40% reduction of in vitro acyl-ACP synthase activity. Reduced 14C fatty acid elongation; No other phenotypes detected-J. Ohlrogge-2005 FUNCTION: Probably involved in the activation of fatty acids to acyl-carrier-protein prior to fatty acid elongation in plastids. Acts on medium- to long-chain fatty acids. {ECO:0000269|PubMed:16262711}.,FUNCTION: May be involved in the activation of fatty acids to acyl-carrier-protein. {ECO:0000250, ECO:0000269|PubMed:16262711}. ARA:AT4G14070-MONOMER;,ARA:AT3G23790-MONOMER; R-ATH-75876; 6.2.1.20,6.2.1.- 81466,81148 Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic (EC 6.2.1.20) (Acyl-[acyl-carrier-protein] synthetase) (Acyl-activating enzyme 15),Probable acyl-activating enzyme 16, chloroplastic (EC 6.2.1.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; plastid [GO:0009536]; long-chain fatty acid [acyl-carrier-protein] ligase activity [GO:0008922]; fatty acid elongation [GO:0030497],chloroplast envelope [GO:0009941]; ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631] locus:2129371;,locus:2095173; AT4G14070,AT3G23790 fatty acid metabolic process AMP-binding protein, putative, expressed (Os03g0845500 protein) (Putative AMP-binding protein),Os09g0512200 protein (Fragment) Q75LB3,C7J6H4 Q75LB3_ORYSJ,C7J6H4_ORYSJ OSJNBa0032G11.28 LOC_Os03g62850 Os03g0845500 OsJ_13349 OSNPB_030845500,Os09g0512200 OSNPB_090512200 ENOG411DT3C PAM71-HL Q9T0H9,F4JT38 PA71H_ARATH,F4JT38_ARATH Protein PAM71-homolog, chloroplastic (GDT1-like protein 2) (PHOTOSYNTHESIS AFFECTED MUTANT71-homolog),Uncharacterized protein family (UPF0016) FUNCTION: Probable chloroplast-localized Mn(2+)/H(+) and/or Ca(2+)/H(+) antiporter regulating Ca(2+), Mn(2+) and pH homeostasis. {ECO:0000250|UniProtKB:Q94AX5}. 37929,37891 Protein PAM71-homolog, chloroplastic (GDT1-like protein 2) (PHOTOSYNTHESIS AFFECTED MUTANT71-homolog),Uncharacterized protein family (UPF0016) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2140872; AT4G13590 GDT1-like protein 2 GDT1-like protein 2, chloroplastic Q2R2Z4 GDT12_ORYSJ Os11g0544500 LOC_Os11g34180 OsJ_34180 ENOG411DT3B PSBO1,PSBO2 P23321,Q9S841 PSBO1_ARATH,PSBO2_ARATH Oxygen-evolving enhancer protein 1-1, chloroplastic (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (Manganese-stabilizing protein 1) (MSP-1) (OEC 33 kDa subunit),Oxygen-evolving enhancer protein 1-2, chloroplastic (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (Manganese-stabilizing protein 2) (MSP-2) (OEC 33 kDa subunit) Overall increase of PSII proteins (CP43 D1 D2 Lhcb2 PsbP) in the mutant to about 138% in the compared to wild-type levels.,The mutant grew faster than psbo1 but more slowly than WT. Leaves are dark green more elongated and with bent edges. Dwarf-F. Sato-2002,Slow growth; Long, dark green leaves with bent margins-C. Spetea-2007 FUNCTION: Stabilizes the manganese cluster which is the primary site of water splitting. {ECO:0000269|PubMed:12123820, ECO:0000269|PubMed:15722336}.,FUNCTION: Stabilizes the manganese cluster which is the primary site of water splitting. Regulates dephosphorylation and turnover of the PSII reaction center D1 protein. {ECO:0000269|PubMed:15722336, ECO:0000269|PubMed:17217465}. MISCELLANEOUS: PSBO1 is the major isoform in the wild-type and it cannot be fully complemented by PSBO2. MetaCyc:AT5G66570-MONOMER; 35142,35019 Oxygen-evolving enhancer protein 1-1, chloroplastic (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (Manganese-stabilizing protein 1) (MSP-1) (OEC 33 kDa subunit),Oxygen-evolving enhancer protein 1-2, chloroplastic (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (Manganese-stabilizing protein 2) (MSP-2) (OEC 33 kDa subunit) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; integral component of membrane [GO:0016021]; photosystem II oxygen evolving complex [GO:0009654]; plastid thylakoid membrane [GO:0055035]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; oxygen evolving activity [GO:0010242]; poly(U) RNA binding [GO:0008266]; defense response to bacterium [GO:0042742]; photoinhibition [GO:0010205]; photosynthesis, light reaction [GO:0019684]; photosystem II assembly [GO:0010207]; photosystem II stabilization [GO:0042549]; regulation of protein dephosphorylation [GO:0035304],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; integral component of membrane [GO:0016021]; photosystem II oxygen evolving complex [GO:0009654]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; poly(U) RNA binding [GO:0008266]; photoinhibition [GO:0010205]; photosynthesis, light reaction [GO:0019684]; photosystem II assembly [GO:0010207]; photosystem II stabilization [GO:0042549]; regulation of protein dephosphorylation [GO:0035304] TISSUE SPECIFICITY: Leaves. locus:2154940;,locus:2077972; AT5G66570,AT3G50820 oxygen-evolving enhancer protein 1 Os01g0501800 protein (Putative 33kDa oxygen evolving protein of photosystem II) (cDNA clone:001-013-B04, full insert sequence) (cDNA clone:001-029-A06, full insert sequence) (cDNA clone:001-038-G12, full insert sequence) (cDNA clone:001-039-G10, full insert sequence) (cDNA clone:006-311-B02, full insert sequence) Q943W1 Q943W1_ORYSJ Os01g0501800 Os01g0501800 B1080D07.27 OsJ_01921 OSNPB_010501800 ENOG411DT3M MNJ8.8 Q9FHT6,A0A1P8BDQ7 Q9FHT6_ARATH,A0A1P8BDQ7_ARATH ARM repeat superfamily protein (At5g37290),ARM repeat superfamily protein 20324,14627 ARM repeat superfamily protein (At5g37290),ARM repeat superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2169165; AT5G37290 Armadillo repeat-containing protein Os11g0546200 protein B9GB45 B9GB45_ORYSJ Os11g0546200 OsJ_34196 OSNPB_110546200 ENOG411DT3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1719) Expressed protein (Os11g0459300 protein),Os04g0105900 protein,Os12g0483450 protein,Os12g0483300 protein Q2R4W1,A0A0P0W6L4,A0A0P0YA76,A0A0P0YA38 Q2R4W1_ORYSJ,A0A0P0W6L4_ORYSJ,A0A0P0YA76_ORYSJ,A0A0P0YA38_ORYSJ LOC_Os11g27110 Os11g0459300 OSNPB_110459300,Os04g0105900 OSNPB_040105900,Os12g0483450 OSNPB_120483450,Os12g0483300 OSNPB_120483300 ENOG411DT3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor A-2a (Heat shock protein 41) (Heat stress transcription factor 11) (OsHsf-11) (Heat stress transcription factor 4) (rHsf4),Os03g0745000 protein,Os03g0745000 protein (Fragment) Q84MN7,A0A0P0W2W8,A0A0P0W2V3 HFA2A_ORYSJ,A0A0P0W2W8_ORYSJ,A0A0P0W2V3_ORYSJ HSFA2A HSF11 HSF4 RHSP2 Os03g0745000 LOC_Os03g53340 OsJ_012039 OSJNBb0036F07.17,Os03g0745000 OSNPB_030745000 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DT3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein (Os12g0198900 protein),Os09g0517200 protein (Putative resistance protein),Os09g0517100 protein (Fragment),Os09g0517100 protein Q2QWD6,Q69MT5,Q0J0C3,A0A0P0XP47 Q2QWD6_ORYSJ,Q69MT5_ORYSJ,Q0J0C3_ORYSJ,A0A0P0XP47_ORYSJ Os12g0198900 LOC_Os12g09710 OsJ_35534 OSNPB_120198900,Os09g0517200 OsJ_30022 OSJNBb0034B12.23 OSNPB_090517200,Os09g0517100 Os09g0517100 OSNPB_090517100,Os09g0517100 OSNPB_090517100 ENOG411DT3K T9C5.150,HP30-2 Q9SCK3,Q9FLT9 Q9SCK3_ARATH,Q9FLT9_ARATH At3g49560 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) (Uncharacterized protein At3g49560) (Uncharacterized protein T9C5.150),At5g24650 (At5g24650/K18P6_19) (Emb|CAB62460.1) (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) FUNCTION: Together with HP30-2 and HP20, triggers the import and insertion of transit sequence-less multi-pass transmembrane proteins (e.g. CEQORH) into the chloroplastic inner membrane. {ECO:0000269|PubMed:24248378}.,FUNCTION: Together with HP30-1 and HP20, triggers the import and insertion of transit sequence-less multi-pass transmembrane proteins (e.g. CEQORH) into the chloroplastic inner membrane. {ECO:0000269|PubMed:24248378}. 27982,27772 At3g49560 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) (Uncharacterized protein At3g49560) (Uncharacterized protein T9C5.150),At5g24650 (At5g24650/K18P6_19) (Emb|CAB62460.1) (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; protein channel activity [GO:0015266]; protein self-association [GO:0043621]; mitochondrion organization [GO:0007005]; protein localization to organelle [GO:0033365]; tRNA import into mitochondrion [GO:0016031],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; protein channel activity [GO:0015266]; protein self-association [GO:0043621]; mitochondrion organization [GO:0007005]; protein localization to organelle [GO:0033365]; tRNA import into mitochondrion [GO:0016031] locus:2114723;,locus:2153959; AT3G49560,AT5G24650 Mitochondrial import inner membrane translocase subunit Tim17 Tim22 Tim23 family protein Os02g0526500 protein (cDNA clone:J013120F02, full insert sequence),Os04g0405100 protein B7EDW5,A0A0P0W9R6 B7EDW5_ORYSJ,A0A0P0W9R6_ORYSJ Os02g0526500 OSNPB_020526500,Os04g0405100 OSNPB_040405100 ENOG411DT3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family GRAS family transcription factor containing protein, expressed (Os12g0573200 protein) (cDNA clone:J013002M11, full insert sequence) (cDNA clone:J033107F03, full insert sequence) Q2QNA3 Q2QNA3_ORYSJ Os12g0573200 LOC_Os12g38490 Os12g0573200 OsJ_36602 OSNPB_120573200 ENOG411DT3U Q9XID3 Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (EC 2.7.11.1) 2.7.11.1 91293 G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544] locus:2026155; AT1G34300 serine threonine-protein kinase Lectin protein kinase family protein, putative, expressed (Os03g0838100 protein) (Putative receptor-like protein kinase) (cDNA clone:002-179-G09, full insert sequence),Os07g0415500 protein Q851M7,C7J556 Q851M7_ORYSJ,C7J556_ORYSJ OSJNBa0042I09.17 LOC_Os03g62180 Os03g0838100 OsJ_13290 OSNPB_030838100,Os07g0415500 Os07g0415500 OSNPB_070415500 ENOG411DT3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plasma membrane NA NA NA NA NA NA NA ENOG411DT3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os10g0482200 protein,Os07g0222200 protein (Fragment),Os10g0481832 protein,Os10g0481666 protein A0A0P0XVH5,A0A0P0X3Y3,A0A0P0XWB9,A0A0N7KRY9 A0A0P0XVH5_ORYSJ,A0A0P0X3Y3_ORYSJ,A0A0P0XWB9_ORYSJ,A0A0N7KRY9_ORYSJ Os10g0482200 OSNPB_100482200,Os07g0222200 OSNPB_070222200,Os10g0481832 OSNPB_100481832,Os10g0481666 OSNPB_100481666 ENOG411DT3V Q9SXC8 UFC1_ARATH Ubiquitin-fold modifier-conjugating enzyme 1 (Ufm1-conjugating enzyme 1) FUNCTION: E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage. {ECO:0000250}. 19611 Ubiquitin-fold modifier-conjugating enzyme 1 (Ufm1-conjugating enzyme 1) cytoplasm [GO:0005737]; UFM1 transferase activity [GO:0071568]; protein K69-linked ufmylation [GO:1990592] locus:2196879; AT1G27530 ubiquitin-fold modifier-conjugating enzyme Ubiquitin-fold modifier-conjugating enzyme 1 (Ufm1-conjugating enzyme 1) Q8S625 UFC1_ORYSJ Os10g0205200 LOC_Os10g13800 OSJNBb0048O22.2 FUNCTION: E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage. {ECO:0000250}. ENOG411DT3Q EME1B,EME1A C5H8J1,Q84M98,A0A1P8AYE0,A0A1P8B1X7 EME1B_ARATH,EME1A_ARATH,A0A1P8AYE0_ARATH,A0A1P8B1X7_ARATH Crossover junction endonuclease EME1B (EC 3.1.22.-) (Essential meiotic endonuclease 1B) (AtEME1B),Crossover junction endonuclease EME1A (EC 3.1.22.-) (Essential meiotic endonuclease 1A) (AtEME1A),Essential meiotic endonuclease 1A,Essential meiotic endonuclease 1B FUNCTION: Interacts with MUS81 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, D-loops, replication forks, nicked Holliday junctions and also intact Holliday junctions with a reduced efficiency. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. Plays a role in DNA repair and in genotoxic stress-induced homologous recombination (HR) in somatic cells. Mediates a subset of meiotic recombination events that are insensitive to crossover interference. {ECO:0000269|PubMed:19339504}. 3.1.22.- 62193,61239,50167,45785 Crossover junction endonuclease EME1B (EC 3.1.22.-) (Essential meiotic endonuclease 1B) (AtEME1B),Crossover junction endonuclease EME1A (EC 3.1.22.-) (Essential meiotic endonuclease 1A) (AtEME1A),Essential meiotic endonuclease 1A,Essential meiotic endonuclease 1B Holliday junction resolvase complex [GO:0048476]; nucleus [GO:0005634]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; cell division [GO:0051301]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; meiotic cell cycle [GO:0051321],Holliday junction resolvase complex [GO:0048476]; nucleus [GO:0005634]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; DNA repair [GO:0006281] locus:2055961;,locus:2052484; AT2G22140,AT2G21800 Interacts with MUS81 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'- flap structures D-loops replication forks nicked Holliday junctions and also intact Holliday junctions with a reduced efficiency. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. Plays a role in DNA repair and in genotoxic stress-induced homologous recombination (HR) in somatic cells. Mediates a subset of meiotic recombination events that are insensitive to crossover interference Crossover junction endonuclease EME1 (EC 3.1.22.-) (Essential meiotic endonuclease 1) (OsEME1) Q0J9J6 EME1_ORYSJ EME1 Os04g0648700 LOC_Os04g55500 OsJ_16416 OSJNBa0010D21.8 FUNCTION: Interacts with MUS81 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, D-loops, replication forks, nicked Holliday junctions and also intact Holliday junctions with a reduced efficiency. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. Plays a role in DNA repair and in genotoxic stress-induced homologous recombination (HR) in somatic cells. Mediates a subset of meiotic recombination events that are insensitive to crossover interference (By similarity). {ECO:0000250}. ENOG411DT3P RPPL1 Q9LRR4 R13L1_ARATH Putative disease resistance RPP13-like protein 1 FUNCTION: Potential disease resistance protein. 121418 Putative disease resistance RPP13-like protein 1 plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; plant-type hypersensitive response [GO:0009626]; signal transduction [GO:0007165] locus:2091672; AT3G14470 Disease resistance protein Os04g0512900 protein (Fragment),Os11g0481150 protein,Os07g0273900 protein,Os01g0808000 protein (Putative NBS-LRR type resistance protein),Os05g0492200 protein (cDNA, clone: J100005E18, full insert sequence),Os05g0492600 protein,Os01g0308300 protein,Os09g0314200 protein,Os06g0667900 protein,Os07g0273600 protein (Fragment) Q0JBS3,B9GAN9,A3BIJ9,Q94J89,B7F9W6,Q0DH44,C7IX68,A0A0P0XJZ1,A0A0P0WZP5,A0A0P0X4N9 Q0JBS3_ORYSJ,B9GAN9_ORYSJ,A3BIJ9_ORYSJ,Q94J89_ORYSJ,B7F9W6_ORYSJ,Q0DH44_ORYSJ,C7IX68_ORYSJ,A0A0P0XJZ1_ORYSJ,A0A0P0WZP5_ORYSJ,A0A0P0X4N9_ORYSJ Os04g0512900 Os04g0512900 OSNPB_040512900,Os11g0481150 OsJ_33886 OSNPB_110481150,Os07g0273900 OsJ_23818 OSNPB_070273900,Os01g0808000 OsJ_03811 OSNPB_010808000 P0702B09.40,Os05g0492200 OSNPB_050492200,Os05g0492600 Os05g0492600 OSNPB_050492600,Os01g0308300 Os01g0308300 OSNPB_010308300,Os09g0314200 OSNPB_090314200,Os06g0667900 OSNPB_060667900,Os07g0273600 OSNPB_070273600 ENOG411DT3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0156000 protein A0A0P0VF58 A0A0P0VF58_ORYSJ Os02g0156000 OSNPB_020156000 ENOG411DT3R LRK10L-1.1,LRK10L-1.3,LRK10L-1.4,LRK10L-1.2,MXA21.10 Q9C6K9,Q8VYG0,F4HQ17,P0C5E2,Q5XVH3,A0A1P8BDK9,A0A1P8ANH8,A0A1P8BDJ0,A0A1P8ANI2,F4HQ34 LRL11_ARATH,LRL13_ARATH,LRL14_ARATH,LRL12_ARATH,Q5XVH3_ARATH,A0A1P8BDK9_ARATH,A0A1P8ANH8_ARATH,A0A1P8BDJ0_ARATH,A0A1P8ANI2_ARATH,F4HQ34_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.1),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.3),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.4),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.2),Wall-associated receptor kinase carboxy-terminal protein,Protein kinase family protein,Protein kinase superfamily protein DISRUPTION PHENOTYPE: ABA-insensitive and drought stress-semsitive. Late flowering. {ECO:0000269|PubMed:25533478}. FUNCTION: Probable receptor-like serine/threonine-protein kinase involved in abscisic acid (ABA) signaling. Acts as a positive regulator of abiotic stress response. {ECO:0000269|PubMed:25533478}. 2.7.11.1 70856,75294,74127,72862,15797,77323,102109,75234,74967,24857 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.1),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.3),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.4),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.2),Wall-associated receptor kinase carboxy-terminal protein,Protein kinase family protein,Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to water deprivation [GO:0042631]; photoperiodism, flowering [GO:0048573],kinase activity [GO:0016301],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],kinase activity [GO:0016301]; polysaccharide binding [GO:0030247] locus:2031230;,locus:2176667;,locus:2204465;,locus:2014154;,locus:504956285; AT1G25390,AT5G38210,AT1G66880,AT1G18390,AT1G67025 serine threonine-protein kinase Os01g0689900 protein (Wall-associated kinase 4-like),Os01g0136400 protein (Serine/threonine-specific protein kinase-like) (cDNA clone:J013020L24, full insert sequence),(Rice Genome Annotation Project) OsWAK10a - OsWAK receptor-like cytoplasmic kinase (Os01g0689900 protein) (Wall-associated kinase 4-like),Os04g0113100 protein (Fragment),Os01g0689900 protein (Fragment),Os05g0550800 protein Q5N7Q8,Q5ZC67,Q5N7Q7,A0A0P0W621,A0A0P0V6W9,A0A0P0WPZ5 Q5N7Q8_ORYSJ,Q5ZC67_ORYSJ,Q5N7Q7_ORYSJ,A0A0P0W621_ORYSJ,A0A0P0V6W9_ORYSJ,A0A0P0WPZ5_ORYSJ P0034C09.1-1 Os01g0689900 OSNPB_010689900,Os01g0136400 OSNPB_010136400 P0443D08.10,P0034C09.1-2 Os01g0689900 OSNPB_010689900,Os04g0113100 OSNPB_040113100,Os01g0689900 OSNPB_010689900,Os05g0550800 OSNPB_050550800 ENOG411DT3Y Q9SJV8 Q9SJV8_ARATH Expressed protein (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) 24764 Expressed protein (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2045771; AT2G01080 harpin-induced protein Harpin-induced protein 1 containing protein, expressed (Os03g0262700 protein) (cDNA clone:006-207-C07, full insert sequence) (cDNA clone:006-304-A05, full insert sequence) (cDNA clone:J023074F15, full insert sequence) (cDNA clone:J033014L15, full insert sequence) Q10NQ5 Q10NQ5_ORYSJ Os03g0262700 LOC_Os03g15630 OsJ_10224 OSNPB_030262700 ENOG411DT3X TIF3I1,TRIP-1 Q38884,F4II66,F4II65 EIF3I_ARATH,F4II66_ARATH,F4II65_ARATH Eukaryotic translation initiation factor 3 subunit I (eIF3i) (Eukaryotic translation initiation factor 3 subunit 2) (TGF-beta receptor-interacting protein 1) (TRIP-1) (eIF-3-beta) (eIF3 p36),Eukaryotic translation initiation factor 3 subunit I (eIF3i),TGF-beta receptor interacting protein 1 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03008}.,FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03008}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 36388,38996,28335 Eukaryotic translation initiation factor 3 subunit I (eIF3i) (Eukaryotic translation initiation factor 3 subunit 2) (TGF-beta receptor-interacting protein 1) (TRIP-1) (eIF-3-beta) (eIF3 p36),Eukaryotic translation initiation factor 3 subunit I (eIF3i),TGF-beta receptor interacting protein 1 Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; eukaryotic translation initiation factor 3 complex [GO:0005852]; translation initiation factor activity [GO:0003743]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; plasmodesma [GO:0009506]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446] locus:2063009;,locus:2062994; AT2G46280,AT2G46290 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit I (eIF3i),Os11g0606300 protein (Fragment) Q60EF6,Q6YS69,A0A0P0Y4N2 Q60EF6_ORYSJ,Q6YS69_ORYSJ,A0A0P0Y4N2_ORYSJ Os05g0256000 OsJ_17829 OSNPB_050256000 P0537C11.10,B1052H09.108 Os08g0308100 OSJNBa0024A05.3 OSJNBa0038J12.16 OSJNBa0061E21.121 OSNPB_080308100,Os11g0606300 OSNPB_110606300 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03008}. ENOG411DT3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor A-2d (Heat stress transcription factor 7) (rHsf7) (Heat stress transcription factor 8) (OsHsf-08) Q8H7Y6 HFA2D_ORYSJ HSFA2D HSF08 HSF7 Os03g0161900 LOC_Os03g06630 OJ1607A12.12 OsJ_009160 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411EE7Q MPA22.6 Q9SK38,Q8VYE1,Q1PE81,F4JMS0,F4JLL4,F4K779,F4JJC8,F4JJC7,F4JLL3 Q9SK38_ARATH,Q8VYE1_ARATH,Q1PE81_ARATH,F4JMS0_ARATH,F4JLL4_ARATH,F4K779_ARATH,F4JJC8_ARATH,F4JJC7_ARATH,F4JLL3_ARATH Transmembrane protein, putative (DUF239) (Uncharacterized protein At2g24950),NEP-interacting protein, putative (DUF239) (Uncharacterized protein At1g10190),NEP-interacting protein, putative (DUF239),Transmembrane protein, putative (DUF239),Uncharacterized protein 47621,45270,45168,46423,45166,21841,25408,46537,44460 Transmembrane protein, putative (DUF239) (Uncharacterized protein At2g24950),NEP-interacting protein, putative (DUF239) (Uncharacterized protein At1g10190),NEP-interacting protein, putative (DUF239),Transmembrane protein, putative (DUF239),Uncharacterized protein integral component of membrane [GO:0016021] locus:2047385;,locus:2012783;,locus:2129625;,locus:2127143;,locus:2122739;,locus:2169876;,locus:504955424;,locus:504955423;,locus:2122729; AT2G24950,AT1G10190,AT4G15050,AT4G23080,AT4G10220,AT5G37520,AT4G15056,AT4G15053,AT4G10210 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EE7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE7X Q8L5Z3 Q8L5Z3_ARATH AT4G26400 protein (RING/U-box superfamily protein) (Uncharacterized protein At4g26400) R-ATH-983168; 40206 AT4G26400 protein (RING/U-box superfamily protein) (Uncharacterized protein At4g26400) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to chitin [GO:0010200] locus:2131463; AT4G26400 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E3I1 DIR6 Q9SUQ8 DIR6_ARATH Dirigent protein 6 (AtDIR6) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. Enantiocomplementary dirigent protein that mediates the laccase-catalyzed enantioselective oxidative phenol coupling of (E)-coniferyl alcohol to (-)-pinoresinol. {ECO:0000269|PubMed:19946920, ECO:0000269|PubMed:22854967}. 21412 Dirigent protein 6 (AtDIR6) apoplast [GO:0048046]; guiding stereospecific synthesis activity [GO:0042349]; identical protein binding [GO:0042802]; isomerase activity [GO:0016853]; protein homodimerization activity [GO:0042803]; (-)-pinoresinol biosynthetic process [GO:1901599]; regulation of catalytic activity [GO:0050790] DEVELOPMENTAL STAGE: In flowers, expressed in the vasculature of petals, stamen filaments, anther microsporangia, and papillar cells of the stigma and style. In siliques, accumulates in the stigmatic region, replum, funiculus, and valve. {ECO:0000269|PubMed:22854967}. TISSUE SPECIFICITY: Expressed in roots, cotyledon veins, leaf trichomes, flowers, siliques, and meristems. Present in interfascicular/vascular cambia and developing xylem. {ECO:0000269|PubMed:22854967}. locus:2128469; AT4G23690 disease resistance-responsive family protein dirigent family NA NA NA NA NA NA NA ENOG411E3I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E3II NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E3IS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA fasciclin-like arabinogalactan protein Os08g0490600 protein Q0J4T9 Q0J4T9_ORYSJ Os08g0490600 Os08g0490600 OSNPB_080490600 ENOG411E3IU F4HXW0 F4HXW0_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 24322 Plant invertase/pectin methylesterase inhibitor superfamily protein enzyme inhibitor activity [GO:0004857] locus:2006842; AT1G14890 Invertase pectin methylesterase inhibitor family protein Os10g0185500 protein (Pectinesterase inhibitor domain containing protein),Os10g0185400 protein (Fragment) Q8SB05,A0A0P0XTD4 Q8SB05_ORYSJ,A0A0P0XTD4_ORYSJ Os10g0185500 LOC_Os10g10630 OSJNBa0029P16.5 OSNPB_100185500,Os10g0185400 OSNPB_100185400 ENOG411E3IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 55 (OsMADS55) Q69TG5 MAD55_ORYSJ MADS55 Os06g0217300 LOC_Os06g11330 OSJNBb0024N18.23 FUNCTION: Probable transcription factor. ENOG411DYB7 GAUT13,GAUT14 Q0WV13,Q8GWT1 GAUTD_ARATH,GAUTE_ARATH Probable galacturonosyltransferase 13 (EC 2.4.1.-),Probable galacturonosyltransferase 14 (EC 2.4.1.-) DISRUPTION PHENOTYPE: No obvious phenotype. Increased galacturonic acid and Gal content in cell wall, but reduced xylose and rhamnose content. {ECO:0000269|PubMed:19825675}. Abnormal xylan and pectin levels in cell walls-D. Mohnen-2009 FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 61144,60823 Probable galacturonosyltransferase 13 (EC 2.4.1.-),Probable galacturonosyltransferase 14 (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; pollen tube [GO:0090406]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall pectin biosynthetic process [GO:0052325]; pollen development [GO:0009555]; pollen tube growth [GO:0009860] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:2102082;,locus:2180947; AT3G01040,AT5G15470 Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-) Q2QN55 Q2QN55_ORYSJ LOC_Os12g38930 Os12g0578500 OsJ_36645 OSNPB_120578500 ENOG411DYB6 Q93ZN3 Q93ZN3_ARATH At4g17070/dl4565c (Peptidyl-prolyl cis-trans isomerase) 37669 At4g17070/dl4565c (Peptidyl-prolyl cis-trans isomerase) integral component of membrane [GO:0016021]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; response to oxidative stress [GO:0006979] locus:2130474; AT4G17070 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Expressed protein (Os03g0100300 protein) Q10T60 Q10T60_ORYSJ LOC_Os03g01090 Os03g0100300 OsJ_09048 OSNPB_030100300 ENOG411DYB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter G family member Os03g0282100 protein A0A0P0VWU6 A0A0P0VWU6_ORYSJ Os03g0282100 OSNPB_030282100 ENOG411DYB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os11g0169400 protein (Fragment),Os11g0496300 protein A0A0P0XZR9,A0A0P0Y2A6 A0A0P0XZR9_ORYSJ,A0A0P0Y2A6_ORYSJ Os11g0169400 OSNPB_110169400,Os11g0496300 OSNPB_110496300 ENOG411DYB3 EMB2656 F4K790 F4K790_ARATH ARM repeat superfamily protein Embryo defective; Preglobular / Globular-D. Meinke-2004 R-ATH-2514853; 116751 ARM repeat superfamily protein condensed chromosome [GO:0000793]; condensin complex [GO:0000796]; plasmodesma [GO:0009506]; mitotic chromosome condensation [GO:0007076] locus:2151764; AT5G37630 condensin complex subunit Os06g0256000 protein (Fragment) A0A0P0WVA8 A0A0P0WVA8_ORYSJ Os06g0256000 OSNPB_060256000 ENOG411DYB2 SH3P1 Q9C865 SH3P1_ARATH SH3 domain-containing protein 1 FUNCTION: Lipid binding protein bound strongly to phosphatidic acid, phosphatidylinositol-4-phosphate and phosphatidylinositol-4,5-bisphosphate. Binds actin in vitro. Involved in trafficking and modification of clathrin-coated vesicles. {ECO:0000269|PubMed:11701884}. 49258 SH3 domain-containing protein 1 clathrin-coated vesicle [GO:0030136]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Highly expressed in flowers. Detected in seedlings, roots, leaves and stems. {ECO:0000269|PubMed:11701884}. locus:2206174; AT1G31440 Variant SH3 domain Os03g0266700 protein (Variant SH3 domain containing protein, expressed) (cDNA clone:J023138M07, full insert sequence) Q10NK5 Q10NK5_ORYSJ Os03g0266700 LOC_Os03g16000 Os03g0266700 OsJ_10259 OSNPB_030266700 ENOG411DYB1 PAT06,PAT07,MEE6.13 Q9FLM3,Q0WQK2,A0A1P8BD91,A8MRY3 ZDH23_ARATH,ZDHC9_ARATH,A0A1P8BD91_ARATH,A8MRY3_ARATH Probable protein S-acyltransferase 6 (EC 2.3.1.225) (Probable palmitoyltransferase At5g41060) (Zinc finger DHHC domain-containing protein At5g41060),Probable protein S-acyltransferase 7 (EC 2.3.1.225) (Probable palmitoyltransferase At3g26935) (Zinc finger DHHC domain-containing protein At3g26935),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.4}.,FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.7}. 2.3.1.225; 2.3.1.225 46369,49916,38957,44653 Probable protein S-acyltransferase 6 (EC 2.3.1.225) (Probable palmitoyltransferase At5g41060) (Zinc finger DHHC domain-containing protein At5g41060),Probable protein S-acyltransferase 7 (EC 2.3.1.225) (Probable palmitoyltransferase At3g26935) (Zinc finger DHHC domain-containing protein At3g26935),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706],integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2163001;,locus:2091960; AT5G41060,AT3G26935 S-acyltransferase S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q0J0H9,Q5N959,Q0DHW0,Q6Z1H3,Q5JK16 Q0J0H9_ORYSJ,Q5N959_ORYSJ,Q0DHW0_ORYSJ,Q6Z1H3_ORYSJ,Q5JK16_ORYSJ Os09g0508300 Os09g0508300 OsJ_29957 OSNPB_090508300,Os01g0868200 Os01g0868200 OSNPB_010868200 P0677H08.18,Os05g0436900 Os05g0436900 OsJ_18669 OSNPB_050436900,Os08g0535400 Os08g0535400 OSJNBa0033D24.20 OSNPB_080535400 P0665C04.1,Os01g0925300 Os01g0925300 B1033B05.27 OSJNBa0093F16.1 OSNPB_010925300 ENOG411DYB0 CNGC6,CNGC5,CNGC9 O82226,Q8RWS9,Q9M0A4,A0A1P8AYC4,F4JQC2,A0A1P8AYI8 CNGC6_ARATH,CNGC5_ARATH,CNGC9_ARATH,A0A1P8AYC4_ARATH,F4JQC2_ARATH,A0A1P8AYI8_ARATH Probable cyclic nucleotide-gated ion channel 6 (AtCNGC6) (Cyclic nucleotide- and calmodulin-regulated ion channel 6),Probable cyclic nucleotide-gated ion channel 5 (AtCNGC5) (Cyclic nucleotide- and calmodulin-regulated ion channel 5),Putative cyclic nucleotide-gated ion channel 9 (Cyclic nucleotide- and calmodulin-regulated ion channel 9),Cyclic nucleotide-gated channel 6,Cyclic nucleotide gated channel 9 FUNCTION: Probable cyclic nucleotide-gated ion channel.,FUNCTION: Putative cyclic nucleotide-gated ion channel. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 85441,81969,83624,88150,80733,82459 Probable cyclic nucleotide-gated ion channel 6 (AtCNGC6) (Cyclic nucleotide- and calmodulin-regulated ion channel 6),Probable cyclic nucleotide-gated ion channel 5 (AtCNGC5) (Cyclic nucleotide- and calmodulin-regulated ion channel 5),Putative cyclic nucleotide-gated ion channel 9 (Cyclic nucleotide- and calmodulin-regulated ion channel 9),Cyclic nucleotide-gated channel 6,Cyclic nucleotide gated channel 9 cell periphery [GO:0071944]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; intracellular cGMP activated cation channel activity [GO:0005223]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391]; response to cadmium ion [GO:0046686],integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; intracellular cGMP activated cation channel activity [GO:0005223]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391],integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216],integral component of membrane [GO:0016021]; voltage-gated potassium channel activity [GO:0005249] locus:2061401;,locus:2174448;,locus:2118836; AT2G23980,AT5G57940,AT4G30560 cyclic nucleotide-gated ion channel Os04g0643600 protein (Fragment) Q0J9M1 Q0J9M1_ORYSJ Os04g0643600 Os04g0643600 OSNPB_040643600 ENOG411DYB8 psaA P56766 PSAA_ARATH Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) FUNCTION: PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. MetaCyc:MONOMER-1099; 1.97.1.12 83231 Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; 4 iron, 4 sulfur cluster binding [GO:0051539]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; photosynthesis [GO:0015979]; protein-chromophore linkage [GO:0018298] locus:504954659; ATCG00350 PsaA and PsaB bind P700 the primary electron donor of photosystem I (PSI) as well as the electron acceptors A0 A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase converting photonic excitation into a charge separation which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0 A1 FX FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) P0C355 PSAA_ORYSJ psaA LOC_Osp1g00340 Nip050 FUNCTION: PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. ENOG411DYBG NFYC2 Q8LCG7 NFYC2_ARATH Nuclear transcription factor Y subunit C-2 (AtNF-YC-2) (Transcriptional activator HAP5B) FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 23124 Nuclear transcription factor Y subunit C-2 (AtNF-YC-2) (Transcriptional activator HAP5B) CCAAT-binding factor complex [GO:0016602]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. locus:2011776; AT1G56170 Nuclear transcription factor Y subunit HAP5 subunit of HAP complex (Nuclear transcription factor Y subunit gamma) (Os02g0170500 protein) (Putative heme activated protein) (cDNA, clone: J100067L16, full insert sequence),Os08g0206500 protein Q6H707,A0A0N7KPF9 Q6H707_ORYSJ,A0A0N7KPF9_ORYSJ Os02g0170500 OsHAP5A Os02g0170500 OJ1116_A06.31 OsJ_05556 OSNPB_020170500 P0030G02.21,Os08g0206500 OSNPB_080206500 ENOG411DYBF AQI Q8S9L3,F4JTK8 Q8S9L3_ARATH,F4JTK8_ARATH AT4g38220/F20D10_340 (Peptidase M20/M25/M40 family protein),Peptidase M20/M25/M40 family protein R-ATH-5423646; 47739,48038 AT4g38220/F20D10_340 (Peptidase M20/M25/M40 family protein),Peptidase M20/M25/M40 family protein cytoplasm [GO:0005737]; aminoacylase activity [GO:0004046]; metallopeptidase activity [GO:0008237]; cellular amino acid metabolic process [GO:0006520],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; vacuole [GO:0005773]; aminoacylase activity [GO:0004046]; metallopeptidase activity [GO:0008237]; cellular amino acid metabolic process [GO:0006520]; response to zinc ion [GO:0010043] locus:2120958; AT4G38220 Peptidase family M20/M25/M40 Os08g0511900 protein A0A0P0XI05 A0A0P0XI05_ORYSJ Os08g0511900 OSNPB_080511900 ENOG411DYBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DYBD SYP112 Q9ZPV9 SY112_ARATH Syntaxin-112 (AtSYP112) FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-449836; SNARE interactions in vesicular transport (04130),Synaptic vesicle cycle (04721),Pantothenate and CoA biosynthesis (00770),Metabolic pathways (01100) 35043 Syntaxin-112 (AtSYP112) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; response to cold [GO:0009409]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] locus:2062151; AT2G18260 syntaxin NA NA NA NA NA NA NA ENOG411DYBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox NA NA NA NA NA NA NA ENOG411DYBB PHO1-H10 Q6R8G0 PHO1A_ARATH Phosphate transporter PHO1 homolog 10 (Protein PHO1 homolog 10) (AtPHO1;H10) FUNCTION: May transport inorganic phosphate (Pi). {ECO:0000250}. 90598 Phosphate transporter PHO1 homolog 10 (Protein PHO1 homolog 10) (AtPHO1;H10) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; phosphate ion transport [GO:0006817] TISSUE SPECIFICITY: Expressed in root epidermis and cortex, leaf blades and hydathodes, stems and flowers. {ECO:0000269|PubMed:15122012, ECO:0000269|PubMed:18434606}. locus:2007156; AT1G69480 phosphate transporter PHO1 homolog NA NA NA NA NA NA NA ENOG411DYBA ING1 Q9LIQ6 ING1_ARATH PHD finger protein ING1 (Protein INHIBITOR OF GROWTH 1) (Protein AtING1) FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. R-ATH-3214847;R-ATH-6811555; 26098 PHD finger protein ING1 (Protein INHIBITOR OF GROWTH 1) (Protein AtING1) nucleus [GO:0005634]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; covalent chromatin modification [GO:0016569]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19154204}. locus:2076141; AT3G24010 inhibitor of growth protein PHD finger protein ING Q84J54 Q84J54_ORYSJ Os03g0143600 LOC_Os03g04980 Os03g0143600 OsJ_09369 OSNPB_030143600 ENOG411DYBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root cap OSJNBa0073L04.2 protein (Os04g0410400 protein) Q7XVG2 Q7XVG2_ORYSJ Os04g0410400 OSJNBa0073L04.2 OSNPB_040410400 ENOG411DYBM Q8RY18,Q9FHC7,F4I476,A0A1P8ARC9,A0A1P8AR94,F4JKZ7,F4KG56,A8MQL1,A8MR11,F4I479 Y5436_ARATH,Q9FHC7_ARATH,F4I476_ARATH,A0A1P8ARC9_ARATH,A0A1P8AR94_ARATH,F4JKZ7_ARATH,F4KG56_ARATH,A8MQL1_ARATH,A8MR11_ARATH,F4I479_ARATH MATH domain-containing protein At5g43560,At5g52330 (Similarity to unknown protein) (TRAF-like superfamily protein),TRAF-like superfamily protein FUNCTION: Functions redundantly with TRAF1B in the regulation of plant immune response. Contributes to the turnover of the nucleotide-binding domain and leucine-rich repeat-containing (NB-LRR) immune receptors SNC1 and RPS2. May associate with an E3 ubiquitin-protein ligase complex, which modulates ubiquitination and subsequent degradation of NB-LRR immune sensors to maintain their homeostasis (PubMed:26867179). Functions redundantly with TRAF1B in the regulation of autophagosome formation. Required for SINAT1- and SINAT2-mediated ubiquitination and destabilization of ATG6. Functions as molecular adapter that helps to regulate autophagy by modulating ATG6 stability (PubMed:28351989). {ECO:0000269|PubMed:26867179, ECO:0000269|PubMed:28351989}.,FUNCTION: Functions redundantly with TRAF1A in the regulation of plant immune response. Contributes to the turnover of the nucleotide-binding domain and leucine-rich repeat-containing (NB-LRR) immune receptors SNC1 and RPS2. May associate with an E3 ubiquitin-protein ligase complex, which modulates ubiquitination and subsequent degradation of NB-LRR immune sensors to maintain their homeostasis (PubMed:26867179). Functions redundantly with TRAF1A in the regulation of autophagosome formation. Required for SINAT1- and SINAT2-mediated ubiquitination and destabilization of ATG6. Functions as molecular adapter that helps to regulate autophagy by modulating ATG6 stability (PubMed:28351989). {ECO:0000269|PubMed:26867179, ECO:0000269|PubMed:28351989}. 117449,46774,117430,116353,90042,44312,40862,120444,119655,111018 MATH domain-containing protein At5g43560,At5g52330 (Similarity to unknown protein) (TRAF-like superfamily protein),TRAF-like superfamily protein protein histidine kinase binding [GO:0043424],integral component of membrane [GO:0016021] locus:2158387;,locus:2156692;,locus:504955448;,locus:2018279; AT5G43560,AT5G52330,AT1G04300,AT4G16045 MATH domain-containing protein Os12g0597200 protein (Fragment) A0A0N7KUB2 A0A0N7KUB2_ORYSJ Os12g0597200 OSNPB_120597200 ENOG411DYBK P0CE10,F4KGU4 DEAHB_ARATH,DEAHC_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic (EC 3.6.4.13),ATP-dependent RNA helicase DEAH12, chloroplastic (EC 3.6.4.13) 3.6.4.13 202131,201362 ATP-dependent RNA helicase DEAH11, chloroplastic (EC 3.6.4.13),ATP-dependent RNA helicase DEAH12, chloroplastic (EC 3.6.4.13) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2125211;,locus:2142459; AT4G01020,AT5G10370 protein At4g01020 chloroplastic-like RBR-type E3 ubiquitin transferase (EC 2.3.2.31) (Fragment) A0A0P0X951 A0A0P0X951_ORYSJ Os07g0621500 OSNPB_070621500 ENOG411DYBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polycystin cation channel NA NA NA NA NA NA NA ENOG411DYBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DYBH PP2B10,PP2B8,PP2B1,PP2B7,SKIP3 Q3E6P4,Q9ZVQ6,Q9ZVQ8,Q6NPT8,Q9ZVQ9,Q9FV02 FB95_ARATH,P2B10_ARATH,PP2B8_ARATH,PP2B1_ARATH,PP2B7_ARATH,SKIP3_ARATH F-box protein At2g02240,F-box protein PP2-B10 (Protein PHLOEM PROTEIN 2-LIKE B10) (AtPP2-B10),Putative F-box protein PP2-B8 (Protein PHLOEM PROTEIN 2-LIKE B8) (AtPP2-B8),F-box protein PP2-B1 (Protein PHLOEM PROTEIN 2-LIKE B1) (AtPP2-B1) (SKP1-interacting partner 21),F-box protein PP2-B7 (Protein PHLOEM PROTEIN 2-LIKE B7) (AtPP2-B7),F-box protein SKIP3 (F-box protein PP2-B9) (Protein PHLOEM PROTEIN 2-LIKE B9) (SKP1-interacting partner 3) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 36718,31294,35239,37130,35685,33354 F-box protein At2g02240,F-box protein PP2-B10 (Protein PHLOEM PROTEIN 2-LIKE B10) (AtPP2-B10),Putative F-box protein PP2-B8 (Protein PHLOEM PROTEIN 2-LIKE B8) (AtPP2-B8),F-box protein PP2-B1 (Protein PHLOEM PROTEIN 2-LIKE B1) (AtPP2-B1) (SKP1-interacting partner 21),F-box protein PP2-B7 (Protein PHLOEM PROTEIN 2-LIKE B7) (AtPP2-B7),F-box protein SKIP3 (F-box protein PP2-B9) (Protein PHLOEM PROTEIN 2-LIKE B9) (SKP1-interacting partner 3) embryo development ending in seed dormancy [GO:0009793],carbohydrate binding [GO:0030246]; protein ubiquitination [GO:0016567],carbohydrate binding [GO:0030246],nucleus [GO:0005634]; carbohydrate binding [GO:0030246]; protein ubiquitination [GO:0016567],protein ubiquitination [GO:0016567] locus:2056181;,locus:2056231;,locus:2056201;,locus:2056191;,locus:2056176; AT2G02240,AT2G02360,AT2G02340,AT2G02230,AT2G02320,AT2G02350 F-box protein NA NA NA NA NA NA NA ENOG411DYBW APO3 Q9FH50 APO3_ARATH APO protein 3, mitochondrial FUNCTION: May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria. {ECO:0000305}. 45912 APO protein 3, mitochondrial mitochondrion [GO:0005739]; RNA binding [GO:0003723] locus:2156151; AT5G61930 APO protein 3 Os07g0600300 protein Q0D4W3 Q0D4W3_ORYSJ Os07g0600300 Os07g0600300 OSNPB_070600300 ENOG411DYBV ARPC3 Q1ECJ7,A0A1P8AS90 ARPC3_ARATH,A0A1P8AS90_ARATH Actin-related protein 2/3 complex subunit 3 (Actin-related protein C3) (Arp2/3 complex 21 kDa subunit) (p21-ARC),Actin-related protein C3 FUNCTION: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. {ECO:0000250}. R-ATH-2029482;R-ATH-5663213; 19491,15036 Actin-related protein 2/3 complex subunit 3 (Actin-related protein C3) (Arp2/3 complex 21 kDa subunit) (p21-ARC),Actin-related protein C3 Arp2/3 protein complex [GO:0005885]; cell projection [GO:0042995]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament organization [GO:0007015]; Arp2/3 complex-mediated actin nucleation [GO:0034314],Arp2/3 protein complex [GO:0005885]; Arp2/3 complex-mediated actin nucleation [GO:0034314] TISSUE SPECIFICITY: Expressed at low levels in all tissues with a relatively highest expression in inflorescences. {ECO:0000269|PubMed:12913159}. locus:2195633; AT1G60430 Actin-related protein 2 3 complex subunit Os02g0235000 protein (Fragment) A0A0P0VGW8 A0A0P0VGW8_ORYSJ Os02g0235000 OSNPB_020235000 ENOG411DYBU MFDX1,MFDX2 Q9M0V0,Q8S904 MFDX1_ARATH,MFDX2_ARATH Adrenodoxin-like protein 1, mitochondrial (Mitochondrial ferredoxin 1) (AtMFDX1),Adrenodoxin-like protein 2, mitochondrial (Mitochondrial ferredoxin 2) (AtMFDX2) Male and female gametophyte defective; Rare embryo defective (inferred)-S. McCormick-2009 FUNCTION: Associates in vitro with the adrenodoxin reductase MFDR to form an efficient low potential electron transfer chain that is able to reduce cytochrome C (PubMed:12714594, PubMed:13677469). Functions as accessory mitochondrial protein involved with BIO2 in the plant biotin synthase reaction (PubMed:12714594). {ECO:0000269|PubMed:12714594, ECO:0000269|PubMed:13677469}.,FUNCTION: Associates with the adrenodoxin reductase MFDR to form an efficient low potential electron transfer chain that is able to reduce cytochrome C. {ECO:0000250|UniProtKB:Q9M0V0}. ARA:AT4G05450-MONOMER;,ARA:GQT-358-MONOMER; R-ATH-1362409;R-ATH-2395516; 2.8.1.6; 21831,22121 Adrenodoxin-like protein 1, mitochondrial (Mitochondrial ferredoxin 1) (AtMFDX1),Adrenodoxin-like protein 2, mitochondrial (Mitochondrial ferredoxin 2) (AtMFDX2) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; biotin biosynthetic process [GO:0009102]; electron transport chain [GO:0022900]; pollen tube development [GO:0048868],mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2115939;,locus:2127358; AT4G05450,AT4G21090 2Fe-2S ferredoxin-like Os07g0110300 protein (Putative ferredoxin) (cDNA clone:J033003P09, full insert sequence),Os09g0437900 protein (Putative ferredoxin) Q7XIU2,Q69LJ8 Q7XIU2_ORYSJ,Q69LJ8_ORYSJ OJ1567_G09.131-1 Os07g0110300 OsJ_22833 OSNPB_070110300,Os09g0437900 Os09g0437900 OJ1328_D07.22 OsJ_29503 OSNPB_090437900 P0556H01.5 ENOG411DYBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NAC transcription factor 15 (Os07g0684800 protein) (Putative GRAB2 protein(Geminivirus Rep A-binding)) (cDNA clone:001-200-F06, full insert sequence) (cDNA clone:J033072L16, full insert sequence) Q6Z4N0 Q6Z4N0_ORYSJ NAC15 Os07g0684800 OSJNBa0060O17.23 OSNPB_070684800 ENOG411DYBS Q8L7W3,A0A1P8AZU5 Q8L7W3_ARATH,A0A1P8AZU5_ARATH At2g29210/F16P2.41 (Splicing factor PWI domain-containing protein),Splicing factor PWI domain-containing protein R-ATH-72163; 100479,98506 At2g29210/F16P2.41 (Splicing factor PWI domain-containing protein),Splicing factor PWI domain-containing protein mRNA processing [GO:0006397]; RNA splicing [GO:0008380],mRNA processing [GO:0006397] locus:2043172; AT2G29210 PWI domain Os03g0270200 protein,Os03g0270200 protein (Retrotransposon protein, putative, unclassified, expressed) Q0DT40,Q10NF9,A0A0N7KH04 Q0DT40_ORYSJ,Q10NF9_ORYSJ,A0A0N7KH04_ORYSJ Os03g0270200 OSNPB_030270200,Os03g0270200 LOC_Os03g16369 OSNPB_030270200 ENOG411DYBR O64560 O64560_ARATH At2g19270 (Mitotic checkpoint protein PRCC-carboxy-term protein) (Uncharacterized protein At2g19270) 39016 At2g19270 (Mitotic checkpoint protein PRCC-carboxy-term protein) (Uncharacterized protein At2g19270) locus:2047645; AT2G19270 Pfam:PRCC_Cterm Os02g0175900 protein (cDNA clone:001-125-F09, full insert sequence) (cDNA clone:J033069A04, full insert sequence) Q6EUQ4 Q6EUQ4_ORYSJ Os02g0175900 OJ1077_E05.16 OsJ_05588 OSNPB_020175900 ENOG411DYBQ A0A1P8ATL5,F4IBH8 A0A1P8ATL5_ARATH,F4IBH8_ARATH Zinc-binding dehydrogenase family protein 30141,38631 Zinc-binding dehydrogenase family protein oxidation-reduction process [GO:0055114] locus:2034109; AT1G65560 Zinc-binding dehydrogenase Os01g0891300 protein (Putative allyl alcohol dehydrogenase) (cDNA clone:001-119-D10, full insert sequence) (cDNA clone:J023064D04, full insert sequence) Q8S0M7 Q8S0M7_ORYSJ Os01g0891300 Os01g0891300 B1078G07.5 OSNPB_010891300 ENOG411DYBY MBK5.9 Q93ZM6,A0A1P8BEP1,F4KAS6 Q93ZM6_ARATH,A0A1P8BEP1_ARATH,F4KAS6_ARATH At5g63620/MBK5_9 (GroES-like zinc-binding alcohol dehydrogenase family protein),GroES-like zinc-binding alcohol dehydrogenase family protein ARA:AT5G63620-MONOMER; 45497,34513,45541 At5g63620/MBK5_9 (GroES-like zinc-binding alcohol dehydrogenase family protein),GroES-like zinc-binding alcohol dehydrogenase family protein cobalt ion binding [GO:0050897]; oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270],oxidation-reduction process [GO:0055114],oxidoreductase activity [GO:0016491] locus:2160624; AT5G63620 Dehydrogenase Os08g0109200 protein (Fragment) A0A0P0XBM6 A0A0P0XBM6_ORYSJ Os08g0109200 OSNPB_080109200 ENOG411DYBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: MORC family CW-type zinc finger Os11g0454800 protein A0A0P0Y225 A0A0P0Y225_ORYSJ Os11g0454800 OSNPB_110454800 ENOG411ECI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411ECI8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411ECI0 KNAT5 P48002,A0A1P8B599 KNAT5_ARATH,A0A1P8B599_ARATH Homeobox protein knotted-1-like 5 (Homeodomain-containing protein 1) (Protein KNAT5),Homeobox protein knotted-1-like 5 No visible root phenotype. 43284,42910 Homeobox protein knotted-1-like 5 (Homeodomain-containing protein 1) (Protein KNAT5),Homeobox protein knotted-1-like 5 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to ethylene stimulus [GO:0071369]; detection of ethylene stimulus [GO:0009727],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:2116632; AT4G32040 ELK domain NA NA NA NA NA NA NA ENOG411ECI7 MAP1B,MAP1C Q9FV52,Q9FV51,A0A178VHY7 MAP1B_ARATH,MAP1C_ARATH,A0A178VHY7_ARATH Methionine aminopeptidase 1B, chloroplastic (MAP 1B) (MetAP 1B) (EC 3.4.11.18) (Peptidase M 1B),Methionine aminopeptidase 1C, chloroplastic/mitochondrial (MAP 1C) (MetAP 1C) (EC 3.4.11.18) (Peptidase M 1C),Methionine aminopeptidase 1C FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000255|HAMAP-Rule:MF_03174}. 3.4.11.18 40424,37679,28842 Methionine aminopeptidase 1B, chloroplastic (MAP 1B) (MetAP 1B) (EC 3.4.11.18) (Peptidase M 1B),Methionine aminopeptidase 1C, chloroplastic/mitochondrial (MAP 1C) (MetAP 1C) (EC 3.4.11.18) (Peptidase M 1C),Methionine aminopeptidase 1C chloroplast [GO:0009507]; mitochondrion [GO:0005739]; aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloexopeptidase activity [GO:0008235]; N-terminal protein amino acid modification [GO:0031365],aminopeptidase activity [GO:0004177] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in green tissues. {ECO:0000269|PubMed:11060042}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11060042}. locus:2205329;,locus:2085979; AT1G13270,AT3G25740 Removes the N-terminal methionine from nascent proteins (By similarity) NA NA NA NA NA NA NA ENOG411ECI6 Q9CAP2 Q9CAP2_ARATH Histone H3 K4-specific methyltransferase SET7/9 family protein (Uncharacterized protein At1g77660) (Uncharacterized protein T5M16.25) ARA:GQT-1403-MONOMER; 47732 Histone H3 K4-specific methyltransferase SET7/9 family protein (Uncharacterized protein At1g77660) (Uncharacterized protein T5M16.25) integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2204770; AT1G77660 MORN NA NA NA NA NA NA NA ENOG411ECI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Adenylate kinase active site lid Adenylate kinase 4 (EC 2.7.4.3) (ATP-AMP transphosphorylase 4) (ATP:AMP phosphotransferase) (Adenylate kinase B) (AK B) (Adenylate monophosphate kinase 4),Adenylate kinase 3 (EC 2.7.4.3) (ATP-AMP transphosphorylase 3) (ATP:AMP phosphotransferase) (Adenylate kinase A) (AK A) (Adenylate monophosphate kinase 3) Q08480,Q08479 KAD4_ORYSJ,KAD3_ORYSJ ADK-B Os11g0312400 LOC_Os11g20790; Os11g0312220,ADK-A Os12g0236400 LOC_Os12g13380 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ENOG411ECI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411ECIS NUDT11 Q8LET2,A0A1P8BDC5 NUD11_ARATH,A0A1P8BDC5_ARATH Nudix hydrolase 11 (AtNUDT11) (EC 3.6.1.-) (Coenzyme A diphosphatase NUDT11),Nudix hydrolase homolog 11 FUNCTION: Coenzyme A diphosphatase which mediates the cleavage of CoA into 3',5'-ADP from CoA and 4'-phosphopantetheine. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA. {ECO:0000269|PubMed:15878881}. ARA:AT5G45940-MONOMER; R-ATH-390918; 3.6.1.- 25679,19148 Nudix hydrolase 11 (AtNUDT11) (EC 3.6.1.-) (Coenzyme A diphosphatase NUDT11),Nudix hydrolase homolog 11 cytosol [GO:0005829]; integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; CoA pyrophosphatase activity [GO:0010945]; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [GO:0008893]; metal ion binding [GO:0046872]; NAD+ diphosphatase activity [GO:0000210]; coenzyme A biosynthetic process [GO:0015937]; malonyl-CoA catabolic process [GO:2001294]; multicellular organism development [GO:0007275]; nucleoside phosphate metabolic process [GO:0006753],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:15878881}. locus:2152415; AT5G45940 Arabidopsis thaliana Nudix hydrolase homolog 11 NA NA NA NA NA NA NA ENOG411ECIP IAA2,IAA1 P49678,P49677,A0A1I9LQ54 IAA2_ARATH,IAA1_ARATH,A0A1I9LQ54_ARATH Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2),Auxin-responsive protein IAA1 (Indoleacetic acid-induced protein 1),Auxin-responsive protein FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 19910,19032,29676 Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2),Auxin-responsive protein IAA1 (Indoleacetic acid-induced protein 1),Auxin-responsive protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; identical protein binding [GO:0042802]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Preferentially expressed in vegetative organs. {ECO:0000269|PubMed:7658471}.,TISSUE SPECIFICITY: Preferentially expressed in stems, leaves and flowers. {ECO:0000269|PubMed:7658471}. locus:2094578;,locus:2129910; AT3G23030,AT4G14560 indole-3-acetic acid inducible 2 NA NA NA NA NA NA NA ENOG411ECIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF607 NA NA NA NA NA NA NA ENOG411ECIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECIT Q1PE31 Q1PE31_ARATH Uncharacterized protein 42165 Uncharacterized protein locus:2126674; AT4G30830 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411ECIK HDG10,HDG9 Q9S9Z0,Q9FFI0 HDG10_ARATH,HDG9_ARATH Homeobox-leucine zipper protein HDG10 (HD-ZIP protein HDG10) (Homeodomain GLABRA 2-like protein 10) (Homeodomain transcription factor HDG10) (Protein HOMEODOMAIN GLABROUS 10),Homeobox-leucine zipper protein HDG9 (HD-ZIP protein HDG9) (Homeodomain GLABRA 2-like protein 9) (Homeodomain transcription factor HDG9) (Protein HOMEODOMAIN GLABROUS 9) No visible phenotype. FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. 80058,81068 Homeobox-leucine zipper protein HDG10 (HD-ZIP protein HDG10) (Homeodomain GLABRA 2-like protein 10) (Homeodomain transcription factor HDG10) (Protein HOMEODOMAIN GLABROUS 10),Homeobox-leucine zipper protein HDG9 (HD-ZIP protein HDG9) (Homeodomain GLABRA 2-like protein 9) (Homeodomain transcription factor HDG9) (Protein HOMEODOMAIN GLABROUS 9) nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in exclusively in anthers with highest levels in the tapetum and pollen grains. {ECO:0000269|PubMed:16778018}.,TISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}. locus:2023932;,locus:2167230; AT1G34650,AT5G17320 homeodomain glabrous NA NA NA NA NA NA NA ENOG411ECII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0536800 protein,Os12g0639150 protein (Fragment),Os12g0637500 protein (Fragment) Q69JG3,A0A0P0YCK5,A0A0P0YCH2 Q69JG3_ORYSJ,A0A0P0YCK5_ORYSJ,A0A0P0YCH2_ORYSJ Os09g0536800 OSNPB_090536800 P0229B10.2 P0569E11.24,Os12g0639150 OSNPB_120639150,Os12g0637500 OSNPB_120637500 ENOG411ECIN ATEXO70G2 Q9C8H6 Q9C8H6_ARATH Exocyst subunit exo70 family protein G2 (Uncharacterized protein F19C24.13) R-ATH-5620916; 76195 Exocyst subunit exo70 family protein G2 (Uncharacterized protein F19C24.13) exocyst [GO:0000145]; pollen tube [GO:0090406]; exocytosis [GO:0006887] locus:2017642; AT1G51640 exocyst subunit exo70 family protein G2 NA NA NA NA NA NA NA ENOG411ECIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411ECIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein kinase Os07g0302100 protein (Fragment) A0A0P0X5S1 A0A0P0X5S1_ORYSJ Os07g0302100 OSNPB_070302100 ENOG411ECID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-galactopyranose mutase NA NA NA NA NA NA NA ENOG411ECJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR NA NA NA NA NA NA NA ENOG411ECJB Q9SAB5,Q9C6U5 FBLK2_ARATH,Q9C6U5_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620,F-box associated ubiquitination effector family protein (Uncharacterized protein F27M3_26) 41553,35081 Putative F-box/LRR-repeat/kelch-repeat protein At1g11620,F-box associated ubiquitination effector family protein (Uncharacterized protein F27M3_26) ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2027397;,locus:2028706; AT1G11620,AT1G31510 F-box associated NA NA NA NA NA NA NA ENOG411ECJC CYP71B4,CYP71B25 O65786,Q9LTL2,A0A1I9LMQ2 C71B4_ARATH,C71BP_ARATH,A0A1I9LMQ2_ARATH Cytochrome P450 71B4 (EC 1.14.-.-),Cytochrome P450 71B25 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 4 ARA:AT3G26280-MONOMER;,ARA:AT3G26270-MONOMER; 1.14.-.- 57789,57535,59786 Cytochrome P450 71B4 (EC 1.14.-.-),Cytochrome P450 71B25 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 4 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2093536;,locus:2093526; AT3G26280,AT3G26270 monooxygenase activity NA NA NA NA NA NA NA ENOG411ECJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411ECJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DWX9 HCF101 Q6STH5 HF101_ARATH Fe-S cluster assembly factor HCF101, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 101) DISRUPTION PHENOTYPE: Seedling lethality when homozygous due to impaired photosystem I (PSI). {ECO:0000269|PubMed:14645254, ECO:0000269|PubMed:14690502}. FUNCTION: Required for photosystem I (PSI) biosynthesis and assembly. May serve as a chloroplast scaffold protein that specifically assembles iron-sulfur (4Fe-4S) clusters and transfers them to the chloroplast PSI and ferredoxin-thioredoxin (FTR) complexes. Can assemble a 4Fe-4S cluster and transfer it to apoproteins in yeast cells. Probably not required for assembly or stability of plastidic 2Fe-2S clusters. {ECO:0000269|PubMed:14645254, ECO:0000269|PubMed:14690502, ECO:0000269|PubMed:19817716}. 57764 Fe-S cluster assembly factor HCF101, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 101) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; iron-sulfur cluster assembly [GO:0016226] TISSUE SPECIFICITY: Expressed in aerial tissues exposed to light. Very low expression in roots. {ECO:0000269|PubMed:14645254, ECO:0000269|PubMed:14690502}. locus:2087148; AT3G24430 Protein mrp homolog Fe-S cluster assembly factor HCF101, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 101 homolog),Os01g0719700 protein (Fragment) Q0JJS8,A0A0P0V7H1 HF101_ORYSJ,A0A0P0V7H1_ORYSJ HCF101 Os01g0719700 LOC_Os01g52170 OsJ_03276 P0480C01.27,Os01g0719700 OSNPB_010719700 FUNCTION: Required for photosystem I (PSI) biosynthesis and assembly. May serve as a chloroplast scaffold protein that specifically assembles iron-sulfur (4Fe-4S) clusters and transfers them to the chloroplast PSI and ferredoxin-thioredoxin (FTR) complexes. Probably not required for assembly or stability of plastidic 2Fe-2S clusters (By similarity). {ECO:0000250}. ENOG411DWX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caspase domain Os03g0389000 protein A0A0P0VY92 A0A0P0VY92_ORYSJ Os03g0389000 OSNPB_030389000 ENOG411DWX7 SDH Q9FJ95 DHSO_ARATH Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol 2-dehydrogenase) DISRUPTION PHENOTYPE: Reduced dry weight and primary root length when grown in the presence of sorbitol. Increased resistance to dehydration under short-day conditions. {ECO:0000269|Ref.9}. FUNCTION: Converts sorbitol to fructose. Mostly active with sorbitol, ribitol and xylitol as substrates. {ECO:0000269|Ref.7}. ARA:AT5G51970-MONOMER; R-ATH-5652227;R-ATH-5661270; 1.1.1.14 39256 Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol 2-dehydrogenase) cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrial membrane [GO:0031966]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; L-iditol 2-dehydrogenase activity [GO:0003939]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Mostly expressed in dry seeds and leaves, and, to a lower extent, in roots, stems, flowers and siliques (at protein level). {ECO:0000269|Ref.9}. locus:2173093; AT5G51970 Alcohol dehydrogenase GroES-like domain Os08g0545200 protein (Putative sorbitol dehydrogenase) (cDNA clone:001-124-E11, full insert sequence) (cDNA clone:J033046H09, full insert sequence) Q6ZBH2 Q6ZBH2_ORYSJ Os08g0545200 OJ1323_A06.4 OsJ_28161 OSNPB_080545200 P0623F08.37 ENOG411DWX6 Q9SXB7 Q9SXB7_ARATH GDSL esterase/lipase (T28P6.3 protein) (Uncharacterized protein At1g11320) 46891 GDSL esterase/lipase (T28P6.3 protein) (Uncharacterized protein At1g11320) mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2202134; AT1G11320 NA Os06g0724200 protein (Fragment) Q0D9E9 Q0D9E9_ORYSJ Os06g0724200 Os06g0724200 OSNPB_060724200 ENOG411DWX5 rpoC2 P56764 RPOC2_ARATH DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000255|HAMAP-Rule:MF_01324}. Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 2.7.7.6 156366 DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; DNA-directed RNA polymerase complex [GO:0000428]; nucleoid [GO:0009295]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] locus:504954641; ATCG00170 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') P0C509 RPOC2_ORYSJ rpoC2 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000255|HAMAP-Rule:MF_01324}. ENOG411DWX4 RD21A,GCP1,RD21B P43297,Q94B08,Q9FMH8 RD21A_ARATH,RDL1_ARATH,RD21B_ARATH Cysteine proteinase RD21A (EC 3.4.22.-) (Protein RESPONSIVE TO DEHYDRATION 21) (RD21),Germination-specific cysteine protease 1 (EC 3.4.22.-) (RD21A-like protease 1),Probable cysteine protease RD21B (EC 3.4.22.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:22238602, PubMed:22396764). Mutant plants show increased susceptibility to infection by the necrotrophic fungal pathogen Botrytis cinerea (PubMed:22238602). {ECO:0000269|PubMed:22238602, ECO:0000269|PubMed:22396764}. FUNCTION: Cysteine protease that plays a role in immunity, senescence, and biotic and abiotic stresses (Probable). Involved in immunity against the necrotrophic fungal pathogen Botrytis cinerea (PubMed:22238602). Involved in elicitor-stimulated programmed cell death (PCD). During infection by the necrotrophic fungal pathogen Botrytis cinerea, functions as PCD-promoting protease that is released from the ER body or vacuole to the cytoplasm (PubMed:23398119). Accumulates in endoplasmic reticulum-derived bodies in epidermal cells and may participate in cell death in stressed or injured cells (PubMed:11577182). Involved in water stress-induced cell death through its protease activity that is released to the cytoplasm after vacuolar collapse (PubMed:26884487). Possesses protease activity in vitro and is involved in cell death in the transmitting tract and septum epidermis during flower development (PubMed:26160583). Possesses peptide ligase activity. Can ligate peptides to unmodified N-termini of acceptor proteins. Probably ligates through a thioester intermediate (PubMed:18660805). {ECO:0000269|PubMed:11577182, ECO:0000269|PubMed:18660805, ECO:0000269|PubMed:22238602, ECO:0000269|PubMed:23398119, ECO:0000269|PubMed:26160583, ECO:0000269|PubMed:26884487, ECO:0000305|PubMed:22396764}.,FUNCTION: Probable thiol protease. {ECO:0000250|UniProtKB:P43297}. 3.4.22.- 50966,41640,51204 Cysteine proteinase RD21A (EC 3.4.22.-) (Protein RESPONSIVE TO DEHYDRATION 21) (RD21),Germination-specific cysteine protease 1 (EC 3.4.22.-) (RD21A-like protease 1),Probable cysteine protease RD21B (EC 3.4.22.-) apoplast [GO:0048046]; chloroplast [GO:0009507]; cytoplasmic stress granule [GO:0010494]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; lysosome [GO:0005764]; P-body [GO:0000932]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; cysteine-type endopeptidase activity [GO:0004197]; cysteine-type peptidase activity [GO:0008234]; peptidase activity [GO:0008233]; defense response to fungus [GO:0050832]; proteolysis [GO:0006508]; proteolysis involved in cellular protein catabolic process [GO:0051603],extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; extracellular space [GO:0005615]; lysosome [GO:0005764]; vacuole [GO:0005773]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Germination specific. {ECO:0000305|Ref.1}. locus:2825832;,locus:2167821; AT1G47128,AT4G36880,AT5G43060 cysteine Oryzain alpha chain (EC 3.4.22.-),Oryzain beta chain (EC 3.4.22.-),Cysteine protease 1 (EC 3.4.22.-) (OsCP1),Os04g0650000 protein,Os04g0650000 protein (Fragment),Os04g0670200 protein (Fragment) P25776,P25777,Q7XR52,Q0J9I6,A0A0P0WFN4,A0A0P0WGF4 ORYA_ORYSJ,ORYB_ORYSJ,CYSP1_ORYSJ,Q0J9I6_ORYSJ,A0A0P0WFN4_ORYSJ,A0A0P0WGF4_ORYSJ Os04g0650000 LOC_Os04g55650 H0212B02.7 OSJNBb0059K02.8,Os04g0670200 LOC_Os04g57440 H0818H01.14 OSJNBa0043A12.28,CP1 Os04g0670500 LOC_Os04g57490 OSJNBa0043A12.33,Os04g0650000 Os04g0650000 OSNPB_040650000,Os04g0650000 OSNPB_040650000,Os04g0670200 OSNPB_040670200 DISRUPTION PHENOTYPE: Plants show overall delay of growth and development, and mature plants are dwarf. Panicle of CP1 mutant contains several flowers which remain unfertilized due to the abnormal development of the pollen. {ECO:0000269|PubMed:15356393}. FUNCTION: Probable thiol protease. {ECO:0000250|UniProtKB:P43297}.,FUNCTION: Cysteine protease that may play a role in pollen development (PubMed:15356393). May be regulated by the transcription factor UDT1 in developing anthers and play a role in tapetum development (PubMed:16141453). Positively regulated by the transcription factor TDR in developing anthers and may play a role in tapetum programmed cell death (PCD) (PubMed:17138695). {ECO:0000269|PubMed:15356393, ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:17138695}. ENOG411DWX3 Q9SU15 Q9SU15_ARATH ARM repeat superfamily protein (At4g12710) (Uncharacterized protein At4g12710) (Uncharacterized protein T20K18.60) 43522 ARM repeat superfamily protein (At4g12710) (Uncharacterized protein At4g12710) (Uncharacterized protein T20K18.60) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2135788; AT4G12710 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411DWX2 FBL21,FBL23,FBL22,FBL9,SKIP19 Q9M0U8,Q9S9V9,Q9M0U6,Q9M0U7,Q9S9V8,Q9M0U9,Q6NML4,Q9SY41,Q1G3K0,Q9FHB4,A0A1P8B8Z3 FBL21_ARATH,FBL23_ARATH,FBL22_ARATH,FB221_ARATH,FBL9_ARATH,SKI19_ARATH,Q6NML4_ARATH,Q9SY41_ARATH,Q1G3K0_ARATH,Q9FHB4_ARATH,A0A1P8B8Z3_ARATH Putative F-box/LRR-repeat protein 21,Putative F-box/LRR-repeat protein 23,Putative F-box/LRR-repeat protein 22,Putative F-box protein At4g05475,Putative F-box/LRR-repeat protein 9,F-box protein SKIP19 (F-box/LRR-repeat protein 20) (SKP1-interacting partner 19),At5g52480 (RNI-like superfamily protein),Putative nodulin (RNI-like superfamily protein) (Root nodule development protein-related),F-box/LRR protein,Nodulin-like protein (RNI-like superfamily protein) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 34410,51109,35148,35378,27438,34158,23261,24766,9989,27287,7511 Putative F-box/LRR-repeat protein 21,Putative F-box/LRR-repeat protein 23,Putative F-box/LRR-repeat protein 22,Putative F-box protein At4g05475,Putative F-box/LRR-repeat protein 9,F-box protein SKIP19 (F-box/LRR-repeat protein 20) (SKP1-interacting partner 19),At5g52480 (RNI-like superfamily protein),Putative nodulin (RNI-like superfamily protein) (Root nodule development protein-related),F-box/LRR protein,Nodulin-like protein (RNI-like superfamily protein) nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:2115959;,locus:2115979;,locus:6530298208;,locus:1005716270;,locus:2115949;,locus:2140715;,locus:4010713864;,locus:2156667; AT4G05470,AT4G05500,AT4G05490,AT4G05475,AT4G05497,AT4G05460,AT5G52480,AT4G03630,AT4G03635 f-box family NA NA NA NA NA NA NA ENOG411DWX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Putative expansin-A27 (Alpha-expansin-27) (OsEXP27) (OsEXPA27) (OsaEXPa1.4),Expansin-A31 (Alpha-expansin-31) (OsEXP31) (OsEXPA31) (OsaEXPa1.5) Q7XE35,Q75I75 EXP27_ORYSJ,EXP31_ORYSJ EXPA27 EXP27 Os10g0439100 LOC_Os10g30330,EXPA31 EXP31 Os03g0428700 LOC_Os03g31480 OSJNBa0083F15.7 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DWXN Q9SV05,Q9SGN7,F4HWL9 CCR35_ARATH,CCR12_ARATH,F4HWL9_ARATH Serine/threonine-protein kinase-like protein At3g51990 (EC 2.7.11.1) (CRINKLY 4-related kinase),Serine/threonine-protein kinase-like protein At1g28390 (EC 2.7.11.1) (CRINKLY 4-related kinase),Protein kinase superfamily protein 2.7.11.1 39594,53076,53503 Serine/threonine-protein kinase-like protein At3g51990 (EC 2.7.11.1) (CRINKLY 4-related kinase),Serine/threonine-protein kinase-like protein At1g28390 (EC 2.7.11.1) (CRINKLY 4-related kinase),Protein kinase superfamily protein extracellular region [GO:0005576]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2083815;,locus:2032525; AT3G51990,AT1G28390 Serine threonine-protein kinase-like protein Os05g0387600 protein (Os05g0387700 protein) (cDNA clone:001-114-D09, full insert sequence) Q60E63 Q60E63_ORYSJ Os05g0387700 Os05g0387600 OSJNBa0073E05.13 OSNPB_050387700 ENOG411DWXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridine nucleotide-disulphide oxidoreductase NA NA NA NA NA NA NA ENOG411DWXK MED37A,MED37F,BIP2 Q9LKR3,Q39043,A0A1P8BF32,F4K007 MD37A_ARATH,MD37F_ARATH,A0A1P8BF32_ARATH,F4K007_ARATH Mediator of RNA polymerase II transcription subunit 37a (Heat shock 70 kDa protein 11) (Heat shock protein 70-11) (AtHsp70-11) (Luminal-binding protein 1) (AtBP1) (BiP1),Mediator of RNA polymerase II transcription subunit 37f (Heat shock 70 kDa protein 12) (Heat shock protein 70-12) (AtHsp70-12) (Luminal-binding protein 2) (AtBP2) (BiP2),Heat shock protein 70 (Hsp 70) family protein DISRUPTION PHENOTYPE: Bip1 and bip2 double mutation affects the fusion of polar nuclei during female gametophyte development. {ECO:0000269|PubMed:20080634}. FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors. {ECO:0000269|PubMed:20080634}.; FUNCTION: Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER. Involved in polar nuclei fusion during female gametophyte development and is essential for the regulation of endosperm nuclei proliferation. {ECO:0000269|PubMed:20080634}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000269|PubMed:20080634}.; FUNCTION: Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER. Involved in polar nuclei fusion during female gametophyte development and is essential for the regulation of endosperm nuclei proliferation. {ECO:0000269|PubMed:20080634}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. 73629,73561,74375,67400 Mediator of RNA polymerase II transcription subunit 37a (Heat shock 70 kDa protein 11) (Heat shock protein 70-11) (AtHsp70-11) (Luminal-binding protein 1) (AtBP1) (BiP1),Mediator of RNA polymerase II transcription subunit 37f (Heat shock 70 kDa protein 12) (Heat shock protein 70-12) (AtHsp70-12) (Luminal-binding protein 2) (AtBP2) (BiP2),Heat shock protein 70 (Hsp 70) family protein cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; Golgi apparatus [GO:0005794]; mediator complex [GO:0016592]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; ubiquitin-dependent ERAD pathway [GO:0030433],cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; mediator complex [GO:0016592]; membrane [GO:0016020]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; regulation of transcription, DNA-templated [GO:0006355]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to endoplasmic reticulum stress [GO:0034976]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524] DEVELOPMENTAL STAGE: Down-regulated during seed maturation. Up-regulated during germination. {ECO:0000269|PubMed:11402207}. locus:2182783;,locus:2165715; AT5G28540,AT5G42020 luminal-binding protein Heat shock 70 kDa protein BIP1 (Luminal-binding protein 1) (OsBiP1),Os02g0115900 protein (Fragment) Q6Z7B0,A0A0P0VDX8 BIP1_ORYSJ,A0A0P0VDX8_ORYSJ BIP1 BIP Os02g0115900 LOC_Os02g02410 OJ1442_E05.10 OsJ_05115 P0036E06.29,Os02g0115900 OSNPB_020115900 FUNCTION: Key chaperone involved in folding of secretory proteins in the endoplasmic reticulum (ER) lumen (Probable). Involved in ER quality control for seed storage proteins during seed maturation (PubMed:19567376, PubMed:21223397). Functions as a sensor of the ER stress response, and provides suitable conditions for the production of secretory proteins by alleviating ER stress (PubMed:19567376, PubMed:21223397). {ECO:0000269|PubMed:19567376, ECO:0000269|PubMed:21223397, ECO:0000305|PubMed:21223397}. MISCELLANEOUS: The kernels of the over-expressing transformant exhibit floury and shrunken features due to defects in seed storage proteins and starch synthesis. {ECO:0000269|PubMed:19567376}. ENOG411DWXJ Q8VZ06 Q8VZ06_ARATH Putative SecA-type chloroplast protein transport factor (Putative SecA-type chloroplast transport factor protein) (Uncharacterized protein At1g21655) (Zinc ion binding protein) 90627 Putative SecA-type chloroplast protein transport factor (Putative SecA-type chloroplast transport factor protein) (Uncharacterized protein At1g21655) (Zinc ion binding protein) metal ion binding [GO:0046872] locus:4515102561; AT1G21651 RING Os05g0422300 protein (cDNA clone:J033068K11, full insert sequence) Q6L4Y0 Q6L4Y0_ORYSJ Os05g0422300 OJ1212_B02.1 OSJNBb0092E21.14 OSNPB_050422300 ENOG411DWXI HDA19,HD1 O22446,A8MSD0 HDA19_ARATH,A8MSD0_ARATH Histone deacetylase 19 (AtHD1) (HD) (EC 3.5.1.98),Histone deacetylase (EC 3.5.1.98) Temperature sensitive phenotype. When grown at 24 degrees C seedlings have narrow cotyledons compared to wt. When grown at 29 degrees C seedlings display several tpl-1-like phenotypes including monocots tubes and pins. Both shott and root can be disorganized. At high temperature: Disorganized embryonic root and shoot; Incomplete penetrance of pin-formed and tubular cotyledons and decreased cotyledon number; Slightly narrow cotyledons-E. Meyerowitz-2006 FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. HDA19 is involved in jasmonic acid and ethylene signaling of pathogen response. Part of a repressor complex including APETALA2 (AP2) and TOPLESS (TPL) that control the expression domains of numerous floral organ identity genes (PubMed:23034631). {ECO:0000269|PubMed:11117260, ECO:0000269|PubMed:11134508, ECO:0000269|PubMed:15749761, ECO:0000269|PubMed:16699543, ECO:0000269|PubMed:23034631}. MISCELLANEOUS: Loss-of-function mutant (antisense inhibition) has an increased level of tetraacetylated histone H4 and shows late flowering, developmental pleiotropy and increased symptoms when infected by a pathogen. {ECO:0000269|PubMed:11134508}. R-ATH-1538133; 3.5.1.98; 3.5.1.98 56023,52780 Histone deacetylase 19 (AtHD1) (HD) (EC 3.5.1.98),Histone deacetylase (EC 3.5.1.98) histone deacetylase complex [GO:0000118]; nucleus [GO:0005634]; histone deacetylase activity [GO:0004407]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; DNA mediated transformation [GO:0009294]; histone acetylation [GO:0016573]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; negative regulation of transcription, DNA-templated [GO:0045892]; pathogenesis [GO:0009405]; positive regulation of stem cell population maintenance [GO:1902459]; regulation of multicellular organismal development [GO:2000026]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in leaves, stems, flowers and young siliques. {ECO:0000269|PubMed:11117260, ECO:0000269|PubMed:11134508, ECO:0000269|PubMed:16699543}. locus:2120948; AT4G38130 Histone deacetylase Histone deacetylase 1 (OsHDAC1) (EC 3.5.1.98),Histone deacetylase 3 (OsHDAC3) (EC 3.5.1.98),Histone deacetylase 2 (OsHDAC2) (EC 3.5.1.98),Histone deacetylase HDAC3-like (Os02g0214900 protein),Os02g0215200 protein Q7Y0Y8,Q7Y0Y6,Q6YV04,Q69VQ0,A0A0N7KEX5 HDAC1_ORYSJ,HDAC3_ORYSJ,HDAC2_ORYSJ,Q69VQ0_ORYSJ,A0A0N7KEX5_ORYSJ HDAC1 HDA702 Os06g0583400 LOC_Os06g38470 P0498C03.28-1,HDAC3 HDA703 Os02g0214900 LOC_Os02g12350 OJ1006_D05.27-1,HDAC2 HDA710 Os02g0215200 LOC_Os02g12380 B1307A11.3-1 OJ1006_D05.31-1 OsJ_05884,OJ1006_D05.27-2 Os02g0214900 OSNPB_020214900,Os02g0215200 OSNPB_020215200 "FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (Probable). Regulates negatively the expression of the NAC48/NAC6 gene that controls root growth in seedlings. Epigenetically represses the expression of NAC48/NAC6 by deacetylating ""Lys-9"" (H3K9ac), ""Lys-14"" (H3K14ac) and ""Lys-18"" (H3K18ac) of histone H3, and ""Lys-5"" (H4K5ac), ""Lys-12"" (H4K12ac) and ""Lys-16"" (H4K16ac) of histone H4 (PubMed:19453457). Functions in the regulation of gene expression in the whole genome (PubMed:12581311). Acts as chromatin remodeling regulator to promote the formation of a repressive chromatin state. Functions with MODD via its interaction with TPR3, to down-regulates the histone acetylation level at BZIP46 target genes. BZIP46 is a positive regulator of abscisic acid (ABA) signaling and drought stress tolerance (PubMed:27468891). {ECO:0000269|PubMed:12581311, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:27468891, ECO:0000305|PubMed:19453457}.,FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. {ECO:0000250|UniProtKB:O22446}." MISCELLANEOUS: Plants over-expressing HDAC1 exhibit increased growth rate and altered plant architecture (PubMed:12581311). Plants silencing HDAC1 exhibit narrow leaves, reduced diameter of stems and reduced plant height (PubMed:19664599). {ECO:0000269|PubMed:12581311, ECO:0000269|PubMed:19664599}.,MISCELLANEOUS: Plants silencing HDAC3 exhibit reduced peduncle elongation and fertility. {ECO:0000269|PubMed:19664599}.,MISCELLANEOUS: Plants silencing HDAC3 exhibit semi-dwarf phenotype. {ECO:0000269|PubMed:19664599}. ENOG411DWXH MSH5 F4JEP5,A0A1I9LLC6,A0A1I9LLC7 MSH5_ARATH,A0A1I9LLC6_ARATH,A0A1I9LLC7_ARATH DNA mismatch repair protein MSH5 (AtMSH5) (MutS protein homolog 5),MUTS-homologue 5 DISRUPTION PHENOTYPE: Normal vegetative growth but severe reduction in fertility due to a decrease in chiasma frequency at metaphase I of meiosis. {ECO:0000269|PubMed:18318687, ECO:0000269|PubMed:18379590, ECO:0000269|PubMed:18812090, ECO:0000269|PubMed:21771883}. Reduced fertility. Reduced silique length. Reduced chiasma frequency.,Reduced number of chiasmata. Reduced fertility-G. Jones-2008 FUNCTION: Involved in meiotic recombination in association with MSH4. Required for reciprocal recombination and proper segregation of homologous chromosomes at meiosis. Promotes homologous recombination through facilitating chiasma formation during prophase I. Involved in the control of class I crossovers formation. {ECO:0000269|PubMed:18318687, ECO:0000269|PubMed:18379590, ECO:0000269|PubMed:18812090, ECO:0000269|PubMed:21771883}. 91123,86887,88292 DNA mismatch repair protein MSH5 (AtMSH5) (MutS protein homolog 5),MUTS-homologue 5 condensed nuclear chromosome [GO:0000794]; germ cell nucleus [GO:0043073]; synaptonemal complex [GO:0000795]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; mismatched DNA binding [GO:0030983]; chiasma assembly [GO:0051026]; homologous chromosome segregation [GO:0045143]; meiotic mismatch repair involved in reciprocal meiotic recombination [GO:0010777]; mismatch repair [GO:0006298]; reciprocal meiotic recombination [GO:0007131],ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:18318687, ECO:0000269|PubMed:18379590}. locus:2092404; AT3G20475 mutS protein homolog DNA mismatch repair protein MSH5 (OsMSH5) (MutS protein homolog 5) Q6L4V0 MSH5_ORYSJ MSH5 Os05g0498300 LOC_Os05g41880 P0010D04.9 DISRUPTION PHENOTYPE: Normal vegetative growth but severe reduction in fertility due to a decrease in chiasma frequency at metaphase I of meiosis. {ECO:0000269|PubMed:23220939}. FUNCTION: Involved in meiotic recombination. Required for reciprocal recombination and proper segregation of homologous chromosomes at meiosis. Promotes homologous recombination through facilitating chiasma formation during prophase I. Involved in the control of class I crossover (interference-sensitive crossover) formation. {ECO:0000269|PubMed:23220939}. ENOG411DWXG PUB25,PUB26 Q9LT79,Q9FXA4 PUB25_ARATH,PUB26_ARATH U-box domain-containing protein 25 (EC 2.3.2.27) (Plant U-box protein 25) (RING-type E3 ubiquitin transferase PUB25),U-box domain-containing protein 26 (EC 2.3.2.27) (Plant U-box protein 26) (RING-type E3 ubiquitin transferase PUB26) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 46056,45963 U-box domain-containing protein 25 (EC 2.3.2.27) (Plant U-box protein 25) (RING-type E3 ubiquitin transferase PUB25),U-box domain-containing protein 26 (EC 2.3.2.27) (Plant U-box protein 26) (RING-type E3 ubiquitin transferase PUB26) ubiquitin-protein transferase activity [GO:0004842]; response to chitin [GO:0010200],ubiquitin-protein transferase activity [GO:0004842] locus:2090604;,locus:2012136; AT3G19380,AT1G49780 U-box domain-containing protein Os02g0548700 protein Q0E0I9 Q0E0I9_ORYSJ Os02g0548700 Os02g0548700 OSNPB_020548700 ENOG411DWXF PPL1 P82538 PPL1_ARATH PsbP-like protein 1, chloroplastic (OEC23-like protein 4) (PsbP-related thylakoid lumenal protein 2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17827269}. FUNCTION: Required for efficient repair of photodamaged PSII, but not tightly associated with the complex. {ECO:0000269|PubMed:17827269}. 25623 PsbP-like protein 1, chloroplastic (OEC23-like protein 4) (PsbP-related thylakoid lumenal protein 2) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2100681; AT3G55330 PsbP-like protein Os10g0461100 protein (PsbP family protein, expressed),Os10g0461100 protein (PsbP family protein, expressed) (cDNA clone:J013158D14, full insert sequence) (cDNA, clone: J100059O14, full insert sequence),Os10g0461100 protein (Os10g0461400 protein) (Fragment),Os08g0347500 protein Q109L0,Q109K8,A0A0P0XUY5,A0A0P0XF80 Q109L0_ORYSJ,Q109K8_ORYSJ,A0A0P0XUY5_ORYSJ,A0A0P0XF80_ORYSJ LOC_Os10g32348 Os10g0461100 OSNPB_100461100,Os10g0461100 LOC_Os10g32348 OSNPB_100461100,Os10g0461400 Os10g0461100 OSNPB_100461100 OSNPB_100461400,Os08g0347500 OSNPB_080347500 ENOG411DWXE Q9C6M1,Q9SX28 GDT14_ARATH,GDT15_ARATH GDT1-like protein 4,GDT1-like protein 5 24809,24665 GDT1-like protein 4,GDT1-like protein 5 integral component of membrane [GO:0016021]; response to karrikin [GO:0080167],integral component of membrane [GO:0016021] locus:2031195;,locus:2026879; AT1G25520,AT1G68650 GDT1-like protein GDT1-like protein 5 B9G125 GDT15_ORYSJ Os08g0433100 LOC_Os08g33630 OsJ_27425 P0431A03.16 ENOG411DWXD Q8S8S8 Q8S8S8_ARATH At2g19385 (Expressed protein) (Zinc ion binding protein) 30657 At2g19385 (Expressed protein) (Zinc ion binding protein) nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:505006255; AT2G19385 LYAR-type C2HC zinc finger Os01g0583200 protein (RNA-binding protein-like) (cDNA clone:J033128B21, full insert sequence) Q5ZB81 Q5ZB81_ORYSJ Os01g0583200 Os01g0583200 B1097D05.39 OsJ_02364 OSNPB_010583200 ENOG411DWXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat protein Os01g0506200 protein (Tetratricopeptide repeat domain 5-like protein) (cDNA clone:J033011J18, full insert sequence) Q5QN89 Q5QN89_ORYSJ Os01g0506200 OSNPB_010506200 P0436D06.46 ENOG411DWXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Set and mynd domain containing Os08g0433300 protein (SET-domain transcriptional regulator-like protein) Q6ZA95 Q6ZA95_ORYSJ Os08g0433300 OsJ_27427 OSNPB_080433300 P0431A03.18 ENOG411DWXA Q5E911 Q5E911_ARATH At4g32050 (Neurochondrin family protein) 68271 At4g32050 (Neurochondrin family protein) locus:2116647; AT4G32050 Neurochondrin Os02g0798700 protein (Fragment) A0A0P0VR14 A0A0P0VR14_ORYSJ Os02g0798700 OSNPB_020798700 ENOG411DWXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIFY Protein TIFY 10a (OsTIFY10a) (Jasmonate ZIM domain-containing protein 6) (OsJAZ6) (OsJAZ5),Os03g0402800 protein (Fragment) Q84R94,A0A0P0VZ55 TI10A_ORYSJ,A0A0P0VZ55_ORYSJ TIFY10A JAZ6 Os03g0402800 LOC_Os03g28940 OsJ_11194 OSJNBb0041J20.5,Os03g0402800 OSNPB_030402800 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411DWXY PCMP-E27 Q9LS72 PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 67338 Pentatricopeptide repeat-containing protein At3g29230 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2094812; AT3G29230 Pentatricopeptide repeat-containing protein Os12g0578000 protein (Fragment) A0A0P0YC47 A0A0P0YC47_ORYSJ Os12g0578000 OSNPB_120578000 ENOG411DWXX TRM9 Q8RWY1,F4I9F8,A0A1P8ATR1 Q8RWY1_ARATH,F4I9F8_ARATH,A0A1P8ATR1_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g31605),RNA-binding (RRM/RBD/RNP motifs) family protein FUNCTION: Binds tRNA and catalyzes the iron and alpha-ketoglutarate dependent hydroxylation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA via its dioxygenase domain, giving rise to 5-(S)-methoxycarbonylhydroxymethyluridine. {ECO:0000269|PubMed:21653555}. 48392,38194,38424 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g31605),RNA-binding (RRM/RBD/RNP motifs) family protein dioxygenase activity [GO:0051213]; ferrous iron binding [GO:0008198]; RNA binding [GO:0003723]; tRNA wobble uridine modification [GO:0002098],oxidoreductase activity [GO:0016491]; RNA binding [GO:0003723] locus:2028631; AT1G31600 Alkylated DNA repair protein alkB homolog OSJNBa0041A02.16 protein (Os04g0602700 protein) Q7XTQ3 Q7XTQ3_ORYSJ Os04g0602700 Os04g0602700 OsJ_16049 OSJNBa0041A02.16 OSNPB_040602700 ENOG411DWXW IPCS3,AtIPCS3 Q56Y01,A0A1P8B0S8 IPCS3_ARATH,A0A1P8B0S8_ARATH Phosphatidylinositol:ceramide inositolphosphotransferase 3 (EC 2.7.8.-) (Inositol-phosphorylceramide synthase 3) (AtIPCS3) (IPC synthase 3) (Protein ERH1-like1) (Sphingolipid synthase 3),Inositol phosphorylceramide synthase 3 FUNCTION: Catalyzes the transfer of the phosphorylinositol group from phosphatidylinositol (PI) to phytoceramide, an essential step in sphingolipid biosynthesis. {ECO:0000269|PubMed:20309609}. ARA:GQT-1628-MONOMER; 2.7.8.- 32981,20251 Phosphatidylinositol:ceramide inositolphosphotransferase 3 (EC 2.7.8.-) (Inositol-phosphorylceramide synthase 3) (AtIPCS3) (IPC synthase 3) (Protein ERH1-like1) (Sphingolipid synthase 3),Inositol phosphorylceramide synthase 3 integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; inositol phosphoceramide synthase activity [GO:0045140]; sphingolipid biosynthetic process [GO:0030148],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Mostly expressed in stems and flowers, and, to a lower extent, in leaves, roots and siliques. {ECO:0000269|PubMed:20309609}. locus:504956063; AT2G29525 Catalyzes the transfer of the phosphorylinositol group from phosphatidylinositol (PI) to phytoceramide an essential step in sphingolipid biosynthesis Phosphatidylinositol:ceramide inositolphosphotransferase (EC 2.7.8.-) (Inositol-phosphorylceramide synthase) (IPC synthase) (Protein ENHANCING RPW8-MEDIATED HR-LIKE CELL DEATH 1) (Sphingolipid synthase),Os05g0287800 protein (cDNA clone:J023110H06, full insert sequence),Os05g0452900 protein (cDNA clone:001-025-C09, full insert sequence) (cDNA clone:J023026O17, full insert sequence),Os05g0452900 protein Q5N7A7,Q0DJG3,Q6I647,A0A0P0WN58 IPCS_ORYSJ,Q0DJG3_ORYSJ,Q6I647_ORYSJ,A0A0P0WN58_ORYSJ ERH1 Os01g0850100 OsJ_04087 P0414E03.14 P0529H11.3,Os05g0287800 P0697B04.12 Os05g0287800 OSNPB_050287800,Os05g0452900 Os05g0452900 OJ1126_D01.3 OSNPB_050452900,Os05g0452900 OSNPB_050452900 DISRUPTION PHENOTYPE: Reduced plant stature. Spontaneous HR-like cell death (SHL). {ECO:0000269|PubMed:19001565}. FUNCTION: Catalyzes the transfer of the phosphorylinositol group from phosphatidylinositol (PI) to phytoceramide, an essential step in sphingolipid biosynthesis. May play an important role in modulating plant programmed cell death (PCD) associated with defense by promoting sphingolipid metabolism and regulating ceramide accumulation. {ECO:0000269|PubMed:19001565}. ENOG411DWXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DIL domain Os01g0584200 protein A0A0P0V4I7 A0A0P0V4I7_ORYSJ Os01g0584200 OSNPB_010584200 ENOG411DWXU ISPF Q9CAK8 ISPF_ARATH 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (MECDP-synthase) (MECPS) (MECS) (EC 4.6.1.12) DISRUPTION PHENOTYPE: Albino phenotype and seedling lethal when homozygous. The phenotype is caused by an early arrest in chloroplast differentiation. {ECO:0000269|PubMed:16231155}. Albino plants where total clorophylls and cartenoids are less than 1% and 2% respectively of wildtype contents.,Chloroplasts of mesophyll cells completely lack thylakoids and are filled with large vesicles.,Round-shaped chloroplasts in mesophyll cells of mutant (lens-shaped in wildtype). Seedling lethal; Albino; Chloroplasts are filled with vesicles instead of thylakoids-H. Goodman-2006 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate into 2C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP. Also converts 4-diphosphocytidyl-2C-methyl-D-erythritol into 2C-methyl-D-erythritol 3,4-cyclophosphate and CMP. Is essential for chloroplast development. {ECO:0000269|PubMed:16231155}. PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 4/6. ARA:AT1G63970-MONOMER;MetaCyc:AT1G63970-MONOMER; 4.6.1.12; 4.6.1.12 24812 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (MECDP-synthase) (MECPS) (MECS) (EC 4.6.1.12) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [GO:0008685]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; chlorophyll biosynthetic process [GO:0015995]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288] locus:2024618; AT1G63970 2c-methyl-d-erythritol 24-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (MECDP-synthase) (MECPS) (MECS) (EC 4.6.1.12),2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Q6EPN6,A0A0N7KFV8 ISPF_ORYSJ,A0A0N7KFV8_ORYSJ ISPF Os02g0680600 LOC_Os02g45660 P0663F07.27,Os02g0680600 OSNPB_020680600 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate into 2C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP. Also converts 4-diphosphocytidyl-2C-methyl-D-erythritol into 2C-methyl-D-erythritol 3,4-cyclophosphate and CMP. Is essential for chloroplast development (By similarity). {ECO:0000250}. ENOG411DWXT Q9LTD7 Q9LTD7_ARATH Similarity to unknown protein 53168 Similarity to unknown protein locus:2151451; AT5G51670 Domain of unknown function (DUF3475) Expressed protein (Os03g0858600 protein) (cDNA clone:J033088D07, full insert sequence) Q10AB4 Q10AB4_ORYSJ Os03g0858600 LOC_Os03g64130 Os03g0858600 OSNPB_030858600 ENOG411DWXS TULP7 Q93VI8 TLP7_ARATH Tubby-like F-box protein 7 (AtTLP7) 42178 Tubby-like F-box protein 7 (AtTLP7) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plastid [GO:0009536]; phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15064372}. locus:2009610; AT1G53320 tubby-like F-box protein Tubby-like F-box protein 10 (OsTLP10) (Tubby-like F-box protein 11) (OsTLP11),Tubby-like F-box protein 2 (OsTLP2) (Tubby-like F-box protein 12) (OsTLP12),Tubby-like F-box protein 1 (OsTLP1) (Tubby-like F-box protein 9) (OsTLP9),Tubby-like F-box protein 9 (OsTLP9) (Tubby-like F-box protein 10) (OsTLP10),Tubby-like F-box protein (Fragment) Q688Y7,Q94DT9,Q5QM27,Q68Y48,A0A0P0V6E3 TLP10_ORYSJ,TLP2_ORYSJ,TLP1_ORYSJ,TLP9_ORYSJ,A0A0P0V6E3_ORYSJ TULP10 TULP11 Os05g0560400 LOC_Os05g48670 OJ1115_B06.6,TULP2 TULP12 Os01g0759100 LOC_Os01g55430 B1131G08.31 OsJ_03520 P0460E08.4,TULP1 TULP9 Os01g0674500 LOC_Os01g48370 OJ1117_G01.2-1 P0485G01.36-1,TULP9 TULP10 Os05g0514300 LOC_Os05g43850 OsJ_018408 OsJ_19188 P0022D06.6,Os01g0674500 OSNPB_010674500 ENOG411DWXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA vesicle-associated membrane protein Os03g0165800 protein (Vesicle-associated membrane protein 724, putative, expressed) (cDNA clone:J023008N15, full insert sequence) Q10RB1 Q10RB1_ORYSJ Os03g0165800 LOC_Os03g06960 Os03g0165800 OSNPB_030165800 ENOG411DWXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isopentenyl transferase Adenylate isopentenyltransferase (Os05g0311801 protein) Q33CD8 Q33CD8_ORYSJ OsIPT3 Os05g0311801 OsJ_18010 OSNPB_050311801 ENOG411DWXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA amino acid transporter Os01g0825800 protein (Putative N system amino acids transporter NAT-1) (cDNA clone:J033087L14, full insert sequence),Amino acid transporter-like protein (Os01g0825800 protein) Q5QMB0,Q5QMA9 Q5QMB0_ORYSJ,Q5QMA9_ORYSJ P0439E11.18-1 Os01g0825800 OSNPB_010825800,P0439E11.18-2 Os01g0825800 OSNPB_010825800 ENOG411E2BM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411EFZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411EFZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZG XERO1 P25863 XERO1_ARATH Dehydrin Xero 1 13435 Dehydrin Xero 1 cytosol [GO:0005829]; cold acclimation [GO:0009631]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] locus:2080923; AT3G50980 Dehydrin NA NA NA NA NA NA NA ENOG411EFZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZI AGL93,AGL53,AGAMOUS-like 54,AGL101,F2P16.19,AGL89,AGL54 Q7X9H9,Q7X9N2,Q9S9U2,Q4PSE3,O04632,Q7XJL1,B3H5S0,B3H507 AGL93_ARATH,AGL53_ARATH,Q9S9U2_ARATH,Q4PSE3_ARATH,O04632_ARATH,Q7XJL1_ARATH,B3H5S0_ARATH,B3H507_ARATH Agamous-like MADS-box protein AGL93,Agamous-like MADS-box protein AGL53,AGAMOUS-like 54 (F15P11.1 protein) (MADS-box protein AGL54),AGAMOUS-like 101 (MADS-box family protein),AGAMOUS-like MADS-box protein (F2P16.19 protein),AGAMOUS-like 89 (At5g27580) (MADS-box family protein) (MADS-box protein AGL89) (Uncharacterized protein At5g27580),MADS-box transcription factor family protein,AGAMOUS-like 54 FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. 32755,32684,21738,14189,14897,25590,25783,17951 Agamous-like MADS-box protein AGL93,Agamous-like MADS-box protein AGL53,AGAMOUS-like 54 (F15P11.1 protein) (MADS-box protein AGL54),AGAMOUS-like 101 (MADS-box family protein),AGAMOUS-like MADS-box protein (F2P16.19 protein),AGAMOUS-like 89 (At5g27580) (MADS-box family protein) (MADS-box protein AGL89) (Uncharacterized protein At5g27580),MADS-box transcription factor family protein,AGAMOUS-like 54 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; plasma membrane [GO:0005886]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. locus:2148468;,locus:2144397;,locus:2144377;,locus:2144387;,locus:2143646;,locus:4515103623; AT5G26950,AT5G27070,AT5G27090,AT5G27050,AT5G27580,AT5G27944 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EFZU KNATM F4HXU3 KNATM_ARATH Protein KNATM (KNOX Arabidopsis thaliana MEINOX protein) FUNCTION: Isoform KNATM-B: Transcriptional regulator involved in leaf proximal/distal patterning. May act by sequestering BELL transcription factors. {ECO:0000269|PubMed:18398054}. 16439 Protein KNATM (KNOX Arabidopsis thaliana MEINOX protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; leaf proximal/distal pattern formation [GO:0010589]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Detected in inflorescences, seedlings, leaves, hydathodes, stems, roots, embryo and siliques. Expressed in a polar pattern in organ primordia and at the boundary of mature organs. Detected in the lateral domains of flower meristems, but not in the inflorescence meristem or the vegetative shoot apical meristem. {ECO:0000269|PubMed:18398054}. locus:2006782; AT1G14760 knox arabidopsis thaliana meinox NA NA NA NA NA NA NA ENOG411EFZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411EFZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1517) Os08g0119200 protein A0A0N7KP68 A0A0N7KP68_ORYSJ Os08g0119200 OSNPB_080119200 ENOG411EHWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os01g0744850 protein A0A0P0V846 A0A0P0V846_ORYSJ Os01g0744850 OSNPB_010744850 ENOG411EHWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family NA NA NA NA NA NA NA ENOG411EHWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0269500 protein (cDNA clone:001-106-E12, full insert sequence) Q0J6T8 Q0J6T8_ORYSJ Os08g0269500 Os08g0269500 OsJ_26682 OSNPB_080269500 ENOG411EHWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0211800 protein (cDNA clone:001-024-A10, full insert sequence) Q2R8Y4 Q2R8Y4_ORYSJ LOC_Os11g10590 Os11g0211800 OsJ_33341 OSNPB_110211800 ENOG411EHWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EHWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0615400 protein,Os02g0614966 protein A0A0P0VLJ3,A0A0N7KFP1 A0A0P0VLJ3_ORYSJ,A0A0N7KFP1_ORYSJ Os02g0615400 OSNPB_020615400,Os02g0614966 OSNPB_020614966 ENOG411EM82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0108300 protein A0A0P0XXX5 A0A0P0XXX5_ORYSJ Os11g0108300 OSNPB_110108300 ENOG411EM83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain NA NA NA NA NA NA NA ENOG411EM80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain Os07g0558800 protein (Putative 27k vesicle-associated membrane protein-associated protein) (cDNA clone:J023145E05, full insert sequence) Q6Z407 Q6Z407_ORYSJ Os07g0558800 Os07g0558800 OSNPB_070558800 P0567H04.18 ENOG411EM86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411EM84 PVA42 Q8VYN2,F4JJI7 VAP42_ARATH,F4JJI7_ARATH Vesicle-associated protein 4-2 (Plant VAP homolog 4-2) (AtPVA42) (VAMP-associated protein 4-2),PapD-like superfamily protein FUNCTION: May play a role in vesicle trafficking. {ECO:0000250}. 32964,35188 Vesicle-associated protein 4-2 (Plant VAP homolog 4-2) (AtPVA42) (VAMP-associated protein 4-2),PapD-like superfamily protein endoplasmic reticulum membrane [GO:0005789],endoplasmic reticulum membrane [GO:0005789]; plasma membrane [GO:0005886] locus:2119632; AT4G21450 MSP (Major sperm protein) domain NA NA NA NA NA NA NA ENOG411EM85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAA transporter family NA NA NA NA NA NA NA ENOG411EM8X Q9LU37,Q9ASW4 Q9LU37_ARATH,Q9ASW4_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein,AT3G21215 protein (At3g21211) (At3g21211/At3g21211) (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At3g21215) 34832,36980 RNA-binding (RRM/RBD/RNP motifs) family protein,AT3G21215 protein (At3g21211) (At3g21211/At3g21211) (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At3g21215) RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:504955737; AT3G21215 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bromodomain associated family protein expressed NA NA NA NA NA NA NA ENOG411EM8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTP NA NA NA NA NA NA NA ENOG411EM8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0517000 protein A3AVK8 A3AVK8_ORYSJ Os04g0517000 OsJ_15469 OSNPB_040517000 ENOG411EM8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM8W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF618 NA NA NA NA NA NA NA ENOG411EM8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FR47-like protein Acetyltransferase, GNAT family protein, expressed (Os10g0500400 protein) (cDNA clone:002-188-D04, full insert sequence) Q337G6 Q337G6_ORYSJ Os10g0500400 LOC_Os10g35680 Os10g0500400 OsJ_32053 OSNPB_100500400 ENOG411EM8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM8I F21O3.19 Q9SRR8 Q9SRR8_ARATH 2Fe-2S ferredoxin-like superfamily protein (F21O3.19 protein) (Uncharacterized protein At3g07480) (Uncharacterized protein F21O3.19) 17602 2Fe-2S ferredoxin-like superfamily protein (F21O3.19 protein) (Uncharacterized protein At3g07480) (Uncharacterized protein F21O3.19) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; electron carrier activity [GO:0009055]; iron-sulfur cluster binding [GO:0051536]; response to cytokinin [GO:0009735] locus:2079611; AT3G07480 NA NA NA NA NA NA NA NA ENOG411EM8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0568000 protein (cDNA clone:J013160I10, full insert sequence),Os09g0568000 protein (Fragment) Q652Q6,A0A0P0XQR1,A0A0P0XR19 Q652Q6_ORYSJ,A0A0P0XQR1_ORYSJ,A0A0P0XR19_ORYSJ Os09g0568000 OJ1003_C09.7-1 OsJ_30394 OSNPB_090568000,Os09g0568000 OSNPB_090568000 ENOG411EM8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hemerythrin HHE cation binding domain NA NA NA NA NA NA NA ENOG411EM8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hemerythrin HHE cation binding domain Os01g0861700 protein Q5N7H0 Q5N7H0_ORYSJ Os01g0861700 OsJ_04155 OSNPB_010861700 P0423B08.5 P0679C12.46 ENOG411EM8A Q84WV5,A0A1P8AZZ0,F4IV43 Q84WV5_ARATH,A0A1P8AZZ0_ARATH,F4IV43_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At2g44970),Alpha/beta-Hydrolases superfamily protein 54725,52718,54626 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At2g44970),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2054977; AT2G44970 NA Expressed protein (Os12g0110100 protein) (cDNA clone:J013102P17, full insert sequence),Os11g0110000 protein (Fragment) Q2QYQ2,A0A0P0XYF7 Q2QYQ2_ORYSJ,A0A0P0XYF7_ORYSJ LOC_Os12g01930 Os12g0110100 OSNPB_120110100,Os11g0110000 OSNPB_110110000 ENOG411EM8F IQM2 Q9LHN9 IQM2_ARATH IQ domain-containing protein IQM2 (IQ motif-containing protein 2) DISRUPTION PHENOTYPE: Long hypocotyl phenotype. {ECO:0000269|Ref.3}. FUNCTION: May be involved in biotic and abiotic stress responses. {ECO:0000250|UniProtKB:O82645}. 68946 IQ domain-containing protein IQM2 (IQ motif-containing protein 2) cytoplasm [GO:0005737]; nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, stems, flowers and siliques, and at lower levels in roots. {ECO:0000269|Ref.3}. locus:2086819; AT3G13600 Inherit from NOG: Calmodulin-binding NA NA NA NA NA NA NA ENOG411EM8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0514600 protein Q69IM6 Q69IM6_ORYSJ Os09g0514600 Os09g0514600 OsJ_30000 OSNPB_090514600 P0450E05.20 ENOG411EM8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hemerythrin HHE cation binding domain NA NA NA NA NA NA NA ENOG411EM8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calmodulin-binding protein NA NA NA NA NA NA NA ENOG411DRDD T27I1.12 O80601,A0A1P8AV19,A0A1P8AV10,A0A1P8AUX8 O80601_ARATH,A0A1P8AV19_ARATH,A0A1P8AV10_ARATH,A0A1P8AUX8_ARATH Protein prenylyltransferase superfamily protein (T27I1.12 protein),Protein prenylyltransferase superfamily protein 48646,46894,35094,35434 Protein prenylyltransferase superfamily protein (T27I1.12 protein),Protein prenylyltransferase superfamily protein cytoplasm [GO:0005737]; transferase complex [GO:1990234]; protein prenyltransferase activity [GO:0008318]; protein prenylation [GO:0018342],protein prenyltransferase activity [GO:0008318]; protein prenylation [GO:0018342] locus:1005716686; AT1G10095 protein prenyltransferase alpha Os01g0684800 protein (Fragment) A0A0P0V6P5 A0A0P0V6P5_ORYSJ Os01g0684800 OSNPB_010684800 ENOG411DRDE TON1A,TON1B Q9FQ25,Q9FQ24 TON1A_ARATH,TON1B_ARATH Protein TONNEAU 1a (Protein TONNEAU 1),Protein TONNEAU 1b DISRUPTION PHENOTYPE: Extreme defects in morphogenesis, positioning of mitotic division planes and cellular organization due to dysfunction of the cortical cytoskeleton and absence of the preprophase band of microtubules. In the ton1 insertional mutant, the two highly similar genes in tandem, TON1A and TON1B are simultaneously disrupted. {ECO:0000269|PubMed:18757558}.,DISRUPTION PHENOTYPE: Extreme defects in morphogenesis, positioning of mitotic planes and cellular organization due to dysfunction of the cortical cytoskeleton and absence of the preprophase band of microtubules. In the ton1 insertional mutant, the two highly similar genes in tandem, TON1A and TON1B are simultaneously disrupted. {ECO:0000269|PubMed:18757558}. FUNCTION: Involved in the control of the dynamic organization of the cortical cytoskeleton. May play a role in the organization of microtubule arrays at the centrosome through interaction with centrin 1 (CEN1). {ECO:0000269|PubMed:18757558}. 29334,29185 Protein TONNEAU 1a (Protein TONNEAU 1),Protein TONNEAU 1b cell cortex [GO:0005938]; cortical cytoskeleton [GO:0030863]; cortical microtubule cytoskeleton [GO:0030981]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; preprophase band [GO:0009574]; cortical cytoskeleton organization [GO:0030865]; microtubule cytoskeleton organization [GO:0000226]; preprophase band assembly [GO:0000913],cortical microtubule cytoskeleton [GO:0030981]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; cortical cytoskeleton organization [GO:0030865]; microtubule cytoskeleton organization [GO:0000226]; preprophase band assembly [GO:0000913] locus:2082662;,locus:505006399; AT3G55000,AT3G55005 Tonneau 1b Os11g0102600 protein (Os12g0102200 protein) (Tonneau 1b, putative, expressed) Q2QYY5 Q2QYY5_ORYSJ LOC_Os11g01170 LOC_Os12g01170 Os11g0102600 Os12g0102200 OsJ_34893 OSNPB_110102600 OSNPB_120102200 ENOG411DRDC EAF1B,EAF1A F4J7T2,F4J7T3,A0A1I9LL80,A0A1I9LPB0,F4J7T1,A0A1I9LPB1 EAF1B_ARATH,EAF1A_ARATH,A0A1I9LL80_ARATH,A0A1I9LPB0_ARATH,F4J7T1_ARATH,A0A1I9LPB1_ARATH Chromatin modification-related protein EAF1 B (ESA1-associated factor 1 B),Chromatin modification-related protein EAF1 A (ESA1-associated factor 1 A),Helicase/SANT-associated, DNA binding protein FUNCTION: Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000269|Ref.3}. MISCELLANEOUS: Decreased expression of EAF1A leads to decreased levels of H4K5 acetylation in the promoter region of major flowering regulator genes, decreased FLC expression and early flowering. {ECO:0000269|Ref.3}. 206412,211667,206673,152482,205229,206184 Chromatin modification-related protein EAF1 B (ESA1-associated factor 1 B),Chromatin modification-related protein EAF1 A (ESA1-associated factor 1 A),Helicase/SANT-associated, DNA binding protein apoplast [GO:0048046]; NuA4 histone acetyltransferase complex [GO:0035267]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone H4-K5 acetylation [GO:0043981]; regulation of flower development [GO:0009909]; regulation of photoperiodism, flowering [GO:2000028]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510],NuA4 histone acetyltransferase complex [GO:0035267]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone H4-K5 acetylation [GO:0043981]; regulation of flower development [GO:0009909]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510],DNA binding [GO:0003677]; helicase activity [GO:0004386] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|Ref.3}. locus:2087298;,locus:2087308; AT3G24870,AT3G24880 DNA binding Os08g0177300 protein,Os05g0593300 protein (Fragment),Os05g0593550 protein (Fragment),Os08g0177300 protein (Fragment) Q6ZBS5,A0A0P0WR29,A0A0P0WRN7,A0A0P0XCP5 Q6ZBS5_ORYSJ,A0A0P0WR29_ORYSJ,A0A0P0WRN7_ORYSJ,A0A0P0XCP5_ORYSJ Os08g0177300 Os08g0177300 OJ1120_C08.13 OSNPB_080177300 P0583B06.21,Os05g0593300 OSNPB_050593300,Os05g0593550 OSNPB_050593550,Os08g0177300 OSNPB_080177300 ENOG411DRDA BT3 Q9SYL0 BT3_ARATH BTB/POZ and TAZ domain-containing protein 3 (BTB and TAZ domain protein 3) Reduced seed set and shortened siliques. Phenotype is identical to bt2-3/+;bt3-1/+,Embryo lethal - not recovered.,same as smb-3 single mutant,Double homozygotes are embryo lethal. Double heterozygotes have short siliques and a reduced seed set. FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Essential for female and male gametophyte development. {ECO:0000269|PubMed:19054356}. PATHWAY: Protein modification; protein ubiquitination. 41524 BTB/POZ and TAZ domain-containing protein 3 (BTB and TAZ domain protein 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; calmodulin binding [GO:0005516]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; ubiquitin protein ligase binding [GO:0031625]; zinc ion binding [GO:0008270]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; response to ethylene [GO:0009723]; response to hydrogen peroxide [GO:0042542]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Preferentially expressed in leaves. {ECO:0000269|PubMed:15316289}. locus:2031993; AT1G05690 BTB and TAZ domain protein 3 NA NA NA NA NA NA NA ENOG411DRDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 B1340F09.13 protein (OSJNBa0027H09.4 protein) (Os04g0128001 protein),B1340F09.15 protein (OSJNBa0027H09.6 protein) (Os04g0128400 protein),Os03g0621250 protein Q7XP35,Q7XP33,A0A0P0W0I9 Q7XP35_ORYSJ,Q7XP33_ORYSJ,A0A0P0W0I9_ORYSJ Os04g0128001 B1340F09.13 OSJNBa0027H09.4 OSNPB_040128001,Os04g0128400 B1340F09.15 OSJNBa0027H09.6 OSNPB_040128400,Os03g0621250 OSNPB_030621250 ENOG411DRDJ ARF6,ARF8 Q9ZTX8,Q9FGV1,A0A1P8BCS5 ARFF_ARATH,ARFH_ARATH,A0A1P8BCS5_ARATH Auxin response factor 6,Auxin response factor 8 (Protein FRUIT WITHOUT FERTILIZATION),Auxin response factor DISRUPTION PHENOTYPE: Seedless (parthenocarpic) fruit. {ECO:0000269|PubMed:16829592}. no obvious auxin-related growth phenotype,Short stamens reduced fertility.,Twisted leaves reduced fertility short stamensdwarf stature closed flower buds (no anthesis) anthers do not dehisce short stems.,arf8-4 mutation results in the uncoupling of fruit development from pollination and fertilization and gives rise to seedless (parthenocarpic) fruit. Short petals and stamens; Reduced fertility; Slightly shorter primary inflorescence stem; Short hypocotyl in the dark-J. Reed-2005,Long hypocotyl; Slightly shorter inflorescence stems; Reduced fertility; Short hypocotyl in the dark-J. Reed-2005 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 103257,90148,79898 Auxin response factor 6,Auxin response factor 8 (Protein FRUIT WITHOUT FERTILIZATION),Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; flower development [GO:0009908]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; flower development [GO:0009908]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. {ECO:0000269|PubMed:16107481}.,DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. locus:2204237;,locus:2152642; AT1G30330,AT5G37020 auxin response factor Auxin response factor 12 (OsARF8),Auxin response factor 17,Auxin response factor 6 (OsARF6a),Auxin response factor 25 (OsARF6b),Auxin-responsive protein (Fragment),Os12g0613700 protein Q0J951,Q653U3,Q6H6V4,Q2QM84,A0A0P0WG56,A0A0P0WG97,A0A0P0YCP2 ARFL_ORYSJ,ARFQ_ORYSJ,ARFF_ORYSJ,ARFY_ORYSJ,A0A0P0WG56_ORYSJ,A0A0P0WG97_ORYSJ,A0A0P0YCP2_ORYSJ ARF12 ARF8 Os04g0671900 LOC_Os04g57610 OsJ_16583 OSJNBb0004A17.6,ARF17 Os06g0677800 LOC_Os06g46410 B1153E06.26 P0710B08.20,ARF6 ARF6A Os02g0164900 LOC_Os02g06910 OJ1661_C12.26 OsJ_005343 OSJNBa0023I17.9,ARF25 ARF6B Os12g0613700 LOC_Os12g41950 OsJ_035418,Os04g0671900 OSNPB_040671900,Os12g0613700 OSNPB_120613700 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549}. ENOG411DRDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA soluble inorganic Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase) (PPase) Q0DYB1 IPYR_ORYSJ IPP Os02g0704900 LOC_Os02g47600 OsJ_007809 P0724B10.39 ENOG411DRDH QPT Q9ZU32,A8MS71,F4INA0,A8MRX1 NADC_ARATH,A8MS71_ARATH,F4INA0_ARATH,A8MRX1_ARATH Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]),Nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]),Quinolinate phoshoribosyltransferase DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:16698895}. Embryo defective; Preglobular / Globular-T. Hashimoto-2007 FUNCTION: Involved in the catabolism of quinolinic acid (QA). {ECO:0000250, ECO:0000269|PubMed:16698895, ECO:0000269|PubMed:22268572}.,FUNCTION: Involved in the catabolism of quinolinic acid (QA). {ECO:0000256|PIRNR:PIRNR006250}. MISCELLANEOUS: Accumulation of NAD by over-expression of the bacterial nadC gene in Arabidopsis stimulates plant resistance probably via salicylic acid (SA)-dependent signaling. {ECO:0000305|PubMed:22268572}. PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from quinolinate: step 1/1.,PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from quinolinate: step 1/1. {ECO:0000256|PIRNR:PIRNR006250}. ARA:AT2G01350-MONOMER; R-ATH-196807; 2.4.2.19 37955,35499,30846,37125 Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]),Nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]),Quinolinate phoshoribosyltransferase chloroplast [GO:0009507]; nicotinate-nucleotide diphosphorylase (carboxylating) activity [GO:0004514]; NAD biosynthetic process [GO:0009435]; quinolinate catabolic process [GO:0034213],nicotinate-nucleotide diphosphorylase (carboxylating) activity [GO:0004514]; NAD biosynthetic process [GO:0009435] locus:2038791; AT2G01350 nicotinate-nucleotide pyrophosphorylase carboxylating Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]) Q0IZS0 NADC_ORYSJ Os09g0553600 LOC_Os09g38060 OsJ_30273 FUNCTION: Involved in the catabolism of quinolinic acid (QA). {ECO:0000250}. ENOG411DRDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Inorganic phosphate transporter 1-1 (OsPT1) (OsPht1;1) (H(+)/Pi cotransporter),Inorganic phosphate transporter 1-2 (OsPT2) (OsPht1;2) (H(+)/Pi cotransporter) (OsPT1),Probable inorganic phosphate transporter 1-3 (OsPT3) (OsPht1;3) (H(+)/Pi cotransporter) (OsPT1),Os10g0444600 protein (Fragment) Q8H6H4,Q8GSD9,Q7XDZ7,A0A0P0XUQ9 PHT11_ORYSJ,PHT12_ORYSJ,PHT13_ORYSJ,A0A0P0XUQ9_ORYSJ PHT1-1 PT1 Os03g0150600 LOC_Os03g05620 OsJ_009086,PTH1-2 PT1 PT2 Os03g0150800 LOC_Os03g05640 OsJ_009088,PHT1-3 PT1 PT3 Os10g0444600 LOC_Os10g30770 OsJ_030442,Os10g0444600 OSNPB_100444600 FUNCTION: High-affinity transporter for external inorganic phosphate (By similarity). Required for phosphate acquisition in plant. {ECO:0000250, ECO:0000269|PubMed:18563580}.,FUNCTION: Low-affinity transporter for inorganic phosphate (Pi) (PubMed:18980647). Involved in internal Pi transport from root to shoot (PubMed:18980647, PubMed:20149131). Responsible for most of the PHR2-mediated accumulation of excess shoot Pi under abundant Pi conditions, but not for PHO2-mediated accumulation of excess shoot Pi (PubMed:20149131). Acts as a H(+):phosphate symporter (PubMed:18980647). {ECO:0000269|PubMed:18980647, ECO:0000269|PubMed:20149131}.,FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Plants overexpressing PHT1-1 accumulates almost twice the amount of phosphate in the shoots compared to the wild-type plants. Although related to the sugar transporter family, it does not transport sugars.,MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. ENOG411DRDV Q9LFL2 Q9LFL2_ARATH Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At5g16890) (Uncharacterized protein F2K13_40) 58081 Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At5g16890) (Uncharacterized protein F2K13_40) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2148136; AT5G16890 exostosin family Os01g0811400 protein A0A0P0V9G9 A0A0P0V9G9_ORYSJ Os01g0811400 OSNPB_010811400 ENOG411DRDU SINAT2,SINAT1,SINAT3,SINAT4,SINAT5 Q9M2P4,P93748,Q84JL3,Q9STN8,Q8S3N1,A0A1P8BC00 SINA2_ARATH,SINA1_ARATH,SINA3_ARATH,SINA4_ARATH,SINA5_ARATH,A0A1P8BC00_ARATH E3 ubiquitin-protein ligase SINAT2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT2) (Seven in absentia homolog 2),Putative E3 ubiquitin-protein ligase SINAT1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT1) (Seven in absentia homolog 1),E3 ubiquitin-protein ligase SINAT3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT3) (Seven in absentia homolog 3),E3 ubiquitin-protein ligase SINAT4 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT4) (Seven in absentia homolog 4),E3 ubiquitin-protein ligase SINAT5 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT5) (Seven in absentia homolog 5),E3 ubiquitin-protein ligase (EC 2.3.2.27) DISRUPTION PHENOTYPE: No visible phenotype, may be due to the existence of 4 homologous proteins. {ECO:0000269|PubMed:17873090}. FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates (Probable). Mediates the proteasomal-dependent degradation of ATG6, a component of the autophagosome complex. Requires TRAF1A/MUSE14 and TRAF1B/MUSE13 to target ATG6 for ubiquitination and subsequent regulation of autophagosome assembly (PubMed:28351989). {ECO:0000269|PubMed:28351989, ECO:0000305|PubMed:28351989}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates (Probable). Mediates the proteasomal-dependent degradation of ATG6, a component of the autophagosome complex. Requires TRAF1A/MUSE14 and TRAF1B/MUSE13 to target ATG6 for ubiquitination and subsequent regulation of autophagosome assembly (PubMed:28351989). {ECO:0000269|PubMed:28351989, ECO:0000305|PubMed:28351989}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates. {ECO:0000250|UniProtKB:Q8S3N1}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (Probable). Mediates the ubiquitin-mediated degradation of NAC021/NAC022, a transcription activator that functions downstream of the auxin signals, thereby acting as a down-regulator of auxin signals. Involved in the formation of lateral roots (PubMed:12226665). {ECO:0000269|PubMed:12226665, ECO:0000305|PubMed:12226665}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|RuleBase:RU201113}. R-ATH-5689880;R-ATH-983168; 2.3.2.27 34993,34557,36947,36574,35037,20336 E3 ubiquitin-protein ligase SINAT2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT2) (Seven in absentia homolog 2),Putative E3 ubiquitin-protein ligase SINAT1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT1) (Seven in absentia homolog 1),E3 ubiquitin-protein ligase SINAT3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT3) (Seven in absentia homolog 3),E3 ubiquitin-protein ligase SINAT4 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT4) (Seven in absentia homolog 4),E3 ubiquitin-protein ligase SINAT5 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINAT5) (Seven in absentia homolog 5),E3 ubiquitin-protein ligase (EC 2.3.2.27) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511],mitochondrion [GO:0005739]; nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; metal ion binding [GO:0046872]; multicellular organism development [GO:0007275]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed at low level in the vascular tissue of mature roots. Expressed in lateral roots and in elongation zone of the main root upon stimulation by auxin. Colocalizes with NAC021/NAC022. {ECO:0000269|PubMed:12226665}. locus:2095848;,locus:2064642;,locus:2076810;,locus:2137395;,locus:2154267; AT3G58040,AT2G41980,AT3G61790,AT4G27880,AT5G53360 E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411DRDR GAD3,GAD1,GAD4 Q9ZPS4,Q42521,Q9ZPS3,A0A1P8AZ64 DCE3_ARATH,DCE1_ARATH,DCE4_ARATH,A0A1P8AZ64_ARATH Glutamate decarboxylase 3 (GAD 3) (EC 4.1.1.15),Glutamate decarboxylase 1 (GAD 1) (EC 4.1.1.15),Glutamate decarboxylase 4 (GAD 4) (EC 4.1.1.15),Glutamate decarboxylase (EC 4.1.1.15) DISRUPTION PHENOTYPE: No visible phenotype, but increased glutamate levels and decreased GABA levels in the roots, and loss of GABA accumulation upon heat stress. {ECO:0000269|PubMed:15604684, ECO:0000269|PubMed:18077464}. Low GABA levels in roots-H. Fromm-2004 FUNCTION: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis. {ECO:0000269|PubMed:9700069}. ARA:AT2G02000-MONOMER;,ARA:AT5G17330-MONOMER;,ARA:AT2G02010-MONOMER; 4.1.1.15; 4.1.1.15 56507,57066,56005,62038 Glutamate decarboxylase 3 (GAD 3) (EC 4.1.1.15),Glutamate decarboxylase 1 (GAD 1) (EC 4.1.1.15),Glutamate decarboxylase 4 (GAD 4) (EC 4.1.1.15),Glutamate decarboxylase (EC 4.1.1.15) calmodulin binding [GO:0005516]; glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; glutamate metabolic process [GO:0006536],cytosol [GO:0005829]; calmodulin binding [GO:0005516]; glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; glutamate metabolic process [GO:0006536]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; glutamate metabolic process [GO:0006536],glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; glutamate metabolic process [GO:0006536] TISSUE SPECIFICITY: Expressed at low levels in siliques. {ECO:0000269|PubMed:18077464}.,TISSUE SPECIFICITY: Expressed in roots. Detected at low levels in shoots of young seedlings. Not detected in the root tips or in the central vascular bundle in the elongating region of mature roots. {ECO:0000269|PubMed:15604684, ECO:0000269|PubMed:18077464, ECO:0000269|PubMed:9700069, ECO:0000269|PubMed:9701597}.,TISSUE SPECIFICITY: Expressed in flowers and shoots. Detected at low levels in siliques, stems, leaves and roots. {ECO:0000269|PubMed:18077464}. locus:2041120;,locus:2167240;,locus:2041130; AT2G02000,AT5G17330,AT2G02010 Glutamate decarboxylase Glutamate decarboxylase (EC 4.1.1.15),Os03g0720300 protein (Fragment),Os05g0421750 protein (Fragment) Q84U04,Q6ASV4,A0A0P0W308,A0A0P0WML7 Q84U04_ORYSJ,Q6ASV4_ORYSJ,A0A0P0W308_ORYSJ,A0A0P0WML7_ORYSJ GAD3 GAD LOC_Os03g13300 Os03g0236200 OsJ_10062 OSNPB_030236200,B1377B10.13 LOC_Os03g51080 Os03g0720300 OSNPB_030720300,Os03g0720300 OSNPB_030720300,Os05g0421750 OSNPB_050421750 ENOG411DRDP Q9MAR2,A0A1P8ATX3 Q9MAR2_ARATH,A0A1P8ATX3_ARATH At1g43860 (F28H19.11 protein) (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At1g43860; F28H19.11),Sequence-specific DNA binding transcription factor 42231,38372 At1g43860 (F28H19.11 protein) (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At1g43860; F28H19.11),Sequence-specific DNA binding transcription factor cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; mature ribosome assembly [GO:0042256]; regulation of transcription, DNA-templated [GO:0006355]; rRNA processing [GO:0006364],nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; ribosome biogenesis [GO:0042254] locus:2029152; AT1G43860 Ribosome maturation protein Os08g0107500 protein (Putative Shwachman-Bodian-Diamond syndrome protein) (cDNA clone:001-125-F01, full insert sequence) Q6ZD69 Q6ZD69_ORYSJ Os08g0107500 OsJ_25763 OSNPB_080107500 P0450B04.21 ENOG411DRDZ PME61,PME34,PMEPCRF Q9FK05,Q9M3B0,A0A1P8BGK2,A0A1I9LRM8,A0A1I9LRM9 PME61_ARATH,PME34_ARATH,A0A1P8BGK2_ARATH,A0A1I9LRM8_ARATH,A0A1I9LRM9_ARATH Probable pectinesterase/pectinesterase inhibitor 61 [Includes: Pectinesterase inhibitor 61 (Pectin methylesterase inhibitor 61); Pectinesterase 61 (PE 61) (EC 3.1.1.11) (AtPMEpcrF) (Pectin methylesterase 61) (AtPME61)],Probable pectinesterase/pectinesterase inhibitor 34 [Includes: Pectinesterase inhibitor 34 (Pectin methylesterase inhibitor 34); Pectinesterase 34 (PE 34) (EC 3.1.1.11) (Pectin methylesterase 34) (AtPME34)],Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589, ECO:0000256|SAAS:SAAS00560367}. ARA:AT5G53370-MONOMER;,ARA:AT3G49220-MONOMER; 3.1.1.11 64241,65307,68533,70664,46253 Probable pectinesterase/pectinesterase inhibitor 61 [Includes: Pectinesterase inhibitor 61 (Pectin methylesterase inhibitor 61); Pectinesterase 61 (PE 61) (EC 3.1.1.11) (AtPMEpcrF) (Pectin methylesterase 61) (AtPME61)],Probable pectinesterase/pectinesterase inhibitor 34 [Includes: Pectinesterase inhibitor 34 (Pectin methylesterase inhibitor 34); Pectinesterase 34 (PE 34) (EC 3.1.1.11) (Pectin methylesterase 34) (AtPME34)],Pectinesterase (EC 3.1.1.11) cell periphery [GO:0071944]; cell wall [GO:0005618]; integral component of membrane [GO:0016021]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; integral component of membrane [GO:0016021]; aspartyl esterase activity [GO:0045330]; enzyme inhibitor activity [GO:0004857]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques, floral stems and rosettes leaves. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:9767082}.,TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2154277;,locus:2082951; AT5G53370,AT3G49220 pectinesterase Pectinesterase (EC 3.1.1.11),Os01g0234300 protein Q6K8B0,A0A0P0V0X2,A0A0P0V0P1 Q6K8B0_ORYSJ,A0A0P0V0X2_ORYSJ,A0A0P0V0P1_ORYSJ Os02g0288100 OJ1756_H07.27 OSNPB_020288100,Os01g0234499 OSNPB_010234499,Os01g0234300 OSNPB_010234300 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. ENOG411DRDX Q8L771,A0A1P8B123,A8MSG0 Q8L771_ARATH,A0A1P8B123_ARATH,A8MSG0_ARATH D-tagatose-1,6-bisphosphate aldolase subunit 25914,29095,25786 D-tagatose-1,6-bisphosphate aldolase subunit locus:1005716637; AT2G36895 NA Expressed protein (Os03g0152600 protein) Q10RN3 Q10RN3_ORYSJ LOC_Os03g05800 Os03g0152600 OSNPB_030152600 ENOG411DRDY HSFA5 Q94BZ5 HSFA5_ARATH Heat stress transcription factor A-5 (AtHsfA5) (AtHsf-12) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 52355 Heat stress transcription factor A-5 (AtHsfA5) (AtHsf-12) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2129276; AT4G13980 Heat stress transcription factor Heat stress transcription factor A-5 (Heat stress transcription factor 6) (OsHsf-06) Q6K6S5 HSFA5_ORYSJ HSFA5 HSF06 Os02g0496100 LOC_Os02g29340 P0040H05.33 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DRD6 ATG16 Q6NNP0 ATG16_ARATH Autophagy-related protein 16 FUNCTION: May play a role in autophagy. {ECO:0000250|UniProtKB:Q676U5}. R-ATH-1632852; 56427 Autophagy-related protein 16 autophagosome membrane [GO:0000421]; autophagosome assembly [GO:0000045]; protein transport [GO:0015031] locus:2157762; AT5G50230 Autophagy protein 16 (ATG16) Os03g0746600 protein (Transducin family protein, putative, expressed) Q10CZ9 Q10CZ9_ORYSJ Os03g0746600 LOC_Os03g53510 Os03g0746600 OSNPB_030746600 ENOG411DRD7 BSU1,BSL1,BSL3,BSL2 Q9LR78,Q8L7U5,Q9SHS7,Q9SJF0,A0A1P8AQ82,F4IFQ0,F4HW26 BSU1_ARATH,BSL1_ARATH,BSL3_ARATH,BSL2_ARATH,A0A1P8AQ82_ARATH,F4IFQ0_ARATH,F4HW26_ARATH Serine/threonine-protein phosphatase BSU1 (EC 3.1.3.16) (Bri1 suppressor protein 1),Serine/threonine-protein phosphatase BSL1 (EC 3.1.3.16) (BSU1-like protein 1),Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16) (BSU1-like protein 3),Serine/threonine-protein phosphatase BSL2 (EC 3.1.3.16) (BSU1-like protein 2),Serine/threonine-protein phosphatase (EC 3.1.3.16) FUNCTION: Phosphatase that acts as a positive regulator of brassinosteroid (BR) signaling (PubMed:14977918, PubMed:21855796). Dephosphorylates BES1, a transcription factor that regulates the expression of BR-response genes, thereby playing an important role in the regulation of response to BRs (PubMed:14977918). Inactivates the negative regulator of BR signaling ASK7/BIN2 by dephosphorylation at 'Tyr-200' (PubMed:21855796). {ECO:0000269|PubMed:14977918, ECO:0000269|PubMed:21855796}.,FUNCTION: Phosphatase involved in elongation process, probably by acting as a regulator of brassinolide signaling. {ECO:0000269|PubMed:14977918}. 3.1.3.16 87789,96146,107523,108580,87149,107024,108081 Serine/threonine-protein phosphatase BSU1 (EC 3.1.3.16) (Bri1 suppressor protein 1),Serine/threonine-protein phosphatase BSL1 (EC 3.1.3.16) (BSU1-like protein 1),Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16) (BSU1-like protein 3),Serine/threonine-protein phosphatase BSL2 (EC 3.1.3.16) (BSU1-like protein 2),Serine/threonine-protein phosphatase (EC 3.1.3.16) nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; brassinosteroid mediated signaling pathway [GO:0009742]; positive regulation of brassinosteroid mediated signaling pathway [GO:1900459]; regulation of protein localization [GO:0032880],nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; brassinosteroid mediated signaling pathway [GO:0009742],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; brassinosteroid mediated signaling pathway [GO:0009742],metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; brassinosteroid mediated signaling pathway [GO:0009742],phosphoprotein phosphatase activity [GO:0004721]; brassinosteroid mediated signaling pathway [GO:0009742] TISSUE SPECIFICITY: Mainly expressed in young, elongating tissues. In young seedlings, it is expressed at the base of the hypocotyl, at the tip and most peripheral cell layers of cotyledons, and in the vascular cylinder of roots, particularly in the elongation zone and at the point of emergence of lateral roots. In mature plants, it is still present in the root vasculature, but almost completely absent in fully expanded stems and leaves. In flowers, it is mainly expressed in sepal veins, anther filaments, and in the style, suggesting that BSU1 is expressed in actively growing regions and apparently enriched in vascular tissues. {ECO:0000269|PubMed:14977918}.,TISSUE SPECIFICITY: Expressed in mature cauline leaves and at the tip of influorescence, including flowers. Expressed at lower level in young tissues relative to older ones. {ECO:0000269|PubMed:14977918}.,TISSUE SPECIFICITY: Expressed throughout the plant, with a higher level in younger parts. {ECO:0000269|PubMed:14977918}. locus:2825042;,locus:2139399;,locus:2059610;,locus:2201776; AT1G03445,AT4G03080,AT2G27210,AT1G08420 serine threonine-protein phosphatase Serine/threonine-protein phosphatase BSL1 homolog (EC 3.1.3.16) (BSU1-like protein 1 homolog),Serine/threonine-protein phosphatase BSL2 homolog (EC 3.1.3.16) (BSU1-like protein 2 homolog),Serine/threonine-protein phosphatase (EC 3.1.3.16) (Fragment),Os12g0617900 protein (Fragment) Q60EX6,Q2QM47,A0A0P0YD65,A0A0N7KHQ6,A0A0P0YDT6 BSL1_ORYSJ,BSL2_ORYSJ,A0A0P0YD65_ORYSJ,A0A0N7KHQ6_ORYSJ,A0A0P0YDT6_ORYSJ BSL1 Os05g0144400 LOC_Os05g05240 OJ1607_F09.10,BSL2 Os12g0617900 LOC_Os12g42310,Os12g0617900 OSNPB_120617900,Os03g0646900 OSNPB_030646900 ENOG411DRD4 P0CB23 Y4862_ARATH Uncharacterized protein At4g38062 122709 Uncharacterized protein At4g38062 AT4G38062 NA Os03g0691500 protein B9FAP8 B9FAP8_ORYSJ Os03g0691500 OsJ_12177 OSNPB_030691500 ENOG411DRD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os02g0671200 protein (Fragment),Os02g0714801 protein A0A0N7KFV0,A0A0P0VNX7 A0A0N7KFV0_ORYSJ,A0A0P0VNX7_ORYSJ Os02g0671200 OSNPB_020671200,Os02g0714801 OSNPB_020714801 ENOG411DRD2 T22E16.90,F12A12.90 Q9M2T6,Q9SNC1,A0A1P8BDM2,A0A1P8BDM0,F4KH29,F4KH28 Q9M2T6_ARATH,Q9SNC1_ARATH,A0A1P8BDM2_ARATH,A0A1P8BDM0_ARATH,F4KH29_ARATH,F4KH28_ARATH Beta-1, 3-glucanase-like protein (O-Glycosyl hydrolases family 17 protein) (Putative beta-1,3-glucanase),Glucosidase-like protein (Glycosyl hydrolase superfamily protein),O-Glycosyl hydrolases family 17 protein ARA:AT3G55430-MONOMER;,ARA:AT3G46570-MONOMER; 48442,39190,41326,35572,50105,50766 Beta-1, 3-glucanase-like protein (O-Glycosyl hydrolases family 17 protein) (Putative beta-1,3-glucanase),Glucosidase-like protein (Glycosyl hydrolase superfamily protein),O-Glycosyl hydrolases family 17 protein anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; plasmodesma [GO:0009506]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975],anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2100011;,locus:2075205;,locus:1009023441; AT3G55430,AT3G46570,AT5G24318 glucan endo-1-3-beta-glucosidase Glucan endo-1,3-beta-glucosidase (Ec 3.2.1.39) ((1-3)-beta-glucan endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3-endoglucanase) (Glucan endo-1,3-beta-glucosidase, putative, expressed) (Os11g0704600 protein) (cDNA clone:001-025-B11, full insert sequence),Glucan endo-1,3-beta-glucosidase (Ec 3.2.1.39) ((1-3)-beta-glucan endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3-endoglucanase) (Glucan endo-1,3-beta-glucosidase, putative, expressed) (Os11g0704600 protein) (cDNA clone:J023135K21, full insert sequence),Os04g0681950 protein (Fragment) Q53MA7,Q53MA8,A0A0P0WGE4 Q53MA7_ORYSJ,Q53MA8_ORYSJ,A0A0P0WGE4_ORYSJ Os11g0704600 LOC_Os11g47820 Os11g0704600 OSNPB_110704600,Os11g0704600 LOC_Os11g47820 OSNPB_110704600,Os04g0681950 OSNPB_040681950 ENOG411DRD3 LIP1P Q8LEE8 LISC_ARATH Lipoyl synthase, chloroplastic (EC 2.8.1.8) (Lipoate synthase) (LS) (Lip-syn) (Lipoate synthase, plastidial) (LIP1p) (Lipoic acid synthase) FUNCTION: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. {ECO:0000255|HAMAP-Rule:MF_03129, ECO:0000269|PubMed:12062419}. PATHWAY: Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 2/2. {ECO:0000255|HAMAP-Rule:MF_03129}. R-ATH-389661; 2.8.1.8 43622 Lipoyl synthase, chloroplastic (EC 2.8.1.8) (Lipoate synthase) (LS) (Lip-syn) (Lipoate synthase, plastidial) (LIP1p) (Lipoic acid synthase) chloroplast [GO:0009507]; 4 iron, 4 sulfur cluster binding [GO:0051539]; lipoate synthase activity [GO:0016992]; metal ion binding [GO:0046872]; lipoate biosynthetic process [GO:0009107]; protein lipoylation [GO:0009249] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:12062419}. locus:505006586; AT5G08415 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes thereby converting the octanoylated domains into lipoylated derivatives (By similarity) Lipoyl synthase 1, chloroplastic (EC 2.8.1.8) (Lipoate synthase 1) (LS 1) (Lip-syn 1) (Lipoate synthase, plastidial 1) (LIP1p 1) (Lipoic acid synthase 1),Lipoyl synthase 2, chloroplastic (EC 2.8.1.8) (Lipoate synthase 2) (LS 2) (Lip-syn 2) (Lipoate synthase, plastidial 2) (LIP1p 2) (Lipoic acid synthase 2) Q5ZAQ2,Q6L534 LISC1_ORYSJ,LISC2_ORYSJ LIP1P-1 Os01g0769100 LOC_Os01g56310 B1143G03.28 OsJ_03597 P0665A11.4,LIP1P-2 Os05g0511500 LOC_Os05g43576 B1155G07.1 OJ1005_B11.11 OsJ_19166 FUNCTION: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. {ECO:0000255|HAMAP-Rule:MF_03129}. ENOG411DRD0 Q93W95 PMTD_ARATH Probable methyltransferase PMT13 (EC 2.1.1.-) 2.1.1.- 67555 Probable methyltransferase PMT13 (EC 2.1.1.-) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; cell wall pectin metabolic process [GO:0052546] locus:2117733; AT4G00740 Methyltransferase OSJNBb0032E06.12 protein (Os04g0569400 protein) Q7XRW8 Q7XRW8_ORYSJ OSJNBb0032E06.12 Os04g0569400 OSNPB_040569400 ENOG411DRD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0680500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6EPN7 Q6EPN7_ORYSJ Os02g0680500 Os02g0680500 OsJ_07931 OSNPB_020680500 P0663F07.26 ENOG411DRD8 T18N14.90 Q9SCT7 Q9SCT7_ARATH D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein (Uncharacterized protein T18N14.90) 53230 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein (Uncharacterized protein T18N14.90) integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246] locus:2098237; AT3G51710 PAN domain-containing protein Os01g0825600 protein Q94D96 Q94D96_ORYSJ Os01g0825600 OsJ_03921 OSNPB_010825600 P0439E11.16 ENOG411DRD9 WRI1 Q6X5Y6,A0A1I9LLF6,A8MS57 WRI1_ARATH,A0A1I9LLF6_ARATH,A8MS57_ARATH Ethylene-responsive transcription factor WRI1 (Protein ACTIVATOR OF SPORAMIN::LUC 1) (Protein WRINKLED 1),Integrase-type DNA-binding superfamily protein ADH activity is stronger in early-maturing mutant embryos than in wildtype.,Both glucokinase (GK) and fructokinase (FK) activities are completely absent from mutant embryos throughout the maturation process.,The pattern of G6PDH activity is not altered in the mutant compared to wildtype; only a slight delay in increase of AGPase activity is detected.,The wri1 has seed-specific phenotype characterized by the wrinkledness of the seed and a strong reduction in the accumulation of seed oil. No striking differences between the wild-type and mutant plants were observed in particular with respect to the number of siliques or seeds a factor that could affect seed filling. Furthermore the number of siliques per plant as well as the number of seeds per silique were not altered in the wri1 mutants. Early morphogenesis of the embryo as observed by light microscopy was indistinguishable in the mutants and the wild type however during the seed-filling stage triacylglycerols accumulated at a much lower rate in the mutant and the final amount of triacylglycerols in mature wri1 mutant seeds was reduced by approximately 80%. The fatty acid composition of triacylglycerols extracted from mature wild-type and homozygous wri1 mutant seeds were different. There were only subtle differences in the time courses of protein accumulation during seed development between the mutants and the wild type. It appears that young mutant seeds contain more protein whereas mature mutant seeds contain slightly less than wild-type seeds. Furthermore the amounts of soluble sugars including Suc Glc and Fru were elevated throughout development of wri1 mutant seeds. Mature mutant seeds contained approximately twice as much Suc. However developing homozygous wri1 seeds were impaired in the incorporation of sucrose and glucose into triacylglycerols; pyruvate and acetate were incorporated at an increased rate. Because the activities of several glycolytic enzymes in particular hexokinase and pyrophosphate-dependent phosphofructokinase are reduced in developing homozygous wri1 seeds it is suggested that WRI1is involved in the developmental regulation of carbohydrate metabolism during seed filling. Embryo defective; Cotyledon-C. Benning-2007 FUNCTION: May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional activator involved in the activation of a subset of sugar-responsive genes and the control of carbon flow from sucrose import to oil accumulation in developing seeds. Binds to the GCC-box pathogenesis-related promoter element. Promotes sugar uptake and seed oil accumulation by glycolysis. Required for embryo development, seed germination and, indirectly, for seedling establishment. Negative regulator of the ABA-mediated germination inhibition. {ECO:0000250, ECO:0000269|PubMed:12084821, ECO:0000269|PubMed:15500472, ECO:0000269|PubMed:15753106, ECO:0000269|PubMed:16553903, ECO:0000269|PubMed:16632590, ECO:0000269|PubMed:9733529}. 48436,41385,32754 Ethylene-responsive transcription factor WRI1 (Protein ACTIVATOR OF SPORAMIN::LUC 1) (Protein WRINKLED 1),Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; lipid biosynthetic process [GO:0008610]; lipid metabolic process [GO:0006629]; multicellular organism development [GO:0007275]; positive regulation of cutin biosynthetic process [GO:1901959]; regulation of carbohydrate metabolic process [GO:0006109]; regulation of glycolytic process [GO:0006110]; response to sucrose [GO:0009744]; transcription, DNA-templated [GO:0006351]; triglyceride biosynthetic process [GO:0019432],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in siliques, especially in seeds. Also detected in roots and flowers, and, to a lower extent, in leaves stems and seedlings. {ECO:0000269|PubMed:15500472, ECO:0000269|PubMed:15753106}. locus:2096144; AT3G54320 transcription factor Os11g0129700 protein,Os12g0126300 protein C7J9D0,A0A0P0Y6G4 C7J9D0_ORYSJ,A0A0P0Y6G4_ORYSJ Os11g0129700 OSNPB_110129700,Os12g0126300 OSNPB_120126300 ENOG411EBNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0278200 protein,Os02g0277700 protein (Fragment) A3A5I8,A0A0P0VHL9 A3A5I8_ORYSJ,A0A0P0VHL9_ORYSJ Os02g0278200 OsJ_06241 OSNPB_020278200,Os02g0277700 OSNPB_020277700 ENOG411EBNV AGL103 Q9LSB2 AG103_ARATH Agamous-like MADS-box protein AGL103 FUNCTION: Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. 43552 Agamous-like MADS-box protein AGL103 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2093979; AT3G18650 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EBNT O22779 TRL13_ARATH Thioredoxin-like 1-3, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 3) (AtACHT3) (Lilium-type thioredoxin 1-3) FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 30680 Thioredoxin-like 1-3, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 3) (AtACHT3) (Lilium-type thioredoxin 1-3) chloroplast [GO:0009507]; cell redox homeostasis [GO:0045454]; oxidation-reduction process [GO:0055114] locus:2051048; AT2G33270 atypical cys his rich thioredoxin 3 NA NA NA NA NA NA NA ENOG411ED4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamine synthetase beta-Grasp domain NA NA NA NA NA NA NA ENOG411EIQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endoribonuclease L-PSP NA NA NA NA NA NA NA ENOG411EIQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Floricaula / Leafy protein NA NA NA NA NA NA NA ENOG411EIQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQW A0A1P8B9K5 A0A1P8B9K5_ARATH Transmembrane protein 9640 Transmembrane protein integral component of membrane [GO:0016021] NA NA NA NA NA NA NA NA ENOG411EIQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0586600 protein Q0JAN7 Q0JAN7_ORYSJ Os04g0586600 Os04g0586600 OSNPB_040586600 ENOG411EIQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0539000 protein Q651F1 Q651F1_ORYSJ B1274F11.5 Os09g0539000 OSNPB_090539000 ENOG411EIQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitin recognition protein NA NA NA NA NA NA NA ENOG411EIQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: enkurin TRPC channel interacting protein NA NA NA NA NA NA NA ENOG411EIQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Lipase family protein (Os12g0614200 protein),Os12g0614100 protein,Os12g0614500 protein Q2QM81,A0A0P0YCI2,A0A0P0YC44 Q2QM81_ORYSJ,A0A0P0YCI2_ORYSJ,A0A0P0YC44_ORYSJ Os12g0614200 LOC_Os12g41980 OsJ_36864 OSNPB_120614200,Os12g0614100 OSNPB_120614100,Os12g0614500 OSNPB_120614500 ENOG411EIQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0586600 protein Q8H2Y1 Q8H2Y1_ORYSJ OJ1113_E01.110 Os07g0586600 OSNPB_070586600 ENOG411EIQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EIQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0352500 protein A0A0P0WL65 A0A0P0WL65_ORYSJ Os05g0352500 OSNPB_050352500 ENOG411EIQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EIQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os01g0942000 protein,Os01g0942100 protein Q8S9P7,A0A0P0VCV0 Q8S9P7_ORYSJ,A0A0P0VCV0_ORYSJ P0432C03.29 Os01g0942000 OSNPB_010942000,Os01g0942100 OSNPB_010942100 ENOG411E7YW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor Os07g0124300 protein,Os03g0770000 protein Q7XIZ3,A0A0N7KI44 Q7XIZ3_ORYSJ,A0A0N7KI44_ORYSJ OJ1007_H09.109 Os07g0124300 P0474G09.109 OSNPB_070124300,Os03g0770000 OSNPB_030770000 ENOG411E7YU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0533700 protein Q6EPY4 Q6EPY4_ORYSJ Os02g0533700 B1136H02.5 OSNPB_020533700 P0605D08.38 ENOG411E7YT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7YS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0811650 protein (Fragment),Os02g0193933 protein (Fragment),Os07g0661450 protein (Fragment),Os07g0595750 protein (Fragment),Os08g0114150 protein,Os07g0685600 protein (Fragment),Os02g0158701 protein (Fragment),Os02g0808601 protein (Fragment),Os02g0811501 protein (Fragment),Os02g0159850 protein (Fragment) A0A0P0VR20,A0A0N7KEV0,A0A0P0X9T0,A0A0P0X8H3,A0A0N7KP63,A0A0P0XAB5,A0A0P0VEZ9,A0A0P0VR81,A0A0N7KGB1,A0A0P0VF10 A0A0P0VR20_ORYSJ,A0A0N7KEV0_ORYSJ,A0A0P0X9T0_ORYSJ,A0A0P0X8H3_ORYSJ,A0A0N7KP63_ORYSJ,A0A0P0XAB5_ORYSJ,A0A0P0VEZ9_ORYSJ,A0A0P0VR81_ORYSJ,A0A0N7KGB1_ORYSJ,A0A0P0VF10_ORYSJ Os02g0811650 OSNPB_020811650,Os02g0193933 OSNPB_020193933,Os07g0661450 OSNPB_070661450,Os07g0595750 OSNPB_070595750,Os08g0114150 OSNPB_080114150,Os07g0685600 OSNPB_070685600,Os02g0158701 OSNPB_020158701,Os02g0808601 OSNPB_020808601,Os02g0811501 OSNPB_020811501,Os02g0159850 OSNPB_020159850 ENOG411E7YR Q9M095 RC23_ARATH UPF0057 membrane protein At4g30650 7906 UPF0057 membrane protein At4g30650 integral component of membrane [GO:0016021]; defense response to fungus [GO:0050832] locus:2118741; AT4G30650 Pfam:UPF0057 NA NA NA NA NA NA NA ENOG411E7YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0594500 protein (cDNA clone:J023019C07, full insert sequence) Q8L4C6 Q8L4C6_ORYSJ Os01g0594500 Os01g0594500 B1103C09.4 OsJ_02448 OSNPB_010594500 P0451D05.17 ENOG411E7YZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7YY ATL47 Q8GW38 ATL47_ARATH RING-H2 finger protein ATL47 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL47) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 40765 RING-H2 finger protein ATL47 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL47) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2199902; AT1G23980 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E7YX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mpv17 / PMP22 family NA NA NA NA NA NA NA ENOG411E7YG SKIP34 Q8GWU7 SKI34_ARATH Protein SKIP34 (SKP1-interacting partner 34) 11222 Protein SKIP34 (SKP1-interacting partner 34) locus:1005716821; AT5G65495 NA NA NA NA NA NA NA NA ENOG411E7YF EFL1 O80877 EF4L1_ARATH Protein ELF4-LIKE 1 FUNCTION: Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. {ECO:0000269|PubMed:20357892}. 14080 Protein ELF4-LIKE 1 nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; positive regulation of circadian rhythm [GO:0042753]; rhythmic process [GO:0048511] locus:2045673; AT2G29950 Protein of unknown function (DUF1313) NA NA NA NA NA NA NA ENOG411E7YE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0143900 protein Q5ZBM5 Q5ZBM5_ORYSJ Os01g0143900 OsJ_00336 OSNPB_010143900 P0019D06.40 P0024G09.28 ENOG411E7YD O64482 O64482_ARATH Expressed protein (Uncharacterized protein At2g19180/T20K24.20) 20096 Expressed protein (Uncharacterized protein At2g19180/T20K24.20) locus:2059073; AT2G19180 NA NA NA NA NA NA NA NA ENOG411E7YC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0444500 protein Q6Z8Q3 Q6Z8Q3_ORYSJ Os08g0444500 Os08g0444500 OSNPB_080444500 P0479C12.4 P0708B04.29 ENOG411E7YB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mannosyltransferase putative NA NA NA NA NA NA NA ENOG411E7YA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0206201 protein A0A0N7KGS9 A0A0N7KGS9_ORYSJ Os03g0206201 OSNPB_030206201 ENOG411E7YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldolase_II NA NA NA NA NA NA NA ENOG411E7YM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HCaRG protein NA NA NA NA NA NA NA ENOG411E7YK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0142100 protein Q75KL9 Q75KL9_ORYSJ Os05g0142100 Os05g0142100 OJ1264_A04.8 OSNPB_050142100 ENOG411E7YJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0910500 protein Q8S0B4 Q8S0B4_ORYSJ Os01g0910500 Os01g0910500 OsJ_04496 OSNPB_010910500 P0456E05.36 P0470A12.4 ENOG411E7YI MFO20.6 Q1PF47,Q9ZQE0,Q9ZU64,Q9FJV4,Q9SZH7 Q1PF47_ARATH,Q9ZQE0_ARATH,Q9ZU64_ARATH,Q9FJV4_ARATH,Q9SZH7_ARATH C2H2-like zinc finger protein (Zinc finger family protein),C2H2-like zinc finger protein (Putative C2H2-type zinc finger protein) (Uncharacterized protein At2g15740),C2H2-like zinc finger protein (Putative C2H2-type zinc finger protein) (Uncharacterized protein At2g18490),C2H2 and C2HC zinc fingers superfamily protein (C2H2-type zinc finger protein-like),C2H2-like zinc finger protein (Uncharacterized protein At4g26030) (Uncharacterized protein F20B18.140) 35077,38003,29424,35295,25773 C2H2-like zinc finger protein (Zinc finger family protein),C2H2-like zinc finger protein (Putative C2H2-type zinc finger protein) (Uncharacterized protein At2g15740),C2H2-like zinc finger protein (Putative C2H2-type zinc finger protein) (Uncharacterized protein At2g18490),C2H2 and C2HC zinc fingers superfamily protein (C2H2-type zinc finger protein-like),C2H2-like zinc finger protein (Uncharacterized protein At4g26030) (Uncharacterized protein F20B18.140) nucleic acid binding [GO:0003676],nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; root radial pattern formation [GO:0090057] locus:2053598;,locus:2046318;,locus:2163857;,locus:2120795; AT2G15740,AT2G18490,AT5G42640,AT4G26030 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E7YH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3317) Os04g0518650 protein (Fragment) C7J1R7 C7J1R7_ORYSJ Os04g0518650 Os04g0518650 OSNPB_040518650 ENOG411E7Y7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET domain NA NA NA NA NA NA NA ENOG411E7Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7Y5 MRG7.11 Q9FK55,B3H764 Q9FK55_ARATH,B3H764_ARATH Emb|CAB87627.1 (Methyltransferase-related protein) (Uncharacterized protein At5g18150) (Uncharacterized protein At5g18150/MRG7_11),Methyltransferase-like protein 9034,9437 Emb|CAB87627.1 (Methyltransferase-related protein) (Uncharacterized protein At5g18150) (Uncharacterized protein At5g18150/MRG7_11),Methyltransferase-like protein methyltransferase activity [GO:0008168] locus:2172384;,locus:4515103566; AT5G18150,AT5G14602 Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411E7Y4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0433650 protein,Os09g0280900 protein (Os09g0280972 protein) (Os09g0281033 protein) (Os09g0281166 protein) Q69PI1,A0A0P0XJY9 Q69PI1_ORYSJ,A0A0P0XJY9_ORYSJ OJ1081_G10.12 Os09g0433650 OSNPB_090433650,Os09g0281033 Os09g0280900 Os09g0280972 Os09g0281166 OSNPB_090280900 OSNPB_090280972 OSNPB_090281033 OSNPB_090281166 ENOG411E7Y3 Q67Z64 Q67Z64_ARATH At5g16160 (Uncharacterized protein At5g16160) 15355 At5g16160 (Uncharacterized protein At5g16160) locus:2181432; AT5G16160 NA Os01g0689600 protein (cDNA, clone: J065167D05, full insert sequence) B7F8U2 B7F8U2_ORYSJ Os01g0689600 OsJ_03070 OSNPB_010689600 ENOG411E7Y2 VQ25 Q9M2P8 VQ25_ARATH VQ motif-containing protein 25 (AtVQ25) FUNCTION: May function as negative regulator of plant defense. {ECO:0000305|PubMed:22535423}. MISCELLANEOUS: Plants over-expressing VQ25 display enhanced disease symptoms after infection by the bacterial pathogen P.syringae. {ECO:0000269|PubMed:22535423}. 19516 VQ motif-containing protein 25 (AtVQ25) nucleus [GO:0005634]; defense response [GO:0006952] locus:2095783; AT3G58000 VQ motif-containing protein Os04g0665900 protein B9FD64 B9FD64_ORYSJ Os04g0665900 OsJ_16536 OSNPB_040665900 ENOG411E7Y1 O49389 O49389_ARATH AT4g32020/F10N7_170 (Serine/arginine repetitive matrix-like protein) (Uncharacterized protein AT4g32020) (Uncharacterized protein F10N7.170) 19592 AT4g32020/F10N7_170 (Serine/arginine repetitive matrix-like protein) (Uncharacterized protein AT4g32020) (Uncharacterized protein F10N7.170) locus:2116602; AT4G32020 NA NA NA NA NA NA NA NA ENOG411E7Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0358900 protein A0A0P0WLI6 A0A0P0WLI6_ORYSJ Os05g0358900 OSNPB_050358900 ENOG411E7Y9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E7Y8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12-oxophytodienoate reductase NA NA NA NA NA NA NA ENOG411EAV3 HIPL2 Q94F08 HIPL2_ARATH HIPL2 protein 75617 HIPL2 protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; oxidoreductase activity [GO:0016491] locus:2172224; AT5G62630 Glucose / Sorbosone dehydrogenase NA NA NA NA NA NA NA ENOG411EAV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKI1 accD P56765 ACCD_ARATH Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 6.4.1.2) FUNCTION: Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA. {ECO:0000255|HAMAP-Rule:MF_01395}. PATHWAY: Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1. {ECO:0000255|HAMAP-Rule:MF_01395}. ARA:ATCG00500-MONOMER; 6.4.1.2 55636 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 6.4.1.2) acetyl-CoA carboxylase complex [GO:0009317]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295] TISSUE SPECIFICITY: Accumulates in fatty acids synthesizing tissues such as embryos, expanding leaves, flower buds, flowers, and developing siliques. {ECO:0000269|PubMed:10759501}. ATCG00500 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA (By similarity) NA NA NA NA NA NA NA ENOG411EAVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKI5 PU1 Q8GTR4 PULA1_ARATH Pullulanase 1, chloroplastic (AtPU1) (EC 3.2.1.142) (Protein LIMIT DEXTRINASE) (AtLDA) DISRUPTION PHENOTYPE: No effect on the starch level in leaves and slight increase of water-soluble polysaccharides. No alteration of the amylase-to-amylopectin ratio. ISA3 is able to fully compensate for the loss of PU1. {ECO:0000269|PubMed:15849301}. 22% reduction in maltotriose production.,35% reduction in maltose production.,Grows at the same rate as wildtype.,Reduced beta-limit dextrin debranching activity.,Modification of amylopectin structure.,72% reduction in maltose production.,96% reduction in maltotriose production.,Delayed growth compared to wildtype (stronger phenotype than in single mutant atisa3-2).,Increased &,Increased frequency of chains of dp3 and to a lesser degree of dp4 and dp5. Decreased abundance of chains between dp9 and dp16.,Marked reduction in starch breakdown (48.3% compared to wildtype degradation). Even after 260h in extended night the youngest leaves still stain darkly for starch with iodine solution.,Same phenotype as atlda-2.,Modification of amylopectine structure. Strong increase of number of small chain (degree of polymerisation between 5 and 9) and decrease in number of longer chains (11-17 degree of polymerisation).,Strong increase in water soluble polysaccharides (WSPs) content.,Strong reduction in starch accumulation in double mutant. FUNCTION: Involved in starch degradation and also probably in the trimming of pre-amylopectin chains during starch synthesis. {ECO:0000269|PubMed:16495218, ECO:0000269|PubMed:18815382, ECO:0000269|PubMed:19074683}. MISCELLANEOUS: Double mutant shows that PU1 and ISA3 have redundant function for starch degradation. The involvement of PU1 in amylopectin synthesis is infered from the phenotype of double mutant in PU1 and ISA2. PATHWAY: Glycan biosynthesis; starch biosynthesis.; PATHWAY: Glycan degradation; starch degradation. ARA:AT5G04360-MONOMER; 3.2.1.142 107067 Pullulanase 1, chloroplastic (AtPU1) (EC 3.2.1.142) (Protein LIMIT DEXTRINASE) (AtLDA) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; limit dextrinase activity [GO:0010303]; pullulanase activity [GO:0051060]; starch biosynthetic process [GO:0019252]; starch catabolic process [GO:0005983] locus:2179919; AT5G04360 pullulanase Os04g0164900 protein (Fragment) A0A0P0W7K6 A0A0P0W7K6_ORYSJ Os04g0164900 OSNPB_040164900 ENOG411EKI4 ISA2 Q8L735 ISOA2_ARATH Isoamylase 2, chloroplastic (AtISA2) (Protein DEBRANCHING ENZYME 1) DISRUPTION PHENOTYPE: Strong reduction of the starch level in leaves, but 50-fold increase of water-soluble polysaccharides. No alteration of the amylase-to-amylopectin ratio. {ECO:0000269|PubMed:15743447, ECO:0000269|PubMed:15849301}. Modification of amylopectine structure. Strong increase of number of small chain (degree of polymerisation between 5 and 9) and decrease in number of longer chains (11-17 degree of polymerisation).,No significant alteration of amylase-to-amylopectine ratio.,Reduced starch in leaves,Strong increase in water soluble polysaccharides (WSPs) content.,No visible phenotype.,Strong reduction in maltose accumulation compared to the be2-1 be3-2 double mutant.,Accumulates reduced amounts of starch relative to wildtype but large amounts of soluble glucan.,No reduction in maltose and matotriose production.,Strong reduction in starch accumulation in double mutant.,Displays the same profile of polymerization (DP) as the corresponding be2 or be3 mutant.,Increased starch phosphorylase activity compared to wild type.,No starch branching enzyme activity detected.,DP 6-7 and DP 5-9 chains are slightly decreased whereas DP 10-16 chains are slightly increased (DP degree of polymerization).,Starch granules are slightly larger than those of wild type.,Absence of starch and accumulation of very high levels of water-soluble glucans.,Contains 90% of α-maltose and 10% of β-maltose.,Low growth and flowering rates.,Pale colour.,Reduced size of the mature plant. Thirty days after seed germination the fresh weight of this mutant is one-fifth of that of wild type.,The levels of sucrose fructose glucose 6-phosphate and glucose 1-phosphate are not significantly deviating from those of wild type or the single mutants.,The maltose accumulates mostly in the cytosol (~80%).,The mutant is still able to produce siliques and viable seeds.,Water-soluble glycans are composed of very short malto-oligosaccharides made of 80% maltose 14% maltotriose and 6% glucose.,Wilting of the inflorescence. Decreased starch levels-S. Zeeman-2006 FUNCTION: Involved in the trimming of pre-amylopectin chains. Accelerates the crystallization of nascent amylopectin molecules during starch synthesis. ISA1 and ISA2 work exclusively together as a multimeric holoenzyme. ISA1-ISA2 removes preferentially branches that are very close to other branches. {ECO:0000269|PubMed:15743447, ECO:0000269|PubMed:18815382, ECO:0000269|PubMed:19074683}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:GQT-2133-MONOMER;MetaCyc:AT1G03310-MONOMER; 3.2.1.68; 98884 Isoamylase 2, chloroplastic (AtISA2) (Protein DEBRANCHING ENZYME 1) chloroplast [GO:0009507]; isoamylase activity [GO:0019156]; amylopectin biosynthetic process [GO:0010021]; starch biosynthetic process [GO:0019252] locus:2014500; AT1G03310 isoamylase NA NA NA NA NA NA NA ENOG411EKIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM OSJNBb0072N21.7 protein (Os04g0224600 protein) Q7XSW9 Q7XSW9_ORYSJ Os04g0224600 Os04g0224600 OsJ_13893 OSJNBb0072N21.7 OSNPB_040224600 ENOG411EKIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411EKIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: ubiquitin domain-containing protein NA NA NA NA NA NA NA ENOG411EKIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine acetyltransferase N-terminal Probable serine acetyltransferase 3 (EC 2.3.1.30) (OsSERAT2;1),Probable serine acetyltransferase 4 (EC 2.3.1.30) (OsSERAT2;2) Q0DUI1,Q10QH1 SAT3_ORYSJ,SAT4_ORYSJ SAT3 Os03g0185000 LOC_Os03g08660,SAT4 Os03g0196600 LOC_Os03g10050 ENOG411EKIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3143) NA NA NA NA NA NA NA ENOG411EKIB SLP1 Q8L774,F4HNW2,F4HNW0 SLP1_ARATH,F4HNW2_ARATH,F4HNW0_ARATH Shewanella-like protein phosphatase 1 (AtSLP1) (EC 3.1.-.-),Calcineurin-like metallo-phosphoesterase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21976480}. FUNCTION: Shows phosphatase activity, hydrolyzing the artificial substrate para-nitrophenylphosphate (pNPP) in vitro. {ECO:0000269|PubMed:21976480}. 3.1.-.- 43732,43293,45080 Shewanella-like protein phosphatase 1 (AtSLP1) (EC 3.1.-.-),Calcineurin-like metallo-phosphoesterase superfamily protein chloroplast [GO:0009507]; manganese ion binding [GO:0030145]; phosphatase activity [GO:0016791]; phosphoprotein phosphatase activity [GO:0004721],hydrolase activity [GO:0016787],peroxisome [GO:0005777]; hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in rosettes leaves, shoots and flowers (at protein level). {ECO:0000269|PubMed:21976480}. locus:2007472; AT1G07010 Calcineurin-like phosphoesterase Os10g0394100 protein Q0IXW7 Q0IXW7_ORYSJ Os10g0394100 OSNPB_100394100 ENOG411EKID TOPP1 P30366 PP11_ARATH Serine/threonine-protein phosphatase PP1 isozyme 1 (EC 3.1.3.16) FUNCTION: Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro (PubMed:21222654, PubMed:26943172). Acts as negative regulator of abscisic acid (ABA) signaling. In vitro, can dephosphorylate and inhibit the kinase activity of SRK2E/SNRK2.6, an activator of ABA signaling. {ECO:0000269|PubMed:21222654, ECO:0000269|PubMed:26943172}. 3.1.3.16 36279 Serine/threonine-protein phosphatase PP1 isozyme 1 (EC 3.1.3.16) protein phosphatase type 1 complex [GO:0000164]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2043122; AT2G29400 serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411EKIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter NA NA NA NA NA NA NA ENOG411EKII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter NA NA NA NA NA NA NA ENOG411EDVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EG22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWP-RK domain NA NA NA NA NA NA NA ENOG411EG2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CobW_C NA NA NA NA NA NA NA ENOG411EG2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411E327 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E323 SAP2 Q8H0X0 SAP2_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 2 (AtSAP2) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 18429 Zinc finger A20 and AN1 domain-containing stress-associated protein 2 (AtSAP2) DNA binding [GO:0003677]; zinc ion binding [GO:0008270] locus:2008251; AT1G51200 zinc finger A20 and AN1 domain-containing stress-associated protein Zinc finger A20 and AN1 domain-containing stress-associated protein 4 (OsSAP4),Zinc finger A20 and AN1 domain-containing stress-associated protein 8 (OsSAP8) (Stress-associated protein 3),Os06g0612800 protein (Fragment) Q6H7P8,A3BDI8,A0A0P0WYN6 SAP4_ORYSJ,SAP8_ORYSJ,A0A0P0WYN6_ORYSJ SAP4 Os02g0195600 LOC_Os02g10200 OJ1225_F07.15,SAP8 SAP3 Os06g0612800 LOC_Os06g41010 OsJ_021110 P0417G12.11 P0429G06.28,Os06g0612800 OSNPB_060612800 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E320 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EK2Z SCD1 Q8RXA7,F4I062,F4I061 SCD1_ARATH,F4I062_ARATH,F4I061_ARATH DENN domain and WD repeat-containing protein SCD1 (Protein STOMATAL CYTOKINESIS DEFECTIVE 1),Stomatal cytokinesis defective / SCD1 protein (SCD1) DISRUPTION PHENOTYPE: Defects in seedling development, root elongation, leaf expansion, flower morphogenesis and fertility due to defective cytokinesis in epidermal cells. {ECO:0000269|PubMed:12874123}. Dwarf; Small rosette; Short roots; Flower bud development arrests; Sterile; Abnormal stomata, root hair, and trichome development; Altered leaf pavement cell shape-S. Bednarek-2002 FUNCTION: Involved in growth and development through its role in cytokinesis and polarized cell expansion (PubMed:12874123). Required for plasma membrane internalization. May function in clathrin-mediated membrane trafficking, including plasma membrane endocytosis, essential to both cytokinesis and cell expansion (PubMed:24179130). Acts as a negative regulator of basal resistance against bacteria (PubMed:20472560). {ECO:0000269|PubMed:12874123, ECO:0000269|PubMed:20472560, ECO:0000269|PubMed:24179130}. R-ATH-8951664;R-ATH-983168; 131593,101655,116049 DENN domain and WD repeat-containing protein SCD1 (Protein STOMATAL CYTOKINESIS DEFECTIVE 1),Stomatal cytokinesis defective / SCD1 protein (SCD1) clathrin-coated vesicle [GO:0030136]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; plasma membrane [GO:0005886]; cytokinesis by cell plate formation [GO:0000911]; guard mother cell cytokinesis [GO:0010235]; multidimensional cell growth [GO:0009825]; negative regulation of innate immune response [GO:0045824]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, buds and flowers. {ECO:0000269|PubMed:12874123}. locus:2028481; AT1G49040 dDENN domain Os01g0575500 protein A0A0P0V4C5 A0A0P0V4C5_ORYSJ Os01g0575500 OSNPB_010575500 ENOG411EK2V Q9FM87 FBD26_ARATH Putative FBD-associated F-box protein At5g56440 49207 Putative FBD-associated F-box protein At5g56440 locus:2161073; AT5G56440 FBOX F-box domain containing protein, expressed (Os11g0200600 protein) H2KWE1 H2KWE1_ORYSJ Os11g0200600 LOC_Os11g09430 OSNPB_110200600 ENOG411EK2S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain DnaJ protein ERDJ3A (Chaperone protein dnaJ C27) (OsDjC27) (Endoplasmic reticulum dnaJ domain-containing protein 3A) (OsERdj3A) Q10MW6 DJC27_ORYSJ ERDJ3A DJC27 Os03g0293000 LOC_Os03g18200 FUNCTION: May play a role in protein folding in the endoplasmic reticulum. {ECO:0000305|PubMed:24153418}. ENOG411EK2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mad3_BUB1_I NA NA NA NA NA NA NA ENOG411EK2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os09g0296900 protein (cDNA clone:J023149F04, full insert sequence) Q0J2U9 Q0J2U9_ORYSJ Os09g0296900 Os09g0296900 OSNPB_090296900 ENOG411EK2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LisH Os03g0860900 protein (Transcriptional corepressor LEUNIG, putative, expressed) (cDNA clone:J013079H15, full insert sequence) Q10A93 Q10A93_ORYSJ Os03g0860900 LOC_Os03g64300 Os03g0860900 OsJ_13458 OSNPB_030860900 ENOG411EK2I LUG Q9FUY2,F4JUD2 LEUNG_ARATH,F4JUD2_ARATH Transcriptional corepressor LEUNIG (Protein ROTUNDA2),Transcriptional corepressor LEUNIG DISRUPTION PHENOTYPE: Slight defects in seed mucilage extrusion (PubMed:21362134, PubMed:21402796). Ectopic expression of AGAMOUS, leading to the replacement of sepals by carpels and stamens and of petals by stamens (PubMed:15277686). Wide and serrated vegetative leaf lamina, narrow cauline leaves, large palisade cells and reduced fertility (PubMed:15208345). In plants lacking both LUG and LUH, embryo lethality and abnormal flowers (PubMed:18390806). Enhance the polarity and growth defects of fil yab3 and luh/+ lug mutant leaves, being partially abaxialized (PubMed:19837869). {ECO:0000269|PubMed:15208345, ECO:0000269|PubMed:15277686, ECO:0000269|PubMed:18390806, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:21362134, ECO:0000269|PubMed:21402796}. unfused carpels; partially female sterile; partial homeotic transformation from sepals to carpaloid or staminoid sepals in whorl 1; petals and stamens reduced in number; narrow leaves and floral organs; enhances apetala2 characteristics; negatively regulates agamous expression in whorl 1 and whorl 2; alters expression patterns of apetala1 apetala3 agamous and pistillata,Additive phenotype. The number of second-whorl organs was reduced in lug-1 rbe-3 double mutants and these remaining organs were primarily staminoid. Thus rbe-3 enhanced the second-whorl phenotype of lug-1 mutants. The double mutant rarely produced any seeds suggesting a more severe defect in female fertility in the double mutant compared with either single mutant. However no enhancement of the outer integument growth defect was observed.,Double homozygote are difficult to recover and may die very early in embryogenesis. Plants that do form are reduced in size with mature plants as small as single leaves. The inflorescence bears few flowers consisting of only carpels.,Reduced fertility- siliques do not elongate. Flower phenotype resembles the lug-16 single mutant with narrow sepals and petals. A percentage are also embryo lethal.,Mutant flowers have carpelloid sepals and sepal like organs topped with horns. No petals and stames are absent or fused to first whorl organs. Sterile. Narrow leaves; Homeotic floral transformations-E. Meyerowitz-1995 FUNCTION: Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development (PubMed:11782418, PubMed:15277686, PubMed:7743940). Implicated in embryo and floral development (PubMed:18390806). Involved in post-synthesis cell wall modifications necessary for mucilage extrusion from seeds upon imbibition, probably by promoting the expression of genes required for mucilage maturation (PubMed:21362134, PubMed:21402796). Involved in vegetative leaf morphogenesis at later stages of leaf development by restricting cell expansion during leaf growth (PubMed:15208345). Regulates the maintenance on leaf polarity and meristem activity as well as the initiation of embryonic shoot apical meristem (SAM) development (PubMed:19837869). {ECO:0000269|PubMed:11782418, ECO:0000269|PubMed:15208345, ECO:0000269|PubMed:15277686, ECO:0000269|PubMed:18390806, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:21362134, ECO:0000269|PubMed:21402796, ECO:0000269|PubMed:7743940}. 102233,106520 Transcriptional corepressor LEUNIG (Protein ROTUNDA2),Transcriptional corepressor LEUNIG nucleus [GO:0005634]; cell differentiation [GO:0030154]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to external biotic stimulus [GO:0071217]; flower development [GO:0009908]; galacturonan metabolic process [GO:0010393]; meristem maintenance [GO:0010073]; mucilage extrusion from seed coat [GO:0080001]; mucilage metabolic process involved in seed coat development [GO:0048359]; negative regulation of transcription, DNA-templated [GO:0045892]; polarity specification of adaxial/abaxial axis [GO:0009944]; positive regulation of unidimensional cell growth [GO:0051512]; regulation of embryonic development [GO:0045995]; regulation of flower development [GO:0009909]; regulation of leaf development [GO:2000024]; regulation of shoot apical meristem development [GO:1902183]; response to auxin [GO:0009733]; response to bacterium [GO:0009617]; response to cycloheximide [GO:0046898]; response to fungus [GO:0009620]; response to hypoxia [GO:0001666]; response to nematode [GO:0009624]; response to oxidative stress [GO:0006979]; response to salt [GO:1902074]; response to silver ion [GO:0010272]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; flower development [GO:0009908]; mucilage extrusion from seed coat [GO:0080001] DEVELOPMENTAL STAGE: Expressed prominently during both female and male gametes development (PubMed:11058164). Accumulates throughout young developing leaves, before being confined to the vasculature of older leaves (PubMed:19837869). {ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:19837869}. TISSUE SPECIFICITY: Expressed in young flower primordia, later becomes localized to petals, stamens and carpels. Is also expressed in vegetative tissues (PubMed:11058164). Expressed in roots, stems, leaves, seedlings, apex, flowers, flower organs and seeds (PubMed:18390806). {ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:18390806}. locus:2131327; AT4G32551 transcriptional corepressor Os01g0177100 protein (Putative transcriptional corepressor LEUNIG),Os01g0177100 protein (Putative transcriptional corepressor LEUNIG) (cDNA clone:J033115K06, full insert sequence) Q5VRV6,Q5VRV5 Q5VRV6_ORYSJ,Q5VRV5_ORYSJ P0013F10.23-1 Os01g0177100 OSNPB_010177100,P0013F10.23-2 Os01g0177100 OSNPB_010177100 ENOG411EK2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EK2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EK2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os04g0231332 protein A0A0P0W7N3 A0A0P0W7N3_ORYSJ Os04g0231332 OSNPB_040231332 ENOG411EK28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EK29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EK26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Source UniProtKB NA NA NA NA NA NA NA ENOG411EK27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK24 MFC16.13 Q9FI18,Q1G367,A0A1P8AQ02,A0A1P8BG68,F4HPP4 Q9FI18_ARATH,Q1G367_ARATH,A0A1P8AQ02_ARATH,A0A1P8BG68_ARATH,F4HPP4_ARATH Gb|AAF30348.1 (Ribonuclease H superfamily polynucleotidyl transferase),Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Thioredoxin family protein,Ribonuclease H superfamily polynucleotidyl transferase 12101,30665,27491,14811,35821 Gb|AAF30348.1 (Ribonuclease H superfamily polynucleotidyl transferase),Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Thioredoxin family protein,Ribonuclease H superfamily polynucleotidyl transferase nucleic acid binding [GO:0003676]; transferase activity [GO:0016740],nucleic acid binding [GO:0003676],cytoplasm [GO:0005737]; nucleic acid binding [GO:0003676]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2163391;,locus:5019474881;,locus:2011571; AT5G44470,AT5G65005,AT1G52990 Inherit from euNOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EK25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase TYW3 NA NA NA NA NA NA NA ENOG411EK20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PAP associated domain containing NA NA NA NA NA NA NA ENOG411EK21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411E32G IQ-domain 12,IQD12 Q9LZB4,A0A1P8BH03,F4I407 Q9LZB4_ARATH,A0A1P8BH03_ARATH,F4I407_ARATH IQ-domain 12 (Uncharacterized protein F8F6_170),IQ-domain 12,Calmodulin binding protein 46041,46169,17778 IQ-domain 12 (Uncharacterized protein F8F6_170),IQ-domain 12,Calmodulin binding protein locus:2150650;,locus:504956236; AT5G03960,AT1G76705 IQ-domain NA NA NA NA NA NA NA ENOG411E32C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Transmembrane protein 18 NA NA NA NA NA NA NA ENOG411E32N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L.2 60S ribosomal protein L2, mitochondrial P92812 RM02_ORYSJ RPL2 ENOG411E32K TAF11B,TAF11 F4HR03,Q9M565 TA11B_ARATH,TAF11_ARATH Transcription initiation factor TFIID subunit 11b (TBP-associated factor 11b) (AtTAF11b),Transcription initiation factor TFIID subunit 11 (TBP-associated factor 11) (AtTAF11) FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 23432,23700 Transcription initiation factor TFIID subunit 11b (TBP-associated factor 11b) (AtTAF11b),Transcription initiation factor TFIID subunit 11 (TBP-associated factor 11) (AtTAF11) transcription factor TFIID complex [GO:0005669]; protein heterodimerization activity [GO:0046982]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; regulation of transcription, DNA-templated [GO:0006355]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2198671;,locus:2120422; AT1G20000,AT4G20280 transcription initiation factor TFIID subunit Os01g0680400 protein (Transcription initiation factor IID p30 beta chain-like) (cDNA clone:J013126J05, full insert sequence) Q5QMA1 Q5QMA1_ORYSJ Os01g0680400 B1144G04.51 OsJ_03014 OSNPB_010680400 P0019E03.6 ENOG411E32V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E32T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) Protein G1-like2,Protein G1-like1,Os08g0248000 protein Q652I1,Q0E3M2,A0A0P0XDG8 G1L2_ORYSJ,G1L1_ORYSJ,A0A0P0XDG8_ORYSJ G1L2 Os06g0672400 LOC_Os06g46030 OSJNBa0032M14.22 P0485A07.32,G1L1 Os02g0166800 LOC_Os02g07030,Os08g0248000 OSNPB_080248000 FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. ENOG411E32U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA fasciclin-like arabinogalactan protein Os02g0461000 protein (cDNA clone:J023092G05, full insert sequence) Q6K6F8 Q6K6F8_ORYSJ Os02g0461000 OSNPB_020461000 P0644G05.16 ENOG411E32S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os12g0606200 protein,Os12g0606701 protein A0A0P0YCV2,A0A0P0YBY9 A0A0P0YCV2_ORYSJ,A0A0P0YBY9_ORYSJ Os12g0606200 OSNPB_120606200,Os12g0606701 OSNPB_120606701 ENOG411E32Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Invertase inhibitor OSJNBa0013K16.20 protein (OSJNBb0016D16.3 protein) (Os04g0587100 protein) (cDNA, clone: J090070F17, full insert sequence),Os04g0587200 protein Q7XP47,A0A0P0WEA4 Q7XP47_ORYSJ,A0A0P0WEA4_ORYSJ Os04g0587100 OsJ_15940 OSJNBa0013K16.20 OSJNBb0016D16.3 OSNPB_040587100,Os04g0587200 OSNPB_040587200 ENOG411DVJ9 A3KPF3 A3KPF3_ARATH ARM repeat superfamily protein (At3g02710) R-ATH-72163; 60146 ARM repeat superfamily protein (At3g02710) spliceosomal complex [GO:0005681] locus:2076974; AT3G02710 beta-catenin-like protein Os02g0831300 protein (Putative nuclear protein NAP),Os02g0831300 protein (Fragment) Q6K975,A0A0P0VRL7 Q6K975_ORYSJ,A0A0P0VRL7_ORYSJ Os02g0831300 OJ1149_C12.10 OsJ_08995 OSNPB_020831300,Os02g0831300 OSNPB_020831300 ENOG411DVJ4 XEG113 Q8VXZ5 XG113_ARATH Arabinosyltransferase XEG113 (EC 2.4.2.-) (Protein LATERAL ROOT DEVELOPMENT 5) (Xyloglucanase 113) DISRUPTION PHENOTYPE: Increased elongation of hypocotyls (PubMed:19667208). Reduced root hair length (PubMed:21680836). Reduced content of arabinosylated extensins in cell walls (PubMed:19667208, PubMed:21680836). Increased lateral root formation (PubMed:24619997). {ECO:0000269|PubMed:19667208, ECO:0000269|PubMed:21680836, ECO:0000269|PubMed:24619997}. FUNCTION: Plays a role in the arabinosylation of cell wall components. Involved in the arabinosylation of extensin proteins in root hair cells (PubMed:19667208, PubMed:21680836). Extensins are structural glycoproteins present in cell walls and its arabinosylation is important for cell elongation, root hair cell development, lateral root development and root hair tip growth (PubMed:19667208, PubMed:21680836, PubMed:24619997, PubMed:25944827). {ECO:0000269|PubMed:19667208, ECO:0000269|PubMed:21680836, ECO:0000269|PubMed:24619997, ECO:0000269|PubMed:25944827}. 2.4.2.- 73213 Arabinosyltransferase XEG113 (EC 2.4.2.-) (Protein LATERAL ROOT DEVELOPMENT 5) (Xyloglucanase 113) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; arabinosyltransferase activity [GO:0052636]; cell wall pectin biosynthetic process [GO:0052325]; protein glycosylation [GO:0006486]; root hair cell development [GO:0080147] locus:2058769; AT2G35610 Nucleotide-diphospho-sugar transferase Glycosyltransferase (EC 2.4.2.-) Q6F2V4 Q6F2V4_ORYSJ OSJNBa0010D22.21 Os03g0586300 OSNPB_030586300 ENOG411DVJ5 RIK Q9LIA4,A0A1I9LNA6 RIK_ARATH,A0A1I9LNA6_ARATH Protein RIK (Rough sheath 2-interacting KH domain protein) (RS2-interacting KH domain protein),RS2-interacting KH protein 62535,49790 Protein RIK (Rough sheath 2-interacting KH domain protein) (RS2-interacting KH domain protein),RS2-interacting KH protein nucleus [GO:0005634]; RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in vegetative tissues. {ECO:0000269|PubMed:16243907}. locus:2093792; AT3G29390 RNA binding Os03g0213900 protein,Os03g0213900 protein (Fragment) Q0DU07,A0A0P0VUM0 Q0DU07_ORYSJ,A0A0P0VUM0_ORYSJ Os03g0213900 Os03g0213900 OSNPB_030213900,Os03g0213900 OSNPB_030213900 ENOG411DVJ6 SKIP8 Q9T0B0,Q93YV9,A0A1P8B3V7 FB335_ARATH,SKIP8_ARATH,A0A1P8B3V7_ARATH Probable F-box protein At4g23960,F-box protein SKIP8 (SKP1-interacting partner 8),F-box family protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 14067,26254,22212 Probable F-box protein At4g23960,F-box protein SKIP8 (SKP1-interacting partner 8),F-box family protein protein ubiquitination [GO:0016567] locus:2138166;,locus:505006436; AT4G23960,AT4G10925 F-box protein Os01g0550200 protein Q8RYS9 Q8RYS9_ORYSJ Os01g0550200 B1156H12.26 OSJNBa0024F24.11 OSNPB_010550200 ENOG411DVJ7 NRPB2 P38420 NRPB2_ARATH DNA-directed RNA polymerase II subunit 2 (DNA-directed RNA polymerase II 135 kDa polypeptide) (DNA-directed RNA polymerase II subunit RPB2) (RNA polymerase II subunit 2) (RNA polymerase II subunit B2) (EC 2.7.7.6) (Protein EMBRYO DEFECTIVE 1989) DISRUPTION PHENOTYPE: Defect in seed production due to female gametophyte developmental arrest. {ECO:0000269|PubMed:18723889}. Null: Complete female gametophyte defective; Male gametophyte defective; Knockdown: Embryo defective-C. Pikaard-2008 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template (By similarity). {ECO:0000250}.; FUNCTION: Essential for the completion of the three rounds of mitosis in female megaspores required for the development of mature gametophytes (PubMed:18723889). {ECO:0000269|PubMed:18723889}. MISCELLANEOUS: The binding of ribonucleoside triphosphate to the RNA polymerase II transcribing complex probably involves a two-step mechanism. The initial binding seems to occur at the entry (E) site and involves a magnesium ion coordinated by three conserved aspartate residues of the two largest RNA Pol II subunits (By similarity). {ECO:0000250}. R-ATH-113418;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 2.7.7.6 135019 DNA-directed RNA polymerase II subunit 2 (DNA-directed RNA polymerase II 135 kDa polypeptide) (DNA-directed RNA polymerase II subunit RPB2) (RNA polymerase II subunit 2) (RNA polymerase II subunit B2) (EC 2.7.7.6) (Protein EMBRYO DEFECTIVE 1989) cytosol [GO:0005829]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; ribonucleoside binding [GO:0032549]; transcription from RNA polymerase II promoter [GO:0006366] locus:2119013; AT4G21710 DNA-directed RNA polymerase Os03g0646800 protein A0A0P0W1G0 A0A0P0W1G0_ORYSJ Os03g0646800 OSNPB_030646800 ENOG411DVJ0 GH9C3 Q8L7I0,Q42059,A0A1P8B3K9,A0A1P8B3L0 GUN19_ARATH,GUN6_ARATH,A0A1P8B3K9_ARATH,A0A1P8B3L0_ARATH Endoglucanase 19 (EC 3.2.1.4) (Endo-1,4-beta glucanase 19),Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6),Endoglucanase (EC 3.2.1.4) ARA:AT4G11050-MONOMER;,ARA:AT1G64390-MONOMER; 3.2.1.4 69345,68592,60090,69274 Endoglucanase 19 (EC 3.2.1.4) (Endo-1,4-beta glucanase 19),Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6),Endoglucanase (EC 3.2.1.4) extracellular region [GO:0005576]; carbohydrate binding [GO:0030246]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],cellulase activity [GO:0008810]; cellulose catabolic process [GO:0030245],carbohydrate binding [GO:0030246]; cellulase activity [GO:0008810]; cellulose catabolic process [GO:0030245] locus:2136073;,locus:2014205; AT4G11050,AT1G64390 Endoglucanase Endoglucanase 15 (EC 3.2.1.4) (Endo-1,4-beta glucanase 15) (OsCel9C),Endoglucanase 2 (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsCel9A) (OsGLU5),Endoglucanase 1 (EC 3.2.1.4) (Endo-1,4-beta glucanase 1) (OsCel9B) (OsGLU7) Q6L4I2,Q5NAT0,Q5NAT8 GUN15_ORYSJ,GUN2_ORYSJ,GUN1_ORYSJ Os05g0212300 LOC_Os05g12150 OSJNBa0074P11.11,GLU5 Os01g0220100 LOC_Os01g12070 OsJ_000889 P0483F08.13 P0489G09.28,GLU7 Os01g0219600 LOC_Os01g12030 OsJ_000887 P0483F08.8 P0489G09.23 FUNCTION: Hydrolyzes 1,4-beta-glycosyl linkages of 1,4-beta-glucans and 1,3-1,4-beta-glucans. Possesses broad substrate specificity for hemicelluloses of type II cell walls. Substrate preference is carboxymethyl-cellulose > 1,3-1,4-beta-glucan > lichenan > arabinoxylan > phospho-swollen cellulose > xylan > glucomannan. May participate in lateral root development. {ECO:0000269|PubMed:17056618, ECO:0000269|PubMed:17056619}. ENOG411DVJ1 ABCI8,ABCI9 Q9ZS97,Q3E8H7 AB8I_ARATH,AB9I_ARATH UPF0051 protein ABCI8, chloroplastic (ABC transporter I family member 8) (ABC transporter ABCI.8) (AtABCI8) (Non-intrinsic ABC protein 1) (Protein ABC1) (Plastid sufB-like protein) (Protein LONG AFTER FAR-RED 6),Putative UPF0051 protein ABCI9 (ABC transporter I family member 9) (ABC transporter ABCI.9) (AtABCI9) DISRUPTION PHENOTYPE: Plant have an enhanced hypocotyl elongation in far-red light, and accumulates protoporphyrin IX. {ECO:0000269|PubMed:11156608}. Slightly pale green seedlings; Long hypocotyl in far-red light-N. Chua-2001 FUNCTION: Involved in light signaling, probably by mediating the transport and correct distribution of protoporphyrin IX, a chlorophyll precursor, in response to far-red light. {ECO:0000269|PubMed:11156608}. 61868,53086 UPF0051 protein ABCI8, chloroplastic (ABC transporter I family member 8) (ABC transporter ABCI.8) (AtABCI8) (Non-intrinsic ABC protein 1) (Protein ABC1) (Plastid sufB-like protein) (Protein LONG AFTER FAR-RED 6),Putative UPF0051 protein ABCI9 (ABC transporter I family member 9) (ABC transporter ABCI.9) (AtABCI9) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; cellular iron ion homeostasis [GO:0006879]; iron-sulfur cluster assembly [GO:0016226]; regulation of response to red or far red light [GO:2000030],iron-sulfur cluster assembly [GO:0016226] locus:2138947;,locus:504954963; AT4G04770,AT5G44316 UPF0051 protein ABCI8 ABC transporter subunit-like (Os01g0830000 protein) (cDNA clone:J023069G03, full insert sequence) Q941V2 Q941V2_ORYSJ Os01g0830000 B1088C09.40 OsJ_03952 OSNPB_010830000 P0446G04.13 ENOG411DVJ2 Q9LHN2 Q9LHN2_ARATH At3g18870 (Mitochondrial transcription termination factor family protein) 31432 At3g18870 (Mitochondrial transcription termination factor family protein) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2087926; AT3G18870 mTERF NA NA NA NA NA NA NA ENOG411DVJ3 LOG5 Q8LBB7,A0A1P8B6D1 LOG5_ARATH,A0A1P8B6D1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 (EC 3.2.2.n1) (Protein LONELY GUY 5),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions; due to the redundancy with other LOG proteins. {ECO:0000269|PubMed:19837870}. FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000269|PubMed:19837870}.,FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000256|RuleBase:RU363015}. ARA:GQT-1475-MONOMER; 3.2.2.n1 25190,21882 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 (EC 3.2.2.n1) (Protein LONELY GUY 5),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1) cytosol [GO:0005829]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691],hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691] TISSUE SPECIFICITY: Expressed in roots and shoots. Detected in vascular tissues of roots, cotyledons, and leaves, axillary buds, immature and mature flowers, fruit abscission zones and ovules. {ECO:0000269|PubMed:19837870}. locus:2132821; AT4G35190 Cytokinin riboside 5'-monophosphate phosphoribohydrolase Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9 (EC 3.2.2.n1) (Protein LONELY GUY-like 9) B7E7M8 LOGL9_ORYSJ LOGL9 Os09g0547500 LOC_Os09g37540 OSJNBa0038K02.28 FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}. ENOG411DVJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like serine threonine-protein kinase Os03g0294800 protein (Ser-thr protein kinase, putative, expressed),Os03g0294800 protein (Fragment) Q10MU7,A0A0P0VX41 Q10MU7_ORYSJ,A0A0P0VX41_ORYSJ Os03g0294800 LOC_Os03g18370 Os03g0294800 OsJ_10471 OSNPB_030294800,Os03g0294800 OSNPB_030294800 ENOG411DVJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tropinone reductase NA NA NA NA NA NA NA ENOG411DVJU CKX2,CKX4,CKX3 Q9FUJ3,Q9FUJ2,Q9LTS3,A0A1P8BER3,A0A1P8B473,F4JNR1 CKX2_ARATH,CKX4_ARATH,CKX3_ARATH,A0A1P8BER3_ARATH,A0A1P8B473_ARATH,F4JNR1_ARATH Cytokinin dehydrogenase 2 (EC 1.5.99.12) (Cytokinin oxidase 2) (AtCKX2) (CKO 2),Cytokinin dehydrogenase 4 (EC 1.5.99.12) (Cytokinin oxidase 4) (AtCKX4) (CKO 4),Cytokinin dehydrogenase 3 (EC 1.5.99.12) (Cytokinin oxidase 3) (AtCKX3) (CKO 3),Cytokinin oxidase 3,Cytokinin oxidase 4 FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000269|PubMed:14555694}. ARA:AT2G19500-MONOMER;MetaCyc:AT2G19500-MONOMER;,ARA:AT4G29740-MONOMER;MetaCyc:AT4G29740-MONOMER;,ARA:AT5G56970-MONOMER;MetaCyc:AT5G56970-MONOMER; 1.5.99.12; 1.5.99.12 55583,58061,59423,47593,40366,46607 Cytokinin dehydrogenase 2 (EC 1.5.99.12) (Cytokinin oxidase 2) (AtCKX2) (CKO 2),Cytokinin dehydrogenase 4 (EC 1.5.99.12) (Cytokinin oxidase 4) (AtCKX4) (CKO 4),Cytokinin dehydrogenase 3 (EC 1.5.99.12) (Cytokinin oxidase 3) (AtCKX3) (CKO 3),Cytokinin oxidase 3,Cytokinin oxidase 4 endoplasmic reticulum lumen [GO:0005788]; extracellular space [GO:0005615]; cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; primary amine oxidase activity [GO:0008131]; cytokinin catabolic process [GO:0009823],extracellular space [GO:0005615]; cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; primary amine oxidase activity [GO:0008131]; cytokinin catabolic process [GO:0009823],endoplasmic reticulum [GO:0005783]; vacuole [GO:0005773]; cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; primary amine oxidase activity [GO:0008131]; cytokinin catabolic process [GO:0009823],integral component of membrane [GO:0016021]; cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cytokinin metabolic process [GO:0009690],cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cytokinin metabolic process [GO:0009690] DEVELOPMENTAL STAGE: High expression in stomatal meristemoids, but ceased during the differentiation of guard cells. {ECO:0000269|PubMed:14555694}. TISSUE SPECIFICITY: Expressed in the shoot apex, in stipules, and occasionally in the most apical part of the inflorescence stems. Not detected in roots. {ECO:0000269|PubMed:14555694}.,TISSUE SPECIFICITY: Expressed in trichomes and in developing stomata of young growing leaves. Strong expression in stipules and in the root cap, but not detected in the root meristem. {ECO:0000269|PubMed:14555694}.,TISSUE SPECIFICITY: Very weak expression in the young shoot tissues around two weeks after germination. {ECO:0000269|PubMed:14555694}. locus:2050349;,locus:2134423;,locus:2164615; AT2G19500,AT4G29740,AT5G56970 cytokinin dehydrogenase Cytokinin dehydrogenase 10 (EC 1.5.99.12) (Cytokinin oxidase 10) (OsCKX10),Cytokinin dehydrogenase 7 (EC 1.5.99.12) (Cytokinin oxidase 7) (OsCKX7),Cytokinin dehydrogenase 6 (EC 1.5.99.12) (Cytokinin oxidase 6) (OsCKX6),Os06g0572300 protein,Os02g0220100 protein Q5Z620,Q6YW50,Q6YW51,A0A0P0WYA1,A0A0P0VGS1 CKX10_ORYSJ,CKX7_ORYSJ,CKX6_ORYSJ,A0A0P0WYA1_ORYSJ,A0A0P0VGS1_ORYSJ CKX10 Os06g0572300 LOC_Os06g37500 OSJNBa0006A22.17 P0610D01.25,CKX7 Os02g0220100 LOC_Os02g12780 B1131G07.5 OsJ_05920 P0027A02.34,CKX6 Os02g0220000 LOC_Os02g12770 B1131G07.3 OsJ_05919 P0027A02.32,Os06g0572300 OSNPB_060572300,Os02g0220100 OSNPB_020220100 FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000250}. ENOG411DVJV POT12 O80739 POT12_ARATH Putative potassium transporter 12 (AtPOT12) FUNCTION: Putative potassium transporter. 92088 Putative potassium transporter 12 (AtPOT12) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079] locus:2195688; AT1G60160 Potassium transporter Potassium transporter 23 (OsHAK23),Os09g0376900 protein Q6H4R6,A0A0P0XM46 HAK23_ORYSJ,A0A0P0XM46_ORYSJ HAK23 Os09g0376900 LOC_Os09g21000 OsJ_29162 OSJNBa0041C07.15-1 P0711A01.29-1,Os09g0376900 OSNPB_090376900 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DVJW Q945M3,F4I7N5 Q945M3_ARATH,F4I7N5_ARATH At1g23890/T23E23_13 (NHL domain-containing protein) (Uncharacterized protein At1g23890),NHL domain-containing protein 27867,43587 At1g23890/T23E23_13 (NHL domain-containing protein) (Uncharacterized protein At1g23890),NHL domain-containing protein integral component of membrane [GO:0016021] locus:2199872; AT1G23890 NHL repeat-containing protein Os08g0414600 protein (cDNA clone:J033050N07, full insert sequence) (cDNA clone:J033050N09, full insert sequence) Q6Z549 Q6Z549_ORYSJ Os08g0414600 OSJNBa0007M04.44 OSNPB_080414600 ENOG411DVJQ CCT5 O04450,Q67ZE4,A0A1P8ARS7 TCPE_ARATH,Q67ZE4_ARATH,A0A1P8ARS7_ARATH T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (Chaperonin CCT5),TCP-1/cpn60 chaperonin family protein (Uncharacterized protein At1g67760),TCP-1/cpn60 chaperonin family protein FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. {ECO:0000305}.,FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. R-ATH-390471;R-ATH-6814122; 59384,13343,53758 T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (Chaperonin CCT5),TCP-1/cpn60 chaperonin family protein (Uncharacterized protein At1g67760),TCP-1/cpn60 chaperonin family protein chaperonin-containing T-complex [GO:0005832]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077],chaperonin-containing T-complex [GO:0005832]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2024051;,locus:2008635; AT1G24510,AT1G67760 T-complex protein 1 subunit Os10g0568200 protein (Fragment),Os06g0562600 protein (Putative T complex protein) (cDNA clone:J013095K16, full insert sequence) Q0IVI8,Q5Z907 Q0IVI8_ORYSJ,Q5Z907_ORYSJ Os10g0568200 OSNPB_100568200,Os06g0562600 Os06g0562600 OSNPB_060562600 P0656E03.11 FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. ENOG411DVJR SEU Q8W234 SEUSS_ARATH Transcriptional corepressor SEUSS (AtSEU) DISRUPTION PHENOTYPE: Ectopic and precocious expression of AGAMOUS, leading to partial homeotic transformation of the external floral organs. {ECO:0000269|PubMed:15277686, ECO:0000269|PubMed:16854969, ECO:0000269|PubMed:20007451}. Defective in floral organ identity and organ number; late-arising flowers exhibited more severe phenotypes than early-arising flowers; in the late-arising flowers the organ number in whorls 2 and 3 is reduced; on average only 3 organs are found in whorl 2 and 5 organs in whorl 3; 7% of whorl 1 organs display partial homeotic transformation and possess sepal/petal or sepal/carpel mosaics; whorl 2 organs are most often narrow petals but stamenoid petals were occasionally observed; alternatively petals can be replaced by filamentous or tubular structures; whorl 3 stamens are typically reduced slightly in size; the whorl 4 gynoecium is often slightly split at the top; sometimes horn-like protrusions are seen at the gynoecium apex. Narrow floral organs; narrow leaves; reduced plant height (semi dwarf); increased lateral branching; reduced number of seeds per silique.,Enhanced flower phenotype compared with both single mutant plants reduction in floral organ number and enhanced carpelloidy of whorl 1 organs whorl 2 organs are completely absent. Deregulation of AG and AP3 expression in floral meristem and floral organ primordia.,Resembles seu-1 single mutant with reduced stamen number. Dwarf; Narrow leaves; Increased branching; Homeotic floral transformations; Incomplete penetrance of abnormal integuments-Z. Liu-2002 FUNCTION: DNA-binding adapter subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and LEUNIG to repress AGAMOUS expression. In association with LUG, regulates petal shape through AGAMOUS-independent mechanisms. Controls cell division during petal development and enable the proper patterning of petal blade vasculature. Required for the proper elaboration of petal polarity along the adaxial/abaxial axis. May act through direct or indirect regulation of PHABULOSA and YAB1 and thus regulate cellular proliferation within the developing petal blade. In association with AINTEGUMENTA (ANT), coordinates patterning cues and cellular proliferation along the three positional axes of the developing gynoecium. Required for the development of the medial ridge and subsequent ovule initiation. {ECO:0000269|PubMed:15277686, ECO:0000269|PubMed:16625397, ECO:0000269|PubMed:16854969, ECO:0000269|PubMed:18184731, ECO:0000269|PubMed:20007451}. 96232 Transcriptional corepressor SEUSS (AtSEU) nucleoplasm [GO:0005654]; binding, bridging [GO:0060090]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; cell differentiation [GO:0030154]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to external biotic stimulus [GO:0071217]; embryo development ending in seed dormancy [GO:0009793]; gynoecium development [GO:0048467]; plant ovule development [GO:0048481]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to bacterium [GO:0009617]; response to cycloheximide [GO:0046898]; response to fungus [GO:0009620]; response to hypoxia [GO:0001666]; response to nematode [GO:0009624]; response to oxidative stress [GO:0006979]; response to silver ion [GO:0010272]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in root, leaves, seedlings, vegetative and reproductive shoot apical meristems, seeds, floral meristems and all floral organs. {ECO:0000269|PubMed:18184731, ECO:0000269|PubMed:18390806}. locus:2029137; AT1G43850 transcriptional corepressor NA NA NA NA NA NA NA ENOG411DVJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS-box transcription factor MADS-box transcription factor 32 (OsMADS32) Q8S151 MAD32_ORYSJ MADS32 Os01g0726400 LOC_Os01g52680 P0042A10.22 FUNCTION: Probable transcription factor. ENOG411DVJN Q0WVM4,Q8VYT3,A0A1P8B246 Y2239_ARATH,Y4052_ARATH,A0A1P8B246_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At4g30520 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 69694,71194,57262 Probable LRR receptor-like serine/threonine-protein kinase At2g23950 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At4g30520 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; leaf senescence [GO:0010150],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2061466;,locus:2118811; AT2G23950,AT4G30520 LRR receptor-like serine threonine-protein kinase Os08g0442700 protein (Somatic embryogenesis receptor kinase-like protein) (cDNA clone:001-022-F05, full insert sequence),Os08g0442700 protein (Putative somatic embryogenesis receptor kinase) (cDNA clone:J023067P10, full insert sequence) Q6Z8R6,Q6Z8R5 Q6Z8R6_ORYSJ,Q6Z8R5_ORYSJ P0708B04.9-1 Os08g0442700 OSNPB_080442700,P0708B04.9-2 Os08g0442700 OSNPB_080442700 ENOG411DVJH Q56Y15,Q84JD6,A0A1P8B507 Q56Y15_ARATH,Q84JD6_ARATH,A0A1P8B507_ARATH At4g27620 (Intracellular protein transporter) (Uncharacterized protein At4g27620),Intracellular protein transporter (Uncharacterized protein At4g27610),Intracellular protein transporter 36413,37369,29497 At4g27620 (Intracellular protein transporter) (Uncharacterized protein At4g27620),Intracellular protein transporter (Uncharacterized protein At4g27610),Intracellular protein transporter integral component of membrane [GO:0016021] locus:2137687;,locus:2137677; AT4G27620,AT4G27610 NA Os05g0587400 protein (cDNA clone:J033084N12, full insert sequence),Os02g0582200 protein (cDNA clone:J023003F10, full insert sequence) Q6L5C0,Q6EPV6 Q6L5C0_ORYSJ,Q6EPV6_ORYSJ Os05g0587400 Os05g0587400 OJ1007_H05.10 OsJ_19722 OSNPB_050587400,Os02g0582200 OsJ_07283 OSJNBa0016D04.11 OSNPB_020582200 ENOG411DVJI MEE6.21 Q9C8T4,Q9FLL5,F4JWY3 Q9C8T4_ARATH,Q9FLL5_ARATH,F4JWY3_ARATH Myosin heavy chain-related protein (Uncharacterized protein F9N12.8),Myosin heavy chain-related protein (Similarity to myosin heavy chain),Myosin heavy chain-related protein 118451,113134,112362 Myosin heavy chain-related protein (Uncharacterized protein F9N12.8),Myosin heavy chain-related protein (Similarity to myosin heavy chain),Myosin heavy chain-related protein locus:2038446;,locus:2162996; AT1G63300,AT5G41140 protein transport protein-related Os10g0504600 protein (Fragment) A0A0P0XWF4 A0A0P0XWF4_ORYSJ Os10g0504600 OSNPB_100504600 ENOG411DVJJ PCMP-E43 Q9STS9 PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840 78054 Putative pentatricopeptide repeat-containing protein At3g47840 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2100392; AT3G47840 Pentatricopeptide repeat-containing protein Os05g0581300 protein A0A0P0WRD6 A0A0P0WRD6_ORYSJ Os05g0581300 OSNPB_050581300 ENOG411DVJK MYR1,MYR2 Q9FK47,Q9SQQ9,A0A1P8BEW2,A0A1I9LRR7,A0A1I9LRR6 PHLA_ARATH,PHL9_ARATH,A0A1P8BEW2_ARATH,A0A1I9LRR7_ARATH,A0A1I9LRR6_ARATH Myb-related protein 1 (Myb family transcription factor PHL10) (Protein PHR1-LIKE 10),Myb-related protein 2 (Myb family transcription factor PHL9) (Protein NITROGEN STARVATION RESPONSE 1) (AtNSR1) (Protein PHR1-LIKE 9),Myb-related protein 1,Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: No visible phenotype when grown under long days conditions, but early flowering when grown under short days conditions. {ECO:0000269|PubMed:21255164}. FUNCTION: Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.,FUNCTION: Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. 45574,44612,36397,35310,36071 Myb-related protein 1 (Myb family transcription factor PHL10) (Protein PHR1-LIKE 10),Myb-related protein 2 (Myb family transcription factor PHL9) (Protein NITROGEN STARVATION RESPONSE 1) (AtNSR1) (Protein PHR1-LIKE 9),Myb-related protein 1,Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. locus:2172394;,locus:2095933; AT5G18240,AT3G04030 Transcription factor Os03g0325500 protein (Transfactor, putative, expressed),Os05g0488600 protein,Os03g0325500 protein (Fragment) Q10M30,B9FKV5,A0A0P0VWV7 Q10M30_ORYSJ,B9FKV5_ORYSJ,A0A0P0VWV7_ORYSJ Os03g0325500 LOC_Os03g20900 Os03g0325500 OsJ_10679 OSNPB_030325500,Os05g0488600 OsJ_19007 OSNPB_050488600,Os03g0325500 OSNPB_030325500 ENOG411DVJE Q6NLE0,Q9C7V3,Q9SHT8,F4I6P4 FB279_ARATH,Q9C7V3_ARATH,Q9SHT8_ARATH,F4I6P4_ARATH F-box protein At5g41720,F-box protein-like protein (Uncharacterized protein F15H21.5),F-box associated ubiquitination effector family protein (Uncharacterized protein At2g05360),F-box associated ubiquitination effector family protein 21855,42320,40996,41575 F-box protein At5g41720,F-box protein-like protein (Uncharacterized protein F15H21.5),F-box associated ubiquitination effector family protein (Uncharacterized protein At2g05360),F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2160497;,locus:2014190;,locus:2042813;,locus:504956307; AT5G41720,AT1G64290,AT2G05360,AT1G64295 NA Os08g0548800 protein A0A0N7KQ92 A0A0N7KQ92_ORYSJ Os08g0548800 OSNPB_080548800 ENOG411DVJF RAX2 Q9SJL7,A0A1P8B126 RAX2_ARATH,A0A1P8B126_ARATH Transcription factor RAX2 (Myb-related protein 38) (AtMYB38) (Protein REGULATOR OF AXILLARY MERISTEMS 2),Duplicated homeodomain-like superfamily protein FUNCTION: Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. 34057,38906 Transcription factor RAX2 (Myb-related protein 38) (AtMYB38) (Protein REGULATOR OF AXILLARY MERISTEMS 2),Duplicated homeodomain-like superfamily protein nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; blue light signaling pathway [GO:0009785]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}. locus:2057931; AT2G36890 Transcription factor NA NA NA NA NA NA NA ENOG411DVJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GLECT Os02g0577300 protein A0A0P0VKS6 A0A0P0VKS6_ORYSJ Os02g0577300 OSNPB_020577300 ENOG411DVJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitinase class I Chitinase 11 (EC 3.2.1.14) (Pathogenesis related (PR)-3 chitinase 11) Q10S66 CHI11_ORYSJ Cht11 MIRCH38 Os03g0132900 LOC_Os03g04060 OsJ_09305 ENOG411E1CD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os04g0632100 protein,Os04g0633600 protein,Os04g0633300 protein,Os04g0633800 protein,Os04g0632600 protein,Os04g0632500 protein Q0J9T7,A0A0N7KJS0,A0A0P0WF87,A0A0P0WFH6,A0A0N7KJR9,A0A0P0WF95 Q0J9T7_ORYSJ,A0A0N7KJS0_ORYSJ,A0A0P0WF87_ORYSJ,A0A0P0WFH6_ORYSJ,A0A0N7KJR9_ORYSJ,A0A0P0WF95_ORYSJ Os04g0632100 Os04g0632100 OSNPB_040632100,Os04g0633600 OSNPB_040633600,Os04g0633300 OSNPB_040633300,Os04g0633800 OSNPB_040633800,Os04g0632600 OSNPB_040632600,Os04g0632500 OSNPB_040632500 ENOG411ED3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13-beta-glucan synthase component Os06g0112800 protein (Fragment) Q0DF63,A0A0P0WRG4 Q0DF63_ORYSJ,A0A0P0WRG4_ORYSJ Os06g0112800 Os06g0112800 OSNPB_060112800,Os06g0112800 OSNPB_060112800 ENOG411DZZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0217400 protein (Putative cytochrome P450) (cDNA clone:002-122-A09, full insert sequence),Os02g0217300 protein,Os02g0217200 protein Q6YUY8,A0A0P0VGF6,A0A0P0VGG0 Q6YUY8_ORYSJ,A0A0P0VGF6_ORYSJ,A0A0P0VGG0_ORYSJ Os02g0217400 B1307A11.32 OsJ_05898 OSNPB_020217400,Os02g0217300 OSNPB_020217300,Os02g0217200 OSNPB_020217200 ENOG411E56Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EJ7J T5P19_150 Q9LXZ0 Q9LXZ0_ARATH Serine-rich protein-like protein (Uncharacterized protein T5P19_150) 12136 Serine-rich protein-like protein (Uncharacterized protein T5P19_150) locus:2102574; AT3G56500 NA NA NA NA NA NA NA NA ENOG411E6JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region Mini zinc finger protein 2 (OsMIF2) Q6ER22 MIF3_ORYSJ MIF3 LOC_Os09g24810 Os09g0414500 OsJ_29354 P0707C02.4 FUNCTION: Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. ENOG411E6JF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome c oxidase subunit VIIa Os02g0162000 protein (cDNA clone:001-121-E01, full insert sequence) (cDNA clone:J033138B10, full insert sequence),Os07g0647500 protein (cDNA clone:001-020-B01, full insert sequence) Q0E3P3,Q7XIQ1 Q0E3P3_ORYSJ,Q7XIQ1_ORYSJ Os02g0162000 Os02g0162000 OSNPB_020162000,OJ1316_A04.115 P0503D09.132 Os07g0647500 OSNPB_070647500 ENOG411E6JE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Succinate dehydrogenase subunit 7, mitochondrial Q6H611 SDH7_ORYSJ SDH7 Os09g0382500 LOC_Os09g21470 P0505H05.25 ENOG411E6JD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6JC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Maf-like protein NA NA NA NA NA NA NA ENOG411E6JB F6I1.16 Q8W589,Q1H551,Q9FZ44 Q8W589_ARATH,Q1H551_ARATH,Q9FZ44_ARATH At1g16840/F17F16.27,At1g78890 (Uncharacterized protein At1g78890),At1g16840/F17F16.27 (F6I1.16 protein) 17912,17229,17600 At1g16840/F17F16.27,At1g78890 (Uncharacterized protein At1g78890),At1g16840/F17F16.27 (F6I1.16 protein) locus:2037513;,locus:2035510; AT1G16840,AT1G78890 NA NA NA NA NA NA NA NA ENOG411E6JA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: finger protein Os02g0106600 protein (Zinc finger-like) Q6ETD0 Q6ETD0_ORYSJ Os02g0106600 OJ1359_D06.27 OSNPB_020106600 ENOG411E6JN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0470400 protein (cDNA clone:002-176-D10, full insert sequence) Q0D6K7 Q0D6K7_ORYSJ Os07g0470400 Os07g0470400 OSNPB_070470400 ENOG411E6JM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0116100 protein A0A0P0W644 A0A0P0W644_ORYSJ Os04g0116100 OSNPB_040116100 ENOG411E6JK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os06g0714800 protein (cDNA clone:006-204-E07, full insert sequence) (cDNA clone:J023102E22, full insert sequence) Q0D9I1 Q0D9I1_ORYSJ Os06g0714800 Os06g0714800 OSNPB_060714800 ENOG411E6JJ GRXC12 O82254 GRC12_ARATH Putative glutaredoxin-C12 (AtGrxC12) (Protein ROXY 5) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 11261 Putative glutaredoxin-C12 (AtGrxC12) (Protein ROXY 5) cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2043408; AT2G47870 Glutaredoxin NA NA NA NA NA NA NA ENOG411E6JI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: magnesium transporter NA NA NA NA NA NA NA ENOG411E6JH A_IG005I10.3 F4JHB3,Q84JN8,B3H7E2 F4JHB3_ARATH,Q84JN8_ARATH,B3H7E2_ARATH Double-stranded RNA-binding domain (DsRBD)-containing protein,Double-stranded RNA-binding domain (DsRBD)-containing protein (Uncharacterized protein At4g00420) 21549,21419,19192 Double-stranded RNA-binding domain (DsRBD)-containing protein,Double-stranded RNA-binding domain (DsRBD)-containing protein (Uncharacterized protein At4g00420) RNA binding [GO:0003723] locus:2126111; AT4G00420 Double-stranded RNA binding motif Os09g0416500 protein (cDNA, clone: J075104N21, full insert sequence) B7F972 B7F972_ORYSJ Os09g0416500 OSNPB_090416500 ENOG411E6JW F4F15.150 Q9SV00 Q9SV00_ARATH 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (At3g52030) (At3g52040) (Uncharacterized protein F4F15.150) 10182 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (At3g52030) (At3g52040) (Uncharacterized protein F4F15.150) locus:2083755; AT3G52040 NA Os01g0271700 protein A0A0P0V0T2 A0A0P0V0T2_ORYSJ Os01g0271700 OSNPB_010271700 ENOG411E6JV Q3EDB5 Q3EDB5_ARATH Transmembrane protein 12352 Transmembrane protein integral component of membrane [GO:0016021] locus:2036219; AT1G15900 NA NA NA NA NA NA NA NA ENOG411E6JU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E6JT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0346700 protein Q5ZCT6 Q5ZCT6_ORYSJ Os01g0346700 B1146B04.32 OsJ_01664 OSNPB_010346700 ENOG411E6JS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6JR MHF2,AtMHF2 Q8L7N3,F4IBV2 MHF2_ARATH,F4IBV2_ARATH Protein MHF2 homolog (AtMHF2),Centromere protein X FUNCTION: Acts in the same pathway as FANCM to restrain class II meiotic crossing over (CO), and acts with FANCM during meiosis to repair interstrand cross-links (ICLs). {ECO:0000269|PubMed:25038251}. 11681,9791 Protein MHF2 homolog (AtMHF2),Centromere protein X FANCM-MHF complex [GO:0071821]; Fanconi anaemia nuclear complex [GO:0043240]; double-stranded DNA binding [GO:0003690]; DNA repair [GO:0006281]; kinetochore assembly [GO:0051382]; replication fork processing [GO:0031297]; resolution of meiotic recombination intermediates [GO:0000712]; synapsis [GO:0007129],DNA repair [GO:0006281]; kinetochore assembly [GO:0051382] locus:2037488; AT1G78790 Pfam:DUF2008 OSJNBb0011N17.11 protein (Os04g0481500 protein) Q7XUQ1 Q7XUQ1_ORYSJ OSJNBb0011N17.11 Os04g0481500 OSNPB_040481500 ENOG411E6JQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E6JP T11I11.10,SAUR14,SAUR6 Q9SW57,Q9T0J2,Q9SKP2,A0A1P8AYM3 Q9SW57_ARATH,Q9T0J2_ARATH,Q9SKP2_ARATH,A0A1P8AYM3_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34770) (Uncharacterized protein T11I11.10),At4g38840 (Auxin-induced protein-like) (SAUR-like auxin-responsive protein family) (Uncharacterized protein At4g38840),At2g21210 (Putative auxin-regulated protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family 11318,11111,11004,18700 SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34770) (Uncharacterized protein T11I11.10),At4g38840 (Auxin-induced protein-like) (SAUR-like auxin-responsive protein family) (Uncharacterized protein At4g38840),At2g21210 (Putative auxin-regulated protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family response to auxin [GO:0009733],plasma membrane [GO:0005886]; response to auxin [GO:0009733]; response to cold [GO:0009409],response to auxin [GO:0009733]; response to chitin [GO:0010200] locus:2116860;,locus:2141772;,locus:2047007; AT4G34770,AT4G38840,AT2G21210 auxin-induced protein Os08g0118500 protein Q6ZJ50 Q6ZJ50_ORYSJ Os08g0118500 OJ1005_B05.16 OsJ_25839 OSNPB_080118500 ENOG411E6JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pirin NA NA NA NA NA NA NA ENOG411E6JX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0258800 protein (cDNA, clone: J100071D03, full insert sequence) Q6K249 Q6K249_ORYSJ Os02g0258800 B1178F07.4 OSJNBa0060K08.14 OSNPB_020258800 ENOG411E6J7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6J6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0426800 protein A0A0N7KKT6 A0A0N7KKT6_ORYSJ Os05g0426800 OSNPB_050426800 ENOG411E6J5 EC1.4 Q9T039 EC14_ARATH Egg cell-secreted protein 1.4 FUNCTION: Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival. {ECO:0000269|PubMed:23180860}. 13613 Egg cell-secreted protein 1.4 cytoplasmic vesicle [GO:0031410]; extracellular region [GO:0005576]; vesicle [GO:0031982]; double fertilization forming a zygote and endosperm [GO:0009567]; regulation of double fertilization forming a zygote and endosperm [GO:0080155]; regulation of protein localization to cell surface [GO:2000008]; single fertilization [GO:0007338] DEVELOPMENTAL STAGE: Confined to the egg cell before fertilization, but disappears upon gamete fusion. Also present in zygotes and early embryos. {ECO:0000269|PubMed:23180860}. TISSUE SPECIFICITY: Restricted to female reproductive tissues, specifically accumulating in storage vesicles of the unfertilized egg cell. {ECO:0000269|PubMed:23180860}. locus:2136293; AT4G39340 Pfam:DUF1278 NA NA NA NA NA NA NA ENOG411E6J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING EL5-like (Os06g0535200 protein) (cDNA clone:002-154-F07, full insert sequence) Q5Z5F5 Q5Z5F5_ORYSJ Os06g0535200 OSJNBa0001B21.19 OSNPB_060535200 ENOG411E6J3 F24G24.80 Q9SV93,F4JLM2 Q9SV93_ARATH,F4JLM2_ARATH AT4g10280/F24G24_80 (RmlC-like cupins superfamily protein) (Uncharacterized protein AT4g10280) (Uncharacterized protein F24G24.80),RmlC-like cupins superfamily protein 15788,14074 AT4g10280/F24G24_80 (RmlC-like cupins superfamily protein) (Uncharacterized protein AT4g10280) (Uncharacterized protein F24G24.80),RmlC-like cupins superfamily protein locus:2122809;,locus:2122819; AT4G10280,AT4G10290 Ethanolamine utilisation protein EutQ NA NA NA NA NA NA NA ENOG411E6J2 OHP1 O81208 OHP1_ARATH Light-harvesting complex-like protein OHP1, chloroplastic (High-light-induced protein) (AtHLIP) (One helix protein) (One helix protein 1) (Protein PIGMENT DEFECTIVE 335) Pigment defective embryo-D. Meinke-2011 FUNCTION: May play a photoprotective role in the thylakoid membrane in response to light stress. {ECO:0000305|PubMed:10794534}. 12010 Light-harvesting complex-like protein OHP1, chloroplastic (High-light-induced protein) (AtHLIP) (One helix protein) (One helix protein 1) (Protein PIGMENT DEFECTIVE 335) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; chlorophyll binding [GO:0016168]; substrate-specific transmembrane transporter activity [GO:0022891]; circadian rhythm [GO:0007623]; photosynthesis [GO:0015979]; protein-chromophore linkage [GO:0018298]; response to high light intensity [GO:0009644]; transmembrane transport [GO:0055085] locus:2185193; AT5G02120 One helix protein Os05g0292800 protein (cDNA clone:001-029-H03, full insert sequence),One helix protein, putative, expressed (Os12g0480100 protein) (cDNA clone:J013131C05, full insert sequence) Q0DJF5,Q2QQX1 Q0DJF5_ORYSJ,Q2QQX1_ORYSJ Os05g0292800 Os05g0292800 OsJ_17921 OSNPB_050292800,Os12g0480100 LOC_Os12g29570 Os12g0480100 OsJ_36086 OSNPB_120480100 ENOG411E6J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Dof-type zinc finger protein 17 (Os12g0590700 protein) (Fragment) C7DQE7 C7DQE7_ORYSJ Os12g0590700 OSNPB_120590700 ENOG411E6J9 SGO2,AtSGO2 Q0WTB8,A0A1P8BFE9 SGO2_ARATH,A0A1P8BFE9_ARATH SHUGOSHIN 2 (AtSGO2),Shugoshin C terminus FUNCTION: Dispensable for both meiotic and mitotic cell cycle progression (PubMed:24206843, PubMed:23884434). Required with SGO1 for full protection of centromeric cohesion during anaphase I (PubMed:24206843). Required to prevent precocious release of pericentromeric cohesins during meiosis (PubMed:24206843). Acts redundantly to SGO1 (PubMed:24506176). {ECO:0000269|PubMed:23884434, ECO:0000269|PubMed:24206843, ECO:0000269|PubMed:24506176}. MISCELLANEOUS: Shugoshin is Japanese for guardian spirit. {ECO:0000305|PubMed:24206843}.; MISCELLANEOUS: Knock-down mutants show no meiotic or vegetative defects and no reduced fertility (PubMed:24206843, PubMed:23884434). Sgo1 and sgo2 double mutants are almost completely sterile and show a premature separation of sister chromatids at anaphase I (PubMed:24506176). {ECO:0000269|PubMed:23884434, ECO:0000269|PubMed:24206843, ECO:0000269|PubMed:24506176}. 53706,50968 SHUGOSHIN 2 (AtSGO2),Shugoshin C terminus chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; maintenance of meiotic sister chromatid cohesion [GO:0034090],chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; meiotic chromosome segregation [GO:0045132] locus:2179954; AT5G04320 Shugoshin C terminus NA NA NA NA NA NA NA ENOG411E6J8 F26A9.19 Q9C9I0 Q9C9I0_ARATH At1g71430 (Uncharacterized protein At1g71430/F26A9_19) (Uncharacterized protein F26A9.19) 17304 At1g71430 (Uncharacterized protein At1g71430/F26A9_19) (Uncharacterized protein F26A9.19) locus:2825354; AT1G71430 NA Os01g0617800 protein (cDNA clone:J033037H17, full insert sequence) Q5ZDI8 Q5ZDI8_ORYSJ Os01g0617800 Os01g0617800 OsJ_02622 OSNPB_010617800 P0686E09.31 ENOG411ED3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAAX protease self-immunity NA NA NA NA NA NA NA ENOG411EA46 GSTF4 Q84TK0,A0A1P8AMT5,B3H520 GSTF4_ARATH,A0A1P8AMT5_ARATH,B3H520_ARATH Glutathione S-transferase F4 (AtGSTF4) (EC 2.5.1.18) (GST class-phi member 4) (Glutathione S-transferase 31),Glutathione S-transferase F4 FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G02950-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 28701,30029,25058 Glutathione S-transferase F4 (AtGSTF4) (EC 2.5.1.18) (GST class-phi member 4) (Glutathione S-transferase 31),Glutathione S-transferase F4 cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],transferase activity [GO:0016740] locus:2024765; AT1G02950 Glutathione S-transferase NA NA NA NA NA NA NA ENOG411EA47 MQB2.22 Q9FM06 Q9FM06_ARATH Basic-leucine zipper transcription factor K (Uncharacterized protein At5g62900) 17630 Basic-leucine zipper transcription factor K (Uncharacterized protein At5g62900) locus:2170693; AT5G62900 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EA44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0290200 protein A0A0P0XE09 A0A0P0XE09_ORYSJ Os08g0290200 OSNPB_080290200 ENOG411EA45 CRK12,CRK14 O65472,Q8H199,A0A1P8B4R8 CRK12_ARATH,CRK14_ARATH,A0A1P8B4R8_ARATH Putative cysteine-rich receptor-like protein kinase 12 (Cysteine-rich RLK12) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 14 (Cysteine-rich RLK14) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 12 2.7.11.- 77405,73938,55872 Putative cysteine-rich receptor-like protein kinase 12 (Cysteine-rich RLK12) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 14 (Cysteine-rich RLK14) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 12 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] AT4G23200,AT4G23220 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EA48 F4ICH9 F4ICH9_ARATH NAD(P)-binding Rossmann-fold superfamily protein 35826 NAD(P)-binding Rossmann-fold superfamily protein catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2031255; AT1G25460 Polysaccharide biosynthesis protein NA NA NA NA NA NA NA ENOG411EA4P REM21 Q9SZ05,Q1PES7,Q9M8K2,A0A1I9LTU1,F4J9Q0 Y3440_ARATH,Y3622_ARATH,REM21_ARATH,A0A1I9LTU1_ARATH,F4J9Q0_ARATH B3 domain-containing protein At4g34400,B3 domain-containing protein At3g06220,B3 domain-containing protein REM21 (Protein REPRODUCTIVE MERISTEM 21),AP2/B3-like transcriptional factor family protein 45678,19411,37423,35720,42661 B3 domain-containing protein At4g34400,B3 domain-containing protein At3g06220,B3 domain-containing protein REM21 (Protein REPRODUCTIVE MERISTEM 21),AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2116219;,locus:2082480;,locus:2082405; AT4G34400,AT3G06220,AT3G06160 B3 NA NA NA NA NA NA NA ENOG411EA4Q POT13,KUP5 Q8LPL8,A0A1P8B960 POT13_ARATH,A0A1P8B960_ARATH Potassium transporter 13 (AtKT5) (AtPOT13),Potassium transporter FUNCTION: Probable potassium transporter.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. 94738,69333 Potassium transporter 13 (AtKT5) (AtPOT13),Potassium transporter integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; potassium ion transmembrane transporter activity [GO:0015079],integral component of membrane [GO:0016021]; potassium ion transmembrane transporter activity [GO:0015079] locus:2134153; AT4G33530 K+ potassium transporter NA NA NA NA NA NA NA ENOG411EA4V NAT5,NAT6 Q8RWE9,Q27GI3 NAT5_ARATH,NAT6_ARATH Nucleobase-ascorbate transporter 5 (AtNAT5),Nucleobase-ascorbate transporter 6 (AtNAT6) R-ATH-196836; 57321,57580 Nucleobase-ascorbate transporter 5 (AtNAT5),Nucleobase-ascorbate transporter 6 (AtNAT6) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085],cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Weakly expressed in the vasculature of developing leaves. {ECO:0000269|PubMed:16982705}.,TISSUE SPECIFICITY: Expressed in the apical region of cotyledons 4 days after imbibition (DAI). Expressed in the whole vasculature at 12 DAI. Expressed in the root central cylinder and lateral root primordia. Expressed in the vasculature of sepals, filaments, carpels and developing siliques. {ECO:0000269|PubMed:16982705, ECO:0000269|Ref.1}. locus:2158829;,locus:2170783; AT5G49990,AT5G62890 Permease family NA NA NA NA NA NA NA ENOG411EA4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EA4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAH NA NA NA NA NA NA NA ENOG411EA4B F28K20.6 Q9SA06 Q9SA06_ARATH F28K20.6 protein (Polyadenylate-binding protein 1-B-binding protein) (Uncharacterized protein At1g31130) (Uncharacterized protein F28K20.6) 35736 F28K20.6 protein (Polyadenylate-binding protein 1-B-binding protein) (Uncharacterized protein At1g31130) (Uncharacterized protein F28K20.6) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:2029529; AT1G31130 NA NA NA NA NA NA NA NA ENOG411EA4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA4A MS1,MS2 O50008,Q9SRV5 METE1_ARATH,METE2_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 (EC 2.1.1.14) (Cobalamin-independent methionine synthase 1) (AtMS1) (Vitamin-B12-independent methionine synthase 1),5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 (EC 2.1.1.14) (Cobalamin-independent methionine synthase 2) (AtMS2) FUNCTION: Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. {ECO:0000269|PubMed:15024005}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetE route): step 1/1. ARA:AT5G17920-MONOMER;,ARA:AT3G03780-MONOMER;MetaCyc:AT3G03780-MONOMER; 2.1.1.14; 2.1.1.14 84357,84584 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 (EC 2.1.1.14) (Cobalamin-independent methionine synthase 1) (AtMS1) (Vitamin-B12-independent methionine synthase 1),5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 (EC 2.1.1.14) (Cobalamin-independent methionine synthase 2) (AtMS2) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; membrane [GO:0016020]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [GO:0003871]; copper ion binding [GO:0005507]; methionine synthase activity [GO:0008705]; zinc ion binding [GO:0008270]; homocysteine metabolic process [GO:0050667]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [GO:0003871]; methionine synthase activity [GO:0008705]; zinc ion binding [GO:0008270]; homocysteine metabolic process [GO:0050667]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, siliques and seeds. {ECO:0000269|PubMed:15024005}.,TISSUE SPECIFICITY: Expressed in leaves, stems and siliques. {ECO:0000269|PubMed:15024005}. locus:2170318;,locus:2079434; AT5G17920,AT3G03780 Cobalamin-independent synthase Catalytic domain Os12g0623900 protein (Fragment) A0A0P0YCC8 A0A0P0YCC8_ORYSJ Os12g0623900 OSNPB_120623900 ENOG411EA4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EA4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxidoreductase molybdopterin binding domain NA NA NA NA NA NA NA ENOG411EA4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA4E Q1G324,A0A1P8AT86 Q1G324_ARATH,A0A1P8AT86_ARATH Isocitrate/isopropylmalate dehydrogenase family protein ARA:AT1G80555-MONOMER; 13753,21277 Isocitrate/isopropylmalate dehydrogenase family protein chloroplast stroma [GO:0009570]; integral component of membrane [GO:0016021]; 3-isopropylmalate dehydrogenase activity [GO:0003862]; leucine biosynthetic process [GO:0009098],oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616] locus:4010713608; AT1G80555 Isocitrate/isopropylmalate dehydrogenase NA NA NA NA NA NA NA ENOG411EA4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA4K BCHC1,BCHC2 F4JD14,F4IG73,A0A1I9LM19 BCHC1_ARATH,BCHC2_ARATH,A0A1I9LM19_ARATH BEACH domain-containing protein C1 (BEACH-domain homolog C1),BEACH domain-containing protein C2 (BEACH-domain homolog C2),Beige/BEACH domain protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:25618824}. FUNCTION: May act as a negative factor in protein storage vacuole (PSV) trafficking regulation and plant effector triggered immunity (ETI). Negatively regulated upon interaction with GSF12, and also probably by BCHB. Required for ETI, but not for cell death. {ECO:0000269|PubMed:25618824}. 213254,328092,219140 BEACH domain-containing protein C1 (BEACH-domain homolog C1),BEACH domain-containing protein C2 (BEACH-domain homolog C2),Beige/BEACH domain protein endomembrane system [GO:0012505]; plasmodesma [GO:0009506],endomembrane system [GO:0012505] locus:2100942;,locus:2043679; AT3G60920,AT2G45540 AT2G45540 (E 0.0) WD-40 repeat family protein beige-related NA NA NA NA NA NA NA ENOG411EA4H Q2HIW3,Q93V70,Q9SYN7 Q2HIW3_ARATH,Q93V70_ARATH,Q9SYN7_ARATH At1g76590 (PLATZ transcription factor family protein),At1g21000/F9H16_1 (PLATZ transcription factor family protein),F9H16.1 protein (PLATZ transcription factor family protein) (Uncharacterized protein F9H16.1) 27780,27628,27343 At1g76590 (PLATZ transcription factor family protein),At1g21000/F9H16_1 (PLATZ transcription factor family protein),F9H16.1 protein (PLATZ transcription factor family protein) (Uncharacterized protein F9H16.1) locus:2011721;,locus:2037405; AT1G76590,AT1G21000 PLATZ transcription factor NA NA NA NA NA NA NA ENOG411EA4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os06g0659700 protein A3BE96 A3BE96_ORYSJ Os06g0659700 OsJ_22234 OSNPB_060659700 ENOG411EA4N NVL A0A1P8ARF3,A0A1P8ARG1,F4HW09 A0A1P8ARF3_ARATH,A0A1P8ARG1_ARATH,F4HW09_ARATH No vein-like protein 69258,73316,84092 No vein-like protein nucleus [GO:0005634]; embryo development ending in seed dormancy [GO:0009793]; leaf vascular tissue pattern formation [GO:0010305]; root development [GO:0048364] locus:2200013; AT1G08300 NA NA NA NA NA NA NA NA ENOG411EA4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ELMO/CED-12 family Os12g0126200 protein (cDNA clone:J013129J01, full insert sequence),Os11g0129600 protein Q2QYA8,A0A0N7KSD4 Q2QYA8_ORYSJ,A0A0N7KSD4_ORYSJ Os12g0126200 LOC_Os12g03270 Os12g0126200 OsJ_35079 OSNPB_120126200,Os11g0129600 OSNPB_110129600 ENOG411DXU1 Q6NMB4,A0A1P8B5H4,A0A1P8B5H2 Q6NMB4_ARATH,A0A1P8B5H4_ARATH,A0A1P8B5H2_ARATH At4g28020 (Uncharacterized protein At4g28015) (tRNA-thr(GGU) m(6)t(6)A37 methyltransferase),tRNA-thr(GGU) m(6)t(6)A37 methyltransferase ARA:GQT-2744-MONOMER; 39171,29164,30621 At4g28020 (Uncharacterized protein At4g28015) (tRNA-thr(GGU) m(6)t(6)A37 methyltransferase),tRNA-thr(GGU) m(6)t(6)A37 methyltransferase methyltransferase activity [GO:0008168],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2132952; AT4G28020 Uncharacterised protein family UPF0066 Os09g0428900 protein (VirR/VirH-like protein) (cDNA clone:J023143B18, full insert sequence) Q69L12 Q69L12_ORYSJ Os09g0428900 Os09g0428900 OSNPB_090428900 P0689B09.13 ENOG411DXU0 Q94K63,B3H4P9,A0A1I9LSP3,A0A1I9LSP2 Q94K63_ARATH,B3H4P9_ARATH,A0A1I9LSP3_ARATH,A0A1I9LSP2_ARATH Adenine phosphoribosyltransferase-like protein, putative (DUF2358) (Uncharacterized protein At3g04890),AT3G04890 protein (Adenine phosphoribosyltransferase-like protein, putative (DUF2358)),Adenine phosphoribosyltransferase-like protein, putative (DUF2358) 24432,24978,25532,24985 Adenine phosphoribosyltransferase-like protein, putative (DUF2358) (Uncharacterized protein At3g04890),AT3G04890 protein (Adenine phosphoribosyltransferase-like protein, putative (DUF2358)),Adenine phosphoribosyltransferase-like protein, putative (DUF2358) transferase activity, transferring glycosyl groups [GO:0016757] locus:2114875; AT3G04890 Uncharacterized conserved protein (DUF2358) NA NA NA NA NA NA NA ENOG411DXU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh Os05g0147300 protein A0A0P0WI02 A0A0P0WI02_ORYSJ Os05g0147300 OSNPB_050147300 ENOG411DXU5 T3M22.5 Q9C535 Q9C535_ARATH Metallo-hydrolase/oxidoreductase superfamily protein (Uncharacterized protein At1g29700; T3M22.5) (Uncharacterized protein F15D2.25) (Uncharacterized protein T3M22.5) 38151 Metallo-hydrolase/oxidoreductase superfamily protein (Uncharacterized protein At1g29700; T3M22.5) (Uncharacterized protein F15D2.25) (Uncharacterized protein T3M22.5) chloroplast [GO:0009507]; hydrolase activity [GO:0016787] locus:2013723; AT1G29700 Inherit from COG: Hydrolase Expressed protein (Os12g0641300 protein) (cDNA clone:006-204-B08, full insert sequence) Q2QLI3 Q2QLI3_ORYSJ LOC_Os12g44370 Os12g0641300 OsJ_37033 OSNPB_120641300 ENOG411DXU4 ARF3 P40940 ARF3_ARATH ADP-ribosylation factor 3 (AtARF3) (Protein ARF-LIKE 1) (AtARL1) FUNCTION: GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. R-ATH-6811440; 20242 ADP-ribosylation factor 3 (AtARF3) (Protein ARF-LIKE 1) (AtARL1) Golgi stack [GO:0005795]; membrane [GO:0016020]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; protein transport [GO:0015031]; response to cadmium ion [GO:0046686]; small GTPase mediated signal transduction [GO:0007264]; vesicle-mediated transport [GO:0016192] locus:2827399; AT2G24765 ADP-ribosylation factor Os08g0248900 protein (Putative ADP-ribosylation factor 3) (cDNA clone:J033051O05, full insert sequence) Q6YW27 Q6YW27_ORYSJ Os08g0248900 OSJNBa0012K14.4 OSJNBb0003H03.26 OSNPB_080248900 ENOG411DXU9 ''cytochrome P450,C7A10.20 A2RVN3,Q9SZT7,O23154,Q0WVW6,Q9SZT6 A2RVN3_ARATH,Q9SZT7_ARATH,O23154_ARATH,Q0WVW6_ARATH,Q9SZT6_ARATH At1g66540 (Cytochrome P450 superfamily protein),Cytochrome P450, family 81, subfamily D, polypeptide 8 (Cytochrome P450-like protein),Cytochrome P450, family 81, subfamily D, polypeptide 3 (Cytochrome P450-like protein),Cytochrome P450 superfamily protein (Uncharacterized protein At1g66540),Cytochrome P450, family 81, subfamily D, polypeptide 2 (Cytochrome p450-like protein) ARA:AT1G66540-MONOMER;,ARA:AT4G37370-MONOMER;,ARA:AT4G37360-MONOMER; 43726,56198,55788,36713,56191 At1g66540 (Cytochrome P450 superfamily protein),Cytochrome P450, family 81, subfamily D, polypeptide 8 (Cytochrome P450-like protein),Cytochrome P450, family 81, subfamily D, polypeptide 3 (Cytochrome P450-like protein),Cytochrome P450 superfamily protein (Uncharacterized protein At1g66540),Cytochrome P450, family 81, subfamily D, polypeptide 2 (Cytochrome p450-like protein) membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; response to karrikin [GO:0080167]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2028972;,locus:2126342;,locus:2115050;,locus:2126332; AT1G66540,AT4G37370,AT4G37340,AT4G37360 cytochrome P450 NA NA NA NA NA NA NA ENOG411DXUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2985) Os03g0299800 protein,Os11g0109633 protein,Os03g0299800 protein (Fragment),Os02g0703450 protein Q10MQ4,H2KW45,A0A0P0VWF7,A0A0P0VNT2 Q10MQ4_ORYSJ,H2KW45_ORYSJ,A0A0P0VWF7_ORYSJ,A0A0P0VNT2_ORYSJ Os03g0299800 LOC_Os03g18790 Os03g0299800 OsJ_10515 OSNPB_030299800,Os11g0109633 LOC_Os11g01842 OSNPB_110109633,Os03g0299800 OSNPB_030299800,Os02g0703450 OSNPB_020703450 ENOG411DXUA IQ-domain 11 Q9LYR0 Q9LYR0_ARATH IQ-domain 11 (Uncharacterized protein At5g13460) (Uncharacterized protein At5g13460; T22N19_110) (Uncharacterized protein T22N19_110) 50821 IQ-domain 11 (Uncharacterized protein At5g13460) (Uncharacterized protein At5g13460; T22N19_110) (Uncharacterized protein T22N19_110) plasma membrane [GO:0005886] locus:2181635; AT5G13460 IQ-domain Os05g0100008 protein,Os03g0355700 protein (Fragment) A3CBL1,A0A0P0VXK5 A3CBL1_ORYSJ,A0A0P0VXK5_ORYSJ Os05g0100008 OsJ_34000 OSNPB_050100008,Os03g0355700 OSNPB_030355700 ENOG411DXUN AUR3 O64629,A0A1P8AY43 AUR3_ARATH,A0A1P8AY43_ARATH Serine/threonine-protein kinase Aurora-3 (AtAur3) (EC 2.7.11.1) (Aurora-like kinase 3),Ataurora3 FUNCTION: Phosphorylates in vitro histone H3 at 'Ser-10' (H3S10ph) and 'Ser-28' (H3S28ph), but not at 'Thr-3' (H3T3ph) or 'Thr-11' (H3T11ph). Colocalizes with phosphorylated histone H3 during mitosis. Associates with cytoskeletal structures that are necessary for cytokinesis and with the microtubule spindle. {ECO:0000269|PubMed:16028112, ECO:0000269|PubMed:17087760}. MISCELLANEOUS: Overexpression of AUR3 induces mitotic spindle defects, but the distribution of phosphorylation of histone H3 on the chromosome is not affected. 2.7.11.1 33119,29354 Serine/threonine-protein kinase Aurora-3 (AtAur3) (EC 2.7.11.1) (Aurora-like kinase 3),Ataurora3 chromosome passenger complex [GO:0032133]; chromosome, centromeric region [GO:0000775]; condensed nuclear chromosome, centromeric region [GO:0000780]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; spindle [GO:0005819]; spindle microtubule [GO:0005876]; spindle midzone [GO:0051233]; ATP binding [GO:0005524]; histone kinase activity (H3-S10 specific) [GO:0035175]; histone kinase activity (H3-S28 specific) [GO:0044022]; chromosome segregation [GO:0007059]; histone H3-S10 phosphorylation [GO:0043987]; histone H3-S28 phosphorylation [GO:0043988]; histone phosphorylation [GO:0016572]; mitotic spindle organization [GO:0007052]; regulation of cytokinesis [GO:0032465],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; chromosome segregation [GO:0007059]; microtubule cytoskeleton organization [GO:0000226]; mitotic cell cycle [GO:0000278]; regulation of cytokinesis [GO:0032465] TISSUE SPECIFICITY: Abundant in roots, flowers and flower buds, low or absent in expanded leaves, stems and siliques. {ECO:0000269|PubMed:15722465}. locus:2043624; AT2G45490 serine threonine-protein kinase Os03g0765000 protein (Serine/threonine-protein kinase 12, putative, expressed) (cDNA clone:J033074N13, full insert sequence) Q10EP9 Q10EP9_ORYSJ LOC_Os03g55620 Os03g0765000 OSNPB_030765000 ENOG411DXUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) (Fragment),Os10g0344000 protein Q7XFI4,Q0IYA7,A0A0P0XSZ5,A0A0P0XTH3 Q7XFI4_ORYSJ,Q0IYA7_ORYSJ,A0A0P0XSZ5_ORYSJ,A0A0P0XTH3_ORYSJ Os10g0344900 LOC_Os10g20450 Os10g0344900 OSJNBa0045C13.2 OSJNBb0052C09.16 OSNPB_100344900,Os10g0345100 OSNPB_100345100,Os10g0344000 OSNPB_100344000,Os10g0344500 OSNPB_100344500 ENOG411DXUS PDV1 Q9FK13 PDV1_ARATH Plastid division protein PDV1 (Protein PLASTID DIVISION1) DISRUPTION PHENOTYPE: Reduced number of constricted and large chloroplasts. {ECO:0000269|PubMed:16998069}. Fewer number of chloroplasts in the leaf mesophyll cells. Chloroplasts were constricted and larger than those observed in the WT.,More severe phenotype than each of the single mutants leaf mesophyll cells contained only one or two chloroplasts usually constricted. Large, constricted chloroplasts-K. Osteryoung-2006 FUNCTION: Component of the plastid division machinery. Required to mediate the recruitment of ARC5 at the midplastid constriction site in the cytoplasm. {ECO:0000269|PubMed:16998069}. 30675 Plastid division protein PDV1 (Protein PLASTID DIVISION1) chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; chloroplast fission [GO:0010020] TISSUE SPECIFICITY: Expressed in young developing leaves, root tips, shoot apices, and flower buds (sepals, petals, stamens, and pistils), but not in developed tissues. {ECO:0000269|PubMed:16998069}. locus:2154262; AT5G53280 Plastid division protein Os06g0506000 protein (cDNA clone:002-137-H12, full insert sequence),Os02g0264300 protein (cDNA clone:J013105K02, full insert sequence),Os01g0224200 protein Q654C8,Q6EPA2,Q5NAQ2 Q654C8_ORYSJ,Q6EPA2_ORYSJ,Q5NAQ2_ORYSJ Os06g0506000 Os06g0506000 OSJNBb0026G06.13 OSNPB_060506000,P0006C08.2-1 Os02g0264300 OsJ_06162 OSJNBa0011J03.48-1 OSNPB_020264300,Os01g0224200 OsJ_00941 OSNPB_010224200 P0417G05.34 ENOG411DXUR ORC5 Q6EWX0,A0A1P8B6D3 ORC5_ARATH,A0A1P8B6D3_ARATH Origin of replication complex subunit 5 (AtORC5),Origin recognition complex protein 5 Embryo defective; Preglobular-D. Meinke-2008 FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. {ECO:0000250|UniProtKB:O43913}. R-ATH-68616;R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69298; 60638,64157 Origin of replication complex subunit 5 (AtORC5),Origin recognition complex protein 5 nuclear origin of replication recognition complex [GO:0005664]; origin recognition complex [GO:0000808]; ATP binding [GO:0005524]; DNA replication origin binding [GO:0003688]; DNA replication [GO:0006260]; DNA replication initiation [GO:0006270],nucleus [GO:0005634]; origin recognition complex [GO:0000808]; DNA replication [GO:0006260]; response to sucrose [GO:0009744] TISSUE SPECIFICITY: Follow a cell-cycle regulation with a peak at the G1/S-phase (PubMed:16179646). Mostly expressed in flower buds and cauline leaves, and, to a lower exent, in roots, leaves and stems (PubMed:16179646). Expressed at low levels ubiquitously (PubMed:15358564). {ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}. locus:2123934; AT4G29910 origin recognition complex Origin of replication complex subunit 1 (OsORC1) Q10CI8 ORC5_ORYSJ ORC5 LOC_Os03g55200 Os03g0759500 OsJ_12664 OSJNBb0048A17.14 FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. {ECO:0000250|UniProtKB:O43913}. ENOG411DXUP LOB Q9FML4 LOB_ARATH Protein LATERAL ORGAN BOUNDARIES (ASYMMETRIC LEAVES 2-like protein 4) (AS2-like protein 4) FUNCTION: Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. 20227 Protein LATERAL ORGAN BOUNDARIES (ASYMMETRIC LEAVES 2-like protein 4) (AS2-like protein 4) multicellular organism development [GO:0007275]; organ boundary specification between lateral organs and the meristem [GO:0010199] TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}. locus:2161982; AT5G63090 Protein LATERAL ORGAN LOB domain protein (Os01g0169400 protein) (Putative LOB domain protein 25) (cDNA clone:001-127-G05, full insert sequence) (p0028E10.30 protein) Q9AS62 Q9AS62_ORYSJ P0028E10.30 CRLL4 Os01g0169400 OJ1276_B06.29 OSNPB_010169400 ENOG411DXUW PAE6 Q84JS1,A0A1I9LQL7 PAE6_ARATH,A0A1I9LQL7_ARATH Pectin acetylesterase 6 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:25115560}. FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000250|UniProtKB:B9DFR3}.,FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. 3.1.1.- 46479,50638 Pectin acetylesterase 6 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] locus:2097973; AT3G62060 Pectinacetylesterase family NA NA NA NA NA NA NA ENOG411DXUU Q9C5G6,F4I670 Q9C5G6_ARATH,F4I670_ARATH Peptidase C15, pyroglutamyl peptidase I-like protein (Uncharacterized protein At1g23430) (Uncharacterized protein At1g23440),Peptidase C15, pyroglutamyl peptidase I-like protein 23618,9813 Peptidase C15, pyroglutamyl peptidase I-like protein (Uncharacterized protein At1g23430) (Uncharacterized protein At1g23440),Peptidase C15, pyroglutamyl peptidase I-like protein cytosol [GO:0005829]; pyroglutamyl-peptidase activity [GO:0016920]; proteolysis [GO:0006508] locus:2028906; AT1G23440 Pyrrolidone-carboxylate NA NA NA NA NA NA NA ENOG411EE3A Root System Architecture 1 A0A1P8B6P3,F4JL94 A0A1P8B6P3_ARATH,F4JL94_ARATH Tyrosine transaminase family protein R-ATH-71182; 47358,49936 Tyrosine transaminase family protein pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520] locus:2121382; AT4G28410 Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411EIIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DW58 PVA41,MAMI Q1ECE0,A0A1P8BD09 VAP41_ARATH,A0A1P8BD09_ARATH Vesicle-associated protein 4-1 (Plant VAP homolog 4-1) (AtPVA41) (Protein MEMBRANE-ASSOCIATED MANNITOL-INDUCED) (AtMAMI) (VAMP-associated protein 4-1),Membrane-associated mannitol-induced FUNCTION: May play a role in vesicle trafficking. {ECO:0000250}. 30255,21252 Vesicle-associated protein 4-1 (Plant VAP homolog 4-1) (AtPVA41) (Protein MEMBRANE-ASSOCIATED MANNITOL-INDUCED) (AtMAMI) (VAMP-associated protein 4-1),Membrane-associated mannitol-induced endoplasmic reticulum membrane [GO:0005789]; plasma membrane [GO:0005886]; response to osmotic stress [GO:0006970],endoplasmic reticulum membrane [GO:0005789] locus:2166582; AT5G54110 vesicle-associated protein 4-2-like 27k vesicle-associated membrane protein-associated protein-like (Os08g0141300 protein) (cDNA clone:001-014-D04, full insert sequence) Q6YZ10 Q6YZ10_ORYSJ Os08g0141300 OJ1368_G08.30 OSNPB_080141300 P0473D02.15 ENOG411DW59 CYP735A2,CYP735A1 Q9ZW95,Q9FF18,A0A1P8AWC5,A0A1P8BDU2 C7352_ARATH,C7351_ARATH,A0A1P8AWC5_ARATH,A0A1P8BDU2_ARATH Cytokinin hydroxylase (EC 1.14.13.-) (Cytochrome P450 35A2),Cytokinin hydroxylase (EC 1.14.13.-) (Cytochrome P450 35A1),Cytochrome P450, family 735, subfamily A, polypeptide 2,Cytochrome P450, family 735, subfamily A, polypeptide 1 FUNCTION: Cytokinin hydroxylase that catalyzes the biosynthesis of trans-zeatin via the isopentenyladenine riboside 5'-monophosphate (iPRMP)-dependent pathway. Can use isopentenyladenosine-5'-monophosphate, isopentenyladenosine-5'-diphosphate and isopentenyladenosine-5'-triphosphate as substrate. {ECO:0000269|PubMed:15280363}. 1.14.13.- 58463,58900,43003,45051 Cytokinin hydroxylase (EC 1.14.13.-) (Cytochrome P450 35A2),Cytokinin hydroxylase (EC 1.14.13.-) (Cytochrome P450 35A1),Cytochrome P450, family 735, subfamily A, polypeptide 2,Cytochrome P450, family 735, subfamily A, polypeptide 1 integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; trans-zeatin biosynthetic process [GO:0033466],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; trans-zeatin biosynthetic process [GO:0033466],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:15280363}.,TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:15280363}. locus:2033656;,locus:2177411; AT1G67110,AT5G38450 cytokinin Os09g0403300 protein,Os08g0429800 protein A0A0P0XMQ9,A0A0P0XG80 A0A0P0XMQ9_ORYSJ,A0A0P0XG80_ORYSJ Os09g0403300 OSNPB_090403300,Os08g0429800 OSNPB_080429800 ENOG411DW54 NDA1,NDA2 Q8GWA1,O80874 NDA1_ARATH,NDA2_ARATH Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial (EC 1.6.5.9) (Internal alternative NADH dehydrogenase NDA1) (Internal non-phosphorylating NAD(P)H dehydrogenase 1) (AtNDI1) (NADH:ubiquinone reductase (non-electrogenic) NDA1),Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial (EC 1.6.5.9) (Internal alternative NADH dehydrogenase NDA2) (NADH:ubiquinone reductase (non-electrogenic) NDA2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:14630960}. FUNCTION: Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane. {ECO:0000250}. ARA:AT1G07180-MONOMER;,ARA:AT2G29990-MONOMER; 1.6.5.9 56628,56503 Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial (EC 1.6.5.9) (Internal alternative NADH dehydrogenase NDA1) (Internal non-phosphorylating NAD(P)H dehydrogenase 1) (AtNDI1) (NADH:ubiquinone reductase (non-electrogenic) NDA1),Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial (EC 1.6.5.9) (Internal alternative NADH dehydrogenase NDA2) (NADH:ubiquinone reductase (non-electrogenic) NDA2) intrinsic component of mitochondrial inner membrane [GO:0031304]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; NADH dehydrogenase activity [GO:0003954]; NADPH dehydrogenase activity [GO:0003959]; cellular response to light stimulus [GO:0071482]; oxidation-reduction process [GO:0055114],intrinsic component of mitochondrial inner membrane [GO:0031304]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; NADPH dehydrogenase activity [GO:0003959]; oxidation-reduction process [GO:0055114] TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, young leaves, stems and flowers and, to a lower extent, in roots and buds. {ECO:0000269|PubMed:12972666, ECO:0000269|PubMed:16258072}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves, stems, buds and flowers. {ECO:0000269|PubMed:12972666, ECO:0000269|PubMed:16258072}. locus:2007427;,locus:2045708; AT1G07180,AT2G29990 NADH dehydrogenase)-like Os07g0564500 protein (Putative NADH dehydrogenase) (cDNA clone:J023089K20, full insert sequence),Os01g0830100 protein (Putative NADH dehydrogenase (Ubiquinone)) (cDNA clone:J023030K24, full insert sequence),Os01g0830100 protein (cDNA clone:J013062I18, full insert sequence) Q8H5X6,Q5QLT6,B7EBZ5 Q8H5X6_ORYSJ,Q5QLT6_ORYSJ,B7EBZ5_ORYSJ OJ1112_E08.115 Os07g0564500 OSNPB_070564500,B1088C09.41-1 P0446G04.14-1 Os01g0830100 OSNPB_010830100,Os01g0830100 OSNPB_010830100 ENOG411DW55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain GRAM domain containing protein, expressed (Os03g0736700 protein) (Putative ABA-responsive protein) (cDNA clone:006-201-F03, full insert sequence) (cDNA clone:006-204-F03, full insert sequence) (cDNA clone:006-310-F11, full insert sequence),Os03g0736700 protein Q84R37,A0A0P0W2R3 Q84R37_ORYSJ,A0A0P0W2R3_ORYSJ OSJNBb0016H12.17 LOC_Os03g52670 Os03g0736700 OSNPB_030736700,Os03g0736700 OSNPB_030736700 ENOG411DW56 TOP1B,TOP1A,TOP1ALPHA Q9FJ79,P30181,F4K3F4,F4K3F5,B3H4K2 TOP1B_ARATH,TOP1A_ARATH,F4K3F4_ARATH,F4K3F5_ARATH,B3H4K2_ARATH DNA topoisomerase 1 beta (EC 5.99.1.2) (DNA topoisomerase 1),DNA topoisomerase 1 alpha (EC 5.99.1.2) (DNA topoisomerase 1) (DNA topoisomerase I) (Protein FASCIATA 5) (Protein MGOUN1),DNA topoisomerase I alpha,DNA binding / DNA topoisomerase type I DISRUPTION PHENOTYPE: Defects in phyllotaxis and plant architecture. Morphological abnormalities of several organs (PubMed:12215507). Defects in cellular development and organization of both the shoot and the root meristem (PubMed:20228247). {ECO:0000269|PubMed:12215507, ECO:0000269|PubMed:20228247}. Irregular patterns of leaf and flower initiation. Normal whorled phyllotaxy of floral organs but flowers with extra sepals and carpels and those with fewer petals and stamens are observed. All mutant inflorescences and individual flowers are twisted spirally. Mutant leaf margins are serrated. Twisted inflorescence stems and leaf margins; Multiple flowers form at single node-T. Takahashi-2002 FUNCTION: Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then rotates around the intact phosphodiester bond on the opposing strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Topoisomerases 1 enzymes (TOP1A and TOP1B) are essential for plant survival (PubMed:12215507). {ECO:0000250|UniProtKB:P11387, ECO:0000269|PubMed:12215507}.,FUNCTION: Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then rotates around the intact phosphodiester bond on the opposing strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Can complement a TOP1-deficient yeast mutant (PubMed:16669064). Plays a critical role in the maintenance of a regular pattern of organ initiation. Topoisomerases I enzymes (TOP1A and TOP1B) are essential for plant survival (PubMed:12215507). Functions together with the stem cell maintenance gene WUSCHEL (WUS) in stem cell regulation. Required to maintain developmentally regulated gene repression. Functions synergistically with chromatin remodeling factors (PubMed:20228247). Is required for the repression of WUS expression in flower development. Plays a role in polycomb group (PcG) protein-mediated histone H3 trimethylation on 'Lys-27' (H3K27me3) at the WUS gene locus. H3K27me3 induces transcriptional repression of WUS. May assist AGAMOUS (AG) in recruiting PcG proteins to WUS locus. Reduces nucleosome density, especially at genes that are targets of PcG proteins (PubMed:25070639). Plays a role in epigenetic silencing. Involved in RNA-directed DNA methylation (RdDM) by promoting Pol V transcription to generate long non-coding RNA transcripts. Is dispensable for Pol IV-mediated small interfering RNA (siRNA) biogenesis. Promotes transposable element (TE) silencing at endogenous RdDM target loci through histone H3 dimethylation of 'Lys-9' (H3K9me2). Promotes the production of Pol V-dependent long non-coding transcripts that facilitate the recruitment of siRNA-AGO4 and AGO4 occupancy at TEs (PubMed:24992598). {ECO:0000250|UniProtKB:P11387, ECO:0000269|PubMed:12215507, ECO:0000269|PubMed:16669064, ECO:0000269|PubMed:20228247, ECO:0000269|PubMed:24992598, ECO:0000269|PubMed:25070639}. MISCELLANEOUS: Eukaryotic topoisomerase I and II can relax both negative and positive supercoils, whereas prokaryotic enzymes relax only negative supercoils. 5.99.1.2; 5.99.1.2 103054,102799,104724,62493,8218 DNA topoisomerase 1 beta (EC 5.99.1.2) (DNA topoisomerase 1),DNA topoisomerase 1 alpha (EC 5.99.1.2) (DNA topoisomerase 1) (DNA topoisomerase I) (Protein FASCIATA 5) (Protein MGOUN1),DNA topoisomerase I alpha,DNA binding / DNA topoisomerase type I membrane [GO:0016020]; nucleolus [GO:0005730]; replication fork protection complex [GO:0031298]; DNA binding [GO:0003677]; DNA topoisomerase type I activity [GO:0003917]; chromatin remodeling [GO:0006338]; chromosome segregation [GO:0007059]; DNA replication [GO:0006260]; DNA topological change [GO:0006265],nucleolus [GO:0005730]; nucleus [GO:0005634]; replication fork protection complex [GO:0031298]; DNA binding [GO:0003677]; DNA topoisomerase type I activity [GO:0003917]; chromosome segregation [GO:0007059]; DNA replication [GO:0006260]; DNA topological change [GO:0006265],chromosome [GO:0005694]; DNA binding [GO:0003677]; DNA topoisomerase type I activity [GO:0003917]; chromatin remodeling [GO:0006338]; DNA topological change [GO:0006265]; embryo development ending in seed dormancy [GO:0009793]; flower morphogenesis [GO:0048439]; leaf morphogenesis [GO:0009965]; meristem structural organization [GO:0009933]; plant organ formation [GO:1905393]; post-embryonic development [GO:0009791]; regulation of meristem growth [GO:0010075]; shoot system morphogenesis [GO:0010016]; stem cell population maintenance [GO:0019827],chromosome [GO:0005694]; DNA binding [GO:0003677]; DNA topoisomerase type I activity [GO:0003917]; DNA topological change [GO:0006265],nucleolus [GO:0005730]; replication fork protection complex [GO:0031298]; DNA binding [GO:0003677]; DNA topoisomerase type I activity [GO:0003917]; chromatin remodeling [GO:0006338]; chromosome segregation [GO:0007059]; DNA replication [GO:0006260]; DNA topological change [GO:0006265] TISSUE SPECIFICITY: Expressed in inflorescence meristems. Expressed in primordia of sepals, petals, stamens, carpels and ovules. Expressed in midstage embryos. {ECO:0000269|PubMed:20228247}. locus:2173862;,locus:2173852;,locus:4515103458; AT5G55310,AT5G55300,AT4G26701 dna topoisomerase Os08g0154600 protein (Putative DNA topoisomerase I) Q84ZL5 Q84ZL5_ORYSJ OJ1066_B03.125 Os08g0154600 OsJ_26075 OSNPB_080154600 ENOG411DW57 PCMP-E72 Q9LNP2 PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630 Legionellosis (05134),RNA degradation (03018),Type I diabetes mellitus (04940),Tuberculosis (05152) 82272 Putative pentatricopeptide repeat-containing protein At1g17630 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondria-nucleus signaling pathway [GO:0031930]; RNA modification [GO:0009451] locus:2007888; AT1G17630 Pentatricopeptide repeat-containing protein Os01g0197450 protein A0A0P0UZ80 A0A0P0UZ80_ORYSJ Os01g0197450 OSNPB_010197450 ENOG411DW50 A0A1P8BAG2,F4K786 A0A1P8BAG2_ARATH,F4K786_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 55079,62259 Tetratricopeptide repeat (TPR)-like superfamily protein locus:2151724; AT5G37590 Inherit from KOG: Kinesin light chain Os04g0278200 protein (Fragment) C7J143,A0A0N7KIR6 C7J143_ORYSJ,A0A0N7KIR6_ORYSJ Os04g0278200 Os04g0278200 OSNPB_040278200,Os04g0278200 OSNPB_040278200 ENOG411DW51 UGLYAH Q8GXV5 UGHY_ARATH (S)-ureidoglycine aminohydrolase (AtUGLYAH) (EC 3.5.3.26) FUNCTION: Involved in the catabolism of purine nucleotides. Can use (S)-2-ureidoglycine as substrate, but not allantoate. The sequential activity of AAH, UGLYAH and UAH allows a complete purine breakdown without the intermediate generation of urea. {ECO:0000269|PubMed:19935661, ECO:0000269|PubMed:20038185, ECO:0000269|PubMed:22493446}. 3.5.3.26; 3.5.3.26 33673 (S)-ureidoglycine aminohydrolase (AtUGLYAH) (EC 3.5.3.26) endoplasmic reticulum [GO:0005783]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ureidoglycine aminohydrolase activity [GO:0071522]; allantoin catabolic process [GO:0000256]; purine nucleobase catabolic process [GO:0006145]; regulation of transcription, DNA-templated [GO:0006355]; ureide catabolic process [GO:0010136] locus:2130459; AT4G17050 Cupin domain Probable (S)-ureidoglycine aminohydrolase (OsUGLYAH) (EC 3.5.3.26) Q7F1K9 UGHY_ORYSJ UGLYAH UGHY Os07g0495000 LOC_Os07g31270 OJ1058_B11.119 OsJ_24321 FUNCTION: Involved in the catabolism of purine nucleotides. The sequential activity of AAH, UGLYAH and UAH allows a complete purine breakdown without the intermediate generation of urea. {ECO:0000269|PubMed:23940254}. ENOG411DW52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0634500 protein (cDNA clone:J023103O13, full insert sequence) B7EJR3 B7EJR3_ORYSJ Os04g0634500 OSNPB_040634500 ENOG411DW53 Q84TG2 Q84TG2_ARATH At3g16350 (Homeodomain-like superfamily protein) 41191 At3g16350 (Homeodomain-like superfamily protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:2094942; AT3G16350 Myb-like DNA-binding domain Os01g0187900 protein (Putative MybSt1) (cDNA clone:J023105I20, full insert sequence) Q5SND9 Q5SND9_ORYSJ Os01g0187900 Os01g0187900 OSNPB_010187900 P0512G09.15 P0695A04.24 ENOG411DW5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) AAA-type ATPase-like (Os07g0192700 protein),AAA-type ATPase-like (Os01g0297200 protein) (cDNA clone:002-149-D07, full insert sequence) Q69S61,Q94IX9 Q69S61_ORYSJ,Q94IX9_ORYSJ Os07g0192700 Os07g0192700 OSJNBa0049I08.22 OSNPB_070192700,Os01g0297200 Os01g0297200 OSJNBa0025P13.20 OSNPB_010297200 ENOG411DW5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nitrate transporter Os01g0748950 protein (Fragment) A0A0P0V856 A0A0P0V856_ORYSJ Os01g0748950 OSNPB_010748950 ENOG411DW5I PAP12 Q8LAP6 PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic (Fibrillin-10) 45765 Probable plastid-lipid-associated protein 12, chloroplastic (Fibrillin-10) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; plastoglobule [GO:0010287] locus:2026052; AT1G51110 plastid-lipid-associated protein 12 Os07g0470700 protein (cDNA clone:J013161M19, full insert sequence) Q0D6K6 Q0D6K6_ORYSJ Os07g0470700 Os07g0470700 OSNPB_070470700 ENOG411DW5J OGG1 Q9FNY7 OGG1_ARATH N-glycosylase/DNA lyase OGG1 [Includes: 8-oxoguanine DNA glycosylase 1 (AtOGG1) (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (AP lyase) (EC 4.2.99.18)] DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions or UV-A irradiation stress. {ECO:0000269|Ref.8}. FUNCTION: Involved in repair of DNA damaged by oxidation by incising DNA at 8-oxoG residues. Excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine (Fapy) from damaged DNA. Has a beta-lyase activity that nicks DNA 3' to the lesion. {ECO:0000269|PubMed:11361340, ECO:0000269|PubMed:11785940, ECO:0000269|PubMed:12627976, ECO:0000269|PubMed:22473985}. MISCELLANEOUS: Transgenic seeds over-expressing OGG1 exhibit enhanced seed longevity associated with reduced DNA damage, enhanced seed tolerance to abiotic stresses and improved germination performance under abiotic stresses. {ECO:0000305|PubMed:22473985}. R-ATH-110329;R-ATH-110331;R-ATH-110357; 3.2.2.-; 4.2.99.18 40283 N-glycosylase/DNA lyase OGG1 [Includes: 8-oxoguanine DNA glycosylase 1 (AtOGG1) (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (AP lyase) (EC 4.2.99.18)] nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; oxidized purine nucleobase lesion DNA N-glycosylase activity [GO:0008534]; base-excision repair [GO:0006284]; DNA repair [GO:0006281]; nucleotide-excision repair [GO:0006289] DEVELOPMENTAL STAGE: Expression is induced during seed desiccation and imbibition. {ECO:0000269|PubMed:22473985}. TISSUE SPECIFICITY: Expressed in stems, roots, rosette and cauline leaves, flowers and seeds. {ECO:0000269|PubMed:11785940, ECO:0000269|PubMed:22473985}. locus:2036957; AT1G21710 N-glycosylase DNA Os02g0553000 protein,Os02g0552600 protein B9F0I4,A0A0P0VKE7 B9F0I4_ORYSJ,A0A0P0VKE7_ORYSJ Os02g0553000 OsJ_07112 OSNPB_020553000,Os02g0552600 OSNPB_020552600 ENOG411DW5K BRN2,BRN1,NAC070 Q9SV87,Q9C878,A0A1P8B997 BRN2_ARATH,BRN1_ARATH,A0A1P8B997_ARATH Protein BEARSKIN2 (NAC domain-containing protein 70) (ANAC070),Protein BEARSKIN1 (NAC domain-containing protein 15) (ANAC015),NAC domain containing protein 70 same as smb-3 single mutant,Columella root cap cells fail to detach.,Root cap cells appear as a mass lacking uniform morphology. Cells can be highly elongated and twisted. Cells fail to stop elongation and to adopt the rigid rectangular morphology of COL cells. When compared with smb-3 the triple mutant has thesame number of complete LRC layers and the appearance of the cells in those layers closely resembles that in smb-3. However partial remains of older LRC layers remain attached to the meristem in the triple mutant giving it a messy appearance. Remains of old LRC cap layers can be found still attached to the root along its whole length.,Same as smb-3 single mutant phenotype,WT phenotype FUNCTION: Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.,FUNCTION: Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. 38946,35253,33497 Protein BEARSKIN2 (NAC domain-containing protein 70) (ANAC070),Protein BEARSKIN1 (NAC domain-containing protein 15) (ANAC015),NAC domain containing protein 70 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; root cap development [GO:0048829]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; root cap development [GO:0048829]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.,DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 1 mm long. {ECO:0000269|PubMed:20197506}. TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.,TISSUE SPECIFICITY: Expressed in the root cap, in both columella (COL) and COL-adjoining lateral root cap (LRC) cells. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. locus:2122804;,locus:2196641; AT4G10350,AT1G33280 nac domain NA NA NA NA NA NA NA ENOG411DW5D Q9C9B4 Q9C9B4_ARATH AT1G73930 protein (Polarity axis stabilization protein) (Uncharacterized protein F2P9.20) 70386 AT1G73930 protein (Polarity axis stabilization protein) (Uncharacterized protein F2P9.20) recycling endosome [GO:0055037]; Rab guanyl-nucleotide exchange factor activity [GO:0017112]; positive regulation of GTPase activity [GO:0043547] locus:2031506; AT1G73930 Pfam:DUF1630 Expressed protein (Os03g0259700 protein) (cDNA, clone: J100029H23, full insert sequence) Q10NT2 Q10NT2_ORYSJ Os03g0259700 LOC_Os03g15390 OSNPB_030259700 ENOG411DW5E PME48,PME63,PPME1 Q9LY19,Q9FKF3,Q84WM7 PME48_ARATH,PME63_ARATH,PPME1_ARATH Probable pectinesterase 48 (PE 48) (EC 3.1.1.11) (Pectin methylesterase 48) (AtPME48),Putative pectinesterase 63 (PE 63) (EC 3.1.1.11) (Pectin methylesterase 63) (AtPME63),Pectinesterase PPME1 (AtPPME1) (PE PPME1) (EC 3.1.1.11) (Pectin methylesterase 9) (AtPME9) (Pectin methylesterase PPME1) (Protein POLLEN SPECIFIC PME 1) DISRUPTION PHENOTYPE: After germination, the pollen tube is sunted, curved and has an irregular morphology. No effect on the morphology of ungerminated pollen grains, on the efficiency of pollen germination, fertilization or seed production. {ECO:0000269|PubMed:16564517}. 20% decrease in pectin methylesterase activity compared to wild-type.,Curved irregular morphology of pollen tubes which are drastically stunted. This phenotype is visible early in the germination process (6h after germination). The pollen tube remains dramatically shorter as growth procedes (tested at 24h after germination).,No obvious differences in the morphology of the ungerminated pollen grains.,Seed production and fertility are similar to those of wild-type.,The average rate of pollen tube elongation is significantly lower than that of wild-type. Abnormal pollen tube growth (no effect on fertility)-V. Citovsky-2006 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}.,FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. Involved in the pollen tube growth and determination of pollen tube morphology. {ECO:0000269|PubMed:16564517}. MISCELLANEOUS: The pectin methylesterase activity is inhibited by PMEI2. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G07410-MONOMER;,ARA:AT5G61680-MONOMER;,ARA:AT1G69940-MONOMER; 3.1.1.11; 3.1.1.11 39337,37324,39142 Probable pectinesterase 48 (PE 48) (EC 3.1.1.11) (Pectin methylesterase 48) (AtPME48),Putative pectinesterase 63 (PE 63) (EC 3.1.1.11) (Pectin methylesterase 63) (AtPME63),Pectinesterase PPME1 (AtPPME1) (PE PPME1) (EC 3.1.1.11) (Pectin methylesterase 9) (AtPME9) (Pectin methylesterase PPME1) (Protein POLLEN SPECIFIC PME 1) apoplast [GO:0048046]; cell wall [GO:0005618]; pollen tube [GO:0090406]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490]; pollen germination [GO:0009846],cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; pollen tube [GO:0090406]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; defense response to Gram-negative bacterium [GO:0050829]; pectin catabolic process [GO:0045490]; pollen tube growth [GO:0009860] TISSUE SPECIFICITY: Expressed in mature pollen grains in the anthers and on the stigma. Found in pollen tubes within the style. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in mature pollen grains in the anthers and on the stigma. Found in pollen tubes within the style. Located at the tip and in the shank of the pollen tube. {ECO:0000269|PubMed:16564517, ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:17971035}. locus:2183334;,locus:2151586;,locus:2196805; AT5G07410,AT5G61680,AT1G69940 pectinesterase NA NA NA NA NA NA NA ENOG411DW5F Q8W0Z5,Q8RWX6,A0A1P8AYH4 Q8W0Z5_ARATH,Q8RWX6_ARATH,A0A1P8AYH4_ARATH At2g46060/T3F17.29 (Transmembrane protein-like protein),Transmembrane protein-like protein (Uncharacterized protein At2g46060),Transmembrane protein-like protein 85040,89791,89149 At2g46060/T3F17.29 (Transmembrane protein-like protein),Transmembrane protein-like protein (Uncharacterized protein At2g46060),Transmembrane protein-like protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2062907; AT2G46060 Protein of unknown function (DUF3522) Os10g0446200 protein (Transmembrane protein, putative, expressed) (cDNA clone:J033107D06, full insert sequence) Q337R9 Q337R9_ORYSJ Os10g0446200 LOC_Os10g30910 OsJ_31697 OSNPB_100446200 ENOG411DW5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles Clathrin light chain 3 Q6Z3A8 CLC3_ORYSJ Os07g0461500 LOC_Os07g27750 P0038F09.33 FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. ENOG411DW5A MSJ1.3 Q9FMG5,Q6DR18,A0A1P8BBZ0 Q9FMG5_ARATH,Q6DR18_ARATH,A0A1P8BBZ0_ARATH Gb|AAD25673.1 (Neuronal PAS domain protein),Neuronal PAS domain protein 57456,56866,57587 Gb|AAD25673.1 (Neuronal PAS domain protein),Neuronal PAS domain protein locus:2173328;,locus:2063130; AT5G64190,AT2G40390 NA Os01g0165100 protein (cDNA clone:001-026-A11, full insert sequence) Q5VQI5 Q5VQI5_ORYSJ Os01g0165100 OsJ_00500 OSNPB_010165100 P0701D05.8 ENOG411DW5B LEW1 Q8H0V2 Q8H0V2_ARATH Uncharacterized protein At1g11760 (Undecaprenyl pyrophosphate synthetase family protein) homozygote lethal. Null: No homozygous mutant plants recovered; Knockdown: Dwarf; Wilted leaves-Z. Gong-2008 28555 Uncharacterized protein At1g11760 (Undecaprenyl pyrophosphate synthetase family protein) dehydrodolichyl diphosphate synthase activity [GO:0045547]; dolichol biosynthetic process [GO:0019408]; endoplasmic reticulum unfolded protein response [GO:0030968]; protein N-linked glycosylation [GO:0006487]; response to low light intensity stimulus [GO:0009645]; response to water deprivation [GO:0009414] locus:4010713435; AT1G11755 NA Expressed protein (Os03g0197000 protein) (cDNA clone:J023079A07, full insert sequence),Os02g0197700 protein (Fragment) Q10QG8,A0A0N7KEV5 Q10QG8_ORYSJ,A0A0N7KEV5_ORYSJ Os03g0197000 LOC_Os03g10080 Os03g0197000 OSNPB_030197000,Os02g0197700 OSNPB_020197700 ENOG411DW5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411DW5X F26I16.4,TRM4,TRM3 Q9FZ83,A0A1P8ANX7,Q0WNQ5,A0A1P8AUN2,A8MQH9 Q9FZ83_ARATH,A0A1P8ANX7_ARATH,Q0WNQ5_ARATH,A0A1P8AUN2_ARATH,A8MQH9_ARATH At1g18620 (At1g18620/F25I16_13) (F26I16.4 protein) (LONGIFOLIA protein),LONGIFOLIA protein,LONGIFOLIA protein (Uncharacterized protein At1g74160) 109427,99818,114380,94241,114116 At1g18620 (At1g18620/F25I16_13) (F26I16.4 protein) (LONGIFOLIA protein),LONGIFOLIA protein,LONGIFOLIA protein (Uncharacterized protein At1g74160) regulation of monopolar cell growth [GO:0051513],plasmodesma [GO:0009506]; regulation of monopolar cell growth [GO:0051513] locus:2037318;,locus:2027473; AT1G18620,AT1G74160 NA Os07g0109400 protein Q7XIU5 Q7XIU5_ORYSJ OJ1567_G09.117 P0585H11.132 Os07g0109400 OsJ_22824 OSNPB_070109400 ENOG411DW5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0776400 protein) Q8H8M2 Q8H8M2_ORYSJ LOC_Os03g56500 Os03g0776400 OSJNBa0070N04.7 OSNPB_030776400 ENOG411DW5Z GTE1,GTE6,IMB1 Q84XV2,Q9FT54,F4J6V6,F4IIX2 GTE1_ARATH,GTE6_ARATH,F4J6V6_ARATH,F4IIX2_ARATH Transcription factor GTE1 (Bromodomain-containing protein GTE1) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E1) (Protein IMBIBITION-INDUCIBLE 1),Transcription factor GTE6 (Bromodomain-containing protein GTE6) (Protein GENERAL TRANSCRIPTION FACTOR GROUP E6) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E6),General transcription factor group E6,Transcription factor GTE6 DISRUPTION PHENOTYPE: Impaired cotyledon greening during germination. Seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination. Mature plants appear normal. {ECO:0000269|PubMed:12969431}.,DISRUPTION PHENOTYPE: Disrupted formation of elliptical leaf laminae in mature leaves. {ECO:0000269|PubMed:16166385}. Round shorter leaves. Defect in transition from juvenile to adult leaf shape.,Rounded shorter leaves. Defect in transition from juvenile to adult leaf shape. Abnormal leaf shape-J. Gray-2005 FUNCTION: Transcription activator that plays a role in the promotion of seed germination by both negatively and positively regulating the abscisic acid (ABA) and phytochrome A (phyA) transduction pathways, respectively. {ECO:0000269|PubMed:12969431}.,FUNCTION: Regulates differences in leaf patterning between juvenile and mature leaves by controlling differences in the development of primordia produced during juvenile and mature phases. Acts by activating transcription of the myb-domain protein AS1, a gene involved in leaf-axis specification. Associates with the promoter and the start of the transcribed region of AS1 and up-regulates expression of AS1 through acetylation of histones H3 and H4. {ECO:0000269|PubMed:16166385}. 43442,42393,44383,31626 Transcription factor GTE1 (Bromodomain-containing protein GTE1) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E1) (Protein IMBIBITION-INDUCIBLE 1),Transcription factor GTE6 (Bromodomain-containing protein GTE6) (Protein GENERAL TRANSCRIPTION FACTOR GROUP E6) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E6),General transcription factor group E6,Transcription factor GTE6 nucleus [GO:0005634]; positive regulation of seed germination [GO:0010030]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; chromatin remodeling [GO:0006338]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Down-regulated during germination. {ECO:0000269|PubMed:12969431}. TISSUE SPECIFICITY: Barely detectable in stems, leaves, siliques, and dry seeds, but was present at considerable levels in roots, flowers and imbibited seeds. {ECO:0000269|PubMed:12969431}.,TISSUE SPECIFICITY: Abundantly expressed in flowers. Weakly expressed in roots, leaves and siliques; and undetectable in 5-day-old seedlings. In the basal rosette leaves of 21-day-old plants, it is more abundant in leaves 6 and 7, which possess narrow elliptical laminae, than in leaves 1-4, which have round laminae, suggesting a possible correlation between its expression and the formation of elliptical leaf laminae in mature leaves. {ECO:0000269|PubMed:16166385}. locus:2044722;,locus:2100499; AT2G34900,AT3G52280 Transcription factor Os06g0138000 protein (Fragment) Q0DES3 Q0DES3_ORYSJ Os06g0138000 Os06g0138000 OSNPB_060138000 ENOG411DW5T Q8LCU7,F4J6R6 MECR_ARATH,F4J6R6_ARATH Enoyl-[acyl-carrier-protein] reductase, mitochondrial (EC 1.3.1.104) (2-enoyl thioester reductase),Polyketide synthase, enoylreductase family protein FUNCTION: Catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis (fatty acid synthesis type II). Fatty acid chain elongation in mitochondria uses acyl carrier protein (ACP) as an acyl group carrier, but the enzyme accepts both ACP and CoA thioesters as substrates in vitro. {ECO:0000250|UniProtKB:Q9BV79}. ARA:AT3G45770-MONOMER; R-ATH-77346; 1.3.1.104 40823,32316 Enoyl-[acyl-carrier-protein] reductase, mitochondrial (EC 1.3.1.104) (2-enoyl thioester reductase),Polyketide synthase, enoylreductase family protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491]; fatty acid biosynthetic process [GO:0006633],oxidoreductase activity [GO:0016491] locus:2102664; AT3G45770 trans-2-enoyl-CoA reductase Os12g0102100 protein Q0IQT2 Q0IQT2_ORYSJ Os12g0102100 Os12g0102100 OSNPB_120102100 ENOG411DW5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411DW5V RAR1,PBS2 Q9SE33,A0A1P8BDN4 RAR1_ARATH,A0A1P8BDN4_ARATH Cysteine and histidine-rich domain-containing protein RAR1 (AtRAR1) (CHORD domain-containing protein RAR1) (Protein PPHB SUSCEPTIBLE 2) (Protein REQUIRED FOR MLA12 RESISTANCE 1),Cysteine and histidine-rich domain-containing protein RAR1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. In case of infection, plants loose R gene resistance mediated by RPP4, RPP5, RPS2, RPS4, RPS5 and RPM1. {ECO:0000269|PubMed:11847308, ECO:0000269|PubMed:12034891, ECO:0000269|PubMed:12034893, ECO:0000269|PubMed:15976272}. Pst DC3000 strains grew better (infection) when inoculated on mutant rather than wildtype leaves.,Examination under UV light of leaves inoculated with Peronospora parasitica revealed occasional plant cell death-associated autofluorescence.,This mutant exhibits ~50% of the Peronospora parasitica spore levels counted on rpp5 plants. This mutant is considered susceptible to infection.,No accumulation of whole cell reactive oxygen intermediates (ROI) was observed in the majority of interacting sites.,Strong delay in hypersensitive response resulting in trailing plant cell necrosis borne out by the appearance at late time points of autofluorescing dead cells on leaves. The plants were tested with inoculations of Peronospora isolate Noco2.,This mutant exhibits low percentage of the Peronospora parasitica spore levels counted on rpp5 plants. This mutant is considered partially susceptible to infection.,The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance.,In the partially defective mutant plants an attenuated hypersensitive response was observed at most plant-pathogen interaction sites and Noco2 mycelium was seen to emerge from these areas. At later times there was less extensive pathogen growth and more extreme trailing plant cell death than was observed in the rar1-11 mutants.,Reactive oxygen intermediates (ROI) accumulation was observed at most pathogen interaction sites.,Examination under UV light of leaves inoculated with Peronospora parasitica did not reveal occasional plant cell death-associated autofluorescence. Susceptible to specific strains of Pseudomonas syringae-J. Dangl-2002 FUNCTION: Required specifically for plant innate immunity. Is essential for resistance conferred by multiple R genes recognizing different bacterial and oomycete pathogen isolates like avirulent P.syringae or H.parasitica (downy mildew). Contributes additively with SGT1B to RPP5-dependent resistance. Functions as positive regulator of RPS5 accumulation by assisting its stabilization. May function as co-chaperone of HSP90-2 to positively regulate the steady-state accumulation of RPM1 and protect it from SGT1-mediated degradation. Acts as negative regulator of pathogen-associated molecular pattern (PAMP)-triggered immunity. {ECO:0000269|PubMed:11847308, ECO:0000269|PubMed:12034891, ECO:0000269|PubMed:12034893, ECO:0000269|PubMed:14592967, ECO:0000269|PubMed:15976272, ECO:0000269|PubMed:17148606, ECO:0000269|PubMed:19304739, ECO:0000269|PubMed:19487680}. 24961,20302 Cysteine and histidine-rich domain-containing protein RAR1 (AtRAR1) (CHORD domain-containing protein RAR1) (Protein PPHB SUSCEPTIBLE 2) (Protein REQUIRED FOR MLA12 RESISTANCE 1),Cysteine and histidine-rich domain-containing protein RAR1 Hsp90 protein binding [GO:0051879]; zinc ion binding [GO:0008270]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to fungus, incompatible interaction [GO:0009817]; plant-type hypersensitive response [GO:0009626]; protein stabilization [GO:0050821]; respiratory burst involved in defense response [GO:0002679] locus:2165316; AT5G51700 cysteine and histidine-rich domain-containing protein Cysteine and histidine-rich domain-containing protein RAR1 (CHORD domain-containing protein RAR1) (OsRAR1) (Protein REQUIRED FOR MLA12 RESISTANCE 1),Os02g0535400 protein Q6EPW7,A0A0P0VJX6 RAR1_ORYSJ,A0A0P0VJX6_ORYSJ RAR1 Os02g0535400 LOC_Os02g33180 B1136H02.25 OJ1112_G07.12,Os02g0535400 OSNPB_020535400 FUNCTION: Involved in basal disease resistance to virulent strain of bacterial blight (X.oryzae) and compatible race of rice blast fungus (M.grisea). May act as positive regulator of basal defense. Associates with HSP90 and is essential for the pathogen-associated molecular pattern (PAMP)-triggered immune responses specifically enhanced by RAC1. {ECO:0000269|PubMed:18156216, ECO:0000269|PubMed:18257679}. ENOG411DW5W Q9FJU9,Q8VYE5,A0A1P8ASF8,B3H5T6,F4JMY6 E1313_ARATH,E1312_ARATH,A0A1P8ASF8_ARATH,B3H5T6_ARATH,F4JMY6_ARATH Glucan endo-1,3-beta-glucosidase 13 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 13) ((1->3)-beta-glucanase 13) (Beta-1,3-endoglucanase 13) (Beta-1,3-glucanase 13),Glucan endo-1,3-beta-glucosidase 12 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 12) ((1->3)-beta-glucanase 12) (Beta-1,3-endoglucanase 12) (Beta-1,3-glucanase 12),Carbohydrate-binding X8 domain superfamily protein,O-Glycosyl hydrolases family 17 protein ARA:AT5G56590-MONOMER;,ARA:AT4G29360-MONOMER;,ARA:GQT-561-MONOMER; 3.2.1.39 55604,57659,15053,11964,58740 Glucan endo-1,3-beta-glucosidase 13 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 13) ((1->3)-beta-glucanase 13) (Beta-1,3-endoglucanase 13) (Beta-1,3-glucanase 13),Glucan endo-1,3-beta-glucosidase 12 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 12) ((1->3)-beta-glucanase 12) (Beta-1,3-endoglucanase 12) (Beta-1,3-glucanase 12),Carbohydrate-binding X8 domain superfamily protein,O-Glycosyl hydrolases family 17 protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; defense response [GO:0006952],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; extracellular region [GO:0005576]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; defense response [GO:0006952],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2164991;,locus:2118339;,locus:4515102729; AT5G56590,AT4G29360,AT1G66852 glucan endo-1-3-beta-glucosidase Os01g0739700 protein (Putative elicitor inducible beta-1,3-glucanase NtEIG-E76) (cDNA clone:001-123-G07, full insert sequence) Q5JNL0 Q5JNL0_ORYSJ Os01g0739700 Os01g0739700 OSNPB_010739700 P0638D12.23 ENOG411DW5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411DW5Q VIP2 F4HQA1 PAF1_ARATH Protein PAF1 homolog (Protein EARLY FLOWERING 7) (Protein VERNALIZATION INDEPENDENCE 2) DISRUPTION PHENOTYPE: Early flowering, reduced plant size and defects in floral morphology in whorls 1-3, but fully fertile flowers (PubMed:12750345). Reduced seed dormancy and increased germination rate of freshly harvested seeds (PubMed:21799800). {ECO:0000269|PubMed:12750345, ECO:0000269|PubMed:21799800}. FUNCTION: Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3) (PubMed:20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressors and MAD-box genes FLC, AGL27/FLM and AGL31/MAF2. Required for histone H3 trimethylation on 'Lys-4' H3K4me3 at the FLC and AGL27/FLM loci (PubMed:15520273). Involved in the control of seed dormancy and germination (PubMed:21799800). {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:20363855, ECO:0000269|PubMed:21799800}. 67338 Protein PAF1 homolog (Protein EARLY FLOWERING 7) (Protein VERNALIZATION INDEPENDENCE 2) Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634]; flower development [GO:0009908]; histone methylation [GO:0016571]; negative regulation of flower development [GO:0009910]; regulation of transcription, DNA-templated [GO:0006355]; transcription elongation from RNA polymerase II promoter [GO:0006368] TISSUE SPECIFICITY: Expressed in roots, leaves and shoot apex. {ECO:0000269|PubMed:15520273}. locus:2017879; AT1G79730 Paf1 Os08g0157100 protein (Proline-rich protein-like) Q6ZD92 Q6ZD92_ORYSJ Os08g0157100 Os08g0157100 OSNPB_080157100 P0438H08.25 ENOG411DW5R XRN3 Q9FQ03 XRN3_ARATH 5'-3' exoribonuclease 3 (AtXRN3) (EC 3.1.13.-) (Protein EXORIBONUCLEASE 3) DISRUPTION PHENOTYPE: Embryonic lethality. {ECO:0000269|PubMed:17993620}. Null: Embryo lethal; Knockdown: Crinkled, rounded leaves; Late flowering-A. Mallory-2007 FUNCTION: Possesses 5'->3' exoribonuclease activity (PubMed:11106401). Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades miRNA-derived loops, excised during miRNA maturation in the nucleus. Required for proper development (PubMed:17993620). Involved in pre-rRNA processing. Involved with XRN2 in the 5'-end exonucleolytic processing of 5.8S and 25S rRNAs. Contributes with XRN2 to polyadenylation-dependent nuclear RNA surveillance. Involved in the degradation of aberrant polyadenylated pre-rRNA through 5'-end processing (PubMed:20338880). {ECO:0000269|PubMed:11106401, ECO:0000269|PubMed:17993620, ECO:0000269|PubMed:20338880}. R-ATH-6791226; 3.1.13.- 116826 5'-3' exoribonuclease 3 (AtXRN3) (EC 3.1.13.-) (Protein EXORIBONUCLEASE 3) nucleus [GO:0005634]; 5'-3' exoribonuclease activity [GO:0004534]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; miRNA catabolic process [GO:0010587]; mRNA processing [GO:0006397]; negative regulation of posttranscriptional gene silencing [GO:0060149]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; rRNA 5'-end processing [GO:0000967] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:11106401}. locus:2005614; AT1G75660 5-3 exoribonuclease Os07g0238700 protein (cDNA clone:J013114K24, full insert sequence) (cDNA clone:J033042P14, full insert sequence),5'-3' exoribonuclease (EC 3.1.13.-),Os01g0872700 protein (Fragment) Q0D7K3,Q5N739,A0A0P0VB49,A0A0P0VB19 Q0D7K3_ORYSJ,Q5N739_ORYSJ,A0A0P0VB49_ORYSJ,A0A0P0VB19_ORYSJ Os07g0238700 Os07g0238700 OSNPB_070238700,Os01g0872700 Os01g0872700 OSNPB_010872700 P0491F11.16,Os01g0872700 OSNPB_010872700 FUNCTION: Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. {ECO:0000256|PIRNR:PIRNR037239}. ENOG411DW5S MTERF15 Q9C6A1 MTEFE_ARATH Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) DISRUPTION PHENOTYPE: Severe growth and developmental retardation. Dwarf plants with small organs, altered organ structure and nonviable seeds. {ECO:0000269|PubMed:25402171}. FUNCTION: Transcription termination factor required for mitochondrial NAD2 intron 3 splicing and normal membrane respiratory chain Complex I activity. Essential for normal plant growth and development. Binds to RNA but not to double-stranded DNA. {ECO:0000269|PubMed:25402171}. 51031 Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; double-stranded DNA binding [GO:0003690]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing, via endonucleolytic cleavage and ligation [GO:0000394] locus:2037338; AT1G74120 mTERF Os12g0490000 protein A0A0P0YA84 A0A0P0YA84_ORYSJ Os12g0490000 OSNPB_120490000 ENOG411ED6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411ED6B AOP1 Q9ZTA3 AOP1C_ARATH Probable 2-oxoglutarate-dependent dioxygenase AOP1 (EC 1.14.11.-) FUNCTION: Probable 2-oxoglutarate-dependent dioxygenase that may be involved in glucosinolates biosynthesis. May play a role in the production of aliphatic glucosinolates (By similarity). {ECO:0000250}. ARA:AT4G03070-MONOMER; 1.14.11.- 36912 Probable 2-oxoglutarate-dependent dioxygenase AOP1 (EC 1.14.11.-) membrane [GO:0016020]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872] locus:2139389; AT4G03070 oxidoreductase acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors NA NA NA NA NA NA NA ENOG411ED6Y F9E10.31 C0Z2P1,Q9S7N6 C0Z2P1_ARATH,Q9S7N6_ARATH AT1G74840 protein (Homeodomain-like superfamily protein),F25A4.19 protein (Homeodomain-like superfamily protein) (MYB transcription factor) (Putative MYB family transcription factor; 86049-87165) (Putative myb-related transcription activator) (Putative myb-related transcription activator protein) 26587,29266 AT1G74840 protein (Homeodomain-like superfamily protein),F25A4.19 protein (Homeodomain-like superfamily protein) (MYB transcription factor) (Putative MYB family transcription factor; 86049-87165) (Putative myb-related transcription activator) (Putative myb-related transcription activator protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:2027181; AT1G74840 MYB family transcription factor NA NA NA NA NA NA NA ENOG411ED6Z UMAMIT40 Q9FL08,F4KHA8,F4KHA9 WTR42_ARATH,WTR41_ARATH,F4KHA9_ARATH WAT1-related protein At5g40240,WAT1-related protein At5g40230,WAT1-related protein 40094,39949,41780 WAT1-related protein At5g40240,WAT1-related protein At5g40230,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2173752;,locus:2173762; AT5G40240,AT5G40230 Nodulin MtN21 NA NA NA NA NA NA NA ENOG411ED6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os04g0193300 protein (Fragment),OSJNBb0026E15.3 protein (Os04g0195100 protein) (cDNA clone:002-125-B03, full insert sequence),Os11g0155225 protein,OSJNBa0059D20.17 protein (Os04g0191800 protein),Os04g0191600 protein (Fragment) Q0JEW5,Q7X8U8,Q53QH4,Q7XSK4,A0A0P0W750,A0A0P0W762,A0A0P0W7L4,A0A0P0W7J2,A0A0P0W7E1 Q0JEW5_ORYSJ,Q7X8U8_ORYSJ,Q53QH4_ORYSJ,Q7XSK4_ORYSJ,A0A0P0W750_ORYSJ,A0A0P0W762_ORYSJ,A0A0P0W7L4_ORYSJ,A0A0P0W7J2_ORYSJ,A0A0P0W7E1_ORYSJ Os04g0193300 Os04g0193300 OSNPB_040193300,Os04g0195100 Os04g0195100 OSJNBb0026E15.3 OSNPB_040195100,Os11g0155225 LOC_Os11g05680 OSNPB_110155225,Os04g0191800 Os04g0191800 OSJNBa0059D20.17 OSNPB_040191800,Os04g0191600 OSNPB_040191600,Os04g0193300 OSNPB_040193300 ENOG411ED6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411ED6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED60 T4C9.250 Q9STH0 Q9STH0_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g12410) (Uncharacterized protein T4C9.250) 18100 SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g12410) (Uncharacterized protein T4C9.250) response to auxin [GO:0009733] locus:2139124; AT4G12410 auxin-responsive NA NA NA NA NA NA NA ENOG411DY78 GSTL3,GSTL1,GSTL2 Q9LZ06,Q6NLB0,Q9M2W2 GSTL3_ARATH,GSTL1_ARATH,GSTL2_ARATH Glutathione S-transferase L3 (AtGSTL3) (EC 2.5.1.18) (GST class-lambda member 3),Glutathione S-transferase L1 (AtGSTL1) (EC 2.5.1.18) (GST class-lambda member 1),Glutathione S-transferase L2, chloroplastic (AtGSTL2) (EC 2.5.1.18) (GST class-lambda member 2) FUNCTION: Catalyzes the glutathione-dependent reduction of S-glutathionylquercetin to quercetin. {ECO:0000269|PubMed:20841361}.,FUNCTION: Catalyzes the glutathione-dependent reduction of S-glutathionylquercetin to quercetin. In vitro, possesses glutathione-dependent thiol transferase activity toward 2-hydroxyethyl disulfide (HED). {ECO:0000269|PubMed:12077129, ECO:0000269|PubMed:20841361}. Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 27090,27167,33058 Glutathione S-transferase L3 (AtGSTL3) (EC 2.5.1.18) (GST class-lambda member 3),Glutathione S-transferase L1 (AtGSTL1) (EC 2.5.1.18) (GST class-lambda member 1),Glutathione S-transferase L2, chloroplastic (AtGSTL2) (EC 2.5.1.18) (GST class-lambda member 2) cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; protein glutathionylation [GO:0010731]; response to cadmium ion [GO:0046686]; response to toxic substance [GO:0009636],cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; protein glutathionylation [GO:0010731]; response to toxic substance [GO:0009636],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; protein glutathionylation [GO:0010731]; response to toxic substance [GO:0009636] locus:2151326;,locus:2151286;,locus:2097233; AT5G02790,AT5G02780,AT3G55040 Protein IN2-1 homolog Protein IN2-1 homolog B (Glutathione S-transferase GSTZ5),IN2-1 protein, putative, expressed (Os03g0283000 protein) (Putative dehydroascorbate reductase) Q8H8U5,Q8H8U6 IN21B_ORYSJ,Q8H8U6_ORYSJ GSTZ5 Os03g0283100 LOC_Os03g17470,LOC_Os03g17460 Os03g0283000 OSNPB_030283000 ENOG411EK07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHU F4K2V4 F4K2V4_ARATH Myb/SANT-like DNA-binding domain protein 35436 Myb/SANT-like DNA-binding domain protein DNA binding [GO:0003677] locus:2181281; AT5G27260 NA NA NA NA NA NA NA NA ENOG411EJHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UPF2 regulator of nonsense transcripts homolog (yeast) NA NA NA NA NA NA NA ENOG411EJHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHQ MT2B,MT2A Q38805,P25860 MT2B_ARATH,MT2A_ARATH Metallothionein-like protein 2B (MT-2B),Metallothionein-like protein 2A (MT-2A) (MT-K) (MT-1G) FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals (Probable). Functions as metal chelator of copper (Cu) and zinc (Zn). Functions cooperatively with the phytochelatin synthase PCS1 to protect plants from Cu and cadmium toxicity (PubMed:18287486). Plays a role in Cu homeostasis, specifically in the remobilization of Cu from senescing leaves. The mobilization of Cu from internal sources is important for seed development (PubMed:24635746). {ECO:0000269|PubMed:18287486, ECO:0000269|PubMed:24635746, ECO:0000305}.,FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals (Probable). Functions as metal chelator of copper (Cu) and zinc (Zn) (PubMed:18287486). Plays a role in Cu homeostasis, specifically in the remobilization of Cu from senescing leaves. The mobilization of Cu from internal sources is important for seed development (PubMed:24635746). {ECO:0000269|PubMed:18287486, ECO:0000269|PubMed:24635746, ECO:0000305}. 7766,8163 Metallothionein-like protein 2B (MT-2B),Metallothionein-like protein 2A (MT-2A) (MT-K) (MT-1G) copper ion binding [GO:0005507],cell [GO:0005623]; copper ion binding [GO:0005507]; cellular copper ion homeostasis [GO:0006878] TISSUE SPECIFICITY: Expressed in vascular tissues of all organs. Expressed in root and leaf phloem, pollen and root hairs. {ECO:0000269|Ref.7}.,TISSUE SPECIFICITY: Abundant in leaves, inflorescences and roots of mature plants. Also detected in roots of young plants, and in siliques (PubMed:7565594). Expressed in leaf mesophyll cells, filaments, stigma and tips of elongating lateral roots (Ref.8). {ECO:0000269|PubMed:7565594, ECO:0000269|Ref.8}. locus:2180132;,locus:2083519; AT5G02380,AT3G09390 Metallothionein Metallothionein-like protein 2A (Class I metallothionein-like protein 2A) (OsMT-I-2a) (OsMT2a) (OsMT2-1) P94029 MT2A_ORYSJ MT2A MT-2 Os01g0149800 LOC_Os01g05650 OsJ_00383 P0434B04.33 FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals. {ECO:0000305}. ENOG411EJHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger Os09g0312500 protein A0A0P0XM34 A0A0P0XM34_ORYSJ Os09g0312500 OSNPB_090312500 ENOG411EJHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHX Q9SA02 FB26_ARATH F-box protein At1g31080 41428 F-box protein At1g31080 locus:2029569; AT1G31080 F-box associated domain F-box domain containing protein, expressed (Os10g0396100 protein) Q8S5N6 Q8S5N6_ORYSJ OSJNBb0058B20.30 LOC_Os10g25660 Os10g0396100 OsJ_31421 OSJNAa0011L09.11 OSNPB_100396100 ENOG411EJHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EJHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os11g0510501 protein Q2R3P2 Q2R3P2_ORYSJ Os11g0510501 LOC_Os11g31260 OsJ_34010 OSNPB_110510501 ENOG411EJHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJH5 F26G5_130 Q9LXQ3,Q9LXQ6,Q9M190,Q9LXQ4,Q9LXP5 FBL51_ARATH,FB193_ARATH,FBL49_ARATH,FBL50_ARATH,Q9LXP5_ARATH Putative F-box/LRR-repeat protein At3g44090,Putative F-box protein At3g44060,Putative F-box/LRR-repeat protein At3g42770,Putative F-box/LRR-repeat protein At3g44080,Syntaxin-related family protein (Uncharacterized protein F26G5_130) 51860,48444,60931,44850,22848 Putative F-box/LRR-repeat protein At3g44090,Putative F-box protein At3g44060,Putative F-box/LRR-repeat protein At3g42770,Putative F-box/LRR-repeat protein At3g44080,Syntaxin-related family protein (Uncharacterized protein F26G5_130) locus:2081438;,locus:2081408;,locus:2085013;,locus:2081428;,locus:2081363; AT3G44090,AT3G44060,AT3G42770,AT3G44080,AT3G44180 F-box domain Os01g0789000 protein A0A0P0V935 A0A0P0V935_ORYSJ Os01g0789000 OSNPB_010789000 ENOG411EJH4 FBX8 Q84X43 FBX8_ARATH F-box only protein 8 34529 F-box only protein 8 locus:2059909; AT2G16810 FBOX NA NA NA NA NA NA NA ENOG411EJH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: exportin NA NA NA NA NA NA NA ENOG411EJH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRSG O81047 O81047_ARATH DNA-binding protein (Putative helicase) 70851 DNA-binding protein (Putative helicase) ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386] locus:2056896; AT2G03270 DNA-binding protein DNA helicase family protein, expressed (Os03g0586900 protein) (Putative DNA helicase) (cDNA clone:J013088F16, full insert sequence) Q6F2U8 Q6F2U8_ORYSJ OSJNBa0010D22.27 LOC_Os03g38990 Os03g0586900 OsJ_11580 OSNPB_030586900 ENOG411DRSF RTL1 A0A1P8B4K5,F4JK37 A0A1P8B4K5_ARATH,F4JK37_ARATH RNAse II-like 1 32933,30101 RNAse II-like 1 ribonuclease III activity [GO:0004525]; RNA processing [GO:0006396] locus:504955425; AT4G15417 ribonuclease 3-like protein 3-like Ribonuclease 3-like protein 3 (EC 3.1.26.-) (Ribonuclease III-like protein 3) (RNase III-like protein 3) Q69KJ0 RTL3_ORYSJ Os06g0358800 LOC_Os06g25250 OsJ_21299 OSJNBb0027A16.25 FUNCTION: Cleaves double-stranded RNA (dsRNA). {ECO:0000250}. ENOG411DRSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DRSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os04g0570600 protein Q0JAX2 Q0JAX2_ORYSJ Os04g0570600 Os04g0570600 OsJ_15833 OSNPB_040570600 ENOG411DRSC F15G16.60 Q0WVG1,Q9M371,A0A1P8B1E9,A0A1I9LNZ7 Q0WVG1_ARATH,Q9M371_ARATH,A0A1P8B1E9_ARATH,A0A1I9LNZ7_ARATH Extra-large G-like protein, putative (DUF3133) (Uncharacterized protein At2g46380),Extra-large G-like protein, putative (DUF3133) (Uncharacterized protein At3g61670) (Uncharacterized protein F15G16.60),Extra-large G-like protein, putative (DUF3133) 85309,87376,74281,85363 Extra-large G-like protein, putative (DUF3133) (Uncharacterized protein At2g46380),Extra-large G-like protein, putative (DUF3133) (Uncharacterized protein At3g61670) (Uncharacterized protein F15G16.60),Extra-large G-like protein, putative (DUF3133) plasma membrane [GO:0005886] locus:2039089;,locus:2076775; AT2G46380,AT3G61670 Protein of unknown function (DUF3133) Os02g0258300 protein A0A0P0VH98 A0A0P0VH98_ORYSJ Os02g0258300 OSNPB_020258300 ENOG411DRSB RGGC Q9LVT8 RGGC_ARATH RGG repeats nuclear RNA binding protein C FUNCTION: Binds RNA. {ECO:0000250|UniProtKB:Q9SQ56}. 37999 RGG repeats nuclear RNA binding protein C nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729] locus:2171504; AT5G47210 RNA-binding protein Os05g0589600 protein (Putative nuclear RNA binding protein A) Q6L561 Q6L561_ORYSJ Os05g0589600 OJ1115_D04.10 OsJ_19739 OSJNBa0022J22.4 OSNPB_050589600 ENOG411DRSA UBP22 Q9LEW0,A0A1P8BG54 UBP22_ARATH,A0A1P8BG54_ARATH Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.4.19.12) (Deubiquitinating enzyme 22) (AtUBP22) (Ubiquitin thioesterase 22) (Ubiquitin-specific-processing protease 22),Ubiquitin-specific protease 22 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT5G10790-MONOMER; R-ATH-5689880; 3.4.19.12 63518,48674 Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.4.19.12) (Deubiquitinating enzyme 22) (AtUBP22) (Ubiquitin thioesterase 22) (Ubiquitin-specific-processing protease 22),Ubiquitin-specific protease 22 thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; zinc ion binding [GO:0008270]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2183760; AT5G10790 ubiquitin carboxyl-terminal hydrolase Os04g0647300 protein (Fragment) A0A0P0WFP5 A0A0P0WFP5_ORYSJ Os04g0647300 OSNPB_040647300 ENOG411DRSN MAP1D,MAP1C Q9FV50,F4HQQ8 MAP1D_ARATH,F4HQQ8_ARATH Methionine aminopeptidase 1D, chloroplastic/mitochondrial (MAP 1D) (MetAP 1D) (EC 3.4.11.18) (Peptidase M 1D),Methionine aminopeptidase 1B FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000255|HAMAP-Rule:MF_03174}. 3.4.11.18 38532,30973 Methionine aminopeptidase 1D, chloroplastic/mitochondrial (MAP 1D) (MetAP 1D) (EC 3.4.11.18) (Peptidase M 1D),Methionine aminopeptidase 1B chloroplast [GO:0009507]; mitochondrion [GO:0005739]; aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloexopeptidase activity [GO:0008235]; N-terminal protein amino acid modification [GO:0031365]; response to abscisic acid [GO:0009737],aminopeptidase activity [GO:0004177] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in green tissues. {ECO:0000269|PubMed:11060042}. locus:2115125; AT4G37040,AT1G13270 Removes the N-terminal methionine from nascent proteins (By similarity) Os02g0761700 protein (Putative aminopeptidase MAP1),Methionine aminopeptidase (EC 3.4.11.18),Methionine aminopeptidase-like (Os07g0434700 protein),Os07g0434700 protein (Fragment) Q6Z6H2,Q6Z4B5,Q0JA93,Q6Z3V9,A0A0N7KNC5 Q6Z6H2_ORYSJ,Q6Z4B5_ORYSJ,Q0JA93_ORYSJ,Q6Z3V9_ORYSJ,A0A0N7KNC5_ORYSJ Os02g0761700 OSNPB_020761700 P0486G03.9,Os07g0510100 OSNPB_070510100 P0409B11.17,Os04g0610500 Os04g0610500 OsJ_16114 OSNPB_040610500,P0673E01.23-1 Os07g0434700 OSNPB_070434700,Os07g0434700 OSNPB_070434700 FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. ENOG411DRSM ORP1D Q9SAF0,F4HP28 ORP1D_ARATH,F4HP28_ARATH Oxysterol-binding protein-related protein 1D (OSBP-related protein 1D),OSBP(Oxysterol binding protein)-related protein 1D FUNCTION: May be involved in the transport of sterols. {ECO:0000250}. R-ATH-192105; 92332,95028 Oxysterol-binding protein-related protein 1D (OSBP-related protein 1D),OSBP(Oxysterol binding protein)-related protein 1D lipid binding [GO:0008289]; lipid transport [GO:0006869] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16897474}. locus:2031910; AT1G13170 oxysterol-binding protein-related protein 1D-like Os12g0285600 protein (Oxysterol-binding protein, expressed) (cDNA clone:J023007B17, full insert sequence) Q2QTR4 Q2QTR4_ORYSJ Os12g0285600 LOC_Os12g18770 Os12g0285600 OsJ_35782 OSNPB_120285600 ENOG411DRSK HEMC Q43316 HEM3_ARATH Porphobilinogen deaminase, chloroplastic (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) (Protein RUGOSA1) FUNCTION: Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. {ECO:0000269|PubMed:23308205}. MISCELLANEOUS: The porphobilinogen subunits are added sequentially to the dipyrromethane cofactor that is covalently attached to the enzyme. The last step of the reaction involves the hydrolysis of the bound polypyrrole chain and the release of hydroxymethylbilane. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 2/4.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT5G08280-MONOMER;MetaCyc:AT5G08280-MONOMER; R-ATH-189451; 2.5.1.61 41043 Porphobilinogen deaminase, chloroplastic (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) (Protein RUGOSA1) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; hydroxymethylbilane synthase activity [GO:0004418]; chlorophyll biosynthetic process [GO:0015995]; defense response to bacterium [GO:0042742]; heme biosynthetic process [GO:0006783]; peptidyl-pyrromethane cofactor linkage [GO:0018160]; protoporphyrinogen IX biosynthetic process [GO:0006782] locus:2150758; AT5G08280 porphobilinogen deaminase Porphobilinogen deaminase, chloroplastic (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase),Os02g0168800 protein (Fragment) Q6H6D2,A0A0P0VFC8 HEM3_ORYSJ,A0A0P0VFC8_ORYSJ HEMC Os02g0168800 LOC_Os02g07230 OsJ_05540 P0669G09.15-1 P0669G09.15-2,Os02g0168800 OSNPB_020168800 FUNCTION: Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. MISCELLANEOUS: The porphobilinogen subunits are added to the dipyrromethane group. {ECO:0000250}. ENOG411DRSJ ROPGAP6,ROPGAP7,MXC9.11 Q9FMP8,Q8RWQ4,F4K142,B3H5D4 RGAP6_ARATH,RGAP7_ARATH,F4K142_ARATH,B3H5D4_ARATH Rho GTPase-activating protein 6 (Rho-type GTPase-activating protein 6),Rho GTPase-activating protein 7 (Rho-type GTPase-activating protein 7),Rho GTPase activation protein (RhoGAP) with PH domain-containing protein FUNCTION: Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. {ECO:0000250}. 91352,96128,90759,84941 Rho GTPase-activating protein 6 (Rho-type GTPase-activating protein 6),Rho GTPase-activating protein 7 (Rho-type GTPase-activating protein 7),Rho GTPase activation protein (RhoGAP) with PH domain-containing protein cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; regulation of GTPase activity [GO:0043087]; signal transduction [GO:0007165],chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; regulation of GTPase activity [GO:0043087]; signal transduction [GO:0007165],GTPase activator activity [GO:0005096]; signal transduction [GO:0007165] locus:2176992;,locus:2150265; AT5G12150,AT5G19390 domain-containing protein Os07g0658300 protein (cDNA clone:J033149H24, full insert sequence),Os03g0356638 protein,Os07g0658300 protein (Fragment) Q0D3Z0,A0A0P0VYD4,A0A0P0XA18,A0A0P0XAI4 Q0D3Z0_ORYSJ,A0A0P0VYD4_ORYSJ,A0A0P0XA18_ORYSJ,A0A0P0XAI4_ORYSJ Os07g0658300 Os07g0658300 OsJ_25433 OSNPB_070658300,Os03g0356638 OSNPB_030356638,Os07g0658300 OSNPB_070658300 ENOG411DRSI MYB106,MYB16 Q9LE63,Q9LXF1,A0A1P8BBQ7,A0A1P8BBP8,F4J2A8,F4K9R6 MY106_ARATH,MYB16_ARATH,A0A1P8BBQ7_ARATH,A0A1P8BBP8_ARATH,F4J2A8_ARATH,F4K9R6_ARATH Transcription factor MYB106 (Myb-related protein 106) (AtMYB106) (Transcription factor NOEK),Transcription factor MYB16 (Myb-related protein 16) (AtMYB16) (Protein MIXTA homolog) (AtMIXTA),Myb domain protein 16,Myb domain protein 106 DISRUPTION PHENOTYPE: Overbranched trichomes. {ECO:0000269|PubMed:18805951}. Increased number of trichome branches.,Increased trichome branching.,Trichomes of mutant undergo primary but not secondary branching.,Glassy trichomes with an increased number in branch points. Trichomes are normal in size but produce up to seven branch points.,Same number of branch points as in trichomes of gl-3 single mutant.,Trichomes have two branch points.,Partial suppression of the strong sti-EMU phenotype resulting in sta-like trichomes.,Slight increase in the number of trichome branch points.,Develops between two and four branch points.,Additive phenotype resulting in trichomes with up to 11 branch points. Increased trichome branching-A. Schnittger-2008 FUNCTION: Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.,FUNCTION: Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. 38575,36943,28443,27949,43558,35728 Transcription factor MYB106 (Myb-related protein 106) (AtMYB106) (Transcription factor NOEK),Transcription factor MYB16 (Myb-related protein 16) (AtMYB16) (Protein MIXTA homolog) (AtMIXTA),Myb domain protein 16,Myb domain protein 106 nucleus [GO:0005634]; DNA binding [GO:0003677]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cell morphogenesis [GO:0000902]; multicellular organism development [GO:0007275]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.,TISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}. locus:2150891;,locus:2102152; AT3G01140,AT5G15310 Transcription factor Os08g0433400 protein A0A0P0XGA4 A0A0P0XGA4_ORYSJ Os08g0433400 OSNPB_080433400 ENOG411DRSH Q9LVF7,A0A1P8B7J4,A0A1P8B7K8,A0A1P8B7J1,F4JI52 Q9LVF7_ARATH,A0A1P8B7J4_ARATH,A0A1P8B7K8_ARATH,A0A1P8B7J1_ARATH,F4JI52_ARATH At3g21480 protein (BRCT domain-containing DNA repair protein),BRCT domain-containing DNA repair protein R-ATH-5693565; 115950,78211,85502,75152,85045 At3g21480 protein (BRCT domain-containing DNA repair protein),BRCT domain-containing DNA repair protein locus:2089960;,locus:2125442; AT3G21480,AT4G03130 BRCT Os05g0147133 protein A0A0P0WHV3 A0A0P0WHV3_ORYSJ Os05g0147133 OSNPB_050147133 ENOG411DRSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Expressed protein (Os03g0310600 protein) (cDNA clone:002-146-C01, full insert sequence) Q10MF5 Q10MF5_ORYSJ Os03g0310600 LOC_Os03g19700 Os03g0310600 OSNPB_030310600 ENOG411DRSV PAD1,PAD2 P30186,O24616,Q2V3Q0 PSA7A_ARATH,PSA7B_ARATH,Q2V3Q0_ARATH Proteasome subunit alpha type-7-A (EC 3.4.25.1) (20S proteasome alpha subunit D-1) (Proteasome component 6A) (Proteasome subunit alpha type-4) (TAS-G64),Proteasome subunit alpha type-7-B (EC 3.4.25.1) (20S proteasome alpha subunit D-2) (Proteasome component 6B) (Proteasome component 6C) (Proteasome subunit alpha type-4),Proteasome subunit alpha type (EC 3.4.25.1) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the association of the SCF(TIR1) E3 ubiquitin ligase complex with the proteasome. {ECO:0000269|PubMed:11387208}.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU000551}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 27337,27324,26569 Proteasome subunit alpha type-7-A (EC 3.4.25.1) (20S proteasome alpha subunit D-1) (Proteasome component 6A) (Proteasome subunit alpha type-4) (TAS-G64),Proteasome subunit alpha type-7-B (EC 3.4.25.1) (20S proteasome alpha subunit D-2) (Proteasome component 6B) (Proteasome component 6C) (Proteasome subunit alpha type-4),Proteasome subunit alpha type (EC 3.4.25.1) chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; spindle [GO:0005819]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; threonine-type endopeptidase activity [GO:0004298]; ubiquitin-dependent protein catabolic process [GO:0006511],chloroplast [GO:0009507]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; vacuole [GO:0005773]; threonine-type endopeptidase activity [GO:0004298]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:1516703}. locus:2080833;,locus:2156962; AT3G51260,AT5G66140 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity Proteasome subunit alpha type-7-A (EC 3.4.25.1) (20S proteasome alpha subunit D-1) (20S proteasome subunit alpha-4-A),Proteasome subunit alpha type-7-B (EC 3.4.25.1) (20S proteasome alpha subunit D-2) (20S proteasome subunit alpha-4-B) Q6YT00,Q0J006 PSA7A_ORYSJ,PSA7B_ORYSJ Os08g0548900 LOC_Os08g43540 OJ1112_E06.28 OJ1479_B11.3 OsJ_000765 OsJ_00782,PAD1 Os09g0538200 LOC_Os09g36710 OsJ_028982 P0229B10.22 P0569E11.44 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. ENOG411DRSU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-Box protein F-box protein-like (Os02g0675800 protein) (cDNA clone:J023117D20, full insert sequence),Os04g0571300 protein (cDNA clone:002-113-B11, full insert sequence),Os04g0571300 protein Q6EP91,Q0JAW8,A0A0P0WDP7 Q6EP91_ORYSJ,Q0JAW8_ORYSJ,A0A0P0WDP7_ORYSJ Os02g0675800 Os02g0675800 OsJ_07910 OSNPB_020675800 P0135D07.16,Os04g0571300 Os04g0571300 OsJ_15837 OSNPB_040571300,Os04g0571300 OSNPB_040571300 ENOG411DRST ACX3,ACX3.2 P0CZ23,Q9LMI7,P0CZ24 ACOX3_ARATH,ACO32_ARATH,Y3669_ARATH Acyl-coenzyme A oxidase 3, peroxisomal (AOX 3) (Acyl-CoA oxidase 3) (EC 1.3.3.6) (Medium-chain acyl-CoA oxidase) (AtCX3),Putative acyl-coenzyme A oxidase 3.2, peroxisomal (EC 1.3.3.6),Putative acyl-coenzyme A oxidase At3g06690 (Acyl-CoA oxidase) (EC 1.3.3.6) Plants display decreased sensitivity to the inhibitory effect of indole-3-butyric acid (IBA) on root elongation while remaining sensitive to inhibitory concentrations of indole-3-acetic acid. They maintain their ability to initiate lateral roots in response to IBA. Insensitive to IBA-B. Bartel-2005 FUNCTION: Catalyzes the desaturation of medium-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on C8:0- to C14:0-CoA with a maximal activity on C12:0-CoA.,FUNCTION: Catalyzes the desaturation of acyl-CoAs to 2-trans-enoyl-CoAs. {ECO:0000250}. PATHWAY: Lipid metabolism; peroxisomal fatty acid beta-oxidation. MetaCyc:AT1G06290-MONOMER;,ARA:AT1G06310-MONOMER; R-ATH-389887; 1.3.3.6; 1.3.3.6 75676,75900,21037 Acyl-coenzyme A oxidase 3, peroxisomal (AOX 3) (Acyl-CoA oxidase 3) (EC 1.3.3.6) (Medium-chain acyl-CoA oxidase) (AtCX3),Putative acyl-coenzyme A oxidase 3.2, peroxisomal (EC 1.3.3.6),Putative acyl-coenzyme A oxidase At3g06690 (Acyl-CoA oxidase) (EC 1.3.3.6) peroxisome [GO:0005777]; acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; flavin adenine dinucleotide binding [GO:0050660]; fatty acid beta-oxidation [GO:0006635]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539]; fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; medium-chain fatty acid metabolic process [GO:0051791],peroxisome [GO:0005777]; acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; flavin adenine dinucleotide binding [GO:0050660]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539],peroxisome [GO:0005777]; acyl-CoA oxidase activity [GO:0003997]; fatty acid beta-oxidation [GO:0006635] DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak at day 2 and then declines steadily until day 7. Not detected in developing seeds. Constitutive expression in root axis. {ECO:0000269|PubMed:10859203}. TISSUE SPECIFICITY: Most abundant in flowers and senescing rosette leaves. Lower expression in hypocotyls, stems, young rosette leaves, cotyledons, cauline leaves and root tip of young seedlings. {ECO:0000269|PubMed:10859203, ECO:0000269|PubMed:10918060}. locus:2038540;,locus:2202275;,locus:2083343; AT1G06290,AT1G06310,AT3G06690 acyl-coenzyme A oxidase Acyl-coenzyme A oxidase Q69XR7 Q69XR7_ORYSJ Os06g0354500 OSNPB_060354500 P0526E12.23 ENOG411DRSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum Os06g0167500 protein (Receptor-like protein kinase-like) (cDNA clone:J023022E12, full insert sequence),Os06g0167500 protein (Fragment) Q5VRG4,A0A0P0WTC1 Q5VRG4_ORYSJ,A0A0P0WTC1_ORYSJ P0680A03.27-1 Os06g0167500 OSJNBa0033B09.6-1 OSNPB_060167500,Os06g0167500 OSNPB_060167500 ENOG411DRSR Q39230 SYSC_ARATH Serine--tRNA ligase, cytoplasmic (EC 6.1.1.11) (Seryl-tRNA synthetase) (SerRS) (Seryl-tRNA(Ser/Sec) synthetase) FUNCTION: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec). {ECO:0000250|UniProtKB:P0A8L1}. PATHWAY: Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1. ARA:AT5G27470-MONOMER; 6.1.1.11 51629 Serine--tRNA ligase, cytoplasmic (EC 6.1.1.11) (Seryl-tRNA synthetase) (SerRS) (Seryl-tRNA(Ser/Sec) synthetase) cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; serine-tRNA ligase activity [GO:0004828]; response to cadmium ion [GO:0046686]; selenocysteinyl-tRNA(Sec) biosynthetic process [GO:0097056]; seryl-tRNA aminoacylation [GO:0006434] locus:2146400; AT5G27470 seryl-trna synthetase Os01g0559100 protein (Putative seryl-tRNA synthetase) (cDNA clone:J023026G18, full insert sequence),Os01g0559100 protein (Putative seryl-tRNA synthetase),Os03g0198400 protein (Seryl-tRNA synthetase, putative, expressed) (cDNA clone:001-029-C08, full insert sequence) (cDNA clone:J033118N18, full insert sequence) Q5JKQ2,Q5JKQ3,Q10QF5 Q5JKQ2_ORYSJ,Q5JKQ3_ORYSJ,Q10QF5_ORYSJ B1064G04.18-2 B1144D11.40-2 Os01g0559100 OSNPB_010559100,B1064G04.18-1 B1144D11.40-1 Os01g0559100 OSNPB_010559100,LOC_Os03g10190 Os03g0198400 OsJ_09790 OSNPB_030198400 ENOG411DRSQ MUP24.14 F4K0G5 F4K0G5_ARATH Uncharacterized protein 77815 Uncharacterized protein chloroplast [GO:0009507] locus:2175806; AT5G60720 Protein of unknown function DUF547 Os03g0859900 protein (Fragment) Q0DLK3 Q0DLK3_ORYSJ Os03g0859900 OSNPB_030859900 ENOG411DRSP ZIP6 O64738 ZIP6_ARATH Zinc transporter 6, chloroplastic (ZRT/IRT-like protein 6) FUNCTION: May play a role in the transport of zinc in the plastids. {ECO:0000250}. 36021 Zinc transporter 6, chloroplastic (ZRT/IRT-like protein 6) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385]; response to nematode [GO:0009624]; zinc II ion transmembrane transport [GO:0071577] locus:2045634; AT2G30080 zinc transporter Zinc transporter 6 (ZRT/IRT-like protein 6) (OsZIP6),Os02g0702700 protein (Fragment) Q6L8F9,C7IZ14 ZIP6_ORYSJ,C7IZ14_ORYSJ ZIP6 Os05g0164800 LOC_Os05g07210 OSJNBa0027N19.9,Os02g0702700 Os02g0702700 OSNPB_020702700 FUNCTION: Zinc transporter that may be involved in zinc uptake from the rhizosphere. {ECO:0000250}. ENOG411DRSZ ABCG31 Q7PC88 AB31G_ARATH ABC transporter G family member 31 (ABC transporter ABCG.31) (AtABCG31) (Pleiotropic drug resistance protein 3) FUNCTION: May be a general defense protein. {ECO:0000250}. 159872 ABC transporter G family member 31 (ABC transporter ABCG.31) (AtABCG31) (Pleiotropic drug resistance protein 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; drug transmembrane transport [GO:0006855] TISSUE SPECIFICITY: Expressed in leaves and inflorescence. {ECO:0000269|PubMed:12430018}. locus:2045683; AT2G29940 Pleiotropic drug resistance protein ABC transporter G family member 52 (OsABCG52) (Pleiotropic drug resistance protein 18) (OsPDR18),ABC transporter G family member 40 (OsABCG40) (Pleiotropic drug resistance protein 4) (OsPDR4),ABC transporter G family member 46 (OsABCG46) (Pleiotropic drug resistance protein 21) (OsPDR21),ABC transporter G family member 47 (OsABCG47) (Pleiotropic drug resistance protein 19) (OsPDR19),ABC transporter G family member 48 (OsABCG48) (Pleiotropic drug resistance protein 3) (OsPDR3),ABC transporter G family member 51 (OsABCG51) (Pleiotropic drug resistance protein 13) (OsPDR13),Os09g0332700 protein,Os09g0332700 protein (Fragment),Os09g0392400 protein (Fragment),Os09g0333000 protein (Fragment),Os10g0205500 protein (Fragment),Os09g0332300 protein,Os09g0333600 protein,Os09g0333500 protein (Fragment),Os02g0318450 protein B9G300,Q8GU85,C7J6G6,Q6EQ60,Q8GU84,Q8S628,A0A0P0XK88,A0A0P0XLJ2,A0A0P0XL74,A0A0P0XK90,A0A0P0XSH1,A0A0P0XLR2,A0A0P0XKF3,A0A0P0XLU6,A0A0N7KF66 AB52G_ORYSJ,AB40G_ORYSJ,AB46G_ORYSJ,AB47G_ORYSJ,AB48G_ORYSJ,AB51G_ORYSJ,A0A0P0XK88_ORYSJ,A0A0P0XLJ2_ORYSJ,A0A0P0XL74_ORYSJ,A0A0P0XK90_ORYSJ,A0A0P0XSH1_ORYSJ,A0A0P0XLR2_ORYSJ,A0A0P0XKF3_ORYSJ,A0A0P0XLU6_ORYSJ,A0A0N7KF66_ORYSJ ABCG52 PDR18 Os09g0333600/Os09g0333500 LOC_Os09g16458/LOC_Os09g16449 OsJ_28934 P0466E03.13,ABCG40 PDR4 Os02g0318450/Os02g0318500 LOC_Os02g21340 OJ1134_B09.15 OSJNBa0086N11.3,ABCG46 PDR21 Os09g0332360 LOC_Os09g16290 OsJ_28924,ABCG47 PDR19 Os09g0333000 LOC_Os09g16380 OSJNBa0017I18.31,ABCG48 PDR3 Os11g0587600 LOC_Os11g37700 P0704G09,ABCG51 PDR13 Os10g0205500 LOC_Os10g13830 OSJNBb0048O22.8,Os09g0332700 OSNPB_090332700,Os09g0392400 OSNPB_090392400,Os09g0333000 OSNPB_090333000,Os10g0205500 OSNPB_100205500,Os09g0332300 OSNPB_090332300,Os09g0333600 OSNPB_090333600,Os09g0333500 OSNPB_090333500,Os02g0318450 OSNPB_020318450 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411DRSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:YDG_SRA Os08g0565700 protein (Putative SET1) Q84Z97 Q84Z97_ORYSJ P0705A05.133 Os08g0565700 OsJ_28318 OSJNBa0044E16.17 OSNPB_080565700 ENOG411DRSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0550500 protein (Stripe rust resistance protein Yr10, putative, expressed),Os11g0550100 protein (Fragment) Q2R2R4,A0A0P0Y378 Q2R2R4_ORYSJ,A0A0P0Y378_ORYSJ Os11g0550500 LOC_Os11g34920 Os11g0550500 OsJ_34229 OSNPB_110550500,Os11g0550100 OSNPB_110550100 ENOG411DRS7 VPS45 O49048 VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog (AtVPS45) Null: Complete male gametophyte defective; Female gametophyte defective; Knockdown: Severe dwarf-D. Bassham-2009 FUNCTION: Involved in the protein transport to the vacuole, probably at the level of vesicle fusion at the trans-Golgi network (TGN) and not in transport from the TGN to the prevacuolar compartment. Binds syntaxins. R-ATH-6811438; 64942 Vacuolar protein sorting-associated protein 45 homolog (AtVPS45) plant-type vacuole membrane [GO:0009705]; trans-Golgi network [GO:0005802]; intracellular protein transport [GO:0006886]; vesicle docking involved in exocytosis [GO:0006904] TISSUE SPECIFICITY: Highly expressed in roots, lower expression in leaves, stems and flowers. locus:2196025; AT1G77140 vacuolar protein sorting-associated protein 45 Os02g0437800 protein (Putative vacuolar protein sorting homolog),Os02g0437800 protein (Putative vacuolar protein sorting homolog) (cDNA clone:002-105-H02, full insert sequence),Os02g0437800 protein (Fragment) Q6ZGF2,Q6ZGF1,A0A0P0VII7 Q6ZGF2_ORYSJ,Q6ZGF1_ORYSJ,A0A0P0VII7_ORYSJ OJ1287_H05.17-1 Os02g0437800 OsJ_06545 OSNPB_020437800,OJ1287_H05.17-2 Os02g0437800 OSNPB_020437800,Os02g0437800 OSNPB_020437800 ENOG411DRS6 B'ALPHA,B'ETA,B'THETA,B'KAPPA,B'ZETA,B'GAMMA,B'BETA,ATB' GAMMA O04375,Q9LU89,Q8LF36,Q93YV6,Q9LVE2,Q8RW96,O04376,F4JBC5,A0A1P8B4K9,F4JBC4 2A5A_ARATH,2A5N_ARATH,2A5T_ARATH,2A5K_ARATH,2A5Z_ARATH,2A5G_ARATH,2A5B_ARATH,F4JBC5_ARATH,A0A1P8B4K9_ARATH,F4JBC4_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform (AtB' alpha) (PP2A, B' subunit, alpha isoform),Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform (AtB' eta) (PP2A, B' subunit, eta isoform),Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform (AtB' theta) (PP2A, B' subunit, theta isoform),Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform (AtB' kappa) (PP2A, B' subunit, kappa isoform),Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform (AtB' zeta) (PP2A, B' subunit, zeta isoform),Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform (AtB' gamma) (PP2A, B' subunit, gamma isoform),Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform (AtB' beta) (PP2A, B' subunit, beta isoform),Protein phosphatase 2A regulatory B subunit family protein DISRUPTION PHENOTYPE: Delayed flowering. {ECO:0000269|PubMed:19672620}.,DISRUPTION PHENOTYPE: Reduced plant size and fresh weight. {ECO:0000269|PubMed:19672620}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19672620}.,DISRUPTION PHENOTYPE: Wrinkled leaves, stunted growth, delayed flowering and formation of age-dependent yellowing lesions (PubMed:21571669, PubMed:22041935, PubMed:23976921). Conditional phenotype with premature yellowing and constitutive reactive oxygen species (ROS) production in distinct peripheral areas of mature leaves when grown under moderate light intensity and low humidity. May partially evade the accumulation of H(2)O(2) via alternative oxidases (AOX) activity. Increased levels of AOX1A and AOX1D in leaf mitochondria. Increased level of ACO3 phosphorylation. {ECO:0000269|PubMed:21571669, ECO:0000269|PubMed:22041935, ECO:0000269|PubMed:23976921, ECO:0000269|PubMed:25307043}. FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity). Required for the formation of the PP2A holoenzyme that positively regulates brassinosteroid signaling by dephosphorylating and activating BZR1 (PubMed:21258370). {ECO:0000250|UniProtKB:Q13362, ECO:0000269|PubMed:21258370}.,FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity). The holoenzyme composed of PP2AA1, PP2A4 and B'ETA acts as negative regulator of plant innate immunity by controlling BAK1 phosphorylation state and activation in surface-localized immune receptor complexes (PubMed:25085430). Required for the formation of the PP2A holoenzyme that negatively regulates brassinosteroid signaling by dephosphorylating and inactivating BRI1 in the cytoplasm (PubMed:26517938). {ECO:0000250|UniProtKB:Q13362, ECO:0000269|PubMed:25085430, ECO:0000269|PubMed:26517938}.,FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity). Associates with the serine/threonine-protein phosphatase PP2A catalytic subunit C and regulatory subunit A to positively regulates beta-oxidation of fatty acids and protoauxins in peroxisomes by dephosphorylating peroxisomal beta-oxidation-related proteins (PubMed:25489022). Required for the formation of the PP2A holoenzyme that negatively regulates brassinosteroid signaling by dephosphorylating and inactivating BRI1 in the cytoplasm (PubMed:26517938). {ECO:0000250|UniProtKB:Q13362, ECO:0000269|PubMed:25489022, ECO:0000269|PubMed:26517938}.,FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000250|UniProtKB:Q13362}.,FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity). The holoenzyme composed of PP2AA1, PP2A4 and B'ZETA acts as negative regulator of plant innate immunity by controlling BAK1 phosphorylation state and activation in surface-localized immune receptor complexes (PubMed:25085430). Required for the formation of the PP2A holoenzyme that negatively regulates brassinosteroid signaling by dephosphorylating and inactivating BRI1 in the cytoplasm (PubMed:26517938). Involved in growth regulation and stress signaling. Involved in the regulation of reactive oxygen species (ROS) signaling (PubMed:26012558). {ECO:0000250|UniProtKB:Q13362, ECO:0000269|PubMed:25085430, ECO:0000269|PubMed:26012558, ECO:0000269|PubMed:26517938}.,FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity). Required for the formation of the PP2A holoenzyme that negatively regulates brassinosteroid signaling by dephosphorylating and inactivating BRI1 in the cytoplasm (PubMed:26517938). Seems to be functionally connected with CPR5 and may mediate the negative regulation of defense reactions and senescence under low irradiances. May contribute to the epigenetic regulation of defense gene expression (PubMed:21571669). Involved in the control of methoxylation of indole glucosinolates and formation of 4-methoxy- indol-3-yl-methyl glucosinolate in leaves, through direct interaction with indole glucosinolate methyltransferases (PubMed:27598402). Involved in growth regulation and stress signaling (PubMed:26012558). Involved in the regulation of reactive oxygen species (ROS) signaling and maintenance of cellular ROS homeostasis (PubMed:26012558, PubMed:25307043). Required to control the level of ACO3 phosphorylation in the cytoplasm. Regulates hydrogen peroxide metabolism by controlling the abundance of AOX1A and AXO3/AOX1D in leaf mitochondria (PubMed:25307043). May mediate dephosphorylation of CRT1 and promote the degradation of unfolded proteins in endoplasmic reticulum (ER) (PubMed:22041935). Involved in the regulation of flowering time by repressing FLC, the main flowering repressor gene (PubMed:23976921). {ECO:0000250|UniProtKB:Q13362, ECO:0000269|PubMed:21571669, ECO:0000269|PubMed:22041935, ECO:0000269|PubMed:23976921, ECO:0000269|PubMed:25307043, ECO:0000269|PubMed:26012558, ECO:0000269|PubMed:26517938, ECO:0000269|PubMed:27598402}.,FUNCTION: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000256|PIRNR:PIRNR028043}. R-ATH-198753;R-ATH-202670;R-ATH-5673000;R-ATH-5675221; 57536,58758,56510,56422,61731,59157,57472,58752,49420,60779 Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform (AtB' alpha) (PP2A, B' subunit, alpha isoform),Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform (AtB' eta) (PP2A, B' subunit, eta isoform),Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform (AtB' theta) (PP2A, B' subunit, theta isoform),Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform (AtB' kappa) (PP2A, B' subunit, kappa isoform),Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform (AtB' zeta) (PP2A, B' subunit, zeta isoform),Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform (AtB' gamma) (PP2A, B' subunit, gamma isoform),Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform (AtB' beta) (PP2A, B' subunit, beta isoform),Protein phosphatase 2A regulatory B subunit family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; brassinosteroid mediated signaling pathway [GO:0009742]; regulation of phosphorylation [GO:0042325],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; brassinosteroid mediated signaling pathway [GO:0009742]; defense response [GO:0006952],cytosol [GO:0005829]; peroxisome [GO:0005777]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; brassinosteroid mediated signaling pathway [GO:0009742]; negative regulation of brassinosteroid mediated signaling pathway [GO:1900458]; positive regulation of fatty acid beta-oxidation [GO:0032000],cytoplasm [GO:0005737]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; signal transduction [GO:0007165],cytosol [GO:0005829]; mitochondrion [GO:0005739]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; brassinosteroid mediated signaling pathway [GO:0009742]; defense response [GO:0006952]; negative regulation of brassinosteroid mediated signaling pathway [GO:1900458]; negative regulation of innate immune response [GO:0045824]; response to photooxidative stress [GO:0080183],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein phosphatase type 2A complex [GO:0000159]; poly(U) RNA binding [GO:0008266]; protein phosphatase regulator activity [GO:0019888]; brassinosteroid mediated signaling pathway [GO:0009742]; defense response [GO:0006952]; flower development [GO:0009908]; indole glucosinolate biosynthetic process [GO:0009759]; methionine metabolic process [GO:0006555]; negative regulation of defense response [GO:0031348]; regulation of cell aging [GO:0090342]; regulation of reactive oxygen species metabolic process [GO:2000377]; S-adenosylmethionine cycle [GO:0033353]; trichome morphogenesis [GO:0010090],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; brassinosteroid mediated signaling pathway [GO:0009742],protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; signal transduction [GO:0007165],cytosol [GO:0005829]; nucleus [GO:0005634]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed ubiquitously, higher levels in leaves. {ECO:0000269|PubMed:9128737}.,TISSUE SPECIFICITY: Highly expressed in dry seeds. Expressed in roots, cotyledons, rosette leaves and flowers. {ECO:0000269|PubMed:25489022}.,TISSUE SPECIFICITY: Expressed in roots, emerging lateral roots, cotyledons, leaves, floral stalks and flowers. {ECO:0000269|PubMed:26012558}.,TISSUE SPECIFICITY: Expressed ubiquitously at low levels (PubMed:9128737). Expressed in roots, emerging lateral roots, cotyledons, leaves, floral stalks and flowers (PubMed:26012558). {ECO:0000269|PubMed:26012558, ECO:0000269|PubMed:9128737}.,TISSUE SPECIFICITY: Expressed ubiquitously, higher levels in cotyledons and flowers. {ECO:0000269|PubMed:9128737}. locus:2142619;,locus:2009912;,locus:2179499;,locus:2089905;,locus:505006470;,locus:2085099;,locus:2092175; AT5G03470,AT3G26020,AT1G13460,AT5G25510,AT3G21650,AT4G15415,AT3G09880 Serine threonine protein phosphatase 2A Serine/threonine protein phosphatase 2A regulatory subunit,Os05g0555100 protein (Fragment) Q7FAG9,Q6YX33,Q0DG37,Q7Y011,Q75LC7 Q7FAG9_ORYSJ,Q6YX33_ORYSJ,Q0DG37_ORYSJ,Q7Y011_ORYSJ,Q75LC7_ORYSJ Os04g0485100 Os04g0485100 OJ000223_09.6 OsJ_15242 OSJNBa0081L15.16 OSNPB_040485100,OSJNBa0091F23.19 Os08g0122000 B1203H11.34 OsJ_25866 OSJNBa0073J19.11 OSNPB_080122000,Os05g0555100 Os05g0555100 OSNPB_050555100,OSJNBb0070O09.3 Os03g0681800 LOC_Os03g47790 OSNPB_030681800,OSJNBa0032G11.16 LOC_Os03g62730 Os03g0844500 OsJ_13339 OSNPB_030844500 FUNCTION: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000256|PIRNR:PIRNR028043}. ENOG411DRS5 PMI1 Q9C8E6 PMI1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1 DISRUPTION PHENOTYPE: Severely attenuated chloroplast movements under low- and high-light fluence, leading to evenly distributed chloroplasts in leaf mesophyll in pmi1-1 (PubMed:16113226, PubMed:25154696). Severe defects in both chloroplast and nuclear photorelocation movements resulting from the impaired regulation of chloroplast-actin filaments in pmi1-5 (PubMed:26324877). Reduced response to water-deficit and abscisic acid (ABA) treatments. The mutants pmi1-3 and pmi1-4 are hypersensitive to ABA during seed germination, but not pmi1-1, which is hyposensitive. Chloroplasts of pmi1-3 have altered chloroplast movements in low light (PubMed:25154696). {ECO:0000269|PubMed:16113226, ECO:0000269|PubMed:25154696, ECO:0000269|PubMed:26324877}. mutant plants exhibit severely attenuated chloroplast movements under all tested fluence rates of light. Leaf cross sections revealed that regardless of the light condition chloroplasts are more evenly distributed in leaf mesophyll cells in mutants than in the wild type.,severely attenuated chloroplast movement similar phenotype to pmi1-2. Abnormal chloroplast movement under a variety of light fluence rates-R. Hangarter-2005 FUNCTION: Necessary for chloroplast and nuclear photorelocation movements via the regulation of chloroplast-actin (cp-actin) filaments in mesophyll cells, and together with PMIR1, in pavement cells (PubMed:26324877). Required component for both the low- and high-light-dependent chloroplast movement responses via an abscisic acid (ABA) pathway (PubMed:16113226, PubMed:25154696). Involved in the ABA response pathway during seed germination. Modulates ABA accumulation during periods of water deficit at the seedling stage (PubMed:25154696). {ECO:0000269|PubMed:16113226, ECO:0000269|PubMed:25154696, ECO:0000269|PubMed:26324877}. 93875 Protein PLASTID MOVEMENT IMPAIRED 1 cytosol [GO:0005829]; plasma membrane [GO:0005886]; abscisic acid homeostasis [GO:1902265]; abscisic acid-activated signaling pathway [GO:0009738]; actin filament-based movement [GO:0030048]; chloroplast avoidance movement [GO:0009903]; chloroplast relocation [GO:0009902]; nuclear migration along microfilament [GO:0031022]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of seed germination [GO:0010029]; response to blue light [GO:0009637]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Expressed in leaves, stems, cauline leaves, and flowers but not in roots (PubMed:16113226). Present in leaves in both mesophyll and pavement cells (PubMed:26324877). {ECO:0000269|PubMed:16113226, ECO:0000269|PubMed:26324877}. locus:2036645; AT1G42550 NA Expressed protein (Os10g0539700 protein) (cDNA clone:J013153C17, full insert sequence),Os09g0553900 protein (cDNA clone:J013042N12, full insert sequence) Q7XCN0,Q0IZR7 Q7XCN0_ORYSJ,Q0IZR7_ORYSJ OSJNBb0064P21.6 LOC_Os10g39430 Os10g0539700 OSNPB_100539700,Os09g0553900 Os09g0553900 OSNPB_090553900 ENOG411DRS4 MAPKKK5 Q9C5H5,A0A1P8BB20 M3K5G_ARATH,A0A1P8BB20_ARATH Mitogen-activated protein kinase kinase kinase 5 (EC 2.7.11.25) (MAP3K gamma protein kinase) (AtMAP3Kgamma),Mitogen-activated protein kinase kinase kinase 5 DISRUPTION PHENOTYPE: Normal morphology in standard conditions. Impaired chitin-induced MAPK activation (e.g. MPK3, MPK4, and MPK6) and altered subsequent disease resistance to A.brassicicola associated with reduced levels of chitin-induced callose deposition. {ECO:0000269|PubMed:27679653}. FUNCTION: Mitogen-activated protein kinase (MAPK) involved in the transduction of signal between the host cell surface chitin receptor complex CERK1-LYK5 and the intracellular MAPK cascade that leads to chitin-induced immunity. Phosphorylates and activates MAPK targets (e.g. MKK4, MKK5, and possibly MKK2) when phosphorylated by PBL27 after elicitation by chitin. Required for resistance to the fungus A.brassicicola. {ECO:0000269|PubMed:27679653}. 2.7.11.25 79319,75516 Mitogen-activated protein kinase kinase kinase 5 (EC 2.7.11.25) (MAP3K gamma protein kinase) (AtMAP3Kgamma),Mitogen-activated protein kinase kinase kinase 5 cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; cellular response to chitin [GO:0071323]; MAPK cascade involved in innate immune response [GO:0035420]; protein autophosphorylation [GO:0046777]; regulation of defense response by callose deposition [GO:2000071]; regulation of defense response to fungus [GO:1900150]; regulation of mitotic cell cycle [GO:0007346]; response to chitin [GO:0010200]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Mostly expressed in flower buds. Also present in pollen, roots, leaves and seedlings, and, at low levels, in stems and immature siliques. {ECO:0000269|PubMed:10095117}. locus:2174969; AT5G66850 - STE kinases include homologs to sterile 7 sterile 11 and sterile 20 from yeast expressed Os07g0119000 protein (cDNA clone:J023040N08, full insert sequence),Os03g0764300 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J013155F15, full insert sequence),Os03g0764300 protein Q0D8Z1,Q10EQ9,A0A0P0W3N4 Q0D8Z1_ORYSJ,Q10EQ9_ORYSJ,A0A0P0W3N4_ORYSJ Os07g0119000 Os07g0119000 OSNPB_070119000,Os03g0764300 LOC_Os03g55560 Os03g0764300 OSNPB_030764300,Os03g0764300 OSNPB_030764300 ENOG411DRS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DRS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NHL repeat NHL repeat-containing protein-like (Os06g0269300 protein) (cDNA clone:J033117I22, full insert sequence),Os02g0730400 protein (Putative NHL repeat-containing protein) (cDNA clone:J033032F08, full insert sequence),Os02g0730400 protein Q5Z6M0,Q6YWQ3,A0A0P0VPC5 Q5Z6M0_ORYSJ,Q6YWQ3_ORYSJ,A0A0P0VPC5_ORYSJ Os06g0269300 OsJ_20925 OSJNBa0084K06.11 OSNPB_060269300,Os02g0730400 Os02g0730400 OsJ_08258 OSJNBa0072H09.38 OSNPB_020730400 P0617A09.17,Os02g0730400 OSNPB_020730400 ENOG411DRS1 NRPC1 F4JXF9,F4JXF8 NRPC1_ARATH,F4JXF8_ARATH DNA-directed RNA polymerase III subunit 1 (DNA-directed RNA polymerase III subunit RPC1) (DNA polymerase I subunit C1) (EC 2.7.7.6) (Nuclear RNA polymerase C1),DNA-directed RNA polymerase subunit (EC 2.7.7.6) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Forms the polymerase active center together with the second largest subunit. A single-stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol III. A bridging helix emanates from NRPC1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol III by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. {ECO:0000250|UniProtKB:P04051}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU004279}. R-ATH-1834949; 2.7.7.6 153006,154618 DNA-directed RNA polymerase III subunit 1 (DNA-directed RNA polymerase III subunit RPC1) (DNA polymerase I subunit C1) (EC 2.7.7.6) (Nuclear RNA polymerase C1),DNA-directed RNA polymerase subunit (EC 2.7.7.6) nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; transcription, DNA-templated [GO:0006351],DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase III promoter [GO:0006383] locus:2164175; AT5G60040 DNA-directed RNA polymerase DNA-directed RNA polymerase subunit (EC 2.7.7.6) Q7X881 Q7X881_ORYSJ Os04g0492300 OJ990528_30.3 OSJNBa0076N16.24 OSNPB_040492300 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU004279}. ENOG411DRS0 ATP6-1; ,ATP6-2 P93298,P92547 ATP61_ARATH,ATP62_ARATH ATP synthase subunit a-1 (F-ATPase protein 6) (P6-1),ATP synthase subunit a-2 (F-ATPase protein 6) (P6-2) FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane (By similarity). {ECO:0000250}. MISCELLANEOUS: The atp6 gene is located on the border of one of the mitochondrial DNA repeats resulting in two identical copies of the mature protein with different propeptide extensions.; MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07741) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited.,MISCELLANEOUS: The atp6 gene is located on the border of one of the mitochondrial DNA repeats resulting in two identical copies of the mature protein with different propeptide extensions. 42342,39729 ATP synthase subunit a-1 (F-ATPase protein 6) (P6-1),ATP synthase subunit a-2 (F-ATPase protein 6) (P6-2) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; proton-transporting ATP synthase complex, coupling factor F(o) [GO:0045263]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP synthesis coupled proton transport [GO:0015986] AT2G07741ATMG00410;,ATMG01170 Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel linked together by a central stalk and a peripheral stalk. During catalysis ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel ATP synthase subunit a,Os12g0424180 protein Q8HCP2,A0A0P0Y9J5 Q8HCP2_ORYSJ,A0A0P0Y9J5_ORYSJ atp6,Os12g0424180 OSNPB_120424180 ENOG411DRS9 THRRS O04630,Q8GZ45,A0A1P8AVU9,F4IAM7 SYTM1_ARATH,SYTC_ARATH,A0A1P8AVU9_ARATH,F4IAM7_ARATH Threonine--tRNA ligase, mitochondrial 1 (EC 6.1.1.3) (AtSYT1) (Threonyl-tRNA synthetase) (ThrRS),Probable threonine--tRNA ligase, cytoplasmic (EC 6.1.1.3) (Threonyl-tRNA synthetase) (ThrRS),Threonyl-tRNA synthetase,Class II aaRS and biotin synthetases superfamily protein ARA:AT5G26830-MONOMER;,ARA:AT1G17960-MONOMER; 6.1.1.3 80936,52436,44200,19205 Threonine--tRNA ligase, mitochondrial 1 (EC 6.1.1.3) (AtSYT1) (Threonyl-tRNA synthetase) (ThrRS),Probable threonine--tRNA ligase, cytoplasmic (EC 6.1.1.3) (Threonyl-tRNA synthetase) (ThrRS),Threonyl-tRNA synthetase,Class II aaRS and biotin synthetases superfamily protein cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; threonine-tRNA ligase activity [GO:0004829]; threonyl-tRNA aminoacylation [GO:0006435],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; threonine-tRNA ligase activity [GO:0004829]; threonyl-tRNA aminoacylation [GO:0006435],cytoplasm [GO:0005737]; membrane [GO:0016020]; ATP binding [GO:0005524]; threonine-tRNA ligase activity [GO:0004829]; threonyl-tRNA aminoacylation [GO:0006435] locus:2148538;,locus:2030918;,locus:2194080; AT5G26830,AT1G17960,AT1G18130 threonyl-tRNA synthetase Os08g0295300 protein (Putative threonyl-tRNA synthetase) (cDNA clone:J023052L01, full insert sequence),Os08g0295300 protein (Fragment) Q6Z0N5,A0A0P0XED4 Q6Z0N5_ORYSJ,A0A0P0XED4_ORYSJ Os08g0295300 Os08g0295300 OJ1212_C09.6 OJ1705_A03.38 OSNPB_080295300,Os08g0295300 OSNPB_080295300 ENOG411DRS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Cyclin-T1-1 (CycT1;1) Q0E474 CCT11_ORYSJ CYCT1-1 Os02g0133000 LOC_Os02g04010 OsJ_005122 P0030G11.11 ENOG411EEBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411EGIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: wd repeat NA NA NA NA NA NA NA ENOG411EB5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB5U ACA3 Q9FYE3 ATCA3_ARATH Alpha carbonic anhydrase 3 (AtaCA3) (AtalphaCA3) (EC 4.2.1.1) (Alpha carbonate dehydratase 3) FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000250}. ARA:AT5G04180-MONOMER; R-ATH-1237044;R-ATH-1247673;R-ATH-1475029; 4.2.1.1 31398 Alpha carbonic anhydrase 3 (AtaCA3) (AtalphaCA3) (EC 4.2.1.1) (Alpha carbonate dehydratase 3) chloroplast stroma [GO:0009570]; carbonate dehydratase activity [GO:0004089]; metal ion binding [GO:0046872]; response to carbon dioxide [GO:0010037] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:17407539}. locus:2146723; AT5G04180 carbonic anhydrase NA NA NA NA NA NA NA ENOG411E7DT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E7DU DVL18,DVL15 Q8LE84,Q6IM86 Q8LE84_ARATH,Q6IM86_ARATH At5g59510 (DVL18) (ROTUNDIFOLIA like 5),DVL15 (ROTUNDIFOLIA like 4) 16235,16106 At5g59510 (DVL18) (ROTUNDIFOLIA like 5),DVL15 (ROTUNDIFOLIA like 4) shoot system development [GO:0048367] locus:2148388;,locus:4010713816; AT5G59510,AT3G46613 DVL family NA NA NA NA NA NA NA ENOG411E7DQ RPL29A,RPL29B Q9M7X7,Q84WM0,F4JC32 RL291_ARATH,RL292_ARATH,F4JC32_ARATH 60S ribosomal protein L29-1,60S ribosomal protein L29-2,60S ribosomal protein L29 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 7025,7039,9389 60S ribosomal protein L29-1,60S ribosomal protein L29-2,60S ribosomal protein L29 cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181],cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2083333;,locus:2083368; AT3G06700,AT3G06680 60S ribosomal protein 60S ribosomal protein L29 Q9FP55 Q9FP55_ORYSJ Os01g0304000 Os05g0355500 OsJ_01455 OsJ_18199 OSJNBa0036C12.10 OSNPB_010304000 OSNPB_050355500 P0475H04.12 ENOG411E7DR O23683 O23683_ARATH At2g42110 (Uncharacterized protein At2g42110) 15687 At2g42110 (Uncharacterized protein At2g42110) locus:2059994; AT2G42110 NA NA NA NA NA NA NA NA ENOG411E7DD Q3ECP9 Q3ECP9_ARATH Calcium-binding EF hand family protein 14002 Calcium-binding EF hand family protein calcium ion binding [GO:0005509] locus:2020023; AT1G54530 NA NA NA NA NA NA NA NA ENOG411E7DB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0877900 protein (cDNA clone:002-176-D06, full insert sequence) Q5N9G5 Q5N9G5_ORYSJ Os01g0877900 Os01g0877900 OSNPB_010877900 P0018C10.5 P0471B04.16 ENOG411E7DH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0254200 protein Q9S7V0 Q9S7V0_ORYSJ Os01g0254200 OsJ_01135 OSNPB_010254200 P0705D01.13 P0711E10.3 ENOG411E7DK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0499100 protein A0A0P0WXC2 A0A0P0WXC2_ORYSJ Os06g0499100 OSNPB_060499100 ENOG411E7D5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0963800 protein (Fragment) A0A0P0VD65 A0A0P0VD65_ORYSJ Os01g0963800 OSNPB_010963800 ENOG411E7D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0793900 protein (cDNA clone:001-107-E01, full insert sequence) Q8S1K8 Q8S1K8_ORYSJ Os01g0793900 OsJ_03738 OSNPB_010793900 P0684C02.12 ENOG411E7D0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWWP domain NA NA NA NA NA NA NA ENOG411E7D2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NOI protein nitrate-induced NA NA NA NA NA NA NA ENOG411E7D8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-like protein SMT3 Os07g0574500 protein (cDNA clone:002-134-H06, full insert sequence),Os07g0574200 protein Q6ZL08,A0A0P0X8C4 Q6ZL08_ORYSJ,A0A0P0X8C4_ORYSJ Os07g0574500 OJ1562_B11.113 Os07g0574500 OJ1699_E05.34 OsJ_24831 OSNPB_070574500,Os07g0574200 OSNPB_070574200 ENOG411E7D9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os06g0255500 protein (Os06g0698698 protein),Os07g0426833 protein,Os09g0344150 protein,Os04g0259125 protein,Os04g0225550 protein,Os04g0258500 protein,Os01g0553901 protein,Os02g0142925 protein,Os01g0315201 protein,Os02g0616900 protein,Os01g0137401 protein,Os08g0133451 protein,Os03g0142732 protein,Os11g0232700 protein,Os06g0255600 protein,Os08g0531450 protein,Os05g0330950 protein,Os02g0600332 protein,Os09g0405100 protein,Os05g0413662 protein,Os12g0499816 protein,Os07g0288250 protein,Os09g0420450 protein,Os01g0291966 protein,Os11g0220232 protein,Os04g0316400 protein,Os10g0319033 protein,Os12g0216766 protein,Os01g0127800 protein,Os05g0296398 protein,Os04g0326432 protein,Os05g0407350 protein,Os08g0466400 protein,Os04g0211200 protein,Os03g0694250 protein,Os08g0223866 protein,Os04g0654200 protein,Os08g0350450 protein,Os02g0474900 protein A0A0P0X0S2,A0A0P0X5F9,A0A0P0XLQ6,A0A0P0W879,A0A0N7KIP6,A0A0P0W7V5,A0A0P0V491,A0A0P0VEU8,A0A0P0V1L3,A0A0P0VLP7,A0A0P0UXZ1,A0A0P0XBS8,A0A0P0VSW6,A0A0P0Y0S9,A0A0P0WUS4,A0A0P0XIS3,A0A0P0WKW9,A0A0P0VLK3,A0A0P0XLK5,A0A0P0WMD7,A0A0N7KU26,A0A0P0X4T2,A0A0P0XN84,A0A0P0V175,A0A0N7KSM6,A0A0P0W8I3,A0A0P0XTA5,A0A0P0Y867,A0A0P0UXR9,A0A0P0WKB4,A0A0N7KIU6,A0A0P0WM78,A0A0P0XH47,A0A0P0W7F5,A0A0P0W2B9,A0A0N7KPG8,A0A0N7KJU5,A0A0P0XEV2,A0A0P0VJ03 A0A0P0X0S2_ORYSJ,A0A0P0X5F9_ORYSJ,A0A0P0XLQ6_ORYSJ,A0A0P0W879_ORYSJ,A0A0N7KIP6_ORYSJ,A0A0P0W7V5_ORYSJ,A0A0P0V491_ORYSJ,A0A0P0VEU8_ORYSJ,A0A0P0V1L3_ORYSJ,A0A0P0VLP7_ORYSJ,A0A0P0UXZ1_ORYSJ,A0A0P0XBS8_ORYSJ,A0A0P0VSW6_ORYSJ,A0A0P0Y0S9_ORYSJ,A0A0P0WUS4_ORYSJ,A0A0P0XIS3_ORYSJ,A0A0P0WKW9_ORYSJ,A0A0P0VLK3_ORYSJ,A0A0P0XLK5_ORYSJ,A0A0P0WMD7_ORYSJ,A0A0N7KU26_ORYSJ,A0A0P0X4T2_ORYSJ,A0A0P0XN84_ORYSJ,A0A0P0V175_ORYSJ,A0A0N7KSM6_ORYSJ,A0A0P0W8I3_ORYSJ,A0A0P0XTA5_ORYSJ,A0A0P0Y867_ORYSJ,A0A0P0UXR9_ORYSJ,A0A0P0WKB4_ORYSJ,A0A0N7KIU6_ORYSJ,A0A0P0WM78_ORYSJ,A0A0P0XH47_ORYSJ,A0A0P0W7F5_ORYSJ,A0A0P0W2B9_ORYSJ,A0A0N7KPG8_ORYSJ,A0A0N7KJU5_ORYSJ,A0A0P0XEV2_ORYSJ,A0A0P0VJ03_ORYSJ Os06g0698698 Os06g0255500 OSNPB_060255500 OSNPB_060698698,Os07g0426833 OSNPB_070426833,Os09g0344150 OSNPB_090344150,Os04g0259125 OSNPB_040259125,Os04g0225550 OSNPB_040225550,Os04g0258500 OSNPB_040258500,Os01g0553901 OSNPB_010553901,Os02g0142925 OSNPB_020142925,Os01g0315201 OSNPB_010315201,Os02g0616900 OSNPB_020616900,Os01g0137401 OSNPB_010137401,Os08g0133451 OSNPB_080133451,Os03g0142732 OSNPB_030142732,Os11g0232700 OSNPB_110232700,Os06g0255600 OSNPB_060255600,Os08g0531450 OSNPB_080531450,Os05g0330950 OSNPB_050330950,Os02g0600332 OSNPB_020600332,Os09g0405100 OSNPB_090405100,Os05g0413662 OSNPB_050413662,Os12g0499816 OSNPB_120499816,Os07g0288250 OSNPB_070288250,Os09g0420450 OSNPB_090420450,Os01g0291966 OSNPB_010291966,Os11g0220232 OSNPB_110220232,Os04g0316400 OSNPB_040316400,Os10g0319033 OSNPB_100319033,Os12g0216766 OSNPB_120216766,Os01g0127800 OSNPB_010127800,Os05g0296398 OSNPB_050296398,Os04g0326432 OSNPB_040326432,Os05g0407350 OSNPB_050407350,Os08g0466400 OSNPB_080466400,Os04g0211200 OSNPB_040211200,Os03g0694250 OSNPB_030694250,Os08g0223866 OSNPB_080223866,Os04g0654200 OSNPB_040654200,Os08g0350450 OSNPB_080350450,Os02g0474900 OSNPB_020474900 ENOG411EG5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein NA NA NA NA NA NA NA ENOG411EJ7U MUG13.12 Q9FF72,Q6DBF8,F4IK06 Q9FF72_ARATH,Q6DBF8_ARATH,F4IK06_ARATH At5g05020 (Gb|AAC78534.1) (Pollen Ole e 1 allergen and extensin family protein),At2g41400 (Pollen Ole e 1 allergen and extensin family protein),Pollen Ole e 1 allergen and extensin family protein 15903,16058,15788 At5g05020 (Gb|AAC78534.1) (Pollen Ole e 1 allergen and extensin family protein),At2g41400 (Pollen Ole e 1 allergen and extensin family protein),Pollen Ole e 1 allergen and extensin family protein integral component of membrane [GO:0016021] locus:2175284;,locus:2040347;,locus:2040262; AT5G05020,AT2G41400,AT2G41390 pollen Ole e 1 allergen and extensin family protein NA NA NA NA NA NA NA ENOG411EA98 GSL-OH Q9SKK4,O80851,O80850,A0A1P8B2H0,A0A1P8B2L7 GSL_ARATH,O80851_ARATH,O80850_ARATH,A0A1P8B2H0_ARATH,A0A1P8B2L7_ARATH Probable 2-oxoacid dependent dioxygenase (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein DISRUPTION PHENOTYPE: Plants exhibit a complete absence of 2-hydroxybut-3-enyl glucosinolate accumulation and a decreased resistance to generalist herbivory. {ECO:0000269|PubMed:18945935}. FUNCTION: Necessary for the hydroxylation of but-3-enyl glucosinolate to 2-hydroxybut-3-enyl glucosinolate, which is toxic to insects, bacteria and nematodes, inhibits seed germination and produces bitter flavors. {ECO:0000269|PubMed:18945935}. ARA:AT2G25450-MONOMER;MetaCyc:AT2G25450-MONOMER;,ARA:AT2G30840-MONOMER;,ARA:AT2G30830-MONOMER; 1.14.-.- 40351,40879,40196,34483,40176 Probable 2-oxoacid dependent dioxygenase (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein plasmodesma [GO:0009506]; 1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; glucosinolate biosynthetic process [GO:0019761]; regulation of glucosinolate biosynthetic process [GO:0010439],1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in leaves and seeds. All cultivars with seed-only-functional allele have low to non-detectable GSL-OH expression in the leaves. {ECO:0000269|PubMed:18945935}. locus:2040045;,locus:2052796;,locus:2052781; AT2G25450,AT2G30840,AT2G30830 2-oxoglutarate-dependent dioxygenase NA NA NA NA NA NA NA ENOG411EIYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os04g0516500 protein,Os02g0464450 protein B9FG56,A0A0P0VIS2 B9FG56_ORYSJ,A0A0P0VIS2_ORYSJ Os04g0516500 OsJ_15465 OSNPB_040516500,Os02g0464450 OSNPB_020464450 ENOG411EIYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase I-specific transcription initiation factor Rrn7 NA NA NA NA NA NA NA ENOG411EIYP MAM1,MAM3 Q9FG67,Q9FN52,A0A1P8B9L0,A0A1P8B9L6 MAM1_ARATH,MAM3_ARATH,A0A1P8B9L0_ARATH,A0A1P8B9L6_ARATH Methylthioalkylmalate synthase 1, chloroplastic (EC 2.3.3.17) (2-isopropylmalate synthase 3),Methylthioalkylmalate synthase 3, chloroplastic (EC 2.3.3.17) (2-isopropylmalate synthase 2) (Methylthioalkylmalate synthase-like),Methylthioalkylmalate synthase 1 lacking C6 C7 and C8 aliphatic glucosinolates in the leaves,recessive phenotype consisting of a 90% reduction in C8 glucosinolates. also reductions in the levels of C7 glucosinolates Abnormal glucosinolate composition-T. Mitchell-Olds-2001,Low C8 glucosinolate levels-J. Gershenzon-2007 FUNCTION: Determines the side chain length of aliphatic glucosinolate structures. Catalyzes exclusively the condensation reactions of both the first and second methionine carbon chain elongation. {ECO:0000269|PubMed:14740211, ECO:0000269|PubMed:16754868}.,FUNCTION: Determines the side chain length of aliphatic glucosinolate structures. Accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates. Also able to convert pyruvate to citramalate, 2-oxoisovalerate to isopropylmalate, 4-methyl-2-oxopentanoate and 5-methyl-2-oxohexanoate for Leu-derived glucosinolates, 3-methyl-2-oxopentanoate for Ile-derived glucosinolates and phenylpyruvate to phenylethylglucosinolate. {ECO:0000269|PubMed:15155874, ECO:0000269|PubMed:17369439}. MISCELLANEOUS: The 5'-part of the gene encoding this protein is deleted in cv. Bl-0, cv. Di-G, cv. Landsberg erecta and cv. Petergof, while the complete gene is missing in cv. Ka-0, cv. Lip-0, cv. No-0, cv. Sei-0, cv. Tsu-1 and cv. Wl-0.,MISCELLANEOUS: Constitutes an insect resistance quantitative trait locus, caused by variation in glucosinolate profiles conferred by polymorphism of MAM alleles. MetaCyc:AT5G23010-MONOMER;,MetaCyc:AT5G23020-MONOMER; 2.3.3.13; 2.3.3.17 55125,55230,55410,58382 Methylthioalkylmalate synthase 1, chloroplastic (EC 2.3.3.17) (2-isopropylmalate synthase 3),Methylthioalkylmalate synthase 3, chloroplastic (EC 2.3.3.17) (2-isopropylmalate synthase 2) (Methylthioalkylmalate synthase-like),Methylthioalkylmalate synthase 1 chloroplast [GO:0009507]; 2-(2'-methylthio)ethylmalate synthase activity [GO:0010177]; carboxylic acid metabolic process [GO:0019752]; glucosinolate biosynthetic process [GO:0019761]; response to insect [GO:0009625]; response to water deprivation [GO:0009414],chloroplast [GO:0009507]; 2-(2'-methylthio)ethylmalate synthase activity [GO:0010177]; 2-isopropylmalate synthase activity [GO:0003852]; glucosinolate biosynthetic process [GO:0019761]; leucine biosynthetic process [GO:0009098],transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [GO:0046912]; carboxylic acid metabolic process [GO:0019752] TISSUE SPECIFICITY: Highly expressed in leaves, flowers, roots and siliques. Not detected in flowers in PubMed:12432038. {ECO:0000269|PubMed:12432038, ECO:0000269|PubMed:17369439}.,TISSUE SPECIFICITY: Highly expressed in roots, leaves, and siliques. Lower amounts in stems and flowers. {ECO:0000269|PubMed:12432038, ECO:0000269|PubMed:17369439}. locus:2181151;,locus:2178317; AT5G23010,AT5G23020 HMGL-like NA NA NA NA NA NA NA ENOG411EI0K RALFL30 A7REH2 RLF30_ARATH Protein RALF-like 30 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 8217 Protein RALF-like 30 apoplast [GO:0048046]; intracellular [GO:0005622]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] locus:4010713882; AT4G13075 Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EG53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411ECS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene insensitive 3 EIL transcription factor (Ethylene-insensitive-3-like protein) (Os07g0685700 protein) (Putative transcription factor OsEIL2) (cDNA clone:001-033-G01, full insert sequence) Q8W3L9 Q8W3L9_ORYSJ OsEIL2 OJ1200_C08.104 Os07g0685700 OsJ_25629 OSNPB_070685700 ENOG411ECS9 Q9FKD0,Q9LS10,Q9FKC8,A0A1P8BF88,A0A1P8BF92 MT797_ARATH,MT810_ARATH,MT799_ARATH,A0A1P8BF88_ARATH,A0A1P8BF92_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37970 (EC 2.1.1.-),Probable S-adenosylmethionine-dependent methyltransferase At5g38100 (EC 2.1.1.-),Probable S-adenosylmethionine-dependent methyltransferase At5g37990 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ARA:AT5G37970-MONOMER;,ARA:AT5G38100-MONOMER;,ARA:AT5G37990-MONOMER; 2.1.1.- 41414,40945,41025,28485,38335 Probable S-adenosylmethionine-dependent methyltransferase At5g37970 (EC 2.1.1.-),Probable S-adenosylmethionine-dependent methyltransferase At5g38100 (EC 2.1.1.-),Probable S-adenosylmethionine-dependent methyltransferase At5g37990 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168],methyltransferase activity [GO:0008168] locus:2144461; AT5G37970,AT5G38100,AT5G37990 SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EEVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ty1-copia subclass NA NA NA NA NA NA NA ENOG411EEVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EEVI ERF011 Q9SNE1 ERF11_ARATH Ethylene-responsive transcription factor ERF011 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 17008 Ethylene-responsive transcription factor ERF011 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; ethylene-activated signaling pathway [GO:0009873]; regulation of cell death [GO:0010941]; response to bacterium [GO:0009617]; response to chitin [GO:0010200]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] locus:2074765; AT3G50260 cooperatively regulated by ethylene and jasmonate 1 NA NA NA NA NA NA NA ENOG411EEVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411EEVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os09g0547100 protein (Putative auxin induced protein) (cDNA clone:001-017-D04, full insert sequence) Q651Q2 Q651Q2_ORYSJ Os09g0547100 OsJ_30222 OSJNBa0038K02.19 OSNPB_090547100 ENOG411EEVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EEVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0138000 protein A0A0P0XS80 A0A0P0XS80_ORYSJ Os10g0138000 OSNPB_100138000 ENOG411ECSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein Os01g0518701 protein,Os01g0518651 protein A0A0N7KD25,A0A0P0V3B0 A0A0N7KD25_ORYSJ,A0A0P0V3B0_ORYSJ Os01g0518701 OSNPB_010518701,Os01g0518651 OSNPB_010518651 ENOG411ECSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411ECSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter C family member 12 NA NA NA NA NA NA NA ENOG411EC6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRA NA NA NA NA NA NA NA ENOG411EEV9 Q9FFW4 FBD16_ARATH Putative FBD-associated F-box protein At5g38570 44055 Putative FBD-associated F-box protein At5g38570 locus:2159883; AT5G38570 Inherit from euNOG: FBD-associated F-box protein NA NA NA NA NA NA NA ENOG411E2V6 F4IVV8 F4IVV8_ARATH Ribonuclease H2 subunit C-like protein 18141 Ribonuclease H2 subunit C-like protein ribonuclease H2 complex [GO:0032299]; RNA catabolic process [GO:0006401] locus:2039687; AT2G39440 ribonuclease H2 subunit Os02g0168900 protein Q6H6D0 Q6H6D0_ORYSJ Os02g0168900 Os02g0168900 OsJ_05541 OSNPB_020168900 P0669G09.16 ENOG411E2V1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pheophorbide a oxygenase NA NA NA NA NA NA NA ENOG411E2V8 MBB18.20,F1N21.15 Q9FFV7,Q94B05 Q9FFV7_ARATH,Q94B05_ARATH Gb|AAB95243.1 (Proteasome maturation factor UMP1) (Uncharacterized protein At5g38650),At1g67250 (Proteasome maturation factor UMP1) (Uncharacterized protein At1g67250/F1N21_7) (Uncharacterized protein F1N21.15) 15811,15736 Gb|AAB95243.1 (Proteasome maturation factor UMP1) (Uncharacterized protein At5g38650),At1g67250 (Proteasome maturation factor UMP1) (Uncharacterized protein At1g67250/F1N21_7) (Uncharacterized protein F1N21.15) cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome assembly [GO:0043248] locus:2159878;,locus:2019599; AT5G38650,AT1G67250 proteasome maturation factor UMP1 family protein Os02g0800500 protein (Os02g0801200 protein) (Os02g0801300 protein),Os02g0800100 protein (Proteasome maturation factor-like) (cDNA clone:J023030M09, full insert sequence),Os09g0314900 protein,Os03g0583700 protein A0A0N7KG97,Q69IK6,A0A0P0XKD8,A0A0P0W0C2 A0A0N7KG97_ORYSJ,Q69IK6_ORYSJ,A0A0P0XKD8_ORYSJ,A0A0P0W0C2_ORYSJ Os02g0800500 Os02g0801200 Os02g0801300 OSNPB_020800500 OSNPB_020801200 OSNPB_020801300,Os02g0800100 OsJ_08748 OSJNBa0032L17.7 OSNPB_020800100,Os09g0314900 OSNPB_090314900,Os03g0583700 OSNPB_030583700 ENOG411E2VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family Os11g0703100 protein (Thaumatin family protein, expressed) (cDNA, clone: J100071A15, full insert sequence) Q2QZ50 Q2QZ50_ORYSJ LOC_Os11g47680 Os11g0703100 OSNPB_110703100 ENOG411E2VU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-responsive protein Auxin-responsive protein IAA1 (Indoleacetic acid-induced protein 1) Q5VRD1 IAA1_ORYSJ IAA1 Os01g0178500 LOC_Os01g08320 P0406H10.6-1 P0509B06.8-1 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E2VT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2Fe-2S iron-sulfur cluster binding domain Ferredoxin Q7XVG7 Q7XVG7_ORYSJ Os04g0412200 OsJ_14726 OSJNBa0073L04.7 OSNPB_040412200 FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. {ECO:0000256|RuleBase:RU364001}. ENOG411E2VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain Os10g0478450 protein (Fragment),Os10g0478500 protein (Fragment) A0A0P0XVB9,A0A0P0XVD0 A0A0P0XVB9_ORYSJ,A0A0P0XVD0_ORYSJ Os10g0478450 OSNPB_100478450,Os10g0478500 OSNPB_100478500 ENOG411E2VQ Q9M042,A0A1P8BD35,B3H785 Q9M042_ARATH,A0A1P8BD35_ARATH,B3H785_ARATH PEBP (Phosphatidylethanolamine-binding protein) family protein (Uncharacterized protein At5g01300) (Uncharacterized protein T10O8_10),PEBP (Phosphatidylethanolamine-binding protein) family protein 17823,15539,14156 PEBP (Phosphatidylethanolamine-binding protein) family protein (Uncharacterized protein At5g01300) (Uncharacterized protein T10O8_10),PEBP (Phosphatidylethanolamine-binding protein) family protein locus:2179117; AT5G01300 UPF0098 protein Os05g0468800 protein Q0DHF7 Q0DHF7_ORYSJ Os05g0468800 Os05g0468800 OSNPB_050468800 ENOG411E2VP CSD3 Q9FK60 SODC3_ARATH Superoxide dismutase [Cu-Zn] 3 (EC 1.15.1.1) (Copper/zinc superoxide dismutase 3) FUNCTION: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. {ECO:0000250}. Prion diseases (05020),Peroxisome (04146),Amyotrophic lateral sclerosis (ALS) (05014),Huntington's disease (05016) 1.15.1.1 16941 Superoxide dismutase [Cu-Zn] 3 (EC 1.15.1.1) (Copper/zinc superoxide dismutase 3) extracellular space [GO:0005615]; peroxisome [GO:0005777]; vacuole [GO:0005773]; copper ion binding [GO:0005507]; superoxide dismutase activity [GO:0004784]; zinc ion binding [GO:0008270]; cellular response to high light intensity [GO:0071486]; cellular response to light intensity [GO:0071484]; cellular response to ozone [GO:0071457]; cellular response to salt stress [GO:0071472]; cellular response to UV-B [GO:0071493]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in leaves (at protein level). {ECO:0000269|PubMed:9765550}. locus:2172324; AT5G18100 Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) Os03g0219200 protein (Fragment) Q0DTX5 Q0DTX5_ORYSJ Os03g0219200 Os03g0219200 OSNPB_030219200 ENOG411E2VY MAC12.6 Q9FFX8 Q9FFX8_ARATH AT5g13970/MAC12_6 (Emb|CAB86638.1) (Midasin-like protein) 45743 AT5g13970/MAC12_6 (Emb|CAB86638.1) (Midasin-like protein) locus:2159138; AT5G13970 NA Os04g0397400 protein (Fragment) Q0JDK7 Q0JDK7_ORYSJ Os04g0397400 Os04g0397400 OSNPB_040397400 ENOG411E2VG STN1 Q9LMK5 STN1_ARATH CST complex subunit STN1 (Suppressor of cdc thirteen homolog) (AtSTN1) DISRUPTION PHENOTYPE: Plants display an immediate onset of growth and developmental defects and reduced fertility, probably due to impaired telomeres (PubMed:19064932). In nearly all mutants, apical dominance is completely abolished, leading to multiple inflorescence bolts that are often fused (PubMed:19064932). In addition, floral phyllotaxy is perturbed and siliques develop at irregular positions on the inflorescence bolt (PubMed:19064932). Moreover, leaf size is substantially reduced, likely reflecting defects in cell proliferation (PubMed:19064932). These effects are accompanied by catastrophic loss of telomeric and subtelomeric DNA, high levels of end-to-end chromosome fusions, increased G-overhang signals, and elevated telomere recombination (PubMed:19064932). Progressive loss of telomeric DNA and gradual onset of telomere dysfunction (PubMed:25299252). Hindered re-replication of heterochromatic regions (PubMed:25299252). {ECO:0000269|PubMed:19064932, ECO:0000269|PubMed:25299252}. Plants exhibit loss of apical dominance fasciation abberrant phyllotaxy and reduced leaf size. Over generations the germination rate also decreases to below 20%. Fasciated stems and inflorescences; Increased branching; Small leaves; Abnormal floral phyllotaxy; Reduced fertility; Second generation: Very low germination rate and early developmental arrest due to short and eroding telomeres-D. Shippen-2008 FUNCTION: Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves (PubMed:19064932). Associates with enzymatically active telomerase (PubMed:25329641). Plays a genomewide role in DNA replication and facilitates re-replication at non-telomeric loci (PubMed:25299252). {ECO:0000269|PubMed:19064932, ECO:0000269|PubMed:25299252, ECO:0000269|PubMed:25329641}. 17598 CST complex subunit STN1 (Suppressor of cdc thirteen homolog) (AtSTN1) nuclear chromosome, telomeric region [GO:0000784]; DNA binding [GO:0003677]; telomere capping [GO:0016233] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:19064932}. locus:2007352; AT1G07130 CST complex subunit OB-fold nucleic acid binding domain containing protein, expressed (Os03g0366900 protein) (cDNA clone:J023098J07, full insert sequence) Q10KX7 Q10KX7_ORYSJ LOC_Os03g25130 Os03g0366900 OsJ_10972 OSNPB_030366900 ENOG411E2VE NGA1 O82799 NGA1_ARATH B3 domain-containing transcription factor NGA1 (Protein NGATHA 1) FUNCTION: Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. 34890 B3 domain-containing transcription factor NGA1 (Protein NGATHA 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; leaf development [GO:0048366]; regulation of leaf morphogenesis [GO:1901371]; transcription, DNA-templated [GO:0006351] locus:2041404; AT2G46870 B3 domain-containing B3 domain-containing protein Os04g0581400,B3 domain-containing protein Os02g0683500,Putative B3 domain-containing protein Os02g0455900,Os04g0581400 protein Q7F9W2,Q6EU30,Q6K3B1,A0A0P0WDY0 Y4814_ORYSJ,Y2835_ORYSJ,Y2559_ORYSJ,A0A0P0WDY0_ORYSJ Os04g0581400 LOC_Os04g49230 OSJNBa0088A01.1,Os02g0683500 LOC_Os02g45850 OJ1123_G04.23,Os02g0455900 LOC_Os02g25830 OSJNBa0008C07.36 OSJNBa0063K04.12,Os04g0581400 OSNPB_040581400 ENOG411E2VD AEL1 A8MR89 AEL1_ARATH Protein AE7-like 1 (MIP18 family protein At3g50845) FUNCTION: May play a role in chromosome segregation through establishment of sister chromatid cohesion (By similarity). Unable to complement ae7 mutants, and thus probably not involved in the cytosolic iron-sulfur assembly (CIA) pathway (PubMed:23104832). {ECO:0000250|UniProtKB:Q9D187, ECO:0000269|PubMed:23104832}. 17645 Protein AE7-like 1 (MIP18 family protein At3g50845) iron-sulfur cluster assembly [GO:0016226] locus:4010713823; AT3G50845 Domain of unknown function DUF59 Expressed protein (Os03g0775500 protein) (cDNA clone:J033072G07, full insert sequence) Q8H8N1 Q8H8N1_ORYSJ Os03g0775500 LOC_Os03g56410 Os03g0775500 OsJ_12774 OSJNBa0070N04.16 OSNPB_030775500 ENOG411E2VC Q9C7P9,F4KHI4 Q9C7P9_ARATH,F4KHI4_ARATH AWPM-19-like family protein (Plasma membrane associated protein, putative; 66162-66952) (Putative plasma membrane associated protein),AWPM-19-like family protein 16813,16812 AWPM-19-like family protein (Plasma membrane associated protein, putative; 66162-66952) (Putative plasma membrane associated protein),AWPM-19-like family protein integral component of membrane [GO:0016021] locus:2013708;,locus:2151486; AT1G29520,AT5G46530 AWPM-19-like membrane family protein Os01g0699900 protein (Plasma membrane associated protein-like) (cDNA clone:J013120F13, full insert sequence) Q943A6 Q943A6_ORYSJ Os01g0699900 Os01g0699900 OSNPB_010699900 P0454A11.19 ENOG411E2VB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411E2VK CHLORORESPIRATORY REDUCTION 41 Q9C685 Q9C685_ARATH At1g51100 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel protein) (Uncharacterized protein At1g51100) (Uncharacterized protein F23H24.6) 24161 At1g51100 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel protein) (Uncharacterized protein At1g51100) (Uncharacterized protein F23H24.6) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2026068; AT1G51100 NA Os01g0676200 protein (cDNA clone:006-304-E10, full insert sequence) (cDNA clone:J023054M21, full insert sequence) Q8LQP4 Q8LQP4_ORYSJ Os01g0676200 Os01g0676200 OJ1117_G01.17 OsJ_02992 OSNPB_010676200 ENOG411E028 M3KE1,MAP3KE2,MAPKKK6 Q9LJD8,Q9SFB6,A0A1I9LPC3,A0A1I9LPC2 M3KE1_ARATH,M3KE2_ARATH,A0A1I9LPC3_ARATH,A0A1I9LPC2_ARATH MAP3K epsilon protein kinase 1 (AtM3KE1) (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase 7),MAP3K epsilon protein kinase 2 (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase 6),Mitogen-activated protein kinase kinase kinase 6 DISRUPTION PHENOTYPE: Pollen lethality in plants lacking both MAP3KE1 and MAP3KE2, associated with plasma membrane irregularities following pollen mitosis I (PubMed:16965555). Smaller plants with shorter roots due to reduced cell elongation in roots and reduced cell expansion in rosette leaves, as well as embryos arrest in the early stages of development (PubMed:23087695). {ECO:0000269|PubMed:16965555, ECO:0000269|PubMed:23087695}. no abnormal phenotype was observed in homozygous plants when grown under standard conditions,homozygous double mutants are pollen lethal FUNCTION: Serine/threonine-protein kinase involved in the spatial and temporal control system organizing cortical activities in mitotic and postmitotic cells (PubMed:11489177, PubMed:15292395). Required for the normal functioning of the plasma membrane in developing pollen (PubMed:16965555). Involved in the regulation of cell expansion, cell elongation, and embryo development (PubMed:23087695). {ECO:0000269|PubMed:11489177, ECO:0000269|PubMed:15292395, ECO:0000269|PubMed:16965555, ECO:0000269|PubMed:23087695}.,FUNCTION: Serine/threonine-protein kinase involved in the spatial and temporal control system organizing cortical activities in mitotic and postmitotic cells (PubMed:15292395). Required for the normal functioning of the plasma membrane in developing pollen (PubMed:16965555). Involved in the regulation of cell expansion and embryo development (PubMed:23087695). {ECO:0000269|PubMed:15292395, ECO:0000269|PubMed:16965555, ECO:0000269|PubMed:23087695}. 2.7.11.1 151177,151137,130468,148931 MAP3K epsilon protein kinase 1 (AtM3KE1) (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase 7),MAP3K epsilon protein kinase 2 (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase 6),Mitogen-activated protein kinase kinase kinase 6 cytosol [GO:0005829]; microtubule organizing center [GO:0005815]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein autophosphorylation [GO:0046777]; regulation of cell division [GO:0051302]; regulation of embryonic development [GO:0045995]; regulation of extent of cell growth [GO:0061387]; regulation of mitotic cell cycle [GO:0007346]; regulation of unidimensional cell growth [GO:0051510]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],microtubule organizing center [GO:0005815]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein autophosphorylation [GO:0046777]; regulation of cell division [GO:0051302]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] DEVELOPMENTAL STAGE: Expressed during embryo development. {ECO:0000269|PubMed:23087695}. TISSUE SPECIFICITY: Expressed in both the sporophytic and the gametophytic tissues, especially in dividing cells. Mostly present in flower buds and mature flowers. Accumulates also in embryos, in roots apices, trichomes and ovule integuments. {ECO:0000269|PubMed:11489177, ECO:0000269|PubMed:15292395, ECO:0000269|PubMed:19123141, ECO:0000269|PubMed:23087695}.,TISSUE SPECIFICITY: Expressed in both the sporophytic and the gametophytic tissues, especially in dividing cells. Mostly present in flower buds and mature flowers. Accumulates also in embryos and in roots. {ECO:0000269|PubMed:11489177, ECO:0000269|PubMed:15292395, ECO:0000269|PubMed:23087695}. locus:2092890;,locus:2077417; AT3G13530,AT3G07980 serine threonine-protein kinase sepA-like OSJNBa0015K02.14 protein (Os04g0660500 protein) (cDNA clone:J013107K18, full insert sequence) Q7XR00 Q7XR00_ORYSJ Os04g0660500 Os04g0660500 OSJNBa0015K02.14 OSNPB_040660500 ENOG411E021 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411E020 F4K402,A0A1P8BES5,A0A1P8BET4 F4K402_ARATH,A0A1P8BES5_ARATH,A0A1P8BET4_ARATH Uncharacterized protein 129476,131564,132312 Uncharacterized protein AT5G13590 NA NA NA NA NA NA NA NA ENOG411E023 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os08g0374701 protein (Receptor kinase-like),Os11g0667700 protein (Fragment),Os08g0374600 protein Q6ZDH7,A0A0P0Y544,A0A0P0XF07 Q6ZDH7_ORYSJ,A0A0P0Y544_ORYSJ,A0A0P0XF07_ORYSJ P0436B06.7 Os08g0374701 OSNPB_080374701,Os11g0667700 OSNPB_110667700,Os08g0374600 OSNPB_080374600 ENOG411E022 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type II intron maturase Os12g0407300 protein,Os06g0542000 protein (Fragment) B9GCS6,A0A0P0WXP6 B9GCS6_ORYSJ,A0A0P0WXP6_ORYSJ Os12g0407300 OsJ_35840 OSNPB_120407300,Os06g0542000 OSNPB_060542000 ENOG411E025 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphofructokinase NA NA NA NA NA NA NA ENOG411E027 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ Os04g0286366 protein B9FE94 B9FE94_ORYSJ Os04g0286366 OsJ_14140 OSNPB_040286366 ENOG411E026 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinesterase NA NA NA NA NA NA NA ENOG411E02I Q9LYE4 Q9LYE4_ARATH At5g11460 (Uncharacterized protein F15N18_50) 37869 At5g11460 (Uncharacterized protein F15N18_50) locus:2144246; AT5G11460 Protein of unknown function (DUF581) Os01g0180400 protein (Fragment) A0A0P0UYW7 A0A0P0UYW7_ORYSJ Os01g0180400 OSNPB_010180400 ENOG411E02H Q8LPS6 PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 59883 Pentatricopeptide repeat-containing protein At1g02150 chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2204793; AT1G02150 Pentatricopeptide repeat-containing protein OSJNBb0038F03.9 protein (Os04g0544400 protein) Q7XN02 Q7XN02_ORYSJ OSJNBb0038F03.9 Os04g0544400 OSNPB_040544400 ENOG411E02K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0168400 protein (Fragment) A0A0P0VF70 A0A0P0VF70_ORYSJ Os02g0168400 OSNPB_020168400 ENOG411E02J Q8LGB4 Q8LGB4_ARATH Protein kinase superfamily protein (Protein kinase-like protein) 60218 Protein kinase superfamily protein (Protein kinase-like protein) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2156050; AT5G37790 proline-rich receptor-like protein kinase NA NA NA NA NA NA NA ENOG411E02M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA linker histone H1 and H5 family Os05g0597200 protein (Fragment) A0A0P0WRW9 A0A0P0WRW9_ORYSJ Os05g0597200 OSNPB_050597200 ENOG411E02N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lysine histidine transporter 1-like NA NA NA NA NA NA NA ENOG411E02A A0A1P8AU40,F4I1X9,F4I1X8 A0A1P8AU40_ARATH,F4I1X9_ARATH,F4I1X8_ARATH Coiled-coil protein R-ATH-8951664; 42650,47957,56883 Coiled-coil protein cullin family protein binding [GO:0097602]; positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:2000060] locus:2012025; AT1G55830 Protein of unknown function (DUF812) NA NA NA NA NA NA NA ENOG411E02C MUA2.19 Q9FKL3 Q9FKL3_ARATH Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein (Similarity to protein kinase) 117444 Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein (Similarity to protein kinase) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2174552; AT5G57610 Protein kinase domain containing protein expressed Os02g0786200 protein (Fragment) A0A0P0VQR0 A0A0P0VQR0_ORYSJ Os02g0786200 OSNPB_020786200 ENOG411E02B RGTA2,RGTA1 Q9FJ32,Q8VYB7 PGTA2_ARATH,PGTA1_ARATH Geranylgeranyl transferase type-2 subunit alpha 2 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit alpha 2) (Rab geranylgeranyl transferase alpha subunit 2) (AtRGTA2) (Rab-GGT alpha 2),Geranylgeranyl transferase type-2 subunit alpha 1 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit alpha 1) (Rab geranylgeranyl transferase alpha subunit 1) (AtRGTA1) (Rab-GGT alpha 1) FUNCTION: Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2 (By similarity). Does not seem to be a functional Rab-GGT alpha subunit in vitro (PubMed:26589801). {ECO:0000250|UniProtKB:Q8VYB7, ECO:0000269|PubMed:26589801}.,FUNCTION: Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2 (PubMed:26589801). In vitro, can prenylate PGGTI targets with the C-terminal Cys-aliphatic-aliphatic-X (CaaX) with leucine in the terminal position. Substrates with the C-terminal sequence -CSIL such as ARAC11/ROP1 or GG2/AGG2 are prenylated independently of REP and when the alpha subunit is associated with a beta subunit (RGTB1 or RGTB2) (PubMed:26589801). {ECO:0000269|PubMed:26589801}. R-ATH-6803205;R-ATH-8873719; 2.5.1.60 79141,76909 Geranylgeranyl transferase type-2 subunit alpha 2 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit alpha 2) (Rab geranylgeranyl transferase alpha subunit 2) (AtRGTA2) (Rab-GGT alpha 2),Geranylgeranyl transferase type-2 subunit alpha 1 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit alpha 1) (Rab geranylgeranyl transferase alpha subunit 1) (AtRGTA1) (Rab-GGT alpha 1) Rab-protein geranylgeranyltransferase complex [GO:0005968]; Rab geranylgeranyltransferase activity [GO:0004663]; protein geranylgeranylation [GO:0018344],cytosol [GO:0005829]; Rab-protein geranylgeranyltransferase complex [GO:0005968]; Rab geranylgeranyltransferase activity [GO:0004663]; protein geranylgeranylation [GO:0018344]; response to cadmium ion [GO:0046686] locus:2153015;,locus:2121860; AT5G41820,AT4G24490 rab geranylgeranyl transferase like protein Os06g0677500 protein (Putative Rab geranylgeranyl transferase, a subunit) Q653U7 Q653U7_ORYSJ Os06g0677500 Os06g0677500 B1153E06.21 OsJ_22355 OSNPB_060677500 P0710B08.15 ENOG411E02E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potassium channel Os01g0696100 protein (Putative outwardly rectifying potassium channel) B5BNY0 B5BNY0_ORYSJ Osrok Os01g0696100 OSNPB_010696100 ENOG411E02D A0A1P8ASE2,F4I6D2,F4I6D1,A0A1P8ASE3 A0A1P8ASE2_ARATH,F4I6D2_ARATH,F4I6D1_ARATH,A0A1P8ASE3_ARATH S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 13669,26695,24577,26542 S-adenosyl-L-methionine-dependent methyltransferase superfamily protein methyltransferase activity [GO:0008168]; 7-methylguanosine RNA capping [GO:0009452]; RNA methylation [GO:0001510] locus:2028180; AT1G30550 RNA cap guanine-N2 methyltransferase Os06g0187100 protein A0A0P0WT85 A0A0P0WT85_ORYSJ Os06g0187100 OSNPB_060187100 ENOG411E02G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats wheat rice and barley. They can account for up to 70 by weight of the wall (By similarity) Probable mixed-linked glucan synthase 3 (EC 2.4.1.-) (1,3;1,4-beta-D-glucan synthase 3) (Cellulose synthase-like protein F3) (OsCslF3) Q6ZF85 CSLF3_ORYSJ CSLF3 Os07g0553400 LOC_Os07g36750 OsJ_023724 P0013G11.12 FUNCTION: May catalyze both beta-1,3 and beta-1,4 glycosidic linkage on beta-D-glucan. Essential for (1,3;1,4)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats, wheat, rice and barley. They can account for up to 70% by weight of the wall (By similarity). {ECO:0000250}. ENOG411E02F F4I9G2,F4I9G3 F4I9G2_ARATH,F4I9G3_ARATH Inactive purple acid phosphatase-like protein 48975,46849 Inactive purple acid phosphatase-like protein chloroplast stroma [GO:0009570]; starch grain [GO:0043036]; starch binding [GO:2001070]; regulation of starch metabolic process [GO:2000904] locus:2035898; AT1G42430 NA Os03g0133300 protein A0A0P0VSN7 A0A0P0VSN7_ORYSJ Os03g0133300 OSNPB_030133300 ENOG411E02Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0183500 protein (Fragment),Os06g0645600 protein (Fragment),Os04g0647550 protein A0A0P0VFR5,A0A0P0WZM6,A0A0N7KJT6 A0A0P0VFR5_ORYSJ,A0A0P0WZM6_ORYSJ,A0A0N7KJT6_ORYSJ Os02g0183500 OSNPB_020183500,Os06g0645600 OSNPB_060645600,Os04g0647550 OSNPB_040647550 ENOG411E02Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family HVA22-like protein Q6YUX5,Q67WL5 Q6YUX5_ORYSJ,Q67WL5_ORYSJ Os02g0747500 OsJ_08376 OSJNBa0078N11.18 OSJNBb0024K03.30 OSNPB_020747500,Os06g0226600 Os06g0226600 OSNPB_060226600 P0425F05.2 P0690H04.26 ENOG411E02P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0683900 protein (cDNA clone:001-123-E04, full insert sequence) Q655G3 Q655G3_ORYSJ Os06g0683900 Os06g0683900 OsJ_22403 OSNPB_060683900 P0009H10.14 ENOG411E02S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0481 protein Os01g0564600 protein Q656U9 Q656U9_ORYSJ Os01g0564600 Os01g0564600 OsJ_02252 OSJNBb0049O23.6 OSNPB_010564600 P0697C12.2 ENOG411E02R Q9LYT2,F4J741 PP287_ARATH,F4J741_ARATH Pentatricopeptide repeat-containing protein At3g59040,Tetratricopeptide repeat (TPR)-like superfamily protein 66161,67209 Pentatricopeptide repeat-containing protein At3g59040,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2077735; AT3G59040 Pentatricopeptide repeat-containing protein Os08g0191900 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J013112C20, full insert sequence) (cDNA clone:J013116C12, full insert sequence) Q6Z1D0 Q6Z1D0_ORYSJ Os08g0191900 OsJ_26318 OSJNBa0056O06.11 OSNPB_080191900 ENOG411E02U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411E02T Q8L612 MACP1_ARATH MACPF domain-containing protein At1g14780 FUNCTION: Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity. {ECO:0000250}. 69917 MACPF domain-containing protein At1g14780 plant-type hypersensitive response [GO:0009626] locus:2006807; AT1G14780 Membrane attack complex component perforin complement C9 Os02g0736300 protein,Os06g0251100 protein Q6Z745,A0A0P0WVA3 Q6Z745_ORYSJ,A0A0P0WVA3_ORYSJ Os02g0736300 OsJ_08302 OSNPB_020736300 P0487D09.21,Os06g0251100 OSNPB_060251100 ENOG411E02W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0167200 protein (Putative RING finger 1) Q5VRG7 Q5VRG7_ORYSJ Os06g0167200 Os06g0167200 OSJNBa0033B09.1 OSNPB_060167200 P0680A03.22 ENOG411E02V A0A1P8B4J0 A0A1P8B4J0_ARATH Uncharacterized protein 31800 Uncharacterized protein NA NA NA NA NA NA NA NA ENOG411EH21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH20 CLV3 Q9XF04,Q3E6N8 CLV3_ARATH,Q3E6N8_ARATH Protein CLAVATA 3 [Cleaved into: MCLV3],CLAVATA3 Triple mutant shows greater suppression of the clv3-2 with approximately 4.3 carpels per flower compared to clv3-2 single mutants which have approximately 6.7 carpels per flower.,Number of carpels reduced relative to clv3 single mutant.,Reduced number of carpels relative to clv3 single mutant.,trn2-23010 clv3-2 double mutant flowers also exhibited an additive phenotype not observed in single clv3-2 or trn2-23010 plants: double mutant flowers had reduced organ numbers in sepal petal and stamen whorls reminiscent of trn2-23010 single mutant flowers and in contrast to clv3-2 single mutant flowers there was no increase in the number of stamens. However in the fourth whorl where trn2 loss-of-function interferes with the fusion of two carpels to the single style double mutant flowers were comprised of multiple carpels most of them fused (73%) as typically found in the clv3-2 mutation. Supernumerary stem cells in clv3-2 mutant floral meristems therefore not only led to the initiation of multiple carpels in the trn2 background but also favoured their fusion to a single style which remained severely twisted. In addition to a style consisting of multiple carpels over-proliferating callus-type tissue was observed at the tip of the style in all flowers. Fasciated stems and inflorescences; Increased floral organ number; Large shoot and floral meristems-E. Meyerowitz-1999 FUNCTION: Extracellular signal that regulates meristem maintenance. Acts with CLV1 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.; FUNCTION: The secreted peptide MCLV3 activates a signal transduction cascade to restrict WUSCHEL (WUS) expression, inducing shoot and root meristem consumption as cells differentiated into other organs. MISCELLANEOUS: His-81 seems to be essential for the activity of MCLV3. 10871,10958 Protein CLAVATA 3 [Cleaved into: MCLV3],CLAVATA3 apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; innate immune response [GO:0045087]; maintenance of meristem identity [GO:0010074]; meristem development [GO:0048507]; multicellular organism development [GO:0007275]; regulation of meristem structural organization [GO:0009934] TISSUE SPECIFICITY: First detected in heart stage embryos in a patch of cells between the developing cotyledons. In vegetative and inflorescence meristems, expressed in a small cone of cells at the meristem apex. locus:2005502; AT2G27250 NA NA NA NA NA NA NA NA ENOG411EH23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH26 AGL33 O64840 O64840_ARATH AGAMOUS-like 33 (MADS-box protein (AGL33)) (MADS-box protein AGL33) 12975 AGAMOUS-like 33 (MADS-box protein (AGL33)) (MADS-box protein AGL33) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2057741; AT2G26320 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EH29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-like protein (Os02g0511200 protein) Q6K786 Q6K786_ORYSJ Os02g0511200 OsJ_06874 OSJNBa0001A11.14 OSNPB_020511200 ENOG411EH28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0566450 protein (Fragment) A0A0P0WDN2 A0A0P0WDN2_ORYSJ Os04g0566450 OSNPB_040566450 ENOG411EH2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Cytosine-specific methyltransferase NA NA NA NA NA NA NA ENOG411EH2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inositol monophosphatase family NA NA NA NA NA NA NA ENOG411EH2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411EH2S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os02g0686700 protein Q6ZHB9 Q6ZHB9_ORYSJ Os02g0686700 Os02g0686700 OJ1717_A09.39 OsJ_07969 OSNPB_020686700 ENOG411EH2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EH2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os04g0111500 protein A0A0P0W651,A0A0P0W6J1 A0A0P0W651_ORYSJ,A0A0P0W6J1_ORYSJ Os04g0111500 OSNPB_040111500 ENOG411EM99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: extended synaptotagmin-like protein NA NA NA NA NA NA NA ENOG411EFQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WGS project CAID00000000 data contig chromosome NA NA NA NA NA NA NA ENOG411EHNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MutS domain V NA NA NA NA NA NA NA ENOG411EHNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRED F7A19.6 Q9XI89 Q9XI89_ARATH Beta-hexosaminidase (DUF1336) (F7A19.6 protein) (Uncharacterized protein At1g13970) 57593 Beta-hexosaminidase (DUF1336) (F7A19.6 protein) (Uncharacterized protein At1g13970) locus:2014819; AT1G13970 Protein of unknown function (DUF1336) NA NA NA NA NA NA NA ENOG411DREC AGL6 P29386 AGL6_ARATH Agamous-like MADS-box protein AGL6 FUNCTION: Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. 28745 Agamous-like MADS-box protein AGL6 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; floral organ development [GO:0048437]; positive regulation of flower development [GO:0009911]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Preferentially expressed in flowers. locus:2043600; AT2G45650 Transcription factor MADS-box transcription factor 6 (OsMADS6) (Protein MOSAIC FLORAL ORGANS 1) Q6EU39 MADS6_ORYSJ MADS6 MFO1 Os02g0682200 LOC_Os02g45770 OJ1123_G04.6 OsJ_07942 DISRUPTION PHENOTYPE: Abnormal and almost sterile florets. Mosaic organs and disturbed identities of palea and lodicule. Extra carpels or spikelets. {ECO:0000269|PubMed:19820190}. FUNCTION: Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. ENOG411DREI CAN1,CAN2 F4IZC5,F4IH31 CAN1_ARATH,CAN2_ARATH Staphylococcal-like nuclease CAN1 (EC 3.1.31.-) (Calcium-dependent nuclease 1) (AtCAN1) (Ca(2+)-dependent nuclease 1),Staphylococcal-like nuclease CAN2 (EC 3.1.31.-) (Calcium-dependent nuclease 2) (AtCAN2) (Ca(2+)-dependent nuclease 2) FUNCTION: Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond. Possesses activity toward the single-stranded DNA, double-stranded DNA and RNA. May be involved in genomic DNA degradation during programmed cell death. {ECO:0000269|PubMed:10760589, ECO:0000269|PubMed:23102437}.,FUNCTION: Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond. Possesses activity toward the single-stranded DNA, double-stranded DNA and RNA. May be involved in genomic DNA degradation during programmed cell death. {ECO:0000269|PubMed:22450164, ECO:0000269|PubMed:23102437, ECO:0000269|PubMed:24076026}. 3.1.31.- 36134,37298 Staphylococcal-like nuclease CAN1 (EC 3.1.31.-) (Calcium-dependent nuclease 1) (AtCAN1) (Ca(2+)-dependent nuclease 1),Staphylococcal-like nuclease CAN2 (EC 3.1.31.-) (Calcium-dependent nuclease 2) (AtCAN2) (Ca(2+)-dependent nuclease 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; nucleic acid binding [GO:0003676]; RNA catabolic process [GO:0006401],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; endodeoxyribonuclease activity [GO:0004520]; endoribonuclease activity [GO:0004521]; metal ion binding [GO:0046872]; DNA catabolic process [GO:0006308]; RNA catabolic process [GO:0006401] TISSUE SPECIFICITY: Expressed in leaves, stems and siliques. {ECO:0000269|PubMed:24076026}. locus:2078486;,locus:2063058; AT3G56170,AT2G40410 nuclease Probable staphylococcal-like nuclease CAN4 (EC 3.1.31.-) (Calcium-dependent nuclease 4) (Ca(2+)-dependent nuclease 4),Probable staphylococcal-like nuclease CAN1 (EC 3.1.31.-) (Calcium-dependent nuclease 1) (Ca(2+)-dependent nuclease 1),Os12g0255200 protein (Fragment),Os01g0166300 protein Q2QUS0,Q942N7,A0A0P0Y8U0,A0A0P0UYP3 CAN4_ORYSJ,CAN1_ORYSJ,A0A0P0Y8U0_ORYSJ,A0A0P0UYP3_ORYSJ Os12g0255200 LOC_Os12g15314 OSJNBa0036A15,Os01g0166100 LOC_Os01g07200 OsJ_00507 P0701D05.20,Os12g0255200 OSNPB_120255200,Os01g0166300 OSNPB_010166300 FUNCTION: Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond. {ECO:0000250}. ENOG411DREK Q9LU28 Q9LU28_ARATH RNA methyltransferase family protein (RNA methyltransferase-like protein) Polycyclic aromatic hydrocarbon degradation (00624),Tyrosine metabolism (00350),Histidine metabolism (00340),Microbial metabolism in diverse environments (01120) 61732 RNA methyltransferase family protein (RNA methyltransferase-like protein) RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; response to cold [GO:0009409]; RNA processing [GO:0006396] locus:2094776; AT3G21300 RNA methyltransferase Os01g0193600 protein (Putative RNA methyltransferase) (cDNA clone:J013158G21, full insert sequence) Q9FEB7 Q9FEB7_ORYSJ Os01g0193600 Os01g0193600 OSNPB_010193600 P0001B06.4 P0671B11.35 ENOG411DREJ NPF8.3,NPF8.2,NPF8.1 P46032,Q9LFB8,Q9M390 PTR2_ARATH,PTR5_ARATH,PTR1_ARATH Protein NRT1/ PTR FAMILY 8.3 (AtNPF8.3) (Histidine-transporting protein) (Peptide transporter PTR2),Protein NRT1/ PTR FAMILY 8.2 (AtNPF8.2) (Peptide transporter PTR5),Protein NRT1/ PTR FAMILY 8.1 (AtNPF8.1) (Peptide transporter PTR1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18753286}.,DISRUPTION PHENOTYPE: Reduced growth and lower N content when cultivated on dipeptides. No effect on germination. {ECO:0000269|PubMed:18753286}. The ptr1-2 ptr5-2 double mutant grows normally on soil and on AM medium. Its pollen tubes germinate and elongate normally on germination media. The tubes can germinate normally in the presence of 100uM alanyl-ethionine (Ala-Eth) a toxic dipeptide but they elongate more than wild type pollen tubes. Root growth of ptr1-2 ptr5-1 mutants exceeds wild type root growth when Ala-Eth is present in the growth media. The dry weight of ptr1-2 ptr5-1 double mutants is lower than that of wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as the nitrogen source.,The ptr5-1 mutant grows normally on soil and on AM medium. Its pollen tubes germinate and elongate normally on germination media. The tubes can germinate normally in the presence of 100uM alanyl-ethionine (Ala-Eth) a toxic dipeptide but they elongate more than wild type pollen tubes. Their roots can also grow normally in the presence of Ala-Eth. ptr5-1 mutants have a similar nitrogen content to wild type plants. ptr5-1 mutants and wild type plants have a similar dry weight when both are grown with Pro-Ala or Ala-Ala dipeptides as the nitrogen source.,The ptr5-2 mutant grows normally on soil and on AM medium. Its pollen tubes germinate and elongate normally on germination media. The tubes can germinate normally in the presence of 100uM alanyl-ethionine (Ala-Eth) a toxic dipeptide but they elongate more than wild type pollen tubes. Their roots can also grow normally in the presence of Ala-Eth. ptr5-2 mutants have a similar nitrogen content to wild type plants. ptr5-2 mutants and wild type plants have a similar dry weight when both are grown with Pro-Ala or Ala-Ala dipeptides as the nitrogen source.,The ptr1-1 mutant grows normally on soil and on AM medium. Its pollen tubes germinate and elongate normally on germination media and in the presence of 100uM alanyl-ethionine (Ala-Eth) a toxic dipeptide. Root growth of ptr1-1 mutants exceeds wild type root growth when Ala-Eth is present in the growth media. The dry weight of ptr1-1 mutants is lower than that of wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as the nitrogen source.,The ptr1-2 mutant grows normally on soil and on AM medium. Its pollen tubes germinate and elongate normally on germination media. The tubes can germinate and elongate normally in the presence of 100uM alanyl-ethionine (Ala-Eth) a toxic dipeptide. Root growth of ptr1-2 mutants exceeds wild type root growth when Ala-Eth is present in the growth media. The dry weight of ptr1-2 mutants is lower than that of wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as the nitrogen source. FUNCTION: Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.,FUNCTION: Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. {ECO:0000269|PubMed:18753286}.,FUNCTION: Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. {ECO:0000269|PubMed:15500465, ECO:0000269|PubMed:18753286}. R-ATH-427975;R-ATH-6798695; 3.6.3.43; 64421,63308,64034 Protein NRT1/ PTR FAMILY 8.3 (AtNPF8.3) (Histidine-transporting protein) (Peptide transporter PTR2),Protein NRT1/ PTR FAMILY 8.2 (AtNPF8.2) (Peptide transporter PTR5),Protein NRT1/ PTR FAMILY 8.1 (AtNPF8.1) (Peptide transporter PTR1) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; dipeptide transporter activity [GO:0042936]; high-affinity oligopeptide transporter activity [GO:0015334]; peptide transporter activity [GO:0015197]; tripeptide transporter activity [GO:0042937]; dipeptide transport [GO:0042938]; peptide transport [GO:0015833]; protein transport [GO:0015031]; tripeptide transport [GO:0042939],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; dipeptide transporter activity [GO:0042936]; dipeptide transport [GO:0042938]; pollen tube growth [GO:0009860]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; dipeptide transporter activity [GO:0042936]; tripeptide transporter activity [GO:0042937]; dipeptide transport [GO:0042938]; nitrogen compound metabolic process [GO:0006807]; protein transport [GO:0015031]; tripeptide transport [GO:0042939] DEVELOPMENTAL STAGE: Expressed during early seed development. {ECO:0000269|PubMed:18753286}. TISSUE SPECIFICITY: Highly expressed in young leaves, roots and germinating seeds, intermediately in stems, flowers and mature leaves and at low level in siliques. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:8587981}.,TISSUE SPECIFICITY: Expressed in developing and germinating pollen grains and ovules. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:18753286}.,TISSUE SPECIFICITY: Expressed in cotyledons, hypocotyls, leaves, roots, flowers, pistils and vascular tissue of sepals, anthers, carpels and funiculi. Not detected in seeds. {ECO:0000269|PubMed:15500465, ECO:0000269|PubMed:17481610}. locus:2041125;,locus:2150124;,locus:2080235; AT2G02040,AT5G01180,AT3G54140 peptide transporter Os03g0719900 protein (Peptide transporter) (Peptide transporter PTR2, putative, expressed) (Putative peptide transporter 1) (cDNA clone:J013116K11, full insert sequence),Os01g0142800 protein (Putative peptide transport protein) (cDNA clone:001-019-H02, full insert sequence),Os03g0719900 protein,Os01g0142800 protein (Fragment) Q93VE2,Q9FU86,A0A0P0W2C2,A0A0P0UYD6 Q93VE2_ORYSJ,Q9FU86_ORYSJ,A0A0P0W2C2_ORYSJ,A0A0P0UYD6_ORYSJ OsPTR1 B1377B10.10 LOC_Os03g51050 Os03g0719900 OSNPB_030719900,P0019D06.17-1 P0024G09.5-1 Os01g0142800 OsJ_00327 OSNPB_010142800,Os03g0719900 OSNPB_030719900,Os01g0142800 OSNPB_010142800 ENOG411DREV ABCI19,ABCI21 Q3EDJ0,Q9XF19,A0A1P8AX17,A8MRG9,A0A1P8BGQ9,F4K8R9 AB19I_ARATH,AB21I_ARATH,A0A1P8AX17_ARATH,A8MRG9_ARATH,A0A1P8BGQ9_ARATH,F4K8R9_ARATH ABC transporter I family member 19 (ABC transporter ABCI.19) (AtABCI19) (GCN-related protein 2) (Non-intrinsic ABC protein 4),ABC transporter I family member 21 (ABC transporter ABCI.21) (AtABCI21) (GCN-related protein 1) (Non-intrinsic ABC protein 2),p-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein 32421,31360,25665,24948,17189,23828 ABC transporter I family member 19 (ABC transporter ABCI.19) (AtABCI19) (GCN-related protein 2) (Non-intrinsic ABC protein 4),ABC transporter I family member 21 (ABC transporter ABCI.21) (AtABCI21) (GCN-related protein 1) (Non-intrinsic ABC protein 2),p-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215]; response to far red light [GO:0010218]; response to red light [GO:0010114],ATP binding [GO:0005524]; ATPase activity [GO:0016887],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] TISSUE SPECIFICITY: Expressed in root elongating zone and root meristem, as well as in elongating etiolated hypocotyls. {ECO:0000269|Ref.1}. locus:505006098;,locus:2167644; AT1G03905,AT5G44110 transporter Os02g0810300 protein (Putative ATP-dependent transporter) (cDNA clone:001-026-E03, full insert sequence) Q6K989 Q6K989_ORYSJ Os02g0810300 Os02g0810300 OJ1116_E04.3 OsJ_08816 OSNPB_020810300 ENOG411DREY Q8GUN4,A0A1P8AQU0,A0A1P8AQW8,A0A1P8AQT7,A0A1P8AQS1 Q8GUN4_ARATH,A0A1P8AQU0_ARATH,A0A1P8AQW8_ARATH,A0A1P8AQT7_ARATH,A0A1P8AQS1_ARATH AT1G34770 protein (Melanoma-associated antigen G1-like protein) (Putative MAGE protein),Melanoma-associated antigen G1-like protein 26931,28357,21911,21209,20591 AT1G34770 protein (Melanoma-associated antigen G1-like protein) (Putative MAGE protein),Melanoma-associated antigen G1-like protein double-strand break repair [GO:0006302] locus:2008371; AT1G34770 MAGE family Os07g0151300 protein (Putative MAGE) (cDNA clone:J033082D03, full insert sequence) Q7XIY9 Q7XIY9_ORYSJ Os07g0151300 Os07g0151300 B1364A02.5 OJ1048_C10.6 OsJ_23113 OSNPB_070151300 ENOG411EF6N PMEI2 Q9LUV1 PMEI2_ARATH Pectinesterase inhibitor 2 (Pectin methylesterase inhibitor 2) (AtPMEI2) FUNCTION: Inhibits pectin methylesterase (PME) from flowers, siliques and pollen tube. {ECO:0000269|PubMed:14675772}. MISCELLANEOUS: The polarized accumulation at the pollen tube apex depends at least in part on local endocytosis at the flanks of the tip. 18367 Pectinesterase inhibitor 2 (Pectin methylesterase inhibitor 2) (AtPMEI2) apoplast [GO:0048046]; cell periphery [GO:0071944]; endomembrane system [GO:0012505]; pollen tube tip [GO:0090404]; pectinesterase inhibitor activity [GO:0046910]; pollen tube growth [GO:0009860] TISSUE SPECIFICITY: Highest expression in flowers (PubMed:14675772, PubMed:14741367, PubMed:17971035). Expressed exclusively at the pollen tube tip (PubMed:14675772, PubMed:17971035). {ECO:0000269|PubMed:14675772, ECO:0000269|PubMed:14741367, ECO:0000269|PubMed:17971035}. locus:2089010; AT3G17220 PMEI NA NA NA NA NA NA NA ENOG411E322 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chalcone-flavanone isomerase NA NA NA NA NA NA NA ENOG411E328 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC transcription factor NAC protein (Os01g0393100 protein) (Putative OsNAC2),NAM protein (Os01g0104500 protein) (Putative NAM protein) (cDNA, clone: J075186C19, full insert sequence) Q5VNK1,Q9FTY0 Q5VNK1_ORYSJ,Q9FTY0_ORYSJ Os01g0393100 B1109A06.36 OSNPB_010393100,Os01g0104500 Os01g0104500 OsJ_00037 OSNPB_010104500 P0436E04.23 ENOG411E32D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1685) NA NA NA NA NA NA NA ENOG411E32M Q9LZ97 Q9LZ97_ARATH SNARE-like superfamily protein (Uncharacterized protein At5g02280) (Uncharacterized protein T1E22_40) R-ATH-204005;R-ATH-8876198; 16011 SNARE-like superfamily protein (Uncharacterized protein At5g02280) (Uncharacterized protein T1E22_40) cytoplasm [GO:0005737]; TRAPP complex [GO:0030008]; Rab guanyl-nucleotide exchange factor activity [GO:0017112]; ER to Golgi vesicle-mediated transport [GO:0006888] locus:2180117; AT5G02280 Trafficking protein particle complex subunit Os07g0454700 protein (Synbindin-like protein) (cDNA clone:001-012-E11, full insert sequence),Os06g0151300 protein Q84NS9,B9FRI7 Q84NS9_ORYSJ,B9FRI7_ORYSJ Os07g0454700 OsJ_24117 OSJNBa0075N02.130 OSNPB_070454700,Os06g0151300 OsJ_20146 OSNPB_060151300 ENOG411E32J FKBP15-1,FKBP15-2 Q38935,Q38936 FK151_ARATH,FK152_ARATH Peptidyl-prolyl cis-trans isomerase FKBP15-1 (PPIase FKBP15-1) (EC 5.2.1.8) (15 kDa FK506-binding protein) (15 kDa FKBP) (FK506-binding protein 15-1) (AtFKBP15-1) (FK506-binding protein 2-1) (Immunophilin FKBP15-1) (Rotamase),Peptidyl-prolyl cis-trans isomerase FKBP15-2 (PPIase FKBP15-2) (EC 5.2.1.8) (15 kDa FK506-binding protein) (15 kDa FKBP) (FK506-binding protein 15-2) (AtFKBP15-2) (FK506-binding protein 2-2) (Immunophilin FKBP15-2) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 16355,17658 Peptidyl-prolyl cis-trans isomerase FKBP15-1 (PPIase FKBP15-1) (EC 5.2.1.8) (15 kDa FK506-binding protein) (15 kDa FKBP) (FK506-binding protein 15-1) (AtFKBP15-1) (FK506-binding protein 2-1) (Immunophilin FKBP15-1) (Rotamase),Peptidyl-prolyl cis-trans isomerase FKBP15-2 (PPIase FKBP15-2) (EC 5.2.1.8) (15 kDa FK506-binding protein) (15 kDa FKBP) (FK506-binding protein 15-2) (AtFKBP15-2) (FK506-binding protein 2-2) (Immunophilin FKBP15-2) (Rotamase) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; Golgi apparatus [GO:0005794]; vacuole [GO:0005773]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077] locus:2090235;,locus:2152506; AT3G25220,AT5G48580 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q5N801,A3C0C6 Q5N801_ORYSJ,A3C0C6_ORYSJ Os01g0915800 Os01g0915800 OsJ_04534 OSNPB_010915800 P0004D12.26,Os09g0501850 Os09g0501850 OsJ_29907 OSNPB_090501850 ENOG411EF1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Monoglyceride lipase NA NA NA NA NA NA NA ENOG411EKB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKBK Q9LR10 Q9LR10_ARATH C2H2-like zinc finger protein (F10A5.10) 49901 C2H2-like zinc finger protein (F10A5.10) nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2005684; AT1G75710 zinc finger Os04g0115500 protein Q0JFD1 Q0JFD1_ORYSJ Os04g0115500 Os04g0115500 OsJ_13566 OSNPB_040115500 ENOG411EKBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone deacetylase NA NA NA NA NA NA NA ENOG411EKBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8B4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pollen allergen Os06g0662300 protein (Putative group 3 pollen allergen) (cDNA clone:J023088G10, full insert sequence),Os06g0662225 protein Q654B1,A0A0P0WZN6 Q654B1_ORYSJ,A0A0P0WZN6_ORYSJ Os06g0662300 OsJ_22254 OSJNBb0065C04.15 OSNPB_060662300,Os06g0662225 OSNPB_060662225 ENOG411E8BC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8BB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dehydrin family protein, expressed (Os03g0655400 protein) (Putative dehydrin (Having alternative splicing products)) (WSI724 protein induced by water stress) (cDNA clone:001-023-B08, full insert sequence) Q40711 Q40711_ORYSJ Os03g0655400 LOC_Os03g45280 OsJ_11951 OSJNBb0023J24.5 OSNPB_030655400 ENOG411E8BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Smg-4/UPF3 family NA NA NA NA NA NA NA ENOG411E8BD Q9FKF5 Q9FKF5_ARATH At5g61660 (Glycine-rich protein) (Structural protein-like) 13085 At5g61660 (Glycine-rich protein) (Structural protein-like) locus:2151551; AT5G61660 NA NA NA NA NA NA NA NA ENOG411E8BF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4F5 protein family Os05g0407100 protein,Os01g0332700 protein (Fragment) Q0DI91,A0A0P0V2E5 Q0DI91_ORYSJ,A0A0P0V2E5_ORYSJ Os05g0407100 Os05g0407100 OSNPB_050407100,Os01g0332700 OSNPB_010332700 ENOG411E8BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain NA NA NA NA NA NA NA ENOG411E8BH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0162600 protein (cDNA, clone: J075149F15, full insert sequence) Q6H7S9 Q6H7S9_ORYSJ Os02g0162600 Os02g0162600 OJ9003_G05.36 OsJ_05487 OSNPB_020162600 ENOG411E8BK VQ18 O64868 VQ18_ARATH VQ motif-containing protein 18 (AtVQ18) FUNCTION: May function as positive regulator of plant growth. {ECO:0000305|PubMed:22535423}. MISCELLANEOUS: Plants over-expressing VQ18 show stunted growth phenotype. {ECO:0000269|PubMed:22535423}. 20899 VQ motif-containing protein 18 (AtVQ18) nucleus [GO:0005634] locus:2050538; AT2G44340 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411E8BJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0779400 protein,Os06g0199700 protein,Os02g0780000 protein Q6K7G3,Q69K54,A0A0N7KG72 Q6K7G3_ORYSJ,Q69K54_ORYSJ,A0A0N7KG72_ORYSJ OJ1293_A01.15 Os02g0779400 OSNPB_020779400,Os06g0199700 B1172G12.28 OJ1147_D11.6 OSNPB_060199700,Os02g0780000 OSNPB_020780000 ENOG411E8BR Q9SRD9,F4I423 Q9SRD9_ARATH,F4I423_ARATH Uncharacterized protein F28O16.11,Uncharacterized protein 169356,19979 Uncharacterized protein F28O16.11,Uncharacterized protein locus:2030121;,locus:2036251; AT1G76740,AT1G76840 NA NA NA NA NA NA NA NA ENOG411E8BU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0142200 protein Q75KL8 Q75KL8_ORYSJ Os05g0142200 Os05g0142200 OJ1264_A04.9 OsJ_17074 OSNPB_050142200 ENOG411E8BT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0161800 protein C7J798 C7J798_ORYSJ Os10g0161800 OSNPB_100161800 ENOG411E8BV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8BX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8BZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family 13 kDa prolamin C,Prolamin PPROL 14P,Prolamin PPROL 17D,Prolamin PPROL 14E (Prolamin PPROL 14) (Prolamin PPROL 4A) (Prolamin PPROL 7),Os05g0332000 protein (Prolamin) (Putative prolamin 7) (cDNA, clone: J075189K21, full insert sequence),Os05g0330600 protein (Prolamin) (Putative prolamin 7),Os06g0507200 protein (Prolamin) (Putative prolamin) (cDNA clone:002-133-C11, full insert sequence),Os06g0507001 protein (Os06g0507100 protein) (Fragment),Os05g0329400 protein (Os05g0329700 protein) (Prolamin),Os05g0328800 protein (Prolamin) (Putative prolamin 7),Os12g0269100 protein (Os12g0269101 protein) (Protease inhibitor/seed storage/LTP family protein, expressed) (cDNA, clone: J075160B15, full insert sequence),Os12g0269600 protein (Os12g0269700 protein) (Fragment),13 kDa prolamin (Os07g0206500 protein) (Prolamin),Os05g0331800 protein (cDNA, clone: J090012P20, full insert sequence),13 kDa prolamin (Os07g0220000 protein) (Os07g0220050 protein) (Prolamin) (cDNA, clone: J075156I22, full insert sequence),13 kDa prolamin (Os07g0219250 protein),Os05g0331532 protein (Os05g0331550 protein) (Prolamin) (cDNA, clone: J075154I15, full insert sequence),13 kDa prolamin (Os07g0219400 protein) (cDNA, clone: J075193O21, full insert sequence),Os05g0330150 protein,Os05g0331366 protein (Fragment),Os05g0329400 protein,Os05g0329200 protein (Fragment),Os12g0269600 protein (Fragment) P17048,Q42465,P20698,Q0DJ45,Q5W740,Q5W755,Q5Z9M9,C7J3Z0,Q0DJ44,Q5W6A3,Q2QUA9,C7J9I2,Q6ZIX4,Q0DJ38,Q8GVK5,Q8GVK9,A1YQF0,Q8GVK7,A0A0P0WKT6,A0A0P0WKV9,A0A0N7KKJ8,A0A0P0WKY1,A0A0P0Y8Y8 PRO25_ORYSJ,PRO20_ORYSJ,PRO28_ORYSJ,PRO7_ORYSJ,Q5W740_ORYSJ,Q5W755_ORYSJ,Q5Z9M9_ORYSJ,C7J3Z0_ORYSJ,Q0DJ44_ORYSJ,Q5W6A3_ORYSJ,Q2QUA9_ORYSJ,C7J9I2_ORYSJ,Q6ZIX4_ORYSJ,Q0DJ38_ORYSJ,Q8GVK5_ORYSJ,Q8GVK9_ORYSJ,A1YQF0_ORYSJ,Q8GVK7_ORYSJ,A0A0P0WKT6_ORYSJ,A0A0P0WKV9_ORYSJ,A0A0N7KKJ8_ORYSJ,A0A0P0WKY1_ORYSJ,A0A0P0Y8Y8_ORYSJ PROLM25 RP6 Os07g0206400 LOC_Os07g10570 OJ1119_B04.14,PROLM20 Os07g0219300 LOC_Os07g11910 B1130E10.109 OSJNBa0031C24.133,Os12g0269200 LOC_Os12g16890,PROLM7 Os05g0329100 LOC_Os05g26377 OSJNBa0051L16.16; PROLM8 Os05g0329300 LOC_Os05g26386 OSJNBa0051L16.17; PROLM9 Os05g0329350 LOC_Os05g26400 OSJNBa0051L16.18,Os05g0332000 OJ1005_D04.6 OJ1675_H07.13 OSNPB_050332000,Os05g0330600 Os05g0330600 OJ1675_H07.6 OSNPB_050330600,Os06g0507200 OSNPB_060507200 P0561B08.15,Os06g0507100 Os06g0507001 OSNPB_060507100,Os05g0329700 Os05g0329400 OSNPB_050329700,Os05g0328800 OSJNBa0051L16.13 OSNPB_050328800,Os12g0269100 LOC_Os12g16880 Os12g0269101 OSNPB_120269100,Os12g0269700 Os12g0269600 OSNPB_120269700,Os07g0206500 OJ1119_B04.16 OSNPB_070206500,Os05g0331800 Os05g0331800 OSNPB_050331800,B1130E10.114 Os07g0220000 Os07g0220050 OSJNBa0031C24.138 OSNPB_070220000,Os07g0219250 B1130E10.108 OSJNBa0031C24.132 OSNPB_070219250,Os05g0331532 Os05g0331550 OSNPB_050331532,B1130E10.110 Os07g0219400 OSJNBa0031C24.134 OSNPB_070219400,Os05g0330150 OSNPB_050330150,Os05g0331366 OSNPB_050331366,Os05g0329400 OSNPB_050329400,Os05g0329200 OSNPB_050329200,Os12g0269600 OSNPB_120269600 FUNCTION: Seed storage protein; serves as a source of nitrogen, carbon and sulfur for the young developing seedling.,FUNCTION: Seed storage protein; serves as a source of nitrogen, carbon and sulfur for the young developing seedling. {ECO:0000250}. MISCELLANEOUS: Lacks significant tandem repetitive sequences. ENOG411E52P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HVA22-like protein e HVA22-like protein Q2R3W9 Q2R3W9_ORYSJ LOC_Os11g30500 Os11g0498600 OSNPB_110498600 ENOG411E52X T16L24.190 Q9M1A4,Q8VYY8 Q9M1A4_ARATH,Q8VYY8_ARATH Glycine-rich protein (Uncharacterized protein At3g59640) (Uncharacterized protein T16L24.190),Nucleusenvelope protein (Uncharacterized protein At2g43630) 27138,30700 Glycine-rich protein (Uncharacterized protein At3g59640) (Uncharacterized protein T16L24.190),Nucleusenvelope protein (Uncharacterized protein At2g43630) integral component of membrane [GO:0016021],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; nucleus [GO:0005634]; plastid [GO:0009536]; viral envelope [GO:0019031] locus:2097523;,locus:2044039; AT3G59640,AT2G43630 glycine-rich protein NA NA NA NA NA NA NA ENOG411E16H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF862 Expressed protein (Os10g0472400 protein) (cDNA clone:J033106J23, full insert sequence) Q337L1 Q337L1_ORYSJ Os10g0472400 LOC_Os10g33350 OSNPB_100472400 ENOG411E16A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411E16B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA START Homeobox-leucine zipper protein ROC5 (GLABRA 2-like homeobox protein 5) (HD-ZIP protein ROC5) (Homeodomain transcription factor ROC5) (Protein RICE OUTERMOST CELL-SPECIFIC 5),Homeobox-leucine zipper protein ROC4 (GLABRA 2-like homeobox protein 4) (HD-ZIP protein ROC4) (Homeodomain transcription factor ROC4) (Protein RICE OUTERMOST CELL-SPECIFIC 4) Q6EPF0,Q7Y0V9 ROC5_ORYSJ,ROC4_ORYSJ ROC5 GL2-5 Os02g0674800 LOC_Os02g45250 OsJ_07908 P0657H12.28,ROC4 GL2-4 Os04g0569100 LOC_Os04g48070 OSJNBb0032E06.7 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E16Y A0A1I9LTJ0,F4J6V5 A0A1I9LTJ0_ARATH,F4J6V5_ARATH Transcription initiation factor IIF, beta subunit R-ATH-113418;R-ATH-674695;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 23149,31395 Transcription initiation factor IIF, beta subunit transcription factor TFIIF complex [GO:0005674]; catalytic activity [GO:0003824]; translation initiation factor activity [GO:0003743]; transcription initiation from RNA polymerase II promoter [GO:0006367],transcription factor TFIIF complex [GO:0005674]; catalytic activity [GO:0003824]; transcription factor activity, core RNA polymerase II binding [GO:0000991]; translation initiation factor activity [GO:0003743]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; positive regulation of transcription initiation from RNA polymerase II promoter [GO:0060261]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2100554; AT3G52270 transcription initiation factor IIF NA NA NA NA NA NA NA ENOG411E16P AGL8 A8MRX9 A8MRX9_ARATH AGAMOUS-like 8 Double mutant displayed extremely small valves and very large rough and distorted repla indicating a strong enhancement of the phenotypes of the two single mutants both in valves and replum.,The ectopic formation of secondary walls normally seen in the ful mutant is suppressed in the double mutant. Short siliques that are crowded with small seeds; Reduced fertility-R. Martienssen-1998 20511 AGAMOUS-like 8 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700] AT5G60910 transcription factor MADS-box transcription factor 18 (FDRMADS7) (MADS-box protein 2) (MADS-box protein 28) (OsMADS18) (OsMADS2) (OsMADS28) Q0D4T4 MAD18_ORYSJ MADS18 MADS2 MADS28 Os07g0605200 LOC_Os07g41370 OsJ_25046 OSJNBb0040H10.26 FUNCTION: Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. MISCELLANEOUS: Plants overexpressing MADS18 remain very small in size and flower at 105 days after germination compared to wild-type plants which flower at 140 days after germination. ENOG411E16T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitinase class I Os05g0138200 protein (Putative chitinase) (cDNA clone:J033040N15, full insert sequence) Q6AT95 Q6AT95_ORYSJ Os05g0138200 OsJ_17046 OSJNBa0069I13.4 OSNPB_050138200 ENOG411DYZG Q8RXD7,F4KAG0 Q8RXD7_ARATH,F4KAG0_ARATH Alpha-taxilin-like protein (At5g50840) (Uncharacterized protein At5g50840),Alpha-taxilin-like protein R-ATH-449836; 46796,46924 Alpha-taxilin-like protein (At5g50840) (Uncharacterized protein At5g50840),Alpha-taxilin-like protein syntaxin binding [GO:0019905] locus:2157946; AT5G50840 Myosin-like coiled-coil protein Alpha-taxilin, putative, expressed (Muscle derived-like protein) (Os03g0288600 protein) (cDNA clone:J033048A15, full insert sequence),Os03g0288600 protein (Fragment) Q84VE3,A0A0P0VWB4 Q84VE3_ORYSJ,A0A0P0VWB4_ORYSJ Os03g0288600 LOC_Os03g17930 Os03g0288600 OSNPB_030288600,Os03g0288600 OSNPB_030288600 ENOG411E3X4 A0A1P8B0A7,Q8LE51,F4IGY8 A0A1P8B0A7_ARATH,Q8LE51_ARATH,F4IGY8_ARATH Protein yippee-like R-ATH-6798695; 10307,14547,12759 Protein yippee-like metal ion binding [GO:0046872] locus:2047736; AT2G40110 Yippee-like Protein yippee-like,Os03g0698500 protein Q851S2,A0A0P0W1R3 Q851S2_ORYSJ,A0A0P0W1R3_ORYSJ LOC_Os03g49150 Os03g0698500 OsJ_12219 OSJNBb0017F17.21 OSNPB_030698500,Os03g0698500 OSNPB_030698500 ENOG411E3X5 PSBY O49347 PSBY_ARATH Photosystem II core complex proteins psbY, chloroplastic (L-arginine-metabolizing enzyme) (L-AME) [Cleaved into: Photosystem II protein psbY-1, chloroplastic (psbY-A1); Photosystem II protein psbY-2, chloroplastic (psbY-A2)] FUNCTION: PSBY-1 and -2 are manganese-binding polypeptides with L-arginine metabolizing enzyme activity. They are a component of the core of photosystem II. MISCELLANEOUS: The central hydrophobic segment does not form a membrane-spanning region but could serve as a targeting signal for processing of the precursor in the thylakoid membrane. MetaCyc:AT1G67740-MONOMER; 19465 Photosystem II core complex proteins psbY, chloroplastic (L-arginine-metabolizing enzyme) (L-AME) [Cleaved into: Photosystem II protein psbY-1, chloroplastic (psbY-A1); Photosystem II protein psbY-2, chloroplastic (psbY-A2)] chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; manganese ion binding [GO:0030145]; cell redox homeostasis [GO:0045454]; photoinhibition [GO:0010205]; photosynthesis [GO:0015979] locus:2008555; AT1G67740 photosystem II core complex proteins psbY Os08g0119800 protein (Putative photosystem II core complex proteins psbY, chloroplast (L-arginine metabolising enzyme) (L-AME)) (cDNA clone:001-024-H10, full insert sequence) (cDNA clone:J013109P06, full insert sequence) (cDNA clone:J013136L01, full insert sequence) Q6ZJ41 Q6ZJ41_ORYSJ Os08g0119800 OJ1005_B05.27 OSNPB_080119800 ENOG411E3X7 A0A1P8BFS0 A0A1P8BFS0_ARATH Transmembrane protein 21108 Transmembrane protein integral component of membrane [GO:0016021] Embryo-specific protein 3 (ATS3) Os05g0171200 protein (cDNA clone:001-106-B03, full insert sequence) Q65XR8 Q65XR8_ORYSJ Os05g0171200 Os05g0171200 OSNPB_050171200 P0685E10.11 ENOG411E3X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA20 (Indoleacetic acid-induced protein 20) Q5VRR0 IAA20_ORYSJ IAA20 Os06g0166500 LOC_Os06g07040 OsJ_20255 OSJNBa0015I14.39 P0680A03.13 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E3X2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh Probable calcium-binding protein CML9 (Calmodulin-like protein 9) Q6F334 CML9_ORYSJ CML9 Os05g0491000 LOC_Os05g41200 OsJ_018254 OsJ_19024 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E3X8 XERICO Q9SI09 XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO (EC 2.3.2.27) (RING-type E3 ubiquitin transferase XERICO) DISRUPTION PHENOTYPE: Contains lower amounts of endogenous abscisic acid and is more resistant to abscisic acid treatment during seedling establishment. {ECO:0000269|PubMed:17933900}. Resistant to exogenous ABA. Seeds contained lower amounts of endogenous ABA than wildtype. FUNCTION: Function on abscisic acid homeostasis at post-translational level, probably through ubiquitin/proteasome-dependent substrate-specific degradation. {ECO:0000269|PubMed:16792696, ECO:0000269|PubMed:17933900}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 17928 Probable E3 ubiquitin-protein ligase XERICO (EC 2.3.2.27) (RING-type E3 ubiquitin transferase XERICO) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; abscisic acid biosynthetic process [GO:0009688]; abscisic acid metabolic process [GO:0009687]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to chitin [GO:0010200]; response to gibberellin [GO:0009739]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Ubiquitous. Higher expression in actively growing tissues. {ECO:0000269|PubMed:16792696}. locus:2059793; AT2G04240 zinc finger C3HC4 type domain containing protein expressed Os08g0492500 protein (Zinc finger protein family-like) (cDNA clone:J013002P08, full insert sequence),Os09g0478600 protein (Fragment) Q6Z8T9,Q0J0X8 Q6Z8T9_ORYSJ,Q0J0X8_ORYSJ Os08g0492500 OSNPB_080492500 P0686H11.17,Os09g0478600 OSNPB_090478600 ENOG411E3XD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E3XF FKBP12 Q8LGG0 FKB12_ARATH Peptidyl-prolyl cis-trans isomerase FKBP12 (PPIase FKBP12) (EC 5.2.1.8) (12 kDa FK506-binding protein) (12 kDa FKBP) (FK506-binding protein 12) (AtFKBP12) (FKBP-12) (Immunophilin FKBP12) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Mediates rapamycin inactivation of TOR protein kinase activity. {ECO:0000250, ECO:0000269|PubMed:22134914}. 5.2.1.8 11988 Peptidyl-prolyl cis-trans isomerase FKBP12 (PPIase FKBP12) (EC 5.2.1.8) (12 kDa FK506-binding protein) (12 kDa FKBP) (FK506-binding protein 12) (AtFKBP12) (FKBP-12) (Immunophilin FKBP12) (Rotamase) cytosol [GO:0005829]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077] locus:2173438; AT5G64350 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q6K8D4 Q6K8D4_ORYSJ Os02g0760300 Os02g0760300 OJ1175_B01.15 OsJ_08466 OSNPB_020760300 ENOG411E3XM Q9SKC9 NDUB7_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT2G02050-MONOMER;MetaCyc:AT2G02050-MONOMER; 11740 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 mitochondrial intermembrane space [GO:0005758]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; photorespiration [GO:0009853] locus:2041135; AT2G02050 NADH dehydrogenase (ubiquinone) 1 beta subcomplex Os03g0129900 protein (Fragment) Q0DVH3 Q0DVH3_ORYSJ Os03g0129900 OSNPB_030129900 ENOG411E3XN RPL21M Q8L9A0 RM21_ARATH 50S ribosomal protein L21, mitochondrial (Protein NUCLEAR FUSION DEFECTIVE 1) DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis and abnormal double fertilization; fails to undergo fusion of the outer nuclear membranes. {ECO:0000269|PubMed:16698901}. Male and female gametophyte defective; Embryo defective (inferred)-G. Drews-2006 FUNCTION: This protein binds to 23S ribosomal RNA in the presence of protein L20 (By similarity). Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus, and during double fertilization of the egg cell and the central cell (PubMed:16698901). {ECO:0000250, ECO:0000269|PubMed:16698901}. 30908 50S ribosomal protein L21, mitochondrial (Protein NUCLEAR FUSION DEFECTIVE 1) mitochondrion [GO:0005739]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; sequence-specific DNA binding [GO:0043565]; structural constituent of ribosome [GO:0003735]; double fertilization forming a zygote and endosperm [GO:0009567]; embryo sac development [GO:0009553]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197]; pollen development [GO:0009555]; single fertilization [GO:0007338]; translation [GO:0006412] TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers, pistils and siliques. {ECO:0000269|PubMed:11675010, ECO:0000269|PubMed:16698901}. locus:2126699; AT4G30930 50S ribosomal protein L21 Os05g0557800 protein (Putative 50S ribosomal protein L21) (Putative ribosomal protein L21) (cDNA clone:J013153H24, full insert sequence),Os05g0557800 protein (Fragment) Q6I600,A0A0P0WQN4 Q6I600_ORYSJ,A0A0P0WQN4_ORYSJ Os05g0557800 OJ1214_E03.19 OsJ_19509 OSJNBa0001A14.1 OSNPB_050557800,Os05g0557800 OSNPB_050557800 ENOG411E3XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os07g0624200 protein A0A0P0X8X5 A0A0P0X8X5_ORYSJ Os07g0624200 OSNPB_070624200 ENOG411E3XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphotransfer protein NA NA NA NA NA NA NA ENOG411E3XJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0682300 protein Q6EU38 Q6EU38_ORYSJ Os02g0682300 Os02g0682300 OJ1123_G04.7 OsJ_07943 OSNPB_020682300 ENOG411E3XK Q9FNE8 CSPLV_ARATH CASP-like protein 4A1 (AtCASPL4A1) 30299 CASP-like protein 4A1 (AtCASPL4A1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:2170603; AT5G40300 CASP-like protein NA NA NA NA NA NA NA ENOG411E3XT F4JKW8 F4JKW8_ARATH ABC subfamily C protein 51274 ABC subfamily C protein integral component of membrane [GO:0016021] locus:2130799; AT4G15820 NA NA NA NA NA NA NA NA ENOG411E3XU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome b5-like Heme/Steroid binding domain Membrane steroid-binding protein 2 (OsMSBP2) (OsMSBP1) Q9FVZ9 MSBP2_ORYSJ MSBP2 Os10g0502500 LOC_Os10g35850 OsJ_32070 OSJNBb0073N24.2 FUNCTION: Binds multiple steroid compounds. {ECO:0000250|UniProtKB:Q9XFM6}. ENOG411E3XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3XW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E3XP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family Hsp20/alpha crystallin family protein, expressed (Os10g0159700 protein) (cDNA clone:002-124-F03, full insert sequence) Q7G754 Q7G754_ORYSJ LOC_Os10g07210 Os10g0159700 OsJ_30787 OSJNAa0036D19.14 OSJNBa0050E08.7 OSNPB_100159700 ENOG411E3XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0125200 protein (cDNA, clone: J065062L18, full insert sequence),Os11g0128600 protein,Os06g0194200 protein,Os01g0620900 protein Q2QYB9,Q2RB25,B9FRY9,A0A0N7KDC2 Q2QYB9_ORYSJ,Q2RB25_ORYSJ,B9FRY9_ORYSJ,A0A0N7KDC2_ORYSJ LOC_Os12g03170 Os12g0125200 OSNPB_120125200,LOC_Os11g03450 Os11g0128600 OSNPB_110128600,Os06g0194200 OsJ_20434 OSNPB_060194200,Os01g0620900 OSNPB_010620900 ENOG411E3XS Q8LCN1 Q8LCN1_ARATH 50S ribosomal protein L20 FUNCTION: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. {ECO:0000256|RuleBase:RU004311}. 14722 50S ribosomal protein L20 ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:2015661; AT1G16740 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity) 50S ribosomal protein L20 Q942D0,Q65XC7 Q942D0_ORYSJ,Q65XC7_ORYSJ Os01g0734100 Os01g0734100 B1060H01.12 OsJ_03363 OSJNBb0036G09.23 OSNPB_010734100,Os05g0528200 Os05g0528200 OJ1187_E11.12 OSNPB_050528200 FUNCTION: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. {ECO:0000256|RuleBase:RU004311}. ENOG411E3XX NUDT12,NUDT13 Q93ZY7,Q52K88 NUD12_ARATH,NUD13_ARATH Nudix hydrolase 12, mitochondrial (AtNUDT12) (EC 3.6.1.-),Nudix hydrolase 13, mitochondrial (AtNUDT13) (EC 3.6.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}.,FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(6) hexaphosphate (Ap(6)A), diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) and adenosine tetraphosphate (p(4)A) as substrates, but not diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A), diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A), deoxyribonucleoside triphosphates, ribonucleoside triphosphates, diphosphoinositol pentakisphosphate (PP-InsP(5)) and 5-phospho-alpha-D-ribosyl diphosphate (PRPP). {ECO:0000269|PubMed:17824959}. ARA:AT1G12880-MONOMER;,ARA:AT3G26690-MONOMER; 3.6.1.B13; 3.6.1.- 23869,23187 Nudix hydrolase 12, mitochondrial (AtNUDT12) (EC 3.6.1.-),Nudix hydrolase 13, mitochondrial (AtNUDT13) (EC 3.6.1.-) cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; metal ion binding [GO:0046872],mitochondrion [GO:0005739]; nucleus [GO:0005634]; bis(5'-adenosyl)-pentaphosphatase activity [GO:0034432]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2010331;,locus:2090842; AT1G12880,AT3G26690 Nudix hydrolase Nudix hydrolase 13, mitochondrial, putative, expressed (Os11g0531700 protein) (cDNA clone:J023124F03, full insert sequence),MutT-like protein (Os02g0520100 protein) (cDNA clone:J023132J05, full insert sequence),Nudix hydrolase 13, mitochondrial, putative, expressed (Os11g0531700 protein) (cDNA clone:006-203-B03, full insert sequence) B7ENP9,Q6H4N6,Q2R391 B7ENP9_ORYSJ,Q6H4N6_ORYSJ,Q2R391_ORYSJ Os11g0531700 LOC_Os11g32750 OSNPB_110531700,Os02g0520100 Os02g0520100 OsJ_06936 OSJNBb0003H22.2 OSNPB_020520100,Os11g0531700 LOC_Os11g32750 Os11g0531700 OsJ_34114 OSNPB_110531700 ENOG411E3XY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0497 membrane protein CASP-like protein 2C2 (OsCASPL2C2) Q6ETN2 CSPLM_ORYSJ Os02g0177700 LOC_Os02g08110 P0504A05.25 ENOG411E3XZ MPC3,MPC2,MPC4,NRGA1 Q8LD38,Q8L7H8,O49636,A0A1P8B966,A8MQ95 MPC3_ARATH,MPC2_ARATH,MPC4_ARATH,A0A1P8B966_ARATH,A8MQ95_ARATH Mitochondrial pyruvate carrier 3 (Protein NEGATIVE REGULATOR OF GUARD CELL ABA SIGNALING 1),Mitochondrial pyruvate carrier 2,Mitochondrial pyruvate carrier 4,Mitochondrial pyruvate carrier DISRUPTION PHENOTYPE: Abscisic acid (ABA) hypersensitivity of stomatal movements and enhanced drought tolerance. {ECO:0000269|PubMed:24842572}. Under FRc conditions the length mutant hypocotyls is decreased compared to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is similar to that of wild type. FUNCTION: Mediates the uptake of pyruvate into mitochondria. Negatively regulates ABA-induced guard cell signaling and mediates drought stress responses. {ECO:0000269|PubMed:24842572}.,FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000250|UniProtKB:Q8LD38}.,FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000256|RuleBase:RU363100}. 12181,12222,12005,9061,10167 Mitochondrial pyruvate carrier 3 (Protein NEGATIVE REGULATOR OF GUARD CELL ABA SIGNALING 1),Mitochondrial pyruvate carrier 2,Mitochondrial pyruvate carrier 4,Mitochondrial pyruvate carrier integral component of mitochondrial inner membrane [GO:0031305]; mitochondrion [GO:0005739]; pyruvate transmembrane transporter activity [GO:0050833]; mitochondrial pyruvate transmembrane transport [GO:1902361]; mitochondrial pyruvate transport [GO:0006850]; negative regulation of anion channel activity [GO:0010360]; negative regulation of potassium ion transmembrane transporter activity [GO:1901017]; regulation of response to water deprivation [GO:2000070],integral component of mitochondrial inner membrane [GO:0031305]; mitochondrion [GO:0005739]; pyruvate transmembrane transporter activity [GO:0050833]; mitochondrial pyruvate transmembrane transport [GO:1902361],mitochondrial inner membrane [GO:0005743]; mitochondrial pyruvate transport [GO:0006850] TISSUE SPECIFICITY: Abundant in leaf and particularly in the guard cells. {ECO:0000269|PubMed:24842572}. locus:2126583;,locus:505006463;,locus:2132095; AT4G05590,AT4G14695,AT4G22310 Brain protein Mitochondrial pyruvate carrier Q7XIT4 Q7XIT4_ORYSJ OJ1047_A06.120 Os07g0449100 OsJ_24091 OSNPB_070449100 FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000256|RuleBase:RU363100}. ENOG411EFZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0831950 protein,Os12g0105150 protein (Fragment),Os01g0831250 protein (Fragment),Os03g0838450 protein (Fragment),Os01g0870350 protein (Fragment) A0A0P0VA14,A0A0P0Y605,A0A0P0V9V5,A0A0P0W577,A0A0P0VAV1 A0A0P0VA14_ORYSJ,A0A0P0Y605_ORYSJ,A0A0P0V9V5_ORYSJ,A0A0P0W577_ORYSJ,A0A0P0VAV1_ORYSJ Os01g0831950 OSNPB_010831950,Os12g0105150 OSNPB_120105150,Os01g0831250 OSNPB_010831250,Os03g0838450 OSNPB_030838450,Os01g0870350 OSNPB_010870350 ENOG411EFBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os06g0148900 protein (cDNA clone:002-129-H10, full insert sequence),Os06g0148500 protein,Os04g0514700 protein Q5VPK0,Q0DEJ9,A0A0P0WCI3 Q5VPK0_ORYSJ,Q0DEJ9_ORYSJ,A0A0P0WCI3_ORYSJ Os06g0148900 Os06g0148900 OSNPB_060148900 P0624B04.13,Os06g0148500 Os06g0148500 OsJ_20128 OSNPB_060148500,Os04g0514700 OSNPB_040514700 ENOG411DZTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mate efflux family protein NA NA NA NA NA NA NA ENOG411DZTS AP1 P35631,A0A1P8AMJ8,A0A1P8AML8 AP1_ARATH,A0A1P8AMJ8_ARATH,A0A1P8AML8_ARATH Floral homeotic protein APETALA 1 (Agamous-like MADS-box protein AGL7),K-box region and MADS-box transcription factor family protein DISRUPTION PHENOTYPE: Partial conversion of flowers into shoots and a disruption of sepal and petal development. {ECO:0000269|PubMed:17428825}. Flower meristems behave like inflorescence meristems and continuously elaborate new meristems resulting in the cauliflower phenotype. Eventually flowers resembling those of ap1 single mutants eventually appear and set seeds.,Inflorescences take 7-10 days longer than ap1 cal mutant to begin producing flowers.,Meristem defect intermediate between that of ap1 and ap1 cal mutants. Inflorescences appear caulifower-like early after bolting but soon start producing ap1-like flowers on their periphery.,Unlike the agl24-2 svp-41 double mutant where severe phenotypes similar to the lug mutant were only observed when plants were grown at 30°C in the ap1-12 agl24-2 svp-41 triple mutant severe lug-type phenotypes were observed under normal growing conditions (22°C).,Development of flowers in the axils of first-whorl organs. Homeotic floral transformations-M. Yanofsky-1992 FUNCTION: Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Is indispensable for normal development of sepals and petals in flowers. Regulates positively the B class homeotic proteins APETALA3 and PISTILLATA with the cooperation of LEAFY and UFO. Interacts with SEPALLATA3 or AP3/PI heterodimer to form complexes that could be involved in genes regulation during floral meristem development. Regulates positively AGAMOUS in cooperation with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Together with AGL24 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Represses flowering time genes AGL24, SVP and SOC1 in emerging floral meristems. {ECO:0000269|PubMed:11283333, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:17794879, ECO:0000269|PubMed:19656343, ECO:0000269|Ref.8}. 30182,27816,23137 Floral homeotic protein APETALA 1 (Agamous-like MADS-box protein AGL7),K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; floral meristem determinacy [GO:0010582]; flower development [GO:0009908]; meristem structural organization [GO:0009933]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700] DEVELOPMENTAL STAGE: Expressed at an early stage of floral initiation. TISSUE SPECIFICITY: Expressed in young flower primordia, later becomes localized to sepals and petals. locus:2033273; AT1G69120 Transcription factor NA NA NA NA NA NA NA ENOG411DZTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DZTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PH domain NA NA NA NA NA NA NA ENOG411DZTE CPUORF47,F4P12_100 Q9LYW6,Q9LFH7,A8MQH8 Q9LYW6_ARATH,Q9LFH7_ARATH,A8MQH8_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (Peptide upstream protein) (Uncharacterized protein At5g03190) (Uncharacterized protein F15A17_220),Peptide upstream protein (Uncharacterized protein F4P12_100),Peptide upstream protein 50909,52264,53574 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (Peptide upstream protein) (Uncharacterized protein At5g03190) (Uncharacterized protein F15A17_220),Peptide upstream protein (Uncharacterized protein F4P12_100),Peptide upstream protein methyltransferase activity [GO:0008168],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2084021;,locus:2143478; AT5G03190,AT3G53400 NA NA NA NA NA NA NA NA ENOG411EHWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nitrogen assimilation regulatory protein NA NA NA NA NA NA NA ENOG411DZTA PCMP-H84 Q9SR82 PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 77326 Putative pentatricopeptide repeat-containing protein At3g08820 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2077878; AT3G08820 Pentatricopeptide repeat-containing protein Os11g0109600 protein (Vegetative storage protein, putative),Os12g0109300 protein (Fragment),Os12g0109633 protein H2KWB6,A0A0P0Y650,A0A0P0Y616 H2KWB6_ORYSJ,A0A0P0Y650_ORYSJ,A0A0P0Y616_ORYSJ Os11g0109600 LOC_Os11g01836 OSNPB_110109600,Os12g0109300 OSNPB_120109300,Os12g0109633 OSNPB_120109633 ENOG411EHWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0235250 protein (Fragment) A0A0P0Y0L4 A0A0P0Y0L4_ORYSJ Os11g0235250 OSNPB_110235250 ENOG411DZT9 STR2,STR1,RDH2,MST1 Q24JL3,O64530,A0A1P8AU81,A0A1P8AU99,A8MR47 STR2_ARATH,STR1_ARATH,A0A1P8AU81_ARATH,A0A1P8AU99_ARATH,A8MR47_ARATH Thiosulfate/3-mercaptopyruvate sulfurtransferase 2 (EC 2.8.1.1) (EC 2.8.1.2) (Rhodanese homolog protein 2) (AtRDH2) (Sulfurtransferase 2) (AtStr2),Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial (EC 2.8.1.1) (EC 2.8.1.2) (AtMST1) (Rhodanese homolog protein 1) (AtRDH1) (Sulfurtransferase 1) (AtStr1),Rhodanese homologue 2,Sulfurtransferase DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21189252}.,DISRUPTION PHENOTYPE: Shrunken seeds with unmature embryos. {ECO:0000269|PubMed:21189252}. Embryo defective; Cotyledon-Zhang-2010 FUNCTION: Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is 3-mercaptopyruvate > thiosulfate. Involved in embryo and seed development. {ECO:0000269|PubMed:10951223, ECO:0000269|PubMed:21189252}.,FUNCTION: Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is 3-mercaptopyruvate > thiosulfate. Involved in embryo and seed development. {ECO:0000269|PubMed:10601861, ECO:0000269|PubMed:10951223, ECO:0000269|PubMed:12437129, ECO:0000269|PubMed:12482606, ECO:0000269|PubMed:21189252}. ARA:AT1G16460-MONOMER;,ARA:AT1G79230-MONOMER; 2.8.1.1; 2.8.1.2 37412,41893,32146,29451,31711 Thiosulfate/3-mercaptopyruvate sulfurtransferase 2 (EC 2.8.1.1) (EC 2.8.1.2) (Rhodanese homolog protein 2) (AtRDH2) (Sulfurtransferase 2) (AtStr2),Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial (EC 2.8.1.1) (EC 2.8.1.2) (AtMST1) (Rhodanese homolog protein 1) (AtRDH1) (Sulfurtransferase 1) (AtStr1),Rhodanese homologue 2,Sulfurtransferase cytoplasm [GO:0005737]; cytosol [GO:0005829]; 3-mercaptopyruvate sulfurtransferase activity [GO:0016784]; thiosulfate sulfurtransferase activity [GO:0004792]; embryo development ending in seed dormancy [GO:0009793],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; 3-mercaptopyruvate sulfurtransferase activity [GO:0016784]; sulfurtransferase activity [GO:0016783]; thiosulfate sulfurtransferase activity [GO:0004792]; embryo development ending in seed dormancy [GO:0009793],thiosulfate sulfurtransferase activity [GO:0004792] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:10951223}.,TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:10951223, ECO:0000269|PubMed:21189252}. locus:2032800;,locus:2207345; AT1G16460,AT1G79230 sulfurtransferase Os02g0167100 protein (Putative thiosulfate transferase),Sulfurtransferase,Sulfurtransferase (Fragment) Q6H4W2,Q0IM09,A0A0P0YCJ3 Q6H4W2_ORYSJ,Q0IM09_ORYSJ,A0A0P0YCJ3_ORYSJ OSJNBa0085K21.31 Os02g0167100 OSNPB_020167100,Os12g0608600 Os12g0608600 OSNPB_120608600,Os12g0608600 OSNPB_120608600 ENOG411DZT6 Q9CAG8 FBK28_ARATH F-box/kelch-repeat protein At1g67480 41235 F-box/kelch-repeat protein At1g67480 Cul3-RING ubiquitin ligase complex [GO:0031463]; protein ubiquitination [GO:0016567] locus:2008773; AT1G67480 F-box kelch-repeat protein Kelch repeat-containing F-box protein-like (Os02g0504900 protein),Os02g0504900 protein Q6K649,A3A772 Q6K649_ORYSJ,A3A772_ORYSJ Os02g0504900 Os02g0504900 OJ1003_F04.33 OSNPB_020504900,Os02g0504900 OsJ_06846 OSNPB_020504900 ENOG411DZT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Os01g0369500 protein (Fragment) A0A0P0V338 A0A0P0V338_ORYSJ Os01g0369500 OSNPB_010369500 ENOG411DZT5 SKIP24 Q9CAZ0 SKI24_ARATH F-box protein SKIP24 (SKP1-interacting partner 24) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 34341 F-box protein SKIP24 (SKP1-interacting partner 24) protein ubiquitination [GO:0016567] locus:2025665; AT1G08710 F-Box protein NA NA NA NA NA NA NA ENOG411EAY5 MKK1,MEK1 Q94A06,A0A1P8B3X1,A0A1P8B3Y6 M2K1_ARATH,A0A1P8B3X1_ARATH,A0A1P8B3Y6_ARATH Mitogen-activated protein kinase kinase 1 (AtMKK1) (MAP kinase kinase 1) (EC 2.7.12.2) (AtMEK1) (NMAPKK),MAP kinase/ ERK kinase 1 DISRUPTION PHENOTYPE: No obvious developmental defects under normal growth conditions. Compromised in resistance to both virulent and avirulent Pseudomonas syringae strains. Reduced sensitivity to abscisic acid (ABA) during germination and reduced drought tolerance of seedlings. Simultaneous knockdown of MKK1 and MKK2 results in dwarf and small plants exhibiting a seedling-lethality phenotype. {ECO:0000269|PubMed:17059410, ECO:0000269|PubMed:18248592, ECO:0000269|PubMed:18599650, ECO:0000269|PubMed:18982020}. Enhanced susceptibility to Pseudomonas syringae pv. tomato.,Phenotype resembles MPK4 mutant.Leaves are dark green and curled.Constitutively overproduces SA and exhibits enhanced resistance to biotrophic pathogens. Insensitive to jasmonic acid.Enhanced basal expression of PR1 other SA dependent genes. Susceptible to virulent and avirulent Pseudomonas syringae-L. Bogre-2006 FUNCTION: MEKK1, MKK1/MKK2 and MPK4/MPK6 function in a signaling pathway that modulates the expression of genes responding to biotic and abiotic stresses and also plays an important role in pathogen defense by negatively regulating innate immunity. Activates by phosphorylation the downstream MPK4. Acts redundantly with MKK2. MKK1-MPK6 module mediates abscisic acid (ABA)-dependent CAT1 expression with H(2)O(2) production and response to drought and salt stress. MKK1-MPK6 module is also involved in sugar signaling during the process of seed germination. {ECO:0000269|PubMed:10759527, ECO:0000269|PubMed:17059410, ECO:0000269|PubMed:17728292, ECO:0000269|PubMed:18248592, ECO:0000269|PubMed:18599650, ECO:0000269|PubMed:18982020, ECO:0000269|PubMed:19484493}. R-ATH-110056;R-ATH-112411;R-ATH-2559580;R-ATH-445144;R-ATH-450302;R-ATH-5674135;R-ATH-5674499; 2.7.12.2; 2.7.12.2 39210,39252,37992 Mitogen-activated protein kinase kinase 1 (AtMKK1) (MAP kinase kinase 1) (EC 2.7.12.2) (AtMEK1) (NMAPKK),MAP kinase/ ERK kinase 1 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase kinase activity [GO:0004708]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response, incompatible interaction [GO:0009814]; regulation of mitotic cell cycle [GO:0007346]; response to hydrogen peroxide [GO:0042542]; response to molecule of bacterial origin [GO:0002237]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in roots, stem, flowers and siliques. {ECO:0000269|PubMed:9426629}. locus:2120855; AT4G26070 MAP kinase ERK kinase 1 NA NA NA NA NA NA NA ENOG411EAY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like Os06g0293100 protein,Os06g0293000 protein (Fragment) A0A0P0WVF5,A0A0P0WVF8 A0A0P0WVF5_ORYSJ,A0A0P0WVF8_ORYSJ Os06g0293100 OSNPB_060293100,Os06g0293000 OSNPB_060293000 ENOG411EAY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EAY0 FLOT2,FLOT3,FLOT1 Q4V3D6,Q9LV90,Q501E6 FLOT2_ARATH,FLOT3_ARATH,FLOT1_ARATH Flotillin-like protein 2 (Nodulin-like protein 2),Flotillin-like protein 3 (Nodulin-like protein 3),Flotillin-like protein 1 (AtFLOT1) (Nodulin-like protein 1) FUNCTION: May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles. {ECO:0000250}. 51419,52833,52310 Flotillin-like protein 2 (Nodulin-like protein 2),Flotillin-like protein 3 (Nodulin-like protein 3),Flotillin-like protein 1 (AtFLOT1) (Nodulin-like protein 1) caveola [GO:0005901]; vacuolar membrane [GO:0005774],caveola [GO:0005901]; plasma membrane [GO:0005886]; vacuole [GO:0005773],caveola [GO:0005901]; endosome [GO:0005768]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; cellular response to hypoxia [GO:0071456]; endocytosis [GO:0006897]; membrane invagination [GO:0010324] locus:2146975;,locus:2177729;,locus:2146965; AT5G25260,AT5G64870,AT5G25250 SPFH domain / Band 7 family NA NA NA NA NA NA NA ENOG411EAY3 PPI4 Q8VZN4 PPI4_ARATH Proton pump-interactor 4 FUNCTION: May regulate plasma membrane ATPase activity. {ECO:0000250}. 51017 Proton pump-interactor 4 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; regulation of proton transport [GO:0010155] locus:2037059; AT1G53110 Inherit from KOG: chromosome 6 open reading frame 203 NA NA NA NA NA NA NA ENOG411EAY9 F4J8C8,A0A178V5Z5 F4J8C8_ARATH,A0A178V5Z5_ARATH Actin cross-linking protein, putative (DUF569) 33545,30861 Actin cross-linking protein, putative (DUF569) integral component of membrane [GO:0016021] locus:1006230249; AT3G01311 Fascin domain NA NA NA NA NA NA NA ENOG411EAY8 Q9M9R5,F4HW68 Q9M9R5_ARATH,F4HW68_ARATH Ankyrin repeat family protein (F14L17.26 protein),Ankyrin repeat family protein 49881,44723 Ankyrin repeat family protein (F14L17.26 protein),Ankyrin repeat family protein integral component of membrane [GO:0016021] locus:2012532; AT1G14480 ankyrin repeat family protein NA NA NA NA NA NA NA ENOG411EAYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os06g0161400 protein,Os12g0162800 protein (Fragment) Q0DEC4,A0A0N7KTM1 Q0DEC4_ORYSJ,A0A0N7KTM1_ORYSJ Os06g0161400 Os06g0161400 OSNPB_060161400,Os12g0162800 OSNPB_120162800 ENOG411EAYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Strawberry notch homolog Os08g0223700 protein A0A0P0XDZ9 A0A0P0XDZ9_ORYSJ Os08g0223700 OSNPB_080223700 ENOG411EAYD F4HUV0 F4HUV0_ARATH Pentatricopeptide repeat (PPR) superfamily protein 43086 Pentatricopeptide repeat (PPR) superfamily protein locus:2010429; AT1G28000 BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIR AT1G28020.1) NA NA NA NA NA NA NA ENOG411EAYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain Cyclin-D1-1 (G1/S-specific cyclin-D1-1) (CycD1;1) Q67V81 CCD11_ORYSJ CYCD1-1 Os06g0236600 LOC_Os06g12980 OsJ_019891 OSJNBa0080E19.38 ENOG411EAYC MTE17.27 Q949Z3,F4K4W6,A0A1P8BF50,A0A1P8BF26 Q949Z3_ARATH,F4K4W6_ARATH,A0A1P8BF50_ARATH,A0A1P8BF26_ARATH Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 50349,48834,54196,55711 Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein mRNA binding [GO:0003729],RNA binding [GO:0003723] locus:2173967; AT5G55550 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EAYB BCAT1,BCAT-1 Q93Y32,A0A1P8APE4,A0A1P8APA3,A0A1P8APA5,A0A1P8APB7,F4I2Q0,B3H7M6 BCAT1_ARATH,A0A1P8APE4_ARATH,A0A1P8APA3_ARATH,A0A1P8APA5_ARATH,A0A1P8APB7_ARATH,F4I2Q0_ARATH,B3H7M6_ARATH Branched-chain-amino-acid aminotransferase 1, mitochondrial (Atbcat-1) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) FUNCTION: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine (By similarity). {ECO:0000250}. MISCELLANEOUS: Branched-chain amino acids are synthesized in chloroplasts, whereas the degradation takes place in mitochondria. PATHWAY: Amino-acid degradation; L-leucine degradation; 4-methyl-2-oxopentanoate from L-leucine (aminotransferase route): step 1/1.; PATHWAY: Amino-acid degradation; L-valine degradation. R-ATH-70895; 2.6.1.42 41934,41069,52132,52997,44848,33785,34420 Branched-chain-amino-acid aminotransferase 1, mitochondrial (Atbcat-1) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) mitochondrion [GO:0005739]; branched-chain-amino-acid transaminase activity [GO:0004084]; L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; leucine catabolic process [GO:0006552]; valine catabolic process [GO:0006574],integral component of membrane [GO:0016021]; L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; branched-chain amino acid biosynthetic process [GO:0009082],L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; branched-chain amino acid biosynthetic process [GO:0009082] locus:2201931; AT1G10060 branched-chain-amino-acid aminotransferase NA NA NA NA NA NA NA ENOG411EAYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatase 2C NA NA NA NA NA NA NA ENOG411EAYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M50 NA NA NA NA NA NA NA ENOG411EAYH Q1PE10,Q9SY96,F4HWT7 FK102_ARATH,FBK25_ARATH,F4HWT7_ARATH F-box/kelch-repeat protein At4g39590,Putative F-box/kelch-repeat protein At1g61540,Galactose oxidase/kelch repeat superfamily protein 45744,46397,14135 F-box/kelch-repeat protein At4g39590,Putative F-box/kelch-repeat protein At1g61540,Galactose oxidase/kelch repeat superfamily protein locus:2122516;,locus:2200858;,locus:2023787; AT4G39590,AT1G61540,AT1G48190 Kelch motif NA NA NA NA NA NA NA ENOG411EAYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA reductase subunit NA NA NA NA NA NA NA ENOG411EAYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os01g0342200 protein A0A0N7KCW8 A0A0N7KCW8_ORYSJ Os01g0342200 OSNPB_010342200 ENOG411DXWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor WRKY transcription factor WRKY28 (OsWRKY28) Q0DAJ3 WRK28_ORYSJ WRKY28 Os06g0649000 OsJ_22168 OSJNBa0062J02.29 OSNPB_060649000 DISRUPTION PHENOTYPE: Increased basal resistance to rice blast mediated by M.oryzae. {ECO:0000269|PubMed:21726398}. FUNCTION: Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. ENOG411EHRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2V7 Q9C666 Q9C666_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (At1g26220) (Uncharacterized protein At1g26220/F28B23_27) (Uncharacterized protein F28B23.27) 21851 Acyl-CoA N-acyltransferases (NAT) superfamily protein (At1g26220) (Uncharacterized protein At1g26220/F28B23_27) (Uncharacterized protein F28B23.27) chloroplast [GO:0009507]; aralkylamine N-acetyltransferase activity [GO:0004059]; melatonin biosynthetic process [GO:0030187] locus:2028766; AT1G26220 Acetyltransferase (GNAT) family Serotonin N-acetyltransferase 2, chloroplastic (OsSNAT2) (EC 2.3.1.87) Q6Z1Y6 SNAT2_ORYSJ SNAT2 Os08g0102000 LOC_Os08g01170 B1147B12.22 OsJ_25726 P0015C07.5 FUNCTION: Catalyzes the N-acetylation of serotonin into N-acetylserotonin, the penultimate step in the synthesis of melatonin (PubMed:27121038). Catalyzes in vitro the N-acetylation of tryptamine to produce N-acetyltryptamine, 5-methoxytryptamine to produce melatonin and tyramine to produce N-acetyltyramine (PubMed:27121038). {ECO:0000269|PubMed:27121038}. ENOG411E2V5 A0A1P8AU49,F4ID96 A0A1P8AU49_ARATH,F4ID96_ARATH No-apical-meristem-associated carboxy-terminal domain protein 23477,32994 No-apical-meristem-associated carboxy-terminal domain protein locus:504956109; AT1G66235 NA Os02g0603500 protein,Os12g0264200 protein A0A0P0VLE0,A0A0P0Y8S5 A0A0P0VLE0_ORYSJ,A0A0P0Y8S5_ORYSJ Os02g0603500 OSNPB_020603500,Os12g0264200 OSNPB_120264200 ENOG411E2V4 MQD22.7,MQD22.11 Q9FJR8,Q9FJR4 Q9FJR8_ARATH,Q9FJR4_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 20156,18589 Plant invertase/pectin methylesterase inhibitor superfamily protein cell periphery [GO:0071944]; integral component of membrane [GO:0016021]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910],cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2171002;,locus:2170967; AT5G46930,AT5G46970 Invertase pectin methylesterase inhibitor Os02g0103300 protein (cDNA clone:J023030J21, full insert sequence) Q0E4S1 Q0E4S1_ORYSJ Os02g0103300 Os02g0103300 OSNPB_020103300 ENOG411E2V2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein NA NA NA NA NA NA NA ENOG411E5G6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 C2H2 transcription factor (Os03g0820300 protein) (Putative Cys2/His2 zinc-finger protein) (Zinc finger protein ZFP182) (Zinc finger, C2H2 type family protein, expressed) (cDNA clone:J013170H07, full insert sequence) Q84T96 Q84T96_ORYSJ OJ1754_E06.19 LOC_Os03g60560 Os03g0820300 OsJ_13136 OSNPB_030820300 ENOG411E2V0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EFBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5G8 Q9SSC6 Q9SSC6_ARATH F18B13.21 protein (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g80130) 33595 F18B13.21 protein (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g80130) membrane [GO:0016020]; response to oxidative stress [GO:0006979] locus:2016229; AT1G80130 NA NA NA NA NA NA NA NA ENOG411E2V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os05g0163300 protein (cDNA clone:001-200-A03, full insert sequence) Q0DKH4 Q0DKH4_ORYSJ Os05g0163300 Os05g0163300 OSNPB_050163300 ENOG411EHM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHR5 AGP24 Q5PP12 AGP24_ARATH Arabinogalactan peptide 24 (AG-peptide 24) FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. {ECO:0000305}. 7051 Arabinogalactan peptide 24 (AG-peptide 24) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2168813; AT5G40730 NA NA NA NA NA NA NA NA ENOG411EFBP CML32,CML31,CML33 Q9LF55,Q9SJN6,Q9SRP4 CML32_ARATH,CML31_ARATH,CML33_ARATH Probable calcium-binding protein CML32 (Calmodulin-like protein 32),Probable calcium-binding protein CML31 (Calmodulin-like protein 31),Probable calcium-binding protein CML33 (Calmodulin-like protein 33) FUNCTION: Potential calcium sensor. {ECO:0000250}. 16320,16271,15068 Probable calcium-binding protein CML32 (Calmodulin-like protein 32),Probable calcium-binding protein CML31 (Calmodulin-like protein 31),Probable calcium-binding protein CML33 (Calmodulin-like protein 33) calcium ion binding [GO:0005509] locus:2157467;,locus:2049460;,locus:2099709; AT5G17470,AT2G36180,AT3G03400 calcium ion binding NA NA NA NA NA NA NA ENOG411E2VR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E2VF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN Os07g0417600 protein (Putative thaumatin-like protein) (cDNA, clone: J090079J16, full insert sequence) Q8GVI7 Q8GVI7_ORYSJ Os07g0417600 Os07g0417600 OSJNBa0066B06.130 OSNPB_070417600 ENOG411E2VN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E2VM MXH1.2 Q9SJB9,Q9FKI2,F4K1D3 Q9SJB9_ARATH,Q9FKI2_ARATH,F4K1D3_ARATH Nucleic acid-binding, OB-fold-like protein (Putative translation initiation factor eIF-1A),Nucleic acid-binding, OB-fold-like protein (Putative translation initiation factor eIF-1A) (Similarity to translation initiation factor) (Uncharacterized protein At5g35680) (Uncharacterized protein MXH1.2),Nucleic acid-binding, OB-fold-like protein FUNCTION: Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. {ECO:0000256|RuleBase:RU004365}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 16638,16590,17022 Nucleic acid-binding, OB-fold-like protein (Putative translation initiation factor eIF-1A),Nucleic acid-binding, OB-fold-like protein (Putative translation initiation factor eIF-1A) (Similarity to translation initiation factor) (Uncharacterized protein At5g35680) (Uncharacterized protein MXH1.2),Nucleic acid-binding, OB-fold-like protein cytosol [GO:0005829]; translation initiation factor activity [GO:0003743],translation initiation factor activity [GO:0003743] locus:2058389;,locus:2177281; AT2G04520,AT5G35680 Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (By similarity) Eukaryotic translation initiation factor 1A (Os06g0342200 protein) (Putative eukaryotic translation initiation factor 1A) (cDNA clone:002-157-A08, full insert sequence) (cDNA clone:J013020M15, full insert sequence),Eukaryotic translation initiation factor 1A (Os02g0300700 protein) (cDNA clone:J023012P17, full insert sequence) Q7Y1V2,Q7Y1V3 Q7Y1V2_ORYSJ,Q7Y1V3_ORYSJ eif-1a-OF2 Os06g0342200 OsJ_21246 OSNPB_060342200 P0459H02.13,eif-1a-OF1 Os02g0300700 OsJ_06368 OSJNBa0010K08.4 OSJNBa0030M21.36 OSNPB_020300700 FUNCTION: Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. {ECO:0000256|RuleBase:RU004365}. ENOG411E5GB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0769700 protein) (cDNA clone:001-120-E01, full insert sequence) Q75KB0 Q75KB0_ORYSJ OSJNBb0106M04.6 LOC_Os03g55980 Os03g0769700 OsJ_12733 OSJNBa0072F13.16 OSNPB_030769700 ENOG411E5GG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Probable N6-adenine methyltransferase NA NA NA NA NA NA NA ENOG411DQH9 Q9SJQ0,Q94KE3,A8MR07 Q9SJQ0_ARATH,Q94KE3_ARATH,A8MR07_ARATH Pyruvate kinase (EC 2.7.1.40) PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5. {ECO:0000256|RuleBase:RU000504}. ARA:AT3G52990-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.40 57508,57495,51890 Pyruvate kinase (EC 2.7.1.40) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096],cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686],kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743] locus:2044928;,locus:2085226; AT2G36580,AT3G52990 Pyruvate kinase Pyruvate kinase 1, cytosolic (OsPK1) (EC 2.7.1.40),Pyruvate kinase 2, cytosolic (OsPK2) (EC 2.7.1.40) Q2RAK2,Q2QXR8 KPYC1_ORYSJ,KPYC2_ORYSJ Os11g0148500 LOC_Os11g05110 OsJ_32969,Os12g0145700 LOC_Os12g05110 OsJ_35209 DISRUPTION PHENOTYPE: Dwarf phenotype with panicle enclosure, reduced seed set and outgrowth of axillary buds from culm nodes. {ECO:0000269|PubMed:21805151}. FUNCTION: Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation. Is critical for plant growth and development. {ECO:0000269|PubMed:21805151}.,FUNCTION: Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation. {ECO:0000250|UniProtKB:Q2RAK2}. ENOG411DQH1 Q6NKN2,A0A1P8B7H6,A0A1P8B7K2,A0A1P8B7J8,A0A1P8B7I5,F4JUP6,F4J440,A0A1I9LT44 Q6NKN2_ARATH,A0A1P8B7H6_ARATH,A0A1P8B7K2_ARATH,A0A1P8B7J8_ARATH,A0A1P8B7I5_ARATH,F4JUP6_ARATH,F4J440_ARATH,A0A1I9LT44_ARATH Alpha/beta-Hydrolases superfamily protein (At3g23540),Alpha/beta-Hydrolases superfamily protein 63021,49218,55305,45074,58491,61916,46931,59724 Alpha/beta-Hydrolases superfamily protein (At3g23540),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787],plasma membrane [GO:0005886]; hydrolase activity [GO:0016787] locus:2088085;,locus:2129585; AT3G23540,AT4G14290 Inherit from KOG: Family with sequence similarity 108 member Os03g0359000 protein (Fragment) Q0DRS5 Q0DRS5_ORYSJ Os03g0359000 OSNPB_030359000 ENOG411DQH0 Q944J2,Q8VZA8,Q84JM3,A0A1P8BG22,A0A1P8BG16,F4JM17,F4JM15,F4K7C7,F4K7C8 Q944J2_ARATH,Q8VZA8_ARATH,Q84JM3_ARATH,A0A1P8BG22_ARATH,A0A1P8BG16_ARATH,F4JM17_ARATH,F4JM15_ARATH,F4K7C7_ARATH,F4K7C8_ARATH At4g29227 (PfkB-like carbohydrate kinase family protein),PfkB-like carbohydrate kinase family protein (Uncharacterized protein At4g28706),PfkB-like carbohydrate kinase family protein (Uncharacterized protein At5g43910),PfkB-like carbohydrate kinase family protein 43080,43385,30895,34833,33389,43314,47353,39134,30466 At4g29227 (PfkB-like carbohydrate kinase family protein),PfkB-like carbohydrate kinase family protein (Uncharacterized protein At4g28706),PfkB-like carbohydrate kinase family protein (Uncharacterized protein At5g43910),PfkB-like carbohydrate kinase family protein kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773],kinase activity [GO:0016301],chloroplast [GO:0009507]; kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773] locus:505006532;,locus:2149534; AT4G28706,AT5G43910 carbohydrate kinase family protein Os08g0566400 protein (PfkB type carbohydrate kinase protein family-like) (cDNA clone:J013119N07, full insert sequence),Os08g0566400 protein (Fragment) Q6Z1P3,A0A0P0XIC5 Q6Z1P3_ORYSJ,A0A0P0XIC5_ORYSJ Os08g0566400 Os08g0566400 OSJNBa0044E16.26 OSNPB_080566400,Os08g0566400 OSNPB_080566400 ENOG411DQH3 TIF3B1,EIF3B-2 Q9C5Z1,Q8GUM1,F4K4D5,F4I057 EIF3B_ARATH,Q8GUM1_ARATH,F4K4D5_ARATH,F4I057_ARATH Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82),Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110),DPP6 N-terminal domain-like protein FUNCTION: RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03001}.,FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. {ECO:0000256|PIRNR:PIRNR036424}.; FUNCTION: RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|SAAS:SAAS00753108}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 81876,82177,84914,25304 Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82),Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110),DPP6 N-terminal domain-like protein eukaryotic translation initiation factor 3 complex [GO:0005852]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369],cytoplasm [GO:0005737]; cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; nucleus [GO:0005634]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446],cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; nucleus [GO:0005634]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446] locus:2145289;,locus:2143621;,locus:505006174; AT5G27640,AT5G25780,AT1G49015 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) Q8S7Q0 Q8S7Q0_ORYSJ Os10g0569200 LOC_Os10g41960 Os10g0569200 OSJNBa0095C07.3 OSNPB_100569200 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. {ECO:0000256|PIRNR:PIRNR036424}.; FUNCTION: RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|SAAS:SAAS00753108}. ENOG411DQH2 ADO3,ADO1,ADO2,ZTL Q9C9W9,Q94BT6,Q8W420,F4KAN2 ADO3_ARATH,ADO1_ARATH,ADO2_ARATH,F4KAN2_ARATH Adagio protein 3 (F-box only protein 2a) (FBX2a) (Flavin-binding kelch repeat F-box protein 1),Adagio protein 1 (Clock-associated PAS protein ZTL) (F-box only protein 2b) (FBX2b) (Flavin-binding kelch repeat F-box protein 1-like protein 2) (FKF1-like protein 2) (LOV kelch protein 1) (Protein ZEITLUPE),Adagio protein 2 (F-box only protein 2c) (FBX2c) (Flavin-binding kelch repeat F-box protein 1-like protein 1) (FKF1-like protein 1) (LOV kelch protein 2),Galactose oxidase/kelch repeat superfamily protein DISRUPTION PHENOTYPE: Late flowering. {ECO:0000269|PubMed:16002617}.,DISRUPTION PHENOTYPE: Accumulation of ADO3 protein during the morning period and early flowering time. {ECO:0000269|PubMed:21518052}.,DISRUPTION PHENOTYPE: Accumulation of ADO3 protein during the morning period but no effect on flowering time. {ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:21518052}. Late flowering-B. Bartel-2000,Abnormal circadian rhythms-S. Kay-2000 FUNCTION: Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaf movement rhythms. Forms a complex with 'GIGANTEA' (GI) to regulate 'CONSTANS' (CO) expression. Promotes CO expression during the light period of long days by decreasing the stability of CDF1 and CDF2 and by interacting directly with the CO protein and stabilizing it. ADO3 function is mainly GI dependent. Does not act as a regulator of CDF1 transcription. The interactions of ADO1/ZTL and ADO2 with ADO3 prevent its interaction with CDF1. {ECO:0000269|PubMed:10847687, ECO:0000269|PubMed:12719523, ECO:0000269|PubMed:14628054, ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:17872410, ECO:0000269|PubMed:19619493, ECO:0000269|PubMed:21518052, ECO:0000269|PubMed:22628657}.,FUNCTION: Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO1) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including the transition to flowering time, hypocotyl elongation, cotyledons and leaf movement rhythms. APRR1/TOC1 and APRR5, but not 'GIGANTEA', are proteolytic substrates of this ubiquitin ligase complex. Blue light enhances cooperative stabilization of 'GIGANTEA' and ADO1/ZTL, leading to amplification and sharpening of the expression profile of APRR1/TOC1. ADO1/ZTL interacts with ADO3, preventing the interaction of ADO3 with CDF1. {ECO:0000269|PubMed:10847686, ECO:0000269|PubMed:10847687, ECO:0000269|PubMed:10998191, ECO:0000269|PubMed:11260718, ECO:0000269|PubMed:14973171, ECO:0000269|PubMed:15447654, ECO:0000269|PubMed:16428597, ECO:0000269|PubMed:17704763, ECO:0000269|PubMed:21518052}.,FUNCTION: Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO2) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including the transition to flowering time, hypocotyl elongation, cotyledons and leaf movement rhythms. APRR1/TOC1 and APRR5 seem to be substrates of the SCF(ADO2) complex. ADO2 interacts with ADO3 and export it to cytoplasmic speckles, preventing the interaction of ADO3 with CDF1. Ubiquitination of ADO2 is not involved in this recruitment. {ECO:0000269|PubMed:11752379, ECO:0000269|PubMed:21518052}. MISCELLANEOUS: 'Adagio' means slowly in Italian.,MISCELLANEOUS: 'Zeitlupe' means slow motion in German.; MISCELLANEOUS: 'Adagio' means slowly in Italian. PATHWAY: Protein modification; protein ubiquitination. 69063,65906,66351,68113 Adagio protein 3 (F-box only protein 2a) (FBX2a) (Flavin-binding kelch repeat F-box protein 1),Adagio protein 1 (Clock-associated PAS protein ZTL) (F-box only protein 2b) (FBX2b) (Flavin-binding kelch repeat F-box protein 1-like protein 2) (FKF1-like protein 2) (LOV kelch protein 1) (Protein ZEITLUPE),Adagio protein 2 (F-box only protein 2c) (FBX2c) (Flavin-binding kelch repeat F-box protein 1-like protein 1) (FKF1-like protein 1) (LOV kelch protein 2),Galactose oxidase/kelch repeat superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; core promoter binding [GO:0001047]; photoreceptor activity [GO:0009881]; circadian rhythm [GO:0007623]; flower development [GO:0009908]; positive regulation of flower development [GO:0009911]; protein ubiquitination [GO:0016567]; protein-chromophore linkage [GO:0018298]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637],cytoplasm [GO:0005737]; nucleus [GO:0005634]; photoreceptor activity [GO:0009881]; flower development [GO:0009908]; protein ubiquitination [GO:0016567]; protein-chromophore linkage [GO:0018298]; rhythmic process [GO:0048511],Cajal body [GO:0015030]; cytosol [GO:0005829]; photoreceptor activity [GO:0009881]; flower development [GO:0009908]; protein ubiquitination [GO:0016567]; protein-chromophore linkage [GO:0018298]; regulation of circadian rhythm [GO:0042752]; rhythmic process [GO:0048511],cytosol [GO:0005829]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; blue light photoreceptor activity [GO:0009882]; circadian rhythm [GO:0007623]; entrainment of circadian clock by photoperiod [GO:0043153]; flower development [GO:0009908]; proteasomal protein catabolic process [GO:0010498]; regulation of circadian rhythm [GO:0042752]; response to red light [GO:0010114]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] DEVELOPMENTAL STAGE: Mainly present during the light phase, and degraded in a proteasome-dependent manner in dark (at protein level). TISSUE SPECIFICITY: Highly expressed in stomata and leaves and to a lower extent in seeds, roots, rosettes, stems and siliques. Also present in sepals and anther filaments. {ECO:0000269|PubMed:10847687, ECO:0000269|PubMed:16002617}.,TISSUE SPECIFICITY: Ubiquitously expressed with higher levels in cotyledons and leaves. {ECO:0000269|PubMed:10847687, ECO:0000269|PubMed:10998191}.,TISSUE SPECIFICITY: Weakly expressed in seedlings, root tips, stems, leaves, flowers, young siliques, sepals and seeds. {ECO:0000269|PubMed:11752379, ECO:0000269|PubMed:15310821}. locus:2200176;,locus:505006254;,locus:2172994; AT1G68050,AT5G57360,AT2G18915 Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor due to the presence of FMN that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex Adagio-like protein 3,Os11g0547000 protein (Fragment) Q2R2W1,A0A0P0Y317 ADO3_ORYSJ,A0A0P0Y317_ORYSJ Os11g0547000 LOC_Os11g34460,Os11g0547000 OSNPB_110547000 FUNCTION: Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaf movement rhythms (By similarity). {ECO:0000250}. MISCELLANEOUS: 'Adagio' means slowly in Italian. ENOG411DQH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os01g0282100 protein,Os05g0414100 protein (Fragment) A0A0P0V1N0,A0A0P0WMI0 A0A0P0V1N0_ORYSJ,A0A0P0WMI0_ORYSJ Os01g0282100 OSNPB_010282100,Os05g0414100 OSNPB_050414100 ENOG411DQH4 MSR4 P54150 MSRA4_ARATH Peptide methionine sulfoxide reductase A4, chloroplastic (AtMSRA4) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. Prevents the methionine sulfoxidation of the heat shock protein HSP21 and its subsequent inactivation. MSRA family specifically reduces the MetSO S-enantiomer. {ECO:0000269|PubMed:10806242, ECO:0000269|PubMed:11874568}. 1.8.4.11; 1.8.4.11 28644 Peptide methionine sulfoxide reductase A4, chloroplastic (AtMSRA4) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; peptide-methionine (S)-S-oxide reductase activity [GO:0008113]; cellular response to oxidative stress [GO:0034599]; response to cytokinin [GO:0009735]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, and at lower levels in stems and flowers (at protein level). {ECO:0000269|PubMed:10806242}. locus:2117313; AT4G25130 peptide methionine sulfoxide reductase Peptide methionine sulfoxide reductase A4, chloroplastic (OsMSRA4) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) Q336R9 MSRA4_ORYSJ MSRA4 Os10g0563600 LOC_Os10g41400 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Involved in abiotic and salt stress responses. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer. {ECO:0000269|PubMed:19415325}. ENOG411DQHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os09g0550500 protein (Fragment),Os09g0550600 protein,Os09g0551500 protein,Os09g0551251 protein,Os09g0550300 protein,Os09g0551000 protein,Os09g0551201 protein,Os09g0551400 protein,Os09g0550700 protein,Os09g0551150 protein,Os09g0111950 protein,Os04g0220800 protein,Os12g0533100 protein A0A0P0XQ09,A0A0P0XQ04,A0A0P0XRC3,A0A0P0XQ32,A0A0P0XPZ9,A0A0P0XQJ7,A0A0N7KR84,A0A0P0XRC1,A0A0P0XQY3,A0A0P0XQ91,A0A0P0XIT7,A0A0P0W7I5,A0A0P0YAQ7 A0A0P0XQ09_ORYSJ,A0A0P0XQ04_ORYSJ,A0A0P0XRC3_ORYSJ,A0A0P0XQ32_ORYSJ,A0A0P0XPZ9_ORYSJ,A0A0P0XQJ7_ORYSJ,A0A0N7KR84_ORYSJ,A0A0P0XRC1_ORYSJ,A0A0P0XQY3_ORYSJ,A0A0P0XQ91_ORYSJ,A0A0P0XIT7_ORYSJ,A0A0P0W7I5_ORYSJ,A0A0P0YAQ7_ORYSJ Os09g0550500 OSNPB_090550500,Os09g0550600 OSNPB_090550600,Os09g0551500 OSNPB_090551500,Os09g0551251 OSNPB_090551251,Os09g0550300 OSNPB_090550300,Os09g0551000 OSNPB_090551000,Os09g0551201 OSNPB_090551201,Os09g0551400 OSNPB_090551400,Os09g0550700 OSNPB_090550700,Os09g0551150 OSNPB_090551150,Os09g0111950 OSNPB_090111950,Os04g0220800 OSNPB_040220800,Os12g0533100 OSNPB_120533100 ENOG411DQHX CAS Q9ZPY7 XPO2_ARATH Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) FUNCTION: Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm (By similarity). {ECO:0000250}. 108657 Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) cytosol [GO:0005829]; membrane [GO:0016020]; nuclear envelope [GO:0005635]; plasmodesma [GO:0009506]; nuclear export signal receptor activity [GO:0005049]; Ran GTPase binding [GO:0008536]; protein export from nucleus [GO:0006611]; protein import into nucleus [GO:0006606] locus:2039109; AT2G46520 CAS/CSE protein C-terminus Os01g0235400 protein (Fragment) Q0JP92,A0A0P0V093 Q0JP92_ORYSJ,A0A0P0V093_ORYSJ Os01g0235400 Os01g0235400 OSNPB_010235400,Os01g0235400 OSNPB_010235400 ENOG411DQHZ DFRA P51102 DFRA_ARATH Dihydroflavonol 4-reductase (DFR) (EC 1.1.1.219) (Dihydrokaempferol 4-reductase) (Flavanone 4-reductase) (FNR) (EC 1.1.1.234) (Protein TRANSPARENT TESTA 3) Yellow seed coat-NA-2001 FUNCTION: Bifunctional enzyme involved in flavonoid metabolism. {ECO:0000250|UniProtKB:Q9XES5}. PATHWAY: Pigment biosynthesis; anthocyanin biosynthesis. 1.1.1.219; 1.1.1.219; 1.1.1.234 42775 Dihydroflavonol 4-reductase (DFR) (EC 1.1.1.219) (Dihydrokaempferol 4-reductase) (Flavanone 4-reductase) (FNR) (EC 1.1.1.234) (Protein TRANSPARENT TESTA 3) extrinsic component of endoplasmic reticulum membrane [GO:0042406]; coenzyme binding [GO:0050662]; dihydrokaempferol 4-reductase activity [GO:0045552]; flavanone 4-reductase activity [GO:0047890]; anthocyanin-containing compound biosynthetic process [GO:0009718] locus:2165427; AT5G42800 Dihydroflavonol4-reductase Os01g0633500 protein (Fragment) A0A0P0V5N7 A0A0P0V5N7_ORYSJ Os01g0633500 OSNPB_010633500 ENOG411DQHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Phospholipase D (EC 3.1.4.4) Q65XR9 Q65XR9_ORYSJ Os05g0171000 OsJ_17289 OSNPB_050171000 P0685E10.10 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ENOG411DQHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exocyst complex subunit Sec15-like Exocyst complex component Q7XEN0 Q7XEN0_ORYSJ Os10g0415200 LOC_Os10g27990 Os10g0414950 Os10g0415200 OsJ_31516 OSNPB_100415200 FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. {ECO:0000256|PIRNR:PIRNR025007}. ENOG411DQHS DDL Q8W4D8,Q9ZQ27 DDL_ARATH,Q9ZQ27_ARATH FHA domain-containing protein DDL (Protein DAWDLE),SMAD/FHA domain protein (Uncharacterized protein At2g24410) DISRUPTION PHENOTYPE: Delayed growth and reduced fertility. Defective roots, shoots and flowers. Reduced seed set. Reduced levels of primary miRNAs as well as mature miRNAs. {ECO:0000269|PubMed:16679419, ECO:0000269|PubMed:18632581}. Short roots; Abnormal floral organ number and morphology; Reduced fertility; Late flowering-J. Walker-2006 FUNCTION: Involved in the microRNA (miRNA) and short interfering RNA (siRNA) biogenesis. May facilitate DCL1 to access or recognize primary miRNAs. Binds RNA non-specifically. {ECO:0000269|PubMed:18632581}. 36953,9571 FHA domain-containing protein DDL (Protein DAWDLE),SMAD/FHA domain protein (Uncharacterized protein At2g24410) chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; cell proliferation [GO:0008283]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; regulation of developmental growth [GO:0048638],mRNA binding [GO:0003729] TISSUE SPECIFICITY: Expressed in roots, lateral roots, vascular strands of roots and leaves, vegetative meristems, pollen and developing seeds. {ECO:0000269|PubMed:16679419}. locus:2085740;,locus:2061052; AT3G20550,AT2G24410 FHA domain Os05g0545600 protein A0A0P0WQD6 A0A0P0WQD6_ORYSJ Os05g0545600 OSNPB_050545600 ENOG411DQHR Q8GXW0,F4K9G7 Q8GXW0_ARATH,F4K9G7_ARATH At5g01670 (NAD(P)-linked oxidoreductase superfamily protein) (Putative aldose reductase),NAD(P)-linked oxidoreductase superfamily protein R-ATH-156590;R-ATH-193144;R-ATH-193368;R-ATH-193775;R-ATH-193807;R-ATH-196108;R-ATH-2162123;R-ATH-5365859;R-ATH-5652227;R-ATH-5661270; 36581,39655 At5g01670 (NAD(P)-linked oxidoreductase superfamily protein) (Putative aldose reductase),NAD(P)-linked oxidoreductase superfamily protein oxidoreductase activity [GO:0016491] locus:2149715; AT5G01670 aldose reductase Os05g0474600 protein (Putative aldose reductase) (cDNA clone:J013074I15, full insert sequence) (cDNA clone:J033111K17, full insert sequence) Q65WW3 Q65WW3_ORYSJ Os05g0474600 Os05g0474600 OsJ_18902 OSNPB_050474600 P0486C01.12 ENOG411DQHU SAD2 F4IRR2 SAD2_ARATH Importin beta-like SAD2 (Protein ENHANCED MIRNA ACTIVITY 1) (Protein SUPER SENSITIVE TO ABA AND DROUGHT 2) (Protein UNARMED 9) DISRUPTION PHENOTYPE: Early flowering and increased sensitivity to inhibition of seed germination and plant growth by exogenous ABA. {ECO:0000269|PubMed:16889648}. Hypersensitive to ABA in seed germination and seedling growth.,urm9 mutant leaves produce fewer trichomes than wild-type (ca. 30% reduction). Morphology and branching number of urm9 trichomes are normal.,urm9 enhances the hypomorphic gl1-2 allele and results in almost complete glabrousness (loss of trichomes) in normal growth condition. urm9 gl1-2 double mutant shows strong but not complete defect in wounding and jasmonate-induced increase of trichomes. GL3-GFP fusion protein is mis-localized in a subset of urm9 gl1-2 epidermal cell nuclei. urm9 is recessive in gl1-2 background. gl1-2 is incompletely dominant in urm9 background. Germination and seedling growth sensitive to ABA-J. Zhu-2006 FUNCTION: Functions probably in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with other importin subunits (Probable). Involved in the regulation of the abscisic acid (ABA)-mediated pathway in response to cold or salt stress (PubMed:16889648). Involved in UV-B responses by regulating accumulation of UV-absorbing pigments through mediation of MYB4 nuclear transport (PubMed:17993626). Involved in trichome initiation by controlling GL1, GL2, GL3 and TTG1 transcription and may affect an upstream regulator of GL3 and disrupt complex function (PubMed:18713401, PubMed:19234066). Acts as negative regulator miRNA activity by regulating miRNA loading into AGO1 complexes (PubMed:21984696). {ECO:0000269|PubMed:16889648, ECO:0000269|PubMed:17993626, ECO:0000269|PubMed:18713401, ECO:0000269|PubMed:19234066, ECO:0000269|PubMed:21984696, ECO:0000305}. R-ATH-5578749; 119247 Importin beta-like SAD2 (Protein ENHANCED MIRNA ACTIVITY 1) (Protein SUPER SENSITIVE TO ABA AND DROUGHT 2) (Protein UNARMED 9) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear envelope [GO:0005635]; nucleus [GO:0005634]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; miRNA loading onto RISC involved in gene silencing by miRNA [GO:0035280]; protein import into nucleus [GO:0006606]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed in roots, epidermal and guard cells of leaves, stems and siliques. {ECO:0000269|PubMed:16889648}. locus:2065939; AT2G31660 importin-7 homolog Os04g0337300 protein (Fragment),Os02g0474700 protein (Putative Importin 7 18:1 > 18:0 > 16:1. Plays an essential role in the supply of saturated fatty acids necessary for plant growth and seed development. Contributes to 16:0 production particularly in flowers. May be involved in the synthesis of long chain fatty acid. {ECO:0000269|PubMed:10859193, ECO:0000269|PubMed:12061798, ECO:0000269|PubMed:12671095, ECO:0000269|PubMed:15531590, ECO:0000269|PubMed:18263779, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:7840673}. MISCELLANEOUS: Plants silencing FATB, show reduced level of palmitate in flowers and seeds. {ECO:0000305|PubMed:10859193}. ARA:AT1G08510-MONOMER;MetaCyc:AT1G08510-MONOMER; 3.1.2.14; 3.1.2.- 45687 Palmitoyl-acyl carrier protein thioesterase, chloroplastic (EC 3.1.2.-) (16:0-acyl-carrier protein thioesterase) (16:0-ACP thioesterase) (Acyl-[acyl-carrier-protein] hydrolase) (Acyl-acyl carrier protein thioesterase B1) (AtFATB1) chloroplast [GO:0009507]; plastid [GO:0009536]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl-[acyl-carrier-protein] hydrolase activity [GO:0016297]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Highly expressed in flowers. Expressed in roots, leaves, stems, siliques and seeds. {ECO:0000269|PubMed:10859193, ECO:0000269|PubMed:7840673}. locus:2201786; AT1G08510 myristoyl-acyl carrier protein thioesterase Acyl-[acyl-carrier-protein] hydrolase (EC 3.1.2.-) Q0DB74,Q9SNP5,Q2R045,Q6H643,A0A0P0V363 Q0DB74_ORYSJ,Q9SNP5_ORYSJ,Q2R045_ORYSJ,Q6H643_ORYSJ,A0A0P0V363_ORYSJ Os06g0596300 Os06g0596300 OSNPB_060596300,Os06g0143400 OsJ_20094 OSNPB_060143400 P0535G04.36,LOC_Os11g43820 Os11g0659500 OsJ_34722 OSNPB_110659500,P0030D07.9-1 OJ1282_H11.31-1 Os02g0644700 OSNPB_020644700,Os01g0502300 OSNPB_010502300 FUNCTION: Plays an essential role in chain termination during de novo fatty acid synthesis. {ECO:0000256|RuleBase:RU363096}. ENOG411DTZ8 ILA F4I893,A0A1P8AT97 ILA_ARATH,A0A1P8AT97_ARATH Protein ILITYHIA,ILITYHIA DISRUPTION PHENOTYPE: Reduced growth, pale or yellow leaves, frequent enations and pollen defect resulting in sterility. Enhanced susceptibility to bacterial infection. {ECO:0000269|PubMed:20360018}. Mutant plants are much smaller in size than Col-0 wild type and they have serrated leaves that are yellow to light green in color. Homozygous mutants are sterile and must be propagated as heterozygotes.,Mutant plants are much smaller in size than Col-0 wild type and they have serrated leaves that are yellow to light green in color. Homozygous mutants are sterile and must be propagated as heterozygotes. Embryo defective; Transition-U. Grossniklaus-2008 FUNCTION: Involved in immunity against bacterial infection and in non-host resistance (PubMed:20360018). Required for embryo development (PubMed:17915010). Required for systemic acquired resistance, but functions in an salicylic acid-independent manner (PubMed:20360018). Required for bacterium-triggered stomatal closure response (PubMed:21998587). {ECO:0000269|PubMed:17915010, ECO:0000269|PubMed:20360018, ECO:0000269|PubMed:21998587}. MISCELLANEOUS: This protein was called 'ILITYHIA' after the Greek goddess of childbirth. {ECO:0000305|PubMed:17915010}.; MISCELLANEOUS: Unlike other GCN1 homologs, ILA is not a component of the MOS4-associated complex (MSC), a protein complex with homology to the nineteen complex (NTC) in yeast and human. {ECO:0000305|PubMed:20360018}. 294075,293158 Protein ILITYHIA,ILITYHIA cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; protein kinase binding [GO:0019901]; protein kinase regulator activity [GO:0019887]; ribosome binding [GO:0043022]; cellular response to stress [GO:0033554]; defense response to bacterium [GO:0042742]; induced systemic resistance [GO:0009682]; innate immune response [GO:0045087]; positive regulation of kinase activity [GO:0033674]; regulation of translation [GO:0006417],protein kinase binding [GO:0019901]; protein kinase regulator activity [GO:0019887]; ribosome binding [GO:0043022]; cellular response to stress [GO:0033554]; positive regulation of kinase activity [GO:0033674]; regulation of translation [GO:0006417] locus:2010891; AT1G64790 translational activator Os03g0721200 protein (Fragment) Q0DP22,A0A0P0W2R6 Q0DP22_ORYSJ,A0A0P0W2R6_ORYSJ Os03g0721200 Os03g0721200 OSNPB_030721200,Os03g0721200 OSNPB_030721200 ENOG411DTZ6 PHO1;H3,PHO1-H5,PHO1-H2,PHO1-H6,PHO1-H9 Q6R8G7,Q6R8G5,Q6R8G8,Q6R8G4,Q9LJW0,A0A1P8B091,A0A1P8AX65 PHO13_ARATH,PHO15_ARATH,PHO12_ARATH,PHO16_ARATH,PHO19_ARATH,A0A1P8B091_ARATH,A0A1P8AX65_ARATH Phosphate transporter PHO1 homolog 3 (Protein PHO1 homolog 3) (AtPHO1;H3),Phosphate transporter PHO1 homolog 5 (Protein PHO1 homolog 5) (AtPHO1;H5),Phosphate transporter PHO1 homolog 2 (Protein PHO1 homolog 2) (AtPHO1;H2),Phosphate transporter PHO1 homolog 6 (Protein PHO1 homolog 6) (AtPHO1;H6),Phosphate transporter PHO1 homolog 9 (Protein PHO1 homolog 9) (AtPHO1;H9),EXS (ERD1/XPR1/SYG1) family protein FUNCTION: May transport inorganic phosphate (Pi). {ECO:0000250}. 93837,95053,93333,87852,92441,69033,68624 Phosphate transporter PHO1 homolog 3 (Protein PHO1 homolog 3) (AtPHO1;H3),Phosphate transporter PHO1 homolog 5 (Protein PHO1 homolog 5) (AtPHO1;H5),Phosphate transporter PHO1 homolog 2 (Protein PHO1 homolog 2) (AtPHO1;H2),Phosphate transporter PHO1 homolog 6 (Protein PHO1 homolog 6) (AtPHO1;H6),Phosphate transporter PHO1 homolog 9 (Protein PHO1 homolog 9) (AtPHO1;H9),EXS (ERD1/XPR1/SYG1) family protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; phosphate ion homeostasis [GO:0055062]; phosphate ion transport [GO:0006817]; zinc ion homeostasis [GO:0055069],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; phosphate ion transport [GO:0006817],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; phosphate ion transport [GO:0006817],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in vascular cylinder of roots, leaves and filaments. Expressed in receptacle and stigma apex. {ECO:0000269|PubMed:15122012}.,TISSUE SPECIFICITY: Expressed in root tips, vascular cylinders of roots and filaments, leaf petioles, stem, receptacle, stigma apex and anther connective tissue. {ECO:0000269|PubMed:15122012}.,TISSUE SPECIFICITY: Expressed at low levels in roots and leaves. {ECO:0000269|PubMed:15122012}.,TISSUE SPECIFICITY: Specifically expressed in anther connective tissue. {ECO:0000269|PubMed:15122012}.,TISSUE SPECIFICITY: Specifically expressed in pollen grains. {ECO:0000269|PubMed:15122012}. locus:2014779;,locus:2056941;,locus:2056911;,locus:2056926;,locus:2092783; AT1G14040,AT2G03240,AT2G03260,AT2G03250,AT3G29060 phosphate transporter PHO1 homolog NA NA NA NA NA NA NA ENOG411DTZ7 GDPD4 F4I8H8 GDPD4_ARATH Glycerophosphodiester phosphodiesterase GDPD4 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 4) (ATGDPD4) 3.1.4.46 37374 Glycerophosphodiester phosphodiesterase GDPD4 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 4) (ATGDPD4) integral component of membrane [GO:0016021]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. {ECO:0000269|PubMed:21323773}. locus:2032323; AT1G71340 glycerophosphoryl diester phosphodiesterase Os11g0236000 protein A0A0P0Y0Y2 A0A0P0Y0Y2_ORYSJ Os11g0236000 OSNPB_110236000 ENOG411DTZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region Os02g0288400 protein (Fragment),Os02g0288700 protein A0A0N7KF42,A0A0P0VHR5 A0A0N7KF42_ORYSJ,A0A0P0VHR5_ORYSJ Os02g0288400 OSNPB_020288400,Os02g0288700 OSNPB_020288700 ENOG411DTZ5 MCM8 Q9SF37,A0A1I9LR95,A0A1I9LR94 MCM8_ARATH,A0A1I9LR95_ARATH,A0A1I9LR94_ARATH Probable DNA helicase MCM8 (EC 3.6.4.12) (Minichromosome maintenance 8) (AtMCM8),Minichromosome maintenance 8 DISRUPTION PHENOTYPE: Reduced fertility and seed numbers due to defects in gametogenesis. {ECO:0000269|PubMed:23300481}. FUNCTION: Probable DNA helicase that plays a role in meiotic double-strand break (DSB) repair, but seems not required for recombination with the homologous chromosome. May be involved with RAD51 in a backup pathway that repairs meiotic DSB without giving meiotic crossover, in parallel to the meiotic homologous recombination which relies on DMC1. {ECO:0000269|PubMed:23300481}. R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962; 3.6.4.12 88125,87841,83147 Probable DNA helicase MCM8 (EC 3.6.4.12) (Minichromosome maintenance 8) (AtMCM8),Minichromosome maintenance 8 nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; DNA replication initiation [GO:0006270]; double-strand break repair via homologous recombination [GO:0000724]; female meiotic nuclear division [GO:0007143]; male meiotic nuclear division [GO:0007140]; pollen development [GO:0009555],ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA replication initiation [GO:0006270] locus:2074934; AT3G09660 DNA replication licensing factor Probable DNA helicase MCM8 (EC 3.6.4.12) (Minichromosome maintenance 8) (OsMCM8),Os05g0464100 protein B9FKM7,A0A0P0WNC4 MCM8_ORYSJ,A0A0P0WNC4_ORYSJ MCM8 Os05g0464100 LOC_Os05g38850 OJ1280_A04.12 OsJ_18839,Os05g0464100 OSNPB_050464100 FUNCTION: Probable DNA helicase that may play a role in DNA repair during meiosis. {ECO:0000250}. ENOG411DTZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CW-type Zinc Finger Os06g0622000 protein (Zinc finger CW-type coiled-coil domain protein 3-like) Q69XV8 Q69XV8_ORYSJ Os06g0622000 OSNPB_060622000 P0040H10.30 ENOG411DTZ3 HPAT1,HPAT3 Q8W4E6,Q9FY51 HPAT1_ARATH,HPAT3_ARATH Hydroxyproline O-arabinosyltransferase 1 (EC 2.4.2.58),Hydroxyproline O-arabinosyltransferase 3 (EC 2.4.2.58) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:24036508). Short-root-hair phenotype (PubMed:25944827). Hpat1 hpat2 double mutants have longer hypocotyls, are early flowering and show early senescence in leaves associated with a decrease in chlorophyll content (PubMed:24036508). Hpat1 hpat3 double mutants have an impaired growth of pollen tubes, thereby causing a transmisson defect through the male gametophyte (PubMed:24036508). Hpat1 hpat2 hpat3 tiple mutants fail to produce detectable levels of Hyp-arabinosides, have low fertility and shorter pollen tubes (PubMed:26577059). {ECO:0000269|PubMed:24036508, ECO:0000269|PubMed:25944827, ECO:0000269|PubMed:26577059}.,DISRUPTION PHENOTYPE: No visible phenotype, but reduced level of arabinosylation of EXT3 (PubMed:24036508). Short-root-hair phenotype (PubMed:25944827). Hpat1 hpat3 double mutants have an impaired growth of pollen tubes, thereby causing a transmisson defect through the male gametophyte (PubMed:24036508, PubMed:26577059). Hpat1 hpat2 hpat3 tiple mutants fail to produce detectable levels of Hyp-arabinosides, have low fertility and shorter pollen tubes (PubMed:26577059). {ECO:0000269|PubMed:24036508, ECO:0000269|PubMed:25944827, ECO:0000269|PubMed:26577059}. FUNCTION: Glycosyltransferase involved in the O-arabinosylation of several proteins including extensins and small signaling peptides (PubMed:24036508, PubMed:26577059). Catalyzes the transfer of the initial L-arabinose to the hydroxyl group of Hyp residues (PubMed:24036508). Contributes redundantly with HPAT2 and HPAT3 to arabinosylation of EXT3 (PubMed:24036508). {ECO:0000269|PubMed:24036508, ECO:0000269|PubMed:26577059}.,FUNCTION: Glycosyltransferase involved in the O-arabinosylation of several proteins including extensins and small signaling peptides (PubMed:24036508, PubMed:26577059). Catalyzes the transfer of the initial L-arabinose to the hydroxyl group of Hyp residues (PubMed:24036508). Contributes redundantly with HPAT1 and HPAT2 to arabinosylation of EXT3, but main contributor to arabinosylation of CLE peptides (PubMed:24036508). {ECO:0000269|PubMed:24036508, ECO:0000269|PubMed:26577059}. ARA:AT5G25265-MONOMER;MetaCyc:AT5G25265-MONOMER;,ARA:AT5G13500-MONOMER; 2.4.2.58 40973,40333 Hydroxyproline O-arabinosyltransferase 1 (EC 2.4.2.58),Hydroxyproline O-arabinosyltransferase 3 (EC 2.4.2.58) cis-Golgi network [GO:0005801]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; hydroxyproline O-arabinosyltransferase activity [GO:1990585]; transferase activity, transferring glycosyl groups [GO:0016757],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; hydroxyproline O-arabinosyltransferase activity [GO:1990585]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:24036508}. locus:504955105;,locus:2185046; AT5G25265,AT5G13500 NA Os01g0272600 protein (cDNA clone:J013120F01, full insert sequence),Os05g0386000 protein (cDNA clone:J013056D23, full insert sequence) (cDNA clone:J023023P13, full insert sequence),Os05g0386000 protein,Os06g0180000 protein (Fragment) Q5NBG3,Q0DIJ1,A0A0P0WLW8,A0A0N7KLM8 Q5NBG3_ORYSJ,Q0DIJ1_ORYSJ,A0A0P0WLW8_ORYSJ,A0A0N7KLM8_ORYSJ Os01g0272600 Os01g0272600 OSNPB_010272600 P0693B08.27,Os05g0386000 Os05g0386000 OsJ_18390 OSNPB_050386000,Os05g0386000 OSNPB_050386000,Os06g0180000 OSNPB_060180000 ENOG411DTZ0 PER29,T12K4_20 Q9LSP0,F4JF10,A0A1I9LSU6 PER29_ARATH,F4JF10_ARATH,A0A1I9LSU6_ARATH Peroxidase 29 (Atperox P29) (EC 1.11.1.7) (ATP40),Peroxidase family protein,Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT3G17070-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 36807,16265,30016 Peroxidase 29 (Atperox P29) (EC 1.11.1.7) (ATP40),Peroxidase family protein,Peroxidase (EC 1.11.1.7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; peroxidase activity [GO:0004601]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2086047;,locus:2096484; AT3G17070,AT3G42570 Peroxidase NA NA NA NA NA NA NA ENOG411E7D3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA low temperature and salt responsive protein Low temperature and salt responsive protein-like (Os06g0184800 protein) Q5SMN0 Q5SMN0_ORYSJ Os06g0184800 OsJ_20371 OSNPB_060184800 P0554A06.21 ENOG411E4SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3223) Os09g0112400 protein (Putative DCL protein) (cDNA clone:002-156-A09, full insert sequence) Q6YXA0 Q6YXA0_ORYSJ Os09g0112400 Os09g0112400 OsJ_28381 OSNPB_090112400 P0646B04.37 ENOG411E4SW APC11 Q9M9L0,A0A178VHK0,A0A1I9LLE4,A0A1I9LLE8 APC11_ARATH,A0A178VHK0_ARATH,A0A1I9LLE4_ARATH,A0A1I9LLE8_ARATH Anaphase-promoting complex subunit 11 (Cyclosome subunit 11),Anaphase-promoting complex/cyclosome 11,Anaphase-promoting complex/cyclosome 11 (Fragment) FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. May recruit the E2 ubiquitin-conjugating enzymes to the complex (By similarity). {ECO:0000250|UniProtKB:Q9NYG5}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 9738,10383,10106,9053 Anaphase-promoting complex subunit 11 (Cyclosome subunit 11),Anaphase-promoting complex/cyclosome 11,Anaphase-promoting complex/cyclosome 11 (Fragment) anaphase-promoting complex [GO:0005680]; cytoplasm [GO:0005737]; cullin family protein binding [GO:0097602]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of mitotic metaphase/anaphase transition [GO:0045842]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],anaphase-promoting complex [GO:0005680]; ubiquitin-protein transferase activity [GO:0004842] AT3G05870 complex subunit Os03g0302700 protein,Os07g0411101 protein (Os07g0411200 protein) (Putative anaphase promoting complex subunit 11) (cDNA, clone: J065192I01, full insert sequence) Q0DSK3,Q8H306 Q0DSK3_ORYSJ,Q8H306_ORYSJ Os03g0302700 Os03g0302700 OsJ_10533 OSNPB_030302700,P0710F09.123 Os07g0411200 Os07g0411101 OsJ_23943 OSNPB_070411200 ENOG411E4ST T22H22.25 Q9ZVL0 Q9ZVL0_ARATH Glycoprotein membrane GPI-anchored (T22H22.25 protein) (Uncharacterized protein At1g54860) (Uncharacterized protein F14C21.37) 21569 Glycoprotein membrane GPI-anchored (T22H22.25 protein) (Uncharacterized protein At1g54860) (Uncharacterized protein F14C21.37) anchored component of membrane [GO:0031225] locus:2011025; AT1G54860 NA NA NA NA NA NA NA NA ENOG411E4SU RPS26C,RPS26B,RPS26A Q9LYK9,Q8LPJ7,P49206 RS263_ARATH,RS262_ARATH,RS261_ARATH 40S ribosomal protein S26-3,40S ribosomal protein S26-2,40S ribosomal protein S26-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 14628,14841,14729 40S ribosomal protein S26-3,40S ribosomal protein S26-2,40S ribosomal protein S26-1 cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2078491;,locus:2061883;,locus:2061928; AT3G56340,AT2G40510,AT2G40590 40S ribosomal protein 40S ribosomal protein S26 (S31),40S ribosomal protein S26 (Fragment),40S ribosomal protein S26 P49216,C7J055,Q0DHB9 RS26_ORYSJ,C7J055_ORYSJ,Q0DHB9_ORYSJ RPS26 Os01g0823300 LOC_Os01g60790 OsJ_03907 P0031D02.12 P0485B12.44,Os03g0816200 OSNPB_030816200,Os05g0477300 Os05g0477300 OsJ_18924 OSNPB_050477300 ENOG411E4SR SUMO6,SUMO2,SUMO3,SUMO8,SUMO7,SUMO4,SUMO1 Q9FKC6,Q9FLP6,Q9FLP5,B3H5R8,Q3E8A8,Q9FKC5,P55852,A0A1P8BAE6,A0A1P8BAF0,F4K3D6 SUMO6_ARATH,SUMO2_ARATH,SUMO3_ARATH,SUMO8_ARATH,SUMO7_ARATH,SUMO4_ARATH,SUMO1_ARATH,A0A1P8BAE6_ARATH,A0A1P8BAF0_ARATH,F4K3D6_ARATH Putative small ubiquitin-related modifier 6 (AtSUMO6),Small ubiquitin-related modifier 2 (AtSUMO2),Small ubiquitin-related modifier 3 (AtSUMO3),Putative small ubiquitin-related modifier 8 (AtSUMO8),Putative small ubiquitin-related modifier 7 (AtSUMO7),Putative small ubiquitin-related modifier 4 (AtSUMO4),Small ubiquitin-related modifier 1 (AtSUMO1) (Ubiquitin-like protein SMT3),Small ubiquitin-like modifier 3,Small ubiquitin-related modifier (SUMO) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17644626}. Late flowering independent of photoperiod-F. Takken-2010 FUNCTION: Ubiquitin-like protein which can be covalently attached to target lysines as a monomer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process (By similarity). {ECO:0000250}.,FUNCTION: Ubiquitin-like protein which can be covalently attached to target lysines as a monomer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Required for the massive protein sumoylation in the nucleus induced by heat shock and controlled by SIZ1. {ECO:0000269|PubMed:17041025, ECO:0000269|PubMed:17644626}.,FUNCTION: Ubiquitin-like protein which can be covalently attached to target lysines as a monomer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Required for the massive protein sumoylation in the nucleus induced by heat shock and controlled by SIZ1. Involved in the regulation of the heat stress transcription factor HSFA2 in acquired thermotolerance. {ECO:0000269|PubMed:17041025, ECO:0000269|PubMed:17644626, ECO:0000269|PubMed:20521085}. MISCELLANEOUS: Stress conditions rapidly and substantially elevates the amount of SUMO1 and SUMO2 conjugates with a concomitant reduction in the amount of free SUMO proteins. The SUMO conjugation system plays an important function in stress protection and/or repair. R-ATH-3065676;R-ATH-3065679;R-ATH-5693565; 13528,11654,12580,11263,10920,13409,10976,12138,12191,13104 Putative small ubiquitin-related modifier 6 (AtSUMO6),Small ubiquitin-related modifier 2 (AtSUMO2),Small ubiquitin-related modifier 3 (AtSUMO3),Putative small ubiquitin-related modifier 8 (AtSUMO8),Putative small ubiquitin-related modifier 7 (AtSUMO7),Putative small ubiquitin-related modifier 4 (AtSUMO4),Small ubiquitin-related modifier 1 (AtSUMO1) (Ubiquitin-like protein SMT3),Small ubiquitin-like modifier 3,Small ubiquitin-related modifier (SUMO) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein tag [GO:0031386]; protein sumoylation [GO:0016925],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein sumoylation [GO:0016925],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein tag [GO:0031386]; heat acclimation [GO:0010286]; negative regulation of sequence-specific DNA binding transcription factor activity [GO:0043433]; protein sumoylation [GO:0016925]; response to heat [GO:0009408],protein sumoylation [GO:0016925],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein tag [GO:0031386]; protein sumoylation [GO:0016925]; response to heat [GO:0009408] locus:2156499;,locus:2161695;,locus:4515103735;,locus:504954849;,locus:2156509;,locus:2116332;,locus:2161675; AT5G48700,AT5G55160,AT5G55170,AT5G55856,AT5G55855,AT5G48710,AT4G26840 Small ubiquitin-related modifier Small ubiquitin-related modifier 1 (OsSUMO1) (Ubiquitin-like protein SMT3),Small ubiquitin-related modifier (SUMO),Os01g0852300 protein,Os01g0918300 protein (Fragment) P55857,Q8RZU9,Q8W0H4,A0A0P0VC54 SUMO1_ORYSJ,Q8RZU9_ORYSJ,Q8W0H4_ORYSJ,A0A0P0VC54_ORYSJ SUMO1 SMT3 SUM1 Os01g0918300 LOC_Os01g68950 OsJ_04555 P0413C03.34-1 P0678F11.1-1,Os01g0918200 OSNPB_010918200 P0413C03.33,Os01g0852300 OSNPB_010852300 P0529E05.5 P0529H11.40,Os01g0918300 OSNPB_010918300 FUNCTION: Ubiquitin-like protein which can be covalently attached to target lysines as a monomer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process (By similarity). {ECO:0000250}. ENOG411E4SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0253800 protein,Os07g0289901 protein Q5NBU2,A0A0P0X4Y5 Q5NBU2_ORYSJ,A0A0P0X4Y5_ORYSJ Os01g0253800 OSNPB_010253800 P0705D01.6,Os07g0289901 OSNPB_070289901 ENOG411E4SP LSM4 F4K4E3 LSM4_ARATH Sm-like protein LSM4 (AtLSM4) (Protein EMBRYO DEFECTIVE 1644) (U6 snRNA-associated Sm-like protein LSM4) DISRUPTION PHENOTYPE: Severe developmental retardation leading to plant death. {ECO:0000269|PubMed:21258002}. Embryo defective; Globular-D. Meinke-2003 FUNCTION: Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-430039;R-ATH-72163; 14323 Sm-like protein LSM4 (AtLSM4) (Protein EMBRYO DEFECTIVE 1644) (U6 snRNA-associated Sm-like protein LSM4) P-body [GO:0000932]; spliceosomal complex [GO:0005681]; spliceosomal tri-snRNP complex [GO:0097526]; U6 snRNP [GO:0005688]; U6 snRNA binding [GO:0017070]; cytoplasmic mRNA processing body assembly [GO:0033962]; nuclear-transcribed mRNA catabolic process [GO:0000956]; spliceosomal complex assembly [GO:0000245]; spliceosomal snRNP assembly [GO:0000387] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2180295; AT5G27720 U6 snRNA-associated Sm-like protein Probable U6 snRNA-associated Sm-like protein LSm4 Q9LGE6 LSM4_ORYSJ Os01g0256900 LOC_Os01g15310 OsJ_01157 P0462H08.1 P0711E10.44 FUNCTION: Binds specifically to the 3'-terminal U-tract of U6 snRNA. {ECO:0000250}. ENOG411E4SQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0703200 protein (Zinc finger, C3HC4 type (RING finger), putative) (Zinc finger, C3HC4 type family protein) Q53NM8 Q53NM8_ORYSJ Os11g0703200 LOC_Os11g47690 OsJ_34847 OSNPB_110703200 ENOG411E4SZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone H3 NA NA NA NA NA NA NA ENOG411E4SX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os12g0432600 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:002-152-A08, full insert sequence) Q2QSD5 Q2QSD5_ORYSJ Os12g0432600 LOC_Os12g24490 Os12g0432600 OSNPB_120432600 ENOG411E4SY RUXF Q9SUM2,Q570S3,F4JPK5 RUXF_ARATH,Q570S3_ARATH,F4JPK5_ARATH Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF),Small nuclear ribonucleoprotein family protein,Small nuclear ribonucleoprotein F FUNCTION: Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome. {ECO:0000250}. R-ATH-72163;R-ATH-72165; 9864,6902,10788 Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF),Small nuclear ribonucleoprotein family protein,Small nuclear ribonucleoprotein F catalytic step 2 spliceosome [GO:0071013]; small nucleolar ribonucleoprotein complex [GO:0005732]; U1 snRNP [GO:0005685]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal snRNP assembly [GO:0000387],catalytic step 2 spliceosome [GO:0071013]; small nucleolar ribonucleoprotein complex [GO:0005732]; U1 snRNP [GO:0005685]; viral nucleocapsid [GO:0019013]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal snRNP assembly [GO:0000387],cytosol [GO:0005829]; nucleolus [GO:0005730]; small nucleolar ribonucleoprotein complex [GO:0005732]; spliceosomal complex [GO:0005681]; viral nucleocapsid [GO:0019013]; RNA binding [GO:0003723]; spliceosomal snRNP assembly [GO:0000387] locus:4010713621;,locus:2128956; AT4G30220,AT2G14285 Small nuclear ribonucleoprotein Os02g0177500 protein (Putative small nuclear ribonucleoprotein polypeptide F),Os11g0657300 protein (Small nuclear ribonucleoprotein F, putative, expressed) (cDNA clone:001-106-G04, full insert sequence) Q6ETN4,Q2R066 Q6ETN4_ORYSJ,Q2R066_ORYSJ Os02g0177500 Os02g0177500 OSNPB_020177500 P0504A05.22,LOC_Os11g43620 Os11g0657300 OsJ_34703 OSNPB_110657300 ENOG411E4SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MiAMP1 NA NA NA NA NA NA NA ENOG411E4SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os03g0604500 protein (Os03g0604566 protein) (Fragment) C7J083 C7J083_ORYSJ Os03g0604500 Os03g0604566 OSNPB_030604566 ENOG411E4SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) NA NA NA NA NA NA NA ENOG411E4SC GRXC4 Q8LFQ6 GRXC4_ARATH Glutaredoxin-C4 (AtGrxC4) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. R-ATH-499943; 14827 Glutaredoxin-C4 (AtGrxC4) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; vacuole [GO:0005773]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2149942; AT5G20500 Glutaredoxin Glutaredoxin-C8 (Glutaredoxin-C4 homolog),Os12g0266000 protein (Fragment),Os06g0659500 protein (Fragment) Q0DAE4,C7J9G4,A0A0P0X007 GRXC8_ORYSJ,C7J9G4_ORYSJ,A0A0P0X007_ORYSJ GRXC8 Os06g0659500 LOC_Os06g44910 B1047G05.35 OSJNBa0051O02.7,Os12g0266000 Os12g0266000 OSNPB_120266000,Os06g0659500 OSNPB_060659500 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E4SA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent Clp protease adaptor protein ClpS Os01g0833600 protein A0A0P0VA12 A0A0P0VA12_ORYSJ Os01g0833600 OSNPB_010833600 ENOG411E4SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein PBP1-like Os06g0683400 protein (Putative EF-hand Ca2+-binding protein CCD1) (cDNA clone:001-125-D12, full insert sequence) (cDNA clone:J013028D20, full insert sequence) (cDNA clone:J033005P22, full insert sequence) Q655G7 Q655G7_ORYSJ Os06g0683400 Os06g0683400 OsJ_22398 OSNPB_060683400 P0009H10.9 ENOG411E4SJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0284300 protein (cDNA clone:001-020-H03, full insert sequence) (cDNA clone:J013096L11, full insert sequence) Q6EPR5 Q6EPR5_ORYSJ Os09g0284300 OJ1190_B07.10 OSJNBa0009H03.27 OSNPB_090284300 ENOG411E4SK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E4SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0248240 protein Q6K3R1 Q6K3R1_ORYSJ Os02g0248240 OSJNBa0011N12.11 OSJNBa0090H18.38 OSNPB_020248240 ENOG411E4SI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0520200 protein Q9FWD0 Q9FWD0_ORYSJ Os10g0520200 LOC_Os10g37580 OSJNBb0018B10.10 OSNPB_100520200 ENOG411E4S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0479000 protein) (cDNA clone:002-135-E01, full insert sequence) Q2R4C7 Q2R4C7_ORYSJ Os11g0479000 LOC_Os11g28940 Os11g0479000 OsJ_33878 OSNPB_110479000 ENOG411E4S7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os05g0476901 protein,Os06g0271600 protein B9FJR3,Q5VQ46 B9FJR3_ORYSJ,Q5VQ46_ORYSJ Os05g0476901 OsJ_18922 OSNPB_050476901,Os06g0271600 Os06g0271600 OSNPB_060271600 P0662B01.13 ENOG411E4S4 Q9ZPX2 Q9ZPX2_ARATH Putative ribosomal protein L6 (Ribosomal protein L6 family protein) 11590 Putative ribosomal protein L6 (Ribosomal protein L6 family protein) ribosome [GO:0005840]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2062200; AT2G18400 ribosomal protein L6 Mitochondrial 60S ribosomal protein L6, putative, expressed (Os03g0725000 protein) (Putative ribosomal protein L6) (cDNA clone:001-025-E08, full insert sequence) (cDNA clone:002-157-C05, full insert sequence) Q6AU10 Q6AU10_ORYSJ OSJNBb0122C16.1 LOC_Os03g51510 Os03g0725000 OSNPB_030725000 ENOG411E4S5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX IAA family Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14),Auxin-responsive protein Q7Y1H8,Q10C19 IAA14_ORYSJ,Q10C19_ORYSJ IAA14 Os03g0797800 LOC_Os03g58350 OSJNBa0094F01.9,LOC_Os03g58350 Os03g0797800 OSNPB_030797800 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. ENOG411E4S2 RPS27A,RPS27B,RPS27D O64650,Q9M2F1,Q8L953,B3H5X2 RS271_ARATH,RS272_ARATH,RS273_ARATH,B3H5X2_ARATH 40S ribosomal protein S27-1,40S ribosomal protein S27-2,40S ribosomal protein S27-3,40S ribosomal protein S27 Sensitive to DNA damaging agents -J. Paszkowski-1999 FUNCTION: May be involved in the elimination of damaged mRNA after UV irradiation. {ECO:0000269|PubMed:9889204}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 9405,9600,9490,9592 40S ribosomal protein S27-1,40S ribosomal protein S27-2,40S ribosomal protein S27-3,40S ribosomal protein S27 cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cell wall [GO:0005618]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; ribosome [GO:0005840]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:2050756;,locus:2098821;,locus:2152773;,locus:4515103291; AT2G45710,AT3G61110,AT5G47930,AT3G61111 40S ribosomal protein S27 40S ribosomal protein S27,40S ribosomal protein S27 (Fragment) Q6K5R5,Q7XVZ0,A0A0P0WA00 Q6K5R5_ORYSJ,Q7XVZ0_ORYSJ,A0A0P0WA00_ORYSJ Os02g0478700 Os02g0478700 OsJ_06730 OSNPB_020478700 P0527E02.36,Os04g0346100 Os04g0346100 OsJ_14350 OSJNBa0020I02.1 OSNPB_040346100,Os04g0399000 OSNPB_040399000 ENOG411E4S3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0523600 protein (Fragment) Q0J4F1 Q0J4F1_ORYSJ Os08g0523600 Os08g0523600 OSNPB_080523600 ENOG411E4S0 O64632 O64632_ARATH Coiled-coil protein (Expressed protein) (Uncharacterized protein At2g45520) 23435 Coiled-coil protein (Expressed protein) (Uncharacterized protein At2g45520) locus:2043649; AT2G45520 NA Os06g0129800 protein A0A0P0WS94 A0A0P0WS94_ORYSJ Os06g0129800 OSNPB_060129800 ENOG411E4S8 Q9CAJ1 Q9CAJ1_ARATH Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At1g72790) (Uncharacterized protein F28P22.2) 62615 Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At1g72790) (Uncharacterized protein F28P22.2) cytosol [GO:0005829]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886] locus:2030190; AT1G72790 NA NA NA NA NA NA NA NA ENOG411E4S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-dependent phospholipid binding Elicitor-responsive protein 1 (OsERG1) (17 kDa phloem protein) (Fungal elicitor immediate early-responsive gene 1 protein) (FIERG1) (RPP17) Q0JHU5 ERG1_ORYSJ ERG1 Os01g0841700 LOC_Os01g62430 OsJ_04036 P0406G08 FUNCTION: May play a role in plant defense signaling (Probable). Isoform 2 binds to phospholipids in a Ca(2+)-dependent manner in response to pathogen elicitors (PubMed:14529272). {ECO:0000269|PubMed:14529272, ECO:0000305|PubMed:14529272}. ENOG411DZMQ EXPA5 Q38864 EXPA5_ARATH Expansin-A5 (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) Short hypocotyl and roots; Small rosette-S. Kim-2010 FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 27611 Expansin-A5 (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664]; primary root development [GO:0080022]; unidimensional cell growth [GO:0009826] locus:2087027; AT3G29030 Pollen allergen NA NA NA NA NA NA NA ENOG411DZMZ Q9LW60 P2C44_ARATH Putative protein phosphatase 2C-like protein 44 (AtPP2C44) 29612 Putative protein phosphatase 2C-like protein 44 (AtPP2C44) protein serine/threonine phosphatase activity [GO:0004722] locus:2090955; AT3G23360 Protein phosphatase 2C-like protein NA NA NA NA NA NA NA ENOG411DZMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain (By similarity) Acyl-[acyl-carrier-protein] desaturase 7, chloroplastic (EC 1.14.19.-),Os03g0741000 protein,Os06g0503800 protein Q6Z1I5,A0A0P0W3E5,A0A0P0WXE7 STAD7_ORYSJ,A0A0P0W3E5_ORYSJ,A0A0P0WXE7_ORYSJ Os08g0200100 LOC_Os08g10010 OsJ_26370 OSJNBb0094P23.43 P0556A11.14,Os03g0741000 OSNPB_030741000,Os06g0503800 OSNPB_060503800 FUNCTION: Introduces a cis double bond in the acyl chain of an acyl-[acyl-carrier protein]. {ECO:0000305}. ENOG411ECAC Q9CAS2 Q9CAS2_ARATH Actin cross-linking protein (DUF569) (At1g69890/T17F3_8) (Uncharacterized protein T17F3.8) 31216 Actin cross-linking protein (DUF569) (At1g69890/T17F3_8) (Uncharacterized protein T17F3.8) locus:2196774; AT1G69890 Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411ECAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium:sulfate symporter transmembrane region Os09g0469950 protein A0A0N7KQY9 A0A0N7KQY9_ORYSJ Os09g0469950 OSNPB_090469950 ENOG411EJFT Q9ZVA2,Q9ZVA1 EP1L2_ARATH,EP1L1_ARATH EP1-like glycoprotein 2 (Curculin-like (Mannose-binding) lectin family protein),EP1-like glycoprotein 1 DISRUPTION PHENOTYPE: Defect in both hypocotyl and cotyledon photoresponsiveness during deetiolation. {ECO:0000269|PubMed:16891401}. 50343,50594 EP1-like glycoprotein 2 (Curculin-like (Mannose-binding) lectin family protein),EP1-like glycoprotein 1 apoplast [GO:0048046]; cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; carbohydrate binding [GO:0030246]; response to cytokinin [GO:0009735],apoplast [GO:0048046]; cell wall [GO:0005618]; carbohydrate binding [GO:0030246] locus:2037548;,locus:2037563; AT1G78830,AT1G78820 D-mannose binding lectin NA NA NA NA NA NA NA ENOG411EJFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Tesmin TSO1-like CXC domain containing protein NA NA NA NA NA NA NA ENOG411EJFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase sugar-binding region containing DXD motif NA NA NA NA NA NA NA ENOG411E0Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Os10g0529800 protein (Fragment),Glutathione S-transferase GSTU6, putative, expressed (Os10g0530200 protein) (Putative glutathione S-transferase) (cDNA clone:002-121-B04, full insert sequence) Q0IW70,Q8S715 Q0IW70_ORYSJ,Q8S715_ORYSJ Os10g0529800 OSNPB_100529800,Os10g0530200 LOC_Os10g38670 Os10g0530200 OsJ_32241 OSJNBa0034L04.12 OSJNBb0038A07.27 OSNPB_100530200 ENOG411E0Z0 CXE20 Q9LVB8 CXE20_ARATH Probable carboxylesterase 120 (AtCXE20) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT5G62180-MONOMER; 3.1.1.1 36182 Probable carboxylesterase 120 (AtCXE20) (EC 3.1.1.1) hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in roots, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2174033; AT5G62180 Carboxylesterase NA NA NA NA NA NA NA ENOG411E0Z3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E0Z2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os06g0204100 protein (Fragment),Os03g0650200 protein A0A0N7KLQ6,A0A0P0W1B4 A0A0N7KLQ6_ORYSJ,A0A0P0W1B4_ORYSJ Os06g0204100 OSNPB_060204100,Os03g0650200 OSNPB_030650200 ENOG411E0Z5 GBF4,MRH10.19 P42777,Q9FNB9 GBF4_ARATH,Q9FNB9_ARATH G-box-binding factor 4 (bZIP transcription factor 40) (AtbZIP40),Basic leucine zipper transcription factor (Basic-leucine zipper (BZIP) transcription factor family protein) (Similarity to G-box binding factor) (Uncharacterized protein At5g44080) FUNCTION: Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. 30586,34951 G-box-binding factor 4 (bZIP transcription factor 40) (AtbZIP40),Basic leucine zipper transcription factor (Basic-leucine zipper (BZIP) transcription factor family protein) (Similarity to G-box binding factor) (Uncharacterized protein At5g44080) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2024224;,locus:2172507; AT1G03970,AT5G44080 Transcription factor bZIP transcription factor 12 (OsBZIP12) (Abscisic acid responsive elements-binding factor 1) (ABA responsive element binding factor 1) (ABRE-binding factor 1) (OsABF1) Q0JHF1 BZP12_ORYSJ BZIP12 ABF1 OSE2 Os01g0867300 LOC_Os01g64730 P0677H08.2-1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased sensitivity to salt and drought stresses. {ECO:0000269|PubMed:20039193}. FUNCTION: Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. MISCELLANEOUS: Plants overexpressing BZIP12 exhibit increased sensitivity to D-allose-induced growth inhibition. {ECO:0000269|PubMed:23397192}. ENOG411E0Z4 Q9SU93 Q9SU93_ARATH Nucleophosmin (Uncharacterized protein AT4g29520) (Uncharacterized protein T16L4.30) 34364 Nucleophosmin (Uncharacterized protein AT4g29520) (Uncharacterized protein T16L4.30) endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886] locus:2134348; AT4G29520 NA Os06g0150400 protein Q5VML4 Q5VML4_ORYSJ Os06g0150400 Os06g0150400 OSNPB_060150400 P0529C07.1 P0710H01.13 ENOG411E0Z7 A0A1P8AMN8,Q9CAB4,A0A1P8AMK4,A0A1P8AML1,A0A1P8AMN9,A0A1P8AMK7,F4I6U7,F4I6U8 A0A1P8AMN8_ARATH,Q9CAB4_ARATH,A0A1P8AMK4_ARATH,A0A1P8AML1_ARATH,A0A1P8AMN9_ARATH,A0A1P8AMK7_ARATH,F4I6U7_ARATH,F4I6U8_ARATH Cyclin-like protein,Cyclin-like protein (Uncharacterized protein F5A18.20) 64464,97082,102249,69376,62614,69631,104942,98817 Cyclin-like protein,Cyclin-like protein (Uncharacterized protein F5A18.20) locus:2026805; AT1G70620 NA Os04g0661700 protein A0A0P0WFW3 A0A0P0WFW3_ORYSJ Os04g0661700 OSNPB_040661700 ENOG411E0Z6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411E0Z9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Nse4 Os08g0510900 protein Q7EXY7 Q7EXY7_ORYSJ Os08g0510900 Os08g0510900 OSJNBa0016N23.127 OSNPB_080510900 ENOG411E0Z8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL13 (Protein YELLOW STRIPE LIKE 13) (OsYSL13),Os04g0524500 protein (Fragment) Q7XKF4,A0A0P0WCZ5 YSL13_ORYSJ,A0A0P0WCZ5_ORYSJ YSL13 Os04g0524500 LOC_Os04g44300 OsJ_014867 OSJNBb0065J09.15,Os04g0524500 OSNPB_040524500 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411E0ZA Q9FW48,Q9FW47,O48705,Q4PT10,A0A1P8AWX3,F4HR92,F4HR88 Q9FW48_ARATH,Q9FW47_ARATH,O48705_ARATH,Q4PT10_ARATH,A0A1P8AWX3_ARATH,F4HR92_ARATH,F4HR88_ARATH Leucine-rich repeat (LRR) family protein (Uncharacterized protein T1E4.2),Leucine-rich repeat (LRR) family protein (Uncharacterized protein T1E4.3),Leucine-rich repeat (LRR) family protein (Putative disease resistance protein),Leucine-rich repeat (LRR) family protein (Leucine-rich repeat family protein),Leucine-rich repeat (LRR) family protein 52471,55578,52429,50429,55838,49968,51742 Leucine-rich repeat (LRR) family protein (Uncharacterized protein T1E4.2),Leucine-rich repeat (LRR) family protein (Uncharacterized protein T1E4.3),Leucine-rich repeat (LRR) family protein (Putative disease resistance protein),Leucine-rich repeat (LRR) family protein (Leucine-rich repeat family protein),Leucine-rich repeat (LRR) family protein cell wall [GO:0005618]; membrane [GO:0016020]; plant-type cell wall [GO:0009505],cell wall [GO:0005618]; chloroplast [GO:0009507]; plant-type cell wall [GO:0009505]; response to karrikin [GO:0080167] locus:2197586;,locus:2066306;,locus:2012633;,locus:6530298153;,locus:2197563; AT1G33600,AT2G26380,AT1G33670,AT1G33612,AT1G33590 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411E0ZC GES Q93YV0 GES_ARATH (E,E)-geranyllinalool synthase (EC 4.2.3.144) (Terpenoid synthase 4) (AtTPS04) DISRUPTION PHENOTYPE: No formation of (E,E)-geranyllinalool and TMMTT detected. {ECO:0000269|PubMed:18398052, ECO:0000269|PubMed:18842097}. These mutants fail to accumulate (EE)-geranyllinalool and 4812-trimethyltrideca-13711-tetraene (TMTT) in response to a treatment with the octadecanoid mimic coronalon. Low terpene levels; No other phenotypes mentioned-D. Tholl-2008 FUNCTION: Involved in diterpene (C20) biosynthesis. Catalyzes the conversion of geranylgeranyl diphosphate to (E,E)-geranyllinalool, the precursor of the insect-induced volatile C16-homoterpene TMTT. {ECO:0000269|PubMed:18398052, ECO:0000269|PubMed:18842097}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT1G61120-MONOMER;MetaCyc:AT1G61120-MONOMER; 4.2.3.144; 4.2.3.144 101895 (E,E)-geranyllinalool synthase (EC 4.2.3.144) (Terpenoid synthase 4) (AtTPS04) cytoplasm [GO:0005737]; (E,E)-geranyllinalool synthase activity [GO:0080013]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; diterpenoid biosynthetic process [GO:0016102]; response to bacterium [GO:0009617]; response to herbivore [GO:0080027]; response to jasmonic acid [GO:0009753]; response to singlet oxygen [GO:0000304]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:18398052}. locus:2008485; AT1G61120 synthase NA NA NA NA NA NA NA ENOG411E0ZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase FERONIA-like NA NA NA NA NA NA NA ENOG411E0ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q942C5,Q65XC9 Q942C5_ORYSJ,Q65XC9_ORYSJ Os01g0734600 Os01g0734600 B1060H01.20 OSNPB_010734600,Os05g0527900 OJ1187_E11.10 OSNPB_050527900 ENOG411E0ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Growth arrest-specific 8 NA NA NA NA NA NA NA ENOG411E0ZG T5N23_120 Q9M1S4,F4JE18 Q9M1S4_ARATH,F4JE18_ARATH Dentin sialophosphoprotein-like protein (Uncharacterized protein T5N23_120),Dentin sialophosphoprotein-like protein 86134,82754 Dentin sialophosphoprotein-like protein (Uncharacterized protein T5N23_120),Dentin sialophosphoprotein-like protein cytosol [GO:0005829]; nucleic acid binding [GO:0003676],nucleic acid binding [GO:0003676] locus:2102425; AT3G54760 PWWP domain Os05g0463400 protein (Fragment),Os05g0463600 protein (Fragment),Os05g0463500 protein (Fragment) A0A0P0WNF2,A0A0N7KKX5,A0A0P0WNI6,A0A0P0WNI4 A0A0P0WNF2_ORYSJ,A0A0N7KKX5_ORYSJ,A0A0P0WNI6_ORYSJ,A0A0P0WNI4_ORYSJ Os05g0463400 OSNPB_050463400,Os05g0463600 OSNPB_050463600,Os05g0463500 OSNPB_050463500 ENOG411E0ZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein phosphatase 2C Probable protein phosphatase 2C 65 (OsPP2C65) (EC 3.1.3.16),Os07g0646100 protein Q8H2T0,A0A0P0X9J7 P2C65_ORYSJ,A0A0P0X9J7_ORYSJ Os07g0646100 LOC_Os07g45170 P0503D09.114,Os07g0646100 OSNPB_070646100 ENOG411E0ZI Q9SU37,Q9SXE5 Q9SU37_ARATH,Q9SXE5_ARATH At4g12450 (Uncharacterized protein At4g12450) (Zinc finger (C2H2 type) family protein),Sulfated surface-like glycoprotein (T3P18.8) (Uncharacterized protein At1g62520) 29982,30815 At4g12450 (Uncharacterized protein At4g12450) (Zinc finger (C2H2 type) family protein),Sulfated surface-like glycoprotein (T3P18.8) (Uncharacterized protein At1g62520) locus:2135565;,locus:2203896; AT4G12450,AT1G62520 zinc finger protein Os02g0661600 protein A0A0N7KFT9 A0A0N7KFT9_ORYSJ Os02g0661600 OSNPB_020661600 ENOG411E0ZH Q9LP11,Q9M0W1,F4JGF3 AATP1_ARATH,Q9M0W1_ARATH,F4JGF3_ARATH AAA-ATPase At1g43910 (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein AT4g05340),P-loop nucleoside triphosphate hydrolase superfamily protein 3.6.1.3 54238,11189,53095 AAA-ATPase At1g43910 (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein AT4g05340),P-loop nucleoside triphosphate hydrolase superfamily protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; cellular response to potassium ion starvation [GO:0051365]; response to abscisic acid [GO:0009737],ATP binding [GO:0005524]; hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in developing shoots. {ECO:0000269|PubMed:16648215}. locus:2037186;,locus:2115914;,locus:2115954; AT1G43910,AT4G05340,AT4G05380 Holliday junction DNA helicase ruvB N-terminus NA NA NA NA NA NA NA ENOG411E0ZK FSD1,FSD2 P21276,Q9LU64,A0A1P8BBM1,A0A1P8BBK0,A0A1P8BBJ5,F4JRV2,F4JHF1 SODF1_ARATH,SODF2_ARATH,A0A1P8BBM1_ARATH,A0A1P8BBK0_ARATH,A0A1P8BBJ5_ARATH,F4JRV2_ARATH,F4JHF1_ARATH Superoxide dismutase [Fe] 1, chloroplastic (EC 1.15.1.1) (Protein FE SUPEROXIDE DISMUTASE 1),Superoxide dismutase [Fe] 2, chloroplastic (EC 1.15.1.1) (Protein ALBINO OR PALE GREEN 8) (Protein FE SUPEROXIDE DISMUTASE 2),Superoxide dismutase (EC 1.15.1.1),Fe superoxide dismutase 2,Fe superoxide dismutase DISRUPTION PHENOTYPE: Pale green phenotype. Abnormal plastids, highly vacuolated and without internal membrane structures like thylakoids. {ECO:0000269|PubMed:18996978}. Pale green seedlings-K. Shinozaki-2008 FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.,FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). Plays important role in chloroplast development, particularly in the maintenance of thylakoids membranes. Seems to act as a heterodimer with FSD3. {ECO:0000250, ECO:0000269|PubMed:18996978}.,FUNCTION: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. {ECO:0000256|RuleBase:RU000414}. 1.15.1.1 23791,34664,25813,27226,33595,21098,11094 Superoxide dismutase [Fe] 1, chloroplastic (EC 1.15.1.1) (Protein FE SUPEROXIDE DISMUTASE 1),Superoxide dismutase [Fe] 2, chloroplastic (EC 1.15.1.1) (Protein ALBINO OR PALE GREEN 8) (Protein FE SUPEROXIDE DISMUTASE 2),Superoxide dismutase (EC 1.15.1.1),Fe superoxide dismutase 2,Fe superoxide dismutase chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; thylakoid [GO:0009579]; copper ion binding [GO:0005507]; protein domain specific binding [GO:0019904]; superoxide dismutase activity [GO:0004784]; circadian rhythm [GO:0007623]; response to cadmium ion [GO:0046686]; response to copper ion [GO:0046688]; response to light intensity [GO:0009642]; response to oxidative stress [GO:0006979]; response to ozone [GO:0010193],chloroplast [GO:0009507]; chloroplast nucleoid [GO:0042644]; chloroplast thylakoid [GO:0009534]; nucleoid [GO:0009295]; thylakoid [GO:0009579]; metal ion binding [GO:0046872]; superoxide dismutase activity [GO:0004784]; oxidation-reduction process [GO:0055114]; response to UV [GO:0009411],metal ion binding [GO:0046872]; superoxide dismutase activity [GO:0004784] locus:2117273;,locus:2176167;,locus:5019474797; AT4G25100,AT5G51100,AT4G00651 Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) Superoxide dismutase [Fe] 1, chloroplastic (EC 1.15.1.1),Os06g0115400 protein Q5VRL3,A0A0P0WRV8 SODF1_ORYSJ,A0A0P0WRV8_ORYSJ Os06g0115400 LOC_Os06g02500 OsJ_19901 OSJNBa0019F11.15-1 P0541H01.37-1,Os06g0115400 OSNPB_060115400 FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. {ECO:0000250}. ENOG411E0ZJ sgp1,SGP1 Q9SUJ6,A2RVU6,A0A1P8BF33 Q9SUJ6_ARATH,A2RVU6_ARATH,A0A1P8BF33_ARATH Ras-related small GTP-binding family protein (SGP1 monomeric G-protein),At5g54840 (Ras-related small GTP-binding family protein),Ras-related small GTP-binding family protein 32831,24457,26322 Ras-related small GTP-binding family protein (SGP1 monomeric G-protein),At5g54840 (Ras-related small GTP-binding family protein),Ras-related small GTP-binding family protein GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell cycle [GO:0007049],GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2160125; AT5G54840 septum-promoting GTP-binding protein Os07g0522900 protein (Fragment) Q0D5Z4 Q0D5Z4_ORYSJ Os07g0522900 Os07g0522900 OSNPB_070522900 ENOG411E0ZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0ZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger C3HC4 type domain containing protein expressed Os08g0539300 protein (Putative VIP2 protein),Os09g0511500 protein (cDNA clone:J023148H24, full insert sequence) Q69UA1,Q0J0G4 Q69UA1_ORYSJ,Q0J0G4_ORYSJ P0666G10.111 Os08g0539300 OsJ_28112 OSNPB_080539300,Os09g0511500 Os09g0511500 OSNPB_090511500 ENOG411E0ZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os06g0602500 protein (Putative Ser/Thr protein kinase) (cDNA clone:J023047K02, full insert sequence),Os06g0575400 protein (Putative receptor-like protein kinase) (cDNA clone:J033071M18, full insert sequence),Os06g0574550 protein (Fragment),Os06g0575000 protein Q69XK0,Q5Z601,A0A0P0WXZ2,A0A0P0WY30 Q69XK0_ORYSJ,Q5Z601_ORYSJ,A0A0P0WXZ2_ORYSJ,A0A0P0WY30_ORYSJ Os06g0602500 OsJ_21892 OSNPB_060602500 P0486H12.20,Os06g0575400 Os06g0575400 OsJ_21778 OSNPB_060575400 P0612G07.14,Os06g0574550 OSNPB_060574550,Os06g0575000 OSNPB_060575000 ENOG411E0ZP UND Q9SV77,Q8S8N7,Q9SZV6,Q9SZV7,Q3EAA9 UND_ARATH,Q8S8N7_ARATH,Q9SZV6_ARATH,Q9SZV7_ARATH,Q3EAA9_ARATH Aspartyl protease UND (EC 3.4.23.-) (Protein UNDEAD),Eukaryotic aspartyl protease family protein (Predicted protein),Aspartyl protease family protein (Eukaryotic aspartyl protease family protein) (Uncharacterized protein AT4g30030) (Uncharacterized protein F6G3.60),Aspartyl protease family protein (Eukaryotic aspartyl protease family protein) (Uncharacterized protein AT4g30040) (Uncharacterized protein F6G3.70),Eukaryotic aspartyl protease family protein DISRUPTION PHENOTYPE: Premature apoptosis-like programmed cell death (PCD) in tapetum and pollen from developing anthers, leading to collapsed pollen grains. {ECO:0000269|PubMed:21673079}. FUNCTION: Probable aspartic protease activated by the transcription factor MYB80. May participate in the regulation of the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:21673079}. MISCELLANEOUS: Plants silencing UND exhibit partial male sterility with reduced silique elongation and seed set. Premature apoptosis-like programmed cell death (PCD) in tapetum from developing anthers, leading to collapsed pollen grains. {ECO:0000269|PubMed:21673079}. 3.4.23.- 43308,51352,47233,47358,18114 Aspartyl protease UND (EC 3.4.23.-) (Protein UNDEAD),Eukaryotic aspartyl protease family protein (Predicted protein),Aspartyl protease family protein (Eukaryotic aspartyl protease family protein) (Uncharacterized protein AT4g30030) (Uncharacterized protein F6G3.60),Aspartyl protease family protein (Eukaryotic aspartyl protease family protein) (Uncharacterized protein AT4g30040) (Uncharacterized protein F6G3.70),Eukaryotic aspartyl protease family protein aspartic-type endopeptidase activity [GO:0004190]; pollen development [GO:0009555]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; regulation of programmed cell death [GO:0043067],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190] DEVELOPMENTAL STAGE: During anther development, expressed from stage 6 to stage 9 in tapetal cells and developing microspores. {ECO:0000269|PubMed:21673079}. locus:2123196;,locus:505006268;,locus:2126495;,locus:2126505;,locus:504955287; AT4G12920,AT2G23945,AT4G30030,AT4G30040,AT4G04985 aspartyl protease family protein NA NA NA NA NA NA NA ENOG411E0ZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCAMP family Secretory carrier-associated membrane protein (Secretory carrier membrane protein) (Fragment) A0A0P0XCJ1 A0A0P0XCJ1_ORYSJ Os08g0161750 OSNPB_080161750 FUNCTION: Probably involved in membrane trafficking. {ECO:0000256|RuleBase:RU363122}. ENOG411E0ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cullin protein neddylation domain Os08g0170900 protein (Putative cullin 3B),OSJNBa0033G05.2 protein (OSJNBa0063C18.16 protein) (Os04g0643000 protein),Os08g0170900 protein Q6YYL1,Q7XJX7,A0A0P0XCF2 Q6YYL1_ORYSJ,Q7XJX7_ORYSJ,A0A0P0XCF2_ORYSJ Os08g0170900 Os08g0170900 OJ1590_E05.14 OsJ_26204 OSNPB_080170900 P0458D06.43,Os04g0643000 Os04g0643000 OsJ_16378 OSJNBa0033G05.2 OSJNBa0063C18.16 OSNPB_040643000,Os08g0170900 OSNPB_080170900 ENOG411E0ZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein NA NA NA NA NA NA NA ENOG411E0ZT Q6E295,Q6E297,A0A1P8AQL1,A0A1P8AQL0,A0A1P8AQT0 Q6E295_ARATH,Q6E297_ARATH,A0A1P8AQL1_ARATH,A0A1P8AQL0_ARATH,A0A1P8AQT0_ARATH Methyltransferase 23299,32333,24499,21753,17558 Methyltransferase methyltransferase activity [GO:0008168]; rRNA processing [GO:0006364],rRNA (uridine-N3-)-methyltransferase activity [GO:0070042]; rRNA base methylation [GO:0070475] locus:2031025; AT1G50000 ribosomal RNA small subunit methyltransferase Os03g0729700 protein (Fragment) Q0DNW7 Q0DNW7_ORYSJ Os03g0729700 Os03g0729700 OSNPB_030729700 ENOG411E0ZW Q944Q6 Q944Q6_ARATH Expressed protein (RING/U-box superfamily protein) 37438 Expressed protein (RING/U-box superfamily protein) integral component of membrane [GO:0016021]; response to abscisic acid [GO:0009737] locus:505006245; AT2G14835 zinc finger Os10g0346200 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:002-108-E10, full insert sequence) Q339K7 Q339K7_ORYSJ Os10g0346200 LOC_Os10g20600 Os10g0346200 OsJ_31177 OSNPB_100346200 ENOG411E0ZV Q9FVV8,Q9LIR8 FB87_ARATH,FBK67_ARATH Putative F-box protein At1g71320,F-box/kelch-repeat protein At3g23880 46198,41122 Putative F-box protein At1g71320,F-box/kelch-repeat protein At3g23880 nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2032308;,locus:2076196; AT1G71320,AT3G23880 F-box kelch-repeat protein NA NA NA NA NA NA NA ENOG411E0ZY T8M16_160 Q9LES5 Q9LES5_ARATH At3g56830 (Uncharacterized protein At3g56830) (Uncharacterized protein T8M16_160) (YCF20-like protein (DUF565)) WT phenotype morphologically and with respect to nonphotochemical quenching. 20841 At3g56830 (Uncharacterized protein At3g56830) (Uncharacterized protein T8M16_160) (YCF20-like protein (DUF565)) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2103645; AT3G56830 Protein of unknown function (DUF565) Os03g0852600 protein (Fragment) Q0DLP9 Q0DLP9_ORYSJ Os03g0852600 OSNPB_030852600 ENOG411E0ZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os02g0555900 protein A0A0P0VKD8 A0A0P0VKD8_ORYSJ Os02g0555900 OSNPB_020555900 ENOG411E0ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Squamosa promoter-binding-like protein Squamosa promoter-binding-like protein 7 Q7XT42 SPL7_ORYSJ SPL7 Os04g0551500 LOC_Os04g46580 OSJNBa0010H02.3 OSJNBb0034G17.20 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411E669 LTP8 Q9ZPW9 NLTP8_ARATH Non-specific lipid-transfer protein 8 (LTP 8) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 11789 Non-specific lipid-transfer protein 8 (LTP 8) membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2062116; AT2G18370 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E668 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0661700 protein (cDNA clone:001-101-E10, full insert sequence) Q8H2U6 Q8H2U6_ORYSJ P0453E03.109 Os07g0661700 OsJ_25459 OSNPB_070661700 ENOG411E663 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal peptidase complex subunit Os12g0438900 protein (Fragment) A0A0P0Y9Q3 A0A0P0Y9Q3_ORYSJ Os12g0438900 OSNPB_120438900 ENOG411E662 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Translation initiation factor IF-1 Translation initiation factor IF-1, chloroplastic P0C380 IF1C_ORYSJ infA LOC_Osp1g00690 Nip104 FUNCTION: One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. {ECO:0000255|HAMAP-Rule:MF_00075}. ENOG411E661 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Monothiol glutaredoxin-S2,Glutaredoxin-C7 Q5SMY5,Q0DK35 GRXS2_ORYSJ,GRXC7_ORYSJ GRXS2 Os01g0194600 LOC_Os01g09830 OsJ_00727 P0001B06.21 P0498B01.7,GRXC7 Os05g0198200 LOC_Os05g10930 OSJNBa0007C23.5 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}.,FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E660 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0510200 protein (cDNA clone:001-101-B06, full insert sequence) Q942H1 Q942H1_ORYSJ Os01g0510200 OsJ_01966 OSNPB_010510200 P0455H03.46 P0520B06.9 ENOG411E667 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin-regulated protein NA NA NA NA NA NA NA ENOG411E666 Q8RW93 LBP65_ARATH Putative lipid-binding protein At4g00165 13338 Putative lipid-binding protein At4g00165 extracellular region [GO:0005576] locus:504955467; AT4G00165 lipid-binding protein NA NA NA NA NA NA NA ENOG411E665 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sir2 family NA NA NA NA NA NA NA ENOG411E664 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0205150 protein (Fragment) A0A0P0VUH5 A0A0P0VUH5_ORYSJ Os03g0205150 OSNPB_030205150 ENOG411E66Z Q94B54 Q94B54_ARATH Uncharacterized protein 12770 Uncharacterized protein mitochondrion [GO:0005739] locus:2034387; AT1G20430 NA Os06g0213900 protein (cDNA clone:002-119-B06, full insert sequence) Q69Y26 Q69Y26_ORYSJ Os06g0213900 OSNPB_060213900 P0537F07.3 P0701E03.42 ENOG411E66Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Anaphase promoting complex subunit 1 NA NA NA NA NA NA NA ENOG411E66X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rho termination factor N-terminal domain Os01g0205300 protein A0A0P0UZF5 A0A0P0UZF5_ORYSJ Os01g0205300 OSNPB_010205300 ENOG411E66S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0426900 protein (Unknow protein) (cDNA clone:J033030B15, full insert sequence) Q75HR0 Q75HR0_ORYSJ Os05g0426900 OsJ_18615 OSJNBa0044P19.13 OSNPB_050426900 P0636F09.7 ENOG411E66R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Os02g0629000 protein (cDNA clone:001-103-G03, full insert sequence) Q6K219 Q6K219_ORYSJ Os02g0629000 Os02g0629000 B1469H02.18 OSNPB_020629000 ENOG411E66P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os09g0298332 protein A0A0P0XKK4 A0A0P0XKK4_ORYSJ Os09g0298332 OSNPB_090298332 ENOG411E66V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os01g0249700 protein (Fragment) A0A0P0V0T5 A0A0P0V0T5_ORYSJ Os01g0249700 OSNPB_010249700 ENOG411E66U RALF1 Q9SRY3 RLF1_ARATH Protein RALF-like 1 (Rapid alkalinization factor 1) (AtRALF1) DISRUPTION PHENOTYPE: Longer roots. {ECO:0000269|PubMed:24458638}. FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length). Suppresses cell elongation of the primary root by activating the cell surface receptor FER and triggering phosphorylation of AHA2 and subsequent extracellular alkalinization. {ECO:0000269|PubMed:18494498, ECO:0000269|PubMed:18775699, ECO:0000269|PubMed:24458638}. 12967 Protein RALF-like 1 (Rapid alkalinization factor 1) (AtRALF1) apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267]; negative regulation of cell growth [GO:0030308]; root development [GO:0048364] DEVELOPMENTAL STAGE: First detected in the root hair zone of seedlings, mostly in the vascular bundles, cortex, and endodermis. Later observed in hypocotyls and veins of cotyledons. {ECO:0000269|PubMed:18494498}. TISSUE SPECIFICITY: Expressed in roots and stems. {ECO:0000269|PubMed:18494498}. locus:2024730; AT1G02900 Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411E66K GASA5 Q84J95 GASA5_ARATH Gibberellin-regulated protein 5 (GAST1 protein homolog 5) DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:19190987}. Increased stem growth rate; Early flowering independent of photoperiod-X. Wang-2009 FUNCTION: Gibberellin-regulated protein that acts as a negative regulator of gibberellin-induced flowering and stem growth. May inhibit flowering and inflorescence growth via a pathway involving GAI and by enhancing FLC expression and repressing FT and LFY. Acts as a negative regulator in thermotolerance by resogulating both salicylic acid (SA) signaling and heat shock-protein accumulation. {ECO:0000269|PubMed:19190987, ECO:0000269|PubMed:21835493}. 10845 Gibberellin-regulated protein 5 (GAST1 protein homolog 5) cell wall [GO:0005618]; plasmodesma [GO:0009506]; proteinaceous extracellular matrix [GO:0005578]; gibberellic acid mediated signaling pathway [GO:0009740]; heat acclimation [GO:0010286]; response to heat [GO:0009408]; response to salicylic acid [GO:0009751] TISSUE SPECIFICITY: Expressed in roots, root hairs, vasculature of cotyledons and hypocotyls, shoot apex, leaf veins, stems, flower receptacles, pollen, filaments, anthers and siliques. {ECO:0000269|PubMed:19190987}. locus:505006327; AT3G02885 Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411E66I HMGB14 O64702 HMG14_ARATH High mobility group B protein 14 (Nucleosome/chromatin assembly factor group D 14) 17499 High mobility group B protein 14 (Nucleosome/chromatin assembly factor group D 14) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2040834; AT2G34450 high mobility group HMG protein-like (Os01g0666200 protein) (cDNA clone:002-115-A10, full insert sequence) Q5QLQ9 Q5QLQ9_ORYSJ Os01g0666200 Os01g0666200 OSJNBb0063G05.4 OSNPB_010666200 ENOG411E66H O64580,A0A1P8B2T9 O64580_ARATH,A0A1P8B2T9_ARATH At2g19460 (DUF3511 domain protein (DUF3511)) (Expressed protein) (Uncharacterized protein At2g19460),DUF3511 domain protein (DUF3511) 13425,19531 At2g19460 (DUF3511 domain protein (DUF3511)) (Expressed protein) (Uncharacterized protein At2g19460),DUF3511 domain protein (DUF3511) locus:2047700; AT2G19460 Domain of unknown function (DUF3511) Os06g0564000 protein (Os06g0564100 protein) (cDNA clone:002-129-F01, full insert sequence) Q5Z8Z1 Q5Z8Z1_ORYSJ Os06g0564100 Os06g0564000 OsJ_21714 OSNPB_060564100 P0656E03.37 ENOG411E66M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein Expressed protein (Os12g0460000 protein) (Os12g0460100 protein) (cDNA clone:J013132H03, full insert sequence) Q2QRI7 Q2QRI7_ORYSJ Os12g0460100 LOC_Os12g27440 Os12g0460000 OSNPB_120460100 ENOG411E66C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif OSJNBa0070O11.3 protein (Os04g0645200 protein) (cDNA clone:J013096O17, full insert sequence) Q7FB34 Q7FB34_ORYSJ Os04g0645200 Os04g0645200 OsJ_16399 OSJNBa0070O11.3 OSNPB_040645200 ENOG411E66B Q8GY44 Q8GY44_ARATH At2g15910 (CSL zinc finger domain-containing protein) 9427 At2g15910 (CSL zinc finger domain-containing protein) metal ion binding [GO:0046872] AT2G15910 diphthamide biosynthesis protein Os06g0661600 protein (cDNA clone:J013148O09, full insert sequence) Q651U5 Q651U5_ORYSJ Os06g0661600 OSJNBa0051O02.36 OSJNBb0065C04.3 OSNPB_060661600 ENOG411E66G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E66F Q2HIM5 MMGT_ARATH Membrane magnesium transporter (ER membrane protein complex subunit 5 homolog) FUNCTION: Mediates Mg(2+) transport. {ECO:0000250|UniProtKB:Q8K273}. 11828 Membrane magnesium transporter (ER membrane protein complex subunit 5 homolog) early endosome [GO:0005769]; early endosome membrane [GO:0031901]; endoplasmic reticulum [GO:0005783]; ER membrane protein complex [GO:0072546]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; inorganic cation transmembrane transporter activity [GO:0022890]; cation transmembrane transport [GO:0098655] locus:505006578; AT5G03345 Membrane magnesium transporter Expressed protein (Os12g0566400 protein) (cDNA clone:001-022-D05, full insert sequence) (cDNA clone:J033037I18, full insert sequence),Os11g0568633 protein (Fragment) Q2QNG6,A0A0P0Y3C1 Q2QNG6_ORYSJ,A0A0P0Y3C1_ORYSJ LOC_Os12g37880 Os12g0566400 OSNPB_120566400,Os11g0568633 OSNPB_110568633 ENOG411E66E RTM2 Q9M670 RTM2_ARATH Protein RESTRICTED TEV MOVEMENT 2 (Alpha-crystallin domains containing protein 41.3) (AtAcd41.3) (Restricted tobacco etch virus movement protein 2) DISRUPTION PHENOTYPE: Susceptible to systemic infection by tobacco etch virus (TEV). {ECO:0000269|PubMed:9892709}. Altered response to tobacco etch virus-J. Carrington-2000 FUNCTION: Required for the restriction of long-distance movement of the pathogenic tobacco etch virus (TEV) without causing a hypersensitive response or inducing systemic acquired resistance. Seems to not be involved in heat resistance. {ECO:0000269|PubMed:10760245, ECO:0000269|PubMed:20478894, ECO:0000269|PubMed:22723957, ECO:0000269|PubMed:9892709}. 41340 Protein RESTRICTED TEV MOVEMENT 2 (Alpha-crystallin domains containing protein 41.3) (AtAcd41.3) (Restricted tobacco etch virus movement protein 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; defense response [GO:0006952]; response to virus [GO:0009615]; transport of virus in host, tissue to tissue [GO:0046741] TISSUE SPECIFICITY: Expressed in leaves, stems, and inflorescence, exclusively in phloem-associated cells (e.g. sieve elements). {ECO:0000269|PubMed:10760245, ECO:0000269|PubMed:11743111, ECO:0000269|PubMed:25081480}. locus:2175438; AT5G04890 Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411E66D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Proline-rich protein NA NA NA NA NA NA NA ENOG411EC08 Q9LYQ7 Q9LYQ7_ARATH HXXXD-type acyl-transferase family protein (Hypersensitivity related protein-like) (Uncharacterized protein At5g07080) (Uncharacterized protein T28J14_20) ARA:AT5G07080-MONOMER; 48950 HXXXD-type acyl-transferase family protein (Hypersensitivity related protein-like) (Uncharacterized protein At5g07080) (Uncharacterized protein T28J14_20) N-acyltransferase activity [GO:0016410] locus:2169459; AT5G07080 Transferase family NA NA NA NA NA NA NA ENOG411EC09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CorA-like Mg2+ transporter protein Os01g0601000 protein A0A0P0V4X4 A0A0P0V4X4_ORYSJ Os01g0601000 OSNPB_010601000 ENOG411EC04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0182600 protein A0A0N7KIL7 A0A0N7KIL7_ORYSJ Os04g0182600 OSNPB_040182600 ENOG411EC05 BIK1 O48814 BIK1_ARATH Serine/threonine-protein kinase BIK1 (EC 2.7.11.1) (Protein BOTRYTIS-INDUCED KINASE 1) DISRUPTION PHENOTYPE: Altered growth traits, early flowering, weak stems, small siliques and reduced fertility. Mutant plants have a severely impaired resistance to Botrytis and A.brassicicola (PubMed:16339855). Reduced plant size (PubMed:20413097, PubMed:27679580). Enhanced resistance to Plasmodiophora brassicae, a soil-borne obligate pathogen that causes clubroot disease (PubMed:27679580). Hypersensitivity to the plant hormone brassinolide (PubMed:23818580). {ECO:0000269|PubMed:16339855, ECO:0000269|PubMed:20413097, ECO:0000269|PubMed:23818580, ECO:0000269|PubMed:27679580}. After A. brassicicola infection increased disease symptoms and pathogen growth are observed when compared to wild type.,After spraying mutant plants with Botrytis spores disease symptoms increase rapidly showing chlorosis necrosis and complete plant decay compared with wild type plants. Susceptible to necrotrophic fungi; Resistant to bacterial infection-T. Mengiste-2005 FUNCTION: Plays a central role in immune responses (PubMed:20413097). Required to activate the resistance responses to necrotrophic pathogens (PubMed:16339855). Phosphorylates FLS2 and BAK1 (PubMed:20404519, PubMed:24104392). Involved in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) signaling and defense responses downstream of FLS2. Acts additively with PBL1 in PTI defenses (PubMed:20413097). Acts as positive regulator of the PAMP flg22-induced increase of cytosolic calcium. Binds directly and phosphorylates the NADPH oxidase RBOHD at specific sites in a calcium-independent manner to enhance reactive oxygen species (ROS) generation upon flg22 perception. ROS production in response to flg22 controls stomatal movement and restriction of bacterial entry into leaf tissues (PubMed:24629339). Seems not required for flg22-induced MAPK activation (Probable). Required for Pep1-induced defenses. Pep1 is an endogenous elicitor that potentiates PAMP-inducible plant responses. In association with PEPR1, acts downstream of the canonical ethylene signaling cascade to regulate ethylene responses (PubMed:23431184). Involved in ethylene signaling. Destabilizes EIN3, the key transcription activator in ethylene signaling, and represses EIN3-dependent transcription (PubMed:26021844). Acts as a negative regulator in brassinosteroid (BR) signaling. Functions in BR signaling by direct interaction with the BR receptor BRI1 cytosolic kinase domain (PubMed:23818580). {ECO:0000269|PubMed:16339855, ECO:0000269|PubMed:20404519, ECO:0000269|PubMed:20413097, ECO:0000269|PubMed:23431184, ECO:0000269|PubMed:23818580, ECO:0000269|PubMed:24104392, ECO:0000269|PubMed:24629339, ECO:0000269|PubMed:26021844, ECO:0000305, ECO:0000305|PubMed:22504181}. MISCELLANEOUS: The association with FLS2 and BAK1 is reduced after flagellin perception, BIK1 being probably released from the receptor complex upon phosphorylation. 2.7.11.1 44097 Serine/threonine-protein kinase BIK1 (EC 2.7.11.1) (Protein BOTRYTIS-INDUCED KINASE 1) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response to fungus [GO:0050832]; innate immune response [GO:0045087]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; protein autophosphorylation [GO:0046777]; response to fungus [GO:0009620] locus:2039772; AT2G39660 botrytis-induced kinase1 NA NA NA NA NA NA NA ENOG411EC06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter G family member 22-like NA NA NA NA NA NA NA ENOG411EC07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411EC00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG NA NA NA NA NA NA NA ENOG411EC01 NCED2 O49505 NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic (AtNCED2) (EC 1.13.11.51) Double mutants were indistinguishable from bps1 single mutants. FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. {ECO:0000269|PubMed:11532178}. MetaCyc:AT4G18350-MONOMER; 1.13.11.51; 1.13.11.51 65067 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic (AtNCED2) (EC 1.13.11.51) chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; 9-cis-epoxycarotenoid dioxygenase activity [GO:0045549]; metal ion binding [GO:0046872]; abscisic acid biosynthetic process [GO:0009688] TISSUE SPECIFICITY: Very low in all tissues. Expressed at the point of organ attachment and the abscission zones in the plant. {ECO:0000269|PubMed:12834401, ECO:0000269|PubMed:16412079}. locus:2124489; AT4G18350 nine-cis-epoxycarotenoid dioxygenase 2 NA NA NA NA NA NA NA ENOG411EC02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP NA NA NA NA NA NA NA ENOG411EC03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0330200 protein Q6Z9M1 Q6Z9M1_ORYSJ Os08g0330200 OsJ_26906 OSNPB_080330200 P0002F11.24 P0474F07.2 ENOG411EC0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411EC0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EC0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) NA NA NA NA NA NA NA ENOG411EC0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EC0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411EC0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF629) Expressed protein (Os11g0598800 protein) (cDNA clone:J033079I07, full insert sequence),Os11g0549605 protein,Os11g0549610 protein,Os11g0596200 protein,Os07g0514400 protein,Os07g0514600 protein Q2R1N5,A0A0P0Y368,A0A0P0Y3C5,A0A0P0Y3Z9,A0A0P0X6Y8,A0A0N7KNI9 Q2R1N5_ORYSJ,A0A0P0Y368_ORYSJ,A0A0P0Y3C5_ORYSJ,A0A0P0Y3Z9_ORYSJ,A0A0P0X6Y8_ORYSJ,A0A0N7KNI9_ORYSJ LOC_Os11g38610 Os11g0598800 OsJ_34445 OSNPB_110598800,Os11g0549605 OSNPB_110549605,Os11g0549610 OSNPB_110549610,Os11g0596200 OSNPB_110596200,Os07g0514400 OSNPB_070514400,Os07g0514600 OSNPB_070514600 ENOG411EC0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EC0B Q84JH2 Q84JH2_ARATH Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein (Putative NTF2-containing RNA-binding protein) 50074 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein (Putative NTF2-containing RNA-binding protein) cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; transport [GO:0006810] locus:2152566; AT5G48650 nuclear transport factor 2 NA NA NA NA NA NA NA ENOG411E959 MQM1.9 Q9LT00 Q9LT00_ARATH Homeodomain-like transcriptional regulator (Myb family transcription factor) (Similarity to I-box binding factor) 38046 Homeodomain-like transcriptional regulator (Myb family transcription factor) (Similarity to I-box binding factor) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2171711; AT5G23650 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E958 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E951 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MutS domain II NA NA NA NA NA NA NA ENOG411E950 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E953 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E952 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin superfamily protein NA NA NA NA NA NA NA ENOG411E955 MIK19.26 Q8H0Z8 Q8H0Z8_ARATH Protein kinase superfamily protein (Uncharacterized protein At5g56790) 74304 Protein kinase superfamily protein (Uncharacterized protein At5g56790) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2165041; AT5G56790 kinase family NA NA NA NA NA NA NA ENOG411E954 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E957 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class I (C) catalytic domain NA NA NA NA NA NA NA ENOG411E956 MKK8 Q9M8J5 M2K8_ARATH Mitogen-activated protein kinase kinase 8 (AtMKK8) (MAP kinase kinase 8) (EC 2.7.12.2) 2.7.12.2 34423 Mitogen-activated protein kinase kinase 8 (AtMKK8) (MAP kinase kinase 8) (EC 2.7.12.2) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase kinase activity [GO:0004708]; protein serine/threonine kinase activity [GO:0004674]; regulation of mitotic cell cycle [GO:0007346]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2082390; AT3G06230 Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411E95I Q9SS92,F4J4R8 Q9SS92_ARATH,F4J4R8_ARATH F4P13.17 protein (Major facilitator superfamily protein),Major facilitator superfamily protein 62625,60635 F4P13.17 protein (Major facilitator superfamily protein),Major facilitator superfamily protein integral component of membrane [GO:0016021] locus:2084183; AT3G01630 Nodulin-like NA NA NA NA NA NA NA ENOG411E95K EXPA21,EXPA22,EXPA23,EXPA25,EXPA26 Q9FL81,Q9FL80,Q9FL79,Q9FL77,Q9FL78 EXP21_ARATH,EXP22_ARATH,EXP23_ARATH,EXP25_ARATH,EXP26_ARATH Expansin-A21 (AtEXPA21) (Alpha-expansin-21) (At-EXP21) (AtEx21) (Ath-ExpAlpha-1.20),Expansin-A22 (AtEXPA22) (Alpha-expansin-22) (At-EXP22) (AtEx22) (Ath-ExpAlpha-1.15),Expansin-A23 (AtEXPA23) (Alpha-expansin-23) (At-EXP23) (AtEx23) (Ath-ExpAlpha-1.17),Expansin-A25 (AtEXPA25) (Alpha-expansin-25) (At-EXP25) (AtEx25) (Ath-ExpAlpha-1.18),Putative expansin-A26 (AtEXPA26) (Alpha-expansin-26) (At-EXP26) (AtEx26) (Ath-ExpAlpha-1.16) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 28134,30962,30316,30491,30980 Expansin-A21 (AtEXPA21) (Alpha-expansin-21) (At-EXP21) (AtEx21) (Ath-ExpAlpha-1.20),Expansin-A22 (AtEXPA22) (Alpha-expansin-22) (At-EXP22) (AtEx22) (Ath-ExpAlpha-1.15),Expansin-A23 (AtEXPA23) (Alpha-expansin-23) (At-EXP23) (AtEx23) (Ath-ExpAlpha-1.17),Expansin-A25 (AtEXPA25) (Alpha-expansin-25) (At-EXP25) (AtEx25) (Ath-ExpAlpha-1.18),Putative expansin-A26 (AtEXPA26) (Alpha-expansin-26) (At-EXP26) (AtEx26) (Ath-ExpAlpha-1.16) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] locus:2157215; AT5G39260,AT5G39270,AT5G39280,AT5G39300,AT5G39290 Pollen allergen NA NA NA NA NA NA NA ENOG411E95J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF810) Os08g0390100 protein A0A0N7KPT1 A0A0N7KPT1_ORYSJ Os08g0390100 OSNPB_080390100 ENOG411E95M SINA2 Q93WE4,F4JDF6 Q93WE4_ARATH,F4JDF6_ARATH E3 ubiquitin-protein ligase (EC 2.3.2.27) FUNCTION: Probable inactive E3 ubiquitin-protein ligase that plays a role in regulation of autophagy. Upon starvation, involved in maintaining ATG6 homeostasis by competitively associating with ATG6, a component of the autophagosome complex (PubMed:28351989). Acts as positive regulator of drought stress response. Functions as positive regulator of abscisic acid-mediated stomatal closure (PubMed:24350984). {ECO:0000269|PubMed:24350984, ECO:0000269|PubMed:28351989}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|RuleBase:RU201113}. R-ATH-5689880;R-ATH-983168; 2.3.2.27 25140,28321 E3 ubiquitin-protein ligase (EC 2.3.2.27) nucleus [GO:0005634]; metal ion binding [GO:0046872]; multicellular organism development [GO:0007275]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2091581; AT3G13672 Seven in absentia protein family NA NA NA NA NA NA NA ENOG411E95A AtbZIP3 Q9LFU3 Q9LFU3_ARATH At5g15830 (BZIP DNA-binding protein-like) (Basic leucine-zipper 3) (Putative bZIP transcription factor AtbZip3) 21657 At5g15830 (BZIP DNA-binding protein-like) (Basic leucine-zipper 3) (Putative bZIP transcription factor AtbZip3) DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2143191; AT5G15830 Basic region leucine zipper NA NA NA NA NA NA NA ENOG411E95C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_10 NA NA NA NA NA NA NA ENOG411E95B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0495800 protein) Q2QQF7 Q2QQF7_ORYSJ Os12g0495800 LOC_Os12g31200 OsJ_36161 OSNPB_120495800 ENOG411E95E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN domain Os04g0356600 protein (Fragment) A0A0P0W9H2 A0A0P0W9H2_ORYSJ Os04g0356600 OSNPB_040356600 ENOG411E95G DTX15,DTX17 F4IHU9,Q9C9U1,A0A1P8B0B6 DTX15_ARATH,DTX17_ARATH,A0A1P8B0B6_ARATH Protein DETOXIFICATION 15 (AtDTX15) (Multidrug and toxic compound extrusion protein 15) (MATE protein 15),Protein DETOXIFICATION 17 (AtDTX17) (Multidrug and toxic compound extrusion protein 17) (MATE protein 17),MATE efflux family protein R-ATH-425366; 52187,51054,47667 Protein DETOXIFICATION 15 (AtDTX15) (Multidrug and toxic compound extrusion protein 15) (MATE protein 15),Protein DETOXIFICATION 17 (AtDTX17) (Multidrug and toxic compound extrusion protein 17) (MATE protein 17),MATE efflux family protein integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2040839;,locus:2027834; AT2G34360,AT1G73700 MatE NA NA NA NA NA NA NA ENOG411E95F MSG15.1 A0A1P8B9V5,F4KEQ5 A0A1P8B9V5_ARATH,F4KEQ5_ARATH Glucose-methanol-choline (GMC) oxidoreductase family protein R-ATH-6798163; 60459,64165 Glucose-methanol-choline (GMC) oxidoreductase family protein flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2173053; AT5G51930 GMC oxidoreductase NA NA NA NA NA NA NA ENOG411E95Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E95X P93752 P93752_ARATH Protein kinase superfamily protein (Uncharacterized protein At2g41930) 39396 Protein kinase superfamily protein (Uncharacterized protein At2g41930) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2064590; AT2G41930 ATP binding kinase protein kinase protein serine threonine kinase NA NA NA NA NA NA NA ENOG411E95Z MUG13.11 Q9FF71,Q9LYG4,A0A1P8BDW2 Q9FF71_ARATH,Q9LYG4_ARATH,A0A1P8BDW2_ARATH NEP-interacting protein, putative (DUF239) (Similarity to carboxyl-terminal proteinase) (Uncharacterized protein At5g05030),NEP-interacting protein, putative (DUF239) (Uncharacterized protein T22P22_50),Uncharacterized protein 40080,33973,22449 NEP-interacting protein, putative (DUF239) (Similarity to carboxyl-terminal proteinase) (Uncharacterized protein At5g05030),NEP-interacting protein, putative (DUF239) (Uncharacterized protein T22P22_50),Uncharacterized protein locus:2175299;,locus:2181965; AT5G05030,AT5G11660 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E95Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411E95P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3403) NA NA NA NA NA NA NA ENOG411E95S O64753 O64753_ARATH CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) FUNCTION: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. {ECO:0000256|RuleBase:RU810713}. PATHWAY: Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2. {ECO:0000256|RuleBase:RU810713}. ARA:AT2G34890-MONOMER; R-ATH-499943; 6.3.4.2 66375 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) ATP binding [GO:0005524]; CTP synthase activity [GO:0003883]; 'de novo' CTP biosynthetic process [GO:0044210]; glutamine metabolic process [GO:0006541] locus:2044707; AT2G34890 CTP synthase N-terminus NA NA NA NA NA NA NA ENOG411E95R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FKS1_dom1 NA NA NA NA NA NA NA ENOG411E95U MQK4.5 Q9FFF0 Q9FFF0_ARATH Gb|AAF32477.1 (NC domain-containing protein-like protein) 26497 Gb|AAF32477.1 (NC domain-containing protein-like protein) locus:2171347; AT5G16330 Pfam:NC NA NA NA NA NA NA NA ENOG411E95T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WAX2 C-terminal domain Os04g0512200 protein (cDNA, clone: J043005G13, full insert sequence),Os02g0621300 protein (Putative CER1 protein) B7F8A0,Q6K9F6 B7F8A0_ORYSJ,Q6K9F6_ORYSJ Os04g0512200 OSNPB_040512200,Os02g0621300 OJ1234_B11.10 OJ1372_D06.35 OSNPB_020621300 ENOG411E95W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:YDG_SRA NA NA NA NA NA NA NA ENOG411EEDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411DUIN GLOX1 Q9FYG4,F4K172 GLOX1_ARATH,F4K172_ARATH Aldehyde oxidase GLOX1 (EC 1.2.3.1) (Glyoxal oxidase 1),Glyoxal oxidase-related protein FUNCTION: Catalyzes the oxidation of aldehydes to the corresponding carboxylate by coupling the reaction to the reduction of dioxygen to hydrogen peroxide. Substrates include glyoxal and other aldehydes (By similarity). May be regulated by the transcription factor MYB80 during anther development and play a role in tapetum and pollen development (PubMed:21673079). {ECO:0000250|UniProtKB:Q01772, ECO:0000269|PubMed:21673079}. 1.2.3.1 67775,64997 Aldehyde oxidase GLOX1 (EC 1.2.3.1) (Glyoxal oxidase 1),Glyoxal oxidase-related protein extracellular region [GO:0005576]; aldehyde oxidase activity [GO:0004031]; geranial:oxygen oxidoreductase activity [GO:0102797]; heptaldehyde:oxygen oxidoreductase activity [GO:0102798]; multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: During anther development, expressed from stage 10 to the latest stage 14 in tapetal cells, developing microspores and mature pollen grains and released pollen grains. {ECO:0000269|PubMed:21673079}. locus:2019564;,locus:2180791; AT1G67290,AT5G19580 glyoxal or galactose oxidase Glyoxal oxidase-like (Os01g0677000 protein) (cDNA clone:002-120-B11, full insert sequence),Os05g0559000 protein (Putative glyoxal oxidase),Os05g0559000 protein Q8S198,Q6AT39,A0A0P0WQW4 Q8S198_ORYSJ,Q6AT39_ORYSJ,A0A0P0WQW4_ORYSJ Os01g0677000 Os01g0677000 B1144G04.6 OsJ_02994 OSNPB_010677000,Os05g0559000 Os05g0559000 OsJ_19517 OSJNBa0001A14.8 OSNPB_050559000,Os05g0559000 OSNPB_050559000 ENOG411DUIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE associated Golgi protein Os07g0571500 protein A0A0P0X7S2 A0A0P0X7S2_ORYSJ Os07g0571500 OSNPB_070571500 ENOG411DUIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YT521-B-like domain Os08g0224200 protein,Os08g0224200 protein (Fragment) A0A0P0XD36,A0A0P0XDH3 A0A0P0XD36_ORYSJ,A0A0P0XDH3_ORYSJ Os08g0224200 OSNPB_080224200 ENOG411DUIK MDA7.18 Q6NPP2 Q6NPP2_ARATH At5g56120 (RNA polymerase II elongation factor) (Uncharacterized protein At5g56120) 27175 At5g56120 (RNA polymerase II elongation factor) (Uncharacterized protein At5g56120) integral component of membrane [GO:0016021]; translation elongation factor activity [GO:0003746] locus:2161830; AT5G56120 NA Os08g0496400 protein (cDNA clone:002-174-B04, full insert sequence),Os08g0496600 protein,Os03g0453550 protein Q7F8V2,Q7F8V1,A0A0P0VZB1 Q7F8V2_ORYSJ,Q7F8V1_ORYSJ,A0A0P0VZB1_ORYSJ Os08g0496400 Os08g0496400 B1142B04.31 OSNPB_080496400 P0026F07.2,Os08g0496600 B1142B04.33 OSNPB_080496600 P0026F07.4,Os03g0453550 OSNPB_030453550 ENOG411DUIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding protein NA NA NA NA NA NA NA ENOG411DUII MYB80 Q9XHV0 MYB80_ARATH Transcription factor MYB80 (MYB-related protein 103) (AtMYB103) (Myb-related protein 80) (AtMYB80) (Protein MALE STERILE 188) DISRUPTION PHENOTYPE: Male sterility due to distorted pollen grains lacking reticulate exine on their surface. {ECO:0000269|PubMed:17727613}. Defects in tapetal cell wall degradation and tapetal protoplast degeneration during tapetum development. Microspores are either degraded or shrunken and vacuolated. Callose dissolution and exine formation in anther development are also affected.,Male sterile. Male sterile; Abnormal pollen exine layer-Z. Yang-2007 FUNCTION: Transcription factor that binds to the DNA sequence 5'-CCAACC-3'. Regulates directly PME5, UND and GLOX1 (PubMed:21673079). Essential for tapetum development in anthers and microsporogenesis (PubMed:12848824, PubMed:21673079). Regulates the timing of tapetal programmed cell death (PCD) which is critical for pollen development. May act through the activation of UND, encoding an A1 aspartic protease (PubMed:21673079). Required for anther development by regulating tapetum development, callose dissolution and exine formation. Acts upstream of A6 and FAR2/MS2, two genes required for pollen exine formation (PubMed:17727613). Negatively regulates trichome endoreduplication and trichome branching (PubMed:12848824). {ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613, ECO:0000269|PubMed:21673079}. MISCELLANEOUS: Plants silencing MYB80 have the majority of pollen grains distorted in shape with reduced or no cytoplasmic content, display early tapetal degeneration with large opaque bodies in the tapetal cytoplasm, and trichomes on cauline and rosette leaves contain increased nuclear DNA content and produces additional branches. {ECO:0000269|PubMed:12848824}. 35983 Transcription factor MYB80 (MYB-related protein 103) (AtMYB103) (Myb-related protein 80) (AtMYB80) (Protein MALE STERILE 188) nucleus [GO:0005634]; chromatin binding [GO:0003682]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; anther wall tapetum development [GO:0048658]; pollen development [GO:0009555]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351]; trichome morphogenesis [GO:0010090] DEVELOPMENTAL STAGE: During anther development, expressed from stage 4 to stage 6 in microsporocytes and tapetal cells. At the tetrad stage, expressed predominantly in tapetal cells. During microgametogenesis, expression decreases radically in the tapetum and microspores. {ECO:0000269|PubMed:21957980}. TISSUE SPECIFICITY: Expressed in the tapetum and middle layer of developing anthers (PubMed:10353220). Expressed in trichomes (PubMed:12848824). {ECO:0000269|PubMed:10353220, ECO:0000269|PubMed:12848824}. locus:2161820; AT5G56110 arabidopsis thaliana myb domain protein Transcription factor MYB80 (Myb-related protein 80) (OsMYB80) Q7XQN1 MYB80_ORYSJ MYB80 Os04g0470600 LOC_Os04g39470 OSJNBa0089K21.5 FUNCTION: Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. ENOG411DUIF TUBA2,TUBA4,TUBA6,TUA6 B9DGT7,Q0WV25,P29511,B9DFF8 TBA2_ARATH,TBA4_ARATH,TBA6_ARATH,B9DFF8_ARATH Tubulin alpha-2 chain,Tubulin alpha-4 chain,Tubulin alpha-6 chain,Tubulin alpha chain Short, thick hypocotyl; Helical growth; Right-handed petiole torsions; Sensitive to microtubule-disrupting drugs-A. Schaffner-2009,Short, thick hypocotyl-T. Hoson-2009 FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.,FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. {ECO:0000256|RuleBase:RU000352, ECO:0000256|SAAS:SAAS00103398}. MISCELLANEOUS: There are six genes coding for alpha-tubulin. The sequences coded by genes 2 and 4 are identical.,MISCELLANEOUS: There are six genes coding for alpha-tubulin. R-ATH-114608;R-ATH-5617833;R-ATH-6811434;R-ATH-983189; 49541,49538,47235 Tubulin alpha-2 chain,Tubulin alpha-4 chain,Tubulin alpha-6 chain,Tubulin alpha chain cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017],cell wall [GO:0005618]; cytosol [GO:0005829]; membrane [GO:0016020]; microtubule [GO:0005874]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; tubulin complex [GO:0045298]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; cellular response to gravity [GO:0071258]; microtubule cytoskeleton organization [GO:0000226]; response to salt stress [GO:0009651] locus:3439219; AT1G50010,AT1G04820,AT4G14960 Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) Tubulin alpha-2 chain,Tubulin alpha chain,Tubulin alpha chain (Fragment) Q53M52,Q75GI3,A0A0P0W3E6 TBA2_ORYSJ,Q75GI3_ORYSJ,A0A0P0W3E6_ORYSJ TUBA Os11g0247300 LOC_Os11g14220,TubA OSJNBb0122C16.10 LOC_Os03g51600 Os03g0726100 OsJ_12419 OSJNBa0013A09.14 OSNPB_030726100,Os03g0726100 OSNPB_030726100 FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity). {ECO:0000250}.,FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. {ECO:0000256|RuleBase:RU000352, ECO:0000256|SAAS:SAAS00103398}.,FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. {ECO:0000256|RuleBase:RU000352}. ENOG411DUIG PLDALPHA4,PLDEPSILON Q9C888,A0A1P8AMV3 PLDA4_ARATH,A0A1P8AMV3_ARATH Phospholipase D alpha 4 (AtPLDalpha4) (PLD alpha 4) (EC 3.1.4.4) (PLDalpha3) (Phospholipase D epsilon) (AtPLDepsilon) (PLD epsilon),Phospholipase D (EC 3.1.4.4) DISRUPTION PHENOTYPE: Reduced growth. {ECO:0000269|PubMed:19143999}. Small root system; Sensitive to hyperosmotic stress-X. Wang-2009 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Promotes growth and plays a role in nitrogen signaling. {ECO:0000269|PubMed:19143999}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. 3.1.4.4; 3.1.4.4 86770,84176 Phospholipase D alpha 4 (AtPLDalpha4) (PLD alpha 4) (EC 3.1.4.4) (PLDalpha3) (Phospholipase D epsilon) (AtPLDepsilon) (PLD epsilon),Phospholipase D (EC 3.1.4.4) plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; cell division [GO:0051301]; cell growth [GO:0016049]; cellular response to nitrogen starvation [GO:0006995]; cellular response to phosphate starvation [GO:0016036]; cellular response to potassium ion starvation [GO:0051365]; phosphatidylcholine metabolic process [GO:0046470]; phospholipid catabolic process [GO:0009395]; positive regulation of nitrogen utilization [GO:0045848]; post-embryonic development [GO:0009791]; response to osmotic stress [GO:0006970]; root development [GO:0048364],membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques,flowers and inflorescences. {ECO:0000269|PubMed:19143999}. locus:2035716; AT1G55180 Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) NA NA NA NA NA NA NA ENOG411DUID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os09g0481700 protein (cDNA clone:J013001K23, full insert sequence) (cDNA clone:J033138N11, full insert sequence) Q0J0V4 Q0J0V4_ORYSJ Os09g0481700 Os09g0481700 OsJ_29782 OSNPB_090481700 ENOG411DUIE Basic Proline-rich Protein 1 Q494P4,A0A1P8AY74,A8MRI7 Q494P4_ARATH,A0A1P8AY74_ARATH,A8MRI7_ARATH At2g40070 (En/Spm-like transposon protein) (Flocculation FLO11-like protein),Flocculation FLO11-like protein 64159,50840,59419 At2g40070 (En/Spm-like transposon protein) (Flocculation FLO11-like protein),Flocculation FLO11-like protein microtubule associated complex [GO:0005875] locus:2061211; AT2G40070 Retrotransposon protein Os01g0141900 protein (cDNA clone:J023068G12, full insert sequence) Q0JQS7 Q0JQS7_ORYSJ Os01g0141900 Os01g0141900 OSNPB_010141900 ENOG411DUIB iqd33 Q8L8M9 Q8L8M9_ARATH IQ-domain 33 (Uncharacterized protein At5g35670) 49544 IQ-domain 33 (Uncharacterized protein At5g35670) locus:2177266; AT5G35670 IQ Os06g0611100 protein,Os06g0611150 protein (Fragment),Os05g0369200 protein Q69XG0,A0A0P0WYM6,A0A0P0WLJ4 Q69XG0_ORYSJ,A0A0P0WYM6_ORYSJ,A0A0P0WLJ4_ORYSJ Os06g0611100 Os06g0611100 OSNPB_060611100 P0490F09.33,Os06g0611150 OSNPB_060611150,Os05g0369200 OSNPB_050369200 ENOG411DUIC CM1,CM3 P42738,Q9C544 CM1_ARATH,CM3_ARATH Chorismate mutase 1, chloroplastic (AtCM1) (EC 5.4.99.5) (CM-1),Chorismate mutase 3, chloroplastic (AtCM3) (EC 5.4.99.5) (CM-3) FUNCTION: May play a role in chloroplast biogenesis. {ECO:0000305}. PATHWAY: Metabolic intermediate biosynthesis; prephenate biosynthesis; prephenate from chorismate: step 1/1. ARA:AT3G29200-MONOMER;MetaCyc:AT3G29200-MONOMER;,ARA:AT1G69370-MONOMER;MetaCyc:AT1G69370-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 5.4.99.5 38239,36570 Chorismate mutase 1, chloroplastic (AtCM1) (EC 5.4.99.5) (CM-1),Chorismate mutase 3, chloroplastic (AtCM3) (EC 5.4.99.5) (CM-3) chloroplast [GO:0009507]; cytosol [GO:0005829]; chorismate mutase activity [GO:0004106]; L-ascorbate peroxidase activity [GO:0016688]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate metabolic process [GO:0046417],chloroplast [GO:0009507]; plastid [GO:0009536]; chorismate mutase activity [GO:0004106]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate metabolic process [GO:0046417]; defense response to bacterium [GO:0042742]; tryptophan biosynthetic process [GO:0000162] TISSUE SPECIFICITY: Expressed in roots, shoots, rosette leaves, stems, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:10564818}.,TISSUE SPECIFICITY: Expressed in roots, stems, cauline leaves, flowers and siliques, and at lower levels in rosette leaves. {ECO:0000269|PubMed:10564818}. locus:2094832;,locus:2007146; AT3G29200,AT1G69370 chorismate mutase Chorismate mutase (EC 5.4.99.5) Q5JN19,Q2QN58 Q5JN19_ORYSJ,Q2QN58_ORYSJ Os01g0764400 Os01g0764400 OsJ_03561 OSNPB_010764400 P0403C05.8,LOC_Os12g38900 Os12g0578200 OSNPB_120578200 ENOG411DUIA Q1PEB4,Q9C946,A0A1P8AWR5,A0A1P8B5X1,A0A1P8AWV5,A0A1P8AWR9,A0A1P8AWV6,A0A1P8AWV2 Y4498_ARATH,Q9C946_ARATH,A0A1P8AWR5_ARATH,A0A1P8B5X1_ARATH,A0A1P8AWV5_ARATH,A0A1P8AWR9_ARATH,A0A1P8AWV6_ARATH,A0A1P8AWV2_ARATH Uncharacterized protein At4g04980,Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein T7P1.21),Hydroxyproline-rich glycoprotein family protein,Uncharacterized protein 82137,97874,101875,78823,101802,102003,100835,100707 Uncharacterized protein At4g04980,Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein T7P1.21),Hydroxyproline-rich glycoprotein family protein,Uncharacterized protein chloroplast outer membrane [GO:0009707]; chloroplast organization [GO:0009658] locus:2206066; AT4G04980,AT1G61080 NA NA NA NA NA NA NA NA ENOG411DUIZ XLT2 F4K6F1 GT18_ARATH Xyloglucan galactosyltransferase XLT2 (EC 2.4.1.-) (Glycosyltransferase 18) (AtGT18) (Protein XYLOGLUCAN L-SIDE CHAIN GALACTOSYLTRANSFERASE POSITION 2) FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in galactosylating hemicellulose xyloglucan (XyG) at the second position of the XXXG motif to form XLXG (PubMed:22474179). Associates with other xyloglucan-synthesizing enzymes to form multiprotein complexes for xyloglucan synthesis in the Golgi (PubMed:25392066). {ECO:0000269|PubMed:22474179, ECO:0000269|PubMed:25392066}. 2.4.1.- 59645 Xyloglucan galactosyltransferase XLT2 (EC 2.4.1.-) (Glycosyltransferase 18) (AtGT18) (Protein XYLOGLUCAN L-SIDE CHAIN GALACTOSYLTRANSFERASE POSITION 2) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, stems and flowers. {ECO:0000269|PubMed:15020758}. locus:2167933; AT5G62220 xyloglucan galactosyltransferase KATAMARI1 Os04g0574100 protein (cDNA clone:J023008D04, full insert sequence) (cDNA clone:J023052A13, full insert sequence),Os06g0342000 protein (Putative xyloglucan galactosyltransferase) (cDNA clone:J033052I18, full insert sequence) Q0JAV7,Q5Z9Y2 Q0JAV7_ORYSJ,Q5Z9Y2_ORYSJ Os04g0574100 Os04g0574100 OSNPB_040574100,Os06g0342000 Os06g0342000 OSNPB_060342000 P0428A03.34 P0459H02.11 ENOG411DUIX ACX4 Q96329 ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal (AOX 4) (EC 1.3.3.6) (G6p) (Short-chain acyl-CoA oxidase) (AtCX4) (AtG6) (SAOX) Resistant to 2,4-DB-I. Graham-2003 FUNCTION: Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester). ARA:AT3G51840-MONOMER;MetaCyc:AT3G51840-MONOMER; R-ATH-71064; 1.3.3.6; 1.3.3.6 47557 Acyl-coenzyme A oxidase 4, peroxisomal (AOX 4) (EC 1.3.3.6) (G6p) (Short-chain acyl-CoA oxidase) (AtCX4) (AtG6) (SAOX) glyoxysome [GO:0009514]; peroxisome [GO:0005777]; acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; flavin adenine dinucleotide binding [GO:0050660]; embryo development ending in seed dormancy [GO:0009793]; fatty acid beta-oxidation [GO:0006635]; short-chain fatty acid metabolic process [GO:0046459] DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak at day 5 to 7. Decreases after illumination but still detectable 5 days after illumination. TISSUE SPECIFICITY: Particularly abundant in etiolated cotyledons. Also present in flowers, roots and siliques, but not detected in green cotyledons, rosette leaves and stems. {ECO:0000269|PubMed:10212254}. locus:2074403; AT3G51840 acyl-coenzyme A oxidase 4 Os05g0163700 protein (Putative glutaryl-CoA dehydrogenase) (cDNA clone:J023099O18, full insert sequence),Os01g0159400 protein (Putative glutaryl-CoA dehydrogenase) (cDNA clone:J023103E08, full insert sequence) Q75IR2,Q5ZEL4 Q75IR2_ORYSJ,Q5ZEL4_ORYSJ Os05g0163700 OsJ_17232 OSJNBb0099P06.11 OSNPB_050163700,Os01g0159400 Os01g0159400 OsJ_00462 OSNPB_010159400 P0041E11.16 ENOG411DUIY VPS24-1,VPS24-2,VPS24.2 Q9FFB3,Q9LXH5,F4J4C4 VP241_ARATH,VP242_ARATH,F4J4C4_ARATH Vacuolar protein sorting-associated protein 24 homolog 1 (AtVPS24-1) (Charged multivesicular body protein 3 homolog 1) (ESCRT-III complex subunit VPS24 homolog 1),Putative vacuolar protein sorting-associated protein 24 homolog 2 (AtVPS24-2) (Charged multivesicular body protein 3 homolog 2) (ESCRT-III complex subunit VPS24 homolog 2),SNF7 family protein FUNCTION: Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo (By similarity). {ECO:0000250}. R-ATH-1632852;R-ATH-917729; 25997,22037,15045 Vacuolar protein sorting-associated protein 24 homolog 1 (AtVPS24-1) (Charged multivesicular body protein 3 homolog 1) (ESCRT-III complex subunit VPS24 homolog 1),Putative vacuolar protein sorting-associated protein 24 homolog 2 (AtVPS24-2) (Charged multivesicular body protein 3 homolog 2) (ESCRT-III complex subunit VPS24 homolog 2),SNF7 family protein cytosol [GO:0005829]; ESCRT III complex [GO:0000815]; late endosome [GO:0005770]; intralumenal vesicle formation [GO:0070676]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],ESCRT III complex [GO:0000815]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],intracellular [GO:0005622]; vacuolar transport [GO:0007034] locus:2172686;,locus:2075924; AT5G22950,AT3G45000 vacuolar protein sorting-associated protein 24 homolog Os07g0479400 protein,Os03g0108400 protein (SNF7 family protein, expressed) Q7XI79,Q10SX2 Q7XI79_ORYSJ,Q10SX2_ORYSJ P0434A03.111-2 Os07g0479400 OSNPB_070479400,Os03g0108400 LOC_Os03g01810 OsJ_09111 OSNPB_030108400 ENOG411DUIV Q9SLM8,A0A1P8AZC1 Q9SLM8_ARATH,A0A1P8AZC1_ARATH Pectin lyase-like superfamily protein (Putative polygalacturonase),Pectin lyase-like superfamily protein ARA:AT2G43880-MONOMER; 42736,35945 Pectin lyase-like superfamily protein (Putative polygalacturonase),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2043894; AT2G43880 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411DUIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione transferase (Os07g0152700 protein) B9FVJ2 B9FVJ2_ORYSJ LOC_Os07g05800 Os07g0152700 OsJ_23123 OSNPB_070152700 ENOG411DUIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411DUIU RID2 Q9LVD0 Q9LVD0_ARATH Protein carboxyl methylase-like (Putative carboxyl methylase) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g57280) FUNCTION: Essential protein (PubMed:21401745). S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(7) position of a guanine in 18S rRNA. Requires the methyltransferase adapter protein TRM112 for full rRNA methyltransferase activity. Important for biogenesis end export of the 40S ribosomal subunit independent on its methyltransferase activity (By similarity). Involved in the pre-rRNA processing steps in the nucleolus leading to small-subunit rRNA production independently of its RNA-modifying catalytic activity. Supports cell proliferation (PubMed:21401745). Required for the initiation of lateral root primordia formation and for the root apical meristem (RAM) organization as well as for leaves development (PubMed:14522871). During callus formation from hypocotyl and root explants, required for the initial stage of reactivation of cell proliferation in the hypocotyl stele (PubMed:21401745). Involved in leaf polarity establishment by functioning cooperatively with AS2 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures (PubMed:27334696). {ECO:0000250|UniProtKB:P25627, ECO:0000269|PubMed:14522871, ECO:0000269|PubMed:21401745, ECO:0000269|PubMed:27334696}. 32387 Protein carboxyl methylase-like (Putative carboxyl methylase) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g57280) nucleolus [GO:0005730]; nucleus [GO:0005634]; rRNA (guanine) methyltransferase activity [GO:0016435]; rRNA (guanine-N7)-methylation [GO:0070476]; rRNA processing [GO:0006364] locus:2165610; AT5G57280 Methyltransferase involved in Williams-Beuren syndrome Os02g0804300 protein (Putative methyltransferase),Os02g0804300 protein (Fragment) Q6K852,A0A0P0VQV7 Q6K852_ORYSJ,A0A0P0VQV7_ORYSJ Os02g0804300 OJ1548_F12.6 OsJ_08769 OSNPB_020804300 P0689B12.41,Os02g0804300 OSNPB_020804300 ENOG411DUIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fungal trichothecene efflux pump (TRI12) Os03g0363500 protein (Sugar transporter family protein, expressed),Os03g0363500 protein (Fragment) Q10L06,A0A0P0VXQ4,A0A0P0VXR6 Q10L06_ORYSJ,A0A0P0VXQ4_ORYSJ,A0A0P0VXR6_ORYSJ LOC_Os03g24860 Os03g0363500 OSNPB_030363500,Os03g0363500 OSNPB_030363500 ENOG411DUIS CCT8 Q94K05,F4JIB7 TCPQ_ARATH,F4JIB7_ARATH T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex),ATP binding protein DISRUPTION PHENOTYPE: Lethal. {ECO:0000305|PubMed:21868675}. FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Contributes to stem cell maintenance through its impact on transcription factors trafficking through plasmodesmata (PubMed:21868675). Probably involved in refolding translocated, partially unfolded proteins, including viral movement proteins (PubMed:21868675, PubMed:22476462). {ECO:0000269|PubMed:21868675, ECO:0000305|PubMed:22476462}. R-ATH-390471;R-ATH-6798695;R-ATH-6814122; 58939,19126 T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex),ATP binding protein chaperonin-containing T-complex [GO:0005832]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; positive regulation of transport [GO:0051050]; protein folding [GO:0006457],ATP binding [GO:0005524] TISSUE SPECIFICITY: Expressed in shoot meristems, root tip, vasculature and leaf epidermis. {ECO:0000269|PubMed:21868675}. locus:2095948;,locus:2138571; AT3G03960,AT4G08640 T-complex protein 1 subunit Os03g0804800 protein (Putative TCP-1/cpn60 chaperonin family protein) (T-complex protein 1, theta subunit, putative, expressed),Os11g0577932 protein Q75HJ3,A0A0P0Y3N7 Q75HJ3_ORYSJ,A0A0P0Y3N7_ORYSJ Os03g0804800 LOC_Os03g59020 Os03g0804800 OsJ_13014 OSJNBb0015I02.11 OSNPB_030804800,Os11g0577932 OSNPB_110577932 FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. ENOG411DUIP PCMP-E71 Q9SY75 PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330 51431 Putative pentatricopeptide repeat-containing protein At1g10330 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2012858; AT1G10330 Pentatricopeptide repeat-containing protein Os05g0271900 protein (cDNA clone:J033099L09, full insert sequence) Q6ATG2 Q6ATG2_ORYSJ Os05g0271900 Os05g0271900 OSJNBb0061M13.9 OSNPB_050271900 ENOG411DUIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPOC domain Os09g0298700 protein (RNA recognition motif (RRM)-containing protein-like) Q69VQ4 Q69VQ4_ORYSJ Os09g0298700 Os09g0298700 OJ1381_H04.27 OsJ_28759 OSNPB_090298700 ENOG411DUI8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os03g0439500 protein (cDNA clone:001-043-E12, full insert sequence) (cDNA clone:J013109I01, full insert sequence) (cDNA clone:J013111O20, full insert sequence),Os03g0439500 protein (Fragment),Os09g0353400 protein,Os09g0354300 protein,Os09g0354100 protein (Fragment),Os09g0353700 protein (Fragment) B7EDK8,A0A0N7KHH9,A0A0P0XKP2,A0A0P0XL48,A0A0P0XL25,A0A0N7KQM8 B7EDK8_ORYSJ,A0A0N7KHH9_ORYSJ,A0A0P0XKP2_ORYSJ,A0A0P0XL48_ORYSJ,A0A0P0XL25_ORYSJ,A0A0N7KQM8_ORYSJ Os03g0439500 Os03g0439500 OSNPB_030439500,Os03g0439500 OSNPB_030439500,Os09g0353400 OSNPB_090353400,Os09g0354300 OSNPB_090354300,Os09g0354100 OSNPB_090354100,Os09g0353700 OSNPB_090353700 ENOG411DUI9 Q9ZVA5,Q9ZVA4 EP1L4_ARATH,EP1L3_ARATH EP1-like glycoprotein 4 (Curculin-like (Mannose-binding) lectin family protein),EP1-like glycoprotein 3 (Curculin-like (Mannose-binding) lectin family protein) (Putative receptor-like protein kinase-like protein) FUNCTION: May be involved in a cell-to cell programmed cell death (PCD) signaling mechanism. {ECO:0000303|PubMed:15276441}. 49194,49051 EP1-like glycoprotein 4 (Curculin-like (Mannose-binding) lectin family protein),EP1-like glycoprotein 3 (Curculin-like (Mannose-binding) lectin family protein) (Putative receptor-like protein kinase-like protein) cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; carbohydrate binding [GO:0030246],apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; carbohydrate binding [GO:0030246] locus:2037568;,locus:2037508; AT1G78860,AT1G78850 Curculin-like mannose-binding lectin family protein NA NA NA NA NA NA NA ENOG411DUI6 SCPL51 Q67Y83,A8MR86 SCP51_ARATH,A8MR86_ARATH Serine carboxypeptidase-like 51 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. 3.4.16.- 51752,43415 Serine carboxypeptidase-like 51 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) extracellular region [GO:0005576]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expressed in seedlings, roots, flowers and siliques. {ECO:0000269|PubMed:15908604}. locus:2057873; AT2G27920 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-),Os03g0393300 protein,Os03g0393066 protein,Os03g0393700 protein,Os03g0393375 protein,Os03g0393100 protein Q10K80,Q75KN5,Q6YYX5,A0A0P0VYA8,A0A0N7KHD8,A0A0P0VZ32,A0A0P0VZ77,A0A0P0VZ46,A0A0P0VZ70 Q10K80_ORYSJ,Q75KN5_ORYSJ,Q6YYX5_ORYSJ,A0A0P0VYA8_ORYSJ,A0A0N7KHD8_ORYSJ,A0A0P0VZ32_ORYSJ,A0A0P0VZ77_ORYSJ,A0A0P0VZ46_ORYSJ,A0A0P0VZ70_ORYSJ Os03g0393700 LOC_Os03g27590 OsJ_11135 OSNPB_030393700,OSJNBa0065F09.14 LOC_Os03g27480 Os03g0392600 OsJ_11128 OSNPB_030392600,Os08g0560500 Os08g0560500 OsJ_28285 OSNPB_080560500 P0562A06.41 P0604E01.18,Os03g0393300 OSNPB_030393300,Os03g0393066 OSNPB_030393066,Os03g0393700 OSNPB_030393700,Os03g0393375 OSNPB_030393375,Os03g0393100 OSNPB_030393100 ENOG411DUI7 MEE40 Q9LFF1 PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic (Protein MATERNAL EFFECT EMBRYO ARREST 40) FUNCTION: May be involved in female gametophyte development. {ECO:0000269|PubMed:15634699}. 84551 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic (Protein MATERNAL EFFECT EMBRYO ARREST 40) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451] locus:2083976; AT3G53700 Pentatricopeptide repeat-containing protein Os11g0133200 protein (Pentatricopeptide, putative),DEAD/DEAH box helicase family protein, putative, expressed (Os03g0597200 protein) (Putative pentatricopeptide repeat protein) Q2RAY5,Q84TY4 Q2RAY5_ORYSJ,Q84TY4_ORYSJ Os11g0133200 LOC_Os11g03850 OSNPB_110133200,OSJNBa0087M10.16 LOC_Os03g40020 Os03g0597200 OSNPB_030597200 ENOG411DUI4 MDA7.6 Q9FKU4,Q2HIG7,A0A1P8B639 Q9FKU4_ARATH,Q2HIG7_ARATH,A0A1P8B639_ARATH Vesicle transport protein FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. {ECO:0000256|RuleBase:RU363111}. 24867,24141,17794 Vesicle transport protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2161800;,locus:2131448; AT5G56020,AT4G26550 transport) protein Vesicle transport protein Q5ZA38,Q69V58 Q5ZA38_ORYSJ,Q69V58_ORYSJ Os06g0300300 OsJ_21068 OSNPB_060300300 P0501G08.31,Os06g0608600 Os06g0608600 OSNPB_060608600 P0556B08.17 FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. {ECO:0000256|RuleBase:RU363111}. ENOG411DUI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chalcone synthase Chalcone synthase 8, putative (Os10g0167900 protein) (Putative chalcone synthase),Chalcone synthase 8, putative (Os10g0158400 protein) (Putative chalcone synthase),Os05g0212900 protein,Os05g0212500 protein (Putative chalcone synthase),Os07g0501100 protein (Putative Chalcone synthase) (cDNA clone:002-173-D05, full insert sequence),Os10g0168500 protein,Os10g0168300 protein (Fragment),Os10g0177300 protein (Fragment),Os05g0213100 protein,Os05g0212600 protein,Os07g0500800 protein,Os10g0162856 protein Q8LM05,Q7XGM8,Q0DJY7,Q6L4H9,Q6ZIJ3,A0A0P0XSS6,A0A0P0XS00,A0A0P0XSC7,A0A0P0WJ73,A0A0N7KKC2,A0A0P0X6H4,A0A0P0XSB0 Q8LM05_ORYSJ,Q7XGM8_ORYSJ,Q0DJY7_ORYSJ,Q6L4H9_ORYSJ,Q6ZIJ3_ORYSJ,A0A0P0XSS6_ORYSJ,A0A0P0XS00_ORYSJ,A0A0P0XSC7_ORYSJ,A0A0P0WJ73_ORYSJ,A0A0N7KKC2_ORYSJ,A0A0P0X6H4_ORYSJ,A0A0P0XSB0_ORYSJ Os10g0167900 LOC_Os10g08620 OsJ_30835 OSJNAb0015J03.16 OSNPB_100167900,LOC_Os10g07040 Os10g0158400 OsJ_30780 OSJNAa0036D19.1 OSJNBa0036D19.7 OSNPB_100158400,Os05g0212900 Os05g0212900 OsJ_17545 OSNPB_050212900,Os05g0212500 OsJ_17543 OSJNBa0074P11.14 OSJNBb0067H15.1 OSNPB_050212500,Os07g0501100 Os07g0501100 OJ1112_F06.6 OSJNBb0055I24.142 OSNPB_070501100,Os10g0168500 OSNPB_100168500,Os10g0168300 OSNPB_100168300,Os10g0177300 OSNPB_100177300,Os05g0213100 OSNPB_050213100,Os05g0212600 OSNPB_050212600,Os07g0500800 OSNPB_070500800,Os10g0162856 OSNPB_100162856 ENOG411DUI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family Os07g0558000 protein (Putative ubiquinone biosynthesis protein AarF) (cDNA clone:J033070D21, full insert sequence) Q6Z415 Q6Z415_ORYSJ Os07g0558000 Os07g0558000 OsJ_24717 OSNPB_070558000 P0567H04.5 ENOG411DUI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os12g0154000 protein (Transporter, putative, expressed) (cDNA clone:J033034I10, full insert sequence),Os12g0154000 protein,Os12g0154600 protein (Transporter, putative, expressed) (cDNA clone:J023145H12, full insert sequence) B7ERL9,Q0IQ11,Q2QXJ5 B7ERL9_ORYSJ,Q0IQ11_ORYSJ,Q2QXJ5_ORYSJ Os12g0154000 LOC_Os12g05780 OsJ_35260 OSNPB_120154000,Os12g0154000 Os12g0154000 OSNPB_120154000,Os12g0154600 LOC_Os12g05830 Os12g0154600 OsJ_35262 OSNPB_120154600 ENOG411DUI0 GB210 F4KHD8 GP210_ARATH Nuclear pore complex protein GP210 (Nuclear pore membrane glycoprotein 210) (Nucleoporin GP210) (Protein EMBRYO DEFECTIVE 3012) Embryo defective; Gametophyte defective (inferred)-D. Meinke-2004 210666 Nuclear pore complex protein GP210 (Nuclear pore membrane glycoprotein 210) (Nucleoporin GP210) (Protein EMBRYO DEFECTIVE 3012) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; nuclear pore [GO:0005643]; mRNA transport [GO:0051028]; protein transport [GO:0015031] locus:2155652; AT5G40480 nuclear pore Os09g0565450 protein,Os09g0565500 protein (Fragment) A0A0N7KRA2,A0A0P0XRC0 A0A0N7KRA2_ORYSJ,A0A0P0XRC0_ORYSJ Os09g0565450 OSNPB_090565450,Os09g0565500 OSNPB_090565500 ENOG411DUI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 71A1-like NA NA NA NA NA NA NA ENOG411EIWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WGS project CAID00000000 data contig chromosome NA NA NA NA NA NA NA ENOG411EIWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0191601 protein) Q2QWL6 Q2QWL6_ORYSJ Os12g0191601 LOC_Os12g08930 Os12g0191601 OsJ_35482 OSNPB_120191601 ENOG411EIWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411EMJ0 Q9LXC2 Q9LXC2_ARATH At5g09570 (Cox19-like CHCH family protein) (Uncharacterized protein At5g09570/F17I14_240) (Uncharacterized protein F17I14_240) 14459 At5g09570 (Cox19-like CHCH family protein) (Uncharacterized protein At5g09570/F17I14_240) (Uncharacterized protein F17I14_240) mitochondrion [GO:0005739]; nucleus [GO:0005634]; mitochondrion organization [GO:0007005] locus:2144771; AT5G09570 Has 218 Blast hits to 216 proteins in 80 species Archae - 0 NA NA NA NA NA NA NA ENOG411EMJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHCH domain NA NA NA NA NA NA NA ENOG411EMJ2 Q9FJ29 Q9FJ29_ARATH Alpha/beta-Hydrolases superfamily protein (At5g41850) 24499 Alpha/beta-Hydrolases superfamily protein (At5g41850) nucleus [GO:0005634]; hydrolase activity [GO:0016787] locus:2152960; AT5G41850 Inherit from euNOG: testis expressed 30 Os05g0214400 protein Q0DJY2 Q0DJY2_ORYSJ Os05g0214400 Os05g0214400 OSNPB_050214400 ENOG411EMJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-V Os12g0190400 protein,Os12g0191300 protein (Fragment) A0A0P0Y7R5,A0A0P0Y800 A0A0P0Y7R5_ORYSJ,A0A0P0Y800_ORYSJ Os12g0190400 OSNPB_120190400,Os12g0191300 OSNPB_120191300 ENOG411EMJ4 F3A4.70 Q9SN19 Q9SN19_ARATH At3g49990 (Low temperature viability protein) (Uncharacterized protein At3g49990/F3A4_70) (Uncharacterized protein F3A4.70) 56474 At3g49990 (Low temperature viability protein) (Uncharacterized protein At3g49990/F3A4_70) (Uncharacterized protein F3A4.70) EGO complex [GO:0034448]; late endosome membrane [GO:0031902]; nucleus [GO:0005634]; preribosome, small subunit precursor [GO:0030688]; ribosomal small subunit biogenesis [GO:0042274]; ribosomal small subunit export from nucleus [GO:0000056] locus:2083133; AT3G49990 NA NA NA NA NA NA NA NA ENOG411EMJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31) Q6EPS5 Q6EPS5_ORYSJ Os09g0283600 Os09g0283600 OSJNBa0009H03.12 OSNPB_090283600 ENOG411EMJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EMJU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EMJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein 20-like NA NA NA NA NA NA NA ENOG411EMJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411EMJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0432500 protein Q0DHX7 Q0DHX7_ORYSJ Os05g0432500 Os05g0432500 OsJ_18648 OSNPB_050432500 ENOG411EMJB PS1 B7SY83,A0A1P8AP27,A0A1P8AP42 PS1_ARATH,A0A1P8AP27_ARATH,A0A1P8AP42_ARATH FHA domain-containing protein PS1 (Protein PARALLEL SPINDLE 1) (AtPS1),Forkhead-associated (FHA) domain-containing protein DISRUPTION PHENOTYPE: Diploid pollen grains (dyads of spores instead of tetrads) due to defective meiosis II. Abnormal spindle orientation at meiosis II. {ECO:0000269|PubMed:19043546}. diploid pollen grains FUNCTION: Required for normal spindle orientation at male meiosis II and normal formation of tetrad of microspores. Not involved in female meiosis. {ECO:0000269|PubMed:19043546}. MISCELLANEOUS: Diploid male spores in sp1 mutants give rise to viable diploid pollen grains and spontaneous triploid plants in the next generation. {ECO:0000269|PubMed:19043546}. 163229,146146,162665 FHA domain-containing protein PS1 (Protein PARALLEL SPINDLE 1) (AtPS1),Forkhead-associated (FHA) domain-containing protein meiotic cell cycle [GO:0051321]; pollen development [GO:0009555] locus:505006169; AT1G34355 Inherit from NOG: Forkhead-associated domain-containing protein FHA domain-containing protein NA NA NA NA NA NA NA ENOG411EMJC Q67Y14,F4HUY1 Q67Y14_ARATH,F4HUY1_ARATH At1g34350 (Tmem18) (mRNA, clone: RAFL23-28-K18) (mRNA, clone: RAFL25-19-D04),Tmem18 19093,22006 At1g34350 (Tmem18) (mRNA, clone: RAFL23-28-K18) (mRNA, clone: RAFL25-19-D04),Tmem18 integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; callose deposition in cell wall [GO:0052543]; cell morphogenesis [GO:0000902]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860] locus:2026130; AT1G34350 transmembrane protein 18 Os08g0104100 protein (cDNA clone:001-122-G02, full insert sequence) (cDNA clone:006-311-A11, full insert sequence) Q69U50 Q69U50_ORYSJ P0015C07.37-1 Os08g0104100 OsJ_25741 OSNPB_080104100 ENOG411EMJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EMJI Q1PEQ5 Q1PEQ5_ARATH RING/U-box superfamily protein (Zinc finger protein-like protein) 34609 RING/U-box superfamily protein (Zinc finger protein-like protein) cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2091030; AT3G14250 IBR domain NA NA NA NA NA NA NA ENOG411EMJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EMJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31) Q6ERQ9,Q6ERQ8 Q6ERQ9_ORYSJ,Q6ERQ8_ORYSJ P0701F11.29-1 Os09g0419500 P0668D04.10-1 OSNPB_090419500,P0701F11.29-2 P0668D04.10-2 Os09g0419500 OSNPB_090419500 ENOG411E7SA Q93W37 Q93W37_ARATH AT5g01350/T10O8_60 (Uncharacterized protein At5g01350) (UvrABC system C protein) 8032 AT5g01350/T10O8_60 (Uncharacterized protein At5g01350) (UvrABC system C protein) locus:2179162; AT5G01350 NA OSJNBa0043L24.15 protein (Os04g0508100 protein) Q7XMA1 Q7XMA1_ORYSJ Os04g0508100 OSJNBa0043L24.15 OSNPB_040508100 ENOG411E7SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E7SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7SJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0376400 protein A0A0P0XLP1 A0A0P0XLP1_ORYSJ Os09g0376400 OSNPB_090376400 ENOG411E7SM Q94CB8,Q8S8K8 Q94CB8_ARATH,Q8S8K8_ARATH Histone deacetylase-like protein (Uncharacterized protein At2g25625),Expressed protein (Histone deacetylase-like protein) (Uncharacterized protein At2g25625) 16145,16218 Histone deacetylase-like protein (Uncharacterized protein At2g25625),Expressed protein (Histone deacetylase-like protein) (Uncharacterized protein At2g25625) locus:505006272; AT2G25625 NA NA NA NA NA NA NA NA ENOG411E7SQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E7SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7SX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0461700 protein A0A0P0VIP8 A0A0P0VIP8_ORYSJ Os02g0461700 OSNPB_020461700 ENOG411E7S2 UPI Q9ZV16,Q9ZV18,F4K627,F4IU00 Q9ZV16_ARATH,Q9ZV18_ARATH,F4K627_ARATH,F4IU00_ARATH Putative protease inhibitor (Serine protease inhibitor, potato inhibitor I-type family protein),Serine protease inhibitor, potato inhibitor I-type family protein 8069,7622,11081,9855 Putative protease inhibitor (Serine protease inhibitor, potato inhibitor I-type family protein),Serine protease inhibitor, potato inhibitor I-type family protein peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; response to wounding [GO:0009611],cell wall [GO:0005618]; peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response to fungus [GO:0050832]; response to wounding [GO:0009611],peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; defense response to insect [GO:0002213]; response to wounding [GO:0009611],peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response [GO:0006952]; response to wounding [GO:0009611] locus:2064981;,locus:2158332;,locus:2065016; AT2G38900,AT2G38870,AT5G43580 Potato inhibitor I family NA NA NA NA NA NA NA ENOG411E7S7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0852400 protein) (cDNA clone:006-203-B05, full insert sequence) Q851X5 Q851X5_ORYSJ Os03g0852400 LOC_Os03g63540 Os03g0852400 OsJ_13402 OSJNBa0015N08.26 OSNPB_030852400 ENOG411DQ0V NAC030 Q9C8W9 NAC30_ARATH NAC domain-containing protein 30 (ANAC030) (Protein VASCULAR RELATED NAC-DOMAIN 7) DISRUPTION PHENOTYPE: Defects in protoxylem vessel formation in seedling roots. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131}. FUNCTION: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (e.g. genes involved in secondary wall biosynthesis, cell wall modification such as xylan accumulation, and programmed cell death) (PubMed:20935069, PubMed:20488898, PubMed:22037706, PubMed:21284754). Involved in xylem formation in roots and shoots, especially regulating protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:16103214, PubMed:18445131, PubMed:20488898, PubMed:21498679, PubMed:21284754). Can activate the expression of several genes including XCP1, MYB46, NAC010/SND3, MYB103, MYB58, MYB63, MYB83, KNAT7, ASL19 and ASL20 (PubMed:17890373, PubMed:19088331, PubMed:18952777, PubMed:19122102, PubMed:19808805, PubMed:20935069, PubMed:21284754). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:20488898, ECO:0000269|PubMed:20935069, ECO:0000269|PubMed:21284754, ECO:0000269|PubMed:21498679, ECO:0000269|PubMed:22037706}.; FUNCTION: Required for the soilborne fungal pathogen Verticillium longisporum-induced transdifferentiation of chloroplast-containing bundle sheath cells to functional xylem elements leading to stunted growth, vein clearing, and leaf chloroses, as well as xylem hyperplasia within the vasculature of leaves, hypocotyls, and roots due to reinitiation of cambial activity and transdifferentiation of xylem parenchyma cells. This developmental reprogramming mediates also an increased drought stress tolerance. {ECO:0000269|PubMed:23023171}. 37427 NAC domain-containing protein 30 (ANAC030) (Protein VASCULAR RELATED NAC-DOMAIN 7) nucleus [GO:0005634]; identical protein binding [GO:0042802]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell wall organization [GO:0071555]; cellular response to auxin stimulus [GO:0071365]; defense response to fungus [GO:0050832]; multicellular organism development [GO:0007275]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; protoxylem development [GO:0090059]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to cytokinin [GO:0009735]; response to fungus [GO:0009620]; transcription, DNA-templated [GO:0006351]; xylan metabolic process [GO:0045491]; xylem development [GO:0010089]; xylem vessel member cell differentiation [GO:0048759] DEVELOPMENTAL STAGE: Predominantly expressed in immature xylem vessels, only in some cells just beside xylem vessels. Also present in various vascular cells of older part of the roots, near the location of emergence of the lateral roots. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131}. TISSUE SPECIFICITY: Expressed in developing protoxylems in roots and shoots (PubMed:16103214, PubMed:16581911, PubMed:17565617, PubMed:18952777). Detected in root protoxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Accumulates in the xylem but not in interfascicular fibers or pith cells in inflorescence stems. Present in developing vessels of the secondary xylem in roots undergoing secondary growth (PubMed:18952777). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:18952777}. locus:2016049; AT1G71930 NAC domain-containing protein NA NA NA NA NA NA NA ENOG411EDTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EDTU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EDTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EDTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EDTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EDTY F4JWL7,F4JWM0 F4JWL7_ARATH,F4JWM0_ARATH Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family protein FUNCTION: TIR-NB-LRR receptor-like protein involved in plant defense. Acts as a trigger of hypersensitive response (HR). Functions as guard of CAMTA3, a negative regulator of immunity, during pathogen infection. {ECO:0000269|PubMed:28407487}. 141229,137786 Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family protein ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2146228;,locus:2146253; AT5G18350,AT5G18370 Disease resistance protein NA NA NA NA NA NA NA ENOG411EDTG A0A1P8B731,F4JMQ0 A0A1P8B731_ARATH,F4JMQ0_ARATH Protein kinase superfamily protein R-ATH-674695;R-ATH-6796648; 62505,51407 Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672],nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468] locus:2127188; AT4G22940 S_TKc NA NA NA NA NA NA NA ENOG411EDTC Q9LSQ7 Q9LSQ7_ARATH Uncharacterized protein 81853 Uncharacterized protein locus:2147284; AT5G54480 Protein of unknown function (DUF630) NA NA NA NA NA NA NA ENOG411EDTB PP2A6,PP2A8,PP2A5,PP2A7,PP2-A5,PP2-A7 Q9FHE8,Q9FHE9,Q9C5Q9,Q9FHE5,A0A1P8ASP9,A8MR18,A0A1P8BA23,F4ISS7 P2A06_ARATH,P2A08_ARATH,P2A05_ARATH,P2A07_ARATH,A0A1P8ASP9_ARATH,A8MR18_ARATH,A0A1P8BA23_ARATH,F4ISS7_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 (AtPP2-A6),Protein PHLOEM PROTEIN 2-LIKE A8 (AtPP2-A8),Protein PHLOEM PROTEIN 2-LIKE A5 (AtPP2-A5),Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 (AtPP2-A7),Phloem protein 2 A5,Phloem protein 2-A7,Transmembrane receptor 44142,40106,47963,37152,33464,29327,34658,39031 Protein PHLOEM PROTEIN 2-LIKE A6 (AtPP2-A6),Protein PHLOEM PROTEIN 2-LIKE A8 (AtPP2-A8),Protein PHLOEM PROTEIN 2-LIKE A5 (AtPP2-A5),Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 (AtPP2-A7),Phloem protein 2 A5,Phloem protein 2-A7,Transmembrane receptor carbohydrate binding [GO:0030246]; signal transduction [GO:0007165],signal transduction [GO:0007165],integral component of membrane [GO:0016021]; signal transduction [GO:0007165] locus:2153217;,locus:2153212;,locus:2206255;,locus:2153222;,locus:2045427; AT5G45080,AT5G45070,AT1G65390,AT5G45090,AT2G32140 Phloem protein NA NA NA NA NA NA NA ENOG411EDTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDTK AP22.62 A0A1P8B4K1 A0A1P8B4K1_ARATH Galactose oxidase/kelch repeat superfamily protein 23669 Galactose oxidase/kelch repeat superfamily protein Kelch motif NA NA NA NA NA NA NA ENOG411EDT6 SCAMP2,SCAMP1,SCAMP4 Q9LR68,Q9SKT3,A0A1P8AMG5,A0A1P8AMJ9,A0A1P8AMF6,A0A1P8AMJ6,A0A1P8AMH4,A0A1P8AMG2 SCAM2_ARATH,SCAM1_ARATH,A0A1P8AMG5_ARATH,A0A1P8AMJ9_ARATH,A0A1P8AMF6_ARATH,A0A1P8AMJ6_ARATH,A0A1P8AMH4_ARATH,A0A1P8AMG2_ARATH Secretory carrier-associated membrane protein 2 (AtSC2) (Secretory carrier membrane protein 2),Secretory carrier-associated membrane protein 1 (AtSC1) (Secretory carrier membrane protein 1),Secretory carrier-associated membrane protein (Secretory carrier membrane protein) FUNCTION: Probably involved in membrane trafficking. {ECO:0000250}.,FUNCTION: Probably involved in membrane trafficking. {ECO:0000256|RuleBase:RU363122}. R-ATH-6798695; 31873,31963,25203,25405,27918,30120,24583,23271 Secretory carrier-associated membrane protein 2 (AtSC2) (Secretory carrier membrane protein 2),Secretory carrier-associated membrane protein 1 (AtSC1) (Secretory carrier membrane protein 1),Secretory carrier-associated membrane protein (Secretory carrier membrane protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transport vesicle membrane [GO:0030658]; protein transport [GO:0015031] locus:2020828;,locus:2051409; AT1G03550,AT2G20840 secretory carrier membrane protein NA NA NA NA NA NA NA ENOG411EDT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDT4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative undecaprenyl diphosphate synthase NA NA NA NA NA NA NA ENOG411EDT3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RHOD NA NA NA NA NA NA NA ENOG411EDT2 PLDBETA1,PLDBETA2 P93733,O23078,A0A1P8B0W4,A0A1P8B8N7,A0A1P8B8P2 PLDB1_ARATH,PLDB2_ARATH,A0A1P8B0W4_ARATH,A0A1P8B8N7_ARATH,A0A1P8B8P2_ARATH Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (EC 3.1.4.4),Phospholipase D beta 2 (AtPLDbeta2) (PLD beta 2) (EC 3.1.4.4) (PLDdelta1),Phospholipase D beta 1,Phospholipase D (EC 3.1.4.4) FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Involved in regulating stomatal movement and plant-water status (PubMed:11722757). Can use phosphatidylserine (PS) and phosphatidylethanolamine (PE) as substrates only in the presence of PIP2. Can use phosphatidylcholine (PC), phosphatidylglycerol (PG) or N-acylphosphatidylethanolamine (NAPE) as substrates in the presence of PE and PIP2 (PubMed:9578608). Modulates defense responses to bacterial and fungal pathogens (PubMed:23577648). {ECO:0000269|PubMed:11722757, ECO:0000269|PubMed:23577648, ECO:0000269|PubMed:9578608}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ARA:AT2G42010-MONOMER;MetaCyc:AT2G42010-MONOMER;,ARA:AT4G00240-MONOMER; 3.1.4.4 121101,104155,124070,87247,100338 Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (EC 3.1.4.4),Phospholipase D beta 2 (AtPLDbeta2) (PLD beta 2) (EC 3.1.4.4) (PLDdelta1),Phospholipase D beta 1,Phospholipase D (EC 3.1.4.4) cytoplasm [GO:0005737]; membrane [GO:0016020]; plasmodesma [GO:0009506]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; phospholipase D activity [GO:0004630]; defense response to bacterium, incompatible interaction [GO:0009816]; lipid catabolic process [GO:0016042]; response to cadmium ion [GO:0046686],cytoplasm [GO:0005737]; membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470],catalytic activity [GO:0003824],membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470] TISSUE SPECIFICITY: Expressed in stems, and to a lower amount in leaves, flowers and siliques. {ECO:0000269|PubMed:10198096}. locus:2064607;,locus:2126001; AT2G42010,AT4G00240 phospholipase d NA NA NA NA NA NA NA ENOG411EDT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain Os07g0674100 protein A0A0P0XAB6 A0A0P0XAB6_ORYSJ Os07g0674100 OSNPB_070674100 ENOG411EDT0 GSTU3 Q9ZW28 GSTU3_ARATH Glutathione S-transferase U3 (AtGSTU3) (EC 2.5.1.18) (GST class-tau member 3) (Glutathione S-transferase 21) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT2G29470-MONOMER; 2.5.1.18 25941 Glutathione S-transferase U3 (AtGSTU3) (EC 2.5.1.18) (GST class-tau member 3) (Glutathione S-transferase 21) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2043007; AT2G29470 Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EDT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411DQ08 CHR18 A0A1P8AQC0,A0A1P8AQE4,A0A1P8AQF7,F4HWU9 A0A1P8AQC0_ARATH,A0A1P8AQE4_ARATH,A0A1P8AQF7_ARATH,F4HWU9_ARATH Chromatin remodeling factor18 56988,75569,70955,75074 Chromatin remodeling factor18 ATP binding [GO:0005524] locus:2007775; AT1G48310 SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein Os07g0636200 protein (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a-like) (cDNA clone:J013169J18, full insert sequence),Os07g0636200 protein (Fragment) Q69WP6,A0A0P0XA16,A0A0P0X9J3 Q69WP6_ORYSJ,A0A0P0XA16_ORYSJ,A0A0P0X9J3_ORYSJ OJ1136_D11.106 Os07g0636200 OSNPB_070636200,Os07g0636200 OSNPB_070636200 ENOG411E5SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Acyltransferase NA NA NA NA NA NA NA ENOG411E5SF Q67Y04 Q67Y04_ARATH At5g17610 (Uncharacterized protein At5g17610) 13741 At5g17610 (Uncharacterized protein At5g17610) endoplasmic reticulum [GO:0005783] locus:2151426; AT5G17610 NA NA NA NA NA NA NA NA ENOG411E5SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0524100 protein (Fragment) Q0DGM2 Q0DGM2_ORYSJ Os05g0524100 Os05g0524100 OSNPB_050524100 ENOG411E5SD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0581700 protein (cDNA clone:002-140-A12, full insert sequence) Q6L5E1 Q6L5E1_ORYSJ Os05g0581700 Os05g0581700 OJ1651_G11.4 OSJNBa0017N18.22 OSNPB_050581700 ENOG411E5SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Expressed protein (Os03g0407100 protein),Os07g0613800 protein (Fragment) Q84MQ2,A0A0P0X8U3 Q84MQ2_ORYSJ,A0A0P0X8U3_ORYSJ OSJNBa0030J19.19 OSJNBa0002D18.10 LOC_Os03g29360 Os03g0407100 OSNPB_030407100,Os07g0613800 OSNPB_070613800 ENOG411E5SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os06g0727000 protein (cDNA clone:002-139-A09, full insert sequence) Q5Z7P5 Q5Z7P5_ORYSJ Os06g0727000 Os06g0727000 OsJ_22720 OSNPB_060727000 P0017G10.15 ENOG411E5SA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 1U2 (OsCASPL1U2) Q2R0D1 CSPLK_ORYSJ Os11g0649700 LOC_Os11g42970 OsJ_01639 ENOG411E5SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0507700 protein) Q2QQ43 Q2QQ43_ORYSJ Os12g0507700 LOC_Os12g32290 Os12g0507700 OsJ_36233 OSNPB_120507700 ENOG411E5SM Q9C819,Q8LDV4 Q9C819_ARATH,Q8LDV4_ARATH Uncharacterized protein F19K6.11,At4g28310 (Microtubule-associated protein) (Uncharacterized protein At4g28310) 14881,23080 Uncharacterized protein F19K6.11,At4g28310 (Microtubule-associated protein) (Uncharacterized protein At4g28310) locus:2018129;,locus:2123698; AT1G52270,AT4G28310 NA Os06g0115700 protein Q8H663,Q5VRL1 Q8H663_ORYSJ,Q5VRL1_ORYSJ OSJNBa0019F11.18-1 Os06g0115700 OSNPB_060115700,Os06g0115700 Os06g0115700 OsJ_19904 OSJNBa0019F11.18-2 OSNPB_060115700 ENOG411E5SK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E5SJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0248440 protein A0A0P0VH14 A0A0P0VH14_ORYSJ Os02g0248440 OSNPB_020248440 ENOG411E5SI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA kDa class I heat shock NA NA NA NA NA NA NA ENOG411E5SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E5SW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os04g0667600 protein (Fragment) Q0J984 Q0J984_ORYSJ Os04g0667600 Os04g0667600 OSNPB_040667600 ENOG411E5SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0321600 protein (cDNA clone:002-139-F04, full insert sequence) Q6ER70 Q6ER70_ORYSJ Os02g0321600 Os02g0321600 OsJ_06478 OSJNBa0073A18.24 OSNPB_020321600 ENOG411E5SU Q67Z56,Q6NQ32,A0A1I9LQU9 Q67Z56_ARATH,Q6NQ32_ARATH,A0A1I9LQU9_ARATH Uncharacterized protein At3g24750,At3g24750,Uncharacterized protein 19193,18481,29765 Uncharacterized protein At3g24750,At3g24750,Uncharacterized protein locus:2087313; AT3G24750 NA NA NA NA NA NA NA NA ENOG411E5ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein disulfide oxidoreductase activity Glutaredoxin-C1 Q7G8Y5 GRXC1_ORYSJ GRXC1 Os01g0368900 LOC_Os01g27140 B1329D01.42 OsJ_01785 P0043B10.28 P0560B06.28 P0784G04.35 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E5SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E5SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF822) NA NA NA NA NA NA NA ENOG411E5SQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) Os01g0219500 protein (cDNA clone:002-115-F10, full insert sequence) (cDNA clone:002-118-C09, full insert sequence) Q0JPJ4 Q0JPJ4_ORYSJ Os01g0219500 Os01g0219500 OSNPB_010219500 ENOG411E5SP IAA29 Q93WC4,A0A1P8B7Q2,A0A1P8B7S3 IAA29_ARATH,A0A1P8B7Q2_ARATH,A0A1P8B7S3_ARATH Auxin-responsive protein IAA29 (Indoleacetic acid-induced protein 29),Auxin-responsive protein FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 28610,23511,22384 Auxin-responsive protein IAA29 (Indoleacetic acid-induced protein 29),Auxin-responsive protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; response to far red light [GO:0010218]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2116505; AT4G32280 AUX/IAA family NA NA NA NA NA NA NA ENOG411E5SZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0165500 protein (cDNA clone:002-154-F04, full insert sequence) Q6F2S7 Q6F2S7_ORYSJ Os05g0165500 OsJ_17256 OSJNBa0027N19.15 OSNPB_050165500 ENOG411E5SY atpE P09468 ATPE_ARATH ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit) FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. {ECO:0000255|HAMAP-Rule:MF_00530}. 14499 ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; thylakoid [GO:0009579]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986] locus:504954670; ATCG00470 Produces ATP from ADP in the presence of a proton gradient across the membrane (By similarity) ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit) P0C2Z3 ATPE_ORYSJ atpE Nip060 FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. {ECO:0000255|HAMAP-Rule:MF_00530}. MISCELLANEOUS: A stretch of the chloroplast genome is duplicated within chromosomes 1 and 6, resulting in the duplication of the gene. The expression of these duplicated genes (Os01g0790900 and Os06g0120500 respectively) has not been demonstrated. ENOG411E5SX O22169,F4IV24 O22169_ARATH,F4IV24_ARATH Axoneme-associated protein MST101(2) protein (Uncharacterized protein At2g44820),Axoneme-associated protein MST101(2) protein 21241,23445 Axoneme-associated protein MST101(2) protein (Uncharacterized protein At2g44820),Axoneme-associated protein MST101(2) protein nucleolus [GO:0005730]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2042406; AT2G44820 NA Os01g0224500 protein (cDNA clone:002-156-E09, full insert sequence) Q5NAG6 Q5NAG6_ORYSJ Os01g0224500 Os01g0224500 OsJ_00944 OSNPB_010224500 P0417G05.37 P0492F05.3 ENOG411E5S7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0782100 protein,Os02g0729300 protein,Os04g0525400 protein,Os03g0782000 protein,Os03g0199940 protein,Os08g0470540 protein,Os10g0535550 protein,Os06g0666300 protein,Os07g0515200 protein,Os01g0697325 protein,Os02g0746400 protein,Os04g0298501 protein,Os07g0625100 protein,Os04g0596100 protein,Os04g0298400 protein B9F609,Q0DXW9,B9FG84,B9F608,A0A0P0VU94,A0A0P0XH15,A0A0P0XWL9,A0A0P0WZW0,A0A0P0X6P7,A0A0P0V6Y2,A0A0P0VQ03,A0A0P0W8J2,A0A0P0X910,A0A0N7KJL9,A0A0P0W891 B9F609_ORYSJ,Q0DXW9_ORYSJ,B9FG84_ORYSJ,B9F608_ORYSJ,A0A0P0VU94_ORYSJ,A0A0P0XH15_ORYSJ,A0A0P0XWL9_ORYSJ,A0A0P0WZW0_ORYSJ,A0A0P0X6P7_ORYSJ,A0A0P0V6Y2_ORYSJ,A0A0P0VQ03_ORYSJ,A0A0P0W8J2_ORYSJ,A0A0P0X910_ORYSJ,A0A0N7KJL9_ORYSJ,A0A0P0W891_ORYSJ Os03g0782100 OsJ_12826 OSNPB_030782100,Os02g0729300 Os02g0729300 OSNPB_020729300,Os04g0525400 OsJ_15519 OSNPB_040525400,Os03g0782000 OsJ_12825 OSNPB_030782000,Os03g0199940 OSNPB_030199940,Os08g0470540 OSNPB_080470540,Os10g0535550 OSNPB_100535550,Os06g0666300 OSNPB_060666300,Os07g0515200 OSNPB_070515200,Os01g0697325 OSNPB_010697325,Os02g0746400 OSNPB_020746400,Os04g0298501 OSNPB_040298501,Os07g0625100 OSNPB_070625100,Os04g0596100 OSNPB_040596100,Os04g0298400 OSNPB_040298400 ENOG411E5S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stage II sporulation protein E (SpoIIE) NA NA NA NA NA NA NA ENOG411E5S5 Q9SGW9 Q9SGW9_ARATH At1g64450 (F1N19.3) (Glycine-rich protein family) (Uncharacterized protein At1g64450) (Uncharacterized protein F15H21.17) 35891 At1g64450 (F1N19.3) (Glycine-rich protein family) (Uncharacterized protein At1g64450) (Uncharacterized protein F15H21.17) integral component of membrane [GO:0016021] locus:2014250; AT1G64450 Inherit from euNOG: Sporozoite surface protein 2 NA NA NA NA NA NA NA ENOG411E5S4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MviN-like protein NA NA NA NA NA NA NA ENOG411E5S3 ZFP5 Q39264 ZFP5_ARATH Zinc finger protein 5 DISRUPTION PHENOTYPE: Reduced trichome production on sepals, cauline leaves, paraclades and main inflorescence stems. Reduced number and size of root hairs, due to reduced growth rate. {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22762888}. FUNCTION: Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22301962, ECO:0000269|PubMed:22762888}. MISCELLANEOUS: Plants over-expressing ZFP5 show formation of ectopic trichomes on carpels and other inflorescence organs. {ECO:0000305|PubMed:21803862}. 23590 Zinc finger protein 5 nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cytokinin-activated signaling pathway [GO:0009736]; ethylene-activated signaling pathway [GO:0009873]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; root hair elongation [GO:0048767]; root hair initiation [GO:0048766]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Highly expressed in roots, young leaves, developing stems, branches, inflorescence meristems, floral meristems and siliques. Expressed at low levels in rosette and cauline leaves. {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22762888}. locus:2194599; AT1G10480 zinc finger protein NA NA NA NA NA NA NA ENOG411E5S2 DI19-7,DI19-4,HRB1 Q9FJ17,Q8VXU6,G0XQD4,F4JC45 DI197_ARATH,DI194_ARATH,G0XQD4_ARATH,F4JC45_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 (AtDi19-7) (Protein HYPERSENSITIVE TO RED AND BLUE 1),Protein DEHYDRATION-INDUCED 19 homolog 4 (AtDi19-4),Drought-responsive family protein (ZZ),Drought-responsive family protein DISRUPTION PHENOTYPE: Plants show a hypersensitive hypocotyl growth response to both red and blue light. {ECO:0000269|PubMed:15705950}. FUNCTION: Involved in both red and blue light signaling. {ECO:0000269|PubMed:15705950}. 23495,24650,22893,25869 Protein DEHYDRATION-INDUCED 19 homolog 7 (AtDi19-7) (Protein HYPERSENSITIVE TO RED AND BLUE 1),Protein DEHYDRATION-INDUCED 19 homolog 4 (AtDi19-4),Drought-responsive family protein (ZZ),Drought-responsive family protein nucleus [GO:0005634]; blue light signaling pathway [GO:0009785]; red light signaling pathway [GO:0010161],perinuclear region of cytoplasm [GO:0048471] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16786289}. locus:2155934;,locus:2083363; AT5G49230,AT3G06760 Pfam:Di19 NA NA NA NA NA NA NA ENOG411E5S1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0041 NA NA NA NA NA NA NA ENOG411E5S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0608800 protein) (cDNA clone:J023086B22, full insert sequence) Q10GY6 Q10GY6_ORYSJ Os03g0608800 LOC_Os03g41229 Os03g0608800 OSNPB_030608800 ENOG411E5S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein light chain type 1 NA NA NA NA NA NA NA ENOG411E5S8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DY6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os06g0707000 protein (Putative HGA1) (Xylan xylosyltransferase 1),Os08g0446550 protein (Fragment),Os06g0246400 protein (Fragment) Q5Z8T8,A0A0P0XGF2,A0A0P0WUZ5 Q5Z8T8_ORYSJ,A0A0P0XGF2_ORYSJ,A0A0P0WUZ5_ORYSJ Os06g0707000 XYXT1 OsJ_22601 OSNPB_060707000 P0018H04.33 P0621D05.21,Os08g0446550 OSNPB_080446550,Os06g0246400 OSNPB_060246400 ENOG411DY6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0655400 protein A0A0P0WFT4 A0A0P0WFT4_ORYSJ Os04g0655400 OSNPB_040655400 ENOG411DY6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Os01g0303100 protein (Putative class III chitinase) (cDNA clone:001-103-G12, full insert sequence) Q657I8 Q657I8_ORYSJ Os01g0303100 Os01g0303100 B1146F03.32 OSNPB_010303100 ENOG411DY6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium-binding EGF domain Os02g0807800 protein (Putative wall-associated serine/threonine kinase) (cDNA, clone: J065212B02, full insert sequence),Os12g0266200 protein (Wall-associated kinase-like 1, putative, expressed) (cDNA clone:J013066I06, full insert sequence),Os09g0561600 protein (Putative wall-associated kinase 4),Os09g0561400 protein,Os09g0561482 protein,Os09g0561500 protein,Os09g0561000 protein,Os09g0561450 protein Q6K9B1,Q2QUE3,Q653C9,A0A0P0XQ95,A0A0P0XQC9,A0A0N7KR97,A0A0P0XR73,A0A0P0XQF5 Q6K9B1_ORYSJ,Q2QUE3_ORYSJ,Q653C9_ORYSJ,A0A0P0XQ95_ORYSJ,A0A0P0XQC9_ORYSJ,A0A0N7KR97_ORYSJ,A0A0P0XR73_ORYSJ,A0A0P0XQF5_ORYSJ Os02g0807800 OJ1520_C09.11 OSNPB_020807800,LOC_Os12g16540 Os12g0266200 OSNPB_120266200,Os09g0561600 Os09g0561600 OsJ_30341 OSNPB_090561600 P0635G10.17,Os09g0561400 OSNPB_090561400,Os09g0561482 OSNPB_090561482,Os09g0561500 OSNPB_090561500,Os09g0561000 OSNPB_090561000,Os09g0561450 OSNPB_090561450 ENOG411DY6Q Q9LPS9,A0A1P8AVL1 PRNL1_ARATH,A0A1P8AVL1_ARATH Pirin-like protein At1g50590,RmlC-like cupins superfamily protein R-ATH-8935690; 34547,26104 Pirin-like protein At1g50590,RmlC-like cupins superfamily protein nucleus [GO:0005634] locus:2008091; AT1G50590 pirin-like protein Os09g0484800 protein (cDNA clone:002-120-F07, full insert sequence) Q0J0T5 Q0J0T5_ORYSJ Os09g0484800 Os09g0484800 OSNPB_090484800 ENOG411DY6W CPR30 Q9SU30,Q9SUY0,A0A1P8B5B5 CPR30_ARATH,FB244_ARATH,A0A1P8B5B5_ARATH F-box protein CPR30 (Protein CONSTITUTIVE EXPRESSER OF PR GENES 30),F-box protein At4g22390,F-box associated ubiquitination effector family protein DISRUPTION PHENOTYPE: Temperature dependent; normal at high temperature (above 28 degrees Celsius), but in colder temperature, dwarf morphology, constitutive resistance to the bacterial pathogen Pseudomonas syringae, and induction of defense-response gene expression such as PR-30. {ECO:0000269|PubMed:19682297}. dwarf; elevated defense response; phenotype is temperature dependent. Dwarf; Severe chlorosis; Resistant to bacterial infection-G. Wang-2009 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling. {ECO:0000250, ECO:0000269|PubMed:19682297}. PATHWAY: Protein modification; protein ubiquitination. 47259,46189,46002 F-box protein CPR30 (Protein CONSTITUTIVE EXPRESSER OF PR GENES 30),F-box protein At4g22390,F-box associated ubiquitination effector family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; negative regulation of defense response [GO:0031348]; negative regulation of protein catabolic process [GO:0042177]; plant-type hypersensitive response [GO:0009626]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] TISSUE SPECIFICITY: Expressed in seedling, root, stem, leaves, inflorescence and silique, especially in veins and trichomes. {ECO:0000269|PubMed:19682297}. locus:2135615;,locus:2127465; AT4G12560,AT4G22390 FBOX NA NA NA NA NA NA NA ENOG411DY6T P0C042,Q9MA24,A0A1P8B2W0,F4IQ97 Y4597_ARATH,Q9MA24_ARATH,A0A1P8B2W0_ARATH,F4IQ97_ARATH Uncharacterized protein At4g15970,Glycosyltransferase (Nucleotide-diphospho-sugar transferase family protein) (T5E21.9),Nucleotide-diphospho-sugar transferase family protein 43011,44414,45427,46650 Uncharacterized protein At4g15970,Glycosyltransferase (Nucleotide-diphospho-sugar transferase family protein) (T5E21.9),Nucleotide-diphospho-sugar transferase family protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; transferase activity [GO:0016740]; RNA modification [GO:0009451],transferase activity [GO:0016740] locus:2204508;,locus:4515102789; AT4G15970,AT1G14590,AT2G02061 Nucleotide-diphospho-sugar transferase Os02g0686300 protein,Glycosyltransferase (EC 2.4.2.-) Q0DYK5,A0A0P0WE02 Q0DYK5_ORYSJ,A0A0P0WE02_ORYSJ Os02g0686300 Os02g0686300 OSNPB_020686300,Os04g0585400 OSNPB_040585400 ENOG411E1H6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycolipid transfer protein (GLTP) Os08g0108700 protein Q6ZC75 Q6ZC75_ORYSJ Os08g0108700 Os08g0108700 OsJ_25771 OSNPB_080108700 P0007D08.5 P0450B04.40 ENOG411E1H7 UMAMIT16-psi Q9FNA5,F4JRS9 WTR39_ARATH,F4JRS9_ARATH WAT1-related protein At5g13670,Nodulin MtN21 /EamA-like transporter family protein 41469,30235 WAT1-related protein At5g13670,Nodulin MtN21 /EamA-like transporter family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid export [GO:0032973]; amino acid homeostasis [GO:0080144]; amino acid import [GO:0043090] locus:2173189;,locus:2117368; AT5G13670,AT4G24980 Nodulin MtN21 NA NA NA NA NA NA NA ENOG411E1H4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E1H5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0719900 protein A0A0P0V7I2 A0A0P0V7I2_ORYSJ Os01g0719900 OSNPB_010719900 ENOG411E1H2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E1H3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF547 Os06g0692800 protein (Ternary complex factor MIP1-like),Os02g0153000 protein (Ternary complex factor MIP1-like) Q5Z663,Q67IU1 Q5Z663_ORYSJ,Q67IU1_ORYSJ Os06g0692800 Os06g0692800 OSNPB_060692800 P0532H03.36 P0550B04.6,Os02g0153000 OSNPB_020153000 P0463E12.12 ENOG411E1H0 Q9SNB7,F4K6R8 PP264_ARATH,F4K6R8_ARATH Pentatricopeptide repeat-containing protein At3g46610,Pentatricopeptide repeat (PPR) superfamily protein 75175,26948 Pentatricopeptide repeat-containing protein At3g46610,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2075165;,locus:2145668; AT3G46610,AT5G14350 Pentatricopeptide repeat-containing protein Os12g0283900 protein Q0INW5 Q0INW5_ORYSJ Os12g0283900 Os12g0283900 OSNPB_120283900 ENOG411E1H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Cyclin-D5-1 (G1/S-specific cyclin-D5-1) (CycD5;1),Os03g0617500 protein (Fragment) Q0DQA9,A0A0P0W081 CCD51_ORYSJ,A0A0P0W081_ORYSJ CYCD5-1 Os03g0617500 LOC_Os03g42070 OSJNBa0063J18.4,Os03g0617500 OSNPB_030617500 ENOG411E1H8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411E1H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E1HW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp33 protein NA NA NA NA NA NA NA ENOG411E1HT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2985) NA NA NA NA NA NA NA ENOG411E1HR MJK13.19 Q9LDW4,Q9LSR5 Q9LDW4_ARATH,Q9LSR5_ARATH Expressed protein (MJK13.19 protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At5g54400 (Gb|AAF35419.1) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g54400) 32088,32443 Expressed protein (MJK13.19 protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At5g54400 (Gb|AAF35419.1) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g54400) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2090111;,locus:2147289; AT3G15530,AT5G54400 ubiE/COQ5 methyltransferase family NA NA NA NA NA NA NA ENOG411E1HS T8M16_10 Q9LET8 Q9LET8_ARATH AT3g56680/T8M16_10 (Single-stranded nucleic acid binding R3H protein) (Uncharacterized protein T8M16_10) 40228 AT3g56680/T8M16_10 (Single-stranded nucleic acid binding R3H protein) (Uncharacterized protein T8M16_10) nucleic acid binding [GO:0003676] locus:2103550; AT3G56680 Inherit from KOG: R3h domain containing Os05g0411600 protein Q84PA5 Q84PA5_ORYSJ Os05g0411600 OsJ_18537 OSNPB_050411600 ENOG411E1HP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor Os09g0521300 protein (Transcription factor-like) Q650T3 Q650T3_ORYSJ Os09g0521300 OsJ_17424 OSNPB_090521300 P0669G04.20 ENOG411E1HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os06g0150550 protein (Os06g0150600 protein) (Putative hydroxycinnamoyl transferase) (cDNA clone:001-114-B08, full insert sequence) Q5VML3 Q5VML3_ORYSJ Os06g0150600 Os06g0150550 OsJ_20143 OSNPB_060150600 P0529C07.2 P0710H01.14 ENOG411E1HF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA vacuolar iron transporter homolog 4-like NA NA NA NA NA NA NA ENOG411E1HG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAS ETEA protein-like (Os09g0482000 protein) Q69QQ7 Q69QQ7_ORYSJ Os09g0482000 OSNPB_090482000 P0463D04.31 ENOG411E1HB MES7 O80472 MES7_ARATH Methylesterase 7 (AtMES7) (EC 3.1.1.-) FUNCTION: Methylesterase shown to have carboxylesterase activity, methyl indole-3-acetic acid (MeIAA) esterase activity and methyl salicylate (MeSA) esterase activity in vitro. Required to convert methyl salicylate (MeSA) to salicylic acid (SA) as part of the signal transduction pathways that activate systemic acquired resistance in systemic tissue. MeSA is believed to be an inactive form that needs to be demethylated to exert a biological effect. {ECO:0000269|PubMed:18467465, ECO:0000269|PubMed:18643994}. MISCELLANEOUS: Expression of MES7 can restore systemic acquired resistance in SAR-deficient tobacco plants. ARA:AT2G23560-MONOMER; 3.1.1.- 28823 Methylesterase 7 (AtMES7) (EC 3.1.1.-) hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl salicylate esterase activity [GO:0080031]; defense response to fungus, incompatible interaction [GO:0009817]; salicylic acid metabolic process [GO:0009696]; systemic acquired resistance [GO:0009627] locus:2046793; AT2G23560 alpha/beta hydrolase fold Os01g0557100 protein (Putative salicylic acid-binding protein 2),Os01g0557200 protein (Putative salicylic acid-binding protein 2),Os01g0355800 protein Q8S0V0,Q8S0U8,A0A0N7KCX9 Q8S0V0_ORYSJ,Q8S0U8_ORYSJ,A0A0N7KCX9_ORYSJ Os01g0557100 Os01g0557100 B1144D11.7 OJ1014_G12.33 OsJ_02210 OSNPB_010557100,Os01g0557200 B1144D11.9 OJ1014_G12.35 OsJ_02211 OSNPB_010557200,Os01g0355800 OSNPB_010355800 ENOG411E1HC ATL4 Q9LY41 ATL4_ARATH E3 ubiquitin-protein ligase ATL4 (EC 2.3.2.27) (Protein ARABIDOPSIS TOXICOS EN LEVADURA 4) (Protein ATL4) (RING-H2 finger X1a) (RING-H2 zinc finger protein ATL4) (RING-H2 zinc finger protein RHX1a) (RING-type E3 ubiquitin transferase ATL4) FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. {ECO:0000269|PubMed:15644464}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 36562 E3 ubiquitin-protein ligase ATL4 (EC 2.3.2.27) (Protein ARABIDOPSIS TOXICOS EN LEVADURA 4) (Protein ATL4) (RING-H2 finger X1a) (RING-H2 zinc finger protein ATL4) (RING-H2 zinc finger protein RHX1a) (RING-type E3 ubiquitin transferase ATL4) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567] locus:2081907; AT3G60220 E3 ubiquitin-protein ligase OSJNBa0013K16.19 protein (OSJNBb0016D16.1 protein) (Os04g0586700 protein) (cDNA clone:001-116-C07, full insert sequence) Q7XP48 Q7XP48_ORYSJ Os04g0586700 Os04g0586700 OSJNBa0013K16.19 OSJNBb0016D16.1 OSNPB_040586700 ENOG411E1HA MYB9,AtMYB9 F4KE69,Q9LFE1 F4KE69_ARATH,Q9LFE1_ARATH Myb domain protein 9,Myb domain protein 9 (Putative transcription factor (MYB9)) 38080,36778 Myb domain protein 9,Myb domain protein 9 (Putative transcription factor (MYB9)) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737],DNA binding [GO:0003677] locus:2149000; AT5G16770 Transcription factor NA NA NA NA NA NA NA ENOG411E1HM P92523 M860_ARATH Uncharacterized mitochondrial protein AtMg00860 (ORF158) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07682) is not demonstrated. 17979 Uncharacterized mitochondrial protein AtMg00860 (ORF158) mitochondrion [GO:0005739] locus:504954569; ATMG00860 Retrotransposon protein Os04g0191000 protein (Fragment),Os05g0296332 protein,Os01g0640100 protein (Fragment),Os09g0375700 protein (Fragment),Os12g0499990 protein,Os12g0499932 protein,Os12g0121200 protein A0A0P0W7K0,A0A0N7KKH0,A0A0N7KDE1,A0A0N7KQP6,A0A0P0YAQ9,A0A0P0YB17,A0A0P0Y6D9 A0A0P0W7K0_ORYSJ,A0A0N7KKH0_ORYSJ,A0A0N7KDE1_ORYSJ,A0A0N7KQP6_ORYSJ,A0A0P0YAQ9_ORYSJ,A0A0P0YB17_ORYSJ,A0A0P0Y6D9_ORYSJ Os04g0191000 OSNPB_040191000,Os05g0296332 OSNPB_050296332,Os01g0640100 OSNPB_010640100,Os09g0375700 OSNPB_090375700,Os12g0499990 OSNPB_120499990,Os12g0499932 OSNPB_120499932,Os12g0121200 OSNPB_120121200 ENOG411E1HK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os12g0490100 protein C7J9P2 C7J9P2_ORYSJ Os12g0490100 Os12g0490100 OSNPB_120490100 ENOG411E6IX GG3,AGG3 Q6AWT8,A0A1P8BCC8 GG3_ARATH,A0A1P8BCC8_ARATH Guanine nucleotide-binding protein subunit gamma 3 (Ggamma-subunit 3) (Heterotrimeric G protein gamma-subunit 3) (AtAGG3),Guanine nucleotide-binding protein subunit gamma DISRUPTION PHENOTYPE: Leaves with a roundish shape as well as rounder and smaller flowers. {ECO:0000269|PubMed:22209167}. FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. {ECO:0000269|PubMed:22209167}. 27157,22360 Guanine nucleotide-binding protein subunit gamma 3 (Ggamma-subunit 3) (Heterotrimeric G protein gamma-subunit 3) (AtAGG3),Guanine nucleotide-binding protein subunit gamma heterotrimeric G-protein complex [GO:0005834]; plasma membrane [GO:0005886]; signal transducer activity [GO:0004871]; G-protein coupled receptor signaling pathway [GO:0007186]; response to abscisic acid [GO:0009737],heterotrimeric G-protein complex [GO:0005834]; signal transducer activity [GO:0004871]; G-protein coupled receptor signaling pathway [GO:0007186] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:22209167}. locus:504954807; AT5G20635 NA NA NA NA NA NA NA NA ENOG411EBZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAAX protease self-immunity NA NA NA NA NA NA NA ENOG411EBZ3 Q9M9L1,F4J9K3,F4J9K4 Q9M9L1_ARATH,F4J9K3_ARATH,F4J9K4_ARATH MADS-box transcription factor family protein (Putative DNA-binding protein),MADS-box transcription factor family protein 29182,30416,23739 MADS-box transcription factor family protein (Putative DNA-binding protein),MADS-box transcription factor family protein nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2074494; AT3G05860 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EBZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411EBZ1 Q6DYE2 Q6DYE2_ARATH Plant/protein (DUF793) 47848 Plant/protein (DUF793) integral component of membrane [GO:0016021] locus:2194681; AT1G43630 Protein of unknown function (DUF793) NA NA NA NA NA NA NA ENOG411EBZ0 GTE5,GTE3 Q8H1D7,Q9S7T1,A0A1P8AMI1 GTE5_ARATH,GTE3_ARATH,A0A1P8AMI1_ARATH Transcription factor GTE5, chloroplastic (Bromodomain-containing protein GTE5) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E5),Transcription factor GTE3, chloroplastic (Bromodomain-containing protein GTE3) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E3),Global transcription factor group E3 FUNCTION: Probable transcription factor that binds to acetylated histone H3. {ECO:0000269|PubMed:18502747}. 53455,50812,48309 Transcription factor GTE5, chloroplastic (Bromodomain-containing protein GTE5) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E5),Transcription factor GTE3, chloroplastic (Bromodomain-containing protein GTE3) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E3),Global transcription factor group E3 chloroplast [GO:0009507]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2030958;,locus:2032692; AT1G17790,AT1G73150 BROMO NA NA NA NA NA NA NA ENOG411EBZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2921) Os07g0580700 protein,Os02g0460000 protein Q0D558,A0A0P0VIT7 Q0D558_ORYSJ,A0A0P0VIT7_ORYSJ Os07g0580700 Os07g0580700 OSNPB_070580700,Os02g0460000 OSNPB_020460000 ENOG411EBZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAR Os06g0225000 protein (Small GTP-binding protein) Q67UH2 Q67UH2_ORYSJ Os06g0225000 Os06g0225000 OSNPB_060225000 P0638H11.40 P0690H04.1 ENOG411EBZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411EBZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBZK Q9LJE9 Q9LJE9_ARATH RING/U-box superfamily protein R-ATH-983168; 35236 RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2092895; AT3G13430 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EBZJ REM17 Q84WP3,A0A1P8AVZ8,A0A1P8AVY9,A0A1P8AVZ6,A0A1P8AVV7,A0A1P8AW16 REM17_ARATH,A0A1P8AVZ8_ARATH,A0A1P8AVY9_ARATH,A0A1P8AVZ6_ARATH,A0A1P8AVV7_ARATH,A0A1P8AW16_ARATH B3 domain-containing protein REM17 (Protein REPRODUCTIVE MERISTEM 17),Transcriptional factor B3 family protein 104833,92512,92282,113090,84255,93710 B3 domain-containing protein REM17 (Protein REPRODUCTIVE MERISTEM 17),Transcriptional factor B3 family protein chloroplast [GO:0009507]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2200620; AT1G26680 Transcriptional factor B3 family protein NA NA NA NA NA NA NA ENOG411EBZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA homeobox-leucine zipper protein NA NA NA NA NA NA NA ENOG411EBZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein NA NA NA NA NA NA NA ENOG411EBZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-5 cytosine-specific DNA methylase DNA (cytosine-5)-methyltransferase DRM1A (EC 2.1.1.37) (Protein DOMAINS REARRANGED METHYLASE 1A) (OsDRM1A) Q2RBJ4 DRM1A_ORYSJ DRM1A Os11g0109200 LOC_Os11g01810 FUNCTION: Involved in de novo DNA methylation. Involved in RNA-directed DNA methylation (RdDM). {ECO:0000250|UniProtKB:Q10SU5}. ENOG411EBZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAAX protease self-immunity Os09g0436800 protein (Fragment) A0A0P0XM94 A0A0P0XM94_ORYSJ Os09g0436800 OSNPB_090436800 ENOG411EBZD ANAC011 Q9LQK5 Q9LQK5_ARATH F5D14.30 protein (NAC domain containing protein 11) 32872 F5D14.30 protein (NAC domain containing protein 11) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2033745; AT1G32510 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EBZY IKU2 Q9LJM4 IKU2_ARATH Receptor-like protein kinase HAIKU2 (EC 2.7.11.1) The methionine-derived glucosinolate content was reduced to 53% in the leaves. Meanwhile the level of free methionine was increased for about five-fold. Extremely high level of S-methylmethione the main transport form of methionine was found in the seeds.,Small seed phenotype similar to iku2-3 Embryo defective; Cotyledon-A. Chaudhury-2007 FUNCTION: Modulates the seed size by negatively regulating the cellularization of syncytial endosperm. {ECO:0000269|PubMed:12692325, ECO:0000269|PubMed:16293693}. 2.7.11.1 110475 Receptor-like protein kinase HAIKU2 (EC 2.7.11.1) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; endosperm development [GO:0009960] TISSUE SPECIFICITY: Expressed in the endosperm of fertilized ovules. {ECO:0000269|PubMed:16293693}. locus:2091206; AT3G19700 STYKc NA NA NA NA NA NA NA ENOG411EBZX ERS2 P93825 ERS2_ARATH Ethylene response sensor 2 (AtERS2) (EC 2.7.11.-) (Protein ERS2) FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling. 2.7.11.- 72192 Ethylene response sensor 2 (AtERS2) (EC 2.7.11.-) (Protein ERS2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ethylene binding [GO:0051740]; metal ion binding [GO:0046872]; phosphorelay sensor kinase activity [GO:0000155]; protein serine/threonine kinase activity [GO:0004674]; receptor activity [GO:0004872]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of ethylene-activated signaling pathway [GO:0010105] TISSUE SPECIFICITY: Expressed in etiolated seedlings, leaves, roots and stems. Highly expressed in flowers, stamens, pollen cells, tapetum cells, carpels and ovules. {ECO:0000269|PubMed:9707532}. locus:2018259; AT1G04310 GAF domain NA NA NA NA NA NA NA ENOG411EBZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glycosyltransferase CAZy family GT2 NA NA NA NA NA NA NA ENOG411EBZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0373400 protein (Ribosomal protein-like) (cDNA clone:002-174-C01, full insert sequence),Os01g0549300 protein (Fragment),Os12g0226232 protein,Os08g0178900 protein (Fragment) Q5ZCV7,A0A0N7KD49,A0A0P0Y8C4,A0A0P0XCK0 Q5ZCV7_ORYSJ,A0A0N7KD49_ORYSJ,A0A0P0Y8C4_ORYSJ,A0A0P0XCK0_ORYSJ Os01g0373400 Os01g0373400 B1039D07.38 B1045D11.16 OsJ_01812 OSNPB_010373400,Os01g0549300 OSNPB_010549300,Os12g0226232 OSNPB_120226232,Os08g0178900 OSNPB_080178900 ENOG411EBZU MRB1 Q94AL2,A0A1P8B952 Q94AL2_ARATH,A0A1P8B952_ARATH Transmembrane protein, putative (DUF3537) (Uncharacterized protein At4g22270),Transmembrane protein, putative (DUF3537) 49794,49725 Transmembrane protein, putative (DUF3537) (Uncharacterized protein At4g22270),Transmembrane protein, putative (DUF3537) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; organ growth [GO:0035265]; regulation of cell division [GO:0051302],integral component of membrane [GO:0016021] locus:2132045; AT4G22270 Protein of unknown function (DUF3537) NA NA NA NA NA NA NA ENOG411EBZT FUT4,FUT6,FUT10,FUT5 Q9SJP2,Q9XI80,Q9SJP6,Q9SJP4 FUT4_ARATH,FUT6_ARATH,FUT10_ARATH,FUT5_ARATH Probable fucosyltransferase 4 (AtFUT4) (EC 2.4.1.-),Fucosyltransferase 6 (AtFUT6) (EC 2.4.1.-),Putative fucosyltransferase 10 (AtFUT10) (EC 2.4.1.-),Probable fucosyltransferase 5 (AtFUT5) (EC 2.4.1.-) FUNCTION: May be involved in cell wall biosynthesis. May act as a fucosyltransferase. PATHWAY: Protein modification; protein glycosylation. ARA:AT2G15390-MONOMER;,ARA:AT1G14080-MONOMER;,ARA:AT2G15350-MONOMER;,ARA:AT2G15370-MONOMER; 2.4.1.- 61484,61191,59329,61173 Probable fucosyltransferase 4 (AtFUT4) (EC 2.4.1.-),Fucosyltransferase 6 (AtFUT6) (EC 2.4.1.-),Putative fucosyltransferase 10 (AtFUT10) (EC 2.4.1.-),Probable fucosyltransferase 5 (AtFUT5) (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; alpha-(1,2)-fucosyltransferase activity [GO:0031127]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; response to salt stress [GO:0009651]; xyloglucan biosynthetic process [GO:0009969],Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969],Golgi apparatus [GO:0005794]; membrane [GO:0016020]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969],Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and seedlings.,TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:11743104}.,TISSUE SPECIFICITY: Expressed in root, leaves, stems and seedlings. {ECO:0000269|PubMed:11743104}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. locus:2047208;,locus:2047193;,locus:2047173; AT2G15390,AT1G14080,AT2G15350,AT2G15370 Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411EGYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0730050 protein A0A0P0VNZ4 A0A0P0VNZ4_ORYSJ Os02g0730050 OSNPB_020730050 ENOG411EGYC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA polymerase NA NA NA NA NA NA NA ENOG411EGYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EGYN F4J924 F4J924_ARATH Ulp1 protease family protein (DUF1985) 46119 Ulp1 protease family protein (DUF1985) peptidase activity [GO:0008233] locus:2098607; AT3G31910 NA NA NA NA NA NA NA NA ENOG411EGYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGYK Q9SH17 Q9SH17_ARATH F28K19.4 (RING/U-box superfamily protein) 21010 F28K19.4 (RING/U-box superfamily protein) cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630] locus:2029506; AT1G77830 RING NA NA NA NA NA NA NA ENOG411EGYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein phosphatase 2C NA NA NA NA NA NA NA ENOG411EGYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYW Q9ZVT3 Q9ZVT3_ARATH F15K9.8 24685 F15K9.8 locus:2014490; AT1G03320 NA NA NA NA NA NA NA NA ENOG411EGYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Adenosine/AMP deaminase NA NA NA NA NA NA NA ENOG411EGYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: phospholipase D family member 6 NA NA NA NA NA NA NA ENOG411EGYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stress responsive A/B Barrel Domain NA NA NA NA NA NA NA ENOG411EGYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGYZ Q9SJ65 Q9SJ65_ARATH Transmembrane protein (Uncharacterized protein At2g35850) 9183 Transmembrane protein (Uncharacterized protein At2g35850) integral component of membrane [GO:0016021] locus:2039285; AT2G35850 NA NA NA NA NA NA NA NA ENOG411EGYY Q1G3Y9 Q1G3Y9_ARATH Uncharacterized protein 9428 Uncharacterized protein locus:4515102669; AT1G52342 NA NA NA NA NA NA NA NA ENOG411EGYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0542400 protein,Os03g0767650 protein A0A0P0YB23,A0A0P0W3H7 A0A0P0YB23_ORYSJ,A0A0P0W3H7_ORYSJ Os12g0542400 OSNPB_120542400,Os03g0767650 OSNPB_030767650 ENOG411EGY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411EGY6 MCD7.25,F5D14.4 Q9FM83,Q9LQN1 Q9FM83_ARATH,Q9LQN1_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (F5D14.4) (Uncharacterized protein F27G20_3) 12225,12026 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (F5D14.4) (Uncharacterized protein F27G20_3) locus:2161108;,locus:2028341; AT5G56480,AT1G32280 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EGY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Binding-protein-dependent transport system inner membrane component NA NA NA NA NA NA NA ENOG411EGY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EGY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGY0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EGY9 Q9LJ63 Q9LJ63_ARATH At3g19030/K13E13_15 (Transcription initiation factor TFIID subunit 1b-like protein) 6521 At3g19030/K13E13_15 (Transcription initiation factor TFIID subunit 1b-like protein) translation initiation factor activity [GO:0003743] locus:2085899; AT3G19030 NA NA NA NA NA NA NA NA ENOG411EGY8 Q56XA0 Q56XA0_ARATH Avr9/Cf-9 rapidly elicited protein 9132 Avr9/Cf-9 rapidly elicited protein locus:1009023143; AT1G32928 Inherit from euNOG: Avr9 Cf-9 rapidly elicited protein 65 NA NA NA NA NA NA NA ENOG411EJPY MCK7.28 Q9FGI1,A0A1P8BEG9 LTN1_ARATH,A0A1P8BEG9_ARATH E3 ubiquitin-protein ligase listerin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase listerin),HEAT/U-box domain-containing protein FUNCTION: E3 ubiquitin-protein ligase. Component of the ribosome quality control complex (RQC), a ribosome-associated complex that mediates ubiquitination and extraction of incompletely synthesized nascent chains for proteasomal degradation. Ubiquitination leads to CDC48 recruitment for extraction and degradation of the incomplete translation product. {ECO:0000250|UniProtKB:O94822, ECO:0000250|UniProtKB:Q04781}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 208744,207421 E3 ubiquitin-protein ligase listerin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase listerin),HEAT/U-box domain-containing protein cytosol [GO:0005829]; transferase activity [GO:0016740]; zinc ion binding [GO:0008270]; protein ubiquitination [GO:0016567],zinc ion binding [GO:0008270] locus:2161238; AT5G58410 E3 ubiquitin-protein ligase Os01g0977600 protein (Zinc finger protein-like),Os01g0977600 protein,Os01g0977600 protein (Fragment) Q5JNB3,A0A0P0VDJ4,A0A0P0VDJ0 Q5JNB3_ORYSJ,A0A0P0VDJ4_ORYSJ,A0A0P0VDJ0_ORYSJ P0020E09.22-1 Os01g0977600 OSNPB_010977600,Os01g0977600 OSNPB_010977600 ENOG411EJP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integrase core domain NA NA NA NA NA NA NA ENOG411EJP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTMZ PUB39,PUB41,PUB38,PUB40 Q9STT1,Q0WUF6,Q9FJP6,Q9FL17 PUB39_ARATH,PUB41_ARATH,PUB38_ARATH,PUB40_ARATH U-box domain-containing protein 39 (EC 2.3.2.27) (Plant U-box protein 39) (RING-type E3 ubiquitin transferase PUB39),U-box domain-containing protein 41 (EC 2.3.2.27) (Plant U-box protein 41) (RING-type E3 ubiquitin transferase PUB41),U-box domain-containing protein 38 (EC 2.3.2.27) (Plant U-box protein 38) (RING-type E3 ubiquitin transferase PUB38),U-box domain-containing protein 40 (EC 2.3.2.27) (Plant U-box protein 40) (RING-type E3 ubiquitin transferase PUB40) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 55102,60464,61778,60218 U-box domain-containing protein 39 (EC 2.3.2.27) (Plant U-box protein 39) (RING-type E3 ubiquitin transferase PUB39),U-box domain-containing protein 41 (EC 2.3.2.27) (Plant U-box protein 41) (RING-type E3 ubiquitin transferase PUB41),U-box domain-containing protein 38 (EC 2.3.2.27) (Plant U-box protein 38) (RING-type E3 ubiquitin transferase PUB38),U-box domain-containing protein 40 (EC 2.3.2.27) (Plant U-box protein 40) (RING-type E3 ubiquitin transferase PUB40) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842],cytoplasm [GO:0005737]; nucleus [GO:0005634]; transmembrane receptor protein serine/threonine kinase binding [GO:0070696]; ubiquitin-protein transferase activity [GO:0004842]; protein ubiquitination [GO:0016567] locus:2100372;,locus:2154124;,locus:2171810;,locus:2173742; AT3G47820,AT5G62560,AT5G65200,AT5G40140 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q67VC1,Q6H593,Q67VB9 Q67VC1_ORYSJ,Q6H593_ORYSJ,Q67VB9_ORYSJ Os06g0238000 OSJNBa0052G07.5 OSJNBa0068B06.14 OSNPB_060238000,Os09g0386200 OSJNBa0048A13.13 OSNPB_090386200,Os06g0238200 OSJNBa0052G07.7 OSJNBa0068B06.16 OSNPB_060238200 ENOG411DTMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0631600 protein) Q2QLR4 Q2QLR4_ORYSJ Os12g0631600 LOC_Os12g43580 OSNPB_120631600 ENOG411DTMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DSPc NA NA NA NA NA NA NA ENOG411DTMW Q9LV22,Q9LV23,Q84WJ6 Q9LV22_ARATH,Q9LV23_ARATH,Q84WJ6_ARATH Glycosyltransferase (Glycosyltransferase family 61 protein),Glycosyltransferase family 61 protein,At3g18170 (Glycosyltransferase) (Glycosyltransferase family 61 protein) (Uncharacterized protein At3g18170) 53188,60812,43795 Glycosyltransferase (Glycosyltransferase family 61 protein),Glycosyltransferase family 61 protein,At3g18170 (Glycosyltransferase) (Glycosyltransferase family 61 protein) (Uncharacterized protein At3g18170) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],transferase activity, transferring glycosyl groups [GO:0016757] locus:2092762;,locus:2092757; AT3G18180,AT3G18170 glycosyltransferase Os02g0330200 protein (Putative HGA6),Glycosyltransferase, putative, expressed (Os03g0567600 protein) (cDNA clone:J013002A01, full insert sequence),Os03g0567600 protein (Fragment),Os01g0119100 protein Q6ZFR0,Q10I20,A0A0P0VZE2,A0A0P0UXB1 Q6ZFR0_ORYSJ,Q10I20_ORYSJ,A0A0P0VZE2_ORYSJ,A0A0P0UXB1_ORYSJ Os02g0330200 Os02g0330200 OJ1116_E03.2 OsJ_06523 OSNPB_020330200,OSJNBa0026A15.4 LOC_Os03g37010 Os03g0567600 OsJ_11476 OSNPB_030567600,Os03g0567600 OSNPB_030567600,Os01g0119100 OSNPB_010119100 ENOG411DTMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os08g0514000 protein,Os08g0514066 protein A0A0P0XI97,A0A0N7KQ49 A0A0P0XI97_ORYSJ,A0A0N7KQ49_ORYSJ Os08g0514000 OSNPB_080514000,Os08g0514066 OSNPB_080514066 ENOG411DTMU MNS3 Q93Y37,A0A1P8AM79 MNS3_ARATH,A0A1P8AM79_ARATH Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 (EC 3.2.1.113),alpha-1,2-Mannosidase (EC 3.2.1.-) DISRUPTION PHENOTYPE: Formation of aberrant N-glycan structures. {ECO:0000269|PubMed:20023195}. FUNCTION: Class I alpha-mannosidase essential for early N-glycan processing. Removes preferentially alpha-1,2-linked mannose residues from Man(9)GlcNAc(2) to produce Man(8)GlcNAc(2). Involved in root development and cell wall biosynthesis. {ECO:0000269|PubMed:20023195}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT1G30000-MONOMER; R-ATH-901032; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 3.2.1.113,3.2.1.- 69069,71071 Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 (EC 3.2.1.113),alpha-1,2-Mannosidase (EC 3.2.1.-) endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; alpha-mannosidase activity [GO:0004559]; calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]; N-glycan processing [GO:0006491]; protein glycosylation [GO:0006486],membrane [GO:0016020]; calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in flowers, siliques, stems, leaves, roots, stamens and sepals. {ECO:0000269|PubMed:20023195}. locus:2198299; AT1G30000 mannosyl-oligosaccharide 12-alpha-mannosidase alpha-1,2-Mannosidase (EC 3.2.1.-) Q0DK00 Q0DK00_ORYSJ Os05g0209100 Os05g0209100 OSNPB_050209100 ENOG411DTMT FRG5,EDA16 C0SUU4,A0A1P8AM17,A0A1P8AM22,F4I7D3,F4I7D2,B3H7C1 C0SUU4_ARATH,A0A1P8AM17_ARATH,A0A1P8AM22_ARATH,F4I7D3_ARATH,F4I7D2_ARATH,B3H7C1_ARATH SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein (Uncharacterized protein At1g11100) (Fragment),SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 140378,120146,124848,135676,140390,112924 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein (Uncharacterized protein At1g11100) (Fragment),SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872],ATP binding [GO:0005524]; helicase activity [GO:0004386] locus:2197344; AT1G11100,AT1G61140 domain-containing protein NA NA NA NA NA NA NA ENOG411DTMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glycerol-3-phosphate acyltransferase Os03g0735900 protein A0A0P0W305 A0A0P0W305_ORYSJ Os03g0735900 OSNPB_030735900 ENOG411DTMP HEN2 Q9ZVW2 HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10 (EC 3.6.4.13) (Protein HUA ENHANCER 2) DISRUPTION PHENOTYPE: When combined with mutations in HUA1 and HUA2, reduced stem elongation and alterations in production of flowers along the inflorescence. These flowers are characterized by the presence of third whorl sepal-petal-stamens and fourth whorl sepal-carpels leading to abnormal floral organ number and positioning. Over-accumulation of non-coding nuclear exososome targets (PubMed:25144737). {ECO:0000269|PubMed:11923195, ECO:0000269|PubMed:25144737}. FUNCTION: ATP-dependent RNA helicase that associates with the RNA exosome complex, with the cap binding complex (CBC) and with the NEXT-like complex. Involved in the degradation of a large number of non-coding nuclear exosome substrates such as snoRNA and miRNA precursors, incompletely spliced mRNAs, and spurious transcripts produced from pseudogenes and intergenic regions (PubMed:25144737). Involved in the maintenance of homeotic B and C gene expression in the reproductive whorls. Regulates floral organ spacing and identity, probably through the regulation of protein synthesis or mRNA degradation (PubMed:11923195). {ECO:0000269|PubMed:11923195, ECO:0000269|PubMed:25144737}. R-ATH-6791226; 3.6.4.13 111889 DExH-box ATP-dependent RNA helicase DExH10 (EC 3.6.4.13) (Protein HUA ENHANCER 2) cytosol [GO:0005829]; nuclear speck [GO:0016607]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; Ski complex [GO:0055087]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; mRNA processing [GO:0006397]; negative regulation of posttranscriptional gene silencing [GO:0060149]; nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [GO:0070478]; RNA metabolic process [GO:0016070]; specification of floral organ identity [GO:0010093] DEVELOPMENTAL STAGE: Expressed in specific patterns in the inflorescence meristem and developing flowers. Present throughout the inflorescence meristem and in young floral meristems through stage 4. Around stage 5, present within the developing organs of the inner three whorls but absent from sepals. At later stage of floral development, present at a low level in the gynoecium but accumulate strongly in developing ovules. {ECO:0000269|PubMed:11923195}. TISSUE SPECIFICITY: Expressed in inflorescences, leaves, stems, and roots. {ECO:0000269|PubMed:11923195}. locus:2063648; AT2G06990 Superkiller viralicidic activity 2-like DEAD/DEAH box helicase family protein, expressed (HUA enhancer 2) (Os11g0176200 protein),Os11g0176200 protein (Fragment) Q53PH9,A0A0P0XZA0 Q53PH9_ORYSJ,A0A0P0XZA0_ORYSJ Os11g0176200 LOC_Os11g07500 Os11g0176200 OsJ_33162 OSNPB_110176200,Os11g0176200 OSNPB_110176200 ENOG411DTMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0682400 protein (Rust resistance protein Rp1-dp8, putative),Os01g0608400 protein,Os11g0682501 protein,Os11g0682600 protein (Fragment) Q2QZL3,A0A0P0V530,A0A0P0Y5U5,A0A0P0Y5E7 Q2QZL3_ORYSJ,A0A0P0V530_ORYSJ,A0A0P0Y5U5_ORYSJ,A0A0P0Y5E7_ORYSJ Os11g0682400 LOC_Os11g45600 OsJ_34795 OSNPB_110682400,Os01g0608400 OSNPB_010608400,Os11g0682501 OSNPB_110682501,Os11g0682600 OSNPB_110682600 ENOG411DTMM Q9LN69 PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290 101860 Putative pentatricopeptide repeat-containing protein At1g19290 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2016427; AT1G19290 Pentatricopeptide repeat-containing protein Os05g0275100 protein B9FNL7 B9FNL7_ORYSJ Os05g0275100 OsJ_17878 OSNPB_050275100 ENOG411DTMK Q9C7U5,Q9ZU91,A0A1P8AXY5,A8MRK0 E132_ARATH,E133_ARATH,A0A1P8AXY5_ARATH,A8MRK0_ARATH Glucan endo-1,3-beta-glucosidase 2 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 2) ((1->3)-beta-glucanase 2) (Beta-1,3-endoglucanase 2) (Beta-1,3-glucanase 2),Glucan endo-1,3-beta-glucosidase 3 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 3) ((1->3)-beta-glucanase 3) (Beta-1,3-endoglucanase 3) (Beta-1,3-glucanase 3),O-Glycosyl hydrolases family 17 protein ARA:AT1G66250-MONOMER;,ARA:AT2G01630-MONOMER; 3.2.1.39 54206,53992,47553,42563 Glucan endo-1,3-beta-glucosidase 2 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 2) ((1->3)-beta-glucanase 2) (Beta-1,3-endoglucanase 2) (Beta-1,3-glucanase 2),Glucan endo-1,3-beta-glucosidase 3 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 3) ((1->3)-beta-glucanase 3) (Beta-1,3-endoglucanase 3) (Beta-1,3-glucanase 3),O-Glycosyl hydrolases family 17 protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2205298;,locus:2065403; AT1G66250,AT2G01630 glucan endo-1-3-beta-glucosidase Glucan endo-1,3-beta-glucosidase 3, putative, expressed (Os03g0221500 protein) (Putative beta-1,3-glucanase) (cDNA clone:002-117-H02, full insert sequence) (cDNA clone:J033120F09, full insert sequence) Q8H822 Q8H822_ORYSJ OJ1743A09.5 LOC_Os03g12140 Os03g0221500 OsJ_09957 OSNPB_030221500 ENOG411DTMJ KEA5,KEA6,KEA4 Q8VYR9,B5X0N6,Q9ZUN3,F4KDC7 KEA5_ARATH,KEA6_ARATH,KEA4_ARATH,F4KDC7_ARATH K(+) efflux antiporter 5 (AtKEA5),K(+) efflux antiporter 6 (AtKEA6),K(+) efflux antiporter 4 (AtKEA4),K+ efflux antiporter 5 FUNCTION: K(+)/H(+) antiporter involved in K(+) homeostasis and osmotic adjustment. {ECO:0000269|PubMed:24278440}. 61598,64392,64249,61270 K(+) efflux antiporter 5 (AtKEA5),K(+) efflux antiporter 6 (AtKEA6),K(+) efflux antiporter 4 (AtKEA4),K+ efflux antiporter 5 integral component of membrane [GO:0016021]; membrane [GO:0016020]; inorganic cation transmembrane transporter activity [GO:0022890]; solute:proton antiporter activity [GO:0015299]; potassium ion transport [GO:0006813],integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299] TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:24278440}. locus:2165326;,locus:2181910;,locus:2050382; AT5G51710,AT5G11800,AT2G19600 ) efflux antiporter Os03g0127900 protein,Os06g0561200 protein (Putative Potassium-efflux system protein),Os03g0127950 protein (Fragment) Q0DVI9,Q5Z8T1,A0A0P0VSU1 Q0DVI9_ORYSJ,Q5Z8T1_ORYSJ,A0A0P0VSU1_ORYSJ Os03g0127900 Os03g0127900 OSNPB_030127900,Os06g0561200 Os06g0561200 OSNPB_060561200 P0456F09.9,Os03g0127950 OSNPB_030127950 ENOG411DTMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Os05g0403400 protein,Os05g0403600 protein (cDNA clone:J023150H08, full insert sequence) Q6AUK9,Q6AUK8 Q6AUK9_ORYSJ,Q6AUK8_ORYSJ Os05g0403400 OSJNBb0006J12.12 OSNPB_050403400,Os05g0403600 OsJ_18493 OSJNBb0006J12.13 OSNPB_050403600 ENOG411DTMH Q9M2A1 PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630 47722 Pentatricopeptide repeat-containing protein At3g42630 chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial respiratory chain complex IV biogenesis [GO:0097034]; positive regulation of mitochondrial translational initiation [GO:0070134]; RNA modification [GO:0009451] locus:2096544; AT3G42630 Pentatricopeptide repeat-containing protein Os08g0520200 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6YZW3 Q6YZW3_ORYSJ Os08g0520200 OJ1003_A09.11 OSNPB_080520200 P0689E12.35 ENOG411DTMG POL2A,POL2B,TIL1,TIL2 F4HW04,F4IFN6,A0A1P8AV03,A0A1P8B2B9,A0A1P8B2E1 DPOE1_ARATH,DPOE2_ARATH,A0A1P8AV03_ARATH,A0A1P8B2B9_ARATH,A0A1P8B2E1_ARATH DNA polymerase epsilon catalytic subunit A (EC 2.7.7.7) (DNA polymerase 2 a) (AtPOL2a) (DNA polymerase II subunit a) (Protein ABA OVERLY SENSITIVE a) (Protein EARLY IN SHORT DAYS 7) (Protein EMBRYO DEFECTIVE 142) (Protein EMBRYO DEFECTIVE 2284) (Protein EMBRYO DEFECTIVE 529) (Protein TILTED 1),DNA polymerase epsilon catalytic subunit B (EC 2.7.7.7) (DNA polymerase 2 b) (AtPOL2b) (DNA polymerase II subunit b) (Protein TILTED 2),DNA polymerase epsilon catalytic subunit DISRUPTION PHENOTYPE: Lethal, with sporophytic embryo-defective with an arrest at the globular stage during embryo development. Abnormal cell division characterized by several rounds of mitosis with aberrant planes of division. {ECO:0000269|PubMed:16212602, ECO:0000269|PubMed:16278345, ECO:0000269|PubMed:19947980}.,DISRUPTION PHENOTYPE: No visible effects. When associated with heterozygote POL2A disruption; lethal, with sporophytic embryo-defective with an arrest at the globular stage during embryo development. When associated with esd7-1 mutation of POL2A; very early flowering. {ECO:0000269|PubMed:16212602, ECO:0000269|PubMed:16278345, ECO:0000269|PubMed:19947980}. Early flowering.,Twenty-five percent of embryos show abnormal cell divisions during embryogenesis-large cells- decreased rate of cell division. Division of the hypohyseal cell abnormal leading to abnormal placement of the root pole. Homozygotes show delayed flowering abnormal floraly phyllotaxy and abnormal ovules. Null: Embryo defective; Globular; Knockdown: Dwarf; Small, narrow leaves; Small flowers; Early flowering independent of photoperiod-D. Meinke-2002 FUNCTION: DNA polymerase II, which participates in chromosomal DNA replication. Required for the timing and determination of cell fate during plant embryogenesis and root pole development, by promoting cell cycle and cell type patterning. Necessary for proper shoot (SAM) and root apical meristem (RAM) functions. Involved in maintaining epigenetic states, controlling hypersensitive response (HR), and mediating abscisic acid (ABA) signaling. Required for flowering repression through a mechanism involving epigenetic gene silencing. May participate in processes involved in chromatin-mediated cellular memory. {ECO:0000269|PubMed:16212602, ECO:0000269|PubMed:16278345, ECO:0000269|PubMed:19244142, ECO:0000269|PubMed:19947980}.,FUNCTION: DNA polymerase II, which participates in chromosomal DNA replication (By similarity). Involved in the determination of cell fate during plant embryogenesis. Contributes to the flowering time repression. {ECO:0000250, ECO:0000269|PubMed:16212602, ECO:0000269|PubMed:16278345, ECO:0000269|PubMed:19947980}. R-ATH-174430;R-ATH-68952;R-ATH-68962; 2.7.7.7 248897,244993,243376,245130,245363 DNA polymerase epsilon catalytic subunit A (EC 2.7.7.7) (DNA polymerase 2 a) (AtPOL2a) (DNA polymerase II subunit a) (Protein ABA OVERLY SENSITIVE a) (Protein EARLY IN SHORT DAYS 7) (Protein EMBRYO DEFECTIVE 142) (Protein EMBRYO DEFECTIVE 2284) (Protein EMBRYO DEFECTIVE 529) (Protein TILTED 1),DNA polymerase epsilon catalytic subunit B (EC 2.7.7.7) (DNA polymerase 2 b) (AtPOL2b) (DNA polymerase II subunit b) (Protein TILTED 2),DNA polymerase epsilon catalytic subunit apoplast [GO:0048046]; epsilon DNA polymerase complex [GO:0008622]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; nucleotide binding [GO:0000166]; single-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008310]; zinc ion binding [GO:0008270]; base-excision repair, gap-filling [GO:0006287]; DNA replication proofreading [GO:0045004]; embryonic root morphogenesis [GO:0010086]; leading strand elongation [GO:0006272]; mitotic cell cycle [GO:0000278]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; nucleotide-excision repair, DNA gap filling [GO:0006297]; regulation of cell division [GO:0051302],epsilon DNA polymerase complex [GO:0008622]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; nucleotide binding [GO:0000166]; single-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008310]; zinc ion binding [GO:0008270]; base-excision repair, gap-filling [GO:0006287]; DNA replication proofreading [GO:0045004]; leading strand elongation [GO:0006272]; mitotic cell cycle [GO:0000278]; nucleotide-excision repair, DNA gap filling [GO:0006297],epsilon DNA polymerase complex [GO:0008622]; 3'-5' exonuclease activity [GO:0008408]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; nucleotide binding [GO:0000166]; zinc ion binding [GO:0008270]; DNA repair [GO:0006281]; DNA replication [GO:0006260] DEVELOPMENTAL STAGE: Present in actively dividing cells such as root and shoot meristematic regions, young leaves and stems, inflorescences and siliques. {ECO:0000269|PubMed:19947980}. TISSUE SPECIFICITY: Mostly expressed at low levels in inflorescence (floral meristem and flowers until anthesis), and, to a lower extent, in roots, seeds and leaves. {ECO:0000269|PubMed:16278345, ECO:0000269|PubMed:19947980}.,TISSUE SPECIFICITY: Mostly expressed at low levels in inflorescence (floral meristem and flowers until anthesis), and, to a lower extent, in seeds. {ECO:0000269|PubMed:16278345}. locus:2199973;,locus:2059314; AT1G08260,AT2G27120 DNA polymerase Os02g0511901 protein,Os02g0511900 protein A0A0P0VJF3,A0A0P0VJF5 A0A0P0VJF3_ORYSJ,A0A0P0VJF5_ORYSJ Os02g0511901 OSNPB_020511901,Os02g0511900 OSNPB_020511900 ENOG411DTMF NAC061 Q9M290,B3H506 NAC61_ARATH,B3H506_ARATH Putative NAC domain-containing protein 61 (ANAC061),NAC domain containing protein 61 25304,26924 Putative NAC domain-containing protein 61 (ANAC061),NAC domain containing protein 61 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2100212; AT3G44350 containing protein NAC-domain containing protein 90, putative, expressed (No apical meristem (NAM) protein, putative) (Os11g0154500 protein) (cDNA clone:002-154-A12, full insert sequence),No apical meristem protein, expressed (Os12g0156100 protein) Q53QG7,Q2QXH9 Q53QG7_ORYSJ,Q2QXH9_ORYSJ LOC_Os11g05610 LOC_Os11g05614 Os11g0154500 OsJ_33009 OSNPB_110154500,Os12g0156100 LOC_Os12g05990 Os12g0156100 OSNPB_120156100 ENOG411DTME Q93VS5,F4JSC0,F4JN04,F4JSB9 Q93VS5_ARATH,F4JSC0_ARATH,F4JN04_ARATH,F4JSB9_ARATH AT4g18900/F13C5_70 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At4g18905),Transducin/WD40 repeat-like superfamily protein 54425,55235,47731,51085 AT4g18900/F13C5_70 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At4g18905),Transducin/WD40 repeat-like superfamily protein nucleus [GO:0005634] locus:505006497;,locus:2122133;,locus:2117169; AT4G18905,AT4G35370,AT4G18900 Transducin family protein WD-40 repeat family Os06g0502600 protein,Beta transducin-like protein HET-E2C-like (Os01g0924300 protein) (cDNA clone:J023122G10, full insert sequence),Os01g0924300 protein (Fragment) Q652X2,Q5JJP8,A0A0P0VCB7 Q652X2_ORYSJ,Q5JJP8_ORYSJ,A0A0P0VCB7_ORYSJ OSJNBa0075M17.19 Os06g0502600 OSNPB_060502600,Os01g0924300 B1033B05.5 OsJ_04598 OSNPB_010924300 P0592G05.29,Os01g0924300 OSNPB_010924300 ENOG411DTMD BHLH101,BHLH100,ORG2,ORG3 Q9FYE6,Q9ZVB5,Q9M1K1,Q9M1K0,A0A1P8BBW3 BH101_ARATH,BH100_ARATH,ORG2_ARATH,ORG3_ARATH,A0A1P8BBW3_ARATH Transcription factor bHLH101 (Basic helix-loop-helix protein 101) (AtbHLH101) (bHLH 101) (Transcription factor EN 10) (bHLH transcription factor bHLH101),Transcription factor bHLH100 (Basic helix-loop-helix protein 100) (AtbHLH100) (bHLH 100) (Transcription factor EN 7) (bHLH transcription factor bHLH100),Transcription factor ORG2 (Basic helix-loop-helix protein 38) (AtbHLH38) (bHLH 38) (OBP3-responsive gene 2) (Transcription factor EN 8) (bHLH transcription factor bHLH038),Transcription factor ORG3 (Basic helix-loop-helix protein 39) (AtbHLH39) (bHLH 39) (OBP3-responsive gene 3) (Transcription factor EN 9) (bHLH transcription factor bHLH039),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein FUNCTION: Plays a role in metal homeostasis. Confers tolerance to high zinc (Zn) and nickel (Ni). {ECO:0000269|PubMed:18088336}. 27717,27217,28714,29004,27732 Transcription factor bHLH101 (Basic helix-loop-helix protein 101) (AtbHLH101) (bHLH 101) (Transcription factor EN 10) (bHLH transcription factor bHLH101),Transcription factor bHLH100 (Basic helix-loop-helix protein 100) (AtbHLH100) (bHLH 100) (Transcription factor EN 7) (bHLH transcription factor bHLH100),Transcription factor ORG2 (Basic helix-loop-helix protein 38) (AtbHLH38) (bHLH 38) (OBP3-responsive gene 2) (Transcription factor EN 8) (bHLH transcription factor bHLH038),Transcription factor ORG3 (Basic helix-loop-helix protein 39) (AtbHLH39) (bHLH 39) (OBP3-responsive gene 3) (Transcription factor EN 9) (bHLH transcription factor bHLH039),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion starvation [GO:0010106]; iron ion homeostasis [GO:0055072]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion starvation [GO:0010106]; iron ion homeostasis [GO:0055072]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and stems. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed in vascular tissues. Detected in roots. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:18296723}. locus:2146663;,locus:2040287;,locus:2080600;,locus:2080615; AT5G04150,AT2G41240,AT3G56970,AT3G56980 Transcription factor NA NA NA NA NA NA NA ENOG411DTMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance Os03g0579900 protein (Fragment),Os03g0579200 protein Q0DQM5,A0A0P0W0G4 Q0DQM5_ORYSJ,A0A0P0W0G4_ORYSJ Os03g0579900 Os03g0579900 OSNPB_030579900,Os03g0579200 OSNPB_030579200 ENOG411DTMB F4JP95 F4JP95_ARATH Polyketide cyclase / dehydrase and lipid transport protein 29034 Polyketide cyclase / dehydrase and lipid transport protein mitochondrion [GO:0005739]; ubiquinone binding [GO:0048039]; cellular respiration [GO:0045333]; ubiquinone biosynthetic process [GO:0006744] locus:2129321; AT4G17650 Coenzyme Q-binding protein COQ10 homolog Aromatic-rich family protein-like (Os01g0772400 protein) Q5N8Y6 Q5N8Y6_ORYSJ Os01g0772400 OSNPB_010772400 P0695H10.17 ENOG411DTMA Q8VY97,Q84JM6 Y4213_ARATH,Q84JM6_ARATH ER membrane protein complex subunit 7 homolog,ER membrane protein complex subunit-like protein (DUF2012) (Uncharacterized protein At2g25310) 22563,23428 ER membrane protein complex subunit 7 homolog,ER membrane protein complex subunit-like protein (DUF2012) (Uncharacterized protein At2g25310) endoplasmic reticulum [GO:0005783]; ER membrane protein complex [GO:0072546]; carbohydrate binding [GO:0030246] locus:2116642;,locus:2059521; AT4G32130,AT2G25310 Protein of unknown function (DUF2012) Os06g0644100 protein (cDNA clone:006-204-B01, full insert sequence) Q67WN6 Q67WN6_ORYSJ Os06g0644100 OSNPB_060644100 P0017B12.6 P0416A11.39 ENOG411DTM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone-lysine N-methyltransferase H3 lysine-9 specific Os01g0927000 protein (Putative SET domain-containing protein) Q5JK06 Q5JK06_ORYSJ Os01g0927000 Os01g0927000 OSJNBa0093F16.26 OSNPB_010927000 ENOG411DTM7 ACS10,ACS12 Q9LQ10,Q8GYY0,A0A1P8B9X4 1A110_ARATH,1A112_ARATH,A0A1P8B9X4_ARATH Probable aminotransferase ACS10 (EC 2.6.1.-),Probable aminotransferase ACS12 (EC 2.6.1.-),1-amino-cyclopropane-1-carboxylate synthase 12 FUNCTION: Probable aminotransferase. Does not have 1-aminocyclopropane-1-carboxylate synthase (ACS) activity, suggesting that it is not involved in ethylene biosynthesis. 2.6.1.- 61016,55214,41303 Probable aminotransferase ACS10 (EC 2.6.1.-),Probable aminotransferase ACS12 (EC 2.6.1.-),1-amino-cyclopropane-1-carboxylate synthase 12 pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; biosynthetic process [GO:0009058],catalytic activity [GO:0003824]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12968022}.,TISSUE SPECIFICITY: Expressed in roots. Expressed at low level in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:12968022}. locus:2015509;,locus:2165306; AT1G62960,AT5G51690 Aminotransferase Os06g0130400 protein (Putative 1-aminocyclopropane-1-carboxylate synthase) (cDNA clone:J013002G02, full insert sequence) Q9SNN8 Q9SNN8_ORYSJ Os06g0130400 OsJ_19995 OSNPB_060130400 P0493C11.5 ENOG411DTM6 UMAMIT7 Q9FGL0,A0A1P8BC99,A0A1P8BC85 WTR44_ARATH,A0A1P8BC99_ARATH,A0A1P8BC85_ARATH WAT1-related protein At5g47470,WAT1-related protein 39558,42822,41855 WAT1-related protein At5g47470,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2168978; AT5G47470 auxin-induced protein WAT1-related protein Q5VS70 Q5VS70_ORYSJ Os06g0105700 Os06g0105700 OsJ_19830 OSNPB_060105700 P0644B06.28 ENOG411DTM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Leucine Rich Repeat family protein, expressed (Os03g0637600 protein) (Putative leucine-rich receptor-like protein kinase) (cDNA clone:001-201-H06, full insert sequence) (cDNA clone:006-204-E06, full insert sequence) (cDNA clone:J013133O22, full insert sequence),Os03g0637600 protein (Fragment) Q75J37,A0A0N7KHP6 Q75J37_ORYSJ,A0A0N7KHP6_ORYSJ Os03g0637600 LOC_Os03g43650 Os03g0637600 OsJ_11839 OSJNBa0066H15.13 OSNPB_030637600,Os03g0637600 OSNPB_030637600 ENOG411DTM4 Q9SD61,A0A1I9LT63 C3H42_ARATH,A0A1I9LT63_ARATH Zinc finger CCCH domain-containing protein 42 (AtC3H42),RNA recognition motif (RRM)-containing protein 40684,34908 Zinc finger CCCH domain-containing protein 42 (AtC3H42),RNA recognition motif (RRM)-containing protein catalytic step 2 spliceosome [GO:0071013]; nuclear speck [GO:0016607]; precatalytic spliceosome [GO:0071011]; RES complex [GO:0070274]; U2 snRNP [GO:0005686]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; mRNA export from nucleus [GO:0006406]; mRNA splicing, via spliceosome [GO:0000398],metal ion binding [GO:0046872]; RNA binding [GO:0003723] locus:2075676; AT3G47120 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 25 (OsC3H25) Q10B98 C3H25_ORYSJ Os03g0826400 LOC_Os03g61110 OJ1111_B11.10 OsJ_012616 OSJNBa0010E04.12 ENOG411DTM3 F4IBY8 F4IBY8_ARATH ENHANCED DISEASE RESISTANCE-like protein (DUF1336) 34851 ENHANCED DISEASE RESISTANCE-like protein (DUF1336) lipid binding [GO:0008289] locus:2198866; AT1G06050 Protein of unknown function (DUF1336) Os08g0152600 protein (cDNA clone:J013154O05, full insert sequence) Q7EYH4 Q7EYH4_ORYSJ OJ1349_D05.117 Os08g0152600 OSNPB_080152600 ENOG411DTM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor Os02g0661400 protein (Putative zinc-binding protein) Q6H6M4 Q6H6M4_ORYSJ P0516F12.12 Os02g0661400 OSNPB_020661400 ENOG411DTM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os02g0276900 protein Q0E228 Q0E228_ORYSJ Os02g0276900 Os02g0276900 OSNPB_020276900 ENOG411DTM0 F4K891 F4K891_ARATH Potassium transporter 54047 Potassium transporter integral component of membrane [GO:0016021] locus:2147780; AT5G14890 NHL repeat-containing protein NA NA NA NA NA NA NA ENOG411E5GF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E5GM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Lipid transfer protein-like protein (OSJNBa0010H02.22 protein) (Os04g0554500 protein),Os02g0662000 protein (Root-specific protein RCc3) (cDNA clone:002-155-F07, full insert sequence),OSJNBa0010H02.23 protein (Os04g0554600 protein) Q7XT30,Q6H6L9,Q7XUL2 Q7XT30_ORYSJ,Q6H6L9_ORYSJ,Q7XUL2_ORYSJ LTP2 Os04g0554500 OSJNBa0010H02.22 OSNPB_040554500,Os02g0662000 Os02g0662000 OJ1001_D02.1 OsJ_07827 OSNPB_020662000 P0516F12.19,Os04g0554600 OsJ_15725 OSJNBa0010H02.23 OSNPB_040554600 ENOG411E5GU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0141450 protein (Fragment) A0A0P0X259 A0A0P0X259_ORYSJ Os07g0141450 OSNPB_070141450 ENOG411E5GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTPM RECA,RECA1 Q39199,A8MQK1 RECAC_ARATH,A8MQK1_ARATH DNA repair protein recA homolog 1, chloroplastic (Recombinase A homolog 1),RecA DNA recombination family protein FUNCTION: Involved in recombination ability and DNA strand transfer activity. 47733,36902 DNA repair protein recA homolog 1, chloroplastic (Recombinase A homolog 1),RecA DNA recombination family protein chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; cellular response to DNA damage stimulus [GO:0006974]; DNA recombinase assembly [GO:0000730]; mitotic recombination [GO:0006312]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148],ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; single-stranded DNA binding [GO:0003697]; DNA recombination [GO:0006310]; DNA repair [GO:0006281] locus:2207445; AT1G79050 DNA repair protein recA Os03g0639700 protein (Fragment) A0A0P0W0I5 A0A0P0W0I5_ORYSJ Os03g0639700 OSNPB_030639700 ENOG411DTPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Os03g0300400 protein (Pathogenesis-related protein 1, putative, expressed) (cDNA clone:J023127E15, full insert sequence) Q10MP7 Q10MP7_ORYSJ Os03g0300400 LOC_Os03g18850 Os03g0300400 OSNPB_030300400 ENOG411DTPH MUF8.1 Q944S4,Q9FGG5,F4HSB4 Q944S4_ARATH,Q9FGG5_ARATH,F4HSB4_ARATH At1g64300/F15H21_13 (Protein kinase family protein),Protein kinase family protein (Similarity to unknown protein),Protein kinase superfamily protein 82613,81869,53118 At1g64300/F15H21_13 (Protein kinase family protein),Protein kinase family protein (Similarity to unknown protein),Protein kinase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2014255;,locus:2175065;,locus:2025356; AT1G64300,AT5G41730,AT1G01450 kinase family Os05g0585800 protein (cDNA clone:002-121-H01, full insert sequence),Os01g0621600 protein (Phytochrome / protein kinase-like),Os05g0422701 protein Q6I584,Q9AXB6,A0A0P0WMN3 Q6I584_ORYSJ,Q9AXB6_ORYSJ,A0A0P0WMN3_ORYSJ Os05g0585800 Os05g0585800 OsJ_19711 OSJNBa0009C07.12 OSNPB_050585800,Os01g0621600 Os01g0621600 OsJ_02647 OSNPB_010621600 P0501G01.1,Os05g0422701 OSNPB_050422701 ENOG411DTPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAP10 Os02g0642700 protein (Fragment),Os04g0534100 protein Q0DZ67,A0A0N7KJF1,A0A0P0WD91 Q0DZ67_ORYSJ,A0A0N7KJF1_ORYSJ,A0A0P0WD91_ORYSJ Os02g0642700 Os02g0642700 OSNPB_020642700,Os04g0534100 OSNPB_040534100 ENOG411DTPA Q9T048 DRL27_ARATH Disease resistance protein At4g27190 FUNCTION: Disease resistance protein. {ECO:0000250}. 112947 Disease resistance protein At4g27190 plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2136447; AT4G27190 disease resistance protein NA NA NA NA NA NA NA ENOG411DTPC T17J13.40 Q9M1R6,F4IX33 Q9M1R6_ARATH,F4IX33_ARATH SNF7 family protein (Uncharacterized protein At3g62080) (Uncharacterized protein T17J13.40),SNF7 family protein 47494,51919 SNF7 family protein (Uncharacterized protein At3g62080) (Uncharacterized protein T17J13.40),SNF7 family protein intracellular [GO:0005622]; vacuolar transport [GO:0007034],intracellular [GO:0005622]; leaf senescence [GO:0010150]; vacuolar transport [GO:0007034] locus:2097998; AT3G62080 Charged multivesicular body protein Os01g0286000 protein Q5NAE1 Q5NAE1_ORYSJ Os01g0286000 OSNPB_010286000 P0498A12.32 ENOG411DTPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os07g0169600 protein (Putative iron deficiency protein Ids3) (cDNA clone:001-007-F03, full insert sequence) Q69LD9 Q69LD9_ORYSJ Os07g0169600 OSJNBa0050F10.18 OSNPB_070169600 ENOG411DTPP Q8S8N4 Y2685_ARATH Probably inactive receptor-like protein kinase At2g46850 70166 Probably inactive receptor-like protein kinase At2g46850 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2044365; AT2G46850 probably inactive receptor-like protein kinase Os10g0351500 protein (Protein kinase domain containing protein, expressed),Os04g0581266 protein,Os04g0581283 protein Q339I2,A0A0P0WE32,A0A0P0WDW3 Q339I2_ORYSJ,A0A0P0WE32_ORYSJ,A0A0P0WDW3_ORYSJ Os10g0351500 LOC_Os10g21090 Os10g0351500 OsJ_31203 OSNPB_100351500,Os04g0581266 OSNPB_040581266,Os04g0581283 OSNPB_040581283 ENOG411DTPQ Q9LYE1,F4JXW2 Q9LYE1_ARATH,F4JXW2_ARATH Coiled-coil protein (Uncharacterized protein At5g11500) (Uncharacterized protein F15N18_90),Coiled-coil protein 25099,24971 Coiled-coil protein (Uncharacterized protein At5g11500) (Uncharacterized protein F15N18_90),Coiled-coil protein locus:2144286; AT5G11500 Coiled-coil domain-containing protein Os05g0221400 protein (Fragment) Q0DJV9 Q0DJV9_ORYSJ Os05g0221400 Os05g0221400 OSNPB_050221400 ENOG411DTPS ABF3,ABF2,ABF4 Q9M7Q3,Q9M7Q4,Q9M7Q2,A0A1P8AV75,F4HRD0,A0A1P8AV67,F4JB55,F4HRC9,A0A1I9LNE0,F4JB53 AI5L6_ARATH,AI5L5_ARATH,AI5L7_ARATH,A0A1P8AV75_ARATH,F4HRD0_ARATH,A0A1P8AV67_ARATH,F4JB55_ARATH,F4HRC9_ARATH,A0A1I9LNE0_ARATH,F4JB53_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6 (Abscisic acid responsive elements-binding factor 3) (ABRE-binding factor 3) (Dc3 promoter-binding factor 5) (AtDPBF5) (bZIP transcription factor 37) (AtbZIP37),ABSCISIC ACID-INSENSITIVE 5-like protein 5 (ABA-responsive element-binding protein 1) (Abscisic acid responsive elements-binding factor 2) (ABRE-binding factor 2) (bZIP transcription factor 36) (AtbZIP36),ABSCISIC ACID-INSENSITIVE 5-like protein 7 (ABA-responsive element-binding protein 2) (Abscisic acid responsive elements-binding factor 4) (ABRE-binding factor 4) (bZIP transcription factor 38) (AtbZIP38),Abscisic acid responsive elements-binding factor 2,ABRE binding factor 4 DISRUPTION PHENOTYPE: Defective in ABA and stress responses. {ECO:0000269|PubMed:15361142}.,DISRUPTION PHENOTYPE: Defective in glucose response and grows faster. Exhibits abscisic acid (ABA) insensitivity. {ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}. FUNCTION: Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}.,FUNCTION: Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.,FUNCTION: Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}. 49677,44165,46492,45883,43127,38993,44844,45519,43936,46620 ABSCISIC ACID-INSENSITIVE 5-like protein 6 (Abscisic acid responsive elements-binding factor 3) (ABRE-binding factor 3) (Dc3 promoter-binding factor 5) (AtDPBF5) (bZIP transcription factor 37) (AtbZIP37),ABSCISIC ACID-INSENSITIVE 5-like protein 5 (ABA-responsive element-binding protein 1) (Abscisic acid responsive elements-binding factor 2) (ABRE-binding factor 2) (bZIP transcription factor 36) (AtbZIP36),ABSCISIC ACID-INSENSITIVE 5-like protein 7 (ABA-responsive element-binding protein 2) (Abscisic acid responsive elements-binding factor 4) (ABRE-binding factor 4) (bZIP transcription factor 38) (AtbZIP38),Abscisic acid responsive elements-binding factor 2,ABRE binding factor 4 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; abscisic acid-activated signaling pathway [GO:0009738]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; glucose mediated signaling pathway [GO:0010255]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; abscisic acid-activated signaling pathway [GO:0009738]; glucosinolate metabolic process [GO:0019760]; positive regulation of chlorophyll catabolic process [GO:1903648]; positive regulation of leaf senescence [GO:1900057]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:11884679}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679}. locus:2118969;,locus:1005716679;,locus:2090599; AT4G34000,AT1G45249,AT3G19290 Transcription factor bZIP transcription factor TRAB1 (Protein ABA RESPONSIVE ELEMENT 1) Q6ZDF3 TRAB1_ORYSJ TRAB1 ABA1 Os08g0472000 LOC_Os08g36790 P0013B04.7 FUNCTION: Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. ENOG411DTP0 A1A6H3,A8MQX7 A1A6H3_ARATH,A8MQX7_ARATH Ribokinase (RK) (EC 2.7.1.15) FUNCTION: Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. {ECO:0000256|HAMAP-Rule:MF_03215}. PATHWAY: Carbohydrate metabolism; D-ribose degradation; D-ribose 5-phosphate from beta-D-ribopyranose: step 2/2. {ECO:0000256|HAMAP-Rule:MF_03215}. ARA:AT1G17160-MONOMER; R-ATH-71336; 2.7.1.15 40189,37677 Ribokinase (RK) (EC 2.7.1.15) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; nucleus [GO:0005634]; plastid nucleoid [GO:0042646]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; ribokinase activity [GO:0004747]; D-ribose catabolic process [GO:0019303]; nucleoside metabolic process [GO:0009116],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; ribokinase activity [GO:0004747]; D-ribose catabolic process [GO:0019303] locus:2020337; AT1G17160 K00852 ribokinase EC 2.7.1.15 Ribokinase (RK) (EC 2.7.1.15) Q5SN59 Q5SN59_ORYSJ Os01g0665400 OSNPB_010665400 P0003E08.21 FUNCTION: Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. {ECO:0000256|HAMAP-Rule:MF_03215}. ENOG411DTP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type II intron maturase NA NA NA NA NA NA NA ENOG411E1R1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase Os04g0291100 protein Q0JED2,A0A0P0W8N9 Q0JED2_ORYSJ,A0A0P0W8N9_ORYSJ Os04g0291100 Os04g0291100 OSNPB_040291100,Os04g0291100 OSNPB_040291100 ENOG411DSS6 PMP Q9ZSJ7 Q9ZSJ7_ARATH AT3g24160/MUJ8_16 (Putative type 1 membrane protein) (Type 1 membrane protein, putative) 39134 AT3g24160/MUJ8_16 (Putative type 1 membrane protein) (Type 1 membrane protein, putative) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774] locus:2093706; AT3G24160 type 1 membrane protein Os08g0567000 protein (cDNA clone:J013002D24, full insert sequence) Q0J3K6 Q0J3K6_ORYSJ Os08g0567000 Os08g0567000 OSNPB_080567000 ENOG411DSS7 JMJ14,JMJ15,JMJ18 Q8GUI6,O64752,F4I6G4 JMJ14_ARATH,JMJ15_ARATH,JMJ18_ARATH Probable lysine-specific demethylase JMJ14 (EC 1.14.11.-) (Jumonji domain-containing protein 14) (Jumonji domain-containing protein 4) (Lysine-specific histone demethylase JMJ14) (Protein JUMONJI 14),Lysine-specific demethylase JMJ15 (EC 1.14.11.-) (Jumonji domain-containing protein 15) (Lysine-specific histone demethylase JMJ15) (Protein JUMONJI 15) (Protein MATERNAL EFFECT EMBRYO ARREST 27),Lysine-specific demethylase JMJ18 (EC 1.14.11.-) (Jumonji domain-containing protein 18) (Lysine-specific histone demethylase JMJ18) (Protein JUMONJI 18) DISRUPTION PHENOTYPE: Early flowering, but normal development of all organs. Partially redundant with ELF6. {ECO:0000269|PubMed:19946624, ECO:0000269|PubMed:20177424, ECO:0000269|PubMed:20202164}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20202164, ECO:0000269|PubMed:22555401}.,DISRUPTION PHENOTYPE: Weak late-flowering phenotype. {ECO:0000269|PubMed:22536163}. Early flowering independent of photoperiod-Y. Noh-2009 FUNCTION: Transcriptional repressor (PubMed:25578968). Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing. Together with NAC051/NAC052 and NAC050, regulates gene expression and flowering time, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968). {ECO:0000269|PubMed:19946624, ECO:0000269|PubMed:20177424, ECO:0000269|PubMed:20202164, ECO:0000269|PubMed:20478993, ECO:0000269|PubMed:21052090, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.,FUNCTION: Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a specific activity for H3K4me3. No activity on H3K4me2, H3K4me1, H3K9me3/2, H3K27me3/2 and H3K36me3/2. Involved in the control of flowering time by demethylating H3K4me3 at the FLC locus and repressing its expression. The repression of FLC level and reduction in H3K4me3 at the FLC locus results in induction of the flowering activator FT, which is a downstream target of FLC. {ECO:0000269|PubMed:22555401}.,FUNCTION: Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a specific activity for H3K4me3 and H3K4me2. No activity on H3K9me3/2, H3K27me3/2 and H3K36me3/2. Involved in the control of flowering time by demethylating H3K4me3 at the FLC locus and repressing its expression. The repression of FLC level and reduction in H3K4me3 at the FLC locus results in induction of the flowering activator FT, which is a downstream target of FLC. {ECO:0000269|PubMed:22536163}. MISCELLANEOUS: Plants over-expressing JMJ15 show early flowering phenotype. {ECO:0000305|PubMed:22555401}.,MISCELLANEOUS: Plants over-expressing JMJ18 show an early-flowering phenotype. {ECO:0000305|PubMed:22536163}. R-ATH-3214842; 1.14.11.- 108156,91718,92809 Probable lysine-specific demethylase JMJ14 (EC 1.14.11.-) (Jumonji domain-containing protein 14) (Jumonji domain-containing protein 4) (Lysine-specific histone demethylase JMJ14) (Protein JUMONJI 14),Lysine-specific demethylase JMJ15 (EC 1.14.11.-) (Jumonji domain-containing protein 15) (Lysine-specific histone demethylase JMJ15) (Protein JUMONJI 15) (Protein MATERNAL EFFECT EMBRYO ARREST 27),Lysine-specific demethylase JMJ18 (EC 1.14.11.-) (Jumonji domain-containing protein 18) (Lysine-specific histone demethylase JMJ18) (Protein JUMONJI 18) nucleoplasm [GO:0005654]; dioxygenase activity [GO:0051213]; histone demethylase activity (H3-K4 specific) [GO:0032453]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; histone H3-K4 demethylation [GO:0034720]; maintenance of DNA methylation [GO:0010216]; negative regulation of flower development [GO:0009910]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; negative regulation of transcription, DNA-templated [GO:0045892]; photoperiodism, flowering [GO:0048573]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; histone demethylase activity (H3-trimethyl-K4 specific) [GO:0034647]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; histone demethylase activity (H3-K4 specific) [GO:0032453]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; photoperiodism, flowering [GO:0048573]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in shoot apex, primary root tip, trichomes of young leaves, leaf vascular tissues, anther filaments and styles. Detected in inflorescences, leaves, stems, roots and siliques. {ECO:0000269|PubMed:18713399, ECO:0000269|PubMed:19946624, ECO:0000269|PubMed:20202164}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons, shoot apex, rosette and cauline leaves, stems, inflorescences and siliques. {ECO:0000269|PubMed:22555401}.,TISSUE SPECIFICITY: Expressed in vascular tissues of roots, cotyledons, leaves and flowers. Expressed predominantly in phloem companion cells of roots. {ECO:0000269|PubMed:22536163}. locus:2128659;,locus:2044697;,locus:2196979; AT4G20400,AT2G34880,AT1G30810 lysine-specific demethylase JMJ14-like Lysine-specific demethylase JMJ703 (EC 1.14.11.-) (Jumonji domain-containing protein 703) (Lysine-specific histone demethylase JMJ703) (Protein JUMONJI 703),Os05g0302300 protein Q53WJ1,Q0DJC2 JM703_ORYSJ,Q0DJC2_ORYSJ JMJ703 Os05g0196500 LOC_Os05g10770 P0617H07.8,Os05g0302300 Os05g0302300 OSNPB_050302300 DISRUPTION PHENOTYPE: Semi-dwarf plants and reduced seed size. Small panicle enclosure phenotype. {ECO:0000269|PubMed:23319643, ECO:0000269|PubMed:23357881}. FUNCTION: Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a specific activity for H3K4me3, H3K4me2 and H3K4me1. No activity on H3K9me3/2/1, H3K27me3/2/1 and H3K36me3/2/1. Involved in the control of stem elongation by regulating methylation states of H3K4me3 on cytokinin oxidase (CKX) gene family, which may cause increased expression of CKX genes and reduced cytokinin levels. Prevents ectopic retrotransposition by regulating the levels of H3K4me3 in two non-LTR retrotransposons KARMA and LINE-1 (L1) and reinforcing their repressed states. {ECO:0000269|PubMed:23319643, ECO:0000269|PubMed:23357881}. ENOG411DSS4 F4HZZ6 F4HZZ6_ARATH Erythroid differentiation factor-like protein 156417 Erythroid differentiation factor-like protein plasma membrane [GO:0005886] locus:2014736; AT1G35660 Inherit from euNOG: Chromosome 10 open reading frame 137 Erythroid differentiation-related factor 1-like protein (Os01g0873800 protein) Q5N730 Q5N730_ORYSJ Os01g0873800 Os01g0873800 OSNPB_010873800 P0491F11.31 ENOG411DSS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0624800 protein) Q2QLX7 Q2QLX7_ORYSJ Os12g0624800 LOC_Os12g42960 Os12g0624800 OSNPB_120624800 ENOG411DSS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heme-binding protein Os01g0235300 protein (cDNA clone:006-207-C09, full insert sequence) (cDNA clone:006-308-A11, full insert sequence) (cDNA clone:J033115I02, full insert sequence) Q9LDX7 Q9LDX7_ORYSJ Os01g0235300 OsJ_01024 OSNPB_010235300 P0702F03.34 P0708G02.7 ENOG411DSS3 Q8RWF4 NIPA8_ARATH Probable magnesium transporter NIPA8 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). {ECO:0000250}. 48409 Probable magnesium transporter NIPA8 early endosome [GO:0005769]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095]; magnesium ion transport [GO:0015693] locus:2090822; AT3G26670 Pfam:DUF803 Probable magnesium transporter Q6H4M5 Q6H4M5_ORYSJ Os02g0518100 OSJNOa257A21.14 OSNPB_020518100 P0461D06.6 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. ENOG411DSS0 ASK4,ASK10,ASK8,ASK5,SK41,SK42 Q9FVS6,Q39019,Q96287,Q8VZD5,A0A1P8AUK7,F4I9N7 KSG4_ARATH,KSG10_ARATH,KSG8_ARATH,KSG5_ARATH,A0A1P8AUK7_ARATH,F4I9N7_ARATH Shaggy-related protein kinase delta (EC 2.7.11.1) (ASK-delta) (Shaggy-related protein kinase 42) (AtSK42),Shaggy-related protein kinase kappa (AtHIR1) (EC 2.7.11.1) (ASK-kappa) (AtK-1) (Shaggy-related protein kinase 41) (AtSK41),Shaggy-related protein kinase theta (EC 2.7.11.1) (ASK-theta) (Shaggy-related protein kinase 32) (AtSK32),Shaggy-related protein kinase epsilon (EC 2.7.11.1) (ASK-epsilon) (Shaggy-related protein kinase 13) (AtSK13),Shaggy-like protein kinase 41,Shaggy-like kinase 42 FUNCTION: May mediate extracellular signals to regulate transcription in differentiating cells. {ECO:0000250}. R-ATH-3371453; 2.7.11.26; 2.7.11.1 47835,47669,53162,46074,33847,50829 Shaggy-related protein kinase delta (EC 2.7.11.1) (ASK-delta) (Shaggy-related protein kinase 42) (AtSK42),Shaggy-related protein kinase kappa (AtHIR1) (EC 2.7.11.1) (ASK-kappa) (AtK-1) (Shaggy-related protein kinase 41) (AtSK41),Shaggy-related protein kinase theta (EC 2.7.11.1) (ASK-theta) (Shaggy-related protein kinase 32) (AtSK32),Shaggy-related protein kinase epsilon (EC 2.7.11.1) (ASK-epsilon) (Shaggy-related protein kinase 13) (AtSK13),Shaggy-like protein kinase 41,Shaggy-like kinase 42 ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777]; response to brassinosteroid [GO:0009741],cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; hyperosmotic response [GO:0006972]; protein autophosphorylation [GO:0046777]; response to salt stress [GO:0009651],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; hyperosmotic response [GO:0006972]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed exclusively in inflorescences. locus:2024341;,locus:2126993;,locus:2222642;,locus:2009400; AT1G57870,AT1G09840,AT4G00720,AT5G14640 Shaggy-related protein kinase Os10g0521700 protein (Putative shaggy-like kinase) (Shaggy-related protein kinase theta, putative, expressed),Os03g0841800 protein (Shaggy-related protein kinase kappa, putative, expressed) (cDNA clone:J023042K05, full insert sequence),Os03g0841800 protein (Fragment) Q8LNI5,Q6AVQ3,A0A0P0W5V2 Q8LNI5_ORYSJ,Q6AVQ3_ORYSJ,A0A0P0W5V2_ORYSJ Os10g0521700 LOC_Os10g37740 Os10g0521700 OsJ_32193 OSJNBb0028C01.28 OSNPB_100521700,Os03g0841800 LOC_Os03g62500 Os03g0841800 OsJ_13316 OSJNBa0075M12.19 OSNPB_030841800,Os03g0841800 OSNPB_030841800 ENOG411DSS1 MED35C Q9LT25 PR40C_ARATH Pre-mRNA-processing protein 40C (Mediator of RNA polymerase II transcription subunit 35c) (Transcription elongation regulator 1) FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II. {ECO:0000269|PubMed:19467629}. 92807 Pre-mRNA-processing protein 40C (Mediator of RNA polymerase II transcription subunit 35c) (Transcription elongation regulator 1) nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2092296; AT3G19840 transcription elongation regulator FF domain containing protein, expressed (Os10g0485000 protein) Q337J6 Q337J6_ORYSJ Os10g0485000 LOC_Os10g34380 Os10g0485000 OSNPB_100485000 ENOG411DSS8 P93749,A0A1P8B1R2 Y2197_ARATH,A0A1P8B1R2_ARATH Probable protein kinase At2g41970 (EC 2.7.11.-),Protein kinase superfamily protein R-ATH-446652; 2.7.11.- 39378,28674 Probable protein kinase At2g41970 (EC 2.7.11.-),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; pollen tube growth [GO:0009860]; protein phosphorylation [GO:0006468]; root hair cell tip growth [GO:0048768],ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] locus:2064557; AT2G41970 protein kinase At2g41970-like Os02g0565500 protein (cDNA clone:J023132N04, full insert sequence),Os03g0226300 protein (Protein kinase domain containing protein, expressed) Q6Z7D9,Q8H7R2 Q6Z7D9_ORYSJ,Q8H7R2_ORYSJ Os02g0565500 OSNPB_020565500 P0020C11.30,OSJNBa0081P02.20 LOC_Os03g12520 Os03g0226300 OsJ_09992 OSNPB_030226300 ENOG411DSS9 SWEETIE F4HRS2 SWTIE_ARATH Protein SWEETIE DISRUPTION PHENOTYPE: Drastically altered morphogenesis, growth and development, including severe dwarfism, lancet-shaped leaves, early senescence and flower sterility. Strongly modified carbohydrate metabolism leading to increased accumulation of endogenous sugars (e.g. trehalose, trehalose-6-phosphate and starch). Ethylene over-production. Up-regulation of genes involved in sugar metabolism, senescence, ethylene biosynthesis and abiotic stress. In light, hypersensitivity to sucrose and glucose during vegetative growth, with partial phenotypic reversion in the presence of high sorbitol concentrations. Altered sugar-mediated hypocotyl elongation response in the dark. {ECO:0000269|PubMed:18452589, ECO:0000269|PubMed:19704840}. Dwarfed. Small asymmetric lancet-shaped leaves (cotyledons unaffected). Early senescence of leaves petals and sepals. Large stigma. Infertile. Over-accumulates starch and trehalose. Dwarf; Lancet-shaped leaves; Completely sterile; Early senescence-R. Sangwan-2008 FUNCTION: May regulates multiple metabolic, hormonal and stress-related pathways. Required for carbohydrate metabolism and homoeostasis. May also monitor ethylene biosynthesis and senescence. {ECO:0000269|PubMed:18452589, ECO:0000269|PubMed:19704840}. 244381 Protein SWEETIE cytosol [GO:0005829]; carbohydrate metabolic process [GO:0005975]; ethylene biosynthetic process [GO:0009693]; regulation of ethylene biosynthetic process [GO:0010364]; regulation of leaf senescence [GO:1900055]; starch metabolic process [GO:0005982]; trehalose metabolic process [GO:0005991] locus:2033666; AT1G67140 HEAT repeat-containing protein Os06g0505302 protein A0A0P0WX54 A0A0P0WX54_ORYSJ Os06g0505302 OSNPB_060505302 ENOG411DSSV Q0WVH7,Q9M082,A0A1P8B4Q7 Q0WVH7_ARATH,Q9M082_ARATH,A0A1P8B4Q7_ARATH ARM repeat superfamily protein (Uncharacterized protein At1g13160),SDA1 family protein (Uncharacterized protein AT4g31520),SDA1 family protein 89306,79090,69821 ARM repeat superfamily protein (Uncharacterized protein At1g13160),SDA1 family protein (Uncharacterized protein AT4g31520),SDA1 family protein nucleus [GO:0005634]; actin cytoskeleton organization [GO:0030036]; ribosomal large subunit biogenesis [GO:0042273]; ribosomal large subunit export from nucleus [GO:0000055],cell [GO:0005623]; actin cytoskeleton organization [GO:0030036]; ribosomal large subunit biogenesis [GO:0042273]; ribosomal large subunit export from nucleus [GO:0000055] locus:2031895;,locus:2125274; AT1G13160,AT4G31520 Protein SDA1 homolog Os04g0630000 protein (Fragment) Q0J9V2 Q0J9V2_ORYSJ Os04g0630000 Os04g0630000 OSNPB_040630000 ENOG411DSSW SUS5,SUS6 F4K5W8,Q9FX32,A0A1R7T3F6,A0A1R7T3F5,F4HQ76 SUS5_ARATH,SUS6_ARATH,A0A1R7T3F6_ARATH,A0A1R7T3F5_ARATH,F4HQ76_ARATH Sucrose synthase 5 (AtSUS5) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 5),Sucrose synthase 6 (AtSUS6) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 6),Sucrose synthase (EC 2.4.1.13) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17257168}. No visible phenotype.,The amounts of glucose fructose sucrose cellulose (roots) and starch in the mutant were not statistically significantly different from those of the equivalent wild-type lines grown under the same conditions at the same time.,When grown in soil or hydroponically the double mutant line was not obviously different from wild-type controls. FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. Functions in callose synthesis at the site of phloem sieve elements. {ECO:0000269|PubMed:19470642}.,FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000256|RuleBase:RU280817}. MetaCyc:AT5G37180-MONOMER;,MetaCyc:AT1G73370-MONOMER; 2.4.1.13; 2.4.1.13 94905,106876,74075,67451,102027 Sucrose synthase 5 (AtSUS5) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 5),Sucrose synthase 6 (AtSUS6) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 6),Sucrose synthase (EC 2.4.1.13) cell wall [GO:0005618]; extracellular region [GO:0005576]; sucrose synthase activity [GO:0016157]; callose deposition in phloem sieve plate [GO:0080165]; sucrose metabolic process [GO:0005985],sucrose synthase activity [GO:0016157]; sucrose metabolic process [GO:0005985] TISSUE SPECIFICITY: Detected in the whole plant but more precisely confined to the vasculature in cotyledons, leaves, petals, anthers and roots. Also detected in developing siliques, young immature rosette and cauline leaves. {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168, ECO:0000269|PubMed:18635527, ECO:0000269|PubMed:19470642}.,TISSUE SPECIFICITY: Detected in the whole plant but more precisely confined to the vasculature in cotyledons, leaves, petals, anthers and roots. {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168, ECO:0000269|PubMed:18635527, ECO:0000269|PubMed:19470642}. locus:2166203;,locus:2206865; AT5G37180,AT1G73370 Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways (By similarity) NA NA NA NA NA NA NA ENOG411DSST MZB10.8 Q9SS82 Q9SS82_ARATH 8-amino-7-oxononanoate synthase (At3g09050) (MZB10.8 protein) (Uncharacterized protein At3g09050) 29249 8-amino-7-oxononanoate synthase (At3g09050) (MZB10.8 protein) (Uncharacterized protein At3g09050) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535] locus:2095299; AT3G09050 NA Os01g0853000 protein (cDNA clone:J013034J20, full insert sequence) Q5N9C0 Q5N9C0_ORYSJ Os01g0853000 Os01g0853000 OsJ_04104 OSNPB_010853000 P0529E05.17 ENOG411DSSU FGT1 F4IF36 FGT1_ARATH Protein FORGETTER 1 (Protein EMBRYO DEFECTIVE 1135) DISRUPTION PHENOTYPE: Abnormal embryo development leading to reduced cotyledons (PubMed:15266054, PubMed:18684657). Reduced maintenance of heat-induced (37 degrees Celsius) gene expression leading to reduced growth and survival in heat conditions (44 degrees Celsius). Abnormal nucleosome dynamics at loci with altered maintenance of heat-induced expression. The double mutant brm-1 fgt1-1 exhibits retarted seedling development resulting in reduced development and delayed leaf initiation, as well as delayed flowering time (PubMed:27680998). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:18684657, ECO:0000269|PubMed:27680998}. Embryo defective; Cotyledon-D. Meinke-2004 FUNCTION: Required for normal embryo development (PubMed:15266054, PubMed:18684657). Necessary to acquire heat stress (HS) memory, by modulating nucleosome occupancy and regulating heat-induced gene expression. Associates globally with the nucleosome-poor regions flanking the transcription units of expressed genes. Binds to the promoter regions, primarily to the proximal promoter just upstream of the transcriptional start sites (TSS) and somewhat more weakly to the region downstream of the transcription termination site (TTS), of actively expressed genes (e.g. HSA32, HSP18.2 and HSP22.0) in a heat-dependent fashion (PubMed:27680998). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:18684657, ECO:0000269|PubMed:27680998}. 143617 Protein FORGETTER 1 (Protein EMBRYO DEFECTIVE 1135) cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; promoter-specific chromatin binding [GO:1990841]; heat acclimation [GO:0010286]; multicellular organism development [GO:0007275]; nucleosome assembly [GO:0006334]; nucleosome positioning [GO:0016584]; positive regulation of cellular response to heat [GO:1900036]; regulation of gene expression, epigenetic [GO:0040029]; regulation of transcription, DNA-templated [GO:0006355]; response to heat [GO:0009408]; transcription, DNA-templated [GO:0006351] locus:2207365; AT1G79350 Inherit from KOG: Strawberry notch homolog Os04g0609700 protein (Fragment),Os08g0223766 protein,Os08g0223833 protein Q0JA99,A0A0P0XDE1,A0A0P0XD70,A0A0P0WEL8 Q0JA99_ORYSJ,A0A0P0XDE1_ORYSJ,A0A0P0XD70_ORYSJ,A0A0P0WEL8_ORYSJ Os04g0609700 Os04g0609700 OSNPB_040609700,Os08g0223766 OSNPB_080223766,Os08g0223833 OSNPB_080223833,Os04g0609700 OSNPB_040609700 ENOG411DSSR SGPP Q9ZVJ5 SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp (EC 3.1.3.-) (Subclass I phosphosugar phosphatase) (AtSgpp) FUNCTION: Acts as a phosphosugar phosphatase on a broad range of sugar phosphate substrates with preferential activity on D-ribose-5-phosphate, 2-deoxy-D-ribose-5-phosphate, 2-deoxy-D-glucose-6-phosphate, and D-mannose-6-phosphate and with a lower activity on D-fructose-1-phosphate, D-glucose-6-phosphate, DL-glycerol-3-phosphate, and D-fructose-6-phosphate. {ECO:0000269|PubMed:23179445}. 3.1.3.- 26732 Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp (EC 3.1.3.-) (Subclass I phosphosugar phosphatase) (AtSgpp) cytosol [GO:0005829]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; sugar-phosphatase activity [GO:0050308] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:23179445}. locus:2064133; AT2G38740 Haloacid dehalogenase-like hydrolase family protein Os09g0407700 protein (cDNA, clone: J090085P19, full insert sequence),Os10g0568900 protein (Fragment) A3BYP4,A0A0P0XXQ7 A3BYP4_ORYSJ,A0A0P0XXQ7_ORYSJ Os09g0407700 OsJ_29309 OSNPB_090407700,Os10g0568900 OSNPB_100568900 ENOG411DSSS MAPR4 Q2HIW2,A0A1P8B805 MAPR4_ARATH,A0A1P8B805_ARATH Membrane-associated progesterone-binding protein 4 (AtMAPR4),Membrane-associated progesterone binding protein 4 27167,22356 Membrane-associated progesterone-binding protein 4 (AtMAPR4),Membrane-associated progesterone binding protein 4 endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; steroid binding [GO:0005496],integral component of membrane [GO:0016021] locus:505006467; AT4G14965 Cytochrome b5-like Heme/Steroid binding domain Os03g0205500 protein A0A0P0VUM5 A0A0P0VUM5_ORYSJ Os03g0205500 OSNPB_030205500 ENOG411DSSP XPB1,XPB2 Q38861,Q9FUG4,A0A1P8BCS7 XPB1_ARATH,XPB2_ARATH,A0A1P8BCS7_ARATH DNA repair helicase XPB1 (EC 3.6.4.12) (ERCC3 homolog 1) (Protein araXPB) (RAD25 homolog 1) (AtXPB1) (XPB homolog 1),DNA repair helicase XPB2 (EC 3.6.4.12) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2) (XPB homolog 2),Homolog of Xeroderma pigmentosum complementation group B 2 Slow growth; Sensitive to alkylating agents-C. Menck-2001 FUNCTION: ATP-dependent 3'-5' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATPase activity of XPB, but not its helicase activity, is required for DNA opening. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. The ATP-dependent helicase activity of XPB is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription (By similarity). Required during the early stages of development, including seed germination (PubMed:11737776). {ECO:0000250|UniProtKB:P19447, ECO:0000269|PubMed:11737776}.,FUNCTION: ATP-dependent 3'-5' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATPase activity of XPB, but not its helicase activity, is required for DNA opening. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. The ATP-dependent helicase activity of XPB is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. {ECO:0000250|UniProtKB:P19447}. R-ATH-113418;R-ATH-5696395;R-ATH-5696400;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 3.6.4.12 87062,86736,86127 DNA repair helicase XPB1 (EC 3.6.4.12) (ERCC3 homolog 1) (Protein araXPB) (RAD25 homolog 1) (AtXPB1) (XPB homolog 1),DNA repair helicase XPB2 (EC 3.6.4.12) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2) (XPB homolog 2),Homolog of Xeroderma pigmentosum complementation group B 2 cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleotide-excision repair [GO:0006289]; regulation of transcription, DNA-templated [GO:0006355]; response to UV [GO:0009411]; transcription initiation from RNA polymerase II promoter [GO:0006367],nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleotide-excision repair [GO:0006289]; regulation of transcription, DNA-templated [GO:0006355]; response to UV-B [GO:0010224]; transcription initiation from RNA polymerase II promoter [GO:0006367],ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleotide-excision repair [GO:0006289]; transcription initiation from RNA polymerase II promoter [GO:0006367] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:9524267}. locus:2177901;,locus:2177891; AT5G41370,AT5G41360 DNA repair helicase Os01g0691600 protein,Os01g0691600 protein (Fragment) Q0JK78,A0A0P0V6X5 Q0JK78_ORYSJ,A0A0P0V6X5_ORYSJ Os01g0691600 Os01g0691600 OSNPB_010691600,Os01g0691600 OSNPB_010691600 ENOG411DSSQ INO80,PIE1 Q8RXS6,Q7X9V2,A0A1I9LT22,A0A1I9LQH7,F4J277 INO80_ARATH,PIE1_ARATH,A0A1I9LT22_ARATH,A0A1I9LQH7_ARATH,F4J277_ARATH DNA helicase INO80 (AtINO80) (EC 3.6.4.12) (Putative DNA helicase INO80 complex homolog 1),Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (EC 3.6.4.12) (Independent early flowering 1 protein) (Protein CHROMATIN REMODELING 13) (AtCHR13),DNA helicase INO80-like protein,SNF2 domain-containing protein / helicase domain-containing protein DISRUPTION PHENOTYPE: Decreased homologous recombination frequency, but unchanged sensitivity to genotoxic agents and efficiency of T-DNA integration. {ECO:0000269|PubMed:15525519}.,DISRUPTION PHENOTYPE: Early flowering. Loss of H2A.Z from chromatin. {ECO:0000269|PubMed:12837955, ECO:0000269|PubMed:17220196}. homologous recombination (HR) frequency reduced to 15% of that in the wild-type; produces significantly more lateral branching from the rosette. Early flowering independent of photoperiod-R. Amasino-2003 FUNCTION: DNA helicase and probable main scaffold component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair. Positive regulator of homologous recombination, but not an essential component of homologous recombination. Not involved in the illegitimate repair pathway. {ECO:0000269|PubMed:15525519}.,FUNCTION: Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. Probable DNA-dependent ATPase. Not involved in the repression of FLC in gametophytes, but required for the reactivation of FLC in early embryos and for the maintenance of full activation of FLC in late embryos. {ECO:0000269|PubMed:12837955, ECO:0000269|PubMed:17220196, ECO:0000269|PubMed:17988222, ECO:0000269|PubMed:19121105}. 3.6.4.12 172172,234048,143242,233578,175960 DNA helicase INO80 (AtINO80) (EC 3.6.4.12) (Putative DNA helicase INO80 complex homolog 1),Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (EC 3.6.4.12) (Independent early flowering 1 protein) (Protein CHROMATIN REMODELING 13) (AtCHR13),DNA helicase INO80-like protein,SNF2 domain-containing protein / helicase domain-containing protein Ino80 complex [GO:0031011]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; chromatin remodeling [GO:0006338]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cell wall [GO:0005618]; SWI/SNF complex [GO:0016514]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; cell differentiation [GO:0030154]; covalent chromatin modification [GO:0016569]; defense response to bacterium [GO:0042742]; flower development [GO:0009908]; response to cadmium ion [GO:0046686],Ino80 complex [GO:0031011]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; chromatin remodeling [GO:0006338]; DNA repair [GO:0006281]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524]; helicase activity [GO:0004386],Ino80 complex [GO:0031011]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; histone binding [GO:0042393]; chromatin remodeling [GO:0006338]; DNA repair [GO:0006281]; positive regulation of DNA repair [GO:0045739]; regulation of transcription, DNA-templated [GO:0006355]; somatic cell DNA recombination [GO:0016444]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in ovules, but not in stamens. {ECO:0000269|PubMed:19121105}. locus:2087780;,locus:2082608; AT3G57300,AT3G12810 helicase Os03g0352500 protein (Fragment),Os02g0689800 protein (Fragment),Os03g0352450 protein Q0DRV0,A0A0P0VNC6,A0A0P0VXH3 Q0DRV0_ORYSJ,A0A0P0VNC6_ORYSJ,A0A0P0VXH3_ORYSJ Os03g0352500 Os03g0352500 OSNPB_030352500,Os02g0689800 OSNPB_020689800,Os03g0352450 OSNPB_030352450 ENOG411DSSZ TIC Q94KE2,A0A1I9LQ49,B3H7F6 TIC_ARATH,A0A1I9LQ49_ARATH,B3H7F6_ARATH Protein TIME FOR COFFEE,Time for coffee DISRUPTION PHENOTYPE: Plants have a reduced amplitude and accuracy of circadian rhythms. {ECO:0000269|PubMed:17496120}. Altered circadian regulation; reduced amplitude and accuracy of multiple circadian rhythms; disrupted circadian gating of light responses; altered morphology (slightly reduced hypocotyl elongation architecture of rosettes similar to wild type but slightly smaller slow formation of new rosette leaves pale-green plants); early flowering and insensitive to photoperiod; affected CAB clock in the mid to late subjective night (a phase at which any human activity often requires coffee),LHY expression approaches arrhythmicity immediately after being transferred into constant-light conditions. Mean levels of LHY are lower than in wild-type plants. Pale green; Slow leaf growth; Chlorosis; Early flowering; Abnormal circadian rhythms; Sensitive to iron-A. Millar-2003 FUNCTION: Regulator of normal clock function. Acts in the mid to late night. Contributes to the amplitude of circadian clocks. May act on the transcriptional induction of LATE ELONGATED HYPOCOTYL (LHY). Inhibits MYC2 protein accumulation, acting as a negative factor in the JA-signaling pathway. {ECO:0000269|PubMed:14555691, ECO:0000269|PubMed:17496120, ECO:0000269|PubMed:22693280}. MISCELLANEOUS: Called 'TIME FOR COFFEE' because it acts in the mid to late night, a phase at which any human activity often requires coffee. 164456,164584,164930 Protein TIME FOR COFFEE,Time for coffee nucleus [GO:0005634]; rhythmic process [GO:0048511],nucleus [GO:0005634]; developmental process [GO:0032502]; regulation of circadian rhythm [GO:0042752]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979]; response to water deprivation [GO:0009414]; starch metabolic process [GO:0005982] DEVELOPMENTAL STAGE: Constitutively expressed over circadian time (at protein level). Not autoregulated. {ECO:0000269|PubMed:17496120}. locus:2087812; AT3G22380 Protein TIME FOR Os07g0571100 protein (Fragment) A0A0N7KNQ0,A0A0P0X808,A0A0P0X7K6 A0A0N7KNQ0_ORYSJ,A0A0P0X808_ORYSJ,A0A0P0X7K6_ORYSJ Os07g0571100 OSNPB_070571100 ENOG411DSSX POLK Q6JDV7,A0A1P8ANG9,A0A1P8ANG2,A0A1P8ANJ3 POLK_ARATH,A0A1P8ANG9_ARATH,A0A1P8ANG2_ARATH,A0A1P8ANJ3_ARATH DNA polymerase kappa (AtPOLK) (EC 2.7.7.7),DNA/RNA polymerases superfamily protein FUNCTION: Template-directed low-fidelity DNA polymerase specifically involved in DNA repair (PubMed:15200644, PubMed:17550419). Able to extend primer-terminal mispairs, and to insert nucleotides opposite to a single 7,8-dihydro-8-oxoGuanine (8-oxoG) lesion and moderately extend from the resulting primer end, thus leading to both error-free and error-prone bypass of 8-oxoG DNA lesions (PubMed:17550419). Probably involved in consecutive DNA replication cycles in the absence of mitosis (PubMed:15200644). Binds preferentially template-primer DNA substrates or single-stranded DNA (PubMed:17550419). Plays an important role in translesion synthesis, where the normal high-fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Depending on the context, it inserts the correct base, but causes frequent base transitions, transversions and frameshifts (By similarity). {ECO:0000250|UniProtKB:Q9UBT6, ECO:0000269|PubMed:15200644, ECO:0000269|PubMed:17550419}. R-ATH-5655862;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210; 2.7.7.7 75252,73095,57173,57929 DNA polymerase kappa (AtPOLK) (EC 2.7.7.7),DNA/RNA polymerases superfamily protein membrane [GO:0016020]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281]; DNA replication [GO:0006260],damaged DNA binding [GO:0003684]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281] DEVELOPMENTAL STAGE: In young seedlings, strongly expressed in cotyledons, and, at lower levels, in the hypocotyl adjacent region. Later confined to cotyledons vascular tissues and observed in leaf primordia and young growing leaves. Accumulates in the basal part of trichomes. In mature flowers, present in sepals, stamen filaments and stigma. Accumulates progressively in maturating siliques. {ECO:0000269|PubMed:15200644}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Present in endoreduplicating cells. {ECO:0000269|PubMed:15200644}. locus:2031050; AT1G49980 dna polymerase Os03g0616300 protein (Putative DNA-directed polymerase, having alternative splicing products),Os03g0616300 protein Q6ATV2,Q0DQB4 Q6ATV2_ORYSJ,Q0DQB4_ORYSJ OJ1285_H07.4 Os03g0616300 OSNPB_030616300,Os03g0616300 OSNPB_030616300 ENOG411DSSY PUX6,PUX3,PUX4,PUX5 F4IXN6,Q9SUG6,Q8RWU7,Q7Y175,A0A1I9LS32 PUX6_ARATH,PUX3_ARATH,PUX4_ARATH,PUX5_ARATH,A0A1I9LS32_ARATH Plant UBX domain-containing protein 6 (PUX6),Plant UBX domain-containing protein 3 (PUX3) (CDC48-interacting UBX-domain protein 3),Plant UBX domain-containing protein 4 (PUX4) (CDC48-interacting UBX-domain protein 4),Plant UBX domain-containing protein 5 (PUX5),UBX domain-containing protein 47950,32927,32897,44996,48432 Plant UBX domain-containing protein 6 (PUX6),Plant UBX domain-containing protein 3 (PUX3) (CDC48-interacting UBX-domain protein 3),Plant UBX domain-containing protein 4 (PUX4) (CDC48-interacting UBX-domain protein 4),Plant UBX domain-containing protein 5 (PUX5),UBX domain-containing protein cytosol [GO:0005829]; nucleus [GO:0005634]; protein phosphatase regulator activity [GO:0019888]; ubiquitin binding [GO:0043130]; autophagosome assembly [GO:0000045]; Golgi organization [GO:0007030]; membrane fusion [GO:0061025]; nuclear envelope reassembly [GO:0031468]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],cytosol [GO:0005829]; nucleus [GO:0005634]; ATPase binding [GO:0051117]; protein phosphatase regulator activity [GO:0019888]; ubiquitin binding [GO:0043130]; autophagosome assembly [GO:0000045]; Golgi organization [GO:0007030]; membrane fusion [GO:0061025]; nuclear envelope reassembly [GO:0031468]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2089920;,locus:2132001;,locus:2137291;,locus:2130110; AT3G21660,AT4G22150,AT4G04210,AT4G15410 UBA and UBX domain-containing protein Os06g0634600 protein (Phosphatase-like),Os04g0464500 protein Q67V39,Q0JCK5 Q67V39_ORYSJ,Q0JCK5_ORYSJ Os06g0634600 Os06g0634600 OSJNBa0019I19.10 OSNPB_060634600,Os04g0464500 Os04g0464500 OSNPB_040464500 ENOG411DSSF SBH1,SBH2 Q8VYI1,Q9AST3,A0A1P8APD5 SBH1_ARATH,SBH2_ARATH,A0A1P8APD5_ARATH Sphinganine C4-monooxygenase 1 (EC 1.14.18.5) (Sphingoid C4-hydroxylase 1) (Sphingoid base hydroxylase 1),Sphinganine C4-monooxygenase 2 (EC 1.14.18.5) (Sphingoid C4-hydroxylase 2) (Sphingoid base hydroxylase 2),Sphingoid base hydroxylase 2 DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with SBH2. Sbh1 and sbh2 double mutants are severely dwarfed, do not progress from vegetative to reproductive growth and have enhanced expression of programmed cell death associated-genes. {ECO:0000269|PubMed:18612100}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with SBH1. Sbh1 and sbh2 double mutants are severely dwarfed, do not progress from vegetative to reproductive growth and have enhanced expression of programmed cell death associated-genes. {ECO:0000269|PubMed:18612100}. Dwarf plants with reduced vigor dies before expansion of the true leaves necrotic lesions on cotyledons. When grew on agar plates the double mutants displayed extended viability and developed into compact and epinastic rosette with small curled leaves and short petioles however no bolting. Short roots on agar plate. FUNCTION: Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Can use C18- and C20-sphinganine as substrates to produce C18- and C20-phytosphinganines (D-ribo-2-amino-1,3,4-trihydroxyoctadecane and -eicosane). {ECO:0000269|PubMed:11297741, ECO:0000269|PubMed:18612100}. PATHWAY: Membrane lipid metabolism; sphingolipid biosynthesis. ARA:AT1G69640-MONOMER;MetaCyc:AT1G69640-MONOMER;,ARA:AT1G14290-MONOMER;MetaCyc:AT1G14290-MONOMER; 1.14.13.169; 1.14.18.5 29819,29831,21447 Sphinganine C4-monooxygenase 1 (EC 1.14.18.5) (Sphingoid C4-hydroxylase 1) (Sphingoid base hydroxylase 1),Sphinganine C4-monooxygenase 2 (EC 1.14.18.5) (Sphingoid C4-hydroxylase 2) (Sphingoid base hydroxylase 2),Sphingoid base hydroxylase 2 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; sphingolipid delta-4 desaturase activity [GO:0042284]; photomorphogenesis [GO:0009640]; sphingoid biosynthetic process [GO:0046520],integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; lipid biosynthetic process [GO:0008610] TISSUE SPECIFICITY: Ubiquitous, with higher levels in flowers and roots. {ECO:0000269|PubMed:18612100}. locus:2026756;,locus:2012512; AT1G69640,AT1G14290 hydroxylase Os02g0745700 protein (Sterol desaturase-like) (cDNA clone:J033117K11, full insert sequence),Acid phosphatase-like (Os06g0226950 protein) (cDNA, clone: J065218I08, full insert sequence),Os07g0627700 protein (cDNA clone:J023072H19, full insert sequence),Os02g0745700 protein (Fragment),Os07g0627700 protein Q6YWY7,Q67WK8,Q0D4G3,A0A0P0VPU9,A0A0P0X9J9 Q6YWY7_ORYSJ,Q67WK8_ORYSJ,Q0D4G3_ORYSJ,A0A0P0VPU9_ORYSJ,A0A0P0X9J9_ORYSJ Os02g0745700 OJ1118_G04.23 OsJ_08369 OSJNBb0024K03.1 OSNPB_020745700,Os06g0226950 Os06g0226950 OsJ_20672 OSNPB_060226950 P0425F05.11 P0690H04.35,Os07g0627700 Os07g0627700 OsJ_25211 OSNPB_070627700,Os02g0745700 OSNPB_020745700,Os07g0627700 OSNPB_070627700 ENOG411DSSG ndhF P56752 NU5C_ARATH NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 5) (NADH-plastoquinone oxidoreductase subunit 5) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity). {ECO:0000250}. ARA:ATCG01010-MONOMER; 1.6.5.- 85239 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 5) (NADH-plastoquinone oxidoreductase subunit 5) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038]; ATP synthesis coupled electron transport [GO:0042773]; transport [GO:0006810] locus:504954724; ATCG01010 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 5) (NADH-plastoquinone oxidoreductase subunit 5) P0C328 NU5C_ORYSJ ndhF LOC_Osp1g00880 Nip165 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity). {ECO:0000250}. ENOG411DSSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA subtilisin-like Os01g0868800 protein A0A0P0VAS5 A0A0P0VAS5_ORYSJ Os01g0868800 OSNPB_010868800 ENOG411DSSE CRK5,CRK6,CRK3,CRK4 Q9SCS2,Q9SG12,Q9ZUZ2,Q9FIM9,A0A1P8AY20 CAMK5_ARATH,CAMK6_ARATH,CAMK3_ARATH,CAMK4_ARATH,A0A1P8AY20_ARATH CDPK-related kinase 5 (AtCRK5) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 1),CDPK-related kinase 6 (AtCRK6) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK6),CDPK-related kinase 3 (AtCRK3) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 4) (AtCK),CDPK-related kinase 4 (AtCRK4) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK4),CDPK-related kinase 3 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Serine/threonine kinase that phosphorylates histone H3 an GLN1-1. {ECO:0000250, ECO:0000269|PubMed:16472779, ECO:0000269|Ref.1}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 66991,66372,66600,66514,47089 CDPK-related kinase 5 (AtCRK5) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 1),CDPK-related kinase 6 (AtCRK6) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK6),CDPK-related kinase 3 (AtCRK3) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 4) (AtCK),CDPK-related kinase 4 (AtCRK4) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK4),CDPK-related kinase 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; metal ion binding [GO:0046872]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to abscisic acid stimulus [GO:0071215]; intracellular signal transduction [GO:0035556]; leaf senescence [GO:0010150]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672] DEVELOPMENTAL STAGE: During flower development, abundantly present in the apical meristem. During pollen development, there are high levels in pollen mother cells and it accumulates gradually to reach a peak during the tetrad stage. Fades out in mature pollen. Also present in tapetal cells and at stigmatic surface of the stigma. {ECO:0000269|Ref.1}. TISSUE SPECIFICITY: Ubiquitously expressed with higher levels in siliques and roots, especially at the root cap. Particularly present in vascular bundles of stems and leaves. {ECO:0000269|PubMed:16472779, ECO:0000269|Ref.1}. locus:2098705;,locus:2082931;,locus:2062764;,locus:2152876; AT3G50530,AT3G49370,AT2G46700,AT5G24430 CDPK-related protein Os06g0714200 protein (Putative calcium/calmodulin-dependent protein kinase),Os07g0619800 protein (cDNA clone:J013118F09, full insert sequence),Os07g0619800 protein,Os07g0619800 protein (Fragment) Q5Z7T2,Q0D4L2,A0A0P0X968,A0A0P0X9P7 Q5Z7T2_ORYSJ,Q0D4L2_ORYSJ,A0A0P0X968_ORYSJ,A0A0P0X9P7_ORYSJ OJ1136_F03.24 Os06g0714200 OSNPB_060714200,Os07g0619800 Os07g0619800 OsJ_25154 OSNPB_070619800,Os07g0619800 OSNPB_070619800 ENOG411DSSB Q8RXQ4 Q8RXQ4_ARATH Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At1g71840) 43791 Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At1g71840) cytosol [GO:0005829]; preribosome, large subunit precursor [GO:0030687]; unfolded protein binding [GO:0051082]; ribosomal large subunit biogenesis [GO:0042273] locus:2012971; AT1G71840 angio-associated migratory cell protein-like Os03g0685600 protein (Vegetatible incompatibility protein HET-E-1, putative, expressed) (cDNA clone:J033024B20, full insert sequence) Q10F11 Q10F11_ORYSJ LOC_Os03g48090 Os03g0685600 OSNPB_030685600 ENOG411DSSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411DSSA MAX2 Q9SIM9 MAX2_ARATH F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) Increased branching; Long hypocotyl and cotyledonary petioles; Delayed senescence; Resistant to oxidative stress-H. Nam-2001 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Promotes the senescence. Is necessary for responses to strigolactones and karrikins. Contributes to the selective repression of axillary shoots and moderates the branching by regulating negatively the auxin transport in primary stems, in an AXR1-independent manner (PubMed:11487692, PubMed:11874909, PubMed:15737939, PubMed:16546078, PubMed:22357928, PubMed:9351240). Required for the progression of leaf senescence mediated by methyl jasmonate (PubMed:26507893). Required at each node to suppress axillary bud growth (PubMed:17346265). {ECO:0000269|PubMed:11487692, ECO:0000269|PubMed:11874909, ECO:0000269|PubMed:15737939, ECO:0000269|PubMed:16546078, ECO:0000269|PubMed:17346265, ECO:0000269|PubMed:22357928, ECO:0000269|PubMed:26507893, ECO:0000269|PubMed:9351240}. MISCELLANEOUS: 'Oresara' means 'long living' in Korean. {ECO:0000305|PubMed:11487692}. PATHWAY: Protein modification; protein ubiquitination. 77415 F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; cuticle development [GO:0042335]; negative regulation of seed germination [GO:0010187]; positive regulation of response to water deprivation [GO:1902584]; protein ubiquitination [GO:0016567]; regulation of meristem structural organization [GO:0009934]; response to light stimulus [GO:0009416]; response to water deprivation [GO:0009414]; shoot system morphogenesis [GO:0010016] TISSUE SPECIFICITY: Expressed in the vasculature of growing leaves and roots, rosette axillary bud, flowers, siliques, funiculi and stems. {ECO:0000269|PubMed:17346265}. locus:2041499; AT2G42620 F-Box protein F-box/LRR-repeat MAX2 homolog (F-box and leucine-rich repeat MAX2 homolog) (Protein DWARF 3),Os06g0154200 protein (Fragment) Q5VMP0,A0A0P0WSK0 MAX2_ORYSJ,A0A0P0WSK0_ORYSJ D3 Os06g0154200 LOC_Os06g06050 OSJNBa0085L11.6-1,Os06g0154200 OSNPB_060154200 DISRUPTION PHENOTYPE: The tillering dwarf mutant Id3 presents an increase in tiller number and a reduction in plant height which may be due to a reduced apical dominance. {ECO:0000269|PubMed:15659436, ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:18690207}. FUNCTION: Controls tillering by suppressing axillary bud activity. Tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. Is necessary for responses to strigolactones and the establishment of arbuscular mycorrhiza symbiosis in rice. May be involved in the ubiquitin-mediated degradation of specific proteins that activate axillary growth.; FUNCTION: D3 is crucial for establishing arbuscular mycorrhiza (AM) symbiosis in rice, whereas D14 and D14-LIKE are not. Our results suggest distinct roles for these SL-related components in AM symbiosis. ENOG411DSSN DYW10 Q9M4P3 PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial (Protein DYW10) 74819 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial (Protein DYW10) intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mitochondrial RNA modification [GO:1900864] locus:504955435; AT4G16835 Pentatricopeptide repeat-containing protein Os08g0153600 protein (Fragment) A0A0P0XBZ1 A0A0P0XBZ1_ORYSJ Os08g0153600 OSNPB_080153600 ENOG411DSSM Q9LZR8 Y5370_ARATH PAN domain-containing protein At5g03700 53595 PAN domain-containing protein At5g03700 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; recognition of pollen [GO:0048544] locus:2144573; AT5G03700 PAN domain-containing protein Os02g0527900 protein (Receptor protein kinase-like) Q6H6Q2 Q6H6Q2_ORYSJ Os02g0527900 OsJ_06979 OSNPB_020527900 P0458B05.30 P0475F05.10 ENOG411DSSJ ACL5 Q9S7X6 ACL5_ARATH Thermospermine synthase ACAULIS5 (EC 2.5.1.79) DISRUPTION PHENOTYPE: Severe reduction in the length of stem internodes. Increased thickness of veins in leaves and inflorescence stems. Altered morphology of xylem vessel elements. {ECO:0000269|PubMed:15894745, ECO:0000269|PubMed:18599510}. Negative effects of the mutation on cell elongation are also detectable in pedicels siliques and petioles of rosette leaves after transition to reproductive growth.,The cortical microtubules of epidermal cells in the mutant internodes tend to form a more longitudinal array than those in the wild-type internodes.,The mutant initiates vegetative growth and the transition to the inflorescence meristem in the same manner as the wild-type but produces extremely short flowering stems. This phenotype is primarily due to a reduced cell length in the internodes.,Double mutant shows increase in growth of 68% relative to acl5-1 single mutant. Also restores normal liginification.,Same phenotype as acl5-1.,Increased thickness of major veins in juvenile and adult rosette leaves. Adult rosette leaves are smaller and have more veins per square area than those of wild type. Increased vein thickness is attributable to an increased number of both xylem and phloem cells as well as an increased number of procambial cells in between. Polar auxin transport in mutant stems is 66.2% of that in wild type. Mutants are fully fertile and produce normal flowers. Short inflorescence stems; Few flowers-Y. Komeda-2000 FUNCTION: Required for correct xylem specification through regulation of the lifetime of the xylem elements. Prevents premature death of the xylem vessel elements. {ECO:0000269|PubMed:10944107, ECO:0000269|PubMed:17560575, ECO:0000269|PubMed:18599510, ECO:0000269|PubMed:18669523}. MetaCyc:MONOMER-15365; 2.5.1.79; 2.5.1.79 38547 Thermospermine synthase ACAULIS5 (EC 2.5.1.79) cytoplasm [GO:0005737]; spermine synthase activity [GO:0016768]; thermospermine synthase activity [GO:0010487]; auxin polar transport [GO:0009926]; phloem or xylem histogenesis [GO:0010087]; polyamine biosynthetic process [GO:0006596]; xylem vessel member cell differentiation [GO:0048759] DEVELOPMENTAL STAGE: Expressed throughout early globular-staged embryos and during embryogenesis. {ECO:0000269|PubMed:15894745}. TISSUE SPECIFICITY: Highly expressed in stem internodes and roots. Lower levels in young seedlings before flowering and rosette leaves. Expressed in the vascular tissues. Restricted to procambial and/or provascular cells during primary root development and early leaves development. {ECO:0000269|PubMed:10944107, ECO:0000269|PubMed:15894745}. locus:2180816; AT5G19530 synthase Os02g0237100 protein (Putative spermine synthase) Q6EQJ6 Q6EQJ6_ORYSJ Os02g0237100 Os02g0237100 OJ1077_A12.30 OSJNBb0006L10.5 OSNPB_020237100 ENOG411DSSK F11C1_180 Q9FGC8,Q9SND3 Q9FGC8_ARATH,Q9SND3_ARATH At5g67020 (Emb|CAB62313.1),At3g50340 (Uncharacterized protein At3g50340) (Uncharacterized protein F11C1_180) 43629,44303 At5g67020 (Emb|CAB62313.1),At3g50340 (Uncharacterized protein At3g50340) (Uncharacterized protein F11C1_180) locus:2158128;,locus:2074870; AT5G67020,AT3G50340 Inherit from NOG: expressed protein Os09g0456700 protein,Os08g0472400 protein Q67TQ0,A0A0P0XGV0 Q67TQ0_ORYSJ,A0A0P0XGV0_ORYSJ Os09g0456700 B1342C04.33 OSNPB_090456700,Os08g0472400 OSNPB_080472400 ENOG411DSSH WRKY9 Q9C9F0 WRKY9_ARATH Probable WRKY transcription factor 9 (WRKY DNA-binding protein 9) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 42743 Probable WRKY transcription factor 9 (WRKY DNA-binding protein 9) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription, DNA-templated [GO:0006351] locus:2199317; AT1G68150 WRKY transcription factor Os02g0770500 protein A0A0P0VQA2 A0A0P0VQA2_ORYSJ Os02g0770500 OSNPB_020770500 ENOG411DSSI EMB2754 Q8L5Y0,A0A1P8B4G5 Q8L5Y0_ARATH,A0A1P8B4G5_ARATH Uncharacterized protein At4g36630 (Vacuolar sorting protein 39),Vacuolar sorting protein 39 Embryo defective; Cotyledon-D. Meinke-2004 FUNCTION: Essential protein required during embryogenesis (PubMed:15266054, PubMed:29463724). Believed to act in part as a component of the putative HOPS endosomal tethering complex. HOPS is required for the central vacuole formation (PubMed:29463724). May play a role in clustering and fusion of late endosomes and lysosomes. Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Required for fusion of endosomes and autophagosomes with lysosomes (By similarity). {ECO:0000250|UniProtKB:Q96JC1, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:29463724}. 110639,101207 Uncharacterized protein At4g36630 (Vacuolar sorting protein 39),Vacuolar sorting protein 39 intracellular [GO:0005622]; plasmodesma [GO:0009506]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],intracellular [GO:0005622]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2115355; AT4G36630 vam6 Vps39-like protein-like Os04g0389901 protein,Expressed protein (Os03g0715500 protein),Os03g0715500 protein (Fragment) B9FEW5,Q10DX1,A0A0P0W2Y3 B9FEW5_ORYSJ,Q10DX1_ORYSJ,A0A0P0W2Y3_ORYSJ Os04g0389901 OsJ_14583 OSNPB_040389901,Os03g0715500 LOC_Os03g50740 Os03g0715500 OSNPB_030715500,Os03g0715500 OSNPB_030715500 ENOG411EJXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel linked together by a central stalk and a peripheral stalk. During catalysis ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity) NA NA NA NA NA NA NA ENOG411EEDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411EEDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EEDN RDO5 Q9T010,F4JN82 P2C54_ARATH,F4JN82_ARATH Probable protein phosphatase 2C 54 (AtPP2C54) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 31787,23639 Probable protein phosphatase 2C 54 (AtPP2C54) (EC 3.1.3.16),Protein phosphatase 2C family protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine phosphatase activity [GO:0004722]; pseudophosphatase activity [GO:0001691]; positive regulation of seed dormancy process [GO:1902040]; seed dormancy process [GO:0010162],protein serine/threonine phosphatase activity [GO:0004722] locus:2136153; AT4G11040 phosphatase 2C NA NA NA NA NA NA NA ENOG411EEDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EEDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EEDK Q94EI6,A0A1P8B234,A0A1P8B277 Q94EI6_ARATH,A0A1P8B234_ARATH,A0A1P8B277_ARATH At2g40630/T2P4.2 (Expressed protein) (Uncharacterized conserved protein (UCP030365)),Uncharacterized conserved protein (UCP030365) 58119,55043,42126 At2g40630/T2P4.2 (Expressed protein) (Uncharacterized conserved protein (UCP030365)),Uncharacterized conserved protein (UCP030365) chloroplast [GO:0009507] locus:2061858; AT2G40630 NA NA NA NA NA NA NA NA ENOG411EEDH MGH6.10,T6H22.18 Q9LD39,Q9SGT0 Q9LD39_ARATH,Q9SGT0_ARATH At3g12970 (Serine/arginine repetitive matrix-like protein),At1g56020 (F14J16.33) (Serine/arginine repetitive matrix-like protein) (T6H22.18 protein) 41508,43134 At3g12970 (Serine/arginine repetitive matrix-like protein),At1g56020 (F14J16.33) (Serine/arginine repetitive matrix-like protein) (T6H22.18 protein) locus:2089275;,locus:2012065; AT3G12970,AT1G56020 NA NA NA NA NA NA NA NA ENOG411EEDI Q9M9R3 Q9M9R3_ARATH Ankyrin repeat family protein (F14L17.28 protein) 48821 Ankyrin repeat family protein (F14L17.28 protein) integral component of membrane [GO:0016021] locus:2012557; AT1G14500 ANK NA NA NA NA NA NA NA ENOG411EED3 SSL11,SSL12 P92976,P94111,Q9C9C2 SSL11_ARATH,SSL12_ARATH,Q9C9C2_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 11 (AtSSL11) (EC 4.3.3.2) (Strictosidine synthase 12) (AtSS12) (Strictosidine synthase 3) (SS-3),Protein STRICTOSIDINE SYNTHASE-LIKE 12 (AtSSL12) (EC 4.3.3.2) (Strictosidine synthase 1) (SS-1) (Strictosidine synthase 13) (AtSS13),At1g74010 (Calcium-dependent phosphotriesterase superfamily protein) (Putative strictosidine synthase) (Putative strictosidine synthase; 39161-40746) FUNCTION: Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. {ECO:0000250}. PATHWAY: Alkaloid biosynthesis; 3alpha(S)-strictosidine biosynthesis; 3alpha(S)-strictosidine from secologanin and tryptamine: step 1/1. ARA:AT1G74000-MONOMER;,ARA:AT1G74020-MONOMER;,ARA:AT1G74010-MONOMER; 4.3.3.2 34667,35293,34184 Protein STRICTOSIDINE SYNTHASE-LIKE 11 (AtSSL11) (EC 4.3.3.2) (Strictosidine synthase 12) (AtSS12) (Strictosidine synthase 3) (SS-3),Protein STRICTOSIDINE SYNTHASE-LIKE 12 (AtSSL12) (EC 4.3.3.2) (Strictosidine synthase 1) (SS-1) (Strictosidine synthase 13) (AtSS13),At1g74010 (Calcium-dependent phosphotriesterase superfamily protein) (Putative strictosidine synthase) (Putative strictosidine synthase; 39161-40746) cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; strictosidine synthase activity [GO:0016844]; alkaloid metabolic process [GO:0009820]; biosynthetic process [GO:0009058],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; lyase activity [GO:0016829]; alkaloid metabolic process [GO:0009820]; biosynthetic process [GO:0009058]; cellular response to potassium ion starvation [GO:0051365]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; hydrolase activity, acting on ester bonds [GO:0016788]; strictosidine synthase activity [GO:0016844]; biosynthetic process [GO:0009058] locus:2031511;,locus:2031486;,locus:2031496; AT1G74000,AT1G74020,AT1G74010 Strictosidine synthase NA NA NA NA NA NA NA ENOG411E4IA HINT3 F4K1R2,A0A1P8BAL2,A0A1P8BAL8 HINT3_ARATH,A0A1P8BAL2_ARATH,A0A1P8BAL8_ARATH Adenylylsulfatase HINT3 (EC 3.6.2.1) (Histidine triad nucleotide-binding protein 3),Histidine triad nucleotide-binding 3 FUNCTION: Possesses adenylylsulfatase activity in vitro. {ECO:0000269|PubMed:19896942}. 3.6.2.1 21558,14966,15696 Adenylylsulfatase HINT3 (EC 3.6.2.1) (Histidine triad nucleotide-binding protein 3),Histidine triad nucleotide-binding 3 peroxisome [GO:0005777]; adenylylsulfatase activity [GO:0047627]; nucleotide binding [GO:0000166]; purine ribonucleotide metabolic process [GO:0009150]; sulfur compound metabolic process [GO:0006790],catalytic activity [GO:0003824] locus:1006230576; AT5G48545 histidine triad family protein Histidine triad family protein, putative, expressed (Os12g0233300 protein) (cDNA clone:001-014-A08, full insert sequence),Os11g0295000 protein Q2QVE2,C7J982 Q2QVE2_ORYSJ,C7J982_ORYSJ Os12g0233300 LOC_Os12g13120 Os12g0233300 OsJ_35655 OSNPB_120233300,Os11g0295000 OSNPB_110295000 ENOG411E4IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0638000 protein (cDNA clone:002-108-F09, full insert sequence) Q6H5V6 Q6H5V6_ORYSJ Os02g0638000 OsJ_07660 OSJNBa0014E22.25 OSNPB_020638000 P0010C01.1 ENOG411E4IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Yippee NA NA NA NA NA NA NA ENOG411E4IN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Zinc finger protein CO3 (Protein CONSTANS-like CO3) (OsCO3) O82117 CO3_ORYSJ CO3 Os09g0240200 LOC_Os09g06464 OJ1178_D01.3 FUNCTION: Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}. MISCELLANEOUS: Plants over-expressing CO3 display late flowering under short day (SD) conditions. {ECO:0000269|PubMed:18449564}. ENOG411E4II RAP2-3 P42736 RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 (Cadmium-induced protein AS30) (Ethylene response factor 72) (ERF72) (Ethylene-responsive element binding protein) (AtEBP) (Protein RELATED TO APETALA2 3) (Related to AP2 3) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. 27758 Ethylene-responsive transcription factor RAP2-3 (Cadmium-induced protein AS30) (Ethylene response factor 72) (ERF72) (Ethylene-responsive element binding protein) (AtEBP) (Protein RELATED TO APETALA2 3) (Related to AP2 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell death [GO:0008219]; ethylene-activated signaling pathway [GO:0009873]; heat acclimation [GO:0010286]; positive regulation of transcription, DNA-templated [GO:0045893]; response to cytokinin [GO:0009735]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to other organism [GO:0051707]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. locus:2089368; AT3G16770 Transcription factor NA NA NA NA NA NA NA ENOG411E4IK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0281100 protein (cDNA clone:002-145-B03, full insert sequence) Q5NAB4 Q5NAB4_ORYSJ Os01g0281100 B1085F09.19 OSNPB_010281100 ENOG411E4IW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family OSJNBa0005N02.5 protein (Os04g0566700 protein) Q7XSA1 Q7XSA1_ORYSJ OSJNBa0005N02.5 Os04g0566700 OSNPB_040566700 ENOG411E4IP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF861) Os04g0509400 protein (cDNA, clone: J065030M05, full insert sequence) Q0JBU4 Q0JBU4_ORYSJ Os04g0509400 Os04g0509400 OSNPB_040509400 ENOG411E4IX SPT42,SPT4-1 Q8LCQ3,Q94C60,F4KAT2,F4KB46 SPT41_ARATH,SPT42_ARATH,F4KAT2_ARATH,F4KB46_ARATH Transcription elongation factor SPT4 homolog 1,Transcription elongation factor SPT4 homolog 2,SPT4 homolog 2,Transcription elongation factor SPT4 homolog FUNCTION: May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity). {ECO:0000250}.,FUNCTION: May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. {ECO:0000256|PIRNR:PIRNR025023}. R-ATH-113418;R-ATH-674695;R-ATH-6796648; 13369,13365,10789,13285 Transcription elongation factor SPT4 homolog 1,Transcription elongation factor SPT4 homolog 2,SPT4 homolog 2,Transcription elongation factor SPT4 homolog DSIF complex [GO:0032044]; RNA polymerase II core binding [GO:0000993]; single-stranded RNA binding [GO:0003727]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; chromatin organization [GO:0006325]; mRNA processing [GO:0006397]; positive regulation of DNA-templated transcription, elongation [GO:0032786]; regulation of transcription elongation from RNA polymerase II promoter [GO:0034243]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; zinc ion binding [GO:0008270]; positive regulation of DNA-templated transcription, elongation [GO:0032786],nucleus [GO:0005634]; zinc ion binding [GO:0008270]; positive regulation of DNA-templated transcription, elongation [GO:0032786]; transcription, DNA-templated [GO:0006351] locus:505006588;,locus:2160579; AT5G08565,AT5G63670 Transcription elongation factor Transcription elongation factor SPT4 homolog Q8LHK9 Q8LHK9_ORYSJ P0524E08.113 Os07g0623400 OsJ_25179 OSNPB_070623400 FUNCTION: May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. {ECO:0000256|PIRNR:PIRNR025023}. ENOG411E4IY Q6ICW8 Q6ICW8_ARATH At4g25180 (RNA polymerase III RPC4) (Uncharacterized protein At4g25180) 34250 At4g25180 (RNA polymerase III RPC4) (Uncharacterized protein At4g25180) DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase III promoter [GO:0006383] locus:2122629; AT4G25180 RNA polymerase III RPC4 NA NA NA NA NA NA NA ENOG411EJU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ATPase class NA NA NA NA NA NA NA ENOG411E4I2 ERF071 O22259 ERF71_ARATH Ethylene-responsive transcription factor ERF071 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 19347 Ethylene-responsive transcription factor ERF071 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to anoxia [GO:0034059]; transcription, DNA-templated [GO:0006351] locus:2061956; AT2G47520 Transcription factor Os01g0313300 protein (Putative ethylene response factor 2) (cDNA clone:J023075G11, full insert sequence) Q8LQ87 Q8LQ87_ORYSJ Os01g0313300 Os01g0313300 B1011A07.39 OSNPB_010313300 ENOG411E4I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Os05g0149100 protein (cDNA clone:002-135-B04, full insert sequence) Q65XE8 Q65XE8_ORYSJ Os05g0149100 OJ1504_G04.5 OSNPB_050149100 ENOG411E4I8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E340 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger A20 and AN1 domain-containing stress-associated protein Zinc finger A20 and AN1 domain-containing stress-associated protein 9 (OsSAP9) Q7Y1W9 SAP9_ORYSJ SAP9 ZFP33 Os07g0168800 LOC_Os07g07350 OsJ_23237 OSJNBa0050F10.11 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E342 C0Z2Z6,A0A1P8B278,F4IG50,F4IG49 C0Z2Z6_ARATH,A0A1P8B278_ARATH,F4IG50_ARATH,F4IG49_ARATH AT2G45380 protein (Myeloid leukemia factor),Myeloid leukemia factor 30328,35015,20622,55151 AT2G45380 protein (Myeloid leukemia factor),Myeloid leukemia factor locus:2050817; AT2G45380 NA NA NA NA NA NA NA NA ENOG411E344 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA12 (Indoleacetic acid-induced protein 12) Q75GK1 IAA12_ORYSJ IAA12 Os03g0633800 LOC_Os03g43410 OsJ_11822 OSJNBa0010N03.16 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E34R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0648600 protein (cDNA clone:002-141-C11, full insert sequence),Os03g0310900 protein (Fragment) Q0J9J7,Q0DSF4 Q0J9J7_ORYSJ,Q0DSF4_ORYSJ Os04g0648600 Os04g0648600 OSNPB_040648600,Os03g0310900 Os03g0310900 OSNPB_030310900 ENOG411E34S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0451300 protein (cDNA clone:002-142-A12, full insert sequence) Q53WP8 Q53WP8_ORYSJ Os05g0451300 Os05g0451300 OJ1576_F01.7 OsJ_18754 OSNPB_050451300 ENOG411E34X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0472700 protein A0A0P0WBP1 A0A0P0WBP1_ORYSJ Os04g0472700 OSNPB_040472700 ENOG411E34Y PP2B2 Q9ZVR5 PP2B2_ARATH Putative F-box protein PP2-B2 (Protein PHLOEM PROTEIN 2-LIKE B2) (AtPP2-B2) 34930 Putative F-box protein PP2-B2 (Protein PHLOEM PROTEIN 2-LIKE B2) (AtPP2-B2) carbohydrate binding [GO:0030246] locus:2056196; AT2G02250 Inherit from euNOG: F-box protein F-box domain containing protein, expressed (Os12g0129700 protein) (cDNA clone:J013158N08, full insert sequence),Os02g0813083 protein,F-box domain containing protein, expressed (Os12g0131400 protein) (cDNA, clone: J100062A04, full insert sequence) Q2QY75,A3ACK8,Q2QY61 Q2QY75_ORYSJ,A3ACK8_ORYSJ,Q2QY61_ORYSJ LOC_Os12g03594 Os12g0129700 OSNPB_120129700,Os02g0813083 OsJ_08837 OSNPB_020813083,Os12g0131400 LOC_Os12g03740 OsJ_35123 OSNPB_120131400 ENOG411E34A O82355 LEA2R_ARATH Desiccation-related protein At2g46140 (LEA type-2 family protein At2g46140) 17846 Desiccation-related protein At2g46140 (LEA type-2 family protein At2g46140) apoplast [GO:0048046]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; response to desiccation [GO:0009269] locus:2062933; AT2G46140 WHy 'putative late embryogenesis abundant protein, LEA14-A (LEA5) (Os05g0584200 protein) (Putative late embryogenesis abundant protein) (cDNA clone:001-040-B08, full insert sequence) (cDNA clone:J013050C18, full insert sequence),Os01g0624400 protein (Fragment) Q75HZ0,A0A0N7KDC6 Q75HZ0_ORYSJ,A0A0N7KDC6_ORYSJ Os05g0584200 OsJ_19700 OSJNBa0009C07.1 OSJNBb0035N21.4 OSNPB_050584200,Os01g0624400 OSNPB_010624400 ENOG411E34B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E34D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E34K IAA4,IAA3,SHY2 P33077,Q38822,A0A1P8AT43 IAA4_ARATH,IAA3_ARATH,A0A1P8AT43_ARATH Auxin-responsive protein IAA4 (Auxin-induced protein AUX2-11) (Indoleacetic acid-induced protein 4),Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) (Short hypocotyl) (Suppressor of HY2),Auxin-responsive protein Complete loss of root gravitropism-J. Reed-1999 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Plays a central role in auxin regulation of root growth, in gravitropism, and in lateral root formation (PubMed:9895319). Regulated by an auxin-induced protein turnover (PubMed:14617065). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. When activated by cytokinin, restricts the expression of the PIN genes to the vascular transition zone (PubMed:19039136). Induction of SHY2 in the vascular transition zone restricts BRX expression to down-regulate PIN3 and thus limit meristem growth, but proper SHY2 expression requires BRX (PubMed:21149702). Involved in meristem growth and in determining its size (PubMed:20605455). May participate in strigolactone signaling to regulate meristem size and lateral root formation (PubMed:23425316). {ECO:0000269|PubMed:11884676, ECO:0000269|PubMed:12036262, ECO:0000269|PubMed:14617065, ECO:0000269|PubMed:19039136, ECO:0000269|PubMed:20605455, ECO:0000269|PubMed:21149702, ECO:0000269|PubMed:23425316, ECO:0000269|PubMed:9895319}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 20975,21520,32513 Auxin-responsive protein IAA4 (Auxin-induced protein AUX2-11) (Indoleacetic acid-induced protein 4),Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) (Short hypocotyl) (Suppressor of HY2),Auxin-responsive protein nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: The level of expression increases during meristem growth, reaches a maximum at 5 days post germination and subsequently remaines constant in time. {ECO:0000269|PubMed:20605455}. TISSUE SPECIFICITY: Preferentially expressed in stems, leaves and flowers. {ECO:0000269|PubMed:7658471}.,TISSUE SPECIFICITY: Highly expressed in stems and flowers (PubMed:7658471). Expressed in hypocotyls, cotyledons and leaves, but barely detected in roots (PubMed:11884676). Expressed in root tips (PubMed:14534134). In the root meristem, specifically detected at the vascular tissue transition zone (PubMed:19039136). {ECO:0000269|PubMed:11884676, ECO:0000269|PubMed:14534134, ECO:0000269|PubMed:19039136, ECO:0000269|PubMed:7658471}. locus:2170862;,locus:2018379; AT5G43700,AT1G04240 AUX/IAA family NA NA NA NA NA NA NA ENOG411EK41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PDS5 regulator of cohesion maintenance homolog NA NA NA NA NA NA NA ENOG411EMQ1 A0A1I9LL91,A0A1I9LL90,F4IYH6,A0A1I9LL92 A0A1I9LL91_ARATH,A0A1I9LL90_ARATH,F4IYH6_ARATH,A0A1I9LL92_ARATH RING/FYVE/PHD zinc finger superfamily protein 103096,85006,108865,90225 RING/FYVE/PHD zinc finger superfamily protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872],metal ion binding [GO:0046872] locus:2075492; AT3G02890 PHD NA NA NA NA NA NA NA ENOG411EMQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA replication complex GINS protein NA NA NA NA NA NA NA ENOG411EMQ6 NUDT23,NUDX23 P93740,A0A1P8AZL7 NUD23_ARATH,A0A1P8AZL7_ARATH Nudix hydrolase 23, chloroplastic (AtNUDT23) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (FAD diphosphatase) (EC 3.6.1.18),Nudix hydrolase homolog 23 FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use FAD and ADP-ribose as substrates. {ECO:0000269|PubMed:18815383}. ARA:AT2G42070-MONOMER; 3.6.1.-; 3.6.1.13; 3.6.1.18 30794,29740 Nudix hydrolase 23, chloroplastic (AtNUDT23) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (FAD diphosphatase) (EC 3.6.1.18),Nudix hydrolase homolog 23 chloroplast [GO:0009507]; ADP-ribose diphosphatase activity [GO:0047631]; FAD diphosphatase activity [GO:0047884]; metal ion binding [GO:0046872]; flavin-containing compound metabolic process [GO:0042726]; response to light stimulus [GO:0009416],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2064632; AT2G42070 Nudix hydrolase Os09g0553300 protein Q0IZS1 Q0IZS1_ORYSJ Os09g0553300 OSNPB_090553300 ENOG411EMQ9 Q9LFC0 Q9LFC0_ARATH At5g01160 (RING/U-box superfamily protein) (Uncharacterized protein At5g01160) (Uncharacterized protein F7J8_140) 39772 At5g01160 (RING/U-box superfamily protein) (Uncharacterized protein At5g01160) (Uncharacterized protein F7J8_140) nucleic acid binding [GO:0003676]; ubiquitin protein ligase activity [GO:0061630]; regulation of cell adhesion [GO:0030155] locus:2150094; AT5G01160 RING NA NA NA NA NA NA NA ENOG411EMQQ AL6 A0A1P8AYM4 A0A1P8AYM4_ARATH Alfin-like 6 29156 Alfin-like 6 histone binding [GO:0042393]; regulation of transcription, DNA-templated [GO:0006355] Phd finger protein PHD finger protein ALFIN-LIKE 4,Os01g0158800 protein Q7XUW3,A0A0P0UZ01 ALFL4_ORYSJ,A0A0P0UZ01_ORYSJ Os04g0444900 LOC_Os04g36730 OsJ_14937 OSJNBa0027P08.7,Os01g0158800 OSNPB_010158800 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. ENOG411EMQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD finger protein PHD finger protein ALFIN-LIKE 7,PHD finger protein ALFIN-LIKE 1 Q6Z7F4,Q75IR6 ALFL7_ORYSJ,ALFL1_ORYSJ Os02g0564100 LOC_Os02g35600 OJ1712_E04.22 OsJ_07167 P0020C11.11,Os05g0163100 LOC_Os05g07040 OsJ_17228 OSJNBb0099P06.7 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. ENOG411EMQT Q9LFY0 Q9LFY0_ARATH 5'-AMP-activated protein kinase-like protein (T7N9.13) FUNCTION: Involved in starch granule initiation in leaf chloroplasts. Binds and delivers suitable maltooligosaccharide substrates to starch synthase 4 (SS4). {ECO:0000269|PubMed:28684429}. 59199 5'-AMP-activated protein kinase-like protein (T7N9.13) kinase activity [GO:0016301] locus:2205819; AT1G27070 NA NA NA NA NA NA NA NA ENOG411EMQW MRA19.13 F4KEM0,F4JRP0,F4KEL9 STIL4_ARATH,STIL3_ARATH,F4KEL9_ARATH Protein STICHEL-like 4,Protein STICHEL-like 3,AAA-type ATPase family protein 108143,121792,106795 Protein STICHEL-like 4,Protein STICHEL-like 3,AAA-type ATPase family protein DNA polymerase III complex [GO:0009360]; DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261],DNA polymerase III complex [GO:0009360]; DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261],DNA polymerase III complex [GO:0009360]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA replication [GO:0006260] locus:2172013;,locus:2124122; AT5G45720,AT4G18820 DNA-directed DNA polymerase activity NA NA NA NA NA NA NA ENOG411EMQY STI O64728 STI_ARATH Protein STICHEL DISRUPTION PHENOTYPE: Shows trichomes with exclusively no branching. {ECO:0000269|PubMed:12586888, ECO:0000269|PubMed:8313475}. The mutant showed cluster-like trichomes lacking additional branches.,Exclusively produces unbranched trichomes.,Trichomes have two branch points.,Partial suppression of the strong sti-EMU phenotype resulting in sta-like trichomes.,Trichomes have one branch point resting on a long stalk.,No branching of trichomes.,Most trichomes do not develop any branch points.,Larger but unbranched trichome cells compared to wild type. Unbranched trichomes-M. Hulskamp-2003 FUNCTION: Acts as a key regulator of trichome branching through an endoreduplication-independent pathway. {ECO:0000269|PubMed:10572032, ECO:0000269|PubMed:12586888, ECO:0000269|PubMed:18477400, ECO:0000269|PubMed:22210898, ECO:0000269|PubMed:9367433}. 135303 Protein STICHEL DNA polymerase III complex [GO:0009360]; DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261]; trichome branching [GO:0010091]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12586888}. locus:2065299; AT2G02480 DNA polymerase III subunits gamma and tau domain III NA NA NA NA NA NA NA ENOG411EMQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA polymerase III subunits gamma and tau domain III Os08g0120200 protein (Fragment) A0A0P0XBA8 A0A0P0XBA8_ORYSJ Os08g0120200 OSNPB_080120200 ENOG411EMQZ F4JRP8,A0A1P8B4U5 STIL2_ARATH,A0A1P8B4U5_ARATH Protein STICHEL-like 2,AAA-type ATPase family protein 93834,89320 Protein STICHEL-like 2,AAA-type ATPase family protein DNA polymerase III complex [GO:0009360]; DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261],DNA polymerase III complex [GO:0009360]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA replication [GO:0006260] locus:2121934; AT4G24790 DNA polymerase III subunits gamma and tau domain III NA NA NA NA NA NA NA ENOG411EMQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os10g0494500 protein (Fragment) A0A0P0XWM7 A0A0P0XWM7_ORYSJ Os10g0494500 OSNPB_100494500 ENOG411EMQB F4J509,F4J510,F4J511 F4J509_ARATH,F4J510_ARATH,F4J511_ARATH Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 41468,41568,41600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein hydrolase activity [GO:0016787]; metabolic process [GO:0008152],cytoplasm [GO:0005737]; phosphatase activity [GO:0016791],hydrolase activity [GO:0016787] locus:2085507; AT3G10970 NA NA NA NA NA NA NA NA ENOG411EMQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFS2N Os02g0742100 protein (Fragment),Os02g0742050 protein Q0DXN7,C7IZ18,A0A0P0VPQ7 Q0DXN7_ORYSJ,C7IZ18_ORYSJ,A0A0P0VPQ7_ORYSJ Os02g0742100 Os02g0742100 OSNPB_020742100,Os02g0742050 Os02g0742050 OSNPB_020742050,Os02g0742100 OSNPB_020742100 ENOG411EMQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411EMQK AL4,AL5 O81488,A0A1P8BEQ5 ALFL4_ARATH,A0A1P8BEQ5_ARATH PHD finger protein ALFIN-LIKE 4 (Protein AL4),Alfin-like 5 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. 28779,21755 PHD finger protein ALFIN-LIKE 4 (Protein AL4),Alfin-like 5 cytosol [GO:0005829]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],histone binding [GO:0042393]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19154204}. locus:2179709; AT5G26210 Domain of unknown function (DUF3594) PHD finger protein ALFIN-LIKE 9 Q6YTY3 ALFL9_ORYSJ Os07g0608400 LOC_Os07g41740 OsJ_25070 OSJNBa0072I06.37 OSJNBb0018L13.1 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. ENOG411EMQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMQM AL1,AL2 Q9FFF5,Q9SRM4,F4J673 ALFL1_ARATH,ALFL2_ARATH,F4J673_ARATH PHD finger protein ALFIN-LIKE 1 (Protein AL1),PHD finger protein ALFIN-LIKE 2 (Protein AL2) [Cleaved into: PHD finger protein ALFIN-LIKE 2, N-terminally processed],Alfin-like 2 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. 27223,27832,26808 PHD finger protein ALFIN-LIKE 1 (Protein AL1),PHD finger protein ALFIN-LIKE 2 (Protein AL2) [Cleaved into: PHD finger protein ALFIN-LIKE 2, N-terminally processed],Alfin-like 2 nucleus [GO:0005634]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],histone binding [GO:0042393]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19154204}. locus:2169707;,locus:2074663; AT5G05610,AT3G11200 PHD finger protein Os05g0163100 protein (Fragment) A0A0P0WIF4 A0A0P0WIF4_ORYSJ Os05g0163100 OSNPB_050163100 ENOG411EMQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD finger protein PHD finger protein ALFIN-LIKE 2,PHD finger protein ALFIN-LIKE 3,Nucleic acid binding protein-like (Os07g0233300 protein) (cDNA clone:002-176-E03, full insert sequence),Os07g0233300 protein (Fragment) Q8H383,Q84TV4,Q7XHN6,A0A0P0X471 ALFL2_ORYSJ,ALFL3_ORYSJ,Q7XHN6_ORYSJ,A0A0P0X471_ORYSJ Os07g0233300 LOC_Os07g12910 OsJ_23628 OSJNBa0061L20.107-1,Os03g0818300 LOC_Os03g60390 OJ1754_E06.2 OsJ_13123 OSJNBa0094J08.5,OSJNBa0061L20.107-2 Os07g0233300 OSNPB_070233300,Os07g0233300 OSNPB_070233300 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. ENOG411EDIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EDIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHA2 NA NA NA NA NA NA NA ENOG411EDIV Q3EBR4,A0A1P8B150 Y2394_ARATH,A0A1P8B150_ARATH Putative receptor-like protein kinase At2g30940 (EC 2.7.11.1),Protein kinase superfamily protein 2.7.11.1 51829,51541 Putative receptor-like protein kinase At2g30940 (EC 2.7.11.1),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2052791; AT2G30940 STYKc NA NA NA NA NA NA NA ENOG411EDIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EDIQ TET7 Q9SUD4 TET7_ARATH Tetraspanin-7 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 29932 Tetraspanin-7 integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2132992; AT4G28050 Tetraspanin family NA NA NA NA NA NA NA ENOG411EDIR F14P22.10 F4J5U9,Q9M2I2,Q58FV5,Q9M2H5,Q9M2H4,B3H671,A0A1I9LMA7,F4J4A2,A0A1I9LPK2 MCC30_ARATH,MCC23_ARATH,MCC22_ARATH,MCC29_ARATH,Q9M2H4_ARATH,B3H671_ARATH,A0A1I9LMA7_ARATH,F4J4A2_ARATH,A0A1I9LPK2_ARATH MATH domain and coiled-coil domain-containing protein At3g58430 (RTM3-like protein At3g58430),MATH domain and coiled-coil domain-containing protein At3g58340 (RTM3-like protein At3g58340),MATH domain and coiled-coil domain-containing protein At3g58280 (RTM3-like protein At3g58280),MATH domain and coiled-coil domain-containing protein At3g58410 (RTM3-like protein At3g58410),TRAF-like superfamily protein (Uncharacterized protein F14P22.10),TRAF-like family protein,TRAF-like superfamily protein 37506,37278,34220,37250,33472,40883,29533,28256,36165 MATH domain and coiled-coil domain-containing protein At3g58430 (RTM3-like protein At3g58430),MATH domain and coiled-coil domain-containing protein At3g58340 (RTM3-like protein At3g58340),MATH domain and coiled-coil domain-containing protein At3g58280 (RTM3-like protein At3g58280),MATH domain and coiled-coil domain-containing protein At3g58410 (RTM3-like protein At3g58410),TRAF-like superfamily protein (Uncharacterized protein F14P22.10),TRAF-like family protein,TRAF-like superfamily protein integral component of membrane [GO:0016021] locus:2076356;,locus:2085365;,locus:2085395;,locus:2085345;,locus:2076346;,locus:504955615; AT3G58430,AT3G58340,AT3G58280,AT3G58410,AT3G58420,AT3G58220,AT3G44805 MATH domain NA NA NA NA NA NA NA ENOG411EDIS HLL Q84JG5,A0A1P8AQK3 HLL_ARATH,A0A1P8AQK3_ARATH 50S ribosomal protein HLL, mitochondrial (Protein HUELLENLOS),Ribosomal protein L14p/L23e family protein DISRUPTION PHENOTYPE: Female-sterility due to abnormal gynoecium and ovule growth and development with highly reduced integuments and collapsed cells in the distal regions of the ovule primordia. Slight reduction in the rate of growth and size of the pistil. {ECO:0000269|PubMed:11752383, ECO:0000269|PubMed:9636071}. Abnormal integuments; Female sterile-C. Gasser-2001 FUNCTION: Binds to 23S rRNA in mitochondrion (By similarity). Required for the formation of the proximal region of the ovule primordium during floral organogenesis, thus participating in patterning and growth of ovule. Also regulates the initiation and/or maintenance of integument and embryo sac ontogenesis. Prevents inappropriate cell death in the young ovule. {ECO:0000250, ECO:0000269|PubMed:11752383, ECO:0000269|PubMed:22914576, ECO:0000269|PubMed:9636071}. 21160,19106 50S ribosomal protein HLL, mitochondrial (Protein HUELLENLOS),Ribosomal protein L14p/L23e family protein mitochondrial large ribosomal subunit [GO:0005762]; mitochondrion [GO:0005739]; large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735]; embryo sac development [GO:0009553]; integument development [GO:0080060]; negative regulation of cell death [GO:0060548]; plant ovule development [GO:0048481]; response to brassinosteroid [GO:0009741]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] TISSUE SPECIFICITY: Mostly expressed in pistils and inflorescences, including floral organs and meristems, and, to a lower extent, in leaves. {ECO:0000269|PubMed:11752383}. locus:2007913; AT1G17560 Ribosomal protein L14p/L23e NA NA NA NA NA NA NA ENOG411EDIX LNG2 Q9S823,A0A1I9LR84,A0A1I9LR85 LNG2_ARATH,A0A1I9LR84_ARATH,A0A1I9LR85_ARATH Protein LONGIFOLIA 2 (Protein TON1 RECRUITING MOTIF 1),Longifolia2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the lng1 and lng2 double mutant shows reduced length of cotyledons, rosette leaves, siliques and flowers. {ECO:0000269|PubMed:17038516}. FUNCTION: In association with LNG1, regulates leaf morphology by promoting longitudinal polar cell elongation independently of ROT3. Associates with microtubules and recruits TON1A and TON1B to the cytoskeleton through its C-terminus. {ECO:0000269|PubMed:17038516, ECO:0000269|PubMed:22286137}. 101628,75265,70546 Protein LONGIFOLIA 2 (Protein TON1 RECRUITING MOTIF 1),Longifolia2 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; microtubule binding [GO:0008017]; regulation of monopolar cell growth [GO:0051513],regulation of monopolar cell growth [GO:0051513] locus:2076557; AT3G02170 NA NA NA NA NA NA NA NA ENOG411EDIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain Os12g0199500 protein A0A0P0Y801 A0A0P0Y801_ORYSJ Os12g0199500 OSNPB_120199500 ENOG411EDIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Malic_M NA NA NA NA NA NA NA ENOG411EDIE SCPL3,SCPL8,SCPL10,SCPL12,SCPL13,SCPL2,SCPL4,SCPL16,SCPL5,SCPL11,SCPL1,SCPL6,SCPL9,scpl1,scpl3,scpl5,SNG1,SCPL7,scpl4 Q9CAU1,Q8RUW5,O64810,O81009,Q8H780,Q9CAU3,Q9CAU4,Q9C7D4,Q9CAU2,Q2V465,Q8RWJ6,Q9CAU0,O64811,A0A1P8BEN8,A0A1P8AWM7,A0A1P8B0V9,A0A1P8BEM4,A0A1P8B1W3,A0A1P8AXC6,A0A1P8AW61,A0A1P8AW04,A8MQW0,F4IKI5,A8MQP0,Q3EBW0,A0A1I9LLH5,A8MR78,A8MQS0,A8MQG4,F4ILE5,A0A1P8AVE3,F4IKK4,A0A178V9Y2,A0A1P8AVA6 SCP3_ARATH,SCP8_ARATH,SCP10_ARATH,SCP12_ARATH,SCP13_ARATH,SCP2_ARATH,SCP4_ARATH,SCP16_ARATH,SCP5_ARATH,SCP11_ARATH,SCP1_ARATH,SCP6_ARATH,SCP9_ARATH,A0A1P8BEN8_ARATH,A0A1P8AWM7_ARATH,A0A1P8B0V9_ARATH,A0A1P8BEM4_ARATH,A0A1P8B1W3_ARATH,A0A1P8AXC6_ARATH,A0A1P8AW61_ARATH,A0A1P8AW04_ARATH,A8MQW0_ARATH,F4IKI5_ARATH,A8MQP0_ARATH,Q3EBW0_ARATH,A0A1I9LLH5_ARATH,A8MR78_ARATH,A8MQS0_ARATH,A8MQG4_ARATH,F4ILE5_ARATH,A0A1P8AVE3_ARATH,F4IKK4_ARATH,A0A178V9Y2_ARATH,A0A1P8AVA6_ARATH Serine carboxypeptidase-like 3 (EC 3.4.16.-),Serine carboxypeptidase-like 8 (Protein SINAPOYLGLUCOSE ACCUMULATOR 1) (Sinapoylglucose--malate O-sinapoyltransferase) (SMT) (EC 2.3.1.92) (Sinapoylglucose--sinapoylglucose O-sinapoyltransferase) (EC 2.3.1.103),Serine carboxypeptidase-like 10 (Sinapoylglucose--anthocyanin acyltransferase) (Sinapoylglucose--anthocyanin sinapoyltransferase) (SAT) (EC 2.3.1.-),Serine carboxypeptidase-like 12 (EC 3.4.16.-),Serine carboxypeptidase-like 13 (Sinapoylglucose--sinapoylglucose O-sinapoyltransferase) (EC 2.3.1.103) (Sinapoylglucose--sinapoylglucose acyltransferase),Serine carboxypeptidase-like 2 (EC 3.4.16.-),Serine carboxypeptidase-like 4 (EC 3.4.16.-),Serine carboxypeptidase-like 16 (EC 3.4.16.-),Serine carboxypeptidase-like 5 (EC 3.4.16.-),Serine carboxypeptidase-like 11 (EC 3.4.16.-),Serine carboxypeptidase-like 1 (EC 3.4.16.-),Serine carboxypeptidase-like 6 (EC 3.4.16.-),Serine carboxypeptidase-like 9 (Sinapoylglucose--sinapoylglucose O-sinapoyltransferase) (SST) (EC 2.3.1.103) (Sinapoylglucose--sinapoylglucose acyltransferase),Serine carboxypeptidase-like 1,Serine carboxypeptidase-like 3,Serine carboxypeptidase-like 13,Serine carboxypeptidase-like 12,Serine carboxypeptidase-like 11,Serine carboxypeptidase-like 5,Sinapoylglucose 1,Serine carboxypeptidase-like 7,Serine carboxypeptidase-like 9,Serine carboxypeptidase-like 4 DISRUPTION PHENOTYPE: Plants do not contain sinapoylmalate and accumulate its biosynthetic precursor, sinapoylglucose. {ECO:0000269|PubMed:10948250}.,DISRUPTION PHENOTYPE: Lack of sinapoylated anthocyanins. {ECO:0000269|PubMed:17600138}.,DISRUPTION PHENOTYPE: Decreased levels of 1,2-disinapoyl-glucose due to a partial redundancy with SCPL8 and SCPL13. {ECO:0000269|PubMed:17600138}. Low sinapoylmalate and elevated sinapoylglucose levels-C. Chapple-2000 FUNCTION: Probable carboxypeptidase. {ECO:0000250}.,FUNCTION: Involved in plants secondary metabolism. Functions as acyltransferase to form the sinapate ester sinapoylmalate. Also capable of catalyzing the formation of 1,2-bis-O-sinapoyl beta-D-glucoside. {ECO:0000269|PubMed:10948250, ECO:0000269|PubMed:17094968, ECO:0000269|PubMed:17600138, ECO:0000269|PubMed:19695650, ECO:0000269|PubMed:19969522}.,FUNCTION: Involved in the biosynthesis of sinapoylated anthocyanins. {ECO:0000269|PubMed:17600138, ECO:0000269|PubMed:19969522}.,FUNCTION: Catalyzes the formation of 1,2-bis-O-sinapoyl beta-D-glucoside. {ECO:0000269|PubMed:17600138}.,FUNCTION: Catalyzes the formation of 1,2-bis-O-sinapoyl beta-D-glucoside and an unidentified compound 1. {ECO:0000269|PubMed:17600138}. MISCELLANEOUS: In cv. Pna-10, this protein SCP8 and the adjacent SCP10 are not present due to a natural 13-kb deletion (PubMed:19969522). {ECO:0000305|PubMed:19969522}.,MISCELLANEOUS: In cv. Pna-10, this protein SCP10 and the adjacent SCP8 are not present due to a natural 13-kb deletion (PubMed:19969522). {ECO:0000305|PubMed:19969522}. ARA:AT1G73280-MONOMER;,ARA:AT2G22990-MONOMER;,ARA:AT2G23000-MONOMER;MetaCyc:AT2G23000-MONOMER;,ARA:AT2G22920-MONOMER;,ARA:AT2G22980-MONOMER;MetaCyc:AT2G22980-MONOMER;,ARA:AT1G73300-MONOMER;,ARA:AT1G73310-MONOMER;,ARA:AT3G12220-MONOMER;,ARA:AT1G73290-MONOMER;,ARA:AT2G22970-MONOMER;,ARA:AT5G36180-MONOMER;,ARA:AT1G73270-MONOMER;,ARA:AT2G23010-MONOMER;ARA:GQT-492-MONOMER;MetaCyc:AT2G23010-MONOMER; R-ATH-6798695; 2.3.1.92; 3.4.16.-,2.3.1.92; 2.3.1.103,2.3.1.-,2.3.1.103 50279,49439,49785,49705,49150,50265,50352,49237,49938,49233,49986,51727,49756,36803,42995,33956,38727,35695,46934,45729,34334,48437,29912,50383,36801,42570,47584,49322,40233,49800,49257,36757,47107,37989 Serine carboxypeptidase-like 3 (EC 3.4.16.-),Serine carboxypeptidase-like 8 (Protein SINAPOYLGLUCOSE ACCUMULATOR 1) (Sinapoylglucose--malate O-sinapoyltransferase) (SMT) (EC 2.3.1.92) (Sinapoylglucose--sinapoylglucose O-sinapoyltransferase) (EC 2.3.1.103),Serine carboxypeptidase-like 10 (Sinapoylglucose--anthocyanin acyltransferase) (Sinapoylglucose--anthocyanin sinapoyltransferase) (SAT) (EC 2.3.1.-),Serine carboxypeptidase-like 12 (EC 3.4.16.-),Serine carboxypeptidase-like 13 (Sinapoylglucose--sinapoylglucose O-sinapoyltransferase) (EC 2.3.1.103) (Sinapoylglucose--sinapoylglucose acyltransferase),Serine carboxypeptidase-like 2 (EC 3.4.16.-),Serine carboxypeptidase-like 4 (EC 3.4.16.-),Serine carboxypeptidase-like 16 (EC 3.4.16.-),Serine carboxypeptidase-like 5 (EC 3.4.16.-),Serine carboxypeptidase-like 11 (EC 3.4.16.-),Serine carboxypeptidase-like 1 (EC 3.4.16.-),Serine carboxypeptidase-like 6 (EC 3.4.16.-),Serine carboxypeptidase-like 9 (Sinapoylglucose--sinapoylglucose O-sinapoyltransferase) (SST) (EC 2.3.1.103) (Sinapoylglucose--sinapoylglucose acyltransferase),Serine carboxypeptidase-like 1,Serine carboxypeptidase-like 3,Serine carboxypeptidase-like 13,Serine carboxypeptidase-like 12,Serine carboxypeptidase-like 11,Serine carboxypeptidase-like 5,Sinapoylglucose 1,Serine carboxypeptidase-like 7,Serine carboxypeptidase-like 9,Serine carboxypeptidase-like 4 extracellular region [GO:0005576]; carboxypeptidase activity [GO:0004180]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; secondary metabolic process [GO:0019748],vacuole [GO:0005773]; sinapoylglucose-malate O-sinapoyltransferase activity [GO:0016754]; sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity [GO:0047158]; phenylpropanoid metabolic process [GO:0009698]; proteolysis [GO:0006508],extracellular region [GO:0005576]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; proteolysis [GO:0006508]; secondary metabolic process [GO:0019748],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; carboxypeptidase activity [GO:0004180]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; secondary metabolic process [GO:0019748],extracellular region [GO:0005576]; sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity [GO:0047158]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; proteolysis [GO:0006508]; secondary metabolic process [GO:0019748],serine-type carboxypeptidase activity [GO:0004185],plant-type cell wall [GO:0009505]; serine-type carboxypeptidase activity [GO:0004185],integral component of membrane [GO:0016021]; serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Highly expressed in seedlings. Expressed in leaves, stems, flowers and siliques, and at low levels in roots. {ECO:0000269|PubMed:10948250, ECO:0000269|PubMed:12012238, ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in senescent leaves. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expression not detected. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in seedlings and roots. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in seedlings, roots and leaves. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, and siliques. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers and siliques. {ECO:0000269|PubMed:15908604}. locus:2197304;,locus:2045374;,locus:2045384;,locus:2059175;,locus:2197294;,locus:2197259;,locus:2082239;,locus:2197299;,locus:2158946;,locus:2197309;,locus:2045354;,locus:2045364;,locus:2045389; AT1G73280,AT2G22990,AT2G23000,AT2G22920,AT2G22980,AT1G73300,AT1G73310,AT3G12220,AT1G73290,AT2G22970,AT5G36180,AT1G73270,AT2G23010 Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411EDIF Q9M8T0 Y3288_ARATH Probable inactive receptor kinase At3g02880 67752 Probable inactive receptor kinase At3g02880 anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; response to abscisic acid [GO:0009737] locus:2075502; AT3G02880 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EDIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubisco LSMT substrate-binding NA NA NA NA NA NA NA ENOG411EDIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA inorganic phosphate NA NA NA NA NA NA NA ENOG411EDIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411EDIM Q9LSI1,A0A1I9LSB7 Q9LSI1_ARATH,A0A1I9LSB7_ARATH NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (NAM (No apical meristem) protein-like),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 31946,25619 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (NAM (No apical meristem) protein-like),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:1009023241; AT3G12977 dna binding NA NA NA NA NA NA NA ENOG411EDIN Q9SCT6 Y3172_ARATH WEB family protein At3g51720 45954 WEB family protein At3g51720 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2098247; AT3G51720 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411EDIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDII XTH14 Q9ZSU4 XTH14_ARATH Xyloglucan endotransglucosylase/hydrolase protein 14 (At-XTH14) (XTH-14) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Has some preference for non-fucosylated xyloglucan polymer. No apparent XEH activity in vitro. {ECO:0000269|PubMed:10406121}. ARA:AT4G25820-MONOMER; 2.4.1.207; 2.4.1.207 32740 Xyloglucan endotransglucosylase/hydrolase protein 14 (At-XTH14) (XTH-14) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Root specific. {ECO:0000269|PubMed:11673616}. locus:2117492; AT4G25820 Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411EDIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os06g0119100 protein,Os06g0119100 protein (Fragment),Os06g0116966 protein Q5VPR2,A0A0N7KLF5,A0A0P0WS78 Q5VPR2_ORYSJ,A0A0N7KLF5_ORYSJ,A0A0P0WS78_ORYSJ Os06g0119100 Os06g0119100 OsJ_19920 OSJNBa0062J13.35 OSNPB_060119100 P0660D08.4,Os06g0119100 OSNPB_060119100,Os06g0116966 OSNPB_060116966 ENOG411EDIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os08g0488800 protein Q6ZBR2,A0A0N7KQ21 Q6ZBR2_ORYSJ,A0A0N7KQ21_ORYSJ Os08g0489100 OSNPB_080489100 P0028A08.33 P0605H02.10,Os08g0488800 OSNPB_080488800 ENOG411EDI4 Q9LHB3,A0A1I9LSR6 Q9LHB3_ARATH,A0A1I9LSR6_ARATH Uncharacterized protein 65410,57592 Uncharacterized protein locus:2101242; AT3G12540 Protein of unknown function DUF547 NA NA NA NA NA NA NA ENOG411EDI5 MXC9.5 Q9SIN4,Q9FMQ2,Q3E909 Q9SIN4_ARATH,Q9FMQ2_ARATH,Q3E909_ARATH Protein kinase superfamily protein (Uncharacterized protein At2g42550),Protein kinase superfamily protein (Similarity to NPK1-related protein kinase),Protein kinase superfamily protein 38773,42343,34521 Protein kinase superfamily protein (Uncharacterized protein At2g42550),Protein kinase superfamily protein (Similarity to NPK1-related protein kinase),Protein kinase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2041494;,locus:2177018;,locus:2146340; AT2G42550,AT5G12090,AT5G27510 STYKc NA NA NA NA NA NA NA ENOG411EDI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Methyltransferase NA NA NA NA NA NA NA ENOG411EDI7 XLG2 C6KIE6,A0A1P8B6B8 XLG2_ARATH,A0A1P8B6B8_ARATH Extra-large guanine nucleotide-binding protein 2 (Extra-large GTP-binding protein 2) (Extra-large G-protein 2),Extra-large GTP-binding protein 2 DISRUPTION PHENOTYPE: No visible phenotype. Enhanced susceptibility to P.syringae. {ECO:0000269|PubMed:17999646, ECO:0000269|PubMed:19825634}. Susceptible to bacterial infection-Y. Xia-2009 FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems (By similarity). Binds GTP with specificity. Plays a role in the root morphogenesis by regulation of the cell proliferation. Acts as a positive regulator in resistance to pathogen that triggers the salicylic acid (SA) pathway. Promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo leading to the activation of floral integrator genes. {ECO:0000250, ECO:0000269|PubMed:17999646, ECO:0000269|PubMed:19825634, ECO:0000269|PubMed:22232549}. MISCELLANEOUS: Dark-grown xlg1-1 xlg2-1 xlg3-1 triple mutant plants showed markedly increased primary root length compared with wild-type plants. Dark-grown roots of the xlg triple mutants also showed altered sensitivity to sugars, abscisic acid (ABA) hyposensitivity and ethylene hypersensitivity, whereas seed germination in xlg triple mutants was hypersensitive to osmotic stress and ABA (PubMed:17999646). {ECO:0000305|PubMed:17999646}. R-ATH-112043;R-ATH-202040;R-ATH-2514859;R-ATH-399997;R-ATH-416476;R-ATH-416482;R-ATH-418555;R-ATH-434316; 97183,92777 Extra-large guanine nucleotide-binding protein 2 (Extra-large GTP-binding protein 2) (Extra-large G-protein 2),Extra-large GTP-binding protein 2 heterotrimeric G-protein complex [GO:0005834]; nucleus [GO:0005634]; G-protein beta/gamma-subunit complex binding [GO:0031683]; G-protein coupled receptor binding [GO:0001664]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; signal transducer activity [GO:0004871]; adenylate cyclase-modulating G-protein coupled receptor signaling pathway [GO:0007188]; defense response to bacterium [GO:0042742]; response to bacterium [GO:0009617],G-protein beta/gamma-subunit complex binding [GO:0031683]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; signal transducer activity [GO:0004871]; G-protein coupled receptor signaling pathway [GO:0007186] TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in vascular tissues, root and shoot meristems and lateral root primordia. {ECO:0000269|PubMed:17999646}. locus:2116204; AT4G34390 extra-large GTP-binding protein 2 NA NA NA NA NA NA NA ENOG411EDI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os11g0270500 protein) Q0ITC8 Q0ITC8_ORYSJ Os11g0270500 LOC_Os11g17014 Os11g0270500 OSNPB_110270500 ENOG411EDI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M1 NA NA NA NA NA NA NA ENOG411EDI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA NA NA NA NA NA NA NA ENOG411EDI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain NA NA NA NA NA NA NA ENOG411EDI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase NA NA NA NA NA NA NA ENOG411DXVF MWF20.9,MWF20.8 Q94AE4,Q9LSX2,Q1PEM2,Q9LYV5 Q94AE4_ARATH,Q9LSX2_ARATH,Q1PEM2_ARATH,Q9LYV5_ARATH AT5g43400/MWF20_9 (Emb|CAB86628.1) (Plant/protein),Emb|CAB86628.1 (Plant/protein),Uncharacterized conserved protein UCP015417, vWA,AT5g13210/T31B5_30 (Uncharacterized conserved protein UCP015417, vWA) (Uncharacterized protein T31B5_30) 74644,73050,81388,76235 AT5g43400/MWF20_9 (Emb|CAB86628.1) (Plant/protein),Emb|CAB86628.1 (Plant/protein),Uncharacterized conserved protein UCP015417, vWA,AT5g13210/T31B5_30 (Uncharacterized conserved protein UCP015417, vWA) (Uncharacterized protein T31B5_30) locus:2176501;,locus:2176491;,locus:2087333;,locus:2183911; AT5G43400,AT5G43390,AT3G24780,AT5G13210 Domain of unknown function (DUF2828) Os02g0179600 protein,Os06g0652100 protein,Os12g0141800 protein,Os09g0499500 protein (Fragment) Q6ETK8,Q67UP5,A0A0P0Y6S2,A0A0P0XNX8 Q6ETK8_ORYSJ,Q67UP5_ORYSJ,A0A0P0Y6S2_ORYSJ,A0A0P0XNX8_ORYSJ Os02g0179600 OsJ_05619 OSNPB_020179600 P0544B02.26,Os06g0652100 OsJ_22188 OSJNBa0085J13.1 OSNPB_060652100 P0453H04.43,Os12g0141800 OSNPB_120141800,Os09g0499500 OSNPB_090499500 ENOG411DXVE UBP26 Q9SCJ9,A0A1I9LLU6 UBP26_ARATH,A0A1I9LLU6_ARATH Ubiquitin carboxyl-terminal hydrolase 26 (EC 3.4.19.12) (Deubiquitinating enzyme 26) (AtUBP26) (Ubiquitin thioesterase 26) (Ubiquitin-specific-processing protease 26),Ubiquitin-specific protease 26 In homozygous plants 20% of ovules fail to form seeds. Ovules that do not produce seeds do not produce embryo sacs. Among the remaining ovule that do form embryo sacs and embryos more than 50% of the embryos abort at various stages. With fewer seeds the siliques of homozygous plants are shorter. Later formed flowers have non-dehiscent anthers. 50% defective seeds; Low penetrance of endosperm development without fertilization; Reduced fertility; Shriveled seeds-A. Chaudhury-2008 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Deubiquitinates H2BK143ub1 of histone H2B. {ECO:0000269|PubMed:17554311}. ARA:AT3G49600-MONOMER; 3.4.19.12 119934,117566 Ubiquitin carboxyl-terminal hydrolase 26 (EC 3.4.19.12) (Deubiquitinating enzyme 26) (AtUBP26) (Ubiquitin thioesterase 26) (Ubiquitin-specific-processing protease 26),Ubiquitin-specific protease 26 nucleolus [GO:0005730]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; seed development [GO:0048316]; ubiquitin-dependent protein catabolic process [GO:0006511],thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves and inflorescences. {ECO:0000269|PubMed:17554311}. locus:2114653; AT3G49600 ubiquitin carboxyl-terminal hydrolase Ubiquitin carboxyl-terminal hydrolase 26 (EC 3.4.19.12) (Deubiquitinating enzyme 26) (Ubiquitin thioesterase 26) (Ubiquitin-specific-processing protease 26),Os03g0192800 protein A3AF13,A0A0N7KGR3 UBP26_ORYSJ,A0A0N7KGR3_ORYSJ UBP26 Os03g0192800 LOC_Os03g09260 OsJ_009385,Os03g0192800 OSNPB_030192800 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Deubiquitinates H2BK143ub1 of histone H2B (By similarity). {ECO:0000250}. ENOG411DXVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os08g0225400 protein (Fragment) A0A0P0XDA1 A0A0P0XDA1_ORYSJ Os08g0225400 OSNPB_080225400 ENOG411DXVC HEME1 Q93ZB6 DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic (UPD1) (URO-D1) (EC 4.1.1.37) FUNCTION: Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. {ECO:0000250}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT3G14930-MONOMER; R-ATH-189451; 4.1.1.37 46254 Uroporphyrinogen decarboxylase 1, chloroplastic (UPD1) (URO-D1) (EC 4.1.1.37) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; uroporphyrinogen decarboxylase activity [GO:0004853]; chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782]; response to cadmium ion [GO:0046686] locus:2086300; AT3G14930 Uroporphyrinogen decarboxylase Uroporphyrinogen decarboxylase 1, chloroplastic (UPD1) (URO-D1) (EC 4.1.1.37) Q9AXB0 DCUP1_ORYSJ Os01g0622300 LOC_Os01g43390 OsJ_02650 P0501G01.7 FUNCTION: Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. {ECO:0000250}. ENOG411DXVA F11F8_28 Q9LYY8,Q9SF34 Q9LYY8_ARATH,Q9SF34_ARATH Alpha/beta-Hydrolases superfamily protein (At5g02970/F9G14_280) (Uncharacterized protein F9G14_280),Alpha/beta-Hydrolases superfamily protein (At3g09690) (Uncharacterized protein At3g09690) (Uncharacterized protein F11F8_28) 58351,59538 Alpha/beta-Hydrolases superfamily protein (At5g02970/F9G14_280) (Uncharacterized protein F9G14_280),Alpha/beta-Hydrolases superfamily protein (At3g09690) (Uncharacterized protein At3g09690) (Uncharacterized protein F11F8_28) hydrolase activity [GO:0016787] locus:2151311;,locus:2074964; AT5G02970,AT3G09690 hydrolase alpha beta fold family protein Hydrolase, alpha/beta fold family protein, expressed (Os03g0288300 protein) (cDNA clone:J023084A05, full insert sequence),Os12g0535400 protein (Fragment),Os03g0288300 protein,Os07g0289600 protein (Fragment) Q10N00,Q0IMW2,A0A0N7KH27,A0A0N7KN99 Q10N00_ORYSJ,Q0IMW2_ORYSJ,A0A0N7KH27_ORYSJ,A0A0N7KN99_ORYSJ Os03g0288300 LOC_Os03g17900 Os03g0288300 OSNPB_030288300,Os12g0535400 Os12g0535400 OSNPB_120535400,Os03g0288300 OSNPB_030288300,Os07g0289600 OSNPB_070289600 ENOG411DXVM A0A1P8B5Q3,Q9SUP1,F4JUV5,A0A1P8B5R1,Q94F42 A0A1P8B5Q3_ARATH,Q9SUP1_ARATH,F4JUV5_ARATH,A0A1P8B5R1_ARATH,Q94F42_ARATH Oxidoreductase,Oxidoreductase (Uncharacterized protein AT4g20350) (Uncharacterized protein F9F13.6),AT4g20350/F9F13_6 (Oxidoreductase) 24492,27307,21023,21027,15658 Oxidoreductase,Oxidoreductase (Uncharacterized protein AT4g20350) (Uncharacterized protein F9F13.6),AT4g20350/F9F13_6 (Oxidoreductase) oxidoreductase activity [GO:0016491],dioxygenase activity [GO:0051213]; ferrous iron binding [GO:0008198] locus:2128600; AT4G20350 Inherit from KOG: AlkB alkylation repair homolog 6 (E. coli) Os10g0420000 protein Q0IXN0 Q0IXN0_ORYSJ Os10g0420000 OSNPB_100420000 ENOG411DXVI RH7 Q39189 RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.4.13) R-ATH-6791226; 3.6.4.13 72891 DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; DEAD/H-box RNA helicase binding [GO:0017151]; RNA binding [GO:0003723]; RNA metabolic process [GO:0016070]; RNA secondary structure unwinding [GO:0010501] locus:2167903; AT5G62190 RNA helicase DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.4.13),Os09g0520700 protein (Fragment) Q650T9,A0A0P0XPY8 RH7_ORYSJ,A0A0P0XPY8_ORYSJ Os09g0520700 LOC_Os09g34910 P0669G04.13,Os09g0520700 OSNPB_090520700 ENOG411DXVW MED4 Q9LZ00 MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. 46156 Mediator of RNA polymerase II transcription subunit 4 core mediator complex [GO:0070847]; mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] locus:2151266; AT5G02850 Hydroxyproline-rich glycoprotein family protein Mediator of RNA polymerase II transcription subunit 4 (Mediator complex subunit 4) Q651E1 Q651E1_ORYSJ MED4 Os09g0540500 B1274F11.20 OsJ_30176 OSNPB_090540500 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364141}. ENOG411DXVQ TUBG2,TUBG1 P38558,P38557 TBG2_ARATH,TBG1_ARATH Tubulin gamma-2 chain (Gamma-2-tubulin),Tubulin gamma-1 chain (Gamma-1-tubulin) DISRUPTION PHENOTYPE: Alteration of the morphology of feeding site and failure of nematode life cycle completion. {ECO:0000269|PubMed:22144887}. Lethal upon germination seedlings never recovered.,No visible phenotype.,Reduced seed set a large percentage of defective female gametophyte observed during 8-nucleate stage. Male gametophyte was also affected mostly at binuclear stage of pollen development. Mutant pollen grains were viable.,During early seedling growth cotyledons were small and distorted and only two leaf primordia were inittaited at the shoot apex. Dome-shape soot apical meristem was distorted. Root growth was inhibited and root apex was swollen.,Lethal with severe gametophytic effects. FUNCTION: Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome, suggesting that it is involved in the minus-end nucleation of microtubule assembly. {ECO:0000269|PubMed:22144887}.; FUNCTION: Gamma-tubulin complex is essential for the control of microtubular network remodeling in the course of initiation and development of giant-feeding cells, and for the successful reproduction of nematodes (e.g. Meloidogyne spp.) in their plant hosts. {ECO:0000269|PubMed:22144887}. 53277,53246 Tubulin gamma-2 chain (Gamma-2-tubulin),Tubulin gamma-1 chain (Gamma-1-tubulin) cell cortex [GO:0005938]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; gamma-tubulin complex [GO:0000930]; microtubule [GO:0005874]; mitochondrion [GO:0005739]; nuclear envelope [GO:0005635]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cellular localization [GO:0051641]; cytokinesis by cell plate formation [GO:0000911]; cytoplasmic microtubule organization [GO:0031122]; leaf development [GO:0048366]; microtubule nucleation [GO:0007020]; response to nematode [GO:0009624]; root hair cell tip growth [GO:0048768]; stomatal complex morphogenesis [GO:0010103],cell cortex [GO:0005938]; cytoplasm [GO:0005737]; gamma-tubulin complex [GO:0000930]; microtubule [GO:0005874]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cellular localization [GO:0051641]; cytokinesis by cell plate formation [GO:0000911]; cytoplasmic microtubule organization [GO:0031122]; leaf development [GO:0048366]; microtubule nucleation [GO:0007020]; response to nematode [GO:0009624]; root hair cell tip growth [GO:0048768]; stomatal complex morphogenesis [GO:0010103] locus:2166469;,locus:2076750; AT5G05620,AT3G61650 Tubulin is the major constituent of microtubules. Gamma tubulin is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (By similarity) Tubulin gamma-2 chain (Gamma-2-tubulin) O49068 TBG2_ORYSJ TUBG2 TUBC Os05g0156600 LOC_Os05g06450 P0431G05.16 P0676G05.6 FUNCTION: Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome, suggesting that it is involved in the minus-end nucleation of microtubule assembly. ENOG411DRKA AT1G29200.2 F4HZX7,Q5BPY9,B3H6X4 F4HZX7_ARATH,Q5BPY9_ARATH,B3H6X4_ARATH O-fucosyltransferase family protein 69119,55978,47761 O-fucosyltransferase family protein integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],transferase activity, transferring glycosyl groups [GO:0016757] locus:2029984; AT1G29200 DUF246 domain-containing protein At1g04910-like Os06g0545900 protein (Putative axi 1) (cDNA clone:J023045H18, full insert sequence) Q5Z5W7 Q5Z5W7_ORYSJ Os06g0545900 OJ1212_H09.28 OsJ_21623 OSJNBa0016D02.6 OSNPB_060545900 ENOG411DXVY CYP710A2,CYP710A3,CYP710A4,CYP710A1 O64698,Q9ZV29,Q9ZV28,O64697 C7102_ARATH,C7103_ARATH,C7104_ARATH,C7101_ARATH Cytochrome P450 710A2 (EC 1.14.19.41) (C-22 sterol desaturase),Cytochrome P450 710A3 (EC 1.14.19.41) (C-22 sterol desaturase),Cytochrome P450 710A4 (EC 1.14.19.41) (C-22 sterol desaturase),Cytochrome P450 710A1 (EC 1.14.19.41) (C-22 sterol desaturase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but production of brassicasterol is abolished. {ECO:0000269|PubMed:16531502}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but upon infection with P.syringae, no accumulation of stigmasterol and increased resistance to the pathogen. {ECO:0000269|PubMed:20444228}. Brassicasterol/crinosterol production activity is almost completely abolished. Stigmasterol content however was the same as that of wildtype.,Does not contain any 24-methyl-Δ22-sterols.,No visible phenotype. Low sterol levels-D. Ohta-2006 FUNCTION: Required to form the C-22 double bond in the sterol side chain. Possesses in vitro C-22 desaturase activity toward 24-epi-campesterol and beta-sitosterol and produces brassicasterol and stigmasterol, respectively. No activity with campesterol. {ECO:0000269|PubMed:16531502}.,FUNCTION: Required to form the C-22 double bond in the sterol side chain. Possesses in vitro C-22 desaturase activity toward beta-sitosterol and produces stigmasterol. {ECO:0000250|UniProtKB:O64697}.,FUNCTION: Required to form the C-22 double bond in the sterol side chain. Possesses C-22 desaturase activity toward beta-sitosterol and produces stigmasterol. {ECO:0000269|PubMed:17909855}.,FUNCTION: Required to form the C-22 double bond in the sterol side chain. Possesses in vitro C-22 desaturase activity toward beta-sitosterol and produces stigmasterol. No activity with campesterol. {ECO:0000269|PubMed:16531502, ECO:0000269|PubMed:17909855, ECO:0000269|PubMed:20444228}. MISCELLANEOUS: Plants overexpressing CYP710A2 show higher levels of brassicasterol/crinosterol and stigmasterol, and lower levels of 24-epi-campesterol/campesterol and beta-sitosterol than the wild-type. {ECO:0000269|PubMed:16531502}.,MISCELLANEOUS: Plants overexpressing CYP710A4 show higher levels of stigmasterol and lower levels of beta-sitosterol than the wild-type. {ECO:0000269|PubMed:16531502}.,MISCELLANEOUS: Plants overexpressing CYP710A1 show higher levels of stigmasterol and lower levels of beta-sitosterol than the wild-type. {ECO:0000269|PubMed:16531502}. PATHWAY: Steroid biosynthesis; sterol biosynthesis. {ECO:0000269|PubMed:16531502}. ARA:AT2G34490-MONOMER;MetaCyc:AT2G34490-MONOMER;,ARA:GQT-296-MONOMER;,ARA:GQT-321-MONOMER;,ARA:AT2G34500-MONOMER;MetaCyc:AT2G34500-MONOMER; 1.14.19.41 56346,55874,55690,55724 Cytochrome P450 710A2 (EC 1.14.19.41) (C-22 sterol desaturase),Cytochrome P450 710A3 (EC 1.14.19.41) (C-22 sterol desaturase),Cytochrome P450 710A4 (EC 1.14.19.41) (C-22 sterol desaturase),Cytochrome P450 710A1 (EC 1.14.19.41) (C-22 sterol desaturase) integral component of membrane [GO:0016021]; C-22 sterol desaturase activity [GO:0000249]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; sterol biosynthetic process [GO:0016126] TISSUE SPECIFICITY: Expressed in the vascular tissues of roots, shoots, stems and leaves. Expressed in root tips, carpes, siliques and seeds. {ECO:0000269|PubMed:16531502}.,TISSUE SPECIFICITY: Expressed in stems. Detected in primary root caps and immature petals. {ECO:0000269|PubMed:16531502}.,TISSUE SPECIFICITY: Very weak expression in roots and root hairs. Not detected in the root tips. {ECO:0000269|PubMed:16531502}.,TISSUE SPECIFICITY: Expressed in the vascular tissues of roots, shoots and leaves. Expressed in root tips and sepals. Very low expression in stems and siliques. {ECO:0000269|PubMed:16531502}. locus:2040929;,locus:2053220;,locus:2053235;,locus:2040939; AT2G34490,AT2G28850,AT2G28860,AT2G34500 cytochrome P450 Os01g0210900 protein (Sterol C-22 desaturase-like) (cDNA clone:J023078H20, full insert sequence),Os01g0211200 protein (Putative sterol C-22 desaturase),Os01g0211600 protein (Fragment),Os01g0211000 protein Q9LE72,Q9LDF0,Q0JPP0,A0A0P0UZQ2 Q9LE72_ORYSJ,Q9LDF0_ORYSJ,Q0JPP0_ORYSJ,A0A0P0UZQ2_ORYSJ Os01g0210900 OsJ_00848 OSNPB_010210900 P0031E09.18 P0466B10.28,Os01g0211200 OsJ_00850 OSNPB_010211200 P0031E09.22 P0466B10.32,Os01g0211600 Os01g0211600 OSNPB_010211600,Os01g0211000 OSNPB_010211000 ENOG411DRKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fungal trichothecene efflux pump (TRI12) NA NA NA NA NA NA NA ENOG411DRKR T22E16.80 Q9M2T7 Q9M2T7_ARATH Uncharacterized protein At3g55420 (Uncharacterized protein T22E16.80) 24146 Uncharacterized protein At3g55420 (Uncharacterized protein T22E16.80) locus:2099996; AT3G55420 NA Os05g0459300 protein (cDNA clone:001-101-B09, full insert sequence) (cDNA clone:002-117-E11, full insert sequence) B7E7C1 B7E7C1_ORYSJ Os05g0459300 OsJ_18805 OSNPB_050459300 ENOG411DRKQ F4I116 SYLC_ARATH Leucine--tRNA ligase, cytoplasmic (EC 6.1.1.4) (Leucyl-tRNA synthetase) (LeuRS) FUNCTION: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a two step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:Q9P2J5}. 6.1.1.4 123451 Leucine--tRNA ligase, cytoplasmic (EC 6.1.1.4) (Leucyl-tRNA synthetase) (LeuRS) chloroplast [GO:0009507]; cytosol [GO:0005829]; plasmodesma [GO:0009506]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; leucine-tRNA ligase activity [GO:0004823]; valine-tRNA ligase activity [GO:0004832]; leucyl-tRNA aminoacylation [GO:0006429]; valyl-tRNA aminoacylation [GO:0006438] locus:2012240; AT1G09620 Leucyl-tRNA synthetase Os09g0378300 protein (Putative leucyl-tRNA synthetase) (cDNA clone:J013169D12, full insert sequence),Os09g0503400 protein,Os05g0241100 protein,Os09g0503400 protein (Fragment) Q6H4P7,Q0J0N6,Q60EV0,A0A0P0XNS9 Q6H4P7_ORYSJ,Q0J0N6_ORYSJ,Q60EV0_ORYSJ,A0A0P0XNS9_ORYSJ Os09g0378300 OsJ_29173 OSJNBa0041C07.40 OSNPB_090378300,Os09g0503400 OSNPB_090503400,Os05g0241100 OJ1115_B04.9 OSNPB_050241100 ENOG411DRKP F4JFU8 F4JFU8_ARATH Alpha/beta-Hydrolases superfamily protein 59607 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2091025; AT3G14360 Lipase (class 3) Lipase class 3-like (Os06g0210900 protein) Q69TX0 Q69TX0_ORYSJ Os06g0210900 OSNPB_060210900 P0021C04.18 ENOG411DXV6 RNE,rne F4IV66,Q8GVF1 RNE_ARATH,Q8GVF1_ARATH Ribonuclease E/G-like protein, chloroplastic (RNase E/G-like protein) (EC 3.1.26.-) (RNase E),Putative endoribonuclease E (RNAse E/G-like protein) DISRUPTION PHENOTYPE: Reduced photosynthetic activity and retarded growth. Increased number and decreased size of chloroplasts. Loss of autotrophic growth. Pale cotyledons when grown on sucrose-complemented medium. {ECO:0000269|PubMed:18515828, ECO:0000269|PubMed:21105931, ECO:0000269|PubMed:22735703}. Segregates 3:1 WT:hoomozygous mutant. Homozygotes are white and arrest after the cotyledon stage. The phenotype is rescued by growth on sucrose.,White seedlings that arrest at the cotyledon stage. Phenotype rescued by providing sucrose. On sucrose mutant plants have small chloroplasts with fewer thylakoids and shorter granal stacks than WT. Fully developed chloroplasts are not observed. Seedling lethal without exogenous sucrose; Pale green-A. Day-2008 FUNCTION: Involved in intercistronic processing of primary transcripts from chloroplast operons. The endonucleolytic activity of the enzyme depends on the number of phosphates at the 5' end, is inhibited by structured RNA, and preferentially cleaves A/U-rich sequences. {ECO:0000269|PubMed:18441049, ECO:0000269|PubMed:18515828, ECO:0000269|PubMed:21105931}. 3.1.26.- 111552,90845 Ribonuclease E/G-like protein, chloroplastic (RNase E/G-like protein) (EC 3.1.26.-) (RNase E),Putative endoribonuclease E (RNAse E/G-like protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; endoribonuclease activity [GO:0004521]; RNA binding [GO:0003723]; starch binding [GO:2001070]; chloroplast mRNA processing [GO:0010239]; chloroplast organization [GO:0009658]; chloroplast rRNA processing [GO:1901259],ribonuclease activity [GO:0004540]; RNA binding [GO:0003723]; RNA processing [GO:0006396] TISSUE SPECIFICITY: Expressed in cotyledons, rosette and cauline leaves. {ECO:0000269|PubMed:18515828}. locus:2059775; AT2G04270 Ribonuclease E/G family Os08g0323600 protein (Putative endoribonuclease E),Os08g0323600 protein (Fragment) Q69PQ8,Q6Z0E3,A0A0P0XER9 Q69PQ8_ORYSJ,Q6Z0E3_ORYSJ,A0A0P0XER9_ORYSJ OSJNBa0078D03.16-2 Os08g0323600 OSNPB_080323600,Os08g0323600 OsJ_26881 OSJNBa0078D03.16-1 OSNPB_080323600,Os08g0323600 OSNPB_080323600 ENOG411EMCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B561 Os01g0895300 protein (Fragment) A0A0N7KE83 A0A0N7KE83_ORYSJ Os01g0895300 OSNPB_010895300 ENOG411E72B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Protein YY1 O23810 YY1_ORYSJ Os09g0525500 LOC_Os09g35700 OJ1439_F07.3 OSJNBa0047P18.31 ENOG411E72G F4I1M5 F4I1M5_ARATH Transmembrane protein 9848 Transmembrane protein integral component of membrane [GO:0016021] locus:2035952; AT1G36380 NA Os02g0552400 protein A0A0P0VKD1 A0A0P0VKD1_ORYSJ Os02g0552400 OSNPB_020552400 ENOG411E72D Q9ZU01 Q9ZU01_ARATH Cotton fiber protein (Uncharacterized protein AT4g02160) (Uncharacterized protein T10M13.23) 20742 Cotton fiber protein (Uncharacterized protein AT4g02160) (Uncharacterized protein T10M13.23) locus:2132143; AT4G02160 NA NA NA NA NA NA NA NA ENOG411E72E MUD21.2 Q9FL02,A0A1P8BBD9 Q9FL02_ARATH,A0A1P8BBD9_ARATH AT5g66780/MUD21_2 (Late embryogenesis abundant protein),Late embryogenesis abundant protein 13451,11158 AT5g66780/MUD21_2 (Late embryogenesis abundant protein),Late embryogenesis abundant protein locus:2174984; AT5G66780 NA NA NA NA NA NA NA NA ENOG411E72J Q8LEU9 Q8LEU9_ARATH At5g14105 (Uncharacterized protein At5g14105) 8438 At5g14105 (Uncharacterized protein At5g14105) mitochondrial respiratory chain complex I [GO:0005747] locus:505006617; AT5G14105 NA NA NA NA NA NA NA NA ENOG411E72K Q9SY22 Q9SY22_ARATH At1g30800 (Fasciclin-like arabinogalactan family protein) (T17H7.8) 25648 At1g30800 (Fasciclin-like arabinogalactan family protein) (T17H7.8) anchored component of membrane [GO:0031225] locus:2196969; AT1G30800 FAS1 NA NA NA NA NA NA NA ENOG411E72I TIM13 Q9XH48 TIM13_ARATH Mitochondrial import inner membrane translocase subunit TIM13 FUNCTION: Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex mediates the import of some proteins while the predominant TIM9-TIM10 70 kDa complex mediates the import of much more proteins (By similarity). {ECO:0000250}. 9412 Mitochondrial import inner membrane translocase subunit TIM13 mitochondrial intermembrane space [GO:0005758]; mitochondrial intermembrane space protein transporter complex [GO:0042719]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; protein transporter activity [GO:0008565]; chaperone-mediated protein transport [GO:0072321]; protein import into mitochondrial inner membrane [GO:0045039] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2200918; AT1G61570 Mitochondrial import inner membrane translocase subunit Mitochondrial import inner membrane translocase subunit Tim13,OSJNBa0064M23.16 protein (Os04g0581300 protein),Os01g0932550 protein (Fragment) Q9XGY5,Q7XUM9,A0A0P0VCD9 TIM13_ORYSJ,Q7XUM9_ORYSJ,A0A0P0VCD9_ORYSJ TIM13 Os02g0682600 LOC_Os02g45820 OJ1123_G04.16 OsJ_07945,Os04g0581300 Os04g0581300 OsJ_15898 OSJNBa0064M23.16 OSNPB_040581300,Os01g0932550 OSNPB_010932550 FUNCTION: Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex mediates the import of some proteins while the predominant TIM9-TIM10 70 kDa complex mediates the import of much more proteins (By similarity). {ECO:0000250}. ENOG411E72N HIPP43 Q9SFF7,A0A1I9LQR7 HIP43_ARATH,A0A1I9LQR7_ARATH Heavy metal-associated isoprenylated plant protein 43 (AtHIP43),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 13435,11159 Heavy metal-associated isoprenylated plant protein 43 (AtHIP43),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2074474; AT3G05920 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E72M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant calmodulin-binding domain NA NA NA NA NA NA NA ENOG411E72R RPS29A; RPS29B; RPS29C Q680P8 RS29_ARATH 40S ribosomal protein S29 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 6429 40S ribosomal protein S29 cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; zinc ion binding [GO:0008270]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2097119;locus:2097154;locus:505006550; AT3G43980AT3G44010;AT4G33865; 40S ribosomal protein S29 40S ribosomal protein S29, putative, expressed (Os03g0773150 protein) (Os11g0634500 protein) (Os12g0508300 protein) (Putative ribosomal protein S29) Q7XZX4 Q7XZX4_ORYSJ Os11g0634500 LOC_Os11g41610 Os03g0773150 Os12g0508300 OsJ_34533 OSJNBb0094O03.12 OSNPB_030773150 OSNPB_110634500 OSNPB_120508300 ENOG411E72V Q8GWT6 Q8GWT6_ARATH At1g53885 (Linoleate 9S-lipoxygenase-4 protein, putative (DUF581)) (Uncharacterized protein At1g53885/T18A20.20) 14761 At1g53885 (Linoleate 9S-lipoxygenase-4 protein, putative (DUF581)) (Uncharacterized protein At1g53885/T18A20.20) locus:4515102678;locus:505006184; AT1G53885AT1G53903; Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E72W Q8L9Y4 Q8L9Y4_ARATH AT3G15395 protein (At3g15395) (HrpN-interacting protein from malus protein) 6413 AT3G15395 protein (At3g15395) (HrpN-interacting protein from malus protein) integral component of membrane [GO:0016021] locus:1006230233; AT3G15395 NA Os02g0197400 protein (cDNA, clone: J080306J10, full insert sequence) Q6H749 Q6H749_ORYSJ Os02g0197400 Os02g0197400 OJ1524_D08.26 OSNPB_020197400 P0026H03.1 ENOG411E72T F11P17.3 O22721,Q9SVT5,F4JJL6 O22721_ARATH,Q9SVT5_ARATH,F4JJL6_ARATH At1g61255 (F11P17.3 protein),AT4g21620/F17L22_80 (Glycine-rich protein) (Uncharacterized protein At4g21620) (Uncharacterized protein F17L22.80),Glycine-rich protein 15054,12859,10048 At1g61255 (F11P17.3 protein),AT4g21620/F17L22_80 (Glycine-rich protein) (Uncharacterized protein At4g21620) (Uncharacterized protein F17L22.80),Glycine-rich protein locus:504956325;,locus:2119003; AT1G61255,AT4G21620 glycine-rich protein Expressed protein (Os12g0634700 protein),Os07g0123900 protein (cDNA clone:J033031F04, full insert sequence),Expressed protein (Os03g0676300 protein) (cDNA clone:002-139-B03, full insert sequence) Q2QLN9,Q0D8V8,Q9FRF5 Q2QLN9_ORYSJ,Q0D8V8_ORYSJ,Q9FRF5_ORYSJ Os12g0634700 LOC_Os12g43820 OsJ_36986 OSNPB_120634700,Os07g0123900 Os07g0123900 OSNPB_070123900,Os03g47270 LOC_Os03g47270 Os03g0676300 OSNPB_030676300 ENOG411E72U CYS5 Q41916 CYT5_ARATH Cysteine proteinase inhibitor 5 (AtCYS-5) FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. 13372 Cysteine proteinase inhibitor 5 (AtCYS-5) cell wall [GO:0005618]; extracellular region [GO:0005576]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; protease binding [GO:0002020]; defense response [GO:0006952]; negative regulation of cysteine-type endopeptidase activity [GO:2000117] locus:2168973; AT5G47550 Cysteine proteinase inhibitor NA NA NA NA NA NA NA ENOG411E72Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA wound induced protein NA NA NA NA NA NA NA ENOG411E72X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBCc NA NA NA NA NA NA NA ENOG411E72Y T20K12.270 Q9M2C7,Q9ZQC1 Q9M2C7_ARATH,Q9ZQC1_ARATH At3g61370 (Pre-mRNA-splicing factor CWC22-like protein (DUF3245)) (Uncharacterized protein T20K12.270),Pre-mRNA-splicing factor CWC22-like protein, putative (DUF3245) (Uncharacterized protein AT4g07940) (Uncharacterized protein F1K3.1) 14038,15335 At3g61370 (Pre-mRNA-splicing factor CWC22-like protein (DUF3245)) (Uncharacterized protein T20K12.270),Pre-mRNA-splicing factor CWC22-like protein, putative (DUF3245) (Uncharacterized protein AT4g07940) (Uncharacterized protein F1K3.1) locus:2098951;,locus:2120517; AT3G61370,AT4G07940 Protein of unknown function (DUF3245) NA NA NA NA NA NA NA ENOG411E722 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0529900 protein A0A0P0WXD2 A0A0P0WXD2_ORYSJ Os06g0529900 OSNPB_060529900 ENOG411E720 Q9FMS3,F4K8H6,B3H5W3 Q9FMS3_ARATH,F4K8H6_ARATH,B3H5W3_ARATH At5g22280 (Emb|CAB88996.1) (Peptidyl-prolyl cis-trans isomerase G) (Uncharacterized protein At5g22280; MWD9.6),Peptidyl-prolyl cis-trans isomerase G 12784,15999,11968 At5g22280 (Emb|CAB88996.1) (Peptidyl-prolyl cis-trans isomerase G) (Uncharacterized protein At5g22280; MWD9.6),Peptidyl-prolyl cis-trans isomerase G isomerase activity [GO:0016853] locus:2176352; AT5G22280 NA NA NA NA NA NA NA NA ENOG411E721 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0461600 protein (cDNA clone:002-133-D10, full insert sequence) Q6L4Z9 Q6L4Z9_ORYSJ Os05g0461600 Os05g0461600 OJ1281_H05.15 OJ1525_A02.2 OSNPB_050461600 ENOG411E727 Q0WR81 Q0WR81_ARATH Putative membrane lipoprotein 6214 Putative membrane lipoprotein integral component of membrane [GO:0016021] locus:4010713891; AT4G17085 NA Os06g0714850 protein Q5Z9Q4 Q5Z9Q4_ORYSJ Os06g0714850 OsJ_22654 OSNPB_060714850 P0481E08.8 ENOG411E728 CYS2 Q8L5T9 CYT2_ARATH Cysteine proteinase inhibitor 2 (AtCYS-2) FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. 16090 Cysteine proteinase inhibitor 2 (AtCYS-2) extracellular region [GO:0005576]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; protease binding [GO:0002020]; defense response [GO:0006952]; negative regulation of cysteine-type endopeptidase activity [GO:2000117] locus:2045537; AT2G31980 Cysteine proteinase inhibitor Cysteine proteinase inhibitor 10 (Oryzacystatin X) (OC-X) (Oryzacystatin-10),Cysteine proteinase inhibitor 5 (Oryzacystatin V) (OC-V) (Oryzacystatin-5),Cysteine proteinase inhibitor 4 (Oryzacystatin IV) (OC-IV) (Oryzacystatin-4) P0C579,Q0JGM8,Q5N806 CYT10_ORYSJ,CYT5_ORYSJ,CYT4_ORYSJ Os04g0350100 LOC_Os04g28250 OSJNBa0038P21.11,Os01g0915401 LOC_Os01g68670 OsJ_04531,Os01g0915200 LOC_Os01g68660 OsJ_04530 P0004D12.18 FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. ENOG411E729 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0814400 protein (cDNA clone:J013075E17, full insert sequence),Os02g0814300 protein (cDNA clone:002-182-A12, full insert sequence) Q6K3D6,Q6K3D7 Q6K3D6_ORYSJ,Q6K3D7_ORYSJ Os02g0814400 OJ1293_E04.20 OsJ_08850 OSJNBa0053L11.42 OSNPB_020814400,Os02g0814300 Os02g0814300 OJ1293_E04.19 OsJ_08849 OSJNBa0053L11.41 OSNPB_020814300 ENOG411E1MN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411E1M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PA domain Os04g0611400 protein Q0JA85 Q0JA85_ORYSJ Os04g0611400 Os04g0611400 OSNPB_040611400 ENOG411E1M2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain containing protein Os12g0429000 protein (Protein kinase domain containing protein),Os12g0427100 protein,Os12g0432000 protein (Fragment),Os12g0427450 protein Q2QSH0,A0A0P0Y9R0,A0A0P0Y9Z1,A0A0N7KTY6 Q2QSH0_ORYSJ,A0A0P0Y9R0_ORYSJ,A0A0P0Y9Z1_ORYSJ,A0A0N7KTY6_ORYSJ Os12g0429000 LOC_Os12g24140 OsJ_35936 OSNPB_120429000,Os12g0427100 OSNPB_120427100,Os12g0432000 OSNPB_120432000,Os12g0427450 OSNPB_120427450 ENOG411E1W9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA polygalacturonase At3g15720-like NA NA NA NA NA NA NA ENOG411DZRB F21O3.3 Q9SRT4 Q9SRT4_ARATH O-Glycosyl hydrolases family 17 protein (Putative beta-1,3-glucanase) (Putative glucan endo-1-3-beta-glucosidase) (Putative glycosyl hydrolase) ARA:AT3G07320-MONOMER; 50604 O-Glycosyl hydrolases family 17 protein (Putative beta-1,3-glucanase) (Putative glucan endo-1-3-beta-glucosidase) (Putative glycosyl hydrolase) anchored component of plasma membrane [GO:0046658]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2098585; AT3G07320 glucan endo-1-3-beta-glucosidase Os09g0502200 protein,Os08g0525800 protein (Fragment) Q0J0Q3,A0A0P0XIQ2 Q0J0Q3_ORYSJ,A0A0P0XIQ2_ORYSJ Os09g0502200 Os09g0502200 OsJ_29910 OSNPB_090502200,Os08g0525800 OSNPB_080525800 ENOG411DYFS NET4B,NET4A Q84VY2,F4KEW8,A0A1P8AZ97 NET4B_ARATH,NET4A_ARATH,A0A1P8AZ97_ARATH Protein NETWORKED 4B,Protein NETWORKED 4A,Kinase interacting (KIP1-like) family protein FUNCTION: Plant-specific actin binding protein. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000305|PubMed:22840520}.,FUNCTION: Plant-specific actin binding protein. Associates with F-actin at the tonoplast. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000269|PubMed:22840520}. 60234,64179,60251 Protein NETWORKED 4B,Protein NETWORKED 4A,Kinase interacting (KIP1-like) family protein actin binding [GO:0003779],vacuolar membrane [GO:0005774]; actin binding [GO:0003779],actin binding [GO:0003779]; kinase activity [GO:0016301] TISSUE SPECIFICITY: Expressed in the epidermis of the root meristem and the early expansion zone. {ECO:0000269|PubMed:22840520}. locus:2064387;,locus:2161268; AT2G30500,AT5G58320 Kinase interacting NA NA NA NA NA NA NA ENOG411DYFR PORA,PORB,PORC,POR C Q42536,P21218,O48741,F4I2F8 PORA_ARATH,PORB_ARATH,PORC_ARATH,F4I2F8_ARATH Protochlorophyllide reductase A, chloroplastic (PCR A) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase A) (POR A),Protochlorophyllide reductase B, chloroplastic (PCR B) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase B) (POR B),Protochlorophyllide reductase C, chloroplastic (PCR C) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase C) (POR C),Protochlorophyllide oxidoreductase C DISRUPTION PHENOTYPE: Lethal under normal growth conditions and light-green stunted plants when grown in presence of sucrose. {ECO:0000269|PubMed:22278767}.,DISRUPTION PHENOTYPE: No visible phenotype at the levels of the whole plant or chloroplast ultrastructure; due to the redundancy with PORC. Porb and porc double mutants have a seedling-lethal pale-yellow xantha phenotype at the cotyledon stage, contain only small amounts of Chla, and possess chloroplasts with mostly unstacked thylakoid membranes. {ECO:0000269|PubMed:12848821}.,DISRUPTION PHENOTYPE: No visible phenotype at the levels of the whole plant or chloroplast ultrastructure; due to the redundancy with PORB. Porb and porc double mutants have a seedling-lethal pale-yellow xantha phenotype at the cotyledon stage, contain only small amounts of Chla, and possess chloroplasts with mostly unstacked thylakoid membranes. {ECO:0000269|PubMed:12848821}. FUNCTION: Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). PORA may also function as a photoprotectant during the transitory stage from dark to light. Functions in skotomorphogenesis, photomorphogenesis and throughout the plant life under specific light conditions. {ECO:0000269|PubMed:11785941, ECO:0000269|PubMed:20012672, ECO:0000269|PubMed:22278767}.,FUNCTION: Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). {ECO:0000269|PubMed:11785941, ECO:0000269|PubMed:12848821}.,FUNCTION: Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). {ECO:0000256|RuleBase:RU365001}. MISCELLANEOUS: The presence of TOC33 is not required for the import of PORA into plastids. {ECO:0000305|PubMed:15842619}.,MISCELLANEOUS: The presence of TOC33 is required for the import of PORA into plastids in cotyledons and true leaves. {ECO:0000305|PubMed:15842619}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT5G54190-MONOMER;,ARA:AT4G27440-MONOMER;,ARA:AT1G03630-MONOMER;MetaCyc:AT1G03630-MONOMER; 1.3.1.33; 1.3.1.33 43863,43359,43883,43626 Protochlorophyllide reductase A, chloroplastic (PCR A) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase A) (POR A),Protochlorophyllide reductase B, chloroplastic (PCR B) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase B) (POR B),Protochlorophyllide reductase C, chloroplastic (PCR C) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase C) (POR C),Protochlorophyllide oxidoreductase C chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; protochlorophyllide reductase activity [GO:0016630]; chlorophyll biosynthetic process [GO:0015995]; photomorphogenesis [GO:0009640]; photosynthesis [GO:0015979]; response to ethylene [GO:0009723]; skotomorphogenesis [GO:0009647],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; protein domain specific binding [GO:0019904]; protochlorophyllide reductase activity [GO:0016630]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979]; response to ethylene [GO:0009723],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; NADPH dehydrogenase activity [GO:0003959]; protochlorophyllide reductase activity [GO:0016630]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979],protochlorophyllide reductase activity [GO:0016630] DEVELOPMENTAL STAGE: Etiolated seedlings. {ECO:0000269|PubMed:11785941, ECO:0000269|PubMed:7659751}.,DEVELOPMENTAL STAGE: Expressed in etiolated seedlings. {ECO:0000269|PubMed:11785941}. TISSUE SPECIFICITY: Expressed in young seedlings. Not detected in leaves. {ECO:0000269|PubMed:7659751}.,TISSUE SPECIFICITY: Expressed in flowers, upper leaves, rosette and cauline leaves, stem. Not detectable in non-photosynthetic tissues such as roots and seeds. Expressed in seedlings and adult plant. {ECO:0000269|PubMed:10838072}.,TISSUE SPECIFICITY: Expressed in flowers, upper leaves, rosette and cauline leaves, stem. Not detectable in non-photosynthetic tissues such as roots and seeds. {ECO:0000269|PubMed:10838072}. locus:2153438;,locus:2124044;,locus:2020738; AT5G54190,AT4G27440,AT1G03630 Protochlorophyllide reductase Protochlorophyllide reductase A, chloroplastic (PCR A) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase A) (POR A),Protochlorophyllide reductase B, chloroplastic (PCR B) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Q7XKF3,Q8W3D9 PORA_ORYSJ,PORB_ORYSJ PORA Os04g0678700 LOC_Os04g58200 OsJ_16634 OSJNBb0017I01.1,PORB Os10g0496900 LOC_Os10g35370 OSJNBa0017E08.8 FUNCTION: Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). ENOG411DYFQ POD1 F4HVJ3,Q8LAY5,F4HVJ1,F4HVJ0,F4HVJ2 POD1_ARATH,Q8LAY5_ARATH,F4HVJ1_ARATH,F4HVJ0_ARATH,F4HVJ2_ARATH Protein POLLEN DEFECTIVE IN GUIDANCE 1,Putative splicing regulatory protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: Defective in micropylar pollen tube guidance leading to zygotic lethality. {ECO:0000269|PubMed:21954464}. FUNCTION: Probable component of the calreticulin 3 (CRT3) complex, acting probably as a co-chaperone involved in protein retention in the endoplasmic reticulum lumen. Required for micropylar pollen tube guidance. Plays an essential role in cell plate orientation or positioning in early embryo patterning. {ECO:0000269|PubMed:21954464}. 70405,29879,30017,30007,23396 Protein POLLEN DEFECTIVE IN GUIDANCE 1,Putative splicing regulatory protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein endoplasmic reticulum lumen [GO:0005788]; integral component of membrane [GO:0016021]; embryo development ending in seed dormancy [GO:0009793]; maintenance of protein localization in endoplasmic reticulum [GO:0035437]; pollen tube guidance [GO:0010183],RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in inflorescences, siliques, roots and shoots. Expressed in early embryo, endosperm, mature pollen and pollen tubes, synergide cells and weakly in antipodal cells. {ECO:0000269|PubMed:21954464}. locus:2200181;,locus:2200211; AT1G67960,AT1G67950 RNA recognition Os03g0713600 protein (Putative splicing regulatory protein) (RRM-containing protein, putative, expressed) Q8W319 Q8W319_ORYSJ Os03g0713600 LOC_Os03g50560 Os03g0713600 OSJNBa0014G15.2 OSNPB_030713600 ENOG411DYFW COX10 O64886 COX10_ARATH Protoheme IX farnesyltransferase, mitochondrial (EC 2.5.1.-) (Cytochrome c oxidase assembly protein COX10) (Heme O synthase) FUNCTION: Converts protoheme IX and farnesyl diphosphate to heme O. {ECO:0000250}. R-ATH-189451; Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100),Oxidative phosphorylation (00190),Porphyrin and chlorophyll metabolism (00860) 2.5.1.- 46475 Protoheme IX farnesyltransferase, mitochondrial (EC 2.5.1.-) (Cytochrome c oxidase assembly protein COX10) (Heme O synthase) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; farnesyltranstransferase activity [GO:0004311]; protoheme IX farnesyltransferase activity [GO:0008495]; cellular respiration [GO:0045333]; heme biosynthetic process [GO:0006783]; heme O biosynthetic process [GO:0048034] locus:2042316; AT2G44520 protoheme IX farnesyltransferase Os01g0527700 protein (Putative heme A:farnesyltransferase) (cDNA clone:001-040-G11, full insert sequence) (cDNA clone:J013109B04, full insert sequence) Q5QLH9 Q5QLH9_ORYSJ Os01g0527700 B1074C08.35 B1129H01.4 OsJ_02055 OSNPB_010527700 ENOG411DYFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA22 (Indoleacetic acid-induced protein 22),Auxin-responsive protein IAA25 (Indoleacetic acid-induced protein 25) Q69TU6,P0C128 IAA22_ORYSJ,IAA25_ORYSJ IAA22 Os06g0355300 LOC_Os06g24850 OSJNBa0021M10.5,IAA25 Os08g0109400 LOC_Os08g01780 OsJ_21291 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. MISCELLANEOUS: Lacks the EAR-like motif (domain I) which is one of the conserved features of the Aux/IAA family. ENOG411DYFZ F4II36 F4II36_ARATH RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 188072 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872] locus:2064786; AT2G40770 SNF2 family N-terminal domain Os07g0680500 protein (Fragment) A0A0N7KP25 A0A0N7KP25_ORYSJ Os07g0680500 OSNPB_070680500 ENOG411DYFY Q9LV20 WTR17_ARATH WAT1-related protein At3g18200 42846 WAT1-related protein At3g18200 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2092702; AT3G18200 auxin-induced protein WAT1-related protein,WAT1-related protein (Fragment) Q9FTZ6,A0A0P0UXA5,A0A0P0UXT3 Q9FTZ6_ORYSJ,A0A0P0UXA5_ORYSJ,A0A0P0UXT3_ORYSJ Os01g0117900 Os01g0117900 OsJ_00158 OSNPB_010117900 P0494A10.13 P0698G03.41,Os01g0117900 OSNPB_010117900 ENOG411DYFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 Os07g0693700 protein,Os03g0290400 protein (Fragment) Q0D3C7,A0A0P0VWB5 Q0D3C7_ORYSJ,A0A0P0VWB5_ORYSJ Os07g0693700 Os07g0693700 OsJ_25695 OSNPB_070693700,Os03g0290400 OSNPB_030290400 ENOG411DYFA AXS2,AXS1 Q9SGE0,Q9ZUY6 AXS2_ARATH,AXS1_ARATH UDP-D-apiose/UDP-D-xylose synthase 2,UDP-D-apiose/UDP-D-xylose synthase 1 FUNCTION: Catalyzes the conversion of UDP-D-glucuronate to a mixture of UDP-D-apiose and UDP-D-xylose. D-Apiose (3-C-hydroxymethyl-d-erythrose) is the only plant cell wall monosaccharide with a branched carbon skeleton and is found in rhamnogalacturonan II (RG-II), apiogalacturonan, and several apioglycosides (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the conversion of UDP-D-glucuronate to a mixture of UDP-D-apiose and UDP-D-xylose. D-Apiose (3-C-hydroxymethyl-d-erythrose) is the only plant cell wall monosaccharide with a branched carbon skeleton and is found in rhamnogalacturonan II (RG-II), apiogalacturonan, and several apioglycosides. {ECO:0000269|PubMed:12969423}. ARA:AT1G08200-MONOMER;,ARA:AT2G27860-MONOMER;MetaCyc:AT2G27860-MONOMER; 43790,43638 UDP-D-apiose/UDP-D-xylose synthase 2,UDP-D-apiose/UDP-D-xylose synthase 1 apoplast [GO:0048046]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; catalytic activity [GO:0003824]; coenzyme binding [GO:0050662]; cell wall organization [GO:0071555],cytoplasm [GO:0005737]; cytosol [GO:0005829]; NAD binding [GO:0051287]; UDP-glucuronate decarboxylase activity [GO:0048040]; cell wall organization [GO:0071555]; nucleotide-sugar biosynthetic process [GO:0009226] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:12969423}. locus:2200018;,locus:2041974; AT1G08200,AT2G27860 Bifunctional polymyxin resistance protein UDP-D-apiose/UDP-D-xylose synthase Q8S9Z2 AXS_ORYSJ Os01g0969100 LOC_Os01g73790 OJ1656_A11.20 OsJ_04912 FUNCTION: Catalyzes the conversion of UDP-D-glucuronate to a mixture of UDP-D-apiose and UDP-D-xylose. D-Apiose (3-C-hydroxymethyl-d-erythrose) is the only plant cell wall monosaccharide with a branched carbon skeleton and found in rhamnogalacturonan II (RG-II), apiogalacturonan, and several apioglycosides (By similarity). {ECO:0000250}. ENOG411DYFG VPS11 Q9SJ40 VPS11_ARATH Vacuolar protein-sorting-associated protein 11 homolog (AtVPS11) FUNCTION: Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment. {ECO:0000269|PubMed:12589039}. 105713 Vacuolar protein-sorting-associated protein 11 homolog (AtVPS11) endosome [GO:0005768]; HOPS complex [GO:0030897]; late endosome membrane [GO:0031902]; plant-type vacuole membrane [GO:0009705]; protein complex [GO:0043234]; metal ion binding [GO:0046872]; protein binding, bridging [GO:0030674]; endosome organization [GO:0007032]; intracellular protein transport [GO:0006886]; lysosome organization [GO:0007040]; regulation of SNARE complex assembly [GO:0035542]; vacuole organization [GO:0007033]; vesicle docking involved in exocytosis [GO:0006904] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers. {ECO:0000269|PubMed:12589039}. locus:2051254; AT2G05170 vacuolar protein sorting-associated protein 11 OSJNBa0072D21.14 protein (Os04g0382700 protein),Os04g0382700 protein (Fragment) Q7XVC4,A0A0P0W9H5 Q7XVC4_ORYSJ,A0A0P0W9H5_ORYSJ Os04g0382700 Os04g0382700 OsJ_14537 OSJNBa0072D21.14 OSNPB_040382700,Os04g0382700 OSNPB_040382700 ENOG411DYFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance Os08g0542200 protein (Putative resistance gene analog PIC27) (cDNA clone:J013042A20, full insert sequence),Os08g0543100 protein,Os08g0543050 protein (Putative resistance gene analog PIC27),Os08g0543500 protein,Os02g0307700 protein,Os02g0307166 protein,Os02g0307400 protein,Os02g0307075 protein Q6ZIT1,Q0J403,Q6ZJF8,Q0J400,A0A0P0VI50,A0A0P0VI21,A0A0P0VI42,A0A0P0VI08 Q6ZIT1_ORYSJ,Q0J403_ORYSJ,Q6ZJF8_ORYSJ,Q0J400_ORYSJ,A0A0P0VI50_ORYSJ,A0A0P0VI21_ORYSJ,A0A0P0VI42_ORYSJ,A0A0P0VI08_ORYSJ Os08g0542200 Os08g0542200 OJ1211_G06.31 OJ1521_G02.9 OSNPB_080542200,Os08g0543100 Os08g0543100 OSNPB_080543100,Os08g0543050 Os08g0543050 OJ1521_G02.23 OsJ_28143 OSNPB_080543050,Os08g0543500 Os08g0543500 OSNPB_080543500,Os02g0307700 OSNPB_020307700,Os02g0307166 OSNPB_020307166,Os02g0307400 OSNPB_020307400,Os02g0307075 OSNPB_020307075 ENOG411DYFE O65638 O65638_ARATH Pathogenesis-related thaumatin superfamily protein (Putative thaumatin protein) (Thaumatin-like protein) 30906 Pathogenesis-related thaumatin superfamily protein (Putative thaumatin protein) (Thaumatin-like protein) anchored component of membrane [GO:0031225] locus:2135129; AT4G36010 thaumatin-like protein Os10g0147200 protein (Fragment) Q0IYZ2 Q0IYZ2_ORYSJ Os10g0147200 OSNPB_100147200 ENOG411DYFD GH3.9 O82243 GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 9) (AtGH3-9) gh3.9-1 mutants had greater primary root length increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition but no obvious effects on apical dominance or leaf morphology. Female gametophyte defective-U. Grossniklaus-2007 FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ARA:GQT-2014-MONOMER; R-ATH-6798695; 6.3.2.- 66158 Putative indole-3-acetic acid-amido synthetase GH3.9 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 9) (AtGH3-9) chloroplast envelope [GO:0009941]; ligase activity [GO:0016874] locus:2043308; AT2G47750 Indole-3-acetic acid-amido synthetase Probable indole-3-acetic acid-amido synthetase GH3.11 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 11) (OsGH3-11),Os07g0671500 protein (Fragment) P0C0M3,Q0D3R0 GH311_ORYSJ,Q0D3R0_ORYSJ GH3.11 Os07g0671500 LOC_Os07g47490,Os07g0671500 Os07g0671500 OSNPB_070671500 FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ENOG411DYFK MRN17.9 Q9FFC2,A0A1P8BBC5,F4KBC9,A0A1P8BBB4,A0A1P8BBB9,F4J0D0 Q9FFC2_ARATH,A0A1P8BBC5_ARATH,F4KBC9_ARATH,A0A1P8BBB4_ARATH,A0A1P8BBB9_ARATH,F4J0D0_ARATH Prolylcarboxypeptidase-like protein (Serine carboxypeptidase S28 family protein),Serine carboxypeptidase S28 family protein R-ATH-6798695; 56454,56714,49201,41222,51869,22634 Prolylcarboxypeptidase-like protein (Serine carboxypeptidase S28 family protein),Serine carboxypeptidase S28 family protein carboxypeptidase activity [GO:0004180]; dipeptidyl-peptidase activity [GO:0008239]; serine-type peptidase activity [GO:0008236]; proteolysis [GO:0006508],integral component of membrane [GO:0016021]; carboxypeptidase activity [GO:0004180]; serine-type peptidase activity [GO:0008236],carboxypeptidase activity [GO:0004180]; serine-type peptidase activity [GO:0008236] locus:2172671;,locus:2095507; AT5G22860,AT3G28680 lysosomal Pro-X carboxypeptidase-like NA NA NA NA NA NA NA ENOG411DYFJ Q9C5I2,F4I5Q5 Q9C5I2_ARATH,F4I5Q5_ARATH PPR containing-like protein (Uncharacterized protein At1g04590),PPR containing-like protein 43043,43401 PPR containing-like protein (Uncharacterized protein At1g04590),PPR containing-like protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2197783; AT1G04590 Pentatricopeptide repeat-containing protein Os11g0125500 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J023006B12, full insert sequence),Os12g0123100 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J023037B21, full insert sequence) Q2RB50,Q2QYE5 Q2RB50_ORYSJ,Q2QYE5_ORYSJ Os11g0125500 LOC_Os11g03200 Os11g0125500 OsJ_32778 OSNPB_110125500,LOC_Os12g02950 Os12g0123100 OsJ_35053 OSNPB_120123100 ENOG411DYFI NAC035 Q9ZVP8 NAC35_ARATH NAC domain-containing protein 35 (ANAC035) (Protein LONG VEGETATIVE PHASE 1) (AtLOV1) DISRUPTION PHENOTYPE: Early flowering phenotype under long-day conditions. Hypersensitivity to cold. {ECO:0000269|PubMed:17653269}. FUNCTION: Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. MISCELLANEOUS: The gain-of-function mutant lov1-1D (T-DNA tagging) shows a late-flowering phenotype under long-day conditions, and freezing tolerance. {ECO:0000269|PubMed:17653269}. 47303 NAC domain-containing protein 35 (ANAC035) (Protein LONG VEGETATIVE PHASE 1) (AtLOV1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. locus:2056266; AT2G02450 nac domain Os01g0888300 protein,Os05g0418800 protein (Fragment) Q0JH26,A0A0N7KKS8 Q0JH26_ORYSJ,A0A0N7KKS8_ORYSJ Os01g0888300 Os01g0888300 OSNPB_010888300,Os05g0418800 OSNPB_050418800 ENOG411DYFN Q5M721,A0A178VD45,F4J6V3 PUS5_ARATH,A0A178VD45_ARATH,F4J6V3_ARATH RNA pseudouridine synthase 5 (EC 5.4.99.-) (RNA pseudouridylate synthase 5) (RNA-uridine isomerase 5),Pseudouridine synthase family protein 5.4.99.- 40562,38243,45849 RNA pseudouridine synthase 5 (EC 5.4.99.-) (RNA pseudouridylate synthase 5) (RNA-uridine isomerase 5),Pseudouridine synthase family protein pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; enzyme-directed rRNA pseudouridine synthesis [GO:0000455]; tRNA pseudouridine synthesis [GO:0031119],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522],integral component of membrane [GO:0016021]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522] locus:2100539; AT3G52260 RNA pseudourine synthase RNA pseudouridine synthase 5 (EC 5.4.99.-) (RNA pseudouridylate synthase 5) (RNA-uridine isomerase 5),Os03g0288500 protein (Fragment) Q0DST9,A0A0P0VWY2 PUS5_ORYSJ,A0A0P0VWY2_ORYSJ Os03g0288500 LOC_Os03g17920 OsJ_010020,Os03g0288500 OSNPB_030288500 ENOG411DYFM CCMH Q9XI46 CCMH_ARATH Cytochrome c-type biogenesis CcmH-like mitochondrial protein (AtCCMH) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. Arrest of embryo development at the torpedo stage. {ECO:0000269|PubMed:16236729}. No visible phenotype. Embryo defective; Cotyledon-G. Bonnard-2007 FUNCTION: Plays a central role in mitochondrial cytochrome c maturation. Probable component of a heme lyase complex involved in the reduction of apocytochrome c (PubMed:16236729). Forms a complex with CCMF proteins (CCMFC, CCMFN1 and CCMFN2) that performs the assembly of heme with c-type apocytochromes in mitochondria (PubMed:18644794). {ECO:0000269|PubMed:16236729, ECO:0000269|PubMed:18644794}. 17885 Cytochrome c-type biogenesis CcmH-like mitochondrial protein (AtCCMH) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; protein complex [GO:0043234]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; cytochrome complex assembly [GO:0017004]; embryo development ending in seed dormancy [GO:0009793] locus:2037718; AT1G15220 Cytochrome c-type biogenesis protein Cytochrome c-type biogenesis CcmH-like mitochondrial protein (OsCCMH) Q6K7S7 CCMH_ORYSJ CCMH Os02g0275100 LOC_Os02g17520 OsJ_06229 P0017G06.11 P0413A11.41 FUNCTION: Plays a role in mitochondrial cytochrome c maturation. Probable component of a heme lyase complex involved in the reduction of apocytochrome c. {ECO:0000250|UniProtKB:Q9XI46}. ENOG411DYF3 MAE1.1 Q93ZS1,Q9FJH9,A0A1P8BDS0,F4J4D7 LPAH2_ARATH,LPAH1_ARATH,A0A1P8BDS0_ARATH,F4J4D7_ARATH P-loop NTPase domain-containing protein LPA1 homolog 2 (Protein LOW PHYTIC ACID 1 homolog 2),P-loop NTPase domain-containing protein LPA1 homolog 1 (Protein LOW PHYTIC ACID 1 homolog 1),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions and normal levels of phytic acid in seeds. {ECO:0000269|PubMed:20734061}.,DISRUPTION PHENOTYPE: Strong reduction in seed phytic acid with a molar equivalent increase in inorganic phosphate. {ECO:0000269|PubMed:20734061}. Low phytic acid levels in seeds-T. Tai-2010 FUNCTION: May be not required for the accumulation of phytic acid in seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000269|PubMed:20734061}.,FUNCTION: Required for the accumulation of phytic acid in seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000269|PubMed:20734061}. 80249,82541,59511,78168 P-loop NTPase domain-containing protein LPA1 homolog 2 (Protein LOW PHYTIC ACID 1 homolog 2),P-loop NTPase domain-containing protein LPA1 homolog 1 (Protein LOW PHYTIC ACID 1 homolog 1),P-loop containing nucleoside triphosphate hydrolases superfamily protein myo-inositol hexakisphosphate biosynthetic process [GO:0010264],hydrolase activity [GO:0016787] locus:2096865;,locus:2159270; AT3G45090,AT5G60760 2-phosphoglycerate kinase-related P-loop NTPase domain-containing protein LPA1 (Protein LOW PHYTIC ACID 1) (OsLpa1),Os02g0819400 protein B9F4I8,A0A0P0VRF6 LPA1_ORYSJ,A0A0P0VRF6_ORYSJ LPA1 Os02g0819400 LOC_Os02g57400 OsJ_08893,Os02g0819400 OSNPB_020819400 DISRUPTION PHENOTYPE: Strong reduction in seed phytic acid with a molar equivalent increase in inorganic phosphate. {ECO:0000269|PubMed:18566795}. FUNCTION: Required for the accumulation of phytic acid in seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000269|PubMed:18566795}. ENOG411DYF2 PSS1 F4HXY7,F4HXY6 PSS1_ARATH,F4HXY6_ARATH CDP-diacylglycerol--serine O-phosphatidyltransferase 1 (EC 2.7.8.8) (Phosphatidylserine synthase 1),Phosphatidyl serine synthase family protein DISRUPTION PHENOTYPE: Mostly embryonic lethality with low frequencies of dwarf infertile plants. {ECO:0000269|PubMed:21554450}. FUNCTION: Catalyzes a base-exchange reaction in which the polar head group of phosphatidylethanolamine (PE) or phosphatidylcholine (PC) is replaced by L-serine. Is essential for phosphatidylserine (PS) biosynthesis and PE seems to be the most plausible substrate. Plays an important role in microspore maturation. {ECO:0000269|PubMed:21554450}. PATHWAY: Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 1/2. R-ATH-1483101; 2.7.8.8 49518,52424 CDP-diacylglycerol--serine O-phosphatidyltransferase 1 (EC 2.7.8.8) (Phosphatidylserine synthase 1),Phosphatidyl serine synthase family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; CDP-diacylglycerol-serine O-phosphatidyltransferase activity [GO:0003882]; microsporogenesis [GO:0009556]; phosphatidylethanolamine biosynthetic process [GO:0006646]; phosphatidylserine biosynthetic process [GO:0006659],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; phosphatidylserine biosynthetic process [GO:0006659] DEVELOPMENTAL STAGE: Expressed in anthers and microspores at floral stages 9 to 12, tapetum at floral stages 7 to 11, mature embryos at 5 days after flowering and dry seed embryos. TISSUE SPECIFICITY: Expressed in trichomes, leaf veins and root vasculature. {ECO:0000269|PubMed:21554450}. locus:2037788; AT1G15110 phosphatidylserine synthase CDP-diacylglycerol--serine O-phosphatidyltransferase 1 (EC 2.7.8.8) (Phosphatidylserine synthase 1),CDP-diacylglycerol--serine O-phosphatidyltransferase 2 (EC 2.7.8.8) (Phosphatidylserine synthase 2),CDP-diacylglycerol--serine O-phosphatidyltransferase 3 (EC 2.7.8.8) (Phosphatidylserine synthase 3),Os01g0118300 protein,Os05g0554400 protein,Os01g0683550 protein Q0JR55,Q6I628,Q5N8Q3,A0A0P0UY73,A0A0P0WQS8,A0A0P0V6P6 PSS1_ORYSJ,PSS2_ORYSJ,PSS3_ORYSJ,A0A0P0UY73_ORYSJ,A0A0P0WQS8_ORYSJ,A0A0P0V6P6_ORYSJ PSS1 Os01g0118300 LOC_Os01g02890,PSS2 Os05g0554400 LOC_Os05g48060 OJ1263_E10.9 OsJ_19482,PSS3 Os01g0683500/Os01g0683550 LOC_Os01g49024 P0445E10.10,Os01g0118300 OSNPB_010118300,Os05g0554400 OSNPB_050554400,Os01g0683550 OSNPB_010683550 FUNCTION: Catalyzes a base-exchange reaction in which the polar head group of phosphatidylethanolamine (PE) or phosphatidylcholine (PC) is replaced by L-serine. {ECO:0000250}. ENOG411DYF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os03g0855100 protein (Putative DNA-binding protein) (WRKY DNA binding domain containing protein, expressed) (cDNA clone:002-147-E06, full insert sequence) Q84T64 Q84T64_ORYSJ Os03g0855100 LOC_Os03g63810 Os03g0855100 Os03g63810 OsJ_13422 OSNPB_030855100 ENOG411DYF0 MET2,MET4,MET3,DMT1,MET1 Q9M0S8,O23273,Q9T0I1,P34881,A0A1P8BCY7 DNMT2_ARATH,DNMT4_ARATH,DNMT3_ARATH,DNMT1_ARATH,A0A1P8BCY7_ARATH DNA (cytosine-5)-methyltransferase 2 (EC 2.1.1.37) (DNA methyltransferase 2) (DNA methyltransferase IIb),DNA (cytosine-5)-methyltransferase 4 (EC 2.1.1.37) (DNA methyltransferase 4) (DNA methyltransferase IIa) (DMT02) (MET02),DNA (cytosine-5)-methyltransferase 3 (EC 2.1.1.37) (DNA methyltransferase 3) (DNA methyltransferase III) (Protein MATERNAL EFFECT EMBRYO ARREST 57),DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (DNA methyltransferase 01) (DNA methyltransferase 2) (DNA methyltransferase AthI) (DNA Metase AthI) (M.AthI) (DNA methyltransferase DDM2) (Protein DECREASED DNA METHYLATION 2),DNA (cytosine-5)-methyltransferase (EC 2.1.1.37) DISRUPTION PHENOTYPE: Endosperm development arrested. {ECO:0000269|PubMed:15634699}.,DISRUPTION PHENOTYPE: Late-flowering phenotype caused by ectopic expression of FWA gene. Asymmetric zygote division and abnormal embryos. Displays genome hypomethylation, strong reduction of CpG methylation in centromeric repeats, reduction of heterochromatin and chromocenter size and gametes with fully demethylated and hemidemethylated DNA. {ECO:0000269|PubMed:16531498}. Complete elimination of CG methylation from AtSN1 but only a minor effect on non-CG methylation and H3K9me2 was observed at wild-type levels.,Phenotype not described.,embryos developed abnormally. Mutant zygotes divided more symmetrically than wild-type. Embryo defective-R. Fischer-2007 FUNCTION: Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells (By similarity). {ECO:0000250}.,FUNCTION: Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells (By similarity). Required during the endosperm development in seeds. {ECO:0000250, ECO:0000269|PubMed:15634699}.,FUNCTION: Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells. Required for MEA promoter methylation in seeds. {ECO:0000269|PubMed:12456661, ECO:0000269|PubMed:12663548, ECO:0000269|PubMed:12669067, ECO:0000269|PubMed:14667411, ECO:0000269|PubMed:16531498, ECO:0000269|PubMed:17012404, ECO:0000269|PubMed:18820427}. ARA:AT5G49160-MONOMER; R-ATH-212300; 2.1.1.37 171155,171586,160212,172431,162137 DNA (cytosine-5)-methyltransferase 2 (EC 2.1.1.37) (DNA methyltransferase 2) (DNA methyltransferase IIb),DNA (cytosine-5)-methyltransferase 4 (EC 2.1.1.37) (DNA methyltransferase 4) (DNA methyltransferase IIa) (DMT02) (MET02),DNA (cytosine-5)-methyltransferase 3 (EC 2.1.1.37) (DNA methyltransferase 3) (DNA methyltransferase III) (Protein MATERNAL EFFECT EMBRYO ARREST 57),DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (DNA methyltransferase 01) (DNA methyltransferase 2) (DNA methyltransferase AthI) (DNA Metase AthI) (M.AthI) (DNA methyltransferase DDM2) (Protein DECREASED DNA METHYLATION 2),DNA (cytosine-5)-methyltransferase (EC 2.1.1.37) nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; covalent chromatin modification [GO:0016569],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; covalent chromatin modification [GO:0016569]; DNA mediated transformation [GO:0009294],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; covalent chromatin modification [GO:0016569]; embryo development ending in seed dormancy [GO:0009793],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; methyltransferase activity [GO:0008168]; covalent chromatin modification [GO:0016569]; DNA mediated transformation [GO:0009294]; DNA methylation on cytosine within a CG sequence [GO:0010424]; maintenance of DNA methylation [GO:0010216]; negative regulation of flower development [GO:0009910]; regulation of gene expression by genetic imprinting [GO:0006349]; zygote asymmetric cytokinesis in embryo sac [GO:0010069],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed at low levels in vegetative and floral organs. {ECO:0000269|PubMed:10579493}.,TISSUE SPECIFICITY: Expressed in flowers, embryos and endosperm. {ECO:0000269|PubMed:17012404}. locus:2122313;,locus:2129450;,locus:2140892;,locus:2155959; AT4G08990,AT4G14140,AT4G13610,AT5G49160 Cytosine-specific methyltransferase DNA (cytosine-5)-methyltransferase 1B (OsMET1b) (EC 2.1.1.37) (DNA methyltransferase 1-2) (OsMET1-2),DNA (cytosine-5)-methyltransferase 1A (OsMET1a) (EC 2.1.1.37) (DNA methyltransferase 1-1) (OsMET1-1) B1Q3J6,Q7Y1I7 DNM1B_ORYSJ,DNM1A_ORYSJ MET1B MET1-2 Os07g0182900 LOC_Os07g08500 OJ1506_G02.17,MET1A MET1-1 Os03g0798300 LOC_Os03g58400 OsJ_12965 OSJNBa0094F01.4 FUNCTION: Probably methylates CpG residues and maintains DNA methylation.,FUNCTION: Probably methylates CpG residues and maintains DNA methylation. May be involved in methylation-dependent gene silencing. {ECO:0000269|PubMed:14513380}. ENOG411DYF7 Q9CA16 Q9CA16_ARATH Glycosyl hydrolase superfamily protein (Putative endo-1,3-beta-glucanase; 56885-55794) ARA:AT1G77780-MONOMER; 40265 Glycosyl hydrolase superfamily protein (Putative endo-1,3-beta-glucanase; 56885-55794) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2203191; AT1G77780 beta-13-glucanase Beta-1,3-glucanase (Os01g0801500 protein) (cDNA clone:001-020-H06, full insert sequence) (cDNA clone:J023110B18, full insert sequence),'putative beta-1,3-glucanase (Os05g0495900 protein) (cDNA clone:J023011M23, full insert sequence) Q8S2G6,Q65X69 Q8S2G6_ORYSJ,Q65X69_ORYSJ Os01g0801500 Os01g0801500 OsJ_03777 OSNPB_010801500 P0003D09.22,Os05g0495900 Os05g0495900 OJ1579_G03.14 OSNPB_050495900 ENOG411DYF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411DYF5 HIT4,MXK3.14 A2RVJ8,A0A1P8BD37,F4KF59,F4KGF3 HIT4_ARATH,A0A1P8BD37_ARATH,F4KF59_ARATH,F4KGF3_ARATH Protein HEAT INTOLERANT 4,Serine/Threonine-kinase DISRUPTION PHENOTYPE: Embryo lethal in homozygous plants. Hypersensitivity to heat leading to the inability to withstand prolonged heat stress (4 days at 37 degrees Celsius), probably due to impaired heat-induced chromocentre decondensation associated with attenuated heat reactivation of various transcriptional gene silencing (TGS) loci. {ECO:0000269|PubMed:23408827}. FUNCTION: Essential protein required for basal thermotolerance, especially during heat-induced chromocentre decondensation, thus regulating transcriptional gene silencing (TGS). {ECO:0000269|PubMed:23408827, ECO:0000269|PubMed:25329561}. 50517,53523,54292,54599 Protein HEAT INTOLERANT 4,Serine/Threonine-kinase chromocenter [GO:0010369]; nucleolus [GO:0005730]; heat acclimation [GO:0010286],kinase activity [GO:0016301] DEVELOPMENTAL STAGE: Expressed predominately at the early stages during embryogenesis. {ECO:0000269|PubMed:23408827}. locus:2184053;,locus:2177669; AT5G10010,AT5G64910 Inherit from euNOG: ATP GTP binding protein ATP/GTP binding protein-like (Os02g0519300 protein),OSJNBa0015K02.19 protein (Os04g0661300 protein) (cDNA clone:001-013-G11, full insert sequence) (cDNA clone:J023059N04, full insert sequence),Os02g0519300 protein Q6H4L7,Q7XQZ5,A0A0P0VJR5 Q6H4L7_ORYSJ,Q7XQZ5_ORYSJ,A0A0P0VJR5_ORYSJ P0461D06.24-1 Os02g0519300 OSNPB_020519300,Os04g0661300 Os04g0661300 OsJ_16499 OSJNBa0015K02.19 OSNPB_040661300,Os02g0519300 OSNPB_020519300 ENOG411DYF4 CRR2 Q9STF3 PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 2) Plants display impaired intergenic processing of the polycistronic transcript rps7-ndhB resulting in no detectable mature form of ndhB mRNA.,No described phenotype. This line was used to assess the formation of the NDH complex by introducing into this double mutant a transgenic copy of the wild-type CRR7 gene. Decreased post-illumination chlorophyll fluorescence; No other phenotypes detected-T. Shikanai-2003 FUNCTION: Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. {ECO:0000269|PubMed:14617084}. 74340 Pentatricopeptide repeat-containing protein At3g46790, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 2) chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA processing [GO:0031425]; polycistronic mRNA processing [GO:0031426]; RNA modification [GO:0009451] locus:2102852; AT3G46790 Pentatricopeptide repeat-containing protein At3g46790 Os01g0848300 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q941T0 Q941T0_ORYSJ Os01g0848300 OsJ_04076 OSNPB_010848300 P0005H10.25 ENOG411DYF9 C0SUW8,Q9SRE1,Q9ZUX2,F4I421,F4IGQ9,F4I410,F4I420 C0SUW8_ARATH,Q9SRE1_ARATH,Q9ZUX2_ARATH,F4I421_ARATH,F4IGQ9_ARATH,F4I410_ARATH,F4I420_ARATH Eukaryotic translation initiation factor 2 (eIF-2) family protein (Uncharacterized protein At1g21160) (Fragment),Eukaryotic translation initiation factor 2 (eIF-2) family protein (Putative translation initiation factor IF-2; 35582-30916),Eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (Eukaryotic translation initiation factor 2 family protein/eIF-2 family protein) (Putative translation initiation factor IF2),Eukaryotic translation initiation factor 2 (eIF-2) family protein,Eukaryotic translation initiation factor 2 family protein / eIF-2 family protein R-ATH-72706; 121119,135051,53331,129463,53459,131362,142116 Eukaryotic translation initiation factor 2 (eIF-2) family protein (Uncharacterized protein At1g21160) (Fragment),Eukaryotic translation initiation factor 2 (eIF-2) family protein (Putative translation initiation factor IF-2; 35582-30916),Eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (Eukaryotic translation initiation factor 2 family protein/eIF-2 family protein) (Putative translation initiation factor IF2),Eukaryotic translation initiation factor 2 (eIF-2) family protein,Eukaryotic translation initiation factor 2 family protein / eIF-2 family protein GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation initiation factor activity [GO:0003743],plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation initiation factor activity [GO:0003743] locus:2199562;,locus:2030126;,locus:2042097;,locus:2030041;,locus:2030116; AT2G27700,AT1G76820,AT1G76720,AT1G76810 Translation initiation factor Os05g0592600 protein,Os12g0503200 protein (Fragment),Os05g0592600 protein (Fragment),Os01g0583900 protein,Os01g0583700 protein Q0DFG2,C7JAC3,A0A0P0WRS4,A0A0P0V4I0,A0A0P0V4I2,A0A0P0WRM1,A0A0N7KU30 Q0DFG2_ORYSJ,C7JAC3_ORYSJ,A0A0P0WRS4_ORYSJ,A0A0P0V4I0_ORYSJ,A0A0P0V4I2_ORYSJ,A0A0P0WRM1_ORYSJ,A0A0N7KU30_ORYSJ Os05g0592600 Os05g0592600 OSNPB_050592600,Os12g0503200 Os12g0503200 OSNPB_120503200,Os05g0592600 OSNPB_050592600,Os01g0583900 OSNPB_010583900,Os01g0583700 OSNPB_010583700,Os12g0503200 OSNPB_120503200 ENOG411DYF8 Q9S7L6,F4K1E8 Q9S7L6_ARATH,F4K1E8_ARATH At2g05250/F5G3.15 (DNAJ heat shock N-terminal domain-containing protein) (Expressed protein) (Uncharacterized protein At2g05230) (Uncharacterized protein At2g05250),DnaJ heat shock amino-terminal domain protein (DUF3444) 79023,48670 At2g05250/F5G3.15 (DNAJ heat shock N-terminal domain-containing protein) (Expressed protein) (Uncharacterized protein At2g05230) (Uncharacterized protein At2g05250),DnaJ heat shock amino-terminal domain protein (DUF3444) locus:2051244;locus:2051274;,locus:504954837; AT2G05230AT2G05250;,AT5G35753 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411DW4S Q8GW53,Q94K59,A0A1P8B6Q4,A0A1P8B6Q8,F4JQV8 Q8GW53_ARATH,Q94K59_ARATH,A0A1P8B6Q4_ARATH,A0A1P8B6Q8_ARATH,F4JQV8_ARATH At4g24340 (Phosphorylase superfamily protein) (Uncharacterized protein At4g24340/T22A6_170),Phosphorylase superfamily protein (Uncharacterized protein At4g24350),Phosphorylase superfamily protein 36893,36696,21928,24419,32277 At4g24340 (Phosphorylase superfamily protein) (Uncharacterized protein At4g24340/T22A6_170),Phosphorylase superfamily protein (Uncharacterized protein At4g24350),Phosphorylase superfamily protein catalytic activity [GO:0003824]; nucleoside metabolic process [GO:0009116],plant-type cell wall [GO:0009505]; catalytic activity [GO:0003824]; nucleoside metabolic process [GO:0009116]; response to wounding [GO:0009611] locus:2136002;,locus:2136012; AT4G24340,AT4G24350 bark storage protein Os06g0112100 protein (Putative vegetative storage protein win4.5) (cDNA clone:006-205-D08, full insert sequence) (cDNA clone:006-304-H03, full insert sequence) (cDNA clone:006-309-D05, full insert sequence) Q5VRZ8 Q5VRZ8_ORYSJ Os06g0112100 OsJ_19869 OSNPB_060112100 P0029D06.21 ENOG411DW4R GC1,SULA Q9SJU9,A0A1P8B167 GC1_ARATH,A0A1P8B167_ARATH Epimerase family protein SDR39U1 homolog, chloroplastic (EC 1.1.1.-) (Protein GIANT CHLOROPLAST 1) (Protein SulA homolog) (AtSulA),NAD(P)-binding Rossmann-fold superfamily protein FUNCTION: Putative NADP-dependent oxidoreductase that acts as positive regulator of chloroplast division. May play a role at an early stage of the division process. {ECO:0000269|PubMed:15120068}. MISCELLANEOUS: Plants silencing GC1 show greatly enlarged chloroplasts containing densely packed thylakoid membranes in mesophyll cells and leaves with decreased rates of CO(2) assimilation. {ECO:0000269|PubMed:15120068}. 1.1.1.- 37746,39447 Epimerase family protein SDR39U1 homolog, chloroplastic (EC 1.1.1.-) (Protein GIANT CHLOROPLAST 1) (Protein SulA homolog) (AtSulA),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; plastid [GO:0009536]; coenzyme binding [GO:0050662]; oxidoreductase activity [GO:0016491]; protein homodimerization activity [GO:0042803]; chloroplast fission [GO:0010020],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] TISSUE SPECIFICITY: Expressed in leaves, stems and flower buds. {ECO:0000269|PubMed:15120068, ECO:0000269|PubMed:15208387}. locus:2050090; AT2G21280 epimerase family protein slr1223-like Cell division inhibitor-like (Os02g0834700 protein),Os02g0834700 protein Q6EP22,A0A0P0VS41 Q6EP22_ORYSJ,A0A0P0VS41_ORYSJ P0264G11.15-1 Os02g0834700 OSJNOa246I10.5-1 OSNPB_020834700,Os02g0834700 OSNPB_020834700 ENOG411DW4W TPLATE F4J8D3,A0A1I9LST8 TPLAT_ARATH,A0A1I9LST8_ARATH Protein TPLATE,ARM repeat superfamily protein DISRUPTION PHENOTYPE: Male sterility due to the production of shriveled pollen unable to germinate. {ECO:0000269|PubMed:17189342}. Complete male gametophyte defective-D. Geelen-2006 FUNCTION: Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position. {ECO:0000269|PubMed:17189342}. 130908,93865 Protein TPLATE,ARM repeat superfamily protein cell plate [GO:0009504]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; endocytosis [GO:0006897]; pollen development [GO:0009555] TISSUE SPECIFICITY: Expressed at the pollen tube exit site in germinating pollen. {ECO:0000269|PubMed:17189342}. locus:2082299; AT3G01780 NA Os02g0793100 protein,Os11g0175900 protein (Fragment) Q6K685,Q0IU89 Q6K685_ORYSJ,Q0IU89_ORYSJ Os02g0793100 Os02g0793100 OJ1249_F12.29 OSNPB_020793100 P0700F06.17,Os11g0175900 OSNPB_110175900 ENOG411DW4V FPP7 Q9SLN1 FPP7_ARATH Filament-like plant protein 7 (AtFPP7) 101423 Filament-like plant protein 7 (AtFPP7) locus:2046723; AT2G23360 plant protein Os04g0649200 protein (Fragment) A0A0P0WFL1 A0A0P0WFL1_ORYSJ Os04g0649200 OSNPB_040649200 ENOG411DW4U Q8LF12,Q9XIA5,Q84K82,Q9FN27,A0A1P8ARH4,F4JYS8 Q8LF12_ARATH,Q9XIA5_ARATH,Q84K82_ARATH,Q9FN27_ARATH,A0A1P8ARH4_ARATH,F4JYS8_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At5g20550) (Ethylene-forming-enzyme-like dioxygenase-like),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Similar to ethylene-forming-enzyme-like dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative ethylene-forming dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Ethylene-forming-enzyme-like dioxygenase) (Oxidoreductase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT5G20550-MONOMER;,ARA:AT1G49390-MONOMER;,ARA:AT5G20400-MONOMER;,ARA:AT5G54000-MONOMER; 39526,39608,39678,40025,31120,31225 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At5g20550) (Ethylene-forming-enzyme-like dioxygenase-like),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Similar to ethylene-forming-enzyme-like dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative ethylene-forming dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Ethylene-forming-enzyme-like dioxygenase) (Oxidoreductase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872],cytosol [GO:0005829]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2149907;,locus:2010242;,locus:2149214;,locus:2154744; AT5G20550,AT1G49390,AT5G20400,AT5G54000 2OG-Fe(II) oxygenase superfamily Os06g0176500 protein (Os06g0177700 protein),Os02g0320800 protein (Fragment),Os06g0176700 protein (Os06g0178100 protein) (Os06g0178500 protein) (Putative iron/ascorbate-dependent oxidoreductase),Os06g0178700 protein (Putative iron/ascorbate-dependent oxidoreductase) (cDNA clone:J033115N23, full insert sequence),Os02g0280700 protein (Putative iron/ascorbate-dependent oxidoreductase) (cDNA clone:J013034J09, full insert sequence),Os06g0176650 protein (Os06g0178450 protein),Os06g0176850 protein (Os06g0178650 protein) (Fragment) A0A0P0WTN5,Q0E1N9,Q8H620,Q8H618,Q6ES21,A0A0P0WTI2,A0A0P0WTS0 A0A0P0WTN5_ORYSJ,Q0E1N9_ORYSJ,Q8H620_ORYSJ,Q8H618_ORYSJ,Q6ES21_ORYSJ,A0A0P0WTI2_ORYSJ,A0A0P0WTS0_ORYSJ Os06g0177700 Os06g0176500 OSNPB_060176500 OSNPB_060177700,Os02g0320800 Os02g0320800 OSNPB_020320800,Os06g0176700 Os06g0178500 Os06g0178100 OsJ_20326 OSJNBa0035I03.5 OSNPB_060176700 OSNPB_060178500 P0015E04.29,Os06g0178700 Os06g0178700 OSJNBa0035I03.7 OSNPB_060178700,Os02g0280700 OsJ_06258 OSNPB_020280700 P0669G10.9,Os06g0176650 Os06g0178450 OSNPB_060176650 OSNPB_060178450,Os06g0178650 Os06g0176850 OSNPB_060176850 OSNPB_060178650 ENOG411DW43 DTX56 O49660 DTX56_ARATH Protein DETOXIFICATION 56 (AtDTX56) (Multidrug and toxic compound extrusion protein 56) (MATE protein 56) (Protein RESISTANT TO HIGH CARBON DIOXIDE 1) DISRUPTION PHENOTYPE: Defective in stomatal responses to Co(2). Showed more rapid leaf expansion under high CO(2) condition as compared with the wild type. {ECO:0000269|PubMed:25599916}. FUNCTION: Could function as a HCO(3)(-) -sensing component in the CO(2) signaling pathway in guard cells. Acts as an upsteam repressor of HT1. Plays a role in stomatal response to CO(2). {ECO:0000269|PubMed:25599916}. R-ATH-425366; 53702 Protein DETOXIFICATION 56 (AtDTX56) (Multidrug and toxic compound extrusion protein 56) (MATE protein 56) (Protein RESISTANT TO HIGH CARBON DIOXIDE 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; cellular response to carbon dioxide [GO:0071244]; drug transmembrane transport [GO:0006855]; regulation of stomatal opening [GO:1902456] TISSUE SPECIFICITY: Preferentially expressed in guard cells. {ECO:0000269|PubMed:25599916}. locus:2132619; AT4G22790 Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q84M81 Q84M81_ORYSJ Os03g0858800 LOC_Os03g64150 Os03g0858800 OsJ_13445 OSJNBa0033P04.12 OSJNBa0059G06.4 OSNPB_030858800 ENOG411DW41 T12J13.2 Q9M843,Q9S7M7,A0A1I9LLK0 Q9M843_ARATH,Q9S7M7_ARATH,A0A1I9LLK0_ARATH Plasma-membrane choline transporter family protein (T27C4.8 protein),F20H23.27 protein (Plasma-membrane choline transporter family protein) (T12J13.2 protein) (Uncharacterized protein At3g03700) (Uncharacterized protein At3g03700/F20H23_27),Plasma-membrane choline transporter family protein 53121,53055,50843 Plasma-membrane choline transporter family protein (T27C4.8 protein),F20H23.27 protein (Plasma-membrane choline transporter family protein) (T12J13.2 protein) (Uncharacterized protein At3g03700) (Uncharacterized protein At3g03700/F20H23_27),Plasma-membrane choline transporter family protein integral component of membrane [GO:0016021] locus:2100865;,locus:2079444; AT3G04440,AT3G03700 Plasma-membrane choline transporter Expressed protein (Os03g0651300 protein) Q10FY4 Q10FY4_ORYSJ Os03g0651300 LOC_Os03g44840 Os03g0651300 OsJ_11929 OSNPB_030651300 ENOG411DW47 CAT2,CAT1 P25819,Q96528,A0A1P8B564,F4JM86 CATA2_ARATH,CATA1_ARATH,A0A1P8B564_ARATH,F4JM86_ARATH Catalase-2 (EC 1.11.1.6),Catalase-1 (EC 1.11.1.6),Catalase (EC 1.11.1.6) Photorespiratory mutant that shows a wild-type phenotype when grown at high CO2 (3000-4500 ppm) or in air at irradiance below 30 µmol.m-2s-1. Significantly decreased rosette biomass when grown in air above 100 µmol.m-2s-1 irradiance. Lesions appear in a photoperiod-dependent manner : few or none are observed in 8h photoperiods even up to 400 µmol.m-2s-1 growth irradiance while in 16h photoperiods lesion formation is observed at 100 µmol.m-2s-1 irradiance and becomes extensive as irradiance is increased. Despite lesion formation plants survive to flowering though final rosette mass and seed production are decreased compared to wild-type.,Significant decrease in catalase activity; resistance to hydroxyurea (HU) a ribonucleotide reductase inhibitor effective in HIV sickle cell disease and blood cancer therapy.,Reduced stature pale green color and reduced number of secondary roots. Decreased catalase activity. Increased H2O2 and increased sensitivity to H2O2. Also increased uptake of Li+ Na+ and norspermine. Decreased sensitivity to litium most likely due to decrease in sensitivity to ethylene. Dwarf, pale green, and few lateral roots under low light-R. Serrano-2007 FUNCTION: Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.,FUNCTION: Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. {ECO:0000256|RuleBase:RU004142}. MetaCyc:AT4G35090-MONOMER; R-ATH-3299685;R-ATH-6798695; 1.11.1.6 56931,56762,56949,54995 Catalase-2 (EC 1.11.1.6),Catalase-1 (EC 1.11.1.6),Catalase (EC 1.11.1.6) chloroplast [GO:0009507]; cytosolic ribosome [GO:0022626]; glyoxysome [GO:0009514]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; stromule [GO:0010319]; catalase activity [GO:0004096]; cobalt ion binding [GO:0050897]; heme binding [GO:0020037]; cell death [GO:0008219]; cell redox homeostasis [GO:0045454]; cellular response to nitrogen starvation [GO:0006995]; cellular response to phosphate starvation [GO:0016036]; cellular response to sulfate starvation [GO:0009970]; hydrogen peroxide catabolic process [GO:0042744]; photoperiodism [GO:0009648]; response to cold [GO:0009409]; response to hydrogen peroxide [GO:0042542]; response to light stimulus [GO:0009416]; response to oxidative stress [GO:0006979],cell wall [GO:0005618]; chloroplast envelope [GO:0009941]; cytosolic ribosome [GO:0022626]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; catalase activity [GO:0004096]; cobalt ion binding [GO:0050897]; heme binding [GO:0020037]; cellular response to nitrogen starvation [GO:0006995]; cellular response to phosphate starvation [GO:0016036]; cellular response to sulfate starvation [GO:0009970]; hydrogen peroxide catabolic process [GO:0042744]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to hydrogen peroxide [GO:0042542]; response to light stimulus [GO:0009416],catalase activity [GO:0004096]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2131591;,locus:2034428; AT4G35090,AT1G20630 Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (By similarity) Catalase isozyme B (CAT-B) (EC 1.11.1.6),Catalase (EC 1.11.1.6) Q0D9C4,Q10S82 CATA2_ORYSJ,Q10S82_ORYSJ CATB Os06g0727200 LOC_Os06g51150 OsJ_021830 P0017G10.17,LOC_Os03g03910 Os03g0131200 OsJ_09293 OSNPB_030131200 FUNCTION: Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.,FUNCTION: Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. {ECO:0000256|RuleBase:RU004142}. ENOG411DW44 MOCS2 O22827 MOC2B_ARATH Molybdopterin synthase catalytic subunit (EC 2.8.1.12) (Molybdenum cofactor synthesis protein 2 large subunit) (Molybdenum cofactor synthesis protein 2B) (MOCS2B) FUNCTION: Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group. {ECO:0000255|HAMAP-Rule:MF_03052}. PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03052}. ARA:AT2G43760-MONOMER;MetaCyc:AT2G43760-MONOMER; R-ATH-947581; 2.8.1.12 22216 Molybdopterin synthase catalytic subunit (EC 2.8.1.12) (Molybdenum cofactor synthesis protein 2 large subunit) (Molybdenum cofactor synthesis protein 2B) (MOCS2B) cytosol [GO:0005829]; molybdopterin synthase complex [GO:0019008]; molybdopterin synthase activity [GO:0030366]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; molybdopterin cofactor biosynthetic process [GO:0032324] locus:2043944; AT2G43760 Molybdopterin synthase Molybdopterin synthase catalytic subunit (EC 2.8.1.12) (Molybdenum cofactor synthesis protein 2 large subunit) (Molybdenum cofactor synthesis protein 2B) (MOCS2B),Os02g0517366 protein (Fragment) Q6Z2X3,A0A0P0VJP7 MOC2B_ORYSJ,A0A0P0VJP7_ORYSJ MOCS2 Os02g0140300 LOC_Os02g04740 OJ1679_B08.15 OsJ_005176,Os02g0517366 OSNPB_020517366 FUNCTION: Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group. {ECO:0000255|HAMAP-Rule:MF_03052}. ENOG411E49T HMGB2,HMGB3 O49596,A0A1P8ATJ7 HMGB2_ARATH,A0A1P8ATJ7_ARATH High mobility group B protein 2 (High mobility group protein B 1) (AtHMGbeta1) (HMG beta 1) (Nucleosome/chromatin assembly factor group D 02) (Nucleosome/chromatin assembly factor group D 2),High mobility group B3 FUNCTION: Binds preferentially double-stranded DNA. Confers sensitivity to salt and drought stresses. {ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:9461286}. 15982,11293 High mobility group B protein 2 (High mobility group protein B 1) (AtHMGbeta1) (HMG beta 1) (Nucleosome/chromatin assembly factor group D 02) (Nucleosome/chromatin assembly factor group D 2),High mobility group B3 chromatin [GO:0000785]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; structural constituent of chromatin [GO:0030527]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin assembly or disassembly [GO:0006333],nucleus [GO:0005634]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Mostly expressed in cotyledons, hypocotyls, leaves, and flowers (excluding pedicels), also present in roots and stems. {ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:17316617, ECO:0000269|PubMed:9461286}. locus:505006135; AT1G20693 Hmg1 2-like protein HMG protein (HMGB1) (Os06g0728000 protein) (cDNA clone:001-047-C12, full insert sequence) Q5Z7N3 Q5Z7N3_ORYSJ Os06g0728000 Os06g0728000 OsJ_22728 OSNPB_060728000 P0017G10.31 ENOG411E49U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0242900 protein A0A0P0X4J1 A0A0P0X4J1_ORYSJ Os07g0242900 OSNPB_070242900 ENOG411E49V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cold induced protein-like (Os01g0739500 protein) Q94JH8 Q94JH8_ORYSJ Os01g0739500 OsJ_03395 OSNPB_010739500 P0638D12.20 ENOG411E49W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin-tyrosine ligase family NA NA NA NA NA NA NA ENOG411E49P LEA29 Q9LW12 LEA29_ARATH Late embryogenesis abundant protein 29 (LEA 76 homolog) FUNCTION: Involved dehydration tolerance. {ECO:0000250|UniProtKB:Q96270}. 24186 Late embryogenesis abundant protein 29 (LEA 76 homolog) cytosol [GO:0005829]; nucleus [GO:0005634] DEVELOPMENTAL STAGE: During seed development, expressed at late embryogenesis and in dry seeds. {ECO:0000269|PubMed:18931353}. locus:2093307; AT3G15670 late embryogenesis abundant protein Late embryogenesis abundant protein 19 (OsLEA19) (Late embryogenesis abundant protein, group 3) (LEA-3) (OsLEA3-1) P0C5A4 LEA19_ORYSJ LEA19 LEA LEA3 LEA3-1 Os05g0542500 LOC_Os05g46480 OJ1288_A07.1 OJ1362_G11.19 FUNCTION: Involved in response to stress. {ECO:0000250|UniProtKB:A2Y720}. ENOG411E49Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0555100 protein,Os07g0555400 protein (Fragment) Q69S50,A0A0P0X7X5 Q69S50_ORYSJ,A0A0P0X7X5_ORYSJ Os07g0555100 Os07g0555100 OSJNBa0058I18.5 OSNPB_070555100 P0013G11.40,Os07g0555400 OSNPB_070555400 ENOG411E49R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 Os09g0421600 protein (Fragment) A0A0P0XN80 A0A0P0XN80_ORYSJ Os09g0421600 OSNPB_090421600 ENOG411E49S Q6NPE9 Q6NPE9_ARATH At4g33690 (G patch domain protein) 28684 At4g33690 (G patch domain protein) chloroplast [GO:0009507] locus:2134263; AT4G33690 NA Os07g0213400 protein,Os08g0192200 protein Q7XIH0,A0A0P0XCQ9 Q7XIH0_ORYSJ,A0A0P0XCQ9_ORYSJ OJ1116_C08.104 Os07g0213400 OSNPB_070213400,Os08g0192200 OSNPB_080192200 ENOG411E49X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os09g0572700 protein (cDNA clone:001-121-D10, full insert sequence),Os09g0572700 protein (Fragment) Q0IZF1,A0A0P0XQT7 Q0IZF1_ORYSJ,A0A0P0XQT7_ORYSJ Os09g0572700 Os09g0572700 OsJ_30441 OSNPB_090572700,Os09g0572700 OSNPB_090572700 ENOG411E49Y HINT4 Q84VV6,A0A1P8B7J6 HINT4_ARATH,A0A1P8B7J6_ARATH Bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4 (APS phosphorylase) (EC 2.7.7.5) (EC 3.6.2.1) (5'-adenylyl sulfate phosphorylase HINT4) (Adenylylsulfate:phosphate adenylyltransferase HINT4) (Histidine triad nucleotide-binding protein 4),Histidine triad nucleotide-binding 4 FUNCTION: Possesses adenylylsulfatase activity in vitro, releasing AMP and sulfate from adenylyl sulfate. Possesses also adenosine 5'-phosphosulfate (APS) phosphorylase activity in vitro. Catalyzes the phosphorolysis of APS, leading to ADP and sulfate. {ECO:0000269|PubMed:19896942}. 2.7.7.5; 2.7.7.5; 3.6.2.1 16798,19864 Bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4 (APS phosphorylase) (EC 2.7.7.5) (EC 3.6.2.1) (5'-adenylyl sulfate phosphorylase HINT4) (Adenylylsulfate:phosphate adenylyltransferase HINT4) (Histidine triad nucleotide-binding protein 4),Histidine triad nucleotide-binding 4 peroxisome [GO:0005777]; adenylylsulfatase activity [GO:0047627]; nucleotide binding [GO:0000166]; sulfate adenylyltransferase (ADP) activity [GO:0004780]; purine ribonucleotide metabolic process [GO:0009150]; sulfur compound metabolic process [GO:0006790],catalytic activity [GO:0003824] locus:505006484; AT4G16566 histidine triad Os04g0535400 protein Q0JBF2 Q0JBF2_ORYSJ Os04g0535400 Os04g0535400 OsJ_15597 OSNPB_040535400 ENOG411E49Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain Os11g0255900 protein,Expressed protein (Os11g0254300 protein),Os11g0255000 protein,Os11g0458600 protein Q53L22,Q53LA9,Q53LA7,A0A0P0Y288 Q53L22_ORYSJ,Q53LA9_ORYSJ,Q53LA7_ORYSJ,A0A0P0Y288_ORYSJ Os11g0255900 LOC_Os11g14940 OsJ_21323 OSNPB_110255900,Os11g0254300 LOC_Os11g14780 OSNPB_110254300,Os11g0255000 LOC_Os11g14870 OSNPB_110255000,Os11g0458600 OSNPB_110458600 ENOG411E49D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0570601 protein A0A0P0V485 A0A0P0V485_ORYSJ Os01g0570601 OSNPB_010570601 ENOG411E49E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os12g0591600 protein Q0IM76 Q0IM76_ORYSJ Os12g0591600 Os12g0591600 OSNPB_120591600 ENOG411E49F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain DnaJ protein-like (Os02g0693200 protein) (cDNA clone:J023100A17, full insert sequence),Os02g0693200 protein (Fragment) Q6Z899,A0A0P0VN70 Q6Z899_ORYSJ,A0A0P0VN70_ORYSJ Os02g0693200 Os02g0693200 OJ1148_D05.25 OsJ_08001 OSNPB_020693200 P0017H11.13,Os02g0693200 OSNPB_020693200 ENOG411E49G A0A1I9LTU3 A0A1I9LTU3_ARATH Serine/Threonine-kinase ATM 93559 Serine/Threonine-kinase ATM kinase activity [GO:0016301] PWWP domain NA NA NA NA NA NA NA ENOG411E49A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oleosin 16 kDa-like Os05g0576700 protein (cDNA clone:001-118-B08, full insert sequence) (cDNA clone:002-142-E02, full insert sequence) Q6L5F8 Q6L5F8_ORYSJ Os05g0576700 Os05g0576700 OJ1126_B10.4 OSNPB_050576700 ENOG411E49B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0528000 protein A0A0P0VJT9 A0A0P0VJT9_ORYSJ Os02g0528000 OSNPB_020528000 ENOG411E49C RPS20 Q9ASV6 RR20_ARATH 30S ribosomal protein S20, chloroplastic DISRUPTION PHENOTYPE: Embryonic lethality. Embryo development arrested at the globular stage. {ECO:0000269|PubMed:22900828}. FUNCTION: Binds directly to 16S ribosomal RNA. {ECO:0000250}. 21826 30S ribosomal protein S20, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2083661; AT3G15190 Ribosomal protein S20 Os01g0678600 protein (cDNA clone:001-110-B01, full insert sequence) (cDNA clone:J013153D21, full insert sequence),Os01g0678600 protein (Fragment),Os01g0678600 protein Q0JKF5,A0A0P0V6J4,A0A0P0V6H4 Q0JKF5_ORYSJ,A0A0P0V6J4_ORYSJ,A0A0P0V6H4_ORYSJ Os01g0678600 Os01g0678600 OsJ_03005 OSNPB_010678600,Os01g0678600 OSNPB_010678600 ENOG411E49M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin family NA NA NA NA NA NA NA ENOG411E49N O80614,Q9XI67,Q9LQX2 O80614_ARATH,Q9XI67_ARATH,Q9LQX2_ARATH RING/U-box superfamily protein (Uncharacterized protein At2g03000),At1g14200 (F7A19.29 protein) (RING/U-box superfamily protein) (Uncharacterized protein At1g14200),At1g26800/T24P13_21 (RING/U-box superfamily protein) (T24P13.19) FUNCTION: E3 ubiquitin-protein ligase involved in protein quality control (PQC) under proteotoxic stress. Is essential to plant survival under proteotoxic stress. Functions by removing damaged proteins before they form cytotoxic aggregates. Recognizes misfolded proteins selectively and tethers polyubiquitin chains to the proteins directly for subsequent degradation by the 26S proteasome pathway. Targets misfolded proteins independently of cytoplasmic chaperones. Associates with the 26S proteasome and sustains the structural integrity of the proteasome complex at the initial stage of proteotoxic stress. Under normal conditions, MPSR1 becomes highly unstable by its autoubiquitination activity and is stabilized during proteotoxic stress by conjugating ubiquitins on misfolded proteins. {ECO:0000269|PubMed:29087340}. R-ATH-983168; 59365,20032,22735 RING/U-box superfamily protein (Uncharacterized protein At2g03000),At1g14200 (F7A19.29 protein) (RING/U-box superfamily protein) (Uncharacterized protein At1g14200),At1g26800/T24P13_21 (RING/U-box superfamily protein) (T24P13.19) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2056765;,locus:2035843;,locus:2200610; AT2G03000,AT1G14200,AT1G26800 zinc finger NA NA NA NA NA NA NA ENOG411E49H Q6NML8,Q9T0L6 Q6NML8_ARATH,Q9T0L6_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (At4g13450),Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein AT4g13450) 17816,23157 Adenine nucleotide alpha hydrolases-like superfamily protein (At4g13450),Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein AT4g13450) hydrolase activity [GO:0016787] locus:2142130; AT4G13450 Universal stress protein Os10g0463300 protein (Universal stress protein family protein, expressed) (cDNA clone:002-156-B07, full insert sequence) Q8H907 Q8H907_ORYSJ LOC_Os10g32590 Os10g0463300 OsJ_31807 OSJNBa0071K18.8 OSNPB_100463300 ENOG411E49I Q9SMR5 Q9SMR5_ARATH At4g39880 (Ribosomal protein L23/L15e family protein) (Uncharacterized protein AT4g39880) (Uncharacterized protein T5J17.50) 19852 At4g39880 (Ribosomal protein L23/L15e family protein) (Uncharacterized protein AT4g39880) (Uncharacterized protein T5J17.50) mitochondrial large ribosomal subunit [GO:0005762]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543] locus:2140030; AT4G39880 Ribosomal protein L23 Os07g0415200 protein (cDNA clone:006-211-D04, full insert sequence),Os03g0388366 protein (Fragment) Q7EYV4,A0A0P0VZ26 Q7EYV4_ORYSJ,A0A0P0VZ26_ORYSJ Os07g0415200 Os07g0415200 OsJ_23959 OSJNBa0077F02.131 OSNPB_070415200,Os03g0388366 OSNPB_030388366 ENOG411E49J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin domain-containing protein NA NA NA NA NA NA NA ENOG411E49K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411E494 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein Os01g0303800 protein (Putative ER6 protein) (cDNA clone:006-306-C04, full insert sequence),Os05g0357525 protein Q657H4,A0A0P0WLA7 Q657H4_ORYSJ,A0A0P0WLA7_ORYSJ Os01g0303800 Os01g0303800 B1146F03.43 OsJ_01453 OSNPB_010303800 P0475H04.10,Os05g0357525 OSNPB_050357525 ENOG411E495 SCO2 Q93YN0 SCO2_ARATH Protein disulfide-isomerase SCO2 (EC 5.3.4.1) (Protein SNOWY COTYLEDON 2) DISRUPTION PHENOTYPE: Albino cotyledons but normal green true leaves. {ECO:0000269|PubMed:17921316, ECO:0000269|PubMed:18209955}. Albino cotyledons abnormal chloroplast biogenesis. True leaves are not affected chloroplast development during embryo biogenesis is not affected. Affected in photomorphogenesis after prolonged skotomorphogenesis (after 4 days in dark unable to undergo photomorphogenesis). Seedling lethal; Albino cotyledons-K. Takamiya-2007 FUNCTION: Protein disulfide-isomerase involved in chloroplast development in cotyledons. Involved in the process of vesicle-derived thylakoid formation, probably at the level of the integration and folding of LHCB proteins at the initial location of integration. Acts only in germinating seeds after dormancy, during the transition from heterotrophic to autotrophic growth. {ECO:0000269|PubMed:17921316, ECO:0000269|PubMed:18209955, ECO:0000269|PubMed:22040291}. MISCELLANEOUS: Its sequence is related to the DnaJ family but lacks the J domain. The CR-type-like region is similar to CR-type zinc-fingers. 5.3.4.1; 5.3.4.1 20843 Protein disulfide-isomerase SCO2 (EC 5.3.4.1) (Protein SNOWY COTYLEDON 2) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; metal ion binding [GO:0046872]; protein disulfide isomerase activity [GO:0003756]; protein self-association [GO:0043621]; chloroplast organization [GO:0009658] DEVELOPMENTAL STAGE: Very low expression in etiolated seedlings, but gradual increase upon illumination with a maximum after 6 hours. Expressed mainly in young plants grown under light conditions. {ECO:0000269|PubMed:17921316}. TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, inflorescences and young siliques of light-grown plants, but not in etiolated seedlings or in senescing tissues. {ECO:0000269|PubMed:18209955}. locus:2094093; AT3G19220 NA Os09g0458400 protein (cDNA clone:J023039M22, full insert sequence),Os09g0458400 protein (cDNA clone:J013057C16, full insert sequence) Q67TZ5,B7F5R8 Q67TZ5_ORYSJ,B7F5R8_ORYSJ B1045B05.19-1 Os09g0458400 OsJ_29636 OSNPB_090458400,Os09g0458400 OSNPB_090458400 ENOG411E496 ENODL8 Q6NLD7 Q6NLD7_ARATH At1g64640 (Early nodulin-like protein 8) 20251 At1g64640 (Early nodulin-like protein 8) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2019414; AT1G64640 Early nodulin-like protein Os03g0115000 protein (Fragment) Q0DVS6 Q0DVS6_ORYSJ Os03g0115000 OSNPB_030115000 ENOG411E497 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SUMO1 sentrin specific peptidase Os12g0606900 protein (Fragment) A0A0P0YC88 A0A0P0YC88_ORYSJ Os12g0606900 OSNPB_120606900 ENOG411E490 BKI1 Q9FMZ0 BKI1_ARATH BRI1 kinase inhibitor 1 FUNCTION: Negative regulator of brassinosteroid signaling. When associated to the membrane, limits the interaction of BRI1 with BAK1 by binding to the kinase-inactive form of BRI1. {ECO:0000269|PubMed:16857903}. MISCELLANEOUS: BRI1 is not required for BKI1 association with the plasma membrane, but the BRI1 kinase activity is necessary for the membrane release. 37104 BRI1 kinase inhibitor 1 cytosol [GO:0005829]; plasma membrane [GO:0005886]; protein heterodimerization activity [GO:0046982]; protein kinase inhibitor activity [GO:0004860]; brassinosteroid mediated signaling pathway [GO:0009742]; lipid metabolic process [GO:0006629]; negative regulation of brassinosteroid biosynthetic process [GO:0010423] TISSUE SPECIFICITY: Expressed in leaves, petioles, shoot apices, hypocotyls, roots and flowers. {ECO:0000269|PubMed:16857903}. locus:2165472; AT5G42750 BRI1 kinase inhibitor NA NA NA NA NA NA NA ENOG411E491 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pfkB family carbohydrate kinase NA NA NA NA NA NA NA ENOG411E492 AHP6,HP6 Q9SSC9,Q104N3,A0A1P8AR55 AHP6_ARATH,Q104N3_ARATH,A0A1P8AR55_ARATH Pseudo histidine-containing phosphotransfer protein 6 (Histidine-containing phosphotransfer protein 6),AHP6a (Histidine phosphotransfer protein 6),Histidine phosphotransfer protein 6 increased number of vascular cell files with intervening procambial and phloem cell files; protoxylem differentiation occurred sporadically along the root,increased number of vascular cell files with intervening procambial and phloem cell files; protoxylem differentiation occurred sporadically along the root Sporadic protoxylem differentiation along the root; No other seedling phenotypes detected; Root growth insensitive to cytokinin-Y. Helariutta-2006 FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction. {ECO:0000250|UniProtKB:Q8L9T7, ECO:0000269|PubMed:12068096}. 17855,15132,18437 Pseudo histidine-containing phosphotransfer protein 6 (Histidine-containing phosphotransfer protein 6),AHP6a (Histidine phosphotransfer protein 6),Histidine phosphotransfer protein 6 cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein histidine kinase binding [GO:0043424]; signal transducer activity [GO:0004871]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; phosphorylation [GO:0016310]; response to cytokinin [GO:0009735]; xylem development [GO:0010089],intracellular [GO:0005622]; signal transducer activity [GO:0004871]; phosphorelay signal transduction system [GO:0000160] locus:2016339; AT1G80100 phosphotransfer protein NA NA NA NA NA NA NA ENOG411E493 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os03g0758500 protein (Plastocyanin-like domain containing protein, expressed) (Putative blue copper-binding protein) (cDNA clone:J033079N03, full insert sequence),Os03g0758500 protein Q9AUW1,A0A0P0W3A8 Q9AUW1_ORYSJ,A0A0P0W3A8_ORYSJ Os03g0758500 LOC_Os03g55120 Os03g0758500 OSJNBa0040E01.2 OSNPB_030758500,Os03g0758500 OSNPB_030758500 ENOG411E498 Q8LC42 Q8LC42_ARATH Uncharacterized protein At1g05430 29862 Uncharacterized protein At1g05430 locus:2201076; AT1G05430 NA NA NA NA NA NA NA NA ENOG411E499 Q9LHH3 Q9LHH3_ARATH FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase, putative) (Stress-enhanced protein 4) (Uncharacterized protein At3g12340) 20149 FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase, putative) (Stress-enhanced protein 4) (Uncharacterized protein At3g12340) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; isomerase activity [GO:0016853]; substrate-specific transmembrane transporter activity [GO:0022891]; transmembrane transport [GO:0055085] locus:1009023300; AT3G12345 Inherit from KOG: peptidylprolyl cistrans isomerase NA NA NA NA NA NA NA ENOG411E0QJ MOJ9.16 Q9FL47 Q9FL47_ARATH Expressed protein (Gb|AAD20416.1) 28386 Expressed protein (Gb|AAD20416.1) locus:2169454; AT5G06990 Protein of unknown function DUF617 Os01g0806400 protein (Fragment) A0A0P0V9J1 A0A0P0V9J1_ORYSJ Os01g0806400 OSNPB_010806400 ENOG411DZGI VIL3,VIN3,VIL2,VEL3 Q5BPT4,Q9FIE3,Q9SUM4,A0A1R7T397,F4IRH5 VIL3_ARATH,VIN3_ARATH,VIL2_ARATH,A0A1R7T397_ARATH,F4IRH5_ARATH VIN3-like protein 3 (Vernalization5/VIN3-like protein 2),Protein VERNALIZATION INSENSITIVE 3,VIN3-like protein 2 (Vernalization5/VIN3-like protein 1),Fibronectin type III domain-containing protein,Vernalization5/VIN3-like protein DISRUPTION PHENOTYPE: Impaired vernalization response with incomplete repression of FLC during and after cold exposure, due to a reduction in vernalization-induced histone H3 deacetylation and methylation (e.g. H3K4me3 and H3K27me3). {ECO:0000269|PubMed:17114575, ECO:0000269|PubMed:17174094}.,DISRUPTION PHENOTYPE: Delayed flowering in short days but not in long days conditions, associated with high expression of MAF5, a floral repressor, due to a reduced H3K9me2 status of MAF5 locus. {ECO:0000269|PubMed:20837520}. Sensitive to hypoxia-E. Finnegan-2009 FUNCTION: Involved in both the vernalization and photoperiod pathways by regulating gene expression. {ECO:0000250}.,FUNCTION: Plays a central role in vernalization by mediating the initial transcriptional repression of the homeotic gene FLC, a floral repressor, after a cold treatment. However, due to its transient expression, it cannot maintain repression of FLC, which is then maintained by Polycomb Group complexes containing VRN2 throughout development. Required to deacetylate histones on the FLC promoter. Together with VIL1, required during vernalization for the modifications of FLC and FLM chromatin that are associated with an epigenetically silenced state (e.g. chromatin modifications, histone deacetylation, and trimethylated H3 'Lys-4' H3K4me3 and 'Lys-27' H3K27me3) and with acquisition of competence to flower. {ECO:0000269|PubMed:14712276, ECO:0000269|PubMed:17114575, ECO:0000269|PubMed:17174094}.,FUNCTION: Maybe involved in both the vernalization and photoperiod pathways by regulating gene expression. Binds preferentially to dimethylated histone H3 'Lys-9' (H3K9me2). Promotes flowering in non-inductive photoperiods (e.g. short days) through the maintenance of the epigenetically repressed state of MAF5 via H3K9me2 and plant homeodomain / polycomb repressive complex 2 (PHD-PRC2)-dependent H3K27me3. {ECO:0000269|PubMed:20837520}. 59834,69347,78770,67145,26988 VIN3-like protein 3 (Vernalization5/VIN3-like protein 2),Protein VERNALIZATION INSENSITIVE 3,VIN3-like protein 2 (Vernalization5/VIN3-like protein 1),Fibronectin type III domain-containing protein,Vernalization5/VIN3-like protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; cellular response to cold [GO:0070417]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351],chromatin silencing complex [GO:0005677]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; cellular response to cold [GO:0070417]; negative regulation of gene expression, epigenetic [GO:0045814]; positive regulation of histone H3-K27 methylation [GO:0061087]; positive regulation of histone H3-K4 methylation [GO:0051571]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; response to hypoxia [GO:0001666]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],chromatin silencing complex [GO:0005677]; PcG protein complex [GO:0031519]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; circadian regulation of gene expression [GO:0032922]; flower development [GO:0009908]; positive regulation of histone H3-K9 dimethylation [GO:1900111]; regulation of short-day photoperiodism, flowering [GO:0048587]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in shoot and root apices. Displays the same pattern of expression as FLC. {ECO:0000269|PubMed:14712276}. locus:2044405;,locus:2173004;,locus:2128946;,locus:2044500; AT2G18880,AT5G57380,AT4G30200,AT2G18870 protein VERNALIZATION INSENSITIVE Os02g0152500 protein (Putative coiled-coil protein) (cDNA clone:J033034J20, full insert sequence) Q67IU4 Q67IU4_ORYSJ P0463E12.2-1 Os02g0152500 OsJ_05408 OSJNBa0050G13.34-1 OSNPB_020152500 ENOG411DZGB P0C896 PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial 63838 Pentatricopeptide repeat-containing protein At3g02650, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2076859; AT3G02650 Pentatricopeptide repeat-containing protein At3g02650 Os01g0897500 protein (Fragment) Q0JGX6,A0A0P0VBK6 Q0JGX6_ORYSJ,A0A0P0VBK6_ORYSJ Os01g0897500 Os01g0897500 OSNPB_010897500,Os01g0897500 OSNPB_010897500 ENOG411ECE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated NA NA NA NA NA NA NA ENOG411ECE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os03g0731050 protein (Fragment) A0A0P0W2L2 A0A0P0W2L2_ORYSJ Os03g0731050 OSNPB_030731050 ENOG411ECE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411ECE2 T22P22_220 Q9LYE8 Q9LYE8_ARATH Plant self-incompatibility protein S1 family (Uncharacterized protein T22P22_220) 19874 Plant self-incompatibility protein S1 family (Uncharacterized protein T22P22_220) locus:2181970; AT5G11830 Has 12 Blast hits to 11 proteins in 1 species Archae - 0 NA NA NA NA NA NA NA ENOG411E1MJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Involved in the biosynthesis of jasmonic acid a growth regulator that is implicated also as a signaling molecule in plant defense. Converts 13-hydroperoxylinolenic acid to 1213- epoxylinolenic acid (By similarity) Allene oxide synthase 4 (EC 4.2.1.92) (Cytochrome P450 74A4) (Hydroperoxide dehydrase 4),Allene oxide synthase 3 (EC 4.2.1.92) (Cytochrome P450 74A3) (Hydroperoxide dehydrase 3) Q6Z6K9,Q6Z6L1 C74A4_ORYSJ,C74A3_ORYSJ CYP74A4 AOS4 Os02g0218800 LOC_Os02g12690 P0027A02.15,CYP74A3 AOS3 Os02g0218700 LOC_Os02g12680 P0027A02.12 FUNCTION: Involved in the biosynthesis of jasmonic acid, a growth regulator that is implicated also as a signaling molecule in plant defense. Converts 13-hydroperoxylinolenic acid to 12,13-epoxylinolenic acid (By similarity). {ECO:0000250}. ENOG411ECE0 CYP708A2,''cytochrome P450,CYP708A1,CYP708A3 Q8L7D5,Q8VZC2,F4I3H7,F4K051,A0A1P8AVV5,A0A1P8ANF5 THAH_ARATH,Q8VZC2_ARATH,F4I3H7_ARATH,F4K051_ARATH,A0A1P8AVV5_ARATH,A0A1P8ANF5_ARATH Cytochrome P450 708A2 (EC 1.14.-.-) (Thalianol hydroxylase) (AtTHAH),At1g78490 (Cytochrome P450, family 708, subfamily A, polypeptide 3) (Similar to cytochrome P450),Cytochrome P450 family protein,Cytochrome P450, family 708, subfamily A, polypeptide 2,Cytochrome P450, family 708, subfamily A, polypeptide 3 DISRUPTION PHENOTYPE: Increased levels of thalianol in roots. {ECO:0000269|PubMed:18356490}. thah1-1 mutants have an elevated accumulation of thalianol and longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. However these mutants do not seem to have higher susceptibility to Atlernaria brassicicola or Pseudomonas syringae pv. tomato DC3000 based on assays performed on seedling roots.,thah1-2 mutants have elevated levels of thalianol in their root extracts when compared to wild type plants. Elevated thalianol levels; No other phenotypes mentioned-A. Osbourn-2008 FUNCTION: Hydroxylates thalianol into thalian-diol. {ECO:0000269|PubMed:18356490}. MISCELLANEOUS: Constitutes with three contiguous genes an operon-like gene cluster that is involved in the thalianol pathway. ARA:AT1G78490-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.-.- 54092,54995,53719,58877,58051,47250 Cytochrome P450 708A2 (EC 1.14.-.-) (Thalianol hydroxylase) (AtTHAH),At1g78490 (Cytochrome P450, family 708, subfamily A, polypeptide 3) (Similar to cytochrome P450),Cytochrome P450 family protein,Cytochrome P450, family 708, subfamily A, polypeptide 2,Cytochrome P450, family 708, subfamily A, polypeptide 3 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; sterol metabolic process [GO:0016125],endoplasmic reticulum [GO:0005783]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; thalianol hydroxylase activity [GO:0080014]; root development [GO:0048364]; thalianol metabolic process [GO:0080003],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Expressed primarily in the root epidermis. {ECO:0000269|PubMed:18356490}. locus:2202970;,locus:2012055;,locus:2162662; AT5G48000,AT1G78490,AT1G55940 cyp708a3 NA NA NA NA NA NA NA ENOG411ECE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chalcone and stilbene synthases N-terminal domain NA NA NA NA NA NA NA ENOG411ECEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acidPPc NA NA NA NA NA NA NA ENOG411ECEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411ECET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase N-terminal domain Os08g0167800 protein,Os08g0168000 protein,Os08g0168400 protein A0A0P0XC15,A0A0P0XCC9,A0A0P0XCB8 A0A0P0XC15_ORYSJ,A0A0P0XCC9_ORYSJ,A0A0P0XCB8_ORYSJ Os08g0167800 OSNPB_080167800,Os08g0168000 OSNPB_080168000,Os08g0168400 OSNPB_080168400 ENOG411ECEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain MutT-like protein (Os07g0212300 protein) (cDNA clone:002-127-B08, full insert sequence),Os03g0810300 protein (Putative NUDIX hydrolase) Q8H4U7,Q6ATR3 Q8H4U7_ORYSJ,Q6ATR3_ORYSJ OJ1664_D08.108 Os07g0212300 OsJ_23542 OSJNBb0042J07.15 OSNPB_070212300,OSJNBa0028F23.8 Os03g0810300 OSNPB_030810300 ENOG411ECEX Q9ZVY4,A0A1P8ANS4 Q9ZVY4_ARATH,A0A1P8ANS4_ARATH T25N20.19,Uncharacterized protein 41795,29687 T25N20.19,Uncharacterized protein locus:2201071; AT1G05540 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411ECEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECEF MYB97,MYB120 Q9S773,Q94FL7 MYB97_ARATH,MY120_ARATH Transcription factor MYB97 (Myb-related protein 97) (AtMYB97),Transcription factor MYB120 (Myb-related protein 120) (AtMYB120) DISRUPTION PHENOTYPE: The triple mutant myb97 myb101 myb120 is impaired in pollen tube growth arrest and subsequent sperm cell release in the female gametophyte thus leading to a drastically reduced fertility. Altered pollen tube-specific gene expression. {ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.,DISRUPTION PHENOTYPE: Disrupted pollen tube growth (PubMed:19714218). The triple mutant myb97 myb101 myb120 is impaired in pollen tube growth arrest and subsequent sperm cell release in the female gametophyte thus leading to a drastically reduced fertility. Altered pollen tube-specific gene expression (PubMed:23791732, PubMed:24278028). {ECO:0000269|PubMed:19714218, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. FUNCTION: Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.,FUNCTION: Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. 43578,58217 Transcription factor MYB97 (Myb-related protein 97) (AtMYB97),Transcription factor MYB120 (Myb-related protein 120) (AtMYB120) nucleus [GO:0005634]; pollen tube [GO:0090406]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; pollen sperm cell differentiation [GO:0048235]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of gene expression [GO:0010468]; regulation of pollen tube growth [GO:0080092]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; pollen tube [GO:0090406]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; pollen sperm cell differentiation [GO:0048235]; pollen tube growth [GO:0009860]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of gene expression [GO:0010468]; regulation of pollen tube growth [GO:0080092]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates in the pollen tube nucleus during pollen tube growth through the pistil. {ECO:0000269|PubMed:23791732}. TISSUE SPECIFICITY: Accumulates in pollen grains and pollen tube (PubMed:14500793, PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:14500793, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.,TISSUE SPECIFICITY: Expressed in pollen grains and pollen tube (PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. locus:2116447;,locus:2151938; AT4G26930,AT5G55020 myb domain protein NA NA NA NA NA NA NA ENOG411ECEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411ECED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411ECEN Q9M1J0 U496O_ARATH UPF0496 protein At3g57100 40994 UPF0496 protein At3g57100 integral component of membrane [GO:0016021] locus:2080670; AT3G57100 Protein of unknown function (DUF677) NA NA NA NA NA NA NA ENOG411ECEI EXO70H5 F4IIS8 F4IIS8_ARATH Exocyst subunit exo70 family protein H5 R-ATH-5620916; 68753 Exocyst subunit exo70 family protein H5 exocyst [GO:0000145]; pollen tube [GO:0090406]; exocytosis [GO:0006887] locus:2065489; AT2G28640 exocyst subunit EXO70 family protein H5 NA NA NA NA NA NA NA ENOG411DZJ3 GEX3 Q9LFS2 GEX3_ARATH Protein GAMETE EXPRESSED 3 Female gametophyte defective-S. McCormick-2008 FUNCTION: Required for micropylar pollen tube guidance. Plays a role during early embryo patterning. {ECO:0000269|PubMed:19825564}. 73340 Protein GAMETE EXPRESSED 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; embryo development ending in seed dormancy [GO:0009793]; pollen tube guidance [GO:0010183] TISSUE SPECIFICITY: Expressed in mature siliques and in pollen, mainly in the sperm cells. Detected in the egg cell within the female gametophyte. {ECO:0000269|PubMed:19825564}. locus:2146122; AT5G16020 NA Os01g0605400 protein A0A0P0V510 A0A0P0V510_ORYSJ Os01g0605400 OSNPB_010605400 ENOG411DZJ8 O82294 O82294_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Similar to harpin-induced protein hin1 from tobacco) 26825 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Similar to harpin-induced protein hin1 from tobacco) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] locus:2062410; AT2G35460 Late embryogenesis abundant protein Os01g0864300 protein (cDNA clone:001-119-B02, full insert sequence) Q0JHH0 Q0JHH0_ORYSJ Os01g0864300 Os01g0864300 OSNPB_010864300 ENOG411DZJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0286850 protein A0A0P0VHQ8 A0A0P0VHQ8_ORYSJ Os02g0286850 OSNPB_020286850 ENOG411DZJS MWD22.10 Q9LU58 Q9LU58_ARATH Ankyrin repeat family protein (At5g51160) (Gb|AAF43949.1) (Uncharacterized protein At5g51160) 48864 Ankyrin repeat family protein (At5g51160) (Gb|AAF43949.1) (Uncharacterized protein At5g51160) integral component of membrane [GO:0016021]; membrane [GO:0016020]; signal transduction [GO:0007165] locus:2176252; AT5G51160 Ankyrin repeat-containing protein NA NA NA NA NA NA NA ENOG411DZJW Q94CK8,Q1PDX4 Q94CK8_ARATH,Q1PDX4_ARATH DUF4228 domain protein (Uncharacterized protein At5g12340),DUF4228 domain protein 25106,25479 DUF4228 domain protein (Uncharacterized protein At5g12340),DUF4228 domain protein locus:505006602; AT5G12340 Inherit from euNOG: expressed protein Os05g0385400 protein (cDNA clone:002-154-A02, full insert sequence),Os03g0356526 protein Q6AV06,A0A0P0VYH1 Q6AV06_ORYSJ,A0A0P0VYH1_ORYSJ Os05g0385400 OJ1286_E05.5 OJ1354_D07.15 OSNPB_050385400,Os03g0356526 OSNPB_030356526 ENOG411E0Q1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein Q69SA4 Q69SA4_ORYSJ Os07g0524900 Os07g0524900 OsJ_24508 OSJNBb0052O11.114 OSNPB_070524900 P0678G09.6 ENOG411E0Q8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF702) Os09g0531600 protein (Putative LRP1) (cDNA, clone: J065137A19, full insert sequence) Q652K4 Q652K4_ORYSJ Os09g0531600 OJ1254_E07.16 OSNPB_090531600 P0515E01.1 ENOG411DZG5 Q9SKU8 Q9SKU8_ARATH At2g20690/F5H14.34 (Lumazine-binding family protein) (Putative riboflavin synthase alpha chain) ARA:AT2G20690-MONOMER;MetaCyc:AT2G20690-MONOMER; 29639 At2g20690/F5H14.34 (Lumazine-binding family protein) (Putative riboflavin synthase alpha chain) chloroplast [GO:0009507]; oxidoreductase activity [GO:0016491]; riboflavin synthase activity [GO:0004746]; riboflavin biosynthetic process [GO:0009231] locus:2051394; AT2G20690 Riboflavin synthase Os12g0541000 protein (cDNA, clone: J100073N23, full insert sequence) B7FAH8 B7FAH8_ORYSJ Os12g0541000 OsJ_36388 OSNPB_120541000 ENOG411EGEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411E0PS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Loricrin-like protein (Os02g0575700 protein) (cDNA clone:001-202-D10, full insert sequence),Os04g0458200 protein (Fragment) Q69JW8,A0A0N7KJ61,A0A0P0WAY1 Q69JW8_ORYSJ,A0A0N7KJ61_ORYSJ,A0A0P0WAY1_ORYSJ Os02g0575700 Os02g0575700 B1342F01.2 OsJ_07240 OSNPB_020575700 P0703B01.23,Os04g0458200 OSNPB_040458200 ENOG411E0PR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os02g0536400 protein (cDNA clone:J023106N09, full insert sequence),Os02g0536400 protein (Fragment) Q6EU58,A0A0P0VK17 Q6EU58_ORYSJ,A0A0P0VK17_ORYSJ Os02g0536400 OJ1112_G07.30 OsJ_07030 OSNPB_020536400,Os02g0536400 OSNPB_020536400 ENOG411E0PQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os06g0706400 protein,Os06g0705700 protein (Putative LeOPT1),Os06g0706100 protein,Os06g0705600 protein,Os03g0669750 protein C7J4D2,Q5Z8U7,A0A0P0X0M0,A0A0P0X150,A0A0P0W1A7 C7J4D2_ORYSJ,Q5Z8U7_ORYSJ,A0A0P0X0M0_ORYSJ,A0A0P0X150_ORYSJ,A0A0P0W1A7_ORYSJ Os06g0706400 Os06g0706400 OSNPB_060706400,Os06g0705700 Os06g0705700 OSNPB_060705700 P0018H04.18 P0621D05.6,Os06g0706100 OSNPB_060706100,Os06g0705600 OSNPB_060705600,Os03g0669750 OSNPB_030669750 ENOG411E0PY LDOX Q96323,O82737,F4JMN7 LDOX_ARATH,O82737_ARATH,F4JMN7_ARATH Leucoanthocyanidin dioxygenase (LDOX) (Leucocyanidin oxygenase) (EC 1.14.11.19) (Anthocyanidin synthase) (ANS) (Leucoanthocyanidin hydroxylase) (Protein TANNIN DEFICIENT SEED 4) (TDS4) (Protein TRANSPARENT TESTA 11) (TT11) (Protein TRANSPARENT TESTA 17) (TT17) (Protein TRANSPARENT TESTA 18) (TT18),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Anthocyanidin synthase-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein DISRUPTION PHENOTYPE: No accumulation of anthocyanins, accumulation of protoanthocyanidin intermediates and presence of numerous small vacuoles in leaf epidermal cells. {ECO:0000269|PubMed:12940955, ECO:0000269|PubMed:19433090, ECO:0000269|PubMed:21683773}. FUNCTION: Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins. Possesses low flavonol synthase activity in vitro towards dihydrokaempferol and dihydroquercetin producing kaempferol and quercitin, respectively. {ECO:0000269|PubMed:12940955, ECO:0000269|PubMed:16106293, ECO:0000269|PubMed:16153644, ECO:0000269|PubMed:19433090, ECO:0000269|PubMed:21683773}. PATHWAY: Pigment biosynthesis; anthocyanin biosynthesis. ARA:AT4G22880-MONOMER;MetaCyc:AT4G22880-MONOMER;,ARA:AT4G22870-MONOMER; 1.14.11.19 40396,12770,17583 Leucoanthocyanidin dioxygenase (LDOX) (Leucocyanidin oxygenase) (EC 1.14.11.19) (Anthocyanidin synthase) (ANS) (Leucoanthocyanidin hydroxylase) (Protein TANNIN DEFICIENT SEED 4) (TDS4) (Protein TRANSPARENT TESTA 11) (TT11) (Protein TRANSPARENT TESTA 17) (TT17) (Protein TRANSPARENT TESTA 18) (TT18),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Anthocyanidin synthase-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein L-ascorbic acid binding [GO:0031418]; leucocyanidin oxygenase activity [GO:0050589]; metal ion binding [GO:0046872]; anthocyanin-containing compound biosynthetic process [GO:0009718]; proanthocyanidin biosynthetic process [GO:0010023]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; vacuole organization [GO:0007033],oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in young seedlings (at protein level). {ECO:0000269|PubMed:10394944}. locus:2127218;,locus:2127208; AT4G22880,AT4G22870 anthocyanidin synthase Leucoanthocyanidin dioxygenase 1 (LDOX1) (Leucocyanidin oxygenase 1) (EC 1.14.20.4) (Anthocyanidin synthase) (OsANS) (Anthocyanidin synthase 1) (OsANS1) (Leucoanthocyanidin hydroxylase 1),Leucoanthocyanidin dioxygenase 2 (LDOX2) (Leucocyanidin oxygenase 2) (EC 1.14.20.4) (Anthocyanidin synthase 2) (OsANS2) (Leucoanthocyanidin hydroxylase 2) Q93VC3,Q67VR7 ANS1_ORYSJ,ANS2_ORYSJ ANS1 ANS Os01g0372500 LOC_Os01g27490 B1039D07.24 B1045D11.2,ANS2 Os06g0626700 LOC_Os06g42130 OSJNBa0072A21.33 P0530H05.4 FUNCTION: Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins. {ECO:0000305|PubMed:18726614}.,FUNCTION: Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins. {ECO:0000250|UniProtKB:Q93VC3}. ENOG411E0PA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain NA NA NA NA NA NA NA ENOG411EGEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF88 NA NA NA NA NA NA NA ENOG411EGED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF718) NA NA NA NA NA NA NA ENOG411DPWJ NIA1,NIA2 P11832,P11035 NIA1_ARATH,NIA2_ARATH Nitrate reductase [NADH] 1 (NR1) (EC 1.7.1.1),Nitrate reductase [NADH] 2 (NR2) (EC 1.7.1.1) ABA inhibits stomatal opening in nia1 nia2 as in the wild type revealing that not all stomatal responses to ABA are reduced.,Guard cells do not generate NO in response to H2O2 and are not significantly different to untreated controls.,Nitrite fails to induce stomatal closure in epidermal peels of the double mutant.,No emission of NO (nitric oxide) under condition in which wild-type does. Wounding-induced NO production is however still observed.,Significantly impaired in NO biosynthesis in response to exogenous H2O2 compared to wild-type.,Stomata are far less sensitive to ABA.,Stomatal aperture not affected by treatment with sodium nitroprusside (SNP). Resistant to chlorate-N. Crawford-1991 FUNCTION: Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. MISCELLANEOUS: When mutated confers resistance to the herbicide chlorate. MetaCyc:AT1G77760-MONOMER;,MetaCyc:AT1G37130-MONOMER; 1.7.1.1; 1.7.1.1 103041,102844 Nitrate reductase [NADH] 1 (NR1) (EC 1.7.1.1),Nitrate reductase [NADH] 2 (NR2) (EC 1.7.1.1) cytosol [GO:0005829]; heme binding [GO:0020037]; molybdenum ion binding [GO:0030151]; molybdopterin cofactor binding [GO:0043546]; nitrate reductase (NADH) activity [GO:0009703]; nitrate reductase (NADPH) activity [GO:0050464]; nitrate reductase activity [GO:0008940]; nitrate assimilation [GO:0042128]; nitric oxide biosynthetic process [GO:0006809]; response to herbicide [GO:0009635]; response to light stimulus [GO:0009416],cytosol [GO:0005829]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; heme binding [GO:0020037]; molybdenum ion binding [GO:0030151]; molybdopterin cofactor binding [GO:0043546]; nitrate reductase (NADH) activity [GO:0009703]; nitrate reductase (NADPH) activity [GO:0050464]; nitrate reductase activity [GO:0008940]; nitrate assimilation [GO:0042128]; nitric oxide biosynthetic process [GO:0006809]; response to herbicide [GO:0009635]; response to light stimulus [GO:0009416]; response to symbiotic fungus [GO:0009610] TISSUE SPECIFICITY: Root, leaf, and shoot. locus:2203221;,locus:2029677; AT1G77760,AT1G37130 Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants fungi and bacteria (By similarity) Nitrate reductase [NADH] 1 (NR1) (EC 1.7.1.1),Nitrate reductase,Os08g0468100 protein (Fragment) P16081,Q6ZHH7,Q6ZC33,A0A0P0XHI7,A0A0P0XGZ0 NIA1_ORYSJ,Q6ZHH7_ORYSJ,Q6ZC33_ORYSJ,A0A0P0XHI7_ORYSJ,A0A0P0XGZ0_ORYSJ NIA1 Os08g0468100 LOC_Os08g36480 OsJ_27622 P0470B03.25,Os02g0770800 Os02g0770800 OJ1353_F08.4 OSNPB_020770800,Os08g0468700 Os08g0468700 OSNPB_080468700 P0470B03.30,Os08g0468100 OSNPB_080468100 FUNCTION: Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.,FUNCTION: Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. {ECO:0000256|PIRNR:PIRNR000233}. ENOG411EBF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease containing protein CAF1 family ribonuclease containing protein (Os10g0420600 protein),CAF1 family ribonuclease containing protein (Os10g0421000 protein),Os10g0421600 protein,Os10g0421666 protein,Os10g0421633 protein,Os10g0421266 protein,Os10g0421700 protein,Os10g0421200 protein Q7XEI7,Q7XEI2,A0A0P0XUS5,A0A0N7KRT3,A0A0P0XU98,A0A0P0XUR5,A0A0P0XUS8,A0A0P0XUX7 Q7XEI7_ORYSJ,Q7XEI2_ORYSJ,A0A0P0XUS5_ORYSJ,A0A0N7KRT3_ORYSJ,A0A0P0XU98_ORYSJ,A0A0P0XUR5_ORYSJ,A0A0P0XUS8_ORYSJ,A0A0P0XUX7_ORYSJ Os10g0420600 LOC_Os10g28450 OsJ_31552 OSNPB_100420600,Os10g0421000 LOC_Os10g28520 OsJ_31554 OSNPB_100421000,Os10g0421600 OSNPB_100421600,Os10g0421666 OSNPB_100421666,Os10g0421633 OSNPB_100421633,Os10g0421266 OSNPB_100421266,Os10g0421700 OSNPB_100421700,Os10g0421200 OSNPB_100421200 ENOG411E682 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E89N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E89T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E89W PCC1,MKA23.16 Q94C26,Q9LHJ3,Q8W472 PCC1_ARATH,Q9LHJ3_ARATH,Q8W472_ARATH Cysteine-rich and transmembrane domain-containing protein PCC1 (Protein PATHOGEN AND CIRCADIAN CONTROLLED 1),Cysteine-rich/transmembrane domain PCC1-like protein (Uncharacterized protein At3g22240),Cysteine-rich TM module stress tolerance protein (Uncharacterized protein At3g22220) (Uncharacterized protein At3g22220; MKA23.16) (Uncharacterized protein At3g22231/MKA23.14) DISRUPTION PHENOTYPE: Late flowering and defective in UV-C light acceleration of flowering. Strong reduction of FLOWERING LOCUS T (FT) expression. Hypersensitivity to abscisic acid (ABA) and alterations in polar lipid contents and their corresponding fatty acids; reduced levels of phosphatidylinositol (PI) and of 18:0, but increased levels of 18:2 and 18:3 polar lipids. Increased susceptibility to the hemi-biotrophic oomycete pathogen Phytophthora brassicae but enhanced resistance to the necrotrophic fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:19781011, ECO:0000269|PubMed:23833195}. FUNCTION: Modulates resistance against pathogens including oomycetes (e.g. Hyaloperonospora parasitica and Phytophthora brassicae) and fungi (e.g. Phytophthora brassicae). Controls the abscisic acid-mediated (ABA) signaling pathways. Regulator of the flowering time in response to stress (e.g. UV-C). Regulates polar lipid content; promotes phosphatidylinositol (PI) and 18:0 but prevents 18:2 and 18:3 polar lipids accumulation. {ECO:0000269|PubMed:14614626, ECO:0000269|PubMed:19781011, ECO:0000269|PubMed:23833195}. 8479,7525,7317 Cysteine-rich and transmembrane domain-containing protein PCC1 (Protein PATHOGEN AND CIRCADIAN CONTROLLED 1),Cysteine-rich/transmembrane domain PCC1-like protein (Uncharacterized protein At3g22240),Cysteine-rich TM module stress tolerance protein (Uncharacterized protein At3g22220) (Uncharacterized protein At3g22220; MKA23.16) (Uncharacterized protein At3g22231/MKA23.14) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to UV-C [GO:0071494]; circadian rhythm [GO:0007623]; defense response [GO:0006952]; lipid homeostasis [GO:0055088]; lipid metabolic process [GO:0006629]; positive regulation of defense response to oomycetes [GO:1902290]; positive regulation of phosphatidylinositol biosynthetic process [GO:0010513]; regulation of defense response to fungus [GO:1900150]; regulation of lipid biosynthetic process [GO:0046890]; regulation of photoperiodism, flowering [GO:2000028]; response to abscisic acid [GO:0009737]; response to bacterium [GO:0009617]; salicylic acid mediated signaling pathway [GO:0009863],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006] DEVELOPMENTAL STAGE: Low expression after germination followed by an abrupt level increase in 10-days old seedlings. Accumulates in senescent leaves. {ECO:0000269|PubMed:19781011}. TISSUE SPECIFICITY: Expressed at very low levels in seedlings and petioles, and at higher levels in leaves. Also present in phloem sap. {ECO:0000269|PubMed:19781011, ECO:0000269|PubMed:22442409}. locus:505006361;,locus:2091623;,locus:1005716535; AT3G22231,AT3G22240,AT3G22235 NA NA NA NA NA NA NA NA ENOG411E68U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) NA NA NA NA NA NA NA ENOG411E890 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HAT NA NA NA NA NA NA NA ENOG411E893 EDA6 Q9LW53 Q9LW53_ARATH Embryo sac development arrest 6 Female gametophyte defective; Embryo defective (inferred)-V. Sundaresan-2005 12050 Embryo sac development arrest 6 embryo development ending in seed dormancy [GO:0009793]; megagametogenesis [GO:0009561] locus:2090895; AT3G23440 NA NA NA NA NA NA NA NA ENOG411E894 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411E897 SAUR65 Q0WPR6,A0A1P8AMQ0 SAU65_ARATH,A0A1P8AMQ0_ARATH Auxin-responsive protein SAUR65 (Protein SMALL AUXIN UP RNA 65),SAUR-like auxin-responsive protein family FUNCTION: May promote auxin-stimulated organ elongation, such as hypocotyls, stamen filaments and petals. {ECO:0000250|UniProtKB:F4I1H5}. 16916,21283 Auxin-responsive protein SAUR65 (Protein SMALL AUXIN UP RNA 65),SAUR-like auxin-responsive protein family plasma membrane [GO:0005886]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of organ growth [GO:0046620],integral component of membrane [GO:0016021]; response to auxin [GO:0009733] locus:2013618; AT1G29460 auxin-responsive protein NA NA NA NA NA NA NA ENOG411EIM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411EIMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMB MJE4.15 Q9FJS3 Q9FJS3_ARATH Glycine-rich protein family 31628 Glycine-rich protein family locus:2165882; AT5G35660 NA NA NA NA NA NA NA NA ENOG411EIME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0846150 protein,Os03g0268750 protein A0A0P0VA94,A0A0P0VW03 A0A0P0VA94_ORYSJ,A0A0P0VW03_ORYSJ Os01g0846150 OSNPB_010846150,Os03g0268750 OSNPB_030268750 ENOG411EIMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0664300 protein),Os11g0662000 protein Q2QZZ7,A0A0P0Y545 Q2QZZ7_ORYSJ,A0A0P0Y545_ORYSJ Os11g0664300 LOC_Os11g44290 OsJ_34748 OSNPB_110664300,Os11g0662000 OSNPB_110662000 ENOG411EIMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase NA NA NA NA NA NA NA ENOG411EIMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inosine-uridine preferring nucleoside hydrolase NA NA NA NA NA NA NA ENOG411EIMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1070) NA NA NA NA NA NA NA ENOG411EIMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) NA NA NA NA NA NA NA ENOG411EIMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DS4B MCA23.5 A8MQW6,Q9FIK6,Q8W580,A8MRG3 A8MQW6_ARATH,Q9FIK6_ARATH,Q8W580_ARATH,A8MRG3_ARATH AT5G47730 protein (Sec14p-like phosphatidylinositol transfer family protein),At5g47730 (Sec14p-like phosphatidylinositol transfer family protein),At1g55840/F14J16_2 (Sec14p-like phosphatidylinositol transfer family protein),Sec14p-like phosphatidylinositol transfer family protein 32327,38861,37000,33850 AT5G47730 protein (Sec14p-like phosphatidylinositol transfer family protein),At5g47730 (Sec14p-like phosphatidylinositol transfer family protein),At1g55840/F14J16_2 (Sec14p-like phosphatidylinositol transfer family protein),Sec14p-like phosphatidylinositol transfer family protein locus:2160892;,locus:2012040; AT5G47730,AT1G55840 CRAL TRIO domain containing protein Os09g0258000 protein (Putative polyphosphoinositide binding protein Ssh1p) (cDNA clone:001-038-G03, full insert sequence) (cDNA clone:006-309-D09, full insert sequence),Os02g0200000 protein (Putative SEC14 cytosolic factor (SEC14)) (cDNA clone:J013130K11, full insert sequence),Os09g0258000 protein,Os06g0607200 protein Q6K407,Q6Z7A1,A0A0P0XKC3,A0A0P0WYN1 Q6K407_ORYSJ,Q6Z7A1_ORYSJ,A0A0P0XKC3_ORYSJ,A0A0P0WYN1_ORYSJ P0523B07.38-1 Os09g0258000 OSNPB_090258000,Os02g0200000 Os02g0200000 OsJ_05787 OSNPB_020200000 P0419A09.7,Os09g0258000 OSNPB_090258000,Os06g0607200 OSNPB_060607200 ENOG411DS4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0191200 protein (Putative pentatricopeptide (PPR) repeat-containing protein),Os06g0705350 protein Q6YUT6,A0A0P0X0Q1 Q6YUT6_ORYSJ,A0A0P0X0Q1_ORYSJ Os02g0191200 Os02g0191200 OSJNBb0031B09.31 OSNPB_020191200 P0453H10.6,Os06g0705350 OSNPB_060705350 ENOG411DS4S SBT6.1,S1P Q0WUG6,A0A1P8BD04 SBT61_ARATH,A0A1P8BD04_ARATH Subtilisin-like protease SBT6.1 (EC 3.4.21.-) (Site-1 protease) (AtS1P) (Subtilase subfamily 6 member 1) (AtSBT6.1),SITE-1 protease DISRUPTION PHENOTYPE: Short root (PubMed:20876872). Mutant plants have increased sensitivity to salt-induced osmotic stress (PubMed:17662035). {ECO:0000269|PubMed:17662035, ECO:0000269|PubMed:20876872}. s1p-3 mutants exhibit a greater inhibition of primary root elongation in response to NaCl KCl LiCl and mannitol than wild-type seedlings. The salt-sensitive phenotype co-segregates with the s1p-3 T-DNA insertion and can be partially rescued by a 35S:S1P construct. s1p-3 mutants do not show the proteolytic processing of a 4xMyc:bZIP17 protein from an 84 kD to a 46-kD protein as observed in wild type seedlings. In addition several salt-responsive transcripts have more than a 2.5-fold lower transcriptional response in s1p-3 mutants than in wild type seedlings. Sensitive to salt, potassium chloride, lithium chloride and mannitol-S. Howell-2007 FUNCTION: Serine protease that catalyzes the first step (site-1 cleavage) in the proteolytic activation of various factors, prior to site-2 cleavage. Part of a regulated intramembrane proteolysis (RIP) cascade. Cleaves BZIP17 and BZIP28 after the Arg-Arg-Ile-Leu (RRIL) motif. May cleave BZIP49 after the RRIL motif. Targets the membrane-associated BZIP17 factor, which functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Cleaves the pectinesterases PME1 after the Arg-Arg-Leu-Met (RRLM) and Arg-Arg-Leu-Leu (RRLL) motifs, and PME5 after the Arg-Arg-Leu-Leu (RRLL) and Arg-Lys-Leu-Met (RKLM) motifs. This processing and C-terminus release occurs in the Golgi apparatus and is required for cell wall targeting of pectinesterases. Thus, SBT6.1 mediates the regulated release of mature pectinesterases from the Golgi (PubMed:19144003). Cleaves the peptide growth factor RALF23 after the Arg-Arg-Ile-Leu (RRIL) motif. This processing is required for RALF23 function in the negative regulation of brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation) (PubMed:19473327). {ECO:0000269|PubMed:17662035, ECO:0000269|PubMed:19144003, ECO:0000269|PubMed:19473327}. 3.4.21.- 116151,89507 Subtilisin-like protease SBT6.1 (EC 3.4.21.-) (Site-1 protease) (AtS1P) (Subtilase subfamily 6 member 1) (AtSBT6.1),SITE-1 protease Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; endopeptidase activity [GO:0004175]; serine-type endopeptidase activity [GO:0004252]; hyperosmotic response [GO:0006972]; hyperosmotic salinity response [GO:0042538]; proteolysis [GO:0006508],integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Expressed in the vasculature of roots, cotyledons and leaves. {ECO:0000269|PubMed:17662035, ECO:0000269|PubMed:20876872}. locus:2183224; AT5G19660 Membrane-bound transcription factor Os06g0163500 protein (cDNA clone:J023090G07, full insert sequence) Q0DEB2 Q0DEB2_ORYSJ Os06g0163500 Os06g0163500 OsJ_20233 OSNPB_060163500 ENOG411DS4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411DS4Q GPDHC1 Q9S785,O22216 GPDH2_ARATH,GPDHC_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] At3g07690, cytosolic (G3Pdh(At3g07690)) (EC 1.1.1.8),Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic (EC 1.1.1.8) DISRUPTION PHENOTYPE: Compromised in systemic acquired resistance (SAR) triggered by Pseudomonas syringae DC3000 avrRpt2 probably because of a reduced accumulation of glycerol-3-phosphate (G3P). {ECO:0000269|PubMed:21441932}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased NADH/NAD(+) ratios, decreased levels of glycerol-3-phosphate, and produce constitutive high levels of reactive oxygen species (ROS). {ECO:0000269|PubMed:16415206}. Increased levels of malate in mutant (close to twice that in wildtype). Significant decrease in citrate levels and oxaloacetate.,Lower germination rates when grown on plates containing ABA and salt.,No aberrant phenotype when grown under normal conditions; except a slightly earlier flowering initiation. Germination and seedling growth sensitive to ABA; Sensitive to salt; Slightly early flowering-J. Zou-2006 FUNCTION: Required for glycerol-3-phosphate (G3P) accumulation during systemic acquired resistance (SAR) establishment. {ECO:0000269|PubMed:21441932}.,FUNCTION: Involved in cell redox homeostasis. Required for maintaining a steady state cellular NADH/NAD(+) ratio through a mitochondrial glycerol-3-phosphate redox shuttle. May function with the mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase SDP6 to shuttle reducing equivalents into the mitochondria for respiration. {ECO:0000269|PubMed:16415206}. ARA:AT3G07690-MONOMER;,ARA:AT2G41540-MONOMER; 1.1.1.8; 1.1.1.8 51396,51491 Glycerol-3-phosphate dehydrogenase [NAD(+)] At3g07690, cytosolic (G3Pdh(At3g07690)) (EC 1.1.1.8),Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic (EC 1.1.1.8) glycerol-3-phosphate dehydrogenase complex [GO:0009331]; glycerol-3-phosphate dehydrogenase [NAD+] activity [GO:0004367]; NAD binding [GO:0051287]; carbohydrate metabolic process [GO:0005975]; glycerol-3-phosphate catabolic process [GO:0046168]; systemic acquired resistance [GO:0009627],cytosol [GO:0005829]; glycerol-3-phosphate dehydrogenase complex [GO:0009331]; glycerol-3-phosphate dehydrogenase [NAD+] activity [GO:0004367]; NAD binding [GO:0051287]; carbohydrate metabolic process [GO:0005975]; glycerol-3-phosphate catabolic process [GO:0046168] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:16415206}. locus:2077387;,locus:2062734; AT3G07690,AT2G41540 Glycerol-3-phosphate dehydrogenase Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic (EC 1.1.1.8) Q8S0G4 GPDH1_ORYSJ Os01g0939600 LOC_Os01g71280 B1150F11.17 OsJ_04716 FUNCTION: May be involved in cell redox homeostasis. {ECO:0000250}. ENOG411EERP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ca2+-ATPase N terminal autoinhibitory domain NA NA NA NA NA NA NA ENOG411EERQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os11g0624400 protein (Fragment),Os11g0624332 protein A0A0P0Y4Q5,A0A0P0Y4H9 A0A0P0Y4Q5_ORYSJ,A0A0P0Y4H9_ORYSJ Os11g0624400 OSNPB_110624400,Os11g0624332 OSNPB_110624332 ENOG411EERR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: May be involved in recombinational repair of damaged DNA (By similarity) NA NA NA NA NA NA NA ENOG411EERS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: YME1-like 1 (S. cerevisiae) Os01g0590700 protein (Fragment),Os01g0590700 protein A0A0P0V4Q1,A0A0P0V4Q4 A0A0P0V4Q1_ORYSJ,A0A0P0V4Q4_ORYSJ Os01g0590700 OSNPB_010590700 ENOG411EERV F4HXU8 F4HXU8_ARATH Nucleic acid-binding, OB-fold-like protein 43578 Nucleic acid-binding, OB-fold-like protein locus:2006847; AT1G14800 CONTAINS InterPro DOMAIN s Nucleic acid-binding OB-fold (InterPro IPR012340) Nucleic acid-binding OB-fold-like (InterPro IPR016027) NA NA NA NA NA NA NA ENOG411EERW P0C2F6,F4K355 RNHX1_ARATH,F4K355_ARATH Putative ribonuclease H protein At1g65750 (EC 3.1.26.4),Polynucleotidyl transferase, ribonuclease H-like superfamily protein 3.1.26.4 70571,29538 Putative ribonuclease H protein At1g65750 (EC 3.1.26.4),Polynucleotidyl transferase, ribonuclease H-like superfamily protein metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523],nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; transferase activity [GO:0016740] locus:504954956; AT1G65750,AT5G42905 RNase H family protein NA NA NA NA NA NA NA ENOG411EERX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EERY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EERZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FR47-like protein NA NA NA NA NA NA NA ENOG411EERA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EERB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flagellar radial spokes contribute to the regulation of dynein arm activity and thus the pattern of flagellar bending. They consist of a thin stalk which is attached to the a subfiber of the outer doublet microtubule and a bulbous head which is attached to the stalk and appears to interact with the projections from the central pair of microtubules NA NA NA NA NA NA NA ENOG411EERC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTP-binding protein LepA C-terminus NA NA NA NA NA NA NA ENOG411EERD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins (By similarity) NA NA NA NA NA NA NA ENOG411EERE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0404900 protein A3BSY9 A3BSY9_ORYSJ Os08g0404900 OsJ_27244 OSNPB_080404900 ENOG411EERF DOF1.6 Q9SX97 DOF16_ARATH Dof zinc finger protein DOF1.6 (AtDOF1.6) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 22293 Dof zinc finger protein DOF1.6 (AtDOF1.6) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:505006172; AT1G47655 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EERG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EERH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411EERI Q0WQJ1 Q0WQJ1_ARATH Uncharacterized protein At5g49170 21432 Uncharacterized protein At5g49170 locus:2155869; AT5G49170 NA NA NA NA NA NA NA NA ENOG411EERJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EERM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ATPase class NA NA NA NA NA NA NA ENOG411EERN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 Os12g0178600 protein,Os12g0178300 protein,Os12g0178250 protein A0A0P0Y7H7,A0A0P0Y7X0,A0A0P0Y859 A0A0P0Y7H7_ORYSJ,A0A0P0Y7X0_ORYSJ,A0A0P0Y859_ORYSJ Os12g0178600 OSNPB_120178600,Os12g0178300 OSNPB_120178300,Os12g0178250 OSNPB_120178250 ENOG411EER0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os01g0553400 protein Q0JLZ9 Q0JLZ9_ORYSJ Os01g0553400 Os01g0553400 OSNPB_010553400 ENOG411EER4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide methionine sulfoxide reductase NA NA NA NA NA NA NA ENOG411EER8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EER9 Q8L855,A0A1P8AME0 Q8L855_ARATH,A0A1P8AME0_ARATH Carbohydrate-binding X8 domain superfamily protein (Uncharacterized protein At1g13830),Carbohydrate-binding X8 domain superfamily protein 20382,22125 Carbohydrate-binding X8 domain superfamily protein (Uncharacterized protein At1g13830),Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:2014829; AT1G13830 X8 domain NA NA NA NA NA NA NA ENOG411EGM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBQ NA NA NA NA NA NA NA ENOG411EGM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGM5 Q3E9A1 Q3E9A1_ARATH Serine-rich protein-like protein 19933 Serine-rich protein-like protein locus:2149189; AT5G20370 NA NA NA NA NA NA NA NA ENOG411EGM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os08g0474000 protein (Fragment) Q0J525 Q0J525_ORYSJ Os08g0474000 Os08g0474000 OSNPB_080474000 ENOG411EGMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein NA NA NA NA NA NA NA ENOG411EGME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ArfGap NA NA NA NA NA NA NA ENOG411EISF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0534400 protein Q5Z5G4 Q5Z5G4_ORYSJ Os06g0534400 OsJ_21570 OSJNBa0001B21.7 OSNPB_060534400 P0506C10.32 ENOG411DVV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVV2 Q9SMQ3 Q9SMQ3_ARATH Myosin heavy chain-related protein (Uncharacterized protein AT4g40020) (Uncharacterized protein T5J17.190) 70024 Myosin heavy chain-related protein (Uncharacterized protein AT4g40020) (Uncharacterized protein T5J17.190) synaptonemal complex [GO:0000795]; reciprocal meiotic recombination [GO:0007131] locus:2140114; AT4G40020 Inherit from euNOG: expressed protein OSJNBa0086B14.10 protein (Os04g0450900 protein) Q7XV45 Q7XV45_ORYSJ Os04g0450900 OSJNBa0086B14.10 OSNPB_040450900 ENOG411DVV3 LIP4 O80522,Q9FXB6,A0A1P8AV23 GDL2_ARATH,LIP4_ARATH,A0A1P8AV23_ARATH GDSL esterase/lipase At1g09390 (EC 3.1.1.-) (Extracellular lipase At1g09390),GDSL esterase/lipase LIP-4 (EC 3.1.1.-) (Extracellular lipase LIP-4),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT1G09390-MONOMER;,ARA:AT1G56670-MONOMER; 3.1.1.- 40477,41576,33039 GDSL esterase/lipase At1g09390 (EC 3.1.1.-) (Extracellular lipase At1g09390),GDSL esterase/lipase LIP-4 (EC 3.1.1.-) (Extracellular lipase LIP-4),GDSL-like Lipase/Acylhydrolase superfamily protein chloroplast stroma [GO:0009570]; extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2012270;,locus:2027594; AT1G09390,AT1G56670 GDSL esterase lipase Os01g0331100 protein (Putative lipase homolog) (cDNA clone:J023146F09, full insert sequence),Os01g0330100 protein (Fragment) Q5ZCY5,C7IWN0 Q5ZCY5_ORYSJ,C7IWN0_ORYSJ Os01g0331100 OSNPB_010331100 P0489E06.19,Os01g0330100 Os01g0330100 OSNPB_010330100 ENOG411DVV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb family transcription Os06g0664900 protein,Myb family transcription factor-like (Os06g0664800 protein) Q655Y5,Q655Y6 Q655Y5_ORYSJ,Q655Y6_ORYSJ Os06g0664900 OsJ_22276 OSNPB_060664900 P0473H04.12,P0473H04.10 Os06g0664800 OSNPB_060664800 ENOG411DVV5 E2FC,ATE2F2 Q9FV70,F4HV47 E2FC_ARATH,F4HV47_ARATH Transcription factor E2FC (E2F transcription factor-2) (AtE2F2),Winged-helix DNA-binding transcription factor family protein FUNCTION: Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}. R-ATH-1538133;R-ATH-68689;R-ATH-68911;R-ATH-69298; 44488,44360 Transcription factor E2FC (E2F transcription factor-2) (AtE2F2),Winged-helix DNA-binding transcription factor family protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell division [GO:0051301]; cell morphogenesis [GO:0000902]; DNA endoreduplication [GO:0042023]; glucosinolate metabolic process [GO:0019760]; negative regulation of cell division [GO:0051782]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected at the G1/S transition, but increases during the progression into S phase and peaks after the passage into G2. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:12468727}. TISSUE SPECIFICITY: Expressed in meristematic areas, vascular tissues, apical part of the roots, cotyledons, upper region of the hypocotyls, trichomes, young flower buds and pollen grains. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782}. locus:2202390; AT1G47870 Transcription factor NA NA NA NA NA NA NA ENOG411DVV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C Os08g0374400 protein A0A0P0XF23 A0A0P0XF23_ORYSJ Os08g0374400 OSNPB_080374400 ENOG411DVV7 SAP11,SAP13 Q8VZ42,Q9SCM4,F4K080 SAP11_ARATH,SAP13_ARATH,F4K080_ARATH Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 (AtSAP11),Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 (AtSAP13),Zinc ion binding protein FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 31252,27760,21418 Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 (AtSAP11),Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 (AtSAP13),Zinc ion binding protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270],zinc ion binding [GO:0008270] locus:504955994;,locus:2103533;,locus:1006230568; AT2G41835,AT3G57480,AT5G48205 Zinc finger AN1 and C2H2 domain-containing stress-associated protein Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 (OsSAP16),C2H2 transcription factor (Os07g0569700 protein) (Fragment) Q0D5B9,F1DK73 SAP16_ORYSJ,F1DK73_ORYSJ SAP16 Os07g0569700 LOC_Os07g38240 OJ1019_E02.22,Os07g0569700 OSNPB_070569700 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411DVVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA galactosyl transferase GMA12/MNN10 family Probable glycosyltransferase 4 (OsGT4) (EC 2.4.-.-) Q10MK2 GT4_ORYSJ GT4 Os03g0305800 LOC_Os03g19310 OsJ_10555 FUNCTION: Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q10MQ0}. ENOG411DVVI CIPK20 Q9FJ54 CIPKK_ARATH CBL-interacting serine/threonine-protein kinase 20 (EC 2.7.11.1) (SNF1-related kinase 3.6) (SOS2-like protein kinase PKS18) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). Required for the abscisic acid-mediated (ABA) signaling pathway involved in seed germination and growth elongation inhibition. {ECO:0000250, ECO:0000269|PubMed:12198122}. 2.7.11.1 50168 CBL-interacting serine/threonine-protein kinase 20 (EC 2.7.11.1) (SNF1-related kinase 3.6) (SOS2-like protein kinase PKS18) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Confined to mature leaves. {ECO:0000269|PubMed:12198122}. locus:2152380; AT5G45820 Cbl-interacting protein kinase CBL-interacting protein kinase 5 (EC 2.7.11.1) (OsCIPK05),Os01g0206700 protein (Fragment) Q9LWM4,A0A0P0UZF3 CIPK5_ORYSJ,A0A0P0UZF3_ORYSJ CIPK5 Os01g0206700 LOC_Os01g10890 OsJ_000797 OSJNBa0016I09.5 P0451C06.36,Os01g0206700 OSNPB_010206700 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DVVJ ALAAT2,ALAAT1 Q9LDV4,F4I7I0 ALAT2_ARATH,ALAT1_ARATH Alanine aminotransferase 2, mitochondrial (AtAlaAT2) (AtAlaATm) (EC 2.6.1.2) (Alanine-2-oxoglutarate aminotransferase 3) (EC 2.6.1.-),Alanine aminotransferase 1, mitochondrial (AtAlaAT1) (AtAlaATc) (EC 2.6.1.2) (Alanine-2-oxoglutarate aminotransferase 4) (EC 2.6.1.-) DISRUPTION PHENOTYPE: Strong overall decrease of alanine aminotransferase activity, especially in roots. {ECO:0000269|PubMed:17319845}. slightly retarded. Leaves contained undegraded starch at the end of night.,plants appear normal under normal growth conditions. When grown on low-nitrogen medium with alanine supplementation the mutant plants showed reduced growth. Elevated alanine levels in roots under hypoxia; Reduced growth with alanine as nitrogen source-A. Good-2007 FUNCTION: Major alanine aminotransferase in roots. {ECO:0000269|PubMed:17319845}. PATHWAY: Photosynthesis; C4 acid pathway.; PATHWAY: Amino-acid degradation; L-alanine degradation via transaminase pathway; pyruvate from L-alanine: step 1/1. R-ATH-70614; 2.6.1.2; 2.6.1.- 59511,59821 Alanine aminotransferase 2, mitochondrial (AtAlaAT2) (AtAlaATm) (EC 2.6.1.2) (Alanine-2-oxoglutarate aminotransferase 3) (EC 2.6.1.-),Alanine aminotransferase 1, mitochondrial (AtAlaAT1) (AtAlaATc) (EC 2.6.1.2) (Alanine-2-oxoglutarate aminotransferase 4) (EC 2.6.1.-) mitochondrion [GO:0005739]; L-alanine:2-oxoglutarate aminotransferase activity [GO:0004021]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; L-alanine catabolic process [GO:0042853]; response to hypoxia [GO:0001666],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; L-alanine:2-oxoglutarate aminotransferase activity [GO:0004021]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; L-alanine catabolic process, by transamination [GO:0019481]; response to cadmium ion [GO:0046686]; response to hypoxia [GO:0001666] TISSUE SPECIFICITY: Expressed in shoots, essentially in leaves and flowers, mostly in vascular tissues. Also detected in stems and roots. {ECO:0000269|PubMed:12631323, ECO:0000269|PubMed:17319845}.,TISSUE SPECIFICITY: Mostly expressed in roots and shoots, mostly in vascular tissues, and, to a lower extent, in flowers and leaves. {ECO:0000269|PubMed:12631323, ECO:0000269|PubMed:17319845}. locus:2195808; AT1G72330,AT1G17290 alanine aminotransferase Os07g0617800 protein,Os10g0390500 protein (Fragment),Os03g0183600 protein (Fragment) Q0D4M5,A0A0P0XU67,A0A0P0VTZ7,A0A0P0XUE4 Q0D4M5_ORYSJ,A0A0P0XU67_ORYSJ,A0A0P0VTZ7_ORYSJ,A0A0P0XUE4_ORYSJ Os07g0617800 Os07g0617800 OSNPB_070617800,Os10g0390500 OSNPB_100390500,Os03g0183600 OSNPB_030183600 ENOG411DVVK SIA1,MGP2 Q8VZJ0,A0A1P8AM36,F4HXN8 SIA1_ARATH,A0A1P8AM36_ARATH,F4HXN8_ARATH Sialyltransferase-like protein 1 (EC 2.4.-.-) (Protein MALE GAMETOPHYTE DEFECTIVE 2),MALE GAMETOPHYTE DEFECTIVE 2 DISRUPTION PHENOTYPE: Inhibition of pollen germination and retarded pollen tube growth. {ECO:0000269|PubMed:20738727}. Complete male gametophyte defective-D. Ye-2010 FUNCTION: Required for normal pollen grain germination and pollen tube growth. May not be required for pollen development and female gametophytic function. {ECO:0000269|PubMed:20738727}. 2.4.-.- 54216,33824,39618 Sialyltransferase-like protein 1 (EC 2.4.-.-) (Protein MALE GAMETOPHYTE DEFECTIVE 2),MALE GAMETOPHYTE DEFECTIVE 2 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; sialyltransferase activity [GO:0008373]; oligosaccharide metabolic process [GO:0009311]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; protein N-linked glycosylation via asparagine [GO:0018279]; sialylation [GO:0097503],sialyltransferase activity [GO:0008373]; protein glycosylation [GO:0006486],integral component of membrane [GO:0016021]; sialyltransferase activity [GO:0008373]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Highly expressed in inflorescences and siliques and at lower levels in roots, leaves and stems. {ECO:0000269|PubMed:20738727}. locus:2025540; AT1G08660 glycosyltransferase CAZy family GT29 Sialyltransferase-like protein 5 (OsSTLP5) (EC 2.4.-.-) Q2R2B1 STLP5_ORYSJ STLP5 Os11g0572400 LOC_Os11g36420 OsJ_34319 FUNCTION: May possess sialyltransferase-like activity in vitro. {ECO:0000250|UniProtKB:Q94DD4}. ENOG411DVVA Q93XZ6 Q93XZ6_ARATH At1g04790 (RING/U-box superfamily protein) (Uncharacterized protein At1g04790; F13M7.22) 71493 At1g04790 (RING/U-box superfamily protein) (Uncharacterized protein At1g04790; F13M7.22) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2010582; AT1G04790 zinc finger OSJNBa0004N05.9 protein (Os04g0511600 protein),Os04g0511600 protein (cDNA clone:J013091B14, full insert sequence) Q7XPZ9,B7ECX5 Q7XPZ9_ORYSJ,B7ECX5_ORYSJ Os04g0511600 Os04g0511600 OSJNBa0004N05.9 OSNPB_040511600,Os04g0511600 OSNPB_040511600 ENOG411DVVB DWF5 Q9LDU6,A8MS34 ST7R_ARATH,A8MS34_ARATH 7-dehydrocholesterol reductase (7-DHC reductase) (EC 1.3.1.21) (Protein DWARF 5) (Sterol Delta(7)-reductase),Ergosterol biosynthesis ERG4/ERG24 family Dwarf; Low brassinosteroid levels-K. Feldmann-2000 FUNCTION: Production of cholesterol by reduction of C7-C8 double bond of 7-dehydrocholesterol (7-DHC). Lesions in the gene coding for the enzyme cause dwarfism. PATHWAY: Lipid metabolism; steroid biosynthesis. ARA:AT1G50430-MONOMER;MetaCyc:AT1G50430-MONOMER; R-ATH-6807047;R-ATH-6807062; 1.3.1.21; 1.3.1.21 49591,49405 7-dehydrocholesterol reductase (7-DHC reductase) (EC 1.3.1.21) (Protein DWARF 5) (Sterol Delta(7)-reductase),Ergosterol biosynthesis ERG4/ERG24 family endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; 7-dehydrocholesterol reductase activity [GO:0047598]; sterol delta7 reductase activity [GO:0009918]; brassinosteroid biosynthetic process [GO:0016132]; cholesterol biosynthetic process [GO:0006695],integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [GO:0016628] locus:2008071; AT1G50430 7-dehydrocholesterol Os02g0465400 protein (Putative sterol delta-7 reductase) Q6K4V9 Q6K4V9_ORYSJ Os02g0465400 Os02g0465400 OSJNBa0035A24.50 OSNPB_020465400 ENOG411DVVC FKBP16-3 O22870,A0A1P8B252 FK163_ARATH,A0A1P8B252_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic (PPIase FKBP16-3) (EC 5.2.1.8) (FK506-binding protein 16-3) (AtFKBP16-3) (Immunophilin FKBP16-3) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 23564,17632 Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic (PPIase FKBP16-3) (EC 5.2.1.8) (FK506-binding protein 16-3) (AtFKBP16-3) (Immunophilin FKBP16-3) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755],peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2058218; AT2G43560 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q6ZIT9 Q6ZIT9_ORYSJ Os08g0541400 Os08g0541400 OJ1211_G06.16 OsJ_28130 OSNPB_080541400 ENOG411DVVD MTI20.7 F4KDE6 F4KDE6_ARATH Uncharacterized protein 44007 Uncharacterized protein locus:2174408; AT5G57830 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411DVVE MCO15.15,AR192 Q9FLP3,Q8LB47 Q9FLP3_ARATH,Q8LB47_ARATH GrpE protein homolog FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (By similarity). Seems to control the nucleotide-dependent binding of mitochondrial HSP70 to substrate proteins (By similarity). Binds ATP (PubMed:17137349). Interacts with copper ions Cu(2+) (PubMed:20018591). {ECO:0000250|UniProtKB:P38523, ECO:0000250|UniProtKB:Q9HAV7, ECO:0000269|PubMed:17137349, ECO:0000269|PubMed:20018591}.,FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (By similarity). Seems to control the nucleotide-dependent binding of mitochondrial HSP70 to substrate proteins (By similarity). Binds ATP (By similarity). Interacts with copper ions Cu(2+) (PubMed:20018591). Confers thermotolerance to long-term exposure at moderately high temperature (TMHT at 35 degrees Celsius) (PubMed:22128139). {ECO:0000250|UniProtKB:P38523, ECO:0000250|UniProtKB:Q9FLP3, ECO:0000250|UniProtKB:Q9HAV7, ECO:0000269|PubMed:20018591, ECO:0000269|PubMed:22128139}. 33203,36116 GrpE protein homolog mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; presequence translocase-associated import motor [GO:0001405]; adenyl-nucleotide exchange factor activity [GO:0000774]; ATP binding [GO:0005524]; chaperone binding [GO:0051087]; copper ion binding [GO:0005507]; protein homodimerization activity [GO:0042803]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; protein import into mitochondrial matrix [GO:0030150]; response to UV [GO:0009411],mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; presequence translocase-associated import motor [GO:0001405]; adenyl-nucleotide exchange factor activity [GO:0000774]; chaperone binding [GO:0051087]; copper ion binding [GO:0005507]; protein homodimerization activity [GO:0042803]; unfolded protein binding [GO:0051082]; heat acclimation [GO:0010286]; protein folding [GO:0006457]; protein import into mitochondrial matrix [GO:0030150]; response to heat [GO:0009408] locus:2161615;,locus:2116277; AT5G55200,AT4G26780 Essential component of the PAM complex a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (By similarity) GrpE protein homolog Q6EPR4,Q6Z0G0 Q6EPR4_ORYSJ,Q6Z0G0_ORYSJ Os09g0284400 OJ1190_B07.11 OsJ_28684 OSJNBa0009H03.28 OSNPB_090284400,Os08g0338700 Os08g0338700 OsJ_26957 OSJNBa0062G05.3 OSNPB_080338700 P0702G08.16 FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. {ECO:0000256|RuleBase:RU000640}. ENOG411DVVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os11g0573500 protein,RING-type E3 ubiquitin transferase (EC 2.3.2.27),Os04g0358300 protein,Os12g0183450 protein Q2R2A1,Q6ER82,A0A0P0W9A5,A0A0P0Y809 Q2R2A1_ORYSJ,Q6ER82_ORYSJ,A0A0P0W9A5_ORYSJ,A0A0P0Y809_ORYSJ Os11g0573500 LOC_Os11g36490 OsJ_34327 OSNPB_110573500,Os02g0539200 OSJNBa0014M17.24 OSNPB_020539200,Os04g0358300 OSNPB_040358300,Os12g0183450 OSNPB_120183450 ENOG411DVVG Q8L844 PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial FUNCTION: Required for chloroplast protein synthesis and accumulation of subunits of the thylakoid protein complexes. Activates psaC and petA translation by binding their 5'-UTRs. Required for the correct processing of petB and petD mRNAs. Interacts with the petB and petD intergenic region and is required for the generation of petB and petD monocistronic RNAs. {ECO:0000269|PubMed:28261232}. 80003 Pentatricopeptide repeat-containing protein At5g42310, mitochondrial chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2157607; AT5G42310 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DVVP Q9SA98 ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB (EC 1.14.11.-) (Alkylated DNA repair protein alkB homolog) FUNCTION: Putative dioxygenase that may repair alkylated DNA or RNA by oxidative demethylation. Requires molecular oxygen, alpha-ketoglutarate and iron (By similarity). {ECO:0000250}. 1.14.11.- 39020 Alpha-ketoglutarate-dependent dioxygenase alkB (EC 1.14.11.-) (Alkylated DNA repair protein alkB homolog) mitochondrion [GO:0005739]; nuclear euchromatin [GO:0005719]; DNA-N1-methyladenine dioxygenase activity [GO:0043734]; ferrous iron binding [GO:0008198]; methylcytosine dioxygenase activity [GO:0070579]; DNA repair [GO:0006281]; oxidative single-stranded DNA demethylation [GO:0035552]; RNA repair [GO:0042245] locus:2027347; AT1G11780 Alpha-ketoglutarate-dependent dioxygenase Os11g0488500 protein (Fragment),Os11g0488050 protein (Os11g0488400 protein) Q0ISN2,C7J8M7,A0A0P0Y2L9 Q0ISN2_ORYSJ,C7J8M7_ORYSJ,A0A0P0Y2L9_ORYSJ Os11g0488500 OSNPB_110488500,Os11g0488050 Os11g0488400 OSNPB_110488400 ENOG411DVVQ Q9CAJ9 Y1385_ARATH BTB/POZ domain-containing protein At1g63850 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 61495 BTB/POZ domain-containing protein At1g63850 protein ubiquitination [GO:0016567] locus:2195488; AT1G63850 BTB POZ domain-containing protein OSJNBa0011J08.25 protein (OSJNBa0064M23.3 protein) (Os04g0579700 protein) Q7X711 Q7X711_ORYSJ Os04g0579700 OsJ_15888 OSJNBa0011J08.25 OSJNBa0064M23.3 OSNPB_040579700 ENOG411DVVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411DVVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Expressed protein (Os10g0406200 protein) Q338G0 Q338G0_ORYSJ Os10g0406200 LOC_Os10g26610 OSNPB_100406200 ENOG411DVVT E1 ALPHA,IAR4 P52901,Q8H1Y0,A0A1P8AQS2 ODPA1_ARATH,ODPA2_ARATH,A0A1P8AQS2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial (PDHE1-A) (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial (PDHE1-A) (EC 1.2.4.1) (Protein IAA-CONJUGATE-RESISTANT 4),Pyruvate dehydrogenase E1 component subunit alpha (EC 1.2.4.1) DISRUPTION PHENOTYPE: Reduced sensitivity to several IAA-amino acid conjugates. {ECO:0000269|PubMed:15173569}. Short primary root; Few, short root hairs; Insensitive to IAA-amino acid conjugates-W. Gray-2009 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).,FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). {ECO:0000256|RuleBase:RU361139}. ARA:AT1G59900-MONOMER;,ARA:AT1G24180-MONOMER; R-ATH-204174;R-ATH-5362517;R-ATH-70268; 1.2.4.1 43059,43359,41896 Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial (PDHE1-A) (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial (PDHE1-A) (EC 1.2.4.1) (Protein IAA-CONJUGATE-RESISTANT 4),Pyruvate dehydrogenase E1 component subunit alpha (EC 1.2.4.1) cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; pyruvate dehydrogenase (acetyl-transferring) activity [GO:0004739]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; cobalt ion binding [GO:0050897]; pyruvate dehydrogenase (acetyl-transferring) activity [GO:0004739]; zinc ion binding [GO:0008270]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; glycolytic process [GO:0006096]; response to salt stress [GO:0009651],intracellular membrane-bounded organelle [GO:0043231]; pyruvate dehydrogenase (acetyl-transferring) activity [GO:0004739]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086] TISSUE SPECIFICITY: Expressed in roots, rosettes and flowers. {ECO:0000269|PubMed:7590338}. locus:2025966;,locus:2032367; AT1G59900,AT1G24180 pyruvate dehydrogenase E1 component Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial (PDHE1-A) (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial (PDHE1-A) (EC 1.2.4.1) Q6Z5N4,Q654V6 ODPA1_ORYSJ,ODPA2_ORYSJ Os02g0739600 LOC_Os02g50620 OsJ_08320 P0684F11.25,Os06g0246500 LOC_Os06g13720 OJ1136_C11.8 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. ENOG411DVVU HISN7,IMPL2 Q6NPM8,A0A1P8B6U8 HIS7_ARATH,A0A1P8B6U8_ARATH Bifunctional phosphatase IMPL2, chloroplastic (Histidinol-phosphatase) (Histidinol-phosphate phosphatase) (HPP) (EC 3.1.3.15) (Inositol-phosphate phosphatase) (EC 3.1.3.25) (L-galactose 1-phosphate phosphatase) (EC 3.1.3.93) (Protein HISTIDINE BIOSYNTHESIS 7) (Protein MYO-INOSITOL MONOPHOSPHATASE-LIKE 2),Inositol monophosphatase family protein DISRUPTION PHENOTYPE: Embryo lethality. {ECO:0000269|PubMed:19339506, ECO:0000269|PubMed:20023146, ECO:0000269|PubMed:20960216}. Embryo defective; Preglobular / Globular-R. Ingle-2010 FUNCTION: Phosphatase required for histidine production. Acts also on L-galactose 1-phosphate (L-Gal 1-P), D-myoinositol 3-phosphate (D-Ins 3-P) and D-myoinositol 1-phosphate (D-Ins 1-P). {ECO:0000269|PubMed:19339506, ECO:0000269|PubMed:20023146, ECO:0000269|PubMed:20960216}. MISCELLANEOUS: No redundancy with IMPL1 or VTC4. PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 8/9.; PATHWAY: Polyol metabolism; myo-inositol biosynthesis; myo-inositol from D-glucose 6-phosphate: step 2/2. MetaCyc:AT4G39120-MONOMER; 3.1.3.15;3.1.3.25; 3.1.3.15; 3.1.3.25; 3.1.3.93 38235,41760 Bifunctional phosphatase IMPL2, chloroplastic (Histidinol-phosphatase) (Histidinol-phosphate phosphatase) (HPP) (EC 3.1.3.15) (Inositol-phosphate phosphatase) (EC 3.1.3.25) (L-galactose 1-phosphate phosphatase) (EC 3.1.3.93) (Protein HISTIDINE BIOSYNTHESIS 7) (Protein MYO-INOSITOL MONOPHOSPHATASE-LIKE 2),Inositol monophosphatase family protein chloroplast [GO:0009507]; histidinol-phosphatase activity [GO:0004401]; inositol monophosphate 1-phosphatase activity [GO:0008934]; inositol monophosphate 3-phosphatase activity [GO:0052832]; inositol monophosphate 4-phosphatase activity [GO:0052833]; inositol monophosphate phosphatase activity [GO:0052834]; metal ion binding [GO:0046872]; histidine biosynthetic process [GO:0000105]; inositol biosynthetic process [GO:0006021]; phosphatidylinositol phosphorylation [GO:0046854],histidinol-phosphatase activity [GO:0004401]; phosphatidylinositol phosphorylation [GO:0046854] DEVELOPMENTAL STAGE: Expressed at all developmental stages. Detected in globular to heart stage embryos. {ECO:0000269|PubMed:20023146, ECO:0000269|PubMed:20960216}. TISSUE SPECIFICITY: Ubiquitous. High expression in roots. Expressed in pistil and seed endosperm. {ECO:0000269|PubMed:20023146, ECO:0000269|PubMed:20960216}. AT4G39120 phosphatase IMPL2 Os07g0191000 protein (Putative N-amidino-scyllo-inosamine-4-phosphate phosphatase),Os09g0322900 protein Q6Z4I1,A0A0P0XL79 Q6Z4I1_ORYSJ,A0A0P0XL79_ORYSJ Os07g0191000 Os07g0191000 OSJNBb0003E08.29 OSNPB_070191000,Os09g0322900 OSNPB_090322900 ENOG411DVVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os07g0116300 protein,Os03g0358500 protein Q8H2N2,A0A0P0VXK4 Q8H2N2_ORYSJ,A0A0P0VXK4_ORYSJ OJ1138_B05.126 Os07g0116300 OSNPB_070116300,Os03g0358500 OSNPB_030358500 ENOG411DVVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA plant-specific domain TIGR01589 family protein Os06g0705300 protein (cDNA clone:J013000D12, full insert sequence) Q5Z8V1 Q5Z8V1_ORYSJ P0018H04.12-1 Os06g0705300 OsJ_22568 OSNPB_060705300 ENOG411EE50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Conserved hypothetical protein Os10g0547000 protein A0A0P0XWU3 A0A0P0XWU3_ORYSJ Os10g0547000 OSNPB_100547000 ENOG411EE52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411EE5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family NA NA NA NA NA NA NA ENOG411EE5P STY17,STY8 Q8RWL6,O22558 STY17_ARATH,STY8_ARATH Serine/threonine-protein kinase STY17 (EC 2.7.11.1) (Serine/threonine/tyrosine-protein kinase 17),Serine/threonine-protein kinase STY8 (EC 2.7.11.1) (Serine/threonine/tyrosine-protein kinase 8) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants sty8 and sty46 show retarded growth. {ECO:0000269|PubMed:21799034}. FUNCTION: Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides). May be part of a cytosolic regulatory network involved in chloroplast protein import. Does not phosphorylate mitochondrion precursor proteins. Specific for ATP and does not utilize other NTPs (PubMed:17090544, PubMed:16429265). Plays a role in chloroplast biogenesis and differentiation in cotyledons, possibly through phosphorylation of chloroplast preproteins (PubMed:21799034). {ECO:0000269|PubMed:17090544, ECO:0000269|PubMed:21799034}. MISCELLANEOUS: Plants silencing STY17 does not show visible phenotype under normal growth conditions, but plants silencing STY17 in the double mutant sty8 and sty46 background show more severe retarded growth compared to the double mutant itself. {ECO:0000269|PubMed:21799034}. 2.7.11.1 64696,61509 Serine/threonine-protein kinase STY17 (EC 2.7.11.1) (Serine/threonine/tyrosine-protein kinase 17),Serine/threonine-protein kinase STY8 (EC 2.7.11.1) (Serine/threonine/tyrosine-protein kinase 8) cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; chloroplast organization [GO:0009658]; intracellular signal transduction [GO:0035556] locus:2128043;,locus:2827943; AT4G35780,AT2G17700 kinase family NA NA NA NA NA NA NA ENOG411EE5Y UGT73C7 Q9SCP5 U73C7_ARATH UDP-glycosyltransferase 73C7 (EC 2.4.1.-) ARA:AT3G53160-MONOMER; 2.4.1.- 54570 UDP-glycosyltransferase 73C7 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152]; response to other organism [GO:0051707] locus:2101948; AT3G53160 UDP-glucosyl transferase 73C7 NA NA NA NA NA NA NA ENOG411EE5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os01g0260950 protein A0A0P0V0K8 A0A0P0V0K8_ORYSJ Os01g0260950 OSNPB_010260950 ENOG411EJW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0632000 protein Q8RZJ5 Q8RZJ5_ORYSJ B1158C05.16 Os01g0632000 OSNPB_010632000 ENOG411EJWH F4JGH3 F4JGH3_ARATH Nucleoporin GLE1-like protein 25765 Nucleoporin GLE1-like protein locus:504955347; AT4G05523 Inherit from KOG: GLE1 RNA export mediator homolog (yeast) NA NA NA NA NA NA NA ENOG411EJWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tafazzin NA NA NA NA NA NA NA ENOG411EJWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription initiation factor IID 31kD subunit NA NA NA NA NA NA NA ENOG411EJWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin-like domain (DUF836) NA NA NA NA NA NA NA ENOG411EJWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar (H+)-ATPase G subunit NA NA NA NA NA NA NA ENOG411EJWQ F26O13.140 Q9SCZ9 Q9SCZ9_ARATH At3g51500 (Uncharacterized protein F26O13.140) 13253 At3g51500 (Uncharacterized protein F26O13.140) locus:2081835; AT3G51500 NA NA NA NA NA NA NA NA ENOG411EJWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: N-alpha-acetyltransferase 25 NatB auxiliary subunit NA NA NA NA NA NA NA ENOG411EJWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: early flowering NA NA NA NA NA NA NA ENOG411EJWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain NA NA NA NA NA NA NA ENOG411E6N3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0488500 protein,Os02g0709350 protein Q67VX2,Q8S3T0 Q67VX2_ORYSJ,Q8S3T0_ORYSJ P0583E12.15 Os06g0488500 OSNPB_060488500,49D11.2 Os02g0709350 OJ1311_H06.2 OsJ_08104 OSJNBb0060O16.44 OSNPB_020709350 ENOG411E6N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0201600 protein (VsaA-like) (cDNA clone:J033042J01, full insert sequence) Q5QN39 Q5QN39_ORYSJ Os01g0201600 Os01g0201600 B1015E06.35 OsJ_00770 OSNPB_010201600 P0489A05.7 ENOG411E6N0 Q9FYK6,B3H543 Q9FYK6_ARATH,B3H543_ARATH F21J9.24 (RING/U-box superfamily protein),RING/U-box superfamily protein 14855,15193 F21J9.24 (RING/U-box superfamily protein),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:1006230720;,locus:4515102735; AT1G24580,AT1G67856 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E6N7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Archease protein family (MTH1598/TM1083) NA NA NA NA NA NA NA ENOG411E6N6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0459050 protein,Os02g0779300 protein (cDNA clone:001-105-A09, full insert sequence) B9FX26,Q6K7G4 B9FX26_ORYSJ,Q6K7G4_ORYSJ Os07g0459050 OsJ_24135 OSNPB_070459050,Os02g0779300 OJ1293_A01.14 OsJ_08599 OSNPB_020779300 ENOG411E6N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0759375 protein (Fragment),Os01g0243400 protein (Fragment) A0A0P0W477,A0A0N7KCN2 A0A0P0W477_ORYSJ,A0A0N7KCN2_ORYSJ Os03g0759375 OSNPB_030759375,Os01g0243400 OSNPB_010243400 ENOG411E6N4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: VQ motif Os10g0577200 protein (Fragment) Q0IVD9 Q0IVD9_ORYSJ Os10g0577200 OSNPB_100577200 ENOG411E6N8 F4K1A8,F4K1A9 F4K1A8_ARATH,F4K1A9_ARATH C2H2 and C2HC zinc fingers superfamily protein R-ATH-72165; 16729,18784 C2H2 and C2HC zinc fingers superfamily protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270],U12-type spliceosomal complex [GO:0005689]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:5019474859; AT5G26749 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 3 (OsC3H3) Q0JP11 C3H3_ORYSJ Os01g0252200 LOC_Os01g14870 OsJ_01120 ENOG411E6NP SAUR5 F4JLH5 F4JLH5_ARATH SAUR-like auxin-responsive protein family 13438 SAUR-like auxin-responsive protein family response to auxin [GO:0009733] locus:2116895; AT4G34810 auxin-induced protein NA NA NA NA NA NA NA ENOG411E6NW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Os02g0608700 protein A0A0P0VLH2 A0A0P0VLH2_ORYSJ Os02g0608700 OSNPB_020608700 ENOG411E6NV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E6NU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0629100 protein A0A0P0Y4I6 A0A0P0Y4I6_ORYSJ Os11g0629100 OSNPB_110629100 ENOG411E6NT Q9SZE0 Q9SZE0_ARATH At4g29110 (Cotton fiber protein) (Uncharacterized protein AT4g29110) (Uncharacterized protein F19B15.140) 22784 At4g29110 (Cotton fiber protein) (Uncharacterized protein AT4g29110) (Uncharacterized protein F19B15.140) vacuole [GO:0005773]; response to chitin [GO:0010200] locus:2119911; AT4G29110 Inherit from NOG: Avr9 Cf-9 rapidly elicited protein 146 NA NA NA NA NA NA NA ENOG411E6NG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0173500 protein,Os05g0173500 protein (cDNA clone:001-124-F10, full insert sequence),Os01g0960600 protein,Os01g0956500 protein Q65WU5,Q0DKC7,B9EWK6,Q5JJU0,A0A0P0WIS5 Q65WU5_ORYSJ,Q0DKC7_ORYSJ,B9EWK6_ORYSJ,Q5JJU0_ORYSJ,A0A0P0WIS5_ORYSJ Os05g0173500 OSNPB_050173500 P0672D07.12,Os05g0173500 Os05g0173500 OSNPB_050173500,Os01g0960600 OsJ_04845 OSNPB_010960600,Os01g0956500 B1139B11.32 OJ1294_F06.1 OsJ_04813 OSNPB_010956500,Os05g0173500 OSNPB_050173500 ENOG411E6NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0638800 protein A0A0P0V5Q9 A0A0P0V5Q9_ORYSJ Os01g0638800 OSNPB_010638800 ENOG411E6ND O49383 O49383_ARATH Beta-1,3-N-Acetylglucosaminyltransferase family protein (Uncharacterized protein AT4g32090) (Uncharacterized protein F10N7.100) 13145 Beta-1,3-N-Acetylglucosaminyltransferase family protein (Uncharacterized protein AT4g32090) (Uncharacterized protein F10N7.100) transferase activity, transferring glycosyl groups [GO:0016757] locus:2116702; AT4G32090 Inherit from euNOG: galactosyltransferase NA NA NA NA NA NA NA ENOG411E6NK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0417500 protein (Os05g0417600 protein) (cDNA clone:J013153B01, full insert sequence) Q688K3 Q688K3_ORYSJ Os05g0417600 Os05g0417500 OSNPB_050417600 P0579A05.6 ENOG411E6NI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant calmodulin-binding domain Os02g0150200 protein,Os11g0440422 protein B9F2R1,A0A0P0Y226 B9F2R1_ORYSJ,A0A0P0Y226_ORYSJ Os02g0150200 Os02g0150200 OsJ_05389 OSNPB_020150200,Os11g0440422 OSNPB_110440422 ENOG411ECX4 NPF5.16 Q9SK96 PTR10_ARATH Protein NRT1/ PTR FAMILY 5.16 (AtNPF5.16) R-ATH-427975;R-ATH-6798695; 62168 Protein NRT1/ PTR FAMILY 5.16 (AtNPF5.16) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:17481610}. locus:2009472; AT1G22550 proton-dependent oligopeptide transport NA NA NA NA NA NA NA ENOG411ECX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root hair defective 3 GTP-binding protein (RHD3) NA NA NA NA NA NA NA ENOG411ECX6 Q9STH4 Q9STH4_ARATH F-box/kelch-repeat protein (Uncharacterized protein AT4g12370) (Uncharacterized protein T4C9.210) 35953 F-box/kelch-repeat protein (Uncharacterized protein AT4g12370) (Uncharacterized protein T4C9.210) locus:2139064; AT4G12370 NA NA NA NA NA NA NA NA ENOG411ECX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411ECX0 LAC9,LAC8 Q9LFD1,Q9LFD2 LAC9_ARATH,LAC8_ARATH Laccase-9 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 9) (Diphenol oxidase 9) (Urishiol oxidase 9),Laccase-8 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 8) (Diphenol oxidase 8) (Urishiol oxidase 8) no observable phenotype,early flowering FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products (By similarity). Involved in the flowering time inhibition. {ECO:0000250, ECO:0000269|PubMed:16804053}. ARA:AT5G01050-MONOMER;,ARA:AT5G01040-MONOMER; 1.10.3.2 65589,65282 Laccase-9 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 9) (Diphenol oxidase 9) (Urishiol oxidase 9),Laccase-8 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 8) (Diphenol oxidase 8) (Urishiol oxidase 8) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274]; response to copper ion [GO:0046688]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Expressed along a developmental gradient in the inflorescence stem, with higher levels in olders organs and low levels in young tissues. {ECO:0000269|PubMed:15940465}. TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}.,TISSUE SPECIFICITY: Predominantly expressed in tissues other than the inflorescence stem, especially in roots. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2150049;,locus:2150039; AT5G01050,AT5G01040 hydroquinone:oxygen oxidoreductase activity NA NA NA NA NA NA NA ENOG411ECX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CPDc Os04g0529500 protein (Fragment) A0A0P0WD40 A0A0P0WD40_ORYSJ Os04g0529500 OSNPB_040529500 ENOG411ECX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411ECX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411ECX9 DTX24,DTX25,MVA3.5 F4J158,Q8L616,A0A1P8BAR9 DTX24_ARATH,DTX25_ARATH,A0A1P8BAR9_ARATH Protein DETOXIFICATION 24 (AtDTX24) (Multidrug and toxic compound extrusion protein 24) (MATE protein 24),Protein DETOXIFICATION 25 (AtDTX25) (Multidrug and toxic compound extrusion protein 25) (MATE protein 25),MATE efflux family protein R-ATH-425366; 55297,54619,44585 Protein DETOXIFICATION 24 (AtDTX24) (Multidrug and toxic compound extrusion protein 24) (MATE protein 24),Protein DETOXIFICATION 25 (AtDTX25) (Multidrug and toxic compound extrusion protein 25) (MATE protein 25),MATE efflux family protein integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2096379;,locus:2175916; AT3G03620,AT5G17700 mate efflux NA NA NA NA NA NA NA ENOG411ECXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol-4-phosphate 5-Kinase NA NA NA NA NA NA NA ENOG411ECXU Q9M0F4,Q9M0F5 Q9M0F4_ARATH,Q9M0F5_ARATH Acid phosphatase-like protein (At4g29270) (HAD superfamily, subfamily IIIB acid phosphatase),Acid phosphatase-like protein (HAD superfamily, subfamily IIIB acid phosphatase) (Putative acid phosphatase) ARA:AT4G29270-MONOMER; 28746,28906 Acid phosphatase-like protein (At4g29270) (HAD superfamily, subfamily IIIB acid phosphatase),Acid phosphatase-like protein (HAD superfamily, subfamily IIIB acid phosphatase) (Putative acid phosphatase) acid phosphatase activity [GO:0003993],cytosol [GO:0005829]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; acid phosphatase activity [GO:0003993] locus:2118329;,locus:2118314; AT4G29270,AT4G29260 HAD superfamily subfamily IIIB (Acid phosphatase) NA NA NA NA NA NA NA ENOG411ECXV F4JIB6,A0A1P8B8X7 F4JIB6_ARATH,A0A1P8B8X7_ARATH Fas-binding factor-like protein 88326,88239 Fas-binding factor-like protein locus:2138566; AT4G08630 NA NA NA NA NA NA NA NA ENOG411ECXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411ECXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411ECXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLC domain NA NA NA NA NA NA NA ENOG411ECXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411ECXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ECXY DTX39,DTX38 Q940N9,F4JKB9,A0A1P8B6P0,F4JKB8 DTX39_ARATH,DTX38_ARATH,A0A1P8B6P0_ARATH,F4JKB8_ARATH Protein DETOXIFICATION 39 (AtDTX39) (Multidrug and toxic compound extrusion protein 39) (MATE protein 39),Protein DETOXIFICATION 38 (AtDTX38) (Multidrug and toxic compound extrusion protein 38) (MATE protein 38),MATE efflux family protein,Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) R-ATH-425366; 55690,55112,43212,56520 Protein DETOXIFICATION 39 (AtDTX39) (Multidrug and toxic compound extrusion protein 39) (MATE protein 39),Protein DETOXIFICATION 38 (AtDTX38) (Multidrug and toxic compound extrusion protein 38) (MATE protein 38),MATE efflux family protein,Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:4515103434; AT4G21910,AT4G21903 mate efflux NA NA NA NA NA NA NA ENOG411ECXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os10g0326400 protein),Os10g0326800 protein,Os11g0152150 protein,Os05g0441026 protein Q7XFS3,A0A0P0XT33,A0A0P0XYT7,A0A0P0WMU2 Q7XFS3_ORYSJ,A0A0P0XT33_ORYSJ,A0A0P0XYT7_ORYSJ,A0A0P0WMU2_ORYSJ LOC_Os10g17930 Os10g0326400 OsJ_31071 OSJNBa0093I09.17 OSNPB_100326400,Os10g0326800 OSNPB_100326800,Os11g0152150 OSNPB_110152150,Os05g0441026 OSNPB_050441026 ENOG411ECXD Q8W569,F4JV21 Q8W569_ARATH,F4JV21_ARATH AT4g26650/T15N24_100 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 49397,49057 AT4g26650/T15N24_100 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein mRNA binding [GO:0003729],RNA binding [GO:0003723] locus:2133862; AT4G26650 RNA recognition NA NA NA NA NA NA NA ENOG411ECXE NAC045 A4VCM0 NAC45_ARATH NAC domain-containing protein 45 DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with NAC086 (AC Q9FFI5). Nac045 and nac086 double mutants exhibit seedling lethality with defective development of the protophloem sieve element. {ECO:0000269|PubMed:25081480}. FUNCTION: Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. 55588 NAC domain-containing protein 45 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; sieve element differentiation [GO:0090603]; sieve element enucleation [GO:0090602]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}. locus:2097720; AT3G03200 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411ECXF F4J4Y0 P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 (p24 family protein delta1d) (p24delta1d) (p24 family protein delta6) (p24delta6) FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811434; 24230 Transmembrane emp24 domain-containing protein p24delta6 (p24 family protein delta1d) (p24delta1d) (p24 family protein delta6) (p24delta6) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2103222; AT3G10780 Emp24 gp25L p24 family NA NA NA NA NA NA NA ENOG411ECXG WRKY58 Q93WU7,B4G2A7,A0A1I9LLS9,A0A1I9LLS7,A0A1I9LLS8 WRK58_ARATH,B4G2A7_ARATH,A0A1I9LLS9_ARATH,A0A1I9LLS7_ARATH,A0A1I9LLS8_ARATH Probable WRKY transcription factor 58 (WRKY DNA-binding protein 58),At3g01085 (Protein kinase superfamily protein),WRKY DNA-binding protein 58,Protein kinase superfamily protein Enhanced resistance to Psm ES4326 infection. Curled, pointed, small, leaves with rough texture under defense response conditions-X. Dong-2006 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. R-ATH-674695;R-ATH-6796648; 47130,71385,35613,71629,50679 Probable WRKY transcription factor 58 (WRKY DNA-binding protein 58),At3g01085 (Protein kinase superfamily protein),WRKY DNA-binding protein 58,Protein kinase superfamily protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of defense response [GO:0031347]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2102147;,locus:504955609; AT3G01080,AT3G01085 AT3G01085 (E 0.0) protein kinase family protein NA NA NA NA NA NA NA ENOG411ECXA O82344,A0A1P8AXA9 O82344_ARATH,A0A1P8AXA9_ARATH At2g46250/T3F17.10 (Myosin heavy chain-like protein) (Uncharacterized protein At2g46250),Myosin heavy chain-like protein 54192,43354 At2g46250/T3F17.10 (Myosin heavy chain-like protein) (Uncharacterized protein At2g46250),Myosin heavy chain-like protein locus:2062877; AT2G46250 NA NA NA NA NA NA NA NA ENOG411ECXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os08g0137050 protein (Fragment) A0A0P0XBF3 A0A0P0XBF3_ORYSJ Os08g0137050 OSNPB_080137050 ENOG411ECXC Q9ZSH7,Q84R27,A0A178VIE8,A0A1I9LM71 Y4158_ARATH,Y3896_ARATH,A0A178VIE8_ARATH,A0A1I9LM71_ARATH B3 domain-containing protein At4g01580,B3 domain-containing protein At3g18960,AP2/B3-like transcriptional factor family protein 22122,24091,22223,19891 B3 domain-containing protein At4g01580,B3 domain-containing protein At3g18960,AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2133362;,locus:2085859; AT4G01580,AT3G18960 transcription DNA-dependent NA NA NA NA NA NA NA ENOG411ECXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: beige BEACH domain containing protein NA NA NA NA NA NA NA ENOG411ECXH ATG18E Q9FHK8 AT18E_ARATH Autophagy-related protein 18e (AtATG18e) FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity). {ECO:0000250}. 41669 Autophagy-related protein 18e (AtATG18e) cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; pre-autophagosomal structure membrane [GO:0034045]; vacuolar membrane [GO:0005774]; phosphatidylinositol-3,5-bisphosphate binding [GO:0080025]; phosphatidylinositol-3-phosphate binding [GO:0032266]; autophagy of mitochondrion [GO:0000422]; nucleophagy [GO:0044804]; protein lipidation [GO:0006497]; protein localization to pre-autophagosomal structure [GO:0034497]; protein transport [GO:0015031] locus:2156779; AT5G05150 WD40 NA NA NA NA NA NA NA ENOG411ECXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA eukaryotic translation initiation factor NA NA NA NA NA NA NA ENOG411ECXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: nucleolar and coiled-body phosphoprotein 1 Os02g0152700 protein (Fragment) A0A0P0VEX5 A0A0P0VEX5_ORYSJ Os02g0152700 OSNPB_020152700 ENOG411ECXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411DTYS WDR5A Q9M2Z2 WDR5A_ARATH COMPASS-like H3K4 histone methylase component WDR5A (AtWDR5A) Embryo defective-H. Cerutti-2004 FUNCTION: Forms multiple COMPASS-like complexes involved in histone methylation by interacting with different histone H3 'Lys-4' methyltransferases such as ATX1, SDG14 or SDG16 (PubMed:21423667). Binds to target loci chromatin, increasing H3K4 trimethylation and causing activation of the gene (PubMed:19567704). Upregulates FLC and MAF4 expression to delay flowering (PubMed:19567704). {ECO:0000269|PubMed:19567704, ECO:0000269|PubMed:21423667}. R-ATH-3214841;R-ATH-3214858;R-ATH-8951664; 34820 COMPASS-like H3K4 histone methylase component WDR5A (AtWDR5A) nucleus [GO:0005634]; Set1C/COMPASS complex [GO:0048188]; histone binding [GO:0042393]; methyltransferase activity [GO:0008168]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Strongly expressed in developing embryos and endosperms (PubMed:21423667). Expressed in shoot and root apical regions, and in vasculature (PubMed:19567704). {ECO:0000269|PubMed:19567704, ECO:0000269|PubMed:21423667}. locus:2097435; AT3G49660 WD repeat-containing protein Os03g0725400 protein (Will die slowly protein, putative, expressed) (cDNA clone:001-127-D02, full insert sequence) (cDNA clone:002-102-C04, full insert sequence) (cDNA clone:J033025A12, full insert sequence) Q10DN8 Q10DN8_ORYSJ LOC_Os03g51550 Os03g0725400 OSNPB_030725400 ENOG411DTYR DPBF3 Q9LES3 AI5L2_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 2 (ABA-responsive element-binding protein 3) (Dc3 promoter-binding factor 3) (AtDPBF3) (bZIP transcription factor 66) (AtbZIP66) FUNCTION: Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. 32419 ABSCISIC ACID-INSENSITIVE 5-like protein 2 (ABA-responsive element-binding protein 3) (Dc3 promoter-binding factor 3) (AtDPBF3) (bZIP transcription factor 66) (AtbZIP66) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. locus:2103665; AT3G56850 Abscisic acid-insensitive 5-like protein BZIP transcription factor (Os05g0489700 protein) (Putative ABA-responsive element-binding protein 3) (cDNA clone:001-114-H11, full insert sequence),Os01g0813100 protein Q6AVM5,A0A0P0V9J7 Q6AVM5_ORYSJ,A0A0P0V9J7_ORYSJ Os05g0489700 OJ1119_H02.18 OSNPB_050489700,Os01g0813100 OSNPB_010813100 ENOG411EA06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase NA NA NA NA NA NA NA ENOG411EA07 AGL24 O82794 AGL24_ARATH MADS-box protein AGL24 (Protein AGAMOUS-LIKE 24) DISRUPTION PHENOTYPE: Delayed flowering. {ECO:0000269|PubMed:12451184}. Late flowering in both long- and short-day growth conditions but retain a normal response to photoperiod compared to wild type.,Slight increase in delay of flowering compared to agl24 single mutant.,Frequently (70% of double mutant flowers) sepals were fused and they showed carpelloid features including stigmatic papillae and multiple ovules developed along the margin of each organ.,The double mutant has the same flowering time as the svp single mutant.,Under standard growing conditions (22°C) only the first three flowers of the double mutant were affected. These flowers had a reduced number of organs. In particular this reduction concerned the second and third floral whorls that produced three petals and five stamens whereas wild-type Arabidopsis thaliana flowers have four petals and six stamens. Furthermore some flowers showed homeotic conversion of sepals into petaloid organs.,When double mutant plants were grown at a higher temperature (>30°C) almost all flowers (90%) were severely affected in contrast with wild-type and single mutant plants that showed no floral phenotype. The double mutant flowers exhibited variable floral defects and all produced a reduced number of organs.,The triple mutant displayed proliferating inflorescence meristems in positions that would normally be occupied by flowers. This phenotype is very similar to the ap1-1 cal-1 double mutant phenotype. However the mutant formed a few flower meristems that produced stamens and carpels. The triple mutant also showed increased levels of the FUL mRNA in the inflorescences when compared with wild-type (five-fold) and the ap1-1 cal double mutant (two-fold).,Unlike the agl24-2 svp-41 double mutant where severe phenotypes similar to the lug mutant were only observed when plants were grown at 30°C in the ap1-12 agl24-2 svp-41 triple mutant severe lug-type phenotypes were observed under normal growing conditions (22°C). Late flowering-P. Kumar-2002 FUNCTION: Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}. 25064 MADS-box protein AGL24 (Protein AGAMOUS-LIKE 24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; floral whorl development [GO:0048438]; maintenance of inflorescence meristem identity [GO:0010077]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of vernalization response [GO:0010220]; protein import into nucleus, translocation [GO:0000060]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During vegetative phase, expressed in the entire shoot apical meristem and in emerging leaf primordia. During floral transition, gradually detectable in the transitional shoot apex and young cauline leaves. Detected in the inflorescence meristem. Present throughout the tunica (superficial layers) of the floral meristem during early stages of flower development. Later disappears prior to emergence of sepal primordia. At later stages of floral development, weakly expressed in the distal parts of stamens and carpels. Then restricted to pollen and the adaxial surface of the gynoecium. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:19656343}. TISSUE SPECIFICITY: Mostly expressed in shoot apical meristems, including floral meristems. Also detected in stems, seedlings, leaves, flowers and siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:19656343}. locus:2121924; AT4G24540 K-box region NA NA NA NA NA NA NA ENOG411EA04 BHLH11,bHLH11 Q8W2F2,A0A1P8B8S4,A0A1P8B8S6 BH011_ARATH,A0A1P8B8S4_ARATH,A0A1P8B8S6_ARATH Transcription factor bHLH11 (Basic helix-loop-helix protein 11) (AtbHLH11) (bHLH 11) (Transcription factor EN 137) (bHLH transcription factor bHLH011),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 31785,30749,32541 Transcription factor bHLH11 (Basic helix-loop-helix protein 11) (AtbHLH11) (bHLH 11) (Transcription factor EN 137) (bHLH transcription factor bHLH011),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed consitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2135169; AT4G36060 Basic helix-loop-helix NA NA NA NA NA NA NA ENOG411EA03 Q9SIK3 Q9SIK3_ARATH Nucleolar-like protein (Uncharacterized protein At2g21560) 31769 Nucleolar-like protein (Uncharacterized protein At2g21560) integral component of membrane [GO:0016021] locus:2049379; AT2G21560 NA NA NA NA NA NA NA NA ENOG411DTYH PTAC14 Q84JF5,A0A1P8B373 PTA14_ARATH,A0A1P8B373_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 (pTAC14) (EC 2.1.1.-) (Plastid-encoded RNA polymerase-associated protein 7) (PEP-associated protein 7),Plastid transcriptionally active 14 DISRUPTION PHENOTYPE: Seedling lethal, even with Suc as a carbon source. Impaired thylakoid formation in the initial process of chloroplast development leading to albino seedlings unable to grow photoautotrophically. Reduced plastid-encoded RNA polymerase (PEP) activity. {ECO:0000269|PubMed:22010110}. FUNCTION: Essential for chloroplast development, especially for thylakoid formation. Involved in plastid gene expression, probably by maintaining plastid-encoded RNA polymerase (PEP) activity. {ECO:0000269|PubMed:22010110}. 2.1.1.- 55611,42412 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 (pTAC14) (EC 2.1.1.-) (Plastid-encoded RNA polymerase-associated protein 7) (PEP-associated protein 7),Plastid transcriptionally active 14 chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; plastid-encoded plastid RNA polymerase complex [GO:0000427]; protein-lysine N-methyltransferase activity [GO:0016279]; chloroplast organization [GO:0009658]; peptidyl-lysine monomethylation [GO:0018026]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416]; thylakoid membrane organization [GO:0010027]; transcription from plastid promoter [GO:0042793] TISSUE SPECIFICITY: Mostly expressed in leaves, flowers and seedlings, and, to a lower extent, in stems and roots. {ECO:0000269|PubMed:22010110}. locus:2119822; AT4G20130 Rubisco LSMT substrate-binding Os05g0587200 protein Q6L5C3 Q6L5C3_ORYSJ Os05g0587200 Os05g0587200 OJ1007_H05.7 OSNPB_050587200 ENOG411DTYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q7XSU6,Q7XSU7,Q7XSU8,Q7XSU2 Q7XSU6_ORYSJ,Q7XSU7_ORYSJ,Q7XSU8_ORYSJ,Q7XSU2_ORYSJ Os04g0688600 Os04g0688600 OSJNBa0039K24.10 OSNPB_040688600,Os04g0688500 OsJ_16718 OSJNBa0039K24.9 OSNPB_040688500,Os04g0688300 OSJNBa0039K24.8 OSNPB_040688300,prx64 Os04g0689000 OsJ_16717 OSJNBa0039K24.14 OSNPB_040689000 ENOG411EA0N Q8LPM0,A8MQM0 Q8LPM0_ARATH,A8MQM0_ARATH Allyl alcohol dehydrogenase-like protein (At3g59840) (Zinc-binding dehydrogenase family protein),Zinc-binding dehydrogenase family protein ARA:AT3G59845-MONOMER; 38056,27052 Allyl alcohol dehydrogenase-like protein (At3g59840) (Zinc-binding dehydrogenase family protein),Zinc-binding dehydrogenase family protein oxidoreductase activity [GO:0016491],oxidation-reduction process [GO:0055114] locus:505006405; AT3G59845 Zinc-binding dehydrogenase NA NA NA NA NA NA NA ENOG411EA0F LRR-RLK,RHS16 C0LGR6,Q9M0D8,A0A1P8B426,F4JMW3 Y4291_ARATH,Q9M0D8_ARATH,A0A1P8B426_ARATH,F4JMW3_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g29180 (EC 2.7.11.1),Leucine-rich repeat protein kinase (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase) (Serine/threonine-specific receptor protein kinase-like protein),Root hair specific 16 2.7.11.1 101593,96558,101310,101572 Probable LRR receptor-like serine/threonine-protein kinase At4g29180 (EC 2.7.11.1),Leucine-rich repeat protein kinase (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase) (Serine/threonine-specific receptor protein kinase-like protein),Root hair specific 16 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2119896;,locus:2118344; AT4G29180,AT4G29450 Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EA0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein expressed F-box domain containing protein, expressed (Os11g0593600 protein) (cDNA clone:J023113K16, full insert sequence),F-box domain containing protein, expressed (Os11g0593700 protein),Os08g0164600 protein Q2R1T4,Q2R1T3,A0A0P0XBZ7 Q2R1T4_ORYSJ,Q2R1T3_ORYSJ,A0A0P0XBZ7_ORYSJ Os11g0593600 LOC_Os11g38130 Os11g0593600 OSNPB_110593600,LOC_Os11g38140 Os11g0593700 OsJ_34472 OSNPB_110593700,Os08g0164600 OSNPB_080164600 ENOG411EA0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ccr4-Not transcription complex NA NA NA NA NA NA NA ENOG411EA0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EA0Z ERD6 O04036 ERD6_ARATH Sugar transporter ERD6 (Early-responsive to dehydration protein 6) (Sugar transporter-like protein 1) FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 54355 Sugar transporter ERD6 (Early-responsive to dehydration protein 6) (Sugar transporter-like protein 1) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar transmembrane transporter activity [GO:0051119]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:2036084; AT1G08930 early response to dehydration 6 NA NA NA NA NA NA NA ENOG411EA0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjC domain hydroxylase NA NA NA NA NA NA NA ENOG411EA0Y HERK1 Q9LX66,Q9FN92 HERK_ARATH,Y5597_ARATH Receptor-like protein kinase HERK 1 (EC 2.7.11.-) (Protein HERCULES RECEPTOR KINASE 1),Probable receptor-like protein kinase At5g59700 (EC 2.7.11.-) DISRUPTION PHENOTYPE: No visible phenotype; due to redundancy with THE1. Herk1 and the1 double mutants are stunted. In herk1-1, shorter hypocotyls without brassinolide (BL) treatment than with BL treatment. {ECO:0000269|PubMed:19383785}. FUNCTION: Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner. {ECO:0000269|PubMed:19383785}. 2.7.11.- 91468,91964 Receptor-like protein kinase HERK 1 (EC 2.7.11.-) (Protein HERCULES RECEPTOR KINASE 1),Probable receptor-like protein kinase At5g59700 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; response to brassinosteroid [GO:0009741]; unidimensional cell growth [GO:0009826],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in most vegetative tissues, including leaves, stems and roots, especially in cell elongation regions. {ECO:0000269|PubMed:19383785}. locus:2075346;,locus:2174249; AT3G46290,AT5G59700 Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411EA0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Matrixin NA NA NA NA NA NA NA ENOG411EA0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase OSJNBa0081L15.5 protein (Os04g0483500 protein) (cDNA clone:001-019-E03, full insert sequence),Os02g0597900 protein (Fragment) Q7XQF8,A0A0P0VLC3 Q7XQF8_ORYSJ,A0A0P0VLC3_ORYSJ Os04g0483500 Os04g0483500 OsJ_15231 OSJNBa0081L15.5 OSNPB_040483500,Os02g0597900 OSNPB_020597900 ENOG411EA0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0644600 protein (Retrotransposon protein, putative, unclassified, expressed) Q2R0I2 Q2R0I2_ORYSJ Os11g0644600 LOC_Os11g42490 OSNPB_110644600 ENOG411EA0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family E3 ubiquitin-protein ligase (EC 2.3.2.27),Os05g0152700 protein A0A0P0WI27,A0A0P0WI76 A0A0P0WI27_ORYSJ,A0A0P0WI76_ORYSJ Os05g0152900 OSNPB_050152900,Os05g0152700 OSNPB_050152700 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411EA0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/calcium exchanger protein NA NA NA NA NA NA NA ENOG411EA0P P4H5 Q24JN5 P4H5_ARATH Prolyl 4-hydroxylase 5 (AtP4H5) (EC 1.14.11.2) DISRUPTION PHENOTYPE: Reduced root hair length and content of hydroxyproline in root cell walls. {ECO:0000269|PubMed:21680836}. FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. Possesses high affinity for leucine-rich repeat and proline-rich extensins of root cell walls that are essential for root hair development. Hydroxyprolines define the subsequent O-glycosylation sites by arabinosyltransferases which elongate the O-arabinosides on extensins. {ECO:0000269|PubMed:21680836}. ARA:AT2G17720-MONOMER; 1.14.11.2 32691 Prolyl 4-hydroxylase 5 (AtP4H5) (EC 1.14.11.2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656]; root hair cell development [GO:0080147] TISSUE SPECIFICITY: Expressed in epidermal root hair cells (trichoblasts). {ECO:0000269|PubMed:21680836}. locus:2827906; AT2G17720 P4Hc NA NA NA NA NA NA NA ENOG411EA0Q Q9M9P1 Q9M9P1_ARATH Alpha/beta-Hydrolases superfamily protein (T17B22.8 protein) 38317 Alpha/beta-Hydrolases superfamily protein (T17B22.8 protein) membrane [GO:0016020]; hydrolase activity [GO:0016787] locus:2097685; AT3G03230 Esterase lipase thioesterase family protein NA NA NA NA NA NA NA ENOG411DWIX RRP41 Q9SP08 RRP41_ARATH Exosome complex component RRP41 homolog (Ribosomal RNA-processing protein 41) (AtRRP41) (AtRrp41p) DISRUPTION PHENOTYPE: Aborted ovule development after the first mitosis. {ECO:0000269|PubMed:18160042}. FUNCTION: Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. In vitro, is a processive phosphorolytic exonuclease and requires a single-stranded poly(A) tail on the substrate RNA for its activity. Can complement the growth defect of a yeast mutant lacking RRP41 exonuclease (PubMed:10930416). Required for normal development of female gametophytes (PubMed:18160042). {ECO:0000269|PubMed:10930416, ECO:0000269|PubMed:18160042}. R-ATH-429958;R-ATH-450604;R-ATH-6791226; 26551 Exosome complex component RRP41 homolog (Ribosomal RNA-processing protein 41) (AtRRP41) (AtRrp41p) cytoplasmic exosome (RNase complex) [GO:0000177]; cytosol [GO:0005829]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; RNA binding [GO:0003723]; nuclear mRNA surveillance [GO:0071028]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; rRNA 3'-end processing [GO:0031125]; rRNA catabolic process [GO:0016075]; U4 snRNA 3'-end processing [GO:0034475] locus:2076710; AT3G61620 Exosome complex Os09g0252000 protein B9G2C8 B9G2C8_ORYSJ Os09g0252000 OsJ_28540 OSNPB_090252000 ENOG411DWIY Q9SY07 PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial 60133 Pentatricopeptide repeat-containing protein At4g02820, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2140220; AT4G02820 Pentatricopeptide repeat-containing protein Os12g0527900 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J013130A06, full insert sequence) (cDNA clone:J023149B10, full insert sequence) Q2QPI7 Q2QPI7_ORYSJ Os12g0527900 LOC_Os12g34340 OSNPB_120527900 ENOG411DWIZ T16K5.150 Q9FHP0,Q9M2X8 Q9FHP0_ARATH,Q9M2X8_ARATH BSD domain-containing protein (Uncharacterized protein At5g65910),AT3g49800/T16K5_150 (BSD domain-containing protein) (Uncharacterized protein T16K5.150) 48199,47511 BSD domain-containing protein (Uncharacterized protein At5g65910),AT3g49800/T16K5_150 (BSD domain-containing protein) (Uncharacterized protein T16K5.150) locus:2152044;,locus:2097375; AT5G65910,AT3G49800 BSD Os01g0766600 protein (Putative BSD protein) (cDNA clone:001-043-B06, full insert sequence) (cDNA clone:J033132M15, full insert sequence),Os05g0510700 protein (Fragment) Q5ZAN2,A0A0P0WPA0 Q5ZAN2_ORYSJ,A0A0P0WPA0_ORYSJ Os01g0766600 OSJNBb0053G03.8 OSNPB_010766600,Os05g0510700 OSNPB_050510700 ENOG411DWIP PCMP-E13 Q9FMA1 PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 59191 Pentatricopeptide repeat-containing protein At5g56310 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2161018; AT5G56310 Pentatricopeptide repeat-containing protein Os01g0260000 protein (Fragment) Q0JNX2 Q0JNX2_ORYSJ Os01g0260000 Os01g0260000 OSNPB_010260000 ENOG411DWIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formin-like protein Os01g0897700 protein (Fragment) A0A0P0VBL3 A0A0P0VBL3_ORYSJ Os01g0897700 OSNPB_010897700 ENOG411DWIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0821400 protein (Receptor protein kinase-like) (cDNA clone:J023055C13, full insert sequence) Q6K703 Q6K703_ORYSJ Os02g0821400 Os02g0821400 OJ1119_A01.8 OsJ_08912 OSNPB_020821400 P0474F11.23 ENOG411DWIS Q8LGE9 CSTR1_ARATH CMP-sialic acid transporter 1 (CMP-SA-Tr 1) (CMP-Sia-Tr 1) FUNCTION: Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi. {ECO:0000269|PubMed:18258224, ECO:0000269|PubMed:19822337}. 38212 CMP-sialic acid transporter 1 (CMP-SA-Tr 1) (CMP-Sia-Tr 1) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; sialic acid transmembrane transporter activity [GO:0015136]; sugar:proton symporter activity [GO:0005351]; sialic acid transport [GO:0015739] locus:2152955; AT5G41760 transporter CMP-sialic acid transporter 1 (CMP-SA-Tr 1) (CMP-Sia-Tr 1) (CMP-sialic acid transporter-like protein 1) (OsCSTLP1) Q654D9 CSTR1_ORYSJ CSTLP1 Os06g0523400 LOC_Os06g33210 OsJ_21524 OSJNBa0009J19.27 FUNCTION: Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi. May transport important nucleotide sugars such as CMP-Kdo (2-keto-3-deoxy-D-manno-octulosonic acid) in physiological conditions. {ECO:0000269|PubMed:19822337}. ENOG411DWIT EBP2 Q9LUJ5 EBP2_ARATH Probable rRNA-processing protein EBP2 homolog FUNCTION: Required for the processing of the 27S pre-rRNA (By similarity). Plays an important role in plant growth and senescence by modulating ribosome biogenesis in nucleolus. Associates with ribosomes (PubMed:26163696). {ECO:0000250|UniProtKB:P36049, ECO:0000269|PubMed:26163696}. R-ATH-6791226; 33206 Probable rRNA-processing protein EBP2 homolog nuclear periphery [GO:0034399]; nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; GTPase activity [GO:0003924]; RNA binding [GO:0003723]; ribosomal large subunit biogenesis [GO:0042273]; rRNA processing [GO:0006364] locus:2094384; AT3G22660 rRNA-processing protein EBP2 Os07g0475800 protein (Putative EBNA1-binding protein homolog Ebp2p) (cDNA clone:J023075L15, full insert sequence) Q84RU7 Q84RU7_ORYSJ P0571D04.124 Os07g0475800 OsJ_24216 OSNPB_070475800 ENOG411DWIU CUV F4K2E9 PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP16) (Protein CLUMSY VEIN) (Protein EMBRYO DEFECTIVE 3011) (Protein PSR1-INTERACTING PROTEIN 1) DISRUPTION PHENOTYPE: Narrow rosette leaves with altered venation pattern. {ECO:0000269|PubMed:25384462}. Embryo defective; Preglobular-D. Meinke-2004 FUNCTION: Involved in pre-mRNA splicing by mediating structural transitions of the spliceosome during the catalytic step. Facilitates expression of genes involved in auxin-mediated development including male-gametophyte transmission, apical-basal patterning of embryonic and gynoecium development, stamen development, phyllotactic flower positioning, and vascular development (PubMed:25384462). Also involved in root-meristem maintenance and planar polarity of root-hair positioning (PubMed:26237376). Acts as a component of RNA silencing that regulates distinct classes of endogenous small RNAs. Functions as a positive regulator of plant immunity (PubMed:25902521). {ECO:0000269|PubMed:25384462, ECO:0000269|PubMed:25902521, ECO:0000269|PubMed:26237376}. MISCELLANEOUS: Silencing of PINP1 renders defects in small RNA accumulation, developmental defects and hypersensitivity to Phytophthora infection. {ECO:0000269|PubMed:25902521}. R-ATH-72163; 3.6.4.13 141860 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP16) (Protein CLUMSY VEIN) (Protein EMBRYO DEFECTIVE 3011) (Protein PSR1-INTERACTING PROTEIN 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; defense response to fungus, incompatible interaction [GO:0009817]; embryo development ending in seed dormancy [GO:0009793]; gene expression [GO:0010467]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of RNA splicing [GO:0033120]; primary miRNA processing [GO:0031053]; regulation of transcription, DNA-templated [GO:0006355]; RNA interference [GO:0016246]; RNA splicing [GO:0008380]; root development [GO:0048364]; root hair elongation [GO:0048767]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051] DEVELOPMENTAL STAGE: Preferentially expressed in developing organs. {ECO:0000269|PubMed:25384462}. locus:2182340; AT5G13010 Pre-mRNA-splicing factor ATP-dependent RNA helicase Os07g0508000 protein (Putative DEAH-box RNA helicase) Q7XIR8 Q7XIR8_ORYSJ OJ1163_G04.102 Os07g0508000 OSNPB_070508000 ENOG411DWIV A_TM018A10.1 Q8GXX5 Q8GXX5_ARATH At4g00980 (Uncharacterized protein At4g00980/A_TM018A10_1) (Zinc knuckle (CCHC-type) family protein) 55063 At4g00980 (Uncharacterized protein At4g00980/A_TM018A10_1) (Zinc knuckle (CCHC-type) family protein) DNA binding [GO:0003677]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2134618; AT4G00980 ZnF_C2HC NA NA NA NA NA NA NA ENOG411DWIW ASNAP1,ASNAP2,ALPHA-SNAP2 Q9LXZ5,Q9SPE6,F4IZC8 SNAA1_ARATH,SNAA2_ARATH,F4IZC8_ARATH Alpha-soluble NSF attachment protein 1 (Alpha-SNAP1) (N-ethylmaleimide-sensitive factor attachment protein alpha 1),Alpha-soluble NSF attachment protein 2 (Alpha-SNAP2) (N-ethylmaleimide-sensitive factor attachment protein alpha 2),Alpha-soluble NSF attachment protein 2 FUNCTION: Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it (By similarity). {ECO:0000250}. R-ATH-204005;R-ATH-6807878;R-ATH-6811438;R-ATH-6811440; 43881,32755,27250 Alpha-soluble NSF attachment protein 1 (Alpha-SNAP1) (N-ethylmaleimide-sensitive factor attachment protein alpha 1),Alpha-soluble NSF attachment protein 2 (Alpha-SNAP2) (N-ethylmaleimide-sensitive factor attachment protein alpha 2),Alpha-soluble NSF attachment protein 2 plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; vacuolar membrane [GO:0005774]; soluble NSF attachment protein activity [GO:0005483]; syntaxin binding [GO:0019905]; intracellular protein transport [GO:0006886]; membrane fusion [GO:0061025]; SNARE complex disassembly [GO:0035494],membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; SNARE complex [GO:0031201]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; soluble NSF attachment protein activity [GO:0005483]; syntaxin binding [GO:0019905]; intracellular protein transport [GO:0006886]; membrane fusion [GO:0061025]; SNARE complex disassembly [GO:0035494],intracellular [GO:0005622]; intracellular protein transport [GO:0006886] locus:2102494;,locus:2078366; AT3G56450,AT3G56190 Alpha-soluble NSF attachment NA NA NA NA NA NA NA ENOG411DWIH PCMP-E4 Q9LR69 PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540 67402 Pentatricopeptide repeat-containing protein At1g03540 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2020703; AT1G03540 Pentatricopeptide repeat-containing protein Os06g0611200 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q69XF8 Q69XF8_ORYSJ P0490F09.35 Os06g0611200 OSNPB_060611200 ENOG411DWII Q9LYZ9 PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 92083 Pentatricopeptide repeat-containing protein At5g02860 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2151281; AT5G02860 Pentatricopeptide repeat-containing protein Os07g0590600 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6ZLH4 Q6ZLH4_ORYSJ Os07g0590600 OJ1174_G05.19 OSNPB_070590600 ENOG411DWIJ Q9SVG7 BBE17_ARATH Berberine bridge enzyme-like 17 (AtBBE-like 17) (EC 1.1.1.-) ARA:AT4G20800-MONOMER; 1.1.1.- 58847 Berberine bridge enzyme-like 17 (AtBBE-like 17) (EC 1.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2121509; AT4G20800 domain-containing protein NA NA NA NA NA NA NA ENOG411DWIK MYB48,MYB59 Q9LX82,Q4JL84,F4J7Y0 MYB48_ARATH,MYB59_ARATH,F4J7Y0_ARATH Transcription factor MYB48 (Myb-related protein 48) (AtMYB48),Transcription factor MYB59 (Myb-related protein 59) (AtMYB59),Myb domain protein 48 Long roots-S. Chen-2009 FUNCTION: Transcription factor. {ECO:0000305}. 29654,27237,27163 Transcription factor MYB48 (Myb-related protein 48) (AtMYB48),Transcription factor MYB59 (Myb-related protein 59) (AtMYB59),Myb domain protein 48 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to cadmium ion [GO:0046686]; response to chitin [GO:0010200]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.,TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. locus:2075236;,locus:2174324; AT3G46130,AT5G59780 Transcription factor Myb-related protein MYBAS2 Q4JL76 MYBA2_ORYSJ MYBAS2 MYB17 Os12g0567300 LOC_Os12g37970 FUNCTION: Transcription factor. {ECO:0000305}. ENOG411DWIM GCP4 Q9M350,A0A1I9LLT8,A0A1I9LLT7 GACP4_ARATH,A0A1I9LLT8_ARATH,A0A1I9LLT7_ARATH Gamma-tubulin complex component 4 (AtGCP4) (GCP-4),Gamma-tubulin complex component Dwarf; Sterile-B. Liu-2010 FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000250}.; FUNCTION: Gamma-tubulin complex is essential for the control of microtubular network remodeling in the course of initiation and development of giant-feeding cells, and for the successful reproduction of nematodes (e.g. Meloidogyne spp.) in their plant hosts (By similarity). {ECO:0000250}.,FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000256|RuleBase:RU363050}. 85907,80601,82675 Gamma-tubulin complex component 4 (AtGCP4) (GCP-4),Gamma-tubulin complex component equatorial microtubule organizing center [GO:0000923]; gamma-tubulin complex [GO:0000930]; microtubule [GO:0005874]; plasmodesma [GO:0009506]; spindle [GO:0005819]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; structural constituent of cytoskeleton [GO:0005200]; cortical microtubule organization [GO:0043622]; growth [GO:0040007]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; meiotic cell cycle [GO:0051321]; microtubule nucleation [GO:0007020]; mitotic spindle assembly [GO:0090307]; response to nematode [GO:0009624],cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule organizing center [GO:0005815]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; microtubule nucleation [GO:0007020] locus:2084430; AT3G53760 gamma-tubulin complex component 4 Gamma-tubulin complex component Q60F24 Q60F24_ORYSJ Os05g0154500 OSJNBa0059G01.11 OSNPB_050154500 FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000256|RuleBase:RU363050}. ENOG411DWIN Q84JZ4,F4K6Y8,F4K6Y9 Q84JZ4_ARATH,F4K6Y8_ARATH,F4K6Y9_ARATH Homoserine dehydrogenase (HDH) (EC 1.1.1.3) PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 3/3. {ECO:0000256|RuleBase:RU000579}.; PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 3/5. {ECO:0000256|RuleBase:RU000579}. 1.1.1.3 40413,40670,40669 Homoserine dehydrogenase (HDH) (EC 1.1.1.3) homoserine dehydrogenase activity [GO:0004412]; isoleucine biosynthetic process [GO:0009097]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088],chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; aspartate kinase activity [GO:0004072]; homoserine dehydrogenase activity [GO:0004412]; aspartate family amino acid biosynthetic process [GO:0009067]; homoserine biosynthetic process [GO:0009090]; isoleucine biosynthetic process [GO:0009097]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088] locus:2178998; AT5G21060 homoserine dehydrogenase Homoserine dehydrogenase (HDH) (EC 1.1.1.3) Q2RB23,Q2QYB7 Q2RB23_ORYSJ,Q2QYB7_ORYSJ LOC_Os11g03470 Os11g0128800 OsJ_32797 OSNPB_110128800,LOC_Os12g03190 Os12g0125400 OsJ_35070 OSNPB_120125400 ENOG411DWIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os05g0368700 protein (Fragment) Q0DIR5 Q0DIR5_ORYSJ Os05g0368700 Os05g0368700 OSNPB_050368700 ENOG411DWIB LIL3.2,LIL3.1 Q6NKS4,Q9SYX1 LIL32_ARATH,LIL31_ARATH Light-harvesting complex-like protein 3 isotype 2, chloroplastic (LHC-like protein 3 isoform 2),Light-harvesting complex-like protein 3 isotype 1, chloroplastic (LHC-like protein 3 isoform 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants lli3:1 and lli3:2 are dwarf with yellowish green leaves. {ECO:0000269|PubMed:20823244}. FUNCTION: Light-harvesting-like protein required for biosynthesis of phytylated chlorophylls and alpha-tocopherol in green seedlings. Functions by anchoring geranylgeranyl reductase (GGR) in the thylakoid membrane, leading to the stabilization of GGR activity (PubMed:20823244, PubMed:24275650). Binds chlrophyll a in the thylakoid membrane (PubMed:26320415). Plays a role in the regulation of chlorophyll biosynthesis under light stress and under standard growth conditions (PubMed:25808681). {ECO:0000269|PubMed:20823244, ECO:0000269|PubMed:24275650, ECO:0000269|PubMed:25808681, ECO:0000269|PubMed:26320415}.,FUNCTION: Light-harvesting-like protein required for biosynthesis of phytylated chlorophylls and alpha-tocopherol in green seedlings. Functions by anchoring geranylgeranyl reductase (GGR) in the thylakoid membrane, leading to the stabilization of GGR activity (PubMed:20823244, PubMed:24275650). Binds chlrophyll a in the thylakoid membrane (By similarity). Plays a role in the regulation of chlorophyll biosynthesis under light stress and under standard growth conditions (PubMed:25808681). {ECO:0000250|UniProtKB:Q6NKS4, ECO:0000269|PubMed:20823244, ECO:0000269|PubMed:24275650, ECO:0000269|PubMed:25808681}. 28601,29403 Light-harvesting complex-like protein 3 isotype 2, chloroplastic (LHC-like protein 3 isoform 2),Light-harvesting complex-like protein 3 isotype 1, chloroplastic (LHC-like protein 3 isoform 1) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; thylakoid membrane [GO:0042651]; chlorophyll binding [GO:0016168]; enzyme binding [GO:0019899]; identical protein binding [GO:0042802]; protein anchor [GO:0043495]; substrate-specific transmembrane transporter activity [GO:0022891]; photosynthesis [GO:0015979]; positive regulation of chlorophyll biosynthetic process [GO:1902326]; positive regulation of phytol biosynthetic process [GO:1904964]; positive regulation of vitamin E biosynthetic process [GO:1904966]; protein-chromophore linkage [GO:0018298]; transmembrane transport [GO:0055085],chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; thylakoid membrane [GO:0042651]; chlorophyll binding [GO:0016168]; enzyme binding [GO:0019899]; identical protein binding [GO:0042802]; protein anchor [GO:0043495]; substrate-specific transmembrane transporter activity [GO:0022891]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; photosynthesis [GO:0015979]; positive regulation of chlorophyll biosynthetic process [GO:1902326]; positive regulation of phytol biosynthetic process [GO:1904964]; positive regulation of vitamin E biosynthetic process [GO:1904966]; protein-chromophore linkage [GO:0018298]; regulation of transcription, DNA-templated [GO:0006355]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in photosynthetically active tissues (at protein level). {ECO:0000269|PubMed:25808681}. locus:2151972;,locus:2129296; AT5G47110,AT4G17600 Lil3 protein Os02g0125700 protein (cDNA clone:J023078I12, full insert sequence) B7EIQ8 B7EIQ8_ORYSJ Os02g0125700 OSNPB_020125700 ENOG411DWIC FUT13 Q9C8W3 FUT13_ARATH Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M) (FucTC) (Fucosyltransferase 13) (AtFUT13) (Galactoside 3(4)-L-fucosyltransferase) FUNCTION: May be involved in cell wall synthesis. Catalyzes alpha-1,4 glycosidic linkages and generates Lewis-a epitopes. PATHWAY: Protein modification; protein glycosylation. 2.4.1.214; 2.4.1.- 45098 Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M) (FucTC) (Fucosyltransferase 13) (AtFUT13) (Galactoside 3(4)-L-fucosyltransferase) Golgi cisterna membrane [GO:0032580]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; alpha-(1->3)-fucosyltransferase activity [GO:0046920]; fucosyltransferase activity [GO:0008417]; cell wall organization [GO:0071555]; Lewis a epitope biosynthetic process [GO:0010493]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Present in root, stem, flower buds and green siliques. locus:2016054; AT1G71990 Alpha-(14)-fucosyltransferase Os12g0170600 protein (Fragment),OSJNBa0084A10.15 protein (Os04g0432300 protein) Q0IPS4,Q7XQP0 Q0IPS4_ORYSJ,Q7XQP0_ORYSJ Os12g0170600 Os12g0170600 OSNPB_120170600,OSJNBa0084A10.15 Os04g0432300 OsJ_14859 OSNPB_040432300 ENOG411DWID FLXL1 Q93V84 FLXL1_ARATH Protein FLX-like 1 (AtFLXL1) DISRUPTION PHENOTYPE: No suppression of FRI activity. {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. FUNCTION: Has no transcriptional activation activity. {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. 36745 Protein FLX-like 1 (AtFLXL1) cell differentiation [GO:0030154]; flower development [GO:0009908] locus:2089616; AT3G14750 NA Myosin-like protein (Os07g0508200 protein) (cDNA clone:J023039M07, full insert sequence) Q7XIR7 Q7XIR7_ORYSJ OJ1163_G04.104 Os07g0508200 OSNPB_070508200 ENOG411DWIE PBL15 Q9SY91 PBL15_ARATH Probable serine/threonine-protein kinase PBL15 (EC 2.7.11.1) (PBS1-like protein 15) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 47123 Probable serine/threonine-protein kinase PBL15 (EC 2.7.11.1) (PBS1-like protein 15) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2200863; AT1G61590 serine threonine-protein kinase At5g01020-like Os03g0364400 protein (Protein kinase APK1A, chloroplast, putative, expressed) (cDNA clone:J013073L01, full insert sequence) Q10KZ7 Q10KZ7_ORYSJ Os03g0364400 LOC_Os03g24930 Os03g0364400 OSNPB_030364400 ENOG411DWIF ABCG8,ABCG4 Q9FLX5,Q9SW08 AB8G_ARATH,AB4G_ARATH ABC transporter G family member 8 (ABC transporter ABCG.8) (AtABCG8) (Probable white-brown complex homolog protein 8) (AtWBC8),ABC transporter G family member 4 (ABC transporter ABCG.4) (AtABCG4) (White-brown complex homolog protein 4) (AtWBC4) R-ATH-1369062; 65934,64690 ABC transporter G family member 8 (ABC transporter ABCG.8) (AtABCG8) (Probable white-brown complex homolog protein 8) (AtWBC8),ABC transporter G family member 4 (ABC transporter ABCG.4) (AtABCG4) (White-brown complex homolog protein 4) (AtWBC4) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2176937;,locus:2117507; AT5G52860,AT4G25750 ABC transporter G family member Os06g0503100 protein (Putative ABCG4) Q656J6 Q656J6_ORYSJ Os06g0503100 Os06g0503100 OSNPB_060503100 P0564B04.13 ENOG411DWIG SEN2,SEN1 Q9LSS3,Q9M1E8,Q2V3Q6,F4JYW0 SEN22_ARATH,SEN21_ARATH,Q2V3Q6_ARATH,F4JYW0_ARATH tRNA-splicing endonuclease subunit Sen2-2 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2-2) (AtSen2),tRNA-splicing endonuclease subunit Sen2-1 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2-1) (AtSen1),tRNA-intron endonuclease,Splicing endonuclease 2 FUNCTION: Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage (By similarity). {ECO:0000250}. 4.6.1.16; 4.6.1.16 28519,27359,13994,29092 tRNA-splicing endonuclease subunit Sen2-2 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2-2) (AtSen2),tRNA-splicing endonuclease subunit Sen2-1 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2-1) (AtSen1),tRNA-intron endonuclease,Splicing endonuclease 2 tRNA-intron endonuclease complex [GO:0000214]; lyase activity [GO:0016829]; tRNA-intron endonuclease activity [GO:0000213]; mRNA processing [GO:0006397]; tRNA-type intron splice site recognition and cleavage [GO:0000379],tRNA-intron endonuclease complex [GO:0000214]; tRNA-intron endonuclease activity [GO:0000213]; tRNA-type intron splice site recognition and cleavage [GO:0000379],nuclease activity [GO:0004518]; tRNA-intron endonuclease activity [GO:0000213]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388] locus:2085687;,locus:1009023257;,locus:2144060; AT5G60230,AT3G45590,AT3G45577 Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2'3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites but the intron is invariably located at the same site in the gene placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage (By similarity) Probable tRNA-splicing endonuclease subunit Sen2 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2),Os11g0602400 protein (cDNA clone:006-206-E08, full insert sequence) (tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed),Os06g0530700 protein (Fragment) Q5Z6B1,Q2R1K2,A0A0P0WXN3 SEN2_ORYSJ,Q2R1K2_ORYSJ,A0A0P0WXN3_ORYSJ Os06g0530700 LOC_Os06g33980 P0410C01.17 P0438E12.38,LOC_Os11g38930 Os11g0602400 OsJ_34425 OSNPB_110602400,Os06g0530700 OSNPB_060530700 FUNCTION: Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage (By similarity). {ECO:0000250}. ENOG411DWI8 DHAD Q9LIR4 ILVD_ARATH Dihydroxy-acid dehydratase, chloroplastic (AtDHAD) (DAD) (EC 4.2.1.9) FUNCTION: Catalyzes the dehydration of 2,3-dihydroxy-3-isovalerate or 2,3-dihydroxy-3-methylvalerate to the 2-oxo acids 3-methyl-2-oxobutanoate (3MOB) or 3-methyl-2-oxopentanoate (3MOP). {ECO:0000303|PubMed:12242394}. PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4. {ECO:0000255|HAMAP-Rule:MF_00012}.; PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4. {ECO:0000255|HAMAP-Rule:MF_00012}. ARA:AT3G23940-MONOMER; 4.2.1.9 64914 Dihydroxy-acid dehydratase, chloroplastic (AtDHAD) (DAD) (EC 4.2.1.9) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 4 iron, 4 sulfur cluster binding [GO:0051539]; copper ion binding [GO:0005507]; dihydroxy-acid dehydratase activity [GO:0004160]; hydro-lyase activity [GO:0016836]; branched-chain amino acid biosynthetic process [GO:0009082]; embryo sac development [GO:0009553]; isoleucine biosynthetic process [GO:0009097]; pollen development [GO:0009555]; response to salt stress [GO:0009651]; root development [GO:0048364]; valine biosynthetic process [GO:0009099] locus:2076116; AT3G23940 dehydratase Os08g0559600 protein (Putative dihydroxy-acid dehydratase) (cDNA clone:J033082L10, full insert sequence) (cDNA clone:J033121I10, full insert sequence) Q6YZH8 Q6YZH8_ORYSJ Os08g0559600 OsJ_28278 OSNPB_080559600 P0562A06.23 ENOG411DWI9 MYB58 Q9SA47,A0A1P8AQA1 MYB58_ARATH,A0A1P8AQA1_ARATH Transcription factor MYB58 (Myb-related protein 58) (AtMYB58),Myb domain protein 58 DISRUPTION PHENOTYPE: Reduction in secondary wall thickening and lignin content. {ECO:0000269|PubMed:19122102}. FUNCTION: Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. 31461,23398 Transcription factor MYB58 (Myb-related protein 58) (AtMYB58),Myb domain protein 58 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; lignin biosynthetic process [GO:0009809]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to light stimulus [GO:0009416]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: In nonelongating internodes, highly expressed in interfascicular fibers and xylem cells but not in parenchymatous pith cells. In elongating internodes, predominantly expressed in protoxylem vessels. {ECO:0000269|PubMed:19122102}. TISSUE SPECIFICITY: Expressed in leaves (PubMed:9839469). Specifically expressed in fibers and vessels undergoing secondary wall thickening, especially in inflorescence stems (PubMed:19122102). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:9839469}. locus:2032860; AT1G16490 Transcription factor Os02g0695200 protein (Putative myb-related protein 1) Q6YUQ6 Q6YUQ6_ORYSJ Os02g0695200 B1053A04.9 OsJ_08015 OSNPB_020695200 P0017H11.31 ENOG411DWI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA subtilisin-like Os01g0278950 protein (Putative subtilisin-like protein) Q9LJ20 Q9LJ20_ORYSJ P0025D05.29 Os01g0278950 OSNPB_010278950 ENOG411DWI1 PDE331 Q9ZU48,Q9LJQ7 Q9ZU48_ARATH,Q9LJQ7_ARATH Expressed protein (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein At2g01190),At3g18230 (Octicosapeptide/Phox/Bem1p family protein) Seedling lethal (inferred from pigment defect); Albino embryos-D. Meinke-2011 77337,70992 Expressed protein (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein At2g01190),At3g18230 (Octicosapeptide/Phox/Bem1p family protein) cytosol [GO:0005829]; nucleus [GO:0005634] locus:2038836;,locus:2089648; AT2G01190,AT3G18230 PB1 domain containing protein expressed Os01g0139200 protein,Os01g0139200 protein (Fragment) Q5ZDH9,A0A0N7KCA9 Q5ZDH9_ORYSJ,A0A0N7KCA9_ORYSJ Os01g0139200 Os01g0139200 OsJ_00306 OSNPB_010139200 P0480E02.3,Os01g0139200 OSNPB_010139200 ENOG411DWI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os04g0301700 protein A0A0P0W8A9 A0A0P0W8A9_ORYSJ Os04g0301700 OSNPB_040301700 ENOG411DWI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os02g0503900 protein (Putative cytochrome P450) (cDNA clone:J023021D15, full insert sequence),Os02g0503700 protein,Os02g0503850 protein Q6K661,A0A0P0VJE3,A0A0P0VJD6 Q6K661_ORYSJ,A0A0P0VJE3_ORYSJ,A0A0P0VJD6_ORYSJ Os02g0503900 Os02g0503900 OJ1003_F04.10 OSNPB_020503900,Os02g0503700 OSNPB_020503700,Os02g0503850 OSNPB_020503850 ENOG411DWI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-box protein NA NA NA NA NA NA NA ENOG411DWI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) AAA ATPase-like (Os06g0697500 protein) Q5Z6G2 Q5Z6G2_ORYSJ Os06g0697500 OSNPB_060697500 P0028E05.29 ENOG411DWI6 ALG11 Q9XEE9 ALG11_ARATH GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase (EC 2.4.1.131) (Alpha-1,2-mannosyltransferase ALG11) (Asparagine-linked glycosylation protein 11) (Protein LEAF WILTING 3) DISRUPTION PHENOTYPE: Lethality. {ECO:0000269|PubMed:19732381}. leaf-wilting; when grown at 21-22C mutant plants are smaller have shorter siliques and are less fertile than the wild-type plants. Growth phenotype is partially rescued at higher temperatures (25-26C); collapsed xylem with reduced cellulose content; more sensitive to osmotic stress and ABA. Dwarf; Wilted leaves; Reduced fertility; Collapsed xylem; Low cellulose levels-Z. Gong-2009 FUNCTION: Required for N-linked oligosaccharide assembly. Has a role in the last step of the synthesis of the Man(5)GlcNAc(2)-PP-dolichol core oligosaccharide on the cytoplasmic face of the endoplasmic reticulum. {ECO:0000269|PubMed:19732381}. MISCELLANEOUS: In the absence of ALG11 activity, no N-glycans are produced and transferred to proteins. PATHWAY: Protein modification; protein glycosylation. 2.4.1.131 52573 GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase (EC 2.4.1.131) (Alpha-1,2-mannosyltransferase ALG11) (Asparagine-linked glycosylation protein 11) (Protein LEAF WILTING 3) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity [GO:0004377]; oligosaccharide-lipid intermediate biosynthetic process [GO:0006490]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation in endoplasmic reticulum [GO:0033577]; protein N-linked glycosylation [GO:0006487]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Expressed in shoots, leaves, sepals, filaments, siliques, stems, roots and guard cells. {ECO:0000269|PubMed:19732381}. locus:2065080; AT2G40190 Glycosyl transferase Os12g0583000 protein (Fragment) A0A0N7KUA0 A0A0N7KUA0_ORYSJ Os12g0583000 OSNPB_120583000 ENOG411DWI7 O65655 O65655_ARATH SAP domain-containing protein (Uncharacterized protein AT4g39680) 69442 SAP domain-containing protein (Uncharacterized protein AT4g39680) chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleic acid binding [GO:0003676] locus:2135262; AT4G39680 SAP domain containing protein Os03g0383800 protein (Fragment),AcinusL protein-like (Os07g0626200 protein),Os07g0626200 protein (Fragment) Q0DRH6,Q7XIG8,A0A0P0X924 Q0DRH6_ORYSJ,Q7XIG8_ORYSJ,A0A0P0X924_ORYSJ Os03g0383800 Os03g0383800 OSNPB_030383800,OJ1339_F05.120-1 Os07g0626200 OSNPB_070626200,Os07g0626200 OSNPB_070626200 ENOG411EEMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TatD related DNase NA NA NA NA NA NA NA ENOG411EJTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA Polymerase NA NA NA NA NA NA NA ENOG411EJTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nucleoporin NA NA NA NA NA NA NA ENOG411EJTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription mediator complex subunit Med12 NA NA NA NA NA NA NA ENOG411EJTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GRB10 interacting GYF protein Os01g0924600 protein (Fragment) Q0JGG6 Q0JGG6_ORYSJ Os01g0924600 Os01g0924600 OSNPB_010924600 ENOG411EJTD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os09g0573000 protein Q0IZE8 Q0IZE8_ORYSJ Os09g0573000 OSNPB_090573000 ENOG411EJTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EJTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 NA NA NA NA NA NA NA ENOG411EJTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJTH Q9ZPS1,Q9SL07 FB94_ARATH,Q9SL07_ARATH Putative F-box protein At2g02030,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g05600) 37978,27180 Putative F-box protein At2g02030,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g05600) locus:2041115;,locus:2058994; AT2G02030,AT2G05600 FBOX NA NA NA NA NA NA NA ENOG411EJTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJTJ MUD21.8 F4K253 F4K253_ARATH Transmembrane protein 57254 Transmembrane protein integral component of membrane [GO:0016021]; membrane [GO:0016020] locus:2175024; AT5G66820 NA NA NA NA NA NA NA NA ENOG411EJTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon NA NA NA NA NA NA NA ENOG411EJTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EJTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjN NA NA NA NA NA NA NA ENOG411EJTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Insulin-induced protein (INSIG) NA NA NA NA NA NA NA ENOG411EJTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Origin recognition complex subunit NA NA NA NA NA NA NA ENOG411EJTU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Telo_bind NA NA NA NA NA NA NA ENOG411EJTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function N-terminal domain (DUF2450) NA NA NA NA NA NA NA ENOG411EJTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of Vps4 activity in the MVB pathway NA NA NA NA NA NA NA ENOG411EJTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EJTZ Q9LNT6,A0A1P8AVE0,F4I0P9,B3H786 Q9LNT6_ARATH,A0A1P8AVE0_ARATH,F4I0P9_ARATH,B3H786_ARATH DNA ligase-like protein (T20H2.11 protein) (Uncharacterized protein At1g20100),DNA ligase,DNA ligase-like protein 32170,42915,33391,24397 DNA ligase-like protein (T20H2.11 protein) (Uncharacterized protein At1g20100),DNA ligase,DNA ligase-like protein ligase activity [GO:0016874] locus:2198556;,locus:2204440; AT1G20100,AT1G75860 NA NA NA NA NA NA NA NA ENOG411EJT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAC2 family NA NA NA NA NA NA NA ENOG411EJT3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulase (glycosyl hydrolase family 5) NA NA NA NA NA NA NA ENOG411EJT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJT4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: E3 ubiquitin- protein ligase NA NA NA NA NA NA NA ENOG411EJT6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Beige BEACH domain containing protein Os02g0663300 protein,Os04g0555600 protein (Fragment) A0A0P0VMT1,A0A0N7KJH4 A0A0P0VMT1_ORYSJ,A0A0N7KJH4_ORYSJ Os02g0663300 OSNPB_020663300,Os04g0555600 OSNPB_040555600 ENOG411EJT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein (DUF2215) NA NA NA NA NA NA NA ENOG411EJT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Topoisomerase DNA binding C4 zinc finger NA NA NA NA NA NA NA ENOG411DXSR MZF18.3 Q9FLV4,A0A1P8BBY8 Y5248_ARATH,A0A1P8BBY8_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 (EC 2.7.11.1),Protein kinase superfamily protein 2.7.11.1 97311,83326 G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 (EC 2.7.11.1),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] AT5G24080 G-type lectin S-receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411E5KP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DRW3 Q8GY46,F4IQ39,A0A1P8AZZ9 Q8GY46_ARATH,F4IQ39_ARATH,A0A1P8AZZ9_ARATH At5g13560 (Structural maintenance of chromosomes protein) (Uncharacterized protein At5g13560/MSH12_2),Centrosomal protein of 135 kDa-like protein 76651,75857,60024 At5g13560 (Structural maintenance of chromosomes protein) (Uncharacterized protein At5g13560/MSH12_2),Centrosomal protein of 135 kDa-like protein cytosol [GO:0005829] locus:2173164;,locus:2049821; AT5G13560,AT2G37370 expressed protein Os05g0162200 protein,Expressed protein (Os03g0281300 protein),Os01g0155400 protein (Fragment) C7J2K8,Q10N63,A0A0P0WIK5,A0A0P0UYD8 C7J2K8_ORYSJ,Q10N63_ORYSJ,A0A0P0WIK5_ORYSJ,A0A0P0UYD8_ORYSJ Os05g0162200 Os05g0162200 OSNPB_050162200,LOC_Os03g17270 Os03g0281300 OSNPB_030281300,Os05g0162200 OSNPB_050162200,Os01g0155400 OSNPB_010155400 ENOG411DRW2 O04589,F4HX60 O04589_ARATH,F4HX60_ARATH F19K23.17 protein (Orotidine 5'-phosphate decarboxylase) (Uncharacterized protein At1g62250),Orotidine 5'-phosphate decarboxylase 30141,25234 F19K23.17 protein (Orotidine 5'-phosphate decarboxylase) (Uncharacterized protein At1g62250),Orotidine 5'-phosphate decarboxylase locus:2018082; AT1G62250 NA Expressed protein (Os03g0744700 protein) (cDNA clone:J023083K21, full insert sequence) Q84MP5 Q84MP5_ORYSJ OSJNBb0036F07.14 LOC_Os03g53300 Os03g0744700 OSNPB_030744700 ENOG411DRW1 ycf2-A; ycf2-B P56786 YCF2_ARATH Protein Ycf2 FUNCTION: Probable ATPase of unknown function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis. 269566 Protein Ycf2 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ATP binding [GO:0005524]; protein import into chloroplast stroma [GO:0045037] locus:504954480;locus:504954709; ATCG00860ATCG01280; function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis NA NA NA NA NA NA NA ENOG411DRW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os08g0109800 protein (Putative cytokinin-regulated kinase 1) Q6ZC64 Q6ZC64_ORYSJ Os08g0109800 Os08g0109800 OSNPB_080109800 P0007D08.20 ENOG411DRW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor GATA transcription factor 18 (OsGATA18) (Protein TIFY 1a) (OsTIFY1a) Q10F25 GAT18_ORYSJ GATA18 TIFY1A Os03g0684000 LOC_Os03g47970 OsJ_12136 OSJNBb0072E24.6 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. ENOG411DRW6 UGT80A2,SGT Q9M8Z7,A0A1I9LNA9 U80A2_ARATH,A0A1I9LNA9_ARATH Sterol 3-beta-glucosyltransferase UGT80A2 (EC 2.4.1.173) (UDP-glucose:sterol glucosyltransferase 80A2),UDP-Glycosyltransferase superfamily protein DISRUPTION PHENOTYPE: Reduced growth rates. {ECO:0000269|PubMed:19641030}. Small seeds-C. Somerville-2009 FUNCTION: Involved in the biosynthesis of sterol glucosides. Catalyzes the synthesis of steryl glycosides (SGs) and acyl steryl glycosides (ASGs) which are the most abundant sterol derivatives in higher plants. Can act on several sterols like sitosterol, campesterol and stigmasterol. Both UGT80A2 and UGT80B1 are required for the normal production of SGs and ASGs in seeds. {ECO:0000269|PubMed:19641030, ECO:0000269|PubMed:21830156}. ARA:AT3G07020-MONOMER;MetaCyc:AT3G07020-MONOMER; 2.4.1.173; 2.4.1.173 69277,61061 Sterol 3-beta-glucosyltransferase UGT80A2 (EC 2.4.1.173) (UDP-glucose:sterol glucosyltransferase 80A2),UDP-Glycosyltransferase superfamily protein intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; plasma membrane [GO:0005886]; beta-sitosterol UDP-glucosyltransferase activity [GO:0051507]; brassicasterol glucosyltransferase activity [GO:0102203]; cholesterol allpha-glucosyltransferase activity [GO:0102205]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; soladodine glucosyltransferase activity [GO:0102202]; sterol 3-beta-glucosyltransferase activity [GO:0016906]; carbohydrate metabolic process [GO:0005975]; lipid glycosylation [GO:0030259]; seed development [GO:0048316]; sterol biosynthetic process [GO:0016126]; sterol metabolic process [GO:0016125],transferase activity, transferring hexosyl groups [GO:0016758]; carbohydrate metabolic process [GO:0005975]; lipid glycosylation [GO:0030259] TISSUE SPECIFICITY: Expressed in roots, cauline leaf epidermal cells, stomata, stamen, pollen and around the base of siliques. {ECO:0000269|PubMed:12721858, ECO:0000269|PubMed:19641030}. locus:2077627; AT3G07020 sterol 3-beta-glucosyltransferase-like OSJNBb0080H08.21 protein (Os04g0131900 protein),Os04g0131850 protein Q7XRN9,A0A0P0W6E6 Q7XRN9_ORYSJ,A0A0P0W6E6_ORYSJ Os04g0131900 Os04g0131900 OSJNBb0080H08.21 OSNPB_040131900,Os04g0131850 OSNPB_040131850 ENOG411DRW5 ATJ1 Q38813,A0A1P8APZ8,F4HWI4 DNAJ1_ARATH,A0A1P8APZ8_ARATH,F4HWI4_ARATH Chaperone protein dnaJ 1, mitochondrial (AtDjB1) (AtJ1),DNAJ heat shock family protein FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 45678,44787,47841 Chaperone protein dnaJ 1, mitochondrial (AtDjB1) (AtJ1),DNAJ heat shock family protein mitochondrion [GO:0005739]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to heat [GO:0009408],ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to heat [GO:0009408] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:8790294}. locus:2032175; AT1G28210 chaperone protein DNAJ NA NA NA NA NA NA NA ENOG411DRW4 F4HS08 F4HS08_ARATH DNA ligase (DUF1666) 73590 DNA ligase (DUF1666) cytosolic large ribosomal subunit [GO:0022625]; integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412] locus:2027844; AT1G73850 Protein of unknown function (DUF1666) Os01g0129500 protein (cDNA clone:J033016J24, full insert sequence) Q9LG94 Q9LG94_ORYSJ Os01g0129500 Os01g0129500 OSNPB_010129500 P0408F06.22 ENOG411DRW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Potassium transporter 26 (OsHAK26) Q84YJ9 HAK26_ORYSJ HAK26 Os08g0510300 LOC_Os08g39950 OsJ_27891 OSJNBa0016N23.121 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DRW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os02g0608801 protein (Putative lipase),Os02g0604000 protein (Putative lipase),Os02g0603700 protein Q6K1X6,Q6K8J1,A0A0N7KFM6 Q6K1X6_ORYSJ,Q6K8J1_ORYSJ,A0A0N7KFM6_ORYSJ Os02g0608801 OSJNBa0030C08.38 OSNPB_020608801 P0496E03.11,Os02g0604000 Os02g0604000 OJ1669_F01.33 OSNPB_020604000,Os02g0603700 OSNPB_020603700 ENOG411DRWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain Os02g0125500 protein A0A0P0VE90 A0A0P0VE90_ORYSJ Os02g0125500 OSNPB_020125500 ENOG411DRWR MDA7.25 A0A1P8ARG2,Q0V7U5,Q94JT6,F4K6D8,Q94AB4,Q8RXP4,Q9C5N4,A0A1P8AU50,A0A1P8AU19,A0A1P8ARF8,A0A1P8BF16,F4I1K5 A0A1P8ARG2_ARATH,Q0V7U5_ARATH,Q94JT6_ARATH,F4K6D8_ARATH,Q94AB4_ARATH,Q8RXP4_ARATH,Q9C5N4_ARATH,A0A1P8AU50_ARATH,A0A1P8AU19_ARATH,A0A1P8ARF8_ARATH,A0A1P8BF16_ARATH,F4I1K5_ARATH Transducin/WD40 repeat-like superfamily protein,At1g36070 (Transducin/WD40 repeat-like superfamily protein),At1g78070/F28K19_28 (Transducin/WD40 repeat-like superfamily protein),At3g13340/MDC11_13 (Transducin/WD40 repeat-like superfamily protein),Putative WD-repeat protein (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At1g55680) Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. 33015,47246,50666,50361,50618,49685,50307,37628,37590,45100,52438,47118 Transducin/WD40 repeat-like superfamily protein,At1g36070 (Transducin/WD40 repeat-like superfamily protein),At1g78070/F28K19_28 (Transducin/WD40 repeat-like superfamily protein),At3g13340/MDC11_13 (Transducin/WD40 repeat-like superfamily protein),Putative WD-repeat protein (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At1g55680) Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2034285;,locus:2029486;,locus:2161810;,locus:2088150;,locus:2020512; AT1G36070,AT1G78070,AT5G56190,AT3G13340,AT1G55680 WD-40 repeat family protein Os02g0721600 protein (WD-40 repeat protein-like),Os08g0497600 protein (Putative GAMYB-binding protein) (cDNA clone:001-040-C09, full insert sequence),Os02g0721600 protein (Putative WD-40 repeat protein) (cDNA clone:J013001D05, full insert sequence) (cDNA clone:J013001H19, full insert sequence),Os02g0721600 protein (Fragment) Q6Z663,Q7F8T9,Q6Z664,A0A0P0VP67,A0A0P0VNU4 Q6Z663_ORYSJ,Q7F8T9_ORYSJ,Q6Z664_ORYSJ,A0A0P0VP67_ORYSJ,A0A0P0VNU4_ORYSJ P0654B04.16-2 OJ1008_D06.31-2 Os02g0721600 OSNPB_020721600,Os08g0497600 Os08g0497600 OsJ_27811 OSNPB_080497600 P0026F07.19,P0654B04.16-1 Os02g0721600 OSNPB_020721600,Os02g0721600 OSNPB_020721600 ENOG411DRWQ MQL5.28 Q84J77,Q8RXM5,F4JP53,F4JP54 Q84J77_ARATH,Q8RXM5_ARATH,F4JP53_ARATH,F4JP54_ARATH Tryptophan RNA-binding attenuator protein-like protein (Uncharacterized protein At4g17420),Tryptophan RNA-binding attenuator protein-like protein (Uncharacterized protein At5g47420),Tryptophan RNA-binding attenuator protein-like protein 30857,30572,29648,29004 Tryptophan RNA-binding attenuator protein-like protein (Uncharacterized protein At4g17420),Tryptophan RNA-binding attenuator protein-like protein (Uncharacterized protein At5g47420),Tryptophan RNA-binding attenuator protein-like protein integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2129016;,locus:2171559; AT4G17420,AT5G47420 Pfam:DUF124 HTH DNA-binding protein, putative, expressed (Os03g0747300 protein) Q94GQ4 Q94GQ4_ORYSJ OJ1124_H03.5 LOC_Os03g53600 Os03g0747300 OSNPB_030747300 ENOG411DRWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os09g0445700 protein A0A0N7KQW3 A0A0N7KQW3_ORYSJ Os09g0445700 OSNPB_090445700 ENOG411DRWW Q9LTD4 Q9LTD4_ARATH Plant/protein (DUF668) 60377 Plant/protein (DUF668) locus:2086218; AT3G23160 Protein of unknown function (DUF668) Os05g0406550 protein (Os05g0406600 protein) (Fragment),Os06g0212201 protein,Os04g0169500 protein C7J309,Q69TV7,A0A0P0W7B3 C7J309_ORYSJ,Q69TV7_ORYSJ,A0A0P0W7B3_ORYSJ Os05g0406550 Os05g0406600 OSNPB_050406550,Os06g0212201 OsJ_20569 OSNPB_060212201 P0021C04.36 P0701E03.13,Os04g0169500 OSNPB_040169500 ENOG411DRWU F4JML5 ECH2M_ARATH Probable enoyl-CoA hydratase 2, mitochondrial (EC 4.2.1.17) FUNCTION: Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate. {ECO:0000250|UniProtKB:P30084}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. {ECO:0000305}. R-ATH-70895; 4.2.1.17 32788 Probable enoyl-CoA hydratase 2, mitochondrial (EC 4.2.1.17) mitochondrion [GO:0005739]; enoyl-CoA hydratase activity [GO:0004300]; peptidase activity [GO:0008233]; fatty acid beta-oxidation [GO:0006635] locus:2129146; AT4G16800 hydratase Os02g0654100 protein (Putative enoyl-CoA hydratase) (cDNA clone:J033067A05, full insert sequence),Os02g0654000 protein (cDNA, clone: J090070E16, full insert sequence) Q6H7I3,B7F9R1 Q6H7I3_ORYSJ,B7F9R1_ORYSJ Os02g0654100 OJ1003_B06.2 OsJ_07771 OSNPB_020654100,Os02g0654000 OsJ_07770 OSNPB_020654000 ENOG411DRWT SCAB1 O48791 SCAB1_ARATH Stomatal closure-related actin-binding protein 1 DISRUPTION PHENOTYPE: Defect in stomatal movment and hypersensitivity to drought stress. {ECO:0000269|PubMed:21719691}. FUNCTION: Plant-specific actin binding protein that bundles and stabilizes microfilaments (MFs). Has no nucleation or capping activity. Regulates MF reorganization during stomatal closure. The binding to F-actin is insensitive to Ca(2+) and pH. Binds weakly to inositol phosphates (PubMed:22356912). {ECO:0000269|PubMed:21719691, ECO:0000269|PubMed:22356912}. 55418 Stomatal closure-related actin-binding protein 1 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin binding [GO:0003779]; actin filament organization [GO:0007015]; regulation of stomatal movement [GO:0010119] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and guard cells. {ECO:0000269|PubMed:21719691}. locus:2043828; AT2G26770 NA Os01g0805700 protein (cDNA clone:J023011I15, full insert sequence) (cDNA clone:J033074F22, full insert sequence) Q0JIF1 Q0JIF1_ORYSJ Os01g0805700 Os01g0805700 OSNPB_010805700 ENOG411DRWZ CAT8 Q9SHH0 CAAT8_ARATH Cationic amino acid transporter 8, vacuolar FUNCTION: Permease involved in the transport of the cationic neutral or acidic amino acids. {ECO:0000269|PubMed:15377779}. R-ATH-352230; 64862 Cationic amino acid transporter 8, vacuolar integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171] TISSUE SPECIFICITY: Expressed in roots, stems, flowers and leaves. Mostly present in young and rapidly dividing tissues such as the shoot and root apical meristem, and in young leaves and petioles during seedling development. {ECO:0000269|PubMed:15377779}. locus:2020387; AT1G17120 Cationic amino acid transporter Os06g0539400 protein (Putative cationic amino acid transporter),Os02g0195150 protein Q5Z6S8,Q6H7Q4 Q5Z6S8_ORYSJ,Q6H7Q4_ORYSJ Os06g0539400 Os06g0539400 B1018E06.14 OsJ_21598 OSNPB_060539400 P0551A03.56,OJ1225_F07.8 Os02g0195150 OSNPB_020195150 ENOG411DRWY CPP1 Q9FN50 CPP1_ARATH Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic (AtCPP1) (Protein CELL GROWTH DEFECT FACTOR 1) (AtCDF1) DISRUPTION PHENOTYPE: Reduced chloroplast biogenesis and chlorophyll synthesis associated with less POR protein accumulation. Photobleaching and growth inhibition of plants under light conditions. In dark-grown plants, reduced POR accumulation in etioplasts and impaired formation of prolamellar bodies, subsequently affecting chloroplast biogenesis upon illumination (PubMed:24151298). Embryo lethal with arrested embryogenesis at the globular stage (PubMed:24097264). {ECO:0000269|PubMed:24097264, ECO:0000269|PubMed:24151298}. FUNCTION: Essential protein required during embryogenesis (PubMed:24097264). Exhibits holdase chaperone activity involved in the stabilization of NADPH:protochlorophyllide oxidoreductase (POR) proteins against photooxidative stress during POR proteins import into chloroplasts. Required for chloroplast biogenesis and development (PubMed:24151298, PubMed:25901327). When expressed in yeast, triggers mitochondria-mediated cell death associated with the loss of mitochondrial membrane potential (PubMed:16192270). {ECO:0000269|PubMed:16192270, ECO:0000269|PubMed:24097264, ECO:0000269|PubMed:24151298, ECO:0000269|PubMed:25901327}. 28816 Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic (AtCPP1) (Protein CELL GROWTH DEFECT FACTOR 1) (AtCDF1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; plastid [GO:0009536]; plastid thylakoid membrane [GO:0055035]; protein binding involved in protein folding [GO:0044183]; cell death [GO:0008219]; chaperone-mediated protein folding [GO:0061077]; chloroplast organization [GO:0009658]; de-etiolation [GO:0009704]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of protein import into chloroplast stroma [GO:1904216] DEVELOPMENTAL STAGE: Low levels in the globular stage, but accumulates during early heart stage of embryogenesis and remains expressed during all later embryogenesis stages. {ECO:0000269|PubMed:24097264}. TISSUE SPECIFICITY: Expressed ubiquitously with higher levels in young leaves, flowers, and the root elongation zone. {ECO:0000269|PubMed:24097264}. locus:2178267; AT5G23040 Protein of unknown function (DUF3353) Os09g0380200 protein (Fragment),Os08g0416900 protein (Fragment),Os08g0416900 protein A0A0P0XLH4,A0A0P0XFP7,A0A0P0XFT1 A0A0P0XLH4_ORYSJ,A0A0P0XFP7_ORYSJ,A0A0P0XFT1_ORYSJ Os09g0380200 OSNPB_090380200,Os08g0416900 OSNPB_080416900 ENOG411DRWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase Os02g0114400 protein A0A0P0VDU4 A0A0P0VDU4_ORYSJ Os02g0114400 OSNPB_020114400 ENOG411DRWC CASP Q9LS42 CASP_ARATH Protein CASP FUNCTION: May be involved in intra-Golgi transport. {ECO:0000250}. 79684 Protein CASP endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of Golgi membrane [GO:0030173]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; Golgi vesicle transport [GO:0048193]; intra-Golgi vesicle-mediated transport [GO:0006891] locus:2095012; AT3G18480 CASP C terminal Os03g0710900 protein A0A0N7KHX3 A0A0N7KHX3_ORYSJ Os03g0710900 OSNPB_030710900 ENOG411DRWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inositol-3-phosphate synthase Inositol-3-phosphate synthase 1 (MIP synthase 1) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase) (IPS) (MI-1-P synthase) (OsINO1-1),Inositol-3-phosphate synthase 1 (MIP synthase 1) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase) (IPS) (MI-1-P synthase) (OsINO1-2) O64437,Q8S5N2 RINO1_ORYSJ,RINO2_ORYSJ RINO1 INO1 INO1-1 Os03g0192700 LOC_Os03g09250,RINO2 INO1-2 Os10g0369900 LOC_Os10g22450 OJ1003C07.7 OsJ_31267 FUNCTION: Involved in myo-inositol synthesis. Is a key enzyme in the phytic acid biosynthesis pathway in seeds. {ECO:0000269|PubMed:19021878}.,FUNCTION: Involved in myo-inositol synthesis. Is a key enzyme in the phytic acid biosynthesis pathway in seeds. {ECO:0000250|UniProtKB:O64437}. MISCELLANEOUS: Plants silencing RINO1 show a low phytic acid phenotype in seeds, and high accumulation of inorganic phosphate (Pi) in seeds. {ECO:0000269|PubMed:19021878}. ENOG411DRWG FQR1 Q9LSQ5,Q6NQE2,A0A1P8B767,A0A1P8B765,F4K0D0 FQR1_ARATH,FQRL1_ARATH,A0A1P8B767_ARATH,A0A1P8B765_ARATH,F4K0D0_ARATH NAD(P)H dehydrogenase (quinone) FQR1 (EC 1.6.5.2) (Flavodoxin-like quinone reductase 1),Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 (EC 1.6.5.2),Quinone reductase family protein,Flavodoxin-like quinone reductase 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased resistance to the necrotrophic fungus Botrytis cinerea. {ECO:0000269|PubMed:23464356}. FUNCTION: Catalyzes the transfer of electrons from NADH and NADPH to several quinones in vitro. May act as detoxification enzyme, and protect against auxin-induced oxidative stress. {ECO:0000269|PubMed:11842161}.,FUNCTION: Catalyzes the transfer of electrons from NADH and NADPH to reduce quinone to the hydroquinone state. {ECO:0000250|UniProtKB:Q9LSQ5}. ARA:AT5G54500-MONOMER;,ARA:AT4G27270-MONOMER; 1.6.5.2 21796,21792,20472,16051,26966 NAD(P)H dehydrogenase (quinone) FQR1 (EC 1.6.5.2) (Flavodoxin-like quinone reductase 1),Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 (EC 1.6.5.2),Quinone reductase family protein,Flavodoxin-like quinone reductase 1 plasma membrane [GO:0005886]; FMN binding [GO:0010181]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955]; cellular response to auxin stimulus [GO:0071365]; oxidation-reduction process [GO:0055114],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; FMN binding [GO:0010181]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955],FMN binding [GO:0010181]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; FMN binding [GO:0010181]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955]; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; oxidation-reduction process [GO:0055114]; response to auxin [GO:0009733] locus:2131749;,locus:2147304; AT5G54500,AT4G27270 flavoprotein 'putative 1,4-benzoquinone reductase (Os05g0501300 protein) (cDNA clone:006-208-C11, full insert sequence),Os01g0784800 protein (Putative quinone-oxidoreductase) (Putative quinone-oxidoreductase QR2) (cDNA clone:006-205-D02, full insert sequence) (cDNA clone:006-307-B10, full insert sequence) Q60EJ3,Q8LQN2 Q60EJ3_ORYSJ,Q8LQN2_ORYSJ Os05g0501300 Os05g0501300 OSJNBa0017K09.5 OSNPB_050501300,Os01g0784800 B1070A12.15 OsJ_03705 OSNPB_010784800 ENOG411DRWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyl-CpG binding domain Os04g0193200 protein,Os04g0273900 protein,Os04g0193900 protein A0A0P0W721,A0A0P0W8A4,A0A0P0W7F1 A0A0P0W721_ORYSJ,A0A0P0W8A4_ORYSJ,A0A0P0W7F1_ORYSJ Os04g0193200 OSNPB_040193200,Os04g0273900 OSNPB_040273900,Os04g0193900 OSNPB_040193900 ENOG411DRWE MCL19.12 F4KG14 F4KG14_ARATH Guanylate-binding family protein 122777 Guanylate-binding family protein chloroplast [GO:0009507]; nucleolus [GO:0005730]; GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2161358; AT5G46070 Guanylate-binding protein C-terminal domain Os02g0307000 protein (Putative guanylate binding protein),Os05g0563100 protein (Fragment) Q6K2Y3,A0A0P0WQZ8 Q6K2Y3_ORYSJ,A0A0P0WQZ8_ORYSJ Os02g0307000 Os02g0307000 OSNPB_020307000 P0543C11.35,Os05g0563100 OSNPB_050563100 ENOG411DRWD MED13,GCT F4I096,A0A1P8AV32 MED13_ARATH,A0A1P8AV32_ARATH Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2),RNA polymerase II transcription mediator DISRUPTION PHENOTYPE: Abnormal embryo and cotyledon development, and embryo lethality in most cases. When viable, plants are small with greatly delayed flowering time and sterile flowers. {ECO:0000269|PubMed:20023166, ECO:0000269|PubMed:21257604, ECO:0000269|PubMed:22247249}. Uncoupling of growth and pattern formation in early embryogenesis. Patterning is delayed by several days after which radial patterning beings in a remarkably normal manner. Embryo defective; Cotyledon; Abnormal cell specification; Reduced fertility-S. Poethig-2010 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Acts closely together with MAB12. Involved in the regulation of embryo patterning and cotyledon organogenesis. May act through transient repression of specific genes such as the ones responsive to auxin. {ECO:0000269|PubMed:20023166, ECO:0000269|PubMed:21257604, ECO:0000269|PubMed:22247249}.,FUNCTION: Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364134}. 208462,206731 Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2),RNA polymerase II transcription mediator integral component of membrane [GO:0016021]; nucleus [GO:0005634]; sugar transmembrane transporter activity [GO:0051119]; carbohydrate transport [GO:0008643]; multicellular organism development [GO:0007275]; regulation of development, heterochronic [GO:0040034]; regulation of growth [GO:0040008]; regulation of radial pattern formation [GO:0090213]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104] DEVELOPMENTAL STAGE: Expressed in both the apical and basal cell at the one-cell embryo stage and in all cells of the embryo and suspensor through the globular stage. Decreases in the periphery of the hypocotyl and on the abaxial side of cotyledons from the heart stage to the torpedo stage, and by the bent cotyledon stage, restricted to the vascular tissue and the shoot and root apical meristems. {ECO:0000269|PubMed:20023166}. TISSUE SPECIFICITY: Ubiquitous. Highest expression in the shoot apex. {ECO:0000269|PubMed:20023166}. locus:1005716738; AT1G55325 Inherit from KOG: synthetase Mediator of RNA polymerase II transcription subunit 13 (Fragment) A0A0P0WN18 A0A0P0WN18_ORYSJ Os05g0447500 OSNPB_050447500 FUNCTION: Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364134}. ENOG411DRWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Potassium transporter 6 (OsHAK6) Q5JMH0 HAK6_ORYSJ HAK6 Os01g0932500 LOC_Os01g70660 P0423A12.11 P0506E04.32 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DRWJ CMS1 Q9SIR0,Q0KKQ1,A0A1P8B0P7,A0A1P8B0P6 Q9SIR0_ARATH,Q0KKQ1_ARATH,A0A1P8B0P7_ARATH,A0A1P8B0P6_ARATH TRAF-like family protein (Uncharacterized protein At2g25330),CGS1 mRNA stability 1 (TRAF-like family protein),TRAF-like family protein 78069,187676,187807,160349 TRAF-like family protein (Uncharacterized protein At2g25330),CGS1 mRNA stability 1 (TRAF-like family protein),TRAF-like family protein locus:2059536;,locus:2059551; AT2G25330,AT2G25320 MATH domain Os02g0613400 protein (Fragment) A0A0P0VLW3 A0A0P0VLW3_ORYSJ Os02g0613400 OSNPB_020613400 ENOG411DRWI RH36 Q9SA27 RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 (EC 3.6.4.13) Female gametophyte defective; Rare embryo defective (inferred)-W. Yang-2010 R-ATH-6791226; 3.6.4.13 54835 DEAD-box ATP-dependent RNA helicase 36 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; nucleic acid binding [GO:0003676]; embryo sac development [GO:0009553]; megagametogenesis [GO:0009561]; post-embryonic development [GO:0009791]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364] locus:2032910; AT1G16280 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 36 (EC 3.6.4.13),Os07g0633500 protein Q8L4E9,A0A0P0X959 RH36_ORYSJ,A0A0P0X959_ORYSJ Os07g0633500 LOC_Os07g43980 OsJ_25257 P0455H11.103 P0519E12.133,Os07g0633500 OSNPB_070633500 ENOG411DRWH PLT5 Q8VZ80 PLT5_ARATH Polyol transporter 5 (Protein POLYOL TRANSPORTER 5) (AtPLT5) (Sugar-proton symporter PLT5) FUNCTION: Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. {ECO:0000269|PubMed:15525644, ECO:0000269|PubMed:15598803}. 58103 Polyol transporter 5 (Protein POLYOL TRANSPORTER 5) (AtPLT5) (Sugar-proton symporter PLT5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; D-ribose transmembrane transporter activity [GO:0015591]; D-xylose transmembrane transporter activity [GO:0015148]; galactose transmembrane transporter activity [GO:0005354]; glucose transmembrane transporter activity [GO:0005355]; glycerol transmembrane transporter activity [GO:0015168]; mannitol transmembrane transporter activity [GO:0015575]; monosaccharide transmembrane transporter activity [GO:0015145]; myo-inositol transmembrane transporter activity [GO:0005365]; sorbitol transmembrane transporter activity [GO:0015576]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; lateral root formation [GO:0010311] TISSUE SPECIFICITY: Highly expressed in roots. Expressed in vascular tissue of leaves, sepals and siliques. {ECO:0000269|PubMed:15525644, ECO:0000269|PubMed:15598803}. locus:2094034; AT3G18830 Transporter Os07g0582400 protein (Putative sorbitol transporter) Q6ZFM7 Q6ZFM7_ORYSJ Os07g0582400 OJ1301_C12.23 OsJ_24893 OSNPB_070582400 ENOG411DRWN HCF107 Q8RWG2,A0A1I9LTR5,F4J3Z3,A0A1I9LTR4 CF107_ARATH,A0A1I9LTR5_ARATH,F4J3Z3_ARATH,A0A1I9LTR4_ARATH Protein high chlorophyll fluorescent 107,High chlorophyll fluorescent 107 DISRUPTION PHENOTYPE: In hcf107-2, reduced accumulation of 5'-end-processed psbH transcript, as well as psbB translation, resulting in disruption of photosystem II (PSII) and seedling lethal plants. Specific loss of processed RNAs with a 5' end 44nt upstream of the psbH start codon in the psbB-psbT-psbH-petB-petD gene cluster. {ECO:0000269|PubMed:11549768, ECO:0000269|PubMed:15918885, ECO:0000269|PubMed:22451905}. FUNCTION: Involved, directly or indirectly, in the processing of chloroplast encoded mRNAs. Exhibits sequence-specific RNA binding and RNA remodeling activities, probably leading to the activation of translation of the target gene cluster psbB-psbT-psbH-petB-petD (PubMed:22451905). Blocks 5'-3' and 3'-5' exoribonucleases (e.g. polynucleotide phosphorylase (PNPase), RNase R) in vitro (PubMed:22451905). Necessary for intercistronic RNA processing of the psbH 5' untranslated region or the stabilization of 5' processed psbH RNAs. Also required for the synthesis of psbB (PubMed:11549768, PubMed:15918885, PubMed:22451905). {ECO:0000269|PubMed:11549768, ECO:0000269|PubMed:15918885, ECO:0000269|PubMed:22451905}. 73471,51179,69828,49166 Protein high chlorophyll fluorescent 107,High chlorophyll fluorescent 107 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; vacuolar membrane [GO:0005774]; protein self-association [GO:0043621]; single-stranded RNA binding [GO:0003727]; mRNA processing [GO:0006397]; negative regulation of exoribonuclease activity [GO:1901918]; plastid organization [GO:0009657]; regulation of translation [GO:0006417]; response to red light [GO:0010114]; RNA processing [GO:0006396],RNA processing [GO:0006396] locus:2086132; AT3G17040 psbB mRNA maturation factor Mbb1 Os03g0308800 protein (TPR Domain containing protein, expressed),Os03g0308800 protein (Fragment) Q10MH3,Q10MH4,A0A0P0VXD9 Q10MH3_ORYSJ,Q10MH4_ORYSJ,A0A0P0VXD9_ORYSJ Os03g0308800 LOC_Os03g19560 OSNPB_030308800,LOC_Os03g19560 Os03g0308800 OsJ_10578 OSNPB_030308800,Os03g0308800 OSNPB_030308800 ENOG411DRWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced in root cultures protein 12-like Cytochrome b561 and DOMON domain-containing protein A0A0N7KR22 A0A0N7KR22_ORYSJ Os09g0500900 OSNPB_090500900 ENOG411DRP7 NEK1,NEK4 Q9SLI2,Q8RXT4,A0A1P8AST4,A0A1I9LPR2 NEK1_ARATH,NEK4_ARATH,A0A1P8AST4_ARATH,A0A1I9LPR2_ARATH Serine/threonine-protein kinase Nek1 (EC 2.7.11.1) (NimA-related protein kinase 1) (AtNek1),Serine/threonine-protein kinase Nek4 (EC 2.7.11.1) (NimA-related protein kinase 4) (AtNek4),NIMA-related serine/threonine kinase 1,NIMA-related kinase 4 FUNCTION: May be involved in plant development processes. 2.7.11.1 68836,62898,49059,68949 Serine/threonine-protein kinase Nek1 (EC 2.7.11.1) (NimA-related protein kinase 1) (AtNek1),Serine/threonine-protein kinase Nek4 (EC 2.7.11.1) (NimA-related protein kinase 4) (AtNek4),NIMA-related serine/threonine kinase 1,NIMA-related kinase 4 ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2020148;,locus:2077274; AT1G54510,AT3G63280 serine threonine-protein kinase Serine/threonine-protein kinase Nek1 (EC 2.7.11.1) (NimA-related protein kinase 1) (OsNek1),Serine/threonine-protein kinase Nek2 (EC 2.7.11.1) (NimA-related protein kinase 2) (OsNek2),Os03g0636800 protein,Os12g0604700 protein (Fragment) Q10GB1,Q2QMH1,A0A0P0W0G3,A0A0P0YCW2 NEK1_ORYSJ,NEK2_ORYSJ,A0A0P0W0G3_ORYSJ,A0A0P0YCW2_ORYSJ NEK1 Os03g0636800 LOC_Os03g43590 OsJ_11838 OSJNBa0066H15.19,NEK2 Os12g0604700 LOC_Os12g41180 OsJ_035350,Os03g0636800 OSNPB_030636800,Os12g0604700 OSNPB_120604700 FUNCTION: May be involved in plant development processes. {ECO:0000305|PubMed:17886359}. ENOG411E7HB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7HC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7HP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0674400 protein A0A0P0V6G5 A0A0P0V6G5_ORYSJ Os01g0674400 OSNPB_010674400 ENOG411E7HQ INH3 Q8S8F7 Q8S8F7_ARATH At2g31305 (Expressed protein) (Inhibitor-3) Embryo defective; Globular-K. Shimazaki-2009 FUNCTION: Inhibitor of protein-phosphatase 1 (PP1). Binds to and inhibits PP1 activity. Required for early embryogenesis progression. {ECO:0000269|PubMed:19329567}. 12104 At2g31305 (Expressed protein) (Inhibitor-3) nucleus [GO:0005634]; protein phosphatase type 1 complex [GO:0000164]; protein phosphatase 1 binding [GO:0008157]; protein serine/threonine phosphatase inhibitor activity [GO:0004865]; embryo development ending in seed dormancy [GO:0009793]; negative regulation of phosphoprotein phosphatase activity [GO:0032515] locus:505006282; AT2G31305 Protein phosphatase inhibitor Os05g0270400 protein (cDNA clone:J023092L21, full insert sequence),Os04g0295000 protein (cDNA clone:001-103-A01, full insert sequence) Q5W6B4,Q0JEC6 Q5W6B4_ORYSJ,Q0JEC6_ORYSJ Os05g0270400 Os05g0270400 OJ1653_D06.2 OsJ_17854 OSJNBa0037H03.17 OSNPB_050270400,Os04g0295000 Os04g0295000 OSNPB_040295000 ENOG411E7HR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0364400 protein,Os06g0486075 protein Q69NK2,A0A0P0WWY3 Q69NK2_ORYSJ,A0A0P0WWY3_ORYSJ Os09g0364400 OJ1001_G09.26 OSNPB_090364400 P0441A12.5,Os06g0486075 OSNPB_060486075 ENOG411E7HS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411E7HW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0219300 protein (cDNA clone:J033023K13, full insert sequence) Q0JPJ5 Q0JPJ5_ORYSJ Os01g0219300 Os01g0219300 OSNPB_010219300 ENOG411E7HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of NA NA NA NA NA NA NA ENOG411E7H0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0118700 protein,Os02g0118500 protein Q6ZH43,A0A0P0VE26 Q6ZH43_ORYSJ,A0A0P0VE26_ORYSJ Os02g0118700 OJ1217_F02.10 OsJ_05138 OSNPB_020118700,Os02g0118500 OSNPB_020118500 ENOG411E7H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os07g0686600 protein (cDNA clone:002-144-B10, full insert sequence) Q8LIG8 Q8LIG8_ORYSJ OJ1200_C08.117 OJ1150_E04.113 Os07g0686600 OSNPB_070686600 ENOG411E7H2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411E7H3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: CLAVATA3 ESR (CLE)-related protein NA NA NA NA NA NA NA ENOG411E7H4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein H4 (DUF2046) NA NA NA NA NA NA NA ENOG411E7H6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411E7H7 F4JKD1 F4JKD1_ARATH Uncharacterized protein 17168 Uncharacterized protein locus:2120608; AT4G21970 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E0Q9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development pest resistance and senescence or responses to wounding (By similarity) Lipoxygenase (EC 1.13.11.-),Lipoxygenase (EC 1.13.11.-) (Fragment) Q0IS17,Q0DJB6,A0A0P0WKN7 Q0IS17_ORYSJ,Q0DJB6_ORYSJ,A0A0P0WKN7_ORYSJ Os11g0575600 LOC_Os11g36719 Os11g0575600 OSNPB_110575600,Os05g0304600 Os05g0304600 OSNPB_050304600,Os05g0304600 OSNPB_050304600 FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. {ECO:0000256|RuleBase:RU003975}. ENOG411E2W0 MLP3.21 A0A1I9LS01,Q93VV3,A0A1I9LS02,A0A1I9LS00,A0A1I9LS06 A0A1I9LS01_ARATH,Q93VV3_ARATH,A0A1I9LS02_ARATH,A0A1I9LS00_ARATH,A0A1I9LS06_ARATH Sterile alpha motif (SAM) domain-containing protein,At3g07760/F17A17.10 (Sterile alpha motif (SAM) domain-containing protein) 13223,14819,16699,12724,16648 Sterile alpha motif (SAM) domain-containing protein,At3g07760/F17A17.10 (Sterile alpha motif (SAM) domain-containing protein) locus:2077347; AT3G07760 SAM domain (Sterile alpha motif) Expressed protein (Os12g0514600 protein) (cDNA clone:J033060I15, full insert sequence) Q0IN13 Q0IN13_ORYSJ Os12g0514600 LOC_Os12g32992 Os12g0514600 OSNPB_120514600 ENOG411E0GZ Q8VZN9 P2C11_ARATH Probable protein phosphatase 2C 11 (AtPP2C11) (EC 3.1.3.16) 3.1.3.16 40583 Probable protein phosphatase 2C 11 (AtPP2C11) (EC 3.1.3.16) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2029172; AT1G43900 phosphatase 2C NA NA NA NA NA NA NA ENOG411EEIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEIP B3H641 B3H641_ARATH DNA binding protein 26100 DNA binding protein locus:4515103432; AT4G21895 dna binding NA NA NA NA NA NA NA ENOG411EEIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os09g0323200 protein,F-box domain containing protein (Os03g0385600 protein),Os09g0323400 protein Q6K2D8,Q6ASY4,A0A0P0XLK6 Q6K2D8_ORYSJ,Q6ASY4_ORYSJ,A0A0P0XLK6_ORYSJ OSJNBb0024J13.16 Os09g0323200 OSNPB_090323200,B1246D11.5 Os03g0385600 LOC_Os03g26840 OsJ_11085 OSNPB_030385600,Os09g0323400 OSNPB_090323400 ENOG411EEIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EEIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CsAtPR5, putative, expressed (Os10g0487500 protein) (cDNA clone:002-154-C11, full insert sequence) Q109I3 Q109I3_ORYSJ Os10g0487500 LOC_Os10g34602 Os10g0487500 OSNPB_100487500 ENOG411EEIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EEIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEIV AGL46 F4IIT6 F4IIT6_ARATH AGAMOUS-like 46 38020 AGAMOUS-like 46 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2054543; AT2G28700 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EEIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc knuckle family protein NA NA NA NA NA NA NA ENOG411EEIZ ISU3 O81433 ISU3_ARATH Iron-sulfur cluster assembly protein 3 (AtISU3) (Protein ISCU-LIKE 3) (NifU-like N-terminal domain-containing protein ISU3) (NifU-like protein ISU3) FUNCTION: Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (PubMed:17417719). First, a [2Fe-2S] cluster is transiently assembled on the scaffold protein ISCU (ISU1, ISU2 or ISU3). In a second step, the cluster is released from ISCU, transferred to a glutaredoxin, followed by the formation of mitochondrial [2Fe-2S] proteins, the synthesis of [4Fe-4S] clusters and their target-specific insertion into the recipient apoproteins. Cluster assembly on ISCU depends on the function of the cysteine desulfurase complex NFS1-ISD11, which serves as the sulfur donor for cluster synthesis, the iron-binding protein frataxin as the putative iron donor, and the electron transfer chain comprised of ferredoxin reductase and ferredoxin, which receive their electrons from NADH (By similarity). {ECO:0000250|UniProtKB:Q03020, ECO:0000269|PubMed:17417719}. PATHWAY: Cofactor biosynthesis; iron-sulfur cluster biosynthesis. {ECO:0000250|UniProtKB:Q03020}. R-ATH-1362409; 18471 Iron-sulfur cluster assembly protein 3 (AtISU3) (Protein ISCU-LIKE 3) (NifU-like N-terminal domain-containing protein ISU3) (NifU-like protein ISU3) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ferrous iron binding [GO:0008198]; iron-sulfur transferase activity [GO:0036455]; structural molecule activity [GO:0005198]; cellular iron ion homeostasis [GO:0006879]; iron-sulfur cluster assembly [GO:0016226]; protein maturation by iron-sulfur cluster transfer [GO:0097428] TISSUE SPECIFICITY: Mostly expressed in flowers and pollen, and, to a lower extent, in leaves and roots. {ECO:0000269|PubMed:15792798, ECO:0000269|PubMed:17417719}. locus:2136612; AT4G04080 NifU-like N terminal domain Os01g0662600 protein (cDNA clone:J013066C15, full insert sequence),Iron-sulfur cluster assembly protein B7EPE4,Q6AUN9,Q8LR34 B7EPE4_ORYSJ,Q6AUN9_ORYSJ,Q8LR34_ORYSJ Os01g0662600 OSNPB_010662600,Os05g0568100 OJ1781_H11.19 OsJ_19585 OSJNBa0040E06.1 OSNPB_050568100,Os01g0662600 OSNPB_010662600 P0671D01.28 FUNCTION: Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins. {ECO:0000256|RuleBase:RU362089}. ENOG411EEIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Metallopeptidase M20 family NA NA NA NA NA NA NA ENOG411EEIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-terminal domain of 1-Cys peroxiredoxin NA NA NA NA NA NA NA ENOG411EEIB TIK Q0WSX8,Q6NPD9,Q9FKE3,A0A1P8B9S7,F4JU09 TIK_ARATH,Q6NPD9_ARATH,Q9FKE3_ARATH,A0A1P8B9S7_ARATH,F4JU09_ARATH TIR domain-containing protein (AtTIK) (TIR-KASH protein),At5g44900 (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein (TIR-NBS-LRR class) family (Similarity to disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family,Toll-Interleukin-Resistance (TIR) domain family protein DISRUPTION PHENOTYPE: Shorter roots. {ECO:0000269|PubMed:25217773}. FUNCTION: Could play a role in nuclear morphology, specifically nuclear size. {ECO:0000269|PubMed:25217773}. 29699,29305,62304,58580,31390 TIR domain-containing protein (AtTIK) (TIR-KASH protein),At5g44900 (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein (TIR-NBS-LRR class) family (Similarity to disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family,Toll-Interleukin-Resistance (TIR) domain family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; protein self-association [GO:0043621]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; signal transduction [GO:0007165],signal transduction [GO:0007165] locus:2155382;,locus:2155362;,locus:2153373;,locus:2119762; AT5G44920,AT5G44900,AT5G45220,AT4G19920 TIR NA NA NA NA NA NA NA ENOG411EEIE ATG8B Q9XEB5 ATG8B_ARATH Autophagy-related protein 8b (Autophagy-related ubiquitin-like modifier ATG8b) (AtAPG8b) (Protein autophagy 8b) FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. 13880 Autophagy-related protein 8b (Autophagy-related ubiquitin-like modifier ATG8b) (AtAPG8b) (Protein autophagy 8b) autophagosome membrane [GO:0000421]; cytoplasmic vesicle [GO:0031410]; microtubule [GO:0005874]; autophagy [GO:0006914]; cellular response to nitrogen starvation [GO:0006995]; protein transport [GO:0015031] TISSUE SPECIFICITY: Contitutively expressed. {ECO:0000269|PubMed:15494556}. locus:2125791; AT4G04620 Pfam:MAP1_LC3 NA NA NA NA NA NA NA ENOG411EEID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EEIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA plant-specific domain TIGR01568 family protein Os11g0156401 protein (cDNA, clone: J100063F10, full insert sequence) B7FAC7 B7FAC7_ORYSJ Os11g0156401 Os11g0156401 OSNPB_110156401 ENOG411EEIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411EEIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EEIK GEBP,GPL1,MBK23.5 Q9ASZ1,Q8VYD2,Q9FFS7 STKLO_ARATH,STKLH_ARATH,Q9FFS7_ARATH GLABROUS1 enhancer-binding protein (Probable transcription factor At4g00270) (Protein GeBP) (Storekeeper-like protein At4g00270),GLABROUS1 enhancer-binding protein-like 1 (Protein GPL1) (Storekeeper-like protein At2g25650),Transmembrane protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:12535344}. FUNCTION: DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.,FUNCTION: Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. 34058,43350,16718 GLABROUS1 enhancer-binding protein (Probable transcription factor At4g00270) (Protein GeBP) (Storekeeper-like protein At4g00270),GLABROUS1 enhancer-binding protein-like 1 (Protein GPL1) (Storekeeper-like protein At2g25650),Transmembrane protein nucleolus [GO:0005730]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia (PubMed:12535344, PubMed:18162594). Not detected in emerging or mature leaves (PubMed:12535344). Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots (PubMed:18162594). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:18162594}.,TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots. {ECO:0000269|PubMed:18162594}. locus:2126031;,locus:2050322;,locus:2160467; AT4G00270,AT2G25650,AT5G41530 DNA-binding storekeeper protein-related NA NA NA NA NA NA NA ENOG411EEIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Squamosa promoter-binding-like protein NA NA NA NA NA NA NA ENOG411EEIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os01g0834300 protein A0A0P0VA29 A0A0P0VA29_ORYSJ Os01g0834300 OSNPB_010834300 ENOG411EEI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EEI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pinin/SDK/memA/ protein conserved region NA NA NA NA NA NA NA ENOG411EEI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide methionine sulfoxide reductase NA NA NA NA NA NA NA ENOG411EEI4 Q9LNT3 Q9LNT3_ARATH T20H2.15 protein (Uncharacterized protein At1g20070) (Uncharacterized protein At1g20070/T20H2_14) 20984 T20H2.15 protein (Uncharacterized protein At1g20070) (Uncharacterized protein At1g20070/T20H2_14) locus:2198596; AT1G20070 NA NA NA NA NA NA NA NA ENOG411EEI7 PRA1G1 Q9ZWD1 PR1G1_ARATH PRA1 family protein G1 (AtPRA1.G1) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 20782 PRA1 family protein G1 (AtPRA1.G1) endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in roots and lateral roots. {ECO:0000269|PubMed:18583532}. locus:2020532; AT1G55640 prenylated rab acceptor NA NA NA NA NA NA NA ENOG411EEI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_A20 Zinc finger A20 and AN1 domain-containing stress-associated protein 10 (OsSAP10) Q69LE0 SAP10_ORYSJ SAP10 Os07g0169500 LOC_Os07g07400 OSJNBa0050F10.17 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411EEI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand NA NA NA NA NA NA NA ENOG411DXY2 F3C22_160 Q9LXI9,Q9SJM8 Q9LXI9_ARATH,Q9SJM8_ARATH Protein YIPF 27638,27094 Protein YIPF integral component of membrane [GO:0016021] locus:2083273;,locus:2049450; AT3G52760,AT2G36300 Yip1 domain Protein YIPF,Protein YIPF (Fragment) Q10MY7,A0A0P0VWB1 Q10MY7_ORYSJ,A0A0P0VWB1_ORYSJ Os03g0289200 LOC_Os03g17990 Os03g0289200 OsJ_10439 OSNPB_030289200,Os03g0289200 OSNPB_030289200 ENOG411EH3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EH36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0147400 protein (cDNA clone:J023039G07, full insert sequence) Q5VP40 Q5VP40_ORYSJ Os06g0147400 Os06g0147400 OsJ_06346 OSNPB_060147400 P0036F10.33 ENOG411EH37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: chromosome 11 open reading frame 65 NA NA NA NA NA NA NA ENOG411E2P4 WRKY43 Q8GY11 WRK43_ARATH Probable WRKY transcription factor 43 (WRKY DNA-binding protein 43) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 12952 Probable WRKY transcription factor 43 (WRKY DNA-binding protein 43) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2062949; AT2G46130 WRKY transcription factor Os01g0734000 protein (Putative WRKY DNA binding protein) (WRKY transcription factor 23) (WRKY23) (WRKY4) (cDNA clone:002-152-G06, full insert sequence) Q942D2 Q942D2_ORYSJ WRKY23 Os01g0734000 B1060H01.11 OsJ_03362 OSJNBb0036G09.22 OSNPB_010734000 ENOG411EHAX Q5BPY8 Q5BPY8_ARATH LOW protein: protein BOBBER-like protein 15322 LOW protein: protein BOBBER-like protein locus:2013733; AT1G29540 NA NA NA NA NA NA NA NA ENOG411EHAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HRDC domain NA NA NA NA NA NA NA ENOG411EHAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2PS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance response protein Dirigent protein Q53NP7,Q53NP8 Q53NP7_ORYSJ,Q53NP8_ORYSJ LOC_Os11g07680 Os11g0179000 OsJ_33173 OSNPB_110179000,LOC_Os11g07670 Os11g0178800 OSNPB_110178800 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E2PR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance response protein 206-like NA NA NA NA NA NA NA ENOG411EHAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZCW O82762 O82762_ARATH F17H15.1/F17H15.1 (KH domain-containing protein) (Uncharacterized protein At2g25970) R-ATH-450604; 64607 F17H15.1/F17H15.1 (KH domain-containing protein) (Uncharacterized protein At2g25970) cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2043530; AT2G25970 KH domain High molecular weight glutenin subunit x-like protein (Os02g0224300 protein),Os02g0224300 protein (Fragment) Q6Z8B6,A0A0P0VGL4 Q6Z8B6_ORYSJ,A0A0P0VGL4_ORYSJ Os02g0224300 Os02g0224300 OSNPB_020224300 P0470A03.19,Os02g0224300 OSNPB_020224300 ENOG411DZCU Q9LR91 Q9LR91_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (At1g24040) (T23E23.19) (Uncharacterized protein At1g24040) (Uncharacterized protein At1g24040/T23E23_24) 36019 Acyl-CoA N-acyltransferases (NAT) superfamily protein (At1g24040) (T23E23.19) (Uncharacterized protein At1g24040) (Uncharacterized protein At1g24040/T23E23_24) cytosolic ribosome [GO:0022626]; NatA complex [GO:0031415]; peptide-glutamate-N-acetyltransferase activity [GO:1990190]; peptide-serine-N-acetyltransferase activity [GO:1990189]; internal protein amino acid acetylation [GO:0006475]; N-terminal peptidyl-glutamic acid acetylation [GO:0018002]; N-terminal peptidyl-serine acetylation [GO:0017198] locus:2199937; AT1G24040 Acetyltransferase (GNAT) family OSJNBb0048E02.11 protein (Os04g0465500 protein) (cDNA clone:001-204-G06, full insert sequence) Q7XUY6 Q7XUY6_ORYSJ Os04g0465500 Os04g0465500 OsJ_15101 OSJNBb0048E02.11 OSNPB_040465500 ENOG411DZCS Q9SA86,F4HV09 BBE9_ARATH,BBE14_ARATH Berberine bridge enzyme-like 9 (AtBBE-like 9) (EC 1.1.1.-),Berberine bridge enzyme-like 14 (AtBBE-like 14) (EC 1.1.1.-) ARA:AT1G30710-MONOMER;,ARA:AT1G34575-MONOMER; 1.1.1.- 59330,59054 Berberine bridge enzyme-like 9 (AtBBE-like 9) (EC 1.1.1.-),Berberine bridge enzyme-like 14 (AtBBE-like 14) (EC 1.1.1.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] TISSUE SPECIFICITY: Accumulates in cell walls of etiolated hypocotyls. {ECO:0000269|PubMed:18796151}. locus:2204614;,locus:505006170; AT1G30710,AT1G34575 domain-containing protein NA NA NA NA NA NA NA ENOG411DZCN Q9ZUK9 Q9ZUK9_ARATH At2g15020 (Uncharacterized protein At2g15020) 59411 At2g15020 (Uncharacterized protein At2g15020) locus:2055807; AT2G15020 NA Expressed protein (Os03g0375200 protein) Q7Y168 Q7Y168_ORYSJ Os03g0375200 LOC_Os03g25850 OSJNBa0090L05.5 OSNPB_030375200 ENOG411DZCK EXPA12 Q9LDJ3,A0A1I9LSN2 EXP12_ARATH,A0A1I9LSN2_ARATH Expansin-A12 (AtEXPA12) (Alpha-expansin-12) (At-EXP12) (AtEx12) (Ath-ExpAlpha-1.24) (Expansin-S2),Expansin 12 FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 27617,31337 Expansin-A12 (AtEXPA12) (Alpha-expansin-12) (At-EXP12) (AtEx12) (Ath-ExpAlpha-1.24) (Expansin-S2),Expansin 12 cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] locus:2090161; AT3G15370 Pollen allergen NA NA NA NA NA NA NA ENOG411DZCI NUCL2,NUC-L2 Q1PEP5,A0A1I9LLX7,A0A1I9LLX8 NUCL2_ARATH,A0A1I9LLX7_ARATH,A0A1I9LLX8_ARATH Nucleolin 2 (Protein NUCLEOLIN LIKE 2) (AtNUC-L2) (Protein PARALLEL LIKE 1) (AtPARLL1),Nucleolin like 2 FUNCTION: Involved in pre-rRNA processing and ribosome assembly. {ECO:0000250}. MISCELLANEOUS: Disruption of NUCL1 induces NUCL2 expression. {ECO:0000305|PubMed:17108323}. R-ATH-6791226; 68987,65798,62652 Nucleolin 2 (Protein NUCLEOLIN LIKE 2) (AtNUC-L2) (Protein PARALLEL LIKE 1) (AtPARLL1),Nucleolin like 2 nucleolus [GO:0005730]; nucleosome binding [GO:0031491]; RNA binding [GO:0003723]; rRNA processing [GO:0006364],RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed at low levels in flower buds. {ECO:0000269|PubMed:17286797}. locus:2086884; AT3G18610 rRNA processing Nucleolin 2 (Protein NUCLEOLIN LIKE 2),Os04g0620700 protein (Fragment) Q7XTT4,A0A0P0WF51 NUCL2_ORYSJ,A0A0P0WF51_ORYSJ Os04g0620700 LOC_Os04g52960 OSJNBa0058K23.21,Os04g0620700 OSNPB_040620700 FUNCTION: Involved in pre-rRNA processing and ribosome assembly. {ECO:0000250}. ENOG411DZCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1084) Os02g0683900 protein (Tobamovirus multiplication protein 3-like),Os02g0683900 protein Q6EU03,A0A0P0VNF8 Q6EU03_ORYSJ,A0A0P0VNF8_ORYSJ OJ1123_G04.30-1 Os02g0683900 OJ1212_A08.7-1 OSNPB_020683900,Os02g0683900 OSNPB_020683900 ENOG411DZCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411DZCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os06g0569300 protein,Glycosyltransferase (EC 2.4.1.-),Os12g0630950 protein,Os02g0242900 protein (Fragment) Q5Z5S2,Q6ESV8,A0A0P0VGY5,A0A0P0YD75,A0A0P0VH00 Q5Z5S2_ORYSJ,Q6ESV8_ORYSJ,A0A0P0VGY5_ORYSJ,A0A0P0YD75_ORYSJ,A0A0P0VH00_ORYSJ Os06g0569300 Os06g0569300 OsJ_21745 OSJNBa0062E01.23 OSNPB_060569300,Os02g0243300 OSNPB_020243300 P0503B05.26,Os02g0242550 OSNPB_020242550,Os12g0630950 OSNPB_120630950,Os02g0242900 OSNPB_020242900 ENOG411DZCE O65457,O65388,Q9C8G4,O65456 PLY17_ARATH,PLY2_ARATH,PLY4_ARATH,PLY16_ARATH Putative pectate lyase 17 (EC 4.2.2.2),Putative pectate lyase 2 (EC 4.2.2.2),Probable pectate lyase 4 (EC 4.2.2.2),Probable pectate lyase 16 (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. ARA:AT4G22090-MONOMER;,ARA:AT1G11920-MONOMER;,ARA:AT1G30350-MONOMER;,ARA:AT4G22080-MONOMER; 4.2.2.2 43299,42693,40576,43476 Putative pectate lyase 17 (EC 4.2.2.2),Putative pectate lyase 2 (EC 4.2.2.2),Probable pectate lyase 4 (EC 4.2.2.2),Probable pectate lyase 16 (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2120643;,locus:2008925;,locus:2204232;,locus:2120633; AT4G22090,AT1G11920,AT1G30350,AT4G22080 Pectate lyase NA NA NA NA NA NA NA ENOG411DZCD Q0WM46,Q9FH24 Q0WM46_ARATH,Q9FH24_ARATH Vitellogenin-like protein,Uncharacterized protein At5g49100 (Vitellogenin-like protein) 39367,42050 Vitellogenin-like protein,Uncharacterized protein At5g49100 (Vitellogenin-like protein) locus:4515103038;,locus:2155164; AT3G06868,AT5G49100 expressed protein Os02g0526700 protein,Os04g0405500 protein (Fragment) Q6H793,Q0JDG3 Q6H793_ORYSJ,Q0JDG3_ORYSJ Os02g0526700 OSNPB_020526700 P0458B05.15,Os04g0405500 Os04g0405500 OSNPB_040405500 ENOG411DZCC PERK4 Q9ZNQ8,A0A1P8B0D2 PERK4_ARATH,A0A1P8B0D2_ARATH Proline-rich receptor-like protein kinase PERK4 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 4) (AtPERK4),Roline-rich extensin-like receptor kinase 4 DISRUPTION PHENOTYPE: Decreased sensitivity to ABA with respect to seed germination, seedling growth and primary root tip elongation. Impaired cytoplasmic Ca(2+) accumulation in response to ABA. {ECO:0000269|PubMed:19566594}. Mutant plants showed decreased sensitivity to ABA during root tip growth. Seed germination and seedling growth were less sensitive to ABA in the perk4 mutants than in wild types. Insensitive to ABA-C. Song-2009 FUNCTION: Required during abscisic acid (ABA)-mediated activation of Ca(2+) channels. Regulates ABA signaling pathways. Modulates the expression of genes related to cell elongation and ABA signaling during root growth. {ECO:0000269|PubMed:19566594, ECO:0000269|PubMed:20009554}. 2.7.11.1 66652,56556 Proline-rich receptor-like protein kinase PERK4 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 4) (AtPERK4),Roline-rich extensin-like receptor kinase 4 integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; abscisic acid-activated signaling pathway [GO:0009738]; calcium-mediated signaling [GO:0019722]; cell surface receptor signaling pathway [GO:0007166]; root development [GO:0048364]; seed germination [GO:0009845],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Mostly expressed in inflorescence bolts. Also present in roots, stems, germinated seeds, cotyledons, pollen, stamen and stigma. {ECO:0000269|PubMed:15653807, ECO:0000269|PubMed:19566594}. locus:2046268; AT2G18470 proline-rich receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DZC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Os07g0294800 protein (Putative regulatory protein) (cDNA clone:J013037A06, full insert sequence) Q84Q21 Q84Q21_ORYSJ P0446G09.144 B1120F06.130 Os07g0294800 OSNPB_070294800 ENOG411DZC6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA repeat-containing protein NA NA NA NA NA NA NA ENOG411DZC3 CRS2B,CRS2A,MSI17.2 Q9LF14,Q9FKN4,Q8GW64,A0A1P8APF1,A8MQQ3 CRS2B_ARATH,CRS2A_ARATH,PTHC_ARATH,A0A1P8APF1_ARATH,A8MQQ3_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic (CRS2-like protein B) (Chloroplastic RNA splicing factor 2-B),Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic (CRS2-like protein A) (Chloroplastic RNA splicing factor 2-A),Peptidyl-tRNA hydrolase, chloroplastic (EC 3.1.1.29) (C-PTH),Peptidyl-tRNA hydrolase family protein FUNCTION: Required for the splicing of group IIB introns in chloroplasts. {ECO:0000250}.,FUNCTION: The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. {ECO:0000250}. ARA:AT5G16140-MONOMER;,ARA:AT5G38290-MONOMER;,ARA:AT1G18440-MONOMER; 3.1.1.29 26935,27259,31562,24020,27662 Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic (CRS2-like protein B) (Chloroplastic RNA splicing factor 2-B),Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic (CRS2-like protein A) (Chloroplastic RNA splicing factor 2-A),Peptidyl-tRNA hydrolase, chloroplastic (EC 3.1.1.29) (C-PTH),Peptidyl-tRNA hydrolase family protein chloroplast stroma [GO:0009570]; intracellular ribonucleoprotein complex [GO:0030529]; aminoacyl-tRNA hydrolase activity [GO:0004045]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; aminoacyl-tRNA hydrolase activity [GO:0004045],aminoacyl-tRNA hydrolase activity [GO:0004045] locus:2181412;,locus:2014134;,locus:2173298; AT5G16140,AT5G38290,AT1G18440 peptidyl-tRNA hydrolase Peptidyl-tRNA hydrolase, mitochondrial (EC 3.1.1.29) (M-PTH),Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic (CRS2-like protein) (Chloroplastic RNA splicing factor 2),Os05g0549600 protein Q5N9Q7,Q5ZCL8,A0A0P0WQL7 PTHM_ORYSJ,CRS2_ORYSJ,A0A0P0WQL7_ORYSJ Os01g0693900 LOC_Os01g49900 OsJ_03102 P0431H09.8,Os01g0132800 LOC_Os01g04130 OsJ_00257 OSJNBa0083M16.12,Os05g0549600 OSNPB_050549600 FUNCTION: The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. {ECO:0000250}.,FUNCTION: Required for the splicing of group IIB introns in chloroplasts. {ECO:0000250}. ENOG411DZC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os01g0956200 protein (Putative glycosyltransferase) (cDNA clone:001-206-F02, full insert sequence),Os01g0956400 protein,Os11g0575500 protein (Fragment) Q8RYJ1,A0A0P0VCZ7,A0A0P0Y3L4 Q8RYJ1_ORYSJ,A0A0P0VCZ7_ORYSJ,A0A0P0Y3L4_ORYSJ Os01g0956200 Os01g0956200 B1139B11.30 OSNPB_010956200,Os01g0956400 OSNPB_010956400,Os11g0575500 OSNPB_110575500 ENOG411EAUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXDX MXL8.16 A0A1I9LQB8,F4IXI9 A0A1I9LQB8_ARATH,F4IXI9_ARATH Dentin sialophosphoprotein-like protein 110880,130751 Dentin sialophosphoprotein-like protein locus:2094766; AT3G21290 NA Os03g0187100 protein A0A0P0VU40 A0A0P0VU40_ORYSJ Os03g0187100 OSNPB_030187100 ENOG411DXDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os01g0131600 protein (Fragment) A0A0P0UY37 A0A0P0UY37_ORYSJ Os01g0131600 OSNPB_010131600 ENOG411DXDZ KIN6 F4HR11,A0A1P8ATQ5,A0A1P8ATN3,A0A1P8ATP9,A0A1P8ATN1,A0A1P8ATS3,A0A1P8ATM8,A0A1P8ATN6,A0A1P8ATN4,A0A1P8ATR5 KN6_ARATH,A0A1P8ATQ5_ARATH,A0A1P8ATN3_ARATH,A0A1P8ATP9_ARATH,A0A1P8ATN1_ARATH,A0A1P8ATS3_ARATH,A0A1P8ATM8_ARATH,A0A1P8ATN6_ARATH,A0A1P8ATN4_ARATH,A0A1P8ATR5_ARATH Kinesin-like protein KIN-6,Kinesin-like protein 108253,104251,107717,103963,104375,107306,107207,105372,107618,107519 Kinesin-like protein KIN-6,Kinesin-like protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2198611; AT1G20060 Kinesin motor domain Kinesin-like protein KIN-6 Q6YU88 KN6_ORYSJ KIN6 Os02g0101800 LOC_Os02g01180 B1370C05.21 OJ1435_F07.11 OsJ_04995 ENOG411DXDU BUB3.3 F4I241 BUB33_ARATH Mitotic checkpoint protein BUB3.3 (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 3.3) FUNCTION: Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20 (By similarity). {ECO:0000250}. R-ATH-141430;R-ATH-174184; 34763 Mitotic checkpoint protein BUB3.3 (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 3.3) bub1-bub3 complex [GO:1990298]; condensed chromosome kinetochore [GO:0000777]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; kinetochore [GO:0000776]; mitotic checkpoint complex [GO:0033597]; phragmoplast [GO:0009524]; spindle [GO:0005819]; ubiquitin binding [GO:0043130]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly checkpoint [GO:0007094] locus:2026446; AT1G69400 Mitotic checkpoint protein Os03g0758700 protein (Transducin family protein, putative, expressed) Q10CJ9 Q10CJ9_ORYSJ Os03g0758700 LOC_Os03g55140 OSNPB_030758700 ENOG411DXDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os07g0578300 protein (Putative subtilisin-like serine protease) Q6ZL89 Q6ZL89_ORYSJ OJ1199_H01.105 Os07g0578300 OJ1065_B06.27 OsJ_24865 OSNPB_070578300 ENOG411DXDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein kinase Os10g0101000 protein (Protein kinase domain containing protein, expressed) (Putative receptor-like protein kinase) Q8W3C9 Q8W3C9_ORYSJ Os10g0101000 LOC_Os10g01100 Os10g0101000 OJ1136E01.9 OsJ_30450 OSJNBa0046L02.6 OSNPB_100101000 ENOG411DXDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease I Os02g0462300 protein,Os02g0462401 protein Q6K4Y9,A0A0P0VIS5 Q6K4Y9_ORYSJ,A0A0P0VIS5_ORYSJ Os02g0462300 OSJNBa0035A24.5 OSNPB_020462300 P0644G05.38,Os02g0462401 OSNPB_020462401 ENOG411DXDQ PAT Q9SIE1 PAT_ARATH Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (AtAAT) (AtPPA-AT) (EC 2.6.1.1) (EC 2.6.1.78) (EC 2.6.1.79) (Protein MATERNAL EFFECT EMBRYO ARREST 17) FUNCTION: Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo. {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:16623902, ECO:0000269|PubMed:20883697}. PATHWAY: Amino-acid biosynthesis; L-phenylalanine biosynthesis; L-arogenate from prephenate (L-Asp route): step 1/1.; PATHWAY: Amino-acid biosynthesis; L-phenylalanine biosynthesis; L-arogenate from prephenate (L-Glu route): step 1/1. ARA:AT2G22250-MONOMER; 2.6.1.1;2.6.1.78;2.6.1.79; 2.6.1.1; 2.6.1.78; 2.6.1.79 51000 Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (AtAAT) (AtPPA-AT) (EC 2.6.1.1) (EC 2.6.1.78) (EC 2.6.1.79) (Protein MATERNAL EFFECT EMBRYO ARREST 17) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; aspartate-prephenate aminotransferase activity [GO:0033853]; glutamate-prephenate aminotransferase activity [GO:0033854]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; aromatic amino acid family biosynthetic process, prephenate pathway [GO:0009095]; embryo development ending in seed dormancy [GO:0009793]; L-phenylalanine biosynthetic process [GO:0009094] locus:2060435; AT2G22250 Aspartate aminotransferase Os01g0871300 protein (Putative aspartate aminotransferase) (cDNA clone:001-021-G03, full insert sequence),Os01g0871300 protein (Fragment) Q5N9Z8,A0A0P0VB29 Q5N9Z8_ORYSJ,A0A0P0VB29_ORYSJ Os01g0871300 Os01g0871300 OsJ_04240 OSNPB_010871300 P0039A07.25,Os01g0871300 OSNPB_010871300 ENOG411DXDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease Os08g0440300 protein (Putative CCR4-NOT transcription complex, subunit 7) (cDNA clone:001-202-H04, full insert sequence) (cDNA clone:001-205-G12, full insert sequence) (cDNA clone:J033145G16, full insert sequence),Os08g0440300 protein (Fragment) Q6Z9G7,Q0J5E8 Q6Z9G7_ORYSJ,Q0J5E8_ORYSJ Os08g0440300 OsJ_27470 OSNPB_080440300 P0524F03.33 P0528B09.6,Os08g0440300 Os08g0440300 OSNPB_080440300 ENOG411DXDM Q8L5Z0 Q8L5Z0_ARATH ARM repeat superfamily protein (At4g33945) (Uncharacterized protein At4g33940) 49789 ARM repeat superfamily protein (At4g33945) (Uncharacterized protein At4g33940) locus:505006553; AT4G33945 armadillo repeat-containing protein Armadillo/beta-catenin repeat protein-like (Os02g0761200 protein) (cDNA clone:J033068P04, full insert sequence) Q6Z6H7 Q6Z6H7_ORYSJ Os02g0761200 OJ1175_B01.27 OsJ_08473 OSNPB_020761200 P0486G03.3 ENOG411DXDJ NPF2.10,NPF2.11 Q944G5,Q9LV10 PTR44_ARATH,PTR53_ARATH Protein NRT1/ PTR FAMILY 2.10 (AtNPF2.10) (Protein GLUCOSINOLATE TRANSPORTER-1),Protein NRT1/ PTR FAMILY 2.11 (AtNPF2.11) (Nitrate transporter 1.10) (Protein GLUCOSINOLATE TRANSPORTER-2) DISRUPTION PHENOTYPE: No effect on the total glucosinolate levels in seeds. Gtr1 and gtr2 double mutant has no detectable glucosinolate in seeds. {ECO:0000269|PubMed:22864417}.,DISRUPTION PHENOTYPE: 48% reduction in total glucosinolate levels in seeds. Gtr1 and gtr2 double mutant has no detectable glucosinolate in seeds. {ECO:0000269|PubMed:22864417}. FUNCTION: High-affinity, proton-dependent glucosinolate-specific transporter. Involved in the distribution of glucosinolates within the leaf, including import into the glucosinolate-rich S-cells located adjacent to the phloem. Involved in bidirectional long-distance transport of aliphatic but not indole glucosinolates. May be involved in removal of glucosinolates from the xylem in roots. {ECO:0000269|PubMed:22864417, ECO:0000269|PubMed:23995084}.,FUNCTION: High-affinity, proton-dependent glucosinolate-specific transporter. Involved in apoplasmic phloem-loading of glucosinolates and in bidirectional long-distance transport of aliphatic but not indole glucosinolates. May be involved in removal of glucosinolates from the xylem in roots. {ECO:0000269|PubMed:22864417, ECO:0000269|PubMed:23995084}. R-ATH-427975;R-ATH-6798695; 71040,67891 Protein NRT1/ PTR FAMILY 2.10 (AtNPF2.10) (Protein GLUCOSINOLATE TRANSPORTER-1),Protein NRT1/ PTR FAMILY 2.11 (AtNPF2.11) (Nitrate transporter 1.10) (Protein GLUCOSINOLATE TRANSPORTER-2) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glucosinolate:proton symporter activity [GO:0090448]; glucosinolate transport [GO:1901349]; phloem glucosinolate loading [GO:0090449],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glucosinolate:proton symporter activity [GO:0090448]; glucosinolate transport [GO:1901349]; phloem glucosinolate loading [GO:0090449]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Expressed in stems, flowers, siliques, roots, shoots and leaves. Expressed in veins and in adjacent mesophyll cells in leaves, and in the root vasculature with highest expression in lateral branching points. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:22864417, ECO:0000269|PubMed:23995084}.,TISSUE SPECIFICITY: Expressed in roots. Detected in shoots, stems and flowers. Expressed in veins and in the root vasculature with highest expression in lateral branching points. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:22864417, ECO:0000269|PubMed:23995084}. locus:2097910;,locus:2172249; AT3G47960,AT5G62680 Nitrate transporter Os12g0638200 protein (POT family protein, expressed),Expressed protein (Os12g0638300 protein),DNA binding protein-like (Os07g0190600 protein),Nitrate transporter, putative (Os03g0687000 protein) (POT family protein, expressed) (cDNA clone:J013002J10, full insert sequence) (cDNA clone:J013116N10, full insert sequence) (cDNA clone:J033020I22, full insert sequence),Os07g0190650 protein (Putative nitrate transporter NRT1-5),Os03g0687000 protein,Os07g0403800 protein (Fragment) Q2QLL1,Q0ILL8,Q6Z4I5,Q6AVV6,Q6Z4I4,A0A0P0W1L8,A0A0P0X5F6 Q2QLL1_ORYSJ,Q0ILL8_ORYSJ,Q6Z4I5_ORYSJ,Q6AVV6_ORYSJ,Q6Z4I4_ORYSJ,A0A0P0W1L8_ORYSJ,A0A0P0X5F6_ORYSJ LOC_Os12g44100 Os12g0638200 OsJ_37010 OSNPB_120638200,Os12g0638300 LOC_Os12g44110 Os12g0638300 OSNPB_120638300,Os07g0190600 Os07g0190600 OSJNBb0003E08.24 OSNPB_070190600,OSJNBb0024N19.9 Os03g0687000 LOC_Os03g48180 OSNPB_030687000,OSJNBb0003E08.25 Os07g0190650 OSNPB_070190650,Os03g0687000 OSNPB_030687000,Os07g0403800 OSNPB_070403800 ENOG411DXDD NRG2 Q93YU8,Q56W45 NRG2_ARATH,Q56W45_ARATH Nitrate regulatory gene2 protein (NRG2 protein),BZIP domain class transcription factor (DUF630 and DUF632) (BZIP-like protein) DISRUPTION PHENOTYPE: Under high nitrate concentration, seedlings are slightly smaller and display later flowering than wild-type. Under low nitrate concentration, seedlings appear normal. Nitrate accumulation of the seedlings and roots is significantly lower than in wild-type, however no difference of nitrate accumulation in leaves. Nitrate content differences in roots and leaves may be due to the reduced expression of NPF6.3/NRT1.1 in roots and the increased expression of NPF7.2/NRT1.8 in leaves. After nitrate treatment, altered expression of many genes involved in nitrogen-related clusters including nitrate transport and response to nitrate. {ECO:0000269|PubMed:26744214}. FUNCTION: Required for nitrate signaling. Regulates expression of the nitrate-responsive genes NIA1, NIR1, NRT2.1 and NPF6.3/NRT1.1. {ECO:0000269|PubMed:26744214}. 89979,79180 Nitrate regulatory gene2 protein (NRG2 protein),BZIP domain class transcription factor (DUF630 and DUF632) (BZIP-like protein) nucleus [GO:0005634]; cellular response to nitrate [GO:0071249]; nitrate transport [GO:0015706]; nitrogen compound transport [GO:0071705]; response to nitrate [GO:0010167]; response to nitrogen compound [GO:1901698],plasma membrane [GO:0005886] TISSUE SPECIFICITY: Highest expression levels in leaves and roots, and lowest in flowers and siliques. Also expressed in stems and seedlings. Also expressed in stromata. In flowers, expressed in the pistil, junction of filament and anther, and vascular tissue of sepals and petals. In roots, expressed in stelar cells including the pericycle, phloem and parenchyma cells. In leaves, expressed in bundle sheath, phloem and parenchyma cells of the vascular tissue. {ECO:0000269|PubMed:26744214}. locus:2081922;,locus:2205598; AT3G60320,AT1G02110 Protein of unknown function (DUF632) BZIP, putative, expressed (Os10g0562700 protein) (Putative leucine zipper protein) (cDNA, clone: J100070J24, full insert sequence) Q9AQW1 Q9AQW1_ORYSJ OSJNBb0089A17.4 LOC_Os10g41310 Os10g0562700 OsJ_32472 OSNPB_100562700 ENOG411DXDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: CACTA En Spm sub-class Os06g0271500 protein,Os04g0519200 protein,Os06g0240700 protein,Os02g0583300 protein Q0DCZ8,A0A0P0WCK2,A0A0P0WUT5,A0A0P0VKV1 Q0DCZ8_ORYSJ,A0A0P0WCK2_ORYSJ,A0A0P0WUT5_ORYSJ,A0A0P0VKV1_ORYSJ Os06g0271500 Os06g0271500 OSNPB_060271500,Os04g0519200 OSNPB_040519200,Os06g0240700 OSNPB_060240700,Os02g0583300 OSNPB_020583300 ENOG411DXDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Bisdemethoxycurcumin synthase (EC 2.3.1.211) (Curcuminoid synthase),Os07g0525900 protein (Putative chalcone synthase),Os07g0525500 protein (Putative chalcone synthase),Os07g0526400 protein (Putative chalcone synthase 1) Q8LIL0,Q69UA9,Q69UB7,Q6Z4M0 CUS_ORYSJ,Q69UA9_ORYSJ,Q69UB7_ORYSJ,Q6Z4M0_ORYSJ Os07g0271500 LOC_Os07g17010 OJ1001_C01.122 OSJNBb0002J01.6,Os07g0525900 Os07g0525900 OSNPB_070525900 P0678G09.28,P0678G09.18 Os07g0525500 OSNPB_070525500,Os07g0526400 OSJNBa0077J18.9 OSNPB_070526400 FUNCTION: Plant-specific type III polyketide synthase (PKS) that catalyzes the one-pot formation of the C6-C7-C6 diarylheptanoid scaffold of bisdemethoxycurcumin by the condensation of two molecules of 4-coumaroyl-CoA and one molecule of malonyl-CoA. {ECO:0000269|PubMed:21041675}. ENOG411DXDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os12g0231000 protein (POT family protein, expressed) (cDNA clone:J023003I19, full insert sequence) Q0IPA1 Q0IPA1_ORYSJ Os12g0231000 LOC_Os12g12934 Os12g0231000 OSNPB_120231000 ENOG411DXDA GLUTRBP Q9LU39 GLUBP_ARATH Glutamyl-tRNA reductase-binding protein, chloroplastic (AtGluTRBP) (GluTR-binding protein) (Protein PROTON GRADIENT REGULATION 7) DISRUPTION PHENOTYPE: Reduced growth, slightly pale green leaves, reduced levels of chlorophyll and heme, and low non-photochemical quenching (NPQ). {ECO:0000269|PubMed:20657737, ECO:0000269|PubMed:22180625}. Semi-dwarf; Slightly pale green-K. Niyogi-2010 FUNCTION: Involved in the regulation of glutamyl-tRNA reductase (GluTR) which is important for the synthesis and distribution of 5-aminolevulinate, a precursor in heme and chlorophyll biosynthesis (PubMed:22180625). Stimulates GluTR activity and regulates glutamate-1-semialdehyde release. May play a role in heme metabolism (PubMed:24753615). Necessary for efficient photosynthetic electron transport in chloroplasts (PubMed:20657737). 35463 Glutamyl-tRNA reductase-binding protein, chloroplastic (AtGluTRBP) (GluTR-binding protein) (Protein PROTON GRADIENT REGULATION 7) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; protein complex [GO:0043234]; cofactor binding [GO:0048037]; protein anchor [GO:0043495]; chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; photosynthetic electron transport chain [GO:0009767]; positive regulation of heme biosynthetic process [GO:0070455]; post-embryonic development [GO:0009791]; tetrapyrrole biosynthetic process [GO:0033014] locus:2094741; AT3G21200 NA Os08g0254900 protein (cDNA clone:J013159O15, full insert sequence) Q0J6W9 Q0J6W9_ORYSJ Os08g0254900 Os08g0254900 OSNPB_080254900 ENOG411DXDB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os01g0597600 protein A2ZV22 A2ZV22_ORYSJ Os01g0597600 OsJ_02475 OSNPB_010597600 ENOG411DXDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0496800 protein (Putative receptor-like protein kinase) (cDNA clone:001-200-B02, full insert sequence) Q654J4 Q654J4_ORYSJ Os06g0496800 OSNPB_060496800 P0036C11.2 ENOG411DXD8 Q6DYE4 Y1609_ARATH Uncharacterized protein At1g26090, chloroplastic 49908 Uncharacterized protein At1g26090, chloroplastic chloroplast [GO:0009507]; plastoglobule [GO:0010287]; ATP binding [GO:0005524] locus:2028820; AT1G26090 Anion-transporting ATPase Os02g0711200 protein (cDNA clone:002-103-H12, full insert sequence) Q0DY73 Q0DY73_ORYSJ Os02g0711200 Os02g0711200 OSNPB_020711200 ENOG411DXD9 PYRP2 Q9LDD5 PYRP2_ARATH 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic (AtPyrP2) (EC 3.1.3.104) (5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase) (ARPP phosphatase) (Haloacid dehalogenase-like hydrolase domain-containing protein) FUNCTION: Catalyzes the dephosphorylation of 5-amino-6-(5-phospho-D-ribitylamino)uracil, also known as ARPP, but has no activity toward flavin mononucleotide (FMN) (PubMed:27490826). {ECO:0000269|PubMed:27490826}. 3.1.3.104 42204 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic (AtPyrP2) (EC 3.1.3.104) (5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase) (ARPP phosphatase) (Haloacid dehalogenase-like hydrolase domain-containing protein) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; phosphatase activity [GO:0016791]; protein self-association [GO:0043621]; protein phosphorylation [GO:0006468]; riboflavin biosynthetic process [GO:0009231] locus:2123141; AT4G11570 phosphatase Os09g0569100 protein (Putative genetic modifier) (cDNA clone:J023117I03, full insert sequence) Q652P6 Q652P6_ORYSJ Os09g0569100 OJ1003_C09.19 OsJ_30407 OSNPB_090569100 ENOG411DXD4 CFIS2 Q8GXS3 CFIS2_ARATH Pre-mRNA cleavage factor Im 25 kDa subunit 2 FUNCTION: Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. Involved in association with CPSF6 or CPSF7 in pre-MRNA 3'-end poly(A) site cleavage and poly(A) addition. NUDT21/CPSF5 binds to cleavage and polyadenylation RNA substrates. The homodimer mediates simultaneous sequence-specific recognition of two 5'-UGUA-3' elements within the pre-mRNA. Binds to, but does not hydrolyze mono- and di-adenosine nucleotides. May have a role in mRNA export. {ECO:0000250|UniProtKB:O43809}. R-ATH-72163; 22830 Pre-mRNA cleavage factor Im 25 kDa subunit 2 mRNA cleavage factor complex [GO:0005849]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; mRNA polyadenylation [GO:0006378] locus:2131839; AT4G25550 cleavage and polyadenylation specificity factor Os04g0683100 protein,Os04g0683100 protein (Fragment) B9FDD2,A0A0P0WGI0 B9FDD2_ORYSJ,A0A0P0WGI0_ORYSJ Os04g0683100 OsJ_16671 OSNPB_040683100,Os04g0683100 OSNPB_040683100 ENOG411DXD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0165500 protein,Os01g0888022 protein (Fragment) Q6H4X7,A0A0P0VBE3 Q6H4X7_ORYSJ,A0A0P0VBE3_ORYSJ Os02g0165500 OSJNBa0023I17.22 OSJNBa0085K21.6 OSNPB_020165500,Os01g0888022 OSNPB_010888022 ENOG411DXD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SERPIN Putative serpin-Z12 (OrysaZ12),Os01g0267300 protein Q5NBM0,A0A0P0V0Z0 SPZ12_ORYSJ,A0A0P0V0Z0_ORYSJ Os01g0267300 LOC_Os01g16200 P0011D01.15,Os01g0267300 OSNPB_010267300 FUNCTION: Probable serine protease inhibitor. {ECO:0000250}. ENOG411DXD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0881966 protein (Fragment) A0A0P0VBB0 A0A0P0VBB0_ORYSJ Os01g0881966 OSNPB_010881966 ENOG411DXD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uroporphyrinogen-III synthase HemD Os05g0122001 protein A0A0P0WHA6 A0A0P0WHA6_ORYSJ Os05g0122001 OSNPB_050122001 ENOG411DXD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6AVZ5 Q6AVZ5_ORYSJ prx68 Os05g0135000 OsJ_17023 OSNPB_050135000 P0519E07.10 ENOG411DXD2 PIAL2 F4JYG0 PIAL2_ARATH E4 SUMO-protein ligase PIAL2 (EC 2.3.2.-) (Protein INHIBITOR OF ACTIVATED STAT-LIKE 2) DISRUPTION PHENOTYPE: No obvious growth difference under standard greenhouse conditions. Altered sulfur metabolism. Reduced growth in high osmotic pressure (mannitol) and in response to abscisic acid (ABA), but enhanced growth and fitness in high salt (NaCl) condition. Abnormal steady state levels of SUMO conjugates in various conditions. {ECO:0000269|PubMed:25415977}. FUNCTION: E4-type SUMO ligase that promotes SUMO chain formation in a SCE1-dependent manner and thus contributes to a pathway for proteolytic removal of sumoylation substrates. Involved in stress responses and sulfur metabolism. {ECO:0000269|PubMed:25415977}. PATHWAY: Protein modification; protein sumoylation. {ECO:0000269|PubMed:25415977}. 2.3.2.- 83109 E4 SUMO-protein ligase PIAL2 (EC 2.3.2.-) (Protein INHIBITOR OF ACTIVATED STAT-LIKE 2) nucleus [GO:0005634]; ligase activity [GO:0016874]; SUMO transferase activity [GO:0019789]; zinc ion binding [GO:0008270]; positive regulation of sulfur metabolic process [GO:0051176]; protein sumoylation [GO:0016925]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, and, at low levels, in siliques and old leaves. {ECO:0000269|PubMed:25415977}. locus:2160417; AT5G41580 MIZ/SP-RING zinc finger Os06g0164000 protein (Putative transcription factor) Q5VRS8 Q5VRS8_ORYSJ Os06g0164000 Os06g0164000 OsJ_20237 OSJNBa0015I14.9 OSNPB_060164000 ENOG411DXD3 CHY1 Q9LKJ1,Q1PEY5,Q6NMB0,A0A1P8AX47,A0A1P8B0L8 HIBC1_ARATH,HIBC2_ARATH,HIBC3_ARATH,A0A1P8AX47_ARATH,A0A1P8B0L8_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 (EC 3.1.2.-) (EC 3.1.2.4) (CoA-thioester hydrolase CHY1),Probable 3-hydroxyisobutyryl-CoA hydrolase 2 (EC 3.1.2.4),Probable 3-hydroxyisobutyryl-CoA hydrolase 3 (EC 3.1.2.4),ATP-dependent caseinolytic (Clp) protease/crotonase family protein DISRUPTION PHENOTYPE: Resistant to inhibition of root elongation and promotion of lateral root formation by the auxin precursor indole-3-butyric acid (IBA). Deficiency of benzoic acid-containing glucosinolates in the seeds. Resistance to the pro-herbicide 2,4-dichlorophenoxybutyric acid (2,4-DB). {ECO:0000269|PubMed:11404361, ECO:0000269|PubMed:15280033, ECO:0000269|PubMed:19538395}. resistant to the inhibition of root elongation caused by 5 microM indole-3-butyric acid (IBA); fails to induce normal number of lateral roots when treated with 5 microM IBA; exhibits shorter hypocotyl than wt when grown in the dark without sucrose but has a normal hypocotyl when grown in the dark with 0.5% sucrose; no visible phenotype in aerial morphology; defective in seed storage lipid utilization. Insensitive to IBA-B. Bartel-2001 FUNCTION: Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance. {ECO:0000269|PubMed:11404361, ECO:0000269|PubMed:15280033, ECO:0000269|PubMed:17580301, ECO:0000269|PubMed:19529827, ECO:0000269|PubMed:19538395}.,FUNCTION: Involved in valine catabolism. {ECO:0000250}. MISCELLANEOUS: Loss of function mutants are defective in beta-oxidization of fatty acids and in the conversion of indole-3-butyric acid (IBA) to indole-3-acetic acid (IAA). These inhibitions may be due to the accumulation of a toxic intermediate. The mutants are also less tolerant to freezing stress after cold acclimation. PATHWAY: Amino-acid degradation; L-valine degradation. ARA:AT5G65940-MONOMER;,ARA:AT2G30650-MONOMER;,ARA:AT2G30660-MONOMER; 3.1.2.4; Metabolic pathways (01100),beta-Alanine metabolism (00410),Propanoate metabolism (00640),Valine, leucine and isoleucine degradation (00280) 3.1.2.-; 3.1.2.4,3.1.2.4 42073,42256,42567,36220,38967 3-hydroxyisobutyryl-CoA hydrolase 1 (EC 3.1.2.-) (EC 3.1.2.4) (CoA-thioester hydrolase CHY1),Probable 3-hydroxyisobutyryl-CoA hydrolase 2 (EC 3.1.2.4),Probable 3-hydroxyisobutyryl-CoA hydrolase 3 (EC 3.1.2.4),ATP-dependent caseinolytic (Clp) protease/crotonase family protein peroxisome [GO:0005777]; 3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860]; response to cold [GO:0009409]; valine catabolic process [GO:0006574],peroxisome [GO:0005777]; 3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860]; valine catabolic process [GO:0006574],3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860]; peptidase activity [GO:0008233] DEVELOPMENTAL STAGE: Induced during post-germinative growth. Detected in imbibed seeds. {ECO:0000269|PubMed:15280033}. TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:15280033}. locus:2152069;,locus:2054517;,locus:2054437; AT5G65940,AT2G30650,AT2G30660 3-hydroxyisobutyryl-CoA hydrolase Os12g0264500 protein (Fragment) Q0IP17,A0A0P0Y8U1 Q0IP17_ORYSJ,A0A0P0Y8U1_ORYSJ Os12g0264500 Os12g0264500 OSNPB_120264500,Os12g0264500 OSNPB_120264500 ENOG411EAJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHA0 DVL8 Q6IM93 Q6IM93_ARATH DVL8 (ROTUNDIFOLIA like 7) 9148 DVL8 (ROTUNDIFOLIA like 7) shoot system development [GO:0048367] locus:4010713835; AT3G55515 rotundifolia like 7 NA NA NA NA NA NA NA ENOG411EHA7 Q94BV1 Q94BV1_ARATH At5g54141/$At5g54141 6761 At5g54141/$At5g54141 locus:504954908; AT5G54145 NA NA NA NA NA NA NA NA ENOG411E2IP DHS2 Q00218,F4JIZ3 AROG_ARATH,F4JIZ3_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DAHP synthase 2) (Phospho-2-keto-3-deoxyheptonate aldolase 2),Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 1/7.,PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 1/7. {ECO:0000256|RuleBase:RU363071}. Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 2.5.1.54 56149,38651 Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DAHP synthase 2) (Phospho-2-keto-3-deoxyheptonate aldolase 2),Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; 3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423],chloroplast [GO:0009507]; 3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423] locus:2005526; AT4G33510 3-deoxy-D-arabino-heptulosonate 7-phosphate NA NA NA NA NA NA NA ENOG411E2R3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411E2R1 F24J13.21 Q27GK5,Q6ID88,Q9S843 Q27GK5_ARATH,Q6ID88_ARATH,Q9S843_ARATH Octicosapeptide/Phox/Bem1p family protein (Uncharacterized protein At3g26510),AT3G26510 protein (At3g26510) (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein At3g26510),At1g70640 (Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein) (Uncharacterized protein F24J13.21) (Uncharacterized protein F5A18.18) 23502,21014,19158 Octicosapeptide/Phox/Bem1p family protein (Uncharacterized protein At3g26510),AT3G26510 protein (At3g26510) (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein At3g26510),At1g70640 (Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein) (Uncharacterized protein F24J13.21) (Uncharacterized protein F5A18.18) locus:2088862;,locus:2033595; AT3G26510,AT1G70640 octicosapeptide Phox Bem1p (PB1) domain-containing protein Os11g0444900 protein (PB1 domain containing protein, expressed) (PB1 domain, putative) (cDNA, clone: J100090H07, full insert sequence),Os11g0444700 protein (PB1 domain containing protein, expressed) (PB1 domain, putative) (cDNA clone:001-040-H08, full insert sequence) (cDNA clone:J013061N18, full insert sequence) Q53KV1,Q53KV7 Q53KV1_ORYSJ,Q53KV7_ORYSJ Os11g0444900 LOC_Os11g25800 OsJ_13729 OSNPB_110444900,LOC_Os11g25780 Os11g0444700 OsJ_13728 OSNPB_110444700 ENOG411E2R0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Component of the NF-Y HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters Nuclear transcription factor Y subunit B-2 (OsNF-YB-2) (Transcriptional activator HAP3A),Os01g0834400 protein (Fragment) Q5QMG3,A0A0P0VA75 NFYB2_ORYSJ,A0A0P0VA75_ORYSJ NFYB2 HAP3A Os01g0834400 LOC_Os01g61810 P0460C04.37 P0506B12.4,Os01g0834400 OSNPB_010834400 FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}. ENOG411E2R7 Q9SJD5 Q9SJD5_ARATH At2g04340 (Cytoplasmic dynein 2 light intermediate chain) (Expressed protein) (Uncharacterized protein At2g04340) 20148 At2g04340 (Cytoplasmic dynein 2 light intermediate chain) (Expressed protein) (Uncharacterized protein At2g04340) locus:2058394; AT2G04340 NA Os09g0478400 protein Q651X4 Q651X4_ORYSJ Os09g0478400 OSNPB_090478400 P0556A05.35 ENOG411E2R6 ndhS Q9T0A4 NDHS_ARATH NAD(P)H-quinone oxidoreductase subunit S, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit S) (NDH subunit S) (NADH-plastoquinone oxidoreductase subunit S) (Protein CHLORORESPIRATORY REDUCTION 31) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:21505067}. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (Probable). Required for the efficient operation of ferredoxin-dependent plastoquinone reduction. Forms the electron donor-binding subcomplex in association with the NDHT and NDHU subunits (PubMed:21505067, PubMed:24225949). {ECO:0000269|PubMed:21505067, ECO:0000269|PubMed:24225949, ECO:0000305}. 1.6.5.- 27727 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit S) (NDH subunit S) (NADH-plastoquinone oxidoreductase subunit S) (Protein CHLORORESPIRATORY REDUCTION 31) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; oxidoreductase activity [GO:0016491]; quinone binding [GO:0048038]; photosynthetic electron transport chain [GO:0009767]; transport [GO:0006810] locus:2138091; AT4G23890 Protein of unknown function (DUF3252) Os07g0196200 protein Q6ZDP0 Q6ZDP0_ORYSJ Os07g0196200 Os07g0196200 OJ1715_A07.30 OsJ_23441 OSNPB_070196200 P0589E08.13 ENOG411E2R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os03g0333800 protein) (cDNA clone:J013065M24, full insert sequence) Q10LV3 Q10LV3_ORYSJ Os03g0333800 LOC_Os03g21600 Os03g0333800 OSNPB_030333800 ENOG411E2R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os08g0106501 protein (cDNA, clone: J100089N23, full insert sequence) Q6ZD78 Q6ZD78_ORYSJ Os08g0106501 OJ1300_E01.23 OsJ_25756 OSNPB_080106501 P0450B04.8 ENOG411E2R8 PNSB5 Q9FG89 PNSB5_ARATH Photosynthetic NDH subunit of subcomplex B 5, chloroplastic (Protein PnsB5) (NAD(P)H dehydrogenase 18) Decreased post-illumination chlorophyll fluorescence-T. Shikanai-2009 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 23746 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic (Protein PnsB5) (NAD(P)H dehydrogenase 18) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; response to oxidative stress [GO:0006979]; transport [GO:0006810] locus:2170827; AT5G43750 NA Os01g0929100 protein (Fragment),Os01g0929100 protein (cDNA clone:006-207-H04, full insert sequence) (cDNA clone:006-212-A09, full insert sequence) (cDNA clone:J013117F22, full insert sequence) Q0JGD3,Q5JK31,A0A0P0VCF1 Q0JGD3_ORYSJ,Q5JK31_ORYSJ,A0A0P0VCF1_ORYSJ Os01g0929100 Os01g0929100 OSNPB_010929100,Os01g0929100 OSJNBa0052O12.18-1 OSNPB_010929100,Os01g0929100 OSNPB_010929100 ENOG411E2RC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0503400 protein (Fragment) A0A0P0Y2Q9 A0A0P0Y2Q9_ORYSJ Os11g0503400 OSNPB_110503400 ENOG411E2RB F26K24.22 B9DG73,Q9SF06,F4J8J7,F4J7I5 B9DG73_ARATH,Q9SF06_ARATH,F4J8J7_ARATH,F4J7I5_ARATH AT3G11930 protein (Adenine nucleotide alpha hydrolases-like superfamily protein),AT3g11930/MEC18.3 (Adenine nucleotide alpha hydrolases-like superfamily protein) (F26K24.22 protein) (MEC18.3/MEC18.3),Adenine nucleotide alpha hydrolases-like superfamily protein 24758,21529,21458,21600 AT3G11930 protein (Adenine nucleotide alpha hydrolases-like superfamily protein),AT3g11930/MEC18.3 (Adenine nucleotide alpha hydrolases-like superfamily protein) (F26K24.22 protein) (MEC18.3/MEC18.3),Adenine nucleotide alpha hydrolases-like superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; response to stress [GO:0006950],hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2081531; AT3G11930 Universal stress protein Os03g0750000 protein A0A0N7KI21 A0A0N7KI21_ORYSJ Os03g0750000 OSNPB_030750000 ENOG411E2RG RPS13,EMB3137 P42732,B3H631 RR13_ARATH,B3H631_ARATH 30S ribosomal protein S13, chloroplastic (CS13),Ribosomal protein S13/S18 family Embryo defective; Preglobular / Globular-D. Meinke-2011 FUNCTION: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. {ECO:0000250}. 19097,14412 30S ribosomal protein S13, chloroplastic (CS13),Ribosomal protein S13/S18 family chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; small ribosomal subunit [GO:0015935]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412],ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2145618; AT5G14320 Ribosomal protein S13 30S ribosomal protein S13, putative, expressed (Chloroplast 30S ribosomal protein S13) (Os03g0704000 protein) (Putative 30S ribosomal protein S13) Q75IA5 Q75IA5_ORYSJ OSJNBa0004L11.5 Os03g0704000 LOC_Os03g49710 OsJ_12269 OSNPB_030704000 ENOG411E2RF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2RE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain-containing protein 90-like NA NA NA NA NA NA NA ENOG411E2RD F4F15.330 Q94JX8 Q94JX8_ARATH At3g52220 (Leukocyte immunoglobulin-like receptor family A protein) (Uncharacterized protein F4F15.330) R-ATH-6798695; 27540 At3g52220 (Leukocyte immunoglobulin-like receptor family A protein) (Uncharacterized protein F4F15.330) locus:2083785; AT3G52220 multiple myeloma tumor-associated protein Os08g0558700 protein (cDNA clone:J033134F18, full insert sequence) Q6YZI7 Q6YZI7_ORYSJ Os08g0558700 Os08g0558700 OsJ_28270 OSNPB_080558700 P0562A06.9 ENOG411E2RK HTR2; HTR3; HTR13; HTR9; HTR1,HTR4; HTR5; HTR8,MGH3,H3.3 Q9FX60,Q9LR02,P59226,Q9LXU8,P59169,Q9FXI7,Q9FKQ3,A8MRL0 H3L1_ARATH,H3L3_ARATH,H32_ARATH,H3L4_ARATH,H33_ARATH,H3L2_ARATH,H3L5_ARATH,A8MRL0_ARATH Histone H3-like 1,Histone H3-like 3,Histone H3.2 (Histone H3.1),Histone H3-like 4,Histone H3.3 (Histone H3.2),Histone H3-like 2 (Male gamete-specific histone H3),Histone H3-like 5,Histone superfamily protein DISRUPTION PHENOTYPE: No visible phenotype. The high redundancy of histones H3 might compensate for this mutation. {ECO:0000269|PubMed:16262706}. No visible phenotype. FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity). {ECO:0000250}.,FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.,FUNCTION: Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. R-ATH-1266695;R-ATH-212300;R-ATH-2299718;R-ATH-2559580;R-ATH-2559582;R-ATH-3214841;R-ATH-3214842;R-ATH-3214847;R-ATH-3214858;R-ATH-3247509;R-ATH-5578749;R-ATH-5693565;R-ATH-983231; 15358,15402,15268,14912,15406,15725,15591,18702 Histone H3-like 1,Histone H3-like 3,Histone H3.2 (Histone H3.1),Histone H3-like 4,Histone H3.3 (Histone H3.2),Histone H3-like 2 (Male gamete-specific histone H3),Histone H3-like 5,Histone superfamily protein nucleosome [GO:0000786]; nucleus [GO:0005634]; nucleosomal DNA binding [GO:0031492]; protein heterodimerization activity [GO:0046982]; nucleosome assembly [GO:0006334],kinetochore [GO:0000776]; nucleosome [GO:0000786]; nucleus [GO:0005634]; centromeric DNA binding [GO:0019237]; nucleosomal DNA binding [GO:0031492]; protein heterodimerization activity [GO:0046982]; kinetochore assembly [GO:0051382]; mitotic sister chromatid segregation [GO:0000070]; nucleosome assembly [GO:0006334],generative cell nucleus [GO:0048555]; kinetochore [GO:0000776]; nucleosome [GO:0000786]; nucleus [GO:0005634]; centromeric DNA binding [GO:0019237]; nucleosomal DNA binding [GO:0031492]; protein heterodimerization activity [GO:0046982]; double fertilization forming a zygote and endosperm [GO:0009567]; kinetochore assembly [GO:0051382]; mitotic sister chromatid segregation [GO:0000070]; nucleosome assembly [GO:0006334]; pollen sperm cell differentiation [GO:0048235],nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982] DEVELOPMENTAL STAGE: Expressed during the S phase. {ECO:0000269|PubMed:15010610}.,DEVELOPMENTAL STAGE: Expressed in a replication-independent manner. Strong expression in the generative cell of early bicellular pollen, but not detected in late bicellular and tricellular pollen. {ECO:0000269|PubMed:15010610, ECO:0000269|PubMed:16262706}.,DEVELOPMENTAL STAGE: Detected only in the generative cell and the sperm-cell of late bicellular and tricellular pollen. Not detected in pollen vegetative cells. Replication-independent expression. {ECO:0000269|PubMed:16262706}. TISSUE SPECIFICITY: Expressed in roots, seedlings, leaves, buds and open flowers. {ECO:0000269|PubMed:16262706}.,TISSUE SPECIFICITY: Expressed in roots, seedlings, leaves and open flowers. {ECO:0000269|PubMed:16262706}.,TISSUE SPECIFICITY: Expressed in inflorescences, buds and seedlings. {ECO:0000269|PubMed:16262706}.,TISSUE SPECIFICITY: Expressed in roots, seedlings, leaves buds and open flowers. {ECO:0000269|PubMed:16262706}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16262706}.,TISSUE SPECIFICITY: Pollen specific. {ECO:0000269|PubMed:16262706}. locus:2009907;,locus:2005679;,locus:2086696;locus:2142424;locus:2142439;locus:2168277;locus:2195341;,locus:2182320;,locus:2140025;locus:2183795;,locus:2035415;,locus:2168267;,locus:2140010; AT1G13370,AT1G75600,AT1G09200AT3G27360;AT5G10390;AT5G10400;AT5G65360;,AT5G12910,AT4G40030AT4G40040;AT5G10980;,AT1G19890,AT5G65350,AT4G40030 histone H3 Histone H3.2,Histone H3.3 (H3.2),Histone H3, putative, expressed (Os12g0415800 protein),Os02g0457100 protein,Os04g0419600 protein,Os06g0160100 protein (Fragment),Os04g0450800 protein,Os06g0130900 protein (Fragment),Os02g0457300 protein Q2RAD9,Q0JCT1,Q2QSW7,A0A0N7KF87,A0A0P0WA64,A0A0P0WSK4,A0A0P0WBB0,A0A0P0WRT9,A0A0P0VIN6 H32_ORYSJ,H33_ORYSJ,Q2QSW7_ORYSJ,A0A0N7KF87_ORYSJ,A0A0P0WA64_ORYSJ,A0A0P0WSK4_ORYSJ,A0A0P0WBB0_ORYSJ,A0A0P0WRT9_ORYSJ,A0A0P0VIN6_ORYSJ Os01g0866200 LOC_Os01g64640 OsJ_004096 P0505D12.33; Os04g0419600 LOC_Os04g34240 OsJ_014206 OSJNBb0108J11.17; Os05g0438700 LOC_Os05g36280 OSJNBb0042J17.11; H3R-11 Os06g0159501 LOC_Os06g06460 OsJ_019386 P0702F05.33; Os06g0160001 P0681F10.3 P0702F05.38; Os06g0160100 LOC_Os06g06510 P0681F10.4 P0702F05.39; H3R-21 Os11g0155900 LOC_Os11g05730 OSJNBb0030I09,H3 RH3 RH3.2A Os03g0390600 LOC_Os03g27310 OSJNBa0017N12.5; Os04g0450800 LOC_Os04g37780; Os06g0130900 LOC_Os06g04030 P0493C11.10,Os12g0415800 LOC_Os12g22680 Os12g0415800 OsJ_35872 OSNPB_120415800,Os02g0457100 OSNPB_020457100,Os04g0419600 OSNPB_040419600,Os06g0160100 OSNPB_060160100,Os04g0450800 OSNPB_040450800,Os06g0130900 OSNPB_060130900,Os02g0457300 OSNPB_020457300 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.,FUNCTION: Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. ENOG411E2RJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0182100 protein A0A0P0Y7M9 A0A0P0Y7M9_ORYSJ Os12g0182100 OSNPB_120182100 ENOG411E2RI Q8GW91,A0A1I9LR82 Q8GW91_ARATH,A0A1I9LR82_ARATH At3g02820 (Putative CCHC-type zinc finger protein) (Zinc knuckle (CCHC-type) family protein),Zinc knuckle (CCHC-type) family protein 31835,33961 At3g02820 (Putative CCHC-type zinc finger protein) (Zinc knuckle (CCHC-type) family protein),Zinc knuckle (CCHC-type) family protein replication fork protection complex [GO:0031298]; DNA binding [GO:0003677]; zinc ion binding [GO:0008270]; cell cycle [GO:0007049]; cellular response to DNA damage stimulus [GO:0006974]; DNA replication checkpoint [GO:0000076]; regulation of nuclear cell cycle DNA replication [GO:0033262]; replication fork arrest [GO:0043111]; replication fork protection [GO:0048478],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; cell cycle [GO:0007049]; cellular response to DNA damage stimulus [GO:0006974]; replication fork protection [GO:0048478] locus:2075507; AT3G02820 Replication Fork Protection Component Swi3 CCHC-type zinc finger protein-like (Os02g0762200 protein) (cDNA clone:J033150B14, full insert sequence) Q6Z6G7 Q6Z6G7_ORYSJ Os02g0762200 OSNPB_020762200 P0486G03.15 ENOG411E2RM MJK13.14 Q9LDK1,Q9C930,Q940M6 Q9LDK1_ARATH,Q9C930_ARATH,Q940M6_ARATH AT3g15480/MJK13_14 (Fiber (DUF1218)) (MJK13.14 protein),At1g52910 (Fiber (DUF1218)) (Uncharacterized protein At1g52910) (Uncharacterized protein F14G24.18),At4g27438 (At4g27438/At4g27438) (Fiber (DUF1218)) 19416,19305,19182 AT3g15480/MJK13_14 (Fiber (DUF1218)) (MJK13.14 protein),At1g52910 (Fiber (DUF1218)) (Uncharacterized protein At1g52910) (Uncharacterized protein F14G24.18),At4g27438 (At4g27438/At4g27438) (Fiber (DUF1218)) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506],integral component of membrane [GO:0016021] locus:2090156;,locus:2011556;,locus:505006522; AT3G15480,AT1G52910,AT4G27435 Protein of unknown function (DUF1218) Os07g0462200 protein (cDNA clone:006-211-F08, full insert sequence) Q6Z3C2 Q6Z3C2_ORYSJ Os07g0462200 OSNPB_070462200 P0038F09.45 ENOG411E2RS Q8LDN2,B3H7M8 Q8LDN2_ARATH,B3H7M8_ARATH Ankyrin repeat family protein (At3g09890) (Uncharacterized protein At3g09890),Ankyrin repeat family protein 22105,17238 Ankyrin repeat family protein (At3g09890) (Uncharacterized protein At3g09890),Ankyrin repeat family protein cytosol [GO:0005829] locus:2085094; AT3G09890 Ankyrin repeat Os03g0145800 protein (Fragment) Q0DV72,A0A0P0VT12 Q0DV72_ORYSJ,A0A0P0VT12_ORYSJ Os03g0145800 OSNPB_030145800 ENOG411E2RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os05g0322900 protein (Putative WRKY transcription factor) (WRKY-type transcription factor 45-1) (WRKY45) (cDNA clone:001-015-C02, full insert sequence) (cDNA clone:J013058O04, full insert sequence),Os05g0322900 protein Q5W6D6,A0A0P0WKZ9,A0A0P0WKM2 Q5W6D6_ORYSJ,A0A0P0WKZ9_ORYSJ,A0A0P0WKM2_ORYSJ WRKY45-1 Os05g0322900 OSJNBb0109A13.9 OSNPB_050322900 P0018A03.1,Os05g0322900 OSNPB_050322900 ENOG411E2RQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family Hsp20/alpha crystallin family protein, expressed (Os10g0159600 protein) (cDNA clone:002-105-E01, full insert sequence) Q7G566 Q7G566_ORYSJ Os10g0159600 LOC_Os10g07200 Os10g0159600 OsJ_30786 OSNPB_100159600 ENOG411E2RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0210300 protein) Q10Q45 Q10Q45_ORYSJ Os03g0210300 LOC_Os03g11190 OSNPB_030210300 ENOG411E2RV GLP7 P92998 GL11_ARATH Germin-like protein subfamily 1 member 1 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 23195 Germin-like protein subfamily 1 member 1 apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2194569; AT1G10460 germin-like protein Germin-like protein 3-1 Q8H021 GL31_ORYSJ Os03g0179100 LOC_Os03g08150 OsJ_009284 OSJNBa0050H14.9 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E2RU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 Expressed protein (LOB domain protein) (Os03g0149000 protein) Q5KQR7 Q5KQR7_ORYSJ CRLL1 LOC_Os03g05500 Os03g0149000 OSNPB_030149000 ENOG411E2RT HGPT Q8L8L7,F4IA25 Q8L8L7_ARATH,F4IA25_ARATH At1g71750 (Hypoxanthine ribosyl transferase, putative) (Hypoxanthine-guanine phosphoribosyltransferase),Hypoxanthine-guanine phosphoribosyltransferase ARA:AT1G71750-MONOMER;MetaCyc:AT1G71750-MONOMER; R-ATH-74217; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Metabolic pathways (01100),Drug metabolism - other enzymes (00983) 20879,22074 At1g71750 (Hypoxanthine ribosyl transferase, putative) (Hypoxanthine-guanine phosphoribosyltransferase),Hypoxanthine-guanine phosphoribosyltransferase cytoplasm [GO:0005737]; hypoxanthine phosphoribosyltransferase activity [GO:0004422]; purine ribonucleoside salvage [GO:0006166],cytosol [GO:0005829]; hypoxanthine phosphoribosyltransferase activity [GO:0004422]; guanine metabolic process [GO:0046098]; hypoxanthine metabolic process [GO:0046100]; purine ribonucleoside salvage [GO:0006166]; seed germination [GO:0009845] locus:2012986; AT1G71750 phosphoribosyltransferase Hypoxanthine phosphoribosyltransferase (EC 2.4.2.8) A0A0P0WIZ3 A0A0P0WIZ3_ORYSJ Os05g0182201 OSNPB_050182201 ENOG411E2RX At17.1 Q52K81 Q52K81_ARATH At2g01340 (Plastid movement impaired protein) (Uncharacterized protein At2g01340) 23705 At2g01340 (Plastid movement impaired protein) (Uncharacterized protein At2g01340) plasma membrane [GO:0005886]; response to nematode [GO:0009624] locus:2038776; AT2G01340 NA NA NA NA NA NA NA NA ENOG411E065 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain-containing protein NAC domain-containing protein 67 (ONAC067) (OsNAC3) Q7EZT1 NAC67_ORYSJ NAC067 NAC3 Os07g0225300 LOC_Os07g12340 OSJNBa0066H10.107 P0668C05.126 FUNCTION: Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. ENOG411E064 PME68 Q8LPF3 PME68_ARATH Probable pectinesterase 68 (PE 68) (EC 3.1.1.11) (Pectin methylesterase 68) (AtPME68) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G47500-MONOMER; 3.1.1.11 40042 Probable pectinesterase 68 (PE 68) (EC 3.1.1.11) (Pectin methylesterase 68) (AtPME68) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed in young siliques. {ECO:0000269|PubMed:16622707}. locus:2169023; AT5G47500 pectinesterase Pectinesterase (EC 3.1.1.11),Os04g0553650 protein Q0JB65,A0A0P0WDD7 Q0JB65_ORYSJ,A0A0P0WDD7_ORYSJ Os04g0553500 Os04g0553500 OSNPB_040553500,Os04g0553650 OSNPB_040553650 ENOG411E067 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDP dissociation inhibitor Guanosine nucleotide diphosphate dissociation inhibitor Q8LIL4 Q8LIL4_ORYSJ OJ1001_C01.113 Os07g0271000 OSNPB_070271000 ENOG411E066 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit RING-type E3 ubiquitin transferase (EC 2.3.2.27),Os07g0513500 protein,Os03g0657100 protein (Fragment) Q10FT0,A3BKA2,A0A0N7KHR7 Q10FT0_ORYSJ,A3BKA2_ORYSJ,A0A0N7KHR7_ORYSJ Os03g0657100 LOC_Os03g45420 Os03g0657100 OSNPB_030657100,Os07g0513500 OsJ_24428 OSNPB_070513500,Os03g0657100 OSNPB_030657100 ENOG411E061 FLA1 Q9FM65 FLA1_ARATH Fasciclin-like arabinogalactan protein 1 FUNCTION: May be a cell surface adhesion protein. 44849 Fasciclin-like arabinogalactan protein 1 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; cell wall [GO:0005618]; plasma membrane [GO:0005886]; root development [GO:0048364]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Preferentially expressed in flowers. {ECO:0000269|PubMed:14645732}. locus:2162197; AT5G55730 fasciclin-like arabinogalactan protein Os08g0321000 protein (Putative fasciclin-like arabinogalactan-protein) (cDNA clone:002-117-D03, full insert sequence) (cDNA clone:002-117-D04, full insert sequence) (cDNA clone:006-203-C07, full insert sequence) (cDNA clone:J013134F13, full insert sequence) Q8H3S1 Q8H3S1_ORYSJ P0005C02.108 Os08g0321000 OSNPB_080321000 P0048E12.2 ENOG411E060 MUA22.15 Q9FMT6 Q9FMT6_ARATH Emb|CAB87702.1 40903 Emb|CAB87702.1 anchored component of membrane [GO:0031225] locus:2174713; AT5G14150 Protein of unknown function (DUF642) NA NA NA NA NA NA NA ENOG411E063 INVE Q9FK88 INVE_ARATH Alkaline/neutral invertase E, chloroplastic (A/N-INVE) (EC 3.2.1.26) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the mutant plants accumulate decreased amount of starch during the day. {ECO:0000269|PubMed:18034262}. Alkaline/neutral invertase activity in leaf extracts is about 30% lower compared to wild type. A/N invertase activity in mutant chloroplast extracts is undetectable.,No difference in germination number of leaf or siliques per plant seed production and flowering time.,No difference in sucrose content with respect to wild type however a 33% lower starch content was observable at the end of the day compared to wild type plants.,Defects in cotyledon greening under 100mM sucrose in growth medium also with glucose or fructose but not mannitol.,In this mutant the development of the photosynthetic apparatus was inhibited in the Suc+ medium while the assimilation of nitrate was enhanced. FUNCTION: Chloroplastic invertase that cleaves sucrose into glucose and fructose and is associated with the development of the photosynthetic apparatus and the assimilation of nitrogen in seedlings to control the sucrose to hexose ratio (PubMed:20304912). Participates in the carbon flux between the cytosol and plastids in leaves (PubMed:18034262). {ECO:0000269|PubMed:18034262, ECO:0000269|PubMed:20304912}. 3.2.1.26 69240 Alkaline/neutral invertase E, chloroplastic (A/N-INVE) (EC 3.2.1.26) chloroplast [GO:0009507]; glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926]; sucrose alpha-glucosidase activity [GO:0004575]; cotyledon development [GO:0048825]; starch metabolic process [GO:0005982]; sucrose catabolic process [GO:0005987] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:18034262}. locus:2171112; AT5G22510 Pfam:Invertase_neut Neutral/alkaline invertase 3, chloroplastic (OsNIN3) (EC 3.2.1.26),Os02g0529400 protein (Fragment) Q6H6N5,A0A0P0VJU8 NIN3_ORYSJ,A0A0P0VJU8_ORYSJ NIN3 Os02g0529400 LOC_Os02g32730 OsJ_06987 P0475F05.37-1 P0476H10.21-1,Os02g0529400 OSNPB_020529400 FUNCTION: Mitochondrial invertase that cleaves sucrose into glucose and fructose. {ECO:0000250|UniProtKB:Q10MC0}. ENOG411E062 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase C65 Otubain OSJNBa0060D06.9 protein (Os04g0652600 protein) (cDNA clone:002-129-C12, full insert sequence) Q7XPN5 Q7XPN5_ORYSJ Os04g0652600 Os04g0652600 OsJ_16437 OSJNBa0060D06.9 OSNPB_040652600 ENOG411E069 TRM15 A8MQN3,Q7Y207,A8MQI6 A8MQN3_ARATH,Q7Y207_ARATH,A8MQI6_ARATH GPI-anchored adhesin-like protein, putative (DUF3741),GPI-anchored adhesin-like protein, putative (DUF3741) (Uncharacterized protein At4g00440) 94690,94545,94976 GPI-anchored adhesin-like protein, putative (DUF3741),GPI-anchored adhesin-like protein, putative (DUF3741) (Uncharacterized protein At4g00440) locus:2126041; AT4G00440 Protein of unknown function (DUF3741) Expressed protein (Os10g0550000 protein) (cDNA clone:J013035P21, full insert sequence) Q94LV9 Q94LV9_ORYSJ OSJNBa0082M15.1 LOC_Os10g40250 Os10g0550000 OSNPB_100550000 ENOG411E068 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Serine/threonine-protein kinase Nek3 (EC 2.7.11.1) (NimA-related protein kinase 3) (OsNek3) Q6ZEZ5 NEK3_ORYSJ NEK3 Os07g0176600 LOC_Os07g08000 OsJ_23299 P0534H07.24 FUNCTION: May be involved in plant development processes (Probable). May function downstream of DCW11 in retrograde signaling from the mitochondria to the nucleus. Seems to be involved in the mechanism of cytoplasmic male sterility (CMS) occurrence (PubMed:19224952). {ECO:0000269|PubMed:19224952, ECO:0000305|PubMed:17886359}. MISCELLANEOUS: Expression in anthers at the tri-cellular pollen stage is down-regulated in cytoplsamic male sterility (CMS) rice lines. {ECO:0000269|PubMed:19224952}. ENOG411EH6Y F4KBY8 F4KBY8_ARATH Uncharacterized protein 13252 Uncharacterized protein locus:2163695; AT5G51390 NA NA NA NA NA NA NA NA ENOG411EH6X A0JPV5 A0JPV5_ARATH At4g21865 17344 At4g21865 locus:505006506; AT4G21865 NA NA NA NA NA NA NA NA ENOG411EH6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6T CLE40 Q9LXU0 CLE40_ARATH CLAVATA3/ESR (CLE)-related protein 40 [Cleaved into: CLE40p] DISRUPTION PHENOTYPE: Short roots with irregularly shaped root tips and following a waving pattern. Delayed differentiation of columella stem cells (CSC) daughters into columella cells (CCs). {ECO:0000269|PubMed:12743822, ECO:0000269|PubMed:19398337, ECO:0000269|PubMed:19820344}. FUNCTION: Extracellular signal peptide secreted by differentiated root cells that regulates root cell fate. Acts with ACR4 as a ligand-receptor pair in a signal transduction pathway, coordinating movement of the root tip and organization of cell divisions in the root meristem. Promotes cell differentiation in the distal root meristem in a dose-dependent manner, especially the transition from columella stem cells (CSC) daughters into columella cells (CCs). Induces ACR4 expression in root quiescent center (QC). Involved in WUX5 QC-specific expression pattern regulation. {ECO:0000269|PubMed:12743822, ECO:0000269|PubMed:16055633, ECO:0000269|PubMed:16902140, ECO:0000269|PubMed:19398337, ECO:0000269|PubMed:19820344}. 8856 CLAVATA3/ESR (CLE)-related protein 40 [Cleaved into: CLE40p] extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell fate specification [GO:0001708]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: Expressed in the entire embryo at the globular stage. Progressively restricted to the basal regions of the embryo that form the root meristem and the vasculature. After germination, detected in the differentiation zone of the stele that forms the inner layers of the root and in differentiating columella cells (CCs). {ECO:0000269|PubMed:19398337, ECO:0000269|PubMed:19820344}. TISSUE SPECIFICITY: Mostly expressed at low levels in stems and apex, and, to a lower extent, in roots, seedlings, leaves, flowers, siliques and pollen. {ECO:0000269|PubMed:12743822, ECO:0000269|PubMed:19398337, ECO:0000269|PubMed:19820344}. locus:2182325; AT5G12990 CLAVATA3 ESR-related 40 NA NA NA NA NA NA NA ENOG411EH6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EH6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Asparaginase Os04g0650700 protein A0A0P0WFZ1 A0A0P0WFZ1_ORYSJ Os04g0650700 OSNPB_040650700 ENOG411EH6S MBG8.26 Q9SVW0,Q9FFT1 Q9SVW0_ARATH,Q9FFT1_ARATH RING/U-box superfamily protein (Uncharacterized protein AT4g18110) (Uncharacterized protein F15J5.80),RING/U-box superfamily protein 24465,26100 RING/U-box superfamily protein (Uncharacterized protein AT4g18110) (Uncharacterized protein F15J5.80),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2117701;,locus:2160215; AT4G18110,AT5G54990 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EH6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0283600 protein A0A0N7KN96 A0A0N7KN96_ORYSJ Os07g0283600 OSNPB_070283600 ENOG411EH6N ATTI6 O22869 DF197_ARATH Defensin-like protein 197 (Trypsin inhibitor ATTI-6) 10192 Defensin-like protein 197 (Trypsin inhibitor ATTI-6) extracellular region [GO:0005576]; ion channel inhibitor activity [GO:0008200]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] AT2G43550 trypsin inhibitor NA NA NA NA NA NA NA ENOG411EH6K F28O9.160 Q8GX11,Q56Y90,Q9M2L6,Q3EC04,A8MRI8,A8MRP3,Q3ECX8 Q8GX11_ARATH,Q56Y90_ARATH,Q9M2L6_ARATH,Q3EC04_ARATH,A8MRI8_ARATH,A8MRP3_ARATH,Q3ECX8_ARATH At1g43668 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein F28O9.160) 10849,10581,11138,10632,10550,10398,13564 At1g43668 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein F28O9.160) lipid transport [GO:0006869] locus:1005716747;,locus:1006230744;,locus:2082623;,locus:1006230047;,locus:4010713880;,locus:4010713421;,locus:504956233; AT1G43667,AT1G43666,AT3G57310,AT2G14846,AT4G12825,AT1G07747,AT1G43665 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EH6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EH6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD binding domain of 6-phosphogluconate dehydrogenase NA NA NA NA NA NA NA ENOG411EH6C Q93Z61 Q93Z61_ARATH At1g17090/F6I1_23 (Transmembrane protein) 10401 At1g17090/F6I1_23 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2035479; AT1G17090 NA NA NA NA NA NA NA NA ENOG411EH69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EH64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH60 Q9FLU6 Q9FLU6_ARATH Uncharacterized protein At5g24570 7532 Uncharacterized protein At5g24570 locus:2153964; AT5G24570 NA NA NA NA NA NA NA NA ENOG411EH63 T2E22.17 Q9LHF8 Q9LHF8_ARATH At3g12510 (MADS-box family protein) (Uncharacterized protein At3g12510) (Uncharacterized protein T2E22.17) 19545 At3g12510 (MADS-box family protein) (Uncharacterized protein At3g12510) (Uncharacterized protein T2E22.17) locus:2092512; AT3G12510 Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411E06E Q1PDX3 Q1PDX3_ARATH AT5G12460.1 (Fringe-like protein) (Fringe-like protein (DUF604)) 50858 AT5G12460.1 (Fringe-like protein) (Fringe-like protein (DUF604)) locus:505006614; AT5G12460 Has 355 Blast hits to 351 proteins in 67 species Archae - 0 NA NA NA NA NA NA NA ENOG411E06D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Leucine Rich Repeat family protein, expressed (Os11g0208900 protein) (cDNA clone:J023102H15, full insert sequence) Q2R915 Q2R915_ORYSJ Os11g0208900 LOC_Os11g10310 Os11g0208900 OSNPB_110208900 ENOG411E06G CMTA6,CMTA5 Q9LSP8,O23463,A0A1I9LRY6,A0A1I9LRY7 CMTA6_ARATH,CMTA5_ARATH,A0A1I9LRY6_ARATH,A0A1I9LRY7_ARATH Calmodulin-binding transcription activator 6 (Ethylene-induced calmodulin-binding protein 5) (EICBP5) (Ethylene-induced calmodulin-binding protein e) (EICBP.e) (Signal-responsive protein 3),Calmodulin-binding transcription activator 5 (Ethylene-induced calmodulin-binding protein f) (EICBP.f) (Signal-responsive protein 6),Calmodulin-binding transcription activator FUNCTION: Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.,FUNCTION: Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. 95382,104847,83604,93271 Calmodulin-binding transcription activator 6 (Ethylene-induced calmodulin-binding protein 5) (EICBP5) (Ethylene-induced calmodulin-binding protein e) (EICBP.e) (Signal-responsive protein 3),Calmodulin-binding transcription activator 5 (Ethylene-induced calmodulin-binding protein f) (EICBP.f) (Signal-responsive protein 6),Calmodulin-binding transcription activator nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001077]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. locus:2086172;,locus:2130125; AT3G16940,AT4G16150 calmodulin-binding transcription activator Calmodulin-binding transcription activator CBT (CaM-binding transcription factor) (OsCBT),Os07g0490200 protein (Fragment) Q7XHR2,A0A0P0X5S7 CBT_ORYSJ,A0A0P0X5S7_ORYSJ CBT Os07g0490200 LOC_Os07g30774 P0477A12.32,Os07g0490200 OSNPB_070490200 FUNCTION: Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. ENOG411E06F HXK3 Q9FZG4,A0A1P8ARU7,A0A1P8ARU2 HXKL1_ARATH,A0A1P8ARU7_ARATH,A0A1P8ARU2_ARATH Hexokinase-like 1 protein (EC 2.7.1.1),Phosphotransferase (EC 2.7.1.-) ARA:AT1G47840-MONOMER; R-ATH-170822;R-ATH-6798695;R-ATH-70171; 2.7.1.1; 2.7.1.1,2.7.1.- 53880,41609,21543 Hexokinase-like 1 protein (EC 2.7.1.1),Phosphotransferase (EC 2.7.1.-) chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; glucokinase activity [GO:0004340]; glucose binding [GO:0005536]; hexokinase activity [GO:0004396]; mannokinase activity [GO:0019158]; cellular glucose homeostasis [GO:0001678]; glycolytic process [GO:0006096],cell [GO:0005623]; ATP binding [GO:0005524]; glucose binding [GO:0005536]; hexokinase activity [GO:0004396]; cellular glucose homeostasis [GO:0001678]; glycolytic process [GO:0006096] locus:2202410; AT1G47840 hexokinase Hexokinase-4, chloroplastic (EC 2.7.1.1) (Hexokinase II),Phosphotransferase (EC 2.7.1.-) (Fragment) Q6Z398,A0A0P0X3M1 HXK4_ORYSJ,A0A0P0X3M1_ORYSJ HXK4 Os07g0197100 LOC_Os07g09890 OsJ_23449 P0417F02.7 P0589E08.26,Os07g0197100 OSNPB_070197100 FUNCTION: Fructose and glucose phosphorylating enzyme. {ECO:0000269|PubMed:16552590}. ENOG411E06A RNS2 P42814,F4IW05 RNS2_ARATH,F4IW05_ARATH Ribonuclease 2 (EC 3.1.27.1),Ribonuclease 2 FUNCTION: May remobilize phosphate, particularly when cells senesce or when phosphate becomes limiting. R-ATH-6798695; 3.1.27.1 29153,25313 Ribonuclease 2 (EC 3.1.27.1),Ribonuclease 2 endoplasmic reticulum [GO:0005783]; ER body [GO:0010168]; intracellular [GO:0005622]; vacuole [GO:0005773]; endoribonuclease activity [GO:0004521]; ribonuclease T2 activity [GO:0033897]; RNA binding [GO:0003723]; negative regulation of autophagy [GO:0010507]; rRNA catabolic process [GO:0016075],ribonuclease T2 activity [GO:0033897]; RNA binding [GO:0003723] TISSUE SPECIFICITY: Most highly expressed in flowers, but also expressed in roots, stems, and leaves. locus:2063964; AT2G39780 Ribonuclease Os01g0897200 protein (Putative S-like RNase) Q5N865 Q5N865_ORYSJ Os01g0897200 OsJ_04405 OSNPB_010897200 P0506A10.1 P0674H09.18 ENOG411E06C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon Reticulon-like protein Q5ZC50 Q5ZC50_ORYSJ Os01g0139000 Os01g0139000 OsJ_00305 OSNPB_010139000 P0443D08.46 P0480E02.1 ENOG411E06B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os07g0100600 protein (Putative peptide transport protein),Os06g0299500 protein (Fragment) Q69LA3,A0A0P0WVI7 Q69LA3_ORYSJ,A0A0P0WVI7_ORYSJ Os07g0100600 B1026C12.10 OsJ_22763 OSNPB_070100600,Os06g0299500 OSNPB_060299500 ENOG411E06M MJM18.3 Q9LT92 Q9LT92_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 27762 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2166503; AT5G51880 P4Hc ABR017Cp, putative, expressed (Os03g0119000 protein) (cDNA clone:006-210-A11, full insert sequence) (cDNA clone:006-306-G01, full insert sequence) (cDNA clone:J023091L16, full insert sequence) Q10SL2 Q10SL2_ORYSJ LOC_Os03g02730 Os03g0119000 OsJ_09193 OSNPB_030119000 ENOG411E06N F4K2K9 F4K2K9_ARATH Exostosin family protein (Glycosyltransferase) 70381 Exostosin family protein (Glycosyltransferase) transferase activity [GO:0016740] locus:2183239; AT5G19670 exostosin family NA NA NA NA NA NA NA ENOG411E06I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411E06H Q9SV23 Q9SV23_ARATH AT4g31460/F3L17_30 (Ribosomal L28 family) (Uncharacterized protein AT4g31460) (Uncharacterized protein F3L17.30) 24066 AT4g31460/F3L17_30 (Ribosomal L28 family) (Uncharacterized protein AT4g31460) (Uncharacterized protein F3L17.30) mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2125234; AT4G31460 ribosomal protein Os07g0544900 protein Q6ZL47 Q6ZL47_ORYSJ Os07g0544900 Os07g0544900 OJ1582_D10.20 OsJ_24633 OSNPB_070544900 ENOG411E06K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY DNA binding domain containing protein expressed Os12g0116400 protein (WRKY DNA binding domain containing protein, expressed),Os11g0116900 protein (WRKY DNA binding domain containing protein, expressed) Q2QYK0,Q2RBC3 Q2QYK0_ORYSJ,Q2RBC3_ORYSJ Os12g0116400 LOC_Os12g02420 OSNPB_120116400,Os11g0116900 LOC_Os11g02480 OsJ_32730 OSNPB_110116900 ENOG411E06J EIL4,EIL5 Q9LX16,Q9FJQ5 EIL4_ARATH,EIL5_ARATH Putative ETHYLENE INSENSITIVE 3-like 4 protein,ETHYLENE INSENSITIVE 3-like 5 protein FUNCTION: Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}. 53954,63690 Putative ETHYLENE INSENSITIVE 3-like 4 protein,ETHYLENE INSENSITIVE 3-like 5 protein intracellular [GO:0005622]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion [GO:0071281]; ethylene-activated signaling pathway [GO:0009873]; regulation of transcription, DNA-templated [GO:0006355]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion [GO:0071281]; ethylene-activated signaling pathway [GO:0009873]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2184088;,locus:2171815; AT5G10120,AT5G65100 ethylene insensitive NA NA NA NA NA NA NA ENOG411E06U NDT2 Q8RWA5 NDT2_ARATH Nicotinamide adenine dinucleotide transporter 2, mitochondrial (AtNDT2) (NAD(+) transporter 2) FUNCTION: Mediates the NAD(+) import into chloroplast. Favors the NAD(+)(in)/ADP or AMP(out) antiport exchange, but is also able to catalyze a low unidirectional transport (uniport) of NAD(+). Transports NAD(+), nicotinic acid adenine dinucleotide, nicotinamide mononucleotide, nicotinic acid mononucleotide, FAD, FMN, TTP, TDP, TMP, UTP, UDP, UMP, CTP, CDP, CMP, GTP, GDP, GMP, 3'-AMP, ATP, ADP, AND AMP, has low transport activity with cAMP, NADH and alpha-NAD(+), and has no activity with NADP(+), NADPH, nicotinamide, nicotinic acid, adenosine, thiamine mono- or diphosphate, inorganic phosphate, CoA, folate, NaCl, malate, malonate, citrate, fumarate, aspartate, glutamate, S-adenosylmethionine, lysine, arginine, and ornithine. {ECO:0000269|PubMed:16055441, ECO:0000269|PubMed:19745225}. MISCELLANEOUS: Appears to be a mitochondrial envelope-located membrane protein lacking an N-terminal-located transit peptide. 39496 Nicotinamide adenine dinucleotide transporter 2, mitochondrial (AtNDT2) (NAD(+) transporter 2) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; antiporter activity [GO:0015297]; NAD transporter activity [GO:0051724]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839]; NAD transmembrane transport [GO:0035352]; NAD transport [GO:0043132] TISSUE SPECIFICITY: Highly expressed in young meristematic shoot area, vascular bundles of leaves, developing siliques including the funiculi, petal veins, developing pollen and central cylinder of roots. {ECO:0000269|PubMed:19745225}. locus:2031240; AT1G25380 mitochondrial substrate carrier family protein Os01g0513200 protein A0A0P0V3K9 A0A0P0V3K9_ORYSJ Os01g0513200 OSNPB_010513200 ENOG411E06T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0202900 protein (Putative Avr9/Cf-9 rapidly elicited protein) (cDNA clone:002-137-F09, full insert sequence) Q69SQ5 Q69SQ5_ORYSJ Os06g0202900 Os06g0202900 OSJNBa0016O19.26 OSNPB_060202900 ENOG411E06W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os05g0114700 protein C7J250 C7J250_ORYSJ Os05g0114700 Os05g0114700 OSNPB_050114700 ENOG411E06V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Polygalacturonase inhibitor 1 (Floral organ regulator 1) (Polygalacturonase-inhibiting protein 1) (PGIP-1) Q8GT95 PGIP1_ORYSJ FOR1 Os07g0568700 LOC_Os07g38130 OJ1019_E02.4 OsJ_24796 DISRUPTION PHENOTYPE: Increase numbers of floral organs, including the stamen, carpel, palea/lemma, stigma and lodicule. {ECO:0000269|PubMed:14750524}. FUNCTION: Inhibitor of fungal polygalacturonase. Regulates floral organ number. {ECO:0000269|PubMed:14750524}. ENOG411E06Q ABCG2,ABCG16,ABCG1,ABCG6,ABCG20 Q9ZUT0,Q9M2V7,O80946,Q9FNB5,Q9LFG8 AB2G_ARATH,AB16G_ARATH,AB1G_ARATH,AB6G_ARATH,AB20G_ARATH ABC transporter G family member 2 (ABC transporter ABCG.2) (AtABCG2) (White-brown complex homolog protein 2) (AtWBC2),ABC transporter G family member 16 (ABC transporter ABCG.16) (AtABCG16) (Probable white-brown complex homolog protein 16) (AtWBC16),ABC transporter G family member 1 (ABC transporter ABCG.1) (AtABCG1) (White-brown complex homolog protein 1) (AtWBC1),ABC transporter G family member 6 (ABC transporter ABCG.6) (AtABCG6) (White-brown complex homolog protein 6) (AtWBC6),ABC transporter G family member 20 (ABC transporter ABCG.20) (AtABCG20) (Probable white-brown complex homolog protein 20) (AtWBC20) R-ATH-1369062; 83456,81704,82331,80301,82089 ABC transporter G family member 2 (ABC transporter ABCG.2) (AtABCG2) (White-brown complex homolog protein 2) (AtWBC2),ABC transporter G family member 16 (ABC transporter ABCG.16) (AtABCG16) (Probable white-brown complex homolog protein 16) (AtWBC16),ABC transporter G family member 1 (ABC transporter ABCG.1) (AtABCG1) (White-brown complex homolog protein 1) (AtWBC1),ABC transporter G family member 6 (ABC transporter ABCG.6) (AtABCG6) (White-brown complex homolog protein 6) (AtWBC6),ABC transporter G family member 20 (ABC transporter ABCG.20) (AtABCG20) (Probable white-brown complex homolog protein 20) (AtWBC20) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; suberin biosynthetic process [GO:0010345],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; pollen wall assembly [GO:0010208],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; pollen wall assembly [GO:0010208]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; response to nematode [GO:0009624]; suberin biosynthetic process [GO:0010345] locus:2049806;,locus:2097258;,locus:2039682;,locus:2173184;,locus:2083946; AT2G37360,AT3G55090,AT2G39350,AT5G13580,AT3G53510 ABC-2 type transporter ABC transporter G family member 5 (ABC transporter ABCG.5) (OsABCG5) (Protein REDUCED CULM NUMBER 1) (White-brown complex homolog protein 5) (OsWBC5),Os01g0836600 protein (Putative ATP-binding cassette transporter ABCG2) Q8H8V7,Q8S1S3 AB5G_ORYSJ,Q8S1S3_ORYSJ RCN1 WBC5 LOC_Os03g17350 Os03g0281900 OsJ_10379,Os01g0836600 Os01g0836600 OsJ_03996 OSNPB_010836600 P0506B12.28 FUNCTION: Essential transporter for growth and development under abiotic stress (PubMed:22996334). Mediates shoot branching by promoting the outgrowth of lateral shoots (PubMed:19140940). Required for salt tolerance via Na/K homeostasis, at least partly by regulating SKC1/OsHKT1;5 (PubMed:24908511). Necessary for hypodermal suberization of roots, which contributes to formation of the apoplastic barrier (PubMed:25041515). {ECO:0000269|PubMed:19140940, ECO:0000269|PubMed:24908511, ECO:0000269|PubMed:25041515, ECO:0000305|PubMed:22996334}. ENOG411E06P LD Q38796 LUMI_ARATH Homeobox protein LUMINIDEPENDENS DISRUPTION PHENOTYPE: Plants show late flowering phenotype (mutants LD-1 and LD-3). {ECO:0000269|PubMed:7907507}. Delay in flowering intermediate between that observed in the two parental single mutants. Late flowering-R. Amasino-1994 FUNCTION: Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. 105415 Homeobox protein LUMINIDEPENDENS nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems. TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds. locus:2005532; AT4G02560 homeobox protein Os01g0934300 protein (Fragment),Os01g0934300 protein A0A0P0VCL5,A0A0P0VCG7,A0A0P0VCJ2,A0A0P0VCJ3 A0A0P0VCL5_ORYSJ,A0A0P0VCG7_ORYSJ,A0A0P0VCJ2_ORYSJ,A0A0P0VCJ3_ORYSJ Os01g0934300 OSNPB_010934300 ENOG411E06S AUG3 Q0WQE7,A0A1P8BBQ1 AUG3_ARATH,A0A1P8BBQ1_ARATH AUGMIN subunit 3,HAUS augmin-like complex subunit DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:21750235}. FUNCTION: Involved in microtubules reorganization during spindle and phragmoplast development. Required for gamma-tubulin localization during mitosis. {ECO:0000269|PubMed:21750235}. 69725,69796 AUGMIN subunit 3,HAUS augmin-like complex subunit HAUS complex [GO:0070652]; microtubule [GO:0005874]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; cell division [GO:0051301]; phragmoplast microtubule organization [GO:0080175]; spindle assembly [GO:0051225],HAUS complex [GO:0070652]; spindle assembly [GO:0051225] locus:2166071; AT5G48520 Inherit from euNOG: HAUS augmin-like complex subunit 3 Os06g0186500 protein A0A0P0WTB6 A0A0P0WTB6_ORYSJ Os06g0186500 OSNPB_060186500 ENOG411E06R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E06Y O80512 O80512_ARATH Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (Uncharacterized protein At2g44730) 40782 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (Uncharacterized protein At2g44730) sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; glucosinolate metabolic process [GO:0019760]; regulation of transcription, DNA-templated [GO:0006355] locus:2042401; AT2G44730 Transcription factor Expressed protein (Os10g0564200 protein) Q7XC32 Q7XC32_ORYSJ LOC_Os10g41460 Os10g0564200 OSJNBa0027P10.21 OSNPB_100564200 ENOG411E06X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Leucine Rich Repeat family protein, expressed (Os03g0756200 protein) (Putative receptor-like protein kinase (Having alternative splicing)) Q75J19 Q75J19_ORYSJ OSJNBb0081K01.8 LOC_Os03g54900 Os03g0756200 OSNPB_030756200 ENOG411E06Z CNGC4 Q94AS9,F4K0A1 CNGC4_ARATH,F4K0A1_ARATH Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide- and calmodulin-regulated ion channel 4) (AtHLM1),Cyclic nucleotide-gated cation channel 4 DISRUPTION PHENOTYPE: Loss-of-function mutation results in the loss of the hypersensitive response leading to broad spectrum disease resistance, and displays a lesion-mimic phenotype. {ECO:0000269|PubMed:12566578}. Small leaves; Short petioles; Necrotic lesions; Resistant to Pseudomonas syringae-D. Roby-2003 FUNCTION: Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and sodium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Might constitute a common downstream component of the signaling pathways leading to hypersensitive response (HR). {ECO:0000269|PubMed:12566578}. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 80081,79497 Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide- and calmodulin-regulated ion channel 4) (AtHLM1),Cyclic nucleotide-gated cation channel 4 integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cation transmembrane transporter activity [GO:0008324]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; plant-type hypersensitive response [GO:0009626]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] locus:2162605; AT5G54250 cyclic nucleotide-gated ion channel Os05g0502000 protein (Putative cyclic nucleotide gated ion channel),Os01g0782800 protein Q60EI8,A0A0P0V919 Q60EI8_ORYSJ,A0A0P0V919_ORYSJ Os05g0502000 OSJNBa0017K09.10 OSNPB_050502000,Os01g0782800 OSNPB_010782800 ENOG411DUN4 MND1,ATMND1 Q8GYD2,A0A1P8B8S8 MND1_ARATH,A0A1P8B8S8_ARATH Meiotic nuclear division protein 1 homolog (AtMND1) (Meiotic nuclear division 1-like protein),Mnd1 family protein DISRUPTION PHENOTYPE: Female and male sterility due to production of defective gametes. {ECO:0000269|PubMed:16763194, ECO:0000269|PubMed:16872528}. Mutant plants had normal vegetative development but flowers failed to produce pollen and seeds; no viable pollen was found in the anthers. In developing pollen mother cells meiotic progression was interrupted at anaphase I where chromosomes are randomly distributed and some appear fragmented. Normal embryo sac development was disrupted too compared to the wild type. AtRAD51 gene was accumulated in the inflorescence nuclei of homozygous plants while it was absent in the inflorescence nuclei in wild type plants. After exposure to gamma-rays the levels of AtRAD51 was unchanged in the inflorescence nuclei in mutant plants while in the wild type nuclei AtRAD51 expression was strongly induced. Compared to the wild type mutant seedlings were hypersensitive to gamma-irradiation had shorter roots and fewer leaves.,Compared to the wild type mutant seedlings were hypersensitive to gamma-irradiation. Completely sterile due to defects in meiosis-P. Schlogelhofer-2006 FUNCTION: Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Stimulates both DMC1/LIM15- and RAD51-mediated homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks. {ECO:0000269|PubMed:16763194, ECO:0000269|PubMed:16872528, ECO:0000269|PubMed:17937504}. 26403,17750 Meiotic nuclear division protein 1 homolog (AtMND1) (Meiotic nuclear division 1-like protein),Mnd1 family protein nucleolus [GO:0005730]; nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; double-strand break repair [GO:0006302]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; reciprocal meiotic recombination [GO:0007131]; response to ionizing radiation [GO:0010212] TISSUE SPECIFICITY: Expressed in reproductive tissues. {ECO:0000269|PubMed:16872528}. locus:2119881; AT4G29170 meiotic nuclear division protein Meiotic nuclear division protein 1 homolog Q6H432 Q6H432_ORYSJ Os09g0280600 Os09g0280600 OsJ_28662 OSNPB_090280600 P0651G05.20 FUNCTION: Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. {ECO:0000256|PIRNR:PIRNR026991}. ENOG411E6WG Q8S8P4 Q8S8P4_ARATH Expressed protein (Uncharacterized protein At2g38465) 9383 Expressed protein (Uncharacterized protein At2g38465) plasma membrane [GO:0005886] locus:505006306; AT2G38465 NA Os06g0651200 protein Q67UQ1 Q67UQ1_ORYSJ Os06g0651200 Os06g0651200 OsJ_22183 OSNPB_060651200 P0453H04.37 ENOG411E8NX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Responsible for the transport of sucrose into the cell with the concomitant uptake of protons (symport system). May also transport other glucosides (By similarity) Sucrose transport protein SUT4 (Sucrose permease 4) (Sucrose transporter 4) (OsSUT4) (Sucrose-proton symporter 4),Os02g0827200 protein Q6YK44,A0A0N7KGD4 SUT4_ORYSJ,A0A0N7KGD4_ORYSJ SUT4 SUT2 Os02g0827200 LOC_Os02g58080 OsJ_08963,Os02g0827200 OSNPB_020827200 FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides (By similarity). {ECO:0000250}. ENOG411EDRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF227 NA NA NA NA NA NA NA ENOG411EDRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prephenate dehydrogenase NA NA NA NA NA NA NA ENOG411EDRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EDRC GH9B16 Q9SVJ4 GUN22_ARATH Endoglucanase 22 (EC 3.2.1.4) (Endo-1,4-beta glucanase 22) (Glycosyl hydrolase 9B16) 3.2.1.4 55019 Endoglucanase 22 (EC 3.2.1.4) (Endo-1,4-beta glucanase 22) (Glycosyl hydrolase 9B16) extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245] AT4G38990 Glycosyl hydrolase family 9 NA NA NA NA NA NA NA ENOG411EBME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EDRS B9DG15,Q5PP57,O80533,F4I101 B9DG15_ARATH,Q5PP57_ARATH,O80533_ARATH,F4I101_ARATH AT1G09500 protein (NAD(P)-binding Rossmann-fold superfamily protein),At1g09510 (NAD(P)-binding Rossmann-fold superfamily protein),At1g09500/F14J9_16 (F14J9.16 protein) (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT1G09510-MONOMER;,ARA:AT1G09500-MONOMER; 30534,35314,35773,32214 AT1G09500 protein (NAD(P)-binding Rossmann-fold superfamily protein),At1g09510 (NAD(P)-binding Rossmann-fold superfamily protein),At1g09500/F14J9_16 (F14J9.16 protein) (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein catalytic activity [GO:0003824]; coenzyme binding [GO:0050662],alcohol dehydrogenase (NAD) activity [GO:0004022]; coenzyme binding [GO:0050662] locus:2012315;,locus:2012280; AT1G09500,AT1G09510 NmrA-like family NA NA NA NA NA NA NA ENOG411EBMN Q9SUR5 Q9SUR5_ARATH At4g23610/F9D16_80 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein AT4g23610) (Uncharacterized protein F9D16.80) 25789 At4g23610/F9D16_80 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein AT4g23610) (Uncharacterized protein F9D16.80) integral component of membrane [GO:0016021] locus:2128464; AT4G23610 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EDR4 ATL81 Q9LQM2 ATL81_ARATH RING-H2 finger protein ATL81 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL81) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 38390 RING-H2 finger protein ATL81 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL81) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:4515102621; AT1G32361 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EDR0 CYP81F4 Q9SZU1 C81F4_ARATH Cytochrome P450 81F4 (EC 1.14.-.-) FUNCTION: Involved in indole glucosinolate biosynthesis. Catalyzes hydroxylation reactions of the glucosinolate indole ring. Converts indol-3-yl-methylglucosinolate (I3M) to 1-hydroxy-indol-3-yl-methylglucosinolate (1OH-I3M) intermediate. This hydroxy intermediates is converted to 1-methoxy-indol-3-yl-methylglucosinolate (1MO-I3M) by indole glucosinolate methyltransferase 1 and 2 (IGMT1 and IGMT2). {ECO:0000269|PubMed:21317374}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:AT4G37410-MONOMER; 1.14.-.- 57169 Cytochrome P450 81F4 (EC 1.14.-.-) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550] locus:2126382; AT4G37410 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411EDR8 ADF2 Q39251,C0Z352,A0A1I9LRV3 ADF2_ARATH,C0Z352_ARATH,A0A1I9LRV3_ARATH Actin-depolymerizing factor 2 (ADF-2) (AtADF2),AT3G46000 protein (Actin depolymerizing factor 2),Actin depolymerizing factor 2 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (PubMed:15563618, PubMed:19794115). Required for normal cell growth, plant development, cell organ expansion and flowering. Essential for root-knot nematode infection (PubMed:19794115). {ECO:0000269|PubMed:15563618, ECO:0000269|PubMed:19794115}. MISCELLANEOUS: Plants silencing ADF2 show net stabilization of F-actin that blocks cell maturation and root-knot nematode development and reproduction. {ECO:0000269|PubMed:19794115}. 15745,15142,17943 Actin-depolymerizing factor 2 (ADF-2) (AtADF2),AT3G46000 protein (Actin depolymerizing factor 2),Actin depolymerizing factor 2 actin cytoskeleton [GO:0015629]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042]; defense response [GO:0006952],actin cytoskeleton [GO:0015629]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042] locus:2077107; AT3G46000 ADF NA NA NA NA NA NA NA ENOG411E80X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0534200 protein (cDNA, clone: J100077M13, full insert sequence),CLE family OsCLE602 protein (Os06g0533700 protein) Q5Z5G7,A8R3R0 Q5Z5G7_ORYSJ,A8R3R0_ORYSJ Os06g0534200 OsJ_21568 OSJNBa0001B21.4 OSNPB_060534200 P0506C10.29,OsCLE602 Os06g0533700 OSNPB_060533700 ENOG411E80U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) Non-specific lipid-transfer protein A0A0P0WT47 A0A0P0WT47_ORYSJ Os06g0157900 OSNPB_060157900 FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. {ECO:0000256|RuleBase:RU000628}. ENOG411E80R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0478000 protein (Fragment) A0A0P0XH52 A0A0P0XH52_ORYSJ Os08g0478000 OSNPB_080478000 ENOG411E80N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: rna polymerase RNA-dependent RNA polymerase (EC 2.7.7.48) (Fragment) Q0JPV9 Q0JPV9_ORYSJ Os01g0198100 Os01g0198100 OSNPB_010198100 FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000256|RuleBase:RU363098}. ENOG411E80H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E80E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E80D dl3915c O23426,F4JHP1,F4I3J8,F4I3J6,F4I3J7 O23426_ARATH,F4JHP1_ARATH,F4I3J8_ARATH,F4I3J6_ARATH,F4I3J7_ARATH AT4g15750/dl3915c (IB1P8-4 protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein AT4g15750) (Uncharacterized protein dl3915c),Plant invertase/pectin methylesterase inhibitor superfamily protein 19266,19032,15520,25859,18816 AT4g15750/dl3915c (IB1P8-4 protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein AT4g15750) (Uncharacterized protein dl3915c),Plant invertase/pectin methylesterase inhibitor superfamily protein enzyme inhibitor activity [GO:0004857]; pectinesterase inhibitor activity [GO:0046910],enzyme inhibitor activity [GO:0004857],pectinesterase inhibitor activity [GO:0046910] locus:2130684;,locus:5019474799;,locus:2205220; AT4G15750,AT4G00872,AT1G56100 Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E7E3 Q8S8R9 Q8S8R9_ARATH At2g34585 (Expressed protein) (Transmembrane protein) (Uncharacterized protein At2g34580) 8571 At2g34585 (Expressed protein) (Transmembrane protein) (Uncharacterized protein At2g34580) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773] locus:505006290; AT2G34585 NA Os07g0154300 protein (cDNA clone:J033124K14, full insert sequence) Q69NX3 Q69NX3_ORYSJ Os07g0154300 Os07g0154300 OsJ_23133 OSJNBb0050B07.23 OSNPB_070154300 ENOG411E7E2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7E7 EPFL5,EPFL4 Q9LUH9,Q2V3I3 EPFL5_ARATH,EPFL4_ARATH EPIDERMAL PATTERNING FACTOR-like protein 5 (EPF-like protein 5) [Cleaved into: CHALLAH-LIKE1],EPIDERMAL PATTERNING FACTOR-like protein 4 (EPF-like protein 4) [Cleaved into: CHALLAH-LIKE2] DISRUPTION PHENOTYPE: No visible phenotype. Chal and cll2 double mutants are defective in growth, with a short stature, shortened pedicells and compact inflorescence. {ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22474391}. FUNCTION: Controls stomatal patterning. Mediates differentiation of stomatal lineage cells to pavement cells and stomatal development inhibition (PubMed:23748792). TMM (AC Q9SSD1) functions to dampen or block CLL1 signaling. Acts as growth-regulatory ligand for ERECTA family receptors. Promotes fruit growth and fertility (PubMed:22474391). {ECO:0000269|PubMed:19435754, ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22474391, ECO:0000269|PubMed:23748792}.,FUNCTION: Acts primarily as positive regulator of inflorescence growth. Endodermal expression is sufficient for proper inflorescence architecture (PubMed:22474391). Redundantly involved with EPFL6 in procambial development regulation. Controls stomatal patterning. Mediates stomatal development inhibition. TMM (AC Q9SSD1) functions to dampen or block CLL2 signaling. Acts as growth-regulatory ligand for ERECTA family receptors. {ECO:0000269|PubMed:19435754, ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22474391, ECO:0000269|PubMed:23881395}. 11505,12057 EPIDERMAL PATTERNING FACTOR-like protein 5 (EPF-like protein 5) [Cleaved into: CHALLAH-LIKE1],EPIDERMAL PATTERNING FACTOR-like protein 4 (EPF-like protein 4) [Cleaved into: CHALLAH-LIKE2] extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; stomatal complex development [GO:0010374] TISSUE SPECIFICITY: Expressed asymetically in the hypocotyl, on the side proximal to the folded cotyledons at germination. Detected in developing flowers, the chalazal region of ovules and near the root apex, but not in inflorescence stems. Expressed in cotyledons, flowers, adult leaves and fruits (PubMed:23748792). {ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22474391, ECO:0000269|PubMed:23748792}.,TISSUE SPECIFICITY: Expressed at the base of the apical meristem at 3 days after germination. Not detected in the hypocotyl. Expressed in developing stems soon after bolting, in inflorescence stems and in young siliques. {ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22474391}. locus:2094424;,locus:1009023326; AT3G22820,AT4G14723 epidermal patterning factor-like protein Allergen, putative, expressed (Os03g0161600 protein) (cDNA clone:002-133-B06, full insert sequence),Os04g0255450 protein Q10RE6,A0A0P0W847 Q10RE6_ORYSJ,A0A0P0W847_ORYSJ Os03g0161600 LOC_Os03g06610 Os03g0161600 OSNPB_030161600,Os04g0255450 OSNPB_040255450 ENOG411E7E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: syndrome nuclear autoantigen 1 NA NA NA NA NA NA NA ENOG411E7EJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0669475 protein A0A0P0WG54 A0A0P0WG54_ORYSJ Os04g0669475 OSNPB_040669475 ENOG411E7EN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase rRNA N-glycosidase (EC 3.2.2.22),Os11g0164000 protein A0A0P0XZ50,A0A0P0XZI9 A0A0P0XZ50_ORYSJ,A0A0P0XZI9_ORYSJ Os11g0164200 OSNPB_110164200,Os11g0164000 OSNPB_110164000 ENOG411E7EM Q8LEW6 Q8LEW6_ARATH At5g01075 (Glycosyl hydrolase family 35 protein) 8597 At5g01075 (Glycosyl hydrolase family 35 protein) endomembrane system [GO:0012505]; hydrolase activity [GO:0016787]; protein storage vacuole organization [GO:1990019] locus:505006577; AT5G01075 NA NA NA NA NA NA NA NA ENOG411E7EG F4JDF9 F4JDF9_ARATH Uncharacterized protein 8804 Uncharacterized protein AT3G13677 NA Os03g0581650 protein A0A0P0VZN2 A0A0P0VZN2_ORYSJ Os03g0581650 OSNPB_030581650 ENOG411EKIW SAT3,SAT1 Q39218,Q42588 SAT3_ARATH,SAT1_ARATH Serine acetyltransferase 3, mitochondrial (AtSAT-3) (AtSERAT2;2) (SAT-m) (EC 2.3.1.30),Serine acetyltransferase 1, chloroplastic (AtSAT-1) (EC 2.3.1.30) (AtSERAT2;1) (SAT-p) FUNCTION: May be involved in detoxification process by mediating the production of glutathione. PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 1/2. ARA:AT3G13110-MONOMER;MetaCyc:AT3G13110-MONOMER;,ARA:AT1G55920-MONOMER;MetaCyc:AT1G55920-MONOMER; 2.3.1.30; 2.3.1.30 42721,34251 Serine acetyltransferase 3, mitochondrial (AtSAT-3) (AtSERAT2;2) (SAT-m) (EC 2.3.1.30),Serine acetyltransferase 1, chloroplastic (AtSAT-1) (EC 2.3.1.30) (AtSERAT2;1) (SAT-p) cytosol [GO:0005829]; mitochondrion [GO:0005739]; serine O-acetyltransferase activity [GO:0009001]; zinc ion binding [GO:0008270]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535]; response to cadmium ion [GO:0046686],chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; serine O-acetyltransferase activity [GO:0009001]; cellular response to sulfate starvation [GO:0009970]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535]; response to cold [GO:0009409] TISSUE SPECIFICITY: Ubiquitous with higher levels in leaves and siliques. Localized in vascular tissues, particularly in phloem. {ECO:0000269|PubMed:12650624, ECO:0000269|PubMed:15579666, ECO:0000269|PubMed:7821427}.,TISSUE SPECIFICITY: Mostly expressed in leaves. Localized in cortex, trichomes and vascular tissues, particularly in phloem. {ECO:0000269|PubMed:10995473, ECO:0000269|PubMed:12650624, ECO:0000269|PubMed:15579666, ECO:0000269|PubMed:8867790}. locus:2089974;,locus:2012085; AT3G13110,AT1G55920 serine acetyltransferase NA NA NA NA NA NA NA ENOG411EF01 SPH2 F4JLQ5 SPH2_ARATH S-protein homolog 2 18810 S-protein homolog 2 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:504955438; AT4G16195 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EF00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Erg28 like protein NA NA NA NA NA NA NA ENOG411EF03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF05 CML9 Q9S744 CML9_ARATH Calmodulin-like protein 9 (AtCaM-9) FUNCTION: Potential calcium sensor. {ECO:0000269|PubMed:11855649}. 17036 Calmodulin-like protein 9 (AtCaM-9) cytosol [GO:0005829]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722]; detection of calcium ion [GO:0005513]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:11855649}. locus:2083700; AT3G51920 Pfam:efhand NA NA NA NA NA NA NA ENOG411EF09 Q58FU2,F4J7B4 Q58FU2_ARATH,F4J7B4_ARATH Cystatin/monellin superfamily protein,Cystatin-like protein 27879,48902 Cystatin/monellin superfamily protein,Cystatin-like protein locus:2148211;,locus:2079752; AT5G17100,AT3G05450 NA NA NA NA NA NA NA NA ENOG411EF0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: sphingosine kinase NA NA NA NA NA NA NA ENOG411EF0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EF0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CH NA NA NA NA NA NA NA ENOG411EF0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Orf152b protein Q8HCP4 Q8HCP4_ORYSJ orf152b ENOG411EF0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EF0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-protein homologue NA NA NA NA NA NA NA ENOG411EKIM Q9MAG2 Q9MAG2_ARATH F12M16.29 (Ubiquitin domain-containing protein) (Uncharacterized protein At1g53400) 12706 F12M16.29 (Ubiquitin domain-containing protein) (Uncharacterized protein At1g53400) ubiquitin binding [GO:0043130] locus:2009685; AT1G53400 NA NA NA NA NA NA NA NA ENOG411EI77 Q9T0D7,Q84J62 Y4170_ARATH,Y2920_ARATH UPF0725 protein At4g11700,UPF0725 protein At2g19200 20688,19158 UPF0725 protein At4g11700,UPF0725 protein At2g19200 locus:2139747; AT4G11700,AT2G19200 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EI76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0573900 protein (Fragment) A0A0P0X7T7 A0A0P0X7T7_ORYSJ Os07g0573900 OSNPB_070573900 ENOG411EI75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Erythrocyte membrane protein 1-like (Os06g0706700 protein) Q5Z8T9 Q5Z8T9_ORYSJ Os06g0706700 Os06g0706700 OsJ_22600 OSNPB_060706700 P0018H04.32 P0621D05.20 ENOG411EI74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0562650 protein (Fragment),Os02g0669366 protein (Fragment) A0A0N7KJI2,A0A0P0VN47 A0A0N7KJI2_ORYSJ,A0A0P0VN47_ORYSJ Os04g0562650 OSNPB_040562650,Os02g0669366 OSNPB_020669366 ENOG411EI73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EI72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0666000 protein A0A0P0WFZ7 A0A0P0WFZ7_ORYSJ Os04g0666000 OSNPB_040666000 ENOG411EI71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI78 Q9SR10,A8MQJ2 Q9SR10_ARATH,A8MQJ2_ARATH At3g04640 (F7O18.12 protein) (Glycine-rich protein),Glycine-rich protein 15888,12630 At3g04640 (F7O18.12 protein) (Glycine-rich protein),Glycine-rich protein anchored component of membrane [GO:0031225] locus:2084893; AT3G04640 NA NA NA NA NA NA NA NA ENOG411EI7G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EI7F O65514 O65514_ARATH Putative glycine-rich cell wall protein (Transmembrane protein) 20343 Putative glycine-rich cell wall protein (Transmembrane protein) apoplast [GO:0048046]; integral component of membrane [GO:0016021] locus:2122204; AT4G36230 NA NA NA NA NA NA NA NA ENOG411EI7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0720450 protein (Fragment),Os01g0608200 protein (Fragment),Os06g0306201 protein (Fragment),Os06g0122001 protein (Fragment) A0A0P0VNS3,A0A0P0V534,A0A0P0WW27,A0A0P0WS76 A0A0P0VNS3_ORYSJ,A0A0P0V534_ORYSJ,A0A0P0WW27_ORYSJ,A0A0P0WS76_ORYSJ Os02g0720450 OSNPB_020720450,Os01g0608200 OSNPB_010608200,Os06g0306201 OSNPB_060306201,Os06g0122001 OSNPB_060122001 ENOG411EI7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0511100 protein (Fragment) A0A0N7KNI5 A0A0N7KNI5_ORYSJ Os07g0511100 OSNPB_070511100 ENOG411EI7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7A Q8GW60 Q8GW60_ARATH At3g13845 (Transmembrane protein) (Uncharacterized protein At3g13845/MCP4.7) 6678 At3g13845 (Transmembrane protein) (Uncharacterized protein At3g13845/MCP4.7) integral component of membrane [GO:0016021] locus:505006343; AT3G13845 NA NA NA NA NA NA NA NA ENOG411EI7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0661250 protein (Fragment),Os03g0780550 protein (Fragment) A0A0P0W0Z3,A0A0P0W3T6 A0A0P0W0Z3_ORYSJ,A0A0P0W3T6_ORYSJ Os03g0661250 OSNPB_030661250,Os03g0780550 OSNPB_030780550 ENOG411EI7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) Os02g0776200 protein,Os02g0776000 protein Q6YZ67,Q6YZ56 Q6YZ67_ORYSJ,Q6YZ56_ORYSJ Os02g0776200 OJ1448_G06.42 OsJ_08578 OSJNBb0013K01.23 OSNPB_020776200,Os02g0776000 OJ1448_G06.40 OsJ_08577 OSJNBb0013K01.21 OSNPB_020776000 ENOG411EI7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411EI7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytosulfokine precursor protein (PSK) NA NA NA NA NA NA NA ENOG411EI7V Q84K44,Q9SUH0 Q84K44_ARATH,Q9SUH0_ARATH Putative endonuclease or glycosyl hydrolase (Uncharacterized protein At4g30760),Putative endonuclease or glycosyl hydrolase (Uncharacterized protein AT4g30760) (Uncharacterized protein T10C21.110) 21531,21460 Putative endonuclease or glycosyl hydrolase (Uncharacterized protein At4g30760),Putative endonuclease or glycosyl hydrolase (Uncharacterized protein AT4g30760) (Uncharacterized protein T10C21.110) peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468] locus:2131914; AT4G30760 NA NA NA NA NA NA NA NA ENOG411EI7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0157701 protein A0A0P0XZ20 A0A0P0XZ20_ORYSJ Os11g0157701 OSNPB_110157701 ENOG411EI7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EI7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411E8FY petG P56775 PETG_ARATH Cytochrome b6-f complex subunit 5 (Cytochrome b6-f complex subunit PetG) (Cytochrome b6-f complex subunit V) FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex. {ECO:0000255|HAMAP-Rule:MF_00432}. 4204 Cytochrome b6-f complex subunit 5 (Cytochrome b6-f complex subunit PetG) (Cytochrome b6-f complex subunit V) chloroplast thylakoid membrane [GO:0009535]; cytochrome b6f complex [GO:0009512]; integral component of membrane [GO:0016021]; oxidation-reduction process [GO:0055114]; photosynthesis [GO:0015979] locus:504954683; ATCG00600 Component of the cytochrome b6-f complex which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) cyclic electron flow around PSI and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex (By similarity) Cytochrome b6-f complex subunit 5 (Cytochrome b6-f complex subunit PetG) (Cytochrome b6-f complex subunit V) P0C392 PETG_ORYSJ petG petE LOC_Osp1g00540 Nip082 FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex. {ECO:0000255|HAMAP-Rule:MF_00432}. ENOG411E8FX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8FZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome c oxidase subunit Vb NA NA NA NA NA NA NA ENOG411E8FU MXK3.11 Q9LV89 Q9LV89_ARATH Transmembrane protein (Uncharacterized protein At5g64880) 18778 Transmembrane protein (Uncharacterized protein At5g64880) integral component of membrane [GO:0016021] locus:2177634; AT5G64880 NA NA NA NA NA NA NA NA ENOG411E8FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os02g0566300 protein (cDNA clone:J033072H18, full insert sequence),Os02g0272800 protein (cDNA clone:002-181-G01, full insert sequence),Os02g0566300 protein,Os12g0142900 protein (Fragment),Os02g0522100 protein (Fragment),Os04g0682600 protein (Fragment),Os08g0273000 protein (Fragment),Os08g0202300 protein (Fragment),Os12g0517800 protein,Os06g0170800 protein (Fragment) B7EMV3,Q0E246,A0A0P0VKJ5,A0A0N7KTK3,A0A0P0VJN6,A0A0P0WGF1,A0A0P0XDX2,A0A0N7KPF4,A0A0P0YAP6,A0A0N7KLL8 B7EMV3_ORYSJ,Q0E246_ORYSJ,A0A0P0VKJ5_ORYSJ,A0A0N7KTK3_ORYSJ,A0A0P0VJN6_ORYSJ,A0A0P0WGF1_ORYSJ,A0A0P0XDX2_ORYSJ,A0A0N7KPF4_ORYSJ,A0A0P0YAP6_ORYSJ,A0A0N7KLL8_ORYSJ Os02g0566300 OSNPB_020566300,Os02g0272800 Os02g0272800 OSNPB_020272800,Os12g0142900 OSNPB_120142900,Os02g0522100 OSNPB_020522100,Os04g0682600 OSNPB_040682600,Os08g0273000 OSNPB_080273000,Os08g0202300 OSNPB_080202300,Os12g0517800 OSNPB_120517800,Os06g0170800 OSNPB_060170800 ENOG411E8FW Q8L951 Q8L951_ARATH At1g69050 10229 At1g69050 locus:2033268; AT1G69050 NA NA NA NA NA NA NA NA ENOG411E8FV Q8L9T9 Q8L9T9_ARATH At5g66985 9389 At5g66985 locus:505006720; AT5G66985 NA NA NA NA NA NA NA NA ENOG411E8FQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E8FP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0359900 protein Q0J668 Q0J668_ORYSJ Os08g0359900 Os08g0359900 OSNPB_080359900 ENOG411E8FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8FR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0145100 protein (cDNA clone:002-135-C05, full insert sequence) Q6AUI0 Q6AUI0_ORYSJ Os05g0145100 Os05g0145100 OSJNBb0015A05.4 OSNPB_050145100 ENOG411E8FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TNP1/EN/SPM transposase Os03g0714800 protein A0A0P0W258 A0A0P0W258_ORYSJ Os03g0714800 OSNPB_030714800 ENOG411E8FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0372900 protein (cDNA clone:J033112H01, full insert sequence),Os05g0119200 protein (cDNA clone:J013122C02, full insert sequence) Q6ZD18,Q0DL77 Q6ZD18_ORYSJ,Q0DL77_ORYSJ Os08g0372900 Os08g0372900 OsJ_27101 OSNPB_080372900 P0690C12.12,Os05g0119200 Os05g0119200 OsJ_16915 OSNPB_050119200 ENOG411E8FI Q0WRF0 Q0WRF0_ARATH Transmembrane protein 5251 Transmembrane protein integral component of membrane [GO:0016021] locus:4515103274; AT3G57062 NA NA NA NA NA NA NA NA ENOG411E8FH F4I232,A0A1P8APA7 F4I232_ARATH,A0A1P8APA7_ARATH Glycosyltransferase (O-glucosyltransferase-like protein (DUF821)),O-glucosyltransferase-like protein (DUF821) 67059,54995 Glycosyltransferase (O-glucosyltransferase-like protein (DUF821)),O-glucosyltransferase-like protein (DUF821) endomembrane system [GO:0012505]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2031274; AT1G63420 CAP10 NA NA NA NA NA NA NA ENOG411E8FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0605400 protein (cDNA clone:J013161J19, full insert sequence) (cDNA clone:J033119N22, full insert sequence),Os07g0605350 protein,Os07g0605900 protein Q6Z4F5,Q6Z4F7,A0A0P0X8R5 Q6Z4F5_ORYSJ,Q6Z4F7_ORYSJ,A0A0P0X8R5_ORYSJ Os07g0605400 OSJNBb0040H10.32 OSNPB_070605400,OSJNBb0040H10.30 Os07g0605350 OSNPB_070605350,Os07g0605900 OSNPB_070605900 ENOG411E8FJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411E8FE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial domain of unknown function (DUF1713) NA NA NA NA NA NA NA ENOG411E8FD psbI P62100 PSBI_ARATH Photosystem II reaction center protein I (PSII-I) (PSII 4.8 kDa protein) FUNCTION: One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_01316}. MetaCyc:ATCG00080-MONOMER; 4168 Photosystem II reaction center protein I (PSII-I) (PSII 4.8 kDa protein) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; photosynthesis [GO:0015979] locus:504954632; ATCG00080 This protein is a component of the reaction center of photosystem II (By similarity) Photosystem II reaction center protein I (PSII-I) (PSII 4.8 kDa protein) P0C407 PSBI_ORYSJ psbI Nip012 FUNCTION: One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_01316}. ENOG411E8FG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0350100 protein A0A0P0V280 A0A0P0V280_ORYSJ Os01g0350100 OSNPB_010350100 ENOG411E8FA Q6DSU2 Q6DSU2_ARATH Transmembrane protein 10722 Transmembrane protein integral component of membrane [GO:0016021] locus:1006230677; AT1G06475 NA Os01g0750900 protein Q0JJA7 Q0JJA7_ORYSJ Os01g0750900 Os01g0750900 OSNPB_010750900 ENOG411E8FC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase NA NA NA NA NA NA NA ENOG411E8FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411E8F9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8F8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0048E02.16 protein (Os04g0466000 protein) Q7FAQ4 Q7FAQ4_ORYSJ Os04g0466000 OsJ_15107 OSJNBb0048E02.16 OSNPB_040466000 ENOG411E8F5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SpoU rRNA Methylase family NA NA NA NA NA NA NA ENOG411E8F4 Q940U2 Q940U2_ARATH AT5g05220/K18I23_2 20732 AT5g05220/K18I23_2 chloroplast [GO:0009507] locus:2153479; AT5G05220 NA Os03g0334300 protein A0A0P0VXV5 A0A0P0VXV5_ORYSJ Os03g0334300 OSNPB_030334300 ENOG411E8F7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0681800 protein (cDNA clone:J013075M10, full insert sequence),Os01g0681700 protein Q5QLG6,Q0JKD2 Q5QLG6_ORYSJ,Q0JKD2_ORYSJ Os01g0681800 Os01g0681800 OsJ_03024 OSNPB_010681800 P0019E03.27,Os01g0681700 Os01g0681700 OSNPB_010681700 ENOG411E8F6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0157200 protein,Os01g0156500 protein,Os03g0373100 protein,Os01g0157001 protein,Os01g0156900 protein Q5ZCD1,Q5ZCD3,B9F8N0,A0A0P0UYH0,A0A0P0UYK1 Q5ZCD1_ORYSJ,Q5ZCD3_ORYSJ,B9F8N0_ORYSJ,A0A0P0UYH0_ORYSJ,A0A0P0UYK1_ORYSJ Os01g0157200 Os01g0157200 OSNPB_010157200 P0011G08.36,P0011G08.29 Os01g0156500 OSNPB_010156500,Os03g0373100 OsJ_11016 OSNPB_030373100,Os01g0157001 OSNPB_010157001,Os01g0156900 OSNPB_010156900 ENOG411E8F1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8F0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubredoxin NA NA NA NA NA NA NA ENOG411E8F3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: intraflagellar transport 81 homolog (Chlamydomonas) NA NA NA NA NA NA NA ENOG411E8F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6G2 TEN1 Q6NME7 TEN1_ARATH CST complex subunit TEN1 (Protein MERISTEM DISORGANIZATION 1) (Protein telomeric pathways with STN1 homolog) FUNCTION: Required for the maintenance of meristems and stem cells through the reduction of DNA damage (PubMed:21781195). Promotes telomere integrity by maintaining telomere length and proper architecture of the chromosome terminus (PubMed:23572541). Negatively regulates telomerase repeat addition processivity (PubMed:23572541). Hampers contacts between enzymatically active telomerase and CST complex (PubMed:25329641). {ECO:0000269|PubMed:21781195, ECO:0000269|PubMed:23572541, ECO:0000269|PubMed:25329641}. 14378 CST complex subunit TEN1 (Protein MERISTEM DISORGANIZATION 1) (Protein telomeric pathways with STN1 homolog) chromosome, telomeric region [GO:0000781]; CST complex [GO:1990879]; protein binding involved in protein folding [GO:0044183]; single-stranded DNA binding [GO:0003697]; telomerase inhibitor activity [GO:0010521]; response to heat [GO:0009408]; shoot system development [GO:0048367]; stem cell population maintenance [GO:0019827]; telomere maintenance [GO:0000723] TISSUE SPECIFICITY: Ubiquitous (PubMed:21781195, PubMed:23572541). High expression in meristematic tissues and in vasculature (PubMed:21781195). {ECO:0000269|PubMed:21781195, ECO:0000269|PubMed:23572541}. locus:2011781; AT1G56260 NA NA NA NA NA NA NA NA ENOG411EGFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E3T0 Q9C589,A0A1P8BHB6 Q9C589_ARATH,A0A1P8BHB6_ARATH At5g21280 (Hydroxyproline-rich glycoprotein family protein) (Proline-rich protein family) (Uncharacterized protein At5g21280),Hydroxyproline-rich glycoprotein family protein 33629,31949 At5g21280 (Hydroxyproline-rich glycoprotein family protein) (Proline-rich protein family) (Uncharacterized protein At5g21280),Hydroxyproline-rich glycoprotein family protein locus:504956442; AT5G21280 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411E3T1 Q93ZZ7 Q93ZZ7_ARATH Acid phosphatase/vanadium-dependent haloperoxidase-related protein (Uncharacterized protein At3g12685) 22876 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (Uncharacterized protein At3g12685) peroxidase activity [GO:0004601] locus:505006336; AT3G12685 Divergent PAP2 family Os06g0530300 protein (Fragment) A0A0N7KM78 A0A0N7KM78_ORYSJ Os06g0530300 OSNPB_060530300 ENOG411E3T2 TT2 Q9FJA2,A0A1P8BFG0 TT2_ARATH,A0A1P8BFG0_ARATH Transcription factor TT2 (Myb-related protein 123) (AtMYB123) (Myb-related transcription factor LBM2-like) (Protein TRANSPARENT TESTA 2),Duplicated homeodomain-like superfamily protein Yellow seed coat-L. Lepiniec-2001 FUNCTION: Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. MISCELLANEOUS: TT2 activity is tightly linked to the presence of TT8. 29611,29591 Transcription factor TT2 (Myb-related protein 123) (AtMYB123) (Myb-related transcription factor LBM2-like) (Protein TRANSPARENT TESTA 2),Duplicated homeodomain-like superfamily protein nucleus [GO:0005634]; ATP binding [GO:0005524]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; fatty acid biosynthetic process [GO:0006633]; flavonoid biosynthetic process [GO:0009813]; proanthocyanidin biosynthetic process [GO:0010023]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to osmotic stress [GO:0006970]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. locus:2169538; AT5G35550 myb-like DNA-binding domain containing protein NA NA NA NA NA NA NA ENOG411E3T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Os10g0481000 protein A0A0P0XVF5 A0A0P0XVF5_ORYSJ Os10g0481000 OSNPB_100481000 ENOG411E3T4 Q8LGE7,Q9SQT4,B3H556 NDA8B_ARATH,NDA8A_ARATH,B3H556_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A,Cox19-like CHCH family protein FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. 11968,12160,8986 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A,Cox19-like CHCH family protein mitochondrial intermembrane space [GO:0005758]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; oxidation-reduction process [GO:0055114],mitochondrial intermembrane space [GO:0005758]; mitochondrial respiratory chain complex I [GO:0005747]; plastid [GO:0009536]; oxidation-reduction process [GO:0055114] locus:2144935;,locus:2081096; AT5G18800,AT3G06310 NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit CHCH domain containing protein, expressed (Os03g0295500 protein) (cDNA, clone: J065024G23, full insert sequence) Q10MU1 Q10MU1_ORYSJ Os03g0295500 LOC_Os03g18420 Os03g0295500 OsJ_10476 OSNPB_030295500 ENOG411E3T5 ERF017,ERF018 Q84QC2,Q9S7L5 ERF17_ARATH,ERF18_ARATH Ethylene-responsive transcription factor ERF017,Ethylene-responsive transcription factor ERF018 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 20727,21898 Ethylene-responsive transcription factor ERF017,Ethylene-responsive transcription factor ERF018 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell division [GO:0051301]; defense response to insect [GO:0002213]; ethylene-activated signaling pathway [GO:0009873]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944] locus:2202200;,locus:2027171; AT1G19210,AT1G74930 Transcription factor AP2 domain transcription factor-like (Os06g0197200 protein) (Os06g0197600 protein) Q69Y93 Q69Y93_ORYSJ Os06g0197600 Os06g0197200 B1172G12.5 OSNPB_060197200 OSNPB_060197600 P0528E04.39 P0528E04.44 ENOG411E3T6 F4JC50 F4JC50_ARATH Chaperone DnaJ-domain superfamily protein 26714 Chaperone DnaJ-domain superfamily protein locus:4010713734; AT3G06778 Heat Shock Protein DnaJ domain containing protein, expressed (DnaJ-like protein) (Os03g0831000 protein) (Putative heat shock protein) Q850Z3 Q850Z3_ORYSJ OSJNBb0027B08.12 Os03g0831000 LOC_Os03g61550 OSJNBa0078D06.16 OSNPB_030831000 ENOG411E3T7 Q6NLT8,A8MQR7 Q6NLT8_ARATH,A8MQR7_ARATH At1g53530 (Peptidase S24/S26A/S26B/S26C family protein) (Uncharacterized protein At1g53530),Peptidase S24/S26A/S26B/S26C family protein 18782,13002 At1g53530 (Peptidase S24/S26A/S26B/S26C family protein) (Uncharacterized protein At1g53530),Peptidase S24/S26A/S26B/S26C family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane peptidase complex [GO:0042720]; serine-type peptidase activity [GO:0008236]; mitochondrial respiratory chain complex assembly [GO:0033108]; protein processing involved in protein targeting to mitochondrion [GO:0006627]; signal peptide processing [GO:0006465],integral component of membrane [GO:0016021]; serine-type peptidase activity [GO:0008236] locus:2203688; AT1G53530 Mitochondrial inner membrane protease subunit Os11g0620000 protein (Signal peptidase I family protein, expressed) (cDNA clone:002-114-A11, full insert sequence) Q0IRL1 Q0IRL1_ORYSJ Os11g0620000 LOC_Os11g40500 Os11g0620000 OSNPB_110620000 ENOG411E3T8 RPL35AD,RPL35AB P51422,Q9FZH0 R35A4_ARATH,R35A2_ARATH 60S ribosomal protein L35a-4,60S ribosomal protein L35a-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 12785,12799 60S ribosomal protein L35a-4,60S ribosomal protein L35a-2 cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal large subunit biogenesis [GO:0042273],cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal large subunit biogenesis [GO:0042273] locus:2078991;,locus:2033548; AT3G55750,AT1G41880 60S ribosomal protein Os05g0556900 protein (Putative ribosomal protein L35A) (cDNA clone:001-019-B02, full insert sequence) (cDNA clone:J033107H21, full insert sequence),Os05g0555800 protein (Fragment),Os05g0556900 protein (Fragment) Q6I608,A0A0P0WQT3,A0A0P0WQR3 Q6I608_ORYSJ,A0A0P0WQT3_ORYSJ,A0A0P0WQR3_ORYSJ Os05g0556900 OJ1214_E03.11 OJ1214_E03.3 OsJ_19494 OSNPB_050556900,Os05g0555800 OSNPB_050555800,Os05g0556900 OSNPB_050556900 ENOG411E3T9 Q9FTA3,A0A1P8BE85 Q9FTA3_ARATH,A0A1P8BE85_ARATH At5g08320 (E2F-associated phosphoprotein) (Uncharacterized protein F8L15_50),E2F-associated phosphoprotein 17056,12152 At5g08320 (E2F-associated phosphoprotein) (Uncharacterized protein F8L15_50),E2F-associated phosphoprotein nucleus [GO:0005634]; positive regulation of cell proliferation [GO:0008284]; regulation of transcription elongation from RNA polymerase II promoter [GO:0034243] locus:2150793; AT5G08320 E2F-associated phosphoprotein Os02g0635700 protein Q0DZA4 Q0DZA4_ORYSJ Os02g0635700 Os02g0635700 OsJ_07644 OSNPB_020635700 ENOG411E3TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411E3TQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0500300 protein Q654M7 Q654M7_ORYSJ Os06g0500300 Os06g0500300 OSNPB_060500300 P0012H03.8 P0596H06.28 ENOG411E3TR F3C22_110 Q9LXJ3,Q9SJN3 Q9LXJ3_ARATH,Q9SJN3_ARATH Uncharacterized protein At3g52710 (Uncharacterized protein F3C22_110),At2g36220/F2H17.17 (Expressed protein) 31694,29036 Uncharacterized protein At3g52710 (Uncharacterized protein F3C22_110),At2g36220/F2H17.17 (Expressed protein) plasma membrane [GO:0005886],anaerobic respiration [GO:0009061] locus:2083203;,locus:2049480; AT3G52710,AT2G36220 NA NA NA NA NA NA NA NA ENOG411E3TS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA enzyme of the cupin superfamily protein Os02g0620400 protein (cDNA clone:001-005-A12, full insert sequence) Q6K9G4 Q6K9G4_ORYSJ Os02g0620400 OJ1372_D06.24 OsJ_07560 OSNPB_020620400 ENOG411E3TT HAC1 Q8RUD6 HARC1_ARATH Protein HIGH ARSENIC CONTENT 1, mitochondrial (AtHAC1) (Arsenate reductase) (EC 1.20.4.1) (Arsenate tolerance QTL1) (AtATQ1) (Rhodanese-like domain-containing protein 19) (Sulfurtransferase 19) (AtStr19) DISRUPTION PHENOTYPE: Reduced arsenate resistance and increased accumulation of arsenic in shoots and roots. {ECO:0000269|PubMed:25464340}. FUNCTION: Arsenate reductase critical for arsenic tolerance (PubMed:25099865). Reduces arsenate to arsenite in the root, facilitating efflux of arsenic back into the soil to limit both its accumulation in the root and transport to the shoot (PubMed:25464340). Essential for arsenite efflux from the root, but not necessary for arsenate uptake (PubMed:25464340). {ECO:0000269|PubMed:25099865, ECO:0000269|PubMed:25464340}. 1.20.4.1 19039 Protein HIGH ARSENIC CONTENT 1, mitochondrial (AtHAC1) (Arsenate reductase) (EC 1.20.4.1) (Arsenate tolerance QTL1) (AtATQ1) (Rhodanese-like domain-containing protein 19) (Sulfurtransferase 19) (AtStr19) mitochondrion [GO:0005739]; arsenate reductase (glutaredoxin) activity [GO:0008794]; arsenate reductase activity [GO:0030611]; detoxification of arsenic-containing substance [GO:0071722] TISSUE SPECIFICITY: Expressed in root hairs, epidermal cells at the surface of the root and in the pericycle within the stele. {ECO:0000269|PubMed:25464340}. locus:505006261; AT2G21045 Rhodanese-like domain NA NA NA NA NA NA NA ENOG411E3TU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3TV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Os01g0174000 protein A0A0P0UYZ1 A0A0P0UYZ1_ORYSJ Os01g0174000 OSNPB_010174000 ENOG411E3TW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os01g0652700 protein Q8RUR8 Q8RUR8_ORYSJ Os01g0652700 OsJ_02846 OSJNBb0006H05.1 OSJNBb0032K15.20 OSNPB_010652700 ENOG411E3TX Q6RF46 Q6RF46_ARATH Methionine-S-oxide reductase 14367 Methionine-S-oxide reductase plasma membrane [GO:0005886] locus:504955974; AT2G17705 NA Expressed protein (Os03g0136500 protein) Q10S38 Q10S38_ORYSJ Os03g0136500 LOC_Os03g04370 OSNPB_030136500 ENOG411E3TY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA myb-related protein Myb4-like NA NA NA NA NA NA NA ENOG411E3TZ Q9FH78 Q9FH78_ARATH Late embryogenesis abundant protein 22168 Late embryogenesis abundant protein integral component of membrane [GO:0016021] locus:2158465; AT5G45320 NA Os06g0710400 protein (Os06g0710500 protein) (cDNA clone:001-102-F09, full insert sequence) Q5Z9G5 Q5Z9G5_ORYSJ Os06g0710500 Os06g0710400 OSNPB_060710500 P0655A07.24 ENOG411E3TA Q8LAF9,A0A1R7T3A2 Q8LAF9_ARATH,A0A1R7T3A2_ARATH At5g20130 (Sulfate adenylyltransferase subunit) (Uncharacterized protein At5g20130),Sulfate adenylyltransferase subunit 21948,25444 At5g20130 (Sulfate adenylyltransferase subunit) (Uncharacterized protein At5g20130),Sulfate adenylyltransferase subunit nucleotidyltransferase activity [GO:0016779] locus:2149229; AT5G20130 NA Os09g0568100 protein A0A0P0XR11 A0A0P0XR11_ORYSJ Os09g0568100 OSNPB_090568100 ENOG411E3TB Q9SK36 Q9SK36_ARATH At2g24970 (Expressed protein) (Spindle/kinetochore-associated protein) 17228 At2g24970 (Expressed protein) (Spindle/kinetochore-associated protein) condensed chromosome outer kinetochore [GO:0000940]; spindle microtubule [GO:0005876]; microtubule binding [GO:0008017]; cell division [GO:0051301]; chromosome segregation [GO:0007059] locus:2047359; AT2G24970 NA Os01g0766400 protein (cDNA clone:J033042A17, full insert sequence) Q8LIY5 Q8LIY5_ORYSJ Os01g0766400 OSJNBb0053G03.5 OSNPB_010766400 ENOG411E3TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: alginate regulatory protein AlgP Os02g0797600 protein (cDNA clone:001-034-F05, full insert sequence) (cDNA clone:006-301-E07, full insert sequence) (cDNA clone:J013155B15, full insert sequence) Q6KAJ1 Q6KAJ1_ORYSJ Os02g0797600 Os02g0797600 OJ1004_E04.38 OSNPB_020797600 ENOG411E3TD AIP3 Q9M4B5 PFD4_ARATH Probable prefoldin subunit 4 (ABI3-interacting protein 3) FUNCTION: Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). {ECO:0000250}. 14881 Probable prefoldin subunit 4 (ABI3-interacting protein 3) cytosol [GO:0005829]; prefoldin complex [GO:0016272]; chaperone binding [GO:0051087]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2025655; AT1G08780 prefoldin subunit Prefoldin subunit 4 Q53K63 Q53K63_ORYSJ Os03g0628900 LOC_Os03g43020 Os03g0628900 OsJ_11811 OSNPB_030628900 FUNCTION: Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. {ECO:0000256|PIRNR:PIRNR016477}. ENOG411E3TE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0552800 protein (cDNA, clone: J100026I16, full insert sequence) B7FA06 B7FA06_ORYSJ Os05g0552800 OSNPB_050552800 ENOG411E3TF Q9T0A6,Q9SN57,F4JN75,F4JN76 Q9T0A6_ARATH,Q9SN57_ARATH,F4JN75_ARATH,F4JN76_ARATH At4g23910 (Uncharacterized protein AT4g23910),AT4G10970 protein (At4g10970) (Ribosome maturation factor) (Uncharacterized protein AT4g10970) (Uncharacterized protein F25I24.180),Ribosome maturation factor 22266,24508,24033,31974 At4g23910 (Uncharacterized protein AT4g23910),AT4G10970 protein (At4g10970) (Ribosome maturation factor) (Uncharacterized protein AT4g10970) (Uncharacterized protein F25I24.180),Ribosome maturation factor locus:2138111;,locus:2123471; AT4G23910,AT4G10970 NA Os08g0374200 protein (cDNA clone:002-119-C07, full insert sequence) (cDNA clone:J023081K18, full insert sequence),Os08g0374200 protein (Fragment) Q0J636,A0A0P0XFA2 Q0J636_ORYSJ,A0A0P0XFA2_ORYSJ Os08g0374200 Os08g0374200 OSNPB_080374200,Os08g0374200 OSNPB_080374200 ENOG411E3TG HIPP05,HIPP06 Q9SJL2,Q9LZF1,F4KFA7 HIP5_ARATH,HIP6_ARATH,F4KFA7_ARATH Heavy metal-associated isoprenylated plant protein 5 (AtHIP05) (Farnesylated protein 2) (AtFP2),Heavy metal-associated isoprenylated plant protein 6 (AtHIP06) (Cadmium induced protein CdI19),Heavy metal transport/detoxification superfamily protein DISRUPTION PHENOTYPE: Strongly increased bacterial disease susceptibility. {ECO:0000269|PubMed:12684538}. FUNCTION: Heavy-metal-binding protein (By similarity). Involved in disease resistance (PubMed:12684538). {ECO:0000250|UniProtKB:Q9LZF1, ECO:0000269|PubMed:12684538}.,FUNCTION: Heavy-metal-binding protein. Involved in the maintenance of heavy metal homeostasis and/or in detoxification. {ECO:0000269|PubMed:12383082}. 40357,42263,39421 Heavy metal-associated isoprenylated plant protein 5 (AtHIP05) (Farnesylated protein 2) (AtFP2),Heavy metal-associated isoprenylated plant protein 6 (AtHIP06) (Cadmium induced protein CdI19),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; copper ion binding [GO:0005507]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed in petioles, hypocotyls, peduncles, vascular bundles and root meristems. {ECO:0000269|PubMed:12383082}. locus:2057951;,locus:2142614; AT2G36950,AT5G03380 Heavy-metal-associated domain-containing protein NA NA NA NA NA NA NA ENOG411E3TH MJJ3.25 Q9FFJ5 Q9FFJ5_ARATH At5g05830 (Gb|AAD32776.1) (RING/FYVE/PHD zinc finger superfamily protein) (Uncharacterized protein At5g05830) 22369 At5g05830 (Gb|AAD32776.1) (RING/FYVE/PHD zinc finger superfamily protein) (Uncharacterized protein At5g05830) integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2166399; AT5G05830 RINGv Os01g0850200 protein (Zinc finger protein-like),Os04g0581502 protein (Fragment) Q8S283,A0A0N7KJK3 Q8S283_ORYSJ,A0A0N7KJK3_ORYSJ Os01g0850200 OSNPB_010850200 P0414E03.27 P0529H11.16,Os04g0581502 OSNPB_040581502 ENOG411E3TI Q6NLE7,A0A1P8B8V8,F4JRH5,F4JRH4 Q6NLE7_ARATH,A0A1P8B8V8_ARATH,F4JRH5_ARATH,F4JRH4_ARATH At4g12850 (Far-red impaired responsive (FAR1) family protein),Far-red impaired responsive (FAR1) family protein 15903,16261,21381,5623 At4g12850 (Far-red impaired responsive (FAR1) family protein),Far-red impaired responsive (FAR1) family protein regulation of transcription, DNA-templated [GO:0006355] locus:2135738; AT4G12850 protein FAR1-RELATED SEQUENCE NA NA NA NA NA NA NA ENOG411E3TJ Q9ZQ78 Q9ZQ78_ARATH Uncharacterized protein At2g03420 (Uncharacterized protein At2g03420/T4M8.15) 19028 Uncharacterized protein At2g03420 (Uncharacterized protein At2g03420/T4M8.15) locus:2063819; AT2G03420 NA Os03g0210700 protein A0A0P0VUL4 A0A0P0VUL4_ORYSJ Os03g0210700 OSNPB_030210700 ENOG411E3TM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E3TN MEBL Q8LPT3,A0A1P8B475 MEBL_ARATH,A0A1P8B475_ARATH Membrane protein of ER body-like protein,Vacuolar iron transporter (VIT) family protein FUNCTION: Not essential for the accumulation of ER body components, including PYK10. {ECO:0000269|PubMed:23166355}. 82551,84959 Membrane protein of ER body-like protein,Vacuolar iron transporter (VIT) family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; ER body [GO:0010168]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to iron ion [GO:0071281]; intracellular sequestering of iron ion [GO:0006880]; manganese ion transmembrane transport [GO:0071421],integral component of membrane [GO:0016021] locus:2137390; AT4G27870 VIT family Os06g0103800 protein (cDNA clone:J013123L02, full insert sequence) Q0DFB4 Q0DFB4_ORYSJ Os06g0103800 Os06g0103800 OSNPB_060103800 ENOG411EGF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6GT TCP1 Q9FYG7,F4HRT7 TCP1_ARATH,F4HRT7_ARATH Transcription factor TCP1,TCP family transcription factor FUNCTION: Involved in petal morphogenesis. {ECO:0000269|PubMed:17940055}. 40754,39797 Transcription factor TCP1,TCP family transcription factor nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}. TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}. locus:2019594; AT1G67260 transcription factor NA NA NA NA NA NA NA ENOG411EJW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: doublecortin domain containing 5 NA NA NA NA NA NA NA ENOG411EC7U Q8GY58 GUN23_ARATH Endoglucanase 23 (EC 3.2.1.4) (Endo-1,4-beta glucanase 23) ARA:AT4G39000-MONOMER; 3.2.1.4 54692 Endoglucanase 23 (EC 3.2.1.4) (Endo-1,4-beta glucanase 23) extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245] locus:2120232; AT4G39000 glycosyl hydrolase NA NA NA NA NA NA NA ENOG411EC7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0412100 protein (Putative disease resistance protein) (cDNA clone:J023132L07, full insert sequence),Os08g0411850 protein Q6Z569,A0A0P0XFX0 Q6Z569_ORYSJ,A0A0P0XFX0_ORYSJ Os08g0412100 OsJ_27288 OSJNBa0007M04.12 OSNPB_080412100,Os08g0411850 OSNPB_080411850 ENOG411EC7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411EC7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40S ribosomal protein S24 40S ribosomal protein S24 Q8W0C2 Q8W0C2_ORYSJ Os01g0723200 OSNPB_010723200 P0022F10.13 P0690B02.40 ENOG411EC7J F18L15.130 Q7FK55 Q7FK55_ARATH Protein kinase superfamily protein (Uncharacterized protein F18L15.130) 32704 Protein kinase superfamily protein (Uncharacterized protein F18L15.130) peroxisome [GO:0005777]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2078181; AT3G46410 STYKc NA NA NA NA NA NA NA ENOG411EC7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase S24-like Signal peptidase I (EC 3.4.21.89) (Fragment) A0A0P0VRL4 A0A0P0VRL4_ORYSJ Os02g0827900 OSNPB_020827900 ENOG411EC7E FAE1 Q38860 KCS18_ARATH 3-ketoacyl-CoA synthase 18 (KCS-18) (EC 2.3.1.199) (Protein FATTY ACID ELONGATION 1) (Very long-chain fatty acid condensing enzyme 18) (VLCFA condensing enzyme 18) DISRUPTION PHENOTYPE: Strong fatty acid chain length ratio (CLR) reduction. {ECO:0000269|PubMed:23145136}. Thin inflorescence stems; Sensitive to low humidity-J. Jaworski-1999 FUNCTION: Contributes to fatty acids elongation and stockage in developing seeds. Active on both saturated and mono-unsaturated acyl-CoAs of 16 and 18 carbons. Required for the elongation of C18 to C20 and of C20 to C22 fatty acids. Mediates also the synthesis of VLCFAs from 20 to 26 carbons in length (e.g. C20:1, C20, C22:1, C22, C24:1, C24, C26) (PubMed:15277688, PubMed:16765910, PubMed:7734965, PubMed:9263455, Ref.4, Ref.5, PubMed:12135493, PubMed:23145136). Has no activity with polyunsaturated C18:2 and C18:3 or with acyl-CoAs having 22 carbons or longer chain length (PubMed:12135493). {ECO:0000269|PubMed:12135493, ECO:0000269|PubMed:15277688, ECO:0000269|PubMed:16765910, ECO:0000269|PubMed:23145136, ECO:0000269|PubMed:7734965, ECO:0000269|PubMed:9263455, ECO:0000269|Ref.4, ECO:0000269|Ref.5}. MISCELLANEOUS: CLR.2, the major quantitative trait loci (QTL) involved in seed lipid metabolism is associated with the single point mutation L407V. {ECO:0000269|PubMed:23145136}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT4G34520-MONOMER;MetaCyc:AT4G34520-MONOMER; 2.3.1.199 56264 3-ketoacyl-CoA synthase 18 (KCS-18) (EC 2.3.1.199) (Protein FATTY ACID ELONGATION 1) (Very long-chain fatty acid condensing enzyme 18) (VLCFA condensing enzyme 18) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; organelle membrane [GO:0031090]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid elongase activity [GO:0009922]; fatty acid biosynthetic process [GO:0006633] DEVELOPMENTAL STAGE: Accumulates in upper part of roots, hypocotyls and cotyledons of developing embryo. Levels increase in early stages (torpedo, 4 days after flowering) and decrease during late stages of embryo development. {ECO:0000269|PubMed:11575726}. TISSUE SPECIFICITY: Expressed specifically in seeds, especially in embryos (PubMed:11575726, PubMed:7734965). Expressed in siliques (PubMed:18465198). {ECO:0000269|PubMed:11575726, ECO:0000269|PubMed:18465198, ECO:0000269|PubMed:7734965}. locus:2139599; AT4G34520 3-ketoacyl-CoA synthase NA NA NA NA NA NA NA ENOG411EC7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: FBOX NA NA NA NA NA NA NA ENOG411EE2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAE1 Q94K76 Q94K76_ARATH Curculin-like (Mannose-binding) lectin family protein (Uncharacterized protein At5g18470) 45808 Curculin-like (Mannose-binding) lectin family protein (Uncharacterized protein At5g18470) plant-type cell wall [GO:0009505]; carbohydrate binding [GO:0030246]; response to karrikin [GO:0080167] locus:2146263; AT5G18470 B_lectin NA NA NA NA NA NA NA ENOG411EAE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAE2 COBL10,COBL11 Q9LJU0,Q9T045 CBL10_ARATH,CBL11_ARATH COBRA-like protein 10,COBRA-like protein 11 74670,73849 COBRA-like protein 10,COBRA-like protein 11 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12376623}. locus:2085785;,locus:2136452; AT3G20580,AT4G27110 COBRA-like protein 11 precursor NA NA NA NA NA NA NA ENOG411EAE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0617700 protein),Os11g0171100 protein,Expressed protein (Os10g0450100 protein) Q2R153,Q53P80,Q7XDV9 Q2R153_ORYSJ,Q53P80_ORYSJ,Q7XDV9_ORYSJ Os11g0617700 LOC_Os11g40320 OsJ_34647 OSNPB_110617700,Os11g0171100 LOC_Os11g07000 OsJ_33120 OSNPB_110171100,Os10g0450100 LOC_Os10g31250 OSNPB_100450100 ENOG411EAE7 FUT8 Q9XI78 FUT8_ARATH Probable fucosyltransferase 8 (AtFUT8) (EC 2.4.1.-) FUNCTION: May be involved in cell wall biosynthesis. May act as a fucosyltransferase. PATHWAY: Protein modification; protein glycosylation. ARA:AT1G14100-MONOMER; 2.4.1.- 59286 Probable fucosyltransferase 8 (AtFUT8) (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Expressed in leaves and stems. {ECO:0000269|PubMed:11743104}. locus:2035812; AT1G14100 Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411E94B MAJ23.20 Q9FT66,F4KI88 Q9FT66_ARATH,F4KI88_ARATH At5g10660 (Calmodulin-binding protein-like protein) (Vacuolar calcium binding protein-like),Calmodulin-binding protein-like protein 44269,49775 At5g10660 (Calmodulin-binding protein-like protein) (Vacuolar calcium binding protein-like),Calmodulin-binding protein-like protein locus:2159639; AT5G10660 NA NA NA NA NA NA NA NA ENOG411E94C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0833000 protein,Os12g0221800 protein Q6K958,A0A0P0Y875 Q6K958_ORYSJ,A0A0P0Y875_ORYSJ Os02g0833000 OJ1149_C12.30 OJ1282_E10.6 OSNPB_020833000,Os12g0221800 OSNPB_120221800 ENOG411EAEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os07g0513400 protein (cDNA clone:002-103-C10, full insert sequence) Q0D638 Q0D638_ORYSJ Os07g0513400 Os07g0513400 OSNPB_070513400 ENOG411EAEE MQL5.20 Q84JI7,Q501G7,A0A1P8B5G6,A0A1P8B5F9,A0A1P8B5G7,F4JX42 Q84JI7_ARATH,Q501G7_ARATH,A0A1P8B5G6_ARATH,A0A1P8B5F9_ARATH,A0A1P8B5G7_ARATH,F4JX42_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g17480),Alpha/beta-Hydrolases superfamily protein (At4g17470),Alpha/beta-Hydrolases superfamily protein ARA:AT4G17480-MONOMER;,ARA:AT4G17470-MONOMER; R-ATH-75105; 33714,34189,27186,24513,27823,35181 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g17480),Alpha/beta-Hydrolases superfamily protein (At4g17470),Alpha/beta-Hydrolases superfamily protein intracellular membrane-bounded organelle [GO:0043231]; palmitoyl hydrolase activity [GO:0098599]; thiolester hydrolase activity [GO:0016790],palmitoyl hydrolase activity [GO:0098599] locus:2129076;,locus:2129066;,locus:2171564; AT4G17480,AT4G17470,AT5G47340 Palmitoyl protein thioesterase family NA NA NA NA NA NA NA ENOG411EAEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411EAEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EAEI VOZ2 Q9SLB9 VOZ2_ARATH Transcription factor VOZ2 (Protein VASCULAR PLANT ONE-ZINC FINGER 2) (AtVOZ2) DISRUPTION PHENOTYPE: No visible phenotype. Voz1 and voz2 double mutant displays a late flowering phenotype under long-day conditions. {ECO:0000269|PubMed:22904146}. FUNCTION: Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. 50566 Transcription factor VOZ2 (Protein VASCULAR PLANT ONE-ZINC FINGER 2) (AtVOZ2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; long-day photoperiodism, flowering [GO:0048574]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles and mesophyll cells of various tissues. Expressed in the root, especially in the root tip. Also detected in stamen filaments, stipules and anthers. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. locus:2053786; AT2G42400 vascular plant one zinc finger protein 2 NA NA NA NA NA NA NA ENOG411EAEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAEJ BHLH19 Q1PF16,A0A1P8AXG9 BH019_ARATH,A0A1P8AXG9_ARATH Transcription factor bHLH19 (Basic helix-loop-helix protein 19) (AtbHLH19) (bHLH 19) (Transcription factor EN 26) (bHLH transcription factor bHLH019),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 33787,32625 Transcription factor bHLH19 (Basic helix-loop-helix protein 19) (AtbHLH19) (bHLH 19) (Transcription factor EN 26) (bHLH transcription factor bHLH019),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}. locus:2062230; AT2G22760 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EAEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EAEQ PER1,PER2 P0DI10,Q67Z07 PER1_ARATH,PER2_ARATH Peroxidase 1 (EC 1.11.1.7) (ATP11a) (Atperox P1),Peroxidase 2 (EC 1.11.1.7) (ATP12a) (Atperox P2) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. 1.11.1.7 35624 Peroxidase 1 (EC 1.11.1.7) (ATP11a) (Atperox P1),Peroxidase 2 (EC 1.11.1.7) (ATP12a) (Atperox P2) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; lignin metabolic process [GO:0009808]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Slightly expressed in roots. locus:2817952;,locus:2207215; AT1G05240,AT1G05250 Peroxidase NA NA NA NA NA NA NA ENOG411EAEU RLP30,RLP31,RLP37,RLP38,RLP36 Q9MA83,Q8RX63,Q9LS80,Q9LS79,Q1PEN0,A0A1I9LPW6 RLP30_ARATH,Q8RX63_ARATH,Q9LS80_ARATH,Q9LS79_ARATH,Q1PEN0_ARATH,A0A1I9LPW6_ARATH Receptor like protein 30 (AtRLP30),At3g05370/T12H1_34 (Receptor like protein 31),Disease resistance protein (Receptor like protein 37),Disease resistance protein (Receptor like protein 38),Disease resistance family protein/LRR family protein (Receptor like protein 36),Receptor like protein 36 DISRUPTION PHENOTYPE: Reduced basal defense leading to an increased susceptibility to the non-host bacteria such as P.syringae pv phaseolicola (Psp 1448A) (PubMed:18434605). Increased susceptibility to S.sclerotiorum strain 1980 and to the related fungus B.cinerea. Impaired SCLEROTINIA CULTURE FILTRATE ELICITOR1- (SCFE1) and flg22-dependent ethylene production (PubMed:24104566). {ECO:0000269|PubMed:18434605, ECO:0000269|PubMed:24104566}. Embryo defective; Cotyledon-D. Meinke-2008 FUNCTION: Receptor for microbe-associated molecular patterns (MAMPs) that induces a BAK1-dependent basal immune response to necrotrophic fungi (e.g. S.sclerotiorum) in the presence of MAMPs (e.g. flg22 and SCLEROTINIA CULTURE FILTRATE ELICITOR1 (SCFE1) from the necrotrophic fungal pathogen S. sclerotiorum). Functionality seems to depend on the presence of the receptor kinase SOBIR1 as an adapter protein (PubMed:24104566). Required for full non-host resistance to bacterial pathogens (e.g. P.syringae pv phaseolicola) (PubMed:18434605). {ECO:0000269|PubMed:18434605, ECO:0000269|PubMed:24104566}. 87527,96868,93219,87229,65999,58045 Receptor like protein 30 (AtRLP30),At3g05370/T12H1_34 (Receptor like protein 31),Disease resistance protein (Receptor like protein 37),Disease resistance protein (Receptor like protein 38),Disease resistance family protein/LRR family protein (Receptor like protein 36),Receptor like protein 36 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to fungus [GO:0050832]; detection of molecule of fungal origin [GO:0032491]; response to fungus [GO:0009620]; response to molecule of bacterial origin [GO:0002237]; response to molecule of fungal origin [GO:0002238]; response to molecule of oomycetes origin [GO:0002240],integral component of membrane [GO:0016021] locus:2096339;,locus:2096349;,locus:2094603;,locus:2094613;,locus:2094563; AT3G05360,AT3G05370,AT3G23110,AT3G23120,AT3G23010 Receptor like protein NA NA NA NA NA NA NA ENOG411EAEZ Q6NMZ5 Q6NMZ5_ARATH At3g51410 31978 At3g51410 locus:2081815; AT3G51410 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E949 CAF1-10 Q9LEU4 CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 (EC 3.1.13.4) FUNCTION: Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity). {ECO:0000250}. 3.1.13.4 31533 Probable CCR4-associated factor 1 homolog 10 (EC 3.1.13.4) CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; negative regulation of translation [GO:0017148]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2183765; AT5G10960 CAF1 family ribonuclease NA NA NA NA NA NA NA ENOG411E941 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0009P12.16 protein (Os04g0591900 protein) Q5VSW0 Q5VSW0_ORYSJ Os04g0591900 OsJ_15980 OSJNBa0009P12.16 OSNPB_040591900 ENOG411DS3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 Formin-like protein 10 (OsFH10) Q6H7U3 FH10_ORYSJ FH10 Os02g0161100 LOC_Os02g06580 B1103G11.53 OJ9003_G05.18 OsJ_005312 ENOG411DS3P MLN1.18 Q9FFG7,Q8S8H8,A8MQK0 Q9FFG7_ARATH,Q8S8H8_ARATH,A8MQK0_ARATH At5g44250 (Similarity to unknown protein) (Uncharacterized protein At5g44250; MLN1.18),At2g15695 (Uncharacterized protein At2g15695),Uncharacterized protein 45439,46885,34219 At5g44250 (Similarity to unknown protein) (Uncharacterized protein At5g44250; MLN1.18),At2g15695 (Uncharacterized protein At2g15695),Uncharacterized protein peroxisome [GO:0005777] locus:2167613;,locus:505006247; AT5G44250,AT2G15695 Eukaryotic protein of unknown function (DUF829) Expressed protein (Os11g0614900 protein),Os06g0213400 protein (cDNA clone:J023092B08, full insert sequence) Q2R181,Q69YD2 Q2R181_ORYSJ,Q69YD2_ORYSJ Os11g0614900 LOC_Os11g40070 OSNPB_110614900,Os06g0213400 OSNPB_060213400 P0701E03.39 ENOG411DS3X BEH3,BEH4 O49404,Q9ZV88,A0A1P8B3N3 BEH3_ARATH,BEH4_ARATH,A0A1P8B3N3_ARATH BES1/BZR1 homolog protein 3,BES1/BZR1 homolog protein 4,BES1/BZR1 homolog 3 30908,34697,22126 BES1/BZR1 homolog protein 3,BES1/BZR1 homolog protein 4,BES1/BZR1 homolog 3 DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; transcription, DNA-templated [GO:0006351] locus:2117154;,locus:2037518; AT4G18890,AT1G78700 BES1 BZR1 homolog protein Protein BZR1 homolog 4 (OsBZR4) (Protein BRASSINAZOLE-RESISTANT 1 homolog 4),Protein BZR1 homolog 3 (OsBZR3) (Protein BRASSINAZOLE-RESISTANT 1 homolog 3),Protein BZR1 homolog 2 (OsBZR2) (Protein BRASSINAZOLE-RESISTANT 1 homolog 2) Q6EUF1,Q5Z9E5,Q0JPT4 BZR4_ORYSJ,BZR3_ORYSJ,BZR2_ORYSJ BZR4 Os02g0233200 LOC_Os02g13900 OJ1705_E12.36,BZR3 Os06g0552300 LOC_Os06g35900 P0427B07.9,BZR2 Os01g0203000 LOC_Os01g10610 P0489A05.32 FUNCTION: May function in brassinosteroid signaling. {ECO:0000250}. ENOG411E1FT MSJ1.7 F4KDK4 F4KDK4_ARATH 1,8-cineole synthase 42667 1,8-cineole synthase locus:2173383; AT5G64230 NA Os02g0754600 protein,Os03g0197600 protein,Os01g0731375 protein Q6Z696,A0A0P0VU77,A0A0P0V7V3 Q6Z696_ORYSJ,A0A0P0VU77_ORYSJ,A0A0P0V7V3_ORYSJ Os02g0754600 OsJ_08427 OSNPB_020754600 P0627E03.17,Os03g0197600 OSNPB_030197600,Os01g0731375 OSNPB_010731375 ENOG411DS3F Q9SHI9 Q9SHI9_ARATH At1g06440 (F12K11.21) (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At1g06440) 44692 At1g06440 (F12K11.21) (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At1g06440) hydrolase activity [GO:0016787] locus:2009230; AT1G06440 Plant organelle RNA recognition domain Membrane associated salt-inducible protein, putative (Os10g0510300 protein),Os04g0618900 protein Q94GX2,A0A0P0WES9 Q94GX2_ORYSJ,A0A0P0WES9_ORYSJ Os10g0510300 LOC_Os10g36680 Os10g0510300 OSJNBa0005K07.14 OSNPB_100510300,Os04g0618900 OSNPB_040618900 ENOG411DS3E OVA1 Q9M2T9,A8MRF2 SYMM_ARATH,A8MRF2_ARATH Methionine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.10) (Methionyl-tRNA synthetase) (AtcpMetRS) (MetRS) (Protein OVULE ABORTION 1),Methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (CpMetRS) DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterozygous plants 33% of ovules are aborted compared to 11% of ovules of wild type siblings. Ovule abortion; Male and female gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 ARA:AT3G55400-MONOMER; 6.1.1.10 69274,60324 Methionine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.10) (Methionyl-tRNA synthetase) (AtcpMetRS) (MetRS) (Protein OVULE ABORTION 1),Methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (CpMetRS) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; methionine-tRNA ligase activity [GO:0004825]; methionyl-tRNA aminoacylation [GO:0006431]; plant ovule development [GO:0048481],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; methionine-tRNA ligase activity [GO:0004825]; methionyl-tRNA aminoacylation [GO:0006431] locus:2099966; AT3G55400 Methionyl-tRNA Methionyl-tRNA synthetase, putative, expressed (Os03g0209600 protein) (cDNA clone:J013160O09, full insert sequence),Os03g0209600 protein (Fragment) Q10Q53,A0A0N7KGT3 Q10Q53_ORYSJ,A0A0N7KGT3_ORYSJ Os03g0209600 LOC_Os03g11120 Os03g0209600 OsJ_09866 OSNPB_030209600,Os03g0209600 OSNPB_030209600 ENOG411EJN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0888066 protein Q5N825 Q5N825_ORYSJ Os01g0888066 B1099D03.13 OSNPB_010888066 P0434C04.33 ENOG411EJN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EJNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3730) NA NA NA NA NA NA NA ENOG411DS3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class II (A) Os01g0120400 protein (cDNA clone:001-038-F08, full insert sequence) (cDNA clone:006-309-G11, full insert sequence) Q5ZDT9 Q5ZDT9_ORYSJ Os01g0120400 OSNPB_010120400 P0684C01.1 P0698A04.33 ENOG411E5UW Q9LNK0,Q9ZQC0 Q9LNK0_ARATH,Q9ZQC0_ARATH DNA-directed RNA polymerase subunit FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|PIRNR:PIRNR005586}. R-ATH-1834949; 12274,12253 DNA-directed RNA polymerase subunit DNA-directed RNA polymerase III complex [GO:0005666]; nucleolus [GO:0005730]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA cleavage [GO:0006379]; regulation of transcription, DNA-templated [GO:0006355]; termination of RNA polymerase III transcription [GO:0006386],cytoplasm [GO:0005737]; DNA-directed RNA polymerase III complex [GO:0005666]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA cleavage [GO:0006379]; regulation of transcription, DNA-templated [GO:0006355]; termination of RNA polymerase III transcription [GO:0006386] locus:2035322;,locus:2120527; AT1G01210,AT4G07950 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) DNA-directed RNA polymerase subunit Q6EU09 Q6EU09_ORYSJ Os02g0672700 OJ1197_E09.8 OJ1493_H11.21 OSNPB_020672700 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|PIRNR:PIRNR005586}. ENOG411E5UV Q8LBN7,A0A1P8B7K5 COSA_ARATH,A0A1P8B7K5_ARATH Costars family protein At4g33640,Costars family protein 10420,18337 Costars family protein At4g33640,Costars family protein locus:2134183; AT4G33640 costars family Costars family protein Q6AVK1 COSA_ORYSJ Os03g0690000 LOC_Os03g48390 OsJ_011680 OSJNBa0022C08.7 ENOG411E5UE Q9SJW1 Q9SJW1_ARATH Uncharacterized protein At2g01050 (Zinc ion binding / nucleic acid binding protein) 56343 Uncharacterized protein At2g01050 (Zinc ion binding / nucleic acid binding protein) locus:2045756; AT2G01050 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E5U4 NRPB10,NRPB10L Q8LFJ6,Q9SYA6 NRPBA_ARATH,RPBAL_ARATH DNA-directed RNA polymerases II, IV and V subunit 10 (DNA-directed RNA Polymerase II subunit L),DNA-directed RNA polymerase subunit 10-like protein (ABC10) (DNA-directed RNA polymerase III subunit L) (DNA-directed RNA polymerases I, II, and III subunit RPABC5) (RNA polymerases I, II, and III subunit ABC5) (RPB10 homolog) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 8315,8173 DNA-directed RNA polymerases II, IV and V subunit 10 (DNA-directed RNA Polymerase II subunit L),DNA-directed RNA polymerase subunit 10-like protein (ABC10) (DNA-directed RNA polymerase III subunit L) (DNA-directed RNA polymerases I, II, and III subunit RPABC5) (RNA polymerases I, II, and III subunit ABC5) (RPB10 homolog) DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; zinc ion binding [GO:0008270]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383],DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; zinc ion binding [GO:0008270]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383] locus:2823924;,locus:2195718; AT1G11475,AT1G61700 DNA-directed RNA polymerases I II and III subunit DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed (Dna-directed rna polymerase ii 8.2 kDa polypeptide (Ec 2.7.7.6)(Rpb10) (Rp10) (Abc10)) (Os11g0194800 protein) (cDNA clone:002-151-C09, full insert sequence),Os12g0180400 protein (Fragment) Q53LH8,A0A0P0Y7J1 Q53LH8_ORYSJ,A0A0P0Y7J1_ORYSJ Os11g0194800 LOC_Os11g08940 Os11g0194800 OSNPB_110194800,Os12g0180400 OSNPB_120180400 ENOG411E6SH PSAE1,PSAE2 Q9S831,Q9S714 PSAE1_ARATH,PSAE2_ARATH Photosystem I reaction center subunit IV A, chloroplastic (PSI-E A),Photosystem I reaction center subunit IV B, chloroplastic (PSI-E B) Pale green; Slow growth; Dwarf-D. Leister-2000 FUNCTION: Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase. {ECO:0000250}. MetaCyc:MONOMER-1096; 14967,15189 Photosystem I reaction center subunit IV A, chloroplastic (PSI-E A),Photosystem I reaction center subunit IV B, chloroplastic (PSI-E B) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; photosystem I reaction center [GO:0009538]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979]; response to cytokinin [GO:0009735],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; photosystem I reaction center [GO:0009538]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979]; response to cytokinin [GO:0009735] locus:2117818;,locus:2038942; AT4G28750,AT2G20260 photosystem I reaction center subunit IV Os07g0435300 protein (Fragment) A0A0P0X592 A0A0P0X592_ORYSJ Os07g0435300 OSNPB_070435300 ENOG411DSHY Q9SLN0,A0A1P8B2F2,F4IVY1 Q9SLN0_ARATH,A0A1P8B2F2_ARATH,F4IVY1_ARATH At2g39630/F12L6.29 (Glycosyltransferase) (Nucleotide-diphospho-sugar transferases superfamily protein) (Putative dolichyl-phosphate beta-glucosyltransferase),Nucleotide-diphospho-sugar transferases superfamily protein ARA:AT2G39630-MONOMER; R-ATH-480985; 38337,26106,26499 At2g39630/F12L6.29 (Glycosyltransferase) (Nucleotide-diphospho-sugar transferases superfamily protein) (Putative dolichyl-phosphate beta-glucosyltransferase),Nucleotide-diphospho-sugar transferases superfamily protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; transferase activity [GO:0016740]; protein N-linked glycosylation [GO:0006487],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2039707; AT2G39630 Dolichyl-phosphate Glycosyl transferase, group 2 family protein, expressed (Os03g0821800 protein) (cDNA clone:J033089K11, full insert sequence) Q10BK3 Q10BK3_ORYSJ Os03g0821800 LOC_Os03g60700 Os03g0821800 OsJ_13154 OSNPB_030821800 ENOG411DSHX ARF5,MP P93024,A0A1P8AQ60 ARFE_ARATH,A0A1P8AQ60_ARATH Auxin response factor 5 (Auxin-responsive protein IAA24) (Transcription factor MONOPTEROS),Auxin response factor Embryo and seedling defective-G. Jurgens-1998 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. MISCELLANEOUS: Absence of the protein probably causes early embryonic lethality. Premature stop codons are associated with vascular defects. 99650,98455 Auxin response factor 5 (Auxin-responsive protein IAA24) (Transcription factor MONOPTEROS),Auxin response factor membrane [GO:0016020]; nucleus [GO:0005634]; identical protein binding [GO:0042802]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; auxin-activated signaling pathway [GO:0009734]; embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; leaf vascular tissue pattern formation [GO:0010305]; longitudinal axis specification [GO:0009942]; meristem development [GO:0048507]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In early embryo and during organ development. TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. locus:2035454; AT1G19850 auxin response factor Auxin response factor 11 (OsARF5) (OsMP) (Protein MONOPTEROS-like),Auxin response factor,Auxin response factor (Fragment) Q8S983,A0A0N7KJV7,A0A0P0WG28 ARFK_ORYSJ,A0A0N7KJV7_ORYSJ,A0A0P0WG28_ORYSJ ARF11 ARF5 MP Os04g0664400 LOC_Os04g56850 OSJNBa0084K01.22,Os04g0664400 OSNPB_040664400 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. ENOG411DSHJ SOT15,SOT14 Q8L5A7,Q8GZ53 SOT15_ARATH,SOT14_ARATH Cytosolic sulfotransferase 15 (AtSOT15) (EC 2.8.2.-) (Sulfotransferase 2a) (AtST2a),Cytosolic sulfotransferase 14 (AtSOT14) (EC 2.8.2.-) (Sulfotransferase 2b) (AtST2b) FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of hydroxyjasmonates, with a preference for 12-hydroxyjasmonate over 11-hydroxyjasmonate. No activity with 12-hydroxyjasmonic acid methyl ester, cucurbic acid, 7-iso-cucurbic acid, 6-epi-cucurbic acid, 6-epi-7-iso-cucurbic acid and their methyl esters, prostaglandin E2, arachidonyl alcohol and 11-eicosenol. {ECO:0000269|PubMed:12637544}.,FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. Not active with 11-hydroxyjasmonate or 12-hydroxyjasmonate. {ECO:0000269|PubMed:12637544}. ARA:AT5G07010-MONOMER;,ARA:AT5G07000-MONOMER; R-ATH-156584; 2.8.2.- 41364,39653 Cytosolic sulfotransferase 15 (AtSOT15) (EC 2.8.2.-) (Sulfotransferase 2a) (AtST2a),Cytosolic sulfotransferase 14 (AtSOT14) (EC 2.8.2.-) (Sulfotransferase 2b) (AtST2b) cytoplasm [GO:0005737]; hydroxyjasmonate sulfotransferase activity [GO:0080131]; jasmonic acid metabolic process [GO:0009694]; response to jasmonic acid [GO:0009753],cytoplasm [GO:0005737]; sulfotransferase activity [GO:0008146] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:12637544}. locus:2169344;,locus:2169469; AT5G07010,AT5G07000 flavonol sulfotransferase-like NA NA NA NA NA NA NA ENOG411DS39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA epoxide hydrolase Epoxide hydrolase, putative, expressed (Os10g0498000 protein) (Putative epoxide hydrolase) (cDNA clone:J023096B06, full insert sequence) Q8W3F1 Q8W3F1_ORYSJ LOC_Os10g35490 Os10g0498000 OsJ_32040 OSJNBa0017E08.14 OSNPB_100498000 ENOG411DSHC Q9FL95,Q8H121,F4JU04,F4JU03 Q9FL95_ARATH,Q8H121_ARATH,F4JU04_ARATH,F4JU03_ARATH At5g45020/K21C13_21 (Glutathione S-transferase family protein),Glutathione S-transferase family protein (Uncharacterized protein At4g19880),Glutathione S-transferase family protein ARA:AT5G45020-MONOMER; 37343,40576,35570,43651 At5g45020/K21C13_21 (Glutathione S-transferase family protein),Glutathione S-transferase family protein (Uncharacterized protein At4g19880),Glutathione S-transferase family protein cytoplasm [GO:0005737]; glutathione transferase activity [GO:0004364],transferase activity [GO:0016740],cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; response to cadmium ion [GO:0046686] locus:2155397;,locus:2134005; AT5G45020,AT4G19880 Glutathione S-transferase C-terminal domain Os02g0319300 protein (Fragment) Q0E1P4 Q0E1P4_ORYSJ Os02g0319300 Os02g0319300 OSNPB_020319300 ENOG411DSHA DJ1C Q8VY09,A0A1P8B6E1 DJ1C_ARATH,A0A1P8B6E1_ARATH Protein DJ-1 homolog C (AtDJ1C),Class I glutamine amidotransferase-like superfamily protein DISRUPTION PHENOTYPE: Albino phenotype and seedling lethal when homozygous. The phenotype is due to the absence of thylakoid membranes and granal stacks in plastids. {ECO:0000269|PubMed:21886817}. FUNCTION: Plays an essential role in chloroplast development and is required for chloroplast integrity and viability. {ECO:0000269|PubMed:21886817}. MISCELLANEOUS: DJ1C lacks the catalytic cysteine residues in the endopeptidase domains which is a highly conserved feature of the family. However these residues are not essential for the function of DJ1C in chloroplast development (PubMed:21886817). {ECO:0000305|PubMed:21886817}. 50987,35097 Protein DJ-1 homolog C (AtDJ1C),Class I glutamine amidotransferase-like superfamily protein chloroplast [GO:0009507]; chloroplast organization [GO:0009658],integral component of membrane [GO:0016021]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541] TISSUE SPECIFICITY: Expressed in young leaves. {ECO:0000269|PubMed:21886817}. locus:2124246; AT4G34020 DJ-1/PfpI family Os05g0519600 protein (cDNA clone:J023077J08, full insert sequence),Os05g0519600 protein Q65X06,Q6F2Y9 Q65X06_ORYSJ,Q6F2Y9_ORYSJ Os05g0519600 Os05g0519600 OSNPB_050519600 P0599F04.12,Os05g0519600 OSNPB_050519600 P0483D07.2 P0599F04.12 ENOG411E0MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os01g0730100 protein (Putative ribosomal RNA apurinic site specific lyase) Q9AX10 Q9AX10_ORYSJ Os01g0730100 OSNPB_010730100 P0435H01.21 P0456A01.38 ENOG411DTB2 ABIL3,ABIL2 Q6NMC6,Q9M3A3,A0A1P8BBP1,A0A1P8BBP2,F4KFT1 ABIL3_ARATH,ABIL2_ARATH,A0A1P8BBP1_ARATH,A0A1P8BBP2_ARATH,F4KFT1_ARATH Protein ABIL3 (Abl interactor-like protein 3) (AtABIL3),Protein ABIL2 (Abl interactor-like protein 2) (AtABIL2),ABL interactor-like protein 3 Trichomes are irregularly expanded and distorted. Branch lengths are significantly affected with all three branches being significantly shorter than the respective branches of wild type trichomes. Increased distance between first and second branch point as compared to WT. Increased diameter at base of trichome. Actn filaments in developing trichomes are generally more bundled and more randomly distributed. Increased root length. Distorted trichomes-J. Uhrig-2010 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. 36681,35777,36148,35012,26824 Protein ABIL3 (Abl interactor-like protein 3) (AtABIL3),Protein ABIL2 (Abl interactor-like protein 2) (AtABIL2),ABL interactor-like protein 3 cytoplasm [GO:0005737]; microtubule cytoskeleton [GO:0015630]; root development [GO:0048364]; trichome morphogenesis [GO:0010090],cytoplasm [GO:0005737]; cytoskeleton [GO:0005856] locus:2169759;,locus:2082941; AT5G24310,AT3G49290 Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2 3 complex (By similarity) Putative protein ABIL2 (Abl interactor-like protein 2) Q5JKN2 ABIL2_ORYSJ Os01g0551800 LOC_Os01g37110 OSJNBa0066C06.14 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411DTB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA inulinase activity Beta-fructofuranosidase, insoluble isoenzyme 7 (EC 3.2.1.26) (Cell wall beta-fructosidase 7) (Invertase 7) (OsCIN7) (Sucrose hydrolase 7),Os09g0255266 protein (Os09g0255300 protein) Q0J360,C7J796 INV7_ORYSJ,C7J796_ORYSJ CIN7 INV1 Os09g0255000 LOC_Os09g08072 OSJNBb0066C12.30,Os09g0255266 Os09g0255300 OSNPB_090255300 FUNCTION: May play a role in sucrose partitioning during seed development. ENOG411DTB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF607 Expressed protein (Os03g0233000 protein) (cDNA clone:J023021I18, full insert sequence) Q8S5X6 Q8S5X6_ORYSJ OJ1175C11.12 LOC_Os03g13050 Os03g0233000 OsJ_10039 OSNPB_030233000 ENOG411DTBA AtMYB93 Q9S9Z2 Q9S9Z2_ARATH F21H2.9 protein (MYB transcription factor) (Myb domain protein 93) FUNCTION: Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. 41197 F21H2.9 protein (MYB transcription factor) (Myb domain protein 93) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cellular response to auxin stimulus [GO:0071365]; negative regulation of lateral root development [GO:1901332]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to salicylic acid [GO:0009751] locus:2023951; AT1G34670 transcription factor Os06g0221000 protein (Putative MYB family transcription factor),Myb-like DNA-binding domain containing protein, expressed (Os03g0388600 protein) (Putative Myb protein) (cDNA, clone: J100067L15, full insert sequence) Q67VZ4,Q75LP7 Q67VZ4_ORYSJ,Q75LP7_ORYSJ Os06g0221000 Os06g0221000 OSNPB_060221000 P0516A04.11,Os03g0388600 LOC_Os03g27090 OSJNBa0017N12.27 OSNPB_030388600 ENOG411DTBN RCE2,RCE1 Q9ZU75,Q9SDY5 UB12L_ARATH,RCE1_ARATH Probable NEDD8-conjugating enzyme Ubc12-like (EC 6.3.2.-) (RUB1 carrier protein 2) (RUB1-conjugating enzyme 2) (RUB1-protein ligase 2),NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1) (RUB1-protein ligase 1) FUNCTION: Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000305}.,FUNCTION: Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:10611386, ECO:0000269|PubMed:12682009}. MISCELLANEOUS: Reduction in RCE1 levels leads to reduced organ length and defects in gravitropism. PATHWAY: Protein modification; protein neddylation. R-ATH-8951664; 6.3.2.- 21133,20787 Probable NEDD8-conjugating enzyme Ubc12-like (EC 6.3.2.-) (RUB1 carrier protein 2) (RUB1-conjugating enzyme 2) (RUB1-protein ligase 2),NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1) (RUB1-protein ligase 1) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; NEDD8 transferase activity [GO:0019788]; protein neddylation [GO:0045116],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; NEDD8 transferase activity [GO:0019788]; protein neddylation [GO:0045116]; response to auxin [GO:0009733] TISSUE SPECIFICITY: Expressed in shoot, root and floral meristems, and in vascular tissues of leaves. {ECO:0000269|PubMed:12682009}. locus:2046303;,locus:2115305; AT2G18600,AT4G36800 NEDD8-conjugating enzyme Os09g0321900 protein (Putative RUB1 conjugating enzyme) (cDNA clone:J033069E18, full insert sequence),Os10g0190000 protein (Ubiquitin-conjugating enzyme E2 M, putative, expressed) (cDNA clone:J013000F24, full insert sequence),Os08g0374100 protein (Fragment),Os10g0190000 protein (Fragment) Q69NC4,Q33AD8,A0A0P0XFD2,A0A0P0XT60,A0A0P0XFY8 Q69NC4_ORYSJ,Q33AD8_ORYSJ,A0A0P0XFD2_ORYSJ,A0A0P0XT60_ORYSJ,A0A0P0XFY8_ORYSJ Os09g0321900 OJ1742_G01.34 OsJ_28851 OSNPB_090321900,Os10g0190000 LOC_Os10g11260 Os10g0190000 OSNPB_100190000,Os08g0374100 OSNPB_080374100,Os10g0190000 OSNPB_100190000 ENOG411DTBM Q9FKJ0 FK132_ARATH F-box/kelch-repeat protein At5g60570 43713 F-box/kelch-repeat protein At5g60570 cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2175143; AT5G60570 F-box kelch-repeat protein Os04g0619300 protein (Fragment) A0A0P0WEY8,A0A0P0WES8 A0A0P0WEY8_ORYSJ,A0A0P0WES8_ORYSJ Os04g0619300 OSNPB_040619300 ENOG411DTBJ T12H20.10 O82487 O82487_ARATH Phosphoenolpyruvate carboxylase family protein (Putative aldolase) (T12H20.10 protein) ARA:AT4G10750-MONOMER; 38404 Phosphoenolpyruvate carboxylase family protein (Putative aldolase) (T12H20.10 protein) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; plastid [GO:0009536]; aldehyde-lyase activity [GO:0016832]; carbohydrate metabolic process [GO:0005975] locus:2132726; AT4G10750 Aldolase Os09g0529900 protein (Putative 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase) Q69NF8 Q69NF8_ORYSJ Os09g0529900 Os09g0529900 OJ1531_B07.21 OSNPB_090529900 ENOG411DTBI OTC O50039 OTC_ARATH Ornithine carbamoyltransferase, chloroplastic (EC 2.1.3.3) (Ornithine transcarbamylase) (OTCase) MetaCyc:AT1G75330-MONOMER; R-ATH-70635; Biosynthesis of secondary metabolites (01110),Arginine and proline metabolism (00330),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 2.1.3.3 41002 Ornithine carbamoyltransferase, chloroplastic (EC 2.1.3.3) (Ornithine transcarbamylase) (OTCase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; amino acid binding [GO:0016597]; ornithine carbamoyltransferase activity [GO:0004585]; arginine biosynthetic process via ornithine [GO:0042450]; urea cycle [GO:0000050] locus:2018467; AT1G75330 ornithine carbamoyltransferase Os02g0704800 protein (Putative ornithine carbamoyltransferase) (cDNA, clone: J100039M06, full insert sequence) Q6YVI0 Q6YVI0_ORYSJ Os02g0704800 OsJ_08078 OSNPB_020704800 P0724B10.38 ENOG411DSH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ankyrin repeat family protein Os07g0193200 protein,Os07g0193400 protein,Os12g0229600 protein (Fragment) Q0D804,A0A0P0X372,A0A0P0Y8B0 Q0D804_ORYSJ,A0A0P0X372_ORYSJ,A0A0P0Y8B0_ORYSJ Os07g0193200 Os07g0193200 OsJ_23419 OSNPB_070193200,Os07g0193400 OSNPB_070193400,Os12g0229600 OSNPB_120229600 ENOG411E2G0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Parkin co-regulated protein NA NA NA NA NA NA NA ENOG411E2G1 A0A1I9LRS3,A0A178V841,A0A1I9LRS5,F4J5R1 A0A1I9LRS3_ARATH,A0A178V841_ARATH,A0A1I9LRS5_ARATH,F4J5R1_ARATH RING/FYVE/PHD-type zinc finger family protein 74193,75256,65662,77473 RING/FYVE/PHD-type zinc finger family protein metal ion binding [GO:0046872],plasmodesma [GO:0009506]; metal ion binding [GO:0046872] locus:2083715; AT3G52100 PHD NA NA NA NA NA NA NA ENOG411E2G2 A0A1I9LQP6,Q8GYA2 A0A1I9LQP6_ARATH,Q8GYA2_ARATH RING/U-box superfamily protein,At3g05250 (RING/U-box superfamily protein) (Uncharacterized protein At3g05250/T12H1_22) 24699,32219 RING/U-box superfamily protein,At3g05250 (RING/U-box superfamily protein) (Uncharacterized protein At3g05250/T12H1_22) metal ion binding [GO:0046872] locus:2096264; AT3G05250 zinc finger NA NA NA NA NA NA NA ENOG411E2G3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os07g0683200 protein C7J5E1 C7J5E1_ORYSJ Os07g0683200 Os07g0683200 OSNPB_070683200 ENOG411E2G4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os02g0659800 protein,Os02g0659700 protein A3A9U2,A0A0P0VMI0 A3A9U2_ORYSJ,A0A0P0VMI0_ORYSJ Os02g0659800 OsJ_07817 OSNPB_020659800,Os02g0659700 OSNPB_020659700 ENOG411E2G5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 75 (OsPP2C75) (EC 3.1.3.16) Q2R637 P2C75_ORYSJ Os11g0417400 LOC_Os11g22404 ENOG411E2G6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411E2G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Germin-like proteinPredicted protein NA NA NA NA NA NA NA ENOG411E2G8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os06g0209100 protein (Putative aspartic proteinase nepenthesin I) Q69T49 Q69T49_ORYSJ Os06g0209100 OSNPB_060209100 P0664C05.28 ENOG411E2G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate-induced protein 1 conserved region Os06g0220300 protein (Putative phi-1) Q67W03 Q67W03_ORYSJ Os06g0220300 OSNPB_060220300 P0436F11.41 P0516A04.2 ENOG411E2GA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger Os11g0234200 protein (PHD-finger family protein, expressed) (PHD-finger, putative) (cDNA clone:001-124-H10, full insert sequence) Q53KE9 Q53KE9_ORYSJ Os11g0234200 LOC_Os11g12650 Os11g0234200 OSNPB_110234200 ENOG411E2GB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GH3 auxin-responsive promoter Probable indole-3-acetic acid-amido synthetase GH3.4 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 4) (OsGH3-4) Q60EJ6 GH34_ORYSJ GH3.4 Os05g0500900 LOC_Os05g42150 OsJ_19094 OSJNBa0017K09.2 FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ENOG411E2GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2GD AHL7 Q4V3E0 AHL7_ARATH AT-hook motif nuclear-localized protein 7 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 33151 AT-hook motif nuclear-localized protein 7 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2126946; AT4G00200 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411E2GE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif 2 Protein MEI2-like 3 (OML3) (MEI2-like protein 3),Os05g0102800 protein (Fragment) Q75M35,A0A0N7KK01 OML3_ORYSJ,A0A0N7KK01_ORYSJ ML3 Os05g0102800 LOC_Os05g01240 OsJ_16784 P0036D10.18 P0668H12.3,Os05g0102800 OSNPB_050102800 FUNCTION: Probable RNA-binding protein that may play a role in growth regulation. {ECO:0000250}. ENOG411E2GF AHG1 Q9FLI3,A0A1P8BDH5 P2C75_ARATH,A0A1P8BDH5_ARATH Probable protein phosphatase 2C 75 (AtPP2C75) (EC 3.1.3.16) (Protein ABA-HYPERSENSITIVE GERMINATION 1) (Protein phosphatase 2C AHG1) (PP2C AHG1),Protein phosphatase 2C family protein DISRUPTION PHENOTYPE: Hypersensitivity to ABA, salt and sucrose during seed germination. {ECO:0000269|PubMed:17461784}. ABA hypersensitive grows poorly in the presence of ABA. Sensitive to ABA-T. Hirayama-2007 FUNCTION: Negative regulator of abscisic acid (ABA) responses during seed germination. {ECO:0000269|PubMed:17461784}. 3.1.3.16 46043,42422 Probable protein phosphatase 2C 75 (AtPP2C75) (EC 3.1.3.16) (Protein ABA-HYPERSENSITIVE GERMINATION 1) (Protein phosphatase 2C AHG1) (PP2C AHG1),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; response to abscisic acid [GO:0009737],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] DEVELOPMENTAL STAGE: During germination, expressed in the embryo, vascular bundles and the root cap. In 6-day-old seedlings, expression in seed coat/endosperm disappears is detected only at the bases of the lateral root buds. Expressed in developing an mature siliques from 10 to 16 days after flowering (DAF). {ECO:0000269|PubMed:17461784}. locus:2165371; AT5G51760 protein phosphatase 2C 75-like NA NA NA NA NA NA NA ENOG411E2GG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2GH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0305900 protein (Putative R2R3 Myb transcription factor MYB-IF35) Q9FP39 Q9FP39_ORYSJ Os01g0305900 OsJ_01463 OSNPB_010305900 P0475H04.46 P0552C05.25 ENOG411E2GI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E2GJ BGLU14,BGLU15,BGLU12,BGLU13 Q9SLA0,O64879,Q9FH03,Q9LU02 BGL14_ARATH,BGL15_ARATH,BGL12_ARATH,BGL13_ARATH Beta-glucosidase 14 (AtBGLU14) (EC 3.2.1.21),Beta-glucosidase 15 (AtBGLU15) (EC 3.2.1.21),Beta-glucosidase 12 (AtBGLU12) (EC 3.2.1.21),Beta-glucosidase 13 (AtBGLU13) (EC 3.2.1.21) FUNCTION: Beta-glucosidase involved in the rapid degradation of flavonol 3-O-beta-glucoside-7-O-alpha-rhamnosides during abiotic stress recovery. No activity with quercetin 3-O-alpha-rhamnoside, quercetin 3-O-beta-galactoside and rutin. {ECO:0000269|PubMed:25468534}. ARA:AT2G25630-MONOMER;,ARA:AT2G44450-MONOMER;,ARA:AT5G42260-MONOMER;,ARA:AT5G44640-MONOMER; R-ATH-189085; 3.2.1.21; 3.2.1.21 55009,56905,56966,56957 Beta-glucosidase 14 (AtBGLU14) (EC 3.2.1.21),Beta-glucosidase 15 (AtBGLU15) (EC 3.2.1.21),Beta-glucosidase 12 (AtBGLU12) (EC 3.2.1.21),Beta-glucosidase 13 (AtBGLU13) (EC 3.2.1.21) plant-type cell wall [GO:0009505]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; pollen tube growth [GO:0009860]; response to hormone [GO:0009725]; response to salt stress [GO:0009651],apoplast [GO:0048046]; cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; kaempferol O-glucoside metabolic process [GO:0033329]; quercetin O-glucoside metabolic process [GO:0033302]; response to hormone [GO:0009725]; response to salt stress [GO:0009651],Golgi apparatus [GO:0005794]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; response to hormone [GO:0009725]; response to salt stress [GO:0009651] locus:2050306;,locus:2050605;,locus:2157632;,locus:2152160; AT2G25630,AT2G44450,AT5G42260,AT5G44640 Glycosyl hydrolase family 1 Os04g0474500 protein A0A0P0WBH2 A0A0P0WBH2_ORYSJ Os04g0474500 OSNPB_040474500 ENOG411E2GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HELP motif NA NA NA NA NA NA NA ENOG411E2GM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411E2GN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M3 NA NA NA NA NA NA NA ENOG411E2GP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0241000 protein (cDNA clone:002-171-G09, full insert sequence) Q9ARP7 Q9ARP7_ORYSJ Os01g0241000 Os01g0241000 OsJ_01062 OSJNBa0010K01.25 OSNPB_010241000 ENOG411E2GQ MIO24.10 Q9STJ8,Q9FLI2 Y4539_ARATH,Q9FLI2_ARATH Receptor-like serine/threonine-protein kinase At4g25390 (EC 2.7.11.1),Protein kinase superfamily protein (Similarity to protein kinase) 2.7.11.1 72240,73331 Receptor-like serine/threonine-protein kinase At4g25390 (EC 2.7.11.1),Protein kinase superfamily protein (Similarity to protein kinase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2138014;,locus:2165301; AT4G25390,AT5G51770 STYKc NA NA NA NA NA NA NA ENOG411E2GR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: cytoplasmic FMR1 interacting protein Os03g0143800 protein,Os03g0143851 protein (Fragment) A0A0P0VSX5,A0A0P0VSW4 A0A0P0VSX5_ORYSJ,A0A0P0VSW4_ORYSJ Os03g0143800 OSNPB_030143800,Os03g0143851 OSNPB_030143851 ENOG411E2GS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - F-box and DUF domain containing protein expressed Os01g0327900 protein,Os01g0328300 protein (cDNA clone:J033084P10, full insert sequence),Os01g0328300 protein Q0JN53,B7ESQ3,A0A0P0V2F3 Q0JN53_ORYSJ,B7ESQ3_ORYSJ,A0A0P0V2F3_ORYSJ Os01g0327900 Os01g0327900 OSNPB_010327900,Os01g0328300 OSNPB_010328300 ENOG411E2GT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Blight resistance protein RGA1-like protein (Os01g0520600 protein) Q5QLX2 Q5QLX2_ORYSJ Os01g0520600 B1168H06.37 OSNPB_010520600 ENOG411E2GU F4J4P1 F4J4P1_ARATH Optic atrophy 3 protein (OPA3) 22257 Optic atrophy 3 protein (OPA3) mitochondrion [GO:0005739]; regulation of lipid metabolic process [GO:0019216] locus:2085475; AT3G58150 Optic atrophy 3 protein (OPA3) Os01g0753150 protein A0A0P0V8D5 A0A0P0V8D5_ORYSJ Os01g0753150 OSNPB_010753150 ENOG411E2GV MFB13.11 Q94B75,Q9FLJ9 Q94B75_ARATH,Q9FLJ9_ARATH Transmembrane protein (Uncharacterized protein MFB13.11),Transmembrane protein 36402,40238 Transmembrane protein (Uncharacterized protein MFB13.11),Transmembrane protein integral component of membrane [GO:0016021] locus:2163143; AT5G61340 expressed protein Expressed protein (Os12g0577200 protein) Q2QN67 Q2QN67_ORYSJ Os12g0577200 LOC_Os12g38810 Os12g0577200 OSNPB_120577200 ENOG411E2GW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E2GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1191) Os06g0158800 protein (cDNA clone:J023048N12, full insert sequence) Q651S6 Q651S6_ORYSJ Os06g0158800 OsJ_20201 OSNPB_060158800 P0702F05.23 ENOG411E2GY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative ripening-related protein 4,Os06g0116933 protein (Fragment) Q9FWU1,A0A0P0WRK6 RIP4_ORYSJ,A0A0P0WRK6_ORYSJ Os10g0490666 Os10g0490600 LOC_Os10g34902 OsJ_31984 OSJNBa0051D19.14,Os06g0116933 OSNPB_060116933 ENOG411E2GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transcription factor Os01g0156000 protein (cDNA clone:002-119-G02, full insert sequence) Q0JQJ6 Q0JQJ6_ORYSJ Os01g0156000 Os01g0156000 OsJ_00436 OSNPB_010156000 ENOG411DY3D Q9M995 GUN5_ARATH Endoglucanase 5 (EC 3.2.1.4) (Endo-1,4-beta glucanase 5) ARA:AT1G48930-MONOMER; 3.2.1.4 69080 Endoglucanase 5 (EC 3.2.1.4) (Endo-1,4-beta glucanase 5) extracellular region [GO:0005576]; carbohydrate binding [GO:0030246]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245] locus:2028441; AT1G48930 Endoglucanase Endoglucanase 13 (EC 3.2.1.4) (Endo-1,4-beta glucanase 13) (OsGLU6) Q0J930 GUN13_ORYSJ GLU6 Os04g0674800 LOC_Os04g57860 OSJNBa0018M05.16 ENOG411DYMH Q9LIL4,A0A1I9LRN2 P24B3_ARATH,A0A1I9LRN2_ARATH Transmembrane emp24 domain-containing protein p24beta3 (p24 family protein beta2) (p24beta2) (p24 family protein beta3) (p24beta3),Emp24/gp25L/p24 family/GOLD family protein FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). {ECO:0000250}. 24282,20318 Transmembrane emp24 domain-containing protein p24beta3 (p24 family protein beta2) (p24beta2) (p24 family protein beta3) (p24beta3),Emp24/gp25L/p24 family/GOLD family protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2094364; AT3G22845 Transmembrane emp24 domain-containing protein Emp24/gp25L/p24 family protein, expressed (Os03g0744800 protein) (Putative cop-coated vesicle membrane protein) (cDNA clone:006-212-F12, full insert sequence),Os03g0744800 protein Q84MP2,A0A0P0W2X5 Q84MP2_ORYSJ,A0A0P0W2X5_ORYSJ OSJNBb0036F07.15 LOC_Os03g53310 Os03g0744800 OSNPB_030744800,Os03g0744800 OSNPB_030744800 ENOG411E6SX PCR9 P0CW98 PCR9_ARATH Protein PLANT CADMIUM RESISTANCE 9 (AtPCR9) FUNCTION: May be involved in cadmium resistance. {ECO:0000269|PubMed:15181212}. 16260 Protein PLANT CADMIUM RESISTANCE 9 (AtPCR9) integral component of membrane [GO:0016021] locus:2016625; AT1G58320 Protein PLANT CADMIUM RESISTANCE NA NA NA NA NA NA NA ENOG411DRYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Protein IN2-1 homolog A Q10N44 IN21A_ORYSJ Os03g0283200 LOC_Os03g17480 OsJ_009979 ENOG411EKVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CTLH Protein TPR3 (Aberrant spikelet and panicle1-related 1) (Protein ASP1-RELATED 1) (OsASPR1) (Topless-related protein 1) (OsTPR1) (Topless-related protein 3),Os03g0254700 protein (Fragment) Q10NY2,A0A0P0VVM3 TPR3_ORYSJ,A0A0P0VVM3_ORYSJ TPR3 ASPR1 TPR1 Os03g0254700 LOC_Os03g14980 OsJ_08437,Os03g0254700 OSNPB_030254700 FUNCTION: Probable downstream regulator of strigolactones signaling (By similarity). Functions in a complex with MODD and HDAC1 to down-regulate the histone acetylation level at BZIP46 target genes. BZIP46 is a positive regulator of abscisic acid (ABA) signaling and drought stress tolerance (PubMed:27468891). {ECO:0000250|UniProtKB:Q0J7U6, ECO:0000269|PubMed:27468891}. ENOG411EKVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CTLH Protein TPR2 (Aberrant spikelet and panicle 1) (Lissencephaly type-1-like 1) (OsLIS-L1) (Protein ASP1) (Protein LIS-L1) (Protein REL2) (Protein TPL) (OsTPL) (Ramosa1 enhancer locus 2) (OsREL2) (Topless-like protein) (Topless-related protein 2),Os08g0162100 protein (Fragment) Q0J7U6,A0A0P0XC79 TPR2_ORYSJ,A0A0P0XC79_ORYSJ TPR2 ASP1 LIS-L1 REL2 TPL Os08g0162100 LOC_Os08g06480 OsJ_26138 P0577B11.132,Os08g0162100 OSNPB_080162100 DISRUPTION PHENOTYPE: Semi-dwarf, with reduced male fertility and shorter panicles with arrested branches and abnormal spikelets. {ECO:0000269|PubMed:22020753, ECO:0000269|PubMed:22136599}. FUNCTION: Transcriptional corepressor involved in branch formation regulation, presumably by suppressing primary branch formation and promoting secondary branch formation (PubMed:22136599, Ref.7, PubMed:24336200). Required for the cell elongation in the first internode and pollen development (PubMed:22020753). Probable downstream regulator of strigolactones signaling important in axillary meristem maintenance (PubMed:22136599, Ref.7, PubMed:24336200). Acts in auxin signaling and is associated with the regulation of histone deacetylation (PubMed:22136599). {ECO:0000269|PubMed:22020753, ECO:0000269|PubMed:22136599, ECO:0000269|Ref.7, ECO:0000305|PubMed:24336200}. ENOG411EKVN MRH10.2 Q94C94,Q93XZ2,F4K7D1,F4I458 Q94C94_ARATH,Q93XZ2_ARATH,F4K7D1_ARATH,F4I458_ARATH Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At1g04140),AT5G43930 protein (Transducin family protein / WD-40 repeat family protein) (Uncharacterized protein At5g43930; MRH10.2),Transducin family protein / WD-40 repeat family protein 85675,78938,81863,86123 Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At1g04140),AT5G43930 protein (Transducin family protein / WD-40 repeat family protein) (Uncharacterized protein At5g43930; MRH10.2),Transducin family protein / WD-40 repeat family protein intracellular membrane-bounded organelle [GO:0043231]; autophagy [GO:0006914] locus:2172442;,locus:2020285; AT1G04140,AT5G43930 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKVZ DAD1 Q948R1 PLA11_ARATH Phospholipase A(1) DAD1, chloroplastic (EC 3.1.1.32) (Phospholipase A1-Ibeta1) (Protein DEFECTIVE IN ANTHER DEHISCENCE 1) (AtDAD1) DISRUPTION PHENOTYPE: Defective in anther dehiscence and pollen maturation. Delayed flower buds opening. {ECO:0000269|PubMed:11595796}. Delayed flower bud opening; Male sterile due to indehiscent anthers; Slightly smaller pollen-K. Okada-2001 FUNCTION: Sn-1-specific phospholipase that releases free fatty acids from phospholipids. Low activity on galactolipids and triacylglycerols. Catalyzes the initial step of jasmonic acid biosynthesis. Not essential for jasmonate biosynthesis after wounding or upon pathogen infection. {ECO:0000269|PubMed:11595796, ECO:0000269|PubMed:18267087, ECO:0000269|PubMed:20348210}. MISCELLANEOUS: Directly regulated at the transcription level by the floral homeotic gene AGAMOUS. MetaCyc:AT2G44810-MONOMER; 3.1.1.32; 3.1.1.32 49960 Phospholipase A(1) DAD1, chloroplastic (EC 3.1.1.32) (Phospholipase A1-Ibeta1) (Protein DEFECTIVE IN ANTHER DEHISCENCE 1) (AtDAD1) chloroplast [GO:0009507]; 1-acyl-2-lysophosphatidylserine acylhydrolase activity [GO:0052740]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; phosphatidylserine 1-acylhydrolase activity [GO:0052739]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Expressed in flower buds, but not in leaves or roots. Restricted to the stamen filaments immediately before flower opening. {ECO:0000269|PubMed:11595796, ECO:0000269|PubMed:18267087, ECO:0000269|PubMed:19527719}. AT2G44810 phospholipase A1 NA NA NA NA NA NA NA ENOG411EKVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase A(1) DAD1 chloroplastic NA NA NA NA NA NA NA ENOG411EKV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Non-LTR retroelement reverse transcriptase NA NA NA NA NA NA NA ENOG411E8SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BED zinc finger Os08g0393150 protein,Os12g0467450 protein (Fragment),Os04g0365550 protein,Os05g0219300 protein,Os03g0264950 protein,Os06g0575500 protein (Fragment) A0A0P0XFI0,A0A0P0YA24,A0A0N7KIW9,A0A0P0WJI1,A0A0P0VVT7,A0A0P0WYE3 A0A0P0XFI0_ORYSJ,A0A0P0YA24_ORYSJ,A0A0N7KIW9_ORYSJ,A0A0P0WJI1_ORYSJ,A0A0P0VVT7_ORYSJ,A0A0P0WYE3_ORYSJ Os08g0393150 OSNPB_080393150,Os12g0467450 OSNPB_120467450,Os04g0365550 OSNPB_040365550,Os05g0219300 OSNPB_050219300,Os03g0264950 OSNPB_030264950,Os06g0575500 OSNPB_060575500 ENOG411E8SP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8SQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0417700 protein (cDNA, clone: J090021H09, full insert sequence) B7F9L3 B7F9L3_ORYSJ Os05g0417700 OSNPB_050417700 ENOG411E8SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of Unknown Function (DUF1042) NA NA NA NA NA NA NA ENOG411E8SW SESA5 Q9FH31 2SS5_ARATH 2S seed storage protein 5 (Seed storage albumin 5) [Cleaved into: 2S seed storage protein 5 small subunit; 2S seed storage protein 5 large subunit (2S albumin isoform 5 large subunit)] Pollen development defective. FUNCTION: This is a 2S seed storage protein. 18871 2S seed storage protein 5 (Seed storage albumin 5) [Cleaved into: 2S seed storage protein 5 small subunit; 2S seed storage protein 5 large subunit (2S albumin isoform 5 large subunit)] nutrient reservoir activity [GO:0045735]; pollen development [GO:0009555] locus:2157528; AT5G54740 Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411E8ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411E8SZ T20N10_120 Q9LXS4 Q9LXS4_ARATH Uncharacterized protein T20N10_120 86077 Uncharacterized protein T20N10_120 locus:2099014; AT3G58770 NA NA NA NA NA NA NA NA ENOG411E8SX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0235400 protein (Fragment) A0A0P0WUY6 A0A0P0WUY6_ORYSJ Os06g0235400 OSNPB_060235400 ENOG411E8SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein NA NA NA NA NA NA NA ENOG411E8SF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8SD F18O21_210 Q9LYL8,A0A178VM87,A0A1I9LQ51,A0A1I9LQ50 Q9LYL8_ARATH,A0A178VM87_ARATH,A0A1I9LQ51_ARATH,A0A1I9LQ50_ARATH Uncharacterized protein F18O21_210,Uncharacterized protein 24299,25629,27791,25811 Uncharacterized protein F18O21_210,Uncharacterized protein locus:2078476; AT3G56250 NA NA NA NA NA NA NA NA ENOG411E8SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clusterin-associated protein-1 NA NA NA NA NA NA NA ENOG411E8SJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CS domain NA NA NA NA NA NA NA ENOG411E8SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain NA NA NA NA NA NA NA ENOG411E8SI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0208500 protein A3A4E0 A3A4E0_ORYSJ Os02g0208500 OsJ_05841 OSNPB_020208500 ENOG411E8SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F/Y-rich N-terminus NA NA NA NA NA NA NA ENOG411E8SM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) NA NA NA NA NA NA NA ENOG411E8S2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NIPSNAP NA NA NA NA NA NA NA ENOG411E8S3 CLE5,CLE6 Q8S8N2,Q8S8N3,A0A1P8B327 CLE5_ARATH,CLE6_ARATH,A0A1P8B327_ARATH CLAVATA3/ESR (CLE)-related protein 5 [Cleaved into: CLE5p],CLAVATA3/ESR (CLE)-related protein 6 [Cleaved into: CLE6p],CLAVATA3/ESR-RELATED 5 FUNCTION: Extracellular signal peptide that regulates cell fate. {ECO:0000269|PubMed:16489133}.,FUNCTION: Extracellular signal peptide that regulates cell fate. {ECO:0000269|PubMed:16407446, ECO:0000269|PubMed:16489133}. 9132,9192,12648 CLAVATA3/ESR (CLE)-related protein 5 [Cleaved into: CLE5p],CLAVATA3/ESR (CLE)-related protein 6 [Cleaved into: CLE6p],CLAVATA3/ESR-RELATED 5 extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275],extracellular space [GO:0005615]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in seedlings, stems, apex, flowers and siliques. {ECO:0000269|PubMed:12602871}.,TISSUE SPECIFICITY: Mostly expressed in roots, seedlings, stems and flowers, and, to a lower extent, in apex and siliques. {ECO:0000269|PubMed:12602871}. locus:504955982;,locus:505006281; AT2G31083,AT2G31085 clavata3 esr-related NA NA NA NA NA NA NA ENOG411E8S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os01g0768333 protein,Auxin responsive protein (Os03g0660300 protein) (Putative auxin responsive protein) Q5ZAQ7,Q75GP8 Q5ZAQ7_ORYSJ,Q75GP8_ORYSJ Os01g0768333 B1143G03.17 OSNPB_010768333,OSJNBb0065L20.15 Os03g0660300 LOC_Os03g45830 OsJ_11982 OSNPB_030660300 ENOG411E8S1 MDA7.16 Q9FKT7 Q9FKT7_ARATH Glycine-rich protein / oleosin (Uncharacterized protein At5g56100) (Uncharacterized protein At5g56100; MDA7.16) 15723 Glycine-rich protein / oleosin (Uncharacterized protein At5g56100) (Uncharacterized protein At5g56100; MDA7.16) integral component of membrane [GO:0016021] locus:2161805; AT5G56100 Oleosin NA NA NA NA NA NA NA ENOG411E8S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8S7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0505900 protein (cDNA clone:001-203-D05, full insert sequence) Q65X57 Q65X57_ORYSJ Os05g0505900 Os05g0505900 OJ1123_F01.10 OSNPB_050505900 ENOG411E8S4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0531200 protein (cDNA clone:002-180-D10, full insert sequence) Q8GVN9 Q8GVN9_ORYSJ P0681F05.128 Os07g0531200 OSNPB_070531200 ENOG411E8S5 F28G4.20 Q9LQI6 Q9LQI6_ARATH At1g17345 (F28G4.20 protein) (SAUR-like auxin-responsive protein family) FUNCTION: May be involved in the regulation of ethylene receptor signaling. Promotes cell expansion and plant growth. {ECO:0000269|PubMed:26207341}. MISCELLANEOUS: Plants silencing SAUR77 exhibit increased sensitivity to ethylene, while plants over-expressing SAUR77 display reduced ethylene sensitivity. Plants over-expressing SAUR77 exhibit increased rosette diameters. {ECO:0000269|PubMed:26207341}. 15084 At1g17345 (F28G4.20 protein) (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:1005716750; AT1G17345 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E8S8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411DZ0C TPR8 F4JG03,F4JG04 F4JG03_ARATH,F4JG04_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 46667,46539 Tetratricopeptide repeat (TPR)-like superfamily protein locus:2137440; AT4G08320 Tetratricopeptide repeat Os04g0690300 protein B9FDQ8 B9FDQ8_ORYSJ Os04g0690300 OsJ_16727 OSNPB_040690300 ENOG411DZ0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain Os04g0654800 protein,Os04g0655000 protein A0A0P0WFW5,A0A0P0WG14 A0A0P0WFW5_ORYSJ,A0A0P0WG14_ORYSJ Os04g0654800 OSNPB_040654800,Os04g0655000 OSNPB_040655000 ENOG411DZ0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Helix-loop-helix DNA-binding domain containing protein, expressed (Os11g0601700 protein) Q2R1K8 Q2R1K8_ORYSJ Os11g0601700 LOC_Os11g38870 Os11g0601700 OsJ_34429 OSNPB_110601700 ENOG411DZ0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os01g0732300 protein (cDNA clone:002-142-F05, full insert sequence) Q5JM77 Q5JM77_ORYSJ Os01g0732300 Os01g0732300 OSJNBb0036G09.7 OSNPB_010732300 ENOG411DZ0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0213600 protein),Os10g0408700 protein (Fragment) Q10Q13,A0A0N7KRS0 Q10Q13_ORYSJ,A0A0N7KRS0_ORYSJ Os03g0213600 LOC_Os03g11490 Os03g0213600 OSNPB_030213600,Os10g0408700 OSNPB_100408700 ENOG411DZ0X Q941A9,F4IE56,F4I0I6 Q941A9_ARATH,F4IE56_ARATH,F4I0I6_ARATH At1g26300/F28B23_4 (BSD domain-containing protein) (mRNA, clone: RAFL21-67-F15) (mRNA, clone: RAFL25-24-E24),BSD domain-containing protein 34819,23601,34767 At1g26300/F28B23_4 (BSD domain-containing protein) (mRNA, clone: RAFL21-67-F15) (mRNA, clone: RAFL25-24-E24),BSD domain-containing protein locus:2028761;,locus:2033218; AT1G26300,AT1G69030 BSD domain-containing protein Os02g0187900 protein,Os02g0726400 protein,Os02g0726400 protein (Fragment) Q6ZHS3,Q6Z343,A0A0P0VNW8 Q6ZHS3_ORYSJ,Q6Z343_ORYSJ,A0A0P0VNW8_ORYSJ Os02g0187900 OJ1073_F05.33 OJ1145_F01.8 OsJ_05680 OSNPB_020187900,Os02g0726400 B1121A12.15 OsJ_08222 OSNPB_020726400,Os02g0726400 OSNPB_020726400 ENOG411E7J7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os08g0534300 protein (Os08g0534950 protein),Os02g0305950 protein (Os02g0306200 protein) Q6YZG3,Q6K2Z2 Q6YZG3_ORYSJ,Q6K2Z2_ORYSJ Os08g0534300 Os08g0534950 OSJNBa0033D24.8 OSNPB_080534300 OSNPB_080534950 P0702C09.13 P0702C09.23,Os02g0305950 Os02g0306200 OSNPB_020305950 P0543C11.18 ENOG411EMEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EMEU MSD23.5 Q6NM69 Q6NM69_ARATH At5g46870 (RNA-binding (RRM/RBD/RNP motifs) family protein) 31897 At5g46870 (RNA-binding (RRM/RBD/RNP motifs) family protein) RNA binding [GO:0003723] locus:2172947; AT5G46870 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sigma factor SigB regulation protein RsbQ-like NA NA NA NA NA NA NA ENOG411EMEE A0A1P8ASB2,A0A1P8ASE4,A0A1P8ASC7,F4HXL1,A0A1P8ASG8,A0A1P8ASB4,A0A1P8ASB1 A0A1P8ASB2_ARATH,A0A1P8ASE4_ARATH,A0A1P8ASC7_ARATH,F4HXL1_ARATH,A0A1P8ASG8_ARATH,A0A1P8ASB4_ARATH,A0A1P8ASB1_ARATH p-loop containing nucleoside triphosphate hydrolases superfamily protein 72553,59532,74688,75759,75018,69731,77840 p-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2196115; AT1G02670 SNF2 domain-containing protein helicase domain-containing protein RING finger domain-containing protein NA NA NA NA NA NA NA ENOG411EMED Q2HIU1 Q2HIU1_ARATH At4g29070 (Phospholipase A2 family protein) 29653 At4g29070 (Phospholipase A2 family protein) phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; phospholipid metabolic process [GO:0006644] locus:2119966; AT4G29070 S1 RNA binding domain NA NA NA NA NA NA NA ENOG411EMEA EBF2 Q708Y0 EBF2_ARATH EIN3-binding F-box protein 2 Double mutants exhibits a clearly detectable delay in bolting time: plants had still not bolted by ~25 days after the mean bolting time of WT in LDs.,GA treatment did not restore a normal growth phenotype or floral transition to double mutant plants grown in SDs.,The double mutant is still responsive to ethylene. Moreover inhibitors of ethylene perception or biosynthesis including AgNO3 and aminoethoxyvinyl glycine (AVG) could not suppress the constitutive triple response (ctr1).,The mutant shows dwarfed growth supernumerary epinastically curled leaves early senescence and abnormal flowers with the gynoecium protruding from the unopened floral buds. However the phenotypes seen in double mutant plants are more severe than those seen in ctr1. This becomes apparent at about two weeks after germination except for the reduced root growth which is already obvious at three days after germination. Moreover unlike the ctr1 mutation that has a reduced transmission of the ctr1 allele relative to wild-type and infertile early flowers the double mutants have a greatly reduced fertility but can readily be pollinated with wild-type pollen.,When germinated in the dark the mutant display a ctr1-like phenotype (short hypocotyls short roots and exaggerated apical hooks).,When grown in the light the double mutants display slightly longer hypocotyls curled unexpanded cotyledons and short and thicker roots with ectopic root hairs similar to the ctr1 mutant. Moreover the average area of the leaf epidermal cells was reduced 5-fold compared to wild type.,ctr1-like phenotype (short hypocotyls short roots and exaggerated apical hooks).,Strong growth arrest following germination even in the absence of ethylene. Plants fail to develop true leaves.,Modest rescue of the ebf1-3 ebf2-3 phenotype. Seedlings continue grow and develop at a slow pace after germination. Cotyledons partially expanded and turned pale green. Stunted root densely covered with root hair. Plants never flowered or set seeds.,More dramatic rescue of the ebf1-3 ebf2-3 phenotype. Seedlings grow rapidly after germination and eventually developed large rosette of true leaves. However the leaves are epinastic with elongated petioles and small leaf blades. Produced fertile but shorter flowers and viable seeds.,Almost complete rescue of the ebf1-3 ebf2-3 phenotype. Plants are phenotypically indistinguishable from the wild type.,Flowering of the mutant is not significantly delayed.,The mutants were indistinguishable from wild-type under normal growth conditions. However when germinated in the dark all three mutant alleles showed a slightly exaggerated response to ACC. Nevertheless striking developmental alterations resembling those of the ctr1 mutants were observed. Altered response to ACC (ethylene precursor) in the dark-P. Genschik-2003 FUNCTION: Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. {ECO:0000269|PubMed:14675533}. PATHWAY: Protein modification; protein ubiquitination. 66061 EIN3-binding F-box protein 2 nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; protein ubiquitination [GO:0016567]; response to ethylene [GO:0009723]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14675533}. locus:2145512; AT5G25350 EIN3-binding F box protein 2 NA NA NA NA NA NA NA ENOG411EMEB EBF1 Q9SKK0 EBF1_ARATH EIN3-binding F-box protein 1 (F-box/LRR-repeat protein 6) Flowering of the mutant is not significantly delayed.,The mutants were indistinguishable from wild-type under normal growth conditions. However when germinated in the dark all three mutant alleles showed a slightly exaggerated response to ACC. Nevertheless striking developmental alterations resembling those of the ctr1 mutants were observed.,Double mutants exhibits a clearly detectable delay in bolting time: plants had still not bolted by ~25 days after the mean bolting time of WT in LDs.,GA treatment did not restore a normal growth phenotype or floral transition to double mutant plants grown in SDs.,The double mutant is still responsive to ethylene. Moreover inhibitors of ethylene perception or biosynthesis including AgNO3 and aminoethoxyvinyl glycine (AVG) could not suppress the constitutive triple response (ctr1).,The mutant shows dwarfed growth supernumerary epinastically curled leaves early senescence and abnormal flowers with the gynoecium protruding from the unopened floral buds. However the phenotypes seen in double mutant plants are more severe than those seen in ctr1. This becomes apparent at about two weeks after germination except for the reduced root growth which is already obvious at three days after germination. Moreover unlike the ctr1 mutation that has a reduced transmission of the ctr1 allele relative to wild-type and infertile early flowers the double mutants have a greatly reduced fertility but can readily be pollinated with wild-type pollen.,When germinated in the dark the mutant display a ctr1-like phenotype (short hypocotyls short roots and exaggerated apical hooks).,When grown in the light the double mutants display slightly longer hypocotyls curled unexpanded cotyledons and short and thicker roots with ectopic root hairs similar to the ctr1 mutant. Moreover the average area of the leaf epidermal cells was reduced 5-fold compared to wild type.,ctr1-like phenotype (short hypocotyls short roots and exaggerated apical hooks).,Strong growth arrest following germination even in the absence of ethylene. Plants fail to develop true leaves.,Modest rescue of the ebf1-3 ebf2-3 phenotype. Seedlings continue grow and develop at a slow pace after germination. Cotyledons partially expanded and turned pale green. Stunted root densely covered with root hair. Plants never flowered or set seeds.,More dramatic rescue of the ebf1-3 ebf2-3 phenotype. Seedlings grow rapidly after germination and eventually developed large rosette of true leaves. However the leaves are epinastic with elongated petioles and small leaf blades. Produced fertile but shorter flowers and viable seeds.,Almost complete rescue of the ebf1-3 ebf2-3 phenotype. Plants are phenotypically indistinguishable from the wild type. Altered response to ACC (ethylene precursor)-P. Genschik-2003 FUNCTION: Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene. {ECO:0000269|PubMed:14675533}. PATHWAY: Protein modification; protein ubiquitination. 66589 EIN3-binding F-box protein 1 (F-box/LRR-repeat protein 6) nucleus [GO:0005634]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; protein ubiquitination [GO:0016567]; response to ethylene [GO:0009723]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14675533}. locus:2040105; AT2G25490 ein3-binding F box protein NA NA NA NA NA NA NA ENOG411EME8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein Os01g0881900 protein (Putative F-box protein Fbl2) (cDNA clone:J033110C14, full insert sequence),Os05g0425700 protein (Unknow protein) Q8RZQ3,Q60EC4 Q8RZQ3_ORYSJ,Q60EC4_ORYSJ Os01g0881900 Os01g0881900 B1065E10.14 OsJ_04303 OSNPB_010881900 P0018C10.73,Os05g0425700 Os05g0425700 OsJ_18605 OSJNBa0044P19.3 OSNPB_050425700 ENOG411E7JJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0118900 protein (Unknow protein) Q5W7C0 Q5W7C0_ORYSJ Os05g0118900 OSNPB_050118900 P0496H07.23 ENOG411DWB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E7JE T28A8_140 Q9LZG3,A0A1I9LQ12 Q9LZG3_ARATH,A0A1I9LQ12_ARATH Uncharacterized protein T28A8_140,Uncharacterized protein 30145,20946 Uncharacterized protein T28A8_140,Uncharacterized protein vacuole [GO:0005773] locus:2101089; AT3G43850 Inherit from KOG: Rna binding protein NA NA NA NA NA NA NA ENOG411EG08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EG00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EG02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG03 Q9SHJ7 Q9SHJ7_ARATH F12K11.13 (Uncharacterized protein At1g06540) 13031 F12K11.13 (Uncharacterized protein At1g06540) locus:2009195; AT1G06540 NA NA NA NA NA NA NA NA ENOG411EG04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0667601 protein,Os07g0667700 protein,Os07g0667500 protein A0A0P0XAE7,A0A0P0XAJ6,A0A0P0X9W6 A0A0P0XAE7_ORYSJ,A0A0P0XAJ6_ORYSJ,A0A0P0X9W6_ORYSJ Os07g0667601 OSNPB_070667601,Os07g0667700 OSNPB_070667700,Os07g0667500 OSNPB_070667500 ENOG411EG05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG06 Q9C6N1,Q1G3E3,Q9SKD4,Q9SJC7,O64712,Q9LSE9,F4JA77,F4K7A8,Q3ECT2,Q3ECB5,F4I5Q9 Q9C6N1_ARATH,Q1G3E3_ARATH,Q9SKD4_ARATH,Q9SJC7_ARATH,O64712_ARATH,Q9LSE9_ARATH,F4JA77_ARATH,F4K7A8_ARATH,Q3ECT2_ARATH,Q3ECB5_ARATH,F4I5Q9_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein F28L5.12),Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein At2g46460),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Putative non-LTR retrolelement reverse transcriptase),Putative reverse transcriptase (Ribonuclease H-like superfamily protein),Reverse transcriptase-like protein (Ribonuclease H-like superfamily protein),Non-LTR retroelement reverse transcriptase,Non-LTR retrolelement reverse transcriptase-like protein,Ribonuclease H superfamily polynucleotidyl transferase 25121,16264,18955,26393,42165,40583,25010,19806,8587,12009,30066 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein F28L5.12),Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein At2g46460),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Putative non-LTR retrolelement reverse transcriptase),Putative reverse transcriptase (Ribonuclease H-like superfamily protein),Reverse transcriptase-like protein (Ribonuclease H-like superfamily protein),Non-LTR retroelement reverse transcriptase,Non-LTR retrolelement reverse transcriptase-like protein,Ribonuclease H superfamily polynucleotidyl transferase nucleic acid binding [GO:0003676]; transferase activity [GO:0016740],nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964],transferase activity [GO:0016740] locus:2029841;,locus:4010713531;,locus:2039129;,locus:2058379;,locus:2065330;,locus:2090215;,locus:2079043;,locus:504954884;,locus:2011917;,locus:1005716670;,locus:1006230762; AT1G27870,AT1G47497,AT2G46460,AT2G04420,AT2G02650,AT3G25270,AT3G32130,AT5G43755,AT1G50160,AT1G77815,AT1G04625 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EG07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EG0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EG0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Touch receptor neuron protein Mec-17 NA NA NA NA NA NA NA ENOG411EG0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Calcium binding protein Os03g0812800 protein,Os03g0813500 protein A0A0N7KI98,A0A0P0W4M1 A0A0N7KI98_ORYSJ,A0A0P0W4M1_ORYSJ Os03g0812800 OSNPB_030812800,Os03g0813500 OSNPB_030813500 ENOG411EG0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integrase core domain NA NA NA NA NA NA NA ENOG411EG0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411EG0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: insulin-degrading enzyme NA NA NA NA NA NA NA ENOG411EG0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EG0I Q9LRU1,Q3EBD9,Q8S8C9,A8MQ83,A8MRH6,A8MS74 Q9LRU1_ARATH,Q3EBD9_ARATH,Q8S8C9_ARATH,A8MQ83_ARATH,A8MRH6_ARATH,A8MS74_ARATH ECA1 gametogenesis family protein (DUF784),Prolamin-like protein (DUF784),At2g21655 (ECA1 gametogenesis family protein (DUF784)) (Expressed protein) 18129,16814,18016,17632,17951,17705 ECA1 gametogenesis family protein (DUF784),Prolamin-like protein (DUF784),At2g21655 (ECA1 gametogenesis family protein (DUF784)) (Expressed protein) locus:4010713791;,locus:504955608;,locus:505006265;,locus:4010713642;,locus:4010713790;,locus:4010713657; AT3G30247,AT3G01185,AT2G21655,AT2G21727,AT3G29797,AT2G25482 at2g21655 (e NA NA NA NA NA NA NA ENOG411EG0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0M Q5BPK0,A8MQE4 Q5BPK0_ARATH,A8MQE4_ARATH Egg cell-secreted-like protein (DUF1278) 13076,13141 Egg cell-secreted-like protein (DUF1278) locus:504955408;,locus:4010713622; AT4G35165,AT2G14378 Pfam:DUF1278 NA NA NA NA NA NA NA ENOG411EG0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0832800 protein A0A0P0W5S0 A0A0P0W5S0_ORYSJ Os03g0832800 OSNPB_030832800 ENOG411EG0D SMR16 Q9LN05,A0A1P8AMD3 SMR16_ARATH,A0A1P8AMD3_ARATH Cyclin-dependent protein kinase inhibitor SMR16 (Protein SIAMESE-RELATED 16),Uncharacterized protein FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250|UniProtKB:Q9LZ78}. 13865,12234 Cyclin-dependent protein kinase inhibitor SMR16 (Protein SIAMESE-RELATED 16),Uncharacterized protein protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:504956111; AT1G08035 NA NA NA NA NA NA NA NA ENOG411EG0E AGAMOUS-like 85,AGL58,AGL59,AGL64 Q9ZVL8,Q9SGP3,Q9SGP4,Q7XJK9 Q9ZVL8_ARATH,Q9SGP3_ARATH,Q9SGP4_ARATH,Q7XJK9_ARATH AGAMOUS-like 85 (T22H22.17 protein),AGAMOUS-like 58 (F3M18.11),AGAMOUS-like 59 (F3M18.10),AGAMOUS-like 64 (MADS-box protein AGL64) 18175,21145,20637,21176 AGAMOUS-like 85 (T22H22.17 protein),AGAMOUS-like 58 (F3M18.11),AGAMOUS-like 59 (F3M18.10),AGAMOUS-like 64 (MADS-box protein AGL64) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2199444;,locus:2032543;,locus:2032537;,locus:4010713489; AT1G54760,AT1G28450,AT1G28460,AT1G29962 Agamous-like NA NA NA NA NA NA NA ENOG411EG0F MNC6.14,MNC6.15,MDC12.20 Q8GX54,Q6NKV5,Q9FJC4,Q1G387,Q9FJC3,Q9C9N9,Q6AWW2,Q2V4E5,A8MRV8 Q8GX54_ARATH,Q6NKV5_ARATH,Q9FJC4_ARATH,Q1G387_ARATH,Q9FJC3_ARATH,Q9C9N9_ARATH,Q6AWW2_ARATH,Q2V4E5_ARATH,A8MRV8_ARATH At5g63230 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein At5g63230/MDC12_20),At4g09090 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein,At1g66870 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein F4N21_2),At4g16165 (Carbohydrate-binding X8 domain superfamily protein) ARA:GQT-61-MONOMER;,ARA:GQT-1456-MONOMER;,ARA:GQT-1944-MONOMER; 12088,12442,12290,12215,12130,11871,12075,12408,12322 At5g63230 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein At5g63230/MDC12_20),At4g09090 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein,At1g66870 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein F4N21_2),At4g16165 (Carbohydrate-binding X8 domain superfamily protein) locus:4010714074;,locus:2122338;,locus:2168621;,locus:4515103362;,locus:2168631;,locus:2033314;,locus:1006230336;,locus:1009023140;,locus:2161927; AT5G63225,AT4G09090,AT5G53600,AT4G09462,AT5G53610,AT1G66870,AT4G16165,AT1G66855,AT5G63230 X8 domain NA NA NA NA NA NA NA ENOG411EG0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GntP family permease NA NA NA NA NA NA NA ENOG411E1R6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DnaJ (Hsp40) homolog subfamily C member 6 200 kDa antigen p200-like protein (Os01g0355500 protein) (cDNA clone:J023078P09, full insert sequence),Os01g0355500 protein (Fragment) Q5ZCQ7,A0A0P0V2D1 Q5ZCQ7_ORYSJ,A0A0P0V2D1_ORYSJ Os01g0355500 B1157F09.8 OSNPB_010355500 P0458A05.26,Os01g0355500 OSNPB_010355500 ENOG411E1R2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative Phosphatase Os02g0226200 protein (Putative phosphatase, orphan 1) Q6H6J4 Q6H6J4_ORYSJ Os02g0226200 Os02g0226200 OSNPB_020226200 P0495C02.22 ENOG411E1R8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant zinc cluster domain Os03g0798500 protein A0A0P0W498 A0A0P0W498_ORYSJ Os03g0798500 OSNPB_030798500 ENOG411E1R9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF604 Fringe-related protein-like (Os02g0681100 protein) (cDNA clone:J023106A15, full insert sequence),OSJNBa0011J08.14 protein (Os04g0578800 protein) (cDNA clone:J023076N09, full insert sequence) Q6EPN2,Q7XQ75 Q6EPN2_ORYSJ,Q7XQ75_ORYSJ Os02g0681100 OSNPB_020681100 P0663F07.33,Os04g0578800 OsJ_15883 OSJNBa0011J08.14 OSNPB_040578800 ENOG411DZY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os04g0472100 protein (Fragment) A0A0P0WBH5 A0A0P0WBH5_ORYSJ Os04g0472100 OSNPB_040472100 ENOG411DZY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZY1 MBG8.15 Q9FFU2 Q9FFU2_ARATH At5g54880/MBG8_15 (DTW domain-containing protein) 44443 At5g54880/MBG8_15 (DTW domain-containing protein) locus:2160180; AT5G54880 DTW domain DTW domain containing protein, expressed (Os03g0568600 protein) (cDNA clone:J033087P12, full insert sequence) Q10I12 Q10I12_ORYSJ Os03g0568600 LOC_Os03g37100 Os03g0568600 OsJ_11483 OSJNBa0004B24.4 OSNPB_030568600 ENOG411DZY0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Harpin-induced protein 1 containing protein, expressed (Os03g0836300 protein) (Putative harpin inducing protein) (cDNA clone:006-209-C03, full insert sequence),Os11g0445475 protein (Fragment) Q75LJ9,A0A0P0Y276 Q75LJ9_ORYSJ,A0A0P0Y276_ORYSJ LOC_Os03g62010 Os03g0836300 OsJ_13273 OSJNBa0096I06.6 OSNPB_030836300,Os11g0445475 OSNPB_110445475 ENOG411DZY2 F4J381 F4J381_ARATH FG-GAP repeat-containing protein 77675 FG-GAP repeat-containing protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774] locus:2080988; AT3G51050 Inherit from euNOG: FG-GAP repeat-containing protein Os02g0100700 protein (cDNA clone:J013170D03, full insert sequence),Os02g0100700 protein (Fragment) Q6YU98,A0A0N7KEI4 Q6YU98_ORYSJ,A0A0N7KEI4_ORYSJ Os02g0100700 Os02g0100700 B1370C05.8 OsJ_04982 OSNPB_020100700,Os02g0100700 OSNPB_020100700 ENOG411DZY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family B1168G10.9 protein (OSJNBb0015C06.1 protein) (Os04g0172400 protein) (cDNA clone:002-120-G03, full insert sequence),Os04g0194466 protein,Os06g0699100 protein,Os04g0175500 protein Q7XRZ5,A0A0P0W7P4,A0A0P0X0M7,A0A0P0W7R9 Q7XRZ5_ORYSJ,A0A0P0W7P4_ORYSJ,A0A0P0X0M7_ORYSJ,A0A0P0W7R9_ORYSJ Os04g0172400 Os04g0172400 B1168G10.9 OsJ_31900 OSJNBb0015C06.1 OSNPB_040172400,Os04g0194466 OSNPB_040194466,Os06g0699100 OSNPB_060699100,Os04g0175500 OSNPB_040175500 ENOG411DZY4 T3A5.100,MSN2.10 Q9SCQ4,Q9LVQ9,F4J1Z7 Q9SCQ4_ARATH,Q9LVQ9_ARATH,F4J1Z7_ARATH Protein kinase ATN1-like protein (Protein kinase superfamily protein),Protein kinase superfamily protein 43104,46012,42427 Protein kinase ATN1-like protein (Protein kinase superfamily protein),Protein kinase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2101689;,locus:2173674;,locus:2101699; AT3G50720,AT5G66710,AT3G50730 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DZY7 Q9FHJ2,Q84WD3,Q9FHI7 DRL34_ARATH,DRL26_ARATH,DRL35_ARATH Probable disease resistance protein At5g45440,Probable disease resistance protein At4g19060,Probable disease resistance protein At5g45490 FUNCTION: Possible disease resistance protein. {ECO:0000250}. 39446,43575,40426 Probable disease resistance protein At5g45440,Probable disease resistance protein At4g19060,Probable disease resistance protein At5g45490 ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952] locus:2163498;,locus:2117164;,locus:2163568; AT5G45440,AT4G19060,AT5G45490 disease resistance Blight resistance protein RGA3-like (Os01g0798900 protein) Q8LJ96 Q8LJ96_ORYSJ Os01g0798900 OsJ_03758 OSNPB_010798900 P0691E06.15 ENOG411DZY6 EMB2820 F4KH85,F4KH86 F4KH85_ARATH,F4KH86_ARATH Cytidine/deoxycytidylate deaminase family protein Embryo defective; Preglobular-D. Meinke-2009 FUNCTION: Involved in RNA editing. Catalyzes the specific deamination of adenosine-34 in several cytosolic tRNA species. Generates inosine at the wobble position of the anticodon loop. {ECO:0000269|PubMed:25315605}. 45620,45098 Cytidine/deoxycytidylate deaminase family protein catalytic activity [GO:0003824]; RNA modification [GO:0009451],catalytic activity [GO:0003824] locus:2176816; AT5G24670 Hydrolase zinc ion binding protein Cytidine/deoxycytidylate deaminase-like protein (Os09g0128600 protein) (cDNA clone:J013067M21, full insert sequence),Os09g0128600 protein (Fragment),Os09g0128600 protein Q6ERC2,A0A0N7KQD6,A0A0P0XJG3,A0A0P0XJS4 Q6ERC2_ORYSJ,A0A0N7KQD6_ORYSJ,A0A0P0XJG3_ORYSJ,A0A0P0XJS4_ORYSJ P0448B11.8-1 OJ1610_C11.26-1 Os09g0128600 OsJ_28439 OSNPB_090128600,Os09g0128600 OSNPB_090128600 ENOG411DZYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Calcium-dependent protein kinase 22 (OsCDPK22) (OsCPK22) (EC 2.7.11.1) Q69IM9 CDPKM_ORYSJ CPK22 Os09g0514200 LOC_Os09g33910 P0450E05.16 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411DZYH MTERF6,pde191 Q9SZL6,F4JSZ0,F4JSY9 MTEF6_ARATH,F4JSZ0_ARATH,F4JSY9_ARATH Transcription termination factor MTERF6, chloroplastic/mitochondrial (Mitochondrial transcription termination factor 6) (Protein PIGMENT DEFECTIVE 191),Mitochondrial transcription termination factor family protein DISRUPTION PHENOTYPE: Small white seeds, with defective choloroplasts, that are unable to germinate on soil. Albino seedlings that die rapidly when grown on synthetic medium. {ECO:0000269|PubMed:26152711}. Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: Transcription termination factor essential for chloroplast development. Required for maturation of 16S rRNA, 18S rRNA and 23S rRNA in the chloroplast. Binds to a specific region within the tRNA(Ile)(GAU) gene at a position adjacent to and downstream of the 16S rRNA gene. Required for the maturation of tRNA(Ile)(GAU). Binds to double-stranded DNA. 37888,41281,43103 Transcription termination factor MTERF6, chloroplastic/mitochondrial (Mitochondrial transcription termination factor 6) (Protein PIGMENT DEFECTIVE 191),Mitochondrial transcription termination factor family protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; double-stranded DNA binding [GO:0003690]; RNA binding [GO:0003723]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; tRNA processing [GO:0008033],double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355],thylakoid membrane [GO:0042651]; DNA binding [GO:0003677]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2120998; AT4G38160 mTERF Os08g0515800 protein (cDNA clone:001-039-E10, full insert sequence) Q84Z62 Q84Z62_ORYSJ P0686C03.126 Os08g0515800 OsJ_27927 OSNPB_080515800 ENOG411DZYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411DZYJ MPO12.6 Q9FNE4,A0A1P8BF80 Q9FNE4_ARATH,A0A1P8BF80_ARATH Tudor/PWWP/MBT superfamily protein 114239,113530 Tudor/PWWP/MBT superfamily protein nucleolus [GO:0005730]; plasmodesma [GO:0009506] locus:2170563; AT5G40340 PWWP domain NA NA NA NA NA NA NA ENOG411DZYM F12F1.23 O65389 O65389_ARATH F12F1.23 protein (Uncharacterized protein At1g11915) (Wall-associated receptor kinase galacturonan-binding protein) 36743 F12F1.23 protein (Uncharacterized protein At1g11915) (Wall-associated receptor kinase galacturonan-binding protein) integral component of membrane [GO:0016021]; kinase activity [GO:0016301]; polysaccharide binding [GO:0030247] locus:505006118; AT1G11915 NA Os06g0364500 protein Q69KT1 Q69KT1_ORYSJ Os06g0364500 OSJNBa0034G14.6 OSNPB_060364500 P0543C04.42 ENOG411DZYN Q9C9V9 Q9C9V9_ARATH Golgi transport complex protein-like protein (Putative golgi transport complex protein; 67058-70172) R-ATH-6807878;R-ATH-6811438; 91651 Golgi transport complex protein-like protein (Putative golgi transport complex protein; 67058-70172) cytosol [GO:0005829]; Golgi transport complex [GO:0017119]; intra-Golgi vesicle-mediated transport [GO:0006891] locus:2200246; AT1G67930 Conserved oligomeric Golgi complex subunit Os05g0378900 protein (cDNA clone:J033148I18, full insert sequence),Os05g0378900 protein (Fragment) Q65XH1,A0A0P0WLP7 Q65XH1_ORYSJ,A0A0P0WLP7_ORYSJ Os05g0378900 Os05g0378900 OJ1126_B11.8 OsJ_18352 OSNPB_050378900,Os05g0378900 OSNPB_050378900 ENOG411DZYA Q6NM52 Q6NM52_ARATH 60S ribosome subunit biogenesis protein NIP7 homolog FUNCTION: Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly. {ECO:0000256|PIRNR:PIRNR017190}. 20611 60S ribosome subunit biogenesis protein NIP7 homolog cytosol [GO:0005829]; nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; RNA binding [GO:0003723]; ribosomal large subunit biogenesis [GO:0042273]; ribosome assembly [GO:0042255] locus:2130704; AT4G15770 Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (By similarity) 60S ribosome subunit biogenesis protein NIP7 homolog Q8H478 Q8H478_ORYSJ P0470D12.109 Os07g0670600 OSNPB_070670600 FUNCTION: Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly. {ECO:0000256|PIRNR:PIRNR017190}. ENOG411DZYC Q8GSI6,Q93Z82 Q8GSI6_ARATH,Q93Z82_ARATH At4g19645 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein),At1g31300/T19E23_12 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein) 30894,31882 At4g19645 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein),At1g31300/T19E23_12 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein) integral component of membrane [GO:0016021] locus:504955499;,locus:2197480; AT4G19645,AT1G31300 transmembrane protein 56-B-like Expressed protein (Os03g0666700 protein) (cDNA clone:001-038-A02, full insert sequence) (cDNA clone:006-302-A11, full insert sequence) (cDNA clone:J033080C05, full insert sequence),Os01g0768200 protein (cDNA clone:J033124P21, full insert sequence) Q75HA3,Q0JIZ9 Q75HA3_ORYSJ,Q0JIZ9_ORYSJ LOC_Os03g46410 Os03g0666700 OSJNBa0056E06.9 OSNPB_030666700,Os01g0768200 Os01g0768200 OSNPB_010768200 ENOG411DZYB MAF19.20 Q5BPF2,F4K210,B9DG86,Q45GE3,F4K867 Q5BPF2_ARATH,F4K210_ARATH,B9DG86_ARATH,Q45GE3_ARATH,F4K867_ARATH Myosin heavy chain-like protein,AT5G07890 protein (Myosin heavy chain-like protein) 34480,45317,47554,32921,38484 Myosin heavy chain-like protein,AT5G07890 protein (Myosin heavy chain-like protein) nucleus [GO:0005634] locus:2159411;,locus:2142858; AT5G61200,AT5G07890 NA Os07g0598700 protein A0A0P0X8H6 A0A0P0X8H6_ORYSJ Os07g0598700 OSNPB_070598700 ENOG411DZYE XI-I Q0WPU1,A0A1P8B454,F4JVZ5,F4JVZ4 MYO15_ARATH,A0A1P8B454_ARATH,F4JVZ5_ARATH,F4JVZ4_ARATH Myosin-15 (Myosin XI I) (AtXI-I),Myosin DISRUPTION PHENOTYPE: Impaired nuclear movement. Abnormal nucleus shape with invaginated envelope. {ECO:0000269|PubMed:23973298}. FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Involved in trafficking of Golgi stacks and mitochondria. Plays a role in nuclear shape determination. Drives nuclear movement along actin filaments (PubMed:23973298). As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (PubMed:25759303). {ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:20581304, ECO:0000269|PubMed:21914656, ECO:0000269|PubMed:23973298, ECO:0000269|PubMed:25759303}. ARA:AT4G33200-MONOMER; 173363,173491,171102,169943 Myosin-15 (Myosin XI I) (AtXI-I),Myosin cytoplasm [GO:0005737]; myosin complex [GO:0016459]; nuclear membrane [GO:0031965]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048]; nuclear migration [GO:0007097]; regulation of establishment or maintenance of cell polarity regulating cell shape [GO:2000769],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774] locus:2125929; AT4G33200 DIL domain Os10g0339400 protein (Fragment),Os02g0777700 protein (Fragment),Os10g0395150 protein (Fragment) Q0IYC2,A0A0P0VQ91,A0A0N7KRQ8 Q0IYC2_ORYSJ,A0A0P0VQ91_ORYSJ,A0A0N7KRQ8_ORYSJ Os10g0339400 Os10g0339400 OSNPB_100339400,Os02g0777700 OSNPB_020777700,Os10g0395150 OSNPB_100395150 ENOG411DZYD F2A19.210 Q9M308,A0A1I9LRU2 Q9M308_ARATH,A0A1I9LRU2_ARATH Galactose mutarotase-like superfamily protein (Uncharacterized protein F2A19.210),Galactose mutarotase-like superfamily protein ARA:GQT-382-MONOMER; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Glycolysis / Gluconeogenesis (00010),Metabolic pathways (01100) 35942,35322 Galactose mutarotase-like superfamily protein (Uncharacterized protein F2A19.210),Galactose mutarotase-like superfamily protein carbohydrate binding [GO:0030246]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975] locus:2082842; AT3G61610 glucose-6-phosphate Glucose-6-phosphate 1-epimerase (EC 5.1.3.15),Os05g0569400 protein Q0JKP9,A0A0P0WQ23 Q0JKP9_ORYSJ,A0A0P0WQ23_ORYSJ Os01g0658700 Os01g0658700 OSNPB_010658700,Os05g0569400 OSNPB_050569400 ENOG411DZYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN Os01g0113650 protein,Os01g0113350 protein (Putative receptor serine/threonine kinase PR5K) B9EYW3,Q656X4 B9EYW3_ORYSJ,Q656X4_ORYSJ Os01g0113650 OsJ_00116 OSNPB_010113650,Os01g0113350 OJ1212_B09.2 OSJNBb0032H19.30 OSNPB_010113350 ENOG411DZYF IQ-domain 8 Q9CAI2 Q9CAI2_ARATH At1g72670 (IQ-domain 8) (Uncharacterized protein At1g72670) (Uncharacterized protein F28P22.14) 45894 At1g72670 (IQ-domain 8) (Uncharacterized protein At1g72670) (Uncharacterized protein F28P22.14) locus:2030225; AT1G72670 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411DZYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os02g0493300 protein (Putative ankyrin-like protein),Os02g0492000 protein (Putative ankyrin-like protein) (cDNA clone:002-117-A05, full insert sequence),Os02g0492900 protein (Putative ankyrin-like protein) (cDNA clone:002-171-F07, full insert sequence),Os02g0491900 protein (Fragment),Os02g0492600 protein (Fragment),Os02g0493050 protein (Fragment),Os02g0492000 protein (Fragment) Q6K5N1,Q6K5P5,Q6K5N5,A0A0N7KFB4,A0A0P0VJ89,A0A0P0VJ86,A0A0P0VJ95 Q6K5N1_ORYSJ,Q6K5P5_ORYSJ,Q6K5N5_ORYSJ,A0A0N7KFB4_ORYSJ,A0A0P0VJ89_ORYSJ,A0A0P0VJ86_ORYSJ,A0A0P0VJ95_ORYSJ Os02g0493300 Os02g0493300 OSNPB_020493300 P0579G08.36,P0579G08.17-1 Os02g0492000 OSNPB_020492000,Os02g0492900 OSNPB_020492900 P0579G08.31,Os02g0491900 OSNPB_020491900,Os02g0492600 OSNPB_020492600,Os02g0493050 OSNPB_020493050,Os02g0492000 OSNPB_020492000 ENOG411DZYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os08g0469100 protein (Putative nucleoid DNA-binding protein) Q6ZC29 Q6ZC29_ORYSJ Os08g0469100 Os08g0469100 OSNPB_080469100 P0470B03.35 ENOG411DZYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Melibiase Alpha-galactosidase (EC 3.2.1.22) (Melibiase) A0A0P0X580 A0A0P0X580_ORYSJ Os07g0452100 OSNPB_070452100 ENOG411DZYQ Q9FZ70,A0A1P8ARN3 FDL1_ARATH,A0A1P8ARN3_ARATH F-box/FBD/LRR-repeat protein At1g13570,F-box/RNI-like superfamily protein 47605,33555 F-box/FBD/LRR-repeat protein At1g13570,F-box/RNI-like superfamily protein locus:2010032; AT1G13570 F-box FBD LRR-repeat protein NA NA NA NA NA NA NA ENOG411DZYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B5 (Beta-expansin-5) (OsEXPB5) (OsaEXPb1.19) Q7XT39 EXPB5_ORYSJ EXPB5 Os04g0552200 LOC_Os04g46650 OSJNBa0010H02.8 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DZYS MSH12.19 Q9FNA1 Q9FNA1_ARATH Uncharacterized protein At5g13720 (Uncharacterized protein family (UPF0114)) 28912 Uncharacterized protein At5g13720 (Uncharacterized protein family (UPF0114)) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021] locus:2173239; AT5G13720 UPF0114 domain containing protein expressed Os07g0656700 protein (cDNA, clone: J065166M23, full insert sequence),Os07g0656600 protein (cDNA clone:006-305-F12, full insert sequence) Q8H3C6,Q7EYX5 Q8H3C6_ORYSJ,Q7EYX5_ORYSJ P0047B07.113 Os07g0656700 OsJ_25421 OSNPB_070656700,P0047B07.112 P0018C07.138 Os07g0656600 OSNPB_070656600 ENOG411DZYR GRV2 F4IVL6 GRV2_ARATH DnaJ homolog subfamily C GRV2 (Protein GRAVITROPISM DEFECTIVE 2) (Protein GREEN FLUORESCENT SEED 2) (Protein KATAMARI2) DISRUPTION PHENOTYPE: Reduced shoot phototropism and gravitropism, and impaired embryo growth axis (e.g. between the late torpedo-shaped embryo stage and the walking stick-shaped embryo stage). Abnormal amyloplasts position and sedimentation in endodermal cells. Defect in the organization of endomembranes characterized by aggregated endomembrane structures accompanied by a missorting of storage proteins. {ECO:0000269|PubMed:15466218, ECO:0000269|PubMed:17259264, ECO:0000269|PubMed:17293568}. deformed endosomes and protein storage vacuoles; aggregated endomembranes; swelled and electron-dense extracellular space; defects of growth axis of embryo,green fluorescent seeds,Embryos have enlarged apical cell with respect to wild type. Null: Embryo defective; Knockdown: Dwarf; Abnormal shoot gravitropism-R. Silady-2004 FUNCTION: Required for endosome formation, vacuolar protein sorting and determination of the embryo growth axis. Necessary for the transport of proteins into protein storage vacuoles (PSVs). Participates in vesicle trafficking from the endosome to the central vacuole. Involved in the regulation of shoot phototropism and gravitropism, probably through the positioning of specialized amyloplasts (statoliths) in endodermal cells. {ECO:0000269|PubMed:15466218, ECO:0000269|PubMed:17259264, ECO:0000269|PubMed:17293568, ECO:0000269|PubMed:17971043}. MISCELLANEOUS: 'Katamari' means 'aggregate' in Japanese. R-ATH-6798695; 279073 DnaJ homolog subfamily C GRV2 (Protein GRAVITROPISM DEFECTIVE 2) (Protein GREEN FLUORESCENT SEED 2) (Protein KATAMARI2) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; amyloplast organization [GO:0009660]; cell division [GO:0051301]; early endosome to late endosome transport [GO:0045022]; embryo development ending in seed dormancy [GO:0009793]; embryonic axis specification [GO:0000578]; endocytosis [GO:0006897]; endosome organization [GO:0007032]; late endosome to vacuole transport [GO:0045324]; negative gravitropism [GO:0009959]; phototropism [GO:0009638]; protein targeting to vacuole [GO:0006623]; receptor-mediated endocytosis [GO:0006898]; response to starvation [GO:0042594]; vacuole organization [GO:0007033] DEVELOPMENTAL STAGE: Expressed at the early to middle stages of seed maturation. {ECO:0000269|PubMed:17259264}. TISSUE SPECIFICITY: Constitutively expressed in roots, hypocotyls, leaves (e.g. vascular tissues), stems, flowers (e.g. petals and stigmas), siliques and pollen. {ECO:0000269|PubMed:15466218, ECO:0000269|PubMed:17971043}. locus:2039543; AT2G26890 DnaJ homolog subfamily C Os10g0575200 protein (Fragment) A0A0P0XY58,A0A0N7KS95,A0A0P0XYL0 A0A0P0XY58_ORYSJ,A0A0N7KS95_ORYSJ,A0A0P0XYL0_ORYSJ Os10g0575200 OSNPB_100575200 ENOG411DZYU F4I4Y5,F4I4Y6,F4JCC9 F4I4Y5_ARATH,F4I4Y6_ARATH,F4JCC9_ARATH p-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein 111042,113284,111362 p-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787],nucleus [GO:0005634]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2031005;,locus:2091151; AT1G50140,AT3G19740 ATPase family associated with various cellular activities (AAA) Os06g0225900 protein (Fragment),Os02g0749150 protein (Fragment) A0A0P0WUI4,A0A0P0VPG0 A0A0P0WUI4_ORYSJ,A0A0P0VPG0_ORYSJ Os06g0225900 OSNPB_060225900,Os02g0749150 OSNPB_020749150 ENOG411DZYT Q682E0 Q682E0_ARATH Catalytic/ hydrolase (mRNA, clone: RAFL21-86-C08) 38163 Catalytic/ hydrolase (mRNA, clone: RAFL21-86-C08) chloroplast [GO:0009507]; cytosol [GO:0005829]; carboxy-lyase activity [GO:0016831]; hydrolase activity [GO:0016787] locus:2062425; AT2G35450 Amidohydrolase Os04g0391900 protein (Fragment) A0A0P0W9I9,A0A0P0W9K7 A0A0P0W9I9_ORYSJ,A0A0P0W9K7_ORYSJ Os04g0391900 OSNPB_040391900 ENOG411DZYW GFS10 Q9SZT4 CSCLE_ARATH CSC1-like protein At4g35870 DISRUPTION PHENOTYPE: Accumulated 12S globulin precursors in seeds. {ECO:0000269|PubMed:17293568}. green fluorescent seeds FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. R-ATH-6798695; 92585 CSC1-like protein At4g35870 integral component of membrane [GO:0016021]; intracellular [GO:0005622]; ion transport [GO:0006811]; protein targeting to vacuole [GO:0006623] locus:2125394; AT4G35870 Domain of unknown function DUF221 Expressed protein (Os03g0137400 protein) (cDNA clone:J013108G06, full insert sequence) Q10S28 Q10S28_ORYSJ Os03g0137400 LOC_Os03g04450 Os03g0137400 OSNPB_030137400 ENOG411DZYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 Os05g0280000 protein Q75IH4 Q75IH4_ORYSJ Os05g0280000 OsJ_17897 OSNPB_050280000 P0048F12.6 ENOG411E1RE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os11g0541200 protein,Expressed protein (Os11g0540600 protein),Os11g0541300 protein,Os11g0541600 protein,Os11g0540800 protein (Fragment),Os11g0540900 protein A3A6E7,Q0ISB3,Q2R317,A0A0P0Y3J8,A0A0P0Y388,A0A0P0Y3E5 A3A6E7_ORYSJ,Q0ISB3_ORYSJ,Q2R317_ORYSJ,A0A0P0Y3J8_ORYSJ,A0A0P0Y388_ORYSJ,A0A0P0Y3E5_ORYSJ Os11g0541200 OsJ_06573 OSNPB_110541200,Os11g0540600 LOC_Os11g33394 Os11g0540600 OSNPB_110540600,Os11g0541300 LOC_Os11g33950 OsJ_06572 OSNPB_110541300,Os11g0541600 OSNPB_110541600,Os11g0540800 OSNPB_110540800,Os11g0540900 OSNPB_110540900 ENOG411E1RG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Transcription factor BHLH089 (Basic helix-loop-helix protein 89) (OsbHLH089) (bHLH transcription factor bHLH089),Transcription factor BHLH094 (Basic helix-loop-helix protein 94) (OsbHLH094) (bHLH transcription factor bHLH094) Q84T08,Q69WS3 BH089_ORYSJ,BH094_ORYSJ BHLH089 Os03g0802900 LOC_Os03g58830 OSJNBa0087C10.10,BHLH094 Os07g0193800 LOC_Os07g09590 OJ1118_E12.15 FUNCTION: Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.,FUNCTION: Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. ENOG411E1RH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dual specificity phosphatase catalytic domain Os05g0524200 protein,Os01g0739200 protein (Putative PTEN-like phosphatase) (cDNA clone:J033022G13, full insert sequence) Q0DGM1,Q5JNL3 Q0DGM1_ORYSJ,Q5JNL3_ORYSJ Os05g0524200 Os05g0524200 OsJ_19260 OSNPB_050524200,Os01g0739200 Os01g0739200 OsJ_03393 OSNPB_010739200 P0638D12.17 ENOG411ECVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase family NA NA NA NA NA NA NA ENOG411ECVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411E8ZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQ98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubisco LSMT substrate-binding NA NA NA NA NA NA NA ENOG411DQ99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411DQ92 UMAMIT23 F4HVM3,Q4PT23,A0A1P8AWW2 WTR10_ARATH,WTR6_ARATH,A0A1P8AWW2_ARATH WAT1-related protein At1g68170,WAT1-related protein At1g25270,WAT1-related protein 38797,38576,40162 WAT1-related protein At1g68170,WAT1-related protein At1g25270,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2199327;,locus:2032960; AT1G68170,AT1G25270 auxin-induced protein 5NG4-like WAT1-related protein Q7XTL1 Q7XTL1_ORYSJ Os04g0687800 Os04g0687800 OsJ_16712 OSJNBa0070M12.19 OSNPB_040687800 ENOG411DQ93 RTNLB18,RTNLB17 Q8LDS3,Q6DR04,A0A1P8AXL5 RTNLR_ARATH,RTNLQ_ARATH,A0A1P8AXL5_ARATH Reticulon-like protein B18 (AtRTNLB18),Reticulon-like protein B17 (AtRTNLB17),Reticulon-like protein 51422,48397,47155 Reticulon-like protein B18 (AtRTNLB18),Reticulon-like protein B17 (AtRTNLB17),Reticulon-like protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2121417;,locus:2046021; AT4G28430,AT2G20590 Reticulon-like protein Reticulon-like protein Q6K5U2 Q6K5U2_ORYSJ Os02g0302900 Os02g0302900 OSNPB_020302900 P0477B05.17 ENOG411DQ90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Protein disulfide isomerase-like 5-2 (OsPDIL5-2) (Protein disulfide isomerase-like 7-1) (OsPDIL7-1),Protein disulfide isomerase-like 5-3 (OsPDIL5-3) (Protein disulfide isomerase-like 7-2) (OsPDIL7-2),Os02g0550300 protein Q0JD42,Q0E0I1,A0A0P0VKA0 PDI52_ORYSJ,PDI53_ORYSJ,A0A0P0VKA0_ORYSJ PDIL5-2 PDIL7-1 Os04g0432500 LOC_Os04g35290 OSJNBa0084A10.17,PDIL5-3 PDIL7-2 Os02g0550300 LOC_Os02g34530 OsJ_07093,Os02g0550300 OSNPB_020550300 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411DQ91 ABCG14 Q9C6W5 AB14G_ARATH ABC transporter G family member 14 (ABC transporter ABCG.14) (AtABCG14) (White-brown complex homolog protein 14) (AtWBC14) 72619 ABC transporter G family member 14 (ABC transporter ABCG.14) (AtABCG14) (White-brown complex homolog protein 14) (AtWBC14) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; cotyledon vascular tissue pattern formation [GO:0010588]; stem vascular tissue pattern formation [GO:0010222] locus:2028656; AT1G31770 ABC transporter G family member Os08g0167000 protein (Putative ABC transporter AbcG1) Q6YYM2 Q6YYM2_ORYSJ Os08g0167000 OJ1449_C01.55 OSNPB_080167000 P0462E11.2 ENOG411DQ96 SHR Q9SZF7 SHR_ARATH Protein SHORT-ROOT (AtSHR) (GRAS family protein 26) (AtGRAS-26) (Protein SHOOT GRAVITROPISM 7) Reduction of the width of the stele measured at 100 μm above the QC (where the early differentiation of the phloem and the xylem starts in wildtype) and reduction of the number of stele cell files visible on median optical sections in the same region.,Significant reduction in the number of stele initials in 4-d-old shr-2 seedlings compared to wild-type plants.,The shr-2 mutation strongly perturbs the specification of the stele initials as well as the patterning of the stele tissues and notably the phloem and procambium tissues. Abnormal root growth-P. Benfey-2000 FUNCTION: Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. MISCELLANEOUS: Moves via plasmodesmata from the stele into the adjacent cell layer where it locates in the nucleus to controls SCR transcription and endodermis specification. Intact microtubules are required for cell-to-cell trafficking of SHR (PubMed:23294290). This intercellular movement is dependent upon the endosome localized protein SIEL (PubMed:21924907). It is necessary for normal patterning of the root (PubMed:19000160). {ECO:0000269|PubMed:19000160, ECO:0000269|PubMed:21924907, ECO:0000269|PubMed:23294290}. 59462 Protein SHORT-ROOT (AtSHR) (GRAS family protein 26) (AtGRAS-26) (Protein SHOOT GRAVITROPISM 7) early endosome [GO:0005769]; late endosome [GO:0005770]; nucleus [GO:0005634]; recycling endosome [GO:0055037]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; asymmetric cell division [GO:0008356]; iron ion homeostasis [GO:0055072]; leaf development [GO:0048366]; negative regulation of mitotic cell cycle [GO:0045930]; radial pattern formation [GO:0009956]; regulation of hormone metabolic process [GO:0032350]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the procambium during embryogenesis. {ECO:0000269|PubMed:10850497}. TISSUE SPECIFICITY: Expressed in the stele and the quiescent center. Not detected in the ground tissue cell lineage. The SHR protein moves from the stele to a single layer of adjacent cells, where it enters the nucleus. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:11565032, ECO:0000269|PubMed:15142972, ECO:0000269|PubMed:15314023}. locus:2120106; AT4G37650 Transcription factor Protein SHORT-ROOT 2 (OsSHR2),Protein SHORT-ROOT 1 (OsSHR1) Q75I13,Q8H2X8 SHR2_ORYSJ,SHR1_ORYSJ SHR2 Os03g0433200 LOC_Os03g31880 OsJ_010915 OSJNBb0031F05.14,SHR1 Os07g0586900 LOC_Os07g39820 OJ1047_C01.1 OJ1113_E01.116 OsJ_24926 FUNCTION: Putative transcription factor involved in asymmetric cell division. {ECO:0000250}.,FUNCTION: Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}. ENOG411DQ97 RING1A,RING1B Q9FKW0,Q0WX00,A0A1P8AWT6,A0A1P8AWX4,A0A1P8BEC3,F4I2H5,F4I2H4,F4HWK6,F4K8U4 RNG1A_ARATH,RNG1B_ARATH,A0A1P8AWT6_ARATH,A0A1P8AWX4_ARATH,A0A1P8BEC3_ARATH,F4I2H5_ARATH,F4I2H4_ARATH,F4HWK6_ARATH,F4K8U4_ARATH Putative E3 ubiquitin-protein ligase RING1a (EC 2.3.2.27) (Polycomb complex protein RING1a) (Protein RING1a) (AtRING1a) (RING-type E3 ubiquitin transferase RING1a) (Ring finger protein 434),Putative E3 ubiquitin-protein ligase RING1b (EC 2.3.2.27) (Polycomb complex protein RING1b) (Protein RING1b) (AtRING1b) (RING-type E3 ubiquitin transferase RING1b) (Ring finger protein 5),RING 1B,RING 1A,E3 ubiquitin-protein ligase DISRUPTION PHENOTYPE: Normal phenotype. Drastic growth defects like ectopic meristem formation and sterility when associated with the disruption of RING1B. {ECO:0000269|PubMed:19097900}.,DISRUPTION PHENOTYPE: Normal phenotype. Drastic growth defects like ectopic meristem formation and sterility when associated with the disruption of RING1A. {ECO:0000269|PubMed:19097900}. Plieotrophic defects. Leaves may be lobed downward curving or make ectopic meristems. The SAM is enlarged and phyllotaxy is abnormal and the shoot apex may terminate in a cluster of flowers with extra floral organs.Occasional homeotic conversion of petals to stamens.,lants are extremely small with a reduced number of leaves leaves are sessile and the inflorescences are completely arrested. Cotyledons are relatively well expanded.Enhanced de-repression of KNOX gene expression.,Plants are extremely small with a reduced number of leaves leaves are sessile and the inflorescences are completely arrested.Enhanced de-repression of KNOX gene expression. FUNCTION: Putative E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A (H2AK119ub), thereby playing a central role in histone code and gene regulation. {ECO:0000250}.; FUNCTION: As part of the PRC1-like complex, repress class I KNOX gene expression. PcG PRC1 complex maintains the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility. {ECO:0000269|PubMed:19097900}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 59198,51975,41956,38981,45169,52161,52758,31292,59541 Putative E3 ubiquitin-protein ligase RING1a (EC 2.3.2.27) (Polycomb complex protein RING1a) (Protein RING1a) (AtRING1a) (RING-type E3 ubiquitin transferase RING1a) (Ring finger protein 434),Putative E3 ubiquitin-protein ligase RING1b (EC 2.3.2.27) (Polycomb complex protein RING1b) (Protein RING1b) (AtRING1b) (RING-type E3 ubiquitin transferase RING1b) (Ring finger protein 5),RING 1B,RING 1A,E3 ubiquitin-protein ligase nucleus [GO:0005634]; PRC1 complex [GO:0035102]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; cell fate determination [GO:0001709]; covalent chromatin modification [GO:0016569]; maintenance of floral meristem identity [GO:0010076]; maintenance of inflorescence meristem identity [GO:0010077]; maintenance of shoot apical meristem identity [GO:0010492]; negative regulation of gene expression, epigenetic [GO:0045814]; negative regulation of transcription, DNA-templated [GO:0045892]; protein ubiquitination [GO:0016567]; transcription, DNA-templated [GO:0006351],PRC1 complex [GO:0035102]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; cell fate determination [GO:0001709]; covalent chromatin modification [GO:0016569]; maintenance of floral meristem identity [GO:0010076]; maintenance of inflorescence meristem identity [GO:0010077]; maintenance of shoot apical meristem identity [GO:0010492]; negative regulation of transcription, DNA-templated [GO:0045892]; protein ubiquitination [GO:0016567]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; negative regulation of gene expression, epigenetic [GO:0045814],ligase activity [GO:0016874] locus:2024152;,locus:2825930;,locus:2158705; AT5G44280,AT1G03770,AT1G28327 E3 ubiquitin-protein ligase Os01g0796700 protein (Putative ring finger protein 1) (cDNA clone:J013119G16, full insert sequence),Os11g0578200 protein,Os05g0497600 protein Q5ZBT1,A0A0P0Y3N3,A0A0P0WPB2 Q5ZBT1_ORYSJ,A0A0P0Y3N3_ORYSJ,A0A0P0WPB2_ORYSJ Os01g0796700 OsJ_03751 OSNPB_010796700 P0699H05.31,Os11g0578200 OSNPB_110578200,Os05g0497600 OSNPB_050497600 ENOG411DQ94 WIT1 Q8L7E5 WIT1_ARATH WPP domain-interacting tail-anchored protein 1 FUNCTION: Together with WIT2, required for the nuclear envelope docking of RANGAP proteins in root tips. {ECO:0000269|PubMed:18591351}. 79048 WPP domain-interacting tail-anchored protein 1 integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18591351}. locus:2148057; AT5G11390 WPP domain-interacting tail-anchored protein Os05g0241000 protein (cDNA clone:J013149N06, full insert sequence) Q60EV1 Q60EV1_ORYSJ Os05g0241000 Os05g0241000 OJ1115_B04.8 OsJ_17757 OSNPB_050241000 ENOG411DQ95 TADA Q9S7I0 TADA_ARATH tRNA(adenine(34)) deaminase, chloroplastic (TADA) (EC 3.5.4.33) (tRNA adenosine deaminase arginine) (tRNA arginine adenosine deaminase) DISRUPTION PHENOTYPE: Loss of cp-tRNA editing, decreased chloroplast translation and impaired photosynthesis. {ECO:0000269|PubMed:19602623}. Delayed growth; Pale green leaves; Reduced fertility-J. Gualberto-2009 FUNCTION: Deaminates adenosines to inosines in tRNA-Arg(ACG). Exclusively involved in A-to-I editing of the prokaryote-type chloroplast-tRNA and not involved in C-to-U editing. {ECO:0000269|PubMed:19460869, ECO:0000269|PubMed:19602623}. MISCELLANEOUS: Since the absence of A-to-I editing is compatible with plant survival, a limitted two out of three codon recognition occurs in chloroplasts, though this mechanism is less efficient than wobble pairing. {ECO:0000305|PubMed:19602623}. 3.5.4.33; 3.5.4.33 146564 tRNA(adenine(34)) deaminase, chloroplastic (TADA) (EC 3.5.4.33) (tRNA adenosine deaminase arginine) (tRNA arginine adenosine deaminase) chloroplast [GO:0009507]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; tRNA-specific adenosine deaminase activity [GO:0008251]; tRNA wobble adenosine to inosine editing [GO:0002100] locus:2012408; AT1G68720 deaminase Os06g0489500 protein (Putative cytosine deaminase) Q67VW4 Q67VW4_ORYSJ Os06g0489500 Os06g0489500 OSNPB_060489500 P0583E12.28 ENOG411DQ9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein Os03g0802100 protein (Fragment) A0A0P0W4J9 A0A0P0W4J9_ORYSJ Os03g0802100 OSNPB_030802100 ENOG411DQ9K ORTH2,ORTH3,ORTH1,ORTHL,ORTH4,ORTH5,VIM5 Q8VYZ0,Q9FVS2,Q9FKA7,Q681I0,Q9C8E1,Q680I0,A0A1P8B4U7,A0A1P8B4V7,A0A1P8AQ73,A0A1P8B4T9 ORTH2_ARATH,ORTH3_ARATH,ORTH1_ARATH,ORTHL_ARATH,ORTH4_ARATH,ORTH5_ARATH,A0A1P8B4U7_ARATH,A0A1P8B4V7_ARATH,A0A1P8AQ73_ARATH,A0A1P8B4T9_ARATH E3 ubiquitin-protein ligase ORTHRUS 2 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 1) (RING-type E3 ubiquitin transferase ORTHRUS 2),E3 ubiquitin-protein ligase ORTHRUS 3 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 5) (RING-type E3 ubiquitin transferase ORTHRUS 3),E3 ubiquitin-protein ligase ORTHRUS 1 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 3) (RING-type E3 ubiquitin transferase ORTHRUS 1),E3 ubiquitin-protein ligase ORTHRUS-LIKE 1 (ORTH-LIKE 1) (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 6) (RING-type E3 ubiquitin transferase ORTHRUS-LIKE 1),Putative E3 ubiquitin-protein ligase ORTHRUS 4 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 4) (RING-type E3 ubiquitin transferase ORTHRUS 4),E3 ubiquitin-protein ligase ORTHRUS 5 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 2) (RING-type E3 ubiquitin transferase ORTHRUS 5),ORTHRUS-like protein,Zinc finger (C3HC4-type RING finger) family protein DISRUPTION PHENOTYPE: Centromere DNA hypomethylation and centromeric heterochromatin decondensation in interphase. Decreased DNA methylation primarily at CpG sites in genic regions, as well as repeated sequences in heterochromatic regions. Released transcriptional silencing at heterochromatin regions. Ectopic CpHpH methylation in the 5S rRNA genes against a background of CpG hypomethylation. {ECO:0000269|PubMed:18704160}.,DISRUPTION PHENOTYPE: Decreased DNA methylation primarily at CpG sites in genic regions, as well as repeated sequences in heterochromatic regions. Released transcriptional silencing at heterochromatin regions. Ectopic CpHpH methylation in the 5S rRNA genes against a background of CpG hypomethylation. {ECO:0000269|PubMed:18704160}. Increased HpaII cleavage of the 180-bp centromere repeats. This reflects hypomethylation of the centromere. Centromere repeats in interphase nuclei are decondensed relative to wild type.,No centromere repeat hypomethylation phenotype. Centromeres decondense during interphase; Increased cytosine methylation-E. Richards-2007 FUNCTION: E3 ubiquitin-protein ligase. Participates in CpG methylation-dependent transcriptional regulation and epigenetic transcriptional silencing. Mediates ubiquitination with the E2 ubiquitin-conjugating enzyme UBC11. Promotes methylation-mediated gene silencing leading, for example, to early flowering. Associates with methylated DNA, and can bind to CpG, CpNpG, and CpNpN DNA motifs, with a strong preference for methylated forms, and with highest affinity for CpG substrate. Probably acts at the DNA methylation?histone interface to maintain centromeric heterochromatin. {ECO:0000269|PubMed:17239600, ECO:0000269|PubMed:17242155, ECO:0000269|PubMed:18643997, ECO:0000269|PubMed:18704160}.,FUNCTION: E3 ubiquitin-protein ligase. May participate in CpG methylation-dependent transcriptional regulation (By similarity). {ECO:0000250}.,FUNCTION: E3 ubiquitin-protein ligase. Participates in CpG methylation-dependent transcriptional regulation and epigenetic transcriptional silencing. Mediates ubiquitination with the E2 ubiquitin-conjugating enzymes UBC11, UBC8 and UBC8 homologs (e.g. UBC10, UBC11, UBC28 and UBC29) but not with UBC27, UBC30, UBC32, UBC34 and UBC36. Promotes methylation-mediated gene silencing leading, for example, to early flowering. Can bind to CpG, CpNpG, and CpNpN DNA motifs, with a strong preference for methylated forms, and with highest affinity for CpG substrate. {ECO:0000269|PubMed:17239600, ECO:0000269|PubMed:18643997, ECO:0000269|PubMed:18704160}.,FUNCTION: E3 ubiquitin-protein ligase. May participate in methylation-dependent transcriptional regulation. Mediates ubiquitination with the E2 ubiquitin-conjugating enzyme UBC11. {ECO:0000269|PubMed:18643997}.,FUNCTION: E3 ubiquitin-protein ligase. Participates in CpG methylation-dependent transcriptional regulation and epigenetic transcriptional silencing. Mediates ubiquitination with the E2 ubiquitin-conjugating enzyme UBC11. {ECO:0000269|PubMed:18643997, ECO:0000269|PubMed:18704160}. MISCELLANEOUS: ORTH2 is missing in cv. Bor-4 that exhibit a centromere repeat hypomethylation phenotype. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 71467,73364,68299,52308,68663,68719,41192,47483,73787,44254 E3 ubiquitin-protein ligase ORTHRUS 2 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 1) (RING-type E3 ubiquitin transferase ORTHRUS 2),E3 ubiquitin-protein ligase ORTHRUS 3 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 5) (RING-type E3 ubiquitin transferase ORTHRUS 3),E3 ubiquitin-protein ligase ORTHRUS 1 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 3) (RING-type E3 ubiquitin transferase ORTHRUS 1),E3 ubiquitin-protein ligase ORTHRUS-LIKE 1 (ORTH-LIKE 1) (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 6) (RING-type E3 ubiquitin transferase ORTHRUS-LIKE 1),Putative E3 ubiquitin-protein ligase ORTHRUS 4 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 4) (RING-type E3 ubiquitin transferase ORTHRUS 4),E3 ubiquitin-protein ligase ORTHRUS 5 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 2) (RING-type E3 ubiquitin transferase ORTHRUS 5),ORTHRUS-like protein,Zinc finger (C3HC4-type RING finger) family protein chromocenter [GO:0010369]; nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; double-stranded methylated DNA binding [GO:0010385]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; methyl-CpG binding [GO:0008327]; methyl-CpNpG binding [GO:0010428]; methyl-CpNpN binding [GO:0010429]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; cell division [GO:0051301]; covalent chromatin modification [GO:0016569]; DNA methylation on cytosine [GO:0032776]; DNA methylation on cytosine within a CG sequence [GO:0010424]; maintenance of DNA methylation [GO:0010216]; pericentric heterochromatin assembly [GO:0031508]; positive regulation of methylation-dependent chromatin silencing [GO:0090309]; protein ubiquitination [GO:0016567],nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; methyl-CpG binding [GO:0008327]; methyl-CpNpG binding [GO:0010428]; methyl-CpNpN binding [GO:0010429]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; covalent chromatin modification [GO:0016569]; DNA methylation on cytosine within a CG sequence [GO:0010424]; maintenance of DNA methylation [GO:0010216]; protein ubiquitination [GO:0016567]; regulation of methylation-dependent chromatin silencing [GO:0090308],nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; methyl-CpG binding [GO:0008327]; methyl-CpNpG binding [GO:0010428]; methyl-CpNpN binding [GO:0010429]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; covalent chromatin modification [GO:0016569]; DNA methylation on cytosine [GO:0032776]; DNA methylation on cytosine within a CG sequence [GO:0010424]; maintenance of DNA methylation [GO:0010216]; positive regulation of methylation-dependent chromatin silencing [GO:0090309]; protein ubiquitination [GO:0016567]; vegetative to reproductive phase transition of meristem [GO:0010228],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; methyl-CpG binding [GO:0008327]; methyl-CpNpG binding [GO:0010428]; methyl-CpNpN binding [GO:0010429]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; covalent chromatin modification [GO:0016569]; DNA methylation on cytosine within a CG sequence [GO:0010424]; maintenance of DNA methylation [GO:0010216]; protein ubiquitination [GO:0016567]; regulation of methylation-dependent chromatin silencing [GO:0090308],nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; methyl-CpG binding [GO:0008327]; methyl-CpNpG binding [GO:0010428]; methyl-CpNpN binding [GO:0010429]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; covalent chromatin modification [GO:0016569]; maintenance of DNA methylation [GO:0010216]; positive regulation of methylation-dependent chromatin silencing [GO:0090309]; protein ubiquitination [GO:0016567],nucleus [GO:0005634]; histone binding [GO:0042393],nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Mostly expressed in inflorescence and, to a lower extent, in leaves. {ECO:0000269|PubMed:18704160}.,TISSUE SPECIFICITY: Expressed in inflorescences and leaves. {ECO:0000269|PubMed:18704160}.,TISSUE SPECIFICITY: Expressed in inflorescences. {ECO:0000269|PubMed:18704160}. locus:2009420;,locus:2009425;,locus:2164835;,locus:2138591;,locus:2013800;,locus:2013840; AT1G57820,AT1G57800,AT5G39550,AT4G08590,AT1G66040,AT1G66050 E3 ubiquitin-protein ligase ORTHRUS Os05g0102600 protein (Putative zinc finger protein),Os04g0289800 protein Q9FW25,A0A0P0W864 Q9FW25_ORYSJ,A0A0P0W864_ORYSJ Os05g0102600 Os05g0102600 OsJ_16783 OSNPB_050102600 P0036D10.17 P0668H12.2,Os04g0289800 OSNPB_040289800 ENOG411DQ9H A0A1P8ATB1,F4IAQ4 A0A1P8ATB1_ARATH,F4IAQ4_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein 31878,31060 Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity [GO:0008080] locus:504956309; AT1G18335 Acetyltransferase (GNAT) family Os05g0387800 protein (Putative N-acetyltransferase),GCN5-related N-acetyltransferase protein-like (Os02g0772300 protein) (cDNA clone:J023099E03, full insert sequence) Q60E62,Q6ZHF5 Q60E62_ORYSJ,Q6ZHF5_ORYSJ Os05g0387800 Os05g0387800 OSJNBa0073E05.14 OSNPB_050387800,Os02g0772300 Os02g0772300 OJ1611_C08.13 OSNPB_020772300 ENOG411DQ9I Q9AST9,A0A1P8ATD8 Q9AST9_ARATH,A0A1P8ATD8_ARATH At1g73110/F3N23_39 (Uncharacterized protein At1g73110/F3N23_39) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein 48325,38116 At1g73110/F3N23_39 (Uncharacterized protein At1g73110/F3N23_39) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2032687; AT1G73110 Ribulose bisphosphate carboxylase oxygenase activase OSJNBa0011F23.7 protein (Os04g0658300 protein) Q7XN85 Q7XN85_ORYSJ Os04g0658300 Os04g0658300 OSJNBa0011F23.7 OSNPB_040658300 ENOG411DQ9N RD19D,RD19C Q8VYS0,Q9SUL1,A0A1I9LTT3 RD19D_ARATH,RD19C_ARATH,A0A1I9LTT3_ARATH Probable cysteine protease RD19D (EC 3.4.22.-),Probable cysteine protease RD19C (EC 3.4.22.-) (RD19-like protein 2),Papain family cysteine protease FUNCTION: Probable thiol protease. {ECO:0000250|UniProtKB:P43297}. R-ATH-2132295; 3.4.22.- 40133,41264,30657 Probable cysteine protease RD19D (EC 3.4.22.-),Probable cysteine protease RD19C (EC 3.4.22.-) (RD19-like protein 2),Papain family cysteine protease extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603],extracellular space [GO:0005615]; lysosome [GO:0005764]; lytic vacuole [GO:0000323]; vacuole [GO:0005773]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603],cysteine-type peptidase activity [GO:0008234] locus:2082687;,locus:2130180; AT3G54940,AT4G16190 cysteine proteinase Os02g0469600 protein (Putative cysteine proteinase 1) (cDNA clone:J013002F17, full insert sequence) (cDNA clone:J013063O07, full insert sequence) (cDNA clone:J023020I09, full insert sequence),Os04g0311400 protein (Fragment),Os07g0480900 protein (Putative cysteine proteinase) (cDNA clone:001-115-C06, full insert sequence) Q6K7A3,Q0JE83,Q8GVR2,A0A0P0W993 Q6K7A3_ORYSJ,Q0JE83_ORYSJ,Q8GVR2_ORYSJ,A0A0P0W993_ORYSJ Os02g0469600 OJ1371_D04.6 OsJ_06681 OSNPB_020469600,Os04g0311400 Os04g0311400 OSNPB_040311400,P0434A03.135 Os07g0480900 OSNPB_070480900,Os04g0311400 OSNPB_040311400 ENOG411DQ9M CERK,ACD5 Q6USK2,A0A1P8BEG7 CERK_ARATH,A0A1P8BEG7_ARATH Ceramide kinase (AtCERK) (EC 2.7.1.138) (Protein ACCELERATED CELL DEATH 5),Diacylglycerol kinase family protein DISRUPTION PHENOTYPE: Enhanced apoptotic-like cell death late in development. {ECO:0000269|PubMed:14563678}. FUNCTION: Catalyzes specifically the phosphorylation of ceramide to form ceramide 1-phosphate. Possesses high activity on ceramide analogs (C6, C8 synthetic ceramides) and lower activity on C6 and C8 dihydroceramides. Has weak activity on natural ceramides (a mixture of ceramides from bovine brain) and the synthetic substrate C2 ceramide. Has very poor activity on diacylglycerol and sphingosine. Ceramide is a critical sphingolipid metabolite that induces programmed cell death (PCD) in plants and ceramide-1-phosphate has a PCD suppressive effect. Thus, ceramide phosphorylation plays a role in the modulation of PCD and CERK activity is crucial for the maintenance of cell viability. {ECO:0000269|PubMed:14563678}. ARA:AT5G51290-MONOMER;MetaCyc:AT5G51290-MONOMER; R-ATH-1660662; 2.7.1.138 68462,52472 Ceramide kinase (AtCERK) (EC 2.7.1.138) (Protein ACCELERATED CELL DEATH 5),Diacylglycerol kinase family protein ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; ceramide kinase activity [GO:0001729]; dihydroceramide kinase activity [GO:0102773]; NAD+ kinase activity [GO:0003951]; cell death [GO:0008219]; ceramide metabolic process [GO:0006672]; regulation of programmed cell death [GO:0043067],NAD+ kinase activity [GO:0003951] locus:2176202; AT5G51290 ceramide Ceramide kinase (OsCERK) (EC 2.7.1.138),Os02g0656200 protein C0LT23,A0A0P0VML6 CERK_ORYSJ,A0A0P0VML6_ORYSJ CERK Os02g0656200 LOC_Os02g43906/LOC_Os02g43912 OJ1003_B06.39 P0519E06.23,Os02g0656200 OSNPB_020656200 FUNCTION: Catalyzes specifically the phosphorylation of ceramide to form ceramide 1-phosphate. Possesses activity on ceramide analog (C6 synthetic ceramide) in vitro. Ceramide is a critical sphingolipid metabolite that induces programmed cell death (PCD) in plants and ceramide-1-phosphate has a PCD suppressive effect. Thus, ceramide phosphorylation plays a role in the modulation of PCD and CERK activity is crucial for the maintenance of cell viability. {ECO:0000269|PubMed:21483860}. MISCELLANEOUS: Overexpression of CERK in the Arabidopsis mutant acd5 restores wild-type phenotype. {ECO:0000305|PubMed:21483860}. ENOG411DQ9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Peptidase M20 domain containing 1 Os03g0128800 protein Q0DVI1,A0A0P0VSL6 Q0DVI1_ORYSJ,A0A0P0VSL6_ORYSJ Os03g0128800 OSNPB_030128800 ENOG411DQ9C Q9T069 Q9T069_ARATH Transmembrane protein (Uncharacterized protein AT4g37820) (Uncharacterized protein At4g37820/T28I19_100) 59135 Transmembrane protein (Uncharacterized protein AT4g37820) (Uncharacterized protein At4g37820/T28I19_100) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:2137544; AT4G37820 NA Expressed protein (Os03g0726400 protein) (cDNA clone:J013158A20, full insert sequence) Q75GI7 Q75GI7_ORYSJ Os03g0726400 OSJNBb0122C16.13 LOC_Os03g51640 Os03g0726400 OsJ_12423 OSJNBa0013A09.10 OSNPB_030726400 ENOG411DQ9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0666300 protein A0A0P0W1V1 A0A0P0W1V1_ORYSJ Os03g0666300 OSNPB_030666300 ENOG411DQ9F MOP10.5 Q9FFG4 Q9FFG4_ARATH At5g05510 (Mad3/BUB1 homology region 1) 54228 At5g05510 (Mad3/BUB1 homology region 1) condensed nuclear chromosome kinetochore [GO:0000778]; protein kinase activity [GO:0004672]; meiotic sister chromatid cohesion, centromeric [GO:0051754]; mitotic spindle assembly checkpoint [GO:0007094] locus:2169692; AT5G05510 Mad3_BUB1_I Os12g0125300 protein (Protein kinase, putative, expressed),Os11g0128700 protein Q2QYB8,A0A0N7KSD3 Q2QYB8_ORYSJ,A0A0N7KSD3_ORYSJ LOC_Os12g03180 Os12g0125300 OsJ_35069 OSNPB_120125300,Os11g0128700 OSNPB_110128700 ENOG411DQ9G Q9FX08 P2C12_ARATH Probable protein phosphatase 2C 12 (AtPP2C12) (EC 3.1.3.16) 3.1.3.16 46422 Probable protein phosphatase 2C 12 (AtPP2C12) (EC 3.1.3.16) cytosol [GO:0005829]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2203766; AT1G47380 phosphatase 2C Os03g0395100 protein A0A0P0VYA4 A0A0P0VYA4_ORYSJ Os03g0395100 OSNPB_030395100 ENOG411DQ9D Q0WPS2,Q8GWI5 B561M_ARATH,Y4826_ARATH Cytochrome b561 domain-containing protein At4g18260 (Protein b561A.tha13),Uncharacterized protein At4g18257 32649,29115 Cytochrome b561 domain-containing protein At4g18260 (Protein b561A.tha13),Uncharacterized protein At4g18257 integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] AT4G18260,AT4G18257 Inherit from KOG: Ferric-chelate reductase Cytochrome B561-like (Os01g0666500 protein) (cDNA clone:J033102P10, full insert sequence) Q5QLQ8 Q5QLQ8_ORYSJ Os01g0666500 Os01g0666500 OsJ_02935 OSJNBb0063G05.6 OSNPB_010666500 ENOG411DQ9E Q67YL8,A0A1P8B209,A0A1P8B231,F4IKG5 Q67YL8_ARATH,A0A1P8B209_ARATH,A0A1P8B231_ARATH,F4IKG5_ARATH Myb-like protein X (mRNA, clone: RAFL24-22-E06),Uncharacterized protein 52861,79570,77920,82005 Myb-like protein X (mRNA, clone: RAFL24-22-E06),Uncharacterized protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802] locus:2134208;,locus:504955937; AT4G33740,AT2G22795 NA Dentin sialophosphoprotein-like (Os06g0554300 protein) (cDNA clone:J023042K04, full insert sequence) Q5Z9C3 Q5Z9C3_ORYSJ Os06g0554300 Os06g0554300 OsJ_21671 OSNPB_060554300 P0427B07.44 ENOG411DQ9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potassium transporter Probable potassium transporter 17 (OsHAK17),Probable potassium transporter 4 (OsHAK4),Potassium transporter (Fragment) Q67UC7,Q6YSA9,A0A0P0XN78 HAK17_ORYSJ,HAK4_ORYSJ,A0A0P0XN78_ORYSJ HAK17 Os09g0448200 LOC_Os09g27580 OJ1596_C06.35-1 OJ1596_C06.35-2 OsJ_29574 P0047B10.17-1 P0047B10.17-2,HAK4 Os08g0466200 LOC_Os08g36340 OsJ_27614 P0104B02.21,Os09g0448200 OSNPB_090448200 FUNCTION: High-affinity potassium transporter. {ECO:0000250}.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. ENOG411DQ9X IQD6 O64852 O64852_ARATH At2g26180 (IQ-domain 6) (Putative SF16 protein (Helianthus annuus)) 46890 At2g26180 (IQ-domain 6) (Putative SF16 protein (Helianthus annuus)) locus:2057459; AT2G26180 IQ Os01g0194200 protein Q9FED7 Q9FED7_ORYSJ Os01g0194200 Os01g0194200 OSNPB_010194200 P0001B06.11 P0671B11.42 ENOG411DQ9Y ARAC2,RAC3 Q38903,A0A1P8B372 RAC2_ARATH,A0A1P8B372_ARATH Rac-like GTP-binding protein ARAC2 (GTPase protein ROP7),RAC-like 3 FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. R-ATH-194840; 22393,16170 Rac-like GTP-binding protein ARAC2 (GTPase protein ROP7),RAC-like 3 cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; small GTPase mediated signal transduction [GO:0007264],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; small GTPase mediated signal transduction [GO:0007264] TISSUE SPECIFICITY: Expressed exclusively in the root, hypocotyl and stem. locus:2161343; AT5G45970 rac-like GTP-binding protein Rac-like GTP-binding protein 7 (GTPase protein ROP5) (OsRac7) Q6Z7L8 RAC7_ORYSJ RAC7 ROP5 Os02g0312600 LOC_Os02g20850 OJ1233_A01.27 OsJ_06426 P0705A04.1 FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. ENOG411DQ9R MPK10,MPK4,MPK11 Q9M1Z5,Q39024,Q9LMM5,A0A1P8ASZ4 MPK10_ARATH,MPK4_ARATH,MPK11_ARATH,A0A1P8ASZ4_ARATH Mitogen-activated protein kinase 10 (AtMPK10) (MAP kinase 10) (EC 2.7.11.24),Mitogen-activated protein kinase 4 (AtMPK4) (MAP kinase 4) (EC 2.7.11.24),Mitogen-activated protein kinase 11 (AtMPK11) (MAP kinase 11) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24) DISRUPTION PHENOTYPE: Dwarf plants with cytokinetic defects in leaf epidermal cells. Abnormally developed and branched root hairs. Retarded root growth with the protrusion of many epidermal cells from roots. Heavily bundled and disoriented cortical microtubules resistant to oryzalin. Exhibits a seedling-lethality phenotype. Defects in the formation of the cell plate. Abnormal mature pollen grains. {ECO:0000269|PubMed:18982020, ECO:0000269|PubMed:20215588, ECO:0000269|PubMed:21098735, ECO:0000269|PubMed:21575092}. Dwarf delayed growth short roots. Defective root hairs that are branched and swollen.Ectopic root hairs.In epidermal cells cortical microtubules are bundled and disorganized. Dwarf; Curled leaves; Reduced fertility; Resistant to bacterial and oomycete infection-J. Mundy-2000 FUNCTION: The ANPs-MKK6-MPK4 module is involved in the regulation of plant cytokinesis during meiosis and mitosis. Essential to promote the progression of cytokinesis and for cellularization (formation of the cell plate) during male-specific meiosis. Involved in cortical microtubules organization and stabilization by regulating the phosphorylation state of microtubule-associated proteins such as MAP65-1. Involved in root hair development process. Negative regulator of systemic acquired resistance (SAR) and salicylic acid- (SA) mediated defense response. Required for jasmonic acid- (JA) mediated defense gene expression. May regulate activity of transcription factor controlling pathogenesis-related (PR) gene expression. Seems to act independently of the SAR regulatory protein NPR1 (Nonexpresser of PR1). Phosphorylates MKS1 and transcription factors WRKY25 and WRKY33. The MEKK1, MKK1/MKK2 and MPK4 function in a signaling pathway that modulates the expression of genes responding to biotic and abiotic stresses and also plays an important role in pathogen defense by negatively regulating innate immunity (PubMed:11163186, PubMed:15225555, PubMed:15358537, PubMed:15990873, PubMed:18982020, PubMed:20215588, PubMed:20802223, PubMed:21098735, PubMed:21575092, PubMed:25770109). Phosphorylates MEKK2 upon treatment with flg22 (PubMed:22643122). {ECO:0000269|PubMed:11163186, ECO:0000269|PubMed:15225555, ECO:0000269|PubMed:15358537, ECO:0000269|PubMed:15990873, ECO:0000269|PubMed:18982020, ECO:0000269|PubMed:20215588, ECO:0000269|PubMed:20802223, ECO:0000269|PubMed:21098735, ECO:0000269|PubMed:21575092, ECO:0000269|PubMed:22643122, ECO:0000269|PubMed:25770109}. R-ATH-110056;R-ATH-112409;R-ATH-112411;R-ATH-198753;R-ATH-198765;R-ATH-202670;R-ATH-2559582;R-ATH-3371453;R-ATH-375165;R-ATH-442742;R-ATH-444257;R-ATH-445144;R-ATH-5673001;R-ATH-5674135;R-ATH-5674499;R-ATH-6798695;R-ATH-881907; 2.7.11.24; 2.7.11.24 45174,42852,42475,39653 Mitogen-activated protein kinase 10 (AtMPK10) (MAP kinase 10) (EC 2.7.11.24),Mitogen-activated protein kinase 4 (AtMPK4) (MAP kinase 4) (EC 2.7.11.24),Mitogen-activated protein kinase 11 (AtMPK11) (MAP kinase 11) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; auxin transport [GO:0060918]; regulation of gene expression [GO:0010468]; xylem and phloem pattern formation [GO:0010051],cell plate [GO:0009504]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; microtubule [GO:0005874]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; MAP kinase activity [GO:0004707]; protein kinase activity [GO:0004672]; cortical microtubule organization [GO:0043622]; cytokinesis by cell plate formation [GO:0000911]; hyperosmotic response [GO:0006972]; hypotonic salinity response [GO:0042539]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway [GO:0009868]; male meiosis cytokinesis [GO:0007112]; phosphorylation [GO:0016310]; pollen development [GO:0009555]; protein phosphorylation [GO:0006468]; regulation of gene expression [GO:0010468]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to fungus [GO:0009620]; response to salt stress [GO:0009651]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862],cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468]; response to abscisic acid [GO:0009737],intracellular [GO:0005622]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707] DEVELOPMENTAL STAGE: Observed in root epidermal cells and root hairs, especially in the root hair formation zone. During root hair development, both observed in root hair bulges and in young outgrowing root hairs. {ECO:0000269|PubMed:20215588}. TISSUE SPECIFICITY: Ubiquitous. Expressed in the veins and stomatal guard cells of leaf plates, petioles, stem, roots and flowers. {ECO:0000269|PubMed:11163186, ECO:0000269|PubMed:20215588, ECO:0000269|PubMed:21575092}. locus:2080457;,locus:2124943;,locus:2025341; AT3G59790,AT4G01370,AT1G01560 Mitogen-activated protein kinase Mitogen-activated protein kinase 2 (MAP kinase 2) (EC 2.7.11.24),Mitogen-activated protein kinase 6 (MAP kinase 6) (EC 2.7.11.24) Q5J4W4,Q336X9 MPK2_ORYSJ,MPK6_ORYSJ MPK2 Os08g0157000 LOC_Os08g06060 P0438H08.24,MPK6 Os10g0533600 LOC_Os10g38950 OSJNBa0053C23.4 ENOG411DQ9S F4I3J0 F4I3J0_ARATH Obg-like ATPase 1 FUNCTION: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. {ECO:0000256|HAMAP-Rule:MF_03167}. 45628 Obg-like ATPase 1 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; GTP binding [GO:0005525]; ribosomal large subunit binding [GO:0043023]; ribosome binding [GO:0043022] locus:2205255; AT1G56050 GTP-dependent nucleic acid-binding protein Os03g0781000 protein A0A0P0W3T1 A0A0P0W3T1_ORYSJ Os03g0781000 OSNPB_030781000 ENOG411DQ9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FGGY family of carbohydrate kinases C-terminal domain Os12g0633000 protein A0A0P0YD07 A0A0P0YD07_ORYSJ Os12g0633000 OSNPB_120633000 ENOG411DQ9V CUT1,KCS5 Q9XF43,Q9C6L5 KCS6_ARATH,KCS5_ARATH 3-ketoacyl-CoA synthase 6 (KCS-6) (EC 2.3.1.199) (Cuticular protein 1) (Eceriferum 6) (Very long-chain fatty acid condensing enzyme 6) (VLCFA condensing enzyme 6),3-ketoacyl-CoA synthase 5 (KCS-5) (EC 2.3.1.199) (Eceriferum 60) (Very long-chain fatty acid condensing enzyme 5) (VLCFA condensing enzyme 5) DISRUPTION PHENOTYPE: Plants have no wax crystals and are male sterile. {ECO:0000269|PubMed:10330468}. Glossy, bright green inflorescence stems; Male sterile unless grown under high humidity-D. Preuss-2000 FUNCTION: Contributes to cuticular wax and suberin biosynthesis. Involved in both decarbonylation and acyl-reduction wax synthesis pathways. Required for elongation of C24 fatty acids, an essential step of the cuticular wax production (PubMed:10330468, PubMed:11041893). Major condensing enzyme for stem wax and pollen coat lipid biosynthesis (PubMed:12467640). {ECO:0000269|PubMed:10330468, ECO:0000269|PubMed:11041893, ECO:0000269|PubMed:12467640}.,FUNCTION: Mediates mostly the synthesis of VLCFAs from 26 to 30 carbons in length (e.g. C20:1, C26, C28, C30). {ECO:0000269|PubMed:15277688}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT1G68530-MONOMER;MetaCyc:AT1G68530-MONOMER;,ARA:AT1G25450-MONOMER; 2.3.1.199; 2.3.1.199 56396,55653 3-ketoacyl-CoA synthase 6 (KCS-6) (EC 2.3.1.199) (Cuticular protein 1) (Eceriferum 6) (Very long-chain fatty acid condensing enzyme 6) (VLCFA condensing enzyme 6),3-ketoacyl-CoA synthase 5 (KCS-5) (EC 2.3.1.199) (Eceriferum 60) (Very long-chain fatty acid condensing enzyme 5) (VLCFA condensing enzyme 5) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; unidimensional cell growth [GO:0009826]; wax biosynthetic process [GO:0010025],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid elongase activity [GO:0009922]; fatty acid biosynthetic process [GO:0006633]; pollen tube development [GO:0048868]; response to cold [GO:0009409]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: In epidermal cells of aerial tissues and in the tapetum of anthers near maturity (PubMed:10330468, PubMed:12177469). Expressed in siliques, flowers and leaves (PubMed:18465198). {ECO:0000269|PubMed:10330468, ECO:0000269|PubMed:12177469, ECO:0000269|PubMed:18465198}.,TISSUE SPECIFICITY: Expressed in siliques, flowers, leaves and seedlings. {ECO:0000269|PubMed:18465198}. locus:2201262;,locus:2031260; AT1G68530,AT1G25450 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q10PV5 Q10PV5_ORYSJ Os03g0220100 LOC_Os03g12030 Os03g0220100 OsJ_09950 OSNPB_030220100 ENOG411DQ9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA abscisic acid 8'-hydroxylase 3-like NA NA NA NA NA NA NA ENOG411DQ9T Q8VZ08 Q8VZ08_ARATH Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) FUNCTION: Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide. {ECO:0000256|PIRNR:PIRNR028944}. ARA:AT3G24180-MONOMER; R-ATH-1660662; 3.2.1.45 105986 Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) plasma membrane [GO:0005886]; glucosylceramidase activity [GO:0004348]; glucosylceramide catabolic process [GO:0006680] locus:2093701; AT3G24180 Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (By similarity) Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45),Os10g0473400 protein,Os07g0444000 protein,Os10g0473400 protein (Fragment) Q7XDG7,A0A0N7KRY0,A0A0P0X5C2,A0A0P0XV65 Q7XDG7_ORYSJ,A0A0N7KRY0_ORYSJ,A0A0P0X5C2_ORYSJ,A0A0P0XV65_ORYSJ LOC_Os10g33420 Os10g0473400 OSNPB_100473400,Os10g0473400 OSNPB_100473400,Os07g0444000 OSNPB_070444000 FUNCTION: Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide. {ECO:0000256|PIRNR:PIRNR028944}. ENOG411DQ9U CLPD P42762 CLPD_ARATH Chaperone protein ClpD, chloroplastic (EC 3.6.1.3) (ATP-dependent Clp protease ATP-binding subunit ClpD homolog) (Casein lytic proteinase D) (ERD1 protein) (Protein EARLY RESPONSIVE TO DEHYDRATION 1) (Protein SENESCENCE ASSOCIATED GENE 15) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000303|Ref.12}. FUNCTION: Molecular chaperone that interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast (PubMed:21737456). The ATPase activity of CLPD is stimulated by CLPT1 (PubMed:25149061). Has no ADPase activity (PubMed:21737456). Interacts with transit peptides with a positional preference (PubMed:21737456, PubMed:22545953). Localization of the signal sequence at the N-terminal end of a protein seems mandatory for interaction to take place (PubMed:22545953). {ECO:0000269|PubMed:21737456, ECO:0000269|PubMed:22545953, ECO:0000269|PubMed:25149061}. MISCELLANEOUS: CLPD is consistently found in two distinct forms, the full-length protein and a lower molecular weight form porcessed at the C-terminus. The processed form might be the active form and not the full-length protein. {ECO:0000269|PubMed:21737456}. 3.6.1.3 103235 Chaperone protein ClpD, chloroplastic (EC 3.6.1.3) (ATP-dependent Clp protease ATP-binding subunit ClpD homolog) (Casein lytic proteinase D) (ERD1 protein) (Protein EARLY RESPONSIVE TO DEHYDRATION 1) (Protein SENESCENCE ASSOCIATED GENE 15) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; protein homodimerization activity [GO:0042803]; protein hexamerization [GO:0034214]; protein metabolic process [GO:0019538] TISSUE SPECIFICITY: Expressed in stems and leaves. {ECO:0000269|PubMed:11982939}. locus:2157363; AT5G51070 chaperone protein Chaperone protein ClpD1, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpD homolog 1) (Casein lytic proteinase D1),Chaperone protein ClpD2, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpD homolog 2) (Casein lytic proteinase D2),Os04g0405000 protein (Fragment) Q6H795,Q7XL03,A0A0P0WA85 CLPD1_ORYSJ,CLPD2_ORYSJ,A0A0P0WA85_ORYSJ CLPD1 Os02g0526400 LOC_Os02g32520 P0458B05.10,CLPD2 Os04g0405000 LOC_Os04g33210 OJ000315_02.14,Os04g0405000 OSNPB_040405000 FUNCTION: Molecular chaperone that may function in heat stress response. May interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast (PubMed:20141629). Chaperone involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress (PubMed:27457985). {ECO:0000269|PubMed:20141629, ECO:0000269|PubMed:27457985}.,FUNCTION: Molecular chaperone that may interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast. {ECO:0000250}. MISCELLANEOUS: Plants overexpressing CLPD1 exhibit improved tolerance to drought and salt stresses. {ECO:0000269|PubMed:27457985}. ENOG411E6T7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FGGY family of carbohydrate kinases N-terminal domain NA NA NA NA NA NA NA ENOG411DUPE MUF9.21 F4K0E2,Q9FKI9 F4K0E2_ARATH,Q9FKI9_ARATH RING/U-box superfamily protein,Emb|CAB86085.1 (RING/U-box superfamily protein) 53677,52851 RING/U-box superfamily protein,Emb|CAB86085.1 (RING/U-box superfamily protein) integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2175158; AT5G60580 zinc finger Os06g0677300 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:J023088I08, full insert sequence),Os02g0165000 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:J023019O21, full insert sequence) Q653U9,Q6H6V3 Q653U9_ORYSJ,Q6H6V3_ORYSJ Os06g0677300 B1153E06.19 OSNPB_060677300 P0710B08.13,Os02g0165000 Os02g0165000 OJ1661_C12.27 OsJ_05507 OSJNBa0023I17.10 OSNPB_020165000 ENOG411DUPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper bZIP transcription factor RISBZ5 (Rice seed bZIP5) (bZIP transcription factor 52) (OsbZIP52),bZIP transcription factor RISBZ3 (Rice seed bZIP3) (bZIP transcription factor 20) (OsbZIP20),bZIP transcription factor RISBZ4 (Rice seed bZIP4) (bZIP transcription factor 15) (OsbZIP15) Q654B3,Q6ETX0,Q6H500 RSBZ5_ORYSJ,RSBZ3_ORYSJ,RSBZ4_ORYSJ RISBZ5 BZIP52 Os06g0662200 LOC_Os06g45140 OsJ_22252 OSJNBb0065C04.12,RISBZ3 BZIP20 RITA-1 Os02g0266800 LOC_Os02g16680 OsJ_06179 P0006C08.38,RISBZ4 BZIP15 RITA-2 Os02g0175100 LOC_Os02g07840 OJ1077_E05.6 OsJ_05580 OSJNBa0073A21.32 FUNCTION: Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}.,FUNCTION: Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.,FUNCTION: Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}. MISCELLANEOUS: Plants over-expressing RISBZ5/BZIP52 showed significantly increased sensitivity to cold and drought stresses. {ECO:0000269|PubMed:22189955}. ENOG411DUPG ISPE O81014 ISPE_ARATH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic (EC 2.7.1.148) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) (CDPMEK) (CMEK) (Protein PIGMENT DEFECTIVE 277) DISRUPTION PHENOTYPE: Albino phenotype and seedling lethal when homozygous. The phenotype is caused by an early arrest in chloroplast differentiation. {ECO:0000269|PubMed:18236010}. ispE-1 mutants die as albino lethal mutants. Photosynthetic pigments Seedling lethal; Albino embryos and seedlings-J. Chen-2008 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Is essential for chloroplast development. {ECO:0000269|PubMed:18236010}. PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 3/6. ARA:AT2G26930-MONOMER; 2.7.1.148 42043 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic (EC 2.7.1.148) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) (CDPMEK) (CMEK) (Protein PIGMENT DEFECTIVE 277) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [GO:0050515]; ATP binding [GO:0005524]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288]; terpenoid biosynthetic process [GO:0016114] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18236010}. locus:2039503; AT2G26930 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic (EC 2.7.1.148) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) (CDPMEK) (CMEK) Q8S2G0 ISPE_ORYSJ ISPE Os01g0802100 LOC_Os01g58790 OsJ_01815 P0003D09.29 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Is essential for chloroplast development (By similarity). {ECO:0000250}. ENOG411DUPF Q56WS1,Q0WQM7,B3H7G0 Q56WS1_ARATH,Q0WQM7_ARATH,B3H7G0_ARATH Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 31975,33066,31585 Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2060015; AT2G42240 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os06g0687500 protein (RNA-binding protein-like) (cDNA clone:006-309-A02, full insert sequence) Q653F9 Q653F9_ORYSJ Os06g0687500 Os06g0687500 OSNPB_060687500 P0623A10.27 ENOG411DUPA IRX10L,IRX10 Q940Q8,Q9FZJ1 IX10L_ARATH,IRX10_ARATH Probable beta-1,4-xylosyltransferase IRX10L (EC 2.4.2.-) (Glucuronoxylan glucuronosyltransferase 1) (AtGUT1) (Glucuronoxylan glucuronosyltransferase 2) (AtGUT2) (Protein IRREGULAR XYLEM 10-like) (Xylan xylosyltransferase IRX10L),Probable beta-1,4-xylosyltransferase IRX10 (EC 2.4.2.-) (Glucuronoxylan glucuronosyltransferase 1) (AtGUT1) (Glucuronoxylan glucuronosyltransferase 2) (Protein IRREGULAR XYLEM 10) (Xylan xylosyltransferase IRX10) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:18980662). Slightly short inflorescence and reduced fertility (PubMed:18980649). {ECO:0000269|PubMed:18980649, ECO:0000269|PubMed:18980662}.,DISRUPTION PHENOTYPE: Moderate IRX phenotype. Slight reduction of secondary wall thickness and xylan content in cell wall (PubMed:15980264, PubMed:18980662). Specific loss of the GlcUA side chain in xylans. Slightly short inflorescence and reduced fertility (PubMed:18980649). {ECO:0000269|PubMed:15980264, ECO:0000269|PubMed:18980649, ECO:0000269|PubMed:18980662}. Slightly abnormal xylem-S. Turner-2009 FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone. {ECO:0000269|PubMed:18980649, ECO:0000269|PubMed:18980662, ECO:0000269|PubMed:20424005}.,FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone, especially in the formation of GlcUA side chain of xylans. {ECO:0000269|PubMed:18980649, ECO:0000269|PubMed:18980662, ECO:0000269|PubMed:20424005}. ARA:AT5G61840-MONOMER;,ARA:AT1G27440-MONOMER; 2.4.2.- 47195,46843 Probable beta-1,4-xylosyltransferase IRX10L (EC 2.4.2.-) (Glucuronoxylan glucuronosyltransferase 1) (AtGUT1) (Glucuronoxylan glucuronosyltransferase 2) (AtGUT2) (Protein IRREGULAR XYLEM 10-like) (Xylan xylosyltransferase IRX10L),Probable beta-1,4-xylosyltransferase IRX10 (EC 2.4.2.-) (Glucuronoxylan glucuronosyltransferase 1) (AtGUT1) (Glucuronoxylan glucuronosyltransferase 2) (Protein IRREGULAR XYLEM 10) (Xylan xylosyltransferase IRX10) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; 1,4-beta-D-xylan synthase activity [GO:0047517]; glucuronoxylan glucuronosyltransferase activity [GO:0080116]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan biosynthetic process [GO:0045492],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucuronoxylan glucuronosyltransferase activity [GO:0080116]; xylosyltransferase activity [GO:0042285]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834] DEVELOPMENTAL STAGE: In flowers, expressed in anthers, stigmas and styles. {ECO:0000269|PubMed:18980649}.,DEVELOPMENTAL STAGE: In flowers, restricted to anthers. {ECO:0000269|PubMed:18980649}. TISSUE SPECIFICITY: Present in the xylem and phloem, and, to a lower extent, in interfascicular cells. Expressed in the root tip, shoot apical meristem (SAM), xylem cells of roots and stems, and in the vasculature of roots, cotyledons and leaves. {ECO:0000269|PubMed:18980649, ECO:0000269|PubMed:20424005}.,TISSUE SPECIFICITY: Limited to xylem cells. Expressed in the root tip, xylem cells of roots, and in the vasculature of roots, cotyledons and leaves. {ECO:0000269|PubMed:18980649, ECO:0000269|PubMed:20424005}. locus:2159198;,locus:2016004; AT5G61840,AT1G27440 glucuronoxylan glucuronosyltransferase activity Probable glucuronosyltransferase Os01g0926700 (EC 2.4.-.-),Probable glucuronosyltransferase Os04g0398600 (EC 2.4.-.-),Os04g0398600 protein (Fragment),Os01g0926700 protein (Fragment) Q8S1X7,Q7XLG3,A0A0N7KIZ9,A0A0P0VCC9 GT15_ORYSJ,GT42_ORYSJ,A0A0N7KIZ9_ORYSJ,A0A0P0VCC9_ORYSJ Os01g0926700 LOC_Os01g70200 OsJ_04618 OSJNBa0093F16.20 P0482D04.17,Os04g0398600 LOC_Os04g32670 OsJ_14642 OSJNBa0039C07.13,Os04g0398600 OSNPB_040398600,Os01g0926700 OSNPB_010926700 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411DUPC RPN6 Q9LP45 PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog (19S proteosome subunit 9) (AtS9) (26S proteasome regulatory subunit RPN6) (AtRPN6) (26S proteasome regulatory subunit S9 homolog) FUNCTION: Component of the lid subcomplex of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. In the complex, RPN6A is required for proteasome assembly (By similarity). {ECO:0000250}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 46749 26S proteasome non-ATPase regulatory subunit 11 homolog (19S proteosome subunit 9) (AtS9) (26S proteasome regulatory subunit RPN6) (AtRPN6) (26S proteasome regulatory subunit S9 homolog) cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; proteasome complex [GO:0000502]; proteasome regulatory particle, lid subcomplex [GO:0008541]; structural molecule activity [GO:0005198]; proteasome assembly [GO:0043248]; protein catabolic process [GO:0030163]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2030017; AT1G29150 26S proteasome non-ATPase regulatory subunit OSJNBa0027P08.4 protein (OSJNBa0058G03.7 protein) (Os04g0444600 protein) (cDNA clone:J013000B21, full insert sequence),Os04g0444600 protein (Fragment),Os03g0576400 protein Q7X5X9,A0A0P0WAP9,A0A0P0VZM1 Q7X5X9_ORYSJ,A0A0P0WAP9_ORYSJ,A0A0P0VZM1_ORYSJ Os04g0444600 Os04g0444600 OsJ_14933 OSJNBa0027P08.4 OSJNBa0058G03.7 OSNPB_040444600,Os04g0444600 OSNPB_040444600,Os03g0576400 OSNPB_030576400 ENOG411DUPB CHLOROPHYLL PROTEIN 24 Q9LMQ2 Q9LMQ2_ARATH Chlorophyll a-b binding protein, chloroplastic retarded growth reduced NPQ amplitude limited electron transport rate,The mutant shows ABA insensitivity in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the mutant lose more water than those of the wild-type plants under dehydration condition; both young seedlings and mature plants of the mutant have lower capacity to conserve water during drought stress in comparison with wild-type plants. The ROS levels increase in the mutant in comparison with wild-type plants in both the whole leaves and in guard cells. Treatment with low concentrations of ABA reduces ROS levels in both whole leaves(1 to 10 uM ABA application) and in guard cells(5 uM ABA application) in the mutant plants.,No change in the chlorophyll a/b ratio and no change in the content of various xanthophylls compared to wild type. Moreover there was no difference in the extent light-induced deepoxidation of the xanthophyll cycle pigments.,No visible phenotype.,Reduction in growth rate of the mutant plants compared with the wild type: the rate of increase in rosette diameter was slower the average time for flowering increased by several days and the fresh weight was lower.,The kinetics of NPQ formation were altered in the mutant plants compared with the wild type; in the latter the rapid rise in NPQ was followed by a slower phase whereas in the mutant the slower phase was almost completely absent. The reduction in qE in the CP24-depleted plants was observed at all light intensities with a maximum reduction of ~60% in the mutants.,When the FR light is turned off in State I the induction of State II occurs rapidly and is complete within 3 min. By contrast in the wild type this takes at least 10 min.,lhcb1 lhcb6 double mutant show ABA insensitivity than wild-type in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the double mutant lose more water than those of wild-type plants under dehydration condition and that both young seedlings and mature plants of the double mutant have lower capacity to conserve their water during drought stress in comparison with wild-type plants. The ROS levels increase in the double mutants in comparison with wild-type plants in both the whole leaves and in guard cells. Low concentrations ABA treatments reduce ROS levels of double mutents in both whole leaves(1 to 10 ;M ABA application) and in guard cells(5 ;M ABA application).,lhcb6 cch double mutant shows ABA insensitivity than wild-type in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening and the strength of the ABA insensitive phenotypes is comparable to that of the cch mutant stronger than that of the lhcb6 single mutant and lhcb1 lhcb6 double mutant. Slightly slower growth; Reduced fresh weight-P. Horton-2006 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. 27523 Chlorophyll a-b binding protein, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; photosystem II antenna complex [GO:0009783]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; nonphotochemical quenching [GO:0010196]; photosynthesis [GO:0015979]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298] locus:2036209; AT1G15820 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic Q7XV11 Q7XV11_ORYSJ Os04g0457000 Os04g0457000 OSJNBa0036B21.6 OSNPB_040457000 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DUPM PER41,PER6,PER65 O23609,O48677,Q9FJR1 PER41_ARATH,PER6_ARATH,PER65_ARATH Peroxidase 41 (Atperox P41) (EC 1.11.1.7),Peroxidase 6 (Atperox P6) (EC 1.11.1.7),Peroxidase 65 (Atperox P65) (EC 1.11.1.7) (ATP43) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G17690-MONOMER;,ARA:AT5G47000-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 36198,36253,37014 Peroxidase 41 (Atperox P41) (EC 1.11.1.7),Peroxidase 6 (Atperox P6) (EC 1.11.1.7),Peroxidase 65 (Atperox P65) (EC 1.11.1.7) (ATP43) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; xylan 1,4-beta-xylosidase activity [GO:0009044]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2129386;,locus:2032392;,locus:2170997; AT4G17690,AT1G24110,AT5G47000 peroxidase Peroxidase (EC 1.11.1.7) Q6Z7S2 Q6Z7S2_ORYSJ prx31 Os02g0741200 OSNPB_020741200 P0516G10.25 P0585G03.3 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. {ECO:0000256|SAAS:SAAS00709921}. ENOG411DUPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os05g0594500 protein,Os05g0594500 protein (Fragment) Q5TKG2,A0A0P0WRM3 Q5TKG2_ORYSJ,A0A0P0WRM3_ORYSJ Os05g0594500 Os05g0594500 OSJNBa0030I14.4 OSNPB_050594500,Os05g0594500 OSNPB_050594500 ENOG411DUPI DRP1C Q8LF21 DRP1C_ARATH Dynamin-related protein 1C (Dynamin-like protein 5) (Dynamin-like protein C) (Dynamin-like protein DLP1) Complete male gametophyte defective-S. Bednarek-2003 FUNCTION: Microtubule-associated force-producing protein that is targeted to the growing edges of the cell plate during cytokinesis. Plays also a major role in plasma membrane maintenance during pollen maturation. {ECO:0000269|PubMed:12834397, ECO:0000269|PubMed:14750520}. ARA:AT1G14830-MONOMER; 68723 Dynamin-related protein 1C (Dynamin-like protein 5) (Dynamin-like protein C) (Dynamin-like protein DLP1) cell cortex [GO:0005938]; cell plate [GO:0009504]; cytoplasm [GO:0005737]; membrane [GO:0016020]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; mitochondrial fission [GO:0000266]; mitochondrion organization [GO:0007005]; pollen maturation [GO:0010152] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12834397}. locus:2006777; AT1G14830 dynamin-related protein Dynamin-related protein 1C, putative, expressed (Os03g0713100 protein) (Putative GTP-binding protein) (cDNA, clone: J100087M13, full insert sequence),Dynamin-related protein 1C, putative, expressed (Os10g0567800 protein) (Putative phragmoplastin) (cDNA clone:J033007I10, full insert sequence),Os10g0567800 protein (Fragment) Q8W315,Q7XBZ9,A0A0N7KS87 Q8W315_ORYSJ,Q7XBZ9_ORYSJ,A0A0N7KS87_ORYSJ Os03g0713100 LOC_Os03g50520 OsJ_12333 OSJNBa0014G15.4 OSNPB_030713100,OSJNBa0057L21.1 LOC_Os10g41820 Os10g0567800 OsJ_32513 OSNPB_100567800,Os10g0567800 OSNPB_100567800 ENOG411DUPH CYP90D1 Q94IA6,A0A178VBI6 C90D1_ARATH,A0A178VBI6_ARATH 3-epi-6-deoxocathasterone 23-monooxygenase (EC 1.14.13.112) (Cytochrome P450 90D1),Cytochrome P450, family 90, subfamily D, polypeptide 1 Dwarf phenotype.,Flowers are male sterile as they never open to release pollen even though the capsule size is normal.,Flowers are smaller and develop one week later than wild type or single mutants.,In etiolated seedlings hypocotyl length is less than 10% of that of wild type control and the cotyledons were open.,Light grown seedlings have a reduced hypocotyl length as well as short epinastic cotyledons.,Severely dwarfed with globular shape and curly succulent leaves.,Flowers are indistinguishable from those of wild type.,No visible phenotype.,One-month-old plants have a reduced apical dominance with multiple shortened primary inflorescence stems and elongated secondary inflorescence stems. FUNCTION: C-23 hydroxylase involved in brassinosteroids biosynthesis. Converts directly (22S,24R)-22-hydroxy-5-alpha-ergostan-3-one and 3-epi-6-deoxocathasterone to 3-dehydro-6-deoxoteasterone and 6-deoxotyphasterol. These C-23 hydroxylation shortcuts bypass campestanol, 6-deoxocathasterone, and 6-deoxoteasterone. Functionally redundant with CYP90C1. {ECO:0000269|PubMed:15703058, ECO:0000269|PubMed:17138693}. PATHWAY: Plant hormone biosynthesis; brassinosteroid biosynthesis. ARA:AT3G13730-MONOMER;MetaCyc:AT3G13730-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.13.112 56153,52864 3-epi-6-deoxocathasterone 23-monooxygenase (EC 1.14.13.112) (Cytochrome P450 90D1),Cytochrome P450, family 90, subfamily D, polypeptide 1 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; (22S)-22-hydroxy-5alpha-campestan-3-one C-23 hydroxylase activity [GO:0102097]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; leaf development [GO:0048366]; petal development [GO:0048441]; stamen development [GO:0048443]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Expressed in leaf vascular tissue. {ECO:0000269|PubMed:15703058}. locus:2091571; AT3G13730 cytochrome P450 Cytochrome P450 90D2 (EC 1.14.-.-) (C6-oxidase),Os01g0197100 protein Q94IW5,A0A0P0UZ85 C90D2_ORYSJ,A0A0P0UZ85_ORYSJ CYP90D2 D2 Os01g0197100 LOC_Os01g10040 P0419B01.11,Os01g0197100 OSNPB_010197100 DISRUPTION PHENOTYPE: Plants show abnormalities in growth: inhibition of second internode elongation, shortened leaf sheaths, erect leaves, and deficiency in skotomorphogenesis. Treatment with exogenous brassinolide rescues the abnormal phenotype. {ECO:0000269|PubMed:14615594}. FUNCTION: May convert 6-deoxoteasterone to 3-dehydro-6-deoxoteasterone, and teasterone to 3-dehydroteasterone. Catalyzes the C6-oxidation step in brassinosteroids biosynthesis. Involved in the elongation of leaf sheaths and stems. {ECO:0000269|PubMed:14615594}. ENOG411DUPK COQ5 Q9LVC8 COQ5_ARATH 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (EC 2.1.1.201) (Ubiquinone biosynthesis methyltransferase COQ5) FUNCTION: Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). {ECO:0000255|HAMAP-Rule:MF_03191}. PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03191}. ARA:AT5G57300-MONOMER; 2.1.1.201 32290 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (EC 2.1.1.201) (Ubiquinone biosynthesis methyltransferase COQ5) mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity [GO:0102005]; ubiquinone biosynthetic process [GO:0006744] locus:2165630; AT5G57300 ubiquinone biosynthesis methyltransferase COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (EC 2.1.1.201) (Ubiquinone biosynthesis methyltransferase COQ5) Q5JNC0 COQ5_ORYSJ COQ5 Os01g0976600 LOC_Os01g74520 OsJ_04965 P0020E09.9 FUNCTION: Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). {ECO:0000255|HAMAP-Rule:MF_03191}. ENOG411DUPJ Q8GX25 Q8GX25_ARATH At1g76250 (Transmembrane protein) (Uncharacterized protein At1g76250/T23E18_34) 49067 At1g76250 (Transmembrane protein) (Uncharacterized protein At1g76250/T23E18_34) integral component of membrane [GO:0016021] locus:2199782; AT1G76250 NA Os02g0119600 protein (Fragment),Os08g0360500 protein A0A0P0VE93,A0A0P0XF70 A0A0P0VE93_ORYSJ,A0A0P0XF70_ORYSJ Os02g0119600 OSNPB_020119600,Os08g0360500 OSNPB_080360500 ENOG411DUPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0685400 protein (Fragment) A0A0P0V6Q6 A0A0P0V6Q6_ORYSJ Os01g0685400 OSNPB_010685400 ENOG411DUPT LCB2b,LCB2a Q9M304,Q9LSZ9,A0A1I9LRL9,F4JF53 LCB2B_ARATH,LCB2A_ARATH,A0A1I9LRL9_ARATH,F4JF53_ARATH Long chain base biosynthesis protein 2b (AtLCB2b) (EC 2.3.1.50) (Serine palmitoyltransferase 1) (AtSPT1),Long chain base biosynthesis protein 2a (AtLCB2a) (EC 2.3.1.50) (Long chain base biosynthesis protein 2) (AtLCB2),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype. Lcb2a and lcb2b double mutant is not viable due to pollen lethality. {ECO:0000269|PubMed:18208516}. Double mutant is male gametophytic lethal due to defects in pollen development. Phenotype of the double mutant pollens became apparent in the bicellular stage. The cytoplasm was less dense and plastids were dilated and lacked oil droplets. The nuclear envelope structure was modified by the formation of vesicles between the inner and outer membranes. The microspores lacked the intine layer and consequently lacked clearly defined ER and Golgi. FUNCTION: Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1 constitutes the catalytic core. Plays an important role during male gametogenesis and embryogenesis. {ECO:0000269|PubMed:18208516}.,FUNCTION: Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1 constitutes the catalytic core. Involved in the regulation of the programmed cell death (PCD) signaling pathway. Plays an important role during male gametogenesis and embryogenesis. {ECO:0000269|PubMed:11726713, ECO:0000269|PubMed:18208516, ECO:0000269|PubMed:21534970}. MISCELLANEOUS: The lcb2a-1 mutant is incapable of initiating programmed cell death (PCD) after induction by fumonisin B1 (FB1), a specific inhibitor of ceramide synthase. PATHWAY: Lipid metabolism; sphingolipid metabolism. ARA:AT3G48780-MONOMER;,ARA:AT5G23670-MONOMER;MetaCyc:AT5G23670-MONOMER; 2.3.1.50; 2.3.1.50 53863,54290,34800,38103 Long chain base biosynthesis protein 2b (AtLCB2b) (EC 2.3.1.50) (Serine palmitoyltransferase 1) (AtSPT1),Long chain base biosynthesis protein 2a (AtLCB2a) (EC 2.3.1.50) (Long chain base biosynthesis protein 2) (AtLCB2),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; pyridoxal phosphate binding [GO:0030170]; serine C-palmitoyltransferase activity [GO:0004758]; photomorphogenesis [GO:0009640]; pollen development [GO:0009555]; sphingolipid biosynthetic process [GO:0030148],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuole [GO:0005773]; pyridoxal phosphate binding [GO:0030170]; serine C-palmitoyltransferase activity [GO:0004758]; photomorphogenesis [GO:0009640]; pollen development [GO:0009555]; regulation of programmed cell death [GO:0043067]; sphingosine biosynthetic process [GO:0046512],pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; biosynthetic process [GO:0009058] DEVELOPMENTAL STAGE: In young flower buds was initially restricted to developing pollen spores within the stamen and is not detected in the petals, glumes or petiole until the flowers are mature. {ECO:0000269|PubMed:18208516}.,DEVELOPMENTAL STAGE: Detected at high levels in the petiole, sepals and petals in young flowers, but was not detected in the anthers during the early stages of pollen development. {ECO:0000269|PubMed:18208516}. TISSUE SPECIFICITY: Ubiquitous with the highest expression in flowers. {ECO:0000269|PubMed:18208516}.,TISSUE SPECIFICITY: Ubiquitous. Detected in leaves, roots, stems, flowers and at a lower level in mature seeds. {ECO:0000269|PubMed:11171191, ECO:0000269|PubMed:11726713, ECO:0000269|PubMed:18208516}. locus:2099428;,locus:2171731;,locus:2099438; AT3G48780,AT5G23670,AT3G48790 serine palmitoyltransferase Long chain base biosynthesis protein 2a (EC 2.3.1.50),Long chain base biosynthesis protein 2b (EC 2.3.1.50),Long chain base biosynthesis protein 2d (EC 2.3.1.50),Long chain base biosynthesis protein 2c (EC 2.3.1.50) Q2R3K3,Q8RYL1,Q5JK39,Q8RYL0 LCB2A_ORYSJ,LCB2B_ORYSJ,LCB2D_ORYSJ,LCB2C_ORYSJ Os11g0516000 LOC_Os11g31640 OsJ_34042,Os01g0928600 LOC_Os01g70360 OsJ_04633 OSJNBa0052O12.11,Os01g0928800 LOC_Os01g70380 OsJ_04635 OSJNBa0052O12.15,Os01g0928700 LOC_Os01g70370 OsJ_04634 OSJNBa0052O12.13 FUNCTION: Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1 constitutes the catalytic core (By similarity). {ECO:0000250}. ENOG411DUPW HPD,PDS1 P93836,F4IDP2 HPPD_ARATH,F4IDP2_ARATH 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase),4-hydroxyphenylpyruvate dioxygenase Seedling lethal (inferred from pigment defect)-D. DellaPenna-1998 PATHWAY: Amino-acid degradation; L-phenylalanine degradation; acetoacetate and fumarate from L-phenylalanine: step 3/6.; PATHWAY: Cofactor biosynthesis; prenylquinone biosynthesis. 1.13.11.27; Phenylalanine metabolism (00360),Tyrosine metabolism (00350),Ubiquinone and other terpenoid-quinone biosynthesis (00130),Metabolic pathways (01100) 1.13.11.27 48816,45963 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase),4-hydroxyphenylpyruvate dioxygenase cytoplasm [GO:0005737]; 4-hydroxyphenylpyruvate dioxygenase activity [GO:0003868]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; L-phenylalanine catabolic process [GO:0006559]; tyrosine catabolic process [GO:0006572],4-hydroxyphenylpyruvate dioxygenase activity [GO:0003868]; aromatic amino acid family metabolic process [GO:0009072] AT1G06570 4-hydroxyphenylpyruvate dioxygenase Os02g0168100 protein (Fragment) Q0E3L4 Q0E3L4_ORYSJ Os02g0168100 Os02g0168100 OSNPB_020168100 ENOG411DUPV PRS3,PRS4 Q93Z66,Q680A5,A0A1P8ANQ1 KPRS3_ARATH,KPRS4_ARATH,A0A1P8ANQ1_ARATH Ribose-phosphate pyrophosphokinase 3, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 3),Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 4),Phosphoribosyl pyrophosphate (PRPP) synthase 3 ARA:AT1G10700-MONOMER;,ARA:AT2G42910-MONOMER; 2.7.6.1 44697,37560,32369 Ribose-phosphate pyrophosphokinase 3, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 3),Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 4),Phosphoribosyl pyrophosphate (PRPP) synthase 3 chloroplast [GO:0009507]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165],cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; ribose phosphate diphosphokinase activity [GO:0004749]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165] locus:2019973;,locus:2045590; AT1G10700,AT2G42910 Ribose-phosphate pyrophosphokinase Ribose-phosphate pyrophosphokinase 3, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 3),Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 4) Q8S2E5,Q6ZFT5 KPRS3_ORYSJ,KPRS4_ORYSJ Os01g0723600 LOC_Os01g52530 P0022F10.17,Os02g0714600 LOC_Os02g48390 OJ1191_G08.2 OJ1479_B12.26 OsJ_08135 ENOG411DUPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q0ISY7 Q0ISY7_ORYSJ Os11g0441500 LOC_Os11g25454 Os11g0441500 OSNPB_110441500 ENOG411DUPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family Os03g0665000 protein Q0DPT4 Q0DPT4_ORYSJ Os03g0665000 OSNPB_030665000 ENOG411DUPS BOB2,BOB1 Q9STN7,Q9LV09 BOB2_ARATH,BOB1_ARATH Protein BOBBER 2,Protein BOBBER 1 DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:19571304, ECO:0000269|PubMed:19648297}. Embryo defective; Globular-M. Barton-2009 FUNCTION: Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone (By similarity). {ECO:0000250}.,FUNCTION: Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone. {ECO:0000269|PubMed:19571304, ECO:0000269|PubMed:19648297, ECO:0000269|PubMed:20514234}. 33521,34507 Protein BOBBER 2,Protein BOBBER 1 cytoplasm [GO:0005737]; unfolded protein binding [GO:0051082]; multicellular organism development [GO:0007275]; protein folding [GO:0006457],cytoplasm [GO:0005737]; cytosol [GO:0005829]; unfolded protein binding [GO:0051082]; developmental process [GO:0032502]; embryonic pattern specification [GO:0009880]; heat acclimation [GO:0010286]; inflorescence meristem growth [GO:0010450]; leaf morphogenesis [GO:0009965]; pollen development [GO:0009555]; protein folding [GO:0006457]; response to cytokinin [GO:0009735]; response to heat [GO:0009408]; specification of floral organ number [GO:0048833]; stamen morphogenesis [GO:0048448] DEVELOPMENTAL STAGE: Expressed during early embryo development, from the eight-cell stage until the end of the heart stage. {ECO:0000269|PubMed:19648297}. TISSUE SPECIFICITY: Expressed in all seedling tissues with highest expression levels at the root tip. {ECO:0000269|PubMed:19571304}. locus:2137345;,locus:2178431; AT4G27890,AT5G53400 Nuclear movement family protein Os02g0743800 protein,Os02g0743800 protein (Putative salt tolerance protein 5),Os06g0231300 protein (Putative salt tolerance protein 5) Q6Z2U6,Q6Z2U7,Q67X37 Q6Z2U6_ORYSJ,Q6Z2U7_ORYSJ,Q67X37_ORYSJ OJ1734_E02.22-2 Os02g0743800 OSNPB_020743800,OJ1734_E02.22-1 Os02g0743800 OsJ_08353 OSNPB_020743800,Os06g0231300 Os06g0231300 OsJ_20696 OSNPB_060231300 P0525F01.37 ENOG411DUPR BI-1 Q9LD45,Q9LTB6,A0A1P8BFV1,F4JX16,F4JP81 BI1_ARATH,Q9LTB6_ARATH,A0A1P8BFV1_ARATH,F4JX16_ARATH,F4JP81_ARATH Bax inhibitor 1 (AtBI-1) (BI-1),Bax inhibitor-1 family protein (Similarity to Bax inhibitor-1),Bax inhibitor-1 family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Accelerated methyl jasmonate-induced leaf senescence. Enhanced sensitivity to water stress, heat shock, toxin, tunicamycin and pathogens. {ECO:0000269|PubMed:16507080, ECO:0000269|PubMed:18039663, ECO:0000269|PubMed:19674971, ECO:0000269|PubMed:20298483, ECO:0000269|PubMed:22563118}. Accelerated progression of cell death upon infiltration of leaf with a PCD-inducing fungal toxin FB1 and increased sensitivity to heat-shock-induced cell death.,Increased sensitivity to tunicamycin an inhibitor of N-linked glycosylation and inducer of ER stress. After treatment mutant seedlings display growth defects and chlorophyll loss. Mutant roots show increased levels of H2O2 and induction of programmed cell death. Sensitive to heat shock, fumonisin B1 (fungal toxin), and tunicamycin (inducer of the unfolded protein response)-E. Lam-2007 FUNCTION: Suppressor of apoptosis. Modulator of endoplasmic reticulum stress-mediated programmed cell death. Involved in methyl jasmonate-induced leaf senescence through regulating cytoplasmic calcium level. {ECO:0000269|PubMed:16507080, ECO:0000269|PubMed:18039663, ECO:0000269|PubMed:22563118}. 27483,20868,25228,23231,27946 Bax inhibitor 1 (AtBI-1) (BI-1),Bax inhibitor-1 family protein (Similarity to Bax inhibitor-1),Bax inhibitor-1 family protein cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; ER overload response [GO:0006983]; negative regulation of apoptotic process [GO:0043066]; negative regulation of programmed cell death [GO:0043069]; response to water deprivation [GO:0009414]; very long-chain fatty acid metabolic process [GO:0000038],integral component of membrane [GO:0016021]; negative regulation of apoptotic process [GO:0043066] TISSUE SPECIFICITY: Expressed in root tips, root vasculature, flower tissues, including stamens and sepals, and in the base of siliques. Not detected in mature leaves. {ECO:0000269|PubMed:19674971}. locus:2151977;,locus:2151982;,locus:2129216; AT5G47120,AT5G47130,AT4G17580 Bax inhibitor Bax inhibitor 1 (BI-1) (OsBI-1) Q9MBD8 BI1_ORYSJ BI1 Os02g0125300 LOC_Os02g03280 P0482F12.1-1 P0482F12.1-2 FUNCTION: Suppressor of apoptosis. {ECO:0000250}. ENOG411DUPY F4J2C4,F4J2C6,F4J2C5 F4J2C4_ARATH,F4J2C6_ARATH,F4J2C5_ARATH Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein 120599,118286,118558 Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein integral component of membrane [GO:0016021] locus:2079419; AT3G03790 Regulator of chromosome condensation Os07g0165200 protein (Fragment) Q0D8E2 Q0D8E2_ORYSJ Os07g0165200 Os07g0165200 OSNPB_070165200 ENOG411DUPX MQM1.4 B4F7Q8,F4JF58,A0A1P8ATK0,A0A1P8ATH4,F4HUW0,A8MQQ4,F4KE92 B4F7Q8_ARATH,F4JF58_ARATH,A0A1P8ATK0_ARATH,A0A1P8ATH4_ARATH,F4HUW0_ARATH,A8MQQ4_ARATH,F4KE92_ARATH AT1G28090 protein (At1g28090) (Polynucleotide adenylyltransferase family protein),tRNA nucleotidyltransferase/polyA polymerase family protein,Polynucleotide adenylyltransferase family protein 57151,58458,41609,54842,61147,54366,59614 AT1G28090 protein (At1g28090) (Polynucleotide adenylyltransferase family protein),tRNA nucleotidyltransferase/polyA polymerase family protein,Polynucleotide adenylyltransferase family protein nucleotidyltransferase activity [GO:0016779]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2010439;,locus:2171641; AT1G28090,AT3G48830,AT5G23690 Polynucleotide adenylyltransferase family protein OSJNBb0039F02.3 protein (Os04g0395900 protein) (cDNA clone:J013001K04, full insert sequence) Q7XV96 Q7XV96_ORYSJ Os04g0395900 Os04g0395900 OSJNBb0039F02.3 OSNPB_040395900 ENOG411DUPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein (Fragment) Q0JIG3,A0A0P0WP14 Q0JIG3_ORYSJ,A0A0P0WP14_ORYSJ Os01g0803300 Os01g0803300 OSNPB_010803300,Os05g0493800 OSNPB_050493800 ENOG411E9U4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411DUP5 MRO11.7 Q9FF91,A0A1P8BAU8,F4KG65,F4KG64,A0A1R7T3E3 Q9FF91_ARATH,A0A1P8BAU8_ARATH,F4KG65_ARATH,F4KG64_ARATH,A0A1R7T3E3_ARATH GPI-anchored adhesin-like protein,Oxidoreductase/transition metal ion-binding protein 103927,90750,57801,85132,84142 GPI-anchored adhesin-like protein,Oxidoreductase/transition metal ion-binding protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536],chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plastid [GO:0009536],integral component of membrane [GO:0016021] locus:2172853;,locus:2156687; AT5G23890,AT5G52410 Inherit from NOG: s-layer protein Expressed protein (Os03g0862100 protein) Q10A81 Q10A81_ORYSJ Os03g0862100 LOC_Os03g64400 Os03g0862100 OSNPB_030862100 ENOG411DUP4 HEN4,F19C24.19 F4KDN0,Q9C553,F4KDY1,F4KDM9,F4KDN1 HEN4_ARATH,Q9C553_ARATH,F4KDY1_ARATH,F4KDM9_ARATH,F4KDN1_ARATH KH domain-containing protein HEN4 (Protein HUA ENHANCER 4),At1g51580 (RNA-binding KH domain-containing protein) (Uncharacterized protein At1g51580) (Uncharacterized protein F19C24.19) (Uncharacterized protein F5D21.23),RNA-binding KH domain-containing protein DISRUPTION PHENOTYPE: Floral organ defects such as reproductive-to-perianth organ transformation and loss of floral determinacy. {ECO:0000269|PubMed:15310842}. FUNCTION: Functions in floral reproductive organ identity in the third whorl and floral determinacy specification by specifically promoting the processing of AGAMOUS (AG) pre-mRNA. Functions in association with HUA1 and HUA2. {ECO:0000269|PubMed:15310842}. 93693,67115,66556,94704,90239 KH domain-containing protein HEN4 (Protein HUA ENHANCER 4),At1g51580 (RNA-binding KH domain-containing protein) (Uncharacterized protein At1g51580) (Uncharacterized protein F19C24.19) (Uncharacterized protein F5D21.23),RNA-binding KH domain-containing protein nuclear speck [GO:0016607]; RNA binding [GO:0003723]; cell differentiation [GO:0030154]; maintenance of floral organ identity [GO:0048497]; mRNA processing [GO:0006397]; positive regulation of flower development [GO:0009911],RNA binding [GO:0003723],nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; specification of floral organ identity [GO:0010093] DEVELOPMENTAL STAGE: Expressed in inflorescence meristem during flower development at least until stage 6 of development. {ECO:0000269|PubMed:15310842}. locus:2017612;,locus:2144761;,locus:2173378; AT5G64390,AT1G51580,AT5G09560 KH domain-containing protein Os09g0498600 protein A0A0N7KR20,A0A0P0XNP1 A0A0N7KR20_ORYSJ,A0A0P0XNP1_ORYSJ Os09g0498600 OSNPB_090498600 ENOG411DUP7 PBB2,PBB1 Q7DLS1,O23710,F4KIN7,Q9LTY8,F4IWI5 PSB7B_ARATH,PSB7A_ARATH,F4KIN7_ARATH,Q9LTY8_ARATH,F4IWI5_ARATH Proteasome subunit beta type-7-B (EC 3.4.25.1) (20S proteasome beta subunit B-2) (Proteasome component FC) (Proteasome subunit beta type-2),Proteasome subunit beta type-7-A (EC 3.4.25.1) (20S proteasome beta subunit B-1) (Proteasome component FA) (Proteasome component FB) (Proteasome subunit beta type-2),20S proteasome beta subunit PBB2,Uncharacterized protein,N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 29617,29555,28959,17030,28897 Proteasome subunit beta type-7-B (EC 3.4.25.1) (20S proteasome beta subunit B-2) (Proteasome component FC) (Proteasome subunit beta type-2),Proteasome subunit beta type-7-A (EC 3.4.25.1) (20S proteasome beta subunit B-1) (Proteasome component FA) (Proteasome component FB) (Proteasome subunit beta type-2),20S proteasome beta subunit PBB2,Uncharacterized protein,N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603],proteasome core complex [GO:0005839]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2168718;,locus:2086681;,locus:4515103142; AT5G40580,AT3G27430,AT3G27415 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Proteasome subunit beta type (EC 3.4.25.1),Os05g0187000 protein (Fragment) Q9LST8,A0A0N7KK97 Q9LST8_ORYSJ,A0A0N7KK97_ORYSJ OsPBB1 Os05g0187000 OJ1097_A12.2 OsJ_17385 OSNPB_050187000,Os05g0187000 OSNPB_050187000 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. ENOG411DUP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411DUP1 BGAL9,BGAL8 Q9SCV3,Q9SCV4,F4IIQ3,A0A1P8AZB4,F4IUQ7 BGAL9_ARATH,BGAL8_ARATH,F4IIQ3_ARATH,A0A1P8AZB4_ARATH,F4IUQ7_ARATH Beta-galactosidase 9 (Lactase 9) (EC 3.2.1.23),Beta-galactosidase 8 (Lactase 8) (EC 3.2.1.23) (Protein AR782),Beta-galactosidase (EC 3.2.1.23) ARA:AT2G32810-MONOMER;,ARA:AT2G28470-MONOMER; 3.2.1.23 99199,93210,92566,77061,96515 Beta-galactosidase 9 (Lactase 9) (EC 3.2.1.23),Beta-galactosidase 8 (Lactase 8) (EC 3.2.1.23) (Protein AR782),Beta-galactosidase (EC 3.2.1.23) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975],integral component of membrane [GO:0016021]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Ubiquitous, with higher expression levels in siliques. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:17466346}.,TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:17466346}. locus:2046452;,locus:2056623; AT2G32810,AT2G28470 beta-galactosidase Beta-galactosidase 15 (Lactase 15) (EC 3.2.1.23),Beta-galactosidase 6 (Lactase 6) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23),Os03g0255100 protein (Fragment) Q0INM3,Q10NX8,B7EDJ0,A0A0N7KGY6 BGA15_ORYSJ,BGAL6_ORYSJ,B7EDJ0_ORYSJ,A0A0N7KGY6_ORYSJ Os12g0429200 LOC_Os12g24170,Os03g0255100 LOC_Os03g15020,Os03g0255100 OSNPB_030255100 FUNCTION: Releases galactose by hydrolysis of plant cell wall galactose-containing polysaccharides such as galacto-xyloglucan, pectic galactan and galactan (in vitro). {ECO:0000269|PubMed:12723614}. ENOG411DUP0 CHLH,GUN5 Q9FNB0,A8MR05 CHLH_ARATH,A8MR05_ARATH Magnesium-chelatase subunit ChlH, chloroplastic (Mg-chelatase subunit H) (EC 6.6.1.1) (ABA-binding protein) (Mg-protoporphyrin IX chelatase subunit ChlH) (Protein CONDITIONAL CHLORINA) (Protein GENOMES UNCOUPLED 5) (Protein RAPID TRANSPIRATION IN DETACHED LEAVES 1),Magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) DISRUPTION PHENOTYPE: Pale-green phenotype with low survival rates during de-etiolation and severe embryonic lethality when homozygous. Chli1 and chli2 double mutants are albino. {ECO:0000269|PubMed:11172074, ECO:0000269|PubMed:19363094}. Light-sensitive reduction of chlorophyll accumulation.,cch mutant shows strong ABA insensitivity than wild-type in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The mutant also shows weak ABA insensitivity in germination and growth after germination.,cch1-1 is paler than gun5-1.,lhcb6 cch double mutant shows ABA insensitivity than wild-type in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening and the strength of the ABA insensitive phenotypes is comparable to that of the cch mutant stronger than that of the lhcb6 single mutant and lhcb1 lhcb6 double mutant. Pale green-J. Chory-2001 FUNCTION: Multifunctional protein involved in chlorophyll synthesis, plastid-to-nucleus retrograde signaling and abscisic acid (ABA) perception. In chlorophyll synthesis, catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. The reaction takes place in two steps, with an ATP-dependent activation followed by an ATP-dependent chelation step. In addition to its function in the Mg-chelatase enzyme, is required for the plastid-to-nucleus retrograde signaling. The plastid-to-nucleus signal plays an important role in the coordinated expression of both nuclear- and chloroplast-localized genes that encode photosynthesis-related proteins. Has a role in mediating ABA signaling in stomatal guard cells and during seed germination. Binds ABA and is a positive regulator of ABA signaling. {ECO:0000269|PubMed:11172074, ECO:0000269|PubMed:17051210, ECO:0000269|PubMed:19363094, ECO:0000269|PubMed:19535472, ECO:0000269|PubMed:20543028, ECO:0000269|PubMed:21562844, ECO:0000269|PubMed:23011401}. MISCELLANEOUS: Plants silencing CHLH show significant ABA-insensitive phenotypes in seed germination, post-germination growth arrest by ABA and ABA-induced promotion of stomatal closure and inhibition of stomatal opening. In contrast, plants over-expressing ABAR display ABA-hypersensitive phenotypes (PubMed:17051210). {ECO:0000305|PubMed:17051210}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. MetaCyc:AT5G13630-MONOMER; 6.6.1.1 153574,139994 Magnesium-chelatase subunit ChlH, chloroplastic (Mg-chelatase subunit H) (EC 6.6.1.1) (ABA-binding protein) (Mg-protoporphyrin IX chelatase subunit ChlH) (Protein CONDITIONAL CHLORINA) (Protein GENOMES UNCOUPLED 5) (Protein RAPID TRANSPIRATION IN DETACHED LEAVES 1),Magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; magnesium chelatase complex [GO:0010007]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; magnesium chelatase activity [GO:0016851]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979],magnesium chelatase activity [GO:0016851]; chlorophyll biosynthetic process [GO:0015995] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:17051210}. locus:2173234; AT5G13630 chelatase subunit Magnesium-chelatase subunit ChlH, chloroplastic (Mg-chelatase subunit H) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlH),Os03g0323200 protein (Fragment),Os07g0656500 protein (Fragment) Q10M50,A0A0P0VWS8,A0A0N7KH66,A0A0P0VWW1,A0A0P0XAG6 CHLH_ORYSJ,A0A0P0VWS8_ORYSJ,A0A0N7KH66_ORYSJ,A0A0P0VWW1_ORYSJ,A0A0P0XAG6_ORYSJ CHLH Os03g0323200 LOC_Os03g20700,Os03g0323200 OSNPB_030323200,Os07g0656500 OSNPB_070656500 FUNCTION: Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. The reaction takes place in two steps, with an ATP-dependent activation followed by an ATP-dependent chelation step. May be involved in the plastid-to-nucleus retrograde signaling. {ECO:0000269|PubMed:22226678}. ENOG411DUP3 AHA4,AHA11 Q9SU58,Q9LV11 PMA4_ARATH,PMA11_ARATH ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4),ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump 11) Slightly shorter roots and inflorescence stems; Sensitive to salt stress; Heterozygotes: Intermediate salt sensitive phenotype-J. Harper-2001 FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses (By similarity). {ECO:0000250}. ARA:AT3G47950-MONOMER;,ARA:AT5G62670-MONOMER; 3.6.3.6 105718,105123 ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4),ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump 11) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; metal ion binding [GO:0046872]; ATP biosynthetic process [GO:0006754]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; metal ion binding [GO:0046872]; ATP biosynthetic process [GO:0006754] locus:2097895;,locus:2172244; AT3G47950,AT5G62670 Cation_ATPase_N Plasma membrane ATPase (EC 3.6.3.6),Os02g0325300 protein,Plasma membrane ATPase (EC 3.6.3.6) (Fragment),Os12g0638700 protein (Fragment),Os02g0313900 protein (Fragment) Q8L6I1,Q8L6I2,Q8L6I3,A0A0P0VIF0,A0A0P0X3D0,A0A0P0YCW0,A0A0P0W1N1,A0A0P0VI58 Q8L6I1_ORYSJ,Q8L6I2_ORYSJ,Q8L6I3_ORYSJ,A0A0P0VIF0_ORYSJ,A0A0P0X3D0_ORYSJ,A0A0P0YCW0_ORYSJ,A0A0P0W1N1_ORYSJ,A0A0P0VI58_ORYSJ a3 LOC_Os12g44150 Os12g0638700 OSNPB_120638700,a2 Os07g0191200 OSJNBb0003E08.32 OSNPB_070191200,a1 OSJNBa0022C08.15 LOC_Os03g48310 Os03g0689300 OSNPB_030689300,Os02g0325300 OSNPB_020325300,Os07g0191200 OSNPB_070191200,Os12g0638700 OSNPB_120638700,Os03g0689300 OSNPB_030689300,Os02g0313900 OSNPB_020313900 ENOG411DUP2 KIN12A,KIN12B,KIN12F,KINESIN-12B Q9LDN0,Q8L7Y8,F4JDI6,A0A1I9LR98,F4J464 KN12A_ARATH,KN12B_ARATH,KN12F_ARATH,A0A1I9LR98_ARATH,F4J464_ARATH Kinesin-like protein KIN-12A (Phragmoplast-associated kinesin-related protein 1) (AtPAKRP1),Kinesin-like protein KIN-12B (Phragmoplast-associated kinesin-related protein 1-like protein) (AtPAKRP1L),Kinesin-like protein KIN-12F,Kinesin motor family protein,Kinesin-like protein DISRUPTION PHENOTYPE: No visible phenotype. Kin12a and kin12b double mutant display defective pollen grains leading to the production of fewer seeds. {ECO:0000269|PubMed:15258761, ECO:0000269|PubMed:17720869}. FUNCTION: Plus-end directed kinesin-like motor enzyme that plays a critical role in the organization of phragmoplast microtubules during cytokinesis. Constitutes a signaling module in association with serine/threonine-protein kinase TIO that is required to support phragmoplast expansion and cell-plate growth in plant cells. Binds microtubules in an ATP-sensitive manner. {ECO:0000269|PubMed:10898978, ECO:0000269|PubMed:17720869}.,FUNCTION: Plus-end directed kinesin-like motor enzyme that plays a critical role in the organization of phragmoplast microtubules during cytokinesis. Constitutes a signaling module in association with serine/threonine-protein kinase TIO that is required to support phragmoplast expansion and cell-plate growth in plant cells. {ECO:0000269|PubMed:17720869}. ARA:GQT-1781-MONOMER;,ARA:GQT-1251-MONOMER; R-ATH-6811434;R-ATH-983189; 144632,146612,125113,118902,108292 Kinesin-like protein KIN-12A (Phragmoplast-associated kinesin-related protein 1) (AtPAKRP1),Kinesin-like protein KIN-12B (Phragmoplast-associated kinesin-related protein 1-like protein) (AtPAKRP1L),Kinesin-like protein KIN-12F,Kinesin motor family protein,Kinesin-like protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; male meiosis cytokinesis [GO:0007112]; microgametogenesis [GO:0055046]; microtubule-based movement [GO:0007018]; phragmoplast microtubule organization [GO:0080175],kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2129455;,locus:2088065;,locus:2087650; AT4G14150,AT3G23670,AT3G20150 Kinesin motor domain domain containing protein expressed Kinesin-like protein KIN-12C,Kinesin-like protein KIN-12A (OsKinesin-12A) (Phragmoplast-associated kinesin-related protein 1) (OsPAKRP1),Kinesin-like protein KIN-12B (OsKinesin-12B),Os04g0442800 protein (Fragment),Os11g0581000 protein Q5W6L9,Q7XKR9,Q6K765,Q0JCY9,A0A0P0Y3Q5 KN12C_ORYSJ,KN12A_ORYSJ,KN12B_ORYSJ,Q0JCY9_ORYSJ,A0A0P0Y3Q5_ORYSJ KIN12C Os03g0587200 LOC_Os03g39020 OsJ_11583 OSJNBa0010D22.30 OSJNBb0085A04.1,KIN12A PAKRP1 Os04g0350300 LOC_Os04g28260 OsJ_14379 OSJNBa0038P21.12,KIN12B Os02g0489800 LOC_Os02g28850 OsJ_06785 OSJNBa0048K16.12,Os04g0442800 Os04g0442800 OSNPB_040442800,Os11g0581000 OSNPB_110581000 FUNCTION: Plus-end directed kinesin-like motor enzyme that plays a critical role in the organization of phragmoplast microtubules during cytokinesis. {ECO:0000250|UniProtKB:Q9LDN0}. ENOG411DUP9 NAD9 Q95748 NDUS3_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 (EC 1.6.5.3) (EC 1.6.99.3) (NADH dehydrogenase subunit 9) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:ATMG00070-MONOMER;MetaCyc:ATMG00070-MONOMER; 1.6.5.3; 1.6.99.3 22880 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 (EC 1.6.5.3) (EC 1.6.99.3) (NADH dehydrogenase subunit 9) mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137] ATMG00070 NADH dehydrogenase subunit 9 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 (EC 1.6.5.3) (EC 1.6.99.3) (NADH dehydrogenase subunit 9),NADH dehydrogenase subunit 9,Os12g0422971 protein (Fragment) Q35322,Q7JAI4,A0A0P0Y9J6 NDUS3_ORYSJ,Q7JAI4_ORYSJ,A0A0P0Y9J6_ORYSJ NAD9,nad9,Os12g0422971 OSNPB_120422971 FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ENOG411DUP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA methionine synthase NA NA NA NA NA NA NA ENOG411E6TT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha-amylase trypsin Alpha-amylase /trypsin inhibitor (Os07g0222000 protein) (Putative hageman factor inhibitor) Q8GVI3 Q8GVI3_ORYSJ P0592C06.119 Os07g0222000 OSNPB_070222000 ENOG411E6TE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0389500 protein) (cDNA clone:J013055E03, full insert sequence) Q338P4 Q338P4_ORYSJ LOC_Os10g25060 Os10g0389500 OSNPB_100389500 ENOG411E6TD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone Nuclear transcription factor Y subunit B-1 (CCAAT-binding transcription factor subunit NF-YB1) (OsNF-YB-1) Q6Z348 NFYB1_ORYSJ NFYB1 Os02g0725900 LOC_Os02g49410 B1121A12.5 OJ1124_G07.28 FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}. MISCELLANEOUS: Probably not a component of a NF-Y/HAP transcription factor complex. Shows impaired association with NF-YA/HAP2 and CAAT motif binding. ENOG411E6TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6TA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E9UN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os09g0331100 protein A0A0P0XKR2 A0A0P0XKR2_ORYSJ Os09g0331100 OSNPB_090331100 ENOG411E9UC F7J8_260,BASIC PROLINE-RICH PROTEIN3 Q9LFA8,A0A1P8B9S1,F4K804 Q9LFA8_ARATH,A0A1P8B9S1_ARATH,F4K804_ARATH GPI-anchored protein (Uncharacterized protein F7J8_260),GPI-anchored protein 48901,42561,51704 GPI-anchored protein (Uncharacterized protein F7J8_260),GPI-anchored protein microtubule associated complex [GO:0005875]; plasmodesma [GO:0009506] locus:2150144; AT5G01280 NA NA NA NA NA NA NA NA ENOG411E9UD SBT3.12 F4JJH5 SBT3C_ARATH Subtilisin-like protease SBT3.12 (EC 3.4.21.-) (Subtilase subfamily 3 member 12) (AtSBT3.12) 3.4.21.- 81507 Subtilisin-like protease SBT3.12 (EC 3.4.21.-) (Subtilase subfamily 3 member 12) (AtSBT3.12) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252] locus:505006504; AT4G21326 Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411E60G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSFK Q940K8,F4JUX3 Q940K8_ARATH,F4JUX3_ARATH Elongation factor P (EF-P) family protein (Uncharacterized protein At4g26310) (Uncharacterized protein At4g26310; T25K17.120),Elongation factor P (EF-P) family protein 28686,29329 Elongation factor P (EF-P) family protein (Uncharacterized protein At4g26310) (Uncharacterized protein At4g26310; T25K17.120),Elongation factor P (EF-P) family protein cytoplasm [GO:0005737]; translation elongation factor activity [GO:0003746] locus:2136804; AT4G26310 Elongation factor Os03g0806400 protein A0A0P0W4J3 A0A0P0W4J3_ORYSJ Os03g0806400 OSNPB_030806400 ENOG411DSFM U1A Q39244 RU1A_ARATH U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) FUNCTION: Involved in nuclear pre-mRNA splicing (By similarity). Seems to not be involved in polyadenylation. {ECO:0000250, ECO:0000269|PubMed:7556097}. R-ATH-72163; 28074 U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; U1 snRNP [GO:0005685]; snRNA stem-loop binding [GO:0035614]; U1 snRNA binding [GO:0030619]; mRNA splicing, via spliceosome [GO:0000398] locus:2061976; AT2G47580 U1 small nuclear ribonucleoprotein U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) Q0DKM4 RU1A_ORYSJ Os05g0154800 LOC_Os05g06280 OsJ_17170 FUNCTION: Involved in nuclear pre-mRNA splicing. {ECO:0000250}. ENOG411DSFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A13 (Alpha-expansin-13) (OsEXP13) (OsEXPA13) (OsaEXPa1.13) Q4PR52 EXP13_ORYSJ EXPA13 EXP13 Os02g0267200 LOC_Os02g16730 OsJ_06183 P0693E08.4 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DSFG APRR7,PRR7 Q93WK5,A0A1P8BCB0 APRR7_ARATH,A0A1P8BCB0_ARATH Two-component response regulator-like APRR7 (Pseudo-response regulator 7),Pseudo-response regulator 7 DISRUPTION PHENOTYPE: Insensitive to the effect of sucrose on the circadian period. {ECO:0000269|PubMed:24153186}. The prr7 mutant phenotype in Rc was more dramatic in the phyA-101 background especially in the range from 0.1 to 10 ;mol·m-2·s-1. However in FRc phyA prr7 double mutant seedlings were indistinguishable from phyA seedlings.,Cotyledon expansion was reduced in the mutant with respect to the wild type in response to Rc.,Mutant seedlings did not have a long-hypocotyl phenotype when grown under continuous white light with a fluence rate of 150 ;mol·m-2·s-1.,Mutant seedlings were 1 to 2 mm taller than wild-type seedlings at all fluence rates >0.1 ;mol·m-2.s-1 Rc an effect that indicates reduced responsiveness to light of this wavelength.,Sensitivity to FRc also was reduced in the mutant with respect to the wild type.,double mutant shows dramatic and more than additive period lengthening in the light and becomes arrhythmic in constant darkness. Fails both to maintain an oscillation after entrainment to thermocycles and to reset its clock in response to cold pulses. Long hypocotyl; Narrow cotyledons-P. Quail-2003 FUNCTION: Transcriptional repressor of CCA1 and LHY, and positive regulator of LWD1 and LWD2 expression. Represses the expression of other clock proteins and master regulators of plant growth, development and response to abiotic stress. Involved in the positive and negative feedback loops of the circadian clock. Controls photoperiodic flowering response and temperature compensation. Expression of several members of the ARR-like family is controlled by circadian rhythm. APRR9, APRR7, and APRR5 coordinately act on the upstream region of the target genes to repress their expression from noon until midnight. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. {ECO:0000269|PubMed:11100772, ECO:0000269|PubMed:14563930, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:21098730, ECO:0000269|PubMed:21357491, ECO:0000269|PubMed:23027938, ECO:0000269|PubMed:23808423, ECO:0000269|PubMed:24153186}. MISCELLANEOUS: Regulated at the level of mRNA maturation and alternative splicing by SKIP (PubMed:22942380). The expression of APRR9, APRR7, and APRR5 requires the presence of LWD1 and/or LWD2, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491). {ECO:0000305|PubMed:21357491, ECO:0000305|PubMed:22942380}. 79663,63284 Two-component response regulator-like APRR7 (Pseudo-response regulator 7),Pseudo-response regulator 7 mitochondrion [GO:0005739]; nucleus [GO:0005634]; DNA binding [GO:0003677]; circadian rhythm [GO:0007623]; negative regulation of transcription, DNA-templated [GO:0045892]; phosphorelay signal transduction system [GO:0000160]; red or far-red light signaling pathway [GO:0010017]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; phosphorelay signal transduction system [GO:0000160] locus:2151206; AT5G02810 Two-component response regulator-like NA NA NA NA NA NA NA ENOG411DSFX C7A10.890 O23234 O23234_ARATH At4g36470 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At4g36470) (Uncharacterized protein C7A10.890) ARA:AT4G36470-MONOMER; 41985 At4g36470 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At4g36470) (Uncharacterized protein C7A10.890) S-adenosylmethionine-dependent methyltransferase activity [GO:0008757] locus:2115400; AT4G36470 S-adenosyl-L-methionine carboxyl methyltransferase family protein Os01g0701700 protein (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase-like) (cDNA clone:002-148-C09, full insert sequence),Os01g0700300 protein Q5N8J5,A0A0P0V734 Q5N8J5_ORYSJ,A0A0P0V734_ORYSJ Os01g0701700 Os01g0701700 OSNPB_010701700 P0047E11.26 P0421H07.2,Os01g0700300 OSNPB_010700300 ENOG411DSFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain-containing protein NAC domain-containing protein 68 (ONAC068) (OsNAC4) Q52QH4 NAC68_ORYSJ NAC068 NAC4 Os01g0816100 LOC_Os01g60020 B1148D12.1 OSJNBa0085D07.44 FUNCTION: Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. ENOG411E609 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0484700 protein A0A0P0Y2N4 A0A0P0Y2N4_ORYSJ Os11g0484700 OSNPB_110484700 ENOG411DSF4 Q9CA68 GDL31_ARATH GDSL esterase/lipase At1g74460 (EC 3.1.1.-) (Extracellular lipase At1g74460) ARA:AT1G74460-MONOMER; 3.1.1.- 40696 GDSL esterase/lipase At1g74460 (EC 3.1.1.-) (Extracellular lipase At1g74460) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2019155; AT1G74460 GDSL esterase lipase Os06g0229400 protein A0A0P0WUU7 A0A0P0WUU7_ORYSJ Os06g0229400 OSNPB_060229400 ENOG411EBA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EBA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411EBA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411EBA2 Q9FM88,Q9LTV2 FBD25_ARATH,FBD8_ARATH Putative FBD-associated F-box protein At5g56430,Putative FBD-associated F-box protein At3g12840 41176,20664 Putative FBD-associated F-box protein At5g56430,Putative FBD-associated F-box protein At3g12840 locus:2161063; AT5G56430,AT3G12840 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EBA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF389) NA NA NA NA NA NA NA ENOG411EBA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 Os11g0249600 protein Q0ITJ0 Q0ITJ0_ORYSJ Os11g0249600 Os11g0249600 OSNPB_110249600 ENOG411EBA1 F4KEN8 F4KEN8_ARATH Uncharacterized protein 50716 Uncharacterized protein locus:2152410; AT5G45850 Protein of unknown function (DUF688) NA NA NA NA NA NA NA ENOG411EBA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myosin N-terminal SH3-like domain Os05g0537200 protein (Fragment) Q0DGE2 Q0DGE2_ORYSJ Os05g0537200 Os05g0537200 OSNPB_050537200 ENOG411EBA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein Os06g0623200 protein C7J4E7 C7J4E7_ORYSJ Os06g0623200 Os06g0623200 OSNPB_060623200 ENOG411EBAF GA20OX3 Q39112 GAOX3_ARATH Gibberellin 20 oxidase 3 (EC 1.14.11.-) (GA 20-oxidase 3) (Gibberellin C-20 oxidase 3) FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. MetaCyc:AT5G07200-MONOMER; 1.14.11.- 43437 Gibberellin 20 oxidase 3 (EC 1.14.11.-) (GA 20-oxidase 3) (Gibberellin C-20 oxidase 3) gibberellin 20-oxidase activity [GO:0045544]; metal ion binding [GO:0046872]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to light stimulus [GO:0009416]; unidimensional cell growth [GO:0009826] DEVELOPMENTAL STAGE: Expressed in developing siliques 3-13 days after pollination. {ECO:0000269|PubMed:15927942}. TISSUE SPECIFICITY: Expressed at high level in developing siliques. Detected in seeds, roots, leaves and inflorescences. In seeds, specifically detected at the outer layer of the outer integument. {ECO:0000269|PubMed:15927942, ECO:0000269|PubMed:18069939, ECO:0000269|PubMed:7630935}. locus:2182875; AT5G07200 Gibberellin 20-oxidase NA NA NA NA NA NA NA ENOG411EBAG VPS35C A8R7K9 VP35C_ARATH Vacuolar protein sorting-associated protein 35C (Vesicle protein sorting 35C) FUNCTION: Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. Also involved in the efficient sorting of seed storage proteins (By similarity). The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane. {ECO:0000250}. 89405 Vacuolar protein sorting-associated protein 35C (Vesicle protein sorting 35C) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; multivesicular body [GO:0005771]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; retrograde transport, endosome to Golgi [GO:0042147] locus:2080888; AT3G51310 Vacuolar protein sorting-associated protein 35 NA NA NA NA NA NA NA ENOG411EBAD OFP3 Q9LVL4 OFP3_ARATH Transcription repressor OFP3 (Ovate family protein 3) (AtOFP3) FUNCTION: Transcriptional repressor that may regulate multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP3 have no visible phenotype. {ECO:0000305|PubMed:21886836}. 33440 Transcription repressor OFP3 (Ovate family protein 3) (AtOFP3) nucleus [GO:0005634]; DNA binding [GO:0003677]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] locus:2161198; AT5G58360 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411EBAE CASP2,CASP4 Q9CAX3,Q9FFZ7 CASP2_ARATH,CASP4_ARATH Casparian strip membrane protein 2 (AtCASP2),Casparian strip membrane protein 4 (AtCASP4) FUNCTION: Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion. {ECO:0000269|PubMed:21593871}. 21482,21112 Casparian strip membrane protein 2 (AtCASP2),Casparian strip membrane protein 4 (AtCASP4) Casparian strip [GO:0048226]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536]; protein homodimerization activity [GO:0042803]; cell wall modification [GO:0042545]; cell-cell junction assembly [GO:0007043] locus:2080742;,locus:2160747; AT3G11550,AT5G06200 cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion NA NA NA NA NA NA NA ENOG411EBAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EBAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411EBAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0539600 protein,Os11g0539700 protein A0A0P0Y381,A0A0P0Y2Y9 A0A0P0Y381_ORYSJ,A0A0P0Y2Y9_ORYSJ Os11g0539600 OSNPB_110539600,Os11g0539700 OSNPB_110539700 ENOG411EBAJ NAP1;4 F4JEI8 NAP1D_ARATH Nucleosome assembly protein 1;4 (AtNAP1;4) (Nucleosome/chromatin assembly factor group A4) FUNCTION: May modulate chromatin structure by regulation of nucleosome assembly/disassembly. {ECO:0000250}. 36418 Nucleosome assembly protein 1;4 (AtNAP1;4) (Nucleosome/chromatin assembly factor group A4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Expressed in the root segment covering the apical end of the differentiation zone, the elongation zone of the root and the mature pollen within the anthers of open flowers. {ECO:0000269|PubMed:19228338}. locus:2091591; AT3G13782 nucleosome assembly NA NA NA NA NA NA NA ENOG411EBAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3474) Os07g0417200 protein (Fragment) Q0D6Z2 Q0D6Z2_ORYSJ Os07g0417200 Os07g0417200 OSNPB_070417200 ENOG411EBAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0831700 protein) (cDNA clone:J013052G24, full insert sequence),Os03g0831700 protein (Fragment) Q851A1,A0A0P0W544 Q851A1_ORYSJ,A0A0P0W544_ORYSJ OSJNBb0027B08.4 LOC_Os03g61620 Os03g0831700 OsJ_13237 OSJNBa0078D06.23 OSNPB_030831700,Os03g0831700 OSNPB_030831700 ENOG411EBAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HEAT repeat NA NA NA NA NA NA NA ENOG411EBAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EBAW LECRK55,LECRK57,LECRK56,LECRK58,LecRK-V.6 Q96285,Q9ZR79,Q9LEA3,Q9M1Z9,A0A1I9LPX0 LRK55_ARATH,LRK57_ARATH,LRK56_ARATH,LRK58_ARATH,A0A1I9LPX0_ARATH L-type lectin-domain containing receptor kinase V.5 (Arabidopsis thaliana lectin-receptor kinase a1) (Ath.lecRK1) (AthlecRK-a1) (LecRK-V.5) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase V.7 (Arabidopsis thaliana lectin-receptor kinase a3) (AthlecRK-a3) (LecRK-V.7) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase V.6 (Arabidopsis thaliana lectin-receptor kinase a2) (AthlecRK-a2) (LecRK-V.6) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase V.8 (LecRK-V.8) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici but enhanced resistance to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}.,DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici and to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms. {ECO:0000269|PubMed:25083911}. FUNCTION: Confers resistance to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici, but confers susceptibility to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}.,FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}. 2.7.11.1 74436,73537,59313,70375,50026 L-type lectin-domain containing receptor kinase V.5 (Arabidopsis thaliana lectin-receptor kinase a1) (Ath.lecRK1) (AthlecRK-a1) (LecRK-V.5) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase V.7 (Arabidopsis thaliana lectin-receptor kinase a3) (AthlecRK-a3) (LecRK-V.7) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase V.6 (Arabidopsis thaliana lectin-receptor kinase a2) (AthlecRK-a2) (LecRK-V.6) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase V.8 (LecRK-V.8) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; negative regulation of defense response to bacterium [GO:1900425]; protein autophosphorylation [GO:0046777]; regulation of stomatal closure [GO:0090333],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed at low levels in stems, leaves, flowers and siliques. {ECO:0000269|PubMed:8637009}. locus:2097493;,locus:2097533;,locus:2097528;,locus:2080407; AT3G59700,AT3G59740,AT3G59730,AT3G59750 Legume lectin domain NA NA NA NA NA NA NA ENOG411EBAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EBAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: jumonji domain containing 6 NA NA NA NA NA NA NA ENOG411EBAS SDR,SAG13 Q9ZW03,Q9ZW13,Q9ZW19,Q9ZW04,Q9ZW20,P0DKI3,Q9ZW18,F4HQN3 TRNH3_ARATH,TRNH6_ARATH,TRNHC_ARATH,TRNH4_ARATH,TRNHD_ARATH,TRNH1_ARATH,SAG13_ARATH,F4HQN3_ARATH Tropinone reductase homolog At2g29150 (EC 1.1.1.-),Tropinone reductase homolog At2g29290 (EC 1.1.1.-),Tropinone reductase homolog At2g29360 (EC 1.1.1.-),Tropinone reductase homolog At2g29170 (EC 1.1.1.-),Tropinone reductase homolog At2g29370 (EC 1.1.1.-),Tropinone reductase homolog At1g07440 (EC 1.1.1.-),Senescence-associated protein 13 (Tropinone reductase homolog SAG13) (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein FUNCTION: Enantiospecific reductase active on cyclic monoterpenes and small flexible lipophilic carbonyls. No activity with tropinone, nitrogen-containing tropinone analogs, tropine or pseudotropine as substrate. {ECO:0000269|PubMed:24583623}.,FUNCTION: Oxidoreductase active on cyclic ketones, but not on tropinone or nortropinone. {ECO:0000269|PubMed:18221363}.,FUNCTION: Unspecific reductase providing both diastereomeric alcohols from the prochiral ketones. Active on cyclic monoterpenes and small flexible lipophilic carbonyls. No activity with tropinone, nitrogen-containing tropinone analogs, tropine or pseudotropine as substrate. {ECO:0000269|PubMed:24583623}. ARA:AT2G29150-MONOMER;,ARA:AT2G29290-MONOMER;,ARA:AT2G29360-MONOMER;,ARA:AT2G29370-MONOMER;,ARA:AT2G29350-MONOMER; 1.1.1.- 28706,28406,29185,28999,28721,28332,28820,18744 Tropinone reductase homolog At2g29150 (EC 1.1.1.-),Tropinone reductase homolog At2g29290 (EC 1.1.1.-),Tropinone reductase homolog At2g29360 (EC 1.1.1.-),Tropinone reductase homolog At2g29170 (EC 1.1.1.-),Tropinone reductase homolog At2g29370 (EC 1.1.1.-),Tropinone reductase homolog At1g07440 (EC 1.1.1.-),Senescence-associated protein 13 (Tropinone reductase homolog SAG13) (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein oxidoreductase activity [GO:0016491],alcohol dehydrogenase (NAD) activity [GO:0004022]; aging [GO:0007568]; defense response to insect [GO:0002213] DEVELOPMENTAL STAGE: Expressed 2 days before visible senescence began (PubMed:9617813). Detected from day 24 (PubMed:18978034). {ECO:0000269|PubMed:18978034, ECO:0000269|PubMed:9617813}. locus:2043037;,locus:2043052;,locus:2043167;,locus:2043197;,locus:2043152;,locus:2043177; AT2G29150,AT2G29290,AT2G29360,AT2G29170,AT2G29370,AT1G07440,AT2G29350 tropinone reductase NA NA NA NA NA NA NA ENOG411EBAP O04191 O04191_ARATH At2g39870/T5I7.17 (Expressed protein) (Uncharacterized protein At2g39870) 36701 At2g39870/T5I7.17 (Expressed protein) (Uncharacterized protein At2g39870) locus:2061237; AT2G39870 NA NA NA NA NA NA NA NA ENOG411EBAZ TPS01,TPS07,TPS08,TPS09,TPS05,TPS15,TPS26 O23651,O65434,O65435,Q8L7G4,O22184,Q9LS76,Q9C8E3,A0A1P8B581,A0A1P8APJ6,A0A1P8B0J1 TPS01_ARATH,TPS07_ARATH,TPS08_ARATH,TPS09_ARATH,TPS05_ARATH,TPS15_ARATH,TPS26_ARATH,A0A1P8B581_ARATH,A0A1P8APJ6_ARATH,A0A1P8B0J1_ARATH Terpenoid synthase 1 (AtTPS01) (EC 4.2.3.-),Putative terpenoid synthase 7 (AtTPS07) (EC 4.2.3.-),Terpenoid synthase 8 (AtTPS08) (EC 4.2.3.-),Terpenoid synthase 9 (AtTPS09) (EC 4.2.3.-),Putative terpenoid synthase 5 (AtTPS05) (EC 4.2.3.-),Terpenoid synthase 15 (AtTPS15) (EC 4.2.3.-),Terpenoid synthase 26 (AtTPS26) (EC 4.2.3.-),Terpenoid synthase superfamily protein,Terpenoid cyclases/Protein prenyltransferases superfamily protein FUNCTION: Catalyzes the synthesis of the semivolatile diterpene rhizatalene A. {ECO:0000269|PubMed:23512856}.,FUNCTION: Involved in terpene biosynthesis in roots. Possesses diterpene (C20) synthase activity in vitro. Does not seem to be involved in sesquiterpene (C15) biosynthesis. {ECO:0000269|PubMed:27933080}.,FUNCTION: Involved in terpene biosynthesis in roots. Possesses sesquiterpene (C15) synthase activity and diterpene (C20) synthase activity in vitro. {ECO:0000269|PubMed:27933080}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT4G15870-MONOMER;,ARA:AT4G20200-MONOMER;,ARA:AT4G20230-MONOMER;,ARA:AT2G23230-MONOMER;,ARA:AT3G29190-MONOMER;,ARA:AT1G66020-MONOMER; 4.2.3.- 69620,70023,69095,70437,68487,69668,69345,71776,49896,70180 Terpenoid synthase 1 (AtTPS01) (EC 4.2.3.-),Putative terpenoid synthase 7 (AtTPS07) (EC 4.2.3.-),Terpenoid synthase 8 (AtTPS08) (EC 4.2.3.-),Terpenoid synthase 9 (AtTPS09) (EC 4.2.3.-),Putative terpenoid synthase 5 (AtTPS05) (EC 4.2.3.-),Terpenoid synthase 15 (AtTPS15) (EC 4.2.3.-),Terpenoid synthase 26 (AtTPS26) (EC 4.2.3.-),Terpenoid synthase superfamily protein,Terpenoid cyclases/Protein prenyltransferases superfamily protein cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpene biosynthetic process [GO:0046246]; terpenoid biosynthetic process [GO:0016114],cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpenoid biosynthetic process [GO:0016114],magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; metabolic process [GO:0008152],magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; transferase activity [GO:0016740]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed exclusively in siliques. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Predominantly expressed in roots but also in stems, leaves and flowers. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Predominantly expressed in siliques but also in stems. {ECO:0000269|PubMed:12566586}. locus:2130859;,locus:2120417;,locus:2120337;,locus:2058608;,locus:2094827;,locus:2013810; AT4G15870,AT4G20200,AT4G20210,AT4G20230,AT2G23230,AT3G29190,AT1G66020 terpene cyclase C1 domain-containing protein NA NA NA NA NA NA NA ENOG411EBAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os02g0793400 protein (Fragment) A0A0P0VQL7 A0A0P0VQL7_ORYSJ Os02g0793400 OSNPB_020793400 ENOG411EBAY Q9FN10,A0A1P8BGA0 Q9FN10_ARATH,A0A1P8BGA0_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (At5g67430) (N-acetyltransferase hookless1-like protein),Acyl-CoA N-acyltransferases (NAT) superfamily protein 43176,36018 Acyl-CoA N-acyltransferases (NAT) superfamily protein (At5g67430) (N-acetyltransferase hookless1-like protein),Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity [GO:0008080]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; protein acetylation [GO:0006473],N-acetyltransferase activity [GO:0008080] locus:2158172; AT5G67430 Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411DY0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA vacuolar iron transporter Vacuolar iron transporter homolog 5 (Protein NODULIN-LIKE 5) Q7XTL7 VITH5_ORYSJ Os04g0686800 LOC_Os04g59020 OsJ_16707 OSJNBa0070M12.11 FUNCTION: Probable vacuolar iron transporter that may be involved in the regulation of iron distribution throughout the plant. {ECO:0000250}. ENOG411DY0H Q9FMQ1 PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial 91918 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2177028; AT5G12100 Pentatricopeptide repeat-containing protein Os08g0402600 protein (Fragment) Q0J5U1 Q0J5U1_ORYSJ Os08g0402600 Os08g0402600 OSNPB_080402600 ENOG411DY0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0105800 protein (Protein kinase family protein, putative, expressed) (cDNA clone:J023073D05, full insert sequence) Q2QYU9 Q2QYU9_ORYSJ Os12g0105800 LOC_Os12g01510 Os12g0105800 OSNPB_120105800 ENOG411DY0J O48696 O48696_ARATH AAA-type ATPase family protein (F3I6.23 protein) 57396 AAA-type ATPase family protein (F3I6.23 protein) ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA replication [GO:0006260] locus:2032432; AT1G24290 MgsA AAA+ ATPase C terminal NA NA NA NA NA NA NA ENOG411DY0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0365200 protein (cDNA clone:J023033B18, full insert sequence) Q75IT5 Q75IT5_ORYSJ OSJNBb0111K12.6 Os05g0365200 OSNPB_050365200 P0683B02.11 ENOG411DY0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os03g0324600 protein) Q10M36 Q10M36_ORYSJ Os03g0324600 LOC_Os03g20840 Os03g0324600 OsJ_10673 OSNPB_030324600 ENOG411DY0C UGP3 F4IY62 UGPA3_ARATH UTP--glucose-1-phosphate uridylyltransferase 3, chloroplastic (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 3) Complete loss of sulfolipid accumulation; No other phenotypes detected-K. Saito-2009 FUNCTION: Involved in the biosynthesis of sulfolipids in the chloroplast. Catalyzes the first committed step in sulfolipid biosynthesis. Converts glucose 1-phosphate to UDP-glucose, the precursor of the polar head of sulfolipid. In addition to glucose 1-phosphate, can use galactose 1-phosphate, but with much lower activity. No uridyltransferase activity with other hexose monophosphates. Specific for UTP and cannot use ATP, CTP, and GTP. {ECO:0000269|PubMed:19286968}. 2.7.7.9 99043 UTP--glucose-1-phosphate uridylyltransferase 3, chloroplastic (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 3) chloroplast [GO:0009507]; cytosol [GO:0005829]; uridylyltransferase activity [GO:0070569]; UTP:glucose-1-phosphate uridylyltransferase activity [GO:0003983]; nucleotide-sugar biosynthetic process [GO:0009226]; sulfolipid biosynthetic process [GO:0046506]; UDP-glucose metabolic process [GO:0006011] locus:2082038; AT3G56040 NA Os05g0468600 protein A0A0P0WNJ6 A0A0P0WNJ6_ORYSJ Os05g0468600 OSNPB_050468600 ENOG411DY0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyl-CpG binding domain Os04g0613800 protein (cDNA clone:J013107M16, full insert sequence) (cDNA clone:J023036C24, full insert sequence),Os04g0613800 protein (Fragment) Q0JA65,A0A0P0WF27 Q0JA65_ORYSJ,A0A0P0WF27_ORYSJ Os04g0613800 Os04g0613800 OsJ_24762 OSNPB_040613800,Os04g0613800 OSNPB_040613800 ENOG411DY0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphoglycerate kinase Phosphoglycerate kinase (EC 2.7.2.3) (Fragment) A0A0P0XUM4 A0A0P0XUM4_ORYSJ Os10g0442100 OSNPB_100442100 ENOG411DY0D MXM12.5 F4K856 F4K856_ARATH SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein 134837 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein ATP binding [GO:0005524]; endonuclease activity [GO:0004519]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2142753; AT5G07810 domain-containing protein Os07g0598300 protein (Fragment),DNA-dependent ATPase A-like protein (Os07g0598300 protein),Os07g0598300 protein Q0D4X8,Q6ZJE4,A0A0P0X8K8 Q0D4X8_ORYSJ,Q6ZJE4_ORYSJ,A0A0P0X8K8_ORYSJ Os07g0598300 Os07g0598300 OSNPB_070598300,OJ1579_C03.20-2 Os07g0598300 OSNPB_070598300,Os07g0598300 OSNPB_070598300 ENOG411DY0F Q9LFM4,F4JWH3 Q9LFM4_ARATH,F4JWH3_ARATH At5g11330 (FAD/NAD(P)-binding oxidoreductase family protein) (Uncharacterized protein At5g11330/F2I11_220) (Uncharacterized protein F2I11_220),FAD/NAD(P)-binding oxidoreductase family protein 45764,29502 At5g11330 (FAD/NAD(P)-binding oxidoreductase family protein) (Uncharacterized protein At5g11330/F2I11_220) (Uncharacterized protein F2I11_220),FAD/NAD(P)-binding oxidoreductase family protein FAD binding [GO:0071949]; monooxygenase activity [GO:0004497]; secondary metabolite biosynthetic process [GO:0044550],FAD binding [GO:0071949]; oxidoreductase activity [GO:0016491] locus:2147982; AT5G11330 FAD binding domain NA NA NA NA NA NA NA ENOG411DY0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon Reticulon-like protein Q8H4K6 Q8H4K6_ORYSJ OJ1351_C05.119 Os07g0142000 OsJ_23054 OSNPB_070142000 ENOG411DY0X VIL1,VRN5 Q9LHF5,A0A1I9LRN6 VIL1_ARATH,A0A1I9LRN6_ARATH VIN3-like protein 1 (Protein VERNALIZATION 5),Fibronectin type III domain-containing protein DISRUPTION PHENOTYPE: Impaired vernalization response with incomplete repression of FLC during and after cold exposure, due to a reduction in vernalization-induced histone H3 deacetylation and methylation (e.g. H3K4me3 and H3K27me3). Delayed flowering in short days (SD=8 hours light/16 hours dark) conditions but not in long days (LD=16 hours light/8 hours dark); enhanced FLM levels dur to an enhance level of chromatin acetylation. {ECO:0000269|PubMed:17114575, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:18854416}. FUNCTION: Involved in both the vernalization and photoperiod pathways by regulating expression of the related floral repressors FLOWERING LOCUS C (FLC) and FLOWERING LOCUS M (FLM). Together with VIN3, required during vernalization for the modifications of FLC and FLM chromatin that are associated with an epigenetically silenced state (e.g. chromatin modifications, histone deacetylation, and trimethylated H3 'Lys-4' H3K4me3 and 'Lys-27' H3K27me3) and with acquisition of competence to flower. Promotes flowering in short days (SD=8 hours light/16 hours dark). Associates dynamically at FLC locus; during vernalization, binds to specific sites, but when in warm conditions, distributed along the whole locus. {ECO:0000269|PubMed:17114575, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:18854416}. 66851,66638 VIN3-like protein 1 (Protein VERNALIZATION 5),Fibronectin type III domain-containing protein chromatin silencing complex [GO:0005677]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; flower development [GO:0009908]; histone methylation [GO:0016571]; negative regulation of gene expression, epigenetic [GO:0045814]; positive regulation of histone H3-K27 methylation [GO:0061087]; positive regulation of histone H3-K4 methylation [GO:0051571]; positive regulation of histone methylation [GO:0031062]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; short-day photoperiodism [GO:0048572]; short-day photoperiodism, flowering [GO:0048575]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048] TISSUE SPECIFICITY: Accumulates in shoot and root apices, and in leaves. {ECO:0000269|PubMed:17174094}. locus:2094859; AT3G24440 protein VERNALIZATION INSENSITIVE 3-like Fibronectin type III domain containing protein, expressed (Os12g0533500 protein) (cDNA clone:J013158L10, full insert sequence) Q2QPD5 Q2QPD5_ORYSJ Os12g0533500 LOC_Os12g34850 OSNPB_120533500 ENOG411DY0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os06g0157000 protein (Putative esterase) Q0DEF1 Q0DEF1_ORYSJ KMK0024M20.13 Os06g0157000 OSNPB_060157000 ENOG411DY0Q NAC090 Q9FMR3 NAC90_ARATH NAC domain-containing protein 90 (ANAC090) 26722 NAC domain-containing protein 90 (ANAC090) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2176372; AT5G22380 NAC domain-containing protein 'putative no apical meristem (NAM) protein, PF02365 (NAC transcription factor 12) (Os05g0442700 protein) (cDNA clone:001-119-G11, full insert sequence),NAC-domain containing protein 90, putative, expressed (Os11g0686700 protein),NAC transcription factor-like protein (Os01g0862800 protein) (cDNA clone:J023087C18, full insert sequence) Q6F2M8,Q2QZH7,Q94CW0 Q6F2M8_ORYSJ,Q2QZH7_ORYSJ,Q94CW0_ORYSJ NAC12 Os05g0442700 B1110B01.14 OSJNBa0020H14.9 OSNPB_050442700,Os11g0686700 LOC_Os11g45950 OsJ_34775 OSNPB_110686700,Os01g0862800 Os01g0862800 OsJ_04163 OSNPB_010862800 P0423B08.14 ENOG411DY0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF688) Os05g0470900 protein (Fragment) A0A0N7KKY2 A0A0N7KKY2_ORYSJ Os05g0470900 OSNPB_050470900 ENOG411DY0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Raffinose synthase or seed imbibition protein Sip1 NA NA NA NA NA NA NA ENOG411DY0T CRF3 Q9FK12 CRF3_ARATH Ethylene-responsive transcription factor CRF3 (Protein CYTOKININ RESPONSE FACTOR 3) FUNCTION: Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. 40100 Ethylene-responsive transcription factor CRF3 (Protein CYTOKININ RESPONSE FACTOR 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; ethylene-activated signaling pathway [GO:0009873]; leaf development [GO:0048366]; transcription factor import into nucleus [GO:0042991]; transcription, DNA-templated [GO:0006351] locus:2154272; AT5G53290 Transcription factor NA NA NA NA NA NA NA ENOG411DY0W F4IMT1 F4IMT1_ARATH MYB family transcription factor 46857 MYB family transcription factor locus:2064432; AT2G30380 Plant protein of unknown function (DUF641) NA NA NA NA NA NA NA ENOG411DY09 ABCB3,ABCB5,ABCB11,ABCB12 Q9SYI2,Q9SYI3,Q9FWX7,Q9FWX8,A0A1P8ANT3,A0A1P8B7I4,A0A1P8B4H4 AB3B_ARATH,AB5B_ARATH,AB11B_ARATH,AB12B_ARATH,A0A1P8ANT3_ARATH,A0A1P8B7I4_ARATH,A0A1P8B4H4_ARATH ABC transporter B family member 3 (ABC transporter ABCB.3) (AtABCB3) (P-glycoprotein 3) (Putative multidrug resistance protein 3),ABC transporter B family member 5 (ABC transporter ABCB.5) (AtABCB5) (P-glycoprotein 5) (Putative multidrug resistance protein 5),ABC transporter B family member 11 (ABC transporter ABCB.11) (AtABCB11) (Multidrug resistance protein 8) (P-glycoprotein 11),ABC transporter B family member 12 (ABC transporter ABCB.12) (AtABCB12) (Multidrug resistance protein 16) (P-glycoprotein 12),p-glycoprotein 12,p-glycoprotein 5,p-glycoprotein 3 ARA:AT4G01820-MONOMER;,ARA:AT4G01830-MONOMER;,ARA:AT1G02520-MONOMER;,ARA:AT1G02530-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 133234,133083,137667,136774,104288,107953,104365 ABC transporter B family member 3 (ABC transporter ABCB.3) (AtABCB3) (P-glycoprotein 3) (Putative multidrug resistance protein 3),ABC transporter B family member 5 (ABC transporter ABCB.5) (AtABCB5) (P-glycoprotein 5) (Putative multidrug resistance protein 5),ABC transporter B family member 11 (ABC transporter ABCB.11) (AtABCB11) (Multidrug resistance protein 8) (P-glycoprotein 11),ABC transporter B family member 12 (ABC transporter ABCB.12) (AtABCB12) (Multidrug resistance protein 16) (P-glycoprotein 12),p-glycoprotein 12,p-glycoprotein 5,p-glycoprotein 3 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; auxin efflux transmembrane transporter activity [GO:0010329]; basipetal auxin transport [GO:0010540],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; auxin efflux transmembrane transporter activity [GO:0010329]; basipetal auxin transport [GO:0010540],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2141350;,locus:2141365;,locus:2196145;,locus:2196135; AT4G01820,AT4G01830,AT1G02520,AT1G02530 ABC transporter B family member NA NA NA NA NA NA NA ENOG411DY01 Q8GY81 Q8GY81_ARATH Curculin-like (Mannose-binding) lectin family protein (Uncharacterized protein At1g16900/F17F16_15) 47271 Curculin-like (Mannose-binding) lectin family protein (Uncharacterized protein At1g16900/F17F16_15) carbohydrate binding [GO:0030246] locus:4010713447; AT1G16905 B_lectin Os01g0958200 protein (Protein kinase-like) (cDNA clone:002-127-B03, full insert sequence) Q5JK65 Q5JK65_ORYSJ Os01g0958200 OJ1294_F06.27 OSNPB_010958200 P0401G10.1 ENOG411DY00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1644) Os07g0419800 protein (Fragment),Os07g0419800 protein (cDNA clone:001-045-A12, full insert sequence) Q0D6Y1,Q8LHI5 Q0D6Y1_ORYSJ,Q8LHI5_ORYSJ Os07g0419800 Os07g0419800 OSNPB_070419800,P0684A03.102-1 OJ1123_B01.131-1 Os07g0419800 OsJ_23991 OSNPB_070419800 ENOG411DY02 Q9FKR3 PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730 67895 Pentatricopeptide repeat-containing protein At5g38730 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2166610; AT5G38730 Pentatricopeptide repeat-containing protein Os02g0827900 protein (UDP-glucoronosyl/UDP-glucosyl transferase family protein-like) Q6K7Q1 Q6K7Q1_ORYSJ P0452F04.33-1 Os02g0827900 OSNPB_020827900 ENOG411DY05 CDT1A Q9SJW9 CDT1A_ARATH CDT1-like protein a, chloroplastic (AtCDT1a) FUNCTION: Member of the pre-replication complex. Component of the plastid division machinery. Promotes polyloidization and regulates endoreduplication. Involved in the coordination of cell and plastid division. {ECO:0000269|PubMed:15316110, ECO:0000269|PubMed:15928083}. 63740 CDT1-like protein a, chloroplastic (AtCDT1a) chloroplast [GO:0009507]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; DNA polymerase binding [GO:0070182]; protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; chloroplast organization [GO:0009658]; chromosome organization [GO:0051276]; DNA replication [GO:0006260]; DNA replication checkpoint [GO:0000076]; gametophyte development [GO:0048229] TISSUE SPECIFICITY: Expressed in proliferating (e.g. shoot and root apical meristems, organ primordia) and endoreplicating cells (e.g. guard cells and stomatal lineage, developing trichomes). {ECO:0000269|PubMed:15316110}. locus:2042541; AT2G31270 CDT1-like protein a OSJNBa0001M07.6 protein (OSJNBb0003A12.4 protein) (Os04g0185100 protein) (cDNA clone:001-132-F01, full insert sequence) Q7X7L0 Q7X7L0_ORYSJ OSJNBa0001M07.6 Os04g0185100 OSJNBb0003A12.4 OSNPB_040185100 ENOG411DY07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein ycf73 (ORF249),Os09g0331801 protein Q37066,A0A0P0XLV4 YCF73_ORYSJ,A0A0P0XLV4_ORYSJ ycf73-A LOC_Osp1g01070; ycf73-B,Os09g0331801 OSNPB_090331801 ENOG411DY06 Q8S8P6 PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630 70895 Pentatricopeptide repeat-containing protein At2g32630 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2060226; AT2G32630 Pentatricopeptide repeat-containing protein Os07g0671200 protein (Putative crp1(Chloroplast RNA processing 1) protein),Os09g0267300 protein Q8H473,A3BWP1 Q8H473_ORYSJ,A3BWP1_ORYSJ P0470D12.117 Os07g0671200 OSNPB_070671200,Os09g0267300 OsJ_28601 OSNPB_090267300 ENOG411E924 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE403 protein (Os04g0531200 protein) A3AVU3 A3AVU3_ORYSJ Os04g0531200 OsCLE403 OsJ_15566 OSNPB_040531200 ENOG411E926 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411DTVH Q8H114 Q8H114_ARATH Appr-1-p processing enzyme family protein (Uncharacterized protein At2g40600) 27478 Appr-1-p processing enzyme family protein (Uncharacterized protein At2g40600) cytosol [GO:0005829] locus:2061923; AT2G40600 A1pp Os06g0696900 protein,Os08g0139500 protein,Os03g0336500 protein (Fragment),Os06g0536333 protein A0A0P0X0G3,A0A0P0XBR6,A0A0P0VY29,A0A0P0WXM0 A0A0P0X0G3_ORYSJ,A0A0P0XBR6_ORYSJ,A0A0P0VY29_ORYSJ,A0A0P0WXM0_ORYSJ Os06g0696900 OSNPB_060696900,Os08g0139500 OSNPB_080139500,Os03g0336500 OSNPB_030336500,Os06g0536333 OSNPB_060536333 ENOG411DTVI Q7GB61,O04333,F4IDR6,Q0WUY1,A0A1P8B335,F4INW4,F4IDR5 Q7GB61_ARATH,O04333_ARATH,F4IDR6_ARATH,Q0WUY1_ARATH,A0A1P8B335_ARATH,F4INW4_ARATH,F4IDR5_ARATH At1g04280 (F19P19.28 protein) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein At2g30630),p-loop containing nucleoside triphosphate hydrolases superfamily protein,Uncharacterized protein At1g04280 (p-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein 54512,60733,59092,59977,45056,63155,59854 At1g04280 (F19P19.28 protein) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein At2g30630),p-loop containing nucleoside triphosphate hydrolases superfamily protein,Uncharacterized protein At1g04280 (p-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; kinase activity [GO:0016301],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; kinase activity [GO:0016301],membrane [GO:0016020]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; kinase activity [GO:0016301] locus:2018304;,locus:2054497;,locus:2033143; AT2G30630,AT1G06750,AT1G04280 Zeta toxin Os05g0508800 protein (cDNA clone:J013031O22, full insert sequence),H1flk, putative, expressed (Os03g0628800 protein) (cDNA clone:J013123D13, full insert sequence) Q6L4X2,Q10GG7 Q6L4X2_ORYSJ,Q10GG7_ORYSJ Os05g0508800 Os05g0508800 OsJ_19143 OSJNBb0108E17.8 OSNPB_050508800,Os03g0628800 LOC_Os03g43010 Os03g0628800 OsJ_11810 OSNPB_030628800 ENOG411DTVM A0A1P8B5I9,A0A1P8B5K1,F4JRX3 A0A1P8B5I9_ARATH,A0A1P8B5K1_ARATH,F4JRX3_ARATH DNA topoisomerase, type IA, core 136649,141098,141564 DNA topoisomerase, type IA, core chromosome [GO:0005694]; DNA binding [GO:0003677]; DNA topoisomerase type I activity [GO:0003917]; DNA topological change [GO:0006265] locus:2128101; AT4G31210 DNA Topoisomerase Os06g0281400 protein (Putative DNA topoisomerase I) Q5VMY4 Q5VMY4_ORYSJ Os06g0281400 OSJNBa0063H02.18 OSNPB_060281400 P0456E06.44 ENOG411DTVF CTEXP F4II29 F4II29_ARATH Kinase family with ARM repeat domain-containing protein 86046 Kinase family with ARM repeat domain-containing protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2064821; AT2G40730 inactive serine threonine-protein kinase scy1-like Os01g0819900 protein (Putative kinase-like protein splice variant 1),Os01g0819900 protein (Putative kinase-like protein splice variant 1) (cDNA clone:J013105B05, full insert sequence) Q5QLZ4,Q5QLZ5 Q5QLZ4_ORYSJ,Q5QLZ5_ORYSJ OJ1529_G03.21-2 Os01g0819900 OSNPB_010819900,OJ1529_G03.21-1 Os01g0819900 OsJ_19897 OSNPB_010819900 ENOG411DTVD BAC2 Q9CA93 BAC2_ARATH Mitochondrial arginine transporter BAC2 (Mitochondrial basic amino acid carrier 2) (AtMBAC2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20172963}. FUNCTION: Mitochondrial arginine transporter that catalyzes the counter-exchange of arginine with lysine, ornithine, arginine, histidine and citrulline. Substrate preference in reconstituted proteoliposomes is arginine > homoarginine > citrulline > histidine > lysine > ornithine. May be involved in the delivery of arginine, released from seed reserves, to mitochondrial arginase and the export of ornithine. May contribute to proline accumulation in response to hyperosmotic stress. {ECO:0000269|PubMed:12517306, ECO:0000269|PubMed:12631327, ECO:0000269|PubMed:16730327, ECO:0000269|PubMed:20172963}. ARA:AT1G79900-MONOMER;MetaCyc:AT1G79900-MONOMER; R-ATH-352230; 32252 Mitochondrial arginine transporter BAC2 (Mitochondrial basic amino acid carrier 2) (AtMBAC2) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; arginine transmembrane transporter activity [GO:0015181]; L-histidine transmembrane transporter activity [GO:0005290]; L-lysine transmembrane transporter activity [GO:0015189]; L-ornithine transmembrane transporter activity [GO:0000064]; acyl carnitine transport [GO:0006844]; hyperosmotic response [GO:0006972]; L-arginine import [GO:0043091]; mitochondrial transport [GO:0006839]; proline biosynthetic process [GO:0006561] TISSUE SPECIFICITY: High expression in flowers, stamens, petals and pollen. Expressed in roots, leaves and stems. {ECO:0000269|PubMed:12517306, ECO:0000269|PubMed:12631327, ECO:0000269|PubMed:20172963}. locus:2017884; AT1G79900 Mitochondrial carnitine acylcarnitine carrier protein Os01g0225000 protein Q0JPF8 Q0JPF8_ORYSJ Os01g0225000 Os01g0225000 OSNPB_010225000 ENOG411DTVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein, expressed (Os03g0855500 protein) Q75IQ5 Q75IQ5_ORYSJ Os03g0855500 LOC_Os03g63850 Os03g0855500 Os03g63850 OSNPB_030855500 ENOG411DTVY SPP O81062 SIP_ARATH Signal peptide peptidase (AtSPP) (EC 3.4.23.-) (Intramembrane protease) (IMP) (IMPAS) DISRUPTION PHENOTYPE: Mostly lethal due to a male gametophytic defect. {ECO:0000269|PubMed:19168645}. no homozygotes were recovered from the heterozygous mutant mutant pollen appeared normal by Alexander stain but failed to germinate the organization of the male germ unit (MGU) is disrupted the vegetative nuclei were malformed with displacement of the two sperm cells or the entire MGU were mislocalized to the pollen periphery. Male gametophyte defective; Rare embryo defective (inferred)-D. Schnell-2009 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm (By similarity). Plays a critical role in the development and function of the reproductive tissues, especially in pollen development. {ECO:0000250, ECO:0000269|PubMed:19168645}. 3.4.23.- 38339 Signal peptide peptidase (AtSPP) (EC 3.4.23.-) (Intramembrane protease) (IMP) (IMPAS) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; aspartic-type endopeptidase activity [GO:0004190]; pollen development [GO:0009555]; pollen germination [GO:0009846] DEVELOPMENTAL STAGE: Expressed in the shoot meristem and root epidermal cells in germinating seeds. At the reproductive stage, expressed in the whole shoot apex. {ECO:0000269|PubMed:18067581}. TISSUE SPECIFICITY: Ubiquitous with the highest expression in emerging leaves, roots, and floral tissues (at the protein level). Highly detected in pollen. {ECO:0000269|PubMed:18067581, ECO:0000269|PubMed:19168645}. locus:2056936; AT2G03120 Minor histocompatibility antigen Signal peptide peptidase 1 (OsSPP1) (EC 3.4.23.-) (Intramembrane protease 1) (IMP) (IMPAS),Signal peptide peptidase 2 (OsSPP2) (EC 3.4.23.-) (Intramembrane protease 2) (IMP) (IMPAS),Os05g0436400 protein (Fragment),Os02g0825600 protein (Fragment),Os05g0436400 protein Q6ZGL9,B9FJ61,A0A0P0WMV4,A0A0P0VRQ1,A0A0N7KKU6,A0A0N7KGD1 SIP1_ORYSJ,SIP2_ORYSJ,A0A0P0WMV4_ORYSJ,A0A0P0VRQ1_ORYSJ,A0A0N7KKU6_ORYSJ,A0A0N7KGD1_ORYSJ SPP1 Os02g0117400 LOC_Os02g02530 OJ1442_E05.26 OsJ_05128,SPP2 Os05g0436400 LOC_Os05g36070 OJ1058_F05.2 OsJ_18668 OSJNBb0088F07.14,Os05g0436400 OSNPB_050436400,Os02g0825600 OSNPB_020825600 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. {ECO:0000250}. ENOG411DTVR PAT13 Q94C49 ZDH18_ARATH Probable protein S-acyltransferase 13 (EC 2.3.1.225) (Probable palmitoyltransferase At4g22750) (Zinc finger DHHC domain-containing protein At4g22750) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.5}. ARA:GQT-2136-MONOMER; 2.3.1.225; 2.3.1.225 33548 Probable protein S-acyltransferase 13 (EC 2.3.1.225) (Probable palmitoyltransferase At4g22750) (Zinc finger DHHC domain-containing protein At4g22750) cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] AT4G22750 zinc finger S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q75HK0 Q75HK0_ORYSJ Os03g0804300 LOC_Os03g58960 Os03g0804300 OSJNBb0015I02.5 OSNPB_030804300 ENOG411DTVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Insulinase (Peptidase family M16) Os01g0711100 protein A0A0P0V776 A0A0P0V776_ORYSJ Os01g0711100 OSNPB_010711100 ENOG411DTVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Saposin-like type B region 2 Aspartic proteinase (EC 3.4.23.-),Os01g0290000 protein (Putative aspartic proteinase) (cDNA clone:J013071P15, full insert sequence) (cDNA clone:J023005B17, full insert sequence),Os01g0290000 protein (Fragment) P42211,Q9LGZ3,A0A0P0V1D7 ASPRX_ORYSJ,Q9LGZ3_ORYSJ,A0A0P0V1D7_ORYSJ RAP Os05g0137400 LOC_Os05g04630 OJ1127_B08.13,Os01g0290000 Os01g0290000 OsJ_01384 OSNPB_010290000 P0469E05.27,Os01g0290000 OSNPB_010290000 FUNCTION: Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles. {ECO:0000250}. ENOG411DTVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily 1-aminocyclopropane-1-carboxylate oxidase (1-aminocyclopropane-1-carboxylate oxidase, putative, expressed) (Os11g0186900 protein) (cDNA clone:001-127-C01, full insert sequence) Q53P53 Q53P53_ORYSJ Os11g0186900 LOC_Os11g08380 Os11g0186900 OsJ_33232 OSNPB_110186900 ENOG411DTVT Q9FN67 Y5133_ARATH BTB/POZ domain-containing protein At5g41330 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 50420 BTB/POZ domain-containing protein At5g41330 protein homooligomerization [GO:0051260]; protein ubiquitination [GO:0016567] locus:2177861; AT5G41330 domain-containing protein Os07g0419200 protein (Fragment) A0A0P0X601 A0A0P0X601_ORYSJ Os07g0419200 OSNPB_070419200 ENOG411DTV8 F4I8E9 F4I8E9_ARATH Transmembrane protein 61471 Transmembrane protein integral component of membrane [GO:0016021] locus:2026276; AT1G71110 NA Os01g0121300 protein Q5ZEM2 Q5ZEM2_ORYSJ Os01g0121300 OsJ_00179 OSNPB_010121300 P0684C01.11 ENOG411DTV9 Q9LS59 Q9LS59_ARATH TATA box-binding protein associated factor RNA polymerase I subunit C 98383 TATA box-binding protein associated factor RNA polymerase I subunit C locus:2095027; AT3G18310 NA Os09g0104700 protein,Expressed protein (Os03g0240400 protein) Q69KV2,Q10PB4 Q69KV2_ORYSJ,Q10PB4_ORYSJ Os09g0104700 OSJNBa0006G10.12 OSNPB_090104700 P0584D02.4,Os03g0240400 LOC_Os03g13720 OSNPB_030240400 ENOG411DTV2 F4I4A6,A0A1P8AV84 F4I4A6_ARATH,A0A1P8AV84_ARATH Nucleolar GTP-binding protein 1 FUNCTION: Involved in the biogenesis of the 60S ribosomal subunit. {ECO:0000256|PIRNR:PIRNR038919}. 78250,75092 Nucleolar GTP-binding protein 1 nucleolus [GO:0005730]; GTP binding [GO:0005525]; ribosome biogenesis [GO:0042254] locus:2012778; AT1G10300 Involved in the biogenesis of the 60S ribosomal subunit (By similarity) Os06g0195900 protein (Fragment),Os07g0110200 protein (Fragment) Q0DDV9,A0A0P0WTK2,A0A0P0X1R2 Q0DDV9_ORYSJ,A0A0P0WTK2_ORYSJ,A0A0P0X1R2_ORYSJ Os06g0195900 Os06g0195900 OSNPB_060195900,Os06g0195900 OSNPB_060195900,Os07g0110200 OSNPB_070110200 ENOG411DTV3 RPL13B,RPL13D,RPL13C,BBC1 P41127,Q9FF90,Q9SMT4,F4IWP7,A8MQA1 RL131_ARATH,RL133_ARATH,RL132_ARATH,F4IWP7_ARATH,A8MQA1_ARATH 60S ribosomal protein L13-1 (Protein BBC1 homolog),60S ribosomal protein L13-3,Putative 60S ribosomal protein L13-2,Breast basic conserved 1,60S ribosomal protein L13 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 23767,23485,23503,17748,23540 60S ribosomal protein L13-1 (Protein BBC1 homolog),60S ribosomal protein L13-3,Putative 60S ribosomal protein L13-2,Breast basic conserved 1,60S ribosomal protein L13 cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cytokinin [GO:0009735]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] DEVELOPMENTAL STAGE: Regulated during fruit maturation. {ECO:0000269|PubMed:8163191}. locus:2101283;,locus:2172863;,locus:2101328; AT3G49010,AT5G23900,AT3G48960 60S ribosomal protein L13 60S ribosomal protein L13 Q7XJB4,Q9LWS2 Q7XJB4_ORYSJ,Q9LWS2_ORYSJ Os03g0576700 LOC_Os03g37970 Os03g0576700 OsJ_11521 OSJNBa0008D12.6 OSNPB_030576700,Os06g0115500 OsJ_19902 OSJNBa0019F11.16 OSNPB_060115500 P0541H01.38 ENOG411DTV0 YUC8,YUC5,YUC9 Q9SVU0,Q9LKC0,O64489 YUC8_ARATH,YUC5_ARATH,YUC9_ARATH Probable indole-3-pyruvate monooxygenase YUCCA8 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA8),Probable indole-3-pyruvate monooxygenase YUCCA5 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA5) (Protein SUPPRESSOR OF ER 1),Probable indole-3-pyruvate monooxygenase YUCCA9 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA9) Wild type rosette. bri loss of function phenotype is suppressed.,elongated stems elongated hypocotyls resulted from elongated epidermal and cortex cells elongated pedicels resulted from elongated epidermal pavement cells and increased cortex cell numbers,altered leaf shape reduced fertilityelongated hypocotyl resulted from elongated epidermal and cortex cells elongated pedicel resulted from elongated epidermal pavement cells and increased cortex cell numbers,short siliques very few seeds elongated stems elongated hypocotyls resulted from elongated epidermal and cortex cells elongated pedicels resulted from elongated epidermal pavement cells and increased cortex cell numbers FUNCTION: Involved in auxin biosynthesis. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in roots. {ECO:0000269|PubMed:22025721}.,FUNCTION: Involved in auxin biosynthesis. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in roots. {ECO:0000269|PubMed:16126863, ECO:0000269|PubMed:22025721}.,FUNCTION: Involved in auxin biosynthesis. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in roots. PATHWAY: Plant hormone metabolism; auxin biosynthesis. 1.14.13.168 48110,47442,47402 Probable indole-3-pyruvate monooxygenase YUCCA8 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA8),Probable indole-3-pyruvate monooxygenase YUCCA5 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA5) (Protein SUPPRESSOR OF ER 1),Probable indole-3-pyruvate monooxygenase YUCCA9 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA9) flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851]; brassinosteroid mediated signaling pathway [GO:0009742]; regulation of auxin biosynthetic process [GO:0010600]; response to cytokinin [GO:0009735],flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851],flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851] TISSUE SPECIFICITY: Expressed in root tips and in hydathodes. Expressed in root vasculature and quiescent center, but not in the meristematic zone of the root tip. {ECO:0000269|PubMed:19805390}.,TISSUE SPECIFICITY: Predominantly expressed in roots and young vegetative tissues, while it was under detectable levels in reproductive tissues, such as inflorescence stems, pedicels, and floral buds. {ECO:0000269|PubMed:16126863}. locus:2117783;,locus:2149524;,locus:2020250; AT4G28720,AT5G43890,AT1G04180 monooxygenase Flavin-containing monooxygenase (EC 1.-.-.-) Q7XP26 Q7XP26_ORYSJ Os04g0128900 Os04g0128900 B1340F09.23 OsJ_13624 OSJNBa0027H09.13 OSNPB_040128900 ENOG411DTV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase Os03g0135200 protein (Fragment) Q0DVD9 Q0DVD9_ORYSJ Os03g0135200 OSNPB_030135200 ENOG411DTV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-related protein MYBAS1 Q53NK6 MYBA1_ORYSJ MYBAS1 Os11g0700500 LOC_Os11g47460 OsJ_34832 FUNCTION: Transcription factor. {ECO:0000305}. ENOG411DTV7 NBP35 Q8H1Q2 NBP35_ARATH Cytosolic Fe-S cluster assembly factor NBP35 (Nucleotide binding protein 35) (AtNBP35) Homozygotes are embryo lethal,Homozygotes are embryo lethal. Embryo defective; Preglobular / Globular-M. Nakai-2009 FUNCTION: Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. Functions as Fe-S scaffold, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins. Essential for embryo development. {ECO:0000255|HAMAP-Rule:MF_03038, ECO:0000269|PubMed:18957412, ECO:0000269|PubMed:19084504}. MISCELLANEOUS: Although plant and algal NBP35 proteins lack the characteristic CXXC motif in the C-terminus, thought to be required for Fe-S cluster binding, they can bind a [4Fe-4S] cluster in the C-terminus. Also, in this linage, no CFD1 partner protein homolog as found in other eukaryotes can be found. {ECO:0000305|PubMed:18957412}. 37306 Cytosolic Fe-S cluster assembly factor NBP35 (Nucleotide binding protein 35) (AtNBP35) cytosol [GO:0005829]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ATP binding [GO:0005524]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; iron-sulfur cluster assembly [GO:0016226] locus:2157328; AT5G50960 Cytosolic Fe-S cluster assembly factor Os04g0485400 protein,Os04g0485400 protein (cDNA clone:J013156K04, full insert sequence),Os02g0601100 protein (Fragment) Q0JC90,B7F661,Q0DZS7 Q0JC90_ORYSJ,B7F661_ORYSJ,Q0DZS7_ORYSJ Os04g0485400 Os04g0485400 OSNPB_040485400,Os04g0485400 OSNPB_040485400,Os02g0601100 Os02g0601100 OSNPB_020601100 ENOG411DTV4 LCAT1 Q9FZI8 LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 (EC 2.3.1.-) ARA:AT1G27480-MONOMER; R-ATH-1483115;R-ATH-8964058; 2.3.1.- 48308 Lecithin-cholesterol acyltransferase-like 1 (EC 2.3.1.-) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; O-acyltransferase activity [GO:0008374]; lipid metabolic process [GO:0006629] locus:2015924; AT1G27480 Lecithin-cholesterol acyltransferase-like Lecithin:cholesterol acyltransferase family protein, expressed (Os03g0730000 protein) (cDNA clone:J023108I08, full insert sequence) Q10DG8 Q10DG8_ORYSJ LOC_Os03g52010 Os03g0730000 OsJ_12446 OSNPB_030730000 ENOG411DTV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDA1/CD39 (nucleoside phosphatase) family NA NA NA NA NA NA NA ENOG411EC8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EC8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) NA NA NA NA NA NA NA ENOG411EJEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EJEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein OSJNBa0043L09.24 protein (Os04g0635500 protein),OSJNBa0043L09.19 protein (Os04g0635100 protein) Q7XQS3,Q7XQS8 Q7XQS3_ORYSJ,Q7XQS8_ORYSJ Os04g0635500 Os04g0635500 OsJ_16310 OSJNBa0043L09.24 OSNPB_040635500,Os04g0635100 OSJNBa0043L09.19 OSNPB_040635100 ENOG411EJEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJEB P92563 M1330_ARATH Uncharacterized mitochondrial protein AtMg01330 (ORF107h) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene is not demonstrated. 14219 Uncharacterized mitochondrial protein AtMg01330 (ORF107h) mitochondrion [GO:0005739] locus:504954616; ATMG01330 Inherit from COG: subunit l NA NA NA NA NA NA NA ENOG411EJEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EJEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA polyprotein NA NA NA NA NA NA NA ENOG411EJEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os04g0508400 protein A0A0P0WC72 A0A0P0WC72_ORYSJ Os04g0508400 OSNPB_040508400 ENOG411DZD9 SMC5 Q9LFS8 SMC5_ARATH Structural maintenance of chromosomes protein 5 (Protein EMBRYO DEFECTIVE 2782) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:19737979}. Embryo defective; Preglobular-D. Meinke-2008 FUNCTION: Core component of the SMC5-SMC6 complex that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. {ECO:0000269|PubMed:19737979}. 121441 Structural maintenance of chromosomes protein 5 (Protein EMBRYO DEFECTIVE 2782) nucleus [GO:0005634]; plasmodesma [GO:0009506]; Smc5-Smc6 complex [GO:0030915]; ATP binding [GO:0005524]; double-strand break repair via homologous recombination [GO:0000724]; sister chromatid cohesion [GO:0007062] TISSUE SPECIFICITY: Expressed in seedlings, rosette leaves and floral buds. {ECO:0000269|PubMed:19737979}. locus:2146107; AT5G15920 Structural maintenance of chromosomes Os05g0596600 protein (Putative SMC5 protein) (cDNA clone:J023078H05, full insert sequence),Os11g0572900 protein,Os05g0596600 protein (Fragment),Os11g0577300 protein,Os11g0577350 protein Q5KQG5,A0A0P0Y3Q2,A0A0P0WRQ0,A0A0P0Y3J4,A0A0P0Y3J1 Q5KQG5_ORYSJ,A0A0P0Y3Q2_ORYSJ,A0A0P0WRQ0_ORYSJ,A0A0P0Y3J4_ORYSJ,A0A0P0Y3J1_ORYSJ Os05g0596600 Os05g0596600 OSJNBb0086G17.10 OSNPB_050596600,Os11g0572900 OSNPB_110572900,Os05g0596600 OSNPB_050596600,Os11g0577300 OSNPB_110577300,Os11g0577350 OSNPB_110577350 ENOG411DZD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os04g0415100 protein (Fragment) Q0JDB5 Q0JDB5_ORYSJ Os04g0415100 Os04g0415100 OSNPB_040415100 ENOG411DZD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DZD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate-induced protein 1 conserved region Os02g0756200 protein (Putative phi-1),Os02g0756200 protein (Putative phi-1) (cDNA clone:001-115-G05, full insert sequence) Q6Z680,Q6Z681 Q6Z680_ORYSJ,Q6Z681_ORYSJ P0627E03.37-2 Os02g0756200 P0471A11.1-2 OSNPB_020756200,P0627E03.37-1 P0471A11.1-1 Os02g0756200 OsJ_08445 OSNPB_020756200 ENOG411DZD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Poly(A) polymerase predicted RNA binding domain OSJNBb0016D16.18 protein (Os04g0588350 protein),Os01g0702900 protein Q7XN15,Q0JK16 Q7XN15_ORYSJ,Q0JK16_ORYSJ OSJNBb0016D16.18 Os04g0588350 OSNPB_040588350,Os01g0702900 Os01g0702900 OsJ_03164 OSNPB_010702900 ENOG411DZD2 Q6NQM0 Q6NQM0_ARATH At3g01800 (Putative ribosome recycling factor) (Ribosome recycling factor) 29172 At3g01800 (Putative ribosome recycling factor) (Ribosome recycling factor) mitochondrion [GO:0005739]; ribosomal large subunit binding [GO:0043023]; translation [GO:0006412] locus:2082309; AT3G01800 Ribosome recycling factor OSJNBa0076N16.8 protein (OSJNBa0084K20.10 protein) (Os04g0490400 protein) (cDNA clone:J023133F23, full insert sequence) Q7X8U6 Q7X8U6_ORYSJ Os04g0490400 Os04g0490400 OSJNBa0076N16.8 OSJNBa0084K20.10 OSNPB_040490400 ENOG411DZD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectate lyase N terminus Pectate lyase (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) (Fragment) Q0DEM8,A0A0P0WS98 Q0DEM8_ORYSJ,A0A0P0WS98_ORYSJ Os06g0144200 Os06g0144200 OSNPB_060144200,Os06g0144900 OSNPB_060144900 ENOG411DZD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS family transcription factor NA NA NA NA NA NA NA ENOG411DZD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os02g0567800 protein (Putative PrMC3) Q6YTH5 Q6YTH5_ORYSJ Os02g0567800 OSNPB_020567800 P0020D05.26 ENOG411DZDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-patch domain containing protein Os04g0512750 protein,Os04g0512775 protein,Os04g0512800 protein,Os04g0512700 protein A0A0P0WCK8,A0A0P0WCQ7,A0A0P0WCC4,A0A0P0WCH8 A0A0P0WCK8_ORYSJ,A0A0P0WCQ7_ORYSJ,A0A0P0WCC4_ORYSJ,A0A0P0WCH8_ORYSJ Os04g0512750 OSNPB_040512750,Os04g0512775 OSNPB_040512775,Os04g0512800 OSNPB_040512800,Os04g0512700 OSNPB_040512700 ENOG411DZDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expansin-like Expansin-like B1 (Expansin-related 1) (OsEXLB1) (OsEXPR1) (OsaEXPb3.1) Q850K7 EXLB1_ORYSJ EXLB1 EXPR1 Os07g0496250 LOC_Os07g31390 OJ1457_D07.118 OsJ_023376 ENOG411DZDJ EMB1006 Q9FGR7 PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280, chloroplastic (Protein EMBRYO DEFECTIVE 1006) Embryo defective; Globular-D. Meinke-2002 82173 Pentatricopeptide repeat-containing protein At5g50280, chloroplastic (Protein EMBRYO DEFECTIVE 1006) chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2157732; AT5G50280 Pentatricopeptide repeat-containing protein Os05g0294600 protein (cDNA clone:J013166J08, full insert sequence),Os05g0294600 protein (Fragment) Q0DJF1,A0A0P0WK85 Q0DJF1_ORYSJ,A0A0P0WK85_ORYSJ Os05g0294600 Os05g0294600 OsJ_17925 OSNPB_050294600,Os05g0294600 OSNPB_050294600 ENOG411DZDK DIR19 Q9C523 DIR19_ARATH Dirigent protein 19 (AtDIR19) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 20563 Dirigent protein 19 (AtDIR19) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2196282; AT1G58170 Disease resistance response protein Dirigent protein (Fragment) A0A0P0Y7F4 A0A0P0Y7F4_ORYSJ Os12g0174700 OSNPB_120174700 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411DZDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bifunctional monodehydroascorbate reductase and carbonic Os06g0610100 protein (Fragment),Os08g0470700 protein A0A0P0WYX6,A0A0N7KQ01 A0A0P0WYX6_ORYSJ,A0A0N7KQ01_ORYSJ Os06g0610100 OSNPB_060610100,Os08g0470700 OSNPB_080470700 ENOG411DZDI FLA7 Q9SJ81 FLA7_ARATH Fasciclin-like arabinogalactan protein 7 FUNCTION: May be a cell surface adhesion protein. 26846 Fasciclin-like arabinogalactan protein 7 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; membrane [GO:0016020]; plasma membrane [GO:0005886] locus:2049218; AT2G04780 fasciclin-like arabinogalactan protein Os09g0482780 protein,Os08g0502400 protein (Putative arabinogalactan protein) (cDNA clone:002-119-F09, full insert sequence) C7J6Y0,Q6ZFJ0 C7J6Y0_ORYSJ,Q6ZFJ0_ORYSJ Os09g0482780 OSNPB_090482780,Os08g0502400 Os08g0502400 OJ1345_D02.33 OJ1506_F01.5 OSNPB_080502400 ENOG411DZDF Q7Y230,A0A1P8B2A5,F4II10 Q7Y230_ARATH,A0A1P8B2A5_ARATH,F4II10_ARATH At2g40570 (Initiator tRNA phosphoribosyl transferase family protein) (Putative initiator tRNA phosphoribosyl-transferase),Initiator tRNA phosphoribosyl transferase family protein 58709,44768,52120 At2g40570 (Initiator tRNA phosphoribosyl transferase family protein) (Putative initiator tRNA phosphoribosyl-transferase),Initiator tRNA phosphoribosyl transferase family protein cytoplasm [GO:0005737]; transferase activity, transferring pentosyl groups [GO:0016763]; tRNA A64-2'-O-ribosylphosphate transferase activity [GO:0043399]; charged-tRNA amino acid modification [GO:0019988],tRNA A64-2'-O-ribosylphosphate transferase activity [GO:0043399]; charged-tRNA amino acid modification [GO:0019988] locus:2061863; AT2G40570 Initiator tRNA phosphoribosyl transferase Os06g0555500 protein (Putative initiator tRNA phosphoribosyl-transferase) (cDNA clone:002-108-F04, full insert sequence) (cDNA clone:J033091P04, full insert sequence) Q5Z9S3 Q5Z9S3_ORYSJ Os06g0555500 OSNPB_060555500 P0458E11.18 ENOG411DZDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein, expressed (Os11g0633800 protein) (cDNA clone:J013096K20, full insert sequence),Os11g0634100 protein,Os08g0227000 protein Q2R0S7,Q2R0S4,A0A0P0XD57 Q2R0S7_ORYSJ,Q2R0S4_ORYSJ,A0A0P0XD57_ORYSJ Os11g0633800 LOC_Os11g41560 Os11g0633800 OSNPB_110633800,Os11g0634100 LOC_Os11g41590 OsJ_32868 OSNPB_110634100,Os08g0227000 OSNPB_080227000 ENOG411DZDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRONE (Plant-specific Rop nucleotide exchanger) Os04g0559100 protein (Fragment) A0A0P0WDR5 A0A0P0WDR5_ORYSJ Os04g0559100 OSNPB_040559100 ENOG411DZDE AKRP Q05753 AKRP_ARATH Ankyrin repeat domain-containing protein, chloroplastic (AKRP) (Protein EMBRYO DEFECTIVE 2036) DISRUPTION PHENOTYPE: Plants show a developmental arrest of the embryos at the globular stage. {ECO:0000269|PubMed:17092312}. Embryo defective; Globular-D. Meinke-2002 FUNCTION: Involved in the initial differentiation of the proplastid during the embryo development and in plastid differentiation linked to cell differentiation, morphogenesis and organogenesis during the plant life cycle. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 48878 Ankyrin repeat domain-containing protein, chloroplastic (AKRP) (Protein EMBRYO DEFECTIVE 2036) chloroplast [GO:0009507] DEVELOPMENTAL STAGE: Highest expression occurs in four-day-old plants and declines as plants develop further. {ECO:0000269|PubMed:12232406}. TISSUE SPECIFICITY: Expressed mainly in chloroplast-containing tissues. Also detected in roots, stems, flower buds, developing siliques and dry seeds. {ECO:0000269|PubMed:12232406, ECO:0000269|PubMed:17092312}. locus:505006718; AT5G66055 Ankyrin repeat domain-containing protein Ankyrin repeat protein, chloroplast, putative, expressed (Os03g0135600 protein) (cDNA, clone: J065183G03, full insert sequence) Q10S45 Q10S45_ORYSJ Os03g0135600 LOC_Os03g04300 OSNPB_030135600 ENOG411DZDB Q9C8I1 Q9C8I1_ARATH Ubiquitin-conjugating enzyme family protein (Uncharacterized protein At1g51730) (Uncharacterized protein F19C24.6) 28706 Ubiquitin-conjugating enzyme family protein (Uncharacterized protein At1g51730) (Uncharacterized protein F19C24.6) polysome [GO:0005844]; cytoplasmic translation [GO:0002181] locus:2017532; AT1G51730 RWD domain-containing protein Os01g0558300 protein (RWD domain containing 1-like protein) (cDNA clone:J013001P15, full insert sequence) Q5JKR6 Q5JKR6_ORYSJ Os01g0558300 Os01g0558300 B1064G04.6 B1144D11.28 OSNPB_010558300 ENOG411DZDC Q9C9T6,A0A1P8AV69 Q9C9T6_ARATH,A0A1P8AV69_ARATH Putative RING zinc finger protein; 69105-67310 (RING/U-box superfamily protein),RING/U-box superfamily protein 40616,31221 Putative RING zinc finger protein; 69105-67310 (RING/U-box superfamily protein),RING/U-box superfamily protein locus:2027804; AT1G73760 zinc finger C3HC4 type domain containing protein expressed Os01g0692700 protein (Fragment) A0A0P0V6X3 A0A0P0V6X3_ORYSJ Os01g0692700 OSNPB_010692700 ENOG411DZDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase Os06g0589600 protein (Fragment) Q0DB97 Q0DB97_ORYSJ Os06g0589600 Os06g0589600 OSNPB_060589600 ENOG411DZDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os01g0519100 protein (cDNA clone:J023107G19, full insert sequence) Q8RZN0 Q8RZN0_ORYSJ Os01g0519100 B1003B09.14 B1168H06.8 OSNPB_010519100 ENOG411DZDX T4C21_80 Q9LZZ6 Q9LZZ6_ARATH At3g60670 (PLATZ transcription factor family protein) (Uncharacterized protein T4C21_80) 27745 At3g60670 (PLATZ transcription factor family protein) (Uncharacterized protein T4C21_80) locus:2101881; AT3G60670 PLATZ transcription factor NA NA NA NA NA NA NA ENOG411DZDY F4KII1 F4KII1_ARATH Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) 58549 Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) intracellular membrane-bounded organelle [GO:0043231]; transferase activity, transferring hexosyl groups [GO:0016758]; UDP-glycosyltransferase activity [GO:0008194]; metabolic process [GO:0008152] locus:2184570; AT5G24750 Inherit from KOG: UDP-Glycosyltransferase Os02g0210800 protein A0A0N7KEX0 A0A0N7KEX0_ORYSJ Os02g0210800 OSNPB_020210800 ENOG411DZDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glycosyltransferase NA NA NA NA NA NA NA ENOG411DZDW Q9C936,A0A1P8AU16 Q9C936_ARATH,A0A1P8AU16_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 38288-39393),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:GQT-2304-MONOMER; 36420,29766 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 38288-39393),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:2011506; AT1G52820 2OG-Fe(II) oxygenase superfamily Os05g0576500 protein A0A0P0WQW3 A0A0P0WQW3_ORYSJ Os05g0576500 OSNPB_050576500 ENOG411DZDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1637) Os03g0655100 protein A0A0N7KHR4 A0A0N7KHR4_ORYSJ Os03g0655100 OSNPB_030655100 ENOG411DZDU PBL21 Q9LDZ5 PBL21_ARATH Probable serine/threonine-protein kinase PBL21 (EC 2.7.11.1) (PBS1-like protein 21) (Protein ALTERED SEED GERMINATION 5) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 42257 Probable serine/threonine-protein kinase PBL21 (EC 2.7.11.1) (PBS1-like protein 21) (Protein ALTERED SEED GERMINATION 5) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2034344; AT1G20650 serine threonine-protein kinase PBS1-like NA NA NA NA NA NA NA ENOG411DZDR O64633 O64633_ARATH At2g45530 (Expressed protein) (RING/U-box superfamily protein) (Uncharacterized protein At2g45530) 26629 At2g45530 (Expressed protein) (RING/U-box superfamily protein) (Uncharacterized protein At2g45530) integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2043664; AT2G45530 RINGv Os10g0481450 protein (Fragment) A0A0P0XVX8 A0A0P0XVX8_ORYSJ Os10g0481450 OSNPB_100481450 ENOG411DZDS AMS Q9ZVX2 AMS_ARATH Transcription factor ABORTED MICROSPORES (Basic helix-loop-helix protein 21) (AtbHLH21) (bHLH 21) (Transcription factor EN 48) (bHLH transcription factor bHLH021) Completely male sterile; Very short filaments-H. Saedler-2003 FUNCTION: Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. 64879 Transcription factor ABORTED MICROSPORES (Basic helix-loop-helix protein 21) (AtbHLH21) (bHLH 21) (Transcription factor EN 48) (bHLH transcription factor bHLH021) nucleus [GO:0005634]; chromatin binding [GO:0003682]; protein dimerization activity [GO:0046983]; RNA polymerase II core promoter proximal region sequence-specific DNA binding [GO:0000978]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther wall tapetum development [GO:0048658]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed a bud stage of 0.6-mm, shortly after microspore release from the postmeiotic tetrads. Later restricted within the tapetum, microspores and anther locule. Still visible within the haploid nuclei, each of which had migrated to the pollen cell wall prior to pollen mitosis I. Not expressed later. {ECO:0000269|PubMed:12535353}. TISSUE SPECIFICITY: Mostly expressed in closed, post-meiotic buds, and, to a lower extent, in pre-meiotic buds. Detected in leaves, stems, and flowers. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:12679534}. locus:2039445; AT2G16910 transcription factor ABORTED Transcription factor TDR (Basic helix-loop-helix protein 5) (OsbHLH005) (Protein TAPETUM DEGENERATION RETARDATION) Q6YUS3 TDR_ORYSJ TDR BHLH5 Os02g0120500 LOC_Os02g02820 OJ1020_C02.6 OsJ_05158 OSJNBb0088N06.15 DISRUPTION PHENOTYPE: Male sterility due to failure of tapetum programmed cell death (PCD) and degeneration, and collapse of microspores in developing anthers (PubMed:17138695). Altered pollen wall formation (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565}. FUNCTION: Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. ENOG411DZDP MDC8.3 Q9LUS8,A0A1I9LMW1 P2C40_ARATH,A0A1I9LMW1_ARATH Probable protein phosphatase 2C 40 (AtPP2C40) (EC 3.1.3.16) (Protein phosphatase 2C homolog 1),Protein phosphatase 2C family protein 3.1.3.16 53614,49558 Probable protein phosphatase 2C 40 (AtPP2C40) (EC 3.1.3.16) (Protein phosphatase 2C homolog 1),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2089293; AT3G16560 phosphatase 2C Probable protein phosphatase 2C 39 (OsPP2C39) (EC 3.1.3.16) Q7XVF9 P2C39_ORYSJ Os04g0403701 LOC_Os04g33080 OJ000315_02.1 OsJ_014105 OSJNBb0118P14.8 ENOG411DZDQ F4KJ55,F4KJ54 F4KJ55_ARATH,F4KJ54_ARATH PGR5-like A protein 33049,29005 PGR5-like A protein integral component of membrane [GO:0016021] locus:2148338; AT5G59400 PGR5-like protein Os05g0110800 protein (Fragment) A0A0P0WH08,A0A0P0WHB9 A0A0P0WH08_ORYSJ,A0A0P0WHB9_ORYSJ Os05g0110800 OSNPB_050110800 ENOG411E99X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E5RT WRKY27 Q9FLX8 WRK27_ARATH Probable WRKY transcription factor 27 (WRKY DNA-binding protein 27) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 38722 Probable WRKY transcription factor 27 (WRKY DNA-binding protein 27) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; defense response to bacterium [GO:0042742]; negative regulation of transcription, DNA-templated [GO:0045892]; nitric oxide mediated signal transduction [GO:0007263]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] locus:2176907; AT5G52830 WRKY NA NA NA NA NA NA NA ENOG411E99K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E915 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E914 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E917 T14D3.170 Q9M1T6 Q9M1T6_ARATH Hydroxyproline-rich glycoprotein family protein (Serine/proline-rich) 17945 Hydroxyproline-rich glycoprotein family protein (Serine/proline-rich) integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505] locus:2096920; AT3G45230 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411E916 T27B3.10 Q9M2N8,Q1G3C5,A0A1P8BF81,F4J922 Q9M2N8_ARATH,Q1G3C5_ARATH,A0A1P8BF81_ARATH,F4J922_ARATH Uncharacterized protein T27B3.10 (Zinc ion binding / nucleic acid binding protein),Ta11-like non-LTR retrotransposon,Zinc knuckle protein,Zinc knuckle (CCHC-type) family protein 31430,20605,27090,38971 Uncharacterized protein T27B3.10 (Zinc ion binding / nucleic acid binding protein),Ta11-like non-LTR retrotransposon,Zinc knuckle protein,Zinc knuckle (CCHC-type) family protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2100794;,locus:2099826; AT3G42140,AT3G31430 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E911 Q6NQ21 Q6NQ21_ARATH At5g27440 (Transmembrane protein) (Uncharacterized protein At5g27440) 24409 At5g27440 (Transmembrane protein) (Uncharacterized protein At5g27440) integral component of membrane [GO:0016021] locus:2146360; AT5G27440 NA NA NA NA NA NA NA NA ENOG411E910 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E913 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E912 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0146600 protein (Fragment) A0A0P0WSH7 A0A0P0WSH7_ORYSJ Os06g0146600 OSNPB_060146600 ENOG411E919 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E918 Q147F7,F4INP5 Q147F7_ARATH,F4INP5_ARATH At2g24030 (Zinc ion binding / nucleic acid binding protein),Zinc ion binding / nucleic acid binding protein ARA:GQT-2074-MONOMER; 51013,41596 At2g24030 (Zinc ion binding / nucleic acid binding protein),Zinc ion binding / nucleic acid binding protein RNA binding [GO:0003723]; zinc ion binding [GO:0008270],nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2061486; AT2G24030 ZnF_U1 NA NA NA NA NA NA NA ENOG411E91E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E91D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF3424 NA NA NA NA NA NA NA ENOG411E91G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E91F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411E91A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cNMP NA NA NA NA NA NA NA ENOG411E91C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity) NA NA NA NA NA NA NA ENOG411E91B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Respiratory-chain NADH dehydrogenase 49 Kd subunit NA NA NA NA NA NA NA ENOG411E91M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E91N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E91I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3181) NA NA NA NA NA NA NA ENOG411E91H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E91K Q56YG8 Q56YG8_ARATH Uncharacterized protein 8159 Uncharacterized protein locus:4010713468; AT1G24577 NA NA NA NA NA NA NA NA ENOG411E91J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: centrosomal protein 44kDa NA NA NA NA NA NA NA ENOG411E91U DVL14 Q6IM87 Q6IM87_ARATH DVL14 (ROTUNDIFOLIA like 14) 5615 DVL14 (ROTUNDIFOLIA like 14) shoot system development [GO:0048367] locus:4010713850; AT3G63088 DVL family NA NA NA NA NA NA NA ENOG411E91T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0589400 protein,Os10g0570900 protein,Os03g0589100 protein,Os03g0590600 protein,Os10g0571000 protein,Os02g0735400 protein,Os03g0589701 protein Q10HG3,Q108W7,Q5W6J9,Q75H28,Q8S7N8,A0A0P0VPH9,A0A0P0VZT0 Q10HG3_ORYSJ,Q108W7_ORYSJ,Q5W6J9_ORYSJ,Q75H28_ORYSJ,Q8S7N8_ORYSJ,A0A0P0VPH9_ORYSJ,A0A0P0VZT0_ORYSJ Os03g0589400 LOC_Os03g39240 OSNPB_030589400,Os10g0570900 LOC_Os10g42072 OSNPB_100570900,Os03g0589100 LOC_Os03g39220 Os03g0589100 OsJ_11596 OSJNBb0085A04.16 OSNPB_030589100,Os03g0590600 LOC_Os03g39370 OsJ_11602 OSJNBa0027H16.14 OSNPB_030590600,Os10g0571000 LOC_Os10g42080 OsJ_32538 OSJNBa0095C07.28 OSNPB_100571000,Os02g0735400 OSNPB_020735400,Os03g0589701 OSNPB_030589701 ENOG411E91W Q2V323 Q2V323_ARATH At5g42146 (Transmembrane protein) 15835 At5g42146 (Transmembrane protein) integral component of membrane [GO:0016021] locus:1009023456; AT5G42146 NA NA NA NA NA NA NA NA ENOG411E91V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E91Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0520500 protein (cDNA, clone: J090067D24, full insert sequence) Q8RZL7 Q8RZL7_ORYSJ Os01g0520500 Os01g0520500 B1003B09.42 B1168H06.36 OsJ_02017 OSNPB_010520500 ENOG411E91P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E91S Q4PSK3,F4J0X4 Q4PSK3_ARATH,F4J0X4_ARATH Senescence-associated protein-related (Senescence-associated-like protein (DUF581)),Senescence-associated-like protein (DUF581) 14134,18148 Senescence-associated protein-related (Senescence-associated-like protein (DUF581)),Senescence-associated-like protein (DUF581) integral component of membrane [GO:0016021] locus:2077304; AT3G63230 Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E91R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E91Y DVL19,RTFL9 Q6IM82,F4HTB2 Q6IM82_ARATH,F4HTB2_ARATH DVL19 (ROTUNDIFOLIA like 10),ROTUNDIFOLIA like 9 5634,12603 DVL19 (ROTUNDIFOLIA like 10),ROTUNDIFOLIA like 9 shoot system development [GO:0048367] locus:4010713749;,locus:4010713549; AT3G14362,AT1G53708 DVL family NA NA NA NA NA NA NA ENOG411E91X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411E91Z MAE1.8 Q8GXK2,A0A1P8BF73 Q8GXK2_ARATH,A0A1P8BF73_ARATH Uncharacterized protein At5g60840 (Uncharacterized protein At5g60840/mae1_90),Uncharacterized protein 23155,16967 Uncharacterized protein At5g60840 (Uncharacterized protein At5g60840/mae1_90),Uncharacterized protein locus:2159330; AT5G60840 NA NA NA NA NA NA NA NA ENOG411E99E Q4PSE9 Q4PSE9_ARATH Aspartyl protease family protein (At5g24820) (Eukaryotic aspartyl protease family protein) 44575 Aspartyl protease family protein (At5g24820) (Eukaryotic aspartyl protease family protein) aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2149418; AT5G24820 aspartyl protease family protein NA NA NA NA NA NA NA ENOG411DZ2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0410750 protein A0A0P0XUK2 A0A0P0XUK2_ORYSJ Os10g0410750 OSNPB_100410750 ENOG411DUEZ Q9XI28 Q9XI28_ARATH Aspartate-glutamate racemase family (F9L1.36 protein) (Uncharacterized protein At1g15410) 36706 Aspartate-glutamate racemase family (F9L1.36 protein) (Uncharacterized protein At1g15410) chloroplast [GO:0009507]; racemase activity, acting on amino acids and derivatives [GO:0036361]; cellular amino acid metabolic process [GO:0006520] locus:2037743; AT1G15410 Asp/Glu/Hydantoin racemase Os01g0555200 protein Q5JKS2 Q5JKS2_ORYSJ Os01g0555200 B1110C07.46 OsJ_02201 OSNPB_010555200 ENOG411DUEX TIM21 Q1G3L1 TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit TIM21 (Protein SEGREGATION DISTORTION 3) DISRUPTION PHENOTYPE: Strong lethality at the post-seedling stage. {ECO:0000269|PubMed:22131050}. FUNCTION: May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. {ECO:0000250}. 30047 Probable mitochondrial import inner membrane translocase subunit TIM21 (Protein SEGREGATION DISTORTION 3) integral component of membrane [GO:0016021]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrion [GO:0005739]; mitochondrial respiratory chain complex I assembly [GO:0032981]; mitochondrial respiratory chain complex IV assembly [GO:0033617]; protein import into mitochondrial matrix [GO:0030150]; seedling development [GO:0090351] TISSUE SPECIFICITY: Expressed in leaves, sheath, flowers and buds. Lower expression in roots and stems. {ECO:0000269|PubMed:22131050}. locus:1009023383; AT4G00026 import inner membrane translocase subunit Expressed protein (Os03g0253800 protein),Os03g0253800 protein Q10NZ2,Q10NZ1,A0A0P0VVT4 Q10NZ2_ORYSJ,Q10NZ1_ORYSJ,A0A0P0VVT4_ORYSJ LOC_Os03g14890 Os03g0253800 OSNPB_030253800,Os03g0253800 LOC_Os03g14890 OSNPB_030253800,Os03g0253800 OSNPB_030253800 ENOG411DUEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carrier protein thioesterase NA NA NA NA NA NA NA ENOG411DUER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os05g0453300 protein (Fragment) A0A0P0WNA8 A0A0P0WNA8_ORYSJ Os05g0453300 OSNPB_050453300 ENOG411DUES TOC159 O81283,F4JHJ5 TC159_ARATH,F4JHJ5_ARATH Translocase of chloroplast 159, chloroplastic (AtToc159) (EC 3.6.5.-) (159 kDa chloroplast outer envelope protein) (Plastid protein import 2) (Translocase of chloroplast 160, chloroplastic) (AtToc160) (Translocase of chloroplast 86, chloroplastic) (AtToc86),Translocase of chloroplast-like protein Albino mutant defective in proteins involved in photosynthesis. In light-grown seedlings no chorophyll could be detected. After transferring seedlings to the dark and adding ALA the level of Pchlide reached 30% of that found in wildtype. Mutans lack atTOC159 leading to peturbance of plastis protein import in mesophyll cells but not in guard cells. Mutansts do not survive beyond seedling stage. Seedling lethal; Albino-F. Kessler-2000 FUNCTION: GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Required for chloroplast biogenesis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast. {ECO:0000269|PubMed:10646606, ECO:0000269|PubMed:12869544, ECO:0000269|PubMed:12951325, ECO:0000269|PubMed:15273297, ECO:0000269|PubMed:15284497, ECO:0000269|PubMed:16435266}. 3.6.5.- 160819,7197 Translocase of chloroplast 159, chloroplastic (AtToc159) (EC 3.6.5.-) (159 kDa chloroplast outer envelope protein) (Plastid protein import 2) (Translocase of chloroplast 160, chloroplastic) (AtToc160) (Translocase of chloroplast 86, chloroplastic) (AtToc86),Translocase of chloroplast-like protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; cytosol [GO:0005829]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; chaperone binding [GO:0051087]; G-protein coupled receptor activity [GO:0004930]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; ribosomal small subunit binding [GO:0043024]; transmembrane signaling receptor activity [GO:0004888]; protein import into chloroplast stroma [GO:0045037]; protein targeting to chloroplast [GO:0045036] DEVELOPMENTAL STAGE: Mostly expressed in seedlings, and, to a lower extent, in leaves and flowers. locus:2132298;,locus:504955385; AT4G02510,AT4G02482 translocase of chloroplast 159 Os05g0151400 protein,Os05g0151400 protein (Putative chloroplast outer envelope 86-like protein) (Putative chloroplast outer membrane protein),Os05g0151400 protein (Fragment) Q0DKN6,Q65XQ8,A0A0P0WIB7 Q0DKN6_ORYSJ,Q65XQ8_ORYSJ,A0A0P0WIB7_ORYSJ Os05g0151400 Os05g0151400 OSNPB_050151400,Os05g0151400 OSJNBa0072C16.3 OSNPB_050151400 P0001A07.14,Os05g0151400 OSNPB_050151400 ENOG411DUEP Q9FM86 ADT5_ARATH Probable ADP,ATP carrier protein At5g56450 (ADP/ATP translocase At5g56450) (Adenine nucleotide translocator At5g56450) FUNCTION: Catalyzes the exchange of ADP and ATP across the membrane. {ECO:0000305}. MISCELLANEOUS: The transmembrane helices are not perpendicular to the plane of the membrane, but cross the membrane at an angle. At least 2 of the odd-numbered transmembrane helices exhibit a sharp kink, due to the presence of a conserved proline residue (By similarity). {ECO:0000250}. Parkinson's disease (05012),HTLV-I infection (05166),Huntington's disease (05016),Calcium signaling pathway (04020) 36931 Probable ADP,ATP carrier protein At5g56450 (ADP/ATP translocase At5g56450) (Adenine nucleotide translocator At5g56450) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; ATP transmembrane transporter activity [GO:0005347]; ATP:ADP antiporter activity [GO:0005471]; anther development [GO:0048653]; regulation of mitochondrial membrane permeability [GO:0046902] locus:2161083; AT5G56450 ADPATP carrier protein At5g56450-like NA NA NA NA NA NA NA ENOG411DUEV PUX2 Q9ZU93,A0A1P8AXE7 PUX2_ARATH,A0A1P8AXE7_ARATH Plant UBX domain-containing protein 2 (PUX2) (AtPUB3) (CDC48-interacting UBX-domain protein 2),Plant UBX domain-containing protein 2 DISRUPTION PHENOTYPE: Enhanced resistance to powdery mildew with a reduced fungus reproduction. {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616}. FUNCTION: Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. 51064,42774 Plant UBX domain-containing protein 2 (PUX2) (AtPUB3) (CDC48-interacting UBX-domain protein 2),Plant UBX domain-containing protein 2 membrane [GO:0016020]; metal ion binding [GO:0046872]; defense response to fungus [GO:0050832]; response to fungus [GO:0009620] locus:2065363; AT2G01650 UBX domain-containing protein Os09g0401600 protein,Os03g0636600 protein,Os01g0797075 protein A0A0N7KQR8,A0A0N7KHP5,A0A0P0V997 A0A0N7KQR8_ORYSJ,A0A0N7KHP5_ORYSJ,A0A0P0V997_ORYSJ Os09g0401600 OSNPB_090401600,Os03g0636600 OSNPB_030636600,Os01g0797075 OSNPB_010797075 ENOG411DUEW PHL F4IDB2 F4IDB2_ARATH Nuclear receptor coactivator 143310 Nuclear receptor coactivator locus:2193977; AT1G72390 Spt20 family Os10g0391100 protein (Fragment) A0A0P0XTM9 A0A0P0XTM9_ORYSJ Os10g0391100 OSNPB_100391100 ENOG411DUET GAUT10 Q9SKT6 GAUTA_ARATH Probable galacturonosyltransferase 10 (EC 2.4.1.-) (Like glycosyl transferase 4) DISRUPTION PHENOTYPE: No obvious phenotype. Reduced galacturonic acid content in cell wall. {ECO:0000269|PubMed:19825675}. Abnormal xylan and pectin levels in cell walls-D. Mohnen-2009 FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 61812 Probable galacturonosyltransferase 10 (EC 2.4.1.-) (Like glycosyl transferase 4) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:2051426; AT2G20810 Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-) Q7XQR7 Q7XQR7_ORYSJ Os04g0636100 OSJNBa0043L09.30 OSJNBb0034I13.1 OSNPB_040636100 ENOG411DUEU OVA5 Q9LJE2 SYKM_ARATH Lysine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS) (Lysyl-tRNA synthetase 2) (AtKRS-2) (Protein OVULE ABORTION 5) DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterozygous plants 37% of ovules are aborted compared to 4% of ovules in wild type siblings. Ovule abortion; Male and female gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 FUNCTION: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:Q15046}. ARA:AT3G13490-MONOMER; 6.1.1.6 67588 Lysine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS) (Lysyl-tRNA synthetase 2) (AtKRS-2) (Protein OVULE ABORTION 5) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; lysine-tRNA ligase activity [GO:0004824]; metal ion binding [GO:0046872]; lysyl-tRNA aminoacylation [GO:0006430]; plant ovule development [GO:0048481] locus:2092850; AT3G13490 lysyl-trna synthetase Lysine--tRNA ligase (EC 6.1.1.6) (Lysyl-tRNA synthetase) Q6K1T2,A0A0P0VLY2 Q6K1T2_ORYSJ,A0A0P0VLY2_ORYSJ Os02g0623500 Os02g0623500 B1215B07.6 OSNPB_020623500,Os02g0623500 OSNPB_020623500 ENOG411DUEJ Q8LAM2,A0A1P8B4G8 Q8LAM2_ARATH,A0A1P8B4G8_ARATH At4g14930 (Expressed protein) (Survival protein SurE-like phosphatase/nucleotidase),Survival protein SurE-like phosphatase/nucleotidase ARA:AT4G14930-MONOMER; 34121,33707 At4g14930 (Expressed protein) (Survival protein SurE-like phosphatase/nucleotidase),Survival protein SurE-like phosphatase/nucleotidase cytosol [GO:0005829]; nucleotidase activity [GO:0008252],nucleotidase activity [GO:0008252] locus:2129510; AT4G14930 5'-nucleotidase Os07g0204500 protein (Putative stationary phase survival protein SurE) Q7XB62 Q7XB62_ORYSJ Os07g0204500 OSNPB_070204500 P0431A02.28 ENOG411DUEH Q66GR2,A0A1P8B7N8 Q66GR2_ARATH,A0A1P8B7N8_ARATH At4g17370 (Oxidoreductase family protein),Oxidoreductase family protein 40735,31878 At4g17370 (Oxidoreductase family protein),Oxidoreductase family protein oxidoreductase activity [GO:0016491] locus:2130903; AT4G17370 Oxidoreductase family C-terminal alpha/beta domain Os08g0148267 protein A0A0P0XBQ4 A0A0P0XBQ4_ORYSJ Os08g0148267 OSNPB_080148267 ENOG411DUEI ASPG2 Q9LHE3 ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 (AtASPG2) (EC 3.4.23.-) DISRUPTION PHENOTYPE: No effect on stomatal closure. {ECO:0000269|PubMed:22268147}. FUNCTION: Aspartic protease that may be involved in drought avoidance through abscisic acid signaling. {ECO:0000269|PubMed:22268147}. 3.4.23.- 50545 Protein ASPARTIC PROTEASE IN GUARD CELL 2 (AtASPG2) (EC 3.4.23.-) aspartic-type endopeptidase activity [GO:0004190]; DNA binding [GO:0003677]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2095365; AT3G20015 aspartic proteinase Os04g0677100 protein A0A0N7KJX5 A0A0N7KJX5_ORYSJ Os04g0677100 OSNPB_040677100 ENOG411DUEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyphenol oxidase middle domain Os01g0793300 protein C7IXC9 C7IXC9_ORYSJ Os01g0793300 Os01g0793300 OSNPB_010793300 ENOG411DUEB UBP21 Q9FIQ1,A0A1P8BAX6 UBP21_ARATH,A0A1P8BAX6_ARATH Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.4.19.12) (Deubiquitinating enzyme 21) (AtUBP21) (Ubiquitin thioesterase 21) (Ubiquitin-specific-processing protease 21),Ubiquitin-specific protease 21 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT5G46740-MONOMER; 3.4.19.12 82417,59371 Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.4.19.12) (Deubiquitinating enzyme 21) (AtUBP21) (Ubiquitin thioesterase 21) (Ubiquitin-specific-processing protease 21),Ubiquitin-specific protease 21 thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2178535; AT5G46740 ubiquitin carboxyl-terminal hydrolase Os02g0693400 protein Q0DYH3 Q0DYH3_ORYSJ Os02g0693400 Os02g0693400 OSNPB_020693400 ENOG411DUEC PDC3,PDC1,PDC2,PDC4 Q9M039,O82647,Q9FFT4,Q9M040 PDC3_ARATH,PDC1_ARATH,PDC2_ARATH,PDC4_ARATH Pyruvate decarboxylase 3 (AtPDC3) (EC 4.1.1.1),Pyruvate decarboxylase 1 (AtPDC1) (EC 4.1.1.1),Pyruvate decarboxylase 2 (AtPDC2) (EC 4.1.1.1),Pyruvate decarboxylase 4 (AtPDC4) (EC 4.1.1.1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plant roots are more sensitive to anoxia. {ECO:0000269|PubMed:12805625}. FUNCTION: May play a role in ethanolic fermentation during anoxia. {ECO:0000269|PubMed:12805625}. ARA:AT5G01330-MONOMER;,ARA:AT4G33070-MONOMER;,ARA:AT5G54960-MONOMER;,ARA:AT5G01320-MONOMER; 4.1.1.1; 4.1.1.1 64482,66212,65818,65465 Pyruvate decarboxylase 3 (AtPDC3) (EC 4.1.1.1),Pyruvate decarboxylase 1 (AtPDC1) (EC 4.1.1.1),Pyruvate decarboxylase 2 (AtPDC2) (EC 4.1.1.1),Pyruvate decarboxylase 4 (AtPDC4) (EC 4.1.1.1) intracellular [GO:0005622]; carboxy-lyase activity [GO:0016831]; magnesium ion binding [GO:0000287]; pyruvate decarboxylase activity [GO:0004737]; thiamine pyrophosphate binding [GO:0030976],cytosol [GO:0005829]; membrane [GO:0016020]; carboxy-lyase activity [GO:0016831]; magnesium ion binding [GO:0000287]; pyruvate decarboxylase activity [GO:0004737]; thiamine pyrophosphate binding [GO:0030976]; response to anoxia [GO:0034059],cytosol [GO:0005829]; carboxy-lyase activity [GO:0016831]; magnesium ion binding [GO:0000287]; pyruvate decarboxylase activity [GO:0004737]; thiamine pyrophosphate binding [GO:0030976]; response to hypoxia [GO:0001666] TISSUE SPECIFICITY: Expressed at low levels in roots and shoots. {ECO:0000269|PubMed:12805625}.,TISSUE SPECIFICITY: Highly expressed in seeds, and at lower levels in roots and siliques. {ECO:0000269|PubMed:12805625}.,TISSUE SPECIFICITY: Expressed at low levels in roots, shoots, flowers, siliques and seeds. {ECO:0000269|PubMed:12805625}.,TISSUE SPECIFICITY: Expressed in shoots and at lowe levels in roots, flowers and siliques. {ECO:0000269|PubMed:12805625}. locus:2179147;,locus:2123827;,locus:2160170;,locus:2179132; AT5G01330,AT4G33070,AT5G54960,AT5G01320 Pyruvate decarboxylase Pyruvate decarboxylase 1 (PDC) (EC 4.1.1.1),Pyruvate decarboxylase 3 (PDC) (EC 4.1.1.1),Pyruvate decarboxylase 2 (PDC) (EC 4.1.1.1),Os05g0469800 protein (Putative pyruvate decarboxylase),Os11g0164600 protein (Pyruvate decarboxylase isozyme 3, putative) (Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, putative),Os10g0480900 protein (Pyruvate decarboxylase isozyme 3, putative),Os07g0693100 protein (Pyruvate decarboxylase-like protein),Os07g0111301 protein,Os01g0576500 protein,Os03g0293500 protein (Fragment),Os11g0602250 protein Q0DHF6,Q0D3D2,Q10MW3,Q6AUJ8,Q53PQ3,Q7XDB0,Q7XI62,A3BFW9,A0A0P0V4F6,A0A0P0VX19,A0A0N7KT66 PDC1_ORYSJ,PDC3_ORYSJ,PDC2_ORYSJ,Q6AUJ8_ORYSJ,Q53PQ3_ORYSJ,Q7XDB0_ORYSJ,Q7XI62_ORYSJ,A3BFW9_ORYSJ,A0A0P0V4F6_ORYSJ,A0A0P0VX19_ORYSJ,A0A0N7KT66_ORYSJ PDC1 Os05g0469600 LOC_Os05g39310 OsJ_018109 OSJNBa0052E20.2,PDC3 Os07g0693100 LOC_Os07g49250 OsJ_024667,PDC2 Os03g0293500 LOC_Os03g18220,Os05g0469800 OsJ_18875 OSJNBa0052E20.3 OSNPB_050469800,Os11g0164600 LOC_Os11g06520 OsJ_33078 OSNPB_110164600,Os10g0480900 LOC_Os10g33980 OsJ_31915 OSNPB_100480900,P0034A04.127-1 Os07g0693100 OsJ_25684 OSNPB_070693100,Os07g0111301 OsJ_22842 OSNPB_070111301,Os01g0576500 OSNPB_010576500,Os03g0293500 OSNPB_030293500,Os11g0602250 OSNPB_110602250 ENOG411DUEA NPF5.10,NPF5.12 Q0WP01,Q9C7U1 PTR9_ARATH,PTR25_ARATH Protein NRT1/ PTR FAMILY 5.10 (AtNPF5.10),Protein NRT1/ PTR FAMILY 5.12 (AtNPF5.12) R-ATH-427975;R-ATH-6798695; 60651,61386 Protein NRT1/ PTR FAMILY 5.10 (AtNPF5.10),Protein NRT1/ PTR FAMILY 5.12 (AtNPF5.12) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; transporter activity [GO:0005215]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Expressed in shoots, roots and stems. Detected in leaves, flowers and siliques. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:17481610}. locus:2009487;,locus:2206991; AT1G22540,AT1G72140 peptide nitrate transporter At1g22540-like NA NA NA NA NA NA NA ENOG411DUEF CGS1,CGS2 P55217,Q9C876,A0A1P8ASL6,A0A1P8ASJ2 CGS1_ARATH,CGS2_ARATH,A0A1P8ASL6_ARATH,A0A1P8ASJ2_ARATH Cystathionine gamma-synthase 1, chloroplastic (AtCGS1) (EC 2.5.1.48) (METHIONINE OVERACCUMULATION 1) (O-succinylhomoserine (thiol)-lyase),Probable cystathionine gamma-synthase 2 (EC 2.5.1.48),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Elevated methionine levels-K. Saito-2010 FUNCTION: Catalyzes the first committed step of methionine (Met) biosynthesis. Catalyzes the formation of L-cystathionine from homoserine esters and L-cysteine, via a gamma-replacement reaction. Substrate preference for cystathionine synthesis is O-phospho-L-homoserine (OPH) > O(4)-succinyl-L-homoserine (OSH) >> O-acetyl-L-homoserine (OAH). Is able, at extremely low rate, to catalyze a gamma-elimination of OPH in the absence of cysteine to produce inorganic phosphate (Pi), 2-oxobutanoate and ammonia. {ECO:0000269|PubMed:9531508}.,FUNCTION: Catalyzes the first committed step of methionine (Met) biosynthesis. Catalyzes the formation of L-cystathionine from homoserine esters and L-cysteine, via a gamma-replacement reaction. {ECO:0000250|UniProtKB:P55217}. MISCELLANEOUS: A DNA region of the first exon coding for a conserved motif of 11 amino acids in CGS1 (positions 77-87) is required for post-transcriptional autoregulation and acts in cis to down-regulate its own mRNA stability in response to excess methionine. This conserved motif is dispensable for CGS enzymatic activity and only found in plant CGSs (PubMed:10558994, PubMed:12121993). It is unclear whether the transit peptide cleavage site is between Phe-68 and Val-69 (PubMed:9531508) or Ala-90 and Ala-91 (PubMed:25146485). {ECO:0000269|PubMed:10558994, ECO:0000269|PubMed:12121993, ECO:0000269|PubMed:25146485, ECO:0000269|PubMed:9531508}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-cystathionine from O-succinyl-L-homoserine: step 1/1. {ECO:0000305}. ARA:AT3G01120-MONOMER;MetaCyc:AT3G01120-MONOMER;,ARA:AT1G33320-MONOMER; R-ATH-1614558;R-ATH-1614603; 2.5.1.48; 2.5.1.48 59919,46004,36107,41406 Cystathionine gamma-synthase 1, chloroplastic (AtCGS1) (EC 2.5.1.48) (METHIONINE OVERACCUMULATION 1) (O-succinylhomoserine (thiol)-lyase),Probable cystathionine gamma-synthase 2 (EC 2.5.1.48),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cystathionine gamma-synthase activity [GO:0003962]; pyridoxal phosphate binding [GO:0030170]; methionine biosynthetic process [GO:0009086]; selenium compound metabolic process [GO:0001887],cystathionine gamma-synthase activity [GO:0003962]; pyridoxal phosphate binding [GO:0030170]; methionine biosynthetic process [GO:0009086],pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740] locus:2102072;,locus:2006887; AT3G01120,AT1G33320 cystathionine gamma-synthase Cys/Met metabolism PLP-dependent enzyme family protein, expressed (Os10g0399700 protein) (Putative cystathionine gamma synthase (O-succinylhomoserine (Thiol)-lyase)),Cys/Met metabolism PLP-dependent enzyme family protein (Os10g0399200 protein) (Putative cystathionine gamma synthase (O-succinylhomoserine (Thiol)-lyase)),Os10g0399100 protein (Putative O-succinylhomoserine (Thiol)-lyase (Cystathionine gamma synthase)),Os03g0376100 protein (Fragment),Os06g0242600 protein Q94I39,Q94I44,Q94I45,A0A0P0VYR6,A0A0P0WV19,A0A0P0VYN8 Q94I39_ORYSJ,Q94I44_ORYSJ,Q94I45_ORYSJ,A0A0P0VYR6_ORYSJ,A0A0P0WV19_ORYSJ,A0A0P0VYN8_ORYSJ Os10g0399700 LOC_Os10g26010 Os10g0399700 OsJ_31436 OSJNBa0050N08.11 OSNPB_100399700,LOC_Os10g25950 Os10g0399200 OsJ_31435 OSJNBa0050N08.6 OSNPB_100399200,OSJNBa0050N08.5 Os10g0399100 OSNPB_100399100,Os03g0376100 OSNPB_030376100,Os06g0242600 OSNPB_060242600 ENOG411DUEG NRT2.5 Q9LPV5,Q1G385 NRT25_ARATH,Q1G385_ARATH High affinity nitrate transporter 2.5 (AtNRT2:5),High affinity nitrate transporter DISRUPTION PHENOTYPE: Loss of plant growth and root system architecture responses to the rhizospheric Phyllobacterium (PubMed:23398541). Decreased nitrate uptake in the high-affinity range (PubMed:25065551, PubMed:25474587). {ECO:0000269|PubMed:23398541, ECO:0000269|PubMed:25065551, ECO:0000269|PubMed:25474587}. FUNCTION: Nitrate transporter involved in the constitutive high-affinity transport system (cHATS) under long-term N starvation conditions (PubMed:15107992, PubMed:25065551). Predominantly expressed in roots of nitrate-deprived plants as a 150 kDa molecular complex with NRT3.1 representing the major contributor to cHATS influx (PubMed:25474587). The principal role of this cHATS is to enable roots previously deprived of nitrate to absorb this ion and initiate induction of nitrate-inducible genes (PubMed:25474587). Not involved in transfer of nitrate from roots to shoots (PubMed:25474587). Contributes to phloem loading of nitrate in shoots during N starvation, but not required for growth and nitrate uptake in young plants (PubMed:25065551). Required for the nitrate uptake-independent plant growth promotion and lateral root response to the rhizospheric Phyllobacterium (PubMed:23398541). Might be involved in the transfer of nitrate from stored pools to cytoplasm (PubMed:15107992). {ECO:0000269|PubMed:15107992, ECO:0000269|PubMed:23398541, ECO:0000269|PubMed:25065551, ECO:0000269|PubMed:25474587}. 54262,9945 High affinity nitrate transporter 2.5 (AtNRT2:5),High affinity nitrate transporter integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706],plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; nitrate transport [GO:0015706] TISSUE SPECIFICITY: Expressed in roots, shoots and seeds (PubMed:12668777, PubMed:17540716). Expressed in leaves (PubMed:23398541). Expressed in root hair zone of the primary root and the lateral roots, but not in the lateral root tip or in older parts of the roots (PubMed:25065551). Detected mainly in the epidermis and the cortex (PubMed:25065551). Expressed in shoots only in higher-order veins (PubMed:25065551). {ECO:0000269|PubMed:12668777, ECO:0000269|PubMed:17540716, ECO:0000269|PubMed:23398541, ECO:0000269|PubMed:25065551}. locus:2010391;,locus:4515103394; AT1G12940,AT4G14358 nitrate transporter High-affinity nitrate transporter 2.3 (OsNRT2.3) Q94JG1 NRT23_ORYSJ NRT2.3 Os01g0704100 LOC_Os01g50820 OsJ_03170 P0421H07.34-1 P0421H07.34-2 P0684B02.9-1 P0684B02.9-2 FUNCTION: Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NAR2.1. Imports nitrate with high affinity when expressed with NAR2.1 in a heterologous system (Xenopus oocytes). Plays a key role in long-distance nitrate transport from root to shoot particularly at low external nitrate supply. {ECO:0000269|PubMed:21220781, ECO:0000269|PubMed:21486304, ECO:0000269|PubMed:23093362}. MISCELLANEOUS: Plants silencing isoform 1 of NTR2.3 have impaired xylem loading of nitrate and decreased plant growth at low nitrate supply (0.5 mM). {ECO:0000305|PubMed:23093362}. ENOG411DUED CHC2,CHC1 Q0WLB5,Q0WNJ6 CLAH2_ARATH,CLAH1_ARATH Clathrin heavy chain 2,Clathrin heavy chain 1 DISRUPTION PHENOTYPE: Defective in bulk endocytosis as well as in internalization of prominent plasma membrane proteins. Defects in constitutive endocytic recycling of PIN auxin transporters and their polar distribution in embryos and roots leading to altered auxin distribution patterns and associated auxin transport-related phenotypes. Defective in embryonic and postembryonic development. {ECO:0000269|PubMed:21551390}. FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters. {ECO:0000250, ECO:0000269|PubMed:21551390}. R-ATH-8856828; 193271,193245 Clathrin heavy chain 2,Clathrin heavy chain 1 chloroplast [GO:0009507]; clathrin coat of coated pit [GO:0030132]; clathrin coat of trans-Golgi network vesicle [GO:0030130]; clathrin complex [GO:0071439]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; clathrin light chain binding [GO:0032051]; structural molecule activity [GO:0005198]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897]; intracellular protein transport [GO:0006886],clathrin coat of coated pit [GO:0030132]; clathrin coat of trans-Golgi network vesicle [GO:0030130]; clathrin complex [GO:0071439]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; clathrin light chain binding [GO:0032051]; structural molecule activity [GO:0005198]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897]; intracellular protein transport [GO:0006886] locus:2103442;,locus:2074733; AT3G08530,AT3G11130 clathrin heavy chain Clathrin heavy chain 1,Clathrin heavy chain 2,Os12g0104800 protein (Fragment),Os12g0104766 protein,Os11g0104866 protein,Os11g0104900 protein Q2RBN7,Q2QYW2,Q0IQR8,A0A0P0Y653,A0A0P0XY01,A0A0P0XY45 CLH1_ORYSJ,CLH2_ORYSJ,Q0IQR8_ORYSJ,A0A0P0Y653_ORYSJ,A0A0P0XY01_ORYSJ,A0A0P0XY45_ORYSJ Os11g0104900 LOC_Os11g01380,Os12g0104800 LOC_Os12g01390,Os12g0104800 Os12g0104800 OSNPB_120104800,Os12g0104766 OSNPB_120104766,Os11g0104866 OSNPB_110104866,Os11g0104900 OSNPB_110104900 FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. ENOG411DUEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatase NA NA NA NA NA NA NA ENOG411DUE8 Q9LT85,Q9FXA1 Q9LT85_ARATH,Q9FXA1_ARATH Leucine-rich repeat (LRR) family protein,AT1G49750 protein (At1g49750) (F14J22.4 protein) (Leucine-rich repeat (LRR) family protein) 54972,54408 Leucine-rich repeat (LRR) family protein,AT1G49750 protein (At1g49750) (F14J22.4 protein) (Leucine-rich repeat (LRR) family protein) chloroplast [GO:0009507] locus:2090714;,locus:2012171; AT3G19320,AT1G49750 Leucine-rich repeat family protein NA NA NA NA NA NA NA ENOG411DUE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os07g0479100 protein (Putative NEP1-interacting protein 2),Os07g0479100 protein (Fragment) Q7XI81,A0A0P0X5T7 Q7XI81_ORYSJ,A0A0P0X5T7_ORYSJ P0434A03.105-1 P0640E12.144-1 Os07g0479100 OSNPB_070479100,Os07g0479100 OSNPB_070479100 ENOG411DUE2 MAN6 Q9LZV3 MAN6_ARATH Mannan endo-1,4-beta-mannosidase 6 (EC 3.2.1.78) (Beta-mannanase 6) (Endo-beta-1,4-mannanase 6) (AtMAN6) Delayed germination-A. Matilla-2011 ARA:AT5G01930-MONOMER; 3.2.1.78; 3.2.1.78 50622 Mannan endo-1,4-beta-mannosidase 6 (EC 3.2.1.78) (Beta-mannanase 6) (Endo-beta-1,4-mannanase 6) (AtMAN6) extracellular region [GO:0005576]; mannan endo-1,4-beta-mannosidase activity [GO:0016985]; mannan catabolic process [GO:0046355]; seed germination [GO:0009845] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16897088}. locus:2180987; AT5G01930 Mannan endo-14-beta-mannosidase Mannan endo-1,4-beta-mannosidase 8 (EC 3.2.1.78) (Beta-mannanase 8) (Endo-beta-1,4-mannanase 8) (OsMAN8),Putative mannan endo-1,4-beta-mannosidase 5 (EC 3.2.1.78) (Beta-mannanase 5) (Endo-beta-1,4-mannanase 5) (OsMAN5),Mannan endo-1,4-beta-mannosidase 7 (EC 3.2.1.78) (Beta-mannanase 7) (Endo-beta-1,4-mannanase 7) (OsMAN7),Os12g0117300 protein,Os11g0118200 protein (cDNA clone:001-127-H03, full insert sequence) Q0IQJ7,Q5W6G0,Q2RBB1,B9GBJ3,B7EY38 MAN8_ORYSJ,MAN5_ORYSJ,MAN7_ORYSJ,B9GBJ3_ORYSJ,B7EY38_ORYSJ MAN8 Os12g0117300 LOC_Os12g02520,MAN5 Os05g0319100 LOC_Os05g25480 OSJNBb0006B22.2 OSJNBb0059K16.9,MAN7 Os11g0118200 LOC_Os11g02600,Os12g0117300 OsJ_35012 OSNPB_120117300,Os11g0118200 OSNPB_110118200 ENOG411DUE3 Q9LK80,A0A1P8BFA2,F4K1N3 Q9LK80_ARATH,A0A1P8BFA2_ARATH,F4K1N3_ARATH Uncharacterized protein At5g48340,Uncharacterized protein 59539,45649,58932 Uncharacterized protein At5g48340,Uncharacterized protein locus:2156238; AT5G48340 NA Os01g0897100 protein Q8LJ29 Q8LJ29_ORYSJ Os01g0897100 Os01g0897100 OSNPB_010897100 P0674H09.17 ENOG411DUE0 HPR3 Q9LE33,O64643,Q67Y01,F4K732 HPR3_ARATH,O64643_ARATH,Q67Y01_ARATH,F4K732_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 (EC 1.1.1.79) (EC 1.1.1.81) (NAD(P)H-dependent hydroxypyruvate reductase 3) (AtHPR3) (HPR 3),At2g45630/F17K2.16 (D-isomer specific 2-hydroxyacid dehydrogenase family protein) (Putative glycerate dehydrogenase),D-isomer specific 2-hydroxyacid dehydrogenase family protein (Putative glycerate dehydrogenase),NAD(P)-binding Rossmann-fold superfamily protein DISRUPTION PHENOTYPE: Disrupted photorespiratory flux leading to a slight altered leaf concentrations of the photorespiratory intermediates hydroxypyruvate (HP), glycerate, and glycine. {ECO:0000269|PubMed:21205613}. Slightly elevated levels of photorespiratory intermediates; No other phenotypes detected-H. Bauwe-2011 FUNCTION: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate. {ECO:0000269|PubMed:21205613}. ARA:AT1G12550-MONOMER;,ARA:AT2G45630-MONOMER; R-ATH-389661; 1.1.1.81; 1.1.1.79; 1.1.1.81 34912,20085,36841,26129 Glyoxylate/hydroxypyruvate reductase HPR3 (EC 1.1.1.79) (EC 1.1.1.81) (NAD(P)H-dependent hydroxypyruvate reductase 3) (AtHPR3) (HPR 3),At2g45630/F17K2.16 (D-isomer specific 2-hydroxyacid dehydrogenase family protein) (Putative glycerate dehydrogenase),D-isomer specific 2-hydroxyacid dehydrogenase family protein (Putative glycerate dehydrogenase),NAD(P)-binding Rossmann-fold superfamily protein cytosol [GO:0005829]; glyoxylate reductase (NADP) activity [GO:0030267]; hydroxypyruvate reductase activity [GO:0016618]; NAD binding [GO:0051287]; oxidative photosynthetic carbon pathway [GO:0009854]; photorespiration [GO:0009853],NAD binding [GO:0051287]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616],cytosol [GO:0005829]; glyoxylate reductase (NADP) activity [GO:0030267]; hydroxypyruvate reductase activity [GO:0016618]; NAD binding [GO:0051287],cytosol [GO:0005829]; integral component of membrane [GO:0016021]; glyoxylate reductase (NADP) activity [GO:0030267]; hydroxypyruvate reductase activity [GO:0016618]; NAD binding [GO:0051287] locus:2034665;,locus:2043684;,locus:2185274; AT1G12550,AT2G45630,AT5G28310 Glyoxylate Os04g0107200 protein (Fragment),OSJNBb0085F13.13 protein (Os04g0107500 protein) (cDNA clone:J013091I17, full insert sequence),OSJNBb0004G23.11 protein (OSJNBb0085F13.6 protein) (Os04g0106400 protein) (cDNA clone:001-205-D04, full insert sequence) (cDNA clone:J013110E20, full insert sequence) (cDNA clone:J013164G01, full insert sequence) Q0JFF8,Q7XRA2,Q7X6P0 Q0JFF8_ORYSJ,Q7XRA2_ORYSJ,Q7X6P0_ORYSJ Os04g0107200 Os04g0107200 OSNPB_040107200,Os04g0107500 OSJNBb0085F13.13 OSNPB_040107500,Os04g0106400 Os04g0106400 OSJNBb0004G23.11 OSJNBb0085F13.6 OSNPB_040106400 ENOG411DUE1 MAD1 Q9LTY1 MAD1_ARATH Mitotic spindle checkpoint protein MAD1 (Mitotic arrest deficient protein 1) FUNCTION: Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and delays the onset of anaphase when this process is not complete. It inhibits the activity of the anaphase promoting complex by sequestering CDC20 until all chromosomes are aligned at the metaphase plate. Required for anchoring MAD2 to the nuclear envelope. {ECO:0000269|PubMed:22457071}. 82433 Mitotic spindle checkpoint protein MAD1 (Mitotic arrest deficient protein 1) kinetochore [GO:0000776]; mitotic spindle [GO:0072686]; nuclear envelope [GO:0005635]; attachment of mitotic spindle microtubules to kinetochore [GO:0051315]; cell division [GO:0051301]; mitotic spindle assembly checkpoint [GO:0007094] locus:2158804; AT5G49880 Mitotic checkpoint Os01g0877300 protein (Putative mitotic checkpoint protein) (cDNA clone:J033028G02, full insert sequence),Hexosyltransferase (EC 2.4.1.-) Q5N9G9,Q8LJH1 Q5N9G9_ORYSJ,Q8LJH1_ORYSJ Os01g0877300 OSNPB_010877300 P0471B04.5,Os01g0877400 OSNPB_010877400 P0471B04.6 ENOG411DUE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411DUE7 Q9C6J9,Q9C6K1,Q3E9E9,Q9C6J7,Q9C6K2,Q9C6J6,F4I6L3,A0A1P8AQ63,F4I9K2 Q9C6J9_ARATH,Q9C6K1_ARATH,Q3E9E9_ARATH,Q9C6J7_ARATH,Q9C6K2_ARATH,Q9C6J6_ARATH,F4I6L3_ARATH,A0A1P8AQ63_ARATH,F4I9K2_ARATH Plant mobile domain protein family (Uncharacterized protein F8A12.4),Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein F8A12.2),Aminotransferase-like, plant mobile domain family protein,Aminotransferase-like, mobile domain protein (Uncharacterized protein F8A12.6),Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein F8A12.1),Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein F8A12.7),Aminotransferase-like, mobile domain protein 91487,69820,80553,60469,10023,88414,47361,88927,79938 Plant mobile domain protein family (Uncharacterized protein F8A12.4),Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein F8A12.2),Aminotransferase-like, plant mobile domain family protein,Aminotransferase-like, mobile domain protein (Uncharacterized protein F8A12.6),Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein F8A12.1),Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein F8A12.7),Aminotransferase-like, mobile domain protein transaminase activity [GO:0008483],plasmodesma [GO:0009506]; transaminase activity [GO:0008483] locus:2036401;,locus:2036366;,locus:2146218;,locus:2036431;,locus:2033189;,locus:2036446;,locus:2033172;,locus:4010713536; AT1G50790,AT1G50770,AT5G18510,AT1G50820,AT1G50760,AT1G50830,AT1G50750,AT1G51538 Aminotransferase-like plant mobile domain family protein Expressed protein (Os03g0816300 protein) Q10BI8 Q10BI8_ORYSJ Os03g0816300 LOC_Os03g60170 OSNPB_030816300 ENOG411DUE4 CEPR2 Q9C7T7 CEPR2_ARATH Receptor protein-tyrosine kinase CEPR2 (EC 2.7.10.1) (Protein C-TERMINALLY ENCODED PEPTIDE RECEPTOR 2) DISRUPTION PHENOTYPE: The double mutant cepr1 cepr2 is insensitive to CEP1 in a root growth regulation and exhibit pleiotropic phenotype characterized by pale-green leaves and enhanced lateral root elongation. At adult stage, smaller rosette leaves and shorter floral stems, accompanied by anthocyanin accumulation. Down-regulation of genes involved in N uptake and assimilation pathways (e.g. NRT1.1, NRT2.1 and NRT3.1) leading to impaired nitrate uptake activity. Altered systemic induction of genes involved in N uptake and assimilation pathways in N-depletion conditions (PubMed:25324386). Increased resistance to osmotic stress (e.g. mannitol) (PubMed:21431781). {ECO:0000269|PubMed:21431781, ECO:0000269|PubMed:25324386}. FUNCTION: Receptor kinase involved in the perception of C-terminally encoded plant signaling peptide (CEP) and subsequent regulation of root and shoot development. Together with CEPR1, mediates systemic nitrogen (N)-demand signaling upon the perception of root-derived peptides (e.g. CEP1) via the up-regulation of genes involved in N uptake and assimilation pathways. {ECO:0000269|PubMed:25324386}. 2.7.10.1 107905 Receptor protein-tyrosine kinase CEPR2 (EC 2.7.10.1) (Protein C-TERMINALLY ENCODED PEPTIDE RECEPTOR 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; peptide binding [GO:0042277]; peptide hormone binding [GO:0017046]; peptide receptor activity [GO:0001653]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; nitrate import [GO:1902025]; regulation of root development [GO:2000280]; regulation of shoot system development [GO:0048831]; response to mannitol [GO:0010555]; response to nitrate starvation [GO:0090548]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Expressed in mature leaves, primary roots, and the root tips of both primary and lateral roots. {ECO:0000269|PubMed:25324386}. locus:2207036; AT1G72180 receptor-like protein kinase Os01g0878300 protein (Putative leucine-rich receptor-like protein kinase) (cDNA clone:J023012G17, full insert sequence),Leucine Rich Repeat family protein, expressed (Leucine Rich Repeat, putative) (Os11g0232100 protein),Os11g0232100 protein (Fragment),Os01g0878300 protein (Fragment),Os11g0233000 protein (Fragment) Q8L3T4,Q53MD2,A0A0P0Y1D3,A0A0P0VB32,A0A0N7KSN8 Q8L3T4_ORYSJ,Q53MD2_ORYSJ,A0A0P0Y1D3_ORYSJ,A0A0P0VB32_ORYSJ,A0A0N7KSN8_ORYSJ P0018C10.13-1 P0471B04.24-1 Os01g0878300 OsJ_04280 OSNPB_010878300,Os11g0232100 LOC_Os11g12530 Os11g0232100 OSNPB_110232100,Os11g0232100 OSNPB_110232100,Os01g0878300 OSNPB_010878300,Os11g0233000 OSNPB_110233000 ENOG411DUE5 Q147F2,Q8H1E1,A0A1P8AWE4,F4I8K9,B3H442 Q147F2_ARATH,Q8H1E1_ARATH,A0A1P8AWE4_ARATH,F4I8K9_ARATH,B3H442_ARATH At1g77890 (DNA-directed RNA polymerase II protein),DNA-directed RNA polymerase II protein (Uncharacterized protein At4g08540),DNA-directed RNA polymerase II protein 52120,53141,42528,51857,50772 At1g77890 (DNA-directed RNA polymerase II protein),DNA-directed RNA polymerase II protein (Uncharacterized protein At4g08540),DNA-directed RNA polymerase II protein DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; positive regulation of autophagy [GO:0010508] locus:2029451;,locus:2133579; AT1G77890,AT4G08540 NA Os07g0626300 protein (cDNA clone:J013157E21, full insert sequence),Os07g0626300 protein (Fragment) Q7XIG6,A0A0P0X987 Q7XIG6_ORYSJ,A0A0P0X987_ORYSJ OJ1339_F05.121-1 Os07g0626300 OSNPB_070626300,Os07g0626300 OSNPB_070626300 ENOG411E40J F24M12.140 Q9SD36,F4J389,B3H4P5 Q9SD36_ARATH,F4J389_ARATH,B3H4P5_ARATH Altered inheritance of mitochondria protein (At3g51100) (Uncharacterized protein F24M12.140),Altered inheritance of mitochondria protein 23449,18984,22375 Altered inheritance of mitochondria protein (At3g51100) (Uncharacterized protein F24M12.140),Altered inheritance of mitochondria protein locus:2080843; AT3G51100 NA Os06g0713900 protein (cDNA, clone: J075146C02, full insert sequence) Q5Z7T6 Q5Z7T6_ORYSJ Os06g0713900 OJ1136_F03.14 OSNPB_060713900 ENOG411E40I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMN8 Q8H0V3,B9DH52 LGUL_ARATH,B9DH52_ARATH Lactoylglutathione lyase (EC 4.4.1.5) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (Methylglyoxalase) (S-D-lactoylglutathione methylglyoxal lyase),Lactoylglutathione lyase (EC 4.4.1.5) (Glyoxalase I) FUNCTION: Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. {ECO:0000250}.,FUNCTION: Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. {ECO:0000256|RuleBase:RU361179}. PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 1/2.,PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 1/2. {ECO:0000256|RuleBase:RU361179}. ARA:AT1G08110-MONOMER; R-ATH-70268; 4.4.1.5 20848,26472 Lactoylglutathione lyase (EC 4.4.1.5) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (Methylglyoxalase) (S-D-lactoylglutathione methylglyoxal lyase),Lactoylglutathione lyase (EC 4.4.1.5) (Glyoxalase I) lactoylglutathione lyase activity [GO:0004462]; metal ion binding [GO:0046872]; protein domain specific binding [GO:0019904],chloroplast [GO:0009507]; cytosol [GO:0005829]; lactoylglutathione lyase activity [GO:0004462]; metal ion binding [GO:0046872]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243]; response to cadmium ion [GO:0046686] locus:2205110; AT1G08110 Lactoylglutathione lyase Lactoylglutathione lyase (EC 4.4.1.5) (Glyoxalase I) Q0DJE6 Q0DJE6_ORYSJ Os05g0295800 Os05g0295800 OSNPB_050295800 FUNCTION: Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. {ECO:0000256|RuleBase:RU361179}. ENOG411EMN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein NA NA NA NA NA NA NA ENOG411EMNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EMNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EMNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411EMNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411EMNX LHP1,TFL2 Q946J8,A0A1P8B9H0,A0A1P8B9G6 LHP1_ARATH,A0A1P8B9H0_ARATH,A0A1P8B9G6_ARATH Chromo domain-containing protein LHP1 (Protein LIKE HETEROCHROMATIN PROTEIN 1) (Protein TERMINAL FLOWER 2),Like heterochromatin protein (LHP1) Callus formation is accelerated in experiments performed with lhp1-1 mutant seeds.,The lhp1-1 mutant flowers early and displays aberrant organ development and plant architecture.,The lhp1-2 mutant flowers early and displays aberrant organ development and plant architecture.,Plants are extremely small with a reduced number of leaves leaves are sessile and the inflorescences are completely arrested.Enhanced de-repression of KNOX gene expression. Dwarf; Abnormal flower morphology; Early flowering-K. Goto-2003 FUNCTION: Structural component of heterochromatin involved in gene repression, including several floral homeotic genes and FLT that regulates flowering time. Required for maintenance of vernalization-induced repression of FLC. As part of the PRC1-like complex, recognizes and binds histone H3 tails methylated at 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me), leading to epigenetic repression. PcG PRC1 complex maintains the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility. Transcriptional repressor that binds DNA on GAGA-like motif and 5'-(A/G/T)AACCCTA(A/G)-3' consensus motif in the promoters of target genes. Recognizes and binds histone H3 tails methylated at 'Lys-27' (H3K27me) but depleted in active histone marks such as H3K4me, leading to epigenetic repression. When in complex with LHP1, recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and 'Lys-27' (H3K27me), mostly corresponding to stress-responsive genes (PubMed:27495811). {ECO:0000269|PubMed:11731464, ECO:0000269|PubMed:12826620, ECO:0000269|PubMed:15356387, ECO:0000269|PubMed:16549797, ECO:0000269|PubMed:16682972, ECO:0000269|PubMed:19097900, ECO:0000269|PubMed:27495811}. 48644,49411,47280 Chromo domain-containing protein LHP1 (Protein LIKE HETEROCHROMATIN PROTEIN 1) (Protein TERMINAL FLOWER 2),Like heterochromatin protein (LHP1) chloroplast [GO:0009507]; euchromatin [GO:0000791]; nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; GTP cyclohydrolase II activity [GO:0003935]; methylated histone binding [GO:0035064]; sequence-specific DNA binding [GO:0043565]; cell differentiation [GO:0030154]; chromatin organization [GO:0006325]; chromatin silencing [GO:0006342]; covalent chromatin modification [GO:0016569]; flower development [GO:0009908]; multidimensional cell growth [GO:0009825]; negative regulation of flower development [GO:0009910]; negative regulation of gene expression, epigenetic [GO:0045814]; negative regulation of molecular function, epigenetic [GO:0045857]; negative regulation of transcription, DNA-templated [GO:0045892]; photoperiodism [GO:0009648]; photoperiodism, flowering [GO:0048573]; shoot system morphogenesis [GO:0010016]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634] TISSUE SPECIFICITY: Mainly expressed in meristematic tissues of vegetative, inflorescence and floral organs, like in developing ovules, petals, root pericycle, petiole and petiole side of developing leaf blade or vascular tissue. {ECO:0000269|PubMed:11731464, ECO:0000269|PubMed:12826620}. locus:2176006; AT5G17690 CHROMO NA NA NA NA NA NA NA ENOG411EMNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox U-box domain-containing protein 57 (EC 2.3.2.27) (Plant U-box protein 57) (OsPUB57) (RING-type E3 ubiquitin transferase PUB57),Os03g0424000 protein (Fragment),Os03g0423700 protein Q0DR28,A0A0P0VYW9,A0A0P0VYX0 PUB57_ORYSJ,A0A0P0VYW9_ORYSJ,A0A0P0VYX0_ORYSJ PUB57 Os03g0424200 LOC_Os03g31070,Os03g0424000 OSNPB_030424000,Os03g0423700 OSNPB_030423700 FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. May be involved in cell death signaling. {ECO:0000269|PubMed:19825583}. ENOG411EMNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Os04g0489100 protein Q0JC68 Q0JC68_ORYSJ Os04g0489100 Os04g0489100 OSNPB_040489100 ENOG411EMNQ A0A1P8B3W4,F4JL01,F4JL00 A0A1P8B3W4_ARATH,F4JL01_ARATH,F4JL00_ARATH Lipase class 3 family protein 72989,71799,70907 Lipase class 3 family protein hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] locus:2130000; AT4G16070 Lipase 3 N-terminal region Lipase class 3-like protein (OJ1116_C07.9 protein) (Os01g0309900 protein) (cDNA clone:J023108O19, full insert sequence) Q8L570 Q8L570_ORYSJ OJ1116_C07.9 Os01g0309900 OSJNBa0008D05.32 OSNPB_010309900 P0551A11.12 ENOG411EMNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase 3 N-terminal region Os09g0569300 protein (cDNA clone:J023019G10, full insert sequence) B7EGK6 B7EGK6_ORYSJ Os09g0569300 OSNPB_090569300 ENOG411E1G1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0272900 protein (Fragment) Q0E245 Q0E245_ORYSJ Os02g0272900 Os02g0272900 OSNPB_020272900 ENOG411EDPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EDPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Z1C alpha zein protein NA NA NA NA NA NA NA ENOG411EDPK Q9SIS2 Q9SIS2_ARATH At2g25200 (Uncharacterized protein At2g25200) 40351 At2g25200 (Uncharacterized protein At2g25200) locus:2059556; AT2G25200 Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411EDPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDPI Q9C9N5 Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 76025 Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2033379; AT1G66830 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EDPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lactamase_B Os03g0643250 protein A0A0P0W0M3 A0A0P0W0M3_ORYSJ Os03g0643250 OSNPB_030643250 ENOG411EDPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os12g0640200 protein A0A0P0YD70 A0A0P0YD70_ORYSJ Os12g0640200 OSNPB_120640200 ENOG411EDPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411EDPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411EDPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDP3 D6PKL1 Q9SUA3 D6KL1_ARATH Serine/threonine-protein kinase D6PKL1 (EC 2.7.11.1) (Serine/threonine-protein kinase AGC1-2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the quadruple d6pk, d6pkl1, d6pkl2 and d6pkl3 mutants are deficient in lateral root formation and mildly agravitropic, have fused or single cotyledons and narrow and twisted leaves, form few axillary shoots, are almost infertile and impaired in phototropic hypocotyl bending when exposed to lateral white light. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. Quadruple mutant displays defects in many aspects of development. Defects include:abnormal leaves leaves are narrow and twisted; reduced number of axillary shoots and reduced fertility. In addition mutants also display single or fused cotyldons reduced number of lateral roots and are mildy agravitropic. FUNCTION: Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation. D6PK-mediated PIN phosphorylation promotes auxin transport in the hypocotyl and this is a prerequisite for PHOT1-dependent hypocotyl bending. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. 2.7.11.1 55947 Serine/threonine-protein kinase D6PKL1 (EC 2.7.11.1) (Serine/threonine-protein kinase AGC1-2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2133837; AT4G26610 S_TKc NA NA NA NA NA NA NA ENOG411EDP1 DOF5.1 Q9LZ56 DOF51_ARATH Dof zinc finger protein DOF5.1 (AtDOF5.1) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 42531 Dof zinc finger protein DOF5.1 (AtDOF5.1) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2181773; AT5G02460 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EDP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EDP7 XBAT34 Q9FPH0 XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT34) (Protein XB3 homolog 4) (RING-type E3 ubiquitin transferase XBAT34) FUNCTION: No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro. {ECO:0000269|PubMed:15644464}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 41383 Putative E3 ubiquitin-protein ligase XBAT34 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT34) (Protein XB3 homolog 4) (RING-type E3 ubiquitin transferase XBAT34) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842] locus:505006458; AT4G14365 Ankyrin repeat NA NA NA NA NA NA NA ENOG411EDP6 Q9FKE4,O65506,A0A1P8BGK7,A0A1P8B7M2,A0A1P8BGN2,A0A1P8BGN6,A0A1P8BGN8 Q9FKE4_ARATH,O65506_ARATH,A0A1P8BGK7_ARATH,A0A1P8B7M2_ARATH,A0A1P8BGN2_ARATH,A0A1P8BGN6_ARATH,A0A1P8BGN8_ARATH Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) 79984,182787,75992,161622,83599,82506,61748 Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) ADP binding [GO:0043531]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2153368;,locus:2122199; AT5G45210,AT4G36140 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EDP5 F4IPV6 F4IPV6_ARATH Protein kinase superfamily protein R-ATH-430116;R-ATH-442742;R-ATH-5673000;R-ATH-5674135;R-ATH-5674499;R-ATH-5675221; 87363 Protein kinase superfamily protein intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2052786; AT2G31010 STYKc NA NA NA NA NA NA NA ENOG411EDP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411E1CF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EBBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E5WS T7M13.6 Q9FLB7,Q9SG91 Q9FLB7_ARATH,Q9SG91_ARATH At5g05370 (Cytochrome b-c1 complex, subunit 8 protein) (Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein),At3g10860 (Cytochrome b-c1 complex, subunit 8 protein) (Putative ubiquinol-cytochrome C reductase complex ubiquinone-binding protein (QP-C)) 8418,8505 At5g05370 (Cytochrome b-c1 complex, subunit 8 protein) (Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein),At3g10860 (Cytochrome b-c1 complex, subunit 8 protein) (Putative ubiquinol-cytochrome C reductase complex ubiquinone-binding protein (QP-C)) mitochondrial respiratory chain complex III [GO:0005750]; ubiquinol-cytochrome-c reductase activity [GO:0008121]; electron transport chain [GO:0022900],membrane [GO:0016020]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; ubiquinol-cytochrome-c reductase activity [GO:0008121]; electron transport chain [GO:0022900] locus:2153574;,locus:2103217; AT5G05370,AT3G10860 Cytochrome b-c1 complex subunit Os06g0175900 protein (Os06g0177000 protein) (Putative ubiquinol-cytochrome C reductase complex ubiquinone-binding protein) Q9LDS7 Q9LDS7_ORYSJ Os06g0177000 Os06g0175900 OsJ_20319 OSNPB_060175900 OSNPB_060177000 P0015E04.19 P0015E04.32 ENOG411E5WR Q5XV37 Q5XV37_ARATH Transmembrane protein 12497 Transmembrane protein integral component of membrane [GO:0016021] locus:504956459; AT5G21910 NA Expressed protein (Os03g0176900 protein) (cDNA clone:J033044N03, full insert sequence) Q10R03 Q10R03_ORYSJ LOC_Os03g07980 Os03g0176900 OSNPB_030176900 ENOG411E5WQ MBK23.8 Q9FFS4,A0A1P8BAH1 Q9FFS4_ARATH,A0A1P8BAH1_ARATH At5g41560 (DET1 complexing ubiquitin ligase) (Uncharacterized protein At5g41560),DET1 complexing ubiquitin ligase 11356,8194 At5g41560 (DET1 complexing ubiquitin ligase) (Uncharacterized protein At5g41560),DET1 complexing ubiquitin ligase nucleus [GO:0005634]; ligase activity [GO:0016874]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436],ligase activity [GO:0016874]; regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032434] locus:2160502; AT5G41560 DET1- and DDB1-associated protein 1 Expressed protein (Os03g0125700 protein) (cDNA clone:001-108-G11, full insert sequence) Q10SE2 Q10SE2_ORYSJ Os03g0125700 LOC_Os03g03420 Os03g0125700 OsJ_09243 OSNPB_030125700 ENOG411E5WP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5WW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5WV SAUR51 Q9LR00 Q9LR00_ARATH At1g75580 (F10A5.21) (SAUR-like auxin-responsive protein family) 12309 At1g75580 (F10A5.21) (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2005709; AT1G75580 auxin-responsive protein NA NA NA NA NA NA NA ENOG411E5WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor bHLH135 Transcription factor ILI4 (OsILI4) (Basic helix-loop-helix protein 172) (OsbHLH172) (Protein BRASSINOSTEROID UPREGULATED 1) (Protein INCREASED LEAF INCLINATION 4) (bHLH transcription factor bHLH172),Transcription factor ILI5 (OsILI5) (Basic helix-loop-helix protein 170) (OsbHLH170) (Protein INCREASED LEAF INCLINATION 5) (Protein POSITIVE REGULATOR OF GRAIN LENGTH 2) (bHLH transcription factor bHLH170) Q0DDF6,Q6YUX0 ILI4_ORYSJ,ILI5_ORYSJ ILI4 BHLH172 BU1 Os06g0226500 LOC_Os06g12210 OsJ_20669,ILI5 BHLH170 PGL2 Os02g0747900 LOC_Os02g51320 OsJ_08379 OSJNBa0078N11.24 FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1. {ECO:0000269|PubMed:19648232}.,FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}. MISCELLANEOUS: Plants over-expressing ILI4 show enhanced bending of the lamina joint, increased grain size and resistance to brassinazole, an inhibitor of BR biosynthesis. {ECO:0000305|PubMed:19648232}.,MISCELLANEOUS: Plants over-expressing ILI5 produce increased grain size, caused by elongated cells in lemma. {ECO:0000305|PubMed:23136524}. ENOG411E5WT Q2V3E2 YIPL5_ARATH Protein yippee-like At4g27740 11781 Protein yippee-like At4g27740 metal ion binding [GO:0046872] locus:2137742; AT4G27740 Pfam:Yippee NA NA NA NA NA NA NA ENOG411E5WY Q9SZV4 Q9SZV4_ARATH AT4g30010/F6G3_40 (ATP-dependent RNA helicase) (Uncharacterized protein AT4g30010) (Uncharacterized protein F6G3.40) 10439 AT4g30010/F6G3_40 (ATP-dependent RNA helicase) (Uncharacterized protein AT4g30010) (Uncharacterized protein F6G3.40) mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrion [GO:0005739]; plastid [GO:0009536]; helicase activity [GO:0004386] locus:2126475; AT4G30010 NA Os02g0175800 protein (Putative fiber protein Fb15) (cDNA clone:001-013-E12, full insert sequence) (cDNA clone:J013040G12, full insert sequence) Q6EUQ5 Q6EUQ5_ORYSJ OJ1077_E05.15-1 Os02g0175800 OsJ_05587 OSNPB_020175800 ENOG411E5WX B9DGJ0,Q8L9Z6,A0A1P8BF46,A0A1P8BF54 B9DGJ0_ARATH,Q8L9Z6_ARATH,A0A1P8BF46_ARATH,A0A1P8BF54_ARATH AT5G18310 protein (Ubiquitin hydrolase),Ubiquitin hydrolase (Uncharacterized protein At5g18310),Ubiquitin hydrolase 18863,16114,12904,15653 AT5G18310 protein (Ubiquitin hydrolase),Ubiquitin hydrolase (Uncharacterized protein At5g18310),Ubiquitin hydrolase plasma membrane [GO:0005886]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2146283; AT5G18310 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E5WC TFB5 Q6NNM0,A0A1P8AR18,B3H572 TFB5_ARATH,A0A1P8AR18_ARATH,B3H572_ARATH RNA polymerase II transcription factor B subunit 5 (General transcription and DNA repair factor IIH subunit TFB5) (AtTFB5) (TFIIH subunit TFB5),Nucleotide excision repair, TFIIH, subunit TTDA FUNCTION: Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. {ECO:0000250|UniProtKB:Q6ZYL4}. R-ATH-113418;R-ATH-5696395;R-ATH-5696400;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 8111,8923,8140 RNA polymerase II transcription factor B subunit 5 (General transcription and DNA repair factor IIH subunit TFB5) (AtTFB5) (TFIIH subunit TFB5),Nucleotide excision repair, TFIIH, subunit TTDA core TFIIH complex [GO:0000439]; nucleotide-excision repair [GO:0006289]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],core TFIIH complex [GO:0000439]; integral component of membrane [GO:0016021]; nucleotide-excision repair [GO:0006289]; regulation of transcription, DNA-templated [GO:0006355],core TFIIH complex [GO:0000439]; nucleotide-excision repair [GO:0006289]; regulation of transcription, DNA-templated [GO:0006355] locus:2034685;,locus:4515102707; AT1G12400,AT1G62886 REX1 DNA Repair family protein Os05g0198700 protein,Os07g0573600 protein (cDNA clone:J033072E11, full insert sequence),Os05g0108500 protein B9FMY7,Q6ZL18,Q65X21 B9FMY7_ORYSJ,Q6ZL18_ORYSJ,Q65X21_ORYSJ Os05g0198700 OsJ_17460 OSNPB_050198700,Os07g0573600 Os07g0573600 OJ1699_E05.20 OsJ_24828 OSNPB_070573600,Os05g0108500 Os05g0108500 OSJNBa0068N01.14 OSNPB_050108500 ENOG411E5WB BHLH149 O80482 BH149_ARATH Transcription factor bHLH149 (ATBS1 interacting factor 4) (Basic helix-loop-helix protein 149) (AtbHLH149) (bHLH 149) (Transcription factor EN 144) (bHLH transcription factor bHLH149) FUNCTION: Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269|PubMed:20023194}. 23153 Transcription factor bHLH149 (ATBS1 interacting factor 4) (Basic helix-loop-helix protein 149) (AtbHLH149) (bHLH 149) (Transcription factor EN 144) (bHLH transcription factor bHLH149) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2195291; AT1G09250 Transcription factor Expressed protein (Os03g0311600 protein) (cDNA clone:J033136P14, full insert sequence) Q10ME5 Q10ME5_ORYSJ Os03g0311600 LOC_Os03g19780 Os03g0311600 OSNPB_030311600 ENOG411E5WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0671100 protein B9FUT4 B9FUT4_ORYSJ Os07g0671100 OsJ_25527 OSNPB_070671100 ENOG411E5WD Q8LFI5 Q8LFI5_ARATH Uncharacterized protein 18756 Uncharacterized protein locus:2125796; AT4G04630 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E5WK GATA6 Q9SD38 GATA6_ARATH GATA transcription factor 6 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. 34678 GATA transcription factor 6 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; response to light stimulus [GO:0009416] locus:2080828; AT3G51080 gata transcription factor NA NA NA NA NA NA NA ENOG411E5WH Q8L757 Q8L757_ARATH At4g02715 (Flocculation FLO11-like protein) (Uncharacterized protein At4g02715) 22584 At4g02715 (Flocculation FLO11-like protein) (Uncharacterized protein At4g02715) locus:504955413; AT4G02715 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E5WN Q8VY68,F4JFX0 Q8VY68_ARATH,F4JFX0_ARATH Glycine-rich protein (Uncharacterized protein At4g08230),Glycine-rich protein 11548,6730 Glycine-rich protein (Uncharacterized protein At4g08230),Glycine-rich protein endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; calcium ion transport [GO:0006816]; endoplasmic reticulum calcium ion homeostasis [GO:0032469] locus:2132472; AT4G08230 Protein of unknown function (DUF2763) Expressed protein (Os03g0263700 protein) (cDNA clone:J023110K01, full insert sequence) Q10NP4 Q10NP4_ORYSJ Os03g0263700 LOC_Os03g15720 Os03g0263700 OSNPB_030263700 ENOG411E5W2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E5W1 Q1PE06,B3H7E6 Q1PE06_ARATH,B3H7E6_ARATH Myelin transcription factor Phosphorylation of D1 D2 and CP43 proteins of PSII core was reduced in the stn8 mutants in comparison with the wild type. No difference in phenotype between mutant and wild type plants under normal growth conditions. 20819,19294 Myelin transcription factor integral component of membrane [GO:0016021] locus:2181062; AT5G01910 NA NA NA NA NA NA NA NA ENOG411E5W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os05g0362600 protein A0A0P0WLL9 A0A0P0WLL9_ORYSJ Os05g0362600 OSNPB_050362600 ENOG411E5W9 A0A1P8AUX1 A0A1P8AUX1_ARATH Plastid transcriptionally active protein 11595 Plastid transcriptionally active protein integral component of membrane [GO:0016021]; heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] NA Os01g0612800 protein (cDNA clone:J023078J12, full insert sequence) Q5ZBI1 Q5ZBI1_ORYSJ Os01g0612800 OsJ_02588 OSNPB_010612800 P0046B10.33 P0410E01.14 ENOG411E1ET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated ABC transporter G family member 35 (OsABCG35) (Pleiotropic drug resistance protein 11) (OsPDR11),ABC transporter G family member 36 (OsABCG36) (Pleiotropic drug resistance protein 9) (OsPDR9),ABC transporter G family member 44 (OsABCG44) (Pleiotropic drug resistance protein 17) (OsPDR17),ABC transporter G family member 53 (OsABCG53) (Pleiotropic drug resistance protein 20) (OsPDR20),Os01g0609300 protein (Fragment),Os08g0384500 protein (Fragment),Os01g0516900 protein Q8GU92,Q0JLC5,Q6YW62,A3BXL8,A0A0P0V529,A0A0P0XFJ4,A0A0P0V3M7,A0A0P0V522 AB35G_ORYSJ,AB36G_ORYSJ,AB44G_ORYSJ,AB53G_ORYSJ,A0A0P0V529_ORYSJ,A0A0P0XFJ4_ORYSJ,A0A0P0V3M7_ORYSJ,A0A0P0V522_ORYSJ ABCG35 PDR11 PDR2 Os01g0609200 LOC_Os01g42370 P0410E03.6,ABCG36 PDR3 PDR9 Os01g0609300 LOC_Os01g42380 P0410E03.7,ABCG44 PDR17 Os08g0384500 LOC_Os08g29570 B1090H08.39,ABCG53 PDR20 Os09g0332700 LOC_Os09g16330 OsJ_28928 OSJNBa0017I18.21 OSJNBb0095I04.27,Os01g0609300 OSNPB_010609300,Os08g0384500 OSNPB_080384500,Os01g0516900 OSNPB_010516900 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411DXAB Q8RXC4 Q8RXC4_ARATH At4g01860 (Transducin family protein / WD-40 repeat family protein) (Uncharacterized protein At4g01860) 144750 At4g01860 (Transducin family protein / WD-40 repeat family protein) (Uncharacterized protein At4g01860) Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2141395; AT4G01860 WD domain G-beta repeat Expressed protein (Os03g0111800 protein) Q10ST1 Q10ST1_ORYSJ LOC_Os03g02110 Os03g0111800 OSNPB_030111800 ENOG411DXAA Q9LP39,Q84W75,F4HZW2 Q9LP39_ARATH,Q84W75_ARATH,F4HZW2_ARATH Papain family cysteine protease (Peptidase C1A papain family protein) (Putative cysteine proteinase),Cysteine proteinases superfamily protein (Putative cysteine proteinase),Cysteine proteinases superfamily protein 38786,39937,38075 Papain family cysteine protease (Peptidase C1A papain family protein) (Putative cysteine proteinase),Cysteine proteinases superfamily protein (Putative cysteine proteinase),Cysteine proteinases superfamily protein extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2029934;,locus:2029924;,locus:2030027; AT1G29080,AT1G29090,AT1G29110 Inhibitor_I29 NA NA NA NA NA NA NA ENOG411DXAN LAC17 Q9FJD5,A0A1P8BCG5,A0A1P8BCH1 LAC17_ARATH,A0A1P8BCG5_ARATH,A0A1P8BCH1_ARATH Laccase-17 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 17) (Diphenol oxidase 17) (Urishiol oxidase 17),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ARA:AT5G60020-MONOMER;MetaCyc:AT5G60020-MONOMER; 1.10.3.2 63958,60510,60376 Laccase-17 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 17) (Diphenol oxidase 17) (Urishiol oxidase 17),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin biosynthetic process [GO:0009809]; lignin catabolic process [GO:0046274]; phenylpropanoid metabolic process [GO:0009698],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Ubiquitous with higher levels in the inflorescence stem. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2168128; AT5G60020 laccase-17-like Laccase-12 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 12) (Diphenol oxidase 12) (Urishiol oxidase 12),Laccase-13 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 13) (Diphenol oxidase 13) (Urishiol oxidase 13),Laccase-4 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 4) (Diphenol oxidase 4) (Urishiol oxidase 4),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase),Os05g0458600 protein (Fragment),Os01g0842400 protein (Fragment) B9FJH4,P0DKK6,Q5N9X2,Q8S2A8,A0A0P0WN76,A0A0P0VA69 LAC12_ORYSJ,LAC13_ORYSJ,LAC4_ORYSJ,Q8S2A8_ORYSJ,A0A0P0WN76_ORYSJ,A0A0P0VA69_ORYSJ LAC12 Os05g0458500 LOC_Os05g38410 OJ1362_D02.9 OsJ_018046,LAC13 Os05g0458600 LOC_Os05g38420 OJ1362_D02.10,LAC4 Os01g0842400 LOC_Os01g62480 OsJ_003940 P0406G08.11,Os01g0842500 OsJ_04040 OSNPB_010842500 P0406G08.13,Os05g0458600 OSNPB_050458600,Os01g0842400 OSNPB_010842400 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ENOG411DXAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene insensitive 3 Os08g0508700 protein (Putative ethylene-insensitive protein (EIL)) (cDNA clone:J023115E06, full insert sequence) Q6YVT1 Q6YVT1_ORYSJ Os08g0508700 B1168A08.22 OSJNBb0064I19.34 OSNPB_080508700 ENOG411DXA4 ALDH3H1,ALDH3I1 Q70DU8,Q8W033,A0A1P8B7C2,A0A1P8B7C0,F4JKM4 AL3H1_ARATH,AL3I1_ARATH,A0A1P8B7C2_ARATH,A0A1P8B7C0_ARATH,F4JKM4_ARATH Aldehyde dehydrogenase family 3 member H1 (AtALDH4) (Ath-ALDH4) (EC 1.2.1.3),Aldehyde dehydrogenase family 3 member I1, chloroplastic (AtALDH3) (Ath-ALDH3) (EC 1.2.1.3),Aldehyde dehydrogenase,Aldehyde dehydrogenase 3I1 DISRUPTION PHENOTYPE: Increased sensitivity to salt stress. {ECO:0000269|PubMed:22442412}. FUNCTION: Involved in oxidative stress tolerance by detoxifying reactive aldehydes derived from lipid peroxidation. Medium- to long-chain saturated aldehydes are preferred substrates, while the short-chain aldehyde propanal is a weak substrate. Is strictely NAD(+) specific. {ECO:0000269|PubMed:21166653}.,FUNCTION: Involved in oxidative stress tolerance by detoxifying reactive aldehydes derived from lipid peroxidation. Medium- to long-chain saturated aldehydes are preferred substrates, while the short-chain aldehyde propanal is a weak substrate. Can use both NAD(+) and NADP(+), but the coenzyme preference is substrate dependent. {ECO:0000269|PubMed:12904208, ECO:0000269|PubMed:21166653}. MISCELLANEOUS: Plants overexpressing ALDH3I1 show improved tolerance when exposed to dehydration, salt stress, heavy metals and H(2)O(2). ARA:AT1G44170-MONOMER;,ARA:AT4G34240-MONOMER; R-ATH-1660661;R-ATH-211945;R-ATH-389599;R-ATH-6798695; 1.2.1.3 53159,60173,44288,58497,42583 Aldehyde dehydrogenase family 3 member H1 (AtALDH4) (Ath-ALDH4) (EC 1.2.1.3),Aldehyde dehydrogenase family 3 member I1, chloroplastic (AtALDH3) (Ath-ALDH3) (EC 1.2.1.3),Aldehyde dehydrogenase,Aldehyde dehydrogenase 3I1 endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasmodesma [GO:0009506]; plastid [GO:0009536]; vacuole [GO:0005773]; 3-chloroallyl aldehyde dehydrogenase activity [GO:0004028]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; cellular aldehyde metabolic process [GO:0006081]; response to abscisic acid [GO:0009737]; response to desiccation [GO:0009269]; response to salt stress [GO:0009651],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; plastid [GO:0009536]; 3-chloroallyl aldehyde dehydrogenase activity [GO:0004028]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; aldehyde dehydrogenase (NADP+) activity [GO:0033721]; aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; cellular aldehyde metabolic process [GO:0006081]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414],aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; cellular aldehyde metabolic process [GO:0006081],oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Isoform alpha is expressed in expanded leaves and flowers. Detected in seedlings. Isoform beta is mainly expressed in flowers. Detected in leaves and seedlings. {ECO:0000269|PubMed:22442412}. locus:2205851;,locus:2116134; AT1G44170,AT4G34240 Aldehyde dehydrogenase Aldehyde dehydrogenase,Os12g0177900 protein,Os12g0178000 protein (Fragment) Q53NG8,A0A0P0Y7M6,A0A0P0Y7S8 Q53NG8_ORYSJ,A0A0P0Y7M6_ORYSJ,A0A0P0Y7S8_ORYSJ LOC_Os11g08300 Os11g0186200 OsJ_33226 OSNPB_110186200,Os12g0177900 OSNPB_120177900,Os12g0178000 OSNPB_120178000 ENOG411DXA3 Q8S9J3,F4IUP6 Q8S9J3_ARATH,F4IUP6_ARATH At2g32760 (At2g32760/F24L7.10) (UV radiation resistance-associated protein) (Uncharacterized protein At2g32755),UV radiation resistance-associated protein R-ATH-1632852; 39916,30846 At2g32760 (At2g32760/F24L7.10) (UV radiation resistance-associated protein) (Uncharacterized protein At2g32755),UV radiation resistance-associated protein endosome [GO:0005768]; lytic vacuole [GO:0000323]; SNARE binding [GO:0000149]; regulation of vesicle-mediated transport [GO:0060627]; SNARE complex assembly [GO:0035493] locus:2046362; AT2G32760 Inherit from KOG: UV radiation resistance Os06g0715000 protein Q5Z9Q2 Q5Z9Q2_ORYSJ Os06g0715000 Os06g0715000 OsJ_22656 OSNPB_060715000 P0481E08.10 ENOG411E1T2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411E1T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411E1T1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3675) Os05g0355300 protein B9FP36 B9FP36_ORYSJ Os05g0355300 OsJ_18197 OSNPB_050355300 ENOG411E1T6 MNS5 Q9SXC9 MNS5_ARATH Alpha-mannosidase I MNS5 (EC 3.2.1.-) FUNCTION: Can convert Man(9)GlcNAc(2) and Man(8)GlcNAc(2) into N-glycans with a terminal alpha-1,6-linked Man residue in the C-branch. Functions in the formation of unique N-glycan structures that are specifically recognized by components of the endoplasmic reticulum-associated degradation (ERAD) machinery, which leads to the degradation of misfolded glycoproteins. Most likely generates N-glycan signal on misfolded glycoproteins that is subsequently recognized by OS9. Required for ERAD of the heavily glycosylated and misfolded BRI1 variants BRI1-5 and BRI1-9. Does not seem to play role in N-glycan processing of correctly folded proteins destined for secretion. {ECO:0000269|PubMed:24737672}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. R-ATH-901032; 3.2.1.- 65708 Alpha-mannosidase I MNS5 (EC 3.2.1.-) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; alpha-mannosidase activity [GO:0004559]; calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]; N-glycan processing [GO:0006491]; protein glycosylation [GO:0006486]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2196874; AT1G27520 alpha-mannosidase I alpha-1,2-Mannosidase (EC 3.2.1.-) Q6Z7S1 Q6Z7S1_ORYSJ Os02g0741300 Os02g0741300 OsJ_08331 OSNPB_020741300 P0516G10.26 P0585G03.4 ENOG411E1T7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase Os07g0665000 protein,Os07g0664500 protein (cDNA, clone: J065025K09, full insert sequence),Os07g0663600 protein (cDNA clone:002-124-E09, full insert sequence),Os07g0664900 protein,Os07g0663500 protein,Os07g0664600 protein (Fragment) Q0D3U7,Q0D3U9,Q0D3V8,A0A0P0XAP6,A0A0P0X9T1,A0A0P0XAH4 Q0D3U7_ORYSJ,Q0D3U9_ORYSJ,Q0D3V8_ORYSJ,A0A0P0XAP6_ORYSJ,A0A0P0X9T1_ORYSJ,A0A0P0XAH4_ORYSJ Os07g0665000 Os07g0665000 OsJ_25484 OSNPB_070665000,Os07g0664500 Os07g0664500 OsJ_25481 OSNPB_070664500,Os07g0663600 Os07g0663600 OSNPB_070663600,Os07g0664900 OSNPB_070664900,Os07g0663500 OSNPB_070663500,Os07g0664600 OSNPB_070664600 ENOG411E1T4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione S-transferase zeta class-like NA NA NA NA NA NA NA ENOG411E1T8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family Os01g0588000 protein (cDNA clone:002-150-D11, full insert sequence) Q8S1F2 Q8S1F2_ORYSJ Os01g0588000 OsJ_02403 OSNPB_010588000 P0700A11.18 ENOG411E1WH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region Zinc-finger homeodomain protein 7 (OsZHD7) Q8S3Q9 ZHD7_ORYSJ ZHD7 Os02g0706600 LOC_Os02g47770 49D11.22 OSJNBb0060O16.6 P0680A05.32 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411E1TB NHL1,NHL12,F22O6_150,MHF15.15,NHL22 Q9SRN0,Q9SJ54,Q9SVC8,Q9FNH5,Q9SJ53,Q9SST3,Q3E9K9 NHL1_ARATH,NHL12_ARATH,Q9SVC8_ARATH,Q9FNH5_ARATH,Q9SJ53_ARATH,Q9SST3_ARATH,Q3E9K9_ARATH NDR1/HIN1-like protein 1,NDR1/HIN1-like protein 12,Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Putative harpin-induced protein) (Uncharacterized protein At3g52470) (Uncharacterized protein F22O6_150),At5g06330 (Harpin-induced protein-like) (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Putative harpin-induced protein),NDR1/HIN1-like 22 (Uncharacterized protein AT4g09590),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein FUNCTION: May play a role in plant immunity. {ECO:0000250|UniProtKB:Q9ZVD2}. 23664,23263,23098,23130,23162,23220,15651 NDR1/HIN1-like protein 1,NDR1/HIN1-like protein 12,Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Putative harpin-induced protein) (Uncharacterized protein At3g52470) (Uncharacterized protein F22O6_150),At5g06330 (Harpin-induced protein-like) (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Putative harpin-induced protein),NDR1/HIN1-like 22 (Uncharacterized protein AT4g09590),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response to virus [GO:0051607],anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952],anchored component of plasma membrane [GO:0046658]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves, stems, and siliques, and at lower levels in roots and flowers. {ECO:0000269|PubMed:14666423}.,TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, and, to a lower extent, in siliques and roots. {ECO:0000269|PubMed:14666423}. locus:2098368;,locus:2039210;,locus:2079879;,locus:2164315;,locus:2039200;,locus:2136887;,locus:1005716815; AT3G11660,AT2G35960,AT3G52470,AT5G06330,AT2G35970,AT4G09590,AT5G05657 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E1TD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UV radiation resistance Os05g0490500 protein (Fragment) A0A0P0WNY6 A0A0P0WNY6_ORYSJ Os05g0490500 OSNPB_050490500 ENOG411E1TE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os10g0109900 protein A0A0P0XQZ1 A0A0P0XQZ1_ORYSJ Os10g0109900 OSNPB_100109900 ENOG411E1TK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein heavy chain N-terminal region 1 NA NA NA NA NA NA NA ENOG411E1TH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif family protein Os05g0595300 protein (cDNA clone:001-030-F12, full insert sequence),Os05g0595300 protein Q5TKF5,Q0DFE5 Q5TKF5_ORYSJ,Q0DFE5_ORYSJ Os05g0595300 OSJNBa0030I14.11 OSJNBb0086G17.2 OSNPB_050595300,Os05g0595300 Os05g0595300 OSNPB_050595300 ENOG411E1TI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione S-transferase, N-terminal domain containing protein, expressed (Glutathione S-transferase, putative) (Os03g0643700 protein) (cDNA clone:002-168-C01, full insert sequence) Q60DP1 Q60DP1_ORYSJ LOC_Os03g44170 Os03g0643700 OSJNBa0038E17.17 OSNPB_030643700 ENOG411E1TM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyroglutamyl peptidase Os07g0639600 protein (Pyrrolidone carboxyl peptidase-like protein),Os03g0367900 protein (Putative pyrrolidone carboxyl peptidase) (Pyrrolidone-carboxylate peptidase family protein, expressed) (cDNA clone:001-045-C05, full insert sequence) (cDNA clone:J013023I17, full insert sequence),Os09g0396300 protein (Pyrrolidone carboxyl peptidase-like protein) Q8GVF6,Q10KW4,Q6ERE8 Q8GVF6_ORYSJ,Q10KW4_ORYSJ,Q6ERE8_ORYSJ OJ1340_C08.130 Os07g0639600 OSNPB_070639600,LOC_Os03g25270 Os03g0367900 OsJ_10980 OSJNBa0013M12.1 OSNPB_030367900,Os09g0396300 OJ1655_B12.2 OsJ_29259 OSNPB_090396300 ENOG411E1TR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance protein At3g14460-like NA NA NA NA NA NA NA ENOG411E1TS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase Plasma membrane ATPase (EC 3.6.3.6) A0A0P0VQP6 A0A0P0VQP6_ORYSJ Os02g0797300 OSNPB_020797300 ENOG411E1TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0246100 protein A0A0P0XDJ1 A0A0P0XDJ1_ORYSJ Os08g0246100 OSNPB_080246100 ENOG411E1TV MOJ9.19 Q9FL44 Q9FL44_ARATH Proline-rich family protein (Uncharacterized protein At5g07020) FUNCTION: Interacts with photosystem II (PSII) core complexes and participates in the maintenance of normal PSII activity under photoinhibitory stress. May protect against photodamage or stabilize PSII under high-light stress (PubMed:25846821). Participates in the maintainance of proper PSII function under high-light stress by protecting PSII from photooxidative damage (PubMed:26337456). {ECO:0000269|PubMed:25846821, ECO:0000269|PubMed:26337456}. 24395 Proline-rich family protein (Uncharacterized protein At5g07020) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; regulation of protein complex stability [GO:0061635]; response to cytokinin [GO:0009735] locus:2169359; AT5G07020 NA Os02g0556800 protein (Proline-rich family protein-like) (cDNA clone:001-023-G04, full insert sequence) (cDNA clone:J023033O22, full insert sequence) Q6ZI79 Q6ZI79_ORYSJ Os02g0556800 OJ1008_F08.20 OSNPB_020556800 ENOG411E1TW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Probable protein ABIL5 (Abl interactor-like protein 5) Q5JMF2 ABIL5_ORYSJ Os01g0760900 LOC_Os01g55560 P0460E08.23 P0512C01.12 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411E1TZ RPL17 Q9M385 RK17_ARATH 50S ribosomal protein L17, chloroplastic (CL17) FUNCTION: This protein binds directly to 23S ribosomal RNA. {ECO:0000250}. 23481 50S ribosomal protein L17, chloroplastic (CL17) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic large ribosomal subunit [GO:0022625]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2080335; AT3G54210 ribosomal protein L17 50S ribosomal protein L17, putative, expressed (Os03g0815400 protein) (Ribosomal protein L17-like protein) (cDNA clone:006-304-A06, full insert sequence) Q75GR6 Q75GR6_ORYSJ Os03g0815400 LOC_Os03g60100 Os03g0815400 OsJ_13095 OSJNBb0042K11.2 OSNPB_030815400 ENOG411E1TX WRKY30 Q9FL62 WRK30_ARATH Probable WRKY transcription factor 30 (WRKY DNA-binding protein 30) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 33985 Probable WRKY transcription factor 30 (WRKY DNA-binding protein 30) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; response to hydrogen peroxide [GO:0042542]; response to ozone [GO:0010193]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] locus:2167428; AT5G24110 Transcription factor Os06g0158100 protein (Transcription factor WRKY35) Q5VMX9 Q5VMX9_ORYSJ Os06g0158100 Os06g0158100 OSNPB_060158100 P0046E09.34 P0702F05.14 ENOG411E1TY AHL14 A1L4X7,F4J4T1,F4K8J6 AHL14_ARATH,F4J4T1_ARATH,F4K8J6_ARATH AT-hook motif nuclear-localized protein 14,AT hook motif DNA-binding family protein,DNA-binding family protein FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 43446,32577,22536 AT-hook motif nuclear-localized protein 14,AT hook motif DNA-binding family protein,DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2084983;,locus:2179053; AT3G04590,AT5G28590 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411E1W8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os08g0276200 protein (Fragment) Q0J6R8 Q0J6R8_ORYSJ Os08g0276200 Os08g0276200 OSNPB_080276200 ENOG411EBV7 F4HZT7 F4HZT7_ARATH Uncharacterized protein 51742 Uncharacterized protein locus:2030556; AT1G22120 NA NA NA NA NA NA NA NA ENOG411EBV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EBV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBV4 LPP4 Q0WNG6 LPP4_ARATH Probable lipid phosphate phosphatase 4 (AtLPP4) (EC 3.1.3.-) (Phosphatidic acid phosphatase 4) (AtPAP4) R-ATH-2029485; 3.1.3.- 35102 Probable lipid phosphate phosphatase 4 (AtLPP4) (EC 3.1.3.-) (Phosphatidic acid phosphatase 4) (AtPAP4) integral component of membrane [GO:0016021]; phosphatidate phosphatase activity [GO:0008195] locus:2089643; AT3G18220 acidPPc NA NA NA NA NA NA NA ENOG411EBV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH NA NA NA NA NA NA NA ENOG411EBV2 RZF1 Q94AK4 RZF1_ARATH E3 ubiquitin-protein ligase RZF1 (EC 2.3.2.27) (RING-H2 zinc finger protein 1) (AtRZF1) DISRUPTION PHENOTYPE: Reduced sensitivity to osmotic stress during early seedling development. Increased proline accumulation and higher expression of stress-related genes (e.g. RAB18, RD29A, RD29B, AOX1A, ERD15, ERD1, COR15A, P5CS1 and P5CR) under drought stress. {ECO:0000269|PubMed:23415322}. FUNCTION: E3 ubiquitin-protein ligase that promotes osmotic stress responses. Regulates negatively drought-mediated control of early seedling development, probably by influencing proline content, water loss, membrane ion leakage and the expression of dehydration stress-related genes (e.g. RAB18, RD29A, RD29B, AOX1A, ERD15, ERD1, COR15A, P5CS1 and P5CR). {ECO:0000269|PubMed:23415322}. R-ATH-983168; 2.3.2.27 35791 E3 ubiquitin-protein ligase RZF1 (EC 2.3.2.27) (RING-H2 zinc finger protein 1) (AtRZF1) metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; negative regulation of proline biosynthetic process [GO:1902006]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of response to osmotic stress [GO:0047484]; regulation of response to water deprivation [GO:2000070]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414]; water homeostasis [GO:0030104] DEVELOPMENTAL STAGE: In seedlings, especially present in the vascular system. In flowers, observed in sepals, anthers of stamen, and pollen. {ECO:0000269|PubMed:23415322}. TISSUE SPECIFICITY: Expressed in seedlings and in flowers. {ECO:0000269|PubMed:23415322}. locus:2102569; AT3G56580 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EBV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO NA NA NA NA NA NA NA ENOG411EBV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EBVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium Bile acid symporter family NA NA NA NA NA NA NA ENOG411EBVF T14P4.18 Q9FWX5,F4JG70 Q9FWX5_ARATH,F4JG70_ARATH At1g02460 (Pectin lyase-like superfamily protein) (Putative polygalacturonase),Pectin lyase-like superfamily protein ARA:AT1G02460-MONOMER; 53463,50677 At1g02460 (Pectin lyase-like superfamily protein) (Putative polygalacturonase),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2196055;,locus:2141345; AT1G02460,AT4G01890 glycoside hydrolase family 28 protein NA NA NA NA NA NA NA ENOG411EBVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3741) NA NA NA NA NA NA NA ENOG411EBVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os03g0679800 protein (Fragment),Os03g0680100 protein (Fragment) A0A0N7KHT9,A0A0P0W245 A0A0N7KHT9_ORYSJ,A0A0P0W245_ORYSJ Os03g0679800 OSNPB_030679800,Os03g0680100 OSNPB_030680100 ENOG411EBVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0608700 protein A0A0P0YC38 A0A0P0YC38_ORYSJ Os12g0608700 OSNPB_120608700 ENOG411EBVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPT NA NA NA NA NA NA NA ENOG411EBVN IP5P14,IP5P13,5PTASE13,5PTase14 Q9SKB7,Q9SYK4,A0A1P8AU01,A0A1P8AZ51,F4IRT2 IP5PE_ARATH,IP5PD_ARATH,A0A1P8AU01_ARATH,A0A1P8AZ51_ARATH,F4IRT2_ARATH Type II inositol polyphosphate 5-phosphatase 14 (At5PTase14) (EC 3.1.3.36) (EC 3.1.3.86),Type I inositol polyphosphate 5-phosphatase 13 (At5PTase13) (EC 3.1.3.56),Endonuclease/exonuclease/phosphatase family protein DISRUPTION PHENOTYPE: Defect in development of the cotyledon veins. Altered auxin homeostasis and reduced abscisic acid sensitivity. Shortened hypocotyls and expanded cotyledons in response to blue light irradiation. Precocious pollen germination within anthers. Elevated sensitivity to gravistimulation in root gravitropic responses. {ECO:0000269|PubMed:16299182, ECO:0000269|PubMed:18252844, ECO:0000269|PubMed:18931139, ECO:0000269|PubMed:19736566, ECO:0000269|PubMed:22573619}. Compared to wild-type plants cotyledon veins of At5pt13-1 were with altered numbers (4%) in incorrect vein orientation (16.3%) with additional or altered loops (1.7%) with branches (1.3%) with intersections (1.3%) and fusions (5.3%) of the distal and proximal secondary veins or with acute angles (3.3%). In addition the cotyledon veins of At5pt13-1 were asymmetric with flexed secondary veins and often multiple abnormalities such as asymmetry abnormal caecal orientation or flex (10.7%). Statistical analyses revealed that around 64.7% of the total cotyledons showed obvious abnormality while the ratio of seedlings with abnormal cotyledons reaches to approximately 90%. Altered vein patterning in cotyledons-H. Xue-2005 FUNCTION: Has phosphatase activity toward PtdIns(4,5)P2, PtdIns(3,4,5)P3 and Ins(1,4,5)P3. {ECO:0000269|PubMed:15574849}.,FUNCTION: Converts inositol 1,4,5-trisphosphate (Ins(1,4,5)P3) to inositol 1,4-bisphosphate. Modulates cotyledon vein development through regulating auxin homeostasis. Involved in blue light responses. Decreases the amount of KIN10 degraded by the proteasome under low nutrient conditions. Participates with IP5P12 in the control of Ins(1,4,5)P3/Ca(2+) levels that is crucial for maintaining pollen dormancy and regulating early germination of pollen. May modulate auxin transport by regulating vesicle trafficking and thereby plays a role in root gravitropism. {ECO:0000269|PubMed:15574849, ECO:0000269|PubMed:16299182, ECO:0000269|PubMed:18252844, ECO:0000269|PubMed:18931139, ECO:0000269|PubMed:19736566, ECO:0000269|PubMed:22573619}. ARA:AT1G05630-MONOMER;MetaCyc:AT1G05630-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.36;,3.1.3.36;3.1.3.56; 3.1.3.36; 3.1.3.86,3.1.3.56 125708,125698,101331,99113,129172 Type II inositol polyphosphate 5-phosphatase 14 (At5PTase14) (EC 3.1.3.36) (EC 3.1.3.86),Type I inositol polyphosphate 5-phosphatase 13 (At5PTase13) (EC 3.1.3.56),Endonuclease/exonuclease/phosphatase family protein metal ion binding [GO:0046872]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; phosphatidylinositol dephosphorylation [GO:0046856],nucleus [GO:0005634]; inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity [GO:0052659]; inositol-1,4,5-trisphosphate 5-phosphatase activity [GO:0052658]; inositol-polyphosphate 5-phosphatase activity [GO:0004445]; metal ion binding [GO:0046872]; auxin homeostasis [GO:0010252]; gravitropism [GO:0009630]; inositol phosphate dephosphorylation [GO:0046855]; phloem or xylem histogenesis [GO:0010087]; phosphatidylinositol dephosphorylation [GO:0046856]; pollen germination [GO:0009846]; response to abscisic acid [GO:0009737]; response to blue light [GO:0009637]; response to carbohydrate [GO:0009743]; response to nutrient [GO:0007584]; response to wounding [GO:0009611]; root development [GO:0048364]; sugar mediated signaling pathway [GO:0010182],integral component of membrane [GO:0016021]; endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; phosphatidylinositol dephosphorylation [GO:0046856],endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; phosphatidylinositol dephosphorylation [GO:0046856],endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; inositol-1,4,5-trisphosphate 5-phosphatase activity [GO:0052658]; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; inositol phosphate dephosphorylation [GO:0046855]; phosphatidylinositol dephosphorylation [GO:0046856] DEVELOPMENTAL STAGE: Detected in cotyledons prior to seed germination. Restricted to the cotyledon tip until 2 days after seed germination and then detected in the cotyledon or cotyledon veins on days 3 to 7. {ECO:0000269|PubMed:16299182}. TISSUE SPECIFICITY: Expressed in young seedlings and flowers. {ECO:0000269|PubMed:15574849}.,TISSUE SPECIFICITY: Expressed in young seedlings and flowers. Highly expressed in anther and pollen grains, but not in pistils. Not detected in maturated roots, stems and rosette leaves. {ECO:0000269|PubMed:15574849, ECO:0000269|PubMed:16299182, ECO:0000269|PubMed:22573619}. locus:2031933;,locus:2045218; AT2G31830,AT1G05630 Endonuclease Exonuclease phosphatase family protein NA NA NA NA NA NA NA ENOG411EBVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ac Ds sub-class Os06g0328650 protein (Fragment) A0A0P0WW69 A0A0P0WW69_ORYSJ Os06g0328650 OSNPB_060328650 ENOG411EBVK MAP70.3,MAP70-3 Q9ZUA3,F4IPB2 MP703_ARATH,F4IPB2_ARATH Microtubule-associated protein 70-3 (AtMAP70-3) (70 kDa microtubule-associated protein 3),Microtubule-associated proteins 70-3 FUNCTION: Plant-specific protein that interact with microtubules. {ECO:0000250}. 69772,69860 Microtubule-associated protein 70-3 (AtMAP70-3) (70 kDa microtubule-associated protein 3),Microtubule-associated proteins 70-3 cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; cytoskeleton organization [GO:0007010],microtubule [GO:0005874]; plasma membrane [GO:0005886]; microtubule binding [GO:0008017]; cytoskeleton organization [GO:0007010] locus:2065413; AT2G01750 Myosin II heavy chain-like NA NA NA NA NA NA NA ENOG411EBVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjC domain hydroxylase NA NA NA NA NA NA NA ENOG411EBVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response to cadmium ion Probable aldo-keto reductase 3 (EC 1.1.1.-) Q7XQ45 AKR3_ORYSJ Os04g0339400 LOC_Os04g27060 OsJ_14323 OSJNBa0032I19.9 ENOG411EBVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411EBVW ''cytochrome P450 Q9SX95 Q9SX95_ARATH At1g47620 (Cytochrome P450, family 96, subfamily A, polypeptide 8) (F16N3.8 protein) (Uncharacterized protein At1g47620) ARA:GQT-870-MONOMER; 59733 At1g47620 (Cytochrome P450, family 96, subfamily A, polypeptide 8) (F16N3.8 protein) (Uncharacterized protein At1g47620) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2015408; AT1G47620 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EBVV T30F21.20 Q9SYN5 Q9SYN5_ARATH AT1G78460 protein (F3F9.3) (SOUL heme-binding family protein) (T30F21.20 protein) R-ATH-6798695; 24250 AT1G78460 protein (F3F9.3) (SOUL heme-binding family protein) (T30F21.20 protein) locus:2032055; AT1G78460 soul heme-binding NA NA NA NA NA NA NA ENOG411EBVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EBVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBVS CSLA1 Q84W54 CSLA1_ARATH Probable mannan synthase 1 (EC 2.4.1.-) (Cellulose synthase-like protein A1) (AtCslA1) FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q9LZR3}. ARA:AT4G16590-MONOMER; 2.4.1.- 64103 Probable mannan synthase 1 (EC 2.4.1.-) (Cellulose synthase-like protein A1) (AtCslA1) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2130844; AT4G16590 Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411EBVR PER69 Q96511 PER69_ARATH Peroxidase 69 (Atperox P69) (EC 1.11.1.7) (ATP3a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G64100-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35679 Peroxidase 69 (Atperox P69) (EC 1.11.1.7) (ATP3a) cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Mainly expressed in roots and slightly in leaves. {ECO:0000269|PubMed:9807821, ECO:0000269|Ref.7}. locus:2164426; AT5G64100 Peroxidase NA NA NA NA NA NA NA ENOG411EBVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) OSJNBb0089B03.14 protein (Os04g0380500 protein) (cDNA clone:002-102-F10, full insert sequence),OSJNBa0006M15.9 protein (Os04g0454300 protein),Os04g0388000 protein Q7XNP7,Q7X8Y2,A0A0P0W9C4 Q7XNP7_ORYSJ,Q7X8Y2_ORYSJ,A0A0P0W9C4_ORYSJ Os04g0380500 Os04g0380500 OsJ_14522 OSJNBb0089B03.14 OSNPB_040380500,OSJNBa0006M15.9 Os04g0454300 OSNPB_040454300,Os04g0388000 OSNPB_040388000 ENOG411EBVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EBVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reversibly glycosylated polypeptide NA NA NA NA NA NA NA ENOG411EBVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E59E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os02g0669500 protein (Fragment),Os02g0669600 protein A0A0P0VMN8,A0A0P0VN35 A0A0P0VMN8_ORYSJ,A0A0P0VN35_ORYSJ Os02g0669500 OSNPB_020669500,Os02g0669600 OSNPB_020669600 ENOG411E57R Q9SZ21,Q9SZ22 Q9SZ21_ARATH,Q9SZ22_ARATH At4g26810 (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein AT4g26810) (Uncharacterized protein F10M23.150),GrpE-like protein (Uncharacterized protein AT4g26820) (Uncharacterized protein F10M23.160) 12210,27069 At4g26810 (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein AT4g26810) (Uncharacterized protein F10M23.150),GrpE-like protein (Uncharacterized protein AT4g26820) (Uncharacterized protein F10M23.160) integral component of membrane [GO:0016021] locus:2116302;,locus:2116312; AT4G26810,AT4G26820 domain--containing protein Os09g0133000 protein (SWIB complex BAF60b domain-containing protein-like) Q6K448 Q6K448_ORYSJ Os09g0133000 OsJ_28454 OSJNBa0095O23.41 OSNPB_090133000 P0406E03.15 ENOG411EDC6 ARF11 Q9ZPY6 ARFK_ARATH Auxin response factor 11 no obvious auxin-related growth phenotype FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. 69663 Auxin response factor 11 nucleus [GO:0005634]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; transcription, DNA-templated [GO:0006351] locus:2039124; AT2G46530 Auxin response factor NA NA NA NA NA NA NA ENOG411EDC2 CYP705A19,CYP705A8,CYP705A21,dl3720w,CYP705A30,CYP705A32,CYP705A9,CYP705A28 Q9LJY8,Q9ZVD7,Q9LJY6,O23391,Q9LIG9,F4JDI1,Q9LIG8,Q9ZVD6,F4JA71,F4IWB9 Q9LJY8_ARATH,Q9ZVD7_ARATH,Q9LJY6_ARATH,O23391_ARATH,Q9LIG9_ARATH,F4JDI1_ARATH,Q9LIG8_ARATH,Q9ZVD6_ARATH,F4JA71_ARATH,F4IWB9_ARATH AT3g20100/MAL21_14 (Cytochrome P450, family 705, subfamily A, polypeptide 19) (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 8 (Putative cytochrome P450),Cytochrome P450, family 705, subfamily A, polypeptide 21 (Cytochrome P450-like protein),Cytochrome P450 like protein (Cytochrome P450, family 705, subfamily A, polypeptide 2) (Putative cytochrome P450 protein),Cytochrome P450, family 705, subfamily A, polypeptide 30 (Cytochrome P450-like protein) (Putative cytochrome P450),Cytochrome P450, family 705, subfamily A, polypeptide 21,Cytochrome P450, family 705, subfamily A, polypeptide 32 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 9 (Putative cytochrome P450),Cytochrome P450 superfamily protein,Cytochrome P450, family 705, subfamily A, polypeptide 28 ARA:AT3G20100-MONOMER;,ARA:AT2G27000-MONOMER;,ARA:AT4G15350-MONOMER;,ARA:AT3G20940-MONOMER;,ARA:AT3G20950-MONOMER;,ARA:AT2G27010-MONOMER; 58261,58272,57943,58395,59570,42867,59437,56291,57084,39532 AT3g20100/MAL21_14 (Cytochrome P450, family 705, subfamily A, polypeptide 19) (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 8 (Putative cytochrome P450),Cytochrome P450, family 705, subfamily A, polypeptide 21 (Cytochrome P450-like protein),Cytochrome P450 like protein (Cytochrome P450, family 705, subfamily A, polypeptide 2) (Putative cytochrome P450 protein),Cytochrome P450, family 705, subfamily A, polypeptide 30 (Cytochrome P450-like protein) (Putative cytochrome P450),Cytochrome P450, family 705, subfamily A, polypeptide 21,Cytochrome P450, family 705, subfamily A, polypeptide 32 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 9 (Putative cytochrome P450),Cytochrome P450 superfamily protein,Cytochrome P450, family 705, subfamily A, polypeptide 28 membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2087570;,locus:2059299;,locus:2130010;,locus:2088761;,locus:2087600;,locus:2088766;,locus:2059309;,locus:2828708;,locus:2829500; AT3G20100,AT2G27000,AT4G15350,AT3G20940,AT3G20120,AT3G20950,AT2G27010,AT3G32047,AT3G20935 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EDC3 SSL9 Q9M1J6 SSL9_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 9 (AtSSL9) (Strictosidine synthase 6) (AtSS6) ARA:AT3G57020-MONOMER; 41458 Protein STRICTOSIDINE SYNTHASE-LIKE 9 (AtSSL9) (Strictosidine synthase 6) (AtSS6) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058] locus:2080565; AT3G57020 Strictosidine synthase family protein NA NA NA NA NA NA NA ENOG411EDC0 KCS9 Q9SIX1 KCS9_ARATH 3-ketoacyl-CoA synthase 9 (KCS-9) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 9) (VLCFA condensing enzyme 9) DISRUPTION PHENOTYPE: No visible phenotype, but significant reduction in C24 VLCFAs and accumulation of C20 and C22 VLCFAs. {ECO:0000269|PubMed:23585652}. FUNCTION: Involved in the elongation of C22 to C24 fatty acids, which are precursors for the biosynthesis of cuticular waxes, aliphatic suberins, and membrane lipids, including sphingolipids and phospholipids. {ECO:0000269|PubMed:23585652}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT2G16280-MONOMER; 2.3.1.199 57973 3-ketoacyl-CoA synthase 9 (KCS-9) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 9) (VLCFA condensing enzyme 9) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in seedlings, stems, leaves, flowers and siliques (PubMed:18465198). Expressed in roots, leaves, and stems, including epidermis, silique walls, sepals, the upper portion of the styles, and seed coats, but not in developing embryos (PubMed:23585652). {ECO:0000269|PubMed:18465198, ECO:0000269|PubMed:23585652}. locus:2042684; AT2G16280 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411E2UM RPS24A,RPS24B Q9SS17,Q8LC83,A0A1I9LMY7 RS241_ARATH,RS242_ARATH,A0A1I9LMY7_ARATH 40S ribosomal protein S24-1,40S ribosomal protein S24-2,40S ribosomal protein S24 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15372,15419,12909 40S ribosomal protein S24-1,40S ribosomal protein S24-2,40S ribosomal protein S24 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cell wall [GO:0005618]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],integral component of membrane [GO:0016021]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2114830;,locus:2143784; AT3G04920,AT5G28060 40S ribosomal protein S24 40S ribosomal protein S24 (Fragment),40S ribosomal protein S24 Q0DBK8,Q6H541 Q0DBK8_ORYSJ,Q6H541_ORYSJ Os06g0555400 Os06g0555400 OSNPB_060555400,Os02g0229000 OSJNBb0035N08.11 OSNPB_020229000 P0620H05.37 ENOG411E2UR Q9XIJ0,Q93W05 Q9XIJ0_ARATH,Q93W05_ARATH Nucleic acid-binding, OB-fold-like protein (T10O24.24),At1g10590/F20B24_1 (Nucleic acid-binding, OB-fold-like protein) (Uncharacterized protein At1g10590) 17122,15455 Nucleic acid-binding, OB-fold-like protein (T10O24.24),At1g10590/F20B24_1 (Nucleic acid-binding, OB-fold-like protein) (Uncharacterized protein At1g10590) plasma membrane [GO:0005886]; mRNA binding [GO:0003729] locus:2019918; AT1G10590 Inherit from euNOG: DNA-binding protein-related Os05g0100800 protein (cDNA clone:J023064B05, full insert sequence) Q9FW37 Q9FW37_ORYSJ Os05g0100800 OsJ_16770 OSJNBb0098I11.6 OSNPB_050100800 P0036D10.5 ENOG411E2UP PCR10 Q8S8T8 PCR10_ARATH Protein PLANT CADMIUM RESISTANCE 10 (AtPCR10) FUNCTION: May be involved in cadmium resistance. {ECO:0000269|PubMed:15181212}. 20799 Protein PLANT CADMIUM RESISTANCE 10 (AtPCR10) integral component of membrane [GO:0016021] locus:505006313; AT2G40935 Protein PLANT CADMIUM RESISTANCE Os01g0267400 protein (cDNA, clone: J080051F22, full insert sequence) B7F9H9 B7F9H9_ORYSJ Os01g0267400 OSNPB_010267400 ENOG411E2UW Q9C9F7 Q9C9F7_ARATH Aerobic coproporphyrinogen-III oxidase (DUF1218) (Uncharacterized protein At1g68220; T22E19.15) (Uncharacterized protein T22E19.15) 21411 Aerobic coproporphyrinogen-III oxidase (DUF1218) (Uncharacterized protein At1g68220; T22E19.15) (Uncharacterized protein T22E19.15) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2199332; AT1G68220 fiber protein Fb34 Os08g0261100 protein (cDNA clone:J013160C06, full insert sequence) Q6Z608 Q6Z608_ORYSJ Os08g0261100 B1063H10.20 OSNPB_080261100 ENOG411E2UT RPL24B,RPL24A P38666,Q42347 RL242_ARATH,RL241_ARATH 60S ribosomal protein L24-2 (Protein SHORT VALVE 1),60S ribosomal protein L24-1 Defects in apical-basal gynoecium patterning (similar to ett and mp mutants). Mutant plant gynoecia had shorter ovaries and longer gynophores than the wild type but the total length of the gynoecium is normal before pollination. After pollination the gynoecium of failed to elongate resulting in shorter siliques which contained arrested seeds resulting in lower fertility. The stv1-1 ovules had shorter integuments than wild-type ones and in some extreme cases the gametophyte was protruding from the integuments. Mutant plants had defects in vascular system and embryo organization which are also associated with auxin signaling. Most cotyledons in mutant plants had abnormal vascular patterns that were asymmetric and/or disconnected. Cotyledons were occasionally fused or single indicating that stv1-1 is associated with defects in embryo patterning. Growth was retarded in both aerial and underground parts of stv1-1 mutants resulting in plants that were smaller overall than the wild type. In stv1-1 roots growth rates were reduced while leaves were smaller than wild-type ones and pointed. These phenotypic observations suggested that STV1 had pleiotropic effects on whole-plant development in addition to specific effects on organs and tissues affected by known auxin signaling mutations.,The gynoecia of double mutants showed severe reduction of the ovary and morphological abnormalities in the apical region that were similar to ett strong allele mutant phenotypes. Occasionally inflorescences of the double mutant failed to produce any normal flower buds resulting in pin-like structures that were not found in either stv1 or ett single mutants. Pin-like inflorescences are formed in mp pid and pin1 mutants and in wild-type plants treated with polar auxin transport inhibitors. Low penetrance of fused cotyledons and decreased cotyledon number; Dwarf; Small, pointed leaves; Slow root growth; Abnormal pistil morphology; Short integuments; Reduced fertility; Abnormal cotyledon vasculature-K. Okada-2005 FUNCTION: Might have an extraribosomal function in reinitiation of translation of ETTIN and MONOPTEROS genes that are involved in the auxin-mediated gynoecium patterning. {ECO:0000269|PubMed:16227452}.,FUNCTION: Might have an extraribosomal function in reinitiation of translation. {ECO:0000269|PubMed:11572778}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 18632,18850 60S ribosomal protein L24-2 (Protein SHORT VALVE 1),60S ribosomal protein L24-1 cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; assembly of large subunit precursor of preribosome [GO:1902626]; auxin-activated signaling pathway [GO:0009734]; gynoecium development [GO:0048467]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; plasma membrane [GO:0005886]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; assembly of large subunit precursor of preribosome [GO:1902626]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16227452}. locus:2085246;,locus:2040555; AT3G53020,AT2G36620 ribosomal protein Os01g0815800 protein (Putative 60S ribosomal protein L24) (cDNA clone:001-018-A11, full insert sequence) (cDNA clone:J033071P12, full insert sequence),Os05g0486700 protein (Putative 60S ribosomal protein L24) (cDNA clone:001-027-F02, full insert sequence),Os07g0224000 protein Q5N754,Q75KZ3,A0A0P0X424 Q5N754_ORYSJ,Q75KZ3_ORYSJ,A0A0P0X424_ORYSJ Os01g0815800 OsJ_03860 OSJNBa0085D07.41 OSNPB_010815800,Os05g0486700 OJ1004_E02.9 OsJ_18994 OSNPB_050486700,Os07g0224000 OSNPB_070224000 ENOG411DTII KIN7F,KIN7I,KIN7E F4JUI9,F4JQ51,F4IGL2 KN7F_ARATH,KN7I_ARATH,KN7E_ARATH Kinesin-like protein KIN-7F,Kinesin-like protein KIN-7I,Kinesin-like protein KIN-7E 94464,114520,96671 Kinesin-like protein KIN-7F,Kinesin-like protein KIN-7I,Kinesin-like protein KIN-7E kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2120272;,locus:2135006;,locus:2050115; AT4G38950,AT4G24170,AT2G21300 kinesin motor Kinesin-like protein KIN-7F Q7X7H4 KN7F_ORYSJ KIN7F K23 Os04g0538800 LOC_Os04g45580 OsJ_15615 OSJNBa0011L07.1 OSJNBa0091D06.23 OSNPB_040538800 FUNCTION: Binds ATP/ADP in vitro. Possesses low ATPase activity but high affinity for microtubules. {ECO:0000269|PubMed:21278385}. ENOG411DTIN Q570G3,F4JEJ3 Q570G3_ARATH,F4JEJ3_ARATH At3g13800 (Hydrolase like protein) (Metallo-hydrolase/oxidoreductase superfamily protein),Metallo-hydrolase/oxidoreductase superfamily protein 40383,31512 At3g13800 (Hydrolase like protein) (Metallo-hydrolase/oxidoreductase superfamily protein),Metallo-hydrolase/oxidoreductase superfamily protein hydrolase activity [GO:0016787] locus:2087974; AT3G13800 Metallo-beta-lactamase superfamily Os09g0363800 protein A0A0P0XKQ4 A0A0P0XKQ4_ORYSJ Os09g0363800 OSNPB_090363800 ENOG411DTIM GALT3,GALT1 Q9ASW1,Q8L7F9 B3GTG_ARATH,B3GTF_ARATH Hydroxyproline O-galactosyltransferase GALT3 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 16),Beta-1,3-galactosyltransferase GALT1 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 15) (Galactosyltransferase 1) DISRUPTION PHENOTYPE: Reduced levels of arabinogalactan proteins. Root hair defects. Reduced seed coat mucilage. Increased sensitivity to salt stress. {ECO:0000269|PubMed:26690932}. In contrast with wild-type plants no Lea-containing peaks were found in extracts of the mutant.,Mutant lines did not display a detectable signal with JIM84 (a monoclonal antibody specifically binding to Lea structures on plant N-glycans) whereas in wild-type plants a strong staining was visible.,No visible phenotype. FUNCTION: Possesses hydroxyproline O-galactosyltransferase activity. Transfers galactose from UDP-galactose to hydroxyproline residues in the arabinogalactan proteins (AGPs). Is specific for AGPs containing non-contiguous peptidyl hydroxyproline residues. Utilizes UDP-galactose solely as sugar donor. The addition of galactose onto the peptidyl hydroxyproline residues in AGP core proteins represents the first committed step in arabinogalactan polysaccharide addition. AGP glycans play essential roles in both vegetative and reproductive plant growth. {ECO:0000269|PubMed:26690932}.,FUNCTION: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue. Involved in the biosynthesis of N-glycans containing Lewis a structures (with the combination of FUT13). {ECO:0000269|PubMed:17630273}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT3G06440-MONOMER;,ARA:AT1G26810-MONOMER; 2.4.1.- 70635,72323 Hydroxyproline O-galactosyltransferase GALT3 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 16),Beta-1,3-galactosyltransferase GALT1 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 15) (Galactosyltransferase 1) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; arabinogalactan protein metabolic process [GO:0010405]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; protein O-linked glycosylation via hydroxyproline [GO:0018258]; root hair cell development [GO:0080147],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity [GO:0010488]; Lewis a epitope biosynthetic process [GO:0010493]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Expressed in juvenile leaves, stems, cauline leaves and siliques. {ECO:0000269|PubMed:17630273}.,TISSUE SPECIFICITY: Expressed in stems and siliques. {ECO:0000269|PubMed:17630273}. locus:2081071;,locus:2200660; AT3G06440,AT1G26810 Beta-13-galactosyltransferase Os06g0229200 protein (Putative beta-1,3-galactosyltransferase),Os01g0328900 protein (Putative UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase-I) (cDNA clone:J033028K02, full insert sequence) Q67X53,Q5ZDR9 Q67X53_ORYSJ,Q5ZDR9_ORYSJ Os06g0229200 OsJ_27187 OSNPB_060229200 P0525F01.16,Os01g0328900 OSNPB_010328900 P0554D10.7 ENOG411DTIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Os05g0495100 protein (cDNA clone:002-137-A12, full insert sequence) Q65X74 Q65X74_ORYSJ Os05g0495100 OJ1579_G03.8 OsJ_17244 OSNPB_050495100 ENOG411DTIG SVP Q9FVC1 SVP_ARATH MADS-box protein SVP (Protein SHORT VEGETATIVE PHASE) Frequently (70% of double mutant flowers) sepals were fused and they showed carpelloid features including stigmatic papillae and multiple ovules developed along the margin of each organ.,The double mutant has the same flowering time as the svp single mutant.,Under standard growing conditions (22°C) only the first three flowers of the double mutant were affected. These flowers had a reduced number of organs. In particular this reduction concerned the second and third floral whorls that produced three petals and five stamens whereas wild-type Arabidopsis thaliana flowers have four petals and six stamens. Furthermore some flowers showed homeotic conversion of sepals into petaloid organs.,When double mutant plants were grown at a higher temperature (>30°C) almost all flowers (90%) were severely affected in contrast with wild-type and single mutant plants that showed no floral phenotype. The double mutant flowers exhibited variable floral defects and all produced a reduced number of organs.,The triple mutant displayed proliferating inflorescence meristems in positions that would normally be occupied by flowers. This phenotype is very similar to the ap1-1 cal-1 double mutant phenotype. However the mutant formed a few flower meristems that produced stamens and carpels. The triple mutant also showed increased levels of the FUL mRNA in the inflorescences when compared with wild-type (five-fold) and the ap1-1 cal double mutant (two-fold).,Unlike the agl24-2 svp-41 double mutant where severe phenotypes similar to the lug mutant were only observed when plants were grown at 30°C in the ap1-12 agl24-2 svp-41 triple mutant severe lug-type phenotypes were observed under normal growing conditions (22°C).,Early flowering especially at 16 degrees C. Almost identical flowering times at 23 degrees C and 16 degrees C suggesting in insensitivity to changes in ambient growth temperature.,Recessive mutants have early flowering phenotype. In long days (16 hours) flowers after about 10 leaves as compared to Col siblings which flower after 15 leaves. Truncates vegetative phase. Makes trichomes early. Early flowering-P. Huijser-2000 FUNCTION: Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. 26896 MADS-box protein SVP (Protein SHORT VEGETATIVE PHASE) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; translation repressor activity, nucleic acid binding [GO:0000900]; cell differentiation [GO:0030154]; floral whorl development [GO:0048438]; negative regulation of flower development [GO:0009910]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; response to temperature stimulus [GO:0009266]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During vegetative phase expressed in young leaves and apical meristem until early stage of bolting. Early in development of the inflorescence present in the coflorescence and flower primordia but not in the main apical meristem. Present throughout the floral meristem during early stages of flower development. Later disappears prior to emergence of sepal primordia. {ECO:0000269|PubMed:19656343}. TISSUE SPECIFICITY: Detected in roots and leaves. Expressed at very low levels in flowers and siliques. Present in floral meristems. {ECO:0000269|PubMed:19656343}. locus:2041233; AT2G22540 MADS-box protein MADS-box transcription factor 22 (OsMADS22) Q9XJ66 MAD22_ORYSJ MADS22 RMD1 Os02g0761000 LOC_Os02g52340 OJ1175_B01.24 OsJ_08471 FUNCTION: Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. ENOG411DTIE SR Q2PGG3 SRR_ARATH Serine racemase (AtSR) (EC 4.3.1.17) (EC 4.3.1.18) (EC 5.1.1.18) (D-serine ammonia-lyase) (D-serine dehydratase) (L-serine ammonia-lyase) (L-serine dehydratase) DISRUPTION PHENOTYPE: Deformations and branching of pollen tubes grown in pistils. {ECO:0000269|PubMed:21415319}. FUNCTION: Catalyzes the synthesis of D-serine from L-serine. Has dehydratase activity towards both L-serine and D-serine. Displays high substrate specificity for L-serine, whereas L-alanine, L-arginine, and L-glutamine were poor substrates. {ECO:0000269|PubMed:16483618}. ARA:AT4G11640-MONOMER;MetaCyc:MONOMER-14684; 5.1.1.18; 4.3.1.17; 4.3.1.18; 5.1.1.18 35068 Serine racemase (AtSR) (EC 4.3.1.17) (EC 4.3.1.18) (EC 5.1.1.18) (D-serine ammonia-lyase) (D-serine dehydratase) (L-serine ammonia-lyase) (L-serine dehydratase) ATP binding [GO:0005524]; D-serine ammonia-lyase activity [GO:0008721]; L-serine ammonia-lyase activity [GO:0003941]; metal ion binding [GO:0046872]; protein self-association [GO:0043621]; pyridoxal phosphate binding [GO:0030170]; serine racemase activity [GO:0030378]; D-serine metabolic process [GO:0070178]; L-serine metabolic process [GO:0006563]; serine family amino acid metabolic process [GO:0009069] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:16483618}. locus:2139767; AT4G11640 serine racemase Serine racemase (EC 4.3.1.17) (EC 4.3.1.18) (EC 5.1.1.18) (D-serine ammonia-lyase) (D-serine dehydratase) (L-serine ammonia-lyase) (L-serine dehydratase) Q7XSN8 SRR_ORYSJ SERR Os04g0555900 LOC_Os04g46930 OsJ_15733 OSJNBb0012E24.7 FUNCTION: Catalyzes the synthesis of D-serine from L-serine. Has dehydratase activity towards both L-serine and D-serine. {ECO:0000269|PubMed:19249065}. ENOG411DTID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: KAT8 regulatory NSL complex subunit 3 NA NA NA NA NA NA NA ENOG411DTIR PUB5 O23225 PUB5_ARATH U-box domain-containing protein 5 (EC 2.3.2.27) (Plant U-box protein 5) (RING-type E3 ubiquitin transferase PUB5) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 79919 U-box domain-containing protein 5 (EC 2.3.2.27) (Plant U-box protein 5) (RING-type E3 ubiquitin transferase PUB5) ubiquitin-protein transferase activity [GO:0004842] locus:2115365; AT4G36550 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q6Z2G6 Q6Z2G6_ORYSJ Os02g0705600 OSNPB_020705600 P0680A05.13 ENOG411DTIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os07g0695900 protein Q6Z3X4 Q6Z3X4_ORYSJ Os07g0695900 Os07g0695900 OSNPB_070695900 P0627E10.29 ENOG411DTIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bidirectional sugar transporter Os01g0314600 protein (Fragment) A0A0P0V1P7 A0A0P0V1P7_ORYSJ Os01g0314600 OSNPB_010314600 ENOG411DTIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os01g0902700 protein (Putative peptide transport protein),Os01g0902800 protein Q8RZ75,A0A0P0VBU6 Q8RZ75_ORYSJ,A0A0P0VBU6_ORYSJ B1065G12.20 Os01g0902700 OSNPB_010902700 P0551C06.26,Os01g0902800 OSNPB_010902800 ENOG411DTIU KDSA1,KDSA2,ATKDSA2 Q9AV97,Q6NQL4,F4I2W6 KDSA1_ARATH,KDSA2_ARATH,F4I2W6_ARATH 2-dehydro-3-deoxyphosphooctonate aldolase 1 (EC 2.5.1.55) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthase) (KDO-8-phosphate synthase 1) (AtkdsA1) (KDO 8-P synthase) (KDOPS) (Phospho-2-dehydro-3-deoxyoctonate aldolase),2-dehydro-3-deoxyphosphooctonate aldolase 2 (EC 2.5.1.55) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthase) (KDO-8-phosphate synthase 2) (AtkdsA2) (KDO 8-P synthase) (KDOPS) (Phospho-2-dehydro-3-deoxyoctonate aldolase),Aldolase superfamily protein FUNCTION: Catalyzes the stereospecific condensation of D-arabinose 5-phosphate and phosphoenolpyruvate to form 3-deoxy-D-manno-octulosonate 8-phosphate (KDO-8-phosphate) and inorganic phosphate. Involved in the biosynthesis of 3-deoxy-D-manno-octulosonate (KDO) which is an indispensable component of rhamnogalacturonan II (RG-II), a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues and pollen tube growth and elongation. {ECO:0000269|PubMed:12754267, ECO:0000269|PubMed:15070398, ECO:0000269|PubMed:18503041}.,FUNCTION: Catalyzes the stereospecific condensation of D-arabinose 5-phosphate and phosphoenolpyruvate to form 3-deoxy-D-manno-octulosonate 8-phosphate (KDO-8-phosphate) and inorganic phosphate. Involved in the biosynthesis of 3-deoxy-D-manno-octulosonate (KDO) which is an indispensable component of rhamnogalacturonan II (RG-II), a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues and pollen tube growth and elongation. {ECO:0000269|PubMed:18503041}. ARA:AT1G79500-MONOMER;MetaCyc:AT1G79500-MONOMER;,ARA:AT1G16340-MONOMER; 2.5.1.55; 2.5.1.55 31657,31676,31938 2-dehydro-3-deoxyphosphooctonate aldolase 1 (EC 2.5.1.55) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthase) (KDO-8-phosphate synthase 1) (AtkdsA1) (KDO 8-P synthase) (KDOPS) (Phospho-2-dehydro-3-deoxyoctonate aldolase),2-dehydro-3-deoxyphosphooctonate aldolase 2 (EC 2.5.1.55) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthase) (KDO-8-phosphate synthase 2) (AtkdsA2) (KDO 8-P synthase) (KDOPS) (Phospho-2-dehydro-3-deoxyoctonate aldolase),Aldolase superfamily protein cytoplasm [GO:0005737]; 3-deoxy-8-phosphooctulonate synthase activity [GO:0008676]; monosaccharide biosynthetic process [GO:0046364]; pollen tube development [GO:0048868]; pollen tube growth [GO:0009860]; rhamnogalacturonan II biosynthetic process [GO:0010306],cytoplasm [GO:0005737]; 3-deoxy-8-phosphooctulonate synthase activity [GO:0008676]; rhamnogalacturonan II biosynthetic process [GO:0010306] TISSUE SPECIFICITY: Expressed in shoots. {ECO:0000269|PubMed:12754267}.,TISSUE SPECIFICITY: Expressed in roots, apical meristem, emerging leaves, hydathodes of young leaves, styles of mature flowers and funicules of mature siliques. {ECO:0000269|PubMed:18503041}. locus:2032885; AT1G79500,AT1G16340 2-dehydro-3-deoxyphosphooctonate 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed (Os12g0210800 protein) (Fragment) Q0IPE5 Q0IPE5_ORYSJ Os12g0210800 LOC_Os12g10784 Os12g0210800 OSNPB_120210800 ENOG411DTIT Q6NKQ5,A0A1P8AZ30 Q6NKQ5_ARATH,A0A1P8AZ30_ARATH At2g01275 (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein 29411,32532 At2g01275 (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:504956090; AT2G01275 Protein of unknown function (DUF3675) Os01g0121200 protein Q0JR40 Q0JR40_ORYSJ Os01g0121200 Os01g0121200 OsJ_00178 OSNPB_010121200 ENOG411DTI3 CBP20 Q9XFD1 NCBP2_ARATH Nuclear cap-binding protein subunit 2 (20 kDa nuclear cap-binding protein) (NCBP 20 kDa subunit) (AtCBP20) DISRUPTION PHENOTYPE: Hypersensitivity to abscisic acid during germination, significant reduction of stomatal conductance and greatly enhanced tolerance to drought. Plants also display mild developmental abnormalities, such as serrated rosette leaves, delayed development and slightly reduced stature. {ECO:0000269|PubMed:15604709}. FUNCTION: Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure. CBP20 also plays a role in stabilization of ABH1/CBP80 and ABH1/CBP80 localization to the nucleus. Involved in flowering regulation via its interaction with FRIGIDA. {ECO:0000269|PubMed:18550839, ECO:0000269|PubMed:18829588, ECO:0000269|PubMed:19429606}. MISCELLANEOUS: In contrast to other organisms, the CBC complex is apparently not essential for nonsense-mediated mRNA decay (NMD) in Arabidopsis. R-ATH-113418;R-ATH-674695;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-77595;R-ATH-975956;R-ATH-975957; 29609 Nuclear cap-binding protein subunit 2 (20 kDa nuclear cap-binding protein) (NCBP 20 kDa subunit) (AtCBP20) cytoplasm [GO:0005737]; mRNA cap binding complex [GO:0005845]; nuclear cap binding complex [GO:0005846]; nucleus [GO:0005634]; RNA cap binding [GO:0000339]; mRNA cis splicing, via spliceosome [GO:0045292]; mRNA splicing, via spliceosome [GO:0000398]; primary miRNA processing [GO:0031053]; RNA metabolic process [GO:0016070]; RNA splicing, via endonucleolytic cleavage and ligation [GO:0000394] TISSUE SPECIFICITY: Expressed in all tissues analyzed, including roots, stems, leaves and flowers. {ECO:0000269|PubMed:11867224, ECO:0000269|PubMed:12427994}. locus:2167649; AT5G44200 Nuclear cap-binding protein subunit Nuclear cap-binding protein subunit 2 (20 kDa nuclear cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Q84L14 NCBP2_ORYSJ CBP20 Os02g0612300 LOC_Os02g39890 OJ1004_A05.24 FUNCTION: Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure. CBP20 also plays a role in stabilization of ABH1/CBP80 and ABH1/CBP80 localization to the nucleus (By similarity). {ECO:0000250}. ENOG411DTI1 MDAR1,MDAR3,MDAR5,MDAR2,MDAR6,MDHAR Q9LFA3,Q9SR59,P92947,Q93WJ8,F4J849,F4I576,F4I577,B3H5M0 MDAR1_ARATH,MDAR3_ARATH,MDAR_ARATH,MDAR2_ARATH,F4J849_ARATH,F4I576_ARATH,F4I577_ARATH,B3H5M0_ARATH Monodehydroascorbate reductase 1, peroxisomal (AtMDAR1) (EC 1.6.5.4),Monodehydroascorbate reductase 3 (AtMDAR3) (EC 1.6.5.4),Monodehydroascorbate reductase, chloroplastic/mitochondrial (Monodehydroascorbate reductase 5, mitochondrial) (AtMDAR5) (EC 1.6.5.4) (Monodehydroascorbate reductase 6, chloroplastic) (AtMDAR6) (EC 1.6.5.4),Monodehydroascorbate reductase 2 (AtMDAR2) (EC 1.6.5.4),Monodehydroascorbate reductase 1,Monodehydroascorbate reductase 6,Monodehydroascorbate reductase DISRUPTION PHENOTYPE: Loss of growth and seed production promotion by Piriformospora indica. {ECO:0000269|PubMed:19386380}.,DISRUPTION PHENOTYPE: No visible phenotype, but enhanced 2,4,6-trinitrotoluene (TNT) tolerance. {ECO:0000269|PubMed:26339024}. FUNCTION: Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. {ECO:0000269|PubMed:16146528}.,FUNCTION: Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process (PubMed:16146528). Required for producing sufficient ascorbate to maintain the interaction between Piriformospora indica and Arabidopsis in a mutualistic state (PubMed:19386380). {ECO:0000269|PubMed:16146528, ECO:0000269|PubMed:19386380}.,FUNCTION: Catalyzes the conversion of monodehydroascorbate (MDA) to ascorbate, oxidizing NADH in the process. Can also use 2,4,6-trinitrotoluene (TNT) and 1-chloro-2,4-dinitrobenzene (CDNB) as substrates, but not 1-chloro-4-nitrobenzene (CNB). {ECO:0000269|PubMed:16146528}. MISCELLANEOUS: The use of alternative transcription starts causes dual targeting of the same mature MDAR protein to both mitochondria and chloroplast. {ECO:0000269|PubMed:12154132}. ARA:AT3G52880-MONOMER;,ARA:AT1G63940-MONOMER;,ARA:AT5G03630-MONOMER; 1.6.5.4; 1.6.5.4 46487,48363,53302,47480,50160,52115,45023,47594 Monodehydroascorbate reductase 1, peroxisomal (AtMDAR1) (EC 1.6.5.4),Monodehydroascorbate reductase 3 (AtMDAR3) (EC 1.6.5.4),Monodehydroascorbate reductase, chloroplastic/mitochondrial (Monodehydroascorbate reductase 5, mitochondrial) (AtMDAR5) (EC 1.6.5.4) (Monodehydroascorbate reductase 6, chloroplastic) (AtMDAR6) (EC 1.6.5.4),Monodehydroascorbate reductase 2 (AtMDAR2) (EC 1.6.5.4),Monodehydroascorbate reductase 1,Monodehydroascorbate reductase 6,Monodehydroascorbate reductase peroxisomal matrix [GO:0005782]; flavin adenine dinucleotide binding [GO:0050660]; monodehydroascorbate reductase (NADH) activity [GO:0016656],cytosol [GO:0005829]; flavin adenine dinucleotide binding [GO:0050660]; monodehydroascorbate reductase (NADH) activity [GO:0016656]; regulation of symbiosis, encompassing mutualism through parasitism [GO:0043903]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651]; response to symbiotic fungus [GO:0009610]; response to water deprivation [GO:0009414],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; stromule [GO:0010319]; ATP binding [GO:0005524]; flavin adenine dinucleotide binding [GO:0050660]; monodehydroascorbate reductase (NADH) activity [GO:0016656]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409],chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; flavin adenine dinucleotide binding [GO:0050660]; monodehydroascorbate reductase (NADH) activity [GO:0016656]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043],apoplast [GO:0048046]; chloroplast [GO:0009507]; peroxisomal matrix [GO:0005782]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; flavin adenine dinucleotide binding [GO:0050660]; monodehydroascorbate reductase (NADH) activity [GO:0016656]; hydrogen peroxide catabolic process [GO:0042744]; response to cadmium ion [GO:0046686],flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:2100143;,locus:2195503;,locus:2144588;,locus:2085176; AT3G52880,AT3G09940,AT1G63940,AT5G03630 Monodehydroascorbate reductase Monodehydroascorbate reductase 3, cytosolic (OsMDAR3) (OsMDHAR3) (EC 1.6.5.4),Monodehydroascorbate reductase 4, cytosolic (OsMADR4) (OsMDHAR4) (EC 1.6.5.4),Monodehydroascorbate reductase 5, chlorplastic (OsMADR5) (OsMDHAR5) (EC 1.6.5.4),Os08g0557600 protein (Fragment) Q652L6,Q6ZJ08,Q84PW3,A0A0P0XI83 MDAR3_ORYSJ,MDAR4_ORYSJ,MDAR5_ORYSJ,A0A0P0XI83_ORYSJ MDAR3 MDHAR3 Os09g0567300 LOC_Os09g39380 OJ1155_H10.27,MDAR4 MDHAR4 Os08g0557600 LOC_Os08g44340 OJ1150_A11.25,MDAR5 MDHAR5 Os08g0151800 LOC_Os08g05570 OJ1349_D05.106 P0443G08.138,Os08g0557600 OSNPB_080557600 FUNCTION: Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Ascorbate is a major antioxidant against reactive oxygen species (ROS) and nitric oxide (NO) (PubMed:24376554, PubMed:27652777). Can use NADPH as electron donor, but possesses lower activity compared to NADH as electron donor (PubMed:27652777). {ECO:0000269|PubMed:24376554, ECO:0000269|PubMed:27652777}.,FUNCTION: Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Ascorbate is a major antioxidant against reactive oxygen species (ROS) and nitric oxide (NO). {ECO:0000250|UniProtKB:Q652L6}. ENOG411DTI0 T11I11.120 Q9SW47,A0A1P8B760 Q9SW47_ARATH,A0A1P8B760_ARATH Amidase family protein (Amidase-like protein),Amidase family protein 50500,54917 Amidase family protein (Amidase-like protein),Amidase family protein locus:2116890; AT4G34880 amidase C869.01-like Os11g0123033 protein (Fragment),Os04g0183300 protein (cDNA clone:J013153N14, full insert sequence),Os04g0184100 protein (cDNA clone:J033110A17, full insert sequence),Os04g0184500 protein,Os01g0115200 protein,Os04g0185000 protein,Os04g0182900 protein,Os06g0271300 protein,Os04g0183500 protein,Os04g0184801 protein,Os04g0182875 protein C7J8I2,A3ARH1,B7ETP8,A0A0P0W7K4,A0A0P0UXE0,A0A0N7KIM0,A0A0P0W728,A0A0P0WV09,A0A0P0W7B4,A0A0P0W7P5,A0A0P0W7H3 C7J8I2_ORYSJ,A3ARH1_ORYSJ,B7ETP8_ORYSJ,A0A0P0W7K4_ORYSJ,A0A0P0UXE0_ORYSJ,A0A0N7KIM0_ORYSJ,A0A0P0W728_ORYSJ,A0A0P0WV09_ORYSJ,A0A0P0W7B4_ORYSJ,A0A0P0W7P5_ORYSJ,A0A0P0W7H3_ORYSJ Os11g0123033 OSNPB_110123033,Os04g0183300 OsJ_13963 OSNPB_040183300,Os04g0184100 OSNPB_040184100,Os04g0184500 OSNPB_040184500,Os01g0115200 OSNPB_010115200,Os04g0185000 OSNPB_040185000,Os04g0182900 OSNPB_040182900,Os06g0271300 OSNPB_060271300,Os04g0183500 OSNPB_040183500,Os04g0184801 OSNPB_040184801,Os04g0182875 OSNPB_040182875 ENOG411DTI7 APY3,APY5,APY4,APY6 Q9XI62,Q6NQA8,Q8H1D8,O80612,F4HUH6 APY3_ARATH,APY5_ARATH,APY4_ARATH,APY6_ARATH,F4HUH6_ARATH Probable apyrase 3 (AtAPY3) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 3),Probable apyrase 5 (AtAPY5) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 5),Probable apyrase 4 (AtAPY4) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 4),Probable apyrase 6 (AtAPY6) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 6),GDA1/CD39 nucleoside phosphatase family protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|Ref.1}.,DISRUPTION PHENOTYPE: No visible phenotype. Apy6 and dapy7 double mutant exhibits late anther dehiscence and low male fertility. Pollen grains of double mutant are largely deformed in shape and in most cases, the cell walls of the pollen grains are interconnected. {ECO:0000269|Ref.1}. FUNCTION: Catalyzes the hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates. {ECO:0000250}.,FUNCTION: Catalyzes the hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates (By similarity). Involved in the regulation of pollen and anther development. {ECO:0000250, ECO:0000269|Ref.1}. ARA:AT1G14240-MONOMER;,ARA:AT1G14250-MONOMER;,ARA:AT1G14230-MONOMER;,ARA:AT2G02970-MONOMER; R-ATH-8850843; 3.6.1.5 53426,53505,55198,61288,53037 Probable apyrase 3 (AtAPY3) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 3),Probable apyrase 5 (AtAPY5) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 5),Probable apyrase 4 (AtAPY4) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 4),Probable apyrase 6 (AtAPY6) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 6),GDA1/CD39 nucleoside phosphatase family protein integral component of membrane [GO:0016021]; 8-oxo-dGTP phosphohydrolase activity [GO:0102490]; ATP binding [GO:0005524],integral component of membrane [GO:0016021]; vacuole [GO:0005773]; 8-oxo-dGTP phosphohydrolase activity [GO:0102490]; ATP binding [GO:0005524],cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; 8-oxo-dGTP phosphohydrolase activity [GO:0102490]; ATP binding [GO:0005524]; anther dehiscence [GO:0009901]; pollen exine formation [GO:0010584],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in the initiation zone of lateral root and in the lateral root tip, the adaxial junction of lateral shoots with the stems, and in the abscission zone of flower organs. Not expressed in the rosette leaves. {ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Highly expressed in young rosette leaves but only weakly in roots. {ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Expressed both in the primary root and lateral root but not in the rosette leaves. {ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Detected in mature pollen grains (at the protein level). Also expressed in the veins and hydathode regions of rosette leaves. {ECO:0000269|Ref.1}. locus:2035786;,locus:2035802;,locus:2035781;,locus:2056725; AT1G14240,AT1G14250,AT1G14230,AT2G02970 GDA1 CD39 family protein Os08g0436100 protein (Putative ectonucleoside triphosphate diphosphohydrolase) (cDNA clone:J013001J16, full insert sequence),Os08g0326000 protein,GDA1/CD39 family protein, expressed (Os03g0378000 protein) (cDNA clone:J013098F17, full insert sequence) Q6Z543,Q7F1F6,Q10KM6 Q6Z543_ORYSJ,Q7F1F6_ORYSJ,Q10KM6_ORYSJ Os08g0436100 Os08g0436100 OSJNBa0016C11.3 OSNPB_080436100,OJ1136_A10.103 Os08g0326000 OsJ_26888 OSNPB_080326000 P0703C03.38,Os03g0378000 LOC_Os03g26080 Os03g0378000 OSNPB_030378000 ENOG411DTI6 TULP2 Q8GVE5 TLP2_ARATH Tubby-like F-box protein 2 (AtTLP2) 43878 Tubby-like F-box protein 2 (AtTLP2) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plastid [GO:0009536]; phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15064372}. locus:2062121; AT2G18280 tubby-like F-box protein Tubby-like F-box protein 5 (OsTLP5) (Tubby-like F-box protein 8) (OsTLP8),Os02g0705300 protein,Tubby-like F-box protein (Fragment) Q6Z2G9,A0A0N7KFY5,A0A0P0VNI8,A0A0P0VNI1 TLP5_ORYSJ,A0A0N7KFY5_ORYSJ,A0A0P0VNI8_ORYSJ,A0A0P0VNI1_ORYSJ TULP5 TULP8 Os02g0705300 LOC_Os02g47640 OsJ_007813 P0680A05.6-1,Os02g0705300 OSNPB_020705300 ENOG411DTI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transport protein Cation transporter HKT4 (OsHKT4),Os04g0607500 protein,Os04g0607583 protein Q7XPF8,A0A0P0WEG8,A0A0P0WEW9 HKT4_ORYSJ,A0A0P0WEG8_ORYSJ,A0A0P0WEW9_ORYSJ HKT4 Os04g0607500 LOC_Os04g51820 OSJNBa0060N03.3,Os04g0607500 OSNPB_040607500,Os04g0607583 OSNPB_040607583 FUNCTION: May be involved in regulation of K(+)/Na(+) homeostasis. Seems to act as a low-affinity sodium transporter. {ECO:0000269|PubMed:12795699}. ENOG411DTI4 EGY3 Q9LMU1 EGY3_ARATH Probable zinc metallopeptidase EGY3, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 3) (AtEGY3) FUNCTION: Probable membrane-associated metalloprotease that may be involved in chloroplast development. {ECO:0000250}. 3.4.24.- 62718 Probable zinc metallopeptidase EGY3, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 3) (AtEGY3) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; metallopeptidase activity [GO:0008237]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542] locus:2030938; AT1G17870 Inherit from COG: Membrane-associated zinc metalloprotease Probable zinc metalloprotease EGY3, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 3) (OsEGY3) Q851F9 EGY3_ORYSJ EGY3 Os03g0729000 LOC_Os03g51920 OsJ_12438 OSJNBb0011H13.3 FUNCTION: Probable membrane-associated metalloprotease that may be involved in chloroplast development. {ECO:0000250}. ENOG411E2U4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os06g0504900 protein (WRKY transcription factor-like) Q654W7 Q654W7_ORYSJ Os06g0504900 OJ1288_C01.23 OsJ_21480 OSNPB_060504900 ENOG411EDJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EDCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Expressed protein (Os11g0649300 protein) Q2R0D5 Q2R0D5_ORYSJ Os11g0649300 LOC_Os11g42930 OsJ_01635 OSNPB_110649300 ENOG411EDCS Q1G2Z9,Q058K9,Q1G300,A0A1I9LQS1 Q1G2Z9_ARATH,Q058K9_ARATH,Q1G300_ARATH,A0A1I9LQS1_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein,AT3G21310.1 (At3g21310) (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) 43642,44277,46857,30468 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein,AT3G21310.1 (At3g21310) (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375],integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2094781;,locus:2017592; AT1G51770,AT3G21310 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411EDCX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EMBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411EMBB SDG40 Q6NQJ8,A0A1P8BA78 SDG40_ARATH,A0A1P8BA78_ARATH Protein SET DOMAIN GROUP 40 (EC 2.1.1.-),SET domain group 40 2.1.1.- 55873,48117 Protein SET DOMAIN GROUP 40 (EC 2.1.1.-),SET domain group 40 protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026] locus:2167235; AT5G17240 Set domain NA NA NA NA NA NA NA ENOG411EDCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E05B BHLH138,BHLH10,BHLH89,BHLH91 F4IQQ9,Q84TK1,Q9LND0,Q8GX46 BH138_ARATH,BH010_ARATH,BH089_ARATH,BH091_ARATH Transcription factor bHLH138 (Basic helix-loop-helix protein 138) (AtbHLH138) (bHLH 138) (bHLH transcription factor bHLH138),Transcription factor bHLH10 (Basic helix-loop-helix protein 10) (AtbHLH10) (bHLH 10) (Transcription factor EN 23) (bHLH transcription factor bHLH010),Transcription factor bHLH89 (Basic helix-loop-helix protein 89) (AtbHLH89) (bHLH 89) (Transcription factor EN 24) (bHLH transcription factor bHLH089),Transcription factor bHLH91 (Basic helix-loop-helix protein 91) (AtbHLH91) (bHLH 91) (Transcription factor EN 25) (bHLH transcription factor bHLH091) 15223,51459,47033,48512 Transcription factor bHLH138 (Basic helix-loop-helix protein 138) (AtbHLH138) (bHLH 138) (bHLH transcription factor bHLH138),Transcription factor bHLH10 (Basic helix-loop-helix protein 10) (AtbHLH10) (bHLH 10) (Transcription factor EN 23) (bHLH transcription factor bHLH010),Transcription factor bHLH89 (Basic helix-loop-helix protein 89) (AtbHLH89) (bHLH 89) (Transcription factor EN 24) (bHLH transcription factor bHLH089),Transcription factor bHLH91 (Basic helix-loop-helix protein 91) (AtbHLH91) (bHLH 91) (Transcription factor EN 25) (bHLH transcription factor bHLH091) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther wall tapetum development [GO:0048658]; callose deposition in cell wall [GO:0052543]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}. locus:504956068;,locus:2042486;,locus:2038510;,locus:2042556; AT2G31215,AT2G31220,AT1G06170,AT2G31210 basic helix-loop-helix (bHLH) family protein Transcription factor EAT1 (Basic helix-loop-helix protein 141) (OsbHLH141) (Protein DELAYED TAPETUM DEGENERATION) (Protein ETERNAL TAPETUM 1) Q7X8R0 EAT1_ORYSJ EAT1 BHLH141 DTD Os04g0599300 LOC_Os04g51070 OsJ_16023 OSJNBa0083N12.3 OSJNba0093F12.24 DISRUPTION PHENOTYPE: Male sterility due to failure of tapetum programmed cell death (PCD) and degeneration required for pollen maturation (PubMed:23519457). Male sterility due to delayed tapetal PCD and aborted pollen development (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. FUNCTION: Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. ENOG411E05C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-activating enzyme e1 C-terminal domain Os07g0692900 protein (Fragment) A0A0P0XAH7 A0A0P0XAH7_ORYSJ Os07g0692900 OSNPB_070692900 ENOG411E05X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os01g0336701 protein,Os01g0335550 protein,Os01g0335600 protein (Fragment),Os01g0333600 protein,Os01g0336300 protein (Fragment) Q5Z8E5,Q5ZCP7,A0A0P0V2I1,A0A0P0V1X4,A0A0P0V263 Q5Z8E5_ORYSJ,Q5ZCP7_ORYSJ,A0A0P0V2I1_ORYSJ,A0A0P0V1X4_ORYSJ,A0A0P0V263_ORYSJ Os01g0336701 B1158F07.46 OSNPB_010336701 P0487E11.11,B1158F07.33 Os01g0335550 OSNPB_010335550,Os01g0335600 OSNPB_010335600,Os01g0333600 OSNPB_010333600,Os01g0336300 OSNPB_010336300 ENOG411E05T CYP21-2 Q8L8W5 CP21B_ARATH Peptidyl-prolyl cis-trans isomerase CYP21-2 (PPIase CYP21-2) (EC 5.2.1.8) (Cyclophilin of 21 kDa 2) (Cyclophilin-21-2) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 24506 Peptidyl-prolyl cis-trans isomerase CYP21-2 (PPIase CYP21-2) (EC 5.2.1.8) (Cyclophilin of 21 kDa 2) (Cyclophilin-21-2) endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Expressed in leaves, flowers, roots and stems. {ECO:0000269|PubMed:15051864}. locus:2081993; AT3G55920 PPIases accelerate the folding of proteins (By similarity) NA NA NA NA NA NA NA ENOG411EF44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EF46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain of PTEN tumour-suppressor protein NA NA NA NA NA NA NA ENOG411EMB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YT521-B-like domain NA NA NA NA NA NA NA ENOG411E058 EDS1B,EDS1 Q9SU71,Q9SU72 EDSBC_ARATH,EDS1C_ARATH Protein EDS1B (Enhanced disease susceptibility 1 protein B),Protein EDS1 (Enhanced disease susceptibility 1) DISRUPTION PHENOTYPE: No effect on RPS4-mediated resistance against avrRps4 bacteria, due to the redundancy with EDS1. {ECO:0000269|PubMed:22072959}.,DISRUPTION PHENOTYPE: No effect on RPS4-mediated resistance against avrRps4 bacteria, due to the redundancy with EDS1B. {ECO:0000269|PubMed:22072959}. The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance. Susceptible to fungal infection-J. Parker-1999 FUNCTION: Acts as a second functional copy of EDS1. Can mediate HRT-mediated resistance to turnip crinkle virus. {ECO:0000269|PubMed:22072959, ECO:0000305|PubMed:15031411}.,FUNCTION: Positive regulator of basal resistance and of effector-triggered immunity specifically mediated by TIR-NB-LRR (TNL) resistance proteins. Disruption by bacterial effector of EDS1-TIR-NB-LRR resistance protein interactions constitutes the first step in resistance activation (PubMed:22158819). Acts redundantly with salicylic acid to regulate resistance gene-mediated signaling (PubMed:19578402). Triggers early plant defenses and hypersensitive response independently of PAD4, and then recruits PAD4 to potentiate plant defenses through the accumulation of salicylic acid (PubMed:11574472). Nuclear localization is essential for basal and TNL-conditioned immunity and for reprogramming defense gene expression, while cytoplasmic EDS1 is required to induce a complete immune response (PubMed:20617163). Heterodimerization with PAD4 and/or SGA101 is necessary for TNL-mediated effector-triggered immunity (PubMed:24331460). Contributes to nonhost resistance against E.amylovora (PubMed:22316300). Loss of EDS1-PAD4 interaction compromises basal but not TNL-triggered resistance (PubMed:21434927). Necessary for systemic acquired resistance (SAR) signal generation and perception (PubMed:24755512). Has no direct lipase activity (PubMed:16040633). Putative lipase activity is dispensable for immune functions (PubMed:24331460). {ECO:0000269|PubMed:10077677, ECO:0000269|PubMed:11574472, ECO:0000269|PubMed:19578402, ECO:0000269|PubMed:20617163, ECO:0000269|PubMed:21434927, ECO:0000269|PubMed:22158819, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:24755512, ECO:0000305|PubMed:16040633}. MISCELLANEOUS: Ecotypes cv. Landsberg erecta and cv. Di-17 express a probably non-functional truncated protein comprising of only the first 162 amino acids. This protein is not expressed in cv. Wassilewskija. {ECO:0000269|PubMed:22072959}. 71631,71690 Protein EDS1B (Enhanced disease susceptibility 1 protein B),Protein EDS1 (Enhanced disease susceptibility 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; defense response [GO:0006952]; lipid metabolic process [GO:0006629],cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; lipase activity [GO:0016298]; protein homodimerization activity [GO:0042803]; aerenchyma formation [GO:0010618]; lipid metabolic process [GO:0006629]; plant-type hypersensitive response [GO:0009626]; positive regulation of cell death [GO:0010942]; regulation of hydrogen peroxide metabolic process [GO:0010310]; response to hypoxia [GO:0001666]; response to singlet oxygen [GO:0000304]; systemic acquired resistance [GO:0009627] locus:2097840;,locus:2097855; AT3G48080,AT3G48090 enhanced disease susceptibility 1 Os09g0392100 protein (Putative EDS1) (cDNA clone:J023007E18, full insert sequence) Q6H415 Q6H415_ORYSJ Os09g0392100 B1175F05.21 OsJ_29238 OSNPB_090392100 ENOG411E054 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os06g0470000 protein (Os06g0470150 protein) (Putative HGA4) (cDNA, clone: J100088A21, full insert sequence) Q69XT9 Q69XT9_ORYSJ Os06g0470000 Os06g0470150 OsJ_21315 OSNPB_060470000 P0613F06.17 ENOG411E055 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dehydration-responsive element-binding protein Dehydration-responsive element-binding protein 1H (Protein DREB1H) Q0J090 DRE1H_ORYSJ DREB1H ERF133 Os09g0522100 LOC_Os09g35020 OSJNOa273B05.9 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. ENOG411E056 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein serine/threonine kinase activity Protein kinase G11A (EC 2.7.11.1) Q0DCT8 G11A_ORYSJ Os06g0291600 LOC_Os06g18830 B1026E06.38 B1066D09.24 OsJ_020170 FUNCTION: May play a role in the regulation of metabolism and signal transduction processes. ENOG411E051 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oligopeptide transporter NA NA NA NA NA NA NA ENOG411E053 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0609300 protein,Os11g0520500 protein B9EX88,A0A0P0Y2Q1 B9EX88_ORYSJ,A0A0P0Y2Q1_ORYSJ Os11g0609300 OsJ_02019 OSNPB_110609300,Os11g0520500 OSNPB_110520500 ENOG411DVJD Q9SIR5 Q9SIR5_ARATH AmmeMemoRadiSam system protein B (Expressed protein) (Uncharacterized protein At2g25280) 32644 AmmeMemoRadiSam system protein B (Expressed protein) (Uncharacterized protein At2g25280) cytoplasm [GO:0005737]; nucleus [GO:0005634]; regulation of microtubule-based process [GO:0032886] locus:2059561; AT2G25280 Memo-like protein Os08g0299000 protein (cDNA clone:006-304-G12, full insert sequence) (cDNA clone:J033055I05, full insert sequence) (cDNA clone:J033074E08, full insert sequence),Os05g0310750 protein Q69LQ9,A0A0P0WKF1 Q69LQ9_ORYSJ,A0A0P0WKF1_ORYSJ Os08g0299000 OsJ_26808 OSJNBa0063H21.109 OSNPB_080299000,Os05g0310750 OSNPB_050310750 ENOG411EH5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVJA TFIIA-L Q93VP4,O49349,A0A1P8APF4 Q93VP4_ARATH,O49349_ARATH,A0A1P8APF4_ARATH At1g07470/F22G5_13 (Putative transcription factor IIA large subunit) (TFIIA-L2) (Transcription factor IIA large subunit) (Transcription factor IIA, alpha/beta subunit),AT1G07480 protein (TFIIA-L1) (Transcription factor IIA large subunit) (Transcription factor IIA, alpha/beta subunit) (Uncharacterized protein At1g07480),Transcription factor IIA, alpha/beta subunit R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 41264,41294,42116 At1g07470/F22G5_13 (Putative transcription factor IIA large subunit) (TFIIA-L2) (Transcription factor IIA large subunit) (Transcription factor IIA, alpha/beta subunit),AT1G07480 protein (TFIIA-L1) (Transcription factor IIA large subunit) (Transcription factor IIA, alpha/beta subunit) (Uncharacterized protein At1g07480),Transcription factor IIA, alpha/beta subunit transcription factor TFIIA complex [GO:0005672]; regulation of nucleic acid-templated transcription [GO:1903506]; transcription from RNA polymerase II promoter [GO:0006366]; transcription initiation from RNA polymerase II promoter [GO:0006367],transcription factor TFIIA complex [GO:0005672]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2025027;,locus:2024977; AT1G07470,AT1G07480 Transcription factor IIA alpha/beta subunit NA NA NA NA NA NA NA ENOG411DVJC SMT3,SMT2 Q94JS4,Q39227 SMT3B_ARATH,SMT2_ARATH 24-methylenesterol C-methyltransferase 3 (24-sterol C-methyltransferase 3) (Sterol-C-methyltransferase 3) (EC 2.1.1.143),24-methylenesterol C-methyltransferase 2 (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) (EC 2.1.1.143) (Protein COTYLEDON VASCULAR PATTERN 1) Serrated petals and sepals. Fertility is 40% that of wildtype. Dwarf; Increased branching; Small leaves; Scalloped petals; Severely serrated sepal and petal margins; Reduced fertility; Late flowering; Delayed senescence; Abnormal cotyledon venation-T. Nelson-2002 FUNCTION: Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol. PATHWAY: Steroid biosynthesis; sterol biosynthesis. ARA:AT1G76090-MONOMER;MetaCyc:AT1G76090-MONOMER;,ARA:AT1G20330-MONOMER;MetaCyc:AT1G20330-MONOMER; 2.1.1.143 40124,40450 24-methylenesterol C-methyltransferase 3 (24-sterol C-methyltransferase 3) (Sterol-C-methyltransferase 3) (EC 2.1.1.143),24-methylenesterol C-methyltransferase 2 (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) (EC 2.1.1.143) (Protein COTYLEDON VASCULAR PATTERN 1) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; 24-methylenesterol C-methyltransferase activity [GO:0030797]; sterol 24-C-methyltransferase activity [GO:0003838]; sterol biosynthetic process [GO:0016126],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; 24-methylenesterol C-methyltransferase activity [GO:0030797]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; multidimensional cell growth [GO:0009825]; negative regulation of DNA endoreduplication [GO:0032876]; pattern specification process [GO:0007389]; sterol biosynthetic process [GO:0016126]; xylem and phloem pattern formation [GO:0010051] locus:2199777;,locus:2012938; AT1G76090,AT1G20330 24-methylenesterol C-methyltransferase 24-methylenesterol C-methyltransferase 2 (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) (EC 2.1.1.143) O82427 SMT2_ORYSJ Smt2-1 Os03g0136200 LOC_Os03g04340 FUNCTION: Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol. {ECO:0000250}. ENOG411EH56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DegT/DnrJ/EryC1/StrS aminotransferase family NA NA NA NA NA NA NA ENOG411EH58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity) NA NA NA NA NA NA NA ENOG411E0WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) Os01g0138500 protein (cDNA clone:J033039C22, full insert sequence) Q5ZC54 Q5ZC54_ORYSJ Os01g0138500 Os01g0138500 OsJ_00301 OSNPB_010138500 P0443D08.40 ENOG411E1KW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0606700 protein,OSJNBa0067K08.11 protein (Os04g0496700 protein),Os07g0542800 protein Q69Q43,Q7XUK1,A0A0P0X796 Q69Q43_ORYSJ,Q7XUK1_ORYSJ,A0A0P0X796_ORYSJ P0029C06.12 Os06g0606700 OSNPB_060606700,OSJNBa0067K08.11 Os04g0496700 OSNPB_040496700,Os07g0542800 OSNPB_070542800 ENOG411E1KV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411E1KU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like Embryogenesis transmembrane protein, putative (Os11g0220600 protein),Os11g0220500 protein,Os11g0682000 protein Q2R8Q6,A0A0P0Y0S8,A0A0P0Y5N4 Q2R8Q6_ORYSJ,A0A0P0Y0S8_ORYSJ,A0A0P0Y5N4_ORYSJ Os11g0220600 LOC_Os11g11360 OsJ_33391 OSNPB_110220600,Os11g0220500 OSNPB_110220500,Os11g0682000 OSNPB_110682000 ENOG411E1KT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os05g0200400 protein (Fragment),Os07g0136800 protein (Fragment) A0A0P0WJA6,A0A0P0X2K8 A0A0P0WJA6_ORYSJ,A0A0P0X2K8_ORYSJ Os05g0200400 OSNPB_050200400,Os07g0136800 OSNPB_070136800 ENOG411E1KB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar phosphate phosphate translocator NA NA NA NA NA NA NA ENOG411E1KA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: transporter NA NA NA NA NA NA NA ENOG411E1KG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0824800 protein (cDNA clone:J013055G05, full insert sequence) Q5QMB6 Q5QMB6_ORYSJ Os01g0824800 Os01g0824800 OSNPB_010824800 P0031D02.38 P0439E11.2 ENOG411E1KJ F4J5Y7 F4J5Y7_ARATH Protein kinase superfamily protein R-ATH-446652; 43951 Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2099009; AT3G58690 serine threonine-protein kinase Os05g0207700 protein (Putative serine/threonine-specific protein kinase) Q60EZ1 Q60EZ1_ORYSJ Os05g0207700 OJ1430_B02.5 OsJ_17509 OSNPB_050207700 ENOG411E1KH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os06g0305400 protein A0A0P0WVN9 A0A0P0WVN9_ORYSJ Os06g0305400 OSNPB_060305400 ENOG411E1KN Q9AST4 Q9AST4_ARATH AT4g31930/F10N7_260 (Mitochondrial glycoprotein family protein) 27176 AT4g31930/F10N7_260 (Mitochondrial glycoprotein family protein) mitochondrial matrix [GO:0005759] locus:2116597; AT4G31930 Mitochondrial glycoprotein family protein Os09g0557400 protein (cDNA clone:J013028N01, full insert sequence),Os02g0453500 protein (Fragment) Q0IZP8,A0A0N7KF85 Q0IZP8_ORYSJ,A0A0N7KF85_ORYSJ Os09g0557400 Os09g0557400 OsJ_30306 OSNPB_090557400,Os02g0453500 OSNPB_020453500 ENOG411E1KM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione S-transferase, putative, expressed (Os12g0210200 protein) (Putative glutathione S-transferase OsGSTZ1) Q9FUE1 Q9FUE1_ORYSJ Os12g0210200 LOC_Os12g10720 Os12g0210200 OSNPB_120210200 ENOG411E1K3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine-threonine protein kinase plant-type Os04g0465900 protein A0A0P0WBD3 A0A0P0WBD3_ORYSJ Os04g0465900 OSNPB_040465900 ENOG411E1K2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os04g0491350 protein A0A0P0WC91 A0A0P0WC91_ORYSJ Os04g0491350 OSNPB_040491350 ENOG411E1K4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0226000 protein (cDNA clone:001-121-B12, full insert sequence),Os06g0537800 protein,Os05g0118600 protein Q67X25,A0A0P0WXD5,A0A0P0WH76 Q67X25_ORYSJ,A0A0P0WXD5_ORYSJ,A0A0P0WH76_ORYSJ P0690H04.13-1 Os06g0226000 OSNPB_060226000,Os06g0537800 OSNPB_060537800,Os05g0118600 OSNPB_050118600 ENOG411E1K9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) Expressed protein (Os11g0672900 protein) (cDNA clone:001-119-A05, full insert sequence) Q2QZT3 Q2QZT3_ORYSJ LOC_Os11g44920 Os11g0672900 OSNPB_110672900 ENOG411E1K8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0618700 protein (cDNA clone:J013043D16, full insert sequence) Q7X770 Q7X770_ORYSJ P0552F09.132 P0560B08.105 Os07g0618700 OSNPB_070618700 ENOG411DZI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0463600 protein (Fragment) A0A0N7KJ68 A0A0N7KJ68_ORYSJ Os04g0463600 OSNPB_040463600 ENOG411E0K2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411E0K1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RINGv Os08g0384900 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:J023149O05, full insert sequence),Os01g0610700 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:J013127G21, full insert sequence) Q6YW60,Q5ZE10 Q6YW60_ORYSJ,Q5ZE10_ORYSJ Os08g0384900 Os08g0384900 B1090H08.45 OSNPB_080384900,Os01g0610700 OSNPB_010610700 P0410E03.26 ENOG411E0K6 Q9LHC4 Q9LHC4_ARATH 6,7-dimethyl-8-ribityllumazine synthase (Uncharacterized protein At3g32930) 27432 6,7-dimethyl-8-ribityllumazine synthase (Uncharacterized protein At3g32930) chloroplast envelope [GO:0009941] locus:2096643; AT3G32930 NA Os07g0608100 protein (cDNA clone:J013145L10, full insert sequence) (cDNA clone:J033108L06, full insert sequence) Q6YSF0 Q6YSF0_ORYSJ Os07g0608100 Os07g0608100 OsJ_25067 OSJNBa0072I06.33 OSNPB_070608100 ENOG411E0K4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WAX2 C-terminal domain Os02g0814200 protein (Putative CER1) (cDNA clone:J013134I09, full insert sequence),Os02g0814200 protein (Fragment) Q6K3D8,A0A0P0VRG7 Q6K3D8_ORYSJ,A0A0P0VRG7_ORYSJ Os02g0814200 OJ1293_E04.17 OsJ_08848 OSJNBa0053L11.39 OSNPB_020814200,Os02g0814200 OSNPB_020814200 ENOG411E0K5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCAMP family Secretory carrier-associated membrane protein 4 (Secretory carrier membrane protein 4) Q75IC7 SCAM4_ORYSJ SCAMP4 Os03g0582200 LOC_Os03g38590 OJ1785_A05.15 OsJ_011085 OsJ_11549 FUNCTION: Probably involved in membrane trafficking. {ECO:0000250}. ENOG411E0K8 B3H497,Q9SQT6,Q2V3X9,A0A1I9LSQ6 B3H497_ARATH,Q9SQT6_ARATH,Q2V3X9_ARATH,A0A1I9LSQ6_ARATH AT3G06330 protein (RING/U-box superfamily protein),AT3g06330/F24P17_21 (At3g06330) (F24P17.21 protein) (RING/U-box superfamily protein),RING/U-box superfamily protein 39530,46711,28829,34975 AT3G06330 protein (RING/U-box superfamily protein),AT3g06330/F24P17_21 (At3g06330) (F24P17.21 protein) (RING/U-box superfamily protein),RING/U-box superfamily protein integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270],integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270] locus:2081076; AT3G06330 zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411E0KR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein FBW2-like F-box protein-like (Os02g0757700 protein),F-box protein-like (Os06g0219700 protein) (cDNA clone:J023036O11, full insert sequence) Q6Z7V6,Q67X80 Q6Z7V6_ORYSJ,Q67X80_ORYSJ P0471A11.28-1 Os02g0757700 OsJ_08452 OSNPB_020757700,Os06g0219700 Os06g0219700 OsJ_20616 OSNPB_060219700 P0436F11.26 ENOG411E0KS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Probable aquaporin PIP2-7 (OsPIP2;7) (Plasma membrane intrinsic protein 2-7) Q651D5 PIP27_ORYSJ PIP2-7 Os09g0541000 LOC_Os09g36930 B1274F11.29-1 B1274F11.29-2 P0478E02.3 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411E0KP EMB1444,BHLH155 P0C7P8,Q58G01 LHWL1_ARATH,LHWL3_ARATH Transcription factor EMB1444 (Basic helix-loop-helix protein 169) (AtbHLH169) (bHLH 169) (LONESOME HIGHWAY-like protein 1) (Protein EMBRYO DEFECTIVE 1444) (bHLH transcription factor bHLH169),Transcription factor bHLH155 (BHLH transcription factor gamma) (bHLH gamma) (Basic helix-loop-helix protein 155) (AtbHLH155) (bHLH 155) (LONESOME HIGHWAY-like protein 3) (bHLH transcription factor bHLH155) DISRUPTION PHENOTYPE: Pale yellow-green embryos arrested at mature cotyledon steps. {ECO:0000269|PubMed:12586866}. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Transcription factor that may regulate root development. {ECO:0000250}. 81015,79809 Transcription factor EMB1444 (Basic helix-loop-helix protein 169) (AtbHLH169) (bHLH 169) (LONESOME HIGHWAY-like protein 1) (Protein EMBRYO DEFECTIVE 1444) (bHLH transcription factor bHLH169),Transcription factor bHLH155 (BHLH transcription factor gamma) (bHLH gamma) (Basic helix-loop-helix protein 155) (AtbHLH155) (bHLH 155) (LONESOME HIGHWAY-like protein 3) (bHLH transcription factor bHLH155) cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] locus:2042551; AT1G06150,AT2G31280 HLH NA NA NA NA NA NA NA ENOG411E0KW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein OSJNBa0089N06.7 protein (Os04g0628300 protein) Q7XN75 Q7XN75_ORYSJ Os04g0628300 Os04g0628300 OSJNBa0089N06.7 OSNPB_040628300 ENOG411E0KY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E0KB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0KC PUMP2 Q9ZWG1 PUMP2_ARATH Mitochondrial uncoupling protein 2 (AtPUMP2) FUNCTION: PUMPS are mitochondrial transporter proteins that create proton leaks across the inner mitochondrial membrane, thus uncoupling oxidative phosphorylation. This leads to a decrease in the efficiency of oxidative phosphorylation and an increase in heat production. May be involved in protecting plant cells against oxidative stress damage (By similarity). {ECO:0000250}. R-ATH-167826;R-ATH-167827; 33442 Mitochondrial uncoupling protein 2 (AtPUMP2) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; plasma membrane [GO:0005886]; oxidative phosphorylation uncoupler activity [GO:0017077]; mitochondrial transmembrane transport [GO:1990542]; mitochondrial transport [GO:0006839] locus:2154593; AT5G58970 uncoupling protein NA NA NA NA NA NA NA ENOG411E0KA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0170800 protein (Fragment) A0A0N7KN01 A0A0N7KN01_ORYSJ Os07g0170800 OSNPB_070170800 ENOG411E0KG Q8LAA0 Q8LAA0_ARATH At3g15080 (Exonuclease domain-containing protein) (Exonuclease, putative) (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) (Putative exonuclease) 31126 At3g15080 (Exonuclease domain-containing protein) (Exonuclease, putative) (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) (Putative exonuclease) exonuclease activity [GO:0004527]; nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2086320; AT3G15080 exonuclease Exonuclease-like protein (Os08g0377400 protein) (cDNA clone:J013031E02, full insert sequence) Q7F186 Q7F186_ORYSJ OJ1705_C03.130 Os08g0377400 OsJ_27126 OSNPB_080377400 ENOG411E0KD Q6NPG7 Y5382_ARATH Uncharacterized protein At5g43822 22719 Uncharacterized protein At5g43822 locus:5019474872; AT5G43822 Inherit from KOG: Pentatricopeptide repeat-containing protein Os10g0566900 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J033059A21, full insert sequence) Q7XC07 Q7XC07_ORYSJ OSJNBa0057L21.18 LOC_Os10g41730 Os10g0566900 OsJ_32504 OSNPB_100566900 ENOG411E0KI A0A1I9LQN9,Q7Y216,A0A1I9LQN7,F4J6R3,F4J6R2,F4J6R4 A0A1I9LQN9_ARATH,Q7Y216_ARATH,A0A1I9LQN7_ARATH,F4J6R3_ARATH,F4J6R2_ARATH,F4J6R4_ARATH Nucleotidyltransferase family protein,Nucleotidyltransferase family protein (Uncharacterized protein At3g45750) 68658,77235,68169,53413,69751,50600 Nucleotidyltransferase family protein,Nucleotidyltransferase family protein (Uncharacterized protein At3g45750) transferase activity [GO:0016740],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2102709;,locus:2102714; AT3G45750,AT3G45760 Inherit from KOG: Zinc finger CCHC domain containing Os08g0559900 protein,Os09g0570600 protein Q6YYY1,Q652N4 Q6YYY1_ORYSJ,Q652N4_ORYSJ Os08g0559900 OSNPB_080559900 P0562A06.26 P0604E01.3,Os09g0570600 OJ1003_C09.37 OSNPB_090570600 ENOG411E0KN EDA18 A0A1P8B041,F4IIX4 A0A1P8B041_ARATH,F4IIX4_ARATH RING/U-box superfamily protein Defective in pollen development. 75354,73656 RING/U-box superfamily protein embryo sac development [GO:0009553]; pollen development [GO:0009555] locus:2044752; AT2G34920 RING Os07g0499800 protein Q0D693 Q0D693_ORYSJ Os07g0499800 Os07g0499800 OSNPB_070499800 ENOG411E0KM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Expressed protein (Os03g0297000 protein) (cDNA clone:002-107-B09, full insert sequence),Os05g0346400 protein (cDNA clone:001-006-F04, full insert sequence) (cDNA clone:J033105N07, full insert sequence) Q10MS6,Q5W6R2 Q10MS6_ORYSJ,Q5W6R2_ORYSJ Os03g0297000 LOC_Os03g18560 Os03g0297000 OsJ_10494 OSNPB_030297000,Os05g0346400 Os05g0346400 B1036C05.14 B1164G01.4 OsJ_18156 OSNPB_050346400 ENOG411DZIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411DZIT MHX O22252 MHX_ARATH Magnesium/proton exchanger (Mg(2+)/H(+) exchanger) (AtMHX) (Zinc/proton exchanger) (Zn(2+)/H(+) exchanger) FUNCTION: Vacuolar transporter that exchanges protons with Mg(2+), Zn(2+) and Fe(2+) ions. May control the partitioning of Mg(2+) and Zn(2+) between plant organs. Could also transport Cd(2+) in vitro. {ECO:0000269|PubMed:10406802, ECO:0000269|PubMed:12206396, ECO:0000269|PubMed:17080942, ECO:0000269|PubMed:18327593}. R-ATH-418359;R-ATH-425561;R-ATH-5578775; 59792 Magnesium/proton exchanger (Mg(2+)/H(+) exchanger) (AtMHX) (Zinc/proton exchanger) (Zn(2+)/H(+) exchanger) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; ion transport [GO:0006811]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Mainly expressed in the vascular cylinder. {ECO:0000269|PubMed:10406802}. locus:2061951; AT2G47600 magnesium ion transport Magnesium/proton exchanger 2 (Mg(2+)/H(+) exchanger 2) (Zinc/proton exchanger 2) (Zn(2+)/H(+) exchanger 2),Magnesium/proton exchanger 1 (Mg(2+)/H(+) exchanger 1) (Zinc/proton exchanger 1) (Zn(2+)/H(+) exchanger 1),Os02g0644900 protein (Fragment) Q6H641,Q2R041,A0A0N7KFS3 MHX2_ORYSJ,MHX1_ORYSJ,A0A0N7KFS3_ORYSJ MHX2 Os02g0644900 LOC_Os02g43110 OJ1282_H11.33 P0030D07.11,MHX1 Os11g0660000 LOC_Os11g43860 OsJ_34726,Os02g0644900 OSNPB_020644900 FUNCTION: Vacuolar transporter that exchanges protons with Mg(2+), Zn(2+) and Fe(2+) ions. May control the partitioning of Mg(2+) and Zn(2+) between plant organs (By similarity). {ECO:0000250}. ENOG411DZIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DZID O82790,F4IH73,F4IH74 O82790_ARATH,F4IH73_ARATH,F4IH74_ARATH AT2G45990 protein (Expressed protein) (Ribosomal RNA small subunit methyltransferase G) (Uncharacterized protein At2g45990),Ribosomal RNA small subunit methyltransferase G 30113,29457,23411 AT2G45990 protein (Expressed protein) (Ribosomal RNA small subunit methyltransferase G) (Uncharacterized protein At2g45990),Ribosomal RNA small subunit methyltransferase G chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; methyltransferase activity [GO:0008168],methyltransferase activity [GO:0008168] locus:2050730; AT2G45990 NA Os07g0418000 protein (cDNA clone:J013047M02, full insert sequence),Os07g0418000 protein (cDNA clone:001-006-D04, full insert sequence) (cDNA clone:001-006-E03, full insert sequence) Q8LHV5,Q7F0Q5 Q8LHV5_ORYSJ,Q7F0Q5_ORYSJ P0025D09.105-1 Os07g0418000 OsJ_23973 OSNPB_070418000,P0025D09.105-2 Os07g0418000 OSNPB_070418000 ENOG411DZIF XTH33 Q8LC45 XTH33_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 33 (At-XTH33) (XTH-33) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. MISCELLANEOUS: In contrast to group 1 and group 2 endotransglucosylase/hydrolase proteins, it may not contain the ligase activity, and may catalyze endohydrolysis xyloglucan polymers only. ARA:AT1G10550-MONOMER; 2.4.1.207 34644 Probable xyloglucan endotransglucosylase/hydrolase protein 33 (At-XTH33) (XTH-33) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; integral component of plasma membrane [GO:0005887]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; plant-type cell wall modification involved in multidimensional cell growth [GO:0009831]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Predominantly expressed in green siliques. {ECO:0000269|PubMed:11673616}. locus:2194554; AT1G10550 Xyloglucan endotransglucosylase hydrolase protein NA NA NA NA NA NA NA ENOG411DX0T O81908 PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060, chloroplastic 80832 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2205609; AT1G02060 Pentatricopeptide repeat-containing protein Os02g0121900 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6ZH91 Q6ZH91_ORYSJ Os02g0121900 Os02g0121900 OJ1020_C02.24 OsJ_05173 OSNPB_020121900 ENOG411DX0U UBC13,UBC7,UBC14 Q42541,Q42540,P42747,A0A1I9LLI9,F4IWU7 UBC13_ARATH,UBC7_ARATH,UBC14_ARATH,A0A1I9LLI9_ARATH,F4IWU7_ARATH Ubiquitin-conjugating enzyme E2 13 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 13) (Ubiquitin carrier protein 13) (Ubiquitin-protein ligase 13),Ubiquitin-conjugating enzyme E2 7 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 7) (Ubiquitin carrier protein 7) (Ubiquitin-protein ligase 7),Ubiquitin-conjugating enzyme E2 14 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 14) (TAYO29) (UbcAt3) (Ubiquitin carrier protein 14) (Ubiquitin-protein ligase 14),Ubiquitin-conjugating enzyme 13,Ubiquitin-conjugating enzyme 14 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Involved in the formation of multiubiquitin chains. Signal the protein for selective degradation. {ECO:0000269|PubMed:8647807}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 18822,18722,18728,14158,22601 Ubiquitin-conjugating enzyme E2 13 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 13) (Ubiquitin carrier protein 13) (Ubiquitin-protein ligase 13),Ubiquitin-conjugating enzyme E2 7 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 7) (Ubiquitin carrier protein 7) (Ubiquitin-protein ligase 7),Ubiquitin-conjugating enzyme E2 14 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 14) (TAYO29) (UbcAt3) (Ubiquitin carrier protein 14) (Ubiquitin-protein ligase 14),Ubiquitin-conjugating enzyme 13,Ubiquitin-conjugating enzyme 14 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; protein polyubiquitination [GO:0000209],ATP binding [GO:0005524],ATP binding [GO:0005524]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511] DEVELOPMENTAL STAGE: Up-regulated during the G0 to S phase transition. {ECO:0000269|PubMed:8078482}. locus:2078231;,locus:2099936; AT3G46460,AT5G59300,AT3G55380 ubiquitin-conjugating enzyme Os01g0839700 protein (Putative ubiquitin carrier protein UBC7) (Ubiquitin carrier protein) (cDNA clone:001-039-E11, full insert sequence) (cDNA clone:006-208-B05, full insert sequence) (cDNA clone:J013135H01, full insert sequence),Os05g0460200 protein (Putative ubiquitin-conjugating enzyme E2) (cDNA clone:001-034-F08, full insert sequence) (cDNA clone:J013000O01, full insert sequence) (cDNA clone:J033021F14, full insert sequence) Q943L1,Q6L508 Q943L1_ORYSJ,Q6L508_ORYSJ Os01g0839700 Os01g0839700 OsJ_04022 OSNPB_010839700 P0031D11.34 P0408C03.9,Os05g0460200 OJ1281_H05.6 OsJ_18812 OSNPB_050460200 ENOG411DX0V BHLH62,BHLH78,CIB2,CIB3 Q9SRT2,Q9FJL4,A0A1P8B9W1,A0A1I9LTV0 BH062_ARATH,BH078_ARATH,A0A1P8B9W1_ARATH,A0A1I9LTV0_ARATH Transcription factor bHLH62 (Basic helix-loop-helix protein 62) (AtbHLH62) (bHLH 62) (Transcription factor EN 85) (bHLH transcription factor bHLH062),Transcription factor bHLH78 (Basic helix-loop-helix protein 78) (AtbHLH78) (bHLH 78) (Transcription factor EN 86) (bHLH transcription factor bHLH078),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein FUNCTION: Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}. 50247,54878,51326,48349 Transcription factor bHLH62 (Basic helix-loop-helix protein 62) (AtbHLH62) (bHLH 62) (Transcription factor EN 85) (bHLH transcription factor bHLH062),Transcription factor bHLH78 (Basic helix-loop-helix protein 78) (AtbHLH78) (bHLH 78) (Transcription factor EN 86) (bHLH transcription factor bHLH078),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2079676;,locus:2152551; AT3G07340,AT5G48560 Transcription factor BHLH transcription factor(GBOF-1)-like (Os08g0524800 protein),BHLH transcription factor (Os01g0915600 protein) (Putative bHLH transcription factor) (cDNA clone:J033022O19, full insert sequence) Q84QW1,Q5N802 Q84QW1_ORYSJ,Q5N802_ORYSJ OJ1191_A10.109 Os08g0524800 OSNPB_080524800,Os01g0915600 Os01g0915600 OSNPB_010915600 P0004D12.24 ENOG411DX0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os10g0111700 protein (POT family protein, expressed),Os10g0111700 protein (Fragment) Q33BF9,A0A0P0XRS0 Q33BF9_ORYSJ,A0A0P0XRS0_ORYSJ Os10g0111700 LOC_Os10g02260 OSNPB_100111700,Os10g0111700 OSNPB_100111700 ENOG411DX0X ATXR3 O23372 ATXR3_ARATH Histone-lysine N-methyltransferase ATXR3 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 2) (Trithorax-related protein 3) (TRX-related protein 3) DISRUPTION PHENOTYPE: Pleiotropic effects on plant growth and development, including dwarf size, aberrant root development and sterile flowers. {ECO:0000269|PubMed:20937886, ECO:0000269|PubMed:21037105}. Dwarf; Completely sterile-W. Shen-2010 FUNCTION: Histone methyltransferase specifically required for trimethylation of 'Lys-4' of histone H3 (H3K4me3) and is crucial for both sporophyte and gametophyte development (PubMed:21037105, PubMed:20937886). 2.1.1.43 267060 Histone-lysine N-methyltransferase ATXR3 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 2) (Trithorax-related protein 3) (TRX-related protein 3) nucleus [GO:0005634]; histone methyltransferase activity (H3-K4 specific) [GO:0042800]; carpel development [GO:0048440]; post-embryonic development [GO:0009791]; stamen development [GO:0048443]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:20937886}. locus:2129755; AT4G15180 Histone-lysine n-methyltransferase Os08g0180100 protein (Fragment) A0A0P0XCN3,A0A0N7KPD4 A0A0P0XCN3_ORYSJ,A0A0N7KPD4_ORYSJ Os08g0180100 OSNPB_080180100 ENOG411DX0Y Q9C578 RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein FUNCTION: Does not have cyclase activity. Plays a role in 40S-ribosomal-subunit biogenesis in the early pre-rRNA processing steps at sites A0, A1 and A2 that are required for proper maturation of the 18S RNA (By similarity). {ECO:0000250}. R-ATH-6791226; 40874 Probable RNA 3'-terminal phosphate cyclase-like protein nucleolus [GO:0005730]; endoribonuclease activity [GO:0004521]; endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000479] locus:504956443; AT5G22100 RNA 3'-terminal phosphate cyclase-like Os03g0833700 protein (Putative RNA 3'-terminal phosphate cyclase) (RNA 3'-terminal phosphate cyclase family protein, expressed) Q75LH9 Q75LH9_ORYSJ Os03g0833700 LOC_Os03g61790 Os03g0833700 OSJNBa0096I06.28 OSNPB_030833700 ENOG411DX0Z Q8GUK5,A0A178VBR3 Q8GUK5_ARATH,A0A178VBR3_ARATH At3g05625 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein 28953,21848 At3g05625 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:504955885; AT3G05625 Inherit from NOG: expressed protein Os01g0343500 protein (cDNA clone:J013094L10, full insert sequence) Q0JN04 Q0JN04_ORYSJ Os01g0343500 Os01g0343500 OSNPB_010343500 ENOG411DX0A PCMP-H36 Q9S7F4 PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 92376 Putative pentatricopeptide repeat-containing protein At2g01510 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2078653; AT3G02010 Pentatricopeptide repeat-containing protein Os01g0101150 protein Q655L5 Q655L5_ORYSJ P0672D08.16 Os01g0101150 OSNPB_010101150 ENOG411DX0C AT2G02910.1,AT4G09630.1,EMB2756 A4IJ37,Q9SST1,A0A1P8AW51,A0A1P8B3Q2,F4HV06 A4IJ37_ARATH,Q9SST1_ARATH,A0A1P8AW51_ARATH,A0A1P8B3Q2_ARATH,F4HV06_ARATH At2g02910 (Transmembrane protein (DUF616)),Transmembrane protein (DUF616) (Uncharacterized protein AT4g09630),Transmembrane protein (DUF616) Embryo defective; Transition-D. Meinke-2004 53462,81270,73509,79541,84109 At2g02910 (Transmembrane protein (DUF616)),Transmembrane protein (DUF616) (Uncharacterized protein AT4g09630),Transmembrane protein (DUF616) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; response to cadmium ion [GO:0046686] locus:2056750;,locus:2136907;,locus:2009253; AT2G02910,AT4G09630,AT1G34550 Protein of unknown function (DUF616) Expressed protein (Os11g0198100 protein) (cDNA clone:J023046C06, full insert sequence),Os02g0745800 protein (Fragment) B7EHD7,A0A0P0VPF7 B7EHD7_ORYSJ,A0A0P0VPF7_ORYSJ Os11g0198100 LOC_Os11g09170 OSNPB_110198100,Os02g0745800 OSNPB_020745800 ENOG411DX0D NAC020 Q67Z40 Q67Z40_ARATH NAC domain containing protein 20 (Uncharacterized protein At1g54330) 34769 NAC domain containing protein 20 (Uncharacterized protein At1g54330) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription, DNA-templated [GO:0006351] locus:2020123; AT1G54330 nac domain NA NA NA NA NA NA NA ENOG411DX0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os05g0298050 protein (Fragment),Os04g0130433 protein Q10L51,A0A0P0WK89,A0A0P0W6G2 Q10L51_ORYSJ,A0A0P0WK89_ORYSJ,A0A0P0W6G2_ORYSJ Os03g0358800 LOC_Os03g24430 OSNPB_030358800,Os05g0298050 OSNPB_050298050,Os04g0130433 OSNPB_040130433 ENOG411DX0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein C2H2 transcription factor (Os03g0239300 protein) (Zinc finger, C2H2 type family protein, expressed) (cDNA clone:J013047G22, full insert sequence) (cDNA clone:J023110G13, full insert sequence) Q10PC4 Q10PC4_ORYSJ Os03g0239300 LOC_Os03g13600 Os03g0239300 OSNPB_030239300 ENOG411DX0G MEFG1,MEFG2 Q9C641,F4IW10,A0A1P8AQG8 EFGM1_ARATH,EFGM2_ARATH,A0A1P8AQG8_ARATH Elongation factor G-1, mitochondrial (EF-Gmt) (mEF-G 1-1) (Elongation factor G1-1),Elongation factor G-2, mitochondrial (EF-Gmt) (mEF-G 1-2) (Elongation factor G1-2),Elongation factor G, mitochondrial (EF-Gmt) (Elongation factor G 1, mitochondrial) (mEF-G 1) (Elongation factor G1) FUNCTION: Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. {ECO:0000255|HAMAP-Rule:MF_03061}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03061}. PATHWAY: Protein biosynthesis; polypeptide chain elongation. {ECO:0000255|HAMAP-Rule:MF_03061}.,PATHWAY: Protein biosynthesis; polypeptide chain elongation. {ECO:0000256|HAMAP-Rule:MF_03061}. ARA:GQT-144-MONOMER;ARA:GQT-2747-MONOMER; 83179,83112,63151 Elongation factor G-1, mitochondrial (EF-Gmt) (mEF-G 1-1) (Elongation factor G1-1),Elongation factor G-2, mitochondrial (EF-Gmt) (mEF-G 1-2) (Elongation factor G1-2),Elongation factor G, mitochondrial (EF-Gmt) (Elongation factor G 1, mitochondrial) (mEF-G 1) (Elongation factor G1) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; mitochondrial translational elongation [GO:0070125],mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; mitochondrial translational elongation [GO:0070125]; response to cadmium ion [GO:0046686],mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; mitochondrial translational elongation [GO:0070125] TISSUE SPECIFICITY: Expressed in cotyledons and adult leaves at the same levels. {ECO:0000269|PubMed:17629920}. locus:2825721;,locus:2055611; AT1G45332,AT2G45030 elongation factor G Elongation factor G, mitochondrial (EF-Gmt) (Elongation factor G 1, mitochondrial) (mEF-G 1) (Elongation factor G1) Q9FE64 EFGM_ORYSJ Os03g0565500 LOC_Os03g36780 OSJNBa0026A15.1 FUNCTION: Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. {ECO:0000255|HAMAP-Rule:MF_03061}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03061}. ENOG411DX0I EXPA3,EXPA9,EXP3 O80932,Q9LZ99,A0A1P8B103 EXPA3_ARATH,EXPA9_ARATH,A0A1P8B103_ARATH Expansin-A3 (AtEXPA3) (Alpha-expansin-3) (At-EXP3) (AtEx3) (Ath-ExpAlpha-1.9),Expansin-A9 (AtEXPA9) (Alpha-expansin-9) (At-EXP9) (AtEx9) (Ath-ExpAlpha-1.10),Barwin-like endoglucanases superfamily protein FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 28266,27750,26214 Expansin-A3 (AtEXPA3) (Alpha-expansin-3) (At-EXP3) (AtEx3) (Ath-ExpAlpha-1.9),Expansin-A9 (AtEXPA9) (Alpha-expansin-9) (At-EXP9) (AtEx9) (Ath-ExpAlpha-1.10),Barwin-like endoglucanases superfamily protein cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664]; response to gibberellin [GO:0009739]; response to red light [GO:0010114]; syncytium formation [GO:0006949],cell wall [GO:0005618]; chloroplast [GO:0009507]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] locus:2040686;,locus:2180182; AT2G37640,AT5G02260 Pollen allergen NA NA NA NA NA NA NA ENOG411DX0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (By similarity) Os07g0444000 protein (Fragment) A0A0P0X5I8 A0A0P0X5I8_ORYSJ Os07g0444000 OSNPB_070444000 ENOG411DX0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6H7T7 Q6H7T7_ORYSJ Os02g0161800 Os02g0161800 OJ9003_G05.27 OSNPB_020161800 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DX00 AOC4 Q93ZC5 AOC4_ARATH Allene oxide cyclase 4, chloroplastic (EC 5.3.99.6) FUNCTION: Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid. MISCELLANEOUS: The four allene oxide cyclase proteins (AOC1, AOC2, AOC3 and AOC4) are encoded by duplicated genes. They are very similar, and most experiments involving antibodies do not discriminate between the different members. ARA:AT1G13280-MONOMER; 5.3.99.6; 5.3.99.6 27809 Allene oxide cyclase 4, chloroplastic (EC 5.3.99.6) chloroplast [GO:0009507]; plasma membrane [GO:0005886]; allene-oxide cyclase activity [GO:0046423]; jasmonic acid biosynthetic process [GO:0009695] TISSUE SPECIFICITY: Highly expressed in fully developed leaves. {ECO:0000269|PubMed:12777050}. locus:2205349; AT1G13280 allene oxide cyclase Allene oxide cyclase, chloroplastic (OsAOC) (EC 5.3.99.6) (Protein COLEOPTILE PHOTOMORPHOGENESIS 2) (Protein HEBIBA) Q75KD7 AOC_ORYSJ AOC AOC3 CPM2 HB LOC_Os03g32314 Os03g0438100 OsJ_11399 OSJNBa0054H04.12 OSNPB_030438100 DISRUPTION PHENOTYPE: In cpm2 and hebiba mutants, impaired jasmonic acid biosynthesis. Flower morphological abnormalities and early flowering. Slight increased susceptibility to incompatible strains of the blast fungus Magnaporthe grisea with higher hyphal growth and impaired phytoalexins (e.g. sakuranetin) production (PubMed:23347338). However, normal sensitivity to compatible strains of M.grisea (PubMed:23347338, PubMed:18786507). Impaired jasmonic acid accumulation in response to wounding (PubMed:18786507, PubMed:23347338, PubMed:14605232). In cpm2 and hebiba mutants, inversed response to light characterized by long-coleoptile phenotype under continuous white (WL), red (RL), far-red (FR) and blue (BL) lights due to impaired photoinhibition of coleoptile elongation, and short-coleoptile in darkness (PubMed:14605232, PubMed:23347338, PubMed:19184094). In the dark, long mesocotyl and short coleoptile associated with protochlorophyllides accumulation (PubMed:14605232, PubMed:15570396). In continuous far red (FRc) light: short mesocotyl and long coleoptile associated with a less pronounced reduction of phyA levels and no shift of the ratio between phyA' and phyA'' and abnormal induction of Pchlide(655) accumulation (PubMed:15570396). Delayed photodestruction of phyA upon activation by RL and FR lights (PubMed:19184094). In etiolated seedlings, higher levels of abscisic acid (ABA) but reduced levels of auxin indolyl-3-acetic acid (IAA) compensed by a strongly enhanced sensitivity to auxin on growth stimulation. Adult mutant plants exhibit excessive light green leaf growth, not erected but hanging downwards and even creeping along the soil. Impaired accumulation of basal O-phytodienoic acid (OPDA) and apical JA in response to red light and wounding. Altered induction of OPR by red light (PubMed:14605232). Reduced male fertility leading to almost sterility with only a few fertile seeds in each panicle (PubMed:14605232, PubMed:23347338). Abnormal flower development characterized by sterile long lemmas, and sometimes elongated palea with additional bract-like organs between the lemma and palea as well as additional anthers and pistils (PubMed:23347338). Early flowering time (heading) (PubMed:14605232, PubMed:23347338). All these symptoms are rescued by exogenous methyl jasmonate (PubMed:14605232, PubMed:19184094). Impaired in Pseudomonas fluorescens WCS374r-mediated induced systemic resistance (ISR) against M.oryzae (PubMed:18945932). Reduced levels of PAL and lignin. Altered riboflavin-induced resistance to Rhizoctonia solani (PubMed:19729221). Reduced sensitivity to salt (NaCl) stress due to a better scavenging of reactive oxygen species (ROS), thus enhancing antioxidative power; lower accumulate of Na(+) ions in shoots but not in roots (PubMed:25873666). Increased sensitivity to the root feeder insect rice water weevil Lissorhoptrus oryzophilus (PubMed:25627217). Severe susceptibility to the root hemiparasite witchweed Striga hermonthica (PubMed:26025049). {ECO:0000269|PubMed:14605232, ECO:0000269|PubMed:15570396, ECO:0000269|PubMed:18786507, ECO:0000269|PubMed:18945932, ECO:0000269|PubMed:19184094, ECO:0000269|PubMed:19729221, ECO:0000269|PubMed:23347338, ECO:0000269|PubMed:25627217, ECO:0000269|PubMed:25873666, ECO:0000269|PubMed:26025049}. FUNCTION: Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid (JA) (PubMed:23347338, PubMed:14605232). Required for the production of JA in response to wounding (PubMed:14605232, PubMed:18786507). Necessary for flower and coleoptile development regulation by light, including blue (BL), red (RL) and far red (FR) lights (PubMed:23347338, PubMed:14605232, PubMed:15570396). Involved in the auxin-mediated signaling pathway leading to growth stimulation (PubMed:14605232, PubMed:19184094). Essential for photodestruction of phyA upon activation by RL and FR (PubMed:19184094). Implicated in responses to salt stress (NaCl) (PubMed:25873666). {ECO:0000269|PubMed:14605232, ECO:0000269|PubMed:15570396, ECO:0000269|PubMed:18786507, ECO:0000269|PubMed:19184094, ECO:0000269|PubMed:23347338, ECO:0000269|PubMed:25873666}.; FUNCTION: Confers resistance to incompatible strains of the blast fungus Magnaporthe grisea, jasmonic acid (JA) thus playing a significant role in the resistance to fungal infection (PubMed:23347338). Implicated in riboflavin-induced resistance to the sheath blight Rhizoctonia solani (PubMed:19729221). Required for Pseudomonas fluorescens WCS374r-mediated JA-dependent induced systemic resistance (ISR) against M.oryzae (PubMed:18945932). Confers some resistance, independently of the JA pathway but probably via OPDA accumulation, to brown planthopper (BPH, Nilaparvata lugens), a destructive, monophagous, piercing-sucking insect, mainly by reducing its feeding activity and survival rate (PubMed:25239066, PubMed:25627217). Triggers resistance to the chewing insect striped stem borer (SSB) Chilo suppressalis, to the root hemiparasite witchweed Striga hermonthica, and to the root feeder insect rice water weevil Lissorhoptrus oryzophilus, in a JA-dependent manner, by attenuating both the growth mass and growth rate of caterpillars (PubMed:25239066, PubMed:25627217, PubMed:26025049). {ECO:0000269|PubMed:18945932, ECO:0000269|PubMed:19729221, ECO:0000269|PubMed:23347338, ECO:0000269|PubMed:25239066, ECO:0000269|PubMed:25627217, ECO:0000269|PubMed:26025049}. MISCELLANEOUS: 'Hebiba' means snake leaf in Japanese. {ECO:0000303|PubMed:14605232}. ENOG411DX02 DGD2 Q8W1S1 DGDG2_ARATH Digalactosyldiacylglycerol synthase 2, chloroplastic (EC 2.4.1.241) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:14600212}. FUNCTION: Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid membranes. Specific for alpha-glycosidic linkages (PubMed:11696551, PubMed:14600212). During phosphate shortage, involved in the biosynthesis of digalactosyldiacylglycerol (DGDG) which rescues the limitation of phospholipids (Probable). {ECO:0000269|PubMed:11696551, ECO:0000269|PubMed:14600212, ECO:0000305|PubMed:21506606}. MetaCyc:AT4G00550-MONOMER; 2.4.1.241 53907 Digalactosyldiacylglycerol synthase 2, chloroplastic (EC 2.4.1.241) chloroplast outer membrane [GO:0009707]; digalactosyldiacylglycerol synthase activity [GO:0046481]; UDP-galactosyltransferase activity [GO:0035250]; UDP-glycosyltransferase activity [GO:0008194]; cellular response to phosphate starvation [GO:0016036]; glycolipid biosynthetic process [GO:0009247] TISSUE SPECIFICITY: Expressed in leaves, flowers and roots, but not in stems and siliques. {ECO:0000269|PubMed:14600212}. locus:2126998; AT4G00550 digalactosyldiacylglycerol synthase 2 Digalactosyldiacylglycerol synthase 2, putative, expressed (Name) (Os03g0268300 protein) (cDNA clone:J033102K23, full insert sequence),Digalactosyldiacylglycerol synthase 2, putative, expressed (Os03g0214400 protein),Os03g0268300 protein (Fragment) Q84JT4,Q10Q06,A0A0P0VW43 Q84JT4_ORYSJ,Q10Q06_ORYSJ,A0A0P0VW43_ORYSJ OSJNBa0071M09.1 LOC_Os03g16140 Os03g0268300 OJA1364E02.10 OSNPB_030268300,LOC_Os03g11560 Os03g0214400 OsJ_09908 OSNPB_030214400,Os03g0268300 OSNPB_030268300 ENOG411DX04 F4IVU7 F4IVU7_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein 149840 RNA-binding (RRM/RBD/RNP motifs) family protein commitment complex [GO:0000243]; nuclear speck [GO:0016607]; U2-type prespliceosome [GO:0071004]; U2AF [GO:0089701]; poly-pyrimidine tract binding [GO:0008187]; pre-mRNA 3'-splice site binding [GO:0030628] locus:1005716652; AT2G33435 RNA recognition Os01g0956600 protein (Splicing factor family protein-like) (cDNA clone:J033112L14, full insert sequence),Os03g0138100 protein Q5JJU2,A0A0P0VST4 Q5JJU2_ORYSJ,A0A0P0VST4_ORYSJ Os01g0956600 B1139B11.36 OJ1294_F06.5 OSNPB_010956600,Os03g0138100 OSNPB_030138100 ENOG411DX06 CNX2 Q39055,A0A1P8B110 CNX2_ARATH,A0A1P8B110_ARATH GTP 3',8-cyclase, mitochondrial (EC 4.1.99.22) (Molybdenum cofactor biosynthesis enzyme CNX2) (Molybdopterin biosynthesis protein CNX2) (Molybdopterin precursor Z synthase),Cofactor of nitrate reductase and xanthine dehydrogenase 2 FUNCTION: Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate. {ECO:0000250|UniProtKB:P69848}. PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. ARA:AT2G31955-MONOMER;MetaCyc:AT2G31955-MONOMER; R-ATH-947581; 4.1.99.22 43413,39347 GTP 3',8-cyclase, mitochondrial (EC 4.1.99.22) (Molybdenum cofactor biosynthesis enzyme CNX2) (Molybdopterin biosynthesis protein CNX2) (Molybdopterin precursor Z synthase),Cofactor of nitrate reductase and xanthine dehydrogenase 2 chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; molybdopterin synthase complex [GO:0019008]; 4 iron, 4 sulfur cluster binding [GO:0051539]; GTP 3',8'-cyclase activity [GO:0061798]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777],molybdopterin synthase complex [GO:0019008]; 4 iron, 4 sulfur cluster binding [GO:0051539]; catalytic activity [GO:0003824]; metal ion binding [GO:0046872]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777] TISSUE SPECIFICITY: Expressed in all organs, with an abundant expression in the roots. locus:2827337; AT2G31955 biosynthesis protein Os02g0258900 protein (cDNA clone:J023104J24, full insert sequence),Os02g0258900 protein (cDNA, clone: J100015K17, full insert sequence),Molybdenum cofactor biosynthesis protein 1 A, putative, expressed (Os12g0507000 protein) (cDNA clone:J013009O17, full insert sequence),Os12g0507000 protein Q0E297,B7F9Y5,Q2QQ49,A0A0P0YAL9 Q0E297_ORYSJ,B7F9Y5_ORYSJ,Q2QQ49_ORYSJ,A0A0P0YAL9_ORYSJ Os02g0258900 Os02g0258900 OSNPB_020258900,Os02g0258900 OSNPB_020258900,Os12g0507000 LOC_Os12g32230 Os12g0507000 OSNPB_120507000,Os12g0507000 OSNPB_120507000 ENOG411DX07 PDIL2-1,UNE5 O22263,A8MSC5,F4IL53,F4IL52 PDI21_ARATH,A8MSC5_ARATH,F4IL53_ARATH,F4IL52_ARATH Protein disulfide-isomerase like 2-1 (AtPDIL2-1) (EC 5.3.4.1) (P5) (Protein MATERNAL EFFECT EMBRYO ARREST 30) (Protein UNFERTILIZED EMBRYO SAC 5) (Protein disulfide isomerase 11) (AtPDI11) (Protein disulfide-isomerase A6) (Protein disulfide-isomerase like 4-1) (AtPDIL4-1),AT2G47470 protein (Thioredoxin family protein),Thioredoxin family protein DISRUPTION PHENOTYPE: Smaller siliques and reduced seed set. Disrupted pollen tube guidance. {ECO:0000269|PubMed:19050167}. Reduced seed set due to delayed development of embryo sacs and resulting defect in pollen tube guidance.,Reduced seed set. Delayed embryo sac development results in defects in pollen tube guidance. Female gametophyte defective; Embryo defective (inferred)-V. Sundaresan-2005 FUNCTION: Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development. {ECO:0000269|PubMed:19050167}. 5.3.4.1 39497,36565,29217,35621 Protein disulfide-isomerase like 2-1 (AtPDIL2-1) (EC 5.3.4.1) (P5) (Protein MATERNAL EFFECT EMBRYO ARREST 30) (Protein UNFERTILIZED EMBRYO SAC 5) (Protein disulfide isomerase 11) (AtPDI11) (Protein disulfide-isomerase A6) (Protein disulfide-isomerase like 4-1) (AtPDIL4-1),AT2G47470 protein (Thioredoxin family protein),Thioredoxin family protein endoplasmic reticulum [GO:0005783]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; double fertilization forming a zygote and endosperm [GO:0009567]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; pollen tube development [GO:0048868]; protein folding [GO:0006457]; response to cadmium ion [GO:0046686]; response to endoplasmic reticulum stress [GO:0034976],endoplasmic reticulum [GO:0005783]; isomerase activity [GO:0016853]; cell redox homeostasis [GO:0045454],cell [GO:0005623]; isomerase activity [GO:0016853]; cell redox homeostasis [GO:0045454] DEVELOPMENTAL STAGE: During flower development, expressed at early stage in inner and outer integuments, and nucellar cells. Later, expressed in the integument cells but not in the embryo sac. In the mature ovule, highly expressed in the micropylar region. After fertilization, expressed in the seed integuments but not in the embryo. {ECO:0000269|PubMed:19050167}. TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595, ECO:0000269|PubMed:19050167}. locus:2062029; AT2G47470 Protein disulfide isomerase Protein disulfide isomerase-like 2-1 (OsPDIL2-1) (EC 5.3.4.1) (Protein disulfide isomerase-like 4-1) (OsPDIL4-1),Protein disulfide isomerase-like 2-2 (OsPDIL2-2) (EC 5.3.4.1) (Protein disulfide isomerase-like 4-2) (OsPDIL4-2) Q75M08,Q942L2 PDI21_ORYSJ,PDI22_ORYSJ PDIL2-1 PDIL4-1 Os05g0156300 LOC_Os05g06430 OsJ_17181 P0431G05.14 P0676G05.4,PDIL2-2 PDIL4-2 Os01g0339900 LOC_Os01g23740 B1088D01.21 OsJ_01619 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411DX08 CHX28 Q8L709 CHX28_ARATH Cation/H(+) antiporter 28 (Protein CATION/H+ EXCHANGER 28) (AtCHX28) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 88710 Cation/H(+) antiporter 28 (Protein CATION/H+ EXCHANGER 28) (AtCHX28) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:2083830; AT3G52080 Cation H( ) antiporter Os12g0640500 protein Q0ILK2 Q0ILK2_ORYSJ Os12g0640500 Os12g0640500 OSNPB_120640500 ENOG411EGK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40S ribosomal protein S3a NA NA NA NA NA NA NA ENOG411EGK4 Q9FLU0,O22947 Q9FLU0_ARATH,O22947_ARATH Gb|AAC02775.1 (Uncharacterized protein At5g24640),Calcium-binding site protein (Uncharacterized protein At2g41730) 13392,13265 Gb|AAC02775.1 (Uncharacterized protein At5g24640),Calcium-binding site protein (Uncharacterized protein At2g41730) cytoplasm [GO:0005737]; nucleus [GO:0005634]; anaerobic respiration [GO:0009061] locus:2153949;,locus:2054411; AT5G24640,AT2G41730 NA NA NA NA NA NA NA NA ENOG411EGKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tetratricopeptide repeat domain NA NA NA NA NA NA NA ENOG411EGKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec63 Brl domain NA NA NA NA NA NA NA ENOG411EGKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0552200 protein,Os08g0553250 protein (Fragment),Os08g0551432 protein,Os08g0553150 protein (Fragment),Os08g0552633 protein Q0J3U7,A0A0P0XJ63,A0A0N7KQ95,A0A0N7KQ97,A0A0P0XJ41 Q0J3U7_ORYSJ,A0A0P0XJ63_ORYSJ,A0A0N7KQ95_ORYSJ,A0A0N7KQ97_ORYSJ,A0A0P0XJ41_ORYSJ Os08g0552200 Os08g0552200 OSNPB_080552200,Os08g0553250 OSNPB_080553250,Os08g0551432 OSNPB_080551432,Os08g0553150 OSNPB_080553150,Os08g0552633 OSNPB_080552633 ENOG411EGKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E07G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Expressed protein (Os12g0145200 protein) (cDNA clone:002-182-H05, full insert sequence),Os02g0197300 protein Q2QXS3,A0A0P0VG96 Q2QXS3_ORYSJ,A0A0P0VG96_ORYSJ LOC_Os12g05060 Os12g0145200 OSNPB_120145200,Os02g0197300 OSNPB_020197300 ENOG411EAHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitin recognition protein NA NA NA NA NA NA NA ENOG411EAHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter ABC transporter-like protein (Os09g0125900 protein) (cDNA clone:J013034I10, full insert sequence),Os10g0163220 protein,Os09g0250800 protein,Os10g0163290 protein Q6K376,Q10A33,A0A0P0XK84,A0A0P0XSQ4 Q6K376_ORYSJ,Q10A33_ORYSJ,A0A0P0XK84_ORYSJ,A0A0P0XSQ4_ORYSJ Os09g0125900 OSJNBa0025H18.32 OSNPB_090125900,Os10g0163220 LOC_Os10g08010 OsJ_30812 OSNPB_100163220,Os09g0250800 OSNPB_090250800,Os10g0163290 OSNPB_100163290 ENOG411EAH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os10g0111100 protein A0A0P0XS34 A0A0P0XS34_ORYSJ Os10g0111100 OSNPB_100111100 ENOG411EAH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EAH0 MOJ10.10 A0A1I9LPS9,F4JEW1,A0A1I9LPT0 A0A1I9LPS9_ARATH,F4JEW1_ARATH,A0A1I9LPT0_ARATH Uncharacterized protein 26195,32989,26407 Uncharacterized protein locus:2829872; AT3G27025 NA NA NA NA NA NA NA NA ENOG411EAH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAH8 MYH19.7 Q9FLE6 Q9FLE6_ARATH Transmembrane protein (Uncharacterized protein At5g39880) 40403 Transmembrane protein (Uncharacterized protein At5g39880) integral component of membrane [GO:0016021] locus:2178022; AT5G39880 NA NA NA NA NA NA NA NA ENOG411E79W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome oxidase c subunit VIb NA NA NA NA NA NA NA ENOG411E0M4 Q94CC1,A0A1P8BGK8,A0A1P8BGK3,A0A1P8BGK4,A0A1P8BGI5 Q94CC1_ARATH,A0A1P8BGK8_ARATH,A0A1P8BGK3_ARATH,A0A1P8BGK4_ARATH,A0A1P8BGI5_ARATH Heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) (Uncharacterized protein At5g27730),Heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) ARA:GQT-2619-MONOMER; R-ATH-2024096;R-ATH-6798695; 53748,40117,44928,34020,42840 Heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) (Uncharacterized protein At5g27730),Heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2180305; AT5G27730 heparan-alpha-glucosaminide N-acetyltransferase-like Os01g0931100 protein (cDNA clone:J013159E17, full insert sequence) Q5JK28 Q5JK28_ORYSJ Os01g0931100 Os01g0931100 OSJNBa0052O12.39 OSNPB_010931100 P0506E04.17 ENOG411E0MT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os07g0662700 protein (Selenium-binding protein-like) Q8H2U1 Q8H2U1_ORYSJ P0453E03.118 Os07g0662700 OsJ_25464 OSNPB_070662700 ENOG411E0MV CSLC6 Q9SRT3 CSLC6_ARATH Probable xyloglucan glycosyltransferase 6 (EC 2.4.1.-) (Cellulose synthase-like protein C6) (AtCslC6) FUNCTION: Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose. Seems to work simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a noncellulosic polysaccharides of plant cell wall and consists of a glucan backbone substituted by xylose, galactose and fucose (By similarity). {ECO:0000250}. ARA:AT3G07330-MONOMER; 2.4.1.- 78371 Probable xyloglucan glycosyltransferase 6 (EC 2.4.1.-) (Cellulose synthase-like protein C6) (AtCslC6) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pollen tube development [GO:0048868] locus:2079661; AT3G07330 xyloglucan glycosyltransferase NA NA NA NA NA NA NA ENOG411E0MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0312000 protein A0A0N7KKI3 A0A0N7KKI3_ORYSJ Os05g0312000 OSNPB_050312000 ENOG411E0MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF630) Os11g0564600 protein,Os02g0654600 protein,Os05g0547200 protein Q2R2H2,A0A0P0VMF1,A0A0N7KL68 Q2R2H2_ORYSJ,A0A0P0VMF1_ORYSJ,A0A0N7KL68_ORYSJ Os11g0564600 LOC_Os11g35830 OsJ_34285 OSNPB_110564600,Os02g0654600 OSNPB_020654600,Os05g0547200 OSNPB_050547200 ENOG411E0MR orf 05,ARO4 Q38957,A0A1I9LTS0 Q38957_ARATH,A0A1I9LTS0_ARATH Armadillo repeat only 4 (At3g26600) (Orf 05 protein),Armadillo repeat only 4 67806,58919 Armadillo repeat only 4 (At3g26600) (Orf 05 protein),Armadillo repeat only 4 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506] locus:2088832; AT3G26600 armadillo beta-catenin repeat family protein NA NA NA NA NA NA NA ENOG411E0MY PCMP-E103 Q9FGL1 PP423_ARATH Putative pentatricopeptide repeat-containing protein At5g47460 64398 Putative pentatricopeptide repeat-containing protein At5g47460 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2168963; AT5G47460 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E0MZ Q8W467 Q8W467_ARATH Electron transporter, putative (DUF179) (Uncharacterized protein At1g33780) (Uncharacterized protein At1g33780; F14M2.10) 36392 Electron transporter, putative (DUF179) (Uncharacterized protein At1g33780) (Uncharacterized protein At1g33780; F14M2.10) chloroplast [GO:0009507] locus:2012628; AT1G33780 UPF0301 protein Os05g0420200 protein,Os01g0886000 protein Q60DV8,Q8S0Q9 Q60DV8_ORYSJ,Q8S0Q9_ORYSJ Os05g0420200 OsJ_18583 OSNPB_050420200 P0426G01.14,Os01g0886000 OsJ_04335 OSNPB_010886000 P0408G07.23 P0434C04.2 ENOG411E0MD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0529900 protein (Fragment) Q0IMX7 Q0IMX7_ORYSJ Os12g0529900 Os12g0529900 OSNPB_120529900 ENOG411E0MF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os02g0779900 protein (Putative subtilisin-like proteinase) Q6K7F9 Q6K7F9_ORYSJ Os02g0779900 OJ1293_A01.21 OsJ_08604 OSNPB_020779900 ENOG411E0MG SDRA Q9S9W2 SDRA_ARATH Short-chain dehydrogenase/reductase SDRA (EC 1.1.-.-) (Protein INDOLE-3-BUTYRIC ACID RESPONSE 1) (Short-chain dehydrogenase/reductase A) DISRUPTION PHENOTYPE: Defective in root hair expansion (PubMed:20562230). Mutant plants are resistant to the inhibitory effect of intermediate levels of indole-3-butyric acid (IBA) and 2,4-DB on root elongation (PubMed:18725356, PubMed:19043666). {ECO:0000269|PubMed:18725356, ECO:0000269|PubMed:19043666, ECO:0000269|PubMed:20562230}. The ibr1 mutants are resistant to the inhibitory effects of indole-3-butyric acid on root elongation but their roots show the normal response to indole-3-acetic acid.,The ibr1-2 mutants are resistant to the inhibitory effects of intermediate levels of indole-3-butyric acid on root elongation but their roots show the normal response to indole-3-acetic acid NAA and 2.4-D. Their root growth is also resistant to 24-DB a compound that can be processed to produce 24-D via beta-oxidation. Lateral root proliferation in response to IBA is also reduced dramatically in ibr1-2 mutants although they still produce normal numbers of lateral roots in response to NAA. ibr1-2 mutants do not require sucrose for dark-grown hypocotyl elongation suggesting that they do not have a general defect in peroxisomal beta-oxidation. And their root growth is not inhibited by propionate or isobutyrate suggesting that IBR1 is not required for the metabolism of these compounds. ibr1-2 mutants are fertile suggesting that IBR1 is not required for JA metabolism and they also have a wild-type size morphology and pigmentation. Insensitive to IBA-J. Bussell-2009 FUNCTION: Involved with IBR3 and IBR10 in the peroxisomal beta-oxidation of indole-3-butyric acid (IBA) to form indole-3-acetic acid (IAA), a biologically active auxin. May be responsible for catalyzing the dehydrogenation step in the conversion of IBA (PubMed:20562230). May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth (PubMed:19043666). {ECO:0000269|PubMed:19043666, ECO:0000269|PubMed:20562230}. ARA:AT4G05530-MONOMER; R-ATH-5365859; 1.1.-.- 26765 Short-chain dehydrogenase/reductase SDRA (EC 1.1.-.-) (Protein INDOLE-3-BUTYRIC ACID RESPONSE 1) (Short-chain dehydrogenase/reductase A) peroxisome [GO:0005777]; oxidoreductase activity [GO:0016491]; fatty acid metabolic process [GO:0006631]; indolebutyric acid metabolic process [GO:0080024]; response to indolebutyric acid [GO:0080026]; root hair elongation [GO:0048767] locus:2135467; AT4G05530 Dehydrogenase reductase SDR family member Os09g0133200 protein (Putative NADPH-dependent retinol dehydrogenase/reductase) (cDNA clone:006-306-E02, full insert sequence) (cDNA clone:J033041K02, full insert sequence) Q6K447 Q6K447_ORYSJ Os09g0133200 OsJ_28455 OSJNBa0095O23.44 OSNPB_090133200 P0406E03.18 ENOG411E0MJ LAC5,LAC12 Q9SIY8,Q9FLB5 LAC5_ARATH,LAC12_ARATH Laccase-5 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 5) (Diphenol oxidase 5) (Urishiol oxidase 5),Laccase-12 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 12) (Diphenol oxidase 12) (Urishiol oxidase 12) no observable phenotype FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ARA:AT2G40370-MONOMER;,ARA:AT5G05390-MONOMER; 1.10.3.2 64133,62734 Laccase-5 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 5) (Diphenol oxidase 5) (Urishiol oxidase 5),Laccase-12 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 12) (Diphenol oxidase 12) (Urishiol oxidase 12) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274]; response to copper ion [GO:0046688],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Ubiquitous and constitutive. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}.,TISSUE SPECIFICITY: Predominantly expressed in the inflorescence stem. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2063109;,locus:2153469; AT2G40370,AT5G05390 Lignin degradation and detoxification of lignin-derived products (By similarity) Putative laccase-17 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 17) (Diphenol oxidase 17) (Urishiol oxidase 17),Laccase-3 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 3) (Diphenol oxidase 3) (Urishiol oxidase 3),Laccase-23 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 23) (Diphenol oxidase 23) (Urishiol oxidase 23),Os11g0108650 protein,Os11g0108700 protein Q2RBK2,Q941X2,Q2QYS3,A0A0P0XYE9,A0A0P0XXY5 LAC17_ORYSJ,LAC3_ORYSJ,LAC23_ORYSJ,A0A0P0XYE9_ORYSJ,A0A0P0XXY5_ORYSJ LAC17 Os11g0108700 LOC_Os11g01730 OsJ_031367,LAC3 Os01g0827300 LOC_Os01g61160 B1088C09.5 OsJ_03932,LAC23 Os12g0108000 LOC_Os12g01730,Os11g0108650 OSNPB_110108650,Os11g0108700 OSNPB_110108700 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411EDEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0543300 protein A0A0P0XQS6 A0A0P0XQS6_ORYSJ Os09g0543300 OSNPB_090543300 ENOG411EDEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411EDEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HAT Os06g0235800 protein (Putative adapter protein) Q67V88 Q67V88_ORYSJ Os06g0235800 OsJ_20733 OSJNBa0080E19.27 OSNPB_060235800 ENOG411EDED Q9ZUU5,Q84WH0,Q9SJJ2,A0A1P8AXD1,A0A1P8B0H2,F4IHR5 Q9ZUU5_ARATH,Q84WH0_ARATH,Q9SJJ2_ARATH,A0A1P8AXD1_ARATH,A0A1P8B0H2_ARATH,F4IHR5_ARATH Eukaryotic aspartyl protease family protein (Putative chloroplast nucleoid DNA binding protein),At2g28040 (Eukaryotic aspartyl protease family protein) (Putative chloroplast nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein,Aspartic proteinase CDR1-like protein 42859,42992,43123,42139,43698,44005 Eukaryotic aspartyl protease family protein (Putative chloroplast nucleoid DNA binding protein),At2g28040 (Eukaryotic aspartyl protease family protein) (Putative chloroplast nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein,Aspartic proteinase CDR1-like protein aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190] locus:2046158;,locus:2046228;,locus:2057831;,locus:2062809; AT2G28030,AT2G28040,AT2G28010,AT2G28220 aspartyl protease-like protein NA NA NA NA NA NA NA ENOG411EDEE F20D23.17 Q940G8,A0A1P8AN49 Q940G8_ARATH,A0A1P8AN49_ARATH RING/U-box superfamily protein (Uncharacterized protein At1g17140) (Uncharacterized protein At1g17140; F20D23.17),RING/U-box superfamily protein 37696,34174 RING/U-box superfamily protein (Uncharacterized protein At1g17140) (Uncharacterized protein At1g17140; F20D23.17),RING/U-box superfamily protein locus:505006125; AT1G17145 Inherit from KOG: May negatively regulate the SNF1 kinase (By similarity) NA NA NA NA NA NA NA ENOG411EDEF Q9FRR8,A0A1P8ART5 Q9FRR8_ARATH,A0A1P8ART5_ARATH ENTH/VHS family protein (F22O13.15) (Uncharacterized protein At1g08670),ENTH/VHS family protein 26543,20172 ENTH/VHS family protein (F22O13.15) (Uncharacterized protein At1g08670),ENTH/VHS family protein locus:2025555; AT1G08670 ENTH domain NA NA NA NA NA NA NA ENOG411EDEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EDEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EDEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EDEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 NA NA NA NA NA NA NA ENOG411EDEM O65921,A0A1P8AYR2 GDL35_ARATH,A0A1P8AYR2_ARATH GDSL esterase/lipase At2g19010 (EC 3.1.1.-) (Extracellular lipase At2g19010),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT2G19010-MONOMER; 3.1.1.- 38162,42281 GDSL esterase/lipase At2g19010 (EC 3.1.1.-) (Extracellular lipase At2g19010),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],integral component of membrane [GO:0016021]; hydrolase activity, acting on ester bonds [GO:0016788] locus:2044425; AT2G19010 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411EDEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os01g0967700 protein (Fragment),Os01g0714175 protein,Os01g0714250 protein,Os05g0232300 protein Q0JFQ3,A0A0P0V7A7,A0A0P0V7C7,A0A0P0WJT3 Q0JFQ3_ORYSJ,A0A0P0V7A7_ORYSJ,A0A0P0V7C7_ORYSJ,A0A0P0WJT3_ORYSJ Os01g0967700 Os01g0967700 OSNPB_010967700,Os01g0714175 OSNPB_010714175,Os01g0714250 OSNPB_010714250,Os05g0232300 OSNPB_050232300 ENOG411EDEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family NA NA NA NA NA NA NA ENOG411EDEQ P0DI78,Q8GW16,P0DI79 U496D_ARATH,U496H_ARATH,U496P_ARATH UPF0496 protein At3g28290 (Protein At14a),UPF0496 protein At5g66675,UPF0496 protein At3g28300 (Protein At14a) 42955,46371 UPF0496 protein At3g28290 (Protein At14a),UPF0496 protein At5g66675,UPF0496 protein At3g28300 (Protein At14a) integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10196471}. locus:1005716837; AT3G28290,AT5G66675,AT3G28300 Protein of unknown function (DUF677) NA NA NA NA NA NA NA ENOG411EDER CYP83A1,CYP83B1 P48421,O65782 C83A1_ARATH,C83B1_ARATH Cytochrome P450 83A1 (EC 1.14.14.43) (CYPLXXXIII) (Protein REDUCED EPIDERMAL FLUORESCENCE 2),Cytochrome P450 83B1 (EC 1.14.14.45) (Protein ALTERED TRYPTOPHAN REGULATION 4) (Protein RED ELONGATED 1) (Protein SUPERROOT 2) DISRUPTION PHENOTYPE: Reduced levels of all aliphatic glucosinolates and increased levels of indole-derived glucosinolates in leaves.,DISRUPTION PHENOTYPE: Runt phenotype (small plants with hooked leaves). Epinastic leaves and defect in root development. High levels of endogenous free auxin. Altered tryptophan genes regulation. {ECO:0000269|PubMed:11158532, ECO:0000269|PubMed:11553739, ECO:0000269|PubMed:11805067, ECO:0000269|PubMed:14963708, ECO:0000269|PubMed:9675903, ECO:0000269|PubMed:9808718}. Compared to the lead extracts comparable reductions in alkylglucosinolate profiles were observed when samples of ref2 seeds were analyzed; however no consistent increases in indole glucosinolates were seen. In addition to decreases in the glucosinolates listed above seeds of the mutants also contained significantly less benzoyloxyalkyl glucosinolates.,Leaf extracts of mutant plants contain less short-chain (3-methylsulfinylpropyl 4-methylthiobutyl and 4-methylsulfinylbutyl) and long-chain (5-methylsulfinylpropyl 5-methylthiopropyl 7-methylsulfinylheptyl 7-methylthioheptyl 8-methylsulfinyloctyl and 8-methylthio-octyl) Met-derived glucosinolates. Concomitant with the decreases in alkylglucosinolates the leaf extracts show increased levels of the indole glucosinolates indol-3-ylmethyl 4-methoxyindol-3-ylmethyl and 1-methoxyindol-3-ylmethyl glucosinolate. Because of the decrease in alkylglucosinolates and the increase in indole glucosinolates the major glucosinolate accumulated in ref2 leaves is indol-3-ylglucosinolate.,No visible phenotype. Low levels of phenylpropanoid derivatives; No other phenotypes detected-C. Chapple-2003,High penetrance of seedling lethality; Short primary inflorescence stem; Complete loss of branching-R. Feyereisen-2001 FUNCTION: Involved in the metabolism of aliphatic and aromatic oximes (PubMed:12970475). Involved in the biosynthesis of both short-chain and long-chain aliphatic glucosinolates (PubMed:12509530). {ECO:0000269|PubMed:12509530, ECO:0000269|PubMed:12970475}.,FUNCTION: Involved in the metabolism of aromatic oximes. Catalyzes the oxime metabolizing step in indole glucosinolate biosynthesis by converting indole-3-acetaldoxime into indole-3-S-alkyl-thiohydroximate. Probably required for glucosinolate activation in response to pathogens. Functions in auxin homeostasis because indole-3-acetaldoxime also serves as a precursor for auxin biosynthesis. Specifically metabolizes (E)-p-hydroxyphenylacetaldoxime into an S-alkyl-thiohydroximate (PubMed:26361733). {ECO:0000269|PubMed:11114200, ECO:0000269|PubMed:11158532, ECO:0000269|PubMed:11333274, ECO:0000269|PubMed:11553739, ECO:0000269|PubMed:11805067, ECO:0000269|PubMed:12970475, ECO:0000269|PubMed:26361733}. MISCELLANEOUS: The sur2 mutant phenotype can be complemented by exogenous auxin or low pH medium. Plants overexpresseing SUR2 show decreased apical dominance. ARA:AT4G13770-MONOMER;MetaCyc:AT4G13770-MONOMER;,ARA:AT4G31500-MONOMER;MetaCyc:AT4G31500-MONOMER; 1.14.14.43,1.14.14.45 57449,56846 Cytochrome P450 83A1 (EC 1.14.14.43) (CYPLXXXIII) (Protein REDUCED EPIDERMAL FLUORESCENCE 2),Cytochrome P450 83B1 (EC 1.14.14.45) (Protein ALTERED TRYPTOPHAN REGULATION 4) (Protein RED ELONGATED 1) (Protein SUPERROOT 2) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; glucosinolate biosynthetic process [GO:0019761]; response to insect [GO:0009625],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; adventitious root development [GO:0048830]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; indole glucosinolate biosynthetic process [GO:0009759]; indoleacetic acid biosynthetic process [GO:0009684]; induced systemic resistance [GO:0009682]; regulation of growth [GO:0040008]; response to red light [GO:0010114]; shade avoidance [GO:0009641]; tryptophan biosynthetic process [GO:0000162] locus:2119500;,locus:2125264; AT4G13770,AT4G31500 cytochrome P450 family 83 subfamily A polypeptide 1 NA NA NA NA NA NA NA ENOG411EDES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EDET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411EDEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl CoA binding protein NA NA NA NA NA NA NA ENOG411EDEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDEW RGL2,RGL3 Q8GXW1,Q9LF53 RGL2_ARATH,RGL3_ARATH DELLA protein RGL2 (GRAS family protein 15) (AtGRAS-15) (RGA-like protein 2) (Scarecrow-like protein 19) (AtSCL19),DELLA protein RGL3 (GRAS family protein 27) (AtGRAS-27) (RGA-like protein 3) DISRUPTION PHENOTYPE: Higher germination rate in the presence of glucose and at supraoptimal temperature conditions. Rga, gai, rgl1, rgl2 and rgl3 pentuple mutant displays constitutive GA responses even in the absence of GA treatment. {ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:23482857}.,DISRUPTION PHENOTYPE: Rga, gai, rgl1, rgl2 and rgl3 pentuple mutant displays constitutive GA responses even in the absence of GA treatment. {ECO:0000269|PubMed:23482857}. Germination resistant to paclobutrazol (inhibitor of GA biosynthesis)-T. Sun-2004 FUNCTION: Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a major GA-response repressor of seed germination, including seed thermoinhibition. Promotes the biosynthesis of abscisic acid (ABA), especially in seed coats to maintain seed dormancy. Delays flowering and adult leaf production. Also regulates the floral development, petal, stamen and anther development, by repressing the continued growth of floral organs. Its activity is probably regulated by other phytohormones such as auxin and ethylene. Involved in the regulation of seed dormancy and germination, including glucose-induced delay of seed germination. Promotes salt tolerance. Acts as a repressor of positive regulators of trichome initiation. Required during the flagellin-derived peptide flg22-mediated growth inhibition. Contributes to the susceptibility to the biotrophic pathogen P.syringae pv. tomato and to the resistance to the necrotrophic pathogens B.cinerea A.brassicicola, probably by repressing the SA-defense pathway and preventing cell death. Prevents stress-induced reactive oxygen species (ROS) accumulation (e.g. salt stress) by acting on the ROS scavenging system, and delays ROS-induced cell death, thus promoting stress tolerance. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591, ECO:0000269|PubMed:16400150, ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:17141619, ECO:0000269|PubMed:17384169, ECO:0000269|PubMed:17704233, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:18450450, ECO:0000269|PubMed:18450451, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:20093430, ECO:0000269|PubMed:20956298}.,FUNCTION: Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}. 60494,57327 DELLA protein RGL2 (GRAS family protein 15) (AtGRAS-15) (RGA-like protein 2) (Scarecrow-like protein 19) (AtSCL19),DELLA protein RGL3 (GRAS family protein 27) (AtGRAS-27) (RGA-like protein 3) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; cell differentiation [GO:0030154]; defense response [GO:0006952]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; negative regulation of seed germination [GO:0010187]; response to abscisic acid [GO:0009737]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; gibberellic acid mediated signaling pathway [GO:0009740]; hyperosmotic salinity response [GO:0042538]; jasmonic acid mediated signaling pathway [GO:0009867]; multicellular organism development [GO:0007275]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; negative regulation of seed germination [GO:0010187]; regulation of reactive oxygen species metabolic process [GO:2000377]; regulation of seed dormancy process [GO:2000033]; response to abscisic acid [GO:0009737]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; salicylic acid mediated signaling pathway [GO:0009863]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in germinating seeds, flowers and siliques. Only detectable in the inflorescence, with high levels in young flower buds and significant levels in siliques. In imbibed seeds, it is restricted to seed coats, elongating regions of pre-emergent and recently emerged radicles, endosperm (especially micropylar endosperm), and embryonic axis. Not expressed in leaves, bolting stems or roots. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:19500306, ECO:0000269|PubMed:20093430, ECO:0000269|PubMed:20956298}.,TISSUE SPECIFICITY: Expressed at very low level. Mainly expressed in germinating seeds and flowers and siliques. Not expressed in other tissues. {ECO:0000269|PubMed:11826301}. locus:2099624;,locus:2157477; AT3G03450,AT5G17490 Transcriptional regulator DELLA protein N terminal NA NA NA NA NA NA NA ENOG411EDEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter NA NA NA NA NA NA NA ENOG411EDEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP D-mannose binding lectin family protein, expressed (Os12g0257900 protein) (cDNA clone:002-174-A01, full insert sequence) (cDNA clone:J033150F13, full insert sequence) Q2QUP5 Q2QUP5_ORYSJ Os12g0257900 LOC_Os12g15550 Os12g0257900 OSNPB_120257900 ENOG411EDEZ FAR6,T2O9.40 B9TSP7,Q9M1D7 FACR6_ARATH,Q9M1D7_ARATH Fatty acyl-CoA reductase 6, chloroplastic (EC 1.2.1.84),Fatty acyl-CoA reductase (EC 1.2.1.84) FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. May be involved in the generation of C30 primary alcohol. {ECO:0000269|PubMed:16980563, ECO:0000269|PubMed:19062129}.,FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. {ECO:0000256|RuleBase:RU363097}. ARA:AT3G56700-MONOMER; R-ATH-8848584; 1.2.1.42;1.2.1.50;1.2.1.B25; 1.2.1.84 61626,17497 Fatty acyl-CoA reductase 6, chloroplastic (EC 1.2.1.84),Fatty acyl-CoA reductase (EC 1.2.1.84) chloroplast [GO:0009507]; fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; lipid metabolic process [GO:0006629]; long-chain fatty-acyl-CoA metabolic process [GO:0035336]; response to wounding [GO:0009611]; suberin biosynthetic process [GO:0010345],intracellular membrane-bounded organelle [GO:0043231]; fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; lipid metabolic process [GO:0006629]; long-chain fatty-acyl-CoA metabolic process [GO:0035336]; suberin biosynthetic process [GO:0010345] locus:2103575;,locus:2101432; AT3G56700,AT3G60060 fatty acyl-CoA reductase (alcohol-forming) oxidoreductase acting on the CH-CH group of donors NAD or NADP as acceptor NA NA NA NA NA NA NA ENOG411EDE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDE1 JAL40,JAL41,JAL42,JAL46,JAL9,JAL20,JAL10,JAL17,JAL47,JAL4,JAL8,JAL11 Q9LKR6,Q9FGC5,Q9FGC4,Q9LTA8,F4IB95,O80998,Q8GWI7,O80736,Q9LTA7,Q9LQ31,F4IB94,Q5XF82,A0A1P8AWF8,A0A1P8ASF2,A0A1P8AS93,A0A1P8AS94,A0A1P8B2D4,A0A1P8AR36,A0A1P8AWL3,A0A1P8AS89,A0A1P8AP29,A0A1P8AP51 JAL40_ARATH,JAL41_ARATH,JAL42_ARATH,JAL46_ARATH,JAL9_ARATH,JAL20_ARATH,JAL10_ARATH,JAL17_ARATH,JAL47_ARATH,JAL4_ARATH,JAL8_ARATH,JAL11_ARATH,A0A1P8AWF8_ARATH,A0A1P8ASF2_ARATH,A0A1P8AS93_ARATH,A0A1P8AS94_ARATH,A0A1P8B2D4_ARATH,A0A1P8AR36_ARATH,A0A1P8AWL3_ARATH,A0A1P8AS89_ARATH,A0A1P8AP29_ARATH,A0A1P8AP51_ARATH Jacalin-related lectin 40,Jacalin-related lectin 41,Jacalin-related lectin 42,Jacalin-related lectin 46,Jacalin-related lectin 9,Jacalin-related lectin 20 (Myrosinase-binding protein-like At2g25980),Jacalin-related lectin 10,Jacalin-related lectin 17,Jacalin-related lectin 47,Jacalin-related lectin 4,Jacalin-related lectin 8,Jacalin-related lectin 11,Mannose-binding lectin superfamily protein,Jacalin lectin family protein 50205,48515,49022,66830,34160,48979,34045,66348,24305,81843,34646,48524,40217,48933,48905,48854,37600,32693,41805,48963,69037,54818 Jacalin-related lectin 40,Jacalin-related lectin 41,Jacalin-related lectin 42,Jacalin-related lectin 46,Jacalin-related lectin 9,Jacalin-related lectin 20 (Myrosinase-binding protein-like At2g25980),Jacalin-related lectin 10,Jacalin-related lectin 17,Jacalin-related lectin 47,Jacalin-related lectin 4,Jacalin-related lectin 8,Jacalin-related lectin 11,Mannose-binding lectin superfamily protein,Jacalin lectin family protein carbohydrate binding [GO:0030246],plasmodesma [GO:0009506]; carbohydrate binding [GO:0030246],chloroplast [GO:0009507]; carbohydrate binding [GO:0030246],membrane [GO:0016020]; carbohydrate binding [GO:0030246] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:23341152, ECO:0000269|PubMed:23603955}. locus:2182773;,locus:2162828;,locus:2162838;,locus:2155451;,locus:2034061;,locus:2057391;,locus:2034076;,locus:2195673;,locus:2155456;,locus:2012703;,locus:2034051;,locus:2034001; AT5G28520,AT5G35940,AT5G35950,AT5G49850,AT1G52060,AT2G25980,AT1G52070,AT1G60110,AT5G49860,AT1G33790,AT1G52050,AT1G52100 Jacalin lectin family protein NA NA NA NA NA NA NA ENOG411EDE2 TIFY11B,JAZ6 Q9C9E3,A0A1P8ARP3 TI11B_ARATH,A0A1P8ARP3_ARATH Protein TIFY 11B (Jasmonate ZIM domain-containing protein 6),Jasmonate-zim-domain protein 6 FUNCTION: Repressor of jasmonate responses. {ECO:0000269|PubMed:19151223}. 29850,22553 Protein TIFY 11B (Jasmonate ZIM domain-containing protein 6),Jasmonate-zim-domain protein 6 nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:2193957; AT1G72450 jasmonate-zim-domain protein 6 NA NA NA NA NA NA NA ENOG411EDE3 IQD31,IQD30 Q8L4D8,Q501D2 IQD31_ARATH,Q501D2_ARATH Protein IQ-DOMAIN 31,At1g18840 (IQ-domain 30) 65200,62732 Protein IQ-DOMAIN 31,At1g18840 (IQ-domain 30) cytosol [GO:0005829]; microtubule associated complex [GO:0005875]; plasma membrane [GO:0005886],vacuole [GO:0005773] locus:2019205;,locus:2034929; AT1G74690,AT1G18840 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EDE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDE5 SD11 O81833 SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 (EC 2.7.11.1) (S-domain-1 (SD1) receptor kinase 1) (SD1-1) 2.7.11.1 91875 G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 (EC 2.7.11.1) (S-domain-1 (SD1) receptor kinase 1) (SD1-1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin protein ligase binding [GO:0031625]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544] locus:2131694; AT4G27300 PAN_AP NA NA NA NA NA NA NA ENOG411EDE6 IDD6,IDD4 Q8RWX7,Q8GYC1,A0A1P8AN99,A0A1P8ANA3 IDD6_ARATH,IDD4_ARATH,A0A1P8AN99_ARATH,A0A1P8ANA3_ARATH Protein indeterminate-domain 6, chloroplastic,Protein indeterminate-domain 4, chloroplastic,C2H2-like zinc finger protein FUNCTION: Probable transcription factor. {ECO:0000305}.,FUNCTION: Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression. {ECO:0000305|PubMed:19726569}. 50636,55794,36127,52244 Protein indeterminate-domain 6, chloroplastic,Protein indeterminate-domain 4, chloroplastic,C2H2-like zinc finger protein chloroplast [GO:0009507]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; asymmetric cell division [GO:0008356]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; asymmetric cell division [GO:0008356]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] locus:2204503;,locus:2051688; AT1G14580,AT2G02080 zinc finger (C2H2 type) family protein NA NA NA NA NA NA NA ENOG411EDE7 ADT5,ADT4,ADT3 Q9FNJ8,O22241,Q9ZUY3 AROD5_ARATH,AROD4_ARATH,AROD3_ARATH Arogenate dehydratase 5, chloroplastic (AtADT5) (EC 4.2.1.91),Arogenate dehydratase 4, chloroplastic (AtADT4) (EC 4.2.1.91),Arogenate dehydratase 3, chloroplastic (AtADT3) (EC 4.2.1.91) (Prephenate dehydratase 1) (AtPDT1) DISRUPTION PHENOTYPE: Lack of Phe and Tyr accumulation after blue light irradiation of etiolated seedlings. {ECO:0000269|PubMed:16415218}. FUNCTION: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine. {ECO:0000269|PubMed:17726025}.,FUNCTION: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine. Together with GCR1 and GPA1, required for blue light-mediated synthesis of phenylpyruvate and subsequently of phenylalanine (Phe), in etiolated seedlings. {ECO:0000269|PubMed:16415218, ECO:0000269|PubMed:17726025}. MISCELLANEOUS: Has no detectable prehenate dehydratase activity. PATHWAY: Amino-acid biosynthesis; L-phenylalanine biosynthesis; L-phenylalanine from L-arogenate: step 1/1. ARA:AT5G22630-MONOMER;,ARA:AT3G44720-MONOMER;,ARA:AT2G27820-MONOMER; 4.2.1.91;,4.2.1.51;4.2.1.91; 4.2.1.91 45928,45925,46102 Arogenate dehydratase 5, chloroplastic (AtADT5) (EC 4.2.1.91),Arogenate dehydratase 4, chloroplastic (AtADT4) (EC 4.2.1.91),Arogenate dehydratase 3, chloroplastic (AtADT3) (EC 4.2.1.91) (Prephenate dehydratase 1) (AtPDT1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; arogenate dehydratase activity [GO:0047769]; L-phenylalanine biosynthetic process [GO:0009094],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; arogenate dehydratase activity [GO:0047769]; L-phenylalanine biosynthetic process [GO:0009094]; response to karrikin [GO:0080167],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; arogenate dehydratase activity [GO:0047769]; L-phenylalanine biosynthetic process [GO:0009094]; response to karrikin [GO:0080167]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; tyrosine biosynthetic process [GO:0006571] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. More abundant in stems and roots. {ECO:0000269|PubMed:17726025}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17726025}. locus:2162459;,locus:2101630;,locus:2042021; AT5G22630,AT3G44720,AT2G27820 arogenate dehydratase 5 NA NA NA NA NA NA NA ENOG411EDE8 Q9CA15 Q9CA15_ARATH Glycosyl hydrolase superfamily protein (Putative endo-1,3-beta-glucanase; 59333-58049) ARA:AT1G77790-MONOMER; 37889 Glycosyl hydrolase superfamily protein (Putative endo-1,3-beta-glucanase; 59333-58049) anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2203206; AT1G77790 Glycosyl hydrolase family 17 protein NA NA NA NA NA NA NA ENOG411EDE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: diacylglycerol lipase NA NA NA NA NA NA NA ENOG411E03Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region Os02g0323000 protein (Fragment) C7IY55 C7IY55_ORYSJ Os02g0323000 Os02g0323000 OSNPB_020323000 ENOG411EI3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os12g0113700 protein (Fragment),Os11g0113900 protein (Fragment) A0A0P0Y689,A0A0P0XYC5 A0A0P0Y689_ORYSJ,A0A0P0XYC5_ORYSJ Os12g0113700 OSNPB_120113700,Os11g0113900 OSNPB_110113900 ENOG411EI3J AGP23 Q8S2W4 AGP23_ARATH Arabinogalactan peptide 23 (AG-peptide 23) FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. {ECO:0000305}. 5970 Arabinogalactan peptide 23 (AG-peptide 23) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2076611; AT3G57690 NA NA NA NA NA NA NA NA ENOG411EI3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0352500 protein (Fragment) A0A0N7KRN0 A0A0N7KRN0_ORYSJ Os10g0352500 OSNPB_100352500 ENOG411EI3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0568100 protein (Fragment),Os04g0563500 protein,Os10g0159532 protein,Os09g0536133 protein,Os09g0545175 protein A0A0P0YBP0,A0A0P0WDK5,A0A0P0XSY6,A0A0P0XQY6,A0A0P0XQZ5 A0A0P0YBP0_ORYSJ,A0A0P0WDK5_ORYSJ,A0A0P0XSY6_ORYSJ,A0A0P0XQY6_ORYSJ,A0A0P0XQZ5_ORYSJ Os12g0568100 OSNPB_120568100,Os04g0563500 OSNPB_040563500,Os10g0159532 OSNPB_100159532,Os09g0536133 OSNPB_090536133,Os09g0545175 OSNPB_090545175 ENOG411EI30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S30 NA NA NA NA NA NA NA ENOG411EI36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E768 T22E16.230 Q58FW2,Q9M2S2,Q1G3G9 Q58FW2_ARATH,Q9M2S2_ARATH,Q1G3G9_ARATH Uncharacterized protein,Cytoplasmic tRNA 2-thiolation protein (Uncharacterized protein T22E16.230) 17366,12719,11826 Uncharacterized protein,Cytoplasmic tRNA 2-thiolation protein (Uncharacterized protein T22E16.230) locus:1006230200;,locus:2099971;,locus:4515103677; AT3G11405,AT3G55570,AT5G41761 NA Os01g0221400 protein Q9LE65 Q9LE65_ORYSJ Os01g0221400 Os01g0221400 OsJ_00916 OSNPB_010221400 P0443E05.1 P0483F08.38 ENOG411E769 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0635000 protein (Fragment) A0A0P0V5P4 A0A0P0V5P4_ORYSJ Os01g0635000 OSNPB_010635000 ENOG411E766 MUL3.2 Q9LU78,B3H6H3 Q9LU78_ARATH,B3H6H3_ARATH Transmembrane protein 6522,6554 Transmembrane protein integral component of membrane [GO:0016021] locus:2175549;,locus:4515103456; AT5G57080,AT4G26055 NA NA NA NA NA NA NA NA ENOG411E767 F3E22.8 Q9M7Y4 Q9M7Y4_ARATH F3E22.8 protein (Glycine-rich protein) 21447 F3E22.8 protein (Glycine-rich protein) locus:2083353; AT3G06780 NA NA NA NA NA NA NA NA ENOG411E764 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0337000 protein) (Os03g0337100 protein) (cDNA clone:002-135-E06, full insert sequence) Q10LS1 Q10LS1_ORYSJ Os03g0337000 LOC_Os03g21880 Os03g0337100 OSNPB_030337000 ENOG411E762 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0828800 protein (Fragment) A0A0P0VRP9 A0A0P0VRP9_ORYSJ Os02g0828800 OSNPB_020828800 ENOG411E761 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) NA NA NA NA NA NA NA ENOG411E76Z Q9SCJ8,Q9MA32,Q9LSF7,Q9LRX6,Q9FLV7 Y3961_ARATH,Y1593_ARATH,Y3518_ARATH,Y3485_ARATH,Y5405_ARATH Putative B3 domain-containing protein At3g49610,B3 domain-containing protein At1g05930,B3 domain-containing protein At3g25182,Putative B3 domain-containing protein At3g24850,B3 domain-containing protein At5g24050 38509,37356,39579,40669,39783 Putative B3 domain-containing protein At3g49610,B3 domain-containing protein At1g05930,B3 domain-containing protein At3g25182,Putative B3 domain-containing protein At3g24850,B3 domain-containing protein At5g24050 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2114668;,locus:2198763;,locus:2087283;,locus:2178662; AT3G49610,AT1G05930,AT3G25182,AT3G24850,AT5G24050 dna binding NA NA NA NA NA NA NA ENOG411E76X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0152900 protein) (Os11g0153000 protein) (Similar to At3g10120) (cDNA clone:002-188-H02, full insert sequence),Expressed protein (Os12g0153200 protein) (cDNA clone:002-140-C09, full insert sequence) Q53Q69,Q2QXK9 Q53Q69_ORYSJ,Q2QXK9_ORYSJ Os11g0153000 LOC_Os11g05490 Os11g0152900 OsJ_32994 OSNPB_110153000,LOC_Os12g05690 Os12g0153200 OsJ_35241 OSNPB_120153200 ENOG411E76Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411E76V Q6NL08,O80780,A0A1P8AXX8 Q6NL08_ARATH,O80780_ARATH,A0A1P8AXX8_ARATH At1g29530,Expressed protein (Uncharacterized protein At2g34310),Uncharacterized protein 24886,26144,25296 At1g29530,Expressed protein (Uncharacterized protein At2g34310),Uncharacterized protein locus:2013718;,locus:2040879; AT1G29530,AT2G34310 NA NA NA NA NA NA NA NA ENOG411E76W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E76T ZFP2 Q39261 ZFP2_ARATH Zinc finger protein 2 (AtZFP2) FUNCTION: Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. MISCELLANEOUS: Plants over-expressing ZFP2 fail in the abscission of floral organs (sepals, petals and stamens) after anthesis. {ECO:0000269|PubMed:18192438}. 16956 Zinc finger protein 2 (AtZFP2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of floral organ abscission [GO:0060862]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}. locus:2174547; AT5G57520 zinc finger protein Os09g0431750 protein,Os09g0430600 protein,Os08g0555700 protein,Os09g0429766 protein (Fragment) Q69MJ5,Q69NB4,Q6Z0T3,A0A0N7KQU6 Q69MJ5_ORYSJ,Q69NB4_ORYSJ,Q6Z0T3_ORYSJ,A0A0N7KQU6_ORYSJ Os09g0431750 OSJNBa0016E03.47 OSJNBa0039E17.11 OSNPB_090431750,Os09g0430600 OsJ_29454 OSJNBa0016E03.15 OSNPB_090430600,Os08g0555700 OJ1150_A11.6 OSNPB_080555700 P0439B07.21,Os09g0429766 OSNPB_090429766 ENOG411E76U Q9FN13 Q9FN13_ARATH At5g67390 (Gb|AAF67766.1) (Glycosyltransferase-like protein) (Uncharacterized protein At5g67390) 20467 At5g67390 (Gb|AAF67766.1) (Glycosyltransferase-like protein) (Uncharacterized protein At5g67390) transferase activity [GO:0016740] locus:2158217; AT5G67390 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E76R Q8LD83 Q8LD83_ARATH At1g49245 (Prefoldin chaperone subunit family protein) 8462 At1g49245 (Prefoldin chaperone subunit family protein) prefoldin complex [GO:0016272]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:505006175; AT1G49245 Prefoldin subunit Os07g0452700 protein (Fragment),Os07g0452700 protein A0A0P0X5J1,A0A0P0X5Q4 A0A0P0X5J1_ORYSJ,A0A0P0X5Q4_ORYSJ Os07g0452700 OSNPB_070452700 ENOG411E76S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E76P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0372300 protein,Os07g0574600 protein,Os07g0574550 protein Q5ZCY3,A0A0P0X7U0,A0A0N7KNQ5 Q5ZCY3_ORYSJ,A0A0P0X7U0_ORYSJ,A0A0N7KNQ5_ORYSJ B1039D07.21 Os01g0372300 OSNPB_010372300,Os07g0574600 OSNPB_070574600,Os07g0574550 OSNPB_070574550 ENOG411E76Q Q9SGI5,Q0WMJ7 Q9SGI5_ARATH,Q0WMJ7_ARATH F28J7.19 protein (Uncharacterized protein At3g01860) (Uncharacterized protein At3g01860/F28J7_19),Uncharacterized protein At3g01860 18341,24943 F28J7.19 protein (Uncharacterized protein At3g01860) (Uncharacterized protein At3g01860/F28J7_19),Uncharacterized protein At3g01860 response to cadmium ion [GO:0046686] locus:2082284; AT3G01860 NA NA NA NA NA NA NA NA ENOG411E76M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E76J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif family protein Os12g0127800 protein (cDNA, clone: J080034P09, full insert sequence),Os11g0131100 protein B7F9H4,Q0IUW5 B7F9H4_ORYSJ,Q0IUW5_ORYSJ Os12g0127800 OSNPB_120127800,Os11g0131100 OSNPB_110131100 ENOG411E76K F4JZL0,A0A1P8BFN8,F4JZK9,A0A1P8BFP9,F4JZL1 F4JZL0_ARATH,A0A1P8BFN8_ARATH,F4JZK9_ARATH,A0A1P8BFP9_ARATH,F4JZL1_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein 16094,16448,19388,19110,16828 RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723],nucleic acid binding [GO:0003676] locus:2179624; AT5G19030 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E76I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E76G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E76D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0944200 protein (Fragment),Os05g0123900 protein A0A0P0VCV4,A0A0P0WHI5 A0A0P0VCV4_ORYSJ,A0A0P0WHI5_ORYSJ Os01g0944200 OSNPB_010944200,Os05g0123900 OSNPB_050123900 ENOG411E76E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: P4Hc NA NA NA NA NA NA NA ENOG411E76B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411E76C Q9FYR1 Q9FYR1_ARATH Gb|AAD20160.1 11798 Gb|AAD20160.1 locus:2150376; AT5G35110 NA NA NA NA NA NA NA NA ENOG411E76A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411E79J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0414500 protein (Fragment) A0A0N7KPU9 A0A0N7KPU9_ORYSJ Os08g0414500 OSNPB_080414500 ENOG411E90Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E077 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation H( ) antiporter NA NA NA NA NA NA NA ENOG411E94I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os10g0511250 protein,Os10g0511200 protein A0A0P0XWS4,A0A0P0XX49 A0A0P0XWS4_ORYSJ,A0A0P0XX49_ORYSJ Os10g0511250 OSNPB_100511250,Os10g0511200 OSNPB_100511200 ENOG411DXM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0105900 protein Q8L4N7 Q8L4N7_ORYSJ P0617C02.121 B1317D11.116 P0446F04.147 Os07g0105900 OSNPB_070105900 ENOG411EIM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIM8 Q9LF59 Q9LF59_ARATH At5g17650 (Glycine/proline-rich protein) 18535 At5g17650 (Glycine/proline-rich protein) locus:2151401; AT5G17650 NA NA NA NA NA NA NA NA ENOG411EIMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SPOC domain containing 1 NA NA NA NA NA NA NA ENOG411DYZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os03g0119700 protein (Fragment) Q0DVP3,A0A0P0VSA5 Q0DVP3_ORYSJ,A0A0P0VSA5_ORYSJ Os03g0119700 OSNPB_030119700 ENOG411DYZK IDD12 O22759,A0A1P8B4I0 IDD12_ARATH,A0A1P8B4I0_ARATH Protein indeterminate-domain 12,Indeterminate(ID)-domain 12 FUNCTION: Probable transcription factor. {ECO:0000305}. 44513,44759 Protein indeterminate-domain 12,Indeterminate(ID)-domain 12 DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] locus:2132397; AT4G02670 zinc finger protein NA NA NA NA NA NA NA ENOG411DYZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjC domain hydroxylase Os03g0430400 protein (Fragment),Os02g0828900 protein (Putative DNA-binding protein PD3, chloroplast) Q0DR01,Q6K7N9,Q6K7P0 Q0DR01_ORYSJ,Q6K7N9_ORYSJ,Q6K7P0_ORYSJ Os03g0430400 Os03g0430400 OSNPB_030430400,P0452F04.49-2 Os02g0828900 OJ1124_D06.2-2 OSNPB_020828900,P0452F04.49-1 Os02g0828900 OJ1124_D06.2-1 OSNPB_020828900 ENOG411DYZI BRXL2,BRXL3 Q8GYL9,Q5HZ09 BRXL2_ARATH,BRXL3_ARATH Protein Brevis radix-like 2 (AtBRXL2),Protein Brevis radix-like 3 (AtBRXL3) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16514016}. No visible root phenotype. 41863,41991 Protein Brevis radix-like 2 (AtBRXL2),Protein Brevis radix-like 3 (AtBRXL3) nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:16514016}. locus:2088212;,locus:2014345; AT3G14000,AT1G54180 protein BREVIS RADIX-like NA NA NA NA NA NA NA ENOG411DYZH IPUT1 Q8GWB7 GUX6_ARATH Inositol phosphorylceramide glucuronosyltransferase 1 (EC 2.4.1.17) (Glycogenin-like protein 6) (Plant glycogenin-like starch initiation protein 6) DISRUPTION PHENOTYPE: Defect in transmission of mutated alleles through the male gametophyte (e.g. pollen). {ECO:0000269|PubMed:25122154}. FUNCTION: Mediates the transfer of glucuronic acid (GlcA) from UDP-GlcA to glycosyl inositol phosphorylceramides (GIPCs). The formation of GIPCs sphingolipids seems essential for pollen function. {ECO:0000269|PubMed:25122154}. ARA:AT5G18480-MONOMER; R-ATH-5357572;R-ATH-6798695;R-ATH-70221; 2.4.1.17 60011 Inositol phosphorylceramide glucuronosyltransferase 1 (EC 2.4.1.17) (Glycogenin-like protein 6) (Plant glycogenin-like starch initiation protein 6) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; glucuronosyltransferase activity [GO:0015020]; metal ion binding [GO:0046872]; sphingolipid alpha-glucuronosyltransferase activity [GO:1990482]; ceramide biosynthetic process [GO:0046513] DEVELOPMENTAL STAGE: Expressed throughout pollen development. {ECO:0000269|PubMed:25122154}. TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems and siliques. {ECO:0000269|PubMed:25122154}. locus:2146173; AT5G18480 Glycosyl transferase family 8 Os02g0624400 protein (Putative glycogenin 1),Os02g0624400 protein (Fragment),Os04g0517400 protein (Fragment) Q6K1S5,A0A0P0VLV1,A0A0P0WCQ3 Q6K1S5_ORYSJ,A0A0P0VLV1_ORYSJ,A0A0P0WCQ3_ORYSJ Os02g0624400 Os02g0624400 B1215B07.21 OsJ_07584 OSNPB_020624400,Os02g0624400 OSNPB_020624400,Os04g0517400 OSNPB_040517400 ENOG411DYZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger Os03g0718200 protein (Fragment),Os08g0166400 protein (Fragment) Q0DP37,A0A0P0XCG5 Q0DP37_ORYSJ,A0A0P0XCG5_ORYSJ Os03g0718200 OSNPB_030718200,Os08g0166400 OSNPB_080166400 ENOG411DYZD DDR4 F4IDY7,A0A1P8ARH9,A0A1P8ARG8 DDR4_ARATH,A0A1P8ARH9_ARATH,A0A1P8ARG8_ARATH DDT domain-containing protein DDR4 (DDT-related protein 4),DDT domain superfamily FUNCTION: Probable transcription regulator. {ECO:0000305|PubMed:23691993}. 86250,86451,86964 DDT domain-containing protein DDR4 (DDT-related protein 4),DDT domain superfamily nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2011261; AT1G18950 Inherit from KOG: aminoacyl-tRNA synthetase Os07g0193600 protein (Fragment) Q0D802 Q0D802_ORYSJ Os07g0193600 Os07g0193600 OSNPB_070193600 ENOG411DYZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic porin Os01g0276200 protein (Fragment) A0A0P0V1K5 A0A0P0V1K5_ORYSJ Os01g0276200 OSNPB_010276200 ENOG411DYZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os03g0757500 protein (Putative glucosyltransferase) (UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed) (cDNA clone:J023003I23, full insert sequence),Glucosyl transferase, putative, expressed (Os03g0757600 protein) (Putative glucosyltransferase) (cDNA clone:J033087P16, full insert sequence),Os03g0757600 protein Q9AUV3,Q9AUV4,A0A0P0W3B6 Q9AUV3_ORYSJ,Q9AUV4_ORYSJ,A0A0P0W3B6_ORYSJ Os03g0757500 LOC_Os03g55040 Os03g0757500 OsJ_12651 OSJNBa0040E01.15 OSNPB_030757500,LOC_Os03g55050 Os03g0757600 OsJ_12652 OSJNBa0040E01.14 OSNPB_030757600,Os03g0757600 OSNPB_030757600 ENOG411DYZZ MNJ8.11,MNL12.6 Q9LFC4,Q5S4V1,Q5Q0C9,Q9FHT3,F4K4N0 Q9LFC4_ARATH,Q5S4V1_ARATH,Q5Q0C9_ARATH,Q9FHT3_ARATH,F4K4N0_ARATH Uncharacterized protein F7J8_100,Uncharacterized protein,Emb|CAB69840.1 56940,38590,35074,54295,56964 Uncharacterized protein F7J8_100,Uncharacterized protein,Emb|CAB69840.1 locus:2150034;,locus:2095294;,locus:2095304;,locus:2169110;,locus:2169298; AT5G01120,AT3G09110,AT3G09120,AT5G37320,AT5G43240 Protein of unknown function (DUF674) Os04g0594500 protein,Os04g0594700 protein A0A0P0WE75,A0A0P0WEA2 A0A0P0WE75_ORYSJ,A0A0P0WEA2_ORYSJ Os04g0594500 OSNPB_040594500,Os04g0594700 OSNPB_040594700 ENOG411DYZY MZN1.13 Q9LUY6,A0A1P8BB01 Q9LUY6_ARATH,A0A1P8BB01_ARATH At5g58750 (Induced upon wounding stress-like protein) (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein ARA:GQT-2026-MONOMER; 44501,43725 At5g58750 (Induced upon wounding stress-like protein) (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein locus:2178793; AT5G58750 NA NA NA NA NA NA NA NA ENOG411DYZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor protein kinase Os11g0448000 protein A0A0P0Y1X0 A0A0P0Y1X0_ORYSJ Os11g0448000 OSNPB_110448000 ENOG411DYZW AMSH2 Q6NKP9 AMSH2_ARATH AMSH-like ubiquitin thioesterase 2 (EC 3.4.19.-) (Deubiquitinating enzyme AMSH2) FUNCTION: Zinc metalloprotease that cleaves 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. {ECO:0000250}. R-ATH-5689901; 3.4.19.- 24939 AMSH-like ubiquitin thioesterase 2 (EC 3.4.19.-) (Deubiquitinating enzyme AMSH2) metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; protein K48-linked deubiquitination [GO:0071108]; protein K63-linked deubiquitination [GO:0070536] locus:2019903; AT1G10600 AMSH-like ubiquitin thiolesterase Os01g0661500 protein (Fragment) Q0JKN5 Q0JKN5_ORYSJ Os01g0661500 Os01g0661500 OSNPB_010661500 ENOG411DYZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heat stress transcription factor Heat stress transcription factor A-4d (Heat stress transcription factor 10) (rHsf10) (Heat stress transcription factor 15) (OsHsf-15) (Protein SPOTTED LEAF 7) Q93VB5 HFA4D_ORYSJ HSFA4D HSF10 HSF15 SP17 SPL7 Os05g0530400 LOC_Os05g45410 OJ1131_E09.10 OsJ_018517 OsJ_19305 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DYZU SUVR3 Q9SRV2 SUVR3_ARATH Histone-lysine N-methyltransferase SUVR3 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 20) (Suppressor of variegation 3-9-related protein 3) (Su(var)3-9-related protein 3) FUNCTION: Histone methyltransferase. {ECO:0000250}. 2.1.1.43 38773 Histone-lysine N-methyltransferase SUVR3 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 20) (Suppressor of variegation 3-9-related protein 3) (Su(var)3-9-related protein 3) chromosome [GO:0005694]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872] locus:2079369; AT3G03750 Histone-lysine n-methyltransferase Os01g0772150 protein A0A0P0V8S0 A0A0P0V8S0_ORYSJ Os01g0772150 OSNPB_010772150 ENOG411DYZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_CA Os01g0364100 protein (Putative wall-associated kinase 4),Os04g0372000 protein,Os01g0364800 protein (Fragment) Q9ARW4,B9FER4,A0A0P0V313 Q9ARW4_ORYSJ,B9FER4_ORYSJ,A0A0P0V313_ORYSJ P0503E05.16 Os01g0364100 OSNPB_010364100,Os04g0372000 OsJ_14473 OSNPB_040372000,Os01g0364800 OSNPB_010364800 ENOG411DYZS PMP22 Q9ZS51 PMP22_ARATH Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein) FUNCTION: May be involved in the metabolism of reactive oxygen species. {ECO:0000250}. 21719 Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein) integral component of peroxisomal membrane [GO:0005779] DEVELOPMENTAL STAGE: Accumulates after seeds imbibition (at protein level). {ECO:0000269|PubMed:10318708}. TISSUE SPECIFICITY: Ubiquitously expressed, higher levels in flowers and green siliques (at protein level). {ECO:0000269|PubMed:10318708}. locus:2137124; AT4G04470 Peroxisomal membrane protein Os02g0226000 protein (Putative peroxisomal membrane protein 22 kDa) (cDNA clone:J033108J17, full insert sequence) Q6H6J7 Q6H6J7_ORYSJ Os02g0226000 Os02g0226000 OsJ_05949 OSNPB_020226000 P0495C02.18 ENOG411DYZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family Os10g0197700 protein A0A0P0XSK0 A0A0P0XSK0_ORYSJ Os10g0197700 OSNPB_100197700 ENOG411DYZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain Embryonic abundant protein-like (Os01g0716500 protein) (cDNA clone:J033040A11, full insert sequence) Q8S1M1 Q8S1M1_ORYSJ Os01g0716500 OsJ_03255 OSNPB_010716500 P0683B11.14 ENOG411DYZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0225200 protein A0A0P0Y8A9 A0A0P0Y8A9_ORYSJ Os12g0225200 OSNPB_120225200 ENOG411DYZ9 Q9C7D7 CNIH1_ARATH Protein cornichon homolog 1 17368 Protein cornichon homolog 1 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2082199; AT3G12180 protein cornichon homolog Cornichon protein, expressed (Os12g0506400 protein) (cDNA clone:006-201-E03, full insert sequence) Q2QQ55 Q2QQ55_ORYSJ LOC_Os12g32180 Os12g0506400 OSNPB_120506400 ENOG411DYZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2828) Os09g0499400 protein Q0J0T4 Q0J0T4_ORYSJ Os09g0499400 OSNPB_090499400 ENOG411DYZ6 O64624 PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940, chloroplastic 92238 Pentatricopeptide repeat-containing protein At2g18940, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2044430; AT2G18940 Pentatricopeptide repeat-containing protein Os05g0275000 protein (cDNA clone:J013094C24, full insert sequence) Q6ATD8 Q6ATD8_ORYSJ Os05g0275000 Os05g0275000 OSJNBa0018H09.7 OSNPB_050275000 ENOG411DYZ4 Q9LKU8,Q9M316,Q9LKV3 PP401_ARATH,PP292_ARATH,Q9LKV3_ARATH Pentatricopeptide repeat-containing protein At5g28460,Pentatricopeptide repeat-containing protein At3g61520, mitochondrial,F21B23.6 protein (Pentatricopeptide repeat (PPR) superfamily protein) 86966,86906,82853 Pentatricopeptide repeat-containing protein At5g28460,Pentatricopeptide repeat-containing protein At3g61520, mitochondrial,F21B23.6 protein (Pentatricopeptide repeat (PPR) superfamily protein) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2146554;,locus:2082832;,locus:2146549; AT5G28460,AT3G61520,AT5G28370 Pentatricopeptide repeat-containing protein Os06g0249500 protein A0A0P0WUY2 A0A0P0WUY2_ORYSJ Os06g0249500 OSNPB_060249500 ENOG411DYZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DYZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dentin sialophosphoprotein-like (Os06g0670100 protein) (cDNA clone:J033097P03, full insert sequence) Q655R5 Q655R5_ORYSJ Os06g0670100 Os06g0670100 OSNPB_060670100 P0686E06.36 ENOG411DYZ0 Q0WVA1,F4ITT3 Q0WVA1_ARATH,F4ITT3_ARATH Lycopene beta/epsilon cyclase protein (Uncharacterized protein At2g32640),Lycopene beta/epsilon cyclase protein 64610,42308 Lycopene beta/epsilon cyclase protein (Uncharacterized protein At2g32640),Lycopene beta/epsilon cyclase protein chloroplast [GO:0009507]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:2046422; AT2G32640 Inherit from NOG: fad dependent oxidoreductase Glycine/D-amino acid oxidases-like (Os08g0422000 protein) (cDNA clone:J013096B06, full insert sequence),Os08g0422000 protein (Fragment) Q7EYS3,A0A0P0XG21 Q7EYS3_ORYSJ,A0A0P0XG21_ORYSJ Os08g0422000 Os08g0422000 OsJ_27354 OSJNBa0077M12.118 OSNPB_080422000,Os08g0422000 OSNPB_080422000 ENOG411E74V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0751400 protein Q943G0 Q943G0_ORYSJ Os01g0751400 OSNPB_010751400 P0046E05.28 P0435B05.9 ENOG411E3DW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alba Expressed protein (Os03g0166000 protein) (cDNA clone:J023127O11, full insert sequence) Q10RA9 Q10RA9_ORYSJ LOC_Os03g06980 Os03g0166000 OSNPB_030166000 ENOG411EGXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Binding-protein-dependent transport system inner membrane component NA NA NA NA NA NA NA ENOG411E45A MQN23.20 Q9FJP0 Q9FJP0_ARATH Transmembrane protein (Uncharacterized protein At5g65250) 33217 Transmembrane protein (Uncharacterized protein At5g65250) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021] locus:2171865; AT5G65250 NA Os08g0484800 protein A0A0P0XH93 A0A0P0XH93_ORYSJ Os08g0484800 OSNPB_080484800 ENOG411E45B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0102500 protein (Fragment) A0A0P0WH61,A0A0P0WGV4 A0A0P0WH61_ORYSJ,A0A0P0WGV4_ORYSJ Os05g0102500 OSNPB_050102500 ENOG411E45C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0311400 protein Q8L5A8 Q8L5A8_ORYSJ Os01g0311400 B1011A07.5 OSNPB_010311400 P0551A11.32 ENOG411E45D AGL23,AGL62,C7A10.770 O80807,Q9FKK2,O23222 AGL23_ARATH,AGL62_ARATH,O23222_ARATH Agamous-like MADS-box protein AGL23,Agamous-like MADS-box protein AGL62,MADS-box protein (MADS-box protein AGL40) (MADS-box transcription factor family protein) (Putative MADS-box protein) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:18346189}. arrest in embryo sac development; albino due to absence of chloroplast Female gametophyte defective; Albino embryos; Seeds do not germinate without exogenous sucrose-L. Colombo-2008 FUNCTION: Probable transcription factor that controls female gametophyte (megagametogenesis) development and chloroplast biogenesis during embryo development. {ECO:0000269|PubMed:18346189}.,FUNCTION: Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. MISCELLANEOUS: Plants lacking AGL62 show a premature endosperm cellularization and a seed-lethal phenotype. 25337,34588,28470 Agamous-like MADS-box protein AGL23,Agamous-like MADS-box protein AGL62,MADS-box protein (MADS-box protein AGL40) (MADS-box transcription factor family protein) (Putative MADS-box protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chloroplast organization [GO:0009658]; embryo sac development [GO:0009553]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; endosperm development [GO:0009960]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of auxin polar transport [GO:2000012]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During embryo development, expressed in the functional megaspore until maturity of the embryo sac. After fertilization, expressed in the embryo and endosperm until the early torpedo stage. Not expressed in mature embryo. {ECO:0000269|PubMed:18346189}.,DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. locus:2206320;,locus:2175188;,locus:2115420; AT1G65360,AT5G60440,AT4G36590 MADS-box protein NA NA NA NA NA NA NA ENOG411E45E PYM Q9LPZ4 PYM1_ARATH Partner of Y14 and mago (AtPYM) FUNCTION: Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmark for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as an EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs (By similarity). Can increase in vitro the expression from reporter constructs that contain leader introns required for the expression of different genes. In association with MAGO and PYM, participates in intron-mediated enhancement of gene expression (PubMed:21676911). {ECO:0000250|UniProtKB:Q9BRP8, ECO:0000269|PubMed:21676911}. 22588 Partner of Y14 and mago (AtPYM) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; RNA binding [GO:0003723]; mRNA transport [GO:0051028]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; positive regulation of gene expression [GO:0010628]; regulation of translation [GO:0006417] TISSUE SPECIFICITY: Expressed in root and shoot meristems, cotyledons, vascular tissues of leaves, receptacle of flowers and siliques, and pollen grains. {ECO:0000269|PubMed:21676911}. locus:2200116; AT1G11400 partner of Expressed protein (Os03g0262100 protein) Q10NR2 Q10NR2_ORYSJ Os03g0262100 LOC_Os03g15560 Os03g0262100 OsJ_10219 OSNPB_030262100 ENOG411E45F PFD6 Q2HIK4 Q2HIK4_ARATH At1g29990 (Prefoldin 6) Seedlings exhibit root swelling when grown in the presence of 100 nM oryzalin and have a 25% reduction in hypocotyl length. Reduced cell size is due to defects in the microtubules. Microtubules in the root elongation zone remain disorganized. Also affects epidermal cells which have abnormal division planes. Short hypocotyl in the dark; Sensitive to oryzalin (microtubule-disrupting herbicide)-C. Somerville-2008 14856 At1g29990 (Prefoldin 6) cytoplasm [GO:0005737]; cytosol [GO:0005829]; prefoldin complex [GO:0016272]; chaperone binding [GO:0051087]; unfolded protein binding [GO:0051082]; chaperone-mediated protein complex assembly [GO:0051131]; cortical microtubule organization [GO:0043622]; protein folding [GO:0006457] locus:2198289; AT1G29990 Prefoldin subunit Os02g0246300 protein Q0E2E9 Q0E2E9_ORYSJ Os02g0246300 Os02g0246300 OSNPB_020246300 ENOG411E45H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os05g0362300 protein (cDNA clone:J033070O22, full insert sequence),Os05g0362500 protein (cDNA clone:J033029I23, full insert sequence) Q60E83,Q60E82 Q60E83_ORYSJ,Q60E82_ORYSJ Os05g0362300 Os05g0362300 OsJ_18239 OSNPB_050362300 P0692D12.12,Os05g0362500 Os05g0362500 OSNPB_050362500 P0692D12.13 ENOG411E45J SAH7 Q9SZY5 Q9SZY5_ARATH Allergen-like protein BRSn20 (Pollen Ole e 1 allergen and extensin family protein) (SAH7 protein) (Uncharacterized protein At4g08685) 17666 Allergen-like protein BRSn20 (Pollen Ole e 1 allergen and extensin family protein) (SAH7 protein) (Uncharacterized protein At4g08685) locus:505006434; AT4G08685 Pollen-specific protein Os10g0371000 protein (Pollen proteins Ole e I family protein, expressed) (Putataive pollen specific protein C13) (Putative Pollen specific protein C13) Q8RU50 Q8RU50_ORYSJ OJ1208D02.12 OJA1208D02.3 Os10g0371000 LOC_Os10g22590 OsJ_31276 OSNPB_100371000 ENOG411E45K MED21 C0LU16 MED21_ARATH Mediator of RNA polymerase II transcription subunit 21 (Mediator complex subunit 21) (RNAPII complex component SRB7) DISRUPTION PHENOTYPE: Embryonic lethal. {ECO:0000269|PubMed:19286969}. Segregates 25% aborted embryos. Null: No homozygous mutant plants recovered; Knockdown: Susceptible to necrotrophic fungi-T. Mengiste-2009 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for embryo development and defense against necrotrophic fungal pathogens. 15041 Mediator of RNA polymerase II transcription subunit 21 (Mediator complex subunit 21) (RNAPII complex component SRB7) mediator complex [GO:0016592]; polar nucleus [GO:0043078]; RNA polymerase II transcription cofactor activity [GO:0001104]; defense response to fungus [GO:0050832]; defense response to fungus, incompatible interaction [GO:0009817]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2138957; AT4G04780 Mediator of RNA polymerase II transcription subunit Os08g0135600 protein A0A0N7KP87 A0A0N7KP87_ORYSJ Os08g0135600 OSNPB_080135600 ENOG411E45N AIG2LC,AIG2LD A2RVS4,A8MRP2,A0A1P8B6R7,F4IPN4,F4IPN3 AIGLC_ARATH,AIGLD_ARATH,A0A1P8B6R7_ARATH,F4IPN4_ARATH,F4IPN3_ARATH AIG2-like protein C (EC 2.3.2.-) (Avirulence-induced gene 2-like protein C) (Putative gamma-glutamylcyclotransferase),AIG2-like protein D (EC 2.3.2.-) (Avirulence-induced gene 2-like protein D) (Putative gamma-glutamylcyclotransferase),AIG2-like (Avirulence induced gene) family protein FUNCTION: Putative gamma-glutamylcyclotransferase. {ECO:0000250|UniProtKB:O75223}. 2.3.2.- 20123,17484,20341,17156,17057 AIG2-like protein C (EC 2.3.2.-) (Avirulence-induced gene 2-like protein C) (Putative gamma-glutamylcyclotransferase),AIG2-like protein D (EC 2.3.2.-) (Avirulence-induced gene 2-like protein D) (Putative gamma-glutamylcyclotransferase),AIG2-like (Avirulence induced gene) family protein transferase activity, transferring acyl groups [GO:0016746] DEVELOPMENTAL STAGE: Expressed constitutively during the life cycle. {ECO:0000305|PubMed:18214976}. TISSUE SPECIFICITY: Expressed in flowers, leaves, stems and roots. {ECO:0000305|PubMed:18214976}.,TISSUE SPECIFICITY: Expressed mainly in leaves. {ECO:0000305|PubMed:18214976}. locus:2128121;,locus:2061022; AT4G31310,AT2G24390 AIG2-like AvrRpt2-induced protein 2-like (Os02g0141000 protein) (cDNA clone:J023056J21, full insert sequence) Q6Z2W4 Q6Z2W4_ORYSJ Os02g0141000 OJ1679_B08.28 OsJ_05330 OSNPB_020141000 ENOG411E45P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA salt tolerance-like protein At1g78600 Os12g0209200 protein (Salt tolerance-like protein At1g78600, putative, expressed) (cDNA clone:J013117D12, full insert sequence) Q2QW41 Q2QW41_ORYSJ LOC_Os12g10660 Os12g0209200 OSNPB_120209200 ENOG411E45Q Q8VYN8,F4JSI0 Q8VYN8_ARATH,F4JSI0_ARATH Uncharacterized conserved protein (UCP012943) (Uncharacterized protein At4g25170),Uncharacterized conserved protein (UCP012943) 37034,38791 Uncharacterized conserved protein (UCP012943) (Uncharacterized protein At4g25170),Uncharacterized conserved protein (UCP012943) locus:2122619; AT4G25170 NA Os02g0657700 protein (cDNA clone:002-143-G04, full insert sequence) Q6H689 Q6H689_ORYSJ Os02g0657700 Os02g0657700 OJ1112_F09.8 OSNPB_020657700 P0519E06.38 ENOG411E45R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E45S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain containing protein, expressed (Os03g0341000 protein) (cDNA clone:002-182-G01, full insert sequence),Os07g0674800 protein (Fragment) Q10LN8,A0A0P0XA37 Q10LN8_ORYSJ,A0A0P0XA37_ORYSJ Os03g0341000 LOC_Os03g22170 Os03g0341000 OSNPB_030341000,Os07g0674800 OSNPB_070674800 ENOG411E45T TIFY4B,TIFY4A,PPD1,PEAPOD 2 Q8GY55,Q7XA73,A0A1P8B4V3,A0A1P8B4T7,A0A1P8B7N6,F4JIE4 TIF4B_ARATH,TIF4A_ARATH,A0A1P8B4V3_ARATH,A0A1P8B4T7_ARATH,A0A1P8B7N6_ARATH,F4JIE4_ARATH Protein TIFY 4B (Protein PEAPOD 2),Protein TIFY 4A (Protein PEAPOD 1),TIFY domain/Divergent CCT motif family protein DISRUPTION PHENOTYPE: Plants lacking both TIFY4A and TIFY4B have larger leaves and cotyledon laminae, a dome-shaped leaf curvature and shortened siliques. {ECO:0000269|PubMed:16916932}. Weak semidominant ppd silique phenotype i.e. similar to deltappd mutant and leaf curvature phenotype.,Mutant plants had larger leaf and cotyledon laminae and leaves had a dome-shaped positive Gaussian curvature in contrast to flat WT leaves. Mutant siliques were shorter flattened and wider at the top and had undulations in the seedpod walls compared with the smooth narrow cylindrical shape of WT siliques. Branching of trichomes on mutant leaves was reduced to two rather than the three to four branches of WT. The larger lamina area observed in the leaves and cotyledons of mutant plants was due to increases in both length and width. For cotyledons this increase in growth occurred without affecting shape or flatness. However mature leaves in mutant plants were more oval in shape because of an altered lamina length-to-width ratio and could not be flattened without introducing cuts in the margin because of their positive curvature. Curved leaves; Abnormal silique width; Heterozygotes: Intermediate phenotype-D. White-2006 FUNCTION: Regulates the arrest of dispersed meristematic cells during lamina development. {ECO:0000269|PubMed:16916932}. MISCELLANEOUS: Redundant with TIFY 4B/PPD2. 34849,34423,24366,27891,36086,28983 Protein TIFY 4B (Protein PEAPOD 2),Protein TIFY 4A (Protein PEAPOD 1),TIFY domain/Divergent CCT motif family protein nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; leaf development [GO:0048366]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; response to wounding [GO:0009611],nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; leaf development [GO:0048366]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of cell proliferation [GO:0042127]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; response to wounding [GO:0009611] DEVELOPMENTAL STAGE: First detected at the tip of developing leaf, followed by a tip-to-base progression of the expression. {ECO:0000269|PubMed:16916932}. locus:2130155;,locus:505006464; AT4G14720,AT4G14713 leaf development NA NA NA NA NA NA NA ENOG411E45U Q945Q5,A0A1P8AXK6 Q945Q5_ARATH,A0A1P8AXK6_ARATH At2g30700/T11J7.9 (Bacterial trigger factor) (Expressed protein),Bacterial trigger factor 22260,15004 At2g30700/T11J7.9 (Bacterial trigger factor) (Expressed protein),Bacterial trigger factor chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; protein folding [GO:0006457]; protein transport [GO:0015031],protein folding [GO:0006457]; protein transport [GO:0015031] locus:505006279; AT2G30695 Bacterial trigger factor protein (TF) Os09g0515400 protein A0A0P0XP17 A0A0P0XP17_ORYSJ Os09g0515400 OSNPB_090515400 ENOG411E45W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: bon association protein Os09g0526500 protein Q652B1 Q652B1_ORYSJ Os09g0526500 Os09g0526500 OJ1439_F07.15 OsJ_30074 OSNPB_090526500 ENOG411E45X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIC-type PPIASE domain Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (Fragment) Q0J9A6 Q0J9A6_ORYSJ Os04g0663800 Os04g0663800 OSNPB_040663800 ENOG411E45Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protein of unknown function (DUF1645) Os05g0568600 protein Q6AUN7 Q6AUN7_ORYSJ Os05g0568600 Os05g0568600 OJ1781_H11.21 OSJNBa0040E06.3 OSNPB_050568600 ENOG411E450 Q8LCY2,A0A1R7T3F1 ISAM2_ARATH,A0A1R7T3F1_ARATH Iron-sulfur assembly protein IscA-like 2, mitochondrial,Iron-sulfur cluster biosynthesis family protein FUNCTION: Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly (By similarity). {ECO:0000250}. R-ATH-1362409; 17414,13056 Iron-sulfur assembly protein IscA-like 2, mitochondrial,Iron-sulfur cluster biosynthesis family protein mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 4 iron, 4 sulfur cluster binding [GO:0051539]; iron ion binding [GO:0005506]; structural molecule activity [GO:0005198]; iron-sulfur cluster assembly [GO:0016226]; protein maturation [GO:0051604]; protein maturation by iron-sulfur cluster transfer [GO:0097428] locus:505006581; AT5G03905 iron-sulfur assembly protein IscA-like 2 Os08g0369700 protein,Os08g0363800 protein A3BSI8,A0A0P0XEX2 A3BSI8_ORYSJ,A0A0P0XEX2_ORYSJ Os08g0369700 Os08g0369700 OsJ_27093 OSNPB_080369700,Os08g0363800 OSNPB_080363800 ENOG411E451 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os09g0546100 protein (Putative auxin induced protein) (cDNA, clone: J065036L02, full insert sequence),Os09g0546200 protein (Putative auxin induced protein) Q651Q9,Q651Q8 Q651Q9_ORYSJ,Q651Q8_ORYSJ Os09g0546100 OsJ_30211 OSJNBa0038K02.7 OSNPB_090546100,Os09g0546200 OsJ_30212 OSJNBa0038K02.8 OSNPB_090546200 ENOG411E452 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0398600 protein (Putative ring-H2 zinc finger protein) (Zinc finger, C3HC4 type family protein, expressed),Os02g0586700 protein Q84MU8,A0A0P0VL07 Q84MU8_ORYSJ,A0A0P0VL07_ORYSJ Os03g0398600 LOC_Os03g28080 Os03g28080 OSNPB_030398600,Os02g0586700 OSNPB_020586700 ENOG411E453 MYC6.9 Q5Q0A4 Q5Q0A4_ARATH CCT motif family protein 35080 CCT motif family protein nucleus [GO:0005634]; regulation of flower development [GO:0009909]; response to light stimulus [GO:0009416] locus:2177911; AT5G41380 CCT motif NA NA NA NA NA NA NA ENOG411E454 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os05g0115100 protein (Unknow protein) (cDNA clone:002-100-A05, full insert sequence) Q65XA8 Q65XA8_ORYSJ OJ1654_B10.11-1 Os05g0115100 OsJ_16886 OSNPB_050115100 P0496H07.1 ENOG411E455 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os01g0882000 protein A0A0P0VB80 A0A0P0VB80_ORYSJ Os01g0882000 OSNPB_010882000 ENOG411E456 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0160100 protein (PHD-finger family protein, expressed) Q2RA95 Q2RA95_ORYSJ LOC_Os11g06130 Os11g0160100 OSNPB_110160100 ENOG411E457 F4JJP0,F4JJN9 F4JJP0_ARATH,F4JJN9_ARATH Heavy metal transport/detoxification superfamily protein 18133,38279 Heavy metal transport/detoxification superfamily protein metal ion binding [GO:0046872]; metal ion transport [GO:0030001],cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2137767; AT4G27590 Heavy-metal-associated domain OSJNBa0088A01.3 protein (Os04g0581800 protein) Q7XUE2 Q7XUE2_ORYSJ Os04g0581800 OsJ_15903 OSJNBa0088A01.3 OSNPB_040581800 ENOG411E458 Q8LG11 Q8LG11_ARATH Proline-rich cell wall protein-like (Ubiquitin-associated/translation elongation factor EF1B protein) 24276 Proline-rich cell wall protein-like (Ubiquitin-associated/translation elongation factor EF1B protein) ESCRT I complex [GO:0000813]; translation elongation factor activity [GO:0003746]; ubiquitin binding [GO:0043130]; ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043162] locus:2154237; AT5G53330 Proline-rich cell wall Os06g0160400 protein (Proline-rich cell wall protein-like) (cDNA clone:J033104I02, full insert sequence) Q5WA93 Q5WA93_ORYSJ Os06g0160400 OsJ_20210 OSNPB_060160400 P0681F10.7 ENOG411E459 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E8JH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8JA Q8L7F0 Q8L7F0_ARATH At5g49525 (Transmembrane protein) 8950 At5g49525 (Transmembrane protein) integral component of membrane [GO:0016021] locus:1005716786; AT5G49525 NA NA NA NA NA NA NA NA ENOG411E8JC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8JD TAC1 Q9SR34 TAC1_ARATH Transcriptional regulator TAC1 (Protein TELOMERASE ACTIVATOR1) DISRUPTION PHENOTYPE: Altered response to auxin, but persistance of the telomerase activity. {ECO:0000269|PubMed:15486103}. FUNCTION: Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}. 19331 Transcriptional regulator TAC1 (Protein TELOMERASE ACTIVATOR1) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; positive regulation of telomerase activity [GO:0051973]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269|PubMed:15486103}. locus:2083574; AT3G09290 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E8JG KNU Q9FFX4 KNU_ARATH Zinc finger protein KNUCKLES FUNCTION: May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}. 18049 Zinc finger protein KNUCKLES nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; floral meristem determinacy [GO:0010582]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: First expressed in developing carpel primordia, and later in stamens and ovules of flower buds. {ECO:0000269|PubMed:15240552}. locus:2159088; AT5G14010 zinc finger NA NA NA NA NA NA NA ENOG411E8JF CLE27 Q9LUA1 CLE27_ARATH CLAVATA3/ESR (CLE)-related protein 27 [Cleaved into: CLE27p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16902140}. 10286 CLAVATA3/ESR (CLE)-related protein 27 [Cleaved into: CLE27p] extracellular space [GO:0005615]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in apex, and, to a lower extent, in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:12602871}. locus:505006378; AT3G25905 NA NA NA NA NA NA NA NA ENOG411E8JX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0576400 protein Q69JW4 Q69JW4_ORYSJ Os02g0576400 Os02g0576400 B1342F01.8 OsJ_07243 OSNPB_020576400 P0703B01.29 ENOG411E8JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0493200 protein A0A0P0WP25 A0A0P0WP25_ORYSJ Os05g0493200 OSNPB_050493200 ENOG411E8JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ParB NA NA NA NA NA NA NA ENOG411E8JS F19F18.90 Q9SZF3 Q9SZF3_ARATH Uncharacterized protein AT4g37600 (Uncharacterized protein F19F18.90) 10277 Uncharacterized protein AT4g37600 (Uncharacterized protein F19F18.90) locus:4010713934; AT4G37608 NA NA NA NA NA NA NA NA ENOG411E8JR Q9LIK4 Q9LIK4_ARATH Uncharacterized protein 18287 Uncharacterized protein hydrolase activity, acting on ester bonds [GO:0016788] Plant transposon protein NA NA NA NA NA NA NA ENOG411E38G FES1 Q84VG7 FES1_ARATH Protein FRIGIDA-ESSENTIAL 1 (Zinc finger CCCH domain-containing protein 27) (AtC3H27) FUNCTION: Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}. 64376 Protein FRIGIDA-ESSENTIAL 1 (Zinc finger CCCH domain-containing protein 27) (AtC3H27) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; cell differentiation [GO:0030154]; flower development [GO:0009908]; positive regulation of vernalization response [GO:0010220] TISSUE SPECIFICITY: Expressed in root and shoot apices and vasculature. {ECO:0000269|PubMed:16291783}. locus:504955962; AT2G33835 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411E8JW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8J0 O64820,Q6NLU9 O64820_ARATH,Q6NLU9_ARATH At2g23110 (Late embryogenesis abundant protein, group 6) (Similar to late embryogenesis abundant proteins),At2g33690 (Late embryogenesis abundant protein, group 6) 9713,7945 At2g23110 (Late embryogenesis abundant protein, group 6) (Similar to late embryogenesis abundant proteins),At2g33690 (Late embryogenesis abundant protein, group 6) cytosol [GO:0005829] locus:2045379;,locus:2057661; AT2G23110,AT2G33690 Late embryogenesis abundant protein 18 Os09g0482300 protein (Os09g0482550 protein) (Fragment) A0A0P0XN98 A0A0P0XN98_ORYSJ Os09g0482300 Os09g0482550 OSNPB_090482300 OSNPB_090482550 ENOG411E8J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0247200 protein) (cDNA clone:J033079O20, full insert sequence) Q10P49 Q10P49_ORYSJ Os03g0247200 LOC_Os03g14300 Os03g0247200 OSNPB_030247200 ENOG411E8J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8J7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0176700 protein,Os11g0176600 protein,Os11g0176500 protein A0A0P0XZX7,A0A0P0XZL9,A0A0P0XZF7 A0A0P0XZX7_ORYSJ,A0A0P0XZL9_ORYSJ,A0A0P0XZF7_ORYSJ Os11g0176700 OSNPB_110176700,Os11g0176600 OSNPB_110176600,Os11g0176500 OSNPB_110176500 ENOG411E8J6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Expressed protein (Os03g0341600 protein) (cDNA clone:J013110O11, full insert sequence),Expressed protein (Os03g0342100 protein) (cDNA clone:001-122-G12, full insert sequence) Q10LN4,Q10LN2 Q10LN4_ORYSJ,Q10LN2_ORYSJ Os03g0341600 LOC_Os03g22210 Os03g0341600 OSNPB_030341600,LOC_Os03g22230 Os03g0342100 OsJ_29243 OSNPB_030342100 ENOG411EJCG Q9FG18 Q9FG18_ARATH Gb|AAF63169.1 (SWAP (Suppressor-of-White-APricot)/surp domain-containing protein) 76697 Gb|AAF63169.1 (SWAP (Suppressor-of-White-APricot)/surp domain-containing protein) catalytic step 2 spliceosome [GO:0071013]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; RNA binding [GO:0003723]; mRNA 3'-splice site recognition [GO:0000389]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381] locus:2144123; AT5G06520 Surp module NA NA NA NA NA NA NA ENOG411E38B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os02g0686500 protein A0A0P0VNI4 A0A0P0VNI4_ORYSJ Os02g0686500 OSNPB_020686500 ENOG411ECA3 F8J2_90 Q3EBM1,Q9SJR4,Q8L9S7,Q9LF99,Q2V422 Q3EBM1_ARATH,Q9SJR4_ARATH,Q8L9S7_ARATH,Q9LF99_ARATH,Q2V422_ARATH Transcriptional activator (DUF662) (Uncharacterized protein At2g36410),Expressed protein (Transcriptional activator (DUF662)) (Uncharacterized protein At2g36410),Transcriptional activator (DUF662),Transcriptional activator (DUF662) (Uncharacterized protein At3g52920) (Uncharacterized protein F8J2_90) 21959,22347,20984,20668,17032 Transcriptional activator (DUF662) (Uncharacterized protein At2g36410),Expressed protein (Transcriptional activator (DUF662)) (Uncharacterized protein At2g36410),Transcriptional activator (DUF662),Transcriptional activator (DUF662) (Uncharacterized protein At3g52920) (Uncharacterized protein F8J2_90) plasma membrane [GO:0005886] locus:2044883;,locus:2085231; AT2G36410,AT3G52920 Pfam:DUF662 NA NA NA NA NA NA NA ENOG411ECA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os11g0295900 protein A0A0N7KSS8 A0A0N7KSS8_ORYSJ Os11g0295900 OSNPB_110295900 ENOG411ECA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium Bile acid symporter family NA NA NA NA NA NA NA ENOG411ECA7 F4IPI5 F4IPI5_ARATH Pathogenesis-related thaumatin superfamily protein 26478 Pathogenesis-related thaumatin superfamily protein locus:2827805; AT2G17860 THN NA NA NA NA NA NA NA ENOG411ECA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411ECA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ECA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain NA NA NA NA NA NA NA ENOG411ECAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cellulose synthase-like protein G1-like NA NA NA NA NA NA NA ENOG411ECAE PP2A10,CF9 Q9SY57,Q9SLU2 P2A10_ARATH,Q9SLU2_ARATH Protein PHLOEM PROTEIN 2-LIKE A10 (AtPP2-A10),CF9 protein (Carbohydrate-binding protein) (T30E16.3) (Uncharacterized protein CF9) 45518,42611 Protein PHLOEM PROTEIN 2-LIKE A10 (AtPP2-A10),CF9 protein (Carbohydrate-binding protein) (T30E16.3) (Uncharacterized protein CF9) integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246],integral component of membrane [GO:0016021] locus:2012803;,locus:2202842; AT1G10150,AT1G59510 NA NA NA NA NA NA NA NA ENOG411ECAD MYC6.3 Q9FN68 Q9FN68_ARATH Stress response NST1-like protein 56969 Stress response NST1-like protein locus:2177851; AT5G41320 NA NA NA NA NA NA NA NA ENOG411ECAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECAJ ACT2 A0A1P8AY15,F4J8V9 A0A1P8AY15_ARATH,F4J8V9_ARATH Actin family protein,Actin 2 Mutants have abnormal root hairs that are stunted bulging or may be branched. The orientation of microtubules is abnormal.,Plants are dwarf and reach only 15% of the height of wild type. Roots lack root hairs- the initiate but do not develop further than a bulge. Leaves are small with reduced surface area and fewer lobes. Leaf trichomes are abnormal and contain fewer branches. Also defects in flower morphology reduced fertility abnormal inflorescence structure and abnormal silique development.,Lacks root hairs.Root hairs initiate but do not develop further. Short root hairs-B. Keller-2002 35865,41232 Actin family protein,Actin 2 ATP binding [GO:0005524] AT3G18780 ACTIN NA NA NA NA NA NA NA ENOG411ECAI Q8GY51,A0A1P8B8V9 Q8GY51_ARATH,A0A1P8B8V9_ARATH At4g15730 (CW-type Zinc Finger) (Uncharacterized protein At4g15730/dl3905c),CW-type Zinc Finger 116697,114672 At4g15730 (CW-type Zinc Finger) (Uncharacterized protein At4g15730/dl3905c),CW-type Zinc Finger plasmodesma [GO:0009506]; zinc ion binding [GO:0008270],zinc ion binding [GO:0008270] locus:2130659; AT4G15730 CW-type Zinc Finger NA NA NA NA NA NA NA ENOG411ECAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411ECAM DGR1 Q9SSB7 Q9SSB7_ARATH At1g80240 (F18B13.30 protein) 40226 At1g80240 (F18B13.30 protein) plant-type cell wall [GO:0009505] locus:2016324; AT1G80240 Protein of unknown function (DUF642) NA NA NA NA NA NA NA ENOG411ECAS T4C21_190 O22136,Q9LZY5 O22136_ARATH,Q9LZY5_ARATH Ankyrin repeat/KH domain protein (DUF1442) (At2g45360) (Uncharacterized protein At2g45360),Uncharacterized protein T4C21_190 23791,23833 Ankyrin repeat/KH domain protein (DUF1442) (At2g45360) (Uncharacterized protein At2g45360),Uncharacterized protein T4C21_190 locus:2050842;,locus:2101911; AT2G45360,AT3G60780 Protein of unknown function (DUF1442) NA NA NA NA NA NA NA ENOG411ECAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411ECAQ GGPP6 O22043,Q9LJY2,A0A1I9LME8 GGPP6_ARATH,GGPPA_ARATH,A0A1I9LME8_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial (GGPP synthase 6) (GGPS6) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 6) (Dimethylallyltranstransferase 6) (EC 2.5.1.1) (Farnesyl diphosphate synthase 6) (Farnesyltranstransferase 6) (EC 2.5.1.29) (Geranyltranstransferase 6) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 10, mitochondrial (GGPP synthase 10) (GGPS10) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 10) (Dimethylallyltranstransferase 10) (EC 2.5.1.1) (Farnesyl diphosphate synthase 10) (Farnesyltranstransferase 10) (EC 2.5.1.29) (Geranyltranstransferase 10) (EC 2.5.1.10),Terpenoid synthases superfamily protein FUNCTION: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate.,FUNCTION: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. {ECO:0000250}. PATHWAY: Isoprenoid biosynthesis; farnesyl diphosphate biosynthesis; farnesyl diphosphate from geranyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranyl diphosphate biosynthesis; geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranylgeranyl diphosphate biosynthesis; geranylgeranyl diphosphate from farnesyl diphosphate and isopentenyl diphosphate: step 1/1. MetaCyc:AT1G49530-MONOMER;,ARA:AT3G20160-MONOMER; 2.5.1.-; 2.5.1.1; 2.5.1.29; 2.5.1.10 36886,38087,34982 Geranylgeranyl pyrophosphate synthase 6, mitochondrial (GGPP synthase 6) (GGPS6) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 6) (Dimethylallyltranstransferase 6) (EC 2.5.1.1) (Farnesyl diphosphate synthase 6) (Farnesyltranstransferase 6) (EC 2.5.1.29) (Geranyltranstransferase 6) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 10, mitochondrial (GGPP synthase 10) (GGPS10) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 10) (Dimethylallyltranstransferase 10) (EC 2.5.1.1) (Farnesyl diphosphate synthase 10) (Farnesyltranstransferase 10) (EC 2.5.1.29) (Geranyltranstransferase 10) (EC 2.5.1.10),Terpenoid synthases superfamily protein mitochondrion [GO:0005739]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386]; isoprenoid biosynthetic process [GO:0008299],intracellular [GO:0005622]; mitochondrion [GO:0005739]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386]; isoprenoid biosynthetic process [GO:0008299],transferase activity [GO:0016740]; isoprenoid biosynthetic process [GO:0008299] locus:2010182;,locus:2087550; AT1G49530,AT3G20160 Polyprenyl synthetase NA NA NA NA NA NA NA ENOG411ECAP Q9FL98,A0A1P8BFA4,B3H4D0 Q9FL98_ARATH,A0A1P8BFA4_ARATH,B3H4D0_ARATH Glutathione S-transferase family protein ARA:AT5G44990-MONOMER; 40613,31160,31133 Glutathione S-transferase family protein cytoplasm [GO:0005737]; glutathione transferase activity [GO:0004364],transferase activity [GO:0016740] locus:2155377; AT5G44990 Inherit from KOG: glutathione Stransferase NA NA NA NA NA NA NA ENOG411ECAW Q3E8E3,Q9LH93,Q9MBG7,Q9LH92,A0A1I9LQX1,A0A1I9LPV7,A0A1I9LQX0,A0A1I9LQW9,A0A1I9LQW8 Q3E8E3_ARATH,Q9LH93_ARATH,Q9MBG7_ARATH,Q9LH92_ARATH,A0A1I9LQX1_ARATH,A0A1I9LPV7_ARATH,A0A1I9LQX0_ARATH,A0A1I9LQW9_ARATH,A0A1I9LQW8_ARATH Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 11217,47872,48835,47786,44831,46294,44041,48046,46467 Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) locus:504954996;,locus:2098438;,locus:2087032;,locus:2098448; AT5G48575,AT3G28810,AT3G28980,AT3G28820 Genomic DNA chromosome 3 NA NA NA NA NA NA NA ENOG411ECAV PUP20,PUP19 Q9SX90,Q9SX93 PUP20_ARATH,PUP19_ARATH Putative purine permease 20 (AtPUP20),Putative purine permease 19 (AtPUP19) 43366,43334 Putative purine permease 20 (AtPUP20),Putative purine permease 19 (AtPUP19) integral component of membrane [GO:0016021]; transporter activity [GO:0005215] AT1G47590,AT1G47603 Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411ECAU SBP3 Q9LK38,A0A1I9LTQ7 SEBP3_ARATH,A0A1I9LTQ7_ARATH Selenium-binding protein 3 53359,50117 Selenium-binding protein 3 selenium binding [GO:0008430] TISSUE SPECIFICITY: Expressed in young seedlings, mostly in roots. {ECO:0000269|PubMed:18354042}. locus:2095183; AT3G23800 56kDa selenium binding protein (SBP56) NA NA NA NA NA NA NA ENOG411ECAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like NA NA NA NA NA NA NA ENOG411ECAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SynN Os02g0209900 protein (Putative syntaxin-related protein Nt-syr1) Q6H8D0 Q6H8D0_ORYSJ Os02g0209900 Os02g0209900 OJ1006_A02.31 OsJ_05857 OSNPB_020209900 ENOG411ECAY FAD4,FAD4L2,FAD4L1 Q9SZ42,O81006,O04584 FAD4_ARATH,FD4L2_ARATH,FD4L1_ARATH Fatty acid desaturase 4, chloroplastic (EC 1.14.19.43) (Fatty acid desaturase A),Fatty acid desaturase 4-like 2, chloroplastic (FAD4-L2) (EC 1.14.19.-),Fatty acid desaturase 4-like 1, chloroplastic (FAD4-L1) (EC 1.14.19.-) DISRUPTION PHENOTYPE: No visible phenotype, but missing a chloroplast-specific phosphatidylglycerol molecular species that carries a delta 3-trans-hexadecenoic acid in the sn-2 position of its core glyceryl moiety. {ECO:0000269|PubMed:17796728, ECO:0000269|PubMed:19682287}. Abnormal fatty acid composition; Elevated palmitic acid levels-C. Benning-2009 FUNCTION: Fatty acid desaturase involved in the production of chloroplast-specific phosphatidylglycerol molecular species containing 16:1(3E). Catalyzes the formation of a trans double bond introduced close to the carboxyl group of palmitic acid, which is specifically esterified to the sn-2 glyceryl carbon of phosphatidylglycerol. {ECO:0000269|PubMed:17796728, ECO:0000269|PubMed:19682287}.,FUNCTION: Fatty acid desaturase involved in the production of chloroplast-specific phosphatidylglycerol molecular species. Catalyzes the formation of a trans double bond introduced close to the carboxyl group of palmitic acid, which is specifically esterified to the sn-2 glyceryl carbon of phosphatidylglycerol (By similarity). {ECO:0000250}. PATHWAY: Lipid metabolism; fatty acid metabolism. {ECO:0000269|PubMed:17796728}.,PATHWAY: Lipid metabolism; fatty acid metabolism. 1.14.19.43,1.14.19.- 36380,31505,32954 Fatty acid desaturase 4, chloroplastic (EC 1.14.19.43) (Fatty acid desaturase A),Fatty acid desaturase 4-like 2, chloroplastic (FAD4-L2) (EC 1.14.19.-),Fatty acid desaturase 4-like 1, chloroplastic (FAD4-L1) (EC 1.14.19.-) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity [GO:0052637]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; phosphatidylglycerol metabolic process [GO:0046471]; protein polyubiquitination [GO:0000209]; response to karrikin [GO:0080167]; ubiquitin-dependent ERAD pathway [GO:0030433]; unsaturated fatty acid biosynthetic process [GO:0006636],chloroplast membrane [GO:0031969]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; fatty acid metabolic process [GO:0006631]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2116352;,locus:2059149;,locus:2018022; AT4G27030,AT2G22890,AT1G62190 Kua-ubiquitin conjugating enzyme hybrid localisation domain NA NA NA NA NA NA NA ENOG411ECAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411DQY7 UTR6 Q8GY97,Q9C5H6 CSTR2_ARATH,CSTR3_ARATH CMP-sialic acid transporter 2 (CMP-SA-Tr 2) (CMP-Sia-Tr 2),CMP-sialic acid transporter 3 (CMP-SA-Tr 3) (CMP-Sia-Tr 3) (UDP-galactose/UDP-glucose transporter 6) (AtUTr6) FUNCTION: Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi. {ECO:0000250}. 44963,44541 CMP-sialic acid transporter 2 (CMP-SA-Tr 2) (CMP-Sia-Tr 2),CMP-sialic acid transporter 3 (CMP-SA-Tr 3) (CMP-Sia-Tr 3) (UDP-galactose/UDP-glucose transporter 6) (AtUTr6) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; sialic acid transmembrane transporter activity [GO:0015136]; sugar:proton symporter activity [GO:0005351]; sialic acid transport [GO:0015739],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; sialic acid transmembrane transporter activity [GO:0015136]; sugar:proton symporter activity [GO:0005351]; sialic acid transport [GO:0015739] locus:2040976;,locus:2081292; AT2G43240,AT3G59360 transporter CMP-sialic acid transporter 4 (CMP-SA-Tr 4) (CMP-Sia-Tr 4) (CMP-sialic acid transporter-like protein 4),CMP-sialic acid transporter 5 (CMP-SA-Tr 5) (CMP-Sia-Tr 5) (CMP-sialic acid transporter-like protein 5),Os04g0490600 protein Q7X7C4,Q6K8S7,Q0JC58 CSTR4_ORYSJ,CSTR5_ORYSJ,Q0JC58_ORYSJ CSTLP4 LOC_Os04g41320 OSJNBa0076N16.10 OSJNBa0084K20.12,CSTLP5 Os02g0604300 LOC_Os02g39200 OJ1058_F07.2,Os04g0490600 Os04g0490600 OSNPB_040490600 FUNCTION: Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi. May transport important nucleotide sugars such as CMP-Kdo (2-keto-3-deoxy-D-manno-octulosonic acid) in physiological conditions. {ECO:0000250|UniProtKB:Q654D9}. ENOG411DQY5 Q9C6L2,F4ICH3,A0A1P8ANA1 Q9C6L2_ARATH,F4ICH3_ARATH,A0A1P8ANA1_ARATH At1g25420/F2J7_16 (Regulator of Vps4 activity in the MVB pathway protein) (Uncharacterized protein F2J7.16),Regulator of Vps4 activity in the MVB pathway protein R-ATH-6798695; 35813,27904,32851 At1g25420/F2J7_16 (Regulator of Vps4 activity in the MVB pathway protein) (Uncharacterized protein F2J7.16),Regulator of Vps4 activity in the MVB pathway protein protein transport [GO:0015031] locus:2031250; AT1G25420 Regulator of Vps4 activity in the MVB pathway Os01g0687700 protein (cDNA clone:006-208-H01, full insert sequence) (cDNA clone:J033071E20, full insert sequence) Q5N7L3 Q5N7L3_ORYSJ Os01g0687700 OSNPB_010687700 P0519D04.24 ENOG411DQYZ PUX1 Q9LK22 PUX1_ARATH Plant UBX domain-containing protein 1 (PUX1) (CDC48-interacting UBX-domain protein 1) DISRUPTION PHENOTYPE: Accelerated growth of various plant organs including roots and inflorescence shoots. {ECO:0000269|PubMed:15498773}. FUNCTION: Regulates CDC48A by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. {ECO:0000269|PubMed:15498773, ECO:0000269|PubMed:17190830, ECO:0000269|Ref.7}. 28502 Plant UBX domain-containing protein 1 (PUX1) (CDC48-interacting UBX-domain protein 1) cytoplasm [GO:0005737]; ATPase binding [GO:0051117]; organ growth [GO:0035265]; protein complex disassembly [GO:0043241] locus:2086493; AT3G27310 tether containing UBX domain for Os04g0485200 protein (cDNA clone:J023001P21, full insert sequence) Q0JC92 Q0JC92_ORYSJ Os04g0485200 Os04g0485200 OSNPB_040485200 ENOG411DQYX Q9LXF4 PP384_ARATH Pentatricopeptide repeat-containing protein At5g15280, mitochondrial 139609 Pentatricopeptide repeat-containing protein At5g15280, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2150971; AT5G15280 Pentatricopeptide repeat-containing protein Os03g0168400 protein (Fragment) A0A0P0VTK8 A0A0P0VTK8_ORYSJ Os03g0168400 OSNPB_030168400 ENOG411DQYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENT domain Os01g0611200 protein A0A0N7KDB1 A0A0N7KDB1_ORYSJ Os01g0611200 OSNPB_010611200 ENOG411DQYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein BREAST CANCER SUSCEPTIBILITY 1 homolog NA NA NA NA NA NA NA ENOG411DWPW T11I11.190 Q9SW40,Q9SLF1,A0A1P8B299 Q9SW40_ARATH,Q9SLF1_ARATH,A0A1P8B299_ARATH Major facilitator superfamily protein (Uncharacterized protein AT4g34950) (Uncharacterized protein T11I11.190),At2g16660/T24I21.7 (Major facilitator superfamily protein) (Nodulin-like protein) (Putative nodulin protein),Major facilitator superfamily protein 60862,58977,42545 Major facilitator superfamily protein (Uncharacterized protein AT4g34950) (Uncharacterized protein T11I11.190),At2g16660/T24I21.7 (Major facilitator superfamily protein) (Nodulin-like protein) (Putative nodulin protein),Major facilitator superfamily protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; response to karrikin [GO:0080167] locus:2116855;,locus:2059829; AT4G34950,AT2G16660 nodulin family Os09g0536700 protein (cDNA clone:J023012O05, full insert sequence),Os09g0536700 protein (Putative nodulin-like protein) (cDNA clone:J013111E22, full insert sequence) B7EKL1,Q69JG4 B7EKL1_ORYSJ,Q69JG4_ORYSJ Os09g0536700 OSNPB_090536700,P0229B10.1-1 P0569E11.23-1 Os09g0536700 OSNPB_090536700 ENOG411DWPV CYP19-3 Q38867 CP19C_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-3 (PPIase CYP19-3) (EC 5.2.1.8) (Cyclophilin of 19 kDa 3) (Cyclophilin-4) (Rotamase cyclophilin-2) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. R-ATH-6798695; 5.2.1.8 18921 Peptidyl-prolyl cis-trans isomerase CYP19-3 (PPIase CYP19-3) (EC 5.2.1.8) (Cyclophilin of 19 kDa 3) (Cyclophilin-4) (Rotamase cyclophilin-2) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; cyclosporin A binding [GO:0016018]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; response to cadmium ion [GO:0046686]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Ubiquitous, with highest levels in flowers and lowest levels in roots. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:9426607}. locus:2078451; AT3G56070 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q651B0 Q651B0_ORYSJ Os09g0571400 B1331F11.9 OsJ_30428 OSNPB_090571400 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DWPU BPM3 O22286,A0A1P8AZW8 BPM3_ARATH,A0A1P8AZW8_ARATH BTB/POZ and MATH domain-containing protein 3 (Protein BTB-POZ AND MATH DOMAIN 3) (AtBPM3),BTB/POZ/MATH-domains containing protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000269|PubMed:15618422}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5632684; 44890,37906 BTB/POZ and MATH domain-containing protein 3 (Protein BTB-POZ AND MATH DOMAIN 3) (AtBPM3),BTB/POZ/MATH-domains containing protein cytosol [GO:0005829]; nucleus [GO:0005634]; identical protein binding [GO:0042802]; cellular response to salt stress [GO:0071472]; protein ubiquitination [GO:0016567]; regulation of protein ubiquitination [GO:0031396]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15618422, ECO:0000269|PubMed:19843165}. locus:2063953; AT2G39760 BTB POZ and MATH domain-containing protein Os07g0101400 protein (Putative speckle-type POZ protein) (cDNA clone:J023031F07, full insert sequence) Q69L94 Q69L94_ORYSJ Os07g0101400 B1026C12.20 OSNPB_070101400 ENOG411DWPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Os05g0135400 protein Q0DKY6 Q0DKY6_ORYSJ Os05g0135400 Os05g0135400 OSNPB_050135400 ENOG411DWPS BLH6,BLH1 O65685,Q9SJ56 BLH6_ARATH,BLH1_ARATH BEL1-like homeodomain protein 6 (BEL1-like protein 6),BEL1-like homeodomain protein 1 (BEL1-like protein 1) (Protein EMBRYO SAC DEVELOPMENT ARREST 29) Altered response to continuous far-red light and deep canopy shadelight-J. Casal-2009 59609,74463 BEL1-like homeodomain protein 6 (BEL1-like protein 6),BEL1-like homeodomain protein 1 (BEL1-like protein 1) (Protein EMBRYO SAC DEVELOPMENT ARREST 29) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; polar nucleus fusion [GO:0010197]; response to abscisic acid [GO:0009737]; response to continuous far red light stimulus by the high-irradiance response system [GO:0010201]; response to symbiotic fungus [GO:0009610]; transcription, DNA-templated [GO:0006351] locus:2139614;,locus:2039250; AT4G34610,AT2G35940 BEL1-like homeodomain protein Associated with HOX family protein, expressed (Os12g0636200 protein) (cDNA clone:J023054P21, full insert sequence),Associated with HOX family protein, expressed (Os12g0160500 protein),Associated with HOX family protein, expressed (Os03g0680800 protein) (Putative homeodomain protein) (cDNA clone:J013124I05, full insert sequence),Associated with HOX family protein, expressed (Homeodomain protein) (Os03g0680800 protein) (Putative homeodomain protein) (cDNA clone:J023038C04, full insert sequence),Os11g0158832 protein,Os12g0636200 protein (Fragment),Os03g0680800 protein,Os12g0636200 protein,Os03g0680800 protein (Fragment),Os11g0158600 protein Q2QLM6,Q2QXE1,Q5KQP1,Q9AYD9,Q2QXE2,A0A0P0XZL7,A0A0P0YCU2,A0A0P0W1W8,A0A0P0YCY6,A0A0P0W271,A0A0P0XZ22 Q2QLM6_ORYSJ,Q2QXE1_ORYSJ,Q5KQP1_ORYSJ,Q9AYD9_ORYSJ,Q2QXE2_ORYSJ,A0A0P0XZL7_ORYSJ,A0A0P0YCU2_ORYSJ,A0A0P0W1W8_ORYSJ,A0A0P0YCY6_ORYSJ,A0A0P0W271_ORYSJ,A0A0P0XZ22_ORYSJ LOC_Os12g43950 Os12g0636200 OsJ_36996 OSNPB_120636200,Os12g0160500 LOC_Os12g06340 OSNPB_120160500,Os03g0680800 LOC_Os03g47740 Os03g0680800 Os03g47740 OsJ_12119 OSNPB_030680800,Os03g0680800 LOC_Os03g47740 Os03g47740 OSNPB_030680800,Os11g0158832 OSNPB_110158832,Os12g0636200 OSNPB_120636200,Os03g0680800 OSNPB_030680800,Os11g0158600 OSNPB_110158600 ENOG411DWPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os10g0147250 protein (Putative salt-inducible protein) Q94HS0 Q94HS0_ORYSJ Os10g0147250 OsJ_30721 OSJNBa0030B02.16 OSNPB_100147250 ENOG411DWPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os02g0275200 protein (Putative galactoside 2-alpha-L-fucosyltransferase) (cDNA clone:J023106B19, full insert sequence),Os02g0275200 protein (Fragment) Q6K7S6,A0A0N7KF32 Q6K7S6_ORYSJ,A0A0N7KF32_ORYSJ Os02g0275200 Os02g0275200 OsJ_06230 OSNPB_020275200 P0017G06.12 P0413A11.42,Os02g0275200 OSNPB_020275200 ENOG411DWPP NIK1,NIK2 Q9LFS4,Q8RY65,F4JA15,F4JA17 NIK1_ARATH,NIK2_ARATH,F4JA15_ARATH,F4JA17_ARATH Protein NSP-INTERACTING KINASE 1 (AtNIK1) (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase NIK1),Protein NSP-INTERACTING KINASE 2 (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase NIK2),NSP-interacting kinase 2 DISRUPTION PHENOTYPE: Enhanced susceptibility to geminivirus infection. {ECO:0000269|PubMed:15489295, ECO:0000269|PubMed:19492062}. Susceptible to viral infection-E. Fontes-2009 FUNCTION: Involved in defense response to geminivirus and begomovirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro (PubMed:15489295, PubMed:18789471, PubMed:19112492, PubMed:19492062, PubMed:25707794). Activation of NIK1 downregulates cytosolic translation (PubMed:25707794). {ECO:0000269|PubMed:15489295, ECO:0000269|PubMed:18789471, ECO:0000269|PubMed:19112492, ECO:0000269|PubMed:19492062, ECO:0000269|PubMed:25707794}.,FUNCTION: Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro. {ECO:0000250, ECO:0000269|PubMed:18789471}. 2.7.11.1 70546,70606,71966,70796 Protein NSP-INTERACTING KINASE 1 (AtNIK1) (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase NIK1),Protein NSP-INTERACTING KINASE 2 (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase NIK2),NSP-interacting kinase 2 cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleoplasm [GO:0005654]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response to virus [GO:0051607]; negative regulation of multicellular organism growth [GO:0040015]; protein autophosphorylation [GO:0046777]; protein localization to nucleus [GO:0034504]; protein phosphorylation [GO:0006468]; viral process [GO:0016032],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468]; viral process [GO:0016032],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in seedlings, leaves, roots, stems and flowers. {ECO:0000269|PubMed:15489295, ECO:0000269|PubMed:25707794}.,TISSUE SPECIFICITY: Expressed in flowers and roots. {ECO:0000269|PubMed:15489295}. locus:2146102;,locus:2094463; AT5G16000,AT3G25560 NSP-interacting kinase NA NA NA NA NA NA NA ENOG411DWPZ Q9LS97 Q9LS97_ARATH AT3G18790 protein (AT3g18790/MVE11_17) (Pre-mRNA-splicing factor ISY1-like protein) (Uncharacterized protein At3g18790/MVE11_17) R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-72163; 35377 AT3G18790 protein (AT3g18790/MVE11_17) (Pre-mRNA-splicing factor ISY1-like protein) (Uncharacterized protein At3g18790/MVE11_17) catalytic step 1 spliceosome [GO:0071012]; catalytic step 2 spliceosome [GO:0071013]; chloroplast [GO:0009507]; cytosol [GO:0005829]; post-mRNA release spliceosomal complex [GO:0071014]; post-spliceosomal complex [GO:0071020]; Prp19 complex [GO:0000974]; generation of catalytic spliceosome for second transesterification step [GO:0000350]; mRNA 3'-splice site recognition [GO:0000389] locus:2093964; AT3G18790 pre-mRNA-splicing factor ISY1 2 coiled coil domains of eukaryotic origin (31.3 kD)-like protein (Os02g0602500 protein) (cDNA clone:002-107-H03, full insert sequence),Os02g0602500 protein (Fragment) Q6K5F4,A0A0P0VLC4 Q6K5F4_ORYSJ,A0A0P0VLC4_ORYSJ OJ1791_B03.50-2 OJ1669_F01.12-2 Os02g0602500 OsJ_07419 OSNPB_020602500,Os02g0602500 OSNPB_020602500 ENOG411DWPY CAO O22265 SR43C_ARATH Signal recognition particle 43 kDa protein, chloroplastic (Chromo protein SRP43) (CpSRP43) DISRUPTION PHENOTYPE: Plants show a reduced level of the major light-harvesting chlorophyll a/b-binding proteins (LHCPs). {ECO:0000269|PubMed:9878634}. Pale green; Chlorotic-L. Nussaume-1999 FUNCTION: Component of the chloroplast signal recognition particle pathway. Required for post-translational targeting of proteins into the thylakoid membrane but seems to be dispensable for co-translational targeting with a translating ribosome present. May be able to function independently of cpFTSY and FFC/cpSRP54 in targeting LHCPs to the thylakoids. Acts as a highly specific chaperone for LHCPs, preventing aggregation and being able to dissolve aggregates. {ECO:0000269|PubMed:10480939, ECO:0000269|PubMed:15292240, ECO:0000269|PubMed:17513500, ECO:0000269|PubMed:20498370, ECO:0000269|PubMed:9878634}. MISCELLANEOUS: Unlike eukaryotic or prokaryotic signal recognition particle (SRP), the chloroplast SRP from higher plants lacks an SRP-RNA component. It targets both chloroplast-encoded and nucleus-encoded substrates to the thylakoid membrane, post-translationally for the nucleus-encoded proteins and co-translationally for the chloroplast-encoded proteins. 41279 Signal recognition particle 43 kDa protein, chloroplastic (Chromo protein SRP43) (CpSRP43) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; protein complex [GO:0043234]; signal recognition particle, chloroplast targeting [GO:0080085]; signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; disordered domain specific binding [GO:0097718]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; protein binding, bridging [GO:0030674]; protein domain specific binding [GO:0019904]; protein heterotrimerization [GO:0070208]; protein import into chloroplast thylakoid membrane [GO:0045038]; response to high light intensity [GO:0009644] TISSUE SPECIFICITY: Expressed in leaves. Detected in roots. {ECO:0000269|PubMed:16813577, ECO:0000269|PubMed:9878634}. locus:2062046; AT2G47450 signal recognition particle 43 kDa protein Probable signal recognition particle 43 kDa protein, chloroplastic,Os03g0131900 protein (Fragment) Q8LSQ2,A0A0P0VSW3 SR43C_ORYSJ,A0A0P0VSW3_ORYSJ Os03g0131900 LOC_Os03g03990 OJ1004C08.7 OsJ_09298,Os03g0131900 OSNPB_030131900 FUNCTION: Component of the chloroplast signal recognition particle pathway. Targets proteins into the thylakoid membrane (By similarity). {ECO:0000250}. ENOG411DWPX RTH Q9SD42 RTH_ARATH Protein RTE1-HOMOLOG 26161 Protein RTE1-HOMOLOG integral component of membrane [GO:0016021] locus:2080978; AT3G51040 Protein of unknown function (DUF778) Expressed protein (Os03g0799500 protein) (cDNA clone:J023110N04, full insert sequence) Q851Q4 Q851Q4_ORYSJ OSJNBa0052F07.19 LOC_Os03g58520 Os03g0799500 OSNPB_030799500 ENOG411DWPG Q8VZ34,A8MR72 Q8VZ34_ARATH,A8MR72_ARATH Ankyrin repeat family protein (Uncharacterized protein At2g26210),Ankyrin repeat family protein 20324,17688 Ankyrin repeat family protein (Uncharacterized protein At2g26210),Ankyrin repeat family protein intracellular [GO:0005622] locus:2057746; AT2G26210 ANK Os07g0618600 protein,Os07g0618600 protein (Fragment) Q0D4M1,A0A0P0X8Y1 Q0D4M1_ORYSJ,A0A0P0X8Y1_ORYSJ Os07g0618600 Os07g0618600 OsJ_25144 OSNPB_070618600,Os07g0618600 OSNPB_070618600 ENOG411DWPF LAC11 Q8VZA1 LAC11_ARATH Laccase-11 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 11) (Diphenol oxidase 11) (Urishiol oxidase 11) no observable phenotype FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ARA:AT5G03260-MONOMER; 1.10.3.2 61748 Laccase-11 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 11) (Diphenol oxidase 11) (Urishiol oxidase 11) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Ubiquitous and constitutive. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2143563; AT5G03260 laccase-11-like Laccase-2 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 2) (Diphenol oxidase 2) (Urishiol oxidase 2),Os01g0634500 protein (Fragment) Q8RYM9,A0A0P0V5L8 LAC2_ORYSJ,A0A0P0V5L8_ORYSJ LAC2 Os01g0634500 LOC_Os01g44330 OsJ_002637 P0663E10.27,Os01g0634500 OSNPB_010634500 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411DWPE CDC48C Q9SS94,A0A1I9LNC6 CD48C_ARATH,A0A1I9LNC6_ARATH Cell division control protein 48 homolog C (AtCDC48c) (Protein EMBRYO DEFECTIVE 1354),Cell division cycle 48C Embryo defective; Preglobular / Globular-D. Meinke-2002 FUNCTION: Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity). {ECO:0000250}. 90005,91163 Cell division control protein 48 homolog C (AtCDC48c) (Protein EMBRYO DEFECTIVE 1354),Cell division cycle 48C cytoskeleton [GO:0005856]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein transport [GO:0015031],ATP binding [GO:0005524]; cell division [GO:0051301] locus:2084163; AT3G01610 Cell division control protein 48 homolog Os06g0109400 protein (Putative cell survival CED-4-interacting protein MAC-1) Q5VRN1 Q5VRN1_ORYSJ Os06g0109400 OsJ_19854 OSJNBa0004I20.8 OSNPB_060109400 P0514G12.32 ENOG411DWPD TA1 Q9M1K9 ATA1_ARATH Short-chain dehydrogenase reductase ATA1 (EC 1.1.1.-) (Protein TAPETUM 1) (ATA1) (Tasselseed-2 homolog ATA1) FUNCTION: May play a role in tapetum development. {ECO:0000305|PubMed:9351239}. ARA:AT3G42960-MONOMER; R-ATH-77111; 1.1.1.- 28346 Short-chain dehydrogenase reductase ATA1 (EC 1.1.1.-) (Protein TAPETUM 1) (ATA1) (Tasselseed-2 homolog ATA1) oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed specifically in tapetal cells. {ECO:0000269|PubMed:9351239}. locus:2078541; AT3G42960 KR domain NA NA NA NA NA NA NA ENOG411DWPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DWPB GPAT1 Q9SHJ5 GPAT1_ARATH Glycerol-3-phosphate acyltransferase 1 (AtGPAT1) (EC 2.3.1.15) DISRUPTION PHENOTYPE: Plants display a massive pollen development arrest due to a perturbed degeneration of the tapetum, which is associated with altered endoplasmic reticulum profiles and reduced secretion. Defects correlate with several fatty acid composition changes in flower tissues and seeds. However, no significant change in seed oil content is observed. {ECO:0000269|PubMed:12897259}. Reduced fertility due to male sterility. Pollen collapsed and outcompeted by wild type pollen. Phenotype apparent at microspore release stage II. Tapetum differentitation is abnormal which causes a sporophytic defect on microgametogenesis. Reduced fertility; Pollen abortion (does not segregate in heterozygotes)-J. Zou-2003 FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate, an essential step in glycerolipid biosynthesis. Involved in pollen development, by being required for tapetum differentiation and male fertility. In addition to the sporophytic effect, it also exerts a gametophytic effect on pollen performance. {ECO:0000269|PubMed:12897259}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 1/3. 2.3.1.15 66514 Glycerol-3-phosphate acyltransferase 1 (AtGPAT1) (EC 2.3.1.15) integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; glycerol-3-phosphate O-acyltransferase activity [GO:0004366]; phosphatase activity [GO:0016791]; sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity [GO:0102420]; CDP-diacylglycerol biosynthetic process [GO:0016024]; cutin biosynthetic process [GO:0010143]; dephosphorylation [GO:0016311]; pollen sperm cell differentiation [GO:0048235]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Highly expressed in developing siliques and flower buds. Weakly or not expressed in roots, seedlings and leaves. {ECO:0000269|PubMed:12897259}. locus:2009225; AT1G06520 glycerol-3-phosphate acyltransferase NA NA NA NA NA NA NA ENOG411DWPA P4H2,P4H4 F4JAU3,Q8LAN3 P4H2_ARATH,P4H4_ARATH Prolyl 4-hydroxylase 2 (AtP4H-2) (AtP4H2) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 4 (AtP4H4) (EC 1.14.11.2) DISRUPTION PHENOTYPE: Reduced root hair length and content of hydroxyproline in root cell walls. {ECO:0000269|PubMed:21680836}. FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. Possesses high affinity for leucine-rich repeat and proline-rich extensins of root cell walls that are essential for root hair development. Hydroxyprolines define the subsequent O-glycosylation sites by arabinosyltransferases which elongate the O-arabinosides on extensins. Has low affinity for the substrates tested in vitro. {ECO:0000269|PubMed:15528200, ECO:0000269|PubMed:21680836}.,FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. {ECO:0000250|UniProtKB:F4JAU3}. ARA:AT5G18900-MONOMER; 1.14.11.2; 1.14.11.2 33019,33061 Prolyl 4-hydroxylase 2 (AtP4H-2) (AtP4H2) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 4 (AtP4H4) (EC 1.14.11.2) endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656]; peptidyl-proline hydroxylation to 4-hydroxy-L-proline [GO:0018401]; root hair cell development [GO:0080147],cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656] TISSUE SPECIFICITY: Expressed in epidermal root hair cells (trichoblasts). {ECO:0000269|PubMed:21680836}. locus:2081106;,locus:2144960; AT3G06300,AT5G18900 prolyl 4-hydroxylase Os05g0489100 protein (Putative prolyl 4-hydroxylase alpha subunit) (cDNA clone:J033138K17, full insert sequence) Q6AVM9 Q6AVM9_ORYSJ Os05g0489100 Os05g0489100 OJ1119_H02.14 OsJ_11906 OSNPB_050489100 ENOG411DWPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Blind-like (Os01g0722300 protein) (cDNA, clone: J065154C10, full insert sequence) Q5JMA5 Q5JMA5_ORYSJ Os01g0722300 Os01g0722300 OSNPB_010722300 P0022F10.2 P0690B02.29 ENOG411DWPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GLECT Hexosyltransferase (EC 2.4.1.-) A0A0P0YC58 A0A0P0YC58_ORYSJ Os12g0613850 OSNPB_120613850 ENOG411DWPK Q9SL79,Q9LDA9 CAF1P_ARATH,CAF2P_ARATH CRS2-associated factor 1, chloroplastic (Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1),CRS2-associated factor 2, chloroplastic (Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2) DISRUPTION PHENOTYPE: Plants are albinos. {ECO:0000269|PubMed:17071648}. ivory,homozygous are embryo lethal arrested at the globular stage and do not undergo transition to heart stage,small pale green Null: Embryo defective; Transition; Knockdown: Seedling lethal; Pigment defective embryo-A. Barkan-2007 FUNCTION: Required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles. {ECO:0000269|PubMed:17071648}.,FUNCTION: Essential protein required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles. {ECO:0000269|PubMed:17071648}. 79055,63602 CRS2-associated factor 1, chloroplastic (Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1),CRS2-associated factor 2, chloroplastic (Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2) chloroplast stroma [GO:0009570]; intracellular ribonucleoprotein complex [GO:0030529]; RNA binding [GO:0003723]; Group II intron splicing [GO:0000373]; mRNA processing [GO:0006397] locus:2061604;,locus:2028100; AT2G20020,AT1G23400 CRS2-associated factor CRS2-associated factor 2, chloroplastic (Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2),CRS2-associated factor 1, chloroplastic (Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1) Q657G7,Q5VMQ5 CAF2P_ORYSJ,CAF1P_ORYSJ Os01g0323300 LOC_Os01g21990 OSJNBa0011P19.4 P0426D06.47,Os01g0495900 LOC_Os01g31110 OJ1126_G08.1 OsJ_01906 OSJNBa0029L04.25 FUNCTION: Required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles (By similarity). {ECO:0000250}. ENOG411DWPJ Q940R4 ASP63_ARATH Probable aspartyl protease At4g16563 (EC 3.4.23.-) 3.4.23.- 54751 Probable aspartyl protease At4g16563 (EC 3.4.23.-) plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:505006483; AT4G16563 aspartyl protease family protein Os04g0535200 protein (cDNA clone:001-024-B02, full insert sequence) (cDNA clone:002-172-E10, full insert sequence) (cDNA clone:J033044F04, full insert sequence) Q0JBF3 Q0JBF3_ORYSJ Os04g0535200 Os04g0535200 OSNPB_040535200 ENOG411DWPI OPT7 O82485,A0A1P8B5U9 OPT7_ARATH,A0A1P8B5U9_ARATH Oligopeptide transporter 7 (AtOPT7),Oligopeptide transporter 7 FUNCTION: Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. May also transport cadmium complexes. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:15247401}. 86136,62311 Oligopeptide transporter 7 (AtOPT7),Oligopeptide transporter 7 integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; oligopeptide transmembrane transporter activity [GO:0035673]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Not expressed at the embryo stage. {ECO:0000269|PubMed:15247401}. TISSUE SPECIFICITY: Expressed in the major and the first-order veins and in the hydathodes of the leaves. In the roots, expressed in circular zones surrounding lateral root primordia and in some part of the root epidermis. Expressed also in the sepals and the cortical tissues of the stem, but not in the conducting bundles, the petals or the reproductive tissues. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:15247401}. locus:2132736; AT4G10770 oligopeptide transporter Glutathione transporter (Os06g0125500 protein),Os06g0125400 protein (Putative sexual differentiation process protein isp4),Os06g0127700 protein (Putative isp4 protein),Os06g0125500 protein (Fragment) Q7FU78,Q5VS43,Q5VRJ9,A0A0P0WSE3,A0A0P0WRX4 Q7FU78_ORYSJ,Q5VS43_ORYSJ,Q5VRJ9_ORYSJ,A0A0P0WSE3_ORYSJ,A0A0P0WRX4_ORYSJ Os06g0125500 Os06g0125500 OsJ_19953 OSNPB_060125500,P0425F02.26 Os06g0125400 OSNPB_060125400,Os06g0127700 Os06g0127700 OsJ_19965 OSJNBa0038F22.19 OSNPB_060127700 P0425F02.53,Os06g0125500 OSNPB_060125500 ENOG411DWPH MSF19.7 Q5EAE7,F4KBZ2,F4KAN9 Q5EAE7_ARATH,F4KBZ2_ARATH,F4KAN9_ARATH Afadin/alpha-actinin-binding protein (At5g57410) (Uncharacterized protein At5g57410),Afadin/alpha-actinin-binding protein 42659,38208,44640 Afadin/alpha-actinin-binding protein (At5g57410) (Uncharacterized protein At5g57410),Afadin/alpha-actinin-binding protein microtubule associated complex [GO:0005875]; response to cadmium ion [GO:0046686] locus:2172989; AT5G57410 Afadin- and alpha -actinin-Binding Os08g0242900 protein (Putative synovial sarcoma, X breakpoint 2 interacting protein) Q6Z0V1 Q6Z0V1_ORYSJ Os08g0242900 Os08g0242900 OSJNBb0070J06.4 OSNPB_080242900 ENOG411DWP7 Q84WB7 GT645_ARATH Glycosyltransferase family protein 64 protein C5 (GT64 C5) (EC 2.4.1.-) FUNCTION: Probable glycosyltransferase. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT5G04500-MONOMER; 2.4.1.- 86431 Glycosyltransferase family protein 64 protein C5 (GT64 C5) (EC 2.4.1.-) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; transferase activity, transferring glycosyl groups [GO:0016757]; protein glycosylation [GO:0006486] locus:2184347; AT5G04500 Glycosyl transferase family 64 domain Os05g0540000 protein (Putative glycosyltransferase),Expressed protein (Os03g0684500 protein) (Putative exostoses) Q53WK1,Q9AUK5 Q53WK1_ORYSJ,Q9AUK5_ORYSJ Os05g0540000 Os05g0540000 OSJNBa0052K01.21 OSNPB_050540000,Os03g0684500 LOC_Os03g48010 OSJNBb0072E24.4 OSNPB_030684500 ENOG411DWP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon Reticulon-like protein Q656J2 Q656J2_ORYSJ Os06g0503400 OSNPB_060503400 P0564B04.17 ENOG411DWP5 CDKA-1 P24100 CDKA1_ARATH Cyclin-dependent kinase A-1 (CDKA;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cell division control protein 2 homolog A) DISRUPTION PHENOTYPE: Plants display lethal male gametophyte (PubMed:16460514). Impaired stomata formation with arrested guard mother cells (GMC) divisions. Impaired last mitotic division in the male gametophyte, leading to 50 percent of pollen with two gametes. The double mutant flp-1 myb88 displays an enhanced stomatal phenotype with more and larger stomatal clusters. Triple mutants cdka;1 flp-1 myb88 don't have guard cells stacks but accumulates sGCs (PubMed:24687979). {ECO:0000269|PubMed:16460514, ECO:0000269|PubMed:24687979}. Homozygous are lethal. In self-fertilized heterozygous severe seed defects were observed in the mature siliques whereas no obvious defect was observed before the reproductive stage. The mature siliques contain normal and aborted seeds at a 1:1 ratio. Male gametophytic lethal. Microspores normally undergo an asymmetric cell division pollen mitosis I (PMI) to produce bicellular pollen grains. The larger vegetative cell does not divide but the smaller generative cell undergoes mitosis PMII to form the two sperm cells thereby generating tricellular pollen grains. Embryo is arrested at the globular stage most likely because of loss of endosperm development whereas it is arrested at the one- or two-cell stage in presumptive homozygous plants,strongly decreased kinase activity T161D plants showed various developmental defects; strongly reduced in growth. contained embryos that were small and displayed cotyledons that did not fold to one side; exhibited fewer but enlarged cells After germination fewer and smaller leaves were generated by the T161D plants. Sterile phenotype; although all floral organs were present the plants were entirely female- and male-sterile,Reduced fertility failure to transmit through pollen. Pollen development affected at the second mitotic division resulting in pollen with a single generative and vegetative cell. Pollen can germinate and fertilize the egg cell but embryos arrest. Unfertilized endosperm develops. Male gametophyte defective; Bicellular pollen; 50% defective seeds-A. Schnittger-2005 FUNCTION: Involved in the control of the cell cycle. Essential for both G1/S and G2/M (mitosis) phase transitions. Functions in cell morphogenesis as well as cell proliferation. Required for cell division (entry into mitosis) of the generative cell in male gametogenesis. Required to trigger guard mother cells (GMC) symmetric divisions at the late stage of stomatal development, probably via the regulation of G1 to S transition in the cell cycle. Promotes divisions in the guard cells (GCs) after the guard mother cells (GMC) symmetric division when in the presence of CYCD3-2 (PubMed:24687979). {ECO:0000269|PubMed:10929107, ECO:0000269|PubMed:16460514, ECO:0000269|PubMed:17369369, ECO:0000269|PubMed:24687979}. R-ATH-110056;R-ATH-1538133;R-ATH-174184;R-ATH-176408;R-ATH-2299718;R-ATH-2500257;R-ATH-4419969;R-ATH-5693607;R-ATH-6804114;R-ATH-68911;R-ATH-68949;R-ATH-68962;R-ATH-69017;R-ATH-69200;R-ATH-69202;R-ATH-69273;R-ATH-69478;R-ATH-69656;R-ATH-75035; 2.7.11.22; 2.7.11.22; 2.7.11.23 34030 Cyclin-dependent kinase A-1 (CDKA;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cell division control protein 2 homolog A) cortical microtubule, transverse to long axis [GO:0010005]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitotic spindle [GO:0072686]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; preprophase band [GO:0009574]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; asymmetric cell division [GO:0008356]; cytokinesis by cell plate formation [GO:0000911]; DNA endoreduplication [GO:0042023]; DNA repair [GO:0006281]; embryo development ending in seed dormancy [GO:0009793]; gametophyte development [GO:0048229]; guard mother cell cytokinesis [GO:0010235]; guard mother cell differentiation [GO:0010444]; histone phosphorylation [GO:0016572]; microtubule cytoskeleton organization [GO:0000226]; mitotic cell cycle phase transition [GO:0044772]; pollen development [GO:0009555]; positive regulation of cell proliferation [GO:0008284]; regulation of cell cycle G1/S phase transition [GO:1902806]; regulation of gene expression [GO:0010468]; regulation of meiotic nuclear division [GO:0040020]; regulation of mitotic cell cycle [GO:0007346]; response to cold [GO:0009409]; symmetric cell division [GO:0098725] DEVELOPMENTAL STAGE: Expressed throughout the cell cycle. Expressed in actively dividing cells: root and shoot apical meristems, leaf primordia and emerging lateral root meristem. Expressed in light-grown seedlings from 1 up to 7 days after germination with a peak at 2 and 3 days. {ECO:0000269|PubMed:10521519, ECO:0000269|PubMed:8893539}. TISSUE SPECIFICITY: Expressed in roots, stems, flowers and siliques. {ECO:0000269|PubMed:8893539}. locus:2099478; AT3G48750 Cell division control protein 2 Cyclin-dependent kinase A-2 (CDKA;2) (EC 2.7.11.22) (EC 2.7.11.23) (CDC2Os-2) (Cell division control protein 2 homolog 2),Cyclin-dependent kinase A-1 (CDKA;1) (EC 2.7.11.22) (EC 2.7.11.23) (CDC2Os-1) (Cell division control protein 2 homolog 1),Os02g0123100 protein (cDNA clone:002-108-B12, full insert sequence),Os02g0123100 protein (Fragment),Os03g0118400 protein (Fragment) P29619,P29618,B7E9N8,A0A0N7KEL2,A0A0P0VS98 CDKA2_ORYSJ,CDKA1_ORYSJ,B7E9N8_ORYSJ,A0A0N7KEL2_ORYSJ,A0A0P0VS98_ORYSJ CDKA-2 CDC2-2 Os02g0123100 LOC_Os02g03060 P0575F10.10-1 P0575F10.10-2,CDKA-1 CDC2-1 Os03g0118400 LOC_Os03g02680,Os02g0123100 OSNPB_020123100,Os03g0118400 OSNPB_030118400 ENOG411DWP4 MRL7 F4JLC1 MRL7_ARATH Thioredoxin-like fold domain-containing protein MRL7, chloroplastic (Protein EARLY CHLOROPLAST BIOGENESIS 1) (AtECB1) (Protein MESOPHYLL-CELL RNAI LIBRARY LINE 7) (AtMRL7) (Protein SUPPRESSOR OF VARIEGATION 4) DISRUPTION PHENOTYPE: Seedling lethality due to deficiency in chloroplast development. {ECO:0000269|PubMed:21220584, ECO:0000269|PubMed:21515910, ECO:0000269|PubMed:23956074}. Seedling lethal (inferred from pigment defect); Albino embryos-D. Meinke-2011 FUNCTION: Plays an essential role in early steps of chloroplast development (PubMed:21220584, PubMed:21515910, PubMed:23956074, PubMed:24111559). Involved in the regulation of plastid gene expression (PubMed:21515910, PubMed:23956074, PubMed:24111559). May positively regulate plastid-encoded RNA polymerase (PEP) activity through binding to FSD3 and CITRX/TRXZ (PubMed:23956074). Involved in redox-mediated regulation of chloroplast development (PubMed:24132784, PubMed:23956074). Possesses disulfide reductase activity in vitro (PubMed:23956074). Required for the proper function of the plastid transcriptional machinery and protein accumulation in thylakoid membranes. May function as molecular chaperone to ensure proper organization of the nucleoids in chloroplasts (PubMed:24111559). May mediate some aspect of thylakoid structure or function that controls non-photochemical quenching (NPQ) (PubMed:21220584). {ECO:0000269|PubMed:21220584, ECO:0000269|PubMed:21515910, ECO:0000269|PubMed:23956074, ECO:0000269|PubMed:24111559, ECO:0000269|PubMed:24132784}. 38241 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic (Protein EARLY CHLOROPLAST BIOGENESIS 1) (AtECB1) (Protein MESOPHYLL-CELL RNAI LIBRARY LINE 7) (AtMRL7) (Protein SUPPRESSOR OF VARIEGATION 4) chloroplast nucleoid [GO:0042644]; chloroplast organization [GO:0009658]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in leaves, shoots, stems, cauline leaves, flower buds, flowers and siliques. {ECO:0000269|PubMed:21515910}. locus:2139850; AT4G28590 NA Thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic (OsMRL7) Q5QLS7 MRL7_ORYSJ MRL7 Os01g0829000 LOC_Os01g61320 B1088C09.28 P0446G04.1 FUNCTION: Plays an essential role in early steps of chloroplast development. Involved in the regulation of plastid gene expression. Required for the proper function of the plastid transcriptional machinery and protein accumulation in thylakoid membranes. May function as molecular chaperone to ensure proper organization of the nucleoids in chloroplasts. {ECO:0000250|UniProtKB:F4JLC1}. ENOG411DWP3 F4I526 F4I526_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein 67293 Polynucleotidyl transferase, ribonuclease H-like superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2011826; AT1G56310 Pfam:3_5_exonuc Os05g0357100 protein (cDNA clone:J033081J05, full insert sequence) Q5W6Y1 Q5W6Y1_ORYSJ Os05g0357100 OsJ_18206 OSJNBa0036C12.16 OSNPB_050357100 ENOG411DWP2 ISPD P69834 ISPD_ARATH 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (AtMECT) (AtMEPCT) DISRUPTION PHENOTYPE: Albino phenotype and seedling lethal when homozygous. The phenotype is caused by an early arrest in chloroplast differentiation. {ECO:0000269|PubMed:18236010}. Seedling lethal (inferred from pigment defect); Albino-J. Chen-2008 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Is essential for chloroplast development and required for pigments and gibberellins biosynthesis. {ECO:0000269|PubMed:10841550, ECO:0000269|PubMed:12029484, ECO:0000269|PubMed:18236010}. PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 2/6. ARA:AT2G02500-MONOMER;MetaCyc:AT2G02500-MONOMER; 2.7.7.60; 2.7.7.60 33937 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (AtMECT) (AtMEPCT) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [GO:0050518]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, but not in roots. {ECO:0000269|PubMed:12029484, ECO:0000269|PubMed:18236010}. locus:2065264; AT2G02500 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (OsCMS) (MEP cytidylyltransferase),Os01g0887100 protein (Fragment) Q5N8G1,A0A0P0VBA2 ISPD_ORYSJ,A0A0P0VBA2_ORYSJ ISPD CMS Os01g0887000 LOC_Os01g66360 OsJ_04342 P0408G07.39 P0434C04.18,Os01g0887100 OSNPB_010887100 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Is essential for chloroplast development (By similarity). {ECO:0000250}. ENOG411DWP1 VTE4 Q9ZSK1 GTOMC_ARATH Tocopherol O-methyltransferase, chloroplastic (EC 2.1.1.95) (Gamma-tocopherol methyltransferase) (Vitamin E pathway gene 4 protein) (AtVTE4) DISRUPTION PHENOTYPE: Slight reduction of fresh weight in mature plants. Leaves with high levels of gamma-tocopherol and absence of alpha-tocopherol. {ECO:0000269|PubMed:14682617}. Slightly reduced fresh weight; Low alpha and beta tocopherol levels-P. Doermann-2003 FUNCTION: Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. {ECO:0000269|PubMed:12586887, ECO:0000269|PubMed:14682617, ECO:0000269|PubMed:9851934}. MISCELLANEOUS: Seeds overexpressing VTE4 show increased levels of alpha-tocopherol. PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis. 2.1.1.95; 2.1.1.95 38075 Tocopherol O-methyltransferase, chloroplastic (EC 2.1.1.95) (Gamma-tocopherol methyltransferase) (Vitamin E pathway gene 4 protein) (AtVTE4) chloroplast [GO:0009507]; 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity [GO:0051741]; tocopherol O-methyltransferase activity [GO:0050342]; vitamin E biosynthetic process [GO:0010189] locus:2010921; AT1G64970 gamma-tocopherol methyltransferase Probable tocopherol O-methyltransferase, chloroplastic (EC 2.1.1.95) (Gamma-tocopherol methyltransferase) (Vitamin E pathway gene 4 protein) Q6ZIK0 GTOMC_ORYSJ VTE4 G-TMT TMT Os02g0701600 LOC_Os02g47310 OJ1111_E07.25 FUNCTION: Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively (By similarity). {ECO:0000250}. ENOG411DWP0 SOC1,AGL20 O64645,A0A1P8AX26 SOC1_ARATH,A0A1P8AX26_ARATH MADS-box protein SOC1 (Agamous-like MADS-box protein AGL20) (Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1),AGAMOUS-like 20 DISRUPTION PHENOTYPE: Plants are late-flowering. {ECO:0000269|PubMed:11123798}. Double mutant flowered later than the soc1 single mutant and this delay was more pronounced in SD (additional 15 leaves) than in LD (additional two leaves).,Delayed flowering both in long- and short-days growth conditions.,Extreme acceleration of flowering time.,Flowered more rapidly under long days than under short days. Vernalization reduced flowering time in the mutant but the reduction was higher than in WT Columbia.,Slight increase in delay of flowering compared to agl24 single mutant.,Slight increase in delay in flowering under LD conditions compared to soc1-2 single mutant. Late flowering independent of photoperiod-I. Lee-2000 FUNCTION: Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulate class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. {ECO:0000269|PubMed:10995392, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:19656343}. 24533,18353 MADS-box protein SOC1 (Agamous-like MADS-box protein AGL20) (Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1),AGAMOUS-like 20 cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor binding [GO:0008134]; cell differentiation [GO:0030154]; flower development [GO:0009908]; maintenance of inflorescence meristem identity [GO:0010077]; positive regulation of flower development [GO:0009911]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; positive regulation of transcription, DNA-templated [GO:0045893]; protein import into nucleus, translocation [GO:0000060]; response to cold [GO:0009409]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Rapidly up-regulated in apical meristems during the transition to flowering. Transiently expressed in inflorescence meristem. Re-appears in stage 3 flowers, in the central dome that later will develop into stamens and carpels. {ECO:0000269|PubMed:19656343}. TISSUE SPECIFICITY: Widely expressed. Not found in the apical meristem of short-day grown plants in vegetative stage. locus:2005522; AT2G45660 transcription factor NA NA NA NA NA NA NA ENOG411DWP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0694200 protein Q5N9Q6 Q5N9Q6_ORYSJ Os01g0694200 OSNPB_010694200 P0431H09.11 ENOG411DWP8 CPN60B2,CPN60B3,CPN60B1 Q9LJE4,C0Z361,P21240 CPNB2_ARATH,CPNB3_ARATH,CPNB1_ARATH Chaperonin 60 subunit beta 2, chloroplastic (CPN-60 beta 2),Chaperonin 60 subunit beta 3, chloroplastic (CPN-60 beta 3),Chaperonin 60 subunit beta 1, chloroplastic (CPN-60 beta 1) (60 kDa chaperonin subunit beta 1) (RuBisCO large subunit-binding protein subunit beta, chloroplastic) DISRUPTION PHENOTYPE: No visible phenotype; due to redundancy with CPN60B1. Cpn60B1 and cpn60B2 double mutant produces small albino seedlings. {ECO:0000269|PubMed:19344532}.,DISRUPTION PHENOTYPE: Normal germination, but chloroplast-division defect and late dwarf phenotype. Lesion formation on leaves when grown under short-day conditions. Cpn60B1 and cpn60B2 double mutant produces small albino seedlings. {ECO:0000269|PubMed:12668771, ECO:0000269|PubMed:19344532}. Dwarf; Wrinkled leaves; Variegated leaves under short days; Sensitive to high temperature-T. Asahi-2003 FUNCTION: Involved in protein assisted folding. {ECO:0000269|PubMed:18353762, ECO:0000269|PubMed:19224397, ECO:0000269|PubMed:19344532, ECO:0000269|Ref.5}.,FUNCTION: Involved in protein assisted folding. {ECO:0000269|PubMed:19224397, ECO:0000269|Ref.7}.,FUNCTION: Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Involved in protein assisted folding. Required for proper plastid division. {ECO:0000269|PubMed:12668771, ECO:0000269|PubMed:18353762, ECO:0000269|PubMed:19224397, ECO:0000269|PubMed:19344532, ECO:0000269|Ref.10}. MISCELLANEOUS: Assisted protein folding requires ATP hydrolysis, but not K(+) ions. Legionellosis (05134),RNA degradation (03018),Type I diabetes mellitus (04940),Tuberculosis (05152) 63342,63325,63809 Chaperonin 60 subunit beta 2, chloroplastic (CPN-60 beta 2),Chaperonin 60 subunit beta 3, chloroplastic (CPN-60 beta 3),Chaperonin 60 subunit beta 1, chloroplastic (CPN-60 beta 1) (60 kDa chaperonin subunit beta 1) (RuBisCO large subunit-binding protein subunit beta, chloroplastic) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; mitochondrion organization [GO:0007005]; protein refolding [GO:0042026],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; mitochondrion organization [GO:0007005]; protein refolding [GO:0042026],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; stromule [GO:0010319]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; protein domain specific binding [GO:0019904]; unfolded protein binding [GO:0051082]; cell death [GO:0008219]; chaperone mediated protein folding requiring cofactor [GO:0051085]; mitochondrion organization [GO:0007005]; protein refolding [GO:0042026]; response to cold [GO:0009409]; systemic acquired resistance [GO:0009627] TISSUE SPECIFICITY: Expressed in leaves, stems, petioles and flowers. {ECO:0000269|PubMed:7906560}. locus:2092825;,locus:2161048;,locus:2193839; AT3G13470,AT5G56500,AT1G55490 RuBisCO large subunit-binding protein subunit beta Os06g0114000 protein (Putative chaperonin 60 beta) (RuBisCo subunit binding-protein beta subunit) (cDNA clone:J033034I03, full insert sequence),Os06g0114000 protein (Fragment) Q9LWT6,A0A0P0WS14,A0A0P0WRC8 Q9LWT6_ORYSJ,A0A0P0WS14_ORYSJ,A0A0P0WRC8_ORYSJ Os06g0114000 Os06g0114000 OSNPB_060114000 P0541H01.20,Os06g0114000 OSNPB_060114000 ENOG411EJEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DR7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E96Z P0DKG5 MCC08_ARATH MATH domain and coiled-coil domain-containing protein At2g42470 (RTM3-like protein At2g42470) 35390 MATH domain and coiled-coil domain-containing protein At2g42470 (RTM3-like protein At2g42470) AT2G42470 MATH domain NA NA NA NA NA NA NA ENOG411DR70 F14P13.8 Q9SS43,A0A1P8B095 Q9SS43_ARATH,A0A1P8B095_ARATH F14P13.8 protein (Glycosyltransferase) (Glycosyltransferase family 61 protein) (Uncharacterized protein At3g10320),Glycosyltransferase family 61 protein 57287,46778 F14P13.8 protein (Glycosyltransferase) (Glycosyltransferase family 61 protein) (Uncharacterized protein At3g10320),Glycosyltransferase family 61 protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; 1,4-beta-D-xylan synthase activity [GO:0047517]; mucilage biosynthetic process [GO:0010192]; mucilage biosynthetic process involved in seed coat development [GO:0048354],transferase activity, transferring glycosyl groups [GO:0016757] locus:2076274; AT3G10320 glycosyltransferase HGA1-like protein (Os01g0498300 protein) (cDNA clone:J023019B01, full insert sequence),Os07g0657400 protein (Symbiosis-related protein-like protein) Q5VNI5,Q8GRV4 Q5VNI5_ORYSJ,Q8GRV4_ORYSJ Os01g0498300 Os01g0498300 B1111E11.20 OJ1126_G08.49 OsJ_01912 OSNPB_010498300,OJ1477_F01.102 P0047B07.123 Os07g0657400 OSNPB_070657400 ENOG411DX2B A0A1P8B7T0,A0A1P8B7S8,F4JQX7 A0A1P8B7T0_ARATH,A0A1P8B7S8_ARATH,F4JQX7_ARATH Protein kinase superfamily protein R-ATH-430116;R-ATH-442742;R-ATH-5673000;R-ATH-5674135;R-ATH-5674499;R-ATH-5675221; 106190,106681,107211 Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556] locus:2135957; AT4G24480 serine threonine-protein kinase CTR1-like OSJNBa0085I10.15 protein (Os04g0610900 protein) Q7XPL1 Q7XPL1_ORYSJ Os04g0610900 OSJNBa0085I10.15 OSNPB_040610900 ENOG411DX2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Cyclin-T1-2 (CycT1;2),Os02g0438200 protein Q6Z7H3,A0A0N7KF80 CCT12_ORYSJ,A0A0N7KF80_ORYSJ CYCT1_2 Os02g0438200 LOC_Os02g24190 OJ1570_H12.4-1 OJ1570_H12.4-2 OsJ_06547,Os02g0438200 OSNPB_020438200 ENOG411DX2A COL10,COL9 Q9LUA9,Q9SSE5 COL10_ARATH,COL9_ARATH Zinc finger protein CONSTANS-LIKE 10,Zinc finger protein CONSTANS-LIKE 9 Flowers consistently ealier than wild-type plants under long day conditions. Few leaves; Early flowering-Z. Wang-2005 41245,40754 Zinc finger protein CONSTANS-LIKE 10,Zinc finger protein CONSTANS-LIKE 9 nucleus [GO:0005634]; plasma membrane [GO:0005886]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; circadian rhythm [GO:0007623]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; regulation of transcription, DNA-templated [GO:0006355] locus:2164718;,locus:2091082; AT5G48250,AT3G07650 Zinc finger protein CONSTANS-LIKE Os06g0298200 protein (cDNA clone:J013001A08, full insert sequence),CONSTANS-like protein Days to heading on chromosome 2 (Os02g0724000 protein) (Zinc finger protein) (cDNA clone:J023105D03, full insert sequence),Os06g0298200 protein,Os08g0233300 protein (Fragment) B7EN35,O82118,Q0DCR8,A0A0P0XDD7 B7EN35_ORYSJ,O82118_ORYSJ,Q0DCR8_ORYSJ,A0A0P0XDD7_ORYSJ Os06g0298200 OSNPB_060298200,DTH2 Os02g0724000 OSNPB_020724000 P0685G12.25,Os06g0298200 Os06g0298200 OSNPB_060298200,Os08g0233300 OSNPB_080233300 ENOG411DX2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Piwi Protein argonaute 1C (OsAGO1c) (Protein argonaute 1) (OsAGO1),Protein argonaute 1D (OsAGO1d),Os06g0729300 protein (Fragment) Q6K972,Q5Z5B2,A0A0N7KMS5 AGO1C_ORYSJ,AGO1D_ORYSJ,A0A0N7KMS5_ORYSJ AGO1C AGO1 Os02g0831600 LOC_Os02g58490 OJ1149_C12.13 OsJ_08998,AGO1D Os06g0729300 LOC_Os06g51310 OSJNBa0069C14.10-1,Os06g0729300 OSNPB_060729300 FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411DX2D F6N15.2 O81325 O81325_ARATH ARM repeat superfamily protein (F6N15.2 protein) (Uncharacterized protein At4g00231) (Uncharacterized protein At4g00231/F6N15.2) 53174 ARM repeat superfamily protein (F6N15.2 protein) (Uncharacterized protein At4g00231) (Uncharacterized protein At4g00231/F6N15.2) embryo development ending in seed dormancy [GO:0009793] locus:505006409; AT4G00231 Spinocerebellar ataxia type 10 protein domain Expressed protein (Os03g0118900 protein) (cDNA clone:J033030H10, full insert sequence) Q8H050 Q8H050_ORYSJ Os03g0118900 LOC_Os03g02720 Os03g0118900 OJ1263H11.5 OsJ_09192 OSNPB_030118900 ENOG411DX2R MDAR4 Q9LK94 MDAR4_ARATH Monodehydroascorbate reductase 4, peroxisomal (AtMDAR4) (EC 1.6.5.4) DISRUPTION PHENOTYPE: Conditional seedling-lethal phenotype due to the unability of the seeds to break down storage oil to provide carbon skeletons and energy for early seedling growth. {ECO:0000269|PubMed:17449810}. cotyledons fail to expand or green and seedling growth arrests. Severely impaired in its ability to breakdown triacylglycerol. Peroxisomes and oil bodies cluster together,cotyledons fail to expand or green and seedling growth arrests. Severely impaired in its ability to breakdown triacylglycerol,cotyledons fail to expand or green and seedling growth arrests. Severely impaired in its ability to breakdown triacylglycero Seedling lethal-P. Eastmond-2007 FUNCTION: Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process (PubMed:16146528). Involved in the detoxification of H(2)O(2) that escapes the peroxisome and causes oxidative damage to oil bodies (PubMed:17449810). {ECO:0000269|PubMed:16146528, ECO:0000269|PubMed:17449810}. ARA:AT3G27820-MONOMER; 1.6.5.4; 1.6.5.4 53526 Monodehydroascorbate reductase 4, peroxisomal (AtMDAR4) (EC 1.6.5.4) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; flavin adenine dinucleotide binding [GO:0050660]; monodehydroascorbate reductase (NADH) activity [GO:0016656]; hydrogen peroxide catabolic process [GO:0042744] locus:2086430; AT3G27820 Monodehydroascorbate reductase Monodehydroascorbate reductase 2, peroxisomal (OsMDAR2) (OsMDHAR2) (EC 1.6.5.4),Os02g0707100 protein (Fragment) Q8S3R2,A0A0N7KFY7 MDAR2_ORYSJ,A0A0N7KFY7_ORYSJ MDAR2 MDHAR2 Os02g0707100 LOC_Os02g47800 49D11.20a OsJ_35954 P0680A05.39,Os02g0707100 OSNPB_020707100 FUNCTION: Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Ascorbate is a major antioxidant against reactive oxygen species (ROS) and nitric oxide (NO). {ECO:0000250|UniProtKB:Q652L6}. ENOG411DX2S LRR-RLK Q9LT96,Q8GZ99,A0A1R7T3H0,A0A1R7T3H1,F4K685,F4K682 Y5977_ARATH,Q8GZ99_ARATH,A0A1R7T3H0_ARATH,A0A1R7T3H1_ARATH,F4K685_ARATH,F4K682_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g49770 (EC 2.7.11.1),At5g49760 (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase) (Putative receptor protein kinase),Leucine-rich repeat protein kinase family protein,Leucine-rich repeat (LRR) family protein 2.7.11.1 104523,104708,108256,105832,95034,54775 Probable leucine-rich repeat receptor-like protein kinase At5g49770 (EC 2.7.11.1),At5g49760 (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase) (Putative receptor protein kinase),Leucine-rich repeat protein kinase family protein,Leucine-rich repeat (LRR) family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2156992;,locus:2157042;,locus:2157002;,locus:2157047; AT5G49770,AT5G49760,AT5G49780,AT5G49750 Leucine-rich repeat receptor-like protein kinase Leucine Rich Repeat family protein, expressed (Os12g0210400 protein) (cDNA clone:J013159D03, full insert sequence),Os11g0245200 protein,Os10g0145800 protein Q2QW32,A0A0P0Y0Y5,A0A0P0XRL9 Q2QW32_ORYSJ,A0A0P0Y0Y5_ORYSJ,A0A0P0XRL9_ORYSJ Os12g0210400 LOC_Os12g10740 Os12g0210400 OSNPB_120210400,Os11g0245200 OSNPB_110245200,Os10g0145800 OSNPB_100145800 ENOG411DX2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase OSJNBa0043L09.10 protein (Os04g0634000 protein),Os04g0634400 protein Q7XQT7,A0A0P0WF71 Q7XQT7_ORYSJ,A0A0P0WF71_ORYSJ Os04g0634000 Os04g0634000 OSJNBa0043L09.10 OSNPB_040634000,Os04g0634400 OSNPB_040634400 ENOG411DX2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inositol 1 3 4-trisphosphate 5/6-kinase Inositol-tetrakisphosphate 1-kinase 4 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 4) (Inositol-triphosphate 5/6-kinase 4) (Ins(1,3,4)P(3) 5/6-kinase 4) (OsITP5/6K-4) (OsITPK4) (EC 2.7.1.159),Os02g0466400 protein (Fragment) Q6K7B8,A0A0P0VIU9 ITPK4_ORYSJ,A0A0P0VIU9_ORYSJ ITPK4 Os02g0466400 LOC_Os02g26720 OJ1342_D02.13 OsJ_06663,Os02g0466400 OSNPB_020466400 FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000250|UniProtKB:Q84Y01}. ENOG411DX20 PXC1 Q9M9C5,Q9SJQ1 Y1680_ARATH,PXC1_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g68400 (EC 2.7.11.1),Leucine-rich repeat receptor-like protein kinase PXC1 (Protein PXY/TDR-CORRELATED 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but under short day conditions inflorescence stems of mutant plants show dramatic reduction of secondary cell wall formation in xylem fibers, leading to the inability of the stems to support an upright growth. {ECO:0000269|PubMed:23815750}. FUNCTION: Leucine-rich repeat receptor-like protein kinase involved in secondary cell wall formation in xylem fibers. May play a role in a regulatory network which also incorporates the TDR/PXY signaling pathway and regulates the maturation of interfascicular fiber cells. May promote the initiation of secondary cell wall deposition during the procedure of cell expansion. {ECO:0000269|PubMed:23815750}. 2.7.11.1 73521,73539 Probable leucine-rich repeat receptor-like protein kinase At1g68400 (EC 2.7.11.1),Leucine-rich repeat receptor-like protein kinase PXC1 (Protein PXY/TDR-CORRELATED 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; plant-type secondary cell wall biogenesis [GO:0009834] TISSUE SPECIFICITY: Expressed in the vascular strands of cotyledons, the shoot apex, hypocotyls, roots, leaves, stems and flowers. {ECO:0000269|PubMed:23815750}. locus:2202359;,locus:2044913; AT1G68400,AT2G36570 Leucine-rich repeat receptor-like protein kinase Os12g0519850 protein,Os12g0145900 protein (Fragment),Os01g0133900 protein (Fragment) Q2QPR1,A0A0P0Y746,A0A0P0UYI3 Q2QPR1_ORYSJ,A0A0P0Y746_ORYSJ,A0A0P0UYI3_ORYSJ Os12g0519850 LOC_Os12g33600 OSNPB_120519850,Os12g0145900 OSNPB_120145900,Os01g0133900 OSNPB_010133900 ENOG411DX26 ATL42,ATL12 Q5XF85,Q9SL78 ATL42_ARATH,ATL12_ARATH E3 ubiquitin-protein ligase ATL42 (EC 2.3.2.27) (RING-H2 finger protein ATL42) (RING-type E3 ubiquitin transferase ATL42),Putative RING-H2 finger protein ATL12 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL12) FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. {ECO:0000269|PubMed:15644464}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 49374,45014 E3 ubiquitin-protein ligase ATL42 (EC 2.3.2.27) (RING-H2 finger protein ATL42) (RING-type E3 ubiquitin transferase ATL42),Putative RING-H2 finger protein ATL12 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL12) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2123558;,locus:2061698; AT4G28890,AT2G20030 finger protein Os05g0596500 protein (cDNA clone:J023066I04, full insert sequence) Q5TKE9 Q5TKE9_ORYSJ Os05g0596500 Os05g0596500 OsJ_19782 OSJNBa0030I14.17 OSJNBb0086G17.9 OSNPB_050596500 ENOG411DX25 REP Q8LLD4 REP_ARATH Rab escort protein 1 (AthREP) FUNCTION: Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component composed of the alpha subunit RGTA and the beta subunit RGTB (Probable). Preferentially binds the GDP-bound form of Rab and stimulates geranylgeranylation of various Rab GTPases in vitro (PubMed:15854662). {ECO:0000269|PubMed:15854662, ECO:0000305|PubMed:15854662, ECO:0000305|PubMed:17140818}. R-ATH-6803205;R-ATH-8873719;R-ATH-8876198; 61511 Rab escort protein 1 (AthREP) cytoplasm [GO:0005737]; cytosol [GO:0005829]; Rab-protein geranylgeranyltransferase complex [GO:0005968]; GDP-dissociation inhibitor activity [GO:0005092]; GTPase activator activity [GO:0005096]; oxidoreductase activity [GO:0016491]; Rab GTPase binding [GO:0017137]; intracellular protein transport [GO:0006886]; positive regulation of protein geranylgeranylation [GO:2000541]; protein geranylgeranylation [GO:0018344]; small GTPase mediated signal transduction [GO:0007264] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:17140818}. locus:2084289; AT3G06540 Rab proteins geranylgeranyltransferase component Os01g0269100 protein Q0JNR7 Q0JNR7_ORYSJ Os01g0269100 Os01g0269100 OSNPB_010269100 ENOG411EKVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EJIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os02g0494400 protein,Os02g0494000 protein C7IYT3,A0A0P0VJ73 C7IYT3_ORYSJ,A0A0P0VJ73_ORYSJ Os02g0494400 Os02g0494400 OSNPB_020494400,Os02g0494000 OSNPB_020494000 ENOG411EIIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UDP-Glycosyltransferase NA NA NA NA NA NA NA ENOG411EIIZ Q1G3K5 Q1G3K5_ARATH Uncharacterized protein 6313 Uncharacterized protein locus:4515103484; AT4G33145 at4g33145 (e NA NA NA NA NA NA NA ENOG411EIIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EIIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA late embryogenesis abundant protein Os12g0626500 protein A0A0P0YD55 A0A0P0YD55_ORYSJ Os12g0626500 OSNPB_120626500 ENOG411EIIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIP O81764 O81764_ARATH At4g33960 (Uncharacterized protein AT4g33960) (Uncharacterized protein F17I5.150) 7600 At4g33960 (Uncharacterized protein AT4g33960) (Uncharacterized protein F17I5.150) locus:2118939; AT4G33960 at4g33960 (e NA NA NA NA NA NA NA ENOG411EIIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0559800 protein A0A0P0WQ69 A0A0P0WQ69_ORYSJ Os05g0559800 OSNPB_050559800 ENOG411EIIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BED zinc finger Os10g0549900 protein,Os12g0538000 protein,Os12g0538066 protein C7J7Y6,A0A0P0YAY6,A0A0P0YAZ0 C7J7Y6_ORYSJ,A0A0P0YAY6_ORYSJ,A0A0P0YAZ0_ORYSJ Os10g0549900 OSNPB_100549900,Os12g0538000 OSNPB_120538000,Os12g0538066 OSNPB_120538066 ENOG411EIIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EIIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EIIH B3H5M1,B3H640,B3H4D2 B3H5M1_ARATH,B3H640_ARATH,B3H4D2_ARATH Uncharacterized protein,Transmembrane protein 8241,9222,8545 Uncharacterized protein,Transmembrane protein integral component of membrane [GO:0016021] locus:4515103690;,locus:4515102795;,locus:4515103020; AT5G43695,AT2G04622,AT3G03826 NA NA NA NA NA NA NA NA ENOG411EIIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0857250 protein C7IX59 C7IX59_ORYSJ Os01g0857250 Os01g0857250 OSNPB_010857250 ENOG411EIIF CLE41 Q84W98 CLE41_ARATH CLAVATA3/ESR (CLE)-related protein 41 (Tracheary element differentiation inhibitory factor-like protein) (TDIF-like protein) [Cleaved into: CLE41p] FUNCTION: Extracellular signal peptide that regulates cell fate. May act with TDR as a ligand-receptor pair in a signal transduction pathway that represses tracheary element differentiation but promotes the formation of procambial cells adjacent to phloem cells in the veins in an auxin-dependent manner. {ECO:0000269|PubMed:16902140, ECO:0000269|PubMed:18812507, ECO:0000269|PubMed:19011104}. 11018 CLAVATA3/ESR (CLE)-related protein 41 (Tracheary element differentiation inhibitory factor-like protein) (TDIF-like protein) [Cleaved into: CLE41p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; axillary shoot meristem initiation [GO:0090506]; cell division [GO:0051301]; cell-cell signaling involved in cell fate commitment [GO:0045168]; phloem or xylem histogenesis [GO:0010087]; procambium histogenesis [GO:0010067]; secondary shoot formation [GO:0010223]; vasculature development [GO:0001944]; xylem development [GO:0010089] TISSUE SPECIFICITY: Mostly expressed in inflorescence and roots, and, to a lower extent, in seedlings, flowers, leaves and siliques. Observed along the vascular strands in cotyledons, leaves and roots, but not in shoot apical meristems (SAM). Restricted to the phloem and the neighboring pericycle cells in the roots and hypocotyls. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:18812507}. locus:2087328; AT3G24770 NA NA NA NA NA NA NA NA ENOG411EIIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EII9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411EII8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EII5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EII4 Q9FX44 Q9FX44_ARATH Uncharacterized protein T9L24.31 17568 Uncharacterized protein T9L24.31 locus:2206875; AT1G73510 NA NA NA NA NA NA NA NA ENOG411EII7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EII6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CemA family NA NA NA NA NA NA NA ENOG411EII1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0277800 protein A0A0P0Y8Z4 A0A0P0Y8Z4_ORYSJ Os12g0277800 OSNPB_120277800 ENOG411EII0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA female gametophyte-specific protein NA NA NA NA NA NA NA ENOG411EII3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EII2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase beta subunit Os03g0646800 protein (Fragment) A0A0P0W1F5 A0A0P0W1F5_ORYSJ Os03g0646800 OSNPB_030646800 ENOG411E98X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411DU89 NRAMP6,NRAMP1 Q9S9N8,Q9SAH8 NRAM6_ARATH,NRAM1_ARATH Metal transporter Nramp6 (AtNramp6),Metal transporter Nramp1 (AtNramp1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but in presence of Cd, increased tolerance to Cd toxicity. {ECO:0000269|PubMed:19545236}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but under Mn limitation, very slow growth and unable to take up Mn. {ECO:0000269|PubMed:20228245}. Resistant to cadium-C. Curie-2009,Sensitive to manganese starvation-C. Curie-2010 FUNCTION: Probable intracellular cadmium (Cd) transporter that participates in the distribution or availability of Cd within the cell. {ECO:0000269|PubMed:19545236}.,FUNCTION: High affinity manganese (Mn) transporter involved in Mn acquisition from the soil. Required for Mn uptake into the root in conditions of low Mn availability. Can transport iron (Fe), cadmium (Cd) and cobalt (Co). {ECO:0000269|PubMed:10769179, ECO:0000269|PubMed:10781110, ECO:0000269|PubMed:20228245}. 57245,57562 Metal transporter Nramp6 (AtNramp6),Metal transporter Nramp1 (AtNramp1) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; cadmium ion transmembrane transporter activity [GO:0015086]; cadmium ion transmembrane transport [GO:0070574]; iron ion homeostasis [GO:0055072],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cadmium ion transmembrane transporter activity [GO:0015086]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cadmium ion transmembrane transport [GO:0070574]; iron ion homeostasis [GO:0055072]; iron ion transmembrane transport [GO:0034755]; manganese ion homeostasis [GO:0055071]; manganese ion transmembrane transport [GO:0071421] TISSUE SPECIFICITY: Expressed in the vascular bundles of shoots, cotyledons, young leaves, sepals and petals, at the top of the flower stem and in the style. Expressed in the peduncle of developing siliques as well as in the septum and the funiculi. {ECO:0000269|PubMed:19545236}. locus:2200437;,locus:2025677; AT1G15960,AT1G80830 Metal transporter Metal transporter Nramp3 (OsNramp3) Q653V6 NRAM3_ORYSJ NRAMP3 Os06g0676000 LOC_Os06g46310 B1153E06.4 OsJ_22349 FUNCTION: Probable metal transporter. {ECO:0000250}. ENOG411E388 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF821 NA NA NA NA NA NA NA ENOG411EEVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Synaptobrevin NA NA NA NA NA NA NA ENOG411EEVG RBG5 Q9C909 RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial (AtGR-RBP5) (AtRBG5) (Mitochondrial RNA-binding protein 2b) (At-mRBP2b) (Organelle RRM domain-containing protein 4) DISRUPTION PHENOTYPE: Reduced growth rate and delayed flowering. {ECO:0000269|PubMed:26578708}. FUNCTION: Possibly has a role in RNA transcription or processing during stress (By similarity). Binds RNAs and DNAs sequence with a preference to single-stranded nucleic acids. Displays strong affinity to poly(U) sequence (PubMed:11972043). Involved in C-to-U editing of mitochondrial RNA. Functions as major mitochondrial editing factor. Controls 44 percent of the mitochondrial editing sites (PubMed:26578708). {ECO:0000250|UniProtKB:Q9LIS2, ECO:0000269|PubMed:11972043, ECO:0000269|PubMed:26578708}. 28728 Glycine-rich RNA-binding protein 5, mitochondrial (AtGR-RBP5) (AtRBG5) (Mitochondrial RNA-binding protein 2b) (At-mRBP2b) (Organelle RRM domain-containing protein 4) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; mRNA binding [GO:0003729]; protein self-association [GO:0043621]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2019622; AT1G74230 glycine-rich RNA-binding protein 5 NA NA NA NA NA NA NA ENOG411EEVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S27a NA NA NA NA NA NA NA ENOG411EEVC Q9LER3,Q6DR30 Q9LER3_ARATH,Q6DR30_ARATH At5g14730 (Uncharacterized protein At5g14730) (Uncharacterized protein T9L3_30),Uncharacterized protein 27285,24227 At5g14730 (Uncharacterized protein At5g14730) (Uncharacterized protein T9L3_30),Uncharacterized protein locus:2185450;,locus:504955813; AT5G14730,AT3G01513 NA NA NA NA NA NA NA NA ENOG411EEVX IAA15 Q9C966 IAA15_ARATH Auxin-responsive protein IAA15 (Indoleacetic acid-induced protein 15) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 20069 Auxin-responsive protein IAA15 (Indoleacetic acid-induced protein 15) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] locus:2034200; AT1G80390 AUX/IAA family NA NA NA NA NA NA NA ENOG411EEVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EEV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Heat shock protein NA NA NA NA NA NA NA ENOG411EEV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Tetratricopeptide repeat domain 37 Os10g0548200 protein (Fragment) A0A0N7KS61 A0A0N7KS61_ORYSJ Os10g0548200 OSNPB_100548200 ENOG411EEV6 CYTB5-D Q9ZWT2 CYB5D_ARATH Cytochrome B5 isoform D (AtCb5-D) (Cytochrome b5 isoform B) (AtCb5-B) FUNCTION: Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases, including fatty acid desaturases. {ECO:0000269|PubMed:22384013, ECO:0000269|PubMed:9880378}. 15097 Cytochrome B5 isoform D (AtCb5-D) (Cytochrome b5 isoform B) (AtCb5-B) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; defense response to bacterium [GO:0042742]; oxidation-reduction process [GO:0055114] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9880378}. locus:2156534; AT5G48810 cytochrome b5 isoform d NA NA NA NA NA NA NA ENOG411EEV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ham1 family NA NA NA NA NA NA NA ENOG411EEV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NA NA NA NA NA NA NA ENOG411EEV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EEV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EEV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand NA NA NA NA NA NA NA ENOG411EKTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH-Ubiquinone/plastoquinone (complex I) various chains NA NA NA NA NA NA NA ENOG411DVR4 IP5P3 Q8H0Z6,F4IA20 IP5P3_ARATH,F4IA20_ARATH Type IV inositol polyphosphate 5-phosphatase 3 (At5PTase3) (EC 3.1.3.36) (EC 3.1.3.86),DNAse I-like superfamily protein FUNCTION: Has phosphatase activity toward PtdIns(4,5)P2 and PtdIns(3,4,5)P3. {ECO:0000269|PubMed:21677096}. ARA:AT1G71710-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.36; 3.1.3.86 74780,73898 Type IV inositol polyphosphate 5-phosphatase 3 (At5PTase3) (EC 3.1.3.36) (EC 3.1.3.86),DNAse I-like superfamily protein phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; phosphatidylinositol dephosphorylation [GO:0046856],phosphatidylinositol dephosphorylation [GO:0046856] locus:2013031; AT1G71710 type I inositol-145-trisphosphate 5-phosphatase Os01g0716800 protein,Os05g0535600 protein,Os01g0716800 protein (Fragment) Q0JJU2,A0A0N7KL55,A0A0P0V7D5 Q0JJU2_ORYSJ,A0A0N7KL55_ORYSJ,A0A0P0V7D5_ORYSJ Os01g0716800 Os01g0716800 OSNPB_010716800,Os05g0535600 OSNPB_050535600,Os01g0716800 OSNPB_010716800 ENOG411DVR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DVR6 ATR3 Q6NPS8,F4J7R4 NDOR1_ARATH,F4J7R4_ARATH NADPH-dependent diflavin oxidoreductase 1 (EC 1.18.1.-) (NADPH-dependent FMN and FAD-containing oxidoreductase),NADPH-dependent diflavin oxidoreductase DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. Embryo development arrested at 2 to 4-cell stages. {ECO:0000269|PubMed:20406405}. Embryo defective; Preglobular-Delorme-2010 FUNCTION: Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe-S cluster of the anamorsin/DRE2 homolog (By similarity). Catalyzes the NADP-dependent reduction of cytochrome c, but not cytochrome P450 in vitro. Required for embryo development. {ECO:0000255|HAMAP-Rule:MF_03178, ECO:0000269|PubMed:20406405}. ARA:AT3G02280-MONOMER; 1.18.1.- 70412,7152 NADPH-dependent diflavin oxidoreductase 1 (EC 1.18.1.-) (NADPH-dependent FMN and FAD-containing oxidoreductase),NADPH-dependent diflavin oxidoreductase cytoplasm [GO:0005737]; nucleus [GO:0005634]; FMN binding [GO:0010181]; NADPH-hemoprotein reductase activity [GO:0003958]; oxidoreductase activity, acting on NAD(P)H [GO:0016651]; embryo development ending in seed dormancy [GO:0009793] DEVELOPMENTAL STAGE: Expressed in cell cycle-dependent manner. Most abundant at the G2 and G2/M transition. Lowest expression in S and M phases. {ECO:0000269|PubMed:20406405}. TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:20406405}. locus:2076547;,locus:2093136; AT3G02280,AT3G24710 NADPH-dependent diflavin oxidoreductase NADPH-dependent diflavin oxidoreductase 1 (EC 1.18.1.-) (NADPH-dependent FMN and FAD-containing oxidoreductase) Q5JL61 Q5JL61_ORYSJ Os01g0733600 Os01g0733600 B1060H01.9 OSJNBb0036G09.20 OSNPB_010733600 FUNCTION: Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe-S cluster of the anamorsin/DRE2 homolog. {ECO:0000256|HAMAP-Rule:MF_03178}. ENOG411DVR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os06g0212100 protein (Putative galactoside 2-alpha-L-fucosyltransferase) Q69TV8 Q69TV8_ORYSJ Os06g0212100 Os06g0212100 OSNPB_060212100 P0021C04.34 P0701E03.11 ENOG411DVR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain OSJNBa0038O10.17 protein (Os04g0526800 protein) (cDNA clone:006-311-H09, full insert sequence),ABA-responsive protein-like (Os02g0636600 protein) Q7XKJ1,Q6H5X3 Q7XKJ1_ORYSJ,Q6H5X3_ORYSJ Os04g0526800 Os04g0526800 OsJ_15532 OSJNBa0038O10.17 OSNPB_040526800,Os02g0636600 Os02g0636600 OJ1581_H09.11 OsJ_07652 OSJNBa0014E22.5 OSNPB_020636600 ENOG411DVR1 EB1A,EB1B Q7XJ60,Q9FJJ5 EB1A_ARATH,EB1B_ARATH Microtubule-associated protein RP/EB family member 1A (APC-binding protein EB1A) (End-binding protein 1A) (AtEB1A) (Protein ATEB1 homolog 2) (AtEB1H2),Microtubule-associated protein RP/EB family member 1B (APC-binding protein EB1B) (End-binding protein 1) (AtEB1) (End-binding protein 1B) (AtEB1B) (Protein ATEB1 homolog 2) (ATEB1H2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18281505, ECO:0000269|PubMed:20067996}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but root growth is affected in response to gravity or touch stimuli. conditions. {ECO:0000269|PubMed:18281505, ECO:0000269|PubMed:20067996}. When plants are grown on inclined agar plates root growth is skewed to the left forming clockwise loops with twisted epidermal cell files.,Plants grown on agar plates have roots that skew towards the left occasionally forming clockwise loops with twisted epidermal cell files. Also has reduced/delayed response to gravity. Abnormal root gravitropism and thigmotropism-D. Kropf-2008 FUNCTION: Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. May be involved in anchoring microtubules to their nucleation sites and/or functioning as a reservoir for distribution to the growing end. In plants, microtubule minus ends are not necessarily severed from the nucleation site and transported to the plus end of a microtubule as part of the recycling process. May play a role in endomembrane organization during polarized growth of plant cells. Interacts with the tobamovirus movement protein (MP) and may play a role in the association of MP with the microtubule system during infection. {ECO:0000269|PubMed:14557818, ECO:0000269|PubMed:20067996}.,FUNCTION: Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. May be involved in anchoring microtubules to their nucleation sites and/or functioning as a reservoir for distribution to the growing end. In plants, microtubule minus ends are not necessarily severed from the nucleation site and transported to the plus end of a microtubule as part of the recycling process. May play a role in endomembrane organization during polarized growth of plant cells. {ECO:0000269|PubMed:14614826, ECO:0000269|PubMed:20067996}. MISCELLANEOUS: Plant microtubules behave differently from those of other eukaryotes in mitosis: they lack centrosomes and spindles are barrel-shaped with unfocused poles and no astral microtubules. {ECO:0000305|PubMed:18281505}. 31080,32931 Microtubule-associated protein RP/EB family member 1A (APC-binding protein EB1A) (End-binding protein 1A) (AtEB1A) (Protein ATEB1 homolog 2) (AtEB1H2),Microtubule-associated protein RP/EB family member 1B (APC-binding protein EB1B) (End-binding protein 1) (AtEB1) (End-binding protein 1B) (AtEB1B) (Protein ATEB1 homolog 2) (ATEB1H2) cortical microtubule, transverse to long axis [GO:0010005]; microtubule organizing center [GO:0005815]; phragmoplast [GO:0009524]; preprophase band [GO:0009574]; spindle microtubule [GO:0005876]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; thigmotropism [GO:0009652]; viral process [GO:0016032],cortical microtubule, transverse to long axis [GO:0010005]; microtubule [GO:0005874]; microtubule organizing center [GO:0005815]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive gravitropism [GO:0009958]; thigmotropism [GO:0009652] TISSUE SPECIFICITY: Highly expressed in guard cells of leaf stomata, pollen grains and pollen tubes. Expressed in young roots. {ECO:0000269|PubMed:20067996}. locus:2100417;,locus:2154149; AT3G47690,AT5G62500 microtubule-associated protein RP EB family OSJNBa0063C18.9 protein (OSJNBb0079B02.14 protein) (Os04g0642100 protein) (cDNA, clone: J043006P09, full insert sequence) Q7X6S7 Q7X6S7_ORYSJ Os04g0642100 OSJNBa0063C18.9 OSJNBb0079B02.14 OSNPB_040642100 ENOG411DVR2 O81916,A0A1P8ATK3 YC22_ARATH,A0A1P8ATK3_ARATH Uncharacterized calcium-binding protein At1g02270,Calcium-binding endonuclease/exonuclease/phosphatase family 55474,40079 Uncharacterized calcium-binding protein At1g02270,Calcium-binding endonuclease/exonuclease/phosphatase family integral component of membrane [GO:0016021]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; response to cold [GO:0009409],calcium ion binding [GO:0005509]; endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527] locus:2204863; AT1G02270 Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411DVR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENTH Os06g0699800 protein A0A0P0X0S0 A0A0P0X0S0_ORYSJ Os06g0699800 OSNPB_060699800 ENOG411DVR8 NAGS1,NAGS2 Q84JF4,B5X4Z4,F4JS51 NAGS1_ARATH,NAGS2_ARATH,F4JS51_ARATH Probable amino-acid acetyltransferase NAGS1, chloroplastic (EC 2.3.1.1) (N-acetylglutamate synthase 1),Probable amino-acid acetyltransferase NAGS2, chloroplastic (EC 2.3.1.1) (N-acetylglutamate synthase 2),N-acetyl-l-glutamate synthase 2 FUNCTION: N-acetylglutamate synthase involved in arginine biosynthesis. {ECO:0000250}. PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4. ARA:AT2G22910-MONOMER; 2.3.1.1 67179,67395,59045 Probable amino-acid acetyltransferase NAGS1, chloroplastic (EC 2.3.1.1) (N-acetylglutamate synthase 1),Probable amino-acid acetyltransferase NAGS2, chloroplastic (EC 2.3.1.1) (N-acetylglutamate synthase 2),N-acetyl-l-glutamate synthase 2 chloroplast [GO:0009507]; acetyl-CoA:L-glutamate N-acetyltransferase activity [GO:0004042]; arginine biosynthetic process [GO:0006526],cytoplasm [GO:0005737]; acetyl-CoA:L-glutamate N-acetyltransferase activity [GO:0004042]; arginine biosynthetic process [GO:0006526] locus:2059165;,locus:2120130; AT2G22910,AT4G37670 Amino acid kinase family Os03g0431200 protein,Os07g0585600 protein (Fragment) A3AJD2,A0A0P0X853 A3AJD2_ORYSJ,A0A0P0X853_ORYSJ Os03g0431200 OsJ_11367 OSNPB_030431200,Os07g0585600 OSNPB_070585600 ENOG411DVR9 MAG5,SEC16B,MNJ7.8 Q9FGK9,Q9FGK8,A0A1P8BE45,A0A1P8B9X0 MAG5_ARATH,SC16B_ARATH,A0A1P8BE45_ARATH,A0A1P8B9X0_ARATH Protein transport protein SEC16A homolog (Protein MAIGO 5),Protein transport protein SEC16B homolog (Protein MAIGO 5 homolog),RGPR-like protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but dry seeds of mutant plants accumulate the precursors of the two major storage proteins albumin 2S and globulin 12S. {ECO:0000269|PubMed:24280388}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:24280388}. FUNCTION: Required for efficient protein export from the endoplasmic reticulum (ER) to the Golgi by regulating COPII coat dynamics at the ER. Functions as a scaffold and regulator of COPII coat assembly at ER exit sites. {ECO:0000269|PubMed:24280388}.,FUNCTION: Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000303|PubMed:24280388}. 145879,147817,114725,115685 Protein transport protein SEC16A homolog (Protein MAIGO 5),Protein transport protein SEC16B homolog (Protein MAIGO 5 homolog),RGPR-like protein endoplasmic reticulum [GO:0005783]; Golgi membrane [GO:0000139]; Golgi stack [GO:0005795]; COPII vesicle coating [GO:0048208]; protein transport [GO:0015031],endoplasmic reticulum [GO:0005783]; Golgi membrane [GO:0000139]; COPII vesicle coating [GO:0048208]; protein transport [GO:0015031],Golgi membrane [GO:0000139]; COPII vesicle coating [GO:0048208] locus:2168998;,locus:2169008; AT5G47480,AT5G47490 Inherit from KOG: SEC16 homolog B (S. cerevisiae) Os02g0105100 protein (Fragment),Os06g0105600 protein (Fragment),Os02g0105100 protein A0A0P0VDQ1,A0A0P0WRX8,A0A0P0VDY2 A0A0P0VDQ1_ORYSJ,A0A0P0WRX8_ORYSJ,A0A0P0VDY2_ORYSJ Os02g0105100 OSNPB_020105100,Os06g0105600 OSNPB_060105600 ENOG411DVRD NAC028 Q9SRZ8 Q9SRZ8_ARATH F12P19.8 protein (NAC domain containing protein 28) 71908 F12P19.8 protein (NAC domain containing protein 28) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2009729; AT1G65910 (No apical meristem) protein NAC protein (No apical meristem, putative, expressed) (Os03g0119966 protein),Os09g0552900 protein Q8H045,A0A0P0XR04 Q8H045_ORYSJ,A0A0P0XR04_ORYSJ RIM1 LOC_Os03g02800 Os03g0119966 OJ1263H11.11 OsJ_09200 OSNPB_030119966,Os09g0552900 OSNPB_090552900 ENOG411DVRE MQL5.26 F4JX48 F4JX48_ARATH Sphingomyelin phosphodiesterase 97568 Sphingomyelin phosphodiesterase integral component of membrane [GO:0016021] locus:2171534; AT5G47400 Inherit from KOG: domain containing E3 ubiquitin protein ligase Os10g0560500 protein (Fragment) Q0IVP9 Q0IVP9_ORYSJ Os10g0560500 OSNPB_100560500 ENOG411DVRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent protease La (LON) domain ATP-dependent protease La domain containing protein, expressed (Os03g0409100 protein),Os03g0409100 protein Q75K52,Q0DR85 Q75K52_ORYSJ,Q0DR85_ORYSJ Os03g0409100 LOC_Os03g29540 OSJNBb0108E08.1 OSNPB_030409100,Os03g0409100 OSNPB_030409100 ENOG411DVRG Q9FH56 Q9FH56_ARATH Leucine-rich repeat (LRR) family protein (Similarity to elicitor-inducible receptor-like protein) (Uncharacterized protein At5g66330) 45332 Leucine-rich repeat (LRR) family protein (Similarity to elicitor-inducible receptor-like protein) (Uncharacterized protein At5g66330) locus:2155001; AT5G66330 LRR receptor-like serine threonine-protein kinase Os02g0647300 protein (Putative fasciated ear2) (cDNA clone:002-137-G09, full insert sequence) Q6H6X2 Q6H6X2_ORYSJ Os02g0647300 Os02g0647300 OSNPB_020647300 P0519A12.21 ENOG411DVRA MLO4 O23693,A0A1P8APG9 MLO4_ARATH,A0A1P8APG9_ARATH MLO-like protein 4 (AtMlo4),MLO-like protein Tight spiral-like root growth in response to touch-A. Jones-2009 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}.,FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. 65466,49352 MLO-like protein 4 (AtMlo4),MLO-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607],integral component of membrane [GO:0016021]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2197439; AT1G11000 May be involved in modulation of pathogen defense and leaf cell death (By similarity) MLO-like protein B9G9Q1 B9G9Q1_ORYSJ Os11g0181400 MLO OsJ_33191 OSNPB_110181400 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. ENOG411DVRB Q8GYZ0,F4JSP1 Q8GYZ0_ARATH,F4JSP1_ARATH At4g31530 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein At4g31530/F3L17_100),NAD(P)-binding Rossmann-fold superfamily protein 35228,36744 At4g31530 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein At4g31530/F3L17_100),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570] locus:2125289; AT4G31530 NmrA-like family NA NA NA NA NA NA NA ENOG411DVRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0136800 protein (Putative receptor protein kinase CRINKLY4) (cDNA clone:J013129P20, full insert sequence) Q5ZC64 Q5ZC64_ORYSJ Os01g0136800 Os01g0136800 OSNPB_010136800 P0443D08.15 ENOG411DVRM PGRL1A,PGRL1B Q8H112,Q8GYC7,F4JPU9 PGL1A_ARATH,PGL1B_ARATH,F4JPU9_ARATH PGR5-like protein 1A, chloroplastic (Ferredoxin-plastoquinone reductase 1),PGR5-like protein 1B, chloroplastic (Ferredoxin-plastoquinone reductase 2),PGR5-like B DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with PGRL1B. Pgrl1a and pgrl1b double mutant grows slowly and has pale green leaves. {ECO:0000269|PubMed:18243102}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with PGRL1A. Pgrl1a and pgrl1b double mutant grows slowly and has pale green leaves. {ECO:0000269|PubMed:18243102}. Slower growth rate pale green leaves. Impaired in photosynthesis (cyclic electron flow). FUNCTION: Ferredoxin-plastoquinone reductase involved in cyclic electron flow (CEF) around photosystem I. The homodimer is probably not involved in CEF. {ECO:0000269|PubMed:18243102, ECO:0000269|PubMed:23290914}. MISCELLANEOUS: Thioredoxins prevent homodimerization. {ECO:0000305|PubMed:23290914}.,MISCELLANEOUS: Thioredoxins prevent homodimerization. {ECO:0000250}. 35721,34909,33547 PGR5-like protein 1A, chloroplastic (Ferredoxin-plastoquinone reductase 1),PGR5-like protein 1B, chloroplastic (Ferredoxin-plastoquinone reductase 2),PGR5-like B chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; identical protein binding [GO:0042802]; oxidoreductase activity, acting on iron-sulfur proteins as donors [GO:0016730]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979]; photosynthetic electron transport in photosystem I [GO:0009773],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosynthesis [GO:0015979]; photosynthetic electron transport in photosystem I [GO:0009773],integral component of membrane [GO:0016021] locus:2127233;,locus:2118031; AT4G22890,AT4G11960 PGR5-like protein 1A Os08g0526300 protein,Expressed protein (Os03g0857400 protein) (cDNA clone:J013052N16, full insert sequence),Os08g0310500 protein Q7F1E4,Q84M73,A0A0P0XIC4,A0A0P0XE45 Q7F1E4_ORYSJ,Q84M73_ORYSJ,A0A0P0XIC4_ORYSJ,A0A0P0XE45_ORYSJ OJ1191_A10.128 Os08g0526300 OJ1014_E06.2 OSNPB_080526300,Os03g0857400 LOC_Os03g64020 Os03g0857400 OSJNBa0059G06.17 OSNPB_030857400,Os08g0526300 OSNPB_080526300,Os08g0310500 OSNPB_080310500 ENOG411DVRN ATL50,ATL13,ATL49 Q9FHG8,Q940Q4,Q9ZV53 ATL50_ARATH,ATL13_ARATH,ATL49_ARATH Putative RING-H2 finger protein ATL50 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL50),RING-H2 finger protein ATL13 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL13),Putative RING-H2 finger protein ATL49 (EC 2.3.2.27) (Protein MATERNAL EFFECT EMBRYO ARREST 16) (RING-type E3 ubiquitin transferase ATL49) FUNCTION: May be involved in female gametophyte development. {ECO:0000269|PubMed:15634699}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 23524,52339,47287 Putative RING-H2 finger protein ATL50 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL50),RING-H2 finger protein ATL13 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL13),Putative RING-H2 finger protein ATL49 (EC 2.3.2.27) (Protein MATERNAL EFFECT EMBRYO ARREST 16) (RING-type E3 ubiquitin transferase ATL49) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to karrikin [GO:0080167],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; embryo development ending in seed dormancy [GO:0009793]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2172550;,locus:2118666;,locus:2054049; AT5G57750,AT4G30400,AT2G18650 RING-H2 finger protein Os08g0445000 protein (Putative RING finger 1) (cDNA clone:002-118-C12, full insert sequence),Os02g0790600 protein (Putative RING finger 1) (cDNA clone:J033021A14, full insert sequence) Q6Z8P9,Q6KAF1 Q6Z8P9_ORYSJ,Q6KAF1_ORYSJ Os08g0445000 Os08g0445000 OsJ_27500 OSNPB_080445000 P0479C12.18 P0708B04.43,Os02g0790600 Os02g0790600 OJ1046_F07.20 OSNPB_020790600 ENOG411DVRH CHLP Q9CA67 CHLP_ARATH Geranylgeranyl diphosphate reductase, chloroplastic (EC 1.3.1.83) (Geranylgeranyl reductase) FUNCTION: Catalyzes the reduction of geranylgeranyl diphosphate to phytyl diphosphate, providing phytol for both tocopherol and chlorophyll synthesis. {ECO:0000269|PubMed:9492312}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis.; PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis. ARA:AT1G74470-MONOMER;MetaCyc:AT1G74470-MONOMER; 1.3.1.83; Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100),Terpenoid backbone biosynthesis (00900),Porphyrin and chlorophyll metabolism (00860) 1.3.1.83 51838 Geranylgeranyl diphosphate reductase, chloroplastic (EC 1.3.1.83) (Geranylgeranyl reductase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; geranylgeranyl diphosphate reductase activity [GO:0102067]; geranylgeranyl reductase activity [GO:0045550]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979]; vitamin E biosynthetic process [GO:0010189] DEVELOPMENTAL STAGE: Expressed during deetiolation and during chloroplast to chromoplast transformation. {ECO:0000269|PubMed:9492312}. locus:2019165; AT1G74470 geranylgeranyl reductase Geranylgeranyl diphosphate reductase, chloroplastic (EC 1.3.1.83) (Geranylgeranyl reductase) Q6Z2T6 CHLP_ORYSJ CHLP Os02g0744900 LOC_Os02g51080 OJ1118_G04.11 OJ1734_E02.38 OsJ_08361 FUNCTION: Catalyzes the reduction of geranylgeranyl diphosphate to phytyl diphosphate, providing phytol for both tocopherol and chlorophyll synthesis. {ECO:0000250}. ENOG411DVRI DTX18,DTX19,ALF5 Q9LUH3,Q9LUH2,A0A1I9LSV7 DTX18_ARATH,DTX19_ARATH,A0A1I9LSV7_ARATH Protein DETOXIFICATION 18 (AtDTX18) (Multidrug and toxic compound extrusion protein 18) (MATE protein 18) (Protein LIKE ALF5),Protein DETOXIFICATION 19 (AtDTX19) (Multidrug and toxic compound extrusion protein 19) (MATE protein 19) (Protein ABERRANT LATERAL ROOT FORMATION 5),MATE efflux family protein DISRUPTION PHENOTYPE: Aberrant lateral root formation due to hypersensitivity to toxic compounds. {ECO:0000269|PubMed:11449055}. Root growth sensitive to toxic compounds (including one in Bacto agar)-G. Fink-2001 FUNCTION: Required for protection of the roots from inhibitory compounds. When expressed in a heterologous system, confers resistance to tetramethylammonium chloride. {ECO:0000269|PubMed:11449055}. R-ATH-425366; 50792,51852,45249 Protein DETOXIFICATION 18 (AtDTX18) (Multidrug and toxic compound extrusion protein 18) (MATE protein 18) (Protein LIKE ALF5),Protein DETOXIFICATION 19 (AtDTX19) (Multidrug and toxic compound extrusion protein 19) (MATE protein 19) (Protein ABERRANT LATERAL ROOT FORMATION 5),MATE efflux family protein integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; defense response to oomycetes [GO:0002229]; defense response to other organism [GO:0098542]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855]; response to toxic substance [GO:0009636],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] TISSUE SPECIFICITY: Expressed in the root epidermis and cortex. Not expressed in hypocotyl. Detected in the elongation zone of young roots, but not in the meristematic region. {ECO:0000269|PubMed:11449055}. locus:2088010;,locus:2088020; AT3G23550,AT3G23560 Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q6Z493,A0A0P0X1Q4 Q6Z493_ORYSJ,A0A0P0X1Q4_ORYSJ Os07g0502200 Os07g0502200 OSNPB_070502200 P0430F03.2,Os07g0108200 OSNPB_070108200 ENOG411DVRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transcription factor Os09g0558200 protein (cDNA clone:J033136A07, full insert sequence) Q653S1 Q653S1_ORYSJ Os09g0558200 OJ1065_E04.5 OSNPB_090558200 ENOG411DVRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os08g0200500 protein (Fragment) Q0J7D9 Q0J7D9_ORYSJ Os08g0200500 Os08g0200500 OsJ_26374 OSNPB_080200500 ENOG411DVRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein 33-like Os10g0100500 protein (U-box domain containing protein, expressed),Os10g0100500 protein (Fragment) Q33BK6,A0A0P0XQW4 Q33BK6_ORYSJ,A0A0P0XQW4_ORYSJ Os10g0100500 LOC_Os10g01060 Os10g0100500 OSNPB_100100500,Os10g0100500 OSNPB_100100500 ENOG411DVRU O65670,A0A1P8B4M6,A0A1P8B4N7,A0A1P8B4N8 O65670_ARATH,A0A1P8B4M6_ARATH,A0A1P8B4N7_ARATH,A0A1P8B4N8_ARATH At4g39830 (Cupredoxin superfamily protein) (Putative L-ascorbate oxidase),Cupredoxin superfamily protein ARA:AT4G39830-MONOMER; 66154,53630,54908,55183 At4g39830 (Cupredoxin superfamily protein) (Putative L-ascorbate oxidase),Cupredoxin superfamily protein extracellular region [GO:0005576]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722],extracellular region [GO:0005576]; copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491] locus:2135242; AT4G39830 L-ascorbate Os01g0258400 protein,Os09g0365900 protein B9EV18,A0A0P0XMD7 B9EV18_ORYSJ,A0A0P0XMD7_ORYSJ Os01g0258400 OsJ_01163 OSNPB_010258400,Os09g0365900 OSNPB_090365900 ENOG411DVRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Os09g0507300 protein (cDNA clone:002-172-G09, full insert sequence) Q0J0J1 Q0J0J1_ORYSJ Os09g0507300 Os09g0507300 OsJ_29948 OSNPB_090507300 ENOG411DVRW MEX1,RCP1 Q9LF50,A0A1P8BC44,F4KH13 MEX1_ARATH,A0A1P8BC44_ARATH,F4KH13_ARATH Maltose excess protein 1, chloroplastic (Root cap protein 1),Root cap 1 (RCP1),Maltose excess-like protein mex1-1 plants are smaller than wild type plants and have severely reduced chlorophyll levels. Maltose levels in the mutants are 40 times above levels found in wild type seedlings. Starch levels are higher in the mutant plants and they have reduced rates of starch degradation and biosynthesis despite the similar levels of starch metabolic enzyme activity measured in the mutant plants.,Maltose levels are reported to be at least 40 times higher in mex1-2 mutants than in wild type plants. Dwarf; Pale green; Elevated maltose levels-S. Zeeman-2004 FUNCTION: Probable maltose transporter. Essential for the conversion of starch to sucrose in leaves at night, probably via the export of maltose from the chloroplast. Required for root cap cells formation. {ECO:0000269|PubMed:14704427}. MetaCyc:AT5G17520-MONOMER; 45280,39051,28625 Maltose excess protein 1, chloroplastic (Root cap protein 1),Root cap 1 (RCP1),Maltose excess-like protein chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; maltose transmembrane transporter activity [GO:0005363]; carbohydrate metabolic process [GO:0005975]; maltose metabolic process [GO:0000023]; response to nematode [GO:0009624]; starch catabolic process [GO:0005983],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in leaves and roots. Expressed in root cap cells. {ECO:0000269|PubMed:10536027, ECO:0000269|PubMed:14704427}. locus:2157492;,locus:4515103580; AT5G17520,AT5G17523 maltose excess protein Maltose excess protein 1-like, chloroplastic Q7XTQ5 MEX1_ORYSJ Os04g0602400 LOC_Os04g51330 OSJNBa0041A02.13 FUNCTION: Probable maltose transporter. Essential for the conversion of starch to sucrose in leaves at night, probably via the export of maltose from the chloroplast (By similarity). {ECO:0000250}. ENOG411DVRP MLP3.20 Q9FPI0 Q9FPI0_ARATH 3'-5'-exoribonuclease family protein (At3g07750) (Putative 3' exoribonuclease) R-ATH-429958;R-ATH-450604;R-ATH-6791226; 29962 3'-5'-exoribonuclease family protein (At3g07750) (Putative 3' exoribonuclease) cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; AU-rich element binding [GO:0017091]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear mRNA surveillance [GO:0071028]; nuclear polyadenylation-dependent mRNA catabolic process [GO:0071042]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; U1 snRNA 3'-end processing [GO:0034473]; U4 snRNA 3'-end processing [GO:0034475]; U5 snRNA 3'-end processing [GO:0034476] locus:2077522; AT3G07750 Exosome complex 3' exoribonuclease family, domain 1 containing protein, expressed (Os12g0403800 protein) (cDNA clone:002-104-C05, full insert sequence),Os12g0403800 protein Q2QT85,A0A0P0Y9E7 Q2QT85_ORYSJ,A0A0P0Y9E7_ORYSJ Os12g0403800 LOC_Os12g21500 Os12g0403800 OsJ_28497 OSNPB_120403800,Os12g0403800 OSNPB_120403800 ENOG411DVRQ LCBK1 Q9LRB0,A0A1P8BDB5,B3H501 LCBK1_ARATH,A0A1P8BDB5_ARATH,B3H501_ARATH Sphingoid long-chain bases kinase 1 (AtLCBK1) (LCB kinase 1) (EC 2.7.-.-) (Sphingosine kinase 1),Long-chain base (LCB) kinase 1 FUNCTION: Involved in the production of sphingolipid metabolites. Active on sphingosine, phytosphingosine (PHS, 4-hydroxysphinganine), D-erythro-dihydrosphingosine, D-erythro-sphingosine and trans-4, trans-8-sphingadienine, an LCB found exclusively in plants, but not on N-acetyl-dihydrosphingosine (C2-dihydroceramide) and D-threo-dihydrosphingosine. {ECO:0000269|PubMed:15695468}. ARA:AT5G23450-MONOMER; R-ATH-1483206; 2.7.-.- 83592,83324,85379 Sphingoid long-chain bases kinase 1 (AtLCBK1) (LCB kinase 1) (EC 2.7.-.-) (Sphingosine kinase 1),Long-chain base (LCB) kinase 1 ATP binding [GO:0005524]; D-erythro-sphingosine kinase activity [GO:0017050]; NAD+ kinase activity [GO:0003951]; sphingolipid biosynthetic process [GO:0030148],NAD+ kinase activity [GO:0003951],plasma membrane [GO:0005886]; D-erythro-sphingosine kinase activity [GO:0017050]; NAD+ kinase activity [GO:0003951]; sphingolipid biosynthetic process [GO:0030148] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and at higher levels in flowers. {ECO:0000269|PubMed:15695468}. locus:2154448; AT5G23450 sphingoid long-chain bases kinase Os10g0516800 protein (Putative sphingosine kinase) (Sphingosine kinase, putative, expressed),OSJNBb0103I08.5 protein (Os04g0541500 protein) (cDNA clone:J023072I23, full insert sequence) Q7XCS9,Q7XN57 Q7XCS9_ORYSJ,Q7XN57_ORYSJ LOC_Os10g37280 Os10g0516800 OSJNBa0076F20.14 OSNPB_100516800,Os04g0541500 Os04g0541500 OsJ_15633 OSJNBb0103I08.5 OSNPB_040541500 ENOG411DVRR B6EUC2,B3H6G9 B6EUC2_ARATH,B3H6G9_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 35653,37820 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168],cytosol [GO:0005829]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:1006230342; AT4G02405 methyltransferase Os07g0247100 protein Q6YSY5 Q6YSY5_ORYSJ Os07g0247100 OsJ_23703 OSJNBa0003K21.34 OSNPB_070247100 P0639B07.8 ENOG411DVRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os11g0208000 protein) (cDNA clone:002-148-A03, full insert sequence),Os11g0207800 protein (Fragment) Q2R928,A0A0P0XZZ7 Q2R928_ORYSJ,A0A0P0XZZ7_ORYSJ LOC_Os11g10180 Os11g0208000 OSNPB_110208000,Os11g0207800 OSNPB_110207800 ENOG411DVRX ECT4,ECT2 Q94A30,Q9LJE5,A0A1P8AS00,A0A1P8AS03,A0A1P8AS28,F4JDC2,F4JDC3,F4I0C2,F4JDC5,F4I0C1 Q94A30_ARATH,Q9LJE5_ARATH,A0A1P8AS00_ARATH,A0A1P8AS03_ARATH,A0A1P8AS28_ARATH,F4JDC2_ARATH,F4JDC3_ARATH,F4I0C2_ARATH,F4JDC5_ARATH,F4I0C1_ARATH At1g55500/T5A14_10 (Evolutionarily conserved C-terminal region 4),AT3g13460/MRP15_10 (Evolutionarily conserved C-terminal region 2),Evolutionarily conserved C-terminal region 4,Evolutionarily conserved C-terminal region 2 60652,72475,62003,66591,65272,72197,72373,65969,54862,65241 At1g55500/T5A14_10 (Evolutionarily conserved C-terminal region 4),AT3g13460/MRP15_10 (Evolutionarily conserved C-terminal region 2),Evolutionarily conserved C-terminal region 4,Evolutionarily conserved C-terminal region 2 RNA binding [GO:0003723],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729],cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2092815;,locus:2193909; AT1G55500,AT3G13460 YT521-B-like family domain containing protein expressed Os03g0748000 protein (YT521-B-like family protein, expressed),Os03g0158500 protein (YT521-B-like family protein, expressed),Os03g0158500 protein (Fragment),Os03g0748000 protein (Fragment) Q10CW7,Q10RI4,A0A0P0VTA0,A0A0P0VT81,A0A0P0W3F3,A0A0P0VT94 Q10CW7_ORYSJ,Q10RI4_ORYSJ,A0A0P0VTA0_ORYSJ,A0A0P0VT81_ORYSJ,A0A0P0W3F3_ORYSJ,A0A0P0VT94_ORYSJ Os03g0748000 LOC_Os03g53670 Os03g0748000 OsJ_12565 OSNPB_030748000,LOC_Os03g06240 Os03g0158500 OsJ_09476 OSNPB_030158500,Os03g0158500 OSNPB_030158500,Os03g0748000 OSNPB_030748000 ENOG411DVRY Q0WVU7 Q0WVU7_ARATH DNAJ heat shock N-terminal domain-containing protein (Uncharacterized protein At1g65280) 66501 DNAJ heat shock N-terminal domain-containing protein (Uncharacterized protein At1g65280) locus:2206285; AT1G65280 DNAJ heat shock N-terminal domain-containing DNAJ heat shock N-terminal domain-containing protein-like (Os01g0521500 protein) Q5QMD6 Q5QMD6_ORYSJ Os01g0521500 Os01g0521500 OSNPB_010521500 P0516D04.8 ENOG411DVRZ MZN1.18 Q8VXX3 Q8VXX3_ARATH HSP20-like chaperones superfamily protein (Uncharacterized protein At5g58740) 18212 HSP20-like chaperones superfamily protein (Uncharacterized protein At5g58740) cytoplasm [GO:0005737]; unfolded protein binding [GO:0051082]; developmental process [GO:0032502]; protein folding [GO:0006457] locus:2178888; AT5G58740 Nudc domain-containing protein Nuclear movement protein-like (Os01g0668000 protein) (cDNA clone:J033057M08, full insert sequence) Q8W065 Q8W065_ORYSJ P0014E08.4-1 Os01g0668000 OsJ_02949 OSJNBb0063G05.34-1 OSNPB_010668000 ENOG411EFF7 Q5Q0I9 Q5Q0I9_ARATH Uncharacterized protein 13450 Uncharacterized protein locus:2197828; AT1G04670 NA NA NA NA NA NA NA NA ENOG411EFF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Jumonji domain containing NA NA NA NA NA NA NA ENOG411E6R9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0251050 protein,Os02g0311600 protein A0A0N7KN76,A0A0P0VI26 A0A0N7KN76_ORYSJ,A0A0P0VI26_ORYSJ Os07g0251050 OSNPB_070251050,Os02g0311600 OSNPB_020311600 ENOG411E6R8 A0A1P8B2C7 A0A1P8B2C7_ARATH 60S acidic ribosomal protein family 9178 60S acidic ribosomal protein family ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translational elongation [GO:0006414] 60S acidic ribosomal protein Os01g0191100 protein (Putative acidic ribosomal protein P2a-2) (cDNA clone:001-003-F04, full insert sequence),Os02g0529700 protein (Putative 60S acidic ribosomal protein P2A) (cDNA clone:J023042A15, full insert sequence) Q5SNH7,Q6H764 Q5SNH7_ORYSJ,Q6H764_ORYSJ Os01g0191100 Os01g0191100 OsJ_28991 OSNPB_010191100 P0710E05.27,Os02g0529700 OsJ_06990 OSNPB_020529700 P0476H10.25 ENOG411E6R7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0487000 protein (cDNA clone:J033129L23, full insert sequence),Os08g0487000 protein Q6ZCW5,A0A0P0XH74 Q6ZCW5_ORYSJ,A0A0P0XH74_ORYSJ P0028A08.7-1 P0481F05.28-1 Os08g0487000 OsJ_27732 OSNPB_080487000,Os08g0487000 OSNPB_080487000 ENOG411E6R6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0479100 protein A0A0P0YAR1 A0A0P0YAR1_ORYSJ Os12g0479100 OSNPB_120479100 ENOG411E6R4 OFP8 Q3E9B4 OFP8_ARATH Transcription repressor OFP8 (Ovate family protein 8) (AtOFP8) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21886836}. FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP8 show flat, thick and cyan leaves, and enhanced apical dormancy. {ECO:0000305|PubMed:21886836}. 25466 Transcription repressor OFP8 (Ovate family protein 8) (AtOFP8) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2183209; AT5G19650 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E6R3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os08g0338500 protein (cDNA clone:002-132-H09, full insert sequence),Os12g0129100 protein (Pectinesterase inhibitor domain containing protein, expressed),Os11g0132300 protein,Os12g0128900 protein,Os11g0132100 protein (Pectinesterase inhibitor domain containing protein, expressed) Q6ZC83,Q2QY84,B9G982,Q2QY86,Q2RAZ6 Q6ZC83_ORYSJ,Q2QY84_ORYSJ,B9G982_ORYSJ,Q2QY86_ORYSJ,Q2RAZ6_ORYSJ Os08g0338500 Os08g0338500 OSNPB_080338500 P0702G08.13,Os12g0129100 LOC_Os12g03510 OsJ_35102 OSNPB_120129100,Os11g0132300 OsJ_32829 OSNPB_110132300,Os12g0128900 LOC_Os12g03490 OsJ_35100 OSNPB_120128900,Os11g0132100 LOC_Os11g03740 Os11g0132100 OsJ_32828 OSNPB_110132100 ENOG411E6R2 T22K18.16 Q9SR67,B3H7G1 Q9SR67_ARATH,B3H7G1_ARATH AT3g10020/T22K18_16 (Plant/protein) (Uncharacterized protein T22K18.16),Plant/protein 16737,16354 AT3g10020/T22K18_16 (Plant/protein) (Uncharacterized protein T22K18.16),Plant/protein anaerobic respiration [GO:0009061]; response to oxidative stress [GO:0006979] locus:2100123; AT3G10020 NA NA NA NA NA NA NA NA ENOG411E6R1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411E6R0 CURT1D Q8LDD3,A0A1P8B4V5 CUT1D_ARATH,A0A1P8B4V5_ARATH Protein CURVATURE THYLAKOID 1D, chloroplastic,CURVATURE THYLAKOID 1D-like protein DISRUPTION PHENOTYPE: No effect on growth behavior, leaf coloration, grana stacks or photochemical efficiency of photosystem II. Curt1a, curt1b, curt1c and curt1d quadruple mutant shows disorganized thylakoids with extended stretches of unstacked membranes and broader stacks made up of fewer layers. {ECO:0000269|PubMed:23839788}. FUNCTION: Determines thylakoid architecture by inducing membrane curvature. {ECO:0000269|PubMed:23839788}. 21355,17098 Protein CURVATURE THYLAKOID 1D, chloroplastic,CURVATURE THYLAKOID 1D-like protein chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; thylakoid [GO:0009579] locus:2121065; AT4G38100 NA Os09g0465800 protein (cDNA clone:001-107-B07, full insert sequence) Q6YXI0 Q6YXI0_ORYSJ Os09g0465800 Os09g0465800 OJ1005_D12.19 OsJ_29675 OSNPB_090465800 ENOG411E6RN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os08g0552900 protein,Os08g0551900 protein,Os08g0552800 protein,Os11g0160000 protein (Fragment),Os08g0553750 protein Q6Z3I6,Q6Z3H3,Q6Z3I7,A0A0P0Y017,A0A0P0XI74 Q6Z3I6_ORYSJ,Q6Z3H3_ORYSJ,Q6Z3I7_ORYSJ,A0A0P0Y017_ORYSJ,A0A0P0XI74_ORYSJ Os08g0552900 OJ1125_C01.1 OsJ_28221 OSJNBb0011H15.27 OSNPB_080552900,Os08g0551900 OsJ_28210 OSJNBb0011H15.16 OSNPB_080551900,Os08g0552800 OsJ_28220 OSJNBb0011H15.26 OSNPB_080552800,Os11g0160000 OSNPB_110160000,Os08g0553750 OSNPB_080553750 ENOG411E6RJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411E6RG TATA Q9LKU2 TATA_ARATH Sec-independent protein translocase protein TATA, chloroplastic (Protein THYLAKOID ASSEMBLY 4) (Protein TWIN-ARGININE TRANSLOCATION A) FUNCTION: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation (By similarity). {ECO:0000250}. 15713 Sec-independent protein translocase protein TATA, chloroplastic (Protein THYLAKOID ASSEMBLY 4) (Protein TWIN-ARGININE TRANSLOCATION A) chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; TAT protein transport complex [GO:0033281]; protein transporter activity [GO:0008565]; protein secretion [GO:0009306] locus:2184241; AT5G28750 sec-independent protein translocase protein Sec-independent protein translocase protein TATA, chloroplastic (Protein THYLAKOID ASSEMBLY 4) (Protein TWIN-ARGININE TRANSLOCATION A) Q75GK3 TATA_ORYSJ TATA THA4 Os03g0634000 LOC_Os03g43430 OsJ_11824 OSJNBa0010N03.14 FUNCTION: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation. {ECO:0000250|UniProtKB:Q9XFJ8}. ENOG411E6RF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EF hand family protein EF hand family protein (Os11g0143800 protein),Os12g0140050 protein (Fragment) Q2RAN7,A0A0P0Y6T7 Q2RAN7_ORYSJ,A0A0P0Y6T7_ORYSJ Os11g0143800 LOC_Os11g04770 OsJ_32934 OSNPB_110143800,Os12g0140050 OSNPB_120140050 ENOG411E6RE Q8W464 Q8W464_ARATH Ribosomal protein 11433 Ribosomal protein ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2149299; AT5G20180 ribosomal protein NA NA NA NA NA NA NA ENOG411E6RD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0536300 protein A0A0P0YAV9 A0A0P0YAV9_ORYSJ Os12g0536300 OSNPB_120536300 ENOG411E6RB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPM1-interacting protein NA NA NA NA NA NA NA ENOG411E6RZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chaperone protein dnaJ 11 chloroplastic-like NA NA NA NA NA NA NA ENOG411E6RY A0A1P8B531,F4JL66,A0A1P8B528 A0A1P8B531_ARATH,F4JL66_ARATH,A0A1P8B528_ARATH Transmembrane protein 34938,16187,21452 Transmembrane protein integral component of membrane [GO:0016021] locus:2132070; AT4G22370 NA NA NA NA NA NA NA NA ENOG411E6RX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dehydrin Dehydrin Rab16D,Dehydrin Rab16B,Dehydrin Rab16C,Water stress-inducible protein Rab21 Q2R4Z8,Q2R4Z5,Q2R4Z7,Q2R4Z4 DH16D_ORYSJ,DH16B_ORYSJ,DH16C_ORYSJ,DHR21_ORYSJ RAB16D Os11g0453900 LOC_Os11g26750 OsJ_032468,RAB16B Os11g0454200 LOC_Os11g26780 OsJ_032471,RAB16C Os11g0454000 LOC_Os11g26760 OsJ_032469,RAB21 Os11g0454300 LOC_Os11g26790 OsJ_032472 ENOG411E6RW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0822100 protein Q8RUI0 Q8RUI0_ORYSJ Os01g0822100 OSNPB_010822100 P0485B12.21 P0703B11.30 ENOG411E6RV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0227500 protein) (cDNA clone:001-110-H10, full insert sequence),Os03g0227500 protein (Fragment) Q10PN6,A0A0P0VUY9 Q10PN6_ORYSJ,A0A0P0VUY9_ORYSJ Os03g0227500 LOC_Os03g12630 Os03g0227500 OsJ_10002 OSNPB_030227500,Os03g0227500 OSNPB_030227500 ENOG411E6RU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os05g0515800 protein A0A0P0WPI7 A0A0P0WPI7_ORYSJ Os05g0515800 OSNPB_050515800 ENOG411E6RT Q9LYW2 Q9LYW2_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (Uncharacterized protein At5g03230) (Uncharacterized protein F15A17_260) 19004 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (Uncharacterized protein At5g03230) (Uncharacterized protein F15A17_260) locus:2143538; AT5G03230 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E6RS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os03g0832000 protein Q851A4 Q851A4_ORYSJ OSJNBb0027B08.1 Os03g0832000 LOC_Os03g61650 OSJNBa0078D06.26 OSNPB_030832000 ENOG411E6RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0774200 protein (cDNA clone:002-103-G09, full insert sequence) (cDNA clone:J013084M15, full insert sequence) Q6Z7L2 Q6Z7L2_ORYSJ Os02g0774200 Os02g0774200 OJ1448_G06.9 OJ1611_C08.37 OsJ_08562 OSNPB_020774200 ENOG411E6RQ Q9LMI5 Q9LMI5_ARATH At1g06340 (Plant Tudor-like protein) (T2D23.4 protein) 15477 At1g06340 (Plant Tudor-like protein) (T2D23.4 protein) locus:2202295; AT1G06340 Agenet domain NA NA NA NA NA NA NA ENOG411E6RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2CN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant calmodulin-binding domain Expressed protein (Os12g0578300 protein) Q2QN57 Q2QN57_ORYSJ LOC_Os12g38910 Os12g0578300 OsJ_36643 OSNPB_120578300 ENOG411EJKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zein seed storage protein NA NA NA NA NA NA NA ENOG411EF3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF3H Q9ZNU8,A0A1P8AYA3 Q9ZNU8_ARATH,A0A1P8AYA3_ARATH Expressed protein (Uncharacterized protein At2g01400) (Uncharacterized protein At2g01400/F2I9.2),Uncharacterized protein 16154,13529 Expressed protein (Uncharacterized protein At2g01400) (Uncharacterized protein At2g01400/F2I9.2),Uncharacterized protein locus:2038731; AT2G01400 NA NA NA NA NA NA NA NA ENOG411EF3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 ERF domain-containing transcription factor NA NA NA NA NA NA NA ENOG411EF3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EF3B Q9LUD8 Q9LUD8_ARATH AT3g14560/MIE1_6 17739 AT3g14560/MIE1_6 locus:2089556; AT3G14560 NA NA NA NA NA NA NA NA ENOG411EF3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA (By similarity) NA NA NA NA NA NA NA ENOG411ECT0 CRK22,CRK11 Q6NQ87,Q9ZP16,A0A1P8B8H5,A0A1P8B8G3 CRK22_ARATH,CRK11_ARATH,A0A1P8B8H5_ARATH,A0A1P8B8G3_ARATH Cysteine-rich receptor-like protein kinase 22 (Cysteine-rich RLK22) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 11 (Cysteine-rich RLK11) (EC 2.7.11.-) (Receptor-like protein kinase 3),Cysteine-rich RLK (RECEPTOR-like protein kinase) 11 2.7.11.- 73849,74139,65536,64511 Cysteine-rich receptor-like protein kinase 22 (Cysteine-rich RLK22) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 11 (Cysteine-rich RLK11) (EC 2.7.11.-) (Receptor-like protein kinase 3),Cysteine-rich RLK (RECEPTOR-like protein kinase) 11 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium, incompatible interaction [GO:0009816]; protein phosphorylation [GO:0006468]; response to oxidative stress [GO:0006979],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Detected in root, stem, leaf and flower. {ECO:0000269|PubMed:10377997}. locus:2121711;,locus:2121691; AT4G23300,AT4G23190 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ECT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DNA_pol_B_exo NA NA NA NA NA NA NA ENOG411ECT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411ECT3 Q0WR05,Q6DR13,Q9SN41,A0A1P8AZ37,F4K1I5 FBL39_ARATH,FBL38_ARATH,Q9SN41_ARATH,A0A1P8AZ37_ARATH,F4K1I5_ARATH F-box/LRR-repeat protein At2g42730,F-box/LRR-repeat protein At2g42720,Transcription factor IIS protein (Uncharacterized protein AT4g18720) (Uncharacterized protein F28A21.130),Transcription factor,Transcription factor IIS protein 51587,50731,30801,28067,26603 F-box/LRR-repeat protein At2g42730,F-box/LRR-repeat protein At2g42720,Transcription factor IIS protein (Uncharacterized protein AT4g18720) (Uncharacterized protein F28A21.130),Transcription factor,Transcription factor IIS protein nucleus [GO:0005634]; transcription, DNA-templated [GO:0006351] locus:2052362;,locus:2124097;,locus:504954948; AT2G42730,AT2G42720,AT4G18720,AT5G42325 at2g42730 (e NA NA NA NA NA NA NA ENOG411ECT4 Q9LM63,A0A1P8AVA9,A0A1P8AV74,F4HR18,F4HPD5 FDL5_ARATH,A0A1P8AVA9_ARATH,A0A1P8AV74_ARATH,F4HR18_ARATH,F4HPD5_ARATH Putative F-box/FBD/LRR-repeat protein At1g22000,FBD, F-box and Leucine Rich Repeat domains containing protein,FBD domain family 53249,42451,35073,48099,12548 Putative F-box/FBD/LRR-repeat protein At1g22000,FBD, F-box and Leucine Rich Repeat domains containing protein,FBD domain family locus:2202780;,locus:5019474622; AT1G22000,AT1G26890,AT1G26815 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411ECT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411ECT6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os04g0206000 protein (Fragment) Q7XWK2,A0A0P0W7E9,A0A0N7KIN3 Q7XWK2_ORYSJ,A0A0P0W7E9_ORYSJ,A0A0N7KIN3_ORYSJ Os04g0206700 OSJNBa0052O21.16 OSNPB_040206700,Os04g0206700 OSNPB_040206700,Os04g0206000 OSNPB_040206000 ENOG411ECT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Choline/ethanolamine kinase NA NA NA NA NA NA NA ENOG411ECT8 F4J048 F4J048_ARATH Uncharacterized protein 35811 Uncharacterized protein locus:2093910; AT3G15910 NA NA NA NA NA NA NA NA ENOG411ECT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os08g0150600 protein,Os08g0150500 protein A0A0P0XBZ2,A0A0P0XBN6 A0A0P0XBZ2_ORYSJ,A0A0P0XBN6_ORYSJ Os08g0150600 OSNPB_080150600,Os08g0150500 OSNPB_080150500 ENOG411ECTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Strictosidine synthase NA NA NA NA NA NA NA ENOG411ECTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3594) NA NA NA NA NA NA NA ENOG411ECTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECTD Q9SZ03 Q9SZ03_ARATH At4g34380 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein AT4g34380) (Uncharacterized protein At4g34380/F10M10_150) 54305 At4g34380 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein AT4g34380) (Uncharacterized protein At4g34380/F10M10_150) locus:2116194; AT4G34380 Transducin family protein WD-40 repeat family NA NA NA NA NA NA NA ENOG411ECTF TOE3 Q9FH95,A0A1P8BFY4,A0A1P8BG04,A0A1P8BFZ3 TOE3_ARATH,A0A1P8BFY4_ARATH,A0A1P8BG04_ARATH,A0A1P8BFZ3_ARATH AP2-like ethylene-responsive transcription factor TOE3 (Protein TARGET OF EAT 3),Target of early activation tagged (EAT) 3 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. 39594,31706,33775,29078 AP2-like ethylene-responsive transcription factor TOE3 (Protein TARGET OF EAT 3),Target of early activation tagged (EAT) 3 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] locus:2155598; AT5G67180 AP2 NA NA NA NA NA NA NA ENOG411ECTG A_TM018A10.12 Q8VZ38,F4JI18 Q8VZ38_ARATH,F4JI18_ARATH TRAF-like family protein (Uncharacterized protein At4g00780),TRAF-like family protein 34323,34272 TRAF-like family protein (Uncharacterized protein At4g00780),TRAF-like family protein cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2134563;,locus:2124973; AT4G00780,AT4G01390 MATH domain NA NA NA NA NA NA NA ENOG411ECTH PIRL2 Q9LRV8 PIRL2_ARATH Plant intracellular Ras-group-related LRR protein 2 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. 52596 Plant intracellular Ras-group-related LRR protein 2 TISSUE SPECIFICITY: Widely expressed but preferentially in roots. {ECO:0000269|PubMed:15809230}. locus:2088807; AT3G26500 LRR_TYP NA NA NA NA NA NA NA ENOG411ECTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mycoplasma protein of unknown function DUF285 NA NA NA NA NA NA NA ENOG411ECTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411ECTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family Os02g0728800 protein A0A0P0VNY2 A0A0P0VNY2_ORYSJ Os02g0728800 OSNPB_020728800 ENOG411ECTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0615500 protein (cDNA clone:J013170D14, full insert sequence),Os02g0615500 protein (Fragment) Q6K7X3,A0A0P0VLL4 Q6K7X3_ORYSJ,A0A0P0VLL4_ORYSJ P0407A09.27-1 Os02g0615500 OSNPB_020615500,Os02g0615500 OSNPB_020615500 ENOG411ECTN Q9LW19,Q8L7B9,B9DFW5 Q9LW19_ARATH,Q8L7B9_ARATH,B9DFW5_ARATH Hydroxyproline-rich glycoprotein family protein,Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At3g26910),AT3G26910 protein (Hydroxyproline-rich glycoprotein family protein) 69061,67588,68221 Hydroxyproline-rich glycoprotein family protein,Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At3g26910),AT3G26910 protein (Hydroxyproline-rich glycoprotein family protein) locus:2088389; AT3G26910 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411ECTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411ECTQ EXT1,EXT3 Q38913,Q9FS16 EXTN1_ARATH,EXTN3_ARATH Extensin-1 (AtExt1) (AtExt4) (Extensin-1/4),Extensin-3 (AtExt3) (AtExt5) (Extensin-3/5) (Protein ROOT-SHOOT-HYPOCOTYL-DEFECTIVE) DISRUPTION PHENOTYPE: Embryo lethality. Germination-defective agravitropic seedlings with severely defective root, shoot, and hypocotyl and a vitreous appearance throughout (PubMed:12034904). Defective Cell Walls (PubMed:18256186). {ECO:0000269|PubMed:12034904, ECO:0000269|PubMed:18256186}. Embryo and seedling defective-M. Cannon-2002 FUNCTION: Structural component which strengthens the primary cell wall.,FUNCTION: Structural component which strengthens the primary cell wall (PubMed:11475326). Forms dendritic structures indicating a propensity for self-assembly through tyrosine cross-linking (PubMed:18256186, PubMed:21415277). Forms intermolecular cross-links exclusively by pulcherosine (three Tyr) (PubMed:18256186). Scaffold formation requires an unobstructed C-terminus of EXT3 (PubMed:18256186). Required for the correct positioning of the cell plate during cytokinesis in cells of the developing embryo (PubMed:12034904). Extensins contain a characteristic repeat of the pentapeptide Ser-Pro(4). For this particular extensin, a typical repeat of Ser-Pro(3) is found (PubMed:11475326). {ECO:0000269|PubMed:11475326, ECO:0000269|PubMed:12034904, ECO:0000269|PubMed:18256186, ECO:0000269|PubMed:21415277}. 41555,49176 Extensin-1 (AtExt1) (AtExt4) (Extensin-1/4),Extensin-3 (AtExt3) (AtExt5) (Extensin-3/5) (Protein ROOT-SHOOT-HYPOCOTYL-DEFECTIVE) extracellular region [GO:0005576]; primary cell wall [GO:0009530]; structural constituent of cell wall [GO:0005199]; plant-type cell wall organization [GO:0009664]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611],extracellular region [GO:0005576]; primary cell wall [GO:0009530]; structural constituent of cell wall [GO:0005199]; plant-type cell wall organization [GO:0009664] DEVELOPMENTAL STAGE: Early expressed in the whole plant. Detected in the leaves of 2 and 4 weeks old rosettes, but not in 6-weeks-old rosettes. Detected specifically in roots from the mature plant (6-weeks old).,DEVELOPMENTAL STAGE: Early expressed in the whole plant, but was restricted to lower stems, flower buds and roots in the mature plant (6 weeks old) (PubMed:11475326). Detected in cells throughout the embryo, including the suspensor, from the 32-cell stage, with expression increasing up to the torpedo stage, followed by a decrease at the bent-cotyledon stage, with little or no expression detectable in the nearly mature cotyledon stage of development (PubMed:12034904). {ECO:0000269|PubMed:11475326, ECO:0000269|PubMed:12034904}. TISSUE SPECIFICITY: Predominantly expressed in the roots. Not detected in the leaves, nor in flowers or flower buds. Wounding reverses this pattern, turning on the gene in the leaves and repressing it in the roots.,TISSUE SPECIFICITY: Predominantly expressed in the roots. {ECO:0000269|PubMed:11475326}. locus:2025262;,locus:2014947; AT1G76930,AT1G21310 Extensin-like region NA NA NA NA NA NA NA ENOG411ECTR AP22.62 Q8GWJ1 Q8GWJ1_ARATH Galactose oxidase/kelch repeat superfamily protein (Uncharacterized protein At4g36840/C7A10_520) 27002 Galactose oxidase/kelch repeat superfamily protein (Uncharacterized protein At4g36840/C7A10_520) locus:2115360; AT4G36840 Kelch motif NA NA NA NA NA NA NA ENOG411ECTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECTT FBL19 Q9M096 FBL19_ARATH Putative F-box/LRR-repeat protein 19 34304 Putative F-box/LRR-repeat protein 19 locus:2118736; AT4G30640 LRR NA NA NA NA NA NA NA ENOG411ECTU A0A1P8B3B7,F4JKZ3,B3H723 A0A1P8B3B7_ARATH,F4JKZ3_ARATH,B3H723_ARATH Cysteine/Histidine-rich C1 domain family protein 58841,61997,73920 Cysteine/Histidine-rich C1 domain family protein intracellular [GO:0005622]; intracellular signal transduction [GO:0035556] locus:1006230332;,locus:4515103389; AT4G16015,AT4G13992 domain-containing protein NA NA NA NA NA NA NA ENOG411ECTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411ECTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ECTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECTZ RPK1 Q9ZRF9 RPK1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RPK1 (EC 2.7.11.1) (Protein TOADSTOOL 1) (Receptor-like protein kinase 1) DISRUPTION PHENOTYPE: Decreased sensitivity to ABA during germination, growth, and stomatal closure. Impaired central domain protoderm patterning defects, and defective cotyledon primordia cell types. {ECO:0000269|PubMed:15772289, ECO:0000269|PubMed:18158146}. Insensitive to ABA-K. Yamaguchi-Shinozaki-2005 FUNCTION: Involved in the main abscisic acid-mediated (ABA) signaling pathway and in early ABA perception. Together with RPK2, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis). {ECO:0000269|PubMed:15772289, ECO:0000269|PubMed:17543866, ECO:0000269|PubMed:18158146}. 2.7.11.1 59742 Probable LRR receptor-like serine/threonine-protein kinase RPK1 (EC 2.7.11.1) (Protein TOADSTOOL 1) (Receptor-like protein kinase 1) integral component of membrane [GO:0016021]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; signal transducer, downstream of receptor, with serine/threonine kinase activity [GO:0004702]; abscisic acid-activated signaling pathway [GO:0009738]; embryonic meristem development [GO:0048508]; longitudinal axis specification [GO:0009942]; radial axis specification [GO:0009945]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] DEVELOPMENTAL STAGE: First detected in the suspensor cells of octant-stage embryos, in the basal plasma membrane of the basal-most cell of the suspensor, which is in direct contact with maternal tissue. Expressed in the central domain protodermal cells when cotyledon primordia become recognizable. Later observed throughout the central domain and basal domain of the embryo proper, as well as the suspensor. {ECO:0000269|PubMed:17543866, ECO:0000269|PubMed:18158146}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, and flowers. {ECO:0000269|PubMed:9112773}. locus:2026408; AT1G69270 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EHGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0502033 protein (Fragment),Os08g0524501 protein (Fragment),Os09g0501150 protein (Fragment) A0A0P0XNR7,A0A0P0XI39,A0A0P0XNR4 A0A0P0XNR7_ORYSJ,A0A0P0XI39_ORYSJ,A0A0P0XNR4_ORYSJ Os09g0502033 OSNPB_090502033,Os08g0524501 OSNPB_080524501,Os09g0501150 OSNPB_090501150 ENOG411EHGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0144100 protein Q5VQ74 Q5VQ74_ORYSJ Os06g0144100 OsJ_20101 OSJNBa0007O20.10 OSNPB_060144100 ENOG411EHGE AGL63 Q9SA07 AGL63_ARATH Agamous-like MADS-box protein AGL63 (Protein GORDITA) The only change in phenotype observed was a significant bending of fruits suggesting asymmetrically longitudinal growth without any alteration in the fruit length. Bent siliques-A. Becker-2010 FUNCTION: Probable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}. MISCELLANEOUS: Plants over-expressing AGL63 are dwarf, have few rosette leaves with a curly-leaf phenotype, and display small disorganized floral structures and addition of carpel-like, resulting in small abnormal siliques with few seed production. {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091}. 25175 Agamous-like MADS-box protein AGL63 (Protein GORDITA) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; fruit development [GO:0010154]; fruit morphogenesis [GO:0048530]; integument development [GO:0080060]; negative regulation of cell growth [GO:0030308]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expresssed in bud pedicels, petals, anthers, style, ovary, seeds and embryos. {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091}. locus:2029539; AT1G31140 K-box region NA NA NA NA NA NA NA ENOG411EHGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411DWMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbonic anhydrase NA NA NA NA NA NA NA ENOG411DWMU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DJ-1/PfpI family Os01g0217500 protein (Putative 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme) (cDNA clone:001-113-B10, full insert sequence) Q5QNF2 Q5QNF2_ORYSJ Os01g0217500 Os01g0217500 OSNPB_010217500 P0665D10.9 ENOG411DWMV Q1JPN1,A0A1I9LQL6,F4J0D4 Q1JPN1_ARATH,A0A1I9LQL6_ARATH,F4J0D4_ARATH At3g28700 (NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185)),NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) FUNCTION: Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). {ECO:0000256|RuleBase:RU364114}. R-ATH-6799198; 51980,41349,52234 At3g28700 (NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185)),NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) zinc ion binding [GO:0008270],mitochondrion [GO:0005739]; ATP metabolic process [GO:0046034]; mitochondrial respiratory chain complex I assembly [GO:0032981] locus:2095527; AT3G28700 Pfam:DUF185 Protein arginine methyltransferase NDUFAF7 (EC 2.1.1.320) Q5ZC77 Q5ZC77_ORYSJ Os01g0588800 Os01g0588800 OsJ_02410 OSNPB_010588800 P0415C01.2 FUNCTION: Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). {ECO:0000256|RuleBase:RU364114}. ENOG411DWMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Cytochrome p450 NA NA NA NA NA NA NA ENOG411DWMP ATG11 Q9SUG7 ATG11_ARATH Autophagy-related protein 11 DISRUPTION PHENOTYPE: Mutant plants are hypersensitive to nitrogen or carbon starvation and show early senescence. {ECO:0000269|PubMed:24563201}. FUNCTION: Accessory protein involved in autophagy. Acts as scaffold protein of the ATG1-ATG13 complex for faithful delivery of autophagic vesicles to the vacuole. Involved in the stress-induced phosphorylation of ATG1A for turnover of ATG1-ATG13 complex and proper ATG1-ATG13 complex assembly or activity. Required for selective mitophagy. Required for senescence-induced breakdown of mitochondria-resident proteins and mitochondrial vesicles. Seems not essential for ATG8-mediated autophagy. {ECO:0000269|PubMed:24563201}. 129184 Autophagy-related protein 11 ATG1/ULK1 kinase complex [GO:1990316]; autophagosome [GO:0005776]; cytoplasmic vesicle [GO:0031410]; plasmodesma [GO:0009506]; pre-autophagosomal structure membrane [GO:0034045]; protein complex scaffold activity [GO:0032947]; protein homodimerization activity [GO:0042803]; protein kinase binding [GO:0019901]; autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; glycophagy [GO:0061723]; leaf senescence [GO:0010150]; pexophagy [GO:0030242]; positive regulation of protein phosphorylation [GO:0001934]; protein transport [GO:0015031]; reticulophagy [GO:0061709] locus:2131944; AT4G30790 Autophagy-related protein 11 Os02g0179800 protein Q6ETK7 Q6ETK7_ORYSJ P0544B02.28 Os02g0179800 OSNPB_020179800 ENOG411DWMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0496 protein Putative UPF0496 protein 2,Os06g0721900 protein (Os06g0723650 protein) Q5Z8N6,A0A0P0X1L4 U496B_ORYSJ,A0A0P0X1L4_ORYSJ Os06g0718300 LOC_Os06g50410 OJ1540_H01.15 P0541C02.23,Os06g0721900 Os06g0723650 OSNPB_060721900 OSNPB_060723650 ENOG411DWMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0160200 protein (cDNA clone:J033096F04, full insert sequence),Os04g0349700 protein (Fragment),Os01g0167000 protein Q0JQH5,Q0JDZ5,A0A0P0UYT6 Q0JQH5_ORYSJ,Q0JDZ5_ORYSJ,A0A0P0UYT6_ORYSJ Os01g0160200 Os01g0160200 OSNPB_010160200,Os04g0349700 Os04g0349700 OSNPB_040349700,Os01g0167000 OSNPB_010167000 ENOG411DWMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain-containing protein 1A-like Os07g0491600 protein (Fragment) A0A0P0X677 A0A0P0X677_ORYSJ Os07g0491600 OSNPB_070491600 ENOG411DWMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS family transcription factor containing protein Os12g0138200 protein,Os11g0141700 protein A0A0N7KTJ8,A0A0P0XYX6 A0A0N7KTJ8_ORYSJ,A0A0P0XYX6_ORYSJ Os12g0138200 OSNPB_120138200,Os11g0141700 OSNPB_110141700 ENOG411DWMY CSTF50 Q8L4J2 CTF50_ARATH Cleavage stimulation factor subunit 50 (AtCstF-50) (AtCstF50) (CF-1 50 kDa subunit) (Cleavage stimulation factor 50 kDa subunit) (CSTF 50 kDa subunit) FUNCTION: One of the multiple factors required for polyadenylation and 3'-end cleavage of pre-mRNAs. May be responsible for the interaction of CSTF with other factors to form a stable complex on the pre-mRNA. {ECO:0000250|UniProtKB:Q05048}. R-ATH-72163;R-ATH-77595; 47065 Cleavage stimulation factor subunit 50 (AtCstF-50) (AtCstF50) (CF-1 50 kDa subunit) (Cleavage stimulation factor 50 kDa subunit) (CSTF 50 kDa subunit) nucleus [GO:0005634]; mRNA processing [GO:0006397] locus:2173542; AT5G60940 cleavage stimulation factor 36I5.2 (Cleavage stimulation factor, 50 kDa subunit, putative, expressed) (Os03g0754900 protein) (Putative cleavage stimulation factor (Having alternative splicing products)),Os03g0754900 protein Q9FNU4,A0A0P0W379 Q9FNU4_ORYSJ,A0A0P0W379_ORYSJ OSJNBb0081K01.21 Os03g0754900 LOC_Os03g54770 OSNPB_030754900,Os03g0754900 OSNPB_030754900 ENOG411DWMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein Dom3z homolog Os05g0392100 protein (cDNA clone:J013090A11, full insert sequence) Q60ES2 Q60ES2_ORYSJ Os05g0392100 OJ1764_D01.10 OSNPB_050392100 ENOG411DWMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Os05g0466100 protein (cDNA clone:002-148-B09, full insert sequence) Q6I5J7 Q6I5J7_ORYSJ Os05g0466100 Os05g0466100 OJ1387_F08.4 OsJ_18845 OSJNBa0009E21.8 OSNPB_050466100 ENOG411DWME O82662 SUCB_ARATH Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase beta chain) (SCS-beta) FUNCTION: Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. {ECO:0000255|HAMAP-Rule:MF_03219}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1. {ECO:0000255|HAMAP-Rule:MF_03219}. ARA:AT2G20420-MONOMER; R-ATH-71403; 6.2.1.5 45346 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase beta chain) (SCS-beta) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; succinate-CoA ligase (ADP-forming) activity [GO:0004775]; response to cadmium ion [GO:0046686]; tricarboxylic acid cycle [GO:0006099] locus:2039037; AT2G20420 Succinyl-CoA ligase Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase beta chain) (SCS-beta) Q6K9N6 SUCB_ORYSJ Os02g0621700 LOC_Os02g40830 OJ1234_B11.18 OsJ_07569 FUNCTION: Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. {ECO:0000255|HAMAP-Rule:MF_03219}. ENOG411DWMF O82354 O82354_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At2g46150) (Uncharacterized protein At2g46150/T3F17.20) 24096 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At2g46150) (Uncharacterized protein At2g46150/T3F17.20) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2062917; AT2G46150 harpin-induced protein 1 domain containing protein expressed Os01g0736500 protein (Fragment) A0A0P0V7X3 A0A0P0V7X3_ORYSJ Os01g0736500 OSNPB_010736500 ENOG411DWMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os09g0467300 protein (Putative purine permease),Os09g0467300 protein (cDNA clone:001-116-G01, full insert sequence) Q6YXG6,B7E8P8 Q6YXG6_ORYSJ,B7E8P8_ORYSJ OJ1005_D12.40-1 P0676H02.2-1 Os09g0467300 OSNPB_090467300,Os09g0467300 OSNPB_090467300 ENOG411DWMA Y3IP1 Q9LU01 Y3IP1_ARATH Ycf3-interacting protein 1, chloroplastic (Protein CHLOROPLAST ENHANCING STRESS TOLERANCE) (AtCEST) FUNCTION: Nuclear genome-encoded factor that participates in photosystem I (PSI) biogenesis. Cooperates with the plastid genome-encoded protein PSI assembly Ycf3 in the assembly of stable PSI units in the thylakoid membrane (PubMed:20807881). Involved in light-induced chloroplast development and growth. Involved in the plant response to abiotic and photooxidative stresses. May be involved in the suppression of photooxidative damage (PubMed:20876334). {ECO:0000269|PubMed:20807881, ECO:0000269|PubMed:20876334}. MISCELLANEOUS: Plants silencing Y3IP1 can grow autotrophically on soil, but show a light-green phenotype, very slow growth and delayed development (PubMed:20807881, PubMed:20876334). Plants over-expressing Y3IP1 show enhanced resistance to salt, drought and heat stresses, and treatment with paraquat (PubMed:20876334). {ECO:0000269|PubMed:20807881, ECO:0000269|PubMed:20876334}. 31816 Ycf3-interacting protein 1, chloroplastic (Protein CHLOROPLAST ENHANCING STRESS TOLERANCE) (AtCEST) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; chloroplast organization [GO:0009658]; heat acclimation [GO:0010286]; hyperosmotic salinity response [GO:0042538]; photosystem I assembly [GO:0048564]; response to photooxidative stress [GO:0080183]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in cotyledons, rosette and cauline leaves, stems and sepals. {ECO:0000269|PubMed:20876334}. locus:2152165; AT5G44650 NA Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic (OsCEST),Os01g0798500 protein,Os01g0798600 protein Q5VQK9,Q5VQL0,B9ETQ8 CEST_ORYSJ,Q5VQL0_ORYSJ,B9ETQ8_ORYSJ CEST Os01g0798500 LOC_Os01g58470 OsJ_03754 P0691E06.11-1,P0691E06.11-2 Os01g0798500 OSNPB_010798500,Os01g0798600 OsJ_03755 OSNPB_010798600 FUNCTION: Involved in light-induced chloroplast development and growth. Involved in the plant response to abiotic and photooxidative stresses. May be involved in the suppression of photooxidative damage. {ECO:0000269|PubMed:20876334}. ENOG411DWMB RABH1A,RABH1B,RABH1E,RABH1a Q9LV79,O80501,Q9LFT9,F4KGG4 RAH1A_ARATH,RAH1B_ARATH,RAH1E_ARATH,F4KGG4_ARATH Ras-related protein RABH1a (AtRABH1a),Ras-related protein RABH1b (AtRABH1b) (Ras-related protein Rab6A) (AtRab6A),Ras-related protein RABH1e (AtRABH1e),RAB GTPase homolog H1A FUNCTION: Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity). {ECO:0000250}.,FUNCTION: Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Binds GTP and GDP and possesses intrinsic GTPase activity (By similarity). {ECO:0000250}. R-ATH-6798695;R-ATH-6811438;R-ATH-8854214; 23120,23130,23133,23910 Ras-related protein RABH1a (AtRABH1a),Ras-related protein RABH1b (AtRABH1b) (Ras-related protein Rab6A) (AtRab6A),Ras-related protein RABH1e (AtRABH1e),RAB GTPase homolog H1A cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],cytosol [GO:0005829]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:8159788}. locus:2042321;,locus:2145392;,locus:2177664; AT5G64990,AT2G44610,AT5G10260 ras-related protein GTP-binding protein Rab6 (Os07g0496000 protein) Q8H4Q9 Q8H4Q9_ORYSJ OJ1457_D07.114 Os07g0496000 OSNPB_070496000 ENOG411DWMC Q8RX89 Q8RX89_ARATH AT5g23390/T32G24_2 (Polygalacturonase inhibitor (DUF639)) 81779 AT5g23390/T32G24_2 (Polygalacturonase inhibitor (DUF639)) integral component of membrane [GO:0016021] locus:2184327; AT5G23390 expressed protein Os04g0677400 protein,Os02g0637800 protein (cDNA clone:J023128H23, full insert sequence),OSJNBa0060D06.2 protein (OSJNBb0059K02.21 protein) (Os04g0652101 protein),Os06g0670900 protein,Os02g0637800 protein Q0J909,Q6H5V9,Q7X635,A0A0P0WZU6,A0A0P0VM94 Q0J909_ORYSJ,Q6H5V9_ORYSJ,Q7X635_ORYSJ,A0A0P0WZU6_ORYSJ,A0A0P0VM94_ORYSJ Os04g0677400 Os04g0677400 OSNPB_040677400,OJ1581_H09.29-1 Os02g0637800 OsJ_07658 OSJNBa0014E22.23-1 OSNPB_020637800,Os04g0652101 OsJ_22323 OSJNBa0060D06.2 OSJNBb0059K02.21 OSNPB_040652101,Os06g0670900 OSNPB_060670900,Os02g0637800 OSNPB_020637800 ENOG411DWMM F4K9G6,A0A1P8BDS4 F4K9G6_ARATH,A0A1P8BDS4_ARATH Influenza virus NS1A-binding protein R-ATH-4641258;R-ATH-5689880;R-ATH-8951664; 72558,57055 Influenza virus NS1A-binding protein Cul3-RING ubiquitin ligase complex [GO:0031463]; protein ubiquitination [GO:0016567] locus:2149835; AT5G01660 DCD Os01g0165200 protein (Putative Kelch-like protein 5) (cDNA clone:J013070N02, full insert sequence),Os07g0540366 protein (Fragment),Os05g0164900 protein (Fragment),Os01g0165200 protein (Fragment) Q5VQH0,A0A0P0X770,A0A0P0WIM6,A0A0P0UZ00 Q5VQH0_ORYSJ,A0A0P0X770_ORYSJ,A0A0P0WIM6_ORYSJ,A0A0P0UZ00_ORYSJ P0701D05.9-1 Os01g0165200 OSNPB_010165200,Os07g0540366 OSNPB_070540366,Os05g0164900 OSNPB_050164900,Os01g0165200 OSNPB_010165200 ENOG411DWMN MXC20.3 A0A1P8BHH4,F4KHP4 A0A1P8BHH4_ARATH,F4KHP4_ARATH LIM domain protein 80284,106653 LIM domain protein nucleus [GO:0005634]; DNA replication [GO:0006260]; mitotic DNA replication checkpoint [GO:0033314]; response to ionizing radiation [GO:0010212] locus:2176862; AT5G52950 NA Os01g0222300 protein (cDNA clone:002-105-D07, full insert sequence) Q5NB41 Q5NB41_ORYSJ Os01g0222300 Os01g0222300 OSNPB_010222300 P0443E05.11 ENOG411DWMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase small domain Protein-lysine N-methyltransferase OsJ_00177 (EC 2.1.1.-),Os01g0121100 protein (Fragment) Q5ZEM9,Q0JR41 Q5ZEM9_ORYSJ,Q0JR41_ORYSJ P0684C01.7-1 Os01g0121100 OsJ_00177 OSNPB_010121100,Os01g0121100 Os01g0121100 OSNPB_010121100 FUNCTION: S-adenosyl-L-methionine-dependent protein-lysine N-methyltransferase that methylates elongation factor 1-alpha. {ECO:0000256|HAMAP-Rule:MF_03188}. ENOG411DWMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA primase large DNA primase large subunit (EC 2.7.7.-),Os07g0406800 protein Q69PX2,A0A0N7KNA8 Q69PX2_ORYSJ,A0A0N7KNA8_ORYSJ P0613B07.147-1 OJ1723_B06.102-1 Os07g0406800 OsJ_23920 OSNPB_070406800,Os07g0406800 OSNPB_070406800 FUNCTION: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication. {ECO:0000256|PIRNR:PIRNR009449}. ENOG411DWMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Transcription factor BHLH062 (Basic helix-loop-helix protein 1) (OsbHLH1) (Basic helix-loop-helix protein 62) (OsbHLH062) (bHLH transcription factor bHLH062),Os08g0494375 protein Q69V10,A0A0N7KQ27 BH062_ORYSJ,A0A0N7KQ27_ORYSJ BHLH062 BHLH1 Os07g0628500 LOC_Os07g43530 OsJ_25221 P0011H09.105 P0506F02.119,Os08g0494375 OSNPB_080494375 FUNCTION: Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. ENOG411DWMK F4JNS8 F4JNS8_ARATH Regulator of Vps4 activity in the MVB pathway protein R-ATH-6798695; 52199 Regulator of Vps4 activity in the MVB pathway protein mitochondrion [GO:0005739]; protein transport [GO:0015031] locus:2127988; AT4G35730 Regulator of Vps4 activity in the MVB pathway Os09g0547200 protein (cDNA clone:002-104-D03, full insert sequence) (cDNA clone:J033016L03, full insert sequence) Q0IZV3 Q0IZV3_ORYSJ Os09g0547200 Os09g0547200 OSNPB_090547200 ENOG411DWM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411DWM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prephenate dehydratase Os10g0523700 protein (Prephenate dehydratase family protein, expressed) (Putative chorismate mutase/prephenate dehydratase) (cDNA clone:J013110M24, full insert sequence) Q8H0A1 Q8H0A1_ORYSJ Os10g0523700 LOC_Os10g37980 Os10g0523700 OSNPB_100523700 ENOG411DWM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-galactosidase Beta-galactosidase 9 (Lactase 9) (EC 3.2.1.23),Os06g0573600 protein (Fragment) Q5Z7L0,A0A0P0WY55,A0A0P0WYA9 BGAL9_ORYSJ,A0A0P0WY55_ORYSJ,A0A0P0WYA9_ORYSJ Os06g0573600 LOC_Os06g37560 OSJNBa0006A22.31-1,Os06g0573600 OSNPB_060573600 ENOG411DWM7 MEF14 Q9LW33,Q94BZ6 Q9LW33_ARATH,Q94BZ6_ARATH Phosphoglycerate mutase family protein (Uncharacterized protein At3g26780/MDJ14_6),At1g12850/F13K23_8 (Phosphoglycerate mutase family protein) 44321,44860 Phosphoglycerate mutase family protein (Uncharacterized protein At3g26780/MDJ14_6),At1g12850/F13K23_8 (Phosphoglycerate mutase family protein) cytosol [GO:0005829]; mitochondrion [GO:0005739]; phosphatase activity [GO:0016791]; RNA modification [GO:0009451],cytosol [GO:0005829]; phosphatase activity [GO:0016791] locus:2088429;,locus:2010396; AT3G26780,AT1G12850 Pfam:PGAM NA NA NA NA NA NA NA ENOG411DWM0 XYLA Q9FKK7,F4KC24 XYLA_ARATH,F4KC24_ARATH Xylose isomerase (EC 5.3.1.5) ARA:AT5G57655-MONOMER; 5.3.1.5 53720,32408 Xylose isomerase (EC 5.3.1.5) cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; metal ion binding [GO:0046872]; xylose isomerase activity [GO:0009045]; D-xylose metabolic process [GO:0042732]; pentose-phosphate shunt [GO:0006098],metal ion binding [GO:0046872]; xylose isomerase activity [GO:0009045]; D-xylose metabolic process [GO:0042732]; pentose-phosphate shunt [GO:0006098] locus:505006696; AT5G57655 xylose isomerase Xylose isomerase (EC 5.3.1.5),Xylose isomerase (EC 5.3.1.5) (Fragment) Q8H3Q7,A0A0P0XA52 Q8H3Q7_ORYSJ,A0A0P0XA52_ORYSJ P0625E02.119 Os07g0669100 OSNPB_070669100,Os07g0669100 OSNPB_070669100 ENOG411DWM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os05g0170950 protein (Fragment) A0A0P0WIK0 A0A0P0WIK0_ORYSJ Os05g0170950 OSNPB_050170950 ENOG411DWM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription regulatory region sequence-specific DNA binding Homeobox-leucine zipper protein HOX12 (HD-ZIP protein HOX12) (Homeodomain transcription factor HOX12) (OsHox12) Q10QF2 HOX12_ORYSJ HOX12 Os03g0198600 LOC_Os03g10210 OsJ_009423 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DWM3 HSFB2B Q9T0D3 HFB2B_ARATH Heat stress transcription factor B-2b (AtHsfB2b) (AtHsf-11) (Heat shock factor protein 7) (HSF 7) (Heat shock transcription factor 7) (HSTF 7) Resistant to disease-F. Schoffl-2009 FUNCTION: Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 39705 Heat stress transcription factor B-2b (AtHsfB2b) (AtHsf-11) (Heat shock factor protein 7) (HSF 7) (Heat shock transcription factor 7) (HSTF 7) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of transcription, DNA-templated [GO:0045892]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2139792; AT4G11660 heat stress transcription factor Heat stress transcription factor B-2b (Heat stress transcription factor 2) (rHsf2) (Heat stress transcription factor 21) (OsHsf-21),Heat stress transcription factor B-2c (Heat stress transcription factor 24) (OsHsf-24),Os11g0195000 protein,Os09g0526600 protein (Fragment) Q6Z9C8,Q652B0,A0A0P0Y090,A0A0P0XPJ6 HFB2B_ORYSJ,HFB2C_ORYSJ,A0A0P0Y090_ORYSJ,A0A0P0XPJ6_ORYSJ HSFB2B HSF2 HSF21 Os08g0546800 LOC_Os08g43334 OJ1323_A06.29 P0544G09.1,HSFB2C HSF24 Os09g0526600 LOC_Os09g35790 OJ1439_F07.16-1 OJ1439_F07.16-2,Os11g0195000 OSNPB_110195000,Os09g0526600 OSNPB_090526600 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DWM8 T1G12.1 Q6NLR2,Q9CA11,Q9C5R0,A8MR14 Q6NLR2_ARATH,Q9CA11_ARATH,Q9C5R0_ARATH,A8MR14_ARATH At1g64650 (Major facilitator superfamily protein),At3g49310 (Major facilitator superfamily protein) (Putative transporter; 8780-5873),AT4g27720/T29A15_210 (Major facilitator superfamily protein) (Putative transporter) (Uncharacterized protein T29A15.210),Major facilitator superfamily protein 50658,50880,50886,46212 At1g64650 (Major facilitator superfamily protein),At3g49310 (Major facilitator superfamily protein) (Putative transporter; 8780-5873),AT4g27720/T29A15_210 (Major facilitator superfamily protein) (Putative transporter) (Uncharacterized protein T29A15.210),Major facilitator superfamily protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; molybdate ion transmembrane transporter activity [GO:0015098],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; molybdate ion transmembrane transporter activity [GO:0015098],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; molybdate ion transmembrane transporter activity [GO:0015098],integral component of membrane [GO:0016021]; molybdate ion transmembrane transporter activity [GO:0015098] locus:2019429;,locus:2082971;,locus:2137707; AT1G64650,AT3G49310,AT4G27720 Major facilitator superfamily domain-containing protein DUF791 domain protein (Major Facilitator Superfamily protein, expressed) (Os10g0519600 protein) (Putative transporter) (cDNA clone:J033130M19, full insert sequence),DUF791 domain protein (Expressed protein) (Os03g0114800 protein) (Putative transporter) (cDNA clone:J013023A12, full insert sequence),Os03g0114800 protein (Fragment),Os10g0519600 protein (Fragment) Q9FWD6,Q8GZW6,A0A0N7KGG6,A0A0P0XWX2 Q9FWD6_ORYSJ,Q8GZW6_ORYSJ,A0A0N7KGG6_ORYSJ,A0A0P0XWX2_ORYSJ ABNORMAL SHOOT IN YOUTH LOC_Os10g37520 Os10g0519600 OsJ_32177 OSJNBb0018B10.4 OSNPB_100519600,OSJNBa0090O10.18 ABNORMAL SHOOT IN YOUTH LIKE LOC_Os03g02380 Os03g0114800 OsJ_09160 OSNPB_030114800,Os03g0114800 OSNPB_030114800,Os10g0519600 OSNPB_100519600 ENOG411DWM9 Q8L9L9,Q3E9D4 Q8L9L9_ARATH,Q3E9D4_ARATH At5g18940 (Mo25 family protein),Mo25 family protein R-ATH-6798695; 39841,39656 At5g18940 (Mo25 family protein),Mo25 family protein locus:2144990; AT5G18940 calcium-binding protein Os07g0647100 protein (cDNA clone:J013002K24, full insert sequence),HEAT repeat family protein, expressed (Os03g0359700 protein) (cDNA clone:001-033-C03, full insert sequence),Os03g0359700 protein Q7XIQ4,Q10L40,A0A0P0VXN6 Q7XIQ4_ORYSJ,Q10L40_ORYSJ,A0A0P0VXN6_ORYSJ OJ1316_A04.107 P0503D09.124 Os07g0647100 OsJ_25361 OSNPB_070647100,LOC_Os03g24520 Os03g0359700 OsJ_10918 OSNPB_030359700,Os03g0359700 OSNPB_030359700 ENOG411E5JN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os06g0199402 protein Q69K56 Q69K56_ORYSJ Os06g0199402 B1172G12.25 OJ1147_D11.3 OsJ_20465 OSNPB_060199402 ENOG411E5JB MSI17.3 Q1ECL9 Q1ECL9_ARATH At5g38300 (Homeobox Hox-B3-like protein) 29001 At5g38300 (Homeobox Hox-B3-like protein) DNA binding [GO:0003677] locus:2173303; AT5G38300 NA NA NA NA NA NA NA NA ENOG411E5JD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EHG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GABA-A receptor epsilon-like subunit (Os01g0283300 protein) (Putative GABA-A receptor epsilon-like subunit) (cDNA clone:001-040-C08, full insert sequence) (cDNA clone:001-208-C09, full insert sequence) (cDNA clone:006-302-D10, full insert sequence),Os07g0418600 protein (cDNA clone:001-205-D07, full insert sequence),Os07g0418700 protein (cDNA clone:001-205-C04, full insert sequence) Q9ARY7,Q8H5X2,Q8H5W8 Q9ARY7_ORYSJ,Q8H5X2_ORYSJ,Q8H5W8_ORYSJ OSJNBa0004B13.11 Os01g0283300 OsJ_01334 OSNPB_010283300 P0581F09.21,OJ1123_B01.104 P0025D09.120 Os07g0418600 OsJ_23979 OSNPB_070418600,OJ1123_B01.110 P0025D09.126 Os07g0418700 OsJ_23980 OSNPB_070418700 ENOG411EHG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase Os12g0534900 protein A0A0P0YB04 A0A0P0YB04_ORYSJ Os12g0534900 OSNPB_120534900 ENOG411EKS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os06g0132550 protein A0A0P0WSK2 A0A0P0WSK2_ORYSJ Os06g0132550 OSNPB_060132550 ENOG411EHG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DUHM CCB4 Q6NQK9,A0A1P8ASR1 CCB4_ARATH,A0A1P8ASR1_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic,Cofactor assembly of complex C DISRUPTION PHENOTYPE: Seedling lethal when grown on soil. On agar plates supplied with sucrose, seedlings grow very slowly with a chlorotic phenotype. Deficiency in the accumulation of the subunits of the cytochrome b6f complex and lack of covalent heme binding to cytochrome b6. {ECO:0000269|PubMed:18593701}. FUNCTION: Required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Controls the conversion of apocytochrome b6 to holocytochrome b6. Required for covalent binding of the c-type heme to cytochrome b6. {ECO:0000269|PubMed:18593701}. 32222,30671 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic,Cofactor assembly of complex C chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; cytochrome b6f complex assembly [GO:0010190] locus:2025896; AT1G59840 Protein of unknown function (DUF2930) OSJNBb0059K02.12 protein (Os04g0650500 protein) (cDNA clone:006-312-B03, full insert sequence) (cDNA clone:J013074C08, full insert sequence) Q7XMP9 Q7XMP9_ORYSJ Os04g0650500 OsJ_16429 OSJNBb0059K02.12 OSNPB_040650500 ENOG411DUHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0227200 protein B9F819 B9F819_ORYSJ Os04g0227200 OsJ_13475 OSNPB_040227200 ENOG411EJPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nucleoporin NA NA NA NA NA NA NA ENOG411EJPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein NA NA NA NA NA NA NA ENOG411EJPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HI0933-like protein NA NA NA NA NA NA NA ENOG411EJPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1162) Os02g0470400 protein (Fragment) A0A0P0VIW0 A0A0P0VIW0_ORYSJ Os02g0470400 OSNPB_020470400 ENOG411EJPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Protein of unknown function (DUF3730) NA NA NA NA NA NA NA ENOG411EJPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJPP Q9LN50,A0A1P8AWE9 PMTS_ARATH,A0A1P8AWE9_ARATH Probable methyltransferase PMT28 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2.1.1.- 82662,68865 Probable methyltransferase PMT28 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2016392; AT1G19430 Pfam:DUF248 Methyltransferase family protein, expressed (Os03g0775200 protein) Q8H8N4 Q8H8N4_ORYSJ Os03g0775200 LOC_Os03g56380 Os03g0775200 OsJ_12771 OSJNBa0070N04.3 OSNPB_030775200 ENOG411EJPS Q9FLJ6 PP439_ARATH Pentatricopeptide repeat-containing protein At5g61370, mitochondrial 55549 Pentatricopeptide repeat-containing protein At5g61370, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2163188; AT5G61370 pentatricopeptide repeat-containing protein At5g61370 NA NA NA NA NA NA NA ENOG411EJPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0705300 protein (Fragment) A0A0P0X0N3 A0A0P0X0N3_ORYSJ Os06g0705300 OSNPB_060705300 ENOG411EJPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411EJPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0193800 protein (Fragment),Os11g0662100 protein (Fragment),Os07g0640300 protein (Fragment),Os08g0522100 protein (Fragment) A0A0N7KKA3,A0A0P0Y524,A0A0P0X9M0,A0A0P0XIC6 A0A0N7KKA3_ORYSJ,A0A0P0Y524_ORYSJ,A0A0P0X9M0_ORYSJ,A0A0P0XIC6_ORYSJ Os05g0193800 OSNPB_050193800,Os11g0662100 OSNPB_110662100,Os07g0640300 OSNPB_070640300,Os08g0522100 OSNPB_080522100 ENOG411EJPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type II intron maturase NA NA NA NA NA NA NA ENOG411EJPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EJPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative peptidoglycan binding domain NA NA NA NA NA NA NA ENOG411EJPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Penicillin binding protein transpeptidase domain NA NA NA NA NA NA NA ENOG411EJP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EJP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJP0 A8MQW1 A8MQW1_ARATH ECA1 gametogenesis related family protein 38641 ECA1 gametogenesis related family protein locus:4010713521; AT1G44191 ECA1 gametogenesis related family protein NA NA NA NA NA NA NA ENOG411EJP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAAX Q9SFG4 Q9SFG4_ARATH F2O10.4 protein (RNI-like superfamily protein) 23566 F2O10.4 protein (RNI-like superfamily protein) locus:2083028; AT3G06000 Leucine-rich repeat family protein NA NA NA NA NA NA NA ENOG411DRK9 Q9SRU3,O64760,O49733 Q9SRU3_ARATH,O64760_ARATH,O49733_ARATH Putative translation initiation factor EIF-2B epsilon subunit (Trimeric LpxA-like enzyme),At2g34970 (Putative translation initiation factor eIF-2B epsilon subunit) (Trimeric LpxA-like enzyme),Initiation factor-2Bepsilon-like protein (Trimeric LpxA-like enzyme) R-ATH-72731; 76349,81864,79239 Putative translation initiation factor EIF-2B epsilon subunit (Trimeric LpxA-like enzyme),At2g34970 (Putative translation initiation factor eIF-2B epsilon subunit) (Trimeric LpxA-like enzyme),Initiation factor-2Bepsilon-like protein (Trimeric LpxA-like enzyme) nucleotidyltransferase activity [GO:0016779]; translation initiation factor activity [GO:0003743],cytosol [GO:0005829]; nucleotidyltransferase activity [GO:0016779]; translation initiation factor activity [GO:0003743] locus:2076477;,locus:2044712;,locus:2141921; AT3G02270,AT2G34970,AT4G18300 translation initiation factor eIF-2B subunit Os02g0812400 protein (Putative translation initiation factor eIF-2B epsilon subunit) (cDNA clone:J013049P14, full insert sequence) Q6K3F7 Q6K3F7_ORYSJ Os02g0812400 Os02g0812400 OSJNBa0053L11.10 OSNPB_020812400 P0016F11.32 ENOG411DRK8 PEX4 Q8LGF7 PEX4_ARATH Protein PEROXIN-4 (AtPEX4) (E2 ubiquitin-conjugating enzyme 21) (Probable ubiquitin-conjugating enzyme E2 21) (EC 2.3.2.23) (Ubiquitin carrier protein 21) FUNCTION: Required for peroxisome biogenesis. Necessary for the developmental elimination of obsolete peroxisome matrix proteins. May be involved in the ubiquitination of PEX5, targeting it for recycling. Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:19246395}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 17708 Protein PEROXIN-4 (AtPEX4) (E2 ubiquitin-conjugating enzyme 21) (Probable ubiquitin-conjugating enzyme E2 21) (EC 2.3.2.23) (Ubiquitin carrier protein 21) cytoplasm [GO:0005737]; peroxisomal membrane [GO:0005778]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; fatty acid beta-oxidation [GO:0006635]; peroxisome organization [GO:0007031]; protein import into peroxisome matrix [GO:0016558] locus:2145269; AT5G25760 Ubiquitin-conjugating enzyme Os02g0634800 protein (Putative ubiquitin-conjugating enzyme E2) (cDNA clone:001-032-B10, full insert sequence) Q6H7I5 Q6H7I5_ORYSJ Os02g0634800 Os02g0634800 OJ1626_B09.3 OJ1643_A10.34 OSNPB_020634800 ENOG411DRK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411DRK6 Q9FG23 CK5P3_ARATH CDK5RAP3-like protein FUNCTION: Potential regulator of CDK5 activity. {ECO:0000250}. 62129 CDK5RAP3-like protein endomembrane system [GO:0012505]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]; regulation of mitotic cell cycle [GO:0007346] locus:2170229; AT5G06830 CDK5RAP3-like CDK5 activator-binding protein-like (Os06g0320100 protein) (cDNA clone:J013095B21, full insert sequence) (cDNA clone:J033051I20, full insert sequence) Q5Z9Z1 Q5Z9Z1_ORYSJ Os06g0320100 Os06g0320100 OsJ_21153 OSNPB_060320100 P0592B08.34 ENOG411DRK5 Q9C977 PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial 67282 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2034215; AT1G80270 pentatricopeptide repeat-containing protein At1g80270 DNA-binding protein, putative, expressed (Os12g0170100 protein) (cDNA clone:J013026D13, full insert sequence),Os01g0280400 protein (Putative DNA-binding protein) Q2QX42,Q5NAB7 Q2QX42_ORYSJ,Q5NAB7_ORYSJ LOC_Os12g07260 Os12g0170100 OsJ_35368 OSNPB_120170100,Os01g0280400 B1085F09.11 OsJ_01319 OSNPB_010280400 P0003H10.22 ENOG411DRK4 Q8LPF5,Q949N8,F4HS17 Q8LPF5_ARATH,Q949N8_ARATH,F4HS17_ARATH Alpha/beta-Hydrolases superfamily protein (At1g18460/F15H18_15),Alpha/beta-Hydrolases superfamily protein (Putative lipase),Alpha/beta-Hydrolases superfamily protein ARA:AT1G18460-MONOMER; 79429,80039,72344 Alpha/beta-Hydrolases superfamily protein (At1g18460/F15H18_15),Alpha/beta-Hydrolases superfamily protein (Putative lipase),Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629],hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2014159;,locus:2031521; AT1G18460,AT1G73920 Lipase family Os01g0521400 protein (Fragment) A0A0P0V3G9 A0A0P0V3G9_ORYSJ Os01g0521400 OSNPB_010521400 ENOG411DRK3 T1B9.16 Q8W4D7,F4JDA5,F4JDA6 Q8W4D7_ARATH,F4JDA5_ARATH,F4JDA6_ARATH GPI transamidase component PIG-S-like protein (Uncharacterized protein At3g07180) (Uncharacterized protein At3g07180; T1B9.16),GPI transamidase component PIG-S-like protein 67129,66214,50819 GPI transamidase component PIG-S-like protein (Uncharacterized protein At3g07180) (Uncharacterized protein At3g07180; T1B9.16),GPI transamidase component PIG-S-like protein endoplasmic reticulum [GO:0005783]; GPI-anchor transamidase complex [GO:0042765]; vacuolar membrane [GO:0005774]; attachment of GPI anchor to protein [GO:0016255],GPI-anchor transamidase complex [GO:0042765]; attachment of GPI anchor to protein [GO:0016255] locus:2098535; AT3G07180 GPI transamidase component GPI transamidase component PIG-S-like (Os01g0907300 protein),Os01g0907300 protein (Putative phosphatidylinositol glycan class S) Q5N713,Q5N714 Q5N713_ORYSJ,Q5N714_ORYSJ B1417F08.19-2 Os01g0907300 OSNPB_010907300,B1417F08.19-1 Os01g0907300 OsJ_04471 OSNPB_010907300 ENOG411DRK2 LHCB1.1,LHCB1.2,LHCB2.1,LHCB2.4,LHCB1.3,LHCB2.2,Lhb1B1,Lhb1B2,LHCB2.3 P0CJ48,Q8VZ87,Q9SHR7,Q9XF87,P04778,Q9S7J7,Q39142,Q39141,A0A1P8AZ91,A0A1I9LMB4 CB1A_ARATH,CB1B_ARATH,CB21_ARATH,CB24_ARATH,CB1C_ARATH,CB22_ARATH,Q39142_ARATH,Q39141_ARATH,A0A1P8AZ91_ARATH,A0A1I9LMB4_ARATH Chlorophyll a-b binding protein 2, chloroplastic (Chlorophyll a-b protein 165) (CAB-165) (LHCII type I CAB-2),Chlorophyll a-b binding protein 3, chloroplastic (Chlorophyll a-b protein 180) (CAB-180) (LHCII type I CAB-3),Chlorophyll a-b binding protein 2.1, chloroplastic (Photosystem II light harvesting complex gene 2.1) (Protein LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2.1),Chlorophyll a-b binding protein 2.4, chloroplastic (Photosystem II light harvesting complex gene 2.4) (Protein LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2.4),Chlorophyll a-b binding protein 1, chloroplastic (Chlorophyll a-b protein 140) (CAB-140) (LHCII type I CAB-1),Chlorophyll a-b binding protein 2.2, chloroplastic (Photosystem II light harvesting complex gene 2.2) (Protein LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2.2),Chlorophyll a-b binding protein, chloroplastic DISRUPTION PHENOTYPE: In plants silenced with microRNAs, functional LHCII thylakoid protein complexes where LHCB2 is replaced by LHCB1. However these LHCII complexes are impaired in light state transitions, leading to stunted growth in high light. {ECO:0000269|PubMed:25194026}.,DISRUPTION PHENOTYPE: In plants silenced with microRNAs, functional LHCII thylakoid protein complexes where LHCB2 is replaced by LHCB1. However these LHCII complexes are impaired in light state transitions, leading to stunted growth in high light (PubMed:25194026). Reduced reactive oxygen species (ROS) production in leaves and impaired stomatal closure in response to abscisic acid (ABA). Increased water loss and reduced resistance to drought, probably due to open stomata. Altered expression of other LHCB members (PubMed:22143917). {ECO:0000269|PubMed:22143917, ECO:0000269|PubMed:25194026}. The mutant shows ABA insensitivity in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the mutant lose more water than those of the wild-type plants under dehydration condition; both young seedlings and mature plants of the mutant have lower capacity to conserve water during drought stress in comparison with wild-type plants. The ROS levels increase in the mutant in comparison with wild-type plants in both the whole leaves and in guard cells. Treatment with low concentrations of ABA reduces ROS levels in both whole leaves(1 to 10 uM ABA application) and in guard cells(5 uM ABA application) in the mutant plants.,lhcb1 lhcb6 double mutant show ABA insensitivity than wild-type in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the double mutant lose more water than those of wild-type plants under dehydration condition and that both young seedlings and mature plants of the double mutant have lower capacity to conserve their water during drought stress in comparison with wild-type plants. The ROS levels increase in the double mutants in comparison with wild-type plants in both the whole leaves and in guard cells. Low concentrations ABA treatments reduce ROS levels of double mutents in both whole leaves(1 to 10 ;M ABA application) and in guard cells(5 ;M ABA application). FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (By similarity). Mediates rapid phosphorylation and migration of LHCII-PSII to photosystem I (PSI) after transition to state 2 (red) light conditions, thus leading to the formation of PSI-PSII-LHCII and PSI-LHCII supercomplex to balance the relative excitation of PSI and PSII (PubMed:23995216, PubMed:23888908, PubMed:25194026, PubMed:26392145). Involved in the production of reactive oxygen species (ROS) and stomatal closure upon abscisic acid (ABA) treatment. Required to prevent water loss (By similarity). {ECO:0000250|UniProtKB:P27521, ECO:0000250|UniProtKB:Q9S7J7, ECO:0000269|PubMed:23888908, ECO:0000269|PubMed:23995216, ECO:0000269|PubMed:25194026, ECO:0000269|PubMed:26392145}.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (By similarity). Mediates rapid phosphorylation and migration of LHCII-PSII to photosystem I (PSI) after transition to state 2 (red) light conditions, thus leading to the formation of PSI-PSII-LHCII and PSI-LHCII supercomplex to balance the relative excitation of PSI and PSII (PubMed:23995216, PubMed:23888908, PubMed:25194026, PubMed:26392145). Involved in the production of reactive oxygen species (ROS) and stomatal closure upon abscisic acid (ABA) treatment. Required to prevent water loss (PubMed:22143917). {ECO:0000250|UniProtKB:P27521, ECO:0000269|PubMed:22143917, ECO:0000269|PubMed:23888908, ECO:0000269|PubMed:23995216, ECO:0000269|PubMed:25194026, ECO:0000269|PubMed:26392145}.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. 28227,28650,28803,28241,28621,28170,28054,35153,32588 Chlorophyll a-b binding protein 2, chloroplastic (Chlorophyll a-b protein 165) (CAB-165) (LHCII type I CAB-2),Chlorophyll a-b binding protein 3, chloroplastic (Chlorophyll a-b protein 180) (CAB-180) (LHCII type I CAB-3),Chlorophyll a-b binding protein 2.1, chloroplastic (Photosystem II light harvesting complex gene 2.1) (Protein LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2.1),Chlorophyll a-b binding protein 2.4, chloroplastic (Photosystem II light harvesting complex gene 2.4) (Protein LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2.4),Chlorophyll a-b binding protein 1, chloroplastic (Chlorophyll a-b protein 140) (CAB-140) (LHCII type I CAB-1),Chlorophyll a-b binding protein 2.2, chloroplastic (Photosystem II light harvesting complex gene 2.2) (Protein LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2.2),Chlorophyll a-b binding protein, chloroplastic apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to fructose [GO:0009750]; response to red light [GO:0010114],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to light stimulus [GO:0009416],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; PSII associated light-harvesting complex II [GO:0009517]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; cellular response to abscisic acid stimulus [GO:0071215]; photosynthesis, light harvesting in photosystem I [GO:0009768]; photosynthesis, light harvesting in photosystem II [GO:0009769]; positive regulation of reactive oxygen species biosynthetic process [GO:1903428]; protein-chromophore linkage [GO:0018298]; regulation of stomatal closure [GO:0090333]; response to blue light [GO:0009637]; response to cold [GO:0009409]; response to desiccation [GO:0009269]; response to far red light [GO:0010218]; response to high light intensity [GO:0009644]; response to light stimulus [GO:0009416]; response to low light intensity stimulus [GO:0009645]; response to red light [GO:0010114]; water homeostasis [GO:0030104],chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; PSII associated light-harvesting complex II [GO:0009517]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; cellular response to abscisic acid stimulus [GO:0071215]; photosynthesis, light harvesting in photosystem I [GO:0009768]; photosynthesis, light harvesting in photosystem II [GO:0009769]; positive regulation of reactive oxygen species biosynthetic process [GO:1903428]; protein-chromophore linkage [GO:0018298]; regulation of stomatal closure [GO:0090333]; response to blue light [GO:0009637]; response to cold [GO:0009409]; response to desiccation [GO:0009269]; response to far red light [GO:0010218]; response to high light intensity [GO:0009644]; response to light stimulus [GO:0009416]; response to low light intensity stimulus [GO:0009645]; response to red light [GO:0010114]; water homeostasis [GO:0030104],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to light stimulus [GO:0009416],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; PSII associated light-harvesting complex II [GO:0009517]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; cellular response to abscisic acid stimulus [GO:0071215]; photosynthesis, light harvesting in photosystem I [GO:0009768]; photosynthesis, light harvesting in photosystem II [GO:0009769]; positive regulation of reactive oxygen species biosynthetic process [GO:1903428]; protein-chromophore linkage [GO:0018298]; regulation of stomatal closure [GO:0090333]; response to cold [GO:0009409]; response to desiccation [GO:0009269]; response to far red light [GO:0010218]; response to high light intensity [GO:0009644]; response to light stimulus [GO:0009416]; response to low light intensity stimulus [GO:0009645]; response to red light [GO:0010114]; water homeostasis [GO:0030104],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to light stimulus [GO:0009416],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; chlorophyll binding [GO:0016168]; photosynthesis, light harvesting [GO:0009765]; protein-chromophore linkage [GO:0018298] locus:2019372;,locus:2019287;,locus:2042148;,locus:2089139;,locus:2019322;,locus:2044988;,locus:2040944;,locus:2040934; AT1G29920,AT1G29910,AT2G05100,AT3G27690,AT1G29930,AT2G05070,AT2G34430,AT2G34420 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic (LHCII type I CAB) (LHCP),Chlorophyll a-b binding protein, chloroplastic (Fragment) Q10HD0,A0A0P0W0H3 CB23_ORYSJ,A0A0P0W0H3_ORYSJ RCABP89 Os03g0592500 LOC_Os03g39610 OsJ_011145 OSJNBb0056O10.8,Os03g0592500 OSNPB_030592500 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DRK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA QLQ Growth-regulating factor 3 (OsGRF3) (Transcription activator GRF3),Growth-regulating factor 4 (OsGRF4) (Transcription activator GRF4),Os04g0600900 protein,Os04g0600900 protein (Fragment) Q6AWY6,Q6ZIK5,A0A0P0WEB0,A0A0P0WED1 GRF3_ORYSJ,GRF4_ORYSJ,A0A0P0WEB0_ORYSJ,A0A0P0WED1_ORYSJ GRF3 Os04g0600900 LOC_Os04g51190 OsJ_16036 OSJNBa0083N12.16,GRF4 Os02g0701300 LOC_Os02g47280 OJ1111_E07.19 OsJ_08054,Os04g0600900 OSNPB_040600900 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411DRK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XS domain NA NA NA NA NA NA NA ENOG411DRKN Q6NKY5,F4I3G8 Q6NKY5_ARATH,F4I3G8_ARATH At1g55880 (Pyridoxal-5'-phosphate-dependent enzyme family protein) (Uncharacterized protein At1g55880),Pyridoxal-5'-phosphate-dependent enzyme family protein ARA:AT1G55880-MONOMER; 45438,37664 At1g55880 (Pyridoxal-5'-phosphate-dependent enzyme family protein) (Uncharacterized protein At1g55880),Pyridoxal-5'-phosphate-dependent enzyme family protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; pyridoxal phosphate binding [GO:0030170]; cysteine biosynthetic process from serine [GO:0006535],integral component of membrane [GO:0016021]; cysteine biosynthetic process from serine [GO:0006535] locus:2012110; AT1G55880 cysteine synthase Os03g0215800 protein (Pyridoxal-phosphate dependent enzyme family protein, expressed) (cDNA clone:J023083K22, full insert sequence) Q10PZ5 Q10PZ5_ORYSJ Os03g0215800 LOC_Os03g11660 Os03g0215800 OSNPB_030215800 ENOG411DRKM MAPKKK3,MAP3KA F4HRJ4,A0A1P8ASW4,A0A1P8AT18 M3K3A_ARATH,A0A1P8ASW4_ARATH,A0A1P8AT18_ARATH Mitogen-activated protein kinase kinase kinase 3 (EC 2.7.11.25) (MAP3K alpha protein kinase) (AtMAP3Kalpha),Mitogen-activated protein kinase kinase kinase 3 2.7.11.25 66447,57259,57131 Mitogen-activated protein kinase kinase kinase 3 (EC 2.7.11.25) (MAP3K alpha protein kinase) (AtMAP3Kalpha),Mitogen-activated protein kinase kinase kinase 3 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in flower buds, roots, leaves, seedlings, stems and immature siliques. Absent of mature pollen. {ECO:0000269|PubMed:10095117}. locus:2024832; AT1G53570 - STE kinases include homologs to sterile 7 sterile 11 and sterile 20 from yeast expressed Os04g0437600 protein (cDNA clone:J013158E14, full insert sequence),Os11g0207200 protein (Fragment) Q0JD14,Q0ITY8 Q0JD14_ORYSJ,Q0ITY8_ORYSJ Os04g0437600 Os04g0437600 OSNPB_040437600,Os11g0207200 OSNPB_110207200 ENOG411DRKK TPS20,TPS06 Q9FI27,Q84UU9 TPS20_ARATH,TPS06_ARATH Terpenoid synthase 20 (AtTPS20) (EC 4.2.3.-),Terpenoid synthase 6 (AtTPS06) (EC 4.2.3.-) FUNCTION: Does not possess diterpene synthase activity. {ECO:0000269|PubMed:27933080}.,FUNCTION: Involved in terpene biosynthesis in roots. Possesses sesquiterpene (C15) synthase activity and diterpene (C20) synthase activity in vitro. Possesses dolabella-3,7-dien-18-ol synthase activity in vitro. Catalyzes the formation of dolabella-3,7-dien-18-ol from geranylgeranyl diphosphate. {ECO:0000269|PubMed:27933080}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT5G48110-MONOMER;,ARA:AT1G70080-MONOMER; 4.2.3.- 68834,71112 Terpenoid synthase 20 (AtTPS20) (EC 4.2.3.-),Terpenoid synthase 6 (AtTPS06) (EC 4.2.3.-) cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpenoid biosynthetic process [GO:0016114] TISSUE SPECIFICITY: Predominantly expressed in roots but also in leaves and stems. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Predominantly expressed in flowers but also in stems, siliques, roots and leaves. {ECO:0000269|PubMed:12566586}. locus:2020658; AT5G48110,AT1G70080 terpene synthase activity Os03g0362500 protein,Os03g0361600 protein (Fragment),Os03g0361100 protein (Fragment),Os03g0361700 protein (Fragment) A0A0P0VYI4,A0A0P0VXR2,A0A0P0VXM7,A0A0N7KHA7 A0A0P0VYI4_ORYSJ,A0A0P0VXR2_ORYSJ,A0A0P0VXM7_ORYSJ,A0A0N7KHA7_ORYSJ Os03g0362500 OSNPB_030362500,Os03g0361600 OSNPB_030361600,Os03g0361100 OSNPB_030361100,Os03g0361700 OSNPB_030361700 ENOG411DRKJ PSA3 Q9M3C6 PSA3C_ARATH Photosystem I assembly factor PSA3, chloroplastic (Protein PHOTOSYSTEM I ASSEMBLY 3) (Protein PIGMENT DEFECTIVE 329) DISRUPTION PHENOTYPE: Seedling lethality when homozygous. Pale green and slow growing phenotype when grown on MS medium supplemented with 2% sucrose. {ECO:0000269|PubMed:28522455}. Pigment defective embryo-D. Meinke-2011 FUNCTION: Nuclear genome-encoded factor required for the accumulation of photosystem I (PSI). Functions as PSI biogenesis factor. Cooperates with PYG7 to promote the stable assembly of PSI in the thylakoid membrane. May target primarly the PsaC subunit. Does not seem to be required for the expression of chloroplast genes encoding PSI subunits. {ECO:0000269|PubMed:28522455}. 31245 Photosystem I assembly factor PSA3, chloroplastic (Protein PHOTOSYSTEM I ASSEMBLY 3) (Protein PIGMENT DEFECTIVE 329) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; stromal side of plastid thylakoid membrane [GO:0098572]; photosystem I assembly [GO:0048564] locus:2100691; AT3G55250 calcium homeostasis regulator CHoR1 Os05g0526200 protein (cDNA clone:J023107E19, full insert sequence) Q65X91 Q65X91_ORYSJ Os05g0526200 Os05g0526200 OJ1593_C11.11 OSNPB_050526200 ENOG411DRKI BDG4,BDG5 Q700D5,Q9FN79 BDG4_ARATH,BDG5_ARATH Probable lysophospholipase BODYGUARD 4 (AtBDG4) (EC 3.1.1.-),Probable lysophospholipase BODYGUARD 5 (AtBDG5) (EC 3.1.1.-) FUNCTION: Involved in cuticle development and morphogenesis. {ECO:0000250|UniProtKB:Q8LFX7}. 3.1.1.- 47456,50180 Probable lysophospholipase BODYGUARD 4 (AtBDG4) (EC 3.1.1.-),Probable lysophospholipase BODYGUARD 5 (AtBDG5) (EC 3.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555]; response to UV-B [GO:0010224],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed in epidermal cells. {ECO:0000269|PubMed:16299169}. locus:2175911;,locus:2175936; AT5G17780,AT5G17720 hydrolase alpha beta fold family protein Os07g0685500 protein (cDNA clone:J023063M21, full insert sequence),Os10g0422700 protein (Fragment) Q8LIH8,A0A0P0XV04 Q8LIH8_ORYSJ,A0A0P0XV04_ORYSJ OJ1200_C08.102 Os07g0685500 OsJ_25627 OSJNBa0060O17.38 OSNPB_070685500,Os10g0422700 OSNPB_100422700 ENOG411DRKH Q9S9M7 Q9S9M7_ARATH Nuclear protein (T24D18.18 protein) (Uncharacterized protein At1g16080) 34130 Nuclear protein (T24D18.18 protein) (Uncharacterized protein At1g16080) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; oxidoreductase activity [GO:0016491] locus:2200517; AT1G16080 NA Os08g0266300 protein A0A0P0XEB3 A0A0P0XEB3_ORYSJ Os08g0266300 OSNPB_080266300 ENOG411DRKG PCMP-E8 Q9FLS9 PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800 56049 Pentatricopeptide repeat-containing protein At5g61800 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2159238; AT5G61800 Pentatricopeptide repeat-containing protein OSJNBb0012E08.2 protein (Os04g0401200 protein) Q7XV94 Q7XV94_ORYSJ OSJNBb0012E08.2 Os04g0401200 OSNPB_040401200 ENOG411DRKF PAC Q39089 PAC_ARATH Protein PALE CRESS, chloroplastic DISRUPTION PHENOTYPE: Impaired chloroplast development from proplastids or etioplasts leading to reduced chlorophylls and carotenoids accumulation. Reduced accumulation and maturation of some chloroplast-encoded transcripts. Leaves are pale with enlarged intercellular spaces, and loss of differentiation between palisade and mesophyll layers. Partially restored by cytokinin treatment. {ECO:0000269|PubMed:7919990, ECO:0000269|PubMed:8709959, ECO:0000269|PubMed:9648738}. Seedling lethal (inferred from pigment defect)-P. Scolnik-1994 FUNCTION: Required for the differentiation of chloroplast from proplastids or etioplasts, probably by modulating some chloroplast-encoded genes expression and mRNA maturation. Involved in leaf-cells differentiation. {ECO:0000269|PubMed:7919990, ECO:0000269|PubMed:8709959, ECO:0000269|PubMed:9648738}. 36612 Protein PALE CRESS, chloroplastic amyloplast [GO:0009501]; chloroplast [GO:0009507]; chromoplast [GO:0009509]; etioplast [GO:0009513]; proplastid [GO:0009537]; cellular response to light stimulus [GO:0071482]; chloroplast mRNA processing [GO:0010239]; chloroplast organization [GO:0009658]; leaf morphogenesis [GO:0009965]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in green tissues, including leaves. Accumulates in chloroplasts of mature stomatal guard cells. {ECO:0000269|PubMed:10350211, ECO:0000269|PubMed:8709959}. locus:2039361; AT2G48120 NA Os05g0393400 protein (Putative pale cress protein) (cDNA clone:001-030-D08, full insert sequence) (cDNA clone:J013111H01, full insert sequence) (cDNA clone:J013151D13, full insert sequence) Q60ER3 Q60ER3_ORYSJ Os05g0393400 OJ1764_D01.19 OsJ_18439 OSNPB_050393400 ENOG411DRKE PPC4 Q8GVE8 CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 (AtPPC4) (PEPC 4) (PEPCase 4) (EC 4.1.1.31) FUNCTION: Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. ARA:AT1G68750-MONOMER; 4.1.1.31; 4.1.1.31 116586 Phosphoenolpyruvate carboxylase 4 (AtPPC4) (PEPC 4) (PEPCase 4) (EC 4.1.1.31) cytosol [GO:0005829]; phosphoenolpyruvate carboxylase activity [GO:0008964]; carbon fixation [GO:0015977]; photosynthesis [GO:0015979]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Expressed at low levels in flowers and siliques, and detectable in roots. {ECO:0000269|PubMed:12805623}. locus:2012448; AT1G68750 phosphoenolpyruvate carboxylase Os01g0110700 protein (Putative phosphoenolpyruvate carboxylase),Os01g0110700 protein (Fragment),Os01g0746000 protein (Fragment) Q657S3,A0A0P0UX68,A0A0P0V835 Q657S3_ORYSJ,A0A0P0UX68_ORYSJ,A0A0P0V835_ORYSJ Os01g0110700 Os01g0110700 OSNPB_010110700 P0439B06.13,Os01g0110700 OSNPB_010110700,Os01g0746000 OSNPB_010746000 ENOG411DRKD SERK2,SERK1 Q9XIC7,Q94AG2 SERK2_ARATH,SERK1_ARATH Somatic embryogenesis receptor kinase 2 (AtSERK2) (EC 2.7.11.1) (Somatic embryogenesis receptor-like kinase 2),Somatic embryogenesis receptor kinase 1 (AtSERK1) (EC 2.7.10.1) (EC 2.7.11.1) (Somatic embryogenesis receptor-like kinase 1) DISRUPTION PHENOTYPE: No visible phenotype. Serk1 and serk2 double mutants are completely male sterile due to a failure in tapetum specification. {ECO:0000269|PubMed:16284305, ECO:0000269|PubMed:16284306}. double mutants were not able to produce seeds because of a lack of pollen development in mutant anthers. In young buds double mutant anthers developed normally but serk1 serk2 microsporangia produced more sporogenous cells that were unable to develop beyond meiosis. Furthermore serk1 serk2 double mutants developed only three cell layers surrounding the sporogenous cell mass whereas wild-type anthers developed four cell layers. Further confocal microscopic and molecular analyses showed that serk1 serk2 double mutant anthers lack development of the tapetal cell layer which accounts for the microspore abortion and male sterility.,Exacerbation of phenotypes observed for single mutant bri1-6: petiole length inward curling inlforescence length and rosette size. FUNCTION: Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production. {ECO:0000269|PubMed:18667726}.,FUNCTION: Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway. {ECO:0000269|PubMed:11509554, ECO:0000269|PubMed:17693538}. MISCELLANEOUS: Seems to be related with early development of tissues in general rather than with embryogenesis. 2.7.11.1,2.7.10.1; 2.7.11.1 69403,69022 Somatic embryogenesis receptor kinase 2 (AtSERK2) (EC 2.7.11.1) (Somatic embryogenesis receptor-like kinase 2),Somatic embryogenesis receptor kinase 1 (AtSERK1) (EC 2.7.10.1) (EC 2.7.11.1) (Somatic embryogenesis receptor-like kinase 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; lipid binding [GO:0008289]; receptor serine/threonine kinase binding [GO:0033612]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; microsporogenesis [GO:0009556]; pollen maturation [GO:0010152]; protein phosphorylation [GO:0006468],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; receptor serine/threonine kinase binding [GO:0033612]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; brassinosteroid mediated signaling pathway [GO:0009742]; embryo development ending in seed dormancy [GO:0009793]; floral organ abscission [GO:0010227]; Golgi organization [GO:0007030]; microsporogenesis [GO:0009556]; pollen maturation [GO:0010152]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468] DEVELOPMENTAL STAGE: Expressed during pollen development and megasporogenesis in the nucellus of developing ovules, in all cells of the embryo sac up to fertilization and in all cells of the developing embryo until the heart-shaped stage. Found in epidermal and vascular cells of the late torpedo and cotyledon stages embryos. {ECO:0000269|PubMed:11706164, ECO:0000269|PubMed:16231101, ECO:0000269|PubMed:18515128}. TISSUE SPECIFICITY: Expressed in flowers, tapetum, developing microspores, all cells of the embryo sac, provascular strands and developing vascular bundles. Low expression in adult vascular tissue. {ECO:0000269|PubMed:16284305}.,TISSUE SPECIFICITY: Expressed in flowers, tapetum, developing microspores, all cells of the embryo sac, provascular strands and developing vascular bundles. Low expression in adult vascular tissue. Detected in root meristem. {ECO:0000269|PubMed:11706164, ECO:0000269|PubMed:16231101, ECO:0000269|PubMed:16284305, ECO:0000269|PubMed:18515128}. locus:2026097;,locus:2013021; AT1G34210,AT1G71830 Somatic embryogenesis receptor kinase LRR receptor kinase BAK1 (EC 2.7.11.1) (BRI1-associated receptor kinase 1 homolog) (OsBAK1) (Benzothiadiazole-induced SERK1) (BTH-induced SERK1) (OsBISERK1) (Somatic embryogenesis receptor kinase 1) (OsSERK1),LRR receptor kinase SERK2 (EC 2.7.11.1) (BRI1-associated receptor kinase 1 homolog 2) (OsBAK1-2) (Somatic embryogenesis receptor kinase 2) (OsSERK2),LRR receptor kinase SERK2 (EC 2.7.11.1) (BRI1-associated receptor kinase 1 homolog 3) (OsBAK1-3) (Somatic embryogenesis receptor kinase 3) (OsSERK3),Os04g0457800 protein (Fragment),Os08g0176200 protein (Fragment) Q6Z4U4,Q7XV05,Q67X31,A0A0P0WBA5,A0A0N7KPC9 BAK1_ORYSJ,SERK2_ORYSJ,SERK3_ORYSJ,A0A0P0WBA5_ORYSJ,A0A0N7KPC9_ORYSJ BAK1 BISERK1 Os08g0174700 LOC_Os08g07760 OsJ_26221 OSJNBa0054L03.30,SERK2 SERK1 Os04g0457800 LOC_Os04g38480 OsJ_15037 OSJNBa0036B21.13,SERK3 Os06g0225300 LOC_Os06g12120 OsJ_20659 OSNPB_060225300 P0690H04.4,Os04g0457800 OSNPB_040457800,Os08g0176200 OSNPB_080176200 FUNCTION: LRR receptor kinase involved in defense response (PubMed:22058019). Does not seem to be required specifically for XA21-mediated immunity or basal resistance to Xanthomonas oryzae pv. oryzae (Xoo), or immunity to Magnaporthe oryzae (PubMed:25266270). Involved in brassinosteroid (BR) signaling pathway. Acts as coreceptor of BRI1. Forms at the plasma membrane a receptor complex with BRI1 which is activated in response to brassinolide. Phosphorylates BRI1 (PubMed:27424498). Required for normal plant growth and leaf development (PubMed:22058019, PubMed:25266270). Possesses kinase activity in vitro (PubMed:25266270). {ECO:0000269|PubMed:19754838, ECO:0000269|PubMed:22058019, ECO:0000269|PubMed:25266270, ECO:0000269|PubMed:27424498}.,FUNCTION: LRR receptor kinase involved in positive regulation of somatic embryogenesis and defense response against the rice blast fungus pathogen Magnaporthe oryzae (PubMed:15968510). Involved in the positive regulation of receptor kinase-mediated immunity. Required for immunity mediated by the LRR receptor kinases XA21 and XA26/XA3 which recognize effectors from the bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo). Required for the immune response mediated by the LRR receptor kinase FLS2 which recognizes specifically the bacterial flagellin (flg22) effector. Kinase activity and direct interaction with the immune receptors is critical for their function (PubMed:24482436). Involved in the regulation of plant growth through the brassinosteroid (BR) signaling pathway (PubMed:19754838, PubMed:24482436). {ECO:0000269|PubMed:15968510, ECO:0000269|PubMed:19754838, ECO:0000269|PubMed:24482436}.,FUNCTION: May be involved in regulation of plant growth through the brassinosteroid (BR) signaling pathway. {ECO:0000269|PubMed:19754838}. MISCELLANEOUS: Plants over-expressing BAK1 have brassinosteroid gain-of-function phenotypes, including enlarged lamina joint angle, stunted stature and hypersensitivity to 24-epibrassinolide (BL) (PubMed:19754838). Plants silencing BAK1 show decreased sensitivity to BL, are semi-dwarf, have abnormal growth patterns in leaf development, increased expression level of pathogenesis-related genes and enhanced susceptibility to the rice blast fungal pathogen Magnaporthe oryzae (PubMed:22058019). {ECO:0000269|PubMed:19754838, ECO:0000269|PubMed:22058019}.,MISCELLANEOUS: Plants silencing SERK2 exhibit strong reduction of percentage of shoot regeneration from callus. Plants over-expressing SERK2 show enhanced resistance to the rice blast fungus Magnaporthe oryzae (PubMed:15968510). Plants silencing SERK2 have compromised XA21- and XA3/XA26-mediated immunity to the bacterial leaf blight pathogen Xanthomonas oryzae pv. oryzae (Xoo). Plants silencing SERK2 display altered morphology and reduced sensitivity to the hormone brassinolide (PubMed:24482436). {ECO:0000269|PubMed:15968510, ECO:0000269|PubMed:24482436}. ENOG411DRKC PLL4,PLL1,PLL5,POL Q9ZV25,O82302,Q9LQN6,Q8RWN7 P2C23_ARATH,P2C29_ARATH,P2C04_ARATH,P2C32_ARATH Probable protein phosphatase 2C 23 (AtPP2C23) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 4) (Protein phosphatase 2C PLL4) (PP2C PLL4),Protein phosphatase 2C 29 (AtPP2C29) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 1) (Protein phosphatase 2C PLL1) (PP2C PLL1),Probable protein phosphatase 2C 4 (AtPP2C04) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 5) (Protein phosphatase 2C PLL5) (PP2C PLL5),Protein phosphatase 2C 32 (AtPP2C32) (EC 3.1.3.16) (Protein POLTERGEIST) (Protein phosphatase 2C POL) (PP2C POL) DISRUPTION PHENOTYPE: Plants show abnormal leaves altered in shape and curling. {ECO:0000269|PubMed:16112663}.,DISRUPTION PHENOTYPE: Loss-of-function mutant pll1-1 (T-DNA insertion) shows suppression of clavata mutant phenotypes. Redundant with POL. Pol and pll1 double mutant inis seedling lethal. {ECO:0000269|PubMed:17079273}.,DISRUPTION PHENOTYPE: Loss-of-function mutant pol-6 (T-DNA insertion) shows suppression of clavata mutant phenotypes. The catalytic activity of POL may be functionally replaced by the activity of PLL1. Pol and pll1 double mutant is seedling lethal. {ECO:0000269|PubMed:16112663}. Abnormal leaf shape and size.,Decreased pedicel length.,Embryo lethal due to major defects in embryo patterning.,Abnormal leaf shape- semidominant. Abnormal leaf morphology-S. Clark-2005,Short pedicel-S. Clark-2005,Slow flower development; Slightly smaller meristems-S. Clark-2000 FUNCTION: Involved in leaf development regulation. {ECO:0000269|PubMed:16112663}.,FUNCTION: Involved in the regulation of pedicel length and of CLAVATA pathways controlling stem cell identity at shoot and flower meristems. {ECO:0000269|PubMed:16112663, ECO:0000269|PubMed:17079273}.,FUNCTION: Involved in the regulation of pedicel length and of CLAVATA pathways controlling stem cell identity at shoot and flower meristems. {ECO:0000269|PubMed:10725242, ECO:0000269|PubMed:12573213, ECO:0000269|PubMed:16112663, ECO:0000269|PubMed:17079273}. 3.1.3.16 72482,86523,74274,95571 Probable protein phosphatase 2C 23 (AtPP2C23) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 4) (Protein phosphatase 2C PLL4) (PP2C PLL4),Protein phosphatase 2C 29 (AtPP2C29) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 1) (Protein phosphatase 2C PLL1) (PP2C PLL1),Probable protein phosphatase 2C 4 (AtPP2C04) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 5) (Protein phosphatase 2C PLL5) (PP2C PLL5),Protein phosphatase 2C 32 (AtPP2C32) (EC 3.1.3.16) (Protein POLTERGEIST) (Protein phosphatase 2C POL) (PP2C POL) nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; leaf development [GO:0048366],nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; protein serine/threonine phosphatase activity [GO:0004722]; maintenance of meristem identity [GO:0010074]; meristem structural organization [GO:0009933]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; unidimensional cell growth [GO:0009826],nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; protein serine/threonine phosphatase activity [GO:0004722]; maintenance of meristem identity [GO:0010074]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed throughout development of the floral meristem, in all four floral whorls and as floral organs matured, limited to the ovule. {ECO:0000269|PubMed:12573213}. TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, young inflorescences, flowers and siliques. {ECO:0000269|PubMed:16112663}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, inflorescences, flowers and developing vascular tissue. {ECO:0000269|PubMed:16112663}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, inflorescences, flowers and throughout the shoot meristem. {ECO:0000269|PubMed:12573213, ECO:0000269|PubMed:16112663}. locus:2053265;,locus:2062481;,locus:2026605;,locus:2041444; AT2G28890,AT2G35350,AT1G07630,AT2G46920 phosphatase 2C Protein phosphatase 2C 35 (OsPP2C35) (EC 3.1.3.16) (XA21-binding protein 15),Probable protein phosphatase 2C 26 (OsPP2C26) (EC 3.1.3.16),Os03g0372500 protein (Protein phosphatase 2C containing protein, expressed) (cDNA clone:J033116E19, full insert sequence) (cDNA clone:J033149E04, full insert sequence),Os03g0821300 protein (Fragment) Q84T94,Q6ZGY0,Q84TS1,A0A0P0W5B5 P2C35_ORYSJ,P2C26_ORYSJ,Q84TS1_ORYSJ,A0A0P0W5B5_ORYSJ XB15 Os03g0821300 LOC_Os03g60650 OJ1754_E06.28 OsJ_012575,Os02g0690500 LOC_Os02g46490 OJ1743_B12.38 OsJ_007725,OSJNBb0097F01.10 LOC_Os03g25600 Os03g0372500 OSNPB_030372500,Os03g0821300 OSNPB_030821300 DISRUPTION PHENOTYPE: Enhanced resistance to Xantomonas oryzae pv. oryzae (Xoo), expression of defense-related genes and cell death (necrotic lesions). {ECO:0000269|PubMed:18817453}. FUNCTION: Protein phosphatase that acts on XA21 pathogen recognition receptor. Negatively regulates cell death and XA21-mediated innate immunity. {ECO:0000269|PubMed:18817453}. ENOG411DRKB PSI2 A0A1P8AN59,Q8L5Y3,A0A1P8AN72 A0A1P8AN59_ARATH,Q8L5Y3_ARATH,A0A1P8AN72_ARATH Elongation factor G, putative (DUF668),Elongation factor G, putative (DUF668) (Uncharacterized protein At1g30750) 49663,69395,51347 Elongation factor G, putative (DUF668),Elongation factor G, putative (DUF668) (Uncharacterized protein At1g30750) translation elongation factor activity [GO:0003746] locus:505006158; AT1G30755 Domain of unknown function (DUF3475) Os06g0716000 protein (Receptor-like protein kinase-like),Os06g0716000 protein (Fragment) Q5Z9P3,A0A0P0X0W5 Q5Z9P3_ORYSJ,A0A0P0X0W5_ORYSJ Os06g0716000 OSNPB_060716000 P0481E08.20,Os06g0716000 OSNPB_060716000 ENOG411DRKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1624) NA NA NA NA NA NA NA ENOG411DRKY HTH Q9S746,F4IF15 HTH_ARATH,F4IF15_ARATH Protein HOTHEAD (Protein ADHESION OF CALYX EDGES),Glucose-methanol-choline (GMC) oxidoreductase family protein Pollen development defective. Abnormal sepal development; Fused floral organs; Reduced fertility; Low penetrance of abnormal ovules-R. Pruitt-2003 FUNCTION: Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development. {ECO:0000269|PubMed:12904212, ECO:0000269|PubMed:15785770}. MISCELLANEOUS: Mutations in the gene for this protein reveals an unusual pattern of genetic transmission in which progeny plants inherit, at relatively high frequency, DNA sequences different from those carried by their parents. The instability observed is not random but seems to be confined to the restoration of sequence information in progeny plants that, although absent from the parent genome, was present in the genome of an earlier ancestor. ARA:AT1G72970-MONOMER;MetaCyc:AT1G72970-MONOMER; R-ATH-6798163; 65344,62209 Protein HOTHEAD (Protein ADHESION OF CALYX EDGES),Glucose-methanol-choline (GMC) oxidoreductase family protein extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; mandelonitrile lyase activity [GO:0046593]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cell-cell signaling [GO:0007267]; embryo sac development [GO:0009553]; fatty acid omega-oxidation [GO:0010430],flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, inflorescences and siliques. Found not only in epidermis but also in all sub-epidermal cell layers. {ECO:0000269|PubMed:12904212}. locus:2032627; AT1G72970 GMC oxidoreductase Os09g0363900 protein (Putative adhesion of calyx edges protein ACE) (cDNA clone:J023148B06, full insert sequence),Os08g0401500 protein (Putative mandelonitrile lyase) Q6K4D7,Q6Z290 Q6K4D7_ORYSJ,Q6Z290_ORYSJ Os09g0363900 OJ1001_G09.12 OJ1506_A04.26 OsJ_29078 OSNPB_090363900,Os08g0401500 Os08g0401500 OsJ_27223 OSJNBa0086F04.20 OSNPB_080401500 ENOG411DRKX NADK1 Q56YN3,A0A1I9LRY0,A0A1I9LRY1,F4IWD3 NADK1_ARATH,A0A1I9LRY0_ARATH,A0A1I9LRY1_ARATH,F4IWD3_ARATH NAD(H) kinase 1 (AtNADK-1) (EC 2.7.1.23) (EC 2.7.1.86),NAD kinase 1 Upon treatment with paraquat (an inducer of reactive oxygen species) the leaves of the mutant develop a purple colour (flavonoid anthocyanin) on their abaxial surfaces.,When grown on soil the aerial parts of the mutant show reduced growth relative to wildtype with no apparent change in plant morphology. This difference was not observed when the mutant was grown on MS medium. Dwarf; Sensitive to radiation and oxidative stress-M. Kazmaier-2005 FUNCTION: Phosphorylates both NAD(+) and NADH, with a twofold preference for NADH. Source of the cellular reductant NADPH which is an important antioxidant factor. {ECO:0000269|PubMed:15711971}. 2.7.1.23;2.7.1.86; 2.7.1.23; 2.7.1.86 58245,46475,67730,53382 NAD(H) kinase 1 (AtNADK-1) (EC 2.7.1.23) (EC 2.7.1.86),NAD kinase 1 ATP binding [GO:0005524]; NAD+ kinase activity [GO:0003951]; NADH kinase activity [GO:0042736]; NAD metabolic process [GO:0019674]; NADP biosynthetic process [GO:0006741],integral component of membrane [GO:0016021]; NAD+ kinase activity [GO:0003951]; NADP biosynthetic process [GO:0006741],integral component of membrane [GO:0016021]; NAD+ kinase activity [GO:0003951]; NAD metabolic process [GO:0019674]; NADP biosynthetic process [GO:0006741],NAD+ kinase activity [GO:0003951]; NADH kinase activity [GO:0042736]; NAD metabolic process [GO:0019674]; NADP biosynthetic process [GO:0006741] DEVELOPMENTAL STAGE: Expressed during development from young seedlings to flowering plants. {ECO:0000269|PubMed:15247403}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15247403, ECO:0000269|PubMed:15711971}. locus:2092935; AT3G21070 nad kinase NA NA NA NA NA NA NA ENOG411DRKW SETH5 A0A1P8B773,F4JHM9 A0A1P8B773_ARATH,F4JHM9_ARATH Transducin family protein / WD-40 repeat family protein Male gametophyte defective; Female gametophyte defective; Rare embryo defective (inferred)-D. Twell-2004 175410,211987 Transducin family protein / WD-40 repeat family protein intracellular [GO:0005622]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2134593; AT4G00800 vacuolar protein sorting-associated protein 8 homolog Os10g0182300 protein (Fragment),Os02g0124700 protein (Fragment) A0A0P0XTA9,A0A0P0VEA2 A0A0P0XTA9_ORYSJ,A0A0P0VEA2_ORYSJ Os10g0182300 OSNPB_100182300,Os02g0124700 OSNPB_020124700 ENOG411DRKV O80543 Y1280_ARATH Putative methyltransferase At1g22800, mitochondrial (EC 2.1.1.-) 2.1.1.- 39366 Putative methyltransferase At1g22800, mitochondrial (EC 2.1.1.-) mitochondrion [GO:0005739]; methyltransferase activity [GO:0008168] locus:2199650; AT1G22800 Methyltransferase domain Os12g0203100 protein A0A0P0Y7X5 A0A0P0Y7X5_ORYSJ Os12g0203100 OSNPB_120203100 ENOG411DRKU VICTR,PMI2,MPL12.5,MPL12.4,VICTL,MUD12.40,MDJ22.11 F4KHI3,Q9C9N6,Q9FHG0,Q9SW60,Q9FHF6,Q8LPH7,F4KG41,Q9FL35,Q9FHF4,Q93ZC0,A0A1P8BA95,A0A1P8BA80,A0A1P8B9W4,A0A1P8BG45,A0A1P8B9V7,A0A1P8BA65,A0A1P8BC84,A0A1P8BE50,A0A1P8BDP8,A0A1P8BDK0,A0A1P8BA82,A0A1P8BDG8,A0A1P8BA91,A0A1P8B9T9,A0A1P8B713,F4I9F1,A0A1P8BGA7,F4KFY1 VICTR_ARATH,PMI2_ARATH,Q9FHG0_ARATH,Q9SW60_ARATH,Q9FHF6_ARATH,Q8LPH7_ARATH,F4KG41_ARATH,Q9FL35_ARATH,Q9FHF4_ARATH,Q93ZC0_ARATH,A0A1P8BA95_ARATH,A0A1P8BA80_ARATH,A0A1P8B9W4_ARATH,A0A1P8BG45_ARATH,A0A1P8B9V7_ARATH,A0A1P8BA65_ARATH,A0A1P8BC84_ARATH,A0A1P8BE50_ARATH,A0A1P8BDP8_ARATH,A0A1P8BDK0_ARATH,A0A1P8BA82_ARATH,A0A1P8BDG8_ARATH,A0A1P8BA91_ARATH,A0A1P8B9T9_ARATH,A0A1P8B713_ARATH,F4I9F1_ARATH,A0A1P8BGA7_ARATH,F4KFY1_ARATH Protein VARIATION IN COMPOUND TRIGGERED ROOT growth response,Protein PLASTID MOVEMENT IMPAIRED 2 (Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2) (Protein WEB2),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein AT4g08450) (Uncharacterized protein C18G5.30),At1g31540 (Disease resistance) (Disease resistance protein (TIR-NBS-LRR class) family),Disease resistance protein (TIR-NBS-LRR class) family,At5g46490/K11I1_8 (Disease resistance protein (TIR-NBS-LRR class) family),Disease resistance protein (NBS-LRR class) family DISRUPTION PHENOTYPE: Loss of [5-(3,4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione- (DFPM-) induced root growth arrest and inhibition of stomatal closing mediated by abscisic acid (ABA). {ECO:0000269|PubMed:23275581}.,DISRUPTION PHENOTYPE: Deficient chloroplast response. {ECO:0000269|PubMed:20974974}. Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is smaller. Abnormal light-responsive chloroplast movement-M. Wada-2010 FUNCTION: Disease resistance protein of the TIR-NB-LRR-type. Part of the RPS6 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth (By similarity). Required for [5-(3,4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione-(DFPM-) induced root growth arrest due to reduced number of meristem cells in the division zone of the primary root and inhibition of abscisic acid- (ABA-) induced stomatal closing. {ECO:0000250, ECO:0000269|PubMed:23275581}.,FUNCTION: Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with WEB1 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation. {ECO:0000269|PubMed:16778016, ECO:0000269|PubMed:20974974}. 132789,70240,128004,141671,98795,89122,129677,137473,153544,41148,67043,74088,129212,125503,130415,75855,137081,94537,99116,102892,68810,148839,69648,128474,139619,133494,124331,109426 Protein VARIATION IN COMPOUND TRIGGERED ROOT growth response,Protein PLASTID MOVEMENT IMPAIRED 2 (Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2) (Protein WEB2),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein AT4g08450) (Uncharacterized protein C18G5.30),At1g31540 (Disease resistance) (Disease resistance protein (TIR-NBS-LRR class) family),Disease resistance protein (TIR-NBS-LRR class) family,At5g46490/K11I1_8 (Disease resistance protein (TIR-NBS-LRR class) family),Disease resistance protein (NBS-LRR class) family cytosol [GO:0005829]; nucleus [GO:0005634]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; regulation of root meristem growth [GO:0010082]; signal transduction [GO:0007165],cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]; response to blue light [GO:0009637],ADP binding [GO:0043531]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531],plasmodesma [GO:0009506]; ADP binding [GO:0043531]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Ubiquitous but preferentially in chloroplast-containing tissues. {ECO:0000269|PubMed:16778016, ECO:0000269|PubMed:20974974}. locus:2151476;,locus:2033399;,locus:2151491;,locus:2115870;,locus:2151516;,locus:2170408;,locus:2170488;,locus:2151466;,locus:2028681;,locus:2174900; AT5G46520,AT1G66840,AT5G46450,AT4G08450,AT5G46490,AT1G31540,AT5G46270,AT5G46260,AT5G46510,AT5G40060 protein PLASTID MOVEMENT IMPAIRED Os01g0692300 protein Q0JK73 Q0JK73_ORYSJ Os01g0692300 Os01g0692300 OSNPB_010692300 ENOG411DRKT SKIP17 Q9SY03,Q2V3L6,Q0WRC9,A0A1P8B8H9,F4JHU9,A0A1P8B8P5,A0A1P8B460,A0A1P8B5P2,A0A1P8B461,A0A1P8B447 FB219_ARATH,FB343_ARATH,SKI17_ARATH,A0A1P8B8H9_ARATH,F4JHU9_ARATH,A0A1P8B8P5_ARATH,A0A1P8B460_ARATH,A0A1P8B5P2_ARATH,A0A1P8B461_ARATH,A0A1P8B447_ARATH F-box protein At4g02760,F-box protein At4g02733,F-box protein SKIP17 (SKP1-interacting partner 17),RNI-like superfamily protein,F-box/RNI-like superfamily protein,F-box SKIP17-like protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 55475,33657,53680,52050,60291,57983,32600,41967,30260,29488 F-box protein At4g02760,F-box protein At4g02733,F-box protein SKIP17 (SKP1-interacting partner 17),RNI-like superfamily protein,F-box/RNI-like superfamily protein,F-box SKIP17-like protein nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:1009023375;,locus:2140225;,locus:2140245; AT4G02760,AT4G02733,AT4G02740 Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EKW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Os01g0936200 protein (cDNA clone:J033070N06, full insert sequence) Q0JG87 Q0JG87_ORYSJ Os01g0936200 Os01g0936200 OSNPB_010936200 ENOG411EKW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Lipase class 3 family protein, putative, expressed (Lipase, putative) (Os11g0299300 protein) Q53P41 Q53P41_ORYSJ Os11g0299300 LOC_Os11g19340 Os11g0299300 OsJ_33702 OSNPB_110299300 ENOG411EKP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM Fructose-2,6-bisphosphatase, putative (Os11g0522000 protein) (cDNA, clone: J100043H06, full insert sequence) Q2R3H9 Q2R3H9_ORYSJ Os11g0522000 LOC_Os11g31880 OSNPB_110522000 ENOG411EKWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position (By similarity) Phospholipase A1-II 3 (EC 3.1.1.-) Q8RZ40 PLA3_ORYSJ Os01g0651800 LOC_Os01g46290 OJ1159_D09.27 FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ENOG411EI8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0766800 protein Q7Y0C5 Q7Y0C5_ORYSJ OSJNBa0079B15.9 Os03g0766800 OsJ_12715 OSNPB_030766800 ENOG411EI8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET domain NA NA NA NA NA NA NA ENOG411EKWB A0A1P8B413,A0A1P8B415,F4JT30 A0A1P8B413_ARATH,A0A1P8B415_ARATH,F4JT30_ARATH Putative triglyceride lipase 92982,95230,91767 Putative triglyceride lipase hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629],chloroplast [GO:0009507]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2140832; AT4G13550 Lipase (class 3) Os04g0509100 protein A0A0P0WCB7 A0A0P0WCB7_ORYSJ Os04g0509100 OSNPB_040509100 ENOG411EI8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBX domain Os02g0523000 protein,Os02g0522600 protein,Os02g0517564 protein (Fragment) Q6H551,Q6H553,A0A0P0VJK9 Q6H551_ORYSJ,Q6H553_ORYSJ,A0A0P0VJK9_ORYSJ Os02g0523000 OsJ_06952 OSJNBa0047A17.27 OSNPB_020523000,OSJNBa0047A17.22 Os02g0522600 OSNPB_020522600,Os02g0517564 OSNPB_020517564 ENOG411EKWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatidylcholine 1-acylhydrolase activity Phospholipase A1-II 7 (EC 3.1.1.-) Q6F357 PLA7_ORYSJ Os05g0574100 LOC_Os05g49840 OJ1268_B08.4 OJ1735_C10.22 FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ENOG411EI88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI80 ORS1 Q8RWS1 ORS1_ARATH Protein ORGAN SIZE RELATED 1 DISRUPTION PHENOTYPE: When associated with ARGOS disruption, reduction in organ size. {ECO:0000269|PubMed:21457262}. Smaller organs with a c. 12% reduction in the average blade area of the fully expanded & FUNCTION: Together with ARGOS and ARL, regulates organ growth and final organ size. Promotes both cell expansion and proliferation-dependent organ growth, in an ANT-dependent manner. {ECO:0000269|PubMed:21457262}. 9628 Protein ORGAN SIZE RELATED 1 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to brassinosteroid stimulus [GO:0071367]; cellular response to ethylene stimulus [GO:0071369]; post-embryonic plant organ development [GO:0090696]; regulation of cell division [GO:0051302]; regulation of cell growth [GO:0001558]; regulation of ethylene-activated signaling pathway [GO:0010104]; regulation of response to water deprivation [GO:2000070] DEVELOPMENTAL STAGE: Detected in leaf primordia. In leaves, present in the blade and the petiole, especially at the dispersed meristematic regions and the leaf margin. Accumulates in floral organs. TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in leaves and cotyledons. {ECO:0000269|PubMed:21457262}. locus:2040302; AT2G41230 NA NA NA NA NA NA NA NA ENOG411EDG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EDG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411EDGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EDGW Q501F9 P2C67_ARATH Probable protein phosphatase 2C 67 (AtPP2C67) (EC 3.1.3.16) 3.1.3.16 41334 Probable protein phosphatase 2C 67 (AtPP2C67) (EC 3.1.3.16) cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; phosphatase activity [GO:0016791]; protein serine/threonine phosphatase activity [GO:0004722]; negative regulation of leaf senescence [GO:1900056] locus:2151256; AT5G02760 phosphatase 2C family protein NA NA NA NA NA NA NA ENOG411EDGA NAC097 Q9FGQ1,A0A1P8BFV3 Q9FGQ1_ARATH,A0A1P8BFV3_ARATH NAC domain containing protein 97 22778,17065 NAC domain containing protein 97 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2157936; AT5G50820 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EDGF PLL3 Q9SR24,F4IZX8 P2C36_ARATH,F4IZX8_ARATH Probable protein phosphatase 2C 36 (AtPP2C36) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 3) (Protein phosphatase 2C PLL3) (PP2C PLL3),Pol-like 3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16112663}. 3.1.3.16 72381,71231 Probable protein phosphatase 2C 36 (AtPP2C36) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 3) (Protein phosphatase 2C PLL3) (PP2C PLL3),Pol-like 3 nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2083539; AT3G09400 Stage II sporulation protein E (SpoIIE) NA NA NA NA NA NA NA ENOG411EDGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os01g0189800 protein,Os01g0175500 protein (cDNA clone:J023107G08, full insert sequence) (cDNA clone:J033025E12, full insert sequence) Q5SNI5,Q5VQZ6 Q5SNI5_ORYSJ,Q5VQZ6_ORYSJ Os01g0189800 OSNPB_010189800 P0710E05.10,Os01g0175500 OsJ_00579 OSJNBa0089K24.36 OSNPB_010175500 ENOG411EA3P DIT2-2 Q9FMF8 DIT22_ARATH Dicarboxylate transporter 2.2, chloroplastic (AtpDCT2) FUNCTION: May be involved in the transport of dicarboxylate compounds. {ECO:0000250}. 58747 Dicarboxylate transporter 2.2, chloroplastic (AtpDCT2) chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; transporter activity [GO:0005215]; sodium ion transport [GO:0006814]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:12154133, ECO:0000269|PubMed:12887583}. locus:2173343; AT5G64280 Sodium:sulfate symporter transmembrane region NA NA NA NA NA NA NA ENOG411EA3V INVH Q84JL5 INVH_ARATH Probable alkaline/neutral invertase A, chloroplastic (A/N-INVA) (EC 3.2.1.26) FUNCTION: Chloroplastic invertase that cleaves sucrose into glucose and fructose and may participate in the carbon flux between the cytosol and plastids in leaves. {ECO:0000250|UniProtKB:Q9FK88}. 3.2.1.26 71920 Probable alkaline/neutral invertase A, chloroplastic (A/N-INVA) (EC 3.2.1.26) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926]; sucrose alpha-glucosidase activity [GO:0004575]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:18034262}. locus:2074434; AT3G05820 Amylo-alpha-16-glucosidase NA NA NA NA NA NA NA ENOG411E468 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dehydrin Dehydrin family protein, expressed (Embryogenic-cell protein 40 (Ecp40)) (Os11g0451700 protein) Q53JR9 Q53JR9_ORYSJ Os11g0451700 LOC_Os11g26570 Os11g0451700 OSNPB_110451700 ENOG411EEMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0540100 protein A0A0P0YBN9 A0A0P0YBN9_ORYSJ Os12g0540100 OSNPB_120540100 ENOG411EEMN Q9XIB4 Y1475_ARATH B3 domain-containing protein At1g49475 21997 B3 domain-containing protein At1g49475 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:504956318; AT1G49475 B3 NA NA NA NA NA NA NA ENOG411EEMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger NA NA NA NA NA NA NA ENOG411EEMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein phosphatase 2C NA NA NA NA NA NA NA ENOG411EEMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: integrator complex subunit NA NA NA NA NA NA NA ENOG411EEME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARF NA NA NA NA NA NA NA ENOG411EEMD Q9CAM3,A0A1P8AUM0,F4I201,B3H7C5 Q9CAM3_ARATH,A0A1P8AUM0_ARATH,F4I201_ARATH,B3H7C5_ARATH Cystatin/monellin superfamily protein (Uncharacterized protein F16M19.10),Cystatin/monellin superfamily protein 24931,23033,24315,21854 Cystatin/monellin superfamily protein (Uncharacterized protein F16M19.10),Cystatin/monellin superfamily protein locus:2015173;,locus:2015258;,locus:4515102711; AT1G63200,AT1G63190,AT1G63206 EXPRESSED DURING L mature pollen stage M germinated pollen stage 4 anthesis NA NA NA NA NA NA NA ENOG411EEMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EEMF Q9SKH8 Q9SKH8_ARATH Expressed protein (Invertase/pectin methylesterase inhibitor family protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein) 21354 Expressed protein (Invertase/pectin methylesterase inhibitor family protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein) enzyme inhibitor activity [GO:0004857] locus:2041867; AT2G10970 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EEMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide methionine sulfoxide reductase NA NA NA NA NA NA NA ENOG411EEMC VUP3 Q56YT7,B3H6S0,A0A1I9LSZ1 Q56YT7_ARATH,B3H6S0_ARATH,A0A1I9LSZ1_ARATH Uncharacterized protein FUNCTION: Involved in the regulation of plant growth. {ECO:0000269|PubMed:24567189}. MISCELLANEOUS: Plants overexpressing VUP3 exhibit severe dwarfism. {ECO:0000269|PubMed:24567189}. 14575,12120,10626 Uncharacterized protein locus:1009023249; AT3G20557 Inherit from KOG: Endoplasmic reticulumgolgi intermediate compartment protein NA NA NA NA NA NA NA ENOG411EEMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Anthocyanin 5-aromatic acyltransferase NA NA NA NA NA NA NA ENOG411EEMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEMU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EEMT MSRB5 F4JGY0 F4JGY0_ARATH Methionine sulfoxide reductase B5 14022 Methionine sulfoxide reductase B5 peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; protein repair [GO:0030091]; response to oxidative stress [GO:0006979] AT4G04830 methionine sulfoxide reductase domain-containing protein NA NA NA NA NA NA NA ENOG411EEMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411EEMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EEMQ Q5XVC1 Q5XVC1_ARATH Uncharacterized protein 14991 Uncharacterized protein locus:1006230186; AT3G05725 Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411EEMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411EEMS F4IKW4 F4IKW4_ARATH F-box family protein 10939 F-box family protein locus:5019474739; AT2G41473 FBOX NA NA NA NA NA NA NA ENOG411EEMR Q9C777,A8MQA7,A0A1I9LRY9,A0A1I9LRZ0 YIPL3_ARATH,A8MQA7_ARATH,A0A1I9LRY9_ARATH,A0A1I9LRZ0_ARATH Protein yippee-like At3g11230,Protein yippee-like R-ATH-6798695; 14753,18635,12207,16090 Protein yippee-like At3g11230,Protein yippee-like metal ion binding [GO:0046872] locus:2074708; AT3G11230 Pfam:Yippee NA NA NA NA NA NA NA ENOG411EEM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PbH1 NA NA NA NA NA NA NA ENOG411EEM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEM5 MHM17.3,MHM17.11,MHM17.2 Q9LTS8,Q5XUY6,Q9LTS9,F4JK76,A0A1P8BF61,F4JK75 Q9LTS8_ARATH,Q5XUY6_ARATH,Q9LTS9_ARATH,F4JK76_ARATH,A0A1P8BF61_ARATH,F4JK75_ARATH Cystatin/monellin superfamily protein,Proteinase inhibitor I25, cystatin, motif protein,Proteinase inhibitor I25, cystatin, conserved region (Uncharacterized protein At5g56910) (Uncharacterized protein At5g56910/MHM17_2),Proteinase inhibitor I25, cystatin, conserved region,Cystatin-like protein 26483,15194,25977,12859,15795,20405 Cystatin/monellin superfamily protein,Proteinase inhibitor I25, cystatin, motif protein,Proteinase inhibitor I25, cystatin, conserved region (Uncharacterized protein At5g56910) (Uncharacterized protein At5g56910/MHM17_2),Proteinase inhibitor I25, cystatin, conserved region,Cystatin-like protein locus:2164650;,locus:2164635;,locus:2164640;,locus:504955421;,locus:2130629; AT5G56920,AT5G56990,AT5G56910,AT4G15715,AT4G15710 Has 27 Blast hits to 27 proteins in 2 species Archae - 0 NA NA NA NA NA NA NA ENOG411EEM4 Q9LF08 Q9LF08_ARATH 50S ribosomal protein-like protein (At5g16200) (Uncharacterized protein T21H19_120) 18511 50S ribosomal protein-like protein (At5g16200) (Uncharacterized protein T21H19_120) ribosome [GO:0005840] locus:2181397; AT5G16200 NA NA NA NA NA NA NA NA ENOG411EEM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411EEM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VIT family Vacuolar iron transporter homolog 4 (Protein NODULIN-LIKE 4),Os11g0161900 protein,Os01g0280300 protein Q53PN2,A0A0P0XZN4,A0A0P0V1G0 VITH4_ORYSJ,A0A0P0XZN4_ORYSJ,A0A0P0V1G0_ORYSJ Os11g0161900 LOC_Os11g06310,Os11g0161900 OSNPB_110161900,Os01g0280300 OSNPB_010280300 FUNCTION: Probable vacuolar iron transporter that may be involved in the regulation of iron distribution throughout the plant. {ECO:0000250}. ENOG411EEM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0259800 protein A0A0P0XJ18 A0A0P0XJ18_ORYSJ Os09g0259800 OSNPB_090259800 ENOG411EEM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Alpha beta hydrolase NA NA NA NA NA NA NA ENOG411EEM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XH domain NA NA NA NA NA NA NA ENOG411DSP5 SKI3 F4I3Z5,A0A1P8AR19,F4I3Z6 SKI3_ARATH,A0A1P8AR19_ARATH,F4I3Z6_ARATH Tetratricopeptide repeat protein SKI3 (Protein SKI3 homolog) (AtSKI3),Tetratricopeptide repeat (TPR)-like superfamily protein FUNCTION: Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C). {ECO:0000269|PubMed:22511887}. R-ATH-429958; 129877,110727,126818 Tetratricopeptide repeat protein SKI3 (Protein SKI3 homolog) (AtSKI3),Tetratricopeptide repeat (TPR)-like superfamily protein cytoplasm [GO:0005737]; Ski complex [GO:0055087]; DNA binding [GO:0003677]; nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [GO:0070478]; posttranscriptional gene silencing [GO:0016441]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2011666; AT1G76630 tetratricopeptide repeat Os10g0548200 protein (TPR Domain containing protein, expressed) (cDNA clone:J033133L07, full insert sequence),Os10g0548200 protein (Fragment) Q336U8,A0A0P0XWW0 Q336U8_ORYSJ,A0A0P0XWW0_ORYSJ LOC_Os10g40050 Os10g0548200 OsJ_32362 OSNPB_100548200,Os10g0548200 OSNPB_100548200 ENOG411E1WN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os06g0195800 protein (Fragment) A0A0N7KLP7 A0A0N7KLP7_ORYSJ Os06g0195800 OSNPB_060195800 ENOG411E1WM PCMP-E74 Q9SJ73 PP148_ARATH Pentatricopeptide repeat-containing protein At2g04860 76652 Pentatricopeptide repeat-containing protein At2g04860 chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425] locus:2049249; AT2G04860 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DYQ9 JAL3 F4HQX1 JAL3_ARATH Jacalin-related lectin 3 (Mannose-binding lectin superfamily protein) 65645 Jacalin-related lectin 3 (Mannose-binding lectin superfamily protein) carbohydrate binding [GO:0030246] locus:1005716765; AT1G19715 Jacalin Os05g0508400 protein Q6L4X6 Q6L4X6_ORYSJ Os05g0508400 OSJNBb0108E17.3 OSNPB_050508400 ENOG411DYQ3 A0A1P8B5A3,F4JT13 A0A1P8B5A3_ARATH,F4JT13_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 36254,39987 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein locus:2142090; AT4G13400 Inherit from euNOG: Conserved hypothetical protein Os05g0556000 protein (cDNA clone:001-021-E08, full insert sequence) (cDNA clone:J023150E08, full insert sequence) Q6I615 Q6I615_ORYSJ Os05g0556000 Os05g0556000 OJ1214_E03.4 OSNPB_050556000 ENOG411DYQ6 Q9C5M7,A0A1P8B1W4,A0A1P8B1V8,A0A1P8B1W9,F4IN40,F4IN39 Q9C5M7_ARATH,A0A1P8B1W4_ARATH,A0A1P8B1V8_ARATH,A0A1P8B1W9_ARATH,F4IN40_ARATH,F4IN39_ARATH Spliceosome protein-like protein (Uncharacterized protein At1g54380),Survival motor neuron interacting protein 58339,49413,48385,39930,59495,72582 Spliceosome protein-like protein (Uncharacterized protein At1g54380),Survival motor neuron interacting protein alternative mRNA splicing, via spliceosome [GO:0000380]; cellular response to cold [GO:0070417]; spliceosomal snRNP assembly [GO:0000387] locus:2020028;,locus:2041564; AT1G54380,AT2G42510 Survival motor neuron (SMN) interacting protein 1 (SIP1) Os11g0293300 protein (Survival motor neuron (SMN) interacting protein 1 (SIP1), putative) (Survival motor neuron containing protein, expressed) Q53MI2 Q53MI2_ORYSJ LOC_Os11g18830 Os11g0293300 OsJ_33670 OSNPB_110293300 ENOG411DYQ7 XI-F,XIF F4IRU3,A0A1P8AXI9,A0A1P8AXI6,A0A1P8AXP2 MYO12_ARATH,A0A1P8AXI9_ARATH,A0A1P8AXI6_ARATH,A0A1P8AXP2_ARATH Myosin-12 (Myosin XI F) (AtXIF),Myosin-like protein XIF FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250}. 176970,164558,148581,177098 Myosin-12 (Myosin XI F) (AtXIF),Myosin-like protein XIF unconventional myosin complex [GO:0016461]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],myosin complex [GO:0016459]; ATP binding [GO:0005524]; motor activity [GO:0003774],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774] TISSUE SPECIFICITY: Preferentially expressed in stems. {ECO:0000269|PubMed:7811972}. locus:2045198; AT2G31900 MYSc Os03g0747900 protein (Fragment) Q0DNL1 Q0DNL1_ORYSJ Os03g0747900 Os03g0747900 OSNPB_030747900 ENOG411DYQJ Q8RY12 Q8RY12_ARATH AT5g20600/F7C8_190 (Ribosomal RNA processing-like protein) (Uncharacterized protein At5g20600) 59990 AT5g20600/F7C8_190 (Ribosomal RNA processing-like protein) (Uncharacterized protein At5g20600) cytosol [GO:0005829]; nucleus [GO:0005634]; preribosome, large subunit precursor [GO:0030687]; preribosome, small subunit precursor [GO:0030688]; rRNA processing [GO:0006364] locus:2149952; AT5G20600 Nucleolar proteinNop52 containing protein Os04g0658600 protein (Fragment) Q0J9E4,A0A0P0WG38 Q0J9E4_ORYSJ,A0A0P0WG38_ORYSJ Os04g0658600 Os04g0658600 OSNPB_040658600,Os04g0658600 OSNPB_040658600 ENOG411DYQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os12g0513300 protein,Os12g0513500 protein,Os09g0540300 protein,Os12g0513700 protein Q2QPY3,Q2QPY1,A0A0P0XPY3,A0A0P0YB05 Q2QPY3_ORYSJ,Q2QPY1_ORYSJ,A0A0P0XPY3_ORYSJ,A0A0P0YB05_ORYSJ Os12g0513300 LOC_Os12g32880 OsJ_36271 OSNPB_120513300,Os12g0513500 LOC_Os12g32900 OsJ_36272 OSNPB_120513500,Os09g0540300 OSNPB_090540300,Os12g0513700 OSNPB_120513700 ENOG411DYQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os08g0408200 protein (Putative Trp-Asp repeat protein) (cDNA clone:J023019D09, full insert sequence) Q6Z9W0 Q6Z9W0_ORYSJ Os08g0408200 Os08g0408200 OSNPB_080408200 P0453D01.33 ENOG411DYQM HEL P43082 HEVL_ARATH Hevein-like preproprotein [Cleaved into: CB-HEL; CD-HEL (EC 3.1.-.-) (RNase)] FUNCTION: Fungal growth inhibitors. Neither CB-HEL nor CD-HEL have chitinase activity, but both have antimicrobial activities. CD-HEL has RNase, but no DNase activity. {ECO:0000269|PubMed:22868784}. 3.1.-.- 22937 Hevein-like preproprotein [Cleaved into: CB-HEL; CD-HEL (EC 3.1.-.-) (RNase)] vacuole [GO:0005773]; chitin binding [GO:0008061]; ribonuclease activity [GO:0004540]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; killing of cells of other organism [GO:0031640]; response to ethylene [GO:0009723]; response to herbivore [GO:0080027]; response to salt stress [GO:0009651]; response to virus [GO:0009615]; systemic acquired resistance [GO:0009627] locus:2084918; AT3G04720 wound-induced protein NA NA NA NA NA NA NA ENOG411DYQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411DYQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os09g0468800 protein (Fragment) A0A0N7KQY8 A0A0N7KQY8_ORYSJ Os09g0468800 OSNPB_090468800 ENOG411DYQE KAI2 Q9SZU7 KAI2_ARATH Probable esterase KAI2 (Protein DWARF-14-like) (Protein D14-like) (Protein HYPOSENSITIVE TO LIGHT) (Protein KARRIKIN INSENSITIVE 2) DISRUPTION PHENOTYPE: Increased seed dormancy. Long hypocotyl phenotype under red, far-red, and blue light. {ECO:0000269|PubMed:20864454, ECO:0000269|PubMed:22357928}. Mutant seedlings displayed a long hypocotyl phenotype under red far-red and blue light. Long hypocotyls and petioles and small cotyledons and leaves under red, far-red, and blue light-M. Ni-2011 FUNCTION: Involved in seed germination and seedling development. Essential for plant responses to karrikins, a class of butenolide compounds, structurally similar to strigolactones, released from burning vegetation that stimulate seed germination and enhance seedling photomorphogenesis. KAI2 is not required for strigolactone-mediated responses, but MAX2 is necessary for responses to karrikins and strigolactones (PubMed:20864454, PubMed:22357928, PubMed:23142794, PubMed:23301669). Lacks detectable hydrolase activity against karrikin (PubMed:23613584). Karrikin binding induces a conformational change (PubMed:23613584). {ECO:0000269|PubMed:20864454, ECO:0000269|PubMed:22357928, ECO:0000269|PubMed:23142794, ECO:0000269|PubMed:23301669, ECO:0000269|PubMed:23613584}. 29791 Probable esterase KAI2 (Protein DWARF-14-like) (Protein D14-like) (Protein HYPOSENSITIVE TO LIGHT) (Protein KARRIKIN INSENSITIVE 2) cytosol [GO:0005829]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; de-etiolation [GO:0009704]; photomorphogenesis [GO:0009640]; response to karrikin [GO:0080167]; secondary shoot formation [GO:0010223]; strigolactone biosynthetic process [GO:1901601] TISSUE SPECIFICITY: In young seedlings, expressed in hypocotyls and roots. In adult plants, expressed in rosette leaves, stigma, sepals and silique peduncles and tips. {ECO:0000269|PubMed:20864454}. locus:2126357; AT4G37470 Sigma factor sigB regulation protein Probable esterase D14L (Protein DWARF-14-like) (Protein D14-like) (Protein HEBIBA D14L),Os03g0437600 protein (Fragment) Q10J20,A0A0P0VZ11 D14L_ORYSJ,A0A0P0VZ11_ORYSJ D14L Os03g0437600 LOC_Os03g32270; Os11g0384789,Os03g0437600 OSNPB_030437600 DISRUPTION PHENOTYPE: Loss of responsiveness to and symbiosis with the arbuscular mycorrhizal fungi (AMF) Rhizophagus irregularis and Gigaspora rosea characterized by the absence of physical contact and of characteristic transcriptional responses to fungal signals. {ECO:0000269|PubMed:26680197}. FUNCTION: May be involved in strigolactone signaling pathway (By similarity). Essential for plant responses to karrikins, a class of butenolide compounds, structurally similar to strigolactones, released from burning vegetation that stimulate seed germination and enhance seedling photomorphogenesis. Mediates a specific perception of karrikin. Required for the establishment of symbiosis with the arbuscular mycorrhizal fungi (AMF) Rhizophagus irregularis and Gigaspora rosea (PubMed:26680197). Karrikin binding induces a conformational change (By similarity). {ECO:0000250|UniProtKB:Q10QA5, ECO:0000250|UniProtKB:Q9SZU7, ECO:0000269|PubMed:26680197}. ENOG411DYQX UBA2C,MSF3.21 Q9LKA4,O64613 UBA2C_ARATH,O64613_ARATH UBP1-associated protein 2C,RNA-binding (RRM/RBD/RNP motif) family protein (Uncharacterized protein At2g18830) FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity). {ECO:0000250}. MISCELLANEOUS: Plants over-expressing UB2A1 display severe growth defects consisting of premature cell death and chlorosis. {ECO:0000305|PubMed:18705666}. 41780,7524 UBP1-associated protein 2C,RNA-binding (RRM/RBD/RNP motif) family protein (Uncharacterized protein At2g18830) nucleolus [GO:0005730]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; cell death [GO:0008219]; defense response [GO:0006952]; ethylene biosynthetic process [GO:0009693]; leaf senescence [GO:0010150] TISSUE SPECIFICITY: Expressed in root apical and lateral meristems, young leaves and embryos. {ECO:0000269|PubMed:18278441}. locus:2086325;,locus:2044445; AT3G15010,AT2G18830 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DYQY F11B9.1 Q9C773 Q9C773_ARATH Duplicated homeodomain-like superfamily protein (MYB transcription factor) (MYB-family transcription factor, putative; alternative splicing isoform 2 of 2;71559-70643 (Myb-family transcription factor, putative; alternative splicing isoform 1 of 2;71559-70643)) (Putative MYB-family transcription factor) 29608 Duplicated homeodomain-like superfamily protein (MYB transcription factor) (MYB-family transcription factor, putative; alternative splicing isoform 2 of 2;71559-70643 (Myb-family transcription factor, putative; alternative splicing isoform 1 of 2;71559-70643)) (Putative MYB-family transcription factor) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; response to gibberellin [GO:0009739]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] locus:2074723; AT3G11280 transcription factor NA NA NA NA NA NA NA ENOG411DYQR 3AT1,3AT2,5MAT,PMAT2 Q9ZWB4,Q9LR73,Q9LJB4,Q9LRQ8 3AT1_ARATH,3AT2_ARATH,5MAT_ARATH,PMAT2_ARATH Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC 2.3.1.-),Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2 (EC 2.3.1.-),Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase (EC 2.3.1.-) (Anthocyanin 5-aromatic acyltransferase-like protein) (At5MAT),Phenolic glucoside malonyltransferase 2 (EC 2.3.1.-) DISRUPTION PHENOTYPE: No visible phenotype, probably due to the redundancy with 3AT2. {ECO:0000269|PubMed:17425720}.,DISRUPTION PHENOTYPE: No visible phenotype, probably due to the redundancy with 3AT1. {ECO:0000269|PubMed:17425720}.,DISRUPTION PHENOTYPE: Absence of malonyl-modified anthocyanins. {ECO:0000269|PubMed:17292360, ECO:0000269|PubMed:17425720}. FUNCTION: Involved in the acylation of the 6'' position of the 3-O-glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor. {ECO:0000269|PubMed:17425720}.,FUNCTION: Involved in the malonylation of the 5-O-glucose residue of anthocyanin. Acts only on anthocyanin substrates containing a 5-O glucosyl moiety. Not able to catalyze acyl transfer using acetyl-CoA, butyryl-CoA, hexanoyl- CoA, benzoyl-CoA, cinnamoyl-CoA, methylmalonyl-CoA, succinyl-CoA, p-coumaroyl-CoA or caffeoyl-CoA. {ECO:0000269|PubMed:17292360, ECO:0000269|PubMed:17425720}.,FUNCTION: Malonyltransferase acting on xenobiotic glucosides. Has activity toward 2-Naphthol glucoside (2NAG), 1-Naphthol glucoside (1NAG), kaempferol 7-O-glucoside, hydroxycoumarin glucosides and phenol-glucosides, but not toward kaempferol 3-O-glucoside or daidzin. Prefers phenol glucosides rather than naphtol glucosides. In vivo, seems to be involved in the malonylation of 4-methylumbelliferone glucoside or 4-nitrophenyl glucoside while PMAT1 would be involved in the malonylation of 2-Naphthol glucoside. {ECO:0000269|PubMed:20626660}. ARA:AT1G03940-MONOMER;MetaCyc:MONOMER-18503;,ARA:AT1G03495-MONOMER;MetaCyc:MONOMER-18504;,ARA:AT3G29590-MONOMER;MetaCyc:MONOMER-18509;,ARA:AT3G29670-MONOMER;MetaCyc:AT3G29670-MONOMER; 2.3.1.172; 2.3.1.- 51926,51399,49440,50217 Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC 2.3.1.-),Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2 (EC 2.3.1.-),Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase (EC 2.3.1.-) (Anthocyanin 5-aromatic acyltransferase-like protein) (At5MAT),Phenolic glucoside malonyltransferase 2 (EC 2.3.1.-) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],O-malonyltransferase activity [GO:0050736]; anthocyanin-containing compound biosynthetic process [GO:0009718],O-malonyltransferase activity [GO:0050736]; response to toxic substance [GO:0009636] TISSUE SPECIFICITY: Highly expressed in flowers, leaves and roots. Lower levels of expression in stems and siliques. {ECO:0000269|PubMed:17425720}.,TISSUE SPECIFICITY: Highly expressed in flowers, and leaves. Lower levels of expression in stems, roots and siliques. {ECO:0000269|PubMed:17425720}.,TISSUE SPECIFICITY: Expressed in flowers. Detected in leaves, stems, roots and siliques. {ECO:0000269|PubMed:17425720}. locus:2024127;,locus:2825047;,locus:2093620;,locus:2091798; AT1G03940,AT1G03495,AT3G29590,AT3G29670 Anthocyanin 5-aromatic Os02g0820400 protein (Putative anthocyanin acyltransferase) (cDNA clone:001-019-D06, full insert sequence),Os02g0289500 protein (Fragment) Q6K714,A0A0P0VHS8 Q6K714_ORYSJ,A0A0P0VHS8_ORYSJ Os02g0820400 OJ1202_E07.32 OsJ_08902 OSNPB_020820400 P0474F11.13,Os02g0289500 OSNPB_020289500 ENOG411DYQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B1159F04.1 protein (OSJNBb0046K02.12 protein) (Os04g0332700 protein) (cDNA clone:J023119D23, full insert sequence),Os08g0343400 protein,Os08g0343501 protein Q7XK87,A0A0P0XEU7,A0A0N7KPP8 Q7XK87_ORYSJ,A0A0P0XEU7_ORYSJ,A0A0N7KPP8_ORYSJ B1159F04.1 Os04g0332700 OsJ_14288 OSJNBb0046K02.12 OSNPB_040332700,Os08g0343400 OSNPB_080343400,Os08g0343501 OSNPB_080343501 ENOG411DYQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os01g0673900 protein (Fragment) Q0JKH8 Q0JKH8_ORYSJ Os01g0673900 Os01g0673900 OSNPB_010673900 ENOG411EKV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type II intron maturase NA NA NA NA NA NA NA ENOG411DYQV SULTR3;3,AST91 Q9SXS2,A0A1P8AM96 SUT33_ARATH,A0A1P8AM96_ARATH Probable sulfate transporter 3.3 (AST91),Sulfate transporter 91 Small rosette leaves; Early flowering; Slightly elevated sulfate content in seeds-K. Gallardo-2010 FUNCTION: H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation. {ECO:0000250}. R-ATH-174362;R-ATH-427601; 69070,54725 Probable sulfate transporter 3.3 (AST91),Sulfate transporter 91 integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293],integral component of membrane [GO:0016021]; secondary active sulfate transmembrane transporter activity [GO:0008271] TISSUE SPECIFICITY: Expressed only in leaves. {ECO:0000269|Ref.4}. locus:2201220; AT1G23090 sulfate transporter Os04g0652400 protein (cDNA clone:001-042-A04, full insert sequence),Os04g0652400 protein Q0J9H5,A0A0P0WFZ5 Q0J9H5_ORYSJ,A0A0P0WFZ5_ORYSJ Os04g0652400 Os04g0652400 OSNPB_040652400,Os04g0652400 OSNPB_040652400 ENOG411DYQW A0A1P8BCP5,Q8GYX6,F4JXV3,A0A1P8BCN9,A0A1P8BD97,A0A1P8BD85,A0A1P8AZ23,F4JWU1,A8MS19,F4ISL5,A0A1I9LQX4 A0A1P8BCP5_ARATH,Q8GYX6_ARATH,F4JXV3_ARATH,A0A1P8BCN9_ARATH,A0A1P8BD97_ARATH,A0A1P8BD85_ARATH,A0A1P8AZ23_ARATH,F4JWU1_ARATH,A8MS19_ARATH,F4ISL5_ARATH,A0A1I9LQX4_ARATH SPOC domain / Transcription elongation factor S-II protein,Putative PHD finger protein (SPOC domain / Transcription elongation factor S-II protein),Uncharacterized protein 77035,80624,96429,70717,110255,86081,75564,109135,20591,81197,14266 SPOC domain / Transcription elongation factor S-II protein,Putative PHD finger protein (SPOC domain / Transcription elongation factor S-II protein),Uncharacterized protein translation elongation factor activity [GO:0003746]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; translation elongation factor activity [GO:0003746]; transcription, DNA-templated [GO:0006351] locus:2144211;,locus:2179419;,locus:4010713788;,locus:2050311; AT5G25520,AT5G11430,AT3G29639,AT2G25640 transcription elongation factor S-II Os06g0595900 protein (Fragment) A0A0P0WY80 A0A0P0WY80_ORYSJ Os06g0595900 OSNPB_060595900 ENOG411DYQU LFG5 Q94A20 LFG5_ARATH BI1-like protein (Protein LIFEGUARD 5) (AtLFG5) 28168 BI1-like protein (Protein LIFEGUARD 5) (AtLFG5) integral component of membrane [GO:0016021] locus:2130190; AT4G15470 Pfam:UPF0005 Os05g0402300 protein (cDNA clone:J023039E14, full insert sequence) Q6ATX8 Q6ATX8_ORYSJ Os05g0402300 OsJ_18485 OSJNBa0035J16.16 OSJNBb0006J12.3 OSNPB_050402300 ENOG411E6G4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger NA NA NA NA NA NA NA ENOG411E6G5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: LTV1 homolog (S. cerevisiae) Os07g0634300 protein (cDNA clone:002-149-C09, full insert sequence) Q7XI60 Q7XI60_ORYSJ P0455H11.114 Os07g0634300 OSNPB_070634300 ENOG411E8EB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8EP ATL19 Q9C919 ATL19_ARATH Putative RING-H2 finger protein ATL19 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL19) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 19890 Putative RING-H2 finger protein ATL19 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL19) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2011491; AT1G53010 RING NA NA NA NA NA NA NA ENOG411E8ER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8EX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II reaction centre X protein (PsbX) NA NA NA NA NA NA NA ENOG411E8EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7Q4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0210500 protein (Fragment),Os11g0247000 protein (Fragment) A0A0P0Y833,A0A0P0Y0Z1 A0A0P0Y833_ORYSJ,A0A0P0Y0Z1_ORYSJ Os12g0210500 OSNPB_120210500,Os11g0247000 OSNPB_110247000 ENOG411E8E2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E783 Q9ZPY5 Q9ZPY5_ARATH At2g46540/F11C10.23 (Expressed protein) (F11C10.23/F11C10.23) (Fiber) 6803 At2g46540/F11C10.23 (Expressed protein) (F11C10.23/F11C10.23) (Fiber) membrane [GO:0016020]; mitochondrion [GO:0005739]; response to cytokinin [GO:0009735] locus:2039998; AT2G46540 Fiber protein Fb11 Os01g0705500 protein,Os05g0542100 protein (Putative fiber protein) (cDNA clone:J023027J05, full insert sequence) Q0JK04,Q5TKP1 Q0JK04_ORYSJ,Q5TKP1_ORYSJ Os01g0705500 Os01g0705500 OsJ_03181 OSNPB_010705500,Os05g0542100 OJ1362_G11.16 OsJ_19399 OSNPB_050542100 ENOG411EC9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEXDc2 NA NA NA NA NA NA NA ENOG411DSFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DSFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411E6G0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E78U T32N4.11 Q9S9T4,A0A1P8B7K1 Q9S9T4_ARATH,A0A1P8B7K1_ARATH AT4g05030 protein (Copper transport protein family) (T32N4.11 protein),Copper transport protein family 11890,8246 AT4g05030 protein (Copper transport protein family) (T32N4.11 protein),Copper transport protein family cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2138376; AT4G05030 NA NA NA NA NA NA NA NA ENOG411E78Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF NA NA NA NA NA NA NA ENOG411E78B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Expressed protein (Os12g0278900 protein),Os12g0279800 protein,Os04g0405750 protein Q2QTY1,Q2QTX3,A0A0P0W9T0 Q2QTY1_ORYSJ,Q2QTX3_ORYSJ,A0A0P0W9T0_ORYSJ Os12g0278900 LOC_Os12g18130 Os12g0278900 OSNPB_120278900,Os12g0279800 LOC_Os12g18210 OsJ_35764 OSNPB_120279800,Os04g0405750 OSNPB_040405750 ENOG411E78H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E78K MBD6 Q9LTJ1 MBD6_ARATH Methyl-CpG-binding domain-containing protein 6 (AtMBD6) (MBD06) (Methyl-CpG-binding protein MBD6) DISRUPTION PHENOTYPE: Impaired nucleolar dominance. {ECO:0000269|PubMed:19061642}. FUNCTION: Transcriptional regulator that binds CpG, CpNpN and CpNpG (N is A, T, or C) islands in promoters regardless the DNA methylation status. Plays probably a role in gene silencing. May associate with histone deacetylase proteins (HDAC). Required for nucleolar dominance that consist in the silencing of rRNA genes inherited from one progenitor in genetic hybrids. Recruited to rRNA genes in a DRM2-dependent manner. {ECO:0000269|PubMed:12787239, ECO:0000269|PubMed:14605234, ECO:0000269|PubMed:15010609, ECO:0000269|PubMed:19061642}. 24450 Methyl-CpG-binding domain-containing protein 6 (AtMBD6) (MBD06) (Methyl-CpG-binding protein MBD6) nuclear heterochromatin [GO:0005720]; nucleolus organizer region [GO:0005731]; nucleus [GO:0005634]; perinucleolar chromocenter [GO:0010370]; enzyme binding [GO:0019899]; methyl-CpG binding [GO:0008327]; protein self-association [GO:0043621]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in rosette leaves, buds, flowers, stems, mature seeds and roots. {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:15010609}. locus:2148308; AT5G59380 Methyl-CpG binding domain NA NA NA NA NA NA NA ENOG411DSFY ASP1 P46643 AAT1_ARATH Aspartate aminotransferase, mitochondrial (EC 2.6.1.1) (Transaminase A) FUNCTION: Amino acid aminotransferase important for the metabolism of amino acids and Krebs-cycle related organic acids. No activity with D-Asp or D-Ala as amino donors. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. {ECO:0000269|PubMed:18318836, ECO:0000269|PubMed:7894512, ECO:0000269|PubMed:9535706, ECO:0000269|PubMed:9611168}. MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes. R-ATH-389661;R-ATH-70263;R-ATH-70614; 2.6.1.1 47758 Aspartate aminotransferase, mitochondrial (EC 2.6.1.1) (Transaminase A) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; 2-oxoglutarate metabolic process [GO:0006103]; aspartate metabolic process [GO:0006531]; biosynthetic process [GO:0009058]; glutamate metabolic process [GO:0006536]; response to cadmium ion [GO:0046686] locus:2052851; AT2G30970 Aspartate aminotransferase Aspartate aminotransferase (EC 2.6.1.1) Q6EUS6,Q0DBN4 Q6EUS6_ORYSJ,Q0DBN4_ORYSJ Os02g0236000 Os02g0236000 OJ1077_A12.15 OsJ_06017 OSNPB_020236000,Os06g0548000 Os06g0548000 OSNPB_060548000 MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes. {ECO:0000256|RuleBase:RU000480}. ENOG411DXXH SBT1.9 Q9FHA4 SBT19_ARATH Subtilisin-like protease SBT1.9 (EC 3.4.21.-) (Subtilase subfamily 1 member 9) (AtSBT1.9) ARA:AT5G67090-MONOMER; 3.4.21.- 79777 Subtilisin-like protease SBT1.9 (EC 3.4.21.-) (Subtilase subfamily 1 member 9) (AtSBT1.9) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252]; proteolysis [GO:0006508] locus:2155583; AT5G67090 subtilisin-like Os05g0435800 protein (Putative subtilisin-like proteinase),Os01g0868900 protein (Putative subtilisin-like protease),Os01g0868900 protein (Fragment) Q6I5K9,Q8S1N3,A0A0P0VAU9 Q6I5K9_ORYSJ,Q8S1N3_ORYSJ,A0A0P0VAU9_ORYSJ Os05g0435800 OsJ_18665 OSJNBb0088F07.10 OSNPB_050435800,Os01g0868900 Os01g0868900 OSNPB_010868900 P0677H08.26,Os01g0868900 OSNPB_010868900 ENOG411DXXI PCMP-H40 Q3E6Q1 PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 22) DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity. {ECO:0000269|PubMed:19182104}. FUNCTION: Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 7 of ndhB (ndhB-7) and site 5 of ndhD (ndhD-5) transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Involved in the editing of the site 3 of rpoB (rpoB-3) transcript. Required for the activity of the NDH complex of the photosynthetic electron transport chain. Possesses low endoribonuclease activity in vitro. {ECO:0000269|PubMed:19182104}. MISCELLANEOUS: The DYW motif is dispensable for editing activity in vivo. {ECO:0000269|PubMed:19182104}. 90866 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 22) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mRNA modification [GO:0016556]; mRNA processing [GO:0006397] locus:2202074; AT1G11290 Pentatricopeptide repeat-containing protein Os06g0112000 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J033126M02, full insert sequence) Q9LHZ4 Q9LHZ4_ORYSJ Os06g0112000 OSNPB_060112000 P0029D06.20 ENOG411DXXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bHLH transcription factor BHLH transcription factor PTF1 (Os06g0193400 protein) (cDNA clone:J013042L14, full insert sequence),Os06g0193400 protein Q69Y52,A0A0P0WU03 Q69Y52_ORYSJ,A0A0P0WU03_ORYSJ P0698A06.26-1 Os06g0193400 OsJ_20430 OSNPB_060193400,Os06g0193400 OSNPB_060193400 ENOG411DXXK SYP51,SYP52 Q9SA23,Q94KK7,A0A1P8AW43,A0A1P8ARR3,A0A1P8AW52,F4I2U8,A8MRW0,F4I2U7 SYP51_ARATH,SYP52_ARATH,A0A1P8AW43_ARATH,A0A1P8ARR3_ARATH,A0A1P8AW52_ARATH,F4I2U8_ARATH,A8MRW0_ARATH,F4I2U7_ARATH Syntaxin-51 (AtSYP51),Syntaxin-52 (AtSYP52),Target SNARE coiled-coil domain protein,Syntaxin of plants 52,Syntaxin of plants 51 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. MISCELLANEOUS: SYP51 and SYP52 may have redundant functions. The exact location of the SYP51/SYP61 complex is unclear, but is probably on the trans-Golgi network because of the likelihood of containing chiefly VTI12.,MISCELLANEOUS: SYP51 and SYP52 may have redundant functions. 25889,26108,25122,29739,15730,21871,25524,22346 Syntaxin-51 (AtSYP51),Syntaxin-52 (AtSYP52),Target SNARE coiled-coil domain protein,Syntaxin of plants 52,Syntaxin of plants 51 endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; vacuole [GO:0005773]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],intracellular [GO:0005622]; membrane [GO:0016020]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Expressed in root, leaf, stem, flower and silique. locus:2032835;,locus:2019858;,locus:2032815;,locus:504956222; AT1G16240,AT1G79590,AT1G16230,AT1G16225 syntaxin of plants Os02g0119400 protein (Putative syntaxin of plants 52) (cDNA clone:006-305-D08, full insert sequence) (cDNA clone:J033107H09, full insert sequence),Os08g0277900 protein (Putative syntaxin of plants 52) (cDNA clone:J023133F24, full insert sequence) Q6YUT2,Q6Z1L9 Q6YUT2_ORYSJ,Q6Z1L9_ORYSJ Os02g0119400 Os02g0119400 OJ1217_F02.19 OsJ_05145 OSJNBb0088N06.3 OSNPB_020119400,Os08g0277900 OSJNBa0091M20.18 OSNPB_080277900 ENOG411DXXM BAG7 Q9LVA0 BAG7_ARATH BAG family molecular chaperone regulator 7 (Bcl-2-associated athanogene 7) DISRUPTION PHENOTYPE: Susceptibility to heat and cold stress. {ECO:0000269|PubMed:20231441}. AtBAG7 knockouts treated with tunicamycin an inhibitor of glycosylation exhibited pronounced growth retardation and chlorosis after 5 days. Sensitive to high and low temperature and tunicamycin (inducer of the unfolded protein response)-M. Dickman-2010 FUNCTION: Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses. Necessary for the proper maintenance of the unfolded protein response (UPR) during heat and cold tolerance. {ECO:0000269|PubMed:20231441}. 51567 BAG family molecular chaperone regulator 7 (Bcl-2-associated athanogene 7) endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calmodulin binding [GO:0005516]; chaperone binding [GO:0051087]; cellular response to cold [GO:0070417]; cellular response to heat [GO:0034605]; cellular response to unfolded protein [GO:0034620]; protein folding [GO:0006457]; response to external biotic stimulus [GO:0043207] locus:2167943; AT5G62390 IQ calmodulin-binding motif family protein Os06g0104400 protein,Calmodulin-binding protein-like (Os02g0105500 protein) (cDNA clone:001-123-C12, full insert sequence) (cDNA clone:J033115E12, full insert sequence),Calmodulin-binding protein-like (Os06g0104400 protein) Q0DFA8,Q6ETD9,Q5VS79 Q0DFA8_ORYSJ,Q6ETD9_ORYSJ,Q5VS79_ORYSJ Os06g0104400 Os06g0104400 OSNPB_060104400,Os02g0105500 Os02g0105500 OJ1359_D06.7 OsJ_05024 OSNPB_020105500,P0644B06.3-1 Os06g0104400 OSNPB_060104400 ENOG411DXXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0121500 protein (cDNA clone:J013043N01, full insert sequence) Q0E4F6 Q0E4F6_ORYSJ Os02g0121500 Os02g0121500 OsJ_05168 OSNPB_020121500 ENOG411DXXA SKIP25,KUF1 Q8GX29,A0A1P8AQU2 SKI25_ARATH,A0A1P8AQU2_ARATH F-box/kelch-repeat protein SKIP25 (SKP1-interacting partner 25),KAR-UP F-box 1 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 44149,48308 F-box/kelch-repeat protein SKIP25 (SKP1-interacting partner 25),KAR-UP F-box 1 Cul3-RING ubiquitin ligase complex [GO:0031463]; nucleus [GO:0005634]; protein ubiquitination [GO:0016567]; response to karrikin [GO:0080167] locus:2197540; AT1G31350 F-box Kelch-repeat protein F-box family protein-like (Os06g0711700 protein) Q5Z7Y6 Q5Z7Y6_ORYSJ Os06g0711700 OJ1663_H12.8 OSNPB_060711700 P0655A07.41 ENOG411DXXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GDP-D-glucose phosphorylase Os12g0612100 protein (VTC2, putative, expressed) (cDNA clone:J033052E24, full insert sequence) Q2QMA2 Q2QMA2_ORYSJ Os12g0612100 LOC_Os12g41800 Os12g0612100 OsJ_36845 OSNPB_120612100 ENOG411DXXC Q7XBQ8 Q7XBQ8_ARATH Uncharacterized protein At1g09290 (Fragment) 38497 Uncharacterized protein At1g09290 (Fragment) RNA binding [GO:0003723]; tRNA modification [GO:0006400] locus:2203033; NA Os02g0672400 protein (cDNA clone:J033069I15, full insert sequence) Q6EU12 Q6EU12_ORYSJ Os02g0672400 Os02g0672400 OJ1197_E09.5 OJ1493_H11.18 OSNPB_020672400 ENOG411DXXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain Os02g0131400 protein (Putative beta-D-glucan exohydrolase),Os11g0149250 protein Q6ZG89,A0A0P0XZC5 Q6ZG89_ORYSJ,A0A0P0XZC5_ORYSJ OJ1007_D04.19 Os02g0131400 OSNPB_020131400,Os11g0149250 OSNPB_110149250 ENOG411DXXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Male sterility protein Os06g0651000 protein,Os06g0651100 protein (Putative NADPH HC toxin reductase) (cDNA clone:001-122-B06, full insert sequence) Q0DAI4,Q67UQ2 Q0DAI4_ORYSJ,Q67UQ2_ORYSJ Os06g0651000 Os06g0651000 OSNPB_060651000,Os06g0651100 OSNPB_060651100 P0453H04.36 ENOG411DXXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) Os12g0149000 protein A0A0P0Y6Z9 A0A0P0Y6Z9_ORYSJ Os12g0149000 OSNPB_120149000 ENOG411DXXG CRT1,CRT2,CRT1a O04151,Q38858,F4I529 CALR1_ARATH,CALR2_ARATH,F4I529_ARATH Calreticulin-1,Calreticulin-2,Calreticulin 1a Sensitive to tunicamycin (inducer of the unfolded protein response)-M. Sommarin-2008,Small seedlings; Resistant to tunicamycin-S. Persson-2010 FUNCTION: Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER (By similarity). {ECO:0000250}. R-ATH-901042; 48527,48157,49143 Calreticulin-1,Calreticulin-2,Calreticulin 1a apoplast [GO:0048046]; chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; calcium ion binding [GO:0005509]; carbohydrate binding [GO:0030246]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651],apoplast [GO:0048046]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; mitochondrion [GO:0005739]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; carbohydrate binding [GO:0030246]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651],endoplasmic reticulum [GO:0005783]; calcium ion binding [GO:0005509]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2010723;,locus:2195326; AT1G56340,AT1G09210 Molecular calcium-binding chaperone promoting folding oligomeric assembly and quality control in the ER via the calreticulin calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER (By similarity) Calreticulin,Calreticulin, putative, expressed (Os03g0832200 protein) (Putative calreticulin) (cDNA clone:J023060M04, full insert sequence),Os08g0560800 protein (Fragment) Q9SLY8,Q7Y140,A0A0P0XIU6 CALR_ORYSJ,Q7Y140_ORYSJ,A0A0P0XIU6_ORYSJ Os07g0246200 LOC_Os07g14270 OJ1058_C08.34-1 OJ1058_C08.34-2 OSJNBa0003K21.18-1 OSJNBa0003K21.18-2,LOC_Os03g61670 Os03g0832200 OsJ_13241 OSJNBa0078D06.28 OSNPB_030832200,Os08g0560800 OSNPB_080560800 FUNCTION: Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER (By similarity). {ECO:0000250}. ENOG411DXXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Os08g0530100 protein (Fragment),Os08g0530066 protein Q0J478,A0A0P0XJF6 Q0J478_ORYSJ,A0A0P0XJF6_ORYSJ Os08g0530100 Os08g0530100 OSNPB_080530100,Os08g0530066 OSNPB_080530066 ENOG411DXXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aspartokinase Os01g0927900 protein (Putative aspartate kinase) (cDNA clone:J033004I10, full insert sequence) Q5JK18 Q5JK18_ORYSJ Os01g0927900 OSJNBa0052O12.2 OSJNBa0093F16.38 OSNPB_010927900 ENOG411DXXZ DSK2B,DSK2A Q9SII8,Q9SII9 DSK2B_ARATH,DSK2A_ARATH Ubiquitin domain-containing protein DSK2b,Ubiquitin domain-containing protein DSK2a FUNCTION: Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP). {ECO:0000269|PubMed:21764993}.,FUNCTION: Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP). {ECO:0000269|PubMed:20059542, ECO:0000269|PubMed:21764993}. R-ATH-8856825; 58054,57285 Ubiquitin domain-containing protein DSK2b,Ubiquitin domain-containing protein DSK2a cytosol [GO:0005829]; nucleus [GO:0005634]; polyubiquitin modification-dependent protein binding [GO:0031593] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:23336935}.,TISSUE SPECIFICITY: Ubiquitous with a strong expression level in inflorescence. {ECO:0000269|PubMed:23336935}. locus:2059682;,locus:2059677; AT2G17200,AT2G17190 K04523 ubiquilin NA NA NA NA NA NA NA ENOG411DXXP O81803 O81803_ARATH DUF241 domain protein, putative (DUF241) (Uncharacterized protein AT4g35720) (Uncharacterized protein F8D20.230) 36572 DUF241 domain protein, putative (DUF241) (Uncharacterized protein AT4g35720) (Uncharacterized protein F8D20.230) locus:2127973; AT4G35720 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411DXXQ FMT,NOXY38 F4J5S1,F4J5S0,F4J5R9 CLU_ARATH,F4J5S0_ARATH,F4J5R9_ARATH Clustered mitochondria protein (Friendly mitochondria protein),Clustered mitochondria protein homolog DISRUPTION PHENOTYPE: Causes mitochondria to cluster within cells. {ECO:0000269|PubMed:14617080}. FUNCTION: mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. {ECO:0000255|HAMAP-Rule:MF_03013, ECO:0000269|PubMed:14617080}.,FUNCTION: mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. {ECO:0000256|HAMAP-Rule:MF_03013, ECO:0000256|SAAS:SAAS00983568}. 153689,152524,155167 Clustered mitochondria protein (Friendly mitochondria protein),Clustered mitochondria protein homolog cytoplasm [GO:0005737]; intracellular distribution of mitochondria [GO:0048312],cytoplasm [GO:0005737]; RNA binding [GO:0003723]; intracellular distribution of mitochondria [GO:0048312],chloroplast [GO:0009507]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; RNA binding [GO:0003723]; intracellular distribution of mitochondria [GO:0048312]; positive regulation of mitochondrial fusion [GO:0010636] locus:2083790; AT3G52140 Involved in proper cytoplasmic distribution of mitochondria (By similarity) Clustered mitochondria protein homolog Q6ZGV8 Q6ZGV8_ORYSJ Os02g0717400 OJ1191_G08.42 OJ2056_H01.14 OSNPB_020717400 FUNCTION: mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. {ECO:0000256|HAMAP-Rule:MF_03013, ECO:0000256|SAAS:SAAS00983568}. ENOG411DXXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phenazine biosynthesis-like protein Os03g0434400 protein,Os11g0406945 protein (Fragment) A0A0P0VZ21,A0A0P0Y1L5 A0A0P0VZ21_ORYSJ,A0A0P0Y1L5_ORYSJ Os03g0434400 OSNPB_030434400,Os11g0406945 OSNPB_110406945 ENOG411DXXS NAT10,NAT9 O04472,Q3E956 NAT10_ARATH,NAT9_ARATH Putative nucleobase-ascorbate transporter 10 (AtNAT10),Putative nucleobase-ascorbate transporter 9 (AtNAT9) R-ATH-196836; 60348,45664 Putative nucleobase-ascorbate transporter 10 (AtNAT10),Putative nucleobase-ascorbate transporter 9 (AtNAT9) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] locus:2034104;,locus:2145507; AT1G65550,AT5G25420 nucleobase-ascorbate transporter NA NA NA NA NA NA NA ENOG411DXXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein Q6Z7C3 Q6Z7C3_ORYSJ Os02g0114100 Os02g0114050 OJ1399_H05.32 OsJ_05091 OSNPB_020114100 P0036E06.11 ENOG411DXXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os01g0871500 protein (Putative oligopeptide transporter),Os01g0871600 protein (Fragment) Q5N747,A0A0P0VAZ6 Q5N747_ORYSJ,A0A0P0VAZ6_ORYSJ Os01g0871500 OsJ_04242 OSNPB_010871500 P0039A07.28 P0491F11.2,Os01g0871600 OSNPB_010871600 ENOG411DXXV PSBS,NPQ4 Q9XF91,F4IEG8 PSBS_ARATH,F4IEG8_ARATH Photosystem II 22 kDa protein, chloroplastic (CP22) (Protein NONPHOTOCHEMICAL QUENCHING 4) (Protein PHOTOSYSTEM II SUBUNIT S),Chlorophyll A-B binding family protein DISRUPTION PHENOTYPE: Non-photochemical quenching phenotype. {ECO:0000269|PubMed:10667783}. The mutant is defective specifically in the qE component of NPQ. However it exhibites zeaxanthin synthesis in high light that is indistinguishable in extent and kinetics from that of the wild type.,Phenotype not described. Excess absorbed light energy cannot be dissipated; No other phenotypes mentioned-K. Niyogi-2000 FUNCTION: Plays an important role in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage. Is not necessary for efficient light harvesting and photosynthesis. {ECO:0000269|PubMed:10667783}. MetaCyc:AT1G44575-MONOMER; 28008,21981 Photosystem II 22 kDa protein, chloroplastic (CP22) (Protein NONPHOTOCHEMICAL QUENCHING 4) (Protein PHOTOSYSTEM II SUBUNIT S),Chlorophyll A-B binding family protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem II [GO:0009523]; PSII associated light-harvesting complex II [GO:0009517]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; protein domain specific binding [GO:0019904]; substrate-specific transmembrane transporter activity [GO:0022891]; xanthophyll binding [GO:0051738]; nonphotochemical quenching [GO:0010196]; photosynthesis [GO:0015979]; response to karrikin [GO:0080167]; thylakoid membrane organization [GO:0010027]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021] locus:2823639; AT1G44575 Photosystem II 22 kDa protein Os01g0869800 protein (Putative photosystem II subunit PsbS) (cDNA clone:001-002-B11, full insert sequence) (cDNA clone:001-013-D09, full insert sequence) (cDNA clone:J023118A05, full insert sequence),Os04g0690800 protein Q943K1,Q0J8R9 Q943K1_ORYSJ,Q0J8R9_ORYSJ Os01g0869800 OsJ_04227 OSNPB_010869800 P0039A07.6 P0677H08.38,Os04g0690800 Os04g0690800 OSNPB_040690800 ENOG411DXXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0857600 protein (cDNA clone:J013126K03, full insert sequence),Os04g0646050 protein,Os04g0646000 protein Q5N910,A0A0P0WFJ2,A0A0P0WFJ0 Q5N910_ORYSJ,A0A0P0WFJ2_ORYSJ,A0A0P0WFJ0_ORYSJ Os01g0857600 Os01g0857600 OSNPB_010857600 P0683F02.13,Os04g0646050 OSNPB_040646050,Os04g0646000 OSNPB_040646000 ENOG411DXX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) B7F5B4 B7F5B4_ORYSJ Os04g0116800 OSNPB_040116800 ENOG411DXX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os05g0477200 protein (Fragment) A0A0P0WNR2 A0A0P0WNR2_ORYSJ Os05g0477200 OSNPB_050477200 ENOG411DXX0 RPT5B,RPT5A O04019,Q9SEI2 PS6AB_ARATH,PS6AA_ARATH 26S proteasome regulatory subunit 6A homolog B (26S proteasome AAA-ATPase subunit RPT5b) (Proteasome 26S subunit 6A homolog B) (Regulatory particle triple-A ATPase subunit 5b) (Tat-binding protein 1 homolog B) (TBP-1 homolog B),26S proteasome regulatory subunit 6A homolog A (26S proteasome AAA-ATPase subunit RPT5a) (Proteasome 26S subunit 6A homolog A) (Regulatory particle triple-A ATPase subunit 5a) (Tat-binding protein 1 homolog A) (TBP-1 homolog A) DISRUPTION PHENOTYPE: Displays a severe male gametophyte development defects in cv. Wassilewskija but not in cv. Columbia due to the complementation by RPT5B. {ECO:0000269|PubMed:19223514}. No visible phenotype,double mutants are both male and female gametophyte lethal,Insensitive to high-glucose repression of cotyledon expansion chlorophyll accumulation true-leaf development and root elongation. The response is specific to glucose but not to osmotic changes.,Most of the male gametophyte degenerates before pollen mitosis II. Homozygous plants are dwarf.,male gametophyte degenerates before pollen mitosis II Sensitive to limited glucose-J. Sheen-2006,Null: Complete male gametophyte defective; Female gametophyte defective; Knockdown: Male gametophyte defective; Homozygotes are viable: Dwarf; Short roots; Reduced fertility-P. Guerche-2009 FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. {ECO:0000269|PubMed:17081979}.,FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. Plays a essential role in the gametophyte development. {ECO:0000269|PubMed:19223514}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 47038,47480 26S proteasome regulatory subunit 6A homolog B (26S proteasome AAA-ATPase subunit RPT5b) (Proteasome 26S subunit 6A homolog B) (Regulatory particle triple-A ATPase subunit 5b) (Tat-binding protein 1 homolog B) (TBP-1 homolog B),26S proteasome regulatory subunit 6A homolog A (26S proteasome AAA-ATPase subunit RPT5a) (Proteasome 26S subunit 6A homolog A) (Regulatory particle triple-A ATPase subunit 5a) (Tat-binding protein 1 homolog A) (TBP-1 homolog A) cytosolic proteasome complex [GO:0031597]; membrane [GO:0016020]; nuclear proteasome complex [GO:0031595]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; embryo sac development [GO:0009553]; glucose mediated signaling pathway [GO:0010255]; pollen development [GO:0009555]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; proteasomal protein catabolic process [GO:0010498]; ubiquitin-dependent ERAD pathway [GO:0030433],cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; proteasomal protein catabolic process [GO:0010498]; ubiquitin-dependent ERAD pathway [GO:0030433] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:9878390}. locus:2036099;,locus:2079742; AT1G09100,AT3G05530 26S protease regulatory subunit 6A 26S proteasome regulatory subunit 6A homolog (Tat-binding protein homolog 1) (TBP-1),OSJNBa0019J05.17 protein (Os04g0284600 protein) (cDNA clone:J023092N19, full insert sequence),Os06g0173100 protein (Putative 26S proteasome regulatory particle triple-A ATPase subunit5a),Os02g0803700 protein P46465,Q7XW77,Q5SNC0,A0A0P0VQU4 PRS6A_ORYSJ,Q7XW77_ORYSJ,Q5SNC0_ORYSJ,A0A0P0VQU4_ORYSJ TBP1 OsRPT5a Os02g0803700 LOC_Os02g56000 P0689B12.30,Os04g0284600 Os04g0284600 OsJ_14130 OSJNBa0019J05.17 OSNPB_040284600,Os06g0173100 Os06g0173100 OSJNBa0014B15.23 OSNPB_060173100,Os02g0803700 OSNPB_020803700 FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity). {ECO:0000250}. ENOG411DXX1 Q8LCT7,A0A1P8BE87,A0A1P8BE92,A0A1P8BE89,A0A1P8BEC4,B3H734,A8MS01 Q8LCT7_ARATH,A0A1P8BE87_ARATH,A0A1P8BE92_ARATH,A0A1P8BE89_ARATH,A0A1P8BEC4_ARATH,B3H734_ARATH,A8MS01_ARATH At5g01470 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 27561,30736,30323,20923,23685,30195,27974 At5g01470 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2179202; AT5G01470 Putative methyltransferase Expressed protein (Os03g0826700 protein) (cDNA clone:001-039-C03, full insert sequence) (cDNA clone:006-201-F01, full insert sequence) Q10B95 Q10B95_ORYSJ LOC_Os03g61140 Os03g0826700 OsJ_13199 OSNPB_030826700 ENOG411DXX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) A0A0P0VKK0 A0A0P0VKK0_ORYSJ Os02g0556000 OSNPB_020556000 ENOG411DXX3 Q9SFE3,A0A1P8AWD3 Q9SFE3_ARATH,A0A1P8AWD3_ARATH Histone H3 K4-specific methyltransferase SET7/9 family protein (Putative phosphatidylinositol-4-phosphate 5-kinase) (T26F17.15),Histone H3 K4-specific methyltransferase SET7/9 family protein ARA:GQT-262-MONOMER; 46516,41464 Histone H3 K4-specific methyltransferase SET7/9 family protein (Putative phosphatidylinositol-4-phosphate 5-kinase) (T26F17.15),Histone H3 K4-specific methyltransferase SET7/9 family protein integral component of membrane [GO:0016021]; kinase activity [GO:0016301]; methyltransferase activity [GO:0008168],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2201113; AT1G21920 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein phosphatidylinositol-4-phosphate 5-kinase-related 1-phosphatidylinositol-4-phosphate 5-kinase-like protein (Os09g0453900 protein) (cDNA clone:J013140B05, full insert sequence),Os09g0453900 protein (Fragment) Q67UY9,A0A0N7KQX2 Q67UY9_ORYSJ,A0A0N7KQX2_ORYSJ P0488D02.28-1 Os09g0453900 OsJ_29607 OSNPB_090453900,Os09g0453900 OSNPB_090453900 ENOG411DXX4 PUB62 Q6DBN5 PUB62_ARATH U-box domain-containing protein 62 (EC 2.3.2.27) (Plant U-box protein 62) (RING-type E3 ubiquitin transferase PUB62) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 39371 U-box domain-containing protein 62 (EC 2.3.2.27) (Plant U-box protein 62) (RING-type E3 ubiquitin transferase PUB62) ubiquitin-protein transferase activity [GO:0004842] locus:2153484; AT5G05230 U-box domain-containing protein Os03g0816000 protein A0A0P0W507 A0A0P0W507_ORYSJ Os03g0816000 OSNPB_030816000 ENOG411DXX5 NIP1,NIP2 Q8GT75,Q8GT74,A0A1P8B7V3,F4INM3 NIP1_ARATH,NIP2_ARATH,A0A1P8B7V3_ARATH,F4INM3_ARATH NEP1-interacting protein 1 (RING-H2 finger protein ATL26),NEP1-interacting protein 2 (RING-H2 finger protein ATL25),RING/U-box superfamily protein,NEP-interacting protein 2 FUNCTION: Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. {ECO:0000250}.,FUNCTION: Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. {ECO:0000269|PubMed:18567673}. 25451,25803,29069,27009 NEP1-interacting protein 1 (RING-H2 finger protein ATL26),NEP1-interacting protein 2 (RING-H2 finger protein ATL25),RING/U-box superfamily protein,NEP-interacting protein 2 chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021],chloroplast thylakoid membrane [GO:0009535]; integral component of plastid membrane [GO:0031351]; response to light stimulus [GO:0009416] locus:2125364;,locus:2827926; AT4G35840,AT2G17730 NEP1-interacting protein Os10g0544600 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:001-039-B04, full insert sequence) (cDNA clone:001-131-B11, full insert sequence) (cDNA clone:001-204-D04, full insert sequence) Q9AV43 Q9AV43_ORYSJ LOC_Os10g39770 Os10g0544600 OSJNBa0001O14.25 OSNPB_100544600 ENOG411DXX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q339R3,Q10Q54 Q339R3_ORYSJ,Q10Q54_ORYSJ LOC_Os10g19180 Os10g0337500 OsJ_31120 OSNPB_100337500,Os03g0209500 LOC_Os03g11110 Os03g0209500 OsJ_09865 OSNPB_030209500 ENOG411DXX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Alum_res Os04g0636300 protein (Fragment) C7J138 C7J138_ORYSJ Os04g0636300 Os04g0636300 OSNPB_040636300 ENOG411DZ02 DEGP14,DEG14 Q3E6S8,A0A1P8BBM9 DGP14_ARATH,A0A1P8BBM9_ARATH Putative protease Do-like 14 (EC 3.4.21.-),Trypsin family protein with PDZ domain-containing protein FUNCTION: Putative serine protease. 3.4.21.- 45947,46647 Putative protease Do-like 14 (EC 3.4.21.-),Trypsin family protein with PDZ domain-containing protein serine-type endopeptidase activity [GO:0004252] AT5G27660 protease Do-like Os11g0246600 protein A0A0N7KSP8 A0A0N7KSP8_ORYSJ Os11g0246600 OSNPB_110246600 ENOG411DZ03 Q9LUA0 Q9LUA0_ARATH AT3g25910/MPE11_6 (MAP kinase kinase kinase, putative (DUF1644)) 42445 AT3g25910/MPE11_6 (MAP kinase kinase kinase, putative (DUF1644)) kinase activity [GO:0016301] locus:2092140; AT3G25910 Protein of unknown function (DUF1644) Os01g0612600 protein Q0JLA7 Q0JLA7_ORYSJ Os01g0612600 Os01g0612600 OsJ_02586 OSNPB_010612600 ENOG411DZ00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1-aminocyclopropane-1-carboxylate oxidase homolog Os06g0255100 protein (Putative 2-oxoglutarate-dependent oxygenase) (cDNA clone:J023039E01, full insert sequence) Q656N1 Q656N1_ORYSJ Os06g0255100 OSNPB_060255100 P0592E11.16 ENOG411DZ01 SUF4 Q9C5G0,A0A1P8ASM0 SUF4_ARATH,A0A1P8ASM0_ARATH Protein SUPPRESSOR OF FRI 4,Zinc finger (C2H2 type) family protein DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. Similar delays in flowering in short days and similar acceleration of flowering by vernalization as Col.,Early flowering almost identical to Col which is a fri null and did not display any other morphological alterations.,Slight increase in delay in flowering under LD conditions compared to co-1 single mutant.,Shorter delay in flowering time under LD conditions compared to single mutant fca-9.,Flowering time similar to that of the flc-3 single mutant in both LD and SD conditions.,Increased delay in flowering time compared to both parental single mutants.,Intermediate delay in flowering time compared to both single mutants.,Delay in flowering intermediate between that observed in the two parental single mutants.,Slight increase in delay in flowering under LD conditions compared to soc1-2 single mutant.,Suppress the FRI late flowering phenotype. Reduced H3K4 trimethylation at FLC locus. Early flowering-I. Lee-2006 FUNCTION: Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. 39801,42540 Protein SUPPRESSOR OF FRI 4,Zinc finger (C2H2 type) family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; regulation of transcription, DNA-templated [GO:0006355],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269|PubMed:17138694}. TISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. locus:2015776; AT1G30970 Zinc finger protein Os09g0560900 protein (Zinc finger protein-like) (cDNA clone:J013127D16, full insert sequence) Q653D5 Q653D5_ORYSJ Os09g0560900 OSNPB_090560900 P0635G10.9 ENOG411DZ06 Q9SSK4,Q6DSU0 Q9SSK4_ARATH,Q6DSU0_ARATH F15H11.13 protein (Uncharacterized protein At1g70900),Fold protein 26698,27327 F15H11.13 protein (Uncharacterized protein At1g70900),Fold protein locus:2013935;,locus:2201215; AT1G70900,AT1G23110 NA Os08g0433200 protein,Os09g0411500 protein (Fragment) Q6ZA96,A0A0P0XME6 Q6ZA96_ORYSJ,A0A0P0XME6_ORYSJ Os08g0433200 OSNPB_080433200 P0431A03.17,Os09g0411500 OSNPB_090411500 ENOG411DZ07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0957800 protein (Fragment),Os01g0957600 protein (Fragment) A0A0P0VD68,A0A0P0VD21 A0A0P0VD68_ORYSJ,A0A0P0VD21_ORYSJ Os01g0957800 OSNPB_010957800,Os01g0957600 OSNPB_010957600 ENOG411DZ04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA QLQ Growth-regulating factor 11 (OsGRF11) (Transcription activator GRF11) Q6AWX8 GRF11_ORYSJ GRF11 Os07g0467500 LOC_Os07g28430 OsJ_24174 P0003B09.18 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411DZ05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found Expansin-B17 (Beta-expansin-17) (OsEXPB17) (OsaEXPb1.13),Expansin-B16 (Beta-expansin-16) (OsEXPB16) (OsaEXPb1.14),Os02g0639500 protein,Os04g0530100 protein (Fragment) Q7X6J9,Q0DZ85,A0A0P0VM75,A0A0P0WD42 EXB17_ORYSJ,EXB16_ORYSJ,A0A0P0VM75_ORYSJ,A0A0P0WD42_ORYSJ EXPB17 Os04g0530100 LOC_Os04g44780 OSJNBa0074L08.17 OSJNBa0081C01.5,EXPB16 Os02g0639500 LOC_Os02g42650 OSJNBa0014E22.43 P0010C01.19,Os02g0639500 OSNPB_020639500,Os04g0530100 OSNPB_040530100 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DZ08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Expressed protein (Os12g0635500 protein) Q2QLN3 Q2QLN3_ORYSJ Os12g0635500 LOC_Os12g43880 OSNPB_120635500 ENOG411DZ09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os07g0615000 protein (Fragment) A0A0N7KNV1 A0A0N7KNV1_ORYSJ Os07g0615000 OSNPB_070615000 ENOG411DZ0B ATJ13 Q39079 DNJ13_ARATH Chaperone protein dnaJ 13 (AtDjB13) (AtJ13) Long hypocotyl and partially unfolded cotyledons under far-red light-C. Bolle-2009 FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to be involved in resistance to oxidative stresses mediated by thiol-oxidizing agents such as diamide. {ECO:0000250, ECO:0000269|PubMed:7479844}. 59232 Chaperone protein dnaJ 13 (AtDjB13) (AtJ13) integral component of membrane [GO:0016021]; plastid [GO:0009536]; response to very low light intensity stimulus [GO:0055122]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:7479844}. locus:2058704; AT2G35720 chaperone protein DnaJ Chaperone protein dnaJ 13, putative, expressed (Os10g0507800 protein) (cDNA clone:J013073E12, full insert sequence),Os10g0507800 protein (Fragment) Q337D7,A0A0P0XWC8 Q337D7_ORYSJ,A0A0P0XWC8_ORYSJ Os10g0507800 LOC_Os10g36370 OSNPB_100507800,Os10g0507800 OSNPB_100507800 ENOG411DZ0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411DZ0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4-coumarate-CoA ligase activity Probable 4-coumarate--CoA ligase 5 (4CL 5) (Os4CL5) (EC 6.2.1.12) (4-coumaroyl-CoA synthase 5) Q6ZAC1 4CL5_ORYSJ 4CL5 Os08g0448000 LOC_Os08g34790 OsJ_026405 P0409A07.17 P0429B05.38 ENOG411DZ0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor GATA zinc finger family protein, expressed (GATA zinc finger protein) (Os12g0624900 protein) (cDNA clone:J033038C04, full insert sequence) Q2QLX6 Q2QLX6_ORYSJ Os12g0624900 LOC_Os12g42970 Os12g0624900 OsJ_36935 OSNPB_120624900 ENOG411DZ0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os09g0545000 protein,Os08g0487200 protein,Os12g0233500 protein,Os06g0550310 protein Q0IZW7,Q6ZCW3,A0A0P0Y8E3,A0A0P0WXK3 Q0IZW7_ORYSJ,Q6ZCW3_ORYSJ,A0A0P0Y8E3_ORYSJ,A0A0P0WXK3_ORYSJ Os09g0545000 OSNPB_090545000,Os08g0487200 OSNPB_080487200 P0028A08.14 P0481F05.35,Os12g0233500 OSNPB_120233500,Os06g0550310 OSNPB_060550310 ENOG411DZ0J T4C21_90 Q9LZZ5 Q9LZZ5_ARATH At3g60680 (DUF641 family protein (DUF641)) (Uncharacterized protein At3g60680/T4C21_90) (Uncharacterized protein T4C21_90) 56271 At3g60680 (DUF641 family protein (DUF641)) (Uncharacterized protein At3g60680/T4C21_90) (Uncharacterized protein T4C21_90) cytoskeleton [GO:0005856]; peroxisome [GO:0005777] locus:2101891; AT3G60680 Plant protein of unknown function (DUF641) Expressed protein (Os10g0508100 protein) Q8L4S9 Q8L4S9_ORYSJ OSJNBb0015K05.7 LOC_Os10g36400 Os10g0508100 OSJNBb0091N21.50 OSNPB_100508100 ENOG411DZ0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase D-mannose binding lectin family protein, expressed (Os03g0828800 protein),Os08g0230800 protein,Os01g0964400 protein,Os08g0236400 protein Q10B65,A0A0P0XDL5,A0A0P0VD82,A0A0P0XDV7 Q10B65_ORYSJ,A0A0P0XDL5_ORYSJ,A0A0P0VD82_ORYSJ,A0A0P0XDV7_ORYSJ LOC_Os03g61310 Os03g0828800 OsJ_13204 OSJNBa0010E04.17 OSNPB_030828800,Os08g0230800 OSNPB_080230800,Os01g0964400 OSNPB_010964400,Os08g0236400 OSNPB_080236400 ENOG411DZ0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0321000 protein Q0E1N8 Q0E1N8_ORYSJ Os02g0321000 Os02g0321000 OSNPB_020321000 ENOG411DZ0I DUR3 F4KD71 DUR3_ARATH Urea-proton symporter DUR3 (AtDUR3) (High-affinity urea active transporter DUR3) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but when grown with urea as a sole source of nitrogen, plants are chlorotic and accumulate increased levels of anthocyanin. {ECO:0000269|PubMed:17672841}. The mutant insertion line did not show any visible growth difference on soil or nutrient solution supplemented with nitrate or ammonium as the nitrogen source.,The mutant was grown together with wild type for 38 days on nutrient solution containing 2 mM ammonium nitrate before it was subjected to nitrogen deficiency for another 4 days. In a concentration range of 3–200 ;M urea influx into roots of the mutant plants was between 70 and 90% lower than in the wild type.,When grown on sterile agar plates supplemented with urea as a sole nitrogen source wild-type plants developed green leaves when supplied with 1 mM and even as little as 0.5 mM urea by contrast the mutant line became chlorotic and accumulated more anthocyanins than the wild type. Chlorosis and elevated anthocyanin levels with urea as sole source of nitrogen-N. von Wiren-2007 FUNCTION: High-affinity urea-proton symporter involved in the active transport of urea across the plasma membrane into root cells. May play an important role in urea uptake by plant cells at low external urea concentrations. {ECO:0000269|PubMed:12615950, ECO:0000269|PubMed:17672841}. MISCELLANEOUS: The urease inhibitor phenylphosphorodiamidate (PPD) has no effect on urea uptake and translocation or DUR3 gene expression. {ECO:0000305|PubMed:17672841}. 75913 Urea-proton symporter DUR3 (AtDUR3) (High-affinity urea active transporter DUR3) integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; symporter activity [GO:0015293]; urea transmembrane transporter activity [GO:0015204]; cellular response to nitrogen starvation [GO:0006995]; urea transmembrane transport [GO:0071918] TISSUE SPECIFICITY: Expressed in root rhizodermis, including root hairs and cortex in more basal root zones. Expressed in shoots. {ECO:0000269|PubMed:12615950, ECO:0000269|PubMed:17672841}. locus:2163528; AT5G45380 urea active transporter Urea-proton symporter DUR3 (OsDUR3) (High-affinity urea active transporter DUR3),Os02g0689066 protein Q7XBS0,A0A0P0VN59 DUR3_ORYSJ,A0A0P0VN59_ORYSJ DUR3 Os10g0580400 LOC_Os10g42960 OsJ_32609 OSJNBa0056G17.4,Os02g0689066 OSNPB_020689066 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but when grown with urea as the sole source of nitrogen, plants show reduced growth and slight yellowing of shoots. {ECO:0000269|PubMed:22010949}. FUNCTION: High-affinity urea-proton symporter involved in the active transport of urea across the plasma membrane into root cells. May play an important role in urea uptake by plant cells at low external urea concentrations. {ECO:0000269|PubMed:22010949}. ENOG411DZ0N DHNAT1 Q9SX65 DNAT1_ARATH 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 (AtDHNAT1) (DHNA-CoA thioesterase 1) (EC 3.1.2.-) DISRUPTION PHENOTYPE: Reduced DHNA-CoA thioesterase activity and phylloquinone content. {ECO:0000269|PubMed:22372525}. FUNCTION: Catalyzes the hydrolysis of the thioester bond of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) in peroxisomes, a necessary step to form the naphthoquinone ring of phylloquinone (vitamin K(1)). Is not active on benzoyl-CoA, phenylacetyl-CoA, succinyl-CoA and palmitoyl-CoA thioesters. {ECO:0000269|PubMed:22372525}. MISCELLANEOUS: May originate from a horizontal gene transfer with a bacterial species of the Lactobacillales order. {ECO:0000303|PubMed:22372525}. PATHWAY: Cofactor biosynthesis; phylloquinone biosynthesis. {ECO:0000305|PubMed:22372525}.; PATHWAY: Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 7/7. {ECO:0000305|PubMed:22372525}. 3.1.2.- 16713 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 (AtDHNAT1) (DHNA-CoA thioesterase 1) (EC 3.1.2.-) peroxisome [GO:0005777]; hydrolase activity [GO:0016787]; phylloquinone biosynthetic process [GO:0042372]; protein homotetramerization [GO:0051289] TISSUE SPECIFICITY: Mostly expressed in roots, stems, leaves and siliques. {ECO:0000269|PubMed:14701923}. locus:2007735; AT1G48320 thioesterase NA NA NA NA NA NA NA ENOG411DZ0M O22166,F4IV28 O22166_ARATH,F4IV28_ARATH Uncharacterized protein At2g44850,Uncharacterized protein 44727,35259 Uncharacterized protein At2g44850,Uncharacterized protein locus:2054992; AT2G44850 Uncharacterised protein family UPF0565 Os02g0655100 protein (Fragment) Q0DZ09 Q0DZ09_ORYSJ Os02g0655100 Os02g0655100 OSNPB_020655100 ENOG411DZ0R 4CLL6 Q84P24 4CLL6_ARATH 4-coumarate--CoA ligase-like 6 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 7) (At4CL7) ARA:AT4G19010-MONOMER; 6.2.1.- 61957 4-coumarate--CoA ligase-like 6 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 7) (At4CL7) peroxisome [GO:0005777]; ATP binding [GO:0005524]; CoA-ligase activity [GO:0016405]; ubiquinone biosynthetic process [GO:0006744] locus:2117209; AT4G19010 4-coumarate--CoA ligase-like 4-coumarate--CoA ligase-like 2 (EC 6.2.1.-),4-coumarate--CoA ligase-like 3 (EC 6.2.1.-),Os10g0578950 protein Q336M7,Q6YYZ2,A0A0P0XXS5 4CLL2_ORYSJ,4CLL3_ORYSJ,A0A0P0XXS5_ORYSJ 4CLL2 Os10g0578950 LOC_Os10g42800 OsJ_031306 OSJNBa0056G17.30,4CLL3 Os08g0143300 LOC_Os08g04770 P0025F03.16 P0473D02.38,Os10g0578950 OSNPB_100578950 ENOG411DZ0S ERD4 Q9C8G5 CSCLD_ARATH CSC1-like protein ERD4 (Protein EARLY-RESPONSIVE TO DEHYDRATION STRESS 4) FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. 81935 CSC1-like protein ERD4 (Protein EARLY-RESPONSIVE TO DEHYDRATION STRESS 4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ion transport [GO:0006811] locus:2204227; AT1G30360 early-responsive to dehydration 4 Os07g0150100 protein (Putative ERD4 protein) Q6ZLQ0 Q6ZLQ0_ORYSJ Os07g0150100 OJ1027_G06.20 OSNPB_070150100 ENOG411DZ0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldose 1-epimerase Glucose-6-phosphate 1-epimerase (EC 5.1.3.15) B9F3C8 B9F3C8_ORYSJ Os02g0176900 OsJ_05594 OSNPB_020176900 ENOG411DZ0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (Os11g0265900 protein) (cDNA clone:J013000K14, full insert sequence),Os11g0266500 protein Q53LS4,A0A0P0Y1V9 Q53LS4_ORYSJ,A0A0P0Y1V9_ORYSJ Os11g0265900 LOC_Os11g16470 Os11g0265900 OSNPB_110265900,Os11g0266500 OSNPB_110266500 ENOG411DZ0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0731700 protein (Fragment) A0A0P0X1M5 A0A0P0X1M5_ORYSJ Os06g0731700 OSNPB_060731700 ENOG411DZ0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fructose-bisphosphate aldolase class-II NA NA NA NA NA NA NA ENOG411DZ0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_10 Os01g0134800 protein (Fragment) Q0JQW8 Q0JQW8_ORYSJ Os01g0134800 Os01g0134800 OSNPB_010134800 ENOG411DQPA PUB2 Q5XEZ8 PUB2_ARATH U-box domain-containing protein 2 (EC 2.3.2.27) (Plant U-box protein 2) (RING-type E3 ubiquitin transferase PUB2) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 78120 U-box domain-containing protein 2 (EC 2.3.2.27) (Plant U-box protein 2) (RING-type E3 ubiquitin transferase PUB2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842] locus:2158252; AT5G67340 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411DQPK MTR4 Q9XIF2 MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9 (EC 3.6.4.13) (Protein MTR4 homolog) (AtMTR4) DISRUPTION PHENOTYPE: Slower embryogenesis and several developmental defects including aberrant vein patterning, pointed first and second leaves, smaller rosettes and shorter roots. {ECO:0000269|PubMed:21682783}. FUNCTION: ATP-dependent RNA helicase that associates with the RNA exosome complex (PubMed:21682783, PubMed:25144737). Required for proper rRNA biogenesis and development. Involved in the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and also in the removal of rRNA maturation by-products (PubMed:21682783). {ECO:0000269|PubMed:21682783, ECO:0000269|PubMed:25144737}. R-ATH-6791226; 3.6.4.13 111887 DExH-box ATP-dependent RNA helicase DExH9 (EC 3.6.4.13) (Protein MTR4 homolog) (AtMTR4) nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; rRNA binding [GO:0019843]; maturation of 5.8S rRNA [GO:0000460]; RNA catabolic process [GO:0006401]; rRNA 3'-end processing [GO:0031125]; rRNA processing [GO:0006364] TISSUE SPECIFICITY: Ubiquitous but preferentially expressed in active tissues. {ECO:0000269|PubMed:21682783}. locus:2026001; AT1G59760 Superkiller viralicidic activity 2-like Os12g0279000 protein (Superkiller viralicidic activity 2-like 2, putative, expressed) Q2QTY0 Q2QTY0_ORYSJ Os12g0279000 LOC_Os12g18140 OSNPB_120279000 ENOG411DQPQ T20O10_40 Q9LYC7,Q8W457 Q9LYC7_ARATH,Q8W457_ARATH Cysteine proteinases superfamily protein (OTU-containing deubiquitinating enzyme 5 isoform i) (Uncharacterized protein T20O10_40),Cysteine proteinases superfamily protein (OTU-containing deubiquitinating enzyme OTU5 isoform ii) (Uncharacterized protein At3g62940) (Uncharacterized protein At3g62940; T20O10_40) 37362,35672 Cysteine proteinases superfamily protein (OTU-containing deubiquitinating enzyme 5 isoform i) (Uncharacterized protein T20O10_40),Cysteine proteinases superfamily protein (OTU-containing deubiquitinating enzyme OTU5 isoform ii) (Uncharacterized protein At3g62940) (Uncharacterized protein At3g62940; T20O10_40) cytosol [GO:0005829] locus:2099172; AT3G62940 OTU domain-containing protein OSJNBa0058K23.12 protein (Os04g0619500 protein) (cDNA clone:J013052H21, full insert sequence) Q7XTU0 Q7XTU0_ORYSJ Os04g0619500 Os04g0619500 OsJ_16192 OSJNBa0058K23.12 OSNPB_040619500 ENOG411DQPZ Q8VZQ8 Q8VZQ8_ARATH Putative kinesin light chain (Tetratricopeptide repeat (TPR)-like superfamily protein) 68744 Putative kinesin light chain (Tetratricopeptide repeat (TPR)-like superfamily protein) locus:2042506; AT2G31240 TPR Kinesin light chain-like (Os02g0820300 protein) (cDNA clone:J013118H02, full insert sequence) Q6K715 Q6K715_ORYSJ Os02g0820300 Os02g0820300 OJ1202_E07.31 OsJ_08901 OSNPB_020820300 P0474F11.12 ENOG411EKHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family NA NA NA NA NA NA NA ENOG411DSF8 CCA1 P92973 CCA1_ARATH Protein CCA1 (MYB-related transcription factor CCA1) (Protein CIRCADIAN CLOCK ASSOCIATED 1) DISRUPTION PHENOTYPE: Altered phytochrome regulation and shorter circadian oscillations. {ECO:0000269|PubMed:10097183, ECO:0000269|PubMed:19218364}. In mutant plants transferred to constant light after entrainment in light:dark conditions (12 h of light:12 h of darkness) the period of Lhcb1*1 circadian oscillations was ~3 h shorter than that in wild-type plants grown under the same conditions. On the first day of the experiment the timing of the increase of Lhcb1*1 RNA in cca1-1 plants was almost identical to that in wild-type plants. However by the fourth day of the experiment the Lhcb1*1 RNA peaked much earlier in cca1-1 than in wild-type plants.,Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. Short circadian rhythms in leaf movements-E. Tobin-1999 FUNCTION: Transcription factor involved in the circadian clock and in the phytochrome regulation. Binds to the promoter regions of APRR1/TOC1 and TCP21/CHE to repress their transcription. Binds to the promoter regions of CAB2A and CAB2B to promote their transcription. Represses both LHY and itself. {ECO:0000269|PubMed:11486091, ECO:0000269|PubMed:12007421, ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19339503, ECO:0000269|PubMed:9657153}. MISCELLANEOUS: CCA1 and LHY are only partially redundant, but they bind to the same region of the promoters. 66976 Protein CCA1 (MYB-related transcription factor CCA1) (Protein CIRCADIAN CLOCK ASSOCIATED 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; long-day photoperiodism, flowering [GO:0048574]; negative regulation of circadian rhythm [GO:0042754]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of gene expression [GO:0010468]; regulation of protein homodimerization activity [GO:0043496]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to organonitrogen compound [GO:0010243]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364}. locus:2044345; AT2G46830 Inherit from KOG: Transcription factor NA NA NA NA NA NA NA ENOG411DSF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Os06g0567900 protein (Putative L-ascorbate oxidase) Q5Z5T3 Q5Z5T3_ORYSJ Os06g0567900 OSJNBa0062E01.2 OSNPB_060567900 P0567G03.40 ENOG411EJES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: transcription factor Os05g0564700 protein A0A0P0WR52 A0A0P0WR52_ORYSJ Os05g0564700 OSNPB_050564700 ENOG411EJEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative gypsy type transposon NA NA NA NA NA NA NA ENOG411EJEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: transposon protein NA NA NA NA NA NA NA ENOG411EJE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0206600 protein (cDNA, clone: J065041P19, full insert sequence) Q5QNM4 Q5QNM4_ORYSJ Os01g0206600 OsJ_00814 OSJNBa0016I09.4 OSNPB_010206600 P0451C06.35 ENOG411EJE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Solute carrier family 35 NA NA NA NA NA NA NA ENOG411EJE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJE6 AGP13 Q9STQ3 AGP13_ARATH Arabinogalactan peptide 13 (AG-peptide 13) FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. {ECO:0000305}. 6052 Arabinogalactan peptide 13 (AG-peptide 13) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2136814; AT4G26320 NA NA NA NA NA NA NA NA ENOG411EJE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411EJB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MED7 protein NA NA NA NA NA NA NA ENOG411DY5B Q84MD7 Q84MD7_ARATH At1g72880 (Survival protein SurE-like phosphatase/nucleotidase) (Uncharacterized protein At1g72880) 40674 At1g72880 (Survival protein SurE-like phosphatase/nucleotidase) (Uncharacterized protein At1g72880) nucleotidase activity [GO:0008252] locus:2032652; AT1G72880 5'-nucleotidase SurE-like Os01g0709400 protein (cDNA clone:J023046I03, full insert sequence) Q0JJY1 Q0JJY1_ORYSJ Os01g0709400 Os01g0709400 OSNPB_010709400 ENOG411DY5C FBX7 Q9ZPS0 FBX7_ARATH F-box only protein 7 46819 F-box only protein 7 AT2G03560 Protein of unknown function (DUF295) Os11g0423200 protein,Os02g0801700 protein,Os11g0576400 protein,Os11g0574725 protein,Os11g0576900 protein Q0IT33,C7IYE5,A0A0P0Y4D6,A0A0P0Y3K3,A0A0N7KT42 Q0IT33_ORYSJ,C7IYE5_ORYSJ,A0A0P0Y4D6_ORYSJ,A0A0P0Y3K3_ORYSJ,A0A0N7KT42_ORYSJ Os11g0423200 Os11g0423200 OSNPB_110423200,Os02g0801700 Os02g0801700 OSNPB_020801700,Os11g0576400 OSNPB_110576400,Os11g0574725 OSNPB_110574725,Os11g0576900 OSNPB_110576900 ENOG411DY5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glycosyltransferase Glycosyltransferase (EC 2.4.1.-),Os07g0489950 protein (Fragment) Q0D6E5,Q7XHR3,Q6YZQ6,Q7XHS6,A0A0P0X446,A0A0P0X5R5 Q0D6E5_ORYSJ,Q7XHR3_ORYSJ,Q6YZQ6_ORYSJ,Q7XHS6_ORYSJ,A0A0P0X446_ORYSJ,A0A0P0X5R5_ORYSJ Os07g0486700 Os07g0486700 OSNPB_070486700,Os07g0490100 Os07g0490100 OSNPB_070490100 P0477A12.31,Os07g0489200 OsJ_24285 OSJNBa0064M11.39 OSNPB_070489200,Os07g0489300 Os07g0489300 OSJNBa0064M11.42 OSNPB_070489300 P0477A12.3,Os07g0250100 OSNPB_070250100,Os07g0489950 OSNPB_070489950 ENOG411DY5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EC9E Q3EDD3 Q3EDD3_ARATH Uncharacterized protein 45002 Uncharacterized protein locus:2009962; AT1G13550 Protein of unknown function (DUF1262) NA NA NA NA NA NA NA ENOG411DY5Y THO6 Q8L4M1 THOC6_ARATH THO complex subunit 6 (AtTHO6) (Protein DWD HYPERSENSITIVE TO ABA 1) (WD repeat-containing protein DWA1) DISRUPTION PHENOTYPE: Increased sensitivity to abscisic acid (ABA) and salt. {ECO:0000269|PubMed:20525848}. Sensitive to ABA and salt-X. Deng-2010 FUNCTION: Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. {ECO:0000250}.; FUNCTION: Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling. May function as the substrate recognition module within this complex leading to ABI5 degradation. Functionally redundant with DWA2. {ECO:0000269|PubMed:20525848}. PATHWAY: Protein modification; protein ubiquitination. 40073 THO complex subunit 6 (AtTHO6) (Protein DWD HYPERSENSITIVE TO ABA 1) (WD repeat-containing protein DWA1) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; THO complex [GO:0000347]; RNA binding [GO:0003723]; abscisic acid-activated signaling pathway [GO:0009738]; gene silencing by RNA [GO:0031047]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; production of ta-siRNAs involved in RNA interference [GO:0010267]; protein ubiquitination [GO:0016567]; RNA splicing [GO:0008380] locus:2047635; AT2G19430 WD domain G-beta repeat Os09g0363600 protein (WD-40 repeat protein-like) (cDNA clone:J013119F12, full insert sequence) Q6K4E0 Q6K4E0_ORYSJ Os09g0363600 OJ1001_G09.9 OJ1506_A04.23 OSNPB_090363600 ENOG411EKNI MJJ3.20 Q9FFJ9 Q9FFJ9_ARATH At5g05790 (Duplicated homeodomain-like superfamily protein) (MYB transcription factor) (Similarity to I-box binding factor) 31376 At5g05790 (Duplicated homeodomain-like superfamily protein) (MYB transcription factor) (Similarity to I-box binding factor) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2166459; AT5G05790 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EF49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: U2 snRNP-associated SURP domain containing NA NA NA NA NA NA NA ENOG411EF41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Armadillo/beta-catenin-like repeat NA NA NA NA NA NA NA ENOG411EF42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EF4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF938) NA NA NA NA NA NA NA ENOG411EF4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EF4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY NA NA NA NA NA NA NA ENOG411EF4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger Os03g0581100 protein (Transposase, putative, expressed) Q10HP5 Q10HP5_ORYSJ Os03g0581100 LOC_Os03g38440 OSNPB_030581100 ENOG411EF4J MZA15.19 Q9FIP8 Q9FIP8_ARATH AT5g46770/MZA15_19 14703 AT5g46770/MZA15_19 locus:2178565; AT5G46770 NA NA NA NA NA NA NA NA ENOG411EF4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Transcription factor NA NA NA NA NA NA NA ENOG411EF4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0781600 protein) (cDNA clone:002-118-E08, full insert sequence) Q10CI6 Q10CI6_ORYSJ Os03g0781600 LOC_Os03g56890 Os03g0781600 OSNPB_030781600 ENOG411EF4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EF4A Q6NLB7 Q6NLB7_ARATH At5g65925 (Uncharacterized protein At5g65925) 16779 At5g65925 (Uncharacterized protein At5g65925) locus:504954998; AT5G65925 NA NA NA NA NA NA NA NA ENOG411EF4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EF4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integrase core domain NA NA NA NA NA NA NA ENOG411EF4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1824) NA NA NA NA NA NA NA ENOG411EF4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: FBD-associated F-box protein Os04g0440200 protein A0A0P0WAK5 A0A0P0WAK5_ORYSJ Os04g0440200 OSNPB_040440200 ENOG411EF4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411EF4P SAUR10 Q9SL45 Q9SL45_ARATH Putative auxin-regulated protein (SAUR-like auxin-responsive protein family) 12942 Putative auxin-regulated protein (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2060928; AT2G18010 auxin-responsive NA NA NA NA NA NA NA ENOG411EI3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3P CEP7 P0DN96 PCEP7_ARATH Precursor of CEP7 (PCEP7) [Cleaved into: C-terminally encoded peptide 7 (CEP7)] FUNCTION: Extracellular signaling peptide that may regulate primary root growth rate and systemic nitrogen (N)-demand signaling (By similarity). Mediates up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). {ECO:0000250|UniProtKB:Q8L8Y3, ECO:0000269|PubMed:25324386}. 8125 Precursor of CEP7 (PCEP7) [Cleaved into: C-terminally encoded peptide 7 (CEP7)] apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; nitrate import [GO:1902025]; regulation of root development [GO:2000280]; root development [GO:0048364] AT5G66818 NA NA NA NA NA NA NA NA ENOG411EI3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EI3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: anthranilate synthase component NA NA NA NA NA NA NA ENOG411EI3U A_TM018A10.5 O23088 O23088_ARATH AT4g00890 protein (A_TM018A10.5 protein) (Proline-rich family protein) 47066 AT4g00890 protein (A_TM018A10.5 protein) (Proline-rich family protein) endo-1,4-beta-xylanase activity [GO:0031176] locus:2134613; AT4G00890 NA NA NA NA NA NA NA NA ENOG411EI3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EI3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EI3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0166550 protein A0A0P0XS23 A0A0P0XS23_ORYSJ Os10g0166550 OSNPB_100166550 ENOG411EI3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0224000 protein Q67UI4 Q67UI4_ORYSJ P0638H11.25 Os06g0224000 OSNPB_060224000 ENOG411EI3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI3I AGP12,AGP21 Q9LJD9,Q9C8A4 AGP12_ARATH,AGP21_ARATH Arabinogalactan peptide 12 (AG-peptide 12),Arabinogalactan peptide 21 (AG-peptide 21) FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. {ECO:0000305}. 6089,5945 Arabinogalactan peptide 12 (AG-peptide 12),Arabinogalactan peptide 21 (AG-peptide 21) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2092880;,locus:2035706; AT3G13520,AT1G55330 arabinogalactan protein 12 NA NA NA NA NA NA NA ENOG411EI3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) NA NA NA NA NA NA NA ENOG411EI34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Polyadenylate-binding protein NA NA NA NA NA NA NA ENOG411DYGD HIPP07,MFB16.14 Q9C5D3,Q9LUE7,F4KAE6,F4KAE7,B3H4U8 HIP7_ARATH,Q9LUE7_ARATH,F4KAE6_ARATH,F4KAE7_ARATH,B3H4U8_ARATH Heavy metal-associated isoprenylated plant protein 7 (AtHIP07) (Farnesylated protein 3) (AtFP3),At5g50740 (Heavy metal transport/detoxification superfamily protein) (Similarity to ATFP3),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. Binds zinc, copper and nickel in a reversible manner. {ECO:0000269|PubMed:10561075}. 39279,19011,32081,19829,32899 Heavy metal-associated isoprenylated plant protein 7 (AtHIP07) (Farnesylated protein 3) (AtFP3),At5g50740 (Heavy metal transport/detoxification superfamily protein) (Similarity to ATFP3),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001],cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2167366;,locus:2163300; AT5G63530,AT5G50740 heavy metal-associated domain containing protein expressed OSJNBa0053B21.14 protein (Os04g0390100 protein) (cDNA, clone: J100061I19, full insert sequence),Os02g0510600 protein (Putative farnesylated protein),Os02g0510600 protein Q7XKQ7,Q6K793,A0A0P0VJF6 Q7XKQ7_ORYSJ,Q6K793_ORYSJ,A0A0P0VJF6_ORYSJ Os04g0390100 OSJNBa0053B21.14 OSNPB_040390100,Os02g0510600 OSJNBa0001A11.6-1 OSNPB_020510600,Os02g0510600 OSNPB_020510600 ENOG411EJB7 Q8L7H2,O49402 Q8L7H2_ARATH,O49402_ARATH Uncharacterized protein At4g19630 (Winged-helix DNA-binding transcription factor family protein),E2F/DP family winged-helix DNA-binding domain-containing protein (Heat shock transcription factor-like protein) (Uncharacterized protein At4g18870) 15223,34620 Uncharacterized protein At4g19630 (Winged-helix DNA-binding transcription factor family protein),E2F/DP family winged-helix DNA-binding domain-containing protein (Heat shock transcription factor-like protein) (Uncharacterized protein At4g18870) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2123005;,locus:2117124; AT4G19630,AT4G18870 HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411E1DU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transporting ATPase C-terminus NA NA NA NA NA NA NA ENOG411E8JI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8JK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8JJ RTFL18,RTFL21,RTFL19 Q6X5V0,Q6X5U0,Q6X5U1 Q6X5V0_ARATH,Q6X5U0_ARATH,Q6X5U1_ARATH DVL1 (ROTUNDIFOLIA like 18),DVL3 (ROTUNDIFOLIA like 21),DVL2 (ROTUNDIFOLIA like 19) 6211,4738,5473 DVL1 (ROTUNDIFOLIA like 18),DVL3 (ROTUNDIFOLIA like 21),DVL2 (ROTUNDIFOLIA like 19) shoot system development [GO:0048367]; socket cell differentiation [GO:0090437],shoot system development [GO:0048367] locus:4010713959;,locus:4010713584;,locus:4010713725; AT5G16023,AT1G67265,AT3G02493 DVL family NA NA NA NA NA NA NA ENOG411E8JM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411E8JN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Avr9 Cf-9 rapidly elicited protein 65 NA NA NA NA NA NA NA ENOG411E8JB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8JE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA photosystem I NA NA NA NA NA NA NA ENOG411E8JU psbT P61839 PSBT_ARATH Photosystem II reaction center protein T (PSII-T) FUNCTION: Seems to play a role in the dimerization of PSII. {ECO:0000255|HAMAP-Rule:MF_00808}. 3822 Photosystem II reaction center protein T (PSII-T) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; photosynthesis [GO:0015979] locus:504954692; ATCG00690 Seems to play a role in the dimerization of PSII (By similarity) Photosystem II reaction center protein T (PSII-T) P69674 PSBT_ORYSJ psbT ycf8 LOC_Osp1g00610 FUNCTION: Seems to play a role in the dimerization of PSII. {ECO:0000250}. ENOG411E8JT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1855 NA NA NA NA NA NA NA ENOG411E8JV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein Q8HCN8 Q8HCN8_ORYSJ orf176 ENOG411E8J9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8J8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411EJ8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC41 AMC8,AMC7 Q9SA41,Q6XPT5 MCA8_ARATH,MCA7_ARATH Metacaspase-8 (AtMC8) (EC 3.4.22.-) (Metacaspase 2e) (AtMCP2e),Metacaspase-7 (AtMC7) (EC 3.4.22.-) (Metacaspase 2a) (AtMCP2a) (Metacaspase-4) FUNCTION: Cysteine protease that cleaves specifically after arginine residues. Does not cleave caspase-specific substrates. May be involved in the modulation of programmed cell death activated by oxidative stress. {ECO:0000269|PubMed:17998208}. 3.4.22.- 42521,45186 Metacaspase-8 (AtMC8) (EC 3.4.22.-) (Metacaspase 2e) (AtMCP2e),Metacaspase-7 (AtMC7) (EC 3.4.22.-) (Metacaspase 2a) (AtMCP2a) (Metacaspase-4) cysteine-type endopeptidase activity [GO:0004197]; hydrogen peroxide-mediated programmed cell death [GO:0010421]; programmed cell death [GO:0012501]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to UV-C [GO:0010225],cysteine-type peptidase activity [GO:0008234] TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:21395887}. locus:2032905;,locus:2207450; AT1G16420,AT1G79310 Caspase domain NA NA NA NA NA NA NA ENOG411EJ8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3P8 O82209,Q9STR3 O82209_ARATH,Q9STR3_ARATH Copia-like retroelement pol polyprotein (Mitochondrial ATP synthase subunit G protein),Copia-like retroelement pol polyprotein (Mitochondrial ATP synthase subunit G protein) (Uncharacterized protein AT4g26210) (Uncharacterized protein T25K17.20) 13847,13869 Copia-like retroelement pol polyprotein (Mitochondrial ATP synthase subunit G protein),Copia-like retroelement pol polyprotein (Mitochondrial ATP synthase subunit G protein) (Uncharacterized protein AT4g26210) (Uncharacterized protein T25K17.20) mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [GO:0000276]; mitochondrion [GO:0005739]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled cation transmembrane transport [GO:0099132]; ATP synthesis coupled proton transport [GO:0015986],mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [GO:0000276]; plastid [GO:0009536]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled cation transmembrane transport [GO:0099132]; ATP synthesis coupled proton transport [GO:0015986] locus:2051960;,locus:2136789; AT2G19680,AT4G26210 mitochondrial ATP synthase g subunit family protein Os01g0600000 protein (cDNA clone:J023089H03, full insert sequence) Q0JLH6 Q0JLH6_ORYSJ Os01g0600000 Os01g0600000 OsJ_02485 OSNPB_010600000 ENOG411E3P9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) OSJNBa0064M23.12 protein (Os04g0580800 protein) (cDNA clone:J013092H10, full insert sequence) Q7XUN1 Q7XUN1_ORYSJ Os04g0580800 OsJ_15894 OSJNBa0064M23.12 OSNPB_040580800 ENOG411E3P4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed (Os03g0194500 protein) (cDNA, clone: J075166C21, full insert sequence) Q10QJ0 Q10QJ0_ORYSJ Os03g0194500 LOC_Os03g09870 OsJ_09758 OSNPB_030194500 ENOG411E3P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E3P6 Q8LBY9 Q8LBY9_ARATH At5g05960 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) 12443 At5g05960 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) locus:2153619; AT5G05960 Protease inhibitor/seed storage/LTP family Os01g0849000 protein (Fragment) A0A0P0VAH1 A0A0P0VAH1_ORYSJ Os01g0849000 OSNPB_010849000 ENOG411E3P7 RPL34B,RPL34A,RPL34C Q9FE65,Q42351,Q9LJW6,A8MR50 RL342_ARATH,RL341_ARATH,RL343_ARATH,A8MR50_ARATH 60S ribosomal protein L34-2,60S ribosomal protein L34-1,60S ribosomal protein L34-3,Ribosomal protein L34e superfamily protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 13650,13705,10973 60S ribosomal protein L34-2,60S ribosomal protein L34-1,60S ribosomal protein L34-3,Ribosomal protein L34e superfamily protein cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome biogenesis [GO:0042254]; translation [GO:0006412],chloroplast [GO:0009507]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; ribosome biogenesis [GO:0042254]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2026724;,locus:2202770;,locus:2090759; AT1G69620,AT1G26880,AT3G28900 60S ribosomal protein L34 Os08g0156800 protein (Putative ribosomal protein L34) (cDNA clone:J033128K17, full insert sequence),Os08g0436800 protein (Putative ribosomal protein),Os09g0413500 protein (Fragment) Q6ZD96,Q6Z537,A0A0P0XLP8 Q6ZD96_ORYSJ,Q6Z537_ORYSJ,A0A0P0XLP8_ORYSJ Os08g0156800 OsJ_26091 OSNPB_080156800 P0438H08.20,Os08g0436800 Os08g0436800 OsJ_27452 OSJNBa0016C11.12 OSNPB_080436800,Os09g0413500 OSNPB_090413500 ENOG411E3P0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E3P1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ripening-related protein Putative ripening-related protein 6 Q7XD66 RIP6_ORYSJ Os10g0489301 Os10g0489300 LOC_Os10g34760 B1288B10.4 OSJNBb0049A16.9 ENOG411E3P2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: zinc knuckle family protein NA NA NA NA NA NA NA ENOG411E3P3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0586600 protein,Os02g0604500 protein B9F0S5,Q6K8S6 B9F0S5_ORYSJ,Q6K8S6_ORYSJ Os02g0586600 OsJ_07306 OSNPB_020586600,Os02g0604500 OJ1058_F07.3 OsJ_07435 OSNPB_020604500 ENOG411E3PM Q9C8S6,A8MRD0 Y1322_ARATH,A8MRD0_ARATH C2 domain-containing protein At1g63220,Calcium-dependent lipid-binding (CaLB domain) family protein 16266,14600 C2 domain-containing protein At1g63220,Calcium-dependent lipid-binding (CaLB domain) family protein locus:2038461; AT1G63220 C2 domain-containing protein Elicitor-responsive protein 3 (OsERG3) (16 kDa phloem protein) (RPP16),Os02g0640000 protein (Putative elicitor-responsive gene-3) (cDNA clone:J023022G19, full insert sequence) Q0JBH9,Q6H7E3 ERG3_ORYSJ,Q6H7E3_ORYSJ ERG3 Os04g0531100 LOC_Os04g44870 OsJ_014914 OSJNBa0081C01.13,Os02g0640000 Os02g0640000 OSNPB_020640000 P0010C01.27 FUNCTION: May play a role in plant defense signaling (Probable). Does not bind to phospholipids in a Ca(2+)-dependent manner in vitro (PubMed:21756975). {ECO:0000269|PubMed:21756975, ECO:0000305|PubMed:21756975}. ENOG411E3PN Q1H5D2 Q1H5D2_ARATH At4g16444 (Tail-anchored protein insertion receptor WRB-like protein) (Uncharacterized protein At4g16444) 20206 At4g16444 (Tail-anchored protein insertion receptor WRB-like protein) (Uncharacterized protein At4g16444) cytosolic small ribosomal subunit [GO:0022627]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein self-association [GO:0043621]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; root hair elongation [GO:0048767]; tail-anchored membrane protein insertion into ER membrane [GO:0071816] locus:505006480; AT4G16444 CHD5-like protein Os06g0198700 protein (cDNA clone:006-302-E08, full insert sequence) Q69K62 Q69K62_ORYSJ Os06g0198700 Os06g0198700 B1172G12.18 OsJ_20459 OSNPB_060198700 ENOG411E3PH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411E3PI BAG1 Q9LIB3 BAG8_ARATH BAG family molecular chaperone regulator 8, chloroplastic (Bcl-2-associated athanogene 8) FUNCTION: Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses. {ECO:0000250}. 61496 BAG family molecular chaperone regulator 8, chloroplastic (Bcl-2-associated athanogene 8) chloroplast [GO:0009507]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calmodulin binding [GO:0005516]; chaperone binding [GO:0051087]; protein folding [GO:0006457]; response to external biotic stimulus [GO:0043207]; response to temperature stimulus [GO:0009266] locus:2093782; AT3G29310 NA Os05g0512400 protein (cDNA clone:J023008H10, full insert sequence) Q6L529 Q6L529_ORYSJ Os05g0512400 B1155G07.6 OJ1005_B11.16 OSNPB_050512400 ENOG411E3PJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os10g0371100 protein A0A0P0XUB4 A0A0P0XUB4_ORYSJ Os10g0371100 OSNPB_100371100 ENOG411E3PK ORRM2 Q9FIU6 ORRM2_ARATH Organelle RRM domain-containing protein 2, mitochondrial FUNCTION: Involved in C-to-U editing of mitochondrial RNA. Functions as minor mitochondrial editing factor. Controls 6 percent of the mitochondrial editing sites. {ECO:0000269|PubMed:25800738}. 17090 Organelle RRM domain-containing protein 2, mitochondrial mitochondrion [GO:0005739]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2172144; AT5G54580 RNA recognition Os08g0139000 protein (Putative RNA recognition motif (RRM)-containing protein) (cDNA clone:002-176-D03, full insert sequence),Os08g0139000 protein (cDNA clone:J023056N10, full insert sequence) Q6ZKI2,B7EIA1 Q6ZKI2_ORYSJ,B7EIA1_ORYSJ OJ1119_D01.17-1 Os08g0139000 OsJ_25986 OSNPB_080139000,Os08g0139000 OSNPB_080139000 ENOG411E3PD YUP8H12R.23 Q84JL6,Q9SA48 Q84JL6_ARATH,Q9SA48_ARATH Filamentous hemagglutinin transporter (Uncharacterized protein At1g79160),>F3O9.30 (At1g16500) (Expressed protein) (Filamentous hemagglutinin transporter) 26050,28026 Filamentous hemagglutinin transporter (Uncharacterized protein At1g79160),>F3O9.30 (At1g16500) (Expressed protein) (Filamentous hemagglutinin transporter) locus:2207305;,locus:2032900; AT1G79160,AT1G16500 expressed protein Os04g0617700 protein (Fragment) C7J1W1 C7J1W1_ORYSJ Os04g0617700 Os04g0617700 OSNPB_040617700 ENOG411E3PE Q9LPM6,Q9LPM7,F4I4X9 Q9LPM6_ARATH,Q9LPM7_ARATH,F4I4X9_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (F2J10.7 protein),CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (F2J10.6 protein),CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein 17459,18007,24232 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (F2J10.7 protein),CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (F2J10.6 protein),CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein locus:2031055;,locus:2031060; AT1G50060,AT1G50050 Pathogenesis-related protein NA NA NA NA NA NA NA ENOG411E3PF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein Os01g0710100 protein A0A0P0V7C5 A0A0P0V7C5_ORYSJ Os01g0710100 OSNPB_010710100 ENOG411E3PG Q8GWE3,F4HXX2 Q8GWE3_ARATH,F4HXX2_ARATH At1g14990 (Transmembrane protein) (Uncharacterized protein At1g14990/T15D22_3),Transmembrane protein 13763,14962 At1g14990 (Transmembrane protein) (Uncharacterized protein At1g14990/T15D22_3),Transmembrane protein integral component of membrane [GO:0016021] locus:2196194; AT1G14990 NA Os01g0606050 protein Q8LR08 Q8LR08_ORYSJ Os01g0606050 OsJ_02539 OSNPB_010606050 P0704D04.7 ENOG411E3PA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ domain containing protein Os02g0539500 protein (cDNA, clone: J100071K17, full insert sequence),Os03g0267400 protein (Fragment) Q6ER79,A0A0P0VW38 Q6ER79_ORYSJ,A0A0P0VW38_ORYSJ Os02g0539500 OSJNBa0014M17.27 OSNPB_020539500,Os03g0267400 OSNPB_030267400 ENOG411E3PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os03g0664600 protein A0A0N7KHS4 A0A0N7KHS4_ORYSJ Os03g0664600 OSNPB_030664600 ENOG411E3PC A0A1I9LLX0,Q8L641 A0A1I9LLX0_ARATH,Q8L641_ARATH DNA binding protein,DNA binding protein (Uncharacterized protein At3g52170) 51111,54029 DNA binding protein,DNA binding protein (Uncharacterized protein At3g52170) DNA binding [GO:0003677] locus:2083835; AT3G52170 NA Expressed protein (Os12g0528000 protein) Q0IMY5 Q0IMY5_ORYSJ Os12g0528000 LOC_Os12g34350 Os12g0528000 OSNPB_120528000 ENOG411E3PX COX5B-1,COX5B-2 Q9LW15,Q9SSS5,Q9SSB8,A8MRD7 CX5B1_ARATH,CX5BL_ARATH,CX5B2_ARATH,A8MRD7_ARATH Cytochrome c oxidase subunit 5b-1, mitochondrial (AtCOX5b-1),Putative cytochrome c oxidase subunit 5b-like,Cytochrome c oxidase subunit 5b-2, mitochondrial (AtCOX5b-2),Rubredoxin-like superfamily protein FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. {ECO:0000255|PROSITE-ProRule:PRU00692}. ARA:AT1G80230-MONOMER;MetaCyc:AT1G80230-MONOMER; 19416,10300,18583,19317 Cytochrome c oxidase subunit 5b-1, mitochondrial (AtCOX5b-1),Putative cytochrome c oxidase subunit 5b-like,Cytochrome c oxidase subunit 5b-2, mitochondrial (AtCOX5b-2),Rubredoxin-like superfamily protein chloroplast thylakoid membrane [GO:0009535]; mitochondrial respiratory chain complex IV [GO:0005751]; mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; cytochrome-c oxidase activity [GO:0004129]; metal ion binding [GO:0046872]; zinc ion binding [GO:0008270]; mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial electron transport, cytochrome c to oxygen [GO:0006123],mitochondrial respiratory chain complex IV [GO:0005751]; cytochrome-c oxidase activity [GO:0004129]; metal ion binding [GO:0046872]; mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial electron transport, cytochrome c to oxygen [GO:0006123],mitochondrial respiratory chain complex IV [GO:0005751]; mitochondrion [GO:0005739]; cytochrome-c oxidase activity [GO:0004129]; metal ion binding [GO:0046872]; mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial electron transport, cytochrome c to oxygen [GO:0006123],mitochondrial envelope [GO:0005740]; cytochrome-c oxidase activity [GO:0004129] locus:2093267;,locus:2035069;,locus:2016284; AT3G15640,AT1G52710,AT1G80230 cytochrome c oxidase Os06g0142700 protein (Putative cytochrome c oxidase subunit Vb) (cDNA clone:J023098B10, full insert sequence) Q9SNQ3 Q9SNQ3_ORYSJ Os06g0142700 Os06g0142700 OsJ_20088 OSNPB_060142700 P0535G04.28 ENOG411E3PY Q9M148 Q9M148_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein (Uncharacterized protein At4g01200) 27369 Calcium-dependent lipid-binding (CaLB domain) family protein (Uncharacterized protein At4g01200) locus:2124933; AT4G01200 C2 Os01g0659800 protein (cDNA clone:002-146-A02, full insert sequence) Q8SA25 Q8SA25_ORYSJ Os01g0659800 Os01g0659800 OSNPB_010659800 P0445H04.8 P0684E06.19 ENOG411E3PZ Q9LTJ3,A0A1P8BC96,A0A1P8BC91 Q9LTJ3_ARATH,A0A1P8BC96_ARATH,A0A1P8BC91_ARATH Transmembrane protein (Uncharacterized protein At5g59350),Transmembrane protein 32446,22769,31993 Transmembrane protein (Uncharacterized protein At5g59350),Transmembrane protein integral component of membrane [GO:0016021] locus:2148278; AT5G59350 NA Expressed protein (Os11g0703600 protein) (cDNA clone:001-008-G09, full insert sequence),Os11g0703600 protein (Fragment) Q53NN2,A0A0P0Y6B0 Q53NN2_ORYSJ,A0A0P0Y6B0_ORYSJ Os11g0703600 LOC_Os11g47730 Os11g0703600 OsJ_34851 OSNPB_110703600,Os11g0703600 OSNPB_110703600 ENOG411E3PT A0A1P8B3J8,A0A1P8B3K2,F4JGG1 A0A1P8B3J8_ARATH,A0A1P8B3K2_ARATH,F4JGG1_ARATH Carbohydrate-binding X8 domain superfamily protein 18899,14193,15844 Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:2115919; AT4G05430 X8 domain Os07g0149900 protein (Fragment) A0A0P0X2A3 A0A0P0X2A3_ORYSJ Os07g0149900 OSNPB_070149900 ENOG411E3PU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0499000 protein (cDNA clone:002-129-H07, full insert sequence) Q7F8T2 Q7F8T2_ORYSJ Os08g0499000 OSNPB_080499000 P0026F07.32 ENOG411E3PV HINT 2 Q8GYJ9,A0A1P8AVM2 Q8GYJ9_ARATH,A0A1P8AVM2_ARATH HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (Uncharacterized protein At1g31160) (Uncharacterized protein At1g31160/F28K20_9),HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 ARA:GQT-2183-MONOMER; 20401,16276 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (Uncharacterized protein At1g31160) (Uncharacterized protein At1g31160/F28K20_9),HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 chloroplast [GO:0009507]; catalytic activity [GO:0003824],catalytic activity [GO:0003824] locus:2029559; AT1G31160 Scavenger mRNA decapping enzyme C-term binding Os06g0667500 protein (Fragment) Q0DA95 Q0DA95_ORYSJ Os06g0667500 Os06g0667500 OSNPB_060667500 ENOG411E3PW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0229800 protein Q6H533 Q6H533_ORYSJ Os02g0229800 Os02g0229800 OSJNBb0035N08.21 OSNPB_020229800 ENOG411E3PP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os06g0603300 protein Q69XJ3 Q69XJ3_ORYSJ Os06g0603300 OSNPB_060603300 P0486H12.34 ENOG411E3PQ LBD31 O81322 LBD31_ARATH LOB domain-containing protein 31 (ASYMMETRIC LEAVES 2-like protein 22) (AS2-like protein 22) 23807 LOB domain-containing protein 31 (ASYMMETRIC LEAVES 2-like protein 22) (AS2-like protein 22) TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. locus:2126866; AT4G00210 lob domain-containing protein NA NA NA NA NA NA NA ENOG411E3PR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family NA NA NA NA NA NA NA ENOG411E3PS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Thioredoxin M1, chloroplastic (OsTrxm1) (OsTrx08),Thioredoxin M2, chloroplastic (OsTrxm2) (OsTrx14) Q6H7E4,Q7X8R5 TRXM1_ORYSJ,TRXM2_ORYSJ Os02g0639900 LOC_Os02g42700 OsJ_07676 P0010C01.26,Os04g0530600 LOC_Os04g44830 OsJ_15561 OSJNBa0074L08.22 OSJNBa0081C01.10 FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of chloroplastic enzymes. ENOG411E3NE ATS3B Q6NPM5 ATS3B_ARATH Embryo-specific protein ATS3B (Protein ARABIDOPSIS THALIANA SEED 3B) FUNCTION: May play a role during embryo development. {ECO:0000305}. 21071 Embryo-specific protein ATS3B (Protein ARABIDOPSIS THALIANA SEED 3B) anchored component of membrane [GO:0031225]; extracellular region [GO:0005576]; vacuolar membrane [GO:0005774] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, cauline leaves and flowers. {ECO:0000269|PubMed:26259197}. locus:2167908; AT5G62200 Embryo-specific protein 3 (ATS3) NA NA NA NA NA NA NA ENOG411E9S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EAA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Diacylglycerol acyltransferase NA NA NA NA NA NA NA ENOG411EAA5 T1G12.3,F2K15.190 Q9FIN5,Q9CA10,Q9M3A0,Q3E6X7 Q9FIN5_ARATH,Q9CA10_ARATH,Q9M3A0_ARATH,Q3E6X7_ARATH Emb|CAB66412.1 (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein T1G12.3),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein F2K15.190),Plant invertase/pectin methylesterase inhibitor superfamily protein 21164,23658,21308,20097 Emb|CAB66412.1 (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein T1G12.3),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein F2K15.190),Plant invertase/pectin methylesterase inhibitor superfamily protein pectinesterase inhibitor activity [GO:0046910],enzyme inhibitor activity [GO:0004857] locus:2152891;,locus:2082986;,locus:2027610; AT5G24370,AT3G49330,AT1G56620 Invertase pectin methylesterase inhibitor family protein NA NA NA NA NA NA NA ENOG411EAA4 A0A1I9LSH5,F4JBZ8,A0A1I9LSH4 A0A1I9LSH5_ARATH,F4JBZ8_ARATH,A0A1I9LSH4_ARATH Mental retardation GTPase activating protein 31841,33495,33566 Mental retardation GTPase activating protein locus:2076869; AT3G02500 NA NA NA NA NA NA NA NA ENOG411EAA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: kiaa1429 NA NA NA NA NA NA NA ENOG411EAA1 GATA19,GATA20 Q6QPM2,Q9ZPX0 GAT19_ARATH,GAT20_ARATH GATA transcription factor 19,GATA transcription factor 20 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 23319,23027 GATA transcription factor 19,GATA transcription factor 20 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2115195;,locus:2062095; AT4G36620,AT2G18380 ZnF_GATA NA NA NA NA NA NA NA ENOG411EAA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide methionine sulfoxide reductase Peptide methionine sulfoxide reductase A2-2 (OsMSRA2.2) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase),Peptide methionine sulfoxide reductase A2-1 (OsMSRA2.1) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) Q7XUP6,Q7XUP7 MSR22_ORYSJ,MSR21_ORYSJ MSRA2-2 Os04g0482100 LOC_Os04g40620 OSJNBb0011N17.17,MSRA2-1 Os04g0482000 LOC_Os04g40600 OsJ_15220 OSJNBb0011N17.16 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer (By similarity). {ECO:0000250}. ENOG411EAA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14-3-3-like protein GF14 kappa NA NA NA NA NA NA NA ENOG411EAA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein phosphatase 2C 73-like NA NA NA NA NA NA NA ENOG411EAAY MPK8,MPK15,MPK9 Q9LM33,Q9C9U4,A0A1I9LRW0,A0A1I9LRW2 MPK8_ARATH,MPK15_ARATH,A0A1I9LRW0_ARATH,A0A1I9LRW2_ARATH Mitogen-activated protein kinase 8 (AtMPK8) (MAP kinase 8) (EC 2.7.11.24),Mitogen-activated protein kinase 15 (AtMPK15) (MAP kinase 15) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24) DISRUPTION PHENOTYPE: More succeptible to oxidative stress. {ECO:0000269|PubMed:21419340}. FUNCTION: MKK3-MPK8 and CAMs-MPK8 modules negatively regulates ROS accumulation through controlling expression of the RBOHD gene during wounding. {ECO:0000269|PubMed:21419340}. 2.7.11.24 66231,65251,74397,70771 Mitogen-activated protein kinase 8 (AtMPK8) (MAP kinase 8) (EC 2.7.11.24),Mitogen-activated protein kinase 15 (AtMPK15) (MAP kinase 15) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468]; response to hydrogen peroxide [GO:0042542]; response to jasmonic acid [GO:0009753]; response to reactive oxygen species [GO:0000302]; response to wounding [GO:0009611],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468],intracellular [GO:0005622]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:21419340}. locus:2194040;,locus:2027814; AT1G18150,AT1G73670 S_TKc NA NA NA NA NA NA NA ENOG411EAAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Interferon-related developmental regulator (IFRD) NA NA NA NA NA NA NA ENOG411EAAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalase-related immune-responsive NA NA NA NA NA NA NA ENOG411EAAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family NA NA NA NA NA NA NA ENOG411EAAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411EAAQ Q9T007,Q9T008 Q9T007_ARATH,Q9T008_ARATH Uncharacterized protein AT4g35200 (Uncharacterized protein T12J5.70),Carrier protein (DUF241) (Uncharacterized protein AT4g35210) (Uncharacterized protein T12J5.80) 28350,27943 Uncharacterized protein AT4g35200 (Uncharacterized protein T12J5.70),Carrier protein (DUF241) (Uncharacterized protein AT4g35210) (Uncharacterized protein T12J5.80) locus:2132826;,locus:2132831; AT4G35200,AT4G35210 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411EAAP Q9C9Y8 Y3868_ARATH Probable inactive receptor kinase At3g08680 69406 Probable inactive receptor kinase At3g08680 integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2077898; AT3G08680 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EAAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Mate efflux family protein NA NA NA NA NA NA NA ENOG411EAAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411EAAN ACT7 P53492 ACT7_ARATH Actin-7 (Actin-2) Plants are dwarf and reach only 15% of the height of wild type. Roots lack root hairs- the initiate but do not develop further than a bulge. Leaves are small with reduced surface area and fewer lobes. Leaf trichomes are abnormal and contain fewer branches. Also defects in flower morphology reduced fertility abnormal inflorescence structure and abnormal silique development.,Abnormal roots. Roots are shorted and have fewer root hairs (ca. 20% less than wild type). Root epidermal cells have abnormal morphology and bulge.,Plants are dwarf. Leaves are smaller and contain fewer cells and fewer lobes than wild type. Reduced number of trichome branches. Petals are narrow. Roots are more severely affected and produce short root hairs. Cell files are irregular and the elongation zone is much reduced. Short roots; Slow hormone-induced callus formation-R. Meagher-2003 FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins which is involved in the regulation of hormone-induced plant cell proliferation and callus formation. {ECO:0000269|PubMed:11449050}. MISCELLANEOUS: There are 8 actin genes in A.thaliana. R-ATH-2029482;R-ATH-5663213; 41736 Actin-7 (Actin-2) cell wall [GO:0005618]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200]; cell division [GO:0051301]; response to auxin [GO:0009733]; response to light stimulus [GO:0009416]; response to wounding [GO:0009611]; root development [GO:0048364]; root epidermal cell differentiation [GO:0010053]; root hair elongation [GO:0048767]; seed germination [GO:0009845] TISSUE SPECIFICITY: Constitutively expressed at high levels in young expanding vegetative tissues. Also strongly expressed in the hypocotyl and seed coat. Little or no expression is detected in mature pollen sacs, ovules, embryos or seeds. locus:2178128; AT5G09810 ACTIN Actin-2,Os12g0163700 protein,Actin (Actin-7, putative, expressed) (Os11g0163100 protein) (cDNA clone:001-035-C05, full insert sequence),Os05g0106600 protein (Putative actin) (cDNA clone:001-036-C04, full insert sequence) A3C6D7,Q0IPW3,Q67G20,Q65XH8 ACT2_ORYSJ,Q0IPW3_ORYSJ,Q67G20_ORYSJ,Q65XH8_ORYSJ ACT2 AC2 RAC2 Os10g0510000 LOC_Os10g36650 OsJ_030859 OSJNBa0005K07.1,Os12g0163700 Os12g0163700 OSNPB_120163700,Act LOC_Os11g06390 Os11g0163100 OsJ_33069 OSNPB_110163100,Os05g0106600 Os05g0106600 OSJNBb0035J08.15 OSNPB_050106600 FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.; FUNCTION: Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. MISCELLANEOUS: There are at least eight actin genes in rice. ENOG411EAAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter B family member 26 chloroplastic-like NA NA NA NA NA NA NA ENOG411EAAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411EAAJ GA20OX4 Q9C955 GAOX4_ARATH Gibberellin 20 oxidase 4 (EC 1.14.11.-) (GA 20-oxidase 4) (Gibberellin C-20 oxidase 4) FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. {ECO:0000250}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. MetaCyc:AT1G60980-MONOMER; 1.14.11.- 43133 Gibberellin 20 oxidase 4 (EC 1.14.11.-) (GA 20-oxidase 4) (Gibberellin C-20 oxidase 4) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to light stimulus [GO:0009416]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in roots. Detected in leaves, inflorescences and siliques, but not in stems and dry seeds. {ECO:0000269|PubMed:18069939}. locus:2206036; AT1G60980 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EAAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0282100 protein,Os08g0281500 protein,Os08g0281900 protein Q6YS18,A0A0P0XDX1,A0A0P0XE62 Q6YS18_ORYSJ,A0A0P0XDX1_ORYSJ,A0A0P0XE62_ORYSJ Os08g0282100 Os08g0282100 B1446H11.7 OsJ_26736 OSNPB_080282100,Os08g0281500 OSNPB_080281500,Os08g0281900 OSNPB_080281900 ENOG411EAAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Snf7 NA NA NA NA NA NA NA ENOG411EAAG Q9LTI3 MPU11_ARATH Mannose-P-dolichol utilization defect 1 protein homolog 1 R-ATH-446193; 26419 Mannose-P-dolichol utilization defect 1 protein homolog 1 integral component of membrane [GO:0016021]; dolichol-linked oligosaccharide biosynthetic process [GO:0006488]; transport [GO:0006810] locus:2148328; AT5G59470 CTNS NA NA NA NA NA NA NA ENOG411EAAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EAAA Q9FG39 PMTC_ARATH Probable methyltransferase PMT12 (EC 2.1.1.-) 2.1.1.- 77711 Probable methyltransferase PMT12 (EC 2.1.1.-) cytoplasm [GO:0005737]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2153704; AT5G06050 Pfam:DUF248 NA NA NA NA NA NA NA ENOG411EAAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411EAAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic translation initiation factor 3 subunit 8 N-terminus NA NA NA NA NA NA NA ENOG411EJJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0410701 protein A0A0P0WMC8 A0A0P0WMC8_ORYSJ Os05g0410701 OSNPB_050410701 ENOG411E6GP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr Os02g0189400 protein (cDNA clone:002-139-A12, full insert sequence) Q6YUV0 Q6YUV0_ORYSJ Os02g0189400 Os02g0189400 OJ1145_F01.28 OSJNBb0031B09.7 OSNPB_020189400 ENOG411E2CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E2C4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os05g0382200 protein Q0DIK5 Q0DIK5_ORYSJ Os05g0382200 Os05g0382200 OSNPB_050382200 ENOG411E2C5 Q0WQ63,A0A1I9LPR9 ERDL8_ARATH,A0A1I9LPR9_ARATH Sugar transporter ERD6-like 8,Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 51024,52674 Sugar transporter ERD6-like 8,Major facilitator superfamily protein integral component of membrane [GO:0016021]; nucleus [GO:0005634]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2096219; AT3G05150 sugar transporter NA NA NA NA NA NA NA ENOG411E2C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin response factor NA NA NA NA NA NA NA ENOG411E2C0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411E6GQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY NA NA NA NA NA NA NA ENOG411DQP1 Q940M0,F4I583 Q940M0_ARATH,F4I583_ARATH At1g63980/F22C12_9 (D111/G-patch domain-containing protein),D111/G-patch domain-containing protein Albino plants where total clorophylls and cartenoids are less than 1% and 2% respectively of wildtype contents.,Chloroplasts of mesophyll cells completely lack thylakoids and are filled with large vesicles.,Round-shaped chloroplasts in mesophyll cells of mutant (lens-shaped in wildtype). 43439,43237 At1g63980/F22C12_9 (D111/G-patch domain-containing protein),D111/G-patch domain-containing protein nucleic acid binding [GO:0003676] locus:2024608; AT1G63980 G-patch domain NA NA NA NA NA NA NA ENOG411DQP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 9 Endoglucanase 21 (EC 3.2.1.4) (Endo-1,4-beta glucanase 21) (OsGLU9) Q84Q51 GUN21_ORYSJ GLU9 Os08g0425300 LOC_Os08g32940 P0456B03.110 ENOG411DQP3 CYP90B1,DWF4 O64989,A0A1I9LT77 C90B1_ARATH,A0A1I9LT77_ARATH Cytochrome P450 90B1 (EC 1.14.-.-) (Protein DWARF 4) (Dwarf4) (Steroid 22-alpha-hydroxylase),Cytochrome P450 superfamily protein Dwarf phenotype.,In the presence of 1 microM brassinazole an inhibitor of brassinolide biosynthesis the mutant hypocotyls display the same gravitropic time course as that of wildtype.,Mutant hypocotyls are more sensitive to IAA treatment (inhibition of growth) than those of wildtype.,Short hypocotyls when grown in dark conditions.,Short stem dark green and round leaves with short petioles. Has more lateral shoots than wildtype (Col).,Similar phototropic response of etiolated hypocotyls compared to that of wildtype.,Gravitropic curvature similar to that of wildtype (Col) when dark-grown. Over time however the curvature becomes intermediate between that of the nph4 single mutant and wildtype.,Leaves and cotyledons are only weakly epinastic.,Completely infertile. Dwarf-K. Feldmann-1998 FUNCTION: Catalyzes the C22-alpha-hydroxylation step in brassinosteroids biosynthesis. Converts campestanol to 6-deoxocathasterone and 6-oxocampestanol to cathasterone. PATHWAY: Plant hormone biosynthesis; brassinosteroid biosynthesis. ARA:AT3G50660-MONOMER;MetaCyc:AT3G50660-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.99.B1; 1.14.-.- 58868,51413 Cytochrome P450 90B1 (EC 1.14.-.-) (Protein DWARF 4) (Dwarf4) (Steroid 22-alpha-hydroxylase),Cytochrome P450 superfamily protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; fatty acid alpha-hydroxylase activity [GO:0080132]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; steroid 22-alpha hydroxylase activity [GO:0010012]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; jasmonic acid mediated signaling pathway [GO:0009867]; leaf development [GO:0048366]; leaf shaping [GO:0010358]; response to brassinosteroid [GO:0009741]; response to jasmonic acid [GO:0009753]; sterol metabolic process [GO:0016125]; unidimensional cell growth [GO:0009826],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Expressed in stems, leaves, shoots, and roots, with a higher expression in siliques and apical shoots. {ECO:0000269|PubMed:12529536}. locus:2101704; AT3G50660 cytochrome P450 Cytochrome P450 90B2 (EC 1.14.13.-) (Protein DWARF4 homolog) (OsDWARF4) (Steroid 22-alpha-hydroxylase) Q5CCK3 C90B2_ORYSJ CYP90B2 DWARF4 Os03g0227700 LOC_Os03g12660 OJ1626B05.9 DISRUPTION PHENOTYPE: Slight dwarf phenotype and erect leaves. {ECO:0000269|PubMed:16369540}. FUNCTION: Catalyzes the C22-alpha-hydroxylation step in brassinosteroid biosynthesis, which is the rate-limiting step in this biosynthetic pathway. Converts campestanol to 6-deoxocathasterone and 6-oxocampestanol to cathasterone. {ECO:0000269|PubMed:16369540}. ENOG411DQP2 RF178 Q8GW10,A0A1P8B1L9,B3H525,B3H7B1 BAH1L_ARATH,A0A1P8B1L9_ARATH,B3H525_ARATH,B3H7B1_ARATH Probable E3 ubiquitin-protein ligase BAH1-like (EC 2.3.2.27) (RING finger protein 178) (RING-type E3 ubiquitin transferase BAH1-like),SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 38859,28636,27284,38772 Probable E3 ubiquitin-protein ligase BAH1-like (EC 2.3.2.27) (RING finger protein 178) (RING-type E3 ubiquitin transferase BAH1-like),SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567] locus:2064935; AT2G38920 E3 ubiquitin-protein ligase BAH1-like Probable E3 ubiquitin-protein ligase BAH1-like 1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BAH1-like 1) Q7XZZ3 BAHL1_ORYSJ Os03g0650900 LOC_Os03g44810 OsJ_11925 OSJNBa0093M23.3 ENOG411DQP5 Q5PP33 Q5PP33_ARATH At5g19500 (Tryptophan/tyrosine permease) 54358 At5g19500 (Tryptophan/tyrosine permease) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of plasma membrane [GO:0005887]; aromatic amino acid transmembrane transporter activity [GO:0015173]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333] locus:2180801; AT5G19500 Tryptophan/tyrosine permease family Os07g0662800 protein A0A0P0XAM8 A0A0P0XAM8_ORYSJ Os07g0662800 OSNPB_070662800 ENOG411DQP4 O49448 O49448_ARATH Extensin-like protein (Leucine-rich repeat (LRR) family protein) 42701 Extensin-like protein (Leucine-rich repeat (LRR) family protein) locus:2121348; AT4G28380 leucine-rich repeat NA NA NA NA NA NA NA ENOG411DQP7 LYM2 O23006 LYM2_ARATH LysM domain-containing GPI-anchored protein 2 (Chitin elicitor-binding protein LYM2) (CEBiP LYM2) FUNCTION: Chitin elicitor-binding protein involved in the perception of chitin oligosaccharide elicitor. {ECO:0000269|PubMed:22891159}. 37739 LysM domain-containing GPI-anchored protein 2 (Chitin elicitor-binding protein LYM2) (CEBiP LYM2) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; chitin binding [GO:0008061]; defense response [GO:0006952] locus:2827686; AT2G17120 lysM domain-containing GPI-anchored protein Os09g0548200 protein Q0IZU8 Q0IZU8_ORYSJ Os09g0548200 OSNPB_090548200 ENOG411DQP6 RPT6A,RPT6B Q9C5U3,Q94BQ2,A0A1P8BCJ5 PRS8A_ARATH,PRS8B_ARATH,A0A1P8BCJ5_ARATH 26S proteasome regulatory subunit 8 homolog A (26S proteasome AAA-ATPase subunit RPT6a) (26S proteasome subunit 8 homolog A) (Regulatory particle triple-A ATPase subunit 6a),26S proteasome regulatory subunit 8 homolog B (26S proteasome AAA-ATPase subunit RPT6b) (26S proteasome subunit 8 homolog B) (Regulatory particle triple-A ATPase subunit 6b),Regulatory particle triple-A ATPase 6A FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 47248,47157,40689 26S proteasome regulatory subunit 8 homolog A (26S proteasome AAA-ATPase subunit RPT6a) (26S proteasome subunit 8 homolog A) (Regulatory particle triple-A ATPase subunit 6a),26S proteasome regulatory subunit 8 homolog B (26S proteasome AAA-ATPase subunit RPT6b) (26S proteasome subunit 8 homolog B) (Regulatory particle triple-A ATPase subunit 6b),Regulatory particle triple-A ATPase 6A cytosol [GO:0005829]; cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; protein catabolic process [GO:0030163] locus:2147670;,locus:2147685; AT5G19990,AT5G20000 26S protease regulatory subunit 8 Os06g0600100 protein (Putative 26S proteasome regulatory particle triple-A ATPase subunit6) (cDNA clone:J013034M24, full insert sequence),26S proteasome regulatory particle triple-A ATPase subunit6 (Os02g0205300 protein) (cDNA clone:001-039-B03, full insert sequence) (cDNA clone:001-208-H03, full insert sequence) (cDNA clone:J033089I16, full insert sequence) Q69X47,Q7GCH3 Q69X47_ORYSJ,Q7GCH3_ORYSJ Os06g0600100 OsJ_21883 OSNPB_060600100 P0457B11.5 P0642B07.69,OsRPT6 Os02g0205300 OsJ_05824 OSJNBb0056C19.22 OSNPB_020205300 P0544H11.38 ENOG411DQP9 PAA2,PAA1 B9DFX7,Q9SZC9,F4JIZ4,A0A1P8BE56,F4K8C8 HMA8_ARATH,HMA6_ARATH,F4JIZ4_ARATH,A0A1P8BE56_ARATH,F4K8C8_ARATH Copper-transporting ATPase PAA2, chloroplastic (EC 3.6.3.4) (Protein HEAVY METAL ATPASE 8),Copper-transporting ATPase PAA1, chloroplastic (EC 3.6.3.54) (Protein HEAVY METAL ATPASE 6) (Protein glucose insensitive root 1),P-type ATP-ase 1,P-type ATPase of Arabidopsis 2 DISRUPTION PHENOTYPE: High-chlorophyll-fluorescence phenotype. {ECO:0000269|PubMed:15772282}.,DISRUPTION PHENOTYPE: High-chlorophyll-fluorescence phenotype. Short roots. {ECO:0000269|PubMed:12782727, ECO:0000269|Ref.8}. Slow growth; High chlorophyll fluorescence-M. Pilon-2003 FUNCTION: Mediates copper transfer across the chloroplast thylakoid membrane. Required for copper delivery into the thylakoids lumen, which is essential for the function of copper proteins. {ECO:0000269|PubMed:15772282}.,FUNCTION: Mediates copper transfer across the plastid envelope. Required for the delivery of copper into the plastid stroma, which is essential for the function of copper proteins. Seems to be selective for monovalent copper Cu(+) transport. Plays also a role in glucose signaling-mediated cell proliferation of root meristem in non-green tissues. {ECO:0000269|PubMed:12782727, ECO:0000269|PubMed:15772282, ECO:0000269|PubMed:21878617, ECO:0000269|Ref.8}. ARA:AT5G21930-MONOMER;MetaCyc:MONOMER-14496;,ARA:AT4G33520-MONOMER;MetaCyc:MONOMER-14495; 3.6.3.4; 3.6.3.4,3.6.3.54 94260,99997,100096,87615,91860 Copper-transporting ATPase PAA2, chloroplastic (EC 3.6.3.4) (Protein HEAVY METAL ATPASE 8),Copper-transporting ATPase PAA1, chloroplastic (EC 3.6.3.54) (Protein HEAVY METAL ATPASE 6) (Protein glucose insensitive root 1),P-type ATP-ase 1,P-type ATPase of Arabidopsis 2 chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; copper ion transmembrane transporter activity [GO:0005375]; copper-exporting ATPase activity [GO:0004008]; metal ion binding [GO:0046872]; copper ion transport [GO:0006825],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; ATP binding [GO:0005524]; cation-transporting ATPase activity [GO:0019829]; copper chaperone activity [GO:0016531]; copper ion transmembrane transporter activity [GO:0005375]; copper ion homeostasis [GO:0055070]; copper ion transmembrane transport [GO:0035434]; photosynthetic electron transport chain [GO:0009767],integral component of membrane [GO:0016021]; cation-transporting ATPase activity [GO:0019829]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed in the shoots only and not in the roots. {ECO:0000269|PubMed:15772282}.,TISSUE SPECIFICITY: Expressed in the shoots and roots. {ECO:0000269|PubMed:15772282}. locus:504956435;,locus:2119265; AT5G21930,AT4G33520 copper-transporting ATPase Os08g0486100 protein (Fragment),Os03g0178100 protein Q0J4V8,A0A0P0VTT2 Q0J4V8_ORYSJ,A0A0P0VTT2_ORYSJ Os08g0486100 Os08g0486100 OSNPB_080486100,Os03g0178100 OSNPB_030178100 ENOG411DQP8 CBSDUFCH2,CBSDUFCH1 Q84R21,Q9LK65,A0A1P8AR56 Y1559_ARATH,Y3307_ARATH,A0A1P8AR56_ARATH DUF21 domain-containing protein At1g55930, chloroplastic (CBS domain-containing protein CBSDUFCH2),Putative DUF21 domain-containing protein At3g13070, chloroplastic (CBS domain-containing protein CBSDUFCH1),CBS domain-containing protein / transporter associated domain-containing protein 72929,73753,66360 DUF21 domain-containing protein At1g55930, chloroplastic (CBS domain-containing protein CBSDUFCH2),Putative DUF21 domain-containing protein At3g13070, chloroplastic (CBS domain-containing protein CBSDUFCH1),CBS domain-containing protein / transporter associated domain-containing protein chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; transport [GO:0006810],chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; transport [GO:0006810],integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2012045;,locus:2090024; AT1G55930,AT3G13070 domain--containing protein Os03g0593200 protein (Fragment) A0A0P0W0P4 A0A0P0W0P4_ORYSJ Os03g0593200 OSNPB_030593200 ENOG411DQPC PROC1,P5CR P54904,F4K884 P5CR1_ARATH,F4K884_ARATH Pyrroline-5-carboxylate reductase (P5C reductase) (P5CR) (EC 1.5.1.2) (Protein EMBRYO DEFECTIVE 2772),Pyrroline-5-carboxylate (P5C) reductase Embryo defective; Preglobular-D. Meinke-2007 PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L-proline from L-glutamate 5-semialdehyde: step 1/1. R-ATH-70614; Biosynthesis of secondary metabolites (01110),Arginine and proline metabolism (00330),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 1.5.1.2 28624,23243 Pyrroline-5-carboxylate reductase (P5C reductase) (P5CR) (EC 1.5.1.2) (Protein EMBRYO DEFECTIVE 2772),Pyrroline-5-carboxylate (P5C) reductase cell wall [GO:0005618]; cytoplasm [GO:0005737]; pyrroline-5-carboxylate reductase activity [GO:0004735]; L-proline biosynthetic process [GO:0055129]; response to heat [GO:0009408]; response to salt stress [GO:0009651],pyrroline-5-carboxylate reductase activity [GO:0004735]; proline biosynthetic process [GO:0006561] locus:2185435; AT5G14800 pyrroline-5-carboxylate reductase Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (Fragment),Pyrroline-5-carboxylate reductase (EC 1.5.1.2) Q0JG21,Q8GT01 Q0JG21_ORYSJ,Q8GT01_ORYSJ Os01g0948400 Os01g0948400 OSNPB_010948400,P0466H10.37-1 Os01g0948400 OsJ_04755 OSNPB_010948400 ENOG411DQPB Q94K74 Q94K74_ARATH Transmembrane protein (Uncharacterized protein At3g25805) 38755 Transmembrane protein (Uncharacterized protein At3g25805) integral component of membrane [GO:0016021] locus:505006376; AT3G25805 NA OSJNBa0072F16.18 protein (Os04g0462300 protein) Q7XTF0 Q7XTF0_ORYSJ Os04g0462300 Os04g0462300 OSJNBa0072F16.18 OSNPB_040462300 ENOG411DQPE BETAC-AD,BETAB-AD O81742,Q9SUS3,A0A1P8B3B6,F4JNZ8 APBLC_ARATH,APBLB_ARATH,A0A1P8B3B6_ARATH,F4JNZ8_ARATH Beta-adaptin-like protein C (At-bC-Ad) (At-betaC-Ad) (AP complex subunit beta-C) (Adaptor protein complex AP subunit beta-C) (Beta-adaptin C) (Clathrin assembly protein complex beta large chain C),Beta-adaptin-like protein B (At-bB-Ad) (At-betaB-Ad) (AP complex subunit beta-B) (Adaptor protein complex AP subunit beta-B) (Beta-adaptin B) (Clathrin assembly protein complex beta large chain B),Beta-adaptin-like protein FUNCTION: Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (By similarity). {ECO:0000250}.,FUNCTION: Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. {ECO:0000256|PIRNR:PIRNR002291}. R-ATH-8856825;R-ATH-8856828; 99097,99372,88482,101916 Beta-adaptin-like protein C (At-bC-Ad) (At-betaC-Ad) (AP complex subunit beta-C) (Adaptor protein complex AP subunit beta-C) (Beta-adaptin C) (Clathrin assembly protein complex beta large chain C),Beta-adaptin-like protein B (At-bB-Ad) (At-betaB-Ad) (AP complex subunit beta-B) (Adaptor protein complex AP subunit beta-B) (Beta-adaptin B) (Clathrin assembly protein complex beta large chain B),Beta-adaptin-like protein clathrin adaptor complex [GO:0030131]; clathrin-coated vesicle membrane [GO:0030665]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; clathrin-coated vesicle membrane [GO:0030665]; Golgi apparatus [GO:0005794]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; plasma membrane [GO:0005886]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2117924;,locus:2128313; AT4G23460,AT4G11380 Beta-adaptin-like protein Os03g0355600 protein (Fragment) Q0DRT9,A0A0P0VXI9,A0A0N7KHA0,A0A0P0VXK2 Q0DRT9_ORYSJ,A0A0P0VXI9_ORYSJ,A0A0N7KHA0_ORYSJ,A0A0P0VXK2_ORYSJ Os03g0355600 Os03g0355600 OSNPB_030355600,Os03g0355600 OSNPB_030355600 ENOG411DQPG F7H19.240 Q93ZU3,O82754 Q93ZU3_ARATH,O82754_ARATH PAS domain-containing protein tyrosine kinase family protein (Putative serine/threonine kinase) R-ATH-430116;R-ATH-442742;R-ATH-5673000;R-ATH-5674135;R-ATH-5674499;R-ATH-5675221; 82153,82281 PAS domain-containing protein tyrosine kinase family protein (Putative serine/threonine kinase) ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; regulation of transcription, DNA-templated [GO:0006355],cytosol [GO:0005829]; intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; regulation of transcription, DNA-templated [GO:0006355] locus:2127228; AT4G23050 PAS fold NA NA NA NA NA NA NA ENOG411DQPF PAT12,A_TM018A10.8 Q5M757,A0A1P8B6M5 ZDH15_ARATH,A0A1P8B6M5_ARATH Probable protein S-acyltransferase 12 (EC 2.3.1.225) (Probable palmitoyltransferase At4g00840) (Zinc finger DHHC domain-containing protein At4g00840),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.5}. 2.3.1.225; 2.3.1.225 32866,24974 Probable protein S-acyltransferase 12 (EC 2.3.1.225) (Probable palmitoyltransferase At4g00840) (Zinc finger DHHC domain-containing protein At4g00840),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706],integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2134643; AT4G00840 DHHC palmitoyltransferase S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) (Fragment) A0A0P0X5F3 A0A0P0X5F3_ORYSJ Os07g0467800 OSNPB_070467800 ENOG411DQPI CSI3 F4I718 CSI3_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 3 DISRUPTION PHENOTYPE: No visible phenotype. The csi1 csi3 double mutants shows an enhanced cell expansion defect compared to csi1 as well as an additive reduction of cellulase synthase (CESA) complexes (CSCs) velocities. {ECO:0000269|PubMed:24368796}. FUNCTION: Regulator of the microtubular cytoskeleton (By similarity). Microtubule-associated protein involved in the association of cellulase synthase (CESA) complexes (CSCs) and cortical microtubules. Promotes dynamics of CSCs in the plasma membrane in both microtubules-dependent and microtubules-independent manners. Regulates primary cell wall biosynthesis and cellulose microfibrils organization (PubMed:24368796). {ECO:0000250|UniProtKB:F4IIM1, ECO:0000269|PubMed:24368796}. 231432 Protein CELLULOSE SYNTHASE INTERACTIVE 3 cellulose synthase complex [GO:0010330]; cortical microtubule [GO:0055028]; cytoplasm [GO:0005737]; endomembrane system [GO:0012505]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; multicellular organism development [GO:0007275]; plant-type cell wall cellulose biosynthetic process [GO:0052324]; protein localization to cortical microtubule cytoskeleton [GO:0072699]; regulation of cell shape [GO:0008360]; regulation of growth [GO:0040008]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in dark-grown hypocotyls, leaves (confined to vasculature and trichomes), stamen, pollen, developing siliques, and roots. Restricted in meristematic tissue of the shoot and root. Present in distinct punctae at the cell cortex, called microtubule-associated cellulose synthase compartments, that move with constant velocities of 10 to 3000 nm/min. {ECO:0000269|PubMed:24368796}. locus:2204700; AT1G77460 C2 domain NA NA NA NA NA NA NA ENOG411DQPH IF3-2,IF3-4 O82234,Q94B52,F4JQD8 IF32_ARATH,IF34_ARATH,F4JQD8_ARATH Translation initiation factor IF3-2, chloroplastic (AtIF3-2) (AtINFC-2) (Protein SUPPRESSOR OF VARIEGATION 9),Translation initiation factor IF3-4, chloroplastic (AtIF3-4) (AtINFC-4) (Protein SVR9-LIKE 1),Translation initiation factor 3 protein DISRUPTION PHENOTYPE: Chloroplast development defect, and leaf developmental abnormalities, such as virescent and serrated leaf phenotype, disorganized mesophyll cells, and altered cotyledon venation patterns. {ECO:0000269|PubMed:27535792}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:27535792}. FUNCTION: Chloroplast translation initiation factor that is essential for the coordination of leaf and chloroplast development (PubMed:27535792). IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity). {ECO:0000255|HAMAP-Rule:MF_00080, ECO:0000269|PubMed:27535792}. 35142,31823,28240 Translation initiation factor IF3-2, chloroplastic (AtIF3-2) (AtINFC-2) (Protein SUPPRESSOR OF VARIEGATION 9),Translation initiation factor IF3-4, chloroplastic (AtIF3-4) (AtINFC-4) (Protein SVR9-LIKE 1),Translation initiation factor 3 protein chloroplast [GO:0009507]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; chloroplast organization [GO:0009658]; leaf development [GO:0048366]; ribosome disassembly [GO:0032790],cell wall [GO:0005618]; chloroplast [GO:0009507]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; ribosome disassembly [GO:0032790],translation initiation factor activity [GO:0003743] TISSUE SPECIFICITY: Highly expressed in young, newly emerged leaves. {ECO:0000269|PubMed:27535792}. locus:2061380;,locus:2131929; AT2G24060,AT4G30690 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity) Os02g0794400 protein (Fragment) A0A0P0VQM8 A0A0P0VQM8_ORYSJ Os02g0794400 OSNPB_020794400 ENOG411DQPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FATC domain NA NA NA NA NA NA NA ENOG411DQPM KUOX1 F4K813,F4IV21,A0A1R7T3F2,F4JAP7 F4K813_ARATH,F4IV21_ARATH,A0A1R7T3F2_ARATH,F4JAP7_ARATH KAR-UP oxidoreductase 1,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 40102,40013,28088,40441 KAR-UP oxidoreductase 1,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; response to karrikin [GO:0080167],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; cellular response to hypoxia [GO:0071456],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2183429;,locus:2042356;,locus:2081962; AT5G07480,AT2G44800,AT3G60290 2OG-Fe(II) oxygenase superfamily Flavanone 3-dioxygenase 3 (EC 1.14.11.9) (Flavanone 3-beta-hydroxylase 3) (Flavanone 3-hydroxylase 3) (OsF3H-3) (Flavonoid 3-hydroxylase) (OsF3H) Q7XR84 FL3H3_ORYSJ F3H-3 F3H Os04g0667200 LOC_Os04g57160 OSJNBa0043A12.1 FUNCTION: Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R-dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants (PubMed:18413994, PubMed:18726614). Converts (2S)-eriodictyol to (+)-taxifolin and (2S)-naringenin to (+)-(2R/3R)-dihydrokaempferol in vitro (PubMed:18413994). {ECO:0000269|PubMed:18413994, ECO:0000269|PubMed:18726614}. ENOG411DQPN BAM2,BAM7 O65258,O80831 BAM2_ARATH,BAM7_ARATH Beta-amylase 2, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 9),Beta-amylase 7 (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 4) DISRUPTION PHENOTYPE: Normal growth rate and starch breakdown in leaves during the night. {ECO:0000269|PubMed:18390594}. FUNCTION: Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}. ARA:AT2G45880-MONOMER; 3.2.1.2 61398,77131 Beta-amylase 2, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 9),Beta-amylase 7 (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 4) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; polysaccharide catabolic process [GO:0000272],cytoplasm [GO:0005737]; nucleus [GO:0005634]; amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; polysaccharide catabolic process [GO:0000272]; regulation of shoot system development [GO:0048831] locus:2127033;,locus:2050720; AT4G00490,AT2G45880 beta-amylase Beta-amylase (EC 3.2.1.2) Q652P5 Q652P5_ORYSJ Os09g0569200 Os09g0569200 OJ1003_C09.20 OSNPB_090569200 ENOG411DQPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ protein Os01g0875700 protein (Putative DnaJ-like protein) (cDNA clone:001-121-H08, full insert sequence) Q5N8X4 Q5N8X4_ORYSJ Os01g0875700 Os01g0875700 OSNPB_010875700 P0698A10.28 ENOG411DQPS CPK3,CPK5,CPK26,CPK6 Q42479,Q38871,Q9SZM3,Q38872,F4JTL3 CDPK3_ARATH,CDPK5_ARATH,CDPKQ_ARATH,CDPK6_ARATH,F4JTL3_ARATH Calcium-dependent protein kinase 3 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK6) (AtCDPK6),Calcium-dependent protein kinase 5 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 5),Calcium-dependent protein kinase 26 (EC 2.7.11.1),Calcium-dependent protein kinase 6 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK3) (AtCDPK3) (Calmodulin-domain protein kinase CDPK isoform 6),Calcium-dependent protein kinase 26 ABA and Ca(2+) activation of slow-type anion channels and ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. However rapid-type anion channel current activity was not affected consistent with the partial stomatal closing response in double mutants via a proposed branched signaling network. Imposed Ca(2+) oscillation experiments revealed that Ca(2+)-reactive stomatal closure was reduced in CDPK double mutant plants. However long-lasting Ca(2+)-programmed stomatal closure was not impaired. Sensitive to salt-M. Teige-2010,Reduced stomatal closing in response to ABA and calcium-J. Schroeder-2006 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Functions in abscisic acid (ABA) regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure. {ECO:0000269|PubMed:17032064}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Functions in abscisic acid (ABA) regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure (PubMed:17032064). Phosphorylates FD (PubMed:25661797). {ECO:0000269|PubMed:17032064, ECO:0000269|PubMed:25661797}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 59336,62127,54343,61111,57619 Calcium-dependent protein kinase 3 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK6) (AtCDPK6),Calcium-dependent protein kinase 5 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 5),Calcium-dependent protein kinase 26 (EC 2.7.11.1),Calcium-dependent protein kinase 6 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK3) (AtCDPK3) (Calmodulin-domain protein kinase CDPK isoform 6),Calcium-dependent protein kinase 26 cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of anion channel activity [GO:0010359]; regulation of stomatal movement [GO:0010119]; response to salt stress [GO:0009651],cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; response to abscisic acid [GO:0009737],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of anion channel activity [GO:0010359]; regulation of stomatal movement [GO:0010119]; regulation of stomatal opening [GO:1902456]; response to abscisic acid [GO:0009737],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in both guard cells and mesophyll cells. {ECO:0000269|PubMed:17032064}.,TISSUE SPECIFICITY: Expressed in both guard cells and mesophyll cells (PubMed:17032064). Expressed in the shoot apical meristem (PubMed:25661797). {ECO:0000269|PubMed:17032064, ECO:0000269|PubMed:25661797}. locus:2128409;,locus:2122063;,locus:2827528;,locus:2120973; AT4G23650,AT4G35310,AT4G38230,AT2G17290 calcium-dependent protein kinase Calcium-dependent protein kinase 13 (OsCDPK13) (OsCPK13) (EC 2.7.11.1) (Calcium-dependent protein kinase OsCDPK7),Calcium-dependent protein kinase 15 (OsCDPK15) (OsCPK15) (EC 2.7.11.1),Calcium-dependent protein kinase 1 (OsCDPK1) (OsCPK1) (EC 2.7.11.1),Calcium-dependent protein kinase 5 (OsCDPK5) (OsCPK5) (EC 2.7.11.1),Calcium-dependent protein kinase 6 (OsCDPK6) (OsCPK6) (EC 2.7.11.1),Os04g0584600 protein (cDNA clone:006-204-D08, full insert sequence) Q9FXQ3,Q6I587,A2ZVI7,Q0DYK7,Q6K968,B7E429 CDPKD_ORYSJ,CDPKF_ORYSJ,CDPK1_ORYSJ,CDPK5_ORYSJ,CDPK6_ORYSJ,B7E429_ORYSJ CPK13 Os04g0584600 LOC_Os04g49510 OSJNBa0013K16.2,CPK15 Os05g0585500 LOC_Os05g50810 OSJNBa0009C07.9,CPK1 Os01g0622600 LOC_Os01g43410 OsJ_02652 P0501G01.10,CPK5 Os02g0685900 LOC_Os02g46090,CPK6 Os02g0832000 LOC_Os02g58520 OJ1149_C12.18,Os04g0584600 OSNPB_040584600 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). May function in signal transduction pathways that positively regulate responses to cold, salt and drought stresses (PubMed:10929125). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:10929125}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. MISCELLANEOUS: Plants over-expressing CPK13 display enhanced tolerance to cold, drought and salt stresses. {ECO:0000269|PubMed:10929125}. ENOG411DQPR PHS1,PHS2 Q9LIB2,Q9SD76 PHS1_ARATH,PHS2_ARATH Alpha-glucan phosphorylase 1 (AtPHS1) (EC 2.4.1.1) (Alpha-glucan phosphorylase, L isozyme) (Starch phosphorylase L),Alpha-glucan phosphorylase 2, cytosolic (AtPHS2) (EC 2.4.1.1) (Alpha-glucan phosphorylase, H isozyme) (Starch phosphorylase H) DISRUPTION PHENOTYPE: Small white lesions on the tips or margins of fully expanded leaves. {ECO:0000269|PubMed:15173560}. The leaves of mature mutant plants consistently had small white lesions on the tips or margins of fully expanded leaves. The lesions did not increase in size after appearance and were not bordered by chlorotic tissue. The frequency and severity of lesions varied between batches of plants but lesion-free mutant plants were rare. Further examination of the lesions on leaves of the mutant plants revealed that high levels of starch were present in the living cells bordering each lesion at the end of the night when the rest of the leaf had metabolized its starch. This starch accumulation occurred in a highly cell-specific manner with adjacent starch-rich and starch-free cells.,The average midday activity of hexokinase (HXK) was 20% higher in the mutant leaves statistically significant at the P = 0.1 level of confidence.,The midday and midnight activities of DPE1 DPE2 β-amylase and phosphoglucomutase (PGM) were not changed in the atphs2-1 leaves relative to wild-type leaves.,Apart from a slight increase in rosette leaf size no visible phenotype was observed. Chlorotic leaves-S. Smith-2004,Slightly larger rosette; Elevated maltose levels at night-T. Sharkey-2006 FUNCTION: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance. {ECO:0000250, ECO:0000269|PubMed:15173560}.,FUNCTION: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). {ECO:0000250}. ARA:AT3G29320-MONOMER;MetaCyc:AT3G29320-MONOMER;,ARA:AT3G46970-MONOMER; R-ATH-6798695;R-ATH-70221; 2.4.1.1; Starch and sucrose metabolism (00500),Biosynthesis of secondary metabolites (01110),Insulin signaling pathway (04910),Metabolic pathways (01100) 2.4.1.1 108585,95159 Alpha-glucan phosphorylase 1 (AtPHS1) (EC 2.4.1.1) (Alpha-glucan phosphorylase, L isozyme) (Starch phosphorylase L),Alpha-glucan phosphorylase 2, cytosolic (AtPHS2) (EC 2.4.1.1) (Alpha-glucan phosphorylase, H isozyme) (Starch phosphorylase H) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; glycogen phosphorylase activity [GO:0008184]; phosphorylase activity [GO:0004645]; pyridoxal phosphate binding [GO:0030170]; SHG alpha-glucan phosphorylase activity [GO:0102499]; glycogen catabolic process [GO:0005980]; response to temperature stimulus [GO:0009266]; response to water deprivation [GO:0009414],chloroplast [GO:0009507]; cytosol [GO:0005829]; glycogen phosphorylase activity [GO:0008184]; phosphorylase activity [GO:0004645]; pyridoxal phosphate binding [GO:0030170]; SHG alpha-glucan phosphorylase activity [GO:0102499]; glycogen catabolic process [GO:0005980]; response to cadmium ion [GO:0046686]; response to water deprivation [GO:0009414] locus:2093787;,locus:2075576; AT3G29320,AT3G46970 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However all known phosphorylases share catalytic and structural properties (By similarity) Alpha-1,4 glucan phosphorylase (EC 2.4.1.1),Alpha-1,4 glucan phosphorylase (EC 2.4.1.1) (Fragment) Q8LQ33,A0A0P0W399 Q8LQ33_ORYSJ,A0A0P0W399_ORYSJ Os01g0851700 OsJ_04098 OSNPB_010851700 P0529H11.34,Os03g0758100 OSNPB_030758100 FUNCTION: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. {ECO:0000256|RuleBase:RU000587}. ENOG411DQPU AP3M F4I562 AP3M_ARATH AP-3 complex subunit mu (Adaptor protein complex AP-3 subunit mu) (Adaptor protein-3 mu-adaptin) (Adaptor-related protein complex 3 subunit mu) (At-muD-Ad) (Mu3-adaptin) (Protein ZIG SUPPRESSOR 4) DISRUPTION PHENOTYPE: Slightly reduced gravitropic response. {ECO:0000269|PubMed:19884248}. Partially suppressed the abnormality of zig-1 in both gravitropism and stem morphology. FUNCTION: Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also functions in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles. {ECO:0000269|PubMed:21670741}. 46313 AP-3 complex subunit mu (Adaptor protein complex AP-3 subunit mu) (Adaptor protein-3 mu-adaptin) (Adaptor-related protein complex 3 subunit mu) (At-muD-Ad) (Mu3-adaptin) (Protein ZIG SUPPRESSOR 4) clathrin adaptor complex [GO:0030131]; cytoplasmic vesicle membrane [GO:0030659]; Golgi apparatus [GO:0005794]; gravitropism [GO:0009630]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2027564; AT1G56590 AP-3 complex subunit Os05g0383100 protein Q6AV18 Q6AV18_ORYSJ Os05g0383100 OJ1354_D07.2 OSNPB_050383100 ENOG411DQPW SYNO,NS1 O48593,A0A1P8B3X2 SYNO_ARATH,A0A1P8B3X2_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.22) (Asparaginyl-tRNA synthetase) (AsnRS) (AtNS1) (Protein OVULE ABORTION 8),Class II aminoacyl-tRNA and biotin synthetases superfamily protein DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterozygous plants 26% of ovules are aborted compared to 6% of ovules in wild type siblings. Ovule abortion; Gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 ARA:AT4G17300-MONOMER; 6.1.1.22 63698,66084 Asparagine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.22) (Asparaginyl-tRNA synthetase) (AsnRS) (AtNS1) (Protein OVULE ABORTION 8),Class II aminoacyl-tRNA and biotin synthetases superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; asparagine-tRNA ligase activity [GO:0004816]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; asparaginyl-tRNA aminoacylation [GO:0006421]; plant ovule development [GO:0048481],cytoplasm [GO:0005737]; asparagine-tRNA ligase activity [GO:0004816]; ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]; asparaginyl-tRNA aminoacylation [GO:0006421] locus:2130804; AT4G17300 Asparaginyl-tRNA synthetase Os07g0485400 protein (Fragment) A0A0P0X6F8 A0A0P0X6F8_ORYSJ Os07g0485400 OSNPB_070485400 ENOG411DQPV QUA2 Q9C9Q8 PMTT_ARATH Probable pectin methyltransferase QUA2 (EC 2.1.1.-) (Protein OVERSENSITIVE TO SUGAR 1) (Protein QUASIMODO 2) (Protein TUMOROUS SHOOT DEVELOPMENT 2) DISRUPTION PHENOTYPE: Deformed dwarf phenotype and reduced cell adhesion. Hypersensitive to imbalanced C:N ratio. {ECO:0000269|PubMed:17425712, ECO:0000269|PubMed:17461780, ECO:0000269|PubMed:18167546}. short darkgrown hypocotyls reduced cell adhesion and a dwarfed mature plant. 50% reduction in HG (homogalacturonan) content,short darkgrown hypocotyls reduced cell adhesion and a dwarfed mature plant,Increased activity of axial meristems reduced root growth and enhanced de-etiolation. Incomplete penetrance of rosette lethality; Tumor-like tissue develops instead of leaves and inflorescences-T. Schmulling-2007 FUNCTION: May be involved in the synthesis of homogalacturonan. Required for normal cell adhesion and plant development. {ECO:0000269|PubMed:17425712, ECO:0000269|PubMed:17461780, ECO:0000269|PubMed:18167546}. MISCELLANEOUS: Co-expressed with the galacturonosyltransferase GAUT8/QUASIMODO1. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.1.1.- 77897 Probable pectin methyltransferase QUA2 (EC 2.1.1.-) (Protein OVERSENSITIVE TO SUGAR 1) (Protein QUASIMODO 2) (Protein TUMOROUS SHOOT DEVELOPMENT 2) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; methyltransferase activity [GO:0008168]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; cell adhesion [GO:0007155]; homogalacturonan biosynthetic process [GO:0010289]; response to cytokinin [GO:0009735]; root development [GO:0048364]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17425712, ECO:0000269|PubMed:17461780, ECO:0000269|PubMed:18167546}. locus:2032130; AT1G78240 pectin methyltransferase Os02g0755000 protein (Putative early-responsive to dehydration stress protein) Q6Z692 Q6Z692_ORYSJ P0627E03.21 Os02g0755000 OSNPB_020755000 ENOG411DQPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase Acyl-[acyl-carrier-protein] desaturase 4, chloroplastic (EC 1.14.19.-) Q84MF1 STAD4_ORYSJ Os03g0423300 LOC_Os03g30950 OsJ_11322 OSJNBa0032H19 FUNCTION: Introduces a cis double bond in the acyl chain of an acyl-[acyl-carrier protein]. {ECO:0000305}. ENOG411DQPX ATPK1,ATPK2 P42818,Q39030 KPK1_ARATH,KPK2_ARATH Serine/threonine-protein kinase AtPK1/AtPK6 (EC 2.7.11.1) (Ribosomal-protein S6 kinase homolog 1),Serine/threonine-protein kinase AtPK2/AtPK19 (EC 2.7.11.1) (Ribosomal-protein S6 kinase homolog 2) Reduced fertility-L. Bogre-2010 FUNCTION: Downstream effector of TOR signaling pathway involved in osmotic stress response. Could be involved in the control of plant growth and development. Phosphorylates the ribosomal proteins P14, P16 and S6. Functions as a repressor of cell proliferation and required for maintenance of chromosome stability and ploidy levels through the RBR1-E2F pathway. {ECO:0000269|PubMed:20683442}.,FUNCTION: Downstream effector of TOR signaling pathway. May be involved in adaptation of plant to cold or high-salt conditions. MISCELLANEOUS: Plants overexpressing KPK1 are hypersensitive to osmotic stress. R-ATH-166208;R-ATH-198753;R-ATH-2559582;R-ATH-375165;R-ATH-444257;R-ATH-881907; 2.7.11.1; 2.7.11.1 52588,53037 Serine/threonine-protein kinase AtPK1/AtPK6 (EC 2.7.11.1) (Ribosomal-protein S6 kinase homolog 1),Serine/threonine-protein kinase AtPK2/AtPK19 (EC 2.7.11.1) (Ribosomal-protein S6 kinase homolog 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; negative regulation of cell proliferation [GO:0008285]; positive regulation of translation [GO:0045727]; protein phosphorylation [GO:0006468]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; positive regulation of translation [GO:0045727]; protein phosphorylation [GO:0006468]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Predominates during high metabolic activity in growing buds, root tips, leaf margins and germinating seeds. TISSUE SPECIFICITY: Expressed in all tissues. locus:2077873;,locus:2077843; AT3G08730,AT3G08720 serine threonine-protein kinase Os07g0680900 protein (Fragment),Non-specific serine/threonine protein kinase (EC 2.7.11.1),Os03g0333500 protein Q0D3L1,Q10LV1,A0A0N7KH78 Q0D3L1_ORYSJ,Q10LV1_ORYSJ,A0A0N7KH78_ORYSJ Os07g0680900 Os07g0680900 OSNPB_070680900,Os03g0334000 LOC_Os03g21620 Os03g0334000 OsJ_10738 OSNPB_030334000,Os03g0333500 OSNPB_030333500 ENOG411EMPR MDJ22.4 Q9FNJ9,F4K9Y6,A0A1P8BB43 CA1P_ARATH,F4K9Y6_ARATH,A0A1P8BB43_ARATH Probable 2-carboxy-D-arabinitol-1-phosphatase (EC 3.1.3.63),Phosphoglycerate/bisphosphoglycerate mutase family protein FUNCTION: Phosphoglycerate mutase-like protein lacking PGM activity, but having 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase activity. Prevents the accumulation of D-glycero-2,3-pentodiulose-1,5-bisphosphate (PDBP) a potent inhibitor of ribulose-1,5-bisphosphate carboxylase (RuBisCO). PDBP is produced during the oxidation of ribulose-1,5-bisphosphate, the substrate of RuBisCO. {ECO:0000250|UniProtKB:W5EP13}. 3.1.3.63 53114,50806,52147 Probable 2-carboxy-D-arabinitol-1-phosphatase (EC 3.1.3.63),Phosphoglycerate/bisphosphoglycerate mutase family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 2-carboxy-D-arabinitol-1-phosphatase activity [GO:0047538],catalytic activity [GO:0003824]; metabolic process [GO:0008152] locus:2162449; AT5G22620 phosphoglycerate mutase Os11g0150100 protein (Phosphoglycerate mutase family protein, expressed) (Phosphoglycerate mutase family, putative) (cDNA clone:001-047-F08, full insert sequence) Q53PY7 Q53PY7_ORYSJ Os11g0150100 LOC_Os11g05260 Os11g0150100 OSNPB_110150100 ENOG411EMPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM Os01g0237100 protein (Phosphoglycerate mutase-like) (cDNA clone:006-201-D10, full insert sequence) (cDNA clone:J013163L02, full insert sequence) Q5NAM1 Q5NAM1_ORYSJ Os01g0237100 Os01g0237100 OsJ_01035 OSJNBa0086P08.1 OSNPB_010237100 P0708G02.37 ENOG411EMPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMPI TPR2 Q940R2 Q940R2_ARATH At1g04130/F20D22_10 (Tetratricopeptide repeat (TPR)-like superfamily protein) 29813 At1g04130/F20D22_10 (Tetratricopeptide repeat (TPR)-like superfamily protein) NA Os03g0750100 protein A0A0P0W3Z6 A0A0P0W3Z6_ORYSJ Os03g0750100 OSNPB_030750100 ENOG411EMP3 FREE1 Q9ASS2 FREE1_ARATH Protein FREE1 (FYVE domain protein required for endosomal sorting 1) (FYVE domain-containing protein 1) DISRUPTION PHENOTYPE: Seedling lethality when homozygous (PubMed:25438943, PubMed:25699591). Degenerated root surface structures and vacuoles with altered morphology (PubMed:25699591). Accumulation of ubiquitinated membrane-associated proteins (PubMed:25699591). {ECO:0000269|PubMed:25438943, ECO:0000269|PubMed:25699591}. Pigment defective embryo-D. Meinke-2011 FUNCTION: Endosomal sorting complex required for transport (ESCRT) component regulating multivesicular body (MVB) protein sorting and plant growth (PubMed:25438943). Required for the formation of intra-luminal vesicles (ILVs)in MVBs (PubMed:25438943). Binds to phosphatidylinositol-3-phosphate (PI3P) and ubiquitin (PubMed:25438943, PubMed:24843126). Controls IRT1 recycling to the plasma membrane and impacts the polar delivery of this transporter to the outer plasma membrane domain (PubMed:24843126). Regulates ubiquitin-dependent membrane protein degradation, vacuolar transport, autophagy, and vacuole biogenesis (PubMed:25699591, PubMed:25624505). {ECO:0000269|PubMed:24843126, ECO:0000269|PubMed:25438943, ECO:0000269|PubMed:25624505, ECO:0000269|PubMed:25699591}. 65396 Protein FREE1 (FYVE domain protein required for endosomal sorting 1) (FYVE domain-containing protein 1) ESCRT I complex [GO:0000813]; late endosome membrane [GO:0031902]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; ubiquitin binding [GO:0043130]; intralumenal vesicle formation [GO:0070676]; iron ion homeostasis [GO:0055072]; multivesicular body assembly [GO:0036258]; protein transport [GO:0015031] TISSUE SPECIFICITY: Ubiquitous. Lowest expression in mature seeds. {ECO:0000269|PubMed:25438943}. locus:2198646; AT1G20110 FYVE NA NA NA NA NA NA NA ENOG411EMP1 A0JQ76,Q8GW42,A0A1P8B4D1 A0JQ76_ARATH,Q8GW42_ARATH,A0A1P8B4D1_ARATH At4g30993 (Calcineurin-like metallo-phosphoesterase superfamily protein),Calcineurin-like metallo-phosphoesterase superfamily protein 23489,31902,24500 At4g30993 (Calcineurin-like metallo-phosphoesterase superfamily protein),Calcineurin-like metallo-phosphoesterase superfamily protein locus:505006537; AT4G30993 NA Os06g0183700 protein (cDNA, clone: J075097N07, full insert sequence),Os06g0183700 protein Q5SML1,A0A0P0WTU8 Q5SML1_ORYSJ,A0A0P0WTU8_ORYSJ Os06g0183700 OSJNBb0036B04.21 OSNPB_060183700 P0554A06.5,Os06g0183700 OSNPB_060183700 ENOG411EMP7 A0A1I9LS69,F4IWB2 A0A1I9LS69_ARATH,F4IWB2_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein R-ATH-72163; 24839,31784 RNA-binding (RRM/RBD/RNP motifs) family protein integral component of membrane [GO:0016021]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2091856; AT3G20890 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FYVE Os06g0724100 protein (Zinc finger protein-like) (cDNA clone:001-033-E06, full insert sequence) Q5YLY5 Q5YLY5_ORYSJ Os06g0724100 OsJ_22693 OSNPB_060724100 P0535F09.32 ENOG411EMP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FYVE NA NA NA NA NA NA NA ENOG411EMP8 Q8L7U0,F4J129,F4J128 Q8L7U0_ARATH,F4J129_ARATH,F4J128_ARATH At3g03330/T21P5_25 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT3G03330-MONOMER; 35789,31567,41606 At3g03330/T21P5_25 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491],integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491] locus:2099689;,locus:2099659; AT3G03330,AT3G03350 Dehydrogenase reductase SDR family At3g03330/T21P5_25 (Os11g0265400 protein) (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (cDNA clone:J033090L02, full insert sequence) Q53LS6 Q53LS6_ORYSJ Os11g0265400 LOC_Os11g16410 Os11g0265400 OSNPB_110265400 ENOG411E7GV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0910900 protein (cDNA, clone: J053089D02, full insert sequence) Q5N7Y1 Q5N7Y1_ORYSJ Os01g0910900 Os01g0910900 OsJ_04498 OSNPB_010910900 P0456E05.39 P0470A12.7 ENOG411E2CX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os04g0421700 protein,Os02g0542200 protein (Putative far-red impaired response protein),Os02g0542200 protein (Fragment) Q0JD88,Q6ESZ2,A0A0P0VK64 Q0JD88_ORYSJ,Q6ESZ2_ORYSJ,A0A0P0VK64_ORYSJ Os04g0421700 Os04g0421700 OsJ_14798 OSNPB_040421700,P0472F10.13-1 Os02g0542200 OSNPB_020542200,Os02g0542200 OSNPB_020542200 ENOG411E2CY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0500500 protein) Q2QQB5 Q2QQB5_ORYSJ LOC_Os12g31620 Os12g0500500 OsJ_36184 OSNPB_120500500 ENOG411E2CZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Saposin-like type B region 1 family protein Os12g0112200 protein (Os12g0112250 protein),Os11g0112800 protein (Saposin-like type B, region 1 family protein, expressed) B9GBH9,Q0IV51 B9GBH9_ORYSJ,Q0IV51_ORYSJ Os12g0112200 Os12g0112250 OsJ_34984 OSNPB_120112200,Os11g0112800 LOC_Os11g02150 Os11g0112800 OSNPB_110112800 ENOG411E2CT Q9FH99 FB302_ARATH F-box protein At5g67140 25383 F-box protein At5g67140 locus:2155548; AT5G67140 f-box family F-box family protein-like (Os06g0166000 protein),Os06g0166000 protein Q5VRR5,A0A0P0WT71 Q5VRR5_ORYSJ,A0A0P0WT71_ORYSJ Os06g0166000 P0680A03.5-1 Os06g0166000 OsJ_20250 OSJNBa0015I14.31-1 OSNPB_060166000,Os06g0166000 OSNPB_060166000 ENOG411E2CU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN Os09g0536300 protein (Putative thaumatin-like protein) Q69JY8 Q69JY8_ORYSJ P0569E11.19 Os09g0536300 OSNPB_090536300 ENOG411E2CV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os01g0371500 protein (Putative glutathione transferase) (cDNA clone:001-109-B04, full insert sequence),Os01g0371400 protein (Putative glutathione transferase),Os01g0374000 protein (Putative glutathione transferase) (cDNA, clone: J075176C11, full insert sequence) Q9AS47,Q5ZCX6,Q93WM2 Q9AS47_ORYSJ,Q5ZCX6_ORYSJ,Q93WM2_ORYSJ Os01g0371500 B1039D07.6 OsJ_01801 OSNPB_010371500 P0493G01.37,Os01g0371400 B1039D07.5 OsJ_01800 OSNPB_010371400 P0493G01.36,Os01g0374000 Os01g0374000 B1039D07.43 B1045D11.21 OsJ_01822 OSNPB_010374000 ENOG411E2CW DI19-3,DI19-1,DI19-6,DI19 Q84J70,Q39083,Q6NM26,A0A1I9LRR2,F4I522 DI193_ARATH,DI191_ARATH,DI196_ARATH,A0A1I9LRR2_ARATH,F4I522_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 (AtDi19-3),Protein DEHYDRATION-INDUCED 19 (AtDi19-1),Protein DEHYDRATION-INDUCED 19 homolog 6 (AtDi19-6),Drought-responsive family protein,Drought-induced 19 24798,23275,24783,22567,23329 Protein DEHYDRATION-INDUCED 19 homolog 3 (AtDi19-3),Protein DEHYDRATION-INDUCED 19 (AtDi19-1),Protein DEHYDRATION-INDUCED 19 homolog 6 (AtDi19-6),Drought-responsive family protein,Drought-induced 19 nucleus [GO:0005634]; DNA binding [GO:0003677]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16786289}. locus:2078062;,locus:2148528; AT3G05700,AT1G56280,AT5G26990 protein DEHYDRATION-INDUCED 19 homolog Protein DEHYDRATION-INDUCED 19 homolog 2 (OsDi19-2) Q5W794 DI192_ORYSJ DI19-2 Os05g0358000 LOC_Os05g28980 OJ1045_C06.9 OsJ_017460 ENOG411E2CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Helix-loop-helix DNA-binding domain containing protein, expressed (Os12g0610200 protein) (cDNA clone:J013074J19, full insert sequence) Q0IM00 Q0IM00_ORYSJ Os12g0610200 LOC_Os12g41650 Os12g0610200 OSNPB_120610200 ENOG411E2CQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os02g0492500 protein (Fragment) A0A0P0VJA9 A0A0P0VJA9_ORYSJ Os02g0492500 OSNPB_020492500 ENOG411E2CR CYP712A2 F4K599 F4K599_ARATH Cytochrome P450, family 712, subfamily A, polypeptide 2 59312 Cytochrome P450, family 712, subfamily A, polypeptide 2 membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:504954896; AT5G06905 Cytochrome P450 NA NA NA NA NA NA NA ENOG411E2CS HIPP22,HIPP20 Q93VP2,Q9C9A3,A0A1P8AQB5 HIP22_ARATH,HIP20_ARATH,A0A1P8AQB5_ARATH Heavy metal-associated isoprenylated plant protein 22 (AtHIP22) (AtHIPP22) (Farnesylated protein 7) (AtFP7),Heavy metal-associated isoprenylated plant protein 20 (AtHIP20) (AtHIPP20),Heavy metal transport/detoxification superfamily protein DISRUPTION PHENOTYPE: No visible phenotype. Hipp20, hipp21 and hipp22 triple mutants are cadmium sensitive. {ECO:0000269|PubMed:21072340}. FUNCTION: Heavy-metal-binding protein. Binds cadmium. May be involved in cadmium transport and play a role in cadmium detoxification. {ECO:0000269|PubMed:21072340}. 17107,17383,16551 Heavy metal-associated isoprenylated plant protein 22 (AtHIP22) (AtHIPP22) (Farnesylated protein 7) (AtFP7),Heavy metal-associated isoprenylated plant protein 20 (AtHIP20) (AtHIPP20),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; membrane [GO:0016020]; transition metal ion binding [GO:0046914]; cadmium ion homeostasis [GO:0055073]; cellular transition metal ion homeostasis [GO:0046916]; detoxification of cadmium ion [GO:0071585]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed in lateral roots and mature anthers. {ECO:0000269|PubMed:21072340}.,TISSUE SPECIFICITY: Expressed in roots, shoot apical meristem, leaves and flowers. {ECO:0000269|PubMed:21072340}. locus:2017759;,locus:2026336; AT1G22990,AT1G71050 isoprenylated plant protein Farnesylated protein 2-like (Os01g0507700 protein) (cDNA clone:006-310-A06, full insert sequence) Q8LJL3 Q8LJL3_ORYSJ Os01g0507700 Os01g0507700 OsJ_01952 OSJNBa0094H06.28 OSNPB_010507700 ENOG411E2CM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endotransglucosylase hydrolase protein Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) A0A0P0XWT6 A0A0P0XWT6_ORYSJ Os10g0545500 OSNPB_100545500 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411E2CH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA amino acid transporter Amino acid transporter family protein, putative, expressed (Os12g0574000 protein) Q2QN95 Q2QN95_ORYSJ LOC_Os12g38570 Os12g0574000 OsJ_36608 OSNPB_120574000 ENOG411E2CJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAF domain NA NA NA NA NA NA NA ENOG411E2CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2CD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent serine protease that mediates the selective degradation of misfolded unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner (By similarity) Lon protease homolog, mitochondrial (EC 3.4.21.53),Os07g0689300 protein (Fragment) Q69UZ3,A0A0P0XAM0 LONM_ORYSJ,A0A0P0XAM0_ORYSJ Os07g0689300 LOC_Os07g48960 OJ1165_F02.125 P0597G07.108,Os07g0689300 OSNPB_070689300 FUNCTION: ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner. {ECO:0000255|HAMAP-Rule:MF_03120}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03120}. ENOG411E2CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA synthase-like NA NA NA NA NA NA NA ENOG411E2CF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411E2CG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nitrate transporter NA NA NA NA NA NA NA ENOG411E2CA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ubiquitin carboxyl-terminal hydrolase Os03g0192900 protein (Fragment) Q0DUD0 Q0DUD0_ORYSJ Os03g0192900 OSNPB_030192900 ENOG411E2CB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein family UPF0004 NA NA NA NA NA NA NA ENOG411E2C8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0241550 protein,Os09g0242000 protein A0A0P0XJ39,A0A0P0XJX3 A0A0P0XJ39_ORYSJ,A0A0P0XJX3_ORYSJ Os09g0241550 OSNPB_090241550,Os09g0242000 OSNPB_090242000 ENOG411E2C9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Calcium-dependent protein kinase 29 (OsCDPK29) (OsCPK29) (EC 2.7.11.1),Os12g0230200 protein Q2QVG8,A0A0P0Y8C5 CDPKT_ORYSJ,A0A0P0Y8C5_ORYSJ CPK29 Os12g0230200 LOC_Os12g12860,Os12g0230200 OSNPB_120230200 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411E2C6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain BHLH transcription factor (Os01g0111500 protein) (cDNA clone:002-146-B03, full insert sequence) Q0JRA9 Q0JRA9_ORYSJ Os01g0111500 Os01g0111500 OSNPB_010111500 ENOG411E2C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative undecaprenyl diphosphate synthase NA NA NA NA NA NA NA ENOG411E2C2 PCMP-H15 Q9FND6 PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial 68670 Pentatricopeptide repeat-containing protein At5g40410, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2170548; AT5G40410 Pentatricopeptide repeat-containing protein At5g40410 NA NA NA NA NA NA NA ENOG411E2C3 Q9C8D3 Q9C8D3_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Oxidoreductase, putative) 40098 NAD(P)-binding Rossmann-fold superfamily protein (Oxidoreductase, putative) oxidoreductase activity [GO:0016491] locus:2013805; AT1G66130 Oxidoreductase family NAD-binding Rossmann fold NA NA NA NA NA NA NA ENOG411EEPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEPS F1I16_100 Q9M053 Q9M053_ARATH At3g55690 (Uncharacterized protein At3g55690) (Uncharacterized protein F1I16_100) 32106 At3g55690 (Uncharacterized protein At3g55690) (Uncharacterized protein F1I16_100) locus:2078906; AT3G55690 NA NA NA NA NA NA NA NA ENOG411EEPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hybrid-cluster protein NA NA NA NA NA NA NA ENOG411EEPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411EEPV AGAMOUS-like 55,AGAMOUS-like-56 Q9C960,Q9C963 Q9C960_ARATH,Q9C963_ARATH AGAMOUS-like 55 (Uncharacterized protein T7P1.6),AGAMOUS-like-56 (Uncharacterized protein T7P1.3) 21501,22659 AGAMOUS-like 55 (Uncharacterized protein T7P1.6),AGAMOUS-like-56 (Uncharacterized protein T7P1.3) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2206016;,locus:2206081; AT1G60920,AT1G60880 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E9XZ TOL8 Q9C9Y1 TOL8_ARATH TOM1-like protein 8 FUNCTION: Might contribute to the loading of the ESCRT machinery. {ECO:0000305|PubMed:16488176}. 66686 TOM1-like protein 8 intracellular [GO:0005622]; membrane [GO:0016020]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Specifically expressed in siliques and flowers. {ECO:0000269|PubMed:24699223}. locus:2077808; AT3G08790 VHS NA NA NA NA NA NA NA ENOG411E9XX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os09g0381000 protein,Os05g0143700 protein A0A0P0XMH7,A0A0P0WHU1 A0A0P0XMH7_ORYSJ,A0A0P0WHU1_ORYSJ Os09g0381000 OSNPB_090381000,Os05g0143700 OSNPB_050143700 ENOG411E9XY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter NA NA NA NA NA NA NA ENOG411E9XV FBL16,SKIP2 Q9SN10,Q9FE83 FBL16_ARATH,SKIP2_ARATH F-box/LRR-repeat protein 16,F-box protein SKIP2 (SKP1-interacting partner 2) Defects in lateral root formation delayed root elongation and delayed plant growth. Reduced cell size. FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 57249,57393 F-box/LRR-repeat protein 16,F-box protein SKIP2 (SKP1-interacting partner 2) cytoplasm [GO:0005737]; ubiquitin-protein transferase activity [GO:0004842],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842] locus:2083143;,locus:2155578; AT3G50080,AT5G67250 VIER F-box NA NA NA NA NA NA NA ENOG411E9XW CNGC19,CNGC20 Q9LDR2,Q9LD37,A0A1I9LMT8,A0A1I9LMT9 CNG19_ARATH,CNG20_ARATH,A0A1I9LMT8_ARATH,A0A1I9LMT9_ARATH Putative cyclic nucleotide-gated ion channel 19 (Cyclic nucleotide-binding transporter 2),Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Cyclic nucleotide-binding transporter 1),Cyclic nucleotide gated channel 19 FUNCTION: Putative cyclic nucleotide-gated ion channel.,FUNCTION: Probable cyclic nucleotide-gated ion channel. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 84049,86950,59482,73790 Putative cyclic nucleotide-gated ion channel 19 (Cyclic nucleotide-binding transporter 2),Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Cyclic nucleotide-binding transporter 1),Cyclic nucleotide gated channel 19 integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391],chloroplast thylakoid membrane [GO:0009535]; integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] locus:2090562;,locus:2090572; AT3G17690,AT3G17700 cyclic nucleotide NA NA NA NA NA NA NA ENOG411E9XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain Os03g0362032 protein (Fragment),Os03g0361500 protein A0A0P0VYK6,A0A0P0VYH6 A0A0P0VYK6_ORYSJ,A0A0P0VYH6_ORYSJ Os03g0362032 OSNPB_030362032,Os03g0361500 OSNPB_030361500 ENOG411E9XU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411E9XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411E9XS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E9XP F4JAZ0 F4JAZ0_ARATH Ubiquitin-conjugating enzyme family protein 42443 Ubiquitin-conjugating enzyme family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; anaphase-promoting complex-dependent catabolic process [GO:0031145]; protein polyubiquitination [GO:0000209]; regulation of mitotic metaphase/anaphase transition [GO:0030071] locus:504955767; AT3G12775 Ubiquitin-conjugating enzyme family protein NA NA NA NA NA NA NA ENOG411E9XQ MTG10.16 Q9FIS5,Q94EI5,A0A1P8BBR2,F4K556 Q9FIS5_ARATH,Q94EI5_ARATH,A0A1P8BBR2_ARATH,F4K556_ARATH Per1-like family protein,AT5g62130/mtg10_150 (Per1-like family protein) 32217,39503,29039,39881 Per1-like family protein,AT5g62130/mtg10_150 (Per1-like family protein) integral component of membrane [GO:0016021] locus:2174073; AT5G62130 Per1-like NA NA NA NA NA NA NA ENOG411E9XN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9XM IRT2 O81850 IRT2_ARATH Fe(2+) transport protein 2 (Fe(II) transport protein 2) (Iron-regulated transporter 2) FUNCTION: High-affinity iron transporter that mediates under iron-deficiency the iron uptake from the rhizosphere across the plasma membrane in the root epidermal layer. Could also be capable of transporting zinc ions. {ECO:0000269|PubMed:11389759}. ARA:AT4G19680-MONOMER;MetaCyc:AT4G19680-MONOMER; 37407 Fe(2+) transport protein 2 (Fe(II) transport protein 2) (Iron-regulated transporter 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385]; iron ion homeostasis [GO:0055072] TISSUE SPECIFICITY: Expressed in the external cell layers of the root subapical zone. locus:2133950; AT4G19680 ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411E9XJ AVT1G,AVT1F Q1PER9,F4IZW8 AVT1G_ARATH,AVT1F_ARATH Amino acid transporter AVT1G (AtAvt1G),Amino acid transporter AVT1F (AtAvt1F) R-ATH-425393;R-ATH-888590; 57068,57452 Amino acid transporter AVT1G (AtAvt1G),Amino acid transporter AVT1F (AtAvt1F) integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2083529;,locus:2083549; AT3G09330,AT3G09340 Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411E9XK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411E9XI CDG1 Q9LSE1 CDG1_ARATH Serine/threonine-protein kinase CDG1 (EC 2.7.11.1) (Protein CONSTITUTIVE DIFFERENTIAL GROWTH 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:15466232, ECO:0000269|PubMed:21855796}. FUNCTION: Serine/threonine-protein kinase involved in the positive regulation of brassinosteroid (BR) signaling and plant growth. Mediates BR signal transduction from BRI1 receptor kinase to BSU1 phosphatase. After activation by phosphorylation at Ser-234 by BRI1, CDG1 phosphorylates BSU1 at 'Ser-764' in the phosphatase domain, increasing the ability of BSU1 to inactivate the negative regulator of BR signaling ASK7/BIN2 by dephosphorylation at 'Tyr-200'. The full kinase activity of CDG1 is required for its biological function. {ECO:0000269|PubMed:21855796}. MISCELLANEOUS: The gain of function mutants cdg1-D (T-DNA tagging) show pleiotropic phenotype such as dwarfism, exaggerated leaf epinasty and twisted or spiral growth in hypocotyl, inflorescence stem, and petiole. {ECO:0000269|PubMed:15466232}. R-ATH-446652; 2.7.11.1 48507 Serine/threonine-protein kinase CDG1 (EC 2.7.11.1) (Protein CONSTITUTIVE DIFFERENTIAL GROWTH 1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; growth [GO:0040007]; positive regulation of brassinosteroid mediated signaling pathway [GO:1900459] TISSUE SPECIFICITY: Expressed at high levels in the stamen and pollen grains (PubMed:21855796). Expressed at a very low level in vegetative tissues (PubMed:15466232, PubMed:21855796). {ECO:0000269|PubMed:15466232, ECO:0000269|PubMed:21855796}. locus:2091980; AT3G26940 constitutive differential growth 1 NA NA NA NA NA NA NA ENOG411E9XF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E9XG MAP65-4 Q9LZY0 MA654_ARATH 65-kDa microtubule-associated protein 4 (AtMAP65-4) FUNCTION: Microtubule-associated protein involved in mitotic spindle formation. {ECO:0000269|PubMed:15557096}. 76939 65-kDa microtubule-associated protein 4 (AtMAP65-4) cytoplasm [GO:0005737]; microtubule [GO:0005874]; nucleus [GO:0005634]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cytokinesis [GO:0000910]; microtubule cytoskeleton organization [GO:0000226] AT3G60840 Microtubule associated protein (MAP65/ASE1 family) NA NA NA NA NA NA NA ENOG411E9XD ANK1 Q6AWW5,A0A1P8BFK5 Y5262_ARATH,A0A1P8BFK5_ARATH Ankyrin repeat-containing protein At5g02620,Ankyrin-like1 56923,59664 Ankyrin repeat-containing protein At5g02620,Ankyrin-like1 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2181768; AT5G02620 Ankyrin repeat NA NA NA NA NA NA NA ENOG411E9XE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLC domain NA NA NA NA NA NA NA ENOG411E9XB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411E9XC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411E9XA AKR4C11,AKR4C9 Q9M338,Q0PGJ6,A0A1I9LME6 AKRCB_ARATH,AKRC9_ARATH,A0A1I9LME6_ARATH Aldo-keto reductase family 4 member C11 (EC 1.1.1.-),NADPH-dependent aldo-keto reductase, chloroplastic (AtChlAKR) (EC 1.1.1.-) (Aldo-keto reductase family 4 member C9),NAD(P)-linked oxidoreductase superfamily protein FUNCTION: Oxidoreductase that may act on a broad range of substrates such as ketosteroids, aldehydes, ketones and sugars. {ECO:0000250}.,FUNCTION: Oxidoreductase acting on a broad range of substrates: reduces ketosteroids, aromatic aldehydes, ketones, sugars and other aliphatic aldehydes, and oxidizes hydroxysteroids (PubMed:19616008). Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes (PubMed:21169366). No activity on alpha,beta-unsaturated ketones (PubMed:21169366). Can use propionaldehyde, butyraldehyde, methylglyoxal, (E)-2-pentenal, (E)-2-hexenal, (Z)-3-hexenal and (E)-2-nonenal as substrates, propenal (acrolein), crotonaldehyde, but not 2-butanone, 3-buten-2-one or 1-penten-3-one (PubMed:21169366). May function as detoxifiying enzyme by reducing a range of toxic aldehydes and ketones produced during stress (PubMed:19616008). {ECO:0000269|PubMed:19616008, ECO:0000269|PubMed:21169366}. ARA:AT3G53880-MONOMER;,ARA:AT2G37770-MONOMER;MetaCyc:AT2G37770-MONOMER; R-ATH-156590;R-ATH-193144;R-ATH-193368;R-ATH-193775;R-ATH-193807;R-ATH-196108;R-ATH-2162123;R-ATH-5365859;R-ATH-5652227;R-ATH-5661270; 1.1.1.- 35036,35137,34793 Aldo-keto reductase family 4 member C11 (EC 1.1.1.-),NADPH-dependent aldo-keto reductase, chloroplastic (AtChlAKR) (EC 1.1.1.-) (Aldo-keto reductase family 4 member C9),NAD(P)-linked oxidoreductase superfamily protein cytosol [GO:0005829]; oxidoreductase activity [GO:0016491]; response to cadmium ion [GO:0046686],chloroplast [GO:0009507]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; aldo-keto reductase (NADP) activity [GO:0004033]; NADP+ binding [GO:0070401]; steroid dehydrogenase activity [GO:0016229]; oxidation-reduction process [GO:0055114]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to toxic substance [GO:0009636]; response to water deprivation [GO:0009414],oxidoreductase activity [GO:0016491] locus:2084505;,locus:2040646; AT3G53880,AT2G37770 Aldo keto reductase family protein NA NA NA NA NA NA NA ENOG411E9X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9X9 CCX2 Q9FKP2 CCX2_ARATH Cation/calcium exchanger 2 (Protein CATION EXCHANGER 8) FUNCTION: Membrane-localized H(+)-dependent K(+) and Na(+) transporter. {ECO:0000250}. R-ATH-425561;R-ATH-8949215; 61181 Cation/calcium exchanger 2 (Protein CATION EXCHANGER 8) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; potassium ion transport [GO:0006813]; sodium ion transport [GO:0006814] locus:2175996; AT5G17850 cation exchanger NA NA NA NA NA NA NA ENOG411E9X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411E9X7 F4ISH3 F4ISH3_ARATH tRNA-splicing ligase, putative (DUF239) 48632 tRNA-splicing ligase, putative (DUF239) integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2047640; AT2G19360 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E9X4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain NA NA NA NA NA NA NA ENOG411E9X5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposon protein Os06g0341066 protein A0A0P0WWJ4 A0A0P0WWJ4_ORYSJ Os06g0341066 OSNPB_060341066 ENOG411E9X2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - F-box domain containing protein F-box domain containing protein, expressed (Os12g0527500 protein) (cDNA clone:002-148-D08, full insert sequence),Os12g0526500 protein,Os12g0527600 protein,Os12g0527100 protein,Os12g0522000 protein,Os12g0526400 protein,Os12g0526800 protein Q2QPJ1,A0A0P0YAQ3,A0A0P0YAR0,A0A0N7KU47,A0A0P0YAQ4,A0A0P0YAX4,A0A0P0YAT8 Q2QPJ1_ORYSJ,A0A0P0YAQ3_ORYSJ,A0A0P0YAR0_ORYSJ,A0A0N7KU47_ORYSJ,A0A0P0YAQ4_ORYSJ,A0A0P0YAX4_ORYSJ,A0A0P0YAT8_ORYSJ LOC_Os12g34300 Os12g0527500 OSNPB_120527500,Os12g0526500 OSNPB_120526500,Os12g0527600 OSNPB_120527600,Os12g0527100 OSNPB_120527100,Os12g0522000 OSNPB_120522000,Os12g0526400 OSNPB_120526400,Os12g0526800 OSNPB_120526800 ENOG411E9X3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E9X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: coiled-coil domain containing 164 NA NA NA NA NA NA NA ENOG411E9X1 F3L24.11,BSK9 Q9SR39,A0A178VBH8,A0A1I9LLQ3 Q9SR39_ARATH,A0A178VBH8_ARATH,A0A1I9LLQ3_ARATH Kinase with tetratricopeptide repeat domain-containing protein (Uncharacterized protein F3L24.11),Kinase with tetratricopeptide repeat domain-containing protein 54331,56061,43055 Kinase with tetratricopeptide repeat domain-containing protein (Uncharacterized protein F3L24.11),Kinase with tetratricopeptide repeat domain-containing protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2083499; AT3G09240 STYKc NA NA NA NA NA NA NA ENOG411E6G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0584400 protein Q0DFK8 Q0DFK8_ORYSJ Os05g0584400 Os05g0584400 OSNPB_050584400 ENOG411E6GG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0798750 protein Q8LJ98 Q8LJ98_ORYSJ P0691E06.13 Os01g0798750 OSNPB_010798750 ENOG411E6GN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0601100 protein (cDNA clone:006-203-F06, full insert sequence) (cDNA clone:006-304-G09, full insert sequence) Q69XK9 Q69XK9_ORYSJ Os06g0601100 Os06g0601100 OsJ_21888 OSNPB_060601100 P0457B11.17 P0486H12.4 ENOG411EJDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411EAFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 Os08g0208400 protein (cDNA clone:J033095G06, full insert sequence),Os10g0141500 protein (Fragment) Q0J7A0,A0A0N7KRF2 Q0J7A0_ORYSJ,A0A0N7KRF2_ORYSJ Os08g0208400 Os08g0208400 OSNPB_080208400,Os10g0141500 OSNPB_100141500 ENOG411EAFB UGT90A2 Q9SY84 U90A2_ARATH UDP-glycosyltransferase 90A2 (EC 2.4.1.-) ARA:AT1G10400-MONOMER; 2.4.1.- 52954 UDP-glycosyltransferase 90A2 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2012813; AT1G10400 UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EAFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EAFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: zinc finger MYND-type containing 10 NA NA NA NA NA NA NA ENOG411EAFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EAFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinacetylesterase NA NA NA NA NA NA NA ENOG411EAFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAFQ CRK8 Q9FX86 CAMK8_ARATH CDPK-related kinase 8 (AtCRK8) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK8) FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 67973 CDPK-related kinase 8 (AtCRK8) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase CRK8) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; metal ion binding [GO:0046872]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2012232; AT1G49580 S_TKc NA NA NA NA NA NA NA ENOG411EAFS SYP42 Q9SWH4 SYP42_ARATH Syntaxin-42 (AtSYP42) (AtTLG2b) Complete male gametophyte defective-N. Raikhel-2001 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-6811438;R-ATH-6811440; 36432 Syntaxin-42 (AtSYP42) (AtTLG2b) integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; trans-Golgi network [GO:0005802]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886]; protein secretion [GO:0009306]; regulation of defense response to fungus [GO:1900150]; vacuolar transport [GO:0007034]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] locus:505006427; AT4G02195 SynN NA NA NA NA NA NA NA ENOG411EAF8 GSTU5,GSTU6 P46421,Q9ZW26 GSTU5_ARATH,GSTU6_ARATH Glutathione S-transferase U5 (AtGSTU5) (EC 2.5.1.18) (AtGSTU1) (GST class-tau member 5) (Glutathione S-transferase 103-1A),Glutathione S-transferase U6 (AtGSTU6) (EC 2.5.1.18) (GST class-tau member 6) (Glutathione S-transferase 24) FUNCTION: In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and benzyl isothiocyanate (BITC). May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:12090627}.,FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT2G29450-MONOMER;,ARA:AT2G29440-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 26000,25618 Glutathione S-transferase U5 (AtGSTU5) (EC 2.5.1.18) (AtGSTU1) (GST class-tau member 5) (Glutathione S-transferase 103-1A),Glutathione S-transferase U6 (AtGSTU6) (EC 2.5.1.18) (GST class-tau member 6) (Glutathione S-transferase 24) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to oxidative stress [GO:0006979]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2043032;,locus:2043057; AT2G29450,AT2G29440 arabidopsis thaliana glutathione s-transferase tau NA NA NA NA NA NA NA ENOG411EAF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411EKYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0809800 protein (Fragment) A0A0P0W531 A0A0P0W531_ORYSJ Os03g0809800 OSNPB_030809800 ENOG411EFA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF819) NA NA NA NA NA NA NA ENOG411EFA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0243200 protein (cDNA clone:002-132-E06, full insert sequence) Q6K2C1 Q6K2C1_ORYSJ Os09g0243200 Os09g0243200 OSJNBa0011D16.18 OSJNBa0038I09.30 OSNPB_090243200 ENOG411EFA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EFA4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIFY NA NA NA NA NA NA NA ENOG411EFA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EFA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cold acclimation protein WCOR413 NA NA NA NA NA NA NA ENOG411EFAA EFL2 Q94BS8 EF4L2_ARATH Protein ELF4-LIKE 2 FUNCTION: Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. {ECO:0000250}. 13409 Protein ELF4-LIKE 2 nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; photoperiodism [GO:0009648]; positive regulation of circadian rhythm [GO:0042753]; rhythmic process [GO:0048511] locus:2030165; AT1G72630 Protein of unknown function (DUF1313) NA NA NA NA NA NA NA ENOG411EFAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFAD ATA20 Q9LD84,F4IYR6 Q9LD84_ARATH,F4IYR6_ARATH ATA20 protein (Anther 20) (Anther development protein ATA20) (Anther development protein, ATA20),Anther 20 42819,40696 ATA20 protein (Anther 20) (Anther development protein ATA20) (Anther development protein, ATA20),Anther 20 plant-type cell wall [GO:0009505] locus:2090191; AT3G15400 NA NA NA NA NA NA NA NA ENOG411EFAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EFAM Q8L864 Q8L864_ARATH Uncharacterized protein At4g21930 20378 Uncharacterized protein At4g21930 locus:2141687; AT4G21930 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411EFAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFAY SPH30,SPH25,SPH15 Q1G373,Q9FIV3,Q9FLY6,Q9SYC6,Q9SYC7,Q3ECS8,A0A178VNT0,F4IV52 SPH30_ARATH,SPH25_ARATH,SPH15_ARATH,Q9SYC6_ARATH,Q9SYC7_ARATH,Q3ECS8_ARATH,A0A178VNT0_ARATH,F4IV52_ARATH S-protein homolog 30,S-protein homolog 25,S-protein homolog 15,F11M15.10 protein (Plant self-incompatibility protein S1 family),At1g51250 (F11M15.11 protein) (Plant self-incompatibility protein S1 family),Plant self-incompatibility protein S1 family,Plant self-incompatibility protein S1 family protein 15094,15846,15590,16704,16618,15018,14927,17796 S-protein homolog 30,S-protein homolog 25,S-protein homolog 15,F11M15.10 protein (Plant self-incompatibility protein S1 family),At1g51250 (F11M15.11 protein) (Plant self-incompatibility protein S1 family),Plant self-incompatibility protein S1 family,Plant self-incompatibility protein S1 family protein extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:4515103661;,locus:2008316;,locus:2008221;,locus:2008301;,locus:6530298175; AT5G37147,AT5G36985,AT5G39493,AT1G51240,AT1G51250,AT1G51230,AT2G04115 Has 16 Blast hits to 16 proteins in 1 species Archae - 0 NA NA NA NA NA NA NA ENOG411EKMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EC0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EC0I Q8L7I4,A0A1P8AWE5 P2C17_ARATH,A0A1P8AWE5_ARATH Probable protein phosphatase 2C 17 (AtPP2C17) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 30854,26161 Probable protein phosphatase 2C 17 (AtPP2C17) (EC 3.1.3.16),Protein phosphatase 2C family protein plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2194734; AT1G78200 PP2C_SIG NA NA NA NA NA NA NA ENOG411EKRZ IPK2b Q9FLT2 IPMKB_ARATH Inositol polyphosphate multikinase beta (EC 2.7.1.140) (EC 2.7.1.151) (Inositol polyphosphate 6-/3-/5-kinase beta) (AtIpk2-beta) (AtIpk2beta) DISRUPTION PHENOTYPE: Loss-of-function mutant atIpk2beta-1 (T-DNA insertion) is fully complemented by AtIPK2alpha in tissue but not in seeds, leading to the generation of phytate-free seeds. {ECO:0000269|PubMed:16107538}. FUNCTION: Inositol phosphate kinase with a broad substrate specificity. Phosphorylates inositol 1,4,5-trisphosphate (Ins(1,4,5)P3), inositol 1,4,5,6-tetrakisphosphate (Ins(1,4,5,6)P4), inositol 1,3,4,5-tetrakisphosphate (Ins(1,3,4,5)P4), inositol 1,3,4,6-tetrakisphosphate (Ins(1,3,4,6)P4) and inositol 1,2,3,4,6-pentakisphosphate (Ins(1,2,3,4,6)P5) but not inositol 1,4-bisphosphate (Ins(1,4)P2), inositol 1,3,4-trisphosphate (Ins(1,3,4)P3), inositol 1,2,6-trisphosphate (Ins(1,2,6)P3), inositol 3,4,5,6-tetrakisphosphate (Ins(3,4,5,6)P4), inositol 1,3,4,5,6-pentakisphosphate (Ins(1,3,4,5,6)P5), inositol 1,2,4,5,6-pentakisphosphate (Ins(1,2,4,5,6)P5) or inositol hexakisphosphate (InsP6). Involved in the auxin signaling pathway. Regulates axillary shoot branching and is required for phytate synthesis in seeds. {ECO:0000269|PubMed:12226109, ECO:0000269|PubMed:16107538, ECO:0000269|PubMed:17434984}. MISCELLANEOUS: Does not bind calmodulin. ARA:AT5G61760-MONOMER;MetaCyc:AT5G61760-MONOMER; R-ATH-1855167;R-ATH-1855191; 2.7.1.151; 2.7.1.140; 2.7.1.151 33487 Inositol polyphosphate multikinase beta (EC 2.7.1.140) (EC 2.7.1.151) (Inositol polyphosphate 6-/3-/5-kinase beta) (AtIpk2-beta) (AtIpk2beta) nucleus [GO:0005634]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; inositol tetrakisphosphate 3-kinase activity [GO:0000824]; inositol tetrakisphosphate 5-kinase activity [GO:0047326]; inositol tetrakisphosphate kinase activity [GO:0051765]; inositol trisphosphate kinase activity [GO:0051766]; inositol-1,3,4-trisphosphate 6-kinase activity [GO:0052725]; inositol-1,4,5-trisphosphate 3-kinase activity [GO:0008440]; inositol-1,4,5-trisphosphate 6-kinase activity [GO:0000823]; myo-inositol-1,2,3,4,6-heptakisphosphate 5-kinase activity [GO:0102732]; embryo development ending in seed dormancy [GO:0009793]; myo-inositol hexakisphosphate biosynthetic process [GO:0010264]; pollen development [GO:0009555]; pollen tube guidance [GO:0010183]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed in mature pollen, but not in immature pollen grains. {ECO:0000269|PubMed:12566584}. TISSUE SPECIFICITY: Expressed in leaves, stems, roots, siliques and flowers. Detected in vascular strands, stigma cells, the abscission zones of fully elongated siliques, the root central cylinder and the root tip. {ECO:0000269|PubMed:12226109, ECO:0000269|PubMed:12566584}. locus:2159203; AT5G61760 inositol polyphosphate multikinase NA NA NA NA NA NA NA ENOG411EKRX IPK2a Q9LY23 IPMKA_ARATH Inositol polyphosphate multikinase alpha (EC 2.7.1.140) (EC 2.7.1.151) (Inositol polyphosphate 6-/3-/5-kinase alpha) (AtIpk2-alpha) (AtIpk2alpha) FUNCTION: Inositol phosphate kinase with a broad substrate specificity. Phosphorylates inositol 1,4,5-trisphosphate (Ins(1,4,5)P3), inositol 1,4,5,6-tetrakisphosphate (Ins(1,4,5,6)P4), inositol 1,3,4,5-tetrakisphosphate (Ins(1,3,4,5)P4), inositol 1,3,4,6-tetrakisphosphate (Ins(1,3,4,6)P4) and inositol 1,2,3,4,6-pentakisphosphate (Ins(1,2,3,4,6)P5) but not inositol 1,4-bisphosphate (Ins(1,4)P2), inositol 1,3,4-trisphosphate (Ins(1,3,4)P3), inositol 1,2,6-trisphosphate (Ins(1,2,6)P3), inositol 3,4,5,6-tetrakisphosphate (Ins(3,4,5,6)P4), inositol 1,3,4,5,6-pentakisphosphate (Ins(1,3,4,5,6)P5), inositol 1,2,4,5,6-pentakisphosphate (Ins(1,2,4,5,6)P5) or inositol hexakisphosphate (InsP6). Regulates pollen and root development probably through the regulation of InsP3-mediated calcium accumulation. {ECO:0000269|PubMed:12226109, ECO:0000269|PubMed:15618435}. MISCELLANEOUS: Does not bind calmodulin. {ECO:0000250}. ARA:GQT-857-MONOMER;MetaCyc:AT5G07370-MONOMER; R-ATH-1855167;R-ATH-1855191; 2.7.1.151; 2.7.1.140; 2.7.1.151 31946 Inositol polyphosphate multikinase alpha (EC 2.7.1.140) (EC 2.7.1.151) (Inositol polyphosphate 6-/3-/5-kinase alpha) (AtIpk2-alpha) (AtIpk2alpha) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; inositol tetrakisphosphate 3-kinase activity [GO:0000824]; inositol tetrakisphosphate 5-kinase activity [GO:0047326]; inositol-1,4,5-trisphosphate 3-kinase activity [GO:0008440]; inositol-1,4,5-trisphosphate 6-kinase activity [GO:0000823]; myo-inositol-1,2,3,4,6-heptakisphosphate 5-kinase activity [GO:0102732]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; pollen tube guidance [GO:0010183] DEVELOPMENTAL STAGE: Expression persisted in the stigmatic tissue after fertilization and in siliques during seed maturation. {ECO:0000269|PubMed:15618435}. TISSUE SPECIFICITY: Detected in leaves, stems, roots, siliques and flowers. Highly expressed in root tissues, anthers, the stigma, pollen grains and growing pollen tubes. {ECO:0000269|PubMed:12226109, ECO:0000269|PubMed:15618435}. locus:2183389; AT5G07370 Inositol polyphosphate NA NA NA NA NA NA NA ENOG411EKRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inositol polyphosphate kinase Inositol polyphosphate multikinase IPK2 (OsIPK2) (EC 2.7.1.140) (EC 2.7.1.151) (Inositol polyphosphate 6-/3-/5-kinase) Q6H545 IPK2_ORYSJ IPK2 Os02g0523800 LOC_Os02g32370 OsJ_06957 OSJNBa0047A17.37 P0415B12.9 FUNCTION: Inositol phosphate kinase with a broad substrate specificity. Phosphorylates inositol 1,4,5-trisphosphate (Ins(1,4,5)P3), inositol 1,4,5,6-tetrakisphosphate (Ins(1,4,5,6)P4), inositol 1,3,4,5-tetrakisphosphate (Ins(1,3,4,5)P4), inositol 1,3,4,6-tetrakisphosphate (Ins(1,3,4,6)P4) and inositol 1,2,3,4,6-pentakisphosphate (Ins(1,2,3,4,6)P5) but not inositol 1,4-bisphosphate (Ins(1,4)P2), inositol 1,3,4-trisphosphate (Ins(1,3,4)P3), inositol 1,2,6-trisphosphate (Ins(1,2,6)P3), inositol 3,4,5,6-tetrakisphosphate (Ins(3,4,5,6)P4), inositol 1,3,4,5,6-pentakisphosphate (Ins(1,3,4,5,6)P5), inositol 1,2,4,5,6-pentakisphosphate (Ins(1,2,4,5,6)P5) or inositol hexakisphosphate (InsP6). Regulates pollen and root development probably through the regulation of InsP3-mediated calcium accumulation. {ECO:0000250|UniProtKB:Q9LY23}. ENOG411EKRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKRW MENB Q8GYN9 MENB_ARATH 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal (DHNS) (EC 4.1.3.36) (Enoyl-CoA hydratase/isomerase D) (ECHID) (Naphthoate synthase) FUNCTION: Involved in the biosynthesis of phylloquinone (vitamin K1). Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) (By similarity). {ECO:0000250}. 4.1.3.36 37056 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal (DHNS) (EC 4.1.3.36) (Enoyl-CoA hydratase/isomerase D) (ECHID) (Naphthoate synthase) peroxisome [GO:0005777]; 1,4-dihydroxy-2-naphthoyl-CoA synthase activity [GO:0008935]; isomerase activity [GO:0016853]; menaquinone biosynthetic process [GO:0009234]; phylloquinone biosynthetic process [GO:0042372] locus:2036626; AT1G60550 synthase Os01g0662700 protein (Putative naphthoate synthase menB) Q8LR33 Q8LR33_ORYSJ Os01g0662700 OsJ_02907 OSNPB_010662700 P0671D01.29 ENOG411EKRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MoCF_biosynth NA NA NA NA NA NA NA ENOG411EKRU Q93WI0 STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12, chloroplastic (Sulfurtransferase 12) (AtStr12) 32980 Rhodanese-like/PpiC domain-containing protein 12, chloroplastic (Sulfurtransferase 12) (AtStr12) chloroplast [GO:0009507]; isomerase activity [GO:0016853]; response to cytokinin [GO:0009735] locus:2150235; AT5G19370 PPIC-type PPIASE domain NA NA NA NA NA NA NA ENOG411EKRR ABIL1 Q8S8M5,F4II55,B3H5V3 ABIL1_ARATH,F4II55_ARATH,B3H5V3_ARATH Protein ABIL1 (Abl interactor-like protein 1) (AtABIL1),ABI-1-like 1 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. 33196,31902,36355 Protein ABIL1 (Abl interactor-like protein 1) (AtABIL1),ABI-1-like 1 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856],SCAR complex [GO:0031209]; actin nucleation [GO:0045010]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed in seedlings, roots, hypocotyls, cotyledons, leaves, stems, and flowers. {ECO:0000269|PubMed:15659634}. locus:505006318; AT2G46225 Inherit from euNOG: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2 3 complex (By similarity) NA NA NA NA NA NA NA ENOG411EKRS O82347 O82347_ARATH At2g46220/T3F17.13 (DUF2358 family protein (DUF2358)) (Expressed protein) 28106 At2g46220/T3F17.13 (DUF2358 family protein (DUF2358)) (Expressed protein) locus:2062912; AT2G46220 Uncharacterized conserved protein (DUF2358) Os05g0215600 protein (cDNA clone:J013073I22, full insert sequence),Os05g0215600 protein (cDNA clone:J013073A18, full insert sequence),Os01g0221500 protein Q0DJX6,B7EPF9,Q0JPI2 Q0DJX6_ORYSJ,B7EPF9_ORYSJ,Q0JPI2_ORYSJ Os05g0215600 Os05g0215600 OSNPB_050215600,Os05g0215600 OSNPB_050215600,Os01g0221500 Os01g0221500 OSNPB_010221500 ENOG411EKRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Probable protein ABIL1 (Abl interactor-like protein 1) Q9AXA6 ABIL1_ORYSJ Os01g0622700 LOC_Os01g43420 P0501G01.11 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411EKRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2 3 complex (By similarity) Probable protein ABIL4 (Abl interactor-like protein 4) Q6I588 ABIL4_ORYSJ Os05g0585400 LOC_Os05g50800 OsJ_19708 OSJNBa0009C07.8 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411EKRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA factor IIa large NA NA NA NA NA NA NA ENOG411EKRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os05g0292200 protein (cDNA clone:J013022M09, full insert sequence) Q0DJF8 Q0DJF8_ORYSJ Os05g0292200 Os05g0292200 OSNPB_050292200 ENOG411EKRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA stAR-related lipid transfer protein 7 mitochondrial-like NA NA NA NA NA NA NA ENOG411EKRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0468400 protein (Putative membrane related protein) Q6K8I5 Q6K8I5_ORYSJ Os02g0468400 Os02g0468400 OJ1057_F01.5 OSNPB_020468400 ENOG411EKRD CP5 Q9XIR9 Q9XIR9_ARATH Polyketide cyclase/dehydrase and lipid transport superfamily protein (Putative membrane related protein) 43758 Polyketide cyclase/dehydrase and lipid transport superfamily protein (Putative membrane related protein) integral component of membrane [GO:0016021]; vacuole [GO:0005773]; lipid binding [GO:0008289] locus:2010836; AT1G64720 NA OSJNBa0020P07.12 protein (Os04g0119500 protein) (cDNA clone:001-041-H01, full insert sequence) (cDNA clone:J013001H07, full insert sequence) Q7XTJ2 Q7XTJ2_ORYSJ Os04g0119500 Os04g0119500 OsJ_13592 OSJNBa0020P07.12 OSNPB_040119500 ENOG411EKRB Q681Y3 Y1099_ARATH Putative transferase At1g60990, chloroplastic (EC 2.1.-.-) (Iron-sulfur cluster assembly factor homolog COG0354) FUNCTION: Folate-dependent protein involved in Fe/S cluster biogenesis. Functionally complements an E.coli mutant defective in ygfZ. {ECO:0000269|PubMed:20489182, ECO:0000269|PubMed:21984653}. 2.1.-.- 47009 Putative transferase At1g60990, chloroplastic (EC 2.1.-.-) (Iron-sulfur cluster assembly factor homolog COG0354) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; oxidoreductase activity [GO:0016491]; transferase activity [GO:0016740]; iron-sulfur cluster assembly [GO:0016226] TISSUE SPECIFICITY: Expressed in young leaves (at protein level). {ECO:0000269|PubMed:21984653}. locus:2206051; AT1G60990 Aminomethyltransferase folate-binding domain NA NA NA NA NA NA NA ENOG411EKRA MIND1 Q9MBA2 MIND1_ARATH Putative septum site-determining protein minD homolog, chloroplastic (AtMinD1) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11) (Septum site-determining protein MinD1) DISRUPTION PHENOTYPE: Heterogeneous population of chloroplasts in mesophyll cells and petals, with normal and larger plastids, due to reduced chloroplast divisions and asymmetrically constricted chloroplasts. Contains highly elongated and multiple-arrayed chloroplasts in developing green tissues. Formation of some FtsZ rings that fail to initiate or progress the membrane constriction of developing chloroplasts. {ECO:0000269|PubMed:18204083}. FUNCTION: Calcium-dependent ATPase required for the correct placement of the plastid division site. Inhibits FtsZ filament and ring formation in the plastid. Mediates inhibition of plastid division. In cooperation with MINE1, prevents FtsZ ring formation anywhere outside of the mid-plastids. {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:10801439, ECO:0000269|PubMed:11148270, ECO:0000269|PubMed:11800381, ECO:0000269|PubMed:12897262, ECO:0000269|PubMed:15126639, ECO:0000269|PubMed:16014621, ECO:0000269|PubMed:18204083, ECO:0000269|PubMed:19457228, ECO:0000269|PubMed:19584524}. 35690 Putative septum site-determining protein minD homolog, chloroplastic (AtMinD1) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11) (Septum site-determining protein MinD1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; calcium-dependent ATPase activity [GO:0030899]; identical protein binding [GO:0042802]; protein homodimerization activity [GO:0042803]; chloroplast fission [GO:0010020] locus:2178717; AT5G24020 site-determining protein Site-determining protein Q9LWY6 Q9LWY6_ORYSJ Os06g0106000 Os06g0106000 OSNPB_060106000 P0644B06.32 ENOG411EC0K MKP11.14 Q9FFI9 Q9FFI9_ARATH Pectin lyase-like superfamily protein (Polygalacturonase-like protein) ARA:AT5G17200-MONOMER; 45234 Pectin lyase-like superfamily protein (Polygalacturonase-like protein) extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2167185; AT5G17200 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411EKR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os09g0267500 protein (Putative NEDD1 protein),Os09g0267500 protein Q6H4U2,Q6H4U1 Q6H4U2_ORYSJ,Q6H4U1_ORYSJ B1008E06.12-1 Os09g0267500 OSNPB_090267500,B1008E06.12-2 Os09g0267500 OSNPB_090267500 ENOG411EKR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) Phytanoyl-CoA dioxygenase 2 (EC 1.14.11.18) (Phytanoyl-CoA 2-hydroxylase),Phytanoyl-CoA dioxygenase 1 (EC 1.14.11.18) (Phytanoyl-CoA 2-hydroxylase),Os03g0708100 protein Q65WW7,Q10E49,A0A0P0W1Z2 PAHX2_ORYSJ,PAHX1_ORYSJ,A0A0P0W1Z2_ORYSJ Os05g0473900 OsJ_18897 P0486C01.8,Os03g0708100 LOC_Os03g50040 OsJ_12289 OSJNBb0022E02.8,Os03g0708100 OSNPB_030708100 FUNCTION: Converts phytanoyl-CoA to 2-hydroxyphytanoyl-CoA. {ECO:0000250}. ENOG411EKR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0818600 protein (Fragment) A0A0P0V9R0,A0A0P0V9U1 A0A0P0V9R0_ORYSJ,A0A0P0V9U1_ORYSJ Os01g0818600 OSNPB_010818600 ENOG411EKR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor protein kinase CLAVATA1 OSJNBb0022F23.6 protein (Os04g0472500 protein) Q7XR24 Q7XR24_ORYSJ OSJNBb0022F23.6 Os04g0472500 OSNPB_040472500 ENOG411EKR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: UPF0225 protein NA NA NA NA NA NA NA ENOG411EKR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0407200 protein (cDNA clone:J013111J10, full insert sequence) (cDNA clone:J023016N14, full insert sequence) (cDNA clone:J023034D12, full insert sequence),Os08g0407200 protein Q6Z9X3,A0A0P0XFT2 Q6Z9X3_ORYSJ,A0A0P0XFT2_ORYSJ P0453D01.16-1 Os08g0407200 OsJ_27258 OSNPB_080407200,Os08g0407200 OSNPB_080407200 ENOG411EKR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MORN NA NA NA NA NA NA NA ENOG411EKCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 family protein, expressed (Os03g0223100 protein) (cDNA clone:001-100-E07, full insert sequence) (cDNA clone:001-208-D01, full insert sequence) Q10PS7 Q10PS7_ORYSJ LOC_Os03g12260 Os03g0223100 OSNPB_030223100 ENOG411EDN4 MYB39 Q8GWP0 MYB39_ARATH Transcription factor MYB39 (Myb-related protein 39) (AtMYB39) 40023 Transcription factor MYB39 (Myb-related protein 39) (AtMYB39) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:505006490; AT4G17785 myb domain protein 39 NA NA NA NA NA NA NA ENOG411EDN7 Q9FFG9,Q9SJ06 FB282_ARATH,FB115_ARATH Putative F-box protein At5g44220,F-box protein At2g21930 34069,45181 Putative F-box protein At5g44220,F-box protein At2g21930 locus:2167583; AT5G44220,AT2G21930 F-box associated domain NA NA NA NA NA NA NA ENOG411EDN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CotH protein NA NA NA NA NA NA NA ENOG411EDNY PP2A3,PP2A4,PP2A-3 Q07100,P48578,F4IN36 PP2A3_ARATH,PP2A4_ARATH,F4IN36_ARATH Serine/threonine-protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 3),Serine/threonine-protein phosphatase PP2A-4 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 4),Serine/threonine-protein phosphatase (EC 3.1.3.16) FUNCTION: Functions redundantly with PP2A4, and is involved in establishing auxin gradients, apical-basal axis of polarity and root and shoot apical meristem during embryogenesis. May dephosphorylate PIN1 and regulate its subcellular distribution for polar auxin transport (PubMed:23167545). Involved in the regulation of formative cell division in roots by dephosphorylating ACR4 protein kinase (PubMed:26792519). {ECO:0000269|PubMed:23167545, ECO:0000269|PubMed:26792519}.,FUNCTION: Functions redundantly with PP2A3, and is involved in establishing auxin gradients, apical-basal axis of polarity and root and shoot apical meristem during embryogenesis. May dephosphorylate PIN1 and regulate its subcellular distribution for polar auxin transport (PubMed:23167545). The holoenzyme composed of PP2AA1, PP2A4 and B'ZETA or B'ETA acts as negative regulator of plant innate immunity by controlling BAK1 phosphorylation state and activation in surface-localized immune receptor complexes (PubMed:25085430). {ECO:0000269|PubMed:23167545, ECO:0000269|PubMed:25085430}. 3.1.3.16 35833,35767,30654 Serine/threonine-protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 3),Serine/threonine-protein phosphatase PP2A-4 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 4),Serine/threonine-protein phosphatase (EC 3.1.3.16) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; primary root development [GO:0080022]; root development [GO:0048364]; stem cell differentiation [GO:0048863],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; protein phosphatase type 2A complex [GO:0000159]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; defense response [GO:0006952]; protein dephosphorylation [GO:0006470],phosphoprotein phosphatase activity [GO:0004721] locus:2041579;,locus:2076451; AT2G42500,AT3G58500 PP2Ac Serine/threonine-protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) Q10BT5 PP2A2_ORYSJ PP2A2 Os03g0805300 LOC_Os03g59060 OsJ_012457 OSJNBb0015I02.15 ENOG411EDNA NPF5.13,NPF5.14 Q0WSZ6,Q8VZE2 PTR23_ARATH,PTR22_ARATH Protein NRT1/ PTR FAMILY 5.13 (AtNPF5.13) (Nitrate transporter 1.16),Protein NRT1/ PTR FAMILY 5.14 (AtNPF5.14) (Nitrate transporter 1.15) R-ATH-427975;R-ATH-6798695; 62262,61924 Protein NRT1/ PTR FAMILY 5.13 (AtNPF5.13) (Nitrate transporter 1.16),Protein NRT1/ PTR FAMILY 5.14 (AtNPF5.14) (Nitrate transporter 1.15) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. Detected in stems and leaves. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:17481610}. locus:4515102750;,locus:2030326; AT1G72125,AT1G72120 oligopeptide transport NA NA NA NA NA NA NA ENOG411EDND Q84JN6,F4HUN6 FB11_ARATH,F4HUN6_ARATH F-box protein At1g20360,F-box and associated interaction domains-containing protein 34332,44455 F-box protein At1g20360,F-box and associated interaction domains-containing protein locus:2012908;,locus:6530298144; AT1G20360,AT1G20735 FBOX NA NA NA NA NA NA NA ENOG411EDNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411EDNF Q3EBM5 ASPR1_ARATH Probable aspartic protease At2g35615 (EC 3.4.-.-) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19748917}. 3.4.-.- 48089 Probable aspartic protease At2g35615 (EC 3.4.-.-) extracellular region [GO:0005576]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:504955954; AT2G35615 aspartyl protease family protein NA NA NA NA NA NA NA ENOG411EDNK IP5P1,IP5PI Q84MA2,A0A1P8AUF0,A0A1P8AUF3,F4HT46 IP5P1_ARATH,A0A1P8AUF0_ARATH,A0A1P8AUF3_ARATH,F4HT46_ARATH Type I inositol polyphosphate 5-phosphatase 1 (At5PTase1) (EC 3.1.3.56),Inositol polyphosphate 5-phosphatase I DISRUPTION PHENOTYPE: No visible phenotype. Slightly reduced production of reactive oxygen species (ROS) (PubMed:23658066). Alterations in germination and in early seedling growth. Enhanced sensibility to abscisic acid (ABA) with elevated levels of Ins(1,4,5)P3 (PubMed:17237190). {ECO:0000269|PubMed:17237190, ECO:0000269|PubMed:23658066}. Increased length of hypocotyls in dark grown seedlings. Seeds that have been stratified at 4C for 3 days germinate faster. Increased sensitivity to ABA. Long hypocotyl in the dark; Sensitive to ABA-G. Gillaspy-2007 FUNCTION: Has phosphatase activity toward Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but not toward Ins(1,4)P2, Ins(1)P (PubMed:11402208). Seems to be involved in the abscisic acid (ABA) signaling pathway (PubMed:12805629). Could also be able to hydrolyze PtdIns(4,5)P2 and PtdIns(3,4,5)P3 (PubMed:23658066). {ECO:0000269|PubMed:11402208, ECO:0000269|PubMed:12805629, ECO:0000269|PubMed:23658066}. ARA:AT1G34120-MONOMER;MetaCyc:AT1G34120-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.56; 3.1.3.56 67783,54503,50174,67627 Type I inositol polyphosphate 5-phosphatase 1 (At5PTase1) (EC 3.1.3.56),Inositol polyphosphate 5-phosphatase I inositol trisphosphate phosphatase activity [GO:0046030]; inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity [GO:0052659]; inositol-1,4,5-trisphosphate 5-phosphatase activity [GO:0052658]; inositol-polyphosphate 5-phosphatase activity [GO:0004445]; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; abscisic acid-activated signaling pathway [GO:0009738]; inositol phosphate dephosphorylation [GO:0046855]; inositol trisphosphate metabolic process [GO:0032957]; phosphatidylinositol dephosphorylation [GO:0046856]; seed germination [GO:0009845]; seedling development [GO:0090351],hydrolase activity [GO:0016787]; phosphatidylinositol dephosphorylation [GO:0046856] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:11402208, ECO:0000269|PubMed:17237190}. locus:2009061; AT1G34120 inositol polyphosphate 5-phosphatase I NA NA NA NA NA NA NA ENOG411DPN6 NADP-ME4,NADP-ME1 Q9CA83,O82191,A0A1P8B1I3 MAOP4_ARATH,MAOP1_ARATH,A0A1P8B1I3_ARATH NADP-dependent malic enzyme 4, chloroplastic (AtNADP-ME4) (NADP-malic enzyme 4) (EC 1.1.1.40),NADP-dependent malic enzyme 1 (AtNADP-ME1) (NADP-malic enzyme 1) (EC 1.1.1.40),Malic enzyme FUNCTION: The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants (By similarity). {ECO:0000250}. PATHWAY: Photosynthesis; C3 acid pathway. ARA:AT1G79750-MONOMER;,ARA:AT2G19900-MONOMER; Carbon fixation in photosynthetic organisms (00710),Microbial metabolism in diverse environments (01120),Pyruvate metabolism (00620),Metabolic pathways (01100) 1.1.1.40 71161,64279,52925 NADP-dependent malic enzyme 4, chloroplastic (AtNADP-ME4) (NADP-malic enzyme 4) (EC 1.1.1.40),NADP-dependent malic enzyme 1 (AtNADP-ME1) (NADP-malic enzyme 1) (EC 1.1.1.40),Malic enzyme chloroplast [GO:0009507]; cobalt ion binding [GO:0050897]; malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; malate dehydrogenase (decarboxylating) (NADP+) activity [GO:0004473]; NAD binding [GO:0051287]; oxaloacetate decarboxylase activity [GO:0008948]; protein homodimerization activity [GO:0042803]; zinc ion binding [GO:0008270]; fatty acid biosynthetic process [GO:0006633]; malate metabolic process [GO:0006108]; protein homotetramerization [GO:0051289]; pyruvate metabolic process [GO:0006090],chloroplast [GO:0009507]; cytosol [GO:0005829]; malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; malate dehydrogenase (decarboxylating) (NADP+) activity [GO:0004473]; metal ion binding [GO:0046872]; NAD binding [GO:0051287]; oxaloacetate decarboxylase activity [GO:0008948]; malate metabolic process [GO:0006108]; protein homooligomerization [GO:0051260]; pyruvate metabolic process [GO:0006090],malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; metal ion binding [GO:0046872]; NAD binding [GO:0051287] DEVELOPMENTAL STAGE: During embryogenesis, present in the endosperm and the embryo at all developmental stages, including the seed attachment point and the integuments. Also detected in siliques. During germination, first confined to the radicle to later approaches the meristematic region. Finally present in the whole root. Expressed in cotyledons and primary leaves. In opened flowers, present in sepals, stigma, filaments, and pollen. {ECO:0000269|PubMed:16113210}.,DEVELOPMENTAL STAGE: During embryogenesis, present only in the embryo from the torpedo stage onward. During germination, first restricted to the radicle to later become more pronounced in the root tip. Expressed in hypocotyl and cotyledons 5 days after imbibition. {ECO:0000269|PubMed:16113210}. TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and roots, mainly in vascular system. In roots, present in the stele, including the vascular tissue and the pericycle, mainly at emerging lateral roots and at root tips. {ECO:0000269|PubMed:16113210}.,TISSUE SPECIFICITY: Specifically expressed in roots (only in steles of secondary roots). {ECO:0000269|PubMed:16113210}. locus:2017854;,locus:2052045; AT1G79750,AT2G19900 malic enzyme NADP-dependent malic enzyme, chloroplastic (NADP-ME) (EC 1.1.1.40),Malic enzyme (Fragment),Os02g0665000 protein (cDNA clone:J013135D10, full insert sequence),Os02g0665000 protein,Malic enzyme P43279,Q0JJQ7,A3A9W6,Q0DYW1,Q6T5D1,A0A0P0V7L8,A0A0P0V7M3,A0A0P0UZ30 MAOC_ORYSJ,Q0JJQ7_ORYSJ,A3A9W6_ORYSJ,Q0DYW1_ORYSJ,Q6T5D1_ORYSJ,A0A0P0V7L8_ORYSJ,A0A0P0V7M3_ORYSJ,A0A0P0UZ30_ORYSJ ME6 Os01g0188400 LOC_Os01g09320 OsJ_00690 P0512G09.20 P0695A04.29,Os01g0723400 Os01g0723400 OSNPB_010723400,Os02g0665000 OsJ_07844 OSNPB_020665000,Os02g0665000 Os02g0665000 OSNPB_020665000,Os05g0186300 Os05g0186300 OSNPB_050186300,Os01g0723400 OSNPB_010723400,Os01g0188400 OSNPB_010188400 FUNCTION: The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. ENOG411DPN7 STR10 Q9SR92 STR10_ARATH Rhodanese-like domain-containing protein 10 (Sulfurtransferase 10) (AtStr10) 23780 Rhodanese-like domain-containing protein 10 (Sulfurtransferase 10) (AtStr10) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021]; response to cold [GO:0009409] locus:2097628; AT3G08920 Rhodanese-like domain Os03g0289400 protein (Rhodanese-like family protein, putative) Q10MY4 Q10MY4_ORYSJ Os03g0289400 LOC_Os03g18020 OSNPB_030289400 ENOG411DPN4 MEE15 A0A1P8AXI4,A0A1P8AXG7,A0A1P8AXB4,F4IMD9,A0A1P8B0L0,A0A1P8AXL3,A0A1P8B0K3,A0A1P8AXG6,A0A1P8BEX6,A0A1P8AXB0,A0A1P8B0J8,A0A1P8AX77,A0A1P8AXA8,A0A1P8B0Q4,A0A1P8AX75,A0A1P8AXC3,F4K1G9,F4IMD6,F4IMD7,F4IMD8 A0A1P8AXI4_ARATH,A0A1P8AXG7_ARATH,A0A1P8AXB4_ARATH,F4IMD9_ARATH,A0A1P8B0L0_ARATH,A0A1P8AXL3_ARATH,A0A1P8B0K3_ARATH,A0A1P8AXG6_ARATH,A0A1P8BEX6_ARATH,A0A1P8AXB0_ARATH,A0A1P8B0J8_ARATH,A0A1P8AX77_ARATH,A0A1P8AXA8_ARATH,A0A1P8B0Q4_ARATH,A0A1P8AX75_ARATH,A0A1P8AXC3_ARATH,F4K1G9_ARATH,F4IMD6_ARATH,F4IMD7_ARATH,F4IMD8_ARATH Major facilitator superfamily protein 44158,44505,44525,49845,52066,46558,37496,48838,43702,42111,49700,48941,38397,52419,41510,50393,47605,42442,50163,46278 Major facilitator superfamily protein integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; embryo development ending in seed dormancy [GO:0009793]; transmembrane transport [GO:0055085] locus:2039450;,locus:2157592;,locus:2039430;,locus:2039440; AT2G16990,AT5G42210,AT2G16970,AT2G16980 tetracycline transporter Os05g0307100 protein (Fragment) A0A0P0WKF0 A0A0P0WKF0_ORYSJ Os05g0307100 OSNPB_050307100 ENOG411DPN5 SYN3 Q9FQ19,Q9M0V9 SCC13_ARATH,Q9M0V9_ARATH Sister chromatid cohesion 1 protein 3 (SCC1 homolog 3) (AtRAD21-2),Uncharacterized protein AT4g05360 (Zinc knuckle (CCHC-type) family protein) No visible phenotype under typical growth conditions.,Plants are gametophyte lethal. Both female gametophytes and pollen are affected.,Development of the female gametophyte is abnormal.,No obvious gross morphological changes with the exception that siliques are shorter and contained reduced numbers of seed. Abnormal pollen accounts for approximately 30% of all pollen grains. Complete female gametophyte defective; Male gametophyte defective-C. Makaroff-2007 FUNCTION: May be involved in sister chromatid cohesion during mitosis. R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; 77141,82589 Sister chromatid cohesion 1 protein 3 (SCC1 homolog 3) (AtRAD21-2),Uncharacterized protein AT4g05360 (Zinc knuckle (CCHC-type) family protein) nuclear cohesin complex [GO:0000798]; nucleolus [GO:0005730]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; cell division [GO:0051301]; double-strand break repair [GO:0006302]; megagametogenesis [GO:0009561]; pollen development [GO:0009555]; sister chromatid cohesion [GO:0007062],nuclear cohesin complex [GO:0000798]; chromatin binding [GO:0003682]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; double-strand break repair [GO:0006302]; sister chromatid cohesion [GO:0007062] TISSUE SPECIFICITY: Low expression in shoots, buds, siliques, leaves and roots. Found in, but not limited to, actively dividing cells: in procambium, protoderm and ground meristem in roots, and in shoot and floral meristems. locus:2097548;,locus:2115934; AT3G59550,AT4G05360 Conserved region of Rad21 / Rec8 like protein Os08g0266700 protein (RIX4-4) (cDNA clone:J033032L24, full insert sequence) Q6YTK0 Q6YTK0_ORYSJ Os08g0266700 RIX4 Os08g0266700 OsJ_26669 OSJNBa0023I13.37 OSNPB_080266700 ENOG411DPN2 CLMP1 O48802 PHOX2_ARATH Protein CLMP1 (CLUMPED CHLOROPLASTS 1) (Protein MADB2) (Protein PHOX2) (Putative myosin adapter B2) DISRUPTION PHENOTYPE: Normal constriction of plastids during division, but impaired separation, resulting in plastid clustering. The clumped-chloroplasts mutant phenotype is transient. In juvenile leaves, clustered chloroplasts are observed in almost all cells of the petiole, while in the oldest leaf, the phenotype is mostly absent (PubMed:22025705). Phox1, phox2, phox3 and phox4 quadruple mutants show a 70% reduction in root hair growth (PubMed:28096376). {ECO:0000269|PubMed:22025705, ECO:0000269|PubMed:28096376}. FUNCTION: Required for plastid separation and partitioning during cell division (PubMed:22025705). Not involved in plastid constriction or in the organization of cytoplasmic actin cables (PubMed:22025705). Contributes to polar growth of root hairs (PubMed:28096376). {ECO:0000269|PubMed:22025705, ECO:0000269|PubMed:28096376}. 82708 Protein CLMP1 (CLUMPED CHLOROPLASTS 1) (Protein MADB2) (Protein PHOX2) (Putative myosin adapter B2) cytosol [GO:0005829] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, apex, flowers and seeds (PubMed:20856808). Detected throughout the petiole in juvenile and young leaves, but restricted to the petiole midvein in older leaves (PubMed:22025705). Expressed in hydathodes, at the base of the trichome, in the vascular cylinder of primary root and lateral root, in emerging lateral root primordia, in pollen and in developing embryos, but not in mature embryos (PubMed:22025705). {ECO:0000269|PubMed:20856808, ECO:0000269|PubMed:22025705}. locus:2027104; AT1G62390 domain-containing protein Os09g0135400 protein (Fragment) A0A0P0XJ24 A0A0P0XJ24_ORYSJ Os09g0135400 OSNPB_090135400 ENOG411DPN3 CXE15 Q9FG13,A0A1P8BCJ0 CXE15_ARATH,A0A1P8BCJ0_ARATH Probable carboxylesterase 15 (AtCXE15) (EC 3.1.1.1),Alpha/beta-Hydrolases superfamily protein FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT5G06570-MONOMER; 3.1.1.1 36597,38462 Probable carboxylesterase 15 (AtCXE15) (EC 3.1.1.1),Alpha/beta-Hydrolases superfamily protein carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056],hydrolase activity [GO:0016787]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2144083; AT5G06570 carboxylesterase 15-like Os07g0162900 protein (Fragment) A0A0P0X2H6 A0A0P0X2H6_ORYSJ Os07g0162900 OSNPB_070162900 ENOG411DPN0 PCS1 Q9LZL3,O22282 PCS1L_ARATH,O22282_ARATH Aspartic proteinase PCS1 (EC 3.4.23.-) (Aspartic protease 38) (AtASP38) (Protein EMBRYO DEFECTIVE 24) (Protein PROMOTION OF CELL SURVIVAL 1),Eukaryotic aspartyl protease family protein (Expressed protein) (Uncharacterized protein At2g39710) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:15723040}. Around one-third of the ovules from pcs1/+ plants showed abnormal morphology at the stage of flower opening which then turned brown and degenerated a few days post-pollination. Around 10 to 15% of developing seeds from a self-pollinated pcs1/+ plant were homozygous for the mutant allele and all pcs1/pcs1 seeds were aborted at early stages. In developing embryos there was no obvious differences between wt and pcs1 embryos before the heart stage. At the torpedo stage however pcs1 embryos underwent degeneration. Degenerated cells were apoptotic which indicates that the pcs1 mutation causes excessive cell death of embryonic tissues. Embryo defective; Male and female gametophyte defective-Y. Xia-2007 FUNCTION: Embryo-specific aspartic protease that limits programmed cell death during reproductive development. Possesses peptidase activity toward casein in vitro. {ECO:0000269|PubMed:15723040}. MISCELLANEOUS: Ectopic expression of PCS1 induces survival of cells of the anther wall including stomium and septum cells. This leads to a failure in anther dehiscence and subsequent male sterility (PubMed:15723040). {ECO:0000305|PubMed:15723040}. 3.4.23.- 49678,48005 Aspartic proteinase PCS1 (EC 3.4.23.-) (Aspartic protease 38) (AtASP38) (Protein EMBRYO DEFECTIVE 24) (Protein PROMOTION OF CELL SURVIVAL 1),Eukaryotic aspartyl protease family protein (Expressed protein) (Uncharacterized protein At2g39710) endoplasmic reticulum [GO:0005783]; aspartic-type endopeptidase activity [GO:0004190]; peptidase activity [GO:0008233]; programmed cell death [GO:0012501]; protein catabolic process [GO:0030163],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] TISSUE SPECIFICITY: Expressed specifically in developing gametophytes and developing seeds. {ECO:0000269|PubMed:15723040}. locus:2185173;,locus:2043245; AT5G02190,AT2G39710 aspartic proteinase Eukaryotic aspartyl protease family protein, expressed (Os03g0271900 protein) (cDNA clone:001-205-H04, full insert sequence) (cDNA clone:J033030P16, full insert sequence) (cDNA clone:J033123A19, full insert sequence),Os01g0844500 protein Q84Q80,A0A0P0VAB8 Q84Q80_ORYSJ,A0A0P0VAB8_ORYSJ OJ1261C08.11 LOC_Os03g16500 Os03g0271900 OSNPB_030271900,Os01g0844500 OSNPB_010844500 ENOG411DPN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os09g0569800 protein Q0IZH1 Q0IZH1_ORYSJ Os09g0569800 Os09g0569800 OSNPB_090569800 ENOG411DPN8 PUR2 P52420 PUR2_ARATH Phosphoribosylamine--glycine ligase, chloroplastic (EC 6.3.4.13) (Glycinamide ribonucleotide synthetase) (GARS) (Phosphoribosylglycinamide synthetase) PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2. ARA:AT1G09830-MONOMER; R-ATH-73817; 6.3.4.13 56473 Phosphoribosylamine--glycine ligase, chloroplastic (EC 6.3.4.13) (Glycinamide ribonucleotide synthetase) (GARS) (Phosphoribosylglycinamide synthetase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; phosphoribosylamine-glycine ligase activity [GO:0004637]; 'de novo' IMP biosynthetic process [GO:0006189]; purine nucleobase biosynthetic process [GO:0009113] locus:2024321; AT1G09830 phosphoribosylamine-glycine ligase Os08g0191200 protein (Putative glycinamide ribonucleotide synthetase) (cDNA clone:001-207-C06, full insert sequence) (cDNA clone:J013119I22, full insert sequence) Q6YZX5 Q6YZX5_ORYSJ Os08g0191200 Os08g0191200 OsJ_26312 OSJNBa0056O06.1 OSNPB_080191200 P0610E02.33 ENOG411DPNV F4K2M9 F4K2M9_ARATH Alpha/beta-Hydrolases superfamily protein 40105 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2832896; AT5G19850 hydrolase alpha beta fold family protein Os07g0575800 protein (Fragment) A0A0N7KNQ7 A0A0N7KNQ7_ORYSJ Os07g0575800 OSNPB_070575800 ENOG411DPNT SHOC1 F4KG50 SHOC1_ARATH Protein SHORTAGE IN CHIASMATA 1 DISRUPTION PHENOTYPE: Reduction in the number of class I crossovers (COs) during meiosis (PubMed:18812090, PubMed:21771883). Impaired fertility due to altered male and female meiosis (PubMed:18812090). {ECO:0000269|PubMed:18812090, ECO:0000269|PubMed:21771883}. Reduced fertility. Short siliques. Both gametophytes are affected. A large proportion of pollen is dead and most (ca. 80%) of embryo sacs are defective or degenerated. Meiosis is abnormal with fewer chiasmata formed.,Reduced number of chiasmata. Reduced fertility due to defects in meiosis-P. Merier-2008 FUNCTION: Essential for the formation of class I meiotic crossovers. {ECO:0000269|PubMed:18812090, ECO:0000269|PubMed:21771883}. 179455 Protein SHORTAGE IN CHIASMATA 1 nucleus [GO:0005634]; plasmodesma [GO:0009506]; resolution of meiotic recombination intermediates [GO:0000712] TISSUE SPECIFICITY: Highest levels in young buds, where male meiosis occurs. Also present at low levels in plantlets, leaves, flowers, and roots. {ECO:0000269|PubMed:18812090}. locus:2156642; AT5G52290 NA Os02g0642600 protein (Fragment) A0A0P0VMC7 A0A0P0VMC7_ORYSJ Os02g0642600 OSNPB_020642600 ENOG411DPNU MHF15.11 Q93V51 Q93V51_ARATH AT5g06370/MHF15_11 (NC domain-containing protein-like protein) (Uncharacterized protein At5g06370) 27847 AT5g06370/MHF15_11 (NC domain-containing protein-like protein) (Uncharacterized protein At5g06370) cellular response to lead ion [GO:0071284] locus:2164260; AT5G06370 NC domain-containing protein Os05g0440050 protein (Os05g0440100 protein) Q60DG8 Q60DG8_ORYSJ Os05g0440100 Os05g0440050 B1110B01.1 OsJ_18691 OSNPB_050440100 ENOG411DPNR SYP24,SYP23,SYP22,ATSYP24 Q9C615,O04378,P93654,A8MS65,A0A1P8AN48 SYP24_ARATH,SYP23_ARATH,SYP22_ARATH,A8MS65_ARATH,A0A1P8AN48_ARATH Putative syntaxin-24 (AtSYP24),Syntaxin-23 (AtPLP) (AtSYP23) (AtPEP12-like protein),Syntaxin-22 (AtSYP22) (AtVAM3) (Protein SHOOT GRAVITROPISM 3),AT4G17730 protein (Syntaxin of plants 23),Syntaxin DISRUPTION PHENOTYPE: The sgr3-1 mutant has a reduced gravitropic response in inflorescence stem but a normal gravitropic response in hypocotyls. Reduced formation of vacuolar membrane 'bulbs'. {ECO:0000269|PubMed:21645145, ECO:0000269|PubMed:8819871}. The morphology of mutant plants was similar and to some extend weaker than ssm plants. Ectopic occurrence of myrosin cells is found in the leaves (increased number of myrosin cells). Mutant plants accumulated abnormally abundant levels of TGG1 and TGG2 both enzymatically active proteins.,Inflorescence stems of mutant plants showed delayed and reduced gravitropic response in horizontal gravistimulation experiments. Ethyolated hypocotyls and roots showed normal positive gravitropism. Lateral branches grew nearly horizontally however no other morphological defects were detected in mutant plants. Growth rate of inflorescence stems was slightly reduced but the overal size of the mutant plants were the same as wild type.,Semi-dwarf and wavy leaf phenotype due to the elongation of the stem internodes and leaves. Initially mutant seedlings were indistinguishable from wild-type under continuous light conditions but as they grow the mutant plants develop short rosette leaves with severely wavy leaf blades. Mutant plants begin flowering several days later than wild-type plants during the reproductive stages of growth. They also display more rosette leaves than wild-type plants and show reduced growth of the inflorescence stems. The height of the mature ssm plants measures approximately one-quarter of that of the wild type. In contrast to these distinct phenotypes however the morphology of the flower organs and the fertility levels are unaffected in ssm plants. Histological analyses revealed that the length of the epidermal cells in the inflorescence stems of ssm plants was shorter that wild type but that the ssm mutation has little or no effect on the lengths of the pith parenchyma cells. Furthermore the length of the parenchyma cells around the midribs of the rosette leaf petioles is clearly reduced in ssm mutants whereas the mesophyll cell size in the rosette leaf blades is unaffected.,Embryo lethal.Mutant embryos look normal.,Double mutant enhances the effect of SYP22 single mutant. Increased leaf serration and dwarfism. Null: Male gametophyte defective; Knockdown 1: Serrated, wavy leaves; Semi-dwarf; Late flowering; Knockdown 2: Reduced inflorescence gravitropism-N. Raikhel-2001 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}.,FUNCTION: May function in the docking or fusion of transport vesicles with the prevacuolar membrane.,FUNCTION: May provide the t-SNARE function in the vacuolar assembly. Promotes the formation of vacuolar membrane 'bulbs'. Required for inflorescence stem gravitropism. {ECO:0000269|PubMed:21645145, ECO:0000269|PubMed:8819871}. MISCELLANEOUS: In cv. RLD, the 22 amino acids extension regenerates a typical syntaxin transmembrane domain. In cv. Columbia it encodes a protein that has no terminal transmembrane domain, but that is however not detected in cytosolic fractions. 47628,28604,29481,29292,38915 Putative syntaxin-24 (AtSYP24),Syntaxin-23 (AtPLP) (AtSYP23) (AtPEP12-like protein),Syntaxin-22 (AtSYP22) (AtVAM3) (Protein SHOOT GRAVITROPISM 3),AT4G17730 protein (Syntaxin of plants 23),Syntaxin endomembrane system [GO:0012505]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; SNARE complex [GO:0031201]; vacuole [GO:0005773]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; amyloplast organization [GO:0009660]; intracellular protein transport [GO:0006886]; negative gravitropism [GO:0009959]; stomatal movement [GO:0010118]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],vacuolar membrane [GO:0005774]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],membrane [GO:0016020]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed at higher levels in leaves, flowers and stems than in roots.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flower and green siliques. locus:2028336;,locus:3356150;,locus:2129406; AT1G32270,AT4G17730,AT5G46860 syntaxin Os01g0254900 protein (Putative syntaxin 7) (cDNA clone:J013136O09, full insert sequence),Os06g0223000 protein Q9S7H0,A0A0P0WUG8 Q9S7H0_ORYSJ,A0A0P0WUG8_ORYSJ Os01g0254900 Os01g0254900 OsJ_01141 OSNPB_010254900 P0705D01.23 P0711E10.13,Os06g0223000 OSNPB_060223000 ENOG411DPNS Q94C53,A0A1P8B577 DDRGK_ARATH,A0A1P8B577_ARATH DDRGK domain-containing protein 1,DDRGK domain protein 34019,26294 DDRGK domain-containing protein 1,DDRGK domain protein endoplasmic reticulum [GO:0005783] locus:2136457; AT4G27120 DDRGK domain-containing protein DDRGK domain-containing protein 1 Q8LH03 DDRGK_ORYSJ Os07g0103200 LOC_Os07g01320 OsJ_22784 P0446F04.109 ENOG411DPNP Q93ZY6,Q93ZC2,A0A1P8BB34 Q93ZY6_ARATH,Q93ZC2_ARATH,A0A1P8BB34_ARATH ARM repeat superfamily protein (Uncharacterized protein At1g65220),ARM repeat superfamily protein (AT5g36230/T30G6_9) (Uncharacterized protein At5g36230),ARM repeat superfamily protein 47060,47215,48849 ARM repeat superfamily protein (Uncharacterized protein At1g65220),ARM repeat superfamily protein (AT5g36230/T30G6_9) (Uncharacterized protein At5g36230),ARM repeat superfamily protein cytosol [GO:0005829]; membrane [GO:0016020] locus:2200400;,locus:2183602; AT1G65220,AT5G36230 Basic leucine zipper and W2 domain-containing protein Expressed protein (Os11g0414000 protein) (cDNA clone:J023082M08, full insert sequence) (eIF4-gamma/eIF5/eIF2-epsilon domain containing protein),Os11g0414000 protein (Fragment) Q2R678,A0A0N7KSU1 Q2R678_ORYSJ,A0A0N7KSU1_ORYSJ Os11g0414000 LOC_Os11g21990 Os11g0414000 OSNPB_110414000,Os11g0414000 OSNPB_110414000 ENOG411DPNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os12g0233200 protein A0A0P0Y8D2 A0A0P0Y8D2_ORYSJ Os12g0233200 OSNPB_120233200 ENOG411DPNY UGT76E1,UGT76E11,UGT76E2,UGT76E9,UGT76E12,UGT76E7 Q9LTH3,Q9SNB1,Q9LTH2,Q9LS21,Q94AB5,Q9LS16,Q9FKD1,B3H6X0 U76E1_ARATH,U7E11_ARATH,U76E2_ARATH,U76E9_ARATH,U7E12_ARATH,U76E7_ARATH,Q9FKD1_ARATH,B3H6X0_ARATH UDP-glycosyltransferase 76E1 (EC 2.4.1.-),UDP-glycosyltransferase 76E11 (EC 2.4.1.-),UDP-glycosyltransferase 76E2 (EC 2.4.1.-),UDP-glycosyltransferase 76E9 (EC 2.4.1.-),UDP-glycosyltransferase 76E12 (EC 2.4.1.-) (EC 2.4.1.91),UDP-glycosyltransferase 76E7 (EC 2.4.1.-),Glucosyltransferase-like protein (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein),UDP-Glycosyltransferase superfamily protein FUNCTION: Possesses low quercetin 3-O-glucosyltransferase and 7-O-glucosyltransferase activities in vitro. {ECO:0000269|PubMed:15352060}.,FUNCTION: Possesses quercetin 3-O-glucosyltransferase and 7-O-glucosyltransferase activities in vitro. {ECO:0000269|PubMed:15352060}. ARA:AT5G38010-MONOMER;,ARA:AT5G38040-MONOMER;,ARA:AT5G37950-MONOMER; 2.4.1.-,2.4.1.-; 2.4.1.91 50804,50564,50096,50711,51662,50620,39042,38490 UDP-glycosyltransferase 76E1 (EC 2.4.1.-),UDP-glycosyltransferase 76E11 (EC 2.4.1.-),UDP-glycosyltransferase 76E2 (EC 2.4.1.-),UDP-glycosyltransferase 76E9 (EC 2.4.1.-),UDP-glycosyltransferase 76E12 (EC 2.4.1.-) (EC 2.4.1.91),UDP-glycosyltransferase 76E7 (EC 2.4.1.-),Glucosyltransferase-like protein (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein),UDP-Glycosyltransferase superfamily protein intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2148363;,locus:2075120;,locus:2148378;,locus:2144456;,locus:2075215;,locus:2144426;,locus:2153809; AT5G59580,AT3G46670,AT5G59590,AT5G38010,AT3G46660,AT5G38040,AT5G37950 UDP-Glycosyltransferase NA NA NA NA NA NA NA ENOG411DPNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0651400 protein (Fragment),Os01g0651300 protein (cDNA clone:002-181-D09, full insert sequence) C7IWA6,Q5VP26 C7IWA6_ORYSJ,Q5VP26_ORYSJ Os01g0651400 Os01g0651400 OSNPB_010651400,Os01g0651300 Os01g0651300 OJ1159_D09.23 OSNPB_010651300 ENOG411DPNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RHO Rac-like GTP-binding protein 1 (OsRac1),Os01g0229400 protein (cDNA clone:J023077H07, full insert sequence) Q9SSX0,B7EIY2 RAC1_ORYSJ,B7EIY2_ORYSJ RAC1 Os01g0229400 LOC_Os01g12900,Os01g0229400 OSNPB_010229400 FUNCTION: Small GTPase playing a general role in disease resistance signaling pathway. Acts downstream of heterotrimeric G protein alpha subunit. Regulates cell death and reactive oxygen species production, probably through NADPH oxidase. Also involved in sphingolipid elicitor (SE)-dependent defense signaling. Activates phytoalexin production and alters defense-related genes. Down-regulates metallothionein 2b, a reactive oxygen scavenger (PubMed:10485927, PubMed:11149940, PubMed:12237405, PubMed:15220467). May control lignin synthesis through regulation of both NADPH oxidase and CCR1 activities during defense responses. Stimulates lignin synthesis in suspension cell culture (PubMed:15951489). {ECO:0000269|PubMed:10485927, ECO:0000269|PubMed:11149940, ECO:0000269|PubMed:12237405, ECO:0000269|PubMed:15220467, ECO:0000269|PubMed:15951489}. ENOG411DPND PCMP-E14 O04659 PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110 77985 Pentatricopeptide repeat-containing protein At5g27110 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2181201; AT5G27110 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DPNE HSL1 Q9SGP2 HSL1_ARATH Receptor-like protein kinase HSL1 (EC 2.7.11.1) (Protein HAESA-LIKE1) 2.7.11.1 108929 Receptor-like protein kinase HSL1 (EC 2.7.11.1) (Protein HAESA-LIKE1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] DEVELOPMENTAL STAGE: Decreased expression shortly before the onset of abscission. {ECO:0000269|PubMed:18660431}. locus:2032553; AT1G28440 receptor-like protein kinase Os01g0239700 protein (Putative leucine-rich receptor-like protein kinase) (cDNA clone:J013116J03, full insert sequence) (cDNA clone:J033133B05, full insert sequence),Os01g0239700 protein (Fragment) Q9ARQ7,A0A0P0V0F1 Q9ARQ7_ORYSJ,A0A0P0V0F1_ORYSJ Os01g0239700 Os01g0239700 OSJNBa0010K01.7 OSNPB_010239700,Os01g0239700 OSNPB_010239700 ENOG411DPNB F4JKW9 F4JKW9_ARATH ARM repeat superfamily protein 33270 ARM repeat superfamily protein locus:2130814; AT4G15830 Inherit from KOG: family with sequence similarity 179 member Os01g0931200 protein (cDNA clone:001-118-A06, full insert sequence) Q5JK27 Q5JK27_ORYSJ Os01g0931200 OSJNBa0052O12.40 OSNPB_010931200 P0506E04.18 ENOG411DPNC PAT16 Q93VV0 ZDHC6_ARATH Probable protein S-acyltransferase 16 (EC 2.3.1.225) (Probable palmitoyltransferase At3g09320) (Zinc finger DHHC domain-containing protein At3g09320) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.4}. 2.3.1.225; 2.3.1.225 32377 Probable protein S-acyltransferase 16 (EC 2.3.1.225) (Probable palmitoyltransferase At3g09320) (Zinc finger DHHC domain-containing protein At3g09320) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2083504; AT3G09320 zinc finger S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q5N9N4,Q65XG2,A0A0P0VA59 Q5N9N4_ORYSJ,Q65XG2_ORYSJ,A0A0P0VA59_ORYSJ P0446B05.1-1 P0406G08.36-1 Os01g0844400 OSNPB_010844400,Os05g0458000 OJ1362_D02.5 OSNPB_050458000,Os01g0844400 OSNPB_010844400 ENOG411DPNA RAD4 Q8W489,A0A1R7T387 RAD4_ARATH,A0A1R7T387_ARATH DNA repair protein RAD4,DNA repair protein Rad4 family FUNCTION: May have a role in the nucleotide excision repair (NER) pathway. {ECO:0000305|PubMed:16786311}. R-ATH-5696394;R-ATH-5696395; 96285,70135 DNA repair protein RAD4,DNA repair protein Rad4 family chloroplast [GO:0009507]; nucleotide-excision repair factor 2 complex [GO:0000111]; XPC complex [GO:0071942]; damaged DNA binding [GO:0003684]; single-stranded DNA binding [GO:0003697]; mismatch repair [GO:0006298]; nucleotide-excision repair [GO:0006289],nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; nucleotide-excision repair [GO:0006289] locus:2174160; AT5G16630 DNA repair protein Os08g0427500 protein (Putative xeroderma pigmentosum group C protein) Q7EY71 Q7EY71_ORYSJ Os08g0427500 OJ1663_D06.8 OSJNBb0032E15.115 OSNPB_080427500 ENOG411DPNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF561) Os05g0565400 protein (cDNA clone:001-013-E05, full insert sequence) (cDNA clone:001-042-C08, full insert sequence) (cDNA clone:J023002B08, full insert sequence) Q6AUF2 Q6AUF2_ORYSJ Os05g0565400 Os05g0565400 OsJ_19565 OSJNBb0053D02.19 OSNPB_050565400 ENOG411DPNJ FZL Q1KPV0,A0A1P8AUL2,A0A1P8AUL4 FZL_ARATH,A0A1P8AUL2_ARATH,A0A1P8AUL4_ARATH Probable transmembrane GTPase FZO-like, chloroplastic (EC 3.6.5.-),FZO-like protein DISRUPTION PHENOTYPE: Pale green leaves phenotype and delayed flowering (PubMed:16617119). Decreased number of chloroplasts and heterogeneity in size in mature mesophyll cells (PubMed:16617119, PubMed:23963675). Abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids (PubMed:16617119). Lesion mimic phenotype with activation of defense response markers in the ecotype Landsberg erecta (PubMed:23963675). {ECO:0000269|PubMed:16617119, ECO:0000269|PubMed:23963675}. Similar to SALK_033745 line,The leaves were visibly pale and flowering was delayed by 5-7 days compared with the wild type plants. Mature mesophyll cells in mutant leaves contained fewer larger chloroplasts than in wild type and these were heterogeneous in size. This phenotype was more pronounced in older than in younger leaves. Mesophyll cell chloroplasts in wild type and mutant plants also differed ultrastructurally. In mutants grana lamellae were less uniform in length and stacked in a staggered fashion giving rise to a disorganized thylakoid array. Stroma thylakoids appeared less abundant than in wild type chloroplasts. In contrast stroma thylakoids in mutants were similar in length to those in wild type but constituted a smaller proportion of the total thylakoid network. Pale green leaves; Late flowering-K. Osteryoung-2006 FUNCTION: Probable membrane-remodeling GTPase that plays a unique role in the in the determination of thylakoid and chloroplast morphology and regulates organization of the thylakoid network. Not involved in the determination of mitochondrial morphology or ultrastructure. {ECO:0000269|PubMed:16617119}. 3.6.5.- 100731,76569,97084 Probable transmembrane GTPase FZO-like, chloroplastic (EC 3.6.5.-),FZO-like protein chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; chloroplast membrane [GO:0031969]; chloroplast outer membrane [GO:0009707]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; negative regulation of defense response to bacterium, incompatible interaction [GO:1902478]; negative regulation of plant-type hypersensitive response [GO:0034051]; thylakoid membrane organization [GO:0010027]; vegetative to reproductive phase transition of meristem [GO:0010228],catalytic activity [GO:0003824]; GTP binding [GO:0005525] locus:2007579; AT1G03160 Dynamin family Os05g0390100 protein (cDNA clone:J013026B01, full insert sequence) Q6I5X7 Q6I5X7_ORYSJ Os05g0390100 OJ1562_H01.8 OSNPB_050390100 ENOG411DPNK FAB1D Q9XID0,A0A1P8ASD3 FAB1D_ARATH,A0A1P8ASD3_ARATH Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1D),FORMS APLOID AND BINUCLEATE CELLS 1A FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Catalyzes the phosphorylation of phosphatidylinositol 3-phosphate on the fifth hydroxyl of the myo-inositol ring, to form phosphatidylinositol 3,5-bisphosphate (By similarity). {ECO:0000250}. ARA:AT1G34260-MONOMER; R-ATH-1660514;R-ATH-1660516;R-ATH-1660517; Phosphatidylinositol signaling system (04070),Regulation of actin cytoskeleton (04810),Inositol phosphate metabolism (00562),Phagosome (04145) 2.7.1.150 164759,137965 Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1D),FORMS APLOID AND BINUCLEATE CELLS 1A cytosol [GO:0005829]; endosome membrane [GO:0010008]; 1-phosphatidylinositol-3-phosphate 5-kinase activity [GO:0000285]; ATP binding [GO:0005524]; phosphatidylinositol phosphorylation [GO:0046854]; retrograde transport, endosome to Golgi [GO:0042147],ATP binding [GO:0005524]; phosphatidylinositol phosphate kinase activity [GO:0016307] locus:2026109; AT1G34260 phosphatidylinositol-4-phosphate 5-kinase Os12g0236700 protein (Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed),Os04g0691900 protein,Os08g0104700 protein (Phosphatidylinositol 3,5-kinase-like),Os08g0104700 protein (Fragment),Os09g0278300 protein Q2QVA9,Q0J8R0,Q6ZJN4,A0A0P0XAT4,A0A0P0XKK3 Q2QVA9_ORYSJ,Q0J8R0_ORYSJ,Q6ZJN4_ORYSJ,A0A0P0XAT4_ORYSJ,A0A0P0XKK3_ORYSJ LOC_Os12g13440 Os12g0236700 OSNPB_120236700,Os04g0691900 Os04g0691900 OSNPB_040691900,Os08g0104700 OJ1300_E01.3 OsJ_25744 OSNPB_080104700,Os08g0104700 OSNPB_080104700,Os09g0278300 OSNPB_090278300 ENOG411DPNH O48783 O48783_ARATH Expressed protein (FkbM family methyltransferase) 35195 Expressed protein (FkbM family methyltransferase) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; methyltransferase activity [GO:0008168] locus:2043863; AT2G26680 Inherit from COG: Methyltransferase Methyltransferase, FkbM family protein, expressed (Os03g0566600 protein) (cDNA clone:001-114-F07, full insert sequence) Q10I28 Q10I28_ORYSJ Os03g0566600 OSJNBa0026A15.13 LOC_Os03g36910 Os03g0566600 OsJ_11469 OSNPB_030566600 ENOG411DPNI GAMMA-ADR,GAMMA-ADAPTIN 1 Q9ZUI6,Q84K16,A0A1P8AN36,A0A1P8AN37,A0A1P8AT76,F4I7P0,F4IEP9 AP1G2_ARATH,AP1G1_ARATH,A0A1P8AN36_ARATH,A0A1P8AN37_ARATH,A0A1P8AT76_ARATH,F4I7P0_ARATH,F4IEP9_ARATH AP-1 complex subunit gamma-2 (Adaptor protein complex AP-1 large subunit gamma-2) (Adaptor-related protein complex 1 subunit gamma-2) (Clathrin assembly protein complex 1 gamma-2 large chain) (Gamma-adaptin 2),AP-1 complex subunit gamma-1 (Adaptor protein complex AP-1 large subunit gamma-1) (Adaptor-related protein complex 1 subunit gamma-1) (Clathrin assembly protein complex 1 gamma-1 large chain) (At-g-Ad) (At-gamma-Ad) (Gamma-adaptin 1),Apoptosis inhibitory protein,Gamma-adaptin 1,Adaptor protein complex AP-1, gamma subunit FUNCTION: Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting at the trans-Golgi network and early endosomes (TGN/EE). The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (By similarity). {ECO:0000250}. R-ATH-432720; 94670,96469,139435,139307,95106,145548,98819 AP-1 complex subunit gamma-2 (Adaptor protein complex AP-1 large subunit gamma-2) (Adaptor-related protein complex 1 subunit gamma-2) (Clathrin assembly protein complex 1 gamma-2 large chain) (Gamma-adaptin 2),AP-1 complex subunit gamma-1 (Adaptor protein complex AP-1 large subunit gamma-1) (Adaptor-related protein complex 1 subunit gamma-1) (Clathrin assembly protein complex 1 gamma-1 large chain) (At-g-Ad) (At-gamma-Ad) (Gamma-adaptin 1),Apoptosis inhibitory protein,Gamma-adaptin 1,Adaptor protein complex AP-1, gamma subunit clathrin adaptor complex [GO:0030131]; clathrin-coated vesicle membrane [GO:0030665]; Golgi apparatus [GO:0005794]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],AP-1 adaptor complex [GO:0030121]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],membrane coat [GO:0030117]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; Golgi apparatus [GO:0005794]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2199897;,locus:1006230767;,locus:2202750; AT1G60070,AT1G23900,AT1G23935 AP-1 complex subunit Os02g0805000 protein,AP-1 complex subunit gamma,Os06g0167100 protein (Fragment) Q0DWN8,Q5WAB3,A0A0P0WSR3 Q0DWN8_ORYSJ,Q5WAB3_ORYSJ,A0A0P0WSR3_ORYSJ Os02g0805000 Os02g0805000 OSNPB_020805000,Os06g0167100 Os06g0167100 OsJ_20260 OSNPB_060167100 P0680A03.21,Os06g0167100 OSNPB_060167100 ENOG411DV52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SacI homology domain Os02g0782600 protein (Fragment),Aspartic protease-like (Os02g0782600 protein),Os10g0428200 protein (Fragment) Q0DX06,Q6K7E8,A0A0P0XUW1 Q0DX06_ORYSJ,Q6K7E8_ORYSJ,A0A0P0XUW1_ORYSJ Os02g0782600 Os02g0782600 OSNPB_020782600,OJ1311_D08.7 Os02g0782600 OSNPB_020782600,Os10g0428200 OSNPB_100428200 ENOG411E8WN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0659800 protein Q67U22 Q67U22_ORYSJ Os06g0659800 Os06g0659800 B1047G05.39 OSJNBa0051O02.11 OSNPB_060659800 ENOG411E8WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0922700 protein Q5JJN6 Q5JJN6_ORYSJ Os01g0922700 Os01g0922700 B1455F06.13 OsJ_04585 OSNPB_010922700 ENOG411E8WJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fused compound leaf NA NA NA NA NA NA NA ENOG411E8WK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WF Q9SN67 Q9SN67_ARATH Uncharacterized protein AT4g10810 (Uncharacterized protein F25I24.20) 8490 Uncharacterized protein AT4g10810 (Uncharacterized protein F25I24.20) locus:2123371; AT4G10810 NA NA NA NA NA NA NA NA ENOG411E8WG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WE ; ; P94024 M170_ARATH Uncharacterized mitochondrial protein AtMg00170/AtMg00620 (ORF139b/ORF139a) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07722) is not demonstrated. 15710 Uncharacterized mitochondrial protein AtMg00170/AtMg00620 (ORF139b/ORF139a) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966] locus:504954501;locus:504954545; AT2G07722ATMG00170;ATMG00620; NA NA NA NA NA NA NA NA ENOG411E8WB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain NA NA NA NA NA NA NA ENOG411E8WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WA Q147P4,A0A1I9LNN2 Q147P4_ARATH,A0A1I9LNN2_ARATH At3g50040,Uncharacterized protein 47949,42581 At3g50040,Uncharacterized protein locus:2083083; AT3G50040 NA NA NA NA NA NA NA NA ENOG411E8WZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411E8WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0522100 protein,Os01g0522600 protein Q0JMA0,A0A0P0V3F8 Q0JMA0_ORYSJ,A0A0P0V3F8_ORYSJ Os01g0522100 Os01g0522100 OSNPB_010522100,Os01g0522600 OSNPB_010522600 ENOG411E8WY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone methylation protein DOT1 NA NA NA NA NA NA NA ENOG411E8WV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0157400 protein A0A0P0WI61 A0A0P0WI61_ORYSJ Os05g0157400 OSNPB_050157400 ENOG411E8WW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BHL NA NA NA NA NA NA NA ENOG411E8WT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8WQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8W8 Q1PE70 Q1PE70_ARATH Uncharacterized protein 13321 Uncharacterized protein locus:505006492; AT4G18395 NA NA NA NA NA NA NA NA ENOG411E8W9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: exosome component NA NA NA NA NA NA NA ENOG411E8W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8W7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0190700 protein Q6YUU1 Q6YUU1_ORYSJ Os02g0190700 OsJ_05701 OSJNBb0031B09.23 OSNPB_020190700 ENOG411E8W4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8W5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0209400 protein Q0DDQ1 Q0DDQ1_ORYSJ Os06g0209400 Os06g0209400 OSNPB_060209400 P0664C05.31 ENOG411E8W2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0220900 protein Q67VZ6 Q67VZ6_ORYSJ Os06g0220900 Os06g0220900 OsJ_20627 OSNPB_060220900 P0436F11.48 P0516A04.9 ENOG411E8W3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8W0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8W1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0398900 protein Q0JDJ6 Q0JDJ6_ORYSJ Os04g0398900 Os04g0398900 OSNPB_040398900 ENOG411EC0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411E3K9 emb1273 Q9XIB8,A0A1P8AVI5 Q9XIB8_ARATH,A0A1P8AVI5_ARATH At1g49510 (Embryo defective 1273) (F13F21.5 protein) (Uncharacterized protein At1g49510),Embryo defective 1273 Embryo defective; Cotyledon-D. Meinke-2002 27382,20940 At1g49510 (Embryo defective 1273) (F13F21.5 protein) (Uncharacterized protein At1g49510),Embryo defective 1273 integral component of membrane [GO:0016021]; chloroplast organization [GO:0009658],integral component of membrane [GO:0016021] locus:2010292; AT1G49510 NA NA NA NA NA NA NA NA ENOG411E3K5 MCA23.17 F4JYP3,Q3E8E9 F4JYP3_ARATH,Q3E8E9_ARATH Uncharacterized protein 19648,13660 Uncharacterized protein locus:2160927; AT5G47830 NA Os02g0158600 protein (cDNA clone:J013067F08, full insert sequence) Q6ET41 Q6ET41_ORYSJ Os02g0158600 B1103G11.19 OsJ_05452 OSNPB_020158600 P0419H03.39 ENOG411E3K4 NFD2 Q9FYL8 NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2 DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. Complete male gametophyte defective; Female gametophyte defective-G. Drews-2006 FUNCTION: Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus. {ECO:0000269|PubMed:16698901}. 20742 Protein NUCLEAR FUSION DEFECTIVE 2 vacuole [GO:0005773]; double-stranded RNA binding [GO:0003725]; ribonuclease III activity [GO:0004525]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; RNA processing [GO:0006396] locus:2024011; AT1G24450 RIBOc Os03g0854400 protein A0A0P0W5Q6 A0A0P0W5Q6_ORYSJ Os03g0854400 OSNPB_030854400 ENOG411E3K7 F26K9_270 Q8RUH0,O22247 Q8RUH0_ARATH,O22247_ARATH Putative small nuclear ribonucleoprotein D2 (Small nuclear ribonucleoprotein family protein),At2g47640 (Putative small nuclear ribonucleoprotein D2) (Small nuclear ribonucleoprotein family protein) (Small nuclear ribonucleoprotein-like protein) R-ATH-72163;R-ATH-72165; 12635,12507 Putative small nuclear ribonucleoprotein D2 (Small nuclear ribonucleoprotein family protein),At2g47640 (Putative small nuclear ribonucleoprotein D2) (Small nuclear ribonucleoprotein family protein) (Small nuclear ribonucleoprotein-like protein) catalytic step 2 spliceosome [GO:0071013]; cytosol [GO:0005829]; nucleolus [GO:0005730]; precatalytic spliceosome [GO:0071011]; U1 snRNP [GO:0005685]; U2 snRNP [GO:0005686]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; viral nucleocapsid [GO:0019013]; spliceosomal snRNP assembly [GO:0000387],small nuclear ribonucleoprotein complex [GO:0030532]; viral nucleocapsid [GO:0019013]; RNA splicing [GO:0008380] locus:2043323;locus:2081685; AT2G47640AT3G62840; Small nuclear ribonucleoprotein Os05g0314100 protein (Putative small nuclear ribonucleoprotein D2) (cDNA clone:J023090H02, full insert sequence) (cDNA, clone: J065062N18, full insert sequence),Os01g0967000 protein,Os05g0314100 protein (Fragment) Q5WMV0,A0A0P0VDD6,A0A0N7KKI5 Q5WMV0_ORYSJ,A0A0P0VDD6_ORYSJ,A0A0N7KKI5_ORYSJ Os05g0314100 OJ1308_D01.6 OsJ_18021 OSNPB_050314100,Os01g0967000 OSNPB_010967000,Os05g0314100 OSNPB_050314100 ENOG411E3K6 Q84JK1 Q84JK1_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g70200) 60338 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g70200) chloroplast [GO:0009507]; rRNA binding [GO:0019843]; plastid translation [GO:0032544]; response to cold [GO:0009409]; rRNA processing [GO:0006364] locus:2020668; AT1G70200 NA Os02g0326200 protein Q0E1L9 Q0E1L9_ORYSJ Os02g0326200 Os02g0326200 OsJ_06503 OSNPB_020326200 ENOG411E3K1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E3K0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Whole genome shotgun sequence of line PN40024 scaffold_1.assembly12x (Fragment) Os03g0624000 protein A0A0N7KHN7 A0A0N7KHN7_ORYSJ Os03g0624000 OSNPB_030624000 ENOG411E3K3 dl3485w O23344 O23344_ARATH Ferredoxin FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (Probable). Mediates alternative electron partitioning in conditions of acceptor limitation at photosystem I. Accepts electrons from photosystem I (PSI) and is capable of electron transfer with FNR, but cannot support photoreduction of NADP(+) (PubMed:20966083). {ECO:0000269|PubMed:20966083, ECO:0000305}. 16732 Ferredoxin chloroplast [GO:0009507]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; electron transport chain [GO:0022900] locus:2130424; AT4G14890 Ferredoxin Ferredoxin,Ferredoxin (Fragment) Q850T5,A0A0P0W0Z6 Q850T5_ORYSJ,A0A0P0W0Z6_ORYSJ OSJNBb0047K21.3 LOC_Os03g45710 Os03g0659200 OSNPB_030659200,Os03g0659200 OSNPB_030659200 FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. {ECO:0000256|RuleBase:RU364001}. ENOG411E3K2 ENA Q9LUN0,A0A1I9LR22 Q9LUN0_ARATH,A0A1I9LR22_ARATH At3g17670 (DnaJ/Hsp40 cysteine-rich domain superfamily protein) (Uncharacterized protein At3g17670),DnaJ/Hsp40 cysteine-rich domain superfamily protein 14753,10756 At3g17670 (DnaJ/Hsp40 cysteine-rich domain superfamily protein) (Uncharacterized protein At3g17670),DnaJ/Hsp40 cysteine-rich domain superfamily protein heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] locus:4010713752; AT3G17668 NA OSJNBa0086O06.7 protein (Os04g0589200 protein) (cDNA clone:J013156A17, full insert sequence),Os04g0589200 protein Q7XM02,A0A0P0WE23 Q7XM02_ORYSJ,A0A0P0WE23_ORYSJ Os04g0589200 Os04g0589200 OsJ_15954 OSJNBa0086O06.7 OSNPB_040589200,Os04g0589200 OSNPB_040589200 ENOG411E3KH Q94F10 Q94F10_ARATH Transmembrane protein, putative (DUF1118) (Uncharacterized protein At1g74730) 20735 Transmembrane protein, putative (DUF1118) (Uncharacterized protein At1g74730) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; granal stacked thylakoid [GO:0009515]; integral component of membrane [GO:0016021]; granum assembly [GO:0090391]; nonphotochemical quenching [GO:0010196]; thylakoid membrane organization [GO:0010027] locus:2027257; AT1G74730 Protein of unknown function (DUF1118) Os01g0585300 protein (cDNA clone:J023103B06, full insert sequence) Q0JLN9 Q0JLN9_ORYSJ Os01g0585300 Os01g0585300 OsJ_02380 OSNPB_010585300 ENOG411E3KK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIG2-like family Os11g0139900 protein,Os09g0573150 protein (Fragment) A0A0P0XZ44,A0A0P0XRK7 A0A0P0XZ44_ORYSJ,A0A0P0XRK7_ORYSJ Os11g0139900 OSNPB_110139900,Os09g0573150 OSNPB_090573150 ENOG411E3KG F24G16.70 Q9M1Z4,Q3EBH2,A0A1I9LT64,B3H7M7 Q9M1Z4_ARATH,Q3EBH2_ARATH,A0A1I9LT64_ARATH,B3H7M7_ARATH At3g59800 (Stress response protein) (Uncharacterized protein F24G16.70),Corepressor,Stress response protein 21472,18039,15552,19310 At3g59800 (Stress response protein) (Uncharacterized protein F24G16.70),Corepressor,Stress response protein plasmodesma [GO:0009506] locus:2080472;,locus:504956061; AT3G59800,AT2G43795 NA NA NA NA NA NA NA NA ENOG411E3KF RPS16-1,RPS16-2 O65686,Q9LTS6 RS16A_ARATH,RS16B_ARATH 30S ribosomal protein S16-1, chloroplastic (Small subunit ribosomal protein 16),30S ribosomal protein S16-2, chloroplastic/mitochondrial DISRUPTION PHENOTYPE: Embryo lethal, arresting development at the transition from the globular to the heart stage of embryonic development. {ECO:0000269|PubMed:8811862}. Embryo defective; Transition-N. Fedoroff-1996 12699,15101 30S ribosomal protein S16-1, chloroplastic (Small subunit ribosomal protein 16),30S ribosomal protein S16-2, chloroplastic/mitochondrial chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ribosome [GO:0005840]; small ribosomal subunit [GO:0015935]; protein domain specific binding [GO:0019904]; structural constituent of ribosome [GO:0003735]; embryo development ending in seed dormancy [GO:0009793]; mitochondrial translation [GO:0032543],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; small ribosomal subunit [GO:0015935]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, and, to a lower extent, in roots. {ECO:0000269|PubMed:8811862}.,TISSUE SPECIFICITY: Expressed at low levels in flowers, and, to a lower extent, in leaves, stems and roots. {ECO:0000269|PubMed:8811862}. locus:2139624;,locus:2164585; AT4G34620,AT5G56940 Ribosomal protein S16 Os09g0498100 protein,30S ribosomal protein S16-like (Os08g0517900 protein) (cDNA clone:002-107-B06, full insert sequence) Q0J0I9,Q84Z89 Q0J0I9_ORYSJ,Q84Z89_ORYSJ Os09g0498100 Os09g0498100 OsJ_29887 OSNPB_090498100,P0700D12.116 Os08g0517900 OsJ_27940 OSNPB_080517900 ENOG411E3KA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA polymerase II transcriptional coactivator Os02g0553600 protein (Transcriptional coactivator p15 (PC4) family protein-like) (cDNA clone:J023108D18, full insert sequence),Os02g0553500 protein (Fragment) Q69SU7,A0A0P0VKB5 Q69SU7_ORYSJ,A0A0P0VKB5_ORYSJ Os02g0553600 Os02g0553600 OSNPB_020553600 P0470G10.10,Os02g0553500 OSNPB_020553500 ENOG411E3KY MBG8.2 P41568,Q94JV4,Q9FFV1 SUI11_ARATH,SUI12_ARATH,Q9FFV1_ARATH Protein translation factor SUI1 homolog 1,Protein translation factor SUI1 homolog 2,At5g54760 (Protein translation factor Sui1 homolog) (Translation initiation factor SUI1 family protein) FUNCTION: Probably involved in translation. 12592,12590,12620 Protein translation factor SUI1 homolog 1,Protein translation factor SUI1 homolog 2,At5g54760 (Protein translation factor Sui1 homolog) (Translation initiation factor SUI1 family protein) translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417],translation initiation factor activity [GO:0003743] locus:2136462;,locus:2020088;,locus:2160120; AT4G27130,AT1G54290,AT5G54760 Protein translation factor SUI1 Protein translation factor SUI1 homolog (Protein GOS2) (Protein eIF1) (Translation initiation factor 1),Os05g0498400 protein (cDNA clone:J023049M22, full insert sequence),Os01g0794500 protein (Putative translation initiation factor),Os02g0151501 protein (Fragment) Q0D5W6,Q6L4U9,Q5ZBT6,A0A0P0VEX8 SUI1_ORYSJ,Q6L4U9_ORYSJ,Q5ZBT6_ORYSJ,A0A0P0VEX8_ORYSJ GOS2 Os07g0529800 LOC_Os07g34589,Os05g0498400 Os05g0498400 OSNPB_050498400 P0010D04.10,Os01g0794500 OSNPB_010794500 P0684C02.19,Os02g0151501 OSNPB_020151501 FUNCTION: Probably involved in translation. ENOG411E3KU MZA15.24,MZA15.25,MDE13.2 Q9FIP4,Q9FIP3,Q9FGP1,O82168,Q5BPS8,Q1PE74,F4JP70,F4ISW5 Q9FIP4_ARATH,Q9FIP3_ARATH,Q9FGP1_ARATH,O82168_ARATH,Q5BPS8_ARATH,Q1PE74_ARATH,F4JP70_ARATH,F4ISW5_ARATH Carboxyl-terminal proteinase-like protein, putative (DUF239),Carboxyl-terminal proteinase-like protein (DUF239) (Similarity to carboxyl-terminal proteinase),NEP-interacting protein, putative (DUF239) (Uncharacterized protein At2g35250),NEP-interacting protein, putative (DUF239),Carboxyl-terminal proteinase-like protein (DUF239),Uncharacterized protein 39473,39730,46418,38270,37122,41322,36201,24745 Carboxyl-terminal proteinase-like protein, putative (DUF239),Carboxyl-terminal proteinase-like protein (DUF239) (Similarity to carboxyl-terminal proteinase),NEP-interacting protein, putative (DUF239) (Uncharacterized protein At2g35250),NEP-interacting protein, putative (DUF239),Carboxyl-terminal proteinase-like protein (DUF239),Uncharacterized protein locus:2178595;,locus:2178525;,locus:2162055;,locus:2063374;,locus:2039649;,locus:2141025;,locus:2129126;,locus:504956064; AT5G46810,AT5G46820,AT5G46200,AT2G35250,AT2G27320,AT4G17860,AT4G17505,AT2G38255 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E3KT ERF1B Q8LDC8 ERF92_ARATH Ethylene-responsive transcription factor 1B (AtERF1B) (Ethylene-responsive element-binding factor 1B) (EREBP-1B) FUNCTION: Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato). {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}. 24695 Ethylene-responsive transcription factor 1B (AtERF1B) (Ethylene-responsive element-binding factor 1B) (EREBP-1B) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; jasmonic acid mediated signaling pathway [GO:0009867]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed, mostly in flowers and rosettes after ethylene treatment. {ECO:0000269|PubMed:11950980}. locus:2086223; AT3G23240 Transcription factor NA NA NA NA NA NA NA ENOG411E3KW ATL80,ATL8 Q9LM69,Q8LC69 ATL80_ARATH,ATL8_ARATH RING-H2 finger protein ATL80 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL80),RING-H2 finger protein ATL8 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL8) FUNCTION: May be involved in the early steps of the plant defense signaling pathway. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 20920,19919 RING-H2 finger protein ATL80 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL80),RING-H2 finger protein ATL8 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL8) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; cellular response to cold [GO:0070417]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of flower development [GO:0009909]; regulation of phosphate transport [GO:0010966]; response to chitin [GO:0010200],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2825708;,locus:2011686; AT1G20823,AT1G76410 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E3KQ Q9FI47 Q9FI47_ARATH Rubredoxin-like superfamily protein (Uncharacterized protein At5g51010) 17230 Rubredoxin-like superfamily protein (Uncharacterized protein At5g51010) integral component of membrane [GO:0016021]; iron ion binding [GO:0005506] locus:2157388; AT5G51010 Rubredoxin Os11g0528500 protein (Rubredoxin family protein, expressed) (cDNA clone:001-015-F04, full insert sequence) Q2R3B6 Q2R3B6_ORYSJ LOC_Os11g32500 Os11g0528500 OsJ_34098 OSNPB_110528500 ENOG411E3KP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0198500 protein Q94IV1 Q94IV1_ORYSJ B1046G12.22 Os01g0198500 OSNPB_010198500 P0419B01.34 ENOG411E3KS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF724) Os11g0552200 protein A0A0P0Y411 A0A0P0Y411_ORYSJ Os11g0552200 OSNPB_110552200 ENOG411E3KR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC6R Q9STQ0,Q8H1R7 FDL28_ARATH,FDL27_ARATH Putative F-box/FBD/LRR-repeat protein At4g26350,F-box/FBD/LRR-repeat protein At4g26340 49656,47300 Putative F-box/FBD/LRR-repeat protein At4g26350,F-box/FBD/LRR-repeat protein At4g26340 locus:2136844;,locus:2136834; AT4G26350,AT4G26340 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411DPUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gibberellin 20 oxidase Gibberellin 20 oxidase 2 (EC 1.14.11.-) (GA 20-oxidase 2) (Gibberellin C-20 oxidase 2) (Os20ox2) (Protein semidwarf-1),Os01g0883800 protein (Fragment) Q0JH50,A0A0P0VB97 GAOX2_ORYSJ,A0A0P0VB97_ORYSJ 20ox2 C20ox2 GA20 Sd-1 Os01g0883800 LOC_Os01g66100 B1065E10.46,Os01g0883800 OSNPB_010883800 FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA53 to GA20 via a three-step oxidation at C-20 of the GA skeleton. {ECO:0000269|PubMed:11961544}. MISCELLANEOUS: A second gene, 20ox1, is preferentially expressed in the reproductive organs and enables the flowers in sd1 plants to develop and be fertilized normally. ENOG411DPUB RPL13AD,RPL13AA,RPL13AB,RPL13AC Q9FKC0,Q9SFU1,Q9LRX8,Q9SVR0,F4JD96 R13A4_ARATH,R13A1_ARATH,R13A2_ARATH,R13A3_ARATH,F4JD96_ARATH 60S ribosomal protein L13a-4,60S ribosomal protein L13a-1,60S ribosomal protein L13a-2,60S ribosomal protein L13a-3,Ribosomal protein L13 family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 23590,23466,23459,23629,23594 60S ribosomal protein L13a-4,60S ribosomal protein L13a-1,60S ribosomal protein L13a-2,60S ribosomal protein L13a-3,Ribosomal protein L13 family protein cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],chloroplast [GO:0009507]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:2156569;,locus:2087268;,locus:2119335;,locus:2098530; AT5G48760,AT3G07110,AT3G24830,AT4G13170 60S ribosomal protein NA NA NA NA NA NA NA ENOG411DPUA TIO Q2QAV0 TIO_ARATH Serine/threonine-protein kinase TIO (EC 2.7.11.1) (Fused homolog) (AtFUSED) (Protein TWO-IN-ONE) (AtTIO) DISRUPTION PHENOTYPE: Cytokinesis-defective leading to aberrant pollen and embryo sacs. {ECO:0000269|PubMed:16332535, ECO:0000269|PubMed:22709276}. Mutant plants had binucleate mature pollen grains contrary to tricellular pollen in the wild type due to failure to undergo cytokinesis at pollen mitosis. Binucleate mutant pollen contained two free nuclei and remained uncellularized. Mature mutant embryo sacs showed various numbers (2 to 5) of nuclei located toward the micropylar pole without visible cellular boundaries. After fertilization mutant embryo sacs did not develop further and remained uncellularized. At early bicellular pollen stage approximately 1/3 of dividing microspores had incomplete callose walls which were correctly positioned at the generative cell pole but do not persist and are degraded before mid-bicellular pollen stage. Subsequently at mid-bicellular pollen stage when the generative cell nucleus is highly condensed in wild-type in approximately 1/3 of mutant pollen the smaller generative pole nucleus remains round and relatively uncondensed and does not divide further.,Mutant plants had binucleate mature pollen grains contrary to tricellular pollen in the wild type due to failure to undergo cytokinesis at pollen mitosis. Binucleate mutant pollen contained two free nuclei and remained uncellularized. Mature mutant embryo sacs showed various numbers (2 to 5) of nuclei located toward the micropylar pole without visible cellular boundaries. After fertilization mutant embryo sacs did not develop further and remained uncellularized. At early bicellular pollen stage approximately 1/2 of dividing microspores had incomplete callose walls which were correctly positioned at the generative cell pole but do not persist and are degraded before mid-bicellular pollen stage. Subsequently at mid-bicellular pollen stage when the generative cell nucleus is highly condensed in wild-type in approximately 1/2 of mutant pollen the smaller generative pole nucleus remains round and relatively uncondensed and does not divide further. Complete male gametophyte defective; Female gametophyte defective-D. Twell-2005 FUNCTION: Plays a role in conventional modes of cytokinesis in meristems and during male gametogenesis but also acts in nonconventional modes of cytokinesis (cellularization) during female gametogenesis. Constitutes a signaling module in association with Kinesin-12 members that is required to support phragmoplast expansion and cell-plate growth in plant cells. {ECO:0000269|PubMed:16332535, ECO:0000269|PubMed:22709276}. 2.7.11.1 145414 Serine/threonine-protein kinase TIO (EC 2.7.11.1) (Fused homolog) (AtFUSED) (Protein TWO-IN-ONE) (AtTIO) cytoskeleton [GO:0005856]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; kinesin binding [GO:0019894]; protein serine/threonine kinase activity [GO:0004674]; cytokinesis by cell plate formation [GO:0000911]; embryo sac cellularization [GO:0009558]; male meiosis cytokinesis [GO:0007112] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16332535}. locus:2011927; AT1G50240 S_TKc Os12g0433500 protein (Protein kinase domain containing protein, expressed) Q2QSC9 Q2QSC9_ORYSJ LOC_Os12g24550 Os12g0433500 OSNPB_120433500 ENOG411DPUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain NA NA NA NA NA NA NA ENOG411EC6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative ParB-like nuclease NA NA NA NA NA NA NA ENOG411DYXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family Os11g0645200 protein (Oxidoreductase, aldo/keto reductase family protein, expressed) (cDNA, clone: J065218G08, full insert sequence) Q2R0H5 Q2R0H5_ORYSJ Os11g0645200 LOC_Os11g42540 OSNPB_110645200 ENOG411DYXJ MZN1.11 Q9LUZ1,A0A1P8BED6,F4JAD4 Q9LUZ1_ARATH,A0A1P8BED6_ARATH,F4JAD4_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Gibberellin oxidase-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT5G58660-MONOMER; 39668,31171,37393 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Gibberellin oxidase-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:2178783;,locus:2075656; AT5G58660,AT3G47190 gibberellin 2-beta-dioxygenase Os04g0407800 protein A3ATL0 A3ATL0_ORYSJ Os04g0407800 OsJ_14701 OSNPB_040407800 ENOG411DYXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: GDSL esterase lipase At4g10955-like Lipase (Class 3) family-like protein (Os07g0528400 protein),Os07g0466000 protein,Os07g0527900 protein (Fragment),Os07g0528200 protein (Fragment) Q6Z6N3,A0A0P0X5M3,A0A0P0X795,A0A0P0X7N2 Q6Z6N3_ORYSJ,A0A0P0X5M3_ORYSJ,A0A0P0X795_ORYSJ,A0A0P0X7N2_ORYSJ Os07g0528400 OsJ_24526 OSJNBa0007H12.25 OSNPB_070528400,Os07g0466000 OSNPB_070466000,Os07g0527900 OSNPB_070527900,Os07g0528200 OSNPB_070528200 ENOG411DYXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1442) NA NA NA NA NA NA NA ENOG411DYX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0108800 protein (Putative cytochrome P450) (cDNA clone:J013123G02, full insert sequence) Q6ETT1 Q6ETT1_ORYSJ Os02g0108800 OsJ_05049 OSNPB_020108800 P0017C12.25 ENOG411DYX2 F4IPZ0 F4IPZ0_ARATH Transmembrane protein 49668 Transmembrane protein integral component of membrane [GO:0016021] locus:504955961; AT2G37035 NA Expressed protein (Os10g0478400 protein) Q7XDC6 Q7XDC6_ORYSJ LOC_Os10g33820 Os10g0478400 OsJ_31899 OSNPB_100478400 ENOG411DYX8 IPT4,IPT1,IPT6,IPT8 Q9SB60,Q94ID3,Q9C6L1,Q9LJL4 IPT4_ARATH,IPT1_ARATH,IPT6_ARATH,IPT8_ARATH Adenylate isopentenyltransferase 4 (AtIPT4) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 4) (Cytokinin synthase 4),Adenylate isopentenyltransferase 1, chloroplastic (AtIPT1) (EC 2.5.1.112) (EC 2.5.1.27) (Adenylate dimethylallyltransferase 1) (Cytokinin synthase 1),Adenylate isopentenyltransferase 6, chloroplastic (AtIPT6) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 6) (Cytokinin synthase 6),Adenylate isopentenyltransferase 8, chloroplastic (AtIPT8) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 8) (Cytokinin synthase 8) (Plant growth activator 22) DISRUPTION PHENOTYPE: No visible phenotype, due the redundancy with other IPTs. {ECO:0000269|PubMed:17062755}. Thin small plants.,No visible phenotype.,Decreased levels of isopentenyladenosine riboside (iPR) and isopentenyladenosine monophosphate (iPRMP) compared to wild type.,Increased levels of cis-zeatin riboside (cZR) and cis-zeatin riboside monophosphate (cZRMP) compared to wild type.,Decreases in free-base iP and tZ are moderate compared to those of the riboside and ribotide forms.,External application of trans-zeatin partially rescues the growth of aerial parts of the mutant and reduced its lateral root elongation.,Fewer rosette leaves than wild type indicating a prolonged plastochron.,Flowering time is delayed when grown on vermiculite but not on nutrient agar.,Indistinguishable from wild type in the early stages of development. Phenotypic differences become evident as the plant age.,Levels of iPRMP iPR tZRMP tZR. tZ-7-glucoside tZ-9-glucoside and tZ-O-glucoside are all reduced to less than 20% of those of wild type.,Rduced shoot apical meristem size and thin inflorescence stems.,Reduced cambial activity and reduced secondary growth in both shoots and roots.,Relative to wild type both the number of lateral roots (longer than 1cm) and the total length of the lateral roots are increased.,Short and thin aerial parts.,Some seeds are aborted but surviving ones are larger than those of wild type. FUNCTION: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP, but not to AMP. Has no DMAPP:tRNA isopentenyltransferase activity. {ECO:0000269|PubMed:15998742, ECO:0000269|PubMed:17062755}.,FUNCTION: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP, ADP and AMP. Adenine, adenosine, isopentenylpyrophosphate and 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBDP) are not used as substrates. {ECO:0000269|PubMed:17062755}.,FUNCTION: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP. {ECO:0000269|PubMed:11313355}.,FUNCTION: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP. {ECO:0000269|PubMed:11313355, ECO:0000269|PubMed:12529525, ECO:0000269|PubMed:17062755}. MISCELLANEOUS: Due to a nucleotide deletion that would cause a frameshift, IPT6 seems to be a pseudogene in cv. Wassilewskija. ARA:AT4G24650-MONOMER;MetaCyc:AT4G24650-MONOMER;,MetaCyc:AT1G68460-MONOMER;,ARA:AT3G19160-MONOMER;MetaCyc:AT3G19160-MONOMER; 2.5.1.112;,2.5.1.112;2.5.1.27; 2.5.1.112,2.5.1.112; 2.5.1.27 36674,40765,38363,37322 Adenylate isopentenyltransferase 4 (AtIPT4) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 4) (Cytokinin synthase 4),Adenylate isopentenyltransferase 1, chloroplastic (AtIPT1) (EC 2.5.1.112) (EC 2.5.1.27) (Adenylate dimethylallyltransferase 1) (Cytokinin synthase 1),Adenylate isopentenyltransferase 6, chloroplastic (AtIPT6) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 6) (Cytokinin synthase 6),Adenylate isopentenyltransferase 8, chloroplastic (AtIPT8) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 8) (Cytokinin synthase 8) (Plant growth activator 22) cytosol [GO:0005829]; mitochondrion [GO:0005739]; ADP dimethylallyltransferase activity [GO:0052623]; AMP dimethylallyltransferase activity [GO:0009824]; ATP binding [GO:0005524]; ATP dimethylallyltransferase activity [GO:0052622]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ADP dimethylallyltransferase activity [GO:0052623]; AMP dimethylallyltransferase activity [GO:0009824]; ATP binding [GO:0005524]; ATP dimethylallyltransferase activity [GO:0052622]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ADP dimethylallyltransferase activity [GO:0052623]; ATP binding [GO:0005524]; ATP dimethylallyltransferase activity [GO:0052622]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ADP dimethylallyltransferase activity [GO:0052623]; AMP dimethylallyltransferase activity [GO:0009824]; ATP binding [GO:0005524]; ATP dimethylallyltransferase activity [GO:0052622]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400] DEVELOPMENTAL STAGE: Expressed at the early stages of embryo development, up to the early heart stage. {ECO:0000269|PubMed:14675438}.,DEVELOPMENTAL STAGE: Expressed at the early stages of embryo development, up to the late heart stage. {ECO:0000269|PubMed:14675438}. TISSUE SPECIFICITY: Expressed in immature seeds with highest expression in the chalazal endosperm. {ECO:0000269|PubMed:14675438}.,TISSUE SPECIFICITY: Expressed in the vascular stele of the roots, in the xylem precursor cell files in the root tip, in leaf axils, ovules, and immature seeds. {ECO:0000269|PubMed:14675438, ECO:0000269|PubMed:15356331}.,TISSUE SPECIFICITY: Expressed in siliques, at the mRNA level. {ECO:0000269|PubMed:14675438}.,TISSUE SPECIFICITY: Expressed in roots and in immature seeds with highest expression in the chalazal endosperm. {ECO:0000269|PubMed:12529525, ECO:0000269|PubMed:14675438}. locus:2121979;,locus:2201292;,locus:2031205;,locus:2094128; AT4G24650,AT1G68460,AT1G25410,AT3G19160 Adenylate isopentenyltransferase Os07g0190150 protein A0A0P0X3E8 A0A0P0X3E8_ORYSJ Os07g0190150 OSNPB_070190150 ENOG411E828 Q9C673 Q9C673_ARATH Uncharacterized protein F28B23.5 17315 Uncharacterized protein F28B23.5 locus:2028782; AT1G26290 NA NA NA NA NA NA NA NA ENOG411EAT3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bestrophin RFP-TM chloride channel NA NA NA NA NA NA NA ENOG411EAT0 EDA1 Q9LRW6,Q9SLH9,Q9LQ46,Q9LJP0,Q9SCK7,Q9LID1,Q9CA02,Q9LHN6,Q9SA94,Q1PFG1,A0A1P8AWI0 FB142_ARATH,FB59_ARATH,FB67_ARATH,FB164_ARATH,FB199_ARATH,FBK54_ARATH,FB198_ARATH,FB141_ARATH,FB5_ARATH,FB74_ARATH,A0A1P8AWI0_ARATH F-box protein At3g13820,F-box protein At1g54550,F-box protein At1g59680,Putative F-box protein At3g19560,Putative F-box protein At3g49520,F-box/kelch-repeat protein At3g13680,F-box protein At3g49510,Putative F-box protein At3g13624,F-box protein At1g11810,F-box protein At1g66490,F-box associated ubiquitination effector family protein 47623,41793,41932,42007,45011,45172,44766,41738,42481,43092,35846 F-box protein At3g13820,F-box protein At1g54550,F-box protein At1g59680,Putative F-box protein At3g19560,Putative F-box protein At3g49520,F-box/kelch-repeat protein At3g13680,F-box protein At3g49510,Putative F-box protein At3g13624,F-box protein At1g11810,F-box protein At1g66490,F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2087984;,locus:2020168;,locus:2091241;,locus:2114663;,locus:2091491;,locus:2027357; AT3G13820,AT1G54550,AT1G59680,AT3G19560,AT3G49520,AT3G13680,AT3G49510,AT3G13624,AT1G11810,AT1G66490 F-box associated NA NA NA NA NA NA NA ENOG411EAT6 Q93ZK9,Q56YH2,A0A1P8B9D6,A0A1P8BDB9 FDL29_ARATH,FBD41_ARATH,A0A1P8B9D6_ARATH,A0A1P8BDB9_ARATH F-box/FBD/LRR-repeat protein At5g18770,FBD-associated F-box protein At5g18780,F-box/RNI-like superfamily protein,F-box/FBD-like domains containing protein 55718,50221,43241,43680 F-box/FBD/LRR-repeat protein At5g18770,FBD-associated F-box protein At5g18780,F-box/RNI-like superfamily protein,F-box/FBD-like domains containing protein chloroplast [GO:0009507] locus:2144895;,locus:2144905; AT5G18770,AT5G18780 NA F-box domain containing protein, expressed (Os10g0124700 protein) Q33BA9 Q33BA9_ORYSJ LOC_Os10g03620 Os10g0124700 OsJ_30585 OSNPB_100124700 ENOG411EAT4 F11F8_6 Q8LEV0,Q9SF54 Q8LEV0_ARATH,Q9SF54_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein,At3g09490 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein F11F8_6) 37263,38410 Tetratricopeptide repeat (TPR)-like superfamily protein,At3g09490 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein F11F8_6) plasma membrane [GO:0005886],chloroplast thylakoid lumen [GO:0009543]; photosynthesis, light reaction [GO:0019684] locus:2181848;,locus:2074969; AT5G02590,AT3G09490 Inherit from NOG: repeat protein NA NA NA NA NA NA NA ENOG411EAT8 UGT74D1 Q9SKC5,A0A1P8B2S3 U74D1_ARATH,A0A1P8B2S3_ARATH UDP-glycosyltransferase 74D1 (EC 2.4.1.-) (Jasmonate glucosyltransferase 1) (AtJGT1),UDP-glucosyl transferase 74D1 FUNCTION: Glucosyltransferase that glucosylates jasmonate (JA) and JA derivatives. Also active on indole-3-acetic acid (IAA), 4-coumrate, cinnamate and caffeate. {ECO:0000269|Ref.1}. ARA:AT2G31750-MONOMER; 2.4.1.- 51053,54920 UDP-glycosyltransferase 74D1 (EC 2.4.1.-) (Jasmonate glucosyltransferase 1) (AtJGT1),UDP-glucosyl transferase 74D1 intracellular membrane-bounded organelle [GO:0043231]; indole-3-butyrate beta-glucosyltransferase activity [GO:0052638]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; auxin metabolic process [GO:0009850],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|Ref.1}. locus:2045238; AT2G31750 UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EATR A0A178VGS0,B2GVM5 A0A178VGS0_ARATH,B2GVM5_ARATH Transmembrane protein,At3g13420 (Transmembrane protein) 29357,27142 Transmembrane protein,At3g13420 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2092885; AT3G13420 NA NA NA NA NA NA NA NA ENOG411EATS RH12 Q9M2E0 RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 (EC 3.6.4.13) FUNCTION: ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping. {ECO:0000250}. R-ATH-430039; 3.6.4.13 56775 DEAD-box ATP-dependent RNA helicase 12 (EC 3.6.4.13) cytoplasmic stress granule [GO:0010494]; nucleolus [GO:0005730]; P-body [GO:0000932]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; cytoplasmic mRNA processing body assembly [GO:0033962]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; regulation of translation [GO:0006417]; RNA secondary structure unwinding [GO:0010501] locus:2098886; AT3G61240 DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411EATP ERF036 Q9LU18,A0A1I9LT94 ERF36_ARATH,A0A1I9LT94_ARATH Ethylene-responsive transcription factor ERF036,Integrase-type DNA-binding superfamily protein FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 26205,28471 Ethylene-responsive transcription factor ERF036,Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2094897; AT3G16280 AP2 NA NA NA NA NA NA NA ENOG411EATQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromo (CHRromatin Organisation MOdifier) domain Os06g0497600 protein (Fragment) A0A0P0WXD4 A0A0P0WXD4_ORYSJ Os06g0497600 OSNPB_060497600 ENOG411EATV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Piwi Os07g0265600 protein (Fragment) A0A0N7KN85 A0A0N7KN85_ORYSJ Os07g0265600 OSNPB_070265600 ENOG411EATW BRN1,BRN2,AtBRN2 Q8LFS6,Q8GZ26,A0A1P8AVL3,F4I0X0 BRN1L_ARATH,BRN2L_ARATH,A0A1P8AVL3_ARATH,F4I0X0_ARATH RNA-binding protein BRN1 (Protein BRUNO-LIKE 1) (AtBRN1) (Protein RNA-BINDING PROTEIN-DEFENSE RELATED 1) (AtRBP-DR1),RNA-binding protein BRN2 (Protein BRUNO-LIKE 2) (AtBRN2),RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show enhanced susceptibility to the pathogen Pseudomonas syringae pv. tomato DC3000. {ECO:0000269|PubMed:20636102}. Allowed significantly more growth of Pto DC3000 than wild-type plants. Susceptible to bacterial infection-F. Katagiri-2010 FUNCTION: RNA-binding protein involved in the regulation of flowering time. Acts as repressor of the activity of SOC1, a transcriptional activator of flowering time. Binds to the 3'-UTR of SOC1 mRNA in the cytoplasm and participates in SOC1 mRNA decay, mediated by the distal region of the SOC1 3'-UTR (PubMed:23437850). Acts as positive regulator of salicylic acid (SA)-mediated immunity. May act on SA signaling-related genes at a post-transcriptional level (PubMed:20636102). {ECO:0000269|PubMed:20636102, ECO:0000269|PubMed:23437850}.,FUNCTION: RNA-binding protein involved in the regulation of flowering time. Acts as repressor of the activity of SOC1, a transcriptional activator of flowering time. Binds to the 3'-UTR of SOC1 mRNA in the cytoplasm and participates in SOC1 mRNA decay, mediated by the distal region of the SOC1 3'-UTR. {ECO:0000269|PubMed:23437850}. 48199,47623,35620,48571 RNA-binding protein BRN1 (Protein BRUNO-LIKE 1) (AtBRN1) (Protein RNA-BINDING PROTEIN-DEFENSE RELATED 1) (AtRBP-DR1),RNA-binding protein BRN2 (Protein BRUNO-LIKE 2) (AtBRN2),RNA-binding (RRM/RBD/RNP motifs) family protein cytoplasm [GO:0005737]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; flower development [GO:0009908]; mRNA catabolic process [GO:0006402]; plant-type hypersensitive response [GO:0009626]; positive regulation of salicylic acid mediated signaling pathway [GO:0080151]; regulation of photoperiodism, flowering [GO:2000028],cytoplasm [GO:0005737]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; flower development [GO:0009908]; mRNA catabolic process [GO:0006402]; photoperiodism, flowering [GO:0048573]; regulation of photoperiodism, flowering [GO:2000028],RNA binding [GO:0003723],mRNA binding [GO:0003729]; photoperiodism, flowering [GO:0048573] TISSUE SPECIFICITY: Highly expressed in stems and cauline leaves, and at lower levels in siliques, flowers, roots and rosette leaves. {ECO:0000269|PubMed:23437850}.,TISSUE SPECIFICITY: Expressed in roots, stems, flowers and siliques. {ECO:0000269|PubMed:23437850}. locus:2139340;,locus:2825067; AT4G03110,AT1G03457 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EATT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EATU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: M protein repeat protein NA NA NA NA NA NA NA ENOG411EATZ FLXL4,FLL4 Q9FH51,A0A1P8BFA1 FLXL4_ARATH,A0A1P8BFA1_ARATH Protein FLX-like 4 (AtFLXL4),FLX-like protein DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:23864009}. FUNCTION: Involved in FLC activation and flowering time control, but has no transcriptional activation activity. Probably part of the FRI-C complex, but is not redundant with FLX. {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. 27086,22642 Protein FLX-like 4 (AtFLXL4),FLX-like protein cell differentiation [GO:0030154]; flower development [GO:0009908] locus:2156146; AT5G61920 NA NA NA NA NA NA NA NA ENOG411EATX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EATY CNGC12,CNGC11 Q8GWD2,Q9SKD6,F4II93,F4II92 CNG12_ARATH,CNG11_ARATH,F4II93_ARATH,F4II92_ARATH Probable cyclic nucleotide-gated ion channel 12 (Cyclic nucleotide- and calmodulin-regulated ion channel 12),Cyclic nucleotide-gated ion channel 11 (Cyclic nucleotide- and calmodulin-regulated ion channel 11),Cyclic nucleotide-gated channel 12 FUNCTION: Probable cyclic nucleotide-gated ion channel.,FUNCTION: Putative cyclic nucleotide-gated ion channel. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 74806,71475,70389,71989 Probable cyclic nucleotide-gated ion channel 12 (Cyclic nucleotide- and calmodulin-regulated ion channel 12),Cyclic nucleotide-gated ion channel 11 (Cyclic nucleotide- and calmodulin-regulated ion channel 11),Cyclic nucleotide-gated channel 12 integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cation channel activity [GO:0005261]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; defense response [GO:0006952]; regulation of membrane potential [GO:0042391]; response to bacterium [GO:0009617]; response to fungus [GO:0009620],integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; defense response [GO:0006952]; regulation of membrane potential [GO:0042391]; response to bacterium [GO:0009617]; response to fungus [GO:0009620],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] locus:2039114;,locus:2039099; AT2G46450,AT2G46440 Ion transport protein NA NA NA NA NA NA NA ENOG411EATA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha-amyl_C2 Alpha-amylase isozyme 3E (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase),Alpha-amylase isozyme 3C (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase),Alpha-amylase isozyme 3B (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase),Alpha-amylase (EC 3.2.1.1) P27934,P27939,P27937,Q5QLB1 AMY3E_ORYSJ,AMY3C_ORYSJ,AMY3B_ORYSJ,Q5QLB1_ORYSJ AMY1.4 AMY3E Os08g0473600 LOC_Os08g36900 P0013B04.34-1 P0451G12.3-1,AMY1.7 AMY3B Os09g0457800 LOC_Os09g28420 LOC_Os09g28430 B1045B05.11 OsJ_29632,AMY1.6 AMY3B Os09g0457600 LOC_Os09g28420 B1045B05.10 OsJ_29630,P0013B04.36-2 Os08g0473900 P0451G12.5-2 OSNPB_080473900 FUNCTION: Important for breakdown of endosperm starch during germination. MISCELLANEOUS: Binds starch not only at the active site, but also via accessory binding sites on the protein surface that are important for efficient binding to starch granules and thereby increase enzyme activity. {ECO:0000250}. ENOG411EATE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os08g0210300 protein (Fragment) A0A0P0XDW3 A0A0P0XDW3_ORYSJ Os08g0210300 OSNPB_080210300 ENOG411EATJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EATK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EATH O04510,A0A1P8AV46,A0A1P8AV80,A0A1P8AV55 O04510_ARATH,A0A1P8AV46_ARATH,A0A1P8AV80_ARATH,A0A1P8AV55_ARATH F21M12.27 protein (Rhamnogalacturonate lyase family protein),Rhamnogalacturonate lyase family protein 72389,81955,80338,76451 F21M12.27 protein (Rhamnogalacturonate lyase family protein),Rhamnogalacturonate lyase family protein carbohydrate binding [GO:0030246]; lyase activity [GO:0016829]; carbohydrate metabolic process [GO:0005975] locus:2024417; AT1G09880 Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411EATI Q9FJJ4,Q9LV12 FB298_ARATH,FB299_ARATH F-box protein At5g62510,Putative F-box protein At5g62660 48132,43364 F-box protein At5g62510,Putative F-box protein At5g62660 locus:2154169;,locus:2172239; AT5G62510,AT5G62660 F-box associated domain NA NA NA NA NA NA NA ENOG411EATN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EATM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferases group 1 NA NA NA NA NA NA NA ENOG411EG40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain Os06g0476800 protein,Os10g0157000 protein Q69TS5,A0A0P0XSV6 Q69TS5_ORYSJ,A0A0P0XSV6_ORYSJ OSJNBa0026P23.12 Os06g0476800 OSNPB_060476800,Os10g0157000 OSNPB_100157000 ENOG411EG41 O48526 O48526_ARATH Expressed protein (Rho GTPase-activating gacO-like protein) (Uncharacterized protein At2g42190) 16027 Expressed protein (Rho GTPase-activating gacO-like protein) (Uncharacterized protein At2g42190) locus:2059964; AT2G42190 NA NA NA NA NA NA NA NA ENOG411EG48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0140300 protein) (cDNA clone:J033083A02, full insert sequence),Os11g0138000 protein (Os11g0138050 protein),Os11g0144600 protein Q2QXX2,A0A0P0XYK6,A0A0P0XYZ4 Q2QXX2_ORYSJ,A0A0P0XYK6_ORYSJ,A0A0P0XYZ4_ORYSJ Os12g0140300 LOC_Os12g04610 Os12g0140300 OSNPB_120140300,Os11g0138000 Os11g0138050 OSNPB_110138000 OSNPB_110138050,Os11g0144600 OSNPB_110144600 ENOG411EG49 Q6NMD7,Q9T077 Q6NMD7_ARATH,Q9T077_ARATH At5g53895,At4g27530 (Uncharacterized protein At4g27530) 13496,13548 At5g53895,At4g27530 (Uncharacterized protein At4g27530) locus:504954985;,locus:2137682; AT5G53895,AT4G27530 NA NA NA NA NA NA NA NA ENOG411EG4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Non-specific lipid-transfer protein C6 (OsC6) Q2R222 C6_ORYSJ C6 Os11g0582500 LOC_Os11g37280 OsJ_34386 FUNCTION: Lipid-transfer proteins that possesses lipid-binding activity in vitro. Involved in the development of lipidic orbicules/Ubisch bodies and pollen exine during anther development (PubMed:20610705). May be regulated by the transcription factor UDT1 in developing anthers and play a role in tapetum development (PubMed:16141453). Positively regulated by the transcription factor TDR in developing anthers and may play a role in tapetum programmed cell death (PCD) (PubMed:17138695). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:20610705}. ENOG411EG4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EG4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: CACTA En Spm sub-class Os05g0359000 protein A0A0P0WL72 A0A0P0WL72_ORYSJ Os05g0359000 OSNPB_050359000 ENOG411EG4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein light chain type 1 NA NA NA NA NA NA NA ENOG411EG4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein Os04g0273100 protein (Fragment) Q0JEH4 Q0JEH4_ORYSJ Os04g0273100 Os04g0273100 OSNPB_040273100 ENOG411EG4G AGP6,AGP11 Q9LY91,Q9FVE0 AGP6_ARATH,AGP11_ARATH Classical arabinogalactan protein 6,Classical arabinogalactan protein 11 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death (By similarity). Plays an important role during the formation of the nexine layer of the pollen wall (PubMed:25336567). {ECO:0000250, ECO:0000269|PubMed:25336567}.,FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 14569,12992 Classical arabinogalactan protein 6,Classical arabinogalactan protein 11 anchored component of membrane [GO:0031225]; extracellular matrix [GO:0031012]; plasma membrane [GO:0005886]; pollen tube growth [GO:0009860]; pollen wall assembly [GO:0010208],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; pollen tube growth [GO:0009860] DEVELOPMENTAL STAGE: Initially detected in the tapetum and microsporocytes during meiosis. Highest expression during the tetrad stage. After microspores were released from tetrad, slightly detected in the tapetum and microspores. {ECO:0000269|PubMed:25336567}. TISSUE SPECIFICITY: Expressed in the anthers. {ECO:0000269|PubMed:25336567}. locus:2145713;,locus:2082294; AT5G14380,AT3G01700 NA NA NA NA NA NA NA NA ENOG411EG4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411E82N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ArfGap NA NA NA NA NA NA NA ENOG411E6AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) Os01g0567400 protein Q0JLU6 Q0JLU6_ORYSJ Os01g0567400 Os01g0567400 OsJ_02265 OSNPB_010567400 ENOG411E71I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Zinc finger FYVE domain containing 26 NA NA NA NA NA NA NA ENOG411E71H EMB1303 Q9C7J5,A8MS46 Q9C7J5_ARATH,A8MS46_ARATH At1g56200/F14G9_26 (Embryo defective 1303) (Uncharacterized protein F14G9.26),Embryo defective 1303 Embryo defective; Cotyledon-D. Meinke-2003 15988,15702 At1g56200/F14G9_26 (Embryo defective 1303) (Uncharacterized protein F14G9.26),Embryo defective 1303 chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; regulation of chlorophyll metabolic process [GO:0090056]; thylakoid membrane organization [GO:0010027],integral component of membrane [GO:0016021] locus:2011836; AT1G56200 NA NA NA NA NA NA NA NA ENOG411E71G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E71D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxin-dependent bilin reductase NA NA NA NA NA NA NA ENOG411E71Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E71X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E71W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0258000 protein Q6ETP6 Q6ETP6_ORYSJ P0613F08.41 Os02g0258000 OSNPB_020258000 ENOG411E71V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM domain NA NA NA NA NA NA NA ENOG411E71U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0538000 protein (cDNA clone:001-006-H04, full insert sequence) (cDNA clone:001-124-G04, full insert sequence) (cDNA clone:J023150A20, full insert sequence),Os01g0538000 protein (cDNA clone:006-204-G09, full insert sequence),Os05g0100100 protein (cDNA, clone: J065161O13, full insert sequence),Os01g0539900 protein (Fragment) Q8GSX7,B7E5N6,B7F8T1,A0A0P0V3N5 Q8GSX7_ORYSJ,B7E5N6_ORYSJ,B7F8T1_ORYSJ,A0A0P0V3N5_ORYSJ B1166B08.10-1 Os01g0538000 OsJ_02117 OSNPB_010538000,Os01g0538000 OSNPB_010538000,Os05g0100100 Os05g0100100 OSNPB_050100100,Os01g0539900 OSNPB_010539900 ENOG411E71S Q8LDK3 NDUB2_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. 7568 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 mitochondrial respiratory chain complex I [GO:0005747]; oxidation-reduction process [GO:0055114] locus:2199792; AT1G76200 NA BLE1 protein (Os05g0122900 protein) (cDNA clone:001-121-F11, full insert sequence) (cDNA clone:J023084I21, full insert sequence) (cDNA clone:J033056C02, full insert sequence),Os06g0725400 protein (Putative BLE1 protein) (cDNA, clone: J065114J19, full insert sequence) Q75L86,Q5Z979 Q75L86_ORYSJ,Q5Z979_ORYSJ Os05g0122900 Os05g0122900 OJ1729_E02.8 OsJ_16944 OSNPB_050122900,Os06g0725400 Os06g0725400 OsJ_22706 OSNPB_060725400 P0548E04.15 ENOG411E71P LEA2,SAG21 Q9SRX6,Q93WF6,A0A1P8B4A1 LEA2_ARATH,SAG21_ARATH,A0A1P8B4A1_ARATH Late embryogenis abundant protein 2,Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial (Late embryogenesis abundant like 5) (AtLEA5) (Late embryogenis abundant protein 38),Senescence-associated gene 21 DISRUPTION PHENOTYPE: Early flowering and senescence, as well as reduced shoot biomass. Short primary root with reduced lateral root formation and short root hairs. Enhanced sensitivity to the fungal nectroph, Botrytis cinerea and to the virulent bacterial pathogen Pseudomonas syringae pv. tomato, but normal resistance to an avirulent P.syringae strain. {ECO:0000269|PubMed:21736589}. FUNCTION: Mediates tolerance to oxidative stresses (e.g. hydrogen peroxide H(2)O(2), diamide, menadione and tert-butyl hydroperoxide) by minimizing the negative effects of oxidation and monitoring photosynthesis during stress (PubMed:17092320). Promotes root development. Prevents premature aging (e.g. senescence and flowering). Involved in resistance against compatible pathogens such as Botrytis cinerea and Pseudomonas syringae pv. tomato (PubMed:21736589). {ECO:0000269|PubMed:17092320, ECO:0000269|PubMed:21736589}. 9827,10292,21097 Late embryogenis abundant protein 2,Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial (Late embryogenesis abundant like 5) (AtLEA5) (Late embryogenis abundant protein 38),Senescence-associated gene 21 cytosol [GO:0005829]; nucleus [GO:0005634]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],mitochondrion [GO:0005739]; cellular response to water deprivation [GO:0042631]; defense response [GO:0006952]; leaf senescence [GO:0010150]; regulation of defense response to bacterium [GO:1900424]; regulation of defense response to fungus [GO:1900150]; regulation of leaf senescence [GO:1900055]; regulation of photoperiodism, flowering [GO:2000028]; response to abscisic acid [GO:0009737]; response to absence of light [GO:0009646]; response to cold [GO:0009409]; response to ethylene [GO:0009723]; response to fungus [GO:0009620]; response to hydrogen peroxide [GO:0042542]; response to insect [GO:0009625]; response to light stimulus [GO:0009416]; response to oxidative stress [GO:0006979]; response to reactive oxygen species [GO:0000302]; response to salt [GO:1902074]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; root development [GO:0048364],response to stress [GO:0006950] DEVELOPMENTAL STAGE: Accumulates and reach a peak shortly before full senescence, at the interface between the green and yellow regions of senescent leaves, and then declines (PubMed:9617813, PubMed:21736589). In flowers, restricted to the pollen and very weak expression in petal veins. In dark-treated seedlings, strongly expressed throughout the root tissues, including root hairs, except in primary and lateral root tips (PubMed:21736589). {ECO:0000269|PubMed:21736589, ECO:0000269|PubMed:9617813}. TISSUE SPECIFICITY: Expressed in roots, stems leaves and flowers, but not in seeds (PubMed:17092320). In short days, observed in cotyledons and roots but absent from rosette leaves (PubMed:21736589). {ECO:0000269|PubMed:17092320, ECO:0000269|PubMed:21736589}. locus:2024735;,locus:2133279; AT1G02820,AT4G02380 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EHPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPK F4IP00 F4IP00_ARATH Uncharacterized protein 12773 Uncharacterized protein locus:1006230009; AT2G36695 NA NA NA NA NA NA NA NA ENOG411EHPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPOLCX Os01g0530366 protein (Os05g0151800 protein) B9EXB4 B9EXB4_ORYSJ Os01g0530366 Os05g0151800 OsJ_02072 OSNPB_010530366 ENOG411EHPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPH A0A1P8AQ75,A0A1P8AQ67,A0A1P8AQ97,A0A1P8AQ79,A0A1P8AQ91 A0A1P8AQ75_ARATH,A0A1P8AQ67_ARATH,A0A1P8AQ97_ARATH,A0A1P8AQ79_ARATH,A0A1P8AQ91_ARATH Uncharacterized protein 15492,40360,34247,39917,36156 Uncharacterized protein metal ion binding [GO:0046872] Inherit from NOG: G protein-coupled receptor associated sorting protein NA NA NA NA NA NA NA ENOG411EHPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0457400 protein A0A0P0WB57 A0A0P0WB57_ORYSJ Os04g0457400 OSNPB_040457400 ENOG411EHPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0228900 protein,Os07g0189200 protein Q53Q47,A0A0P0X3B1 Q53Q47_ORYSJ,A0A0P0X3B1_ORYSJ Os11g0228900 LOC_Os11g12280 OSNPB_110228900,Os07g0189200 OSNPB_070189200 ENOG411EHPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0105050 protein A0A0P0WGW6 A0A0P0WGW6_ORYSJ Os05g0105050 OSNPB_050105050 ENOG411EHPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0272600 protein (cDNA clone:001-122-C04, full insert sequence) Q6H4Y7 Q6H4Y7_ORYSJ Os09g0272600 Os09g0272600 OJ1031_C12.5 OSNPB_090272600 P0515A04.30 ENOG411EHPA A0A1P8B3H9 A0A1P8B3H9_ARATH Superoxide dismutase 1 copper chaperone-like protein 13462 Superoxide dismutase 1 copper chaperone-like protein metal ion binding [GO:0046872]; metal ion transport [GO:0030001] NA NA NA NA NA NA NA NA ENOG411EHPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA trypsin inhibitor NA NA NA NA NA NA NA ENOG411EHPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3673) NA NA NA NA NA NA NA ENOG411EHPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0363600 protein (Fragment) A0A0P0XM00 A0A0P0XM00_ORYSJ Os09g0363600 OSNPB_090363600 ENOG411EHPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTPaselike protein NA NA NA NA NA NA NA ENOG411EHPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0183850 protein A0A0P0UZN4 A0A0P0UZN4_ORYSJ Os01g0183850 OSNPB_010183850 ENOG411EHP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHP6 Q84VG8,A0A1I9LP10,A0A1I9LP11,F4J2C0 Q84VG8_ARATH,A0A1I9LP10_ARATH,A0A1I9LP11_ARATH,F4J2C0_ARATH At5g55507 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At5g55507),Hydroxyproline-rich glycoprotein family protein 10856,21199,21971,17783 At5g55507 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At5g55507),Hydroxyproline-rich glycoprotein family protein metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:504954867;,locus:504955858; AT5G55507,AT3G03776 NA NA NA NA NA NA NA NA ENOG411EHP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metallothionein-like protein 2C (Class I metallothionein-like protein 2C) (OsMT-I-2c) (OsMT2b),Metallothionein-like protein 2B (Class I metallothionein-like protein 2B) (OsMT-I-2b) (OsMT2c),Os05g0111300 protein A3AZ88,Q5JM82,A0A0P0WH30 MT2C_ORYSJ,MT2B_ORYSJ,A0A0P0WH30_ORYSJ MT2C MTE Os05g0111300 LOC_Os05g02070 OsJ_016110 P0016H04.13,MT2B RICMT Os01g0974200 LOC_Os01g74300 OsJ_04949 P0698H10.31-1,Os05g0111300 OSNPB_050111300 FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals (Probable). Acts as reactive oxygen species (ROS) scavenger in the cytosol. Possesses superoxide anion and hydroxyl radical scavenging activities in vitro (PubMed:15220467). Plays a role during root development, lateral root initiation and seed embryo germination, possibly by regulating levels of cytokinin (PubMed:18258694). {ECO:0000269|PubMed:15220467, ECO:0000269|PubMed:18258694, ECO:0000305}.,FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals. {ECO:0000305}. MISCELLANEOUS: Down-regulation by RAC1 during pathogen infection may potentiate ROS which function as signals in resistance response (PubMed:15220467). Plants silencing MT2C show abnormal plant growth and root formation (PubMed:18258694). {ECO:0000269|PubMed:15220467, ECO:0000269|PubMed:18258694}. ENOG411EHP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone deacetylase domain NA NA NA NA NA NA NA ENOG411EHP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5TJ VHA-e1,VHA-e2 Q9FLN5,Q9SZ13 VA0E1_ARATH,VA0E2_ARATH V-type proton ATPase subunit e1 (V-ATPase subunit e1) (Vacuolar H(+)-ATPase subunit e isoform 1) (Vacuolar proton pump subunit e1),V-type proton ATPase subunit e2 (V-ATPase subunit e2) (Vacuolar H(+)-ATPase subunit e isoform 2) (Vacuolar proton pump subunit e2) FUNCTION: Subunit of the integral membrane V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By similarity). {ECO:0000250}. 7726,7685 V-type proton ATPase subunit e1 (V-ATPase subunit e1) (Vacuolar H(+)-ATPase subunit e isoform 1) (Vacuolar proton pump subunit e1),V-type proton ATPase subunit e2 (V-ATPase subunit e2) (Vacuolar H(+)-ATPase subunit e isoform 2) (Vacuolar proton pump subunit e2) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991] locus:2161625;,locus:2116392; AT5G55290,AT4G26710 ATP synthase subunit H OSJNBa0015K02.15 protein (Os04g0660600 protein) Q7XQZ9 Q7XQZ9_ORYSJ Os04g0660600 OsJ_16494 OSJNBa0015K02.15 OSNPB_040660600 ENOG411EJ2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rtr1/RPAP2 family NA NA NA NA NA NA NA ENOG411E473 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen-specific protein OSJNBa0039C07.14 protein (Os04g0398700 protein) Q7XLG2 Q7XLG2_ORYSJ Os04g0398700 Os04g0398700 OsJ_14643 OSJNBa0039C07.14 OSNPB_040398700 ENOG411EKEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EKEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arsenite-resistance protein 2 Os08g0517300 protein (Putative C2H2 zinc-finger protein) (cDNA clone:J023007J12, full insert sequence),Os08g0517300 protein Q7EZ93,A0A0P0XI42 Q7EZ93_ORYSJ,A0A0P0XI42_ORYSJ P0686C03.151 P0700D12.110 Os08g0517300 OsJ_27936 OSNPB_080517300,Os08g0517300 OSNPB_080517300 ENOG411EKEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridine nucleotide-disulphide oxidoreductase Os11g0158200 protein (Pyridine nucleotide-disulphide oxidoreductase family protein, putative) Q2RAB3 Q2RAB3_ORYSJ Os11g0158200 LOC_Os11g05970 Os11g0158200 OsJ_33040 OSNPB_110158200 ENOG411EKEU Q94CB2,C0Z2H2,A0A1P8B3F9 Q94CB2_ARATH,C0Z2H2_ARATH,A0A1P8B3F9_ARATH Paramyosin-like protein (Uncharacterized protein At4g32560),AT4G32560 protein (Paramyosin-like protein),Paramyosin-like protein 35029,34787,32115 Paramyosin-like protein (Uncharacterized protein At4g32560),AT4G32560 protein (Paramyosin-like protein),Paramyosin-like protein Golgi to plasma membrane transport [GO:0006893] locus:2131332; AT4G32560 NA NA NA NA NA NA NA NA ENOG411EKES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 Os08g0296900 protein (Putative octicosapeptide/Phox/Bem1p (PB1) domain-/tetratricopeptide repeat (TPR)-containing protein) (cDNA clone:J033046B22, full insert sequence),Os08g0296900 protein Q69QX2,A0A0P0XEE9 Q69QX2_ORYSJ,A0A0P0XEE9_ORYSJ P0024C06.105-1 Os08g0296900 OSNPB_080296900,Os08g0296900 OSNPB_080296900 ENOG411EKER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 NA NA NA NA NA NA NA ENOG411EKEJ RUP1 Q9LTJ6 RUP1_ARATH WD repeat-containing protein RUP1 (Protein EARLY FLOWERING BY OVEREXPRESSION 1) (Protein REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21242318}. Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. FUNCTION: Functions in association with RUP2 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Plays a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development. {ECO:0000269|PubMed:21041653, ECO:0000269|PubMed:21242318}. MISCELLANEOUS: Overexpression of RUP1 confers an early flowering phenotype. {ECO:0000305|PubMed:21242318}. 41997 WD repeat-containing protein RUP1 (Protein EARLY FLOWERING BY OVEREXPRESSION 1) (Protein REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; nucleus [GO:0005634]; flower development [GO:0009908]; regulation of protein homodimerization activity [GO:0043496]; response to far red light [GO:0010218]; response to red light [GO:0010114]; response to UV-B [GO:0010224] locus:2145111; AT5G52250 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKEA FZR3 Q8LPL5 FZR3_ARATH Protein FIZZY-RELATED 3 (Cell cycle switch protein CCS52B) FUNCTION: Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). {ECO:0000269|PubMed:15970679}. MISCELLANEOUS: FZR2 controls the induction of early rounds of endoreduplication while the remaining rounds may be mediated by FZR1 and FZR3. PATHWAY: Protein modification; protein ubiquitination. R-ATH-176408;R-ATH-68949;R-ATH-69656; 52378 Protein FIZZY-RELATED 3 (Cell cycle switch protein CCS52B) anaphase-promoting complex binding [GO:0010997]; ubiquitin-protein transferase activator activity [GO:0097027]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein ubiquitination [GO:0016567] DEVELOPMENTAL STAGE: Expressed during G2/M and M phases. {ECO:0000269|PubMed:15970679}. locus:2159078; AT5G13840 FIZZY-related NA NA NA NA NA NA NA ENOG411EKE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA anaphase-promoting complex subunit cdc20-like NA NA NA NA NA NA NA ENOG411EKE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSA NA NA NA NA NA NA NA ENOG411E3BU T16L24.230 Q9M1A0,F4J9E8 Q9M1A0_ARATH,F4J9E8_ARATH At3g59680 (Serine/Threonine-kinase) (Uncharacterized protein At3g59680) (Uncharacterized protein T16L24.230),Serine/Threonine-kinase 23193,26485 At3g59680 (Serine/Threonine-kinase) (Uncharacterized protein At3g59680) (Uncharacterized protein T16L24.230),Serine/Threonine-kinase kinase activity [GO:0016301] locus:2097463; AT3G59680 expressed protein Os04g0495900 protein (cDNA clone:006-311-D02, full insert sequence),Os01g0393300 protein (Fragment) Q0JC26,A0A0P0V2Z6 Q0JC26_ORYSJ,A0A0P0V2Z6_ORYSJ Os04g0495900 Os04g0495900 OSNPB_040495900,Os01g0393300 OSNPB_010393300 ENOG411E3BF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0542000 protein A0A0P0XXD2 A0A0P0XXD2_ORYSJ Os10g0542000 OSNPB_100542000 ENOG411E3BD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0601500 protein A0A0P0WEF0 A0A0P0WEF0_ORYSJ Os04g0601500 OSNPB_040601500 ENOG411E1QZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) NA NA NA NA NA NA NA ENOG411E1QM Q9M0E1 FBL77_ARATH F-box/LRR-repeat protein At4g29420 50879 F-box/LRR-repeat protein At4g29420 plasmodesma [GO:0009506]; cytokinin-activated signaling pathway [GO:0009736]; hormone transport [GO:0009914] locus:2118304; AT4G29420 F-box LRR-repeat protein Os01g0193500 protein Q0JPY3 Q0JPY3_ORYSJ Os01g0193500 Os01g0193500 OSNPB_010193500 ENOG411E1QJ Q9LQ29 Q9LQ29_ARATH Protein kinase superfamily protein (Uncharacterized protein F14M2.11) R-ATH-674695;R-ATH-6796648; 68468 Protein kinase superfamily protein (Uncharacterized protein F14M2.11) nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468] locus:2012643; AT1G33770 S_TKc NA NA NA NA NA NA NA ENOG411DY4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell into the endoplasmic reticulum or into organelles (By similarity) Calcium-transporting ATPase 10, plasma membrane-type (OsACA10) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10) (Plastid envelope ATPase 1),Calcium-transporting ATPase 3, plasma membrane-type (OsACA3) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 3),Os12g0586600 protein (Fragment),Os03g0616400 protein (Fragment) Q2QMX9,Q6ATV4,A0A0P0YBQ1,A0A0P0W110 ACA10_ORYSJ,ACA3_ORYSJ,A0A0P0YBQ1_ORYSJ,A0A0P0W110_ORYSJ ACA10 Os12g0586600 LOC_Os12g39660 OsJ_36685,ACA3 Os03g0616400 LOC_Os03g42020 OJ1285_H07.3,Os12g0586600 OSNPB_120586600,Os03g0616400 OSNPB_030616400 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles. {ECO:0000250}. ENOG411DY4D ADK Q9ZUU1,Q84JF7 KAD1_ARATH,KAD6C_ARATH Adenylate kinase 1, chloroplastic (AK 1) (AtPADK1) (EC 2.7.4.3) (ATP-AMP transphosphorylase 1) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 1) (AMK1),Probable adenylate kinase 6, chloroplastic (EC 2.7.4.3) (ATP-AMP transphosphorylase 6) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 6) (AMK6) DISRUPTION PHENOTYPE: Enhanced root growth and increased amino acid biosynthetis in the light period. {ECO:0000269|PubMed:15618410}. After 2 d in continuous light the total aerial biomass accumulated by the mutant was 40% higher than the wild type. In normal photoperiod and continuous light both the wild type and mutants developed to the reproductive stage synchronically but in darkness the mutant plants showed a delay of about 2 to 3 d to reach the flowering phase. Long roots; Increased biomass under continuous light; Late flowering in the dark-A. Fernie-2005 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis, adenine nucleotide metabolism and plant growth. {ECO:0000269|PubMed:15618410}.,FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ARA:AT2G37250-MONOMER;,ARA:AT2G39270-MONOMER; 2.7.4.3 31038,32391 Adenylate kinase 1, chloroplastic (AK 1) (AtPADK1) (EC 2.7.4.3) (ATP-AMP transphosphorylase 1) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 1) (AMK1),Probable adenylate kinase 6, chloroplastic (EC 2.7.4.3) (ATP-AMP transphosphorylase 6) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 6) (AMK6) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524]; cellular amino acid biosynthetic process [GO:0008652]; root development [GO:0048364]; shoot system development [GO:0048367],chloroplast [GO:0009507]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524] TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in roots, leaves and stems. {ECO:0000269|PubMed:15618410}. locus:2049842;,locus:2056098; AT2G37250,AT2G39270 adenylate kinase Probable adenylate kinase 1, chloroplastic (EC 2.7.4.3) (Adenylate monophosphate kinase 1),Os03g0130400 protein (Fragment) Q10S93,A0A0P0VSP2 KAD1_ORYSJ,A0A0P0VSP2_ORYSJ Os03g0130400 LOC_Os03g03820,Os03g0130400 OSNPB_030130400 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ENOG411DY4G LRR-RLK C0LGH2,C0LGH3,C0LGH4,A0A1P8ANE5,A0A1P8ARB1,A0A1P8ASI7,A0A1P8ASI5,F4I3K4,F4I3K0 Y1561_ARATH,Y5614_ARATH,C0LGH4_ARATH,A0A1P8ANE5_ARATH,A0A1P8ARB1_ARATH,A0A1P8ASI7_ARATH,A0A1P8ASI5_ARATH,F4I3K4_ARATH,F4I3K0_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (EC 2.7.11.1),Leucine-rich repeat receptor-like protein kinase (Leucine-rich repeat transmembrane protein kinase) (Fragment),Leucine-rich repeat transmembrane protein kinase 2.7.11.1 113042,113754,111791,100343,91373,96305,112845,114874,114766 Probable LRR receptor-like serine/threonine-protein kinase At1g56130 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (EC 2.7.11.1),Leucine-rich repeat receptor-like protein kinase (Leucine-rich repeat transmembrane protein kinase) (Fragment),Leucine-rich repeat transmembrane protein kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2205250;,locus:2011816;,locus:505006191;,locus:2205260; AT1G56130,AT1G56140,AT1G56145,AT1G56120 LRR receptor-like serine threonine-protein kinase OSJNBa0093O08.1 protein (Os04g0616300 protein),Os04g0616600 protein,Os08g0202300 protein,Os04g0616700 protein,Os04g0616700 protein (Fragment),Os08g0203100 protein (Fragment),Os04g0616400 protein (Fragment),Os04g0616500 protein,Os08g0202300 protein (Fragment),Os04g0616282 protein,Os04g0616200 protein (Fragment) Q7XTP6,Q0JA43,A0A0P0XD08,A0A0P0WES0,A0A0P0WER5,A0A0N7KJP8,A0A0P0XCT0,A0A0P0WF64,A0A0P0WET5,A0A0P0WF40,A0A0P0WET4,A0A0P0XCR7,A0A0P0WEZ8,A0A0N7KJP7 Q7XTP6_ORYSJ,Q0JA43_ORYSJ,A0A0P0XD08_ORYSJ,A0A0P0WES0_ORYSJ,A0A0P0WER5_ORYSJ,A0A0N7KJP8_ORYSJ,A0A0P0XCT0_ORYSJ,A0A0P0WF64_ORYSJ,A0A0P0WET5_ORYSJ,A0A0P0WF40_ORYSJ,A0A0P0WET4_ORYSJ,A0A0P0XCR7_ORYSJ,A0A0P0WEZ8_ORYSJ,A0A0N7KJP7_ORYSJ OSJNBa0093O08.1 Os04g0616300 OSNPB_040616300,Os04g0616600 Os04g0616600 OSNPB_040616600,Os08g0202300 OSNPB_080202300,Os04g0616700 OSNPB_040616700,Os08g0203100 OSNPB_080203100,Os04g0616400 OSNPB_040616400,Os04g0616500 OSNPB_040616500,Os04g0616282 OSNPB_040616282,Os04g0616200 OSNPB_040616200 ENOG411DY4F Q9LYG2 Q9LYG2_ARATH Classical AGP protein (Uncharacterized protein At5g11680) (Uncharacterized protein At5g11680; T22P22_70) (Uncharacterized protein T22P22_70) 23106 Classical AGP protein (Uncharacterized protein At5g11680) (Uncharacterized protein At5g11680; T22P22_70) (Uncharacterized protein T22P22_70) plasma membrane [GO:0005886] locus:2181880; AT5G11680 Inherit from KOG: WW domain binding protein 2 NA NA NA NA NA NA NA ENOG411DY4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sugar transmembrane transporter activity Bidirectional sugar transporter SWEET2b (OsSWEET2b) Q5N8J1 SWT2B_ORYSJ SWEET2B Os01g0700100 LOC_Os01g50460 OsJ_03146 P0047E11.3 P0454A11.22 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. ENOG411DY4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os01g0185400 protein (Fragment) A0A0P0UYZ4 A0A0P0UYZ4_ORYSJ Os01g0185400 OSNPB_010185400 ENOG411DY4B IOS1,SIRK O64556,Q9C8I6,O64483,O65924,Q9SZV2,A0A1P8B7D5 Y2923_ARATH,IOS1_ARATH,SIRK_ARATH,Y2921_ARATH,Q9SZV2_ARATH,A0A1P8B7D5_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 (EC 2.7.11.1),LRR receptor-like serine/threonine-protein kinase IOS1 (EC 2.7.11.-) (Protein IMPAIRED OOMYCETE SUSCEPTIBILITY 1),Senescence-induced receptor-like serine/threonine-protein kinase (FLG22-induced receptor-like kinase 1),Putative leucine-rich repeat receptor-like protein kinase At2g19210 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase protein (Serine/threonine-specific receptor protein kinase LRRPK),Leucine-rich repeat transmembrane protein kinase protein DISRUPTION PHENOTYPE: Reduced infection by filamentous (hemi)biotrophic oomycetes (e.g. H.arabidopsidis and P.parasitica) and fungal (e.g. E.cruciferarum) pathogens, independently of plant defense mechanism (PubMed:21711359, PubMed:25274985). Hypersensitivity to abscisic acid (ABA), displaying enhanced ABA-mediated inhibition of seed germination, root elongation, and stomatal opening. Impaired repression of ABA-sensitive COLD REGULATED and RESISTANCE TO DESICCATION genes upon oomycete infection. No obvious modification of defense-related gene induction during pathogen attack (PubMed:25274985). Hypersusceptibility to the necrotrophic bacteria P.syringae. Defective pattern-triggered immunity (PTI) responses, delayed up-regulation of PTI marker genes, reduced callose deposition, and mitogen-activated protein kinase activation upon microbe-associated molecular patterns (MAMPs) treatment. Impaired beta-aminobutyric acid (BABA)-induced resistance and priming (PubMed:27317676). {ECO:0000269|PubMed:21711359, ECO:0000269|PubMed:25274985, ECO:0000269|PubMed:27317676}. FUNCTION: Regulates negatively the abscisic acid (ABA) signaling pathway (PubMed:25274985). Required for full susceptibility to filamentous (hemi)biotrophic oomycetes (e.g. H.arabidopsidis and P.parasitica) and fungal (e.g. E.cruciferarum) pathogens, probably by triggering the repression of ABA-sensitive COLD REGULATED and RESISTANCE TO DESICCATION genes during infection, but independently of immune responses (PubMed:21711359, PubMed:25274985). Involved in BAK1-dependent and BAK1-independent microbe-associated molecular patterns (MAMPs)-triggered immunity (PTI) leading to defense responses, including callose deposition and MAPK cascade activation, toward pathogenic bacteria (e.g. P.syringae). Required for chitin-mediated PTI (PubMed:27317676). {ECO:0000269|PubMed:21711359, ECO:0000269|PubMed:25274985, ECO:0000269|PubMed:27317676}.,FUNCTION: Involved in innate immune response of plants. {ECO:0000269|PubMed:11875555}. 2.7.11.1,2.7.11.- 99011,99639,98712,98433,98745,82796 Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 (EC 2.7.11.1),LRR receptor-like serine/threonine-protein kinase IOS1 (EC 2.7.11.-) (Protein IMPAIRED OOMYCETE SUSCEPTIBILITY 1),Senescence-induced receptor-like serine/threonine-protein kinase (FLG22-induced receptor-like kinase 1),Putative leucine-rich repeat receptor-like protein kinase At2g19210 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase protein (Serine/threonine-specific receptor protein kinase LRRPK),Leucine-rich repeat transmembrane protein kinase protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; defense response to fungus [GO:0050832]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; negative regulation of defense response to oomycetes [GO:1902289]; positive regulation of defense response to bacterium [GO:1900426]; regulation of defense response by callose deposition [GO:2000071]; regulation of defense response to fungus [GO:1900150]; response to chitin [GO:0010200]; response to fungus [GO:0009620]; response to molecule of bacterial origin [GO:0002237]; response to molecule of fungal origin [GO:0002238]; response to oomycetes [GO:0002239],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] DEVELOPMENTAL STAGE: Predominantly expressed in tissue with fates controlled by the phytohormone abscisic acid (ABA). In roots, expressed in the radicle emerging from the testa, in the elongation zones of roots, and in root cap border cells undergoing detachment. In hypocotyls, detected only during etiolation in the dark. In cotyledons and leaves, restricted to cells surrounding stomata. In reproductive organs, observed in the style after pollination, in the abscission zones of sepals and petals, in the transmitting tract of developing fruits, and in the abscission zones of mature siliques. Also present in pollen tubes. {ECO:0000269|PubMed:25274985}. TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, flowers and siliques. {ECO:0000269|PubMed:25274985}. locus:2017557;,locus:2059093;,locus:2047675;,locus:2126540; AT2G19230,AT1G51800,AT2G19190,AT2G19210,AT4G29990 Leucine-rich repeat receptor-like protein kinase Os05g0524500 protein (Putative receptor like protein kinase) (Putative receptor protein kinase) (cDNA clone:J033046G16, full insert sequence),Os05g0525600 protein,Os09g0356200 protein,Os05g0525800 protein,Os05g0525000 protein,Os05g0524600 protein,Os05g0525501 protein,Os01g0124500 protein,Os05g0524732 protein Q65X96,A0A0P0WPP1,A0A0P0XLW6,A0A0N7KL44,A0A0P0WPZ4,A0A0P0WPJ7,A0A0P0WPZ2,A0A0P0UXP2,A0A0P0WQ48 Q65X96_ORYSJ,A0A0P0WPP1_ORYSJ,A0A0P0XLW6_ORYSJ,A0A0N7KL44_ORYSJ,A0A0P0WPZ4_ORYSJ,A0A0P0WPJ7_ORYSJ,A0A0P0WPZ2_ORYSJ,A0A0P0UXP2_ORYSJ,A0A0P0WQ48_ORYSJ Os05g0524500 Os05g0524500 OJ1593_C11.2 OSJNBa0075A10.19 OSNPB_050524500,Os05g0525600 OSNPB_050525600,Os09g0356200 OSNPB_090356200,Os05g0525800 OSNPB_050525800,Os05g0525000 OSNPB_050525000,Os05g0524600 OSNPB_050524600,Os05g0525501 OSNPB_050525501,Os01g0124500 OSNPB_010124500,Os05g0524732 OSNPB_050524732 ENOG411DY4M RPS4; Q31708 RT04_ARATH Ribosomal protein S4, mitochondrial MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07734) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. 43390 Ribosomal protein S4, mitochondrial mitochondrion [GO:0005739]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; positive regulation of translational fidelity [GO:0045903] AT2G07734ATMG00290; ribosomal protein S4 Ribosomal protein S4 Q8HCN9 Q8HCN9_ORYSJ rps4 ENOG411DY4N IIL1 Q94AR8 LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic (EC 4.2.1.33) (AtLEUC) (Isopropylmalate isomerase large subunit 1) (AtIIL1) Abnormal aliphatic glucosinolate composition; Elevated levels of intermediates of leucine biosynthesis and methionine chain elongation-M. Hirai-2009 FUNCTION: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. {ECO:0000269|PubMed:19150812, ECO:0000269|PubMed:20663849}. MISCELLANEOUS: The environment dependent reduction in IIL1 activity and severely impaired growth of cv. Bur-0 are caused by a triplet repeat expansion in the third intron of the gene (PubMed:19150812). {ECO:0000305|PubMed:19150812}. PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4. ARA:AT4G13430-MONOMER;MetaCyc:AT4G13430-MONOMER; 4.2.1.33; 4.2.1.33 55014 3-isopropylmalate dehydratase large subunit, chloroplastic (EC 4.2.1.33) (AtLEUC) (Isopropylmalate isomerase large subunit 1) (AtIIL1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3-isopropylmalate dehydratase activity [GO:0003861]; 4 iron, 4 sulfur cluster binding [GO:0051539]; intramolecular transferase activity, transferring hydroxy groups [GO:0050486]; metal ion binding [GO:0046872]; glucosinolate biosynthetic process [GO:0019761]; leucine biosynthetic process [GO:0009098]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. Expressed at low levels in siliques. {ECO:0000269|PubMed:20663849}. locus:2142120; AT4G13430 3-isopropylmalate Os02g0125100 protein (Putative 3-isopropylmalate dehydratase large subunit) (cDNA clone:J033070M16, full insert sequence) Q6Z702 Q6Z702_ORYSJ Os02g0125100 Os02g0125100 OsJ_05201 OSNPB_020125100 P0575F10.36 ENOG411DY4I AHL26,AHL22,AHL24,AHL18 Q9SZ70,O22130,O49662,Q9LZX7 AHL26_ARATH,AHL22_ARATH,AHL24_ARATH,AHL18_ARATH AT-hook motif nuclear-localized protein 26,AT-hook motif nuclear-localized protein 22,AT-hook motif nuclear-localized protein 24,AT-hook motif nuclear-localized protein 18 DISRUPTION PHENOTYPE: Slightly longer hypocotyls. {ECO:0000269|PubMed:19517252}. Slightly longer hypocotyl-Y. Fu-2009 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}.,FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). Binds an AT-rich DNA sequences in the FLOWERING LOCUS T (FT) promoter (PubMed:22442143). Acts redundantly with AHL18, AHL27 and AHL29 in the regulation of flowering and regulation of the hypocotyl elongation. Plays a role in both photo- and skotomorphogenesis (PubMed:19517252). Acts as a chromatin remodeling factor that modifies the architecture of FLOWERING LOCUS T (FT) chromatin by modulating both H3 acetylation and methylation leading to the regulation of FT expression during flowering induction (PubMed:22442143). {ECO:0000269|PubMed:19517252, ECO:0000269|PubMed:22442143}.,FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Acts redundantly with AHL22, AHL27 and AHL29 in the regulation of flowering and regulation of the hypocotyl elongation (PubMed:19517252). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:19517252}. MISCELLANEOUS: Overexpression of AHL22 results in delayed flowering and inhibition of hypocotyl growth. {ECO:0000269|PubMed:19517252}. 35785,33519,34339,28412 AT-hook motif nuclear-localized protein 26,AT-hook motif nuclear-localized protein 22,AT-hook motif nuclear-localized protein 24,AT-hook motif nuclear-localized protein 18 nucleus [GO:0005634]; AT DNA binding [GO:0003680]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; AT DNA binding [GO:0003680]; histone deacetylase binding [GO:0042826]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; photomorphogenesis [GO:0009640]; skotomorphogenesis [GO:0009647]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; AT DNA binding [GO:0003680]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Highly expressed in earlier growth stages in hypocotyls, roots and the vascular bundles of the leaves. Detected later in the vascular bundles of the basal leaves aera. {ECO:0000269|PubMed:22442143}. TISSUE SPECIFICITY: Expressed at the hypocotyl-root transition zone and the root hair zone. Also detected in the inflorescence. {ECO:0000269|PubMed:19517252}. locus:2118051;,locus:2050946;,locus:2132639;,locus:2101916; AT4G12050,AT2G45430,AT4G22810,AT3G60870 DNA-binding protein ESCAROLA-like Os02g0448000 protein (Putative DNA-binding protein AT-hook 2) Q6EQU6 Q6EQU6_ORYSJ Os02g0448000 OsJ_06576 OSJNBb0075E08.37 OSNPB_020448000 ENOG411DY4H SCAB2,SCAB3 F4IIZ9,Q8GX05,A0A1P8AYP0,A0A1P8AYQ0,A0A1P8AYT2 SCAB2_ARATH,SCAB3_ARATH,A0A1P8AYP0_ARATH,A0A1P8AYQ0_ARATH,A0A1P8AYT2_ARATH Stomatal closure-related actin-binding protein 2,Stomatal closure-related actin-binding protein 3,Stomatal closure actin-binding-like protein FUNCTION: Probable plant-specific actin binding protein that bundles and stabilizes microfilaments (MFs). {ECO:0000303|PubMed:21719691}. 54434,54919,42443,57464,56004 Stomatal closure-related actin-binding protein 2,Stomatal closure-related actin-binding protein 3,Stomatal closure actin-binding-like protein cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; actin binding [GO:0003779],cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; actin binding [GO:0003779]; circadian rhythm [GO:0007623],actin binding [GO:0003779] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, siliques and flowers. {ECO:0000303|PubMed:21719691}. locus:2058455;,locus:2102534; AT2G40820,AT3G56480 NA NA NA NA NA NA NA NA ENOG411DY4K TRM13 O80829 O80829_ARATH Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein (Uncharacterized protein At2g45900) 81665 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein (Uncharacterized protein At2g45900) plasmodesma [GO:0009506]; transferase activity [GO:0016740]; response to gibberellin [GO:0009739] locus:2050684; AT2G45900 Inherit from euNOG: Expressed protein Os04g0559200 protein (cDNA clone:J013051G09, full insert sequence),Os04g0559200 protein (Fragment) Q0JB34,A0A0P0WDB1,A0A0N7KJH8 Q0JB34_ORYSJ,A0A0P0WDB1_ORYSJ,A0A0N7KJH8_ORYSJ Os04g0559200 Os04g0559200 OSNPB_040559200,Os04g0559200 OSNPB_040559200 ENOG411DY4J MOJ9.5,dl4140w Q8RXF1,Q9FL57,O23467,F4HW92,Q94CL4,F4IWK8 SF3A1_ARATH,Q9FL57_ARATH,O23467_ARATH,F4HW92_ARATH,Q94CL4_ARATH,F4IWK8_ARATH Probable splicing factor 3A subunit 1,Gb|AAF63169.1 (Ubiquitin-like superfamily protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (Splicing factor SF3a like protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein,SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (Uncharacterized protein At5g12280),SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein R-ATH-72163; 87594,7192,33211,82815,47282,36145 Probable splicing factor 3A subunit 1,Gb|AAF63169.1 (Ubiquitin-like superfamily protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (Splicing factor SF3a like protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein,SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (Uncharacterized protein At5g12280),SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein catalytic step 2 spliceosome [GO:0071013]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; U2-type spliceosomal complex [GO:0005684]; RNA binding [GO:0003723]; mRNA 3'-splice site recognition [GO:0000389]; mRNA splicing, via spliceosome [GO:0000398]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381],catalytic step 2 spliceosome [GO:0071013]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; RNA binding [GO:0003723]; mRNA 3'-splice site recognition [GO:0000389]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381] locus:2204528;,locus:2169419;,locus:2130195;,locus:2204523;,locus:505006596;,locus:2091463; AT1G14650,AT5G06890,AT4G16200,AT1G14640,AT5G12280,AT3G27600 splicing factor 3A subunit Os02g0245000 protein (Putative splicing factor 3a),Os02g0245000 protein (Fragment) Q6EUD5,A0A0P0VGY4 Q6EUD5_ORYSJ,A0A0P0VGY4_ORYSJ Os02g0245000 OJ1134_F06.6 OsJ_06052 OSNPB_020245000,Os02g0245000 OSNPB_020245000 ENOG411DY4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DY4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os06g0158300 protein (Putative MLA6 protein) (Putative NBS-LRR type disease resistance protein),Os03g0422900 protein,Os06g0158400 protein Q651T2,A0A0P0VZG5,A0A0P0WTA8 Q651T2_ORYSJ,A0A0P0VZG5_ORYSJ,A0A0P0WTA8_ORYSJ KMK0024M20.32 Os06g0158300 OSNPB_060158300 P0046E09.37 P0702F05.17,Os03g0422900 OSNPB_030422900,Os06g0158400 OSNPB_060158400 ENOG411DY4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Os09g0497500 protein (cDNA clone:J023138P12, full insert sequence) Q0J0J4 Q0J0J4_ORYSJ Os09g0497500 Os09g0497500 OSNPB_090497500 ENOG411DY4V Q84VX7 Q84VX7_ARATH At1g51540 (Galactose oxidase/kelch repeat superfamily protein) 46747 At1g51540 (Galactose oxidase/kelch repeat superfamily protein) cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; SCF ubiquitin ligase complex [GO:0019005]; trans-Golgi network [GO:0005802]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2033944; AT1G51540 kelch repeat-containing protein OJ991113_30.6 protein (Os04g0487100 protein) (cDNA clone:001-206-B07, full insert sequence),Os11g0549683 protein Q7XSB4,A0A0P0Y354 Q7XSB4_ORYSJ,A0A0P0Y354_ORYSJ Os04g0487100 Os04g0487100 OJ991113_30.6 OSNPB_040487100,Os11g0549683 OSNPB_110549683 ENOG411DY4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:HDAC_interact Os05g0588700 protein Q0DFI3 Q0DFI3_ORYSJ Os05g0588700 Os05g0588700 OSNPB_050588700 ENOG411DY4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF593 Os03g0708700 protein (Fragment) A0A0P0W2P6 A0A0P0W2P6_ORYSJ Os03g0708700 OSNPB_030708700 ENOG411DY4S Q9C502 CAP11_ARATH Putative clathrin assembly protein At1g33340 42110 Putative clathrin assembly protein At1g33340 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897] locus:2006912; AT1G33340 Clathrin assembly protein Os11g0244600 protein (Fragment) Q0ITF5 Q0ITF5_ORYSJ Os11g0244600 Os11g0244600 OSNPB_110244600 ENOG411DY4R GDPDL3,GDPDL1,GDPDL4,LRK10L-2.6,SNC4,SVL2 Q9SZ11,Q7Y208,Q9FJ62,D7SFH9,A0A1P8AWC0,A0A1P8AWH4,A0A1P8AQY3,A0A1P8AWB8,F4HQ30 GPDL3_ARATH,GPDL1_ARATH,GPDL4_ARATH,LRL26_ARATH,A0A1P8AWC0_ARATH,A0A1P8AWH4_ARATH,A0A1P8AQY3_ARATH,A0A1P8AWB8_ARATH,F4HQ30_ARATH Glycerophosphodiester phosphodiesterase GDPDL3 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 3) (ATGDPDL3) (Glycerophosphodiesterase-like 2) (Protein MUTANT ROOT HAIR 5) (Protein SHAVEN 3),Glycerophosphodiester phosphodiesterase GDPDL1 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 1) (ATGDPDL1) (Glycerophosphodiesterase-like 3) (Protein SHV3-LIKE 2),Glycerophosphodiester phosphodiesterase GDPDL4 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 4) (ATGDPDL4) (Glycerophosphodiesterase-like 1) (Protein SHV3-LIKE 1),Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 [Includes: Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 2) (ATGDPDL2); LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.6 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.6)],Suppressor of npr1-1 constitutive 4,SHV3-like 2 DISRUPTION PHENOTYPE: Defective in root hair formation (PubMed:16367956, PubMed:18718934). This phenotype is partially suprressed by application of exogenous borate (PubMed:18718934). {ECO:0000269|PubMed:16367956, ECO:0000269|PubMed:18718934}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditons. {ECO:0000269|PubMed:18718934, ECO:0000269|PubMed:20508139}. Homozygotes: Tip growth in almost all root hair cells was blocked due to rupture of the tip.,Short wide burst hairs,Increased anthocyanin accumulation. Collapsed trichomes.Brown discoloration around endodermis in the hypocotyl and root due to ectopic lignification. Guard cells are larger than WT due to swollen ventral sides. Swollen hypocotyl epidermis with uneven surface. Four-day old dark-grown seedlings have shorter thicker hypocotyls than WT. Cell wall analysis: reduced crystalline cellulose. Increased starch content. Neutral sugar content is same as WT. Increases protein. Increased uronic acid and decreased amount of methyl esterification.,same as smb-3 single mutant Root hair growth blocked due to tip rupture-T. Hirayama-2008 FUNCTION: Involved in primary cell wall organization. Required for the accumulation of crystalline cellulose. {ECO:0000269|PubMed:18718934}.,FUNCTION: Hydrolyzes glycerolphosphoglycerol, glycerophosphocholine and glycerophosphoethanolamine in vitro. {ECO:0000269|PubMed:21323773}.,FUNCTION: Atypical receptor-like kinase involved in disease resistance. {ECO:0000269|PubMed:20508139}. MISCELLANEOUS: Gain-of-function mutant plants snc4-1D show a dwarf phenotype, express constitutively the defense marker genes PR1, PR2, and PDF1.2, and display enhanced resistance to Hyaloperonospora arabidopsidis isolate NOCO2. {ECO:0000269|PubMed:20508139}. ARA:AT1G66980-MONOMER; 3.1.4.46,3.1.4.46; 2.7.11.1 82562,83788,84165,123825,122169,126912,62234,127257,86377 Glycerophosphodiester phosphodiesterase GDPDL3 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 3) (ATGDPDL3) (Glycerophosphodiesterase-like 2) (Protein MUTANT ROOT HAIR 5) (Protein SHAVEN 3),Glycerophosphodiester phosphodiesterase GDPDL1 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 1) (ATGDPDL1) (Glycerophosphodiesterase-like 3) (Protein SHV3-LIKE 2),Glycerophosphodiester phosphodiesterase GDPDL4 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 4) (ATGDPDL4) (Glycerophosphodiesterase-like 1) (Protein SHV3-LIKE 1),Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 [Includes: Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 2) (ATGDPDL2); LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.6 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.6)],Suppressor of npr1-1 constitutive 4,SHV3-like 2 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; cell tip growth [GO:0009932]; glycerol metabolic process [GO:0006071]; guard cell morphogenesis [GO:0010442]; lipid metabolic process [GO:0006629]; plant-type cell wall cellulose metabolic process [GO:0052541]; root epidermal cell differentiation [GO:0010053]; root hair cell differentiation [GO:0048765]; trichome differentiation [GO:0010026],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; guard cell morphogenesis [GO:0010442]; lipid metabolic process [GO:0006629]; plant-type cell wall cellulose metabolic process [GO:0052541]; trichome differentiation [GO:0010026],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; protein serine/threonine kinase activity [GO:0004674]; cellular defense response [GO:0006968]; defense response [GO:0006952]; glycerol metabolic process [GO:0006071]; innate immune response [GO:0045087]; lipid metabolic process [GO:0006629],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; phosphoric diester hydrolase activity [GO:0008081]; protein kinase activity [GO:0004672]; lipid metabolic process [GO:0006629],phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; chloroplast [GO:0009507]; plasma membrane [GO:0005886]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; cellular phosphate ion homeostasis [GO:0030643]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in roots, shoots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18718934, ECO:0000269|PubMed:21323773}.,TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21323773}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18718934, ECO:0000269|PubMed:21323773}.,TISSUE SPECIFICITY: Expressed in shoots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21323773}. locus:2116377;,locus:2173977;,locus:2019708;,locus:2019738; AT4G26690,AT1G66970,AT5G55480,AT1G66980 Glycerophosphoryl diester phosphodiesterase family Os08g0503200 protein (Putative glycerophosphoryl diester phosphodiesterase 2) (cDNA clone:J013002G11, full insert sequence) (cDNA clone:J013030N03, full insert sequence),Os12g0456700 protein (Fragment),Os09g0339800 protein Q6ZFH9,Q0ING5,A0A0P0XM87 Q6ZFH9_ORYSJ,Q0ING5_ORYSJ,A0A0P0XM87_ORYSJ Os08g0503200 OJ1506_F01.22 OsJ_27854 OSNPB_080503200,Os12g0456700 Os12g0456700 OSNPB_120456700,Os09g0339800 OSNPB_090339800 ENOG411DY4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN Os10g0146200 protein (Fragment),Os03g0243900 protein (Thaumatin family protein, expressed) (cDNA clone:J023088H12, full insert sequence) Q0IYZ3,Q10P77 Q0IYZ3_ORYSJ,Q10P77_ORYSJ Os10g0146200 OSNPB_100146200,Os03g0243900 LOC_Os03g14030 Os03g0243900 OSNPB_030243900 ENOG411DY4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0468300 protein (Os06g0468400 protein) Q5Z4Y2 Q5Z4Y2_ORYSJ Os06g0468400 Os06g0468300 B1061F01.3 OsJ_21309 OSNPB_060468400 ENOG411DY4Z XTH8 Q8L9A9 XTH8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 8 (At-XTH8) (XTH-8) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. ARA:AT1G11545-MONOMER; 2.4.1.207 35565 Probable xyloglucan endotransglucosylase/hydrolase protein 8 (At-XTH8) (XTH-8) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] locus:2823919; AT1G11545 Xyloglucan endotransglucosylase hydrolase protein Os07g0529700 protein (Xyloglucan endotransglycosylase-like protein) (cDNA clone:002-181-F07, full insert sequence),Os07g0529700 protein Q7XHY4,A0A0P0X715 Q7XHY4_ORYSJ,A0A0P0X715_ORYSJ P0681F05.108-2 Os07g0529700 OSNPB_070529700,Os07g0529700 OSNPB_070529700 ENOG411DY45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os11g0182900 protein,Os11g0182500 protein (Fragment),Os11g0183150 protein (Fragment),Os11g0183350 protein A0A0P0XZD1,A0A0P0XZL8,A0A0P0XZP6,A0A0N7KSJ1,A0A0P0XZN0 A0A0P0XZD1_ORYSJ,A0A0P0XZL8_ORYSJ,A0A0P0XZP6_ORYSJ,A0A0N7KSJ1_ORYSJ,A0A0P0XZN0_ORYSJ Os11g0182900 OSNPB_110182900,Os11g0182500 OSNPB_110182500,Os11g0183150 OSNPB_110183150,Os11g0183350 OSNPB_110183350 ENOG411DY44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0664200 protein (S-receptor kinase homolog-like) (cDNA clone:J013160C18, full insert sequence) Q94E23 Q94E23_ORYSJ Os01g0664200 Os01g0664200 OsJ_02917 OSNPB_010664200 P0003E08.8 ENOG411DY47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain Os08g0290700 protein (Putative catechol O-methyltransferase),Os08g0169300 protein,Os08g0454500 protein Q6Z9P5,A0A0P0XC80,A0A0P0XHA8 Q6Z9P5_ORYSJ,A0A0P0XC80_ORYSJ,A0A0P0XHA8_ORYSJ Os08g0290700 Os08g0290700 OSNPB_080290700 P0467G09.22,Os08g0169300 OSNPB_080169300,Os08g0454500 OSNPB_080454500 ENOG411DY46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bidirectional sugar transporter Bidirectional sugar transporter SWEET16 (OsSWEET16),Bidirectional sugar transporter SWEET Q10LN5,A0A0P0VX87 SWT16_ORYSJ,A0A0P0VX87_ORYSJ SWEET16 Os03g0341300 LOC_Os03g22200 OsJ_10795,Os03g0341300 OSNPB_030341300 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the membrane. {ECO:0000256|RuleBase:RU910715}. ENOG411DY41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os06g0597250 protein (Transposase),Os03g0564800 protein (Fragment) A5HBA7,A0A0P0W040 A5HBA7_ORYSJ,A0A0P0W040_ORYSJ Os06g0597250 OSNPB_060597250,Os03g0564800 OSNPB_030564800 ENOG411DY40 Q93WB8,F4I1T8 Q93WB8_ARATH,F4I1T8_ARATH 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (Uncharacterized protein At3g13410),2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 34989,14708 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (Uncharacterized protein At3g13410),2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nucleotidyltransferase activity [GO:0016779],nucleotidyltransferase activity [GO:0016779] locus:2092875;,locus:4515102682; AT3G13410,AT1G55546 expressed protein Expressed protein (Os12g0123900 protein) (cDNA clone:001-040-G12, full insert sequence),Expressed protein (Os11g0127700 protein) Q2QYD3,Q2RB32 Q2QYD3_ORYSJ,Q2RB32_ORYSJ LOC_Os12g03060 Os12g0123900 OsJ_35060 OSNPB_120123900,LOC_Os11g03380 Os11g0127700 OsJ_32788 OSNPB_110127700 ENOG411DY43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-V NA NA NA NA NA NA NA ENOG411DY42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A9 (Alpha-expansin-9) (OsEXP9) (OsEXPA9) (OsaEXPa1.19),Os01g0249100 protein (Fragment) Q4PR53,A0A0N7KCN8 EXPA9_ORYSJ,A0A0N7KCN8_ORYSJ EXPA9 EXP9 Os01g0249100 LOC_Os01g14660 OSJNBa0049B20.24 P0034C11.32,Os01g0249100 OSNPB_010249100 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DY49 CSLC5,CSLC12,CSLC8 Q9SB75,Q9ZQB9,Q9SJA2 CSLC5_ARATH,CSLCC_ARATH,CSLC8_ARATH Probable xyloglucan glycosyltransferase 5 (EC 2.4.1.-) (Cellulose synthase-like protein C5) (AtCslC5),Probable xyloglucan glycosyltransferase 12 (EC 2.4.1.-) (Cellulose synthase-like protein C12) (AtCslC12),Probable xyloglucan glycosyltransferase 8 (EC 2.4.1.-) (Cellulose synthase-like protein C8) (AtCslC8) FUNCTION: Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose. Seems to work simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a noncellulosic polysaccharides of plant cell wall and consists of a glucan backbone substituted by xylose, galactose and fucose (By similarity). {ECO:0000250}. ARA:AT4G07960-MONOMER;,ARA:AT2G24630-MONOMER; 2.4.1.- 79421,80123,79489 Probable xyloglucan glycosyltransferase 5 (EC 2.4.1.-) (Cellulose synthase-like protein C5) (AtCslC5),Probable xyloglucan glycosyltransferase 12 (EC 2.4.1.-) (Cellulose synthase-like protein C12) (AtCslC12),Probable xyloglucan glycosyltransferase 8 (EC 2.4.1.-) (Cellulose synthase-like protein C8) (AtCslC8) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2124804;,locus:2120532;,locus:2046688; AT4G31590,AT4G07960,AT2G24630 beta-14-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose. Seems to work simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a noncellulosic polysaccharides of plant cell wall and consists of a glucan backbone substituted by xylose galactose and fucose (By similarity) Probable xyloglucan glycosyltransferase 3 (EC 2.4.1.-) (Cellulose synthase-like protein C3) (OsCslC3),Probable xyloglucan glycosyltransferase 2 (EC 2.4.1.-) (Cellulose synthase-like protein C2) (OsCslC2),Probable xyloglucan glycosyltransferase 9 (EC 2.4.1.-) (Cellulose synthase-like protein C9) (OsCslC9),Putative xyloglucan glycosyltransferase 10 (EC 2.4.1.-) (Cellulose synthase-like protein C10) (OsCslC10),Os07g0124750 protein,Os09g0428000 protein (Fragment),Os08g0253800 protein Q7PC69,Q69L19,Q6AU53,Q84Z01,A0A0P0X1U1,A0A0P0XM05,A0A0P0XDR2 CSLC3_ORYSJ,CSLC2_ORYSJ,CSLC9_ORYSJ,CSLCA_ORYSJ,A0A0P0X1U1_ORYSJ,A0A0P0XM05_ORYSJ,A0A0P0XDR2_ORYSJ CSLC3 Os08g0253800 LOC_Os08g15420 OJ1112_D12.1 OJ1575_B01.13,CSLC2 Os09g0428000 LOC_Os09g25900 OJ1299_A11.39 OsJ_028287 P0689B09.2,CSLC9 Os03g0770800 LOC_Os03g56060 OSJNBa0072F13.8,CSLC10 Os07g0124750 LOC_Os07g03260 P0474G09.119,Os07g0124750 OSNPB_070124750,Os09g0428000 OSNPB_090428000,Os08g0253800 OSNPB_080253800 FUNCTION: Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose. Seems to work simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a noncellulosic polysaccharides of plant cell wall and consists of a glucan backbone substituted by xylose, galactose and fucose (By similarity). {ECO:0000250}. ENOG411DY48 Q8L6Z2,O64731,F4HNW4 Q8L6Z2_ARATH,O64731_ARATH,F4HNW4_ARATH At1g07030 (Mitochondrial carrier protein, putative) (Mitochondrial substrate carrier family protein),Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein),Mitochondrial substrate carrier family protein 35703,35961,18889 At1g07030 (Mitochondrial carrier protein, putative) (Mitochondrial substrate carrier family protein),Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein),Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; iron ion transmembrane transporter activity [GO:0005381]; iron ion homeostasis [GO:0055072]; mitochondrial iron ion transport [GO:0048250]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2007387;,locus:2060811;,locus:505006105; AT1G07030,AT2G30160,AT1G07025 mitochondrial substrate carrier family protein Mitochondrial carrier protein, expressed (Os03g0296800 protein) (cDNA clone:J013112D16, full insert sequence),Mitochondrial carrier protein, expressed (Os03g0296800 protein) (cDNA clone:001-016-B10, full insert sequence) Q10MS7,Q10MS8 Q10MS7_ORYSJ,Q10MS8_ORYSJ Os03g0296800 LOC_Os03g18550 OSNPB_030296800,Os03g0296800 LOC_Os03g18550 Os03g0296800 OSNPB_030296800 ENOG411E1Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein FAR1-RELATED SEQUENCE 11-like NA NA NA NA NA NA NA ENOG411E1Q2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os01g0383100 protein (cDNA, clone: J065076J07, full insert sequence),Leucine zipper protein-like (Os02g0575900 protein) (cDNA clone:J033086P19, full insert sequence) B7F8K2,Q69JW6 B7F8K2_ORYSJ,Q69JW6_ORYSJ Os01g0383100 OSNPB_010383100,Os02g0575900 B1342F01.4 OsJ_07242 OSNPB_020575900 P0703B01.25 ENOG411DTRF VAC14 Q9ZU97,F4IPA6 VAC14_ARATH,F4IPA6_ARATH Protein VAC14 homolog,ARM repeat superfamily protein FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Regulates the synthesis of PtdIns(3,5)P2 by positive activation of FAB1 and by controlling SAC/FIG4 localization (By similarity). {ECO:0000250}. R-ATH-1660514;R-ATH-1660516;R-ATH-1660517; 83912,84040 Protein VAC14 homolog,ARM repeat superfamily protein PAS complex [GO:0070772]; regulation of lipid kinase activity [GO:0043550],PAS complex [GO:0070772]; vacuolar membrane [GO:0005774]; regulation of lipid kinase activity [GO:0043550] locus:2065423; AT2G01690 protein VAC14 homolog HEAT repeat family protein, expressed (Os03g0223700 protein) (cDNA clone:J013154C20, full insert sequence) Q10PS3 Q10PS3_ORYSJ LOC_Os03g12300 Os03g0223700 OsJ_09975 OSNPB_030223700 ENOG411DTRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCAMP family NA NA NA NA NA NA NA ENOG411DTRD Q9ZVT5,Q8RXG5,F4JHX3 Q9ZVT5_ARATH,Q8RXG5_ARATH,F4JHX3_ARATH F15K9.6,Uncharacterized protein At4g02920,Uncharacterized protein 44027,47323,47194 F15K9.6,Uncharacterized protein At4g02920,Uncharacterized protein locus:2014470;,locus:2139315; AT1G03340,AT4G02920 NA Os05g0143300 protein (cDNA clone:J023143G06, full insert sequence) Q75KK9 Q75KK9_ORYSJ Os05g0143300 Os05g0143300 OJ1264_A04.19 OJ1607_F09.2 OSNPB_050143300 ENOG411DTRE RABC2A O49841 RAC2A_ARATH Ras-related protein RABC2a (AtRABC2a) (Ras-related protein Rab18B) (AtRab18B) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-6798695;R-ATH-6811436;R-ATH-8876198; 23306 Ras-related protein RABC2a (AtRABC2a) (Ras-related protein Rab18B) (AtRab18B) Golgi apparatus [GO:0005794]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTP-dependent protein binding [GO:0030742]; GTPase activity [GO:0003924]; myosin XI tail binding [GO:0080115]; protein transport [GO:0015031] locus:2831859; AT5G03530 ras-related protein Os10g0456600 protein (Ras-related protein Rab-18, putative, expressed) (cDNA clone:J033109P10, full insert sequence),Os03g0146000 protein (Putative GTP-binding protein) (Ras family protein, expressed) (cDNA clone:006-211-F09, full insert sequence) Q7XDQ3,Q10RT8 Q7XDQ3_ORYSJ,Q10RT8_ORYSJ LOC_Os10g31830 Os10g0456600 OsJ_31770 OSNPB_100456600,LOC_Os03g05280 Os03g0146000 OsJ_09398 OSJNBa0067N01.17 OSNPB_030146000 ENOG411DTRB Q9LSV5 Q9LSV5_ARATH Bacterial hemolysin-like protein (Hemolysin, putative) (Hemolysin-like) 33205 Bacterial hemolysin-like protein (Hemolysin, putative) (Hemolysin-like) methyltransferase activity [GO:0008168]; RNA binding [GO:0003723] locus:2094478; AT3G25470 FtsJ-like methyltransferase Hemolysin A family protein, expressed (Hemolysin A, putative) (Os11g0247400 protein) Q53M53 Q53M53_ORYSJ Os11g0247400 LOC_Os11g14230 Os11g0247400 OSNPB_110247400 ENOG411DTRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0539700 protein (PibH8 protein) (Putative Pi-b protein),Disease related protein 1 (Os08g0539400 protein) (Putative Pi-b protein),Os08g0539700 protein (Fragment),Os08g0539700 protein,Os02g0476400 protein,Os12g0559600 protein,Os02g0478100 protein,Os12g0559300 protein,Os08g0539900 protein,Os02g0475500 protein,Os12g0559400 protein,Os02g0478300 protein Q9MBF2,Q84QL4,A0A0P0XJM8,A0A0P0XJT2,A0A0P0VIZ5,A0A0P0YC87,A0A0P0VJ02,A0A0P0YBA0,A0A0P0XIY2,A0A0P0VJ01,A0A0P0YBC7,A0A0P0VIY6 Q9MBF2_ORYSJ,Q84QL4_ORYSJ,A0A0P0XJM8_ORYSJ,A0A0P0XJT2_ORYSJ,A0A0P0VIZ5_ORYSJ,A0A0P0YC87_ORYSJ,A0A0P0VJ02_ORYSJ,A0A0P0YBA0_ORYSJ,A0A0P0XIY2_ORYSJ,A0A0P0VJ01_ORYSJ,A0A0P0YBC7_ORYSJ,A0A0P0VIY6_ORYSJ PibH8 P0666G10.122 Os08g0539700 OSNPB_080539700,P0666G10.118 Os08g0539400 OsJ_28113 OSNPB_080539400,Os08g0539700 OSNPB_080539700,Os02g0476400 OSNPB_020476400,Os12g0559600 OSNPB_120559600,Os02g0478100 OSNPB_020478100,Os12g0559300 OSNPB_120559300,Os08g0539900 OSNPB_080539900,Os02g0475500 OSNPB_020475500,Os12g0559400 OSNPB_120559400,Os02g0478300 OSNPB_020478300 ENOG411DTRA Q9C5A5 Q9C5A5_ARATH At5g08720 (Polyketide cyclase/dehydrase/lipid transporter) (Uncharacterized protein At5g08720) (Uncharacterized protein At5g08720/T2K12_70) 81922 At5g08720 (Polyketide cyclase/dehydrase/lipid transporter) (Uncharacterized protein At5g08720) (Uncharacterized protein At5g08720/T2K12_70) chloroplast [GO:0009507]; chloroplast nucleoid [GO:0042644]; cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA 5'-UTR binding [GO:0048027]; chloroplast mRNA processing [GO:0010239]; meristem development [GO:0048507]; polycistronic mRNA processing [GO:0031426]; post-embryonic development [GO:0009791]; regulation of gene expression [GO:0010468] locus:504956340; AT5G08720 Polyketide cyclase / dehydrase and lipid transport Os03g0837900 protein (Streptomyces cyclase/dehydrase family protein, expressed) Q10AX3 Q10AX3_ORYSJ LOC_Os03g62170 Os03g0837900 OSNPB_030837900 ENOG411DTRN PIS1,PIS2 Q8LBA6,Q8GUK6,F4JTR2 PIS1_ARATH,PIS2_ARATH,F4JTR2_ARATH CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (AtPIS1) (PI synthase 1) (PtdIns synthase 1),Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (EC 2.7.8.11) (Phosphatidylinositol synthase 2) (AtPIS2) (PI synthase 2) (PtdIns synthase 2),CDP-diacylglycerol--inositol 3-phosphatidyltransferase (EC 2.7.8.11) FUNCTION: Catalyzes the biosynthesis of phosphatidylinositol (PtdIns) as well as PtdIns:inositol exchange reaction. May thus act to reduce an excessive cellular PtdIns content. The exchange activity is due to the reverse reaction of PtdIns synthase and is dependent on CMP, which is tightly bound to the enzyme. {ECO:0000269|PubMed:10411624, ECO:0000269|PubMed:10809447, ECO:0000269|PubMed:11985617, ECO:0000269|PubMed:14563413}.,FUNCTION: Catalyzes the biosynthesis of phosphatidylinositol (PtdIns) as well as PtdIns:inositol exchange reaction. May thus act to reduce an excessive cellular PtdIns content. The exchange activity is due to the reverse reaction of PtdIns synthase and is dependent on CMP, which is tightly bound to the enzyme (By similarity). {ECO:0000250}. ARA:AT4G38570-MONOMER; R-ATH-1483226; 2.7.8.11; Phosphatidylinositol signaling system (04070),Glycerophospholipid metabolism (00564),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 2.7.8.11 25861,25580,24695 CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (AtPIS1) (PI synthase 1) (PtdIns synthase 1),Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (EC 2.7.8.11) (Phosphatidylinositol synthase 2) (AtPIS2) (PI synthase 2) (PtdIns synthase 2),CDP-diacylglycerol--inositol 3-phosphatidyltransferase (EC 2.7.8.11) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity [GO:0003881]; metal ion binding [GO:0046872]; phospholipid biosynthetic process [GO:0008654],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity [GO:0003881]; metal ion binding [GO:0046872]; phospholipid biosynthetic process [GO:0008654],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity [GO:0003881]; phospholipid biosynthetic process [GO:0008654] TISSUE SPECIFICITY: Expressed in stems, flowers, shoots and roots. Present in epidermal tissues. {ECO:0000269|PubMed:10809447}. locus:2200241;,locus:2121184; AT1G68000,AT4G38570 cdp-diacylglycerol--inositol 3-phosphatidyltransferase CDP-diacylglycerol--inositol 3-phosphatidyltransferase (EC 2.7.8.11),Os06g0492000 protein (Fragment) Q6Z717,A0A0P0WWU4 Q6Z717_ORYSJ,A0A0P0WWU4_ORYSJ Os02g0123600 OSNPB_020123600 P0575F10.15,Os06g0492000 OSNPB_060492000 ENOG411DTRM Q8L610 Q8L610_ARATH RING/U-box superfamily protein (Uncharacterized protein At5g01960) 47791 RING/U-box superfamily protein (Uncharacterized protein At5g01960) integral component of membrane [GO:0016021] locus:2185088; AT5G01960 RING finger and transmembrane domain-containing protein 2-like Os01g0168400 protein,Os05g0316000 protein Q5VQF9,Q0DJ87 Q5VQF9_ORYSJ,Q0DJ87_ORYSJ Os01g0168400 Os01g0168400 OJ1276_B06.18 OSNPB_010168400,Os05g0316000 Os05g0316000 OsJ_18030 OSNPB_050316000 ENOG411DTRJ Q9M2Q4,Q9XIK4,F4J4L4 NT102_ARATH,NT101_ARATH,F4J4L4_ARATH RNA cytidine acetyltransferase 2 (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase 2),RNA cytidine acetyltransferase 1 (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase 1),RNA cytidine acetyltransferase (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase) FUNCTION: RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. {ECO:0000255|HAMAP-Rule:MF_03211}.,FUNCTION: RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. {ECO:0000256|HAMAP-Rule:MF_03211}. 2.3.1.- 115476,115619,114951 RNA cytidine acetyltransferase 2 (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase 2),RNA cytidine acetyltransferase 1 (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase 1),RNA cytidine acetyltransferase (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase) 90S preribosome [GO:0030686]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; rRNA cytidine N-acetyltransferase activity [GO:1990883]; tRNA binding [GO:0000049]; tRNA N-acetyltransferase activity [GO:0051392]; rRNA acetylation involved in maturation of SSU-rRNA [GO:1904812]; tRNA acetylation [GO:0051391]; tRNA wobble cytosine modification [GO:0002101],nucleolus [GO:0005730]; ATP binding [GO:0005524]; N-acetyltransferase activity [GO:0008080]; ribosomal small subunit biogenesis [GO:0042274]; rRNA modification [GO:0000154]; tRNA acetylation [GO:0051391] locus:2095828;,locus:2194579; AT3G57940,AT1G10490 UPF0202 protein Os12g0170700 protein Q0IPS3 Q0IPS3_ORYSJ Os12g0170700 Os12g0170700 OSNPB_120170700 ENOG411DTRK ycf4 P56788 YCF4_ARATH Photosystem I assembly protein Ycf4 FUNCTION: Seems to be required for the assembly of the photosystem I complex. {ECO:0000255|HAMAP-Rule:MF_00437}. 21407 Photosystem I assembly protein Ycf4 chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; unfolded protein binding [GO:0051082]; photosystem I assembly [GO:0048564] locus:504954675; ATCG00520 Seems to be required for the assembly of the photosystem I complex Photosystem I assembly protein Ycf4 P0C515 YCF4_ORYSJ ycf4 LOC_Osp1g00460 Nip069 FUNCTION: Seems to be required for the assembly of the photosystem I complex. {ECO:0000255|HAMAP-Rule:MF_00437}. ENOG411DTRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TMS membrane family protein Os01g0179800 protein (cDNA clone:J023033E12, full insert sequence) Q5VR48 Q5VR48_ORYSJ Os01g0179800 Os01g0179800 OJ1174_D05.1 OSNPB_010179800 P0406H10.24 ENOG411DTRI ULP1B,ULP1A,ESD4 O65278,Q8GYL3,Q94F30,A0A1P8B4F2 ULP1B_ARATH,ULP1A_ARATH,ESD4_ARATH,A0A1P8B4F2_ARATH Putative ubiquitin-like-specific protease 1B (EC 3.4.22.68),Ubiquitin-like-specific protease 1A (EC 3.4.22.68),Ubiquitin-like-specific protease ESD4 (EC 3.4.22.68) (Protein EARLY IN SHORT DAYS 4) (AtESD4),Cysteine proteinases superfamily protein DISRUPTION PHENOTYPE: Early flowering under both long and short days and pleiotropic alterations in shoot development. {ECO:0000269|PubMed:14507998, ECO:0000269|PubMed:17513499}. Decreased mRNA levels of the floral repressors FLC and MAF4 and increased mRNA levels of the floral activators FT and SOC1.,Increase in SUMO conjugates and decrease in free SUMO.,Similar to nua-1 and esd4-2 single mutants. Have even shorter stamens and reduced fertility than the single mutants. Dwarf; Thin inflorescence stems-G. Coupland-2011,Dwarf; Early flowering independent of photoperiod-G. Coupland-2002 FUNCTION: Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. {ECO:0000250}.,FUNCTION: Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, and very inefficiently of SUM3. Seems to be the only ULP1 able to cleave SUM3 precursors. Cleaves SUMO peptides better than SUMO-conjugated proteins. {ECO:0000269|PubMed:16740136}.,FUNCTION: Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time. {ECO:0000269|PubMed:14507998, ECO:0000269|PubMed:16740136}. R-ATH-3065679;R-ATH-6791226; 3.4.22.68; 3.4.22.68 39695,58169,56426,47260 Putative ubiquitin-like-specific protease 1B (EC 3.4.22.68),Ubiquitin-like-specific protease 1A (EC 3.4.22.68),Ubiquitin-like-specific protease ESD4 (EC 3.4.22.68) (Protein EARLY IN SHORT DAYS 4) (AtESD4),Cysteine proteinases superfamily protein nucleus [GO:0005634]; endopeptidase activity [GO:0004175]; SUMO-specific protease activity [GO:0016929]; protein desumoylation [GO:0016926],nucleus [GO:0005634]; plasmodesma [GO:0009506]; endopeptidase activity [GO:0004175]; SUMO-specific protease activity [GO:0016929]; protein desumoylation [GO:0016926],nuclear membrane [GO:0031965]; nucleus [GO:0005634]; endopeptidase activity [GO:0004175]; SUMO-specific protease activity [GO:0016929]; positive regulation of flower development [GO:0009911]; protein desumoylation [GO:0016926]; regulation of flower development [GO:0009909],cysteine-type peptidase activity [GO:0008234] TISSUE SPECIFICITY: Expressed in seedlings, leaves, shoots, flowers and roots. {ECO:0000269|PubMed:14507998}. locus:2077632;,locus:2130864; AT4G00690,AT3G06910,AT4G15880 protease Os03g0344300 protein (Ulp1 protease family, C-terminal catalytic domain containing protein, expressed) (cDNA clone:J033024M21, full insert sequence),Os01g0355900 protein (Putative SUMO protease) (cDNA clone:J023041L20, full insert sequence),Os03g0344300 protein Q10LL2,Q9FP66,A0A0P0VXB2 Q10LL2_ORYSJ,Q9FP66_ORYSJ,A0A0P0VXB2_ORYSJ Os03g0344300 LOC_Os03g22400 OSNPB_030344300,Os01g0355900 Os01g0355900 B1157F09.13 OsJ_01720 OSNPB_010355900 P0458A05.31,Os03g0344300 OSNPB_030344300 ENOG411DTRV MIP3,MAG2-interacting protein 3 F4IP69,A0A1P8AY33,F4IP68 MIP3_ARATH,A0A1P8AY33_ARATH,F4IP68_ARATH Sec1 family domain-containing protein MIP3 (MAG2-interacting protein 3),Vesicle docking protein DISRUPTION PHENOTYPE: Accumulation of the precursors of the two major storage proteins albumin 2S and globulin 12S in dry seeds. {ECO:0000269|PubMed:24118572}. FUNCTION: Required for proper maturation of seed storage proteins. Forms a complex with MAG2, ZW10/MIP1 and MIP2 on the endoplasmic reticulum that may be responsible for efficient transport of seed storage proteins. {ECO:0000269|PubMed:24118572}. 91703,85409,95022 Sec1 family domain-containing protein MIP3 (MAG2-interacting protein 3),Vesicle docking protein endoplasmic reticulum membrane [GO:0005789]; vacuole [GO:0005773]; protein maturation [GO:0051604]; protein transport [GO:0015031]; vacuolar protein processing [GO:0006624]; vesicle docking involved in exocytosis [GO:0006904],vesicle docking involved in exocytosis [GO:0006904] locus:2041594; AT2G42700 NA Expressed protein (Os11g0169100 protein) Q2RA23 Q2RA23_ORYSJ Os11g0169100 LOC_Os11g06810 Os11g0169100 OSNPB_110169100 ENOG411DTRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os12g0639500 protein,Os12g0639400 protein (Fragment),Os12g0483600 protein (Fragment) Q0ILK7,Q0ILK8,A0A0P0YA73 Q0ILK7_ORYSJ,Q0ILK8_ORYSJ,A0A0P0YA73_ORYSJ Os12g0639500 Os12g0639500 OSNPB_120639500,Os12g0639400 Os12g0639400 OSNPB_120639400,Os12g0483600 OSNPB_120483600 ENOG411DTRT MTN1,MTN2,ATMTAN2 Q9T0I8,Q7XA67,A0A1P8B8G8,A0A1P8B8H6,A0A1P8B8G4 MTN1_ARATH,MTN2_ARATH,A0A1P8B8G8_ARATH,A0A1P8B8H6_ARATH,A0A1P8B8G4_ARATH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 (AtMTN1) (EC 3.2.2.9) (5'-methylthioadenosine nucleosidase) (MTA nucleosidase) (MTA/SAH nucleosidase 1) (AtMTAN1) (S-adenosylhomocysteine nucleosidase) (AdoHcy nucleosidase) (SAH nucleosidase) (SRH nucleosidase),5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 (AtMTN2) (EC 3.2.2.9) (5'-methylthioadenosine nucleosidase) (MTA nucleosidase) (MTA/SAH nucleosidase 2) (AtMTAN2) (S-adenosylhomocysteine nucleosidase) (AdoHcy nucleosidase) (SAH nucleosidase) (SRH nucleosidase),Phosphorylase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. Not able to grow with methylthioadenosine (MTA) as unique source of sulfur. {ECO:0000269|PubMed:20345605}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20345605}. Reduced growth with MTA as source of nitrogen-M. Sauter-2010 FUNCTION: Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in 5'-methylthioadenosine (MTA) to adenine and 5'-methylthioribose. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis. Inactive towards S-adenosylhomocysteine (SAH/AdoHcy). {ECO:0000269|PubMed:17144895, ECO:0000269|PubMed:18342331, ECO:0000269|PubMed:20345605}.,FUNCTION: Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis. {ECO:0000269|PubMed:17144895, ECO:0000269|PubMed:18342331, ECO:0000269|PubMed:20345605, ECO:0000269|PubMed:20554051}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (hydrolase route): step 1/2. ARA:AT4G38800-MONOMER;,ARA:AT4G34840-MONOMER; 2.4.2.28;3.2.2.9; 3.2.2.9 28451,27462,21007,21713,25175 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 (AtMTN1) (EC 3.2.2.9) (5'-methylthioadenosine nucleosidase) (MTA nucleosidase) (MTA/SAH nucleosidase 1) (AtMTAN1) (S-adenosylhomocysteine nucleosidase) (AdoHcy nucleosidase) (SAH nucleosidase) (SRH nucleosidase),5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 (AtMTN2) (EC 3.2.2.9) (5'-methylthioadenosine nucleosidase) (MTA nucleosidase) (MTA/SAH nucleosidase 2) (AtMTAN2) (S-adenosylhomocysteine nucleosidase) (AdoHcy nucleosidase) (SAH nucleosidase) (SRH nucleosidase),Phosphorylase superfamily protein cytosol [GO:0005829]; plasma membrane [GO:0005886]; adenosylhomocysteine nucleosidase activity [GO:0008782]; methylthioadenosine nucleosidase activity [GO:0008930]; L-methionine salvage from methylthioadenosine [GO:0019509]; nucleoside metabolic process [GO:0009116]; reproduction [GO:0000003]; vasculature development [GO:0001944],adenosylhomocysteine nucleosidase activity [GO:0008782]; methylthioadenosine nucleosidase activity [GO:0008930]; L-methionine salvage from methylthioadenosine [GO:0019509]; nucleoside metabolic process [GO:0009116]; reproduction [GO:0000003]; vasculature development [GO:0001944],catalytic activity [GO:0003824]; nucleoside metabolic process [GO:0009116] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, cauline leaves and flowers. {ECO:0000269|PubMed:18945934}. locus:2141806;,locus:2116925; AT4G38800,AT4G34840 nucleosidase Methylthioadenosine/S-adenosyl homocysteine nucleosidase (Os06g0112200 protein) (cDNA clone:001-039-H06, full insert sequence) (cDNA clone:J013056A05, full insert sequence) Q9LHZ0 Q9LHZ0_ORYSJ Os06g0112200 Os06g0112200 OsJ_19870 OSNPB_060112200 P0029D06.24 ENOG411DTRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Os01g0771000 protein (cDNA clone:J023015J20, full insert sequence),Os05g0510100 protein,Os05g0348433 protein Q94EE1,Q6L4V8,B9FNZ6 Q94EE1_ORYSJ,Q6L4V8_ORYSJ,B9FNZ6_ORYSJ Os01g0771000 OSNPB_010771000 P0665A11.26,Os05g0510100 Os05g0510100 OJ1005_B11.1 OsJ_19153 OSJNBb0108E17.22 OSNPB_050510100,Os05g0348433 OsJ_18142 OSNPB_050348433 ENOG411DTRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chorismate binding enzyme Mitochondrial outer membrane protein porin 1 (Voltage-dependent anion-selective channel protein 1) (OsVDAC1),Os09g0361400 protein (cDNA clone:J013126C04, full insert sequence),Os09g0361500 protein Q6K548,B7EKD7,A0A0N7KQN3 VDAC1_ORYSJ,B7EKD7_ORYSJ,A0A0N7KQN3_ORYSJ VDAC1 Os09g0361400 LOC_Os09g19734 P0711F01.56-1,Os09g0361400 OSNPB_090361400,Os09g0361500 OSNPB_090361500 FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). {ECO:0000250}. ENOG411DTRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RER1A-like Protein RER1 Q69IX0 Q69IX0_ORYSJ B1100F03.101 B1052H09.123 Os08g0309300 OsJ_26845 OSNPB_080309300 FUNCTION: Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. {ECO:0000256|PIRNR:PIRNR016013}. ENOG411DTRP SCY1 Q38885 SCY1_ARATH Preprotein translocase subunit SCY1, chloroplastic (CpSecY) DISRUPTION PHENOTYPE: Seedling lethal. Albino seedlings with yellow and translucent (glassy) lateral organs when grown heterotrophically. {ECO:0000269|PubMed:21051552}. Seedling lethal; Albino embryos-D. Fernandez-2011 FUNCTION: Involved in protein export. Probably interacts with other proteins to allow the translocation of proteins across the chloroplast thylakoid membranes. Required for normal greening during embryogenesis. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity). {ECO:0000250, ECO:0000269|PubMed:21051552}. MISCELLANEOUS: Cannot substitute for SCY2. Phagosome (04145),Protein export (03060),Vibrio cholerae infection (05110),Protein processing in endoplasmic reticulum (04141) 59492 Preprotein translocase subunit SCY1, chloroplastic (CpSecY) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; thylakoid membrane organization [GO:0010027] locus:2054038; AT2G18710 central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7 and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity) Preprotein translocase subunit SECY, chloroplastic (CpSecY),Os08g0254500 protein (Fragment) Q6ZG25,A0A0N7KPJ2 SECY_ORYSJ,A0A0N7KPJ2_ORYSJ SECY Os08g0254500 LOC_Os08g15460 OJ1112_D12.8 OJ1575_B01.20 OsJ_26630,Os08g0254500 OSNPB_080254500 FUNCTION: The central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity). {ECO:0000250}. ENOG411DTRQ MTG10.17 Q9FIS4 Q9FIS4_ARATH ATP-dependent Clp protease ATP-binding subunit (At5g62140) 26439 ATP-dependent Clp protease ATP-binding subunit (At5g62140) chloroplast [GO:0009507]; ATP binding [GO:0005524]; peptidase activity [GO:0008233] locus:2174083; AT5G62140 NA Os02g0677600 protein (cDNA clone:J013132B11, full insert sequence) Q6EP75 Q6EP75_ORYSJ Os02g0677600 Os02g0677600 OsJ_07916 OSJNBb0005A04.18 OSNPB_020677600 P0135D07.45 ENOG411DTRZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase OSJNBa0044K18.34 protein (OSJNBb0011N17.1 protein) (Os04g0480500 protein),Os01g0162800 protein,Os01g0161300 protein Q7XUR0,A0A0N7KCD8,A0A0P0UZ20 Q7XUR0_ORYSJ,A0A0N7KCD8_ORYSJ,A0A0P0UZ20_ORYSJ Os04g0480500 Os04g0480500 OSJNBa0044K18.34 OSJNBb0011N17.1 OSNPB_040480500,Os01g0162800 OSNPB_010162800,Os01g0161300 OSNPB_010161300 ENOG411DTRX Q94B59 PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial 46809 Pentatricopeptide repeat-containing protein At5g09450, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2184807; AT5G09450 Pentatricopeptide repeat-containing protein At5g09450 Os04g0450200 protein (Fragment) Q0JCT6 Q0JCT6_ORYSJ Os04g0450200 Os04g0450200 OSNPB_040450200 ENOG411DTRY basic leucine-zipper 29,basic leucine-zipper 31,basic leucine-zipper 30,basic leucine-zipper 33,UNE4,BZIP29 Q8H1F0,Q9SL54,Q9SIG8,Q9SKG1,Q9SKF8,Q9T0J7,F4IGJ9,B3H7M2 Q8H1F0_ARATH,Q9SL54_ARATH,Q9SIG8_ARATH,Q9SKG1_ARATH,Q9SKF8_ARATH,Q9T0J7_ARATH,F4IGJ9_ARATH,B3H7M2_ARATH Basic-leucine zipper (BZIP) transcription factor family protein (Uncharacterized protein At4g38900),Basic-leucine zipper (BZIP) transcription factor family protein (Putative bZIP transcription factor),Basic-leucine zipper (BZIP) transcription factor family protein (Putative bZIP transcription factor) (Transcription factor bZIP30),BZIP transcription factor family protein (Basic-leucine zipper (BZIP) transcription factor family protein),Basic-leucine zipper (BZIP) transcription factor family protein (Putative VSF-1-like b-ZIP transcription factor),Basic-leucine zipper (BZIP) transcription factor family protein (Transcription factor bZIP29) (Uncharacterized protein AT4g38900),Basic-leucine zipper (BZIP) transcription factor family protein 60414,29696,56326,30069,33320,61157,49634,57036 Basic-leucine zipper (BZIP) transcription factor family protein (Uncharacterized protein At4g38900),Basic-leucine zipper (BZIP) transcription factor family protein (Putative bZIP transcription factor),Basic-leucine zipper (BZIP) transcription factor family protein (Putative bZIP transcription factor) (Transcription factor bZIP30),BZIP transcription factor family protein (Basic-leucine zipper (BZIP) transcription factor family protein),Basic-leucine zipper (BZIP) transcription factor family protein (Putative VSF-1-like b-ZIP transcription factor),Basic-leucine zipper (BZIP) transcription factor family protein (Transcription factor bZIP29) (Uncharacterized protein AT4g38900),Basic-leucine zipper (BZIP) transcription factor family protein transcription factor activity, sequence-specific DNA binding [GO:0003700],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700],cytosol [GO:0005829]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700],cytosol [GO:0005829]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; double fertilization forming a zygote and endosperm [GO:0009567],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; reproductive shoot system development [GO:0090567],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of gene expression [GO:0010629]; positive regulation of gene expression [GO:0010628]; reproductive shoot system development [GO:0090567]; response to abscisic acid [GO:0009737] locus:2056442;,locus:2057030;,locus:2057300;,locus:2141826;,locus:2047082; AT4G38900,AT2G13150,AT2G21230,AT2G12900,AT2G12940 Transcription factor BZIP family transcription factor, putative, expressed (Os03g0127500 protein) (Putative bZIP transcription factor),Os08g0543900 protein Q8S5V5,Q0J3Z8 Q8S5V5_ORYSJ,Q0J3Z8_ORYSJ LOC_Os03g03550 Os03g0127500 OJ1015F07.12 OSNPB_030127500,Os08g0543900 Os08g0543900 OSNPB_080543900 ENOG411DTR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lysine histidine transporter Os08g0127100 protein (Putative histidine amino acid transporter) (cDNA clone:J013002G10, full insert sequence) (cDNA clone:J033080E11, full insert sequence) Q6ZK52 Q6ZK52_ORYSJ Os08g0127100 Os08g0127100 OJ1163_G08.25 OsJ_25900 OSNPB_080127100 ENOG411DTR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0638400 protein (Fragment) A0A0P0YD45 A0A0P0YD45_ORYSJ Os12g0638400 OSNPB_120638400 ENOG411DTR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0530700 protein Q652K9,A0A0P0XPL2 Q652K9_ORYSJ,A0A0P0XPL2_ORYSJ Os09g0530700 OJ1254_E07.2-1 OSNPB_090530700,Os09g0530700 OSNPB_090530700 ENOG411DTR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DTR2 Q8L7S2,Q8L7Z7,A0A1I9LQJ1,F4IU21 Q8L7S2_ARATH,Q8L7Z7_ARATH,A0A1I9LQJ1_ARATH,F4IU21_ARATH AT3g60070/T2O9_50 (Major facilitator superfamily protein),Major facilitator superfamily protein 50949,50333,36899,36835 AT3g60070/T2O9_50 (Major facilitator superfamily protein),Major facilitator superfamily protein integral component of membrane [GO:0016021] locus:2050626;,locus:2101442; AT2G44280,AT3G60070 Inherit from KOG: Major facilitator superfamily domain containing Os07g0578200 protein (cDNA clone:J023073D03, full insert sequence) Q0D566 Q0D566_ORYSJ Os07g0578200 Os07g0578200 OSNPB_070578200 ENOG411DTR3 PAPS3 Q56XM9,F4KDR9 PAPS3_ARATH,F4KDR9_ARATH Nuclear poly(A) polymerase 3 (PAP(III)) (Poly(A) polymerase III) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 3),Uncharacterized protein DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:19956626}. Gametophyte defective-A. Hunt-2009 FUNCTION: Essential protein (PubMed:19956626). Polymerase that creates the 3'-poly(A) tail of mRNA's (PubMed:15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity). {ECO:0000250|UniProtKB:P25500, ECO:0000269|PubMed:15297145, ECO:0000269|PubMed:19956626}. 2.7.7.19; 2.7.7.19 57704,41587 Nuclear poly(A) polymerase 3 (PAP(III)) (Poly(A) polymerase III) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 3),Uncharacterized protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; polynucleotide adenylyltransferase activity [GO:0004652]; RNA binding [GO:0003723]; mRNA polyadenylation [GO:0006378],nucleus [GO:0005634]; polynucleotide adenylyltransferase activity [GO:0004652]; RNA polyadenylation [GO:0043631] TISSUE SPECIFICITY: Expressed in leaves (mostly in petioles and tips), cotyledon, roots (tips, vascular tissue of the radicle, and throughout the root tissue excluding the elongation zone), stems, and flowers (restricted to the stigma and the pollen in mature anthers) (PubMed:15297145, PubMed:19956626). Active in the primary and secondary root systems (PubMed:19956626). {ECO:0000269|PubMed:15297145, ECO:0000269|PubMed:19956626}. locus:2084274;,locus:2181843; AT3G06560,AT5G02670 Poly(A) polymerase predicted RNA binding domain Os03g0313300 protein (cDNA, clone: J065099G09, full insert sequence),Os07g0688500 protein B7F8L5,A0A0N7KP35 B7F8L5_ORYSJ,A0A0N7KP35_ORYSJ Os03g0313300 OSNPB_030313300,Os07g0688500 OSNPB_070688500 ENOG411DTR0 MNA5.1 Q9FKQ8,F4KHW8 Q9FKQ8_ARATH,F4KHW8_ARATH LMBR1-like membrane protein (Uncharacterized protein At5g65290),LMBR1-like membrane protein 83168,62700 LMBR1-like membrane protein (Uncharacterized protein At5g65290),LMBR1-like membrane protein integral component of membrane [GO:0016021] locus:2168205; AT5G65290 LMBR1 domain-containing protein 2 homolog A-like Os02g0758100 protein (Fragment),Os06g0218900 protein (Fragment) A0A0N7KG47,A0A0P0WU10 A0A0N7KG47_ORYSJ,A0A0P0WU10_ORYSJ Os02g0758100 OSNPB_020758100,Os06g0218900 OSNPB_060218900 ENOG411DTR1 LECRK71,LecRK-VII.1 Q9S9U1,A0A1P8B740 LRK71_ARATH,A0A1P8B740_ARATH L-type lectin-domain containing receptor kinase VII.1 (LecRK-VII.1) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein 2.7.11.1 76693,64368 L-type lectin-domain containing receptor kinase VII.1 (LecRK-VII.1) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] locus:2138381; AT4G04960 L-type lectin-domain containing receptor kinase NA NA NA NA NA NA NA ENOG411DTR8 A0A1P8B4X0,A0A1P8B4Y0,A0A1P8B4Z2,A0A1P8B4W8,A0A1P8B4W1,F4JIJ1 A0A1P8B4X0_ARATH,A0A1P8B4Y0_ARATH,A0A1P8B4Z2_ARATH,A0A1P8B4W8_ARATH,A0A1P8B4W1_ARATH,F4JIJ1_ARATH Fanconi anemia group D2 protein 165725,163610,163428,165264,162798,166337 Fanconi anemia group D2 protein DNA repair [GO:0006281],chloroplast [GO:0009507]; condensed chromosome [GO:0000793]; nucleus [GO:0005634]; DNA polymerase binding [GO:0070182]; DNA repair [GO:0006281] locus:2129545; AT4G14970 Fanconi anemia group D2 protein Os07g0154400 protein A0A0P0X2T8 A0A0P0X2T8_ORYSJ Os07g0154400 OSNPB_070154400 ENOG411DTR9 HEI10 F4HRI2,A0A1P8AS84 HEI10_ARATH,A0A1P8AS84_ARATH E3 ubiquitin-protein ligase CCNB1IP1 homolog (EC 2.3.2.27) (RING finger-containing protein HEI10) (RING-type E3 ubiquitin transferase HEI10),RING/U-box superfamily protein DISRUPTION PHENOTYPE: Normal vegetative growth but fertility defects leading to reduced seed number per silique, due to abortion of male and female gametophytes characterized by abnormal tetrahedral structure becoming either asymmetric tetrads or polyads containing more than four products, because of impaired class I crossover (CO) formation during meiosis. {ECO:0000269|PubMed:22844245}. FUNCTION: Ubiquitin E3 ligase required for class I crossing-over (CO) formation during meiosis. {ECO:0000269|PubMed:22844245}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34765,33658 E3 ubiquitin-protein ligase CCNB1IP1 homolog (EC 2.3.2.27) (RING finger-containing protein HEI10) (RING-type E3 ubiquitin transferase HEI10),RING/U-box superfamily protein chiasma [GO:0005712]; chromosome [GO:0005694]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; chiasma assembly [GO:0051026]; protein ubiquitination [GO:0016567]; reciprocal DNA recombination [GO:0035825]; reciprocal meiotic recombination [GO:0007131] TISSUE SPECIFICITY: Expressed mostly in flower buds and roots. {ECO:0000269|PubMed:22844245}. locus:2024917; AT1G53490 dna binding protein E3 ubiquitin-protein ligase CCNB1IP1 homolog (EC 2.3.2.27) (RING finger-containing protein HEI10) (RING-type E3 ubiquitin transferase HEI10),Os02g0232100 protein (Fragment),Os02g0232100 protein I6PL68,A0A0P0VGT0,A0A0P0VGR2 HEI10_ORYSJ,A0A0P0VGT0_ORYSJ,A0A0P0VGR2_ORYSJ HEI10 Os02g0232100 LOC_Os02g13810 OJ1705_E12.17 OsJ_05990,Os02g0232100 OSNPB_020232100 DISRUPTION PHENOTYPE: The mutants hei10-1 and hei10-2 have normal vegetative growth but exhibited complete sterility, due to shrunken and inviable pollen as well as sterile female gametes. Reduced chiasma frequency, with a random distribution among cells of remaining chiasmata, but normal early recombination events and synaptonemal complex (SC) formation. {ECO:0000269|PubMed:22792078}. FUNCTION: Ubiquitin E3 ligase required for class I crossing-over (CO) formation during meiosis. {ECO:0000269|PubMed:22792078}. ENOG411EDY7 RABC2B,RABC2b Q9SF92,A0A1I9LP95 RAC2B_ARATH,A0A1I9LP95_ARATH Ras-related protein RABC2b (AtRABC2b) (Ras-related protein Rab18C) (AtRab18C),RAB GTPase homolog C2B FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-6798695;R-ATH-6811436;R-ATH-8876198; 22904,21899 Ras-related protein RABC2b (AtRABC2b) (Ras-related protein Rab18C) (AtRab18C),RAB GTPase homolog C2B Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2085084; AT3G09910 RAB NA NA NA NA NA NA NA ENOG411E4K9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) Q652A1 IAA26_ORYSJ IAA26 Os09g0527700 LOC_Os09g35870 OJ1439_F07.27 OsJ_30083 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E4K6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin domain-containing protein Os01g0731000 protein,Os09g0345000 protein,Os05g0529400 protein (cDNA clone:001-122-C06, full insert sequence),Os05g0529400 protein (Fragment) Q94EA5,Q6EQH2,Q75K68,A0A0N7KL48 Q94EA5_ORYSJ,Q6EQH2_ORYSJ,Q75K68_ORYSJ,A0A0N7KL48_ORYSJ Os01g0731000 Os01g0731000 OsJ_03349 OSNPB_010731000 P0435H01.32,Os09g0345000 OsJ_28981 OSJNBb0085I16.13 OSNPB_090345000,Os05g0529400 OJ1131_E09.2 OJ1187_E11.18 OsJ_19294 OSNPB_050529400,Os05g0529400 OSNPB_050529400 ENOG411E4K7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os02g0512000 protein (cDNA clone:002-151-B01, full insert sequence) Q6K613 Q6K613_ORYSJ Os02g0512000 OJ1789_D08.2 OSJNBa0001A11.30 OSNPB_020512000 ENOG411E4K5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16),Os05g0186900 protein P0C127,A0A0P0WIR1 IAA16_ORYSJ,A0A0P0WIR1_ORYSJ IAA16 Os05g0186900 LOC_Os05g09480,Os05g0186900 OSNPB_050186900 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E4K2 A0A1P8ATJ8,Q0WPH4,Q9SJ18,Q9SJ16,A0A1P8B1Q5,F4III1 A0A1P8ATJ8_ARATH,Q0WPH4_ARATH,Q9SJ18_ARATH,Q9SJ16_ARATH,A0A1P8B1Q5_ARATH,F4III1_ARATH Cysteine/histidine-rich C1 domain protein,Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g21840),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g21810),Cysteine/Histidine-rich C1 domain family protein (Expressed protein) (Uncharacterized protein At2g21830) (Uncharacterized protein F7D8.15; At2g21830),Cysteine/Histidine-rich C1 domain family protein 23658,88949,15056,65590,56390,90066 Cysteine/histidine-rich C1 domain protein,Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g21840),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g21810),Cysteine/Histidine-rich C1 domain family protein (Expressed protein) (Uncharacterized protein At2g21830) (Uncharacterized protein F7D8.15; At2g21830),Cysteine/Histidine-rich C1 domain family protein intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556] locus:2052551;,locus:2052499;,locus:2052531;,locus:2052571; AT2G21840,AT2G21810,AT2G21830,AT2G21850 C1 NA NA NA NA NA NA NA ENOG411E4K3 CURT1B Q8LCA1 CUT1B_ARATH Protein CURVATURE THYLAKOID 1B, chloroplastic (Photosystem I protein P) (Thylakoid membrane phosphoprotein 14 kDa) DISRUPTION PHENOTYPE: No effect on growth behavior, leaf coloration, grana stacks or photochemical efficiency of photosystem II. Curt1a, curt1b, curt1c and curt1d quadruple mutant shows disorganized thylakoids with extended stretches of unstacked membranes and broader stacks made up of fewer layers. {ECO:0000269|PubMed:23839788}. FUNCTION: Determines thylakoid architecture by inducing membrane curvature. {ECO:0000269|PubMed:23839788}. 18482 Protein CURVATURE THYLAKOID 1B, chloroplastic (Photosystem I protein P) (Thylakoid membrane phosphoprotein 14 kDa) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast photosystem I [GO:0030093]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; thylakoid [GO:0009579]; DNA binding [GO:0003677]; protein domain specific binding [GO:0019904]; photosynthetic electron transport in photosystem I [GO:0009773]; response to abscisic acid [GO:0009737] locus:2044335; AT2G46820 Thylakoid membrane phosphoprotein 14 kDa Expressed protein (Os10g0536500 protein) (cDNA clone:J013075C23, full insert sequence),Os07g0469100 protein (cDNA clone:001-034-E09, full insert sequence) (cDNA clone:J013068P10, full insert sequence),Os09g0250300 protein (Fragment) Q8W2X4,Q6ZL81,A0A0P0XIX9 Q8W2X4_ORYSJ,Q6ZL81_ORYSJ,A0A0P0XIX9_ORYSJ OSJNBb0060I05.14 OSJNBa0040D23.6 LOC_Os10g39150 Os10g0536500 OSNPB_100536500,Os07g0469100 Os07g0469100 OJ1115_C05.14 OsJ_24183 OSNPB_070469100,Os09g0250300 OSNPB_090250300 ENOG411E4K0 MQN23.11 Q9FJP8,A0A1P8BHF8 Q9FJP8_ARATH,A0A1P8BHF8_ARATH At5g65170 (VQ motif-containing protein),VQ motif-containing protein 39235,33304 At5g65170 (VQ motif-containing protein),VQ motif-containing protein locus:2171785; AT5G65170 VQ motif Os08g0409500 protein (cDNA clone:002-147-D10, full insert sequence) Q6ZAK7 Q6ZAK7_ORYSJ Os08g0409500 Os08g0409500 OsJ_27270 OSNPB_080409500 P0042B03.23 ENOG411E4KZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance response protein Dirigent protein Q2R0H3 Q2R0H3_ORYSJ Os11g0645400 LOC_Os11g42550 Os11g0645300 OSNPB_110645400 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E4KX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ocs element-binding factor NA NA NA NA NA NA NA ENOG411E4KY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0844900 protein Q0JHT1 Q0JHT1_ORYSJ Os01g0844900 Os01g0844900 OsJ_04055 OSNPB_010844900 ENOG411E4KV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4KT MKP11.4 Q9M9N5,Q9FFJ0 Q9M9N5_ARATH,Q9FFJ0_ARATH B-cell receptor-associated-like protein (T17B22.15 protein) (Uncharacterized protein At3g03160),B-cell receptor-associated-like protein (Gb|AAF26109.1) (Uncharacterized protein At5g17190) 14843,14885 B-cell receptor-associated-like protein (T17B22.15 protein) (Uncharacterized protein At3g03160),B-cell receptor-associated-like protein (Gb|AAF26109.1) (Uncharacterized protein At5g17190) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; protein localization to endoplasmic reticulum exit site [GO:0070973] locus:2097775;,locus:2167170; AT3G03160,AT5G17190 erwinia induced protein 2 Erwinia induced protein 2 (Os02g0734900 protein) (cDNA clone:001-025-B07, full insert sequence) Q6Z756 Q6Z756_ORYSJ Os02g0734900 OSNPB_020734900 P0487D09.5 ENOG411E4KU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat shock protein 17.9 kDa heat shock protein 2 (OsHsp17.9B),Os01g0135900 protein Q943E9,A0A0P0UXX2 HS17B_ORYSJ,A0A0P0UXX2_ORYSJ HSP17.9B Os01g0135900 LOC_Os01g04350 P0443D08.1,Os01g0135900 OSNPB_010135900 ENOG411E4KR PMEI3 Q84WE4,A0A1P8BFL4 PMEI3_ARATH,A0A1P8BFL4_ARATH Pectinesterase inhibitor 3 (Pectin methylesterase inhibitor 3) (AtPMEI3),Plant invertase/pectin methylesterase inhibitor superfamily protein FUNCTION: Pectin methylesterase (PME) inhibitor that regulates de-methylesterification of pectins in the apical meristem and affects primordia formation and phyllotactic patterning. {ECO:0000269|PubMed:19097903}. 22329,26227 Pectinesterase inhibitor 3 (Pectin methylesterase inhibitor 3) (AtPMEI3),Plant invertase/pectin methylesterase inhibitor superfamily protein apoplast [GO:0048046]; enzyme inhibitor activity [GO:0004857]; regulation of shoot apical meristem development [GO:1902183],enzyme inhibitor activity [GO:0004857] TISSUE SPECIFICITY: Expressed in apical meristem. {ECO:0000269|PubMed:19097903}. locus:2180484; AT5G20740 21 kDa protein-like NA NA NA NA NA NA NA ENOG411E4KS Q1ECK0,Q9SY38 Q1ECK0_ARATH,Q9SY38_ARATH At1g03730 (Pyrroline-5-carboxylate reductase),Pyrroline-5-carboxylate reductase (Uncharacterized protein AT4g03600) (Uncharacterized protein T5L23.9) 18369,18241 At1g03730 (Pyrroline-5-carboxylate reductase),Pyrroline-5-carboxylate reductase (Uncharacterized protein AT4g03600) (Uncharacterized protein T5L23.9) integral component of membrane [GO:0016021] locus:2020728;,locus:2140685; AT1G03730,AT4G03600 NA NA NA NA NA NA NA NA ENOG411E4KP Q93VK7 Q93VK7_ARATH AT5g14910/F2G14_30 (Heavy metal transport/detoxification superfamily protein) 18956 AT5g14910/F2G14_30 (Heavy metal transport/detoxification superfamily protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; metal ion binding [GO:0046872]; metal ion transport [GO:0030001]; response to cytokinin [GO:0009735] locus:2147795; AT5G14910 NA Os05g0337400 protein A0A0P0WL76 A0A0P0WL76_ORYSJ Os05g0337400 OSNPB_050337400 ENOG411E4KQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0113500 protein (cDNA clone:J023029D02, full insert sequence),Os05g0113500 protein (cDNA clone:J023023G21, full insert sequence) Q75L12,Q0DLA2 Q75L12_ORYSJ,Q0DLA2_ORYSJ Os05g0113500 OsJ_16876 OSJNBb0041A22.8 OSNPB_050113500,Os05g0113500 Os05g0113500 OSNPB_050113500 ENOG411E4KM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0231100 protein (Fragment) A0A0P0Y8E7 A0A0P0Y8E7_ORYSJ Os12g0231100 OSNPB_120231100 ENOG411E4KJ Q9SL96 Q9SL96_ARATH Expressed protein (Uncharacterized protein At2g25670) 35128 Expressed protein (Uncharacterized protein At2g25670) cytosol [GO:0005829] locus:2050333; AT2G25670 Inherit from NOG: Early fruit mRNA Os05g0179800 protein (Unknow protein) Q5KQK6 Q5KQK6_ORYSJ Os05g0179800 Os05g0179800 OsJ_17336 OSNPB_050179800 P0453H11.1 ENOG411E4KI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1442) Os02g0455400 protein (Fragment) A0A0N7KF86 A0A0N7KF86_ORYSJ Os02g0455400 OSNPB_020455400 ENOG411E4KF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E4KG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E4KD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E4KE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E4KB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family HVA22-like protein A0A0P0XMI2 A0A0P0XMI2_ORYSJ Os09g0450600 OSNPB_090450600 ENOG411E4KC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein Q6ZJI9 Q6ZJI9_ORYSJ Os08g0549300 OJ1479_B11.11 OsJ_28193 OSNPB_080549300 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E4KA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0585900 protein Q8GRW3 Q8GRW3_ORYSJ OJ1113_E01.102 OJ1060_D03.129 Os07g0585900 OSNPB_070585900 ENOG411EDY9 TRFL7 Q6R0E4 Q6R0E4_ARATH MYB transcription factor (TRF-like 7) 44344 MYB transcription factor (TRF-like 7) nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; telomeric loop formation [GO:0031627] locus:2033071; AT1G06910 NA NA NA NA NA NA NA NA ENOG411DUXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Os07g0159900 protein (Peptide transporter-like) Q8H558 Q8H558_ORYSJ OJ1714_H10.116 Os07g0159900 OsJ_23159 OSNPB_070159900 P0455F03.47 ENOG411EDYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDYC ACS11 Q9S9U6 1A111_ARATH 1-aminocyclopropane-1-carboxylate synthase 11 (ACC synthase 11) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 11) FUNCTION: 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. MISCELLANEOUS: The stability of ACS proteins, and the regulation of such stability, play a central role in ethylene biosynthesis. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 1/2. 4.4.1.14 51799 1-aminocyclopropane-1-carboxylate synthase 11 (ACC synthase 11) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 11) 1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; pyridoxal phosphate binding [GO:0030170]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12968022}. locus:2134485; AT4G08040 1-aminocyclopropane-1-carboxylate synthase NA NA NA NA NA NA NA ENOG411EDYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0532300 protein A0A0P0X6X2 A0A0P0X6X2_ORYSJ Os07g0532300 OSNPB_070532300 ENOG411ECC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium:sulfate symporter transmembrane region NA NA NA NA NA NA NA ENOG411ECC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411ECC0 CEP3 Q9STL5,A0A1I9LSH0 CEP3_ARATH,A0A1I9LSH0_ARATH KDEL-tailed cysteine endopeptidase CEP3 (EC 3.4.22.-),Cysteine proteinases superfamily protein FUNCTION: Involved in the final stage of developmental programmed cell death and in intercalation of new cells. Cleaves extensins, thus probably supporting the final cell collapse. {ECO:0000269|PubMed:21632425}. 3.4.22.- 40971,33574 KDEL-tailed cysteine endopeptidase CEP3 (EC 3.4.22.-),Cysteine proteinases superfamily protein endoplasmic reticulum [GO:0005783]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603],cysteine-type peptidase activity [GO:0008234] DEVELOPMENTAL STAGE: Expressed during silique development, but limited to the carpels and the pedicel. {ECO:0000269|PubMed:21632425}. TISSUE SPECIFICITY: Expressed in roots, stems, flowers, buds, green siliques, trichomes and near the stomata of cotyledons but not of true leaves. Found at the hypocotyl-root transition zone, in the vascular tissue, along primary and lateral roots, but not in root tips. Never found in the abscission zone of flower organs. {ECO:0000269|PubMed:21632425}. locus:505006391; AT3G48350 Inhibitor_I29 NA NA NA NA NA NA NA ENOG411ECC8 ZHD10 Q9FIW9 ZHD10_ARATH Zinc-finger homeodomain protein 10 (AtZHD10) (Homeobox protein 23) (AtHB-23) FUNCTION: Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}. 36386 Zinc-finger homeodomain protein 10 (AtZHD10) (Homeobox protein 23) (AtHB-23) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of transcription, DNA-templated [GO:0006355]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In young leaves, accumulates in the adaxial domain of leaf primordia and the rib meristem. {ECO:0000269|PubMed:17387478}. TISSUE SPECIFICITY: Mostly expressed in rosettes (e.g. young leaves), flowers (e.g. styles), siliques and inflorescence. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17387478}. locus:2167052; AT5G39760 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411ECCD PUB51 Q9FKG5,A0A1P8BBM2,F4K3J6 PUB51_ARATH,A0A1P8BBM2_ARATH,F4K3J6_ARATH U-box domain-containing protein 51 (Plant U-box protein 51) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein kinase family protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27; 2.7.11.- 90223,92350,90065 U-box domain-containing protein 51 (Plant U-box protein 51) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein kinase family protein chloroplast [GO:0009507]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin-protein transferase activity [GO:0004842],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ubiquitin-protein transferase activity [GO:0004842] locus:2151641; AT5G61560 Universal stress protein family NA NA NA NA NA NA NA ENOG411ECCG NAC049 Q9M844 Q9M844_ARATH NAC domain containing protein 49 (T27C4.7 protein) 22506 NAC domain containing protein 49 (T27C4.7 protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2100855; AT3G04430 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411ECCA Q5XV96,A0A1I9LQ27,A0A1I9LQ28 Q5XV96_ARATH,A0A1I9LQ27_ARATH,A0A1I9LQ28_ARATH U-box kinase family protein 32949,32029,37119 U-box kinase family protein kinase activity [GO:0016301] locus:2082802; AT3G61410 NA NA NA NA NA NA NA NA ENOG411ECCB Q9CA76 Q9CA76_ARATH At1g74370 (Putative RING zinc finger protein) (Putative RING zinc finger protein; 15305-14520) (RING finger family protein) (RING/U-box superfamily protein) 29400 At1g74370 (Putative RING zinc finger protein) (Putative RING zinc finger protein; 15305-14520) (RING finger family protein) (RING/U-box superfamily protein) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872] locus:2019080; AT1G74370 zinc finger NA NA NA NA NA NA NA ENOG411EDYK HIC,KCS14 Q9ZUZ0,Q9SS39 KCS13_ARATH,KCS14_ARATH 3-ketoacyl-CoA synthase 13 (KCS-13) (EC 2.3.1.199) (Protein HIGH CARBON DIOXIDE) (Very long-chain fatty acid condensing enzyme 13) (VLCFA condensing enzyme 13),Probable 3-ketoacyl-CoA synthase 14 (KCS-14) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 14) (VLCFA condensing enzyme 14) Increased stomatal density in response to elevated CO2-A. Hetherington-2000 FUNCTION: Contributes to cuticular wax and suberin biosynthesis (By similarity). Regulates negatively the stomatal development in elevated CO(2) conditions. {ECO:0000250, ECO:0000269|PubMed:11130071}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. 2.3.1.199 52176,51626 3-ketoacyl-CoA synthase 13 (KCS-13) (EC 2.3.1.199) (Protein HIGH CARBON DIOXIDE) (Very long-chain fatty acid condensing enzyme 13) (VLCFA condensing enzyme 13),Probable 3-ketoacyl-CoA synthase 14 (KCS-14) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 14) (VLCFA condensing enzyme 14) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in siliques and flowers. {ECO:0000269|PubMed:18465198}.,TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:18465198}. locus:2062775;,locus:2076254; AT2G46720,AT3G10280 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411EDYT ARR20 Q9LZJ8 ARR20_ARATH Putative two-component response regulator ARR20 FUNCTION: Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. 48460 Putative two-component response regulator ARR20 nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay response regulator activity [GO:0000156]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in mature pistil tip. Also detected in the shoot apical meristem as well as vascular tissue and hydathodes of the leaves. {ECO:0000269|PubMed:15173562}. locus:2081690; AT3G62670 Response regulator receiver domain NA NA NA NA NA NA NA ENOG411EDYU T1E3_60,MUK11.2 Q9LZ27,Q9LZ28,A0A1P8BDR9,A0A1P8BH58,A0A1P8BCP7,A0A1P8BH49,A0A1P8BCP0,A0A1P8BH48,F4JXN9 Q9LZ27_ARATH,Q9LZ28_ARATH,A0A1P8BDR9_ARATH,A0A1P8BH58_ARATH,A0A1P8BCP7_ARATH,A0A1P8BH49_ARATH,A0A1P8BCP0_ARATH,A0A1P8BH48_ARATH,F4JXN9_ARATH Ankyrin repeat family protein (Uncharacterized protein T1E3_60),Ankyrin repeat family protein (Uncharacterized protein T1E3_50),Ankyrin repeat family protein 75340,70621,53403,74677,72788,73023,74439,60781,78275 Ankyrin repeat family protein (Uncharacterized protein T1E3_60),Ankyrin repeat family protein (Uncharacterized protein T1E3_50),Ankyrin repeat family protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; signal transduction [GO:0007165],integral component of membrane [GO:0016021] locus:2175413;,locus:2180228;,locus:2180223; AT5G04700,AT5G04690,AT5G04680 ANK NA NA NA NA NA NA NA ENOG411EDYY RECQL4B,RECQL4A Q9FT70,Q8L840 RQL4B_ARATH,RQL4A_ARATH ATP-dependent DNA helicase Q-like 4B (EC 3.6.4.12) (RecQ-like protein 4B) (AtRecQ4B) (AtRecQl4B),ATP-dependent DNA helicase Q-like 4A (EC 3.6.4.12) (RecQ-like protein 4A) (AtRecQ4A) (AtRecQl4A) (SGS1-like protein) (AtSGS1) DISRUPTION PHENOTYPE: Not mutagen-sensitive, and impaired in hyperrecombination (HR). {ECO:0000269|PubMed:18000056}.,DISRUPTION PHENOTYPE: Enhanced sensitivity to genotoxic stress such as UV light, methyl methanesulfonate (MMS) and mitomycin C (MMC), and hyperrecombination (HR) during cell division. {ECO:0000269|PubMed:16146519, ECO:0000269|PubMed:18000056}. sensitive to methylmethanesulfonate and cis-platin and showed an enhanced homologous recombination level,no phenotype under standard growth conditions. Hypersensitive to UV light. Hypersensitive to methyl methanesulfonate (MMC) a DNA alkylating agent. Enhanced resistance to increasing concentrations of MMC as compared to wild type. Sensitive to DNA damaging agents; Increased homologous recombination frequency-P. Dijkwel-2005 FUNCTION: 3'-5' DNA helicase that may play a role in the repair of DNA (By similarity). Required to promote but not to suppress crossovers. {ECO:0000250, ECO:0000269|PubMed:18000056}.,FUNCTION: 3'-5' DNA helicase involved in DNA repair (PubMed:16146519, PubMed:18000056, PubMed:19096507). Required for the maintenance of genome stability by modulation of the DNA damage response and repression of crossovers. Confers resistance to genotoxic stress (PubMed:16146519, PubMed:18000056). Suppresses spontaneous homologous recombination (HR) events in somatic cells together with its partners RMI1 and TOP3A (PubMed:19096507). Contributes to the maintenance of chromosome integrity during meiosis. Involved in the removal of telomeric bridges that appear to arise during meiotic recombination. Required to resolve or dissolve MSH4-dependent telomeric associations. Does not seem required for chiasma formation (PubMed:21265901). {ECO:0000269|PubMed:16146519, ECO:0000269|PubMed:18000056, ECO:0000269|PubMed:19096507, ECO:0000269|PubMed:21265901}. R-ATH-5693616; 3.6.4.12 128577,133312 ATP-dependent DNA helicase Q-like 4B (EC 3.6.4.12) (RecQ-like protein 4B) (AtRecQ4B) (AtRecQl4B),ATP-dependent DNA helicase Q-like 4A (EC 3.6.4.12) (RecQ-like protein 4A) (AtRecQ4A) (AtRecQl4A) (SGS1-like protein) (AtSGS1) chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; metal ion binding [GO:0046872]; cellular response to cold [GO:0070417]; DNA recombination [GO:0006310]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724],chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; 3'-5' DNA helicase activity [GO:0043138]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; metal ion binding [GO:0046872]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to cold [GO:0070417]; cellular response to DNA damage stimulus [GO:0006974]; chromosome organization [GO:0051276]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724] TISSUE SPECIFICITY: Mostly expressed in roots, seedlings, shoots, shoot apical mersitem, flowers, and siliques. {ECO:0000269|PubMed:11058127, ECO:0000269|PubMed:12856935}.,TISSUE SPECIFICITY: Expressed in roots, seedlings, young leaves, shoots, shoot apical mersitem, inflorescences, flowers, siliques and seeds. {ECO:0000269|PubMed:11058127, ECO:0000269|PubMed:12856935}. locus:2206031;,locus:2197394; AT1G60930,AT1G10930 RQC NA NA NA NA NA NA NA ENOG411DZHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (By similarity) Os07g0688300 protein (Fragment) Q0D3F8 Q0D3F8_ORYSJ Os07g0688300 Os07g0688300 OSNPB_070688300 ENOG411DZHX MLH3 F4JN26,A0A1P8B439,A0A1P8B434,A0A1P8B445,A0A1P8B465,A0A1P8B429,A0A1P8B406,A0A1P8B459 MLH3_ARATH,A0A1P8B439_ARATH,A0A1P8B434_ARATH,A0A1P8B445_ARATH,A0A1P8B465_ARATH,A0A1P8B429_ARATH,A0A1P8B406_ARATH,A0A1P8B459_ARATH DNA mismatch repair protein MLH3 (MutL protein homolog 3),MUTL protein homolog 3 DISRUPTION PHENOTYPE: Reduced fertility and meiotic defects: 60 per cent reduction in crossovers and delayed prophase I progression. {ECO:0000269|PubMed:16467846, ECO:0000269|PubMed:16856855, ECO:0000269|PubMed:21771883}. This double mutant has a lower chiasma frequency than either single mutant but more chiasma than Atrpa1a/Atmsh4 or Atmsh4.,Reduced fertility. Early prophase I from leptotene through to pachytene was indistinguishable from wild type but as the chromosomes desynapsed towards the end of prophase I and began to condense during late diplotene/diakinesis a proportion of the homologous chromosome pairs lack chiasmata and are present as univalents at metaphase I. This resulted in missegregation at the first meiotic division leading to the formation of dyads containing aberrant chromosome numbers. This in turn resulted in aneuploid tetrads following the second meiotic division. Reduced fertility-F. Franklin-2006 FUNCTION: Involved in DNA mismatch repair (MMR), correcting insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of the MutLbeta heterodimer, which probably forms a ternary complex with the MutSbeta heterodimer that initially recognizes the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in promoting meiotic crossing-over and is involved in maintaining the genetic stability of simple sequence repeats by correction of frameshift intermediates. {ECO:0000269|PubMed:16467846, ECO:0000269|PubMed:16856855}. 129285,120965,129034,132045,129586,127984,107646,104743 DNA mismatch repair protein MLH3 (MutL protein homolog 3),MUTL protein homolog 3 chiasma [GO:0005712]; chromosome [GO:0005694]; mismatch repair complex [GO:0032300]; synaptonemal complex [GO:0000795]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; mismatched DNA binding [GO:0030983]; single-stranded DNA binding [GO:0003697]; mismatch repair [GO:0006298]; reciprocal meiotic recombination [GO:0007131],mismatch repair complex [GO:0032300]; ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298]; reciprocal meiotic recombination [GO:0007131],mismatch repair complex [GO:0032300]; ATP binding [GO:0005524]; mismatch repair [GO:0006298]; reciprocal meiotic recombination [GO:0007131] DEVELOPMENTAL STAGE: Expressed during prophase I of meiosis. {ECO:0000269|PubMed:16467846, ECO:0000269|PubMed:16856855}. TISSUE SPECIFICITY: Expressed in reproductive tissues. {ECO:0000269|PubMed:16467846}. locus:2127923; AT4G35520 MutL_C Os09g0551900 protein A0A0P0XQ20 A0A0P0XQ20_ORYSJ Os09g0551900 OSNPB_090551900 ENOG411DZHR GATA9,GATA12 O82632,P69781 GATA9_ARATH,GAT12_ARATH GATA transcription factor 9,GATA transcription factor 12 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.,FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. MISCELLANEOUS: Overexpression of GATA12 induces the formation of ectopic xylem vessel-like elements. {ECO:0000269|PubMed:25265867}. 34346,36489 GATA transcription factor 9,GATA transcription factor 12 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623]; response to light stimulus [GO:0009416] locus:2123738;,locus:2145259; AT4G32890,AT5G25830 gata transcription factor NA NA NA NA NA NA NA ENOG411DZHP UGT84B1,UGT84B2 O22182,O22183,Q1PF14 U84B1_ARATH,U84B2_ARATH,Q1PF14_ARATH UDP-glycosyltransferase 84B1 (EC 2.4.1.-),UDP-glycosyltransferase 84B2 (EC 2.4.1.-),Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) (UDP-glucoronosyl/UDP-glucosyl transferase family protein) FUNCTION: Possesses low quercetin 7-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}. ARA:AT2G23260-MONOMER;MetaCyc:AT2G23260-MONOMER;,ARA:AT2G23250-MONOMER;MetaCyc:AT2G23250-MONOMER;,ARA:AT2G23210-MONOMER; 2.4.1.- 50714,48717,32494 UDP-glycosyltransferase 84B1 (EC 2.4.1.-),UDP-glycosyltransferase 84B2 (EC 2.4.1.-),Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) (UDP-glucoronosyl/UDP-glucosyl transferase family protein) intracellular membrane-bounded organelle [GO:0043231]; indole-3-acetate beta-glucosyltransferase activity [GO:0047215]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2058563;,locus:2058578;,locus:2058630; AT2G23260,AT2G23250,AT2G23210 UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DZHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os11g0444000 protein (UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed) (UDP-glucosyltransferase BX8) (cDNA clone:001-205-B02, full insert sequence) (cDNA clone:J013043F17, full insert sequence) Q53KZ0 Q53KZ0_ORYSJ LOC_Os11g25730 Os11g0444000 OSNPB_110444000 ENOG411DZHW BHLH122,BHLH130,FBH4 Q9C690,Q66GR3,A0A1P8AZV1 BH122_ARATH,BH130_ARATH,A0A1P8AZV1_ARATH Transcription factor bHLH122 (Basic helix-loop-helix protein 122) (AtbHLH122) (bHLH 122) (Transcription factor EN 70) (bHLH transcription factor bHLH122),Transcription factor bHLH130 (Basic helix-loop-helix protein 130) (AtbHLH130) (bHLH 130) (Transcription factor EN 69) (bHLH transcription factor bHLH130),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 41716,39908,40044 Transcription factor bHLH122 (Basic helix-loop-helix protein 122) (AtbHLH122) (bHLH 122) (Transcription factor EN 70) (bHLH transcription factor bHLH122),Transcription factor bHLH130 (Basic helix-loop-helix protein 130) (AtbHLH130) (bHLH 130) (Transcription factor EN 69) (bHLH transcription factor bHLH130),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; cuticle development [GO:0042335]; photoperiodism, flowering [GO:0048573]; regulation of stomatal movement [GO:0010119]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; photoperiodism, flowering [GO:0048573]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2026037;,locus:2059979; AT1G51140,AT2G42280 Transcription factor NA NA NA NA NA NA NA ENOG411DZHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydroxycinnamoyl-Coenzyme A shikimate quinate hydroxycinnamoyltransferase-like Os10g0330750 protein Q8W5D5 Q8W5D5_ORYSJ Os10g0330750 OSJNAb0008A05.16 OSJNBb0008A05.27 OSNPB_100330750 ENOG411DZHU PPD3 Q9S720 PPD3_ARATH PsbP domain-containing protein 3, chloroplastic (OEC23-like protein 2) MetaCyc:AT1G76450-MONOMER; 27490 PsbP domain-containing protein 3, chloroplastic (OEC23-like protein 2) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2011711; AT1G76450 psbP domain-containing protein 3 Os08g0512500 protein (Thylakoid lumen protein, chloroplast-like) (cDNA clone:J013136N03, full insert sequence) Q6Z8N7 Q6Z8N7_ORYSJ Os08g0512500 OsJ_27910 OSNPB_080512500 P0711H09.12 ENOG411DZHJ Q42290 MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta, mitochondrial (EC 3.4.24.64) (Beta-MPP) FUNCTION: Cleaves presequences (transit peptides) from mitochondrial protein precursors. {ECO:0000250}. ARA:AT3G02090-MONOMER;MetaCyc:AT3G02090-MONOMER; 3.4.24.64 59160 Probable mitochondrial-processing peptidase subunit beta, mitochondrial (EC 3.4.24.64) (Beta-MPP) cell wall [GO:0005618]; chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrial matrix [GO:0005759]; mitochondrial outer membrane [GO:0005741]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; vacuolar membrane [GO:0005774]; metalloendopeptidase activity [GO:0004222]; oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270]; aerobic respiration [GO:0009060]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122]; protein processing [GO:0016485] locus:2078623; AT3G02090 mitochondrial-processing peptidase subunit Mitochondrial processing peptidase beta subunit, mitochondrial, putative, expressed (Os03g0212700 protein),Os03g0212700 protein (Fragment) Q10Q21,A0A0P0VUN0 Q10Q21_ORYSJ,A0A0P0VUN0_ORYSJ LOC_Os03g11410 Os03g0212700 OSNPB_030212700,Os03g0212700 OSNPB_030212700 ENOG411DZHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Glutamate receptor Q69NA4 Q69NA4_ORYSJ Os09g0431200 OsJ_29459 OSJNBa0016E03.36 OSNPB_090431200 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. ENOG411DZHH RMR1 Q9M622,F4JZ38 RMR1_ARATH,F4JZ38_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 1 (AtRMR1) (ReMembR-H2 protein JR700),Receptor homology region transmembrane domain ring H2 motif protein 1 FUNCTION: Involved in the trafficking of vacuolar proteins. Functions probably as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) by binding the C-terminal vacuolar sorting determinant (VSD) of vacuolar-sorted proteins. {ECO:0000269|PubMed:16115960, ECO:0000269|PubMed:17696967, ECO:0000269|Ref.6}. 34429,32134 Receptor homology region, transmembrane domain- and RING domain-containing protein 1 (AtRMR1) (ReMembR-H2 protein JR700),Receptor homology region transmembrane domain ring H2 motif protein 1 endoplasmic reticulum [GO:0005783]; extrinsic component of vacuolar membrane [GO:0000306]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; protein storage vacuole membrane [GO:0032586]; metal ion binding [GO:0046872]; protein self-association [GO:0043621]; intracellular protein transport [GO:0006886],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16115960}. locus:2156872; AT5G66160 PA domain NA NA NA NA NA NA NA ENOG411DZHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os11g0482400 protein (PPR986-12, putative, expressed),Os11g0482400 protein Q2R497,A0A0P0Y2S8 Q2R497_ORYSJ,A0A0P0Y2S8_ORYSJ LOC_Os11g29230 Os11g0482400 OSNPB_110482400,Os11g0482400 OSNPB_110482400 ENOG411DZHN Q8GX81 Q8GX81_ARATH At5g30145 (Craniofacial development-like protein) (Putative bcnt) 26061 At5g30145 (Craniofacial development-like protein) (Putative bcnt) locus:2145890; AT5G30490 Craniofacial development protein Os01g0328500 protein Q0JN48 Q0JN48_ORYSJ Os01g0328500 Os01g0328500 OSNPB_010328500 ENOG411DZHC CYCD6-1,CYCD6:1 Q9ZR04,A0A1P8B774 CCD61_ARATH,A0A1P8B774_ARATH Putative cyclin-D6-1 (G1/S-specific cyclin-D6-1) (CycD6;1),Cyclin D61 34668,34540 Putative cyclin-D6-1 (G1/S-specific cyclin-D6-1) (CycD6;1),Cyclin D61 nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cell cycle [GO:0051726],nucleus [GO:0005634]; regulation of cell cycle [GO:0051726] locus:2125522; AT4G03270 cell division Cyclin-D6-1 (G1/S-specific cyclin-D6-1) (CycD6;1) Q69S43 CCD61_ORYSJ CYCD6-1 Os07g0556000 LOC_Os07g37010 OsJ_24707 OSJNBa0058I18.18 ENOG411DZHF HISN4 Q9SZ30 HIS4_ARATH Imidazole glycerol phosphate synthase hisHF, chloroplastic (IGP synthase) (IGPS) (ImGP synthase) (Protein HISTIDINE BIOSYNTHESIS 4) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] Embryo defective; Gametophyte defective (inferred)-D. Meinke-2007 FUNCTION: IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutamine amidotransferase domain provides the ammonia necessary to the cyclase domain to produce IGP and AICAR from PRFAR. PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9. ARA:AT4G26900-MONOMER;MetaCyc:AT4G26900-MONOMER; Biosynthesis of secondary metabolites (01110),Histidine metabolism (00340),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 2.4.2.-; 4.1.3.- 64192 Imidazole glycerol phosphate synthase hisHF, chloroplastic (IGP synthase) (IGPS) (ImGP synthase) (Protein HISTIDINE BIOSYNTHESIS 4) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; imidazoleglycerol-phosphate synthase activity [GO:0000107]; oxo-acid-lyase activity [GO:0016833]; glutamine metabolic process [GO:0006541]; histidine biosynthetic process [GO:0000105] locus:2116422; AT4G26900 Imidazole glycerol phosphate synthase Imidazole glycerol phosphate synthase hisHF [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] Q10NW0 Q10NW0_ORYSJ LOC_Os03g15120 Os03g0256400 OSNPB_030256400 FUNCTION: IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutamine amidotransferase domain provides the ammonia necessary to the cyclase domain to produce IGP and AICAR from PRFAR. {ECO:0000256|PIRNR:PIRNR036936}. ENOG411DZHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin adaptor complex small chain AP complex subunit sigma Q7XZG1 Q7XZG1_ORYSJ LOC_Os03g59660 Os03g0811300 OSJNBb0033J23.8 OSNPB_030811300 ENOG411DZHE EDL2,EDL1 Q9FLZ8,Q9LF38 EDL2_ARATH,EDL1_ARATH EID1-like F-box protein 2,EID1-like F-box protein 1 28063,33095 EID1-like F-box protein 2,EID1-like F-box protein 1 locus:2175668;,locus:2180907; AT5G39360,AT5G15440 EID1-like F-box protein Circadian clock coupling factor, putative, expressed (Expressed protein (Alternative splicing)) (Os03g0427000 protein) (cDNA clone:J023030O19, full insert sequence),Os07g0598200 protein Q75I58,Q6ZJE5 Q75I58_ORYSJ,Q6ZJE5_ORYSJ OSJNBa0083F15.24 LOC_Os03g31310 Os03g0427000 OSNPB_030427000,Os07g0598200 Os07g0598200 OJ1579_C03.19 OsJ_24992 OSNPB_070598200 ENOG411DZH8 Q9FMB1,A0A1P8BCR2 Q9FMB1_ARATH,A0A1P8BCR2_ARATH FrnE protein-like (Putative frnE protein) (Thioredoxin superfamily protein),Thioredoxin superfamily protein 24161,26364 FrnE protein-like (Putative frnE protein) (Thioredoxin superfamily protein),Thioredoxin superfamily protein cytosol [GO:0005829]; protein disulfide oxidoreductase activity [GO:0015035]; defense response to fungus, incompatible interaction [GO:0009817],protein disulfide oxidoreductase activity [GO:0015035] locus:2152307; AT5G38900 DSBA-like thioredoxin domain Os03g0598900 protein (Putative polyketide synthase) Q8H8S2 Q8H8S2_ORYSJ Os03g0598900 OJ1523_A02.4 OsJ_11651 OSNPB_030598900 ENOG411DZH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Acidic class III chitinase OsChib3a (Chitinase) (EC 3.2.1.14) (Os01g0660200 protein) (Putative chitinase) (cDNA clone:J023143D03, full insert sequence),Os01g0691000 protein O22080,Q0JK83 O22080_ORYSJ,Q0JK83_ORYSJ Os01g0660200 OSNPB_010660200 P0445H04.12 P0684E06.23,Os01g0691000 Os01g0691000 OSNPB_010691000 ENOG411DZH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity) Expansin-A14 (Alpha-expansin-14) (OsEXP14) (OsEXPA14) (OsaEXPa1.11),Expansin-A22 (Alpha-expansin-22) (OsEXP22) (OsEXPA22) (OsaEXPa1.9),Expansin-A23 (Alpha-expansin-23) (OsEXP23) (OsEXPA23) (OsaEXPa1.12),Expansin-A24 (Alpha-expansin-24) (OsEXP24) (OsEXPA24) (OsaEXPa1.10),Os02g0268050 protein (Os02g0268400 protein) (Fragment),Os02g0268600 protein (Fragment),Os02g0267700 protein (Fragment) Q4PR51,Q4PR44,Q4PR43,Q4PR42,A0A0P0VHE0,A0A0P0VHM1,A0A0P0VHC9 EXP14_ORYSJ,EXP22_ORYSJ,EXP23_ORYSJ,EXP24_ORYSJ,A0A0P0VHE0_ORYSJ,A0A0P0VHM1_ORYSJ,A0A0P0VHC9_ORYSJ EXPA14 EXP14 Os02g0267700 LOC_Os02g16780 P0693E08.10,EXPA22 EXP22 Os02g0268600 LOC_Os02g16850 P0693E08.19,EXPA23.1 EXP23.1 Os02g0268000 LOC_Os02g16809 P0693E08.13; EXPA23.2 EXP23.2 Os02g0268000 LOC_Os02g16839 P0693E08.17,EXPA24 EXP24 Os02g0267900 LOC_Os02g16800 OsJ_06187 P0693E08.12,Os02g0268050 Os02g0268400 OSNPB_020268050 OSNPB_020268400,Os02g0268600 OSNPB_020268600,Os02g0267700 OSNPB_020267700 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DZH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase Os11g0572500 protein,Os11g0572500 protein (Fragment) C7J964,A0A0N7KT38 C7J964_ORYSJ,A0A0N7KT38_ORYSJ Os11g0572500 OSNPB_110572500 ENOG411DZH1 F4HZS8 F4HZS8_ARATH Sporulation-specific protein 228954 Sporulation-specific protein vacuole [GO:0005773] locus:2030541; AT1G22060 NA NA NA NA NA NA NA NA ENOG411DZH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase Probable mixed-linked glucan synthase 7 (EC 2.4.1.-) (1,3;1,4-beta-D-glucan synthase 7) (Cellulose synthase-like protein F7) (OsCslF7),Os12g0477200 protein Q94GM9,A0A0P0YA68 CSLF7_ORYSJ,A0A0P0YA68_ORYSJ CSLF7 Os10g0343400 LOC_Os10g20260 OSJNBb0052C09.2,Os12g0477200 OSNPB_120477200 FUNCTION: May catalyze both beta-1,3 and beta-1,4 glycosidic linkage on beta-D-glucan. Essential for (1,3;1,4)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats, wheat, rice and barley. They can account for up to 70% by weight of the wall (By similarity). {ECO:0000250}. ENOG411DZH7 C7A10.750 O23220,Q9ASW5,A0A1P8B251 O23220_ARATH,Q9ASW5_ARATH,A0A1P8B251_ARATH Alpha/beta-Hydrolases superfamily protein (At4g36610) (Uncharacterized protein AT4g36610) (Uncharacterized protein C7A10.750),Alpha/beta-Hydrolases superfamily protein (At2g18360/T30D6.13) (Expressed protein),Alpha/beta-Hydrolases superfamily protein 35622,35527,30841 Alpha/beta-Hydrolases superfamily protein (At4g36610) (Uncharacterized protein AT4g36610) (Uncharacterized protein C7A10.750),Alpha/beta-Hydrolases superfamily protein (At2g18360/T30D6.13) (Expressed protein),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2115435;,locus:2062126; AT4G36610,AT2G18360 hydrolase alpha beta fold family NA NA NA NA NA NA NA ENOG411DZH4 TRA2 Q9LYR4 Q9LYR4_ARATH Aldolase-type TIM barrel family protein (Putative transaldolase) (Transaldolase-like protein) ARA:AT5G13420-MONOMER; 47699 Aldolase-type TIM barrel family protein (Putative transaldolase) (Transaldolase-like protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid [GO:0009536]; sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity [GO:0004801]; carbohydrate metabolic process [GO:0005975]; lignin biosynthetic process [GO:0009809]; pentose-phosphate shunt [GO:0006098]; response to cadmium ion [GO:0046686]; shikimate biosynthetic process [GO:0033587] locus:2181665; AT5G13420 Transaldolase Os01g0926300 protein (Putative transaldolase) (cDNA clone:001-203-A10, full insert sequence) (cDNA clone:J023139A20, full insert sequence) Q5JK10 Q5JK10_ORYSJ Os01g0926300 OsJ_04614 OSJNBa0093F16.14 OSNPB_010926300 ENOG411DZH5 Q0IGM5 Q0IGM5_ARATH At1g56080 (Interactor of constitutive active ROPs protein) 34597 At1g56080 (Interactor of constitutive active ROPs protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2205230; AT1G56080 NA Os01g0768300 protein A0A0P0V8N0 A0A0P0V8N0_ORYSJ Os01g0768300 OSNPB_010768300 ENOG411E0R9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENDO3c Os05g0567500 protein (cDNA clone:J023075P20, full insert sequence) (cDNA clone:J033003A01, full insert sequence) Q688W2 Q688W2_ORYSJ Os05g0567500 OJ1781_H11.15 OsJ_19580 OSNPB_050567500 ENOG411E0R8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os09g0360900 protein (Fragment) A0A0N7KQN2 A0A0N7KQN2_ORYSJ Os09g0360900 OSNPB_090360900 ENOG411E0R1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os08g0130300 protein A0A0P0XBC4 A0A0P0XBC4_ORYSJ Os08g0130300 OSNPB_080130300 ENOG411E0R0 NIFU2 Q93W20 NIFU2_ARATH NifU-like protein 2, chloroplastic (AtCNfu2) (AtCnfU-V) DISRUPTION PHENOTYPE: Plants are dwarf with faint pale-green leaves, decreased amount of ferredoxin and impaired photosystem I accumulation. {ECO:0000269|PubMed:15031412}. FUNCTION: Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins. Required for biogenesis of ferredoxin, a major photosynthetic electron carrier containing [2Fe-2S] cluster. Required for the assembly of photosystem I complex. {ECO:0000269|PubMed:15031412, ECO:0000269|PubMed:15361144}. 25620 NifU-like protein 2, chloroplastic (AtCNfu2) (AtCnfU-V) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 2 iron, 2 sulfur cluster binding [GO:0051537]; iron ion binding [GO:0005506]; structural molecule activity [GO:0005198]; chloroplast organization [GO:0009658]; iron-sulfur cluster assembly [GO:0016226] TISSUE SPECIFICITY: Predominantly expressed in leaves and floral stalks. Ubiquitous (at protein level). {ECO:0000269|PubMed:12553879, ECO:0000269|PubMed:15031412}. locus:2158849; AT5G49940 NIFU-like protein 2 NifU-like protein 1, chloroplastic (OsNifu1),Nitrogen fixation protein, putative, expressed (Os11g0181500 protein) (cDNA clone:006-306-B05, full insert sequence) (cDNA clone:J013108O03, full insert sequence) Q84LK7,Q0IU70 NIFU1_ORYSJ,Q0IU70_ORYSJ NIFU1 Os12g0176200 LOC_Os12g07700,Os11g0181500 LOC_Os11g07916 Os11g0181500 OsJ_33192 OSNPB_110181500 FUNCTION: Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins. {ECO:0000250}. ENOG411E0R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family (UPF0121) Os01g0641700 protein (RNA polymerase sigma factor-like) (cDNA clone:J033125A17, full insert sequence) Q5VNW6 Q5VNW6_ORYSJ Os01g0641700 Os01g0641700 OsJ_02786 OSNPB_010641700 P0039G05.21 P0510C12.6 ENOG411E0R7 POT3 Q9FE38 POT3_ARATH Potassium transporter 3 (AtKT3) (AtKUP4) (AtPOT3) (Tiny root hair 1 protein) DISRUPTION PHENOTYPE: Loss-of-function mutation results in the arrest of root hair growth. {ECO:0000269|PubMed:11158535}. Altered root hair development-A. Grabov-2001 FUNCTION: High-affinity potassium transporter required for tip growth of root hairs. {ECO:0000269|PubMed:11158535}. 86843 Potassium transporter 3 (AtKT3) (AtKUP4) (AtPOT3) (Tiny root hair 1 protein) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; potassium ion transmembrane transporter activity [GO:0015079]; cell tip growth [GO:0009932] DEVELOPMENTAL STAGE: Highly expressed in roots in the early stage of seedlings growth. TISSUE SPECIFICITY: Detected at very low levels in roots, stems, leaves and flowers of mature plants. {ECO:0000269|PubMed:9477571}. locus:2128399; AT4G23640 Potassium transporter NA NA NA NA NA NA NA ENOG411E0RI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os02g0284500 protein (Fragment) A0A0P0VHN3 A0A0P0VHN3_ORYSJ Os02g0284500 OSNPB_020284500 ENOG411E0RH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os05g0414200 protein,OSJNBb0060M15.7 protein (Os04g0112100 protein) (cDNA, clone: J090098F18, full insert sequence),Os03g0357600 protein Q0DI60,Q7XQC4,Q10L61 Q0DI60_ORYSJ,Q7XQC4_ORYSJ,Q10L61_ORYSJ Os05g0414200 Os05g0414200 OsJ_18546 OSNPB_050414200,Os04g0112100 Os04g0112100 OsJ_13550 OSJNBb0060M15.7 OSNPB_040112100,Os03g0357600 LOC_Os03g24310 OsJ_10905 OSNPB_030357600 ENOG411E0RN P16128,A0A1P8B5S5,A0A1P8B5S4,A0A1P8B5T3,A0A1P8B5R8,F4JRJ9 Y4849_ARATH,A0A1P8B5S5_ARATH,A0A1P8B5S4_ARATH,A0A1P8B5T3_ARATH,A0A1P8B5R8_ARATH,F4JRJ9_ARATH Uncharacterized protein At4g18490,Uncharacterized protein 83702,85111,88942,88786,88928,83716 Uncharacterized protein At4g18490,Uncharacterized protein locus:2124558; AT4G18490 NA Os01g0755100 protein (Fragment) A0A0P0V8F7 A0A0P0V8F7_ORYSJ Os01g0755100 OSNPB_010755100 ENOG411E0RA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha-L-arabinofuranosidase C-terminus Os07g0686900 protein,Os03g0320100 protein (Fragment) C7J5E2,Q0DSC3 C7J5E2_ORYSJ,Q0DSC3_ORYSJ Os07g0686900 Os07g0686900 OSNPB_070686900,Os03g0320100 Os03g0320100 OSNPB_030320100 ENOG411E0RC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0183500 protein (Fragment) Q0JQ37 Q0JQ37_ORYSJ Os01g0183500 Os01g0183500 OSNPB_010183500 ENOG411E0RB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase dimerisation domain IAA-amino acid hydrolase ILR1-like 2 (EC 3.5.1.-) Q5N8F2 ILL2_ORYSJ ILL2 Os01g0706900 LOC_Os01g51060 P0510F09.6 P0692C11.28 FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA). {ECO:0000250}. ENOG411E0RE F22G10.8 Q9C8L9 Q9C8L9_ARATH At1g53640/F22G10.8 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At1g53645) (Uncharacterized protein F22G10.8) 56919 At1g53640/F22G10.8 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At1g53645) (Uncharacterized protein F22G10.8) mRNA binding [GO:0003729] locus:505006183; AT1G53645 NA Hydroxyproline-rich glycoprotein-like (Os06g0664400 protein) Q655Y7 Q655Y7_ORYSJ Os06g0664400 Os06g0664400 OSNPB_060664400 P0473H04.6 ENOG411E0RD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q8S5Y4 Q8S5Y4_ORYSJ OJ1175C11.1 Os03g0234500 prx37 LOC_Os03g13180 OsJ_10053 OSNPB_030234500 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411E0RF Q8RY99 RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial (Recombinase A homolog 2) FUNCTION: Involved in recombination ability and DNA strand transfer activity. {ECO:0000250}. 42954 DNA repair protein recA homolog 2, mitochondrial (Recombinase A homolog 2) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; DNA recombinase assembly [GO:0000730]; mitochondrial genome maintenance [GO:0000002]; mitotic recombination [GO:0006312]; response to heat [GO:0009408]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148] locus:2100038; AT3G10140 DNA repair protein recA homolog 2 mitochondrial-like Os01g0945001 protein A0A0P0VCR4 A0A0P0VCR4_ORYSJ Os01g0945001 OSNPB_010945001 ENOG411E0RX SCPL7,scpl1,scpl3 Q9SQX6,A0A1P8BEP6,A0A1P8AWR8,A0A1P8AWR4,F4J3S3 SCP7_ARATH,A0A1P8BEP6_ARATH,A0A1P8AWR8_ARATH,A0A1P8AWR4_ARATH,F4J3S3_ARATH Serine carboxypeptidase-like 7 (EC 3.4.16.-),Serine carboxypeptidase-like 1,Serine carboxypeptidase-like 3,Serine carboxypeptidase-like 7 FUNCTION: Probable carboxypeptidase. {ECO:0000250}. ARA:AT3G10450-MONOMER; R-ATH-6798695; 3.4.16.- 49565,38759,36351,39083,45029 Serine carboxypeptidase-like 7 (EC 3.4.16.-),Serine carboxypeptidase-like 1,Serine carboxypeptidase-like 3,Serine carboxypeptidase-like 7 extracellular region [GO:0005576]; carboxypeptidase activity [GO:0004180]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; secondary metabolic process [GO:0019748],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}. locus:2075755; AT3G10450 Serine Carboxypeptidase Os11g0461000 protein,Os11g0460800 protein (Serine carboxypeptidase family protein, expressed) (cDNA clone:J013092B20, full insert sequence) Q0ISU1,Q0ISU2,A0A0P0Y2W6,A0A0P0Y2H0 Q0ISU1_ORYSJ,Q0ISU2_ORYSJ,A0A0P0Y2W6_ORYSJ,A0A0P0Y2H0_ORYSJ Os11g0461000 Os11g0461000 OSNPB_110461000,Os11g0460800 LOC_Os11g27264 Os11g0460800 OSNPB_110460800,Os11g0461000 OSNPB_110461000 ENOG411E0RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0537500 protein Q0D5T4 Q0D5T4_ORYSJ Os07g0537500 Os07g0537500 OSNPB_070537500 ENOG411E0RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor MADS-box transcription factor 56 (FDRMADS8) (OsMADS56) (RMADS214) P0C5B2 MAD56_ORYSJ MADS56 Os10g0536100 LOC_Os10g39130 OsJ_32282 OSJNBb0060I05.3 FUNCTION: Probable transcription factor. ENOG411E0RU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhomboid family Rhomboid-like protein (EC 3.4.21.-) Q651M0,Q6ZFV7 Q651M0_ORYSJ,Q6ZFV7_ORYSJ Os09g0525900 OJ1439_F07.6 OsJ_30065 OSJNBa0047P18.34 OSNPB_090525900,Os08g0546700 OJ1323_A06.27 OsJ_28172 OSNPB_080546700 ENOG411E0RT Q0V7S1 Q0V7S1_ARATH Actin protein 2/3 complex subunit-like protein (At2g28130) 51919 Actin protein 2/3 complex subunit-like protein (At2g28130) locus:2046233; AT2G28130 NA Os01g0241100 protein (cDNA, clone: J090050L06, full insert sequence) Q5NA57 Q5NA57_ORYSJ Os01g0241100 B1066G12.1 OsJ_01063 OSJNBa0010K01.26 OSNPB_010241100 ENOG411E0RW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os12g0114400 protein (Fragment),Os11g0114800 protein (Pentatricopeptide, putative),Os01g0312700 protein Q0IQL3,Q2RBE0,A0A0P0V1K3 Q0IQL3_ORYSJ,Q2RBE0_ORYSJ,A0A0P0V1K3_ORYSJ Os12g0114400 Os12g0114400 OSNPB_120114400,Os11g0114800 LOC_Os11g02310 OsJ_32710 OSNPB_110114800,Os01g0312700 OSNPB_010312700 ENOG411DS69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase Os06g0109500 protein A3B7M9 A3B7M9_ORYSJ Os06g0109500 OsJ_19855 OSNPB_060109500 ENOG411DS68 TFB4 Q8LF41 TFB4_ARATH RNA polymerase II transcription factor B subunit 4 (General transcription and DNA repair factor IIH subunit TFB4) (AtTFB4) (TFIIH subunit TFB4) FUNCTION: Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. {ECO:0000250|UniProtKB:Q13889}. R-ATH-113418;R-ATH-5696395;R-ATH-5696400;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 33068 RNA polymerase II transcription factor B subunit 4 (General transcription and DNA repair factor IIH subunit TFB4) (AtTFB4) (TFIIH subunit TFB4) core TFIIH complex [GO:0000439]; holo TFIIH complex [GO:0005675]; damaged DNA binding [GO:0003684]; metal ion binding [GO:0046872]; translation factor activity, RNA binding [GO:0008135]; nucleotide-excision repair [GO:0006289]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; transcription, DNA-templated [GO:0006351] locus:2014124; AT1G18340 Transcription factor Os02g0125800 protein (Putative TFIIH basal transcription factor complex p34 subunit) (cDNA clone:J033106M17, full insert sequence) Q6Z2N2 Q6Z2N2_ORYSJ Os02g0125800 OSNPB_020125800 P0482F12.7 ENOG411DS61 F4K3A9 F4K3A9_ARATH HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase 72892 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 5'-nucleotidase activity [GO:0008253]; metal ion binding [GO:0046872] locus:2154364; AT5G48960 cytosolic purine 5'-nucleotidase-like 5'-nucleotidase, cytosolic II-like (Os01g0250900 protein) (cDNA clone:J013002D15, full insert sequence) Q5NBD6 Q5NBD6_ORYSJ Os01g0250900 OSNPB_010250900 P0434D08.18 ENOG411DS62 CKB4,CKB3 O80507,O81275,A0A1P8AXL7,B3H4P8,A0A1I9LLK5 CSK2E_ARATH,CSK2D_ARATH,A0A1P8AXL7_ARATH,B3H4P8_ARATH,A0A1I9LLK5_ARATH Putative casein kinase II subunit beta-4 (CK II beta-4),Casein kinase II subunit beta-3 (CK II beta-3),Casein kinase II subunit beta (CK II beta) FUNCTION: Plays a complex role in regulating the basal catalytic activity of the alpha subunit. The tetrameric holoenzyme CK2, composed of two alpha and two beta subunits, phosphorylates the transcription factor PIF1 after an exposure to light, resulting in a proteasome-dependent degradation of PIF1 and promotion of photomorphogenesis (PubMed:21330376). CK2 phosphorylates translation initiation factors. May participate in the regulation of the initiation of translation (PubMed:19509278). {ECO:0000269|PubMed:19509278, ECO:0000269|PubMed:21330376}.,FUNCTION: Plays a complex role in regulating the basal catalytic activity of the alpha subunit. The tetrameric holoenzyme CK2, composed of two alpha and two beta subunits, phosphorylates the transcription factor PIF1 after an exposure to light, resulting in a proteasome-dependent degradation of PIF1 and promotion of photomorphogenesis (PubMed:21330376). CK2 phosphorylates translation initiation factors. May participate in the regulation of the initiation of translation (PubMed:19509278). Stimulates the binding of CCA1 to promoters (Probable). {ECO:0000269|PubMed:19509278, ECO:0000269|PubMed:21330376, ECO:0000305|PubMed:9724822}.,FUNCTION: Plays a complex role in regulating the basal catalytic activity of the alpha subunit. {ECO:0000256|RuleBase:RU361268}. R-ATH-2514853;R-ATH-6798695;R-ATH-6804756; 31631,30798,28083,30742,26651 Putative casein kinase II subunit beta-4 (CK II beta-4),Casein kinase II subunit beta-3 (CK II beta-3),Casein kinase II subunit beta (CK II beta) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein kinase CK2 complex [GO:0005956]; protein kinase regulator activity [GO:0019887]; protein serine/threonine kinase activity [GO:0004674]; circadian rhythm [GO:0007623]; photoperiodism, flowering [GO:0048573]; positive regulation of circadian rhythm [GO:0042753],cytosol [GO:0005829]; nucleus [GO:0005634]; protein kinase CK2 complex [GO:0005956]; protein kinase regulator activity [GO:0019887]; transcription factor binding [GO:0008134]; regulation of circadian rhythm [GO:0042752],protein kinase CK2 complex [GO:0005956]; kinase activity [GO:0016301]; protein kinase regulator activity [GO:0019887] locus:2042431;,locus:2081937; AT2G44680,AT3G60250 casein kinase II subunit Casein kinase II subunit beta (CK II beta) Q84RS4,Q336R6 Q84RS4_ORYSJ,Q336R6_ORYSJ OJ1058_B11.121 Os07g0495100 OSNPB_070495100,LOC_Os10g41520 Os10g0564900 OSNPB_100564900 FUNCTION: Plays a complex role in regulating the basal catalytic activity of the alpha subunit. {ECO:0000256|RuleBase:RU361268}. ENOG411DS65 TRM10 Q9FGI9 Q9FGI9_ARATH At5g47680 (Similarity to unknown protein) (Uncharacterized protein At5g47680) (tRNA (Guanine(9)-N1)-methyltransferase-like protein) 39506 At5g47680 (Similarity to unknown protein) (Uncharacterized protein At5g47680) (tRNA (Guanine(9)-N1)-methyltransferase-like protein) methyltransferase activity [GO:0008168]; 1-methylguanosine metabolic process [GO:0080179]; tRNA modification [GO:0006400] locus:2169043; AT5G47680 tRNA (Guanine-1)-methyltransferase Os02g0725600 protein (Fragment) Q0DXY9 Q0DXY9_ORYSJ Os02g0725600 Os02g0725600 OSNPB_020725600 ENOG411DS67 DJ1D Q9M8R4 DJ1D_ARATH Protein DJ-1 homolog D (AtDJ1D) (Lactoylglutathione lyase DJ1D) (EC 4.4.1.5) FUNCTION: Possesses glyoxalase I activity. Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. May be involved in oxidative stress response. {ECO:0000269|PubMed:23651081}. 4.4.1.5 41646 Protein DJ-1 homolog D (AtDJ1D) (Lactoylglutathione lyase DJ1D) (EC 4.4.1.5) glyoxalase III activity [GO:0019172]; lactoylglutathione lyase activity [GO:0004462] locus:2075532; AT3G02720 DJ-1/PfpI family OSJNBb0004A17.4 protein (Os04g0671700 protein) (cDNA clone:J023118M23, full insert sequence) Q7XPI5 Q7XPI5_ORYSJ OSJNBb0004A17.4 Os04g0671700 OsJ_16581 OSNPB_040671700 ENOG411DS6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase Phospholipid-transporting ATPase (EC 3.6.3.1) (Fragment) A0A0P0VX09,A0A0P0VXV2 A0A0P0VX09_ORYSJ,A0A0P0VXV2_ORYSJ Os03g0326200 OSNPB_030326200 ENOG411DS6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FoP_duplication Os06g0256200 protein (Putative DIP2 protein) (cDNA clone:001-043-F10, full insert sequence),Os06g0256200 protein Q652G7,A0A0P0WV97 Q652G7_ORYSJ,A0A0P0WV97_ORYSJ P0624H09.7-1 Os06g0256200 OsJ_20860 OSNPB_060256200,Os06g0256200 OSNPB_060256200 ENOG411DS6P NDC1 Q8GXR9 NDC1_ARATH Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (EC 1.6.5.9) (Alternative NADH dehydrogenase NDC1) (Demethylphylloquinone reductase NDC1) (EC 1.6.5.12) (NADH:ubiquinone reductase (non-electrogenic) NDC1) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:21844348, PubMed:25018761). Increased photosensitivity to high light (PubMed:26023160). {ECO:0000269|PubMed:21844348, ECO:0000269|PubMed:25018761, ECO:0000269|PubMed:26023160}. FUNCTION: Bifunctional oxidoreductase ables to act both on prenyl naphthoquinones and on prenyl benzoquinones (PubMed:21844348, PubMed:26023160). May serve a respiratory function (PubMed:12972666). Involved in an electron flow toward the plastoglobule plastoquinone pool (PubMed:21844348, PubMed:25018761). Required for plastochromanol-8 accumulation and for phylloquinone (vitamin K1) production (PubMed:21844348, PubMed:25018761). Probably not directly involved in cyclic or chlororespiratory electron flows under standard growth conditions, but participates in the redox metabolism of plastoquinone-9 and the tocophrol recycling-intermediate alpha-tocopherol quinone (PubMed:21844348, PubMed:25018761). Catalyzes the penultimate step in the biosynthesis of vitamin K1 (PubMed:26023160). {ECO:0000269|PubMed:12972666, ECO:0000269|PubMed:21844348, ECO:0000269|PubMed:25018761, ECO:0000269|PubMed:26023160}. ARA:AT5G08740-MONOMER;MetaCyc:MONOMER-19499; 1.6.5.9; 1.6.5.12 56916 Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (EC 1.6.5.9) (Alternative NADH dehydrogenase NDC1) (Demethylphylloquinone reductase NDC1) (EC 1.6.5.12) (NADH:ubiquinone reductase (non-electrogenic) NDC1) chloroplast [GO:0009507]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastoglobule [GO:0010287]; oxidoreductase activity [GO:0016491]; aerobic electron transport chain [GO:0019646]; cellular response to light stimulus [GO:0071482]; oxidation-reduction process [GO:0055114] TISSUE SPECIFICITY: Flowers, roots, leaves and stems. {ECO:0000269|PubMed:12972666}. AT5G08740 NADH dehydrogenase Os06g0214900 protein (Putative NADH dehydrogenase) Q69Y16 Q69Y16_ORYSJ Os06g0214900 OSNPB_060214900 P0537F07.17 P0701E03.56 ENOG411DS6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0788800 protein (Putative RING zinc finger protein) (Zinc finger family protein, putative, expressed) (cDNA clone:J023106F04, full insert sequence) Q6F3A0 Q6F3A0_ORYSJ LOC_Os03g57500 Os03g0788800 OSJNBb0024J04.25 OSNPB_030788800 ENOG411DS6I DAW1 Q0WQ40,F4JN30 Q0WQ40_ARATH,F4JN30_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At4g35560),Transducin/WD40 repeat-like superfamily protein 116359,116487 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At4g35560),Transducin/WD40 repeat-like superfamily protein cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; syntaxin binding [GO:0019905]; pollen sperm cell differentiation [GO:0048235]; regulation of exocytosis [GO:0017157] locus:2127983; AT4G35560 WD40 Os04g0564700 protein (Fragment),Os04g0564700 protein A0A0P0WDR8,A0A0N7KJI5 A0A0P0WDR8_ORYSJ,A0A0N7KJI5_ORYSJ Os04g0564700 OSNPB_040564700 ENOG411DS6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0773300 protein (Putative receptor-like protein kinase) (Wound and phytochrome signaling involved receptor like kinase, putative, expressed) (cDNA clone:J023086E17, full insert sequence),Os03g0773300 protein (Fragment) Q7XZX3,A0A0P0W3K7 Q7XZX3_ORYSJ,A0A0P0W3K7_ORYSJ Os03g0773300 LOC_Os03g56250 Os03g0773300 OsJ_12759 OSJNBb0094O03.13 OSNPB_030773300,Os03g0773300 OSNPB_030773300 ENOG411DS6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytokinin dehydrogenase 1 FAD and cytokinin binding Cytokinin dehydrogenase 2 (EC 1.5.99.12) (Cytokinin oxidase 2) (OsCKX2) (QTL grain number 1a) (Gn1a) Q4ADV8 CKX2_ORYSJ CKX2 Os01g0197700 LOC_Os01g10110 B1046G12.8 OsJ_00744 P0419B01.20 DISRUPTION PHENOTYPE: Enhanced grain production and higher cytokinin levels in inflorescence meristems. {ECO:0000269|PubMed:15976269}. FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. Modulates the number of reproductive organs by regulating the cytokinin accumulation in inflorescence meristems. Major QTL involved in grain yield. {ECO:0000269|PubMed:15976269}. ENOG411DS6J T23J7.130 Q9LXG7,Q9STT3,F4J5Z7 Q9LXG7_ARATH,Q9STT3_ARATH,F4J5Z7_ARATH Aldose 1-epimerase family protein (Galactose mutarotase-like superfamily protein) (Putative aldose 1-epimerase-like protein),Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase),Galactose mutarotase-like superfamily protein FUNCTION: Converts alpha-aldose to the beta-anomer. {ECO:0000256|PIRNR:PIRNR005096}. PATHWAY: Carbohydrate metabolism; hexose metabolism. {ECO:0000256|PIRNR:PIRNR005096}. ARA:AT5G15140-MONOMER;,ARA:AT3G47800-MONOMER; 5.1.3.3 54520,39715,47740 Aldose 1-epimerase family protein (Galactose mutarotase-like superfamily protein) (Putative aldose 1-epimerase-like protein),Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase),Galactose mutarotase-like superfamily protein aldose 1-epimerase activity [GO:0004034]; carbohydrate binding [GO:0030246]; galactose catabolic process via UDP-galactose [GO:0033499]; glucose metabolic process [GO:0006006] locus:2150886;,locus:2100352;,locus:2100257; AT5G15140,AT3G47800,AT3G01260 Converts alpha-aldose to the beta-anomer. It is active on D-glucose L-arabinose D-xylose D-galactose maltose and lactose (By similarity) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase) Q75M64,A0A0P0WB27 Q75M64_ORYSJ,A0A0P0WB27_ORYSJ LOC_Os03g26430 Os03g0381000 OsJ_11063 OSJNBa0011H24.21 OSNPB_030381000,Os04g0458300 OSNPB_040458300 FUNCTION: Converts alpha-aldose to the beta-anomer. {ECO:0000256|PIRNR:PIRNR005096}. ENOG411DS6N PCMP-H17,MLN1.16 Q9FFG8,A0A1P8BHN8 PP417_ARATH,A0A1P8BHN8_ARATH Pentatricopeptide repeat-containing protein At5g44230,Pentatricopeptide repeat (PPR) superfamily protein 73670,62935 Pentatricopeptide repeat-containing protein At5g44230,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451],zinc ion binding [GO:0008270] locus:2167593; AT5G44230 Pentatricopeptide repeat-containing protein Os06g0694300 protein A0A0P0X098 A0A0P0X098_ORYSJ Os06g0694300 OSNPB_060694300 ENOG411DS6C Q9LIJ8,Q8L7H9,F4J2T8 Q9LIJ8_ARATH,Q8L7H9_ARATH,F4J2T8_ARATH At3g22970,Uncharacterized protein At4g14620,Uncharacterized protein 40902,38707,28814 At3g22970,Uncharacterized protein At4g14620,Uncharacterized protein locus:2084593;,locus:2130005; AT3G22970,AT4G14620 Plant-specific domain TIGR01615 family protein Os03g0796600 protein (cDNA clone:001-114-G01, full insert sequence),Os07g0181500 protein (cDNA clone:J023093E18, full insert sequence) Q10C31,B7EKS3 Q10C31_ORYSJ,B7EKS3_ORYSJ LOC_Os03g58230 Os03g0796600 OSNPB_030796600,Os07g0181500 Os07g0181500 OSNPB_070181500 ENOG411DS6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411DS6D Q9C9Z1 ZTP50_ARATH Putative zinc transporter At3g08650 FUNCTION: May transport zinc. {ECO:0000305}. 64744 Putative zinc transporter At3g08650 integral component of membrane [GO:0016021]; membrane [GO:0016020]; zinc ion transmembrane transporter activity [GO:0005385]; zinc II ion transmembrane transport [GO:0071577] locus:2077853; AT3G08650 transporter Os05g0316100 protein (cDNA clone:J013024K20, full insert sequence) (cDNA clone:J013088L23, full insert sequence) Q5W6X5 Q5W6X5_ORYSJ Os05g0316100 Os05g0316100 OsJ_18031 OSJNBa0065C11.1 OSNPB_050316100 ENOG411DS6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA adenosine 3'-phospho 5'-phosphosulfate transporter NA NA NA NA NA NA NA ENOG411EFAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BowB Bowman-Birk type bran trypsin inhibitor (OSE727A) (Protein RBBI3-3) (RBTI),Bowman-Birk type proteinase inhibitor A (Os01g0124200 protein) (cDNA clone:001-035-D09, full insert sequence) (cDNA clone:006-202-G03, full insert sequence) (cDNA clone:J013096H09, full insert sequence),Os01g0124650 protein (cDNA clone:001-125-E08, full insert sequence) (cDNA clone:J023130E04, full insert sequence),Os01g0124000 protein (Putative Bowman Birk trypsin inhibitor) (cDNA clone:J013042O18, full insert sequence),Os01g0124100 protein (cDNA clone:001-102-D05, full insert sequence) Q0JR25,A5HEI2,B7E9D7,Q5ZCB1,Q0JR27 IBBR_ORYSJ,A5HEI2_ORYSJ,B7E9D7_ORYSJ,Q5ZCB1_ORYSJ,Q0JR27_ORYSJ RBBI3.3 Os01g0124401 Os01g0124400 LOC_Os01g03360 P0037C04.19 P0044F08.1,pinA Os01g0124200 OSNPB_010124200,Os01g0124650 OSNPB_010124650,Os01g0124000 OsJ_00195 OSNPB_010124000 P0037C04.14 P0445D12.38,Os01g0124100 Os01g0124100 OSNPB_010124100 ENOG411EFAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EFAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0279832 protein (Fragment) A0A0P0VWQ4 A0A0P0VWQ4_ORYSJ Os03g0279832 OSNPB_030279832 ENOG411EFAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os01g0910000 protein Q5N884 Q5N884_ORYSJ Os01g0910000 OsJ_04492 OSNPB_010910000 P0456E05.29 ENOG411EFAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI NA NA NA NA NA NA NA ENOG411EFAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion transport protein NA NA NA NA NA NA NA ENOG411DZSJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DUAW Q9SGI3,A0A1I9LM38 Q9SGI3_ARATH,A0A1I9LM38_ARATH At3g1920/F28J7.25 (DHBP synthase RibB-like alpha/beta domain-containing protein) (F28J7.25 protein),DHBP synthase RibB-like alpha/beta domain-containing protein 33539,36567 At3g1920/F28J7.25 (DHBP synthase RibB-like alpha/beta domain-containing protein) (F28J7.25 protein),DHBP synthase RibB-like alpha/beta domain-containing protein double-stranded RNA binding [GO:0003725] locus:2078668; AT3G01920 Telomere recombination Os08g0531300 protein (Translation factor-like),Os08g0531300 protein (Fragment) Q6YZF2,A0A0P0XI70 Q6YZF2_ORYSJ,A0A0P0XI70_ORYSJ P0702E04.1-1 OJ1789_C07.23-1 Os08g0531300 OsJ_28055 OSNPB_080531300,Os08g0531300 OSNPB_080531300 ENOG411DUAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os12g0577100 protein (RNA recognition motif family protein, expressed) Q2QN68 Q2QN68_ORYSJ LOC_Os12g38800 Os12g0577100 OSNPB_120577100 ENOG411DUAZ IPP1,IPP2 Q38929,Q42553,A0A1I9LM15 IDI1_ARATH,IDI2_ARATH,A0A1I9LM15_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic (EC 5.3.3.2) (Isopentenyl pyrophosphate isomerase I) (IPP isomerase I),Isopentenyl-diphosphate Delta-isomerase II, chloroplastic (EC 5.3.3.2) (Isopentenyl pyrophosphate isomerase II) (IPP isomerase II),Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 FUNCTION: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). {ECO:0000250}. PATHWAY: Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from isopentenyl diphosphate: step 1/1.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT5G16440-MONOMER;MetaCyc:AT5G16440-MONOMER;,ARA:AT3G02780-MONOMER;MetaCyc:AT3G02780-MONOMER; R-ATH-191273; 5.3.3.2; 5.3.3.2 33214,32607,27551 Isopentenyl-diphosphate Delta-isomerase I, chloroplastic (EC 5.3.3.2) (Isopentenyl pyrophosphate isomerase I) (IPP isomerase I),Isopentenyl-diphosphate Delta-isomerase II, chloroplastic (EC 5.3.3.2) (Isopentenyl pyrophosphate isomerase II) (IPP isomerase II),Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 chloroplast [GO:0009507]; cytosol [GO:0005829]; plastid [GO:0009536]; hydrolase activity [GO:0016787]; isopentenyl-diphosphate delta-isomerase activity [GO:0004452]; metal ion binding [GO:0046872]; chlorophyll biosynthetic process [GO:0015995]; dimethylallyl diphosphate biosynthetic process [GO:0050992]; isopentenyl diphosphate biosynthetic process [GO:0009240]; photosynthesis [GO:0015979],chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; hydrolase activity [GO:0016787]; isopentenyl-diphosphate delta-isomerase activity [GO:0004452]; metal ion binding [GO:0046872]; chlorophyll biosynthetic process [GO:0015995]; dimethylallyl diphosphate biosynthetic process [GO:0050992]; flower development [GO:0009908]; isopentenyl diphosphate biosynthetic process [GO:0009240]; photosynthesis [GO:0015979],hydrolase activity [GO:0016787]; isopentenyl-diphosphate delta-isomerase activity [GO:0004452]; isoprenoid biosynthetic process [GO:0008299] locus:2171382;,locus:2075412; AT5G16440,AT3G02780 isopentenyl-diphosphate Delta-isomerase Os07g0546000 protein (Putative isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase) (cDNA clone:001-039-H09, full insert sequence) (cDNA clone:J013044J20, full insert sequence),Os05g0413400 protein (Putative isopentenyl-diphosphate delta-isomerase) (cDNA clone:001-008-C05, full insert sequence) (cDNA clone:J013124F09, full insert sequence) Q8GVZ0,Q6AUB0 Q8GVZ0_ORYSJ,Q6AUB0_ORYSJ OJ1612_A04.101 P0006G05.104 Os07g0546000 OSNPB_070546000,Os05g0413400 OsJ_18544 OSNPB_050413400 P0017D10.11 ENOG411DUAX MBD12,MBD2 Q9FZP6,Q8LA53 MBD12_ARATH,MBD2_ARATH Putative methyl-CpG-binding domain protein 12 (AtMBD12) (MBD12) (Methyl-CpG-binding protein MBD12),Methyl-CpG-binding domain-containing protein 2 (AtMBD2) (MBD02) (Methyl-CpG-binding protein MBD2) FUNCTION: Probable transcriptional regulator. {ECO:0000250}. 17889,30767 Putative methyl-CpG-binding domain protein 12 (AtMBD12) (MBD12) (Methyl-CpG-binding protein MBD12),Methyl-CpG-binding domain-containing protein 2 (AtMBD2) (MBD02) (Methyl-CpG-binding protein MBD2) nucleus [GO:0005634]; methyl-CpG binding [GO:0008327]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; enzyme binding [GO:0019899]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in buds, flowers, stems, siliques and mature seeds. {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:15010609}. locus:504954793;,locus:2182643; AT5G35338,AT5G35330 methyl-CpG-binding domain-containing protein 2-like Os09g0494300 protein (cDNA clone:J033034D09, full insert sequence),Os09g0494300 protein (cDNA clone:002-126-B01, full insert sequence) Q0J0K9,B7F074 Q0J0K9_ORYSJ,B7F074_ORYSJ Os09g0494300 Os09g0494300 OSNPB_090494300,Os09g0494300 OSNPB_090494300 ENOG411DUAF MXI10.2 A0A1P8BA71,F4KA67,A0A1P8BA35 A0A1P8BA71_ARATH,F4KA67_ARATH,A0A1P8BA35_ARATH Alpha/beta-Hydrolases superfamily protein 22919,36914,20380 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2177421; AT5G38360 Inherit from NOG: Alpha beta hydrolase Os04g0381400 protein A0A0P0W981 A0A0P0W981_ORYSJ Os04g0381400 OSNPB_040381400 ENOG411DUAD Q94AA1 UN933_ARATH UNC93-like protein 3 50292 UNC93-like protein 3 integral component of membrane [GO:0016021] locus:2074929; AT3G09470 Ion channel regulatory protein UNC-93 Os12g0566900 protein (UNC93, putative, expressed) (cDNA clone:J013000H05, full insert sequence),Os12g0566800 protein,Os12g0567000 protein Q2QNF9,A0A0P0YBY4,A0A0P0YBF8 Q2QNF9_ORYSJ,A0A0P0YBY4_ORYSJ,A0A0P0YBF8_ORYSJ Os12g0566900 LOC_Os12g37939 Os12g0566900 OSNPB_120566900,Os12g0566800 OSNPB_120566800,Os12g0567000 OSNPB_120567000 ENOG411DUAB A0A1P8AVU0,F4I5R5 A0A1P8AVU0_ARATH,F4I5R5_ARATH Holliday junction resolvase 101093,112722 Holliday junction resolvase locus:2197858; AT1G04650 NA Os03g0144000 protein (Fragment) A0A0P0VSZ2 A0A0P0VSZ2_ORYSJ Os03g0144000 OSNPB_030144000 ENOG411DUAC Q94AI8,Q8VZ18,Q9XIM2,F4JF36 Q94AI8_ARATH,Q8VZ18_ARATH,Q9XIM2_ARATH,F4JF36_ARATH Expp1 protein (Uncharacterized protein At3g11800),Expp1 protein (Uncharacterized protein At3g44150),CSL zinc finger domain-containing protein (Uncharacterized protein At2g15910),Uncharacterized protein 27045,27087,40548,14738 Expp1 protein (Uncharacterized protein At3g11800),Expp1 protein (Uncharacterized protein At3g44150),CSL zinc finger domain-containing protein (Uncharacterized protein At2g15910),Uncharacterized protein plasma membrane [GO:0005886],metal ion binding [GO:0046872] locus:2081571;,locus:2081413;,locus:2044606;,locus:2114500; AT3G11800,AT3G44150,AT2G15910,AT3G48630 Expp1 protein Expressed protein (Os03g0647800 protein) (cDNA clone:006-211-C04, full insert sequence) (cDNA clone:J023047G07, full insert sequence),Expressed protein (Os03g0787100 protein) (cDNA clone:002-172-D03, full insert sequence) Q10G12,Q6F3B2 Q10G12_ORYSJ,Q6F3B2_ORYSJ Os03g0647800 LOC_Os03g44560 OsJ_11902 OSNPB_030647800,LOC_Os03g57320 Os03g0787100 OSJNBb0024J04.7 OSNPB_030787100 ENOG411DUAA F2A19.90 O81746,Q9M318,A0A1I9LS89,A0A1I9LS88 O81746_ARATH,Q9M318_ARATH,A0A1I9LS89_ARATH,A0A1I9LS88_ARATH Pectin lyase-like superfamily protein (Uncharacterized protein AT4g23500) (Uncharacterized protein F16G20.200),Pectin lyase-like superfamily protein (Uncharacterized protein F2A19.90),Pectin lyase-like superfamily protein ARA:AT4G23500-MONOMER;,ARA:AT3G61490-MONOMER; 54691,51939,53896,64705 Pectin lyase-like superfamily protein (Uncharacterized protein AT4g23500) (Uncharacterized protein F16G20.200),Pectin lyase-like superfamily protein (Uncharacterized protein F2A19.90),Pectin lyase-like superfamily protein cell wall [GO:0005618]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975],extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2117964;,locus:2082787; AT4G23500,AT3G61490 Polygalacturonase-like Os06g0106800 protein (Putative polygalacturonase) Q5VS63 Q5VS63_ORYSJ Os06g0106800 OsJ_19837 OSNPB_060106800 P0644B06.40 ENOG411DUAN HSP70-6,HSP70-7 Q9STW6,Q9LTX9 HSP7F_ARATH,HSP7G_ARATH Heat shock 70 kDa protein 6, chloroplastic (Chloroplast heat shock protein 70-1) (cpHsc70-1) (Heat shock protein 70-6) (AtHsp70-6),Heat shock 70 kDa protein 7, chloroplastic (Chloroplast heat shock protein 70-2) (cpHsc70-2) (Heat shock protein 70-7) (AtHsp70-7) DISRUPTION PHENOTYPE: Variegated cotyledons, malformed leaves, growth retardation and impaired root growth. Defective in protein import into chloroplasts during early developmental stages. {ECO:0000269|PubMed:18192441, ECO:0000269|PubMed:20484004, ECO:0000269|PubMed:20506024}.,DISRUPTION PHENOTYPE: Defective in protein import into chloroplasts during early developmental stages. {ECO:0000269|PubMed:20484004}. Variegated cotyledons; Malformed leaves; Dwarf; Short roots under vertical growth-H. Li-2008 FUNCTION: Acts redundantly with HSP70-7 in the thermotolerance of germinating seeds. Plays an important role in the protein precursor import into chloroplasts. {ECO:0000269|PubMed:18192441, ECO:0000269|PubMed:20484004, ECO:0000269|PubMed:20506024}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}.,FUNCTION: Acts redundantly with HSP70-6 in the thermotolerance of germinating seeds. Plays an important role in the protein precursor import into chloroplasts. {ECO:0000269|PubMed:18192441, ECO:0000269|PubMed:20484004, ECO:0000269|PubMed:20506024}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. 76508,76997 Heat shock 70 kDa protein 6, chloroplastic (Chloroplast heat shock protein 70-1) (cpHsc70-1) (Heat shock protein 70-6) (AtHsp70-6),Heat shock 70 kDa protein 7, chloroplastic (Chloroplast heat shock protein 70-2) (cpHsc70-2) (Heat shock protein 70-7) (AtHsp70-7) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; protein targeting to chloroplast [GO:0045036]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; viral process [GO:0016032],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid stroma [GO:0009532]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; protein targeting to chloroplast [GO:0045036]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408] DEVELOPMENTAL STAGE: Down-regulated during seed maturation. Up-regulated during germination. {ECO:0000269|PubMed:11402207}. locus:2135897;,locus:2158834; AT4G24280,AT5G49910 stromal 70 kDa heat shock-related protein Os05g0303000 protein (Fragment),70 kDa heat shock protein (Os12g0244100 protein) (Stromal 70 kDa heat shock-related protein, chloroplast, putative, expressed),Os12g0244100 protein (Fragment) Q0DJB9,Q2QV45,A0A0P0Y952,A0A0P0Y8M7,A0A0P0Y8U7 Q0DJB9_ORYSJ,Q2QV45_ORYSJ,A0A0P0Y952_ORYSJ,A0A0P0Y8M7_ORYSJ,A0A0P0Y8U7_ORYSJ Os05g0303000 Os05g0303000 OSNPB_050303000,LOC_Os12g14070 Os12g0244100 OSNPB_120244100,Os12g0244100 OSNPB_120244100 ENOG411DUAM ARP2,ARP1,RP1 P22738,P17094,A8MQQ1 RL32_ARATH,RL31_ARATH,A8MQQ1_ARATH 60S ribosomal protein L3-2,60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207),Ribosomal protein 1 Embryo defective; Globular-D. Meinke-2002 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 44546,44559,35064 60S ribosomal protein L3-2,60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207),Ribosomal protein 1 cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; ribosome assembly [GO:0042255]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2200873;,locus:2018605; AT1G61580,AT1G43170 60S ribosomal protein 60S ribosomal protein L3,60S ribosomal protein L3, putative, expressed (Os11g0168200 protein) (Ribosomal protein L3) (Ribosomal protein L3, putative) (Ribosomal protein L3B) (cDNA clone:J033040J04, full insert sequence) (cDNA clone:J033041E13, full insert sequence) P35684,Q53JG0 RL3_ORYSJ,Q53JG0_ORYSJ RPL3 Os12g0167900 LOC_Os12g07010,RPL3B LOC_Os11g06750 Os11g0168200 OsJ_33102 OSNPB_110168200 FUNCTION: The L3 protein is a component of the large subunit of cytoplasmic ribosomes. ENOG411DUAJ S2P F4JUU5,F4JUU7,A0A1P8B655,A0A1P8B660,A0A1P8B657,F4JUU6 S2P_ARATH,F4JUU7_ARATH,A0A1P8B655_ARATH,A0A1P8B660_ARATH,A0A1P8B657_ARATH,F4JUU6_ARATH Membrane-bound transcription factor site-2 protease homolog (EC 3.4.24.-) (Endopeptidase S2P),Peptidase M50 family protein DISRUPTION PHENOTYPE: Short root and increased root branching. Mutant plants have increased sensitivity to salt-induced osmotic stress and tunicamycin. {ECO:0000269|PubMed:20876872}. FUNCTION: Metalloprotease that catalyzes the second step (site-2 cleavage) in the proteolytic activation of various factors, after site-1 cleavage. Part of a regulated intramembrane proteolysis (RIP) cascade. After ER stress, cleaves BZIP17 and BZIP28 proteins which functions as stress sensors and transducers in ER stress signaling pathway. The N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as proteins involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth. {ECO:0000269|PubMed:20876872}. 3.4.24.- 56824,41369,42911,39388,52977,43948 Membrane-bound transcription factor site-2 protease homolog (EC 3.4.24.-) (Endopeptidase S2P),Peptidase M50 family protein Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; cellular hyperosmotic salinity response [GO:0071475]; proteolysis [GO:0006508],integral component of membrane [GO:0016021]; metalloendopeptidase activity [GO:0004222] TISSUE SPECIFICITY: Expressed in the vasculature of roots, cotyledons and leaves. {ECO:0000269|PubMed:20876872}. locus:2120352; AT4G20310 Peptidase family M50 Os01g0654200 protein (Fragment) A0A0N7KDF6 A0A0N7KDF6_ORYSJ Os01g0654200 OSNPB_010654200 ENOG411DUAH CPI1 Q9M643,A0A1P8BFJ3,F4K8Y4 CCI1_ARATH,A0A1P8BFJ3_ARATH,F4K8Y4_ARATH Cycloeucalenol cycloisomerase (EC 5.5.1.9) (Cycloeucalenol--obtusifoliol isomerase) (Cyclopropyl sterol isomerase),Cyclopropyl isomerase sterile dwarf phenotype with small round dark leaves a short hypocotyl and root and defective root gravitropism. Roots presented defects in directional orientation along the gravity vector normal meristem size but a shorter elongation zone reduced epidermal cell length delayed gravitropic curvature and slower growth than the wild-type Dwarf; Reduced root gravitropism; Sterile-M. Grebe-2008 FUNCTION: Converts pentacyclic cyclopropyl sterols to tetracyclic sterols. ARA:AT5G50375-MONOMER;MetaCyc:AT5G50375-MONOMER; 5.5.1.9; 5.5.1.9 32644,24930,33158 Cycloeucalenol cycloisomerase (EC 5.5.1.9) (Cycloeucalenol--obtusifoliol isomerase) (Cyclopropyl sterol isomerase),Cyclopropyl isomerase integral component of membrane [GO:0016021]; cycloeucalenol cycloisomerase activity [GO:0047793],integral component of membrane [GO:0016021]; isomerase activity [GO:0016853],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; cycloeucalenol cycloisomerase activity [GO:0047793]; cytokinesis by cell plate formation [GO:0000911]; pinocytosis [GO:0006907]; positive gravitropism [GO:0009958]; sterol biosynthetic process [GO:0016126] locus:505006687; AT5G50375 cycloeucalenol Os11g0302500 protein A0A0P0Y1C2 A0A0P0Y1C2_ORYSJ Os11g0302500 OSNPB_110302500 ENOG411DUAI Q8L726 Q8L726_ARATH At2g21080 (Ras guanine nucleotide exchange factor K) (Uncharacterized protein At2g21080) 46792 At2g21080 (Ras guanine nucleotide exchange factor K) (Uncharacterized protein At2g21080) integral component of membrane [GO:0016021]; vacuole [GO:0005773] locus:2047032; AT2G21080 Protein of unknown function (DUF3537) NA NA NA NA NA NA NA ENOG411DUA4 C0LGS2,Q9LR04 Y4361_ARATH,Q9LR04_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (EC 2.7.11.1),F10A5.16 (Leucine-rich receptor-like protein kinase family protein) (Putative receptor-like protein kinase) 2.7.11.1 123664,123528 Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (EC 2.7.11.1),F10A5.16 (Leucine-rich receptor-like protein kinase family protein) (Putative receptor-like protein kinase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],cell plate [GO:0009504]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; microtubule cytoskeleton organization [GO:0000226]; stomatal complex morphogenesis [GO:0010103] locus:2122239;,locus:2005629; AT4G36180,AT1G75640 LRR receptor-like serine threonine-protein kinase Probable inactive leucine-rich repeat receptor kinase XIAO G9LZD7 XIAO_ORYSJ XIAO Os04g0576900 LOC_Os04g48760 OSJNBa0020J04.8 DISRUPTION PHENOTYPE: Dwarf plants with erect leaves. Reduced organ sizes due to decreased cell numbers resulting from reduced cell division rate. {ECO:0000269|PubMed:22151303}. FUNCTION: Functions in the early stages of organ development by regulating cell division rate. Is probably involved in the regulation of a number of cell-cycle genes. May act as regulator of brassinosteroid (BR) signaling and cell-cycle controlling organ growth. {ECO:0000269|PubMed:22151303}. MISCELLANEOUS: Xiao means small in Chinese. {ECO:0000305|PubMed:22151303}. ENOG411DUA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIC-type PPIASE domain Os07g0687500 protein (Peptidyl-prolyl cis-trans isomerase-like protein),Os07g0687500 protein (Fragment) Q69WA8,A0A0P0XAD9 Q69WA8_ORYSJ,A0A0P0XAD9_ORYSJ OJ1150_E04.123 Os07g0687500 OSNPB_070687500,Os07g0687500 OSNPB_070687500 ENOG411DUA2 F14P3.15 Q8W4A0,Q9LF21,Q0WSE9,F4J2B4 Q8W4A0_ARATH,Q9LF21_ARATH,Q0WSE9_ARATH,F4J2B4_ARATH Eukaryotic translation initiation factor 3 subunit M (eIF3m),Proteasome component (PCI) domain protein FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03012}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 46785,49767,46418,41157 Eukaryotic translation initiation factor 3 subunit M (eIF3m),Proteasome component (PCI) domain protein cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; proteasome complex [GO:0000502]; translation initiation factor activity [GO:0003743]; cytoplasmic translational initiation [GO:0002183]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446],eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; proteasome complex [GO:0000502]; translation initiation factor activity [GO:0003743]; cytoplasmic translational initiation [GO:0002183]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446],eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; proteasome complex [GO:0000502]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446],proteasome complex [GO:0000502] locus:2076517;,locus:2180917; AT3G02200,AT5G15610 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit M (eIF3m) Q0JFH5 Q0JFH5_ORYSJ Os04g0103200 Os04g0103200 OsJ_13500 OSNPB_040103200 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03012}. ENOG411DUA1 MZF18.12 Q9FLW1,Q9LTG3 Q9FLW1_ARATH,Q9LTG3_ARATH Keratin-associated protein (DUF819) (Similarity to unknown protein),Keratin-associated protein, putative (DUF819) (Similarity to unknown protein) (Uncharacterized protein At5g52540) (Uncharacterized protein At5g52540; F6N7.1) 47145,47645 Keratin-associated protein (DUF819) (Similarity to unknown protein),Keratin-associated protein, putative (DUF819) (Similarity to unknown protein) (Uncharacterized protein At5g52540) (Uncharacterized protein At5g52540; F6N7.1) integral component of membrane [GO:0016021],chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021] locus:2178697;,locus:2149559; AT5G24000,AT5G52540 Protein of unknown function (DUF819) Os06g0107100 protein,Os06g0107100 protein (cDNA clone:J013161L13, full insert sequence),Os03g0681000 protein (Fragment) Q5VS60,Q5VS59,A0A0P0W1V8 Q5VS60_ORYSJ,Q5VS59_ORYSJ,A0A0P0W1V8_ORYSJ P0644B06.44-2 Os06g0107100 OSNPB_060107100,P0644B06.44-1 Os06g0107100 OSNPB_060107100,Os03g0681000 OSNPB_030681000 ENOG411DUA8 TPR6 Q9C650 Q9C650_ARATH Peptidylprolyl isomerase, putative (Tetratricopeptide repeat (TPR)-like superfamily protein) 18681 Peptidylprolyl isomerase, putative (Tetratricopeptide repeat (TPR)-like superfamily protein) isomerase activity [GO:0016853] locus:2037650; AT1G58450 70 kDa peptidyl-prolyl NA NA NA NA NA NA NA ENOG411DUA9 Q9XI76,Q9XI75 Q9XI76_ARATH,Q9XI75_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Dioxygenase-like protein) (F7A19.20 protein) (Putative dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (F7A19.21 protein) (Putative dioxygenase) ARA:AT1G14120-MONOMER;,ARA:AT1G14130-MONOMER; 35119,34635 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Dioxygenase-like protein) (F7A19.20 protein) (Putative dioxygenase),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (F7A19.21 protein) (Putative dioxygenase) dioxygenase activity [GO:0051213]; indole-3-acetaldehyde oxidase activity [GO:0050302]; metal ion binding [GO:0046872]; auxin catabolic process [GO:0009852],cytoplasm [GO:0005737]; nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; indole-3-acetaldehyde oxidase activity [GO:0050302]; metal ion binding [GO:0046872]; auxin catabolic process [GO:0009852]; auxin homeostasis [GO:0010252] locus:2035848;,locus:2035859; AT1G14120,AT1G14130 2OG-Fe(II) oxygenase superfamily 2-oxoglutarate-dependent dioxygenase DAO (EC 1.14.11.-) (Protein DIOXYGENASE FOR AUXIN OXIDATION),Os02g0592000 protein Q7XKU5,A0A0N7KFL0 DAO_ORYSJ,A0A0N7KFL0_ORYSJ DAO Os04g0475600 LOC_Os04g39980 OSJNBa0022H21.12,Os02g0592000 OSNPB_020592000 DISRUPTION PHENOTYPE: Male sterility and production of parthenocarpic seeds. Increased levels of free IAA in anthers and ovaries. {ECO:0000269|PubMed:24094741}. FUNCTION: 2-oxoglutarate-dependent dioxygenase essential for auxin catabolism and maintenance of auxin homeostasis in reproductive organs. Catalyzes the irreversible oxidation of indole-3-acetic acid (IAA) to the biologically inactive 2-oxoindole-3-acetic acid (OxIAA). {ECO:0000269|PubMed:24094741}. ENOG411DUSH TIF3A1 Q9LD55 EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A (eIF3a) (Eukaryotic translation initiation factor 3 large subunit) (Eukaryotic translation initiation factor 3 subunit 10) (eIF-3-theta) (p114) FUNCTION: RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03000}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 114300 Eukaryotic translation initiation factor 3 subunit A (eIF3a) (Eukaryotic translation initiation factor 3 large subunit) (Eukaryotic translation initiation factor 3 subunit 10) (eIF-3-theta) (p114) cytosol [GO:0005829]; eukaryotic translation initiation factor 3 complex [GO:0005852]; eukaryotic translation initiation factor 3 complex, eIF3e [GO:0071540]; eukaryotic translation initiation factor 3 complex, eIF3m [GO:0071541]; multi-eIF complex [GO:0043614]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; formation of cytoplasmic translation initiation complex [GO:0001732]; translation reinitiation [GO:0002188]; translational initiation [GO:0006413] locus:2123076; AT4G11420 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit A (eIF3a) (Eukaryotic translation initiation factor 3 subunit 10),Os01g0120800 protein (Putative translation initiation factor),Os01g0120800 protein (Fragment),Eukaryotic translation initiation factor 3 subunit A (Fragment) Q5ZEN1,Q5ZEN0,A0A0P0UXN0,A0A0P0UXG7,A0A0P0UXC4,A0A0P0UXW3 Q5ZEN1_ORYSJ,Q5ZEN0_ORYSJ,A0A0P0UXN0_ORYSJ,A0A0P0UXG7_ORYSJ,A0A0P0UXC4_ORYSJ,A0A0P0UXW3_ORYSJ P0684C01.5-1 Os01g0120800 OsJ_00175 OSNPB_010120800,P0684C01.5-2 Os01g0120800 OSNPB_010120800,Os01g0120800 OSNPB_010120800 FUNCTION: RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03000}. ENOG411DUSG GLT1 Q9LV03 GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic (EC 1.4.1.14) (NADH-dependent glutamate synthase 1) (NADH-GOGAT 1) DISRUPTION PHENOTYPE: Defect in growth and glutamate biosynthesis under non-photorespiratory conditions. {ECO:0000269|PubMed:11844111}. Low chlorophyll levels (no other phenotypes detected); Reduced fresh weight and low glutamate levels when grown under 1% CO2-G. Coruzzi-2002 FUNCTION: Involved in glutamate biosynthesis. Required for non-photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots. {ECO:0000269|PubMed:11844111}. PATHWAY: Amino-acid biosynthesis; L-glutamate biosynthesis via GLT pathway; L-glutamate from 2-oxoglutarate and L-glutamine (NAD(+) route): step 1/1.; PATHWAY: Energy metabolism; nitrogen metabolism. ARA:AT5G53460-MONOMER; 1.4.1.14; 1.4.1.14 241899 Glutamate synthase 1 [NADH], chloroplastic (EC 1.4.1.14) (NADH-dependent glutamate synthase 1) (NADH-GOGAT 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3 iron, 4 sulfur cluster binding [GO:0051538]; flavin adenine dinucleotide binding [GO:0050660]; FMN binding [GO:0010181]; glutamate synthase (NADH) activity [GO:0016040]; iron ion binding [GO:0005506]; ammonia assimilation cycle [GO:0019676]; developmental growth [GO:0048589]; glutamate biosynthetic process [GO:0006537]; L-glutamate biosynthetic process [GO:0097054]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Highly expressed in roots and at low levels in leaves. {ECO:0000269|PubMed:11844111}. locus:2178461; AT5G53460 Glutamate synthase Glutamate synthase 1 [NADH], chloroplastic (EC 1.4.1.14) (NADH-dependent glutamate synthase 1) (NADH-GOGAT 1),Os01g0682001 protein (Fragment) Q0JKD0,A0A0P0V6N3 GLT1_ORYSJ,A0A0P0V6N3_ORYSJ Os01g0681900 LOC_Os01g48960,Os01g0682001 OSNPB_010682001 DISRUPTION PHENOTYPE: Inhibition of the main root elongation when grown in presence of ammonium chloride. Reduced plant height, biomass and panicle number. {ECO:0000269|PubMed:20213442}. FUNCTION: Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers. {ECO:0000269|PubMed:20213442}. ENOG411DQWK PYL8,RCAR3 Q9FGM1,F4KJ16 PYL8_ARATH,F4KJ16_ARATH Abscisic acid receptor PYL8 (ABI1-binding protein 1) (PYR1-like protein 8) (Regulatory components of ABA receptor 3),Regulatory components of ABA receptor 3 FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) in an ABA-independent manner but more efficiently when activated by ABA. Confers enhanced sensitivity to ABA (PubMed:19407143, PubMed:19624469, PubMed:19769575, PubMed:19889877, PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). Mediates crosstalk between ABA and auxin signaling to regulate lateral root growth. Required for lateral root growth suppression by ABA. In response to auxin, promotes lateral root growth by enhancing MYB77-dependent transcription of the auxin-responsive gene IAA19. Enhances the abilities of MYB44 and MYB73 to activate IAA19 gene (PubMed:24894996). {ECO:0000269|PubMed:19407143, ECO:0000269|PubMed:19624469, ECO:0000269|PubMed:19769575, ECO:0000269|PubMed:19889877, ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015, ECO:0000269|PubMed:24894996}. 21397,18183 Abscisic acid receptor PYL8 (ABI1-binding protein 1) (PYR1-like protein 8) (Regulatory components of ABA receptor 3),Regulatory components of ABA receptor 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; response to abscisic acid [GO:0009737] locus:2163731; AT5G53160 abscisic acid receptor Abscisic acid receptor PYL5 (PYR1-like protein 11) (OsPYL11) (PYR1-like protein 5) (OsPYL5) (Regulatory components of ABA receptor 5),Abscisic acid receptor PYL3 (PYR1-like protein 10) (OsPYL10) (PYR1-like protein 3) (OsPYL3) (Regulatory components of ABA receptor 3),Bet v I allergen-like (Os02g0255300 protein),Bet v I allergen-like (Os06g0527800 protein) (cDNA clone:002-141-B05, full insert sequence),Bet v I allergen-like (Os06g0528300 protein),Os06g0526466 protein,Os06g0526400 protein Q6I5C3,Q6EN42,Q6EN43,Q652Y8,Q5Z7A8,A0A0P0WX75,A0A0P0WXG6 PYL5_ORYSJ,PYL3_ORYSJ,Q6EN43_ORYSJ,Q652Y8_ORYSJ,Q5Z7A8_ORYSJ,A0A0P0WX75_ORYSJ,A0A0P0WXG6_ORYSJ PYL5 PYL11 RCAR5 Os05g0213500 LOC_Os05g12260 OSJNBb0067H15.8,PYL3 PYL10 RCAR3 Os02g0255500 LOC_Os02g15640 OSJNBa0052K15.19 P0613F08.1,OSJNBa0052K15.17 Os02g0255300 OSNPB_020255300,Os06g0527800 Os06g0527800 OsJ_21545 OSJNBa0043B22.39 OSNPB_060527800 P0001B01.19,Os06g0528300 Os06g0528300 OsJ_21547 OSNPB_060528300 P0001B01.26,Os06g0526466 OSNPB_060526466,Os06g0526400 OSNPB_060526400 FUNCTION: Intracellular abscisic acid (ABA) receptor that functions as a positive regulator of ABA signaling pathway (PubMed:22071266, PubMed:24474809). Together with ABI5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). Acts as positive regulator of abiotic stress-responsive gene expression (PubMed:24474809). Inhibits the protein phosphatases PP2C06 and PP2C09 when activated by ABA (PubMed:24743650). {ECO:0000269|PubMed:22071266, ECO:0000269|PubMed:24474809, ECO:0000269|PubMed:24743650}.,FUNCTION: Involved in abscisic acid (ABA) signaling during seed germination and abiotic stress response. Acts as positive regulator of ABA-mediated inhibition of seed germination, and tolerance to drought and cold stresses (PubMed:26362328). Together with PP2C50 and SAPK10, may form an ABA signaling module involved in stress response (PubMed:28827170). Inhibits the protein phosphatases PP2C06 and PP2C09 when activated by abscisic acid (ABA) (PubMed:24743650). {ECO:0000269|PubMed:24743650, ECO:0000269|PubMed:26362328, ECO:0000269|PubMed:28827170}. MISCELLANEOUS: Plants overexpressing PYL5 exhibit abscisic acid (ABA) hypersensitive phenotypes (PubMed:22071266). Plants overexpressing PYL5 exhibit tolerance to salt and drought stresses, but are hypersensitive to osmotic stress and ABA during vegetative growth (PubMed:24474809). {ECO:0000269|PubMed:22071266, ECO:0000269|PubMed:24474809}.,MISCELLANEOUS: Plants overexpressing PYL3 exhibit abscisic acid (ABA) hypersensitive phenotype during seed germination. Plants overexpressing PYL3 exhibit tolerance to cold and drought stresses. {ECO:0000269|PubMed:26362328}. ENOG411E5KN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os02g0824500 protein (Putative DNA-binding protein) (cDNA clone:002-181-A10, full insert sequence) Q6KAA6 Q6KAA6_ORYSJ Os02g0824500 OJ1063_D06.13 OsJ_08942 OSNPB_020824500 ENOG411E5KM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CotH protein NA NA NA NA NA NA NA ENOG411E5KK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transaldolase NA NA NA NA NA NA NA ENOG411E5KH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein C2H2 type zinc finger transcription factor ZFP31 (Os03g0610400 protein) (Putative C2H2 type zinc finger protein) (Putative zinc finger protein) (Zinc finger transcription factor OsZFP34) (Zinc finger, C2H2 type family protein, expressed) Q7X850 Q7X850_ORYSJ ZFP31 OSJNBb0007E22.5 LOC_Os03g41390 Os03g0610400 OSJNBa0034J04.16 OSNPB_030610400 ENOG411E5KG Q9T0H4,Q9LIR5 Q9T0H4_ARATH,Q9LIR5_ARATH Golgin family A protein (Uncharacterized protein At4g13540) (Uncharacterized protein T6G15.90),Troponin T, skeletal protein (Uncharacterized protein At3g23930) (Uncharacterized protein At3g23930/F14O13_12) 24966,26999 Golgin family A protein (Uncharacterized protein At4g13540) (Uncharacterized protein T6G15.90),Troponin T, skeletal protein (Uncharacterized protein At3g23930) (Uncharacterized protein At3g23930/F14O13_12) locus:2140822;,locus:2076101; AT4G13540,AT3G23930 NA NA NA NA NA NA NA NA ENOG411E5KE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os08g0452900 protein (Fragment) A0A0P0XGQ0 A0A0P0XGQ0_ORYSJ Os08g0452900 OSNPB_080452900 ENOG411E5KC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os08g0551250 protein Q6Z3H7 Q6Z3H7_ORYSJ Os08g0551250 OsJ_28205 OSJNBb0011H15.8 OSNPB_080551250 ENOG411E5KB IAA11 Q38829,A8MR39,F4JLC8 IAA11_ARATH,A8MR39_ARATH,F4JLC8_ARATH Auxin-responsive protein IAA11 (Indoleacetic acid-induced protein 11),Auxin-responsive protein FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 26516,33334,26896 Auxin-responsive protein IAA11 (Indoleacetic acid-induced protein 11),Auxin-responsive protein nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Preferentially expressed in stems and flowers. {ECO:0000269|PubMed:7658471}. locus:2139890; AT4G28640 AUX/IAA family NA NA NA NA NA NA NA ENOG411E5KA GRF8 Q9SU44,A0A1P8B7V6,A0A1P8B7W1 GRF8_ARATH,A0A1P8B7V6_ARATH,A0A1P8B7W1_ARATH Growth-regulating factor 8 (AtGRF8) (Transcription activator GRF8),Growth-regulating factor 8 FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. 54609,51636,47207 Growth-regulating factor 8 (AtGRF8) (Transcription activator GRF8),Growth-regulating factor 8 chloroplast envelope [GO:0009941]; nucleus [GO:0005634]; ATP binding [GO:0005524]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ATP binding [GO:0005524]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269|PubMed:12974814}. locus:2134986; AT4G24150 QLQ NA NA NA NA NA NA NA ENOG411E5KZ ZFP4 Q39263 ZFP4_ARATH Zinc finger protein 4 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seeds are hypersensitivite to inhibition of germination by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. FUNCTION: Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. MISCELLANEOUS: Seeds over-expressing ZFP4 are insensitive to inhibition of germination by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. 28309 Zinc finger protein 4 nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; glucosinolate metabolic process [GO:0019760]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; regulation of transcription, DNA-templated [GO:0006355] locus:2013820; AT1G66140 zinc finger protein NA NA NA NA NA NA NA ENOG411E5KY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os08g0450900 protein (Putative myb-related protein) Q6ZLF1 Q6ZLF1_ORYSJ OJ1005_H01.28 Os08g0450900 OSNPB_080450900 ENOG411E5KX ATL74 Q9LZV8 ATL74_ARATH RING-H2 finger protein ATL74 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL74) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 16793 RING-H2 finger protein ATL74 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL74) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2181032; AT5G01880 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E5KW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os07g0290500 protein A3BIR1 A3BIR1_ORYSJ Os07g0290500 OsJ_23881 OSNPB_070290500 ENOG411E5KV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411E5KU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0759000 protein Q5JLR1 Q5JLR1_ORYSJ Os01g0759000 B1131G08.30 OSNPB_010759000 ENOG411E5KT ATHB-16 Q940J1 ATB16_ARATH Homeobox-leucine zipper protein ATHB-16 (HD-ZIP protein ATHB-16) (Homeodomain transcription factor ATHB-16) FUNCTION: Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. 33395 Homeobox-leucine zipper protein ATHB-16 (HD-ZIP protein ATHB-16) (Homeodomain transcription factor ATHB-16) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of cell growth [GO:0030308]; photoperiodism, flowering [GO:0048573]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. locus:2140055; AT4G40060 transcription factor Homeobox-leucine zipper protein HOX20 (HD-ZIP protein HOX20) (Homeodomain transcription factor HOX20) (OsHox20),Homeobox-leucine zipper protein HOX4 (HD-ZIP protein HOX4) (Homeodomain transcription factor HOX4) (OsHox4) Q6Z248,Q6K498 HOX20_ORYSJ,HOX4_ORYSJ HOX20 Os08g0481400 LOC_Os08g37580 OSJNBb0092C08.26,HOX4 Os09g0470500 LOC_Os09g29460 OJ1595_D08.21 FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. ENOG411E5K9 Q570P7 DUSL1_ARATH Probable inactive dual specificity protein phosphatase-like At4g18593 16257 Probable inactive dual specificity protein phosphatase-like At4g18593 locus:505006495; AT4G18593 dual specificity protein Dual specificity phosphatase-like (Os02g0251700 protein) (cDNA clone:J033071E07, full insert sequence) Q6K546 Q6K546_ORYSJ Os02g0251700 Os02g0251700 OJ1113_G05.27 OsJ_06100 OSJNBa0009N02.2 OSNPB_020251700 ENOG411E5K8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os09g0572000 protein (cDNA, clone: J065136G16, full insert sequence) B7F8P7 B7F8P7_ORYSJ Os09g0572000 OSNPB_090572000 ENOG411E5K3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os05g0312400 protein A0A0P0WKG6 A0A0P0WKG6_ORYSJ Os05g0312400 OSNPB_050312400 ENOG411E5K1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0191800 protein (cDNA clone:001-112-E02, full insert sequence) Q0E364 Q0E364_ORYSJ Os02g0191800 Os02g0191800 OSNPB_020191800 ENOG411EKRE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic protein of unknown function (DUF914) Os06g0681700 protein (Solute carrier family 35, member F5-like) Q653X2 Q653X2_ORYSJ Os06g0681700 Os06g0681700 OsJ_22387 OSNPB_060681700 P0547F09.23 ENOG411EKR7 LRR-RLK C0LGN2 Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 (EC 2.7.11.1) 2.7.11.1 112277 Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; regulation of innate immune response [GO:0045088] locus:2099352; AT3G14840 Leucine-rich repeat family protein NA NA NA NA NA NA NA ENOG411EKR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBM_2 NA NA NA NA NA NA NA ENOG411EG5A T19F11.4 Q9SRN2,A0A1I9LQ90 Q9SRN2_ARATH,A0A1I9LQ90_ARATH At3g11640 (T19F11.4 protein) (Transmembrane protein),Transmembrane protein 20729,17492 At3g11640 (T19F11.4 protein) (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2098358; AT3G11640 NA NA NA NA NA NA NA NA ENOG411EIGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ycf1 NA NA NA NA NA NA NA ENOG411EIGK O04339 O04339_ARATH Glycine-rich protein (Putative glycine-rich protein) 14266 Glycine-rich protein (Putative glycine-rich protein) locus:2064422; AT2G30560 NA NA NA NA NA NA NA NA ENOG411EIGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0531300 protein,Os10g0365050 protein (Fragment),Os10g0528651 protein,Os10g0530800 protein (Fragment),Os10g0530750 protein (Fragment),Os10g0529600 protein (Fragment) Q0IW58,A0A0P0XT97,A0A0P0XWH3,A0A0P0XX46,A0A0N7KS43,A0A0P0XWK4 Q0IW58_ORYSJ,A0A0P0XT97_ORYSJ,A0A0P0XWH3_ORYSJ,A0A0P0XX46_ORYSJ,A0A0N7KS43_ORYSJ,A0A0P0XWK4_ORYSJ Os10g0531300 Os10g0531300 OSNPB_100531300,Os10g0365050 OSNPB_100365050,Os10g0528651 OSNPB_100528651,Os10g0530800 OSNPB_100530800,Os10g0530750 OSNPB_100530750,Os10g0529600 OSNPB_100529600 ENOG411EIG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0602701 protein,Os03g0379650 protein,Os03g0154750 protein,Os11g0602550 protein (Fragment) A0A0P0Y494,A0A0P0VY42,A0A0P0VT96,A0A0P0Y480 A0A0P0Y494_ORYSJ,A0A0P0VY42_ORYSJ,A0A0P0VT96_ORYSJ,A0A0P0Y480_ORYSJ Os11g0602701 OSNPB_110602701,Os03g0379650 OSNPB_030379650,Os03g0154750 OSNPB_030154750,Os11g0602550 OSNPB_110602550 ENOG411E1P8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase Os01g0810500 protein A0A0P0V9F1 A0A0P0V9F1_ORYSJ Os01g0810500 OSNPB_010810500 ENOG411E1P9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF966) NA NA NA NA NA NA NA ENOG411E1P6 NCL Q8L636 NCL_ARATH Sodium/calcium exchanger NCL (Na(+)/Ca(2+)-exchange protein NCL) (Protein NCX-like) (AtNCL) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:23148213). No visible phenotype under short day (SD) conditions, but early flowering under long day (LD) conditions (PubMed:26296956). {ECO:0000269|PubMed:23148213, ECO:0000269|PubMed:26296956}. FUNCTION: Possesses sodium/calcium exchanger (NCX) activity when expressed in a heterologous mammalian CHO-K1 cell system (PubMed:23148213). Does not possess cation/proton exchanger (CAX) or sodium/proton (NHX) activity when expressed in a heterologous yeast cell system. Has the ability to bind calcium in vitro. Participates in the maintenance of calcium homeostasis (PubMed:23148213, PubMed:26296956). May play a role in auxin response, diurnal rhythm and flowering time (PubMed:26296956). Involved in salt stress response (PubMed:23148213). {ECO:0000269|PubMed:23148213, ECO:0000269|PubMed:26296956}. 63417 Sodium/calcium exchanger NCL (Na(+)/Ca(2+)-exchange protein NCL) (Protein NCX-like) (AtNCL) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; calcium:sodium antiporter activity [GO:0005432]; calcium ion homeostasis [GO:0055074]; cellular response to salt stress [GO:0071472] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petals, stamens, ovules and siliques. {ECO:0000269|PubMed:23148213}. locus:2009580; AT1G53210 sodium calcium exchanger family protein Sodium/calcium exchanger NCL1 (Na(+)/Ca(2+)-exchange protein NCL1) (OsEFCAX1) (Protein NCX-like 1) (OsNCL1),Sodium/calcium exchanger NCL2 (Na(+)/Ca(2+)-exchange protein NCL2) (OsEFCAX2) (Protein NCX-like 2) (OsNCL2) Q5QNI2,Q6K3R5 NCL1_ORYSJ,NCL2_ORYSJ NCL1 Os01g0212400 LOC_Os01g11414 OsJ_00857 P0031E09.40,NCL2 Os02g0247800 LOC_Os02g14980 OsJ_06069 OSJNBa0011N12.6 OSJNBa0090H18.33 FUNCTION: May function as a sodium/calcium exchanger (NCX) and participate in the maintenance of calcium homeostasis. May play a role abiotic stress responses. {ECO:0000250|UniProtKB:Q8L636}. ENOG411E1P7 F4K498 F4K498_ARATH Prefoldin chaperone subunit family protein 72012 Prefoldin chaperone subunit family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2146440; AT5G27330 NA NA NA NA NA NA NA NA ENOG411E1P4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Conserved hypothetical protein OSJNBa0039K24.18 protein (Os04g0689300 protein) (cDNA clone:J023075P06, full insert sequence) Q7XST8 Q7XST8_ORYSJ Os04g0689300 Os04g0689300 OSJNBa0039K24.18 OSNPB_040689300 ENOG411E1P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acidPPc Os01g0666000 protein (Phosphatidic acid phosphatase beta-like) Q5SN48 Q5SN48_ORYSJ Os01g0666000 Os01g0666000 OsJ_02930 OSJNBb0063G05.1 OSNPB_010666000 P0003E08.34 ENOG411E1P2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Coproporphyrinogen III oxidase NA NA NA NA NA NA NA ENOG411E1P3 Q6NQB8 Q6NQB8_ARATH At4g08940 (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At4g08940) 46585 At4g08940 (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At4g08940) hydrolase activity [GO:0016787]; response to oxidative stress [GO:0006979] locus:2138738; AT4G08940 Plant organelle RNA recognition domain Os09g0473400 protein Q6K4B7 Q6K4B7_ORYSJ Os09g0473400 OJ1509_C06.27 OsJ_29727 OSJNBa0026C08.11 OSNPB_090473400 ENOG411E1P0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411E1P1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE domain Os02g0702800 protein (cDNA clone:J023113L24, full insert sequence) Q0DYC1 Q0DYC1_ORYSJ Os02g0702800 Os02g0702800 OSNPB_020702800 ENOG411E1PZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium:dicarboxylate symporter family NA NA NA NA NA NA NA ENOG411E1PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Salt tolerance-like protein AP2-EREBP transcription factor (OSJNBa0011L07.9 protein) (Os04g0540200 protein) (cDNA clone:006-303-A11, full insert sequence) Q7XR92 Q7XR92_ORYSJ Os04g0540200 Os04g0540200 OsJ_15624 OSJNBa0011L07.9 OSNPB_040540200 ENOG411E1PV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family Os01g0702300 protein (Fragment) A0A0P0V749 A0A0P0V749_ORYSJ Os01g0702300 OSNPB_010702300 ENOG411E1PW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein Os09g0491772 protein B9G4B3 B9G4B3_ORYSJ Os09g0491772 OsJ_29849 OSNPB_090491772 ENOG411E1PT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) Os07g0619500 protein (cDNA clone:002-130-D09, full insert sequence) (cDNA clone:J013104E22, full insert sequence) Q8LHQ4 Q8LHQ4_ORYSJ P0560B08.115 Os07g0619500 OSNPB_070619500 ENOG411E1PU CYB561D Q9C540 ACFR4_ARATH Probable transmembrane ascorbate ferrireductase 4 (EC 1.16.5.1) (Artb561-4) (Cytochrome b-561D) (Protein b561A.tha6) FUNCTION: Two-heme-containing cytochrome. May catalyze ascorbate-dependent trans-membrane ferric-chelate reduction (By similarity). {ECO:0000250}. R-ATH-917937; 1.16.5.1 26307 Probable transmembrane ascorbate ferrireductase 4 (EC 1.16.5.1) (Artb561-4) (Cytochrome b-561D) (Protein b561A.tha6) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; oxidation-reduction process [GO:0055114] locus:2011425; AT1G26100 B561 family NA NA NA NA NA NA NA ENOG411E1PR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411E1PS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os03g0436766 protein (Os11g0395867 protein),Os03g0436600 protein C7J0D8,A0A0P0VZ45 C7J0D8_ORYSJ,A0A0P0VZ45_ORYSJ Os03g0436766 Os11g0395867 OSNPB_110395867,Os03g0436600 OSNPB_030436600 ENOG411E1PP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tyrosine phosphatase family Os06g0208700 protein A0A0P0WTT4 A0A0P0WTT4_ORYSJ Os06g0208700 OSNPB_060208700 ENOG411E1PQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL_TRIO_N NA NA NA NA NA NA NA ENOG411E1PN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0262600 protein (Fragment) A0A0P0X5B1 A0A0P0X5B1_ORYSJ Os07g0262600 OSNPB_070262600 ENOG411E1PM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411E1PJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase Rpb1 domain 5 NA NA NA NA NA NA NA ENOG411E1PK MEE22 F4IIV6,F4IIV5 F4IIV6_ARATH,F4IIV5_ARATH Maternal effect embryo arrest 22 Shoot apical meristem terminates prematurely. The embryonic SAM appears normal during embryogenesis but after germination it begins to show signs of disorganization and decreasing size. Null: Embryo defective; Preglobular; Knockdown: Short inflorescence stems; Abnormal SAM-D. Meinke-2002 137609,144345 Maternal effect embryo arrest 22 embryo development ending in seed dormancy [GO:0009793]; maintenance of meristem identity [GO:0010074]; meristem structural organization [GO:0009933]; negative regulation of DNA endoreduplication [GO:0032876] locus:2044677; AT2G34780 NA Os01g0768700 protein (Fragment) A0A0P0V8N6 A0A0P0V8N6_ORYSJ Os01g0768700 OSNPB_010768700 ENOG411E1PH CPK24 Q9SIQ7 CDPKO_ARATH Calcium-dependent protein kinase 24 (EC 2.7.11.1) FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 66244 Calcium-dependent protein kinase 24 (EC 2.7.11.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of inward rectifier potassium channel activity [GO:1901979]; regulation of pollen tube growth [GO:0080092] locus:2061290; AT2G31500 Calcium-dependent protein kinase NA NA NA NA NA NA NA ENOG411E1PI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kinesin-associated protein (KAP) NA NA NA NA NA NA NA ENOG411E1PF Q94CL2 Q94CL2_ARATH At5g12300 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Uncharacterized protein At5g12300) 42105 At5g12300 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Uncharacterized protein At5g12300) locus:505006598; AT5G12300 NA Os01g0953500 protein (cDNA clone:001-016-C08, full insert sequence) Q0JFY6 Q0JFY6_ORYSJ Os01g0953500 Os01g0953500 OSNPB_010953500 ENOG411E1PG P49063,Q9LVJ4 PGLR2_ARATH,Q9LVJ4_ARATH Exopolygalacturonase clone GBGA483 (ExoPG) (EC 3.2.1.67) (Galacturan 1,4-alpha-galacturonidase) (Pectinase),Pectin lyase-like superfamily protein (Polygalacturonase pectinase) FUNCTION: May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase. ARA:AT3G07850-MONOMER;,ARA:AT3G14040-MONOMER; 3.2.1.67 45600,45697 Exopolygalacturonase clone GBGA483 (ExoPG) (EC 3.2.1.67) (Galacturan 1,4-alpha-galacturonidase) (Pectinase),Pectin lyase-like superfamily protein (Polygalacturonase pectinase) cell wall [GO:0005618]; extracellular region [GO:0005576]; galacturan 1,4-alpha-galacturonidase activity [GO:0047911]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2077442;,locus:2088252; AT3G07850,AT3G14040 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411E1PD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sequence-specific DNA binding WUSCHEL-related homeobox 10 (OsWOX10) (Protein WOX11/12) Q6Z3L4 WOX10_ORYSJ WOX10 Os08g0242400 LOC_Os08g14400 OsJ_025487 OSJNBa0087F21.36 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411E1PE AT1G53040.1 Q0WNW2,A0A1P8AM90,A0A1P8AM59 Q0WNW2_ARATH,A0A1P8AM90_ARATH,A0A1P8AM59_ARATH Putative tRNA (Met) cytidine acetyltransferase (Uncharacterized protein At1g53040) (tRNA (Met) cytidine acetyltransferase, putative (DUF616)),tRNA (Met) cytidine acetyltransferase, putative (DUF616) 62175,56892,50110 Putative tRNA (Met) cytidine acetyltransferase (Uncharacterized protein At1g53040) (tRNA (Met) cytidine acetyltransferase, putative (DUF616)),tRNA (Met) cytidine acetyltransferase, putative (DUF616) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2037053; AT1G53040 Protein of unknown function (DUF616) NA NA NA NA NA NA NA ENOG411E1PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE domain Os12g0192300 protein A0A0P0Y804 A0A0P0Y804_ORYSJ Os12g0192300 OSNPB_120192300 ENOG411E1PC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os03g0321300 protein) (cDNA clone:J023081A12, full insert sequence) Q10M69 Q10M69_ORYSJ Os03g0321300 LOC_Os03g20500 Os03g0321300 OSNPB_030321300 ENOG411E1PA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain Sulfotransferase (EC 2.8.2.-),Sulfotransferase (EC 2.8.2.-) (Fragment) Q6ZJP3,Q2QU81,Q0INZ6,A0A0P0X929,A0A0N7KPK6,A0A0P0Y179,A0A0P0XSA8,A0A0N7KMX9,A0A0P0X2K9 Q6ZJP3_ORYSJ,Q2QU81_ORYSJ,Q0INZ6_ORYSJ,A0A0P0X929_ORYSJ,A0A0N7KPK6_ORYSJ,A0A0P0Y179_ORYSJ,A0A0P0XSA8_ORYSJ,A0A0N7KMX9_ORYSJ,A0A0P0X2K9_ORYSJ Os08g0240000 OJ1217_D10.26 OsJ_26542 OSNPB_080240000,Os12g0270900 LOC_Os12g17160 OSNPB_120270900,Os12g0270900 Os12g0270900 OSNPB_120270900,Os07g0606400 OSNPB_070606400,Os08g0277300 OSNPB_080277300,Os11g0260200 OSNPB_110260200,Os10g0190100 OSNPB_100190100,Os07g0148500 OSNPB_070148500,Os07g0148600 OSNPB_070148600 ENOG411EC8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBRR LRR-RLK Q9C9E4 Q9C9E4_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase; 33719-31696) 70793 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase; 33719-31696) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2193942; AT1G72460 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EBRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os08g0208700 protein (cDNA clone:J013168N22, full insert sequence),Os08g0217200 protein,Os07g0624100 protein (Fragment),Os05g0368800 protein,Os03g0822100 protein (Fragment),Os12g0521300 protein,Os01g0335900 protein,Os02g0459150 protein (Fragment),Os08g0446700 protein,Os05g0223100 protein B7EFH6,A0A0P0XD52,A0A0P0X8V2,A0A0P0WLF8,A0A0P0W561,A0A0P0YAL7,A0A0P0W511,A0A0P0V2M6,A0A0P0VIS7,A0A0P0XGC7,A0A0P0WJI7 B7EFH6_ORYSJ,A0A0P0XD52_ORYSJ,A0A0P0X8V2_ORYSJ,A0A0P0WLF8_ORYSJ,A0A0P0W561_ORYSJ,A0A0P0YAL7_ORYSJ,A0A0P0W511_ORYSJ,A0A0P0V2M6_ORYSJ,A0A0P0VIS7_ORYSJ,A0A0P0XGC7_ORYSJ,A0A0P0WJI7_ORYSJ Os08g0208700 OSNPB_080208700,Os08g0217200 OSNPB_080217200,Os07g0624100 OSNPB_070624100,Os05g0368800 OSNPB_050368800,Os03g0822100 OSNPB_030822100,Os12g0521300 OSNPB_120521300,Os01g0335900 OSNPB_010335900,Os02g0459150 OSNPB_020459150,Os08g0446700 OSNPB_080446700,Os05g0223100 OSNPB_050223100 ENOG411EBRP Q9LVE4,Q8VZM5 CSCL4_ARATH,CSCL3_ARATH CSC1-like protein At3g21620,CSC1-like protein At4g15430 FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. 86687,87167 CSC1-like protein At3g21620,CSC1-like protein At4g15430 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; ion transport [GO:0006811] locus:2089850;,locus:2130130; AT3G21620,AT4G15430 BEST Arabidopsis thaliana protein match is early-responsive to dehydration protein-related ERD protein-related (TAIR AT3G21620.1) NA NA NA NA NA NA NA ENOG411EBRW MVP1 Q7XA74,A0A1P8AW84 GDL21_ARATH,A0A1P8AW84_ARATH Inactive GDSL esterase/lipase-like protein 25 (GDSL-like lipase 25) (Myrosinase-associated protein GLL25) (Protein ENDOPLASMIC RETICULUM MORPHOLOGY 3) (Protein GOLGI DEFECTS 36) (Protein MODIFIED VACUOLE PHENOTYPE 1) (Protein NUCLEAR CAGE),GDSL-like Lipase/Acylhydrolase superfamily protein DISRUPTION PHENOTYPE: Defects in endoplasmic reticulum (ER) protein export and organizational defects in the ER, including aggregation of ER around the nucleus. Increased sensitivity to salt. {ECO:0000269|PubMed:19880612, ECO:0000269|PubMed:20626647, ECO:0000269|PubMed:23155454}. Abnormal vacuole morphology; Sensitive to salt; Susceptible to fungal infection-N. Raikhel-2009 FUNCTION: Involved in organization of the endomembrane system and is required for endoplasmic reticulum morphology and organelle distribution. May act by inhibiting the formation of PYK10 complex by binding to GLL23 and exporting it from the ER. Required for proper subcellular localization of myrosinase TGG2. Has no lipase or esterase activity. {ECO:0000269|PubMed:19880612, ECO:0000269|PubMed:20626647, ECO:0000269|PubMed:23155454, ECO:0000269|PubMed:24330158}. ARA:AT1G54030-MONOMER; 46083,34748 Inactive GDSL esterase/lipase-like protein 25 (GDSL-like lipase 25) (Myrosinase-associated protein GLL25) (Protein ENDOPLASMIC RETICULUM MORPHOLOGY 3) (Protein GOLGI DEFECTS 36) (Protein MODIFIED VACUOLE PHENOTYPE 1) (Protein NUCLEAR CAGE),GDSL-like Lipase/Acylhydrolase superfamily protein endoplasmic reticulum [GO:0005783]; ER body [GO:0010168]; plant-type vacuole membrane [GO:0009705]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; endoplasmic reticulum organization [GO:0007029]; intracellular protein transport [GO:0006886]; protein exit from endoplasmic reticulum [GO:0032527],hydrolase activity, acting on ester bonds [GO:0016788] DEVELOPMENTAL STAGE: Expressed during all developmental stages, with the highest accumulation in germinated seeds. {ECO:0000269|PubMed:19880612}. TISSUE SPECIFICITY: Expressed throughout the seedling, rosette leaves, roots, inflorescence and imbibed seed, but not in pollen. {ECO:0000269|PubMed:19880612}. locus:2014385; AT1G54030 GDSL-motif lipase NA NA NA NA NA NA NA ENOG411EBRV FLA12 Q8LEE9 FLA12_ARATH Fasciclin-like arabinogalactan protein 12 FUNCTION: May be a cell surface adhesion protein. 26367 Fasciclin-like arabinogalactan protein 12 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; plant-type secondary cell wall biogenesis [GO:0009834] locus:2175153; AT5G60490 Fasciclin domain NA NA NA NA NA NA NA ENOG411EBRU UXS5,UXS3,UXS6 Q9SN95,Q9FIE8,Q9ZV36,A0A1P8BFL8,F4IJL5,A0A1P8B345,A0A1P8BFI1,F4KHU8 UXS5_ARATH,UXS3_ARATH,UXS6_ARATH,A0A1P8BFL8_ARATH,F4IJL5_ARATH,A0A1P8B345_ARATH,A0A1P8BFI1_ARATH,F4KHU8_ARATH UDP-glucuronic acid decarboxylase 5 (EC 4.1.1.35) (UDP-XYL synthase 5) (UDP-glucuronate decarboxylase 5) (UGD) (UXS-5),UDP-glucuronic acid decarboxylase 3 (EC 4.1.1.35) (UDP-XYL synthase 3) (UDP-glucuronate decarboxylase 3) (UGD) (UXS-3),UDP-glucuronic acid decarboxylase 6 (EC 4.1.1.35) (UDP-XYL synthase 6) (UDP-glucuronate decarboxylase 6) (UGD) (UXS-6),UDP-glucuronic acid decarboxylase 3,UDP-D-glucuronate carboxy-lyase-like protein,UDP-XYL synthase 6 FUNCTION: Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. {ECO:0000269|PubMed:12481102, ECO:0000269|PubMed:16817893}. PATHWAY: Nucleotide-sugar biosynthesis; UDP-alpha-D-xylose biosynthesis; UDP-alpha-D-xylose from UDP-alpha-D-glucuronate: step 1/1. ARA:AT3G46440-MONOMER;,ARA:AT5G59290-MONOMER;MetaCyc:AT5G59290-MONOMER;,ARA:GQT-1877-MONOMER; 4.1.1.35 38389,38569,38621,37940,6706,42392,35430,40197 UDP-glucuronic acid decarboxylase 5 (EC 4.1.1.35) (UDP-XYL synthase 5) (UDP-glucuronate decarboxylase 5) (UGD) (UXS-5),UDP-glucuronic acid decarboxylase 3 (EC 4.1.1.35) (UDP-XYL synthase 3) (UDP-glucuronate decarboxylase 3) (UGD) (UXS-3),UDP-glucuronic acid decarboxylase 6 (EC 4.1.1.35) (UDP-XYL synthase 6) (UDP-glucuronate decarboxylase 6) (UGD) (UXS-6),UDP-glucuronic acid decarboxylase 3,UDP-D-glucuronate carboxy-lyase-like protein,UDP-XYL synthase 6 cytosol [GO:0005829]; NAD+ binding [GO:0070403]; UDP-glucuronate decarboxylase activity [GO:0048040]; D-xylose metabolic process [GO:0042732]; UDP-D-xylose biosynthetic process [GO:0033320],cytoplasm [GO:0005737]; NAD+ binding [GO:0070403]; UDP-glucuronate decarboxylase activity [GO:0048040]; UDP-D-xylose biosynthetic process [GO:0033320],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; NAD+ binding [GO:0070403]; UDP-glucuronate decarboxylase activity [GO:0048040]; D-xylose metabolic process [GO:0042732]; UDP-D-xylose biosynthetic process [GO:0033320],lyase activity [GO:0016829],cytosol [GO:0005829]; UDP-glucuronate decarboxylase activity [GO:0048040]; D-xylose metabolic process [GO:0042732] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12481102}. locus:2078206;,locus:2053275;,locus:2827733;,locus:2168539; AT3G46440,AT5G59290,AT2G28760,AT2G28755 udp-glucuronic acid decarboxylase NA NA NA NA NA NA NA ENOG411EBRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EBRZ AT1G24570.2 A0A1P8APV4,A0A1P8B1J7,F4IAS2 A0A1P8APV4_ARATH,A0A1P8B1J7_ARATH,F4IAS2_ARATH Transmembrane protein, putative (DUF707),Transmembrane protein 44854,26224,43991 Transmembrane protein, putative (DUF707),Transmembrane protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:504956279; AT1G24570 Protein of unknown function (DUF707) NA NA NA NA NA NA NA ENOG411EBRY Q9LU00 Q9LU00_ARATH At5g44650 (At5g44660) (Uncharacterized protein At5g44660) 46639 At5g44650 (At5g44660) (Uncharacterized protein At5g44660) locus:2152120; AT5G44660 NA NA NA NA NA NA NA NA ENOG411EBRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YABBY protein NA NA NA NA NA NA NA ENOG411EBRC Q9CA17,Q84K51 Q9CA17_ARATH,Q84K51_ARATH Forkhead box protein, putative (DUF1644) (Uncharacterized protein T32E8.10),At1g77770 (Forkhead box protein, putative (DUF1644)) (Uncharacterized protein At1g77770) 29968,29982 Forkhead box protein, putative (DUF1644) (Uncharacterized protein T32E8.10),At1g77770 (Forkhead box protein, putative (DUF1644)) (Uncharacterized protein At1g77770) locus:2203241; AT1G77770 Protein of unknown function (DUF1644) NA NA NA NA NA NA NA ENOG411EBRB O49305,A0A1P8AW70 O49305_ARATH,A0A1P8AW70_ARATH At1g23120 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (T26J12.11 protein) (Uncharacterized protein At1g23120/T26J12_11),Polyketide cyclase/dehydrase and lipid transport superfamily protein 17323,23337 At1g23120 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (T26J12.11 protein) (Uncharacterized protein At1g23120/T26J12_11),Polyketide cyclase/dehydrase and lipid transport superfamily protein defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2201200; AT1G23120 Major latex NA NA NA NA NA NA NA ENOG411EBRA RGXT3,RGXT2,RGXT1 Q9FXA7,Q9ZSJ0,Q9ZSJ2,A0A1P8B3C7,A0A1P8AVJ9 RGXT3_ARATH,RGXT2_ARATH,RGXT1_ARATH,A0A1P8B3C7_ARATH,A0A1P8AVJ9_ARATH UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 (EC 2.4.2.-) (Rhamnogalacturonan xylosyltransferase 3),UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase (EC 2.4.2.-) (Rhamnogalacturonan xylosyltransferase 2),UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1 (EC 2.4.2.-) (Rhamnogalacturonan xylosyltransferase 1),Glycosyltransferase (EC 2.4.2.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17056709}. No visible phenotype. FUNCTION: Catalyzes the transfer of D-xylose from UDP-alpha-D-xylose onto L-fucose. Probably involved in the biosynthesis of rhamnogalacturonan II (RG-II) through xylosylation of the internal fucose moiety of the A-chain of RG-II, a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues such as roots and pollen tube growth and elongation. {ECO:0000269|PubMed:18755189}.,FUNCTION: Catalyzes the transfer of D-xylose from UDP-alpha-D-xylose onto L-fucose. Probably involved in the biosynthesis of rhamnogalacturonan II (RG-II) through xylosylation of the internal fucose moiety of the A-chain of RG-II, a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues such as roots and pollen tube growth and elongation. {ECO:0000269|PubMed:17056709, ECO:0000269|PubMed:19455420}. 2.4.2.- 43910,41799,41174,41456,41909 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 (EC 2.4.2.-) (Rhamnogalacturonan xylosyltransferase 3),UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase (EC 2.4.2.-) (Rhamnogalacturonan xylosyltransferase 2),UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1 (EC 2.4.2.-) (Rhamnogalacturonan xylosyltransferase 1),Glycosyltransferase (EC 2.4.2.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; UDP-xylosyltransferase activity [GO:0035252]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; UDP-xylosyltransferase activity [GO:0035252]; rhamnogalacturonan II biosynthetic process [GO:0010306],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed around trichome support cells in the adaxial epidermis of rosette leaves, in cauline leaves, petals and both the proximal and distal ends of siliques. {ECO:0000269|PubMed:18755189}.,TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems and flowers. {ECO:0000269|PubMed:17056709}.,TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17056709}. locus:2027605;,locus:2133457;,locus:2133392; AT1G56550,AT4G01750,AT4G01770 Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EBRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411EBRF SULTR3;2 O04289 SUT32_ARATH Sulfate transporter 3.2 (AST77) Small rosette leaves; Early flowering; Slightly elevated sulfate levels in seeds-K. Gallardo-2010 FUNCTION: H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation. R-ATH-174362;R-ATH-427601; 71270 Sulfate transporter 3.2 (AST77) chloroplast [GO:0009507]; integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293] TISSUE SPECIFICITY: Expressed only in leaves. locus:2132333; AT4G02700 STAS domain NA NA NA NA NA NA NA ENOG411EBRE NEAP1 Q9M9L3,F4J8J0 NEAP1_ARATH,F4J8J0_ARATH Nuclear envelope-associated protein 1 (AtNEAP1) (Plant IF-like protein),Spindle pole body component-like protein DISRUPTION PHENOTYPE: Double mutants NEAP1-NEAP3 display reduced primary root growth, and altered nuclear morphology and chromatin structure. {ECO:0000269|PubMed:27630107}. 39578,41049 Nuclear envelope-associated protein 1 (AtNEAP1) (Plant IF-like protein),Spindle pole body component-like protein nuclear envelope [GO:0005635]; nucleoplasm [GO:0005654] locus:2074449; AT3G05830 NA NA NA NA NA NA NA NA ENOG411EBRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ubiquitin carboxyl-terminal hydrolase Os12g0489200 protein (Fragment) A0A0P0YA40 A0A0P0YA40_ORYSJ Os12g0489200 OSNPB_120489200 ENOG411EBRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os04g0395100 protein (Fragment) Q0JDL7 Q0JDL7_ORYSJ Os04g0395100 Os04g0395100 OSNPB_040395100 ENOG411EBRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EBRH MES20,MES9,MEE69 F4JRA6,O23171,A0A1P8B6T5 MES20_ARATH,MES9_ARATH,A0A1P8B6T5_ARATH Putative inactive methylesterase 20 (AtMES20) (Protein MATERNAL EFFECT EMBRYO ARREST 69),Methylesterase 9 (AtMES9) (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein FUNCTION: Methylesterase shown to have carboxylesterase activity, methyl indole-3-acetic acid (MeIAA) esterase activity, methyl salicylate (MeSA) esterase activity and methyl jasmonate (MeJA) esterase activity in vitro. Required to convert methyl salicylate (MeSA) to salicylic acid (SA) as part of the signal transduction pathways that activate systemic acquired resistance in systemic tissue. MeSA is believed to be an inactive form that needs to be demethylated to exert a biological effect. {ECO:0000269|PubMed:18467465, ECO:0000269|PubMed:18643994}. MISCELLANEOUS: Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. ARA:AT4G37150-MONOMER; 3.1.1.- 14873,28744,10840 Putative inactive methylesterase 20 (AtMES20) (Protein MATERNAL EFFECT EMBRYO ARREST 69),Methylesterase 9 (AtMES9) (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787]; embryo development ending in seed dormancy [GO:0009793],hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl jasmonate esterase activity [GO:0080032]; methyl salicylate esterase activity [GO:0080031]; defense response to fungus, incompatible interaction [GO:0009817]; jasmonic acid metabolic process [GO:0009694]; salicylic acid metabolic process [GO:0009696]; systemic acquired resistance [GO:0009627],hydrolase activity [GO:0016787] locus:2115025;,locus:2114985; AT4G37140,AT4G37150 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EBRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EBRM T21J18_70,MQM1.5 Q9M303,Q9LSZ8 Q9M303_ARATH,Q9LSZ8_ARATH Sterile alpha motif (SAM) domain-containing protein (Uncharacterized protein T21J18_70),At5g23680 (Similarity to unknown protein) (Sterile alpha motif (SAM) domain-containing protein) 30510,32553 Sterile alpha motif (SAM) domain-containing protein (Uncharacterized protein T21J18_70),At5g23680 (Similarity to unknown protein) (Sterile alpha motif (SAM) domain-containing protein) locus:2099448;,locus:2171741; AT3G48800,AT5G23680 sterile alpha motif NA NA NA NA NA NA NA ENOG411EBR3 GT13 O48843 GT13_ARATH Probable xyloglucan galactosyltransferase GT13 (EC 2.4.1.-) (Glycosyltransferase 13) (AtGT13) FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 54837 Probable xyloglucan galactosyltransferase GT13 (EC 2.4.1.-) (Glycosyltransferase 13) (AtGT13) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, stems, petals and carpels. {ECO:0000269|PubMed:15020758}. locus:2046387; AT2G32740 Exostosin family NA NA NA NA NA NA NA ENOG411EBR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBR1 NAC066 Q9M274 NAC66_ARATH NAC domain-containing protein 66 (ANAC066) (Protein NAC SECONDARY WALL THICKENING PROMOTING FACTOR 2) FUNCTION: Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}. 37862 NAC domain-containing protein 66 (ANAC066) (Protein NAC SECONDARY WALL THICKENING PROMOTING FACTOR 2) membrane [GO:0016020]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in anthers. Also present in pollen, base of siliques and inflorescence stems. {ECO:0000269|PubMed:16214898}. locus:2079562; AT3G61910 NAC domain protein 66 NA NA NA NA NA NA NA ENOG411EBR0 GLP6,GLP2A,GLP5A,GER2 Q9FIC9,Q9FIC6,Q9FID0,Q9FIC8,Q9FL89,P92997,P92999,P92996,Q9SFF9,F4KD18,F4KD16,B3H5Q0 GL115_ARATH,GL117_ARATH,GL114_ARATH,GL116_ARATH,GL119_ARATH,GL113_ARATH,GL118_ARATH,GL120_ARATH,GL17_ARATH,F4KD18_ARATH,F4KD16_ARATH,B3H5Q0_ARATH Germin-like protein subfamily 1 member 15,Germin-like protein subfamily 1 member 17,Germin-like protein subfamily 1 member 14,Germin-like protein subfamily 1 member 16,Germin-like protein subfamily 1 member 19,Germin-like protein subfamily 1 member 13,Germin-like protein subfamily 1 member 18 (GLP2a copy 1),Germin-like protein subfamily 1 member 20 (GLP2a copy 2) (GLP2b) (Germin type 2) (At-GERM2) (AtGER2),Germin-like protein subfamily 1 member 7,RmlC-like cupins superfamily protein,Germin-like protein 2 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 23866,23733,23913,24010,23745,24095,23958,23925,24736,23443,21353,21320 Germin-like protein subfamily 1 member 15,Germin-like protein subfamily 1 member 17,Germin-like protein subfamily 1 member 14,Germin-like protein subfamily 1 member 16,Germin-like protein subfamily 1 member 19,Germin-like protein subfamily 1 member 13,Germin-like protein subfamily 1 member 18 (GLP2a copy 1),Germin-like protein subfamily 1 member 20 (GLP2a copy 2) (GLP2b) (Germin type 2) (At-GERM2) (AtGER2),Germin-like protein subfamily 1 member 7,RmlC-like cupins superfamily protein,Germin-like protein 2 apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735],apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular matrix [GO:0031012]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735],extracellular region [GO:0005576]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] TISSUE SPECIFICITY: Expressed in stems and developing embryos. locus:2177157;,locus:2177187;,locus:2177147;,locus:2177167;,locus:2157220;,locus:2157200;,locus:2157230;,locus:2074514; AT5G39120,AT5G39150,AT5G39110,AT5G39130,AT5G39180,AT5G39100,AT5G39160,AT5G39190,AT3G05950 Cupin domain NA NA NA NA NA NA NA ENOG411EBR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os09g0374500 protein,Os09g0373400 protein,Os05g0303700 protein Q6H4G9,A0A0P0XMG9,A0A0P0WKE3 Q6H4G9_ORYSJ,A0A0P0XMG9_ORYSJ,A0A0P0WKE3_ORYSJ Os09g0374500 OsJ_29146 OSNPB_090374500 P0599F09.43,Os09g0373400 OSNPB_090373400,Os05g0303700 OSNPB_050303700 ENOG411EBR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411EBR5 Q9LK31 Y3272_ARATH Kelch repeat-containing protein At3g27220 48496 Kelch repeat-containing protein At3g27220 cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; SCF ubiquitin ligase complex [GO:0019005]; trans-Golgi network [GO:0005802]; ubiquitin protein ligase binding [GO:0031625]; anaerobic respiration [GO:0009061]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2086528; AT3G27220 Kelch repeat-containing protein NA NA NA NA NA NA NA ENOG411EBR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-phosphate dependent enzyme NA NA NA NA NA NA NA ENOG411EBR9 Q9FK14,Q9FK15 LEA50_ARATH,LEA49_ARATH Late embryogenesis abundant protein 50 (LEA 50),Late embryogenesis abundant protein 49 (LEA 49) FUNCTION: LEA proteins are late embryonic proteins abundant in higher plant seed embryos. The function of those proteins is not known. {ECO:0000305}. 16661,18272 Late embryogenesis abundant protein 50 (LEA 50),Late embryogenesis abundant protein 49 (LEA 49) cytosol [GO:0005829]; nucleus [GO:0005634] locus:2154252;,locus:2154242; AT5G53270,AT5G53260 seed maturation NA NA NA NA NA NA NA ENOG411EBR8 MYB110 Q9FYX6,F4J1R5 Q9FYX6_ARATH,F4J1R5_ARATH Myb domain protein 110 (Putative transcription factor),Myb domain protein 110 27613,35289 Myb domain protein 110 (Putative transcription factor),Myb domain protein 110 DNA binding [GO:0003677],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355] locus:2087017; AT3G29020 myb domain protein 110 NA NA NA NA NA NA NA ENOG411DXVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os02g0781800 protein (Fragment) A0A0P0VQ88 A0A0P0VQ88_ORYSJ Os02g0781800 OSNPB_020781800 ENOG411EC8W VSR2 O22925,F4IMR9 VSR2_ARATH,F4IMR9_ARATH Vacuolar-sorting receptor 2 (AtVSR2) (BP80-like protein c) (AtBP80c) (Epidermal growth factor receptor-like protein 4) (AtELP4),VACUOLAR SORTING RECEPTOR 2 FUNCTION: Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. {ECO:0000250}. 69875,71746 Vacuolar-sorting receptor 2 (AtVSR2) (BP80-like protein c) (AtBP80c) (Epidermal growth factor receptor-like protein 4) (AtELP4),VACUOLAR SORTING RECEPTOR 2 clathrin-coated vesicle membrane [GO:0030665]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; calcium ion binding [GO:0005509]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509] TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:12493849}. locus:2065724; AT2G30290 PA domain NA NA NA NA NA NA NA ENOG411DXVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0216400 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J033032L21, full insert sequence) Q69TH1 Q69TH1_ORYSJ Os06g0216400 Os06g0216400 OsJ_20596 OSJNBb0024N18.14 OSNPB_060216400 P0537F07.36 ENOG411DWD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0152300 protein (Putative serine threonine kinase) (cDNA clone:J023014P05, full insert sequence) Q67UV9 Q67UV9_ORYSJ Os02g0152300 OSJNBa0050G13.32 OSNPB_020152300 ENOG411EGA9 F25C20.8 Q9SAA0,B3H5T5,F4HWK0 Q9SAA0_ARATH,B3H5T5_ARATH,F4HWK0_ARATH At1g11763 (F25C20.8) (Plant self-incompatibility protein S1 family),Plant self-incompatibility protein S1 family 16188,16176,16305 At1g11763 (F25C20.8) (Plant self-incompatibility protein S1 family),Plant self-incompatibility protein S1 family locus:1005716751;,locus:4515102605;,locus:4010713481; AT1G11765,AT1G28306,AT1G28305 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EGA8 MTI20.6 Q9FJN2 Q9FJN2_ARATH Zinc ion binding protein 17978 Zinc ion binding protein locus:2174393; AT5G57820 Inherit from KOG: -phosphatase NA NA NA NA NA NA NA ENOG411EGA7 MHF15.10 Q9FNH0 Q9FNH0_ARATH Gb|AAF02136.1 16065 Gb|AAF02136.1 locus:2164275; AT5G06380 NA NA NA NA NA NA NA NA ENOG411EGA6 SOFL1 Q67YG7 Q67YG7_ARATH At1g26210 (SOB five-like 1) (Uncharacterized protein At1g26210) 16249 At1g26210 (SOB five-like 1) (Uncharacterized protein At1g26210) cytokinin metabolic process [GO:0009690] locus:2028792; AT1G26210 NA NA NA NA NA NA NA NA ENOG411EGA4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ty1-copia subclass NA NA NA NA NA NA NA ENOG411EGAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGAJ F25I24.230 Q9SN53,Q9T0A2 Q9SN53_ARATH,Q9T0A2_ARATH Uncharacterized protein AT4g11020 (Uncharacterized protein F25I24.230),Uncharacterized protein AT4g23870 (Uncharacterized protein At4g23870; T32A16.40) 18256,13432 Uncharacterized protein AT4g11020 (Uncharacterized protein F25I24.230),Uncharacterized protein AT4g23870 (Uncharacterized protein At4g23870; T32A16.40) locus:2123436;,locus:2138161; AT4G11020,AT4G23870 NA NA NA NA NA NA NA NA ENOG411EGAI O49324,Q1PEX4,F4IUQ8 O49324_ARATH,Q1PEX4_ARATH,F4IUQ8_ARATH Transcription elongation factor (TFIIS) family protein (Uncharacterized protein At2g33090),Transcription elongation factor (TFIIS) family protein 28062,31119,28165 Transcription elongation factor (TFIIS) family protein (Uncharacterized protein At2g33090),Transcription elongation factor (TFIIS) family protein nucleus [GO:0005634]; translation elongation factor activity [GO:0003746] locus:2046520;,locus:2051139;,locus:2046442; AT2G33090,AT2G33300,AT2G32820 Transcription elongation factor (TFIIS) NA NA NA NA NA NA NA ENOG411EGAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF501) NA NA NA NA NA NA NA ENOG411EGAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0723700 protein A0A0P0W328 A0A0P0W328_ORYSJ Os03g0723700 OSNPB_030723700 ENOG411EGAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EGAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BowB NA NA NA NA NA NA NA ENOG411EGAA GASA7 O82328 GASA7_ARATH Gibberellin-regulated protein 7 (GAST1 protein homolog 7) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 11381 Gibberellin-regulated protein 7 (GAST1 protein homolog 7) extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740] locus:2060485; AT2G14900 Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411EGAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CTNS NA NA NA NA NA NA NA ENOG411EGAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0515000 protein A0A0N7KJD0 A0A0N7KJD0_ORYSJ Os04g0515000 OSNPB_040515000 ENOG411EGAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA at3g58940 (e NA NA NA NA NA NA NA ENOG411EGAW F3N23.33 A0A1P8AQL4,Q9S781 A0A1P8AQL4_ARATH,Q9S781_ARATH Mucin,F3N23.33 protein (Mucin) (Uncharacterized protein At1g73130) (Uncharacterized protein T18K17.21) 65825,71068 Mucin,F3N23.33 protein (Mucin) (Uncharacterized protein At1g73130) (Uncharacterized protein T18K17.21) locus:2032657; AT1G73130 NA NA NA NA NA NA NA NA ENOG411EGAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0041 Mitochondrial pyruvate carrier Q6ZB58 Q6ZB58_ORYSJ Os08g0344300 OJ1119_B10.31 OSNPB_080344300 FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000256|RuleBase:RU363100}. ENOG411EGAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EGAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beta-galactosidase NA NA NA NA NA NA NA ENOG411EE9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Aquaporin NIP1-2 (NOD26-like intrinsic protein 1-2) (OsNIP1;2),Os01g0202800 protein Q0JPT5,A0A0P0UZN2 NIP12_ORYSJ,A0A0P0UZN2_ORYSJ NIP1-2 Os01g0202800 Os01g0202900 LOC_Os01g10600 OsJ_000763 P0489A05.30,Os01g0202800 OSNPB_010202800 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411EE9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NA NA NA NA NA NA NA ENOG411EE9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3'5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) NA NA NA NA NA NA NA ENOG411EE9G Q9SRX1,Q9SGP8,Q9LR97,Q9C6N2,Q94A88,Q9LMC2,Q9LH42,Q8RXM6,A0A1I9LTD3,A0A1I9LTD4,F4I7Q0 Y1277_ARATH,Y1285_ARATH,Y1239_ARATH,Y1278_ARATH,Y1397_ARATH,Y1196_ARATH,Y3195_ARATH,Y1396_ARATH,A0A1I9LTD3_ARATH,A0A1I9LTD4_ARATH,F4I7Q0_ARATH UPF0725 protein At1g02770,Putative UPF0725 protein At1g28500,UPF0725 protein At1g23950,UPF0725 protein At1g27860,UPF0725 protein At1g23970,UPF0725 protein At1g19060,UPF0725 protein At3g19520,UPF0725 protein At1g23960,Uncharacterized protein 36066,37516,41825,33339,42748,32727,35948,34825,37221,26048,42220 UPF0725 protein At1g02770,Putative UPF0725 protein At1g28500,UPF0725 protein At1g23950,UPF0725 protein At1g27860,UPF0725 protein At1g23970,UPF0725 protein At1g19060,UPF0725 protein At3g19520,UPF0725 protein At1g23960,Uncharacterized protein locus:2024705;,locus:2032559;,locus:2199867;,locus:2029846;,locus:2199887;,locus:2011301;,locus:2101530;,locus:2199877; AT1G02770,AT1G28500,AT1G23950,AT1G27860,AT1G23970,AT1G19060,AT3G19520,AT1G23960 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EE9F PXMT1 Q9C9M2,Q9C9M4,Q9C9M3 PXMT2_ARATH,PXMT3_ARATH,PXMT1_ARATH Paraxanthine methyltransferase 2 (EC 2.1.1.-) (SABATH methyltransferase PXMT2),Paraxanthine methyltransferase 3 (EC 2.1.1.-) (SABATH methyltransferase PXMT3),Paraxanthine methyltransferase 1 (EC 2.1.1.-) (SABATH methyltransferase PXMT1) FUNCTION: Methyltransferase that may methylate 1,7-paraxanthine (PubMed:26768601). Prevents seed germination and modulates root architecture during early seedlings development (PubMed:26768601). Plays a minor role in defense responses toward pathogenic bacteria (e.g. P.syringae) (PubMed:28401908). {ECO:0000269|PubMed:26768601, ECO:0000269|PubMed:28401908, ECO:0000303|PubMed:26768601}. ARA:AT1G66690-MONOMER;,ARA:AT1G66720-MONOMER;,ARA:AT1G66700-MONOMER; 2.1.1.- 39923,39290,39780 Paraxanthine methyltransferase 2 (EC 2.1.1.-) (SABATH methyltransferase PXMT2),Paraxanthine methyltransferase 3 (EC 2.1.1.-) (SABATH methyltransferase PXMT3),Paraxanthine methyltransferase 1 (EC 2.1.1.-) (SABATH methyltransferase PXMT1) metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168]; response to herbivore [GO:0080027],metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168],metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168]; defense response to bacterium [GO:0042742]; gene silencing by miRNA [GO:0035195]; multicellular organism development [GO:0007275]; regulation of root development [GO:2000280]; regulation of seed germination [GO:0010029]; regulation of seedling development [GO:1900140]; response to bacterium [GO:0009617]; response to herbivore [GO:0080027]; response to light stimulus [GO:0009416]; response to molecule of fungal origin [GO:0002238]; response to salicylic acid [GO:0009751] DEVELOPMENTAL STAGE: During seed germination, predominantly expressed in the radicle and, to a lower extent, in hypocotyls. {ECO:0000269|PubMed:26768601}. locus:2033414;,locus:2033389;,locus:2033409; AT1G66690,AT1G66720,AT1G66700 SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EE9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sensory histidine protein kinase NA NA NA NA NA NA NA ENOG411EE9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os11g0132800 protein,Os12g0131750 protein A0A0N7KSD8,A0A0P0Y6K6 A0A0N7KSD8_ORYSJ,A0A0P0Y6K6_ORYSJ Os11g0132800 OSNPB_110132800,Os12g0131750 OSNPB_120131750 ENOG411EE9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ligand-gated ion channel NA NA NA NA NA NA NA ENOG411EE9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thiamine pyrophosphate enzyme central domain NA NA NA NA NA NA NA ENOG411EE9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EE9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EE9Q UGT71C2,UGT71C3,UGT71C1 O82382,Q9LML7,O82381 U71C2_ARATH,U71C3_ARATH,U71C1_ARATH UDP-glycosyltransferase 71C2 (EC 2.4.1.-),UDP-glycosyltransferase 71C3 (EC 2.4.1.-),UDP-glycosyltransferase 71C1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71C1) (EC 2.4.1.91) (Flavonol 7-O-glucosyltransferase UGT71C1) FUNCTION: Possesses low quercetin 3-O-glucosyltransferase, 7-O-glucosyltransferase and 3'-O-glucosyltransferase activities in vitro. Glucosylates other secondary metabolites in vitro like vanillin, trans-resveratrol, curumin and etoposide. {ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:19261311}.,FUNCTION: Possesses low quercetin 3-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}.,FUNCTION: Possesses quercetin 7-O-glucosyltransferase and 3'-O-glucosyltransferase activities in vitro. Also active in vitro on benzoates and benzoate derivatives. Glucosylates other secondary metabolites in vitro like trans-resveratrol, curcumin, vanillin and etoposide. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:19261311}. 2.4.1.128; 2.4.1.-,2.4.1.-; 2.4.1.91 53185,52901,53875 UDP-glycosyltransferase 71C2 (EC 2.4.1.-),UDP-glycosyltransferase 71C3 (EC 2.4.1.-),UDP-glycosyltransferase 71C1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71C1) (EC 2.4.1.91) (Flavonol 7-O-glucosyltransferase UGT71C1) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3'-O-glucosyltransferase activity [GO:0080045]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3'-O-glucosyltransferase activity [GO:0080045]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152] locus:2060664;,locus:2007452;,locus:2060654; AT2G29740,AT1G07260,AT2G29750 UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EE9P PER36 Q9SD46 PER36_ARATH Peroxidase 36 (Atperox P36) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT3G50990-MONOMER; 1.11.1.7 38237 Peroxidase 36 (Atperox P36) (EC 1.11.1.7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; cell wall polysaccharide catabolic process [GO:0044347]; hydrogen peroxide catabolic process [GO:0042744]; mucilage extrusion from seed coat [GO:0080001]; response to oxidative stress [GO:0006979] locus:2080928; AT3G50990 Peroxidase NA NA NA NA NA NA NA ENOG411EE9S CLPS5,MYH19.80 Q9FLE2,F4KFW6 CLP5_ARATH,F4KFW6_ARATH Protein CLP1 homolog 5 (CLP-like protein 5) (Protein CLP-SIMILAR PROTEIN 5),Pre-mRNA cleavage complex II protein FUNCTION: Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation. {ECO:0000255|HAMAP-Rule:MF_03035}. R-ATH-72163; 47489,11412 Protein CLP1 homolog 5 (CLP-like protein 5) (Protein CLP-SIMILAR PROTEIN 5),Pre-mRNA cleavage complex II protein mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]; ATP binding [GO:0005524]; polynucleotide 5'-hydroxyl-kinase activity [GO:0051731]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388],mRNA 3'-end processing [GO:0031124] locus:2178072;,locus:2178062; AT5G39930,AT5G39920 Pre-mRNA cleavage complex II protein Clp1 NA NA NA NA NA NA NA ENOG411EE9R Q5BPJ9 Q5BPJ9_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 33524 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family integral component of membrane [GO:0016021] locus:2132811; AT4G35170 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EE9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp70 protein Os06g0212900 protein (Putative dnaK-type molecular chaperone BiP) (S5-3) (cDNA clone:001-022-H03, full insert sequence) (cDNA clone:J023101M15, full insert sequence),Os05g0591400 protein Q69TV0,Q6L4S6 Q69TV0_ORYSJ,Q6L4S6_ORYSJ Os06g0212900 OSNPB_060212900 P0021C04.49 P0701E03.26,Os05g0591400 OSJNBa0022J22.16 OSNPB_050591400 P0663C08.2 ENOG411EE9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os06g0324150 protein,Os06g0324300 protein (Fragment) C7J3K3,A0A0P0WWG1 C7J3K3_ORYSJ,A0A0P0WWG1_ORYSJ Os06g0324150 Os06g0324150 OSNPB_060324150,Os06g0324300 OSNPB_060324300 ENOG411EE9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EE9Y Q8L705 Q8L705_ARATH At2g20720 (Pentatricopeptide repeat (PPR) superfamily protein) (Uncharacterized protein At2g20720) 34487 At2g20720 (Pentatricopeptide repeat (PPR) superfamily protein) (Uncharacterized protein At2g20720) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2051374; AT2G20720 Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411EE9X Q29PX7,A0A1P8APG5 Q29PX7_ARATH,A0A1P8APG5_ARATH At1g19540 (NmrA-like negative transcriptional regulator family protein),NmrA-like negative transcriptional regulator family protein ARA:AT1G19540-MONOMER; 34366,28760 At1g19540 (NmrA-like negative transcriptional regulator family protein),NmrA-like negative transcriptional regulator family protein locus:2016482; AT1G19540 NmrA-like family NA NA NA NA NA NA NA ENOG411EE9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EE91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os03g0126450 protein (Fragment) A0A0P0VSJ1 A0A0P0VSJ1_ORYSJ Os03g0126450 OSNPB_030126450 ENOG411EE90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0450500 protein) (cDNA clone:J013158F09, full insert sequence) Q2QRT3 Q2QRT3_ORYSJ Os12g0450500 LOC_Os12g26480 OsJ_35997 OSNPB_120450500 ENOG411EE93 O65430,A0A1P8B5T0,A0A1P8B5U1,F4KAC4 O65430_ARATH,A0A1P8B5T0_ARATH,A0A1P8B5U1_ARATH,F4KAC4_ARATH Glu-rich protein (Golgin family A protein),Golgin family A protein,RING finger PFF0165c-like protein 134510,137070,136810,76111 Glu-rich protein (Golgin family A protein),Golgin family A protein,RING finger PFF0165c-like protein chloroplast [GO:0009507]; cytoplasm [GO:0005737]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:2120377;,locus:2156339; AT4G20160,AT5G44690 Inherit from euNOG: protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411EE92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411EE95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase NA NA NA NA NA NA NA ENOG411EE94 Q3E938 Q3E938_ARATH Uncharacterized protein 20185 Uncharacterized protein locus:2180622; AT5G26100 NA NA NA NA NA NA NA NA ENOG411EE97 XTH11 Q9SMP1,A0A1I9LNY6,F4JF30 XTH11_ARATH,A0A1I9LNY6_ARATH,F4JF30_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 11 (At-XTH11) (XTH-11) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) FUNCTION: May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ARA:AT3G48580-MONOMER; 2.4.1.207 31939,25465,29486 Probable xyloglucan endotransglucosylase/hydrolase protein 11 (At-XTH11) (XTH-11) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall organization [GO:0071555]; cellular glucan metabolic process [GO:0006073] locus:2114545; AT3G48580 Xyloglucan xyloglucosyl transferase NA NA NA NA NA NA NA ENOG411EE96 MTH12.3 Q58FT1 Q58FT1_ARATH Uncharacterized protein 26180 Uncharacterized protein locus:2174309; AT5G59760 Protein of unknown function (DUF1635) NA NA NA NA NA NA NA ENOG411EE99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EE98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os05g0248901 protein,Os05g0248600 protein,Os05g0251200 protein,Os05g0249800 protein (Fragment) A0A0P0WJR7,A0A0P0WJV4,A0A0P0WJW8,A0A0P0WJU2 A0A0P0WJR7_ORYSJ,A0A0P0WJV4_ORYSJ,A0A0P0WJW8_ORYSJ,A0A0P0WJU2_ORYSJ Os05g0248901 OSNPB_050248901,Os05g0248600 OSNPB_050248600,Os05g0251200 OSNPB_050251200,Os05g0249800 OSNPB_050249800 ENOG411EG4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411EG4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family OSJNBa0010H02.24 protein (Os04g0554800 protein) (cDNA, clone: J075130A11, full insert sequence) Q7XT29 Q7XT29_ORYSJ Os04g0554800 Os04g0554800 OsJ_15726 OSJNBa0010H02.24 OSNPB_040554800 ENOG411EJWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane proteins 14C NA NA NA NA NA NA NA ENOG411DPN9 GPAT4,GPAT8 Q9LMM0,Q5XF03 GPAT4_ARATH,GPAT8_ARATH Glycerol-3-phosphate 2-O-acyltransferase 4 (AtGPAT4) (EC 2.3.1.198) (Glycerol-3-phosphate acyltransferase 4),Probable glycerol-3-phosphate acyltransferase 8 (EC 2.3.1.15) This double knock-out mutant has a 60-70% overall decrease in cutin monomer content in leaf and stem. The plant grew slowly. The water loss rate for rosettes was 4-fold greater than wild type. The mutant has an increased sensitivity to fungal pathogen. Defects in stomata structure. FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-2 position of glycerol-3-phosphate, a step in cutin biosynthesis. {ECO:0000269|PubMed:20551224}.,FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate, an essential step in glycerolipid biosynthesis. {ECO:0000250}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 1/3. MetaCyc:AT4G00400-MONOMER; 2.3.1.198;3.1.3.B13;,2.3.1.15; 2.3.1.198,2.3.1.15 56262,55867 Glycerol-3-phosphate 2-O-acyltransferase 4 (AtGPAT4) (EC 2.3.1.198) (Glycerol-3-phosphate acyltransferase 4),Probable glycerol-3-phosphate acyltransferase 8 (EC 2.3.1.15) integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; phosphatase activity [GO:0016791]; sn-2-glycerol-3-phosphate omega-OH-C22:0-CoA acyl transferase activity [GO:0102419]; cutin biosynthetic process [GO:0010143]; phospholipid biosynthetic process [GO:0008654],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; glycerol-3-phosphate O-acyltransferase activity [GO:0004366]; phosphatase activity [GO:0016791]; sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity [GO:0102420]; CDP-diacylglycerol biosynthetic process [GO:0016024]; cutin biosynthetic process [GO:0010143] TISSUE SPECIFICITY: Widely expressed at high level. Highly expressed in seedlings, developing seedlings and flower buds. {ECO:0000269|PubMed:12897259}. locus:2025381;,locus:2126101; AT1G01610,AT4G00400 glycerol-3-phosphate acyltransferase NA NA NA NA NA NA NA ENOG411DPNW PRXIIF Q9M7T0,A0A1I9LRF4 PRX2F_ARATH,A0A1I9LRF4_ARATH Peroxiredoxin-2F, mitochondrial (EC 1.11.1.15) (Peroxiredoxin IIF) (Thioredoxin peroxidase 2F),Peroxiredoxin IIF FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. Reduces preferentially hydrogen peroxide rather than alkyl peroxides. May be involved in mitochondrial redox homeostasis. {ECO:0000269|PubMed:15632145}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. C(P) can be reactivated by glutathione or the mitochondrial glutaredoxin (Grx) or thioredoxin (Trx) systems. {ECO:0000305|PubMed:15632145}. ARA:AT3G06050-MONOMER; 1.11.1.15 21445,19968 Peroxiredoxin-2F, mitochondrial (EC 1.11.1.15) (Peroxiredoxin IIF) (Thioredoxin peroxidase 2F),Peroxiredoxin IIF mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979],cell [GO:0005623]; oxidoreductase activity [GO:0016491]; cell redox homeostasis [GO:0045454] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:12913160, ECO:0000269|Ref.7}. locus:2080374; AT3G06050 peroxiredoxin activity Peroxiredoxin-2F, mitochondrial (EC 1.11.1.15) (Peroxiredoxin IIF) (Thioredoxin peroxidase 2F) Q9SDD6 PRX2F_ORYSJ PRXIIF Os01g0266600 LOC_Os01g16152 P0011D01.6 P0499C11.34 FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. Reduces preferentially hydrogen peroxide rather than alkyl peroxides. May be involved in mitochondrial redox homeostasis. {ECO:0000250|UniProtKB:Q9M7T0}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. C(P) can be reactivated by glutathione or the mitochondrial glutaredoxin (Grx) or thioredoxin (Trx) systems. {ECO:0000250|UniProtKB:Q9M7T0}. ENOG411DTEG ROPGEF2,ROPGEF3 Q9LQ89,A4IJ27,A0A1P8ASC5,A0A1P8B3X4,A0A1P8ASA3,A0A1P8ASE8,B3H471 ROGF2_ARATH,ROGF3_ARATH,A0A1P8ASC5_ARATH,A0A1P8B3X4_ARATH,A0A1P8ASA3_ARATH,A0A1P8ASE8_ARATH,B3H471_ARATH Rop guanine nucleotide exchange factor 2 (AtRopGEF2) (Rho of plants guanine nucleotide exchange factor 2),Rop guanine nucleotide exchange factor 3 (AtRopGEF3) (Rho of plants guanine nucleotide exchange factor 3),RHO guanyl-nucleotide exchange factor 2,RHO guanyl-nucleotide exchange factor 3 FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. {ECO:0000269|PubMed:15980860}.,FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. {ECO:0000250}. 54699,53533,41892,39040,58043,52121,38055 Rop guanine nucleotide exchange factor 2 (AtRopGEF2) (Rho of plants guanine nucleotide exchange factor 2),Rop guanine nucleotide exchange factor 3 (AtRopGEF3) (Rho of plants guanine nucleotide exchange factor 3),RHO guanyl-nucleotide exchange factor 2,RHO guanyl-nucleotide exchange factor 3 Rho guanyl-nucleotide exchange factor activity [GO:0005089],integral component of membrane [GO:0016021]; Rho guanyl-nucleotide exchange factor activity [GO:0005089] TISSUE SPECIFICITY: Expressed in the vascular tissues of roots, leaves, sepals, petals and siliques. {ECO:0000269|PubMed:22500990}. locus:2198220;,locus:2126071; AT1G01700,AT4G00460 Rop guanine nucleotide exchange factor Os07g0481100 protein,Os10g0550300 protein Q7XI77,Q9FWM4 Q7XI77_ORYSJ,Q9FWM4_ORYSJ P0434A03.138 Os07g0481100 OSNPB_070481100,OSJNBa0015J15.29 Os10g0550300 OsJ_32378 OSNPB_100550300 ENOG411DTEF NPY1,ENP Q8H1D3,A0A1P8B383 NPY1_ARATH,A0A1P8B383_ARATH BTB/POZ domain-containing protein NPY1 (Protein ENHANCER OF PINOID) (Protein MACCHI-BOU 4) (Protein NAKED PINS IN YUC MUTANTS 1),Phototropic-responsive NPH3 family protein DISRUPTION PHENOTYPE: Seedlings with abnormal cotyledons. {ECO:0000269|PubMed:18000043}. Fused floral organs; Abnormal flower number-R. Ruiz-2005 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Coregulates with PID the auxin-mediated plant organogenesis. Regulates cotyledon development through control of PIN1 polarity. May play an essential role in root gravitropic responses. {ECO:0000250, ECO:0000269|PubMed:16107478, ECO:0000269|PubMed:17913786, ECO:0000269|PubMed:18000043, ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. PATHWAY: Protein modification; protein ubiquitination. 64402,58391 BTB/POZ domain-containing protein NPY1 (Protein ENHANCER OF PINOID) (Protein MACCHI-BOU 4) (Protein NAKED PINS IN YUC MUTANTS 1),Phototropic-responsive NPH3 family protein late endosome [GO:0005770]; plasma membrane [GO:0005886]; signal transducer activity [GO:0004871]; apical protein localization [GO:0045176]; basipetal auxin transport [GO:0010540]; cotyledon development [GO:0048825]; flower development [GO:0009908]; inflorescence development [GO:0010229]; phyllome development [GO:0048827]; positive regulation of flower development [GO:0009911]; protein ubiquitination [GO:0016567],signal transducer activity [GO:0004871]; auxin transport [GO:0060918]; plant organ development [GO:0099402] DEVELOPMENTAL STAGE: Detected in globular-stage embryos in the epidermis with the highest concentration at the apical region. At early heart stage, expression is restricted to the two cotyledon primordia and the meristem. In the late heart to torpedo stages, expression is restricted to the meristem and the cotyledon tips. In mature embryos, stricly expressed at the apical meristem. During seedling development, highly expressed in young leaf primordia and the apical meristems. Detected in the protodermal cell layer of the embryo and the meristem L1 layer at the site of organ initiation. After transition to the reproductive phase, detected in the inflorescence meristem and at various stages of floral development. {ECO:0000269|PubMed:17913786, ECO:0000269|PubMed:18000043}. TISSUE SPECIFICITY: Expressed mainly in the apical regions of embryos including cotyledon tips and the apical meristem. Highly expressed in primary root tips. {ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. locus:2116752; AT4G31820 BTB POZ domain-containing protein NPY1-like Os09g0420900 protein (Putative RPT2) Q69P69 Q69P69_ORYSJ Os09g0420900 Os09g0420900 OJ1740_D06.2 OsJ_29396 OSNPB_090420900 P0668D04.33 ENOG411DTEE PCMP-E32,SLG1 Q9FNN9,A0A1P8BEU9,A0A1P8BEU2,A0A1P8BEV0 PP370_ARATH,A0A1P8BEU9_ARATH,A0A1P8BEU2_ARATH,A0A1P8BEV0_ARATH Putative pentatricopeptide repeat-containing protein At5g08490,Tetratricopeptide repeat (TPR)-like superfamily protein 94488,77808,73918,90599 Putative pentatricopeptide repeat-containing protein At5g08490,Tetratricopeptide repeat (TPR)-like superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] locus:2159582; AT5G08490 Pentatricopeptide repeat-containing protein Os02g0290000 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6K892 Q6K892_ORYSJ Os02g0290000 Os02g0290000 OJ1756_H07.55 OSNPB_020290000 ENOG411DTED STT3A Q93ZY3,A0A1P8BFQ7 STT3A_ARATH,A0A1P8BFQ7_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A (Oligosaccharyl transferase subunit STT3A) (STT3-A) (EC 2.4.99.18) (Integral membrane protein 1) (Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A),Staurosporin and temperature sensitive 3-like A DISRUPTION PHENOTYPE: Salt/osmotic sensitivity associated with root tip growth arrest and swelling and the induction of lateral roots. {ECO:0000269|PubMed:12972670}. Thick lateral roots-H. Koiwa-2003 FUNCTION: Catalytic subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). SST3A seems to be involved in complex substrate specificity (By similarity). Controls adaptive responses to salt/osmotic stress. Acts as a key glycosylation determinant for EFR function during plant innate immunity. {ECO:0000250, ECO:0000269|PubMed:12972670, ECO:0000269|PubMed:19763086, ECO:0000269|PubMed:19763087}. PATHWAY: Protein modification; protein glycosylation. ARA:AT5G19690-MONOMER; 2.4.99.18; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 2.4.99.18 86113,81861 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A (Oligosaccharyl transferase subunit STT3A) (STT3-A) (EC 2.4.99.18) (Integral membrane protein 1) (Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A),Staurosporin and temperature sensitive 3-like A endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; oligosaccharyltransferase complex [GO:0008250]; plasma membrane [GO:0005886]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; post-translational protein modification [GO:0043687]; protein N-linked glycosylation via asparagine [GO:0018279]; regulation of response to osmotic stress [GO:0047484]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; oligosaccharyl transferase activity [GO:0004576]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Expressed in the root and in the shoot. {ECO:0000269|PubMed:12972670}. locus:2183149; AT5G19690 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A (Oligosaccharyl transferase subunit STT3A) (STT3-A) (EC 2.4.99.18) (Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A),Os05g0519900 protein (Fragment) Q6F2Z1,A0A0N7KL37,A0A0P0WPW2,A0A0P0WPJ2 STT3A_ORYSJ,A0A0N7KL37_ORYSJ,A0A0P0WPW2_ORYSJ,A0A0P0WPJ2_ORYSJ STT3A Os05g0519900 LOC_Os05g44360 OsJ_19234 P0483D07.5 P0599F04.15,Os05g0519900 OSNPB_050519900 FUNCTION: Catalytic subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). SST3A seems to be involved in complex substrate specificity (By similarity). {ECO:0000250}. ENOG411DTEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0529900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J013154H21, full insert sequence) Q6H761 Q6H761_ORYSJ Os02g0529900 Os02g0529900 OsJ_06992 OSNPB_020529900 P0476H10.28 ENOG411DTEA GAPA1,GAPB,GAPA2,GAPA-2 P25856,P25857,Q9LPW0,A0A1P8APR6,F4HNZ6 G3PA1_ARATH,G3PB_ARATH,G3PA2_ARATH,A0A1P8APR6_ARATH,F4HNZ6_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase A subunit 1),Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase B),Glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase A subunit 2),Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.-),Glyceraldehyde 3-phosphate dehydrogenase A subunit 2 FUNCTION: Involved in the photosynthetic reductive pentose phosphate pathway (Calvin-Benson cycle). Catalyzes the reduction of 1,3-diphosphoglycerate by NADPH (By similarity). {ECO:0000250}. MISCELLANEOUS: Plants contain three types of GAPDH: NAD-dependent cytosolic forms which participate in glycolysis, NAD-dependent chloroplastic forms which participate in plastidic glycolysis and NADP-dependent chloroplastic forms which participate in the photosynthetic reductive pentose phosphate pathway (Calvin-Benson cycle). All the forms are encoded by distinct genes. PATHWAY: Carbohydrate biosynthesis; Calvin cycle. ARA:AT3G26650-MONOMER;MetaCyc:AT3G26650-MONOMER; 1.2.1.13; 1.2.1.13,1.2.1.- 42490,47660,42847,47604,34333 Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase A subunit 1),Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase B),Glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase A subunit 2),Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.-),Glyceraldehyde 3-phosphate dehydrogenase A subunit 2 apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; stromule [GO:0010319]; supramolecular complex [GO:0099080]; disordered domain specific binding [GO:0097718]; glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [GO:0004365]; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity [GO:0047100]; identical protein binding [GO:0042802]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; protein homodimerization activity [GO:0042803]; glucose metabolic process [GO:0006006]; protein homotetramerization [GO:0051289]; reductive pentose-phosphate cycle [GO:0019253]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; response to sucrose [GO:0009744],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; stromule [GO:0010319]; glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [GO:0004365]; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity [GO:0047100]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; reductive pentose-phosphate cycle [GO:0019253]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; response to sucrose [GO:0009744],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity [GO:0047100]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; reductive pentose-phosphate cycle [GO:0019253],integral component of membrane [GO:0016021]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [GO:0016620]; glucose metabolic process [GO:0006006],oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [GO:0016620] TISSUE SPECIFICITY: Expressed in leaves and stems. {ECO:0000269|PubMed:15533878}. locus:2090802;,locus:2009864;,locus:2010361; AT3G26650,AT1G42970,AT1G12900 glyceraldehyde-3-phosphate dehydrogenase Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.-),Os04g0459500 protein (cDNA clone:J013116O22, full insert sequence),Os03g0129300 protein (Fragment) Q7X8A1,B7EE22,Q9SNK3,A0A0P0VSI8 Q7X8A1_ORYSJ,B7EE22_ORYSJ,Q9SNK3_ORYSJ,A0A0P0VSI8_ORYSJ Os04g0459500 Os04g0459500 OsJ_15048 OSJNBa0036B21.24 OSJNBa0072F16.1 OSNPB_040459500,Os04g0459500 OSNPB_040459500,OJ1528D07.7 LOC_Os03g03720 Os03g0129300 OsJ_09272 OSNPB_030129300,Os03g0129300 OSNPB_030129300 ENOG411DTEN Q9MAG8,A0A1P8AS46 PPR79_ARATH,A0A1P8AS46_ARATH Putative pentatricopeptide repeat-containing protein At1g53330,Pentatricopeptide repeat (PPR) superfamily protein 30-40% T3 seeds are embryo lethal the rest had delayed germination. Among the germinated plants they displayed a range of phenotypic expression: 1) seedling lethal 2) normal cotyledons later became elongated and fragile slightly narrower and curved rosette leaves reduced shoot apical dominancy elongated internode shorter primary roots and long lateral roots shorter siliques 3) very subtle changes FUNCTION: Involved during embryo development. {ECO:0000269|PubMed:17028967}. 53074,41236 Putative pentatricopeptide repeat-containing protein At1g53330,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; fruit development [GO:0010154]; RNA modification [GO:0009451]; root development [GO:0048364]; shoot system development [GO:0048367] locus:2009620; AT1G53330 Pentatricopeptide repeat-containing protein Os05g0207200 protein Q0DK11 Q0DK11_ORYSJ Os05g0207200 Os05g0207200 OsJ_17504 OSNPB_050207200 ENOG411DTEM ASF1A,ASF1B Q9C9M6,Q9LS09 ASF1A_ARATH,ASF1B_ARATH Probable histone chaperone ASF1A (Anti-silencing function protein 1-like protein a) (Anti-silencing function 1a protein) (S-locus protein 7) (AtSP7) (Silencing group A protein 2),Histone chaperone ASF1B (Anti-silencing function protein 1-like protein b) (Anti-silencing function 1b protein) (Silencing group A protein 1) FUNCTION: Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly (By similarity). While encoded by a region of the Arabidopsis thaliana genome that is homologous to the Brassica S-locus for self incompatibility, this protein may not play the same role in Arabidopsis thaliana. {ECO:0000250}.,FUNCTION: Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly. {ECO:0000250}. 22133,24701 Probable histone chaperone ASF1A (Anti-silencing function protein 1-like protein a) (Anti-silencing function 1a protein) (S-locus protein 7) (AtSP7) (Silencing group A protein 2),Histone chaperone ASF1B (Anti-silencing function protein 1-like protein b) (Anti-silencing function 1b protein) (Silencing group A protein 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell division [GO:0051301]; chromatin assembly or disassembly [GO:0006333]; covalent chromatin modification [GO:0016569]; double-strand break repair via homologous recombination [GO:0000724]; mitotic cell size control checkpoint [GO:0031567]; regulation of cell size [GO:0008361]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091],cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell division [GO:0051301]; chromatin assembly or disassembly [GO:0006333]; covalent chromatin modification [GO:0016569]; DNA mediated transformation [GO:0009294]; double-strand break repair via homologous recombination [GO:0000724]; mitotic cell size control checkpoint [GO:0031567]; regulation of cell size [GO:0008361]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Expressed in leaves and flower buds. {ECO:0000269|PubMed:11759841}. locus:2033359;,locus:2144416; AT1G66740,AT5G38110 Histone chaperone Os05g0553800 protein (Putative anti-silencing protein) (cDNA clone:J033138P03, full insert sequence) Q6I632 Q6I632_ORYSJ Os05g0553800 Os05g0553800 OJ1263_E10.5 OSNPB_050553800 ENOG411DPNQ MRG7.19 A0A1P8B9R0,A0A1P8B9Q7,F4JWJ6,F4JWJ7 A0A1P8B9R0_ARATH,A0A1P8B9Q7_ARATH,F4JWJ6_ARATH,F4JWJ7_ARATH Transcription regulator NOT2/NOT3/NOT5 family protein 95625,89983,92952,93253 Transcription regulator NOT2/NOT3/NOT5 family protein CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355],CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]; regulation of transcription, DNA-templated [GO:0006355] locus:2172389; AT5G18230 transcription regulator NOT2 NOT3 NOT5 family protein Not1 N-terminal domain, CCR4-Not complex component family protein, expressed (Os03g0652100 protein),Os03g0652600 protein Q7XZZ2,A0A0P0W1E9 Q7XZZ2_ORYSJ,A0A0P0W1E9_ORYSJ Os03g0652100 LOC_Os03g44900 Os03g0652100 OSJNBa0093M23.12 OSNPB_030652100,Os03g0652600 OSNPB_030652600 ENOG411DTEK TOR1,TOR1L1 Q9T041,F4I6M4 TOR1_ARATH,TORL1_ARATH Microtubule-associated protein TORTIFOLIA1 (Microtubule-associated protein SPIRAL2) (Protein CONVOLUTA),TORTIFOLIA1-like protein 1 (Microtubule-associated protein SPIRAL2-like) DISRUPTION PHENOTYPE: Right-handed twisting of petioles. Enhanced twisting when associated with SP2L disruption. {ECO:0000269|PubMed:18577573}.,DISRUPTION PHENOTYPE: Right-handed twisting of petioles when associated with SPR2 disruption. {ECO:0000269|PubMed:18577573}. Abnormal root gravitropism; Anti-clockwise twisting rosette leaves, cauline leaves, and petals-T. Hashimoto-2000 FUNCTION: Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth (PubMed:18577573). Determines microtubule organization by modulating microtubule severing (PubMed:24055158). {ECO:0000269|PubMed:18577573, ECO:0000269|PubMed:24055158}.,FUNCTION: Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth. {ECO:0000269|PubMed:18577573}. 94004,89945 Microtubule-associated protein TORTIFOLIA1 (Microtubule-associated protein SPIRAL2) (Protein CONVOLUTA),TORTIFOLIA1-like protein 1 (Microtubule-associated protein SPIRAL2-like) cortical microtubule, transverse to long axis [GO:0010005]; microtubule binding [GO:0008017]; circumnutation [GO:0010031]; multicellular organism development [GO:0007275]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, stems, flowers, siliques, inflorescences, petioles, cotyledons, and leaves. Particularly present in root tips and shoot meristems. {ECO:0000269|PubMed:15324671, ECO:0000269|PubMed:15557095, ECO:0000269|PubMed:18577573}.,TISSUE SPECIFICITY: Expressed at low levels in roots, hypocotyls, stems, flowers, siliques, cotyledons, and leaves. Particularly present in hydathodes of cotyledons and root hairs. {ECO:0000269|PubMed:18577573}. locus:2136467;,locus:2036411; AT4G27060,AT1G50890 microtubule-associated protein Os07g0520400 protein (Putative potyviral helper component protease-interacting protein) (cDNA, clone: J065124A13, full insert sequence) Q8H513 Q8H513_ORYSJ OJ1793_E11.120 Os07g0520400 OsJ_24477 OSNPB_070520400 ENOG411DTEJ RBL Q5E915 RBBP_ARATH Protein RBL (COMPASS-like H3K4 histone methylation complex component RBL) (RBBP5-like protein) (Retinoblastoma-binding protein-like) FUNCTION: Promotes the expression of FLC and FLC homologs to repress the floral transition. {ECO:0000269|PubMed:21423667}. R-ATH-3214841;R-ATH-8951664; 60142 Protein RBL (COMPASS-like H3K4 histone methylation complex component RBL) (RBBP5-like protein) (Retinoblastoma-binding protein-like) nucleus [GO:0005634]; Set1C/COMPASS complex [GO:0048188]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Strongly expressed in root tips, shoot apices, vascular tissues, developing embryos and endosperms. {ECO:0000269|PubMed:21423667}. locus:2092930; AT3G21060 retinoblastoma-binding protein 5-like Os03g0207900 protein (Putative retinoblastoma-binding protein) (Retinoblastoma-binding protein, putative, expressed),Os03g0207900 protein (Fragment) Q8H060,A0A0P0VUJ1 Q8H060_ORYSJ,A0A0P0VUJ1_ORYSJ OSJNBa0014O06.12 LOC_Os03g10990 Os03g0207900 OsJ_09856 OSNPB_030207900,Os03g0207900 OSNPB_030207900 ENOG411DTEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DTEH MTI20.23 Q9S9N7,Q9FJL9,Q9SAH6 Q9S9N7_ARATH,Q9FJL9_ARATH,Q9SAH6_ARATH At1g15970 (DNA glycosylase superfamily protein) (T24D18.7 protein) (Uncharacterized protein At1g15970),At5g57970 (DNA glycosylase superfamily protein) (Similarity to DNA-3-methyladenine glycosylase) (Uncharacterized protein At5g57970),At1g80850 (DNA glycosylase superfamily protein) (F23A5.20 protein) ARA:AT1G15970-MONOMER;,ARA:AT5G57970-MONOMER;,ARA:AT1G80850-MONOMER; 39301,38650,36737 At1g15970 (DNA glycosylase superfamily protein) (T24D18.7 protein) (Uncharacterized protein At1g15970),At5g57970 (DNA glycosylase superfamily protein) (Similarity to DNA-3-methyladenine glycosylase) (Uncharacterized protein At5g57970),At1g80850 (DNA glycosylase superfamily protein) (F23A5.20 protein) DNA-3-methyladenine glycosylase activity [GO:0008725]; base-excision repair [GO:0006284] locus:2200447;,locus:2174373;,locus:2025697; AT1G15970,AT5G57970,AT1G80850 methyladenine glycosylase Os09g0420300 protein (Putative chain A, solution structure of 3-methyladenine DNA glycosylase I (Tag)) (cDNA clone:J013136E12, full insert sequence),Os04g0501200 protein (cDNA clone:J023004E10, full insert sequence),Os06g0649800 protein Q6ERQ1,B7EG11,A0A0P0WZD8 Q6ERQ1_ORYSJ,B7EG11_ORYSJ,A0A0P0WZD8_ORYSJ Os09g0420300 Os09g0420300 OSNPB_090420300 P0668D04.26 P0701F11.45,Os04g0501200 OsJ_15351 OSNPB_040501200,Os06g0649800 OSNPB_060649800 ENOG411DTEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) Os09g0544700 protein,Os11g0622150 protein Q7XXM9,A0A0P0Y582 Q7XXM9_ORYSJ,A0A0P0Y582_ORYSJ P0705E11.10 Os09g0544700 OSNPB_090544700,Os11g0622150 OSNPB_110622150 ENOG411DTEV B120,SD113 Q9T058,Q9SXB8,O81906,Q9LPZ9,Q9SY89,A0A1P8B6M9,A0A1P8B6N6,A0A1P8AMY7,A0A1P8B6N1,A0A1P8B6M8,A0A1P8B6N5,A0A1P8B5P5,F4JJH9,F4I8U6,A0A1P8ARD8 Y4119_ARATH,Y1133_ARATH,B120_ARATH,SD113_ARATH,Y1661_ARATH,A0A1P8B6M9_ARATH,A0A1P8B6N6_ARATH,A0A1P8AMY7_ARATH,A0A1P8B6N1_ARATH,A0A1P8B6M8_ARATH,A0A1P8B6N5_ARATH,A0A1P8B5P5_ARATH,F4JJH9_ARATH,F4I8U6_ARATH,A0A1P8ARD8_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase B120 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 (EC 2.7.11.1) (Calmodulin-binding receptor-like protein kinase 1) (Receptor-like protein kinase 2) (S-domain-1 (SD1) receptor kinase 13) (SD1-13),Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 (EC 2.7.11.1),S-locus lectin protein kinase family protein,Protein kinase superfamily protein DISRUPTION PHENOTYPE: Enhanced resistances to the virulent bacterial pathogen P.syringae pv. tomato accompanied by an increase in PR1 expression. {ECO:0000269|PubMed:19222996}. Resistant to bacterial infection-W. Chung-2009 FUNCTION: Receptor-like serine/threonine-protein kinase that represses the disease resistance signaling pathway triggered in response to bacterial pathogen such as Pseudomonas syringae pv. tomato. {ECO:0000269|PubMed:19222996}. 2.7.11.1 95816,94318,95168,93234,95382,79976,79247,84050,81820,88053,72213,85450,12586,94150,85371 G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase B120 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 (EC 2.7.11.1) (Calmodulin-binding receptor-like protein kinase 1) (Receptor-like protein kinase 2) (S-domain-1 (SD1) receptor kinase 13) (SD1-13),Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 (EC 2.7.11.1),S-locus lectin protein kinase family protein,Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin protein ligase binding [GO:0031625]; cellular response to salicylic acid stimulus [GO:0071446]; defense response to bacterium, incompatible interaction [GO:0009816]; protein autophosphorylation [GO:0046777]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; recognition of pollen [GO:0048544],protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Mostly expressed in rosette leaves, and, to a lower extent, in cauline leaves and stems. {ECO:0000269|PubMed:19222996}. locus:2137010;,locus:2202054;,locus:2141176;,locus:2200151;,locus:2200908;,locus:504955236; AT4G11900,AT1G11330,AT4G21390,AT1G11350,AT1G61610,AT4G21366 serine threonine-protein kinase Os07g0551300 protein (Putative S-receptor kinase KIK1),Os07g0550900 protein (Putative S-receptor kinase KIK1) (cDNA clone:J033052G09, full insert sequence),Os01g0783900 protein Q7EZ32,Q7EZ33,A0A0P0V905 Q7EZ32_ORYSJ,Q7EZ33_ORYSJ,A0A0P0V905_ORYSJ OSJNBb0041B22.109 P0534A03.143 Os07g0551300 OSNPB_070551300,OSJNBb0041B22.106 P0534A03.140 Os07g0550900 OsJ_24674 OSNPB_070550900,Os01g0783900 OSNPB_010783900 ENOG411DTEU CYP89A9 Q9SRQ1 C89A9_ARATH Cytochrome P450 89A9 (EC 1.14.-.-) FUNCTION: Involved in the chlorophyll breakdown by its action in nonpolar fluorescent chlorophyll catabolite (FCC) decarbonylation. {ECO:0000269|Ref.6}. ARA:AT3G03470-MONOMER; 1.14.-.- 59255 Cytochrome P450 89A9 (EC 1.14.-.-) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2099714; AT3G03470 Cytochrome P450 NA NA NA NA NA NA NA ENOG411DTET Q8L7T5,A0A1P8ATA9,A0A1I9LLZ2,F4IIN7,F4J5I0,F4I6B4,F4I6B2,F4I6B3 Q8L7T5_ARATH,A0A1P8ATA9_ARATH,A0A1I9LLZ2_ARATH,F4IIN7_ARATH,F4J5I0_ARATH,F4I6B4_ARATH,F4I6B2_ARATH,F4I6B3_ARATH At1g07990/T6D22_5 (SIT4 phosphatase-associated family protein),SIT4 phosphatase-associated family protein 89589,66064,83315,87508,87640,84902,89888,89026 At1g07990/T6D22_5 (SIT4 phosphatase-associated family protein),SIT4 phosphatase-associated family protein vacuolar membrane [GO:0005774] locus:2205185;,locus:2057507;,locus:2096880;,locus:2028185; AT1G07990,AT2G28360,AT3G45190,AT1G30470 serine threonine-protein phosphatase 6 regulatory subunit Os04g0620400 protein (Fragment),Os05g0592500 protein (cDNA clone:J013034M16, full insert sequence) (cDNA clone:J013039C12, full insert sequence),Os01g0585700 protein (Fragment),Os01g0586000 protein Q0JA17,Q6L4R9,Q0JLN7,A0A0P0V4K7 Q0JA17_ORYSJ,Q6L4R9_ORYSJ,Q0JLN7_ORYSJ,A0A0P0V4K7_ORYSJ Os04g0620400 Os04g0620400 OSNPB_040620400,Os05g0592500 OsJ_19758 OSNPB_050592500 P0663C08.9,Os01g0585700 Os01g0585700 OSNPB_010585700,Os01g0586000 OSNPB_010586000 ENOG411DTES GALS2,GALS1,GALS3,T27I15_80,F21O3.9 Q9LTZ9,O22807,O65431,Q9LDS4,Q9SRS8 GALS2_ARATH,GALS1_ARATH,GALS3_ARATH,Q9LDS4_ARATH,Q9SRS8_ARATH Galactan beta-1,4-galactosyltransferase GALS2 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 2),Galactan beta-1,4-galactosyltransferase GALS1 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 1),Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3),Gb|AAF02147.1 (Glycosyltransferase family protein (DUF23)) (Uncharacterized protein T27I15_80),F21O3.9 protein (Glycosyltransferase family protein (DUF23)) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced content of beta-1,4-galactan in leaf cell wall. {ECO:0000269|PubMed:23243126}. FUNCTION: Involved in the biosynthesis of beta-1,4-galactan. Beta-1,4-galactans are abundant polysaccharides in plant cell walls and are found as side-chain of rhamnogalacturonan I, which is a major component of pectin. {ECO:0000269|PubMed:23243126}.,FUNCTION: Involved in the biosynthesis of beta-1,4-galactan. Can transfer galactose residues from UDP-galactose to beta-1,4-galactopentaose in vitro. Forms specifically beta-1,4-galactosyl linkages and can add successive beta-1,4-galactosyl residues to the acceptor. Beta-1,4-galactans are abundant polysaccharides in plant cell walls and are found as side-chain of rhamnogalacturonan I, which is a major component of pectin. {ECO:0000269|PubMed:23243126}. MISCELLANEOUS: Plants over-expressing GALS1 have a strong increase in beta-1,4-galactan content in leaf cell wall. {ECO:0000269|PubMed:23243126}. 2.4.1.- 59956,56865,57783,12049,11973 Galactan beta-1,4-galactosyltransferase GALS2 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 2),Galactan beta-1,4-galactosyltransferase GALS1 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 1),Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3),Gb|AAF02147.1 (Glycosyltransferase family protein (DUF23)) (Uncharacterized protein T27I15_80),F21O3.9 protein (Glycosyltransferase family protein (DUF23)) cytoplasm [GO:0005737]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; beta-1,3-galactosyltransferase activity [GO:0048531]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555],transferase activity [GO:0016740] TISSUE SPECIFICITY: Expressed in the midrib of mature leaves, root vasculature, flower filaments, siliques and seeds. {ECO:0000269|PubMed:23243126}.,TISSUE SPECIFICITY: Expressed in root vasculature, mature leaves, trichomes, flowers, siliques and seeds. {ECO:0000269|PubMed:23243126}.,TISSUE SPECIFICITY: Expressed in root caps, mature leaves, top of the stems and seeds. {ECO:0000269|PubMed:23243126}. locus:2152130;,locus:2050982;,locus:2120387;,locus:2101007;locus:2164743;,locus:2079726; AT5G44670,AT2G33570,AT4G20170,AT3G60990AT5G48190;,AT3G07380 expressed protein Os02g0712500 protein,Os06g0624700 protein,Os06g0328800 protein (cDNA clone:J013049H12, full insert sequence) Q5SMT2,Q69TZ4,Q69SV6 Q5SMT2_ORYSJ,Q69TZ4_ORYSJ,Q69SV6_ORYSJ Os02g0712500 Os02g0712500 OJ1038_A06.31 OsJ_08123 OSNPB_020712500,Os06g0624700 OSJNBa0029G06.23 OSNPB_060624700,Os06g0328800 OsJ_21187 OSNPB_060328800 P0019A05.33 ENOG411DTER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein (Os03g0573500 protein) (Putative disease resistance complex protein) (Putative disease resistance protein) Q84MT6 Q84MT6_ORYSJ Os03g0573500 OSJNBa0095N06.26 LOC_Os03g37720 Os03g0573500 OSJNBa0029P07.5 OSNPB_030573500 ENOG411DTEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein (Os10g0135100 protein),Os10g0134800 protein (Fragment),Os10g0134900 protein Q948D3,A0A0N7KRE5,A0A0P0XS54 Q948D3_ORYSJ,A0A0N7KRE5_ORYSJ,A0A0P0XS54_ORYSJ LOC_Os10g04570 Os10g0135100 OSJNBa0013J21.20 OSNPB_100135100,Os10g0134800 OSNPB_100134800,Os10g0134900 OSNPB_100134900 ENOG411DTEP STR8 F4I933,F4I932 STR8_ARATH,F4I932_ARATH Rhodanese-like domain-containing protein 8, chloroplastic (Sulfurtransferase 8) (AtStr8),Rhodanese/Cell cycle control phosphatase superfamily protein 50850,50623 Rhodanese-like domain-containing protein 8, chloroplastic (Sulfurtransferase 8) (AtStr8),Rhodanese/Cell cycle control phosphatase superfamily protein chloroplast [GO:0009507] locus:2030908; AT1G17850 RHOD Os03g0861700 protein (Rhodanese-like domain containing protein, expressed) (cDNA clone:J013051M12, full insert sequence),Os03g0861700 protein (Fragment) Q10A88,A0A0P0W6B8 Q10A88_ORYSJ,A0A0P0W6B8_ORYSJ LOC_Os03g64350 Os03g0861700 OSNPB_030861700,Os03g0861700 OSNPB_030861700 ENOG411DTEZ RLT3 F4JRF5 RLT3_ARATH Homeobox-DDT domain protein RLT3 (Protein RINGLET 3) FUNCTION: Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. 127805 Homeobox-DDT domain protein RLT3 (Protein RINGLET 3) nucleus [GO:0005634]; DNA binding [GO:0003677]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2135838; AT4G12750 NA NA NA NA NA NA NA NA ENOG411DTEY CLPR1 Q9XJ35 CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic (ClpR1) (Protein SUPPRESSOR OF VARIEGATION 2) (nClpP5) DISRUPTION PHENOTYPE: Variegated leaf phenotype (Ref.8). Slow-growth phenotype, with chlorotic leaves during early development (PubMed:17009084, PubMed:18754756). {ECO:0000269|PubMed:17009084, ECO:0000269|PubMed:18754756, ECO:0000303|Ref.8}. Dwarf; Slow growth; Necrotic leaves; Abnormal chloroplast morphology-A. Clarke-2009 FUNCTION: Required for chloroplast development and differentiation. {ECO:0000269|PubMed:17009084, ECO:0000269|PubMed:18599582}. 42627 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic (ClpR1) (Protein SUPPRESSOR OF VARIEGATION 2) (nClpP5) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplastic endopeptidase Clp complex [GO:0009840]; plastid stroma [GO:0009532]; RNA binding [GO:0003723]; serine-type endopeptidase activity [GO:0004252]; chloroplast organization [GO:0009658]; RNA processing [GO:0006396]; rRNA processing [GO:0006364] locus:2031070; AT1G49970 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit,Os05g0278950 protein (Fragment) Q6L4S1,A0A0N7KKG2 Q6L4S1_ORYSJ,A0A0N7KKG2_ORYSJ Os05g0592100 Os05g0592100 OsJ_19755 OSNPB_050592100 P0663C08.7,Os05g0278950 OSNPB_050278950 ENOG411DTEX CLPP4 Q94B60 CLPP4_ARATH ATP-dependent Clp protease proteolytic subunit 4, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP4) (nClpP4) (nClpP3) DISRUPTION PHENOTYPE: Embryo lethal when homozygous. {ECO:0000269|PubMed:23548781}. FUNCTION: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). Essential protein required for chloroplast development and integrity (PubMed:16705403, PubMed:17241447). Essential for Embryogenesis (PubMed:23548781). {ECO:0000250, ECO:0000269|PubMed:16705403, ECO:0000269|PubMed:17241447, ECO:0000269|PubMed:23548781}. 3.4.21.92 31498 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP4) (nClpP4) (nClpP3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; chloroplastic endopeptidase Clp complex [GO:0009840]; plastid stroma [GO:0009532]; thylakoid [GO:0009579]; serine-type endopeptidase activity [GO:0004252]; chloroplast organization [GO:0009658]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510] TISSUE SPECIFICITY: Mostly expressed in leaves. Also detected in stems, and to a lower extent, in roots (at protein level). {ECO:0000269|PubMed:11982939}. locus:2163538; AT5G45390 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit Q7XBR2 Q7XBR2_ORYSJ Os10g0580800 LOC_Os10g43050 Os10g0580800 OsJ_32613 OSJNBa0056G17.6 OSNPB_100580800 ENOG411DTE7 TSC10A,TSC10B Q0WRJ2,F4JZN6,A0A1I9LMA8 TC10A_ARATH,TC10B_ARATH,A0A1I9LMA8_ARATH 3-dehydrosphinganine reductase TSC10A (EC 1.1.1.102) (3-ketodihydrosphingosine reductase) (KDS reductase) (3-ketosphinganine reductase),3-dehydrosphinganine reductase TSC10B (EC 1.1.1.102) (3-ketodihydrosphingosine reductase) (KDS reductase) (3-ketosphinganine reductase),NAD(P)-binding Rossmann-fold superfamily protein DISRUPTION PHENOTYPE: High frequency of tricotyledons and altered flower morphology. The double mutants tsc10a and tsc10b are not viable. {ECO:0000269|PubMed:21421810}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants tsc10a and tsc10b are not viable. {ECO:0000269|PubMed:21421810}. FUNCTION: Catalyzes the reduction of 3-ketodihydrosphingosine (KDS) to dihydrosphingosine (DHS). Required for sphingolipid biosynthesis. In plants, sphingolipids seems to play a critical role in mineral ion homeostasis, most likely through their involvement in the ion transport functionalities of membrane systems in the root. Lacks stereospecificity and can also produce L-threo-DHS in addition to D-erythro-DHS. {ECO:0000269|PubMed:21421810}.,FUNCTION: Catalyzes the reduction of 3-ketodihydrosphingosine (KDS) to dihydrosphingosine (DHS). Required for sphingolipid biosynthesis. In plants, sphingolipids seems to play a critical role in mineral ion homeostasis, most likely through their involvement in the ion transport functionalities of membrane systems in the root. Is stereospecific for D-erythro-DHS production and does not produce L-threo-DHS. {ECO:0000269|PubMed:21421810}. PATHWAY: Lipid metabolism; sphingolipid metabolism. R-ATH-1660661; 1.1.1.102 34980,35835,36939 3-dehydrosphinganine reductase TSC10A (EC 1.1.1.102) (3-ketodihydrosphingosine reductase) (KDS reductase) (3-ketosphinganine reductase),3-dehydrosphinganine reductase TSC10B (EC 1.1.1.102) (3-ketodihydrosphingosine reductase) (KDS reductase) (3-ketosphinganine reductase),NAD(P)-binding Rossmann-fold superfamily protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; 3-dehydrosphinganine reductase activity [GO:0047560]; sphingolipid biosynthetic process [GO:0030148],integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21421810}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:21421810}. locus:2080379;,locus:2182192; AT3G06060,AT5G19200 3-ketodihydrosphingosine Os02g0701900 protein (Putative short-chain dehydrogenase/reductase) (cDNA clone:001-027-E08, full insert sequence) Q6ZHJ6 Q6ZHJ6_ORYSJ Os02g0701900 OJ1218_D07.5 OsJ_08059 OSNPB_020701900 ENOG411DTE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0460100 protein (cDNA, clone: J065208G04, full insert sequence) Q67J12 Q67J12_ORYSJ Os09g0460100 Os09g0460100 B1045B05.43 OSJNBa0054F02.21 OSNPB_090460100 ENOG411DTE5 Q9FZ25,Q9ZSI6,A0A1P8AX35,A0A1P8AWZ7 Q9FZ25_ARATH,Q9ZSI6_ARATH,A0A1P8AX35_ARATH,A0A1P8AWZ7_ARATH At1g02360 (Chitinase family protein) (Putative chitinase),At4g01700 (Chitinase family protein) (Putative chitinase) (T15B16.5 protein),Chitinase family protein ARA:AT1G02360-MONOMER;,ARA:AT4G01700-MONOMER; 30137,31465,35603,36317 At1g02360 (Chitinase family protein) (Putative chitinase),At4g01700 (Chitinase family protein) (Putative chitinase) (T15B16.5 protein),Chitinase family protein chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response to fungus [GO:0050832],cell wall [GO:0005618]; chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response to fungus [GO:0050832],chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032] locus:2204918;,locus:2133412; AT1G02360,AT4G01700 chitinase Chitinase 10 (EC 3.2.1.14) (Pathogenesis related (PR)-3 chitinase 10) Q5NB11 CHI10_ORYSJ Cht10 GCH7 Os01g0287600 LOC_Os01g18400 OsJ_01366 P0511C01.18 ENOG411DTE3 BHLH12,BHLH2,GL3,ATMYC1 Q8W2F1,Q9CAD0,Q9FN69,F4JHC4,A0A1P8BHU1,A0A1P8B8H4,A0A1R7T3F7 BH012_ARATH,EGL1_ARATH,GL3_ARATH,F4JHC4_ARATH,A0A1P8BHU1_ARATH,A0A1P8B8H4_ARATH,A0A1R7T3F7_ARATH Transcription factor MYC1 (AtMYC1) (Basic helix-loop-helix protein 12) (AtbHLH12) (bHLH 12) (Transcription factor EN 58) (bHLH transcription factor bHLH012),Transcription factor EGL1 (Basic helix-loop-helix protein 2) (AtMYC146) (AtbHLH2) (bHLH 2) (Protein ENHANCER OF GLABRA 3) (Transcription factor EN 30) (bHLH transcription factor bHLH002),Transcription factor GLABRA 3 (Basic helix-loop-helix protein 1) (AtMYC6) (AtbHLH1) (bHLH 1) (Protein SHAPESHIFTER) (Transcription factor EN 31) (bHLH transcription factor bHLH001),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein DISRUPTION PHENOTYPE: Plants exhibit two-branched trichomes instead of three-branched trichomes. {ECO:0000269|PubMed:11063707}. Reduced trichome numbers.Trichomes that do form have reduced (e.g. single) branch numbers. Slightly increased root hair density in upper region of root-J. Schiefelbein-2003,Reduced, abnormal trichomes-A. Lloyd-2000 FUNCTION: Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.,FUNCTION: Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2. {ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}.,FUNCTION: Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14561633, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. 59988,66620,70539,66127,71145,57557,71521 Transcription factor MYC1 (AtMYC1) (Basic helix-loop-helix protein 12) (AtbHLH12) (bHLH 12) (Transcription factor EN 58) (bHLH transcription factor bHLH012),Transcription factor EGL1 (Basic helix-loop-helix protein 2) (AtMYC146) (AtbHLH2) (bHLH 2) (Protein ENHANCER OF GLABRA 3) (Transcription factor EN 30) (bHLH transcription factor bHLH002),Transcription factor GLABRA 3 (Basic helix-loop-helix protein 1) (AtMYC6) (AtbHLH1) (bHLH 1) (Protein SHAPESHIFTER) (Transcription factor EN 31) (bHLH transcription factor bHLH001),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; epidermal cell fate specification [GO:0009957]; jasmonic acid mediated signaling pathway [GO:0009867]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell fate specification [GO:0001708]; epidermal cell fate specification [GO:0009957]; jasmonic acid mediated signaling pathway [GO:0009867]; multicellular organism development [GO:0007275]; positive regulation of anthocyanin biosynthetic process [GO:0031542]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091]; trichome differentiation [GO:0010026],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; trichome patterning [GO:0048629],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] DEVELOPMENTAL STAGE: Localized in trichome developing region of leaves, prior to trichome initiation. Levels increase in initiating and young trichome cells, but dropped in the pavement cells between trichomes. Disappears in mature trichomes. {ECO:0000269|PubMed:12917293}. TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}.,TISSUE SPECIFICITY: Ubiquitous with higher levels in buds and flowers. Specifically localized in developing root hair cells. Expressed in epidermal root hair cells (trichoblasts) and moves to root hairless cells (atrichoblasts) by a cell-to-cell movement through plasmodesmata (at protein level). {ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15590742}.,TISSUE SPECIFICITY: Mostly expressed in roots and flowers. Also present in stems and leaves, and, to a lower extent, in hypocotyls. Expressed in epidermal root hair cells (trichoblasts) and moves to root hairless cells (atrichoblasts) by a cell-to-cell movement through plasmodesmata (at protein level). {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15590742}. locus:2026629;,locus:504954829;,locus:2127023; AT4G00480,AT1G63650,AT5G41315 Transcription factor OSJNBa0065O17.8 protein (Os04g0557800 protein),Os01g0576100 protein,Os04g0557200 protein (cDNA clone:J023013E24, full insert sequence),Os04g0557500 protein,Os11g0258700 protein,Os01g0577300 protein (Fragment),Os01g0575701 protein (Fragment),Os11g0258800 protein Q7XPS3,Q0JLS3,B7F427,A0A0P0WDK6,A0A0P0Y0X8,A0A0P0V4D3,A0A0P0V4F2,A0A0P0Y0Z7 Q7XPS3_ORYSJ,Q0JLS3_ORYSJ,B7F427_ORYSJ,A0A0P0WDK6_ORYSJ,A0A0P0Y0X8_ORYSJ,A0A0P0V4D3_ORYSJ,A0A0P0V4F2_ORYSJ,A0A0P0Y0Z7_ORYSJ Os04g0557800 OSJNBa0065O17.8 OSNPB_040557800,Os01g0576100 Os01g0576100 OSNPB_010576100,Os04g0557200 Os04g0557200 OsJ_15745 OSNPB_040557200,Os04g0557500 OSNPB_040557500,Os11g0258700 OSNPB_110258700,Os01g0577300 OSNPB_010577300,Os01g0575701 OSNPB_010575701,Os11g0258800 OSNPB_110258800 ENOG411DPNX Q9ZU67,Q9M065 PP162_ARATH,PP352_ARATH Pentatricopeptide repeat-containing protein At2g18520, mitochondrial,Pentatricopeptide repeat-containing protein At4g36680, mitochondrial 47328,46547 Pentatricopeptide repeat-containing protein At2g18520, mitochondrial,Pentatricopeptide repeat-containing protein At4g36680, mitochondrial membrane [GO:0016020]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156],mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2046288;,locus:2115375; AT2G18520,AT4G36680 Pentatricopeptide repeat-containing protein Membrane-associated salt-inducible protein like (Os02g0633200 protein) (cDNA clone:001-116-E03, full insert sequence) Q6H7J7 Q6H7J7_ORYSJ Os02g0633200 Os02g0633200 OJ1643_A10.16 OsJ_07630 OSNPB_020633200 ENOG411DTE1 EDR1 Q9FPR3,A0A1P8AUW3 EDR1_ARATH,A0A1P8AUW3_ARATH Serine/threonine-protein kinase EDR1 (EC 2.7.11.1) (MAPKK kinase EDR1) (Protein ENHANCED DISEASE RESISTANCE 1) (AtEDR1) (Serine/threonine/tyrosine-protein kinase 10),Protein kinase superfamily protein DISRUPTION PHENOTYPE: Hypersensitivity to abscisic acid (ABA). Confers defense priming against pathogens and stresses such as E.cichoracearum, H.parasitica and P.syringae pv. tomato DC3000. This enhanced resistance is associated with a faster induction of several defense responses, including callose deposition and host cell death, in a salicylic acid- (SA-) dependent manner, as well as a strong elicitation of stress-induced MPK3 and MPK6 activity. Enhanced stress responses and spontaneous necrotic lesions under drought conditions. In contrast, reduced resistance to the non-adapted hemibiotrophic C.gloeosporioides and higher susceptibility to the host-adapted pathogens C.higginsianum and necrotrophic A.brassicicola. These phenotypes are rescued by disruption of KEG. {ECO:0000269|PubMed:11114160, ECO:0000269|PubMed:15894742, ECO:0000269|PubMed:16565218, ECO:0000269|PubMed:18815384, ECO:0000269|PubMed:19318610, ECO:0000269|PubMed:21343429, ECO:0000269|PubMed:21605210, ECO:0000269|PubMed:21726375, ECO:0000269|PubMed:9634583}. Resistant to powdery mildew-R. Innes-2001 FUNCTION: MAPKKK serine/threonine-protein kinase involved in the regulation of a MAP kinase cascade (probably including MPK3 and MPK6) that negatively regulates salicylic acid- (SA-) dependent defense responses, abscisic acid (ABA) signaling, and ethylene-induced senescence. Modulates also stress response (e.g. drought) signaling and cell death, in an ORE9-dependent manner. Functions at a point of cross talk between ethylene, ABA and SA signaling that impinges on senescence and cell death. On the other hand, it confers sensitivity to various pathogens such as the fungus E.cichoracearum, the oomycete H.parasitica and the bacteria P.syringae pv. tomato DC3000. Required for resistance to some hemibiotrophic/necrotrophic fungal pathogens (e.g. C.gloeosporioides, C.higginsianum and A.brassicicola) through the induction of defensin expression, probably by repressing MYC2, an inhibitor of defensin genes (PDFs). Together with KEG, may regulate endocytic trafficking and/or the formation of signaling complexes on trans-Golgi network (TGN)/ early endosome (EE) vesicles during stress responses. {ECO:0000269|PubMed:11114160, ECO:0000269|PubMed:12492839, ECO:0000269|PubMed:15894742, ECO:0000269|PubMed:16565218, ECO:0000269|PubMed:18815384, ECO:0000269|PubMed:19318610, ECO:0000269|PubMed:21343429, ECO:0000269|PubMed:21605210, ECO:0000269|PubMed:21726375, ECO:0000269|PubMed:9634583}. R-ATH-430116;R-ATH-442742;R-ATH-5673000;R-ATH-5674135;R-ATH-5674499;R-ATH-5675221; 2.7.11.1 103589,100549 Serine/threonine-protein kinase EDR1 (EC 2.7.11.1) (MAPKK kinase EDR1) (Protein ENHANCED DISEASE RESISTANCE 1) (AtEDR1) (Serine/threonine/tyrosine-protein kinase 10),Protein kinase superfamily protein cytosol [GO:0005829]; early endosome [GO:0005769]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; trans-Golgi network transport vesicle membrane [GO:0012510]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; abscisic acid-activated signaling pathway [GO:0009738]; cell death [GO:0008219]; defense response to oomycetes [GO:0002229]; ethylene-activated signaling pathway [GO:0009873]; MAPK cascade [GO:0000165]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein autophosphorylation [GO:0046777]; regulation of defense response to bacterium [GO:1900424]; regulation of defense response to fungus [GO:1900150]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; response to bacterium [GO:0009617]; response to ethylene [GO:0009723]; response to fungus [GO:0009620]; response to water deprivation [GO:0009414],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2025515; AT1G08720 Protein kinase domain containing protein expressed EDR1, putative, expressed (Os03g0160100 protein),EDR1, putative, expressed (Os10g0430900 protein) Q10RG4,Q337Y0 Q10RG4_ORYSJ,Q337Y0_ORYSJ Os03g0160100 LOC_Os03g06410 Os03g0160100 OSNPB_030160100,Os10g0430900 LOC_Os10g29540 Os10g0430900 OsJ_31608 OSNPB_100430900 ENOG411DTE0 Q9SHI1 IF2C_ARATH Translation initiation factor IF-2, chloroplastic Double mutant suppresses leaf variegation due to var2 loss of function. First leaves are smaller with reduced cell size.,Segregates for embryo lethal (3wt:1emb). Homozygotes are not viable.,Double mutant suppresses leaf variegation due to var2 loss of function. First leaves are smaller with reduced cell size. Null: Embryo defective; Knockdown: Variegated seedlings-W. Sakamoto-2007 FUNCTION: One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity). {ECO:0000250}. ARA:GQT-1416-MONOMER; 109747 Translation initiation factor IF-2, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation initiation factor activity [GO:0003743] locus:2020427; AT1G17220 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity) Os05g0575300 protein (Fragment),'putative translation initiation factor IF-2, PF04760 (Os05g0575300 protein) (cDNA clone:J013170P17, full insert sequence) Q0DFR3,Q6F366 Q0DFR3_ORYSJ,Q6F366_ORYSJ Os05g0575300 Os05g0575300 OSNPB_050575300,Os05g0575300 OJ1268_B08.15 OSNPB_050575300 ENOG411DTE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Serine/threonine-protein kinase SAPK5 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 5) (RK3 kinase) (stress-activated protein kinase 5) (OsSAPK5) Q7XKA8 SAPK5_ORYSJ SAPK5 RK3 Os04g0691100 LOC_Os04g59450 OsJ_16733 OSJNBb0020J19.1 FUNCTION: May play a role in signal transduction of hyperosmotic response. ENOG411DTE8 ETFA Q9C6I6 ETFA_ARATH Electron transfer flavoprotein subunit alpha, mitochondrial (Alpha-ETF) FUNCTION: The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase). Involved in leucine catabolism and in phytol degradation (By similarity). {ECO:0000250}. R-ATH-611105; 38408 Electron transfer flavoprotein subunit alpha, mitochondrial (Alpha-ETF) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity [GO:0016491]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539] locus:2036467; AT1G50940 electron transfer flavoprotein Electron transfer flavoprotein subunit alpha, mitochondrial (Alpha-ETF) Q75LJ3 ETFA_ORYSJ ETFA Os03g0835400 LOC_Os03g61920 OsJ_012687 OSJNBa0096I06.15 FUNCTION: The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). {ECO:0000250}. ENOG411DYG8 ESP1 Q8VYM7,A0A1P8AMZ0 Q8VYM7_ARATH,A0A1P8AMZ0_ARATH Hydroxyproline-rich glycoprotein family protein (Putative proline-rich protein),Hydroxyproline-rich glycoprotein family protein Early flowering normal stature and leaf morphology.,Two- to three-fold fewer of the endogenous PDS mRNA than in the wild-type plants and 10- to 50-fold higher levels of PDS siRNA. Early flowering-D. Baulcombe-2006 41830,35166 Hydroxyproline-rich glycoprotein family protein (Putative proline-rich protein),Hydroxyproline-rich glycoprotein family protein mRNA 3'-end processing [GO:0031124]; posttranscriptional gene silencing by RNA [GO:0035194]; response to glucose [GO:0009749]; RNA processing [GO:0006396],mRNA 3'-end processing [GO:0031124] locus:2027829; AT1G73840 NA Os05g0513300 protein A0A0P0WPC1 A0A0P0WPC1_ORYSJ Os05g0513300 OSNPB_050513300 ENOG411DYG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynamin family OSJNBa0043A12.19 protein (Os04g0669300 protein) Q7XR66 Q7XR66_ORYSJ Os04g0669300 OsJ_16560 OSJNBa0043A12.19 OSNPB_040669300 ENOG411DYG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411DYGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family GRAS family transcription factor containing protein, expressed (Os11g0705900 protein) (SCARECROW gene regulator, putative) (cDNA clone:001-116-H06, full insert sequence) Q53MB4 Q53MB4_ORYSJ Os11g0705900 LOC_Os11g47900 Os11g0705900 OsJ_34872 OSNPB_110705900 ENOG411DYGS MGN6.19 F4JXC2 F4JXC2_ARATH Nucleic acid-binding protein 41787 Nucleic acid-binding protein locus:2164077; AT5G53800 NA OSJNBa0074L08.19 protein (OSJNBa0081C01.7 protein) (Os04g0530300 protein) Q7X8Y1 Q7X8Y1_ORYSJ Os04g0530300 Os04g0530300 OsJ_15558 OSJNBa0074L08.19 OSJNBa0081C01.7 OSNPB_040530300 ENOG411DYGG PER66 Q9LT91 PER66_ARATH Peroxidase 66 (Atperox P66) (EC 1.11.1.7) (ATP27a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G51890-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35560 Peroxidase 66 (Atperox P66) (EC 1.11.1.7) (ATP27a) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2166508; AT5G51890 peroxidase NA NA NA NA NA NA NA ENOG411DYGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0798600 protein (Fragment) A0A0P0VQN7 A0A0P0VQN7_ORYSJ Os02g0798600 OSNPB_020798600 ENOG411DSK5 LRR2,LRR1 Q6NQP4,Q9FPJ5 LRR2_ARATH,LRR1_ARATH Leucine-rich repeat protein 2 (AtLRR2),Leucine-rich repeat protein 1 (AtLRR1) FUNCTION: Probably involved in plant defense response. {ECO:0000250|UniProtKB:Q9FPJ5}.,FUNCTION: Involved in plant defense response. {ECO:0000269|PubMed:19712067}. 24125,24097 Leucine-rich repeat protein 2 (AtLRR2),Leucine-rich repeat protein 1 (AtLRR1) defense response [GO:0006952],plasma membrane [GO:0005886]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468]; signal transduction [GO:0007165] locus:2178968; AT3G43740,AT5G21090 Somatic embryogenesis receptor kinase Leucine-rich repeat protein 1 (OsLRR1),Os01g0279800 protein (Putative LRR protein) (cDNA clone:006-207-E01, full insert sequence),Os01g0279800 protein Q5VQP7,Q5NBR9,A0A0P0V112 LRR1_ORYSJ,Q5NBR9_ORYSJ,A0A0P0V112_ORYSJ LRR1 Os01g0809300 LOC_Os01g59440 OSNPB_010809300 P0468B07.21,P0003H10.11-1 Os01g0279800 OsJ_01312 OSNPB_010279800,Os01g0279800 OSNPB_010279800 FUNCTION: Involved in plant defense response. {ECO:0000269|PubMed:19712067}. ENOG411DSK2 CLPR2 Q9XJ36 CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic (ClpR2) (nClpP2) DISRUPTION PHENOTYPE: Embryo lethal (Ref.8). Delayed embryogenesis and albino embryos, with seedling development blocked in the cotyledon stage (PubMed:19525416). Under heterotrophic growth conditions, seedlings develop into small albino to virescent seedlings (PubMed:19525416). {ECO:0000269|PubMed:19525416, ECO:0000303|Ref.8}. Yellow/pale-green phenotype and reduced growth. Reduced accumulation of ClpPRS complex. Reduced chloroplast size and thylakoid accumulation. Delayed plant development. Null: Embryo Defective; Cotyledon; Knockdown: Pale green; Dwarf; Late flowering-D. Meinke-2011 FUNCTION: Required for chloroplast development and integrity. Involved in the regulation of plastoglobules formation. {ECO:0000269|PubMed:16461379, ECO:0000269|PubMed:16766689}. 31209 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic (ClpR2) (nClpP2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplastic endopeptidase Clp complex [GO:0009840]; plastoglobule [GO:0010287]; serine-type endopeptidase activity [GO:0004252]; chloroplast organization [GO:0009658] TISSUE SPECIFICITY: Expressed at least in leaves and roots. {ECO:0000269|PubMed:16766689}. locus:2034625; AT1G12410 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit Q5VQ13 Q5VQ13_ORYSJ Os06g0136800 Os06g0136800 OsJ_20046 OSNPB_060136800 P0548D03.22 ENOG411DSK0 Q8L798,A0A1P8ANW8,A0A1P8ANU9,F4IDC8 Q8L798_ARATH,A0A1P8ANW8_ARATH,A0A1P8ANU9_ARATH,F4IDC8_ARATH Inter-alpha-trypsin inhibitor heavy chain-like protein (Uncharacterized protein At1g19110),Inter alpha-trypsin inhibitor, heavy chain-like protein 83018,68453,65460,84534 Inter-alpha-trypsin inhibitor heavy chain-like protein (Uncharacterized protein At1g19110),Inter alpha-trypsin inhibitor, heavy chain-like protein membrane [GO:0016020]; plasma membrane [GO:0005886],plasma membrane [GO:0005886] locus:2011236;,locus:2194002; AT1G19110,AT1G72500 von Willebrand factor type A domain containing protein expressed Os07g0614300 protein (Fragment),Os03g0407000 protein (Fragment),Os11g0115800 protein (Fragment) Q0D4P7,Q0DR89,A0A0P0XY26 Q0D4P7_ORYSJ,Q0DR89_ORYSJ,A0A0P0XY26_ORYSJ Os07g0614300 Os07g0614300 OSNPB_070614300,Os03g0407000 OSNPB_030407000,Os11g0115800 OSNPB_110115800 ENOG411DSKZ KIN10C,MRO11.5 F4KEC6,A0A1R7T392 KN10C_ARATH,A0A1R7T392_ARATH Kinesin-like protein KIN-10C,ATP binding microtubule motor family protein R-ATH-6811434;R-ATH-983189; 76884,77374 Kinesin-like protein KIN-10C,ATP binding microtubule motor family protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2172873; AT5G23910 Kinesin motor domain Kinesin-like protein KIN-10B Q7XMJ2 KN10B_ORYSJ KIN10B Os04g0375900 LOC_Os04g30720 OsJ_14489 OSJNBb0006N15.7 ENOG411DSKT RPN7 Q93Y35 PSMD6_ARATH 26S proteasome non-ATPase regulatory subunit 6 homolog (26S proteasome regulatory subunit RPN7) (AtRPN7) (26S proteasome regulatory subunit S10 homolog) FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 44282 26S proteasome non-ATPase regulatory subunit 6 homolog (26S proteasome regulatory subunit RPN7) (AtRPN7) (26S proteasome regulatory subunit S10 homolog) cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; enzyme regulator activity [GO:0030234]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2126798; AT4G24820 26S proteasome non-atpase regulatory subunit 26S proteasome non-ATPase regulatory subunit 6 (26S proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) (26S proteasome regulatory subunit RPN7),26S proteasome non-ATPase regulatory subunit 6-like (Os01g0974900 protein),Os02g0600100 protein (Putative 26S proteasome non-ATPase regulatory subunit 6 (26S proteasome regulatory particle non-ATPase subunit 7) (OsRPN7)) Q8W425,Q5JL19,Q6K5H9 PSMD6_ORYSJ,Q5JL19_ORYSJ,Q6K5H9_ORYSJ RPN7 Os04g0485000 LOC_Os04g40850 OJ000223_09.5 OsJ_15241 OSJNBa0081L15.15,Os01g0974900 OSNPB_010974900 P0459B04.14,Os02g0600100 Os02g0600100 OJ1791_B03.16 OSNPB_020600100 FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}. ENOG411DSKU SERPIN1 Q9S7T8,A0A1P8API2 SPZX_ARATH,A0A1P8API2_ARATH Serpin-ZX (ArathZx) (AtSerpin1) (Serpin-1),Serine protease inhibitor (SERPIN) family protein FUNCTION: Inhibits metacaspase-9 (MC9) cysteine protease. Functions through cleavage of its reactive center loop and covalent binding to MC9. Involved in the control of elicitor-stimulated programmed cell death (PCD). During infection by the necrotrophic fungal pathogen Botrytis cinerea, functions to protect cells by limiting the PCD-promoting protease RD21A activity that is released from the ER body or vacuole to the cytoplasm (PubMed:23398119). Involved in the control of water stress-induced cell death by limiting the pro-death protease RD21A activity that is released from the vacuole to the cytoplasm (PubMed:26884487). {ECO:0000269|PubMed:17028019, ECO:0000269|PubMed:23398119, ECO:0000269|PubMed:26884487}. 42639,45814 Serpin-ZX (ArathZx) (AtSerpin1) (Serpin-1),Serine protease inhibitor (SERPIN) family protein apoplast [GO:0048046]; cytoplasm [GO:0005737]; extracellular space [GO:0005615]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; serine-type endopeptidase inhibitor activity [GO:0004867],extracellular space [GO:0005615]; peptidase activity [GO:0008233] TISSUE SPECIFICITY: Expressed in root tips. Expressed in siliques (at protein level). {ECO:0000269|PubMed:15815986, ECO:0000269|PubMed:17028019}. locus:2015443; AT1G47710 K13963 serpin B Serpin-ZXB (OrysaZxb),Serpin-ZXA (OrysaZxa),Os03g0610700 protein (Fragment) Q10GX0,Q75H81,Q0DQC3 SPZXB_ORYSJ,SPZXA_ORYSJ,Q0DQC3_ORYSJ Os03g0610800 LOC_Os03g41438 OSJNBb0007E22.10,Os03g0610650 LOC_Os03g41419 OSJNBa0034J04.19 OSJNBb0007E22.7,Os03g0610700 OSNPB_030610700 FUNCTION: Probable serine protease inhibitor. {ECO:0000250}. ENOG411DSKQ DEGP9 Q9FL12 DEGP9_ARATH Protease Do-like 9 (EC 3.4.21.-) FUNCTION: Serine protease that degrades the two-component response regulator ARR4 (PubMed:27274065, PubMed:29180814). Regulates ARR4 stability by targeting ARR4 in the nucleus for degradation. Acts upstream of ARR4 and regulates the activity of ARR4 in cytokinin and light-signaling pathways. ARR4 mediates the cross-talk between light and cytokinin signaling through modulation of the activity of phytochrome B (PubMed:27274065). {ECO:0000269|PubMed:27274065, ECO:0000269|PubMed:29180814}. 3.4.21.- 65153 Protease Do-like 9 (EC 3.4.21.-) chloroplast [GO:0009507]; nucleolus [GO:0005730]; serine-type endopeptidase activity [GO:0004252] locus:2173727; AT5G40200 protease Os06g0234100 protein (Putative DegP2 protease) (cDNA clone:J013035P19, full insert sequence),Os06g0234100 protein (Fragment),Os02g0742500 protein (Fragment) Q67VA4,A0A0P0WUS6,A0A0N7KG29 Q67VA4_ORYSJ,A0A0P0WUS6_ORYSJ,A0A0N7KG29_ORYSJ Os06g0234100 OsJ_20719 OSJNBa0080E19.6 OSJNBb0061B07.21 OSNPB_060234100,Os06g0234100 OSNPB_060234100,Os02g0742500 OSNPB_020742500 ENOG411DSKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH:flavin oxidoreductase / NADH oxidase family Putative 12-oxophytodienoate reductase 10 (EC 1.3.1.-) (OPDA-reductase 10) (OsOPR10),Os01g0369900 protein Q0JMR0,A0A0P0V2I5 OPR10_ORYSJ,A0A0P0V2I5_ORYSJ OPR10 OPR12 Os01g0369900 LOC_Os01g27230,Os01g0369900 OSNPB_010369900 FUNCTION: Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}. ENOG411DSKJ A0A1P8ARB7,F4HVV7,F4HVV6 A0A1P8ARB7_ARATH,F4HVV7_ARATH,F4HVV6_ARATH Transcription regulator 263892,263764,269887 Transcription regulator CCR4-NOT core complex [GO:0030015]; cytosol [GO:0005829]; membrane [GO:0016020]; P-body [GO:0000932]; protein complex scaffold activity [GO:0032947]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288] locus:2205614; AT1G02080 CCR4-NOT transcription complex subunit Os03g0102333 protein,Os10g0556700 protein,Os10g0556600 protein,Os03g0102366 protein (Fragment) A0A0P0VRZ3,A0A0N7KS71,A0A0P0XX27,A0A0P0VRX9 A0A0P0VRZ3_ORYSJ,A0A0N7KS71_ORYSJ,A0A0P0XX27_ORYSJ,A0A0P0VRX9_ORYSJ Os03g0102333 OSNPB_030102333,Os10g0556700 OSNPB_100556700,Os10g0556600 OSNPB_100556600,Os03g0102366 OSNPB_030102366 ENOG411DSKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os02g0720500 protein (Fragment) Q0DY21 Q0DY21_ORYSJ Os02g0720500 Os02g0720500 OSNPB_020720500 ENOG411DSKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSKD Q9C8R6,Q9LZN4,O04342,A0A1P8BB54 Q9C8R6_ARATH,Q9LZN4_ARATH,O04342_ARATH,A0A1P8BB54_ARATH Tropomyosin (Uncharacterized protein T1P2.7),Heat-inducible transcription repressor (Uncharacterized protein At5g01970) (Uncharacterized protein T7H20_20),At2g30530/T6B20.12 (Expressed protein) (Zinc finger CCCH domain protein),Heat-inducible transcription repressor 43335,39569,41215,28687 Tropomyosin (Uncharacterized protein T1P2.7),Heat-inducible transcription repressor (Uncharacterized protein At5g01970) (Uncharacterized protein T7H20_20),At2g30530/T6B20.12 (Expressed protein) (Zinc finger CCCH domain protein),Heat-inducible transcription repressor locus:2198264;,locus:2185098;,locus:2064342; AT1G30050,AT5G01970,AT2G30530 NA Os05g0315200 protein (cDNA clone:001-115-F07, full insert sequence) (cDNA clone:J013087B05, full insert sequence) Q5WMS9 Q5WMS9_ORYSJ Os05g0315200 OJ1308_D01.13 OJ1333_C12.2 OSNPB_050315200 ENOG411DSKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family OSJNba0093F12.12 protein (Os04g0597800 protein),Os04g0597600 protein Q7XNU6,Q0JAI6 Q7XNU6_ORYSJ,Q0JAI6_ORYSJ Os04g0597800 OSJNba0093F12.12 OSNPB_040597800,Os04g0597600 Os04g0597600 OSNPB_040597600 ENOG411DSKA COP1 SUPPRESSOR 1 Q9SY88 Q9SY88_ARATH Nitric oxide synthase-interacting protein homolog FUNCTION: RING-finger E3 ubiquitin-protein ligase that plays an major role in maintaining COP1 homeostasis in darkness. Negatively regulates COP1 protein accumulation by targeting COP1 for ubiquitination and subsequent proteasomal degradation in dark-grown seedlings. Negatively regulates the accumulation of SPA1 protein in the dark. {ECO:0000269|PubMed:24838976}. 35024 Nitric oxide synthase-interacting protein homolog cytoplasm [GO:0005737]; nuclear speck [GO:0016607]; ubiquitin protein ligase activity [GO:0061630]; photomorphogenesis [GO:0009640]; protein destabilization [GO:0031648]; regulation of nitric-oxide synthase activity [GO:0050999] locus:2200898; AT1G61620 Nitric oxide synthase-interacting Os03g0279900 protein (Zinc finger, C3HC4 type family protein, expressed) Q10N73 Q10N73_ORYSJ LOC_Os03g17170 Os03g0279900 OSNPB_030279900 ENOG411E8WD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromatin associated protein KTI12 NA NA NA NA NA NA NA ENOG411DUBF PAP26 Q949Y3 PPA26_ARATH Bifunctional purple acid phosphatase 26 [Includes: Acid phosphatase (EC 3.1.3.2); Peroxidase (EC 1.11.1.7)] Low phosphate levels; Sensitive to phosphate starvation-W. Plaxton-2010 FUNCTION: Metallo-phosphoesterase involved in phosphate metabolism. Acid phosphatase activity with phosphoenolpyruvate, inorganic pyrophosphate, phenyl-phosphate and p-nitrophenyl-phosphate as the most effective substrates. No activity with phytic acid, phosphocholine or bis-p-nitrophenyl-phosphate. Has a peroxidase activity at alkaline pH. {ECO:0000269|PubMed:16963519}. 3.1.3.2; 3.1.3.2; 1.11.1.7 55010 Bifunctional purple acid phosphatase 26 [Includes: Acid phosphatase (EC 3.1.3.2); Peroxidase (EC 1.11.1.7)] cytosol [GO:0005829]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; phosphate ion homeostasis [GO:0055062] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2184657; AT5G34850 Purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2) Q67WU6 Q67WU6_ORYSJ Os06g0643900 OsJ_22134 OSNPB_060643900 P0017B12.5 P0416A11.38 ENOG411DX4M MNC17.12 Q8RY08,F4KHT9 Q8RY08_ARATH,F4KHT9_ARATH AT5g59210/mnc17_100 (Myosin heavy chain-like protein),Myosin heavy chain-like protein 48903,48774 AT5g59210/mnc17_100 (Myosin heavy chain-like protein),Myosin heavy chain-like protein locus:2168439; AT5G59210 NA Expressed protein (Os03g0268100 protein) Q10NJ2 Q10NJ2_ORYSJ Os03g0268100 LOC_Os03g16120 Os03g0268100 OsJ_10271 OSNPB_030268100 ENOG411DX4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Leaf senescence protein-like (Os02g0729200 protein) Q6YWS1 Q6YWS1_ORYSJ OSJNBa0072H09.12 Os02g0729200 OSNPB_020729200 ENOG411DX4I AT3G26370.1 Q9LIN9,A0A1I9LPR6 Q9LIN9_ARATH,A0A1I9LPR6_ARATH O-fucosyltransferase family protein (Pectic arabinogalactan synthesis-related protein) (Uncharacterized protein At3g26370),O-fucosyltransferase family protein FUNCTION: Glycosyltransferase involved in the biosynthesis of pectic type-II arabinogalactans. {ECO:0000269|PubMed:27091363}. MISCELLANEOUS: Overexpression of PAGR positively affects the biosynthesis of type-II arabinogalactans. {ECO:0000269|PubMed:27091363}. 63367,44971 O-fucosyltransferase family protein (Pectic arabinogalactan synthesis-related protein) (Uncharacterized protein At3g26370),O-fucosyltransferase family protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2079281; AT3G26370 DUF246 domain-containing protein At1g04910-like Os02g0158800 protein (Putative auxin-independent growth promoter) (cDNA clone:001-037-G06, full insert sequence) (cDNA clone:J013021B10, full insert sequence),Os06g0687400 protein (Fragment) Q6ETI4,A0A0P0X084,A0A0P0X0M8 Q6ETI4_ORYSJ,A0A0P0X084_ORYSJ,A0A0P0X0M8_ORYSJ Os02g0158800 Os02g0158800 B1103G11.21 OSNPB_020158800,Os06g0687400 OSNPB_060687400 ENOG411DX4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os07g0179500 protein A0A0P0X2W4 A0A0P0X2W4_ORYSJ Os07g0179500 OSNPB_070179500 ENOG411DX4D O64639 Y2559_ARATH Receptor-like serine/threonine-protein kinase At2g45590 (EC 2.7.11.1) 2.7.11.1 75554 Receptor-like serine/threonine-protein kinase At2g45590 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2043629; AT2G45590 receptor-like serine threonine-protein kinase Os10g0187500 protein (Fragment),Os03g0251700 protein,Os07g0586332 protein A0A0N7KRJ1,A0A0P0XSE6,A0A0P0VVK7,A0A0P0X8E8 A0A0N7KRJ1_ORYSJ,A0A0P0XSE6_ORYSJ,A0A0P0VVK7_ORYSJ,A0A0P0X8E8_ORYSJ Os10g0187500 OSNPB_100187500,Os03g0251700 OSNPB_030251700,Os07g0586332 OSNPB_070586332 ENOG411DX4E HSP90-2,HSP90-3,HSP90-1,HSP90-4,HSP81-2 P55737,P51818,P27323,O03986,F4K6B6 HS902_ARATH,HS903_ARATH,HS901_ARATH,HS904_ARATH,F4K6B6_ARATH Heat shock protein 90-2 (AtHSP90.2) (AtHsp90-2) (Heat shock protein 81-2) (Hsp81-2) (Protein EARLY-RESPONSIVE TO DEHYDRATION 8) (Protein LOSS OF RECOGNITION OF AVRRPM1 2) (Protein MUTANT SNC1-ENHANCING 12),Heat shock protein 90-3 (AtHSP90.3) (AtHsp90-3) (HSP81.2) (Heat shock protein 81-3) (Hsp81-3) (Protein MUTANT SNC1-ENHANCING 10),Heat shock protein 90-1 (AtHSP90.1) (AtHsp90-1) (Heat shock protein 81-1) (Hsp81-1) (Heat shock protein 83),Heat shock protein 90-4 (AtHSP90.4) (AtHsp90-4) (Heat shock protein 81-4) (Hsp81-4),Heat shock protein 81-2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. In case of infection, plants are altered in RPM1-mediated disease resistance. {ECO:0000269|PubMed:14592967}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. In case of infection, plants are altered in RPS2-mediated disease resistance. {ECO:0000269|PubMed:14504384}. FUNCTION: Molecular chaperone. Involved in RPM1-mediated resistance. Component of the RPM1/RAR1/SGT1 complex. May stabilize RPM1 and protect it from SGT1-mediated degradation. Associates with RAR1 which may function as co-chaperone. Possesses ATPase activity (PubMed:14592967, PubMed:19487680). In the absence of heat shock, negatively regulates heat-inducible genes by actively suppressing heat shock transcription factor A1D (HSFA1D) function (PubMed:17965410). Involved in the induction of heat shock transcription factor A2 (HSFA2) expression in response to oxidative stress (PubMed:20147301). Required for stomatal closure and modulates transcriptional and physiological responses to abscisic acid (ABA) (PubMed:21586649). Regulates RPP4-mediated temperature-dependent cell death and defense responses (PubMed:24611624). May assist SGT1B in the formation of SCF E3 ubiquitin ligase complexes that target the immune receptors SNC1, RPS2 and RPS4 for degradation, to regulate receptor levels and avoid autoimmunity (PubMed:24889324). {ECO:0000269|PubMed:14592967, ECO:0000269|PubMed:17965410, ECO:0000269|PubMed:19487680, ECO:0000269|PubMed:20147301, ECO:0000269|PubMed:21586649, ECO:0000269|PubMed:24611624, ECO:0000269|PubMed:24889324}.,FUNCTION: Functions as a holding molecular chaperone (holdase) which stabilizes unfolding protein intermediates and rapidly releases them in an active form once stress has abated. Functions as a folding molecular chaperone (foldase) that assists the non-covalent folding of proteins in an ATP-dependent manner (PubMed:23827697). Regulates RPP4-mediated temperature-dependent cell death and defense responses (PubMed:24611624). May assist SGT1B in the formation of SCF E3 ubiquitin ligase complexes that target the immune receptors SNC1, RPS2 and RPS4 for degradation, to regulate receptor levels and avoid autoimmunity (PubMed:24889324). {ECO:0000269|PubMed:23827697, ECO:0000269|PubMed:24611624, ECO:0000269|PubMed:24889324}.,FUNCTION: Functions as a holding molecular chaperone (holdase) which stabilizes unfolding protein intermediates and rapidly releases them in an active form once stress has abated. Functions as a folding molecular chaperone (foldase) that assists the non-covalent folding of proteins in an ATP-dependent manner (PubMed:23827697). Molecular chaperone involved in R gene-mediated disease resistance. Required for full RPS2-mediated resistance through interaction with RAR1. Possesses probably ATPase activity (PubMed:14504384). {ECO:0000269|PubMed:14504384, ECO:0000269|PubMed:23827697}.,FUNCTION: Molecular chaperone which stabilizes unfolding protein intermediates and functions as a folding molecular chaperone that assists the non-covalent folding of proteins in an ATP-dependent manner. {ECO:0000250|UniProtKB:P27323}. R-ATH-3371497;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571;R-ATH-6798695;R-ATH-844456; 80064,80052,80635,80141,83127 Heat shock protein 90-2 (AtHSP90.2) (AtHsp90-2) (Heat shock protein 81-2) (Hsp81-2) (Protein EARLY-RESPONSIVE TO DEHYDRATION 8) (Protein LOSS OF RECOGNITION OF AVRRPM1 2) (Protein MUTANT SNC1-ENHANCING 12),Heat shock protein 90-3 (AtHSP90.3) (AtHsp90-3) (HSP81.2) (Heat shock protein 81-3) (Hsp81-3) (Protein MUTANT SNC1-ENHANCING 10),Heat shock protein 90-1 (AtHSP90.1) (AtHsp90-1) (Heat shock protein 81-1) (Hsp81-1) (Heat shock protein 83),Heat shock protein 90-4 (AtHSP90.4) (AtHsp90-4) (Heat shock protein 81-4) (Hsp81-4),Heat shock protein 81-2 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; unfolded protein binding [GO:0051082]; chaperone-mediated protein folding [GO:0061077]; defense response to bacterium, incompatible interaction [GO:0009816],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; cellular response to calcium ion [GO:0071277]; chaperone-mediated protein complex assembly [GO:0051131]; innate immune response [GO:0045087]; protein folding [GO:0006457]; response to heat [GO:0009408],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; chaperone-mediated protein folding [GO:0061077]; defense response to bacterium, incompatible interaction [GO:0009816],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to stress [GO:0006950],cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; mRNA binding [GO:0003729]; unfolded protein binding [GO:0051082]; chaperone-mediated protein complex assembly [GO:0051131]; defense response [GO:0006952]; flower development [GO:0009908]; heat acclimation [GO:0010286]; leaf development [GO:0048366]; negative regulation of seed germination [GO:0010187]; protein folding [GO:0006457]; protein stabilization [GO:0050821]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; stomatal closure [GO:0090332] DEVELOPMENTAL STAGE: Expressed in pollen during pollen development, germination and tube growth. Expressed during embryo development and young seedling growth. {ECO:0000269|PubMed:15582930}. TISSUE SPECIFICITY: Present in all tissues. Most abundantly expressed in roots followed by floral bud clusters, flowers and young fruits.,TISSUE SPECIFICITY: Present in all tissues. Most abundantly expressed in roots and floral bud clusters followed by flowers, young fruits and rosette leaves.,TISSUE SPECIFICITY: Expressed constitutively in roots only. After heat treatment, expressed in most tissues. Levels also increase after heavy metal treatment. locus:2161790;,locus:2161775;,locus:2161815; AT5G56030,AT5G56010,AT5G52640,AT5G56000 Heat Shock Protein Heat shock protein 81-2 (HSP81-2) (Heat shock protein 90),Heat shock protein 81-3 (HSP81-3) (Gravity-specific protein GSC 381),Heat shock protein 81-1 (HSP81-1) (Heat shock protein 82),Os04g0107900 protein (Fragment),Os09g0482400 protein (Os09g0482600 protein) (Fragment),Os09g0534600 protein,Os08g0500700 protein (Fragment) Q69QQ6,Q07078,Q0J4P2,C7J151,A0A0P0XNB2,A0A0P0XPT3,A0A0P0W604,A0A0P0W5Z1,A0A0P0W643,A0A0P0XIF8 HSP82_ORYSJ,HSP83_ORYSJ,HSP81_ORYSJ,C7J151_ORYSJ,A0A0P0XNB2_ORYSJ,A0A0P0XPT3_ORYSJ,A0A0P0W604_ORYSJ,A0A0P0W5Z1_ORYSJ,A0A0P0W643_ORYSJ,A0A0P0XIF8_ORYSJ HSP81-2 HSP90 Os09g0482100 LOC_Os09g30418 P0463D04.32,HSP81-3 Os09g0482400 P0463D04.35; Os09g0482600 LOC_Os09g30418,HSP81-1 HSP82 Os08g0500700 LOC_Os08g39140 OJ1118_A06.20-1 OJ1345_D02.4-1,Os04g0107900 Os04g0107900 OSNPB_040107900,Os09g0482400 Os09g0482600 OSNPB_090482400 OSNPB_090482600,Os09g0534600 OSNPB_090534600,Os04g0107900 OSNPB_040107900,Os08g0500700 OSNPB_080500700 FUNCTION: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function (By similarity). {ECO:0000250}.,FUNCTION: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function. {ECO:0000250|UniProtKB:P07900}. ENOG411DX4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF547 Os07g0123350 protein (Os07g0123400 protein),Os03g0769000 protein (Fragment) C7J4M4,A0A0P0W3J2 C7J4M4_ORYSJ,A0A0P0W3J2_ORYSJ Os07g0123400 Os07g0123350 OSNPB_070123400,Os03g0769000 OSNPB_030769000 ENOG411DX4A EDM2 F4K3G5 EDM2_ARATH Protein ENHANCED DOWNY MILDEW 2 DISRUPTION PHENOTYPE: Strong reduction in RPP7 levels due to altered H3K9me2 levels in COPIA-R7 (PubMed:23940361, PubMed:17253987). Impaired resistance against the Hyaloperonospora arabidopsidis isolate Hiks1 (PubMed:17253987). Abnormal leaf development and flowering time (PubMed:20840782, PubMed:20149132). Enhanced accumulation of FLC (PubMed:23976921). Altered silencing states of several transposons associated with reduced histone methylation at H3K27me1 and H3K9me2 (PubMed:23609044). Hypermethylation of DNA at CHG sites (PubMed:24248388). Reduced fertility (PubMed:23609044). {ECO:0000269|PubMed:17253987, ECO:0000269|PubMed:20149132, ECO:0000269|PubMed:20840782, ECO:0000269|PubMed:23609044, ECO:0000269|PubMed:23940361, ECO:0000269|PubMed:23976921, ECO:0000269|PubMed:24248388}. Susceptible to Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). Susceptible to fungal infection-T. Eulgen-2007 FUNCTION: Cellular antisilencing factor and regulator of genome DNA methylation patterns involved in the regulation of chromatin states. Together with SUVH4, monitors repressive epigenetic marks H3K27me1, H3K9me2, and prevents DNA-methylation at CHG sites, affecting especially the expression of transposons and developmentally important genes (PubMed:21830950, PubMed:23609044, PubMed:24248388). Regulates alternative RNA processing such as distal 3' polyadenylation by intronic heterochromatin (PubMed:24248388). Transcription factor that binds DNA and contributes to transcriptional transposable element (TE) silencing by modulating levels of the repressive post-translational histone modifications (PHM) H3K9me2 (PubMed:23609044). In cv. Columbia, required for RPP7-dependent disease resistance against the Hyaloperonospora arabidopsidis isolate Hiks1, by promoting levels of RPP7 via alternative polyadenylation (APA), resulting from cooption of epigenetic information at the TE insertion locus COPIA-R7 (PubMed:23940361, PubMed:17253987, PubMed:20149132). Regulates development processes such as the formation of leaf pavement cells, leaf expansion, fertility and flowering (PubMed:20840782, PubMed:20149132, PubMed:23609044). Prevents FLC accumulation to control flowering (PubMed:23976921). {ECO:0000269|PubMed:17253987, ECO:0000269|PubMed:20149132, ECO:0000269|PubMed:20840782, ECO:0000269|PubMed:21830950, ECO:0000269|PubMed:23609044, ECO:0000269|PubMed:23940361, ECO:0000269|PubMed:23976921, ECO:0000269|PubMed:24248388}. 146788 Protein ENHANCED DOWNY MILDEW 2 nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; covalent chromatin modification [GO:0016569]; defense response to fungus [GO:0050832]; heterochromatin maintenance [GO:0070829]; leaf pavement cell development [GO:0090436]; positive regulation of chromatin silencing [GO:0031937]; positive regulation of flower development [GO:0009911]; positive regulation of histone H3-K27 methylation [GO:0061087]; positive regulation of histone H3-K9 dimethylation [GO:1900111]; regulation of DNA methylation [GO:0044030]; regulation of leaf development [GO:2000024]; regulation of mRNA polyadenylation [GO:1900363]; regulation of transcription, DNA-templated [GO:0006355]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2173857; AT5G55390 NA Os08g0337300 protein,Os08g0337300 protein (Fragment),Os01g0510500 protein (Fragment) Q6Z978,Q6Z977,A0A0P0XEV0,A0A0P0V356 Q6Z978_ORYSJ,Q6Z977_ORYSJ,A0A0P0XEV0_ORYSJ,A0A0P0V356_ORYSJ P0683E12.22-1 Os08g0337300 P0689D06.26-1 OSNPB_080337300,P0683E12.22-2 P0689D06.26-2 Os08g0337300 OSNPB_080337300,Os08g0337300 OSNPB_080337300,Os01g0510500 OSNPB_010510500 ENOG411DX4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cinnamyl alcohol Probable cinnamyl alcohol dehydrogenase 8B (OsCAD8B) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 8C (OsCAD8C) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 9 (OsCAD9) (EC 1.1.1.195) Q6ERW9,Q6ERW7,Q10PS6 CAD8B_ORYSJ,CAD8C_ORYSJ,CADH9_ORYSJ CAD8B Os09g0400000 LOC_Os09g23540 P0435D08.29 P0650H04.11,CAD8C Os09g0400300 LOC_Os09g23550 OsJ_29283 P0435D08.33 P0650H04.15,CAD9 Os03g0223200 LOC_Os03g12270 OJ1743A09.18 FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000250|UniProtKB:O49482}. ENOG411DX4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EXOIII Os05g0102400 protein A0A0P0WH57 A0A0P0WH57_ORYSJ Os05g0102400 OSNPB_050102400 ENOG411DX4X OCT1 Q9CAT6 OCT1_ARATH Organic cation/carnitine transporter 1 (AtOCT1) DISRUPTION PHENOTYPE: Reduced sensitivity to carnitine and high degree of root branching. {ECO:0000269|PubMed:17521409}. FUNCTION: High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Regulates lateral root development. {ECO:0000269|PubMed:17521409}. R-ATH-112311;R-ATH-181430;R-ATH-197264;R-ATH-200425;R-ATH-2161517;R-ATH-442660;R-ATH-549127;R-ATH-561048; 59660 Organic cation/carnitine transporter 1 (AtOCT1) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carnitine transmembrane transporter activity [GO:0015226]; organic anion transmembrane transporter activity [GO:0008514]; cadaverine transport [GO:0015839]; leaf senescence [GO:0010150] DEVELOPMENTAL STAGE: In flowers, expressed in anthers, sepals, petals and peduncles. Accumulates during germination in embryos, reaching a maximum during the radicle emergence. In seedlings, restricted to the vasculature, with highest levels in the collar and the root. Later present in both elongation and root hair zones in roots. Also present in root cap columella. Detected before and during lateral root initiation and emergence and thereafter remained in vascular tissues of each lateral root. {ECO:0000269|PubMed:17521409}. TISSUE SPECIFICITY: Expressed in vascular tissues and at sites of lateral root formation. Mostly present in floral buds, flowers and immature siliques. {ECO:0000269|PubMed:17521409}. locus:2197244; AT1G73220 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411DX4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Os01g0920800 protein,OJ1485_B09.2 protein (Os01g0921000 protein) (Regulatory protein-like) (cDNA clone:J023113H16, full insert sequence) A3A103,Q8RUF2 A3A103_ORYSJ,Q8RUF2_ORYSJ Os01g0920800 OsJ_04574 OSNPB_010920800,Os01g0921000 OJ1485_B09.2 Os01g0921000 B1793G04.15 OsJ_04575 OSNPB_010921000 P0678F11.42 ENOG411DX4W TIG Q8S9L5 TIG_ARATH Trigger factor-like protein TIG, Chloroplastic (EC 5.2.1.8) (Immunophilin TIG) (Peptidyl-prolyl cis-trans isomerase TIG) (PPIase TIG) (Rotamase) FUNCTION: Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (By similarity). {ECO:0000250}. 5.2.1.8 61734 Trigger factor-like protein TIG, Chloroplastic (EC 5.2.1.8) (Immunophilin TIG) (Peptidyl-prolyl cis-trans isomerase TIG) (PPIase TIG) (Rotamase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; protein transport [GO:0015031] locus:2161640; AT5G55220 Trigger factor-like Os06g0308000 protein (Trigger factor-like) (cDNA clone:J013071B03, full insert sequence) Q5Z4M6 Q5Z4M6_ORYSJ Os06g0308000 Os06g0308000 OsJ_21100 OSNPB_060308000 P0417E03.26 ENOG411DX4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR2 (OsRR2) Q6YVX7 ORR2_ORYSJ RR2 Os02g0557800 LOC_Os02g35180 OSJNBb0038F20.11 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411DX4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYND finger family protein MYND finger family protein, expressed (Os11g0488900 protein) Q2R448 Q2R448_ORYSJ Os11g0488900 LOC_Os11g29710 OSNPB_110488900 ENOG411DX4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0231400 protein (Fragment),F-box domain containing protein-like (Os08g0344900 protein),Os08g0363000 protein (cDNA clone:002-108-A06, full insert sequence),Os03g0113200 protein (Fragment) Q0ITP3,Q84QU5,Q84UM0,Q0DVT9 Q0ITP3_ORYSJ,Q84QU5_ORYSJ,Q84UM0_ORYSJ,Q0DVT9_ORYSJ Os11g0231400 OSNPB_110231400,P0410E11.109 Os08g0344900 OsJ_26985 OSNPB_080344900,B1027A11.153 Os08g0363000 OJ1118_F01.3 OSNPB_080363000,Os03g0113200 OSNPB_030113200 ENOG411DX4S B9UY99,Q94C36,Q93YV2,A0A1P8AVC0,F4JB32 B9UY99_ARATH,Q94C36_ARATH,Q93YV2_ARATH,A0A1P8AVC0_ARATH,F4JB32_ARATH At3g13062 (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein (Putative membrane related protein CP5),Polyketide cyclase/dehydrase and lipid transport superfamily protein 49240,45310,45324,42113,46264 At3g13062 (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein (Putative membrane related protein CP5),Polyketide cyclase/dehydrase and lipid transport superfamily protein integral component of membrane [GO:0016021]; lipid binding [GO:0008289] locus:505006338;,locus:2012080; AT3G13062,AT1G55960 Inherit from KOG: StAR-related lipid transfer (START) domain containing NA NA NA NA NA NA NA ENOG411DX49 T20K12.70 Q9M2E7 Q9M2E7_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T20K12.70) 87739 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T20K12.70) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2098901; AT3G61170 repeat-containing protein NA NA NA NA NA NA NA ENOG411DX46 COV1,LCV1 F4IUE7,Q8VY49,A0A1P8AZ44 COV1_ARATH,LCV1_ARATH,A0A1P8AZ44_ARATH Protein CONTINUOUS VASCULAR RING 1,Protein LIKE COV 1,CONTINUOUS VASCULAR RING protein (DUF502) Slow growth; Semi-dwarf; Slightly twisted leaves; Short, wrinkled siliques; Severely increased vascular tissue in inflorescence stems-S. Turner-2003 FUNCTION: Involved in the regulation of vascular patterning in the stem, probably by negatively regulating the differentiation of vascular tissue. {ECO:0000269|PubMed:12668628}. 29674,28379 Protein CONTINUOUS VASCULAR RING 1,Protein LIKE COV 1,CONTINUOUS VASCULAR RING protein (DUF502) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; stem vascular tissue pattern formation [GO:0010222],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Mostly expressed in flowers and stems, and, to a lower extent, in roots and leaves. {ECO:0000269|PubMed:12668628}.,TISSUE SPECIFICITY: Expressed at low levels in flowers, stems, roots and leaves. {ECO:0000269|PubMed:12668628}. locus:2061668;,locus:2061654; AT2G20120,AT2G20130 Protein of unknown function (DUF502) COV-like protein 1 (Os05g0529000 protein) (cDNA clone:001-024-D01, full insert sequence),Os02g0269000 protein Q65XC4,Q6ERT7 Q65XC4_ORYSJ,Q6ERT7_ORYSJ Os05g0529000 OJ1187_E11.15 OsJ_19290 OSNPB_050529000,Os02g0269000 Os02g0269000 OSNPB_020269000 P0693E08.23 ENOG411DX47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pept_C1 NA NA NA NA NA NA NA ENOG411DX40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain OSJNBa0010H02.20 protein (Os04g0554200 protein),Os04g0554200 protein (cDNA clone:J013070M12, full insert sequence) Q7XT32,B7ECC2 Q7XT32_ORYSJ,B7ECC2_ORYSJ Os04g0554200 Os04g0554200 OsJ_15722 OSJNBa0010H02.20 OSNPB_040554200,Os04g0554200 OSNPB_040554200 ENOG411DX41 PCMP-E49 Q9ZUT5 PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310 73343 Pentatricopeptide repeat-containing protein At2g37310 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2049726; AT2G37310 Pentatricopeptide repeat-containing protein Os03g0283500 protein (Pentatricopeptide, putative, expressed) (Putative PPR repeat containing protein) (cDNA clone:J033123I23, full insert sequence) Q8H8U1 Q8H8U1_ORYSJ LOC_Os03g17510 Os03g0283500 OSNPB_030283500 ENOG411DU6W Q9FWX0,F4IC59 Q9FWX0_ARATH,F4IC59_ARATH Aldolase superfamily protein (At1g12230) (Expressed protein) (T28K15.4 protein),Aldolase superfamily protein ARA:AT1G12230-MONOMER; R-ATH-163754;R-ATH-71336; 43994,46527 Aldolase superfamily protein (At1g12230) (Expressed protein) (T28K15.4 protein),Aldolase superfamily protein cytoplasm [GO:0005737]; sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity [GO:0004801]; carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt [GO:0006098],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity [GO:0004801]; zinc ion binding [GO:0008270]; carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt [GO:0006098] locus:2202007; AT1G12230 transaldolase EC 2.2.1.2 Os08g0154300 protein (cDNA clone:J033038K01, full insert sequence),Os08g0154300 protein (Putative transaldolase ToTAL2) B7ERR5,Q84ZL6 B7ERR5_ORYSJ,Q84ZL6_ORYSJ Os08g0154300 OSNPB_080154300,OJ1066_B03.121-1 Os08g0154300 OsJ_26073 OSNPB_080154300 ENOG411DU6V O04251,A0A1P8B350 Y4211_ARATH,A0A1P8B350_ARATH BRCT domain-containing protein At4g02110,Transcription coactivator 145927,132054 BRCT domain-containing protein At4g02110,Transcription coactivator locus:2132198; AT4G02110 BRCT BRCA1 C Terminus domain containing protein, expressed (Os03g0304400 protein) Q10ML5 Q10ML5_ORYSJ Os03g0304400 LOC_Os03g19190 Os03g0304400 OsJ_10544 OSNPB_030304400 ENOG411DU6U Q9LX20 ASPL1_ARATH Aspartic proteinase-like protein 1 (EC 3.4.23.-) 3.4.23.- 57961 Aspartic proteinase-like protein 1 (EC 3.4.23.-) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2184138; AT5G10080 aspartic proteinase-like protein Aspartyl protease-like (Os02g0751100 protein) Q6Z8K1 Q6Z8K1_ORYSJ Os02g0751100 OsJ_08401 OSNPB_020751100 P0431B06.25 ENOG411DU6T CYP716A1,CYP716A2 Q9LVY7,Q9LVY3,A0A1R7T3C0 Q9LVY7_ARATH,Q9LVY3_ARATH,A0A1R7T3C0_ARATH Cytochrome P450, family 716, subfamily A, polypeptide 1 (Cytochrome P450-like),Cytochrome P450, family 716, subfamily A, polypeptide 2 (Similarity to cytochrome P450),Cytochrome P450, family 716, subfamily A, polypeptide 1 ARA:AT5G36110-MONOMER;,ARA:AT5G36140-MONOMER; R-ATH-211916;R-ATH-5365859; 54851,36155,44150 Cytochrome P450, family 716, subfamily A, polypeptide 1 (Cytochrome P450-like),Cytochrome P450, family 716, subfamily A, polypeptide 2 (Similarity to cytochrome P450),Cytochrome P450, family 716, subfamily A, polypeptide 1 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2158961;,locus:2158916; AT5G36110,AT5G36140 cytochrome P450 Os07g0518500 protein (Putative taxane 10-beta-hydroxylase(5-alpha-taxadienol-10-beta-hydroxylase)) (cDNA clone:J013091E24, full insert sequence),Os07g0518500 protein (Putative taxane 10-beta-hydroxylase(5-alpha-taxadienol-10-beta-hydroxylase)),Os07g0520100 protein,Os07g0517900 protein (Fragment),Os07g0518500 protein,Os07g0519300 protein (Fragment),Os07g0519600 protein,Os07g0519100 protein Q7EZ51,Q84LG7,B9FXJ6,A0A0P0X6L5,A0A0P0X741,A0A0P0X743,A0A0P0X6Q2,A0A0P0X7H0 Q7EZ51_ORYSJ,Q84LG7_ORYSJ,B9FXJ6_ORYSJ,A0A0P0X6L5_ORYSJ,A0A0P0X741_ORYSJ,A0A0P0X743_ORYSJ,A0A0P0X6Q2_ORYSJ,A0A0P0X7H0_ORYSJ OSJNBa0036M16.135-2 Os07g0518500 OSNPB_070518500,OSJNBa0036M16.135-1 Os07g0518500 OsJ_24469 OSNPB_070518500,Os07g0520100 OsJ_24475 OSNPB_070520100,Os07g0517900 OSNPB_070517900,Os07g0518500 OSNPB_070518500,Os07g0519300 OSNPB_070519300,Os07g0519600 OSNPB_070519600,Os07g0519100 OSNPB_070519100 ENOG411DU6S T1B9.3 Q9SFW0,B3H7H1 Q9SFW0_ARATH,B3H7H1_ARATH AT3G07300 protein (At3g07300) (NagB/RpiA/CoA transferase-like superfamily protein) (Putative translation initiation factor EIF-2B beta subunit),AT3G07300 protein (NagB/RpiA/CoA transferase-like superfamily protein) R-ATH-72731; 43599,43800 AT3G07300 protein (At3g07300) (NagB/RpiA/CoA transferase-like superfamily protein) (Putative translation initiation factor EIF-2B beta subunit),AT3G07300 protein (NagB/RpiA/CoA transferase-like superfamily protein) transferase activity [GO:0016740]; translation initiation factor activity [GO:0003743],cytoplasm [GO:0005737]; transferase activity [GO:0016740]; cellular metabolic process [GO:0044237] locus:2079596; AT3G07300 translation initiation factor Os10g0392700 protein (Fragment) A0A0P0XUJ0 A0A0P0XUJ0_ORYSJ Os10g0392700 OSNPB_100392700 ENOG411DU6R F4JUQ2 KCAI_ARATH KIN14B-interacting protein At4g14310 FUNCTION: Might be involved in division plane determination. {ECO:0000305|PubMed:20706207}. 100474 KIN14B-interacting protein At4g14310 cell wall [GO:0005618]; cytoplasm [GO:0005737]; cell cycle [GO:0007049]; cell division [GO:0051301] locus:2129610; AT4G14310 NA Os02g0809900 protein (Fragment) Q0DWK8 Q0DWK8_ORYSJ Os02g0809900 Os02g0809900 OSNPB_020809900 ENOG411DU6Q Q9SIV6,O82184,F4IJS1,F4IKD6 Q9SIV6_ARATH,O82184_ARATH,F4IJS1_ARATH,F4IKD6_ARATH Coiled-coil 90B-like protein (DUF1640) (Expressed protein) (Uncharacterized protein At2g16460),At2g35070/T4C15.26 (Expressed protein) (Transmembrane protein) (Uncharacterized protein At2g35065/At2g35070),Transmembrane protein, putative (DUF1640),Coiled-coil 90B-like protein (DUF1640) Complete male gametophyte defective; Female gametophyte defective-S. McCormick-2009 25790,17652,17348,19499 Coiled-coil 90B-like protein (DUF1640) (Expressed protein) (Uncharacterized protein At2g16460),At2g35070/T4C15.26 (Expressed protein) (Transmembrane protein) (Uncharacterized protein At2g35065/At2g35070),Transmembrane protein, putative (DUF1640),Coiled-coil 90B-like protein (DUF1640) mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; metal ion binding [GO:0046872],integral component of membrane [GO:0016021]; pollen development [GO:0009555]; pollen tube development [GO:0048868],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] locus:2042644;,locus:2063404;,locus:2063379; AT2G16460,AT2G35070,AT2G35090 protein FMP32 mitochondrial-like Os06g0713100 protein (cDNA clone:J023132D01, full insert sequence) Q5Z5X5 Q5Z5X5_ORYSJ Os06g0713100 Os06g0713100 OsJ_22641 OSNPB_060713100 P0712G01.15 ENOG411DU6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Os05g0134400 protein,Peroxidase (EC 1.11.1.7) Q0DKZ2,Q6AVZ8,A0A0P0WHP0 Q0DKZ2_ORYSJ,Q6AVZ8_ORYSJ,A0A0P0WHP0_ORYSJ Os05g0134400 Os05g0134400 OSNPB_050134400,Os05g0134400 prx65 OSNPB_050134400 P0519E07.5,Os05g0134800 OSNPB_050134800 ENOG411DU6Z Q944S5,A0A1I9LSL4 Q944S5_ARATH,A0A1I9LSL4_ARATH AT3g28670/MZN14_13 (At3g28670) (Oxidoreductase, zinc-binding dehydrogenase family protein) (Uncharacterized protein At3g28670),Oxidoreductase, zinc-binding dehydrogenase family protein 54003,59999 AT3g28670/MZN14_13 (At3g28670) (Oxidoreductase, zinc-binding dehydrogenase family protein) (Uncharacterized protein At3g28670),Oxidoreductase, zinc-binding dehydrogenase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2095497; AT3G28670 protein odr-4 homolog Os08g0101400 protein,Os10g0188900 protein (Fragment) B9FYM4,A0A0P0XT73 B9FYM4_ORYSJ,A0A0P0XT73_ORYSJ Os08g0101400 OsJ_25720 OSNPB_080101400,Os10g0188900 OSNPB_100188900 ENOG411DU6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase Os04g0679200 protein (Fragment) A0A0P0WGE5 A0A0P0WGE5_ORYSJ Os04g0679200 OSNPB_040679200 ENOG411DU6X MET1 Q94BS2 MET1_ARATH Protein MET1, chloroplastic (PDZ domain, K-box domain, and TPR region containing protein) DISRUPTION PHENOTYPE: Conditional reduced growth in fluctuating white light intensities conditions, with near complete blockage in photosystem II (PSII) supercomplex formation, and concomitant increase of unassembled psbC (CP43), thus leading to reduced PSII efficiency and biomass accumulation. Increased sensitivity to high light conditions, associated with the loss of PSII supercomplexes and accelerated D1 degradation. {ECO:0000269|PubMed:25587003}. FUNCTION: Involved in photosystem II supercomplex formation and repair, probably acting as a psbB/psbC chaperone on the stromal side of the membrane. {ECO:0000269|PubMed:25587003}. 37410 Protein MET1, chloroplastic (PDZ domain, K-box domain, and TPR region containing protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; chromoplast stroma [GO:0009575]; extrinsic component of thylakoid membrane [GO:0035448]; photosystem II [GO:0009523]; thylakoid [GO:0009579]; photosynthesis [GO:0015979]; photosystem II assembly [GO:0010207]; photosystem II repair [GO:0010206]; response to high light intensity [GO:0009644]; response to light stimulus [GO:0009416]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in leaves (at protein level) (PubMed:15914918). Mostly expressed in leaves, stems and siliques, and, to a lower extent, in flowers and senescent leaves, but not present in roots (at protein level) (PubMed:25587003). {ECO:0000269|PubMed:15914918, ECO:0000269|PubMed:25587003}. locus:2193844; AT1G55480 NA Os07g0171100 protein (Putative SHOOT1 protein),Os07g0171100 protein (Putative SHOOT1 protein) (cDNA clone:001-045-E07, full insert sequence) Q69LC1,Q69LC0 Q69LC1_ORYSJ,Q69LC0_ORYSJ P0496D04.12-1 Os07g0171100 OSJNBa0050F10.39-1 OSNPB_070171100,P0496D04.12-2 Os07g0171100 OsJ_23259 OSJNBa0050F10.39-2 OSNPB_070171100 ENOG411DU6F WLIM2B,WLIN2A,WLIM2b Q9M047,O04193,F4IY33 WLI2B_ARATH,WLI2A_ARATH,F4IY33_ARATH LIM domain-containing protein WLIM2b (Widely-expressed LIM protein 2B),LIM domain-containing protein WLIM2a (Widely-expressed LIM protein 2) (AtWLIM2),GATA type zinc finger transcription factor family protein FUNCTION: Binds to actin filaments and promotes cross-linking into thick bundles. Has an actin-stabilizing activity. The actin regulatory activities are not regulated by pH and [Ca(2+)]. {ECO:0000269|PubMed:20817848}. MISCELLANEOUS: Cross-links actin with a constant of dissociation of 0.5 uM. {ECO:0000269|PubMed:20817848}.,MISCELLANEOUS: Cross-links actin with a constant of dissociation of 0.4 uM. {ECO:0000269|PubMed:20817848}. 21664,21901,14925 LIM domain-containing protein WLIM2b (Widely-expressed LIM protein 2B),LIM domain-containing protein WLIM2a (Widely-expressed LIM protein 2) (AtWLIM2),GATA type zinc finger transcription factor family protein cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin filament binding [GO:0051015]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; actin filament bundle assembly [GO:0051017],cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin filament binding [GO:0051015]; metal ion binding [GO:0046872]; actin filament bundle assembly [GO:0051017],metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Barely detected in pollen. {ECO:0000269|PubMed:20817848}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Barely detected in pollen. {ECO:0000269|PubMed:11085265, ECO:0000269|PubMed:20817848}. locus:2079006;,locus:2061171; AT3G55770,AT2G39900 LIM domain-containing protein NA NA NA NA NA NA NA ENOG411DU6E BGAL17 Q93Z24,A0A1P8AQM6 BGA17_ARATH,A0A1P8AQM6_ARATH Beta-galactosidase 17 (Lactase 17) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) ARA:AT1G72990-MONOMER; R-ATH-1660662;R-ATH-2022857;R-ATH-2024096;R-ATH-6798695; 3.2.1.23 78640,72622 Beta-galactosidase 17 (Lactase 17) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) apoplast [GO:0048046]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975],beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Ubiquitous, with higher expression levels in roots and siliques. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:17466346}. locus:2032667; AT1G72990 beta-galactosidase Beta-galactosidase 8 (Lactase 8) (EC 3.2.1.23) Q0DGD7 BGAL8_ORYSJ Os05g0539400 LOC_Os05g46200 OsJ_19375 OSJNBa0052K01.15 ENOG411DU6D PCMP-E52 Q9SVA5 PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 93794 Pentatricopeptide repeat-containing protein At4g39530 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2122551; AT4G39530 Pentatricopeptide repeat-containing protein Os08g0340900 protein (PPR-repeat protein-like) (cDNA clone:J013145H04, full insert sequence) Q6Z0F9 Q6Z0F9_ORYSJ Os08g0340900 OJ1790_D02.8 OSJNBa0062G05.28 OSNPB_080340900 ENOG411DU6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os04g0226340 protein,Os04g0226666 protein (Fragment) A0A0P0W7W1,A0A0P0W7I1 A0A0P0W7W1_ORYSJ,A0A0P0W7I1_ORYSJ Os04g0226340 OSNPB_040226340,Os04g0226666 OSNPB_040226666 ENOG411DU6B MQK4.27 Q8GUJ0,A0A1P8BA46 Q8GUJ0_ARATH,A0A1P8BA46_ARATH At5g16520 (Transmembrane protein) (Uncharacterized protein At5g16520),Transmembrane protein 68313,50553 At5g16520 (Transmembrane protein) (Uncharacterized protein At5g16520),Transmembrane protein integral component of membrane [GO:0016021] locus:2171377; AT5G16520 NA Os01g0100500 protein (p0402A09.1 protein) Q93VG6 Q93VG6_ORYSJ Os01g0100500 P0402A09.1 Os01g0100500 OsJ_00005 OSJNOa264G09.4 OSNPB_010100500 P0672D08.4 ENOG411DU6A LPXC1,LPXC4,LPXC2,LPXC3,LPXC5 F4IAT8,P0DKB9,P0DKB7,P0DKB8,F4IAW1 LPXC1_ARATH,LPXC4_ARATH,LPXC2_ARATH,LPXC3_ARATH,LPXC5_ARATH Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 1) (EC 3.5.1.108) (Protein LIPID X C1) (AtLpxC1) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 1),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 4, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 4) (EC 3.5.1.108) (Protein LIPID X C4) (AtLpxC4) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 4),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 2) (EC 3.5.1.108) (Protein LIPID X C2) (AtLpxC2) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 2),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 3, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 3) (EC 3.5.1.108) (Protein LIPID X C3) (AtLpxC3) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 3),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 5, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 5) (EC 3.5.1.108) (Protein LIPID X C5) (AtLpxC5) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 5) FUNCTION: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses (Potential). {ECO:0000305}. MISCELLANEOUS: Plants silencing LPXC do not have altered morphology compared to wild-type plants when grown under normal growth conditions, but they do not accumulate 2,3-diacylglucosamine-1-phosphate. {ECO:0000305|PubMed:21709257}. PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 2/6. {ECO:0000269|PubMed:21709257}. 3.5.1.108 35717 Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 1) (EC 3.5.1.108) (Protein LIPID X C1) (AtLpxC1) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 1),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 4, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 4) (EC 3.5.1.108) (Protein LIPID X C4) (AtLpxC4) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 4),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 2) (EC 3.5.1.108) (Protein LIPID X C2) (AtLpxC2) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 2),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 3, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 3) (EC 3.5.1.108) (Protein LIPID X C3) (AtLpxC3) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 3),Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 5, mitochondrial (UDP-3-O-acyl-GlcNAc deacetylase 5) (EC 3.5.1.108) (Protein LIPID X C5) (AtLpxC5) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase 5) mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity [GO:0008759]; UDP-3-O-acyl-N-acetylglucosamine deacetylase activity [GO:0103117]; lipid A biosynthetic process [GO:0009245]; lipid X metabolic process [GO:2001289] locus:1005716744; AT1G24793,AT1G25145,AT1G24880,AT1G25054,AT1G25210 UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine Os03g0223900 protein (UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed) (cDNA clone:J013071N01, full insert sequence) Q10PS1 Q10PS1_ORYSJ LOC_Os03g12320 Os03g0223900 OSNPB_030223900 ENOG411DU6N Q9LEU9 Q9LEU9_ARATH At5g10910/T30N20_180 (MraW methylase family protein) (Uncharacterized protein T30N20_180) 48619 At5g10910/T30N20_180 (MraW methylase family protein) (Uncharacterized protein T30N20_180) rRNA (cytosine-N4-)-methyltransferase activity [GO:0071424]; rRNA base methylation [GO:0070475] locus:2183815; AT5G10910 ribosomal RNA small subunit methyltransferase Os02g0137600 protein (Putative methyltransferase) Q6YXY1 Q6YXY1_ORYSJ Os02g0137600 OSJNBa0026E05.9 OSJNBa0081C13.33 OSNPB_020137600 ENOG411DU6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LETM1-like protein NA NA NA NA NA NA NA ENOG411DU6J Q84K90 Q84K90_ARATH Chromosome-associated kinesin (Uncharacterized protein At4g26410) FUNCTION: Required for some glucose-regulated gene expression, being a physical connection between RGS1 and HXK1 in sugar signaling. Prevents roots and inflorecences growth. {ECO:0000269|PubMed:26528314}. 29201 Chromosome-associated kinesin (Uncharacterized protein At4g26410) mitochondrion [GO:0005739]; cellular response to glucose stimulus [GO:0071333] locus:2131473; AT4G26410 NA Expressed protein (Os03g0324800 protein) (cDNA clone:006-207-E07, full insert sequence) (cDNA clone:J023091M20, full insert sequence) Q10M34 Q10M34_ORYSJ LOC_Os03g20860 Os03g0324800 OsJ_10675 OSNPB_030324800 ENOG411DU6I SARD1 Q9C9T2 SARD1_ARATH Protein SAR DEFICIENT 1 DISRUPTION PHENOTYPE: Compromised basal resistance and systemic acquired resistance (SAR) induced by Pseudomonas syringae p.v. maculicola ES4326 toward Hyaloperonospora arabidopsidis Noco2. Plants lacking both SARD1 and CBP60G fail to accumulate salicylic acid (SA) and to express PR1 and SID2 upon both biotic and abiotic stresses. {ECO:0000269|PubMed:20921422, ECO:0000269|PubMed:21615571}. FUNCTION: Transcription activator that binds DNA in a sequence-specific manner, 5'-GAAATTTTGG-3', to promote the expression of target genes (PubMed:20921422, PubMed:21615571, PubMed:23153277). Recruited to the promoter of ICS1 and other defense-related genes (e.g. PR1 and SID2) in response to both biotic (e.g. Pseudomonas syringae pv. maculicola ES4326) and abiotic stresses (e.g. UV-B), thus triggering slow defense responses by stimulating salicylic acid (SA) biosynthesis. Required for basal and systemic acquired resistance to P. syringae pv. maculicola and Hyaloperonospora arabidopsidis (PubMed:20921422, PubMed:21615571). {ECO:0000269|PubMed:20921422, ECO:0000269|PubMed:21615571, ECO:0000269|PubMed:23153277}. 50705 Protein SAR DEFICIENT 1 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to molecule of bacterial origin [GO:0071219]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; plant-type hypersensitive response [GO:0009626]; positive regulation of defense response to bacterium [GO:1900426]; regulation of salicylic acid biosynthetic process [GO:0080142]; regulation of systemic acquired resistance [GO:0010112]; regulation of transcription, DNA-templated [GO:0006355]; response to bacterium [GO:0009617]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351] locus:505006222; AT1G73805 calmodulin binding Calmodulin-binding protein-like (Os01g0134700 protein) (cDNA clone:002-183-A08, full insert sequence) Q943R3 Q943R3_ORYSJ Os01g0134700 OsJ_00269 OSJNBa0083M16.31 OSNPB_010134700 ENOG411DU6H EMB2799 Q8VZB1 Q8VZB1_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At2g39070:At2g39080; T7F6.24:T7F6.25) (Uncharacterized protein At2g39070At2g39080) Embryo defective; Cotyledon-D. Meinke-2008 38210 NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At2g39070:At2g39080; T7F6.24:T7F6.25) (Uncharacterized protein At2g39070At2g39080) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2065001; AT2G39080 NA Os01g0367100 protein (cDNA clone:002-173-F07, full insert sequence),Os01g0367400 protein,Os01g0367100 protein (Fragment) Q5JJM6,Q5JJM1,A0A0P0V2H1,A0A0P0V331 Q5JJM6_ORYSJ,Q5JJM1_ORYSJ,A0A0P0V2H1_ORYSJ,A0A0P0V331_ORYSJ B1642C07.56 P0784G04.3 Os01g0367100 B1329D01.2 OSNPB_010367100,B1329D01.9-1 P0784G04.10-1 Os01g0367400 OSNPB_010367400,Os01g0367400 OSNPB_010367400,Os01g0367100 OSNPB_010367100 ENOG411DU67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - F-box domain containing protein Os09g0342000 protein (cDNA clone:002-183-A06, full insert sequence),Os09g0324300 protein (cDNA clone:002-145-E06, full insert sequence),Os09g0324400 protein (cDNA clone:002-147-B05, full insert sequence),Os09g0324200 protein (cDNA clone:002-138-A06, full insert sequence),Os09g0337800 protein,Os09g0341500 protein (Fragment) Q6EQB0,Q6K3X8,Q6K3X6,Q6K3X9,Q6ERM0,A0A0P0XL33 Q6EQB0_ORYSJ,Q6K3X8_ORYSJ,Q6K3X6_ORYSJ,Q6K3X9_ORYSJ,Q6ERM0_ORYSJ,A0A0P0XL33_ORYSJ Os09g0342000 OJ1116_F08.15 OSNPB_090342000 P0448B03.26,Os09g0324300 Os09g0324300 OSNPB_090324300 P0692F07.5,Os09g0324400 Os09g0324400 OSNPB_090324400 P0692F07.7,Os09g0324200 Os09g0324200 OsJ_28869 OSNPB_090324200 P0692F07.4,Os09g0337800 OJ1118_A10.7 OsJ_28952 OSNPB_090337800,Os09g0341500 OSNPB_090341500 ENOG411DU66 ARID4 Q6NQ79 ARID4_ARATH AT-rich interactive domain-containing protein 4 (ARID domain-containing protein 4) 82567 AT-rich interactive domain-containing protein 4 (ARID domain-containing protein 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2084731; AT3G43240 ARID BRIGHT DNA-binding domain-containing protein Os08g0451700 protein (cDNA clone:J013099I15, full insert sequence) (cDNA clone:J033074B07, full insert sequence),Os08g0451400 protein,Os09g0434100 protein,Os08g0451400 protein (Fragment),Os08g0451500 protein (Fragment),Os09g0434000 protein (Fragment),Os08g0361000 protein Q6ZKR7,Q0J5A5,Q0J1K1,A0A0N7KPY4,A0A0P0XGB2,A0A0P0XGJ5,A0A0P0XN21,A0A0N7KPR0 Q6ZKR7_ORYSJ,Q0J5A5_ORYSJ,Q0J1K1_ORYSJ,A0A0N7KPY4_ORYSJ,A0A0P0XGB2_ORYSJ,A0A0P0XGJ5_ORYSJ,A0A0P0XN21_ORYSJ,A0A0N7KPR0_ORYSJ Os08g0451700 Os08g0451700 OJ1117_F10.6 OSNPB_080451700,Os08g0451400 Os08g0451400 OsJ_27533 OSNPB_080451400,Os09g0434100 OSNPB_090434100,Os08g0451400 OSNPB_080451400,Os08g0451500 OSNPB_080451500,Os09g0434000 OSNPB_090434000,Os08g0361000 OSNPB_080361000 ENOG411DU64 F4IM84,A0A1P8B2K8 DEXH5_ARATH,A0A1P8B2K8_ARATH DExH-box ATP-dependent RNA helicase DExH5, mitochondrial (EC 3.6.4.13),DEA(D/H)-box RNA helicase family protein R-ATH-3134963; 3.6.4.13 125749,118228 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial (EC 3.6.4.13),DEA(D/H)-box RNA helicase family protein cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA processing [GO:0006396],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2038796; AT2G01130 ATP-dependent RNA helicase NA NA NA NA NA NA NA ENOG411DU63 ZTP29,zinc transporter 29 Q940Q3,A0A1I9LQA6 ZTP29_ARATH,A0A1I9LQA6_ARATH Zinc transporter ZTP29 (Zinc transporter 29),ZIP metal ion transporter family DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but hypersensitivity to elevated levels of salt. {ECO:0000269|PubMed:20358261}. Germination and seedling growth sensitive to salt-M. Yuan-2010 FUNCTION: Zinc transporter involved response to salt stress. May act through the regulation of zinc levels required to induce the unfolded protein response (UPR) pathway. {ECO:0000269|PubMed:20358261}. 29515,24764 Zinc transporter ZTP29 (Zinc transporter 29),ZIP metal ion transporter family endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; zinc ion transmembrane transporter activity [GO:0005385]; zinc II ion transmembrane transport [GO:0071577],integral component of membrane [GO:0016021]; metal ion transmembrane transporter activity [GO:0046873] TISSUE SPECIFICITY: Expressed in hypocotyls, cotyledons, leaves and anthers. {ECO:0000269|PubMed:20358261}. locus:2091921; AT3G20870 transporter Os02g0196000 protein (Putative Zinc transporter zupT) Q6H7N1 Q6H7N1_ORYSJ Os02g0196000 OJ1225_F07.19 OJ1524_D08.4 OsJ_05749 OSNPB_020196000 ENOG411DU62 UBC15,UBC17,UBC16,UBC18,ATUBC2-1 P42743,O23239,Q9FWT2,Q9FMM0,A0A1P8AWD8 UBC15_ARATH,UBC17_ARATH,UBC16_ARATH,UBC18_ARATH,A0A1P8AWD8_ARATH Ubiquitin-conjugating enzyme 15 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 15) (PM42) (Ubiquitin carrier protein) (Ubiquitin-conjugating enzyme E2-18 kDa 15) (Ubiquitin-protein ligase),Probable ubiquitin-conjugating enzyme E2 17 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 17) (Ubiquitin carrier protein 17),Probable ubiquitin-conjugating enzyme E2 16 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 16) (Ubiquitin carrier protein 16),Probable ubiquitin-conjugating enzyme E2 18 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 18) (Ubiquitin carrier protein 18),Ubiquitin-conjugating enzyme family protein FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:8219072}.,FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 18262,18674,18485,18372,13025 Ubiquitin-conjugating enzyme 15 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 15) (PM42) (Ubiquitin carrier protein) (Ubiquitin-conjugating enzyme E2-18 kDa 15) (Ubiquitin-protein ligase),Probable ubiquitin-conjugating enzyme E2 17 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 17) (Ubiquitin carrier protein 17),Probable ubiquitin-conjugating enzyme E2 16 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 16) (Ubiquitin carrier protein 16),Probable ubiquitin-conjugating enzyme E2 18 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 18) (Ubiquitin carrier protein 18),Ubiquitin-conjugating enzyme family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; response to gibberellin [GO:0009739],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209],ATP binding [GO:0005524] locus:2028255;,locus:2115425;,locus:2018447;,locus:2159981; AT1G45050,AT4G36410,AT1G75440,AT5G42990 ubiquitin-conjugating enzyme Os12g0636800 protein (Ubiquitin-conjugating enzyme family protein, expressed),Os03g0681400 protein (Putative ubiquitin-conjugating enzyme E2) (Ubiquitin-conjugating enzyme family protein, expressed) (cDNA clone:J033147A12, full insert sequence) Q2QLM1,Q9AYE3 Q2QLM1_ORYSJ,Q9AYE3_ORYSJ Os12g0636800 LOC_Os12g44000 Os12g0636800 OsJ_36999 OSNPB_120636800,LOC_Os03g47770 Os03g0681400 Os03g47770 OsJ_12122 OSNPB_030681400 ENOG411DU61 NTRC O22229 TRXB3_ARATH NADPH-dependent thioredoxin reductase 3 (NTR3) (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase C) (ANTR-C) (AtNTRC) DISRUPTION PHENOTYPE: Dwarf plants with chlorotic leaves. Accumulation of Mg-protoporhyrin after feeding with 5-aminolevulinic acid. {ECO:0000269|PubMed:18625226, ECO:0000269|PubMed:19470473}. Small, pale green rosette; Dwarf; Sensitive to drought, oxidative stress, and salt stress-J. Cejudo-2004 FUNCTION: Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for plastidial 2-Cys peroxiredoxins and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. Required for chlorophyll biosynthesis and biogenesis of the photosynthetic apparatus. Activates aerobic cyclase which converts Mg-protoporhyrin monomethyl ester into protochlorophyllide. Involved in a light-dependent regulation of starch biosynthesis by redox activation of the ADP-glucose pyrophosphorylase (AGPase), a central enzyme of starch synthesis. {ECO:0000269|PubMed:16884685, ECO:0000269|PubMed:18625226, ECO:0000269|PubMed:19470473}. 1.8.1.9 57950 NADPH-dependent thioredoxin reductase 3 (NTR3) (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase C) (ANTR-C) (AtNTRC) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; enzyme activator activity [GO:0008047]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; hydrogen peroxide catabolic process [GO:0042744]; positive regulation of catalytic activity [GO:0043085]; regulation of chlorophyll biosynthetic process [GO:0010380]; regulation of starch biosynthetic process [GO:0010581]; removal of superoxide radicals [GO:0019430] locus:2062683; AT2G41680 thioredoxin reductase Thioredoxin reductase NTRC (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase C) (OsNTRC),Os07g0657900 protein (Fragment) Q70G58,A0A0P0X9V7 NTRC_ORYSJ,A0A0P0X9V7_ORYSJ Os07g0657900 LOC_Os07g46410 OsJ_25429,Os07g0657900 OSNPB_070657900 FUNCTION: Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for the plastidial 2-Cys peroxiredoxin BAS1 and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. {ECO:0000269|PubMed:15292215, ECO:0000269|PubMed:16891402, ECO:0000269|PubMed:19345687, ECO:0000269|PubMed:19825629}. ENOG411DU69 RID3 Q9M3B4 RID3_ARATH Protein ROOT INITIATION DEFECTIVE 3 (Root initiation defective 3 protein) (WD-40 repeat-containing protein RID3) Shoots fail to regenerate from callus at high temperature-M. Sugiyama-2009 FUNCTION: Involved in meristem development. Acts as negative regulator of the CUC-STM pathway in shoot apical meristem (SAM) neo-formation. {ECO:0000269|PubMed:19054368}. R-ATH-6791226; 48150 Protein ROOT INITIATION DEFECTIVE 3 (Root initiation defective 3 protein) (WD-40 repeat-containing protein RID3) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; negative regulation of shoot apical meristem development [GO:1902184] locus:2082891; AT3G49180 WD repeat-containing protein 18-like Os07g0408100 protein (Transducin / WD-40 repeat protein family-like protein),Os07g0408100 protein (cDNA clone:J023085F17, full insert sequence) Q7XAL8,Q0D724 Q7XAL8_ORYSJ,Q0D724_ORYSJ P0492E07.101 OJ1723_B06.131 Os07g0408100 OSNPB_070408100,Os07g0408100 Os07g0408100 OSNPB_070408100 ENOG411DU68 NPF5.3,NPF5.2,PTR3 Q9FNL8,Q9FNL7,A0A1P8BCP1 PTR4_ARATH,PTR3_ARATH,A0A1P8BCP1_ARATH Protein NRT1/ PTR FAMILY 5.3 (AtNPF5.3) (Peptide transporter PTR3-B),Protein NRT1/ PTR FAMILY 5.2 (AtNPF5.2) (Peptide transporter PTR3-A) (AtPTR3),Peptide transporter 3 The ptr3-1 mutant has reduced resistance to Erwinia carotovora subsp. carotovora a virulent necrotrophic pathogen and to Pseudomonas syringae pv. tomato a hemibiotrophic pathogen. But this mutant is not more susceptible to the virulent necrotrophic pathogen Xanthomonas campestris pv. campestris or to the avirulent necrotrophic pathogen Alternaria brassicicola. There is no significant difference in the glucosinolate or camalexin content of MeJA-treated ptr3-1 and wild type plants.,The ptr3-1 mutant has reduced germination on high concentrations of salt (140 160 and 200 mM NaCl) compared to wild type seeds.,The ptr3-2 mutant has reduced resistance to Erwinia carotovora subsp. carotovora a virulent necrotrophic pathogen and to Pseudomonas syringae pv. tomato a hemibiotrophic pathogen. But this mutant is not more susceptible to the virulent necrotrophic pathogen Xanthomonas campestris pv. campestris. In addition PR-1 is mildly less induced in response to Pseudomonas syringae pv. tomato DC3000 hrpA mutants in ptr3-2 plants than in wild-type control plants. FUNCTION: Peptide transporter. {ECO:0000250}.,FUNCTION: Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. {ECO:0000269|PubMed:15889294, ECO:0000269|PubMed:17143616}. R-ATH-427975;R-ATH-6798695; 66201,65271,52721 Protein NRT1/ PTR FAMILY 5.3 (AtNPF5.3) (Peptide transporter PTR3-B),Protein NRT1/ PTR FAMILY 5.2 (AtNPF5.2) (Peptide transporter PTR3-A) (AtPTR3),Peptide transporter 3 integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; dipeptide transporter activity [GO:0042936]; tripeptide transporter activity [GO:0042937]; defense response to bacterium [GO:0042742]; dipeptide transport [GO:0042938]; hyperosmotic salinity response [GO:0042538]; response to abscisic acid [GO:0009737]; response to histidine [GO:0080052]; response to jasmonic acid [GO:0009753]; response to leucine [GO:0043201]; response to phenylalanine [GO:0080053]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611]; tripeptide transport [GO:0042939],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in roots and siliques. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in roots. Detected in shoots, leaves and flowers. {ECO:0000269|PubMed:17481610}. locus:2161428;,locus:2161438; AT5G46040,AT5G46050 peptide transporter Os10g0470700 protein (POT family protein, expressed) (cDNA clone:J033020K03, full insert sequence) Q337L5 Q337L5_ORYSJ Os10g0470700 LOC_Os10g33210 Os10g0470700 OsJ_31853 OSNPB_100470700 ENOG411DT2W BLH9 Q9LZM8 BLH9_ARATH BEL1-like homeodomain protein 9 (BEL1-like protein 9) (Protein BELLRINGER) (Protein LARSON) (Protein PENNYWISE) (Protein REPLUMLESS) (Protein VAAMANA) Partial rescue of the rpl repla phenotype.,Shoot apex arrests prematurely in less than 50% of double mutants. This occurs around 2 weeks post germination or after 8 or so sets of leaves are made. The meristems are reduced in size. After growth resumption new abnormally shaped leaves are produced and the plants eventually flower.,In triple mutants the primary apical meristem terminates after germination-usually being consumed in the formation of a single terminal leaf. Growth can resume with the formation of new meristems however the phyllotaxy is abnormal.,Fruits of this double mutant exhibited a more severe replumless phenotype than rpl-2 similar to that shown by the strong rpl-3 mutant.,Additive with respect to both single mutants. short internodes down-ward orientation of siliques and organ clusters. Increased branching. Fruit defects.,pny phenotype,Similar to bp;pny double mutant.,Partially suppresses pny;bp phenotypes such as dwarfism loss of apical dominance and silique orientation.,Similar to knat6;bp;pny except htat shows greater suppression on bp pny silique orientation defects.,WT,Plants do not flower and continue to produce leaves even after 200 days in long-day inductive conditions. Shoot meristems initiated only leaves. SAMs respond to floral inductive signals but fail to induce floral meristem identity genes. Phyllotaxy in both reproductive and vegetative meristems is altered so that two organs are produced per node vs. the usual one.,Shoot apical meristem terminates prematurely.,phyllotaxy defects. Partial loss of apical dominance dwarfed. defects in replum differentiation and septum fusion.,Repla exhibit stripes of narrow cells very similar to those of the valve margin.,Inflorescence was shorter in stature than the wild-type inflorescence. In addition two to three more paraclades developed in this mutant than in wild-type plants.,The paraclades had a highly penetrant defect that affected the first one or two internodes. These internodes were dramatically reduced in length giving the appearance of leaves initiating in the axils of the cauline leaves. The internodes on the main stem between the paraclades also often were reduced in size.,The pedicels of flowers in pny were slightly shorter than those found in the wild type. Finally flowers occasionally were aberrant producing small curved club-shaped siliques at a low penetrance,Vegetative development appeared normal in pny plants.,Whereas the internode length was relatively constant in wild-type plants whereas close examination of the inflorescence in pny showed that internodes between the siliques often were absent or reduced severely. This internode defect appears to be random because normal-sized internodes were interspersed along the stem. Clusters of siliques often were visible on the inflorescences stems indicating that the internode defect could span a large region of the shoot. Dwarf; Increased branching; Short siliques; Complete loss of septum formation-M. Yanofsky-2003 FUNCTION: Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. 62007 BEL1-like homeodomain protein 9 (BEL1-like protein 9) (Protein BELLRINGER) (Protein LARSON) (Protein PENNYWISE) (Protein REPLUMLESS) (Protein VAAMANA) cytosol [GO:0005829]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; floral whorl morphogenesis [GO:0048457]; fruit development [GO:0010154]; internode patterning [GO:0080006]; maintenance of floral meristem identity [GO:0010076]; maintenance of inflorescence meristem identity [GO:0010077]; negative regulation of transcription, DNA-templated [GO:0045892]; pattern specification process [GO:0007389]; plant organ formation [GO:1905393]; secondary shoot formation [GO:0010223]; shoot system development [GO:0048367]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228]; xylem and phloem pattern formation [GO:0010051]; xylem development [GO:0010089] DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. locus:2185183; AT5G02030 homeodomain protein Os01g0848400 protein (Putative transcription factor qSH-1) (QSH-1),Os05g0455200 protein (Putative homeodomain protein) (cDNA clone:J023133E06, full insert sequence),Os05g0455200 protein (Fragment) Q941S9,Q60EM7,A0A0P0WNC3 Q941S9_ORYSJ,Q60EM7_ORYSJ,A0A0P0WNC3_ORYSJ qSH-1 qSH1 Os01g0848400 OsJ_04077 OSNPB_010848400 P0005H10.27,Os05g0455200 OJ1651_D06.6 OSNPB_050455200,Os05g0455200 OSNPB_050455200 ENOG411EDA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDA4 MHK7.2 Q9FKS7 Q9FKS7_ARATH Emb|CAB62340.1 34438 Emb|CAB62340.1 locus:2164451; AT5G40790 NA NA NA NA NA NA NA NA ENOG411EDAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EDAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myosin N-terminal SH3-like domain Os01g0713900 protein (Fragment) Q0JJV8 Q0JJV8_ORYSJ Os01g0713900 Os01g0713900 OSNPB_010713900 ENOG411EDAZ ATL45 Q9ZT49 ATL45_ARATH Probable E3 ubiquitin-protein ligase ATL45 (EC 2.3.2.27) (RING-H2 finger A3b) (RING-H2 finger protein ATL45) (RING-H2 zinc finger protein RHA3b) (RING-type E3 ubiquitin transferase ATL45) FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro (By similarity). May be involved in the early steps of the plant defense signaling pathway (Probable). {ECO:0000250|UniProtKB:Q9LY41, ECO:0000305|PubMed:17722694}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 2.3.2.27 21083 Probable E3 ubiquitin-protein ligase ATL45 (EC 2.3.2.27) (RING-H2 finger A3b) (RING-H2 finger protein ATL45) (RING-H2 zinc finger protein RHA3b) (RING-type E3 ubiquitin transferase ATL45) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to chitin [GO:0010200] locus:2117622; AT4G35480 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EDAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EDAM FBA8,FBA6,FBA4 Q9LF98,Q9SJQ9,F4KGQ0,A0A1P8BBB5,B3H6D7 ALFC8_ARATH,ALFC6_ARATH,ALFC4_ARATH,A0A1P8BBB5_ARATH,B3H6D7_ARATH Fructose-bisphosphate aldolase 8, cytosolic (AtFBA8) (EC 4.1.2.13) (Cytosolic aldolase 1) (cAld1),Fructose-bisphosphate aldolase 6, cytosolic (AtFBA6) (EC 4.1.2.13) (Cytosolic aldolase 2) (cAld2),Fructose-bisphosphate aldolase 4, cytosolic (AtFBA4) (EC 4.1.2.13) (Cytosolic aldolase 3) (cAld3),Fructose-bisphosphate aldolase (EC 4.1.2.13) DISRUPTION PHENOTYPE: Sterility. {ECO:0000269|PubMed:22561114}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seeds have increased germination rate in presence of high salt or high mannitol, and decreased germination rate in presence of abscisic acid (ABA), glucose, fructose and sucrose. {ECO:0000269|PubMed:22561114}. FUNCTION: Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}.,FUNCTION: Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis (PubMed:21782461). Associates with GAPC1 to the outer mitochondrial membrane, in a redox-dependent manner, leading to binding and bundling of actin. Actin binding and bundling occurs under oxidizing conditions and is reversible under reducing conditions. May be part of a redox-dependent retrograde signal transduction network for adaptation upon oxidative stress (PubMed:23316205). {ECO:0000269|PubMed:21782461, ECO:0000269|PubMed:23316205}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4. {ECO:0000305}.,PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4. {ECO:0000256|SAAS:SAAS00336717}. ARA:AT3G52930-MONOMER;,ARA:AT2G36460-MONOMER; R-ATH-114608;R-ATH-6798695;R-ATH-70171;R-ATH-70263;R-ATH-70350; 4.1.2.13 38540,38387,42906,28641,28720 Fructose-bisphosphate aldolase 8, cytosolic (AtFBA8) (EC 4.1.2.13) (Cytosolic aldolase 1) (cAld1),Fructose-bisphosphate aldolase 6, cytosolic (AtFBA6) (EC 4.1.2.13) (Cytosolic aldolase 2) (cAld2),Fructose-bisphosphate aldolase 4, cytosolic (AtFBA4) (EC 4.1.2.13) (Cytosolic aldolase 3) (cAld3),Fructose-bisphosphate aldolase (EC 4.1.2.13) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrial envelope [GO:0005740]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686]; response to karrikin [GO:0080167]; response to salt stress [GO:0009651],cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; mitochondria-nucleus signaling pathway [GO:0031930]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651],cytosol [GO:0005829]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096],fructose-bisphosphate aldolase activity [GO:0004332]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Highly expressed in flowers. {ECO:0000269|PubMed:22561114}.,TISSUE SPECIFICITY: Expressed in roots, rosettes leaves, cauline leaves, stems and flowers. {ECO:0000269|PubMed:22561114}. locus:2085141;,locus:2044856;,locus:2144563; AT3G52930,AT2G36460,AT5G03690 fructose-bisphosphate aldolase cytoplasmic NA NA NA NA NA NA NA ENOG411EDAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0476300 protein B9FJQ8 B9FJQ8_ORYSJ Os05g0476300 OsJ_18915 OSNPB_050476300 ENOG411EDAH Q8VZW0,A0A1P8APY9,A0A1P8APX6 Q8VZW0_ARATH,A0A1P8APY9_ARATH,A0A1P8APX6_ARATH At1g53180 (Uncharacterized protein At1g53180),Uncharacterized protein 40426,49172,47930 At1g53180 (Uncharacterized protein At1g53180),Uncharacterized protein locus:2009565; AT1G53180 NA NA NA NA NA NA NA NA ENOG411EDAI BGAL4 Q9SCV8 BGAL4_ARATH Beta-galactosidase 4 (Lactase 4) (EC 3.2.1.23) FUNCTION: Preferentially hydrolyzes para-nitrophenyl-beta-D-galactoside. Can hydrolyze para-nitrophenyl-beta-D-fucoside with 5 time less efficiency. {ECO:0000269|PubMed:17466346}. ARA:AT5G56870-MONOMER; 3.2.1.23 80591 Beta-galactosidase 4 (Lactase 4) (EC 3.2.1.23) apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Ubiquitous, with higher expression levels in roots and siliques. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:17234672, ECO:0000269|PubMed:17466346}. locus:2170282; AT5G56870 Beta-galactosidase NA NA NA NA NA NA NA ENOG411EDAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GMC oxidoreductase NA NA NA NA NA NA NA ENOG411EDAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411EDAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DR20 O22146,Q9SZA9,F4JPL6,F4JJY4 O22146_ARATH,Q9SZA9_ARATH,F4JPL6_ARATH,F4JJY4_ARATH Myosin-4 protein (DUF641) (Uncharacterized protein At2g45260),Myosin-4 protein (DUF641) (Uncharacterized protein AT4g33320) (Uncharacterized protein F17M5.80),Sec1/munc18-like (SM) proteins superfamily,Myosin-4 protein (DUF641) 48088,32977,26508,31783 Myosin-4 protein (DUF641) (Uncharacterized protein At2g45260),Myosin-4 protein (DUF641) (Uncharacterized protein AT4g33320) (Uncharacterized protein F17M5.80),Sec1/munc18-like (SM) proteins superfamily,Myosin-4 protein (DUF641) vacuolar membrane [GO:0005774],peroxisome [GO:0005777]; vesicle docking involved in exocytosis [GO:0006904] locus:2050891;,locus:2119226;,locus:2135134;,locus:2124326; AT2G45260,AT4G33320,AT4G36100,AT4G34080 Plant protein of unknown function (DUF641) Os10g0378400 protein Q0IY20 Q0IY20_ORYSJ Os10g0378400 OSNPB_100378400 ENOG411DR22 CFM2 Q8L7C2 CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic (Protein CRM FAMILY MEMBER 2) (AtCFM2) DISRUPTION PHENOTYPE: Albino seeds that germinate poorly and die soon after germination. {ECO:0000269|PubMed:18065687}. Null: Embryo defective; Knockdown: Pale green leaves-A. Barkan-2007 FUNCTION: Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup IIB also require the CRM domain proteins CAF1 or CAF2, with a simultaneous binding of CFM2 and CAF1 or CAF2. Can bind to and promote the splicing of the single group I intron in chloroplast tRNA transcript of trnL-UAA gene. {ECO:0000269|PubMed:18065687}. 113663 CRM-domain containing factor CFM2, chloroplastic (Protein CRM FAMILY MEMBER 2) (AtCFM2) chloroplast stroma [GO:0009570]; intracellular ribonucleoprotein complex [GO:0030529]; plastid stroma [GO:0009532]; RNA binding [GO:0003723]; Group I intron splicing [GO:0000372]; Group II intron splicing [GO:0000373]; mRNA processing [GO:0006397] locus:2096662; AT3G01370 Chloroplastic group IIA intron splicing facilitator CRS1 Os04g0464800 protein A0A0P0WB50 A0A0P0WB50_ORYSJ Os04g0464800 OSNPB_040464800 ENOG411DR23 CYP98A3 O22203 C98A3_ARATH Cytochrome P450 98A3 (EC 1.14.-.-) (Protein REDUCED EPIDERMAL FLUORESCENCE 8) (p-coumaroylshikimate/quinate 3'-hydrolxylase) (C3'H) DISRUPTION PHENOTYPE: Dwarf. 91% and 97% reduction of the levels of scopoletin and scopolin respectively, but increased levels of skimmin, the beta-glucoside of umbelliferone. Altered lignin composition and increased susceptiblity to fungal colonization. {ECO:0000269|PubMed:11967092, ECO:0000269|PubMed:16377748, ECO:0000269|PubMed:16405932}. background Wassilewskija hypocotyls with shortened length and increased diameter roots had a swollen aspect with increased initiation from the crown and showed reduced growth and gravitropism in soil plant maintained the dwarfed phenotype with a rosette never exceeding 1 to 1.5 cm in diameter developed a bushy miniature rosette of round leaves growth of cyp98A3 plants was arrested latest at the onset of primary stem development (2 weeks later than wild-type) showed darker leaf coloration severe alteration of lignin content and composition - mainly H units (95% to 3.5% in wild-type) ectopic lignification in roots,Reduced fluorescent phenylpropanoid secondary metabolites reduced lignin collapsed vessel elements dwarf Dwarf; Collapsed vessel elements; Reduced lignin-C. Chapple-2002 FUNCTION: Cytochrome P450 which catalyzes 3'-hydroxylation of p-coumaric esters of shikimic/quinic acids to form lignin monomers. Can use p-coumarate, p-coumaraldehyde, p-coumaroyl methyl ester, 5-O-(4-coumaroyl) D-quinate and 5-O-(4-coumaroyl) shikimate as substrates, but not p-coumaryl alcohol, p-coumaroyl CoA, 1-O-p-coumaroyl-beta-D-glucose, p-hydroxy-cinnamyl alcohol, cinnamate, caffeate or ferulate. Has a weak activity on tri(p-coumaroyl)spermidine, but none on triferuloylspermidine. Hydroxylates preferentially the 5-O-isomer, but can also convert the 4-O- and 3-O-isomers with a lower efficiency. Involved in the biosynthesis of the coumarins scopoletin and scopolin. Essential for the biosynthesis of lignin. {ECO:0000269|PubMed:11429408, ECO:0000269|PubMed:11967091, ECO:0000269|PubMed:11967092, ECO:0000269|PubMed:16377748, ECO:0000269|PubMed:16405932}. MetaCyc:AT2G40890-MONOMER; 1.14.-.- 57927 Cytochrome P450 98A3 (EC 1.14.-.-) (Protein REDUCED EPIDERMAL FLUORESCENCE 8) (p-coumaroylshikimate/quinate 3'-hydrolxylase) (C3'H) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; identical protein binding [GO:0042802]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; p-coumarate 3-hydroxylase activity [GO:0046409]; coumarin biosynthetic process [GO:0009805]; flavonoid biosynthetic process [GO:0009813]; lignin biosynthetic process [GO:0009809]; phenylpropanoid biosynthetic process [GO:0009699] TISSUE SPECIFICITY: Highly expressed in stems, roots and siliques. Detected in leaves flowers and seedlings. Highest expression detected in differentiating xylem. {ECO:0000269|PubMed:11429408, ECO:0000269|PubMed:11967091, ECO:0000269|PubMed:19779199}. locus:2058440; AT2G40890 cytochrome P450 Os05g0494000 protein,Cytochrome P450 98A1, putative (Os10g0196100 protein),Os10g0196000 protein Q0DH37,Q7G4F7,A0A0P0XT35 Q0DH37_ORYSJ,Q7G4F7_ORYSJ,A0A0P0XT35_ORYSJ Os05g0494000 Os05g0494000 OSNPB_050494000,Os10g0196100 LOC_Os10g12080 OsJ_30971 OSNPB_100196100,Os10g0196000 OSNPB_100196000 ENOG411DR24 Q6NM84,B3H686,A0A1I9LP78,A0A1I9LP77 Q6NM84_ARATH,B3H686_ARATH,A0A1I9LP78_ARATH,A0A1I9LP77_ARATH At3g59490,Uncharacterized protein 27537,33573,24564,31280 At3g59490,Uncharacterized protein locus:2097568; AT3G59490 NA Os09g0515300 protein (cDNA clone:J033086F18, full insert sequence) Q0J0D5 Q0J0D5_ORYSJ Os09g0515300 Os09g0515300 OSNPB_090515300 ENOG411DR25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Probable serine/threonine-protein kinase WNK9 (OsWNK9) (EC 2.7.11.1) (Protein kinase with no lysine 9),Os12g0162100 protein (Fragment) Q2QXC6,A0A0P0Y784 WNK9_ORYSJ,A0A0P0Y784_ORYSJ WNK9 Os12g0162100 LOC_Os12g06490,Os12g0162100 OSNPB_120162100 ENOG411DR26 Q9FRL3,Q93YP9 ERDL6_ARATH,ERDL4_ARATH Sugar transporter ERD6-like 6,Sugar transporter ERD6-like 4 FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 52901,52787 Sugar transporter ERD6-like 6,Sugar transporter ERD6-like 4 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose homeostasis [GO:0042593]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; positive regulation of seed germination [GO:0010030],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] locus:2025132;,locus:2016407; AT1G75220,AT1G19450 sugar transporter ERD6-like Os05g0567700 protein,Os05g0579000 protein (Putative sugar transporter),Os05g0567800 protein (Putative integral membrane protein) (cDNA clone:J023121D20, full insert sequence),Os05g0567800 protein Q688W1,Q688U6,Q688W0,A0A0P0WQY1 Q688W1_ORYSJ,Q688U6_ORYSJ,Q688W0_ORYSJ,A0A0P0WQY1_ORYSJ Os05g0567700 Os05g0567700 OJ1781_H11.16 OSNPB_050567700,Os05g0579000 OSJNBa0017N18.5 OSNPB_050579000,Os05g0567800 OJ1781_H11.17 OsJ_19582 OSNPB_050567800,Os05g0567800 OSNPB_050567800 ENOG411DR27 SDE3 Q8GYD9,A0A1P8AMM9 SDE3_ARATH,A0A1P8AMM9_ARATH Probable RNA helicase SDE3 (EC 3.6.4.13) (Silencing defective protein 3),p-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: Delayed loss of transgene silencing (post-transcriptional gene silencing (PTGS)), with full silencing in the cotyledons and in the hypocotyl, contrasting with a loss of silencing in true leaves. Impaired maintenance of tobacco rattle virus (TRV)-mediated silencing. Reduced methylation of cytosine residues in targets loci but enrichment of histone-H3 'Lys-4' methylation (H3K4me3) at the same sites. {ECO:0000269|PubMed:11495769, ECO:0000269|PubMed:22940249}. FUNCTION: Probable RNA helicase required for post-transcriptional gene silencing (PTGS), a process that provides protection in plants against virus infection and can suppress expression of transgenes. Plays a central role in RNA interference (RNAi) process, a process that mediates mRNA destruction of translational repression. Required for the assembly of the RISC complex, a complex required for target RNA destruction or repression. May be required in the RISC assembly to unwind miRNAs, in the production of single-stranded miRNA from the double-stranded miRNA, a key step in RISC formation. Involved in the amplification of sense-PTGS (S-PTGS), leading to siRNA production. Required for the maintenance but not the initiation of tobacco rattle virus (TRV)-mediated silencing, probably by mediating/maintaining DNA methylation and chromatin-based transcriptional gene silencing at some genomic locations. {ECO:0000269|PubMed:11296239, ECO:0000269|PubMed:11495769, ECO:0000269|PubMed:12941703, ECO:0000269|PubMed:22940249}. 3.6.4.13 113363,104725 Probable RNA helicase SDE3 (EC 3.6.4.13) (Silencing defective protein 3),p-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; RNA helicase activity [GO:0003724]; posttranscriptional gene silencing by RNA [GO:0035194]; virus induced gene silencing [GO:0009616],hydrolase activity [GO:0016787] locus:2200996; AT1G05460 RNA helicase Os03g0160400 protein (RNA helicase SDE3, putative, expressed) Q10RG1 Q10RG1_ORYSJ Os03g0160400 LOC_Os03g06440 Os03g0160400 OsJ_09495 OSNPB_030160400 ENOG411DR28 CDKB1-1,CDKB1-2,CDKB1:2 P25859,Q2V419,A0A1P8B0A0 CKB11_ARATH,CKB12_ARATH,A0A1P8B0A0_ARATH Cyclin-dependent kinase B1-1 (CDKB1;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cell division control protein 2 homolog B),Cyclin-dependent kinase B1-2 (CDKB1;2) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin-dependent kinase B12 DISRUPTION PHENOTYPE: No apparent stomatal abnormalities. The double mutant cdkb1;1 cdkb1;2 has a reduced number of abnormal stomata consisting in single guard cells (GC) (PubMed:20675570, PubMed:24123248, PubMed:24687979). CDKA-1 partially rescue abnormal stomata phenotype of cdkb1;1 cdkb1;2 (PubMed:24687979). The quadruple mutant flp-1 myb88 cdkb1;1 cdkb1;2 has a reduced number of large single guard cells blocked at mitosis, with strongly altered shape and size and characterized by enlarged nucleus due to endomitosis and endocycling, as well as extensive chloroplast replication (PubMed:24123248). {ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24687979}.,DISRUPTION PHENOTYPE: No apparent stomatal abnormalities. The double mutant cdkb1;1 cdkb1;2 has a reduced number of abnormal stomata consisting in single guard cells (GC) (PubMed:20675570). The quadruple mutant flp-1 myb88 cdkb1;1 cdkb1;2 has a reduced number of large single guard cells blocked at mitosis, with strongly altered shape and size and characterized by enlarged nucleus due to endomitosis and endocycling, as well as extensive chloroplast replication (PubMed:24123248). {ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:24123248}. FUNCTION: May control G2/M (mitosis) phase progression. Plays a role in regulating seedling growth in darkness via regulation of hypocotyl cell elongation and cotyledon cell development. Plays a role in stomatal development. Required to suppress endoreduplication. Together with CDKB1-2, promotes both the last division in the stomatal cell lineage as well as the number of stomata (PubMed:20675570). In collaboration with MYB124 and MYB88, restrict the G1/S transition and chloroplast and nuclear number during stomatal formation, and normally maintain fate and developmental progression throughout the stomatal cell lineage (PubMed:24123248, PubMed:24687979). {ECO:0000269|PubMed:10521519, ECO:0000269|PubMed:11442060, ECO:0000269|PubMed:11477067, ECO:0000269|PubMed:15031414, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24687979}.,FUNCTION: Together with CDKB1-1, promotes both the last division in the stomatal cell lineage as well as the number of stomata (PubMed:20675570). In collaboration with MYB124 and MYB88, restrict the G1/S transition and chloroplast and nuclear number during stomatal formation, and normally maintain fate and developmental progression throughout the stomatal cell lineage (PubMed:24123248). {ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:24123248}. 2.7.11.22; 2.7.11.22; 2.7.11.23 35318,35582,28508 Cyclin-dependent kinase B1-1 (CDKB1;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cell division control protein 2 homolog B),Cyclin-dependent kinase B1-2 (CDKB1;2) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin-dependent kinase B12 cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin binding [GO:0030332]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; cell division [GO:0051301]; cotyledon development [GO:0048825]; DNA endoreduplication [GO:0042023]; G1/S transition of mitotic cell cycle [GO:0000082]; guard mother cell differentiation [GO:0010444]; positive regulation of cell proliferation [GO:0008284]; protein phosphorylation [GO:0006468]; regulation of cell cycle G1/S phase transition [GO:1902806]; regulation of DNA endoreduplication [GO:0032875]; regulation of G2/M transition of mitotic cell cycle [GO:0010389]; regulation of gene expression [GO:0010468]; regulation of stomatal complex patterning [GO:2000037]; response to organic substance [GO:0010033]; signal transduction [GO:0007165]; stomatal complex formation [GO:0010376]; unidimensional cell growth [GO:0009826],cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein serine/threonine kinase activity [GO:0004674]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; G1/S transition of mitotic cell cycle [GO:0000082]; guard mother cell differentiation [GO:0010444]; positive regulation of cell proliferation [GO:0008284]; protein phosphorylation [GO:0006468]; regulation of cell cycle [GO:0051726]; regulation of cell cycle G1/S phase transition [GO:1902806]; regulation of DNA endoreduplication [GO:0032875]; regulation of G2/M transition of mitotic cell cycle [GO:0010389]; regulation of gene expression [GO:0010468]; regulation of stomatal complex patterning [GO:2000037]; response to organic substance [GO:0010033]; signal transduction [GO:0007165],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] DEVELOPMENTAL STAGE: Preferentially expressed in the S and G2 phases. Expressed in actively dividing cells: root and shoot apical meristems, leaf primordia and emerging lateral root meristem. Expressed in light-grown seedlings from 1 up to 7 days after germination with a peak at 2 and 3 days. Observed in late guard mother cells (GMC), newly formed guard cells, and immature stomata, thus being expressed just before and after the symmetric division of stomatal differentiation (PubMed:20675570). {ECO:0000269|PubMed:10521519, ECO:0000269|PubMed:11477067, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:8893539}. TISSUE SPECIFICITY: Highly expressed in guard cells and stomatal precursor cells of cotyledons. Expressed in roots, stems, flowers and siliques. {ECO:0000269|PubMed:15031414, ECO:0000269|PubMed:8893539}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:11432958}. locus:2080290;,locus:2064087; AT3G54180,AT2G38620 Cyclin-dependent kinase Cyclin-dependent kinase B1-1 (CDKB1;1) (CDKB;1) (EC 2.7.11.22) (EC 2.7.11.23) Q8L4P8 CKB11_ORYSJ CDKB1-1 Os01g0897000 LOC_Os01g67160 OsJ_04403 P0674H09.14 P0696G06.32 ENOG411DR29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Glycosyltransferase family 14 protein-like (Os01g0772500 protein) Q8S1J1 Q8S1J1_ORYSJ Os01g0772500 OsJ_03623 OSNPB_010772500 P0695H10.18 ENOG411DR2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb related transcription factor (Os06g0258000 protein) (Putative myb factor) Q652E6 Q652E6_ORYSJ Os06g0258000 OsJ_20870 OSNPB_060258000 P0603C10.20 P0624H09.43 ENOG411DR2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Transcription factor TGAL3 (bZIP transcription factor 47) (OsbZIP47),Os01g0882200 protein (Fragment),Os10g0566200 protein Q5Z6N9,A0A0P0VBB7,A0A0P0XXC4 TGAL3_ORYSJ,A0A0P0VBB7_ORYSJ,A0A0P0XXC4_ORYSJ TGAL3 Os06g0265400 LOC_Os06g15480 OJ1001_B06.18,Os01g0882200 OSNPB_010882200,Os10g0566200 OSNPB_100566200 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411DR2D LARP6A Q94A38 LRP6A_ARATH La-related protein 6A (AtLARP6a) FUNCTION: Transcriptional regulator. {ECO:0000250}. 46842 La-related protein 6A (AtLARP6a) intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; RNA processing [GO:0006396]; transcription, DNA-templated [GO:0006351] locus:2170478; AT5G46250 La domain Os01g0756400 protein (Fragment) Q0JJ76 Q0JJ76_ORYSJ Os01g0756400 Os01g0756400 OSNPB_010756400 ENOG411DR2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q5U1P8 Q5U1P8_ORYSJ prx45 LOC_Os03g25330 Os03g0368900 OSJNBa0013M12.9 OSNPB_030368900 ENOG411DR2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0577600 protein A0A0P0V4D1 A0A0P0V4D1_ORYSJ Os01g0577600 OSNPB_010577600 ENOG411DR2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os04g0638100 protein (cDNA clone:J033133D10, full insert sequence),Os04g0638000 protein,Os04g0638401 protein Q0J9P7,A0A0P0WFM9,A0A0P0WFA1 Q0J9P7_ORYSJ,A0A0P0WFM9_ORYSJ,A0A0P0WFA1_ORYSJ Os04g0638100 Os04g0638100 OsJ_16335 OSNPB_040638100,Os04g0638000 OSNPB_040638000,Os04g0638401 OSNPB_040638401 ENOG411DR2I Q9ASR4,Q8W0Z7,A0A1P8BAA6,A0A1P8BAB8,F4K4A7 BCAL2_ARATH,BCAL1_ARATH,A0A1P8BAA6_ARATH,A0A1P8BAB8_ARATH,F4K4A7_ARATH Branched-chain-amino-acid aminotransferase-like protein 2,Branched-chain-amino-acid aminotransferase-like protein 1 (Atbcat-like),D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein ARA:GQT-279-MONOMER;,ARA:GQT-502-MONOMER; 62896,62212,56935,52711,104807 Branched-chain-amino-acid aminotransferase-like protein 2,Branched-chain-amino-acid aminotransferase-like protein 1 (Atbcat-like),D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein catalytic activity [GO:0003824]; metabolic process [GO:0008152],transaminase activity [GO:0008483]; metabolic process [GO:0008152] locus:2146445;,locus:2096289; AT5G27410,AT3G05190 branched-chain-amino-acid aminotransferase-like protein Os03g0359100 protein,Os03g0359100 protein (Fragment) C7IZX5,A0A0P0VYG4 C7IZX5_ORYSJ,A0A0P0VYG4_ORYSJ Os03g0359100 OSNPB_030359100 ENOG411DR2K PAP4,PAP3,PAP8,PAP17 Q8VYU7,Q8H129,Q8VYZ2,Q9SCX8,C0Z3F1,A0A1P8ANM0,A0A1P8ANL8,A0A1P8AQV6,A0A1P8B2S6 PPA4_ARATH,PPA3_ARATH,PPA8_ARATH,PPA17_ARATH,C0Z3F1_ARATH,A0A1P8ANM0_ARATH,A0A1P8ANL8_ARATH,A0A1P8AQV6_ARATH,A0A1P8B2S6_ARATH Purple acid phosphatase 4 (EC 3.1.3.2),Purple acid phosphatase 3 (EC 3.1.3.2),Purple acid phosphatase 8 (EC 3.1.3.2),Purple acid phosphatase 17 (EC 3.1.3.2) (Acid phosphatase type 5) (Peroxidase) (EC 1.11.1.7),AT1G25230 protein (Calcineurin-like metallo-phosphoesterase superfamily protein),Purple acid phosphatase 3,Purple acid phosphatase (EC 3.1.3.2),Purple acid phosphatase 8 FUNCTION: Metallo-phosphoesterase involved in phosphate metabolism. Has a peroxidase activity. {ECO:0000269|PubMed:10504579}. ARA:AT1G25230-MONOMER;,ARA:AT1G14700-MONOMER;,ARA:AT2G01890-MONOMER; R-ATH-196843; 3.1.3.2,3.1.3.2; 1.11.1.7 38241,42052,38173,38297,30903,31022,33665,41090,30766 Purple acid phosphatase 4 (EC 3.1.3.2),Purple acid phosphatase 3 (EC 3.1.3.2),Purple acid phosphatase 8 (EC 3.1.3.2),Purple acid phosphatase 17 (EC 3.1.3.2) (Acid phosphatase type 5) (Peroxidase) (EC 1.11.1.7),AT1G25230 protein (Calcineurin-like metallo-phosphoesterase superfamily protein),Purple acid phosphatase 3,Purple acid phosphatase (EC 3.1.3.2),Purple acid phosphatase 8 extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872],extracellular region [GO:0005576]; vacuole [GO:0005773]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872],extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; dephosphorylation [GO:0016311],cell surface [GO:0009986]; extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; phosphatase activity [GO:0016791]; cellular phosphate ion homeostasis [GO:0030643]; response to hydrogen peroxide [GO:0042542],acid phosphatase activity [GO:0003993],integral component of membrane [GO:0016021]; acid phosphatase activity [GO:0003993] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}.,TISSUE SPECIFICITY: Expressed in stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2033010;,locus:2006742;,locus:2059748;,locus:2088590; AT1G25230,AT1G14700,AT2G01890,AT3G17790 Purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2) Q2R2T6 Q2R2T6_ORYSJ Os11g0549615 LOC_Os11g34710 Os11g0549615 OSNPB_110549615 ENOG411DR2M CBSDUF3,CBSDUF7,CBSDUF6,CBSDUF5 Q9ZQR4,Q8RY60,Q8VZI2,Q9LTD8,A0A1P8BGS5,A0A1P8AZE8,A0A1P8AZH6,A0A1P8AQD0,A0A1P8B3L6,A0A1P8B3M0,A0A1P8BGT2,A0A1P8BGT4 Y2452_ARATH,Y1733_ARATH,Y4370_ARATH,Y5279_ARATH,A0A1P8BGS5_ARATH,A0A1P8AZE8_ARATH,A0A1P8AZH6_ARATH,A0A1P8AQD0_ARATH,A0A1P8B3L6_ARATH,A0A1P8B3M0_ARATH,A0A1P8BGT2_ARATH,A0A1P8BGT4_ARATH DUF21 domain-containing protein At2g14520 (CBS domain-containing protein CBSDUF3),DUF21 domain-containing protein At1g47330 (CBS domain-containing protein CBSDUF7),DUF21 domain-containing protein At4g33700 (CBS domain-containing protein CBSDUF6),DUF21 domain-containing protein At5g52790 (CBS domain-containing protein CBSDUF5),CBS domain protein with a domain protein (DUF21),CBS domain protein (DUF21),Methyltransferase, putative (DUF21) 47314,57930,47110,55127,43124,46741,38432,49389,31914,38173,45436,49663 DUF21 domain-containing protein At2g14520 (CBS domain-containing protein CBSDUF3),DUF21 domain-containing protein At1g47330 (CBS domain-containing protein CBSDUF7),DUF21 domain-containing protein At4g33700 (CBS domain-containing protein CBSDUF6),DUF21 domain-containing protein At5g52790 (CBS domain-containing protein CBSDUF5),CBS domain protein with a domain protein (DUF21),CBS domain protein (DUF21),Methyltransferase, putative (DUF21) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2055155;,locus:2203746;,locus:2134273;,locus:2149659; AT2G14520,AT1G47330,AT4G33700,AT5G52790 domain-containing protein CBS domain-containing protein, putative, expressed (Os03g0125800 protein) (cDNA clone:J023021E03, full insert sequence),Os03g0674300 protein (Fragment) Q10SE0,A0A0P0W210 Q10SE0_ORYSJ,A0A0P0W210_ORYSJ Os03g0125800 LOC_Os03g03430 Os03g0125800 OsJ_09244 OSNPB_030125800,Os03g0674300 OSNPB_030674300 ENOG411DR2N CYP51G2,CYP51G1 Q5Y750,Q9SAA9 CP512_ARATH,CP511_ARATH Putative sterol 14-demethylase-like protein (Cytochrome P450 51A1) (Cytochrome P450 51G2),Sterol 14-demethylase (EC 1.14.13.70) (Cytochrome P450 51A2) (Cytochrome P450 51G1) (AtCYP51) (Obtusifoliol 14-demethylase) (Protein EMBRYO DEFECTIVE 1738) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16040657, ECO:0000269|PubMed:16169959}.,DISRUPTION PHENOTYPE: Lack of membrane integrity. Seedling lethality. {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:16040657, ECO:0000269|PubMed:16169959}. Plieotrophic effects on plant development. Slow growth defective hypocotyl elongation abnormal flowers reduced levels of sterolsmembranes leaky.,Seedling lethal pale yellow plants die at a variety of seedling stages.,embryo lethal. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Involved in sterol biosynthesis. Catalyzes the 14-alpha demethylation of obtusifoliol to 4 alpha-methyl-5 alpha-ergosta-8,14,24(28)-trien-3 beta-ol. {ECO:0000269|PubMed:11437378, ECO:0000269|PubMed:16040657, ECO:0000269|PubMed:16169959}. MISCELLANEOUS: Decreased expression of CYP51G1 by antisense leads to a semidwarf phenotype in the early growth stage and a longer life span. Disruption mutants accumulate obtusifoliol and 14-alpha-methyl-sterols and cannot be rescued by exogenous application of brassinosteroids. ARA:AT1G11680-MONOMER;MetaCyc:AT1G11680-MONOMER; R-ATH-191273;R-ATH-211976; 1.14.13.70 16568,55495 Putative sterol 14-demethylase-like protein (Cytochrome P450 51A1) (Cytochrome P450 51G2),Sterol 14-demethylase (EC 1.14.13.70) (Cytochrome P450 51A2) (Cytochrome P450 51G1) (AtCYP51) (Obtusifoliol 14-demethylase) (Protein EMBRYO DEFECTIVE 1738) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; methyltransferase activity [GO:0008168]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; methyltransferase activity [GO:0008168]; sterol 14-demethylase activity [GO:0008398]; sterol biosynthetic process [GO:0016126] TISSUE SPECIFICITY: Expressed specifically in roots. {ECO:0000269|PubMed:16040657}.,TISSUE SPECIFICITY: Expressed in leaves, roots, stems, siliques, flowers, flower buds and seedlings. {ECO:0000269|PubMed:16040657}. locus:2027312; AT2G17330,AT1G11680 cytochrome P450 Cytochrome P450 51, putative, expressed (Os11g0525200 protein) (cDNA clone:001-014-C05, full insert sequence) Q2R3E2 Q2R3E2_ORYSJ LOC_Os11g32240 Os11g0525200 OSNPB_110525200 ENOG411DR2P SPS1,SPS2 Q94BT0,Q9FY54 SPSA1_ARATH,SPSA2_ARATH Sucrose-phosphate synthase 1 (EC 2.4.1.14) (Sucrose-phosphate synthase 1F) (AtSPS1F) (Sucrose-phosphate synthase 5.1) (AtSPS5.1) (UDP-glucose-fructose-phosphate glucosyltransferase),Probable sucrose-phosphate synthase 2 (EC 2.4.1.14) (Protein KAONASHI 2) (Sucrose-phosphate synthase 2F) (AtSPS2F) (Sucrose-phosphate synthase 5.2) (AtSPS5.2) (UDP-glucose-fructose-phosphate glucosyltransferase) DISRUPTION PHENOTYPE: Loss of nectar secretion accompanied by starch accumulation in nectaries. {ECO:0000269|PubMed:24670640}. Defects are specific to pollen exine structure. Smaller mesh size in the exine structure. Increased number of baculae. Fully fertile. Abnormal pollen exine layer-S. Ishiguro-2008 FUNCTION: Plays a major role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation. Required for nectar secretion. {ECO:0000269|PubMed:10998187, ECO:0000269|PubMed:17415671, ECO:0000269|PubMed:21309792, ECO:0000269|PubMed:24670640}.,FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation. Required for nectar secretion. {ECO:0000269|PubMed:18779216, ECO:0000269|PubMed:24670640}. MISCELLANEOUS: Plants silencing SPS1 show reduced shoot growth, leaf fresh weight and dry weight, and decreased leaf starch, leaf sugar levels and sucrose export rates (PubMed:10998187 and PubMed:21309792). Tobacco plants overexpressing Arabidopsis SPS1 show increased stem height and diameter, increased total dry weight and elevated concentrations of sink sucrose pools (PubMed:17415671). {ECO:0000305|PubMed:17415671}. PATHWAY: Glycan biosynthesis; sucrose biosynthesis; sucrose from D-fructose 6-phosphate and UDP-alpha-D-glucose: step 1/2. 2.4.1.14 117321,116966 Sucrose-phosphate synthase 1 (EC 2.4.1.14) (Sucrose-phosphate synthase 1F) (AtSPS1F) (Sucrose-phosphate synthase 5.1) (AtSPS5.1) (UDP-glucose-fructose-phosphate glucosyltransferase),Probable sucrose-phosphate synthase 2 (EC 2.4.1.14) (Protein KAONASHI 2) (Sucrose-phosphate synthase 2F) (AtSPS2F) (Sucrose-phosphate synthase 5.2) (AtSPS5.2) (UDP-glucose-fructose-phosphate glucosyltransferase) cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; sucrose synthase activity [GO:0016157]; sucrose-phosphate synthase activity [GO:0046524]; nectar secretion [GO:0071836]; sucrose biosynthetic process [GO:0005986],plasma membrane [GO:0005886]; sucrose synthase activity [GO:0016157]; sucrose-phosphate synthase activity [GO:0046524]; nectar secretion [GO:0071836]; pollen wall assembly [GO:0010208]; sucrose biosynthetic process [GO:0005986] TISSUE SPECIFICITY: Expressed in seeds, stems, rosette leaves, flowers and siliques. Highly expressed in maturing nectaries. {ECO:0000269|PubMed:21309792, ECO:0000269|PubMed:24670640}.,TISSUE SPECIFICITY: Expressed in roots, cauline leaves, flower buds, flowers and anthers. Highly expressed in maturing nectaries. {ECO:0000269|PubMed:18779216, ECO:0000269|PubMed:24670640}. locus:2149179;,locus:2184891; AT5G20280,AT5G11110 role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation Probable sucrose-phosphate synthase 4 (EC 2.4.1.14) (Sucrose phosphate synthase 4F) (OsSPS4F) (UDP-glucose-fructose-phosphate glucosyltransferase) Q6ZHZ1 SPSA4_ORYSJ SPS4 SPS8 Os08g0301500 LOC_Os08g20660 OJ1115_A07.105 FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation (By similarity). {ECO:0000250}. ENOG411DR2Q PAI2,PAI1,PAI3 Q42527,Q42440,Q8LPI9,A0A1P8ATU6,A0A1P8ATF0,B3H4J9,A0A1P8ATT5,A0A1P8ATF1,A0A1P8B9P1,A0A1P8B9M1 PAI2_ARATH,PAI1_ARATH,PAI3_ARATH,A0A1P8ATU6_ARATH,A0A1P8ATF0_ARATH,B3H4J9_ARATH,A0A1P8ATT5_ARATH,A0A1P8ATF1_ARATH,A0A1P8B9P1_ARATH,A0A1P8B9M1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 2, chloroplastic (EC 5.3.1.24),N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic (EC 5.3.1.24),N-(5'-phosphoribosyl)anthranilate isomerase 3, chloroplastic (EC 5.3.1.24),Phosphoribosylanthranilate isomerase 1,Phosphoribosylanthranilate isomerase 3,Phosphoribosylanthranilate isomerase 2 DISRUPTION PHENOTYPE: Bushy morphology, reduced fertility, blue fluorescence under UV light and resistance to the anthranilate analog 6-methylanthranilate. {ECO:0000269|PubMed:11346937}. PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 3/5. ARA:AT5G05590-MONOMER;,ARA:AT1G07780-MONOMER;ARA:GQT-135-MONOMER;,ARA:AT1G29410-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 5.3.1.24 29619,29633,26525,24890,24247,23357,22047,20944,24876,23343 N-(5'-phosphoribosyl)anthranilate isomerase 2, chloroplastic (EC 5.3.1.24),N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic (EC 5.3.1.24),N-(5'-phosphoribosyl)anthranilate isomerase 3, chloroplastic (EC 5.3.1.24),Phosphoribosylanthranilate isomerase 1,Phosphoribosylanthranilate isomerase 3,Phosphoribosylanthranilate isomerase 2 chloroplast [GO:0009507]; phosphoribosylanthranilate isomerase activity [GO:0004640]; tryptophan biosynthetic process [GO:0000162],chloroplast [GO:0009507]; phosphoribosylanthranilate isomerase activity [GO:0004640]; growth [GO:0040007]; multicellular organism development [GO:0007275]; response to UV [GO:0009411]; tryptophan biosynthetic process [GO:0000162],phosphoribosylanthranilate isomerase activity [GO:0004640]; tryptophan metabolic process [GO:0006568] TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:11346937}. locus:2169687;,locus:2026509;,locus:2013588; AT5G05590,AT1G07780,AT1G29410 n-(5'-phosphoribosyl)anthranilate isomerase Os02g0266000 protein (Putative phosphoribosylanthranilate isomerase 1 (PAI1)) (cDNA, clone: J075180O15, full insert sequence) Q6ETX4 Q6ETX4_ORYSJ Os02g0266000 OsJ_06174 OSNPB_020266000 P0006C08.30 ENOG411DR2R UGT74F1,UGT74F2,UGT74E2,UGT74E1 O22820,O22822,Q9SYK9,P0C7P7,F4IS54 U74F1_ARATH,U74F2_ARATH,U74E2_ARATH,U74E1_ARATH,F4IS54_ARATH UDP-glycosyltransferase 74F1 (EC 2.4.1.-) (Flavonol 7-O-glucosyltransferase),UDP-glycosyltransferase 74F2 (EC 2.4.1.-) (AtSGT1) (Salicylic acid glucosyltransferase 1),UDP-glycosyltransferase 74E2 (EC 2.4.1.-),UDP-glycosyltransferase 74E1 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. {ECO:0000269|PubMed:20798329}. FUNCTION: Possesses quercetin 7-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro. Also active in vitro on benzoates and benzoate derivatives. Has low affinity for the tryptophan precursor anthranilate. Catalyzes the formation of anthranilate glucose ester. Is a minor source of this activity in the plant. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:12475971, ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:18385129}.,FUNCTION: Glycosyltransferase that glucosylates benzoic acid and derivatives. Substrate preference is benzoic acid > salicylic acid (SA) > 3-hydroxybenzoic acid > 4-hydroxybenzoic acid. Catalyzes the formation of both SA 2-O-beta-D-glucoside (SAG) and SA glucose ester (SGE). Has high affinity for the tryptophan precursor anthranilate. Catalyzes the formation of anthranilate glucose ester. Is the major source of this activity in the plant. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:12475971, ECO:0000269|PubMed:17085977, ECO:0000269|PubMed:18226820, ECO:0000269|PubMed:18385129}.,FUNCTION: Glucosyltransferase that acts on the auxin indole-3-butyric acid (IBA). Mediates abiotic stress responses and stress-induced morphological adaptations by regulating auxin homeostasis. Possesses low activity in vitro on jasmonate (JA) and the synthetic auxin analog naphthaleneacetic acid (NAA). {ECO:0000269|PubMed:20798329}. MISCELLANEOUS: Plants overexpressing UGT74F2 show increased susceptibility to the bacterial pathogen P.syringae and reduced accumulation of free SA upon infection.,MISCELLANEOUS: Plants overexpressing UGT74E2 develop more compact rosette structure with shorter petioles, dark-green leaves and a shoot branching phenotype after inflorescence emergence. Mature plants are shorter than wild-type. Over-expression of UGT74E2 increases plant tolerance to osmotic stress. ARA:AT2G43820-MONOMER;MetaCyc:AT2G43820-MONOMER;,ARA:AT1G05680-MONOMER;MetaCyc:AT1G05680-MONOMER; 2.4.1.- 50332,50772,51051,51172,50301 UDP-glycosyltransferase 74F1 (EC 2.4.1.-) (Flavonol 7-O-glucosyltransferase),UDP-glycosyltransferase 74F2 (EC 2.4.1.-) (AtSGT1) (Salicylic acid glucosyltransferase 1),UDP-glycosyltransferase 74E2 (EC 2.4.1.-),UDP-glycosyltransferase 74E1 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; metabolic process [GO:0008152],cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; benzoic acid glucosyltransferase activity [GO:0052641]; nicotinate-O-glucosyltransferase activity [GO:0090704]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; salicylic acid glucosyltransferase (ester-forming) activity [GO:0052639]; salicylic acid glucosyltransferase (glucoside-forming) activity [GO:0052640]; UDP-glucose:4-aminobenzoate acylglucosyltransferase activity [GO:0080002]; UDP-glucosyltransferase activity [GO:0035251]; benzoate metabolic process [GO:0018874]; para-aminobenzoic acid metabolic process [GO:0046482]; positive regulation of seed germination [GO:0010030]; salicylic acid metabolic process [GO:0009696],intracellular membrane-bounded organelle [GO:0043231]; indole-3-butyrate beta-glucosyltransferase activity [GO:0052638]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; cellular hyperosmotic salinity response [GO:0071475]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to hydrogen peroxide [GO:0070301]; cellular response to water deprivation [GO:0042631]; indolebutyric acid metabolic process [GO:0080024]; response to karrikin [GO:0080167]; shoot system morphogenesis [GO:0010016],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],benzoic acid glucosyltransferase activity [GO:0052641]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; salicylic acid glucosyltransferase (glucoside-forming) activity [GO:0052640]; UDP-glucose:4-aminobenzoate acylglucosyltransferase activity [GO:0080002]; UDP-glucosyltransferase activity [GO:0035251]; benzoate metabolic process [GO:0018874]; para-aminobenzoic acid metabolic process [GO:0046482]; salicylic acid metabolic process [GO:0009696] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:12475971}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons and leaf hydathodes. {ECO:0000269|PubMed:20798329}. locus:2043949;,locus:2031983;,locus:6530298131;,locus:2044044; AT2G43840,AT2G43820,AT1G05680,AT1G05675 UDP-Glycosyltransferase Glycosyltransferase (EC 2.4.1.-) Q69JH3 Q69JH3_ORYSJ Os09g0517900 Os09g0517900 OSNPB_090517900 P0217C03.3 ENOG411DR2S SZF1 Q9XEE6,Q93ZS9,Q9LUZ4,A0A1I9LNJ4 C3H29_ARATH,C3H47_ARATH,C3H66_ARATH,A0A1I9LNJ4_ARATH Zinc finger CCCH domain-containing protein 29 (AtC3H29) (AtSZF2),Zinc finger CCCH domain-containing protein 47 (AtC3H47) (AtSZF1),Zinc finger CCCH domain-containing protein 66 (AtC3H66),Salt-inducible zinc finger 1 Increased susceptibility to Botrytis infection. Germination sensitive to ABA; Susceptible to Botrytis cinerea-T. Mengiste-2006 FUNCTION: Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. 66153,64058,66448,71864 Zinc finger CCCH domain-containing protein 29 (AtC3H29) (AtSZF2),Zinc finger CCCH domain-containing protein 47 (AtC3H47) (AtSZF1),Zinc finger CCCH domain-containing protein 66 (AtC3H66),Salt-inducible zinc finger 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to fungus [GO:0050832]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; response to cold [GO:0009409],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200],DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. locus:2065058;,locus:2082068;,locus:2178843; AT2G40140,AT3G55980,AT5G58620 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 33 (OsC3H33) Q688R3 C3H33_ORYSJ Os05g0128200 LOC_Os05g03760 OSJNBa0056I11.7 ENOG411DR2T PFK2 Q9FIK0 PFKA2_ARATH ATP-dependent 6-phosphofructokinase 2 (ATP-PFK 2) (Phosphofructokinase 2) (EC 2.7.1.11) (Phosphohexokinase 2) FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000255|HAMAP-Rule:MF_03186}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4. {ECO:0000255|HAMAP-Rule:MF_03186}. ARA:AT5G47810-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.11; 2.7.1.11 49182 ATP-dependent 6-phosphofructokinase 2 (ATP-PFK 2) (Phosphofructokinase 2) (EC 2.7.1.11) (Phosphohexokinase 2) cytosol [GO:0005829]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; fructose 6-phosphate metabolic process [GO:0006002]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Mostly expressed in roots and stems. {ECO:0000269|PubMed:17485088}. locus:2160897; AT5G47810 6-phosphofructokinase Os09g0479800 protein (Phosphofructokinase-like) (cDNA clone:002-137-B02, full insert sequence),Os04g0469500 protein (Fragment) Q69QS5,A0A0P0WBF4 Q69QS5_ORYSJ,A0A0P0WBF4_ORYSJ Os09g0479800 Os09g0479800 OSNPB_090479800 P0463D04.4 P0463G11.19,Os04g0469500 OSNPB_040469500 ENOG411DR2U Q93Z51 NIC4_ARATH Probable inactive nicotinamidase At3g16190 FUNCTION: Does not possess nicotinamidase activity in vitro. {ECO:0000269|PubMed:17587307}. 21858 Probable inactive nicotinamidase At3g16190 cytoplasm [GO:0005737]; catalytic activity [GO:0003824]; uracil catabolic process [GO:0006212] locus:2094927; AT3G16190 Isochorismatase family Os02g0276200 protein,Os02g0276400 protein A0A0P0VHI0,A0A0P0VHG4 A0A0P0VHI0_ORYSJ,A0A0P0VHG4_ORYSJ Os02g0276200 OSNPB_020276200,Os02g0276400 OSNPB_020276400 ENOG411DR2V MPF21.18 Q84JS7,Q9FG96,Q8GY67,F4I5H5,A0A1P8AQ93,A0A1P8AT45,F4I5H4 Q84JS7_ARATH,Q9FG96_ARATH,Q8GY67_ARATH,F4I5H5_ARATH,A0A1P8AQ93_ARATH,A0A1P8AT45_ARATH,F4I5H4_ARATH Carboxyl-terminal peptidase, putative (DUF239) (Putative carboxyl-terminal peptidase),AT5g50150/MPF21_17 (Gb|AAF04872.1) (NEP-interacting protein, putative (DUF239)),At1g23340 (Carboxyl-terminal proteinase, putative (DUF239)) (Uncharacterized protein At1g23340/F26F24_11),NEP-interacting protein, putative (DUF239),Carboxyl-terminal proteinase, putative (DUF239),Carboxyl-terminal peptidase, putative (DUF239) 53129,47034,45861,33012,33567,40504,52274 Carboxyl-terminal peptidase, putative (DUF239) (Putative carboxyl-terminal peptidase),AT5g50150/MPF21_17 (Gb|AAF04872.1) (NEP-interacting protein, putative (DUF239)),At1g23340 (Carboxyl-terminal proteinase, putative (DUF239)) (Uncharacterized protein At1g23340/F26F24_11),NEP-interacting protein, putative (DUF239),Carboxyl-terminal proteinase, putative (DUF239),Carboxyl-terminal peptidase, putative (DUF239) integral component of membrane [GO:0016021] locus:2019933;,locus:2170091;,locus:2028025;,locus:2026815; AT1G10750,AT5G50150,AT1G23340,AT1G70550 carboxyl-terminal Os06g0474500 protein (Putative ZmEBE-1 protein) (cDNA clone:001-125-D09, full insert sequence) (cDNA clone:J033028L24, full insert sequence),Os01g0547133 protein (Fragment) Q69Y39,A0A0P0V3U9 Q69Y39_ORYSJ,A0A0P0V3U9_ORYSJ Os06g0474500 Os06g0474500 OsJ_21346 OSNPB_060474500 P0021H10.2,Os01g0547133 OSNPB_010547133 ENOG411DR2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os09g0491612 protein,Os08g0510101 protein B9G4A7,A0A0P0XI79 B9G4A7_ORYSJ,A0A0P0XI79_ORYSJ Os09g0491612 OsJ_29841 OSNPB_090491612,Os08g0510101 OSNPB_080510101 ENOG411DR2X CCZ1A,CCZ1B,CCZ1a F4I2S4,C0Z274,Q0WTH0,A0A1P8AUE1 CCZ1A_ARATH,CCZ1B_ARATH,Q0WTH0_ARATH,A0A1P8AUE1_ARATH Vacuolar fusion protein CCZ1 homolog A,Vacuolar fusion protein CCZ1 homolog B,Uncharacterized protein At1g16020 (Vacuolar fusion protein (DUF1712)),Vacuolar fusion protein (DUF1712) FUNCTION: Plays an important role in membrane trafficking through the secretory apparatus. In complex with MON1, acts as a guanine exchange factor (GEF) for RABG3F of the Rab7 protein family. Promotes the exchange of GDP to GTP, converting RABG3F from an inactive GDP-bound form into an active GTP-bound form. The RABG3F active form is involved in protein trafficking from prevacuolar compartments (PVCs) to vacuoles. May serve as a linker between Rab5 and Rab7 protein families in PVCs and mediate PVC maturation. {ECO:0000269|PubMed:24824487}.,FUNCTION: Plays an important role in membrane trafficking through the secretory apparatus. In complex with MON1, acts as a guanine exchange factor (GEF) for RABG3F of the RAB7 protein family. Promotes the exchange of GDP to GTP, converting RABG3F from an inactive GDP-bound form into an active GTP-bound form. The RABG3F active form is involved in protein trafficking from prevacuolar compartments (PVCs) to vacuoles. May serve as a linker between Rab5 and Rab7 protein families in PVCs and mediate PVC maturation. {ECO:0000250|UniProtKB:F4I2S4}. R-ATH-8876198; 57840,55429,40995,36209 Vacuolar fusion protein CCZ1 homolog A,Vacuolar fusion protein CCZ1 homolog B,Uncharacterized protein At1g16020 (Vacuolar fusion protein (DUF1712)),Vacuolar fusion protein (DUF1712) late endosome [GO:0005770]; vesicle [GO:0031982]; guanyl-nucleotide exchange factor activity [GO:0005085]; vesicle-mediated transport [GO:0016192] locus:2200547;,locus:2025782; AT1G16020,AT1G80910 vacuolar fusion protein CCZ1 Vacuolar fusion protein CCZ1 homolog,Os08g0427300 protein Q7EY72,A0A0P0XGF1 CCZ_ORYSJ,A0A0P0XGF1_ORYSJ CCZ1 NP70 Os08g0427300 LOC_Os08g33076 OJ1663_D06.7 OSJNBb0032E15.114,Os08g0427300 OSNPB_080427300 FUNCTION: Plays an important role in membrane trafficking through the secretory apparatus. In complex with MON1, acts as a guanine exchange factor (GEF) for Rab7 protein family. Promotes the exchange of GDP to GTP, converting it from an inactive GDP-bound form into an active GTP-bound form. The active form is involved in protein trafficking from prevacuolar compartments (PVCs) to vacuoles. May serve as a linker between Rab5 and Rab7 protein families in PVCs and mediate PVC maturation. {ECO:0000250|UniProtKB:F4I2S4}. ENOG411DR2Y HAB2,HAB1 Q9LNP9,Q9CAJ0,F4I7L4 P2C07_ARATH,P2C16_ARATH,F4I7L4_ARATH Protein phosphatase 2C 7 (AtPP2C07) (EC 3.1.3.16) (Protein HYPERSENSITIVE TO ABA 2) (Protein phosphatase 2C HAB2) (PP2C HAB2),Protein phosphatase 2C 16 (AtPP2C16) (EC 3.1.3.16) (AtP2C-HA) (Protein HYPERSENSITIVE TO ABA 1) (Protein phosphatase 2C HAB1) (PP2C HAB1),Protein phosphatase 2C family protein Sensitive to ABA-P. Rodriguez-2004 FUNCTION: Key component and repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, seed germination and inhibition of vegetative growth. {ECO:0000250}.,FUNCTION: Key component and repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, seed germination and inhibition of vegetative growth. Confers enhanced sensitivity to drought. {ECO:0000269|PubMed:14731256, ECO:0000269|PubMed:16798945, ECO:0000269|PubMed:16876791, ECO:0000269|PubMed:19033529}. 3.1.3.16 56062,55744,19536 Protein phosphatase 2C 7 (AtPP2C07) (EC 3.1.3.16) (Protein HYPERSENSITIVE TO ABA 2) (Protein phosphatase 2C HAB2) (PP2C HAB2),Protein phosphatase 2C 16 (AtPP2C16) (EC 3.1.3.16) (AtP2C-HA) (Protein HYPERSENSITIVE TO ABA 1) (Protein phosphatase 2C HAB1) (PP2C HAB1),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; abscisic acid-activated signaling pathway [GO:0009738],cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; abscisic acid-activated signaling pathway [GO:0009738],protein serine/threonine phosphatase activity [GO:0004722] TISSUE SPECIFICITY: Expressed in seeds. {ECO:0000269|PubMed:16339800}.,TISSUE SPECIFICITY: Expressed in seeds, roots, stems, leaves and flowers, especially in meristematic tissues, guard cells, embryo and siliques. {ECO:0000269|PubMed:14731256, ECO:0000269|PubMed:16339800, ECO:0000269|PubMed:9862504}. locus:2007943;,locus:2030230;,locus:2823988; AT1G17550,AT1G72770,AT1G17545 phosphatase 2C Protein phosphatase 2C 53 (OsPP2C53) (EC 3.1.3.16) (ABI1-like protein 2) (OsABI-LIKE2) (OsABIL2),Probable protein phosphatase 2C 6 (OsPP2C06) (EC 3.1.3.16) (ABI1-like protein 1) (OsABI-LIKE1) (OsABIL1),Os03g0439250 protein,Os05g0592800 protein Q6L4R7,Q0JLP9,A3AJG5,A0A0P0WR26 P2C53_ORYSJ,P2C06_ORYSJ,A3AJG5_ORYSJ,A0A0P0WR26_ORYSJ PP2C53 ABIL2 Os05g0592800 LOC_Os05g51510 OsJ_018965 OsJ_19760 P0663C08.11,PP2C06 ABIL1 Os01g0583100 LOC_Os01g40094,Os03g0439250 OsJ_11402 OSNPB_030439250,Os05g0592800 OSNPB_050592800 FUNCTION: Protein phosphatase that acts as negative regulator of abscisic acid (ABA) signaling. Involved in the regulation of root architecture development and drought resistance. Can dephosphorylate SAPK8 and SAPK10 in vitro. Together with PYL10, SAPK8 and SAPK10, may form an ABA signaling module involved in stress response. {ECO:0000269|PubMed:26491145}.,FUNCTION: Probable protein phosphatase that may function in abscisic acid (ABA) signaling. {ECO:0000250|UniProtKB:Q6L4R7}. MISCELLANEOUS: Plants overexpressing PP2C53 are insensitive to abscisic acid (ABA), exhibit altered stomatal density and root architecture, and are hypersensitive to drought stress. {ECO:0000269|PubMed:26491145}.,MISCELLANEOUS: Plants overexpressing PP2C06 exhibit dramatically reduced fertility and severe pre-harvest sprouting. {ECO:0000269|PubMed:26491145}. ENOG411DR2Z F4ISU2 F4ISU2_ARATH Early endosome antigen 148614 Early endosome antigen integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686] locus:2045412; AT2G32240 NA Os04g0614700 protein (Fragment),Os04g0614650 protein (Fragment) Q0JA59,A0A0P0WEZ7 Q0JA59_ORYSJ,A0A0P0WEZ7_ORYSJ Os04g0614700 Os04g0614700 OSNPB_040614700,Os04g0614650 OSNPB_040614650 ENOG411DRNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain U-box domain-containing protein 73 (EC 2.3.2.27) (Plant U-box protein 73) (OsPUB73) (RING-type E3 ubiquitin transferase PUB73) Q6K762 PUB73_ORYSJ PUB73 Os02g0490000 OsJ_06787 OSJNBa0048K16.15 FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. {ECO:0000269|PubMed:19825583}. ENOG411E1G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF502) Os12g0482600 protein (Fragment) Q0INC1 Q0INC1_ORYSJ Os12g0482600 Os12g0482600 OSNPB_120482600 ENOG411E1G0 F3H7.9 Q9ZSB9,Q9LPI8 Q9ZSB9_ARATH,Q9LPI8_ARATH F3H7.9 protein (Glutaredoxin family protein) (Uncharacterized protein AT4g10630) (Uncharacterized protein T4F9.90),At1g32760 (F6N18.14) (Glutaredoxin family protein) 36586,33615 F3H7.9 protein (Glutaredoxin family protein) (Uncharacterized protein AT4g10630) (Uncharacterized protein T4F9.90),At1g32760 (F6N18.14) (Glutaredoxin family protein) cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2139252;,locus:2035589; AT4G10630,AT1G32760 Glutaredoxin Os02g0102000 protein A0A0N7KEI6 A0A0N7KEI6_ORYSJ Os02g0102000 OSNPB_020102000 ENOG411E1GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amb_all Pectate lyase (EC 4.2.2.2) (Fragment) A0A0P0VA72 A0A0P0VA72_ORYSJ Os01g0837100 OSNPB_010837100 ENOG411E1GT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1GN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K01183 chitinase EC 3.2.1.14 NA NA NA NA NA NA NA ENOG411E1GM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/calcium exchanger protein Os10g0436900 protein (Sodium/calcium exchanger protein, expressed) (cDNA clone:J023138B21, full insert sequence),Os11g0107266 protein (Fragment),Os01g0880600 protein,Os03g0600500 protein Q337V5,A0A0P0XYH1,A0A0P0VB61,A0A0N7KHM0 Q337V5_ORYSJ,A0A0P0XYH1_ORYSJ,A0A0P0VB61_ORYSJ,A0A0N7KHM0_ORYSJ LOC_Os10g30070 Os10g0436900 OSNPB_100436900,Os11g0107266 OSNPB_110107266,Os01g0880600 OSNPB_010880600,Os03g0600500 OSNPB_030600500 ENOG411E1GG TIP5-1 Q9STX9 TIP51_ARATH Probable aquaporin TIP5-1 (Tonoplast intrinsic protein 5-1) (AtTIP5;1) Short pollen tubes under nitrogen starvation-J. Muschietti-2010 FUNCTION: Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. R-ATH-432047; 26643 Probable aquaporin TIP5-1 (Tonoplast intrinsic protein 5-1) (AtTIP5;1) central vacuole [GO:0042807]; integral component of plasma membrane [GO:0005887]; mitochondrion [GO:0005739]; plant-type vacuole membrane [GO:0009705]; pollen tube [GO:0090406]; urea transmembrane transporter activity [GO:0015204]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; pollen sperm cell differentiation [GO:0048235]; urea transport [GO:0015840] locus:2099595; AT3G47440 Aquaporin Probable aquaporin TIP5-1 (Tonoplast intrinsic protein 5-1) (OsTIP5;1) Q7XU31 TIP51_ORYSJ TIP5;1 Os04g0550800 LOC_Os04g46490 OSJNBb0034G17.11 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411E1GE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Acyl transferase 10 (OsAT10) (EC 2.3.1.-) Q69UE6 AT10_ORYSJ AT10 Os06g0594600 LOC_Os06g39390 OsJ_21858 P0652A05.17 DISRUPTION PHENOTYPE: Reduced seed mass. {ECO:0000269|PubMed:23391577}. FUNCTION: Involved in the incorporation of ferulate into the cell wall. May act as arabinoxylan feruloyl transferase (PubMed:20012086). May function as p-coumaroyl-CoA transferase involved in glucuronoarabinoxylan modification (PubMed:23391577). {ECO:0000269|PubMed:20012086, ECO:0000269|PubMed:23391577}. MISCELLANEOUS: The gain-of-function mutant OsAT10-D (T-DNA tagging) shows significant reduction of ferulate in leaf cell wall and strong increase p-coumarate in young leaf tissue but no discernible phenotypic alterations in vegetative development, lignin content, or lignin composition. {ECO:0000269|PubMed:23391577}. ENOG411DZHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch NA NA NA NA NA NA NA ENOG411EFHZ GRXS3,GRXS8,GRXS4,GRXS5,GRXS7 O23421,O23417,O23419,O23420,Q6NLU2 GRXS3_ARATH,GRXS8_ARATH,GRXS4_ARATH,GRXS5_ARATH,GRXS7_ARATH Monothiol glutaredoxin-S3 (AtGrxS3) (Protein ROXY 11),Monothiol glutaredoxin-S8 (AtGrxS8) (Protein ROXY 15),Monothiol glutaredoxin-S4 (AtGrxS4) (Protein ROXY 13),Monothiol glutaredoxin-S5 (AtGrxS5) (Protein ROXY 12),Monothiol glutaredoxin-S7 (AtGrxS7) (Protein ROXY 14) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 11168,11311,11248,11205,11244 Monothiol glutaredoxin-S3 (AtGrxS3) (Protein ROXY 11),Monothiol glutaredoxin-S8 (AtGrxS8) (Protein ROXY 15),Monothiol glutaredoxin-S4 (AtGrxS4) (Protein ROXY 13),Monothiol glutaredoxin-S5 (AtGrxS5) (Protein ROXY 12),Monothiol glutaredoxin-S7 (AtGrxS7) (Protein ROXY 14) cytoplasm [GO:0005737]; nucleus [GO:0005634]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2130574;,locus:2130544;,locus:2130564;,locus:2130569;,locus:2130554; AT4G15700,AT4G15660,AT4G15680,AT4G15690,AT4G15670 Glutaredoxin NA NA NA NA NA NA NA ENOG411E3K8 ndhG Q95695 NU6C_ARATH NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 6) (NADH-plastoquinone oxidoreductase subunit 6) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity). {ECO:0000250}. ARA:ATCG01080-MONOMER; 1.6.5.- 19214 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 6) (NADH-plastoquinone oxidoreductase subunit 6) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038]; photosynthesis [GO:0015979]; transport [GO:0006810] locus:504954731; ATCG01080 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 6) (NADH-plastoquinone oxidoreductase subunit 6) P0C331 NU6C_ORYSJ ndhG Nip172 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity). {ECO:0000250}. ENOG411E3KM RPS12A,RPS12C Q9S9P1,Q9SKZ3 RS121_ARATH,RS122_ARATH 40S ribosomal protein S12-1,40S ribosomal protein S12-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15377,15329 40S ribosomal protein S12-1,40S ribosomal protein S12-2 cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2200537;,locus:2045417; AT1G15930,AT2G32060 40S ribosomal protein S12 NA NA NA NA NA NA NA ENOG411E3KN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0566000 protein (cDNA clone:002-129-F04, full insert sequence),Os09g0108300 protein Q942Q6,A0A0P0XIE8 Q942Q6_ORYSJ,A0A0P0XIE8_ORYSJ Os01g0566000 OSNPB_010566000 P0697C12.25,Os09g0108300 OSNPB_090108300 ENOG411E3KJ CYTC-2,CYTC-1 Q9T0G2,O23138,B3H4Y9 CYC2_ARATH,CYC1_ARATH,B3H4Y9_ARATH Cytochrome c-2 (Cytochrome c At4g10040),Cytochrome c-1 (Cytochrome c At1g22840),CYTOCHROME C-1 FUNCTION: Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain (By similarity). {ECO:0000250}.,FUNCTION: Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. {ECO:0000256|RuleBase:RU004427}. R-ATH-111457;R-ATH-3299685; 12239,12394,11114 Cytochrome c-2 (Cytochrome c At4g10040),Cytochrome c-1 (Cytochrome c At1g22840),CYTOCHROME C-1 mitochondrial intermembrane space [GO:0005758]; respiratory chain [GO:0070469]; copper ion binding [GO:0005507]; electron carrier activity [GO:0009055]; heme binding [GO:0020037]; mitochondrial electron transport, cytochrome c to oxygen [GO:0006123]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122],cytosol [GO:0005829]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; electron carrier activity [GO:0009055]; heme binding [GO:0020037]; cell proliferation [GO:0008283]; mitochondrial electron transport, cytochrome c to oxygen [GO:0006123]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122],mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; electron carrier activity [GO:0009055]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2140573;,locus:2017729; AT4G10040,AT1G22840 Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex the final protein carrier in the mitochondrial electron-transport chain (By similarity) Cytochrome c,Os01g0885000 protein (Putative cytochrome c) (cDNA clone:J033064H20, full insert sequence) Q0DI31,Q8S0R8 CYC_ORYSJ,Q8S0R8_ORYSJ CC-1 Os05g0420600 LOC_Os05g34770 OsJ_017825 OsJ_18585 OSJNBb0092E21.3 P0426G01.18,Os01g0885000 OsJ_04324 OSNPB_010885000 P0408G07.6 FUNCTION: Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.,FUNCTION: Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. {ECO:0000256|RuleBase:RU004427}. ENOG411E3KE PRA1E Q9FRR1 PRA1E_ARATH PRA1 family protein E (AtPRA1.E) (Prenylated Rab acceptor 4) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 22415 PRA1 family protein E (AtPRA1.E) (Prenylated Rab acceptor 4) endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in hypocotyls, roots, lateral roots, columella cells, leaves and shoot apex. {ECO:0000269|PubMed:18583532}. locus:2025615; AT1G08770 prenylated rab acceptor NA NA NA NA NA NA NA ENOG411E3KD Q9FFT2 CSPLX_ARATH CASP-like protein 2D1 (AtCASPL2D1) 21635 CASP-like protein 2D1 (AtCASPL2D1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:2160200; AT5G54980 CASP-like protein CASP-like protein 2D1 (OsCASPL2D1) Q6YW53 CSPL9_ORYSJ Os02g0219900 LOC_Os02g12760 B1131G07.1 OsJ_005746 P0027A02.30 ENOG411E3KC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flagellar radial spoke protein 3 NA NA NA NA NA NA NA ENOG411E3KB F24B9.26 Q9LQP1 Q9LQP1_ARATH Dessication-induced 1VOC superfamily protein (F24B9.26 protein) (Putative receptor serine/threonine kinase) (Uncharacterized protein At1g07645/F24B9_23) 15388 Dessication-induced 1VOC superfamily protein (F24B9.26 protein) (Putative receptor serine/threonine kinase) (Uncharacterized protein At1g07645/F24B9_23) kinase activity [GO:0016301] locus:1006230726; AT1G07645 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Os03g0277500 protein (Fragment) A0A0P0VW37 A0A0P0VW37_ORYSJ Os03g0277500 OSNPB_030277500 ENOG411E3KX PSAH2,PSAH1 Q9SUI6,Q9SUI7 PSAH2_ARATH,PSAH1_ARATH Photosystem I reaction center subunit VI-2, chloroplastic (PSI-H1),Photosystem I reaction center subunit VI-1, chloroplastic (PSI-H1) Double mutants were intermediate in mean size when compared with the corresponding single mutants.,No drop in total Chl levels.,The level of the xanthophyll cycle pigments (VAZ-pool) was higher than in WT plants.,Phenotype not described.,70% of the WT level of PSI-H is still present in mutant plants.,Mutant plants were in average larger than the WT.,Under long-day conditions mutant plants flowered 3 d earlier than wild type. Early flowering-D. Leister-2002 FUNCTION: Possible role could be the docking of the LHC I antenna complex to the core complex. MetaCyc:MONOMER-1093; 15274,15217 Photosystem I reaction center subunit VI-2, chloroplastic (PSI-H1),Photosystem I reaction center subunit VI-1, chloroplastic (PSI-H1) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I reaction center [GO:0009538]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; photosynthesis [GO:0015979]; response to cytokinin [GO:0009735],chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I reaction center [GO:0009538]; photosynthesis [GO:0015979] locus:2037440;,locus:2093377; AT1G52230,AT3G16140 Photosystem I reaction center subunit Photosystem I reaction center subunit VI, chloroplastic (PSI-H) (Light-harvesting complex I 11 kDa protein) (Protein GOS5) Q0DG05 PSAH_ORYSJ PSAH GOS5 Os05g0560000 LOC_Os05g48630 OJ1115_B06.3 OsJ_018737 OsJ_19524 OSJNBa0001A14.18 FUNCTION: Possible role could be the docking of the LHC I antenna complex to the core complex. ENOG411E3KV MYB114 A0A1P8AQX6 A0A1P8AQX6_ARATH Myb domain protein 114 12598 Myb domain protein 114 DNA binding [GO:0003677] Transcription factor NA NA NA NA NA NA NA ENOG411DXBI MAKR1 Q3E936 MAKR1_ARATH Probable membrane-associated kinase regulator 1 FUNCTION: May negatively regulate brassinosteroid signaling. 36106 Probable membrane-associated kinase regulator 1 cytosol [GO:0005829]; plasma membrane [GO:0005886]; plastid [GO:0009536]; kinase inhibitor activity [GO:0019210]; brassinosteroid mediated signaling pathway [GO:0009742]; lipid metabolic process [GO:0006629]; response to brassinosteroid [GO:0009741] locus:2179719; AT5G26230 membrane-associated kinase regulator Os05g0390600 protein Q75KI0 Q75KI0_ORYSJ Os05g0390600 Os05g0390600 OJ1057_G07.2 OSNPB_050390600 ENOG411E3I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3IM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Os09g0475800 protein (Fragment) A0A0P0XPP6 A0A0P0XPP6_ORYSJ Os09g0475800 OSNPB_090475800 ENOG411E3IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os05g0531200 protein (cDNA clone:001-124-E05, full insert sequence) (cDNA clone:J033046E08, full insert sequence) (cDNA clone:J033136F17, full insert sequence) Q75K55 Q75K55_ORYSJ Os05g0531200 Os05g0531200 OJ1131_E09.15 OsJ_19310 OSJNBa0053E05.4 OSNPB_050531200 ENOG411E3IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0069D17.5 protein (Os04g0373100 protein) Q7XVK3 Q7XVK3_ORYSJ OSJNBa0069D17.5 Os04g0373100 OSNPB_040373100 ENOG411DXPZ Q9SS81 PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 77901 Pentatricopeptide repeat-containing protein At3g09060 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2095309; AT3G09060 Pentatricopeptide repeat-containing protein Os01g0852900 protein (Putative fertility restorer),Os01g0852900 protein (Fragment) Q8W0G9,A0A0N7KE29 Q8W0G9_ORYSJ,A0A0N7KE29_ORYSJ Os01g0852900 Os01g0852900 OsJ_04103 OSNPB_010852900 P0529E05.16,Os01g0852900 OSNPB_010852900 ENOG411DW07 RH33,RH48 O80792,Q9C8S9 RH33_ARATH,RH48_ARATH Putative DEAD-box ATP-dependent RNA helicase 33 (EC 3.6.4.13),Probable DEAD-box ATP-dependent RNA helicase 48 (EC 3.6.4.13) 3.6.4.13 94886,89591 Putative DEAD-box ATP-dependent RNA helicase 33 (EC 3.6.4.13),Probable DEAD-box ATP-dependent RNA helicase 48 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2054688;,locus:2038431; AT2G07750,AT1G63250 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 48 (EC 3.6.4.13),Os02g0825675 protein Q6K7R9,A0A0P0VRT1 RH48_ORYSJ,A0A0P0VRT1_ORYSJ Os02g0826100 LOC_Os02g57980 OsJ_08955 P0452F04.14,Os02g0825675 OSNPB_020825675 ENOG411E418 EXL6 Q9M8T8 EXOL6_ARATH Protein EXORDIUM-like 6 FUNCTION: May play a role in a brassinosteroid-dependent regulation of growth and development. {ECO:0000250}. 36620 Protein EXORDIUM-like 6 apoplast [GO:0048046]; extracellular space [GO:0005615] locus:2075482; AT3G02970 Phosphate-induced protein 1 conserved region NA NA NA NA NA NA NA ENOG411E419 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA wound-induced protein Os11g0591800 protein (Wound-induced protein WIN2, putative, expressed),Barwin, putative, expressed (Os11g0592100 protein) (cDNA clone:001-112-F08, full insert sequence),Barwin, putative, expressed (Os11g0592000 protein) (cDNA clone:J023056K07, full insert sequence) Q2R1V3,Q2R1V1,Q2R1V2 Q2R1V3_ORYSJ,Q2R1V1_ORYSJ,Q2R1V2_ORYSJ LOC_Os11g37940 Os11g0591800 OsJ_34488 OSNPB_110591800,LOC_Os11g37960 Os11g0592100 OSNPB_110592100,LOC_Os11g37950 Os11g0592000 OSNPB_110592000 ENOG411E414 F4JN48 F4JN48_ARATH Selection/upkeep of intraepithelial T-cells protein 35242 Selection/upkeep of intraepithelial T-cells protein locus:2128033; AT4G35680 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E415 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE domain Os08g0563300 protein (Putative Bet1/Sft1-related SNARE (AtBS14a)) (cDNA clone:001-101-C02, full insert sequence) Q6ZBW9 Q6ZBW9_ORYSJ Os08g0563300 OsJ_28301 OSNPB_080563300 P0543D10.30 ENOG411E416 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I reaction center subunit Os07g0148900 protein (Photosystem I protein-like protein) (cDNA clone:001-002-E09, full insert sequence) Q84PB5 Q84PB5_ORYSJ Os07g0148900 OJ1027_G06.2 OsJ_23098 OSNPB_070148900 P0022E03.39 ENOG411E417 Q6NLG3,A0A1P8AWY6,F4I7J3 NDK5_ARATH,A0A1P8AWY6_ARATH,F4I7J3_ARATH Probable nucleoside diphosphate kinase 5 (EC 2.7.4.6) (Nucleoside diphosphate kinase V),Nucleoside diphosphate kinase family protein FUNCTION: Involved in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (By similarity). {ECO:0000250}. ARA:AT1G17410-MONOMER; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Pyrimidine metabolism (00240),Metabolic pathways (01100) 2.7.4.6 16048,14029,19991 Probable nucleoside diphosphate kinase 5 (EC 2.7.4.6) (Nucleoside diphosphate kinase V),Nucleoside diphosphate kinase family protein intracellular [GO:0005622]; ATP binding [GO:0005524]; nucleoside diphosphate kinase activity [GO:0004550]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; UTP biosynthetic process [GO:0006228],nucleoside diphosphate kinase activity [GO:0004550]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; UTP biosynthetic process [GO:0006228] locus:2018832; AT1G17410 nucleoside diphosphate kinase Nucleoside diphosphate kinase (EC 2.7.4.6) Q6Z7E5 Q6Z7E5_ORYSJ Os02g0565100 Os02g0565100 OsJ_07176 OSNPB_020565100 P0020C11.23 ENOG411E410 NFD3 Q8VZT8 RT11_ARATH Probable ribosomal protein S11, mitochondrial (MRP-S11) (S11mt) (Protein NUCLEAR FUSION DEFECTIVE 3, mitochondrial) DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. Male and female gametophyte defective; Rare embryo defective (inferred)-G. Drews-2006 FUNCTION: Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus. {ECO:0000269|PubMed:16698901}. 33926 Probable ribosomal protein S11, mitochondrial (MRP-S11) (S11mt) (Protein NUCLEAR FUSION DEFECTIVE 3, mitochondrial) mitochondrial small ribosomal subunit [GO:0005763]; mRNA 5'-UTR binding [GO:0048027]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; karyogamy [GO:0000741]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; polar nucleus fusion [GO:0010197]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:2826195; AT1G31817 ribosomal protein S11 Os03g0385900 protein (Ribosomal protein S11 containing protein, expressed) (cDNA clone:J023150F21, full insert sequence),Mitochondrial ribosomal protein S11 (Os03g0385900 protein) Q10KG1,P93408 Q10KG1_ORYSJ,P93408_ORYSJ Os03g0385900 LOC_Os03g26860 Os03g0385900 OSNPB_030385900,rps11 Os03g0385900 OsJ_11086 OSNPB_030385900 ENOG411E411 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Coiled-coil domain containing 108 NA NA NA NA NA NA NA ENOG411E412 Q9C5M1 YCED2_ARATH Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic (Protein DUF177B) FUNCTION: May play a role in synthesis, processing and/or stability of 23S rRNA. {ECO:0000250|UniProtKB:Q9LT27}. 25289 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic (Protein DUF177B) chloroplast [GO:0009507]; ribosome biogenesis [GO:0042254] locus:2092256; AT3G19800 Uncharacterized ACR COG1399 OSJNBa0038O10.2 protein (Os04g0525000 protein) (cDNA clone:J013118G14, full insert sequence) Q7XKK5 Q7XKK5_ORYSJ Os04g0525000 OsJ_15516 OSJNBa0038O10.2 OSNPB_040525000 ENOG411E413 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain-containing protein BURP domain-containing protein 10 (OsBURP10) Q5VN46 BURPA_ORYSJ BURP10 Os06g0281800 LOC_Os06g17000 OsJ_20979 OSJNBa0063H02.22 ENOG411E41X MUB3 Q9SW27 MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 (AtMUB3) (Membrane-anchored ub-fold protein 3) (ATGP4) FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. MISCELLANEOUS: Heat stable and remains soluble at temperatures exceeding 90 degrees Celsius. 12836 Membrane-anchored ubiquitin-fold protein 3 (AtMUB3) (Membrane-anchored ub-fold protein 3) (ATGP4) plasma membrane [GO:0005886] TISSUE SPECIFICITY: Ubiquitous, but three fold higher expression in senescing leaves. {ECO:0000269|PubMed:16831869}. locus:2117383; AT4G24990 membrane-anchored ubiquitin-fold protein NA NA NA NA NA NA NA ENOG411E41Y T9C5.90 Q9SCK9 Q9SCK9_ARATH Uncharacterized protein T9C5.90 105345 Uncharacterized protein T9C5.90 locus:2114733; AT3G49490 NA NA NA NA NA NA NA NA ENOG411E41Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain containing protein Os11g0491500 protein (Plastocyanin-like domain containing protein) Q2R428 Q2R428_ORYSJ Os11g0491500 LOC_Os11g29910 OsJ_33932 OSNPB_110491500 ENOG411E41T DREB3 Q9LYD3 DREB3_ARATH Dehydration-responsive element-binding protein 3 (Protein TINY 2) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 26044 Dehydration-responsive element-binding protein 3 (Protein TINY 2) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] locus:2144296; AT5G11590 Dehydration-responsive element-binding protein NA NA NA NA NA NA NA ENOG411E41U AGP31,AGP30 Q9FZA2,P93013 AGP31_ARATH,AGP30_ARATH Non-classical arabinogalactan protein 31 (Hydroxyproline-rich arabinogalactan protein 31),Non-classical arabinogalactan protein 30 (AtAGP30) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but freshly harvested seeds of mutant plants show reduced seed dormancy. {ECO:0000269|PubMed:14535889}. FUNCTION: Proteoglycan that may contribute to the strengthening of cell walls. {ECO:0000269|PubMed:24685714}.,FUNCTION: Proteoglycan required for the timing of seed germination. May function in the abscisic acid (ABA) response. {ECO:0000269|PubMed:14535889}. MISCELLANEOUS: Over-expression of AGP30 severely affects shoot development. {ECO:0000269|PubMed:14535889}. 38489,25761 Non-classical arabinogalactan protein 31 (Hydroxyproline-rich arabinogalactan protein 31),Non-classical arabinogalactan protein 30 (AtAGP30) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; response to jasmonic acid [GO:0009753],cell wall [GO:0005618]; extracellular region [GO:0005576]; regulation of root development [GO:2000280]; regulation of seed dormancy process [GO:2000033] DEVELOPMENTAL STAGE: Expressed in embryos from the initiation of germination. {ECO:0000269|PubMed:14535889}. TISSUE SPECIFICITY: Expressed in vascular bundles of roots, leaves, sepals and stamen filaments, and pistils but not stigma. {ECO:0000269|PubMed:17885091}.,TISSUE SPECIFICITY: Specifically expressed in root tips. {ECO:0000269|PubMed:14535889}. locus:2032180;,locus:2057604; AT1G28290,AT2G33790 Pollen proteins Ole e I like Os01g0726100 protein (cDNA clone:002-104-A05, full insert sequence) Q8S154 Q8S154_ORYSJ Os01g0726100 OsJ_03320 OSNPB_010726100 P0042A10.19 ENOG411E41V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0580100 protein,Os01g0585200 protein (cDNA clone:002-132-G01, full insert sequence) Q5VPM5,Q94D46 Q5VPM5_ORYSJ,Q94D46_ORYSJ Os06g0580100 Os06g0580100 OsJ_21791 OSNPB_060580100 P0566A10.17,Os01g0585200 OSJNBb0024F06.27 OSNPB_010585200 P0712E02.14 ENOG411E41W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family Os05g0592000 protein Q6L4S2 Q6L4S2_ORYSJ Os05g0592000 OsJ_19754 OSNPB_050592000 P0663C08.6 ENOG411E41P F18O21_250 Q9LYL4 Q9LYL4_ARATH Potassium transporter (Uncharacterized protein At3g56290) (Uncharacterized protein At3g56290; F18O21_250) (Uncharacterized protein F18O21_250) 19923 Potassium transporter (Uncharacterized protein At3g56290) (Uncharacterized protein At3g56290; F18O21_250) (Uncharacterized protein F18O21_250) chloroplast organization [GO:0009658]; positive regulation of transcription, DNA-templated [GO:0045893] locus:2078391; AT3G56290 NA Os01g0823600 protein Q8LRD0 Q8LRD0_ORYSJ Os01g0823600 Os01g0823600 OsJ_03910 OSNPB_010823600 P0031D02.18 ENOG411E41Q HVA22J Q8GXE9 HA22J_ARATH HVA22-like protein j (AtHVA22j) 29550 HVA22-like protein j (AtHVA22j) locus:2039315; AT2G36020 HVA22-like protein NA NA NA NA NA NA NA ENOG411E41R TRX9,CXXS2 Q9LXZ8,Q9C9Y6,Q8GXV2 TRH10_ARATH,TRXH9_ARATH,CXXS2_ARATH Putative thioredoxin H10 (AtTrxh10),Thioredoxin H9 (AtTrxh9) (Thioredoxin 9) (AtTRX9),Thioredoxin-like protein CXXS2 (AtCXXS2) (Mono-cysteine thioredoxin 2) DISRUPTION PHENOTYPE: Dwarf plants with short roots and small yellowish leaves. {ECO:0000269|PubMed:20133584}. Roots and leaves of the homozygous mutants were significantly shorter and smaller than wild-type. Root tips of 7-day-old mutant seedlings grown on MS medium with 1% sucrose had a shortened apical meristem and cells were more compact in keeping with noticeably shorter roots. When grown in soil mutant plants were dwarf with small yellowish leaves. Seedling lethal without exogenous sucrose-B. Buchanan-2010 FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.,FUNCTION: Probable thiol-disulfide oxidoreductase that may play a role in intercellular communication due to its ability to move from cell to cell. {ECO:0000269|PubMed:20133584}.,FUNCTION: Possesses low disulfide reductase activity, but efficient protein disulfide isomerase activity. Does not possess deglutathionylation activity. {ECO:0000269|PubMed:18384502}. 17371,15334,17314 Putative thioredoxin H10 (AtTrxh10),Thioredoxin H9 (AtTrxh9) (Thioredoxin 9) (AtTRX9),Thioredoxin-like protein CXXS2 (AtCXXS2) (Mono-cysteine thioredoxin 2) cytoplasm [GO:0005737]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plastid [GO:0009536]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell communication [GO:0007154]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662],cytosol [GO:0005829]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide isomerase activity [GO:0003756]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] TISSUE SPECIFICITY: Ubiquitous.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18384502}. locus:2102579;,locus:2077833;,locus:2064854; AT3G56420,AT3G08710,AT2G40790 Thioredoxin Thioredoxin H4-1 (OsTrxh4-1) (OsTrx01),Thioredoxin H4-2 (OsTrxh4-2) (OsTrx18),Os05g0169000 protein (Fragment) Q9AS75,Q0DKF1,A0A0P0WIK2 TRH41_ORYSJ,TRH42_ORYSJ,A0A0P0WIK2_ORYSJ Os01g0168200 LOC_Os01g07376 OJ1276_B06.16 OsJ_00524 P0028E10.17 P0701D05.44,Os05g0169000 LOC_Os05g07690 OsJ_17272,Os05g0169000 OSNPB_050169000 FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes. ENOG411E41S MHM17.12 Q9LTS1,F4K958 Q9LTS1_ARATH,F4K958_ARATH At5g57000 (DEAD-box ATP-dependent RNA helicase) (Gb|AAF21159.1),DEAD-box ATP-dependent RNA helicase 21037,16026 At5g57000 (DEAD-box ATP-dependent RNA helicase) (Gb|AAF21159.1),DEAD-box ATP-dependent RNA helicase helicase activity [GO:0004386] locus:2164645; AT5G57000 NA Os09g0363700 protein (cDNA clone:J033135K13, full insert sequence) Q6K4D9 Q6K4D9_ORYSJ Os09g0363700 Os09g0363700 OJ1001_G09.10 OJ1506_A04.24 OsJ_29076 OSNPB_090363700 ENOG411E41M EMB1793 Q63Z96 Q63Z96_ARATH At1g76060 (LYR family of Fe/S cluster biogenesis protein) Embryo defective; Preglobular / Globular-D. Meinke-2002 18505 At1g76060 (LYR family of Fe/S cluster biogenesis protein) locus:2204370; AT1G76060 Complex 1 protein (LYR family) Complex 1 protein containing protein, expressed (Os03g0136600 protein) (cDNA clone:001-106-B07, full insert sequence) Q10S37 Q10S37_ORYSJ LOC_Os03g04380 Os03g0136600 OsJ_09323 OSNPB_030136600 ENOG411E41N PLA2-ALPHA Q8S8N6,A0A1P8B0P3 PLA2A_ARATH,A0A1P8B0P3_ARATH Phospholipase A2-alpha (EC 3.1.1.4) (Secretory phospholipase A2-alpha) (AtsPLA2-alpha),Phospholipase A2 family protein WT phenotype. Also no effect on light-induced stomatal opening. Resistant to bacterial infection-S. Rivas-2010 FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. Modulates the trafficking of PIN proteins to the plasma membrane (PubMed:16140037, PubMed:20525850). Negatively regulates MYB30 transcriptional activity and hypersensitive response control (PubMed:20696912). {ECO:0000269|PubMed:16140037, ECO:0000269|PubMed:20525850, ECO:0000269|PubMed:20696912}. MISCELLANEOUS: The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylethanolamine over phosphatidylcholine. ARA:AT2G06925-MONOMER;MetaCyc:AT2G06925-MONOMER; 3.1.1.4; 3.1.1.4 16322,16266 Phospholipase A2-alpha (EC 3.1.1.4) (Secretory phospholipase A2-alpha) (AtsPLA2-alpha),Phospholipase A2 family protein cytoplasmic vesicle [GO:0031410]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644],extracellular region [GO:0005576]; calcium ion binding [GO:0005509]; phospholipase A2 activity [GO:0004623]; arachidonic acid secretion [GO:0050482]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644] TISSUE SPECIFICITY: Ubiquitous but expressed at a low level. {ECO:0000269|PubMed:15748654, ECO:0000269|PubMed:16140037}. locus:505006241; AT2G06925 Phospholipase A2 Phospholipase A2 homolog 3 (EC 3.1.1.4) Q10E50 PLA23_ORYSJ PLA2-III Os03g0708000 LOC_Os03g50030 OsJ_12288 OSJNBb0022E02.7 FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. {ECO:0000269|PubMed:10608658}. ENOG411E41H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E41I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Bet v I family Os08g0374000 protein (cDNA clone:J033121M18, full insert sequence) Q6ZD29 Q6ZD29_ORYSJ Os08g0374000 OsJ_27105 OSNPB_080374000 P0690C12.27 ENOG411E41J RPL31C,RPL31A,RPL31B,MIK19.16 P51420,Q9SLL7,Q9STR1,A8MR49 RL313_ARATH,RL311_ARATH,RL312_ARATH,A8MR49_ARATH 60S ribosomal protein L31-3,60S ribosomal protein L31-1,60S ribosomal protein L31-2,Ribosomal protein L31e family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 13803,13702,13820,9764 60S ribosomal protein L31-3,60S ribosomal protein L31-1,60S ribosomal protein L31-2,Ribosomal protein L31e family protein cell wall [GO:0005618]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],chloroplast [GO:0009507]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2165051;,locus:2052000;,locus:2136809; AT5G56710,AT2G19740,AT4G26230 60S ribosomal protein Os06g0319700 protein (Putative 60S ribosomal protein L31),Os08g0505300 protein (Fragment) Q5Z9Z8,Q0J4L7 Q5Z9Z8_ORYSJ,Q0J4L7_ORYSJ Os06g0319700 OsJ_21149 OSNPB_060319700 P0592B08.23,Os08g0505300 Os08g0505300 OSNPB_080505300 ENOG411E41K Q1PFH6 Q1PFH6_ARATH Uncharacterized protein 35559 Uncharacterized protein locus:2203906; AT1G62530 Plant protein of unknown function (DUF863) NA NA NA NA NA NA NA ENOG411E41D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root cap NA NA NA NA NA NA NA ENOG411E41E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) NA NA NA NA NA NA NA ENOG411E41F REM8,REM9 Q8H2D1,O81778 REM8_ARATH,REM9_ARATH B3 domain-containing protein REM8 (Auxin response factor 24) (Protein REPRODUCTIVE MERISTEM 8),B3 domain-containing protein REM9 (Auxin response factor 23) (Protein REPRODUCTIVE MERISTEM 9) 52025,51457 B3 domain-containing protein REM8 (Auxin response factor 24) (Protein REPRODUCTIVE MERISTEM 8),B3 domain-containing protein REM9 (Auxin response factor 23) (Protein REPRODUCTIVE MERISTEM 9) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chloroplast envelope [GO:0009941]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] locus:2124824;,locus:2124839; AT4G31680,AT4G31690 B3 domain-containing protein B3 domain-containing protein Os03g0212300,B3 domain-containing protein LOC_Os02g10420,Os02g0197750 protein (Fragment),Os04g0346900 protein Q10Q26,A3A463,A0A0P0VG04,A0A0P0W8Z4 Y3123_ORYSJ,Y2042_ORYSJ,A0A0P0VG04_ORYSJ,A0A0P0W8Z4_ORYSJ Os03g0212300 LOC_Os03g11370,LOC_Os02g10420 OJ1524_D08.32 OsJ_05761 P0026H03.7,Os02g0197750 OSNPB_020197750,Os04g0346900 OSNPB_040346900 ENOG411E41G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0708000 protein (cDNA clone:002-155-B12, full insert sequence) Q8S3R6 Q8S3R6_ORYSJ 49D11.16 Os02g0708000 OsJ_08091 OSJNBb0060O16.23 OSNPB_020708000 ENOG411E41A YUP8H12R.14 O64527,A0A1P8AWV1 Y1926_ARATH,A0A1P8AWV1_ARATH UPF0678 fatty acid-binding protein-like protein At1g79260,Nitrobindin heme-binding domain protein FUNCTION: May play a role in the intracellular transport of hydrophobic ligands. {ECO:0000305}. 18486,20073 UPF0678 fatty acid-binding protein-like protein At1g79260,Nitrobindin heme-binding domain protein cytosol [GO:0005829]; transport [GO:0006810] locus:2207465; AT1G79260 UPF0678 fatty acid-binding protein-like protein Os01g0679600 protein,Os01g0679600 protein (cDNA clone:001-106-B12, full insert sequence) Q5QM86,Q5QM87 Q5QM86_ORYSJ,Q5QM87_ORYSJ B1144G04.39-1 Os01g0679600 OSNPB_010679600,B1144G04.39-2 Os01g0679600 OsJ_03010 OSNPB_010679600 ENOG411E41B TIC20-II O82251 TI202_ARATH Protein TIC 20-II, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-II) (AtTIC20-II) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21395885}. FUNCTION: May be involved in protein precursor import into chloroplasts. Not redundant with TIC20-I, TIC20-IV or TIC20-V. 22912 Protein TIC 20-II, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-II) (AtTIC20-II) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; protein transport [GO:0015031] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21395885}. TISSUE SPECIFICITY: Expressed in leaves, siliques and roots. {ECO:0000269|PubMed:21395885}. locus:2043353; AT2G47840 Inherit from NOG: protein transport NA NA NA NA NA NA NA ENOG411E41C PH1 Q9ST43 PH1_ARATH Pleckstrin homology domain-containing protein 1 (AtPH1) FUNCTION: Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides. {ECO:0000269|PubMed:11001876}. 16811 Pleckstrin homology domain-containing protein 1 (AtPH1) cytoplasm [GO:0005737]; phosphatidylinositol-3-phosphate binding [GO:0032266] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|Ref.1}. locus:2060625; AT2G29700 Pleckstrin homology domain-containing protein NA NA NA NA NA NA NA ENOG411ECDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os10g0157200 protein,Os10g0155900 protein A0A0P0XSI9,A0A0P0XS57 A0A0P0XSI9_ORYSJ,A0A0P0XS57_ORYSJ Os10g0157200 OSNPB_100157200,Os10g0155900 OSNPB_100155900 ENOG411ECDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os07g0242600 protein (cDNA clone:J013037K22, full insert sequence) Q8GRM6 Q8GRM6_ORYSJ P0418E08.127 OJ1341_A08.105 Os07g0242600 OsJ_23673 OSNPB_070242600 ENOG411ECDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411ECDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os03g0598650 protein A0A0P0W0L8 A0A0P0W0L8_ORYSJ Os03g0598650 OSNPB_030598650 ENOG411ECDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411ECDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphotransferase enzyme family NA NA NA NA NA NA NA ENOG411DXP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3133) Os03g0334200 protein (Fragment) A0A0N7KH79,A0A0P0VXZ2 A0A0N7KH79_ORYSJ,A0A0P0VXZ2_ORYSJ Os03g0334200 OSNPB_030334200 ENOG411DXP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin NA NA NA NA NA NA NA ENOG411DXP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin fusion degradation protein UFD1 Os01g0144500 protein (Fragment) A0A0P0UY76 A0A0P0UY76_ORYSJ Os01g0144500 OSNPB_010144500 ENOG411EHM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EHM3 Q9ZNU5 Q9ZNU5_ARATH At2g01610 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At2g01610) 23954 At2g01610 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At2g01610) enzyme inhibitor activity [GO:0004857] locus:2049597; AT2G01610 enzyme inhibitor pectinesterase pectinesterase inhibitor NA NA NA NA NA NA NA ENOG411DWTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os04g0691300 protein (Fragment) A0A0P0WGZ5 A0A0P0WGZ5_ORYSJ Os04g0691300 OSNPB_040691300 ENOG411DWTB Q940U5 Q940U5_ARATH At1g27700/T22C5_14 (Syntaxin/t-SNARE family protein) 34052 At1g27700/T22C5_14 (Syntaxin/t-SNARE family protein) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; Golgi vesicle transport [GO:0048193]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] locus:2199196; AT1G27700 syntaxin 6 N-terminal domain containing protein expressed Expressed protein (Os10g0343100 protein) (cDNA clone:J023117B09, full insert sequence),Expressed protein (Os03g0207200 protein) Q339M7,Q10Q73 Q339M7_ORYSJ,Q10Q73_ORYSJ LOC_Os10g20240 Os10g0343100 OSNPB_100343100,LOC_Os03g10920 Os03g0207200 OsJ_09850 OSNPB_030207200 ENOG411DWTA MSH1 Q84LK0,A0A1I9LQY1 MSH1_ARATH,A0A1I9LQY1_ARATH DNA mismatch repair protein MSH1, mitochondrial (AtMSH1) (MutS protein homolog 1) (Protein CHLOROPLAST MUTATOR),MUTL protein homolog 1 DISRUPTION PHENOTYPE: Variegated plants and appearance of specific new restriction fragments in the mitochondrial genome. {ECO:0000269|PubMed:12730382, ECO:0000269|PubMed:1356535}. Variegated leaves-S. Mackenzie-2003 FUNCTION: DNA mismatch repair protein specifically involved in maintenance of mitochondrial genome configuration by controlling specific rearranged portion. Functions by suppressing asymmetric recombination at some repeat pairs. {ECO:0000269|PubMed:12730382, ECO:0000269|PubMed:16830098, ECO:0000269|PubMed:19822729, ECO:0000269|PubMed:20139171, ECO:0000269|PubMed:22426777}. 123920,96149 DNA mismatch repair protein MSH1, mitochondrial (AtMSH1) (MutS protein homolog 1) (Protein CHLOROPLAST MUTATOR),MUTL protein homolog 1 chloroplast [GO:0009507]; mismatch repair complex [GO:0032300]; mitochondrion [GO:0005739]; plastid [GO:0009536]; thylakoid membrane [GO:0042651]; ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; heteroduplex DNA loop binding [GO:0000404]; maintenance of DNA repeat elements [GO:0043570]; mismatch repair [GO:0006298]; mitochondrial DNA metabolic process [GO:0032042]; mitochondrial genome maintenance [GO:0000002]; response to heat [GO:0009408],ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] locus:2087193; AT3G24320 DNA mismatch repair Os04g0507000 protein Q0JBW2 Q0JBW2_ORYSJ Os04g0507000 Os04g0507000 OSNPB_040507000 ENOG411DWTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os09g0530300 protein (Putative Cytochrome P450) (cDNA clone:J013099E24, full insert sequence) (cDNA clone:J013161I12, full insert sequence),Os09g0530275 protein Q69NF3,A0A0P0XPF8 Q69NF3_ORYSJ,A0A0P0XPF8_ORYSJ Os09g0530300 Os09g0530300 OJ1531_B07.29 OSNPB_090530300,Os09g0530275 OSNPB_090530275 ENOG411DWTF CRRSP39,SUVR1,SUVR2,SUVR4 Q6E263,Q946J2,Q9FNC7,Q8W595,F4K7E3,A0A1P8BEV9,A0A1P8BEV8,F4K7E7,A0A1P8BEV2,A0A1P8ANQ7,A0A1I9LTG2,A0A1I9LTG4,A0A1I9LTG1,F4J3N8,A0A1I9LTG3 CRR39_ARATH,SUVR1_ARATH,SUVR2_ARATH,SUVR4_ARATH,F4K7E3_ARATH,A0A1P8BEV9_ARATH,A0A1P8BEV8_ARATH,F4K7E7_ARATH,A0A1P8BEV2_ARATH,A0A1P8ANQ7_ARATH,A0A1I9LTG2_ARATH,A0A1I9LTG4_ARATH,A0A1I9LTG1_ARATH,F4J3N8_ARATH,A0A1I9LTG3_ARATH Cysteine-rich repeat secretory protein 39 (Plasmodesmata-located protein 4) (PDLP4),Probable inactive histone-lysine N-methyltransferase SUVR1 (Protein SET DOMAIN GROUP 13) (Suppressor of variegation 3-9-related protein 1) (Su(var)3-9-related protein 1),Probable inactive histone-lysine N-methyltransferase SUVR2 (Protein SET DOMAIN GROUP 18) (Suppressor of variegation 3-9-related protein 2) (Su(var)3-9-related protein 2),Histone-lysine N-methyltransferase SUVR4 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 31) (Suppressor of variegation 3-9-related protein 4) (Su(var)3-9-related protein 4),SET-domain containing protein lysine methyltransferase family protein,Histone-lysine N-methyltransferase SUVR2-like protein This mutant does not show any obvious abnormal growth or developmental phenotype. FUNCTION: Modulates cell-to-cell trafficking. {ECO:0000250}.,FUNCTION: Probable inactive histone-lysine methyltransferase that acts as regulator of transctiptional gene silencing independently of histone H3K9 methylation. Contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. {ECO:0000250|UniProtKB:Q9FNC7}.,FUNCTION: Probable inactive histone-lysine methyltransferase that acts as regulator of transctiptional gene silencing independently of histone H3K9 methylation. Contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. Forms a complex with SUVR1 and associates with the SNF2-related chromatin-remodeling proteins CHR19, CHR27, and CHR28, thereby mediating nucleosome positioning and transcriptional silencing. Does not possess histone-lysine methyltransferase activity in vitro, and the conserved catalytic sites of SUVR2 are dispensable for its function in transcriptional gene silencing. {ECO:0000269|PubMed:25420628}.,FUNCTION: Histone methyltransferase that converts monomethylated 'Lys-9' of histone H3 (H3K9me1) to dimethylated 'Lys-9' (H3K9me2) in the absence of bound ubiquitin, and to trimethylated 'Lys-9' (H3K9me3) in the presence of bound ubiquitin. Acts in a locus-specific manner and contributes to the transcriptional silencing of pseudogenes and transposons. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. {ECO:0000269|PubMed:21423664}. R-ATH-2559582;R-ATH-3214841; 2.1.1.43 35264,82753,79363,55855,81980,71530,79845,77228,69395,70650,51002,52638,54219,52950,55542 Cysteine-rich repeat secretory protein 39 (Plasmodesmata-located protein 4) (PDLP4),Probable inactive histone-lysine N-methyltransferase SUVR1 (Protein SET DOMAIN GROUP 13) (Suppressor of variegation 3-9-related protein 1) (Su(var)3-9-related protein 1),Probable inactive histone-lysine N-methyltransferase SUVR2 (Protein SET DOMAIN GROUP 18) (Suppressor of variegation 3-9-related protein 2) (Su(var)3-9-related protein 2),Histone-lysine N-methyltransferase SUVR4 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 31) (Suppressor of variegation 3-9-related protein 4) (Su(var)3-9-related protein 4),SET-domain containing protein lysine methyltransferase family protein,Histone-lysine N-methyltransferase SUVR2-like protein integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transport [GO:0006810]; viral process [GO:0016032],chromosome [GO:0005694]; nucleolus [GO:0005730]; histone-lysine N-methyltransferase activity [GO:0018024]; identical protein binding [GO:0042802]; zinc ion binding [GO:0008270]; gene silencing by RNA [GO:0031047],chromosome [GO:0005694]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; RNA-directed DNA methylation [GO:0080188],chromosome [GO:0005694]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; histone lysine methylation [GO:0034968],chloroplast [GO:0009507]; chromosome [GO:0005694]; nucleolus [GO:0005730]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270],chromosome [GO:0005694]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Highly expressed in seeds and roots. {ECO:0000269|PubMed:19704520}. locus:2100870;,locus:2024229;,locus:2100885;,locus:2172502; AT3G04370,AT1G04050,AT5G43990,AT3G04380 Histone-lysine n-methyltransferase Os02g0621100 protein (Putative SET domain protein SUVR2) (cDNA clone:J023086A12, full insert sequence),Os04g0692900 protein (Fragment),Os02g0496700 protein Q6K9F7,A0A0P0WH17,A0A0P0VJ80 Q6K9F7_ORYSJ,A0A0P0WH17_ORYSJ,A0A0P0VJ80_ORYSJ Os02g0621100 Os02g0621100 OJ1234_B11.9 OJ1372_D06.34 OsJ_07564 OSNPB_020621100,Os04g0692900 OSNPB_040692900,Os02g0496700 OSNPB_020496700 ENOG411DWTE FH15A,FH21B,FH15B,FH16,FH19,FH20,FH21A,AtFH16,MBK20.23,MBK20.9,MBK20.20,MBK20.22 P0C5K2,P0C5K5,P0C5K3,Q9FF15,Q9FF14,Q9FLQ7,P0C5K4,A0A1R7T3E6,A0A1R7T3E7,F4K851,A0A1P8BH35,A0A1P8BD82,A0A1P8BDL7,A0A1P8BD84 FH15A_ARATH,FH21B_ARATH,FH15B_ARATH,FH16_ARATH,FH19_ARATH,FH20_ARATH,FH21A_ARATH,A0A1R7T3E6_ARATH,A0A1R7T3E7_ARATH,F4K851_ARATH,A0A1P8BH35_ARATH,A0A1P8BD82_ARATH,A0A1P8BDL7_ARATH,A0A1P8BD84_ARATH Formin-like protein 15a (AtFH15a),Formin-like protein 21b (AtFH21b),Putative formin-like protein 15b (AtFH15b),Formin-like protein 16 (AtFH16),Formin-like protein 19 (AtFH19),Formin-like protein 20 (AtFH20),Putative formin-like protein 21a (AtFH21a),Formin-like protein 45972,45233,39474,79235,52410,178147,49276,64806,79885,76128,88765,175802,97093,182558 Formin-like protein 15a (AtFH15a),Formin-like protein 21b (AtFH21b),Putative formin-like protein 15b (AtFH15b),Formin-like protein 16 (AtFH16),Formin-like protein 19 (AtFH19),Formin-like protein 20 (AtFH20),Putative formin-like protein 21a (AtFH21a),Formin-like protein actin binding [GO:0003779],actin binding [GO:0003779]; actin nucleation [GO:0045010]; barbed-end actin filament capping [GO:0051016],phosphoprotein phosphatase activity [GO:0004721] locus:2160329;,locus:2177801;,locus:2160284; AT5G07650,AT5G07765,AT5G07645,AT5G07770,AT5G07780,AT5G07740,AT5G07760 Formin-like protein Os03g0428400 protein A0A0P0VZN8 A0A0P0VZN8_ORYSJ Os03g0428400 OSNPB_030428400 ENOG411DWTD SULTR2;2,SULTR2;1 P92946,O04722 SUT22_ARATH,SUT21_ARATH Sulfate transporter 2.2 (AST56) (AtH14),Sulfate transporter 2.1 (AST68) FUNCTION: Low-affinity H(+)/sulfate cotransporter that may be involved in the distribution of sulfate from vascular bundles to the palisade cells of the leaves. Plays a central role in the regulation of sulfate assimilation. {ECO:0000269|PubMed:10929111}.,FUNCTION: Low-affinity H(+)/sulfate cotransporter that may be involved in root-to-shoot translocation of sulfate. Plays a central role in the regulation of sulfate assimilation. {ECO:0000269|PubMed:10929111}. R-ATH-174362;R-ATH-427601; 74498,74068 Sulfate transporter 2.2 (AST56) (AtH14),Sulfate transporter 2.1 (AST68) integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293]; sulfate transmembrane transport [GO:1902358] TISSUE SPECIFICITY: Expressed in the phloem in roots and in the phloem of vascular bundles in leaves. {ECO:0000269|PubMed:10929111}.,TISSUE SPECIFICITY: Expressed in root cap, central cylinder of roots and in vascular tissues of leaves. {ECO:0000269|PubMed:10929111, ECO:0000269|PubMed:9380766}. locus:2029496;,locus:2184158; AT1G77990,AT5G10180 sulfate transporter Os03g0195300 protein (Sulfate transporter 2.1, putative, expressed),Os03g0195500 protein (Sulfate transporter 2.1, putative, expressed),Os03g0195450 protein (Fragment) Q10QI4,Q10QI2,A0A0N7KGR6 Q10QI4_ORYSJ,Q10QI2_ORYSJ,A0A0N7KGR6_ORYSJ LOC_Os03g09930 Os03g0195300 OSNPB_030195300,LOC_Os03g09940 Os03g0195500 OSNPB_030195500,Os03g0195450 OSNPB_030195450 ENOG411DWTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0177500 protein B9FZC4 B9FZC4_ORYSJ Os08g0177500 OsJ_26243 OSNPB_080177500 ENOG411DWTJ CSN3,COP13 Q8W575,F4K5I3 CSN3_ARATH,F4K5I3_ARATH COP9 signalosome complex subunit 3 (Signalosome subunit 3) (Protein FUSCA 11),Proteasome component (PCI) domain protein In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,In the homozygous progeny dark purple seeds.,Mutation is lethal in the homozygous state.,constitutive photomorphogenesis,In the homozygous mutant progeny CSN3 CSN1 and CSN5 were all absent from the COP9 signalosome although CSN5 could be found exclusively in the monomeric form. Seedling lethal; Red seedlings due anthocyanin accumulation-X. Deng-2001 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. {ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:11684663}. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 47741,39326 COP9 signalosome complex subunit 3 (Signalosome subunit 3) (Protein FUSCA 11),Proteasome component (PCI) domain protein COP9 signalosome [GO:0008180]; cytosol [GO:0005829]; multicellular organism development [GO:0007275]; positive regulation of G2/M transition of mitotic cell cycle [GO:0010971]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]; ubiquitin-dependent protein catabolic process [GO:0006511],proteasome complex [GO:0000502] locus:2145638; AT5G14250 COP9 signalosome complex subunit Os08g0119000 protein (Putative COP9 complex subunit 3, FUS11) (cDNA clone:001-017-E02, full insert sequence) (cDNA clone:J023126C02, full insert sequence) Q6ZJ47 Q6ZJ47_ORYSJ Os08g0119000 Os08g0119000 OJ1005_B05.20 OsJ_25844 OSNPB_080119000 ENOG411DWTI RGI3,MDA7.8 C0LGR3,Q8VYG7,F4K6B8 RGI3_ARATH,Q8VYG7_ARATH,F4K6B8_ARATH LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3),Leucine-rich receptor-like protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor protein kinase),Leucine-rich receptor-like protein kinase family protein FUNCTION: Acts as receptor of RGF1, a peptide hormone that maintains the postembryonic root stem cell niche by regulating the expression levels and patterns of the transcription factor PLETHORA (PLT) (PubMed:27229312, PubMed:27229311). Links RGF1 signal with its downstream components (PubMed:27229311). {ECO:0000269|PubMed:27229311, ECO:0000269|PubMed:27229312}. 2.7.11.1 119529,103990,119331 LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3),Leucine-rich receptor-like protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor protein kinase),Leucine-rich receptor-like protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2131518;,locus:2161825; AT4G26540,AT5G56040 LRR receptor-like serine threonine-protein kinase Os09g0479200 protein (Fragment),Os08g0493800 protein (Fragment) Q0J0X4,Q0J4S7 Q0J0X4_ORYSJ,Q0J4S7_ORYSJ Os09g0479200 OSNPB_090479200,Os08g0493800 Os08g0493800 OSNPB_080493800 ENOG411DWTH PBL27 Q1PDV6 PBL27_ARATH Serine/threonine-protein kinase PBL27 (EC 2.7.11.1) (PBS1-like protein 27) (Receptor-like cytoplasmic kinase PBL27) DISRUPTION PHENOTYPE: Impaired chitin-induced defense responses such as MAPK activation (e.g. MPK3/6) and callose deposition leading to reduced disease resistance against fungal (e.g. A.brassicicola) and bacterial (e.g. P.syringae pv. tomato DC3000 hrcC) infections. {ECO:0000269|PubMed:24750441}. FUNCTION: Receptor-like cytoplasmic kinase involved in the transduction of signal between the host cell surface chitin receptor complex CERK1-LYK5 and the intracellular MAPKKK5-dependent mitogen-activated protein kinase (MAPK) cascade that leads to chitin-induced immunity (PubMed:24750441, PubMed:27679653). Phosphorylates and activates MAPKKK5 when phosphorylated by CERK1 after elicitation by chitin (PubMed:27679653). {ECO:0000269|PubMed:24750441, ECO:0000269|PubMed:27679653}. R-ATH-446652; 2.7.11.1 55931 Serine/threonine-protein kinase PBL27 (EC 2.7.11.1) (PBS1-like protein 27) (Receptor-like cytoplasmic kinase PBL27) anchored component of plasma membrane [GO:0046658]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; cellular response to chitin [GO:0071323]; innate immune response [GO:0045087]; MAPK cascade involved in innate immune response [GO:0035420]; positive regulation of defense response to bacterium [GO:1900426]; protein phosphorylation [GO:0006468]; regulation of defense response to fungus [GO:1900150] locus:2183018; AT5G18610 serine threonine-protein kinase Receptor-like cytoplasmic kinase 185 (OsRLCK185) (EC 2.7.11.1),Os01g0936100 protein (cDNA clone:J033035N01, full insert sequence),Os05g0372100 protein (Fragment),Os01g0936100 protein (Fragment) Q6I5Q6,Q5JMQ1,A0A0N7KKN3,A0A0P0VCG2 RK185_ORYSJ,Q5JMQ1_ORYSJ,A0A0N7KKN3_ORYSJ,A0A0P0VCG2_ORYSJ RLCK185 Os05g0372100 LOC_Os05g30870 OSJNBa0025P09.5,Os01g0936100 OsJ_04686 OSNPB_010936100 P0492G09.34,Os05g0372100 OSNPB_050372100,Os01g0936100 OSNPB_010936100 FUNCTION: Functions as an immediate downstream signaling partner of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity. Is required for chitin-induced activation of MPK3 and MPK6. Participates to the activation of defense genes during response to PGN and chitin. {ECO:0000269|PubMed:23498959}. ENOG411DWTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Membrane transport protein Probable auxin efflux carrier component 5b (OsPIN5b) (OsPIN5c) D5A7J3 PIN5B_ORYSJ PIN5B Os09g0505400 LOC_Os09g32770 FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000305}. ENOG411DWTM PTP1 O82656,F4IA41 PTP1_ARATH,F4IA41_ARATH Protein-tyrosine-phosphatase PTP1 (EC 3.1.3.48) (Protein tyrosine phosphatase 1) (AtPTP1),Protein tyrosine phosphatase 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19789277}. FUNCTION: Protein-tyrosine-phosphatase that dephosphorylates and probably inhibits MPK6 in non-oxidative stress conditions. In association with MKP1, represses salicylic acid (SA) and camalexin biosynthesis, thus modulating defense response. May also repress MPK3. Dephosphorylates and inactivates MPK4 in vitro. {ECO:0000269|PubMed:10759527, ECO:0000269|PubMed:12857797, ECO:0000269|PubMed:19789277, ECO:0000269|PubMed:9596642}. R-ATH-6798695; 3.1.3.48 37799,31273 Protein-tyrosine-phosphatase PTP1 (EC 3.1.3.48) (Protein tyrosine phosphatase 1) (AtPTP1),Protein tyrosine phosphatase 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; MAP kinase tyrosine phosphatase activity [GO:0033550]; protein tyrosine phosphatase activity [GO:0004725]; defense response [GO:0006952]; intracellular signal transduction [GO:0035556]; negative regulation of defense response [GO:0031348],protein tyrosine phosphatase activity [GO:0004725] TISSUE SPECIFICITY: Expressed in roots, stems and flowers, and at low levels in leaves. {ECO:0000269|PubMed:9596642}. locus:2012991; AT1G71860 phosphatase Os11g0180200 protein,Os12g0174800 protein (Protein-tyrosine phosphatase containing protein, expressed) (cDNA clone:002-103-E09, full insert sequence) (cDNA clone:002-105-D08, full insert sequence) Q0IU77,Q2QX07 Q0IU77_ORYSJ,Q2QX07_ORYSJ Os11g0180200 OSNPB_110180200,LOC_Os12g07590 Os12g0174800 OsJ_35396 OSNPB_120174800 ENOG411DWTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) A0A0N7KLT1 A0A0N7KLT1_ORYSJ Os06g0227250 OSNPB_060227250 ENOG411DWTR HSPRO2,HSPRO1 O04203,Q9LY61 HSPR2_ARATH,HSPR1_ARATH Nematode resistance protein-like HSPRO2 (AKINbetagamma-interacting protein 2) (Ortholog of sugar beet HS1 PRO-1 protein 2) (Protein Hs1pro-2),Nematode resistance protein-like HSPRO1 (AKINbetagamma-interacting protein 1) (Ortholog of sugar beet HS1 PRO-1 protein 1) (Protein Hs1pro-1) DISRUPTION PHENOTYPE: Shows high sensibility to P.syringae pv. tomato infection. {ECO:0000269|PubMed:17977154}. FUNCTION: Positive regulator of basal resistance. {ECO:0000269|PubMed:17977154}.,FUNCTION: Positive regulator of basal resistance. {ECO:0000250}. 49244,48788 Nematode resistance protein-like HSPRO2 (AKINbetagamma-interacting protein 2) (Ortholog of sugar beet HS1 PRO-1 protein 2) (Protein Hs1pro-2),Nematode resistance protein-like HSPRO1 (AKINbetagamma-interacting protein 1) (Ortholog of sugar beet HS1 PRO-1 protein 1) (Protein Hs1pro-1) cytoplasm [GO:0005737]; defense response to bacterium, incompatible interaction [GO:0009816]; response to oxidative stress [GO:0006979]; response to salicylic acid [GO:0009751],cytoplasm [GO:0005737]; defense response [GO:0006952] locus:2061221;,locus:2081988; AT2G40000,AT3G55840 defense response Os01g0855600 protein (Putative nematode-resistance protein) (cDNA clone:J013095E24, full insert sequence) Q7E5I4 Q7E5I4_ORYSJ Os01g0855600 Os01g0855600 OsJ_04117 OSNPB_010855600 ENOG411DWTQ A0A1P8B3N6,A0A1P8B3P8,F4JW21,F4JW20 A0A1P8B3N6_ARATH,A0A1P8B3P8_ARATH,F4JW21_ARATH,F4JW20_ARATH Spatacsin carboxy-terminus protein 354732,267477,280332,355032 Spatacsin carboxy-terminus protein locus:2122511; AT4G39420 Inherit from KOG: spastic paraplegia 11 (autosomal recessive) Os01g0182900 protein (Fragment) A0A0P0UZE9 A0A0P0UZE9_ORYSJ Os01g0182900 OSNPB_010182900 ENOG411DWTP SAC3B F4JAU2,A0A1I9LTD0,A0A1I9LTD1,A0A178V7S6 SAC3B_ARATH,A0A1I9LTD0_ARATH,A0A1I9LTD1_ARATH,A0A178V7S6_ARATH SAC3 family protein B,SAC3/GANP/Nin1/mts3/eIF-3 p25 family DISRUPTION PHENOTYPE: No visible phenotype. Sac3a, sac3b and sac3c triple mutants show no visible phenotype. {ECO:0000269|PubMed:19843313}. FUNCTION: Component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (PubMed:19843313). {ECO:0000269|PubMed:19843313}. 189932,187878,141807,168166 SAC3 family protein B,SAC3/GANP/Nin1/mts3/eIF-3 p25 family nuclear periphery [GO:0034399] locus:2082485; AT3G06290 SAC3 GANP family protein Os07g0646000 protein (Fragment) A0A0P0X9L6 A0A0P0X9L6_ORYSJ Os07g0646000 OSNPB_070646000 ENOG411DWTW CDA5,CDA9,CDA6,CDA4,CDA3,CDA7,CDA1,CDA2,CDA8 Q9S7L8,Q9S789,Q9SU86,Q9S7S2,Q9S847,Q9SU87,O65896,O65571,Q9XEX4,F4JNN8 CDA5_ARATH,CDA9_ARATH,CDA6_ARATH,CDA4_ARATH,CDA3_ARATH,CDA7_ARATH,CDA1_ARATH,CDA2_ARATH,CDA8_ARATH,F4JNN8_ARATH Cytidine deaminase 5 (EC 3.5.4.5),Probable inactive cytidine deaminase 9,Cytidine deaminase 6 (EC 3.5.4.5),Probable inactive cytidine deaminase 4,Cytidine deaminase 3 (EC 3.5.4.5),Cytidine deaminase 7 (EC 3.5.4.5),Cytidine deaminase 1 (At-CDA1) (EC 3.5.4.5),Cytidine deaminase 2 (EC 3.5.4.5),Cytidine deaminase 8 (EC 3.5.4.5),Cytidine/deoxycytidylate deaminase family protein Susceptible to bacterial infection-R. Cameron-2009 FUNCTION: This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. {ECO:0000250}.,FUNCTION: This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. Functions as a conventional cytidine deaminase. Has no affinity for RNA and is not involved in RNA-editing by C-to-U deamination. {ECO:0000269|PubMed:10024464, ECO:0000269|PubMed:10469156, ECO:0000269|Ref.3}. ARA:AT4G29640-MONOMER;,ARA:AT4G29580-MONOMER;,ARA:AT4G29610-MONOMER;,ARA:AT4G29650-MONOMER;,ARA:AT4G29630-MONOMER;,ARA:AT2G19570-MONOMER;MetaCyc:AT2G19570-MONOMER;,ARA:AT4G29620-MONOMER;,ARA:AT4G29570-MONOMER; 3.5.4.5 38081,32657,32044,27226,24179,33726,32582,37106,32276,49729 Cytidine deaminase 5 (EC 3.5.4.5),Probable inactive cytidine deaminase 9,Cytidine deaminase 6 (EC 3.5.4.5),Probable inactive cytidine deaminase 4,Cytidine deaminase 3 (EC 3.5.4.5),Cytidine deaminase 7 (EC 3.5.4.5),Cytidine deaminase 1 (At-CDA1) (EC 3.5.4.5),Cytidine deaminase 2 (EC 3.5.4.5),Cytidine deaminase 8 (EC 3.5.4.5),Cytidine/deoxycytidylate deaminase family protein cytosol [GO:0005829]; cytidine deaminase activity [GO:0004126]; zinc ion binding [GO:0008270]; cytidine deamination [GO:0009972],cytosol [GO:0005829]; cytidine deaminase activity [GO:0004126]; deoxycytidine deaminase activity [GO:0047844]; protein homodimerization activity [GO:0042803]; zinc ion binding [GO:0008270]; cytidine catabolic process [GO:0006216]; cytidine deamination [GO:0009972],cytidine deaminase activity [GO:0004126]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems and flowers. {ECO:0000269|PubMed:10469156}. locus:2134403;,locus:2134358;,locus:2134418;,locus:2134388;,locus:2134338;,locus:2050429;,locus:2134373;,locus:2134413;,locus:2134428; AT4G29640,AT4G29580,AT4G29610,AT4G29650,AT4G29630,AT4G29600,AT2G19570,AT4G29620,AT4G29570 cytidine deaminase Cytidine/deoxycytidine deaminase-like (Os01g0712700 protein) (cDNA, clone: J100085E05, full insert sequence),Os06g0611600 protein (Fragment) Q8S0I1,A0A0P0WYM0 Q8S0I1_ORYSJ,A0A0P0WYM0_ORYSJ Os01g0712700 B1142C05.20 OSNPB_010712700,Os06g0611600 OSNPB_060611600 ENOG411DWTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os01g0574800 protein Q8LQJ5 Q8LQJ5_ORYSJ Os01g0574800 Os01g0574800 B1151A10.31 OSNPB_010574800 ENOG411DWTU CEL2,GH9B13 Q9SRX3,O81416,A0A1P8B606 GUN1_ARATH,GUN17_ARATH,A0A1P8B606_ARATH Endoglucanase 1 (EC 3.2.1.4) (Cellulase 2) (AtCEL2) (Endo-1,4-beta glucanase 1),Endoglucanase 17 (EC 3.2.1.4) (Endo-1,4-beta glucanase 17),Endoglucanase (EC 3.2.1.4) ARA:AT1G02800-MONOMER;,ARA:AT4G02290-MONOMER; 3.2.1.4 55419,57301,44680 Endoglucanase 1 (EC 3.2.1.4) (Cellulase 2) (AtCEL2) (Endo-1,4-beta glucanase 1),Endoglucanase 17 (EC 3.2.1.4) (Endo-1,4-beta glucanase 17),Endoglucanase (EC 3.2.1.4) extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245]; pattern specification process [GO:0007389]; response to nematode [GO:0009624],extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],cellulase activity [GO:0008810]; cellulose catabolic process [GO:0030245] DEVELOPMENTAL STAGE: Expressed in the developing septum and ovule primordia during the early stages of flower development. {ECO:0000269|PubMed:10074717}. locus:2024670;,locus:2137824; AT1G02800,AT4G02290 Endoglucanase Endoglucanase 19 (EC 3.2.1.4) (Endo-1,4-beta glucanase 19),Endoglucanase 3 (EC 3.2.1.4) (Endo-1,4-beta glucanase 3) (OsGLU8),Endoglucanase 4 (EC 3.2.1.4) (Endo-1,4-beta glucanase 4) (OsCel9F) (OsGLU14) Q6YXT7,Q8LQ92,Q6Z715 GUN19_ORYSJ,GUN3_ORYSJ,GUN4_ORYSJ Os08g0114200 LOC_Os08g02220 P0427G12.14,GLU8 Os01g0312800 LOC_Os01g21070 B1011A07.26 OsJ_01487,GLU14 Os02g0123700 LOC_Os02g03120 P0575F10.17 ENOG411DWTT DOX1 Q9SGH6 DOX1_ARATH Alpha-dioxygenase 1 (Alpha DOX1) (EC 1.14.99.-) (Fatty acid dioxygenase AlphaDOX1) (Pathogen-induced oxygenase) (Plant alpha dioxygenase 1) DISRUPTION PHENOTYPE: Slightly higher accumulation of Pseudomonas syringae pv. tomato DC3000 in infected leaves. Partially impaired systemic acquired resistance (SAR) in response to incompatible interaction. When associated with LOX1 disruption; hypersensitivity to the growth-inhibitory effect of abscisic acid (ABA) accompanied by an accumulation of ABA-inducible marker genes. {ECO:0000269|PubMed:22199234}. FUNCTION: Alpha-dioxygenase that catalyzes the primary oxygenation of fatty acids into oxylipins. Mediates a protection against oxidative stress and cell death, probably by generating some lipid-derived molecules. Promotes local and systemic plant defense in a salicylic acid (SA)-dependent manner, including the establishment of systemic acquired resistance (SAR) in response to incompatible interaction. Involved in a negative regulation of abscisic acid (ABA)-mediated signaling pathway. {ECO:0000269|PubMed:10455113, ECO:0000269|PubMed:12060227, ECO:0000269|PubMed:22199234}. ARA:AT3G01420-MONOMER;MetaCyc:AT3G01420-MONOMER; 1.14.99.- 73158 Alpha-dioxygenase 1 (Alpha DOX1) (EC 1.14.99.-) (Fatty acid dioxygenase AlphaDOX1) (Pathogen-induced oxygenase) (Plant alpha dioxygenase 1) monolayer-surrounded lipid storage body [GO:0012511]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702]; peroxidase activity [GO:0004601]; (R)-2-hydroxy-alpha-linolenic acid biosynthetic process [GO:1902609]; cell death [GO:0008219]; cellular response to nitric oxide [GO:0071732]; cellular response to reactive oxygen species [GO:0034614]; cellular response to salicylic acid stimulus [GO:0071446]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; fatty acid alpha-oxidation [GO:0001561]; lipid metabolic process [GO:0006629]; oxylipin biosynthetic process [GO:0031408]; plant-type hypersensitive response [GO:0009626]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979]; response to salicylic acid [GO:0009751]; systemic acquired resistance [GO:0009627] TISSUE SPECIFICITY: Expressed in roots (epiderm), mature flowers (e.g. anthers) and senescing leaves. {ECO:0000269|PubMed:12060227, ECO:0000269|PubMed:17369372}. locus:2096697; AT3G01420 alpha-dioxygenase Alpha-dioxygenase, putative, expressed (Os12g0448900 protein) Q2QRV3 Q2QRV3_ORYSJ Os12g0448900 LOC_Os12g26290 Os12g0448900 OsJ_35967 OSNPB_120448900 ENOG411DWTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain Os04g0423100 protein A0A0P0WAA7 A0A0P0WAA7_ORYSJ Os04g0423100 OSNPB_040423100 ENOG411DWTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carboxylesterase activity NA NA NA NA NA NA NA ENOG411DWTX SIGA O24629 SIGA_ARATH RNA polymerase sigma factor sigA (Sigma factor A) (Sigma-A) (RNA polymerase sigma factor sig1) (Atsig1) (Sigma factor 1) (RNA polymerase sigma factor sig2) (Atsig2) (Sigma factor 2) (RNA polymerase sigma factor sigB) (Sigma factor B) (Sigma-B) DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:20040062}. FUNCTION: Essential protein. Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. Controls the transcription of the psaA gene and thus modulates photosystem stoichiometry. Thereby maintains a harmonious electron flow and photosynthetic efficiency. {ECO:0000269|PubMed:10734058, ECO:0000269|PubMed:12602869}. 56400 RNA polymerase sigma factor sigA (Sigma factor A) (Sigma-A) (RNA polymerase sigma factor sig1) (Atsig1) (Sigma factor 1) (RNA polymerase sigma factor sig2) (Atsig2) (Sigma factor 2) (RNA polymerase sigma factor sigB) (Sigma factor B) (Sigma-B) chloroplast [GO:0009507]; DNA binding [GO:0003677]; plastid sigma factor activity [GO:0001053]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to light stimulus [GO:0071482]; cellular response to redox state [GO:0071461]; DNA-templated transcription, initiation [GO:0006352]; photosystem stoichiometry adjustment [GO:0080005]; regulation of RNA biosynthetic process [GO:2001141]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Highly expressed in leaves, and to a lesser extent in roots. Expressed in old seedlings (8 days), cotyledons, hypocotyls, leaves, sepals and siliques. {ECO:0000269|PubMed:10555304, ECO:0000269|PubMed:10946105, ECO:0000269|PubMed:15807777, ECO:0000269|PubMed:9405719}. locus:2010871; AT1G64860 RNA polymerase sigma factor Os08g0163400 protein (Putative plastid RNA polymerase sigma factor),Os08g0163400 protein (Fragment) Q7EY07,A0A0P0XCX8 Q7EY07_ORYSJ,A0A0P0XCX8_ORYSJ OJ9990_A01.116-2 Os08g0163400 OSNPB_080163400,Os08g0163400 OSNPB_080163400 ENOG411DWT3 ABA3 Q9C5X8,A0A1P8AVG9,A0A1P8AVE2 MOCOS_ARATH,A0A1P8AVG9_ARATH,A0A1P8AVE2_ARATH Molybdenum cofactor sulfurase (MCS) (MOS) (MoCo sulfurase) (EC 2.8.1.9) (Abscisic acid protein 3) (Low expression of osmotically expressive genes protein 5) (Molybdenum cofactor sulfurtransferase),Molybdenum cofactor sulfurase (MCS) (MOS) (MoCo sulfurase) (EC 2.8.1.9) (Molybdenum cofactor sulfurtransferase) In control experiments multiplication of the bacterial cor mutant (in Col and Ler) at the surface of leaves was greatly reduced compared whereas it multiplied efficiently when infiltrated directly into the apoplast (and caused typical disease symptoms incluring necrosis and chlorosis). In the surface-inoculated mutant the bacterial cor mutant multiplied efficiently.,Stomata of the mutant are greatly compromised in their ability to respond to either Pst DC3000 or Pst DC300/avrRpt2 suggesting that ABA biosynthesis is required for stomatal closure in response to these bacteria.,Stomatal closure could not be induced by the bacterial PAMP (pathogen-associated molecular pattern) molecules flg2 (a biologically active peptide derived from flagellin) or LPS (lipopolysaccharide).,abscisic acid deficient reduced level of endogenous ABA during various stages of plant and seed development but relatively higher ABA content than other aba mutants; impaired in ABA biosynthesis blocking the conversion of ABA-aldehyde to ABA; increased leaf transpiration rate but relatively low rate of water loss than other aba mutants which leads to a slightly wilty phenotype especially under low relative humidity and water stress; wilty phenotype can be restored to normal by spraying an ABA solution to the plants; reduced seed dormancy fresh seeds germinate at high frequency germinate in silique on plant at high relative humidity; decreased sensitivity to the presence of GA biosynthesis inhibitors such as paclobutrazol; reduced sensitivity to salt and osmotic stress during germination.,Double mutants were indistinguishable from bps1 single mutants.,Defective chloroplast import. Does not survive if grown on MS media without sucrose. In soil aci2-1 had a small stature with dark green pigmentation. Rosette size was half that of the parent line. Leaves were reduced in length and width serrated and fewer in number.Leaf protoplasts from had significantly more chloroplasts per cell than the parental line. aci2-1 also accumulated lipid droplets and large starch grains. Chloroplasts appeared smaller in aci2-1 than in the parental line. Reduced seed dormancy; Wilty; Low ABA levels; Altered response to low temperature and osmotic stress-M. Koornneef-1996 FUNCTION: Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Modulates cold stress- and osmotic stress-responsive gene expression by acting as key regulator of abscisic acid (ABA) biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03050, ECO:0000269|PubMed:11549764, ECO:0000269|PubMed:11553608, ECO:0000269|PubMed:14726515, ECO:0000269|PubMed:15561708, ECO:0000269|PubMed:18258600}.,FUNCTION: Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. {ECO:0000256|HAMAP-Rule:MF_03050}. R-ATH-947581; 2.8.1.9; 2.8.1.9 91803,94360,80917 Molybdenum cofactor sulfurase (MCS) (MOS) (MoCo sulfurase) (EC 2.8.1.9) (Abscisic acid protein 3) (Low expression of osmotically expressive genes protein 5) (Molybdenum cofactor sulfurtransferase),Molybdenum cofactor sulfurase (MCS) (MOS) (MoCo sulfurase) (EC 2.8.1.9) (Molybdenum cofactor sulfurtransferase) intracellular [GO:0005622]; Mo-molybdopterin cofactor sulfurase activity [GO:0008265]; molybdenum cofactor sulfurtransferase activity [GO:0102867]; molybdenum ion binding [GO:0030151]; pyridoxal phosphate binding [GO:0030170]; selenocysteine lyase activity [GO:0009000]; abscisic acid biosynthetic process [GO:0009688]; auxin-activated signaling pathway [GO:0009734]; defense response to bacterium [GO:0042742]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; molybdenum incorporation into molybdenum-molybdopterin complex [GO:0018315]; protein import into chloroplast stroma [GO:0045037]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; stomatal movement [GO:0010118]; sugar mediated signaling pathway [GO:0010182],lyase activity [GO:0016829]; Mo-molybdopterin cofactor sulfurase activity [GO:0008265]; molybdenum cofactor sulfurtransferase activity [GO:0102867]; molybdenum ion binding [GO:0030151]; pyridoxal phosphate binding [GO:0030170]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:11549764}. locus:2017943; AT1G16540 Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form Molybdenum cofactor sulfurase (MCS) (MOS) (MoCo sulfurase) (EC 2.8.1.9) (Molybdenum cofactor sulfurase-like protein 3) (Molybdenum cofactor sulfurtransferase) Q655R6 MOCOS_ORYSJ MCSU3 Os06g0670000 LOC_Os06g45860 OsJ_22313 P0686E06.35 FUNCTION: Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. {ECO:0000255|HAMAP-Rule:MF_03050}. ENOG411DWT2 RHC1A O22197,Q8L729 RHC1A_ARATH,Q8L729_ARATH Probable E3 ubiquitin-protein ligase RHC1A (EC 2.3.2.27) (RING-H2 finger C1a) (RING-H2 zinc finger protein RHC1a) (RING-type E3 ubiquitin transferase RHC1A),Putative RING zinc finger protein (RING/U-box superfamily protein) FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9ZT50}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. R-ATH-983168; 2.3.2.27 36577,23166 Probable E3 ubiquitin-protein ligase RHC1A (EC 2.3.2.27) (RING-H2 finger C1a) (RING-H2 zinc finger protein RHC1a) (RING-type E3 ubiquitin transferase RHC1A),Putative RING zinc finger protein (RING/U-box superfamily protein) cell wall [GO:0005618]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2058465;,locus:1006230278; AT2G40830,AT3G10815 E3 ubiquitin-protein ligase Os03g0351800 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J023049J20, full insert sequence) Q10LG3 Q10LG3_ORYSJ Os03g0351800 LOC_Os03g22830 Os03g0351800 OsJ_10846 OSNPB_030351800 ENOG411DWT1 CLPP3 Q9SXJ6 CLPP3_ARATH ATP-dependent Clp protease proteolytic subunit 3, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP3) (nClpP3) (nClpP4) DISRUPTION PHENOTYPE: Delayed embryo development and seedling lethality. Can be rescued by adding sugars to the growth medium. FUNCTION: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). In the absence of CLPP3, modified ClpPR core(s) could be formed, albeit at strongly reduced levels (PubMed:23548781). {ECO:0000250, ECO:0000269|PubMed:23548781}. 3.4.21.92 33925 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP3) (nClpP3) (nClpP4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplastic endopeptidase Clp complex [GO:0009840]; plastid stroma [GO:0009532]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Mostly expressed in leaves. Also detected in stems, and to a lower extent, in roots (at protein level). {ECO:0000269|PubMed:11982939}. locus:2033344; AT1G66670 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Q0JMF9 Q0JMF9_ORYSJ Os01g0507900 Os01g0507900 OSNPB_010507900 ENOG411DWT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutamine amidotransferase Glutamine amidotransferase class-I family protein, expressed (Os03g0685300 protein) (Putative glutamine synthetase) Q10F14 Q10F14_ORYSJ Os03g0685300 LOC_Os03g48060 Os03g0685300 OsJ_12144 OSJNBb0072E24.2 OSNPB_030685300 ENOG411DWT7 SULTR3;4 Q9LW86 SUT34_ARATH Probable sulfate transporter 3.4 Small rosette leaves; Early flowering; Slightly elevated sulfate levels in seeds-K. Gallardo-2010 FUNCTION: H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation. {ECO:0000250}. R-ATH-174362;R-ATH-427601; 71177 Probable sulfate transporter 3.4 integral component of plasma membrane [GO:0005887]; plasmodesma [GO:0009506]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293] locus:2093452; AT3G15990 sulfate transporter Os06g0143700 protein (Putative sulfate transporter Sultr34) (SULTR-like Phosphate Distribution Transporter) Q5VQ79 Q5VQ79_ORYSJ SPDT OsSULTR3;4 Os06g0143700 OSJNBa0007O20.4 OSNPB_060143700 ENOG411DWT6 ALATS P36428,F4I4Z2 SYA_ARATH,F4I4Z2_ARATH Alanine--tRNA ligase (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at the globular stage. {ECO:0000305|PubMed:9669027}. FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. {ECO:0000255|HAMAP-Rule:MF_03133}.,FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. {ECO:0000256|HAMAP-Rule:MF_03133}. ARA:AT1G50200-MONOMER; 6.1.1.7 110489,111324 Alanine--tRNA ligase (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; alanine-tRNA ligase activity [GO:0004813]; amino acid binding [GO:0016597]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; tRNA binding [GO:0000049]; alanyl-tRNA aminoacylation [GO:0006419]; response to cadmium ion [GO:0046686]; tRNA modification [GO:0006400],mitochondrion [GO:0005739]; alanine-tRNA ligase activity [GO:0004813]; ATP binding [GO:0005524]; tRNA binding [GO:0000049]; zinc ion binding [GO:0008270]; mitochondrial alanyl-tRNA aminoacylation [GO:0070143] locus:2011962; AT1G50200 alanyl-tRNA synthetase Alanine--tRNA ligase (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) Q10A14 Q10A14_ORYSJ LOC_Os10g10244 Os10g0182000 OSNPB_100182000 FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. {ECO:0000256|HAMAP-Rule:MF_03133}. ENOG411DWT5 Q8H1F1,A0A1I9LS84 Q8H1F1_ARATH,A0A1I9LS84_ARATH AP-5 complex subunit zeta-1 (Uncharacterized protein At3g15160),AP-5 complex subunit zeta-1 62439,57597 AP-5 complex subunit zeta-1 (Uncharacterized protein At3g15160),AP-5 complex subunit zeta-1 AP-5 adaptor complex [GO:0044599] locus:2083646; AT3G15160 Inherit from euNOG: adaptor-related protein complex 5 zeta 1 subunit Os04g0626900 protein A0A0P0WF83 A0A0P0WF83_ORYSJ Os04g0626900 OSNPB_040626900 ENOG411DWT4 ABCB6,ABCB20 Q8LPT1,Q9M3B9,A0A1P8AZ84 AB6B_ARATH,AB20B_ARATH,A0A1P8AZ84_ARATH ABC transporter B family member 6 (ABC transporter ABCB.6) (AtABCB6) (Multidrug resistance protein 6) (P-glycoprotein 6),ABC transporter B family member 20 (ABC transporter ABCB.20) (AtABCB20) (Multidrug resistance protein 14) (P-glycoprotein 20),p-glycoprotein 6 ARA:AT2G39480-MONOMER;,ARA:AT3G55320-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 155876,155155,136145 ABC transporter B family member 6 (ABC transporter ABCB.6) (AtABCB6) (Multidrug resistance protein 6) (P-glycoprotein 6),ABC transporter B family member 20 (ABC transporter ABCB.20) (AtABCB20) (Multidrug resistance protein 14) (P-glycoprotein 20),p-glycoprotein 6 integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2039747;,locus:2100666; AT2G39480,AT3G55320 ABC transporter B family member ABC transporter family protein, putative, expressed (Os03g0280000 protein),Os01g0976100 protein (Fragment) Q10N72,Q0JFK0 Q10N72_ORYSJ,Q0JFK0_ORYSJ Os03g0280000 LOC_Os03g17180 OSNPB_030280000,Os01g0976100 Os01g0976100 OSNPB_010976100 ENOG411DWT9 AAC1,AAC2,AAC3 P31167,P40941,O49447 ADT1_ARATH,ADT2_ARATH,ADT3_ARATH ADP,ATP carrier protein 1, mitochondrial (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1),ADP,ATP carrier protein 2, mitochondrial (ADP/ATP translocase 2) (Adenine nucleotide translocator 2) (ANT 2),ADP,ATP carrier protein 3, mitochondrial (ADP/ATP translocase 3) (Adenine nucleotide translocator 3) (ANT 3) FUNCTION: Catalyzes the exchange of ADP and ATP across the mitochondrial inner membrane.,FUNCTION: Catalyzes the exchange of ADP and ATP across the mitochondrial inner membrane. {ECO:0000250}. Parkinson's disease (05012),HTLV-I infection (05166),Huntington's disease (05016),Calcium signaling pathway (04020) 41476,41746,40718 ADP,ATP carrier protein 1, mitochondrial (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1),ADP,ATP carrier protein 2, mitochondrial (ADP/ATP translocase 2) (Adenine nucleotide translocator 2) (ANT 2),ADP,ATP carrier protein 3, mitochondrial (ADP/ATP translocase 3) (Adenine nucleotide translocator 3) (ANT 3) cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial envelope [GO:0005740]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP:ADP antiporter activity [GO:0005471]; copper ion binding [GO:0005507]; purine nucleotide transport [GO:0015865]; regulation of mitochondrial membrane permeability [GO:0046902],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial envelope [GO:0005740]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; ATP:ADP antiporter activity [GO:0005471]; copper ion binding [GO:0005507]; purine nucleotide transport [GO:0015865]; regulation of mitochondrial membrane permeability [GO:0046902],chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ATP:ADP antiporter activity [GO:0005471]; purine nucleotide transport [GO:0015865]; regulation of mitochondrial membrane permeability [GO:0046902] locus:2077778;,locus:2185041;,locus:2121363; AT3G08580,AT5G13490,AT4G28390 ADPATP carrier protein ADP,ATP carrier protein, mitochondrial (ADP/ATP translocase) (Adenine nucleotide translocator) (ANT),Os05g0302700 protein (cDNA clone:001-036-B04, full insert sequence) P31691,Q0DJC0 ADT_ORYSJ,Q0DJC0_ORYSJ Os02g0718900 LOC_Os02g48720 OJ2056_H01.33,Os05g0302700 Os05g0302700 OsJ_17966 OSNPB_050302700 FUNCTION: Catalyzes the exchange of ADP and ATP across the mitochondrial inner membrane. ENOG411DWT8 PLDALPHA2,PLDALPHA1 Q9SSQ9,Q38882 PLDA2_ARATH,PLDA1_ARATH Phospholipase D alpha 2 (AtPLDalpha2) (PLD alpha 2) (EC 3.1.4.4) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2),Phospholipase D alpha 1 (AtPLDalpha1) (PLD alpha 1) (EC 3.1.4.4) (Choline phosphatase 1) (PLDalpha) (Phosphatidylcholine-hydrolyzing phospholipase D 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but improved resistance of the seeds to deterioration during storage (PubMed:17565616). Insensitivity to abscisic acid for both promotion of stomatal closure and inhibition of stomatal opening (PubMed:16614222). Hypersensitivity to hyperosmotic stress (PubMed:19017627). Increased NaCl-induced disorganization of microtubules (PubMed:23150630). No effect on abscisic acid-induced stomatal closure (PubMed:22392280). Pldalpha1 and plddelta double mutants have a suppressed abscisic acid-induced stomatal closure (PubMed:22392280). {ECO:0000269|PubMed:16614222, ECO:0000269|PubMed:17565616, ECO:0000269|PubMed:19017627, ECO:0000269|PubMed:22392280, ECO:0000269|PubMed:23150630}. Abnormal stomatal regulation in response to ABA-X. Wang-2009 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Plays an important role in various cellular processes, including phytohormone action and response to stress, characterized by acidification of the cell. {ECO:0000250|UniProtKB:Q38882}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Plays an important role in various cellular processes, including phytohormone action and response to stress, characterized by acidification of the cell (PubMed:9437863). Involved in wound induction of jasmonic acid (PubMed:11090221). May be involved in membrane lipid remodeling (PubMed:11239826). Probably involved in freezing tolerance by modulating the cold-responsive genes and accumulation of osmolytes (PubMed:16949955). Can use phosphatidylcholine (PC), phosphatidylethanolamine (PE) and phosphatidylglycerol (PG) as substrates, both in presence or in absence of PIP2 (PubMed:9578608). Its main substrate is phosphatidylcholine (PubMed:11239826). Stimulates the intrinsic GTPase activity of GPA1 upon binding (PubMed:14594812). Mediates the abscisic acid effects on stomata through interaction with GPA1 and the production of phosphatidic acid that bind to ABI1 (PubMed:17261695, PubMed:17565616). Involved in seed aging and deterioration (PubMed:17565616). Involved in microtubule stabilization and salt tolerance (PubMed:23150630). Involved in abscisic acid-induced stomatal closure (PubMed:22392280). {ECO:0000269|PubMed:10441386, ECO:0000269|PubMed:11090221, ECO:0000269|PubMed:11239826, ECO:0000269|PubMed:14594812, ECO:0000269|PubMed:16614222, ECO:0000269|PubMed:16949955, ECO:0000269|PubMed:17261695, ECO:0000269|PubMed:17565616, ECO:0000269|PubMed:22392280, ECO:0000269|PubMed:23150630, ECO:0000269|PubMed:9437863, ECO:0000269|PubMed:9578608}. ARA:AT1G52570-MONOMER;,ARA:AT3G15730-MONOMER;MetaCyc:AT3G15730-MONOMER; 3.1.4.4; 3.1.4.4 91598,91848 Phospholipase D alpha 2 (AtPLDalpha2) (PLD alpha 2) (EC 3.1.4.4) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2),Phospholipase D alpha 1 (AtPLDalpha1) (PLD alpha 1) (EC 3.1.4.4) (Choline phosphatase 1) (PLDalpha) (Phosphatidylcholine-hydrolyzing phospholipase D 1) chloroplast envelope [GO:0009941]; clathrin-coated vesicle [GO:0030136]; membrane [GO:0016020]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; abscisic acid-activated signaling pathway [GO:0009738]; ethylene-activated signaling pathway [GO:0009873]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470],chloroplast [GO:0009507]; clathrin-coated vesicle [GO:0030136]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; GTPase activator activity [GO:0005096]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; phospholipase activity [GO:0004620]; phospholipase D activity [GO:0004630]; abscisic acid-activated signaling pathway [GO:0009738]; ethylene-activated signaling pathway [GO:0009873]; fatty acid metabolic process [GO:0006631]; leaf shaping [GO:0010358]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; seed germination [GO:0009845] TISSUE SPECIFICITY: Highly expressed in roots, stems and flowers, moderately in leaves, seedlings and siliques. Not detected in dry seeds. {ECO:0000269|PubMed:10198096}.,TISSUE SPECIFICITY: Highly expressed in roots, stems and flowers, moderately in leaves, seedlings and siliques. Not detected in seeds. {ECO:0000269|PubMed:10198096}. locus:2035211;,locus:2093227; AT1G52570,AT3G15730 Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Phospholipase D alpha 1 (PLD alpha 1) (EC 3.1.4.4) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1),Os01g0172400 protein (Fragment) Q43007,A0A0P0UZ65,A0A0P0UYT9,A0A0P0UZH3 PLDA1_ORYSJ,A0A0P0UZ65_ORYSJ,A0A0P0UYT9_ORYSJ,A0A0P0UZH3_ORYSJ PLD1 Os01g0172400 LOC_Os01g07760 OsJ_00559,Os01g0172400 OSNPB_010172400 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. ENOG411EAY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Cas1p Os01g0631100 protein (Fragment) A0A0P0V5M2 A0A0P0V5M2_ORYSJ Os01g0631100 OSNPB_010631100 ENOG411EFXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein Os03g0300700 protein (Retrotransposon protein, putative, unclassified, expressed) (cDNA clone:J023112P05, full insert sequence) Q10MP4 Q10MP4_ORYSJ LOC_Os03g18880 Os03g0300700 OsJ_10521 OSNPB_030300700 ENOG411EFX6 Q9LS13,Q9C640,F4KA31 Q9LS13_ARATH,Q9C640_ARATH,F4KA31_ARATH Transmembrane protein,Membrane protein (Uncharacterized protein F2G19.3) 17955,19387,16963 Transmembrane protein,Membrane protein (Uncharacterized protein F2G19.3) integral component of membrane [GO:0016021] locus:2144446;,locus:2825731;,locus:2144451; AT5G38080,AT1G45403,AT5G38090 NA NA NA NA NA NA NA NA ENOG411EHMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EHMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger NA NA NA NA NA NA NA ENOG411EHMH MUP24.5 Q9FF56 Q9FF56_ARATH At5g60630 (Transmembrane protein) 14705 At5g60630 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2175801; AT5G60630 NA NA NA NA NA NA NA NA ENOG411DR0Z PAE5,PAE4 Q9SR22,Q9SR23,A0A1I9LNG0 PAE5_ARATH,PAE4_ARATH,A0A1I9LNG0_ARATH Pectin acetylesterase 5 (EC 3.1.1.-),Pectin acetylesterase 4 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:25115560}. FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000250|UniProtKB:B9DFR3}.,FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. 3.1.1.- 47637,45749,34201 Pectin acetylesterase 5 (EC 3.1.1.-),Pectin acetylesterase 4 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] locus:2083569;,locus:5019474748; AT3G09410,AT3G09405 protein notum homolog Pectin acetylesterase (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) (Fragment) Q5JL22,Q69UW6,A0A0P0X974,A0A0P0WHB0 Q5JL22_ORYSJ,Q69UW6_ORYSJ,A0A0P0X974_ORYSJ,A0A0P0WHB0_ORYSJ Os01g0974500 OsJ_04952 OSNPB_010974500 P0459B04.10,P0455H11.118-1 OJ1332_C12.102-1 Os07g0634600 OsJ_25266 OSNPB_070634600,Os07g0634600 OSNPB_070634600,Os05g0111900 OSNPB_050111900 FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. ENOG411EHY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os08g0478700 protein B9G1F6 B9G1F6_ORYSJ Os08g0478700 OsJ_27682 OSNPB_080478700 ENOG411EHY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYT Q9FJ14 Q9FJ14_ARATH Uncharacterized protein 24111 Uncharacterized protein locus:2155879; AT5G49260 NA NA NA NA NA NA NA NA ENOG411EHYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0173301 protein A0A0P0VTQ7 A0A0P0VTQ7_ORYSJ Os03g0173301 OSNPB_030173301 ENOG411EHYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0898000 protein A0A0N7KE86 A0A0N7KE86_ORYSJ Os01g0898000 OSNPB_010898000 ENOG411EHYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EHYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DR0T DGAT2 Q9ASU1 DGAT2_ARATH Diacylglycerol O-acyltransferase 2 (AtDGAT2) (EC 2.3.1.20) DISRUPTION PHENOTYPE: No decrease in oil content. {ECO:0000269|PubMed:20040537}. FUNCTION: Involved in triacylglycerol (TAG) synthesis. Catalyzes the acylation of the sn-3 hydroxy group of sn-1,2-diacylglycerol using acyl-CoA (PubMed:23770095, PubMed:24663078). Can use oleoyl-CoA, linoleoyl-CoA and linolenoyl-CoA as substrates. Has substrate preference for linolenoyl-CoA or oleoyl-CoA compared to linoleoyl-CoA (PubMed:23770095). {ECO:0000269|PubMed:23770095, ECO:0000269|PubMed:24663078}. PATHWAY: Glycerolipid metabolism; triacylglycerol biosynthesis. ARA:AT3G51520-MONOMER; R-ATH-1482883;R-ATH-2142753;R-ATH-75109;R-ATH-8848584; 2.3.1.20 35854 Diacylglycerol O-acyltransferase 2 (AtDGAT2) (EC 2.3.1.20) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; diacylglycerol O-acyltransferase activity [GO:0004144]; glycerol metabolic process [GO:0006071]; lipid particle organization [GO:0034389]; neutral lipid biosynthetic process [GO:0046460]; triglyceride biosynthetic process [GO:0019432] TISSUE SPECIFICITY: Ubiquitous. Lower levels in seeds than in other tissues. Expressed in embryo and root meristematic cells (PubMed:23042274). {ECO:0000269|PubMed:20101470, ECO:0000269|PubMed:23042274}. locus:2081865; AT3G51520 diacylglycerol O-acyltransferase Os02g0714100 protein (Putative mono-or diacylglycerol acyltransferase) (cDNA clone:J023087O16, full insert sequence),Os06g0326700 protein (Putative mono-or diacylglycerol acyltransferase) Q6ZFU0,Q69PT1 Q6ZFU0_ORYSJ,Q69PT1_ORYSJ Os02g0714100 Os02g0714100 OJ1479_B12.21 OsJ_08131 OSNPB_020714100,Os06g0326700 OSJNBb0039F24.3 OSNPB_060326700 P0652D10.40 ENOG411EHYB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET NA NA NA NA NA NA NA ENOG411EHYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0374200 protein,Os02g0635950 protein Q8S5G9,Q6H876 Q8S5G9_ORYSJ,Q6H876_ORYSJ Os10g0374200 LOC_Os10g22830 Os10g0374200 OSJNBa0091J06.10 OSNPB_100374200,Os02g0635950 OJ1581_H09.4 OsJ_07646 OSNPB_020635950 ENOG411EHYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0138900 protein (Os06g0139150 protein) Q5VPF6 Q5VPF6_ORYSJ Os06g0139150 Os06g0138900 OsJ_06592 OSJNBa0041F13.19 OSJNBa0041F13.25 OSNPB_060138900 OSNPB_060139150 ENOG411EHYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DR0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os09g0512450 protein A0A0P0XQE9 A0A0P0XQE9_ORYSJ Os09g0512450 OSNPB_090512450 ENOG411EAYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bestrophin RFP-TM chloride channel NA NA NA NA NA NA NA ENOG411EAYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoporin autopeptidase Nucleoporin-like protein (Os01g0383900 protein) (cDNA clone:001-125-A12, full insert sequence) Q5VNZ1 Q5VNZ1_ORYSJ Os01g0383900 Os01g0383900 OSJNBa0091E23.44 OSJNBb0093M23.1 OSNPB_010383900 ENOG411E27P DOF3.2,DOF5.3 Q9M1E6,Q84TE9 DOF32_ARATH,DOF53_ARATH Dof zinc finger protein DOF3.2 (AtDOF3.2),Dof zinc finger protein DOF5.3 (AtDOF5.3) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 26958,28201 Dof zinc finger protein DOF3.2 (AtDOF3.2),Dof zinc finger protein DOF5.3 (AtDOF5.3) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] locus:2085697;,locus:2144030; AT3G45610,AT5G60200 zinc finger Dof-type zinc finger protein 12 (Os07g0508700 protein) (Fragment),Os07g0508900 protein (Fragment) C7DQE2,A0A0P0X6C1 C7DQE2_ORYSJ,A0A0P0X6C1_ORYSJ Os07g0508700 OSNPB_070508700,Os07g0508900 OSNPB_070508900 ENOG411E27Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3641) NA NA NA NA NA NA NA ENOG411E27R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) A0A0N7KQ88 A0A0N7KQ88_ORYSJ Os08g0545900 OSNPB_080545900 ENOG411E27S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os03g0671000 protein A0A0N7KHT2 A0A0N7KHT2_ORYSJ Os03g0671000 OSNPB_030671000 ENOG411E27T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HSPA (heat shock 70kDa) binding protein cytoplasmic cochaperone 1 HEAT repeat family protein, expressed (Os03g0271400 protein) Q10NF0 Q10NF0_ORYSJ Os03g0271400 LOC_Os03g16460 Os03g0271400 OSNPB_030271400 ENOG411E27U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0155500 protein (Fragment) A0A0P0UYG1 A0A0P0UYG1_ORYSJ Os01g0155500 OSNPB_010155500 ENOG411E27V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ankyrin repeat family protein BTB/POZ domain and ankyrin repeat-containing protein NH5.1,BTB/POZ domain and ankyrin repeat-containing protein NH5.2,Os04g0690866 protein (Os04g0690900 protein) (Fragment),Os04g0630500 protein (Fragment) Q2RAQ5,Q2QXZ2,C7J204,A0A0P0WFG7 NH51_ORYSJ,NH52_ORYSJ,C7J204_ORYSJ,A0A0P0WFG7_ORYSJ NH5.1 NH5 Os11g0141900 LOC_Os11g04600,NH5.2 NH5 Os12g0138500 LOC_Os12g04410,Os04g0690900 Os04g0690866 OSNPB_040690900,Os04g0630500 OSNPB_040630500 FUNCTION: Involved in defense response against pathogens. {ECO:0000250|UniProtKB:Q9FDY4}. ENOG411E27W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: pumilio homolog Os03g0193150 protein (Pumilio-family RNA binding repeat containing protein) Q10QK1 Q10QK1_ORYSJ Os03g0193150 LOC_Os03g09300 OSNPB_030193150 ENOG411E27X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA patatin group A-3-like NA NA NA NA NA NA NA ENOG411E27Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein Os11g0433800 protein (Transposon protein, putative, Pong sub-class, expressed) (Transposon protein, putative, ping/pong/SNOOPY sub-class),Os07g0546750 protein Q53NS7,A0A0P0X7F2 Q53NS7_ORYSJ,A0A0P0X7F2_ORYSJ LOC_Os11g24590 Os11g0433800 OSNPB_110433800,Os07g0546750 OSNPB_070546750 ENOG411E27Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os08g0194900 protein,Os11g0638700 protein,Os04g0153650 protein Q6Z945,A0A0P0Y4R2,A0A0P0W737 Q6Z945_ORYSJ,A0A0P0Y4R2_ORYSJ,A0A0P0W737_ORYSJ P0035F08.19 Os08g0194900 OSNPB_080194900,Os11g0638700 OSNPB_110638700,Os04g0153650 OSNPB_040153650 ENOG411E27A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E27B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0323100 protein (Pto kinase interactor 1 protein) (Putative Pto kinase interactor 1) (cDNA clone:J013002H11, full insert sequence) Q9AWP9 Q9AWP9_ORYSJ Os01g0323100 Os01g0323100 OsJ_01536 OSJNBa0011P19.1 OSNPB_010323100 P0426D06.44 ENOG411E27C Q9FZE2,A0A1P8ARJ3 Q9FZE2_ARATH,A0A1P8ARJ3_ARATH At1g26580 (ELM2 domain protein) (T1K7.5 protein) (Uncharacterized protein At1g26580),ELM2 domain protein 55793,48330 At1g26580 (ELM2 domain protein) (T1K7.5 protein) (Uncharacterized protein At1g26580),ELM2 domain protein locus:2197930; AT1G26580 MYB family transcription factor Os03g0425800 protein (Fragment) Q0DR18 Q0DR18_ORYSJ Os03g0425800 Os03g0425800 OSNPB_030425800 ENOG411E27D dl4420c Q9SUK6 Q9SUK6_ARATH AT4g16790/dl4420c (Glycoprotein homolog) (Hydroxyproline-rich glycoprotein family protein) 53297 AT4g16790/dl4420c (Glycoprotein homolog) (Hydroxyproline-rich glycoprotein family protein) integral component of membrane [GO:0016021] locus:2129141; AT4G16790 Inherit from euNOG: Hydroxyproline-rich glycoprotein family protein Expressed protein (Os10g0562000 protein) Q7XC52 Q7XC52_ORYSJ OSJNBb0089A17.6 LOC_Os10g41250 Os10g0562000 OSNPB_100562000 ENOG411E27E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E27F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E27G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os07g0685300 protein Q0D3I5 Q0D3I5_ORYSJ Os07g0685300 Os07g0685300 OsJ_25625 OSNPB_070685300 ENOG411E27H Q9M3B7,A0A1I9LLJ2 FBL54_ARATH,A0A1I9LLJ2_ARATH Putative F-box/LRR-repeat protein At3g49150,F-box/LRR protein 72076,14742 Putative F-box/LRR-repeat protein At3g49150,F-box/LRR protein integral component of membrane [GO:0016021]; protein insertion into membrane [GO:0051205] locus:2082861; AT3G49150 FBOX Os11g0209502 protein A0A0P0Y032 A0A0P0Y032_ORYSJ Os11g0209502 OSNPB_110209502 ENOG411E27I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain Os02g0694400 protein,Os02g0694600 protein,Os02g0694700 protein (Fragment) C7IY61,A0A0P0VNH9,A0A0P0VN75 C7IY61_ORYSJ,A0A0P0VNH9_ORYSJ,A0A0P0VN75_ORYSJ Os02g0694400 Os02g0694400 OSNPB_020694400,Os02g0694600 OSNPB_020694600,Os02g0694700 OSNPB_020694700 ENOG411E27J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Chromodomain helicase DNA binding protein Os02g0817000 protein Q6K6A1 Q6K6A1_ORYSJ Os02g0817000 Os02g0817000 OJ1136_C12.7 OSNPB_020817000 P0643F09.27 ENOG411E27K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Microtubule associated protein (MAP65/ASE1 family) Os02g0720200 protein (Putative microtubule-associated protein MAP65-1a) (cDNA clone:001-125-C02, full insert sequence) (cDNA clone:J033097J24, full insert sequence) Q6ZI13 Q6ZI13_ORYSJ Os02g0720200 Os02g0720200 OJ1008_D06.15 OSNPB_020720200 ENOG411E27M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kinesin family member NA NA NA NA NA NA NA ENOG411E27N Q6NKW7 PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280 78751 Pentatricopeptide repeat-containing protein At2g19280 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2047660; AT2G19280 repeat-containing protein NA NA NA NA NA NA NA ENOG411E270 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family Os12g0561600 protein A0A0P0YBJ5 A0A0P0YBJ5_ORYSJ Os12g0561600 OSNPB_120561600 ENOG411E271 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E272 AAE2 Q9SEY5 AAE2_ARATH Probable acyl-activating enzyme 2 (EC 6.2.1.-) (AMP-binding protein 2) (AtAMPBP2) FUNCTION: May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. {ECO:0000250}. 6.2.1.- 67462 Probable acyl-activating enzyme 2 (EC 6.2.1.-) (AMP-binding protein 2) (AtAMPBP2) ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631] TISSUE SPECIFICITY: Expressed at low levels in leaves, flowers and developing seeds. {ECO:0000269|PubMed:12805634}. locus:2057249; AT2G17650 AMP-binding enzyme NA NA NA NA NA NA NA ENOG411E273 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os03g0140700 protein) (cDNA clone:J023039B07, full insert sequence) Q10RZ6 Q10RZ6_ORYSJ Os03g0140700 LOC_Os03g04710 Os03g0140700 OsJ_09352 OSNPB_030140700 ENOG411E274 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh Calcineurin B-like protein 5 Q3HRP2 CNBL5_ORYSJ CBL5 Os01g0598200 LOC_Os01g41510 P0025A05.19 FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411E275 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E276 CYP76C5 F4HRA1 F4HRA1_ARATH Cytochrome P450, family 76, subfamily C, polypeptide 5 41598 Cytochrome P450, family 76, subfamily C, polypeptide 5 membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2012673; AT1G33730 cytochrome P450 NA NA NA NA NA NA NA ENOG411E277 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain Os08g0128900 protein A0A0P0XBI2 A0A0P0XBI2_ORYSJ Os08g0128900 OSNPB_080128900 ENOG411E278 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin Cyclin Q7XN03 Q7XN03_ORYSJ Os04g0544200 Os04g0544200 OsJ_15654 OSJNBb0038F03.8 OSNPB_040544200 ENOG411E279 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA Polymerase DNA-directed RNA polymerase subunit (EC 2.7.7.6) A0A0P0VD80 A0A0P0VD80_ORYSJ Os01g0965000 OSNPB_010965000 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU004279}. ENOG411EJ7H Q3ECI5 Q3ECI5_ARATH At1g64405 13404 At1g64405 floral organ abscission [GO:0010227] locus:505006202; AT1G64405 NA NA NA NA NA NA NA NA ENOG411EJ7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EJ7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydroxyethylthiazole kinase family NA NA NA NA NA NA NA ENOG411EJ7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated domain NA NA NA NA NA NA NA ENOG411EJ7B CLE45 Q6IWA9 CLE45_ARATH CLAVATA3/ESR (CLE)-related protein 45 [Cleaved into: CLE45p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16902140}. 14475 CLAVATA3/ESR (CLE)-related protein 45 [Cleaved into: CLE45p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed at low levels in flowers. {ECO:0000269|PubMed:16489133}. locus:4010713589; AT1G69588 clavata3 esr-related 45 NA NA NA NA NA NA NA ENOG411EJ7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0165200 protein) (cDNA clone:002-168-E05, full insert sequence) Q2QX91 Q2QX91_ORYSJ LOC_Os12g06820 Os12g0165200 OSNPB_120165200 ENOG411EJ7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Viral movement protein (MP) NA NA NA NA NA NA NA ENOG411EJ7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJ7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP-loop family NA NA NA NA NA NA NA ENOG411EJ7G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EJ7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: RanBP1 domain NA NA NA NA NA NA NA ENOG411EJ7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRC NA NA NA NA NA NA NA ENOG411EJ7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nsp1-like C-terminal region NA NA NA NA NA NA NA ENOG411EJ7Q URO Q9LTD6 Q9LTD6_ARATH At3g23140 (C2H2 and C2HC zinc fingers superfamily protein) 18801 At3g23140 (C2H2 and C2HC zinc fingers superfamily protein) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin homeostasis [GO:0010252]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355] locus:2086193; AT3G23140 Zinc finger C2H2 type family protein NA NA NA NA NA NA NA ENOG411EJ7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ7T Q1PE76 Q1PE76_ARATH Zinc finger CCCH domain protein 20102 Zinc finger CCCH domain protein locus:2130664; AT4G16460 NA NA NA NA NA NA NA NA ENOG411EJ7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BBOX Os06g0661200 protein Q651U8 Q651U8_ORYSJ OSJNBa0051O02.32 Os06g0661200 OSNPB_060661200 ENOG411EJ7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: CWC25 spliceosome-associated protein homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EJ79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EJ70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GTP binding protein 6 NA NA NA NA NA NA NA ENOG411EJ73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EJ75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DUBK AP22.47,C7A10.720 Q9FRK8,A8MQS3,O23217,F4HXG4 Q9FRK8_ARATH,A8MQS3_ARATH,O23217_ARATH,F4HXG4_ARATH Sec14p-like phosphatidylinositol transfer family protein (Uncharacterized protein At1g75170) (Uncharacterized protein F22H5.20),AT4G36640 protein (Sec14p-like phosphatidylinositol transfer family protein),At4g36640 (Sec14p-like phosphatidylinositol transfer family protein) (Uncharacterized protein AT4g36640) (Uncharacterized protein C7A10.720),Sec14p-like phosphatidylinositol transfer family protein 34343,27092,34046,24436 Sec14p-like phosphatidylinositol transfer family protein (Uncharacterized protein At1g75170) (Uncharacterized protein F22H5.20),AT4G36640 protein (Sec14p-like phosphatidylinositol transfer family protein),At4g36640 (Sec14p-like phosphatidylinositol transfer family protein) (Uncharacterized protein AT4g36640) (Uncharacterized protein C7A10.720),Sec14p-like phosphatidylinositol transfer family protein intracellular [GO:0005622]; transporter activity [GO:0005215] locus:2025202;,locus:2115320; AT1G75170,AT4G36640 SEC14 cytosolic factor family protein CRAL/TRIO domain containing protein, expressed (Os03g0724100 protein) (Putative cellular retinaldehyde-binding protein) (cDNA clone:J013149C21, full insert sequence) Q75GU9 Q75GU9_ORYSJ LOC_Os03g51430 Os03g0724100 OJ1499_D04.9 OsJ_12405 OSNPB_030724100 ENOG411DUBH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os08g0151000 protein A0A0P0XBW5 A0A0P0XBW5_ORYSJ Os08g0151000 OSNPB_080151000 ENOG411E4WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: magnesium and cobalt transport protein CorA NA NA NA NA NA NA NA ENOG411EIEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec61beta family Os12g0103300 protein (Fragment) C7JAB6 C7JAB6_ORYSJ Os12g0103300 Os12g0103300 OSNPB_120103300 ENOG411EIEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os09g0122300 protein (Fragment) A0A0P0XIZ9 A0A0P0XIZ9_ORYSJ Os09g0122300 OSNPB_090122300 ENOG411EIEB F4I1N3 F4I1N3_ARATH Transmembrane protein 16580 Transmembrane protein integral component of membrane [GO:0016021] locus:2028391; AT1G49150 NA NA NA NA NA NA NA NA ENOG411EIEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA linker histone H1 and H5 family NA NA NA NA NA NA NA ENOG411EIEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0323775 protein (Fragment) A0A0P0V1R5 A0A0P0V1R5_ORYSJ Os01g0323775 OSNPB_010323775 ENOG411EIER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0572250 protein (cDNA, clone: J043021H19, full insert sequence) B7F8A3 B7F8A3_ORYSJ Os03g0572250 OsJ_11502 OSNPB_030572250 ENOG411EIEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIEW Q9LVI1 Q9LVI1_ARATH Uncharacterized protein At3g17890 (Uncharacterized protein At3g17890/MEB5_11) 17292 Uncharacterized protein At3g17890 (Uncharacterized protein At3g17890/MEB5_11) locus:2088595; AT3G17890 NA NA NA NA NA NA NA NA ENOG411EIEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EIE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0418375 protein (Fragment),Os01g0206650 protein,Os05g0514250 protein (Fragment) A0A0P0XMA6,A0A0P0UZN6,A0A0P0WPI3 A0A0P0XMA6_ORYSJ,A0A0P0UZN6_ORYSJ,A0A0P0WPI3_ORYSJ Os09g0418375 OSNPB_090418375,Os01g0206650 OSNPB_010206650,Os05g0514250 OSNPB_050514250 ENOG411EIE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) F-box domain containing protein, expressed (Os12g0585200 protein) (Os12g0585300 protein) (cDNA clone:J023030A06, full insert sequence) Q2QMZ3 Q2QMZ3_ORYSJ Os12g0585300 LOC_Os12g39520 Os12g0585200 OsJ_36679 OSNPB_120585300 ENOG411EIE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor NA NA NA NA NA NA NA ENOG411EAT2 CYP26-1 Q9LIK6 CP26A_ARATH Peptidyl-prolyl cis-trans isomerase CYP26-1 (PPIase CYP26-1) (EC 5.2.1.8) (Cyclophilin of 26 kDa 1) (Cyclophilin-26-1) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 26045 Peptidyl-prolyl cis-trans isomerase CYP26-1 (PPIase CYP26-1) (EC 5.2.1.8) (Cyclophilin of 26 kDa 1) (Cyclophilin-26-1) integral component of membrane [GO:0016021]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2084588; AT3G22920 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) NA NA NA NA NA NA NA ENOG411EAT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EATG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os01g0148700 protein (cDNA clone:006-210-C07, full insert sequence),Expressed protein (Os12g0467200 protein) (cDNA clone:002-126-B09, full insert sequence),Os12g0466900 protein,Os04g0220501 protein Q5ZED9,Q2QRC0,Q2QRC3,A0A0P0W810 Q5ZED9_ORYSJ,Q2QRC0_ORYSJ,Q2QRC3_ORYSJ,A0A0P0W810_ORYSJ Os01g0148700 OSNPB_010148700 P0434B04.21,LOC_Os12g28090 Os12g0467200 OsJ_36045 OSNPB_120467200,Os12g0466900 LOC_Os12g28060 OSNPB_120466900,Os04g0220501 OSNPB_040220501 ENOG411EATD CALS1,CALS2,CALS4,GSL09,GSL03 Q9AUE0,Q9SL03,Q9LTG5,A0A1P8B9B7,A0A1P8AXZ6,A0A1P8B9D3,A0A1P8B9E7,F4I8T3 CALS1_ARATH,CALS2_ARATH,CALS4_ARATH,A0A1P8B9B7_ARATH,A0A1P8AXZ6_ARATH,A0A1P8B9D3_ARATH,A0A1P8B9E7_ARATH,F4I8T3_ARATH Callose synthase 1 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 6),Callose synthase 2 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 3),Callose synthase 4 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 9),Glucan synthase-like 9,Glucan synthase-like 3,Callose synthase 1 FUNCTION: Involved in callose synthesis at the forming cell plate during cytokinesis. Not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals. {ECO:0000269|PubMed:14555698}.,FUNCTION: Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals (By similarity). {ECO:0000250}. ARA:AT1G05570-MONOMER;,ARA:AT2G31960-MONOMER;,ARA:AT5G36870-MONOMER; 2.4.1.34 225761,226019,216138,215280,221231,216010,202110,221027 Callose synthase 1 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 6),Callose synthase 2 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 3),Callose synthase 4 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 9),Glucan synthase-like 9,Glucan synthase-like 3,Callose synthase 1 1,3-beta-D-glucan synthase complex [GO:0000148]; cell plate [GO:0009504]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; regulation of cell shape [GO:0008360],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; regulation of cell shape [GO:0008360],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; regulation of cell shape [GO:0008360],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075] locus:2031938;,locus:2045452;,locus:2149089; AT1G05570,AT2G31960,AT5G36870 Vta1 like NA NA NA NA NA NA NA ENOG411EKD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLDc NA NA NA NA NA NA NA ENOG411DZG3 VPS28-1,VPS28-2 O65421,Q9S9T7 VP281_ARATH,VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 1,Vacuolar protein sorting-associated protein 28 homolog 2 FUNCTION: Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex (By similarity). {ECO:0000250}. 23494,23689 Vacuolar protein sorting-associated protein 28 homolog 1,Vacuolar protein sorting-associated protein 28 homolog 2 ESCRT I complex [GO:0000813]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; protein complex binding [GO:0032403]; protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328],ESCRT I complex [GO:0000813]; protein complex binding [GO:0032403]; protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328] locus:2119662;,locus:2138426; AT4G21560,AT4G05000 Vacuolar protein sorting-associated protein Vacuolar protein sorting-associated protein 28 homolog Q94DY4 Q94DY4_ORYSJ Os01g0781000 Os01g0781000 B1100D10.6 OsJ_03679 OSNPB_010781000 P0010B10.36 FUNCTION: Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. {ECO:0000256|PIRNR:PIRNR017535}. ENOG411EKKT MNB8.11 B9DG68,Q9LVU7,F4KIZ7,A0A1P8BFS2,A0A1P8BFL3 B9DG68_ARATH,Q9LVU7_ARATH,F4KIZ7_ARATH,A0A1P8BFS2_ARATH,A0A1P8BFL3_ARATH AT5G53050 protein (Alpha/beta-Hydrolases superfamily protein),Alpha/beta-Hydrolases superfamily protein 43886,48771,34342,34275,39161 AT5G53050 protein (Alpha/beta-Hydrolases superfamily protein),Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2168357; AT5G53050 hydrolase alpha beta fold family Os05g0542200 protein,Os05g0542200 protein (cDNA clone:J023112L03, full insert sequence),Os05g0542200 protein (Fragment) Q5TKP0,B7EJU0,A0A0P0WQ17 Q5TKP0_ORYSJ,B7EJU0_ORYSJ,A0A0P0WQ17_ORYSJ Os05g0542200 OJ1362_G11.17 OSNPB_050542200,Os05g0542200 OSNPB_050542200 ENOG411EKKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Epoxide hydrolase, putative, expressed (Os10g0498200 protein) (Putative epoxide hydrolase) (cDNA clone:001-022-C08, full insert sequence) (cDNA clone:006-201-H06, full insert sequence) (cDNA clone:J013134D09, full insert sequence) Q8W3F4 Q8W3F4_ORYSJ LOC_Os10g35520 Os10g0498200 OSJNBa0017E08.12 OSNPB_100498200 ENOG411EKKF ELF5 Q6QTF1,Q9LV14 Q6QTF1_ARATH,Q9LV14_ARATH EARLY FLOWERING 5 (Proline-rich family protein),AT5g62640/MRG21_6 (Proline-rich family protein) 55468,55996 EARLY FLOWERING 5 (Proline-rich family protein),AT5g62640/MRG21_6 (Proline-rich family protein) RNA processing [GO:0006396] AT5G62640 WW domain binding protein 11 NA NA NA NA NA NA NA ENOG411EKD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLDc NA NA NA NA NA NA NA ENOG411EKKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM Os04g0378200 protein (cDNA clone:J033118E02, full insert sequence) Q0JDT6 Q0JDT6_ORYSJ Os04g0378200 Os04g0378200 OsJ_14504 OSNPB_040378200 ENOG411EKKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM NA NA NA NA NA NA NA ENOG411EKKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM NA NA NA NA NA NA NA ENOG411EKKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM NA NA NA NA NA NA NA ENOG411EKKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM domain containing protein NA NA NA NA NA NA NA ENOG411EKDT TPPI,TPPH,TPPD,TPPG,TPPB,TPPE,TPPJ,TPPA,TPPC,TPPF F4KFG5,Q8GWG2,Q67XC9,Q9SUW0,Q9C9S4,Q67X99,Q5HZ05,O64896,F4I1A6,Q9SU39,A0A1P8ATL8,A0A1P8BBY7,A0A1P8BH94,A0A1P8AZ24,F4KFG6,A0A1P8B7A9,B3H457 TPPI_ARATH,TPPH_ARATH,TPPD_ARATH,TPPG_ARATH,TPPB_ARATH,TPPE_ARATH,TPPJ_ARATH,TPPA_ARATH,TPPC_ARATH,TPPF_ARATH,A0A1P8ATL8_ARATH,A0A1P8BBY7_ARATH,A0A1P8BH94_ARATH,A0A1P8AZ24_ARATH,F4KFG6_ARATH,A0A1P8B7A9_ARATH,B3H457_ARATH Probable trehalose-phosphate phosphatase I (AtTPPI) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase H (AtTPPH) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase D (AtTPPD) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase G (AtTPPG) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) (Trehalose-phosphate phosphatase 6),Trehalose-phosphate phosphatase B (AtTPPB) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase E (AtTPPE) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase J (AtTPPJ) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Trehalose-phosphate phosphatase A (AtTPPA) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase C (AtTPPC) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase F (AtTPPF) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) (Trehalose-phosphate phosphatase 5),Trehalose 6-phosphate phosphatase (EC 3.1.3.12) FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity). {ECO:0000250}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance. {ECO:0000269|PubMed:9681009}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance. {ECO:0000269|PubMed:11520870, ECO:0000269|PubMed:9681009}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity). {ECO:0000250}.; FUNCTION: Participates in the regulation of trehalose metabolism.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. {ECO:0000256|RuleBase:RU361117}. PATHWAY: Glycan biosynthesis; trehalose biosynthesis.,PATHWAY: Glycan biosynthesis; trehalose biosynthesis. {ECO:0000256|RuleBase:RU361117}. ARA:GQT-681-MONOMER; 3.1.3.12 41974,39999,41598,42634,42449,40251,41758,43192,36363,41608,40319,37575,41090,40009,40127,38040,36634 Probable trehalose-phosphate phosphatase I (AtTPPI) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase H (AtTPPH) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase D (AtTPPD) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase G (AtTPPG) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) (Trehalose-phosphate phosphatase 6),Trehalose-phosphate phosphatase B (AtTPPB) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase E (AtTPPE) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase J (AtTPPJ) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Trehalose-phosphate phosphatase A (AtTPPA) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase C (AtTPPC) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase F (AtTPPF) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) (Trehalose-phosphate phosphatase 5),Trehalose 6-phosphate phosphatase (EC 3.1.3.12) trehalose-phosphatase activity [GO:0004805]; trehalose biosynthetic process [GO:0005992],cytosol [GO:0005829]; nucleus [GO:0005634]; trehalose-phosphatase activity [GO:0004805]; trehalose biosynthetic process [GO:0005992],chloroplast [GO:0009507]; trehalase activity [GO:0015927]; trehalose-phosphatase activity [GO:0004805]; response to osmotic stress [GO:0006970]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; trehalose biosynthetic process [GO:0005992],chloroplast [GO:0009507]; trehalose-phosphatase activity [GO:0004805]; trehalose biosynthetic process [GO:0005992],nucleolus [GO:0005730]; nucleus [GO:0005634]; trehalose-phosphatase activity [GO:0004805]; response to cadmium ion [GO:0046686]; trehalose biosynthetic process [GO:0005992] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:9681009}. locus:2184063;,locus:2135272;,locus:2007651;,locus:2127510;,locus:2194704;,locus:2060390;,locus:2171850;,locus:2153082;,locus:2015051;,locus:2135540; AT5G10100,AT4G39770,AT1G35910,AT4G22590,AT1G78090,AT2G22190,AT5G65140,AT5G51460,AT1G22210,AT4G12430 Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance Probable trehalose-phosphate phosphatase 5 (OsTPP5) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase 1 (OsTPP1) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase 7 (OsTPP7) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase 2 (OsTPP2) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase 6 (OsTPP6) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Trehalose 6-phosphate phosphatase (EC 3.1.3.12),Os12g0192800 protein Q7XT34,Q75WV3,Q6H5L4,Q9FWQ2,Q6ZAL2,A0A0P0VMK5,A0A0N7KJH2,A0A0N7KTP8 TPP5_ORYSJ,TPP1_ORYSJ,TPP7_ORYSJ,TPP2_ORYSJ,TPP6_ORYSJ,A0A0P0VMK5_ORYSJ,A0A0N7KJH2_ORYSJ,A0A0N7KTP8_ORYSJ TPP5 Os04g0554000 LOC_Os04g46760 OSJNBa0010H02.18,TPP1 Os02g0661100 LOC_Os02g44230 OsJ_07820 P0516F12.9 P0708H12.35,TPP7 Os09g0369400 LOC_Os09g20390 OJ1759_F09.33 P0564H06.39,TPP2 Os10g0553300 LOC_Os10g40550 OSJNBa0015J15.3,TPP6 Os08g0409100 LOC_Os08g31630 P0042B03.17,Os02g0661100 OSNPB_020661100,Os04g0554000 OSNPB_040554000,Os12g0192800 OSNPB_120192800 FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity). {ECO:0000250}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant improves abiotic stress tolerance. {ECO:0000269|PubMed:16240171, ECO:0000269|PubMed:17257172, ECO:0000269|PubMed:18365248}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance. {ECO:0000269|PubMed:17257172}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. {ECO:0000256|RuleBase:RU361117}. MISCELLANEOUS: Over-expression of TPP1 increases trehalose levels and enhances tolerance to salt and cold stresses. {ECO:0000305|PubMed:18365248}. ENOG411DZG4 F4I0Z2 F4I0Z2_ARATH Carbohydrate-binding X8 domain superfamily protein 33991 Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:2012355; AT1G09460 X8 domain Expressed protein (Os03g0833600 protein) (cDNA clone:002-149-C11, full insert sequence) Q10B15 Q10B15_ORYSJ Os03g0833600 LOC_Os03g61780 OSNPB_030833600 ENOG411EG44 AIR1,AIR1B Q9S7I2,Q9ZSP6 AIR1_ARATH,AIR1L_ARATH Putative lipid-binding protein AIR1 (Auxin-induced in root cultures protein 1),Putative lipid-binding protein AIR1B 11624,11194 Putative lipid-binding protein AIR1 (Auxin-induced in root cultures protein 1),Putative lipid-binding protein AIR1B extracellular region [GO:0005576]; lateral root morphogenesis [GO:0010102]; response to auxin [GO:0009733],extracellular region [GO:0005576] DEVELOPMENTAL STAGE: Expressed during auxin-induced lateral root formation. {ECO:0000269|PubMed:10080694}. locus:2135600;,locus:1005716269; AT4G12550,AT4G12545 AAI NA NA NA NA NA NA NA ENOG411EG45 CLE10 Q4PSX1 CLE10_ARATH CLAVATA3/ESR (CLE)-related protein 10 [Cleaved into: CLE10p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:16902140}. 12553 CLAVATA3/ESR (CLE)-related protein 10 [Cleaved into: CLE10p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed in stems, apex, leaves, flowers, siliques and pollen. {ECO:0000269|PubMed:12602871}. locus:2007091; AT1G69320 Inherit from euNOG: clavata3 esr-related NA NA NA NA NA NA NA ENOG411EG46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EG42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EKBX WIT2 A8MQR0 WIT2_ARATH WPP domain-interacting tail-anchored protein 2 FUNCTION: Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips (PubMed:18591351). Plays a role in nuclear shape determination (PubMed:25759303). As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (PubMed:25759303). {ECO:0000269|PubMed:18591351, ECO:0000269|PubMed:25759303}. 71852 WPP domain-interacting tail-anchored protein 2 integral component of membrane [GO:0016021]; regulation of establishment or maintenance of cell polarity regulating cell shape [GO:2000769] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18591351}. locus:2205470; AT1G68910 WPP domain-interacting tail-anchored protein NA NA NA NA NA NA NA ENOG411EG4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: synthase NA NA NA NA NA NA NA ENOG411EG4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os03g0384400 protein,Os03g0384850 protein Q10KH6,A0A0P0VYY4 Q10KH6_ORYSJ,A0A0P0VYY4_ORYSJ Os03g0384400 LOC_Os03g26680 OsJ_11081 OSNPB_030384400,Os03g0384850 OSNPB_030384850 ENOG411EG4P F21O3.16 Q9SRS1 Q9SRS1_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative 5B-anther specific protein) 11232 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative 5B-anther specific protein) locus:2079686; AT3G07450 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EG4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EG4X Q84WL4 Q84WL4_ARATH At1g48325 (Expressed protein) 9466 At1g48325 (Expressed protein) locus:1006230671; AT1G48325 NA NA NA NA NA NA NA NA ENOG411EG4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EG4A PAC2 F4JJE5 PSA4B_ARATH Putative proteasome subunit alpha type-4-B (EC 3.4.25.1) (20S proteasome alpha subunit C-2) (Proteasome subunit alpha type-3) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity). {ECO:0000250}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 22731 Putative proteasome subunit alpha type-4-B (EC 3.4.25.1) (20S proteasome alpha subunit C-2) (Proteasome subunit alpha type-3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:6530298211; AT4G15165 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) NA NA NA NA NA NA NA ENOG411EG4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG4M CWLP Q9LIE9,A0A1I9LSA3,F4JJE4,F4JJE3 Q9LIE9_ARATH,A0A1I9LSA3_ARATH,F4JJE4_ARATH,F4JJE3_ARATH At3g22120 (Cell wall-plasma membrane linker protein),Cell wall-plasma membrane linker protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 34670,36732,20181,28937 At3g22120 (Cell wall-plasma membrane linker protein),Cell wall-plasma membrane linker protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein locus:2090419;,locus:2129735; AT3G22120,AT4G15160 lipid binding structural constituent of cell wall NA NA NA NA NA NA NA ENOG411EG4N SP1L4,SP1L3 Q9LF22,Q9S7P8,B3H6W7 SP1L4_ARATH,SP1L3_ARATH,B3H6W7_ARATH Protein SPIRAL1-like 4,Protein SPIRAL1-like 3,SPIRAL1-like3 Phenotype not described. FUNCTION: Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth. {ECO:0000269|PubMed:16478750}. 12821,12172,9452 Protein SPIRAL1-like 4,Protein SPIRAL1-like 3,SPIRAL1-like3 microtubule [GO:0005874],microtubule [GO:0005874]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16478750}.,TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in above-ground organs. {ECO:0000269|PubMed:16478750}. locus:2180902;,locus:2076537; AT5G15600,AT3G02180 NA NA NA NA NA NA NA NA ENOG411EG4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle Os01g0725500 protein,Os08g0461600 protein,Os10g0398000 protein,Os10g0417100 protein,Os12g0531500 protein,Os05g0504150 protein A0A0P0V7P0,A0A0P0XGU7,A0A0P0XTX8,A0A0P0XU90,A0A0P0YB16,A0A0P0WPE3 A0A0P0V7P0_ORYSJ,A0A0P0XGU7_ORYSJ,A0A0P0XTX8_ORYSJ,A0A0P0XU90_ORYSJ,A0A0P0YB16_ORYSJ,A0A0P0WPE3_ORYSJ Os01g0725500 OSNPB_010725500,Os08g0461600 OSNPB_080461600,Os10g0398000 OSNPB_100398000,Os10g0417100 OSNPB_100417100,Os12g0531500 OSNPB_120531500,Os05g0504150 OSNPB_050504150 ENOG411EG4I MOP10.7 Q9FFG2 Q9FFG2_ARATH RING/U-box superfamily protein (Uncharacterized protein At5g05530) (Uncharacterized protein At5g05530/MOP10_7) 23166 RING/U-box superfamily protein (Uncharacterized protein At5g05530) (Uncharacterized protein At5g05530/MOP10_7) locus:2169712; AT5G05530 RING NA NA NA NA NA NA NA ENOG411EG4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0490700 protein (cDNA clone:J023090P05, full insert sequence),Os06g0490700 protein (Fragment) Q0DC33,A0A0P0WX96 Q0DC33_ORYSJ,A0A0P0WX96_ORYSJ Os06g0490700 Os06g0490700 OSNPB_060490700,Os06g0490700 OSNPB_060490700 ENOG411EG4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411ECPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Probable glucomannan 4-beta-mannosyltransferase 5 (EC 2.4.1.32) (Cellulose synthase-like protein A5) (OsCslA5) (Glucomannan synthase) (Mannan synthase 5) Q7PC73 CSLA5_ORYSJ CSLA5 Os03g0377700 LOC_Os03g26044 OsJ_11041 OSJNBb0048D20.18 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q7PC76}. ENOG411DYKX YUP8H12R.35 A0A1P8AP79,F4IDH6,F4I4I3 A0A1P8AP79_ARATH,F4IDH6_ARATH,F4I4I3_ARATH Chaperone DnaJ-domain superfamily protein 49063,63812,62759 Chaperone DnaJ-domain superfamily protein integral component of membrane [GO:0016021] locus:2207270;,locus:2017973; AT1G79030,AT1G16680 heat- shock DNAJ heat shock N-terminal domain-containing protein, putative, expressed (Os12g0612400 protein),Os12g0612400 protein (Fragment) Q2QMA0,A0A0P0YCB9 Q2QMA0_ORYSJ,A0A0P0YCB9_ORYSJ Os12g0612400 LOC_Os12g41820 Os12g0612400 OSNPB_120612400,Os12g0612400 OSNPB_120612400 ENOG411DYKY GRXS15 Q8LBK6 GRS15_ARATH Monothiol glutaredoxin-S15, mitochondrial (AtGrxS15) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. Participates probably to the maturation of iron-sulfur proteins and to the regulation of the redox state of the BOLA proteins. {ECO:0000305}. R-ATH-1362409; 18734 Monothiol glutaredoxin-S15, mitochondrial (AtGrxS15) mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2093297; AT3G15660 Glutaredoxin Monothiol glutaredoxin-S1, mitochondrial,Monothiol glutaredoxin-S4, mitochondrial,Os01g0530400 protein (Fragment) Q0JQ97,Q0JM76,A0A0P0V3J2 GRXS1_ORYSJ,GRXS4_ORYSJ,A0A0P0V3J2_ORYSJ GRXS1 Os01g0174900 LOC_Os01g07950 OSJNBa0089K24.28,GRXS4 Os01g0530400 LOC_Os01g34620 P0702H08.16-1,Os01g0530400 OSNPB_010530400 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411DYKZ Q9FJE6 PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 101633 Putative pentatricopeptide repeat-containing protein At5g59900 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2168078; AT5G59900 Pentatricopeptide repeat-containing protein Os01g0153250 protein Q94JE2 Q94JE2_ORYSJ P0030H07.23 Os01g0153250 OSNPB_010153250 ENOG411E9FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411DYKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caspase domain ICE-like protease p20 domain containing protein, expressed (Os03g0388900 protein) (Putative metacaspase, having alternative splicing products) (cDNA, clone: J100078J12, full insert sequence) Q75LQ1 Q75LQ1_ORYSJ Os03g0388900 LOC_Os03g27120 OSJNBa0017N12.24 OSNPB_030388900 ENOG411DYKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0467100 protein (cDNA clone:J013128K07, full insert sequence) Q0JCI8 Q0JCI8_ORYSJ Os04g0467100 Os04g0467100 OSNPB_040467100 ENOG411DYKR EPSIN1 Q8VY07 EPN1_ARATH Clathrin interactor EPSIN 1 (EPSIN-related 1) DISRUPTION PHENOTYPE: Defect in vacuolar trafficking. {ECO:0000269|PubMed:16905657}. defects in vacuolar trafficking of soluble cargo proteins Abnormal vacuolar trafficking-I. Hwang-2006 FUNCTION: May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly (By similarity). Does not seem to bind to phospholipids. Plays an important role in the vacuolar trafficking of soluble cargo proteins at the trans-Golgi network. {ECO:0000250, ECO:0000269|PubMed:16905657}. R-ATH-8856825; 60634 Clathrin interactor EPSIN 1 (EPSIN-related 1) actin filament [GO:0005884]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; late endosome [GO:0005770]; thylakoid [GO:0009579]; clathrin binding [GO:0030276]; protease binding [GO:0002020]; protein targeting to vacuole [GO:0006623] TISSUE SPECIFICITY: Mostly expressed in cotyledons and flowers, and, to a lower extent, in roots, leaves and siliques (at protein level). {ECO:0000269|PubMed:16905657}. locus:2181920; AT5G11710 Clathrin interactor EPSIN OSJNBa0083N12.8 protein (Os04g0599900 protein) (cDNA clone:J033087C14, full insert sequence),Os01g0738600 protein (Putative enthoprotin),Os01g0738600 protein (Fragment),Os04g0599900 protein (Fragment) Q7XTR7,Q5JNC7,A0A0P0V7Z7,A0A0P0V7Y3,A0A0P0WEF1 Q7XTR7_ORYSJ,Q5JNC7_ORYSJ,A0A0P0V7Z7_ORYSJ,A0A0P0V7Y3_ORYSJ,A0A0P0WEF1_ORYSJ Os04g0599900 OsJ_16028 OSJNBa0083N12.8 OSNPB_040599900,Os01g0738600 Os01g0738600 OsJ_03389 OSJNBb0021A09.35 OSNPB_010738600 P0638D12.9,Os01g0738600 OSNPB_010738600,Os04g0599900 OSNPB_040599900 ENOG411DYKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDP-fucose protein O-fucosyltransferase Axi 1 protein, putative, expressed (Os03g0328100 protein) Q10M06 Q10M06_ORYSJ LOC_Os03g21090 Os03g0328100 OSNPB_030328100 ENOG411DYKT Q9LYN3,Q9SIZ3,A0A1I9LPV2 PMTM_ARATH,PMTN_ARATH,A0A1I9LPV2_ARATH Probable methyltransferase PMT22 (EC 2.1.1.-),Probable methyltransferase PMT23 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2.1.1.- 69992,66773,63078 Probable methyltransferase PMT22 (EC 2.1.1.-),Probable methyltransferase PMT23 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2078466;,locus:2063078; AT3G56080,AT2G40280 methyltransferase Os05g0472200 protein,Os01g0828300 protein (Putative early-responsive to dehydration stress protein (ERD3)) Q6ATW5,Q5QLT2,A0A0P0WNK9 Q6ATW5_ORYSJ,Q5QLT2_ORYSJ,A0A0P0WNK9_ORYSJ Os05g0472200 OSJNBa0052E20.16 OSNPB_050472200 P0015C02.11,Os01g0828300 Os01g0828300 B1088C09.16 OSNPB_010828300,Os05g0472200 OSNPB_050472200 ENOG411DYKU NUP35 O04326 NUP35_ARATH Nuclear pore complex protein NUP35 (Nucleoporin 35) 35430 Nuclear pore complex protein NUP35 (Nucleoporin 35) nuclear membrane [GO:0031965]; nuclear pore central transport channel [GO:0044613]; nuclear pore nuclear basket [GO:0044615]; nucleocytoplasmic transporter activity [GO:0005487]; phospholipid binding [GO:0005543]; single-stranded DNA binding [GO:0003697]; mRNA transport [GO:0051028]; NLS-bearing protein import into nucleus [GO:0006607]; nuclear pore organization [GO:0006999]; regulation of transcription, DNA-templated [GO:0006355] locus:2094937; AT3G16310 Pfam:MPPN Nuclear pore complex protein NUP35 (Nucleoporin 35) Q5QN03,A0A0P0WPR1 Q5QN03_ORYSJ,A0A0P0WPR1_ORYSJ Os01g0200500 B1015E06.9 OsJ_00761 OSNPB_010200500,Os05g0520100 OSNPB_050520100 ENOG411DYKV ALY3 Q6A332,A0A1I9LMF3 ALY3_ARATH,A0A1I9LMF3_ARATH Protein ALWAYS EARLY 3 (AtALY3),DNA binding protein 127569,127071 Protein ALWAYS EARLY 3 (AtALY3),DNA binding protein nucleus [GO:0005634]; transcriptional repressor complex [GO:0017053]; DNA binding [GO:0003677]; cell cycle [GO:0007049]; transcription, DNA-templated [GO:0006351],transcriptional repressor complex [GO:0017053]; DNA binding [GO:0003677]; cell cycle [GO:0007049]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}. locus:2089438; AT3G21430 Protein ALWAYS EARLY NA NA NA NA NA NA NA ENOG411DYKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M41 NA NA NA NA NA NA NA ENOG411DYKH APC4 O65418 APC4_ARATH Anaphase-promoting complex subunit 4 (Cyclosome subunit 4) FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-174184; 87420 Anaphase-promoting complex subunit 4 (Cyclosome subunit 4) anaphase-promoting complex [GO:0005680]; nucleus [GO:0005634]; anaphase-promoting complex-dependent catabolic process [GO:0031145]; cell cycle [GO:0007049]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; plant ovule development [GO:0048481]; protein ubiquitination [GO:0016567]; regulation of mitotic metaphase/anaphase transition [GO:0030071] locus:2119627; AT4G21530 anaphase-promoting complex subunit Os02g0785900 protein A0A0P0VQD8 A0A0P0VQD8_ORYSJ Os02g0785900 OSNPB_020785900 ENOG411DYKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor TFIID (or TATA-binding protein TBP) NA NA NA NA NA NA NA ENOG411DYKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os02g0126500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6Z2M7 Q6Z2M7_ORYSJ Os02g0126500 Os02g0126500 OsJ_05212 OSNPB_020126500 P0482F12.16 ENOG411DYKK Q8VYU5,A0A1P8AM27,A0A1P8AM23,F4ICC0,F4ICC1,F4ICB9 Q8VYU5_ARATH,A0A1P8AM27_ARATH,A0A1P8AM23_ARATH,F4ICC0_ARATH,F4ICC1_ARATH,F4ICB9_ARATH At1g18700/F6A14_19 (DNAJ heat shock N-terminal domain-containing protein),DNAJ heat shock N-terminal domain-containing protein 79032,79329,83788,80751,78587,79774 At1g18700/F6A14_19 (DNAJ heat shock N-terminal domain-containing protein),DNAJ heat shock N-terminal domain-containing protein integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2034985; AT1G18700 NA Os07g0632600 protein,Os07g0632600 protein (Fragment) Q7XI55,A0A0P0X9H4 Q7XI55_ORYSJ,A0A0P0X9H4_ORYSJ P0519E12.120 Os07g0632600 OSNPB_070632600,Os07g0632600 OSNPB_070632600 ENOG411DYKM Q6NMZ4 Q6NMZ4_ARATH At4g34412 (EKC/KEOPS complex subunit tprkb-like protein) 18827 At4g34412 (EKC/KEOPS complex subunit tprkb-like protein) cytosol [GO:0005829]; nucleus [GO:0005634] locus:504955557; AT4G34412 Kinase binding protein CGI-121 Os01g0142200 protein (cDNA clone:006-304-G04, full insert sequence) (cDNA clone:J033118F12, full insert sequence) Q9FU90 Q9FU90_ORYSJ Os01g0142200 OsJ_00323 OSNPB_010142200 P0019D06.12 ENOG411DYKN CCB2 Q9FJ81 CCB2_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 208) DISRUPTION PHENOTYPE: High chlorophyll fluorescence phenotype due to an impaired photosynthetic electron flow (PubMed:17971335). Seedling lethal when grown on soil. On agar plates supplied with sucrose, seedlings grow very slowly with a chlorotic phenotype. Deficiency in the accumulation of the subunits of the cytochrome b6f complex and lack of covalent heme binding to cytochrome b6 (PubMed:17971335, PubMed:18593701). {ECO:0000269|PubMed:17971335, ECO:0000269|PubMed:18593701}. FUNCTION: Required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Controls the conversion of apocytochrome b6 to holocytochrome b6. Required for covalent binding of the c-type heme to cytochrome b6. {ECO:0000269|PubMed:17971335, ECO:0000269|PubMed:18593701}. 30607 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 208) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; cytochrome b6f complex assembly [GO:0010190] locus:2173048; AT5G52110 Protein of unknown function (DUF2930) Expressed protein (Os10g0522500 protein),Expressed protein (Os10g0522500 protein) (cDNA clone:J013132P19, full insert sequence) Q109D7,Q336Z7 Q109D7_ORYSJ,Q336Z7_ORYSJ Os10g0522500 LOC_Os10g37840 OSNPB_100522500 ENOG411DYKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA stem 28 kDa Os01g0191200 protein (Putative acid phosphatase) (cDNA clone:006-301-D10, full insert sequence) (cDNA clone:006-302-C11, full insert sequence) (cDNA clone:006-302-E06, full insert sequence) (cDNA clone:006-308-C05, full insert sequence),Os05g0189900 protein (Putative acid phosphatase) (Unknow protein) (cDNA clone:006-309-B02, full insert sequence),Os05g0190500 protein (Putative acid phosphatase) (cDNA clone:006-202-C05, full insert sequence) (cDNA clone:006-202-C11, full insert sequence) (cDNA clone:006-301-B10, full insert sequence) (cDNA clone:006-303-D05, full insert sequence) (cDNA clone:006-308-E04, full insert sequence),Os05g0189300 protein (Putative acid phosphatase) (cDNA clone:001-035-A01, full insert sequence) (cDNA clone:006-304-C10, full insert sequence) (cDNA clone:006-310-A08, full insert sequence) (cDNA clone:J013099D13, full insert sequence),Os05g0190300 protein (Putative acid phosphatase) (cDNA clone:001-034-H04, full insert sequence) (cDNA clone:001-039-H02, full insert sequence) (cDNA clone:001-207-D12, full insert sequence) (cDNA clone:006-301-H06, full insert sequence) (cDNA clone:006-309-A07, full insert sequence) (cDNA clone:006-309-F05, full insert sequence) (cDNA clone:006-310-H12, full insert sequence),Os05g0190100 protein,Os05g0192100 protein (cDNA clone:006-306-A01, full insert sequence),Os05g0191700 protein,Os05g0191500 protein (Fragment) Q9LG77,Q60D99,Q60DT7,Q60DA3,Q5KQB4,B9FMV4,Q60DS2,A0A0P0WJ05,A0A0N7KKA1,A0A0P0WIV4,A0A0P0WJ51 Q9LG77_ORYSJ,Q60D99_ORYSJ,Q60DT7_ORYSJ,Q60DA3_ORYSJ,Q5KQB4_ORYSJ,B9FMV4_ORYSJ,Q60DS2_ORYSJ,A0A0P0WJ05_ORYSJ,A0A0N7KKA1_ORYSJ,A0A0P0WIV4_ORYSJ,A0A0P0WJ51_ORYSJ Os01g0191200 Os01g0191200 OSNPB_010191200 P0710E05.30,Os05g0189900 Os05g0189900 B1007D10.16 OsJ_17389 OSJNOa0076M01.2 OSNPB_050189900,Os05g0190500 Os05g0190500 B1140B01.1 OsJ_17406 OSJNOa0023G10.4 OSNPB_050190500,Os05g0189300 Os05g0189300 B1007D10.12 OSNPB_050189300,Os05g0190300 Os05g0190300 OsJ_17405 OSJNOa0023G10.1 OSJNOa0076M01.5 OSNPB_050190300,Os05g0190100 OsJ_17390 OSNPB_050190100,Os05g0192100 B1140B01.15 OSNPB_050192100,Os05g0191700 OSNPB_050191700,Os05g0191500 OSNPB_050191500 ENOG411DYKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nucleoside diphosphate kinase NA NA NA NA NA NA NA ENOG411DYKC CDC48B Q9ZPR1,A0A1P8B1Y1 CD48B_ARATH,A0A1P8B1Y1_ARATH Cell division control protein 48 homolog B (AtCDC48b),Cell division cycle 48B FUNCTION: Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity). {ECO:0000250}. 65909,46730 Cell division control protein 48 homolog B (AtCDC48b),Cell division cycle 48B cytoskeleton [GO:0005856]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein transport [GO:0015031],ATP binding [GO:0005524]; cell division [GO:0051301] locus:2044209; AT2G03670 Cell division control protein 48 homolog Os04g0498800 protein,Os05g0376200 protein Q0JC08,Q6AUP8 Q0JC08_ORYSJ,Q6AUP8_ORYSJ Os04g0498800 Os04g0498800 OsJ_15335 OSNPB_040498800,Os05g0376200 Os05g0376200 OSJNBa0007A06.6 OSNPB_050376200 ENOG411DYKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Basic leucine zipper 6 (OsbZIP06) (bZIP protein 6) Q5JMK6 BZP06_ORYSJ BZIP06 Os01g0756200 LOC_Os01g55150 OsJ_03500 P0503C12.45 FUNCTION: Transcription regulator. {ECO:0000250}. ENOG411DYKE MED6 F4IXJ7 MED6_ARATH Mediator of RNA polymerase II transcription subunit 6 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. 33411 Mediator of RNA polymerase II transcription subunit 6 core mediator complex [GO:0070847]; mediator complex [GO:0016592]; RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [GO:0001128]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123] locus:2089488; AT3G21350 Mediator of RNA polymerase II transcription subunit Os06g0217500 protein (Putative RNA polymerase transcriptional regulation mediator) Q69TG3 Q69TG3_ORYSJ Os06g0217500 Os06g0217500 OSJNBb0024N18.27 OSNPB_060217500 ENOG411DYKF ASR3 Q8VZ20 ASR3_ARATH Trihelix transcription factor ASR3 (Protein ARABIDOPSIS SH4-RELATED3) DISRUPTION PHENOTYPE: Enhanced disease resistance to virulent bacterial pathogen infection such as P. syringae pv tomato (Pst) DC3000 and P. syringae pv maculicola (Psm) ES4326 associated with immune gene activation. {ECO:0000269|PubMed:25770109}. FUNCTION: Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. 34861 Trihelix transcription factor ASR3 (Protein ARABIDOPSIS SH4-RELATED3) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to molecule of bacterial origin [GO:0071219]; defense response [GO:0006952]; negative regulation of immune response [GO:0050777]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2051174; AT2G33550 NA Os02g0516800 protein,Os04g0397500 protein (Fragment) A0A0P0VJP6,A0A0P0W9R9 A0A0P0VJP6_ORYSJ,A0A0P0W9R9_ORYSJ Os02g0516800 OSNPB_020516800,Os04g0397500 OSNPB_040397500 ENOG411DYKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Acyl transferase 8 (OsAT8) (EC 2.3.1.-) Q69UD7 AT8_ORYSJ AT8 Os06g0595800 LOC_Os06g39470 P0417D05.2 P0652A05.34 FUNCTION: Involved in the incorporation of ferulate into the cell wall. May act as arabinoxylan feruloyl transferase. {ECO:0000269|PubMed:20012086}. ENOG411DYK8 PARP3 Q9FK91 PARP3_ARATH Poly [ADP-ribose] polymerase 3 (PARP-3) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 3) (ADPRT-3) (Poly[ADP-ribose] synthase 3) FUNCTION: Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250}. ARA:AT5G22470-MONOMER; 2.4.2.30 91406 Poly [ADP-ribose] polymerase 3 (PARP-3) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 3) (ADPRT-3) (Poly[ADP-ribose] synthase 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA ligase (ATP) activity [GO:0003910]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; DNA ligation involved in DNA repair [GO:0051103]; lagging strand elongation [GO:0006273]; protein ADP-ribosylation [GO:0006471] locus:2171137; AT5G22470 poly ADP-ribose polymerase Poly [ADP-ribose] polymerase 3 (PARP-3) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 3) (ADPRT-3) (Poly[ADP-ribose] synthase 3),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) (Fragment) Q0E0Q3,A0A0P0VJU7 PARP3_ORYSJ,A0A0P0VJU7_ORYSJ PARP3 Os02g0530600 LOC_Os02g32860 OsJ_06997 P0476H10.38,Os02g0530600 OSNPB_020530600 FUNCTION: Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250}. ENOG411DYK9 REM16 Q8RYD1,A0A1P8B3A7,A0A1P8B393 REM16_ARATH,A0A1P8B3A7_ARATH,A0A1P8B393_ARATH B3 domain-containing protein REM16 (Auxin response factor 36) (Protein REPRODUCTIVE MERISTEM 16),AP2/B3-like transcriptional factor family protein 38760,32708,45616 B3 domain-containing protein REM16 (Auxin response factor 36) (Protein REPRODUCTIVE MERISTEM 16),AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; vacuole [GO:0005773]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2119166; AT4G33280 B3 domain-containing protein B3 domain-containing protein Os12g0592300,B3 domain-containing protein LOC_Os12g40090,Os12g0592300 protein Q2QMT2,Q2QMT5,A0A0P0YC10 Y1223_ORYSJ,Y1209_ORYSJ,A0A0P0YC10_ORYSJ Os12g0592300 LOC_Os12g40120 OsJ_36713,Os12g0591500 LOC_Os12g40090 OsJ_36712,Os12g0592300 OSNPB_120592300 ENOG411DYK0 FKBP19 Q9LYR5,A0A1R7T3F3,A0A1R7T3F4 FKB19_ARATH,A0A1R7T3F3_ARATH,A0A1R7T3F4_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (PPIase FKBP19) (EC 5.2.1.8) (FK506-binding protein 19) (AtFKBP19) (Immunophilin FKBP19) (Rotamase),FKBP-like peptidyl-prolyl cis-trans isomerase family protein,Peptidylprolyl isomerase (EC 5.2.1.8) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 27778,21952,23729 Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (PPIase FKBP19) (EC 5.2.1.8) (FK506-binding protein 19) (AtFKBP19) (Immunophilin FKBP19) (Rotamase),FKBP-like peptidyl-prolyl cis-trans isomerase family protein,Peptidylprolyl isomerase (EC 5.2.1.8) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077],isomerase activity [GO:0016853],peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2181660; AT5G13410 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) B7F8B9 B7F8B9_ORYSJ Os07g0133700 OsJ_22993 OSNPB_070133700 ENOG411DYK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0666400 protein (Fragment) A0A0P0V688 A0A0P0V688_ORYSJ Os01g0666400 OSNPB_010666400 ENOG411DYK2 BPC4 Q8S8C6 BPC4_ARATH Protein BASIC PENTACYSTEINE4 (AtBPC4) FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. 33307 Protein BASIC PENTACYSTEINE4 (AtBPC4) nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; regulation of developmental process [GO:0050793]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. locus:2053086; AT2G21240 transcriptional activator NA NA NA NA NA NA NA ENOG411DYK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411DYK4 MRI1.13 A0A1P8BH93,F4KC40 A0A1P8BH93_ARATH,F4KC40_ARATH Auxin canalization protein (DUF828) 37246,44869 Auxin canalization protein (DUF828) locus:2172570; AT5G57770 Pfam:DUF828 Os04g0498000 protein (Fragment) Q0JC13 Q0JC13_ORYSJ Os04g0498000 Os04g0498000 OSNPB_040498000 ENOG411DYK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region Os08g0153200 protein B9FZ43 B9FZ43_ORYSJ Os08g0153200 OsJ_26066 OSNPB_080153200 ENOG411DYK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase Os10g0560100 protein A0A0P0XXB1 A0A0P0XXB1_ORYSJ Os10g0560100 OSNPB_100560100 ENOG411DYK7 EMB2279 Q9SA76,F4I6D9 PPR64_ARATH,F4I6D9_ARATH Pentatricopeptide repeat-containing protein At1g30610, chloroplastic (Protein EMBRYO DEFECTIVE 2279),Pentatricopeptide (PPR) repeat-containing protein Embryo defective; Globular-D. Meinke-2003 FUNCTION: May play a role in embryogenesis. {ECO:0000269|PubMed:15647901}. 116095,112844 Pentatricopeptide repeat-containing protein At1g30610, chloroplastic (Protein EMBRYO DEFECTIVE 2279),Pentatricopeptide (PPR) repeat-containing protein chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451] locus:2204629; AT1G30610 Pentatricopeptide repeat-containing protein Os01g0674700 protein B9EYK3 B9EYK3_ORYSJ Os01g0674700 OsJ_02981 OSNPB_010674700 ENOG411EE3X CWINV1,CWINV5,ATBFRUCT1 Q43866,Q9LIB9,A0A1I9LRX7,A0A1I9LMZ4,F4JEJ0,A0A1I9LMZ6 INV1_ARATH,INV5_ARATH,A0A1I9LRX7_ARATH,A0A1I9LMZ4_ARATH,F4JEJ0_ARATH,A0A1I9LMZ6_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV1 (EC 3.2.1.26) (Cell wall beta-fructosidase 1) (AtbetaFRUCT1) (Cell wall invertase 1) (AtcwINV1) (Sucrose hydrolase 1),Beta-fructofuranosidase, insoluble isoenzyme CWINV5 (EC 3.2.1.26) (Cell wall beta-fructosidase 5) (Cell wall invertase 5) (AtcwINV5) (Sucrose hydrolase 5),Glycosyl hydrolases family 32 protein,Cell wall invertase 5 FUNCTION: Beta-fructofuranosidase that can use sucrose and 1-kestose, and, to a lower extent, neokestose and levan, as substrates, but not inuline. {ECO:0000269|PubMed:17873089, ECO:0000269|Ref.7}. ARA:AT3G13790-MONOMER;,ARA:AT3G13784-MONOMER; 3.2.1.26; 3.2.1.26 66280,64603,58300,58527,65954,64679 Beta-fructofuranosidase, insoluble isoenzyme CWINV1 (EC 3.2.1.26) (Cell wall beta-fructosidase 1) (AtbetaFRUCT1) (Cell wall invertase 1) (AtcwINV1) (Sucrose hydrolase 1),Beta-fructofuranosidase, insoluble isoenzyme CWINV5 (EC 3.2.1.26) (Cell wall beta-fructosidase 5) (Cell wall invertase 5) (AtcwINV5) (Sucrose hydrolase 5),Glycosyl hydrolases family 32 protein,Cell wall invertase 5 apoplast [GO:0048046]; cell wall [GO:0005618]; plasma membrane [GO:0005886]; beta-fructofuranosidase activity [GO:0004564]; sucrose alpha-glucosidase activity [GO:0004575]; carbohydrate metabolic process [GO:0005975]; response to karrikin [GO:0080167]; response to wounding [GO:0009611],apoplast [GO:0048046]; cell wall [GO:0005618]; sucrose alpha-glucosidase activity [GO:0004575]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers, and seeds. {ECO:0000269|PubMed:12508063, ECO:0000269|PubMed:16339783, ECO:0000269|PubMed:9951726}.,TISSUE SPECIFICITY: Expressed in flowers, and, to a lower extent, in leaves. {ECO:0000269|PubMed:12508063, ECO:0000269|PubMed:16339783}. locus:2091606; AT3G13790,AT3G13784 Glycosyl hydrolases family 32 C terminal NA NA NA NA NA NA NA ENOG411E6V8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC transcription factor No apical meristem protein (Os12g0415000 protein),No apical meristem protein (Os12g0418300 protein),Os12g0135850 protein,Os11g0139066 protein,Os12g0419600 protein Q2QSX2,Q2QSU1,A0A0P0Y6T1,A0A0N7KSE5,A0A0P0Y9I9 Q2QSX2_ORYSJ,Q2QSU1_ORYSJ,A0A0P0Y6T1_ORYSJ,A0A0N7KSE5_ORYSJ,A0A0P0Y9I9_ORYSJ Os12g0415000 LOC_Os12g22630 OSNPB_120415000,Os12g0418300 LOC_Os12g22940 OsJ_35881 OSNPB_120418300,Os12g0135850 OSNPB_120135850,Os11g0139066 OSNPB_110139066,Os12g0419600 OSNPB_120419600 ENOG411E6V3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein NA NA NA NA NA NA NA ENOG411E6V2 Q9SXE7 Q9SXE7_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative proline-rich cell wall protein) (T3P18.6) 29680 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative proline-rich cell wall protein) (T3P18.6) locus:2203876; AT1G62500 AAI NA NA NA NA NA NA NA ENOG411E6V0 RIC4 Q9FFD5 RIC4_ARATH CRIB domain-containing protein RIC4 (ROP-interactive CRIB motif-containing protein 4) (Target of ROP protein RIC4) DISRUPTION PHENOTYPE: Increased rate of seed germination. {ECO:0000269|PubMed:23118477}. "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Required for actin cortical microfilament assembly. Activated by ARAC4/ROP2 to promote the assembly of cortical actin microfilaments required for lobe formation and lateral expansion of pavement cells. Interaction with, and activation by ARAC4/ROP2 is inhibited by RIC1. Functions as downstream effector of ARAC11/ROP1 to promote the assembly of apical F-actin associated with vesicle accumulation in the tip of the growing pollen tube. Counteracts the ARAC11/ROP1-RIC3 pathway, which activates calcium signaling that leads to apical F-actin disassembly associated with exocytosis, to control actin dynamics and pollen tube apical growth. Downstream of ARAC11/ROP1, is involved in the growth responses to the root-colonizing endophytic fungus P.indica. {ECO:0000269|PubMed:11752391, ECO:0000269|PubMed:15766531, ECO:0000269|PubMed:15824136, ECO:0000269|PubMed:18591430, ECO:0000269|PubMed:23118477}." MISCELLANEOUS: Over-expression of RIC4 in tobacco germinating pollen induces depolarized pollen tube growth. {ECO:0000305|PubMed:11752391}. 17013 CRIB domain-containing protein RIC4 (ROP-interactive CRIB motif-containing protein 4) (Target of ROP protein RIC4) apical plasma membrane [GO:0016324]; plasma membrane [GO:0005886]; cellulose microfibril organization [GO:0010215]; establishment of vesicle localization [GO:0051650]; multicellular organism development [GO:0007275]; pollen tube growth [GO:0009860]; regulation of actin filament polymerization [GO:0030833]; regulation of exocytosis [GO:0017157]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, siliques and pollen. {ECO:0000269|PubMed:11752391}. locus:2171332; AT5G16490 rop-interactive crib motif-containing protein 4 NA NA NA NA NA NA NA ENOG411E6V7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: F-box protein 21 NA NA NA NA NA NA NA ENOG411E6V5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E6V4 Salt-Induced and EIN3 Q9FMS4 Q9FMS4_ARATH AT5G22270 protein (AT5g22270/MWD9_5) (Gb|AAF02129.1) 9792 AT5G22270 protein (AT5g22270/MWD9_5) (Gb|AAF02129.1) locus:2176327; AT5G22270 at5g22270 (e NA NA NA NA NA NA NA ENOG411E6VQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OJ000126_13.2 protein (OSJNBa0073L04.10 protein) (Os04g0412700 protein) (cDNA clone:002-142-B08, full insert sequence) Q7X7F7 Q7X7F7_ORYSJ Os04g0412700 OJ000126_13.2 OSJNBa0073L04.10 OSNPB_040412700 ENOG411E6VP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6VV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os07g0417400 protein Q8GVI8 Q8GVI8_ORYSJ Os07g0417400 OsJ_23969 OSJNBa0066B06.126 OSNPB_070417400 ENOG411E6VU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0633900 protein) (Os12g0634000 protein) (cDNA clone:002-129-E07, full insert sequence) Q2QLP6 Q2QLP6_ORYSJ Os12g0634000 LOC_Os12g43750 Os12g0633900 OSNPB_120634000 ENOG411E6VT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6VK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SF-assemblin/beta giardin NA NA NA NA NA NA NA ENOG411E6VJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ctr copper transporter family Copper transporter 6 (OsCOPT6) Q7XTF8 COPT6_ORYSJ COPT6 Os04g0415600 LOC_Os04g33900 OJ991214_12.9 FUNCTION: Involved in the transport of copper. {ECO:0000250}. ENOG411E6VI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced NA NA NA NA NA NA NA ENOG411E6VH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0536500 protein (cDNA clone:J033022H17, full insert sequence) Q6EU57 Q6EU57_ORYSJ Os02g0536500 Os02g0536500 OJ1112_G07.32 OSNPB_020536500 ENOG411E6VN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411E6VM Q8GYH4 Q8GYH4_ARATH F-box family protein-like protein (Uncharacterized protein At3g20620) (Uncharacterized protein At3g20620/K10D20_15) 44386 F-box family protein-like protein (Uncharacterized protein At3g20620) (Uncharacterized protein At3g20620/K10D20_15) ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2085745; AT3G20620 Inherit from euNOG: f-box family NA NA NA NA NA NA NA ENOG411E6VC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0111700 protein,Os11g0112100 protein A0A0P0Y665,A0A0P0XYD4 A0A0P0Y665_ORYSJ,A0A0P0XYD4_ORYSJ Os12g0111700 OSNPB_120111700,Os11g0112100 OSNPB_110112100 ENOG411E6VB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) Os02g0750800 protein Q6Z8K2 Q6Z8K2_ORYSJ P0431B06.19 Os02g0750800 OSNPB_020750800 ENOG411E6VA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0474500 protein (cDNA clone:002-176-E09, full insert sequence) Q6ZDH0 Q6ZDH0_ORYSJ Os08g0474500 Os08g0474500 OSNPB_080474500 P0451G12.14 ENOG411E6VG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) Os01g0201400 protein (cDNA clone:J023049L07, full insert sequence) Q9AWJ6 Q9AWJ6_ORYSJ Os01g0201400 B1015E06.29 OSNPB_010201400 P0489A05.1 ENOG411E6VF Q8LEL5 Q8LEL5_ARATH At4g18400 12104 At4g18400 locus:2124553; AT4G18400 NA Os09g0569450 protein,Os02g0165300 protein B9G569,B9F375 B9G569_ORYSJ,B9F375_ORYSJ Os09g0569450 OsJ_30410 OSNPB_090569450,Os02g0165300 OsJ_05510 OSNPB_020165300 ENOG411E6VE Q9SVJ5 Q9SVJ5_ARATH Uncharacterized protein AT4g38980 (Uncharacterized protein F19H22.80) 30709 Uncharacterized protein AT4g38980 (Uncharacterized protein F19H22.80) locus:2120202; AT4G38980 NA NA NA NA NA NA NA NA ENOG411E6VD SMR6 Q29Q81 SMR6_ARATH Cyclin-dependent protein kinase inhibitor SMR6 (Protein SIAMESE-RELATED 6) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle (By similarity). May inhibit CDKA-1/CYCD complexes during S-phase, preventing the re-initiation of DNA replication (PubMed:20706207). {ECO:0000250|UniProtKB:Q9LZ78, ECO:0000305|PubMed:20706207}. 12708 Cyclin-dependent protein kinase inhibitor SMR6 (Protein SIAMESE-RELATED 6) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:2155657; AT5G40460 NA NA NA NA NA NA NA NA ENOG411EK1U Q0WR59 Y5020_ARATH Probable inactive receptor kinase At5g10020 114714 Probable inactive receptor kinase At5g10020 cytosol [GO:0005829]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2184058; AT5G10020 inactive receptor kinase Os07g0626500 protein (Putative receptor-like protein kinase) (cDNA clone:J033124G23, full insert sequence),Os07g0626500 protein (Fragment) Q8LI36,A0A0N7KNW3 Q8LI36_ORYSJ,A0A0N7KNW3_ORYSJ OJ1339_F05.125 Os07g0626500 OSNPB_070626500,Os07g0626500 OSNPB_070626500 ENOG411EK1J Q9ZR09 FDL25_ARATH Putative F-box/FBD/LRR-repeat protein At4g03220 57696 Putative F-box/FBD/LRR-repeat protein At4g03220 locus:2125447; AT4G03220 FBD NA NA NA NA NA NA NA ENOG411DYN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pseudouridine-5'-monophosphatase-like Os01g0757900 protein A0A0P0V8H7 A0A0P0V8H7_ORYSJ Os01g0757900 OSNPB_010757900 ENOG411DYN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411DYN3 DIR18,DIR16 Q9T0H8,Q7Y225 DIR18_ARATH,DIR16_ARATH Dirigent protein 18 (AtDIR18),Dirigent protein 16 (AtDIR16) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 25411,25317 Dirigent protein 18 (AtDIR18),Dirigent protein 16 (AtDIR16) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2140862;,locus:2076156; AT4G13580,AT3G24020 disease resistance-responsive family protein Dirigent protein Q8H042 Q8H042_ORYSJ OJ1172F09.1 LOC_Os03g05030 Os03g0143900 OSNPB_030143900 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411DYN2 DEG15 Q8VZD4 DEG15_ARATH Glyoxysomal processing protease, glyoxysomal (AtDEG15) (EC 3.4.21.-) (DEG-protease) DISRUPTION PHENOTYPE: No visible phenotype, but loss of processing of glyoxysomal precursor proteins. Increased resistance to the herbicide precursor 4-(2,4-dichlorophenoxy) butyric acid (2,4-DB) and to the inhibitory effects of indole-3-butyric acid (IBA) on root elongation. {ECO:0000269|PubMed:17592111, ECO:0000269|PubMed:18952862, ECO:0000269|PubMed:19748917}. Immunoblot with α-gMDH antibodies showed that processing of pre-gMDH to gMDH no longer occurred in the homozygous mutant plant.,No visible phenotype. Resistant to 2,4-DB-I. Adamska-2008 FUNCTION: Trypsin-like serine endopeptidase involved in the processing of glyoxysomal higher molecular weight precursor. The dimeric form carries out the specific cleavages needed to remove PTS2-containing presequences, whereas the monomeric form degrades the removed presequences and misfolded proteins (Probable). Not required for degradation of glyoxylate cycle enzymes during seedling development. {ECO:0000269|PubMed:17592111, ECO:0000269|PubMed:18952862, ECO:0000269|PubMed:19748917, ECO:0000305}. 3.4.21.- 76126 Glyoxysomal processing protease, glyoxysomal (AtDEG15) (EC 3.4.21.-) (DEG-protease) peroxisome [GO:0005777]; endopeptidase activity [GO:0004175]; serine-type endopeptidase activity [GO:0004252]; protein processing [GO:0016485] locus:2032142; AT1G28320 protease Os12g0607400 protein,Os05g0497700 protein (Fragment) A0A0N7KUC1,A0A0P0WP69,A0A0P0WP68 A0A0N7KUC1_ORYSJ,A0A0P0WP69_ORYSJ,A0A0P0WP68_ORYSJ Os12g0607400 OSNPB_120607400,Os05g0497700 OSNPB_050497700 ENOG411DYN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B561 Os08g0101700 protein (Putative cytochrome b561) (cDNA clone:006-209-B08, full insert sequence) (cDNA clone:006-305-D02, full insert sequence) (cDNA clone:J023047K10, full insert sequence) Q6Z1Y9 Q6Z1Y9_ORYSJ Os08g0101700 B1147B12.18 OsJ_25723 OSNPB_080101700 P0015C07.1 ENOG411DYNI A0A1P8AYZ1,F4IQ29,F4IQ28 A0A1P8AYZ1_ARATH,F4IQ29_ARATH,F4IQ28_ARATH Ypt/Rab-GAP domain of gyp1p superfamily protein 100929,104595,100704 Ypt/Rab-GAP domain of gyp1p superfamily protein chloroplast [GO:0009507]; endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2049776; AT2G37290 RabGAP TBC domain-containing protein NA NA NA NA NA NA NA ENOG411DYNH F29G20.19 O23137,A0A1P8AUK8 O23137_ARATH,A0A1P8AUK8_ARATH At1g22850/F29G20_19 (SNARE associated Golgi protein family) (Uncharacterized protein F29G20.19),SNARE associated Golgi protein family 36904,32337 At1g22850/F29G20_19 (SNARE associated Golgi protein family) (Uncharacterized protein F29G20.19),SNARE associated Golgi protein family chloroplast [GO:0009507]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2017769; AT1G22850 TVP38 TMEM64 family membrane protein Os01g0884900 protein (Fragment),Os05g0100016 protein (Fragment) A0A0P0VBH1,A0A0P0WGU4 A0A0P0VBH1_ORYSJ,A0A0P0WGU4_ORYSJ Os01g0884900 OSNPB_010884900,Os05g0100016 OSNPB_050100016 ENOG411DYNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-beta hydroxysteroid dehydrogenase/isomerase family NA NA NA NA NA NA NA ENOG411DYNC KEG Q9FY48,F4K3Z6 KEG_ARATH,F4K3Z6_ARATH E3 ubiquitin-protein ligase KEG (EC 2.3.2.27) (EC 2.7.11.1) (Protein KEEP ON GOING) (RING finger protein KEG) (RING-type E3 ubiquitin transferase KEG),Protein kinasesubiquitin-protein ligase DISRUPTION PHENOTYPE: Plants are seedling lethal and are hypersensitive to glucose and abscisic acid. High accumulation of ABI5. {ECO:0000269|PubMed:17194765, ECO:0000269|PubMed:20682837}. Seedling lethal-J. Callis-2006 FUNCTION: Mediates E2-dependent protein ubiquitination. Acts as a negative regulator of abscisic acid signaling. Required for ABI5 degradation, by mediating its ubiquitination. Together with EDR1, may regulate endocytic trafficking and/or the formation of signaling complexes on trans-Golgi network (TGN)/ early endosome (EE) vesicles during stress responses. {ECO:0000269|PubMed:18815384, ECO:0000269|PubMed:20682837, ECO:0000269|PubMed:21343429}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27; 2.7.11.1 178216,178087 E3 ubiquitin-protein ligase KEG (EC 2.3.2.27) (EC 2.7.11.1) (Protein KEEP ON GOING) (RING finger protein KEG) (RING-type E3 ubiquitin transferase KEG),Protein kinasesubiquitin-protein ligase early endosome [GO:0005769]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein kinase activity [GO:0004672]; protein self-association [GO:0043621]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; developmental growth [GO:0048589]; endosomal transport [GO:0016197]; late endosome to vacuole transport [GO:0045324]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein ubiquitination [GO:0016567]; response to abscisic acid [GO:0009737]; secretion by cell [GO:0032940],ATP binding [GO:0005524]; ligase activity [GO:0016874]; protein kinase activity [GO:0004672] DEVELOPMENTAL STAGE: Expressed mainly in the actively growing and dividing cells. {ECO:0000269|PubMed:18815384}. TISSUE SPECIFICITY: Expressed in all tissues of young seedlings. In flowering plants, only detected in the youngest part of the stem, anthers and the receptacle of immature siliques. Not found in mature leave, older parts of the stem, flower parts other than anthers or mature siliques. {ECO:0000269|PubMed:18815384}. locus:2185061; AT5G13530 E3 ubiquitin-protein ligase Os05g0392050 protein A0A0P0WM13 A0A0P0WM13_ORYSJ Os05g0392050 OSNPB_050392050 ENOG411DYNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os03g0287700 protein (Fragment),Expressed protein (Os03g0826000 protein),Os03g0287600 protein Q0DSU5,Q10BA1,A0A0P0VWA4 Q0DSU5_ORYSJ,Q10BA1_ORYSJ,A0A0P0VWA4_ORYSJ Os03g0287700 Os03g0287700 OSNPB_030287700,OJ1111_B11.13 LOC_Os03g61080 Os03g0826000 OSNPB_030826000,Os03g0287600 OSNPB_030287600 ENOG411DYNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os05g0112900 protein (cDNA clone:J033045G01, full insert sequence) (cDNA clone:J033116M22, full insert sequence) Q75L17 Q75L17_ORYSJ Os05g0112900 OsJ_16872 OSJNBb0041A22.3 OSNPB_050112900 ENOG411DYNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein Os11g0293800 protein (Fragment) A0A0P0Y182 A0A0P0Y182_ORYSJ Os11g0293800 OSNPB_110293800 ENOG411DYNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Exostosin family protein, expressed (Os12g0572700 protein) Q2QNA7 Q2QNA7_ORYSJ Os12g0572700 LOC_Os12g38450 Os12g0572700 OSNPB_120572700 ENOG411DYNX Q9XI55,F4HXZ3 Q9XI55_ARATH,F4HXZ3_ARATH F9L1.8 protein (FAD/NAD(P)-binding oxidoreductase) (Uncharacterized protein At1g15140) (Uncharacterized protein At1g15140; F9L1.8),FAD/NAD(P)-binding oxidoreductase 31924,29753 F9L1.8 protein (FAD/NAD(P)-binding oxidoreductase) (Uncharacterized protein At1g15140) (Uncharacterized protein At1g15140; F9L1.8),FAD/NAD(P)-binding oxidoreductase chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; thylakoid [GO:0009579]; copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491]; response to cytokinin [GO:0009735],oxidoreductase activity [GO:0016491] locus:2037708; AT1G15140 fruit protein Os02g0328300 protein (Putative fruit protein) (cDNA clone:001-039-C06, full insert sequence) (cDNA clone:006-201-C10, full insert sequence) (cDNA clone:J013154E10, full insert sequence) Q6Z6B5 Q6Z6B5_ORYSJ Os02g0328300 Os02g0328300 OJ1521_G01.2 OSNPB_020328300 P0622F08.20 ENOG411DYNS Q9LY84 GDL76_ARATH GDSL esterase/lipase At5g14450 (EC 3.1.1.-) (Extracellular lipase At5g14450) ARA:AT5G14450-MONOMER; 3.1.1.- 43571 GDSL esterase/lipase At5g14450 (EC 3.1.1.-) (Extracellular lipase At5g14450) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2145693; AT5G14450 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411DYNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF869) Os04g0505000 protein Q0JBX4 Q0JBX4_ORYSJ Os04g0505000 Os04g0505000 OSNPB_040505000 ENOG411DZBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 Os03g0733266 protein Q6AVH8 Q6AVH8_ORYSJ OSJNBa0079G12.6 Os03g0733266 OSJNBa0027J18.25 LOC_Os03g52290 OSNPB_030733266 ENOG411EMC1 GLR3.7 Q9SDQ4 GLR37_ARATH Glutamate receptor 3.7 (Ionotropic glutamate receptor GLR5) (Ligand-gated ion channel 3.7) FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 103514 Glutamate receptor 3.7 (Ionotropic glutamate receptor GLR5) (Ligand-gated ion channel 3.7) integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230] TISSUE SPECIFICITY: Expressed predominantly in leaves and siliques. Also detected in roots. {ECO:0000269|PubMed:12082126}. locus:2062586; AT2G32400 Glutamate-gated receptor that probably acts as non- selective cation channel NA NA NA NA NA NA NA ENOG411EMCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411EMCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DoH NA NA NA NA NA NA NA ENOG411ECPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411ECPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif Os12g0604500 protein (Fragment) A0A0P0YBZ1 A0A0P0YBZ1_ORYSJ Os12g0604500 OSNPB_120604500 ENOG411ECPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECPR BHLH18,BHLH25 Q1PF17,Q9T072,A0A1P8B0Q3,A0A1P8B0N4,A0A1P8B0N9 BH018_ARATH,BH025_ARATH,A0A1P8B0Q3_ARATH,A0A1P8B0N4_ARATH,A0A1P8B0N9_ARATH Transcription factor bHLH18 (Basic helix-loop-helix protein 18) (AtbHLH18) (bHLH 18) (Transcription factor EN 28) (bHLH transcription factor bHLH018),Transcription factor bHLH25 (Basic helix-loop-helix protein 25) (AtbHLH25) (bHLH 25) (Transcription factor EN 29) (bHLH transcription factor bHLH025),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 33862,37703,37031,37159,36785 Transcription factor bHLH18 (Basic helix-loop-helix protein 18) (AtbHLH18) (bHLH 18) (Transcription factor EN 28) (bHLH transcription factor bHLH018),Transcription factor bHLH25 (Basic helix-loop-helix protein 25) (AtbHLH25) (bHLH 25) (Transcription factor EN 29) (bHLH transcription factor bHLH025),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. locus:2062225;,locus:2137574; AT2G22750,AT4G37850 basic helix-loop-helix (bHLH) family protein NA NA NA NA NA NA NA ENOG411ECPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retinal pigment epithelial membrane protein NA NA NA NA NA NA NA ENOG411ECPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os09g0567000 protein,Os11g0557400 protein (Fragment),Os09g0566400 protein (Fragment),Os04g0307433 protein Q652L9,A0A0P0Y433,A0A0P0XQZ2,A0A0N7KIT3 Q652L9_ORYSJ,A0A0P0Y433_ORYSJ,A0A0P0XQZ2_ORYSJ,A0A0N7KIT3_ORYSJ Os09g0567000 Os09g0567000 OJ1155_H10.23 OSNPB_090567000,Os11g0557400 OSNPB_110557400,Os09g0566400 OSNPB_090566400,Os04g0307433 OSNPB_040307433 ENOG411ECPI Q9FIY5,Q2V355,F4KBB7 Q9FIY5_ARATH,Q2V355_ARATH,F4KBB7_ARATH F-box associated ubiquitination effector family protein,F-box family protein 14205,26128,41173 F-box associated ubiquitination effector family protein,F-box family protein locus:2158377;,locus:1009023402; AT5G43550,AT5G22791 F-box associated domain NA NA NA NA NA NA NA ENOG411ECPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411ECPK NAC010 F4HY61 NAC10_ARATH NAC domain-containing protein 10 (ANAC010) (Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3) FUNCTION: Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. 35499 NAC domain-containing protein 10 (ANAC010) (Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. locus:2032580; AT1G28470 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411ECPF T12H20.2,T4F9.120 O82492,Q3EA58,Q9T0C3 O82492_ARATH,Q3EA58_ARATH,Q9T0C3_ARATH F-box/kelch-repeat protein (T12H20.2 protein) (Uncharacterized protein AT4g10700),CDC68-like protein,CDC68-like protein (Uncharacterized protein AT4g10660) (Uncharacterized protein T4F9.120) 29160,26960,36876 F-box/kelch-repeat protein (T12H20.2 protein) (Uncharacterized protein AT4g10700),CDC68-like protein,CDC68-like protein (Uncharacterized protein AT4g10660) (Uncharacterized protein T4F9.120) ubiquitin ligase complex [GO:0000151]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2132746;,locus:504955409;,locus:2139207; AT4G10700,AT4G10695,AT4G10660 NA NA NA NA NA NA NA NA ENOG411ECPG A0A1P8B5K7,A0A1P8B5J8,F4JGA4,F4JGA5 A0A1P8B5K7_ARATH,A0A1P8B5J8_ARATH,F4JGA4_ARATH,F4JGA5_ARATH Metallo-hydrolase/oxidoreductase superfamily protein 28711,35933,34024,33210 Metallo-hydrolase/oxidoreductase superfamily protein hydrolase activity [GO:0016787] locus:2140695; AT4G03610 Inherit from euNOG: hydrolase NA NA NA NA NA NA NA ENOG411ECPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vta1 like Os02g0247000 protein A0A0P0VH06 A0A0P0VH06_ORYSJ Os02g0247000 OSNPB_020247000 ENOG411ECPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411ECPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein NA NA NA NA NA NA NA ENOG411ECP8 O64832 O64832_ARATH Uncharacterized protein At2g23700 81325 Uncharacterized protein At2g23700 locus:2049008; AT2G23700 Protein of unknown function DUF547 NA NA NA NA NA NA NA ENOG411ECP9 IQD7 Q2NND9 Q2NND9_ARATH At1g17480 (Calmodulin binding protein IQD7) (IQ-domain 7) 41153 At1g17480 (Calmodulin binding protein IQD7) (IQ-domain 7) locus:2018837; AT1G17480 IQ-domain 7 NA NA NA NA NA NA NA ENOG411ECP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor kinase NA NA NA NA NA NA NA ENOG411ECP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ECP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 NA NA NA NA NA NA NA ENOG411ECP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase/Carboxylesterase NA NA NA NA NA NA NA ENOG411ECP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0618300 protein (Protein kinase domain containing protein, expressed) (cDNA, clone: J075163A05, full insert sequence),Expressed protein (Os11g0618600 protein),Os11g0617000 protein (Protein kinase domain containing protein, expressed),Os11g0618900 protein,Os11g0616100 protein Q2R148,Q2R145,Q2R161,A0A0P0Y4R1,A0A0N7KT79 Q2R148_ORYSJ,Q2R145_ORYSJ,Q2R161_ORYSJ,A0A0P0Y4R1_ORYSJ,A0A0N7KT79_ORYSJ Os11g0618300 LOC_Os11g40370 OsJ_34648 OSNPB_110618300,Os11g0618600 LOC_Os11g40400 OSNPB_110618600,Os11g0617000 LOC_Os11g40240 OsJ_34642 OSNPB_110617000,Os11g0618900 OSNPB_110618900,Os11g0616100 OSNPB_110616100 ENOG411ECP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLC domain NA NA NA NA NA NA NA ENOG411ECP3 Q9SHU5 ARF4_ARATH Probable ADP-ribosylation factor At2g15310 FUNCTION: GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. {ECO:0000250}. 23081 Probable ADP-ribosylation factor At2g15310 Golgi apparatus [GO:0005794]; GTP binding [GO:0005525]; protein transport [GO:0015031]; small GTPase mediated signal transduction [GO:0007264]; vesicle-mediated transport [GO:0016192] locus:2049103; AT2G15310 ADP-ribosylation factor B1A NA NA NA NA NA NA NA ENOG411EMCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411EA86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0005 Os07g0177200 protein (Putative z-protein) (cDNA clone:J023070O07, full insert sequence) Q6ZEY7 Q6ZEY7_ORYSJ OJ1361_E02.101 Os07g0177200 OSNPB_070177200 P0534H07.33 ENOG411EA88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class NA NA NA NA NA NA NA ENOG411EA8V SNZ,SMZ Q6PV67,Q6PV68,A0A1P8B311 SNZ_ARATH,SMZ_ARATH,A0A1P8B311_ARATH AP2-like ethylene-responsive transcription factor SNZ (Protein SCHNARCHZAPFEN),AP2-like ethylene-responsive transcription factor SMZ (Protein SCHLAFMUTZE),Integrase-type DNA-binding superfamily protein FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. MISCELLANEOUS: 'Schnarchzapfen' means 'snoring cone' in German.,MISCELLANEOUS: 'Schlafmuetze' means 'nightcap' in German. 36440,38672,27080 AP2-like ethylene-responsive transcription factor SNZ (Protein SCHNARCHZAPFEN),AP2-like ethylene-responsive transcription factor SMZ (Protein SCHLAFMUTZE),Integrase-type DNA-binding superfamily protein nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chloroplast organization [GO:0009658]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] locus:2056048;,locus:2082732; AT2G39250,AT3G54990 AP2 NA NA NA NA NA NA NA ENOG411EA8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle Os06g0684500 protein (cDNA clone:J023123M11, full insert sequence) Q0DA14 Q0DA14_ORYSJ Os06g0684500 Os06g0684500 OSNPB_060684500 ENOG411EA8P NPF5.9,NPF5.8 Q9SRI2,Q9LFR1 PTR31_ARATH,PTR50_ARATH Protein NRT1/ PTR FAMILY 5.9 (AtNPF5.9),Protein NRT1/ PTR FAMILY 5.8 (AtNPF5.8) R-ATH-427975;R-ATH-6798695; 62782,61732 Protein NRT1/ PTR FAMILY 5.9 (AtNPF5.9),Protein NRT1/ PTR FAMILY 5.8 (AtNPF5.8) integral component of membrane [GO:0016021]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:17481610}. locus:2100262;,locus:2147840; AT3G01350,AT5G14940 POT family NA NA NA NA NA NA NA ENOG411EA8Q Q9C9L3,F4I287 Q9C9L3_ARATH,F4I287_ARATH Putative regulator of chromosome condensation; 48393-44372 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein),Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein 112723,114143 Putative regulator of chromosome condensation; 48393-44372 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein),Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein metal ion binding [GO:0046872] locus:2205060; AT1G69710 Pfam:DZC NA NA NA NA NA NA NA ENOG411EA8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os11g0261500 protein A0A0P0Y169 A0A0P0Y169_ORYSJ Os11g0261500 OSNPB_110261500 ENOG411EA8F F26A9.8 Q9C9J1 Q9C9J1_ARATH At1g71690 (Glucuronoxylan 4-O-methyltransferase-like protein (DUF579)) (Uncharacterized protein At1g71690) (Uncharacterized protein F26A9.8) 33474 At1g71690 (Glucuronoxylan 4-O-methyltransferase-like protein (DUF579)) (Uncharacterized protein At1g71690) (Uncharacterized protein F26A9.8) integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168]; xylan biosynthetic process [GO:0045492] locus:2013066; AT1G71690 Pfam:DUF579 NA NA NA NA NA NA NA ENOG411EA8G F11M21.25 Q9ZWA4 Q9ZWA4_ARATH At1g03820 (E6-like protein) (F11M21.25 protein) (Uncharacterized protein At1g03820) 25205 At1g03820 (E6-like protein) (F11M21.25 protein) (Uncharacterized protein At1g03820) locus:2024214; AT1G03820 NA NA NA NA NA NA NA NA ENOG411EA8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PlsC NA NA NA NA NA NA NA ENOG411EA8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: synthase NA NA NA NA NA NA NA ENOG411EA8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EA8J MPK18 Q9C5C0,F4JG28 MPK18_ARATH,F4JG28_ARATH Mitogen-activated protein kinase 18 (AtMPK18) (MAP kinase 18) (EC 2.7.11.24),Protein kinase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but mutant plants show reduced sensitivity to microtubule-disrupting drugs. {ECO:0000269|PubMed:19392697}. FUNCTION: Mitogen-activated protein kinase (MAPK) that is specifically regulated by PHS1 and mediates signaling that regulates cortical microtubule functions, maybe through regulation of microtubule dynamic instability. {ECO:0000269|PubMed:19392697}. 2.7.11.24 69352,16030 Mitogen-activated protein kinase 18 (AtMPK18) (MAP kinase 18) (EC 2.7.11.24),Protein kinase superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; cortical microtubule organization [GO:0043622]; regulation of gene expression [GO:0010468],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:19392697}. locus:2024887;,locus:504955383; AT1G53510,AT4G01595 Lipopolysaccharide kinase (Kdo/WaaP) family NA NA NA NA NA NA NA ENOG411EA8K CDF1 Q8W1E3 CDF1_ARATH Cyclic dof factor 1 (Dof zinc finger protein DOF5.5) (AtDOF5.5) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:19619493, ECO:0000269|PubMed:22628657}. 33639 Cyclic dof factor 1 (Dof zinc finger protein DOF5.5) (AtDOF5.5) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chloroplast organization [GO:0009658]; flower development [GO:0009908]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the vascular tissues of cotyledons, leaves and hypocotyls and in stomata. Not detected in roots. {ECO:0000269|PubMed:16002617}. locus:2154079; AT5G62430 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EA8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oligopeptide transporter NA NA NA NA NA NA NA ENOG411EIGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGN Q8RY98 Q8RY98_ARATH Serine/Threonine-kinase RLCKVII protein (Uncharacterized protein At1g07860) 14821 Serine/Threonine-kinase RLCKVII protein (Uncharacterized protein At1g07860) integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2026499; AT1G07860 NA NA NA NA NA NA NA NA ENOG411EIGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0122800 protein,Os06g0122600 protein,Os01g0113000 protein A0A0P0WS70,A0A0N7KLF8,A0A0P0UXP1 A0A0P0WS70_ORYSJ,A0A0N7KLF8_ORYSJ,A0A0P0UXP1_ORYSJ Os06g0122800 OSNPB_060122800,Os06g0122600 OSNPB_060122600,Os01g0113000 OSNPB_010113000 ENOG411EIGH B3H5E6 B3H5E6_ARATH Uncharacterized protein 13245 Uncharacterized protein locus:4515102992; AT2G44925 NA NA NA NA NA NA NA NA ENOG411EIG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0190400 protein A0A0P0VUB9 A0A0P0VUB9_ORYSJ Os03g0190400 OSNPB_030190400 ENOG411EIG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0510750 protein) Q2QQ11 Q2QQ11_ORYSJ Os12g0510750 LOC_Os12g32610 OSNPB_120510750 ENOG411EIG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411DWAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A25 (Alpha-expansin-25) (OsEXP25) (OsEXPA25) (OsaEXPa1.6),Os03g0155500 protein (Fragment) Q4PR41,A0A0P0VT84 EXP25_ORYSJ,A0A0P0VT84_ORYSJ EXPA25 EXP25 Os03g0155500 LOC_Os03g06010 OSJNBa0011L14.17,Os03g0155500 OSNPB_030155500 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DWAB TBL7 F4I037 TBL7_ARATH Protein trichome berefringence-like 7 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 50617 Protein trichome berefringence-like 7 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2028533; AT1G48880 powdery mildew resistant protein 5 Os05g0426300 protein,Leaf senescence related protein-like (Os01g0880400 protein) (cDNA clone:J013070A21, full insert sequence),Os05g0426300 protein (Fragment) Q0DI08,Q5NA51,A0A0P0WMK3 Q0DI08_ORYSJ,Q5NA51_ORYSJ,A0A0P0WMK3_ORYSJ Os05g0426300 Os05g0426300 OSNPB_050426300,P0018C10.49-1 Os01g0880400 OsJ_04294 OSNPB_010880400,Os05g0426300 OSNPB_050426300 ENOG411DWAC FDM2,FDM1,FDM5,IDN2 F4JH53,Q9S9P3,Q9SAI1,Q8VZ79,Q9SI65,Q9LIA7,A0A1P8APP5,A0A1P8B8T3,F4J318,A0A1I9LPQ7,F4JG55 FDM2_ARATH,FDM1_ARATH,FDM5_ARATH,IDN2_ARATH,Q9SI65_ARATH,Q9LIA7_ARATH,A0A1P8APP5_ARATH,A0A1P8B8T3_ARATH,F4J318_ARATH,A0A1I9LPQ7_ARATH,F4JG55_ARATH Factor of DNA methylation 2 (Protein IDN2 PARALOG 2) (Protein IDN2-LIKE 2),Factor of DNA methylation 1 (Protein IDN2 PARALOG 1) (Protein IDN2-LIKE 1),Factor of DNA methylation 5,Protein INVOLVED IN DE NOVO 2 (Protein RNA-DIRECTED DNA METHYLATION 12),Uncharacterized protein At2g16490 (XH domain-containing protein),XH domain-containing protein,XH/XS domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. The double mutants idnl1-1 and idnl2-1 show a late-flowering phenotype and reduced level of DNA methylation (PubMed:22592791). The double mutants fdm1-1 and fdm2-1 show reduced level of DNA methylation and repeat-associated small interfering RNAs (ra-siRNAs) (PubMed:22302148). {ECO:0000269|PubMed:22302148, ECO:0000269|PubMed:22592791}.,DISRUPTION PHENOTYPE: Late flowering phenotype (PubMed:22592791) and reduction of DNA methylation at RNA-directed DNA methylation (RdDM) target loci (PubMed:19915591, PubMed:20059743, PubMed:22810086, PubMed:22570638, PubMed:22592791). {ECO:0000269|PubMed:19915591, ECO:0000269|PubMed:20059743, ECO:0000269|PubMed:22570638, ECO:0000269|PubMed:22592791, ECO:0000269|PubMed:22810086}. Late flowering; Decreased DNA methylation-S. Jacobsen-2009 FUNCTION: Forms a complex with IDN2 and FDM1/IDNL1 that is required for RNA-directed DNA methylation (RdDM) and that functions at a downstream step of the RdDM pathway. {ECO:0000269|PubMed:22302148, ECO:0000269|PubMed:22570638, ECO:0000269|PubMed:22592791}.,FUNCTION: Forms a complex with IDN2 and FDM2/IDNL2 that is required for RNA-directed DNA methylation (RdDM) and that functions at a downstream step of the RdDM pathway (PubMed:22302148, PubMed:22757778, PubMed:22570638, PubMed:22592791). Required for de novo DNA methylation and 24 nucleotide small interfering RNA (siRNA) accumulation (PubMed:22570638). Binds unmethylated but not methylated DNAs through its coiled-coil domain (PubMed:22757778). May bind double-stranded RNAs (dsRNAs) with 5'-overhangs through its XS domain (PubMed:22302148, PubMed:22757778). However, according to (PubMed:22570638), FMD1 does not bind dsRNAs. {ECO:0000269|PubMed:22302148, ECO:0000269|PubMed:22570638, ECO:0000269|PubMed:22592791, ECO:0000269|PubMed:22757778}.,FUNCTION: Acts in association with FDM3 and FDM4 for RNA-directed DNA methylation (RdDM). {ECO:0000269|PubMed:22302148}.,FUNCTION: Forms a complex with FDM1/IDNL1 and FDM2/IDNL2 that is required for RNA-directed DNA methylation (RdDM) and that functions at a downstream step of the RdDM pathway (PubMed:22570638, PubMed:22592791) and downstream of small interfering RNA (siRNA) formation (PubMed:22810086). Required for de novo DNA methylation, siRNA accumulation and siRNA-mediated maintenance methylation (PubMed:19915591). Required for several post-transcriptional gene silencing pathways (PubMed:20059743). Binds double-stranded RNAs (dsRNAs) with 5'-overhangs through its XS domain (PubMed:19915591, PubMed:20059743). Binds long non-coding RNA (lncRNA) in an AGO4-dependent manner and associates with DRM2, resulting in DNA methylation of RdDM target loci (PubMed:23246435, PubMed:24862207). Mediates the silencing of a subset of MORC6 target loci (PubMed:27171427). {ECO:0000269|PubMed:19915591, ECO:0000269|PubMed:20059743, ECO:0000269|PubMed:22570638, ECO:0000269|PubMed:22592791, ECO:0000269|PubMed:22810086, ECO:0000269|PubMed:23246435, ECO:0000269|PubMed:24862207, ECO:0000269|PubMed:27171427}. 73165,72635,74294,74824,21136,40000,54888,70235,20810,27513,54952 Factor of DNA methylation 2 (Protein IDN2 PARALOG 2) (Protein IDN2-LIKE 2),Factor of DNA methylation 1 (Protein IDN2 PARALOG 1) (Protein IDN2-LIKE 1),Factor of DNA methylation 5,Protein INVOLVED IN DE NOVO 2 (Protein RNA-DIRECTED DNA METHYLATION 12),Uncharacterized protein At2g16490 (XH domain-containing protein),XH domain-containing protein,XH/XS domain-containing protein nucleolar ribonuclease P complex [GO:0005655]; regulation of double-strand break repair via homologous recombination [GO:0010569]; RNA-directed DNA methylation [GO:0080188],nucleolar ribonuclease P complex [GO:0005655]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; double-stranded RNA binding [GO:0003725]; protein self-association [GO:0043621]; RNA binding [GO:0003723]; regulation of double-strand break repair via homologous recombination [GO:0010569]; RNA-directed DNA methylation [GO:0080188],nucleolar ribonuclease P complex [GO:0005655]; RNA-directed DNA methylation [GO:0080188],nucleolar ribonuclease P complex [GO:0005655]; RNA binding [GO:0003723]; chromatin silencing [GO:0006342]; DNA methylation [GO:0006306]; gene silencing by RNA [GO:0031047]; regulation of double-strand break repair via homologous recombination [GO:0010569]; response to cadmium ion [GO:0046686],nucleolar ribonuclease P complex [GO:0005655],gene silencing by RNA [GO:0031047],nucleolar ribonuclease P complex [GO:0005655]; gene silencing by RNA [GO:0031047] TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in roots, leaves and stems. {ECO:0000269|PubMed:22302148}. locus:2126081;,locus:2200487;,locus:2825160;,locus:2114560;,locus:2045121;,locus:505006382;,locus:2133407; AT4G00380,AT1G15910,AT1G80790,AT3G48670,AT2G16490,AT3G29375,AT4G01780 XH XS domain-containing protein Os01g0633200 protein (Putative X1) (Putative transcription factor X1) (cDNA clone:J023007G13, full insert sequence),Os02g0293300 protein (Fragment),Os01g0633200 protein (Fragment) Q9SBW2,A0A0P0VHT9,A0A0P0V5N5 Q9SBW2_ORYSJ,A0A0P0VHT9_ORYSJ,A0A0P0V5N5_ORYSJ P0663E10.10-1 Os01g0633200 OsJ_02725 OSNPB_010633200,Os02g0293300 OSNPB_020293300,Os01g0633200 OSNPB_010633200 ENOG411DWAF ANN2,ANNAT7,ANN6,ANN1,ANNAT2 Q9XEE2,Q9LX07,Q9LX08,Q9SYT0,F4KGH1 ANXD2_ARATH,ANXD7_ARATH,ANXD6_ARATH,ANXD1_ARATH,F4KGH1_ARATH Annexin D2 (AnnAt2),Annexin D7 (AnnAt7),Annexin D6 (AnnAt6),Annexin D1 (AnnAt1) (Annexin A1),Annexin DISRUPTION PHENOTYPE: Plants are hypersensitive to osmotic stress and abscisic acid (ABA) during germination and early seedling growth. {ECO:0000269|PubMed:15161963}. Sensitive to drought-J. Hennig-2009 FUNCTION: May mediate regulated, targeted secretion of Golgi-derived vesicles during seedling development.,FUNCTION: Has a peroxidase activity. May act in counteracting oxidative stress. May also mediate regulated, targeted secretion of Golgi-derived vesicles during seedling development. {ECO:0000269|PubMed:15368128, ECO:0000269|PubMed:16153598}. MISCELLANEOUS: Binds lipids at millimolar calcium concentration. ARA:AT1G35720-MONOMER; R-ATH-114608;R-ATH-6798695; 36266,36496,36570,36204,34874 Annexin D2 (AnnAt2),Annexin D7 (AnnAt7),Annexin D6 (AnnAt6),Annexin D1 (AnnAt1) (Annexin A1),Annexin apoplast [GO:0048046]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; thylakoid [GO:0009579]; calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; polysaccharide transport [GO:0015774]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to red or far red light [GO:0009639]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; copper ion binding [GO:0005507]; peroxidase activity [GO:0004601]; protein homodimerization activity [GO:0042803]; zinc ion binding [GO:0008270]; calcium ion transmembrane transport [GO:0070588]; potassium ion export [GO:0071435]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544] DEVELOPMENTAL STAGE: In germinating seedlings, expressed in root, hypocotyl and cotyledon epidermal cells. By day 4, expression expands in the root endodermis and throughout initiating lateral roots. As the seedling matures, expression in the hypocotyl and cotyledons decreases and by day 14, expression is restricted to creases between the shoot meristem and its lateral primordia. {ECO:0000269|PubMed:11457958}.,DEVELOPMENTAL STAGE: Expressed in the elongation zone of the root and in the root cap in germinating seedlings. Expressed later in the internal cells of the root and in the epidermal cells and the vascular tissue of the hypocotyl. By day 7, expressed in the initiating trichomes on leaf primordia and in the vasculature of hypocotyl and cotyledon. At the transition to reproductive growth (day 14), expressed in the vasculature, epidermis, basal mesophyll cells and pith meristem of leaves. {ECO:0000269|PubMed:11457958, ECO:0000269|PubMed:15368128}. TISSUE SPECIFICITY: Expressed mainly in roots and flowers. Low in stems and bearly detectable in leaves. {ECO:0000269|PubMed:11457958}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:11457958}.,TISSUE SPECIFICITY: Ubiquitous. Most abundant in stems. {ECO:0000269|PubMed:15368128, ECO:0000269|PubMed:8855345}. locus:2177709;,locus:2184123;,locus:2184108;,locus:2011344; AT5G65020,AT5G10230,AT5G10220,AT1G35720 Annexin Arabidopsis Annexin Q67VZ1,Q6Z6A7 Q67VZ1_ORYSJ,Q6Z6A7_ORYSJ Os06g0221200 Os06g0221200 OSNPB_060221200 P0516A04.15,Os02g0753800 Os02g0753800 OJ1288_G09.26 OsJ_08419 OSNPB_020753800 P0627E03.4 ENOG411DWAG LPAT2 Q8LG50 LPAT2_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 2) Mutation does not transmit through the female gametophyte- can only be propagated through the pollen. Egg and central cells accumulate starch and lack normal ER network. Heterozygous plants are semi-sterile with ca.50% unfertilized shriveled ovules. Female gametophyte defective; Embryo defective (inferred); Heterozygotes: Slightly shorter rosette leaves-A. Huang-2005 FUNCTION: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position. Has preference for C-18-CoA substrates compared to C-16-CoA substrates. Required for female but not male gametophyte development. {ECO:0000269|PubMed:15772283}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 2/3. ARA:AT3G57650-MONOMER; R-ATH-1483166;R-ATH-6811436; 2.3.1.51; 2.3.1.51 43676 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; 1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; CDP-diacylglycerol biosynthetic process [GO:0016024]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Present in roots, leaves, stems, floral buds and siliques (at protein level). Widely expressed. In contrast to LPAT1, it is not expressed at higher level in leaves. {ECO:0000269|PubMed:14976237, ECO:0000269|PubMed:15772283}. locus:2076676; AT3G57650 1-acyl-sn-glycerol-3-phosphate acyltransferase 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed (Os11g0637800 protein) (cDNA, clone: J090056F15, full insert sequence) Q2R0P3 Q2R0P3_ORYSJ Os11g0637800 LOC_Os11g41900 OSNPB_110637800 ENOG411DWAH AtNdr1,MYH9.10 Q93V54,F4KFD4 Q93V54_ARATH,F4KFD4_ARATH Ndr kinase (Protein kinase family protein) (Uncharacterized protein At5g09890),Protein kinase family protein 59253,59340 Ndr kinase (Protein kinase family protein) (Uncharacterized protein At5g09890),Protein kinase family protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],cytosol [GO:0005829]; intracellular [GO:0005622]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105] locus:2178208; AT5G09890 Serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DWAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA germin-like protein Putative germin-like protein 2-1,Putative germin-like protein 2-3,Putative germin-like protein 2-2 Q6K5Q0,Q6K5P8,Q6K5P9 GL21_ORYSJ,GL23_ORYSJ,GL22_ORYSJ Os02g0491600 LOC_Os02g29000 OSJNBa0048K16.34 P0579G08.10,Os02g0491800 LOC_Os02g29020 OsJ_006583 OSJNBa0048K16.37 P0579G08.13,Os02g0491700 LOC_Os02g29010 OsJ_006582 OSJNBa0048K16.35 P0579G08.11 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DWAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation_ATPase_N Plasma membrane ATPase (EC 3.6.3.6) (Fragment),Os05g0319800 protein (Fragment) Q0DJ73,A0A0P0WKS4 Q0DJ73_ORYSJ,A0A0P0WKS4_ORYSJ Os05g0319800 Os05g0319800 OSNPB_050319800,Os05g0319800 OSNPB_050319800 ENOG411DWAN GPAT9 Q8GWG0 Q8GWG0_ARATH AtGPAT9 (EC 2.3.1.15) (Glycerol-3-phosphate acyltransferase 9) (Uncharacterized protein At5g60620) (Uncharacterized protein At5g60620/mup24_30) FUNCTION: Essential protein. Required for male and female gametophytes development (PubMed:26586834). Exhibits sn-1 acyltransferase activity with high specificity for acyl-coenzyme A, thus triggering storage lipid biosynthesis and playing an important role in the Kennedy pathway of glycerolipid biosynthesis (PubMed:27325892). Catalyzes triacylglycerol (TAG) accumulation involved in membrane lipid and oil biosynthesis, especially in seeds (PubMed:26586834, PubMed:27325892). Contributes also to the biosynthesis of both polar lipids and TAG in developing leaves, as well as lipid droplet production in developing pollen grains. Seems to not contribute to surface lipid biosynthesis (e.g. waxes and cutin) (PubMed:27325892). {ECO:0000269|PubMed:26586834, ECO:0000269|PubMed:27325892}. ARA:AT5G60620-MONOMER; R-ATH-1483166; 2.3.1.15; 2.3.1.15 43020 AtGPAT9 (EC 2.3.1.15) (Glycerol-3-phosphate acyltransferase 9) (Uncharacterized protein At5g60620) (Uncharacterized protein At5g60620/mup24_30) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; glycerol-3-phosphate O-acyltransferase activity [GO:0004366]; sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity [GO:0102420]; diacylglycerol biosynthetic process [GO:0006651]; triglyceride biosynthetic process [GO:0019432] locus:2175791; AT5G60620 Acyltransferase Os07g0531600 protein (Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase) Q8GVN6 Q8GVN6_ORYSJ P0681F05.133 Os07g0531600 OsJ_24543 OSNPB_070531600 ENOG411DWAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caleosin related protein Os02g0734600 protein (Putative calcium binding protein),Os02g0734600 protein Q6Z2H7,A3AB40 Q6Z2H7_ORYSJ,A3AB40_ORYSJ Os02g0734600 OSNPB_020734600 P0487D09.1 P0643A10.53,Os02g0734600 OsJ_08290 OSNPB_020734600 ENOG411DWAQ ERL1,ERECTA,ERL2 C0LGW6,Q42371,Q6XAT2,A0A1P8BE60,F4K6F3 ERL1_ARATH,ERECT_ARATH,ERL2_ARATH,A0A1P8BE60_ARATH,F4K6F3_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 (EC 2.7.11.1) (Protein ERECTA-like kinase 1),LRR receptor-like serine/threonine-protein kinase ERECTA (EC 2.7.11.1) (Protein QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1) (Protein QUANTITATIVE RESISTANCE TO RALSTONIA SOLANACEARUM 1) (Protein TRANSPIRATION EFFICIENCY 1),LRR receptor-like serine/threonine-protein kinase ERL2 (EC 2.7.11.1) (Protein ERECTA-like kinase 2),ERECTA-like 2,ERECTA-like 1 DISRUPTION PHENOTYPE: In er-104 and er-105, small curly leaves and compact inflorescence with short thick siliques, increased canalization of rosette leaf number during long days. {ECO:0000269|PubMed:17698961, ECO:0000269|PubMed:8624444}. Increase in stomatal index with respect to wild type.,Increased number of stomatal lineage ground cells (SLGCs) that fail to differentiate into stomata. Excessive asymmetric division and meristemoid formation in cotyledons.,compact rosette leaf short petiole round blade,Increased number of stomatal lineage ground cells (SLGCs) with respect to single er mutant.,altered leaf shape reduced fertilityelongated hypocotyl resulted from elongated epidermal and cortex cells elongated pedicel resulted from elongated epidermal pavement cells and increased cortex cell numbers,short siliques very few seeds elongated stems elongated hypocotyls resulted from elongated epidermal and cortex cells elongated pedicels resulted from elongated epidermal pavement cells and increased cortex cell numbers Short inflorescence stems; Short petioles; Blunt siliques-Y. Komeda-1996 FUNCTION: Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Redundantly involved with ER in procambial development regulation. Forms a functional ligand-receptor pair with EPF1 (AC Q8S8I4) (PubMed:22241782). Forms a constitutive complex with TMM involved in the recognition of the stomatal regulatory peptides EPF1, EPF2 and EPFL9/STOMAGEN (PubMed:28536146). {ECO:0000269|PubMed:14985254, ECO:0000269|PubMed:16002616, ECO:0000269|PubMed:17652352, ECO:0000269|PubMed:22241782, ECO:0000269|PubMed:23881395, ECO:0000269|PubMed:28536146}.,FUNCTION: Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Redundantly involved with ERL1 in procambial development regulation. Forms a functional ligand-receptor pair with EPF2 (AC Q8LC53) (PubMed:22241782). Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. A phloem-specific expression of ER is sufficient for proper inflorescence architecture (PubMed:22474391). Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Forms a constitutive complex with TMM involved in the recognition of the stomatal regulatory peptides EPF1, EPF2 and EPFL9/STOMAGEN (PubMed:28536146). {ECO:0000269|PubMed:11910003, ECO:0000269|PubMed:12874130, ECO:0000269|PubMed:14617092, ECO:0000269|PubMed:14985254, ECO:0000269|PubMed:15034716, ECO:0000269|PubMed:15998304, ECO:0000269|PubMed:16002616, ECO:0000269|PubMed:16007076, ECO:0000269|PubMed:16038894, ECO:0000269|PubMed:16126863, ECO:0000269|PubMed:17513501, ECO:0000269|PubMed:17652352, ECO:0000269|PubMed:17698961, ECO:0000269|PubMed:19346258, ECO:0000269|PubMed:19416942, ECO:0000269|PubMed:19589071, ECO:0000269|PubMed:22241782, ECO:0000269|PubMed:22474391, ECO:0000269|PubMed:23881395, ECO:0000269|PubMed:28536146, ECO:0000269|PubMed:8624444, ECO:0000269|Ref.9}.,FUNCTION: Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. {ECO:0000269|PubMed:14985254, ECO:0000269|PubMed:16002616, ECO:0000269|PubMed:17652352}. 2.7.11.1 106486,107334,106680,96154,101451 LRR receptor-like serine/threonine-protein kinase ERL1 (EC 2.7.11.1) (Protein ERECTA-like kinase 1),LRR receptor-like serine/threonine-protein kinase ERECTA (EC 2.7.11.1) (Protein QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1) (Protein QUANTITATIVE RESISTANCE TO RALSTONIA SOLANACEARUM 1) (Protein TRANSPIRATION EFFICIENCY 1),LRR receptor-like serine/threonine-protein kinase ERL2 (EC 2.7.11.1) (Protein ERECTA-like kinase 2),ERECTA-like 2,ERECTA-like 1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; embryo sac development [GO:0009553]; plant ovule development [GO:0048481]; stomatal complex morphogenesis [GO:0010103],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; peptide binding [GO:0042277]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein kinase activity [GO:0019199]; cellular heat acclimation [GO:0070370]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; inflorescence morphogenesis [GO:0048281]; leaf morphogenesis [GO:0009965]; plant-type cell wall organization [GO:0009664]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of cell adhesion [GO:0030155]; regulation of cell division [GO:0051302]; regulation of cell growth [GO:0001558]; regulation of plant organ morphogenesis [GO:1905421]; stomatal complex morphogenesis [GO:0010103]; transpiration [GO:0010148]; vasculature development [GO:0001944],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; embryo sac development [GO:0009553]; plant ovule development [GO:0048481]; stomatal complex morphogenesis [GO:0010103],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] DEVELOPMENTAL STAGE: At the vegetative stage, strongly expressed in the shoot meristem, leaf primordia and juvenile leaves. At the reproductive stage, localized in the young developing flowers. Expressed in inflorescence meristem and is up-regulated during flower initiation and formation of flower organs. Also found in cells that differentiate into pedicels. {ECO:0000269|PubMed:14985254}.,DEVELOPMENTAL STAGE: Strongly expressed in organ primordia and immature organs but weakly in mature organs. Observed in SAM at low levels during the vegetative growth with an increase at the transition to the reproductive growth phase. At the reproductive stage, localized in the young developing flowers. Expressed in inflorescence meristem and is up-regulated during flower initiation and formation of flower organs. Also found in cells that differentiate into pedicels. {ECO:0000269|PubMed:14985254, ECO:0000269|PubMed:9750343}.,DEVELOPMENTAL STAGE: At the vegetative stage, strongly expressed in the shoot meristem, leaf primordia and juvenile leaves. At the reproductive stage, localized in the young developing flowers. {ECO:0000269|PubMed:14985254}. TISSUE SPECIFICITY: Mostly expressed in developing organs, including bud clusters, flowers, siliques and young rosettes. Also detected in mature aboveground organs, such as leaves, stems and pedicels, but barely in roots. {ECO:0000269|PubMed:14985254}.,TISSUE SPECIFICITY: Mostly expressed in shoot apical meristems (SAM), organ primordia, flowers, siliques and young rosette leaves, and, to a lower extent, in stems and cauline leaves. Expressed in growing inflorescence stems and pedicels. Detected in epidermis, phloem and xylem. {ECO:0000269|PubMed:22474391, ECO:0000269|PubMed:8624444, ECO:0000269|PubMed:9750343}. locus:2167948;,locus:2005507;,locus:2182855; AT5G62230,AT2G26330,AT5G07180 LRR receptor-like serine threonine-protein kinase Os02g0777400 protein (Fragment),Os06g0130100 protein (Transmembrane protein kinase),Os06g0203800 protein (Putative receptor protein kinase),Os06g0130100 protein (Putative transmembrane protein kinase),Os09g0436500 protein (Fragment),Os06g0130100 protein (Fragment) Q0DX34,Q7XB99,Q69SP5,Q658G7,A0A0P0XM84,A0A0P0WSI5 Q0DX34_ORYSJ,Q7XB99_ORYSJ,Q69SP5_ORYSJ,Q658G7_ORYSJ,A0A0P0XM84_ORYSJ,A0A0P0WSI5_ORYSJ Os02g0777400 Os02g0777400 OSNPB_020777400,PK3 Os06g0130100 OSNPB_060130100,Os06g0203800 Os06g0203800 OSJNBa0016O19.39 OSNPB_060203800,Os06g0130100 OSNPB_060130100 P0493C11.1 P0538C01.27,Os09g0436500 OSNPB_090436500,Os06g0130100 OSNPB_060130100 ENOG411DWAR GLP4,GLP10 P94014,Q9FZ27,Q9M263,Q3EAG0 GL21_ARATH,GL22_ARATH,GL24_ARATH,Q3EAG0_ARATH Germin-like protein subfamily 2 member 1,Germin-like protein subfamily 2 member 2,Germin-like protein subfamily 2 member 4,Germin-like protein 10 No increased tolerance to arsenic compared to wild type. FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 22868,23441,23550,20323 Germin-like protein subfamily 2 member 1,Germin-like protein subfamily 2 member 2,Germin-like protein subfamily 2 member 4,Germin-like protein 10 apoplast [GO:0048046]; cell wall [GO:0005618]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; plasmodesmata-mediated intercellular transport [GO:0010497]; regulation of root development [GO:2000280]; response to cold [GO:0009409],apoplast [GO:0048046]; cell wall [GO:0005618]; plasmodesma [GO:0009506]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; plasmodesmata-mediated intercellular transport [GO:0010497]; regulation of root development [GO:2000280],apoplast [GO:0048046]; cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; plasmodesmata-mediated intercellular transport [GO:0010497]; regulation of root development [GO:2000280],extracellular region [GO:0005576]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2012260;,locus:2827077;,locus:2079582; AT1G09560,AT1G02335,AT3G62020 germin-like protein Germin-like protein 1-1 (Germin-like protein 4) (OsGER4),Germin-like protein 5-1,Os01g0249200 protein (Putative nectarin I) (Putative oxalate oxidase (Germin protein)) (cDNA clone:006-205-E11, full insert sequence) Q7F731,Q6I544,Q9XHW8 GL11_ORYSJ,GL52_ORYSJ,Q9XHW8_ORYSJ GER4 Os01g0284500 LOC_Os01g18170 OsJ_001298 OSJNBa0004B13.19 P0498A12.11 P0581F09.32,Os05g0277500 LOC_Os05g19670 OsJ_017118 OsJ_17888 OSJNBa0055E23.9,OSJNBa0049B20.25 Os01g0249200 OsJ_01106 OSNPB_010249200 P0034C11.33 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DWAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter NA NA NA NA NA NA NA ENOG411DWAT LRP1 Q94CK9 LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16740146}. FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. 33618 Protein LATERAL ROOT PRIMORDIUM 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; root development [GO:0048364] DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. locus:505006601; AT5G12330 Domain of unknown function (DUF702) Os01g0954500 protein (Putative LRP1) (cDNA clone:J033093N15, full insert sequence) Q941Y5 Q941Y5_ORYSJ Os01g0954500 Os01g0954500 B1139B11.6 OSNPB_010954500 P0431G06.36 ENOG411DWAU 1MMP O23507 1MMP_ARATH Metalloendoproteinase 1-MMP (At1-MMP) (EC 3.4.24.-) FUNCTION: Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (PubMed:10574937). Can cleave myelin basic protein as well as fluorigenic peptide substrates, McaPLANvaDpaAR-NH(2) and McaPChaGNvaHADpa-NH(2) 4-fold more efficiently than McaPLGLDpaAR-NH(2) (QF24) (PubMed:10574937). Active on myelin basic protein (MBP) and, to some extent, on McaPLGLDpaAR-NH(2) (QF24) and beta-casein (PubMed:24156403). {ECO:0000269|PubMed:10574937, ECO:0000269|PubMed:24156403, ECO:0000303|PubMed:10574937}. R-ATH-1592389;R-ATH-6798695; 3.4.24.- 40528 Metalloendoproteinase 1-MMP (At1-MMP) (EC 3.4.24.-) anchored component of membrane [GO:0031225]; extracellular matrix [GO:0031012]; plasma membrane [GO:0005886]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Mostly expressed in flowers, roots and stems, and, to a lower extent, in leaves. {ECO:0000269|PubMed:10574937}. locus:2130928; AT4G16640 metalloendoproteinase 1-like Matrixin family protein, expressed (Os10g0557900 protein) (Putative metalloproteinase),Os10g0558150 protein (Putative metalloproteinase),Os10g0558125 protein (Putative metalloproteinase),Os10g0558100 protein (Fragment) Q94LQ4,Q94LQ0,Q94LQ1,A0A0P0XXH3 Q94LQ4_ORYSJ,Q94LQ0_ORYSJ,Q94LQ1_ORYSJ,A0A0P0XXH3_ORYSJ Os10g0557900 LOC_Os10g40830 Os10g0557900 OSJNBa0010C11.5 OSNPB_100557900,OSJNBa0010C11.15 Os10g0558150 OSNPB_100558150,OSJNBa0010C11.14 Os10g0558125 OSNPB_100558125,Os10g0558100 OSNPB_100558100 ENOG411DWAV CYP96A1,CYP96A9,CYP96A10 O22189,Q9SVB0,F4JW26 O22189_ARATH,Q9SVB0_ARATH,F4JW26_ARATH Cytochrome P450, family 96, subfamily A, polypeptide 1 (Putative cytochrome P450),Cytochrome P450, family 96, subfamily A, polypeptide 9 (Cytochrome P450-like protein),Cytochrome P450, family 96, subfamily A, polypeptide 10 ARA:GQT-380-MONOMER;,ARA:GQT-2596-MONOMER; 58861,58510,59279 Cytochrome P450, family 96, subfamily A, polypeptide 1 (Putative cytochrome P450),Cytochrome P450, family 96, subfamily A, polypeptide 9 (Cytochrome P450-like protein),Cytochrome P450, family 96, subfamily A, polypeptide 10 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2058558;,locus:2122477;,locus:2122491; AT2G23180,AT4G39480,AT4G39490 cytochrome P450 Cytochrome P450 family protein, expressed (Os03g0140100 protein),Os01g0183600 protein (Putative cytochrome P450) (cDNA clone:002-172-C07, full insert sequence),Os03g0140100 protein (Fragment),Os03g0139600 protein Q10S02,Q9LGS7,A0A0P0VSX6,A0A0P0VSU7 Q10S02_ORYSJ,Q9LGS7_ORYSJ,A0A0P0VSX6_ORYSJ,A0A0P0VSU7_ORYSJ LOC_Os03g04650 Os03g0140100 OsJ_09347 OSNPB_030140100,Os01g0183600 OSNPB_010183600 P0489A01.14,Os03g0140100 OSNPB_030140100,Os03g0139600 OSNPB_030139600 ENOG411DWAX emb2004 Q93ZV8 Q93ZV8_ARATH RNI-like superfamily protein (Uncharacterized protein At1g10510) atpol{lambda] mutants exhibit hypersensitive growth response to UV-B irradiation. Reduced proficiency in double strand break repair and nucleotide excision repair. Embryo defective; Globular-D. Meinke-2003 64722 RNI-like superfamily protein (Uncharacterized protein At1g10510) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2194604; AT1G10510 LRR Os06g0237502 protein A0A0P0WV17 A0A0P0WV17_ORYSJ Os06g0237502 OSNPB_060237502 ENOG411DWAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Squamous cell carcinoma antigen recognized by T-cells NA NA NA NA NA NA NA ENOG411DWAZ MIP1 Q8RX22 MIP1_ARATH MND1-interacting protein 1 (AtMIP1) 79328 MND1-interacting protein 1 (AtMIP1) cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:2033765; AT1G32530 MND1-interacting protein Os09g0371700 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:001-122-C02, full insert sequence) Q6H4E3 Q6H4E3_ORYSJ Os09g0371700 B1168F12.32 OSNPB_090371700 ENOG411DWA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os06g0211600 protein (Putative galactoside 2-alpha-L-fucosyltransferase) (cDNA clone:J033024H19, full insert sequence) Q69TW2 Q69TW2_ORYSJ Os06g0211600 Os06g0211600 OSNPB_060211600 P0021C04.30 P0701E03.7 ENOG411DWA4 F4K6N3,F4K6N2 F4K6N3_ARATH,F4K6N2_ARATH Amidase family protein 72950,72234 Amidase family protein amidase activity [GO:0004040] locus:2183374; AT5G07360 glutamyl-tRNA(Gln) amidotransferase subunit A-like Os11g0536800 protein,Os11g0536800 protein (Fragment) Q0ISC5,A0A0P0Y330 Q0ISC5_ORYSJ,A0A0P0Y330_ORYSJ Os11g0536800 Os11g0536800 OsJ_34134 OSNPB_110536800,Os11g0536800 OSNPB_110536800 ENOG411DWA7 SEC10a,SEC10b,SEC10 X5JA13,X5JB51,F4K0X7 SECAA_ARATH,SECAB_ARATH,F4K0X7_ARATH Exocyst complex component SEC10a (AtSec10a) (Exocyst complex component 5),Exocyst complex component SEC10b (AtSec10b),Exocyst complex component sec10 DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with SEC10b. {ECO:0000269|PubMed:24728280}.,DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with SEC10a. {ECO:0000269|PubMed:24728280}. FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. {ECO:0000269|PubMed:20870962, ECO:0000269|PubMed:23163883}. R-ATH-5620916; 89694,90256,89037 Exocyst complex component SEC10a (AtSec10a) (Exocyst complex component 5),Exocyst complex component SEC10b (AtSec10b),Exocyst complex component sec10 cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; exocytosis [GO:0006887]; vesicle docking [GO:0048278],cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; acceptance of pollen [GO:0060321]; exocytosis [GO:0006887]; vesicle docking [GO:0048278],exocyst [GO:0000145]; exocytosis [GO:0006887]; vesicle docking [GO:0048278] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:24728280}. AT5G12370,AT5G12365 exocyst complex component Exocyst complex component 5 (Exocyst complex component Sec10),Os12g0238100 protein (Fragment) Q2QV94,A0A0P0Y8I5 EXOC5_ORYSJ,A0A0P0Y8I5_ORYSJ SEC10 Os12g0238100 LOC_Os12g13590 OSJNBb0001P17,Os12g0238100 OSNPB_120238100 FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. ENOG411DWA8 Q0IGH7,A0A1P8B8X1,F4JGS2 Q0IGH7_ARATH,A0A1P8B8X1_ARATH,F4JGS2_ARATH At4g04190 (Transmembrane protein),Transmembrane protein 21249,15846,12796 At4g04190 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2137271; AT4G04190 NA Os04g0410300 protein (cDNA clone:002-175-F06, full insert sequence),Os01g0191000 protein Q0JDE5,A0A0P0UZM7 Q0JDE5_ORYSJ,A0A0P0UZM7_ORYSJ Os04g0410300 Os04g0410300 OSNPB_040410300,Os01g0191000 OSNPB_010191000 ENOG411DWA9 Q9LQ96 Q9LQ96_ARATH Polyphosphoinositide binding protein, putative (Putative polyphosphoinositide-binding protein) (Sec14p-like phosphatidylinositol transfer family protein) (T1N6.1 protein) 29216 Polyphosphoinositide binding protein, putative (Putative polyphosphoinositide-binding protein) (Sec14p-like phosphatidylinositol transfer family protein) (T1N6.1 protein) locus:2198135; AT1G01630 Random slug protein Os03g0850700 protein (Polyphosphoinositide-binding protein, putative, expressed) (Putative phosphatidylinositol/phosphatidylcholine transfer protein) (cDNA clone:006-310-H09, full insert sequence) (cDNA clone:J013030L21, full insert sequence) Q851Z2 Q851Z2_ORYSJ LOC_Os03g63370 Os03g0850700 OSJNBa0015N08.9 OSNPB_030850700 ENOG411ED0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavodoxin-like fold NA NA NA NA NA NA NA ENOG411ED0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Two-component response regulator-like NA NA NA NA NA NA NA ENOG411ED0M O65513,A0A1P8AXD2,A0A1P8AXI8,A0A1P8AXD9,F4IPL5,B3H797,F4JPN3 O65513_ARATH,A0A1P8AXD2_ARATH,A0A1P8AXI8_ARATH,A0A1P8AXD9_ARATH,F4IPL5_ARATH,B3H797_ARATH,F4JPN3_ARATH Transmembrane/coiled-coil protein (DUF726) (Uncharacterized protein AT4g36210) (Uncharacterized protein F23E13.100),Transmembrane/coiled-coil protein (DUF726) 56252,65910,58215,53895,70820,72748,59766 Transmembrane/coiled-coil protein (DUF726) (Uncharacterized protein AT4g36210) (Uncharacterized protein F23E13.100),Transmembrane/coiled-coil protein (DUF726) integral component of membrane [GO:0016021] locus:2053154;,locus:2122269; AT4G36210,AT2G18100 Protein of unknown function (DUF726) NA NA NA NA NA NA NA ENOG411ED0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3537) NA NA NA NA NA NA NA ENOG411ED0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP NA NA NA NA NA NA NA ENOG411ED02 Q6NKT4 Q6NKT4_ARATH At4g14650 70003 At4g14650 locus:2130050; AT4G14650 NA NA NA NA NA NA NA NA ENOG411ED04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411DSUY BRIZ2 O80996,F4ITK6 O80996_ARATH,F4ITK6_ARATH At2g26000 (BRIZ2) (Uncharacterized protein At2g26000) (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein growth arrest (embryos are slow to emerge from the seed coat; after emergence the embryos remain white with unexpanded cotyledons even after twelve days on GM media) Seedling lethal; Pale green embryos; Delayed germination-J. Callis-2010 53777,51634 At2g26000 (BRIZ2) (Uncharacterized protein At2g26000) (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein ubiquitin ligase complex [GO:0000151]; protein heterodimerization activity [GO:0046982]; ubiquitin binding [GO:0043130]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; regulation of seed germination [GO:0010029],ubiquitin ligase complex [GO:0000151]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; regulation of seed germination [GO:0010029] locus:2057469; AT2G26000 Brca1-associated BRAP2-like protein (Os02g0182900 protein) Q6H890 Q6H890_ORYSJ Os02g0182900 Os02g0182900 OJ1572_F02.2 OSNPB_020182900 ENOG411E53G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0242500 protein C7J9S7 C7J9S7_ORYSJ Os12g0242500 Os12g0242500 OSNPB_120242500 ENOG411E53F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0128300 protein) (cDNA clone:002-118-E07, full insert sequence) Q9SNL4 Q9SNL4_ORYSJ Os03g0128300 LOC_Os03g03630 Os03g0128300 OsJ_09263 OSNPB_030128300 ENOG411E53E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0445500 protein Q0J1E8 Q0J1E8_ORYSJ Os09g0445500 OSNPB_090445500 ENOG411E53D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0569100 protein) (Os12g0569200 protein) Q2QND9 Q2QND9_ORYSJ Os12g0569200 LOC_Os12g38140 Os12g0569100 OSNPB_120569200 ENOG411E53A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0833400 protein (cDNA clone:001-206-F04, full insert sequence) (cDNA clone:J023141C24, full insert sequence) Q5QLC1 Q5QLC1_ORYSJ Os01g0833400 OsJ_03973 OSNPB_010833400 P0460C04.21 ENOG411E53N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM Os12g0478900 protein (SAM domain family protein) Q2QQY1 Q2QQY1_ORYSJ LOC_Os12g29480 Os12g0478900 OsJ_36079 OSNPB_120478900 ENOG411E53M MBB18.26 Q570M0,F4JH89 Q570M0_ARATH,F4JH89_ARATH Cotton fiber protein (Uncharacterized protein At5g38700),Cotton fiber protein 21671,20219 Cotton fiber protein (Uncharacterized protein At5g38700),Cotton fiber protein locus:2159843;,locus:2132153; AT5G38700,AT4G02170 long cell-linked locus protein Long cell-linked locus protein, putative, expressed (Os03g0302800 protein) (cDNA clone:006-301-B04, full insert sequence),Os11g0141600 protein,Os01g0861400 protein Q10MM6,Q2RAQ7,A0A0P0VAQ8 Q10MM6_ORYSJ,Q2RAQ7_ORYSJ,A0A0P0VAQ8_ORYSJ Os03g0302800 LOC_Os03g19070 Os03g0302800 OsJ_10535 OSNPB_030302800,Os11g0141600 LOC_Os11g04580 OSNPB_110141600,Os01g0861400 OSNPB_010861400 ENOG411E53K Q96319 ERH_ARATH Enhancer of rudimentary homolog FUNCTION: May have a role in the cell cycle. 12502 Enhancer of rudimentary homolog cell cycle [GO:0007049]; positive regulation of Notch signaling pathway [GO:0045747]; pyrimidine nucleotide biosynthetic process [GO:0006221] locus:2183790; AT5G10810 May have a role in the cell cycle (By similarity) Os04g0499200 protein (Fragment),Os02g0611450 protein (Fragment) Q0JC05,A0A0N7KFN6 Q0JC05_ORYSJ,A0A0N7KFN6_ORYSJ Os04g0499200 Os04g0499200 OSNPB_040499200,Os02g0611450 OSNPB_020611450 ENOG411E53J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411E53I Q9STN5,F4JFX5 Y4833_ARATH,F4JFX5_ARATH Uncharacterized protein At4g08330, chloroplastic,Uncharacterized protein 18206,17079 Uncharacterized protein At4g08330, chloroplastic,Uncharacterized protein chloroplast [GO:0009507]; plasma membrane [GO:0005886] locus:2137455; AT4G08330 NA NA NA NA NA NA NA NA ENOG411E53H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os01g0182100 protein,Os01g0119500 protein (cDNA clone:001-114-F05, full insert sequence),Os01g0123200 protein,DUF1618 superfamily member protein (Expressed protein) (Os03g0247300 protein),Os03g0247250 protein Q9AWM1,Q5ZDT0,Q5ZCB7,Q10P48,A0A0P0VVF0 Q9AWM1_ORYSJ,Q5ZDT0_ORYSJ,Q5ZCB7_ORYSJ,Q10P48_ORYSJ,A0A0P0VVF0_ORYSJ Os01g0182100 OsJ_00636 OSNPB_010182100 P0666G04.21,Os01g0119500 OSNPB_010119500 P0494A10.34 P0698A04.18,Os01g0123200 OsJ_00190 OSNPB_010123200 P0037C04.6 P0445D12.30,Sc-j LOC_Os03g14310 Os03g0247300 OsJ_10132 OSNPB_030247300,Os03g0247250 OSNPB_030247250 ENOG411E53V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0759900 protein (cDNA clone:006-206-H06, full insert sequence),Os02g0548900 protein (Fragment) Q6K8D8,A0A0N7KFG4 Q6K8D8_ORYSJ,A0A0N7KFG4_ORYSJ Os02g0759900 OJ1175_B01.12 OsJ_08463 OSNPB_020759900,Os02g0548900 OSNPB_020548900 ENOG411E53U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dynein light chain NA NA NA NA NA NA NA ENOG411E53S A0A1P8B2W7,F4IFV5 A0A1P8B2W7_ARATH,F4IFV5_ARATH Subtilisin-like protease 17403,21423 Subtilisin-like protease peptidase activity [GO:0008233],mitochondrion [GO:0005739]; peptidase activity [GO:0008233] locus:504956013; AT2G33585 NA Os08g0512900 protein (cDNA, clone: J090030E24, full insert sequence) Q6Z8N4 Q6Z8N4_ORYSJ Os08g0512900 OsJ_27913 OSNPB_080512900 P0711H09.16 ENOG411E53R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 C2H2 zinc finger protein (Os01g0839100 protein) (cDNA clone:002-140-F08, full insert sequence),Os05g0460900 protein,Os09g0483800 protein (Fragment) Q5NA09,A0A0N7KKX2,A0A0P0XND2 Q5NA09_ORYSJ,A0A0N7KKX2_ORYSJ,A0A0P0XND2_ORYSJ Os01g0839100 OSNPB_010839100 P0031D11.27 P0408C03.2,Os05g0460900 OSNPB_050460900,Os09g0483800 OSNPB_090483800 ENOG411E53Q Q9FN33 Q9FN33_ARATH Transcriptional regulator ATRX-like protein (Uncharacterized protein At5g53930) (Uncharacterized protein At5g53930/K19P17_10) 59398 Transcriptional regulator ATRX-like protein (Uncharacterized protein At5g53930) (Uncharacterized protein At5g53930/K19P17_10) locus:2154749; AT5G53930 NA Os07g0107900 protein Q8H3W7 Q8H3W7_ORYSJ P0585H11.111 Os07g0107900 OsJ_22812 OSNPB_070107900 ENOG411E537 MVA3.190 Q93ZT2 Q93ZT2_ARATH DnaJ/Hsp40 cysteine-rich domain superfamily protein (Uncharacterized protein At5g17840) 16422 DnaJ/Hsp40 cysteine-rich domain superfamily protein (Uncharacterized protein At5g17840) heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] locus:2175966; AT5G17840 NA Os03g0656201 protein B9FA44 B9FA44_ORYSJ Os03g0656201 Os03g0656201 OsJ_11959 OSNPB_030656201 ENOG411E536 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os11g0582100 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J013159H10, full insert sequence) Q2R227 Q2R227_ORYSJ Os11g0582100 LOC_Os11g37230 Os11g0582100 OSNPB_110582100 ENOG411E535 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0502000 protein B9FFZ3 B9FFZ3_ORYSJ Os04g0502000 OsJ_15358 OSNPB_040502000 ENOG411E533 Q84Q60,F4K4U0 Q84Q60_ARATH,F4K4U0_ARATH At5g49350 (Glycine-rich protein family),Glycine-rich protein family 28907,23401 At5g49350 (Glycine-rich protein family),Glycine-rich protein family locus:2157984; AT5G49350 NA NA NA NA NA NA NA NA ENOG411E532 CSP3,CSP1,CSDP1 Q94C69,O65639,A0A1P8B8F3 CSP3_ARATH,CSP1_ARATH,A0A1P8B8F3_ARATH Cold shock domain-containing protein 3 (AtCSP3),Cold shock protein 1 (AtCSP1) (Cold shock domain-containing protein 1),Cold shock domain protein 1 DISRUPTION PHENOTYPE: Sensitive to freezing. {ECO:0000269|PubMed:19556243}. Sensitive to freezing-R. Imai-2009 FUNCTION: Chaperone that binds to RNA, single- (ssDNA) and double-stranded (dsDNA) DNA, and unwinds nucleic acid duplex. Promotes freezing tolerance. {ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19556243}.,FUNCTION: Chaperone that binds to RNA, single- (ssDNA) and double-stranded (dsDNA) DNA, and unwinds nucleic acid duplex. Exhibits a DNA melting activity. May be involved in cold resistance. Prevents seed germination under dehydration or salt stress conditions. {ECO:0000269|PubMed:17169986, ECO:0000269|PubMed:19258348, ECO:0000269|PubMed:19269998}. R-ATH-72163;R-ATH-72165; 29564,30088,26680 Cold shock domain-containing protein 3 (AtCSP3),Cold shock protein 1 (AtCSP1) (Cold shock domain-containing protein 1),Cold shock domain protein 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; cold acclimation [GO:0009631]; DNA duplex unwinding [GO:0032508]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; unidimensional cell growth [GO:0009826],cytoplasm [GO:0005737]; nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; zinc ion binding [GO:0008270]; cold acclimation [GO:0009631]; DNA duplex unwinding [GO:0032508]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; RNA secondary structure unwinding [GO:0010501],DNA binding [GO:0003677]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: In flowers, present in pollen within anthers. High expression in the earliest stage of silique development, with a decrease during the middle stages of silique development and subsequently an increase during the later stages. {ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19556243}.,DEVELOPMENTAL STAGE: High expression in the earliest stage of silique development, with a decrease during the middle stages of silique development and subsequently an increase during the later stages. {ECO:0000269|PubMed:19269998}. TISSUE SPECIFICITY: Mostly expressed in shoot and root apices, and siliques, and, to a lower extent, in roots, cotyledons, stems, shoots, leaves, floral buds and flowers. {ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19556243}.,TISSUE SPECIFICITY: Mostly expressed in shoot apices and siliques, and, to a lower extent, in roots, cotyledons, stems, shoots, leaves, floral buds and flowers. {ECO:0000269|PubMed:19269998}. locus:2827810;,locus:2135139; AT2G17870,AT4G36020 cold shock domain protein 1 NA NA NA NA NA NA NA ENOG411E531 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0244900 protein Q6ZLN9 Q6ZLN9_ORYSJ Os07g0244900 Os07g0244900 OJ1058_C08.12 OsJ_23690 OSNPB_070244900 ENOG411E530 Q9LSK9 Y5566_ARATH Uncharacterized protein At5g65660 15085 Uncharacterized protein At5g65660 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2155745; AT5G65660 Inherit from euNOG: hydroxyproline-rich glycoprotein NA NA NA NA NA NA NA ENOG411EM39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DegT/DnrJ/EryC1/StrS aminotransferase family NA NA NA NA NA NA NA ENOG411EM33 LA1 Q93ZV7 LA1_ARATH La protein 1 (AtLa1) DISRUPTION PHENOTYPE: Embryonic-lethal with deficient embryos arrested at early globular stage of development characterized by nucleolar hypertrophy. {ECO:0000269|PubMed:17459889}. Embryonic-lethal with deficient embryos arrested at early globular stage of development. Mutant embryonic cells display a nucleolar hypertrophy. Embryo defective; Globular-C. Bousquet-Antonelli-2007 FUNCTION: Binds to the 3' poly(U) terminus of nascent RNA polymerase III transcripts, protecting them from exonuclease digestion and facilitating their folding and maturation. {ECO:0000269|PubMed:17459889}. 48096 La protein 1 (AtLa1) cell wall [GO:0005618]; cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; RNA binding [GO:0003723]; ncRNA processing [GO:0034470] TISSUE SPECIFICITY: Expressed ubiquitously (at protein level). {ECO:0000269|PubMed:17459889}. locus:2125702; AT4G32720 La protein Os02g0610400 protein (Putative RNA recognition motif (RRM)-containing protein) (cDNA clone:J033094I09, full insert sequence),OSJNBa0067K08.18 protein (Os04g0497600 protein) (cDNA clone:001-027-D05, full insert sequence) (cDNA clone:J013149O10, full insert sequence) Q6K6X2,Q7XQH8 Q6K6X2_ORYSJ,Q7XQH8_ORYSJ Os02g0610400 Os02g0610400 OJ1476_F05.15 OsJ_07484 OSNPB_020610400 P0496E03.36,Os04g0497600 Os04g0497600 OSJNBa0067K08.18 OSNPB_040497600 ENOG411EM31 SNRNP31 Q9CAE4 U1131_ARATH U11/U12 small nuclear ribonucleoprotein 31 kDa protein (U11/U12 snRNP 31 kDa protein) (U11/U12-31K) DISRUPTION PHENOTYPE: Embryo lethal when homozygous, and defective for seed maturation when heterozygous. {ECO:0000269|PubMed:21148817}. Null: Embryo defective; Knockdown: Short inflorescence stems; Serrated leaves; Rosette leaf formation continues after bolting-H. Kang-2010 FUNCTION: RNA chaperone required for proper U12 intron splicing and for normal growth and development of plants. Mainly responsible for meristem activity. Plays a role in regulating cell division. {ECO:0000269|PubMed:21148817, ECO:0000269|PubMed:22912901}. R-ATH-72165; 29367 U11/U12 small nuclear ribonucleoprotein 31 kDa protein (U11/U12 snRNP 31 kDa protein) (U11/U12-31K) nucleus [GO:0005634]; U12-type spliceosomal complex [GO:0005689]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; developmental process [GO:0032502]; mRNA splicing, via spliceosome [GO:0000398]; regulation of cell division [GO:0051302] TISSUE SPECIFICITY: Ubiquitous. Abundantly expressed in the shoot apical neristem. {ECO:0000269|PubMed:21148817, ECO:0000269|PubMed:22912901}. locus:2075860; AT3G10400 Zinc knuckle Os09g0549500 protein A0A0P0XR38 A0A0P0XR38_ORYSJ Os09g0549500 OSNPB_090549500 ENOG411EM30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411EM3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM3W Q9S9P0 Q9S9P0_ARATH T24D18.4 (Tudor/PWWP/MBT superfamily protein) 109595 T24D18.4 (Tudor/PWWP/MBT superfamily protein) chromatin [GO:0000785]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; DNA repair [GO:0006281]; microsporogenesis [GO:0009556]; mitotic sister chromatid cohesion [GO:0007064] locus:2200557; AT1G15940 NA NA NA NA NA NA NA NA ENOG411EM3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3453) NA NA NA NA NA NA NA ENOG411EM3T A0A1P8B7L2,F4JNR2 A0A1P8B7L2_ARATH,F4JNR2_ARATH CRS1 / YhbY (CRM) domain-containing protein 93647,96334 CRS1 / YhbY (CRM) domain-containing protein RNA binding [GO:0003723] locus:2134438; AT4G29750 CRS1_YhbY NA NA NA NA NA NA NA ENOG411EM3S CFM3A,CFM3B F4J2U9,F4JVH1 CFM3A_ARATH,CFM3B_ARATH CRM-domain containing factor CFM3A, chloroplastic/mitochondrial (Protein CRM FAMILY MEMBER 3A) (AtCFM3a),CRM-domain containing factor CFM3B, chloroplastic (Protein CRM FAMILY MEMBER 3B) (AtCFM3b) DISRUPTION PHENOTYPE: Albino seeds that fail to germinate or yield very slow-growing seedlings and stunted plants. The seeds of the double mutant plants cfm3a-4 and cfm3b-2 fail to germinate. {ECO:0000269|PubMed:18799595}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the seeds of the double mutant plants cfm3a-4 and cfm3b-2 fail to germinate. FUNCTION: Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on subgroup IIB introns. The substrates of the subgroup IIB also require the CRM domain proteins CAF1 or CAF2, with a simultaneous binding of CFM3A and CAF1 or CAF2. Required for seed development. May influence the biogenesis of the mitochondrial small ribosomal subunit. {ECO:0000269|PubMed:18799595}.,FUNCTION: Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on subgroup IIB introns. The substrates of the subgroup IIB also require the CRM domain proteins CAF1 or CAF2, with a simultaneous binding of CFM3B and CAF1 or CAF2. Required for seed development. {ECO:0000269|PubMed:18799595}. 100170,102031 CRM-domain containing factor CFM3A, chloroplastic/mitochondrial (Protein CRM FAMILY MEMBER 3A) (AtCFM3a),CRM-domain containing factor CFM3B, chloroplastic (Protein CRM FAMILY MEMBER 3B) (AtCFM3b) chloroplast [GO:0009507]; intracellular ribonucleoprotein complex [GO:0030529]; mitochondrion [GO:0005739]; RNA binding [GO:0003723]; Group II intron splicing [GO:0000373]; mRNA processing [GO:0006397]; seed development [GO:0048316],chloroplast [GO:0009507]; intracellular ribonucleoprotein complex [GO:0030529]; RNA binding [GO:0003723]; Group II intron splicing [GO:0000373]; mRNA processing [GO:0006397]; seed development [GO:0048316] locus:2094558;,locus:2129840; AT3G23070,AT4G14510 Chloroplastic group IIA intron splicing facilitator CRS1 CRM-domain containing factor CFM3, chloroplastic/mitochondrial (Protein CRM FAMILY MEMBER 3) (OsCFM3) Q2R1U8 CFM3_ORYSJ CFM3 Os11g0592400 LOC_Os11g37990 OSNPB_110592400 DISRUPTION PHENOTYPE: Albino leaves with little, if any, plastid rRNA. {ECO:0000269|PubMed:18799595}. FUNCTION: Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on subgroup IIB introns. The substrates of the subgroup IIB also require the CRM domain proteins CAF1 or CAF2, with a simultaneous binding of CFM3 and CAF1 or CAF2 (PubMed:18799595). May influence the biogenesis of the mitochondrial small ribosomal subunit (By similarity). {ECO:0000250|UniProtKB:F4J2U9, ECO:0000269|PubMed:18799595}. ENOG411EM3R CRS1 Q9LF10,A0A1P8BGS4 CRS1_ARATH,A0A1P8BGS4_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Chloroplastic RNA splicing factor 1) (Protein CHLOROPLAST RNA SPLICING 1),Chloroplast splicing factor-like protein DISRUPTION PHENOTYPE: Plants are albinos. {ECO:0000269|PubMed:17071648}. Ivory small,variegated FUNCTION: Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. May also be involved in chloroplast protein translation. {ECO:0000269|PubMed:17071648}. 83591,63346 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Chloroplastic RNA splicing factor 1) (Protein CHLOROPLAST RNA SPLICING 1),Chloroplast splicing factor-like protein chloroplast stroma [GO:0009570]; intracellular ribonucleoprotein complex [GO:0030529]; RNA binding [GO:0003723]; Group II intron splicing [GO:0000373]; mRNA processing [GO:0006397]; regulation of translation [GO:0006417],RNA binding [GO:0003723] locus:2181372; AT5G16180 Chloroplastic group IIA intron splicing facilitator CRS1 Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Chloroplastic RNA splicing factor 1) (Protein CHLOROPLAST RNA SPLICING 1) Q6YYA3 CRS1_ORYSJ Os08g0360100 LOC_Os08g27150 OJ1014_E02.14 FUNCTION: Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation (By similarity). {ECO:0000250}. ENOG411EM3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY OJ990528_30.7 protein (OSJNBb0091E11.2 protein) (Os04g0492900 protein),Os04g0492900 protein (Fragment),Os04g0492900 protein Q7XSB6,A0A0P0WBZ6,A0A0P0WBZ0 Q7XSB6_ORYSJ,A0A0P0WBZ6_ORYSJ,A0A0P0WBZ0_ORYSJ Os04g0492900 OJ990528_30.7 OSJNBb0091E11.2 OSNPB_040492900,Os04g0492900 OSNPB_040492900 ENOG411EM3P EMB1865 Q9LS51 Q9LS51_ARATH CRS1 / YhbY (CRM) domain-containing protein (Uncharacterized protein At3g18390) Embryo defective; Globular-D. Meinke-2002 95997 CRS1 / YhbY (CRM) domain-containing protein (Uncharacterized protein At3g18390) chloroplast [GO:0009507]; RNA binding [GO:0003723]; response to abscisic acid [GO:0009737] locus:2094997; AT3G18390 CRS1_YhbY Os05g0551900 protein A0A0P0WQC0 A0A0P0WQC0_ORYSJ Os05g0551900 OSNPB_050551900 ENOG411EM3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY NA NA NA NA NA NA NA ENOG411EM3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY Os06g0304500 protein Q0DCP4 Q0DCP4_ORYSJ Os06g0304500 Os06g0304500 OsJ_21087 OSNPB_060304500 ENOG411EM3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY NA NA NA NA NA NA NA ENOG411EM3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY NA NA NA NA NA NA NA ENOG411EM3I Q9LT57,A0A1I9LTS8 Q9LT57_ARATH,A0A1I9LTS8_ARATH RNA-binding CRS1 / YhbY (CRM) domain protein 57003,63224 RNA-binding CRS1 / YhbY (CRM) domain protein RNA binding [GO:0003723] locus:2091458; AT3G27550 CRS1_YhbY Os05g0145300 protein (Unknow protein),Os05g0145300 protein (Fragment) Q6AUH9,A0A0P0WHU0 Q6AUH9_ORYSJ,A0A0P0WHU0_ORYSJ Os05g0145300 OsJ_17096 OSJNBb0015A05.5 OSNPB_050145300,Os05g0145300 OSNPB_050145300 ENOG411EM3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY NA NA NA NA NA NA NA ENOG411EM3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolase-like protein (Os01g0885600 protein) Q5N8H1 Q5N8H1_ORYSJ Os01g0885600 Os01g0885600 OsJ_04329 OSNPB_010885600 P0408G07.19 ENOG411EM3E F4JQ92,A0A1P8B635,F4JQ91,F4JQ90 F4JQ92_ARATH,A0A1P8B635_ARATH,F4JQ91_ARATH,F4JQ90_ARATH FGGY family of carbohydrate kinase 49218,50308,53995,62552 FGGY family of carbohydrate kinase kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; carbohydrate metabolic process [GO:0005975],chloroplast [GO:0009507]; kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; carbohydrate metabolic process [GO:0005975] locus:2118761; AT4G30310 FGGY carbohydrate kinase domain-containing Os02g0177900 protein (Fragment) Q0E3F2,A0A0N7KET0 Q0E3F2_ORYSJ,A0A0N7KET0_ORYSJ Os02g0177900 Os02g0177900 OSNPB_020177900,Os02g0177900 OSNPB_020177900 ENOG411EM3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FGGY family of carbohydrate kinases C-terminal domain NA NA NA NA NA NA NA ENOG411EM3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411EM3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0540200 protein (cDNA clone:001-103-G10, full insert sequence) Q5TKQ6 Q5TKQ6_ORYSJ Os05g0540200 Os05g0540200 OJ1362_G11.2 OsJ_19382 OSJNBa0052K01.24 OSNPB_050540200 ENOG411EM3A Q9C9X2,Q5PP31,Q45GM3,Q45GM2,A0A1P8AV42 Q9C9X2_ARATH,Q5PP31_ARATH,Q45GM3_ARATH,Q45GM2_ARATH,A0A1P8AV42_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein T23K23.7),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At1g68080) (Expressed protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Expressed protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 43122,43893,41540,38210,40769 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein T23K23.7),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At1g68080) (Expressed protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Expressed protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein oxidoreductase activity [GO:0016491],dioxygenase activity [GO:0051213]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2200291; AT1G68080 P4Hc NA NA NA NA NA NA NA ENOG411EIXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: TELO2 interacting protein 1 NA NA NA NA NA NA NA ENOG411EIXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0610200 protein A0A0P0WEM3 A0A0P0WEM3_ORYSJ Os04g0610200 OSNPB_040610200 ENOG411EIXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCR4-associated factor 1 homolog Os04g0684900 protein,OSJNBa0088H09.11 protein (Os04g0684900 protein) (cDNA clone:006-203-G11, full insert sequence) Q0J8W0,Q7XPU5 Q0J8W0_ORYSJ,Q7XPU5_ORYSJ Os04g0684900 Os04g0684900 OSNPB_040684900,Os04g0684900 OsJ_16690 OSJNBa0088H09.11 OSNPB_040684900 ENOG411EIXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EIXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os01g0752100 protein (cDNA clone:001-114-C02, full insert sequence) Q943F5 Q943F5_ORYSJ Os01g0752100 OSNPB_010752100 P0046E05.35 P0435B05.16 ENOG411EIXF CAF1-9,CAF1-11 Q9LXM2,Q9FMS6 CAF1I_ARATH,CAF1K_ARATH Probable CCR4-associated factor 1 homolog 9 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 11 (EC 3.1.13.4) Sensitive to methyl viologen (inducer of oxidative stress); Germination resistant to salt stress-K. Dehesh-2009 FUNCTION: Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity). {ECO:0000250}. 3.1.13.4 32233,32169 Probable CCR4-associated factor 1 homolog 9 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 11 (EC 3.1.13.4) CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; 3'-5' exonuclease activity [GO:0008408]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; defense response to bacterium [GO:0042742]; defense response to insect [GO:0002213]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; 3'-5' exonuclease activity [GO:0008408]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; defense response to bacterium [GO:0042742]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2095715;,locus:2176307; AT3G44260,AT5G22250 CCR4-associated factor NA NA NA NA NA NA NA ENOG411EIXG MEE23 Q93ZA3,O64743,Q9FKU9,Q9FKV0,Q9FKU8,A0A1P8BCJ3,A0A1P8AT94 BBE13_ARATH,BBE15_ARATH,BBE25_ARATH,BBE24_ARATH,BBE26_ARATH,A0A1P8BCJ3_ARATH,A0A1P8AT94_ARATH Berberine bridge enzyme-like 13 (AtBBE-like 13) (EC 1.1.1.194) (EC 1.1.1.195),Berberine bridge enzyme-like 15 (AtBBE-like 15) (EC 1.1.1.194) (EC 1.1.1.195) (Protein EMBRYO SAC DEVELOPMENT ARREST 28) (Protein MATERNAL EFFECT EMBRYO ARREST 23),Berberine bridge enzyme-like 25 (AtBBE-like 25) (EC 1.1.1.-),Berberine bridge enzyme-like 24 (AtBBE-like 24) (EC 1.1.1.-),Berberine bridge enzyme-like 26 (AtBBE-like 26) (EC 1.1.1.-),FAD-binding Berberine family protein DISRUPTION PHENOTYPE: Endosperm development arrest and impaired polar nuclei fusion. {ECO:0000269|PubMed:15634699}. Female gametophyte defective; Embryo defective (inferred)-V. Sundaresan-2005 FUNCTION: Mediates oxidation of cinnamyl alcohol and of p-hydroxylated derivatives of cinnamyl alcohol (i.e. the monolignols p-coumaryl-, coniferyl-, and sinapyl alcohol) to their corresponding aldehydes. Can use cinnamyl alcohol and derivatives, as well as beta-O-glycosylated form of coniferyl alcohol (coniferin) as substrate. {ECO:0000269|PubMed:26037923}.,FUNCTION: Required for endosperm development and polar nuclei fusion (PubMed:15634699). Mediates oxidation of cinnamyl alcohol and of p-hydroxylated derivatives of cinnamyl alcohol (i.e. the monolignols p-coumaryl-, coniferyl-, and sinapyl alcohol) to their corresponding aldehydes. Can use cinnamyl alcohol and derivatives, as well as beta-O-glycosylated form of coniferyl alcohol (coniferin) as substrate (PubMed:26037923). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26037923}. PATHWAY: Phenylpropanoid metabolism. ARA:AT1G30760-MONOMER;,ARA:AT2G34790-MONOMER;,ARA:AT5G44390-MONOMER;,ARA:AT5G44380-MONOMER;,ARA:AT5G44400-MONOMER; 1.1.1.194; 1.1.1.195,1.1.1.- 60192,59647,61483,60616,60345,65279,62339 Berberine bridge enzyme-like 13 (AtBBE-like 13) (EC 1.1.1.194) (EC 1.1.1.195),Berberine bridge enzyme-like 15 (AtBBE-like 15) (EC 1.1.1.194) (EC 1.1.1.195) (Protein EMBRYO SAC DEVELOPMENT ARREST 28) (Protein MATERNAL EFFECT EMBRYO ARREST 23),Berberine bridge enzyme-like 25 (AtBBE-like 25) (EC 1.1.1.-),Berberine bridge enzyme-like 24 (AtBBE-like 24) (EC 1.1.1.-),Berberine bridge enzyme-like 26 (AtBBE-like 26) (EC 1.1.1.-),FAD-binding Berberine family protein cell wall [GO:0005618]; extracellular region [GO:0005576]; cinnamyl-alcohol dehydrogenase activity [GO:0045551]; coniferyl-alcohol dehydrogenase activity [GO:0050268]; flavin adenine dinucleotide binding [GO:0050660]; sinapyl alcohol dehydrogenase activity [GO:0052747],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; cinnamyl-alcohol dehydrogenase activity [GO:0045551]; coniferyl-alcohol dehydrogenase activity [GO:0050268]; flavin adenine dinucleotide binding [GO:0050660]; sinapyl alcohol dehydrogenase activity [GO:0052747]; embryo development ending in seed dormancy [GO:0009793]; polar nucleus fusion [GO:0010197],cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; response to oxidative stress [GO:0006979],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] TISSUE SPECIFICITY: Expressed in sepals and stamen. {ECO:0000269|PubMed:19325888}. locus:2204579;,locus:2044692;,locus:2158730;,locus:2158720;,locus:2158740; AT1G30760,AT2G34790,AT5G44390,AT5G44380,AT5G44400 domain-containing protein NA NA NA NA NA NA NA ENOG411EIXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAP1-like protein NA NA NA NA NA NA NA ENOG411EIXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Os07g0619400 protein (cDNA clone:001-106-C08, full insert sequence),Os07g0619200 protein,Os07g0619200 protein (Fragment),Os03g0395200 protein Q8LHQ5,A3BM90,Q0D4L7,A0A0P0VYA3 Q8LHQ5_ORYSJ,A3BM90_ORYSJ,Q0D4L7_ORYSJ,A0A0P0VYA3_ORYSJ P0560B08.113 Os07g0619400 OSNPB_070619400,Os07g0619200 OsJ_25148 OSNPB_070619200,Os07g0619200 Os07g0619200 OSNPB_070619200,Os03g0395200 OSNPB_030395200 ENOG411EIXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: FBOX Os04g0385000 protein,Os07g0253150 protein,Os02g0509000 protein,Os02g0751700 protein,Os04g0384400 protein,Os04g0384500 protein,Os04g0385100 protein,Os04g0385050 protein A3AT64,B9FWG4,A0A0P0VJD4,A0A0P0VPI0,A0A0P0WA29,A0A0P0W9A1,A0A0N7KIY6,A0A0P0W9E0 A3AT64_ORYSJ,B9FWG4_ORYSJ,A0A0P0VJD4_ORYSJ,A0A0P0VPI0_ORYSJ,A0A0P0WA29_ORYSJ,A0A0P0W9A1_ORYSJ,A0A0N7KIY6_ORYSJ,A0A0P0W9E0_ORYSJ Os04g0385000 OsJ_14549 OSNPB_040385000,Os07g0253150 OsJ_23738 OSNPB_070253150,Os02g0509000 OSNPB_020509000,Os02g0751700 OSNPB_020751700,Os04g0384400 OSNPB_040384400,Os04g0384500 OSNPB_040384500,Os04g0385100 OSNPB_040385100,Os04g0385050 OSNPB_040385050 ENOG411EIXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HEAT repeat containing NA NA NA NA NA NA NA ENOG411EIXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0293100 protein A0A0P0Y9A1 A0A0P0Y9A1_ORYSJ Os12g0293100 OSNPB_120293100 ENOG411EIXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0199500 protein (cDNA, clone: J080009C14, full insert sequence) B7F9G9 B7F9G9_ORYSJ Os03g0199500 OsJ_09796 OSNPB_030199500 ENOG411EIXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0616800 protein,Os03g0673600 protein (Fragment) Q5ZDK1,A0A0P0W1B2 Q5ZDK1_ORYSJ,A0A0P0W1B2_ORYSJ Os01g0616800 OsJ_02615 OSNPB_010616800 P0686E09.21,Os03g0673600 OSNPB_030673600 ENOG411EIXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0307900 protein Q0E1T0 Q0E1T0_ORYSJ Os02g0307900 Os02g0307900 OsJ_06409 OSNPB_020307900 ENOG411EIXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EIX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0242100 protein (Transposon protein, putative, CACTA, En/Spm sub-class, expressed) (cDNA clone:006-212-G04, full insert sequence),Expressed protein (Os10g0452300 protein),Os06g0199000 protein (Putative glycine rich protein),Os10g0451700 protein,Expressed protein (Os10g0452100 protein),Os10g0451500 protein Q2QV63,Q7XDT6,Q69K59,A3C5B2,Q337Q0,A0A0P0XUT3 Q2QV63_ORYSJ,Q7XDT6_ORYSJ,Q69K59_ORYSJ,A3C5B2_ORYSJ,Q337Q0_ORYSJ,A0A0P0XUT3_ORYSJ LOC_Os12g13890 Os12g0242100 OsJ_35694 OSNPB_120242100,Os10g0452300 LOC_Os10g31480 Os10g0452300 OsJ_31740 OSNPB_100452300,Os06g0199000 Os06g0199000 B1172G12.21 OsJ_20462 OSNPB_060199000,Os10g0451700 OsJ_31735 OSNPB_100451700,Os10g0452100 LOC_Os10g31460 OSNPB_100452100,Os10g0451500 OSNPB_100451500 ENOG411EIX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411E7P8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein Os01g0873500 protein A0A0P0VB69 A0A0P0VB69_ORYSJ Os01g0873500 OSNPB_010873500 ENOG411E7P9 RBOHA O81209 RBOHA_ARATH Respiratory burst oxidase homolog protein A (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHA) (AtRBOHA) FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide. ARA:AT5G07390-MONOMER; R-ATH-3299685;R-ATH-6798695; 1.11.1.-; 1.6.3.- 102935 Respiratory burst oxidase homolog protein A (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHA) (AtRBOHA) integral component of membrane [GO:0016021]; intrinsic component of plasma membrane [GO:0031226]; calcium ion binding [GO:0005509]; oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor [GO:0050664]; peroxidase activity [GO:0004601] locus:2183309; AT5G07390 respiratory burst oxidase NA NA NA NA NA NA NA ENOG411E7P2 F4JED3,A0A1I9LNF2 F4JED3_ARATH,A0A1I9LNF2_ARATH RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein,Nuclear transport factor 2/RNA recognition motif protein 76986,31451 RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein,Nuclear transport factor 2/RNA recognition motif protein cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; transport [GO:0006810],signal transduction [GO:0007165] locus:2098555; AT3G07250 Protein of unknown function (DUF1675) NA NA NA NA NA NA NA ENOG411E7P4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411E7P7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7PH Q8LA01 Q8LA01_ARATH At3g22210 (Transmembrane protein) 7777 At3g22210 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2090424; AT3G22210 NA NA NA NA NA NA NA NA ENOG411E7PJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0238800 protein (cDNA clone:001-116-C11, full insert sequence),Os01g0238800 protein (cDNA clone:001-109-B07, full insert sequence) Q9FTU0,Q5NAN6 Q9FTU0_ORYSJ,Q5NAN6_ORYSJ Os01g0238800 OSJNBa0086P08.26-1 OSNPB_010238800,Os01g0238800 OsJ_01045 OSJNBa0086P08.26-2 OSNPB_010238800 ENOG411E7PK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0633100 protein (cDNA clone:002-133-D05, full insert sequence) Q67VL6 Q67VL6_ORYSJ Os06g0633100 OSNPB_060633100 P0505A04.26 ENOG411E7PD TRM31 F4KGA5 F4KGA5_ARATH Uncharacterized protein 42543 Uncharacterized protein locus:2178858; AT5G58630 NA NA NA NA NA NA NA NA ENOG411E7PE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os02g0706400 protein (Putative myb-related protein) (cDNA clone:J023127K17, full insert sequence) Q8S3Q7 Q8S3Q7_ORYSJ 49D11.24 Os02g0706400 OsJ_08088 OSNPB_020706400 ENOG411E7PG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc knuckle (CCHC-type) family protein NA NA NA NA NA NA NA ENOG411E7PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase NA NA NA NA NA NA NA ENOG411E7PY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-methyltransferase NA NA NA NA NA NA NA ENOG411E7PZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Embryo-specific protein 3 (ATS3) NA NA NA NA NA NA NA ENOG411E7PQ GIP2,GIP1 Q9C9T3,Q9M0N8 MZT1A_ARATH,MZT1B_ARATH Mitotic-spindle organizing protein 1A (GCP3-interacting protein 2) (AtGIP2) (Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1A) (AtGIP1A),Mitotic-spindle organizing protein 1B (GCP3-interacting protein 1) (AtGIP1) (Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1B) (AtGIP1B) DISRUPTION PHENOTYPE: In the gip1 gip2 double mutants, embryonic lethality and impaired development of male gametophytes, severe growth defects and sterility, characterized by microtubule (MT) misorganization and abnormal spindle polarity, resulting in ploidy defects. {ECO:0000269|PubMed:22404201, ECO:0000269|PubMed:22427335}. FUNCTION: Required for gamma-tubulin complex recruitment to the centrosome (By similarity). During mitosis, modulates gamma-tubulin complex localization, spindle stability and chromosomal segregation. Necessary for gametophyte development and embryogenesis. {ECO:0000250}. 7359,7835 Mitotic-spindle organizing protein 1A (GCP3-interacting protein 2) (AtGIP2) (Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1A) (AtGIP1A),Mitotic-spindle organizing protein 1B (GCP3-interacting protein 1) (AtGIP1) (Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1B) (AtGIP1B) equatorial microtubule organizing center [GO:0000923]; gamma-tubulin ring complex [GO:0008274]; interphase microtubule organizing center [GO:0031021]; microtubule [GO:0005874]; nuclear envelope [GO:0005635]; phragmoplast [GO:0009524]; spindle [GO:0005819]; gamma-tubulin binding [GO:0043015]; histone binding [GO:0042393]; CENP-A containing nucleosome assembly [GO:0034080]; centromere complex assembly [GO:0034508]; gamma-tubulin complex localization [GO:0033566]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; microtubule nucleation by microtubule organizing center [GO:0051418]; mitotic spindle assembly [GO:0090307],equatorial microtubule organizing center [GO:0000923]; gamma-tubulin complex [GO:0000930]; gamma-tubulin ring complex [GO:0008274]; interphase microtubule organizing center [GO:0031021]; kinetochore [GO:0000776]; kinetochore microtubule [GO:0005828]; mitotic spindle [GO:0072686]; nuclear envelope [GO:0005635]; nuclear outer membrane [GO:0005640]; phragmoplast [GO:0009524]; preprophase band [GO:0009574]; gamma-tubulin binding [GO:0043015]; histone binding [GO:0042393]; CENP-A containing nucleosome assembly [GO:0034080]; centromere complex assembly [GO:0034508]; gamma-tubulin complex localization [GO:0033566]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; microtubule cytoskeleton organization [GO:0000226]; microtubule nucleation by microtubule organizing center [GO:0051418]; mitotic spindle assembly [GO:0090307]; mitotic spindle organization [GO:0007052] TISSUE SPECIFICITY: Mostly expressed in siliques and flowers, and, to a lower extent, in leaves, roots and seedlings, with highest levels in young tissues, meristematic cells, and the vasculature. {ECO:0000269|PubMed:22404201, ECO:0000269|PubMed:22427335}.,TISSUE SPECIFICITY: Mostly expressed in siliques and flowers, and, to a lower extent, in leaves, roots and seedlings, with highest levels in young tissues and meristematic cells, and the vasculature. {ECO:0000269|PubMed:22404201, ECO:0000269|PubMed:22427335}. locus:2027859;,locus:2133687; AT1G73790,AT4G09550 Mitotic-spindle organizing protein Expressed protein (Os03g0435900 protein) (Os11g0368172 protein) (cDNA clone:002-133-D01, full insert sequence),Expressed protein (Os03g0824000 protein) (cDNA clone:002-176-C10, full insert sequence) Q10J33,Q852B7 Q10J33_ORYSJ,Q852B7_ORYSJ Os03g0435900 Os11g0368172 LOC_Os03g32150 Os03g0435900 OsJ_11390 OSNPB_030435900 OSNPB_110368172,OSJNBb0081B07.7 LOC_Os03g60900 Os03g0824000 OSNPB_030824000 ENOG411E7PU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane proteins 14C NA NA NA NA NA NA NA ENOG411E7PV Q8LBZ1 Q8LBZ1_ARATH At5g22875 (Transmembrane protein) 7446 At5g22875 (Transmembrane protein) integral component of membrane [GO:0016021] locus:505006630; AT5G22875 NA OSJNBa0019G23.7 protein (Os04g0165500 protein) (cDNA clone:001-101-C10, full insert sequence) Q7XS60 Q7XS60_ORYSJ Os04g0165500 Os04g0165500 OsJ_13778 OSJNBa0019G23.7 OSNPB_040165500 ENOG411E7PW F3C22_130 Q9LXJ2,A0A1I9LS87 Q9LXJ2_ARATH,A0A1I9LS87_ARATH Ubiquinol--cytochrome-c reductase-like protein (Ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein) (Uncharacterized protein At3g52730),Ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein 8449,9200 Ubiquinol--cytochrome-c reductase-like protein (Ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein) (Uncharacterized protein At3g52730),Ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein membrane [GO:0016020]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; aerobic respiration [GO:0009060]; hydrogen ion transmembrane transport [GO:1902600]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122]; mitochondrial respiratory chain complex III assembly [GO:0034551],mitochondrial respiratory chain complex III [GO:0005750]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122] locus:2083228; AT3G52730 Ubiquinol-cytochrome C reductase Os05g0400400 protein (cDNA clone:001-106-F07, full insert sequence) Q0DIC9 Q0DIC9_ORYSJ Os05g0400400 Os05g0400400 OSNPB_050400400 ENOG411E6YK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0401100 protein A0A0P0W9R2 A0A0P0W9R2_ORYSJ Os04g0401100 OSNPB_040401100 ENOG411E6YI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_32 NA NA NA NA NA NA NA ENOG411E6YN VQ8 Q9CA36 VQ8_ARATH VQ motif-containing protein 8, chloroplastic (AtVQ8) DISRUPTION PHENOTYPE: Pale-green and stunted growth phenotypes. {ECO:0000269|PubMed:22535423}. Seedling lethal (inferred from pigment defect); Albino to pale yellow embryos-D. Meinke-2011 FUNCTION: May be involved in chloroplast development. {ECO:0000305|PubMed:22535423}. 16912 VQ motif-containing protein 8, chloroplastic (AtVQ8) chloroplast [GO:0009507] locus:2201287; AT1G68450 VQ motif NA NA NA NA NA NA NA ENOG411E6YC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os09g0433800 protein (cDNA clone:001-122-B03, full insert sequence) (cDNA clone:J023131I21, full insert sequence) Q69PH9 Q69PH9_ORYSJ Os09g0433800 OJ1081_G10.16 OSNPB_090433800 ENOG411E6YA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 OSJNBa0043A12.18 protein (Os04g0669200 protein) Q7XR67 Q7XR67_ORYSJ Os04g0669200 Os04g0669200 OSJNBa0043A12.18 OSNPB_040669200 ENOG411E6YF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os05g0550600 protein (Putative lipid transfer protein) (cDNA clone:001-120-E03, full insert sequence) (cDNA clone:002-157-B03, full insert sequence) Q6L4G9 Q6L4G9_ORYSJ P0560C03.7 Os05g0550600 OsJ_19454 OSJNBa0079H23.1 OSNPB_050550600 ENOG411E6YZ MJB24.15 Q9LVC4,Q944M0 Q9LVC4_ARATH,Q944M0_ARATH Ras guanine nucleotide exchange factor Q-like protein,AT5g57340/MJB24_15 (Ras guanine nucleotide exchange factor Q-like protein) (Uncharacterized protein At5g57340) 29189,27041 Ras guanine nucleotide exchange factor Q-like protein,AT5g57340/MJB24_15 (Ras guanine nucleotide exchange factor Q-like protein) (Uncharacterized protein At5g57340) locus:2165590; AT5G57340 NA NA NA NA NA NA NA NA ENOG411E6YS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0886500 protein (cDNA, clone: J080013H03, full insert sequence) Q5N8G7 Q5N8G7_ORYSJ Os01g0886500 Os01g0886500 OSNPB_010886500 P0408G07.31 P0434C04.10 ENOG411E6YP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6YW F4IV84 F4IV84_ARATH RPM1-interacting protein 4 (RIN4) family protein 8059 RPM1-interacting protein 4 (RIN4) family protein plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2058284; AT2G04410 Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411E6YT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6Y3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6Y1 F4IFT4,Q6NLE8 F4IFT4_ARATH,Q6NLE8_ARATH Pollen Ole e 1 allergen and extensin family protein,At2g27385 (Pollen Ole e 1 allergen and extensin family protein) 18821,17542 Pollen Ole e 1 allergen and extensin family protein,At2g27385 (Pollen Ole e 1 allergen and extensin family protein) locus:504956084; AT2G27385 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411E6Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411EEA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411EEA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein Sb02g010580 source NA NA NA NA NA NA NA ENOG411EEA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hypothetical protein (DUF2410) NA NA NA NA NA NA NA ENOG411EEA0 Q66GQ2,F4I5B1 Y5162_ARATH,F4I5B1_ARATH Uncharacterized protein At5g41620,Intracellular protein transport protein USO1-like protein 70830,67940 Uncharacterized protein At5g41620,Intracellular protein transport protein USO1-like protein chloroplast [GO:0009507]; plasma membrane [GO:0005886],plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2160477;,locus:2024568; AT5G41620,AT1G64180 Inherit from euNOG: intracellular protein transport protein NA NA NA NA NA NA NA ENOG411EEA3 UMK1 Q8VY84,B3H4S0 KCY1_ARATH,B3H4S0_ARATH Probable UMP-CMP kinase 1 (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK),P-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. {ECO:0000255|HAMAP-Rule:MF_03172}. ARA:GQT-1006-MONOMER;,ARA:AT3G60961-MONOMER; R-ATH-499943; 2.7.4.14 23047,15743 Probable UMP-CMP kinase 1 (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK),P-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cytidylate kinase activity [GO:0004127]; uridylate kinase activity [GO:0009041]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; pyrimidine nucleotide biosynthetic process [GO:0006221],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; nucleobase-containing compound kinase activity [GO:0019205]; nucleobase-containing compound metabolic process [GO:0006139] locus:2101472;,locus:4515103290; AT3G60180,AT3G60961 Adenylate kinase NA NA NA NA NA NA NA ENOG411EEA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os09g0282300 protein,Os09g0282100 protein A0A0P0XKD0,A0A0P0XJI5 A0A0P0XKD0_ORYSJ,A0A0P0XJI5_ORYSJ Os09g0282300 OSNPB_090282300,Os09g0282100 OSNPB_090282100 ENOG411EEA5 IQD25 F4JMV6 F4JMV6_ARATH IQ-domain 25 43341 IQ-domain 25 locus:2119951; AT4G29150 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EEA4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF89 NA NA NA NA NA NA NA ENOG411EEA7 REM3,REM2,REM36 Q8VZQ9,Q3E9T2,A0A1P8B628 REM3_ARATH,REM2_ARATH,A0A1P8B628_ARATH B3 domain-containing protein REM3 (Protein REPRODUCTIVE MERISTEM 3),B3 domain-containing protein REM2 (Protein REPRODUCTIVE MERISTEM 2),Transcriptional factor B3 family protein 55712,55036,45470 B3 domain-containing protein REM3 (Protein REPRODUCTIVE MERISTEM 3),B3 domain-containing protein REM2 (Protein REPRODUCTIVE MERISTEM 2),Transcriptional factor B3 family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2124849;,locus:504955488; AT4G31620,AT4G31615 transcription DNA-dependent NA NA NA NA NA NA NA ENOG411EEA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0655200 protein,NB-ARC domain containing protein, expressed (Os11g0654100 protein) (cDNA, clone: J065175H19, full insert sequence) C7J846,Q2R096 C7J846_ORYSJ,Q2R096_ORYSJ Os11g0655200 OSNPB_110655200,LOC_Os11g43320 Os11g0654100 OsJ_34686 OSNPB_110654100 ENOG411EEAY SAC5 Q8RW97 SAC5_ARATH Phosphoinositide phosphatase SAC5 (AtSAC5) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC5) (Protein SUPPRESSOR OF ACTIN 5) (SAC domain protein 5) FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). {ECO:0000250}. ARA:AT1G17340-MONOMER; R-ATH-1660514;R-ATH-1660516;R-ATH-1660517; 3.1.3.- 89837 Phosphoinositide phosphatase SAC5 (AtSAC5) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC5) (Protein SUPPRESSOR OF ACTIN 5) (SAC domain protein 5) vacuolar membrane [GO:0005774]; phosphoric ester hydrolase activity [GO:0042578]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; vacuole organization [GO:0007033] TISSUE SPECIFICITY: Ubiquitous with a higher level of expression in young seedlings than in other tissues. {ECO:0000269|PubMed:12805586}. locus:2029105; AT1G17340 Phosphoinositide phosphatase family protein NA NA NA NA NA NA NA ENOG411EEAX BRG1,BOI Q9FHE4,O81851,Q9ZUP8 BRG1_ARATH,BOI_ARATH,Q9ZUP8_ARATH BOI-related E3 ubiquitin-protein ligase 1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRG1),E3 ubiquitin-protein ligase BOI (EC 2.3.2.27) (Inhibitor of apoptosis (IAP)-like protein) (AtILP) (Protein BOTRYTIS SUSCEPTIBLE 1 INTERACTOR) (AtBOI) (RING-type E3 ubiquitin transferase BOI),At2g12290 (Uncharacterized protein At2g12290) DISRUPTION PHENOTYPE: No visible phenotype. Decreased resistance to B.cinerea and increased cell death upon pathogen infection. Boi, brg1, brg2 and brg3 quadruple mutant shows a higher GA signaling resulting in a higher seed germination in the presence of paclobutrazol, precocious juvenile-to-adult phase transition and early flowering. {ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23482857}.,DISRUPTION PHENOTYPE: No effect on germination. Boi, brg1, brg2 and brg3 quadruple mutant shows a higher GA signaling resulting in a higher seed germination in the presence of paclobutrazol, precocious juvenile-to-adult phase transition and early flowering. {ECO:0000269|PubMed:23482857}. FUNCTION: E3 ubiquitin-protein ligase involved in regulation of abiotic stress responses. Not involved in ubiquitination of MYB108/BOS1. Has no effect on the stability of the DELLA proteins. {ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23482857}.,FUNCTION: E3 ubiquitin-protein ligase involved in the regulation of pathogen and abiotic stress responses by facilitating degradation of MYB108/BOI. Attenuates cell death by preventing caspase activation. Has no effect on the stability of the DELLA proteins. Not regulated by MYB108/BOI. {ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:21926169, ECO:0000269|PubMed:23482857}. MISCELLANEOUS: Shares anti-apoptotic activity with IAP family proteins. However, it lacks the baculovirus IAP repeat (BIR) domain, which was shown to be essential for anti-apoptotic activity in other IAP family members (PubMed:21926169). {ECO:0000305|PubMed:21926169}. PATHWAY: Protein degradation; proteasomal ubiquitin-dependent pathway. 2.3.2.27 32549,33509,15438 BOI-related E3 ubiquitin-protein ligase 1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRG1),E3 ubiquitin-protein ligase BOI (EC 2.3.2.27) (Inhibitor of apoptosis (IAP)-like protein) (AtILP) (Protein BOTRYTIS SUSCEPTIBLE 1 INTERACTOR) (AtBOI) (RING-type E3 ubiquitin transferase BOI),At2g12290 (Uncharacterized protein At2g12290) metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of programmed cell death [GO:0043067],nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; negative regulation of cysteine-type endopeptidase activity [GO:2000117]; negative regulation of programmed cell death [GO:0043069]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to gibberellin [GO:0009739] TISSUE SPECIFICITY: Expressed in leaves, siliques, roots, flowering tissues and stigma tips. {ECO:0000269|PubMed:20921156}. locus:2153227;,locus:2133990;,locus:2054224; AT5G45100,AT4G19700,AT2G12290 protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411EEAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os11g0573350 protein A0A0P0Y417 A0A0P0Y417_ORYSJ Os11g0573350 OSNPB_110573350 ENOG411EEAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: acetyltransferase NA NA NA NA NA NA NA ENOG411EEAP E2FF Q8RWL0 E2FF_ARATH E2F transcription factor-like E2FF (DP-E2F-like protein 3) (E2F-like repressor E2L2) FUNCTION: Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}. R-ATH-6804116; 39999 E2F transcription factor-like E2FF (DP-E2F-like protein 3) (E2F-like repressor E2L2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell cycle [GO:0007049]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in mid-S phase. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:15308755}. TISSUE SPECIFICITY: High expression in young cotyledons and leaves, hypocotyls, shoot apical meristem, roots and mature pollen grains, moderate in developing trichomes, flowers and at early stages of developing anthers, and barely detectable in mature leaves. Not detected in primary root meristem, emerging lateral roots, pistils, developing embryos and siliques. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}. locus:2100272; AT3G01330 E2F/DP family winged-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EEAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EEAR CRRSP57,CRRSP9,CRRSP7,CRRSP4 Q9FHD5,Q5Q0E2,Q9SH41,Q9CAC7,A0A1P8ARW0 CRR57_ARATH,CRRS9_ARATH,CRRS7_ARATH,CRRS4_ARATH,A0A1P8ARW0_ARATH Cysteine-rich repeat secretory protein 57,Cysteine-rich repeat secretory protein 9,Putative cysteine-rich repeat secretory protein 7,Cysteine-rich repeat secretory protein 4,Receptor-like protein kinase-related family protein 31879,35754,31465,34015,37680 Cysteine-rich repeat secretory protein 57,Cysteine-rich repeat secretory protein 9,Putative cysteine-rich repeat secretory protein 7,Cysteine-rich repeat secretory protein 4,Receptor-like protein kinase-related family protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658],anchored component of membrane [GO:0031225]; extracellular region [GO:0005576],extracellular region [GO:0005576],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2155125;,locus:2031341;,locus:2031311; AT5G41280,AT1G63550,AT1G63570,AT1G63600 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EEAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRA NA NA NA NA NA NA NA ENOG411EEAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EEAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:LACT Os01g0946300 protein A0A0P0VCS2 A0A0P0VCS2_ORYSJ Os01g0946300 OSNPB_010946300 ENOG411EEAV SYP21 Q39233 SYP21_ARATH Syntaxin-21 (AtSYP21) (PEP12 homolog) (AtPEP12) (aPEP12) Complete male gametophyte defective-N. Raikhel-2001 FUNCTION: May function in the docking or fusion of transport vesicles with the prevacuolar membrane. 31061 Syntaxin-21 (AtSYP21) (PEP12 homolog) (AtPEP12) (aPEP12) integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; SNARE complex [GO:0031201]; trans-Golgi network transport vesicle [GO:0030140]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; Golgi to vacuole transport [GO:0006896]; late endosome to vacuole transport [GO:0045324]; protein targeting to vacuole [GO:0006623]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] TISSUE SPECIFICITY: A high level expression is seen in the roots while a low level expression is seen in the leaves. locus:2148960; AT5G16830 syntaxin of plants 21 NA NA NA NA NA NA NA ENOG411EEAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET NA NA NA NA NA NA NA ENOG411EEAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromo (CHRromatin Organisation MOdifier) domain NA NA NA NA NA NA NA ENOG411EEAK F4IXT6,Q945L4 WTR19_ARATH,WTR40_ARATH WAT1-related protein At3g28060,WAT1-related protein At5g40210 23472,36577 WAT1-related protein At3g28060,WAT1-related protein At5g40210 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2091373;,locus:2173737; AT3G28060,AT5G40210 EamA-like transporter family NA NA NA NA NA NA NA ENOG411EEAJ KIN4A Q8GS71 KN4A_ARATH Kinesin-like protein KIN-4A (AtKINESIN-4A) (Protein FRAGILE FIBER 1) DISRUPTION PHENOTYPE: Reduced length of roots and inflorescence stems. Altered orientation of cellulose microfibrils in fiber walls leading to dramatic reduction in fiber mechanical strength. No apparent alteration in cell wall composition. Lower expansion rate of the inflorescence stem along with the reduced thickness of both primary and secondary cell walls leading to mechanically weaker stems (PubMed:25646318). {ECO:0000269|PubMed:12468730, ECO:0000269|PubMed:25600279, ECO:0000269|PubMed:25646318}. FUNCTION: Kinesin-like motor protein involved in the control of the oriented deposition of cellulose microfibrils (PubMed:12468730, Ref.6). Its motor activity is directed toward the microtubule's plus end. It possesses the potential to drive long-distance transport of cargo along cortical microtubules (PubMed:21914648, PubMed:25646318). Regulates cell wall mechanics during cell elongation, by the regulation of primary and secondary walls deposition (Ref.6, PubMed:25600279, PubMed:25646318). Contributes to cortical microtubule-mediated trafficking of cell wall components (PubMed:25646318). {ECO:0000269|PubMed:12468730, ECO:0000269|PubMed:21914648, ECO:0000269|PubMed:25600279, ECO:0000269|PubMed:25646318, ECO:0000269|Ref.6}. MISCELLANEOUS: Overexpression of KIN4A/FRA1 caused a severe reduction in the thickness of secondary walls in interfascicular fibers and deformation of vessels, an increase in the number of secondary wall layers, which are accompanied with a marked decrease in stem strength. {ECO:0000269|Ref.6}. R-ATH-6811434;R-ATH-983189; 116734 Kinesin-like protein KIN-4A (AtKINESIN-4A) (Protein FRAGILE FIBER 1) cortical microtubule [GO:0055028]; cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; cellulose microfibril organization [GO:0010215]; cytoskeleton-dependent intracellular transport [GO:0030705]; microtubule-based movement [GO:0007018]; plant-type cell wall biogenesis [GO:0009832] TISSUE SPECIFICITY: Expressed in stems and flowers (PubMed:12468730). Detected in cells undergoing secondary wall deposition including developing interfascicular fibers and xylem cells, but also in dividing cells and expanding/elongating parenchyma cells (Ref.6). {ECO:0000269|PubMed:12468730, ECO:0000269|Ref.6}. locus:2160912; AT5G47820 KISc Kinesin-like protein KIN-4A (Protein BRITTLE CULM 2) (Protein GIBBERELLIN-DEFICIENT DWARF 1),Kinesin-like protein (Fragment),Os09g0114500 protein (Fragment) Q6YUL8,A0A0P0XKP5,A0A0P0XJW5 KN4A_ORYSJ,A0A0P0XKP5_ORYSJ,A0A0P0XJW5_ORYSJ KIN4A BC2 GDD1 Os09g0114500 LOC_Os09g02650 OJ1134_E08.39-1 OJ1134_E08.39-2 OsJ_28385,Os09g0114500 OSNPB_090114500 DISRUPTION PHENOTYPE: Dwarf plants due to significant reduction in cell number (PubMed:20444225). Dwarf plants due to significant reduction in cell elongation (PubMed:21325138). This phenotype can be rescued by exogenous gibberellic acid (GA3) treatment (PubMed:21325138). Reduced mechanical strength (brittleness) due to an alteration in cellulose microfibril orientation and wall composition (PubMed:20444225). {ECO:0000269|PubMed:20444225, ECO:0000269|PubMed:21325138}. FUNCTION: Microtubule-dependent motor protein involved in the control of the oriented deposition of cellulose microfibrils (PubMed:20444225, PubMed:21325138). Involved in wall biogenesis and modification, and contributes to cell-cycle progression and cell division (PubMed:20444225). Acts as a transcriptional activator in gibberellic acid (GA) biosynthesis pathway. Binds specifically to the DNA sequence 5'-ACCAACTTGAA-3' of the ent-kaurene oxidase 2 (CYP701A6 or OsKO2) promoter. May regulate CYP701A6 gene expression and mediates cell elongation by regulating the GA biosynthesis pathway (PubMed:21325138). {ECO:0000269|PubMed:20444225, ECO:0000269|PubMed:21325138}. ENOG411EEAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Permease family NA NA NA NA NA NA NA ENOG411EEAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EEAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AT_hook NA NA NA NA NA NA NA ENOG411EEAC Q9LUP7,Q9ZNQ3,Q9LUP8,A0A1P8AY04 FB154_ARATH,FBLK3_ARATH,FB153_ARATH,A0A1P8AY04_ARATH Putative F-box protein At3g17500,F-box/LRR-repeat/kelch-repeat protein At2g27520,Putative F-box protein At3g17490,F-box/associated interaction domain protein 45009,40530,46170,12606 Putative F-box protein At3g17500,F-box/LRR-repeat/kelch-repeat protein At2g27520,Putative F-box protein At3g17490,F-box/associated interaction domain protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2038618;,locus:2090507; AT3G17500,AT2G27520,AT3G17490 f-box family NA NA NA NA NA NA NA ENOG411EEAB FRL5 Q5XV31 FRL5_ARATH FRIGIDA-like protein 5 106573 FRIGIDA-like protein 5 cell differentiation [GO:0030154]; flower development [GO:0009908] TISSUE SPECIFICITY: Expressed at low levels during seed development. {ECO:0000269|PubMed:20405310}. locus:2181251; AT5G27230 Frigida-like protein NA NA NA NA NA NA NA ENOG411EEAD Q9LNC2,A0A1P8AV16 PLA18_ARATH,A0A1P8AV16_ARATH Phospholipase A1-IIalpha (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. 3.1.1.- 48123,34766 Phospholipase A1-IIalpha (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein cytoplasm [GO:0005737]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; lipid catabolic process [GO:0016042],phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; lipid metabolic process [GO:0006629] locus:2038505; AT1G06250 lipase class 3 family protein NA NA NA NA NA NA NA ENOG411EEAG O49553 O49553_ARATH At4g21110/F7J7_50 (G10 family protein) (G10-like protein) R-ATH-72163; 17187 At4g21110/F7J7_50 (G10 family protein) (G10-like protein) cytosol [GO:0005829]; spliceosomal complex [GO:0005681]; mRNA splicing, via spliceosome [GO:0000398] locus:2127383; AT4G21110 G10 protein Protein BUD31 homolog 2 (Protein G10 homolog 2),Protein BUD31 homolog 3 (Protein G10 homolog 3),Protein BUD31 homolog 1 (Protein G10 homolog 1),Os04g0646100 protein (Fragment) Q65WT0,P35682,Q94DE2,A0A0P0WFK0 BD31B_ORYSJ,BD31C_ORYSJ,BD31A_ORYSJ,A0A0P0WFK0_ORYSJ Os05g0446300 LOC_Os05g37390 OsJ_18724 P0615D12.15,Os12g0149800 LOC_Os12g05410,Os01g0857700 LOC_Os01g63890 OsJ_004032 P0683F02.14; Os04g0646100 LOC_Os04g55290 OsJ_015680 OSJNBa0070O11.6,Os04g0646100 OSNPB_040646100 ENOG411EEAF F17J16_130 Q9LYS8,Q9SJG1,F4J750 Q9LYS8_ARATH,Q9SJG1_ARATH,F4J750_ARATH AT3g59080/F17J16_130 (Eukaryotic aspartyl protease family protein) (Uncharacterized protein At3g59080) (Uncharacterized protein F17J16_130),Eukaryotic aspartyl protease family protein (Putative chloroplast nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein 59242,58649,55354 AT3g59080/F17J16_130 (Eukaryotic aspartyl protease family protein) (Uncharacterized protein At3g59080) (Uncharacterized protein F17J16_130),Eukaryotic aspartyl protease family protein (Putative chloroplast nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190] locus:2077700;,locus:2045615; AT3G59080,AT2G42980 Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411E39Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Coprinus_mating Homeodomain protein-like (Os02g0465140 protein),Associated with HOX family protein (Os03g0680700 protein) (Putative homeodomain protein) Q6K4W3,Q9AYD8 Q6K4W3_ORYSJ,Q9AYD8_ORYSJ Os02g0465140 Os02g0465140 OSJNBa0035A24.44 OSNPB_020465140,LOC_Os03g47730 Os03g0680700 Os03g47730 OSNPB_030680700 ENOG411E39Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os08g0270800 protein (cDNA clone:001-040-F01, full insert sequence) Q6YX04 Q6YX04_ORYSJ Os08g0270800 Os08g0270800 OsJ_26690 OSJNBa0091D16.14 OSNPB_080270800 ENOG411E39X WDL2 Q9ASW8 WDL2_ARATH Protein WVD2-like 2 FUNCTION: Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. {ECO:0000250|UniProtKB:Q8GYX9}. 37399 Protein WVD2-like 2 cytoplasm [GO:0005737]; microtubule [GO:0005874] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:23653471}. locus:2020048; AT1G54460 Targeting protein for Xklp2 (TPX2) NA NA NA NA NA NA NA ENOG411E39Q Q9LTI4,A0A1P8BAL4 Q9LTI4_ARATH,A0A1P8BAL4_ARATH At5g59460 (Scarecrow-like transcription factor 11 (SCL11)),Scarecrow-like transcription factor 11 (SCL11) 19073,14323 At5g59460 (Scarecrow-like transcription factor 11 (SCL11)),Scarecrow-like transcription factor 11 (SCL11) nuclear exosome (RNase complex) [GO:0000176]; maturation of 5.8S rRNA [GO:0000460] locus:2148313; AT5G59460 NA Os01g0144600 protein (cDNA clone:006-309-E03, full insert sequence) (cDNA clone:J033108P10, full insert sequence) Q5ZBL4 Q5ZBL4_ORYSJ Os01g0144600 Os01g0144600 OsJ_00342 OSNPB_010144600 P0024G09.35 ENOG411E39P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E39W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os11g0599700 protein,RBR-type E3 ubiquitin transferase (EC 2.3.2.31) Q2R1M4,Q69PF5 Q2R1M4_ORYSJ,Q69PF5_ORYSJ Os11g0599700 LOC_Os11g38710 OsJ_34438 OSNPB_110599700,Os09g0434900 OJ1081_G10.31 OJ1238_G07.1 OSNPB_090434900 ENOG411E39V ZHD4 Q9M9S0 ZHD4_ARATH Zinc-finger homeodomain protein 4 (AtZHD4) (Homeobox protein 31) (AtHB-31) (Protein FLORAL TRANSITION AT THE MERISTEM 2) FUNCTION: Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. 35482 Zinc-finger homeodomain protein 4 (AtZHD4) (Homeobox protein 31) (AtHB-31) (Protein FLORAL TRANSITION AT THE MERISTEM 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; long-day photoperiodism, flowering [GO:0048574]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}. TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. locus:2012602; AT1G14440 homeobox protein NA NA NA NA NA NA NA ENOG411E39U IF3-1 Q6NLP2,A0A1P8AU23,A0A1P8AU34 IF31_ARATH,A0A1P8AU23_ARATH,A0A1P8AU34_ARATH Translation initiation factor IF3-1, mitochondrial (AtIF3-1) (AtINFC-1),Translation initiation factor 3 (IF-3) family protein FUNCTION: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. {ECO:0000250|UniProtKB:P0A707}. 58582,56033,51077 Translation initiation factor IF3-1, mitochondrial (AtIF3-1) (AtINFC-1),Translation initiation factor 3 (IF-3) family protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; ribosome disassembly [GO:0032790],translation initiation factor activity [GO:0003743] locus:2036309; AT1G34360 translation Initiation Factor Os02g0101100 protein (Translation initiation factor 3 (IF-3)-like protein) (cDNA clone:J013129P11, full insert sequence) Q6YU95 Q6YU95_ORYSJ Os02g0101100 Os02g0101100 B1370C05.12 OJ1435_F07.2 OsJ_04988 OSNPB_020101100 ENOG411E39T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0010H02.21 protein (Os04g0554300 protein) Q7XT31 Q7XT31_ORYSJ OSJNBa0010H02.21 Os04g0554300 OSNPB_040554300 ENOG411E39K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411E39J MJB24.4 Q9LVD5,A0A1P8BEG6 Q9LVD5_ARATH,A0A1P8BEG6_ARATH At5g57230 (Thioredoxin superfamily protein),Thioredoxin superfamily protein 18842,23276 At5g57230 (Thioredoxin superfamily protein),Thioredoxin superfamily protein locus:2165645; AT5G57230 NA Os06g0482200 protein (cDNA clone:002-157-D11, full insert sequence),Os10g0162834 protein Q67W14,A0A0P0XSM9 Q67W14_ORYSJ,A0A0P0XSM9_ORYSJ Os06g0482200 OsJ_21374 OSJNBa0040M10.15 OSNPB_060482200,Os10g0162834 OSNPB_100162834 ENOG411E39I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA23 (Indoleacetic acid-induced protein 23) Q69VE0 IAA23_ORYSJ IAA23 Os06g0597000 LOC_Os06g39590 OsJ_21866 P0417D05.17-1 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E39H SNRNP25 Q84WS8,A0A1I9LLK7 U1125_ARATH,A0A1I9LLK7_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein (U11/U12 snRNP 25 kDa protein) (U11/U12-25K),Ubiquitin-like superfamily protein R-ATH-72165; 18673,17356 U11/U12 small nuclear ribonucleoprotein 25 kDa protein (U11/U12 snRNP 25 kDa protein) (U11/U12-25K),Ubiquitin-like superfamily protein spliceosomal complex [GO:0005681]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2077447; AT3G07860 U11 U12 small nuclear ribonucleoprotein 25 kDa OSJNBa0084K01.17 protein (Os04g0663500 protein) Q7XM14 Q7XM14_ORYSJ Os04g0663500 OsJ_16518 OSJNBa0084K01.17 OSNPB_040663500 ENOG411E39N F26O13.220 Q9SCZ1,F4J4F8 Q9SCZ1_ARATH,F4J4F8_ARATH At3g51580 (Transmembrane protein) (Uncharacterized protein F26O13.220),Transmembrane protein 42017,44369 At3g51580 (Transmembrane protein) (Uncharacterized protein F26O13.220),Transmembrane protein integral component of membrane [GO:0016021],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:2081825; AT3G51580 NA Os05g0478200 protein (Fragment) A0A0P0WNN0 A0A0P0WNN0_ORYSJ Os05g0478200 OSNPB_050478200 ENOG411E39M Q8GYZ3 Q8GYZ3_ARATH RmlC-like jelly roll fold protein (Uncharacterized protein At1g19130/F14D16_18) 21641 RmlC-like jelly roll fold protein (Uncharacterized protein At1g19130/F14D16_18) cytosol [GO:0005829] locus:2011251; AT1G19130 Cupin superfamily (DUF985) Os08g0455800 protein (cDNA clone:006-311-G01, full insert sequence) (cDNA clone:J023067L05, full insert sequence) Q6Z0R0 Q6Z0R0_ORYSJ Os08g0455800 Os08g0455800 B1144B06.21 OsJ_27555 OSNPB_080455800 ENOG411E39C Q9SGH5,A0A1P8BDM5 Q9SGH5_ARATH,A0A1P8BDM5_ARATH NHL domain protein (T13O15.7 protein) (Uncharacterized protein At3g01430) (Uncharacterized protein At3g01430/T13O15_7),NHL domain protein 20299,19781 NHL domain protein (T13O15.7 protein) (Uncharacterized protein At3g01430) (Uncharacterized protein At3g01430/T13O15_7),NHL domain protein locus:2096702; AT3G01430 NHL repeat-containing protein NHL repeat-containing protein-like (Os02g0743200 protein) (cDNA clone:002-141-F04, full insert sequence) Q6Z2V7 Q6Z2V7_ORYSJ Os02g0743200 Os02g0743200 OJ1734_E02.9 OSNPB_020743200 P0585G03.32 ENOG411E39B BCCP1,CAC1 Q42533,F4KE21 BCCP1_ARATH,F4KE21_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic (AtBCCP1) (BCCP-1),Biotin carboxyl carrier protein of acetyl-CoA carboxylase Embryo defective; Male gametophyte defective-E. Wurtele-2003 FUNCTION: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.,FUNCTION: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. {ECO:0000256|RuleBase:RU364072}. PATHWAY: Lipid metabolism; fatty acid biosynthesis.,PATHWAY: Lipid metabolism; fatty acid biosynthesis. {ECO:0000256|RuleBase:RU364072}. ARA:AT5G16390-MONOMER; 29613,26928 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic (AtBCCP1) (BCCP-1),Biotin carboxyl carrier protein of acetyl-CoA carboxylase acetyl-CoA carboxylase complex [GO:0009317]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; acetyl-CoA carboxylase activity [GO:0003989]; fatty acid biosynthetic process [GO:0006633],acetyl-CoA carboxylase complex [GO:0009317]; chloroplast [GO:0009507]; acetyl-CoA carboxylase activity [GO:0003989]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Present in developing tissues from roots, leaves, flowers, siliques and seeds (at protein level). {ECO:0000269|PubMed:10759501, ECO:0000269|PubMed:11299381}. locus:2171307; AT5G16390 biotin carboxyl carrier protein of acetyl-CoA carboxylase NA NA NA NA NA NA NA ENOG411E39A MMG4.17 A0JQ86,A0A1P8BGJ9 A0JQ86_ARATH,A0A1P8BGJ9_ARATH At5g43140 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein),Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 28915,21202 At5g43140 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein),Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2167816; AT5G43140 PXMP2 4 family protein 4-like NA NA NA NA NA NA NA ENOG411E39G TIM23-1,TIM23-2 Q9LNQ1,Q38820,A0A1P8AV91 TI231_ARATH,TI232_ARATH,A0A1P8AV91_ARATH Mitochondrial import inner membrane translocase subunit TIM23-1,Mitochondrial import inner membrane translocase subunit TIM23-2,Translocase of inner mitochondrial membrane 23 FUNCTION: Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes (By similarity). {ECO:0000250}. 19974,19878,19490 Mitochondrial import inner membrane translocase subunit TIM23-1,Mitochondrial import inner membrane translocase subunit TIM23-2,Translocase of inner mitochondrial membrane 23 integral component of mitochondrial inner membrane [GO:0031305]; mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein channel activity [GO:0015266]; protein import into mitochondrial matrix [GO:0030150]; protein targeting to mitochondrion [GO:0006626],integral component of mitochondrial inner membrane [GO:0031305]; membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrion [GO:0005739]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein channel activity [GO:0015266]; protein import into mitochondrial matrix [GO:0030150],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Peak of expression during cotyledon development. {ECO:0000269|PubMed:12692332}. TISSUE SPECIFICITY: Expressed in roots, flowers, cotyledons and leaves. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}.,TISSUE SPECIFICITY: Expressed in roots and young cotyledons. Detected in leaves and flowers. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}. locus:2007893;,locus:2030260; AT1G17530,AT1G72750 Mitochondrial import inner membrane translocase subunit Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed (Os10g0519700 protein) (Putaive mitochondrial inner membrane protein),Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed (Os03g0114900 protein) (Putative mitochondrial inner membrane protein) (cDNA clone:J033148L11, full insert sequence) Q9FWD5,Q8GZW5 Q9FWD5_ORYSJ,Q8GZW5_ORYSJ Os10g0519700 LOC_Os10g37530 Os10g0519700 OSJNBb0018B10.5 OSNPB_100519700,OSJNBa0090O10.19 LOC_Os03g02390 Os03g0114900 OSNPB_030114900 ENOG411E39F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase III RPC4 Os01g0889200 protein A0A0P0VBC1 A0A0P0VBC1_ORYSJ Os01g0889200 OSNPB_010889200 ENOG411E39E LTPG1 Q9C7F7 LTPG1_ARATH Non-specific lipid transfer protein GPI-anchored 1 (AtLTPG-1) (Protein LTP-GPI-ANCHORED 1) DISRUPTION PHENOTYPE: Reduced cuticular wax load on the stem surface and in silique walls, with altered cuticular lipid composition (especially C29 alkane) associated with diffuse cuticular layer structure. Increased number of plastoglobules in the stem cortex and leaf mesophyll cells, protrusions of the cytoplasm into the vacuole in the epidermis, and enhanced susceptibility to infection by the necrotrophic fungal pathogen Alternaria brassicicola. {ECO:0000269|PubMed:19321705, ECO:0000269|PubMed:19366900, ECO:0000269|PubMed:22891199}. Low cuticular wax levels; Abnormal cuticular wax composition-L. Samuels-2009 FUNCTION: Lipid transfer protein that, together with LTPG2, binds to lipids and functions as a component of the cuticular lipid export machinery that performs extensive export of intracellular lipids (e.g. C29 alkane) from epidermal cells to the surface to build the cuticular wax layer and silique walls. Involved in the establishment of resistance to the necrotrophic fungal pathogen Alternaria brassicicola. {ECO:0000269|PubMed:19321705, ECO:0000269|PubMed:19366900, ECO:0000269|PubMed:22891199}. 19759 Non-specific lipid transfer protein GPI-anchored 1 (AtLTPG-1) (Protein LTP-GPI-ANCHORED 1) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; cuticle development [GO:0042335]; defense response to fungus [GO:0050832]; lipid transport [GO:0006869] DEVELOPMENTAL STAGE: High levels in the aerial portion of 10 days old seedlings. Accumulates in the epidermis during cuticle biosynthesis (e.g. in inflorescence stems). Also detected in flowers, in upper portion of the styles, pollen, veins of the sepals and petals, silique walls and seeds in the early stages of development. In epidermis, present in trichomes, leaf mesophyll cells, and stem cortex and xylem. {ECO:0000269|PubMed:19321705, ECO:0000269|PubMed:19366900}. TISSUE SPECIFICITY: Up-regulated in the epidermis of stems and leaves. Expressed in the epidermis, stem cortex, vascular bundles and mesophyll cells in root tips, seedlings, leaves, caulines, flowers, siliques, pollen, and early-developing seeds. {ECO:0000269|PubMed:16299169, ECO:0000269|PubMed:19321705}. locus:2010479; AT1G27950 glycosylphosphatidylinositol-anchored lipid protein transfer 1 Lipid transfer protein-like (Os08g0532800 protein) (cDNA clone:006-210-D09, full insert sequence) (cDNA clone:J013120P05, full insert sequence),Lipid transfer protein-like (Os08g0532800 protein) (cDNA clone:006-305-A08, full insert sequence) (cDNA clone:006-309-A04, full insert sequence) Q6YZD4,Q6YZD3 Q6YZD4_ORYSJ,Q6YZD3_ORYSJ P0702E04.24-1 Os08g0532800 OsJ_28065 OSNPB_080532800,P0702E04.24-2 Os08g0532800 OSNPB_080532800 ENOG411E39D Q949Z8 Q949Z8_ARATH Transmembrane 50A-like protein (Uncharacterized protein At1g36980) 14959 Transmembrane 50A-like protein (Uncharacterized protein At1g36980) integral component of membrane [GO:0016021] locus:2203089; AT1G36980 transmembrane protein 50A Os09g0453000 protein (cDNA clone:J013132I06, full insert sequence),Os09g0453000 protein (cDNA clone:J023148P12, full insert sequence),Os08g0469200 protein (Fragment) Q67UZ7,Q67UZ6,A0A0N7KPZ9 Q67UZ7_ORYSJ,Q67UZ6_ORYSJ,A0A0N7KPZ9_ORYSJ P0488D02.18-1 Os09g0453000 OSNPB_090453000,P0488D02.18-2 Os09g0453000 OSNPB_090453000,Os08g0469200 OSNPB_080469200 ENOG411E399 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Got1/Sft2-like family Os07g0593400 protein,Os07g0593332 protein (Fragment),Os09g0535600 protein A0A0P0X8J5,A0A0P0X830,A0A0N7KR64 A0A0P0X8J5_ORYSJ,A0A0P0X830_ORYSJ,A0A0N7KR64_ORYSJ Os07g0593400 OSNPB_070593400,Os07g0593332 OSNPB_070593332,Os09g0535600 OSNPB_090535600 ENOG411E398 T1E3_120 Q9LZ21 Q9LZ21_ARATH Duplicated homeodomain-like superfamily protein (I-box binding factor-like protein) (Putative I-box binding factor) (Uncharacterized protein At5g04760) 24407 Duplicated homeodomain-like superfamily protein (I-box binding factor-like protein) (Putative I-box binding factor) (Uncharacterized protein At5g04760) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2175478; AT5G04760 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E393 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0600100 protein A0A0P0WEK2 A0A0P0WEK2_ORYSJ Os04g0600100 OSNPB_040600100 ENOG411E392 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family Os01g0849600 protein (Putative early nodulin ENOD18) (cDNA clone:002-139-G10, full insert sequence) Q8S292 Q8S292_ORYSJ Os01g0849600 Os01g0849600 OsJ_04084 OSNPB_010849600 P0414E03.3 ENOG411E391 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os01g0801901 protein A0A0P0V9D3 A0A0P0V9D3_ORYSJ Os01g0801901 OSNPB_010801901 ENOG411E390 RIN4 Q8GYN5,A0A1I9LMJ4 RIN4_ARATH,A0A1I9LMJ4_ARATH RPM1-interacting protein 4,RPM1 interacting protein 4 FUNCTION: Essential regulator of plant defense, which plays a central role in resistance in case of infection by a pathogen. It is a common target for both type III avirulence proteins from P.syringae (AvrB, AvrRpm1 and AvrRpt2) and for the plant Resistance (R) proteins RPM1 and RPS2. In strains carrying the appropriate R gene for avirulence proteins of the pathogen, its association with avirulence proteins triggers a defense system including the hypersensitive response, which limits the spread of disease. In contrast, in plants lacking appropriate R genes, its association with avirulence proteins of the pathogen impairs the defense system and leads to the pathogen multiplication. {ECO:0000269|PubMed:11955429, ECO:0000269|PubMed:12581526, ECO:0000269|PubMed:12581527}. MISCELLANEOUS: Cleavage after Gly-152 by AvrRpt2 is critical for the release of RIN4 from the membrane and its subsequent proteasome-dependent elimination. 23371,24904 RPM1-interacting protein 4,RPM1 interacting protein 4 endomembrane system [GO:0012505]; extrinsic component of plasma membrane [GO:0019897]; membrane [GO:0016020]; plasma membrane [GO:0005886]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium, incompatible interaction [GO:0009816]; negative regulation of plant-type hypersensitive response [GO:0034051]; plant-type hypersensitive response [GO:0009626]; protein phosphorylation [GO:0006468]; response to molecule of bacterial origin [GO:0002237] locus:2090250; AT3G25070 RPM1-interacting protein Os08g0526400 protein Q0J4A3 Q0J4A3_ORYSJ Os08g0526400 Os08g0526400 OSNPB_080526400 ENOG411E397 NFYB9,NFYB6 Q9SFD8,Q84W66 NFYB9_ARATH,NFYB6_ARATH Nuclear transcription factor Y subunit B-9 (AtNF-YB-9) (Protein LEAFY COTYLEDON 1),Nuclear transcription factor Y subunit B-6 (AtNF-YB-6) (Protein LEAFY COTYLEDON 1-LIKE) DISRUPTION PHENOTYPE: Altered response to blue light (BL) and abscisic acid (ABA). {ECO:0000269|PubMed:17322342}.,DISRUPTION PHENOTYPE: Altered response to abscisic acid (ABA). {ECO:0000269|PubMed:17322342}. Embryo lethal; viviparous embryos with cotyledons partially transformed into leaves; embryos sensitive to abscisic acid; embryos have reduced hypocotyl cotyledons that remain green late in development; reduced protein and lipid bodies with starch being predominant storage product in mutant embryos. Trichomes form on cotyledons after germination; internal cells of cotyledons enlarge vacuolate and resemble leaf mesophyll cells; intercellular spaces are prominant in cotyledons; enlarged shoot apical meristem; stomata are found on surface of cotyledons of mutant embryos; mature seeds are desiccation intolerant however immature seeds can be rescued before silique drying and germinated to produce seedlings. Root apex is active in viviparous seeds; immature mutant embryos germinated prior to desiccation produce plants that appear normal for other characteristics.,somatic embryogenesis ability is very limited in lec1 mutants.,strongly impaired ability to induce somatic embryos in vitro,Most mutant embryos were arrested at transition or heart stage with few reaching torpedo stage. Mutant seeds were desiccation intolerant and germinated poorly even when cultured on agar plates. Embryo defective; Leafy cotyledons-J. Harada-1998 FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Acts as a central regulator of the embryogenesis. Required for the speciation of cotyledon identity and the completion of embryo maturation. Controls seed storage protein genes through the regulation of FUS3 and ABI3. Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000269|PubMed:12578989, ECO:0000269|PubMed:15695450, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9657152}.,FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. 26070,26136 Nuclear transcription factor Y subunit B-9 (AtNF-YB-9) (Protein LEAFY COTYLEDON 1),Nuclear transcription factor Y subunit B-6 (AtNF-YB-6) (Protein LEAFY COTYLEDON 1-LIKE) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; blue light signaling pathway [GO:0009785]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of fatty acid biosynthetic process [GO:0045723]; positive regulation of transcription, DNA-templated [GO:0045893]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; activating transcription factor binding [GO:0033613]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates during seed development in embryo cell types and in endosperm tissue. {ECO:0000269|PubMed:9657152}.,DEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269|PubMed:12509518}. TISSUE SPECIFICITY: Expressed in green siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}.,TISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. locus:2201163;,locus:2169028; AT1G21970,AT5G47670 Nuclear transcription factor Y subunit HAP3 subunit of HAP complex (Leafy cotyledon1) (Os02g0725700 protein) (cDNA clone:002-134-B07, full insert sequence) Q6ZFM9 Q6ZFM9_ORYSJ OsHAP3E Os02g0725700 OJ1124_G07.19 OsJ_08218 OSNPB_020725700 ENOG411E394 Q9LSG5 Q9LSG5_ARATH At2g45250 (At3g25120) (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) 20372 At2g45250 (At3g25120) (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) integral component of membrane [GO:0016021]; protein channel activity [GO:0015266]; protein localization to organelle [GO:0033365] locus:2090300; AT3G25120 mitochondrial import inner membrane translocase subunit Tim17 OSJNBb0006N15.9 protein (Os04g0376100 protein) (cDNA clone:J033098C18, full insert sequence) Q7XMJ0 Q7XMJ0_ORYSJ Os04g0376100 Os04g0376100 OsJ_14491 OSJNBb0006N15.9 OSNPB_040376100 ENOG411DVEQ TRM8,F14P22.240 Q6NQ74,Q9M2F2,F4K2R2,F4K2R4 Q6NQ74_ARATH,Q9M2F2_ARATH,F4K2R2_ARATH,F4K2R4_ARATH At5g26910 (GPI-anchored adhesin-like protein) (Uncharacterized protein At5g26910),GPI-anchored adhesin-like protein (Uncharacterized protein F14P22.240),GPI-anchored adhesin-like protein 94986,91146,94857,70390 At5g26910 (GPI-anchored adhesin-like protein) (Uncharacterized protein At5g26910),GPI-anchored adhesin-like protein (Uncharacterized protein F14P22.240),GPI-anchored adhesin-like protein mitochondrion [GO:0005739],plasma membrane [GO:0005886] locus:2148533;,locus:2076431; AT5G26910,AT3G58650 NA NA NA NA NA NA NA NA ENOG411DVEP O23034 UBA5_ARATH Ubiquitin-like modifier-activating enzyme 5 (Ubiquitin-activating enzyme 5) FUNCTION: E1-like enzyme which activates UFM1. {ECO:0000250}. 47020 Ubiquitin-like modifier-activating enzyme 5 (Ubiquitin-activating enzyme 5) cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; UFM1 activating enzyme activity [GO:0071566]; protein ufmylation [GO:0071569] locus:2207185; AT1G05350 ubiquitin-like modifier-activating enzyme Ubiquitin-like modifier-activating enzyme 5 (Ubiquitin-activating enzyme 5),Os02g0506500 protein Q6K6K7,A0A0N7KFC5 UBA5_ORYSJ,A0A0N7KFC5_ORYSJ Os02g0506500 LOC_Os02g30310 OsJ_06853 P0047E05.15,Os02g0506500 OSNPB_020506500 FUNCTION: E1-like enzyme which activates UFM1. {ECO:0000250}. ENOG411DVER CYP97C1 Q6TBX7 LUT1_ARATH Carotene epsilon-monooxygenase, chloroplastic (EC 1.14.99.45) (Cytochrome P450 97C1) (Protein LUTEIN DEFICIENT 1) DISRUPTION PHENOTYPE: No visible phenotype, but lacks lutein and accumulates high levels of zeinoxanthin and beta, beta-xanthophylls. Triple mutant CYP97C1-BCH1-BCH2 is paler and smaller than wild-type. {ECO:0000269|PubMed:12782726, ECO:0000269|PubMed:14709673, ECO:0000269|PubMed:16890225, ECO:0000269|PubMed:18466360}. In leaves 25% increase in zeinoxanthin levels; 25% and 35% reduction in violaxanthin and lutein respectively; %beta;-Carotene increased by 35%; all in relation to single mutant lut1-2.,In seeds similar amounts of carotenoids relative to lut1 b2. Intermediate compared to Col and Ws parents. Higher levels of lutein compared to lut1 b2.,Level of total carotenoid not significantly different from wild-type.,No visible phenotype.,In leaves the only carotenoids significantly changed in the double mutant were &,In seeds similar amounts of carotenoids relative to lut1 b1. Intermediate compared to Col and Ws parents. Greater levels of individual and total &,Accumulation of intermediate zeinoxanthin and contains 8% of wild type lutein. Leaky mutation.,Double mutants were indistinguishable from bps1 single mutants.,In leaves 80% decrease in lutein content accumulation of monohydroxy xanthophyll &,In seeds lutein content reduced by 30%. No zeinoxanthin accumulation.,20% less total carotenoids on a fresh weight basis compared to wildtype.,Chlorophyll a/b ratio is significantly higher than that of other genotypes.,In leaves: dramatic alteration in carotenoid composition: more than twice the levels of &,In seeds total carotenoid levels 35% lower than that of lut1 b1 and lut1 b2 but lutein still accounts for 80% of total carotenoids. Most &,Smaller and paler than either parental wild-type ecotypes (Col and Ws).,Very rapid initial induction of non-photochemical quenching (NPQ) but NPQ level was greatly reduced compared to wildtype levels and all other genotypes.,Accumulated zeinoxanthin but unlike lut1-1 and lut1-2 lacks lutein.,Completely lacks lutein.,Significant reduction of hydroxylated β-rings xanthophylls.,Virtually lacks lutein and accumulates high levels of zeinoxanthin (&,Accumulates & Low lutein levels; No other phenotypes detected-D. DellaPenna-2004 FUNCTION: Heme-containing cytochrome P450 involved in the biosynthesis of xanthophylls. Specific for epsilon- and beta-ring hydroxylation of alpha-carotene. Has only a low activity toward the beta-rings of beta-carotene. The preferred substrate in planta is not alpha-carotene but the epsilon-ring of zeinoxanthin. {ECO:0000269|PubMed:12782726, ECO:0000269|PubMed:16890225, ECO:0000269|PubMed:19147649, ECO:0000269|PubMed:19939422}. ARA:AT3G53130-MONOMER;MetaCyc:AT3G53130-MONOMER; 1.14.99.45; 1.14.99.45 60555 Carotene epsilon-monooxygenase, chloroplastic (EC 1.14.99.45) (Cytochrome P450 97C1) (Protein LUTEIN DEFICIENT 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; zeinoxanthin epsilon hydroxylase activity [GO:0009974]; carotenoid biosynthetic process [GO:0016117] locus:2102023; AT3G53130 cytochrome P450 Cytochrome P450 family protein, expressed (Os10g0546600 protein) (cDNA clone:J013039G17, full insert sequence) Q336V3 Q336V3_ORYSJ LOC_Os10g39930 Os10g0546600 OsJ_32354 OSNPB_100546600 ENOG411DVEU LPXD2,LPXD1,LpxD1 F4JIP6,F4JGP6,A0A1P8B4E8,A0A1P8B4F5 LPXD2_ARATH,LPXD1_ARATH,A0A1P8B4E8_ARATH,A0A1P8B4F5_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial (EC 2.3.1.-) (Protein LIPID X D2) (AtLpxD2),Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial (EC 2.3.1.-) (Protein LIPID X D1) (AtLpxD1),Trimeric LpxA-like enzymes superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants lacking LPXD2 do not accumulate 2,3-diacylglucosamine-1-phosphate. {ECO:0000269|PubMed:21709257}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants lacking LPXD1 accumulate very low levels of 2,3-diacylglucosamine-1-phosphate. {ECO:0000269|PubMed:21709257}. FUNCTION: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses. {ECO:0000303|PubMed:21709257}.,FUNCTION: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses. {ECO:0000305}. PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 3/6. {ECO:0000269|PubMed:21709257}. 2.3.1.191; 2.3.1.- 32331,35708,33452,31369 Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial (EC 2.3.1.-) (Protein LIPID X D2) (AtLpxD2),Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial (EC 2.3.1.-) (Protein LIPID X D1) (AtLpxD1),Trimeric LpxA-like enzymes superfamily protein mitochondrion [GO:0005739]; N-acyltransferase activity [GO:0016410]; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase activity [GO:0043764]; lipid A biosynthetic process [GO:0009245]; lipid X metabolic process [GO:2001289],N-acyltransferase activity [GO:0016410]; lipid A biosynthetic process [GO:0009245] locus:2127423;,locus:2115743; AT4G21220,AT4G05210 Involved in the biosynthesis of lipid A a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the N-acylation of UDP-3-O-(hydroxymyristoyl)glucosamine using 3- hydroxymyristoyl-ACP as the acyl donor. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and or chloroplasts or may be involved in signal transduction or plant defense responses (Potential) Os07g0134400 protein A0A0P0X294 A0A0P0X294_ORYSJ Os07g0134400 OSNPB_070134400 ENOG411DVET F4J550,F4J549 F4J550_ARATH,F4J549_ARATH ARM repeat superfamily protein 121353,121631 ARM repeat superfamily protein nucleus [GO:0005634]; Ran GTPase binding [GO:0008536]; intracellular protein transport [GO:0006886],cytosol [GO:0005829]; nuclear envelope [GO:0005635]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; transcription factor import into nucleus [GO:0042991] locus:2089005; AT3G17340 NA Expressed protein (Os11g0695900 protein),Os11g0693900 protein (Fragment) Q2QZ88,A0A0P0Y5I2 Q2QZ88_ORYSJ,A0A0P0Y5I2_ORYSJ Os11g0695900 LOC_Os11g47320 OSNPB_110695900,Os11g0693900 OSNPB_110693900 ENOG411DVEW KPR Q84JL2,Q9LPL5,F4KIN4,A0A1P8AMS6,A0A1P8AMS1,A0A1P8AMW2,A0A1P8BEI9,A0A1P8AMS4,A0A1P8BEJ4,F4KCJ8 ODBA2_ARATH,ODBA1_ARATH,PANE_ARATH,A0A1P8AMS6_ARATH,A0A1P8AMS1_ARATH,A0A1P8AMW2_ARATH,A0A1P8BEI9_ARATH,A0A1P8AMS4_ARATH,A0A1P8BEJ4_ARATH,F4KCJ8_ARATH 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDE1A) (BCKDH E1-alpha),2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDE1A) (BCKDH E1-alpha),Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169) (Ketopantoate reductase) (KPA reductase),Thiamin diphosphate-binding fold (THDP-binding) superfamily protein FUNCTION: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}.,FUNCTION: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required during sugar starvation. {ECO:0000250, ECO:0000269|PubMed:11418132}.,FUNCTION: Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. {ECO:0000250}. MISCELLANEOUS: Bound potassium ions stabilize the protein structure. {ECO:0000250}. PATHWAY: Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 2/2. ARA:AT5G09300-MONOMER;,ARA:AT1G21400-MONOMER; R-ATH-70895; 1.2.4.4,1.1.1.169 53214,53488,41601,43133,59377,44972,38107,40900,40005,45221 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDE1A) (BCKDH E1-alpha),2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDE1A) (BCKDH E1-alpha),Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169) (Ketopantoate reductase) (KPA reductase),Thiamin diphosphate-binding fold (THDP-binding) superfamily protein mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity [GO:0003863]; metal ion binding [GO:0046872],mitochondrial matrix [GO:0005759]; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity [GO:0003863]; metal ion binding [GO:0046872]; cellular response to sucrose starvation [GO:0043617]; response to absence of light [GO:0009646]; response to sucrose [GO:0009744],2-dehydropantoate 2-reductase activity [GO:0008677]; oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [GO:0016624]; pantothenate biosynthetic process [GO:0015940],oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [GO:0016624],integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [GO:0016624] locus:2184702;,locus:2027072;,locus:2184501; AT5G09300,AT1G21400,AT5G34780 2-oxoisovalerate dehydrogenase subunit alpha 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial, putative, expressed (Os12g0183100 protein),Os12g0183100 protein Q2QWT8,A0A0P0Y7X2,A0A0P0Y7U2 Q2QWT8_ORYSJ,A0A0P0Y7X2_ORYSJ,A0A0P0Y7U2_ORYSJ Os12g0183100 LOC_Os12g08260 Os12g0183100 OSNPB_120183100,Os12g0183100 OSNPB_120183100 ENOG411DVEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3326) Os01g0127400 protein A0A0P0UXK0 A0A0P0UXK0_ORYSJ Os01g0127400 OSNPB_010127400 ENOG411DVEY PDE247 Q9MA50 PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750, chloroplastic (Protein PIGMENT DEFECTIVE 247) Seedling lethal (inferred from pigment defect)-D. Meinke-2002 55778 Pentatricopeptide repeat-containing protein At1g05750, chloroplastic (Protein PIGMENT DEFECTIVE 247) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2198678; AT1G05750 Pentatricopeptide repeat-containing protein At1g05750 Os02g0769900 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os02g0769900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J023139G21, full insert sequence),Os02g0769900 protein (Fragment) Q6ZH57,Q6ZH58,A0A0P0VPX7 Q6ZH57_ORYSJ,Q6ZH58_ORYSJ,A0A0P0VPX7_ORYSJ OJ1079_F11.25-2 Os02g0769900 OSNPB_020769900,OJ1079_F11.25-1 Os02g0769900 OSNPB_020769900,Os02g0769900 OSNPB_020769900 ENOG411DVEX Q9SSR2,Q9LW08 Q9SSR2_ARATH,Q9LW08_ARATH Signal peptidase I (EC 3.4.21.89) 3.4.21.89 20022,19846 Signal peptidase I (EC 3.4.21.89) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; signal peptide processing [GO:0006465],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; signal peptidase complex [GO:0005787]; vacuolar membrane [GO:0005774]; peptidase activity [GO:0008233]; signal peptide processing [GO:0006465] locus:2035139;,locus:2093202; AT1G52600,AT3G15710 Signal peptidase Signal peptidase I (EC 3.4.21.89) Q5VN14,Q0DJD8 Q5VN14_ORYSJ,Q0DJD8_ORYSJ Os06g0273800 Os06g0273800 OSNPB_060273800 P0676F10.11,Os05g0297900 Os05g0297900 OsJ_17942 OSNPB_050297900 ENOG411DVEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dual specificity protein phosphatase Dual specificity phosphatase, catalytic domain containing protein, expressed (Os11g0136800 protein) (cDNA clone:001-120-E08, full insert sequence),Dual specificity phosphatase, catalytic domain containing protein, expressed (Os12g0133700 protein),Os11g0136800 protein Q2RAU9,Q2QY35,A0A0P0XYQ5 Q2RAU9_ORYSJ,Q2QY35_ORYSJ,A0A0P0XYQ5_ORYSJ Os11g0136800 LOC_Os11g04180 Os11g0136800 OsJ_32877 OSNPB_110136800,LOC_Os12g03990 Os12g0133700 OsJ_32886 OSNPB_120133700,Os11g0136800 OSNPB_110136800 ENOG411DVEA STP7 O04249 STP7_ARATH Sugar transport protein 7 (Hexose transporter 7) FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}. 55829 Sugar transport protein 7 (Hexose transporter 7) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] locus:2132213; AT4G02050 sugar transport protein Os09g0416200 protein (Putative glucose transporter) (cDNA clone:J013037F14, full insert sequence) Q6EQ14 Q6EQ14_ORYSJ Os09g0416200 Os09g0416200 OsJ_29366 OSNPB_090416200 P0014G10.11 P0707C02.31 ENOG411DVEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os07g0414000 protein (Fragment) A0A0P0X534 A0A0P0X534_ORYSJ Os07g0414000 OSNPB_070414000 ENOG411DVEB UMAMIT22 Q6NMB7,F4ICR6 WTR7_ARATH,F4ICR6_ARATH WAT1-related protein At1g43650,WAT1-related protein 37715,29300 WAT1-related protein At1g43650,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2031144; AT1G43650 auxin-induced protein 5NG4-like NA NA NA NA NA NA NA ENOG411DVEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR_CC Os06g0605900 protein (Putative F-box protein Fbl2) (cDNA clone:J013002A13, full insert sequence),Os06g0605900 protein (Fragment) Q69X07,Q0DB36 Q69X07_ORYSJ,Q0DB36_ORYSJ Os06g0605900 OSNPB_060605900 P0481H08.34,Os06g0605900 Os06g0605900 OSNPB_060605900 ENOG411DVED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os05g0139200 protein,Os05g0139300 protein Q6AT89,A0A0P0WHR0 Q6AT89_ORYSJ,A0A0P0WHR0_ORYSJ Os05g0139200 OSJNBa0069I13.10 OSJNBb0111O13.3 OSNPB_050139200,Os05g0139300 OSNPB_050139300 ENOG411DVEG AIP1-1,AIP1-2 Q9ZU34,Q9LV35 AIP11_ARATH,AIP12_ARATH Actin-interacting protein 1-1,Actin-interacting protein 1-2 FUNCTION: Binds actin. Enhances the F-actin depolymerization activity of actin-depolymerizing factor (ADF) proteins. {ECO:0000269|PubMed:12417710}.,FUNCTION: Binds actin. Enhances the F-actin depolymerization activity of actin-depolymerizing factor (ADF) proteins. {ECO:0000250|UniProtKB:Q9ZU34}. R-ATH-114608; 66387,66041 Actin-interacting protein 1-1,Actin-interacting protein 1-2 actomyosin, actin portion [GO:0042643]; cortical actin cytoskeleton [GO:0030864]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; actin filament binding [GO:0051015]; actin filament depolymerization [GO:0030042]; positive regulation of actin filament depolymerization [GO:0030836],actomyosin, actin portion [GO:0042643]; cortical actin cytoskeleton [GO:0030864]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; actin filament binding [GO:0051015]; actin filament depolymerization [GO:0030042]; positive regulation of actin filament depolymerization [GO:0030836] TISSUE SPECIFICITY: Expressed in flower buds and flowers. {ECO:0000269|PubMed:12417710}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flower buds and flowers. {ECO:0000269|PubMed:12417710}. locus:2038761;,locus:2092742; AT2G01330,AT3G18060 66 kDa stress Os01g0125800 protein (Putative 66 kDa stress protein) (Putative WD40-repeat protein) Q9AWU6 Q9AWU6_ORYSJ P0044F08.16 Os01g0125800 OsJ_00210 OSNPB_010125800 P0037C04.35 ENOG411DVEI MNL12.14 F4K5Y6,A0A1P8BFE3,F4K5Y5,F4K5Y4 F4K5Y6_ARATH,A0A1P8BFE3_ARATH,F4K5Y5_ARATH,F4K5Y4_ARATH COP1-interacting protein-like protein 128832,114524,137395,130646 COP1-interacting protein-like protein membrane [GO:0016020]; plasma membrane [GO:0005886] locus:2169288; AT5G43310 expressed protein Expressed protein (Os03g0861100 protein) (cDNA clone:J023115B06, full insert sequence),COP1-interacting protein 7 (CIP7)-like protein (Os07g0445600 protein),Os07g0445600 protein Q10A91,Q7XI09,A0A0P0X5T8 Q10A91_ORYSJ,Q7XI09_ORYSJ,A0A0P0X5T8_ORYSJ LOC_Os03g64320 Os03g0861100 OSNPB_030861100,P0030H06.103-1 P0011H01.40-1 Os07g0445600 OSNPB_070445600,Os07g0445600 OSNPB_070445600 ENOG411DVEK PAO4 Q8H191 PAO4_ARATH Probable polyamine oxidase 4 (AtPAO4) (EC 1.5.3.16) (Amine oxidase 2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18703589}. FUNCTION: Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine. No activity detected when spermidine, putrescine or N(1)-acetylspermine are used as substrates. ARA:AT1G65840-MONOMER;MetaCyc:AT1G65840-MONOMER; 1.5.3.16; 1.5.3.16 54931 Probable polyamine oxidase 4 (AtPAO4) (EC 1.5.3.16) (Amine oxidase 2) peroxisome [GO:0005777]; N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity [GO:0052895]; norspermine:oxygen oxidoreductase activity [GO:0052894]; polyamine oxidase activity [GO:0046592]; spermine:oxygen oxidoreductase (spermidine-forming) activity [GO:0052901]; polyamine catabolic process [GO:0006598] TISSUE SPECIFICITY: Highly expressed in roots, flowers and greening cotelydons. Lower expression in other tissues. {ECO:0000269|PubMed:18703589}. locus:2018571; AT1G65840 Polyamine oxidase OSJNBa0043A12.39 protein (Os04g0671200 protein),Os04g0671300 protein (cDNA clone:J023083K01, full insert sequence),Os04g0623300 protein (Fragment),Os04g0671200 protein (Fragment) Q7XR46,Q0J954,A0A0P0WF81,A0A0P0WGE8 Q7XR46_ORYSJ,Q0J954_ORYSJ,A0A0P0WF81_ORYSJ,A0A0P0WGE8_ORYSJ Os04g0671200 Os04g0671200 OsJ_16578 OSJNBa0043A12.39 OSNPB_040671200,Os04g0671300 Os04g0671300 OsJ_16579 OSNPB_040671300,Os04g0623300 OSNPB_040623300,Os04g0671200 OSNPB_040671200 ENOG411DVEM PPI1 O23144,A0A1P8B6C5 PPI1_ARATH,A0A1P8B6C5_ARATH Proton pump-interactor 1,Proton pump interactor 1 FUNCTION: Promotes AHA1 plasma membrane ATPase activity by binding to a site different from the 14-3-3 binding site. {ECO:0000269|PubMed:12182706, ECO:0000269|PubMed:16279950}. 68879,60067 Proton pump-interactor 1,Proton pump interactor 1 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; regulation of proton transport [GO:0010155],endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; regulation of proton transport [GO:0010155] TISSUE SPECIFICITY: Strongly expressed in root and shoot vascular systems, particularly in meristematic and sink tissues. Also present in pollen, stigmas and siliques, but not in developing embryos. {ECO:0000269|PubMed:18304198}. locus:2124019; AT4G27500 proton pump interactor Proton pump-interactor BIP131 (BRI1-interacting protein 131),Proton pump-interactor BIP103 (BRI1-interacting protein 103),Os09g0346400 protein (Fragment) Q6ZBF6,Q762B4,A0A0N7KQM2 BP131_ORYSJ,BP103_ORYSJ,A0A0N7KQM2_ORYSJ BIP131 Os08g0390000 LOC_Os08g30060 OsJ_27178 P0671F11.9,BIP103 Os09g0346400 LOC_Os09g17730 OSJNBb0085I16.34-1 P0512H04.3-1,Os09g0346400 OSNPB_090346400 FUNCTION: May regulate plasma membrane ATPase activity. {ECO:0000250|UniProtKB:O23144}. ENOG411DVEN Q9C7X6 Q9C7X6_ARATH Antigenic heat-stable protein (Uncharacterized protein F13N6.17) 20420 Antigenic heat-stable protein (Uncharacterized protein F13N6.17) locus:2010758; AT1G56420 NA Expressed protein (Os12g0560600 protein) Q2QNM2 Q2QNM2_ORYSJ LOC_Os12g37390 Os12g0560600 OsJ_36506 OSNPB_120560600 ENOG411DVE0 Q8VYZ8,A0A1P8AQY1 Q8VYZ8_ARATH,A0A1P8AQY1_ARATH Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein At1g64430),Pentatricopeptide repeat (PPR) superfamily protein 61621,53039 Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein At1g64430),Pentatricopeptide repeat (PPR) superfamily protein locus:2014220; AT1G64430 NA Os08g0332700 protein (cDNA clone:J013091B08, full insert sequence),Os08g0332700 protein Q6YTR3,Q6YTR2,A0A0P0XEQ0,A0A0P0XES4 Q6YTR3_ORYSJ,Q6YTR2_ORYSJ,A0A0P0XEQ0_ORYSJ,A0A0P0XES4_ORYSJ OJ1224_G08.19-1 Os08g0332700 OSJNBa0030G18.2-1 OSNPB_080332700,OJ1224_G08.19-2 Os08g0332700 OSJNBa0030G18.2-2 OSNPB_080332700,Os08g0332700 OSNPB_080332700 ENOG411DVE3 SMXL4,SMXL5,SMAX1-like 4 Q9SZR3,Q9LU73,A0A1P8B592 SMXL4_ARATH,SMXL5_ARATH,A0A1P8B592_ARATH Protein SMAX1-LIKE 4 (AtSMXL4) (Protein HEAT SHOCK PROTEIN-RELATED) (AtHSPR) (EC 3.6.3.-),Protein SMAX1-LIKE 5 (AtSMXL5),Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: Reduced drought tolerance and hypersensitivity to salt stress, resulting in poor growth in normal soil. {ECO:0000269|PubMed:26603028}. FUNCTION: Probable component of a transcriptional corepressor complex involved in salt tolerance through modulation of reactive oxygen species levels, abscisic acid-dependent stomatal closure, photosynthesis and K(+) /Na(+) homeostasis (PubMed:26603028). Has an in vitro ATPase activity (PubMed:26603028). {ECO:0000269|PubMed:26603028}.,FUNCTION: May function in a transcriptional corepressor complex. {ECO:0000250|UniProtKB:Q9FHH2}. 3.6.3.- 113784,115218,114066 Protein SMAX1-LIKE 4 (AtSMXL4) (Protein HEAT SHOCK PROTEIN-RELATED) (AtHSPR) (EC 3.6.3.-),Protein SMAX1-LIKE 5 (AtSMXL5),Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein chloroplast [GO:0009507]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; carbohydrate homeostasis [GO:0033500]; phloem transport [GO:0010233]; protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],carbohydrate homeostasis [GO:0033500]; phloem transport [GO:0010233]; protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],hydrolase activity [GO:0016787]; protein metabolic process [GO:0019538] TISSUE SPECIFICITY: Detected in seedlings and roots (PubMed:23893171). Expressed specifically in vascular tissues (PubMed:24675528). Expressed in flowers, stems, siliques, leaves and roots, with the highest expression in open flowers and the lowest in leaves (PubMed:26603028). {ECO:0000269|PubMed:23893171, ECO:0000269|PubMed:24675528, ECO:0000269|PubMed:26603028}.,TISSUE SPECIFICITY: Detected in roots, seedlings and axillary branches. {ECO:0000269|PubMed:23893171}. locus:2123944;,locus:2175589; AT4G29920,AT5G57130 heat shock OSJNBa0035B13.5 protein (Os04g0298700 protein) (cDNA, clone: J100058K15, full insert sequence) Q7XVU6 Q7XVU6_ORYSJ OSJNBa0035B13.5 Os04g0298700 OSNPB_040298700 ENOG411DVE2 IRE3,IRE4,IRE,IREH1 F4HYG2,F4HPN2,Q9LE81,F4J6F6,A0A1P8AVQ0,F4HPN1 IRE3_ARATH,IRE4_ARATH,IRE_ARATH,IREH1_ARATH,A0A1P8AVQ0_ARATH,F4HPN1_ARATH Probable serine/threonine protein kinase IRE3 (AtIRE3) (EC 2.7.11.1),Probable serine/threonine protein kinase IRE4 (AtIRE4) (EC 2.7.11.1),Probable serine/threonine protein kinase IRE (EC 2.7.11.1) (Protein INCOMPLETE ROOT HAIR ELONGATION) (AtIRE),Probable serine/threonine protein kinase IREH1 (EC 2.7.11.1) (Protein IRE homolog 1) (AtIREH1),Protein kinase superfamily protein DISRUPTION PHENOTYPE: Reduced root hair length. {ECO:0000269|PubMed:12000677}. Short root hairs-K. Okada-2002 FUNCTION: Modulates root tip growth. May play a common role in the tip growth of plant cells. {ECO:0000269|PubMed:12000677}.,FUNCTION: May be involved in root hair elongation. {ECO:0000303|PubMed:12000677}. 2.7.11.1 137349,117997,130147,143792,137420,120312 Probable serine/threonine protein kinase IRE3 (AtIRE3) (EC 2.7.11.1),Probable serine/threonine protein kinase IRE4 (AtIRE4) (EC 2.7.11.1),Probable serine/threonine protein kinase IRE (EC 2.7.11.1) (Protein INCOMPLETE ROOT HAIR ELONGATION) (AtIRE),Probable serine/threonine protein kinase IREH1 (EC 2.7.11.1) (Protein IRE homolog 1) (AtIREH1),Protein kinase superfamily protein intracellular [GO:0005622]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105],intracellular [GO:0005622]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105],intracellular [GO:0005622]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; regulation of growth [GO:0040008]; unidimensional cell growth [GO:0009826],cytosol [GO:0005829]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of growth [GO:0040008],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Highly expressed in roots, elongating root hair cells and pollen grains. {ECO:0000269|PubMed:12000677}. locus:2198012;,locus:2167953;,locus:2088515;,locus:2028285; AT1G48490,AT1G45160,AT5G62310,AT3G17850 S_TKc Incomplete root hair elongation, putative, expressed (Os12g0621500 protein),Os05g0138766 protein,Os03g0711800 protein (Protein kinase, putative, expressed),Os03g0711800 protein (Fragment) Q2QM12,B9FGY2,Q10E10,A0A0P0W318,A0A0P0W232 Q2QM12_ORYSJ,B9FGY2_ORYSJ,Q10E10_ORYSJ,A0A0P0W318_ORYSJ,A0A0P0W232_ORYSJ LOC_Os12g42660 Os12g0621500 OSNPB_120621500,Os05g0138766 OsJ_17048 OSNPB_050138766,Os03g0711800 LOC_Os03g50390 Os03g0711800 OSNPB_030711800,Os03g0711800 OSNPB_030711800 ENOG411DVE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidate cytidylyltransferase NA NA NA NA NA NA NA ENOG411DVE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caffeoyl-coa o-methyltransferase Tricin synthase 1 (EC 2.1.1.175) (Caffeoyl-CoA 3-O-methyltransferase ROMT15) Q9XGP7 OMT15_ORYSJ ROMT-15 COA20 Os08g0498100 LOC_Os08g38900 OsJ_27813 P0026F07.24 FUNCTION: Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl-CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme. {ECO:0000269|PubMed:17943312}. ENOG411DVE8 TBR,TBL1 Q9FG35,Q9LHL6 TBR_ARATH,TBL1_ARATH Protein trichome birefringence,Protein trichome birefringence-like 1 Short inflorescence stems; Short hypocotyl in the dark-W. Scheible-2010 FUNCTION: Required during cellulose deposition. May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins or maybe in the specific O-acetylation of cell wall polymers. {ECO:0000269|PubMed:20657172}.,FUNCTION: May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins or maybe in the specific O-acetylation of cell wall polymers (By similarity). Can complement TBR and is therefore functionally equivalent, but may work in different tissue. {ECO:0000250, ECO:0000269|PubMed:20388664, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases (PubMed:20657172). Tbr mutants are lacking leaf and stem trichome birefringence characteristic of plant cells that contain highly ordered cellulose in their secondary walls (PubMed:20388664). {ECO:0000305|PubMed:20388664, ECO:0000305|PubMed:20657172}.,MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 67925,63005 Protein trichome birefringence,Protein trichome birefringence-like 1 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; O-acetyltransferase activity [GO:0016413]; cellulose biosynthetic process [GO:0030244]; pectin biosynthetic process [GO:0045489]; plant-type cell wall modification [GO:0009827],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554]; cellulose biosynthetic process [GO:0030244] TISSUE SPECIFICITY: Expressed in leaf vasculature, growing part of the root, expanding inflorescence stems and trichomes. {ECO:0000269|PubMed:20388664}.,TISSUE SPECIFICITY: Not expressed in trichomes. {ECO:0000269|PubMed:20388664}. locus:2170184;,locus:2088659; AT5G06700,AT3G12060 Pfam:DUF231 Os06g0207500 protein (Fragment),Os02g0773732 protein (cDNA, clone: J100048E11, full insert sequence) Q0DDQ9,Q6Z7L5,A0A0P0WU98,A0A0P0WU75 Q0DDQ9_ORYSJ,Q6Z7L5_ORYSJ,A0A0P0WU98_ORYSJ,A0A0P0WU75_ORYSJ Os06g0207500 Os06g0207500 OSNPB_060207500,Os02g0773732 OJ1448_G06.4 OJ1611_C08.32 OsJ_08560 OSNPB_020773732,Os06g0207500 OSNPB_060207500 ENOG411E6C8 Q29Q00,Q9SIJ6,Q9M9W2 Q29Q00_ARATH,Q9SIJ6_ARATH,Q9M9W2_ARATH At4g39235,Marker for oxidative stress response protein (Uncharacterized protein At2g21640),At3g05570 (Dipeptide transport ATP-binding protein) (F18C1.16 protein) 9677,11696,10037 At4g39235,Marker for oxidative stress response protein (Uncharacterized protein At2g21640),At3g05570 (Dipeptide transport ATP-binding protein) (F18C1.16 protein) mitochondrion [GO:0005739]; response to oxidative stress [GO:0006979],ATP binding [GO:0005524] locus:505006569;,locus:2049384;,locus:2078097; AT4G39235,AT2G21640,AT3G05570 NA Os03g0724500 protein (Fragment),Os08g0204632 protein (Fragment) A0A0P0W2D1,A0A0P0XCU0 A0A0P0W2D1_ORYSJ,A0A0P0XCU0_ORYSJ Os03g0724500 OSNPB_030724500,Os08g0204632 OSNPB_080204632 ENOG411E6C9 Q8L9K4 Q8L9K4_ARATH At4g33800 19426 At4g33800 cytokinin metabolic process [GO:0009690] locus:2134288; AT4G33800 NA NA NA NA NA NA NA NA ENOG411E6C0 WPP2,WPP1,WPP3 Q9C500,Q9FMH6,Q0WQ91 WPP2_ARATH,WPP1_ARATH,WPP3_ARATH WPP domain-containing protein 2 (MFP1 attachment factor 2),WPP domain-containing protein 1 (MFP1 attachment factor 1),WPP domain-containing protein 3 (MFP1 attachment factor 3) FUNCTION: Regulates the mitotic activity in roots. Plays a role with HSP70-1 in facilitating WIT1 nuclear envelope targeting. {ECO:0000269|PubMed:15548735, ECO:0000269|PubMed:19617588}.,FUNCTION: Regulates the mitotic activity in roots. {ECO:0000250}. 19134,16634,17455 WPP domain-containing protein 2 (MFP1 attachment factor 2),WPP domain-containing protein 1 (MFP1 attachment factor 1),WPP domain-containing protein 3 (MFP1 attachment factor 3) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nuclear outer membrane [GO:0005640]; plasma membrane [GO:0005886]; lateral root development [GO:0048527],Golgi apparatus [GO:0005794]; nuclear matrix [GO:0016363]; nuclear outer membrane [GO:0005640]; lateral root development [GO:0048527],cytoplasm [GO:0005737]; nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:15548735}.,TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:15548735}. locus:2036736;,locus:2167831;,locus:2143749; AT1G47200,AT5G43070,AT5G27940 MFP1 attachment factor Os10g0337700 protein (Fragment),MFP1 attachment factor 1 (MFP1 attachment factor 1, putative, expressed) (Os03g0209000 protein) (cDNA clone:002-133-B05, full insert sequence) Q0IYC5,Q8H056 Q0IYC5_ORYSJ,Q8H056_ORYSJ Os10g0337700 OSNPB_100337700,OSJNBa0014O06.16 LOC_Os03g11060 Os03g0209000 OSNPB_030209000 ENOG411E6C1 ATL23 Q8L9W3 ATL23_ARATH E3 ubiquitin-protein ligase ATL23 (EC 2.3.2.27) (RING-H2 finger protein ATL23) (RING-type E3 ubiquitin transferase ATL23) FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro. {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 17757 E3 ubiquitin-protein ligase ATL23 (EC 2.3.2.27) (RING-H2 finger protein ATL23) (RING-type E3 ubiquitin transferase ATL23) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567] locus:2165735; AT5G42200 E3 ubiquitin-protein ligase ATL23-like NA NA NA NA NA NA NA ENOG411E6C2 Q1G3W3,Q9LM48 Q1G3W3_ARATH,Q9LM48_ARATH FANTASTIC four protein, putative (DUF3049),F2E2.18 (Structural constituent of ribosome) 12619,30994 FANTASTIC four protein, putative (DUF3049),F2E2.18 (Structural constituent of ribosome) locus:4515102770;,locus:2030586; AT1G77932,AT1G22110 Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411E6C4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0379700 protein,Os07g0501600 protein A0A0P0VY52,A0A0P0X6H7 A0A0P0VY52_ORYSJ,A0A0P0X6H7_ORYSJ Os03g0379700 OSNPB_030379700,Os07g0501600 OSNPB_070501600 ENOG411E6C5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0724600 protein (Fragment),Expressed protein (Os03g0151500 protein) (cDNA clone:002-156-A04, full insert sequence),Os03g0745500 protein (Os03g0745550 protein) (Fragment),Os03g0716400 protein Q0DP01,Q10RP3,Q0DNM9,A0A0N7KHY1 Q0DP01_ORYSJ,Q10RP3_ORYSJ,Q0DNM9_ORYSJ,A0A0N7KHY1_ORYSJ Os03g0724600 OSNPB_030724600,Os03g0151500 LOC_Os03g05700 Os03g0151500 OSNPB_030151500,Os03g0745550 Os03g0745500 OSNPB_030745550,Os03g0716400 OSNPB_030716400 ENOG411E6C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0507600 protein (cDNA, clone: J065142K02, full insert sequence) Q6K2H1 Q6K2H1_ORYSJ Os02g0507600 Os02g0507600 OsJ_06859 OSJNBa0052M16.7 OSNPB_020507600 P0047E05.34 ENOG411E6CY BPC3 Q9C9X6 BPC3_ARATH Protein BASIC PENTACYSTEINE3 (AtBPC3) FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. 30392 Protein BASIC PENTACYSTEINE3 (AtBPC3) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the gynobasal portion of the ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. AT1G68120 GAGA binding protein-like family NA NA NA NA NA NA NA ENOG411E6CR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411E6CT Q8LDV3 Y4320_ARATH Uncharacterized protein At4g13200, chloroplastic 20430 Uncharacterized protein At4g13200, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; plastoglobule [GO:0010287]; thylakoid [GO:0009579] locus:2119355; AT4G13200 NA Os04g0513000 protein (Fragment) Q0JBS2 Q0JBS2_ORYSJ Os04g0513000 Os04g0513000 OSNPB_040513000 ENOG411E6CW Q84RE5 Q84RE5_ARATH Transmembrane family 220 helix protein (Uncharacterized protein At2g23755/F27L4.16) 17012 Transmembrane family 220 helix protein (Uncharacterized protein At2g23755/F27L4.16) integral component of membrane [GO:0016021] locus:504956033; AT2G23755 NA NA NA NA NA NA NA NA ENOG411E6CH DYT1 O81900 DYT1_ARATH Transcription factor DYT1 (Basic helix-loop-helix protein 22) (AtbHLH22) (bHLH 22) (Protein DYSFUNCTIONAL TAPETUM 1) (Transcription factor EN 49) (bHLH transcription factor bHLH022) developmental defects in the tapetum at anther stage 4 and later. Male sterile due to anther defects-H. Ma-2006 FUNCTION: Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. 24022 Transcription factor DYT1 (Basic helix-loop-helix protein 22) (AtbHLH22) (bHLH 22) (Protein DYSFUNCTIONAL TAPETUM 1) (Transcription factor EN 49) (bHLH transcription factor bHLH022) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther wall tapetum development [GO:0048658]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed in floral meristem and early anther primordia. Later detected in archesporial cells. From stage 4 to early stage 5, weakly expressed in precursors of the middle layer, tapetum and meiocytes. Strongly expressed in the tapetum from late anther stage 5 to early stage 6, and at a lower level in meiocytes. {ECO:0000269|PubMed:16831835}. TISSUE SPECIFICITY: Mostly expressed in anthers, and, to a lower extent, in young inflorescences undergoing meiosis and siliques. {ECO:0000269|PubMed:16831835}. locus:2141206; AT4G21330 transcription factor DYSFUNCTIONAL TAPETUM NA NA NA NA NA NA NA ENOG411E6CI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0627300 protein B9FCM8 B9FCM8_ORYSJ Os04g0627300 OsJ_16254 OSNPB_040627300 ENOG411E6CJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0152500 protein Q5ZD68 Q5ZD68_ORYSJ Os01g0152500 OSNPB_010152500 P0009G03.32 P0030H07.11 ENOG411E6CM CRR42 A0A1P8BF40,F4K6X0 A0A1P8BF40_ARATH,F4K6X0_ARATH DUF3148 family protein 10294,13273 DUF3148 family protein locus:505006624; AT5G20935 Protein of unknown function (DUF3148) Os07g0164200 protein A0A0P0X302 A0A0P0X302_ORYSJ Os07g0164200 OSNPB_070164200 ENOG411E6CN Q9ZVE8 Q9ZVE8_ARATH At2g01580 (Transmembrane protein) (Uncharacterized protein At2g01580) 20439 At2g01580 (Transmembrane protein) (Uncharacterized protein At2g01580) integral component of membrane [GO:0016021] locus:2049557; AT2G01580 NA NA NA NA NA NA NA NA ENOG411E6CA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BowB Os01g0131900 protein (Putative wound-induced protease inhibitor),Os01g0132000 protein (Putative wound-induced protease inhibitor) (cDNA clone:001-024-F05, full insert sequence) Q9LGB3,Q9LGB2 Q9LGB3_ORYSJ,Q9LGB2_ORYSJ Os01g0131900 Os01g0131900 OsJ_00249 OSNPB_010131900 P0504H10.31,Os01g0132000 Os01g0132000 OsJ_00250 OSJNBa0083M16.1 OSNPB_010132000 P0504H10.32 ENOG411E6CB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0160200 protein Q2QXE7 Q2QXE7_ORYSJ LOC_Os12g06290 Os12g0160200 OsJ_35301 OSNPB_120160200 ENOG411E6CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA agamous-like MADS-box protein AGL62-like Os06g0504451 protein,MADS-box protein-like (Os06g0504100 protein) A3BC49,Q654X7 A3BC49_ORYSJ,Q654X7_ORYSJ Os06g0504451 OsJ_21479 OSNPB_060504451,Os06g0504100 OJ1288_C01.10 OsJ_21477 OSNPB_060504100 ENOG411E6CD Q9FYF8 Q9FYF8_ARATH At1g67350 (F1N21.17) (NADH-ubiquinone oxidoreductase) 11791 At1g67350 (F1N21.17) (NADH-ubiquinone oxidoreductase) mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; respiratory chain complex I [GO:0045271]; photorespiration [GO:0009853] locus:2019589; AT1G67350 NA Expressed protein (Os03g0685900 protein) (cDNA clone:001-109-F03, full insert sequence) Q6AVU9 Q6AVU9_ORYSJ OSJNBb0024N19.16 LOC_Os03g48110 Os03g0685900 OsJ_12148 OSNPB_030685900 ENOG411E6CE Q9M9N2 Q9M9N2_ARATH LisH domain-like protein (T17B22.18 protein) 57435 LisH domain-like protein (T17B22.18 protein) locus:2097715; AT3G03130 NA NA NA NA NA NA NA NA ENOG411E6CF COR27 Q8L8T7,F4K352 Q8L8T7_ARATH,F4K352_ARATH Cold regulated protein 27 (Uncharacterized protein At5g42900) (Uncharacterized protein At5g42900/MBD2_9),Cold regulated protein 27 27347,27276 Cold regulated protein 27 (Uncharacterized protein At5g42900) (Uncharacterized protein At5g42900/MBD2_9),Cold regulated protein 27 nucleus [GO:0005634]; regulation of circadian rhythm [GO:0042752]; response to cold [GO:0009409]; response to karrikin [GO:0080167]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2159976; AT5G42900 expressed protein Expressed protein (Os03g0184100 protein) (cDNA clone:J013106B15, full insert sequence) Q10QT4 Q10QT4_ORYSJ LOC_Os03g08580 Os03g0184100 OsJ_09684 OSNPB_030184100 ENOG411E6CG Q84R26,F4JEK7 Q84R26_ARATH,F4JEK7_ARATH Ribosomal protein L34 (Uncharacterized protein At3g13885),Ribosomal protein L34 16632,22913 Ribosomal protein L34 (Uncharacterized protein At3g13885),Ribosomal protein L34 ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:1009023266; AT3G13882 ribosomal protein L34 LIN1 protein-like (Os01g0571200 protein) (cDNA clone:J023110L12, full insert sequence) Q8LR04 Q8LR04_ORYSJ Os01g0571200 Os01g0571200 B1129G05.4 OsJ_02286 OSNPB_010571200 ENOG411DPQS ARF3,ETT O23661,A0A1P8AZW3 ARFC_ARATH,A0A1P8AZW3_ARATH Auxin response factor 3 (Protein ETTIN),Auxin response factor Unusual gynoecium and floral patterning defects including an increased number of sepals and carpels.,Short internodes abnormal phyllotaxy misshapen floral organs variable floral organ numbers gynoecium lacks valve tissue abnormally positioned ovules. Resembles kanadi homozygous mutants.,The gynoecia of double mutants showed severe reduction of the ovary and morphological abnormalities in the apical region that were similar to ett strong allele mutant phenotypes. Occasionally inflorescences of the double mutant failed to produce any normal flower buds resulting in pin-like structures that were not found in either stv1 or ett single mutants. Pin-like inflorescences are formed in mp pid and pin1 mutants and in wild-type plants treated with polar auxin transport inhibitors.,The gynoecial defects of ett-1 mutants such as reduction in ovary size and increased gynophore elongation were enhanced by the sty1-1 mutation. A number of double mutant gynoecia were nearly completely valveless and in those ovules grew on top of a placental surface. In addition the apical ends of sty1-1 ett-1 gynoecia were less fused than those of ett-1 and sty1-1 and ovules frequently protruded at the apex. The amount of stylar and stigmatic tissues was reduced compared with ett-1 and the double mutant was sterile. As in ett-1 gynoecia ectopic tissue of transmitting tract identity was generally present. Abnormal flower morphology-P. Zambryski-1997 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 66606,49866 Auxin response factor 3 (Protein ETTIN),Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abaxial cell fate specification [GO:0010158]; auxin metabolic process [GO:0009850]; auxin-activated signaling pathway [GO:0009734]; floral meristem determinacy [GO:0010582]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351]; vegetative phase change [GO:0010050],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected during gynoecium development. TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:9409666}. locus:2057609; AT2G33860 auxin response factor Auxin response factor 15 (ETTIN-like protein 1) (OsETTIN1),Auxin response factor 2 (ETTIN-like protein 2) (OsETTIN2),Auxin response factor 3,Auxin response factor (Fragment),Os05g0563400 protein (Fragment) Q8S985,Q0JKI9,Q5JMM1,A0A0P0V6C9,A0A0P0WQT9 ARFO_ORYSJ,ARFB_ORYSJ,ARFC_ORYSJ,A0A0P0V6C9_ORYSJ,A0A0P0WQT9_ORYSJ ARF15 Os05g0563400 LOC_Os05g48870 OsJ_018762 OSJNBb0053D02.5,ARF2 Os01g0670800 LOC_Os01g48060,ARF3 Os01g0753500 LOC_Os01g54990 P0435B05.36 P0503C12.8,Os01g0670800 OSNPB_010670800,Os05g0563400 OSNPB_050563400 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. ENOG411ECJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411ECJQ PAP21 Q9LXI4 PPA21_ARATH Purple acid phosphatase 21 (EC 3.1.3.2) ARA:AT3G52810-MONOMER; 3.1.3.2 50641 Purple acid phosphatase 21 (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2083218; AT3G52810 Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411ECJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411ECJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EETF Q9LFF6 H2B8_ARATH Histone H2B.8 (HTB6) FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. R-ATH-212300;R-ATH-2299718;R-ATH-2559580;R-ATH-2559582;R-ATH-5578749;R-ATH-5689880;R-ATH-5693565; 15225 Histone H2B.8 (HTB6) nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982] locus:2084096; AT3G53650 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling NA NA NA NA NA NA NA ENOG411EETD WRKY64,WRKY66,WRKY63,WRKY67 Q9C557,Q9M8M6,Q9C6H5,Q93WV7,C0SV18 WRK64_ARATH,WRK66_ARATH,WRK63_ARATH,WRK67_ARATH,C0SV18_ARATH Probable WRKY transcription factor 64 (WRKY DNA-binding protein 64),Probable WRKY transcription factor 66 (WRKY DNA-binding protein 66),Probable WRKY transcription factor 63 (WRKY DNA-binding protein 63),Probable WRKY transcription factor 67 (WRKY DNA-binding protein 67),Uncharacterized protein At1g66550 (WRKY DNA-binding protein 67) (Fragment) When grown on MS medium with ABA abo3 mutant was more sensitive to ABA than the wild type during seedling establishment. Mutant seedlings exhibited slower root growth on MS medium as compared to the wild type. Mutant is impaired in ABA induced stomatal closure and more sensitive ti drought stress than the wild type. Sensitive to drought and ABA-Z. Gong-2010 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 28550,26403,27379,29040,28363 Probable WRKY transcription factor 64 (WRKY DNA-binding protein 64),Probable WRKY transcription factor 66 (WRKY DNA-binding protein 66),Probable WRKY transcription factor 63 (WRKY DNA-binding protein 63),Probable WRKY transcription factor 67 (WRKY DNA-binding protein 67),Uncharacterized protein At1g66550 (WRKY DNA-binding protein 67) (Fragment) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2028952;,locus:2198963;,locus:2195165;,locus:2028962; AT1G66560,AT1G80590,AT1G66600,AT1G66550 Transcription factor. Interacts specifically with the W box (5'-(T)TGAC CT -3') a frequently occurring elicitor- responsive cis-acting element (By similarity) NA NA NA NA NA NA NA ENOG411EETH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411ECMK Q9LFG1 Y3359_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 (EC 2.7.11.1) 2.7.11.1 104889 Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2084016; AT3G53590 STYKc NA NA NA NA NA NA NA ENOG411ECMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF629) Os11g0599000 protein A0A0N7KT63 A0A0N7KT63_ORYSJ Os11g0599000 OSNPB_110599000 ENOG411ECMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH:flavin oxidoreductase / NADH oxidase family NA NA NA NA NA NA NA ENOG411ECMH Q9ZPV7 RER1D_ARATH Protein RER1D (AtRER1D) FUNCTION: Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. {ECO:0000250}. 25730 Protein RER1D (AtRER1D) integral component of membrane [GO:0016021]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2062185; AT2G18240 Rer1 family NA NA NA NA NA NA NA ENOG411ECME Q9LR53,F4I2H1 Q9LR53_ARATH,F4I2H1_ARATH F21B7.34 (Protein kinase superfamily protein) (Uncharacterized protein At1g03740),Protein kinase superfamily protein R-ATH-674695;R-ATH-6796648; 84477,79464 F21B7.34 (Protein kinase superfamily protein) (Uncharacterized protein At1g03740),Protein kinase superfamily protein nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2020708; AT1G03740 S_TKc NA NA NA NA NA NA NA ENOG411ECMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411ECMC CYP705A20,CYP705A23,CYP705A13 Q9LJY7,Q9LJY4,Q9SI49 C75AK_ARATH,Q9LJY4_ARATH,Q9SI49_ARATH Cytochrome P450 705A20 (EC 1.14.-.-),Cytochrome P450 family protein (Cytochrome P450, family 705, subfamily A, polypeptide 23) (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 13 (Putative cytochrome P450) ARA:AT3G20110-MONOMER;,ARA:AT3G20140-MONOMER;,ARA:AT2G14100-MONOMER; 1.14.-.- 58049,57525,58815 Cytochrome P450 705A20 (EC 1.14.-.-),Cytochrome P450 family protein (Cytochrome P450, family 705, subfamily A, polypeptide 23) (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 13 (Putative cytochrome P450) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2087585;,locus:2087645;,locus:2059491; AT3G20110,AT3G20140,AT2G14100 Cytochrome P450 NA NA NA NA NA NA NA ENOG411ECMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EETZ PSAK Q9SUI5 PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplastic (PSI-K) (Photosystem I subunit X) Double mutants were intermediate in mean size when compared with the corresponding single mutants.,Germination of mutant seeds was not affected and visual inspection did not reveal any drastic change in phenotype compared with WT plants except for a slightly lighter pigmentation.,Increase in the Chl a/b ratio.,No drop in total Chl levels.,The level of the xanthophyll cycle pigments (VAZ-pool) was higher than in WT plants.,Decrease in mean size. MetaCyc:MONOMER-1091; 13206 Photosystem I reaction center subunit psaK, chloroplastic (PSI-K) (Photosystem I subunit X) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; photosynthesis [GO:0015979] locus:2204207; AT1G30380 Photosystem I psaG / psaK NA NA NA NA NA NA NA ENOG411EETX Q8GXV0,Q8L9S2,Q6ID71,Q6AWV3,Q2V4L0 Q8GXV0_ARATH,Q8L9S2_ARATH,Q6ID71_ARATH,Q6AWV3_ARATH,Q2V4L0_ARATH At1g26797 (Plant self-incompatibility protein S1 family),Plant self-incompatibility protein S1 family,At1g26798 (Plant self-incompatibility protein S1 family),At1g26799 (Plant self-incompatibility protein S1 family) 16311,17324,17323,17343,17260 At1g26797 (Plant self-incompatibility protein S1 family),Plant self-incompatibility protein S1 family,At1g26798 (Plant self-incompatibility protein S1 family),At1g26799 (Plant self-incompatibility protein S1 family) locus:1005716688;,locus:505006148;,locus:1006230770;,locus:1006230771;,locus:1009023099; AT1G26797,AT1G26795,AT1G26798,AT1G26799,AT1G26796 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411ECMY F633.5 Q9LNJ7 Q9LNJ7_ARATH At1g01240/F6F3_11 (F633.5 protein) (Transmembrane protein) (Uncharacterized protein At1g01240) 37512 At1g01240/F6F3_11 (F633.5 protein) (Transmembrane protein) (Uncharacterized protein At1g01240) integral component of membrane [GO:0016021] locus:2035242; AT1G01240 NA NA NA NA NA NA NA NA ENOG411ECMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp90 protein NA NA NA NA NA NA NA ENOG411EET4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADP-ribosylation factor family NA NA NA NA NA NA NA ENOG411EET1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411ECJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter C family member 10-like NA NA NA NA NA NA NA ENOG411DZ4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411DZ4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0420500 protein Q6L4Z2 Q6L4Z2_ORYSJ Os05g0420500 OSJNBb0092E21.2 OSNPB_050420500 P0426G01.17 ENOG411DZ4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os02g0603000 protein Q0DZR2 Q0DZR2_ORYSJ Os02g0603000 Os02g0603000 OSNPB_020603000 ENOG411DZ4V HOP2 Q9FX64 HOP2_ARATH Homologous-pairing protein 2 homolog (Protein AHP2) (AtAHP2) (Protein ARABIDOPSIS HOMOLOG PAIRING 2) (Protein HOP2) (AtHOP2) DISRUPTION PHENOTYPE: Sterility due to failure of both male and female gametophyte development. {ECO:0000269|PubMed:12974806}. Defective in meiotic double strand break formation. Fewer chiasmata formed per cell compared to the wild type cells. Complete sterility due to defects in meiosis-R. Sablowski-2003 FUNCTION: Involved in bivalent formation and segregation of homologous chromosomes in meiosis. 26245 Homologous-pairing protein 2 homolog (Protein AHP2) (AtAHP2) (Protein ARABIDOPSIS HOMOLOG PAIRING 2) (Protein HOP2) (AtHOP2) nucleus [GO:0005634]; chiasma assembly [GO:0051026] TISSUE SPECIFICITY: Expressed in vegetative and reproductive tissues. Found in seedlings, leaves and flowers. {ECO:0000269|PubMed:12974806}. locus:2205359; AT1G13330 homologous-pairing protein 2 Os03g0710100 protein (Tat binding protein 1 containing protein, expressed) (cDNA clone:J033115K05, full insert sequence) Q10E31 Q10E31_ORYSJ Os03g0710100 LOC_Os03g50220 OsJ_12305 OSNPB_030710100 ENOG411DZ4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B4 (Beta-expansin-4) (OsEXPB4) (OsaEXPb1.7),Os10g0556100 protein (Fragment) Q94LR4,A0A0P0XX12 EXPB4_ORYSJ,A0A0P0XX12_ORYSJ EXPB4 Os10g0556100 LOC_Os10g40730 OsJ_32421 OSJNBa0010C11.2,Os10g0556100 OSNPB_100556100 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DZ4T Q8VY63 MPU12_ARATH Mannose-P-dolichol utilization defect 1 protein homolog 2 FUNCTION: Required for normal utilization of mannose-dolichol phosphate (Dol-P-Man) in the synthesis of N-linked and O-linked oligosaccharides and GPI anchors. {ECO:0000250}. R-ATH-446193; 25799 Mannose-P-dolichol utilization defect 1 protein homolog 2 integral component of membrane [GO:0016021]; dolichol-linked oligosaccharide biosynthetic process [GO:0006488]; transport [GO:0006810] locus:2124367; AT4G07390 mannose-P-dolichol utilization defect 1 protein Os07g0479200 protein (Putative Mannose-P-dolichol utilization defect 1 protein homolog) (cDNA clone:001-014-B11, full insert sequence) Q7X990 Q7X990_ORYSJ P0434A03.107 P0640E12.146 Os07g0479200 OSNPB_070479200 ENOG411DZ4U LBD36,LBD32,LBD35 Q9FKZ3,O49651,Q9FFL3 LBD36_ARATH,LBD32_ARATH,LBD35_ARATH LOB domain-containing protein 36 (ASYMMETRIC LEAVES 2-like protein 1) (AS2-like protein 1),LOB domain-containing protein 32 (ASYMMETRIC LEAVES 2-like protein 26) (AS2-like protein 26),LOB domain-containing protein 35 (ASYMMETRIC LEAVES 2-like protein 27) (AS2-like protein 27) DISRUPTION PHENOTYPE: No visible phenotype; due to the partial redundancy with AS2. Gain-of-function mutants iso-3D, iso-4D and dsl1-D (T-DNA and transposon tagging) show flowers and siliques bended downwards. {ECO:0000269|PubMed:12040093}. No visible mutant phenotype.,Flowers and siliques bend downwards and pedicels are reduced in length. The inflorescence is more compact with respect to wild type due to a reduction in internode length. Overall plant height is approximately half that of a wild type Ws-3 plant. Change in lignin deposition in the mutant. Deposition begins much earlier in the mutant and an irregular pattern of lignin accumulation results in gaps in the lignin ring. FUNCTION: Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. 34523,21286,22816 LOB domain-containing protein 36 (ASYMMETRIC LEAVES 2-like protein 1) (AS2-like protein 1),LOB domain-containing protein 32 (ASYMMETRIC LEAVES 2-like protein 26) (AS2-like protein 26),LOB domain-containing protein 35 (ASYMMETRIC LEAVES 2-like protein 27) (AS2-like protein 27) leaf morphogenesis [GO:0009965]; petal development [GO:0048441]; proximal/distal pattern formation [GO:0009954]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. locus:2174989;,locus:2132604;,locus:2165179; AT5G66870,AT4G22700,AT5G35900 lob domain-containing protein Os03g0612400 protein (Fragment) A0A0P0W082 A0A0P0W082_ORYSJ Os03g0612400 OSNPB_030612400 ENOG411DZ4R ABC1K8 Q93Y08 AB1K8_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic (ABC1-LIKE KINASE 8) (EC 2.7.11.1) (ABC2 homolog protein 13) (AtATH13) (Oxidative stress-related ABC1-like protein 1, chloroplastic) (AtOSA1) DISRUPTION PHENOTYPE: Increased sensitivity toward oxidative stress (e.g. hydrogen peroxide H(2)O(2)), high light and cadmium ions Cd(2+). Higher superoxide dismutase activities in chloroplast and disturbed expression of genes involved in the antioxidant pathway (PubMed:18390807). Pale green plants. The pale green double mutant atsia1 atosa1 accumulates ferritin and superoxides, exhibits an increased nonphotochemical quenching (NPQ), and have a reduced tolerance to reactive oxygen species (ROS) (PubMed:24117441). Lower levels of the highly unsaturated lipid digalactosyldiacylglycerol (DGDG) and of different forms of monogalactosyldiacylglycerol (MGDG) and kaempferol. Higher levels of oxylipin-conjugated DGDG and sinapates. The abc1k7 abc1k8 double mutant accumulates strong levels of oxylipin-conjugated MGDG and DGDG (PubMed:25809944). {ECO:0000269|PubMed:18390807, ECO:0000269|PubMed:24117441, ECO:0000269|PubMed:25809944}. FUNCTION: Involved in resistance to oxidative stress (e.g. hydrogen peroxide H(2)O(2)), high light and heavy metals (e.g. cadmium ions Cd(2+)) (PubMed:18390807, PubMed:24117441). Influences responses to reactive oxygen species (ROS) production. Together with SIA1, regulates iron distribution within the chloroplast and mediates the oxidative stress response (PubMed:24117441). Together with ABC1K7, influences chloroplast lipid synthesis/accumulation and modulates chloroplast membrane composition in response to stress (PubMed:25809944). {ECO:0000269|PubMed:18390807, ECO:0000269|PubMed:24117441, ECO:0000269|PubMed:25809944}. ARA:GQT-347-MONOMER; 2.7.11.1 86023 Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic (ABC1-LIKE KINASE 8) (EC 2.7.11.1) (ABC2 homolog protein 13) (AtATH13) (Oxidative stress-related ABC1-like protein 1, chloroplastic) (AtOSA1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; transporter activity [GO:0005215]; cellular response to oxidative stress [GO:0034599]; circadian rhythm [GO:0007623]; iron ion homeostasis [GO:0055072]; leaf senescence [GO:0010150]; membrane lipid biosynthetic process [GO:0046467]; regulation of response to reactive oxygen species [GO:1901031]; response to cadmium ion [GO:0046686]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; response to iron ion starvation [GO:1990641]; response to oxidative stress [GO:0006979]; transport [GO:0006810] TISSUE SPECIFICITY: Mostly expressed in leaves and flowers, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:18390807, ECO:0000269|PubMed:24117441}. locus:2177719; AT5G64940 ABC1 family Os02g0575500 protein (Putative ABC transporter),Os02g0575500 protein (Fragment) Q69S79,A0A0N7KFJ3 Q69S79_ORYSJ,A0A0N7KFJ3_ORYSJ P0703B01.21-1 Os02g0575500 OsJ_07239 OSNPB_020575500,Os02g0575500 OSNPB_020575500 ENOG411DZ4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein Heat shock 70 kDa protein, putative, expressed (Os11g0187500 protein) (cDNA clone:001-124-C07, full insert sequence),Os11g0187600 protein (Fragment),Os11g0187800 protein,Os11g0187700 protein Q2R9K4,Q0IU43,A0A0N7KSJ6,A0A0P0XZZ0 Q2R9K4_ORYSJ,Q0IU43_ORYSJ,A0A0N7KSJ6_ORYSJ,A0A0P0XZZ0_ORYSJ LOC_Os11g08440 Os11g0187500 OSNPB_110187500,Os11g0187600 OSNPB_110187600,Os11g0187800 OSNPB_110187800,Os11g0187700 OSNPB_110187700 ENOG411DZ4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Iron-Sulfur binding protein C terminal Os05g0157300 protein (cDNA clone:006-206-D09, full insert sequence),Os05g0157300 protein (Fragment),Os05g0157300 protein Q75M00,A0A0P0WI65,A0A0P0WID2 Q75M00_ORYSJ,A0A0P0WI65_ORYSJ,A0A0P0WID2_ORYSJ Os05g0157300 OSNPB_050157300 P0676G05.13,Os05g0157300 OSNPB_050157300 ENOG411DZ4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein Os01g0968600 protein A0A0N7KEH2 A0A0N7KEH2_ORYSJ Os01g0968600 OSNPB_010968600 ENOG411DZ4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldehyde dehydrogenase family NA NA NA NA NA NA NA ENOG411DZ4J SOBER1 Q8GYK2,Q84WK4,A0A1P8B7S1,A0A1P8ARE5,A0A1P8ARH0,A0A1P8ARF5,B3H743 SOBRL_ARATH,SOBR1_ARATH,A0A1P8B7S1_ARATH,A0A1P8ARE5_ARATH,A0A1P8ARH0_ARATH,A0A1P8ARF5_ARATH,B3H743_ARATH Probable carboxylesterase SOBER1-like (EC 3.1.1.-),Carboxylesterase SOBER1 (EC 3.1.1.-) (Phospholipase A2 SOBER1) (Protein SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1),Alpha/beta-Hydrolases superfamily protein,Acyl thioesterase-like protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show hypersensitive response to infection with the bacterial pathogen Xanthomonas campestris pv. vesicatoria containing the type III effector protein AvrBsT. {ECO:0000269|PubMed:17293566}. Resistant to bacterial infection-M. Mudgett-2009 FUNCTION: Carboxylesterase. {ECO:0000250|UniProtKB:Q84WK4}.,FUNCTION: Possesses carboxylesterase activity in vitro with a preference for short acyl chain substrates. Functions as a negative regulator of the hypersensitive response (HR) triggered by the bacterial type III effector protein AvrBsT (PubMed:17293566). Possesses phospholipase A2 (PLA2) activity and hydrolyzes phosphatidylcholine (PC), a lipid that is hydrolyzed by phospholipase D (PLD) to produce phosphatidic acid (PA). Required to suppress AvrBsT-dependent HR and PLD-dependent production of PA in response to AvrBsT elicitation (PubMed:19918071). {ECO:0000269|PubMed:17293566, ECO:0000269|PubMed:19918071}. ARA:AT4G22300-MONOMER; 3.1.1.- 28703,24845,24402,6547,8050,6664,6937 Probable carboxylesterase SOBER1-like (EC 3.1.1.-),Carboxylesterase SOBER1 (EC 3.1.1.-) (Phospholipase A2 SOBER1) (Protein SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1),Alpha/beta-Hydrolases superfamily protein,Acyl thioesterase-like protein cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; carboxylic ester hydrolase activity [GO:0052689]; palmitoyl-(protein) hydrolase activity [GO:0008474]; defense response, incompatible interaction [GO:0009814]; fatty acid metabolic process [GO:0006631]; protein depalmitoylation [GO:0002084]; regulation of plant-type hypersensitive response [GO:0010363],cytoplasm [GO:0005737]; carboxylic ester hydrolase activity [GO:0052689]; palmitoyl-(protein) hydrolase activity [GO:0008474]; phospholipase A2 activity [GO:0004623]; short-chain carboxylesterase activity [GO:0034338]; defense response to bacterium, incompatible interaction [GO:0009816]; fatty acid metabolic process [GO:0006631]; phosphatidic acid biosynthetic process [GO:0006654]; protein depalmitoylation [GO:0002084],hydrolase activity [GO:0016787],cytoplasm [GO:0005737]; carboxylic ester hydrolase activity [GO:0052689]; palmitoyl-(protein) hydrolase activity [GO:0008474]; protein depalmitoylation [GO:0002084] locus:2132085;,locus:6530298215;,locus:4515102546; AT4G22300,AT4G22305,AT1G18773 acyl-protein thioesterase Probable carboxylesterase Os04g0669500 (EC 3.1.1.-) Q0J969 CAEH1_ORYSJ Os04g0669500 LOC_Os04g57370 OsJ_16562 OSJNBa0043A12.21 FUNCTION: Possesses carboxylesterase activity in vitro. {ECO:0000250|UniProtKB:Q84WK4}. ENOG411DZ4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HCO3- transporter family Boron transporter (Os05g0176800 protein) Q1ZYR6 Q1ZYR6_ORYSJ BOR4 Os05g0176800 OSNPB_050176800 ENOG411DZ4H CPN60A2,Cpn60alpha2 Q56XV8,A0A1P8BAS2,A0A1P8BAR0 CPNA2_ARATH,A0A1P8BAS2_ARATH,A0A1P8BAR0_ARATH Chaperonin 60 subunit alpha 2, chloroplastic (CPN-60 alpha 2) (Protein EMBRYO DEFECTIVE 3007),TCP-1/cpn60 chaperonin family protein Embryo defective; Globular-D. Meinke-2004 FUNCTION: Involved in protein assisted folding. {ECO:0000250}. 61193,49806,47712 Chaperonin 60 subunit alpha 2, chloroplastic (CPN-60 alpha 2) (Protein EMBRYO DEFECTIVE 3007),TCP-1/cpn60 chaperonin family protein chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; mitochondrion organization [GO:0007005]; protein refolding [GO:0042026],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein refolding [GO:0042026] locus:2144955; AT5G18820 RuBisCO large subunit-binding protein subunit alpha Os09g0563300 protein,Os09g0563300 protein (Fragment) C7J6P2,A0A0P0XRP2 C7J6P2_ORYSJ,A0A0P0XRP2_ORYSJ Os09g0563300 OSNPB_090563300 ENOG411DZ4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os04g0450300 protein A0A0P0WAZ3 A0A0P0WAZ3_ORYSJ Os04g0450300 OSNPB_040450300 ENOG411DZ4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 29 (sialyltransferase) Sialyltransferase-like protein 3 (OsSTLP3) (EC 2.4.99.-) Q7FA29 STLP3_ORYSJ STLP3 Os04g0506800 LOC_Os04g42760 OsJ_15390 OSJNBa0043L24.2 OSJNBb0002J11.10 FUNCTION: Possesses sialyltransferase-like activity in vitro. Transfers sialic acid to the glycoprotein asialofetuin. The transferred sialic acid is linked to galactose of Gal-beta-1,3-GalNAc through alpha-2,6-linkage. {ECO:0000269|PubMed:16452316}. ENOG411DZ4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein Heat shock 70 kDa protein BIP5 (Luminal-binding protein 5) (OsBiP5),Heat shock 70 kDa protein BIP4 (Luminal-binding protein 4) (OsBiP4),Heat shock 70 kDa protein BIP3 (Luminal-binding protein 3) (OsBiP3),Os01g0517900 protein (Fragment),Os01g0517850 protein,Os06g0482700 protein,Os06g0483100 protein (Fragment) Q6Z058,Q75HQ0,Q6L590,A0A0N7KD24,A0A0P0V3A6,A0A0P0WWL2,A0A0P0WX25 BIP5_ORYSJ,BIP4_ORYSJ,BIP3_ORYSJ,A0A0N7KD24_ORYSJ,A0A0P0V3A6_ORYSJ,A0A0P0WWL2_ORYSJ,A0A0P0WX25_ORYSJ BIP5 Os08g0197700 LOC_Os08g09770 P0412D08.27,BIP4 Os05g0428600 LOC_Os05g35400 OSJNBb0048I21.2 P0636F09.18,BIP3 Os05g0367800 LOC_Os05g30480 OJ1393_A07.8,Os01g0517900 OSNPB_010517900,Os01g0517850 OSNPB_010517850,Os06g0482700 OSNPB_060482700,Os06g0483100 OSNPB_060483100 FUNCTION: Functions as chaperone during endoplasmic reticulum (ER) stress response. {ECO:0000250|UniProtKB:Q6Z7B0}. ENOG411DZ4D F13I12.260,MQJ16.8 Q9SD53,Q9SD52,Q9SJR2,Q9FK85,A0A1I9LNI2 Y3720_ARATH,Q9SD52_ARATH,Q9SJR2_ARATH,Q9FK85_ARATH,A0A1I9LNI2_ARATH UPF0481 protein At3g47200,AT3g47210/F13I12_260 (Uncharacterized protein F13I12.260),Transmembrane protein, putative (DUF247) (Uncharacterized protein At2g36430),At5g22540 (Emb|CAB72473.1) (Transmembrane protein, putative (DUF247)) (Uncharacterized protein At5g22540),Transmembrane protein 54119,54810,52018,50429,21855 UPF0481 protein At3g47200,AT3g47210/F13I12_260 (Uncharacterized protein F13I12.260),Transmembrane protein, putative (DUF247) (Uncharacterized protein At2g36430),At5g22540 (Emb|CAB72473.1) (Transmembrane protein, putative (DUF247)) (Uncharacterized protein At5g22540),Transmembrane protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2075671;,locus:2075686;,locus:2044918;,locus:2171127; AT3G47200,AT3G47210,AT2G36430,AT5G22540 UPF0481 protein Os01g0320100 protein Q656Q9 Q656Q9_ORYSJ B1153F04.33 Os01g0320100 OSNPB_010320100 ENOG411DZ4E OPT1,OPT5 Q9FG72,Q9SUA4 OPT1_ARATH,OPT5_ARATH Oligopeptide transporter 1 (AtOPT1),Oligopeptide transporter 5 (AtOPT5) FUNCTION: Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. {ECO:0000269|PubMed:11788749}. 85349,84890 Oligopeptide transporter 1 (AtOPT1),Oligopeptide transporter 5 (AtOPT5) integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; oligopeptide transmembrane transporter activity [GO:0035673]; protein transport [GO:0015031] TISSUE SPECIFICITY: Highly expressed in flowers, and moderately expressed in leaves and stems. {ECO:0000269|PubMed:11788749}.,TISSUE SPECIFICITY: Expressed predominantly in flowers, and at a very low level in leaves and roots. {ECO:0000269|PubMed:11788749}. locus:2178398;,locus:2133882; AT5G55930,AT4G26590 oligopeptide transporter Os08g0320200 protein (Putative sexual differentiation process protein isp4) (cDNA clone:J023102I03, full insert sequence),Os08g0320200 protein (Putative sexual differentiation process protein isp4),Os08g0492000 protein (Putative glutathione transporter) Q6Z0P5,Q6Z0P4,Q6Z8U6 Q6Z0P5_ORYSJ,Q6Z0P4_ORYSJ,Q6Z8U6_ORYSJ OJ1136_D12.119-2 P0465H09.136-2 Os08g0320200 OSNPB_080320200,OJ1136_D12.119-1 Os08g0320200 P0465H09.136-1 OSNPB_080320200,Os08g0492000 Os08g0492000 OSNPB_080492000 P0605H02.51 P0686H11.11 ENOG411DZ4B STR4A Q56XR7 STR4A_ARATH Rhodanese-like domain-containing protein 4A, chloroplastic (Sulfurtransferase 4A) (AtStr4a) 29011 Rhodanese-like domain-containing protein 4A, chloroplastic (Sulfurtransferase 4A) (AtStr4a) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; chitin catabolic process [GO:0006032] locus:2094488; AT3G25480 Inherit from KOG: Retrotransposon protein Os01g0889800 protein (cDNA clone:001-037-E07, full insert sequence) (cDNA clone:J023042J18, full insert sequence) Q0JH17 Q0JH17_ORYSJ Os01g0889800 Os01g0889800 OSNPB_010889800 ENOG411DZ4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain Os01g0829100 protein (Protein kinase-like) (cDNA clone:001-027-G02, full insert sequence) Q941V9 Q941V9_ORYSJ Os01g0829100 Os01g0829100 B1088C09.29 OsJ_03944 OSNPB_010829100 P0446G04.2 ENOG411DZ4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DELLA protein NA NA NA NA NA NA NA ENOG411DZ48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0839900 protein (Protein kinase domain containing protein, expressed),Os03g0839700 protein (Fragment) Q6AVR9,A0A0P0W5F2 Q6AVR9_ORYSJ,A0A0P0W5F2_ORYSJ Os03g0839900 LOC_Os03g62340 Os03g0839900 OSJNBa0075M12.3 OSNPB_030839900,Os03g0839700 OSNPB_030839700 ENOG411DZ49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os03g0145600 protein (Putative zfwd1 protein) (Putative zfwd1 protein with similarity to myosin heavy chain proteins) (Zfwd1 protein, putative, expressed) (cDNA clone:002-100-D01, full insert sequence),Os03g0145775 protein (Fragment) Q8H033,A0A0P0VSZ5 Q8H033_ORYSJ,A0A0P0VSZ5_ORYSJ OJ1172F09.10 LOC_Os03g05210 Os03g0145600 OsJ_09391 OSJNBa0067N01.22 OSNPB_030145600,Os03g0145775 OSNPB_030145775 ENOG411DZ46 VLN1 O81643,A0A1P8AZB7,F4ILN8,Q2V445 VILI1_ARATH,A0A1P8AZB7_ARATH,F4ILN8_ARATH,Q2V445_ARATH Villin-1,Villin-like 1 FUNCTION: Binds actin and actin filament bundles in a Ca(2+)/calmodulin-insensitive manner, but is unable to sever, cap, and nucleate actin filament formation in vitro. Does not protect individual filaments from severing by VLN3 (AC O81645). {ECO:0000269|PubMed:10631247, ECO:0000269|PubMed:15659626, ECO:0000269|PubMed:20807878}. 102950,101054,105865,103121 Villin-1,Villin-like 1 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693],actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017],actin cytoskeleton [GO:0015629]; actin binding [GO:0003779]; actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017]; negative regulation of actin filament depolymerization [GO:0030835] TISSUE SPECIFICITY: Expressed in all tissues examined. Mainly detected in the vascular tissue and the pericycle of roots and in the vasculature of leaves. Not expressed in the root cap. {ECO:0000269|PubMed:10631247, ECO:0000269|PubMed:20807878}. locus:2052075; AT2G29890 GEL Villin-1 Q0DKN3 VLN1_ORYSJ VLN1 LOC_Os05g06110 Os05g0153000 OsJ_17157 OSNPB_050153000 FUNCTION: Ca(2+)-independent actin-binding protein. Binds actin microfilaments (MFs). Involved in actin filament bundling, severing and capping. Caps the barbed end of actin filaments and protects them from disassembly. Promotes VLN3-mediated MF severing. {ECO:0000269|PubMed:20807878}. ENOG411DZ47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) AAA1 (ATPase 2, putative, expressed) (Os03g0802500 protein) (Putative AAA-type ATPase) (cDNA clone:001-037-A09, full insert sequence) (cDNA clone:J023061A01, full insert sequence),Os03g0802600 protein Q84SZ7,A0A0P0W490 Q84SZ7_ORYSJ,A0A0P0W490_ORYSJ Os03g0802500 AAA1 LOC_Os03g58790 Os03g0802500 OSJNBa0087C10.14 OSNPB_030802500,Os03g0802600 OSNPB_030802600 ENOG411DZ44 O49567,F4I8X6,F4JIP9,Q9SYB0 TAUE6_ARATH,TAUE1_ARATH,TAUE5_ARATH,TAUE2_ARATH Sulfite exporter TauE/SafE family protein 6,Sulfite exporter TauE/SafE family protein 1,Sulfite exporter TauE/SafE family protein 5,Sulfite exporter TauE/SafE family protein 2 47456,48954,48580,50072 Sulfite exporter TauE/SafE family protein 6,Sulfite exporter TauE/SafE family protein 1,Sulfite exporter TauE/SafE family protein 5,Sulfite exporter TauE/SafE family protein 2 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2127348;,locus:2200061;,locus:2127343;,locus:2195773; AT4G21260,AT1G11540,AT4G21250,AT1G61740 Sulfite exporter TauE/SafE Os01g0786800 protein (Fragment),Membrane protein-like (Os01g0786700 protein) Q0JIP0,Q5ZAL4 Q0JIP0_ORYSJ,Q5ZAL4_ORYSJ Os01g0786800 Os01g0786800 OSNPB_010786800,Os01g0786700 B1070A12.47 OsJ_03712 OSNPB_010786700 P0415A04.14 ENOG411DZ42 A1A6I8,F4JML2,A0A1P8B7P9,A0A1P8B7Q0,A0A1P8B7Q1 A1A6I8_ARATH,F4JML2_ARATH,A0A1P8B7P9_ARATH,A0A1P8B7Q0_ARATH,A0A1P8B7Q1_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At4g16765),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 27747,29080,26428,22583,20566 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At4g16765),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:504955434; AT4G16765 2OG-Fe(II) oxygenase superfamily Os10g0522900 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (Putative anthocyanidin hydroxylase) (Putative gibberellin 20-oxidase) (cDNA clone:J013151N02, full insert sequence),Os10g0523100 protein (Putative gibberellin 20-oxidase),Os10g0522900 protein (Fragment) Q9AUY4,Q8H0A8,A0A0P0XWD6 Q9AUY4_ORYSJ,Q8H0A8_ORYSJ,A0A0P0XWD6_ORYSJ LOC_Os10g37880 Os10g0522900 OsJ_32203 OSJNBb0028C01.25 OSNPB_100522900,Os10g0523100 LOC_Os10g37910 Os10g0523100 OsJ_32205 OSNPB_100523100,Os10g0522900 OSNPB_100522900 ENOG411DZ43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os03g0632732 protein,Expressed protein (Os03g0163400 protein),Os02g0604200 protein A3AKM6,Q10RD3,A0A0P0VLD1 A3AKM6_ORYSJ,Q10RD3_ORYSJ,A0A0P0VLD1_ORYSJ Os03g0632732 OsJ_11818 OSNPB_030632732,Os03g0163400 LOC_Os03g06750 OSNPB_030163400,Os02g0604200 OSNPB_020604200 ENOG411DZ40 FAD3 P48623,F4ILQ4 FAD3E_ARATH,F4ILQ4_ARATH Acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum (EC 1.14.19.25) (Omega-3 fatty acid desaturase 3, endoplasmic reticulum),Fatty acid desaturase 3 Abnormal fatty acid composition-C. Somerville-1993 FUNCTION: Microsomal (ER) omega-3 fatty acid desaturase introduces the third double bond in the biosynthesis of 18:3 fatty acids, important constituents of plant membranes. It is thought to use cytochrome b5 as an electron donor and to act on fatty acids esterified to phosphatidylcholine and, possibly, other phospholipids. {ECO:0000269|PubMed:8029334, ECO:0000269|PubMed:8102138}. PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. {ECO:0000269|PubMed:8029334}. ARA:AT2G29980-MONOMER;MetaCyc:AT2G29980-MONOMER; 1.14.19.25 44077,32903 Acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum (EC 1.14.19.25) (Omega-3 fatty acid desaturase 3, endoplasmic reticulum),Fatty acid desaturase 3 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; omega-3 fatty acid desaturase activity [GO:0042389]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; response to karrikin [GO:0080167]; unsaturated fatty acid biosynthetic process [GO:0006636],integral component of membrane [GO:0016021]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Abundant in leaves and seedlings. Barely detectable in root tissue. {ECO:0000269|PubMed:8029334}. locus:2005508; AT2G29980 Omega-3 fatty acid desaturase NA NA NA NA NA NA NA ENOG411E6IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: IQ motif and ubiquitin domain containing NA NA NA NA NA NA NA ENOG411EJB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DT8D F4I4Q1 F4I4Q1_ARATH Protein MAK16 homolog 35760 Protein MAK16 homolog nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470] locus:2028070; AT1G23280 Mak16 protein C-terminal region Protein MAK16 homolog,Os07g0271600 protein Q7XIT8,A0A0P0X4Q8 Q7XIT8_ORYSJ,A0A0P0X4Q8_ORYSJ OJ1001_C01.111 Os07g0270900 OsJ_23802 OSNPB_070270900 P0685B06.33,Os07g0271600 OSNPB_070271600 ENOG411DT8B TAF7 B9DG24 TAF7_ARATH Transcription initiation factor TFIID subunit 7 (TBP-associated factor 7) (AtTAF7) FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 28085 Transcription initiation factor TFIID subunit 7 (TBP-associated factor 7) (AtTAF7) transcription factor TFIID complex [GO:0005669]; histone acetyltransferase binding [GO:0035035]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2035656; AT1G55300 transcription initiation factor TFIID subunit Os05g0347000 protein (cDNA clone:001-101-F01, full insert sequence),Os01g0648500 protein (Fragment) Q5W6Q8,A0A0P0V621 Q5W6Q8_ORYSJ,A0A0P0V621_ORYSJ Os05g0347000 Os05g0347000 B1164G01.8 OsJ_18168 OSNPB_050347000,Os01g0648500 OSNPB_010648500 ENOG411DT86 FDH Q570B4 KCS10_ARATH 3-ketoacyl-CoA synthase 10 (KCS-10) (EC 2.3.1.199) (Protein FIDDLEHEAD) (Very long-chain fatty acid condensing enzyme 10) (VLCFA condensing enzyme 10) DISRUPTION PHENOTYPE: In additions to several malformations due to organ fusion, plants lacking FDH demonstrate an enhanced cell wall permeability, reduced trichome formation, and are female sterile. {ECO:0000269|PubMed:10559443}. Fused leaves and floral organs; Abnormal trichomes-H. Saedler-1999 FUNCTION: Contributes to cuticular wax and suberin biosynthesis. Prevents the postgenital fusion of epiderm cells in organs in contact, as well as ectopic pollen hydration and germination. Required during ovules formation. May regulate an epidermis-specific developmental program during gynoecial ontogeny. {ECO:0000269|PubMed:10559443, ECO:0000269|PubMed:10655527, ECO:0000269|PubMed:1644226, ECO:0000269|PubMed:8416837, ECO:0000269|PubMed:9299123, ECO:0000269|PubMed:9611177}. MISCELLANEOUS: Called 'FIDDLEHEAD' because of the shape of mutants, in which adhering floral buds cause curling of inflorescence, resulting in structures reminiscent of fern fiddlehead. PATHWAY: Lipid metabolism; fatty acid biosynthesis. 2.3.1.199 61961 3-ketoacyl-CoA synthase 10 (KCS-10) (EC 2.3.1.199) (Protein FIDDLEHEAD) (Very long-chain fatty acid condensing enzyme 10) (VLCFA condensing enzyme 10) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to karrikin [GO:0080167]; response to light stimulus [GO:0009416] DEVELOPMENTAL STAGE: Expressed in prefusion carpel abaxial and adaxial epidermis. Accumulates in ovule primordia, but restricted to chalaza in mature ovules. Also present in cells of stigmatic papillae, at the margins of ovules, and around the embryo sac. {ECO:0000269|PubMed:10559443, ECO:0000269|PubMed:10655527}. TISSUE SPECIFICITY: Mostly expressed in epidermal cells of floral and vegetative meristems and, to a lower extent, of leaves and coleoptiles, especially in young tissues. Also present in trichomes and phloem (PubMed:10559443, PubMed:10655527). Expressed in siliques, seedlings, flowers and leaves (PubMed:18465198). {ECO:0000269|PubMed:10559443, ECO:0000269|PubMed:10655527, ECO:0000269|PubMed:18465198}. locus:2057706; AT2G26250 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-),Os03g0181500 protein (Fragment) Q10QW1,A0A0P0VTU3 Q10QW1_ORYSJ,A0A0P0VTU3_ORYSJ LOC_Os03g08360 Os03g0181500 OSNPB_030181500,Os03g0181500 OSNPB_030181500 ENOG411DT89 CEF Q9M081,Q9M291,F4J1Y2 SC24B_ARATH,SC24C_ARATH,F4J1Y2_ARATH Protein transport protein Sec24-like At4g32640,Protein transport protein Sec24-like CEF,Uncharacterized protein FUNCTION: Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity). {ECO:0000250}. R-ATH-204005;R-ATH-5694530;R-ATH-983170; 116322,117691,114680 Protein transport protein Sec24-like At4g32640,Protein transport protein Sec24-like CEF,Uncharacterized protein COPII vesicle coat [GO:0030127]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi membrane [GO:0000139]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886],COPII vesicle coat [GO:0030127]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi membrane [GO:0000139]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; response to oxidative stress [GO:0006979],COPII vesicle coat [GO:0030127]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886] locus:2100202; AT4G32640,AT3G44340 protein transport protein Sec24-like Os11g0482100 protein (Fragment),Os12g0430000 protein (Fragment) Q0ISQ1,A0A0P0Y9Y8 Q0ISQ1_ORYSJ,A0A0P0Y9Y8_ORYSJ Os11g0482100 OSNPB_110482100,Os12g0430000 OSNPB_120430000 ENOG411EJAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Leo1 Paf1 RNA polymerase II complex component homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EJAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0650300 protein) Q10FZ4 Q10FZ4_ORYSJ Os03g0650300 LOC_Os03g44750 OSNPB_030650300 ENOG411EJAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os09g0440000 protein (Fragment),Os01g0114800 protein (Fragment),Os06g0707800 protein (Fragment),Os06g0679900 protein,Os05g0533350 protein,Os02g0657500 protein,Os11g0568725 protein,Os03g0794050 protein Q0J1H2,A0A0P0UY30,A0A0P0X0Y7,A0A0P0X0H8,A0A0P0WPR9,A0A0P0VMH3,A0A0P0Y3P3,A0A0P0W440 Q0J1H2_ORYSJ,A0A0P0UY30_ORYSJ,A0A0P0X0Y7_ORYSJ,A0A0P0X0H8_ORYSJ,A0A0P0WPR9_ORYSJ,A0A0P0VMH3_ORYSJ,A0A0P0Y3P3_ORYSJ,A0A0P0W440_ORYSJ Os09g0440000 OSNPB_090440000,Os01g0114800 OSNPB_010114800,Os06g0707800 OSNPB_060707800,Os06g0679900 OSNPB_060679900,Os05g0533350 OSNPB_050533350,Os02g0657500 OSNPB_020657500,Os11g0568725 OSNPB_110568725,Os03g0794050 OSNPB_030794050 ENOG411EJAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50S ribosomal protein 5 NA NA NA NA NA NA NA ENOG411EJAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411EJAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EJAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oleosin NA NA NA NA NA NA NA ENOG411EJAS Q1G3K4,Q570U1 Q1G3K4_ARATH,Q570U1_ARATH Uncharacterized protein 12003,12132 Uncharacterized protein locus:4010713925; AT4G33467 NA NA NA NA NA NA NA NA ENOG411EJAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0278000 protein Q6H5I7 Q6H5I7_ORYSJ Os09g0278000 OSNPB_090278000 P0701E06.13 ENOG411EJAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJA4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GCC2 and GCC3 NA NA NA NA NA NA NA ENOG411EJA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0222200 protein A0A0P0VUW0 A0A0P0VUW0_ORYSJ Os03g0222200 OSNPB_030222200 ENOG411EJA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Viral movement protein (MP) NA NA NA NA NA NA NA ENOG411EJA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DVPS SUN1,SUN2 Q9FF75,Q9SG79 SUN1_ARATH,SUN2_ARATH SUN domain-containing protein 1 (AtSUN1),SUN domain-containing protein 2 (AtSUN2) DISRUPTION PHENOTYPE: No visible phenotype. When associated with SUN2 disruption, abnormal nuclear shape, rounded instead of elongated, in some cells (e.g. mature root hairs) but also numerous meiotic defects namely a delay in the progression of meiosis, absence of full synapsis and a reduction in the mean cell chiasma frequency. {ECO:0000269|PubMed:21294795, ECO:0000269|PubMed:25412930}.,DISRUPTION PHENOTYPE: No visible phenotype. When associated with SUN1 disruption, abnormal nuclear shape in some cells such as mature root hairs but also numerous meiotic defects namely a delay in the progression of meiosis, absence of full synapsis and a reduction in the mean cell chiasma frequency. {ECO:0000269|PubMed:21294795, ECO:0000269|PubMed:25412930}. FUNCTION: Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (PubMed:24667841, PubMed:25759303). Required for the maintenance and/or formation of polarized nuclear shape in root hairs (PubMed:21294795, PubMed:25759303). Modulates the anchoring and mobility of WIP proteins and RANGAP1 in the nuclear envelope (NE) (PubMed:22270916). In association with SUN2, may be involved in telomere attachment to nuclear envelope in the prophase of meiosis (PubMed:25412930). As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (PubMed:25759303). {ECO:0000269|PubMed:21294795, ECO:0000269|PubMed:22270916, ECO:0000269|PubMed:24667841, ECO:0000269|PubMed:25412930, ECO:0000269|PubMed:25759303}.,FUNCTION: Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (PubMed:24667841). Required for the maintenance and/or formation of polarized nuclear shape in root hairs (PubMed:21294795). Modulates the anchoring and mobility of WIP proteins in the nuclear envelope (NE) (PubMed:22270916). In association with SUN1, may be involved in telomere attachment to nuclear envelope in the prophase of meiosis (PubMed:25412930). As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (PubMed:25759303). {ECO:0000269|PubMed:21294795, ECO:0000269|PubMed:22270916, ECO:0000269|PubMed:24667841, ECO:0000269|PubMed:25412930, ECO:0000269|PubMed:25759303}. 51502,49940 SUN domain-containing protein 1 (AtSUN1),SUN domain-containing protein 2 (AtSUN2) cytoskeleton [GO:0005856]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; nuclear inner membrane [GO:0005637]; phragmoplast [GO:0009524]; protein anchor [GO:0043495]; protein self-association [GO:0043621]; meiotic attachment of telomere to nuclear envelope [GO:0070197]; nucleus organization [GO:0006997]; protein heterooligomerization [GO:0051291]; protein homooligomerization [GO:0051260]; protein localization to nuclear envelope [GO:0090435]; regulation of establishment or maintenance of cell polarity regulating cell shape [GO:2000769],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; nuclear inner membrane [GO:0005637]; phragmoplast [GO:0009524]; spindle [GO:0005819]; protein anchor [GO:0043495]; protein self-association [GO:0043621]; meiotic attachment of telomere to nuclear envelope [GO:0070197]; nucleus organization [GO:0006997]; protein heterooligomerization [GO:0051291]; protein homooligomerization [GO:0051260]; protein localization to nuclear envelope [GO:0090435] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons and leaves and inflorescences. {ECO:0000269|PubMed:19807882, ECO:0000269|PubMed:21294795}. locus:2175354;,locus:2103182; AT5G04990,AT3G10730 Sad1 UNC-like C-terminal domain containing protein Os01g0267600 protein (Unc-84 homolog B-like),Os09g0471450 protein,Os05g0270200 protein (Fragment) Q5NBL8,B9G443,A0A0P0WK78 Q5NBL8_ORYSJ,B9G443_ORYSJ,A0A0P0WK78_ORYSJ Os01g0267600 Os01g0267600 OsJ_01226 OSNPB_010267600 P0011D01.17,Os09g0471450 OsJ_29712 OSNPB_090471450,Os05g0270200 OSNPB_050270200 ENOG411DVPP CLPX1,CLPX3 Q9FK07,Q66GN9 CLPX1_ARATH,CLPX3_ARATH CLP protease regulatory subunit CLPX1, mitochondrial,CLP protease regulatory subunit CLPX3, mitochondrial FUNCTION: ATP-dependent specificity component of the mitochondrial Clp protease (PubMed:11352464). It directs the protease to specific substrates (By similarity). Can perform chaperone functions in the absence of ClpP (By similarity). {ECO:0000250|UniProtKB:B1J693, ECO:0000269|PubMed:11352464}.,FUNCTION: ATP-dependent specificity component of the mitochondrial Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. {ECO:0000250|UniProtKB:B1J693}. 61964,71540 CLP protease regulatory subunit CLPX1, mitochondrial,CLP protease regulatory subunit CLPX3, mitochondrial mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; unfolded protein binding [GO:0051082]; protein catabolic process [GO:0030163]; protein folding [GO:0006457]; proteolysis [GO:0006508],mitochondrial matrix [GO:0005759]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; unfolded protein binding [GO:0051082]; protein catabolic process [GO:0030163]; protein folding [GO:0006457]; proteolysis [GO:0006508] TISSUE SPECIFICITY: Constitutively expressed in leaves, shoots, roots and flowers. {ECO:0000269|PubMed:11352464}. locus:2154257;,locus:2006942; AT5G53350,AT1G33360 ATP-dependent Clp protease ATP-binding subunit Os02g0293500 protein (Fragment),Os02g0564400 protein A0A0P0VHW4,A0A0N7KFI2 A0A0P0VHW4_ORYSJ,A0A0N7KFI2_ORYSJ Os02g0293500 OSNPB_020293500,Os02g0564400 OSNPB_020564400 ENOG411DVPN PUB23,PUB22 Q84TG3,Q9SVC6 PUB23_ARATH,PUB22_ARATH E3 ubiquitin-protein ligase PUB23 (EC 2.3.2.27) (Plant U-box protein 23) (RING-type E3 ubiquitin transferase PUB23) (U-box domain-containing protein 23),E3 ubiquitin-protein ligase PUB22 (EC 2.3.2.27) (Plant U-box protein 22) (RING-type E3 ubiquitin transferase PUB22) (U-box domain-containing protein 22) DISRUPTION PHENOTYPE: Increased tolerance to drought stress. {ECO:0000269|PubMed:18664614}. This triple mutant does not exhibit any obvious constitutive defense signaling phenotypes and it has normal fertility compared to wild-type plants. However it has an enhanced relative oxidative burst compared to wild type plants in response to flg22 chitin and the conserved elf18 epitope from a bacterial transcription factor. MPK3 transcripts remain elevated for longer in the mutant than in wild-type seedlings though the MPK3 protein does not appear to have altered protein stability in this triple mutant.When challenged with the bacterial pathogen Pst the triple mutant allows ~30 times less bacterial growth than wild-type plants. It is also less susceptible to a biotrophic oomycete.,Resistant to severe drought stress. Mutant plants recovered from water withdrawl to a greater extent than wild type. Resistant to drought-W. Kim-2008,Resistant to drought-W. Taek Kim-2008 FUNCTION: E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24. {ECO:0000269|PubMed:18664614, ECO:0000269|PubMed:18771922}.,FUNCTION: E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB23 and PUB24. Regulates EXO70B2 ubiquitination and degradation via the 26S proteasome to attenuate PAMP-induced signaling (PubMed:23170036). {ECO:0000269|PubMed:18664614, ECO:0000269|PubMed:18771922, ECO:0000269|PubMed:23170036}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000269|PubMed:18664614, ECO:0000269|PubMed:18771922, ECO:0000269|PubMed:23170036}. 6.3.2.19; 2.3.2.27 45823,48877 E3 ubiquitin-protein ligase PUB23 (EC 2.3.2.27) (Plant U-box protein 23) (RING-type E3 ubiquitin transferase PUB23) (U-box domain-containing protein 23),E3 ubiquitin-protein ligase PUB22 (EC 2.3.2.27) (Plant U-box protein 22) (RING-type E3 ubiquitin transferase PUB22) (U-box domain-containing protein 22) cytosol [GO:0005829]; ubiquitin-protein transferase activity [GO:0004842]; defense response [GO:0006952]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567]; response to chitin [GO:0010200]; response to water deprivation [GO:0009414] locus:2039265;,locus:2079964; AT2G35930,AT3G52450 E3 ubiquitin-protein ligase RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q7XTM1 Q7XTM1_ORYSJ Os04g0686000 Os04g0686000 OsJ_16699 OSJNBa0070M12.4 OSNPB_040686000 ENOG411DRZ8 AAT1,AACT1 Q9FIK7,Q8S4Y1,F4JYM8 THIC2_ARATH,THIC1_ARATH,F4JYM8_ARATH Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2),Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (Protein EMBRYO DEFECTIVE 1276),Thiolase family protein Embryo defective; Gametophyte defective (inferred)-D. Meinke-2002 PATHWAY: Metabolic intermediate biosynthesis; (R)-mevalonate biosynthesis; (R)-mevalonate from acetyl-CoA: step 1/3. R-ATH-70895;R-ATH-77108;R-ATH-77111; 2.3.1.9; 2.3.1.9 43292,41412,42981 Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2),Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (Protein EMBRYO DEFECTIVE 1276),Thiolase family protein cytosol [GO:0005829]; acetyl-CoA C-acetyltransferase activity [GO:0003985]; metal ion binding [GO:0046872]; fatty acid beta-oxidation [GO:0006635],cytosol [GO:0005829]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; acetyl-CoA C-acetyltransferase activity [GO:0003985]; metal ion binding [GO:0046872]; fatty acid beta-oxidation [GO:0006635]; isoprenoid biosynthetic process [GO:0008299]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; sterol metabolic process [GO:0016125],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; metabolic process [GO:0008152] locus:2160887;,locus:2164778; AT5G47720,AT5G48230 acetyl-CoA acetyltransferase cytosolic Os09g0252100 protein (Putative acetyl-CoA C-acyltransferase) (cDNA clone:J033096I21, full insert sequence),Os01g0110400 protein (Putative acetoacetyl-coenzyme A thiolase) (cDNA clone:J033121P11, full insert sequence),Os09g0252100 protein (Fragment) Q6K3Z3,Q9ASK5,A0A0N7KQF3 Q6K3Z3_ORYSJ,Q9ASK5_ORYSJ,A0A0N7KQF3_ORYSJ Os09g0252100 OsJ_28542 OSNPB_090252100 P0574F11.13,Os01g0110400 Os01g0110400 OsJ_00082 OSNPB_010110400 P0439B06.9,Os09g0252100 OSNPB_090252100 ENOG411DRZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inositol polyphosphate kinase NA NA NA NA NA NA NA ENOG411DRZ1 Q9CAT1,F4JT73 Q9CAT1_ARATH,F4JT73_ARATH Glycosyltransferase (Putative glycosyl transferase; 61173-59713) (UDP-Glycosyltransferase superfamily protein),Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) 55149,57930 Glycosyltransferase (Putative glycosyl transferase; 61173-59713) (UDP-Glycosyltransferase superfamily protein),Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2032702;,locus:2122920; AT1G73160,AT4G19460 Glycosyl transferases group 1 Glycosyl transferase family 1 protein-like (Os01g0653200 protein) (cDNA clone:002-173-D01, full insert sequence) Q5VPB6 Q5VPB6_ORYSJ Os01g0653200 OSJNBb0006H05.7 OSJNBb0032K15.26 OSNPB_010653200 ENOG411DRZ2 A0A1P8APC3,F4HQD3 A0A1P8APC3_ARATH,F4HQD3_ARATH Putative methyltransferase family protein R-ATH-8876725; 35308,35380 Putative methyltransferase family protein methyltransferase activity [GO:0008168] locus:504956295; AT1G79915 Putative methyltransferase NA NA NA NA NA NA NA ENOG411DRZ3 MCB17.18 F4J099 F4J099_ARATH RNA recognition motif XS domain protein 57070 RNA recognition motif XS domain protein nucleolar ribonuclease P complex [GO:0005655]; gene silencing by RNA [GO:0031047] locus:2087867; AT3G22430 XS domain Os03g0159200 protein (XS domain containing protein, expressed) (cDNA clone:001-023-C08, full insert sequence) Q10RH2 Q10RH2_ORYSJ LOC_Os03g06340 Os03g0159200 OSNPB_030159200 ENOG411DRZ4 T26I12.70 Q9M3D0,Q8RXN7,O80628,Q8S8R4 Q9M3D0_ARATH,Q8RXN7_ARATH,O80628_ARATH,Q8S8R4_ARATH Alpha/beta-Hydrolases superfamily protein (Esterase/lipase/thioesterase family protein) (Lipase-like protein),Alpha/beta-Hydrolases superfamily protein (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein (Putative phospholipase; alternative splicing isoform),Alpha/beta-Hydrolases superfamily protein (Putative phospholipase) (Putative phospholipase; alternative splicing isoform, supported by cDNA: Ceres:124576) ARA:GQT-389-MONOMER;,ARA:GQT-1283-MONOMER;,ARA:AT2G39410-MONOMER; 36232,35704,36461,13751 Alpha/beta-Hydrolases superfamily protein (Esterase/lipase/thioesterase family protein) (Lipase-like protein),Alpha/beta-Hydrolases superfamily protein (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein (Putative phospholipase; alternative splicing isoform),Alpha/beta-Hydrolases superfamily protein (Putative phospholipase) (Putative phospholipase; alternative splicing isoform, supported by cDNA: Ceres:124576) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; lipase activity [GO:0016298]; lipid metabolic process [GO:0006629],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629],hydrolase activity [GO:0016787] locus:2100606;,locus:2039677;,locus:2039822; AT3G55190,AT2G39420,AT2G39410 monoglyceride Hydrolase, alpha/beta fold family protein (Hydrolase, alpha/beta fold family protein, expressed) (Os11g0100600 protein) (Os12g0100500 protein),Os12g0262700 protein (Phospholipase, putative, expressed) Q2QYZ9,Q2QUI2 Q2QYZ9_ORYSJ,Q2QUI2_ORYSJ Os11g0100600 LOC_Os11g01040 LOC_Os12g01030 Os11g0100600 Os12g0100500 OsJ_32623 OSNPB_110100600 OSNPB_120100500,LOC_Os12g16180 Os12g0262700 OsJ_17634 OSNPB_120262700 ENOG411DRZ5 Q8L9G7 APH1_ARATH Gamma-secretase subunit APH1-like FUNCTION: Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. {ECO:0000250}. 27536 Gamma-secretase subunit APH1-like endoplasmic reticulum [GO:0005783]; gamma-secretase complex [GO:0070765]; integral component of plasma membrane [GO:0005887]; endopeptidase activity [GO:0004175]; Notch signaling pathway [GO:0007219]; positive regulation of catalytic activity [GO:0043085]; protein processing [GO:0016485] locus:2061265; AT2G31440 Gamma-secretase subunit Os02g0272600 protein (Presenilin stabilization factor-like) (cDNA clone:001-038-G08, full insert sequence) (cDNA clone:006-310-G12, full insert sequence),Os02g0272600 protein Q6EST3,A0A0P0VHJ3 Q6EST3_ORYSJ,A0A0P0VHJ3_ORYSJ P0521F09.23-1 Os02g0272600 OsJ_06210 OSNPB_020272600,Os02g0272600 OSNPB_020272600 ENOG411DRZ6 CRT3 O04153,F4HW30,F4HW29 CALR3_ARATH,F4HW30_ARATH,F4HW29_ARATH Calreticulin-3 (Protein PRIORITY IN SWEET LIFE 1),Calreticulin 3 DISRUPTION PHENOTYPE: Loss of seedling growth inhibition in response to the pathogen-associated molecular pattern (PAMP) elf18 and increased susceptibility to phytopathogenic bacteria. {ECO:0000269|PubMed:19717464}. compromised in EFR but not FLS2 signaling. Resistant to elf18 (bacterial defense inducer)-S. Persson-2010 FUNCTION: Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER. Required for elongation factor Tu receptor (EFR) accumulation and for EFR, but not flagellin-sensing 2 (FLS2) signaling. {ECO:0000269|PubMed:19717464, ECO:0000269|PubMed:19763087}. R-ATH-901042; 49844,46825,43595 Calreticulin-3 (Protein PRIORITY IN SWEET LIFE 1),Calreticulin 3 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; endoplasmic reticulum membrane [GO:0005789]; calcium ion binding [GO:0005509]; carbohydrate binding [GO:0030246]; unfolded protein binding [GO:0051082]; anthocyanin-containing compound metabolic process [GO:0046283]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626]; protein folding [GO:0006457],endoplasmic reticulum [GO:0005783]; calcium ion binding [GO:0005509]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2201816; AT1G08450 Calreticulin Os05g0507300 protein (Fragment),Os01g0895600 protein Q0DGW8,A0A0P0VBP1 Q0DGW8_ORYSJ,A0A0P0VBP1_ORYSJ Os05g0507300 Os05g0507300 OSNPB_050507300,Os01g0895600 OSNPB_010895600 ENOG411DRZ7 PER48 O81755 PER48_ARATH Putative Peroxidase 48 (Atperox P48) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G33870-MONOMER; 1.11.1.7 44792 Putative Peroxidase 48 (Atperox P48) (EC 1.11.1.7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] AT4G33870 peroxidase Peroxidase (EC 1.11.1.7) Q5U1S5 Q5U1S5_ORYSJ prx18 Os01g0712800 OsJ_03231 OSNPB_010712800 ENOG411DRZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLDc Os02g0754000 protein (Oxidation protection protein-like) (cDNA clone:006-202-G05, full insert sequence),Nucleolar protein-like (Os06g0221100 protein) (cDNA clone:J033115N17, full insert sequence),Os02g0754000 protein (cDNA clone:J033035I12, full insert sequence) Q6Z6A4,Q67VZ2,B7ERM9 Q6Z6A4_ORYSJ,Q67VZ2_ORYSJ,B7ERM9_ORYSJ P0627E03.7-1 OJ1288_G09.29-1 Os02g0754000 OSNPB_020754000,Os06g0221100 OSNPB_060221100 P0516A04.13,Os02g0754000 OSNPB_020754000 ENOG411DRZY PER5,PER4 Q9M9Q9,Q9LE15 PER5_ARATH,PER4_ARATH Peroxidase 5 (Atperox P5) (EC 1.11.1.7),Peroxidase 4 (Atperox P4) (EC 1.11.1.7) (ATP46) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G14550-MONOMER;,ARA:AT1G14540-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35007,34411 Peroxidase 5 (Atperox P5) (EC 1.11.1.7),Peroxidase 4 (Atperox P4) (EC 1.11.1.7) (ATP46) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; cellular response to hypoxia [GO:0071456]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2012607;,locus:2012597; AT1G14550,AT1G14540 lignin-forming anionic peroxidase-like NA NA NA NA NA NA NA ENOG411DRZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoribosyl transferase domain NA NA NA NA NA NA NA ENOG411DRZP FLXL3 Q9C717 FLXL3_ARATH Protein FLX-like 3 (AtFLXL3) DISRUPTION PHENOTYPE: No suppression of FRI activity. {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. FUNCTION: Has no transcriptional activation activity. {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. 33101 Protein FLX-like 3 (AtFLXL3) cell differentiation [GO:0030154]; flower development [GO:0009908] locus:2035751; AT1G55170 NA Myosin-like protein, putative, expressed (Os12g0193100 protein) (cDNA clone:J013157P20, full insert sequence) (cDNA clone:J023002H11, full insert sequence) (cDNA clone:J033033H14, full insert sequence) Q2QWJ9 Q2QWJ9_ORYSJ Os12g0193100 LOC_Os12g09089 OSNPB_120193100 ENOG411DRZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411DRZR MSBP2,MSBP1 Q9M2Z4,Q9XFM6,F4KG44 MSBP2_ARATH,MSBP1_ARATH,F4KG44_ARATH Membrane steroid-binding protein 2 (AtMP2) (Membrane-associated progesterone-binding protein 3) (AtMAPR3),Membrane steroid-binding protein 1 (AtMP1) (Membrane-associated progesterone-binding protein 5) (AtMAPR5),Membrane steroid binding protein 1 FUNCTION: MSBP1 can bind to multiple steroid compounds with different affinities. Negatively regulates cell elongation and brassinosteroid signaling. May act as a coreceptor with BAK1 and enhances its endocytosis. {ECO:0000269|PubMed:19532123}. MISCELLANEOUS: Regulated by both phytochromes and cryptochromes. R-ATH-6798695; 25382,24405,19639 Membrane steroid-binding protein 2 (AtMP2) (Membrane-associated progesterone-binding protein 3) (AtMAPR3),Membrane steroid-binding protein 1 (AtMP1) (Membrane-associated progesterone-binding protein 5) (AtMAPR5),Membrane steroid binding protein 1 chloroplast thylakoid membrane [GO:0009535]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; protein domain specific binding [GO:0019904]; steroid binding [GO:0005496],endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; steroid binding [GO:0005496]; negative regulation of cell growth [GO:0030308],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Expressed under darkness or light during initial stages of germination. Highly expressed in hypocotyls during days 3 to 7 after germination under light but almost undetectable in darkness. TISSUE SPECIFICITY: Expressed in cotyledons, stems, roots, leaves, flower and silique stalks, pistils and stigmas, but not in anthers. {ECO:0000269|PubMed:15608331}. locus:2099453;,locus:2145101; AT3G48890,AT5G52240 membrane steroid-binding protein Membrane steroid-binding protein 1 (OsMSBP1) (OsMSBP2) Q9FVZ7 MSBP1_ORYSJ MSBP1 Os10g0502600 LOC_Os10g35870 OSJNBb0073N24.4 FUNCTION: Binds multiple steroid compounds (By similarity). May act as a coreceptor with SERL2 and enhance its endocytosis (Probable). {ECO:0000250|UniProtKB:Q9XFM6, ECO:0000305|PubMed:25711711}. ENOG411DRZS F4JTM0 F4JTM0_ARATH Transport/golgi organization-like protein (DUF833) 31095 Transport/golgi organization-like protein (DUF833) locus:2121743; AT4G38260 Ser Thr-rich protein T10 in DGCR Os09g0323500 protein (cDNA clone:J023109A10, full insert sequence),Os04g0564500 protein Q6K2D5,A0A0P0WDK1 Q6K2D5_ORYSJ,A0A0P0WDK1_ORYSJ Os09g0323500 OsJ_28864 OSJNBb0024J13.25 OSNPB_090323500,Os04g0564500 OSNPB_040564500 ENOG411DRZT HISN3 O82782 HIS3_ARATH 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic (EC 5.3.1.16) (5-proFAR isomerase) (BBM II) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (Protein ALBINO AND PALE GREEN 10) (Protein HISTIDINE BIOSYNTHESIS 3) Pale green cotyledons and true leaves. Development of true leaves was delayed fro 2 days in the mutant plants. Shape of the true leaves was small narrow with some serrations. Null: Embryo defective; Gametophyte defective (inferred); Knockdown: Pigment defective embryo-D. Meinke-2007 PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 4/9. ARA:AT2G36230-MONOMER;MetaCyc:AT2G36230-MONOMER; 5.3.1.16; Biosynthesis of secondary metabolites (01110),Histidine metabolism (00340),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 5.3.1.16 33365 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic (EC 5.3.1.16) (5-proFAR isomerase) (BBM II) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (Protein ALBINO AND PALE GREEN 10) (Protein HISTIDINE BIOSYNTHESIS 3) chloroplast [GO:0009507]; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity [GO:0003949]; histidine biosynthetic process [GO:0000105]; tryptophan biosynthetic process [GO:0000162] locus:2049470; AT2G36230 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase Os05g0400800 protein,Os05g0400800 protein (Fragment) C7J278,A0A0P0WM04 C7J278_ORYSJ,A0A0P0WM04_ORYSJ Os05g0400800 Os05g0400800 OSNPB_050400800,Os05g0400800 OSNPB_050400800 ENOG411DRZU BUB3.2,BUB3.1 Q9C701,Q9LJN8 BUB32_ARATH,BUB31_ARATH Mitotic checkpoint protein BUB3.2 (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 3.2),Mitotic checkpoint protein BUB3.1 (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 3.1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18508582}.,DISRUPTION PHENOTYPE: Survives only in heterozygous state. Displays defects in development of male and female gametophytes. {ECO:0000269|PubMed:18508582}. Male and female gametophyte defective-I. Schubert-2008 FUNCTION: Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20 (By similarity). {ECO:0000250}.,FUNCTION: Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20 (By similarity). Essential for gametophyte development. {ECO:0000250, ECO:0000269|PubMed:18508582, ECO:0000269|PubMed:19710914}. R-ATH-141430;R-ATH-174184; 37670,37874 Mitotic checkpoint protein BUB3.2 (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 3.2),Mitotic checkpoint protein BUB3.1 (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 3.1) bub1-bub3 complex [GO:1990298]; condensed chromosome kinetochore [GO:0000777]; kinetochore [GO:0000776]; mitotic checkpoint complex [GO:0033597]; phragmoplast [GO:0009524]; spindle [GO:0005819]; ubiquitin binding [GO:0043130]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly checkpoint [GO:0007094],bub1-bub3 complex [GO:1990298]; condensed chromosome kinetochore [GO:0000777]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; kinetochore [GO:0000776]; kinetochore microtubule [GO:0005828]; mitotic checkpoint complex [GO:0033597]; phragmoplast [GO:0009524]; spindle microtubule [GO:0005876]; ubiquitin binding [GO:0043130]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly checkpoint [GO:0007094] TISSUE SPECIFICITY: Expressed in actively dividing tissues such as roots, flower buds, flowers and siliques. {ECO:0000269|PubMed:18508582}.,TISSUE SPECIFICITY: Expressed in actively dividing tissues, early in organ development, in young leaves, lateral root primordia and root meristems, flower buds, flowers and siliques. {ECO:0000269|PubMed:18508582, ECO:0000269|PubMed:19710914}. locus:2007248;,locus:2091211; AT1G49910,AT3G19590 Mitotic checkpoint protein Mitotic checkpoint protein BUB3, putative, expressed (Os03g0448600 protein) (Putative mitotic checkpoint protein) (cDNA clone:J033045C11, full insert sequence),Os07g0588500 protein (Putative mitotic checkpoint protein) Q75HB5,Q84Z17 Q75HB5_ORYSJ,Q84Z17_ORYSJ Os03g0448600 LOC_Os03g33580 Os03g0448600 OsJ_11417 OSJNBa0034E08.30 OSNPB_030448600,Os07g0588500 Os07g0588500 OSJNBb0005G07.117 OSNPB_070588500 ENOG411DRZV F4JI63,F4JI64 F4JI63_ARATH,F4JI64_ARATH Catalytics 91835,76846 Catalytics chloroplast [GO:0009507]; catalytic activity [GO:0003824],catalytic activity [GO:0003824] locus:2125541; AT4G03200 spermatogenesis-associated protein Os01g0935600 protein (Fragment),Os01g0935600 protein A0A0P0VCL7,A0A0P0VCI6,A0A0P0VCN4 A0A0P0VCL7_ORYSJ,A0A0P0VCI6_ORYSJ,A0A0P0VCN4_ORYSJ Os01g0935600 OSNPB_010935600 ENOG411DRZW GLK1,GPRI1 Q9SIV3,A0A1P8B320,F4IVF9 GLK1_ARATH,A0A1P8B320_ARATH,F4IVF9_ARATH Transcription activator GLK1 (GBF'S PRO-RICH REGION-INTERACTING factor 1) (Golden2-like protein 1) (AtGLK1),GBF's pro-rich region-interacting factor 1 DISRUPTION PHENOTYPE: No visible phenotype (PubMed:12220263). Pale-green seedlings in double mutants glk1/glk2 (PubMed:23459204). {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:23459204}. Plants are pale green throughout development and reduced in size. Chloroplast development impaired and photosystem II proteins accumulate to reduced levels. FUNCTION: Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. MISCELLANEOUS: Plants overexpressing GLK1 have a delay in flowering under long days, show high constitutive expression of genes encoding disease defense related proteins and are resistant to the pathogen F.graminearum. 45988,40617,47945 Transcription activator GLK1 (GBF'S PRO-RICH REGION-INTERACTING factor 1) (Golden2-like protein 1) (AtGLK1),GBF's pro-rich region-interacting factor 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; negative regulation of leaf senescence [GO:1900056]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; chloroplast organization [GO:0009658]; negative regulation of flower development [GO:0009910]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of chlorophyll biosynthetic process [GO:0010380]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}. locus:2046026; AT2G20570 transcription factor Probable transcription factor GLK1 (Golden2-like protein 1) (OsGLK1),Probable transcription factor GLK2 (Golden2-like protein 2) (OsGLK2),Os06g0348800 protein Q5Z5I4,Q5NAN5,A0A0P0WWR3 GLK1_ORYSJ,GLK2_ORYSJ,A0A0P0WWR3_ORYSJ GLK1 Os06g0348800 LOC_Os06g24070 OSJNBa0031J07.13,GLK2 Os01g0239000 LOC_Os01g13740 OSJNBa0086P08.28-1 OSJNBa0086P08.28-2,Os06g0348800 OSNPB_060348800 FUNCTION: Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.,FUNCTION: Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. ENOG411DRZH Q9LRN0 Q9LRN0_ARATH AT3g24190/MUJ8_17 (Protein kinase superfamily protein) ARA:GQT-1372-MONOMER; 87437 AT3g24190/MUJ8_17 (Protein kinase superfamily protein) chloroplast [GO:0009507]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2093711; AT3G24190 Phosphotransferase enzyme family Os02g0816600 protein (Fragment) Q0DWG0,A0A0P0VRE5 Q0DWG0_ORYSJ,A0A0P0VRE5_ORYSJ Os02g0816600 Os02g0816600 OSNPB_020816600,Os02g0816600 OSNPB_020816600 ENOG411DRZI TUFA Q9ZT91 EFTM_ARATH Elongation factor Tu, mitochondrial FUNCTION: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. {ECO:0000250|UniProtKB:P42473}. 49410 Elongation factor Tu, mitochondrial cell wall [GO:0005618]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; zinc ion binding [GO:0008270]; response to cadmium ion [GO:0046686] locus:2139325; AT4G02930 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (By similarity) Elongation factor Tu,Os03g0851100 protein (Fragment) Q851Y8,A0A0P0W5K6 Q851Y8_ORYSJ,A0A0P0W5K6_ORYSJ Os03g0851100 LOC_Os03g63410 Os03g0851100 OsJ_13388 OSJNBa0015N08.13 OSNPB_030851100,Os03g0851100 OSNPB_030851100 FUNCTION: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. {ECO:0000256|RuleBase:RU000325}. ENOG411DRZJ PFP-BETA2,PFP-BETA1 F4JGR5,Q8W4M5,Q3E7M8 PFPB2_ARATH,PFPB1_ARATH,Q3E7M8_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2 (PFP 2) (EC 2.7.1.90) (6-phosphofructokinase, pyrophosphate dependent 2) (PPi-PFK 2) (Protein MATERNAL EFFECT EMBRYO ARREST 51) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 2),Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 (PFP 1) (EC 2.7.1.90) (6-phosphofructokinase, pyrophosphate dependent 1) (PPi-PFK 1) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 1),Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-like protein DISRUPTION PHENOTYPE: Retarded growth and reduced pyrophosphate--fructose 6-phosphate 1-phosphotransferase (PFP) activity. {ECO:0000269|PubMed:19533038}. FUNCTION: Catalytic subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. {ECO:0000255|HAMAP-Rule:MF_03185}.,FUNCTION: Catalytic subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. {ECO:0000255|HAMAP-Rule:MF_03185, ECO:0000269|PubMed:19533038}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4. {ECO:0000255|HAMAP-Rule:MF_03185}. ARA:AT1G12000-MONOMER; 2.7.1.90 62742,61459,7303 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2 (PFP 2) (EC 2.7.1.90) (6-phosphofructokinase, pyrophosphate dependent 2) (PPi-PFK 2) (Protein MATERNAL EFFECT EMBRYO ARREST 51) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 2),Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 (PFP 1) (EC 2.7.1.90) (6-phosphofructokinase, pyrophosphate dependent 1) (PPi-PFK 1) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 1),Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-like protein cytosol [GO:0005829]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; diphosphate-fructose-6-phosphate 1-phosphotransferase activity [GO:0047334]; metal ion binding [GO:0046872]; embryo development ending in seed dormancy [GO:0009793]; fructose 6-phosphate metabolic process [GO:0006002]; photosynthesis [GO:0015979],cell wall [GO:0005618]; cytosol [GO:0005829]; membrane [GO:0016020]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; diphosphate-fructose-6-phosphate 1-phosphotransferase activity [GO:0047334]; metal ion binding [GO:0046872]; fructose 6-phosphate metabolic process [GO:0006002]; photosynthesis [GO:0015979]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735],kinase activity [GO:0016301] locus:2136652;,locus:2008920;,locus:504955255; AT4G04040,AT1G12000,AT4G08876 pyrophosphate--fructose 6-phosphate 1-phosphotransferase Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (PFP) (EC 2.7.1.90) (6-phosphofructokinase, pyrophosphate dependent) (PPi-PFK) (Pyrophosphate-dependent 6-phosphofructose-1-kinase),Os06g0247500 protein (Fragment) Q654U8,A0A0P0WUZ1 Q654U8_ORYSJ,A0A0P0WUZ1_ORYSJ PFP-BETA Os06g0247500 OJ1136_C11.21 OsJ_20808 OSNPB_060247500,Os06g0247500 OSNPB_060247500 FUNCTION: Catalytic subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. {ECO:0000256|HAMAP-Rule:MF_03185}. ENOG411DRZK MXI10.5 Q8RWM9,F4KA71 Q8RWM9_ARATH,F4KA71_ARATH Uncharacterized protein At5g38380 (Zinc transporter),Zinc transporter 40054,30093 Uncharacterized protein At5g38380 (Zinc transporter),Zinc transporter integral component of membrane [GO:0016021]; membrane [GO:0016020]; zinc ion transmembrane transporter activity [GO:0005385]; regulation of sequestering of zinc ion [GO:0061088]; response to zinc ion [GO:0010043],integral component of membrane [GO:0016021] locus:2177381; AT5G38380 NA Os07g0283200 protein (cDNA clone:002-113-H04, full insert sequence),Os07g0283200 protein (Fragment) B7EZJ3,A0A0P0X4E8 B7EZJ3_ORYSJ,A0A0P0X4E8_ORYSJ Os07g0283200 OSNPB_070283200 ENOG411DRZM ALA4,ALA6,ALA5,ALA7 Q9LNQ4,Q9SLK6,Q9SGG3,Q9LVK9,A0A1I9LT86,A0A1I9LT85 ALA4_ARATH,ALA6_ARATH,ALA5_ARATH,ALA7_ARATH,A0A1I9LT86_ARATH,A0A1I9LT85_ARATH Probable phospholipid-transporting ATPase 4 (AtALA4) (EC 3.6.3.1) (Aminophospholipid flippase 4),Phospholipid-transporting ATPase 6 (AtALA6) (EC 3.6.3.1) (Aminophospholipid flippase 6),Probable phospholipid-transporting ATPase 5 (AtALA5) (EC 3.6.3.1) (Aminophospholipid flippase 5),Probable phospholipid-transporting ATPase 7 (AtALA7) (EC 3.6.3.1) (Aminophospholipid flippase 7),Phospholipid-transporting ATPase (EC 3.6.3.1) DISRUPTION PHENOTYPE: Ala6 and ala7 double mutants are hypersensitive to temperature stress and are impaired in pollen fitness with an altered lipid composition and short and slow pollen tubes. {ECO:0000269|PubMed:25954280}. FUNCTION: Involved in transport of phospholipids. {ECO:0000305|PubMed:11402198}.,FUNCTION: Involved in transport of phospholipids and in regulation of pollen plasma membrane lipid asymmetry. {ECO:0000305|PubMed:25954280}. ARA:AT1G17500-MONOMER;,ARA:AT1G54280-MONOMER;,ARA:AT1G72700-MONOMER;,ARA:AT3G13900-MONOMER; R-ATH-6798695;R-ATH-936837; 3.6.3.1 138189,140102,139342,140301,109141,113907 Probable phospholipid-transporting ATPase 4 (AtALA4) (EC 3.6.3.1) (Aminophospholipid flippase 4),Phospholipid-transporting ATPase 6 (AtALA6) (EC 3.6.3.1) (Aminophospholipid flippase 6),Probable phospholipid-transporting ATPase 5 (AtALA5) (EC 3.6.3.1) (Aminophospholipid flippase 5),Probable phospholipid-transporting ATPase 7 (AtALA7) (EC 3.6.3.1) (Aminophospholipid flippase 7),Phospholipid-transporting ATPase (EC 3.6.3.1) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012]; Golgi vesicle budding [GO:0048194],endomembrane system [GO:0012505]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012]; zinc ion binding [GO:0008270]; Golgi vesicle budding [GO:0048194]; pollen tube growth [GO:0009860]; regulation of membrane lipid metabolic process [GO:1905038],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012]; Golgi vesicle budding [GO:0048194]; pollen tube growth [GO:0009860]; regulation of membrane lipid metabolic process [GO:1905038],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012] locus:2007858;,locus:2020038;,locus:2030180;,locus:2088217; AT1G17500,AT1G54280,AT1G72700,AT3G13900 phospholipid-transporting ATPase Phospholipid-transporting ATPase (EC 3.6.3.1) (Fragment) Q0DBG8 Q0DBG8_ORYSJ Os06g0565900 Os06g0565900 OSNPB_060565900 ENOG411DRZN BOR5,BOR4,BOR7 Q9SSG5,Q9XI23,Q9SUU1,A0A1P8ATS7,A0A1P8AU17,A0A1P8AU05,A0A1P8B3Q0,A0A1P8ATR0,A0A1P8ATS9 BOR5_ARATH,BOR4_ARATH,BOR7_ARATH,A0A1P8ATS7_ARATH,A0A1P8AU17_ARATH,A0A1P8AU05_ARATH,A0A1P8B3Q0_ARATH,A0A1P8ATR0_ARATH,A0A1P8ATS9_ARATH Putative boron transporter 5,Boron transporter 4,Probable boron transporter 7,HCO3-transporter family FUNCTION: Putative boron transporter. Boron is essential for maintaining the integrity of plants cell walls (By similarity). {ECO:0000250}.,FUNCTION: Efflux-type boron transporter polarly localized in roots. Boron is essential for maintaining the integrity of plants cell walls. {ECO:0000269|PubMed:18048682}. R-ATH-1237044;R-ATH-1247673;R-ATH-425381; 76736,76700,76282,73347,73967,65393,76411,65336,60884 Putative boron transporter 5,Boron transporter 4,Probable boron transporter 7,HCO3-transporter family integral component of plasma membrane [GO:0005887]; anion transmembrane transporter activity [GO:0008509]; anion:anion antiporter activity [GO:0015301]; inorganic anion exchanger activity [GO:0005452]; anion transmembrane transport [GO:0098656]; regulation of intracellular pH [GO:0051453],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; anion:anion antiporter activity [GO:0015301]; borate efflux transmembrane transporter activity [GO:0080139]; inorganic anion exchanger activity [GO:0005452]; borate transport [GO:0046713]; cellular response to boron-containing substance levels [GO:0080029]; regulation of intracellular pH [GO:0051453],integral component of membrane [GO:0016021]; inorganic anion exchanger activity [GO:0005452] TISSUE SPECIFICITY: Expressed in the distal sides of epidermal cells in the elongation zone of roots. {ECO:0000269|PubMed:18048682}. locus:2037240;,locus:2037808;,locus:2127791; AT1G74810,AT1G15460,AT4G32510 boron transporter Os01g0175600 protein (cDNA clone:J023086K01, full insert sequence),Boron transporter (Os01g0175700 protein) Q0JQ90,Q1ZYR7 Q0JQ90_ORYSJ,Q1ZYR7_ORYSJ Os01g0175600 Os01g0175600 OSNPB_010175600,BOR2 Os01g0175700 OSNPB_010175700 ENOG411DRZA 5-METHYLTHIORIBOSE KINASE 1 Q9ZUG4,A8MRP9 MTNA_ARATH,A8MRP9_ARATH Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (EC 5.3.1.23) (S-methyl-5-thioribose-1-phosphate isomerase) (Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein),NagB/RpiA/CoA transferase-like superfamily protein FUNCTION: Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). {ECO:0000255|HAMAP-Rule:MF_03119}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 1/6. {ECO:0000255|HAMAP-Rule:MF_03119}. ARA:AT2G05830-MONOMER; R-ATH-1237112; 5.3.1.23 39612,34535 Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (EC 5.3.1.23) (S-methyl-5-thioribose-1-phosphate isomerase) (Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein),NagB/RpiA/CoA transferase-like superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; S-methyl-5-thioribose-1-phosphate isomerase activity [GO:0046523]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; L-methionine salvage from methylthioadenosine [GO:0019509],transferase activity [GO:0016740]; cellular biosynthetic process [GO:0044249] locus:2064717; AT2G05830 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P) (By similarity) Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (EC 5.3.1.23) (Protein IRON DEFICIENCY INDUCIBLE 2) (OsIDI2) (S-methyl-5-thioribose-1-phosphate isomerase) (Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein) Q0ITU1 MTNA_ORYSJ IDI2 Os11g0216900 LOC_Os11g11050 OsJ_33377 FUNCTION: Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). {ECO:0000255|HAMAP-Rule:MF_03119}. ENOG411DRZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0694400 protein (cDNA clone:J013028E09, full insert sequence) (cDNA clone:J013046J02, full insert sequence) Q5Z8I6 Q5Z8I6_ORYSJ Os06g0694400 Os06g0694400 OsJ_22477 OSNPB_060694400 P0550B04.28 P0622F03.3 ENOG411DRZC F8M21_280 Q9LXE4,A0A1P8BD45 Q9LXE4_ARATH,A0A1P8BD45_ARATH rRNA methylase-like protein (tRNA/rRNA methyltransferase (SpoU) family protein),tRNA/rRNA methyltransferase (SpoU) family protein 38854,29006 rRNA methylase-like protein (tRNA/rRNA methyltransferase (SpoU) family protein),tRNA/rRNA methyltransferase (SpoU) family protein RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; tRNA methylation [GO:0030488],RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; RNA processing [GO:0006396] locus:2151001; AT5G15390 SpoU rRNA Methylase family Os07g0598100 protein (Putative rRNA methylase) (cDNA clone:J013134J21, full insert sequence) Q6ZJE6 Q6ZJE6_ORYSJ Os07g0598100 OJ1579_C03.18 OSNPB_070598100 ENOG411DRZD A0A1P8B1I1,Q9SRN6,A0A1P8B1F6,A0A1P8B1G3,A0A1P8B1H5,F4IR54 A0A1P8B1I1_ARATH,Q9SRN6_ARATH,A0A1P8B1F6_ARATH,A0A1P8B1G3_ARATH,A0A1P8B1H5_ARATH,F4IR54_ARATH RNA-binding ASCH domain protein,At3g03320 (Expressed protein) (RNA-binding ASCH domain protein) (T21P5.26 protein) 27451,27118,32499,34396,35676,43755 RNA-binding ASCH domain protein,At3g03320 (Expressed protein) (RNA-binding ASCH domain protein) (T21P5.26 protein) integral component of membrane [GO:0016021] locus:2099699;,locus:5019474741; AT3G03320,AT2G43465 Inherit from COG: ProFAR isomerase Os11g0265500 protein A0A0N7KSR2 A0A0N7KSR2_ORYSJ Os11g0265500 OSNPB_110265500 ENOG411DRZF F5D14.10 Q9LQM5 Q9LQM5_ARATH F5D14.10 protein (NDR1/HIN1-like 8) (RING finger protein, putative) (Uncharacterized protein F27G20.5) 78597 F5D14.10 protein (NDR1/HIN1-like 8) (RING finger protein, putative) (Uncharacterized protein F27G20.5) cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2028316; AT1G32340 E3 ubiquitin-protein ligase RBR-type E3 ubiquitin transferase (EC 2.3.2.31) (Fragment),Os04g0593800 protein,Os04g0594000 protein,Os04g0593700 protein Q0JAK1,A0A0P0WE54,A0A0P0WE49,A0A0P0WE82 Q0JAK1_ORYSJ,A0A0P0WE54_ORYSJ,A0A0P0WE49_ORYSJ,A0A0P0WE82_ORYSJ Os04g0593600 Os04g0593600 OSNPB_040593600,Os04g0593800 OSNPB_040593800,Os04g0594000 OSNPB_040594000,Os04g0593700 OSNPB_040593700 ENOG411DRZG DGR2 Q9LYE7,Q9SUU6,Q94F20,Q8LAR0 Q9LYE7_ARATH,Q9SUU6_ARATH,Q94F20_ARATH,Q8LAR0_ARATH Uncharacterized protein At5g11420 (Uncharacterized protein F15N18_10),Uncharacterized protein AT4g32460 (Uncharacterized protein F8B4.160),At5g25460,At4g32460 39641,35293,39978,39819 Uncharacterized protein At5g11420 (Uncharacterized protein F15N18_10),Uncharacterized protein AT4g32460 (Uncharacterized protein F8B4.160),At5g25460,At4g32460 cell wall [GO:0005618]; plant-type cell wall [GO:0009505],plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; response to karrikin [GO:0080167]; root morphogenesis [GO:0010015],plant-type cell wall [GO:0009505] locus:2144206;,locus:2145457;,locus:2127831; AT5G11420,AT5G25460,AT4G32460 expressed protein Os01g0611000 protein (cDNA clone:001-029-E10, full insert sequence) (cDNA clone:J023127H12, full insert sequence),Os02g0205200 protein (Fragment),Os02g0527500 protein,Os01g0611000 protein (Fragment) Q9AX68,Q0E2X7,A0A0P0VJV0,A0A0P0V549 Q9AX68_ORYSJ,Q0E2X7_ORYSJ,A0A0P0VJV0_ORYSJ,A0A0P0V549_ORYSJ P0410E03.33-1 Os01g0611000 P0046B10.2-1 OsJ_02574 OSNPB_010611000,Os02g0205200 Os02g0205200 OSNPB_020205200,Os02g0527500 OSNPB_020527500,Os01g0611000 OSNPB_010611000 ENOG411EF89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0120000 protein C7IZY3 C7IZY3_ORYSJ Os03g0120000 OSNPB_030120000 ENOG411EF88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EF81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411EF80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EF83 Q84X19,Q2V3Y1,Q9LUV0,Q9LUU8,A0A1I9LPY7 Q84X19_ARATH,Q2V3Y1_ARATH,Q9LUV0_ARATH,Q9LUU8_ARATH,A0A1I9LPY7_ARATH At2g15345 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At2g15345/F26H6.17),Plant invertase/pectin methylesterase inhibitor superfamily protein 14022,21303,20299,21387,20674 At2g15345 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At2g15345/F26H6.17),Plant invertase/pectin methylesterase inhibitor superfamily protein pectinesterase inhibitor activity [GO:0046910],enzyme inhibitor activity [GO:0004857]; pectinesterase inhibitor activity [GO:0046910] locus:504956040;,locus:1009023298;,locus:504955758;,locus:2089020; AT2G15345,AT3G05741,AT3G17225,AT3G17230 Invertase pectin methylesterase NA NA NA NA NA NA NA ENOG411EF82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os07g0245801 protein B9FWE2 B9FWE2_ORYSJ Os07g0245801 OsJ_23695 OSNPB_070245801 ENOG411EF85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os06g0621500 protein (Fragment),Os05g0331700 protein A0A0P0WZ39,A0A0P0WKT7 A0A0P0WZ39_ORYSJ,A0A0P0WKT7_ORYSJ Os06g0621500 OSNPB_060621500,Os05g0331700 OSNPB_050331700 ENOG411EF84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0382500 protein (Fragment) A0A0P0V2T6 A0A0P0V2T6_ORYSJ Os01g0382500 OSNPB_010382500 ENOG411EF87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-dependent decarboxylase C-terminal sheet domain NA NA NA NA NA NA NA ENOG411EF86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: outer dense fiber of sperm tails NA NA NA NA NA NA NA ENOG411EF8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional regulatory protein C terminal NA NA NA NA NA NA NA ENOG411EF8Q ERF096,ERF14 Q9LSX0,P93822 ERF96_ARATH,ERF97_ARATH Ethylene-responsive transcription factor ERF096,Ethylene-responsive transcription factor 14 (AtERF14) (Ethylene-responsive element-binding factor 14) (EREBP-14) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.,FUNCTION: Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. 14343,14743 Ethylene-responsive transcription factor ERF096,Ethylene-responsive transcription factor 14 (AtERF14) (Ethylene-responsive element-binding factor 14) (EREBP-14) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of cellular defense response [GO:0010186]; positive regulation of transcription, DNA-templated [GO:0045893]; stomatal closure [GO:0090332]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}. locus:2176511;,locus:2018289; AT5G43410,AT1G04370 AP2 NA NA NA NA NA NA NA ENOG411EF8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EF8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EF8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Armadillo/beta-catenin-like repeat NA NA NA NA NA NA NA ENOG411EF8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0722700 protein) (cDNA clone:006-202-F11, full insert sequence) Q53K25 Q53K25_ORYSJ Os03g0722700 LOC_Os03g51260 OsJ_12396 OSNPB_030722700 ENOG411EF8T F4KDS4,A0A1P8BDZ7 F4KDS4_ARATH,A0A1P8BDZ7_ARATH Valine-tRNA ligase 15800,25755 Valine-tRNA ligase integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2151196; AT5G02720 NA NA NA NA NA NA NA NA ENOG411EF8W F24B22.120 P0C2G1,Q9LXR0,Q9LYU0,Q9LZP7,Q9LF20,Q9LZP6,Q9M388 FBL26_ARATH,FBL58_ARATH,FB210_ARATH,FB216_ARATH,FBL81_ARATH,FBL70_ARATH,Q9M388_ARATH F-box/LRR-repeat protein At3g58980,Putative F-box/LRR-repeat protein At3g58920,Putative F-box protein At3g58960,F-box protein At3g62430,Putative F-box/LRR-repeat protein At5g15620,F-box/LRR-repeat protein At3g62440,RNI-like superfamily protein (Uncharacterized protein F24B22.120) 67982,53918,54097,49899,50697,52741,49881 F-box/LRR-repeat protein At3g58980,Putative F-box/LRR-repeat protein At3g58920,Putative F-box protein At3g58960,F-box protein At3g62430,Putative F-box/LRR-repeat protein At5g15620,F-box/LRR-repeat protein At3g62440,RNI-like superfamily protein (Uncharacterized protein F24B22.120) anther dehiscence [GO:0009901] locus:2077675;,locus:2099109;,locus:2077660;,locus:2096039;,locus:2180932;,locus:2096054;,locus:2080260; AT3G58980,AT3G58920,AT3G58960,AT3G62430,AT5G15620,AT3G62440,AT3G54160 F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411EF8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Saccharopine dehydrogenase NA NA NA NA NA NA NA ENOG411EF8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0682000 protein (cDNA clone:002-168-D09, full insert sequence) Q7XHV8 Q7XHV8_ORYSJ Os07g0682000 Os07g0682000 OsJ_25609 OSJNBa0008J01.29 OSNPB_070682000 ENOG411EF8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Abhydrolase domain containing NA NA NA NA NA NA NA ENOG411EF8K Q9SYZ5,O81761 Q9SYZ5_ARATH,O81761_ARATH Cupredoxin superfamily protein (Uncharacterized protein AT4g34300),Cupredoxin superfamily protein (Uncharacterized protein AT4g33930) (Uncharacterized protein F17I5.120) 33063,36104 Cupredoxin superfamily protein (Uncharacterized protein AT4g34300),Cupredoxin superfamily protein (Uncharacterized protein AT4g33930) (Uncharacterized protein F17I5.120) electron carrier activity [GO:0009055] locus:2116199;,locus:2118909; AT4G34300,AT4G33930 glycine-rich protein NA NA NA NA NA NA NA ENOG411EF8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) OSJNBa0020J04.6 protein (Os04g0576700 protein),Os10g0550200 protein (Fragment),Os05g0544900 protein (Fragment) Q7XUH6,Q0IVW2,A0A0P0WQK3 Q7XUH6_ORYSJ,Q0IVW2_ORYSJ,A0A0P0WQK3_ORYSJ Os04g0576700 Os04g0576700 OsJ_15864 OSJNBa0020J04.6 OSNPB_040576700,Os10g0550200 OSNPB_100550200,Os05g0544900 OSNPB_050544900 ENOG411EF8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EF-1 guanine nucleotide exchange domain NA NA NA NA NA NA NA ENOG411EF8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PsbP NA NA NA NA NA NA NA ENOG411EF8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA domain NA NA NA NA NA NA NA ENOG411EF8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411EF8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Microtubule-binding calmodulin-regulated spectrin-associated NA NA NA NA NA NA NA ENOG411EF8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein NA NA NA NA NA NA NA ENOG411EF8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8ND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain NA NA NA NA NA NA NA ENOG411E8NB P47925 CWPX_ARATH Putative cell wall protein 14260 Putative cell wall protein cell wall [GO:0005618]; extracellular region [GO:0005576] TISSUE SPECIFICITY: Inflorescence. locus:2051369; AT2G20870 cell wall NA NA NA NA NA NA NA ENOG411E8NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411E8NN PSK6 Q8LA14 PSK6_ARATH Putative phytosulfokines 6 (AtPSK3_2) (AtPSK6) [Cleaved into: Phytosulfokine-alpha-like (PSK-alpha-like) (Phytosulfokine-a-like); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. {ECO:0000250}. 9292 Putative phytosulfokines 6 (AtPSK3_2) (AtPSK6) [Cleaved into: Phytosulfokine-alpha-like (PSK-alpha-like) (Phytosulfokine-a-like); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] extracellular region [GO:0005576]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; cell proliferation [GO:0008283]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Most abundant in vascular bundles and in root tips. {ECO:0000269|PubMed:16829587}. locus:505006386; AT3G44735 phytosulfokine peptide NA NA NA NA NA NA NA ENOG411E8NJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0829500 protein A0A0P0V9Y8 A0A0P0V9Y8_ORYSJ Os01g0829500 OSNPB_010829500 ENOG411E8NT O81005 O81005_ARATH At2g22880 (Uncharacterized protein At2g22880) (VQ motif-containing protein) 12973 At2g22880 (Uncharacterized protein At2g22880) (VQ motif-containing protein) protein domain specific binding [GO:0019904]; response to UV-B [GO:0010224] locus:2059160; AT2G22880 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411E8NV Q9LK59 Q9LK59_ARATH Hydroxyproline-rich glycoprotein family protein 20359 Hydroxyproline-rich glycoprotein family protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2090004; AT3G13140 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411E8NQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfatase-modifying factor enzyme 1 NA NA NA NA NA NA NA ENOG411E8NP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0799300 protein (cDNA clone:002-136-A05, full insert sequence) Q851Q2 Q851Q2_ORYSJ OSJNBa0052F07.21 LOC_Os03g58500 Os03g0799300 OsJ_12971 OSNPB_030799300 ENOG411E8NY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0271500 protein A0A0N7KLX0 A0A0N7KLX0_ORYSJ Os06g0271500 OSNPB_060271500 ENOG411E8N4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E8N7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E8N6 Q6NLG8,O81872 Q6NLG8_ARATH,O81872_ARATH At4g33550 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein AT4g33550) (Uncharacterized protein T16L1.40) 14283,12294 At4g33550 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein AT4g33550) (Uncharacterized protein T16L1.40) locus:2134173; AT4G33550 NA NA NA NA NA NA NA NA ENOG411E8N0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0395400 protein Q0DIE6 Q0DIE6_ORYSJ Os05g0395400 Os05g0395400 OSNPB_050395400 ENOG411E8N3 Q9SGN8 Q9SGN8_ARATH F3M18.16 (GATA zinc finger protein) (Uncharacterized protein At1g28400) 39655 F3M18.16 (GATA zinc finger protein) (Uncharacterized protein At1g28400) locus:2032515; AT1G28400 NA NA NA NA NA NA NA NA ENOG411E8N2 psaI P56768 PSAI_ARATH Photosystem I reaction center subunit VIII (PSI-I) FUNCTION: May help in the organization of the PsaL subunit. {ECO:0000250}. 4134 Photosystem I reaction center subunit VIII (PSI-I) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosynthesis [GO:0015979] locus:504954674; ATCG00510 May help in the organization of the PsaL subunit (By similarity) Photosystem I reaction center subunit VIII (PSI-I) P12186 PSAI_ORYSJ psaI LOC_Osp1g00450 FUNCTION: May help in the organization of the PsaL subunit. {ECO:0000250}. ENOG411E8N9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8N8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8J2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E14C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0603300 protein (Putative MCB2 protein),Os01g0603300 protein (Putative MCB2 protein) (cDNA clone:J033128P13, full insert sequence) Q5ZBC6,Q8W0M6 Q5ZBC6_ORYSJ,Q8W0M6_ORYSJ B1085F01.29-2 Os01g0603300 P0681B11.9-2 OSNPB_010603300,P0681B11.9-1 B1085F01.29-1 Os01g0603300 OsJ_02512 OSNPB_010603300 ENOG411E14A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SynN NA NA NA NA NA NA NA ENOG411E14F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os02g0727700 protein (Zinc finger-like) (cDNA, clone: J065162E09, full insert sequence) Q6Z330 Q6Z330_ORYSJ Os02g0727700 B1121A12.32 OSNPB_020727700 ENOG411E14G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN Os06g0716200 protein (Fragment) C7J3I9 C7J3I9_ORYSJ Os06g0716200 Os06g0716200 OSNPB_060716200 ENOG411E14D Q5XVK9 Q5XVK9_ARATH Restriction endonuclease, type II-like superfamily protein 35494 Restriction endonuclease, type II-like superfamily protein DNA binding [GO:0003677]; endonuclease activity [GO:0004519] locus:2014874; AT1G13810 YqaJ-like viral recombinase domain NA NA NA NA NA NA NA ENOG411E14E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like Flavin-containing monooxygenase (EC 1.-.-.-) Q7XHL8 Q7XHL8_ORYSJ Os07g0437000 Os07g0437000 OSJNBb0095H08.19 OSNPB_070437000 ENOG411E14N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os08g0421800 protein (cDNA clone:J033118I12, full insert sequence),Os09g0383300 protein Q8H334,A0A0P0XM57 Q8H334_ORYSJ,A0A0P0XM57_ORYSJ Os08g0421800 Os08g0421800 OSJNBa0077M12.113 OSNPB_080421800,Os09g0383300 OSNPB_090383300 ENOG411E14W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0318600 protein,Myb family protein-like (Os09g0317700 protein) (cDNA clone:J033025H14, full insert sequence) Q69LY2,Q69M84 Q69LY2_ORYSJ,Q69M84_ORYSJ Os09g0318600 Os09g0318600 OsJ_36243 OSJNBa0045M11.13 OSNPB_090318600,Os09g0317700 Os09g0317700 OsJ_28839 OSJNBa0023G13.27 OSNPB_090317700 ENOG411EE6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411DZZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain NA NA NA NA NA NA NA ENOG411DZZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein Os10g0134700 protein,Os10g0136150 protein,Os10g0134500 protein A0A0P0XS84,A0A0P0XRE4,A0A0P0XSH7 A0A0P0XS84_ORYSJ,A0A0P0XRE4_ORYSJ,A0A0P0XSH7_ORYSJ Os10g0134700 OSNPB_100134700,Os10g0136150 OSNPB_100136150,Os10g0134500 OSNPB_100134500 ENOG411DZZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response to cytokinin stimulus Homeobox-leucine zipper protein HOX15 (HD-ZIP protein HOX15) (Homeodomain transcription factor HOX15) (OsHox15),Os10g0103700 protein (Fragment),Os10g0103700 protein Q7G737,Q0IZD6,A0A0P0XQV2,A0A0P0XQY2 HOX15_ORYSJ,Q0IZD6_ORYSJ,A0A0P0XQV2_ORYSJ,A0A0P0XQY2_ORYSJ HOX15 Os10g0103700 LOC_Os10g01470 OsJ_029257 OSJNBa0071K19.5 OSJNBa0096E22.15,Os10g0103700 OSNPB_100103700 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DZZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411DZZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein HIN1-like protein (Os09g0267400 protein) Q6H4U3 Q6H4U3_ORYSJ Os09g0267400 Os09g0267400 B1008E06.11 OSNPB_090267400 ENOG411DZZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain Expressed protein (Os03g0565900 protein) (cDNA clone:J023106C19, full insert sequence),Expressed protein (Os03g0565300 protein),Os12g0256800 protein Q10I34,Q94I52,A0A0P0Y8P6 Q10I34_ORYSJ,Q94I52_ORYSJ,A0A0P0Y8P6_ORYSJ Os03g0565900 LOC_Os03g36830 Os03g0565900 OSNPB_030565900,Os03g0565300 LOC_Os03g36760 Os03g0565300 OSJNBa0084C09.20 OSNPB_030565300,Os12g0256800 OSNPB_120256800 ENOG411EAM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EAM8 CRK16,CRK30 O65476,Q9LDT0,A0A1P8B395,A0A1P8B396,A0A1P8B4Z8 CRK16_ARATH,CRK30_ARATH,A0A1P8B395_ARATH,A0A1P8B396_ARATH,A0A1P8B4Z8_ARATH Putative cysteine-rich receptor-like protein kinase 16 (Cysteine-rich RLK16) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 30 (Cysteine-rich RLK30) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 30,Cysteine-rich RLK (RECEPTOR-like protein kinase) 16 2.7.11.- 74586,77800,77555,69273,39925 Putative cysteine-rich receptor-like protein kinase 16 (Cysteine-rich RLK16) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 30 (Cysteine-rich RLK30) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 30,Cysteine-rich RLK (RECEPTOR-like protein kinase) 16 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2123116; AT4G23240,AT4G11460 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EAM1 MED37B Q8H1B3 MD37B_ARATH Probable mediator of RNA polymerase II transcription subunit 37b (BiP chaperone BIP-L) (Heat shock 70 kDa protein 13) (Heat shock protein 70-13) (AtHsp70-13) (Hsp70 protein BiP chaperone BIP-L) (Luminal-binding protein 3) (AtBP3) (BiP3) FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}.; FUNCTION: Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER. {ECO:0000250}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. 75149 Probable mediator of RNA polymerase II transcription subunit 37b (BiP chaperone BIP-L) (Heat shock 70 kDa protein 13) (Heat shock protein 70-13) (AtHsp70-13) (Hsp70 protein BiP chaperone BIP-L) (Luminal-binding protein 3) (AtBP3) (BiP3) endoplasmic reticulum lumen [GO:0005788]; mediator complex [GO:0016592]; ATP binding [GO:0005524]; pollen tube growth [GO:0009860]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2035994; AT1G09080 MreB/Mbl protein NA NA NA NA NA NA NA ENOG411EAM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EAM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transport factor 2 (NTF2) domain NA NA NA NA NA NA NA ENOG411EAM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GMC oxidoreductase NA NA NA NA NA NA NA ENOG411EAM5 4CL4,4CL5 Q9LU36,A0A1I9LQ96,A0A1I9LQ95,A0A1I9LQ97 4CL4_ARATH,A0A1I9LQ96_ARATH,A0A1I9LQ95_ARATH,A0A1I9LQ97_ARATH 4-coumarate--CoA ligase 4 (4CL 4) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 5) (At4CL5) (4-coumaroyl-CoA synthase 4),4-coumarate:CoA ligase 5 FUNCTION: Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics. {ECO:0000269|PubMed:14769935}. MISCELLANEOUS: Activates efficiently sinapate, besides the usual 4CL substrates (4-coumarate, caffeate, and ferulate). PATHWAY: Phytoalexin biosynthesis; 3,4',5-trihydroxystilbene biosynthesis; 3,4',5-trihydroxystilbene from trans-4-coumarate: step 1/2. 6.2.1.12 62559,54234,48876,60521 4-coumarate--CoA ligase 4 (4CL 4) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 5) (At4CL5) (4-coumaroyl-CoA synthase 4),4-coumarate:CoA ligase 5 4-coumarate-CoA ligase activity [GO:0016207]; ATP binding [GO:0005524]; phenylpropanoid biosynthetic process [GO:0009699],ligase activity [GO:0016874]; metabolic process [GO:0008152] locus:2094771; AT3G21230 AMP-binding enzyme NA NA NA NA NA NA NA ENOG411EAM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os01g0143400 protein,Os09g0443200 protein,Os02g0297200 protein,Os02g0299850 protein,Os12g0187200 protein,Os01g0143650 protein,Os01g0143501 protein Q9FU79,Q67UT3,Q6K8M2,A0A0P0VI05,A0A0P0Y7R2,A0A0P0UXW5,A0A0P0UY21 Q9FU79_ORYSJ,Q67UT3_ORYSJ,Q6K8M2_ORYSJ,A0A0P0VI05_ORYSJ,A0A0P0Y7R2_ORYSJ,A0A0P0UXW5_ORYSJ,A0A0P0UY21_ORYSJ Os01g0143400 Os01g0143400 OsJ_00332 OSNPB_010143400 P0019D06.32 P0024G09.20,P0046G12.33 Os09g0443200 OSNPB_090443200,Os02g0297200 Os02g0297200 OJ1654_A02.12 OsJ_06352 OSNPB_020297200,Os02g0299850 OSNPB_020299850,Os12g0187200 OSNPB_120187200,Os01g0143650 OSNPB_010143650,Os01g0143501 OSNPB_010143501 ENOG411EAM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os05g0427600 protein A0A0P0WMP0 A0A0P0WMP0_ORYSJ Os05g0427600 OSNPB_050427600 ENOG411EAM6 ATL30 Q9FIR0 ATL30_ARATH RING-H2 finger protein ATL30 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL30) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 33432 RING-H2 finger protein ATL30 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL30) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2178515; AT5G46650 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EAMI MUF9.16 Q9FKJ4 Q9FKJ4_ARATH At5g60530/muf9_180 (Late embryogenesis abundant protein-related / LEA protein-like protein) (Similarity to root cap protein) 50085 At5g60530/muf9_180 (Late embryogenesis abundant protein-related / LEA protein-like protein) (Similarity to root cap protein) locus:2175198; AT5G60530 late embryogenesis abundant NA NA NA NA NA NA NA ENOG411EAMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CS domain NA NA NA NA NA NA NA ENOG411EAMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EAMN BARS1,PEN7,PEN1,MRN1,PEN6,PEN3,THAS1 O23390,Q9LS68,Q9FR95,Q9FJV8,Q9SYN1,Q9LVY2,Q9FI37,A0A1P8B580,A0A1P8B819 BARS1_ARATH,PEN7_ARATH,PEN1_ARATH,PEN5_ARATH,PEN6_ARATH,PEN3_ARATH,PEN4_ARATH,A0A1P8B580_ARATH,A0A1P8B819_ARATH Baruol synthase (AtBARS1) (EC 5.4.99.57) (Pentacyclic triterpene synthase 2) (AtPEN2),Putative pentacyclic triterpene synthase 7 (AtPEN7) (EC 5.4.99.-),Arabidiol synthase (EC 4.2.1.124) (Pentacyclic triterpene synthase 1) (AtPEN1),Marneral synthase (AtMRN1) (EC 5.4.99.53) (Pentacyclic triterpene synthase 5) (AtPEN5),Seco-amyrin synthase (EC 5.4.99.52) (EC 5.4.99.54) (Alpha-seco-amyrin synthase) (Beta-seco-amyrin synthase) (Pentacyclic triterpene synthase 6) (AtPEN6),Tirucalladienol synthase (EC 5.4.99.56) (Pentacyclic triterpene synthase 3) (AtPEN3),Thalianol synthase (AtTHAS1) (EC 5.4.99.31) (Pentacyclic triterpene synthase 4) (AtPEN4),Pentacyclic triterpene synthase 1,Terpene cyclase/mutase family member (EC 5.4.99.-) DISRUPTION PHENOTYPE: Loss of thalianol production in roots. {ECO:0000269|PubMed:18356490}. thas1-1 mutants do not produce detectable levels of thalianol in root extracts but low levels of this compound can be detected in wild type root extracts. However these mutants do not seem to have higher susceptibility to Atlernaria brassicicola or Pseudomonas syringae pv. tomato DC3000 based on assays performed on seedling roots. Complete loss of thalianol accumulation in roots-A. Osbourn-2008 FUNCTION: Converts oxidosqualene to baruol (90%) and 22 minor products. {ECO:0000269|PubMed:17705488}.,FUNCTION: Converts oxidosqualene to arabidiol. Minor production of arabidiol 20,21-epoxide. {ECO:0000269|PubMed:16774269, ECO:0000269|PubMed:17474751}.,FUNCTION: Converts oxidosqualene to marneral. {ECO:0000269|PubMed:16425307}.,FUNCTION: Multifunctional enzyme that converts oxidosqualene to lupeol, bauerenol, alpha-amyrin, taraxasterol, psi-taraxasterol, multiflorenol, alpha-seco-amyrin and beta-seco-amyrin. {ECO:0000269|PubMed:17263431, ECO:0000269|Ref.5}.,FUNCTION: Converts oxidosqualene to tirucalladienol. {ECO:0000269|PubMed:19445469}.,FUNCTION: Converts oxidosqualene to thalianol. {ECO:0000269|PubMed:15125655, ECO:0000269|PubMed:18356490}. MISCELLANEOUS: Constitutes with three contiguous genes an operon-like gene cluster that is involved in the thalianol pathway. MetaCyc:AT4G15370-MONOMER;,ARA:AT3G29255-MONOMER;,ARA:AT4G15340-MONOMER;MetaCyc:AT4G15340-MONOMER;,MetaCyc:AT5G42600-MONOMER;,ARA:AT1G78500-MONOMER;,ARA:AT5G36150-MONOMER;MetaCyc:AT5G36150-MONOMER; 5.4.99.57,5.4.99.-,4.2.1.124,5.4.99.53,5.4.99.52; 5.4.99.54,5.4.99.56,5.4.99.31 87455,88288,88074,87207,88447,87804,88203,67298,87171 Baruol synthase (AtBARS1) (EC 5.4.99.57) (Pentacyclic triterpene synthase 2) (AtPEN2),Putative pentacyclic triterpene synthase 7 (AtPEN7) (EC 5.4.99.-),Arabidiol synthase (EC 4.2.1.124) (Pentacyclic triterpene synthase 1) (AtPEN1),Marneral synthase (AtMRN1) (EC 5.4.99.53) (Pentacyclic triterpene synthase 5) (AtPEN5),Seco-amyrin synthase (EC 5.4.99.52) (EC 5.4.99.54) (Alpha-seco-amyrin synthase) (Beta-seco-amyrin synthase) (Pentacyclic triterpene synthase 6) (AtPEN6),Tirucalladienol synthase (EC 5.4.99.56) (Pentacyclic triterpene synthase 3) (AtPEN3),Thalianol synthase (AtTHAS1) (EC 5.4.99.31) (Pentacyclic triterpene synthase 4) (AtPEN4),Pentacyclic triterpene synthase 1,Terpene cyclase/mutase family member (EC 5.4.99.-) baruol synthase activity [GO:0080011]; tetracyclic triterpenoid biosynthetic process [GO:0010686],intramolecular transferase activity [GO:0016866],arabidiol synthase activity [GO:0034075]; lyase activity [GO:0016829]; tricyclic triterpenoid biosynthetic process [GO:0010263]; triterpenoid biosynthetic process [GO:0016104],endoplasmic reticulum [GO:0005783]; marneral synthase activity [GO:0034074]; triterpenoid biosynthetic process [GO:0016104],lupeol synthase activity [GO:0042299]; oxidosqualene cyclase activity [GO:0031559],plasmodesma [GO:0009506]; lupeol synthase activity [GO:0042299],thalianol synthase activity [GO:0051746]; root development [GO:0048364]; thalianol metabolic process [GO:0080003]; tricyclic triterpenoid biosynthetic process [GO:0010263] TISSUE SPECIFICITY: Expressed primarily in the root epidermis. {ECO:0000269|PubMed:18356490}. locus:2130040;,locus:2129995;,locus:2163837;,locus:2202950;,locus:2158921;,locus:2162672; AT4G15370,AT3G29255,AT4G15340,AT5G42600,AT1G78500,AT5G36150,AT5G48010 pentacyclic triterpene synthase 3 NA NA NA NA NA NA NA ENOG411EAMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family NA NA NA NA NA NA NA ENOG411EAMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EAME MDK4.3,CPL5 Q9FL74,Q9LN24,Q9SI33,Q9LUP3,Q9ZVR2,Q9FHL1,F4JCB2,Q9LJN7 Q9FL74_ARATH,Q9LN24_ARATH,Q9SI33_ARATH,Q9LUP3_ARATH,Q9ZVR2_ARATH,Q9FHL1_ARATH,F4JCB2_ARATH,Q9LJN7_ARATH Gb|AAF34842.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),F14O10.8 protein (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g04930),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein,Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g02290),Gb|AAC78512.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),C-terminal domain phosphatase-like 5 (RNA polymerase II carboxy-terminal domain phosphatase-like protein) R-ATH-113418;R-ATH-674695;R-ATH-6796648; 35701,39514,32393,34373,35338,35571,69150,35185 Gb|AAF34842.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),F14O10.8 protein (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g04930),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein,Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g02290),Gb|AAC78512.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),C-terminal domain phosphatase-like 5 (RNA polymerase II carboxy-terminal domain phosphatase-like protein) DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; CTD phosphatase activity [GO:0008420]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940],DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] locus:2162565;,locus:2012943;,locus:2045044;,locus:2090467;,locus:2056256;,locus:2154458;,locus:2091221;,locus:4515103095; AT5G54210,AT1G20320,AT2G04930,AT3G17550,AT2G02290,AT5G23470,AT3G19600,AT3G19595 CPDc NA NA NA NA NA NA NA ENOG411EAMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TraB family NA NA NA NA NA NA NA ENOG411EAMG Q9MAA1 GDL49_ARATH GDSL esterase/lipase At3g05180 (EC 3.1.1.-) (Extracellular lipase At3g05180) ARA:AT3G05180-MONOMER; 3.1.1.- 42344 GDSL esterase/lipase At3g05180 (EC 3.1.1.-) (Extracellular lipase At3g05180) apoplast [GO:0048046]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042]; systemic acquired resistance [GO:0009627] locus:2096269; AT3G05180 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EAMF RSH4 Q9SY31,O64755 Q9SY31_ARATH,O64755_ARATH Root hair specific 4 (T17H7.17),At2g34910 (Root hair specific protein) (Uncharacterized protein At2g34910) 33686,32175 Root hair specific 4 (T17H7.17),At2g34910 (Root hair specific protein) (Uncharacterized protein At2g34910) locus:2196949;,locus:2044737; AT1G30850,AT2G34910 NA NA NA NA NA NA NA NA ENOG411EAMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0154300 protein A0A0P0WT42 A0A0P0WT42_ORYSJ Os06g0154300 OSNPB_060154300 ENOG411EAMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EAMQ UBA1A Q9SHZ6,F4IIL5 UBA1A_ARATH,F4IIL5_ARATH UBP1-associated proteins 1A (UBP1-interacting protein 1a),RNA-binding (RRM/RBD/RNP motifs) family protein FUNCTION: Acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus. However, unlike UBP1, UBA1A does not stimulate pre-mRNA splicing. {ECO:0000269|PubMed:12024044}. 36150,36736 UBP1-associated proteins 1A (UBP1-interacting protein 1a),RNA-binding (RRM/RBD/RNP motifs) family protein nucleus [GO:0005634]; RNA binding [GO:0003723],nucleus [GO:0005634]; AU-rich element binding [GO:0017091]; mRNA binding [GO:0003729]; mRNA stabilization [GO:0048255] locus:2055956; AT2G22090 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EAMP Q9C7M1,Q9FM91,Q9LJF9,Q3EA38,Q9LJF7,F4JEU6,A0A1I9LSS0,A0A1I9LRV1,A0A1P8AQZ2,A0A1I9LP85 FBD2_ARATH,FBD23_ARATH,FDL44_ARATH,FDL48_ARATH,Q9LJF7_ARATH,F4JEU6_ARATH,A0A1I9LSS0_ARATH,A0A1I9LRV1_ARATH,A0A1P8AQZ2_ARATH,A0A1I9LP85_ARATH Putative FBD-associated F-box protein At1g55030,Putative FBD-associated F-box protein At5g56400,F-box/FBD/LRR-repeat protein At3g26920,Putative F-box/FBD/LRR-repeat protein At4g13965,Protein with RNI-like/FBD-like domain,FBD / Leucine Rich Repeat domains containing protein,RNI-like superfamily protein,FBD, F-box and Leucine Rich Repeat domains containing protein 48145,52539,50306,48829,47007,35114,51897,39291,49309,45795 Putative FBD-associated F-box protein At1g55030,Putative FBD-associated F-box protein At5g56400,F-box/FBD/LRR-repeat protein At3g26920,Putative F-box/FBD/LRR-repeat protein At4g13965,Protein with RNI-like/FBD-like domain,FBD / Leucine Rich Repeat domains containing protein,RNI-like superfamily protein,FBD, F-box and Leucine Rich Repeat domains containing protein locus:2010950;,locus:2161023;,locus:2092671; AT1G55030,AT5G56400,AT3G26920,AT4G13965,AT3G26930 f-box family NA NA NA NA NA NA NA ENOG411EAMS Q9SZ60,Q8GYJ5 Q9SZ60_ARATH,Q8GYJ5_ARATH Transmembrane protein, putative (DUF1191) (Uncharacterized protein AT4g11950) (Uncharacterized protein F16J13.20),Transmembrane protein, putative (DUF1191) (Uncharacterized protein At4g22900) (Uncharacterized protein At4g22900/F7H19_80) 35845,37508 Transmembrane protein, putative (DUF1191) (Uncharacterized protein AT4g11950) (Uncharacterized protein F16J13.20),Transmembrane protein, putative (DUF1191) (Uncharacterized protein At4g22900) (Uncharacterized protein At4g22900/F7H19_80) integral component of membrane [GO:0016021] locus:2118026;,locus:2127248; AT4G11950,AT4G22900 Protein of unknown function (DUF1191) NA NA NA NA NA NA NA ENOG411EAMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive Os04g0582000 protein A0A0P0WDW2 A0A0P0WDW2_ORYSJ Os04g0582000 OSNPB_040582000 ENOG411EAMU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyruvate phosphate dikinase PEP/pyruvate binding domain NA NA NA NA NA NA NA ENOG411EAMT Q94CL5 Q94CL5_ARATH 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) ARA:AT5G12270-MONOMER; 40942 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:505006595; AT5G12270 oxidoreductase 2OG-Fe(II) oxygenase family protein NA NA NA NA NA NA NA ENOG411EAMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411EAMV KIB2,KIB1,KIB4,KIB3 Q9SU04,Q9SU05,Q9SRV0,Q9ZW91,Q9LUW3,A0A1I9LT98,A0A1I9LT96,F4J173,F4J172 KIB2_ARATH,KIB1_ARATH,KIB4_ARATH,KIB3_ARATH,Q9LUW3_ARATH,A0A1I9LT98_ARATH,A0A1I9LT96_ARATH,F4J173_ARATH,F4J172_ARATH F-box protein KIB2 (Protein KINK SUPPRESSED IN BZR1-1D 2),F-box/kelch-repeat protein KIB1 (Protein KINK SUPPRESSED IN BZR1-1D 1),F-box protein KIB4 (Protein KINK SUPPRESSED IN BZR1-1D 4),F-box protein KIB3 (Protein KINK SUPPRESSED IN BZR1-1D 3),F-box/kelch-repeat protein,F-box/kelch-repeat protein, putative (DUF295) DISRUPTION PHENOTYPE: Abolished brassinosteroid (BR)-induced ASK7/BIN2/SK21 degradation, and BR-insensitivity. Suppression of the constitutive BR-response phenotype in the dominant mutant bzr1-1D, and accumulation of phosphorylated BZR1. {ECO:0000269|PubMed:28575660}.,DISRUPTION PHENOTYPE: Abolished brassinosteroid (BR)-induced ASK7/BIN2/SK21 degradation, and severe BR-insensitivity. Suppression of the constitutive BR-response phenotype in the dominant mutant bzr1-1D, and accumulation of phosphorylated BZR1. {ECO:0000269|PubMed:28575660}. FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Required for brassinosteroid (BR) signal transduction. Mediates ASK7/BIN2/SK21 inactivation both by competing with substrate binding (e.g. BZR1) and by promoting its ubiquitination and subsequent proteasomal degradation. {ECO:0000269|PubMed:28575660}. 50997,44034,44836,51240,38754,24114,19836,33071,30009 F-box protein KIB2 (Protein KINK SUPPRESSED IN BZR1-1D 2),F-box/kelch-repeat protein KIB1 (Protein KINK SUPPRESSED IN BZR1-1D 1),F-box protein KIB4 (Protein KINK SUPPRESSED IN BZR1-1D 4),F-box protein KIB3 (Protein KINK SUPPRESSED IN BZR1-1D 3),F-box/kelch-repeat protein,F-box/kelch-repeat protein, putative (DUF295) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; brassinosteroid mediated signaling pathway [GO:0009742]; positive regulation of brassinosteroid mediated signaling pathway [GO:1900459]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, flower buds and flowers. {ECO:0000269|PubMed:28575660}. locus:2135833;,locus:2135823;,locus:2079399;,locus:2033676;,locus:4515103106;,locus:4515103019; AT4G12820,AT4G12810,AT3G03730,AT1G67160,AT3G22345,AT3G03726 f-box family NA NA NA NA NA NA NA ENOG411E888 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQTY CPA O82631,F4J7C4,A0A1I9LMY3 CAPZA_ARATH,F4J7C4_ARATH,A0A1I9LMY3_ARATH F-actin-capping protein subunit alpha (CapZ alpha),Subunits of heterodimeric actin filament capping protein Capz superfamily FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments (By similarity). {ECO:0000250}.,FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. {ECO:0000256|SAAS:SAAS00943449}. R-ATH-983231; 35038,43574,38241 F-actin-capping protein subunit alpha (CapZ alpha),Subunits of heterodimeric actin filament capping protein Capz superfamily F-actin capping protein complex [GO:0008290]; actin binding [GO:0003779]; barbed-end actin filament capping [GO:0051016],F-actin capping protein complex [GO:0008290]; nucleus [GO:0005634]; actin binding [GO:0003779]; actin cytoskeleton organization [GO:0030036]; actin filament capping [GO:0051693]; actin filament organization [GO:0007015]; barbed-end actin filament capping [GO:0051016] locus:2079757; AT3G05520 F-actin-capping protein subunit Os07g0414800 protein (Fragment) Q0D701 Q0D701_ORYSJ Os07g0414800 Os07g0414800 OSNPB_070414800 FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. {ECO:0000256|SAAS:SAAS00943449}. ENOG411DQTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Os09g0572500 protein (cDNA clone:002-131-E08, full insert sequence) Q0IZF3 Q0IZF3_ORYSJ Os09g0572500 Os09g0572500 OSNPB_090572500 ENOG411DQTZ MHK10.21 Q8L866 Q8L866_ARATH Amine oxidase (EC 1.4.3.-) ARA:GQT-1154-MONOMER; 1.4.3.21; 1.4.3.- 86691 Amine oxidase (EC 1.4.3.-) peroxisome [GO:0005777]; copper ion binding [GO:0005507]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; amine metabolic process [GO:0009308] locus:2041589; AT2G42490 amine oxidase Amine oxidase (EC 1.4.3.-) (Fragment),Amine oxidase (EC 1.4.3.-) Q0JCE5,A0A0P0WBN3,A0A0P0WBB8,A0A0P0VLA0,A0A0P0W6Y1 Q0JCE5_ORYSJ,A0A0P0WBN3_ORYSJ,A0A0P0WBB8_ORYSJ,A0A0P0VLA0_ORYSJ,A0A0P0W6Y1_ORYSJ Os04g0476100 Os04g0476100 OSNPB_040476100,Os04g0476100 OSNPB_040476100,Os02g0593100 OSNPB_020593100,Os04g0136200 OSNPB_040136200 ENOG411DQTU PRMT10 Q9MAT5 ANM10_ARATH Protein arginine N-methyltransferase PRMT10 (EC 2.1.1.319) This mutant has delayed flowering compared to wild type plants when grown under long day conditions. Analysis of growth under short day conditions indicates that these mutants are not disrupted in the photoperiod pathway. They also seem to be able to respond to vernalization signals and to gibberellin. But they have an impaired autonomous pathway to flowering. FLC transcripts are up-regulated and SOC1 transcripts are down-regulated in these mutants through an unknown mechanism. There are no discernible changes in several types of histone modifications examined at the FLC locus in this mutant background nor are there changes in transcript levels for several autonomous pathway genes.,This mutant has delayed flowering compared to wild type plants when grown under long day conditions. Late flowering-X. Cao-2007 FUNCTION: Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. Essential for regulating flowering time. {ECO:0000269|PubMed:21986201}. 2.1.1.125; 2.1.1.319 43130 Protein arginine N-methyltransferase PRMT10 (EC 2.1.1.319) cytosol [GO:0005829]; [myelin basic protein]-arginine N-methyltransferase activity [GO:0016277]; histone-arginine N-methyltransferase activity [GO:0008469]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; protein-arginine omega-N monomethyltransferase activity [GO:0035241]; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine [GO:0019919]; regulation of transcription, DNA-templated [GO:0006355]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2010607; AT1G04870 arginine N-methyltransferase NA NA NA NA NA NA NA ENOG411DQTV RWA4,RWA3,RWA1,RWA2 Q9FXG3,Q66GQ5,Q8L7C8,Q0WW17,A0A1P8AVG6,A0A1P8BCX3 RWA4_ARATH,RWA3_ARATH,RWA1_ARATH,RWA2_ARATH,A0A1P8AVG6_ARATH,A0A1P8BCX3_ARATH Protein REDUCED WALL ACETYLATION 4 (EC 2.3.1.-),Protein REDUCED WALL ACETYLATION 3 (EC 2.3.1.-),Protein REDUCED WALL ACETYLATION 1 (EC 2.3.1.-),Protein REDUCED WALL ACETYLATION 2 (EC 2.3.1.-),O-acetyltransferase family protein DISRUPTION PHENOTYPE: No visible phenotype on cell wall acetylation in single mutant (PubMed:21212300). Severe growth phenotypes (e.g. dwarf and abnormal flower organs) associated with reduction in the secondary wall thickening and the stem mechanical strength in the quadruple mutant rwa1 rwa2 rwa3 rwa4 and characterized by reduced xylan acetylation and altered ratio of non-methylated to methylated glucuronic acid side chains. Absence of interfascicular fibers and xylem cells differentiation (PubMed:21673009, PubMed:24019426). The double mutant rwa2 rwa4 and triple mutants rwa2 rwa3 rwa4, rwa1 rwa3 rwa4 and rwa1 rwa2 rwa4 are also dwarfs with abnormal morphology. Altered O-acetylated xyloglucans (XyG) oligosaccharides (XyGOs) composition (PubMed:24019426). {ECO:0000269|PubMed:21212300, ECO:0000269|PubMed:21673009, ECO:0000269|PubMed:24019426}.,DISRUPTION PHENOTYPE: No visible phenotype on cell wall acetylation in single mutant (PubMed:21212300). Severe growth phenotypes (e.g. dwarf and abnormal flower organs) associated with reduction in the secondary wall thickening and the stem mechanical strength in the quadruple mutant rwa1 rwa2 rwa3 rwa4 and characterized by reduced xylan acetylation and altered ratio of non-methylated to methylated glucuronic acid side chains. Absence of interfascicular fibers and xylem cells differentiation (PubMed:21673009, PubMed:24019426). The triple mutants rwa1 rwa2 rwa3, rwa1 rwa3 rwa4 and rwa2 rwa3 rwa4 are also dwarfs with abnormal morphology. Altered O-acetylated xyloglucans (XyG) oligosaccharides (XyGOs) composition (PubMed:24019426). {ECO:0000269|PubMed:21212300, ECO:0000269|PubMed:21673009, ECO:0000269|PubMed:24019426}.,DISRUPTION PHENOTYPE: No visible phenotype on cell wall acetylation in single mutant (PubMed:21212300). Severe growth phenotypes (e.g. dwarf and abnormal flower organs) associated with reduction in the secondary wall thickening and the stem mechanical strength in the quadruple mutant rwa1 rwa2 rwa3 rwa4 and characterized by reduced xylan acetylation and altered ratio of non-methylated to methylated glucuronic acid side chains. Absence of interfascicular fibers and xylem cells differentiation (PubMed:21673009, PubMed:24019426). The triple mutants rwa1 rwa2 rwa3, rwa1 rwa3 rwa4 and rwa1 rwa2 rwa4 are also dwarfs with abnormal morphology. Altered O-acetylated xyloglucans (XyG) oligosaccharides (XyGOs) composition (PubMed:24019426). {ECO:0000269|PubMed:21212300, ECO:0000269|PubMed:21673009, ECO:0000269|PubMed:24019426}.,DISRUPTION PHENOTYPE: Decreased levels of acetylated cell wall polymers and lower amounts of acetic acid in single mutant. Increased tolerance toward the necrotrophic fungal pathogen Botrytis cinerea (PubMed:21212300). Severe growth phenotypes (e.g. dwarf and abnormal flower organs) associated with reduction in the secondary wall thickening and the stem mechanical strength in the quadruple mutant rwa1 rwa2 rwa3 rwa4 and characterized by reduced xylan acetylation and altered ratio of non-methylated to methylated glucuronic acid side chains. Absence of interfascicular fibers and xylem cells differentiation (PubMed:21673009, PubMed:24019426). The double mutant rwa2 rwa4 and triple mutants rwa2 rwa3 rwa4, rwa1 rwa2 rwa3 and rwa1 rwa2 rwa4 are also dwarfs with abnormal morphology. Altered O-acetylated xyloglucans (XyG) oligosaccharides (XyGOs) composition (PubMed:24019426). {ECO:0000269|PubMed:21212300, ECO:0000269|PubMed:21673009, ECO:0000269|PubMed:24019426}. FUNCTION: Probable O-acetyltransferase involved in the acetylation of xylan during secondary wall biosynthesis. {ECO:0000269|PubMed:21673009, ECO:0000269|PubMed:24019426}.,FUNCTION: Probable O-acetyltransferase involved in the acetylation of cell wall polymers (both pectic and nonpectic polysaccharides) and of xylan during secondary wall biosynthesis. Catalyzes the O-acetylation of xyloglucan. {ECO:0000269|PubMed:21212300, ECO:0000269|PubMed:21673009, ECO:0000269|PubMed:24019426}.; FUNCTION: Seems required for infection by the necrotrophic fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:21212300}. 2.3.1.- 63313,63331,63336,63612,63870,55612 Protein REDUCED WALL ACETYLATION 4 (EC 2.3.1.-),Protein REDUCED WALL ACETYLATION 3 (EC 2.3.1.-),Protein REDUCED WALL ACETYLATION 1 (EC 2.3.1.-),Protein REDUCED WALL ACETYLATION 2 (EC 2.3.1.-),O-acetyltransferase family protein Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; transferase activity [GO:0016740]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan acetylation [GO:1990937]; xylan biosynthetic process [GO:0045492]; xylan metabolic process [GO:0045491],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; transferase activity [GO:0016740]; defense response to fungus [GO:0050832]; plant-type secondary cell wall biogenesis [GO:0009834]; polysaccharide metabolic process [GO:0005976]; response to abscisic acid [GO:0009737]; xylan acetylation [GO:1990937]; xylan biosynthetic process [GO:0045492]; xylan metabolic process [GO:0045491]; xyloglucan metabolic process [GO:0010411],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] TISSUE SPECIFICITY: Expressed in cells undergoing secondary wall thickeningin a SND1-dependent manner, such as xylem cells and interfascicular fibers. Mostly expressed in the middle and bottom parts of the inflorescence stems (PubMed:21673009). Mainly observed in the more mature parts of inflorescence stems, but present ubiquitously (PubMed:21212300). {ECO:0000269|PubMed:21212300, ECO:0000269|PubMed:21673009}.,TISSUE SPECIFICITY: Expressed in cells undergoing secondary wall thickeningin a SND1-dependent manner, such as xylem cells. Slightly elevated in the inflorescence stems (PubMed:21673009). Mainly observed in leaves and inflorescence stem tops, but present ubiquitously (PubMed:21212300). {ECO:0000269|PubMed:21212300, ECO:0000269|PubMed:21673009}. locus:2019307;,locus:2062340;,locus:2170493;,locus:2084279; AT1G29890,AT2G34410,AT5G46340,AT3G06550 CAS1 domain-containing protein O-acetyltransferase-like (Os01g0631100 protein),Os05g0582100 protein,O-acetyltransferase, putative, expressed (Os03g0314200 protein) (cDNA clone:J023119N22, full insert sequence),Os05g0582100 protein (Fragment) Q5ZCH7,Q6L5D7,Q10MC5,A0A0P0WQR5 Q5ZCH7_ORYSJ,Q6L5D7_ORYSJ,Q10MC5_ORYSJ,A0A0P0WQR5_ORYSJ B1158C05.2-1 Os01g0631100 OSJNBb0035I14.20-1 OSNPB_010631100,OJ1651_G11.8 Os05g0582100 OSNPB_050582100,Os03g0314200 LOC_Os03g19970 Os03g0314200 OSNPB_030314200,Os05g0582100 OSNPB_050582100 ENOG411DQTQ MOP9.16,MNC6.4,MJC20.11 Q9FNF0,Q9FJD3,Q9FHY2,Q8VZK1,A0A1P8BA68,F4KH31 Q9FNF0_ARATH,Q9FJD3_ARATH,Q9FHY2_ARATH,Q8VZK1_ARATH,A0A1P8BA68_ARATH,F4KH31_ARATH Similarity to unknown protein (Transducin/WD40 repeat-like superfamily protein),Similarity to unknown protein (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At5g53500),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At1g64610),Transducin/WD40 repeat-like superfamily protein 76817,72450,79081,72305,64114,77319 Similarity to unknown protein (Transducin/WD40 repeat-like superfamily protein),Similarity to unknown protein (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At5g53500),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At1g64610),Transducin/WD40 repeat-like superfamily protein locus:2168606;,locus:2165700;,locus:2019494;,locus:2169769; AT5G24320,AT5G53500,AT5G42010,AT1G64610 WD-40 repeat family protein Os04g0568400 protein (cDNA clone:J033132E13, full insert sequence) Q0JAY4 Q0JAY4_ORYSJ Os04g0568400 Os04g0568400 OSNPB_040568400 ENOG411DQTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beige/BEACH domain Os04g0555500 protein (Fragment) Q0JB56 Q0JB56_ORYSJ Os04g0555500 Os04g0555500 OSNPB_040555500 ENOG411DQTN NPR4,NPR3,NPR1,NPR2 Q5ICL9,Q8L746,P93002,Q9SZI3,A0A1P8B3C8,A0A1P8BAP1,A0A1P8B8B0 NPR4_ARATH,NPR3_ARATH,NPR1_ARATH,NPR2_ARATH,A0A1P8B3C8_ARATH,A0A1P8BAP1_ARATH,A0A1P8B8B0_ARATH Regulatory protein NPR4 (BTB/POZ domain-containing protein NPR4),Regulatory protein NPR3 (BTB/POZ domain-containing protein NPR3),Regulatory protein NPR1 (BTB/POZ domain-containing protein NPR1) (Non-inducible immunity protein 1) (Nim1) (Nonexpresser of PR genes 1) (Salicylic acid insensitive 1) (Sai1),Regulatory protein NPR2 (BTB/POZ domain-containing protein NPR2),NPR1-like protein 4,NPR1-like protein 3,Ankyrin repeat family protein / BTB/POZ domain-containing protein DISRUPTION PHENOTYPE: Enhanced susceptibility to the virulent bacterial pathogen Pseudomonas syringe and to the fungal pathogen Erysiphe cichoracearum (powdery mildew). {ECO:0000269|PubMed:15634206}.,DISRUPTION PHENOTYPE: Elevated PR-1 expression level and enhanced resistance to Hyaloperonospora parasitica. {ECO:0000269|PubMed:17076807}. The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance.,dwarf. Increased salicyclic acid level. Complete loss of systemic acquired resistance; Susceptible to disease-J. Ryals-1995 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in the regulation of basal defense responses against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. {ECO:0000250, ECO:0000269|PubMed:15634206, ECO:0000269|PubMed:17076807}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in the regulation of basal defense responses against pathogens. {ECO:0000250, ECO:0000269|PubMed:17076807}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Key positive regulator of the SA-dependent signaling pathway that negatively regulates JA-dependent signaling pathway. Mediates the binding of TGA factors to the as-1 motif found in the pathogenesis-related PR-1 gene, leading to the transcriptional regulation of the gene defense. Controls the onset of systemic acquired resistance (SAR). Upon SAR induction, a biphasic change in cellular reduction potential occurs, resulting in reduction of the cytoplasmic oligomeric form to a monomeric form that accumulates in the nucleus and activates gene expression. Phosphorylated form is target of proteasome degradation. {ECO:0000250, ECO:0000269|PubMed:11607555, ECO:0000269|PubMed:12615947, ECO:0000269|PubMed:12837250, ECO:0000269|PubMed:12897257, ECO:0000269|PubMed:12953119, ECO:0000269|PubMed:9002272, ECO:0000269|PubMed:9019406}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 65115,66061,66032,68006,68221,57747,68138 Regulatory protein NPR4 (BTB/POZ domain-containing protein NPR4),Regulatory protein NPR3 (BTB/POZ domain-containing protein NPR3),Regulatory protein NPR1 (BTB/POZ domain-containing protein NPR1) (Non-inducible immunity protein 1) (Nim1) (Nonexpresser of PR genes 1) (Salicylic acid insensitive 1) (Sai1),Regulatory protein NPR2 (BTB/POZ domain-containing protein NPR2),NPR1-like protein 4,NPR1-like protein 3,Ankyrin repeat family protein / BTB/POZ domain-containing protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; salicylic acid binding [GO:1901149]; ubiquitin protein ligase binding [GO:0031625]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to fungus [GO:0050832]; defense response to fungus, incompatible interaction [GO:0009817]; effector dependent induction by symbiont of host immune response [GO:0080185]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of proteolysis [GO:0030162]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; systemic acquired resistance [GO:0009627],cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; salicylic acid binding [GO:1901149]; ubiquitin protein ligase binding [GO:0031625]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to fungus, incompatible interaction [GO:0009817]; effector dependent induction by symbiont of host immune response [GO:0080185]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of proteolysis [GO:0030162]; systemic acquired resistance [GO:0009627],cytoplasm [GO:0005737]; nucleus [GO:0005634]; defense response to fungus [GO:0050832]; induced systemic resistance [GO:0009682]; negative regulation of defense response [GO:0031348]; plant-type hypersensitive response [GO:0009626]; positive regulation of transcription, DNA-templated [GO:0045893]; protein ubiquitination [GO:0016567]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; regulation of systemic acquired resistance [GO:0010112]; response to bacterium [GO:0009617]; response to heat [GO:0009408]; response to hypoxia [GO:0001666]; response to insect [GO:0009625]; response to wounding [GO:0009611]; systemic acquired resistance [GO:0009627]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862],protein ubiquitination [GO:0016567]; response to chitin [GO:0010200] locus:2133925;,locus:2153192;,locus:2014200;,locus:2120800; AT4G19660,AT5G45110,AT1G64280,AT4G26120 Regulatory protein BTB/POZ domain and ankyrin repeat-containing protein NPR1 (OsNPR1) (NPR1 homolog 1) (OsNH1),BTB/POZ domain and ankyrin repeat-containing protein NPR2 (OsNPR2) (NPR1 homolog 2) (OsNH2) Q9FDY4,Q0JJ01 NPR1_ORYSJ,NPR2_ORYSJ NPR1 NH1 Os01g0194300 LOC_Os01g09800 P0001B06.13 P0671B11.44,NPR2 NH2 Os01g0767900 LOC_Os01g56200 B1143G03.10 OSJNBb0053G03.24 FUNCTION: Key positive factor of disease resistance. Plays an essential role in benzothiadiazole (BTH)-induced resistance to the blast fungus disease caused by Magnaporthe oryzae (PubMed:20924648). Involved in defense response against the bacterial blight disease caused by Xanthomonas oryzae pv. oryzae (Xoo). Over-expression of NPR1/NH1 confers disease resistance to Xoo, but also enhances herbivore susceptibility (PubMed:17309686). Functions as a transcriptional coactivator of TGA2.1 and LG2 in vitro (PubMed:22353606). Involved in defense response against herbivore. Plants silencing NPR1/NH1 have increased herbivore-induced trypsin proteinase inhibitors and volatiles, which reduces the performance of the striped stem borer (SSB) Chilo suppressalis (PubMed:22694163). {ECO:0000269|PubMed:17309686, ECO:0000269|PubMed:20924648, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:22694163}.,FUNCTION: Does not seem to be involved in defense response against the bacterial blight disease caused by Xanthomonas oryzae pv. oryzae (Xoo). Over-expression of NPR2/NH2 does not confer disease resistance to Xoo. {ECO:0000269|PubMed:17309686}. ENOG411DQTI Q67YR4,Q9C583 Q67YR4_ARATH,Q9C583_ARATH Protein kinase superfamily protein (Somatic embryogenesis receptor-like kinase-like protein) 35303,34482 Protein kinase superfamily protein (Somatic embryogenesis receptor-like kinase-like protein) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] locus:504956438; AT5G22050 receptor-like protein kinase Os07g0159700 protein (Fragment) A0A0P0X3A4 A0A0P0X3A4_ORYSJ Os07g0159700 OSNPB_070159700 ENOG411DQTK MNS1,MNS2 Q9C512,Q8H116,A0A1I9LRE8 MNS1_ARATH,MNS2_ARATH,A0A1I9LRE8_ARATH Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 (AtMANIb) (EC 3.2.1.113) (Alpha-mannosidase IB),Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 (AtMANIa) (EC 3.2.1.113) (Alpha-mannosidase IA),alpha-1,2-Mannosidase (EC 3.2.1.-) DISRUPTION PHENOTYPE: No visible phenotype; due the redundancy with MNS2. Lack of complex N-glycans, shorter roots and increased lateral root formation in mns1 and mns2 double mutants. {ECO:0000269|PubMed:19914916, ECO:0000269|PubMed:20023195}.,DISRUPTION PHENOTYPE: No visible phenotype; due the redundancy with MNS1. Lack of complex N-glycans, shorter roots and increased lateral root formation in mns1 and mns2 double mutants. {ECO:0000269|PubMed:19914916, ECO:0000269|PubMed:20023195}. FUNCTION: Class I alpha-mannosidase essential for early N-glycan processing. Progressively trim alpha-1,2-linked mannose residues. Produces Man(5)GlcNAc(2) from Man(8)GlcNAc(2), but only Man(6)GlcNAc(2) from Man(9)GlcNAc(2). Have difficulty acting on the terminal mannose of the b-branch. Involved in root development and cell wall biosynthesis. {ECO:0000269|PubMed:19914916, ECO:0000269|PubMed:20023195}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT1G51590-MONOMER;,ARA:AT3G21160-MONOMER; R-ATH-964827; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 3.2.1.113,3.2.1.- 63532,65136,45809 Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 (AtMANIb) (EC 3.2.1.113) (Alpha-mannosidase IB),Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 (AtMANIa) (EC 3.2.1.113) (Alpha-mannosidase IA),alpha-1,2-Mannosidase (EC 3.2.1.-) endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; alpha-mannosidase activity [GO:0004559]; calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]; N-glycan processing [GO:0006491]; protein glycosylation [GO:0006486],integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in flowers, siliques, stems, leaves, roots, pollen grains, shoot apical meristems, hypocotyls and upper region of the root. {ECO:0000269|PubMed:19914916, ECO:0000269|PubMed:20023195}.,TISSUE SPECIFICITY: Expressed in flowers, siliques, stems, leaves, roots, pollen grains and shoot apical meristems. {ECO:0000269|PubMed:19914916, ECO:0000269|PubMed:20023195}. locus:2017597;,locus:2092965; AT1G51590,AT3G21160 mannosyl-oligosaccharide 12-alpha-mannosidase alpha-1,2-Mannosidase (EC 3.2.1.-),alpha-1,2-Mannosidase (EC 3.2.1.-) (Fragment) Q7X6B1,A0A0P0WEF4 Q7X6B1_ORYSJ,A0A0P0WEF4_ORYSJ Os04g0606400 Os04g0606400 OsJ_16076 OSJNBa0035M09.7 OSNPB_040606400,Os04g0606400 OSNPB_040606400 ENOG411DQTE Q9LZQ9,O22899,Q9LFR5,A0A1I9LLI5,A0A1I9LLI6 DEAH2_ARATH,PRP43_ARATH,Q9LFR5_ARATH,A0A1I9LLI5_ARATH,A0A1I9LLI6_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43),Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43),Helicase associated (HA2) domain-containing protein (Uncharacterized protein F2G14_20),RNA helicase family protein FUNCTION: May be involved in pre-mRNA splicing. {ECO:0000305}. R-ATH-72163; 3.6.4.13 82694,82654,34743,64323,60830 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43),Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43),Helicase associated (HA2) domain-containing protein (Uncharacterized protein F2G14_20),RNA helicase family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA processing [GO:0006396]; RNA splicing [GO:0008380],chloroplast envelope [GO:0009941]; cytoplasm [GO:0005737]; membrane [GO:0016020]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA processing [GO:0006396]; RNA splicing [GO:0008380],cytoplasm [GO:0005737]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA processing [GO:0006396],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2095989;,locus:2065210;,locus:2147785; AT3G62310,AT2G47250,AT5G14900 Pre-mRNA-splicing factor ATP-dependent RNA Os03g0314100 protein (Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed) (cDNA clone:J013000K17, full insert sequence),Os03g0314100 protein (Fragment),Os08g0199900 protein Q10MC6,A0A0P0VWP5,A0A0P0XCN7 Q10MC6_ORYSJ,A0A0P0VWP5_ORYSJ,A0A0P0XCN7_ORYSJ LOC_Os03g19960 Os03g0314100 OSNPB_030314100,Os03g0314100 OSNPB_030314100,Os08g0199900 OSNPB_080199900 ENOG411DQTD NAC031 Q9S851 NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 (NAC domain-containing protein 31) (ANAC031) (NAC domain-containing protein CUC3) High frequency production of cup-shaped cotyledons in seedlings most form a primary shoot.,Production of the first pair of leaf primordia is significantly delayed compared to the wild type. This likely reflects a defect in embryonic shoot meristem initiation.,High frequency of production of cup-shaped cotyledons in seedlings more than half fail to produce primary shoots.,12% of seedlings have cotyledons partially fused along one side (heart-shaped cotyledons). Partially fused cotyledons-M. Tasaka-2006 FUNCTION: Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. 38018 Protein CUP-SHAPED COTYLEDON 3 (NAC domain-containing protein 31) (ANAC031) (NAC domain-containing protein CUC3) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; meristem initiation [GO:0010014]; multicellular organism development [GO:0007275]; organ boundary specification between lateral organs and the meristem [GO:0010199]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. TISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:12837947}. locus:2011736; AT1G76420 Protein CUP-SHAPED COTYLEDON Os08g0511200 protein A0A0P0XHX1 A0A0P0XHX1_ORYSJ Os08g0511200 OSNPB_080511200 ENOG411DQTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Converts alpha-aldose to the beta-anomer. It is active on D-glucose L-arabinose D-xylose D-galactose maltose and lactose (By similarity) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase) Q69JW7 Q69JW7_ORYSJ Os02g0575800 B1342F01.3 OSNPB_020575800 P0703B01.24 FUNCTION: Converts alpha-aldose to the beta-anomer. {ECO:0000256|PIRNR:PIRNR005096}. ENOG411DQTF T8G24.9 Q9C6U2 Q9C6U2_ARATH Delta-latroinsectotoxin-Lt1a protein (Uncharacterized protein T8G24.9) 31217 Delta-latroinsectotoxin-Lt1a protein (Uncharacterized protein T8G24.9) integral component of membrane [GO:0016021] locus:2103454; AT3G08490 NA Expressed protein (Os03g0216500 protein) Q10PY9 Q10PY9_ORYSJ Os03g0216500 LOC_Os03g11710 Os03g0216500 OsJ_09921 OSNPB_030216500 ENOG411DQTA FLU Q940U6,F4JFR2,F4JFR1 FLU_ARATH,F4JFR2_ARATH,F4JFR1_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic,Tetratricopeptide repeat (TPR)-like superfamily protein DISRUPTION PHENOTYPE: Loss of ability to restrict the accumulation of protochloro-phyllide (Pchlide) and delta-amin-olevulinic acid (ALA) in the dark, leading to a strong Pchlide fluorescence in etiolated mutant seedlings exposed to blue light. Rapid bleaching and death of plants transferred from the dark to the light, mediated by singlet oxygen production and enzymatic peroxidation of linolenic acid. {ECO:0000269|PubMed:11606728, ECO:0000269|PubMed:14508004, ECO:0000269|PubMed:15584960, ECO:0000269|PubMed:18182022}. Once they were transferred to the long day conditions (after being grown in constant light until they reached the rosette leaf stage and were ready to bolt) the mutant plants continued to grow similarly to wild type except that their growth was slightly reduced and their final height was ~80% of that of wild type.,Under continuous light the mutant plants grew equally well compared to wild type and finally reached the same height.,When mature plants grown under continuous light were shifted to the dark for 8 h free protochlorophyllide accumulated in the mutant to similar levels in rosette leaves and were 3- to 4-fold higher than in wild-type controls.,Once they were transferred to the long day conditions (after being grown in constant light until they reached the rosette leaf stage and were ready to bolt) the mutant plants stopped growing.,Two singlet O2-induced visible stress reactions were observed in mutant plants after a dark-to-light shift: a cell-death response and the rapid inhibition of growth.,Strong protochlorophyllide fluorescence that etiolated mutant seedlings emit after they have been exposed to blue light.,Accumulates protochlorophyllide in dark. Upon illumination produces excited singlet oxygen and developes necrotic lesions. Seedling lethal unless grown under continuous light; Elevated protochlorophyllide levels in the dark-K. Apel-2002 FUNCTION: Negative regulator of tetrapyrrole biosynthesis (including chlorophyll) in chloroplasts, probably via HEMA1 repression. Inhibits especially the magnesium ion Mg(2+) branch of tetrapyrrole biosynthesis, but independently of heme. {ECO:0000269|PubMed:11606728, ECO:0000269|PubMed:14508004, ECO:0000269|PubMed:15584960, ECO:0000269|PubMed:18182022}. 34587,25719,34686 Protein FLUORESCENT IN BLUE LIGHT, chloroplastic,Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; protein complex [GO:0043234]; chlorophyll biosynthetic process [GO:0015995]; oxylipin biosynthetic process [GO:0031408] locus:2087467; AT3G14110 protein FLUORESCENT IN BLUE LIGHT Os01g0510600 protein (Tetratricopeptide repeat(TPR)-containing protein-like) (cDNA clone:001-039-H05, full insert sequence) Q8LRH2 Q8LRH2_ORYSJ Os01g0510600 OsJ_01968 OSNPB_010510600 P0520B06.17 ENOG411DQTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Indole-3-glycerol phosphate lyase Indole-3-glycerol phosphate lyase, chloroplast, putative, expressed (Os03g0797400 protein) (Putative indole-3-glycerol phosphate lyase) (cDNA clone:J023125E11, full insert sequence),Indole-3-glycerol phosphate lyase, chloroplast, putative, expressed (Os03g0797500 protein) (Os03g0797550 protein) (Putative indole-3-glycerol phosphate lyase) Q7Y1I9,Q7Y1J1 Q7Y1I9_ORYSJ,Q7Y1J1_ORYSJ OSJNBa0094F01.14 LOC_Os03g58300 Os03g0797400 OSNPB_030797400,OSJNBa0094F01.12 Os03g0797500 LOC_Os03g58320 Os03g0797550 OSNPB_030797500 ENOG411DQT9 PLIM2B,PLIM2A Q1ECF5,O80839 PLI2B_ARATH,PLI2A_ARATH LIM domain-containing protein PLIM2b (Pollen-expressed LIM protein 2B),LIM domain-containing protein PLIM2a (Pollen-expressed LIM protein 2) (AtPLIM2) FUNCTION: Binds to actin filaments and promotes cross-linking into thick bundles. Has an actin-stabilizing activity. The actin regulatory activities are inhibited by pH > 6.8 but are [Ca(2+)] independent. {ECO:0000269|PubMed:20817848}. MISCELLANEOUS: Cross-links actin with a constant of dissociation of 1.7 uM. {ECO:0000269|PubMed:20817848}.,MISCELLANEOUS: Cross-links actin with a constant of dissociation of 1.3 uM. {ECO:0000269|PubMed:20817848}. 22989,24943 LIM domain-containing protein PLIM2b (Pollen-expressed LIM protein 2B),LIM domain-containing protein PLIM2a (Pollen-expressed LIM protein 2) (AtPLIM2) cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin filament binding [GO:0051015]; metal ion binding [GO:0046872]; actin filament bundle assembly [GO:0051017] TISSUE SPECIFICITY: Predominantly expressed in flowers and in pollen grains. Detected in vasculature and roots. {ECO:0000269|PubMed:20817848}.,TISSUE SPECIFICITY: Predominantly expressed in flowers, in the tapetum and in pollen grains. Detected in leaves and stems. {ECO:0000269|PubMed:11085265, ECO:0000269|PubMed:17905860, ECO:0000269|PubMed:20817848}. locus:2198210;,locus:2050735; AT1G01780,AT2G45800 LIM domain-containing protein NA NA NA NA NA NA NA ENOG411DQT8 APC10 Q9ZPW2 APC10_ARATH Anaphase-promoting complex subunit 10 (APC10) (Cyclosome subunit 10) Embryo defective-D. Meinke-2008 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating the ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several other aspects of development. Involved in the control of endoreduplication. PATHWAY: Protein modification; protein ubiquitination. R-ATH-174184; 21750 Anaphase-promoting complex subunit 10 (APC10) (Cyclosome subunit 10) anaphase-promoting complex [GO:0005680]; nuclear body [GO:0016604]; anaphase-promoting complex-dependent catabolic process [GO:0031145]; cell cycle [GO:0007049]; cell division [GO:0051301]; cell proliferation [GO:0008283]; negative regulation of DNA endoreduplication [GO:0032876]; phloem or xylem histogenesis [GO:0010087]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein K11-linked ubiquitination [GO:0070979]; regulation of DNA endoreduplication [GO:0032875] locus:2062106; AT2G18290 anaphase-promoting complex subunit Anaphase-promoting complex subunit 10 Q688U0 Q688U0_ORYSJ Os05g0579800 OSJNBa0017N18.11 OSNPB_050579800 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. {ECO:0000256|PIRNR:PIRNR028841}. ENOG411DQT5 ARL2 Q9ZPX1 ARF5_ARATH ADP-ribosylation factor-like protein 2 (Protein ARF-like 2) (Protein HALLIMASCH) (Protein TITAN 5) DISRUPTION PHENOTYPE: Embryo lethality. Embryo development limited to the formation of a few giant cells lacking microtubules but not actin filaments. Failure to localize KNOLLE in mitotic cells. Giant nuclei and nucleoli found in both the embryo and endosperm tissue. {ECO:0000269|PubMed:10948257, ECO:0000269|PubMed:11959844}. Embryo defective; Preglobular; Enlarged embryo cells and endosperm nuclei-D. Meinke-2002 FUNCTION: Has a role in the cofactor-dependent pathway of microtubule biogenesis. Not essential for cell viability. May play a regulatory role in sequestring TFCD. {ECO:0000269|PubMed:10099932, ECO:0000269|PubMed:10948257, ECO:0000269|PubMed:11959844}. MISCELLANEOUS: Belongs to the PILZ group of genes that disrupt, when mutated, the microtubule cytoskeleton and produce mushroom-shaped ('pilz' in German) embryos. 21077 ADP-ribosylation factor-like protein 2 (Protein ARF-like 2) (Protein HALLIMASCH) (Protein TITAN 5) cytoplasm [GO:0005737]; GTP binding [GO:0005525]; embryo development ending in seed dormancy [GO:0009793]; embryo sac cellularization [GO:0009558]; endosperm development [GO:0009960]; small GTPase mediated signal transduction [GO:0007264]; tubulin complex assembly [GO:0007021] TISSUE SPECIFICITY: Expressed in seedlings, leaves, roots and inflorescences. {ECO:0000269|PubMed:10948257}. locus:2062085; AT2G18390 ADP-ribosylation factor Os02g0327100 protein Q0E1L4 Q0E1L4_ORYSJ Os02g0327100 Os02g0327100 OsJ_06509 OSNPB_020327100 ENOG411DQT4 Q8L7V3,Q6NPR7,Q0WT31,Q9SD39,A0A1I9LMQ3 PMTQ_ARATH,PMTO_ARATH,PMTP_ARATH,PMTR_ARATH,A0A1I9LMQ3_ARATH Probable methyltransferase PMT26 (EC 2.1.1.-),Probable methyltransferase PMT24 (EC 2.1.1.-),Probable methyltransferase PMT25 (EC 2.1.1.-),Probable methyltransferase PMT27 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein MISCELLANEOUS: This gene overlaps with At3g51075, a potential natural antisense gene. 2.1.1.- 93049,87205,86881,101444,94284 Probable methyltransferase PMT26 (EC 2.1.1.-),Probable methyltransferase PMT24 (EC 2.1.1.-),Probable methyltransferase PMT25 (EC 2.1.1.-),Probable methyltransferase PMT27 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2160806;,locus:2013628;,locus:2040864;,locus:2080823; AT5G64030,AT1G29470,AT2G34300,AT3G51070 methyltransferase Os01g0883900 protein (cDNA clone:002-130-F03, full insert sequence) (cDNA clone:J023115H24, full insert sequence),Ankyrin-like (Os06g0712800 protein),Os05g0395116 protein Q0JH49,Q5Z5X8,A0A0P0WM31 Q0JH49_ORYSJ,Q5Z5X8_ORYSJ,A0A0P0WM31_ORYSJ Os01g0883900 Os01g0883900 OSNPB_010883900,Os06g0712800 OJ1663_H12.35 OSNPB_060712800 P0712G01.10,Os05g0395116 OSNPB_050395116 ENOG411DQT7 GUS3 Q9FF10,Q9FZP1,Q8L608,A0A1P8BAZ2,F4JWV6,F4JWV5 HPSE1_ARATH,HPSE3_ARATH,HPSE2_ARATH,A0A1P8BAZ2_ARATH,F4JWV6_ARATH,F4JWV5_ARATH Heparanase-like protein 1 (EC 3.2.-.-),Heparanase-like protein 3 (EC 3.2.-.-),Heparanase-like protein 2 (EC 3.2.-.-),Glucuronidase 3 FUNCTION: Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme. Cleaves heparan sulfate proteoglycans (HSPGs) into heparan sulfate side chains and core proteoglycans (By similarity). {ECO:0000250}. ARA:AT5G07830-MONOMER;,ARA:AT5G34940-MONOMER;,ARA:GQT-1177-MONOMER; R-ATH-6798695; 3.2.-.- 60250,59709,59865,33388,42594,44736 Heparanase-like protein 1 (EC 3.2.-.-),Heparanase-like protein 3 (EC 3.2.-.-),Heparanase-like protein 2 (EC 3.2.-.-),Glucuronidase 3 cell wall [GO:0005618]; extracellular region [GO:0005576]; lysosomal membrane [GO:0005765]; plant-type cell wall [GO:0009505]; beta-glucuronidase activity [GO:0004566]; unidimensional cell growth [GO:0009826],extracellular region [GO:0005576]; lysosomal membrane [GO:0005765]; plant-type cell wall [GO:0009505]; beta-glucuronidase activity [GO:0004566],membrane [GO:0016020]; hydrolase activity, acting on glycosyl bonds [GO:0016798] locus:2142768;,locus:2183542;,locus:2163243; AT5G07830,AT5G34940,AT5G61250 heparanase-like protein Os06g0179000 protein (Putative beta-glucuronidase) (cDNA clone:J013002K06, full insert sequence),Heparanase-like protein 2, putative, expressed (Os03g0211700 protein),Heparanase-like protein 2, putative, expressed (Os12g0578400 protein) (cDNA clone:J013001J13, full insert sequence),Os02g0802200 protein (Putative beta-glucuronidase) (cDNA clone:002-129-H06, full insert sequence),Os03g0211700 protein (Fragment) Q5SNA6,Q10Q31,Q2QN56,Q69II6,A0A0P0VUM4 Q5SNA6_ORYSJ,Q10Q31_ORYSJ,Q2QN56_ORYSJ,Q69II6_ORYSJ,A0A0P0VUM4_ORYSJ Os06g0179000 Os06g0179000 OSJNBa0035I03.13 OSNPB_060179000,Os03g0211700 LOC_Os03g11320 Os03g0211700 OSNPB_030211700,LOC_Os12g38920 Os12g0578400 OSNPB_120578400,Os02g0802200 OsJ_08752 OSJNBa0032L17.36 OSNPB_020802200 P0689B12.13,Os03g0211700 OSNPB_030211700 ENOG411DQT6 GSDA Q94BU8,A0A1P8BAA4,F4K5T6 Q94BU8_ARATH,A0A1P8BAA4_ARATH,F4K5T6_ARATH AT5g28050/F15F15_120 (Cytidine/deoxycytidylate deaminase family protein),Cytidine/deoxycytidylate deaminase family protein FUNCTION: Catalyzes the hydrolytic deamination of guanosine, producing xanthosine and ammonia. Deaminates exclusively guanosine and 2'-deoxyguanosine but no other aminated purines, pyrimidines, or pterines. Deamination of guanosine by GSDA is the only source of xanthosine production in Arabidopsis. {ECO:0000269|PubMed:24130159}. 20002,31765,22232 AT5g28050/F15F15_120 (Cytidine/deoxycytidylate deaminase family protein),Cytidine/deoxycytidylate deaminase family protein hydrolase activity [GO:0016787]; zinc ion binding [GO:0008270],cytosol [GO:0005829]; guanosine deaminase activity [GO:0047974]; zinc ion binding [GO:0008270]; purine nucleoside catabolic process [GO:0006152]; RNA modification [GO:0009451] locus:2143774; AT5G28050 cytidine deoxycytidylate deaminase family protein Guanine deaminase, putative, expressed (Os03g0833900 protein) (Putative deoxycytidine deaminase) (cDNA clone:J033047O14, full insert sequence),Os07g0245100 protein (Fragment),Os03g0833900 protein Q75LI1,Q0D7H8,A0A0P0X4E0,A0A0P0W5A5 Q75LI1_ORYSJ,Q0D7H8_ORYSJ,A0A0P0X4E0_ORYSJ,A0A0P0W5A5_ORYSJ LOC_Os03g61810 Os03g0833900 OsJ_13255 OSJNBa0096I06.26 OSNPB_030833900,Os07g0245100 Os07g0245100 OSNPB_070245100,Os07g0245100 OSNPB_070245100,Os03g0833900 OSNPB_030833900 ENOG411DQT1 PCMP-E91 Q9LUS3 PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610 72846 Pentatricopeptide repeat-containing protein At3g16610 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2089333; AT3G16610 Pentatricopeptide repeat-containing protein Os01g0977400 protein (Fragment) A0A0P0VDP7 A0A0P0VDP7_ORYSJ Os01g0977400 OSNPB_010977400 ENOG411DQT0 P2A12,PP2A11,PP2A13,PP2A14,PP2-A12,PP2-A13 Q9LN77,Q9CAN4,Q9LEX0,Q9FJ80,A0A1P8ATV4,F4JD33 P2A12_ARATH,P2A11_ARATH,P2A13_ARATH,P2A14_ARATH,A0A1P8ATV4_ARATH,F4JD33_ARATH F-box protein PP2-A12 (Protein PHLOEM PROTEIN 2-LIKE A12) (AtPP2-A12),F-box protein PP2-A11 (Protein PHLOEM PROTEIN 2-LIKE A11) (AtPP2-A11) (SKP1-interacting partner 10),F-box protein PP2-A13 (Protein PHLOEM PROTEIN 2-LIKE A13) (AtPP2-A13) (SKP1-interacting partner 9),F-box protein PP2-A14 (Protein PHLOEM PROTEIN 2-LIKE A14) (AtPP2-A14) (SKP1-interacting partner 13),Phloem protein 2-A12,Phloem protein 2-A13 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 33266,32555,33115,33631,38003,33243 F-box protein PP2-A12 (Protein PHLOEM PROTEIN 2-LIKE A12) (AtPP2-A12),F-box protein PP2-A11 (Protein PHLOEM PROTEIN 2-LIKE A11) (AtPP2-A11) (SKP1-interacting partner 10),F-box protein PP2-A13 (Protein PHLOEM PROTEIN 2-LIKE A13) (AtPP2-A13) (SKP1-interacting partner 9),F-box protein PP2-A14 (Protein PHLOEM PROTEIN 2-LIKE A14) (AtPP2-A14) (SKP1-interacting partner 13),Phloem protein 2-A12,Phloem protein 2-A13 carbohydrate binding [GO:0030246],nucleus [GO:0005634]; carbohydrate binding [GO:0030246]; protein ubiquitination [GO:0016567],nucleus [GO:0005634]; protein ubiquitination [GO:0016567],carbohydrate binding [GO:0030246]; response to wounding [GO:0009611] locus:2195042;,locus:2015238;,locus:2173078;,locus:2100997; AT1G12710,AT1G63090,AT3G61060,AT5G52120 F-Box protein Os09g0525300 protein,Os02g0224900 protein (Fragment),F-box family protein, putative, expressed (Os10g0522400 protein) (cDNA clone:J023120I24, full insert sequence),F-box family protein, putative, expressed (Os03g0116700 protein) (cDNA clone:002-100-H04, full insert sequence) Q0J083,Q0E2N7,Q109D8,Q10SN2 Q0J083_ORYSJ,Q0E2N7_ORYSJ,Q109D8_ORYSJ,Q10SN2_ORYSJ Os09g0525300 OSNPB_090525300,Os02g0224900 Os02g0224900 OSNPB_020224900,Os10g0522400 LOC_Os10g37830 Os10g0522400 OSNPB_100522400,LOC_Os03g02550 Os03g0116700 OSNPB_030116700 ENOG411DQT3 RH51 Q9LIH9 RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 (EC 3.6.4.13) 3.6.4.13 63816 DEAD-box ATP-dependent RNA helicase 51 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2086909; AT3G18600 ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 27 (EC 3.6.4.13),Putative DEAD-box ATP-dependent RNA helicase 51 (EC 3.6.4.13),RNA helicase (EC 3.6.4.13) Q84T03,Q0DBS1,A0A0P0WXH1 RH27_ORYSJ,RH51_ORYSJ,A0A0P0WXH1_ORYSJ Os03g0802700 LOC_Os03g58810 OsJ_12997 OSJNBa0087C10.12,Os06g0535100 LOC_Os06g34420 OsJ_21574 OSJNBa0001B21.18,Os06g0535100 OSNPB_060535100 ENOG411DQT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase Os11g0591200 protein (Fragment) Q0IRW8 Q0IRW8_ORYSJ Os11g0591200 OSNPB_110591200 ENOG411EB6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EB6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutamate dehydrogenase NA NA NA NA NA NA NA ENOG411EB6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BCCT family transporter NA NA NA NA NA NA NA ENOG411E9TJ CHX8 Q58P71 CHX8_ARATH Cation/H(+) antiporter 8 (Protein CATION/H+ EXCHANGER 8) (AtCHX8) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 90956 Cation/H(+) antiporter 8 (Protein CATION/H+ EXCHANGER 8) (AtCHX8) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:15347787}. AT2G28180 Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411E9TK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E9TH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9TI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor TFIID complex subunit 8 C-term Os03g0603300 protein (Fragment) Q0DQE7 Q0DQE7_ORYSJ Os03g0603300 Os03g0603300 OSNPB_030603300 ENOG411E9TN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9TM Q9LJB9,Q9LU43,O82622,Q9LJC0 FB171_ARATH,FB172_ARATH,FB227_ARATH,FB170_ARATH Putative F-box protein At3g21130,Putative F-box protein At3g21170,Putative F-box protein At4g10190,Putative F-box protein At3g21120 42119,45432,42673,42116 Putative F-box protein At3g21130,Putative F-box protein At3g21170,Putative F-box protein At4g10190,Putative F-box protein At3g21120 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2092995;,locus:2124665;,locus:2092985; AT3G21130,AT3G21170,AT4G10190,AT3G21120 CONTAINS InterPro DOMAIN s Cyclin-like F-box (InterPro IPR001810) F-box associated (InterPro IPR006527) F-box associated type 1 (InterPro IPR017451) NA NA NA NA NA NA NA ENOG411E9TB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9TC AHP3,AHP2 Q9SAZ5,Q9ZNV8,A0A1P8BBL2,A0A1P8BBL0,F4JGC7 AHP3_ARATH,AHP2_ARATH,A0A1P8BBL2_ARATH,A0A1P8BBL0_ARATH,F4JGC7_ARATH Histidine-containing phosphotransfer protein 3,Histidine-containing phosphotransfer protein 2,Histidine-containing phosphotransmitter 3,Two-component phosphorelay mediator FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay. {ECO:0000269|PubMed:10050311, ECO:0000269|PubMed:12068096, ECO:0000269|PubMed:14981318, ECO:0000269|PubMed:9804162}. 17479,17476,23364,21336,18831 Histidine-containing phosphotransfer protein 3,Histidine-containing phosphotransfer protein 2,Histidine-containing phosphotransmitter 3,Two-component phosphorelay mediator cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; histidine phosphotransfer kinase activity [GO:0009927]; protein histidine kinase binding [GO:0043424]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160],intracellular [GO:0005622]; signal transducer activity [GO:0004871]; phosphorelay signal transduction system [GO:0000160],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; signal transducer activity [GO:0004871]; phosphorelay signal transduction system [GO:0000160],cytoplasm [GO:0005737]; nucleus [GO:0005634]; histidine phosphotransfer kinase activity [GO:0009927]; protein histidine kinase binding [GO:0043424]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; phosphorylation [GO:0016310] TISSUE SPECIFICITY: Strongly expressed in roots. Detected also in flowers, leaves, siliques and stems. {ECO:0000269|PubMed:14981318, ECO:0000269|PubMed:9804162}.,TISSUE SPECIFICITY: Strongly expressed in flowers and roots. Detected also in leaves, siliques and stems. {ECO:0000269|PubMed:14981318, ECO:0000269|PubMed:9804162}. locus:2175643;,locus:2093817;,locus:504955364; AT5G39340,AT3G29350,AT4G04402 histidine-containing phosphotransmitter 2 NA NA NA NA NA NA NA ENOG411E9TA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NBS-LRR protein Os07g0117400 protein,Os07g0118000 protein,Os07g0117000 protein (cDNA clone:J023020C21, full insert sequence),Os07g0117200 protein,Os07g0117350 protein,Os07g0117800 protein,Os07g0116900 protein,Os01g0355700 protein (Fragment),Os07g0117600 protein Q8H5J8,B9FV91,Q7F1U5,Q8H5K1,A0A0N7KMU8,A0A0P0X214,A0A0P0X1N7,A0A0P0V2F5,A0A0P0X1T2 Q8H5J8_ORYSJ,B9FV91_ORYSJ,Q7F1U5_ORYSJ,Q8H5K1_ORYSJ,A0A0N7KMU8_ORYSJ,A0A0P0X214_ORYSJ,A0A0P0X1N7_ORYSJ,A0A0P0V2F5_ORYSJ,A0A0P0X1T2_ORYSJ OJ1119_A04.117 Os07g0117400 OsJ_22891 OSNPB_070117400,Os07g0118000 OsJ_22894 OSNPB_070118000,OJ1119_A04.111 Os07g0117000 OSNPB_070117000,OJ1119_A04.113 Os07g0117200 OsJ_22888 OSNPB_070117200,Os07g0117350 OSNPB_070117350,Os07g0117800 OSNPB_070117800,Os07g0116900 OSNPB_070116900,Os01g0355700 OSNPB_010355700,Os07g0117600 OSNPB_070117600 ENOG411E9TF ATL32 Q8W571 ATL32_ARATH RING-H2 finger protein ATL32 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL32) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 36070 RING-H2 finger protein ATL32 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL32) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2140069; AT4G40070 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E9TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipopolysaccharide kinase (Kdo/WaaP) family NA NA NA NA NA NA NA ENOG411E9TD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411E9TE C0LGU1,A0A1R7T3G3,A0A1R7T3G2 Y5374_ARATH,A0A1R7T3G3_ARATH,A0A1R7T3G2_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g37450 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 106058,108890,83563 Probable LRR receptor-like serine/threonine-protein kinase At5g37450 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] AT5G37450 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411E9TZ GSTU23 Q9M9F1,A0A1P8AUX6 GSTUN_ARATH,A0A1P8AUX6_ARATH Glutathione S-transferase U23 (AtGSTU23) (EC 2.5.1.18) (GST class-tau member 23),Glutathione S-transferase TAU 23 FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G78320-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25681,22629 Glutathione S-transferase U23 (AtGSTU23) (EC 2.5.1.18) (GST class-tau member 23),Glutathione S-transferase TAU 23 cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],transferase activity [GO:0016740] locus:2032035; AT1G78320 glutathione S-transferase TAU 23 NA NA NA NA NA NA NA ENOG411E9TX RTNLB14 A2RVT6 RTNLN_ARATH Reticulon-like protein B14 (AtRTNLB14) 25259 Reticulon-like protein B14 (AtRTNLB14) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2199322; AT1G68230 Reticulon NA NA NA NA NA NA NA ENOG411E9TY EXL2,EXL4 Q9FE06,Q9FY71 EXOL2_ARATH,EXOL4_ARATH Protein EXORDIUM-like 2,Protein EXORDIUM-like 4 FUNCTION: May play a role in a brassinosteroid-dependent regulation of growth and development. {ECO:0000250}. 32674,29474 Protein EXORDIUM-like 2,Protein EXORDIUM-like 4 apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506],apoplast [GO:0048046]; extracellular space [GO:0005615]; membrane [GO:0016020]; plasmodesma [GO:0009506]; defense response to fungus [GO:0050832] locus:2173428;,locus:2184792; AT5G64260,AT5G09440 Phosphate-induced protein 1 conserved region NA NA NA NA NA NA NA ENOG411E9TR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9TS F4P12_30 Q9LFI4,Q9M135,F4J1Q8 Q9LFI4_ARATH,Q9M135_ARATH,F4J1Q8_ARATH Plastocyanin-like domain-containing protein (Uncharacterized protein F4P12_30),Plastocyanin-like domain-containing protein (Putative copper-containing glycoprotein),Cupredoxin superfamily protein 34906,23834,19449 Plastocyanin-like domain-containing protein (Uncharacterized protein F4P12_30),Plastocyanin-like domain-containing protein (Putative copper-containing glycoprotein),Cupredoxin superfamily protein anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2083931;,locus:2124958;,locus:504955772; AT3G53330,AT4G01380,AT3G28958 copper ion binding electron carrier NA NA NA NA NA NA NA ENOG411E9TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411E9TQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Red chlorophyll catabolite reductase (RCC reductase) Os10g0389300 protein (Fragment) A0A0P0XTS2 A0A0P0XTS2_ORYSJ Os10g0389300 OSNPB_100389300 ENOG411E9TV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411E9TW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transfer protein NA NA NA NA NA NA NA ENOG411E9TT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411E9TU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411E9T8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferases group 1 NA NA NA NA NA NA NA ENOG411E9T9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase NA NA NA NA NA NA NA ENOG411E9T2 BCAT4 Q9LE06 BCAT4_ARATH Methionine aminotransferase BCAT4 (EC 2.6.1.88) (Branched-chain-amino-acid aminotransferase 4) (Atbcat-4) (Methionine-oxo-acid transaminase BCAT4) DISRUPTION PHENOTYPE: Reduced methionine-derived aliphatic glucosinolate accumulation, but increased levels of free methionine and S-methylmethionine. {ECO:0000269|PubMed:17056707}. The methionine-derived glucosinolate content was reduced to 53% in the leaves. Meanwhile the level of free methionine was increased for about five-fold. Extremely high level of S-methylmethione the main transport form of methionine was found in the seeds. Elevated free methionine levels in leaves; Low levels of methionine-derived glucosinolates-S. Binder-2006 FUNCTION: Converts 2-oxo acids to branched-chain amino acids. Shows activity with L-Leu, L-Ile and L-Val as amino donors and alpha-keto-glutarate as an amino acceptor, but no activity for D-isomers of Leu, Ile, Val, Asp, Glu or Ala. Acts on methionine and its derivatives and the corresponding 2-oxo acids. Catalyzes the initial deamination of methionine to 4-methylthio-2-oxobutyrate as well as the transamination of other typical intermediates of the methionine chain elongation pathway. {ECO:0000269|PubMed:17056707, ECO:0000269|PubMed:18318836}. MISCELLANEOUS: Although all the other members of the family possess a branched-chain amino acid aminotransferase activity, the exact function of BCAT4 remains unclear at present. ARA:AT3G19710-MONOMER;MetaCyc:AT3G19710-MONOMER; R-ATH-70895; 2.6.1.88; 2.6.1.88 39019 Methionine aminotransferase BCAT4 (EC 2.6.1.88) (Branched-chain-amino-acid aminotransferase 4) (Atbcat-4) (Methionine-oxo-acid transaminase BCAT4) cytosol [GO:0005829]; branched-chain-amino-acid transaminase activity [GO:0004084]; methionine-oxo-acid transaminase activity [GO:0010326]; branched-chain amino acid metabolic process [GO:0009081]; glucosinolate biosynthetic process [GO:0019761]; response to light stimulus [GO:0009416]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Mostly expressed in phloem. {ECO:0000269|PubMed:17056707}. locus:2091216; AT3G19710 branched-chain aminotransferase4 NA NA NA NA NA NA NA ENOG411E9T3 TOPP2,TOPP5 P48482,P48485 PP12_ARATH,PP15_ARATH Serine/threonine-protein phosphatase PP1 isozyme 2 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP1 isozyme 5 (EC 3.1.3.16) FUNCTION: Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro. {ECO:0000269|PubMed:21222654}. 3.1.3.16 35532,35519 Serine/threonine-protein phosphatase PP1 isozyme 2 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP1 isozyme 5 (EC 3.1.3.16) protein phosphatase type 1 complex [GO:0000164]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; protein dephosphorylation [GO:0006470],protein phosphatase type 1 complex [GO:0000164]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2168484;,locus:2102762; AT5G59160,AT3G46820 serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411E9T0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Os01g0687400 protein (Putative chitinase) (cDNA clone:001-208-C10, full insert sequence) Q8RU26 Q8RU26_ORYSJ Os01g0687400 Os01g0687400 OSNPB_010687400 P0519D04.21 ENOG411E9T1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9T6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9T7 PER49 O23237 PER49_ARATH Peroxidase 49 (Atperox P49) (EC 1.11.1.7) (ATP31) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G36430-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 36164 Peroxidase 49 (Atperox P49) (EC 1.11.1.7) (ATP31) cell wall [GO:0005618]; extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2115335; AT4G36430 Peroxidase NA NA NA NA NA NA NA ENOG411E9T4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase C65 Otubain NA NA NA NA NA NA NA ENOG411E9T5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB62 MZF18.15 Q9FLW4 Q9FLW4_ARATH Acetyl-CoA:benzylalcohol acetyltranferase-like protein (At5g23970) (HXXXD-type acyl-transferase family protein) ARA:AT5G23970-MONOMER; 47789 Acetyl-CoA:benzylalcohol acetyltranferase-like protein (At5g23970) (HXXXD-type acyl-transferase family protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2178667; AT5G23970 Transferase family NA NA NA NA NA NA NA ENOG411EFE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Os07g0611700 protein,Os07g0612200 protein,Os05g0485600 protein,Os05g0493050 protein Q7XB87,A0A0P0X8R8,A0A0P0WNU3,A0A0P0WP30 Q7XB87_ORYSJ,A0A0P0X8R8_ORYSJ,A0A0P0WNU3_ORYSJ,A0A0P0WP30_ORYSJ OJ1003_H02.116 Os07g0611700 OSNPB_070611700,Os07g0612200 OSNPB_070612200,Os05g0485600 OSNPB_050485600,Os05g0493050 OSNPB_050493050 ENOG411EFE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0443700 protein,Os08g0443600 protein,Os08g0443400 protein Q6Z8Q9,A3BTL0,A0A0P0XGB0 Q6Z8Q9_ORYSJ,A3BTL0_ORYSJ,A0A0P0XGB0_ORYSJ Os08g0443700 OsJ_27494 OSNPB_080443700 P0708B04.20,Os08g0443600 OsJ_27493 OSNPB_080443600,Os08g0443400 OSNPB_080443400 ENOG411EFE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EFE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Yippee Putative yippee-like protein Os10g0369500,Os10g0369500 protein Q8S5M8,A0A0P0XTB4 YIPL_ORYSJ,A0A0P0XTB4_ORYSJ Os10g0369500 LOC_Os10g22410 OJ1003C07.11,Os10g0369500 OSNPB_100369500 ENOG411EFE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HCaRG protein NA NA NA NA NA NA NA ENOG411EFE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0182601 protein (Fragment),Os07g0189400 protein (Fragment) A0A0P0X362,A0A0P0X3D6 A0A0P0X362_ORYSJ,A0A0P0X3D6_ORYSJ Os07g0182601 OSNPB_070182601,Os07g0189400 OSNPB_070189400 ENOG411EFE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0701300 protein,Os01g0700900 protein B9EZ10,A0A0P0V708 B9EZ10_ORYSJ,A0A0P0V708_ORYSJ Os01g0701300 OsJ_03153 OSNPB_010701300,Os01g0700900 OSNPB_010700900 ENOG411EB60 MBB18.13,MBB18.14 Q3E8L3,Q9FFW2,Q9FFW3,A0A1P8BCR3,A0A1P8BCN4 FBD36_ARATH,FBD17_ARATH,Q9FFW3_ARATH,A0A1P8BCR3_ARATH,A0A1P8BCN4_ARATH Probable FBD-associated F-box protein At5g38565,FBD-associated F-box protein At5g38590,FBD-like domain family protein,F-box/RNI-like/FBD-like domains-containing protein 40076,47113,19287,28880,32217 Probable FBD-associated F-box protein At5g38565,FBD-associated F-box protein At5g38590,FBD-like domain family protein,F-box/RNI-like/FBD-like domains-containing protein locus:504954959;,locus:2159803;,locus:2159908; AT5G38565,AT5G38590,AT5G38580 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EFEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EFEX AtXYP3 Q2PE70 Q2PE70_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Xylogen like protein 3) 20852 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Xylogen like protein 3) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2138586; AT4G08670 Protease inhibitor seed storage lipid transfer protein (LTP) family protein NA NA NA NA NA NA NA ENOG411EFEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411EFEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0148500 protein (Os08g0148566 protein),Os05g0158099 protein C7J5T2,A0A0P0WI57 C7J5T2_ORYSJ,A0A0P0WI57_ORYSJ Os08g0148566 Os08g0148500 OSNPB_080148566,Os05g0158099 OSNPB_050158099 ENOG411EFEW AtTIK Q9FLA7,F4JU08,F4JU10,F4KBQ6 Q9FLA7_ARATH,F4JU08_ARATH,F4JU10_ARATH,F4KBQ6_ARATH Similarity to disease resistance protein (Toll-Interleukin-Resistance (TIR) domain family protein),Toll-Interleukin-Resistance (TIR) domain family protein 27519,27795,28798,28145 Similarity to disease resistance protein (Toll-Interleukin-Resistance (TIR) domain family protein),Toll-Interleukin-Resistance (TIR) domain family protein integral component of membrane [GO:0016021]; signal transduction [GO:0007165] locus:2155372;,locus:1006230307;,locus:1006230308; AT5G44910,AT4G19910,AT4G19925,AT5G44920 domain-containing protein NA NA NA NA NA NA NA ENOG411EFET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Expressed protein (Os03g0185400 protein),Os02g0136800 protein (cDNA clone:J023058D10, full insert sequence) (cDNA clone:J033130L10, full insert sequence),Os02g0107600 protein (cDNA clone:J013124E14, full insert sequence) (cDNA clone:J033084P16, full insert sequence),Os02g0141400 protein (cDNA clone:002-102-D01, full insert sequence),Os02g0108400 protein,Os10g0374300 protein,Os02g0144200 protein,Os02g0140900 protein,Os02g0142800 protein (cDNA clone:J013135F21, full insert sequence),Os02g0144800 protein,Os02g0146900 protein (cDNA clone:J033048L23, full insert sequence),Os02g0147600 protein (cDNA clone:J023078J22, full insert sequence),Os02g0146800 protein,Os02g0108900 protein,Os08g0165000 protein,Os01g0223300 protein (Fragment),Os08g0165200 protein,Os02g0143500 protein Q10QS3,Q6Z0Y0,Q6ETT9,Q6YX78,Q6ETT3,B9G5F5,Q6YXV7,Q6Z2W9,Q6YWG9,Q6YXV4,Q6Z2Z1,Q6Z2Y4,Q6Z2Z2,Q6ETT0,A0A0P0XCA3,A0A0P0V095,A0A0N7KPB8,A0A0P0VEN7 Q10QS3_ORYSJ,Q6Z0Y0_ORYSJ,Q6ETT9_ORYSJ,Q6YX78_ORYSJ,Q6ETT3_ORYSJ,B9G5F5_ORYSJ,Q6YXV7_ORYSJ,Q6Z2W9_ORYSJ,Q6YWG9_ORYSJ,Q6YXV4_ORYSJ,Q6Z2Z1_ORYSJ,Q6Z2Y4_ORYSJ,Q6Z2Z2_ORYSJ,Q6ETT0_ORYSJ,A0A0P0XCA3_ORYSJ,A0A0P0V095_ORYSJ,A0A0N7KPB8_ORYSJ,A0A0P0VEN7_ORYSJ LOC_Os03g08690 Os03g0185400 OSNPB_030185400,Os02g0136800 OSJNBa0081C13.24-1 OSNPB_020136800,P0017C12.10-1 Os02g0107600 OsJ_05039 OSNPB_020107600,Os02g0141400 Os02g0141400 OJ1123_E07.3 OSNPB_020141400,Os02g0108400 OsJ_05047 OSNPB_020108400 P0017C12.22,Os10g0374300 OsJ_31293 OSNPB_100374300,Os02g0144200 OSJNBa0064G16.16 OSNPB_020144200,Os02g0140900 OJ1679_B08.23 OsJ_05329 OSNPB_020140900,Os02g0142800 OsJ_05344 OSJNBb0018G11.27 OSNPB_020142800,Os02g0144800 OsJ_05354 OSJNBa0064G16.28 OSNPB_020144800,OJ1008_C03.13-1 Os02g0146900 OSNPB_020146900,OJ1008_C03.25-1 P0479D12.4-1 Os02g0147600 OSNPB_020147600,Os02g0146800 OJ1008_C03.12 OsJ_05369 OSNPB_020146800,Os02g0108900 OSNPB_020108900 P0017C12.26,Os08g0165000 OSNPB_080165000,Os01g0223300 OSNPB_010223300,Os08g0165200 OSNPB_080165200,Os02g0143500 OSNPB_020143500 ENOG411EFEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0248900 protein Q6K509 Q6K509_ORYSJ OSJNBa0011N12.21 Os02g0248900 OSNPB_020248900 ENOG411EFER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411EFES SAUR16 Q9T0J3 Q9T0J3_ARATH At4g38860 (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family) 12002 At4g38860 (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2141786; AT4G38860 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic porin NA NA NA NA NA NA NA ENOG411EFEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os05g0569100 protein B9FI73 B9FI73_ORYSJ Os05g0569100 OsJ_19594 OSNPB_050569100 ENOG411EFEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EFEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0975300 protein (Putative Myb factor protein) (cDNA clone:001-040-C01, full insert sequence) (cDNA clone:J013058H19, full insert sequence),Os01g0975300 protein Q5JL15,A0A0P0VDS4 Q5JL15_ORYSJ,A0A0P0VDS4_ORYSJ Os01g0975300 OSNPB_010975300 P0459B04.21,Os01g0975300 OSNPB_010975300 ENOG411EFEK F18B3.80 Q9FJY2,Q9SVL8 Q9FJY2_ARATH,Q9SVL8_ARATH Uncharacterized protein At5g66580,Uncharacterized protein At3g50800 (Uncharacterized protein F18B3.80) 16632,16278 Uncharacterized protein At5g66580,Uncharacterized protein At3g50800 (Uncharacterized protein F18B3.80) locus:2154955;,locus:2077952; AT5G66580,AT3G50800 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EFEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family NA NA NA NA NA NA NA ENOG411EFEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os09g0547800 protein (cDNA clone:J033003A15, full insert sequence),Os09g0548066 protein,Os09g0548034 protein Q0IZV0,A0A0P0XPX8,A0A0P0XQW6 Q0IZV0_ORYSJ,A0A0P0XPX8_ORYSJ,A0A0P0XQW6_ORYSJ Os09g0547800 Os09g0547800 OSNPB_090547800,Os09g0548066 OSNPB_090548066,Os09g0548034 OSNPB_090548034 ENOG411EFEG SAUR12 Q9SIG9 Q9SIG9_ARATH Putative auxin-regulated protein (SAUR-like auxin-responsive protein family) 11793 Putative auxin-regulated protein (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2047117; AT2G21220 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nucleoporin 88kDa NA NA NA NA NA NA NA ENOG411EFEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFEA Q1G395,Q2V3P0,A8MR68,B3H7I0,B3H595,B3H6P2 Q1G395_ARATH,Q2V3P0_ARATH,A8MR68_ARATH,B3H7I0_ARATH,B3H595_ARATH,B3H6P2_ARATH Plant self-incompatibility protein S1 family,At3g55677 (Plant self-incompatibility protein S1 family) 19175,19644,19707,16156,19420,19542 Plant self-incompatibility protein S1 family,At3g55677 (Plant self-incompatibility protein S1 family) integral component of membrane [GO:0016021] locus:4010713833;,locus:1009023269;,locus:4010713836;,locus:4515103266;,locus:4515103271;,locus:4515103267; AT3G55252,AT3G55677,AT3G55665,AT3G54925,AT3G55672,AT3G55254 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EB69 RH25 Q94C75 RH25_ARATH DEAD-box ATP-dependent RNA helicase 25 (EC 3.6.4.13) 3.6.4.13 62495 DEAD-box ATP-dependent RNA helicase 25 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; RNA secondary structure unwinding [GO:0010501] locus:2159527; AT5G08620 Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411EB68 NPF2.9 Q9M9V7 PTR8_ARATH Protein NRT1/ PTR FAMILY 2.9 (AtNPF2.9) (Nitrate transporter 1.9) DISRUPTION PHENOTYPE: Decreased nitrate content in root phloem exudates. Enhanced root-to shoot nitrate transport and plant growth under high nitrate conditions. {ECO:0000269|PubMed:21571952}. FUNCTION: Low-affinity nitrate transporter facilitating nitrate loading into root phloem. Not involved in dipeptides transport, but has a weak glucosinolate transport activity. {ECO:0000269|PubMed:21571952, ECO:0000269|PubMed:22864417}. R-ATH-427975;R-ATH-6798695; 65174 Protein NRT1/ PTR FAMILY 2.9 (AtNPF2.9) (Nitrate transporter 1.9) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; phloem nitrate loading [GO:0090408]; phloem transport [GO:0010233] TISSUE SPECIFICITY: Expressed in roots, stems and major veins of the leaves. Detected in the companion cells of the root phloem. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:21571952}. locus:2035005; AT1G18880 POT family NA NA NA NA NA NA NA ENOG411DV6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA respiratory burst Respiratory burst oxidase homolog protein B (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHB) (OsrbohB) Q5ZAJ0 RBOHB_ORYSJ RBOHB Os01g0360200 LOC_Os01g25820 B1164G11.26 OsJ_01746 FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide. {ECO:0000250}. ENOG411DV6I THIC O82392,A0A1P8B279 THIC_ARATH,A0A1P8B279_ARATH Phosphomethylpyrimidine synthase, chloroplastic (EC 4.1.99.17) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Protein PYRIMIDINE REQUIRING) (Thiamine biosynthesis protein ThiC) (Protein THIAMINE C),ThiaminC DISRUPTION PHENOTYPE: Albino (white leaves) and lethal under normal culture conditions, probably due to an impairment in thiamine biosynthesis. {ECO:0000269|PubMed:18048325, ECO:0000269|PubMed:18332905}. A severe reduction (~10-fold) of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. For example alanine asparagine methionine phenylalanine tryptophan and malate levels rise while fumarate gentiobiose and ribose levels decrease. thiC mutants are chlorotic and arrest in their development at the cotyledon stage.The mutant phenotype can be largely rescued by continuous supplementation with thiamin.,thic1 mutants produce white leaves and die early unless they are grown with thiamine supplements. Total thiamine levels are reduced by roughly 60% in the thic1 mutant. Seedling lethal; Albino-H. Ling-2008 FUNCTION: Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. {ECO:0000269|PubMed:18048325, ECO:0000269|PubMed:18332905}. PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis. ARA:GQT-320-MONOMER;MetaCyc:AT2G29630-MONOMER; 4.1.99.17; 4.1.99.17 71987,53501 Phosphomethylpyrimidine synthase, chloroplastic (EC 4.1.99.17) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Protein PYRIMIDINE REQUIRING) (Thiamine biosynthesis protein ThiC) (Protein THIAMINE C),ThiaminC chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ADP-ribose pyrophosphohydrolase activity [GO:0080041]; iron-sulfur cluster binding [GO:0051536]; lyase activity [GO:0016829]; metal ion binding [GO:0046872]; protein domain specific binding [GO:0019904]; response to vitamin B1 [GO:0010266]; thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229],iron-sulfur cluster binding [GO:0051536]; thiamine biosynthetic process [GO:0009228] DEVELOPMENTAL STAGE: First detected in five-days seedlings. In seedlings, mostly present at the root tips and in the jointed section between the hypocotyl and root. In two-leaves seedlings, expressed in leaves, cotyledons and vascular bundles of hypocotyls, and very weakly, in the roots. In flowers, detected in sepals, filaments and pistil tips, but not in petals. Later accumulates in the jointed region between the silique and silique stem, and in the tips of siliques. Decreasing expression during seed development (PubMed:25014715). {ECO:0000269|PubMed:18048325, ECO:0000269|PubMed:18332905, ECO:0000269|PubMed:25014715}. TISSUE SPECIFICITY: Strongly expressed in cotyledons, leaves, flowers and siliques, and, to a lower extent, in roots (PubMed:18048325, PubMed:25014715). Expressed in all green tissues, but not in roots, seeds, and petals (PubMed:23341335). {ECO:0000269|PubMed:18048325, ECO:0000269|PubMed:23341335, ECO:0000269|PubMed:25014715}. locus:2060604; AT2G29630 Thiamine biosynthesis protein ThiC Os03g0679700 protein (Thiamine biosynthesis protein thiC, putative, expressed) (cDNA clone:J013044A21, full insert sequence) (cDNA clone:J013159A12, full insert sequence),Os03g0679700 protein (Fragment) Q10F62,A0A0P0W1G5 Q10F62_ORYSJ,A0A0P0W1G5_ORYSJ Os03g0679700 LOC_Os03g47610 Os03g0679700 OSNPB_030679700,Os03g0679700 OSNPB_030679700 ENOG411DV6J LIG4,ATLIG4 Q9LL84,A0A1P8BHE2 DNLI4_ARATH,A0A1P8BHE2_ARATH DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4),DNA ligase IV Delayed growth during later stages of development.,Plants are hypersensitive to methyl methanesulfonate and X-rays. They are not impaired in T-DNA integration. Do not display any growth developmental or fertility defects.,Delayed seed germination- even greater than in atlig6-1 alone. Seedling growth sensitive to genotoxic stress-P. Hooykaas-2003 FUNCTION: Efficiently joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair. May be involved for T-DNA integration even if not absolutely required. Seems to be dispensable under normal growth conditions. {ECO:0000269|PubMed:12753583, ECO:0000269|PubMed:12853643}. 6.5.1.1 137851,100020 DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4),DNA ligase IV apoplast [GO:0048046]; cytoplasm [GO:0005737]; DNA ligase IV complex [GO:0032807]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA ligase (ATP) activity [GO:0003910]; metal ion binding [GO:0046872]; cellular response to DNA damage stimulus [GO:0006974]; DNA biosynthetic process [GO:0071897]; DNA ligation involved in DNA repair [GO:0051103]; DNA recombination [GO:0006310]; DNA replication [GO:0006260]; double-strand break repair [GO:0006302]; double-strand break repair via nonhomologous end joining [GO:0006303]; nucleotide-excision repair, DNA gap filling [GO:0006297]; response to X-ray [GO:0010165],ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA ligase (ATP) activity [GO:0003910]; DNA ligation involved in DNA repair [GO:0051103]; DNA recombination [GO:0006310] TISSUE SPECIFICITY: Widely expressed, with higher levels in young flowers and roots. {ECO:0000269|PubMed:11029705}. locus:2175544; AT5G57160 DNA ligase Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4),Os04g0606450 protein (Fragment) Q7X7E9,C7J1S6 DNLI4_ORYSJ,C7J1S6_ORYSJ LIG4 Os04g0606450 LOC_Os04g51700 OSJNBa0035M09.8,Os04g0606450 Os04g0606450 OSNPB_040606450 ENOG411DV6K Q9SSR6 PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial 60420 Pentatricopeptide repeat-containing protein At1g52640, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2035206; AT1G52640 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DV6M EGY1 Q949Y5 EGY1_ARATH Probable zinc metalloprotease EGY1, chloroplastic (EC 3.4.24.-) (Protein AMMONIUM OVERLY SENSITIVE 1) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1) (AtEGY1) DISRUPTION PHENOTYPE: Reduced chlorophyll accumulation, defects in chloroplast development and abnormal hypocotyl gravicurvature. {ECO:0000269|PubMed:15659096, ECO:0000269|PubMed:18097640}. Dual phenotype reduced chlorophyll content and gravicurvature-defective. Significant increase in anthocyanin content abnormal chloroplasts reduced photosynthetic capacity. Severely reduced lamellae lipid membranes in the plastids. The mutant plants have retarded growth phenotypes. The plastids of the mutant line had fewer stromal thylakoids no grana less starch grains and more densely stained globular structures that likely represent plastoglobuli. Moreover the resultant defects in chloroplast integrity undoubtedly lead to a dramatic decrease in the photosynthetic capacity which consequently results in smaller plants and lower seed number. At the same time abnormal chloroplasts and reduced photosynthetic capacity may create a nutritional stress response which is marked by a significant increase in the anthocyanin levels. This finding is consistent with the observations that anthocyanins are induced by a number of environmental stresses.,Suppresses elongation and gravicurviture in light grown hypocotyls. Yellow-green cotyledons; Abnormal hypocotyl gravicurvature-N. Li-2005 FUNCTION: Membrane-associated and ATP-independent metalloprotease required for development of both thylakoid grana and well-organized lamellae in chloroplast. Required for the accumulation of chlorophyll and chlorophyll a/b binding (CAB) proteins (from both PS I and PS II) in chloroplast membranes, and for grana formation and normal chloroplast development. Involved in the regulation of nuclear gene expression in response to ammonium stress and interacts with ABA signaling. Carries out beta-casein degradation in an ATP-independent manner in vitro. {ECO:0000269|PubMed:15659096, ECO:0000269|PubMed:18097640, ECO:0000269|PubMed:23064408}. 3.4.24.- 59501 Probable zinc metalloprotease EGY1, chloroplastic (EC 3.4.24.-) (Protein AMMONIUM OVERLY SENSITIVE 1) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1) (AtEGY1) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; metalloendopeptidase activity [GO:0004222]; chloroplast organization [GO:0009658]; gravitropism [GO:0009630]; multicellular organism development [GO:0007275]; negative gravitropism [GO:0009959]; photosystem I assembly [GO:0048564]; photosystem II assembly [GO:0010207]; response to ammonium ion [GO:0060359]; response to cation stress [GO:0043157]; response to ethylene [GO:0009723]; response to light stimulus [GO:0009416]; thylakoid membrane organization [GO:0010027] TISSUE SPECIFICITY: Expressed in roots, leaves, cotyledons, hypocotyls, stems, flowers and siliques. {ECO:0000269|PubMed:15659096}. locus:2182372; AT5G35220 Peptidase family M50 Probable zinc metalloprotease EGY1, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1) (OsEGY1),Os03g0792400 protein (Fragment) Q852K0,A0A0P0W416 EGY1_ORYSJ,A0A0P0W416_ORYSJ EGY1 Os03g0792400 LOC_Os03g57840 OSJNBb0060J21.23,Os03g0792400 OSNPB_030792400 FUNCTION: Probable membrane-associated metalloprotease that may be involved in chloroplast development. {ECO:0000250}. ENOG411DV6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 47 (OsMADS47),Os03g0186600 protein (SHORT VEGETATIVE PHASE protein, putative, expressed) (cDNA, clone: J075171C16, full insert sequence) Q5K4R0,Q10QR7 MAD47_ORYSJ,Q10QR7_ORYSJ MADS47 MDP Os03g0186600 LOC_Os03g08754,Os03g0186600 LOC_Os03g08754 Os03g0186600 OSNPB_030186600 FUNCTION: Probable transcription factor. ENOG411DV6A GATA14,GATA5 Q9M1U2,Q9FH57 GAT14_ARATH,GATA5_ARATH GATA transcription factor 14,GATA transcription factor 5 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. 23175,37091 GATA transcription factor 14,GATA transcription factor 5 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2096860;,locus:2155056; AT3G45170,AT5G66320 gata transcription factor Os04g0539500 protein,GATA transcription factor B9FGD6,Q6H635,A0A0P0WDC5 B9FGD6_ORYSJ,Q6H635_ORYSJ,A0A0P0WDC5_ORYSJ Os04g0539500 OsJ_15621 OSNPB_040539500,Os02g0645600 OSNPB_020645600 P0030D07.20 P0519A12.5,Os04g0539500 OSNPB_040539500 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000256|PIRNR:PIRNR016992}. ENOG411DV6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative serine esterase (DUF676) Os06g0154400 protein (Fragment) A0A0P0WT46 A0A0P0WT46_ORYSJ Os06g0154400 OSNPB_060154400 ENOG411DV6C AGL11,STK Q38836,A0A1P8B889,A0A1P8B895,F4JKV2,A8MQL9 AGL11_ARATH,A0A1P8B889_ARATH,A0A1P8B895_ARATH,F4JKV2_ARATH,A8MQL9_ARATH Agamous-like MADS-box protein AGL11 (Protein SEEDSTICK),K-box region and MADS-box transcription factor family protein FUNCTION: Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}. 26184,27391,26315,38243,29484 Agamous-like MADS-box protein AGL11 (Protein SEEDSTICK),K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel development [GO:0048440]; plant ovule development [GO:0048481]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of cell wall organization or biogenesis [GO:1903338]; regulation of double fertilization forming a zygote and endosperm [GO:0080155]; regulation of transcription, DNA-templated [GO:0006355]; seed coat development [GO:0010214]; seed development [GO:0048316]; transcription, DNA-templated [GO:0006351] locus:2140578; AT4G09960 Transcription factor NA NA NA NA NA NA NA ENOG411DV6D PNM1 Q9FME4 PP438_ARATH Pentatricopeptide repeat-containing protein PNM1, mitochondrial (PPR PROTEIN LOCALIZED TO THE NUCLEUS AND MITOCHONDRIA 1) DISRUPTION PHENOTYPE: Embryo-lethal at a early stage of development. {ECO:0000269|PubMed:21297037}. FUNCTION: RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. {ECO:0000269|PubMed:21297037}. 59143 Pentatricopeptide repeat-containing protein PNM1, mitochondrial (PPR PROTEIN LOCALIZED TO THE NUCLEUS AND MITOCHONDRIA 1) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; endonuclease activity [GO:0004519]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; regulation of translation [GO:0006417]; RNA modification [GO:0009451]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in root tips, lateral root primordia and leaf primordia. Highly detected in the mature pollen grains. {ECO:0000269|PubMed:21297037}. locus:2173552; AT5G60960 Pentatricopeptide repeat-containing protein Os07g0603900 protein (cDNA clone:001-123-C02, full insert sequence) Q6YVW1 Q6YVW1_ORYSJ Os07g0603900 Os07g0603900 OsJ_25034 OSJNBb0039M16.34 OSJNBb0040H10.7 OSNPB_070603900 ENOG411DV6E NEK6 Q9LT35 NEK6_ARATH Serine/threonine-protein kinase Nek6 (EC 2.7.11.1) (NimA-related protein kinase 6) (AtNek6) FUNCTION: May be involved in plant development processes. 2.7.11.1 47251 Serine/threonine-protein kinase Nek6 (EC 2.7.11.1) (NimA-related protein kinase 6) (AtNek6) ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cortical microtubule organization [GO:0043622]; lateral root formation [GO:0010311]; negative regulation of ethylene biosynthetic process [GO:0010366]; protein phosphorylation [GO:0006468] AT3G20860 serine threonine-protein kinase Serine/threonine-protein kinase Nek6 (EC 2.7.11.1) (NimA-related protein kinase 6) (OsNek6) Q6YY75 NEK6_ORYSJ NEK6 Os02g0590800 LOC_Os02g37830 OsJ_07328 OSJNBa0006O15.28 FUNCTION: May be involved in plant development processes. {ECO:0000305|PubMed:17886359}. ENOG411DV6F CBL5,CBL4,SOS3 Q7FZF1,O81223,A0A1P8B6M3,A0A1P8BDI3,A0A1P8BDK7 CNBL5_ARATH,CNBL4_ARATH,A0A1P8B6M3_ARATH,A0A1P8BDI3_ARATH,A0A1P8BDK7_ARATH Calcineurin B-like protein 5 (SOS3-like calcium-binding protein 4),Calcineurin B-like protein 4 (Protein SALT OVERLY SENSITIVE 3),Calcineurin B-like protein 5,Calcium-binding EF-hand family protein DISRUPTION PHENOTYPE: Delayed development and flowering. {ECO:0000269|PubMed:21445098}. Decrease of macronutrients concentration in the MS salt formulation to 1/20X results in a substantial reduction in primary root growth.,Mutant grown in greenhouse or growth chamber exhibits reduced shoot and root biomass relative to the wild-type.,Mutant grown on Pi-deficient medium for 25 days accumulate more anthocyanins than wild-type.,Substantially more pronounced prototypical Pi starvation root architecture responses than sos3-1 or wild-type seedlings. On Pi-limited medium mutant seedlings exhibit an inhibition of primary root growth an increase of lateral root development and length and higher root/shoot fresh weight ratio than wild-type. Enhanced resistance to Pseudomonas syringae DC3000. Smaller in stature. Impaired drought tolerance.,Suppression of NaCl sensitivity of sos3-1 seedlings. Sensitive to lithium, salt stress, and limited potassium -J. Zhu -1998 FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. May function as a positive regulator of salt or drought responses. {ECO:0000269|PubMed:20077023}.,FUNCTION: Acts as a calcium sensor involved in the regulatory pathway for the control of intracellular Na(+) and K(+) homeostasis and salt tolerance. Binding of a CBL protein to the regulatory NAF domain of a CIPK serine-threonine protein kinase lead to the activation of the kinase in a calcium-dependent manner. Operates in synergy with CIPK24/SOS2 to activate the plasma membrane Na(+)/H(+) antiporter SOS1. Involved in salt stress responses by mediating calcium-dependent microfilament reorganization. The CBL4/CIPK6 complex mediates translocation of AKT2 from the endoplasmic reticulum to the plasma membrane. Both myristoylation and S-acylation are required for AKT2 activation. {ECO:0000269|PubMed:10725350, ECO:0000269|PubMed:11006339, ECO:0000269|PubMed:12034882, ECO:0000269|PubMed:21445098, ECO:0000269|PubMed:23052592}. 23518,25693,22161,22860,20550 Calcineurin B-like protein 5 (SOS3-like calcium-binding protein 4),Calcineurin B-like protein 4 (Protein SALT OVERLY SENSITIVE 3),Calcineurin B-like protein 5,Calcium-binding EF-hand family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],calcineurin complex [GO:0005955]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine phosphatase activity [GO:0004723]; cellular potassium ion homeostasis [GO:0030007]; detection of calcium ion [GO:0005513]; hypotonic salinity response [GO:0042539],calcium ion binding [GO:0005509] TISSUE SPECIFICITY: Expressed in green tissues, but not in the roots. {ECO:0000269|PubMed:20077023}. locus:2125162;,locus:2169794; AT4G01420,AT5G24270 calcineurin b-like protein Calcineurin B-like protein 8,Calcineurin B-like protein 4,Calcineurin B-like protein 7,Os03g0448500 protein (Fragment) Q3HRN9,Q75KU4,Q3HRP0,Q0DQV4 CNBL8_ORYSJ,CNBL4_ORYSJ,CNBL7_ORYSJ,Q0DQV4_ORYSJ CBL8 Os02g0291400 LOC_Os02g18930 OJ1124_E11.15,CBL4 Os05g0534400 LOC_Os05g45810 OJ1014_C08.4 OsJ_19333 OSJNBa0053E05.21,CBL7 Os02g0291000 LOC_Os02g18880 OJ1086_G08.10,Os03g0448500 OSNPB_030448500 FUNCTION: Acts as a calcium sensor. May function as positive regulator of salt stress responses. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250, ECO:0000269|PubMed:18395997}.,FUNCTION: Acts as a calcium sensor involved in the regulatory pathway for the control of intracellular Na(+) and K(+) homeostasis and salt tolerance. Operates in synergy with CIPK24 to activate the plasma membrane Na(+)/H(+) antiporter SOS1. May function as positive regulator of salt stress responses. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. {ECO:0000269|PubMed:17142477}.,FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DV6G T17H3.11 Q9S808 Q9S808_ARATH At1g27620 (HXXXD-type acyl-transferase family protein) (T17H3.11 protein) (T22C5.6) ARA:AT1G27620-MONOMER; 49798 At1g27620 (HXXXD-type acyl-transferase family protein) (T17H3.11 protein) (T22C5.6) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2196909; AT1G27620 Omega-hydroxypalmitate O-feruloyl Os01g0382200 protein (Fragment),Hsr201-like (Os01g0104900 protein),Hsr201-like (Os01g0104900 protein) (cDNA clone:J033031D14, full insert sequence) Q0JMM4,Q657X9,Q9FE44 Q0JMM4_ORYSJ,Q657X9_ORYSJ,Q9FE44_ORYSJ Os01g0382200 Os01g0382200 OSNPB_010382200,P0005A05.3-2 Os01g0104900 P0436E04.28-2 OSNPB_010104900,P0005A05.3-1 P0436E04.28-1 Os01g0104900 OSNPB_010104900 ENOG411DV6X O23278 PP310_ARATH Pentatricopeptide repeat-containing protein At4g14190, chloroplastic 57903 Pentatricopeptide repeat-containing protein At4g14190, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2129475; AT4G14190 pentatricopeptide repeat-containing protein At4g14190 NA NA NA NA NA NA NA ENOG411DV6Y Q9LHE8 Q9LHE8_ARATH AT3g19970/MZE19_2 (Alpha/beta-Hydrolases superfamily protein) 47096 AT3g19970/MZE19_2 (Alpha/beta-Hydrolases superfamily protein) hydrolase activity [GO:0016787] locus:2095375; AT3G19970 transmembrane protein 53-like Os06g0730300 protein (cDNA clone:J013114F10, full insert sequence) Q0D9A4 Q0D9A4_ORYSJ Os06g0730300 Os06g0730300 OSNPB_060730300 ENOG411DV6Z Q94AH3,Q9LNK7,F4JKQ7,A0A1P8AR95 NIPA4_ARATH,NIPA3_ARATH,NIPA5_ARATH,A0A1P8AR95_ARATH Probable magnesium transporter NIPA4,Probable magnesium transporter NIPA3,Probable magnesium transporter NIPA5,Probable magnesium transporter FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). {ECO:0000250}.,FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. 37473,39797,41861,38095 Probable magnesium transporter NIPA4,Probable magnesium transporter NIPA3,Probable magnesium transporter NIPA5,Probable magnesium transporter early endosome [GO:0005769]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095]; magnesium ion transport [GO:0015693],early endosome [GO:0005769]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095] locus:2016084;,locus:2009343;,locus:2136912; AT1G71900,AT1G34470,AT4G09640 magnesium transporter NIPA2-like Probable magnesium transporter,Probable magnesium transporter (Fragment) Q5N7I7,Q60EN7,A0A0P0VBC0 Q5N7I7_ORYSJ,Q60EN7_ORYSJ,A0A0P0VBC0_ORYSJ Os01g0882300 B1065E10.24 OSNPB_010882300,Os05g0424800 OJ1212_B02.12 OsJ_18603 OSNPB_050424800,Os01g0882300 OSNPB_010882300 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. ENOG411DV6P KIPK1,KIPK2 Q9LFA2,Q9SJM3 KIPK1_ARATH,KIPK2_ARATH Serine/threonine-protein kinase KIPK1 (EC 2.7.11.1) (KCBP-interacting protein kinase),Serine/threonine-protein kinase KIPK2 (EC 2.7.11.1) FUNCTION: Could be involved in the negative regulation of root growth. {ECO:0000269|PubMed:25262228}.,FUNCTION: Serine/threonine-protein kinase that could be involved in the negative regulation of root growth. {ECO:0000269|PubMed:25262228}. 2.7.11.1 102694,104521 Serine/threonine-protein kinase KIPK1 (EC 2.7.11.1) (KCBP-interacting protein kinase),Serine/threonine-protein kinase KIPK2 (EC 2.7.11.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein kinase binding [GO:0019901]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase binding [GO:0019901]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556] TISSUE SPECIFICITY: Expressed in roots, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:10788494, ECO:0000269|PubMed:16973627}. locus:2085191;,locus:2049485; AT3G52890,AT2G36350 serine threonine-protein kinase KIPK-like Os12g0480200 protein (Fragment),Os04g0410200 protein A0A0N7KU13,A0A0P0WA27 A0A0N7KU13_ORYSJ,A0A0P0WA27_ORYSJ Os12g0480200 OSNPB_120480200,Os04g0410200 OSNPB_040410200 ENOG411DV6Q Q9SX54,Q9M1B9,Q9LNE3,Q9SID0,Q9LNE4 SCRK8_ARATH,SCRK4_ARATH,SCRK2_ARATH,SCRK1_ARATH,SCRK3_ARATH Putative fructokinase-8 (EC 2.7.1.4),Probable fructokinase-4 (EC 2.7.1.4),Probable fructokinase-2 (EC 2.7.1.4),Probable fructokinase-1 (EC 2.7.1.4),Probable fructokinase-3 (EC 2.7.1.4) FUNCTION: May play an important role in maintaining the flux of carbon towards starch formation. {ECO:0000250|UniProtKB:Q6XZ79}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT1G50390-MONOMER;,ARA:AT3G59480-MONOMER;,ARA:AT1G06030-MONOMER;,ARA:AT2G31390-MONOMER;,ARA:AT1G06020-MONOMER; Starch and sucrose metabolism (00500),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 2.7.1.4 23467,35044,35893,35275,37628 Putative fructokinase-8 (EC 2.7.1.4),Probable fructokinase-4 (EC 2.7.1.4),Probable fructokinase-2 (EC 2.7.1.4),Probable fructokinase-1 (EC 2.7.1.4),Probable fructokinase-3 (EC 2.7.1.4) ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; starch biosynthetic process [GO:0019252],plasmodesma [GO:0009506]; ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; starch biosynthetic process [GO:0019252],cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; starch biosynthetic process [GO:0019252] locus:2011897;,locus:2097553;,locus:2198831;,locus:2061320;,locus:2198821; AT1G50390,AT3G59480,AT1G06030,AT2G31390,AT1G06020 May play an important role in maintaining the flux of carbon towards starch formation Fructokinase-1 (EC 2.7.1.4) (Fructokinase I) (OsFKI) Q0JGZ6 SCRK1_ORYSJ FRK1 FKI Os01g0894300 LOC_Os01g66940 B1078G07.45-1 B1078G07.45-2 P0696G06.9 FUNCTION: Fructokinase that may play an important role in maintaining the flux of carbon towards starch formation. May also be involved in a sugar-sensing pathway. {ECO:0000269|PubMed:12475618}. ENOG411DV6R Q7Y231 Q7Y231_ARATH Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (At1g45150) (Uncharacterized protein At1g45150) 72370 Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (At1g45150) (Uncharacterized protein At1g45150) transferase activity, transferring glycosyl groups [GO:0016757] locus:2028275; AT1G45150 NA Os07g0581300 protein (cDNA clone:J033129C21, full insert sequence),Os07g0581300 protein (Fragment) Q7XI89,A0A0N7KNR3 Q7XI89_ORYSJ,A0A0N7KNR3_ORYSJ Os07g0581300 OJ1301_C12.7 OSNPB_070581300 P0453G03.31,Os07g0581300 OSNPB_070581300 ENOG411DV6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tyramine N-feruloyltransferase 4 GCN5-related N-acetyltransferase, putative, expressed (Os03g0151600 protein) (cDNA clone:J033012G12, full insert sequence),Os03g0151600 protein Q10RP2,Q0DV39 Q10RP2_ORYSJ,Q0DV39_ORYSJ Os03g0151600 LOC_Os03g05710 OSNPB_030151600,Os03g0151600 OSNPB_030151600 ENOG411DV6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase Glutathione S-transferase parC, putative, expressed (Os10g0525500 protein) (cDNA clone:001-111-C12, full insert sequence),Glutathione S-transferase GSTU31 (Os10g0525800 protein) (Fragment),Glutathione S-transferase, N-terminal domain containing protein, expressed (Os10g0525400 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU15) (cDNA clone:001-039-H04, full insert sequence) (cDNA clone:006-303-G04, full insert sequence) (cDNA clone:J013099B17, full insert sequence),Glutathione S-transferase, N-terminal domain containing protein, expressed (Os10g0481300 protein),Os10g0525400 protein Q7G228,Q6QN18,Q945W3,Q7XDA6,A0A0P0XWG4 Q7G228_ORYSJ,Q6QN18_ORYSJ,Q945W3_ORYSJ,Q7XDA6_ORYSJ,A0A0P0XWG4_ORYSJ Os10g0525500 LOC_Os10g38150 OSNPB_100525500,Os10g0525800 Os10g0525800 OSNPB_100525800,Os10g0525400 LOC_Os10g38140 Os10g0525400 OsJ_32219 OSJNBb0005J14.24 OSNPB_100525400,Os10g0481300 LOC_Os10g34020 OSNPB_100481300,Os10g0525400 OSNPB_100525400 ENOG411DV6U THY-2,THY-1 Q05763,Q05762,A0A1P8B676,A0A1P8B0M1,A0A1P8B685,A0A1P8B679 DRTS2_ARATH,DRTS1_ARATH,A0A1P8B676_ARATH,A0A1P8B0M1_ARATH,A0A1P8B685_ARATH,A0A1P8B679_ARATH Bifunctional dihydrofolate reductase-thymidylate synthase 2 (DHFR-TS 2) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)],Bifunctional dihydrofolate reductase-thymidylate synthase 1 (DHFR-TS 1) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)],Bifunctional dihydrofolate reductase-thymidylate synthase,Thymidylate synthase 1,Thymidylate synthase 2 FUNCTION: Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism. Can play two different roles depending on the source of dihydrofolate: de novo synthesis of tetrahydrofolate or recycling of the dihydrofolate released as one of the end products of the TS catalyzed reaction. Catalyzes an essential reaction for de novo glycine and purine synthesis, DNA precursor synthesis, and for the conversion of dUMP to dTMP.,FUNCTION: Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism. {ECO:0000256|PIRNR:PIRNR000389}. PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 5,6,7,8-tetrahydrofolate from 7,8-dihydrofolate: step 1/1.,PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 5,6,7,8-tetrahydrofolate from 7,8-dihydrofolate: step 1/1. {ECO:0000256|PIRNR:PIRNR000389}. ARA:AT4G34570-MONOMER;,ARA:AT2G16370-MONOMER; R-ATH-499943; Folate biosynthesis (00790),One carbon pool by folate (00670),Pyrimidine metabolism (00240),Metabolic pathways (01100) 1.5.1.3; 2.1.1.45 63209,58143,57939,47089,45295,60317 Bifunctional dihydrofolate reductase-thymidylate synthase 2 (DHFR-TS 2) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)],Bifunctional dihydrofolate reductase-thymidylate synthase 1 (DHFR-TS 1) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)],Bifunctional dihydrofolate reductase-thymidylate synthase,Thymidylate synthase 1,Thymidylate synthase 2 dihydrofolate reductase activity [GO:0004146]; thymidylate synthase activity [GO:0004799]; 10-formyltetrahydrofolate biosynthetic process [GO:0009257]; dTMP biosynthetic process [GO:0006231]; glycine biosynthetic process [GO:0006545]; one-carbon metabolic process [GO:0006730],cytosol [GO:0005829]; dihydrofolate reductase activity [GO:0004146]; thymidylate synthase activity [GO:0004799]; 10-formyltetrahydrofolate biosynthetic process [GO:0009257]; dTMP biosynthetic process [GO:0006231]; glycine biosynthetic process [GO:0006545]; one-carbon metabolic process [GO:0006730],dihydrofolate reductase activity [GO:0004146]; thymidylate synthase activity [GO:0004799]; dTMP biosynthetic process [GO:0006231]; glycine biosynthetic process [GO:0006545]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate biosynthetic process [GO:0046654],integral component of membrane [GO:0016021]; dihydrofolate reductase activity [GO:0004146]; thymidylate synthase activity [GO:0004799]; dTMP biosynthetic process [GO:0006231]; glycine biosynthetic process [GO:0006545]; one-carbon metabolic process [GO:0006730],dihydrofolate reductase activity [GO:0004146]; NADP binding [GO:0050661]; glycine biosynthetic process [GO:0006545]; nucleotide biosynthetic process [GO:0009165] locus:2139544;,locus:2042649; AT4G34570,AT2G16370 Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (By similarity) Putative bifunctional dihydrofolate reductase-thymidylate synthase (DHFR-TS) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)],Bifunctional dihydrofolate reductase-thymidylate synthase,Os11g0615250 protein (Fragment) Q2QRX6,Q2R481,B9GCZ3,A0A0P0Y4B5 DRTS_ORYSJ,Q2R481_ORYSJ,B9GCZ3_ORYSJ,A0A0P0Y4B5_ORYSJ Os12g0446900 LOC_Os12g26060,Os11g0484400 LOC_Os11g29390 OSNPB_110484400,Os12g0446900 OsJ_35972 OSNPB_120446900,Os11g0615250 OSNPB_110615250 FUNCTION: Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism. Can play two different roles depending on the source of dihydrofolate: de novo synthesis of tetrahydrofolate or recycling of the dihydrofolate released as one of the end products of the TS catalyzed reaction. Catalyzes an essential reaction for de novo glycine and purine synthesis, DNA precursor synthesis, and for the conversion of dUMP to dTMP (By similarity). {ECO:0000250}.,FUNCTION: Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism. {ECO:0000256|PIRNR:PIRNR000389}. ENOG411DV6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase 1 (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) P37834,Q8GVP1 PER1_ORYSJ,Q8GVP1_ORYSJ PRX74 Os05g0499300 LOC_Os05g41990 OJ1057_B02.6 OsJ_19081,P0681F05.126 Os07g0531000 prx103 OsJ_24538 OSNPB_070531000 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. ENOG411DV6W Q9FX83,Q42599 NDS8B_ARATH,NDS8A_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3),NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). May donate electrons to ubiquinone. {ECO:0000250}. ARA:AT1G16700-MONOMER;,ARA:AT1G79010-MONOMER;MetaCyc:AT1G79010-MONOMER; R-ATH-6799198; 1.6.5.3; 1.6.99.3 25378,25503 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3),NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; 4 iron, 4 sulfur cluster binding [GO:0051539]; metal ion binding [GO:0046872]; NADH dehydrogenase (ubiquinone) activity [GO:0008137] locus:2015636;,locus:2207285; AT1G16700,AT1G79010 NADH dehydrogenase ubiquinone iron-sulfur protein 8 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative, expressed (Os03g0774200 protein) (Putative NADH dehydrogenase) (cDNA clone:001-203-F01, full insert sequence) (cDNA clone:J013041L15, full insert sequence) Q7XZW1 Q7XZW1_ORYSJ LOC_Os03g56300 Os03g0774200 OSJNBb0094O03.18 OSNPB_030774200 ENOG411DV68 O64855,Q1PEU6 O64855_ARATH,Q1PEU6_ARATH At2g44200/F6E13.34 (Expressed protein) (Pre-mRNA splicing factor domain-containing protein),Pre-mRNA splicing factor domain-containing protein R-ATH-72163; 57784,18414 At2g44200/F6E13.34 (Expressed protein) (Pre-mRNA splicing factor domain-containing protein),Pre-mRNA splicing factor domain-containing protein locus:2050472;,locus:2827488; AT2G44200,AT2G44195 Pre-mRNA splicing factor Os08g0500200 protein (cDNA clone:001-124-H11, full insert sequence),Os08g0500200 protein (Fragment) Q6ZKL9,A0A0P0XHB0 Q6ZKL9_ORYSJ,A0A0P0XHB0_ORYSJ OJ1118_A06.14-1 Os08g0500200 OSNPB_080500200,Os08g0500200 OSNPB_080500200 ENOG411DV69 Q9FX73,F4I4H2 Q9FX73_ARATH,F4I4H2_ARATH AT1G16560 protein (F19K19.12 protein) (Per1-like family protein),Per1-like family protein 39375,32812 AT1G16560 protein (F19K19.12 protein) (Per1-like family protein),Per1-like family protein integral component of membrane [GO:0016021] locus:2017968; AT1G16560 post-GPI attachment to proteins factor Os05g0220100 protein (cDNA clone:J033113P15, full insert sequence) Q75G54 Q75G54_ORYSJ OSJNBb0043H23.1 Os05g0220100 B1003C08.3 OsJ_17581 OSNPB_050220100 ENOG411DV61 DRM1,DRM2 Q9LXE5,Q9M548 DRM1L_ARATH,DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM1 (EC 2.1.1.37) (Protein DOMAINS REARRANGED METHYLASE 1),DNA (cytosine-5)-methyltransferase DRM2 (EC 2.1.1.37) (Protein DOMAINS REARRANGED METHYLASE 2) Wild type morphology; double mutant that retains preexixting CpG methylation at the endogenous FWA locus but lacks de novo CpG methylation normaly associated with FWA transgene silencing; blocks de novo CpNpG and asymmetric methylation and gene silencing of the endogenous Superman (SUP) gene which is normally triggered by an inverted SUP repeat doesnt show reactivation of previously established SUP epigenetic silenced alleles FUNCTION: Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation. {ECO:0000269|PubMed:12121623, ECO:0000269|PubMed:12151602, ECO:0000269|PubMed:14680640}.,FUNCTION: Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation (RdDM) (PubMed:12121623, PubMed:12151602, PubMed:14680640). Acts as major DNA methyltransferase in the RdDM pathway, and is essential for RNA-directed de novo DNA methylation of cytosines in all sequence contexts (PubMed:21060858, PubMed:21212233). Associates with long non-coding RNA (lncRNA) produced by RNA polymerase V (Pol V). This association is dependent on AGO4 and IDN2, and results in DNA methylation of RdDM target loci (PubMed:24862207). {ECO:0000269|PubMed:12121623, ECO:0000269|PubMed:12151602, ECO:0000269|PubMed:14680640, ECO:0000269|PubMed:21060858, ECO:0000269|PubMed:21212233, ECO:0000269|PubMed:24862207}. MISCELLANEOUS: DRM2 is expressed at much higher levels than DRM1, which is scarcely detected, suggesting that DRM2 is the predominant de novo methylase. 2.1.1.37 70918,70431 DNA (cytosine-5)-methyltransferase DRM1 (EC 2.1.1.37) (Protein DOMAINS REARRANGED METHYLASE 1),DNA (cytosine-5)-methyltransferase DRM2 (EC 2.1.1.37) (Protein DOMAINS REARRANGED METHYLASE 2) nucleus [GO:0005634]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; defense response to fungus [GO:0050832]; DNA methylation [GO:0006306]; gene silencing [GO:0016458]; histone H3-K9 methylation [GO:0051567]; methylation-dependent chromatin silencing [GO:0006346],nucleoplasm [GO:0005654]; nucleus [GO:0005634]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; DNA-methyltransferase activity [GO:0009008]; defense response to fungus [GO:0050832]; DNA methylation [GO:0006306]; gene silencing [GO:0016458]; histone H3-K9 methylation [GO:0051567] TISSUE SPECIFICITY: Expressed in roots, inflorescences and at lower levels in leaves. {ECO:0000269|PubMed:10781108}. locus:2150991;,locus:2222627; AT5G15380,AT5G14620 DNA (cytosine-5-)-methyltransferase Probable inactive DNA (cytosine-5)-methyltransferase DRM1B (Protein DOMAINS REARRANGED METHYLASE 1B),DNA (cytosine-5)-methyltransferase DRM2 (EC 2.1.1.37) (OsDRM2) (Protein DOMAINS REARRANGED METHYLASE 2),Os05g0313900 protein (Fragment) Q2QYR5,Q10SU5,A0A0P0WKJ1 DRM1B_ORYSJ,DRM2_ORYSJ,A0A0P0WKJ1_ORYSJ DRM1B Os12g0108900 LOC_Os12g01800,DRM2 Os03g0110800 LOC_Os03g02010 OSJNBb0043C10.1,Os05g0313900 OSNPB_050313900 DISRUPTION PHENOTYPE: Pleiotropic developmental defects such as growth defects, semi-dwarfed phenotype, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility. {ECO:0000269|PubMed:24280374}. FUNCTION: Involved in de novo DNA methylation. Involved in RNA-directed DNA methylation (RdDM). {ECO:0000250|UniProtKB:Q10SU5}.,FUNCTION: Involved in de novo DNA methylation. Required for CpG and non-CpG methylation. Required for normal establishment and maintenance of RNA-directed DNA methylation (RdDM) mediated by small interfering RNAs (siRNAs). Regulates proper plant development in both vegetative and reproductive stages through DNA methylation. {ECO:0000269|PubMed:24280374}. ENOG411DV62 Q94BN1,A0A1P8B3V4,F4J153 Q94BN1_ARATH,A0A1P8B3V4_ARATH,F4J153_ARATH Signal transducer, putative (DUF3550/UPF0682) (Uncharacterized protein At4g40050),Signal transducer, putative (DUF3550/UPF0682) 68272,52780,68635 Signal transducer, putative (DUF3550/UPF0682) (Uncharacterized protein At4g40050),Signal transducer, putative (DUF3550/UPF0682) nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; transcription, DNA-templated [GO:0006351],transcription corepressor activity [GO:0003714]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; transcription, DNA-templated [GO:0006351] locus:2140040;,locus:2096424; AT4G40050,AT3G03570 Protein of unknown function (DUF3550/UPF0682) Os09g0470900 protein (cDNA clone:J013154D16, full insert sequence),Os09g0470900 protein (cDNA clone:J013041H18, full insert sequence),Os09g0573200 protein,Os09g0573200 protein (Fragment) B7EKG8,Q6K493,Q5Z480,Q0IZE6,A0A0P0XQR0 B7EKG8_ORYSJ,Q6K493_ORYSJ,Q5Z480_ORYSJ,Q0IZE6_ORYSJ,A0A0P0XQR0_ORYSJ Os09g0470900 OSNPB_090470900,OJ1595_D08.27-1 Os09g0470900 OJ1118_B06.6-1 OsJ_29707 OSNPB_090470900,B1130E07.18-1 Os09g0573200 OsJ_30446 OSNPB_090573200,Os09g0573200 OSNPB_090573200 ENOG411DV63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os01g0814300 protein (PPR repeat containing protein-like) (Selenium-binding protein-like) Q8RZK3 Q8RZK3_ORYSJ P0432B10.26 Os01g0814300 OSJNBa0085D07.26 OSNPB_010814300 ENOG411DV64 DG1 Q9FJW6 PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570, chloroplastic (Protein DELAYED GREENING 1) (Protein EMBRYO DEFECTIVE 1408) Homozygous plants have siliques segregating ca. 40% embryo lethal with embryos arresting at a variety of stages. Embryo defective; Transition-D. Meinke-2004 FUNCTION: Involved in the regulation of early chloroplast development and chloroplast gene expression in a SIGF-dependent manner. {ECO:0000269|PubMed:18400937, ECO:0000269|PubMed:20626654}. 92059 Pentatricopeptide repeat-containing protein At5g67570, chloroplastic (Protein DELAYED GREENING 1) (Protein EMBRYO DEFECTIVE 1408) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast organization [GO:0009658]; RNA modification [GO:0009451]; transcription from plastid promoter [GO:0042793] DEVELOPMENTAL STAGE: Expressed in the early stage of development and decreased as the age and developmental state of both the plant and leaves increased. {ECO:0000269|PubMed:18400937}. locus:2158601; AT5G67570 pentatricopeptide repeat-containing protein At5g67570 Os05g0315100 protein A0A0P0WKJ4 A0A0P0WKJ4_ORYSJ Os05g0315100 OSNPB_050315100 ENOG411DV65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os06g0500700 protein (cDNA, clone: J065139M14, full insert sequence),Os06g0497200 protein,Os10g0172100 protein,Os06g0497350 protein B7F8Q5,A0A0P0WWU1,A0A0P0XS22,A0A0P0WXA8 B7F8Q5_ORYSJ,A0A0P0WWU1_ORYSJ,A0A0P0XS22_ORYSJ,A0A0P0WXA8_ORYSJ Os06g0500700 OSNPB_060500700,Os06g0497200 OSNPB_060497200,Os10g0172100 OSNPB_100172100,Os06g0497350 OSNPB_060497350 ENOG411DV66 HPGT3,HPGT2 Q5XEZ1,Q94A05,A0A1P8B0G1 B3GT9_ARATH,B3GTA_ARATH,A0A1P8B0G1_ARATH Hydroxyproline O-galactosyltransferase HPGT3 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 9),Hydroxyproline O-galactosyltransferase HPGT2 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 10),Hexosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: Reduced levels of arabinogalactan proteins. {ECO:0000269|PubMed:25600942}. FUNCTION: Possesses hydroxyproline O-galactosyltransferase activity. Transfers galactose from UDP-galactose to hydroxyproline residues in the arabinogalactan proteins (AGPs). Is specific for AGPs containing non-contiguous peptidyl hydroxyproline residues. The addition of galactose onto the peptidyl hydroxyproline residues in AGP core proteins represents the first committed step in arabinogalactan polysaccharide addition. AGP glycans play essential roles in both vegetative and reproductive plant growth. {ECO:0000269|PubMed:25600942}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. 2.4.1.- 39059,39272,30211 Hydroxyproline O-galactosyltransferase HPGT3 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 9),Hydroxyproline O-galactosyltransferase HPGT2 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 10),Hexosyltransferase (EC 2.4.1.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; arabinogalactan protein metabolic process [GO:0010405]; protein O-linked glycosylation via hydroxyproline [GO:0018258],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:25600942}. locus:2059531;,locus:2116627; AT2G25300,AT4G32120 galactosyltransferase activity Hexosyltransferase (EC 2.4.1.-) Q9LDB7 Q9LDB7_ORYSJ Os06g0177300 Os06g0176200 OsJ_20323 OSNPB_060176200 OSNPB_060177300 P0015E04.24 P0015E04.37 ENOG411DV67 ABCF4 Q9M1H3 AB4F_ARATH ABC transporter F family member 4 (ABC transporter ABCF.4) (AtABCF4) (GCN20-type ATP-binding cassette protein GCN4) R-ATH-382556; 80481 ABC transporter F family member 4 (ABC transporter ABCF.4) (AtABCF4) (GCN20-type ATP-binding cassette protein GCN4) ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] locus:505006397; AT3G54540 ABC transporter F family member ABC transporter family protein, expressed (Os03g0441500 protein) (Putative ABC transporter) (cDNA clone:J033103K23, full insert sequence),Os03g0441500 protein (Fragment) Q8S694,A0A0P0VZX4 Q8S694_ORYSJ,A0A0P0VZX4_ORYSJ Os03g0441500 LOC_Os03g32630 Os03g0441500 OJ1004_D04.29 OSNPB_030441500,Os03g0441500 OSNPB_030441500 ENOG411DPR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0501800 protein A0A0P0WPD8 A0A0P0WPD8_ORYSJ Os05g0501800 OSNPB_050501800 ENOG411DPR3 RABA2A O04486 RAA2A_ARATH Ras-related protein RABA2a (AtRABA2a) (Ras-related protein Rab11C) (AtRab11C) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-5620916;R-ATH-8873719; Endocytosis (04144),Pancreatic secretion (04972),Vasopressin-regulated water reabsorption (04962),Endocrine and other factor-regulated calcium reabsorption (04961) 24108 Ras-related protein RABA2a (AtRABA2a) (Ras-related protein Rab11C) (AtRab11C) cell plate [GO:0009504]; cytosol [GO:0005829]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cytokinesis by cell plate formation [GO:0000911]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in root tips. {ECO:0000269|PubMed:18239134}. locus:2024276; AT1G09630 ras-related protein Os05g0105100 protein (Putative GTP-binding protein) (cDNA clone:J033104P17, full insert sequence),Os01g0848700 protein (Putative Ras-related GTP-binding protein RAB11C) (cDNA clone:J023087L18, full insert sequence),Os03g0823700 protein Q75M17,Q941S7,A0A0P0W501 Q75M17_ORYSJ,Q941S7_ORYSJ,A0A0P0W501_ORYSJ Os05g0105100 OsJ_16810 OSJNBb0035J08.5 OSNPB_050105100 P0668H12.20,Os01g0848700 Os01g0848700 OsJ_04079 OSNPB_010848700 P0005H10.32,Os03g0823700 OSNPB_030823700 ENOG411DPR1 MCA23.24 B3H4C1,A0A1P8BC70,A0A1P8BC67,A0A1P8BC52,F4K034,F4K039,F4K038,B6EUB5,B3H490,F4K036 B3H4C1_ARATH,A0A1P8BC70_ARATH,A0A1P8BC67_ARATH,A0A1P8BC52_ARATH,F4K034_ARATH,F4K039_ARATH,F4K038_ARATH,B6EUB5_ARATH,B3H490_ARATH,F4K036_ARATH Heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) ARA:GQT-105-MONOMER; R-ATH-2024096;R-ATH-6798695; 49796,45636,29117,42918,49367,38410,49178,33255,40526,33611 Heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2160902; AT5G47900 Heparan-alpha-glucosaminide Os04g0404900 protein,Os05g0155700 protein (cDNA clone:J013070I02, full insert sequence),Expressed protein (Os11g0543500 protein) (cDNA clone:J013119B18, full insert sequence),Os02g0526000 protein (Fragment),Os02g0526000 protein Q0JDG7,Q5WMX9,Q2R301,A0A0P0VJS4,A0A0P0VJU0,A0A0P0VJQ6 Q0JDG7_ORYSJ,Q5WMX9_ORYSJ,Q2R301_ORYSJ,A0A0P0VJS4_ORYSJ,A0A0P0VJU0_ORYSJ,A0A0P0VJQ6_ORYSJ Os04g0404900 Os04g0404900 OsJ_14685 OSNPB_040404900,Os05g0155700 OsJ_17178 OSNPB_050155700 P0431G05.9,Os11g0543500 LOC_Os11g34110 Os11g0543500 OsJ_34172 OSNPB_110543500,Os02g0526000 OSNPB_020526000 ENOG411DPR6 Q94F46,F4HSN6,F4HSN5 Q94F46_ARATH,F4HSN6_ARATH,F4HSN5_ARATH AT4g27310/M4I22_120 (At1g13990/F16A14.28) (Plant/protein),Plant/protein 30890,34199,34331 AT4g27310/M4I22_120 (At1g13990/F16A14.28) (Plant/protein),Plant/protein locus:2014809; AT1G13990 Protein of unknown function (DUF3110) Expressed protein (Os03g0168200 protein) (cDNA clone:J013031J20, full insert sequence) Q8S7U4 Q8S7U4_ORYSJ OSJNBa0091P11.31 LOC_Os03g07190 Os03g0168200 OsJ_09558 OSNPB_030168200 ENOG411DPR7 Q9LZK9,Q9LTI2,A0A1P8BF18,F4KJ69 Q9LZK9_ARATH,Q9LTI2_ARATH,A0A1P8BF18_ARATH,F4KJ69_ARATH At5g02230 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) (Uncharacterized protein At5g02230) (Uncharacterized protein T7H20_280),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Putative ripening protein) (Putative ripening-related protein) (Ripening-related protein-like; hydrolase-like),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 31345,32104,35672,32005 At5g02230 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) (Uncharacterized protein At5g02230) (Uncharacterized protein T7H20_280),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Putative ripening protein) (Putative ripening-related protein) (Ripening-related protein-like; hydrolase-like),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein hydrolase activity [GO:0016787]; metabolic process [GO:0008152],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; metabolic process [GO:0008152] locus:2185223;,locus:2148343; AT5G02230,AT5G59480 haloacid dehalogenase-like hydrolase family protein Os01g0973000 protein (Ripening-related protein-like) (cDNA clone:J033133D12, full insert sequence),Haloacid dehalogenase-like hydrolase family protein, putative, expressed (Os03g0273800 protein) (cDNA clone:001-024-D05, full insert sequence) (cDNA clone:J023026N03, full insert sequence) Q5JM91,Q10ND1 Q5JM91_ORYSJ,Q10ND1_ORYSJ Os01g0973000 Os01g0973000 OsJ_04937 OSNPB_010973000 P0518C01.38 P0698H10.12,Os03g0273800 LOC_Os03g16670 Os03g0273800 OsJ_10314 OSNPB_030273800 ENOG411DPR4 RPA1A,RPA1C,RPA1E,Replication Protein A 1E Q9SKI4,Q9FHJ6,F4JSG3,A0A1P8B5B8,F4IJA6 RFA1A_ARATH,RFA1C_ARATH,RFA1E_ARATH,A0A1P8B5B8_ARATH,F4IJA6_ARATH Replication protein A 70 kDa DNA-binding subunit A (AtRPA70A) (AtRPA1-3) (Replication factor A protein 1A) (Replication protein A 1A) (AtRPA1A),Replication protein A 70 kDa DNA-binding subunit C (AtRPA70c) (AtRPA1-2) (Replication factor A protein 1C) (Replication protein A 1C) (AtRPA1C),Replication protein A 70 kDa DNA-binding subunit E (AtRPA70E) (AtRPA1-1) (Replication factor A protein 1E) (Replication protein A 1E) (AtRPA1E),Replication factor-A protein 1-like protein,Replication protein A 1A DISRUPTION PHENOTYPE: There are differing accounts of the mutant phenotypes. According to an early study with a limited number of progeny from different sources (PubMed:15978034), it is embryonic lethal when homozygous. However, a more recent study describes homozygous lines that show normal vegetative growth, but reduced fertility and meiotic defects (PubMed:19153602). {ECO:0000269|PubMed:15978034, ECO:0000269|PubMed:19153602}. This double mutant has a lower chiasma frequency than either single mutant but more chiasma than Atrpa1a/Atmsh4 or Atmsh4.,This double mutant has even lower fertility and shorter siliques than atrpa1 mutants. These mutants have a residual chiasmata frequency and distribution comparable to msh4 mutants.,Meiosis in pollen mother cells proceeds normally from early prophase I to the pachytene stage where full synapsis is observed in the mutants. However a reduced number of chiasmatas are detected in the mutants during chromosome condensation in late diplotene/diakinesis.Univalent chromosomes present at metaphase I cause mis-segregation at meiosis I and therefore aneuploid tetrads are observed following meiosis II. There is no evidence of chromosome fragmentation in these mutants suggesting that RPA1a is not required per se for the repair of double strand breaks during meiosis.,According to one report this T-DNA insertion causes lethality and the authors could not recover homozygous mutants from a heterozygous parent.,The rpa1a mutant has normal vegetative growth but lower levels of fertility. Siliques are shorter in rpa1a mutants than in wild type plants and their mean seed set per silique is reduced by ~68%. Pollen viability is also reduced in the mutants. Meiosis in pollen mother cells proceeds normally from early prophase I to the pachytene stage where full synapsis is observed in the mutants. However a reduced number of chiasmatas are detected in the mutants during chromosome condensation in late diplotene/diakinesis.Univalent chromosomes present at metaphase I cause mis-segregation at meiosis I and therefore aneuploid tetrads are observed following meiosis II. There is no evidence of chromosome fragmentation in these mutants suggesting that RPA1a is not required per se for the repair of double strand breaks during meiosis. There are no major defects in axis formation or synaptonemal complex formation in these mutants nor are the number of MSH4 foci altered. However there is a reduced number of MLH1 and MLH3 foci suggesting that more recombination intermediates are repaired as non-cross-overs Reduced fertility due to defects in meiosis; Sensitive to genotoxic stress-K. Tamura-2009 FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Plays an essential role at later stages of meiotic recombination events required for the formation of class I crossovers. Is essential for normal progression through meiosis in pollen mother cells. Is involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses, but does not seem to be required for the repair of meiotic DSBs. {ECO:0000269|PubMed:19153602, ECO:0000269|PubMed:19812063}.,FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (By similarity). {ECO:0000250}.,FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. {ECO:0000256|RuleBase:RU364130}. 72243,94394,85992,86123,69831 Replication protein A 70 kDa DNA-binding subunit A (AtRPA70A) (AtRPA1-3) (Replication factor A protein 1A) (Replication protein A 1A) (AtRPA1A),Replication protein A 70 kDa DNA-binding subunit C (AtRPA70c) (AtRPA1-2) (Replication factor A protein 1C) (Replication protein A 1C) (AtRPA1C),Replication protein A 70 kDa DNA-binding subunit E (AtRPA70E) (AtRPA1-1) (Replication factor A protein 1E) (Replication protein A 1E) (AtRPA1E),Replication factor-A protein 1-like protein,Replication protein A 1A nuclear chromatin [GO:0000790]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; chiasma assembly [GO:0051026]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; male gamete generation [GO:0048232]; male meiosis I [GO:0007141]; pollen development [GO:0009555]; reciprocal meiotic recombination [GO:0007131],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260],nucleus [GO:0005634]; DNA binding [GO:0003677]; zinc ion binding [GO:0008270]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260] TISSUE SPECIFICITY: Expressed in roots, leaves, stalks and flower buds. {ECO:0000269|PubMed:19812063}. locus:2054577;,locus:2163553;,locus:2134766; AT2G06510,AT5G45400,AT4G19130 replication protein A 70 kDa DNA-binding Replication protein A 70 kDa DNA-binding subunit A (OsRPA70a) (Replication factor A protein 1A) (Replication protein A 1A),Replication protein A 70 kDa DNA-binding subunit C (OsRPA70c) (Replication factor A protein 1C) (Replication protein A 1C),Replication protein A subunit (Fragment) Q6YZ49,Q65XV7,A0A0P0VQ56 RFA1A_ORYSJ,RFA1C_ORYSJ,A0A0P0VQ56_ORYSJ RPA1A RPA70A Os02g0776800 LOC_Os02g53680 OJ1534_E09.2 OsJ_08582 OSJNBb0013K01.36,RPA1C RPA70C Os05g0111000 LOC_Os05g02040 OsJ_16860 P0016H04.11,Os02g0776800 OSNPB_020776800 DISRUPTION PHENOTYPE: Normal phenotype during vegetative growth, but sterility at the reproductive stage. No formation of embryo sac in female meiocytes and abnormal chromosomal fragmentation after anaphase I in male meiocytes. {ECO:0000269|PubMed:19812186}. FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Plays an essential role in meiotic and somatic DNA repair, but is dispensable for DNA replication and homologous recombination. Is essential for normal progression through meiosis in pollen mother cells. Is involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. {ECO:0000269|PubMed:15978034, ECO:0000269|PubMed:19812186}.,FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (By similarity). {ECO:0000250}.,FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. {ECO:0000256|RuleBase:RU364130}. ENOG411DPR5 PLP3A,PLP3B Q6NPL9,Q8LCV1 PLP3A_ARATH,PLP3B_ARATH Thioredoxin domain-containing protein PLP3A (Phosducin-like protein 3A),Thioredoxin domain-containing protein PLP3B (Phosducin-like protein 3B) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants with reduced levels of both PLP3A and PLP3B show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy. {ECO:0000269|PubMed:18390592}. FUNCTION: Tubulin-binding protein involved in microtubule formation. {ECO:0000269|PubMed:18390592}. MISCELLANEOUS: Plant roots over-expressing PLP3A have increased microtubule resistance to propyzamide, an inhibitor of tubulin polymerization. Plants with reduced levels of both PLP3A and PLP3B show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy (PubMed:18390592). {ECO:0000305|PubMed:18390592}. 26263,26368 Thioredoxin domain-containing protein PLP3A (Phosducin-like protein 3A),Thioredoxin domain-containing protein PLP3B (Phosducin-like protein 3B) cytoplasm [GO:0005737]; microtubule [GO:0005874]; nucleus [GO:0005634]; beta-tubulin binding [GO:0048487]; anisotropic cell growth [GO:0051211]; cell redox homeostasis [GO:0045454]; cortical microtubule organization [GO:0043622]; cytokinesis by cell plate formation [GO:0000911]; nuclear division [GO:0000280]; nucleolus organization [GO:0007000]; queuosine biosynthetic process [GO:0008616] TISSUE SPECIFICITY: Expressed in embryos, shoot meristems, leaf primordia, root meristems, floral meristems and young floral buds. {ECO:0000269|PubMed:18390592}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, stems and flowers. {ECO:0000269|PubMed:18390592}. locus:2077942;,locus:2154945; AT3G50960,AT5G66410 Thioredoxin domain-containing protein Os05g0255600 protein (Putative ATP-binding protein) (cDNA clone:J033022A04, full insert sequence),Os11g0604700 protein Q60EF8,B9G893 Q60EF8_ORYSJ,B9G893_ORYSJ Os05g0255600 OsJ_17827 OSNPB_050255600 P0537C11.8,Os11g0604700 OsJ_34409 OSNPB_110604700 ENOG411DPR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DPR9 NRPB1 P18616 NRPB1_ARATH DNA-directed RNA polymerase II subunit 1 (DNA-directed RNA polymerase II subunit RPB1) (DNA polymerase II subunit B1) (EC 2.7.7.6) (DNA-directed RNA polymerase III largest subunit) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single-stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from NRPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (NRPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. {ECO:0000269|PubMed:19110459}. MISCELLANEOUS: The binding of ribonucleoside triphosphate to the RNA polymerase II transcribing complex probably involves a two-step mechanism. The initial binding seems to occur at the entry (E) site and involves a magnesium ion temporarily coordinated by three conserved aspartate residues of the two largest RNA Pol II subunits. The ribonucleoside triphosphate is transferred by a rotation to the nucleotide addition (A) site for pairing with the template DNA. The catalytic A site involves three conserved aspartate residues of the RNA Pol II largest subunit which permanently coordinate a second magnesium ion. R-ATH-113418;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 2.7.7.6 204626 DNA-directed RNA polymerase II subunit 1 (DNA-directed RNA polymerase II subunit RPB1) (DNA polymerase II subunit B1) (EC 2.7.7.6) (DNA-directed RNA polymerase III largest subunit) chloroplast [GO:0009507]; DNA-directed RNA polymerase II, core complex [GO:0005665]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; transcription from RNA polymerase II promoter [GO:0006366] locus:2125319; AT4G35800 DNA-directed RNA polymerase DNA-directed RNA polymerase subunit (EC 2.7.7.6) A0A0P0WI29 A0A0P0WI29_ORYSJ Os05g0151000 OSNPB_050151000 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU004279}. ENOG411DPRB A0A1P8B7Z4,A0A1P8B800,F4JP86 A0A1P8B7Z4_ARATH,A0A1P8B800_ARATH,F4JP86_ARATH tRNA/rRNA methyltransferase (SpoU) family protein 204337,204408,205252 tRNA/rRNA methyltransferase (SpoU) family protein RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; RNA processing [GO:0006396],RNA binding [GO:0003723]; rRNA (guanosine-2'-O-)-methyltransferase activity [GO:0070039]; tRNA (guanine) methyltransferase activity [GO:0016423]; enzyme-directed rRNA 2'-O-methylation [GO:0000453]; tRNA methylation [GO:0030488] locus:2129301; AT4G17610 SpoU rRNA Methylase family Os03g0100500 protein (Fragment),Os10g0142900 protein (cDNA clone:J013055N04, full insert sequence) (tRNA/rRNA methyltransferase, putative, expressed) Q0DW28,Q33B43 Q0DW28_ORYSJ,Q33B43_ORYSJ Os03g0100500 OSNPB_030100500,Os10g0142900 LOC_Os10g05290 OSNPB_100142900 ENOG411DPRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Probable xyloglucan glycosyltransferase 7 (EC 2.4.1.-) (Cellulose synthase-like protein C7) (OsCslC7),Probable xyloglucan glycosyltransferase 1 (EC 2.4.1.-) (Cellulose synthase-like protein C1) (OsCslC1),Os01g0766900 protein Q6L538,Q8LIY0,A0A0P0V8P3 CSLC7_ORYSJ,CSLC1_ORYSJ,A0A0P0V8P3_ORYSJ CSLC7 Os05g0510800 LOC_Os05g43530 OJ1005_B11.7,CSLC1 Os01g0766900 LOC_Os01g56130 OSJNBb0053G03.13,Os01g0766900 OSNPB_010766900 FUNCTION: Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose. Seems to work simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a noncellulosic polysaccharides of plant cell wall and consists of a glucan backbone substituted by xylose, galactose and fucose (By similarity). {ECO:0000250}. ENOG411DPRA O81740 O81740_ARATH Disease resistance protein (TIR-NBS class) (Uncharacterized protein AT4g23440) (Uncharacterized protein F16G20.140) 109157 Disease resistance protein (TIR-NBS class) (Uncharacterized protein AT4g23440) (Uncharacterized protein F16G20.140) plasma membrane [GO:0005886]; signal transduction [GO:0007165] locus:2117899; AT4G23440 NA Os01g0760400 protein (p0460E08.19 protein) Q94DS8 Q94DS8_ORYSJ P0460E08.19 Os01g0760400 OsJ_03529 OSNPB_010760400 P0512C01.8 ENOG411DPRF T32M21_200 Q9LZ65 Q9LZ65_ARATH AT5g04600/T32M21_200 (Putative RNA binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) (Rna binding protein-like) 25262 AT5g04600/T32M21_200 (Putative RNA binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) (Rna binding protein-like) nucleolus [GO:0005730]; RNA binding [GO:0003723] locus:2184367; AT5G04600 MKI67 FHA domain-interacting nucleolar phosphoprotein-like Os08g0412200 protein (Putative RNA binding protein) (cDNA clone:001-031-A04, full insert sequence) (cDNA clone:006-307-B02, full insert sequence) (cDNA clone:J033051M06, full insert sequence) Q6Z568 Q6Z568_ORYSJ Os08g0412200 OsJ_27289 OSJNBa0007M04.13 OSNPB_080412200 ENOG411DPRG MTA O82486 MTA70_ARATH N6-adenosine-methyltransferase MT-A70-like (EC 2.1.1.62) (Protein EMBRYO DEFECTIVE 1706) DISRUPTION PHENOTYPE: Embryonic lethality: arrest at the globular stage of embryo development. Arrested seeds are deficient in mRNAs containing N6-methyladenosine (m6A). {ECO:0000269|PubMed:18505803}. Embryo lethal. Embryos arrest at globular stage.,Embryo lethal. Arrests at globular stage. Embryo defective; Globular-D. Meinke-2004 FUNCTION: Probable N6-methyltransferase that methylates adenosine residues of some mRNAs. N6-methyladenosine (m6A), which is present at internal sites of some mRNAs, may play a role in the efficiency of mRNA splicing, transport or translation. {ECO:0000269|PubMed:18505803}. R-ATH-72203; 2.1.1.62 76645 N6-adenosine-methyltransferase MT-A70-like (EC 2.1.1.62) (Protein EMBRYO DEFECTIVE 1706) chloroplast [GO:0009507]; MIS complex [GO:0036396]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity [GO:0016422]; RNA binding [GO:0003723]; mRNA methylation [GO:0080009]; RNA methylation [GO:0001510] locus:2132731; AT4G10760 N6-adenosine-methyltransferase MT-A70-like Probable N6-adenosine-methyltransferase MT-A70-like (EC 2.1.1.62) Q6EU10 MTA70_ORYSJ Os02g0672600 LOC_Os02g45110 OJ1197_E09.7 OJ1493_H11.20 FUNCTION: Probable N6-methyltransferase that methylates adenosine residues of some mRNAs. N6-methyladenosine (m6A), which is present at internal sites of some mRNAs, may play a role in the efficiency of mRNA splicing, transport or translation (By similarity). {ECO:0000250|UniProtKB:O82486}. ENOG411DPRD Q94BU4,Q67YS0,A0A1P8AVY6 Q94BU4_ARATH,Q67YS0_ARATH,A0A1P8AVY6_ARATH At1g33470/F10C21_14 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g33470),RNA-binding (RRM/RBD/RNP motifs) family protein 26106,26234,25814 At1g33470/F10C21_14 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g33470),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:2006998; AT1G33470 RNA recognition motif containing protein Os01g0876800 protein (Putative RRM-containing protein SEB-4) Q5N8W4 Q5N8W4_ORYSJ Os01g0876800 OsJ_04273 OSNPB_010876800 P0471B04.2 P0698A10.40 ENOG411DPRE RFS5 Q9FND9 RFS5_ARATH Probable galactinol--sucrose galactosyltransferase 5 (EC 2.4.1.82) (Protein SEED IMBIBITION 1-LIKE) (Raffinose synthase 5) DISRUPTION PHENOTYPE: Reduced drought tolerance, but no effect on freezing tolerance or on the ability to cold acclimation. {ECO:0000269|PubMed:15474032, ECO:0000269|Ref.4}. FUNCTION: Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers (By similarity). {ECO:0000250}. ARA:AT5G40390-MONOMER; 2.4.1.82; 2.4.1.82 86237 Probable galactinol--sucrose galactosyltransferase 5 (EC 2.4.1.82) (Protein SEED IMBIBITION 1-LIKE) (Raffinose synthase 5) chloroplast [GO:0009507]; galactinol-sucrose galactosyltransferase activity [GO:0047274]; carbohydrate metabolic process [GO:0005975]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979]; response to water deprivation [GO:0009414] locus:2170528; AT5G40390 galactinol--sucrose Galactinol--sucrose galactosyltransferase (EC 2.4.1.82) (Raffinose synthase),Os01g0170000 protein (Fragment) Q5VQG4,A0A0P0UYK7 RFS_ORYSJ,A0A0P0UYK7_ORYSJ RFS Os01g0170000 LOC_Os01g07530 OJ1276_B06.38 OsJ_00538 P0583G08.2,Os01g0170000 OSNPB_010170000 FUNCTION: Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers. Specific for galactinol and p-nitrophenyl-alpha-D-galactoside as galactosyl donors. Able to utilize sucrose, lactose, 4-beta-galactobiose, N-acetyl-D-lactosamine, trehalose and lacto-N-biose as acceptors. May also act as a glycoside hydrolase. {ECO:0000269|PubMed:17206375}. ENOG411DPRJ LRR-RLK,MEE6.25 C0LGH8,Q9FLL2,A0A1P8BG86,F4I233 Y1634_ARATH,Q9FLL2_ARATH,A0A1P8BG86_ARATH,F4I233_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 (EC 2.7.11.1),Leucine-rich repeat receptor-like protein kinase (Leucine-rich repeat transmembrane protein kinase family protein) (Receptor kinase-like protein),Leucine-rich repeat transmembrane protein kinase family protein,Leucine-rich repeat protein kinase family protein 2.7.11.1 73910,74328,61920,76746 Probable LRR receptor-like serine/threonine-protein kinase At1g63430 (EC 2.7.11.1),Leucine-rich repeat receptor-like protein kinase (Leucine-rich repeat transmembrane protein kinase family protein) (Receptor kinase-like protein),Leucine-rich repeat transmembrane protein kinase family protein,Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2163056;,locus:2031371; AT1G63430,AT5G41180 LRR receptor-like serine threonine-protein kinase Os04g0534200 protein,Os04g0534166 protein,Os04g0683600 protein (Fragment),Os04g0683600 protein Q0JBF9,A0A0P0WCR3,A0A0N7KJY4,A0A0P0WGW5 Q0JBF9_ORYSJ,A0A0P0WCR3_ORYSJ,A0A0N7KJY4_ORYSJ,A0A0P0WGW5_ORYSJ Os04g0534200 Os04g0534200 OSNPB_040534200,Os04g0534166 OSNPB_040534166,Os04g0683600 OSNPB_040683600 ENOG411DPRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein NB-ARC domain containing protein (Os11g0623800 protein),NB-ARC domain containing protein (Os11g0676800 protein),NB-ARC domain containing protein, expressed (Os11g0674400 protein),Os11g0673600 protein,Os11g0676200 protein (Fragment),Os11g0673900 protein,Os08g0258700 protein,Os11g0676500 protein,Os11g0676100 protein,Os11g0675200 protein,Os11g0677000 protein,Os11g0676050 protein,Os11g0677101 protein,Os09g0282840 protein,Os07g0449800 protein Q2R105,Q2QZQ9,Q2QZS0,A0A0P0Y5A8,A0A0P0Y5E8,A0A0P0Y594,A0A0P0XDM0,A0A0P0Y5H8,A0A0N7KTC3,A0A0P0Y589,A0A0P0Y5C8,A0A0P0Y576,A0A0P0Y5K1,A0A0P0XL98,A0A0P0X5W0 Q2R105_ORYSJ,Q2QZQ9_ORYSJ,Q2QZS0_ORYSJ,A0A0P0Y5A8_ORYSJ,A0A0P0Y5E8_ORYSJ,A0A0P0Y594_ORYSJ,A0A0P0XDM0_ORYSJ,A0A0P0Y5H8_ORYSJ,A0A0N7KTC3_ORYSJ,A0A0P0Y589_ORYSJ,A0A0P0Y5C8_ORYSJ,A0A0P0Y576_ORYSJ,A0A0P0Y5K1_ORYSJ,A0A0P0XL98_ORYSJ,A0A0P0X5W0_ORYSJ LOC_Os11g40780 Os11g0623800 OSNPB_110623800,Os11g0676800 LOC_Os11g45160 OsJ_02759 OSNPB_110676800,Os11g0674400 LOC_Os11g45050 OSNPB_110674400,Os11g0673600 OSNPB_110673600,Os11g0676200 OSNPB_110676200,Os11g0673900 OSNPB_110673900,Os08g0258700 OSNPB_080258700,Os11g0676500 OSNPB_110676500,Os11g0676100 OSNPB_110676100,Os11g0675200 OSNPB_110675200,Os11g0677000 OSNPB_110677000,Os11g0676050 OSNPB_110676050,Os11g0677101 OSNPB_110677101,Os09g0282840 OSNPB_090282840,Os07g0449800 OSNPB_070449800 ENOG411DPRH RPL5 O04603 RK5_ARATH 50S ribosomal protein L5, chloroplastic FUNCTION: Binds 5S rRNA, forms part of the central protuberance of the 50S subunit. {ECO:0000250}. 28344 50S ribosomal protein L5, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; response to cytokinin [GO:0009735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:2124978; AT4G01310 50S ribosomal protein L5 50S ribosomal protein L5, chloroplastic Q9ZST0 RK5_ORYSJ RPL5 Os03g0125000 LOC_Os03g03360 FUNCTION: Binds 5S rRNA, forms part of the central protuberance of the 50S subunit. {ECO:0000250}. ENOG411DPRI MXH1.10 Q8VYS9 Q8VYS9_ARATH EXS (ERD1/XPR1/SYG1) family protein (Uncharacterized protein At5g35730) 53562 EXS (ERD1/XPR1/SYG1) family protein (Uncharacterized protein At5g35730) cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] locus:2177251; AT5G35730 SPX and EXS domain-containing protein EXS family protein, putative, expressed (Os12g0595000 protein) (cDNA clone:J013002J09, full insert sequence) Q2QMQ9 Q2QMQ9_ORYSJ Os12g0595000 LOC_Os12g40340 OsJ_36728 OSNPB_120595000 ENOG411DPRN MAB16.20 F4K2Y3 F4K2Y3_ARATH Alpha/beta-Hydrolases superfamily protein 81306 Alpha/beta-Hydrolases superfamily protein chloroplast [GO:0009507]; cytosol [GO:0005829]; serine-type peptidase activity [GO:0008236] locus:2183587; AT5G36210 Dienelactone hydrolase family Os06g0215300 protein (Putative aminopeptidase C) (cDNA clone:J013050C22, full insert sequence) Q69Y12 Q69Y12_ORYSJ Os06g0215300 OsJ_20588 OSNPB_060215300 P0537F07.22 ENOG411DPRM Q9SUK9,Q9LVQ8 P2C55_ARATH,P2C80_ARATH Probable protein phosphatase 2C 55 (AtPP2C55) (EC 3.1.3.16),Probable protein phosphatase 2C 80 (AtPP2C80) (EC 3.1.3.16) 3.1.3.16 50297,43873 Probable protein phosphatase 2C 55 (AtPP2C55) (EC 3.1.3.16),Probable protein phosphatase 2C 80 (AtPP2C80) (EC 3.1.3.16) metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721] locus:2130834;,locus:2173679; AT4G16580,AT5G66720 protein phosphatase 2C 55-like 5-azacytidine resistance protein, putative, expressed (Expressed protein) (Os03g0809300 protein) Q6ATQ2 Q6ATQ2_ORYSJ OSJNBa0028F23.19 LOC_Os03g59470 Os03g0809300 OSNPB_030809300 ENOG411DPRR ADP-ribosylation factor B1B,ADP-ribosylation factor B1C,ARFB1C Q9LFJ7,Q9M9N1,A0A1I9LQI0 Q9LFJ7_ARATH,Q9M9N1_ARATH,A0A1I9LQI0_ARATH ADP-ribosylation factor B1B (ADP-ribosylation factor-like protein),ADP-ribosylation factor B1C (Putative ADP-ribosylation factor),ADP-ribosylation factor B1C 21833,21743,15812 ADP-ribosylation factor B1B (ADP-ribosylation factor-like protein),ADP-ribosylation factor B1C (Putative ADP-ribosylation factor),ADP-ribosylation factor B1C intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264] locus:2148141;,locus:2097725; AT5G17060,AT3G03120 ADP-ribosylation factor ADP-ribosylation factor, putative, expressed (Os10g0580200 protein) (Putative ADP-ribosylation factor) (cDNA clone:J013162J02, full insert sequence) (cDNA clone:J023044N16, full insert sequence),Os02g0699300 protein (cDNA clone:J013119O04, full insert sequence) Q336M3,Q0DYE5 Q336M3_ORYSJ,Q0DYE5_ORYSJ Os10g0580200 LOC_Os10g42940 Os10g0580200 OsJ_32607 OSJNBa0056G17.9 OSNPB_100580200,Os02g0699300 Os02g0699300 OSNPB_020699300 ENOG411DPRS Q9M031 Q9M031_ARATH Glutaredoxin family protein (Uncharacterized protein T10O8_130) 45307 Glutaredoxin family protein (Uncharacterized protein T10O8_130) cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2179157; AT5G01420 Glutaredoxin Glutaredoxin domain containing protein (Glutaredoxin family protein) (Os03g0648800 protein) Q60DI7 Q60DI7_ORYSJ Os03g0648800 LOC_Os03g44650 Os03g0648800 OSNPB_030648800 ENOG411DPRP Q94A65 STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic (Sulfurtransferase 14) (AtStr14) 24872 Rhodanese-like domain-containing protein 14, chloroplastic (Sulfurtransferase 14) (AtStr14) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535] locus:2137792; AT4G27700 Rhodanese-like domain containing protein Os09g0530000 protein (cDNA clone:001-046-A01, full insert sequence) (cDNA clone:J013111B10, full insert sequence) Q69NF7 Q69NF7_ORYSJ Os09g0530000 Os09g0530000 OJ1531_B07.22 OsJ_30096 OSNPB_090530000 ENOG411DPRQ PRP39 Q93ZR3,A0A1P8ATH2,F4I450,F4I448 Q93ZR3_ARATH,A0A1P8ATH2_ARATH,F4I450_ARATH,F4I448_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g04080),Tetratricopeptide repeat (TPR)-like superfamily protein Mutant plants are indistinguishable from WT except for a delay in time to flowering measured as the number of days to bolting and the total leaf numbers at flowering. On average the mutant plants flower 10 days and 44 days later than WT plants under long day and short day growth conditions respectively.,The mutant is responsive to a vernalization treatment the treated mutant plants flowering earlier than mutant plants not subjected to the vernalizaiton treatment.,The mutant plants treated with GA flowered earlier than the at prp39-1-1 plants without GA treatment and at similar times as wild-type plants without GA treatment. 85242,60958,64942,91152 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g04080),Tetratricopeptide repeat (TPR)-like superfamily protein RNA processing [GO:0006396],commitment complex [GO:0000243]; cytosol [GO:0005829]; U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; mRNA 5'-splice site recognition [GO:0000395]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510] locus:2020265; AT1G04080 pre-mRNA-processing factor Os03g0210400 protein (Pre-mRNA processing protein prp39, putative, expressed) Q10Q44 Q10Q44_ORYSJ LOC_Os03g11200 Os03g0210400 OSNPB_030210400 ENOG411DPRV O82346,A8MRJ0,F4HP91 O82346_ARATH,A8MRJ0_ARATH,F4HP91_ARATH At2g46230/T3F17.12 (Expressed protein) (PIN domain-like family protein),PIN domain-like family protein R-ATH-6791226; 22472,20756,20603 At2g46230/T3F17.12 (Expressed protein) (PIN domain-like family protein),PIN domain-like family protein nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462],small-subunit processome [GO:0032040] locus:2062902;,locus:2197885; AT2G46230,AT1G26530 rRNA-processing protein FCF1 homolog Os06g0158600 protein (Putative FCF1 small subunit) (cDNA clone:006-212-G11, full insert sequence) (cDNA clone:J033036C08, full insert sequence) Q5VMX2 Q5VMX2_ORYSJ KMK0024M20.35 Os06g0158600 OsJ_20200 OSNPB_060158600 P0702F05.21 ENOG411DPRW Q9ZPI1,F4J7V2 SYKC_ARATH,F4J7V2_ARATH Lysine--tRNA ligase, cytoplasmic (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS) (Lysyl-tRNA synthetase 1) (AtKRS-1),Class II aminoacyl-tRNA and biotin synthetases superfamily protein FUNCTION: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA (By similarity). Promotes aminoacylation of non-cognate tRNAs and translational recoding of lysine at nonsense codons (PubMed:17425721). {ECO:0000250|UniProtKB:Q15046, ECO:0000269|PubMed:17425721}. ARA:AT3G11710-MONOMER; 6.1.1.6 70888,18593 Lysine--tRNA ligase, cytoplasmic (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS) (Lysyl-tRNA synthetase 1) (AtKRS-1),Class II aminoacyl-tRNA and biotin synthetases superfamily protein cytosol [GO:0005829]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; lysine-tRNA ligase activity [GO:0004824]; metal ion binding [GO:0046872]; lysyl-tRNA aminoacylation [GO:0006430],aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; tRNA aminoacylation for protein translation [GO:0006418] locus:2098348;,locus:2829176; AT3G11710,AT3G30805 lysyl-trna synthetase Lysine--tRNA ligase (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS) Q6F2U9 SYK_ORYSJ Os03g0586800 LOC_Os03g38980 OSJNBa0010D22.26 ENOG411DPRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os01g0908600 protein (Proline transport protein-like) (Putative betaine/proline transporter) (cDNA, clone: J065200A10, full insert sequence) Q8L431 Q8L431_ORYSJ P0497A05.18 Os01g0908600 B1417F08.37 OsJ_04479 OSNPB_010908600 P0456E05.10 ENOG411DPRZ Q8RWP0 Q8RWP0_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At3g20790) 38578 NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At3g20790) cytosol [GO:0005829]; oxidoreductase activity [GO:0016491] locus:2091926; AT3G20790 Oxidoreductase family NAD-binding Rossmann fold Os09g0280300 protein (cDNA clone:J033030J06, full insert sequence) Q6H436 Q6H436_ORYSJ Os09g0280300 Os09g0280300 OSNPB_090280300 P0651G05.14 ENOG411DPRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0541000 protein (Putative serine/threonine kinase protein),Os07g0537000 protein (Putative serine/threonine kinase receptor),Os07g0540600 protein,Os07g0541200 protein Q84S65,Q7F1L6,Q0D5R7,A0A0P0X777 Q84S65_ORYSJ,Q7F1L6_ORYSJ,Q0D5R7_ORYSJ,A0A0P0X777_ORYSJ P0458H05.127 OJ1008_E09.110 Os07g0541000 OSNPB_070541000,OJ1058_A12.133-1 Os07g0537000 OsJ_24574 OSNPB_070537000,Os07g0540600 Os07g0540600 OSNPB_070540600,Os07g0541200 OSNPB_070541200 ENOG411E6P7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0539200 protein (cDNA clone:002-154-F09, full insert sequence),Os12g0626150 protein Q84QL9,A0A0P0YCW8 Q84QL9_ORYSJ,A0A0P0YCW8_ORYSJ P0666G10.109 Os08g0539200 OsJ_28111 OSNPB_080539200,Os12g0626150 OSNPB_120626150 ENOG411E6P9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os08g0521600 protein (cDNA clone:002-140-D07, full insert sequence) Q84QR5 Q84QR5_ORYSJ OJ1081_B12.108 Os08g0521600 OJ1003_A09.37 OSNPB_080521600 ENOG411E6PI LBD2 Q9LNB9 LBD2_ARATH LOB domain-containing protein 2 (ASYMMETRIC LEAVES 2-like protein 32) (AS2-like protein 32) 23416 LOB domain-containing protein 2 (ASYMMETRIC LEAVES 2-like protein 32) (AS2-like protein 32) locus:2038530; AT1G06280 Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E6PM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6PW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger double-stranded RNA-binding Os09g0421800 protein C7J6K5 C7J6K5_ORYSJ Os09g0421800 OSNPB_090421800 ENOG411E6PV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) NA NA NA NA NA NA NA ENOG411E10U B3H6Y0,Q67Z75,A0A1P8AWS9,A8MRK8,A0A1I9LND2,F4J341 B3H6Y0_ARATH,Q67Z75_ARATH,A0A1P8AWS9_ARATH,A8MRK8_ARATH,A0A1I9LND2_ARATH,F4J341_ARATH Alpha/beta-Hydrolases superfamily protein (At1g08310),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At3g44510),Alpha/beta-Hydrolases superfamily protein 36388,25154,28430,36811,27324,37154 Alpha/beta-Hydrolases superfamily protein (At1g08310),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At3g44510),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2199958;,locus:2075998; AT1G08310,AT3G44510 NA NA NA NA NA NA NA NA ENOG411E3GY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D6-type cyclinPredicted protein source NA NA NA NA NA NA NA ENOG411E3GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily NA NA NA NA NA NA NA ENOG411E3GP PSAO Q949Q5 PSAO_ARATH Photosystem I subunit O (PSI-O) DISRUPTION PHENOTYPE: Reduction by 50 percent in state transitions due to a disturbed balancing of excitation energy between the two photosystems. Short flowering delay. {ECO:0000269|PubMed:15169790}. FUNCTION: Involved in the balancing of excitation energy between the two photosystems I (PSI) and II (PSII). {ECO:0000269|PubMed:11801243, ECO:0000269|PubMed:15169790}. MetaCyc:AT1G08380-MONOMER; 15144 Photosystem I subunit O (PSI-O) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; thylakoid [GO:0009579]; photosynthesis, light harvesting in photosystem I [GO:0009768]; photosynthetic electron transport chain [GO:0009767] locus:2201836; AT1G08380 photosystem i OJ991214_12.3 protein (Os04g0414700 protein) (cDNA clone:001-004-G12, full insert sequence) Q7XTG4 Q7XTG4_ORYSJ Os04g0414700 Os04g0414700 OJ991214_12.3 OsJ_14748 OSNPB_040414700 ENOG411E3GS F27K19_190 Q9LY44 Q9LY44_ARATH Transmembrane protein (Uncharacterized protein At3g56010) (Uncharacterized protein F27K19_190) 21921 Transmembrane protein (Uncharacterized protein At3g56010) (Uncharacterized protein F27K19_190) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2082088; AT3G56010 NA Os03g0293100 protein Q0DSR5 Q0DSR5_ORYSJ Os03g0293100 Os03g0293100 OsJ_10461 OSNPB_030293100 ENOG411E3GU MSD23.3 Q9LUK5,F4KIV8,F4KIW0 Q9LUK5_ARATH,F4KIV8_ARATH,F4KIW0_ARATH Phosphatidylinositol-glycan biosynthesis class X-like protein 33703,36844,33891 Phosphatidylinositol-glycan biosynthesis class X-like protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; GPI anchor biosynthetic process [GO:0006506] locus:2172942; AT5G46850 PIG-X / PBN1 (RAP Annotation release2) Conserved hypothetical protein (Expressed protein) (Os12g0596900 protein) Q2QMP3 Q2QMP3_ORYSJ LOC_Os12g40500 Os12g0596900 OsJ_36744 OSNPB_120596900 ENOG411E3GI SOT18,SOT16,SOT17 Q9C9C9,Q9C9D0,Q9FZ80 SOT18_ARATH,SOT16_ARATH,SOT17_ARATH Cytosolic sulfotransferase 18 (AtSOT18) (EC 2.8.2.-) (Desulfo-glucosinolate sulfotransferase B) (Sulfotransferase 5B) (AtST5b),Cytosolic sulfotransferase 16 (AtSOT16) (EC 2.8.2.-) (Desulfoglucosinolate sulfotransferase A) (AtST5a) (Protein CORONATINE INDUCED 7),Cytosolic sulfotransferase 17 (AtSOT17) (EC 2.8.2.-) (Desulfoglucosinolate sulfotransferase C) (AtST5c) FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of desulfo-glucosinolates (dsGSs), the final step in the biosynthesis of the glucosinolate core structure. Preferred substrate are the long-chain desulfo-glucosinolates, 7-methylthioheptyl and 8-methylthiooctyl, derived from methionine. Substrate preference is desulfo-benzyl glucosinolate > desulfo-4-methylthiobutyl glucosinolate > desulfo-6-methylthiohexyl glucosinolate > desulfo-3-methylthiopropyl glucosinolate > desulfo-indol-3-yl methyl glucosinolate > desulfo-singrin > desulfo-3-butenyl glucosinolate. {ECO:0000269|PubMed:15358770, ECO:0000269|PubMed:15866872, ECO:0000269|PubMed:16367753, ECO:0000269|PubMed:19077143, ECO:0000269|PubMed:21281472}.,FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of desulfo-glucosinolates (dsGSs), the final step in the biosynthesis of the glucosinolate core structure. Substrate preference is desulfo-2-phenylethyl glucosinolate > desulfo-indol-3-yl methyl glucosinolate > desulfo-benzyl glucosinolate > desulfo-6-methylthiohexyl glucosinolate > desulfo-4-methylthiobutyl glucosinolate > desulfo-3-methylthiopropyl glucosinolate > desulfo-singrin > desulfo-3-butenyl glucosinolate. {ECO:0000269|PubMed:15358770, ECO:0000269|PubMed:15866872, ECO:0000269|PubMed:16367753, ECO:0000269|PubMed:19077143, ECO:0000269|PubMed:21281472}.,FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of desulfo-glucosinolates (dsGSs), the final step in the biosynthesis of the glucosinolate core structure. Substrate preference is desulfo-benzyl glucosinolate > desulfo-6-methylthiohexyl glucosinolate. Increased specific activity with increasing chain length of desulfo-glucosinolate derived from methionine. Preferred substrate is desulfo-8-methylthiooctyl glucosinolate. {ECO:0000269|PubMed:15358770, ECO:0000269|PubMed:15866872, ECO:0000269|PubMed:16367753, ECO:0000269|PubMed:19077143, ECO:0000269|PubMed:21281472}. MISCELLANEOUS: Strong differences in the kinetic behavior between the same protein from different cultivars. MetaCyc:AT1G74090-MONOMER;,MetaCyc:AT1G74100-MONOMER;,MetaCyc:AT1G18590-MONOMER; R-ATH-156584; 2.8.2.24; 2.8.2.- 40465,39219,39912 Cytosolic sulfotransferase 18 (AtSOT18) (EC 2.8.2.-) (Desulfo-glucosinolate sulfotransferase B) (Sulfotransferase 5B) (AtST5b),Cytosolic sulfotransferase 16 (AtSOT16) (EC 2.8.2.-) (Desulfoglucosinolate sulfotransferase A) (AtST5a) (Protein CORONATINE INDUCED 7),Cytosolic sulfotransferase 17 (AtSOT17) (EC 2.8.2.-) (Desulfoglucosinolate sulfotransferase C) (AtST5c) cytoplasm [GO:0005737]; 3-methylthiopropyl-desulfoglucosinolate sulfotransferase activity [GO:0080066]; 4-methylthiobutyl-desulfoglucosinolate sulfotransferase activity [GO:0080067]; 5-methylthiopentyl-desulfoglucosinolate sulfotransferase activity [GO:0080068]; 7-methylthioheptyl-desulfoglucosinolate sulfotransferase activity [GO:0080069]; 8-methylthiooctyl-desulfoglucosinolate sulfotransferase activity [GO:0080070]; desulfoglucosinolate sulfotransferase activity [GO:0047364]; indol-3-yl-methyl-desulfoglucosinolate sulfotransferase activity [GO:0080071]; glucosinolate biosynthetic process [GO:0019761],cytoplasm [GO:0005737]; desulfoglucosinolate sulfotransferase activity [GO:0047364]; glucosinolate biosynthetic process [GO:0019761]; response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance [GO:0032260],cytoplasm [GO:0005737]; desulfoglucosinolate sulfotransferase activity [GO:0047364]; glucosinolate biosynthetic process [GO:0019761] DEVELOPMENTAL STAGE: Low expression in young plants (up to 4 weeks), then slight increase in older plants. {ECO:0000269|PubMed:16367753}.,DEVELOPMENTAL STAGE: Expression reaching a maximum in 2-week-old plants and a minimum in flowering plants. {ECO:0000269|PubMed:16367753}. TISSUE SPECIFICITY: Expressed in roots, leaves and stems. Barely detected in siliques and flowers. {ECO:0000269|PubMed:16367753}.,TISSUE SPECIFICITY: Highly expressed in roots, stems and mature leaves. Low expression in young leaves and flowers. Barely detected in siliques. {ECO:0000269|PubMed:16367753}. locus:2031516;,locus:2031501;,locus:2027458; AT1G74090,AT1G74100,AT1G18590 Sulfotransferase domain NA NA NA NA NA NA NA ENOG411E3GH Q8GRX2,Q9C8D8 Q8GRX2_ARATH,Q9C8D8_ARATH Eukaryotic translation initiation factor 3 subunit J (eIF3j) FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03009}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 25168,25507 Eukaryotic translation initiation factor 3 subunit J (eIF3j) cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; plasmodesma [GO:0009506]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446],eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; membrane [GO:0016020]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446] locus:2832875;,locus:2013830; AT5G37475,AT1G66070 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit J (eIF3j),Os05g0496100 protein Q6Z730,Q65X67 Q6Z730_ORYSJ,Q65X67_ORYSJ Os02g0122300 OsJ_05177 OSNPB_020122300 P0575F10.1,Os05g0496100 OJ1579_G03.16 OsJ_19057 OSNPB_050496100 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03009}. ENOG411E3GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb protein Os06g0205100 protein (Fragment) A0A0P0WUA3 A0A0P0WUA3_ORYSJ Os06g0205100 OSNPB_060205100 ENOG411E3GD F4JEI7 F4JEI7_ARATH SMAD/FHA domain-containing protein 35023 SMAD/FHA domain-containing protein locus:2091576; AT3G13780 NA Os06g0565300 protein A0A0P0WYA3 A0A0P0WYA3_ORYSJ Os06g0565300 OSNPB_060565300 ENOG411E3GF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2-aminoethanethiol Os09g0471000 protein (cDNA clone:J033134B11, full insert sequence),Os09g0471000 protein (Fragment) B7EUY2,A0A0N7KQZ0 B7EUY2_ORYSJ,A0A0N7KQZ0_ORYSJ Os09g0471000 OSNPB_090471000 ENOG411E3G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0465500 protein Q6YXI2 Q6YXI2_ORYSJ Os09g0465500 OJ1005_D12.16 OSNPB_090465500 ENOG411E3G8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium sulfate NA NA NA NA NA NA NA ENOG411E3G3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase Os01g0138300 protein A0A0P0UXY2 A0A0P0UXY2_ORYSJ Os01g0138300 OSNPB_010138300 ENOG411E3G2 ALT2,ALT4,ALT3,ALT1,acyl-lipid thioesterase 2 Q9C7I8,F4HX80,Q8W583,Q9C7I5,A0A1P8AM78,A0A1P8AM64 ALT2_ARATH,ALT4_ARATH,ALT3_ARATH,ALT1_ARATH,A0A1P8AM78_ARATH,A0A1P8AM64_ARATH Acyl-acyl carrier protein thioesterase ATL2, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL2) (Acyl-lipid thioesterase 2),Acyl-acyl carrier protein thioesterase ATL4, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL4) (Acyl-lipid thioesterase 4),Acyl-acyl carrier protein thioesterase ATL3, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL3) (Acyl-lipid thioesterase 3),Acyl-acyl carrier protein thioesterase ATL1, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL1) (Acyl-lipid thioesterase 1),Thioesterase superfamily protein FUNCTION: Acyl-ACP thioesterase involved in the production of fatty acids and beta-keto fatty acids. Can produce beta-keto fatty acids of medium chain (8:0 and 10:0) and small amounts of 8:0 fatty acid when expressed in a heterologous organism (E.coli). May play a role in suberin biosynthesis. {ECO:0000269|PubMed:24214063}.,FUNCTION: Acyl-ACP thioesterase involved in the production of fatty acids and beta-keto fatty acids. Can produce fatty acids of medium to long chain (6:0, 8:0, 10:0 and 16:1) and small amounts of medium to long chain beta-keto fatty acids (8:0, 14:0 and 16:1) when expressed in a heterologous organism (E.coli). Possesses thioesterase activity for lauroyl-ACP (12:0-ACP) in vitro. May play a role in the development of floral organs by generating short chain fatty acids. {ECO:0000269|PubMed:24214063}.,FUNCTION: Acyl-ACP thioesterase involved in the production of fatty acids and beta-keto fatty acids. Can produce fatty acids of long chain (14:1 and 16:1) and beta-keto fatty acids of medium to long chain (8:0, 10:0, 12:0, 12:1, 14:0 and 16:0) when expressed in a heterologous organism (E.coli). Possesses thioesterase activity for lauroyl-ACP (12:0-ACP) in vitro. May play a role in the generation of long fatty acids in the chloroplast. {ECO:0000269|PubMed:24214063}.,FUNCTION: Acyl-ACP thioesterase involved in the production of fatty acids and beta-keto fatty acids. Can produce fatty acids of medium to long chain (12:0, 14:1, 14:0, 16:1 and 16:0) when expressed in a heterologous organism (E.coli). Possesses thioesterase activity toward lauroyl-ACP (12:0-ACP) in vitro. May play a role in cuticular wax synthesis. {ECO:0000269|PubMed:24214063}. ARA:AT1G68280-MONOMER;,ARA:AT1G68260-MONOMER; 3.1.2.- 21325,21318,21540,21500,14801,18616 Acyl-acyl carrier protein thioesterase ATL2, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL2) (Acyl-lipid thioesterase 2),Acyl-acyl carrier protein thioesterase ATL4, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL4) (Acyl-lipid thioesterase 4),Acyl-acyl carrier protein thioesterase ATL3, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL3) (Acyl-lipid thioesterase 3),Acyl-acyl carrier protein thioesterase ATL1, chloroplastic (EC 3.1.2.-) (Acyl-ACP thioesterase ATL1) (Acyl-lipid thioesterase 1),Thioesterase superfamily protein chloroplast [GO:0009507]; acyl-[acyl-carrier-protein] hydrolase activity [GO:0016297]; lipid metabolic process [GO:0006629],chloroplast [GO:0009507]; acyl-[acyl-carrier-protein] hydrolase activity [GO:0016297]; dodecanoyl-[acyl-carrier-protein] hydrolase activity [GO:0047381]; lipid metabolic process [GO:0006629],chloroplast [GO:0009507]; dodecanoyl-[acyl-carrier-protein] hydrolase activity [GO:0047381]; myristoyl-[acyl-carrier-protein] hydrolase activity [GO:0016295]; palmitoyl-[acyl-carrier-protein] hydrolase activity [GO:0016296]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in endodermal and peridermal cells in young and mature roots, in boundaries of stem lateral organs and developing seeds. {ECO:0000269|PubMed:24214063}.,TISSUE SPECIFICITY: Expressed specifically in anther walls (endothecium) and in microspores. {ECO:0000269|PubMed:24214063}.,TISSUE SPECIFICITY: Highly expressed in stems and flowers and at lower levels in rosette leaves, cauline leaves and siliques. {ECO:0000269|PubMed:24214063}.,TISSUE SPECIFICITY: Expressed in epidermal cells of stems, in the top portion of the gynoecium, petals and trichomes. {ECO:0000269|PubMed:24214063}. locus:2206727;,locus:2199312;,locus:2199277;,locus:2206752; AT1G35250,AT1G68280,AT1G68260,AT1G35290 Methylketone synthase Os04g0553300 protein (cDNA, clone: J065037L06, full insert sequence) B7F8F8 B7F8F8_ORYSJ Os04g0553300 OSNPB_040553300 ENOG411E3G5 Q9XIH1,B3H5I1 Q9XIH1_ARATH,B3H5I1_ARATH Uncharacterized protein At2g16190,Uncharacterized protein 34237,31062 Uncharacterized protein At2g16190,Uncharacterized protein locus:2052961; AT2G16190 NA Os01g0693100 protein A0A0P0V6V1 A0A0P0V6V1_ORYSJ Os01g0693100 OSNPB_010693100 ENOG411E1BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF623 domain containing protein expressed Os10g0532600 protein Q8LN40 Q8LN40_ORYSJ Os10g0532600 LOC_Os10g38880 Os10g0532600 OSJNBa0053C23.19 OSNPB_100532600 ENOG411E1BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like Os04g0388700 protein A0A0P0W9M4,A0A0P0W9G2 A0A0P0W9M4_ORYSJ,A0A0P0W9G2_ORYSJ Os04g0388700 OSNPB_040388700 ENOG411E1B6 F4JI72 F4JI72_ARATH Homeodomain-like superfamily protein retarded growth. deficiency in plant fructification (reduced fresh weight of fruits and reduced number of seeds per fruit). 56824 Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2125492; AT4G03250 homeobox-leucine zipper family protein NA NA NA NA NA NA NA ENOG411E1B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EAP8 NPF8.4,PTR4 Q84WG0,F4IPF3 PTR26_ARATH,F4IPF3_ARATH Protein NRT1/ PTR FAMILY 8.4 (AtNPF8.4) (Peptide transporter PTR4),Major facilitator superfamily protein R-ATH-427975;R-ATH-6798695; 3.6.3.43; 60880,58722 Protein NRT1/ PTR FAMILY 8.4 (AtNPF8.4) (Peptide transporter PTR4),Major facilitator superfamily protein integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:17481610}. locus:2041140; AT2G02020 POT family NA NA NA NA NA NA NA ENOG411EAP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HECTc NA NA NA NA NA NA NA ENOG411EAP6 MBK20.5 Q9FLR9,Q501C1,F4K3J7 Q9FLR9_ARATH,Q501C1_ARATH,F4K3J7_ARATH Protein kinase superfamily protein (Similarity to receptor-like protein kinase),At5g61570 (Protein kinase superfamily protein),Protein kinase superfamily protein 40159,39960,40246 Protein kinase superfamily protein (Similarity to receptor-like protein kinase),At5g61570 (Protein kinase superfamily protein),Protein kinase superfamily protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2160344;,locus:2151651; AT5G07620,AT5G61570 STYKc NA NA NA NA NA NA NA ENOG411EAP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAP4 PIL1 Q8L5W8,A0A1P8AXC9,A0A1P8AXH8 PIL1_ARATH,A0A1P8AXC9_ARATH,A0A1P8AXH8_ARATH Transcription factor PIL1 (Basic helix-loop-helix protein 124) (AtbHLH124) (bHLH 124) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 1) (Transcription factor EN 110) (bHLH transcription factor bHLH124),Phytochrome interacting factor 3-like 1 As in the La-er ecotype (mutant background Col) a single exposure of knockout mutant seedlings to 2 h of low R/FR at subjective dusk is sufficient to induce a significant promotion of hypocotyl elongation whereas a similar treatment at subjective dawn leads to an inhibition of elongation.,Mutant seedlings exhibit a significant shift (~6 h) in the phase of the circadian rhythm of hypocotyl elongation responses to low R/FR.,The mutant seedlings display a marked attenuation of the maximal promotion of elongation by transient low R/FR and an increase in the magnitude of the growth inhibition caused by transient low R/FR at subjective dawn.,The circadian-associated phenotypes including flowering time and red light sensitivity during early photomorphogenesis (i.e. elongation of hypocotyls) are identical between wild type and mutant.,Under FRc conditions the length mutant hypocotyls is increased compared to that of wild-type plants. Under Rc conditions the hypocotyl length is also increased and the cotyledon area is smaller. Abnormal hypocotyl length and cotyledon size under red and far-red light-P. Quail-2006 FUNCTION: Transcription factor. Involved in responses to transient and long-term shade. Required for the light-mediated inhibition of hypocotyl elongation. Necessary for rapid light-induced expression of the photomorphogenesis- and circadian-related gene APRR9. Seems to play a role in multiple PHYB responses, such as flowering transition and petiole elongation. {ECO:0000269|PubMed:14668869, ECO:0000269|PubMed:16565297, ECO:0000269|PubMed:16891401}. 46580,43203,44310 Transcription factor PIL1 (Basic helix-loop-helix protein 124) (AtbHLH124) (bHLH 124) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 1) (Transcription factor EN 110) (bHLH transcription factor bHLH124),Phytochrome interacting factor 3-like 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; red or far-red light signaling pathway [GO:0010017]; regulation of transcription, DNA-templated [GO:0006355]; shade avoidance [GO:0009641]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Etiolated seedlings. {ECO:0000269|PubMed:12826627}. locus:2041369; AT2G46970 phytochrome interacting factor 3-like 1 NA NA NA NA NA NA NA ENOG411EAP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRAF-type zinc finger family protein Os04g0217900 protein (Fragment) A0A0P0W7G3 A0A0P0W7G3_ORYSJ Os04g0217900 OSNPB_040217900 ENOG411EAP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411EAP3 WRKY19 Q9SZ67,B3H4T8,A0A1P8B8D4,A0A1P8B8E0,A0A1P8B8G5,A0A1P8B8D3,F4JPV9,A0A1P8B8D2,A0A1P8B8F0 WRK19_ARATH,B3H4T8_ARATH,A0A1P8B8D4_ARATH,A0A1P8B8E0_ARATH,A0A1P8B8G5_ARATH,A0A1P8B8D3_ARATH,F4JPV9_ARATH,A0A1P8B8D2_ARATH,A0A1P8B8F0_ARATH Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19),Protein kinase family protein FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity (By similarity). {ECO:0000250}. 210322,199996,196418,199115,207392,209441,208273,202521,140265 Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19),Protein kinase family protein chloroplast envelope [GO:0009941]; nucleus [GO:0005634]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ADP binding [GO:0043531]; kinase activity [GO:0016301]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351] locus:2118116; AT4G12020 Transcription factor NA NA NA NA NA NA NA ENOG411EAP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-activating enzyme e1 C-terminal domain Os03g0294900 protein (Fragment) A0A0N7KH34 A0A0N7KH34_ORYSJ Os03g0294900 OSNPB_030294900 ENOG411EAP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os09g0242300 protein B9G290 B9G290_ORYSJ Os09g0242300 OsJ_28482 OSNPB_090242300 ENOG411EAPJ CYP71B7,CYP71B29 Q96514,Q9SAE4 C71B7_ARATH,C71BT_ARATH Cytochrome P450 71B7 (EC 1.14.-.-),Cytochrome P450 71B29 (EC 1.14.-.-) ARA:AT1G13110-MONOMER;,ARA:AT1G13100-MONOMER; 1.14.-.- 57209,56005 Cytochrome P450 71B7 (EC 1.14.-.-),Cytochrome P450 71B29 (EC 1.14.-.-) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] TISSUE SPECIFICITY: Highly expressed in rosette leaves. Also expressed in roots, leaves, flowers, and siliques. locus:2031820;,locus:2031805; AT1G13110,AT1G13100 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EAPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os08g0105800 protein (Putative cytochrome P450),Os08g0105800 protein (Putative cytochrome P450 71C4) (cDNA clone:J013097P19, full insert sequence),Os01g0544200 protein (Putative P450) (cDNA clone:J013160F05, full insert sequence),Os01g0543600 protein Q6ZD82,Q6ZD83,Q5JKB8,A0A0P0V3S5 Q6ZD82_ORYSJ,Q6ZD83_ORYSJ,Q5JKB8_ORYSJ,A0A0P0V3S5_ORYSJ P0450B04.3-2 OJ1300_E01.18-2 Os08g0105800 OSNPB_080105800,P0450B04.3-1 OJ1300_E01.18-1 Os08g0105800 OsJ_25752 OSNPB_080105800,Os01g0544200 OsJ_01155 OSJNBa0051H17.18-1 OSNPB_010544200,Os01g0543600 OSNPB_010543600 ENOG411EAPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain NA NA NA NA NA NA NA ENOG411EAPI BPC5 F4JUI3 BPC5_ARATH Protein BASIC PENTACYSTEINE5 (AtBPC5) (GAGA-motif binding transcriptional activator BBR/BPC5) FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. 31776 Protein BASIC PENTACYSTEINE5 (AtBPC5) (GAGA-motif binding transcriptional activator BBR/BPC5) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}. locus:2120227; AT4G38910 GAGA binding protein-like family NA NA NA NA NA NA NA ENOG411EAPF PERK6 Q9LS95 PERK6_ARATH Putative proline-rich receptor-like protein kinase PERK6 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 6) (AtPERK6) 2.7.11.1 74687 Putative proline-rich receptor-like protein kinase PERK6 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 6) (AtPERK6) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Mostly expressed in flower buds. {ECO:0000269|PubMed:15653807}. locus:2093999; AT3G18810 STYKc NA NA NA NA NA NA NA ENOG411EAPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os03g0397700 protein A0A0P0VYC3,A0A0N7KHE3 A0A0P0VYC3_ORYSJ,A0A0N7KHE3_ORYSJ Os03g0397700 OSNPB_030397700 ENOG411EAPE EGM1 Q9SXB4,Q9SXB5,A0A1P8ASF1 Y1130_ARATH,Y1135_ARATH,A0A1P8ASF1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g11303 (EC 2.7.11.1),G-type lectin S-receptor-like Serine/Threonine-kinase 2.7.11.1 91542,91651,89923 G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g11303 (EC 2.7.11.1),G-type lectin S-receptor-like Serine/Threonine-kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] AT1G11300,AT1G11303 PAN_AP NA NA NA NA NA NA NA ENOG411EAPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os08g0126800 protein,Os08g0126400 protein,Os08g0126900 protein,Os08g0126500 protein (cDNA clone:002-173-G11, full insert sequence) Q6ZK56,Q6ZK59,Q6ZK55,Q6ZK58 Q6ZK56_ORYSJ,Q6ZK59_ORYSJ,Q6ZK55_ORYSJ,Q6ZK58_ORYSJ OJ1163_G08.19 Os08g0126800 OSNPB_080126800,OJ1163_G08.16 Os08g0126400 OSNPB_080126400,Os08g0126900 OJ1163_G08.20 OsJ_25896 OSNPB_080126900,Os08g0126500 OJ1163_G08.17 OSNPB_080126500 ENOG411EAPY DOF2.2 Q9ZV33,F4IJM6 DOF22_ARATH,F4IJM6_ARATH Dof zinc finger protein DOF2.2 (AtDOF2.2),Dof-type zinc finger DNA-binding family protein FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 36647,34745 Dof zinc finger protein DOF2.2 (AtDOF2.2),Dof-type zinc finger DNA-binding family protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:2053175; AT2G28810 zinc finger NA NA NA NA NA NA NA ENOG411EAPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411EG82 ARF70 Q9ZV39,Q8RV83,Q6DSS2 Y2881_ARATH,Y2172_ARATH,Y2186_ARATH Putative B3 domain-containing protein At2g18810,B3 domain-containing protein At2g31720 (Protein AUXIN RESPONSE FACTOR 70),B3 domain-containing protein At2g31862 26637,35844,19624 Putative B3 domain-containing protein At2g18810,B3 domain-containing protein At2g31720 (Protein AUXIN RESPONSE FACTOR 70),B3 domain-containing protein At2g31862 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2044475;,locus:2065918;,locus:1006230033; AT2G18810,AT2G31720,AT2G31862 DNA binding NA NA NA NA NA NA NA ENOG411EG85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0113201 protein (Fragment),Os04g0447533 protein (Fragment),Os04g0447566 protein (Fragment),Os04g0447650 protein (Fragment),Os10g0113050 protein (Fragment),Os04g0167851 protein (Fragment),Os03g0237201 protein A0A0P0XRG4,A0A0P0WB00,A0A0N7KJ48,A0A0P0WAP1,A0A0P0XRG1,A0A0P0W6T9,A0A0P0VV60 A0A0P0XRG4_ORYSJ,A0A0P0WB00_ORYSJ,A0A0N7KJ48_ORYSJ,A0A0P0WAP1_ORYSJ,A0A0P0XRG1_ORYSJ,A0A0P0W6T9_ORYSJ,A0A0P0VV60_ORYSJ Os10g0113201 OSNPB_100113201,Os04g0447533 OSNPB_040447533,Os04g0447566 OSNPB_040447566,Os04g0447650 OSNPB_040447650,Os10g0113050 OSNPB_100113050,Os04g0167851 OSNPB_040167851,Os03g0237201 OSNPB_030237201 ENOG411EG8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EG8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EG8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EG8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein kinase kinase kinase NA NA NA NA NA NA NA ENOG411EG8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues Non-specific lipid-transfer protein 3 (LTP 3) Q2QYL3 NLTP3_ORYSJ LTP110-A Os11g0115100 LOC_Os11g02350 OsJ_031413; LTP110-B Os12g0114800 LOC_Os12g02300 FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. May possess an antifungal activity and protect the plant against pathogens. {ECO:0000269|PubMed:14659081}. ENOG411EG8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tyrosine phosphatase family NA NA NA NA NA NA NA ENOG411EG8R F4JW68 F4JW68_ARATH Uncharacterized protein 14104 Uncharacterized protein locus:504955245; AT4G39795 Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411EG8S MYC6.14,MYC6.13,MYC6.15 Q6AWX4,Q9FN57,Q9FN58,Q9FN56 Q6AWX4_ARATH,Q9FN57_ARATH,Q9FN58_ARATH,Q9FN56_ARATH At1g51930 (RING/U-box superfamily protein),Emb|CAB89405.1 (RING/U-box superfamily protein),RING/U-box superfamily protein,RING/U-box superfamily protein (Zinc finger (C3HC4-type RING finger) family protein) 14933,14048,18350,19139 At1g51930 (RING/U-box superfamily protein),Emb|CAB89405.1 (RING/U-box superfamily protein),RING/U-box superfamily protein,RING/U-box superfamily protein (Zinc finger (C3HC4-type RING finger) family protein) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2195871;,locus:2177876;,locus:2177866;,locus:2177886; AT1G51930,AT5G41440,AT5G41430,AT5G41450 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EG8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8U RGF4 Q9LI64,F4J5G8 RGF4_ARATH,F4J5G8_ARATH Root meristem growth factor 4 (AtRGF4),Root meristem growth factor-like protein FUNCTION: Maintains the postembryonic root stem cell niche. {ECO:0000269|PubMed:20798316}. 18735,20793 Root meristem growth factor 4 (AtRGF4),Root meristem growth factor-like protein extracellular space [GO:0005615]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; positive regulation of cell proliferation [GO:0008284],positive gravitropism [GO:0009958]; regulation of auxin polar transport [GO:2000012]; regulation of protein localization [GO:0032880] locus:2102891; AT3G30350 NA NA NA NA NA NA NA NA ENOG411EG8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os03g0400500 protein A0A0P0VYG3 A0A0P0VYG3_ORYSJ Os03g0400500 OSNPB_030400500 ENOG411EG8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport Os05g0473000 protein A0A0N7KKY4 A0A0N7KKY4_ORYSJ Os05g0473000 OSNPB_050473000 ENOG411EDWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411DQAR TPS6,TPS5,TPS8,TPS7,TPS9,TPS10 Q94AH8,O23617,Q0WUI9,Q9LMI0,Q9LRA7,O80738,A0A1P8AQ69,A0A1P8AUV4 TPS6_ARATH,TPS5_ARATH,TPS8_ARATH,TPS7_ARATH,TPS9_ARATH,TPS10_ARATH,A0A1P8AQ69_ARATH,A0A1P8AUV4_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 6) (AtTPS6),Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 5) (AtTPS5),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 8) (AtTPS8),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 7) (AtTPS7),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 9) (AtTPS9),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 10) (AtTPS10),Trehalose-6-phosphatase synthase S8,Trehalose phosphate synthase FUNCTION: Regulates plant architecture, shape of epidermal pavement cells and branching of trichomes. {ECO:0000269|PubMed:17981987}. MISCELLANEOUS: 2-deoxyglucose, but not phenformin, enhances the phosphorylation of TPS5. ARA:AT1G70290-MONOMER;,ARA:AT1G06410-MONOMER; 2.4.1.15; 2.4.1.15 97703,97454,97561,96688,98496,97324,93189,86807 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 6) (AtTPS6),Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 5) (AtTPS5),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 8) (AtTPS8),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 7) (AtTPS7),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 9) (AtTPS9),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 10) (AtTPS10),Trehalose-6-phosphatase synthase S8,Trehalose phosphate synthase cytoplasm [GO:0005737]; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [GO:0003825]; trehalose-phosphatase activity [GO:0004805]; trehalose biosynthetic process [GO:0005992]; trehalose metabolism in response to stress [GO:0070413],cytoplasm [GO:0005737]; phosphatase activity [GO:0016791]; transferase activity, transferring glycosyl groups [GO:0016757]; trehalose biosynthetic process [GO:0005992]; trehalose metabolism in response to stress [GO:0070413],cytosol [GO:0005829]; phosphatase activity [GO:0016791]; transferase activity, transferring glycosyl groups [GO:0016757]; trehalose biosynthetic process [GO:0005992]; trehalose metabolism in response to stress [GO:0070413],catalytic activity [GO:0003824]; trehalose biosynthetic process [GO:0005992] TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, flowers, siliques and roots. {ECO:0000269|PubMed:17981987}.,TISSUE SPECIFICITY: Low expression in leaves, stems, flower buds, flowers and siliques. {ECO:0000269|PubMed:15181208}.,TISSUE SPECIFICITY: Expressed in leaves, roots, stems and flowers. {ECO:0000269|PubMed:11520870}.,TISSUE SPECIFICITY: Expressed in seedlings, leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:11520870}. locus:2200216;,locus:2129425;,locus:2016179;,locus:2202290;,locus:2199847;,locus:2195678; AT1G68020,AT4G17770,AT1G70290,AT1G06410,AT1G23870,AT1G60140 Alphaalpha-trehalose-phosphate synthase UDP-forming Os09g0397300 protein (Putative trehalose-6-phosphate synthase/phosphatase),Os01g0749400 protein (Putative trehalose-6-phosphate synthase/phosphatase) (cDNA clone:J013001D09, full insert sequence) (cDNA clone:J013116P06, full insert sequence) (cDNA clone:J033143P14, full insert sequence),Os05g0517200 protein (Putative trehalose-6-phosphate synthase) (cDNA clone:J013110H22, full insert sequence),Os01g0730300 protein (Putative SL-TPS/P),Os01g0730300 protein (Fragment) Q6ERD9,Q5JNJ1,Q75II7,Q9AX07,A0A0P0V7R2,A0A0P0V7R7 Q6ERD9_ORYSJ,Q5JNJ1_ORYSJ,Q75II7_ORYSJ,Q9AX07_ORYSJ,A0A0P0V7R2_ORYSJ,A0A0P0V7R7_ORYSJ Os09g0397300 OJ1655_B12.15 OSNPB_090397300,Os01g0749400 OsJ_03457 OSNPB_010749400 P0481E12.40,Os05g0517200 Os05g0517200 B1130G10.15 OSNPB_050517200,Os01g0730300 OSNPB_010730300 P0435H01.24 P0456A01.41,Os01g0730300 OSNPB_010730300 ENOG411DQAS Q9SA95 Q9SA95_ARATH At1g11800/F25C20_3 (Endonuclease/exonuclease/phosphatase family protein) (F25C20.3 protein) 48996 At1g11800/F25C20_3 (Endonuclease/exonuclease/phosphatase family protein) (F25C20.3 protein) endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; metal ion binding [GO:0046872] locus:2027417; AT1G11800 Endonuclease Exonuclease phosphatase family protein Os07g0510800 protein,Os10g0401100 protein Q6Z4A4,A0A0P0XU54 Q6Z4A4_ORYSJ,A0A0P0XU54_ORYSJ P0409B11.30 Os07g0510800 OSNPB_070510800,Os10g0401100 OSNPB_100401100 ENOG411DQAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PlsC Os03g0166600 protein A0A0P0VTG4 A0A0P0VTG4_ORYSJ Os03g0166600 OSNPB_030166600 ENOG411DQAQ Q8VZE5,B9DGV7 Q8VZE5_ARATH,B9DGV7_ARATH At1g05410/T25N20_5 (CDPK adapter, putative (DUF1423)) (Uncharacterized protein At1g05410),AT1G05410 protein (CDPK adapter, putative (DUF1423)) 53369,50322 At1g05410/T25N20_5 (CDPK adapter, putative (DUF1423)) (Uncharacterized protein At1g05410),AT1G05410 protein (CDPK adapter, putative (DUF1423)) locus:2201056; AT1G05410 Protein of unknown function (DUF1423) Os03g0747200 protein (Fragment) A0A0P0W2X8 A0A0P0W2X8_ORYSJ Os03g0747200 OSNPB_030747200 ENOG411DQAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: calmodulin-binding family Os07g0633400 protein,Calmodulin-binding family protein, putative, expressed (Os10g0411500 protein) (cDNA clone:J023127G05, full insert sequence),Calmodulin-binding family protein, putative, expressed (Os03g0374500 protein),Os06g0206800 protein Q8L4T4,Q338D7,Q7Y169,A0A0P0WTU2 Q8L4T4_ORYSJ,Q338D7_ORYSJ,Q7Y169_ORYSJ,A0A0P0WTU2_ORYSJ P0455H11.102 P0519E12.132 Os07g0633400 OSNPB_070633400,Os10g0411500 LOC_Os10g27170 Os10g0411500 OsJ_31494 OSNPB_100411500,Os03g0374500 LOC_Os03g25760 OSJNBa0090L05.14 OSNPB_030374500,Os06g0206800 OSNPB_060206800 ENOG411DQAW RLF Q9LXD1,A0A1P8BAR6 RLF_ARATH,A0A1P8BAR6_ARATH Cytochrome b5 domain-containing protein RLF (Protein REDUCED LATERAL ROOT FORMATION),Reduced lateral root formation DISRUPTION PHENOTYPE: Reduced number of emerged lateral roots and lateral root primordia leading to small leaves and short stems in flowering plants. {ECO:0000269|PubMed:20230485}. reduced lateral root formation Semi-dwarf; Fewer lateral roots; Short primary roots-H. Fukaki-2010 FUNCTION: Involved in the control of lateral root (LR) formation. Acts a positive regulator of early cell divisions involved in LR initiation, independentely of ARF7 and ARF19-mediated auxin signaling. {ECO:0000269|PubMed:20230485}. ARA:GQT-1983-MONOMER; R-ATH-1237044; 23697,29029 Cytochrome b5 domain-containing protein RLF (Protein REDUCED LATERAL ROOT FORMATION),Reduced lateral root formation cytosol [GO:0005829]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; lateral root formation [GO:0010311]; regulation of growth [GO:0040008],heme binding [GO:0020037]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:20230485}. locus:2144811; AT5G09680 Cytochrome b5 Flavohemoprotein b5/b5R-like (Os07g0232200 protein) Q84YL2 Q84YL2_ORYSJ Os07g0232200 OsJ_23624 OSJNBa0086N05.132 OSNPB_070232200 ENOG411DQAT A0A1P8AUD3,A0A1P8AUG7,A0A1P8AUB8,A0A1P8AUD0,F4HR52,F4HR54,F4HR53 A0A1P8AUD3_ARATH,A0A1P8AUG7_ARATH,A0A1P8AUB8_ARATH,A0A1P8AUD0_ARATH,F4HR52_ARATH,F4HR54_ARATH,F4HR53_ARATH Disease resistance protein (TIR-NBS-LRR class),Transmembrane receptors / ATP binding protein 156965,137031,157354,123195,156667,176107,156372 Disease resistance protein (TIR-NBS-LRR class),Transmembrane receptors / ATP binding protein ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2205804;,locus:2205824; AT1G27170,AT1G27180 resistance protein NA NA NA NA NA NA NA ENOG411DQAU XYL1,XYL2 Q9S7Y7,F4J6T7,Q9LYF8 XYL1_ARATH,XYL2_ARATH,Q9LYF8_ARATH Alpha-xylosidase 1 (EC 3.2.1.177),Putative alpha-xylosidase 2 (EC 3.2.1.177),AT5g11720/T22P22_110 (Alpha-glucosidase 1) (Glycosyl hydrolases family 31 protein) DISRUPTION PHENOTYPE: No visible growth or morphological phenotypes, with the exception of shorter siliques. Loss of alpha-xylosidase activity and altered xyloglucan composition. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:20801759, ECO:0000269|PubMed:21170548}. Slightly altered silique, trichome, and leaf morphology-J. Sampedro-2002 FUNCTION: Glycoside hydrolase releasing xylosyl residues from xyloglucan oligosaccharides at the non-reducing end. Has alpha-xylosidase activity against xylan oligosaccharides. Also has alpha-glucosidase activity against p-nitrophenyl-alpha-D-glucopyranoside. No activity against p-nitrophenyl-D-xyloside. {ECO:0000269|PubMed:11402218, ECO:0000269|PubMed:20801759, ECO:0000269|PubMed:21170548}. ARA:AT1G68560-MONOMER;,ARA:AT5G11720-MONOMER; R-ATH-189085;R-ATH-5357572;R-ATH-6798695; 3.2.1.177; 3.2.1.177 102399,97450,101118 Alpha-xylosidase 1 (EC 3.2.1.177),Putative alpha-xylosidase 2 (EC 3.2.1.177),AT5g11720/T22P22_110 (Alpha-glucosidase 1) (Glycosyl hydrolases family 31 protein) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; alpha-D-xyloside xylohydrolase [GO:0061634]; alpha-L-arabinofuranosidase activity [GO:0046556]; carbohydrate binding [GO:0030246]; xylan 1,4-beta-xylosidase activity [GO:0009044]; xyloglucan 1,6-alpha-xylosidase activity [GO:0080176]; cell wall organization [GO:0071555]; response to cadmium ion [GO:0046686]; xylan catabolic process [GO:0045493]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; plasmodesma [GO:0009506]; alpha-D-xyloside xylohydrolase [GO:0061634]; carbohydrate binding [GO:0030246]; cell wall organization [GO:0071555]; polysaccharide catabolic process [GO:0000272],apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; carbohydrate binding [GO:0030246]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] DEVELOPMENTAL STAGE: Expressed at higher levels in younger, faster growing leaves than in older, slower growing leaves. {ECO:0000269|PubMed:11402218}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Expressed in cell types undergoing cell wall modifications, including trichomes, vasculature, stomata, and elongating anther filaments. Not detected in pollen. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:20801759}. locus:2026895;,locus:2077142;,locus:2181930; AT1G68560,AT3G45940,AT5G11720 alpha-glucosidase Probable alpha-glucosidase Os06g0675700 (EC 3.2.1.20) (Maltase),Os01g0130400 protein (cDNA clone:J033090B18, full insert sequence),Os06g0676700 protein (Putative alpha-glucosidase) Q653V7,Q0JQZ2,Q653V4 AGLU_ORYSJ,Q0JQZ2_ORYSJ,Q653V4_ORYSJ Os06g0675700 LOC_Os06g46284 B1153E06.2 OsJ_22347,Os01g0130400 Os01g0130400 OSNPB_010130400,B1153E06.13-1 P0710B08.7-1 Os06g0676700 OSNPB_060676700 ENOG411DQAZ AMY3 Q94A41 AMY3_ARATH Alpha-amylase 3, chloroplastic (AtAMY3) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:15637061}. Plants cold-shocked for 6h have an increased starch content compared to wildtype. FUNCTION: Possesses endoamylolytic activity in vitro, but seems not required for breakdown of transitory starch in leaves. May be involved in the determination of the final structure of glucans by shortening long linear phospho-oligosaccharides in the chloroplast stroma. Can act on both soluble and insoluble glucan substrates to release small linear and branched malto-oligosaccharides (PubMed:24089528). Works synergistically with beta-amylase toward efficient starch degradation (PubMed:24089528). Has activity against p-nitrophenyl maltoheptaoside (BPNP-G7), amylopectin and beta-limit dextrin (PubMed:24089528). Involved in stress-induced starch degradation (PubMed:27436713). {ECO:0000269|PubMed:15637061, ECO:0000269|PubMed:19074683, ECO:0000269|PubMed:19141707, ECO:0000269|PubMed:21294843, ECO:0000269|PubMed:24089528, ECO:0000269|PubMed:27436713}. ARA:AT1G69830-MONOMER; 3.2.1.1 99842 Alpha-amylase 3, chloroplastic (AtAMY3) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; alpha-amylase activity [GO:0004556]; alpha-amylase activity (releasing maltohexaose) [GO:0103025]; calcium ion binding [GO:0005509]; starch catabolic process [GO:0005983] TISSUE SPECIFICITY: Expressed in developing siliques. {ECO:0000269|PubMed:15927942}. locus:2196759; AT1G69830 Alpha-amylase C-terminal beta-sheet domain Os01g0715400 protein (cDNA clone:J023048B02, full insert sequence),Os01g0715400 protein,Os01g0715400 protein (Fragment) Q5JLT1,A0A0P0V7F0,A0A0P0V7G8 Q5JLT1_ORYSJ,A0A0P0V7F0_ORYSJ,A0A0P0V7G8_ORYSJ B1131B07.19-1 Os01g0715400 OSNPB_010715400,Os01g0715400 OSNPB_010715400 ENOG411DQAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Male sterility protein Os07g0416100 protein Q7XHU2 Q7XHU2_ORYSJ Os07g0416100 Os07g0416100 OSJNBa0066B06.104 OSNPB_070416100 ENOG411DQAY Q9LYR2,Q94JS0 Q9LYR2_ARATH,Q94JS0_ARATH Cytochrome b-c1 complex subunit Rieske, mitochondrial (EC 1.10.2.2) FUNCTION: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. {ECO:0000250|UniProtKB:P08067}. MISCELLANEOUS: The Rieske protein is a high potential 2Fe-2S protein. {ECO:0000250|UniProtKB:P08067}. ARA:AT5G13440-MONOMER;,ARA:AT5G13430-MONOMER; 1.10.2.2 29902,29608 Cytochrome b-c1 complex subunit Rieske, mitochondrial (EC 1.10.2.2) mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; metal ion binding [GO:0046872]; ubiquinol-cytochrome-c reductase activity [GO:0008121],membrane [GO:0016020]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; metal ion binding [GO:0046872]; ubiquinol-cytochrome-c reductase activity [GO:0008121] locus:2181675;,locus:2181670; AT5G13440,AT5G13430 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity) Cytochrome b-c1 complex subunit Rieske, mitochondrial (EC 1.10.2.2) Q7XLG4,Q6H4M9 Q7XLG4_ORYSJ,Q6H4M9_ORYSJ Os04g0398500 OSJNBa0039C07.12 OSNPB_040398500,Os02g0520800 OSJNBa0047A17.2 OSJNBb0003H22.14 OSNPB_020520800 FUNCTION: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. {ECO:0000256|RuleBase:RU004494}. MISCELLANEOUS: The Rieske protein is a high potential 2Fe-2S protein. {ECO:0000256|RuleBase:RU004494}. ENOG411DQAB PPD6 Q9LXX5 PPD6_ARATH PsbP domain-containing protein 6, chloroplastic (OEC23-like protein 1) FUNCTION: May be involved in the redox regulation of photosystem II. {ECO:0000269|PubMed:20049866}. MetaCyc:AT3G56650-MONOMER; 28630 PsbP domain-containing protein 6, chloroplastic (OEC23-like protein 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2102544; AT3G56650 PsbP domain-containing protein 6 Os01g0805300 protein (Thylakoid lumenal 20 kDa protein-like) (cDNA clone:006-208-C01, full insert sequence) (cDNA clone:006-311-E12, full insert sequence) (cDNA clone:J013042G03, full insert sequence) Q5VQX1 Q5VQX1_ORYSJ Os01g0805300 Os01g0805300 OsJ_03797 OSNPB_010805300 P0034E02.55 ENOG411DQAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF946) Expressed protein (OSJNBa0031O09.02) (Os03g0721300 protein) (Pre-mRNA processing protein PRP39, putative, expressed) (cDNA clone:J013135K11, full insert sequence) Q8LLP6 Q8LLP6_ORYSJ OSJNBa0031O09.02 B1377B10.20 LOC_Os03g51150 Os03g0721300 OsJ_12384 OSNPB_030721300 ENOG411DQAA ; P92519 M810_ARATH Uncharacterized mitochondrial protein AtMg00810 (ORF240b) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07683) is not demonstrated. 26776 Uncharacterized mitochondrial protein AtMg00810 (ORF240b) mitochondrion [GO:0005739] locus:504954564; AT2G07683ATMG00810; Retrotransposon protein NA NA NA NA NA NA NA ENOG411DQAF APX2,APX1 Q1PER6,Q05431,F4HU93 APX2_ARATH,APX1_ARATH,F4HU93_ARATH L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (L-ascorbate peroxidase 1b) (APX1b) (AtAPx02),L-ascorbate peroxidase 1, cytosolic (AP) (AtAPx01) (EC 1.11.1.11),Ascorbate peroxidase 1 Slow growth; Late flowering; Sensitive to a combination of drought and high temperature-R. Mittler-2003 FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}.,FUNCTION: Plays a key role in hydrogen peroxide removal. Constitutes a central component of the reactive oxygen gene network. {ECO:0000269|PubMed:15608336}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ARA:AT3G09640-MONOMER;,ARA:GQT-2090-MONOMER; 1.11.1.11; 1.11.1.11 28006,27561,27520 L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (L-ascorbate peroxidase 1b) (APX1b) (AtAPx02),L-ascorbate peroxidase 1, cytosolic (AP) (AtAPx01) (EC 1.11.1.11),Ascorbate peroxidase 1 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]; response to reactive oxygen species [GO:0000302],cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; cellular response to oxidative stress [GO:0034599]; embryo development ending in seed dormancy [GO:0009793]; hydrogen peroxide catabolic process [GO:0042744]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to heat [GO:0009408]; response to reactive oxygen species [GO:0000302]; response to salt stress [GO:0009651],heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Detected in bundle sheath cells, the photosynthetic cells that surround the phloem and xylem. {ECO:0000269|PubMed:12609042}.,TISSUE SPECIFICITY: Predominantly expressed in flowers. {ECO:0000269|PubMed:9808745}. locus:2074914;,locus:2026616; AT3G09640,AT1G07890 ascorbate peroxidase L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (APXb) (OsAPx2),L-ascorbate peroxidase 1, cytosolic (APXa) (EC 1.11.1.11) (OsAPx1) Q9FE01,Q10N21 APX2_ORYSJ,APX1_ORYSJ APX2 SS622 Os07g0694700 LOC_Os07g49400 OsJ_25704 P0627E10.14,APX1 Os03g0285700 LOC_Os03g17690 OsJ_009999 OSJNBa0013D02.10 DISRUPTION PHENOTYPE: Semi-dwarf plants, yellow-green leaves, leaf lesion mimic phenotype, abnormal anther morphology, defects in pollen viability and seed sterility. {ECO:0000269|PubMed:23468992}. FUNCTION: Plays a key role in hydrogen peroxide removal (PubMed:15685422). Plays an important role in plant growth and development by protecting the seedlings from abiotic stresses through scavenging reactive oxygen species. Required for pollen viability (PubMed:23468992). {ECO:0000269|PubMed:15685422, ECO:0000269|PubMed:23468992}.,FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000269|PubMed:15685422}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+) (By similarity). Plants over-expressing APX2 have increased ascorbate peroxidase activity and exhibit enhanced tolerance to salt, drought and cold stresses (PubMed:23468992). {ECO:0000250, ECO:0000269|PubMed:23468992}.,MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ENOG411DQAG GC5 Q0WVL7,A0A1P8AQY7,F4HQB9 GOGC5_ARATH,A0A1P8AQY7_ARATH,F4HQB9_ARATH Golgin candidate 5 (AtGC5),Golgin Putative 5 FUNCTION: Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. {ECO:0000250}. R-ATH-6811440; 108354,109756,110726 Golgin candidate 5 (AtGC5),Golgin Putative 5 Golgi apparatus [GO:0005794],cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634] locus:2017889; AT1G79830 golgin candidate Os05g0559900 protein (cDNA clone:J013098O16, full insert sequence),Os05g0559900 protein Q6AT30,A0A0P0WQ73 Q6AT30_ORYSJ,A0A0P0WQ73_ORYSJ Os05g0559900 Os05g0559900 OJ1115_B06.2 OSJNBa0001A14.17 OSNPB_050559900,Os05g0559900 OSNPB_050559900 ENOG411DQAD Q1G322 Q1G322_ARATH Uncharacterized protein 39520 Uncharacterized protein locus:4515102600; AT1G27461 Inherit from KOG: cirrhosis autosomal recessive 1A (cirhin) Os07g0585700 protein (Putative zinc finger protein Sdr4) Q8H5K8 Q8H5K8_ORYSJ OJ1060_D03.127 Sdr4 Os07g0585700 OSNPB_070585700 ENOG411DQAE SHL,SHL1 Q9FEN9,F4JV93 SHL_ARATH,F4JV93_ARATH Chromatin remodeling protein SHL (Protein SHORT LIFE),PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein DISRUPTION PHENOTYPE: In antisense plants, dwarf phenotype characterized by stunted axis, dark-green leaves, compact rosette structure, less small leaves, fewer flowers and seeds, and associated with a delayed development and late flowering (PubMed:11129039). In shl-2, acceleration of flowering, especially in short-days (SD), associated with a shorter adult vegetative phase. Other developmental defects include premature senescence, smaller leaves and siliques. Higher H3K9K14 acetylation in the genomic region of the SOC1 locus (PubMed:25281686). {ECO:0000269|PubMed:11129039, ECO:0000269|PubMed:25281686}. FUNCTION: Chromatin remodeling factor that binds to methylated histone (e.g. H3K4me2/3) to prevent their acetylation (e.g. H3K9K14Ac), likely by recruiting histone deacetylase (HDAC) complexes, and thus regulate the transcription of target genes (PubMed:25281686). Required during development and for fertility, probably by modulating developmental gene expression (PubMed:11129039, PubMed:15082927, PubMed:25281686). Promotes development speed, but at fitness cost (PubMed:11129039). Involved in the chromatin-mediated repression of floral initiation and controls genes regulating flowering. Negatively regulates the expression of the floral integrator SOC1, by preventing high levels of H3 acetylation, thus maintaining an inactive chromatin conformation (PubMed:25281686). {ECO:0000269|PubMed:11129039, ECO:0000269|PubMed:15082927, ECO:0000269|PubMed:25281686}. 26122,19452 Chromatin remodeling protein SHL (Protein SHORT LIFE),PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein chromatin [GO:0000785]; chromatin silencing complex [GO:0005677]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; chromatin organization [GO:0006325]; chromatin silencing [GO:0006342]; covalent chromatin modification [GO:0016569]; flower development [GO:0009908]; heterochromatin assembly [GO:0031507]; negative regulation of histone acetylation [GO:0035067]; post-embryonic development [GO:0009791]; regulation of photoperiodism, flowering [GO:2000028]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chromatin binding [GO:0003682] DEVELOPMENTAL STAGE: Expressed at all stages of development, from seedlings to adult reproductive phase. {ECO:0000269|PubMed:11129039, ECO:0000269|PubMed:25281686}. TISSUE SPECIFICITY: Expressed ubiquitously (PubMed:25281686). Mostly expressed in roots, stems, leaves and flowers, and, to a lower extent, in siliques (PubMed:11129039). {ECO:0000269|PubMed:11129039, ECO:0000269|PubMed:25281686}. locus:2120252; AT4G39100 domain-containing protein NA NA NA NA NA NA NA ENOG411DQAJ Q0WW26,Q9XIH0,F4IKA7 COPG_ARATH,Q9XIH0_ARATH,F4IKA7_ARATH Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP),Structural molecule (Uncharacterized protein At2g16200),Structural molecule FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811434; 98491,7233,8866 Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP),Structural molecule (Uncharacterized protein At2g16200),Structural molecule chloroplast [GO:0009507]; COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; structural molecule activity [GO:0005198]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],membrane coat [GO:0030117]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2139479;,locus:2052976; AT4G34450,AT2G16200 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles which further mediate biosynthetic protein transport from the ER via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) Coatomer subunit gamma-2 (Gamma-2-coat protein) (Gamma-2-COP),Coatomer subunit gamma-1 (Gamma-1-coat protein) (Gamma-1-COP),Coatomer subunit gamma Q6Z382,Q8H852,B7EEW9 COPG2_ORYSJ,COPG1_ORYSJ,B7EEW9_ORYSJ Os07g0201100 LOC_Os07g10150 OsJ_23473 P0519E02.25,Os03g0227000 LOC_Os03g12590 OJ1626B05.5,Os03g0227000 OSNPB_030227000 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.,FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. {ECO:0000256|PIRNR:PIRNR037093}. ENOG411DQAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tsl-kinase interacting protein Os01g0182400 protein (Fragment),Os07g0634100 protein A0A0P0UYW5,A0A0P0X906 A0A0P0UYW5_ORYSJ,A0A0P0X906_ORYSJ Os01g0182400 OSNPB_010182400,Os07g0634100 OSNPB_070634100 ENOG411DQAH BAG1 Q0WUQ1 BAG1_ARATH BAG family molecular chaperone regulator 1 (Bcl-2-associated athanogene 1) FUNCTION: Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses. {ECO:0000250}. 38191 BAG family molecular chaperone regulator 1 (Bcl-2-associated athanogene 1) cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; chaperone binding [GO:0051087]; ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome [GO:0071629] locus:2173108; AT5G52060 BAG domain-containing protein Os09g0524800 protein (cDNA clone:001-013-D08, full insert sequence) (cDNA clone:001-203-E09, full insert sequence),Os08g0546100 protein (Putative BAG domain containing protein) Q651M9,Q6ZFW2 Q651M9_ORYSJ,Q6ZFW2_ORYSJ Os09g0524800 Os09g0524800 OsJ_30057 OSJNBa0047P18.22 OSNPB_090524800,OJ1323_A06.20 Os08g0546100 OSNPB_080546100 ENOG411DQAI NHL6,NHL25 Q8LD98,F4K5V1 NHL6_ARATH,F4K5V1_ARATH NDR1/HIN1-like protein 6,NDR1/HIN1-like 25 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seeds show decreased sensitivity to abscisic acid (ABA) during germination. {ECO:0000269|PubMed:26849212}. FUNCTION: Plays an important role in the abiotic stresses-induced abscisic acid (ABA) signaling and biosynthesis. Acts as positive regulator of ABA-mediated seed germination inhibition. Functions downstream of ABF2/AREB1, ABF4/AREB2 and ABF3. {ECO:0000269|PubMed:26849212}. 28574,27960 NDR1/HIN1-like protein 6,NDR1/HIN1-like 25 cytosol [GO:0005829]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid biosynthetic process [GO:0010116]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt [GO:1902074],integral component of membrane [GO:0016021]; defense response, incompatible interaction [GO:0009814]; salicylic acid mediated signaling pathway [GO:0009863] TISSUE SPECIFICITY: Highly expressed in seeds and at lower level in roots and senescing leaves. Expressed in leaves and flowers. {ECO:0000269|PubMed:26849212}. locus:2018531;,locus:2167489; AT1G65690,AT5G36970 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411DQAN CAM1,CAM6,CAM3,CAM4,CAM2,CAM7,CAM5,CML12,CML10,TCH3 P0DH95,Q03509,P0DH98,P0DH96,P0DH97,P59220,Q682T9,P25071,P30187,A0A1P8ANC4,F4IJ44,A0A1I9LPJ1,A0A1P8B183,A0A1P8BAP4,A0A1I9LPJ2,F4K8M2,F4IJ46,F4IVN6,F4IEU4,F4K8M3,F4IJ45 CALM1_ARATH,CALM6_ARATH,CALM3_ARATH,CALM4_ARATH,CALM2_ARATH,CALM7_ARATH,CALM5_ARATH,CML12_ARATH,CML10_ARATH,A0A1P8ANC4_ARATH,F4IJ44_ARATH,A0A1I9LPJ1_ARATH,A0A1P8B183_ARATH,A0A1P8BAP4_ARATH,A0A1I9LPJ2_ARATH,F4K8M2_ARATH,F4IJ46_ARATH,F4IVN6_ARATH,F4IEU4_ARATH,F4K8M3_ARATH,F4IJ45_ARATH Calmodulin-1 (CaM-1),Calmodulin-6 (CaM-6),Calmodulin-3 (CaM-3),Calmodulin-4 (CaM-4),Calmodulin-2 (CaM-2),Calmodulin-7 (CaM-7),Calmodulin-5 (CaM-5),Calmodulin-like protein 12 (Touch-induced calmodulin-related protein 3),Calmodulin-like protein 10 (22 kDa calmodulin-like calcium-binding protein) (CABP-22),Calmodulin 4,Calcium-binding EF hand family protein,Calmodulin 7,Calmodulin 1,Calmodulin 2,Calmodulin 5 Sensitive to high temperature-D. Sun-2009,Male gametophyte defective; Homozygotes appear wild type-C. Tonelli-2010 FUNCTION: Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.,FUNCTION: Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Activates MPK8 in vitro. {ECO:0000269|PubMed:21419340}.,FUNCTION: Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Activates MPK8 through direct binding and in an calcium-dependent manner. {ECO:0000269|PubMed:21419340}.,FUNCTION: Potential calcium sensor that binds calcium in vitro.,FUNCTION: Potential calcium sensor. MISCELLANEOUS: This protein has four functional calcium-binding sites. R-ATH-114608;R-ATH-2514859;R-ATH-4086398;R-ATH-418359;R-ATH-425561;R-ATH-442729;R-ATH-445355;R-ATH-5578775;R-ATH-5627123;R-ATH-8876725;R-ATH-936837; 16862,16834,16820,16848,36807,21727,12896,32802,16359,15365,24565,19812,18109,20576,17829,18526,22569 Calmodulin-1 (CaM-1),Calmodulin-6 (CaM-6),Calmodulin-3 (CaM-3),Calmodulin-4 (CaM-4),Calmodulin-2 (CaM-2),Calmodulin-7 (CaM-7),Calmodulin-5 (CaM-5),Calmodulin-like protein 12 (Touch-induced calmodulin-related protein 3),Calmodulin-like protein 10 (22 kDa calmodulin-like calcium-binding protein) (CABP-22),Calmodulin 4,Calcium-binding EF hand family protein,Calmodulin 7,Calmodulin 1,Calmodulin 2,Calmodulin 5 cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509],intracellular [GO:0005622]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722],cytoplasm [GO:0005737]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722],calcium ion binding [GO:0005509],cytoplasm [GO:0005737]; microtubule [GO:0005874]; calcium ion binding [GO:0005509],calcium ion binding [GO:0005509]; detection of calcium ion [GO:0005513]; regulation of photomorphogenesis [GO:0010099],plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; calcium ion binding [GO:0005509]; response to absence of light [GO:0009646]; response to mechanical stimulus [GO:0009612]; thigmotropism [GO:0009652],cytoplasm [GO:0005737]; calcium ion binding [GO:0005509]; cellular response to oxidative stress [GO:0034599]; regulation of L-ascorbic acid biosynthetic process [GO:2000082],nucleus [GO:0005634]; calcium ion binding [GO:0005509]; detection of calcium ion [GO:0005513]; response to mechanical stimulus [GO:0009612],calcium ion binding [GO:0005509]; pollen germination [GO:0009846]; protein catabolic process [GO:0030163],plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; calcium ion binding [GO:0005509],plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; signal transducer activity [GO:0004871] TISSUE SPECIFICITY: Specifically expressed in leaves. locus:1005716170;,locus:2103600;,locus:2101049;,locus:2063230;,locus:2063245;,locus:2156045;,locus:2063224;,locus:2059324;,locus:2029007; AT5G37780,AT5G21274,AT3G56800,AT1G66410,AT2G41110,AT3G43810,AT2G27030,AT2G41100,AT2G41090 Calmodulin mediates the control of a large number of enzymes ion channels and other proteins by Ca(2 ). Among the enzymes to be stimulated by the calmodulin-Ca(2 ) complex are a number of protein kinases and phosphatases Putative calmodulin-like protein 6,Calmodulin-3 (CaM-3),Calmodulin-2 (CaM-2),Calmodulin-1 (CaM-1),Os11g0586200 protein,Os07g0687200 protein (Fragment),Os02g0253601 protein (Fragment),Os02g0254366 protein (Fragment),Os04g0205000 protein (Fragment),Os02g0234051 protein Q2R1Z5,Q0JNL7,Q6F332,Q0JNS6,A0A0P0Y450,A0A0P0XAT9,A0A0P0VH44,A0A0P0VH48,A0A0P0W7C9,A0A0N7KEZ6 CML6_ORYSJ,CALM3_ORYSJ,CALM2_ORYSJ,CALM1_ORYSJ,A0A0P0Y450_ORYSJ,A0A0P0XAT9_ORYSJ,A0A0P0VH44_ORYSJ,A0A0P0VH48_ORYSJ,A0A0P0W7C9_ORYSJ,A0A0N7KEZ6_ORYSJ CML6 Os11g0586200 LOC_Os11g37550 OsJ_033072,CAM3 Os01g0279300 LOC_Os01g17190 OsJ_001265 OsJ_01307 P0003H10.4,CAM2 CAM Os05g0491100 LOC_Os05g41210 OsJ_018255 OsJ_19025 OSJNBa0088I06.9,CAM1-1 CAM1 Os03g0319300 LOC_Os03g20370 OsJ_010214; CAM1-2 CAM Os07g0687200 LOC_Os07g48780 OJ1150_E04.120-1 OJ1200_C08.124-1 OsJ_024630 OsJ_25643; CAM1-3 Os01g0267900 LOC_Os01g16240 OsJ_001186 P0011D01.22,Os11g0586200 OSNPB_110586200,Os07g0687200 OSNPB_070687200,Os02g0253601 OSNPB_020253601,Os02g0254366 OSNPB_020254366,Os04g0205000 OSNPB_040205000,Os02g0234051 OSNPB_020234051 FUNCTION: Potential calcium sensor. {ECO:0000250}.,FUNCTION: Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. MISCELLANEOUS: This protein has four functional calcium-binding sites. ENOG411DQAM EXO1 Q8L6Z7,B3H7B3 EXO1_ARATH,B3H7B3_ARATH Exonuclease 1 (EC 3.1.-.-),5'-3' exonuclease family protein FUNCTION: Putative 5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. May be involved in DNA mismatch repair (MMR) (By similarity). {ECO:0000250}. R-ATH-5358565;R-ATH-5693616; 3.1.-.- 82249,64969 Exonuclease 1 (EC 3.1.-.-),5'-3' exonuclease family protein nucleus [GO:0005634]; 5'-3' exodeoxyribonuclease activity [GO:0035312]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; DNA repair [GO:0006281],5'-3' exodeoxyribonuclease activity [GO:0035312]; DNA binding [GO:0003677]; DNA repair [GO:0006281] locus:2013633; AT1G29630 exonuclease Exonuclease 1 (EC 3.1.-.-) (OsEXO-1) Q60GC1 EXO1_ORYSJ EXO1 Os01g0777300 LOC_Os01g56940 P0413G02.29 FUNCTION: Putative 5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. May be involved in DNA mismatch repair (MMR) (By similarity). {ECO:0000250}. ENOG411DQA2 RPL19A,RPL19C,RPL19B Q9SRX2,P49693,Q9LUQ6,Q680Q9 RL191_ARATH,RL193_ARATH,RL192_ARATH,Q680Q9_ARATH 60S ribosomal protein L19-1 (Protein EMBRYO DEFECTIVE 2386),60S ribosomal protein L19-3,60S ribosomal protein L19-2,Probable ribosomal protein (Ribosomal protein L19e family protein) Embryo defective; Globular-D. Meinke-2002 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 24606,24202,24330,13710 60S ribosomal protein L19-1 (Protein EMBRYO DEFECTIVE 2386),60S ribosomal protein L19-3,60S ribosomal protein L19-2,Probable ribosomal protein (Ribosomal protein L19e family protein) cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2024695;,locus:2137854;,locus:2089383;,locus:2129955; AT1G02780,AT4G02230,AT3G16780,AT4G16030 ribosomal protein L19 Ribosomal protein L19 Q10LR6,Q84NX8 Q10LR6_ORYSJ,Q84NX8_ORYSJ Os03g0337800 LOC_Os03g21940 Os03g0337800 OsJ_10765 OSNPB_030337800,Os03g0579300 LOC_Os03g38260 OsJ_11537 OSJNBa0083K01.10 OSJNBb0016P23.5 OSNPB_030579300 ENOG411DQA3 Q93Y22 COPD_ARATH Coatomer subunit delta (Delta-coat protein) (Delta-COP) FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811434; 57719 Coatomer subunit delta (Delta-coat protein) (Delta-COP) COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasmodesma [GO:0009506]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2175269; AT5G05010 Coatomer subunit Coatomer subunit delta-1 (Delta-coat protein 1) (Delta-COP 1),Coatomer subunit delta-2 (Delta-coat protein 2) (Delta-COP 2),Coatomer subunit delta Q0DJA0,Q0DJ99,C7J5K7,A0A0P0XFL8 COPD1_ORYSJ,COPD2_ORYSJ,C7J5K7_ORYSJ,A0A0P0XFL8_ORYSJ Os05g0310800 LOC_Os05g24594,Os05g0311000 LOC_Os05g24594,Os08g0368000 Os08g0368000 OSNPB_080368000,Os08g0367625 OSNPB_080367625 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.,FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. {ECO:0000256|RuleBase:RU364018}. ENOG411DQA0 Q0WNW0,Q8W112,A0A1P8B9U3,A0A1P8BG25 Q0WNW0_ARATH,Q8W112_ARATH,A0A1P8B9U3_ARATH,A0A1P8BG25_ARATH Glycosyl hydrolase family protein (Uncharacterized protein At5g04885),Beta-D-glucan exohydrolase-like protein (Glycosyl hydrolase family protein) (Putative beta-D-glucan exohydrolase),Glycosyl hydrolase family protein ARA:AT5G04885-MONOMER;,ARA:AT5G20950-MONOMER; 72304,67927,74344,77162 Glycosyl hydrolase family protein (Uncharacterized protein At5g04885),Beta-D-glucan exohydrolase-like protein (Glycosyl hydrolase family protein) (Putative beta-D-glucan exohydrolase),Glycosyl hydrolase family protein anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; beta-glucosidase activity [GO:0008422]; glucan catabolic process [GO:0009251]; xyloglucan biosynthetic process [GO:0009969],apoplast [GO:0048046]; cell wall [GO:0005618]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; beta-glucosidase activity [GO:0008422]; glucan catabolic process [GO:0009251]; xyloglucan biosynthetic process [GO:0009969],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:504954860;,locus:2147117; AT5G04885,AT5G20950 lysosomal beta glucosidase-like Glycosyl hydrolase family 3 N terminal domain containing protein, expressed (Os03g0749300 protein) (Putative exoglucanase) (cDNA clone:J013001H22, full insert sequence),Glycosyl hydrolase family 3 N terminal domain containing protein, expressed (Os03g0749500 protein) (cDNA clone:J033023H22, full insert sequence),Os01g0771900 protein (Putative exo-1,3-beta-glucanase),Os03g0749300 protein (Fragment) Q10CU9,Q10CU4,Q94ED2,A0A0N7KI20,A0A0P0W3L7 Q10CU9_ORYSJ,Q10CU4_ORYSJ,Q94ED2_ORYSJ,A0A0N7KI20_ORYSJ,A0A0P0W3L7_ORYSJ OSJNBa0069E14.7 LOC_Os03g53800 Os03g0749300 OsJ_12577 OSNPB_030749300,Os03g0749500 LOC_Os03g53860 Os03g0749500 OSNPB_030749500,Os01g0771900 OSNPB_010771900 P0665A11.38 P0695H10.9,Os03g0749300 OSNPB_030749300 ENOG411DQA1 O22160 TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic (p15) 23779 Thylakoid lumenal 15 kDa protein 1, chloroplastic (p15) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977] locus:2055023; AT2G44920 thylakoid lumenal 15 kDa protein Os01g0144100 protein (cDNA clone:001-008-F11, full insert sequence) (cDNA clone:001-023-B04, full insert sequence) Q9ARP1 Q9ARP1_ORYSJ Os01g0144100 Os01g0144100 OSNPB_010144100 P0024G09.30 ENOG411DQA6 CDC27B,HBT Q8LGU6,A0A1P8AXY8 CD27B_ARATH,A0A1P8AXY8_ARATH Cell division cycle protein 27 homolog B (CDC27 homolog B) (Protein HOBBIT),CDC27 family protein DISRUPTION PHENOTYPE: Dwarf plant with small leaves and stunted growth. Defect in cell division and expansion. Defective endoreduplication. Cdc27a and cdc27b double mutant is gametophytic lethal (PubMed:17944809). {ECO:0000269|PubMed:17944809}. The roots in mutants was more than ten-fold shorter in length than the roots in the wild-type (Col-0).,Mutant plants have residual root meristem activity (weak allele). The root length in mutants was less than half of the root length in the wild-type (Col-0). Seedling lethal; Severe reduction to complete loss of root growth-B. Scheres-2002 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Functionally redundant with CDC27A in the control of gametophyte development. {ECO:0000269|PubMed:12368267, ECO:0000269|PubMed:17944809}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-174184; 83068,72468 Cell division cycle protein 27 homolog B (CDC27 homolog B) (Protein HOBBIT),CDC27 family protein anaphase-promoting complex [GO:0005680]; cell plate [GO:0009504]; nucleus [GO:0005634]; spindle [GO:0005819]; cell cycle [GO:0007049]; cell differentiation [GO:0030154]; cell division [GO:0051301]; protein ubiquitination [GO:0016567]; regulation of mitotic cell cycle [GO:0007346]; response to auxin [GO:0009733]; root cap development [GO:0048829]; root development [GO:0048364]; root meristem specification [GO:0010071] TISSUE SPECIFICITY: Specifically expressed in dividing and elongating cells. {ECO:0000269|PubMed:17944809}. locus:2061649; AT2G20000 cell division cycle protein 27 Os06g0622500 protein A0A0N7KMF5 A0A0N7KMF5_ORYSJ Os06g0622500 OSNPB_060622500 ENOG411DQA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein NA NA NA NA NA NA NA ENOG411DQA4 ABCG37,ABCG33 Q9LFH0,Q9ZUT8,A0A1P8B215,A0A1P8B240,A0A1P8B220 AB37G_ARATH,AB33G_ARATH,A0A1P8B215_ARATH,A0A1P8B240_ARATH,A0A1P8B220_ARATH ABC transporter G family member 37 (ABC transporter ABCG.37) (AtABCG37) (Pleiotropic drug resistance protein 9),ABC transporter G family member 33 (ABC transporter ABCG.33) (AtABCG33) (Pleiotropic drug resistance protein 5),Pleiotropic drug resistance 5 Sensitive to auxin-J. Friml-2010 FUNCTION: May be a general defense protein. {ECO:0000250}. 164106,160252,142493,151930,163693 ABC transporter G family member 37 (ABC transporter ABCG.37) (AtABCG37) (Pleiotropic drug resistance protein 9),ABC transporter G family member 33 (ABC transporter ABCG.33) (AtABCG33) (Pleiotropic drug resistance protein 5),Pleiotropic drug resistance 5 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; auxin polar transport [GO:0009926]; cellular response to indolebutyric acid stimulus [GO:0071366]; drug transmembrane transport [GO:0006855]; root development [GO:0048364]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810] TISSUE SPECIFICITY: Expressed in roots and, to a lower extent, in seedlings. {ECO:0000269|PubMed:12430018}.,TISSUE SPECIFICITY: Expressed in roots and stems. {ECO:0000269|PubMed:12430018}. locus:2084081;,locus:2049867; AT3G53480,AT2G37280 pleiotropic drug resistance ABC transporter G family member 50 (OsABCG50) (Pleiotropic drug resistance protein 23) (OsPDR23),ABC transporter G family member 41 (OsABCG41) (Pleiotropic drug resistance protein 2) (OsPDR2),ABC transporter G family member 49 (OsABCG49) (Pleiotropic drug resistance protein 22) (OsPDR22),Os02g0528900 protein,Os12g0512700 protein (Fragment),Os12g0512750 protein B9GDE5,Q8GU83,Q2QV81,A0A0P0VJX8,A0A0P0YAQ2,A0A0P0YAM3 AB50G_ORYSJ,AB41G_ORYSJ,AB49G_ORYSJ,A0A0P0VJX8_ORYSJ,A0A0P0YAQ2_ORYSJ,A0A0P0YAM3_ORYSJ ABCG50 PDR23 Os12g0512700 LOC_Os12g32820 OsJ_36269,ABCG41 PDR2 Os02g0528900 LOC_Os02g32690 P0475F05.27 P0476H10.11,ABCG49 PDR22 Os12g0239900/Os12g0239950 LOC_Os12g13720 OsJ_35688,Os02g0528900 OSNPB_020528900,Os12g0512700 OSNPB_120512700,Os12g0512750 OSNPB_120512750 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411DQA5 PCMP-H27 O49619 PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130, chloroplastic 90786 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2131631; AT4G35130 Pentatricopeptide repeat-containing protein Os03g0136700 protein (Fragment) A0A0P0VT24 A0A0P0VT24_ORYSJ Os03g0136700 OSNPB_030136700 ENOG411DQA8 TPR10 Q9SR03,F4J4V1,F4J4V4 Q9SR03_ARATH,F4J4V1_ARATH,F4J4V4_ARATH Ankyrin repeat family protein (Ankyrin-like protein),Ankyrin repeat family protein 49259,74010,49130 Ankyrin repeat family protein (Ankyrin-like protein),Ankyrin repeat family protein locus:2084868; AT3G04710 ankyrin repeat family protein Os05g0103600 protein (Putative ankyrin protein) (cDNA clone:J033098E05, full insert sequence) Q75M28 Q75M28_ORYSJ Os05g0103600 OSNPB_050103600 P0668H12.9 ENOG411DQA9 Q8VZN6,A0A1I9LQ71,A0A178VHG7,A0A1I9LQ69,A0A1I9LQ70,F4JF74 Q8VZN6_ARATH,A0A1I9LQ71_ARATH,A0A178VHG7_ARATH,A0A1I9LQ69_ARATH,A0A1I9LQ70_ARATH,F4JF74_ARATH D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (Uncharacterized protein At3g54970),D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 39536,28812,34312,28694,34036,33939 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (Uncharacterized protein At3g54970),D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein transaminase activity [GO:0008483]; metabolic process [GO:0008152] locus:2082722; AT3G54970 Aminotransferase class IV Os02g0252600 protein (Fragment) Q0E2C2 Q0E2C2_ORYSJ Os02g0252600 Os02g0252600 OSNPB_020252600 ENOG411ECVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoesterase family NA NA NA NA NA NA NA ENOG411ECVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os12g0592500 protein) (cDNA clone:J033020K05, full insert sequence) Q2QMT0 Q2QMT0_ORYSJ Os12g0592500 LOC_Os12g40140 Os12g0592500 OSNPB_120592500 ENOG411ECVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 ATP-dependent DNA helicase (EC 3.6.4.12) (Fragment),Os03g0423850 protein (Fragment) Q0JET1,A0A0N7KHG6 Q0JET1_ORYSJ,A0A0N7KHG6_ORYSJ Os04g0206200 Os04g0206200 OSNPB_040206200,Os03g0423850 OSNPB_030423850 ENOG411ECVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Short chain dehydrogenase NA NA NA NA NA NA NA ENOG411ECVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECVE PLC2,PLC7 Q39033,Q9LY51,F4IX90 PLCD2_ARATH,PLCD7_ARATH,F4IX90_ARATH Phosphoinositide phospholipase C 2 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC2) (AtPLC2) (PI-PLC2),Phosphoinositide phospholipase C 7 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC7) (AtPLC10) (AtPLC7) (PI-PLC7),Phosphoinositide phospholipase C (EC 3.1.4.11) FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. At physiological calcium concentration, the preferred substrate is phosphatidylinositol 4,5-bisphosphate versus phosphatidylinositol. {ECO:0000269|PubMed:11377433, ECO:0000269|Ref.10}.,FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. {ECO:0000250, ECO:0000269|Ref.3}. MetaCyc:MONOMER-1621;,ARA:AT3G55940-MONOMER; R-ATH-112043;R-ATH-114604;R-ATH-1855204;R-ATH-202433;R-ATH-399997;R-ATH-416476;R-ATH-434316;R-ATH-5607764; 3.1.4.11; 3.1.4.11 66122,66462,62477 Phosphoinositide phospholipase C 2 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC2) (AtPLC2) (PI-PLC2),Phosphoinositide phospholipase C 7 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC7) (AtPLC10) (AtPLC7) (PI-PLC7),Phosphoinositide phospholipase C (EC 3.1.4.11) intracellular [GO:0005622]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; embryo sac development [GO:0009553]; floral organ development [GO:0048437]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042]; microsporogenesis [GO:0009556]; positive regulation of auxin biosynthetic process [GO:0010601],intracellular [GO:0005622]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042],intracellular [GO:0005622]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Expressed in roots, shoots, leaves and flowers. {ECO:0000269|PubMed:9177324, ECO:0000269|Ref.10}.,TISSUE SPECIFICITY: Expressed in leaves, roots, flowers and siliques. {ECO:0000269|Ref.3}. locus:2103437;,locus:2082018; AT3G08510,AT3G55940 Pfam:efhand_like NA NA NA NA NA NA NA ENOG411EHTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os03g0638400 protein (Fragment) A0A0P0W150 A0A0P0W150_ORYSJ Os03g0638400 OSNPB_030638400 ENOG411EHTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTH PEP3 Q8LAX3 PEP3_ARATH Elicitor peptide 3 FUNCTION: Elicitor of plant defense. {ECO:0000250}. 10399 Elicitor peptide 3 cellular response to hypoxia [GO:0071456]; defense response [GO:0006952] locus:505006715; AT5G64905 NA NA NA NA NA NA NA NA ENOG411EHTN Q1G3V8 Q1G3V8_ARATH Cotton fiber protein 7975 Cotton fiber protein NA NA NA NA NA NA NA NA ENOG411EHTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits (By similarity) NA NA NA NA NA NA NA ENOG411EHTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTA Q2V2W2,Q2V2W3,Q2V4F0 DF265_ARATH,DF264_ARATH,DF266_ARATH Putative defensin-like protein 265,Putative defensin-like protein 264,Defensin-like protein 266 8727,9948,9103 Putative defensin-like protein 265,Putative defensin-like protein 264,Defensin-like protein 266 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023416;,locus:1009023460;,locus:1009023106; AT5G62627,AT5G62623,AT1G65352 cell killing NA NA NA NA NA NA NA ENOG411EHTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0480800 protein,Os05g0480900 protein,Os10g0198100 protein (Fragment) B9FJS9,B9FJT0,Q0IYK7 B9FJS9_ORYSJ,B9FJT0_ORYSJ,Q0IYK7_ORYSJ Os05g0480800 OsJ_18947 OSNPB_050480800,Os05g0480900 OsJ_18948 OSNPB_050480900,Os10g0198100 OSNPB_100198100 ENOG411EHT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyphosphate kinase 2 (PPK2) NA NA NA NA NA NA NA ENOG411EHT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHT3 O04468,A0A1P8AQ95,A0A1P8ANH7,A0A1P8AQC5,A0A1P8ANJ1,F4IBH1,B3H5R3,F4IBH0 O04468_ARATH,A0A1P8AQ95_ARATH,A0A1P8ANH7_ARATH,A0A1P8AQC5_ARATH,A0A1P8ANJ1_ARATH,F4IBH1_ARATH,B3H5R3_ARATH,F4IBH0_ARATH F5I14.4 protein (Transmembrane protein),Transmembrane protein 9352,10464,10410,9990,12122,9392,9373,6502 F5I14.4 protein (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2034173;,locus:2034114;,locus:4515102720; AT1G65500,AT1G65490,AT1G65486 NA NA NA NA NA NA NA NA ENOG411EHT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:TBC NA NA NA NA NA NA NA ENOG411EHT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHT6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHT4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E54V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E54T LA1,AtLAZY1 Q5XV40,A0A1P8BDM4 LAZY1_ARATH,A0A1P8BDM4_ARATH Protein LAZY 1 (AtLA1) (AtLAZY1),Regulator of nonsense transcript protein DISRUPTION PHENOTYPE: defective shoot gravitropism (PubMed:25028496, PubMed:23331961). Increased angle of inflorescence branches. {ECO:0000269|PubMed:23331961, ECO:0000269|PubMed:25028496}. FUNCTION: Involved in the regulation of shoot gravitropism (PubMed:25028496, PubMed:23331961). Involved in the regulation of inflorescence branch angle (PubMed:23331961). {ECO:0000269|PubMed:23331961, ECO:0000269|PubMed:25028496}. 40512,32474 Protein LAZY 1 (AtLA1) (AtLAZY1),Regulator of nonsense transcript protein integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in shoot apical meristem, vascular tissues, stele, endodermis and upper portion of the inflorescence stem. {ECO:0000269|PubMed:23331961}. locus:2174643; AT5G14090 NA NA NA NA NA NA NA NA ENOG411E54R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0162700 protein (cDNA clone:001-106-E06, full insert sequence),Expressed protein (Os03g0576500 protein) (cDNA clone:001-103-A05, full insert sequence) Q84SC4,Q10HT9 Q84SC4_ORYSJ,Q10HT9_ORYSJ P0577B11.139 OJ9990_A01.105 Os08g0162700 OSNPB_080162700,LOC_Os03g37954 Os03g0576500 OsJ_11519 OSNPB_030576500 ENOG411E54S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Dof zinc finger protein 3 (OsDof3) (Prolamin box-binding factor) Q6K537 DOF3_ORYSJ DOF3 RPBF Os02g0252400 LOC_Os02g15350 OSJNBa0009N02.17 FUNCTION: Transcriptional activator that binds specifically to the DNA consensus core sequence 5'-AAAG-3' also known as prolamin box (PubMed:16798940). Can activate the expression of genes encoding for the seed storage proteins glutelin, prolamin and globulin. Functions synergistically with RISBZ/BZIP58 to positively regulate quantitatively many seed storage proteins (PubMed:16798940, PubMed:19473328). Functions synergistically with RISBZ1/BZIP58 to positively regulate some metabolic enzymes, such as alanine aminotransferase and pyruvate phosphate dikinase, that are expressed in developing seeds (PubMed:16798940). Functions synergistically with RISBZ1/BZIP58 to positively regulate genes that are key players in the development of aleurone layers (PubMed:19473328). Functions synergistically with RISBZ1/BZIP58 to positively regulate the glutelin GLUD-1 gene in endosperm of developing seeds (PubMed:18980953). Can activate the expression of the bifunctional lysine-degrading enzyme, lysine ketoglutarate reductase/saccharopine dehydrogenase (LKR/SDH), one of the key regulators determining free lysine content in plants (PubMed:21037241). In germinating seeds, involved in the gibberellin-mediated activation of the alpha-amylase AMY1.1/AMY1A gene (PubMed:14500792). {ECO:0000269|PubMed:14500792, ECO:0000269|PubMed:16798940, ECO:0000269|PubMed:18980953, ECO:0000269|PubMed:19473328, ECO:0000269|PubMed:21037241}. ENOG411E54Z RPS19 P39697 RT19_ARATH 40S ribosomal protein S19, mitochondrial FUNCTION: The RNA-binding domain found in RPS19 may functionally replaces the missing mitochondrial RPS13. 23636 40S ribosomal protein S19, mitochondrial mitochondrial small ribosomal subunit [GO:0005763]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:2171539; AT5G47320 Ribosomal protein S19 Ribosomal protein S19 P92813 P92813_ORYSJ rps19 ENOG411E54X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF72 NA NA NA NA NA NA NA ENOG411E54F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: plasma membrane NA NA NA NA NA NA NA ENOG411E54E Q84X05,A0A1P8B2G8,A0A1P8B2K7,F4IHX1,A0A1P8B2G3 Q84X05_ARATH,A0A1P8B2G8_ARATH,A0A1P8B2K7_ARATH,F4IHX1_ARATH,A0A1P8B2G3_ARATH Transmembrane protein (Uncharacterized protein At2g34530/T31E10.13),Transmembrane protein 32231,33395,37344,27287,24812 Transmembrane protein (Uncharacterized protein At2g34530/T31E10.13),Transmembrane protein integral component of membrane [GO:0016021] locus:2062298; AT2G34530 NA NA NA NA NA NA NA NA ENOG411E54C AP22.53 Q8LE56,Q680G2 Q8LE56_ARATH,Q680G2_ARATH HTH-type transcriptional regulator (Uncharacterized protein At4g37240) (Uncharacterized protein At4g37240/C7A10_120),HTH-type transcriptional regulator (Uncharacterized protein At2g23690) 18028,17648 HTH-type transcriptional regulator (Uncharacterized protein At4g37240) (Uncharacterized protein At4g37240/C7A10_120),HTH-type transcriptional regulator (Uncharacterized protein At2g23690) locus:2115145;,locus:2049018; AT4G37240,AT2G23690 NA NA NA NA NA NA NA NA ENOG411E54J T19F6.9 O22980 O22980_ARATH NADP-specific glutamate dehydrogenase (T19F6.9 protein) (Uncharacterized protein AT4g24110) 28606 NADP-specific glutamate dehydrogenase (T19F6.9 protein) (Uncharacterized protein AT4g24110) integral component of membrane [GO:0016021]; response to karrikin [GO:0080167] locus:2134946; AT4G24110 NA NA NA NA NA NA NA NA ENOG411E54H CCB3 Q8RWM7 CCB3_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic (YGGT family protein YLMG3) (YlmG homolog protein 3) (AtYLMG3) FUNCTION: Required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Controls the conversion of apocytochrome b6 to holocytochrome b6. Required for covalent binding of the c-type heme to cytochrome b6. {ECO:0000250|UniProtKB:Q9FJ81}. 18973 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic (YGGT family protein YLMG3) (YlmG homolog protein 3) (AtYLMG3) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; cytochrome b6f complex assembly [GO:0010190] locus:2158906; AT5G36120 YGGT family Os01g0966200 protein (cDNA clone:001-017-E01, full insert sequence) Q0JFR4 Q0JFR4_ORYSJ Os01g0966200 Os01g0966200 OsJ_04884 OSNPB_010966200 ENOG411E54I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0459500 protein A0A0N7KPZ0 A0A0N7KPZ0_ORYSJ Os08g0459500 OSNPB_080459500 ENOG411EM4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAF domain NA NA NA NA NA NA NA ENOG411DUS9 FBL3 Q8RWU5 FBL3_ARATH F-box/LRR-repeat protein 3 72275 F-box/LRR-repeat protein 3 locus:2149805; AT5G01720 F-box LRR-repeat protein Os12g0108500 protein (Fragment),Os11g0108932 protein A0A0P0Y6A8,A0A0P0XXV9 A0A0P0Y6A8_ORYSJ,A0A0P0XXV9_ORYSJ Os12g0108500 OSNPB_120108500,Os11g0108932 OSNPB_110108932 ENOG411DUS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) Expressed protein (Os03g0806700 protein) (cDNA clone:001-043-H06, full insert sequence),Os07g0572300 protein (cDNA clone:J033074P14, full insert sequence) Q84M57,Q6YTU4 Q84M57_ORYSJ,Q6YTU4_ORYSJ LOC_Os03g59200 Os03g0806700 OSJNBa0059E14.19 OSNPB_030806700,Os07g0572300 Os07g0572300 OJ1121_A05.24 OsJ_24817 OSNPB_070572300 ENOG411DUS0 TEB Q588V7 TEB_ARATH Helicase and polymerase-containing protein TEBICHI (EC 3.6.4.-) DISRUPTION PHENOTYPE: Morphological defects including short roots, abnormal phyllotaxy with defects in adaxial-abaxial polarity of leaves, highly serrated and asymmetric leaves, and fasciation, as well as defective patterns of cell division and differentiation in meristems and during embryogenesis. Constitutively activated DNA damage responses associated with a defect in G2/M cell cycle progression, but no activation of transcriptionally silenced genes. Hypersensitive to DNA-damaging agents such as the DNA cross-linking agent mitomycin C (MMC) and the DNA-alkylating agent methyl-methane sulfonate (MMS). Reduced frequency of intrachromosomal homologous recombination. {ECO:0000269|PubMed:16517762, ECO:0000269|PubMed:19696887}. No visible phenotype.,Similar to teb-1 with a typical short-root phenotype and the aerial system that is reduced in size with highly serrated and asymmetric leaves and a fasciated stem.,A short-root phenotype with the phenotype in the aerial part that is similar to those of the tsk mutant. The roots in mutant seedlings were approximately one-third as long as those from wild type plants. This reduced growth became more pronounced at later time points. The root apical meristem was disorganized and individual cell types such as QC or initial cells were difficult to discern. The aerial part of teb-1 plants also showed defects in morphology such as abnormal phyllotaxy highly serrated and asymmetric leaves and a fasciated stem. The cellular organization of the SAM was severely disturbed - L1 and L2 layers showed irregular cell division in mutant plants.,Embryonic phenotype: altered pattern of cell division became pronounced in mutant embryos at the early globular stage. Abnormal transverse cell division of the hypophysis and extra rounds of division of the suspensor cells. In the heart stage most of the teb-1 embryos showed an asymmetric and misshaped morphology as well as an aberrant cell division pattern especially in the hypophysis descendents in the root pole.,Sensitive to DNA damaging agent (0.2 mg.l MMS); mutant roots were half of that on control medium without MMC. Short roots; Serrated leaves; Fasciated stems and inflorescences-A. Morikami-2006 FUNCTION: Required for regulated cell division and differentiation in meristems and embryos, thus modulating adaxial-abaxial polarity. Regulates the progression of cell cycle and DNA replication (e.g. G2/M progression and intrachromosomal recombination) and the expression of genes during development, especially genes nearby the Helitron transposons. {ECO:0000269|PubMed:16517762, ECO:0000269|PubMed:19696887}. MISCELLANEOUS: 'Tebichi' means the 'cloven hoof of a pig' in the regional dialect of the southernmost area of Japan. {ECO:0000305|PubMed:16517762}. R-ATH-5685939; 3.6.4.- 238523 Helicase and polymerase-containing protein TEBICHI (EC 3.6.4.-) cytoplasm [GO:0005737]; 5'-3' exonuclease activity [GO:0008409]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; helicase activity [GO:0004386]; cell cycle [GO:0007049]; cell division [GO:0051301]; DNA-dependent DNA replication [GO:0006261]; intrachromosomal DNA recombination [GO:1990067]; meristem structural organization [GO:0009933]; photomorphogenesis [GO:0009640]; regulation of adaxial/abaxial pattern formation [GO:2000011]; regulation of cell cycle G2/M phase transition [GO:1902749]; regulation of gene expression [GO:0010468] TISSUE SPECIFICITY: Mostly expressed in flower buds and flowers, and, to a lower extent, in leaves, stems, seedlings, roots and siliques. {ECO:0000269|PubMed:16517762}. locus:2125677; AT4G32700 DNA polymerase Os12g0291000 protein A0A0P0Y964 A0A0P0Y964_ORYSJ Os12g0291000 OSNPB_120291000 ENOG411DUS3 Q8RX60 Q8RX60_ARATH At1g79720 (At1g79720/F19K16_30) (Eukaryotic aspartyl protease family protein) (Uncharacterized protein At1g79720/F19K16_30) 52396 At1g79720 (At1g79720/F19K16_30) (Eukaryotic aspartyl protease family protein) (Uncharacterized protein At1g79720/F19K16_30) apoplast [GO:0048046]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2017799; AT1G79720 aspartic proteinase Os08g0267300 protein (Putative 41 kD chloroplast nucleoid DNA binding protein),Os09g0423500 protein (Putative nucleoid DNA-binding protein cnd41, chloroplast) (cDNA clone:002-186-C07, full insert sequence) Q6YTJ6,Q69P39 Q6YTJ6_ORYSJ,Q69P39_ORYSJ Os08g0267300 OSJNBa0023I13.45 OSNPB_080267300,Os09g0423500 OJ1740_D06.46 OsJ_29412 OSNPB_090423500 P0418B08.17 ENOG411EM42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os08g0180500 protein (Fragment) A0A0P0XCT6 A0A0P0XCT6_ORYSJ Os08g0180500 OSNPB_080180500 ENOG411EM41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED Os04g0628400 protein (cDNA clone:J023128I11, full insert sequence),Os04g0628400 protein (Fragment) Q0J9W3,A0A0P0WF34 Q0J9W3_ORYSJ,A0A0P0WF34_ORYSJ Os04g0628400 Os04g0628400 OSNPB_040628400,Os04g0628400 OSNPB_040628400 ENOG411DUSJ SKU5 Q9SU40 SKU5_ARATH Monocopper oxidase-like protein SKU5 (Skewed roots) Skewed root growth on tilted agar surface-C. Somerville-2002 FUNCTION: May be a monocopper oxidase of unknown specificity. Involved in directional growth processes, possibly by participating in cell wall expansion. ARA:GQT-1915-MONOMER; 65638 Monocopper oxidase-like protein SKU5 (Skewed roots) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; cell wall [GO:0005618]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; cell tip growth [GO:0009932] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, stems and flowers. {ECO:0000269|PubMed:12119380}. locus:2135535; AT4G12420 monocopper oxidase-like protein Os08g0154250 protein (Putative pectinesterase),Os06g0104300 protein (Putative Bplo) (cDNA clone:J033095A13, full insert sequence),Os10g0508000 protein Q84ZL7,Q9LX04,A0A0P0XW31 Q84ZL7_ORYSJ,Q9LX04_ORYSJ,A0A0P0XW31_ORYSJ OJ1066_B03.120 OJ1349_D05.141 Os08g0154250 OSNPB_080154250,Os06g0104300 OsJ_19821 OSNPB_060104300 P0644B06.1,Os10g0508000 OSNPB_100508000 ENOG411DUSK Q8GX84,Q9FNG6 C3H1_ARATH,C3H51_ARATH Zinc finger CCCH domain-containing protein 1 (AtC3H1),Zinc finger CCCH domain-containing protein 51 (AtC3H51) 38710,42460 Zinc finger CCCH domain-containing protein 1 (AtC3H1),Zinc finger CCCH domain-containing protein 51 (AtC3H51) U2-type spliceosomal complex [GO:0005684]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA cis splicing, via spliceosome [GO:0045292]; snoRNA splicing [GO:0034247],membrane [GO:0016020]; U2-type spliceosomal complex [GO:0005684]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA cis splicing, via spliceosome [GO:0045292]; snoRNA splicing [GO:0034247] locus:2035377;,locus:2164320; AT1G01350,AT5G06420 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 15 (OsC3H15),Os02g0301000 protein (Fragment) Q6K4V3,A0A0P0VI06 C3H15_ORYSJ,A0A0P0VI06_ORYSJ Os02g0301000 LOC_Os02g19804 OSJNBa0010K08.8-1,Os02g0301000 OSNPB_020301000 ENOG411DUSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os06g0156600 protein (Putative esterase) (Putative lipase) (cDNA clone:001-044-H08, full insert sequence) (cDNA clone:006-202-C04, full insert sequence) (cDNA clone:J033093M11, full insert sequence) Q5VMA5 Q5VMA5_ORYSJ KMK0024M20.9 Os06g0156600 OSJNBa0085L11.37 OSNPB_060156600 P0046E09.15 ENOG411DUSC T15C9_40 F4IUY1,Q9M2W0,A0A1P8B0U3,A0A1I9LPM7 F4IUY1_ARATH,Q9M2W0_ARATH,A0A1P8B0U3_ARATH,A0A1I9LPM7_ARATH CAP-gly domain linker,CAP-gly domain linker (Centromere protein-like) 97061,102874,93251,94871 CAP-gly domain linker,CAP-gly domain linker (Centromere protein-like) vacuole [GO:0005773] locus:2056053;,locus:2097243; AT2G39300,AT3G55060 NA Os03g0322000 protein (Fragment),Os07g0686400 protein Q0DSA9,A0A0P0XAI0 Q0DSA9_ORYSJ,A0A0P0XAI0_ORYSJ Os03g0322000 OSNPB_030322000,Os07g0686400 OSNPB_070686400 ENOG411DUSX HSFA4A,HSFA4C,RHA1 O49403,Q9FK72,Q3E8G3 HFA4A_ARATH,HFA4C_ARATH,Q3E8G3_ARATH Heat stress transcription factor A-4a (AtHsfA4a) (AtHsf-15) (Heat shock factor protein 21) (HSF 21) (Heat shock transcription factor 21) (HSTF 21),Heat stress transcription factor A-4c (AtHsfA4c) (AtHsf-20) (Protein ROOT HANDEDNESS 1),Winged-helix DNA-binding transcription factor family protein DISRUPTION PHENOTYPE: Plants display minimal right-handed slanting in roots, reduced gravitropic response, reduced number of lateral roots, reduced size of shoot and root in the seedlings and increased resistance to 2,4-D. {ECO:0000269|PubMed:18381353}. Reduced root gravitropism; Insensitive to auxin-F. Migliaccio-2008 FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).,FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}. R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 46245,39648,28429 Heat stress transcription factor A-4a (AtHsfA4a) (AtHsf-15) (Heat shock factor protein 21) (HSF 21) (Heat shock transcription factor 21) (HSTF 21),Heat stress transcription factor A-4c (AtHsfA4c) (AtHsf-20) (Protein ROOT HANDEDNESS 1),Winged-helix DNA-binding transcription factor family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; response to reactive oxygen species [GO:0000302]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; fruit morphogenesis [GO:0048530]; lateral root development [GO:0048527]; positive gravitropism [GO:0009958]; response to auxin [GO:0009733]; response to heat [GO:0009408]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in roots, seedlings and at lower levels in leaves. {ECO:0000269|PubMed:18381353}. locus:2117139;,locus:2172003; AT4G18880,AT5G45710 heat stress transcription factor Heat stress transcription factor A-4b (Heat stress transcription factor 4) (OsHsf-04) (Heat stress transcription factor 9) (rHsf9) Q94J16 HFA4B_ORYSJ HSFA4B HSF04 HSF9 Os01g0749300 LOC_Os01g54550 OsJ_03456 P0481E12.39 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DUST NPC4,NPC5,NPC3 Q9SRQ7,Q9S816,Q9SRQ6,A0A1I9LPZ5 NPC4_ARATH,NPC5_ARATH,NPC3_ARATH,A0A1I9LPZ5_ARATH Non-specific phospholipase C4 (EC 3.1.4.3),Non-specific phospholipase C5 (EC 3.1.4.3),Non-specific phospholipase C3 (EC 3.1.-.-),Non-specific phospholipase C3 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants display decreased ABA sensitivity in seed germination, root elongation, and stomatal movement and have decreased tolerance to high salinity and water deficiency. Root hair elongation defects under low inorganic phosphate conditions. {ECO:0000269|PubMed:15618226, ECO:0000269|PubMed:20507939, ECO:0000269|PubMed:20699393, ECO:0000269|PubMed:21525137, ECO:0000269|PubMed:23432399}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants accumulates reduced levels of digalactosyldiacylglycerol (DGDG) during phosphate limitation. {ECO:0000269|PubMed:18564386}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20507939}. Sensitive to drought and salt; Insensitive to ABA-X. Wang-2010 FUNCTION: Non-specific phospholipase C (PLC) which assumes major PLC activity during inorganic phosphate starvation. Substrate preference is phosphatidylcholine (PC), but can also hydrolyze phosphatidylethanolamine (PE) with lower efficiency. Has no activity toward phosphatidic acid (PA). Plays an important role in the supply of both inorganic phosphate and diacylglycerol from membrane-localized phospholipids during phosphate deprivation. May be required for lipid-derived signaling molecules that positively modulate abscisic acid (ABA) response and promote plant tolerance to drought and salt stresses. May be involved in brassinolide-mediated signaling in root development. {ECO:0000269|PubMed:15618226, ECO:0000269|PubMed:20507939, ECO:0000269|PubMed:20699393, ECO:0000269|PubMed:21525137}.,FUNCTION: Non-specific phospholipase C (PLC) which assumes minor PLC activity during inorganic phosphate starvation. Can hydrolyze both phosphatidylcholine (PC) and phosphatidylethanolamine (PE). Required for normal accumulation of digalactosyldiacylglycerol (DGDG) during phosphate limitation and may contribute to the conversion of phospholipids to diacylglycerol, the substrate for galactolipid synthesis. {ECO:0000269|PubMed:18564386}.,FUNCTION: Possesses specific phosphatase activity toward lysophosphatidic acid (LPA) in vitro. Does not show phospholipase C activity. May play a role in signal transduction and storage lipid synthesis. May be involved in brassinolide-mediated signaling in root development. {ECO:0000269|PubMed:20045079, ECO:0000269|PubMed:20507939}. ARA:AT3G03530-MONOMER;MetaCyc:AT3G03530-MONOMER;,ARA:AT3G03540-MONOMER;MetaCyc:AT3G03540-MONOMER;,ARA:AT3G03520-MONOMER; 3.1.4.3; Glycerophospholipid metabolism (00564),Ether lipid metabolism (00565),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.4.3,3.1.-.- 60723,59071,59097,47382 Non-specific phospholipase C4 (EC 3.1.4.3),Non-specific phospholipase C5 (EC 3.1.4.3),Non-specific phospholipase C3 (EC 3.1.-.-),Non-specific phospholipase C3 plasma membrane [GO:0005886]; acid phosphatase activity [GO:0003993]; phosphatidylcholine phospholipase C activity [GO:0034480]; phospholipase C activity [GO:0004629]; phospholipid catabolic process [GO:0009395],cytosol [GO:0005829]; acid phosphatase activity [GO:0003993]; phosphatidylcholine phospholipase C activity [GO:0034480]; phospholipase C activity [GO:0004629]; cellular response to phosphate starvation [GO:0016036]; glycolipid biosynthetic process [GO:0009247]; phospholipid catabolic process [GO:0009395],membrane [GO:0016020]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; acid phosphatase activity [GO:0003993]; lysophosphatidic acid phosphatase activity [GO:0052642]; cellular response to phosphate starvation [GO:0016036]; phosphate-containing compound metabolic process [GO:0006796]; phospholipid catabolic process [GO:0009395],hydrolase activity, acting on ester bonds [GO:0016788]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in root tips, cotyledons, on leaf margins, stems, young anthers and funiculus. {ECO:0000269|PubMed:20507939}.,TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:20507939}.,TISSUE SPECIFICITY: Expressed in root tips, cotyledons, on leaf margins, stems, young anthers and funiculus. {ECO:0000269|PubMed:20045079, ECO:0000269|PubMed:20507939}. locus:2099639;,locus:2096384;,locus:2099654; AT3G03530,AT3G03540,AT3G03520 phospholipase C Os03g0852800 protein A0A0P0W6H3 A0A0P0W6H3_ORYSJ Os03g0852800 OSNPB_030852800 ENOG411DUSU MLO1 O49621 MLO1_ARATH MLO-like protein 1 (AtMlo1) (MLO protein homolog 1) (AtMlo-H1) FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}. 59126 MLO-like protein 1 (AtMlo1) (MLO protein homolog 1) (AtMlo-H1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2132313; AT4G02600 May be involved in modulation of pathogen defense and leaf cell death (By similarity) MLO-like protein,Os05g0418100 protein,Os01g0888600 protein (Fragment) Q8L426,A0A0P0WMN4,A0A0P0VBG4 Q8L426_ORYSJ,A0A0P0WMN4_ORYSJ,A0A0P0VBG4_ORYSJ Os01g0888600 MLO Os01g0888600 B1099D03.30 OsJ_04347 OSNPB_010888600 P0434C04.50,Os05g0418100 OSNPB_050418100,Os01g0888600 OSNPB_010888600 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. ENOG411DUSV RTL2,RTL3 Q9LTQ0,Q9FKF0,A0A1P8BB87 RTL2_ARATH,RTL3_ARATH,A0A1P8BB87_ARATH Ribonuclease 3-like protein 2 (EC 3.1.26.-) (Ribonuclease III-like protein 2) (RNase III-like protein 2) (Ribonuclease three-like protein 2),Ribonuclease 3-like protein 3 (EC 3.1.26.-) (Ribonuclease III-like protein 3) (RNase III-like protein 3) (Ribonuclease three-like protein 3),RNAse THREE-like protein 3 FUNCTION: Ribonuclease that cleaves double-stranded RNA (dsRNA). Required for 3'-external transcribed spacer (ETS) cleavage of the pre-rRNA precursors. May promote the production of 21 nucleotide small interfering RNA (siRNA) during post-transcriptional gene silencing (PTGS). {ECO:0000269|PubMed:18158302, ECO:0000269|PubMed:20978817}.,FUNCTION: Ribonuclease that cleaves double-stranded RNA (dsRNA). {ECO:0000250}. 3.1.26.- 44109,108300,85904 Ribonuclease 3-like protein 2 (EC 3.1.26.-) (Ribonuclease III-like protein 2) (RNase III-like protein 2) (Ribonuclease three-like protein 2),Ribonuclease 3-like protein 3 (EC 3.1.26.-) (Ribonuclease III-like protein 3) (RNase III-like protein 3) (Ribonuclease three-like protein 3),RNAse THREE-like protein 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; RISC complex [GO:0016442]; metal ion binding [GO:0046872]; ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; production of siRNA involved in RNA interference [GO:0030422]; rRNA processing [GO:0006364],cytoplasm [GO:0005737]; nucleus [GO:0005634]; RISC complex [GO:0016442]; ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; production of siRNA involved in RNA interference [GO:0030422],ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; RNA processing [GO:0006396] DEVELOPMENTAL STAGE: Expressed in siliques from 0 to 10 days after fertilization (DAF). Levels decrease at 13 DAF and disappear at 16 DAF. Expressed early in seed germination from 6 hours to 48 hours after seed imbibition. {ECO:0000269|PubMed:18158302}. TISSUE SPECIFICITY: Expressed in seeds, leaves and flower buds. {ECO:0000269|PubMed:18158302}. locus:2092409;,locus:2153333; AT3G20420,AT5G45150 Ribonuclease 3-like protein Ribonuclease 3-like protein 1 (EC 3.1.26.-) (Ribonuclease III-like protein 1) (RNase III-like protein 1) Q5JK90 RTL1_ORYSJ Os01g0551100 LOC_Os01g37050 OSJNBa0024F24.33 OSJNBa0066C06.2 FUNCTION: Cleaves double-stranded RNA (dsRNA). {ECO:0000250}. ENOG411DUSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalase Os04g0473900 protein A0A0P0WBK1 A0A0P0WBK1_ORYSJ Os04g0473900 OSNPB_040473900 ENOG411DUSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF525) Os05g0170800 protein Q65XS0 Q65XS0_ORYSJ Os05g0170800 Os05g0170800 OSNPB_050170800 P0685E10.9 ENOG411DUSS BETA-OHASE 1,BETA-OHASE 2 Q9SZZ8,Q9LTG0 BCH1_ARATH,BCH2_ARATH Beta-carotene 3-hydroxylase 1, chloroplastic (AtB1) (EC 1.14.13.129),Beta-carotene 3-hydroxylase 2, chloroplastic (AtB2) (EC 1.14.13.129) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal light conditions; due to redundancy with BCH2. Bch1 and bch2 double mutant has no visible phenotype but lower levels of beta, beta-xanthophylls and increased beta-carotene and lutein. Cyp97c1, bch1 and bch2 triple mutant is paler and smaller than wild-type. {ECO:0000269|PubMed:12782726, ECO:0000269|PubMed:16890225}.,DISRUPTION PHENOTYPE: No visible phenotype when grown under normal light conditions; due to the redundancy with BCH1. Bch1 and bch2 double mutant has no visible phenotype, but lower levels of beta, beta-xanthophylls and increased beta-carotene and lutein. Cyp97c1, bch1 and bch2 triple mutant is paler and smaller than wild-type. {ECO:0000269|PubMed:12782726, ECO:0000269|PubMed:16890225}. Chlorophyll a/b ratio does not differ significantly from that of wildtype.,In leaves 30% and 45% decrease in violaxanthine and neoxanthine respectively and 18% increase in lutein compared to wildtype. &,In seeds lutein content is unchanged; zeaxanthin violaxanthin and neoxanthin are decreased; antheraxanthin is increased (all relative to wildtype). Increase total level of β-carotene-derived xanthophylls.,Level of total carotenoid not significantly different from wild-type.,No visible phenotype.,In leaves &,In seeds carotenoids levels were reduced to 40% of those of wildtype. &,Non-photochemical quenching (NPQ) reduced to a much greater extent in both induction and amplitude compared to either single mutants.,Reduced conversion of &,Contains high levels of lutein.,No trace of β-carotene-derived xanthophylls.,In leaves 25% increase in zeinoxanthin levels; 25% and 35% reduction in violaxanthin and lutein respectively; %beta;-Carotene increased by 35%; all in relation to single mutant lut1-2.,In seeds similar amounts of carotenoids relative to lut1 b2. Intermediate compared to Col and Ws parents. Higher levels of lutein compared to lut1 b2.,20% less total carotenoids on a fresh weight basis compared to wildtype.,Chlorophyll a/b ratio is significantly higher than that of other genotypes.,In leaves: dramatic alteration in carotenoid composition: more than twice the levels of &,In seeds total carotenoid levels 35% lower than that of lut1 b1 and lut1 b2 but lutein still accounts for 80% of total carotenoids. Most &,Smaller and paler than either parental wild-type ecotypes (Col and Ws).,Very rapid initial induction of non-photochemical quenching (NPQ) but NPQ level was greatly reduced compared to wildtype levels and all other genotypes.,Completely lacks lutein.,Significant reduction of hydroxylated β-rings xanthophylls.,In leaves apart from small decrease in neoxanthine carotenoid composition not significantly altered compared to wildtype. &,In seeds 10% decrease in lutein content nearly twofold increase in antheraxanthin and 30% increase in zeaxanthin. Vialaxanthin and neoxanthin not significantly different from wildtype. Increase total level of &,In leaves the only carotenoids significantly changed in the double mutant were &,In seeds similar amounts of carotenoids relative to lut1 b1. Intermediate compared to Col and Ws parents. Greater levels of individual and total & FUNCTION: Nonheme diiron monooxygenase involved in the biosynthesis of xanthophylls. Specific for beta-ring hydroxylations of beta-carotene. Has also a low activity toward the beta- and epsilon-rings of alpha-carotene. No activity with acyclic carotenoids such as lycopene and neurosporene. Uses ferredoxin as an electron donor. {ECO:0000269|PubMed:8798688, ECO:0000305|PubMed:12782726, ECO:0000305|PubMed:16890225, ECO:0000305|PubMed:19147649}.,FUNCTION: Nonheme diiron monooxygenase involved in the biosynthesis of xanthophylls. Specific for beta-ring hydroxylations of beta-carotene. Has also a low activity toward the beta- and epsilon-rings of alpha-carotene. No activity with acyclic carotenoids such as lycopene and neurosporene. Uses ferredoxin as an electron donor. {ECO:0000305|PubMed:11587509, ECO:0000305|PubMed:12782726, ECO:0000305|PubMed:16890225, ECO:0000305|PubMed:19147649}. MISCELLANEOUS: A protein lacking the first 69 amino acids has a normal in vitro activity, while a protein lacking 129 N-terminal amino acids produces predominantly the monohydroxy intermediate beta-cryptoxanthin. ARA:AT4G25700-MONOMER;MetaCyc:AT4G25700-MONOMER;,ARA:AT5G52570-MONOMER;MetaCyc:AT5G52570-MONOMER; 1.14.13.129; 1.14.13.129 34361,33777 Beta-carotene 3-hydroxylase 1, chloroplastic (AtB1) (EC 1.14.13.129),Beta-carotene 3-hydroxylase 2, chloroplastic (AtB2) (EC 1.14.13.129) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; xanthophyll biosynthetic process [GO:0016123] TISSUE SPECIFICITY: Expressed in leaves, flowers, stems, roots and siliques. {ECO:0000269|PubMed:11587509}. locus:2131381;,locus:2149599; AT4G25700,AT5G52570 Beta-carotene hydroxylase Beta-carotene hydroxylase, putative, expressed (Os10g0533500 protein) (Putative beta-carotene hydroxylase),Beta-carotene hydroxylase, putative, expressed (Os03g0125100 protein),OSJNBa0011J08.7 protein (Os04g0578400 protein) (cDNA clone:001-022-E08, full insert sequence) Q8LN34,Q10SE7,Q7XQ82 Q8LN34_ORYSJ,Q10SE7_ORYSJ,Q7XQ82_ORYSJ Os10g0533500 LOC_Os10g38940 Os10g0533500 OsJ_32266 OSJNBa0053C23.24 OSNPB_100533500,Os03g0125100 LOC_Os03g03370 OSNPB_030125100,Os04g0578400 Os04g0578400 OSJNBa0011J08.7 OSNPB_040578400 ENOG411EHK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) NA NA NA NA NA NA NA ENOG411E9KK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family NA NA NA NA NA NA NA ENOG411E9KJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0271400 protein (Fragment) A0A0P0WVF9 A0A0P0WVF9_ORYSJ Os06g0271400 OSNPB_060271400 ENOG411E9KI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain F-box protein interaction domain containing protein, expressed (Os10g0567900 protein),F-box domain containing protein, expressed (Os10g0566300 protein) Q108X5,Q7XC13 Q108X5_ORYSJ,Q7XC13_ORYSJ Os10g0567900 LOC_Os10g41838 OSNPB_100567900,OSJNBa0057L21.4 LOC_Os10g41650 Os10g0566300 OsJ_32500 OSNPB_100566300 ENOG411E9KH F18K10.4 Q7G8T1,Q84K31 Q7G8T1_ARATH,Q84K31_ARATH C2H2-type zinc finger family protein (F18K10.4 protein) (Uncharacterized protein At3g10470) (Uncharacterized protein F13M14.25),C2H2-type zinc finger family protein (Putative zinc finger transcription factor) 42993,39794 C2H2-type zinc finger family protein (F18K10.4 protein) (Uncharacterized protein At3g10470) (Uncharacterized protein F13M14.25),C2H2-type zinc finger family protein (Putative zinc finger transcription factor) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; nucleic acid binding [GO:0003676] locus:2075865;,locus:2179924; AT3G10470,AT5G04390 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E9KN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9KM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os05g0483900 protein,Os11g0444400 protein (Fragment) B9FKU1,A0A0P0Y1V8 B9FKU1_ORYSJ,A0A0P0Y1V8_ORYSJ Os05g0483900 OsJ_18975 OSNPB_050483900,Os11g0444400 OSNPB_110444400 ENOG411E9KC MRG2 Q4V3E2 MRG2_ARATH Protein MRG2 (MRG family protein 2) (Morf Related Gene 2) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with MRG1. Mrg1 and mrg2 double mutants are late-flowering under long-day growth conditions. {ECO:0000269|PubMed:25183522, ECO:0000269|PubMed:25211338}. FUNCTION: Chromatin remodeling factor. Acts as a 'reader' protein by binding to H3K4me3 and H3K36me3 to control histone H4 acetylation. Increases the transcriptional levels of the flowering time genes FLC and FT (PubMed:25183522, PubMed:25211338). Binds the chromatin at the FT promoter upon interaction with CO (PubMed:25211338). {ECO:0000269|PubMed:25183522, ECO:0000269|PubMed:25211338}. 37629 Protein MRG2 (MRG family protein 2) (Morf Related Gene 2) histone acetyltransferase complex [GO:0000123]; nucleus [GO:0005634]; euchromatin binding [GO:1990188]; chromatin remodeling [GO:0006338]; histone H4 acetylation [GO:0043967]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous (PubMed:25183522). Mainly expressed in the vasculature of cotyledons and leaves, and in roots and inflorescences (PubMed:25211338). {ECO:0000269|PubMed:25183522, ECO:0000269|PubMed:25211338}. locus:2024725; AT1G02740 MRG NA NA NA NA NA NA NA ENOG411E9KA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E9KG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9KF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0649500 protein,Os07g0649100 protein,Os07g0648233 protein,Os07g0648900 protein,Os07g0649300 protein Q0D429,A0A0P0X9S0,A0A0P0X9H2,A0A0P0X9F9,A0A0P0X9E9 Q0D429_ORYSJ,A0A0P0X9S0_ORYSJ,A0A0P0X9H2_ORYSJ,A0A0P0X9F9_ORYSJ,A0A0P0X9E9_ORYSJ Os07g0649500 Os07g0649500 OSNPB_070649500,Os07g0649100 OSNPB_070649100,Os07g0648233 OSNPB_070648233,Os07g0648900 OSNPB_070648900,Os07g0649300 OSNPB_070649300 ENOG411E9KE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0152950 protein Q5ZD67 Q5ZD67_ORYSJ Os01g0152950 Os01g0152950 OsJ_00411 OSNPB_010152950 P0009G03.38 P0030H07.17 ENOG411E9KD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EHK2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411E9KY ENT7 Q944P0 ENT7_ARATH Equilibrative nucleotide transporter 7 (AtENT7) (Nucleoside transporter ENT7) FUNCTION: Nucleoside tranpsorter that can mediate uptake of adenosine, uridine, guanosine or cytidine when expressed in a heterologous system (yeast). {ECO:0000269|PubMed:15228386}. 45735 Equilibrative nucleotide transporter 7 (AtENT7) (Nucleoside transporter ENT7) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nucleoside transmembrane transporter activity [GO:0005337]; nucleoside transport [GO:0015858] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:12810710}. locus:2200893; AT1G61630 Nucleoside transporter NA NA NA NA NA NA NA ENOG411E9KX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flavonol synthase flavanone 3-hydroxylase-like NA NA NA NA NA NA NA ENOG411EHK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XS domain NA NA NA NA NA NA NA ENOG411E9KS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubisco LSMT substrate-binding NA NA NA NA NA NA NA ENOG411E9KR SPP1,SPP3B,SPP2 Q9C8J4,Q93XN8,Q9SJ66,A0A1P8AT44,A0A1I9LQG4,A0A1I9LQG1 SPP1_ARATH,SPP3B_ARATH,SPP2_ARATH,A0A1P8AT44_ARATH,A0A1I9LQG4_ARATH,A0A1I9LQG1_ARATH Probable sucrose-phosphatase 1 (AtSPP1) (EC 3.1.3.24),Probable sucrose-phosphatase 3b (AtSPP3b) (EC 3.1.3.24),Probable sucrose-phosphatase 2 (AtSPP2) (EC 3.1.3.24),Sucrose-phosphatase 1,Sucrose-6F-phosphate phosphohydrolase 2 FUNCTION: Catalyzes the final step of sucrose synthesis. {ECO:0000250}. PATHWAY: Glycan biosynthesis; sucrose biosynthesis; sucrose from D-fructose 6-phosphate and UDP-alpha-D-glucose: step 2/2. ARA:AT1G51420-MONOMER;,ARA:AT3G52340-MONOMER;,ARA:AT2G35840-MONOMER; 3.1.3.24 47846,48678,47855,47977,50016,53356 Probable sucrose-phosphatase 1 (AtSPP1) (EC 3.1.3.24),Probable sucrose-phosphatase 3b (AtSPP3b) (EC 3.1.3.24),Probable sucrose-phosphatase 2 (AtSPP2) (EC 3.1.3.24),Sucrose-phosphatase 1,Sucrose-6F-phosphate phosphohydrolase 2 vacuolar membrane [GO:0005774]; magnesium ion binding [GO:0000287]; sucrose-phosphate phosphatase activity [GO:0050307]; transferase activity, transferring glycosyl groups [GO:0016757]; sucrose biosynthetic process [GO:0005986],cytosol [GO:0005829]; magnesium ion binding [GO:0000287]; sucrose-phosphate phosphatase activity [GO:0050307]; transferase activity, transferring glycosyl groups [GO:0016757]; sucrose biosynthetic process [GO:0005986],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; magnesium ion binding [GO:0000287]; sucrose-phosphate phosphatase activity [GO:0050307]; transferase activity, transferring glycosyl groups [GO:0016757]; response to cadmium ion [GO:0046686]; sucrose biosynthetic process [GO:0005986],magnesium ion binding [GO:0000287]; sucrose-phosphate phosphatase activity [GO:0050307]; sucrose biosynthetic process [GO:0005986] locus:2033893;,locus:2100544;,locus:2039295; AT1G51420,AT3G52340,AT2G35840 Sucrose-6-phosphate phosphohydrolase C-terminal NA NA NA NA NA NA NA ENOG411E9KQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9KP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulase (glycosyl hydrolase family 5) NA NA NA NA NA NA NA ENOG411E9KW CYP79C2 Q9LQB7,Q3E7Q8 Q9LQB7_ARATH,Q3E7Q8_ARATH Cytochrome P450, putative (Cytochrome p450 79c2) (F19C14.12 protein),Cytochrome P450 superfamily protein ARA:AT1G58260-MONOMER;,ARA:AT1G58265-MONOMER; 60590,18022 Cytochrome P450, putative (Cytochrome p450 79c2) (F19C14.12 protein),Cytochrome P450 superfamily protein membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; glucosinolate biosynthetic process [GO:0019761]; indoleacetic acid biosynthetic process [GO:0009684] locus:2015282;,locus:1005716761; AT1G58260,AT1G58265 Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9KV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411E9KU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: (LipO)protein NA NA NA NA NA NA NA ENOG411E9KT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os04g0629600 protein (cDNA clone:J023062I06, full insert sequence) Q0J9V4 Q0J9V4_ORYSJ Os04g0629600 Os04g0629600 OSNPB_040629600 ENOG411EHK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3445) NA NA NA NA NA NA NA ENOG411EHK7 Q3EDD5 Q3EDD5_ARATH Nucleotide binding protein 8486 Nucleotide binding protein locus:1006230680; AT1G12805 NA NA NA NA NA NA NA NA ENOG411E9K9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411E9K8 F1I16_130 Q9M050 Q9M050_ARATH Replication factor C subunit, putative (DUF620) (Uncharacterized protein F1I16_130) 48119 Replication factor C subunit, putative (DUF620) (Uncharacterized protein F1I16_130) response to karrikin [GO:0080167] locus:2078946; AT3G55720 Protein of unknown function (DUF620) NA NA NA NA NA NA NA ENOG411EHK4 GATA23 Q8LC59 GAT23_ARATH GATA transcription factor 23 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 13239 GATA transcription factor 23 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; lateral root development [GO:0048527]; response to light stimulus [GO:0009416] locus:2148558; AT5G26930 ZnF_GATA NA NA NA NA NA NA NA ENOG411E9K3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS-box transcription factor 3 NA NA NA NA NA NA NA ENOG411E9K2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:GSPII_E NA NA NA NA NA NA NA ENOG411E9K1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ShK domain-like NA NA NA NA NA NA NA ENOG411E9K7 TCP10 O82277 TCP10_ARATH Transcription factor TCP10 FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. 40379 Transcription factor TCP10 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; positive regulation of development, heterochronic [GO:0045962]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of heart-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Mostly detected in lateral organs, such as leaves and flowers. Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and immature siliques. {ECO:0000269|PubMed:11158442, ECO:0000269|PubMed:17307931}. locus:2055861; AT2G31070 TCP family transcription factor NA NA NA NA NA NA NA ENOG411E9K6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411E9K5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9K4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EHKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Haloacid dehalogenase-like hydrolase family protein NA NA NA NA NA NA NA ENOG411EHKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basal layer antifungal peptide (BAP) NA NA NA NA NA NA NA ENOG411EHKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX2J XPT,GPT1,GPT2 Q9LF61,O81514,Q9M5A9,Q94B38,A0A1P8AN56 XPT_ARATH,GPTP1_ARATH,GPT1_ARATH,GPT2_ARATH,A0A1P8AN56_ARATH Xylulose 5-phosphate/phosphate translocator, chloroplastic (Xul-5-P/phosphate translocator),Putative glucose-6-phosphate/phosphate-translocator-like protein 1,Glucose-6-phosphate/phosphate translocator 1, chloroplastic,Glucose-6-phosphate/phosphate translocator 2, chloroplastic,Glucose-6-phosphate/phosphate translocator 2 DISRUPTION PHENOTYPE: Gametophytic lethal phenotype in homozygous plants. {ECO:0000269|PubMed:15722468}. Male and female gametophyte defective; Embryo defective (inferred)-A. Schneider-2005 FUNCTION: Sugar phosphate/phosphate translocator that transports inorganic phosphate, triose phosphate, 3-phosphoglycerate, xylulose 5-phosphate (Xul-5-P) and to a lesser extent ribulose 5-phosphate. Does not transport ribose 5-phosphate or hexose phosphates. Provides cytosolic Xul-5-P to the chloroplast, where it is used as an intermediate in the plastidic pentose phosphate pathways. {ECO:0000269|PubMed:11842155}.,FUNCTION: Glucose 6-phosphate (Glc6P) transporter. Transports also inorganic phosphate, 3-phosphoglycerate, triose phosphates and, to a leser extent, phosphoenolpyruvate. Responsible for the transport of Glc6P into plastids of heterotrophic tissues where it can be used as a carbon source for starch biosynthesis, as substrate for fatty acid biosynthesis or as substrate for NADPH generation via the oxidative pentose phosphate pathway (OPPP). Required for pollen maturation and embryo sac development. {ECO:0000269|PubMed:15722468, ECO:0000269|PubMed:20659277}.,FUNCTION: Glucose 6-phosphate (Glc6P) transporter. Transports also inorganic phosphate, 3-phosphoglycerate, triose phosphates and, to a leser extent, phosphoenolpyruvate. Responsible for the transport of Glc6P into plastids of heterotrophic tissues where it can be used as a carbon source for starch biosynthesis, as substrate for fatty acid biosynthesis or as substrate for NADPH generation via the oxidative pentose phosphate pathway (OPPP). Required for dynamic acclimation of photosynthesis. {ECO:0000269|PubMed:15722468, ECO:0000269|PubMed:19939944, ECO:0000269|PubMed:20712627}. 45770,30602,42329,42754,45348 Xylulose 5-phosphate/phosphate translocator, chloroplastic (Xul-5-P/phosphate translocator),Putative glucose-6-phosphate/phosphate-translocator-like protein 1,Glucose-6-phosphate/phosphate translocator 1, chloroplastic,Glucose-6-phosphate/phosphate translocator 2, chloroplastic,Glucose-6-phosphate/phosphate translocator 2 chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; phosphoglycerate transmembrane transporter activity [GO:0015120]; triose-phosphate transmembrane transporter activity [GO:0071917]; phosphoglycerate transport [GO:0015713]; triose phosphate transmembrane transport [GO:0035436],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; glucose-6-phosphate transmembrane transporter activity [GO:0015152]; inorganic phosphate transmembrane transporter activity [GO:0005315]; phosphoglycerate transmembrane transporter activity [GO:0015120]; protein domain specific binding [GO:0019904]; triose-phosphate transmembrane transporter activity [GO:0071917]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; glucose-6-phosphate transport [GO:0015760]; lipid particle organization [GO:0034389]; phosphoenolpyruvate transport [GO:0015714]; phosphoglycerate transport [GO:0015713]; pollen maturation [GO:0010152]; response to nematode [GO:0009624]; triose phosphate transmembrane transport [GO:0035436]; vacuole organization [GO:0007033],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; glucose-6-phosphate transmembrane transporter activity [GO:0015152]; inorganic phosphate transmembrane transporter activity [GO:0005315]; phosphoglycerate transmembrane transporter activity [GO:0015120]; triose-phosphate transmembrane transporter activity [GO:0071917]; glucose-6-phosphate transport [GO:0015760]; phosphoenolpyruvate transport [GO:0015714]; phosphoglycerate transport [GO:0015713]; photosynthesis [GO:0015979]; photosynthetic acclimation [GO:0009643]; regulation of photosynthesis [GO:0010109]; response to glucose [GO:0009749]; response to karrikin [GO:0080167]; response to nematode [GO:0009624]; response to sucrose [GO:0009744]; triose phosphate transmembrane transport [GO:0035436],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] DEVELOPMENTAL STAGE: Expressed during the transient accumulation of starch in the developing seeds. Decline rapidly 8 days after flowering. Not detected in mature seeds. {ECO:0000269|PubMed:12084821, ECO:0000269|PubMed:15722468}. TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:11842155}.,TISSUE SPECIFICITY: Expressed in seeds, flowers, rosette leaves, and roots, with highest levels found in stamens. Found in the root cap, in guard cells and in mesophyll cells. {ECO:0000269|PubMed:15722468}.,TISSUE SPECIFICITY: Expressed in seeds, flowers, stamens, and rosette leaves, with highest levels found in sepals and senescing leaves. {ECO:0000269|PubMed:15722468}. locus:2151381;,locus:2136713;,locus:2160175;,locus:2036778; AT5G17630,AT4G03950,AT5G54800,AT1G61800 glucose-6-phosphate phosphate translocator Os07g0523400 protein (cDNA clone:J023045C15, full insert sequence),Os07g0523600 protein (Os07g0523965 protein) (Fragment),Glucose-6-phosphate/phosphate translocator (Os08g0187800 protein) (cDNA clone:001-023-E05, full insert sequence) B7EHD5,Q0D5Z0,Q6YZC3 B7EHD5_ORYSJ,Q0D5Z0_ORYSJ,Q6YZC3_ORYSJ Os07g0523400 OSNPB_070523400,Os07g0523965 Os07g0523600 OSNPB_070523600 OSNPB_070523965,Os08g0187800 B1099H05.2 OSNPB_080187800 P0020B10.26 ENOG411ED78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411ED79 JMJ19 Q8L7T6 JMJ19_ARATH Probable inactive lysine-specific demethylase JMJ19 (Jumonji domain-containing protein 19) (Protein JUMONJI 19) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20202164}. R-ATH-3214842; 79304 Probable inactive lysine-specific demethylase JMJ19 (Jumonji domain-containing protein 19) (Protein JUMONJI 19) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2064910; AT2G38950 transcription factor jumonji NA NA NA NA NA NA NA ENOG411ED72 MYB107 Q9LDI5,A0A1I9LP59 Q9LDI5_ARATH,A0A1I9LP59_ARATH At3g02940 (MYB transcription factor) (Myb domain protein 107) (Putative MYB family transcription factor) (Putative transcription factor),Myb domain protein 107 36628,35266 At3g02940 (MYB transcription factor) (Myb domain protein 107) (Putative MYB family transcription factor) (Putative transcription factor),Myb domain protein 107 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to salicylic acid [GO:0009751],DNA binding [GO:0003677] locus:2075387; AT3G02940 myb domain protein 107 NA NA NA NA NA NA NA ENOG411ED73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: C-type lectin domain family 16 member A NA NA NA NA NA NA NA ENOG411ED71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411ED76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DSBA-like thioredoxin domain NA NA NA NA NA NA NA ENOG411ED77 REM10 P0DH85 REM10_ARATH B3 domain-containing protein REM10 (Protein REPRODUCTIVE MERISTEM 10) 63258 B3 domain-containing protein REM10 (Protein REPRODUCTIVE MERISTEM 10) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2047241; AT2G24700 Transcriptional factor B3 family protein NA NA NA NA NA NA NA ENOG411ED74 GSTF5 Q9SRY6,A0A1P8ASP1,A0A1P8AST6 GSTF5_ARATH,A0A1P8ASP1_ARATH,A0A1P8AST6_ARATH Glutathione S-transferase F5 (AtGSTF5) (EC 2.5.1.18) (GST class-phi member 5),Glutathione S-transferase (Class phi) 5 FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G02940-MONOMER; 2.5.1.18 29849,32704,31428 Glutathione S-transferase F5 (AtGSTF5) (EC 2.5.1.18) (GST class-phi member 5),Glutathione S-transferase (Class phi) 5 cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],transferase activity [GO:0016740] locus:2024775; AT1G02940 Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411ED75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ArfGap NA NA NA NA NA NA NA ENOG411ED7J Q1PF20,Q9ZVC1,Q9SHZ9,B3H702 FBK34_ARATH,FBK42_ARATH,Q9SHZ9_ARATH,B3H702_ARATH F-box/kelch-repeat protein At2g22050,Putative F-box/kelch-repeat protein At2g41360,Galactose oxidase/kelch repeat protein (Uncharacterized protein At2g22060) (Uncharacterized protein At2g22060/T16B14.9),Galactose oxidase/kelch repeat superfamily protein 29410,42710,17012,29339 F-box/kelch-repeat protein At2g22050,Putative F-box/kelch-repeat protein At2g41360,Galactose oxidase/kelch repeat protein (Uncharacterized protein At2g22060) (Uncharacterized protein At2g22060/T16B14.9),Galactose oxidase/kelch repeat superfamily protein locus:2055929;,locus:2055934; AT2G22050,AT2G41360,AT2G22060 F-box domain NA NA NA NA NA NA NA ENOG411ED7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411ED7H A0A1P8B5X7,F4JU16 A0A1P8B5X7_ARATH,F4JU16_ARATH Glycosyltransferase (EC 2.4.2.-) 2.4.2.- 40578,43131 Glycosyltransferase (EC 2.4.2.-) Golgi membrane [GO:0000139]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2119827; AT4G19970 Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411ED7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411ED7C ATsEH Q42566,O48789 Q42566_ARATH,O48789_ARATH ATsEH (EC 3.3.2.9) (At2g26740/F18A8.11) (Epoxide hydrolase (ATsEH)) (Putative epoxide hydrolase ATsEH) (Soluble epoxide hydrolase),Alpha/beta-Hydrolases superfamily protein (Putative epoxide hydrolase) ARA:AT2G26740-MONOMER;,ARA:AT2G26750-MONOMER; R-ATH-2142670; 3.3.2.9 36424,36258 ATsEH (EC 3.3.2.9) (At2g26740/F18A8.11) (Epoxide hydrolase (ATsEH)) (Putative epoxide hydrolase ATsEH) (Soluble epoxide hydrolase),Alpha/beta-Hydrolases superfamily protein (Putative epoxide hydrolase) cytosol [GO:0005829]; cis-stilbene-oxide hydrolase activity [GO:0033961]; epoxide hydrolase activity [GO:0004301]; response to auxin [GO:0009733]; response to water deprivation [GO:0009414],hydrolase activity [GO:0016787] locus:2043868;,locus:2043808; AT2G26740,AT2G26750 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411ED7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kinase associated domain 1 Non-specific serine/threonine protein kinase (EC 2.7.11.1) Q6ZL03 Q6ZL03_ORYSJ Os07g0194100 OJ1118_E12.20 OJ1715_A07.1 OSNPB_070194100 ENOG411ED7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411ED7G ECT1 Q8W573,Q3MK94,F4J2E9 Q8W573_ARATH,Q3MK94_ARATH,F4J2E9_ARATH AT3g03950/T11I18_6 (Evolutionarily conserved C-terminal region 1),AT3G03950 protein (Evolutionarily conserved C-terminal region 1),Evolutionarily conserved C-terminal region 1 47812,48232,47944 AT3g03950/T11I18_6 (Evolutionarily conserved C-terminal region 1),AT3G03950 protein (Evolutionarily conserved C-terminal region 1),Evolutionarily conserved C-terminal region 1 RNA binding [GO:0003723],nucleus [GO:0005634]; mRNA binding [GO:0003729]; calcium-mediated signaling [GO:0019722] locus:2095938; AT3G03950 YT521-B-like domain NA NA NA NA NA NA NA ENOG411ED7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411ED7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Double-stranded RNA binding motif NA NA NA NA NA NA NA ENOG411ED7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411ED7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411ED7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain NA NA NA NA NA NA NA ENOG411ED7U Q944Q9 Q944Q9_ARATH At4g31450/F3L17_20 (RING/U-box superfamily protein) 55002 At4g31450/F3L17_20 (RING/U-box superfamily protein) locus:2125284; AT4G31450 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411DVIY F4I7L1,F4IEY4,Q1PFK5,F4HV94,A0A1P8APY3,A0A1P8APZ7,F4IEY3,A0A1P8AQ25 TRB4_ARATH,TRB5_ARATH,Q1PFK5_ARATH,F4HV94_ARATH,A0A1P8APY3_ARATH,A0A1P8APZ7_ARATH,F4IEY3_ARATH,A0A1P8AQ25_ARATH Telomere repeat-binding factor 4 (MYB transcription factor),Telomere repeat-binding factor 5 (MYB transcription factor),Winged-helix DNA-binding transcription factor family protein,Homeodomain-like/winged-helix DNA-binding family protein FUNCTION: Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. 32756,31882,25441,22700,32261,32912,31233,32132 Telomere repeat-binding factor 4 (MYB transcription factor),Telomere repeat-binding factor 5 (MYB transcription factor),Winged-helix DNA-binding transcription factor family protein,Homeodomain-like/winged-helix DNA-binding family protein nuclear chromosome, telomeric region [GO:0000784]; nucleosome [GO:0000786]; double-stranded telomeric DNA binding [GO:0003691]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; nucleosome assembly [GO:0006334]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351],nuclear chromosome, telomeric region [GO:0000784]; nucleosome [GO:0000786]; nucleus [GO:0005634]; double-stranded telomeric DNA binding [GO:0003691]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; nucleosome assembly [GO:0006334]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351],nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; nucleosome assembly [GO:0006334] locus:2007878;,locus:2030275;,locus:2020183;,locus:2020193; AT1G17520,AT1G72740,AT1G54240,AT1G54260 single myb histone MYB28 protein (Os01g0708000 protein) Q8GUA0 Q8GUA0_ORYSJ myb28 Os01g0708000 OSNPB_010708000 ENOG411DVIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DVIA ERABP1 P33487 ABP1_ARATH Auxin-binding protein 1 (ABP1) DISRUPTION PHENOTYPE: Embryo lethality, when homozygous (PubMed:11297513). No visible phenotype was found for other null mutants (PubMed:25646447). {ECO:0000269|PubMed:11297513, ECO:0000269|PubMed:25646447}. Embryo defective; Globular-A. Jones-2001 FUNCTION: Auxin receptor that controls cell elongation and cell division (PubMed:9804548, PubMed:11297513). Involved in embryonic morphogenesis (PubMed:11297513). Acts on the cell cycle, endocycle, cell plate formation, and cell expansion and contributes to the control of auxin-related gene expression (PubMed:18952781). Controls root meristem size and mediates auxin responsiveness (PubMed:19777056). Involved in activation of ROP GTPases in response to auxin and regulation of clathrin-mediated endocytosis in roots (PubMed:20887895, PubMed:22683261). Acts as a positive factor in clathrin recruitment to the plasma membrane, thereby promoting endocytosis (PubMed:20887896, PubMed:25922490). Upon auxin binding, restricts the internalization of PIN proteins by inhibiting clathrin-mediated endocytosis (PubMed:20887896, PubMed:25922490). Involved in the regulation of polar auxin transport (PubMed:21223392). Behaves as a negative regulator of the SCF(TIR1/AFB) signaling pathway, protecting AUX/IAA repressors from degradation (PubMed:24051655). Regulates the expression of cell wall remodeling genes via an SCF(TIR1/AFB)-dependent pathway (PubMed:24424095). Involved in the modulation of hemicellulose xyloglucan structure (PubMed:24424095). Required for rapid auxin-mediated re-orientation of microtubules to regulate cell elongation in roots and dark-grown hypocotyls as well as asymmetric growth during gravitropic responses (PubMed:25409144). Involved in the shade avoidance response (PubMed:24052532). Forms with TMK1 a cell surface auxin perception complex that activates ROP signaling pathways (PubMed:24578577). ABP1 sensing of auxin is important for the ABP1-TMK1 complex formation (PubMed:24578577). Interacts functionally with phytochrome to regulate growth (PubMed:25392478). {ECO:0000269|PubMed:11297513, ECO:0000269|PubMed:18952781, ECO:0000269|PubMed:19777056, ECO:0000269|PubMed:20887895, ECO:0000269|PubMed:20887896, ECO:0000269|PubMed:21223392, ECO:0000269|PubMed:22683261, ECO:0000269|PubMed:24051655, ECO:0000269|PubMed:24052532, ECO:0000269|PubMed:24424095, ECO:0000269|PubMed:24578577, ECO:0000269|PubMed:25392478, ECO:0000269|PubMed:25409144, ECO:0000269|PubMed:25922490, ECO:0000269|PubMed:9804548}. 22044 Auxin-binding protein 1 (ABP1) endoplasmic reticulum lumen [GO:0005788]; plasma membrane [GO:0005886]; auxin binding [GO:0010011]; receptor activity [GO:0004872]; zinc ion binding [GO:0008270]; cytokinesis by cell plate formation [GO:0000911]; positive regulation of cell division [GO:0051781]; positive regulation of cell size [GO:0045793]; positive regulation of DNA endoreduplication [GO:0032877]; unidimensional cell growth [GO:0009826] locus:2005491; AT4G02980 auxin-binding protein Os12g0529300 protein,Auxin-binding protein (Auxin-binding protein 4, putative, expressed) (Os12g0529400 protein) (cDNA clone:J013102J06, full insert sequence) A3CHZ5,Q2QPH4 A3CHZ5_ORYSJ,Q2QPH4_ORYSJ Os12g0529300 OsJ_36328 OSNPB_120529300,abp LOC_Os12g34460 Os12g0529400 OsJ_36329 OSNPB_120529400 ENOG411DVIM GA2OX1 Q8LEA2 G2OX1_ARATH Gibberellin 2-beta-dioxygenase 1 (EC 1.14.11.13) (GA 2-oxidase 1) (Gibberellin 2-beta-hydroxylase 1) (Gibberellin 2-oxidase 1) FUNCTION: Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. Converts GA9/GA20 to GA51/GA29 and GA4/GA1 to GA34/GA8. {ECO:0000269|PubMed:10200325, ECO:0000269|PubMed:18805991}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT1G78440-MONOMER;MetaCyc:AT1G78440-MONOMER; 1.14.11.13; 1.14.11.13 36732 Gibberellin 2-beta-dioxygenase 1 (EC 1.14.11.13) (GA 2-oxidase 1) (Gibberellin 2-beta-hydroxylase 1) (Gibberellin 2-oxidase 1) gibberellin 2-beta-dioxygenase activity [GO:0045543]; metal ion binding [GO:0046872]; gibberellin biosynthetic process [GO:0009686]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Preferentially expressed in flowers, siliques, and upper stems. Not expressed in the apex. {ECO:0000269|PubMed:10200325, ECO:0000269|PubMed:16139211}. locus:2032080; AT1G78440 gibberellin Gibberellin 2-beta-dioxygenase 3 (EC 1.14.11.13) (Gibberellin 2-beta-hydroxylase 3) (Gibberellin 2-oxidase 3) (GA 2-oxidase 3) (OsGA2ox3) Q8S0S6 G2OX3_ORYSJ GA2OX3 Os01g0757200 LOC_Os01g55240 OJ1414_E05.17 FUNCTION: Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development (PubMed:12736788, PubMed:18952778). In vitro, converts GA1, GA20, and GA29 to the corresponding 2-beta-hydroxylated products GA8, GA29-catabolite, respectively (PubMed:12736788). {ECO:0000269|PubMed:12736788, ECO:0000269|PubMed:18952778}. MISCELLANEOUS: Plants overexpressing GA2OX3 exhibit extremely dwarf phenotype and are unable to achieve phase transition from vegetative to reproductive growth. {ECO:0000269|PubMed:12736788, ECO:0000269|PubMed:18952778}. ENOG411DZ1C FKBP42 Q9LDC0 FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 (PPIase FKBP42) (EC 5.2.1.8) (42 kDa peptidyl-prolyl isomerase) (FK506-binding protein 42) (AtFKBP42) (Immunophilin FKBP42) (Protein TWISTED DWARF 1) (Protein ULTRACURVATA 2) (Rotamase) DISRUPTION PHENOTYPE: Plants display helical rotation of several organs. {ECO:0000269|PubMed:12410806}. Rolled leaves-J. Micol-2002 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:14517332, ECO:0000269|PubMed:14730066, ECO:0000269|PubMed:15133126, ECO:0000269|PubMed:16887800, ECO:0000269|PubMed:18499676, ECO:0000269|PubMed:20971896}. 5.2.1.8 41806 Peptidyl-prolyl cis-trans isomerase FKBP42 (PPIase FKBP42) (EC 5.2.1.8) (42 kDa peptidyl-prolyl isomerase) (FK506-binding protein 42) (AtFKBP42) (Immunophilin FKBP42) (Protein TWISTED DWARF 1) (Protein ULTRACURVATA 2) (Rotamase) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; calmodulin binding [GO:0005516]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; auxin-activated signaling pathway [GO:0009734]; leaf development [GO:0048366] locus:2089890; AT3G21640 peptidylprolyl Peptidylprolyl isomerase (EC 5.2.1.8) Q2RAK4,Q2QXS0 Q2RAK4_ORYSJ,Q2QXS0_ORYSJ Os11g0148300 LOC_Os11g05090 OsJ_32967 OSNPB_110148300,Os12g0145500 LOC_Os12g05090 Os12g0145500 OsJ_35207 OSNPB_120145500 ENOG411DZ1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF668) Os02g0551700 protein (Fragment) A0A0P0VKF7 A0A0P0VKF7_ORYSJ Os02g0551700 OSNPB_020551700 ENOG411DZ1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain NA NA NA NA NA NA NA ENOG411DZ1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family Os09g0491788 protein (cDNA clone:J033044G18, full insert sequence),Os09g0491852 protein,Os09g0491822 protein,Os09g0491804 protein B7EM60,C7J745,A0A0P0XPA9,A0A0P0XNX2 B7EM60_ORYSJ,C7J745_ORYSJ,A0A0P0XPA9_ORYSJ,A0A0P0XNX2_ORYSJ Os09g0491788 Os09g0491788 OSNPB_090491788,Os09g0491852 OSNPB_090491852,Os09g0491822 OSNPB_090491822,Os09g0491804 OSNPB_090491804 ENOG411DZ1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0820700 protein (WRKY transcription factor 18-like protein) Q5QMC1 Q5QMC1_ORYSJ P0703B11.9 Os01g0820700 OSNPB_010820700 ENOG411DZ1U CDC73 Q9LJ87 CDC73_ARATH Protein CDC73 homolog (Protein PLANT HOMOLOGOUS TO PARAFIBROMIN) DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:20363855, ECO:0000269|PubMed:20463090}. Early flowering in short and long days. Early flowering independent of photoperiod-S. Michaels-2010 FUNCTION: Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3) (PubMed:20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressors FLC and MADS-box genes of the MAF family. Required for histone H3 trimethylation on 'Lys-4' (H3K4me3) at the FLC locus (PubMed:20363855, PubMed:20463090). Prevents trimethylation on 'Lys-27' (H3K27me3) at the same locus (PubMed:20363855). {ECO:0000269|PubMed:20363855, ECO:0000269|PubMed:20463090}. 47544 Protein CDC73 homolog (Protein PLANT HOMOLOGOUS TO PARAFIBROMIN) Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634]; RNA polymerase II core binding [GO:0000993]; transcription factor activity, RNA polymerase II transcription factor binding [GO:0001076]; flower development [GO:0009908]; histone H3-K4 methylation [GO:0051568]; positive regulation of flower development [GO:0009911]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [GO:0034402]; transcription elongation from RNA polymerase II promoter [GO:0006368]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in root tips, shoot apex, young leaves and flowers, especially in stamen filaments and carpels. {ECO:0000269|PubMed:20463090}. locus:2077076; AT3G22590 RNA pol II accessory factor Cdc73 family Expressed protein, having alternative splicing products (Os03g0664700 protein) (Putative RNA pol II accessory factor (With alternative splicing)) (RNA pol II accessory factor, Cdc73 family protein, expressed) (cDNA clone:J023121E24, full insert sequence) Q75GC3 Q75GC3_ORYSJ OSJNBb0031A14.2 LOC_Os03g46190 Os03g0664700 OSJNBa0034D21.3 OSNPB_030664700 ENOG411DZ1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Glycosyl hydrolases family 17 protein, expressed (Os03g0374600 protein) (Putative glucanase) (cDNA clone:J023001F15, full insert sequence),Os03g0374600 protein Q7Y157,A0A0P0VY06 Q7Y157_ORYSJ,A0A0P0VY06_ORYSJ Os03g0374600 LOC_Os03g25790 Os03g0374600 OSJNBa0090L05.11 OSNPB_030374600,Os03g0374600 OSNPB_030374600 ENOG411EFR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFR7 TIM23-3 Q9S837 TI233_ARATH Mitochondrial import inner membrane translocase subunit TIM23-3 FUNCTION: Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes (By similarity). {ECO:0000250}. 20213 Mitochondrial import inner membrane translocase subunit TIM23-3 integral component of mitochondrial inner membrane [GO:0031305]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; protein channel activity [GO:0015266]; protein import into mitochondrial matrix [GO:0030150] TISSUE SPECIFICITY: Expressed in roots. Detected in cotyledons, leaves and flowers. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}. locus:2084913; AT3G04800 Mitochondrial import inner membrane translocase subunit NA NA NA NA NA NA NA ENOG411EFR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NHP2-like protein 1, putative, expressed (Os10g0124000 protein) (Putative ribosomal protein L7Ae-like) (cDNA clone:J033109K13, full insert sequence) Q7G608 Q7G608_ORYSJ Os10g0124000 LOC_Os10g03540 Os10g0124000 OsJ_30578 OSJNAa0049K09.17 OSJNBa0056A20.5 OSNPB_100124000 ENOG411EFR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Coiled-coil domain containing 61 NA NA NA NA NA NA NA ENOG411EFR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EFR0 F4IN64,A0A1P8B1J6 F4IN64_ARATH,A0A1P8B1J6_ARATH Uncharacterized protein 21009,23829 Uncharacterized protein locus:2066395; AT2G48090 NA NA NA NA NA NA NA NA ENOG411EFRZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411EFRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFRX F25L23_40 Q9LX54,Q9LX48,Q3E7J7,Q1PED9,Q9LUK1,Q8GYP8,P0C2G0,Q8GW80,Q9LX47,Q9LX56,Q8GWI2,Q94B46,Q9LQC1,Q9LX55,Q8L7H1,Q9LX53,Q9FJ31,A0A1P8ARR9,A0A1P8BAY2,F4K1G1,F4I566,A0A1P8BG75,A0A1I9LM02,A0A1I9LM03,A0A1I9LM00,A0A1I9LSN3,A0A1I9LM01,F4IDP6,F4JUK8,A0A1I9LTT4 FBL62_ARATH,FBL66_ARATH,FBL83_ARATH,FBL63_ARATH,FB275_ARATH,FB310_ARATH,FBL27_ARATH,FBL65_ARATH,FDL46_ARATH,FB212_ARATH,FBL69_ARATH,FBL74_ARATH,FB65_ARATH,FBL61_ARATH,FBL75_ARATH,Q9LX53_ARATH,Q9FJ31_ARATH,A0A1P8ARR9_ARATH,A0A1P8BAY2_ARATH,F4K1G1_ARATH,F4I566_ARATH,A0A1P8BG75_ARATH,A0A1I9LM02_ARATH,A0A1I9LM03_ARATH,A0A1I9LM00_ARATH,A0A1I9LSN3_ARATH,A0A1I9LM01_ARATH,F4IDP6_ARATH,F4JUK8_ARATH,A0A1I9LTT4_ARATH Putative F-box/LRR-repeat protein At3g59170,Putative F-box/LRR-repeat protein At3g59230,Putative F-box/LRR-repeat protein At5g25860,F-box/LRR-repeat protein At3g59190,Putative F-box protein At5g40050,F-box protein At1g56610,F-box/LRR-repeat protein At1g06630,F-box/LRR-repeat protein At3g59210,Putative F-box/FBD/LRR-repeat protein At3g59240,F-box protein At3g59150,F-box/LRR-repeat protein At3g60040,F-box/LRR-repeat protein At4g14096,Putative F-box protein At1g58310,Putative F-box/LRR-repeat protein At3g59160,F-box/LRR-repeat protein At4g14103,Protein with RNI-like/FBD-like domain (Uncharacterized protein F25L23_40),RNI-like superfamily protein,F-box/RNI-like superfamily protein,Protein with RNI-like/FBD-like domain,F-box family protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 54120,55161,51940,44011,47923,61762,45430,54355,57368,53870,50706,52873,57666,52886,43234,54390,53582,46509,59151,46239,49804,49560,69831,74883,75069,59026,94265,53175,50280,41225 Putative F-box/LRR-repeat protein At3g59170,Putative F-box/LRR-repeat protein At3g59230,Putative F-box/LRR-repeat protein At5g25860,F-box/LRR-repeat protein At3g59190,Putative F-box protein At5g40050,F-box protein At1g56610,F-box/LRR-repeat protein At1g06630,F-box/LRR-repeat protein At3g59210,Putative F-box/FBD/LRR-repeat protein At3g59240,F-box protein At3g59150,F-box/LRR-repeat protein At3g60040,F-box/LRR-repeat protein At4g14096,Putative F-box protein At1g58310,Putative F-box/LRR-repeat protein At3g59160,F-box/LRR-repeat protein At4g14103,Protein with RNI-like/FBD-like domain (Uncharacterized protein F25L23_40),RNI-like superfamily protein,F-box/RNI-like superfamily protein,Protein with RNI-like/FBD-like domain,F-box family protein vacuole [GO:0005773],integral component of membrane [GO:0016021]; protein ubiquitination [GO:0016567],nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523] locus:2081257;,locus:2081202;,locus:2145284;,locus:2081297;,locus:2174895;,locus:2027539;,locus:2081172;,locus:2081242;,locus:505006456;,locus:2016630;,locus:2081247;,locus:2081272;,locus:2152945;,locus:1006230425;,locus:2009125;,locus:505006457; AT3G59170,AT3G59230,AT5G25860,AT3G59190,AT5G40050,AT1G56610,AT1G06630,AT3G59210,AT3G59240,AT3G59150,AT3G60040,AT4G14096,AT1G58310,AT3G59160,AT4G14103,AT3G59180,AT5G41830,AT5G35926 F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411EFRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os05g0123400 protein (Fragment) A0A0P0WHF3 A0A0P0WHF3_ORYSJ Os05g0123400 OSNPB_050123400 ENOG411EFRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin NA NA NA NA NA NA NA ENOG411EFRU GRXS12 Q8LBS4,F4IUG7 GRS12_ARATH,F4IUG7_ARATH Monothiol glutaredoxin-S12, chloroplastic (AtGrxS12),Thioredoxin superfamily protein FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 19125,22274 Monothiol glutaredoxin-S12, chloroplastic (AtGrxS12),Thioredoxin superfamily protein chloroplast [GO:0009507]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; response to cytokinin [GO:0009735] locus:2038932; AT2G20270 Glutaredoxin NA NA NA NA NA NA NA ENOG411EFRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EFRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYD domain NA NA NA NA NA NA NA ENOG411EFRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EFRP F4HWA5 F4HWA5_ARATH E3 ubiquitin ligase 18583 E3 ubiquitin ligase integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842]; organelle organization [GO:0006996] locus:4515102534; AT1G14688 E3 Ubiquitin ligase NA NA NA NA NA NA NA ENOG411EFRN AtENODL22 Q9LMU7 Q9LMU7_ARATH At1g17800 (Early nodulin-like protein 22) (F2H15.3 protein) 15538 At1g17800 (Early nodulin-like protein 22) (F2H15.3 protein) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2030888; AT1G17800 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EFRM T23K23.28 Q93VS6 Q93VS6_ARATH At1g67870/T23K23_28 (Glycine-rich protein) (Uncharacterized protein At1g67870) (Uncharacterized protein T23K23.28) 30940 At1g67870/T23K23_28 (Glycine-rich protein) (Uncharacterized protein At1g67870) (Uncharacterized protein T23K23.28) locus:2200206; AT1G67870 NA NA NA NA NA NA NA NA ENOG411EFRK CYS1 Q945Q1 CYT1_ARATH Cysteine proteinase inhibitor 1 (AtCYS-1) FUNCTION: Involved in suppression of hypersensitive cell death activated by either avirulent pathogen or oxidative stress. {ECO:0000269|PubMed:12787025}. 11256 Cysteine proteinase inhibitor 1 (AtCYS-1) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; protease binding [GO:0002020]; cellular response to cold [GO:0070417]; cellular response to heat [GO:0034605]; cellular response to water deprivation [GO:0042631]; defense response [GO:0006952]; negative regulation of cysteine-type endopeptidase activity [GO:2000117]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in roots and developing siliques. {ECO:0000269|PubMed:12787025}. locus:2177063; AT5G12140 ATCYS1 ATCYS1 (A. thaliana cystatin-1) NA NA NA NA NA NA NA ENOG411EFRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF966) NA NA NA NA NA NA NA ENOG411EFRI EC1.2,EC1.3 Q9SJ24,Q9SJ23 EC12_ARATH,EC13_ARATH Egg cell-secreted protein 1.2,Egg cell-secreted protein 1.3 FUNCTION: Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival. {ECO:0000269|PubMed:23180860}. 13303,13272 Egg cell-secreted protein 1.2,Egg cell-secreted protein 1.3 cytoplasmic vesicle [GO:0031410]; extracellular region [GO:0005576]; vesicle [GO:0031982]; double fertilization forming a zygote and endosperm [GO:0009567]; regulation of double fertilization forming a zygote and endosperm [GO:0080155]; regulation of protein localization to cell surface [GO:2000008]; single fertilization [GO:0007338] DEVELOPMENTAL STAGE: Confined to the egg cell before fertilization, but disappears upon gamete fusion. Also present in zygotes and early embryos. {ECO:0000269|PubMed:23180860}. TISSUE SPECIFICITY: Restricted to female reproductive tissues, specifically accumulating in storage vesicles of the unfertilized egg cell. {ECO:0000269|PubMed:23180860}. locus:2052536;,locus:2052556; AT2G21740,AT2G21750 Pfam:DUF1278 Os12g0167601 protein Q2QX72 Q2QX72_ORYSJ Os12g0167601 LOC_Os12g06970 OsJ_35349 OSNPB_120167601 ENOG411EFRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFRG Q84VW3 Q84VW3_ARATH At3g14700 (SART-1 family) (Uncharacterized protein At3g14700) R-ATH-72163; 23540 At3g14700 (SART-1 family) (Uncharacterized protein At3g14700) U4/U6 x U5 tri-snRNP complex [GO:0046540]; maturation of 5S rRNA [GO:0000481]; mRNA cis splicing, via spliceosome [GO:0045292]; spliceosomal snRNP assembly [GO:0000387] locus:2089551; AT3G14700 SART-1 family NA NA NA NA NA NA NA ENOG411EFRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Iron/manganese superoxide dismutases alpha-hairpin domain NA NA NA NA NA NA NA ENOG411EFRE DRMH2 Q9FKV8 DRMH2_ARATH Dormancy-associated protein homolog 2 (DRM1 homolog 2) (Dormancy/auxin associated family protein) 12314 Dormancy-associated protein homolog 2 (DRM1 homolog 2) (Dormancy/auxin associated family protein) locus:2158725; AT5G44300 Dormancy auxin associated NA NA NA NA NA NA NA ENOG411EFRD Q8RXZ6 Q8RXZ6_ARATH Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At4g17215) 16597 Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At4g17215) locus:505006487; AT4G17215 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411EFRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411EFRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411DZ11 Q84LS2,Q9SKL6,Q9ZUJ8,Q6DR93 Q84LS2_ARATH,Q9SKL6_ARATH,Q9ZUJ8_ARATH,Q6DR93_ARATH Plant basic secretory protein (BSP) family protein,At2g15220/F15A23.4 (Expressed protein) (Plant basic secretory protein (BSP) family protein) (Uncharacterized protein F15A23.4/At2g15220),Plant basic secretory protein (BSP) family protein (Uncharacterized protein At2g15130) 16352,25164,25361,11508 Plant basic secretory protein (BSP) family protein,At2g15220/F15A23.4 (Expressed protein) (Plant basic secretory protein (BSP) family protein) (Uncharacterized protein F15A23.4/At2g15220),Plant basic secretory protein (BSP) family protein (Uncharacterized protein At2g15130) locus:2041839;,locus:2041824;,locus:2041819; AT2G15130,AT2G15220,AT2G15170 secretory protein Os10g0490900 protein (Fragment) A0A0P0XVM4 A0A0P0XVM4_ORYSJ Os10g0490900 OSNPB_100490900 ENOG411DZ10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2),Os01g0216700 protein Q9LG86,A2ZQP0 IAA2_ORYSJ,A2ZQP0_ORYSJ IAA2 Os01g0190300 LOC_Os01g09450 OsJ_00698 P0710E05.18,Os01g0216700 OsJ_00881 OSNPB_010216700 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411EKAK Q3E7K7,A8MS33 FB243_ARATH,A8MS33_ARATH F-box protein At4g22280,F-box/RNI-like superfamily protein 37833,47410 F-box protein At4g22280,F-box/RNI-like superfamily protein locus:2132060; AT4G22280 F-box domain NA NA NA NA NA NA NA ENOG411EKAJ Q9SLM4 Q9SLM4_ARATH Protein kinase superfamily protein (Uncharacterized protein At2g40980) 69106 Protein kinase superfamily protein (Uncharacterized protein At2g40980) plasma membrane [GO:0005886]; kinase activity [GO:0016301] locus:2063187; AT2G40980 Inherit from KOG: ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EKAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0577400 protein) (Putative hypersensitive reaction and pathogenicity protein) (Putative proline and glutamic acid rich nuclear protein) (cDNA clone:J033118P16, full insert sequence) Q7XBU9 Q7XBU9_ORYSJ OSJNBa0035H01.6 LOC_Os10g42660 Os10g0577400 OsJ_32582 OSJNBa0027L23.10 OSNPB_100577400 ENOG411EKAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: single-stranded dna binding protein NA NA NA NA NA NA NA ENOG411EKAM A0A1P8ARB3 A0A1P8ARB3_ARATH F-box family protein 9656 F-box family protein FBOX NA NA NA NA NA NA NA ENOG411EKAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0529400 protein A0A0N7KQ68 A0A0N7KQ68_ORYSJ Os08g0529400 OSNPB_080529400 ENOG411EKAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKAF MNF13.26 Q9FM28,Q9LTZ4,F4IWH3,F4IWH1 Q9FM28_ARATH,Q9LTZ4_ARATH,F4IWH3_ARATH,F4IWH1_ARATH Dbj|BAA95710.1 (Transcriptional regulator ATRX-like protein),Transcriptional regulator ATRX-like protein (Uncharacterized protein At3g27350),Transcriptional regulator ATRX-like protein 33932,31688,32344,36706 Dbj|BAA95710.1 (Transcriptional regulator ATRX-like protein),Transcriptional regulator ATRX-like protein (Uncharacterized protein At3g27350),Transcriptional regulator ATRX-like protein plasma membrane [GO:0005886] locus:2086686; AT5G40700,AT3G27350 NA NA NA NA NA NA NA NA ENOG411EKAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411EKAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein, expressed (Os10g0126800 protein) Q8S813 Q8S813_ORYSJ OSJNBa0020E23.11 LOC_Os10g03760 Os10g0126800 OSNPB_100126800 ENOG411EKAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: zinc ion binding NA NA NA NA NA NA NA ENOG411EKAX EMB3135 Q9LYI4 Q9LYI4_ARATH Harpin-induced protein (Uncharacterized protein F14F18_60) Embryo defective; Cotyledon-D. Meinke-2011 31438 Harpin-induced protein (Uncharacterized protein F14F18_60) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2143064; AT5G11890 Inherit from NOG: harpin-induced protein 1 domain containing protein expressed NA NA NA NA NA NA NA ENOG411EKAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tic20-like protein NA NA NA NA NA NA NA ENOG411EKAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: desiccation-related protein Desiccation-related protein PCC13-62, putative, expressed (Os03g0345300 protein),Os03g0345300 protein Q10LK1,A0A0P0VY35 Q10LK1_ORYSJ,A0A0P0VY35_ORYSJ Os03g0345300 LOC_Os03g22470 Os03g0345300 OSNPB_030345300,Os03g0345300 OSNPB_030345300 ENOG411EKAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HtrA serine peptidase NA NA NA NA NA NA NA ENOG411EKAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protease inhibitor seed storage NA NA NA NA NA NA NA ENOG411EKAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA wiskott-Aldrich syndrome protein family member 2 NA NA NA NA NA NA NA ENOG411EKAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZ12 Q6NQ64,A0A1P8B962,A0A1P8B968 TRM52_ARATH,A0A1P8B962_ARATH,A0A1P8B968_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 (EC 2.1.1.228) (M1G-methyltransferase 2) (tRNA [GM37] methyltransferase 2) (tRNA methyltransferase 5 homolog 2),Met-10+ like family protein,tRNA (guanine(37)-N1)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase) (tRNA methyltransferase 5 homolog) FUNCTION: Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. {ECO:0000255|HAMAP-Rule:MF_03152}.,FUNCTION: Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. {ECO:0000256|HAMAP-Rule:MF_03152}. 2.1.1.228 70569,49655,65096 tRNA (guanine(37)-N1)-methyltransferase 2 (EC 2.1.1.228) (M1G-methyltransferase 2) (tRNA [GM37] methyltransferase 2) (tRNA methyltransferase 5 homolog 2),Met-10+ like family protein,tRNA (guanine(37)-N1)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase) (tRNA methyltransferase 5 homolog) mitochondrial matrix [GO:0005759]; nucleus [GO:0005634]; tRNA (guanine(37)-N(1))-methyltransferase activity [GO:0052906],transferase activity [GO:0016740]; tRNA processing [GO:0008033] locus:2131744; AT4G27340 Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW) a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (By similarity) Os01g0390400 protein,tRNA (guanine(37)-N1)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase) (tRNA methyltransferase 5 homolog) Q5VNI9,Q5VNJ0 Q5VNI9_ORYSJ,Q5VNJ0_ORYSJ OJ1123_G09.29-2 Os01g0390400 OSNPB_010390400,OJ1123_G09.29-1 Os01g0390400 OSNPB_010390400 FUNCTION: Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. {ECO:0000256|HAMAP-Rule:MF_03152}. ENOG411DZ14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDP-fucose protein O-fucosyltransferase Os09g0548100 protein (Fragment) C7J762 C7J762_ORYSJ Os09g0548100 OSNPB_090548100 ENOG411EKA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBM_2 Os01g0856900 protein (cDNA clone:002-130-D02, full insert sequence) Q94DE9 Q94DE9_ORYSJ Os01g0856900 OJ1402_H07.28 OSNPB_010856900 P0683F02.5 ENOG411EKA8 Q84WN0 Y4920_ARATH Uncharacterized protein At4g37920, chloroplastic 48732 Uncharacterized protein At4g37920, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535] locus:2121036; AT4G37920 NA Endoribonuclease E-like protein (Os01g0306800 protein),Os08g0320800 protein Q656E1,Q656E2,A0A0N7KPN0 Q656E1_ORYSJ,Q656E2_ORYSJ,A0A0N7KPN0_ORYSJ Os01g0306800 P0552C05.41-2 OSJNBb0022N24.14-2 OSNPB_010306800,Os01g0306800 P0552C05.41-1 Os01g0306800 OSJNBb0022N24.14-1 OSNPB_010306800,Os08g0320800 OSNPB_080320800 ENOG411EKA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF NA NA NA NA NA NA NA ENOG411EKA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0600650 protein,Os06g0550800 protein C7IYW3,Q5Z943 C7IYW3_ORYSJ,Q5Z943_ORYSJ Os02g0600650 Os02g0600650 OSNPB_020600650,Os06g0550800 Os06g0550800 OsJ_21644 OSNPB_060550800 P0659D09.34 ENOG411EKA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cauliflower mosaic virus peptidase (A3) NA NA NA NA NA NA NA ENOG411EKA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein, expressed (Os10g0126000 protein) Q33BA5 Q33BA5_ORYSJ Os10g0126000 LOC_Os10g03690 OSNPB_100126000 ENOG411EKA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EPF-type Cis2-His2 zinc finger transcription factor NA NA NA NA NA NA NA ENOG411EKA4 O80500 O80500_ARATH At2g44600/F16B22.9 (Uncharacterized protein At2g44600) 34431 At2g44600/F16B22.9 (Uncharacterized protein At2g44600) plasma membrane [GO:0005886] locus:2042391; AT2G44600 Inherit from NOG: transposon protein NA NA NA NA NA NA NA ENOG411DZ17 PAP11 O81304 PAP11_ARATH Probable plastid-lipid-associated protein 11 (Fibrillin-9) 24069 Probable plastid-lipid-associated protein 11 (Fibrillin-9) cytoplasm [GO:0005737] locus:2126851; AT4G00030 plastid-lipid-associated protein 11 Os04g0551700 protein (Fragment) Q0JB74 Q0JB74_ORYSJ Os04g0551700 Os04g0551700 OSNPB_040551700 ENOG411EKEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EKEN DDB2 Q6NQ88,A0A1P8BFU8 DDB2_ARATH,A0A1P8BFU8_ARATH Protein DAMAGED DNA-BINDING 2 (UV-damaged DNA-binding protein 2),Damaged DNA binding 2 FUNCTION: May function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex including DDB1A and CUL4 (By similarity). Required for DNA repair. Binds to DDB1A to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair (PubMed:18551167). Involved in UV-B tolerance and genome integrity. In association with ATCSA-1, is necessary for repair of UV-B-induced DNA lesions (PubMed:20128879). {ECO:0000250, ECO:0000269|PubMed:18551167, ECO:0000269|PubMed:20128879}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5696394;R-ATH-5696395;R-ATH-5696400;R-ATH-8951664; 62829,51871 Protein DAMAGED DNA-BINDING 2 (UV-damaged DNA-binding protein 2),Damaged DNA binding 2 Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; zinc ion binding [GO:0008270]; DNA repair [GO:0006281]; protein ubiquitination [GO:0016567]; response to UV-B [GO:0010224],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; DNA repair [GO:0006281] locus:2178808; AT5G58760 damaged DNA-binding DNA damage-binding protein 2 (UV-damaged DNA-binding protein 2) (OsUV-DDB2) (WD40 repeat-containing protein 2) (OsWD40-2) Q84KJ3 DDB2_ORYSJ DDB2 Os01g0141700 LOC_Os01g04870 OsJ_00319 P0019D06.8 FUNCTION: Required for DNA repair. Binds to DDB1 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair (Probable). May function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex (By similarity). {ECO:0000250|UniProtKB:Q92466, ECO:0000305|PubMed:12711392}. ENOG411EKEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: alpha/beta hydrolase fold Esterase PIR7B (EC 3.1.-.-),Os01g0934600 protein,Os01g0934800 protein (Fragment) Q0JG99,A3A197,A0A0P0VCE2 PIR7B_ORYSJ,A3A197_ORYSJ,A0A0P0VCE2_ORYSJ PIR7B Os01g0934800 LOC_Os01g70850 P0423A12.26 P0492G09.7,Os01g0934600 OsJ_04670 OSNPB_010934600,Os01g0934800 OSNPB_010934800 FUNCTION: Exhibits esterase activity towards naphthol AS-acetate in vitro. {ECO:0000269|PubMed:9652390}. ENOG411EKEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EABW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411EKE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ Os05g0579900 protein (Fragment),Os01g0634300 protein Q0DFN6,A0A0N7KDD6,A0A0P0WRB4 Q0DFN6_ORYSJ,A0A0N7KDD6_ORYSJ,A0A0P0WRB4_ORYSJ Os05g0579900 Os05g0579900 OSNPB_050579900,Os01g0634300 OSNPB_010634300,Os05g0579900 OSNPB_050579900 ENOG411EKE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Heat shock protein binding NA NA NA NA NA NA NA ENOG411EB9F Q84W85 Q84W85_ARATH Rhamnogalacturonate lyase family protein (Uncharacterized protein At4g37950) (Uncharacterized protein At4g37960) 77332 Rhamnogalacturonate lyase family protein (Uncharacterized protein At4g37950) (Uncharacterized protein At4g37960) carbohydrate binding [GO:0030246]; lyase activity [GO:0016829]; carbohydrate metabolic process [GO:0005975] locus:2121090; AT4G37950 Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411EB9G O65378 ACCO3_ARATH 1-aminocyclopropane-1-carboxylate oxidase 3 (ACC oxidase 3) (AtACO3) (EC 1.14.17.4) DISRUPTION PHENOTYPE: Reduced ethylene levels. {ECO:0000269|PubMed:19513806}. The aco mutant appears to have only ~85% of the ethylene of wild type plants. FUNCTION: Enzyme involved in the ethylene biosynthesis. May promote stem elongation by maximizing the extensibility cells, possibly by activating ethylene biosynthesis, in response to very-long-chain fatty acids (VLCFAs C20:0 to C30:0). {ECO:0000269|PubMed:17993622, ECO:0000269|PubMed:19513806}. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 2/2. 1.14.17.4 36532 1-aminocyclopropane-1-carboxylate oxidase 3 (ACC oxidase 3) (AtACO3) (EC 1.14.17.4) 1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; L-ascorbic acid binding [GO:0031418]; metal ion binding [GO:0046872]; cellular response to fatty acid [GO:0071398]; defense response [GO:0006952]; ethylene biosynthetic process [GO:0009693] locus:2008905; AT1G12010 1-aminocyclopropane-1-carboxylate oxidase NA NA NA NA NA NA NA ENOG411EB9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q5VMS0 Q5VMS0_ORYSJ OSJNBa0021H05.23 Os06g0283100 OSNPB_060283100 ENOG411EB9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB9Y Q949Y1 Q949Y1_ARATH Uncharacterized protein At1g63240 60919 Uncharacterized protein At1g63240 locus:2038441; AT1G63240 NA NA NA NA NA NA NA NA ENOG411EB9V SMXL8 F4IGZ2 SMXL8_ARATH Protein SMAX1-LIKE 8 (AtSMXL8) (Protein D53-like 3) (AtD53-like 3) (Protein D53-like SMXL 8) DISRUPTION PHENOTYPE: No visible phenotype. Suppresses max2 phenotypes associated with strigolactone-D14-regulated growth. Smxl8 and max2 double mutants have branching and inflorescence heights similar to max2 mutants. {ECO:0000269|PubMed:26546447}. FUNCTION: Probable component of a transcriptional corepressor complex involved in branching control. Regulates cotyledon expansion and lateral root growth, but not germination or hypocotyl elongation. Promotes auxin transport and PIN1 accumulation in the stem and represses BRC1/TCP18 expression in axillary buds (PubMed:26546447, PubMed:26546446). {ECO:0000269|PubMed:26546446, ECO:0000269|PubMed:26546447}. 101611 Protein SMAX1-LIKE 8 (AtSMXL8) (Protein D53-like 3) (AtD53-like 3) (Protein D53-like SMXL 8) nucleus [GO:0005634]; ATP binding [GO:0005524]; protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; response to strigolactone [GO:1902347]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Detected inaxillary branches and leaves (PubMed:23893171). Expressed in the primary rosette buds and expanding leaves of adult rosettes, the vasculature of the hypocotyls, cotyledons, and mature roots, and in the midvein and petioles of young leaves (PubMed:26546447). {ECO:0000269|PubMed:23893171, ECO:0000269|PubMed:26546447}. locus:2065074; AT2G40130 AAA domain (Cdc48 subfamily) NA NA NA NA NA NA NA ENOG411EB9T Q84K76,A0A1P8AWI2,F4I5T4 Q84K76_ARATH,A0A1P8AWI2_ARATH,F4I5T4_ARATH Uncharacterized protein At1g04830 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein 51095,46136,52254 Uncharacterized protein At1g04830 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2010662; AT1G04830 RabGAP TBC domain-containing protein NA NA NA NA NA NA NA ENOG411EB9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0187000 protein,Os04g0640300 protein,Os05g0109100 protein (Fragment) Q9LDH6,Q0J9N8,A0A0P0WHC3 Q9LDH6_ORYSJ,Q0J9N8_ORYSJ,A0A0P0WHC3_ORYSJ Os01g0187000 OSNPB_010187000 P0512G09.3 P0695A04.12,Os04g0640300 Os04g0640300 OSNPB_040640300,Os05g0109100 OSNPB_050109100 ENOG411EB9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3422) NA NA NA NA NA NA NA ENOG411EB9P ACR7 Q8LJW1 ACR7_ARATH ACT domain-containing protein ACR7 (Protein ACT DOMAIN REPEATS 7) FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 50690 ACT domain-containing protein ACR7 (Protein ACT DOMAIN REPEATS 7) cytosol [GO:0005829]; amino acid binding [GO:0016597] TISSUE SPECIFICITY: Expressed in roots, leaves and stems. {ECO:0000269|PubMed:12481063}. locus:2132609; AT4G22780 ACT domain NA NA NA NA NA NA NA ENOG411EB96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB94 PAP13 O48840 PPA13_ARATH Purple acid phosphatase 13 (EC 3.1.3.2) ARA:AT2G32770-MONOMER; 3.1.3.2; 3.1.3.2 61543 Purple acid phosphatase 13 (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2046407; AT2G32770 Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411EB95 F4HYS9 F4HYS9_ARATH Immunoglobulin E-set superfamily protein R-ATH-194840; 25388 Immunoglobulin E-set superfamily protein cytoplasm [GO:0005737]; Rho GDP-dissociation inhibitor activity [GO:0005094] locus:2027154; AT1G62450 Rho GDP-dissociation inhibitor family protein NA NA NA NA NA NA NA ENOG411EB92 F13I12.180,F13I12.190 Q9SD58,Q9SD60,Q9SD59 FB196_ARATH,Q9SD60_ARATH,Q9SD59_ARATH Putative F-box protein At3g47150,F-box associated ubiquitination effector family protein (Uncharacterized protein F13I12.180),F-box associated ubiquitination effector family protein (Uncharacterized protein F13I12.190) 41557,41154,25790 Putative F-box protein At3g47150,F-box associated ubiquitination effector family protein (Uncharacterized protein F13I12.180),F-box associated ubiquitination effector family protein (Uncharacterized protein F13I12.190) locus:2075591;,locus:2075691;,locus:2075701; AT3G47150,AT3G47130,AT3G47140 F-box associated domain NA NA NA NA NA NA NA ENOG411EIXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWWP domain NA NA NA NA NA NA NA ENOG411EKNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Myb-like protein (Os08g0159000 protein) (cDNA clone:001-016-D01, full insert sequence) (cDNA clone:J033051J11, full insert sequence) Q84PV0 Q84PV0_ORYSJ P0498E12.114 Os08g0159000 OsJ_26118 OSNPB_080159000 ENOG411ECHV MBD2.20 Q9FML9 Q9FML9_ARATH Uncharacterized protein 31441 Uncharacterized protein locus:2159991; AT5G43000 NA NA NA NA NA NA NA NA ENOG411EIX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EESA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECHX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGIQ SOB5 Q9LEZ1 Q9LEZ1_ARATH At5g08150 (Suppressor of phytochrome b 5) (Uncharacterized protein T22D6_90) 16200 At5g08150 (Suppressor of phytochrome b 5) (Uncharacterized protein T22D6_90) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; cytokinin metabolic process [GO:0009690] locus:2181564; AT5G08150 NA NA NA NA NA NA NA NA ENOG411EAB7 SD129,SD1-29 O64782,A0A1P8AQN4 SD129_ARATH,A0A1P8AQN4_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29 (EC 2.7.11.1) (S-domain-1 (SD1) receptor kinase 29) (SD1-29),S-domain-1 29 2.7.11.1 89897,73895 G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29 (EC 2.7.11.1) (S-domain-1 (SD1) receptor kinase 29) (SD1-29),S-domain-1 29 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin protein ligase binding [GO:0031625]; detection of lipopolysaccharide [GO:0032497]; innate immune response [GO:0045087]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; protein autophosphorylation [GO:0046777]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] locus:2197729; AT1G61380 Domain of unknown function (DUF3403) NA NA NA NA NA NA NA ENOG411E4G8 PCAP1 Q96262,F4JUT9,F4JUT8 PCAP1_ARATH,F4JUT9_ARATH,F4JUT8_ARATH Plasma membrane-associated cation-binding protein 1 (AtPCAP1) (Microtubule-destabilizing protein 25),Plasma-membrane associated cation-binding protein 1 DISRUPTION PHENOTYPE: Long etiolated hypocotyls. Reduced accumulation and cell-to-cell movement of Turnip mosaic virus (TuMV) leading to an enhanced plant resistance. {ECO:0000269|PubMed:22209764, ECO:0000269|PubMed:22511869}. FUNCTION: May be involved in intracellular signaling through interaction with PtdInsPs and calmodulin (CaM); may keep PtdInsPs attached to the plasma membrane until Ca(2+)-CaM reaches a competitive concentration subsequent to an increase triggered by a stimulus, thus leading to PtdInsPs release and subsequent activation of InsPs-dependent signaling cascade. Interacts competitively at the N-terminus with calcium ions and CaM (in a calcium-dependent manner), and with the phosphatidylinositol phosphates PtdIns(3,4,5)P(3), PtdIns(3,4)P(2), PtdIns(4,5)P(2) and PtdIns(3,5)P(2). Binds also weakly to PtdIns(3)P, PtdIns(4)P and PtdIns(5)P. Negative regulator of hypocotyl cell elongation by destabilizing cortical microtubules in a calcium-dependent manner. Binds directly to and destabilized microtubules to enhance microtubule depolymerization when cytoplasmic calcium increases. In case of Turnip mosaic virus (TuMV) infection, confers sensitivity by promoting viral cell-to-cell movement through interaction with viral P3N-PIPO. {ECO:0000269|PubMed:17264065, ECO:0000269|PubMed:18397324, ECO:0000269|PubMed:20448467, ECO:0000269|PubMed:22209764, ECO:0000269|PubMed:22511869}. 24584,18989,18064 Plasma membrane-associated cation-binding protein 1 (AtPCAP1) (Microtubule-destabilizing protein 25),Plasma-membrane associated cation-binding protein 1 anchored component of plasma membrane [GO:0046658]; chloroplast [GO:0009507]; cytoplasmic microtubule [GO:0005881]; host cell [GO:0043657]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; copper ion binding [GO:0005507]; microtubule binding [GO:0008017]; phosphatidylinositol-3,4,5-trisphosphate binding [GO:0005547]; phosphatidylinositol-3,4-bisphosphate binding [GO:0043325]; phosphatidylinositol-3,5-bisphosphate binding [GO:0080025]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; cellular response to copper ion [GO:0071280]; cellular response to iron ion [GO:0071281]; cellular response to magnesium ion [GO:0071286]; cellular response to magnesium starvation [GO:0010350]; cellular response to mannitol stimulus [GO:0071325]; cellular response to molecule of bacterial origin [GO:0071219]; cellular response to potassium ion [GO:0035865]; cellular response to salt stress [GO:0071472]; cellular response to sorbitol [GO:0072709]; cortical microtubule organization [GO:0043622]; defense response to bacterium [GO:0042742]; intracellular transport of virus [GO:0075733]; N-terminal protein myristoylation [GO:0006499]; negative regulation of microtubule polymerization [GO:0031115]; negative regulation of unidimensional cell growth [GO:0051511]; positive regulation of microtubule depolymerization [GO:0031117]; response to calcium ion [GO:0051592]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to water deprivation [GO:0009414]; stomatal closure [GO:0090332],anchored component of plasma membrane [GO:0046658]; cellular response to stimulus [GO:0051716] TISSUE SPECIFICITY: Mostly expressed in the basal region of hypocotyls. Expressed in seedlings, roots, shoots, stems, leaves (e.g. in epidermis and vascular tissues), flowers (e.g. in pistils and anthers) and siliques (at protein level). {ECO:0000269|PubMed:17264065, ECO:0000269|PubMed:18397324, ECO:0000269|PubMed:22209764}. locus:2120402; AT4G20260 salt stress root protein Os02g0285300 protein (Putative DREPP2 protein) (cDNA clone:001-018-A12, full insert sequence) Q6K4S7 Q6K4S7_ORYSJ Os02g0285300 Os02g0285300 OJ1115_D03.17 OsJ_06272 OSJNBa0018M09.30 OSNPB_020285300 ENOG411E4G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone HAP3 subunit of HAP complex (HAP3 transcriptional-activator) (Os06g0285200 protein) (cDNA clone:002-141-E08, full insert sequence) Q5VNF4 Q5VNF4_ORYSJ OsHAP3D Os06g0285200 OSNPB_060285200 P0491D10.32 ENOG411E4G2 PETJ Q93VA3 CYC6_ARATH Cytochrome c6, chloroplastic (Cytochrome c-552) (Atc6) (Cytochrome c-553) (Cytochrome c553) (Soluble cytochrome f) FUNCTION: Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. {ECO:0000269|PubMed:16815443}. MISCELLANEOUS: Cyt c6 and plastocyanin are functionally equivalent. 19210 Cytochrome c6, chloroplastic (Cytochrome c-552) (Atc6) (Cytochrome c-553) (Cytochrome c553) (Soluble cytochrome f) chloroplast thylakoid lumen [GO:0009543]; electron carrier activity [GO:0009055]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114]; photosynthesis [GO:0015979] locus:2155332; AT5G45040 Cytochrome c6 Os07g0567400 protein (cDNA clone:J013140D13, full insert sequence) B7EEM6 B7EEM6_ORYSJ Os07g0567400 OSNPB_070567400 ENOG411E4G3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0779800 protein (cDNA clone:002-184-D08, full insert sequence) Q5ZCG2 Q5ZCG2_ORYSJ Os01g0779800 OSNPB_010779800 P0010B10.18 ENOG411E4G0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: senescence-associated protein NA NA NA NA NA NA NA ENOG411E4G1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger NA NA NA NA NA NA NA ENOG411E4G6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os07g0631200 protein (Zinc finger protein-like) (cDNA clone:J013046F21, full insert sequence),Os03g0377600 protein (Putative zinc finger protein),Os03g0380900 protein (Zinc finger, C3HC4 type family protein),Os03g0380700 protein (Putative zinc finger protein) (Zinc finger, C3HC4 type family protein, expressed),Os03g0380100 protein Q8LHN9,Q0DRJ6,Q75M63,Q75M58,A0A0P0VY10 Q8LHN9_ORYSJ,Q0DRJ6_ORYSJ,Q75M63_ORYSJ,Q75M58_ORYSJ,A0A0P0VY10_ORYSJ P0519E12.104 Os07g0631200 OsJ_25234 OSNPB_070631200,Os03g0377600 Os03g0377600 OsJ_11040 OSJNBb0048D20.17 OSNPB_030377600,Os03g0380900 LOC_Os03g26420 OsJ_11062 OSJNBa0011H24.22 OSNPB_030380900,Os03g0380700 LOC_Os03g26370 OsJ_11061 OSJNBa0011H24.27 OSJNBa0013O08.8 OSNPB_030380700,Os03g0380100 OSNPB_030380100 ENOG411E4G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0126600 protein Q6K370 Q6K370_ORYSJ Os09g0126600 Os09g0126600 OJ1352_A10.12 OsJ_28430 OSJNBa0025H18.42 OSNPB_090126600 ENOG411E4G4 Q94AX0 Q94AX0_ARATH AT4g17010/dl4535w (Transcription factor IIIB) 18683 AT4g17010/dl4535w (Transcription factor IIIB) locus:2130434; AT4G17010 NA OSJNBa0084A10.10 protein (Os04g0431800 protein) (cDNA clone:J013132B21, full insert sequence),Os02g0494600 protein (Fragment) Q7XQP5,A0A0N7KFB6 Q7XQP5_ORYSJ,A0A0N7KFB6_ORYSJ OSJNBa0084A10.10 Os04g0431800 OsJ_14854 OSNPB_040431800,Os02g0494600 OSNPB_020494600 ENOG411E4G5 BHLH162 F4JIJ7 BH162_ARATH Transcription factor bHLH162 (Basic helix-loop-helix protein 162) (AtbHLH162) (bHLH 162) (bHLH transcription factor bHLH162) 21577 Transcription factor bHLH162 (Basic helix-loop-helix protein 162) (AtbHLH162) (bHLH 162) (bHLH transcription factor bHLH162) RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to fungus [GO:0050832]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2133089; AT4G20970 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E4GJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os07g0101800 protein A0A0P0X1H0 A0A0P0X1H0_ORYSJ Os07g0101800 OSNPB_070101800 ENOG411E4GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os06g0286228 protein (Phytocyanin protein-like) (cDNA clone:J023007I01, full insert sequence) Q5VMU1 Q5VMU1_ORYSJ Os06g0286228 OsJ_21004 OSNPB_060286228 P0502B12.38 ENOG411E4GH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os01g0822800 protein (Putative RING-H2 zinc finger protein) Q8S0Z1 Q8S0Z1_ORYSJ Os01g0822800 Os01g0822800 OSNPB_010822800 P0485B12.31 ENOG411E4GI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity) NA NA NA NA NA NA NA ENOG411E4GM Q9LMJ2 Q9LMJ2_ARATH 6,7-dimethyl-8-ribityllumazine synthase (At1g06980) (F10K1.30 protein) (Uncharacterized protein At1g06980/F10K1_22) 18943 6,7-dimethyl-8-ribityllumazine synthase (At1g06980) (F10K1.30 protein) (Uncharacterized protein At1g06980/F10K1_22) locus:2007377; AT1G06980 Inherit from euNOG: expressed protein Os03g0298100 protein Q10MR7 Q10MR7_ORYSJ Os03g0298100 LOC_Os03g18660 Os03g0298100 OSNPB_030298100 ENOG411E4GG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone Nuclear transcription factor Y subunit B-4 (OsNF-YB-4) (Transcriptional activator HAP3C) Q65XK1 NFYB4_ORYSJ NFYB4 HAP3C Os05g0573500 LOC_Os05g49780 OJ1735_C10.17 FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}. ENOG411E4GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os01g0183633 protein,Os05g0181250 protein (Fragment) A0A0P0UZ46,A0A0P0WIN2 A0A0P0UZ46_ORYSJ,A0A0P0WIN2_ORYSJ Os01g0183633 OSNPB_010183633,Os05g0181250 OSNPB_050181250 ENOG411E4GX CML27 Q9LE22 CML27_ARATH Probable calcium-binding protein CML27 (Calmodulin-like protein 27) FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 18350 Probable calcium-binding protein CML27 (Calmodulin-like protein 27) plasma membrane [GO:0005886]; vacuole [GO:0005773]; calcium ion binding [GO:0005509] locus:2194105; AT1G18210 Calcium-binding allergen Ole e NA NA NA NA NA NA NA ENOG411E4GY Q94JV9 Q94JV9_ARATH AT4g15140/dl3615c 19028 AT4g15140/dl3615c locus:2129715; AT4G15140 NA OSJNBb0116K07.5 protein (Os04g0504200 protein) (cDNA clone:002-172-D09, full insert sequence) Q7F8Y7 Q7F8Y7_ORYSJ Os04g0504200 OSJNBb0116K07.5 OSNPB_040504200 ENOG411E4GR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cell number regulator 1-like Os02g0763000 protein (Putative PGPS/D12) Q6Z6F9 Q6Z6F9_ORYSJ Os02g0763000 OsJ_08486 OSNPB_020763000 P0486G03.29 P0539D10.5 ENOG411E4GS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CASP-like protein CASP-like protein 5B2 (OsCASPL5B2),CASP-like protein Q0DHM7,Q60EL5 CSPLS_ORYSJ,Q60EL5_ORYSJ Os05g0456500 LOC_Os05g38250 OsJ_18787,OJ1651_D06.18 Os05g0456500 OSNPB_050456500 ENOG411E4GP NFYB7 Q9SIT9 NFYB7_ARATH Nuclear transcription factor Y subunit B-7 (AtNF-YB-7) FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. 24619 Nuclear transcription factor Y subunit B-7 (AtNF-YB-7) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}. locus:2054095; AT2G13570 factor y subunit NA NA NA NA NA NA NA ENOG411E4GQ O64866 O64866_ARATH Calcium-binding EF-hand family protein (Expressed protein) (Uncharacterized protein At2g44310) 15821 Calcium-binding EF-hand family protein (Expressed protein) (Uncharacterized protein At2g44310) cytosol [GO:0005829]; calcium ion binding [GO:0005509]; calcium:sodium antiporter activity [GO:0005432]; calcium ion homeostasis [GO:0055074] locus:2050507; AT2G44310 EF hand family protein EF hand family protein, expressed (Expressed protein) (Os03g0411300 protein) (cDNA, clone: J075091K10, full insert sequence) Q852G4 Q852G4_ORYSJ Os03g0411300 LOC_Os03g29770 Os03g0411300 Os03g29770 OSNPB_030411300 ENOG411E4GV Q9LIE8 Q9LIE8_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 147155 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein locus:4010713767; AT3G22142 AAI Os06g0643500 protein (Putative cell wall protein) (cDNA clone:J033137N14, full insert sequence) Q67WV0 Q67WV0_ORYSJ Os06g0643500 OsJ_22130 OSNPB_060643500 P0416A11.33 ENOG411E4GT Q93WH0,Q9SUF2 Q93WH0_ARATH,Q9SUF2_ARATH Glutaredoxin-like protein 13843,14776 Glutaredoxin-like protein oxidation-reduction process [GO:0055114] locus:2132517; AT4G08280 Glutaredoxin-like domain (DUF836) Glutaredoxin-like protein Q6ZGK5 Q6ZGK5_ORYSJ Os02g0767900 Os02g0767900 OJ1767_D02.6 OSNPB_020767900 ENOG411E4GU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA finger protein Os06g0666500 protein (RING zinc finger protein-like) Q655W3 Q655W3_ORYSJ Os06g0666500 Os06g0666500 OSNPB_060666500 P0637D03.24 ENOG411EI39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase RING1-like NA NA NA NA NA NA NA ENOG411DZS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein Os09g0372900 protein (cDNA clone:006-204-D07, full insert sequence),Os09g0372900 protein (cDNA clone:J013112A11, full insert sequence) Q6H4I4,Q6H4I3 Q6H4I4_ORYSJ,Q6H4I3_ORYSJ P0599F09.14-1 Os09g0372900 OSNPB_090372900,P0599F09.14-2 Os09g0372900 OsJ_29138 OSNPB_090372900 ENOG411DZSF DGAT1 Q9SLD2 DGAT1_ARATH Diacylglycerol O-acyltransferase 1 (AtDGAT1) (EC 2.3.1.20) (Protein TRIACYLGLYCEROL 1) DISRUPTION PHENOTYPE: Decreased oil content and modified size and shape of oil bodies. {ECO:0000269|PubMed:20040537}. Embryo defective; Cotyledon; Wrinkled seeds; Delayed germination; Abnormal triacylglycerol levels and fatty acid composition in seeds-D. Taylor-1999 FUNCTION: Major contributor to triacylglycerol (TAG) synthesis and oil accumulation in seeds. Catalyzes the acylation of the sn-3 hydroxy group of sn-1,2-diacylglycerol using acyl-CoA (PubMed:10571850, PubMed:10580283, PubMed:10601854, PubMed:11402213, PubMed:12114588, PubMed:20040537, PubMed:20101470). Can use palmitoyl-CoA and oleoyl-CoA as substrates (PubMed:20101470). Can use oleoyl-CoA and linoleoyl-CoA as substrates. Has substrate preference for oleoyl-CoA compared to linoleoyl-CoA (PubMed:23770095). Has complementary functions with PDAT1 that are essential for triacylglycerol synthesis and normal development of both seeds and pollen (PubMed:20040537). {ECO:0000269|PubMed:10571850, ECO:0000269|PubMed:10580283, ECO:0000269|PubMed:10601854, ECO:0000269|PubMed:11402213, ECO:0000269|PubMed:12114588, ECO:0000269|PubMed:20040537, ECO:0000269|PubMed:20101470, ECO:0000269|PubMed:23770095}. MISCELLANEOUS: The AS11 mutant has a complete duplication of exon 2.; MISCELLANEOUS: DGAT1 deficiency alters carbohydrate metabolism. PATHWAY: Glycerolipid metabolism; triacylglycerol biosynthesis. MetaCyc:MONOMER-2081; R-ATH-1482883;R-ATH-6798695;R-ATH-75109; 2.3.1.20; Fat digestion and absorption (04975),Metabolic pathways (01100),Retinol metabolism (00830),Glycerolipid metabolism (00561) 2.3.1.20 58986 Diacylglycerol O-acyltransferase 1 (AtDGAT1) (EC 2.3.1.20) (Protein TRIACYLGLYCEROL 1) chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; membrane [GO:0016020]; diacylglycerol O-acyltransferase activity [GO:0004144]; aging [GO:0007568]; carbohydrate metabolic process [GO:0005975]; embryo development ending in seed dormancy [GO:0009793]; glycerol metabolic process [GO:0006071]; positive regulation of seed germination [GO:0010030]; regulation of embryonic development [GO:0045995]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to glucose [GO:0009749]; response to salt stress [GO:0009651]; triglyceride biosynthetic process [GO:0019432] DEVELOPMENTAL STAGE: Peak of expression in seeds 15 days after flowering. Highly expressed in senescing leaves. {ECO:0000269|PubMed:12177474, ECO:0000269|PubMed:20101470}. TISSUE SPECIFICITY: Ubiquitous. Highest expression in young developing seeds. {ECO:0000269|PubMed:10571850, ECO:0000269|PubMed:12825687, ECO:0000269|PubMed:20040537, ECO:0000269|PubMed:20101470}. locus:2047665; AT2G19450 O-acyltransferase Diacylglycerol O-acyltransferase 1-2 (OsDGAT1-2) (EC 2.3.1.20) A0A0P0WY03 DAT12_ORYSJ DGAT1-2 Os06g0563900 LOC_Os06g36800 P0656E03.36 FUNCTION: Involved in triacylglycerol (TAG) synthesis. Catalyzes the acylation of the sn-3 hydroxy group of sn-1,2-diacylglycerol using acyl-CoA. {ECO:0000250|UniProtKB:Q5GKZ7}. ENOG411DZSR HRA1 Q8RWY5 Q8RWY5_ARATH Sequence-specific DNA binding transcription factor (Uncharacterized protein At3g10040) 48870 Sequence-specific DNA binding transcription factor (Uncharacterized protein At3g10040) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of gene expression [GO:0010629]; regulation of cellular response to hypoxia [GO:1900037]; regulation of transcription, DNA-templated [GO:0006355] locus:2100093; AT3G10040 NA NA NA NA NA NA NA NA ENOG411DZSQ Q949S4,Q949S6 Q949S4_ARATH,Q949S6_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g14340),NAD(P)-linked oxidoreductase superfamily protein (Uncharacterized protein At1g14345) 26415,21224 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g14340),NAD(P)-linked oxidoreductase superfamily protein (Uncharacterized protein At1g14345) RNA binding [GO:0003723],chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020] locus:2012567;,locus:505006122; AT1G14340,AT1G14345 RNA recognition motif containing protein Os04g0641400 protein (Fragment) A0A0N7KJS9,A0A0P0WFE2,A0A0P0WFG4 A0A0N7KJS9_ORYSJ,A0A0P0WFE2_ORYSJ,A0A0P0WFG4_ORYSJ Os04g0641400 OSNPB_040641400 ENOG411E0V7 pdl2,CELLULOSE SYNTHASE LIKE B5 Q6QJ72,A0A1P8AWX1 Q6QJ72_ARATH,A0A1P8AWX1_ARATH PCD/DCoH-like protein 2 (Transcriptional coactivator/pterin dehydratase),Transcriptional coactivator/pterin dehydratase FUNCTION: Involved in tetrahydrobiopterin biosynthesis (By similarity). Possesses pterin-4-alpha-carbinolamine dehydratase activity when expressed in a bacterial heterolgous system (PubMed:18245455). {ECO:0000250|UniProtKB:P61457, ECO:0000269|PubMed:18245455}. 21063,16381 PCD/DCoH-like protein 2 (Transcriptional coactivator/pterin dehydratase),Transcriptional coactivator/pterin dehydratase 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [GO:0008124]; tetrahydrobiopterin biosynthetic process [GO:0006729] locus:2019297; AT1G29810 Pterin-4-alpha-carbinolamine Os01g0663500 protein (PCD/DCoH-like protein 2-like) (cDNA clone:001-015-H04, full insert sequence) (cDNA clone:006-306-A12, full insert sequence) Q5SN39 Q5SN39_ORYSJ Os01g0663500 Os01g0663500 OsJ_02913 OSNPB_010663500 P0671D01.42 ENOG411E0V1 KAPP P46014,F4K124 P2C70_ARATH,F4K124_ARATH Protein phosphatase 2C 70 (AtPP2C70) (EC 3.1.3.16) (Kinase-associated protein phosphatase) (Protein ROOT ATTENUATED GROWTH 1),Kinase associated protein phosphatase DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings show increased sensitivity of roots to salt stress. {ECO:0000269|PubMed:18162596}. FUNCTION: Dephosphorylates the Ser/Thr receptor-like kinase RLK5. May function as a signaling component in a pathway involving RLK5 (PubMed:15592873). Binds and dephosphorylates CLAVATA1 (CLV1). Functions as a negative regulator of the CLV1 signaling in plant development (PubMed:9294234, PubMed:9701578). Dephosphorylates SERK1 receptor kinase on threonine residues in the A-loop. Dephosphorylation of SERK1 controls SERK1 internalization (PubMed:12101128). Component of a signaling pathway which mediates adaptation to NaCl stress. Is not a component of the SALT OVERLY SENSITIVE (SOS) pathway (PubMed:18162596). {ECO:0000269|PubMed:12101128, ECO:0000269|PubMed:15592873, ECO:0000269|PubMed:18162596, ECO:0000269|PubMed:9294234, ECO:0000269|PubMed:9701578}. 3.1.3.16 64911,66059 Protein phosphatase 2C 70 (AtPP2C70) (EC 3.1.3.16) (Kinase-associated protein phosphatase) (Protein ROOT ATTENUATED GROWTH 1),Kinase associated protein phosphatase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; [pyruvate kinase]-phosphatase activity [GO:0050408]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine phosphatase activity [GO:0004722]; regulation of meristem structural organization [GO:0009934]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed in all tissues examined. locus:2150220; AT5G19280 kinase-associated protein phosphatase Os03g0173500 protein,Os07g0211400 protein (cDNA, clone: J090071I10, full insert sequence),Os03g0809700 protein (Protein phosphatase 2C containing protein, expressed) (Putative kinase-associated protein phosophatase) (cDNA clone:J023093B03, full insert sequence),Os03g0809700 protein (Fragment) Q0DUQ3,B7F9R3,Q6ATQ8,A0A0P0W565,A0A0P0VTY0 Q0DUQ3_ORYSJ,B7F9R3_ORYSJ,Q6ATQ8_ORYSJ,A0A0P0W565_ORYSJ,A0A0P0VTY0_ORYSJ Os03g0173500 Os03g0173500 OSNPB_030173500,Os07g0211400 OSNPB_070211400,OSJNBa0028F23.13 LOC_Os03g59530 Os03g0809700 OsJ_13055 OSNPB_030809700,Os03g0809700 OSNPB_030809700,Os03g0173500 OSNPB_030173500 ENOG411E0V0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase E1-E2 ATPase family protein, expressed (Os11g0485200 protein) (cDNA clone:J013156J19, full insert sequence),Os03g0107100 protein,Os11g0489600 protein Q2R471,A0A0P0VS26,A0A0P0Y2E1 Q2R471_ORYSJ,A0A0P0VS26_ORYSJ,A0A0P0Y2E1_ORYSJ Os11g0485200 LOC_Os11g29490 Os11g0485200 OsJ_33913 OSNPB_110485200,Os03g0107100 OSNPB_030107100,Os11g0489600 OSNPB_110489600 ENOG411E0V3 MZB10.11 Q9SS79,A0A1I9LSE9,A0A1I9LSE7,A0A1I9LSE8 Q9SS79_ARATH,A0A1I9LSE9_ARATH,A0A1I9LSE7_ARATH,A0A1I9LSE8_ARATH MZB10.11 protein (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein 112199,93978,116059,120496 MZB10.11 protein (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein locus:2095259; AT3G09080 mitogen-activated protein kinase-binding protein 1-like NA NA NA NA NA NA NA ENOG411E0V2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mitogen-activated protein kinase Mitogen-activated protein kinase 16 (MAP kinase 16) (EC 2.7.11.24),Mitogen-activated protein kinase 17 (MAP kinase 17) (EC 2.7.11.24) Q5VP69,Q6L5F7 MPK16_ORYSJ,MPK17_ORYSJ MPK16 Os01g0643800 LOC_Os01g45620 P0510C12.37 P0707D10.2,MPK17 Os05g0576800 LOC_Os05g50120 OJ1126_B10.5 ENOG411E0V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heat stress transcription factor Heat stress transcription factor C-2a (Heat stress transcription factor 5) (OsHsf-05) Q6EUG4 HFC2A_ORYSJ HSFC2A HSF05 Os02g0232000 LOC_Os02g13800 OJ1705_E12.15 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411E0V8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like Expressed protein (Os11g0144900 protein) (cDNA clone:J023039E10, full insert sequence),Os12g0141000 protein Q2RAN1,A0A0N7KTK1 Q2RAN1_ORYSJ,A0A0N7KTK1_ORYSJ Os11g0144900 LOC_Os11g04830 Os11g0144900 OSNPB_110144900,Os12g0141000 OSNPB_120141000 ENOG411E0VE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 Os01g0899200 protein (Fragment) Q0JGW4 Q0JGW4_ORYSJ Os01g0899200 Os01g0899200 OSNPB_010899200 ENOG411E0VD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain Os08g0497300 protein (Putative phosphatidylinositol-phosphatidylcholine transfer protein) (cDNA clone:J023046G11, full insert sequence),Os08g0497300 protein (Fragment),Os05g0239767 protein Q7F8U2,A0A0P0XHE7,A0A0P0XHJ4,A0A0P0WJM2 Q7F8U2_ORYSJ,A0A0P0XHE7_ORYSJ,A0A0P0XHJ4_ORYSJ,A0A0P0WJM2_ORYSJ Os08g0497300 Os08g0497300 OSNPB_080497300 P0026F07.16,Os08g0497300 OSNPB_080497300,Os05g0239767 OSNPB_050239767 ENOG411E0VG Q9SYK1 PPR11_ARATH Pentatricopeptide repeat-containing protein At1g05600 Embryo defective; Cotyledon-D. Meinke-2011 57269 Pentatricopeptide repeat-containing protein At1g05600 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2031998; AT1G05600 Pentatricopeptide repeat-containing protein Os01g0913800 protein (Fragment) A0A0P0VC08 A0A0P0VC08_ORYSJ Os01g0913800 OSNPB_010913800 ENOG411E0VF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Elongation factor Tu C-terminal domain NA NA NA NA NA NA NA ENOG411E0VA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-box FBD LRR-repeat protein Os07g0118900 protein (cDNA clone:J033023F16, full insert sequence),Os07g0548100 protein,Os07g0118800 protein (cDNA clone:002-174-B10, full insert sequence),Os07g0547700 protein,Os07g0547600 protein,Os07g0118800 protein (Fragment),Os07g0118900 protein (Fragment) Q7XIF2,A3BKX2,Q7XIF4,A0A0P0X785,A0A0P0X7P0,A0A0P0X1Q8,A0A0P0X1W5 Q7XIF2_ORYSJ,A3BKX2_ORYSJ,Q7XIF4_ORYSJ,A0A0P0X785_ORYSJ,A0A0P0X7P0_ORYSJ,A0A0P0X1Q8_ORYSJ,A0A0P0X1W5_ORYSJ P0022B05.103 OJ1119_A04.138 Os07g0118900 OSNPB_070118900,Os07g0548100 OsJ_24655 OSNPB_070548100,P0022B05.102-2 OJ1119_A04.137-2 Os07g0118800 OSNPB_070118800,Os07g0547700 OSNPB_070547700,Os07g0547600 OSNPB_070547600,Os07g0118800 OSNPB_070118800,Os07g0118900 OSNPB_070118900 ENOG411E0VC LGALDH O81884 GALDH_ARATH L-galactose dehydrogenase (At-GalDH) (L-GalDH) (EC 1.1.1.316) DISRUPTION PHENOTYPE: Lower leaf ascorbate concentration with accumulation of L-galactose when grown under high light conditions. {ECO:0000269|PubMed:12047629}. FUNCTION: Catalyzes the oxidation of L-galactose to L-galactono-1,4-lactone in the presence of NAD(+). Uses NAD(+) as a hydrogen acceptor much more efficiently than NADP(+). {ECO:0000269|PubMed:12047629}. ARA:AT4G33670-MONOMER;MetaCyc:AT4G33670-MONOMER; 1.1.1.316; 1.1.1.316 34532 L-galactose dehydrogenase (At-GalDH) (L-GalDH) (EC 1.1.1.316) cytosol [GO:0005829]; L-galactose dehydrogenase activity [GO:0010349]; galactose metabolic process [GO:0006012]; L-ascorbic acid biosynthetic process [GO:0019853] locus:2134228; AT4G33670 L-galactose dehydrogenase Os12g0482700 protein (Oxidoreductase, aldo/keto reductase family protein, expressed) (cDNA clone:001-011-B02, full insert sequence) (cDNA clone:J013091L23, full insert sequence) Q2QQV2 Q2QQV2_ORYSJ LOC_Os12g29760 Os12g0482700 OsJ_36099 OSNPB_120482700 ENOG411E0VB Q8RXV2 Q8RXV2_ARATH Acid phosphatase/vanadium-dependent haloperoxidase-related protein (Uncharacterized protein At3g61770) 31088 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (Uncharacterized protein At3g61770) integral component of membrane [GO:0016021]; peroxidase activity [GO:0004601] locus:2076790; AT3G61770 Divergent PAP2 family Os05g0534100 protein A0A0P0WPY1 A0A0P0WPY1_ORYSJ Os05g0534100 OSNPB_050534100 ENOG411E0VM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os07g0169700 protein (Putative gibberellin 20-dioxygenase) Q69LD8 Q69LD8_ORYSJ Os07g0169700 Os07g0169700 OSJNBa0050F10.19 OSNPB_070169700 ENOG411E0VN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Purple acid phosphatase (EC 3.1.3.2) Q2R2T5 Q2R2T5_ORYSJ LOC_Os11g34720 Os11g0549620 OsJ_34212 OSNPB_110549620 ENOG411E0VI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphoenolpyruvate carboxylase kinase Os02g0625300 protein (Phosphoenolpyruvate carboxylase kinase),Os04g0517500 protein Q2ABR6,A0A0N7KJD3 Q2ABR6_ORYSJ,A0A0N7KJD3_ORYSJ OsPPCK2L Os02g0625300 OSNPB_020625300,Os04g0517500 OSNPB_040517500 ENOG411E0VH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Nucleolin 1 (Protein NUCLEOLIN LIKE 1),Os08g0192900 protein (Fragment) Q6Z1C0,A0A0P0XCR2 NUCL1_ORYSJ,A0A0P0XCR2_ORYSJ Os08g0192900 LOC_Os08g09350 OsJ_26324 OSJNBa0056O06.24,Os08g0192900 OSNPB_080192900 FUNCTION: Involved in pre-rRNA processing and ribosome assembly. {ECO:0000250}. ENOG411E0VK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E0VJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN NA NA NA NA NA NA NA ENOG411E0VV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0102200 protein Q0D978 Q0D978_ORYSJ Os07g0102200 Os07g0102200 OSNPB_070102200 ENOG411E0VQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM NA NA NA NA NA NA NA ENOG411E0VP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0310800 protein,Os01g0310500 protein A0A0P0V290,A0A0N7KCU3 A0A0P0V290_ORYSJ,A0A0N7KCU3_ORYSJ Os01g0310800 OSNPB_010310800,Os01g0310500 OSNPB_010310500 ENOG411E0VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glucan endo-1-3-beta-glucosidase Os07g0539300 protein (Putative beta-1,3-glucanase) (cDNA clone:J013058G09, full insert sequence),Os07g0539900 protein (cDNA clone:J013047P08, full insert sequence) (cDNA clone:J013047P11, full insert sequence),Os07g0539300 protein (Putative beta-1,3-glucanase),Os07g0539100 protein (Putative beta-1,3-glucanase) (cDNA clone:001-046-A08, full insert sequence) (cDNA clone:J013097O21, full insert sequence),Os07g0538000 protein (Putative beta-1,3-glucanase),Os07g0539400 protein,Os08g0244500 protein,Os07g0538900 protein,Os07g0538966 protein Q6YVU4,Q0D5S1,Q6YVU3,Q6YVU7,Q6YVW0,A0A0P0X7J0,A0A0P0XDW1,A0A0P0X725,A0A0N7KNL4 Q6YVU4_ORYSJ,Q0D5S1_ORYSJ,Q6YVU3_ORYSJ,Q6YVU7_ORYSJ,Q6YVW0_ORYSJ,A0A0P0X7J0_ORYSJ,A0A0P0XDW1_ORYSJ,A0A0P0X725_ORYSJ,A0A0N7KNL4_ORYSJ P0696F12.36-1 Os07g0539300 OSNPB_070539300,Os07g0539900 Os07g0539900 OSNPB_070539900,P0696F12.36-2 Os07g0539300 OSNPB_070539300,Os07g0539100 Os07g0539100 OSNPB_070539100 P0696F12.28,Os07g0538000 OJ1058_A12.142 Os07g0538000 OsJ_24583 OSNPB_070538000 P0696F12.4,Os07g0539400 OSNPB_070539400,Os08g0244500 OSNPB_080244500,Os07g0538900 OSNPB_070538900,Os07g0538966 OSNPB_070538966 ENOG411E0VR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os01g0930900 protein (Putative tropinone reductase homolog),Os01g0931000 protein Q942W0,A0A0P0VCB4 Q942W0_ORYSJ,A0A0P0VCB4_ORYSJ Os01g0930900 OSJNBa0052O12.36 OSNPB_010930900 P0506E04.14,Os01g0931000 OSNPB_010931000 ENOG411E0VY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0547000 protein (Putative RPR1) (cDNA clone:J023090D06, full insert sequence),Os10g0162832 protein,Os10g0162846 protein (Fragment) Q8RYR1,A0A0P0XSQ3,A0A0P0XRV1 Q8RYR1_ORYSJ,A0A0P0XSQ3_ORYSJ,A0A0P0XRV1_ORYSJ Os01g0547000 Os01g0547000 OsJ_02163 OSJNBa0026J14.26 OSNPB_010547000,Os10g0162832 OSNPB_100162832,Os10g0162846 OSNPB_100162846 ENOG411E0VX ETL1 Q9ZUL5 CHR19_ARATH Protein CHROMATIN REMODELING 19 (AtCHR19) (EC 3.6.4.-) (AtRAD54-like protein) FUNCTION: DNA helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity and is both required for DNA repair and heterochromatin organization. Promotes DNA end resection of double-strand breaks (DSBs) following DNA damage: probably acts by weakening histone DNA interactions in nucleosomes flanking DSBs (By similarity). Probable chromatin remodeling factor. Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. May be involved in nucleosome positioning to form ordered nucleosome arrays on chromatin (PubMed:25420628). {ECO:0000250|UniProtKB:P31380, ECO:0000269|PubMed:25420628, ECO:0000303|PubMed:16547115}. MISCELLANEOUS: Induction by the mutagens rose Bengal (RB) and methyl methane sulfonate (MMS) is enhanced in progeny of Chernobyl plants exposed to ionizing radiation thus leading to a higher resistance to DNA damages. {ECO:0000269|PubMed:15133154}. 3.6.4.- 86277 Protein CHROMATIN REMODELING 19 (AtCHR19) (EC 3.6.4.-) (AtRAD54-like protein) nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to UV-C [GO:0071494]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; gene silencing by RNA [GO:0031047]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2051678; AT2G02090 SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box NA NA NA NA NA NA NA ENOG411E0VZ T20O10_190 Q9LYB3 Q9LYB3_ARATH Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein At3g63090) (Uncharacterized protein T20O10_190) 47811 Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein At3g63090) (Uncharacterized protein T20O10_190) hydrolase activity [GO:0016787] locus:2099257; AT3G63090 Plant organelle RNA recognition domain Os01g0293200 protein Q5JNR9 Q5JNR9_ORYSJ Os01g0293200 OsJ_01401 OSNPB_010293200 P0706B05.45 ENOG411ECS5 O49427 O49427_ARATH At4g20000 (Uncharacterized protein AT4g20000) (Uncharacterized protein At4g20000/F18F4_100) (VQ motif-containing protein) 23252 At4g20000 (Uncharacterized protein AT4g20000) (Uncharacterized protein At4g20000/F18F4_100) (VQ motif-containing protein) locus:2119757; AT4G20000 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411DS25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0668900 protein Q8H3R0 Q8H3R0_ORYSJ P0625E02.115 Os07g0668900 OsJ_25509 OSNPB_070668900 ENOG411DS24 BCE2 Q9M7Z1 ODB2_ARATH Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (EC 2.3.1.168) (Branched-chain alpha-keto acid dehydrogenase complex component E2) (BCE2) (BCKAD-E2) (BCKADE2) (Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex) (Dihydrolipoamide branched chain transacylase) (Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase) (Protein DARK INDUCIBLE 3) FUNCTION: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Within this complex, the catalytic function of this enzyme is to accept, and to transfer to coenzyme A, acyl groups that are generated by the branched-chain alpha-keto acid decarboxylase component (By similarity). Required during sugar starvation and acts under the control of a sugar-sensing mechanism involving Ser/Thr kinases and phosphatases. {ECO:0000250, ECO:0000269|PubMed:11080291, ECO:0000269|PubMed:11917081}. R-ATH-70895; 2.3.1.168 52706 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (EC 2.3.1.168) (Branched-chain alpha-keto acid dehydrogenase complex component E2) (BCE2) (BCKAD-E2) (BCKADE2) (Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex) (Dihydrolipoamide branched chain transacylase) (Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase) (Protein DARK INDUCIBLE 3) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; acetyltransferase activity [GO:0016407]; dihydrolipoamide branched chain acyltransferase activity [GO:0004147]; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity [GO:0043754]; zinc ion binding [GO:0008270]; cellular response to sucrose starvation [GO:0043617]; fatty acid biosynthetic process [GO:0006633]; response to absence of light [GO:0009646]; response to sucrose [GO:0009744] DEVELOPMENTAL STAGE: Barely detected in non senescent green leaves, accumulated slightly at the early stage of leaf senescence and strongly expressed at the late stage of leaf senescence. {ECO:0000269|PubMed:10681595}. TISSUE SPECIFICITY: Expressed in the non-photosynthetic organs such as siliques, flowers and roots. {ECO:0000269|PubMed:10681595}. locus:2083358; AT3G06850 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.-) Q655Q2 Q655Q2_ORYSJ Os01g0314100 B1011A07.49 OsJ_01492 OSNPB_010314100 ENOG411DS27 CytHPPK/DHPS,MitHPPK/DHPS Q1ENB6,Q9SZV3 FOLC_ARATH,FOLM_ARATH Folate synthesis bifunctional protein [Includes: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) (EC 2.7.6.3) (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (PPPK); Dihydropteroate synthase (DHPS) (EC 2.5.1.15)],Folate synthesis bifunctional protein, mitochondrial [Includes: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) (EC 2.7.6.3) (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase); Dihydropteroate synthase (DHPS) (EC 2.5.1.15)] DISRUPTION PHENOTYPE: No visible phenotype (PubMed:17289662). Increased sensitivity to oxidative stress (PubMed:21996493). {ECO:0000269|PubMed:17289662, ECO:0000269|PubMed:21996493}. no visible phenotype. Mutant seeds displayed reduced germination rates. A modest but significant decrease of 5-CH3-PteGlu(n) and 5-CHO-PteGlu(n) (by 11 and 33% respectively) was observed in dry seeds of the mutant as compared with the wild-type resulting in a decrease in total folate content by 11% Germination sensitive to hydrogen peroxide, mannitol, and salt-D. Van Der Straeten-2007 FUNCTION: Catalyzes the first two consecutive steps of tetrahydrofolate biosynthesis (PubMed:17289662). Plays a role in seed stress response and survival (PubMed:17289662, PubMed:21996493). {ECO:0000269|PubMed:17289662, ECO:0000269|PubMed:21996493}.,FUNCTION: Catalyzes the first two consecutive steps of tetrahydrofolate biosynthesis. {ECO:0000250|UniProtKB:O04862}. PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 4/4. {ECO:0000305}.; PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 7,8-dihydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate: step 1/2. {ECO:0000305}. ARA:AT1G69190-MONOMER;,ARA:AT4G30000-MONOMER; 2.5.1.15; 2.7.6.3; 2.5.1.15 54110,60738 Folate synthesis bifunctional protein [Includes: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) (EC 2.7.6.3) (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (PPPK); Dihydropteroate synthase (DHPS) (EC 2.5.1.15)],Folate synthesis bifunctional protein, mitochondrial [Includes: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) (EC 2.7.6.3) (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase); Dihydropteroate synthase (DHPS) (EC 2.5.1.15)] cytosol [GO:0005829]; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [GO:0003848]; ATP binding [GO:0005524]; dihydropteroate synthase activity [GO:0004156]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; folic acid biosynthetic process [GO:0046656]; response to oxidative stress [GO:0006979]; tetrahydrofolate biosynthetic process [GO:0046654],mitochondrion [GO:0005739]; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [GO:0003848]; ATP binding [GO:0005524]; dihydropteroate synthase activity [GO:0004156]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; folic acid biosynthetic process [GO:0046656]; tetrahydrofolate biosynthetic process [GO:0046654] DEVELOPMENTAL STAGE: Expressed in early stages of seed development, until the late globular stage of embryo. Not detected at the heart stage of embryo development. {ECO:0000269|PubMed:17289662}. TISSUE SPECIFICITY: Expressed exclusively in reproductive tissues. {ECO:0000269|PubMed:17289662}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17289662}. locus:2026471;,locus:2126465; AT1G69190,AT4G30000 folic acid synthesis protein Os07g0618500 protein (Putative dihydropterin pyrophosphokinase /dihydropteroate synthase) (cDNA clone:J013170L10, full insert sequence),Os07g0618500 protein (Fragment) Q7X7X0,A0A0P0X8V4 Q7X7X0_ORYSJ,A0A0P0X8V4_ORYSJ P0552F09.130-1 B1056G08.147-1 P0560B08.103-1 Os07g0618500 OSNPB_070618500,Os07g0618500 OSNPB_070618500 ENOG411DS26 VPS36 Q9FF81 VPS36_ARATH Vacuolar protein sorting-associated protein 36 (AtVPS36) (ESCRT-II complex subunit VPS36) FUNCTION: Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex (By similarity). {ECO:0000250}. R-ATH-917729; 49034 Vacuolar protein sorting-associated protein 36 (AtVPS36) (ESCRT-II complex subunit VPS36) early endosome [GO:0005769]; ESCRT II complex [GO:0000814]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; phosphatidylinositol-3-phosphate binding [GO:0032266]; ubiquitin binding [GO:0043130]; embryo development ending in seed dormancy [GO:0009793]; multivesicular body sorting pathway [GO:0071985]; protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328]; seedling development [GO:0090351]; vacuole organization [GO:0007033] locus:2175274; AT5G04920 vacuolar protein Os01g0813500 protein (cDNA clone:J033043F13, full insert sequence) Q5N773 Q5N773_ORYSJ Os01g0813500 OsJ_03845 OSJNBa0085D07.11 OSNPB_010813500 ENOG411DS23 F4JD69,A0A1I9LN88,A0A1I9LN87,A0A1I9LN89,F4JD68 F4JD69_ARATH,A0A1I9LN88_ARATH,A0A1I9LN87_ARATH,A0A1I9LN89_ARATH,F4JD68_ARATH Transducin/WD40 repeat-like superfamily protein 141713,136933,146020,138328,141410 Transducin/WD40 repeat-like superfamily protein signal transduction [GO:0007165] locus:2077607; AT3G06880 WD domain G-beta repeat Os05g0363500 protein (Fragment),Os05g0363566 protein A0A0P0WLE2,A0A0N7KKM4 A0A0P0WLE2_ORYSJ,A0A0N7KKM4_ORYSJ Os05g0363500 OSNPB_050363500,Os05g0363566 OSNPB_050363566 ENOG411DS29 GLCNAC1PUT1,GLCNAC1PUT2,GlcNAc1pUT1 Q940S3,O64765,F4I7V2 UAP1_ARATH,UAP2_ARATH,F4I7V2_ARATH UDP-N-acetylglucosamine diphosphorylase 1 (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridylyltransferase 1) (UDP-N-acetylgalactosamine diphosphorylase 1) (EC 2.7.7.83),UDP-N-acetylglucosamine diphosphorylase 2 (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridylyltransferase 2) (UDP-N-acetylgalactosamine diphosphorylase 2) (EC 2.7.7.83) (UTP--glucose-1-phosphate uridylyltransferase 2) (EC 2.7.7.9),N-acetylglucosamine-1-phosphate uridylyltransferase 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants glcnac1put1 and glcnac1put2 are lethal. {ECO:0000269|PubMed:25231969}. FUNCTION: Uridylyltransferase involved in the biosynthesis of UDP-glucosamine, an essential precursor for glycoprotein and glycolipid synthesis. Can use both UDP-glucosamine and the 4-epimer UDP-galactosamine as substrates, but no other sugars or NTPs (PubMed:20557289). Acts redundantly with GLCNAC1PUT2. Required for gametogenesis and embryo development (PubMed:25231969). {ECO:0000269|PubMed:20557289, ECO:0000269|PubMed:25231969}.,FUNCTION: Uridylyltransferase involved in the biosynthesis of UDP-glucosamine, an essential precursor for glycoprotein and glycolipid synthesis. Can use UDP-glucosamine, the 4-epimer UDP-galactosamine and UDP-glucose as substrates (PubMed:20557289). Acts redundantly with GLCNAC1PUT1. Required for gametogenesis and embryo development (PubMed:25231969). {ECO:0000269|PubMed:20557289, ECO:0000269|PubMed:25231969}. PATHWAY: Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; UDP-N-acetyl-alpha-D-glucosamine from N-acetyl-alpha-D-glucosamine 1-phosphate: step 1/1. ARA:AT1G31070-MONOMER;,ARA:AT2G35020-MONOMER;MetaCyc:AT2G35020-MONOMER; R-ATH-446210; 2.7.7.23; 2.7.7.23; 2.7.7.83,2.7.7.23; 2.7.7.83; 2.7.7.9 55992,55760,42444 UDP-N-acetylglucosamine diphosphorylase 1 (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridylyltransferase 1) (UDP-N-acetylgalactosamine diphosphorylase 1) (EC 2.7.7.83),UDP-N-acetylglucosamine diphosphorylase 2 (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridylyltransferase 2) (UDP-N-acetylgalactosamine diphosphorylase 2) (EC 2.7.7.83) (UTP--glucose-1-phosphate uridylyltransferase 2) (EC 2.7.7.9),N-acetylglucosamine-1-phosphate uridylyltransferase 1 cytosol [GO:0005829]; plasma membrane [GO:0005886]; UDP-N-acetylgalactosamine diphosphorylase activity [GO:0052630]; UDP-N-acetylglucosamine diphosphorylase activity [GO:0003977]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; UDP-N-acetylgalactosamine metabolic process [GO:0019276]; UDP-N-acetylglucosamine biosynthetic process [GO:0006048]; UDP-N-acetylglucosamine metabolic process [GO:0006047],cytosol [GO:0005829]; UDP-N-acetylgalactosamine diphosphorylase activity [GO:0052630]; UDP-N-acetylglucosamine diphosphorylase activity [GO:0003977]; UTP:glucose-1-phosphate uridylyltransferase activity [GO:0003983]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; UDP-glucose metabolic process [GO:0006011]; UDP-N-acetylgalactosamine metabolic process [GO:0019276]; UDP-N-acetylglucosamine biosynthetic process [GO:0006048]; UDP-N-acetylglucosamine metabolic process [GO:0006047],uridylyltransferase activity [GO:0070569]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in root tips, stipules and mature pollen grains. {ECO:0000269|PubMed:25231969}.,TISSUE SPECIFICITY: Expressed in root tips, stipules, lateral root primordia, immature anthers and at the branching points of the flowering shoots. {ECO:0000269|PubMed:25231969}. locus:2015791;,locus:2044787; AT1G31070,AT2G35020 UDP-N-acetylglucosamine Os08g0206900 protein (Putative UDP-N-acetylglucosamine pyrophosphorylase) (cDNA clone:J023091K19, full insert sequence),Os04g0613700 protein (Fragment) Q6ZJ97,A0A0P0WEM5 Q6ZJ97_ORYSJ,A0A0P0WEM5_ORYSJ Os08g0206900 OJ1119_C05.25 OJ1734_E04.4 OSNPB_080206900,Os04g0613700 OSNPB_040613700 ENOG411DS28 Q9SZZ6,Q9SZZ4 Q9SZZ6_ARATH,Q9SZZ4_ARATH At4g25680 (PPPDE putative thiol peptidase family protein) (Uncharacterized protein AT4g25680) (Uncharacterized protein L73G19.60),At4g25660 (PPPDE putative thiol peptidase family protein) (Uncharacterized protein At4g25660) (Uncharacterized protein L73G19.40) 27803,28156 At4g25680 (PPPDE putative thiol peptidase family protein) (Uncharacterized protein AT4g25680) (Uncharacterized protein L73G19.60),At4g25660 (PPPDE putative thiol peptidase family protein) (Uncharacterized protein At4g25660) (Uncharacterized protein L73G19.40) locus:2131371;,locus:2131411; AT4G25680,AT4G25660 ethylene-responsive element-binding protein Expressed protein (Os10g0533900 protein) (cDNA clone:006-312-A10, full insert sequence) (cDNA clone:J033043D19, full insert sequence) Q8LN31 Q8LN31_ORYSJ LOC_Os10g38970 Os10g0533900 OsJ_32269 OSJNBa0053C23.5 OSNPB_100533900 ENOG411DS2T ERF6 Q8VZ91 EF103_ARATH Ethylene-responsive transcription factor 6 (AtERF6) (Ethylene-responsive element-binding factor 6) (EREBP-6) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. 32108 Ethylene-responsive transcription factor 6 (AtERF6) (Ethylene-responsive element-binding factor 6) (EREBP-6) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell division [GO:0051301]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; response to high light intensity [GO:0009644]; response to reactive oxygen species [GO:0000302]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944] locus:2129106; AT4G17490 transcription factor OSJNBa0065H10.2 protein (OSJNBa0079A21.17 protein) (Os04g0547500 protein),Ap26 (OSJNBa0065H10.3 protein) (OSJNBa0079A21.18 protein) (Os04g0547600 protein) (cDNA clone:002-155-E09, full insert sequence) Q7XSD2,Q7XAD5 Q7XSD2_ORYSJ,Q7XAD5_ORYSJ OSJNBa0079A21.17 Os04g0547500 OSJNBa0065H10.2 OSNPB_040547500,OSJNBa0079A21.18 OSJNBa0065H10.3 Os04g0547600 OsJ_15674 OSNPB_040547600 ENOG411DS2S ABH1 Q9SIU2 NCBP1_ARATH Nuclear cap-binding protein subunit 1 (80 kDa nuclear cap-binding protein) (AtCBP80) (NCBP 80 kDa subunit) (Abscisic acid-hypersensitive protein 1) (ABA-hypersensitive protein 1) (Protein ENSALADA) DISRUPTION PHENOTYPE: Stomatal closing and reduced wilting during drought due to abscisic acid-hypersensitivity in early abscisic acid signaling. Abscisic acid-hypersensitive cytosolic calcium increases in guard cells. {ECO:0000269|PubMed:11525733}. Resistant to drought; Abnormal stomatal regulation in response to ABA-J. Schroeder-2001 FUNCTION: Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, ABH1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of CBP20 and lock the CBC into a high affinity cap-binding state with the cap structure. Involved in flowering regulation, possibly by regulating pre-mRNA splicing of FLC gene. Acts as a negative regulator of abscisic acid signaling in guard cells. {ECO:0000269|PubMed:11525733, ECO:0000269|PubMed:12427994, ECO:0000269|PubMed:18486559, ECO:0000269|PubMed:18550839, ECO:0000269|PubMed:18829588}. MISCELLANEOUS: In contrast to other organisms, the CBC complex is apparently not essential for nonsense-mediated mRNA decay (NMD) in Arabidopsis. R-ATH-113418;R-ATH-674695;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-77595;R-ATH-975956;R-ATH-975957; 96548 Nuclear cap-binding protein subunit 1 (80 kDa nuclear cap-binding protein) (AtCBP80) (NCBP 80 kDa subunit) (Abscisic acid-hypersensitive protein 1) (ABA-hypersensitive protein 1) (Protein ENSALADA) cytoplasm [GO:0005737]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA cap binding complex [GO:0005845]; nuclear cap binding complex [GO:0005846]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; RNA cap binding [GO:0000339]; 7-methylguanosine mRNA capping [GO:0006370]; long-day photoperiodism, flowering [GO:0048574]; mRNA cis splicing, via spliceosome [GO:0045292]; mRNA export from nucleus [GO:0006406]; mRNA splicing, via spliceosome [GO:0000398]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; primary miRNA processing [GO:0031053]; response to abscisic acid [GO:0009737]; RNA splicing, via endonucleolytic cleavage and ligation [GO:0000394] TISSUE SPECIFICITY: Expressed in all tissues analyzed, including roots, stems, leaves and flowers. {ECO:0000269|PubMed:11867224, ECO:0000269|PubMed:12427994}. locus:2054137; AT2G13540 Nuclear cap-binding protein subunit Nuclear cap-binding protein subunit 1 (80 kDa nuclear cap-binding protein) (CBP80) (NCBP 80 kDa subunit),Os03g0347200 protein (Fragment) Q10LJ0,A0A0P0VXC8,A0A0P0VXC6 NCBP1_ORYSJ,A0A0P0VXC8_ORYSJ,A0A0P0VXC6_ORYSJ ABH1 CBP80 Os03g0347200 LOC_Os03g22570 OsJ_10823,Os03g0347200 OSNPB_030347200 FUNCTION: Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, ABH1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of CBP20 and lock the CBC into a high affinity cap-binding state with the cap structure (By similarity). {ECO:0000250}. ENOG411DS2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Laccase-7 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 7) (Diphenol oxidase 7) (Urishiol oxidase 7),Laccase LAC5-4-like protein (Os01g0850700 protein) (cDNA clone:001-040-B06, full insert sequence) Q5N7B4,Q5N7B3 LAC7_ORYSJ,Q5N7B3_ORYSJ LAC7 Os01g0850700 LOC_Os01g63190 OsJ_003987 OsJ_04091 P0414E03.33-1 P0529H11.22-1,P0529H11.22-2 Os01g0850700 P0414E03.33-2 OSNPB_010850700 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411DS2D CER2,CER26,CER26L Q39048,Q9SVM9,Q9LIS1 CER2_ARATH,CER26_ARATH,CR26L_ARATH Protein ECERIFERUM 2,Protein ECERIFERUM 26 (CER2-like protein 1) (CER2-like1),Protein ECERIFERUM 26-like (CER26-like) (CER2-like protein 2) (CER2-like2) DISRUPTION PHENOTYPE: Bright green and glossy stems and siliques due to low abundance of cuticular wax. Increased levels of C26 and C28 alcohols and disappearance of C29 alkane and C30 alcohol in the stem wax. {ECO:0000269|PubMed:17376164, ECO:0000269|PubMed:8820603, ECO:0000269|PubMed:9390429}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased levels of C29 alkane and reduced levels of C31 alkane in the rosette leaf wax. {ECO:0000269|PubMed:22930748, ECO:0000269|PubMed:23384041}. Bright green stems, inflorescences, and siliques-P. Schnable-1996 FUNCTION: Involved in biosynthesis of the epicuticular wax. Plays a role in very-long-chain fatty acid (VLCFA) biosynthesis and is required for C28 fatty acid elongation in stem. Despite its classification as a BAHD acyltransferase based on sequence homology, CER2 does not seem to share the catalytic mechanism of the members of the BAHD family. {ECO:0000269|PubMed:17376164, ECO:0000269|PubMed:22930748, ECO:0000269|PubMed:23384041}.,FUNCTION: Involved in biosynthesis of the epicuticular wax. Plays a role in very-long-chain fatty acid (VLCFA) biosynthesis and is required for C30 fatty acid elongation in leaf. Despite its classification as a BAHD acyltransferase based on sequence homology, CER26 does not seem to share the catalytic mechanism of the members of the BAHD family. {ECO:0000269|PubMed:22930748, ECO:0000269|PubMed:23384041}.,FUNCTION: Involved in biosynthesis of the epicuticular wax. Plays a role in very-long-chain fatty acid (VLCFA) biosynthesis and is required for VLCFA elongation in leaf. Despite its classification as a BAHD acyltransferase based on sequence homology, CER26L does not seem to share the catalytic mechanism of the members of the BAHD family (By similarity). {ECO:0000250}. 47238,47455,46429 Protein ECERIFERUM 2,Protein ECERIFERUM 26 (CER2-like protein 1) (CER2-like1),Protein ECERIFERUM 26-like (CER26-like) (CER2-like protein 2) (CER2-like2) endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; cell wall organization [GO:0071555]; pollen development [GO:0009555]; very long-chain fatty acid biosynthetic process [GO:0042761]; wax biosynthetic process [GO:0010025],cytosol [GO:0005829]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; cell wall organization [GO:0071555]; very long-chain fatty acid biosynthetic process [GO:0042761]; wax biosynthetic process [GO:0010025],chloroplast thylakoid membrane [GO:0009535]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; cell wall organization [GO:0071555]; pollen development [GO:0009555]; very long-chain fatty acid biosynthetic process [GO:0042761] TISSUE SPECIFICITY: Expressed at high levels in the epidermis of stems and young siliques. Expressed in flowers. {ECO:0000269|PubMed:23384041, ECO:0000269|PubMed:8820603}.,TISSUE SPECIFICITY: Highly expressed in leaves. {ECO:0000269|PubMed:22930748, ECO:0000269|PubMed:23384041}.,TISSUE SPECIFICITY: Highly expressed in flowers. Expressed in leaves. {ECO:0000269|PubMed:22930748, ECO:0000269|PubMed:23384041}. locus:2005499;,locus:2119480;,locus:2076136; AT4G24510,AT4G13840,AT3G23840 Transferase family Os04g0611200 protein (Fragment),Os04g0611267 protein A0A0P0WER7,A0A0P0WEK4 A0A0P0WER7_ORYSJ,A0A0P0WEK4_ORYSJ Os04g0611200 OSNPB_040611200,Os04g0611267 OSNPB_040611267 ENOG411DS2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif Os01g0300900 protein (Putative p40),Os01g0300900 protein (Fragment) Q94D04,A0A0P0V207 Q94D04_ORYSJ,A0A0P0V207_ORYSJ Os01g0300900 Os01g0300900 OSNPB_010300900 P0682B08.20,Os01g0300900 OSNPB_010300900 ENOG411DS2A ZIP4 B0M1H3 ZIP4L_ARATH TPR repeat-containing protein ZIP4 (Protein SPO22 homolog) (AtSPO22) (Protein ZIP4 homolog) (AtZIP4) DISRUPTION PHENOTYPE: Short siliques and low fertility due to defect in meiosis. {ECO:0000269|PubMed:17530928}. FUNCTION: Required for meiotic chromosome segregation. It is involved in interference-sensitive crossovers (class I meiotic crossover) formation, in both male and female meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover). Not required for synapsis completion. {ECO:0000269|PubMed:17530928, ECO:0000269|PubMed:18348867}. 103743 TPR repeat-containing protein ZIP4 (Protein SPO22 homolog) (AtSPO22) (Protein ZIP4 homolog) (AtZIP4) chloroplast [GO:0009507]; chromosome [GO:0005694]; nucleus [GO:0005634]; female meiotic nuclear division [GO:0007143]; male meiotic nuclear division [GO:0007140]; resolution of meiotic recombination intermediates [GO:0000712] locus:2165991; AT5G48390 Meiosis protein SPO22/ZIP4 like TPR repeat-containing protein ZIP4 (Protein ZIP4 homolog),Os01g0890900 protein Q5N829,A0A0N7KE78 ZIP4L_ORYSJ,A0A0N7KE78_ORYSJ ZIP4 Os01g0890900 LOC_Os01g66690 B1078G07.1 B1099D03.58 OsJ_04366,Os01g0890900 OSNPB_010890900 DISRUPTION PHENOTYPE: Complete loss of fertility due to defect in meiosis. {ECO:0000269|PubMed:22393242}. FUNCTION: Required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover) and works cooperatively with MER3 to promote crossovers. {ECO:0000269|PubMed:22393242}. ENOG411DS2C BIO2 P54967 BIOB_ARATH Biotin synthase, mitochondrial (EC 2.8.1.6) Embryo defective; Globular-D. Meinke-1998 PATHWAY: Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 2/2. 2.8.1.6 41682 Biotin synthase, mitochondrial (EC 2.8.1.6) mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 4 iron, 4 sulfur cluster binding [GO:0051539]; biotin synthase activity [GO:0004076]; zinc ion binding [GO:0008270]; biotin biosynthetic process [GO:0009102] locus:2005497; AT2G43360 biotin synthase Os08g0540100 protein (Putative biotin synthase) (cDNA clone:J033031K02, full insert sequence) Q69U93 Q69U93_ORYSJ P0666G10.131 Os08g0540100 OsJ_28119 OSNPB_080540100 ENOG411DS2B Q8VZT4,A0A1P8ARI3,F4I1G1 Q8VZT4_ARATH,A0A1P8ARI3_ARATH,F4I1G1_ARATH RNA polymerase II degradation factor-like protein (DUF1296) (Uncharacterized protein At1g29370),RNA polymerase II degradation factor-like protein (DUF1296) 90888,75997,90879 RNA polymerase II degradation factor-like protein (DUF1296) (Uncharacterized protein At1g29370),RNA polymerase II degradation factor-like protein (DUF1296) mRNA binding [GO:0003729] locus:2013713;,locus:2013693; AT1G29370,AT1G29350 function DUF1296 domain containing protein expressed Os05g0566900 protein (cDNA clone:J013044F07, full insert sequence) (cDNA clone:J013150C07, full insert sequence),Os01g0663800 protein (TA9 protein-like),Os01g0663800 protein (Fragment),Os05g0566900 protein (Fragment) Q688W7,Q5SN38,A0A0P0V676,A0A0P0WQK5 Q688W7_ORYSJ,Q5SN38_ORYSJ,A0A0P0V676_ORYSJ,A0A0P0WQK5_ORYSJ Os05g0566900 Os05g0566900 OJ1781_H11.10 OsJ_19573 OSNPB_050566900,P0671D01.44-1 P0003E08.2-1 Os01g0663800 OsJ_02914 OSNPB_010663800,Os01g0663800 OSNPB_010663800,Os05g0566900 OSNPB_050566900 ENOG411DS2M UBC35 A0A1P8ARI0 A0A1P8ARI0_ARATH Ubiquitin-conjugating enzyme 35 13617 Ubiquitin-conjugating enzyme 35 ATP binding [GO:0005524] ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411DS2I F4J2T9 F4J2T9_ARATH Ribosomal protein S5/Elongation factor G/III/V family protein 111953 Ribosomal protein S5/Elongation factor G/III/V family protein cytosol [GO:0005829]; ribosome [GO:0005840]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746] locus:2094548; AT3G22980 Elongation factor Elongation factor Tu family protein, putative, expressed (Os03g0650700 protein) (Putative Translation Elongation factor protein),Os11g0110800 protein Q53KX3,A0A0P0XXX9 Q53KX3_ORYSJ,A0A0P0XXX9_ORYSJ Os03g0650700 LOC_Os03g44780 Os03g0650700 OsJ_11922 OSNPB_030650700,Os11g0110800 OSNPB_110110800 ENOG411DS2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF642) OSJNBb0091E11.19 protein (Os04g0494950 protein),Os04g0495000 protein Q7XT45,A0A0P0WBZ8 Q7XT45_ORYSJ,A0A0P0WBZ8_ORYSJ OSJNBb0091E11.19 Os04g0494950 OSNPB_040494950,Os04g0495000 OSNPB_040495000 ENOG411DS2K MXA21.9,F28J7.1 Q9LY90,Q9SB70,Q9FF34,Q9S7U7,F4KA49 Q9LY90_ARATH,Q9SB70_ARATH,Q9FF34_ARATH,Q9S7U7_ARATH,F4KA49_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g14390) (Uncharacterized protein F18O22_180),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g24760) (Uncharacterized protein F22K18.40),Alpha/beta-Hydrolases superfamily protein (Emb|CAB87778.1) (Uncharacterized protein At5g38220),Alpha/beta-Hydrolases superfamily protein (At3g01690) (F28J7.1 protein) (F4P13.23 protein) (Uncharacterized protein At3g01690),Alpha/beta-Hydrolases superfamily protein 42345,41936,37404,41202,26646 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g14390) (Uncharacterized protein F18O22_180),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g24760) (Uncharacterized protein F22K18.40),Alpha/beta-Hydrolases superfamily protein (Emb|CAB87778.1) (Uncharacterized protein At5g38220),Alpha/beta-Hydrolases superfamily protein (At3g01690) (F28J7.1 protein) (F4P13.23 protein) (Uncharacterized protein At3g01690),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2145728;,locus:2122004;,locus:2176677;,locus:2082369; AT5G14390,AT4G24760,AT5G38220,AT3G01690 abhydrolase domain-containing protein Os02g0190800 protein (Putative Cgi67 serine protease) (cDNA clone:J013110H01, full insert sequence),Cgi67 serine protease-like (Os01g0689800 protein) (cDNA clone:J013134G21, full insert sequence),Expressed protein (Os12g0286600 protein) (cDNA clone:J023081N23, full insert sequence),Os02g0517000 protein Q6YUU0,Q5N7J6,Q2QTQ5,A0A0P0VJK2 Q6YUU0_ORYSJ,Q5N7J6_ORYSJ,Q2QTQ5_ORYSJ,A0A0P0VJK2_ORYSJ Os02g0190800 Os02g0190800 OSJNBb0031B09.25 OSNPB_020190800,Os01g0689800 OSNPB_010689800 P0519D04.53,LOC_Os12g18860 Os12g0286600 OsJ_35788 OSNPB_120286600,Os02g0517000 OSNPB_020517000 ENOG411DS2J TPR3 Q84JM4,F4K2T3 TPR3_ARATH,F4K2T3_ARATH Topless-related protein 3,TOPLESS-related 3 FUNCTION: Transcriptional corepressor. Negative regulator of jasmonate responses (By similarity). {ECO:0000250}. 122657,125563 Topless-related protein 3,TOPLESS-related 3 nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],primary shoot apical meristem specification [GO:0010072] locus:2148568; AT5G27030 Topless-related protein Protein TPR1 (Aberrant spikelet and panicle1-related 2) (Protein ASP1-RELATED 2) (OsASPR2) (Topless-related protein 1) (Topless-related protein 2) (OsTPR2) Q5NBT9 TPR1_ORYSJ TPR1 ASPR2 TPR2 Os01g0254100 LOC_Os01g15020 OsJ_01134 OSNPB_010254100 P0705D01.10-1 FUNCTION: Probable downstream regulator of strigolactones signaling. {ECO:0000250|UniProtKB:Q0J7U6}. ENOG411ECVS dl3430w O23334,Q9LUI6 O23334_ARATH,Q9LUI6_ARATH Kinase like protein (Protein kinase superfamily protein) (Putative kinase),Kinase-like protein (Protein kinase superfamily protein) (Uncharacterized protein At3g22750) 40725,42715 Kinase like protein (Protein kinase superfamily protein) (Putative kinase),Kinase-like protein (Protein kinase superfamily protein) (Uncharacterized protein At3g22750) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2130230;,locus:2094329; AT4G14780,AT3G22750 STYKc NA NA NA NA NA NA NA ENOG411DY1D Q8LG98 OTUBL_ARATH Ubiquitin thioesterase otubain-like (EC 3.4.19.12) (Deubiquitinating enzyme otubain-like) (Ubiquitin-specific-processing protease otubain-like) FUNCTION: Possible hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. {ECO:0000250}. ARA:AT1G28120-MONOMER; R-ATH-5689896; 3.4.19.12 34434 Ubiquitin thioesterase otubain-like (EC 3.4.19.12) (Deubiquitinating enzyme otubain-like) (Ubiquitin-specific-processing protease otubain-like) nucleus [GO:0005634]; NEDD8-specific protease activity [GO:0019784]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; ubiquitin binding [GO:0043130]; protein K48-linked deubiquitination [GO:0071108] locus:2010469; AT1G28120 ubiquitin thioesterase otubain-like Os08g0537800 protein (Fragment) Q0J434 Q0J434_ORYSJ Os08g0537800 Os08g0537800 OSNPB_080537800 ENOG411EHAY Q9SY36 Q9SY36_ARATH Uncharacterized protein AT4g03580 (Uncharacterized protein T5L23.7) 26342 Uncharacterized protein AT4g03580 (Uncharacterized protein T5L23.7) locus:2140660; AT4G03580 NA NA NA NA NA NA NA NA ENOG411EHAW ARL Q8RXL7 ARL_ARATH ARGOS-like protein DISRUPTION PHENOTYPE: Smaller lateral organs including cotyledons and leaves. {ECO:0000269|PubMed:16824178}. FUNCTION: Promotes cell expansion-dependent organ growth, probably via a brassinosteroids signaling pathway. Acts downstream of BRI1. {ECO:0000269|PubMed:16824178, ECO:0000269|PubMed:21457262}. 15000 ARGOS-like protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular [GO:0005622]; nucleus [GO:0005634]; cell growth [GO:0016049]; multicellular organism development [GO:0007275]; organ growth [GO:0035265]; response to brassinosteroid [GO:0009741] DEVELOPMENTAL STAGE: Present throughout the cotyledons as well as in the mature regions of roots in young seedlings. Expressed in expanding leaves, but not in leaf primordia and juvenile leaves. In flowers, accumulates in sepals and stamen filaments, as well as at the apices and bases of siliques. {ECO:0000269|PubMed:16824178}. TISSUE SPECIFICITY: Expressed in cotyledons, roots, flowers, siliques and leaves. {ECO:0000269|PubMed:16824178}. locus:2051799; AT2G44080 Inherit from euNOG: auxin-regulated gene involved in organ size NA NA NA NA NA NA NA ENOG411EHAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycine rich protein family Os02g0586900 protein (cDNA clone:001-117-H12, full insert sequence),Os02g0586900 protein,Glycine-rich protein (Os02g0587000 protein) (Putative glycine-rich protein) (cDNA clone:001-103-D05, full insert sequence) Q6YY11,Q6YY10,Q6YY09 Q6YY11_ORYSJ,Q6YY10_ORYSJ,Q6YY09_ORYSJ Os02g0586900 OSJNBb0046O12.1-1 OSJNBb0056I22.41-1 OSNPB_020586900,Os02g0586900 OsJ_07308 OSJNBb0046O12.1-2 OSJNBb0056I22.41-2 OSNPB_020586900,Os02g0587000 OsJ_07309 OSJNBb0046O12.2 OSJNBb0056I22.42 OSNPB_020587000 ENOG411EHAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF5 / SMARCB1 / INI1 NA NA NA NA NA NA NA ENOG411EHAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0587700 protein A0A0P0VL20 A0A0P0VL20_ORYSJ Os02g0587700 OSNPB_020587700 ENOG411EHAB PEP5 Q8LD63 PEP5_ARATH Elicitor peptide 5 FUNCTION: Elicitor of plant defense. {ECO:0000250}. 9944 Elicitor peptide 5 innate immune response [GO:0045087] locus:2178223; AT5G09990 NA NA NA NA NA NA NA NA ENOG411EHAC Q3E7F6,Q9LJE1 Q3E7F6_ARATH,Q9LJE1_ARATH Uncharacterized protein 14709,13524 Uncharacterized protein locus:504956163;,locus:2092860; AT1G55365,AT3G13500 NA NA NA NA NA NA NA NA ENOG411EHAG Q5XV41 Q5XV41_ARATH Uncharacterized protein 14743 Uncharacterized protein locus:504954960; AT5G13825 NA NA NA NA NA NA NA NA ENOG411EHA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411EHA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF810) Os05g0281400 protein (Fragment) A0A0P0WKB6 A0A0P0WKB6_ORYSJ Os05g0281400 OSNPB_050281400 ENOG411EHA4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Produces ATP from ADP in the presence of a proton gradient across the membrane (By similarity) NA NA NA NA NA NA NA ENOG411EHA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHA6 AGP1 Q8LCN5 AGP1_ARATH Classical arabinogalactan protein 1 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 12637 Classical arabinogalactan protein 1 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Predominantly expressed in flowers and at a lower level in roots and leaves. {ECO:0000269|PubMed:11006345}. locus:2173388; AT5G64310 arabinogalactan protein 1 NA NA NA NA NA NA NA ENOG411EIU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: L-fucose permease NA NA NA NA NA NA NA ENOG411EIUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUC130/3NT domain NA NA NA NA NA NA NA ENOG411EKKE Q9SUB2 Q9SUB2_ARATH Late embryogenesis abundant protein (LEA) family protein (Uncharacterized protein At4g21020) (Uncharacterized protein T13K14.180) 29422 Late embryogenesis abundant protein (LEA) family protein (Uncharacterized protein At4g21020) (Uncharacterized protein T13K14.180) mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2133144; AT4G21020 late embryogenesis abundant domain-containing protein NA NA NA NA NA NA NA ENOG411DQ38 Q9FX33 Q9FX33_ARATH Uncharacterized protein At1g73380 (Uncharacterized protein T9L24.41) 47341 Uncharacterized protein At1g73380 (Uncharacterized protein T9L24.41) locus:2206860; AT1G73380 Protein of unknown function (DUF1308) Os10g0489800 protein (Fragment) Q0IWT0 Q0IWT0_ORYSJ Os10g0489800 Os10g0489800 OSNPB_100489800 ENOG411EMIQ BRCA1 Q8RXD4 BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog (AtBRCA1) DISRUPTION PHENOTYPE: Enhanced sensitivity to mitomycin C. {ECO:0000269|PubMed:16957774}. FUNCTION: Plays a role in DNA repair and in cell-cycle control. Required for the repair of DNA double-strand breaks (DSBs), both natural and induced by genotoxic stress, by homologous recombination (HR). {ECO:0000269|PubMed:16957774}. R-ATH-5693607;R-ATH-5693616; 103922 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog (AtBRCA1) BRCA1-A complex [GO:0070531]; BRCA1-BARD1 complex [GO:0031436]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; cellular response to gamma radiation [GO:0071480]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; double-strand break repair via homologous recombination [GO:0000724]; negative regulation of fatty acid biosynthetic process [GO:0045717]; negative regulation of histone acetylation [GO:0035067]; positive regulation of cell cycle arrest [GO:0071158]; positive regulation of histone acetylation [GO:0035066]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of cell proliferation [GO:0042127]; response to gamma radiation [GO:0010332] TISSUE SPECIFICITY: Expressed ubiquitously with highest levels in flower buds (PubMed:12582233). Mostly expressed in flowers and siliques, and, to a lower extent, in roots, rosette leaves, inflorescence and young cauline leaves (PubMed:16957774). {ECO:0000269|PubMed:12582233, ECO:0000269|PubMed:16957774}. locus:2133109; AT4G21070 BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411ECST ET1 F4JU69 ET1_ARATH Protein EFFECTOR OF TRANSCRIPTION 1 (AtET1) FUNCTION: Transcriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}. 57003 Protein EFFECTOR OF TRANSCRIPTION 1 (AtET1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in rosette leaves, stipules, stems, flowers, siliques and mature seeds. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269|PubMed:17991462}. locus:2120869; AT4G26170 NA NA NA NA NA NA NA NA ENOG411EIEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3GQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os03g0564600 protein (Fragment) Q0DQS7 Q0DQS7_ORYSJ Os03g0564600 OSNPB_030564600 ENOG411DRND ABCB1 Q9ZR72 AB1B_ARATH ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) dwarf with short inflorescences reduced axillary and secondary inflorescences reduced numbers of rosette and cauline leaves which are smaller and curled,dwarf loss of apical dominance fused cotyledons reduced number of rosette leaves curlier leaves with altered leaf margins Short hypocotyl-H. Wang-2005 FUNCTION: Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in diverse auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). {ECO:0000269|PubMed:10760241, ECO:0000269|PubMed:11701880, ECO:0000269|PubMed:12640467, ECO:0000269|PubMed:14517332, ECO:0000269|PubMed:15908594, ECO:0000269|PubMed:16212599, ECO:0000269|PubMed:9761790}. ARA:AT2G36910-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 140573 ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin influx transmembrane transporter activity [GO:0010328]; anthocyanin accumulation in tissues in response to UV light [GO:0043481]; auxin efflux [GO:0010315]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; photomorphogenesis [GO:0009640]; positive gravitropism [GO:0009958]; regulation of cell size [GO:0008361]; response to auxin [GO:0009733]; response to blue light [GO:0009637]; response to nematode [GO:0009624]; response to red or far red light [GO:0009639]; stamen development [GO:0048443] TISSUE SPECIFICITY: Ubiquitous, with high levels in peduncles. Mostly localized in young developing tissues, including meristems, as well as root and shoot apices. {ECO:0000269|PubMed:1372894, ECO:0000269|PubMed:16212599, ECO:0000269|PubMed:9761790}. locus:2057961; AT2G36910 ABC transporter B family member Os08g0564300 protein (Putative P-glycoprotein 1),Os08g0564300 protein (Fragment) Q7EZL3,Q7EZL2,A0A0P0XJ15,A0A0P0XJY4,A0A0P0XIL8 Q7EZL3_ORYSJ,Q7EZL2_ORYSJ,A0A0P0XJ15_ORYSJ,A0A0P0XJY4_ORYSJ,A0A0P0XIL8_ORYSJ P0705A05.112-1 Os08g0564300 OSNPB_080564300,P0705A05.112-2 Os08g0564300 OSNPB_080564300,Os08g0564300 OSNPB_080564300 ENOG411DRNF F22J12_30,T18D12_60 Q9FG62,Q9FYD1,Q9M241 Q9FG62_ARATH,Q9FYD1_ARATH,Q9M241_ARATH Zinc knuckle (CCHC-type) family protein,Uncharacterized protein At3g43590 (Uncharacterized protein F22J12_30) (Zinc knuckle (CCHC-type) family protein),Uncharacterized protein T18D12_60 (Zinc knuckle (CCHC-type) family protein) 28598,62569,29481 Zinc knuckle (CCHC-type) family protein,Uncharacterized protein At3g43590 (Uncharacterized protein F22J12_30) (Zinc knuckle (CCHC-type) family protein),Uncharacterized protein T18D12_60 (Zinc knuckle (CCHC-type) family protein) nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2183607;,locus:2079859;,locus:2098164; AT5G36240,AT3G43590,AT3G43490 Zinc knuckle Os11g0573200 protein (Zinc knuckle family protein, expressed),Os11g0575200 protein (Fragment) Q2R2A2,A0A0P0Y3R0 Q2R2A2_ORYSJ,A0A0P0Y3R0_ORYSJ Os11g0573200 LOC_Os11g36480 OSNPB_110573200,Os11g0575200 OSNPB_110575200 ENOG411E3GR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: protein ycf72 (ORF137) Uncharacterized protein ycf72 (ORF137) Q36996 YCF72_ORYSJ ycf72-1 LOC_Osp1g00760; ycf72-2 ENOG411E3GJ MBD1 Q5XEN5 MBD1_ARATH Methyl-CpG-binding domain-containing protein 1 (AtMBD1) (MBD01) (Methyl-CpG-binding protein MBD1) FUNCTION: Probable transcriptional regulator. {ECO:0000250}. 23152 Methyl-CpG-binding domain-containing protein 1 (AtMBD1) (MBD01) (Methyl-CpG-binding protein MBD1) nucleus [GO:0005634]; methyl-CpG binding [GO:0008327]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers and buds. {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:15010609}. locus:505006513; AT4G22745 MBD NA NA NA NA NA NA NA ENOG411E3GM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411E3GN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E3GB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os12g0529100 protein) (Os12g0529200 protein),Os12g0527651 protein Q2QPH6,A0A0P0YAV8 Q2QPH6_ORYSJ,A0A0P0YAV8_ORYSJ Os12g0529200 LOC_Os12g34440 Os12g0529100 OSNPB_120529200,Os12g0527651 OSNPB_120527651 ENOG411E3GE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein,Dirigent protein (Fragment) Q53NP4,Q6H838,A0A0P0V4W6 Q53NP4_ORYSJ,Q6H838_ORYSJ,A0A0P0V4W6_ORYSJ Os11g0179400 LOC_Os11g07710 OSNPB_110179400,OJ1267_F10.9 Os02g0211750 OSNPB_020211750,Os01g0601651 OSNPB_010601651 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E3GG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E3G1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0285900 protein A0A0P0WVB8 A0A0P0WVB8_ORYSJ Os06g0285900 OSNPB_060285900 ENOG411E3G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os08g0163600 protein A0A0P0XC42 A0A0P0XC42_ORYSJ Os08g0163600 OSNPB_080163600 ENOG411EF28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 33 (OsMADS33) Q2QW55 MAD33_ORYSJ MADS33 Os12g0206800 LOC_Os12g10520 FUNCTION: Probable transcription factor. ENOG411EF26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Aminotransferase NA NA NA NA NA NA NA ENOG411EBNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:3_5_exonuc NA NA NA NA NA NA NA ENOG411EBNM F3A4.140 Q9SN12 Q9SN12_ARATH AT3g50060/F3A4_140 (MYB transcription factor) (Myb domain protein 77) (R2R3-MYB transcription factor) Abnormal lateral root number in response to IAA -D. Schachtman-2007 FUNCTION: Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. MISCELLANEOUS: Plants overexpressing MYB77 exhibit stunted roots and shoots. {ECO:0000269|PubMed:17675404}. 33111 AT3g50060/F3A4_140 (MYB transcription factor) (Myb domain protein 77) (R2R3-MYB transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; lateral root development [GO:0048527]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to chitin [GO:0010200]; response to ethylene [GO:0009723]; response to salicylic acid [GO:0009751] locus:2083113; AT3G50060 Transcription factor NA NA NA NA NA NA NA ENOG411EBNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EBNA Q4PSL3 Q4PSL3_ARATH Alpha/beta-Hydrolases superfamily protein (Hydrolase) 39464 Alpha/beta-Hydrolases superfamily protein (Hydrolase) hydrolase activity [GO:0016787] locus:2080250; AT3G54240 hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411EBNQ RBL7 O82756 RBL7_ARATH RHOMBOID-like protein 7 (AtRBL7) (EC 3.4.21.-) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in embryo development. {ECO:0000303|PubMed:22007993}. 3.4.21.- 34532 RHOMBOID-like protein 7 (AtRBL7) (EC 3.4.21.-) integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2127258; AT4G23070 Rhomboid family NA NA NA NA NA NA NA ENOG411EBN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF544) Os06g0721600 protein,Os06g0718800 protein,Os06g0723400 protein A0A0P0X107,A0A0N7KMR2,A0A0P0X120 A0A0P0X107_ORYSJ,A0A0N7KMR2_ORYSJ,A0A0P0X120_ORYSJ Os06g0721600 OSNPB_060721600,Os06g0718800 OSNPB_060718800,Os06g0723400 OSNPB_060723400 ENOG411EBN8 LECRK92 Q9LSL5 LRK92_ARATH L-type lectin-domain containing receptor kinase IX.2 (LecRK-IX.2) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici associated with reduced expression of some defense genes (e.g. PR1, PDF1.2, CYP71B15 and CYP81F2). However, normal defense responses to the fungal pathogen Alternaria brassicicola and to the bacterial pathogen Pseudomonas syringae (PubMed:25083911, PubMed:26011556). Susceptibility to P. brassicae and P. capsici is enhanced in plants impaired in LECRK91 and LECRK92 (PubMed:26011556). {ECO:0000269|PubMed:25083911, ECO:0000269|PubMed:26011556}. FUNCTION: Promotes hydrogen peroxide H(2)O(2) production and cell death. {ECO:0000269|PubMed:26011556}.; FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:25083911, ECO:0000269|PubMed:26011556, ECO:0000269|PubMed:26795144}. MISCELLANEOUS: Both lectin domain and kinase activity are required for resistance to oomycetes, but only the lectin domain is required to trigger cell death. {ECO:0000269|PubMed:26011556}. 2.7.11.1 75295 L-type lectin-domain containing receptor kinase IX.2 (LecRK-IX.2) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to oomycetes [GO:0002229]; positive regulation of cell death [GO:0010942]; positive regulation of hydrogen peroxide metabolic process [GO:0010726] locus:2155685; AT5G65600 Legume lectin domain NA NA NA NA NA NA NA ENOG411EBN7 Q9LS86,A0A1I9LTB6 DRIPH_ARATH,A0A1I9LTB6_ARATH Probable E3 ubiquitin protein ligase DRIPH (EC 2.3.2.27) (DREB2A-interacting protein homolog) (RING-type E3 ubiquitin transferase DRIPH),RING/U-box superfamily protein PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 53664,53240 Probable E3 ubiquitin protein ligase DRIPH (EC 2.3.2.27) (DREB2A-interacting protein homolog) (RING-type E3 ubiquitin transferase DRIPH),RING/U-box superfamily protein metal ion binding [GO:0046872]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567] locus:2094608; AT3G23060 Inherit from KOG: Polycomb group ring finger NA NA NA NA NA NA NA ENOG411EBN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zeta toxin NA NA NA NA NA NA NA ENOG411EBN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-phosphate dependent enzyme NA NA NA NA NA NA NA ENOG411EBN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:YDG_SRA NA NA NA NA NA NA NA ENOG411EBN3 Q9C9D4 Q9C9D4_ARATH At1g72350 (MADS-box protein) (MADS-box protein AGL60) (MADS-box transcription factor family protein) (Putative SRF-type transcription factor; 73282-73956) 25513 At1g72350 (MADS-box protein) (MADS-box protein AGL60) (MADS-box transcription factor family protein) (Putative SRF-type transcription factor; 73282-73956) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2193922; AT1G72350 MADS-box protein NA NA NA NA NA NA NA ENOG411EBN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF227 NA NA NA NA NA NA NA ENOG411EBN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60Kd inner membrane protein NA NA NA NA NA NA NA ENOG411EBN0 AGL72 Q9FLH5 AGL72_ARATH MADS-box protein AGL72 (Protein AGAMOUS-LIKE 72) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21609362}. FUNCTION: MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. 24634 MADS-box protein AGL72 (Protein AGAMOUS-LIKE 72) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of flower development [GO:0009909]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. locus:2165386; AT5G51860 MADS-box protein NA NA NA NA NA NA NA ENOG411EF22 MDA7.10 F4K6C1,F4KIL7 F4K6C1_ARATH,F4KIL7_ARATH ATP-binding protein, putative (DUF2431),ATP-binding protein (DUF2431) 19958,21852 ATP-binding protein, putative (DUF2431),ATP-binding protein (DUF2431) ATP binding [GO:0005524],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; rRNA (uridine-N3-)-methyltransferase activity [GO:0070042]; rRNA base methylation [GO:0070475] locus:2161745;,locus:2179265; AT5G56060,AT5G25030 Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411EF21 SPH12 Q680N1 SPH12_ARATH S-protein homolog 12 18688 S-protein homolog 12 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:2180562; AT5G26060 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411E81X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E81Y Q9LFC2 Q9LFC2_ARATH Uncharacterized protein F7J8_120 53511 Uncharacterized protein F7J8_120 locus:2150064; AT5G01140 Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411E81Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0182300 protein Q6H802 Q6H802_ORYSJ OJ1297_C09.29 Os02g0182300 OSNPB_020182300 ENOG411E81R MIJ24.2 Q9LTF6,Q4PT00,Q9LMB0,Q9FHP3,P0C2G5,Q9SV63,F4KEG7 FB291_ARATH,FB46_ARATH,FB10_ARATH,FB300_ARATH,FB45_ARATH,Q9SV63_ARATH,F4KEG7_ARATH Putative F-box protein At5g52610,F-box protein At1g47810,Putative F-box protein At1g19160,F-box protein At5g65850,Putative F-box protein At1g47800,F-box associated ubiquitination effector family protein (Uncharacterized protein AT4g13060),F-box associated ubiquitination effector family protein 40327,40111,40402,45437,44144,39037,22417 Putative F-box protein At5g52610,F-box protein At1g47810,Putative F-box protein At1g19160,F-box protein At5g65850,Putative F-box protein At1g47800,F-box associated ubiquitination effector family protein (Uncharacterized protein AT4g13060),F-box associated ubiquitination effector family protein integral component of membrane [GO:0016021] locus:2149634;,locus:2202435;,locus:2202160;,locus:2152064;,locus:2202385;,locus:2123266;,locus:2164825; AT5G52610,AT1G47810,AT1G19160,AT5G65850,AT1G47800,AT4G13060,AT5G39540 F-Box protein NA NA NA NA NA NA NA ENOG411E81S Q9FGU5 Q9FGU5_ARATH Emb|CAB82975.1 (Uncharacterized protein At5g59080) 14689 Emb|CAB82975.1 (Uncharacterized protein At5g59080) response to oxidative stress [GO:0006979] locus:2153286; AT5G59080 NA NA NA NA NA NA NA NA ENOG411E81T TOM5 Q9SD80 TOM5_ARATH Mitochondrial import receptor subunit TOM5 homolog (Translocase of outer membrane 5 kDa subunit homolog) FUNCTION: A component of the complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. {ECO:0000305}. 6091 Mitochondrial import receptor subunit TOM5 homolog (Translocase of outer membrane 5 kDa subunit homolog) integral component of membrane [GO:0016021]; mitochondrial outer membrane translocase complex [GO:0005742]; mitochondrion [GO:0005739]; plastid [GO:0009536]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2142838; AT5G08040 mitochondrial import receptor subunit tom5 homolog Os12g0575200 protein (cDNA clone:001-021-F10, full insert sequence),Os03g0603500 protein Q2QN85,A0A0P0W0M6 Q2QN85_ORYSJ,A0A0P0W0M6_ORYSJ Os12g0575200 LOC_Os12g38650 OsJ_36616 OSNPB_120575200,Os03g0603500 OSNPB_030603500 ENOG411E81U Q5Q0C5,F4J4I8 Q5Q0C5_ARATH,F4J4I8_ARATH Uncharacterized protein 28965,27872 Uncharacterized protein locus:2074333; AT3G51760 Protein of unknown function (DUF688) NA NA NA NA NA NA NA ENOG411E81V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os01g0691300 protein (cDNA, clone: J075112P14, full insert sequence),Os01g0691100 protein (Fragment) Q0JK80,A0A0P0V6U6 Q0JK80_ORYSJ,A0A0P0V6U6_ORYSJ Os01g0691300 Os01g0691300 OsJ_03083 OSNPB_010691300,Os01g0691100 OSNPB_010691100 ENOG411E81W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine proteinase inhibitor Q10R40,Q10R41 Q10R40_ORYSJ,Q10R41_ORYSJ Os03g0172400 LOC_Os03g07620 Os03g0172400 OsJ_09598 OSNPB_030172400,Os03g0172300 LOC_Os03g07610 OsJ_09597 OSNPB_030172300 ENOG411E81H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0148600 protein,Os02g0736000 protein B9ESV7,A0A0P0VPF2 B9ESV7_ORYSJ,A0A0P0VPF2_ORYSJ Os01g0148600 OsJ_00373 OSNPB_010148600,Os02g0736000 OSNPB_020736000 ENOG411E81I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0554900 protein A0A0N7KJH3 A0A0N7KJH3_ORYSJ Os04g0554900 OSNPB_040554900 ENOG411E81J SAUR56 Q9SGR4 Q9SGR4_ARATH SAUR-like auxin-responsive protein family (T23E18.13) 13992 SAUR-like auxin-responsive protein family (T23E18.13) response to auxin [GO:0009733] locus:2199819; AT1G76190 auxin-responsive NA NA NA NA NA NA NA ENOG411E81K Q84JS8 Q84JS8_ARATH Uncharacterized protein At2g38790 22541 Uncharacterized protein At2g38790 locus:2040374; AT2G38790 NA NA NA NA NA NA NA NA ENOG411E81M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pre-RNA processing PIH1/Nop17 NA NA NA NA NA NA NA ENOG411E81A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os06g0494701 protein,Os06g0720000 protein (Fragment) A0A0P0WWV6,A0A0P0X179 A0A0P0WWV6_ORYSJ,A0A0P0X179_ORYSJ Os06g0494701 OSNPB_060494701,Os06g0720000 OSNPB_060720000 ENOG411E81B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) Os01g0306200 protein (cDNA clone:J023094M01, full insert sequence) Q656E8 Q656E8_ORYSJ Os01g0306200 OSJNBb0022N24.1 OSNPB_010306200 P0552C05.28 ENOG411E81C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0201000 protein,Os06g0201800 protein,Os06g0201500 protein,Os06g0201200 protein (cDNA clone:002-155-G10, full insert sequence),Os06g0202100 protein,Os06g0201300 protein Q69K44,Q69SS2,Q69VV5,Q69K42,Q69SR8,Q69K41 Q69K44_ORYSJ,Q69SS2_ORYSJ,Q69VV5_ORYSJ,Q69K42_ORYSJ,Q69SR8_ORYSJ,Q69K41_ORYSJ Os06g0201000 Os06g0201000 B1172G12.43 OJ1147_D11.21 OSNPB_060201000,Os06g0201800 OJ1147_D11.32 OsJ_20485 OSJNBa0016O19.3 OSNPB_060201800,Os06g0201500 OJ1147_D11.29 OsJ_20484 OSNPB_060201500,Os06g0201200 Os06g0201200 B1172G12.45 OJ1147_D11.23 OsJ_20489 OSNPB_060201200,Os06g0202100 Os06g0202100 OJ1147_D11.38 OSJNBa0016O19.9 OSNPB_060202100,Os06g0201300 B1172G12.47 OJ1147_D11.25 OsJ_20490 OSNPB_060201300 ENOG411E81E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E81F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MEKHLA domain NA NA NA NA NA NA NA ENOG411E81G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E818 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0349800 protein (cDNA clone:001-103-B10, full insert sequence) Q5Z5H5 Q5Z5H5_ORYSJ Os06g0349800 Os06g0349800 OSJNBa0031J07.41 OSNPB_060349800 ENOG411E819 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os10g0412350 protein (Os10g0557133 protein),Os08g0421600 protein,Os08g0284200 protein,Os11g0201175 protein,Os12g0562166 protein,Os07g0152500 protein,Os07g0257600 protein (Fragment),Os06g0198100 protein,Os12g0621832 protein,Os12g0190875 protein,Os07g0220466 protein,Os07g0486300 protein,Os01g0740150 protein,Os06g0323550 protein,Os05g0377450 protein,Os08g0543275 protein,Os02g0260900 protein,Os04g0247700 protein,Os04g0436700 protein,Os01g0114000 protein,Os02g0255400 protein,Os08g0283000 protein,Os06g0132000 protein,Os08g0283600 protein,Os08g0504200 protein,Os03g0199800 protein,Os09g0113500 protein,Os08g0437566 protein,Os08g0283300 protein (Fragment),Os08g0284500 protein,Os04g0375750 protein,Os12g0484375 protein,Os05g0391300 protein,Os01g0196133 protein,Os08g0172566 protein,Os01g0308700 protein,Os07g0257800 protein,Os12g0598600 protein,Os08g0283900 protein,Os11g0307400 protein,Os10g0332733 protein,Os12g0611500 protein,Os11g0272675 protein A0A0P0XX47,A0A0P0XGB8,A0A0P0XE90,A0A0P0XZW4,A0A0P0YBA5,A0A0P0X2C0,A0A0P0X4B1,A0A0P0WTK4,A0A0N7KUD9,A0A0P0Y7T2,A0A0N7KN52,A0A0P0X659,A0A0N7KDQ4,A0A0N7KM10,A0A0P0WLN8,A0A0P0XIA8,A0A0P0VHA5,A0A0P0W7U5,A0A0P0WAM0,A0A0P0UXH0,A0A0P0VH82,A0A0P0XE51,A0A0P0WRY0,A0A0P0XEJ1,A0A0P0XHP4,A0A0P0VUD2,A0A0P0XK22,A0A0P0XG69,A0A0P0XEH2,A0A0P0XE23,A0A0P0W946,A0A0P0YAB0,A0A0P0WM54,A0A0P0UZR7,A0A0P0XCC0,A0A0P0V1M5,A0A0P0X4T6,A0A0P0YCH3,A0A0P0XET9,A0A0P0Y1G9,A0A0P0XSU5,A0A0P0YC41,A0A0P0Y111 A0A0P0XX47_ORYSJ,A0A0P0XGB8_ORYSJ,A0A0P0XE90_ORYSJ,A0A0P0XZW4_ORYSJ,A0A0P0YBA5_ORYSJ,A0A0P0X2C0_ORYSJ,A0A0P0X4B1_ORYSJ,A0A0P0WTK4_ORYSJ,A0A0N7KUD9_ORYSJ,A0A0P0Y7T2_ORYSJ,A0A0N7KN52_ORYSJ,A0A0P0X659_ORYSJ,A0A0N7KDQ4_ORYSJ,A0A0N7KM10_ORYSJ,A0A0P0WLN8_ORYSJ,A0A0P0XIA8_ORYSJ,A0A0P0VHA5_ORYSJ,A0A0P0W7U5_ORYSJ,A0A0P0WAM0_ORYSJ,A0A0P0UXH0_ORYSJ,A0A0P0VH82_ORYSJ,A0A0P0XE51_ORYSJ,A0A0P0WRY0_ORYSJ,A0A0P0XEJ1_ORYSJ,A0A0P0XHP4_ORYSJ,A0A0P0VUD2_ORYSJ,A0A0P0XK22_ORYSJ,A0A0P0XG69_ORYSJ,A0A0P0XEH2_ORYSJ,A0A0P0XE23_ORYSJ,A0A0P0W946_ORYSJ,A0A0P0YAB0_ORYSJ,A0A0P0WM54_ORYSJ,A0A0P0UZR7_ORYSJ,A0A0P0XCC0_ORYSJ,A0A0P0V1M5_ORYSJ,A0A0P0X4T6_ORYSJ,A0A0P0YCH3_ORYSJ,A0A0P0XET9_ORYSJ,A0A0P0Y1G9_ORYSJ,A0A0P0XSU5_ORYSJ,A0A0P0YC41_ORYSJ,A0A0P0Y111_ORYSJ Os10g0557133 Os10g0412350 OSNPB_100412350 OSNPB_100557133,Os08g0421600 OSNPB_080421600,Os08g0284200 OSNPB_080284200,Os11g0201175 OSNPB_110201175,Os12g0562166 OSNPB_120562166,Os07g0152500 OSNPB_070152500,Os07g0257600 OSNPB_070257600,Os06g0198100 OSNPB_060198100,Os12g0621832 OSNPB_120621832,Os12g0190875 OSNPB_120190875,Os07g0220466 OSNPB_070220466,Os07g0486300 OSNPB_070486300,Os01g0740150 OSNPB_010740150,Os06g0323550 OSNPB_060323550,Os05g0377450 OSNPB_050377450,Os08g0543275 OSNPB_080543275,Os02g0260900 OSNPB_020260900,Os04g0247700 OSNPB_040247700,Os04g0436700 OSNPB_040436700,Os01g0114000 OSNPB_010114000,Os02g0255400 OSNPB_020255400,Os08g0283000 OSNPB_080283000,Os06g0132000 OSNPB_060132000,Os08g0283600 OSNPB_080283600,Os08g0504200 OSNPB_080504200,Os03g0199800 OSNPB_030199800,Os09g0113500 OSNPB_090113500,Os08g0437566 OSNPB_080437566,Os08g0283300 OSNPB_080283300,Os08g0284500 OSNPB_080284500,Os04g0375750 OSNPB_040375750,Os12g0484375 OSNPB_120484375,Os05g0391300 OSNPB_050391300,Os01g0196133 OSNPB_010196133,Os08g0172566 OSNPB_080172566,Os01g0308700 OSNPB_010308700,Os07g0257800 OSNPB_070257800,Os12g0598600 OSNPB_120598600,Os08g0283900 OSNPB_080283900,Os11g0307400 OSNPB_110307400,Os10g0332733 OSNPB_100332733,Os12g0611500 OSNPB_120611500,Os11g0272675 OSNPB_110272675 ENOG411E810 F4HWW7 F4HWW7_ARATH HSP20-like chaperones superfamily protein 20364 HSP20-like chaperones superfamily protein integral component of membrane [GO:0016021] locus:2020033; AT1G54400 Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411E811 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E812 Q1G3V1 Q1G3V1_ARATH Transmembrane protein 11961 Transmembrane protein integral component of membrane [GO:0016021] locus:1009023142; AT1G12064 NA NA NA NA NA NA NA NA ENOG411E813 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0444440 protein B9G163 B9G163_ORYSJ Os08g0444440 OsJ_27498 OSNPB_080444440 ENOG411E814 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411E815 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E816 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E817 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0320900 protein (Fragment) A0A0P0XEJ4 A0A0P0XEJ4_ORYSJ Os08g0320900 OSNPB_080320900 ENOG411E05K SUVH6,SUVH5 Q8VZ17,O82175,A0A1P8AZY9 SUVH6_ARATH,SUVH5_ARATH,A0A1P8AZY9_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 6) (H3-K9-HMTase 6) (Protein SET DOMAIN GROUP 23) (Suppressor of variegation 3-9 homolog protein 6) (Su(var)3-9 homolog protein 6),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 5) (H3-K9-HMTase 5) (Protein SET DOMAIN GROUP 9) (Suppressor of variegation 3-9 homolog protein 5) (Su(var)3-9 homolog protein 5),SU(VAR)3-9 homolog 5 The suvh5 single mutant has no obvious morphological defects or changes in histone or DNA methylation patterning due to redundancy with suvh4 and suvh6. The suvh4 suvh5 suvh6 triple mutant has no obvious morphological defects but displays loss of DNA methylation in non-CG sequence contexts similar to a cmt3 null mutant and loss of both mono- and di-methylation of H3 K9 at heterochromatic sequences. FUNCTION: Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Seems to act preferentially on dsMRNA. {ECO:0000269|PubMed:15014946, ECO:0000269|PubMed:16287862}.,FUNCTION: Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. ARA:AT2G22740-MONOMER;ARA:GQT-1934-MONOMER; R-ATH-3214841; 2.1.1.43 87477,88153,84520 Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 6) (H3-K9-HMTase 6) (Protein SET DOMAIN GROUP 23) (Suppressor of variegation 3-9 homolog protein 6) (Su(var)3-9 homolog protein 6),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 5) (H3-K9-HMTase 5) (Protein SET DOMAIN GROUP 9) (Suppressor of variegation 3-9 homolog protein 5) (Su(var)3-9 homolog protein 5),SU(VAR)3-9 homolog 5 chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; histone binding [GO:0042393]; histone-lysine N-methyltransferase activity [GO:0018024]; methyl-CpG binding [GO:0008327]; methyl-CpNpG binding [GO:0010428]; methyl-CpNpN binding [GO:0010429]; methyltransferase activity [GO:0008168]; zinc ion binding [GO:0008270]; histone methylation [GO:0016571],chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; histone binding [GO:0042393]; histone methyltransferase activity [GO:0042054]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; chromatin silencing by small RNA [GO:0031048]; histone methylation [GO:0016571]; regulation of gene expression, epigenetic [GO:0040029]; response to chitin [GO:0010200],chromosome [GO:0005694]; nucleus [GO:0005634]; histone binding [GO:0042393]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in leaves stems and flowers. {ECO:0000269|PubMed:11691919}. locus:2065988;,locus:2063384; AT2G22740,AT2G35160 Histone-lysine N-methyltransferase H3 lysine-9 Os09g0362900 protein (Putative SET domain-containing protein SET104) Q6K4E6 Q6K4E6_ORYSJ Os09g0362900 OJ1506_A04.14 OSNPB_090362900 ENOG411EGE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0793600 protein B9ETP8 B9ETP8_ORYSJ Os01g0793600 OsJ_03736 OSNPB_010793600 ENOG411EGE8 Q1G3N1 Q1G3N1_ARATH RING/U-box superfamily protein 16015 RING/U-box superfamily protein integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:1009023242; AT3G60966 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EGE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD-specific glutamate dehydrogenase Os03g0276850 protein (Fragment),Os06g0483150 protein A0A0N7KH11,A0A0N7KM47 A0A0N7KH11_ORYSJ,A0A0N7KM47_ORYSJ Os03g0276850 OSNPB_030276850,Os06g0483150 OSNPB_060483150 ENOG411EGE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40S ribosomal protein S12 40S ribosomal protein S12 Q7EY39 Q7EY39_ORYSJ OSJNBa0016A21.128-1 Os07g0229900 OSNPB_070229900 ENOG411EGE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:NC NA NA NA NA NA NA NA ENOG411EGE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EGE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EGEY MMN10.25,MRN17.20 Q9FJD7,Q9FFB1,A0A1P8BEI6,F4KBE2 Q9FJD7_ARATH,Q9FFB1_ARATH,A0A1P8BEI6_ARATH,F4KBE2_ARATH Transmembrane protein,At5g22970,Uncharacterized protein 17181,15354,16340,13133 Transmembrane protein,At5g22970,Uncharacterized protein integral component of membrane [GO:0016021] locus:2168098;,locus:2172706; AT5G60000,AT5G22970 NA NA NA NA NA NA NA NA ENOG411EGEX Q9LQS7 Q9LQS7_ARATH T4O12.11 19040 T4O12.11 locus:2204405; AT1G75870 NA NA NA NA NA NA NA NA ENOG411EGES MUG13.2 Q9FF62 Q9FF62_ARATH C2H2 and C2HC zinc fingers superfamily protein (Uncharacterized protein At5g05120) 22450 C2H2 and C2HC zinc fingers superfamily protein (Uncharacterized protein At5g05120) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2175309; AT5G05120 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EGER SPR1 Q9SJW3 SPR1_ARATH Protein SPIRAL1 (Protein NAP16kDa) DISRUPTION PHENOTYPE: Isotropic expansion of endodermal and cortical cells in root, etiolated hypocotyl, and dark-grown influorescent stem, and induce right-handed spiral in epidermal cell files of these organs. {ECO:0000269|PubMed:11003843, ECO:0000269|PubMed:15155883}. Defective in directional cell elongation processes; abnormal cortical microtubule function; exhibits right-handed helical growth in roots and etiolated hypocotyls; epidermal cell files of roots are twisted to form right-handed helices; on vertically oriented hard agar plates roots grow to the right when viewed from above the agar plates; this skewed root growth is driven by the friction between agar surface and helical epidermal cell files; phenotype is enhanced under the conditions that accelerate cell elongation under such conditions epidermal cells undergo isotropic cell expansion resulting in spherically shaped cells protruding from the organ surface.,Phenotype not described.,Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion. Roots etiolated hypocotyls and leaf petioles exhibit right-handed axial twisting and root growth on inclined agar media is strongly right skewed. Cortical microtubules reoriented. The touch-dependent helical growth of roots is suppressed by the antimicrotubule drugs propyzamide and oryzalin and right skewing is exacerbated by cold treatment. Helical root growth; Helical shoot growth defects in the dark-T. Hashimoto-2002 FUNCTION: Required for directional control of cell elongation. Stabilizes growing ends of cortical microtubules and influences their dynamic properties. Acts redundantly with SP1Ls in maintaining the cortical microtubules organization essential for anisotropic cell growth. Plays a key role in salt stress-induced microtubules disassembly. {ECO:0000269|PubMed:11003843, ECO:0000269|PubMed:15084720, ECO:0000269|PubMed:15155883, ECO:0000269|PubMed:16478750, ECO:0000269|PubMed:21954463}. 11920 Protein SPIRAL1 (Protein NAP16kDa) cortical microtubule, transverse to long axis [GO:0010005]; phragmoplast [GO:0009524]; preprophase band [GO:0009574]; spindle microtubule [GO:0005876]; anisotropic cell growth [GO:0051211]; cellular response to salt stress [GO:0071472]; cortical microtubule organization [GO:0043622]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Ubiquitous. High expression was associated with tissues undergoing rapid cell expansion, including the root elongation zone, hypocotyls of dark grown-seedlings, and cotyledons of light-grown seedlings. {ECO:0000269|PubMed:15084720, ECO:0000269|PubMed:15155883, ECO:0000269|PubMed:16478750}. locus:2044224; AT2G03680 NA NA NA NA NA NA NA NA ENOG411EGEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0168250 protein A0A0N7KSH6 A0A0N7KSH6_ORYSJ Os11g0168250 OSNPB_110168250 ENOG411EGEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain Os02g0275401 protein,Os07g0583500 protein,Os07g0583432 protein,Os02g0474100 protein A0A0P0VHG0,A0A0P0X887,A0A0P0X818,A0A0P0VIX2 A0A0P0VHG0_ORYSJ,A0A0P0X887_ORYSJ,A0A0P0X818_ORYSJ,A0A0P0VIX2_ORYSJ Os02g0275401 OSNPB_020275401,Os07g0583500 OSNPB_070583500,Os07g0583432 OSNPB_070583432,Os02g0474100 OSNPB_020474100 ENOG411EGEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EGEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox associated leucine zipper NA NA NA NA NA NA NA ENOG411EGEU HMGB3 P93047,A0A1P8ATG5 HMGB3_ARATH,A0A1P8ATG5_ARATH High mobility group B protein 3 (High mobility group protein B 2) (AtHMGbeta2) (HMG beta 2) (Nucleosome/chromatin assembly factor group D 03) (Nucleosome/chromatin assembly factor group D 3),High mobility group B3 FUNCTION: Binds preferentially double-stranded DNA. {ECO:0000269|PubMed:9461286}. 15681,14897 High mobility group B protein 3 (High mobility group protein B 2) (AtHMGbeta2) (HMG beta 2) (Nucleosome/chromatin assembly factor group D 03) (Nucleosome/chromatin assembly factor group D 3),High mobility group B3 chromatin [GO:0000785]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; structural constituent of chromatin [GO:0030527]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin assembly or disassembly [GO:0006333],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in lateral roots, root tips, stems, cotyledons, leaves and flowers (excluding ovary and pedicels). {ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:17316617, ECO:0000269|PubMed:9461286}. locus:505006136; AT1G20696 HMG (high mobility group) box NA NA NA NA NA NA NA ENOG411EGET PRE2 Q9LXG5 PRE2_ARATH Transcription factor PRE2 (Basic helix-loop-helix protein 134) (AtbHLH134) (bHLH 134) (Protein BANQUO 2) (Protein PACLOBUTRAZOL RESISTANCE 2) (Transcription factor EN 52) (bHLH transcription factor bHLH134) Same as bnq3 single mutants: sepals and carpels are pale yellow or whitewhile the inflorescence stems and siliques are purple,WT phenotype FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}. MISCELLANEOUS: Plants over-expressing PRE2 show long hypocotyls, pale green and slightly narrow leaves, elongated petioles and early flowering. They are not sensitive to the gibberellin inhibitor paclobutrazol during seed germination (PubMed:16527868). {ECO:0000305|PubMed:16527868}. 10546 Transcription factor PRE2 (Basic helix-loop-helix protein 134) (AtbHLH134) (bHLH 134) (Protein BANQUO 2) (Protein PACLOBUTRAZOL RESISTANCE 2) (Transcription factor EN 52) (bHLH transcription factor bHLH134) nucleus [GO:0005634]; vacuole [GO:0005773]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; gibberellic acid mediated signaling pathway [GO:0009740]; photomorphogenesis [GO:0009640]; regulation of growth [GO:0040008]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}. locus:2150916; AT5G15160 BHLH family NA NA NA NA NA NA NA ENOG411EGEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EGEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0168400 protein (cDNA, clone: J065179A07, full insert sequence) B7F8V8 B7F8V8_ORYSJ Os04g0168400 Os04g0168400 OsJ_13795 OSNPB_040168400 ENOG411EGEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os07g0227600 protein Q0D7P2 Q0D7P2_ORYSJ Os07g0227600 Os07g0227600 OSNPB_070227600 ENOG411EGEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EGEA Q8GW87,A0A1P8B1X0,A8MQW8,F4IG36 Q8GW87_ARATH,A0A1P8B1X0_ARATH,A8MQW8_ARATH,F4IG36_ARATH Nucleolar histone methyltransferase-related protein (Uncharacterized protein At2g40020),Nucleolar histone methyltransferase-related protein 26602,28550,27924,21020 Nucleolar histone methyltransferase-related protein (Uncharacterized protein At2g40020),Nucleolar histone methyltransferase-related protein histone-lysine N-methyltransferase activity [GO:0018024] locus:2061141; AT2G40020 Ubiquitin-binding WIYLD domain NA NA NA NA NA NA NA ENOG411EGEG MIF1 Q9CA51,A0A1P8AWK2 MIF1_ARATH,A0A1P8AWK2_ARATH Mini zinc finger protein 1 (AtMIF1),Mini zinc finger 1 Constitutive overexpression of MIF1 caused dramatic developmental defects including dwarfism reduced apical dominance extreme longevity dark-green leaves altered flower morphology poor fertility reduced hypocotyl length spoon-like cotyledons reduced root growth and ectopic root hairs on hypocotyls and cotyledons. In addition 35S::MIF1 seedlings underwent constitutive photomorphogenesis in the dark with root growth similar to that in the light. Furthermore 35S::MIF1 seedlings were demonstrated to be non-responsive to gibberellin (GA) for cell elongation hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA) and hyposensitive to auxin brassinosteroid and cytokinin but normally responsive to ethylene. The de-etiolation defect could not be rescued by the hormones tested. FUNCTION: Inhibits zinc finger homeodomain (ZHD) transcription factors, such as ZHD5, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by preventing the expression of genes involved in gibberellic acid (GA), auxin and brassinosteroid signaling and by promoting the expression of abscisic acid (ABA)-responsive genes. Regulates several development aspects, including photomorphogenesis, apical dominance, longevity, flower morphology and fertility, as well as root and stem elongation. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21455630}. 11213,10642 Mini zinc finger protein 1 (AtMIF1),Mini zinc finger 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; multicellular organism development [GO:0007275]; negative regulation of DNA binding [GO:0043392]; negative regulation of transcription, DNA-templated [GO:0045892]; photomorphogenesis [GO:0009640]; regulation of meristem development [GO:0048509]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to cytokinin [GO:0009735]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in roots and stems, present in siliques and seedlings, and weakly observed in petioles, leaves and flowers. {ECO:0000269|PubMed:16412086}. locus:2019190; AT1G74660 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411EGEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCT NA NA NA NA NA NA NA ENOG411EGEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os06g0475800 protein,Os06g0475650 protein,Os06g0362100 protein (Fragment),Os11g0272900 protein (Fragment),Os06g0362000 protein,Os06g0494550 protein,Os10g0156701 protein,Os12g0287500 protein,Os11g0123023 protein Q69Y32,A0A0P0WWK5,A0A0P0WWI3,A0A0N7KSR7,A0A0P0WWU3,A0A0P0WWY0,A0A0P0XSM8,A0A0P0Y934,A0A0P0XYT3 Q69Y32_ORYSJ,A0A0P0WWK5_ORYSJ,A0A0P0WWI3_ORYSJ,A0A0N7KSR7_ORYSJ,A0A0P0WWU3_ORYSJ,A0A0P0WWY0_ORYSJ,A0A0P0XSM8_ORYSJ,A0A0P0Y934_ORYSJ,A0A0P0XYT3_ORYSJ Os06g0475800 OsJ_21355 OSNPB_060475800 P0021H10.25,Os06g0475650 OSNPB_060475650,Os06g0362100 OSNPB_060362100,Os11g0272900 OSNPB_110272900,Os06g0362000 OSNPB_060362000,Os06g0494550 OSNPB_060494550,Os10g0156701 OSNPB_100156701,Os12g0287500 OSNPB_120287500,Os11g0123023 OSNPB_110123023 ENOG411EMD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily Os02g0667500 protein (Fragment) A0A0P0VMP4,A0A0N7KFU6 A0A0P0VMP4_ORYSJ,A0A0N7KFU6_ORYSJ Os02g0667500 OSNPB_020667500 ENOG411EF2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DJ-1/PfpI family NA NA NA NA NA NA NA ENOG411EF2S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Inner centromere protein ARK binding region NA NA NA NA NA NA NA ENOG411EF2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTAR SGR2,SGR1 Q66WT5,O82741,B3H593,A0A1P8B3H1 SGR2_ARATH,SGR1_ARATH,B3H593_ARATH,A0A1P8B3H1_ARATH Protein STAY-GREEN 2, chloroplastic (Protein NON-YELLOWING 2) (Protein STAYGREEN 2),Protein STAY-GREEN 1, chloroplastic (Protein NON-YELLOWING 1) (Protein STAYGREEN 1),STAY-GREEN-like protein DISRUPTION PHENOTYPE: No effect on seed degreening; probably due to redundancy with SGR1. Sgr1 and sgr2 double mutant has an embryo stay-green phenotype. {ECO:0000269|PubMed:18301989, ECO:0000269|PubMed:24043799}.,DISRUPTION PHENOTYPE: RNAi-mediated knockout of the protein results in a stay-green leaf phenotype. No effect on seed degreening; probably due to redundancy with SGR1. Sgr1 and sgr2 double mutant has an embryo stay-green phenotype. {ECO:0000269|PubMed:17204643}. FUNCTION: Involved in the disassembling mechanism of the intact light-harvesting complex of photosystem II (LHCPII) in the thylakoid membranes. Mediates chlorophyll degradation during embryo degreening, and during natural and dark-induced leaf senescence. Regulated at the transcriptional level by ABI3. {ECO:0000269|PubMed:17513504, ECO:0000269|PubMed:24043799}.,FUNCTION: Involved in the disassembling mechanism of the intact light-harvesting complex of photosystem II (LHCII) in the thylakoid membranes. Required to trigger chlorophyll degradation during natural and dark-induced leaf senescence. Regulated at the transcriptional level by ABI3. {ECO:0000269|PubMed:17513504, ECO:0000269|PubMed:24043799}. 30753,30052,31139,26713 Protein STAY-GREEN 2, chloroplastic (Protein NON-YELLOWING 2) (Protein STAYGREEN 2),Protein STAY-GREEN 1, chloroplastic (Protein NON-YELLOWING 1) (Protein STAYGREEN 1),STAY-GREEN-like protein chloroplast [GO:0009507]; plastid thylakoid membrane [GO:0055035]; negative regulation of chlorophyll catabolic process [GO:1903647],chloroplast thylakoid membrane [GO:0009535]; chlorophyll catabolic process [GO:0015996] DEVELOPMENTAL STAGE: Constitutively expressed at low level during leaf development, but up-regulated during seed maturation and senescence, when the leaf color changes from green to yellow. {ECO:0000269|PubMed:17513504, ECO:0000269|PubMed:24043799}.,DEVELOPMENTAL STAGE: Constitutively expressed at low level during leaf development, but up-regulated during seed maturation and senescence, when the leaf color changes from green to yellow. {ECO:0000269|PubMed:17204643, ECO:0000269|PubMed:17468209, ECO:0000269|PubMed:17513504, ECO:0000269|PubMed:23200839, ECO:0000269|PubMed:24043799, ECO:0000269|Ref.8}. TISSUE SPECIFICITY: Expressed in roots, leaves, seeds, flowers, buds, petals, sepals and siliques. {ECO:0000269|PubMed:17204643, ECO:0000269|PubMed:17468209, ECO:0000269|Ref.8}. locus:2137020;,locus:2127153;,locus:4515103377; AT4G11910,AT4G22920,AT4G11911 Senescence-inducible chloroplast stay-green protein Protein STAY-GREEN, chloroplastic (Protein STAYGREEN) Q652K1 SGR_ORYSJ SGR Os09g0532000 LOC_Os09g36200 OJ1254_E07.23 P0515E01.8 DISRUPTION PHENOTYPE: Stay-green phenotype during dark-induced senescence. {ECO:0000269|PubMed:17709752}. FUNCTION: Involved in the disassembling mechanism of the intact light-harvesting complex of photosystem II (LHCII) in the thylakoid membranes. Required to trigger chlorophyll degradation during natural and dark-induced leaf senescence. {ECO:0000269|PubMed:17513504, ECO:0000269|PubMed:17709752, ECO:0000269|PubMed:17714430}. ENOG411DTAW GDI1,GDI2 Q96254,O24653,Q9LXC0 GDI1_ARATH,GDI2_ARATH,GDI_ARATH Guanosine nucleotide diphosphate dissociation inhibitor 1 (AtGDI1),Guanosine nucleotide diphosphate dissociation inhibitor 2 (AtGDI2),Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 (AtGDI) FUNCTION: Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP. {ECO:0000269|PubMed:8953772, ECO:0000269|PubMed:9091322}.,FUNCTION: Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP. {ECO:0000269|PubMed:9461425}.,FUNCTION: Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP. {ECO:0000250}. R-ATH-194840;R-ATH-6798695;R-ATH-8876198; 49819,49539,49549 Guanosine nucleotide diphosphate dissociation inhibitor 1 (AtGDI1),Guanosine nucleotide diphosphate dissociation inhibitor 2 (AtGDI2),Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 (AtGDI) cytosol [GO:0005829]; GTPase activator activity [GO:0005096]; oxidoreductase activity [GO:0016491]; Rab GDP-dissociation inhibitor activity [GO:0005093]; protein transport [GO:0015031]; small GTPase mediated signal transduction [GO:0007264],apoplast [GO:0048046]; cytosol [GO:0005829]; plasmodesma [GO:0009506]; GTPase activator activity [GO:0005096]; oxidoreductase activity [GO:0016491]; Rab GDP-dissociation inhibitor activity [GO:0005093]; protein transport [GO:0015031]; small GTPase mediated signal transduction [GO:0007264],apoplast [GO:0048046]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; oxidoreductase activity [GO:0016491]; Rab GDP-dissociation inhibitor activity [GO:0005093]; protein transport [GO:0015031]; small GTPase mediated signal transduction [GO:0007264] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, floral buds and siliques. {ECO:0000269|PubMed:8953772, ECO:0000269|PubMed:9091322}.,TISSUE SPECIFICITY: Expressed in roots and floral buds. {ECO:0000269|PubMed:9461425}. locus:2051839;,locus:2080527;,locus:2144741; AT2G44100,AT3G59920,AT5G09550 rab gdp dissociation inhibitor Guanosine nucleotide diphosphate dissociation inhibitor Q10NA3,Q688K0,Q0DJB7 Q10NA3_ORYSJ,Q688K0_ORYSJ,Q0DJB7_ORYSJ Os03g0277000 LOC_Os03g16900 Os03g0277000 OsJ_10334 OSNPB_030277000,Os05g0418000 OsJ_18568 OSNPB_050418000 P0426G01.1 P0579A05.9,Os05g0304400 Os05g0304400 OsJ_17976 OSNPB_050304400 ENOG411DTAV POLD2 O48520,F4IM00 DPOD2_ARATH,F4IM00_ARATH DNA polymerase delta small subunit (EC 2.7.7.7),DNA polymerase delta small subunit FUNCTION: The function of the small subunit is not yet clear. R-ATH-110314;R-ATH-174411;R-ATH-174414;R-ATH-174417;R-ATH-174437;R-ATH-5651801;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091;R-ATH-69166;R-ATH-69183; 2.7.7.7 49410,49539 DNA polymerase delta small subunit (EC 2.7.7.7),DNA polymerase delta small subunit delta DNA polymerase complex [GO:0043625]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; cellular response to DNA damage stimulus [GO:0006974]; DNA strand elongation involved in DNA replication [GO:0006271],DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA replication [GO:0006260] locus:2060010; AT2G42120 dna polymerase delta small DNA polymerase delta small subunit (EC 2.7.7.7) Q9LRE5 DPOD2_ORYSJ POLD2 Os03g0128500 LOC_Os03g03650 OJ1528D07.1 OsJ_09265 FUNCTION: The function of the small subunit is not yet clear. ENOG411DTAU MNS4,mannosidase 4 Q9FG93,A0A1P8BC88,A0A1P8BC90 MNS4_ARATH,A0A1P8BC88_ARATH,A0A1P8BC90_ARATH Alpha-mannosidase I MNS4 (EC 3.2.1.-),alpha-1,2-Mannosidase (EC 3.2.1.-) FUNCTION: Can convert Man(9)GlcNAc(2) and Man(8)GlcNAc(2) into N-glycans with a terminal alpha-1,6-linked Man residue in the C-branch. Functions in the formation of unique N-glycan structures that are specifically recognized by components of the endoplasmic reticulum-associated degradation (ERAD) machinery, which leads to the degradation of misfolded glycoproteins. Most likely generates N-glycan signal on misfolded glycoproteins that is subsequently recognized by OS9. Required for ERAD of the heavily glycosylated and misfolded BRI1 variants BRI1-5 and BRI1-9. Does not seem to play role in N-glycan processing of correctly folded proteins destined for secretion. {ECO:0000269|PubMed:24737672}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. R-ATH-901032; 3.2.1.- 70096,63501,63224 Alpha-mannosidase I MNS4 (EC 3.2.1.-),alpha-1,2-Mannosidase (EC 3.2.1.-) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; alpha-mannosidase activity [GO:0004559]; calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]; N-glycan processing [GO:0006491]; protein glycosylation [GO:0006486]; ubiquitin-dependent ERAD pathway [GO:0030433],membrane [GO:0016020]; calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]; metabolic process [GO:0008152] locus:2170872; AT5G43710 alpha-mannosidase I alpha-1,2-Mannosidase (EC 3.2.1.-) Q0JIW3 Q0JIW3_ORYSJ Os01g0773600 Os01g0773600 OSNPB_010773600 ENOG411DTAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Raffinose synthase or seed imbibition protein Sip1 Os04g0481100 protein (Fragment),Os04g0481100 protein A0A0P0WBQ5,A0A0P0WBF3 A0A0P0WBQ5_ORYSJ,A0A0P0WBF3_ORYSJ Os04g0481100 OSNPB_040481100 ENOG411DTAY Q8L4C5 Q8L4C5_ARATH Serine/arginine repetitive matrix-like protein (Uncharacterized protein At4g22190) 42333 Serine/arginine repetitive matrix-like protein (Uncharacterized protein At4g22190) locus:2132050; AT4G22190 NA Expressed protein (Os11g0497350 protein) Q2R3X6 Q2R3X6_ORYSJ LOC_Os11g30430 Os11g0497350 OSNPB_110497350 ENOG411DTAX CYB561A,ACYB-2 Q8L856,A0A1P8B653 ACFR1_ARATH,A0A1P8B653_ARATH Transmembrane ascorbate ferrireductase 1 (EC 1.16.5.1) (Cytochrome b561) (Artb561-1) (AtCytb561) (Protein b561A.tha5) (Tonoplast Cyt-b561) (TCytb),Cytochrome b561/ferric reductase transmembrane protein family FUNCTION: Two-heme-containing cytochrome. Catalyzes ascorbate-dependent trans-membrane ferric-chelate reduction. Able to use dihydrolipoic acid (DHLA) as an alternative substrate to ascorbate. {ECO:0000269|PubMed:14730083, ECO:0000269|PubMed:17376442, ECO:0000269|PubMed:22526465}. R-ATH-917937; 1.16.5.1; 1.16.5.1 25865,31024 Transmembrane ascorbate ferrireductase 1 (EC 1.16.5.1) (Cytochrome b561) (Artb561-1) (AtCytb561) (Protein b561A.tha5) (Tonoplast Cyt-b561) (TCytb),Cytochrome b561/ferric reductase transmembrane protein family chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; protein domain specific binding [GO:0019904],integral component of membrane [GO:0016021]; oxidation-reduction process [GO:0055114] DEVELOPMENTAL STAGE: Strong redution in expression levels in flowers following fertilization. {ECO:0000269|PubMed:15032866}. TISSUE SPECIFICITY: Expressed in roots, seedlings and leaves. Lower expression in flowers. Expressed in the L1 layer of the shoot apex, in the epidermis of leaf primordia and young leaves and in vascular bundles. In the differentiation zone of the root, detected in the pericycle and in the epidermis, but not in the cortex. Strongly expressed in the lateral part of the root cap and in the epidermis of the root tip, but not in the meristematic tissue. Not expressed in lateral roots. In mature embryos, expressed in the epidermis, cotyledon tips and root tips. {ECO:0000269|PubMed:15032866}. locus:2131859; AT4G25570 Two-heme-containing cytochrome. Catalyzes ascorbate- dependent trans-membrane electron transfer by utilizing a concerted H( ) e(-) transfer mechanism Probable ascorbate-specific transmembrane electron transporter 1 (EC 1.-.-.-) (Cytochrome b561-1),Probable ascorbate-specific transmembrane electron transporter 2 (EC 1.-.-.-) (Cytochrome b561-2),Os02g0642300 protein (Fragment) A3A9H6,Q7XMK3,A0A0P0VML2 ACET1_ORYSJ,ACET2_ORYSJ,A0A0P0VML2_ORYSJ Os02g0642300 LOC_Os02g42890 OJ1112_G03.14 OsJ_07691,Os04g0533500 LOC_Os04g45090 OsJ_15584.15 OSJNBb0039L24,Os02g0642300 OSNPB_020642300 FUNCTION: Two-heme-containing cytochrome. Catalyzes ascorbate-dependent trans-membrane electron transfer by utilizing a concerted H(+)/e(-) transfer mechanism (By similarity). {ECO:0000250}. ENOG411DTAG MDN11.10 Q9FI36 Q9FI36_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At5g48020) (Uncharacterized protein At5g48020) 39846 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At5g48020) (Uncharacterized protein At5g48020) locus:2162682; AT5G48020 NA Os02g0717500 protein (cDNA clone:J013092A12, full insert sequence) Q6ZGV7 Q6ZGV7_ORYSJ Os02g0717500 Os02g0717500 OJ2056_H01.18 OsJ_08154 OSNPB_020717500 ENOG411DTAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0430000 protein (cDNA clone:J023038L09, full insert sequence),Os08g0430000 protein (Fragment) Q0J5J9,A0A0N7KPW3 Q0J5J9_ORYSJ,A0A0N7KPW3_ORYSJ Os08g0430000 Os08g0430000 OSNPB_080430000,Os08g0430000 OSNPB_080430000 ENOG411DTAE Q84MA1 Q84MA1_ARATH At1g06560 (NOL1/NOP2/sun family protein) (Uncharacterized protein At1g06560) 65513 At1g06560 (NOL1/NOP2/sun family protein) (Uncharacterized protein At1g06560) RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; RNA methylation [GO:0001510] locus:2009170; AT1G06560 PUA domain Os08g0365900 protein (Putative nucleolar protein) (cDNA clone:J033082D18, full insert sequence),Os08g0365900 protein (Fragment) Q7F1D1,A0A0P0XEV1 Q7F1D1_ORYSJ,A0A0P0XEV1_ORYSJ OJ1484_G09.128 Os08g0365900 OsJ_27075 OSNPB_080365900,Os08g0365900 OSNPB_080365900 ENOG411DTAD Q8RWI4,F4IYD5,F4IYD7 Q8RWI4_ARATH,F4IYD5_ARATH,F4IYD7_ARATH Lysine-tRNA ligase (Uncharacterized protein At3g01060),Lysine-tRNA ligase 51024,50210,41428 Lysine-tRNA ligase (Uncharacterized protein At3g01060),Lysine-tRNA ligase ligase activity [GO:0016874]; circadian rhythm [GO:0007623],ligase activity [GO:0016874] locus:2102162; AT3G01060 NA Os05g0512200 protein B9FL32 B9FL32_ORYSJ Os05g0512200 OsJ_19172 OSNPB_050512200 ENOG411DTAK Q8LPI5 Q8LPI5_ARATH Putative WD-repeat protein (Transducin family protein / WD-40 repeat family protein) R-ATH-8951664; 55413 Putative WD-repeat protein (Transducin family protein / WD-40 repeat family protein) Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2139335; AT4G03020 WD40 Os05g0144100 protein (Fragment),Os05g0407200 protein (Putative WD-40 repeat protein) (Putative WD-repeat protein) (cDNA clone:J013144D17, full insert sequence) Q0DKT7,Q6L548 Q0DKT7_ORYSJ,Q6L548_ORYSJ Os05g0144100 Os05g0144100 OSNPB_050144100,Os05g0407200 Os05g0407200 OJ1657_H11.7 OsJ_18511 OSNPB_050407200 P0040B10.4 ENOG411DTAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411DTAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GMC oxidoreductase HOTHEAD protein, putative, expressed (Os10g0524500 protein) (Putative glucose-methanol-choline(GMC) oxidoreductase) (Putative mandelonitrile lyase) (cDNA clone:002-117-A02, full insert sequence) (cDNA clone:J033035L09, full insert sequence) Q8H094 Q8H094_ORYSJ NP1 LOC_Os10g38050 Os10g0524500 OsJ_32214 OSNPB_100524500 ENOG411DTAN Q8GUH2 Y1015_ARATH Uncharacterized protein At1g01500 35926 Uncharacterized protein At1g01500 integral component of membrane [GO:0016021] locus:2025401; AT1G01500 NA NA NA NA NA NA NA NA ENOG411DTAM PTAC10 F4JF21 PTA10_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (pTAC10) (Plastid-encoded RNA polymerase-associated protein 3) (PEP-associated protein 3) (Protein PIGMENT DEFECTIVE 312) Seedling lethal (inferred from pigment defect)-D. Meinke-2002 78814 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (pTAC10) (Plastid-encoded RNA polymerase-associated protein 3) (PEP-associated protein 3) (Protein PIGMENT DEFECTIVE 312) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; nucleic acid binding [GO:0003676] locus:2101150; AT3G48500 NA Os01g0901900 protein (cDNA clone:J013119G01, full insert sequence) Q5N6Y3 Q5N6Y3_ORYSJ Os01g0901900 OSNPB_010901900 P0035F12.33 P0551C06.14 ENOG411EF2F B-box domain protein 26 O80748 O80748_ARATH B-box zinc finger family protein (T13D8.14 protein) 28976 B-box zinc finger family protein (T13D8.14 protein) intracellular [GO:0005622]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2195643; AT1G60250 NA NA NA NA NA NA NA NA ENOG411DTA3 PGPS2,PGPS1 Q9M2W3,O80952 PGPS2_ARATH,PGPS1_ARATH CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2 (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase 2) (PGP synthase 2),CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase 1) (PGP synthase 1) DISRUPTION PHENOTYPE: Pale green plants with impaired photosynthesis. {ECO:0000269|PubMed:12068104}. Pale green-C. Benning-2002 FUNCTION: This protein catalyzes the committed step to the synthesis of the acidic phospholipids. {ECO:0000269|PubMed:11741606}.,FUNCTION: Catalyzes the committed step to the synthesis of the acidic phospholipids. Transfers specifically a phosphatidyl group from CDP-diacylglycerol to glycerol-3-phosphate to form phosphatidylglycerophosphate. Cannot catalyze the phosphatidyl group transfer to inositol, serine, choline or phosphatidylglycerol. Possesses high activity with CDP-dipalmitoylglycerol and low activity with CDP-dioleoylglycerol. {ECO:0000269|PubMed:11741606, ECO:0000269|PubMed:12068104}. PATHWAY: Phospholipid metabolism; phosphatidylglycerol biosynthesis; phosphatidylglycerol from CDP-diacylglycerol: step 1/2. MetaCyc:AT3G55030-MONOMER;,MetaCyc:AT2G39290-MONOMER; 2.7.8.5 25220,32158 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2 (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase 2) (PGP synthase 2),CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase 1) (PGP synthase 1) chloroplast envelope [GO:0009941]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; organelle membrane [GO:0031090]; CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [GO:0008444]; manganese ion binding [GO:0030145]; glycerophospholipid biosynthetic process [GO:0046474]; phosphatidylglycerol biosynthetic process [GO:0006655],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [GO:0008444]; manganese ion binding [GO:0030145]; phosphatidylglycerol biosynthetic process [GO:0006655]; phospholipid biosynthetic process [GO:0008654]; thylakoid membrane organization [GO:0010027] locus:2097223;,locus:2056068; AT3G55030,AT2G39290 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase Cardiolipin synthase (CMP-forming), mitochondrial (CLS) (EC 2.7.8.41),Os03g0283600 protein (Fragment) Q8H8U0,A0A0P0VW68 CLS_ORYSJ,A0A0P0VW68_ORYSJ Os03g0283600 LOC_Os03g17520,Os03g0283600 OSNPB_030283600 FUNCTION: Catalyzes the synthesis of cardiolipin (CL) (diphosphatidylglycerol) by specifically transferring a phosphatidyl group from CDP-diacylglycerol to phosphatidylglycerol (PG). CL is a key phospholipid in mitochondrial membranes and plays important roles in maintaining the functional integrity and dynamics of mitochondria under both optimal and stress conditions. {ECO:0000250|UniProtKB:Q93YW7}. ENOG411DTA2 MAIL1 F4IFD0,Q9SK32 MAIL2_ARATH,MAIL1_ARATH Protein MAIN-LIKE 2,Protein MAIN-LIKE 1 DISRUPTION PHENOTYPE: Strong developmental phenotypes, such as extremely short, and agravitropic primary roots, small aerial organ size, altered shape and pale white leaves, bushy inflorescence and reduced number of seeds. {ECO:0000269|PubMed:24635680}. FUNCTION: Maybe required to maintain cell division activity in meristematic cells. {ECO:0000250|UniProtKB:Q9LMT7}.,FUNCTION: Acts as an important factor for cell fate determination and maintenance throughout plant development. Required for the organization of the root apical meristem (RAM) and the shoot apical meristem (SAM). Required to maintain genome stability and cell division activity in meristematic cells. {ECO:0000269|PubMed:24635680}. 75509,57481 Protein MAIN-LIKE 2,Protein MAIN-LIKE 1 nucleus [GO:0005634]; transaminase activity [GO:0008483],nucleus [GO:0005634]; transaminase activity [GO:0008483]; meristem maintenance [GO:0010073]; regulation of root meristem growth [GO:0010082] TISSUE SPECIFICITY: Expressed in root tips, the shoot apical meristem (SAM), leaves, mature flowers and embryos. {ECO:0000269|PubMed:24635680}. locus:504956030;,locus:2047339; AT2G04865,AT2G25010 Serine threonine-protein phosphatase 7 long form Os07g0507600 protein (Serine/threonine phosphatase PP7-related-like) Q69S26 Q69S26_ORYSJ Os07g0507600 Os07g0507600 OSJNBb0062D12.133 OSNPB_070507600 ENOG411DTA1 FH2,FH6 O22824,Q9FJX6 FH2_ARATH,FH6_ARATH Formin-like protein 2 (AtFH2) (AtFORMIN-2),Formin-like protein 6 (AtFH6) (AtFORMIN-6) FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. {ECO:0000250}.,FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. {ECO:0000269|PubMed:15319477}. 98320,98650 Formin-like protein 2 (AtFH2) (AtFORMIN-2),Formin-like protein 6 (AtFH6) (AtFORMIN-6) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; actin binding [GO:0003779],cell wall [GO:0005618]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleolus [GO:0005730]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; spindle [GO:0005819]; actin binding [GO:0003779] locus:2043989;,locus:2158576; AT2G43800,AT5G67470 Formin-like protein NA NA NA NA NA NA NA ENOG411DTA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: NEDD4 binding protein NA NA NA NA NA NA NA ENOG411DTA7 NSI Q7X9V3 NSI_ARATH Acetyltransferase NSI (EC 2.3.1.-) (Nuclear shuttle protein-interacting protein) FUNCTION: Acetyltransferase that acetylates in vitro histones H2A and H3. Does not act as a transcriptional activator but might be involved in the sink-source transition. In case of begomoviruses infection, acetylates the capsid protein (CP), but not the nuclear shuttle protein (NSP). Required for begomovirus infection and systemic spread. {ECO:0000269|PubMed:12837950, ECO:0000269|PubMed:15452236, ECO:0000269|PubMed:16461385}. MISCELLANEOUS: Lacks the bromodomain involved in binding of other acetyltransferases to histones. 2.3.1.- 28649 Acetyltransferase NSI (EC 2.3.1.-) (Nuclear shuttle protein-interacting protein) chloroplast [GO:0009507]; nucleus [GO:0005634]; aralkylamine N-acetyltransferase activity [GO:0004059]; N-acetyltransferase activity [GO:0008080]; melatonin biosynthetic process [GO:0030187]; viral process [GO:0016032] DEVELOPMENTAL STAGE: Expressed in the apical meristem, root vasculature and all veins in the cotyledons of young developing seedlings. Loss of expression in the older maturing tissues. {ECO:0000269|PubMed:16461385}. TISSUE SPECIFICITY: Highly expressed in cauline leaves, at lower levels in stems, siliques, inflorescences and rosettes leaves and at very low levels in roots. Expressed in the xylem parenchyma and phloem of the leaves and root, and in guard cells of young leaves. {ECO:0000269|PubMed:12837950, ECO:0000269|PubMed:16461385}. locus:2195361; AT1G32070 Acetyltransferase Serotonin N-acetyltransferase 1, chloroplastic (OsSNAT1) (EC 2.3.1.87) (Nuclear shuttle protein-interacting protein homolog) (Probable acetyltransferase NSI) (EC 2.3.1.-),Os05g0481000 protein Q5KQI6,A0A0P0WNW7,A0A0P0WNN3 SNAT1_ORYSJ,A0A0P0WNW7_ORYSJ,A0A0P0WNN3_ORYSJ SNAT1 GNAT5 NSI SNAT Os05g0481000 LOC_Os05g40260 OsJ_018182 OsJ_18949 OSJNBa0095J22.4,Os05g0481000 OSNPB_050481000 FUNCTION: Catalyzes the N-acetylation of serotonin into N-acetylserotonin, the penultimate step in the synthesis of melatonin (PubMed:22998587, PubMed:24134674, PubMed:27121038). Catalyzes in vitro the N-acetylation of tryptamine to produce N-acetyltryptamine, 5-methoxytryptamine to produce melatonin and tyramine to produce N-acetyltyramine (PubMed:27121038). Acetyltransferase required for geminivirus infection and systemic spread (By similarity). {ECO:0000250|UniProtKB:Q7X9V3, ECO:0000269|PubMed:22998587, ECO:0000269|PubMed:24134674, ECO:0000269|PubMed:27121038}. ENOG411DTA6 ZFN2 O48772,Q94AD9,A0A1P8B250,A0A1P8AWC2,A0A1P8AWC1,A0A1P8AWC3,F4IUS5 C3H26_ARATH,C3H3_ARATH,A0A1P8B250_ARATH,A0A1P8AWC2_ARATH,A0A1P8AWC1_ARATH,A0A1P8AWC3_ARATH,F4IUS5_ARATH Zinc finger CCCH domain-containing protein 26 (AtC3H26) (Zinc finger CCCH domain-containing protein ZFN2),Zinc finger CCCH domain-containing protein 3 (AtC3H3) (EC 3.1.-.-) (Zinc finger CCCH domain-containing protein ZFN-like 4),Zinc finger nuclease 2,Zinc finger C-x8-C-x5-C-x3-H type family protein FUNCTION: Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. 3.1.-.- 49747,44704,47178,33377,35557,42524,50299 Zinc finger CCCH domain-containing protein 26 (AtC3H26) (Zinc finger CCCH domain-containing protein ZFN2),Zinc finger CCCH domain-containing protein 3 (AtC3H3) (EC 3.1.-.-) (Zinc finger CCCH domain-containing protein ZFN-like 4),Zinc finger nuclease 2,Zinc finger C-x8-C-x5-C-x3-H type family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; nuclease activity [GO:0004518],metal ion binding [GO:0046872],DNA binding [GO:0003677]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518] locus:2010562;,locus:2059380; AT2G32930,AT1G04990 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411DTA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF827 Os09g0458000 protein (Paramyosin-like protein) Q67TZ8 Q67TZ8_ORYSJ Os09g0458000 B1045B05.15 OSNPB_090458000 ENOG411DTA4 Q9SJW7 Q9SJW7_ARATH Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein At2g31290) 48696 Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein At2g31290) hydrolase activity [GO:0016787] locus:2042561; AT2G31290 Plant organelle RNA recognition domain Os06g0265900 protein A0A0P0WV69 A0A0P0WV69_ORYSJ Os06g0265900 OSNPB_060265900 ENOG411DTA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kinesin-associated protein (KAP) Os01g0884400 protein (Fragment) A0A0P0VBB5 A0A0P0VBB5_ORYSJ Os01g0884400 OSNPB_010884400 ENOG411DTA8 Q4PSG2 Q4PSG2_ARATH Alpha/beta-Hydrolases superfamily protein (Hydrolase) 35498 Alpha/beta-Hydrolases superfamily protein (Hydrolase) hydrolase activity [GO:0016787] locus:2184777; AT5G09430 hydrolase NA NA NA NA NA NA NA ENOG411E5E5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: transcription factor Transcription factor IBH1 (OsIBH1) (Basic helix-loop-helix protein 175) (OsbHLH175) (Protein ILI1-BINDING BHLH 1) (bHLH transcription factor bHLH175),Os04g0660100 protein (Fragment) Q7XR02,A0A0P0WG04 IBH1_ORYSJ,A0A0P0WG04_ORYSJ IBH1 BHLH175 Os04g0660100 LOC_Os04g56500 OSJNBa0015K02.11,Os04g0660100 OSNPB_040660100 FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that acts as negative regulator of cell elongation and plant development. Binds the transcription factor ILI1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}. MISCELLANEOUS: Plants over-expressing IBH1 show erect leaves with reduced angles of inclination. {ECO:0000305|PubMed:20009022}. ENOG411E5E4 Q9C593 Q9C593_ARATH At5g21940 (Expressed protein) (Hybrid signal transduction histidine kinase M-like protein) (Uncharacterized protein At5g21940) 28006 At5g21940 (Expressed protein) (Hybrid signal transduction histidine kinase M-like protein) (Uncharacterized protein At5g21940) kinase activity [GO:0016301] locus:504956449; AT5G21940 Inherit from KOG: Rna binding protein NA NA NA NA NA NA NA ENOG411E5E6 GRXC11 Q9LYC6 GRC11_ARATH Glutaredoxin-C11 (AtGrxC11) (Protein ROXY 4) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 11312 Glutaredoxin-C11 (AtGrxC11) (Protein ROXY 4) cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2099182; AT3G62950 Glutaredoxin NA NA NA NA NA NA NA ENOG411E5E0 DOGL3,DOGL2 Q58FV0,Q9SN45 DOGL3_ARATH,DOGL2_ARATH Protein DOG1-like 3,Protein DOG1-like 2 DISRUPTION PHENOTYPE: No germination phenotype. {ECO:0000269|PubMed:17065317}. 31544,28651 Protein DOG1-like 3,Protein DOG1-like 2 sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351] locus:2124157;,locus:2124152; AT4G18690,AT4G18680 DOG1 alpha splice variant NA NA NA NA NA NA NA ENOG411E5E3 O80986 O80986_ARATH At2g26110 (Bromodomain protein (DUF761)) (Uncharacterized protein At2g26110) 35372 At2g26110 (Bromodomain protein (DUF761)) (Uncharacterized protein At2g26110) integral component of membrane [GO:0016021]; response to abscisic acid [GO:0009737] locus:2057427; AT2G26110 Cotton fibre expressed protein Os06g0566500 protein Q5Z650,Q5Z649 Q5Z650_ORYSJ,Q5Z649_ORYSJ P0567G03.13-1 Os06g0566500 P0513E02.32-1 OSNPB_060566500,P0567G03.13-2 P0513E02.32-2 Os06g0566500 OSNPB_060566500 ENOG411E5E2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Beta-1,3-glucanase C-like protein (Os08g0135500 protein) (cDNA clone:002-149-H11, full insert sequence) Q6YYC4 Q6YYC4_ORYSJ Os08g0135500 OsJ_25958 OSNPB_080135500 P0680F05.39 ENOG411E4X9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML21 (Calmodulin-like protein 21) Q0DJ94 CML21_ORYSJ CML21 Os05g0312600 LOC_Os05g24780 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E4X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Orf258 protein Q8HCR0 Q8HCR0_ORYSJ orf258 ENOG411E4X3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os02g0662100 protein (Putative ZmGR1a) (cDNA clone:001-010-F04, full insert sequence) Q6H6L8 Q6H6L8_ORYSJ Os02g0662100 OJ1001_D02.3 OsJ_07828 OSNPB_020662100 P0516F12.21 ENOG411E4X2 LSM2 Q1H595 LSM2_ARATH Sm-like protein LSM2 (AtLSM2) (U6 snRNA-associated Sm-like protein LSM2) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000305|PubMed:23221597}. FUNCTION: Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-430039;R-ATH-72163;R-ATH-72165; 10694 Sm-like protein LSM2 (AtLSM2) (U6 snRNA-associated Sm-like protein LSM2) catalytic step 2 spliceosome [GO:0071013]; cytosol [GO:0005829]; Lsm1-7-Pat1 complex [GO:1990726]; P-body [GO:0000932]; precatalytic spliceosome [GO:0071011]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2014480; AT1G03330 SnRNP core Sm protein Sm-X5-like protein Sm-like protein LSM2 Q0J7Y5 Q0J7Y5_ORYSJ Os08g0154700 Os08g0154700 OSNPB_080154700 FUNCTION: Component of LSM protein complexes, which are involved in RNA processing. {ECO:0000256|PIRNR:PIRNR016394}. ENOG411E4X1 Cdf2 Q3C1C7 Q3C1C7_ARATH Cell growth defect factor-2 (Cell growth defect protein) 12488 Cell growth defect factor-2 (Cell growth defect protein) integral component of membrane [GO:0016021] locus:504956166; AT1G30845 cell growth defect factor 2 Os03g0127000 protein Q0DVJ4 Q0DVJ4_ORYSJ Os03g0127000 OSNPB_030127000 ENOG411E4X0 K1F13.27 Q9FJY1 Q9FJY1_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Similarity to pathogenesis-related protein) (Uncharacterized protein At5g66590) (Uncharacterized protein K1F13.27) 20099 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Similarity to pathogenesis-related protein) (Uncharacterized protein At5g66590) (Uncharacterized protein K1F13.27) locus:2154835; AT5G66590 STS14 protein-like NA NA NA NA NA NA NA ENOG411E4X7 Q9SGS5 Y1607_ARATH Uncharacterized protein At1g76070 30286 Uncharacterized protein At1g76070 plasma membrane [GO:0005886] locus:2199762; AT1G76070 NA Os09g0542900 protein (cDNA clone:J033044N08, full insert sequence) Q7XJ08 Q7XJ08_ORYSJ Os09g0542900 Os09g0542900 OSNPB_090542900 P0478E02.19 ENOG411E4X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E4X5 COX6B-1 Q9S7L9 CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 (AtCOX6b-1) FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase. 21195 Cytochrome c oxidase subunit 6b-1 (AtCOX6b-1) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; copper ion binding [GO:0005507]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Gradually expressed after germination. {ECO:0000269|PubMed:11434463}. TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:11250078}. locus:2009497; AT1G22450 cytochrome C oxidase Cytochrome c oxidase subunit,Cytochrome c oxidase subunit 6b (Cytochrome c oxidase subunit 6b-1) (Cytochrome c oxidase subunit, putative, expressed) (Os03g0390400 protein) (cDNA clone:J013033A17, full insert sequence) Q9FE02,Q9SXV0,Q6KAE3 Q9FE02_ORYSJ,Q9SXV0_ORYSJ,Q6KAE3_ORYSJ COX6b2 Os04g0498200 OSJNBa0067K08.22 OSNPB_040498200,COX6b-1 COX6b1 LOC_Os03g27290 Os03g0390400 OsJ_11115 OSJNBa0017N12.7 OSNPB_030390400,Os02g0791400 OJ1046_F07.29 OSNPB_020791400 FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. {ECO:0000256|PIRNR:PIRNR000278}. ENOG411E4X4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTJ8 F3A4.130,MMG4.12 Q9SN13,A0A1P8BFY0,F4K4L3 Q9SN13_ARATH,A0A1P8BFY0_ARATH,F4K4L3_ARATH At3g50050 (Eukaryotic aspartyl protease family protein) (Uncharacterized protein F3A4.130),Eukaryotic aspartyl protease family protein 69749,52767,70295 At3g50050 (Eukaryotic aspartyl protease family protein) (Uncharacterized protein F3A4.130),Eukaryotic aspartyl protease family protein integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2083098;,locus:2167776; AT3G50050,AT5G43100 aspartic proteinase-like protein Os07g0592200 protein (Putative CND41, chloroplast nucleoid DNA binding protein),Os07g0592200 protein (Fragment) Q84RX6,A0A0P0X8C2,A0A0P0X893 Q84RX6_ORYSJ,A0A0P0X8C2_ORYSJ,A0A0P0X893_ORYSJ OJ1710_H11.105-1 Os07g0592200 OSNPB_070592200,Os07g0592200 OSNPB_070592200 ENOG411E5EE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0582800 protein A0A0P0W0E0 A0A0P0W0E0_ORYSJ Os03g0582800 OSNPB_030582800 ENOG411E5EG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTJ9 DRP5A F4HPR5 DRP5A_ARATH Dynamin-related protein 5A (Protein ARC5-like) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but when grown at 16 degrees Celsius, seedlings grow slowly and root tip cells form incomplete or twisted cell plates. {ECO:0000269|PubMed:18809930}. Grow normally when seeds were germinated under conventional conditions (21°C) mutant seedlings grow more slowly than those of the wild type at a lower temperature (16°C). In both conditions the chloroplast size and number per cell in the drp5A mutants. Mutant root tips display perturbation of the cell array and formation of incomplete or twisted cell plates similar to other A. thaliana mutants of cytokinetic proteins. FUNCTION: Probable microtubule-associated force-producing protein that is targeted to the forming cell plate during cytokinesis. May play a role in cell division. {ECO:0000269|PubMed:18809930}. 90616 Dynamin-related protein 5A (Protein ARC5-like) cell plate [GO:0009504]; cytoplasm [GO:0005737]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; cytokinesis by cell plate formation [GO:0000911]; mitochondrial fission [GO:0000266] TISSUE SPECIFICITY: Expressed in root and leaf meristems. {ECO:0000269|PubMed:18809930}. locus:2037026; AT1G53140 dynamin-like protein C-like Dynamin-like (Os01g0748000 protein) Q5JNJ6 Q5JNJ6_ORYSJ P0481E12.20 Os01g0748000 OSNPB_010748000 ENOG411E4XK CML37 Q9FIH9 CML37_ARATH Calcium-binding protein CML37 (Calmodulin-like protein 37) FUNCTION: Potential calcium sensor that binds calcium in vitro. {ECO:0000269|PubMed:17579812}. 20602 Calcium-binding protein CML37 (Calmodulin-like protein 37) cytoplasm [GO:0005737]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; response to ozone [GO:0010193] TISSUE SPECIFICITY: Expressed in cotyledons, stipule, young leaves and at the hypocotyl-root junction. In mature root, expressed in the stele, cortex, emerging lateral root, root tip and root cap. In mature plant, expressed at the base of cauline and floral branches, and in rosette and cauline leaves. Expressed from stage 9 to 14 of flower development in anthers. At stage 15, expressed in carpel, sepals, petals and pollen until dehiscence. Expressed in developing seeds and young siliques. {ECO:0000269|PubMed:17579812}. locus:2162326; AT5G42380 calcium-binding protein NA NA NA NA NA NA NA ENOG411E4XJ HSP17.7,HSP17.6 O81822,P29830 HS177_ARATH,HS176_ARATH 17.7 kDa class II heat shock protein (17.7 kDa heat shock protein) (AtHsp17.7),17.6 kDa class II heat shock protein (17.6 kDa heat shock protein) (AtHsp17.6) 17685,17623 17.7 kDa class II heat shock protein (17.7 kDa heat shock protein) (AtHsp17.7),17.6 kDa class II heat shock protein (17.6 kDa heat shock protein) (AtHsp17.6) cytosol [GO:0005829]; unfolded protein binding [GO:0051082]; hyperosmotic response [GO:0006972]; protein folding [GO:0006457]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542],cytoplasm [GO:0005737]; response to heat [GO:0009408] DEVELOPMENTAL STAGE: Expressed in seeds from 1 to 4 days after imbibition. {ECO:0000269|PubMed:11576425}. locus:2143024;,locus:2143109; AT5G12030,AT5G12020 Hsp20/alpha crystallin family 18.0 kDa class II heat shock protein (18.0 kDa heat shock protein) (OsHsp18.0) Q5VRY1 HSP18_ORYSJ HSP18.0 Os01g0184100 LOC_Os01g08860 P0489A01.22 ENOG411E4XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E4XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain BURP domain-containing protein 15 (OsBURP15) (Anther-specific protein 8),Os09g0480900 protein (Fragment),Os09g0481000 protein Q69QR8,A0A0P0XNW9,A0A0P0XNJ3 BURPF_ORYSJ,A0A0P0XNW9_ORYSJ,A0A0P0XNJ3_ORYSJ BURP15 RA8 Os09g0480900 LOC_Os09g30320 P0463D04.17-1 P0463G11.32-1,Os09g0480900 OSNPB_090480900,Os09g0481000 OSNPB_090481000 ENOG411E4XM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os10g0575401 protein C7J7H5 C7J7H5_ORYSJ Os10g0575401 OSNPB_100575401 ENOG411E4XC MED11 Q6ID77,A0A178VPC5,A0A1I9LSU1 MED11_ARATH,A0A178VPC5_ARATH,A0A1I9LSU1_ARATH Mediator of RNA polymerase II transcription subunit 11,Expressed protein Mutant plant Does Not show the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness. FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364147}. 13322,17343,10002 Mediator of RNA polymerase II transcription subunit 11,Expressed protein mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription, DNA-templated [GO:0006351],mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104] locus:1006230250; AT3G01435 mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 (Mediator complex subunit 11) Q6YUV3 Q6YUV3_ORYSJ MED11 Os02g0189100 OJ1145_F01.25 OSJNBb0031B09.4 OSNPB_020189100 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364147}. ENOG411E4XB LSM3B,LSM3A Q9C6K5,Q9LMN4 LSM3B_ARATH,LSM3A_ARATH Sm-like protein LSM3B (AtLSM3B) (U6 snRNA-associated Sm-like protein LSM3B),Sm-like protein LSM3A (AtLSM3A) (U6 snRNA-associated Sm-like protein LSM3A) FUNCTION: Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-430039;R-ATH-72163; 11286,11253 Sm-like protein LSM3B (AtLSM3B) (U6 snRNA-associated Sm-like protein LSM3B),Sm-like protein LSM3A (AtLSM3A) (U6 snRNA-associated Sm-like protein LSM3A) catalytic step 2 spliceosome [GO:0071013]; Lsm1-7-Pat1 complex [GO:1990726]; P-body [GO:0000932]; precatalytic spliceosome [GO:0071011]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688]; RNA binding [GO:0003723]; cytoplasmic mRNA processing body assembly [GO:0033962]; mRNA splicing, via spliceosome [GO:0000398]; nuclear-transcribed mRNA catabolic process [GO:0000956] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2036257;,locus:2014922; AT1G76860,AT1G21190 U6 snRNA-associated Sm-like protein Os01g0866700 protein (Small nuclear ribonucleoprotein-like) (cDNA clone:001-012-B01, full insert sequence) (cDNA clone:J033029N05, full insert sequence) Q5N9F1 Q5N9F1_ORYSJ Os01g0866700 Os01g0866700 OsJ_04201 OSNPB_010866700 P0505D12.39 ENOG411E4XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0645000 protein (cDNA clone:002-176-D08, full insert sequence),Os08g0330301 protein (Fragment) Q6H639,A0A0P0XEQ8 Q6H639_ORYSJ,A0A0P0XEQ8_ORYSJ Os02g0645000 OJ1282_H11.36 OSNPB_020645000 P0030D07.14,Os08g0330301 OSNPB_080330301 ENOG411E5EB Q94F23 Q94F23_ARATH Transmembrane protein (Uncharacterized protein At1g27290; F17L21.8) (Uncharacterized protein F17L21.8) 15676 Transmembrane protein (Uncharacterized protein At1g27290; F17L21.8) (Uncharacterized protein F17L21.8) integral component of membrane [GO:0016021] locus:2015944; AT1G27290 NA NA NA NA NA NA NA NA ENOG411E4XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin-induced SAUR NA NA NA NA NA NA NA ENOG411E4XF BBX32 Q9LJB7 BBX32_ARATH B-box zinc finger protein 32 (EIP6, EMF1-INTERACTING PROTEIN 6) Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is smaller. Short hypocotyl and small cotyledons under red light-P. Quail-2006 FUNCTION: Repressor of light-mediated regulation of seedling development. Functions by suppressing the activities of positive cofactors like BBX21 and HY5 involved in modulating light-regulated gene expression and growth. {ECO:0000269|PubMed:21632973}. 24716 B-box zinc finger protein 32 (EIP6, EMF1-INTERACTING PROTEIN 6) cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; blue light signaling pathway [GO:0009785]; negative regulation of transcription, DNA-templated [GO:0045892]; photomorphogenesis [GO:0009640]; red or far-red light signaling pathway [GO:0010017]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2092940; AT3G21150 Inherit from euNOG: B-box zinc finger family protein NA NA NA NA NA NA NA ENOG411E4XE MUD21.4 Q9FL00 Q9FL00_ARATH Emb|CAB62433.1| (Membrane-associated kinase regulator-like protein) 20362 Emb|CAB62433.1| (Membrane-associated kinase regulator-like protein) kinase activity [GO:0016301] locus:2175004; AT5G66800 NA NA NA NA NA NA NA NA ENOG411E4XD YLS3,AtXYP10 O64864,O64865 YLS3_ARATH,O64865_ARATH Protein YLS3 (Protein YELLOW-LEAF-SPECIFIC GENE 3) (Xylogen-like protein 9) (AtXYLP9),At2g44300 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At2g44300) (Xylogen like protein 10) 21579,21706 Protein YLS3 (Protein YELLOW-LEAF-SPECIFIC GENE 3) (Xylogen-like protein 9) (AtXYLP9),At2g44300 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At2g44300) (Xylogen like protein 10) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; lipid transport [GO:0006869],anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; lipid transport [GO:0006869] DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:21558309}. TISSUE SPECIFICITY: Expressed in leaves, stems, cauline leaves and sepals. Expressed at low levels in roots. {ECO:0000269|PubMed:21558309}. locus:2050482;,locus:2050492; AT2G44290,AT2G44300 nonspecific lipid-transfer protein NA NA NA NA NA NA NA ENOG411E4XZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family NA NA NA NA NA NA NA ENOG411E4XY Q1H5D6 Q1H5D6_ARATH At3g63390 19162 At3g63390 plastid [GO:0009536] locus:2087373; AT3G63390 NA Expressed protein (Os11g0616200 protein) (cDNA clone:J023004N19, full insert sequence) Q2R165 Q2R165_ORYSJ Os11g0616200 LOC_Os11g40200 Os11g0616200 OsJ_34635 OSNPB_110616200 ENOG411E4XX Q84RF4 Q84RF4_ARATH RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At2g34200/F13P17.4) 24660 RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At2g34200/F13P17.4) integral component of membrane [GO:0016021]; membrane [GO:0016020]; zinc ion binding [GO:0008270] locus:2040949; AT2G34200 RINGv Os01g0731800 protein (cDNA clone:J023148N13, full insert sequence),Os01g0731800 protein Q5JM80,A0A0N7KDP5 Q5JM80_ORYSJ,A0A0N7KDP5_ORYSJ Os01g0731800 Os01g0731800 OSJNBb0036G09.1 OSNPB_010731800 P0435H01.38,Os01g0731800 OSNPB_010731800 ENOG411EIE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4XS ACI1 Q9M035 Q9M035_ARATH ALC-interacting protein 1 (At5g01370) (Uncharacterized protein T10O8_80) 48125 ALC-interacting protein 1 (At5g01370) (Uncharacterized protein T10O8_80) nucleus [GO:0005634]; fruit dehiscence [GO:0010047] locus:2179182; AT5G01370 NA NA NA NA NA NA NA NA ENOG411E4XR Q9FGX6 Q9FGX6_ARATH At5g49410 (Gb|AAF36742.1) (Thiamine-phosphate synthase) (Uncharacterized protein At5g49410) 16921 At5g49410 (Gb|AAF36742.1) (Thiamine-phosphate synthase) (Uncharacterized protein At5g49410) locus:2158034; AT5G49410 NA Os08g0360000 protein (cDNA clone:002-180-C11, full insert sequence) Q6YYA4 Q6YYA4_ORYSJ Os08g0360000 Os08g0360000 OJ1014_E02.13 OsJ_27044 OSNPB_080360000 ENOG411E4XQ ZFP10 O80942 ZFP10_ARATH Zinc finger protein 10 (AtZFP10) FUNCTION: Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. MISCELLANEOUS: Plants over-expressing ZFP10 show are dwarf, have abnormal leaf morphology, flower early and are sterile. {ECO:0000269|PubMed:12154136}. 34125 Zinc finger protein 10 (AtZFP10) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}. locus:2040726; AT2G37740 zinc-finger protein 10 NA NA NA NA NA NA NA ENOG411E4XP Q9LMC7 Q9LMC7_ARATH AT1G19000 protein (F14D16.15) (Homeodomain-like superfamily protein) (Putative Myb-related transcription activator protein) 31231 AT1G19000 protein (F14D16.15) (Homeodomain-like superfamily protein) (Putative Myb-related transcription activator protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2011216; AT1G19000 Transcription factor NA NA NA NA NA NA NA ENOG411E4XW NF-YB11 Q9ZQH2 Q9ZQH2_ARATH Nuclear factor Y, subunit B11 (Putative CCAAT-binding transcription factor subunit) R-ATH-174430;R-ATH-68952;R-ATH-68962; 30550 Nuclear factor Y, subunit B11 (Putative CCAAT-binding transcription factor subunit) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2038648; AT2G27470 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Os09g0568200 protein A0A0P0XQL1 A0A0P0XQL1_ORYSJ Os09g0568200 OSNPB_090568200 ENOG411E4XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0579800 protein (cDNA clone:002-181-C12, full insert sequence) Q656G2 Q656G2_ORYSJ Os01g0579800 Os01g0579800 OsJ_02335 OSNPB_010579800 P0013G02.35 P0672C09.15 ENOG411E4XU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox associated leucine zipper Putative homeobox-leucine zipper protein HOX26 (HD-ZIP protein HOX26) (Homeodomain transcription factor HOX26) (OsHox26) Q67UX6 HOX26_ORYSJ HOX26 Os02g0149900 LOC_Os02g05640 OsJ_005235 OSJNBa0050G13.4 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E4XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: importin 13 Os11g0543800 protein (Fragment) Q0ISA5 Q0ISA5_ORYSJ Os11g0543800 OSNPB_110543800 ENOG411E5EU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain OJ1116_C07.8 protein (Os01g0309800 protein) Q8L4I2 Q8L4I2_ORYSJ OJ1116_C07.8 Os01g0309800 OsJ_01474 OSJNBa0008D05.31 OSNPB_010309800 P0551A11.11 ENOG411E5EW Q9LZ58 Q9LZ58_ARATH 60S ribosomal protein L36 (At5g02440) (Uncharacterized protein T22P11_30) 19644 60S ribosomal protein L36 (At5g02440) (Uncharacterized protein T22P11_30) ribosome [GO:0005840] locus:2181743; AT5G02440 NA NA NA NA NA NA NA NA ENOG411E5EP GATA22 Q9SZI6 GAT22_ARATH Putative GATA transcription factor 22 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 39345 Putative GATA transcription factor 22 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623]; gibberellic acid mediated signaling pathway [GO:0009740]; negative regulation of flower development [GO:0009910]; negative regulation of seed germination [GO:0010187]; regulation of chlorophyll biosynthetic process [GO:0010380]; regulation of gene expression [GO:0010468]; response to cytokinin [GO:0009735]; response to light stimulus [GO:0009416] locus:2120845; AT4G26150 Transcription factor Os07g0246901 protein Q6YSY7 Q6YSY7_ORYSJ Os07g0246901 OsJ_23701 OSJNBa0003K21.32 OSNPB_070246901 P0639B07.6 ENOG411DXVG ELF5A-3,ELF5A-1 Q9C505,Q9XI91,Q8LGI2 IF5A3_ARATH,IF5A1_ARATH,SCPDL_ARATH Eukaryotic translation initiation factor 5A-3 (AtELF5A-3) (eIF-5A-3),Eukaryotic translation initiation factor 5A-1 (AtELF5A-1) (eIF-5A-1),Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 (SDH) (EC 1.-.-.-) DISRUPTION PHENOTYPE: No visible phenotype, but presence of extra root protoxylem cell files. {ECO:0000269|PubMed:24163315}. FUNCTION: The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in supporting growth and plays a regulatory role in the response to sub-lethal osmotic and nutrient stress. {ECO:0000269|PubMed:20492553}.,FUNCTION: The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis. {ECO:0000269|PubMed:18304977}. R-ATH-204626;,R-ATH-114608; 1.-.-.- 17207,17360,49681 Eukaryotic translation initiation factor 5A-3 (AtELF5A-3) (eIF-5A-3),Eukaryotic translation initiation factor 5A-1 (AtELF5A-1) (eIF-5A-1),Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 (SDH) (EC 1.-.-.-) ribosome binding [GO:0043022]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743]; positive regulation of translational elongation [GO:0045901]; positive regulation of translational termination [GO:0045905]; translational frameshifting [GO:0006452],ribosome binding [GO:0043022]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743]; positive regulation of translational elongation [GO:0045901]; positive regulation of translational termination [GO:0045905]; translational frameshifting [GO:0006452]; xylem development [GO:0010089],chloroplast envelope [GO:0009941]; membrane [GO:0016020]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; oxidoreductase activity [GO:0016491] DEVELOPMENTAL STAGE: Increases at the onset of leaf senescence. {ECO:0000269|PubMed:20492553}. TISSUE SPECIFICITY: Expressed in the vascular tissues of roots, stems and leaves. Localized in phloem companion cells rather than sieve-tube members. Not expressed in xylem or procambium. Detected in root tips and in the chalazal tissue of fertilized ovules. {ECO:0000269|PubMed:20492553, ECO:0000269|PubMed:24163315}.,TISSUE SPECIFICITY: Expressed in leaf vasculature and inflorescence stems. Present in xylem tissue but not in phloem, and in developing vessel members, but not in mature vessels members. Detected in anthers. {ECO:0000269|PubMed:16600425, ECO:0000269|PubMed:18304977, ECO:0000269|PubMed:24163315}. locus:2007176;,locus:2014784;,locus:2175723; AT1G69410,AT1G13950,AT5G39410 saccharopine dehydrogenase Eukaryotic translation initiation factor 5A (eIF-5A) Q8GRL5,Q2QQ48,Q9AUW3,Q84ZK1 Q8GRL5_ORYSJ,Q2QQ48_ORYSJ,Q9AUW3_ORYSJ,Q84ZK1_ORYSJ OJ1513_F02.108 OJ1118_G09.115 Os07g0112800 OsJ_22854 OSNPB_070112800,Os12g0507200 LOC_Os12g32240 Os12g0507200 OsJ_36226 OSNPB_120507200,LOC_Os03g55150 Os03g0758800 OSJNBa0040E01.1 OSJNBb0048A17.2 OSNPB_030758800,P0453E05.118 Os07g0597000 OSNPB_070597000 ENOG411DR19 RFC3 Q8VXX4 RFC3_ARATH Replication factor C subunit 3 (AtRFC3) (Activator 1 subunit 3) (Protein EMBRYO DEFECTIVE 161) (Protein EMBRYO DEFECTIVE 251) (Protein EMBRYO DEFECTIVE 2775) Embryo defective; Preglobular / Globular-D. Meinke-2007 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174411;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091; 40600 Replication factor C subunit 3 (AtRFC3) (Activator 1 subunit 3) (Protein EMBRYO DEFECTIVE 161) (Protein EMBRYO DEFECTIVE 251) (Protein EMBRYO DEFECTIVE 2775) DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261] locus:2180315; AT5G27740 Replication factor C subunit Replication factor C subunit 5 (OsRFC5) (Activator 1 subunit 5) Q852K3 RFC5_ORYSJ RFC5 Os03g0792600 LOC_Os03g57870 OsJ_12910 OSJNBb0060J21.20 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. ENOG411DTJD MTP11 O80632 MTP11_ARATH Metal tolerance protein 11 (AtMTP11) DISRUPTION PHENOTYPE: Increased accumulation of manganese and hypersensitivity to elevated levels of manganese. {ECO:0000269|PubMed:17494768, ECO:0000269|PubMed:17559518}. On nutrient agar supplied with Mn2+ concentrations that ranged from basal to toxic levels the mutant was more sensitive to Mn2+ than the wild type as determined by significantly reduced shoot dry weights. Analysis of Mn2+ in shoots showed that both wild type and mutant accumulated similar Mn2+ concentrations at the various Mn2+ supplies despite the differences in growth.,The mutant showed the same level of tolerance to both Cu2+ and Zn2+ as the wild-type control.,The mutant was visually indistinguishable from wild type when grown in potting mix. However when grown on nutrient agar with a basal supply of Mn2+ the mutant accumulated more Mn2+ in shoots and roots (45-60% greater concentrations) than the wild type whereas the concentrations of other mineral nutrients did not differ between the lines. Sensitive to elevated manganese-A. Richardson-2007 FUNCTION: Cation/proton antiporter involved in endogenous manganese tolerance probably through vesicular trafficking and exocytosis. {ECO:0000269|PubMed:17494768, ECO:0000269|PubMed:17559518}. 44631 Metal tolerance protein 11 (AtMTP11) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; manganese ion transmembrane transporter activity [GO:0005384]; manganese:proton antiporter activity [GO:0010486]; cellular manganese ion homeostasis [GO:0030026]; response to copper ion [GO:0046688]; response to manganese ion [GO:0010042] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:17494768}. locus:2039697; AT2G39450 metal tolerance protein Metal tolerance protein 6 (OsMTP6),Metal tolerance protein 5 (OsMTP5),Os01g0837800 protein (Fragment) Q0DHJ5,Q5NA18,A0A0P0VAC4 MTP6_ORYSJ,MTP5_ORYSJ,A0A0P0VAC4_ORYSJ MTP6 Os05g0461900 LOC_Os05g38670 OJ1281_H05.16 OJ1525_A02.3,MTP5 Os01g0837800 LOC_Os01g62070 OsJ_04008 P0031D11.3,Os01g0837800 OSNPB_010837800 FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. ENOG411E2WP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glyoxalase family NA NA NA NA NA NA NA ENOG411DTJA Q9FIW8,A0A1P8BD72,F4KFU9 Q9FIW8_ARATH,A0A1P8BD72_ARATH,F4KFU9_ARATH Gb|AAF22924.1 (Uncharacterized protein At5g39780),Uncharacterized protein 71044,73855,71102 Gb|AAF22924.1 (Uncharacterized protein At5g39780),Uncharacterized protein ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412] locus:505006665; AT5G39785 Protein of unknown function (DUF1666) Os09g0413600 protein Q6ES33,Q6ES34 Q6ES33_ORYSJ,Q6ES34_ORYSJ P0643D11.22-2 Os09g0413600 OSNPB_090413600,P0643D11.22-1 Os09g0413600 OsJ_29350 OSNPB_090413600 ENOG411DTJY ABCI20 Q9LZ98,F4KCB8 AB20I_ARATH,F4KCB8_ARATH ABC transporter I family member 20 (ABC transporter ABCI.20) (AtABCI20) (GCN-related protein 3) (Non-intrinsic ABC protein 9),Non-intrinsic ABC protein 9 36922,40038 ABC transporter I family member 20 (ABC transporter ABCI.20) (AtABCI20) (GCN-related protein 3) (Non-intrinsic ABC protein 9),Non-intrinsic ABC protein 9 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810],ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215]; response to karrikin [GO:0080167] locus:2180107; AT5G02270 ABC transporter ABC transporter family protein, expressed (Os03g0316900 protein) (cDNA clone:J023008D19, full insert sequence) Q10MA7 Q10MA7_ORYSJ Os03g0316900 LOC_Os03g20170 Os03g0316900 OsJ_10625 OSNPB_030316900 ENOG411E2WZ Q9LKB6,Q4PSP3 Q9LKB6_ARATH,Q4PSP3_ARATH DNA-binding protein-like protein (Transcription factor-like protein) (Tumor-related protein-like) (Uncharacterized protein At3g14880),DNA-binding protein-related (Transcription factor-like protein) 28097,27313 DNA-binding protein-like protein (Transcription factor-like protein) (Tumor-related protein-like) (Uncharacterized protein At3g14880),DNA-binding protein-related (Transcription factor-like protein) sequence-specific DNA binding [GO:0043565]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351] locus:2086400; AT3G14880 NA Os05g0560200 protein Q0DG03 Q0DG03_ORYSJ Os05g0560200 Os05g0560200 OSNPB_050560200 ENOG411E2WN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0318400 protein (Fragment) Q7XXQ7 Q7XXQ7_ORYSJ Os01g0318400 Os01g0318400 OSNPB_010318400 ENOG411DXMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0073E02.4 protein (Os04g0516900 protein) (cDNA clone:002-150-B06, full insert sequence) Q7XKW4 Q7XKW4_ORYSJ Os04g0516900 Os04g0516900 OSJNBa0073E02.4 OSNPB_040516900 ENOG411EGP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXV1 NIC3,NIC2 Q9FMX8,Q9FMX7 NIC3_ARATH,NIC2_ARATH Nicotinamidase 3 (AtNIC3) (EC 3.5.1.19) (Nicotinamide deamidase 3),Nicotinamidase 2 (AtNIC2) (EC 3.5.1.19) (Nicotinamide deamidase 2) DISRUPTION PHENOTYPE: Delayed seed germination, reduced seed germination potential and increased sensitivity to abscisic acid (ABA) during germination. {ECO:0000269|PubMed:17587307}. A twofold decrease in nicotinamidase activity was seen in dry seed extracts of the mutant.,Freshly harvested nic2-1 seeds had a decreased level of poly(ADP)ribosylation compared to Ws seeds.,Mutant plants appeared to grow and develop normally. Their seeds phenotype have paler seed coat colour compared to wild-type Ws but the embryo was the same colour as WT.,Mutant seeds show hypersensitivity to nicotinamide (inhibitor of seed germination).,Significant 1.75-fold increase of NAD levels.,Treatment with 1 mM NADH promoted a small but significant increase in germination of mutant seeds.,Under moist-chilled (stratified) conditions mutant seeds showed a slightly retarded germination but there was no difference in the final percentage germination. However in the absence of a moist chilling pre-treatment (non-stratified) germination was delayed and the germination potential of mutatn seeds was significantly lower than that of Ws indicating a hyperdormant phenotype. Low germination rate; Pale seed coat-J. Gray-2007 FUNCTION: Catalyzes the deamidation of nicotinamide, an early step in the NAD(+) salvage pathway. Prevents the accumulation of intracellular nicotinamide, a known inhibitor of poly(ADP-ribose) polymerases (PARP enzymes). {ECO:0000269|PubMed:17587307}.,FUNCTION: Catalyzes the deamidation of nicotinamide, an early step in the NAD(+) salvage pathway. Prevents the accumulation of intracellular nicotinamide, a known inhibitor of poly(ADP-ribose) polymerases (PARP enzymes). May play a role in the regulation of seed germination potential. {ECO:0000269|PubMed:17587307}. PATHWAY: Cofactor biosynthesis; nicotinate biosynthesis; nicotinate from nicotinamide: step 1/1. {ECO:0000305}. ARA:AT5G23220-MONOMER; 3.5.1.19 22230,22318 Nicotinamidase 3 (AtNIC3) (EC 3.5.1.19) (Nicotinamide deamidase 3),Nicotinamidase 2 (AtNIC2) (EC 3.5.1.19) (Nicotinamide deamidase 2) nicotinamidase activity [GO:0008936]; pyridine nucleotide biosynthetic process [GO:0019363],nicotinamidase activity [GO:0008936]; NAD metabolic process [GO:0019674]; pyridine nucleotide biosynthetic process [GO:0019363] DEVELOPMENTAL STAGE: Expressed during seed germination. {ECO:0000269|PubMed:17587307}. locus:2166948;,locus:2166958; AT5G23220,AT5G23230 Isochorismatase family OSJNBa0038O10.9 protein (Os04g0525800 protein) Q7XKJ8 Q7XKJ8_ORYSJ Os04g0525800 OsJ_15523 OSJNBa0038O10.9 OSNPB_040525800 ENOG411DVV0 ABCG15,ABCG12 Q8RWI9,Q9C8K2,Q9LJC4 AB15G_ARATH,AB12G_ARATH,Q9LJC4_ARATH ABC transporter G family member 15 (ABC transporter ABCG.15) (AtABCG15) (White-brown complex homolog protein 15) (AtWBC15) (White-brown complex homolog protein 22) (AtWBC22),ABC transporter G family member 12 (ABC transporter ABCG.12) (AtABCG12) (Protein ECERIFERUM 5) (White-brown complex homolog protein 12) (AtWBC12),ABC transporter-like protein (At3g21080) (Uncharacterized protein At3g21080/MSA6_12) DISRUPTION PHENOTYPE: Abnormal cuticle and unusual lipidic cytoplasmatic inclusions in epidermal cells,. {ECO:0000269|PubMed:17951461}. Glossy, bright green inflorescence stems; Cytoplasm protrudes into vacuoles-A. Samuels-2004 FUNCTION: Involved in the secretion of cuticular wax from epidermal cells to the cuticle. {ECO:0000269|PubMed:11336252, ECO:0000269|PubMed:15499022, ECO:0000269|PubMed:17951461}. R-ATH-1369062; 77237,76451,28970 ABC transporter G family member 15 (ABC transporter ABCG.15) (AtABCG15) (White-brown complex homolog protein 15) (AtWBC15) (White-brown complex homolog protein 22) (AtWBC22),ABC transporter G family member 12 (ABC transporter ABCG.12) (AtABCG12) (Protein ECERIFERUM 5) (White-brown complex homolog protein 12) (AtWBC12),ABC transporter-like protein (At3g21080) (Uncharacterized protein At3g21080/MSA6_12) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; response to karrikin [GO:0080167],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; lipid transport [GO:0006869]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; wax biosynthetic process [GO:0010025],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Exclusively and constitutively expressed in epidermal cells. {ECO:0000269|PubMed:15499022}. locus:2092960;,locus:2033899;,locus:2092945; AT3G21090,AT1G51500,AT3G21080 ABC transporter G family member Os05g0222200 protein (Putative ATP-dependent transmembrane transporter) Q75HT8 Q75HT8_ORYSJ OSJNBb0043H23.11 Os05g0222200 B1003C08.13 OJ1532_D06.1 OSNPB_050222200 ENOG411EAS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E0CZ SULTR3;1,SULTR3:1 Q9SV13,A0A1I9LNF9 SUT31_ARATH,A0A1I9LNF9_ARATH Sulfate transporter 3.1 (AST12) (AtST1),Sulfate transporter 31 FUNCTION: H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation. R-ATH-174362;R-ATH-427601; 72748,77938 Sulfate transporter 3.1 (AST12) (AtST1),Sulfate transporter 31 chloroplast [GO:0009507]; integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293]; sulfate transport [GO:0008272],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; secondary active sulfate transmembrane transporter activity [GO:0008271] TISSUE SPECIFICITY: Expressed only in leaves. locus:3437527; AT3G51895 sulfate transporter Os10g0420400 protein (Fragment),Os03g0161200 protein (Fragment) Q0IXM8,A0A0P0VTN1 Q0IXM8_ORYSJ,A0A0P0VTN1_ORYSJ Os10g0420400 OSNPB_100420400,Os03g0161200 OSNPB_030161200 ENOG411E0CX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0639100 protein A3A9F2 A3A9F2_ORYSJ Os02g0639100 OsJ_07669 OSNPB_020639100 ENOG411E0CY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E0CR PAP22 Q8S340 PPA22_ARATH Purple acid phosphatase 22 (EC 3.1.3.2) ARA:AT3G52820-MONOMER; 3.1.3.2 49357 Purple acid phosphatase 22 (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2083238; AT3G52820 Purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2),Purple acid phosphatase (EC 3.1.3.2) (Fragment) Q7XVG3,A0A0P0XZH6,A0A0P0Y702 Q7XVG3_ORYSJ,A0A0P0XZH6_ORYSJ,A0A0P0Y702_ORYSJ Os04g0410600 OsJ_14714 OSJNBa0073L04.3 OSNPB_040410600,Os11g0151700 OSNPB_110151700,Os12g0150700 OSNPB_120150700 ENOG411E0CS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPPc Os06g0222900 protein (Putative inositol 1,4,5-trisphosphate 5-phosphatase) (cDNA clone:002-148-A06, full insert sequence) Q67UJ6 Q67UJ6_ORYSJ Os06g0222900 Os06g0222900 OSNPB_060222900 P0638H11.6 ENOG411E0CP F8F6_200 Q93XY4,A0A1P8BEG2 Q93XY4_ARATH,A0A1P8BEG2_ARATH FK506-binding-like protein (Uncharacterized protein At5g03990; F8F6_200),FK506-binding-like protein 34878,27225 FK506-binding-like protein (Uncharacterized protein At5g03990; F8F6_200),FK506-binding-like protein locus:2150570; AT5G03990 NA Os01g0801200 protein (cDNA clone:002-107-C01, full insert sequence) (cDNA clone:J033073E03, full insert sequence) Q5VQJ7 Q5VQJ7_ORYSJ Os01g0801200 OsJ_03776 OSNPB_010801200 P0003D09.17 P0691E06.49 ENOG411E0CQ Q9SHJ8 HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 (EC 3.1.2.-) ARA:AT1G06550-MONOMER; Metabolic pathways (01100),beta-Alanine metabolism (00410),Propanoate metabolism (00640),Valine, leucine and isoleucine degradation (00280) 3.1.2.- 43257 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 (EC 3.1.2.-) 3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860]; response to karrikin [GO:0080167] locus:2009180; AT1G06550 3-hydroxyisobutyryl-CoA hydrolase-like protein Os01g0752200 protein (Putative enoyl-CoA-hydratase) (cDNA clone:J023019I11, full insert sequence) Q5JMX9 Q5JMX9_ORYSJ Os01g0752200 OSNPB_010752200 P0046E05.36 P0435B05.17 ENOG411E0CV Q9ZPH4 DES1L_ARATH Sphingolipid delta(4)-desaturase DES1-like (EC 1.14.19.17) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18978071}. FUNCTION: Sphingolipid-delta-4-desaturase required for the biosynthesis of delta-4-unsaturated sphingolipids and derivatives. May be required for the biosynthesis of glucosylceramides. {ECO:0000269|PubMed:18978071}. ARA:AT4G04930-MONOMER;MetaCyc:AT4G04930-MONOMER; R-ATH-1660661;R-ATH-6798695; 1.14.19.17 38507 Sphingolipid delta(4)-desaturase DES1-like (EC 1.14.19.17) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; sphingolipid delta-4 desaturase activity [GO:0042284]; ceramide biosynthetic process [GO:0046513]; sphingolipid biosynthetic process [GO:0030148] TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:18978071}. locus:2135388; AT4G04930 sphingolipid Sphingolipid delta(4)-desaturase DES1-like (EC 1.14.19.17) Q6H5U3 DES1L_ORYSJ Os02g0639600 LOC_Os02g42660 OsJ_07673 OSJNBa0014E22.44 P0010C01.20 FUNCTION: Sphingolipid-delta-4-desaturase required for the biosynthesis of delta-4-unsaturated sphingolipids and derivatives. {ECO:0000250}. ENOG411E0CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain C2 domain-containing protein-like (Os01g0242600 protein) (cDNA clone:J013000N23, full insert sequence) (cDNA clone:J013116N03, full insert sequence) Q5NA77 Q5NA77_ORYSJ Os01g0242600 Os01g0242600 B1066G12.17 OsJ_01070 OSNPB_010242600 ENOG411E0CT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os02g0221900 protein (cDNA clone:J033136E09, full insert sequence),Os02g0221900 protein (Putative thromboxane-A synthase) Q0E2P9,Q6YVG7 Q0E2P9_ORYSJ,Q6YVG7_ORYSJ Os02g0221900 Os02g0221900 OSNPB_020221900,P0758B01.6-2 B1131G07.28-2 Os02g0221900 OSNPB_020221900 ENOG411E0CJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E0CK AHL16 Q9SJG4 AHL16_ARATH AT-hook motif nuclear-localized protein 16 (Protein TRANSPOSABLE ELEMENT SILENCING VIA AT-HOOK) (Protein TEK) DISRUPTION PHENOTYPE: Abnormal pollen wall with the absence of the nexine and intine layers causing microspore abortion and male sterility. {ECO:0000269|PubMed:24804694}. FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (PubMed:25336567). Encodes a nuclear matrix protein that acts in the maintenance of genomic integrity by silencing TEs and repeat-containing genes through epigenetic machinery. Acts as a chromatin remodeling factor that modifies the architecture of FLC and FWA chromatin by modulating both H3 acetylation and methylation leading to the regulation of FLC and FWA expression (PubMed:23394836, PubMed:23836195). Negatively regulates floral repressors including MAF4 and MAF5 (PubMed:23733063). Plays a transcription activation role in anther development. Regulates the expression of arabinogalactan proteins (AGPs) involved in the formation of the nexine layer of the pollen wall (PubMed:25336567, PubMed:24804694). Binds AGP6, AGP11, AGP23 and AGP40 promoters (PubMed:25336567). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:23394836, ECO:0000269|PubMed:23733063, ECO:0000269|PubMed:23836195, ECO:0000269|PubMed:24804694, ECO:0000269|PubMed:25336567}. MISCELLANEOUS: AHL16/TEK knockdown results in late flowering phenotype. {ECO:0000269|PubMed:23394836}. 27004 AT-hook motif nuclear-localized protein 16 (Protein TRANSPOSABLE ELEMENT SILENCING VIA AT-HOOK) (Protein TEK) nucleus [GO:0005634]; AT DNA binding [GO:0003680]; chromatin DNA binding [GO:0031490]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of histone acetylation [GO:0035067]; negative regulation of transposition [GO:0010529]; pollen wall assembly [GO:0010208]; positive regulation of histone H3-K9 dimethylation [GO:1900111]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Expressed in tapetum during the tetrad stage. {ECO:0000269|PubMed:24804694}. TISSUE SPECIFICITY: Preferentially expressed in the inflorescence meristem and young floral buds, as well as in seedling-stage vegetative meristems (PubMed:23394836). Widely expressed in flowers, roots and stems, with relatively low expression in leaves (PubMed:24804694). {ECO:0000269|PubMed:23394836, ECO:0000269|PubMed:24804694}. locus:2045585; AT2G42940 DNA-binding protein ESCAROLA-like NA NA NA NA NA NA NA ENOG411E0CH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport Os01g0198900 protein (cDNA clone:001-022-B09, full insert sequence) (cDNA clone:J023088J12, full insert sequence),Os05g0201700 protein,Os12g0529500 protein Q8S2Q8,Q6L4Q2,A0A0P0YAR9 Q8S2Q8_ORYSJ,Q6L4Q2_ORYSJ,A0A0P0YAR9_ORYSJ B1046G12.28 Os01g0198900 OSNPB_010198900,P0708D12.10 Os05g0201700 OSNPB_050201700,Os12g0529500 OSNPB_120529500 ENOG411E0CI SAG101 Q4F883,A8MS15 SG101_ARATH,A8MS15_ARATH Senescence-associated carboxylesterase 101 (EC 3.1.1.1),Senescence-associated gene 101 DISRUPTION PHENOTYPE: Delayed onset of leaf senescence (about 4 days later). Reduced resistance to both virulent and avirulent pathogens (Pseudomonas syringae pv. tomato and Hyaloperonospora parasitica). {ECO:0000269|PubMed:11971136}. FUNCTION: Acyl hydrolase that triggers the leaf senescence onset. Can use triolein as substrate to produce oleic acids.; FUNCTION: Involved in the EDS1-dependent intrinsic and indispensable resistance signaling pathway; together with PAD4, required for programmed cell death triggered by RPS4 in response to avirulent pathogens (e.g. P.syringae pv. tomato strain DC3000 and H.parasitica isolates CALA2 and EMWA1) and in restricting the growth of virulent pathogens (e.g. H.parasitica isolates NOCO2 and P.syringae pv. tomato strain DC3000 avrRps4). Contributes in reinforcing the immune response around hypersensitive response foci (PubMed:21434927). Regulates the nuclear localization of EDS1. Essential for the RPP8/HRT-mediated resistance to the turnip crinkle virus (TCV). Involved in the post-invasion resistance to P.pachyrhizi in the mesophyll. {ECO:0000269|PubMed:21434927, ECO:0000269|PubMed:22072959}. ARA:AT5G14930-MONOMER; 3.1.1.1 62066,26210 Senescence-associated carboxylesterase 101 (EC 3.1.1.1),Senescence-associated gene 101 cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; carboxylic ester hydrolase activity [GO:0052689]; aging [GO:0007568]; defense response [GO:0006952]; lipid catabolic process [GO:0016042]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of defense response to oomycetes [GO:1902290]; positive regulation of defense response to virus by host [GO:0002230]; positive regulation of leaf senescence [GO:1900057],hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] DEVELOPMENTAL STAGE: Not expressed until the onset of senescence in leaves. {ECO:0000269|PubMed:11971136, ECO:0000269|PubMed:19143996}. TISSUE SPECIFICITY: Expressed in senescing leaves. {ECO:0000269|PubMed:11971136}. locus:2147825; AT5G14930 Lipase (class 3) NA NA NA NA NA NA NA ENOG411E0CN Q9LIM7,A0A1I9LNC9,F4IRI1 Q9LIM7_ARATH,A0A1I9LNC9_ARATH,F4IRI1_ARATH Transducin family protein / WD-40 repeat family protein,Transducin/WD40 repeat-like superfamily protein R-ATH-6791226; 84415,72204,88012 Transducin family protein / WD-40 repeat family protein,Transducin/WD40 repeat-like superfamily protein locus:2079266;,locus:2044480; AT3G26480,AT2G18900 WD repeat-containing protein Os12g0609800 protein (Transducin family protein, putative, expressed),Os12g0609800 protein (Fragment) Q2QMC2,A0A0P0YCA0 Q2QMC2_ORYSJ,A0A0P0YCA0_ORYSJ Os12g0609800 LOC_Os12g41620 Os12g0609800 OSNPB_120609800,Os12g0609800 OSNPB_120609800 ENOG411E0CM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycolipid transfer protein (GLTP) Os07g0445800 protein Q8LH92 Q8LH92_ORYSJ P0030H06.106 Os07g0445800 OSNPB_070445800 ENOG411E0CB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0335700 protein (Putative stripe rust resistance protein Yr10) (cDNA clone:J013146B15, full insert sequence) Q943S7 Q943S7_ORYSJ Os01g0335700 Os01g0335700 B1158F07.35 OSNPB_010335700 ENOG411E0CC Q9FJX7,A0A1P8BCM1 Q9FJX7_ARATH,A0A1P8BCM1_ARATH Gb|AAD30228.1 (O-Glycosyl hydrolases family 17 protein),O-Glycosyl hydrolases family 17 protein ARA:AT5G67460-MONOMER; 41996,41800 Gb|AAD30228.1 (O-Glycosyl hydrolases family 17 protein),O-Glycosyl hydrolases family 17 protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2158571; AT5G67460 glycosyl hydrolase family protein 17 Expressed protein (Os10g0347000 protein) (cDNA clone:J033046G12, full insert sequence) Q7G3M2 Q7G3M2_ORYSJ Os10g0347000 LOC_Os10g20650 Os10g0347000 OSNPB_100347000 ENOG411E0CA MTG10.5 Q8RWW3 Q8RWW3_ARATH Diphthamide synthesis DPH2 family protein (Uncharacterized protein At5g62030) PATHWAY: Protein modification; peptidyl-diphthamide biosynthesis. {ECO:0000256|SAAS:SAAS00738906}. 50341 Diphthamide synthesis DPH2 family protein (Uncharacterized protein At5g62030) peptidyl-diphthamide biosynthetic process from peptidyl-histidine [GO:0017183] locus:2174048; AT5G62030 diphthamide biosynthesis protein 1 Diphthamide synthesis DPH2-like (Os02g0815600 protein) (cDNA clone:001-027-F01, full insert sequence) (cDNA clone:J013135E01, full insert sequence) Q6K6C0 Q6K6C0_ORYSJ Os02g0815600 OJ1293_E04.32 OSNPB_020815600 P0643F09.5 ENOG411E0CF UEV1C Q9SJ44 UEV1C_ARATH Ubiquitin-conjugating enzyme E2 variant 1C (Ubc enzyme variant 1C) (Protein MMS ZWEI HOMOLOG 3) FUNCTION: Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. May play a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. {ECO:0000269|PubMed:17586653, ECO:0000269|PubMed:18178771}. R-ATH-446652;R-ATH-5693565; 16481 Ubiquitin-conjugating enzyme E2 variant 1C (Ubc enzyme variant 1C) (Protein MMS ZWEI HOMOLOG 3) cytosol [GO:0005829]; nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; postreplication repair [GO:0006301]; protein K63-linked ubiquitination [GO:0070534] DEVELOPMENTAL STAGE: Detected in seedlings 6 hours post-germination, but not 2 days post-germination. {ECO:0000269|PubMed:18178771}. TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, stems and flowers, but not in pollen. {ECO:0000269|PubMed:18178771}. locus:2039245; AT2G36060 Ubiquitin-conjugating enzyme Os09g0297100 protein (Putative ubiquitin-conjugating enzyme family protein) (cDNA clone:001-121-C07, full insert sequence) (cDNA clone:J033054B21, full insert sequence) Q69TB0 Q69TB0_ORYSJ Os09g0297100 Os09g0297100 OJ1381_H04.1 OsJ_28746 OSNPB_090297100 P0592C05.25 ENOG411E0CG ATL24 Q8LBA0 NIPL2_ARATH NEP1-interacting protein-like 2 (RING-H2 finger protein ATL24) FUNCTION: May be involved in the early steps of the plant defense signaling pathway. Does not display E3 catalytic activity. {ECO:0000269|PubMed:16339806}. 24262 NEP1-interacting protein-like 2 (RING-H2 finger protein ATL24) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to chitin [GO:0010200] locus:2019110; AT1G74410 RING Os02g0743700 protein (Putative NEP1-interacting protein) (cDNA clone:J023049J18, full insert sequence) Q6Z2U8 Q6Z2U8_ORYSJ OJ1734_E02.21-2 Os02g0743700 OSNPB_020743700 ENOG411E0CD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os12g0126100 protein,Os11g0129500 protein A0A0N7KTI3,A0A0P0XYH4 A0A0N7KTI3_ORYSJ,A0A0P0XYH4_ORYSJ Os12g0126100 OSNPB_120126100,Os11g0129500 OSNPB_110129500 ENOG411E0CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0C8 NTL8 Q9XIN7 NAC40_ARATH NAC domain-containing protein 40 (ANAC040) (Protein NTM1-like 8) DISRUPTION PHENOTYPE: In ntl8-1, no discernible phenotypic changes except slight differences in lateral root growth and flowering time, as well as reduced lateral root growth rate. Insensitive to high salt. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704545}. Reduced growth of lateral roots.Delayed flowering in long and short days. Short lateral roots-C. Park-2007 FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. 38184 NAC domain-containing protein 40 (ANAC040) (Protein NTM1-like 8) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to salt stress [GO:0071472]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; membrane protein proteolysis [GO:0033619]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; photoperiodism, flowering [GO:0048573]; response to gibberellin [GO:0009739]; response to salt stress [GO:0009651]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}. TISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378}. locus:2039600; AT2G27300 NAC domain-containing protein NA NA NA NA NA NA NA ENOG411E0C9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0C2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 16 Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Q7XNY6 Q7XNY6_ORYSJ Os04g0604900 Os04g0604900 OSJNBb0015N08.5 OSNPB_040604900 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411E0C3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Chitinase III-like protein (Os07g0500300 protein) (cDNA clone:001-042-D08, full insert sequence) (cDNA clone:J013047I20, full insert sequence) Q69RN2 Q69RN2_ORYSJ Os07g0500300 Os07g0500300 OsJ_24353 OSJNBb0055I24.131 OSNPB_070500300 ENOG411E0C0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os01g0118700 protein (Putative HGA6) (cDNA clone:J023054L18, full insert sequence) Q9FTE2 Q9FTE2_ORYSJ Os01g0118700 Os01g0118700 OsJ_00164 OSNPB_010118700 P0494A10.26 P0698A04.10 ENOG411E0C6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phenylalanine ammonialyase Phenylalanine ammonia-lyase (EC 4.3.1.24) Q7X720 Q7X720_ORYSJ Os04g0518100 OSJNBa0073E02.14 OSJNBb0061C13.1 OSNPB_040518100 ENOG411E0C7 KAN2 Q9C616,A0A1P8ATI2,A0A1P8ATH7 KAN2_ARATH,A0A1P8ATI2_ARATH,A0A1P8ATH7_ARATH Probable transcription factor KAN2 (Protein KANADI 2),Homeodomain-like superfamily protein About nine-tenths of the mutants exhibited abaxialized vasculature. The exclusively adaxialized vasculature observed in kan1 kan2 petioles was not detected in bop1 bop2 kan1 kan2 petioles. The radialized portion of bop1 bop2 kan1 kan2 leaves showed various kinds of organ polarity defects. The vascular bundles of nearly half of the leaves (44.0%) consisted of phloem surrounded by xylem while one-third (36.0%) displayed xylem surrounded by phloem and a small percentage (16.0%) had a mixture of both types of vasculature.,Quadruple mutant plants developed narrow leaves with ectopic blade outgrowth along the petioles like bop1 bop2 leaves as well as ectopic outgrowths on their abaxial lamina like kan1 kan2 leaves. However all of the bop1 bop2 kan1 kan2 leaves also showed extended radialized petiole development that was not observed in either parental genotype.,bop1 bop2 kan1 kan2 stems had a decreased ratio of adaxialized vascular phenotypes compared with kan1 kan2 stems. Similar to what was observed in petioles 6.7% of bop1 bop2 kan1 kan2 stems exhibited an abaxialized phenotype of xylem surrounded by phloem while others (13.3%) had both types of vasculature in a single stem.,Similar to kan1 kan2 double mutant. However the ovules have a novel phenotype forming a single amorphous structure in place of both integuments.,All kan1 kan2 stem vascular bundles displayed phloem surrounded by xylem indicating adaxialized polarity.,Cotyledons are narrow cup-shaped and point upward. Leaves are narrow dark green and develop ectopic outgrowths on their abaxial side only. Four to six stipules rather than two develop at the base of each leaf surrounding its entire circumference. Stems fail to elongate upon flowering. Floral organ morphology is highly abnormal. Mature ovules have reduced outer integuments. Aberrant positioning of cell types primarily along the adaxial/abaxial lateral organ axis.,Double mutant plants have narrow leaves and developed ectopic outgrowths on their abaxial lamina.,External structures of the carpel are largely absent. Ovules arise from a surface or column of tissue at the center of the flower. The inner integuments of these ovules are normal but the asymmetrical outer integument is now a nearly symmetrical and relatively amorphous collar of tissue.,The vasculature in more than half (55.9%) of kan1 kan2 leaf petioles exhibited a pattern of phloem surrounded by xylem representing an adaxialized phenotype. However very surprisingly 17.6% of kan1 kan2 leaf petioles had abaxialized vasculature or a mixture of adaxialized and abaxialized vasculature. FUNCTION: Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. MISCELLANEOUS: Plants overexpressing KAN2 develop elongated and pointed cotyledons, and do not produced subsequent leaves, resulting in seedling lethality. 43841,15611,41799 Probable transcription factor KAN2 (Protein KANADI 2),Homeodomain-like superfamily protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; carpel development [GO:0048440]; cell differentiation [GO:0030154]; plant ovule development [GO:0048481]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}. locus:2028346; AT1G32240 Transcription factor Os08g0160300 protein,Os02g0696900 protein Q0J7V4,A0A0P0VNC2 Q0J7V4_ORYSJ,A0A0P0VNC2_ORYSJ Os08g0160300 Os08g0160300 OSNPB_080160300,Os02g0696900 OSNPB_020696900 ENOG411E0C4 T1B9.27 Q9SFT8 Q9SFT8_ARATH At3g07080 (EamA-like transporter family) (Putative integral membrane protein) 47682 At3g07080 (EamA-like transporter family) (Putative integral membrane protein) integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2098575; AT3G07080 solute carrier family 35 member NA NA NA NA NA NA NA ENOG411E0C5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-dependent protein kinase Calcium-dependent protein kinase 7 (OsCDPK7) (OsCPK7) (EC 2.7.11.1) (Calcium-dependent protein kinase OsCDPK1) (Calcium-dependent protein kinase OsCDPK13) (Calcium-dependent protein kinase isoform 11) (OsCPKII),Os04g0503200 protein P53684,A0A0P0WCG4 CDPK7_ORYSJ,A0A0P0WCG4_ORYSJ CPK7 CDPK1 CDPK12 CPK11 Os03g0128700 LOC_Os03g03660 OJ1528D07.2,Os04g0503200 OSNPB_040503200 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). May be a signaling component in the response to gibberellin and cold stress (PubMed:15604699). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:15604699}. MISCELLANEOUS: Plants over-expressing CPK7 show increased recovery rates after cold stress. {ECO:0000269|PubMed:15604699}. ENOG411E5D3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0395000 protein A0A0P0XMB7 A0A0P0XMB7_ORYSJ Os09g0395000 OSNPB_090395000 ENOG411EGP7 A0A1P8ANL9,F4I3J1 A0A1P8ANL9_ARATH,F4I3J1_ARATH Cysteine-rich/transmembrane domain protein B 7812,6419 Cysteine-rich/transmembrane domain protein B integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006] locus:2205245; AT1G56060 NA NA NA NA NA NA NA NA ENOG411DSG2 ASP2,ASP3 P46645,P46644 AAT2_ARATH,AAT3_ARATH Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A),Aspartate aminotransferase 3, chloroplastic (EC 2.6.1.1) (Protein YELLOW-LEAF-SPECIFIC GENE 4) (Transaminase A) DISRUPTION PHENOTYPE: No visible phenotype, but slight modification of the amino acid composition. Growth defect, when grown in vitro. {ECO:0000269|PubMed:12068109, ECO:0000269|PubMed:21511809, ECO:0000269|PubMed:21676488}. Reduced aspartate transport in the phloem-G. Coruzzi-1998 FUNCTION: Important for the metabolism of amino acids and Krebs-cycle related organic acids. Involved in plant nitrogen metabolism of Asp and Asp-derived amino acids and in the synthesis of Asp/Asn for seed storage (PubMed:12068109). May be involved in the assessment of the pyridoxal phosphate levels in the cell (PubMed:21511809). {ECO:0000269|PubMed:12068109, ECO:0000269|PubMed:7894512, ECO:0000269|PubMed:9535706, ECO:0000269|PubMed:9611168, ECO:0000303|PubMed:21511809}.,FUNCTION: Amino acid aminotransferase important for the metabolism of amino acids and Krebs-cycle related organic acids. No activity with D-Asp or D-Ala as amino donors. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. {ECO:0000269|PubMed:18318836, ECO:0000269|PubMed:7894512}. MISCELLANEOUS: Several mutations in ASP2, but not all, suppress the root UV-B sensitive (rus) phenotype. A loss of ASP2 activity is not sufficient for this suppression. {ECO:0000269|PubMed:21511809}.; MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes.,MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes. 2.6.1.1 44267,48954 Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A),Aspartate aminotransferase 3, chloroplastic (EC 2.6.1.1) (Protein YELLOW-LEAF-SPECIFIC GENE 4) (Transaminase A) cell wall [GO:0005618]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; 2-oxoglutarate metabolic process [GO:0006103]; aspartate metabolic process [GO:0006531]; biosynthetic process [GO:0009058]; glutamate metabolic process [GO:0006536]; nitrogen compound metabolic process [GO:0006807],chloroplast [GO:0009507]; membrane [GO:0016020]; peroxisome [GO:0005777]; plastid [GO:0009536]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; 2-oxoglutarate metabolic process [GO:0006103]; aspartate metabolic process [GO:0006531]; biosynthetic process [GO:0009058]; glutamate metabolic process [GO:0006536]; leaf senescence [GO:0010150] DEVELOPMENTAL STAGE: Highly expressed during early germination. {ECO:0000269|PubMed:21511809}.,DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571}. TISSUE SPECIFICITY: Expressed in roots, cauline leaves, flowers, hypocotyl epidermis and root hair cells. {ECO:0000269|PubMed:11230571, ECO:0000269|PubMed:14754918}. locus:2180826;,locus:2144226; AT5G19550,AT5G11520 Aspartate aminotransferase Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A),Aspartate aminotransferase (EC 2.6.1.1) P37833,Q0JJ47 AATC_ORYSJ,Q0JJ47_ORYSJ Os01g0760600 LOC_Os01g55540 P0460E08.21 P0512C01.10,Os01g0760600 Os01g0760600 OSNPB_010760600 FUNCTION: Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes.,MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes. {ECO:0000256|RuleBase:RU000480}. ENOG411DSG0 WTF1 A0MFS5 A0MFS5_ARATH Ubiquitin carboxyl-terminal hydrolase family protein FUNCTION: RNA-binding protein involved in group II intron splicing. Binds specific group II introns and promotes their splicing. Functions in the context of a heterodimer with the ribonuclease III domain-containing protein RNC1. {ECO:0000250|UniProtKB:B6TTV8}. 61233 Ubiquitin carboxyl-terminal hydrolase family protein hydrolase activity [GO:0016787] locus:4515103321; AT4G01037 Plant organelle RNA recognition domain Protein WHAT'S THIS FACTOR 1 homolog Q65XL5 WTF1_ORYSJ Os05g0571100 LOC_Os05g49610 OJ1735_C10.3 OsJ_19611 FUNCTION: RNA-binding protein involved in group II intron splicing. Binds specific group II introns and promotes their splicing. Functions in the context of a heterodimer with the ribonuclease III domain-containing protein RNC1. {ECO:0000250|UniProtKB:B6TTV8}. ENOG411DSG7 FCA O04425,F4JLR7 FCA_ARATH,F4JLR7_ARATH Flowering time control protein FCA In the absence of vernalization the double mutant flowered at the same time as the fca-1 single mutant.,Significant though not complete reduction in flowering.,Strong delay in flowering and vernalization response.,In the absence of vernalization this mutant flowered later than the fca-1 single mutant. Late flowering-C. Dean -1997 FUNCTION: Plays a major role in the promotion of the transition of the vegetative meristem to reproductive development. Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for RNA-mediated chromatin silencing of a range of loci in the genome. Cotranscriptionally recognizes aberrant RNA and marks it for silencing. Controls alternative cleavage and polyadenylation on pre-mRNAs and antisense RNAs. Acts redundantly with FPA to prevent the expression of distally polyadenylated antisense RNAs at the FLC locus. {ECO:0000269|PubMed:17916737, ECO:0000269|PubMed:20079695}. MISCELLANEOUS: While FCA requires both FY and FLD, FPA requires FLD but not FY to repress FLC. 81706,73584 Flowering time control protein FCA nucleus [GO:0005634]; RNA binding [GO:0003723]; cell differentiation [GO:0030154]; flower development [GO:0009908],RNA binding [GO:0003723] TISSUE SPECIFICITY: Constitutively expressed, but the negative feedback maintains the active isoform a low level throughout much of the plant, except in meristematic cells at a specific time in development. {ECO:0000269|PubMed:12805228}. AT4G16280 flowering time control protein FCA (FCA gamma protein) (Flowering time control protein FCA gamma-like) (Os09g0123200 protein),Os09g0123200 protein (Fragment) Q6K271,A0A0P0XKM4 Q6K271_ORYSJ,A0A0P0XKM4_ORYSJ P0415D04.46-1 FCA Os09g0123200 OSNPB_090123200,Os09g0123200 OSNPB_090123200 ENOG411DSG4 PBS1 Q9FE20 PBS1_ARATH Serine/threonine-protein kinase PBS1 (EC 2.7.11.1) (AvrPphB susceptible protein 1) DISRUPTION PHENOTYPE: Reduction in H(2)O(2) accumulation and callose deposits. {ECO:0000269|PubMed:20413097}. Susceptible to specific strains of Pseudomonas syringae-R. Innes-2001 FUNCTION: Protein kinase required for plant defense mechanism mediated by the disease resistance (R) protein RPS5. In case of infection by Pseudomonas syringae, AvrPphB triggers RPS5-mediated defense mechanism via the cleavage of PBS1. Both kinase activity and cleavage by avrPphB are independently required to trigger the RPS5-mediated resistance. Contributes to PAMP-triggered immunity (PTI) signaling and defense responses downstream of FLS2. {ECO:0000269|PubMed:11359614, ECO:0000269|PubMed:12947197, ECO:0000269|PubMed:17277084, ECO:0000269|PubMed:20413097, ECO:0000269|PubMed:22372664}. R-ATH-446652; 2.7.11.1 50384 Serine/threonine-protein kinase PBS1 (EC 2.7.11.1) (AvrPphB susceptible protein 1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; innate immune response [GO:0045087]; pattern recognition receptor signaling pathway [GO:0002221]; protein autophosphorylation [GO:0046777] locus:2179857; AT5G13160 serine threonine-protein kinase Os02g0513000 protein (cDNA clone:J023035D12, full insert sequence),Os04g0393900 protein Q6K603,A0A0P0W9R3 Q6K603_ORYSJ,A0A0P0W9R3_ORYSJ Os02g0513000 OJ1789_D08.20 OsJ_06888 OSNPB_020513000,Os04g0393900 OSNPB_040393900 ENOG411DSGJ F4IHC3,A0A1P8AV25,F4HUN4,F4HUN8 F4IHC3_ARATH,A0A1P8AV25_ARATH,F4HUN4_ARATH,F4HUN8_ARATH DNA repair DEAD helicase RAD3/XP-D subfamily protein,RAD3-like DNA-binding helicase protein R-ATH-5693616; 16506,142134,131616,127981 DNA repair DEAD helicase RAD3/XP-D subfamily protein,RAD3-like DNA-binding helicase protein helicase activity [GO:0004386],ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleobase-containing compound metabolic process [GO:0006139],mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleobase-containing compound metabolic process [GO:0006139],chloroplast [GO:0009507]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleobase-containing compound metabolic process [GO:0006139] locus:1006230139;,locus:2030497;,locus:2030412; AT2G05635,AT1G20720,AT1G20750 DEAD_2 Os09g0551800 protein A0A0P0XQZ3 A0A0P0XQZ3_ORYSJ Os09g0551800 OSNPB_090551800 ENOG411DSGK DCP2 Q8GW31 DCP2_ARATH mRNA-decapping enzyme subunit 2 (AtDCP2) (Protein DECAPPING 2) (EC 3.6.1.62) (M(7)GpppN-mRNA hydrolase DCP2) (Protein TRIDENT) DISRUPTION PHENOTYPE: Lethal phenotype at the seedling cotyledon stage that are small and chlorotic, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. Altered RNA decay. {ECO:0000269|PubMed:17158604, ECO:0000269|PubMed:17513503}. Among the embryos derived from a tdt-1 heterozygote 25% were clearly distinguishable by their misshapen cells (5 of 23). These embryos contained small dense cells in the SAM region; however they were not organized into distinct layers and they did not appear as a dome.,Null mutants of DCP1 DCP2 and VCS accumulate capped mRNAs with a reduced degradation rate. The homozygous progeny of these mutants also share a similar lethal phenotype at the seedling cotyledon stage with disorganized veins swollen root hairs and altered epidermal cell morphology.,The homozygous progeny does not form flower buds.,The homozygous progeny is seedling lethal showed arrested postembryonic development including cotyledon expansion development of vascular networks root elongation and shoot development.,The mutant produced no leaves short roots with short and swollen root hairs chlorotic cotyledons that accumulated anthocyanins around their margins and a short and swollen hypocotyl. In addition the cotyledon-hypocotyl junction was extremely fragile which caused cotyledons to frequently fall off even with gentle handling.,Vascular defects in tdt mutants were also similar to those of vcs-7 in that cotyledon secondary veins mostly failed to form closed loops.,Much greater leaf development in both vcs-1 and tdt MC4 when grown at 16°C whereas growth at 22 and 29°C resulted in progressively more severe defects in leaf development. However tdt MC4 showed less extensive leaf development than that shown by vcs-1. Although some details of the vcs and tdt phenotypes differed the major phenotypic defects were similar.,Produced leaf primordia.,3-day-old seedlings still showed disorganized cell layers and no leaf primordia.,The vascular transition is a region where the root-like vascular organization of the lower hypocotyl shifts to a shoot-like vascular organization. In tdt-1 mutants this region ranged from being devoid of detectable xylem to containing xylem but with poorly aligned veins. This defect showed incomplete penetrance but it was most prevalent when seedlings were germinated at higher temperatures.,Appears similar to the single mutants. Seedling lethal; Abnormal vasculature-Y. Watanabe-2007 FUNCTION: Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Essential for postembryonic development, especially during the formation of the shoot apical meristem (SAM). {ECO:0000269|PubMed:17158604, ECO:0000269|PubMed:17485080, ECO:0000269|PubMed:17513503, ECO:0000269|PubMed:18025047}. R-ATH-430039;R-ATH-450604; 3.6.1.62 42387 mRNA-decapping enzyme subunit 2 (AtDCP2) (Protein DECAPPING 2) (EC 3.6.1.62) (M(7)GpppN-mRNA hydrolase DCP2) (Protein TRIDENT) cytoplasm [GO:0005737]; P-body [GO:0000932]; ATP binding [GO:0005524]; m7G(5')pppN diphosphatase activity [GO:0050072]; magnesium ion binding [GO:0000287]; manganese ion binding [GO:0030145]; mRNA binding [GO:0003729]; deadenylation-dependent decapping of nuclear-transcribed mRNA [GO:0000290]; deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; modulation by virus of host morphology or physiology [GO:0019048]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397]; post-embryonic development [GO:0009791]; posttranscriptional gene silencing [GO:0016441]; primary shoot apical meristem specification [GO:0010072] DEVELOPMENTAL STAGE: Gradually accumulates upon germination. {ECO:0000269|PubMed:19855049}. TISSUE SPECIFICITY: Expressed in seedlings, mostly in root tips, root hairs, and the vascular system. Also present in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:17158604}. locus:2173174; AT5G13570 decapping Decapping protein 2-like (Os02g0805900 protein),Os02g0805900 protein (Fragment) Q6K837,A0A0P0VR12 Q6K837_ORYSJ,A0A0P0VR12_ORYSJ Os02g0805900 Os02g0805900 OJ1111_C07.4 OJ1548_F12.26 OSNPB_020805900,Os02g0805900 OSNPB_020805900 ENOG411DSGM ABO6 F4HYJ7,Q9FF84,F4HYJ6 DEXH3_ARATH,Q9FF84_ARATH,F4HYJ6_ARATH DExH-box ATP-dependent RNA helicase DExH3 (EC 3.6.4.13),ATP-dependent RNA helicase A-like protein (DEA(D/H)-box RNA helicase family protein),DEA(D/H)-box RNA helicase family protein R-ATH-3134963; 3.6.4.13 134253,130831,135432 DExH-box ATP-dependent RNA helicase DExH3 (EC 3.6.4.13),ATP-dependent RNA helicase A-like protein (DEA(D/H)-box RNA helicase family protein),DEA(D/H)-box RNA helicase family protein ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:504954904;,locus:2008144; AT1G48650,AT5G04895 ATP-dependent RNA helicase Os03g0748800 protein,Os01g0118100 protein (Fragment) A0A0P0W309,A0A0P0UXU4 A0A0P0W309_ORYSJ,A0A0P0UXU4_ORYSJ Os03g0748800 OSNPB_030748800,Os01g0118100 OSNPB_010118100 ENOG411DSGB Q8LG53,Q56WD3 UN932_ARATH,UN931_ARATH UNC93-like protein 2,UNC93-like protein 1 49970 UNC93-like protein 2,UNC93-like protein 1 integral component of membrane [GO:0016021] locus:2194030;,locus:505006129; AT1G18010,AT1G18000 UNC93-like protein Os04g0105400 protein A0A0P0W5Y3 A0A0P0W5Y3_ORYSJ Os04g0105400 OSNPB_040105400 ENOG411DSGG Q9SHS2 Q9SHS2_ARATH Glucose-inhibited division family A protein (Similar to glucose inhibited division protein A from prokaryotes) 80757 Glucose-inhibited division family A protein (Similar to glucose inhibited division protein A from prokaryotes) cytosol [GO:0005829]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity [GO:0016491]; tRNA methylation [GO:0030488]; tRNA wobble uridine modification [GO:0002098] locus:2060326; AT2G13440 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Os01g0960300 protein (Putative glucose inhibited division protein A),Os01g0960300 protein (Fragment) Q5JN40,A0A0P0VD36 Q5JN40_ORYSJ,A0A0P0VD36_ORYSJ Os01g0960300 OsJ_04841 OSNPB_010960300 P0401G10.24,Os01g0960300 OSNPB_010960300 ENOG411DSGX EP3 Q9M2U5 CHI5_ARATH Endochitinase EP3 (EC 3.2.1.14) (Chitinase class IV) (AtchitIV) (Protein HOMOLOG OF CARROT EP3-3 CHITINASE) (AtEP3) FUNCTION: Probably involved in hypersensitive reaction upon Xanthomonas campestris infection. {ECO:0000269|PubMed:9426222}. ARA:AT3G54420-MONOMER; 3.2.1.14 29436 Endochitinase EP3 (EC 3.2.1.14) (Chitinase class IV) (AtchitIV) (Protein HOMOLOG OF CARROT EP3-3 CHITINASE) (AtEP3) cell wall [GO:0005618]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response [GO:0006952]; polysaccharide catabolic process [GO:0000272]; response to bacterium [GO:0009617]; response to wounding [GO:0009611]; somatic embryogenesis [GO:0010262] DEVELOPMENTAL STAGE: Expressed during somatic embryogenesis in nursing cells surrounding the embryos but not in embryos. Accumulates in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments. In adult plants, present in hydathodes, stipules, root epidermis and emerging root hairs. {ECO:0000269|PubMed:11525512}. TISSUE SPECIFICITY: Expressed in cells surrounding embryos, stems, seedlings, pollen, roots, shoots, inflorescence, flowers, siliques and leaves (PubMed:11525512, PubMed:19420714). Present in seedpods and seed embryos, but not in roots, inflorescence stems, leaves and flowers (PubMed:9426222). {ECO:0000269|PubMed:11525512, ECO:0000269|PubMed:19420714, ECO:0000269|PubMed:9426222}. locus:2096159; AT3G54420 chitinase Chitinase 4 (EC 3.2.1.14) (OsChia2b) (Pathogenesis related (PR)-3 chitinase 4),Chitinase 5 (EC 3.2.1.14) (Class IV chitinase a) (OsChia4a) (Pathogenesis related (PR)-3 chitinase 5),Chitinase 6 (EC 3.2.1.14) (Pathogenesis related (PR)-3 chitinase 6),Os12g0238550 protein O04138,Q7Y1Z0,Q6K8R2,A0A0P0Y930 CHI4_ORYSJ,CHI5_ORYSJ,CHI6_ORYSJ,A0A0P0Y930_ORYSJ Cht4 Os04g0493400 LOC_Os04g41620 OsJ_15306 OSJNBb0091E11.8,Cht5 Os04g0494100 LOC_Os04g41680 OsJ_15308 OSJNBb0091E11.12,Cht6 Os02g0605900 LOC_Os02g39330 OJ1058_F07.19 OsJ_07447,Os12g0238550 OSNPB_120238550 FUNCTION: Hydrolyzes chitin and may function in reproductive organs during embryogenesis and seed maturation. {ECO:0000269|PubMed:12834284}.,FUNCTION: May function in reproductive organs during embryogenesis and seed maturation. ENOG411DSGY PSAL Q9SUI4,A0A1P8B6D0 PSAL_ARATH,A0A1P8B6D0_ARATH Photosystem I reaction center subunit XI, chloroplastic (PSI-L) (PSI subunit V),Photosystem I subunit l MetaCyc:MONOMER-1094; 23052,30441 Photosystem I reaction center subunit XI, chloroplastic (PSI-L) (PSI subunit V),Photosystem I subunit l chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I reaction center [GO:0009538]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979],integral component of membrane [GO:0016021]; photosystem I reaction center [GO:0009538]; photosynthesis [GO:0015979] locus:2135808; AT4G12800 Photosystem I reaction center subunit XI Os12g0420400 protein (Photosystem I reaction center subunit XI, chloroplast, putative, expressed) (cDNA clone:001-103-F07, full insert sequence) (cDNA clone:006-203-B01, full insert sequence) (cDNA clone:J023030F01, full insert sequence),Os12g0420400 protein Q2QSR5,A0A0P0Y9N3 Q2QSR5_ORYSJ,A0A0P0Y9N3_ORYSJ Os12g0420400 LOC_Os12g23200 Os12g0420400 OSNPB_120420400,Os12g0420400 OSNPB_120420400 ENOG411DSGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os09g0452800 protein (Putative aspartic proteinase nepenthesin I) (cDNA clone:001-205-D02, full insert sequence) Q67UZ9 Q67UZ9_ORYSJ Os09g0452800 Os09g0452800 OsJ_29597 OSNPB_090452800 P0488D02.16 ENOG411DSGQ FKBP43 F4J9Q6,A0A1I9LQ76 FKB43_ARATH,A0A1I9LQ76_ARATH Peptidyl-prolyl cis-trans isomerase FKBP43 (PPIase FKBP43) (EC 5.2.1.8) (FK506-binding protein 43) (AtFKBP43) (Immunophilin FKBP43) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 55178,41880 Peptidyl-prolyl cis-trans isomerase FKBP43 (PPIase FKBP43) (EC 5.2.1.8) (FK506-binding protein 43) (AtFKBP43) (Immunophilin FKBP43) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2092467; AT3G12340 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) A0A0N7KQB9,A0A0P0XJH1,A0A0P0XLH9 A0A0N7KQB9_ORYSJ,A0A0P0XJH1_ORYSJ,A0A0P0XLH9_ORYSJ Os09g0103800 OSNPB_090103800,Os09g0103900 OSNPB_090103900,Os09g0293900 OSNPB_090293900 ENOG411DSGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os10g0579400 protein (Fragment) A0A0P0XY97 A0A0P0XY97_ORYSJ Os10g0579400 OSNPB_100579400 ENOG411DSGW PPCS2,PPCS1 Q9LZM3,Q8GXR5,A0A1P8BFH8,A0A1P8BFF7,A0A1P8BFF9,A0A1P8BFI5,A0A1P8BFL0,A0A1P8BFH2 PPCS2_ARATH,PPCS1_ARATH,A0A1P8BFH8_ARATH,A0A1P8BFF7_ARATH,A0A1P8BFF9_ARATH,A0A1P8BFI5_ARATH,A0A1P8BFL0_ARATH,A0A1P8BFH2_ARATH Phosphopantothenate--cysteine ligase 2 (EC 6.3.2.5) (Phosphopantothenoylcysteine synthetase 2) (PPC synthetase 2),Phosphopantothenate--cysteine ligase 1 (EC 6.3.2.5) (AtCoaB) (Phosphopantothenoylcysteine synthetase 1) (PPC synthetase 1),Phosphopantothenate-cysteine ligase-like protein FUNCTION: Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. {ECO:0000250}.,FUNCTION: Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. {ECO:0000269|PubMed:12860978}. PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 2/5. ARA:AT5G02080-MONOMER; R-ATH-196783; 6.3.2.5 34824,35369,34794,24499,35742,31431,24395,25698 Phosphopantothenate--cysteine ligase 2 (EC 6.3.2.5) (Phosphopantothenoylcysteine synthetase 2) (PPC synthetase 2),Phosphopantothenate--cysteine ligase 1 (EC 6.3.2.5) (AtCoaB) (Phosphopantothenoylcysteine synthetase 1) (PPC synthetase 1),Phosphopantothenate-cysteine ligase-like protein phosphopantothenate--cysteine ligase activity [GO:0004632]; coenzyme A biosynthetic process [GO:0015937],ligase activity [GO:0016874],integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2034690; AT5G02080,AT1G12350 phosphopantothenate--cysteine ligase Phosphopantothenate--cysteine ligase 1 (EC 6.3.2.5) (Phosphopantothenoylcysteine synthetase 1) (PPC synthetase 1),Phosphopantothenate--cysteine ligase 2 (EC 6.3.2.5) (Phosphopantothenoylcysteine synthetase 2) (PPC synthetase 2),Os08g0176100 protein Q69S81,Q0J7N5,A0A0P0XCP7 PPCS1_ORYSJ,PPCS2_ORYSJ,A0A0P0XCP7_ORYSJ Os02g0575200 LOC_Os02g36550 OsJ_07236 P0703B01.18,Os08g0176100 LOC_Os08g07880 OJ1134_B10.16 OsJ_36371,Os08g0176100 OSNPB_080176100 FUNCTION: Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. {ECO:0000250}. ENOG411DSGT PHR1 Q9SB00,A0A1P8ARP1 PHR_ARATH,A0A1P8ARP1_ARATH Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (AtCPDII) (DNA photolyase) (Photoreactivating enzyme 1) (Protein UV RESISTANCE 2),Photolyase 1 DISRUPTION PHENOTYPE: No visible phenotype under white light, but inhibition of growth and leaf necrosis under white light and UV-B. Increasesd accumulation of CPDs under UV-B. {ECO:0000269|PubMed:11069284, ECO:0000269|PubMed:8990208, ECO:0000269|PubMed:9061951, ECO:0000269|PubMed:9750104}. Sensitive to UV-B light-R. Last-1997 FUNCTION: Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutylpyrimidine dimers (CPDs), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation. Required for plant survival in the presence of UV-B light. Not involved in the repair of (6-4) photoproducts. {ECO:0000269|PubMed:11069284, ECO:0000269|PubMed:19521716, ECO:0000269|PubMed:20227927, ECO:0000269|PubMed:8990208, ECO:0000269|PubMed:9061951, ECO:0000269|PubMed:9750104}. MISCELLANEOUS: Over-expression of PHR1 decreases CPDs accumulation during UV-B treatment. ARA:AT1G12370-MONOMER; 4.1.99.3; 4.1.99.3 57055,53408 Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (AtCPDII) (DNA photolyase) (Photoreactivating enzyme 1) (Protein UV RESISTANCE 2),Photolyase 1 nucleus [GO:0005634]; deoxyribodipyrimidine photo-lyase activity [GO:0003904]; DNA binding [GO:0003677]; DNA photolyase activity [GO:0003913]; nucleotide binding [GO:0000166]; photoreactive repair [GO:0000719]; UV protection [GO:0009650],lyase activity [GO:0016829] TISSUE SPECIFICITY: Highly expressed in flowers. Expressed in roots and stems. {ECO:0000269|PubMed:9061951}. locus:2034675; AT1G12370 photo-lyase Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (OsCPDII) (Photoreactivating enzyme),Os10g0167600 protein Q6F6A2,A0A0P0XSU0 PHR_ORYSJ,A0A0P0XSU0_ORYSJ PHR Os10g0167600 LOC_Os10g08580 OSJNAb0015J03.12,Os10g0167600 OSNPB_100167600 FUNCTION: Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutylpyrimidine dimers (CPDs), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation. Required for plant survival in the presence of UV-B light. Not involved in the repair of (6-4) photoproducts. {ECO:0000269|PubMed:12764611, ECO:0000269|PubMed:15965242, ECO:0000269|PubMed:17397507, ECO:0000269|PubMed:17895582, ECO:0000269|PubMed:18235036, ECO:0000269|PubMed:20227927}. MISCELLANEOUS: Over-expression of PHR decreases growth inhibition, leaf necrosis and CPDs accumulation under UV-B treatment. ENOG411DSGU F24I3.80 Q9M1J8 Q9M1J8_ARATH At3g57000 (Nucleolar essential protein-like protein) (Uncharacterized protein At3g57000) (Uncharacterized protein F24I3.80) R-ATH-6791226; 33830 At3g57000 (Nucleolar essential protein-like protein) (Uncharacterized protein At3g57000) (Uncharacterized protein F24I3.80) nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; rRNA (pseudouridine) methyltransferase activity [GO:0070037]; rRNA binding [GO:0019843]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; rRNA base methylation [GO:0070475] locus:2080645; AT3G57000 ribosomal RNA small subunit methyltransferase nep-1-like Os02g0290400 protein (Putative nucleolar essential protein) (cDNA clone:J033070F10, full insert sequence) Q6K882 Q6K882_ORYSJ Os02g0290400 Os02g0290400 OJ1086_G08.4 OJ1756_H07.60 OsJ_06314 OSNPB_020290400 ENOG411EHS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynamin GTPase effector domain Dynamin family protein, putative, expressed (Os03g0260000 protein) Q10NS9 Q10NS9_ORYSJ LOC_Os03g15420 Os03g0260000 OsJ_10209 OSNPB_030260000 ENOG411EEZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411EEZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEJM O49477,A0A1P8B3S0,A0A1P8B3V1 O49477_ARATH,A0A1P8B3S0_ARATH,A0A1P8B3V1_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein AT4g19590) (Uncharacterized protein F24J7.150),Chaperone DnaJ-domain superfamily protein 39165,42614,40440 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein AT4g19590) (Uncharacterized protein F24J7.150),Chaperone DnaJ-domain superfamily protein locus:2122970; AT4G19590 DnaJ domain NA NA NA NA NA NA NA ENOG411DS6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 43 Probable glucuronosyltransferase Os04g0650300 (EC 2.4.-.-) (OsGT43B),Glycosyltransferases (EC 2.4.-.-),Os04g0650300 protein (Fragment) B9FCV3,A0A0N7KCB8,A0A0P0WFS1,A0A0N7KJU0 GT43_ORYSJ,A0A0N7KCB8_ORYSJ,A0A0P0WFS1_ORYSJ,A0A0N7KJU0_ORYSJ Os04g0650300 LOC_Os04g55670 OsJ_16428,Os01g0147001 OSNPB_010147001,Os04g0650366 OSNPB_040650366,Os04g0650300 OSNPB_040650300 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}.,FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000256|RuleBase:RU363127}. ENOG411DS6U MDIS1,MDIS2 C0LGU7,C0LGQ4,F4KEN7 MDIS1_ARATH,MDIS2_ARATH,F4KEN7_ARATH Protein MALE DISCOVERER 1 (AtMDIS1) (Probable LRR receptor-like serine/threonine-protein kinase At5g45840) (EC 2.7.11.1),Protein MALE DISCOVERER 2 (AtMDIS2) (Probable LRR receptor-like serine/threonine-protein kinase MRH1) (EC 2.7.11.1) (Protein MORPHOGENESIS OF ROOT HAIR 1),Leucine-rich repeat protein kinase family protein DISRUPTION PHENOTYPE: Decreased micropylar guidance and fertilization efficiency. {ECO:0000269|PubMed:26863186}.,DISRUPTION PHENOTYPE: Short straight root hairs. {ECO:0000269|PubMed:16367956}. Short straight hairs Short, straight root hairs-N. Smirnoff-2006 FUNCTION: Involved in the pollen tube perception of the female signal. {ECO:0000269|PubMed:26863186}.,FUNCTION: Involved in the pollen tube perception of the female signal by binding an unidentified female attractant (PubMed:26863186). May be involved in the regulation of root hairs development (PubMed:16367956). {ECO:0000269|PubMed:16367956, ECO:0000269|PubMed:26863186}. 2.7.11.1 78476,75820,75345 Protein MALE DISCOVERER 1 (AtMDIS1) (Probable LRR receptor-like serine/threonine-protein kinase At5g45840) (EC 2.7.11.1),Protein MALE DISCOVERER 2 (AtMDIS2) (Probable LRR receptor-like serine/threonine-protein kinase MRH1) (EC 2.7.11.1) (Protein MORPHOGENESIS OF ROOT HAIR 1),Leucine-rich repeat protein kinase family protein endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; protein phosphorylation [GO:0006468],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468]; root hair cell differentiation [GO:0048765],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in pollen tubes and seedlings. {ECO:0000269|PubMed:26863186}. locus:2124102;,locus:2152400; AT5G45840,AT4G18640 LRR receptor-like serine threonine-protein kinase Leucine-rich receptor-like protein kinase-like (Os01g0206800 protein),Os01g0674800 protein (Serine/threonine-specific protein kinase NPK15-like) Q5QNM3,Q5QM36 Q5QNM3_ORYSJ,Q5QM36_ORYSJ Os01g0206800 OSJNBa0016I09.6 OSNPB_010206800 P0451C06.37,Os01g0674800 Os01g0674800 OJ1117_G01.6 OSNPB_010674800 P0485G01.40 ENOG411EHSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DY1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q7X766 Q7X766_ORYSJ OSJNBa0035I04.3 prx54 Os04g0423800 OSJNBb0088C09.13 OSNPB_040423800 ENOG411EHSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4K8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4K4 MBG8.21 Q9FFT6 Q9FFT6_ARATH AT5g54940/MBG8_21 (Translation initiation factor SUI1 family protein) (Translation initiation factor-like protein) 12718 AT5g54940/MBG8_21 (Translation initiation factor SUI1 family protein) (Translation initiation factor-like protein) translation initiation factor activity [GO:0003743] locus:2160140; AT5G54940 factor SUI1 NA NA NA NA NA NA NA ENOG411DU2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LEM3 (ligand-effect modulator 3) family / CDC50 family ALA-interacting subunit Q653D8 Q653D8_ORYSJ Os09g0560600 OJ1065_E04.29 OsJ_30333 OSNPB_090560600 P0635G10.6 ENOG411DU2B F4IBV4 F4IBV4_ARATH Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) R-ATH-446193; 45028 Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; alpha-1,3-mannosyltransferase activity [GO:0000033]; oligosaccharide-lipid intermediate biosynthetic process [GO:0006490]; protein glycosylation in endoplasmic reticulum [GO:0033577] locus:2037608; AT1G78800 alpha-13 16-mannosyltransferase ALG2-like OSJNBa0086O06.10 protein (Os04g0589600 protein) (cDNA clone:J013071F09, full insert sequence) (cDNA clone:J013157H01, full insert sequence) Q7XLZ9 Q7XLZ9_ORYSJ Os04g0589600 OsJ_15958 OSJNBa0086O06.10 OSNPB_040589600 ENOG411DU2A YAK1 Q9FGC1,Q8RWH3,A0A1P8BH92 Q9FGC1_ARATH,Q8RWH3_ARATH,A0A1P8BH92_ARATH Protein kinase-like (YAK1-like protein 1),At5g35980 (Protein kinase like protein) (Uncharacterized protein At5g35980At5g35990) (YAK1-like protein 1),YAK1-like protein 1 FUNCTION: Dual specificity protein kinase that phosphorylates ANN1, ANN2 and CP29B at serine and threonine residues, and ANN1, ANN2 and ANN4 at tyrosine residues. May regulate the phosphorylation status of annexin proteins (PubMed:26452715). Acts as positive regulator in abscisic acid (ABA)-mediated regulation of postgermination growth and drought response. May regulate the expression of ABA-responsive genes such as RD22, RD29A, LTI65/RD29B and RAB18 (PubMed:27264339). {ECO:0000269|PubMed:26452715, ECO:0000269|PubMed:27264339}. 87231,105523,102059 Protein kinase-like (YAK1-like protein 1),At5g35980 (Protein kinase like protein) (Uncharacterized protein At5g35980At5g35990) (YAK1-like protein 1),YAK1-like protein 1 ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytosol [GO:0005829]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; response to abscisic acid [GO:0009737] locus:2162868; AT5G35980 Protein kinase domain OSJNBa0041A02.17 protein (Os04g0602800 protein) (cDNA clone:J023134G14, full insert sequence),Os02g0702500 protein (Fragment) Q7XTQ2,A0A0N7KFY1 Q7XTQ2_ORYSJ,A0A0N7KFY1_ORYSJ Os04g0602800 OSJNBa0041A02.17 OSNPB_040602800,Os02g0702500 OSNPB_020702500 ENOG411DU2G Q9LPD7 Q9LPD7_ARATH T12C22.21 protein (Transmembrane protein) (Uncharacterized protein At1g44920) 27715 T12C22.21 protein (Transmembrane protein) (Uncharacterized protein At1g44920) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2028235; AT1G44920 Protein of unknown function (DUF3054) Os03g0729100 protein A0A0P0W2V6 A0A0P0W2V6_ORYSJ Os03g0729100 OSNPB_030729100 ENOG411DU2F Q9ZUS6 Q9ZUS6_ARATH At2g37400 (Chloroplast lumen common protein family) (Tetratricopeptide repeat (TPR)-like superfamily protein) 38156 At2g37400 (Chloroplast lumen common protein family) (Tetratricopeptide repeat (TPR)-like superfamily protein) chloroplast envelope [GO:0009941]; plastid [GO:0009536] locus:2049741; AT2G37400 Inherit from euNOG: chloroplast lumen common family protein NA NA NA NA NA NA NA ENOG411DU2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0430400 protein (Fragment) A0A0P0WA98 A0A0P0WA98_ORYSJ Os04g0430400 OSNPB_040430400 ENOG411DU2D Q94AT1 P2C76_ARATH Probable protein phosphatase 2C 76 (AtPP2C76) (EC 3.1.3.16) 3.1.3.16 45786 Probable protein phosphatase 2C 76 (AtPP2C76) (EC 3.1.3.16) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2163781; AT5G53140 phosphatase 2C Probable protein phosphatase 2C 52 (OsPP2C52) (EC 3.1.3.16),Probable protein phosphatase 2C member 13, mitochondrial (OsPP2C13) (EC 3.1.3.16) (Protein DOWNREGULATED IN CW-CMS 11),Os02g0255100 protein (Fragment) Q6L5C4,Q6EN45,A0A0P0VH77 P2C52_ORYSJ,P2C13_ORYSJ,A0A0P0VH77_ORYSJ Os05g0587100 LOC_Os05g50970 OJ1007_H05.6 OsJ_000225,PP2C13 DCW11 Os02g0255100 LOC_Os02g15594 OSJNBa0052K15.14,Os02g0255100 OSNPB_020255100 FUNCTION: Probable protein phosphatase that may play a role as a mitochondrial signal transduction mediator in pollen germination. May function in retrograde signaling from the mitochondria to the nucleus. May be a downstream factor of cytoplasmic male sterility (CMS). CMS is caused by genetic incompatibility between nuclei and mitochondria within male reproductive organs. {ECO:0000269|PubMed:18308761}. MISCELLANEOUS: Plants silencing PP2C13 exhibit a major loss of seed-set fertility, without visible defect in pollen development. Plants silencing PP2C13 show up-regulation of AOX1A gene which is regulated by mitochondrial retrograde signaling. {ECO:0000269|PubMed:18308761}. ENOG411DU2K Q9MAA9 Q9MAA9_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (T12H1.6 protein) (Uncharacterized protein At3g05100) 37719 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (T12H1.6 protein) (Uncharacterized protein At3g05100) methyltransferase activity [GO:0008168] locus:2096274; AT3G05100 NA Os07g0667400 protein Q7F0M0 Q7F0M0_ORYSJ P0450A04.130 Os07g0667400 OSNPB_070667400 ENOG411DU2J ASB1,ASB2,F4F7.41 Q42565,Q9FJM5,Q9FE37,Q9FXK1,F4IAW5 ASB1_ARATH,ASB2_ARATH,Q9FE37_ARATH,Q9FXK1_ARATH,F4IAW5_ARATH Anthranilate synthase beta subunit 1, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 2-1) (Anthranilate synthase, glutamine amidotransferase component 2-1) (Protein TRYPTOPHAN BIOSYNTHESIS 4) (Protein WEAK ETHYLENE INSENSITIVE 7),Anthranilate synthase beta subunit 2, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 2-2) (Anthranilate synthase, glutamine amidotransferase component 2-2),Anthranilate synthase beta subunit (F5A9.13) (F5A9.3) (F5A9.7) (Glutamine amidotransferase type 1 family protein),F5A9.17 (Glutamine amidotransferase type 1 family protein),Anthranilate synthase beta subunit 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are insensitive to inhibition of root elongation by ethylene. {ECO:0000269|PubMed:15980261, ECO:0000269|PubMed:8400875}. FUNCTION: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS to produce anthranilate. Plays an important regulatory role in auxin production via the tryptophan-dependent biosynthetic pathway. {ECO:0000269|PubMed:15980261}.,FUNCTION: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS to produce anthranilate (By similarity). {ECO:0000250}. PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5. ARA:AT5G57890-MONOMER;,ARA:AT1G24909-MONOMER;ARA:AT1G25083-MONOMER;ARA:AT1G25155-MONOMER;,ARA:AT1G24807-MONOMER;ARA:AT1G25220-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 4.1.3.27 30460,30321,24692,26384,32152 Anthranilate synthase beta subunit 1, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 2-1) (Anthranilate synthase, glutamine amidotransferase component 2-1) (Protein TRYPTOPHAN BIOSYNTHESIS 4) (Protein WEAK ETHYLENE INSENSITIVE 7),Anthranilate synthase beta subunit 2, chloroplastic (EC 4.1.3.27) (Anthranilate synthase component 2-2) (Anthranilate synthase, glutamine amidotransferase component 2-2),Anthranilate synthase beta subunit (F5A9.13) (F5A9.3) (F5A9.7) (Glutamine amidotransferase type 1 family protein),F5A9.17 (Glutamine amidotransferase type 1 family protein),Anthranilate synthase beta subunit 1 anthranilate synthase complex [GO:0005950]; chloroplast [GO:0009507]; anthranilate synthase activity [GO:0004049]; glutamine metabolic process [GO:0006541]; regulation of auxin biosynthetic process [GO:0010600]; tryptophan biosynthetic process [GO:0000162],anthranilate synthase complex [GO:0005950]; chloroplast [GO:0009507]; anthranilate synthase activity [GO:0004049]; glutamine metabolic process [GO:0006541]; tryptophan biosynthetic process [GO:0000162],anthranilate synthase complex [GO:0005950]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541]; tryptophan biosynthetic process [GO:0000162],chloroplast [GO:0009507]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541],auxin biosynthetic process [GO:0009851]; lateral root formation [GO:0010311]; response to ethylene [GO:0009723]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in the central cylinder of mature primary root zones, including pericycle and early lateral root primordia, and vasculature of cotyledons. {ECO:0000269|PubMed:18435826}. locus:2174378;,locus:2825965;locus:2826077;locus:2826092;,locus:2826037;,locus:2033025; AT1G25220,AT5G57890,AT1G24909AT1G25083;AT1G25155;,AT1G24807 anthranilate synthase Anthranilate synthase beta subunit 1, chloroplastic (OsASB1) (EC 4.1.3.27) (Anthranilate synthase, glutamine amidotransferase component 2-1),Anthranilate synthase beta subunit 2, chloroplastic (OsASB2) (EC 4.1.3.27) (Anthranilate synthase, glutamine amidotransferase component 2-2) Q7XUS2,Q764B9 ASB1_ORYSJ,ASB2_ORYSJ ASB1 OASB1 Os04g0463500 LOC_Os04g38950 B1358B12.20 OSJNBa0060P14.1,ASB2 OASB2 Os03g0718000 LOC_Os03g50880 OsJ_12361 FUNCTION: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS to produce anthranilate. {ECO:0000269|PubMed:15159631}. ENOG411DU2I Q3EDF8 PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 66256 Pentatricopeptide repeat-containing protein At1g09900 intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2024296; AT1G09900 Pentatricopeptide repeat-containing protein Os02g0565400 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J013162J12, full insert sequence),Os02g0565400 protein (Fragment) Q6Z7E0,Q0E0A8 Q6Z7E0_ORYSJ,Q0E0A8_ORYSJ P0020C11.29-1 Os02g0565400 OSNPB_020565400,Os02g0565400 Os02g0565400 OSNPB_020565400 ENOG411DU2H MYH19.13 Q8GUI2,A0A1P8BGP7,A0A1P8BGQ3,F4KFW9 Q8GUI2_ARATH,A0A1P8BGP7_ARATH,A0A1P8BGQ3_ARATH,F4KFW9_ARATH At5g39940 (FAD/NAD(P)-binding oxidoreductase family protein) (Uncharacterized protein At5g39940),FAD/NAD(P)-binding oxidoreductase family protein 52072,45482,51644,49765 At5g39940 (FAD/NAD(P)-binding oxidoreductase family protein) (Uncharacterized protein At5g39940),FAD/NAD(P)-binding oxidoreductase family protein oxidoreductase activity [GO:0016491] locus:2177997; AT5G39940 HI0933-like protein Os12g0638800 protein A0A0P0YDC5 A0A0P0YDC5_ORYSJ Os12g0638800 OSNPB_120638800 ENOG411DU2N F4IHD3 F4IHD3_ARATH O-Glycosyl hydrolases family 17 protein 51306 O-Glycosyl hydrolases family 17 protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2056519; AT2G05790 glucan endo-1-3-beta-glucosidase Os02g0771700 protein (Putative beta-1,3-glucanase) (cDNA clone:001-017-E08, full insert sequence) Q6ZHG1 Q6ZHG1_ORYSJ Os02g0771700 OJ1353_F08.18 OJ1611_C08.4 OsJ_08543 OSNPB_020771700 ENOG411DU2M CNGC14,CNGC17 Q9SJA4,Q8L7Z0,A0A1P8B1L6 CNG14_ARATH,CNG17_ARATH,A0A1P8B1L6_ARATH Probable cyclic nucleotide-gated ion channel 14 (Cyclic nucleotide- and calmodulin-regulated ion channel 14),Cyclic nucleotide-gated ion channel 17 (Cyclic nucleotide- and calmodulin-regulated ion channel 17),Cyclic nucleotide-gated channel 14 FUNCTION: Probable cyclic nucleotide-gated ion channel.,FUNCTION: Probable cyclic nucleotide-gated ion channel (PubMed:11500563). Forms a functional cation-translocating unit with AHAs that is activated by PSKR1/BAK1 and possibly other BAK1/RLK complexes (PubMed:26071421). Required for PSK-induced protoplast expansion (PubMed:26071421). {ECO:0000269|PubMed:26071421, ECO:0000305|PubMed:11500563}. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 83454,83361,85415 Probable cyclic nucleotide-gated ion channel 14 (Cyclic nucleotide- and calmodulin-regulated ion channel 14),Cyclic nucleotide-gated ion channel 17 (Cyclic nucleotide- and calmodulin-regulated ion channel 17),Cyclic nucleotide-gated channel 14 integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; voltage-gated potassium channel activity [GO:0005249] locus:2046703;,locus:2118816; AT2G24610,AT4G30360 cyclic nucleotide-gated ion channel NA NA NA NA NA NA NA ENOG411DU2S INVB,INVD,INVF,A Q9SW48,F4I2X9,Q9C560,A0A1P8ANG1 INVB_ARATH,INVD_ARATH,INVF_ARATH,A0A1P8ANG1_ARATH Probable alkaline/neutral invertase B (A/N-INVB) (EC 3.2.1.26),Probable alkaline/neutral invertase D (A/N-INVD) (EC 3.2.1.26),Probable alkaline/neutral invertase F (A/N-INVF) (EC 3.2.1.26),Plant neutral invertase family protein FUNCTION: Invertase that cleaves sucrose into glucose and fructose. {ECO:0000250|UniProtKB:Q9LQF2}. 3.2.1.26 65037,60868,56792,53677 Probable alkaline/neutral invertase B (A/N-INVB) (EC 3.2.1.26),Probable alkaline/neutral invertase D (A/N-INVD) (EC 3.2.1.26),Probable alkaline/neutral invertase F (A/N-INVF) (EC 3.2.1.26),Plant neutral invertase family protein cytosol [GO:0005829]; glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926]; sucrose alpha-glucosidase activity [GO:0004575]; carbohydrate metabolic process [GO:0005975],glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926] locus:2116870;,locus:2199690;,locus:2016064; AT4G34860,AT1G22650,AT1G72000 invertase NA NA NA NA NA NA NA ENOG411DU2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF778) Os05g0539800 protein (cDNA clone:006-311-F09, full insert sequence) (cDNA clone:J033090F11, full insert sequence),Os05g0235450 protein (Fragment) Q53WK3,A0A0P0WJV6 Q53WK3_ORYSJ,A0A0P0WJV6_ORYSJ Os05g0539800 Os05g0539800 OsJ_19378 OSJNBa0052K01.19 OSNPB_050539800,Os05g0235450 OSNPB_050235450 ENOG411DU2Q PER61,PER26 Q9FLV5,O22862 PER61_ARATH,PER26_ARATH Probable peroxidase 61 (Atperox P61) (EC 1.11.1.7),Probable peroxidase 26 (Atperox P26) (EC 1.11.1.7) (ATP50) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress (Probable). The enzyme activity has to be proved. {ECO:0000305}. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G24070-MONOMER;,ARA:AT2G43480-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37312,37568 Probable peroxidase 61 (Atperox P61) (EC 1.11.1.7),Probable peroxidase 26 (Atperox P26) (EC 1.11.1.7) (ATP50) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2178682;,locus:2058208; AT5G24070,AT2G43480 peroxidase NA NA NA NA NA NA NA ENOG411DU2P HAG2 Q9FJT8,A0A1P8BFL5 HATB_ARATH,A0A1P8BFL5_ARATH Histone acetyltransferase type B catalytic subunit (HAT B) (EC 2.3.1.48),Histone acetyltransferase of the GNAT family 2 FUNCTION: Acetylates soluble but not nucleosomal H4 (By similarity). Acetylates 'Lys-12' of histone H4. {ECO:0000250|UniProtKB:O14929, ECO:0000269|PubMed:16648464}. R-ATH-3214847; 2.3.1.48 52738,48910 Histone acetyltransferase type B catalytic subunit (HAT B) (EC 2.3.1.48),Histone acetyltransferase of the GNAT family 2 chromosome, telomeric region [GO:0000781]; cytosol [GO:0005829]; nuclear chromatin [GO:0000790]; nucleus [GO:0005634]; H4 histone acetyltransferase activity [GO:0010485]; histone binding [GO:0042393]; chromatin silencing at telomere [GO:0006348],chromosome, telomeric region [GO:0000781]; nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; chromatin silencing at telomere [GO:0006348] locus:2165091; AT5G56740 acetyltransferase type b catalytic Probable histone acetyltransferase type B catalytic subunit (EC 2.3.1.48) (HAT B) Q6ES10 HAT1_ORYSJ HATB Os09g0347800 LOC_Os09g17850 P0512H04.23 P0698G06.3 FUNCTION: Acetylates soluble but not nucleosomal H4. {ECO:0000250|UniProtKB:O14929}. ENOG411DU2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0323600 protein (Putative obtusifoliol-14-demethylase) (cDNA clone:J013040I18, full insert sequence) Q6Z6U3 Q6Z6U3_ORYSJ Os02g0323600 OSNPB_020323600 P0688H12.23 ENOG411DU2V HIPP30,HIPP44 F4IQG4,F4JMB8,A0A1P8B1K9 HIP30_ARATH,HIP44_ARATH,A0A1P8B1K9_ARATH Heavy metal-associated isoprenylated plant protein 30 (AtHIP30) (Protein NPCC11),Heavy metal-associated isoprenylated plant protein 44 (AtHIP44),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 21068,21009,14814 Heavy metal-associated isoprenylated plant protein 30 (AtHIP30) (Protein NPCC11),Heavy metal-associated isoprenylated plant protein 44 (AtHIP44),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:1005716648;,locus:4010713877; AT2G18196,AT4G10465 Metal ion binding protein Copper chaperone, putative, expressed (Os03g0120400 protein) (cDNA clone:J023056A13, full insert sequence) Q8LMS1 Q8LMS1_ORYSJ Os03g0120400 LOC_Os03g02860 Os03g0120400 OJ1263H11.15 OJ1705B08.2 OsJ_09205 OSNPB_030120400 ENOG411DU2U PHL3,PHL2 Q8LAJ7,Q94A57 PHL3_ARATH,PHL2_ARATH Protein PHR1-LIKE 3 (Myb family transcription factor PHL3) (Protein UNFERTILIZED EMBRYO SAC 16),Protein PHR1-LIKE 2 (Myb family transcription factor PHL2) DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. FUNCTION: Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.,FUNCTION: Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. 31723,32205 Protein PHR1-LIKE 3 (Myb family transcription factor PHL3) (Protein UNFERTILIZED EMBRYO SAC 16),Protein PHR1-LIKE 2 (Myb family transcription factor PHL2) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; double fertilization forming a zygote and endosperm [GO:0009567]; positive regulation of gene expression [GO:0010628]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to phosphate starvation [GO:0016036]; positive regulation of gene expression [GO:0010628]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2119425;,locus:2093726; AT4G13640,AT3G24120 Transcription factor NA NA NA NA NA NA NA ENOG411DU2T PTM,MDJ22.18 F4JYC8,A0A1P8BGE8,A0A1P8BGG5,F4KBB1 PTM_ARATH,A0A1P8BGE8_ARATH,A0A1P8BGG5_ARATH,F4KBB1_ARATH DDT domain-containing protein PTM (DDT domain-containing protein 1) (Membrane-bound transcription factor PTM) (PHD type transcription factor with transmembrane domains),PHD finger family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21934661}. FUNCTION: Membrane-bound transcription factor required for the plastid-to-nucleus retrograde signaling. Functions in multiple retrograde pathways. The plastid-to-nucleus signal plays an important role in the coordinated expression of both nuclear- and chloroplast-localized genes that encode photosynthesis-related proteins. In the nucleus, activates ABI4 transcription in a PHD-dependent manner associated with histone modifications. Localized primarily in the chloroplast outer membrane as dormant form and, in response to retrograde signals, is released from the membrane through proteolytic cleavage and its cleaved fragment containing the transcription factor domain is redistributed to the nucleus, where it regulates the expression of particular nuclear genes. {ECO:0000269|PubMed:21934661}. 189210,145090,124539,175669 DDT domain-containing protein PTM (DDT domain-containing protein 1) (Membrane-bound transcription factor PTM) (PHD type transcription factor with transmembrane domains),PHD finger family protein chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979]; chloroplast-nucleus signaling pathway [GO:0010019]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],metal ion binding [GO:0046872] locus:2182437;,locus:2162509; AT5G35210,AT5G22760 PHD finger family protein NA NA NA NA NA NA NA ENOG411DU2Z VDE1 Q39249 VDE_ARATH Violaxanthin de-epoxidase, chloroplastic (AtVxDE) (EC 1.23.5.1) (Protein NON-PHOTOCHEMICAL QUENCHING 1) altered nonphotochemical quenching of chlorophyll fluorescence; unable to convert violaxanthin to zeaxanthin in excessive light via the xanthophyll cycle; affects the structural gene encoding violaxanthin deepoxidase; exhibits greatly reduced nonphotochemical quenching. demonstrating that violaxanthin deepoxidation is required for the bulk of rapidly reversible nonphotochemical qenching; altered regulation of photosynthetic energy conversion is associated with increased sensitivity to photoinhibition.,aba4-1 npq1 underwent a significant reduction in leaf chlorophyll content and a strong accumulation of the antioxidant molecule tocopherol with respect to npq1 aba4-1 npq1 was photoinhibited further and had only recovered to similar levels as the other genotypes after 6 d decrease of the chlorophyll/carotenoid ratio and an increase in tocopherol content,Lacks both zeaxanthin and tocopherols.,Molecules produced during oxidative stress (MDA) accumulate in vte1 npq1 leaves after 7 d in high light confirming the occurrence of lipid peroxidation. Also fatty acids and chlorophylls levels decrease in npq1 vte1 leaves.,PSII is strongly photoinhibited and lipid peroxidation is enhanced in the double mutant.,Very sensitive to high light stress. When exposed to high light at low temperaturemost of the mature leaves of npq1 vte1 bleached in contrast with wild-type npq1 or vte1 leaves which did not exhibit visual symptoms of oxidative stress.,Mutants does not convert violaxanthin to antheraxanthin and zeaxanthin during exposure to high light. Abnormal quenching of chlorophyll fluorescence-O. Bjorkman-1998 FUNCTION: Part of the xanthophyll (or violaxanthin) cycle for controlling the concentration of zeaxanthin in chloroplasts. Catalyzes the two-step mono de-epoxidation reaction. Stereospecific for all-trans xanthophylls. Zeaxanthin induces the dissipation of excitation energy in the chlorophyll of the light-harvesting protein complex of photosystem II. {ECO:0000269|PubMed:10982442, ECO:0000269|PubMed:11855651, ECO:0000269|PubMed:9668132}. MISCELLANEOUS: The amount of VDE in vivo is estimated to be 1 molecule per 20-100 electron transport chains. ARA:AT1G08550-MONOMER;MetaCyc:AT1G08550-MONOMER; 1.10.99.3; 1.23.5.1 52017 Violaxanthin de-epoxidase, chloroplastic (AtVxDE) (EC 1.23.5.1) (Protein NON-PHOTOCHEMICAL QUENCHING 1) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; thylakoid lumen [GO:0031977]; protein domain specific binding [GO:0019904]; violaxanthin de-epoxidase activity [GO:0046422]; chlorophyll metabolic process [GO:0015994]; fatty acid metabolic process [GO:0006631]; response to heat [GO:0009408]; xanthophyll cycle [GO:0010028] locus:2025510; AT1G08550 Violaxanthin de-epoxidase Os04g0379700 protein (Fragment) A0A0P0W9D2 A0A0P0W9D2_ORYSJ Os04g0379700 OSNPB_040379700 ENOG411DU2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0765500 protein Q0JJ13 Q0JJ13_ORYSJ Os01g0765500 Os01g0765500 OSNPB_010765500 ENOG411DU2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0223200 protein (Putative esterase) (cDNA clone:J013101L22, full insert sequence),Os01g0223000 protein (Fragment),Os01g0223500 protein Q5NAP3,Q0JPH3,A0A0P0V0B1 Q5NAP3_ORYSJ,Q0JPH3_ORYSJ,A0A0P0V0B1_ORYSJ Os01g0223200 Os01g0223200 OsJ_00931 OSNPB_010223200 P0417G05.6 P0443E05.23,Os01g0223000 Os01g0223000 OSNPB_010223000,Os01g0223500 OSNPB_010223500 ENOG411DU23 FAN1 Q5XVJ4,A0A1P8AVS9,A0A1P8AVS5,A0A1P8AVV1 FAN1_ARATH,A0A1P8AVS9_ARATH,A0A1P8AVS5_ARATH,A0A1P8AVV1_ARATH Fanconi-associated nuclease 1 homolog (AtFAN1) (EC 3.1.4.1),Zinc ion binding/nucleic acid binding/hydrolase FUNCTION: Nuclease required for the repair of DNA interstrand cross-links (ICLs) (PubMed:25779053). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions (By similarity). May act upstream of the helicase RECQL4A and the ATPase RAD5A, which is involved in error-free post-replicative repair. Functions independently of MUS81 pathway, but in a similar pathway with RECQ4A, RAD5A and MFH1 in ICL repair (PubMed:25779053). {ECO:0000250|UniProtKB:Q9Y2M0, ECO:0000269|PubMed:25779053}. ARA:GQT-2585-MONOMER; 3.1.4.1 101408,78488,67383,58112 Fanconi-associated nuclease 1 homolog (AtFAN1) (EC 3.1.4.1),Zinc ion binding/nucleic acid binding/hydrolase nucleus [GO:0005634]; 5'-3' exonuclease activity [GO:0008409]; 5'-flap endonuclease activity [GO:0017108]; flap-structured DNA binding [GO:0070336]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; phosphodiesterase I activity [GO:0004528]; zinc ion binding [GO:0008270]; interstrand cross-link repair [GO:0036297],hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; nuclease activity [GO:0004518]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; interstrand cross-link repair [GO:0036297] locus:2007740; AT1G48360 Fanconi-associated nuclease 1 homolog Fanconi-associated nuclease 1 homolog (EC 3.1.4.1) Q5SNL7 FAN1_ORYSJ Os06g0171800 LOC_Os06g07490 OsJ_20287 P0675A05.29 FUNCTION: Nuclease required for the repair of DNA interstrand cross-links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. {ECO:0000250|UniProtKB:Q9Y2M0}. ENOG411DU22 REV7 Q94FL5,A0A1P8ASH7 REV7_ARATH,A0A1P8ASH7_ARATH DNA polymerase zeta processivity subunit (Revertibility protein 7 homolog) (AtREV7) (REV7 homolog),DNA-binding HORMA family protein Mutant plants were moderately sensitive to UV-B irradiation than the wild type when mutant seedlings were irradiated with various doses of UV-B irradiation and grown in the light. Aerial tissue growth was inhibited by long-term UV-B irradiation. Sensitive to UV-B light and cisplatin-A. Tanaka-2005 FUNCTION: Regulatory subunit of the error prone DNA polymerase zeta. Involved in damage-tolerance mechanisms through translesion DNA synthesis (By similarity). {ECO:0000250, ECO:0000269|PubMed:15908599}. R-ATH-110312;R-ATH-5655862;R-ATH-5656121; 24393,22257 DNA polymerase zeta processivity subunit (Revertibility protein 7 homolog) (AtREV7) (REV7 homolog),DNA-binding HORMA family protein nucleus [GO:0005634]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; response to UV-B [GO:0010224],DNA binding [GO:0003677] locus:2017958; AT1G16590 Mitotic spindle assembly checkpoint protein NA NA NA NA NA NA NA ENOG411DU21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: GDSL esterase lipase Os01g0243000 protein (cDNA clone:001-114-B04, full insert sequence) Q5NA74 Q5NA74_ORYSJ Os01g0243000 B1066G12.21 OsJ_01072 OSNPB_010243000 ENOG411DU20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS family transcription factor containing protein expressed GRAS family transcription factor containing protein, expressed (GRAS family transcription factor, putative) (Os11g0705200 protein),Os11g0139600 protein Q53MB0,A0A0P0XZ47 Q53MB0_ORYSJ,A0A0P0XZ47_ORYSJ LOC_Os11g47870 Os11g0705200 OsJ_34870 OSNPB_110705200,Os11g0139600 OSNPB_110139600 ENOG411DU27 PCMP-H91 Q9LXE8 PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340, mitochondrial 70087 Pentatricopeptide repeat-containing protein At5g15340, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2150936; AT5G15340 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DU26 SCL29 Q9LRW3 SCL29_ARATH Scarecrow-like protein 29 (AtSCL29) (GRAS family protein 16) (AtGRAS-16) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 57181 Scarecrow-like protein 29 (AtSCL29) (GRAS family protein 16) (AtGRAS-16) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of secondary shoot formation [GO:2000032]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots and flowers. {ECO:0000269|PubMed:18500650}. locus:2087994; AT3G13840 Pathway 1 GRAS family transcription factor containing protein, expressed (Os03g0408600 protein) (Putative transcription factor),Os08g0465100 protein Q84MQ9,A0A0P0XGW6 Q84MQ9_ORYSJ,A0A0P0XGW6_ORYSJ OSJNBa0030J19.7 Os03g0408600 LOC_Os03g29480 OSNPB_030408600,Os08g0465100 OSNPB_080465100 ENOG411DU25 Q94AK8 Q94AK8_ARATH Ribosome assembly factor mrt4 FUNCTION: Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. {ECO:0000256|RuleBase:RU364039}. 27242 Ribosome assembly factor mrt4 cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; nuclear-transcribed mRNA catabolic process [GO:0000956]; ribosomal large subunit assembly [GO:0000027]; rRNA processing [GO:0006364] locus:2032970; AT1G25260 mRNA turnover protein 4 Ribosome assembly factor mrt4,Ribosome assembly factor mrt4 (Fragment) Q2RBN3,A0A0P0Y5W0 Q2RBN3_ORYSJ,A0A0P0Y5W0_ORYSJ Os11g0105400 LOC_Os11g01420 Os11g0105400 OsJ_34914 OSNPB_110105400,Os12g0105200 OSNPB_120105200 FUNCTION: Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. {ECO:0000256|RuleBase:RU364039}. ENOG411DU24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA helix-loop-helix DNA-binding domain containing protein Helix-loop-helix DNA-binding domain containing protein (Os12g0589000 protein) Q2QMV9 Q2QMV9_ORYSJ Os12g0589000 LOC_Os12g39850 OsJ_36693 OSNPB_120589000 ENOG411DU29 NARA5 Q940Y6 Q940Y6_ARATH AT4g27600/T29A15_90 (PfkB-like carbohydrate kinase family protein) Seedling lethal without exogenous sucrose; Pale green seedlings-A. Yokota-2009 50032 AT4g27600/T29A15_90 (PfkB-like carbohydrate kinase family protein) chloroplast [GO:0009507]; kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; photosynthesis [GO:0015979] locus:2137782; AT4G27600 Carbohydrate kinase Carbohydrate kinase, putative, expressed (Os10g0573000 protein) (Putative adenosine kinase) (cDNA clone:J023136M20, full insert sequence) Q7XBZ0 Q7XBZ0_ORYSJ LOC_Os10g42240 Os10g0573000 OsJ_32551 OSJNBa0003O19.22 OSNPB_100573000 ENOG411DU28 DVR Q1H537 DCVR_ARATH Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic (EC 1.3.1.75) (Protein PALE-GREEN AND CHLOROPHYLL B REDUCED 2) DISRUPTION PHENOTYPE: Pale-green leaves with a reduced amount of chlorophylls a and b, and an accumulation of divinyl chlorophylls. Severe reduction of grana stacks in chloroplasts. {ECO:0000269|PubMed:15695432}. plae-green phenotype. Growth rate severely reduced compared to wild-type. The thylakoid membranes are arranged in a disorderly fashion and do not develop distinct grana stacks; extensive adhesion of two to a few thylakoid membranes is observed instead. No distinct differences in the size and the number of chloroplasts between wild-type and mutant. Starch granules are not found in the mutant chloroplasts suggesting a reduction of photosynthetic activity. Pale green-N. Hayashida-2005 FUNCTION: Catalyzes the conversion of divinyl chlorophyllide to monovinyl chlorophyllide. Reduces the 8-vinyl group of the tetrapyrrole to an ethyl group using NADPH as the reductant. The best substrate is (3,8-divinyl)-chlorophyllide a (DV-Chlidea). Very low activity with (3,8-divinyl)-protochlorophyllide a (DV-Pchlidea) and (3,8-divinyl)-magnesium-protoporphyrin IX monomethyl ester (DV-MPE). No activity with (3,8-divinyl)-chlorophyllide b (DV-Chlideb), (3,8-divinyl)-magnesium-protoporphyrin IX (DV-Mg-Proto) and either (3,8-divinyl)-chlorophyll a (DV-Chla) or b (DV-Chlb). {ECO:0000269|PubMed:15632054, ECO:0000269|PubMed:15695432, ECO:0000269|PubMed:17991629, ECO:0000269|PubMed:23154534}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. 1.3.1.75 45893 Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic (EC 1.3.1.75) (Protein PALE-GREEN AND CHLOROPHYLL B REDUCED 2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; membrane [GO:0016020]; 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity [GO:0051744]; divinyl chlorophyllide a 8-vinyl-reductase activity [GO:0033728]; chlorophyll biosynthetic process [GO:0015995] TISSUE SPECIFICITY: Highly expressed in leaves, stems and flower buds. Detected in roots. {ECO:0000269|PubMed:15695432}. locus:2180019; AT5G18660 Catalyzes the conversion of divinyl chlorophyllide to monovinyl chlorophyllide. Reduces the 8-vinyl group of the tetrapyrrole to an ethyl group using NADPH as the reductant. Can use (38-divinyl)-chlorophyllide a (DV-Chlidea) (38-divinyl)- chlorophyll a (DV-Chla) (38-divinyl)-protochlorophyllide a (DV- Pchlidea) (38-divinyl)-magnesium-protoporphyrin IX monomethyl ester (DV-MPE) (38-divinyl)-magnesium-protoporphyrin IX (DV-Mg- Proto) as substrates Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic (EC 1.3.1.75) Q10LH0 DCVR_ORYSJ DVR Os03g0351200 LOC_Os03g22780 OsJ_10840 FUNCTION: Catalyzes the conversion of divinyl chlorophyllide to monovinyl chlorophyllide. Reduces the 8-vinyl group of the tetrapyrrole to an ethyl group using NADPH as the reductant. Can use (3,8-divinyl)-chlorophyllide a (DV-Chlidea) > (3,8-divinyl)-chlorophyll a (DV-Chla) > (3,8-divinyl)-protochlorophyllide a (DV-Pchlidea) > (3,8-divinyl)-magnesium-protoporphyrin IX monomethyl ester (DV-MPE) > (3,8-divinyl)-magnesium-protoporphyrin IX (DV-Mg-Proto) as substrates. {ECO:0000250|UniProtKB:D5L1S4}. ENOG411E4KW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 DUF584 domain-containing protein (OSJNBa0019D11.12 protein) (Os04g0520700 protein) (cDNA clone:J013036A08, full insert sequence) Q7XUA4 Q7XUA4_ORYSJ Os04g0520700 Os04g0520700 OsJ_03611 OSJNBa0019D11.12 OSNPB_040520700 ENOG411E4KN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 Os01g0242400 protein (cDNA clone:002-150-C08, full insert sequence) Q5NA79 Q5NA79_ORYSJ Os01g0242400 B1066G12.15 OSNPB_010242400 ENOG411E4KK MBF1C Q9LV58,F4J6M0 MBF1C_ARATH,F4J6M0_ARATH Multiprotein-bridging factor 1c,Multiprotein bridging factor 1C DISRUPTION PHENOTYPE: Plants are deficient in basal thermotolerance. {ECO:0000269|PubMed:18201973}. FUNCTION: Transcriptional coactivator that stimulates transcriptional activity by bridging regulatory proteins and TBP, thereby recruiting TBP to promoters occupied by DNA-binding regulators. Involved in the tolerance to heat and osmotic stress by partially activating the ethylene-response signal transduction pathway. {ECO:0000269|PubMed:14988493, ECO:0000269|PubMed:16244138, ECO:0000269|PubMed:18201973}. 16403,10959 Multiprotein-bridging factor 1c,Multiprotein bridging factor 1C cytoplasm [GO:0005737]; nucleolus [GO:0005730]; sequence-specific DNA binding [GO:0043565]; transcription coactivator activity [GO:0003713]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to heat [GO:0009408]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Scarcely expressed in early stages, restricted to the shoot apical meristem in 14-day-old seedlings and detected in all tissues in 28-day-old seedlings. {ECO:0000269|PubMed:15451167}. TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers, siliques and shoots. Not detected in seeds. {ECO:0000269|PubMed:14988493, ECO:0000269|PubMed:15451167}. locus:2091747; AT3G24500 Multiprotein bridging factor 1 Os06g0592500 protein (Putative ethylene-responsive transcriptional coactivator) (cDNA clone:002-157-H08, full insert sequence) (cDNA clone:J033114G13, full insert sequence) Q69XD8 Q69XD8_ORYSJ Os06g0592500 Os06g0592500 OsJ_21850 OSNPB_060592500 P0502H06.26 ENOG411E4KH PHS1 Q45GQ7 POHS1_ARATH Protein POOR HOMOLOGOUS SYNAPSIS 1 DISRUPTION PHENOTYPE: Sterility. Chromosome paring defects during meiosis. {ECO:0000269|PubMed:19918061}. FUNCTION: Required for accurate chromosome segregation in meiosis. Required for pairing to occur between homologous chromosomes. Acts in early recombination steps and ensures pairing fidelity and proper repair of meiotic DNA double-strand-breaks. Regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus. May affect pairing of the gene-rich fraction of the genome rather than preventing pairing between repetitive DNA elements. {ECO:0000269|PubMed:19918061}. 39499 Protein POOR HOMOLOGOUS SYNAPSIS 1 cytoplasm [GO:0005737]; synapsis [GO:0007129] AT1G10710 Poor homologous synapsis 1 Os06g0473000 protein (Fragment) A0A0P0WWM6 A0A0P0WWM6_ORYSJ Os06g0473000 OSNPB_060473000 ENOG411EA3B LAC13 Q9LYQ2,A0A1P8BAN2 LAC13_ARATH,A0A1P8BAN2_ARATH Laccase-13 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 13) (Diphenol oxidase 13) (Urishiol oxidase 13),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) no observable phenotype FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ARA:AT5G07130-MONOMER; 1.10.3.2 63145,53414 Laccase-13 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 13) (Diphenol oxidase 13) (Urishiol oxidase 13),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Mostly expressed in roots. Also detected in leaves, stems and flowers but not in siliques. {ECO:0000269|PubMed:16804053}. locus:2182895; AT5G07130 Multicopper oxidase NA NA NA NA NA NA NA ENOG411E368 ERF1A O80337 EF100_ARATH Ethylene-responsive transcription factor 1A (AtERF1A) (Ethylene-responsive element-binding factor 1A) (EREBP-1A) FUNCTION: Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. 29190 Ethylene-responsive transcription factor 1A (AtERF1A) (Ethylene-responsive element-binding factor 1A) (EREBP-1A) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell division [GO:0051301]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944] TISSUE SPECIFICITY: Ubiquitously expressed, mostly in flowers and rosettes after ethylene treatment. {ECO:0000269|PubMed:11950980}. locus:2129116; AT4G17500 Transcription factor NA NA NA NA NA NA NA ENOG411E363 FLA11 Q8LEJ6 FLA11_ARATH Fasciclin-like arabinogalactan protein 11 FUNCTION: May be a cell surface adhesion protein. 25592 Fasciclin-like arabinogalactan protein 11 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; plant-type secondary cell wall biogenesis [GO:0009834] TISSUE SPECIFICITY: Expressed in the sclerenchyma cells of inflorescence stems and siliques. {ECO:0000269|PubMed:16244449}. locus:2143443; AT5G03170 arabinogalactan protein Os01g0159200 protein (Fragment) A0A0P0UYI9 A0A0P0UYI9_ORYSJ Os01g0159200 OSNPB_010159200 ENOG411E361 O65659,A0A1P8B4F7,A0A1P8B4F0 O65659_ARATH,A0A1P8B4F7_ARATH,A0A1P8B4F0_ARATH At4g39720 (Uncharacterized protein AT4g39720) (VQ motif-containing protein),VQ motif-containing protein 31483,32271,32068 At4g39720 (Uncharacterized protein AT4g39720) (VQ motif-containing protein),VQ motif-containing protein locus:2135207; AT4G39720 VQ motif Os09g0370500 protein A0A0P0XMF6 A0A0P0XMF6_ORYSJ Os09g0370500 OSNPB_090370500 ENOG411E366 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os07g0479600 protein Q0D6H2 Q0D6H2_ORYSJ Os07g0479600 Os07g0479600 OSNPB_070479600 ENOG411E367 PRO5 Q9FE63 PROF5_ARATH Profilin-5 FUNCTION: Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG (By similarity). {ECO:0000250}. 14036 Profilin-5 actin cytoskeleton [GO:0015629]; cell cortex [GO:0005938]; actin monomer binding [GO:0003785]; sequestering of actin monomers [GO:0042989] AT5G56600 Binds to actin and affects the structure of the cytoskeleton. At high concentrations profilin prevents the polymerization of actin whereas it enhances it at low concentrations (By similarity) NA NA NA NA NA NA NA ENOG411E365 Q9C931,F4HRR1 Q9C931_ARATH,F4HRR1_ARATH Toll-Interleukin-Resistance (TIR) domain family protein (Uncharacterized protein F14G24.17),Toll-Interleukin-Resistance (TIR) domain family protein 22806,21285 Toll-Interleukin-Resistance (TIR) domain family protein (Uncharacterized protein F14G24.17),Toll-Interleukin-Resistance (TIR) domain family protein signal transduction [GO:0007165] locus:2011541;,locus:1006230674; AT1G52900,AT1G61105 TMV resistance protein N-like NA NA NA NA NA NA NA ENOG411E36N CML11,CML8,CAM8 Q9LIK5,O23320,A0A1P8B8U5,A0A1P8B8T8,A0A1I9LLB2 CML11_ARATH,CML8_ARATH,A0A1P8B8U5_ARATH,A0A1P8B8T8_ARATH,A0A1I9LLB2_ARATH Calmodulin-like protein 11,Calmodulin-like protein 8 (AtCaM-8),Calmodulin 8,Calmodulin-like 11 FUNCTION: Potential calcium sensor. {ECO:0000250}.,FUNCTION: Potential calcium sensor. 20071,17156,15102,13771,15189 Calmodulin-like protein 11,Calmodulin-like protein 8 (AtCaM-8),Calmodulin 8,Calmodulin-like 11 calcium ion binding [GO:0005509],intracellular [GO:0005622]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722]; detection of calcium ion [GO:0005513] TISSUE SPECIFICITY: Expressed at low levels in leaves, flowers and siliques. {ECO:0000269|PubMed:11855649}. locus:2084543;,locus:2130035; AT3G22930,AT4G14640 calmodulin NA NA NA NA NA NA NA ENOG411E36C MHF15.5 Q9FNG5 Q9FNG5_ARATH At5g06430 (Thioredoxin superfamily protein) 21752 At5g06430 (Thioredoxin superfamily protein) plastid [GO:0009536]; cell redox homeostasis [GO:0045454] locus:2164325; AT5G06430 NA Expressed protein (Os11g0592900 protein) (cDNA, clone: J065193O08, full insert sequence),Os11g0597601 protein (Fragment),Os11g0597500 protein Q2R1U3,A0A0P0Y4S7,A0A0P0Y4A8 Q2R1U3_ORYSJ,A0A0P0Y4S7_ORYSJ,A0A0P0Y4A8_ORYSJ LOC_Os11g38040 Os11g0592900 OsJ_34477 OSNPB_110592900,Os11g0597601 OSNPB_110597601,Os11g0597500 OSNPB_110597500 ENOG411E36G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) Protein G1-like7 Q941W1 G1L7_ORYSJ G1L7 Os01g0828900 LOC_Os01g61310 B1088C09.26 FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. ENOG411E36P RVE7L,RVE7 F4J2J6,B3H5A8 RVE7L_ARATH,RVE7_ARATH Protein REVEILLE 7-like,Protein REVEILLE 7 (Early-phytochrome-responsive 1) (MYB-related transcription factor EPR1) DISRUPTION PHENOTYPE: No effect on the regulation of core clock associated genes or on the hypocotyl length. Rve1, rve2 and rve7 triple mutant has no alteration in the period or phase of the clock. {ECO:0000269|PubMed:19805390}. Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Transcription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}. 37605,41542 Protein REVEILLE 7-like,Protein REVEILLE 7 (Early-phytochrome-responsive 1) (MYB-related transcription factor EPR1) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; regulation of transcription, DNA-templated [GO:0006355]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:504955668;,locus:2014114; AT3G10113,AT1G18330 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E36W Q9FGT3 Q9FGT3_ARATH AT5g58110/k21l19_90 (Chaperone binding / ATPase activator) 22435 AT5g58110/k21l19_90 (Chaperone binding / ATPase activator) ATPase activator activity [GO:0001671]; chaperone binding [GO:0051087] locus:2155851; AT5G58110 Activator of Hsp90 ATPase N-terminal Os02g0139100 protein (cDNA clone:J013038J22, full insert sequence),Os06g0703800 protein (cDNA clone:J013052F01, full insert sequence) Q6YXZ3,Q5Z814 Q6YXZ3_ORYSJ,Q5Z814_ORYSJ Os02g0139100 Os02g0139100 OsJ_05315 OSJNBa0026E05.33 OSNPB_020139100,Os06g0703800 Os06g0703800 OJ1215_E11.15 OsJ_22554 OSNPB_060703800 ENOG411E36T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411DUZR MHK10.1,T10K17.40 Q9SLD0,Q9M2R4,A0A1I9LQG7 Q9SLD0_ARATH,Q9M2R4_ARATH,A0A1I9LQG7_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor-like protein kinase),Leucine-rich repeat protein kinase family protein 71073,72421,51711 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor-like protein kinase),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2053751;,locus:2095773; AT2G42290,AT3G57830 Leucine-rich repeat receptor-like protein kinase Os08g0506400 protein (Putative leucine-rich repeat/receptor protein kinase) (cDNA, clone: J090033G21, full insert sequence) Q6Z3S1 Q6Z3S1_ORYSJ Os08g0506400 OSJNBa0025J22.33 OSNPB_080506400 ENOG411DUZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme Os06g0158000 protein (Putative acyl-CoA synthetase) Q5VM91 Q5VM91_ORYSJ Os06g0158000 KMK0024M20.27 Os06g0158000 OSNPB_060158000 P0046E09.33 P0702F05.13 ENOG411DUZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulase (glycosyl hydrolase family 5) NA NA NA NA NA NA NA ENOG411DUZU IAN6,IAN9,IAN8,IAN3,IAN10,IAN4,IAN11,IAN2,IAN7,IAN1,IAN5,PP2-A3,AIG1 Q9C8V0,F4HT21,P54120,Q9C8U6,O81025,Q9C8U7,Q9T0F2,Q9C8U5,Q9C8V2,Q9C8U2,Q9C8U8,Q9C8U4,A0A1P8AZX7,A0A1P8AUC4,A0A1P8B003,A0A1P8AZX8 IAN6_ARATH,IAN9_ARATH,IAN8_ARATH,IAN3_ARATH,IAN10_ARATH,IAN4_ARATH,IAN11_ARATH,IAN2_ARATH,IAN7_ARATH,IAN1_ARATH,IAN5_ARATH,Q9C8U4_ARATH,A0A1P8AZX7_ARATH,A0A1P8AUC4_ARATH,A0A1P8B003_ARATH,A0A1P8AZX8_ARATH Immune-associated nucleotide-binding protein 6 (AtIAN6) (AIG1-like protein),Immune-associated nucleotide-binding protein 9 (AtIAN9) (AIG1-like protein),Immune-associated nucleotide-binding protein 8 (AtIAN8) (Protein AIG1),Immune-associated nucleotide-binding protein 3 (AtIAN3) (AIG1-like protein),Immune-associated nucleotide-binding protein 10 (AtIAN10) (AIG1-like protein) (Putative protein PHLOEM PROTEIN 2-LIKE A3) (AtPP2-A3),Immune-associated nucleotide-binding protein 4 (AtIAN4) (AIG1-like protein),Immune-associated nucleotide-binding protein 11 (AtIAN11) (AIG1-like protein),Immune-associated nucleotide-binding protein 2 (AtIAN2) (AIG1-like protein),Immune-associated nucleotide-binding protein 7 (AtIAN7) (AIG1-like protein),Immune-associated nucleotide-binding protein 1 (AtIAN1) (AIG1-like protein),Immune-associated nucleotide-binding protein 5 (AtIAN5) (AIG1-like protein),AIG1-like protein; 48352-49494 (p-loop containing nucleoside triphosphate hydrolases superfamily protein),Phloem protein 2-A3,p-loop containing nucleoside triphosphate hydrolases superfamily protein 37822,38815,40070,37290,52217,36397,37801,26378,34622,25668,33679,28870,40212,42939,54239,43933 Immune-associated nucleotide-binding protein 6 (AtIAN6) (AIG1-like protein),Immune-associated nucleotide-binding protein 9 (AtIAN9) (AIG1-like protein),Immune-associated nucleotide-binding protein 8 (AtIAN8) (Protein AIG1),Immune-associated nucleotide-binding protein 3 (AtIAN3) (AIG1-like protein),Immune-associated nucleotide-binding protein 10 (AtIAN10) (AIG1-like protein) (Putative protein PHLOEM PROTEIN 2-LIKE A3) (AtPP2-A3),Immune-associated nucleotide-binding protein 4 (AtIAN4) (AIG1-like protein),Immune-associated nucleotide-binding protein 11 (AtIAN11) (AIG1-like protein),Immune-associated nucleotide-binding protein 2 (AtIAN2) (AIG1-like protein),Immune-associated nucleotide-binding protein 7 (AtIAN7) (AIG1-like protein),Immune-associated nucleotide-binding protein 1 (AtIAN1) (AIG1-like protein),Immune-associated nucleotide-binding protein 5 (AtIAN5) (AIG1-like protein),AIG1-like protein; 48352-49494 (p-loop containing nucleoside triphosphate hydrolases superfamily protein),Phloem protein 2-A3,p-loop containing nucleoside triphosphate hydrolases superfamily protein GTP binding [GO:0005525],GTP binding [GO:0005525]; response to bacterium [GO:0009617],carbohydrate binding [GO:0030246]; GTP binding [GO:0005525],GTP binding [GO:0005525]; hydrolase activity [GO:0016787] DEVELOPMENTAL STAGE: Expressed at the flowering stage. {ECO:0000305|PubMed:17723251}.,DEVELOPMENTAL STAGE: Highest expression levels in young seedlings and much lower expression abundance in the later developmental stages. {ECO:0000305|PubMed:17723251}.,DEVELOPMENTAL STAGE: Expressed during the young seedling stage. {ECO:0000305|PubMed:17723251}.,DEVELOPMENTAL STAGE: Expressed at the early flowering stage and at the late stage of silique development. {ECO:0000305|PubMed:17723251}. TISSUE SPECIFICITY: Mostly expressed in pollen. Also detected in lateral roots and radicles. {ECO:0000305|PubMed:17723251}.,TISSUE SPECIFICITY: Mainly expressed in leaves. {ECO:0000305|PubMed:17723251}.,TISSUE SPECIFICITY: Expressed in radicles of the germinating seeds. {ECO:0000305|PubMed:17723251}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000305|PubMed:17723251}.,TISSUE SPECIFICITY: Mostly expressed in pollen. {ECO:0000305|PubMed:17723251}.,TISSUE SPECIFICITY: Expressed in pollen, cotyledons and lateral roots. {ECO:0000305|PubMed:17723251}. locus:2203832;,locus:2009041;,locus:2203807;,locus:2203802;,locus:2039528;,locus:2203797;,locus:2140548;,locus:2203812;,locus:2203817;,locus:2012678;,locus:2203792;,locus:2203827; AT1G33930,AT1G33970,AT1G33960,AT1G33890,AT2G26820,AT1G33900,AT4G09930,AT1G33880,AT1G33950,AT1G33830,AT1G33910,AT1G33870 AIG1 family Os02g0557100 protein (Putative NTGP4) (cDNA clone:J013146D08, full insert sequence) Q6YVY1 Q6YVY1_ORYSJ Os02g0557100 Os02g0557100 OsJ_07140 OSJNBb0038F20.4 OSNPB_020557100 ENOG411EK66 FH4 O48682,A0A1P8AS15 FH4_ARATH,A0A1P8AS15_ARATH Formin-like protein 4 (AtFH4) (AtFORMIN-4),Formin-like protein FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. {ECO:0000269|PubMed:16313636}. 84066,58320 Formin-like protein 4 (AtFH4) (AtFORMIN-4),Formin-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in the whole plant (at protein level). {ECO:0000269|PubMed:16313636}. AT1G24150 actin binding actin filament binding profilin binding NA NA NA NA NA NA NA ENOG411DUZA Q93YR3 F10AL_ARATH FAM10 family protein At4g22670 R-ATH-3371453; 46621 FAM10 family protein At4g22670 cytosol [GO:0005829]; protein dimerization activity [GO:0046983]; response to cadmium ion [GO:0046686] locus:2132579; AT4G22670 FAM10 family protein At4g22670-like Os02g0100300 protein (Putative tetratricopeptide repeat (TPR)-containing protein) Q6YUA1 Q6YUA1_ORYSJ Os02g0100300 Os02g0100300 B1370C05.2 OsJ_04979 OSJNOa183H18.4 OSNPB_020100300 ENOG411EK69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plus-3 domain NA NA NA NA NA NA NA ENOG411DUZG BXL5 Q9LJN4 BXL5_ARATH Probable beta-D-xylosidase 5 (AtBXL5) (EC 3.2.1.-) ARA:AT3G19620-MONOMER; 3.2.1.- 85500 Probable beta-D-xylosidase 5 (AtBXL5) (EC 3.2.1.-) cell wall [GO:0005618]; proteinaceous extracellular matrix [GO:0005578]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2091236; AT3G19620 Glycosyl hydrolase family 3 N terminal domain NA NA NA NA NA NA NA ENOG411DUZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family Endonuclease/Exonuclease/phosphatase family protein, expressed (Os03g0360800 protein),Os07g0645500 protein Q10L30,A0A0P0X9J2 Q10L30_ORYSJ,A0A0P0X9J2_ORYSJ Os03g0360800 LOC_Os03g24610 OSNPB_030360800,Os07g0645500 OSNPB_070645500 ENOG411DUZD Q56XE2 Q56XE2_ARATH At1g77122 (Uncharacterized protein family UPF0090) 36876 At1g77122 (Uncharacterized protein family UPF0090) locus:1005716723; AT1G77122 Uncharacterised BCR YhbC family COG0779 OSJNBa0006B20.18 protein (Os04g0438300 protein) (cDNA clone:J013060K17, full insert sequence) Q7XRA8 Q7XRA8_ORYSJ Os04g0438300 Os04g0438300 OsJ_14901 OSJNBa0006B20.18 OSNPB_040438300 ENOG411EK6G F4K1G2,A0A1P8BC35,A0A1P8BC36 AEE19_ARATH,A0A1P8BC35_ARATH,A0A1P8BC36_ARATH Putative acyl-activating enzyme 19,AMP-dependent synthetase and ligase family protein 115594,100682,125531 Putative acyl-activating enzyme 19,AMP-dependent synthetase and ligase family protein catalytic activity [GO:0003824]; metabolic process [GO:0008152],ligase activity [GO:0016874]; metabolic process [GO:0008152] locus:2142908; AT5G35930 PQQ NA NA NA NA NA NA NA ENOG411EK6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: zinc finger Os06g0638000 protein A0A0P0WZ32 A0A0P0WZ32_ORYSJ Os06g0638000 OSNPB_060638000 ENOG411EK6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: vesicle-mediated transport NA NA NA NA NA NA NA ENOG411DUZ3 F20M13.250 Q9SZP6 Q9SZP6_ARATH AT4g38690/F20M13_250 (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein AT4g38690) (Uncharacterized protein F20M13.250) 36290 AT4g38690/F20M13_250 (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein AT4g38690) (Uncharacterized protein F20M13.250) phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] locus:2121229; AT4G38690 Phosphatidylinositol-specific phospholipase C X domain Os09g0535900 protein (cDNA clone:001-038-B04, full insert sequence),Os09g0535900 protein Q69JZ2,A0A0P0XQR7 Q69JZ2_ORYSJ,A0A0P0XQR7_ORYSJ Os09g0535900 OsJ_30143 OSNPB_090535900 P0569E11.10,Os09g0535900 OSNPB_090535900 ENOG411DUZ2 INP1 Q9SUV9 INP1_ARATH Protein INAPERTURATE POLLEN1 DISRUPTION PHENOTYPE: Normal and fertile plants with pollen having normal reticulate exine patterning but completely lacking apertures. {ECO:0000269|PubMed:23136373}. FUNCTION: Required for the formation of pollen surface apertures, which arise by restriction of exine deposition at specific sites. The aperture length depends on the INP1 dosage (PubMed:23136373). Does not play a role in specifying the number or position of apertures (PubMed:27177036). Acts in a sporophytic manner (PubMed:23136373). {ECO:0000269|PubMed:23136373, ECO:0000269|PubMed:27177036}. MISCELLANEOUS: The number and position of apertures is strongly correlated with pollen ploidy. {ECO:0000269|PubMed:27177036}. 31249 Protein INAPERTURATE POLLEN1 cytoplasm [GO:0005737]; sequence-specific DNA binding [GO:0043565]; pollen exine formation [GO:0010584]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected in stage 9 buds and appears to be confined to microspores. {ECO:0000269|PubMed:23136373}. TISSUE SPECIFICITY: Expressed only in anthers and in pollen. Not detected in other flower tissues, stems, leaves and siliques. {ECO:0000269|PubMed:23136373}. locus:2127525; AT4G22600 NA Os02g0661300 protein (cDNA clone:002-105-F06, full insert sequence) Q6H694 Q6H694_ORYSJ Os02g0661300 OSNPB_020661300 P0516F12.11 P0708H12.37 ENOG411EK6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411EK6S Q94AT3 Q94AT3_ARATH PfkB-like carbohydrate kinase family protein (Uncharacterized protein At1g49350) 40320 PfkB-like carbohydrate kinase family protein (Uncharacterized protein At1g49350) kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773] locus:2010187; AT1G49350 pfkB family carbohydrate kinase Os05g0185700 protein (cDNA clone:002-103-F05, full insert sequence) Q60F00 Q60F00_ORYSJ OJ1111_A10.13 Os05g0185700 OSNPB_050185700 ENOG411EK6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411DTMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EHB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cpn10 NA NA NA NA NA NA NA ENOG411EHBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os06g0124300 protein (cDNA, clone: J065161M15, full insert sequence) Q5VQB1 Q5VQB1_ORYSJ Os06g0124300 OsJ_02322 OSNPB_060124300 P0542E10.40 ENOG411EHBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX2W F4JYA1,F4JYA0 F4JYA1_ARATH,F4JYA0_ARATH AslB (DUF239),AslB, putative (DUF239) 39907,48657 AslB (DUF239),AslB, putative (DUF239) locus:2180542;,locus:2180647; AT5G25960,AT5G25950 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EHBC Q5Q0B1 Q5Q0B1_ARATH At4g39360 14832 At4g39360 locus:2136323; AT4G39360 NA NA NA NA NA NA NA NA ENOG411EHBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0184033 protein Q2QWT1 Q2QWT1_ORYSJ Os12g0184033 LOC_Os12g08310 OsJ_35454 OSNPB_120184033 ENOG411EHBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX2T FANCM I3XHK1,Q9C8V9,A0A1P8APE5,A0A1P8APH5,F4HYE5,F4HYE4 FANCM_ARATH,Q9C8V9_ARATH,A0A1P8APE5_ARATH,A0A1P8APH5_ARATH,F4HYE5_ARATH,F4HYE4_ARATH DEAD-box ATP-dependent RNA helicase FANCM (EC 3.6.4.13) (Fanconia anemia complementation group M-like protein),DEAD/DEAH-box RNA helicase family protein (Uncharacterized protein T22A15.6),DEAD/DEAH box RNA helicase family protein DISRUPTION PHENOTYPE: Reduced fertiliy. {ECO:0000269|PubMed:22547783}. FUNCTION: Involved in ordered homologous recombination (HR) events in somatic and meiotic cells (PubMed:22547783). Involved in the suppression of spontaneous HR events in somatic cells (PubMed:22547783, PubMed:24635147). Has an opposite function to the DNA binding cofactor MHF1 which promotes spontaneous HR. Functions in replicative repair independently of MHF1 and in a parallel pathway to the endonuclease MUS81 (PubMed:24635147). Acts in the same pathway as the two DNA-binding cofactors MHF1 and MHF2 to restrain class II meiotic crossover (CO), and acts exclusively with MHF1 and MHF2 during meiosis to repair DNA interstrand cross-links (ICLs) (PubMed:24635147, PubMed:25038251). This common pathway is in parallel to the pathway that involves the RECQ4A helicase (PubMed:24635147). Seems to be involved in the stabilization of recombination intermediates (PubMed:22860689, PubMed:22723424). Involved in DNA double-strand break (DSB) repair during meiosis. Required for synthesis-dependent strand annealing (SDSA) and to a lesser extent for single-strand annealing (SSA) (PubMed:22860689, PubMed:26161528). May processes meiotic DSB repair intermediates, possibly D-loops, driving them toward noncrossover (NCO) resolution (PubMed:22723424, PubMed:26161528). {ECO:0000269|PubMed:22547783, ECO:0000269|PubMed:22723424, ECO:0000269|PubMed:22860689, ECO:0000269|PubMed:24635147, ECO:0000269|PubMed:25038251, ECO:0000269|PubMed:26161528}. 3.6.4.13 150190,13040,155670,150037,145132,155796 DEAD-box ATP-dependent RNA helicase FANCM (EC 3.6.4.13) (Fanconia anemia complementation group M-like protein),DEAD/DEAH-box RNA helicase family protein (Uncharacterized protein T22A15.6),DEAD/DEAH box RNA helicase family protein nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; DNA recombination [GO:0006310]; DNA repair [GO:0006281],helicase activity [GO:0004386],ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386],ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; double-strand break repair via homologous recombination [GO:0000724]; negative regulation of reciprocal meiotic recombination [GO:0045128] locus:2199081;,locus:2014701; AT1G35530,AT1G36020 HELICc Os11g0180600 protein A0A0P0XZP0 A0A0P0XZP0_ORYSJ Os11g0180600 OSNPB_110180600 ENOG411EHBF A0A1P8B9R8,F4K626 A0A1P8B9R8_ARATH,F4K626_ARATH Serine protease inhibitor, potato inhibitor I-type family protein 12776,11560 Serine protease inhibitor, potato inhibitor I-type family protein integral component of membrane [GO:0016021]; peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response [GO:0006952]; response to wounding [GO:0009611] locus:2158397; AT5G43570 Potato inhibitor I family NA NA NA NA NA NA NA ENOG411EHBJ Q9LZ47 Q9LZ47_ARATH At5g02550 (Uncharacterized protein T22P11_140) 8181 At5g02550 (Uncharacterized protein T22P11_140) locus:2181793; AT5G02550 NA NA NA NA NA NA NA NA ENOG411EHBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:K_tetra NA NA NA NA NA NA NA ENOG411EAVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP NA NA NA NA NA NA NA ENOG411EAVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Chloride intracellular channel NA NA NA NA NA NA NA ENOG411E4MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class NA NA NA NA NA NA NA ENOG411DVN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain B3 domain-containing protein IDEF1 (Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1) Q6Z1Z3 IDEF1_ORYSJ IDEF1 Os08g0101000 LOC_Os08g01090 B1147B12.12 OsJ_25718 FUNCTION: Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. ENOG411E5Z8 GASA2,GASA3 P46688,P46687 GASA2_ARATH,GASA3_ARATH Gibberellin-regulated protein 2 (GAST1 protein homolog 2),Gibberellin-regulated protein 3 (GAST1 protein homolog 3) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. 10531,10705 Gibberellin-regulated protein 2 (GAST1 protein homolog 2),Gibberellin-regulated protein 3 (GAST1 protein homolog 3) extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740],extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740]; response to gibberellin [GO:0009739] TISSUE SPECIFICITY: Dry seeds and maturating siliques.,TISSUE SPECIFICITY: Expressed in siliques, dry seeds and vasculature of roots and rosette leaves. {ECO:0000269|PubMed:17284469}. locus:2136897;,locus:2136892; AT4G09610,AT4G09600 gibberellic acid mediated signaling pathway Os05g0432200 protein (Putative gibberellin regulated protein) Q6I5U9 Q6I5U9_ORYSJ Os05g0432200 OJ1301_G07.4 OJ1378_A04.9 OsJ_18646 OSNPB_050432200 ENOG411E5Z9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) GPI-anchored protein-like (Os01g0923200 protein) (cDNA clone:001-006-C11, full insert sequence) Q8RYH0 Q8RYH0_ORYSJ Os01g0923200 B1455F06.25 OsJ_04589 OSNPB_010923200 P0592G05.9 ENOG411E5Z0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E5Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein OSJNBa0084K01.9 protein (Os04g0662400 protein) (cDNA clone:002-148-C10, full insert sequence) Q7XM22 Q7XM22_ORYSJ Os04g0662400 Os04g0662400 OsJ_16510 OSJNBa0084K01.9 OSNPB_040662400 ENOG411E5Z2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411E5Z3 Q8GWD7 Q8GWD7_ARATH At5g53043 (Transcription factor) 10752 At5g53043 (Transcription factor) locus:1005716822; AT5G53045 Transcription factor Pcc1 Os02g0305800 protein (Os02g0305801 protein) (cDNA clone:J013075C07, full insert sequence),Os02g0306250 protein (Os08g0534400 protein) (Fragment) Q6K2Z6,A0A0P0VI01 Q6K2Z6_ORYSJ,A0A0P0VI01_ORYSJ Os02g0305800 Os02g0305801 OSNPB_020305800 P0543C11.13,Os02g0306250 Os08g0534400 OSNPB_020306250 OSNPB_080534400 ENOG411E5Z4 T1B9.19 Q9SFU5 Q9SFU5_ARATH Amino acid-ligase (T1B9.19 protein) 21843 Amino acid-ligase (T1B9.19 protein) ligase activity [GO:0016874] locus:2098470; AT3G07150 NA Os01g0918400 protein A0A0P0VC42 A0A0P0VC42_ORYSJ Os01g0918400 OSNPB_010918400 ENOG411E5Z5 Q570J5,A0A1P8AX61 Q570J5_ARATH,A0A1P8AX61_ARATH Uncharacterized protein At2g01755,Uncharacterized protein 19590,20405 Uncharacterized protein At2g01755,Uncharacterized protein chloroplast [GO:0009507] locus:504955907; AT2G01755 NA Expressed protein (Os03g0713200 protein) Q8W316 Q8W316_ORYSJ Os03g0713200 LOC_Os03g50530 Os03g0713200 OsJ_12334 OSJNBa0014G15.28 OSNPB_030713200 ENOG411E5Z6 Q9SGZ8,Q8VY80 Q9SGZ8_ARATH,Q8VY80_ARATH F28K19.24 (Senescence-associated family protein, putative (DUF581)) (Uncharacterized protein At1g78020),Senescence-associated family protein (DUF581) (Uncharacterized protein At1g22160) 17687,16964 F28K19.24 (Senescence-associated family protein, putative (DUF581)) (Uncharacterized protein At1g78020),Senescence-associated family protein (DUF581) (Uncharacterized protein At1g22160) locus:2029421;,locus:2030611; AT1G78020,AT1G22160 DUF581 domain containing protein expressed NA NA NA NA NA NA NA ENOG411E5Z7 Q94AL6 Q94AL6_ARATH Excitatory amino acid transporter (Uncharacterized protein At4g20150) ARA:AT4G20150-MONOMER;MetaCyc:AT4G20150-MONOMER; 9208 Excitatory amino acid transporter (Uncharacterized protein At4g20150) mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774] locus:2120367; AT4G20150 NA Os07g0498300 protein Q7XIF7 Q7XIF7_ORYSJ P0005E02.120 OJ1197_D06.113 Os07g0498300 OsJ_24342 OSNPB_070498300 ENOG411E5ZX F21F14.150 Q9M267,F4JG23 Q9M267_ARATH,F4JG23_ARATH Serine protease inhibitor, Kazal-type family protein (Uncharacterized protein At3g61980) (Uncharacterized protein F21F14.15) (Uncharacterized protein F21F14.150),Serine protease inhibitor, Kazal-type family protein 12285,15422 Serine protease inhibitor, Kazal-type family protein (Uncharacterized protein At3g61980) (Uncharacterized protein F21F14.15) (Uncharacterized protein F21F14.150),Serine protease inhibitor, Kazal-type family protein anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response to fungus [GO:0050832],integral component of membrane [GO:0016021]; peptidase activity [GO:0008233] locus:2079547;,locus:2831620; AT3G61980,AT4G01575 serine protease inhibitor Kazal-type family protein Os10g0140900 protein (Fragment) A0A0P0XRF1 A0A0P0XRF1_ORYSJ Os10g0140900 OSNPB_100140900 ENOG411E5ZY ESR2 Q9FYK5 ESR2_ARATH Ethylene-responsive transcription factor ESR2 (Protein DORNROESCHEN-LIKE) (Protein DRN-LIKE) (Protein ENHANCER OF SHOOT REGENERATION 2) (Protein SUPPRESSOR OF PHYTOCHROMEB 2) Defects in embryonic cell patterning in essentially all double mutants. Pleotropic cotyledon phenotypes. Large increase in phenotypic penetrance.,A quarter of drn-1 drnl-2/DRNL-2 progeny genotyped as double-homozygous mutants had pin-like embryos with complete absence of cotyledons. They directly initiated leaves from a functional shoot apical meristem.,sterile,Defective cotyledon development phenotypes at incomplete penetrance including monocotyledonous seedlings seedlings with partially fused cotyledons tricots or various tricot fusion combinations. The inappropriate cotyledon development leads to alterations of leaf phyllotaxy.,No embryo development defects.,Dramatically shorter hypocotyl compared to phyB-4 single mutant. Adult plants have curled leaves lacking petioles and irregularly shaped siliques. Incomplete penetrance of fused cotyledons; Abnormal leaf phyllotaxy; Stamens frequently converted to a filamentous structure; Short, crinkled petals-T. Jack-2007 FUNCTION: Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. MISCELLANEOUS: 'Dornroeschen' means 'Sleeping beauty' in German. 33829 Ethylene-responsive transcription factor ESR2 (Protein DORNROESCHEN-LIKE) (Protein DRN-LIKE) (Protein ENHANCER OF SHOOT REGENERATION 2) (Protein SUPPRESSOR OF PHYTOCHROMEB 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; embryonic pattern specification [GO:0009880]; ethylene-activated signaling pathway [GO:0009873]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of cell cycle [GO:0051726]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed in the embryo at globular stage in cotyledons primordia and later confined to cotyledons tips and shoot apical meristem. Also detected in emerging leaf primordia. {ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. TISSUE SPECIFICITY: Cotyledons, leaf primordia and shoot apical meristems. {ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. locus:2024076; AT1G24590 Transcription factor NA NA NA NA NA NA NA ENOG411E5ZZ BZIP53 Q9LZP8 BZP53_ARATH bZIP transcription factor 53 (AtbZIP53) DISRUPTION PHENOTYPE: Reduced seed maturation (MAT) genes expression (PubMed:19531597). Slight reduction in the dark-induced activation of POX1/PRODH1 transcript accumulation (PubMed:21278122). {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:21278122}. FUNCTION: Transcription activator that binds DNA to the C-box-like motif (5'-TGCTGACGTCA-3'), ABRE elements, G-box-like motif (5'-CCACGTGGCC-3'), DOF (5'-AAAG-3'), I-box (5'-GATAA-3'), BS1 (5'-AGCGGG-3'), MY3 (5'-CGACG-3'), 5'-CAGTGCGC-3' and 5'-ACTCAT-3' sequence in target gene promoters (PubMed:15047879, PubMed:16810321, PubMed:19531597, PubMed:21278122, PubMed:25108460). DNA-binding and subsequent transcription activation is triggered by heterodimerization with other bZIP proteins (e.g. BZIP1, BZIP10 and BZIP25) (PubMed:16810321, PubMed:19531597, PubMed:21278122). Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879, PubMed:16810321). Transcriptional activator of seed maturation (MAT) genes (e.g. AT2S2), including seed storage protein (SSP) and late embryogenesis abundant (LEA) genes (PubMed:19531597). Activated by low energy stress both by transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response, especially when heterodimerized with BZIP1, by triggering accumulation of sepcific proteins including ASN1 and POX1/PRODH1 (PubMed:21278122). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:25108460}. 16805 bZIP transcription factor 53 (AtbZIP53) nucleus [GO:0005634]; nutrient reservoir activity [GO:0045735]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to starvation [GO:0009267]; hypotonic response [GO:0006971]; positive regulation of seed maturation [GO:2000693]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In developing seeds, accumulates in embryo cotyledons during late maturation, from the torpedo to the green cotyledon stages. Also present in endosperm. {ECO:0000269|PubMed:19531597}. TISSUE SPECIFICITY: Expressed in developing seeds. {ECO:0000269|PubMed:19531597}. locus:2096024; AT3G62420 BZip transcription factor NA NA NA NA NA NA NA ENOG411E5ZP A0A1P8B9A4,A0A1P8B9B2,F4JLT1,B3H4A8 A0A1P8B9A4_ARATH,A0A1P8B9B2_ARATH,F4JLT1_ARATH,B3H4A8_ARATH Heavy metal transport/detoxification superfamily protein 20724,28642,25269,27798 Heavy metal transport/detoxification superfamily protein metal ion binding [GO:0046872]; metal ion transport [GO:0030001],cytoplasm [GO:0005737]; plasmodesma [GO:0009506]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:1006589875; AT4G16380 NA NA NA NA NA NA NA NA ENOG411E5ZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411E5ZR MQB2.27 A0A1P8BGY7,A0A1I9LMM7,F4J1Q7,A0A1I9LMM6,Q7XJ61,A8MS47,A0A1I9LMM8 A0A1P8BGY7_ARATH,A0A1I9LMM7_ARATH,F4J1Q7_ARATH,A0A1I9LMM6_ARATH,Q7XJ61_ARATH,A8MS47_ARATH,A0A1I9LMM8_ARATH RNA polymerase II, Rpb4, core protein,At5g62950 (RNA polymerase II, Rpb4, core protein) (Uncharacterized protein At5g62950) Homozygotes have a WT phenotype despite the fact that At5G62950 is greatly reduced.,Plants are dwarfed. In the hca2 mutant inflorescence stems petiolesand main veins of leaves the ordered patterning of vascular bundles is replaced by a continuous vascular cambium undergoing periclinal divisions to produce radial files of xylem and phloem.Interfascicular cambium is extensively formed/developed between the vascular bundles and the area normally occupied by the interfascicular parenchyma cells is replaced by vascular tissues. Continuous phloem tissue consisting of several layers of sieve tubes and companion cells encircles the vascular cambium in hca2. The vascular tissue in the hypocotyls and roots of hca2 seedlings exhibit a WT phenotye. 13029,15614,15241,13019,15455,11948,7984 RNA polymerase II, Rpb4, core protein,At5g62950 (RNA polymerase II, Rpb4, core protein) (Uncharacterized protein At5g62950) integral component of membrane [GO:0016021]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleotide binding [GO:0000166]; transcription, DNA-templated [GO:0006351],DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleotide binding [GO:0000166]; transcription, DNA-templated [GO:0006351],DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleotide binding [GO:0000166]; transcription initiation from RNA polymerase III promoter [GO:0006384],catalytic activity [GO:0003824]; nucleotide binding [GO:0000166]; cellular metabolic process [GO:0044237] locus:504955773;,locus:2170768; AT3G28956,AT5G62950 RNA polymerase III subunit Expressed protein (Os12g0488800 protein) (cDNA clone:002-107-H12, full insert sequence) Q2QQM6 Q2QQM6_ORYSJ LOC_Os12g30510 Os12g0488800 OSNPB_120488800 ENOG411E5ZS ATX1,CCH Q94BT9,O82089,A0A1I9LNC0 ATOX1_ARATH,CCH_ARATH,A0A1I9LNC0_ARATH Copper transport protein ATX1 (Copper chaperone ATX1),Copper transport protein CCH (Copper chaperone CCH),Copper chaperone DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased sensitivity to excess of copper. {ECO:0000269|PubMed:22555879, ECO:0000269|PubMed:22899077}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22555879}. FUNCTION: Plays an important role in copper homeostasis by conferring tolerance to excess of copper and subclinical copper deficiency during vegetative stage. Can complement the yeast mutants atx1 and sod1. {ECO:0000269|PubMed:17223078, ECO:0000269|PubMed:22555879}.,FUNCTION: Involved in copper homeostasis. Can complement the yeast mutants atx1 and sod1. {ECO:0000269|PubMed:11439106, ECO:0000269|PubMed:9701579}. MISCELLANEOUS: Over-expression of ATX1 confers increased tolerance to copper excess as well as subclinical copper deficiency (PubMed:22555879), but over-expressing plants are hypersensitive to severe copper deficiency (PubMed:22899077). {ECO:0000305|PubMed:22555879, ECO:0000305|PubMed:22899077}. 8158,12971,11943 Copper transport protein ATX1 (Copper chaperone ATX1),Copper transport protein CCH (Copper chaperone CCH),Copper chaperone chromatin [GO:0000785]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; copper ion transport [GO:0006825]; metal ion transport [GO:0030001],apoplast [GO:0048046]; chloroplast [GO:0009507]; copper chaperone activity [GO:0016531]; protein domain specific binding [GO:0019904]; transition metal ion binding [GO:0046914]; cellular copper ion homeostasis [GO:0006878]; copper ion transport [GO:0006825]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed in phloem (at protein level). {ECO:0000269|PubMed:11309142}. locus:2205288;,locus:2078461; AT1G66240,AT3G56240 Copper transport protein Copper chaperone homolog CCH (Os02g0530100 protein),Os08g0205400 protein (Putative copper chaperone) (cDNA, clone: J100082I23, full insert sequence) Q6H759,Q6ZCF3 Q6H759_ORYSJ,Q6ZCF3_ORYSJ P0476H10.30-1 Os02g0530100 OsJ_06993 OSNPB_020530100,Os08g0205400 OJ1119_C05.6 OsJ_26405 OSNPB_080205400 P0486F07.35 ENOG411E5ZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0709300 protein (cDNA clone:001-104-A09, full insert sequence) Q6YV09 Q6YV09_ORYSJ Os02g0709300 Os02g0709300 OJ1311_H06.1 OsJ_08103 OSJNBb0060O16.43 OSNPB_020709300 ENOG411E5ZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0104300 protein,Os01g0175100 protein (cDNA clone:J023088B10, full insert sequence) Q658D3,Q5VQZ9 Q658D3_ORYSJ,Q5VQZ9_ORYSJ P0436E04.16 Os01g0104300 OSNPB_010104300,Os01g0175100 Os01g0175100 OSJNBa0089K24.31 OSNPB_010175100 ENOG411E5ZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0304200 protein,Os05g0355800 protein,Os05g0355700 protein Q10ML6,A0A0P0WL80,A0A0P0WL71 Q10ML6_ORYSJ,A0A0P0WL80_ORYSJ,A0A0P0WL71_ORYSJ Os03g0304200 LOC_Os03g19180 OsJ_10542 OSNPB_030304200,Os05g0355800 OSNPB_050355800,Os05g0355700 OSNPB_050355700 ENOG411E5ZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CTNS NA NA NA NA NA NA NA ENOG411E5ZH DRM1,DRMH1 B9DGG8,P93017 DRM1_ARATH,DRMH1_ARATH Dormancy-associated protein 1 (AtDRM1) (Dormancy-associated protein-like 1) (AtDYL1),Dormancy-associated protein homolog 1 (Auxin-repressed protein 1) (AtARP1) (DRM1 homolog 1) (Dormancy-associated protein 2) (AtDRM2) DISRUPTION PHENOTYPE: No visible phenotype. Drm1 and drmh1 double mutants have no visible phenotype. {ECO:0000269|PubMed:23065269}. MISCELLANEOUS: Predicted to be an intrinsically disordered protein. {ECO:0000303|PubMed:24442277}. 14397,11656 Dormancy-associated protein 1 (AtDRM1) (Dormancy-associated protein-like 1) (AtDYL1),Dormancy-associated protein homolog 1 (Auxin-repressed protein 1) (AtARP1) (DRM1 homolog 1) (Dormancy-associated protein 2) (AtDRM2) multicellular organism development [GO:0007275]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to sucrose [GO:0009744],multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Isoform 1: Expressed mainly in the low bolt. Isoform 2: Expressed mainly in the low bolt. Detected in flowers. Isoform 4: Expressed mainly in the low bolt. Isoform 5: Expressed mainly in the 6 days old seedlings. Detected in 16 days old seedlings, axil, low bolt and floral samples, but only barely in leaves and top bolt. {ECO:0000269|PubMed:24442277}.,TISSUE SPECIFICITY: Expressed mainly in the low bolt. {ECO:0000269|PubMed:24442277}. locus:2032226;,locus:2057584; AT1G28330,AT2G33830 Auxin-repressed 12.5 kDa Auxin-repressed protein-like protein ARP1, putative, expressed (Os11g0671000 protein) (cDNA clone:002-157-E08, full insert sequence) (cDNA clone:006-202-H08, full insert sequence) Q2QZU5 Q2QZU5_ORYSJ Os11g0671000 LOC_Os11g44810 Os11g0671000 OsJ_34778 OSNPB_110671000 ENOG411E5ZI CB5LP O22704 CYP5F_ARATH Cytochrome B5-like protein (AtCb5LP) (Cytochrome b5 isoform F) (AtCb5-F) 13709 Cytochrome B5-like protein (AtCb5LP) (Cytochrome b5 isoform F) (AtCb5-F) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872] locus:2036536; AT1G60660 cytochrome NA NA NA NA NA NA NA ENOG411E5ZJ P42735,Q56W67,Q1PE67 CDI8_ARATH,Q56W67_ARATH,Q1PE67_ARATH Cadmium-induced protein AS8,Cadmium-induced protein (Putative membrane lipoprotein),Uncharacterized protein 18310,17967,37791 Cadmium-induced protein AS8,Cadmium-induced protein (Putative membrane lipoprotein),Uncharacterized protein integral component of membrane [GO:0016021] locus:2117179;,locus:2117194; AT4G19070,AT4G19080 Inherit from euNOG: cadmium-induced protein NA NA NA NA NA NA NA ENOG411E5ZK GG2 Q93V47 GG2_ARATH Guanine nucleotide-binding protein subunit gamma 2 (Ggamma-subunit 2) (Heterotrimeric G protein gamma-subunit 2) (AtAGG2) DISRUPTION PHENOTYPE: Hypersensitive to auxin-mediated induction of lateral roots, within the epidermis and/or cortex, attenuating basipetally transported auxin and graviresponsiveness. Enhanced sensitivity to glucose. Abnormal roots architecture. Enhanced susceptibility to necrotrophic and vascular pathogenic fungi, such as Plectosphaerella cucumerina associated with a disturbed expression of genes involved in cell wall metabolism (e.g. lower xylose content in cell walls). {ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:20862254, ECO:0000269|PubMed:21980142, ECO:0000269|PubMed:22209167}. Abnormal root architecture; Decreased basipetal auxin transport-A. Jones-2009 FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Involved in the abscisic acid (ABA) and ethylene signaling pathways. Regulates basipetal transport of auxin (IAA) in roots and hypocotyls, and thus modulates root architecture (e.g. lateral root formation). The heterotrimeric G-protein controls defense responses to necrotrophic and vascular fungi probably by modulating cell wall-related genes expression; involved in resistance to Plectosphaerella cucumerina. {ECO:0000269|PubMed:17383830, ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:20862254, ECO:0000269|PubMed:21980142, ECO:0000269|PubMed:22209167}. 11139 Guanine nucleotide-binding protein subunit gamma 2 (Ggamma-subunit 2) (Heterotrimeric G protein gamma-subunit 2) (AtAGG2) heterotrimeric G-protein complex [GO:0005834]; plasma membrane [GO:0005886]; signal transducer activity [GO:0004871]; basipetal auxin transport [GO:0010540]; G-protein coupled receptor signaling pathway [GO:0007186]; lateral root development [GO:0048527]; protein palmitoylation [GO:0018345]; protein prenylation [GO:0018342]; seed germination [GO:0009845] DEVELOPMENTAL STAGE: In seedlings, first observed at the hypocotyl/root junction but later confined to the root, including root hairs. In flowers, expressed in the apex of stamen filaments at a very early developmental stage and disappeared before the flower opened. Not present in siliques. {ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:18441222}. TISSUE SPECIFICITY: Mostly expressed in roots (excluded from the stele), seedlings (especially at the hypocotyl/root junction), floral stems, floral buds, flowers and siliques, and, to a lower extent, in leaves (restricted to guard cells). Also present in hydathods. {ECO:0000269|PubMed:11513956, ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:18441222}. locus:1005471648; AT3G22942 NA Guanine nucleotide-binding protein subunit gamma 1 (Ggamma-subunit 1) (Heterotrimeric G protein gamma-subunit 1) Q75WU1 GG1_ORYSJ RGG1 Os03g0635100 LOC_Os03g43480 OsJ_11830 FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. {ECO:0000305}. ENOG411E5ZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os01g0509900 protein (cDNA clone:002-147-E08, full insert sequence) Q5QM20 Q5QM20_ORYSJ Os01g0509900 OsJ_01964 OSNPB_010509900 P0455H03.41 P0520B06.4 ENOG411E5ZN MCT2 Q9SD91,Q1PDY7,F4K9I2 Q9SD91_ARATH,Q1PDY7_ARATH,F4K9I2_ARATH MEI2 C-terminal RRM only like 2 (Similarity to ear1 protein) (Uncharacterized protein F13G24.130),MEI2 C-terminal RRM only like 2 (RNA recognition motif-containing protein),MEI2 C-terminal RRM only like 2 32701,30066,34156 MEI2 C-terminal RRM only like 2 (Similarity to ear1 protein) (Uncharacterized protein F13G24.130),MEI2 C-terminal RRM only like 2 (RNA recognition motif-containing protein),MEI2 C-terminal RRM only like 2 RNA binding [GO:0003723] locus:2142803; AT5G07930 RNA recognition motif 2 NA NA NA NA NA NA NA ENOG411E5ZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr Os03g0169900 protein (Fragment) Q0DUS0 Q0DUS0_ORYSJ Os03g0169900 Os03g0169900 OSNPB_030169900 ENOG411E5ZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0412300 protein) Q75J02 Q75J02_ORYSJ Os03g0412300 Os03g0412300 OSJNBa0039N21.1 OSNPB_030412300 ENOG411E5ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5ZF Q9LHF4 Q9LHF4_ARATH Heavy metal transport/detoxification superfamily protein (Uncharacterized protein At3g24450) 15864 Heavy metal transport/detoxification superfamily protein (Uncharacterized protein At3g24450) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2094864; AT3G24450 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E5ZG Q9LRN9,O80535 Q9LRN9_ARATH,O80535_ARATH PHD finger family protein,At1g09520/F14J9_18 (F14J9.18 protein) 21644,28025 PHD finger family protein,At1g09520/F14J9_18 (F14J9.18 protein) metal ion binding [GO:0046872] locus:2093611;,locus:2012330; AT3G17460,AT1G09520 protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411DVNA TIF3D1 P56820,Q9FKV6 EIF3D_ARATH,Q9FKV6_ARATH Eukaryotic translation initiation factor 3 subunit D (eIF3d) (Eukaryotic translation initiation factor 3 subunit 7) (eIF-3-zeta) (p66),Eukaryotic translation initiation factor 3 subunit D (eIF3d) (Eukaryotic translation initiation factor 3 subunit 7) (eIF-3-zeta) FUNCTION: mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs. {ECO:0000255|HAMAP-Rule:MF_03003}.,FUNCTION: mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs. {ECO:0000256|HAMAP-Rule:MF_03003}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 66725,66224 Eukaryotic translation initiation factor 3 subunit D (eIF3d) (Eukaryotic translation initiation factor 3 subunit 7) (eIF-3-zeta) (p66),Eukaryotic translation initiation factor 3 subunit D (eIF3d) (Eukaryotic translation initiation factor 3 subunit 7) (eIF-3-zeta) eukaryotic translation initiation factor 3 complex [GO:0005852]; translation initiation factor activity [GO:0003743],cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; mRNA cap binding [GO:0098808]; translation initiation factor activity [GO:0003743]; cap-dependent translational initiation [GO:0002191]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446] locus:2133104;,locus:2158745; AT4G20980,AT5G44320 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit D (eIF3d) (Eukaryotic translation initiation factor 3 subunit 7) (eIF-3-zeta) Q688X1 Q688X1_ORYSJ Os05g0566500 Os05g0566500 OJ1781_H11.6 OSNPB_050566500 FUNCTION: mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs. {ECO:0000256|HAMAP-Rule:MF_03003}. ENOG411DVNI TAF2 Q8LPF0,A0A1P8API4 TAF2_ARATH,A0A1P8API4_ARATH Transcription initiation factor TFIID subunit 2 (TBP-associated factor 2) (AtTAF2),TBP-associated factor 2 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 155748,144110 Transcription initiation factor TFIID subunit 2 (TBP-associated factor 2) (AtTAF2),TBP-associated factor 2 plasmodesma [GO:0009506]; transcription factor TFIID complex [GO:0005669]; chromatin binding [GO:0003682]; metallopeptidase activity [GO:0008237]; RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly [GO:0001129]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]; zinc ion binding [GO:0008270]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944],metallopeptidase activity [GO:0008237]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2031571; AT1G73960 transcription initiation factor TFIID subunit 2-like NA NA NA NA NA NA NA ENOG411DVNN B3GALT8 Q9C809,A0A1P8AV17,F4HR76 B3GT8_ARATH,A0A1P8AV17_ARATH,F4HR76_ARATH Probable beta-1,3-galactosyltransferase 8 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) FUNCTION: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.- 44732,35154,45743 Probable beta-1,3-galactosyltransferase 8 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; beta-1,3-galactosyltransferase activity [GO:0048531]; non-classical arabinogalactan protein metabolic process [GO:0010407]; pollen exine formation [GO:0010584]; protein glycosylation [GO:0006486] locus:2006892; AT1G33430 Beta-13-galactosyltransferase Hexosyltransferase (EC 2.4.1.-) (Fragment) A0A0P0WMP1,A0A0P0WMK9 A0A0P0WMP1_ORYSJ,A0A0P0WMK9_ORYSJ Os05g0427200 OSNPB_050427200 ENOG411DVNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat domain containing protein expressed Os03g0306302 protein A0A0P0VWJ5 A0A0P0VWJ5_ORYSJ Os03g0306302 OSNPB_030306302 ENOG411DVNX CBSDUF4 Q9ZVS8 Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 (CBS domain-containing protein CBSDUF4) 54662 Putative DUF21 domain-containing protein At1g03270 (CBS domain-containing protein CBSDUF4) integral component of membrane [GO:0016021] locus:2014520; AT1G03270 DUF21 domain-containing protein Os05g0395300 protein Q6AU71 Q6AU71_ORYSJ Os05g0395300 Os05g0395300 OSJNBa0014C03.12 OSNPB_050395300 ENOG411DR68 MFL1 Q9FHX2 MFL1_ARATH Protein MITOFERRINLIKE 1, chloroplastic (AtMFL1) DISRUPTION PHENOTYPE: Reduced vegetative growth and reduced expression of ferritin. {ECO:0000269|PubMed:21371898}. Rosettes of 21 day old plants are smaller in size when grown in control conditions or under constant Fe supplement: mutant leaves in both conditions are signi& FUNCTION: Probably involved in iron transport into chloroplasts. {ECO:0000269|PubMed:21371898}. 44361 Protein MITOFERRINLIKE 1, chloroplastic (AtMFL1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; plastid [GO:0009536]; transmembrane transporter activity [GO:0022857]; iron ion transport [GO:0006826]; mitochondrial transport [GO:0006839]; response to iron ion [GO:0010039] TISSUE SPECIFICITY: Expressed in leaves, developing flowers and siliques. {ECO:0000269|PubMed:21371898}. locus:2165755; AT5G42130 mitochondrial Mitochondrial carrier protein-like (Os01g0964900 protein) Q5JJW1 Q5JJW1_ORYSJ P0458E05.12 Os01g0964900 OSNPB_010964900 ENOG411DR69 SMAX1 Q9FHH2 SMAX1_ARATH Protein SUPPRESSOR OF MAX2 1 (AtSMXL1) DISRUPTION PHENOTYPE: Low seed dormancy and short hypocotyls (PubMed:23893171). Suppresses max2 phenotypes associated with karrikin-KAI2-regulated growth (PubMed:26546447). Smax1 and smxl2 double mutants have substential reduction in hypocotyl elongation (PubMed:26754282). {ECO:0000269|PubMed:23893171, ECO:0000269|PubMed:26546447, ECO:0000269|PubMed:26754282}. FUNCTION: Probable component of a transcriptional corepressor complex that acts downstream of MAX2 to negatively regulate karrikins/strigolactone responses (PubMed:23893171, PubMed:26546447). Probable target of MAX2 during germination and seedling photomorphogenesis (PubMed:26546447). Acts probably specifically in the karrikin pathway (PubMed:26754282). {ECO:0000269|PubMed:26546447, ECO:0000269|PubMed:26754282, ECO:0000305|PubMed:23893171}. 108710 Protein SUPPRESSOR OF MAX2 1 (AtSMXL1) ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; response to karrikin [GO:0080167]; response to strigolactone [GO:1902347]; seed germination [GO:0009845]; seedling development [GO:0090351]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Peak of expression in seeds during maturation. {ECO:0000269|PubMed:23893171}. TISSUE SPECIFICITY: Highly expressed in dry seeds. Expressed in seedlings, rosette leaves and senescing leaves. Detected in roots and axillary shoots (PubMed:23893171). Expressed in the primary rosette buds and expanding leaves of adult rosettes, the vasculature of the hypocotyls, cotyledons, and mature roots, in the midvein and petioles of young leaves, the young leaf periphery, stomata, and the root caps (PubMed:26546447). {ECO:0000269|PubMed:23893171, ECO:0000269|PubMed:26546447}. locus:2172585; AT5G57710 heat shock protein-related Protein SMAX1-like Q6Z517 SMAX1_ORYSJ SMAX1L Os08g0250900 LOC_Os08g15230 OSJNBa0036E18.7 OSNPB_080250900 FUNCTION: May act downstream of MAX2 to negatively regulate karrikins/strigolactone responses. Acts probably specifically in the karrikin pathway. May function in a transcriptional corepressor complex. {ECO:0000250|UniProtKB:Q9FHH2}. ENOG411DR64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG NA NA NA NA NA NA NA ENOG411DR65 Q9FLW0 Y5241_ARATH Probable receptor-like protein kinase At5g24010 (EC 2.7.11.-) 2.7.11.- 91823 Probable receptor-like protein kinase At5g24010 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2178707; AT5G24010 receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DR66 F7K15_80 Q9LXL1 Q9LXL1_ARATH RING/FYVE/PHD-type zinc finger family protein (Uncharacterized protein At3g43230) (Uncharacterized protein F7K15_80) 52434 RING/FYVE/PHD-type zinc finger family protein (Uncharacterized protein At3g43230) (Uncharacterized protein F7K15_80) ruffle membrane [GO:0032587]; metal ion binding [GO:0046872]; phosphatidylinositol binding [GO:0035091]; regulation of ruffle assembly [GO:1900027] locus:2084716; AT3G43230 FYVE zinc finger domain containing protein expressed LAs17 Binding protein-like (Os07g0272400 protein) (cDNA clone:J033112D24, full insert sequence),Os07g0616900 protein Q6Z4J7,Q7X6I6 Q6Z4J7_ORYSJ,Q7X6I6_ORYSJ Os07g0272400 Os07g0272400 OSJNBb0002J01.20 OSNPB_070272400,P0552F09.102 B1056G08.119 Os07g0616900 OsJ_25134 OSNPB_070616900 ENOG411DR67 MPK20,MPK19 Q9SJG9,Q9LUC3,A0A1I9LQW0 MPK20_ARATH,MPK19_ARATH,A0A1I9LQW0_ARATH Mitogen-activated protein kinase 20 (AtMPK20) (MAP kinase 20) (EC 2.7.11.24),Mitogen-activated protein kinase 19 (AtMPK19) (MAP kinase 19) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24) 2.7.11.24 68775,67408,49218 Mitogen-activated protein kinase 20 (AtMPK20) (MAP kinase 20) (EC 2.7.11.24),Mitogen-activated protein kinase 19 (AtMPK19) (MAP kinase 19) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468],intracellular [GO:0005622]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707] locus:2052357;,locus:2089576; AT2G42880,AT3G14720 mitogen-activated protein kinase NA NA NA NA NA NA NA ENOG411DR60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Os02g0731700 protein (Zinc finger protein-like),Os06g0264200 protein (Zinc finger protein-like),Os02g0731700 protein (Fragment) Q6Z2L0,Q0DD26,A0A0P0VPA9 Q6Z2L0_ORYSJ,Q0DD26_ORYSJ,A0A0P0VPA9_ORYSJ P0643A10.2-1 Os02g0731700 P0617A09.30-1 OSNPB_020731700,Os06g0264200 Os06g0264200 OSJNBa0037N01.43 OSNPB_060264200,Os02g0731700 OSNPB_020731700 ENOG411DR61 MUA22.14 Q0WRF4 Q0WRF4_ARATH Nucleic acid binding / zinc ion binding protein (Uncharacterized protein At5g14140) 30103 Nucleic acid binding / zinc ion binding protein (Uncharacterized protein At5g14140) nucleic acid binding [GO:0003676] locus:2174703; AT5G14140 zinc finger protein Os11g0498400 protein (Zinc finger family protein, putative, expressed) Q0ISL4 Q0ISL4_ORYSJ Os11g0498400 LOC_Os11g30484 Os11g0498400 OSNPB_110498400 ENOG411DR62 TUBA5,TUBA1,TUBA3 B9DHQ0,P11139,Q56WH1 TBA5_ARATH,TBA1_ARATH,TBA3_ARATH Tubulin alpha-5 chain,Tubulin alpha-1 chain,Tubulin alpha-3 chain Short, thick hypocotyl-T. Hoson-2009 FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. MISCELLANEOUS: There are six genes coding for alpha-tubulin. The sequences coded by genes 3 and 5 are identical.,MISCELLANEOUS: There are six genes coding for alpha-tubulin. R-ATH-114608;R-ATH-5617833;R-ATH-6811434;R-ATH-983189; 49654,49800 Tubulin alpha-5 chain,Tubulin alpha-1 chain,Tubulin alpha-3 chain cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017],cytosol [GO:0005829]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017] locus:2010846; AT5G19780,AT1G64740,AT5G19770 Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain Tubulin alpha-1 chain P28752 TBA1_ORYSJ TUBA1 Os07g0574800 LOC_Os07g38730 OJ1562_B11.119 OJ1699_E05.40 FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. ENOG411DR63 Q9LE58 Q9LE58_ARATH Bromo-adjacent domain protein, putative (DUF3527) (Uncharacterized protein AT4g11450) 77981 Bromo-adjacent domain protein, putative (DUF3527) (Uncharacterized protein AT4g11450) locus:2123106; AT4G11450 expressed protein Expressed protein (Os03g0105800 protein) (cDNA clone:J013082I15, full insert sequence),Os10g0550750 protein,Os03g0105800 protein (Fragment) Q10T04,A0A0N7KS65,A0A0N7KGF4 Q10T04_ORYSJ,A0A0N7KS65_ORYSJ,A0A0N7KGF4_ORYSJ Os03g0105800 LOC_Os03g01550 OSNPB_030105800,Os10g0550750 OSNPB_100550750,Os03g0105800 OSNPB_030105800 ENOG411DR6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0301400 protein (Putative hAT dimerisation domain-containing protein) (cDNA clone:J033058J23, full insert sequence) Q6K4U9 Q6K4U9_ORYSJ Os02g0301400 OsJ_06371 OSJNBa0010K08.26 OSNPB_020301400 ENOG411DR6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os03g0332900 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J033118C07, full insert sequence),Os07g0681100 protein (Putative receptor-like protein kinase),Os07g0681100 protein Q10LW3,Q7XHW7,A0A0N7KP26 Q10LW3_ORYSJ,Q7XHW7_ORYSJ,A0A0N7KP26_ORYSJ LOC_Os03g21510 Os03g0332900 OsJ_10722 OSNPB_030332900,Os07g0681100 Os07g0681100 OsJ_25602 OSJNBa0008J01.18 OSNPB_070681100,Os07g0681100 OSNPB_070681100 ENOG411DR6U RRP5 F4J8K6 RRP5_ARATH rRNA biogenesis protein RRP5 (Ribosomal RNA-processing protein 5) DISRUPTION PHENOTYPE: Aborted development of female gametophytes. {ECO:0000269|PubMed:23382868}. FUNCTION: Involved in the biogenesis of ribosomal RNA (rRNA). Required for the formation of 5.8S rRNA. Required for normal development of female gametophytes. {ECO:0000269|PubMed:23382868}. R-ATH-6791226; 214238 rRNA biogenesis protein RRP5 (Ribosomal RNA-processing protein 5) nucleolus [GO:0005730]; plasma membrane [GO:0005886]; small-subunit processome [GO:0032040]; RNA binding [GO:0003723]; embryo sac development [GO:0009553]; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000466]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mRNA processing [GO:0006397]; rRNA processing [GO:0006364] TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in roots, leaves, stems and siliques. {ECO:0000269|PubMed:23382868}. locus:2088644; AT3G11964 protein RRP5 homolog Os07g0203300 protein (Fragment),Os07g0203275 protein Q0D7X0,A0A0P0X3D3 Q0D7X0_ORYSJ,A0A0P0X3D3_ORYSJ Os07g0203300 Os07g0203300 OSNPB_070203300,Os07g0203275 OSNPB_070203275 ENOG411DR6V SBT2.4 F4HYR6 SBT24_ARATH Subtilisin-like protease SBT2.4 (EC 3.4.21.-) (Protein ABNORMAL LEAF SHAPE 1) (Subtilase subfamily 2 member 4) (AtSBT2.4) DISRUPTION PHENOTYPE: Seedlings lethality when homozygous due to water loss. Mutant seedling grown under high humidity can survive and show small, crinkled cotyledons and fused leaves due to impaired cuticule formation. {ECO:0000269|PubMed:11731449}. "High penetrance of seedling lethality unless grown under high humidity; Small, crinkled cotyledons; Fused leaves; Abnormal cuticle-Y. Machida-2001" FUNCTION: Serine protease required for epidermal surface formation in embryos and juvenile plants (PubMed:11731449, PubMed:17376810, PubMed:23318634). Involved in embryonic cuticle formation downstream of BHLH95/ZOU (PubMed:23318634). {ECO:0000269|PubMed:11731449, ECO:0000269|PubMed:17376810, ECO:0000269|PubMed:23318634}. 3.4.21.- 89066 Subtilisin-like protease SBT2.4 (EC 3.4.21.-) (Protein ABNORMAL LEAF SHAPE 1) (Subtilase subfamily 2 member 4) (AtSBT2.4) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252]; cuticle development [GO:0042335] DEVELOPMENTAL STAGE: Expressed in the endosperm cells during embryo development. {ECO:0000269|PubMed:11731449}. locus:2027139; AT1G62340 Subtilase family NA NA NA NA NA NA NA ENOG411DR6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0552100 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J013170L14, full insert sequence) Q6ZI32 Q6ZI32_ORYSJ Os02g0552100 OJ1004_H01.23 OsJ_07107 OSNPB_020552100 ENOG411DR6P sks8,sks7,sks4 Q9SFF2,Q9SFF1,O65449 Q9SFF2_ARATH,Q9SFF1_ARATH,O65449_ARATH Multi-copper oxidase type I family protein (SKU5 similar 8) (T26F17.6),SKU5 similar 7 (T26F17.7),At4g22010 (Pectinesterase-like protein) (SKU5 similar 4) ARA:AT1G21850-MONOMER;,ARA:AT1G21860-MONOMER;,ARA:AT4G22010-MONOMER; 61376,60372,60456 Multi-copper oxidase type I family protein (SKU5 similar 8) (T26F17.6),SKU5 similar 7 (T26F17.7),At4g22010 (Pectinesterase-like protein) (SKU5 similar 4) plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722],membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722] locus:2036911;,locus:2201133;,locus:2120648; AT1G21850,AT1G21860,AT4G22010 L-ascorbate oxidase homolog Os06g0678800 protein (Putative PS60) (cDNA clone:J023098E17, full insert sequence),OSJNBa0084K11.18 protein (Os04g0561900 protein) (cDNA clone:J023067H20, full insert sequence) (cDNA clone:J023100A14, full insert sequence),Os07g0510833 protein,Os07g0510900 protein (Fragment) Q655H5,Q7XSQ1,A0A0P0X6Y1,A0A0P0X6G8 Q655H5_ORYSJ,Q7XSQ1_ORYSJ,A0A0P0X6Y1_ORYSJ,A0A0P0X6G8_ORYSJ Os06g0678800 Os06g0678800 OSNPB_060678800 P0003H08.1 P0710B08.42,Os04g0561900 Os04g0561900 OSJNBa0084K11.18 OSNPB_040561900,Os07g0510833 OSNPB_070510833,Os07g0510900 OSNPB_070510900 ENOG411DR6S SUFE1 Q84W65 SUFE1_ARATH SufE-like protein 1, chloroplastic/mitochondrial (Chloroplastic SufE) (CpSufE) (Protein EMBRYO DEFECTIVE 1374) (Protein SULFUR E) (AtSUFE) (Protein SULFUR E 1) (AtSUFE1) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:16437155}. Embryo defective; Preglobular / Globular-D. Meinke-2002 FUNCTION: Participates in cysteine desulfurization mediated by NFS2 in chloroplast and NIFS1 in mitochondrion (PubMed:16437155). Activates the cysteine desulfurase activity of NFS2 (PubMed:16455656). Cysteine desulfurization mobilizes sulfur from L-cysteine to yield L-alanine and supplies the inorganic sulfur for iron-sulfur (Fe-S) cluster formation. Glutaredoxins regulate SUFE1 activity by inducing its reduction and deglutathionylation (PubMed:24203231). {ECO:0000269|PubMed:16437155, ECO:0000269|PubMed:16455656, ECO:0000269|PubMed:24203231}. MISCELLANEOUS: Over-expression of SUFE1 leads to retarded growth and chlorosis. {ECO:0000305|PubMed:16437155}. PATHWAY: Cofactor biosynthesis; iron-sulfur cluster biosynthesis. 40834 SufE-like protein 1, chloroplastic/mitochondrial (Chloroplastic SufE) (CpSufE) (Protein EMBRYO DEFECTIVE 1374) (Protein SULFUR E) (AtSUFE) (Protein SULFUR E 1) (AtSUFE1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; enzyme activator activity [GO:0008047] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16455656}. locus:2131488; AT4G26500 SufE-like protein Os09g0270900 protein (Putative plastid protein SufE),Fe-S metabolism associated domain containing protein, expressed (Os03g0153400 protein) (cDNA clone:J023040L12, full insert sequence),Os09g0270900 protein (Fragment) Q6K258,Q10RM2,A0A0P0XJ88 Q6K258_ORYSJ,Q10RM2_ORYSJ,A0A0P0XJ88_ORYSJ Os09g0270900 B1012G04.31 OSNPB_090270900 P0012A04.17,Os03g0153400 LOC_Os03g05870 OSNPB_030153400,Os09g0270900 OSNPB_090270900 ENOG411DR6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411DR6I F4HUQ5,F4I2E4 F4HUQ5_ARATH,F4I2E4_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein 29897,30920 RNA-binding (RRM/RBD/RNP motifs) family protein mRNA binding [GO:0003729] locus:2037370;,locus:2011726; AT1G20880,AT1G76460 RNA recognition Os02g0714000 protein (cDNA clone:J033041C14, full insert sequence) Q0DY58 Q0DY58_ORYSJ Os02g0714000 Os02g0714000 OSNPB_020714000 ENOG411DR6J ERD2B,ERD2A,ERD2 Q8VWI1,P35402,A0A1P8AQU1 ERD2B_ARATH,ERD2A_ARATH,A0A1P8AQU1_ARATH ER lumen protein-retaining receptor B,ER lumen protein-retaining receptor A (HDEL receptor),ER lumen protein-retaining receptor FUNCTION: Determines the specificity of the luminal endoplasmic reticulum protein retention system. Required for the retro-transport of calreticulin-3 (CRT3) from the Golgi to the ER. Specifically required for elongation factor Tu receptor (EFR) function in response to the pathogen-associated molecular pattern (PAMP) elf18. {ECO:0000269|PubMed:19717464}.,FUNCTION: Required for the retention of luminal endoplasmic reticulum proteins. Determines the specificity of the luminal ER protein retention system. Also required for normal vesicular traffic through the Golgi. This receptor recognizes H-D-E-L. R-ATH-6807878;R-ATH-6811434; 25563,25204,18109 ER lumen protein-retaining receptor B,ER lumen protein-retaining receptor A (HDEL receptor),ER lumen protein-retaining receptor endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; ER retention sequence binding [GO:0046923]; defense response signaling pathway, resistance gene-independent [GO:0010204]; protein retention in ER lumen [GO:0006621]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],cis-Golgi network [GO:0005801]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; ER retention sequence binding [GO:0046923]; protein retention in ER lumen [GO:0006621]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ER retention sequence binding [GO:0046923]; protein retention in ER lumen [GO:0006621]; protein transport [GO:0015031] locus:2086954;,locus:2013683; AT3G25040,AT1G29330 Required for the retention of luminal endoplasmic reticulum proteins. Determines the specificity of the luminal ER protein retention system. Also required for normal vesicular traffic through the Golgi (By similarity) ER lumen protein-retaining receptor Q2R4I7,Q65XC2,Q7X6C1 Q2R4I7_ORYSJ,Q65XC2_ORYSJ,Q7X6C1_ORYSJ Os11g0473000 LOC_Os11g28340 Os11g0473000 OSNPB_110473000,Os05g0529300 OJ1187_E11.17 OsJ_19293 OSNPB_050529300,Os04g0376700 OSJNBa0083D01.1 OSJNBb0006N15.15 OSNPB_040376700 ENOG411DR6E PMIR1 F4K5K6 PMIR1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 DISRUPTION PHENOTYPE: Severe defects in both chloroplast and nuclear photorelocation movements resulting from the impaired regulation of chloroplast-actin filaments. {ECO:0000269|PubMed:26324877}. FUNCTION: Together with PMI1, necessary for chloroplast and nuclear photorelocation movements via the regulation of chloroplast-actin (cp-actin) filaments in pavement cells. {ECO:0000269|PubMed:26324877}. 128156 Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 cytoplasm [GO:0005737]; actin filament-based movement [GO:0030048]; chloroplast avoidance movement [GO:0009903]; chloroplast relocation [GO:0009902]; nuclear migration along microfilament [GO:0031022]; response to blue light [GO:0009637] locus:2180424; AT5G20610 NA Os01g0714100 protein Q0JJV7 Q0JJV7_ORYSJ Os01g0714100 Os01g0714100 OsJ_03237 OSNPB_010714100 ENOG411DR6F T16O11.15 Q9SIL4,O49457,Q9SIL3,Q9SR91,Q9M034,B3H6P7,F4K9C8,A8MR40,F4K9D0 Q9SIL4_ARATH,O49457_ARATH,Q9SIL3_ARATH,Q9SR91_ARATH,Q9M034_ARATH,B3H6P7_ARATH,F4K9C8_ARATH,A8MR40_ARATH,F4K9D0_ARATH At2g20550 (HSP40/DnaJ peptide-binding protein) (Putative heat shock protein),DNAJ heat shock family protein (Heat-shock protein),At2g20560/T13C7.15 (DNAJ heat shock family protein) (Putative heat shock protein),At3g08910 (DNAJ heat shock family protein) (Putative heat shock protein),DNAJ heat shock family protein (Heat shock protein 40-like) (Putative heat shock protein 40),DNAJ heat shock family protein 30702,38191,37109,35797,36971,30738,26356,31825,25904 At2g20550 (HSP40/DnaJ peptide-binding protein) (Putative heat shock protein),DNAJ heat shock family protein (Heat-shock protein),At2g20560/T13C7.15 (DNAJ heat shock family protein) (Putative heat shock protein),At3g08910 (DNAJ heat shock family protein) (Putative heat shock protein),DNAJ heat shock family protein (Heat shock protein 40-like) (Putative heat shock protein 40),DNAJ heat shock family protein unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2054799;,locus:2121368;,locus:2054809;,locus:2097638;,locus:2179127; AT2G20550,AT4G28480,AT2G20560,AT3G08910,AT5G01390 DnaJ homolog subfamily B member Heat-shock protein DnaJ (Os02g0306900 protein) (Putative DnaJ-like protein) (cDNA clone:J023053N20, full insert sequence),'putative heat shock protein, hsp40 (Os05g0562300 protein) (cDNA clone:J013101C03, full insert sequence) Q9XFD9,Q688X8 Q9XFD9_ORYSJ,Q688X8_ORYSJ Os02g0306900 Os02g0306900 OSNPB_020306900 P0543C11.34,Os05g0562300 OJ1115_B06.16 OsJ_19543 OSNPB_050562300 ENOG411DR6G MUD21.5 A0A1P8BBR1,A0A1P8BBP5,A0A1P8BBP4,F4K250 A0A1P8BBR1_ARATH,A0A1P8BBP5_ARATH,A0A1P8BBP4_ARATH,F4K250_ARATH Ran-binding protein in the microtubule-organising centre protein 71255,66528,58600,83702 Ran-binding protein in the microtubule-organising centre protein locus:2175014; AT5G66810 CTLH Expressed protein (Os10g0382300 protein) (cDNA clone:001-123-H07, full insert sequence) (cDNA clone:J023005G23, full insert sequence) Q338W3 Q338W3_ORYSJ Os10g0382300 LOC_Os10g24070 OSNPB_100382300 ENOG411DR6A Q8W1E7,A0A1P8B7F5 Q8W1E7_ARATH,A0A1P8B7F5_ARATH AT4g15420/dl3755w (UFD1 like protein) (UFD1d) (Ubiquitin fusion degradation UFD1 family protein),Ubiquitin fusion degradation UFD1 family protein 62449,76884 AT4g15420/dl3755w (UFD1 like protein) (UFD1d) (Ubiquitin fusion degradation UFD1 family protein),Ubiquitin fusion degradation UFD1 family protein ubiquitin-dependent protein catabolic process [GO:0006511] locus:2130120; AT4G15420 Ubiquitin fusion degradation protein UFD1 Os01g0534800 protein (Putative PRLI-interacting factor K) Q5JLH9 Q5JLH9_ORYSJ Os01g0534800 Os01g0534800 OJ1029_F04.28 OSNPB_010534800 ENOG411DR6B PERK3,PERK9,PERK10,PERK8,PERK2 Q1PEM5,Q9SX31,Q9C660,Q9FFW5,Q9LK03,A0A1P8ATV1,A0A1P8AP18 PERK3_ARATH,PERK9_ARATH,PEK10_ARATH,PERK8_ARATH,PERK2_ARATH,A0A1P8ATV1_ARATH,A0A1P8AP18_ARATH Proline-rich receptor-like protein kinase PERK3 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 3) (AtPERK3),Proline-rich receptor-like protein kinase PERK9 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 9) (AtPERK9),Proline-rich receptor-like protein kinase PERK10 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 10) (AtPERK10),Proline-rich receptor-like protein kinase PERK8 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 8) (AtPERK8),Proline-rich receptor-like protein kinase PERK2 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 2) (AtPERK2) (Somatic embryogenesis receptor kinase-like protein),Proline-rich extensin-like receptor kinase 10,Protein kinase superfamily protein FUNCTION: Could be involved in the negative regulation of root growth. {ECO:0000269|PubMed:25262228}. 2.7.11.1 56081,75128,80856,72390,75380,68200,70042 Proline-rich receptor-like protein kinase PERK3 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 3) (AtPERK3),Proline-rich receptor-like protein kinase PERK9 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 9) (AtPERK9),Proline-rich receptor-like protein kinase PERK10 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 10) (AtPERK10),Proline-rich receptor-like protein kinase PERK8 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 8) (AtPERK8),Proline-rich receptor-like protein kinase PERK2 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 2) (AtPERK2) (Somatic embryogenesis receptor kinase-like protein),Proline-rich extensin-like receptor kinase 10,Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase binding [GO:0019901]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase binding [GO:0019901]; structural constituent of cell wall [GO:0005199]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed at low levels in inflorescence bolt, flower buds, siliques, roots, seedlings and leaves. {ECO:0000269|PubMed:15653807}.,TISSUE SPECIFICITY: Mostly expressed in roots, inflorescence bolts and flower buds. {ECO:0000269|PubMed:15653807}.,TISSUE SPECIFICITY: Mostly expressed in inflorescence bolts and flower buds, and, to a lower extent, in roots, seedlings, leaves and siliques. {ECO:0000269|PubMed:15653807}.,TISSUE SPECIFICITY: Mostly expressed in seedlings, roots, inflorescence bolts and flower buds. {ECO:0000269|PubMed:15653807}.,TISSUE SPECIFICITY: Mostly expressed in inflorescence bolt, flower buds and siliques, and, to a lower extent, in roots, seedlings and leaves. {ECO:0000269|PubMed:15653807}. locus:2026925;,locus:2028756;,locus:2159873; AT3G24540,AT1G68690,AT1G26150,AT5G38560,AT3G24400 proline-rich receptor-like protein kinase Os01g0738300 protein (Putative receptor protein kinase PERK1) Q5JNC9 Q5JNC9_ORYSJ Os01g0738300 OSJNBb0021A09.30 OSNPB_010738300 P0638D12.4 ENOG411EIHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rpp14/Pop5 family Os04g0294625 protein A0A0P0W893 A0A0P0W893_ORYSJ Os04g0294625 OSNPB_040294625 ENOG411EMC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PBPe NA NA NA NA NA NA NA ENOG411EKB4 F13G24.260 Q9SD78 Q9SD78_ARATH Furry (Uncharacterized protein At5g08060) (Uncharacterized protein At5g08060/F13G24_260) (Uncharacterized protein F13G24.260) 15038 Furry (Uncharacterized protein At5g08060) (Uncharacterized protein At5g08060/F13G24_260) (Uncharacterized protein F13G24.260) mitochondrion [GO:0005739] locus:2142868; AT5G08060 NA Os01g0763300 protein (cDNA clone:001-121-D04, full insert sequence) (cDNA clone:J033150K13, full insert sequence) Q5JMG1 Q5JMG1_ORYSJ Os01g0763300 OsJ_03552 OSNPB_010763300 P0512C01.47 ENOG411EKB5 T8M16_140 Q9LES7 Q9LES7_ARATH Uncharacterized protein T8M16_140 37095 Uncharacterized protein T8M16_140 locus:2103615; AT3G56810 NA NA NA NA NA NA NA NA ENOG411EKB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch Os02g0805400 protein (Fragment) A0A0P0VRB2 A0A0P0VRB2_ORYSJ Os02g0805400 OSNPB_020805400 ENOG411EKBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA NA NA NA NA NA NA NA ENOG411EKBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region Os02g0104200 protein (cDNA clone:J033099F22, full insert sequence),Os06g0108500 protein,Os02g0104100 protein Q6YPG9,A0A0P0WS55,A0A0P0VDS5 Q6YPG9_ORYSJ,A0A0P0WS55_ORYSJ,A0A0P0VDS5_ORYSJ OJA1212_C06.5 Os02g0104200 OJ1212_C06.4 OsJ_05014 OSNPB_020104200,Os06g0108500 OSNPB_060108500,Os02g0104100 OSNPB_020104100 ENOG411EKBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1C9 O80603 FB1_ARATH F-box protein At1g10110 46110 F-box protein At1g10110 AT1G10110 Protein of unknown function (DUF295) Os01g0183800 protein Q0JQ35 Q0JQ35_ORYSJ Os01g0183800 Os01g0183800 OSNPB_010183800 ENOG411E1C8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatase 2C Putative protein phosphatase 2C 24 (OsPP2C24) (EC 3.1.3.16),Putative protein phosphatase 2C 23 (OsPP2C23) (EC 3.1.3.16) Q6H7J3,Q6H7J4 P2C24_ORYSJ,P2C23_ORYSJ Os02g0633900 LOC_Os02g42270 OJ1643_A10.23,Os02g0633700 LOC_Os02g42250 OJ1643_A10.22 ENOG411E1C3 COL15,COL14 Q9C7E8,O22800 COL15_ARATH,COL14_ARATH Zinc finger protein CONSTANS-LIKE 15,Zinc finger protein CONSTANS-LIKE 14 47606,44520 Zinc finger protein CONSTANS-LIKE 15,Zinc finger protein CONSTANS-LIKE 14 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2010504;,locus:2051104; AT1G28050,AT2G33500 zinc finger protein Os08g0536300 protein (Zinc-finger protein C60910-like),Os09g0509700 protein Q6Z1G2,A0A0P0XQF3 Q6Z1G2_ORYSJ,A0A0P0XQF3_ORYSJ Os08g0536300 OSJNBa0033D24.33 OSNPB_080536300 P0665C04.14,Os09g0509700 OSNPB_090509700 ENOG411E1C2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os08g0322500 protein (Putative receptor protein kinase),Os03g0400800 protein (Os03g0400850 protein) Q6ZAH4,A3AIV0 Q6ZAH4_ORYSJ,A3AIV0_ORYSJ Os08g0322500 OsJ_26875 OSNPB_080322500 P0048E12.23,Os03g0400800 Os03g0400850 OsJ_11177 OSNPB_030400800 ENOG411E1C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Laccase-6 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 6) (Diphenol oxidase 6) (Urishiol oxidase 6) Q5N7A3 LAC6_ORYSJ LAC6 Os01g0850550 LOC_Os01g63180 OsJ_003986 P0529H11.21 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411E1C0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E1C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411E1C6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0281800 protein (cDNA clone:001-116-G05, full insert sequence) Q6ENK6 Q6ENK6_ORYSJ Os09g0281800 Os09g0281800 OSNPB_090281800 P0645D04.23 ENOG411E1C5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-locus glycoprotein family NA NA NA NA NA NA NA ENOG411E1C4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os05g0468200 protein,Os05g0467900 protein,Os05g0250200 protein Q6I5S0,A0A0P0WNL5,A0A0P0WJU0 Q6I5S0_ORYSJ,A0A0P0WNL5_ORYSJ,A0A0P0WJU0_ORYSJ Os05g0468200 Os05g0468200 OJ1058_C01.5 OSNPB_050468200,Os05g0467900 OSNPB_050467900,Os05g0250200 OSNPB_050250200 ENOG411E1CK Q9C863,Q9LR35 Q9C863_ARATH,Q9LR35_ARATH At1g31460 (Uncharacterized protein At1g31460/T8E3_13) (Uncharacterized protein T8E3.13) (Vitellogenin-2 protein),F26F24.11 33311,19288 At1g31460 (Uncharacterized protein At1g31460/T8E3_13) (Uncharacterized protein T8E3.13) (Vitellogenin-2 protein),F26F24.11 plasma membrane [GO:0005886] locus:2206189;,locus:2028055; AT1G31460,AT1G23270 NA Os06g0710900 protein (cDNA clone:J033028E03, full insert sequence) Q5Z9G1 Q5Z9G1_ORYSJ Os06g0710900 OSNPB_060710900 P0655A07.31 ENOG411E1CI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0152000 protein Q9LGI5 Q9LGI5_ORYSJ Os01g0152000 Os01g0152000 OsJ_00401 OSNPB_010152000 P0009G03.26 P0030H07.5 ENOG411E1CH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prephenate dehydratase Os07g0512000 protein (Fragment) A0A0P0X6W8 A0A0P0X6W8_ORYSJ Os07g0512000 OSNPB_070512000 ENOG411E1CN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q5Z7J7 Q5Z7J7_ORYSJ Os06g0547100 prx87 OsJ_21627 OSJNBa0016D02.21 OSNPB_060547100 ENOG411E1CM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 1-4 Q942A7 GL14_ORYSJ Os01g0952100 LOC_Os01g72300 OsJ_004677 P0431G06.3 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E1CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os06g0713400 protein (cDNA clone:J023108P04, full insert sequence),Os06g0716467 protein Q5Z7U2,A0A0P0X178 Q5Z7U2_ORYSJ,A0A0P0X178_ORYSJ Os06g0713400 OJ1136_F03.4 OSNPB_060713400,Os06g0716467 OSNPB_060716467 ENOG411E1CB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q6ER37 Q6ER37_ORYSJ Os02g0242100 Os02g0242100 OSJNBa0082C09.34 OSNPB_020242100 P0503B05.5 ENOG411E1CA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os08g0196900 protein,Os08g0377100 protein,Os08g0281600 protein A0A0N7KPE8,A0A0P0XF41,A0A0N7KPK9 A0A0N7KPE8_ORYSJ,A0A0P0XF41_ORYSJ,A0A0N7KPK9_ORYSJ Os08g0196900 OSNPB_080196900,Os08g0377100 OSNPB_080377100,Os08g0281600 OSNPB_080281600 ENOG411E1CG Q8VY02 Q8VY02_ARATH Uncharacterized protein At1g77270 77488 Uncharacterized protein At1g77270 locus:2195960; AT1G77270 NA Os05g0423200 protein (cDNA clone:002-172-B05, full insert sequence),OSJNBa0055H05.9 protein (Os04g0221000 protein) (cDNA clone:J033095J08, full insert sequence),Os07g0494500 protein Q60EP5,Q7XRD3,A0A0P0X603 Q60EP5_ORYSJ,Q7XRD3_ORYSJ,A0A0P0X603_ORYSJ Os05g0423200 Os05g0423200 OJ1212_B02.4 OSNPB_050423200,Os04g0221000 Os04g0221000 OsJ_13879 OSJNBa0055H05.9 OSNPB_040221000,Os07g0494500 OSNPB_070494500 ENOG411E1CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin efflux carrier NA NA NA NA NA NA NA ENOG411E1CY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os01g0878400 protein (Putative amino acid permease 6) (cDNA clone:J033073B17, full insert sequence),Os12g0203300 protein (Fragment) Q8L4X7,A0A0P0Y806 Q8L4X7_ORYSJ,A0A0P0Y806_ORYSJ Os01g0878400 OsJ_04281 OSNPB_010878400 P0018C10.14 P0471B04.25,Os12g0203300 OSNPB_120203300 ENOG411E1CX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-Box protein OSJNBb0115I21.6 protein (Os04g0167600 protein),Os04g0167500 protein Q7XM65,A0A0P0W799 Q7XM65_ORYSJ,A0A0P0W799_ORYSJ OSJNBb0115I21.6 Os04g0167600 OSNPB_040167600,Os04g0167500 OSNPB_040167500 ENOG411E1CS Q8LFK2,Q9M9P5 Q8LFK2_ARATH,Q9M9P5_ARATH AT3G03270 protein (Adenine nucleotide alpha hydrolases-like superfamily protein) (Uncharacterized protein At3g03270),Adenine nucleotide alpha hydrolases-like superfamily protein (T17B22.4 protein) 22602,17439 AT3G03270 protein (Adenine nucleotide alpha hydrolases-like superfamily protein) (Uncharacterized protein At3g03270),Adenine nucleotide alpha hydrolases-like superfamily protein (T17B22.4 protein) cytoplasm [GO:0005737]; membrane [GO:0016020]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; protein self-association [GO:0043621]; response to stress [GO:0006950],hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2097755; AT3G03270 Universal stress protein Os02g0773200 protein (Universal stress protein / early nodulin ENOD18-like) (cDNA clone:002-143-H02, full insert sequence) Q6ZHE6 Q6ZHE6_ORYSJ Os02g0773200 Os02g0773200 OJ1611_C08.25 OsJ_08554 OSNPB_020773200 ENOG411E1CR F4JB65 F4JB65_ARATH Filament-like protein (DUF869) 81548 Filament-like protein (DUF869) plasma membrane [GO:0005886] locus:2090684; AT3G19370 Plant protein of unknown function (DUF869) NA NA NA NA NA NA NA ENOG411E1CQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tub family Tubby-like F-box protein 7 (OsTLP7) (Tubby-like F-box protein 3) (OsTLP3),Os04g0687900 protein (Fragment) Q7XSV4,A0A0P0WGN6 TLP7_ORYSJ,A0A0P0WGN6_ORYSJ TULP7 TULP3 Os04g0687900 LOC_Os04g59130 OSJNBa0039K24.2,Os04g0687900 OSNPB_040687900 ENOG411E1CP PER20 Q9SLH7,F4IJW0 PER20_ARATH,F4IJW0_ARATH Peroxidase 20 (Atperox P20) (EC 1.11.1.7) (ATP28a),Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: May be implicated in the systemic acquired resistance response via the salicylic acid signal transduction pathway. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G35380-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37978,28163 Peroxidase 20 (Atperox P20) (EC 1.11.1.7) (ATP28a),Peroxidase (EC 1.11.1.7) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979],heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2062420; AT2G35380 peroxidase NA NA NA NA NA NA NA ENOG411E1CU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Mucin-like protein (Os07g0247000 protein) (cDNA clone:J023001C01, full insert sequence) (cDNA clone:J023015N01, full insert sequence) Q6YSY6 Q6YSY6_ORYSJ Os07g0247000 OSJNBa0003K21.33 OSNPB_070247000 P0639B07.7 ENOG411E1CT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411EMCA T2E22.24,T2E22.21,T2E22.22,T2E22.25,T2E22.27 Q9LHG4,Q9LHG1,Q9LHG2,Q9C7A5,Q9LHG7,F4J9R7 Q9LHG4_ARATH,Q9LHG1_ARATH,Q9LHG2_ARATH,Q9C7A5_ARATH,Q9LHG7_ARATH,F4J9R7_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T2E22.24),At3g12470 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) (Uncharacterized protein T2E22.21),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T2E22.22),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T2E22.25),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein At3g12410) (Uncharacterized protein T2E22.27),Polynucleotidyl transferase, ribonuclease H-like superfamily protein 39720,25357,27712,27497,26481,21011 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T2E22.24),At3g12470 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) (Uncharacterized protein T2E22.21),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T2E22.22),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T2E22.25),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein At3g12410) (Uncharacterized protein T2E22.27),Polynucleotidyl transferase, ribonuclease H-like superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2092442;,locus:2092472;,locus:2092457;,locus:2092507;,locus:2092482;,locus:2092497; AT3G12440,AT3G12470,AT3G12460,AT3G12430,AT3G12410,AT3G12420 DEDDy 3'-5' exonuclease domain-containing protein NA NA NA NA NA NA NA ENOG411DSJK XRI1 Q6NLW5 XRI1_ARATH Protein XRI1 (Protein X-RAY INDUCED 1) DISRUPTION PHENOTYPE: Complete sterility. {ECO:0000269|PubMed:19187040}. abnormal segregation of the mutant allele in xri1+/- plants; xri- pollen nonviable; homozygous xri1 mutants sterile due to extensive chromosome fragmentation visible in meiocytes. Male gametophyte defective; Bicellular pollen; 50% defective seeds-C. West-2009 FUNCTION: Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis. {ECO:0000269|PubMed:19187040}. MISCELLANEOUS: The induction by X-rays is dependent on DNA damage signaling by ATM. 33719 Protein XRI1 (Protein X-RAY INDUCED 1) nucleus [GO:0005634]; DNA repair [GO:0006281]; female meiotic nuclear division [GO:0007143]; male meiotic nuclear division [GO:0007140]; pollen development [GO:0009555]; response to X-ray [GO:0010165] locus:2156519; AT5G48720 NA Os01g0918100 protein (cDNA clone:002-151-A08, full insert sequence),Os09g0309900 protein (Fragment) Q5JLD2,A0A0P0XK09 Q5JLD2_ORYSJ,A0A0P0XK09_ORYSJ Os01g0918100 Os01g0918100 OsJ_04553 OSNPB_010918100 P0413C03.32,Os09g0309900 OSNPB_090309900 ENOG411DSJE Q9C6N3 Q9C6N3_ARATH RUN/FYVE domain protein (Transposon protein, putative) 124853 RUN/FYVE domain protein (Transposon protein, putative) plasma membrane [GO:0005886] locus:2029836; AT1G27850 expressed protein Expressed protein (Os12g0239200 protein),Expressed protein (Os12g0239000 protein) Q2QV86,Q2QV87 Q2QV86_ORYSJ,Q2QV87_ORYSJ Os12g0239200 LOC_Os12g13670 Os12g0239200 OsJ_35685 OSNPB_120239200,LOC_Os12g13660 Os12g0239000 OSNPB_120239000 ENOG411DSJF Q8H181 GTL2_ARATH Trihelix transcription factor GTL2 (GT2-LIKE protein 2) (AtGTL2) (Trihelix DNA-binding protein GTL2) FUNCTION: Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. 71280 Trihelix transcription factor GTL2 (GT2-LIKE protein 2) (AtGTL2) (Trihelix DNA-binding protein GTL2) nucleus [GO:0005634]; calmodulin binding [GO:0005516]; enhancer sequence-specific DNA binding [GO:0001158]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2185319; AT5G28300 Trihelix transcription factor NA NA NA NA NA NA NA ENOG411EMPU LIF2 Q9ASP6 HNRPQ_ARATH Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) (Protein LHP1-INTERACTING FACTOR 2) DISRUPTION PHENOTYPE: Mild early flowering phenotype, reduced rosette diameter, abnormal floral developmental homeostasis and altered gynoecium growth determination associated with indeterminate ovaries growth. Production of ectopic inflorescences with severely affected flowers showing proliferation of ectopic stigmatic papillae and ovules in short-day conditions. Repression of FLC accompanied by an increase in histone H3 trimethylation on lysine 27 (H3K27me3). Altered expression of several genes, including LHP1-regulated genes (PubMed:21304947). Basal primed defense state due to changes in the basal expression of the salicylic acid (SA)- and jasmonic acid (JA)- dependent defense marker genes PR1 and PDF1.2, and altered composition of glucosinolates, a class of defense-related secondary metabolites. Reduced susceptibility to the hemi-biotrophic bacteria pathogen P.syringae and the necrotrophic ascomycete B.cinerea (PubMed:24914891). {ECO:0000269|PubMed:21304947, ECO:0000269|PubMed:24914891}. FUNCTION: Transcriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes (PubMed:27495811). Component of ribonucleosomes, which are complexes of at least 20 other different heterogenious nuclear ribonucleoproteins (hnRNP). hnRNP play an important role in processing of precursor mRNA in the nucleus (By similarity). Required during flower development and for cell fate determination (PubMed:21304947). Acts both as an antagonist and as a promoter of polycomb LHP1 gene regulation activity, depending of target genes, to regulate the transcription of stress-responsive and flowering genes (PubMed:21304947, PubMed:27495811). May regulate histone H3 trimethylation on lysine 27 (H3K27me3) (PubMed:21304947). Recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and acetylated at 'Lys-9' (H3K9ac), leading to epigenetic activation. When in complex with LHP1, recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and 'Lys-27' (H3K27me), mostly corresponding to stress-responsive genes (PubMed:27495811). May function as a suppressor of cell-autonomous immune responses involving glucosinolates, salicylic acid (SA) and jasmonic acid (JA) pathways toward pathogenic bacteria and fungi (PubMed:24914891). {ECO:0000250|UniProtKB:O60506, ECO:0000269|PubMed:21304947, ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}. R-ATH-72163;R-ATH-75094; 55136 Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) (Protein LHP1-INTERACTING FACTOR 2) cytoplasm [GO:0005737]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; mRNA binding [GO:0003729]; sequence-specific DNA binding [GO:0043565]; cellular response to jasmonic acid stimulus [GO:0071395]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; innate immune response [GO:0045087]; multicellular organism development [GO:0007275]; negative regulation of innate immune response [GO:0045824]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cell fate determination [GO:1905933]; regulation of flower development [GO:0009909]; regulation of gene expression [GO:0010468]; regulation of glucosinolate biosynthetic process [GO:0010439]; regulation of histone H3-K27 trimethylation [GO:1902464]; response to bacterium [GO:0009617]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In young plants, expressed in the distal regions of cotyledons, throughout leaves and root apical meristem, lateral root meristems and young floral buds. Strongly detected in the vascular tissues of various organs (e.g. roots, leaves, hypocotyls, sepals, petals, anther filaments) as well as in the gynophore. In the gynoecium, mainly detected in apical and basal regions as well as in the developing ovules in these regions. {ECO:0000269|PubMed:21304947}. TISSUE SPECIFICITY: Predominantly expressed in vascular and meristematic tissues. Expressed throughout development in seedlings, roots, leaves, floral buds and siliques. {ECO:0000269|PubMed:21304947}. locus:2134638; AT4G00830 RNA recognition motif (RRM)-containing protein NA NA NA NA NA NA NA ENOG411DYRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0825800 protein (Protein kinase domain containing protein, expressed) (cDNA clone:002-146-E12, full insert sequence) Q10BA4 Q10BA4_ORYSJ Os03g0825800 LOC_Os03g61060 Os03g0825800 OsJ_13191 OSNPB_030825800 ENOG411DYRS Q8GYI6 Q8GYI6_ARATH Peptidase C13 family (Putative GPI-anchor transamidase) 44543 Peptidase C13 family (Putative GPI-anchor transamidase) endoplasmic reticulum [GO:0005783]; GPI-anchor transamidase complex [GO:0042765]; GPI-anchor transamidase activity [GO:0003923]; peptidase activity [GO:0008233]; attachment of GPI anchor to protein [GO:0016255]; protein localization to cell surface [GO:0034394]; stomatal complex patterning [GO:0010375] locus:2025590; AT1G08750 Gpi-anchor Os02g0219400 protein (Putative GPI-anchor transamidase) (cDNA clone:J023126A08, full insert sequence) Q6Z6K3 Q6Z6K3_ORYSJ Os02g0219400 OsJ_05916 OSNPB_020219400 P0027A02.26 ENOG411DYRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin assembly protein NA NA NA NA NA NA NA ENOG411DYRP CRC,CRB,CRA1,CRD,CRU3 Q96318,P15456,P15455,Q9ZWA9,A0A1P8B543,F4K8S2,F4JLA9 CRU3_ARATH,CRU2_ARATH,CRU1_ARATH,CRU4_ARATH,A0A1P8B543_ARATH,F4K8S2_ARATH,F4JLA9_ARATH 12S seed storage protein CRC (Cruciferin 3) (AtCRU3) (Cruciferin C) (Legumin-type globulin Cruciferin1) (Legumin-type globulin storage protein CRU1) [Cleaved into: 12S seed storage protein CRC alpha chain (12S seed storage protein CRC acidic chain); 12S seed storage protein CRC beta chain (12S seed storage protein CRC basic chain)],12S seed storage protein CRB (Cruciferin 2) (AtCRU2) (Cruciferin B) (Legumin-type globulin storage protein CRU2) [Cleaved into: 12S seed storage protein CRB alpha chain (12S seed storage protein CRB acidic chain); 12S seed storage protein CRB beta chain (12S seed storage protein CRB basic chain)],12S seed storage protein CRA1 (Cruciferin 1) (AtCRU1) (Cruciferin A1) (Legumin-type globulin storage protein CRA1) [Cleaved into: 12S seed storage protein CRA1 alpha chain (12S seed storage protein CRA1 acidic chain); 12S seed storage protein CRA1 beta chain (12S seed storage protein CRA1 basic chain)],12S seed storage protein CRD (Cruciferin D) (Legumin-type globulin storage protein CRD) [Cleaved into: 12S seed storage protein CRD alpha chain (12S seed storage protein CRD acidic chain); 12S seed storage protein CRD beta chain (12S seed storage protein CRD basic chain)],Cruciferin 3,RmlC-like cupins superfamily protein FUNCTION: Seed storage protein.,FUNCTION: Seed storage protein. {ECO:0000256|RuleBase:RU003681}. 58235,50558,52595,49675,41973,31645,50062 12S seed storage protein CRC (Cruciferin 3) (AtCRU3) (Cruciferin C) (Legumin-type globulin Cruciferin1) (Legumin-type globulin storage protein CRU1) [Cleaved into: 12S seed storage protein CRC alpha chain (12S seed storage protein CRC acidic chain); 12S seed storage protein CRC beta chain (12S seed storage protein CRC basic chain)],12S seed storage protein CRB (Cruciferin 2) (AtCRU2) (Cruciferin B) (Legumin-type globulin storage protein CRU2) [Cleaved into: 12S seed storage protein CRB alpha chain (12S seed storage protein CRB acidic chain); 12S seed storage protein CRB beta chain (12S seed storage protein CRB basic chain)],12S seed storage protein CRA1 (Cruciferin 1) (AtCRU1) (Cruciferin A1) (Legumin-type globulin storage protein CRA1) [Cleaved into: 12S seed storage protein CRA1 alpha chain (12S seed storage protein CRA1 acidic chain); 12S seed storage protein CRA1 beta chain (12S seed storage protein CRA1 basic chain)],12S seed storage protein CRD (Cruciferin D) (Legumin-type globulin storage protein CRD) [Cleaved into: 12S seed storage protein CRD alpha chain (12S seed storage protein CRD acidic chain); 12S seed storage protein CRD beta chain (12S seed storage protein CRD basic chain)],Cruciferin 3,RmlC-like cupins superfamily protein protein storage vacuole [GO:0000326]; nutrient reservoir activity [GO:0045735]; cellular response to abscisic acid stimulus [GO:0071215]; response to abscisic acid [GO:0009737]; response to cytokinin [GO:0009735]; seed maturation [GO:0010431],protein storage vacuole [GO:0000326]; nutrient reservoir activity [GO:0045735]; cellular response to abscisic acid stimulus [GO:0071215]; response to abscisic acid [GO:0009737]; seed maturation [GO:0010431],protein storage vacuole [GO:0000326]; nutrient reservoir activity [GO:0045735]; seed maturation [GO:0010431],nutrient reservoir activity [GO:0045735] DEVELOPMENTAL STAGE: Detected in siliques at nucleotide level from 6 days post anthesis (dpa) to 17 dpa. First observed in siliques at protein level 12 dpa and accumulates progressively as native isoforms or proteolytic fragments during the last week of seed maturation/desiccation. Present in dry seeds, but disappears during their germination (at protein level). {ECO:0000269|PubMed:17562289, ECO:0000269|PubMed:7827492, ECO:0000269|Ref.10}.,DEVELOPMENTAL STAGE: Detected in siliques at nucleotide level from 6 days post anthesis (dpa) to 17 dpa. First observed in siliques at protein level 12 dpa and accumulates progressively as native isoforms or proteolytic fragments during the last week of seed maturation/desiccation. Present in dry seeds, but disappears during their germination (at protein level). {ECO:0000269|PubMed:17562289, ECO:0000269|Ref.1}.,DEVELOPMENTAL STAGE: Detected in siliques at nucleotide level from 6 days post anthesis (dpa) to 17 dpa. First observed in siliques at protein level 15 dpa and accumulates progressively as native isoforms or proteolytic fragments during the last week of seed maturation/desiccation. Present in dry seeds, essentially in cotyledons and hypocotyls, but disappears during their germination (at protein level). {ECO:0000269|PubMed:17562289, ECO:0000269|Ref.1}.,DEVELOPMENTAL STAGE: First observed in siliques 15 days post anthesis and accumulates progressively as native isoforms or proteolytic fragments during the last week of seed maturation/desiccation. Present in dry seeds, but disappears during their germination (at protein level). {ECO:0000269|PubMed:17562289}. TISSUE SPECIFICITY: Accumulates in seeds 8 days after anthesis. {ECO:0000269|PubMed:12417707, ECO:0000269|PubMed:17562289}. locus:2121308;,locus:2024234;,locus:2167654;,locus:2024219; AT4G28520,AT1G03880,AT5G44120,AT1G03890 seed storage protein Glutelin type-A 1 (Glutelin type I) [Cleaved into: Glutelin type-A 1 acidic chain; Glutelin type-A 1 basic chain],Glutelin type-A 2 (Glutelin type II) [Cleaved into: Glutelin type-A 2 acidic chain; Glutelin type-A 2 basic chain],Glutelin type-D 1 [Cleaved into: Glutelin type-D 1 acidic chain; Glutelin type-D 1 basic chain],Glutelin type-B 2 (Glutelin type-B 7) [Cleaved into: Glutelin type-B 2 acidic chain; Glutelin type-B 2 basic chain],Glutelin type-B 5 [Cleaved into: Glutelin type-B 5 acidic chain; Glutelin type-B 5 basic chain],Glutelin type-A 3 [Cleaved into: Glutelin type-A 3 acidic chain; Glutelin type-A 3 basic chain],Glutelin type-B 1 [Cleaved into: Glutelin type-B 1 acidic chain; Glutelin type-B 1 basic chain],Glutelin type-B 4 [Cleaved into: Glutelin type-B 4 acidic chain; Glutelin type-B 4 basic chain],Os08g0127900 protein (Putative early embryogenesis protein) (cDNA clone:001-117-E07, full insert sequence) (cDNA clone:002-130-H05, full insert sequence),Glutelin (Os02g0453600 protein),Glutelin (Os02g0242600 protein),Glutelin (Glutelin type-B) (Os02g0248800 protein) (cDNA, clone: J075105H10, full insert sequence),Os02g0456100 protein,Os01g0761800 protein (Fragment) P07728,P07730,Q6K508,Q02897,Q6ERU3,Q09151,P14323,P14614,Q6ZK46,A1YQH2,Q6ESW6,Q6T725,A0A0P0VIM4,A0A0P0V8F8 GLUA1_ORYSJ,GLUA2_ORYSJ,GLUD1_ORYSJ,GLUB2_ORYSJ,GLUB5_ORYSJ,GLUA3_ORYSJ,GLUB1_ORYSJ,GLUB4_ORYSJ,Q6ZK46_ORYSJ,A1YQH2_ORYSJ,Q6ESW6_ORYSJ,Q6T725_ORYSJ,A0A0P0VIM4_ORYSJ,A0A0P0V8F8_ORYSJ GLUA1 GLUA-1 Os01g0762500 LOC_Os01g55690 P0460E08.38 P0512C01.36,GLUA2 GLUA-2 GT1 Os10g0400200 LOC_Os10g26060 OSJNBa0050N08.16,GLUD1 GLUD-1 Os02g0249000 LOC_Os02g15090 OsJ_06077 OSJNBa0011N12.22,GLUB2 GLUB-2 GluB-7 GLUB7 Os02g0249600 LOC_Os02g15150 OSJNBa0011N12.30,GLUB5 GLUB-5 Os02g0268100 LOC_Os02g16820 P0693E08.14,GLUA3 GLUA-3 GT22 GT3 Os03g0427300 LOC_Os03g31360 OSJNBa0083F15.19,GluB1-A GluB-1 Os02g0249800 LOC_Os02g15169 OJ1113_G05.6 OSJNBa0011N12.36; GLUB1-B GLUB-1 Os02g0249900 LOC_Os02g15178 OJ1113_G05.4 OSJNBa0011N12.34,GLUB4 GLUB-4 Os02g0268300 LOC_Os02g16830 P0693E08.16,Os08g0127900 Os08g0127900 OJ1163_G08.32 OSNPB_080127900,Os02g0453600 OSNPB_020453600,Os02g0242600 OsJ_06044 OSNPB_020242600 P0503B05.14,GluB Os02g0248800 OSJNBa0011N12.20 OSNPB_020248800,Os02g0456100 OSNPB_020456100,Os01g0761800 OSNPB_010761800 FUNCTION: Seed storage protein.,FUNCTION: Seed storage protein. {ECO:0000269|PubMed:18980953}.,FUNCTION: Seed storage protein. {ECO:0000256|RuleBase:RU003681}. ENOG411DYRZ Q9C6E6,O82185,Q9SKI5,A0A1P8B0U6,F4JZU9 Q9C6E6_ARATH,O82185_ARATH,Q9SKI5_ARATH,A0A1P8B0U6_ARATH,F4JZU9_ARATH General transcription factor 2-related zinc finger protein (Uncharacterized protein T32G9.31),Ac-like transposase (HAT family dimerization domain-containing protein),HAT family dimerization domain-containing protein,General transcription factor 2-related zinc finger protein 53068,19948,68069,21681,18396 General transcription factor 2-related zinc finger protein (Uncharacterized protein T32G9.31),Ac-like transposase (HAT family dimerization domain-containing protein),HAT family dimerization domain-containing protein,General transcription factor 2-related zinc finger protein cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; multicellular organism development [GO:0007275],nucleic acid binding [GO:0003676]; protein dimerization activity [GO:0046983],cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; multicellular organism development [GO:0007275] locus:2203289;,locus:2051900;,locus:2054567;,locus:504954895; AT1G35150,AT2G19960,AT2G06500,AT5G35475 Inherit from euNOG: to zinc finger MYM domain containing 1 NA NA NA NA NA NA NA ENOG411DYRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os09g0458100 protein (Putative xyloglucan fucosyltransferase) (cDNA clone:002-138-B10, full insert sequence) Q67TZ7 Q67TZ7_ORYSJ Os09g0458100 B1045B05.16 OsJ_29634 OSNPB_090458100 ENOG411DYRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os08g0200600 protein (Putative NAC domain protein NAC1) (cDNA clone:J013036M14, full insert sequence),Os08g0200600 protein (Fragment) Q6Z1A3,A0A0N7KPF3 Q6Z1A3_ORYSJ,A0A0N7KPF3_ORYSJ OSJNBa0073I05.109-1 P0556A11.29-1 Os08g0200600 OSNPB_080200600,Os08g0200600 OSNPB_080200600 ENOG411DYRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (NBS-LRR type protein) (Os11g0224900 protein) Q53P15 Q53P15_ORYSJ Os11gRGA3 LOC_Os11g11770 Os11g0224900 OSNPB_110224900 ENOG411DYRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pfkB family carbohydrate kinase NA NA NA NA NA NA NA ENOG411DYRM A_TM021B04.14 O04646 O04646_ARATH A_TM021B04.14 protein (Uncharacterized protein At5g27280) (Zim17-type zinc finger protein) 23318 A_TM021B04.14 protein (Uncharacterized protein At5g27280) (Zim17-type zinc finger protein) mitochondrion [GO:0005739]; chaperone binding [GO:0051087]; zinc ion binding [GO:0008270]; protein folding [GO:0006457]; protein import into mitochondrial matrix [GO:0030150]; protein stabilization [GO:0050821] locus:2181291; AT5G27280 DNL zinc finger domain containing protein Os06g0724400 protein Q5Z992 Q5Z992_ORYSJ Os06g0724400 OSNPB_060724400 P0535F09.35 P0548E04.2 ENOG411DYRK ALDH6B2 Q0WM29,A8MQR6,A8MQH4 MMSA_ARATH,A8MQR6_ARATH,A8MQH4_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (MM-ALDH) (MMSDH) (Malonate-semialdehyde dehydrogenase [acylating]) (EC 1.2.1.27) (Aldehyde dehydrogenase family 6 member B2),Aldehyde dehydrogenase 6B2 ARA:AT2G14170-MONOMER; R-ATH-70895; 1.2.1.27 65927,53406,64700 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (MM-ALDH) (MMSDH) (Malonate-semialdehyde dehydrogenase [acylating]) (EC 1.2.1.27) (Aldehyde dehydrogenase family 6 member B2),Aldehyde dehydrogenase 6B2 mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; methylmalonate-semialdehyde dehydrogenase (acylating) activity [GO:0004491]; response to oxidative stress [GO:0006979],methylmalonate-semialdehyde dehydrogenase (acylating) activity [GO:0004491] locus:2059456; AT2G14170 methylmalonate-semialdehyde dehydrogenase Methylmalonate semi-aldehyde dehydrogenase (Os07g0188800 protein) (cDNA clone:J023108H13, full insert sequence),Os07g0188800 protein (Fragment) Q6Z4E4,A0A0P0X3Y0 Q6Z4E4_ORYSJ,A0A0P0X3Y0_ORYSJ Os07g0188800 OSJNBb0002L09.9 OSJNBb0084L07.21 OSNPB_070188800,Os07g0188800 OSNPB_070188800 ENOG411DYRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os01g0343100 protein (cDNA, clone: J065039P06, full insert sequence),Os07g0180300 protein B7F8G1,Q6ZLC6 B7F8G1_ORYSJ,Q6ZLC6_ORYSJ Os01g0343100 Os01g0343100 OSNPB_010343100,Os07g0180300 OJ1014_E09.20 OsJ_23323 OSNPB_070180300 ENOG411DYRH KLCR1 O81629 KLCR1_ARATH Protein KINESIN LIGHT CHAIN-RELATED 1 66281 Protein KINESIN LIGHT CHAIN-RELATED 1 cytoplasm [GO:0005737]; microtubule [GO:0005874]; plasma membrane [GO:0005886] locus:2123411; AT4G10840 Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DYR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposon protein Os05g0485150 protein A0A0P0WNP2 A0A0P0WNP2_ORYSJ Os05g0485150 OSNPB_050485150 ENOG411DYR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0058K23.8 protein (Os04g0618950 protein) Q7XTU4 Q7XTU4_ORYSJ Os04g0618950 Os04g0618950 OSJNBa0058K23.8 OSNPB_040618950 ENOG411DYR4 SNX1 Q9FG38 SNX1_ARATH Sorting nexin 1 (AtSNX1) (Vacuolar protein sorting-associated protein 5 homolog) DISRUPTION PHENOTYPE: Shorter primary roots, fewer secondary roots and an altered root gravitropic response. Accumulation of storage protein globulin 12S in dry seeds. {ECO:0000269|PubMed:16936718}. FUNCTION: Plays a role in vesicular protein sorting. Acts at the crossroads between the secretory and endocytic pathways. Is involved in the endosome to vacuole protein transport via its interaction with the BLOS1/2 proteins and, as component of the membrane-associated retromer complex, is also involved in endosome-to-Golgi retrograde transport. Required for the auxin-carrier protein PIN2 sorting to the lytic vacuolar pathway and the trafficking of several plasma membrane proteins. Also involved in the efficient sorting of seed storage protein globulin 12S. {ECO:0000269|PubMed:16936718, ECO:0000269|PubMed:17999644, ECO:0000269|PubMed:19004783, ECO:0000269|PubMed:20971704, ECO:0000269|PubMed:21156856}. 46523 Sorting nexin 1 (AtSNX1) (Vacuolar protein sorting-associated protein 5 homolog) cytosol [GO:0005829]; endosome [GO:0005768]; extrinsic component of membrane [GO:0019898]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; multivesicular body [GO:0005771]; retromer complex [GO:0030904]; phosphatidylinositol binding [GO:0035091]; auxin homeostasis [GO:0010252]; endocytosis [GO:0006897]; endosome to lysosome transport [GO:0008333]; Golgi to vacuole transport [GO:0006896]; positive gravitropism [GO:0009958]; protein targeting to vacuole [GO:0006623]; root development [GO:0048364]; vesicle organization [GO:0016050] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:21156856}. locus:2152850; AT5G06140 sorting nexin Os01g0862300 protein (Putative sorting nexin 1) (cDNA clone:J013066C10, full insert sequence) (cDNA clone:J033089O16, full insert sequence) Q5N7G9 Q5N7G9_ORYSJ Os01g0862300 Os01g0862300 OSNPB_010862300 P0423B08.9 P0679C12.50 ENOG411DYR3 EXPA20 Q9SZM1 EXP20_ARATH Expansin-A20 (AtEXPA20) (Alpha-expansin-20) (At-EXP20) (AtEx20) (Ath-ExpAlpha-1.23) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 27857 Expansin-A20 (AtEXPA20) (Alpha-expansin-20) (At-EXP20) (AtEx20) (Ath-ExpAlpha-1.23) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664]; response to karrikin [GO:0080167]; syncytium formation [GO:0006949] locus:2120943; AT4G38210 syncytium formation Expansin-A16 (Alpha-expansin-16) (OsEXP16) (OsEXPA16) (OsaEXPa1.27) Q69XV9 EXP16_ORYSJ EXPA16 EXP16 Os06g0621900 LOC_Os06g41700 P0040H10.29 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DYR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q0D624 Q0D624_ORYSJ Os07g0516600 Os07g0516600 OSNPB_070516600 ENOG411DYR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411DYR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 protein expressed Os12g0122400 protein,Hexosyltransferase (EC 2.4.1.-) Q0IQG7,Q2RB54 Q0IQG7_ORYSJ,Q2RB54_ORYSJ Os12g0122400 Os12g0122400 OSNPB_120122400,LOC_Os11g03160 Os11g0124900 OsJ_32774 OSNPB_110124900 ENOG411EMCQ Q9FGK4,Q8VYH6 B561J_ARATH,B651B_ARATH Cytochrome b561 and DOMON domain-containing protein At5g47530 (Protein b561A.tha10),Cytochrome b561 and DOMON domain-containing protein At4g17280 (Protein b561A.tha2) FUNCTION: May act as a catecholamine-responsive trans-membrane electron transporter. {ECO:0000269|PubMed:15022831}. 42998,43679 Cytochrome b561 and DOMON domain-containing protein At5g47530 (Protein b561A.tha10),Cytochrome b561 and DOMON domain-containing protein At4g17280 (Protein b561A.tha2) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2168948;,locus:2130789; AT5G47530,AT4G17280 auxin-responsive protein NA NA NA NA NA NA NA ENOG411EGP8 A0A1P8AWR2,F4IBN6 A0A1P8AWR2_ARATH,F4IBN6_ARATH Chaperone DnaJ-domain superfamily protein 11104,14676 Chaperone DnaJ-domain superfamily protein locus:2030352; AT1G72070 DnaJ domain NA NA NA NA NA NA NA ENOG411EGP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EGP2 CLE14 Q3ECJ5 CLE14_ARATH CLAVATA3/ESR (CLE)-related protein 14 [Cleaved into: CLE14p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. Acts as an elicitor of the root meristem differentiation through the CLV2/CRN complex signaling pathway (PubMed:20697738, PubMed:28586647). Inhibits irreversibly root growth by reducing cell division rates in the root apical meristem (PubMed:20697738, PubMed:28586647). {ECO:0000269|PubMed:16407446, ECO:0000269|PubMed:16902140, ECO:0000269|PubMed:20697738, ECO:0000269|PubMed:28586647}. 9037 CLAVATA3/ESR (CLE)-related protein 14 [Cleaved into: CLE14p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in seedlings and leaves. {ECO:0000269|PubMed:12602871}. locus:504956189; AT1G63245 clavata3 esr-related 14 NA NA NA NA NA NA NA ENOG411EGP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of NA NA NA NA NA NA NA ENOG411EGP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EGPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EGPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex involved in cytoplasmic mRNA turnover. PAN specifically shortens poly(A) tails of RNA when the poly(A) stretch is bound by polyadenylate-binding protein pab1. Deadenylation of the 3'-tail to a length that is too short to bind pab1 induces mRNA decay. May also be involved in post- transcriptional maturation of mRNA poly(A) tails. pan3 acts as a positive regulator for PAN activity recruiting pan2 to mRNA via its interaction with pab1 (By similarity) NA NA NA NA NA NA NA ENOG411EGPZ A0A1P8AR38,Q9SH37,Q9SH38 A0A1P8AR38_ARATH,Q9SH37_ARATH,Q9SH38_ARATH Uncharacterized protein,F2K11.11,F2K11.10 (Hydroxyproline-rich glycoprotein family protein) 53768,51047,64107 Uncharacterized protein,F2K11.11,F2K11.10 (Hydroxyproline-rich glycoprotein family protein) pollen tube growth [GO:0009860],nuclear pore cytoplasmic filaments [GO:0044614]; nuclear localization sequence binding [GO:0008139]; nucleocytoplasmic transporter activity [GO:0005487]; RNA binding [GO:0003723]; structural constituent of nuclear pore [GO:0017056]; posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000973]; protein import into nucleus [GO:0006606]; RNA export from nucleus [GO:0006405]; telomere tethering at nuclear periphery [GO:0034398] locus:2031387;,locus:2031351; AT1G63530,AT1G63540 NA NA NA NA NA NA NA NA ENOG411EGPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EGPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0019D11.18 protein (Os04g0521700 protein) Q7XUA7 Q7XUA7_ORYSJ Os04g0521700 OSJNBa0019D11.18 OSNPB_040521700 ENOG411EGPS Q1PEW8,Q058G7,Q9C8W0,A0A1P8BD70 FB127_ARATH,Q058G7_ARATH,Q9C8W0_ARATH,A0A1P8BD70_ARATH F-box protein At2g35280,At3g30430 (F-box family protein),F-box family protein (Uncharacterized protein T22A15.5),Nucleic acid-binding, OB-fold-like protein 18523,12716,8657,22218 F-box protein At2g35280,At3g30430 (F-box family protein),F-box family protein (Uncharacterized protein T22A15.5),Nucleic acid-binding, OB-fold-like protein locus:2063454;,locus:2093325;,locus:2199076; AT2G35280,AT3G30430,AT1G36030 f-box family NA NA NA NA NA NA NA ENOG411EGPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGPV Q93WI1 Q93WI1_ARATH At1g32920/F9L11_25 8399 At1g32920/F9L11_25 response to wounding [GO:0009611] locus:2037996; AT1G32920 NA NA NA NA NA NA NA NA ENOG411EGPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA function NA NA NA NA NA NA NA ENOG411EGPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA His Kinase A (phospho-acceptor) domain NA NA NA NA NA NA NA ENOG411EGPI F24M12.240 Q9SD26 Q9SD26_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein F24M12.240) 12311 SAUR-like auxin-responsive protein family (Uncharacterized protein F24M12.240) response to auxin [GO:0009733] locus:2080983; AT3G51200 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EGPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: LSM domain NA NA NA NA NA NA NA ENOG411EGPK F4IR57,B3H765,A0A1I9LMA0,A0A1I9LM99,B6EUB2,F4J9D4,B3H5J0 F4IR57_ARATH,B3H765_ARATH,A0A1I9LMA0_ARATH,A0A1I9LM99_ARATH,B6EUB2_ARATH,F4J9D4_ARATH,B3H5J0_ARATH Ypt/Rab-GAP domain of gyp1p superfamily protein R-ATH-8854214; 83479,83891,77845,83792,79707,81099,83676 Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2058228;,locus:2097573; AT2G43490,AT3G59570 RabGAP TBC domain-containing protein NA NA NA NA NA NA NA ENOG411EGPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGPN RGF8 Q9SI57 RGF8_ARATH Probable root meristem growth factor 8 (AtRGF8) FUNCTION: May be involved in maintaining the postembryonic root stem cell niche. {ECO:0000250, ECO:0000269|PubMed:20798316}. 13969 Probable root meristem growth factor 8 (AtRGF8) extracellular region [GO:0005576]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154] locus:2056805; AT2G03830 NA NA NA NA NA NA NA NA ENOG411EGPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial regulatory helix-turn-helix protein lysR family NA NA NA NA NA NA NA ENOG411EGPB SPH14 Q8GX02 SPH14_ARATH S-protein homolog 14 16654 S-protein homolog 14 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:1005716724; AT1G09245 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EGPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411DW6R Q9FVR9 Q9FVR9_ARATH FAD/NAD(P)-binding oxidoreductase family protein (Uncharacterized protein At1g57770) (Uncharacterized protein F12K22.18) ARA:AT1G57770-MONOMER; 61724 FAD/NAD(P)-binding oxidoreductase family protein (Uncharacterized protein At1g57770) (Uncharacterized protein F12K22.18) chloroplast [GO:0009507]; intracellular [GO:0005622]; oxidoreductase activity [GO:0016491] locus:2009395; AT1G57770 Flavin containing amine oxidoreductase Os03g0841900 protein A0A0P0W5A9 A0A0P0W5A9_ORYSJ Os03g0841900 OSNPB_030841900 ENOG411EMEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1-deoxy-D-xylulose-5-phosphate synthase Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (EC 2.2.1.7) Q6YU51 DXS2_ORYSJ Os07g0190000 LOC_Os07g09190 OsJ_23394 OSJNBb0002L09.31 OSJNBb0003E08.7 FUNCTION: Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development (By similarity). {ECO:0000250}. ENOG411EMEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1-deoxy-D-xylulose-5-phosphate synthase chloroplastic-like NA NA NA NA NA NA NA ENOG411DZHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0470000 protein (Putative PPR protein) Q6K7A0 Q6K7A0_ORYSJ Os02g0470000 Os02g0470000 OJ1371_D04.12 OSNPB_020470000 P0403C01.4 ENOG411DZHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein phosphatase 2A regulatory B subunit (B56 family) Os01g0178400 protein (Fragment) Q0JQ73 Q0JQ73_ORYSJ Os01g0178400 Os01g0178400 OSNPB_010178400 ENOG411DZHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0768000 protein (RING zinc finger protein-like) (cDNA clone:002-113-D06, full insert sequence) Q6ZGK4 Q6ZGK4_ORYSJ Os02g0768000 OJ1767_D02.8 OsJ_08517 OSNPB_020768000 ENOG411DZHM MLE2.2 Q9FMW3 Q9FMW3_ARATH Auxin-independent growth promoter-like protein (O-fucosyltransferase family protein) 62891 Auxin-independent growth promoter-like protein (O-fucosyltransferase family protein) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2167311; AT5G63390 GDP-fucose protein O-fucosyltransferase NA NA NA NA NA NA NA ENOG411DZHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDWW DEGP11,DEGP12 Q9LK71,Q9LK70 DGP11_ARATH,DGP12_ARATH Putative protease Do-like 11, mitochondrial (EC 3.4.21.-),Putative protease Do-like 12, mitochondrial (EC 3.4.21.-) FUNCTION: Putative serine protease. 3.4.21.- 63695,56188 Putative protease Do-like 11, mitochondrial (EC 3.4.21.-),Putative protease Do-like 12, mitochondrial (EC 3.4.21.-) mitochondrial membrane [GO:0031966]; serine-type endopeptidase activity [GO:0004252],mitochondrial matrix [GO:0005759]; serine-type endopeptidase activity [GO:0004252] AT3G16540,AT3G16550 degp protease NA NA NA NA NA NA NA ENOG411DSX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin adaptor complex small chain Coatomer subunit zeta-1 (Zeta-1-coat protein) (Zeta-COP 1) (Zeta1-COP) Q9MAX5 COPZ1_ORYSJ COPZ1 Os05g0461000 LOC_Os05g38610 OJ1281_H05.11 OsJ_018059 OsJ_18819 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.; FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. {ECO:0000250}. ENOG411DSX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA reductase Os08g0441500 protein (Putative cinnamoyl-CoA reductase) (cDNA clone:001-203-A12, full insert sequence) (cDNA clone:001-204-A12, full insert sequence) (cDNA clone:J023143B20, full insert sequence),Os09g0419200 protein (Putative cinnamoyl CoA reductase),Os09g0127300 protein (Putative cinnamoyl-CoA reductase) (cDNA clone:J023051O20, full insert sequence),Os09g0419200 protein (Putative cinnamoyl CoA reductase) (cDNA clone:001-043-D11, full insert sequence) Q6Z9E7,Q6ERR3,Q6K3G8,Q6ERR4 Q6Z9E7_ORYSJ,Q6ERR3_ORYSJ,Q6K3G8_ORYSJ,Q6ERR4_ORYSJ P0528B09.35-1 Os08g0441500 OSNPB_080441500,P0701F11.23-2 Os09g0419200 P0668D04.4-2 OSNPB_090419200,Os09g0127300 Os09g0127300 OJ1352_A10.23 OSNPB_090127300,P0701F11.23-1 P0668D04.4-1 Os09g0419200 OsJ_29385 OSNPB_090419200 ENOG411DSX0 Q56Y29,Q6NNH1,Q8VZN5,Q6NM24,Q9FZ74,F4HQU5,F4HQT8,F4HQU1,F4HQU2 Q56Y29_ARATH,Q6NNH1_ARATH,Q8VZN5_ARATH,Q6NM24_ARATH,Q9FZ74_ARATH,F4HQU5_ARATH,F4HQT8_ARATH,F4HQU1_ARATH,F4HQU2_ARATH At1g13480 (Uncharacterized protein At1g13480),At1g13520 (Uncharacterized protein At1g13520),Uncharacterized protein At1g13510,At1g13540,F13B4.1 protein,Uncharacterized protein 44532,44527,43738,43906,43549,43985,44095,41612,44243 At1g13480 (Uncharacterized protein At1g13480),At1g13520 (Uncharacterized protein At1g13520),Uncharacterized protein At1g13510,At1g13540,F13B4.1 protein,Uncharacterized protein locus:2009942;,locus:2010002;,locus:2009987;,locus:2009977;,locus:2010017;,locus:2009927;,locus:2009957;,locus:2009972; AT1G13480,AT1G13520,AT1G13510,AT1G13540,AT1G13530,AT1G13470,AT1G13490,AT1G13500 expressed protein Os08g0413100 protein,Os08g0412700 protein,Os08g0413500 protein (Os08g0413850 protein),Os08g0412800 protein (cDNA clone:002-150-B08, full insert sequence),Os08g0413200 protein,Os08g0413500 protein,Os08g0414000 protein,Os04g0272500 protein Q6Z561,Q6Z564,Q0J5Q1,Q6Z563,A0A0P0XFR2,A0A0P0XFM5,A0A0P0XFY9,A0A0P0W8F1 Q6Z561_ORYSJ,Q6Z564_ORYSJ,Q0J5Q1_ORYSJ,Q6Z563_ORYSJ,A0A0P0XFR2_ORYSJ,A0A0P0XFM5_ORYSJ,A0A0P0XFY9_ORYSJ,A0A0P0W8F1_ORYSJ OSJNBa0007M04.25 Os08g0413100 OSNPB_080413100,Os08g0412700 Os08g0412700 OsJ_27294 OSJNBa0007M04.20 OSNPB_080412700,Os08g0413850 Os08g0413500 OSNPB_080413850,Os08g0412800 Os08g0412800 OSJNBa0007M04.21 OSNPB_080412800,Os08g0413200 OSNPB_080413200,Os08g0413500 OSNPB_080413500,Os08g0414000 OSNPB_080414000,Os04g0272500 OSNPB_040272500 ENOG411DSX7 NPF5.1 Q8VZR7 PTR30_ARATH Protein NRT1/ PTR FAMILY 5.1 (AtNPF5.1) R-ATH-427975;R-ATH-6798695; 64824 Protein NRT1/ PTR FAMILY 5.1 (AtNPF5.1) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Expressed in flowers. Detected in stems, leaves and siliques. {ECO:0000269|PubMed:17481610}. locus:2061843; AT2G40460 peptide nitrate transporter Os05g0335800 protein Q5KQF1 Q5KQF1_ORYSJ Os05g0335800 OsJ_18107 OSJNBa0049D13.9 OSNPB_050335800 ENOG411DSX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1421) Os01g0672800 protein (Fragment) A0A0N7KDH4 A0A0N7KDH4_ORYSJ Os01g0672800 OSNPB_010672800 ENOG411DSX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411DSXK IRKI Q9LXU9 IRKI_ARATH IRK-interacting protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:15618632}. 63329 IRK-interacting protein TISSUE SPECIFICITY: Highly expressed in root tips, shoot apices and developing flowers. {ECO:0000269|PubMed:15618632}. locus:2182310; AT5G12900 expressed protein Os08g0508100 protein (cDNA, clone: J090084N03, full insert sequence) Q6YVT7 Q6YVT7_ORYSJ Os08g0508100 B1168A08.6 OSJNBb0064I19.18 OSNPB_080508100 ENOG411DSXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFs having WRKY and zinc finger domains Os03g0321700 protein (WRKY DNA binding domain containing protein, expressed) (cDNA clone:J033057D07, full insert sequence) Q10M65 Q10M65_ORYSJ LOC_Os03g20550 Os03g0321700 OsJ_10658 OSNPB_030321700 ENOG411DSXI VSR1,VSR4,VSR3 P93026,Q56ZQ3,O80977 VSR1_ARATH,VSR4_ARATH,VSR3_ARATH Vacuolar-sorting receptor 1 (AtVSR1) (BP80-like protein b) (AtBP80b) (Epidermal growth factor receptor-like protein 1) (AtELP) (AtELP1) (Spot 3 protein),Vacuolar-sorting receptor 4 (AtVSR4) (BP80-like protein a) (AtBP80a) (Epidermal growth factor receptor-like protein 2b) (AtELP2b),Vacuolar-sorting receptor 3 (AtVSR3) (BP80-like protein a') (AtBP80a') (Epidermal growth factor receptor-like protein 2a) (AtELP2a) green fluorescent seeds FUNCTION: Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. Required for the sorting of 12S globulin, 2S albumin and maybe other seed storage proteins to protein storage vacuoles (PSVs) in seeds. May also be implicated in targeting N-terminal propeptide containing proteins to lytic vacuoles. {ECO:0000269|PubMed:10871276, ECO:0000269|PubMed:14657332}.,FUNCTION: Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. {ECO:0000250}. 68992,69812,69744 Vacuolar-sorting receptor 1 (AtVSR1) (BP80-like protein b) (AtBP80b) (Epidermal growth factor receptor-like protein 1) (AtELP) (AtELP1) (Spot 3 protein),Vacuolar-sorting receptor 4 (AtVSR4) (BP80-like protein a) (AtBP80a) (Epidermal growth factor receptor-like protein 2b) (AtELP2b),Vacuolar-sorting receptor 3 (AtVSR3) (BP80-like protein a') (AtBP80a') (Epidermal growth factor receptor-like protein 2a) (AtELP2a) clathrin-coated vesicle membrane [GO:0030665]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; amino-terminal vacuolar sorting propeptide binding [GO:0009940]; calcium ion binding [GO:0005509]; Golgi to vacuole transport [GO:0006896]; protein targeting to vacuole [GO:0006623]; vacuolar transport [GO:0007034],clathrin-coated vesicle membrane [GO:0030665]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; trans-Golgi network [GO:0005802]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; protein targeting to vacuole [GO:0006623],clathrin-coated vesicle membrane [GO:0030665]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; calcium ion binding [GO:0005509]; protein targeting to vacuole [GO:0006623] TISSUE SPECIFICITY: Mostly expressed in roots and dividing cells (at protein level). Also expressed in seeds, seedlings, leaves, stems, flowers, siliques and pollen. {ECO:0000269|PubMed:10561538, ECO:0000269|PubMed:12493849, ECO:0000269|PubMed:9159954}.,TISSUE SPECIFICITY: Expressed at low levels in seeds, seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:10561538, ECO:0000269|PubMed:12493849}.,TISSUE SPECIFICITY: Expressed in seeds, seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:12493849}. locus:2085136;,locus:2046931;,locus:2046911; AT3G52850,AT2G14720,AT2G14740 vacuolar-sorting receptor Os12g0116000 protein (Vacuolar sorting receptor 1, putative, expressed) (cDNA clone:J013073B02, full insert sequence),Os11g0116550 protein,Os10g0346600 protein (Putative vacuolar sorting receptor protein homolog) (Vacuolar sorting receptor 1, putative, expressed),Os12g0116000 protein Q2QYK3,B9G923,Q339K4,A0A0P0Y6A2 Q2QYK3_ORYSJ,B9G923_ORYSJ,Q339K4_ORYSJ,A0A0P0Y6A2_ORYSJ LOC_Os12g02390 Os12g0116000 OSNPB_120116000,Os11g0116550 OsJ_32728 OSNPB_110116550,LOC_Os10g20630 Os10g0346600 OsJ_31179 OSJNBa0045C13.16 OSNPB_100346600,Os12g0116000 OSNPB_120116000 ENOG411DSXN Q9C5D7 CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) FUNCTION: Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers (By similarity). {ECO:0000250}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. ARA:AT4G26220-MONOMER;MetaCyc:AT4G26220-MONOMER; 2.1.1.104 25946 Probable caffeoyl-CoA O-methyltransferase At4g26220 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) cytosol [GO:0005829]; caffeoyl-CoA O-methyltransferase activity [GO:0042409]; metal ion binding [GO:0046872]; lignin biosynthetic process [GO:0009809] locus:2136799; AT4G26220 caffeoyl-CoA O-methyltransferase At4g26220-like NA NA NA NA NA NA NA ENOG411DSXM TOP6A Q9LZ03 TOP6A_ARATH DNA topoisomerase 6 subunit A (AtTOP6A) (EC 5.99.1.3) (Meiotic recombination protein SPO11-3) (AtSPO11-3) (Protein BRASSINOSTEROID INSENSITIVE 5) (Protein ROOT HAIRLESS 2) DISRUPTION PHENOTYPE: Plants are defective in cell elongation and show a severe dwarf phenotype. {ECO:0000269|PubMed:12401175}. Dwarf; Increased branching; Downward-bending leaves; Short petioles; Dark-grown seedlings are de-etiolated; Insensitive to brassinosteroids-J. Chory-2002 FUNCTION: Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. Involved in cell-elongation processes. {ECO:0000255|HAMAP-Rule:MF_03164, ECO:0000269|PubMed:12119417, ECO:0000269|PubMed:12401175}. 5.99.1.3 47446 DNA topoisomerase 6 subunit A (AtTOP6A) (EC 5.99.1.3) (Meiotic recombination protein SPO11-3) (AtSPO11-3) (Protein BRASSINOSTEROID INSENSITIVE 5) (Protein ROOT HAIRLESS 2) nuclear chromosome [GO:0000228]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; endodeoxyribonuclease activity, producing 3'-phosphomonoesters [GO:0016889]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; DNA catabolic process, endonucleolytic [GO:0000737]; DNA topological change [GO:0006265]; epidermal cell fate specification [GO:0009957]; meiotic DNA double-strand break formation [GO:0042138]; meiotic DNA double-strand break processing [GO:0000706]; reciprocal meiotic recombination [GO:0007131] TISSUE SPECIFICITY: Highly expressed in leaves, stems, flowers and seedlings. {ECO:0000269|PubMed:11410368}. locus:2151221; AT5G02820 topoisomerase 6 subunit Meiotic recombination protein SPO11-4 (OsSPO11-4) (OsSPO11D),Topoisomerase 6 subunit A3 (OsTOP6A3) (EC 5.99.1.3) (DNA topoisomerase 6 subunit A) (OsTOP6A) (Meiotic recombination protein SPO11-3) (OsSPO11-3) (OsSPO11C),Os02g0505232 protein Q2QM00,Q0DSV9,B9F059 SPO14_ORYSJ,TOP6A_ORYSJ,B9F059_ORYSJ SPO11-4 Os12g0622500 LOC_Os12g42760 OsJ_36918,SPO11-3 TOP6A TOP6A3 Os03g0284800 LOC_Os03g17610 OSJNBa0013D02.18,Os02g0505232 OsJ_06847 OSNPB_020505232 FUNCTION: Required for meiotic recombination. Mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. Possesses double-stranded DNA cleavage activity in vitro. {ECO:0000269|PubMed:21637817}.,FUNCTION: Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity (By similarity). {ECO:0000250}. MISCELLANEOUS: Plants silencing TPO6A1 are sterile due to defect in male meiosis. {ECO:0000305|PubMed:21637817}. ENOG411DSXC PAS1 Q7DMA9 PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1 (EC 5.2.1.8) (70 kDa peptidyl-prolyl isomerase) (FK506-binding protein 72) (AtFKBP72) (Immunophilin FKBP72) (Peptidyl-prolyl cis-trans isomerase FKBP72) (PPIase FKBP72) (Rotamase) DISRUPTION PHENOTYPE: Plants fail to develop apical hook in the dark and exhibit abnormal embryogenesis from the heart stage. Deficiency in lateral root formation and abnormal patterning of the embryo apex, which leads to defective cotyledon organogenesis like small and thick hypocotyl, finger-shaped cotyledons and small fused leaves. Ectopic cell proliferation in the presence of cytokinins. {ECO:0000269|PubMed:12857804, ECO:0000269|PubMed:16803883, ECO:0000269|PubMed:20145257}. Embryo and seedling defective-J.D. Faure-1998 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Essential protein regulating cell division, adhesion and elongation throughout the plant development and embryogenesis. Required for the spatial organization of apical meristems. Involved in the hormonal control of cell division and differentiation mediated by cytokinins and auxin. Regulates the function of NAC089 transcription factor by controlling its targeting to the nucleus upon plant cell division. Interacts with enzymes of the fatty acid elongase complex and favors the generation of very-long-chain fatty acids (VLCFAs) required for polar auxin transport and tissue patterning during plant development. {ECO:0000250, ECO:0000269|PubMed:12857804, ECO:0000269|PubMed:16803883, ECO:0000269|PubMed:20145257, ECO:0000269|PubMed:9449673, ECO:0000269|PubMed:9566922, ECO:0000269|Ref.6}. MISCELLANEOUS: 'Pasticcino' means 'small cake' in Italian. 5.2.1.8 71797 Peptidyl-prolyl cis-trans isomerase PASTICCINO1 (EC 5.2.1.8) (70 kDa peptidyl-prolyl isomerase) (FK506-binding protein 72) (AtFKBP72) (Immunophilin FKBP72) (Peptidyl-prolyl cis-trans isomerase FKBP72) (PPIase FKBP72) (Rotamase) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; auxin-activated signaling pathway [GO:0009734]; cell differentiation [GO:0030154]; chaperone-mediated protein folding [GO:0061077]; cytokinin-activated signaling pathway [GO:0009736]; embryo development ending in seed dormancy [GO:0009793]; embryonic pattern specification [GO:0009880]; establishment of cell polarity [GO:0030010]; lateral root development [GO:0048527]; response to cytokinin [GO:0009735]; root development [GO:0048364]; unidimensional cell growth [GO:0009826]; very long-chain fatty acid biosynthetic process [GO:0042761] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:9566922}. locus:2084435; AT3G54010 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q10KX6,A0A0N7KHB2 Q10KX6_ORYSJ,A0A0N7KHB2_ORYSJ Os03g0367000 LOC_Os03g25140 Os03g0367000 OsJ_10973 OSNPB_030367000,Os03g0367000 OSNPB_030367000 ENOG411DSXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1771 OSJNBa0064D20.12 protein (Os04g0442100 protein) Q7FA13 Q7FA13_ORYSJ OSJNBa0064D20.12 Os04g0442100 OsJ_14921 OSNPB_040442100 ENOG411DSXA F17J16_160 Q9SJG2,Q9LYS5,Q7Y229,F4I0Z0,A0A1P8B253 Y2296_ARATH,Q9LYS5_ARATH,Q7Y229_ARATH,F4I0Z0_ARATH,A0A1P8B253_ARATH Probable receptor-like protein kinase At2g42960 (EC 2.7.11.1),Protein kinase superfamily protein (Receptor-like protein kinase),At1g56720 (Protein kinase superfamily protein) (Uncharacterized protein At1g56720),Protein kinase superfamily protein 2.7.11.1 55188,57118,54943,52588,38941 Probable receptor-like protein kinase At2g42960 (EC 2.7.11.1),Protein kinase superfamily protein (Receptor-like protein kinase),At1g56720 (Protein kinase superfamily protein) (Uncharacterized protein At1g56720),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2045620;,locus:2077730;,locus:2027559;,locus:2012325; AT2G42960,AT3G59110,AT1G56720,AT1G09440 receptor-like protein kinase Os10g0497600 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J033116G17, full insert sequence),Os01g0601200 protein (Fragment),Os01g0323000 protein (Receptor protein kinase PERK1-like protein),Os01g0323000 protein (Fragment) Q337H2,Q0JLG9,Q9AWQ0,A0A0P0V1Q7 Q337H2_ORYSJ,Q0JLG9_ORYSJ,Q9AWQ0_ORYSJ,A0A0P0V1Q7_ORYSJ Os10g0497600 LOC_Os10g35450 Os10g0497600 OSNPB_100497600,Os01g0601200 Os01g0601200 OSNPB_010601200,Os01g0323000 Os01g0323000 OsJ_01535 OSNPB_010323000 P0426D06.43,Os01g0323000 OSNPB_010323000 ENOG411DSXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY NA NA NA NA NA NA NA ENOG411DSXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain OSJNBa0018J19.11 protein (Os04g0359100 protein),Os04g0357850 protein,Os04g0359700 protein,Os04g0358000 protein Q7XMU7,A0A0P0W9Q4,A0A0P0W924,A0A0P0W8W7 Q7XMU7_ORYSJ,A0A0P0W9Q4_ORYSJ,A0A0P0W924_ORYSJ,A0A0P0W8W7_ORYSJ Os04g0359100 OSJNBa0018J19.11 OSNPB_040359100,Os04g0357850 OSNPB_040357850,Os04g0359700 OSNPB_040359700,Os04g0358000 OSNPB_040358000 ENOG411DSXD EMB2788 F4JVU5,F4JVU6,F4IBR2 F4JVU5_ARATH,F4JVU6_ARATH,F4IBR2_ARATH Ribosome 60S biogenesis amino-terminal protein,Nucleolar pre-ribosomal-associated protein Embryo defective; Cotyledon-D. Meinke-2008 288992,266630,270203 Ribosome 60S biogenesis amino-terminal protein,Nucleolar pre-ribosomal-associated protein histone acetyltransferase complex [GO:0000123]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; DNA demethylation [GO:0080111]; regulation of chromatin silencing [GO:0031935] locus:2116337;,locus:2207051; AT4G27010,AT1G72270 Ribosome 60S biogenesis N-terminal Os04g0625300 protein (Fragment),Os04g0625350 protein (Fragment) Q0J9Y4,A0A0P0WF96 Q0J9Y4_ORYSJ,A0A0P0WF96_ORYSJ Os04g0625300 Os04g0625300 OSNPB_040625300,Os04g0625350 OSNPB_040625350 ENOG411DSXZ Q9C823,A0A1P8API8 Y1523_ARATH,A0A1P8API8_ARATH C-type lectin receptor-like tyrosine-protein kinase At1g52310 (EC 2.7.10.1),Protein kinase family protein / C-type lectin domain-containing protein 2.7.10.1 61821,53065 C-type lectin receptor-like tyrosine-protein kinase At1g52310 (EC 2.7.10.1),Protein kinase family protein / C-type lectin domain-containing protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein tyrosine kinase activity [GO:0004714],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein tyrosine kinase activity [GO:0004713] locus:2018189; AT1G52310 C-type lectin receptor-like tyrosine-protein kinase Os01g0104000 protein Q658C8,Q658C7 Q658C8_ORYSJ,Q658C7_ORYSJ P0436E04.12-1 Os01g0104000 OsJ_00032 OSNPB_010104000,P0436E04.12-2 Os01g0104000 OSNPB_010104000 ENOG411DSXY PCMP-H24 Q9SY02 PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 89037 Pentatricopeptide repeat-containing protein At4g02750 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2140235; AT4G02750 Pentatricopeptide repeat-containing protein Os09g0327200 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6K2P5 Q6K2P5_ORYSJ P0706E03.7 Os09g0327200 OSNPB_090327200 ENOG411DSXX AOX1C,AOX2,AOX1B,AOX1A O22048,O22049,O23913,Q39219 AOX1C_ARATH,AOX2_ARATH,AOX1B_ARATH,AOX1A_ARATH Ubiquinol oxidase 1c, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1c),Ubiquinol oxidase 2, mitochondrial (EC 1.10.3.11) (Alternative oxidase 2),Ubiquinol oxidase 1b, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1b),Ubiquinol oxidase 1a, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1a) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Decreased operating efficiency of photosystem II and an enhanced activity of cyclic electron transport around photosystem I. Altered photosynthetic carbon metabolism when grown under high CO(2) concentrations. {ECO:0000269|PubMed:19825614, ECO:0000269|PubMed:20304787, ECO:0000269|PubMed:21707657, ECO:0000269|PubMed:22848123}. Sensitive to antimycin A (inhibitor of the cytochrome pathway of respiration)-R. Scheibe-2009 FUNCTION: Catalyzes the cyanide-resistant oxidation of ubiquinol and the reduction of molecular oxygen to water, but does not translocate protons and consequently is not linked to oxidative phosphorylation. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the cyanide-resistant oxidation of ubiquinol and the reduction of molecular oxygen to water, but does not translocate protons and consequently is not linked to oxidative phosphorylation. Increases respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures. {ECO:0000269|PubMed:1438286, ECO:0000269|PubMed:16299170, ECO:0000269|PubMed:9554960}. MISCELLANEOUS: Cys-127 is involved in the sulfhydryl/disulfide regulation system, but is not required for subunit dimerization. Presence of a positive charge at this residue 127 confers activity while an uncharged substitution creates an inactive enzyme (PubMed:9804851, PubMed:12034477). {ECO:0000305|PubMed:12034477, ECO:0000305|PubMed:9804851}. MetaCyc:AT3G22370-MONOMER; 1.10.3.11 37817,40087,37432,39980 Ubiquinol oxidase 1c, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1c),Ubiquinol oxidase 2, mitochondrial (EC 1.10.3.11) (Alternative oxidase 2),Ubiquinol oxidase 1b, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1b),Ubiquinol oxidase 1a, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1a) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; alternative oxidase activity [GO:0009916]; metal ion binding [GO:0046872]; ubiquinol:oxygen oxidoreductase activity [GO:0102721],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; alternative oxidase activity [GO:0009916]; metal ion binding [GO:0046872]; ubiquinol:oxygen oxidoreductase activity [GO:0102721]; alternative respiration [GO:0010230],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; alternative oxidase activity [GO:0009916]; metal ion binding [GO:0046872]; ubiquinol:oxygen oxidoreductase activity [GO:0102721]; cellular respiration [GO:0045333]; mitochondria-nucleus signaling pathway [GO:0031930]; response to cold [GO:0009409] DEVELOPMENTAL STAGE: Expressed ubiquitously. Not detected during germination. {ECO:0000269|PubMed:11434463, ECO:0000269|PubMed:16859634}.,DEVELOPMENTAL STAGE: Expressed predominantly during early stages of germination with maximum level at 12 hours after imbibition and at the latter stages of silique maturation. Accumulates in dry seeds. {ECO:0000269|PubMed:11434463, ECO:0000269|PubMed:16859634}.,DEVELOPMENTAL STAGE: Expressed during early flower development. Not detected during germination. {ECO:0000269|PubMed:11434463, ECO:0000269|PubMed:16859634}.,DEVELOPMENTAL STAGE: Expressed throughout development. Low expression during 48 hours after imbibition and then increases. {ECO:0000269|PubMed:11434463, ECO:0000269|PubMed:16859634}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, cotyledons and flowers. High expression in stamens. {ECO:0000269|PubMed:16258072, ECO:0000269|PubMed:16859634, ECO:0000269|PubMed:9349280}.,TISSUE SPECIFICITY: Maximally expressed in dry seeds. Detected in roots, stems and leaves. {ECO:0000269|PubMed:11434463, ECO:0000269|PubMed:16859634}.,TISSUE SPECIFICITY: Expressed in flowers. Detected only in stamen. {ECO:0000269|PubMed:16859634, ECO:0000269|PubMed:9349280}.,TISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves and flowers. High expression in sepals. {ECO:0000269|PubMed:16258072, ECO:0000269|PubMed:16859634, ECO:0000269|PubMed:9349280}. locus:2089124;,locus:2173353;,locus:2087882;,locus:2087807; AT3G27620,AT5G64210,AT3G22360,AT3G22370 Ubiquinol oxidase Ubiquinol oxidase 1a, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1a) (OsAOX1A),Ubiquinol oxidase 1c, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1c) (OsAOX1C) O82807,Q8W855 AOX1A_ORYSJ,AOX1C_ORYSJ AOX1A AOX1 Os04g0600200 LOC_Os04g51150 OsJ_16032 OSJNBa0083N12.11,AOX1C Os02g0700400 LOC_Os02g47200 OJ1111_E07.10 P0459B01.39 FUNCTION: Catalyzes the cyanide-resistant oxidation of ubiquinol and the reduction of molecular oxygen to water, but does not translocate protons and consequently is not linked to oxidative phosphorylation. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures. {ECO:0000250|UniProtKB:Q39219}. ENOG411DSXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cbl-interacting protein kinase CBL-interacting protein kinase 21 (EC 2.7.11.1) (OsCIPK21),CBL-interacting protein kinase 1 (EC 2.7.11.1) (OsCIPK01),CBL-interacting protein kinase 17 (EC 2.7.11.1) (OsCIPK17),Non-specific serine/threonine protein kinase (EC 2.7.11.1),Os01g0292200 protein (Fragment) Q0D4B2,Q9LGV5,Q75L42,A0A0P0X9G8,A0A0P0V1N9,A0A0P0V1W5 CIPKL_ORYSJ,CIPK1_ORYSJ,CIPKH_ORYSJ,A0A0P0X9G8_ORYSJ,A0A0P0V1N9_ORYSJ,A0A0P0V1W5_ORYSJ CIPK21 Os07g0637000 LOC_Os07g44290 OJ1136_D11.123,CIPK1 Os01g0292200 LOC_Os01g18800 P0706B05.31,CIPK17 Os05g0136200 LOC_Os05g04550 OJ1127_B08.4 P0519E07.18,Os07g0637000 OSNPB_070637000,Os01g0292200 OSNPB_010292200 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DSXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411DSXQ KCS11 O48780 KCS11_ARATH 3-ketoacyl-CoA synthase 11 (KCS-11) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 11) (VLCFA condensing enzyme 11) FUNCTION: Active on both saturated and mono-unsaturated acyl chains C16 to C20. {ECO:0000269|PubMed:16765910}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT2G26640-MONOMER; 2.3.1.199 57815 3-ketoacyl-CoA synthase 11 (KCS-11) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 11) (VLCFA condensing enzyme 11) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Only expressed in guard cells. Expressed in siliques, flowers, leaves, stems, roots and seedlings (PubMed:18465198). {ECO:0000269|PubMed:18465198}. locus:2043849; AT2G26640 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q6F365 Q6F365_ORYSJ Os05g0574600 Os05g0574600 OJ1268_B08.9 OsJ_19636 OSNPB_050574600 ENOG411DSXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF506) Os05g0519300 protein (cDNA clone:002-168-E12, full insert sequence) Q65X09 Q65X09_ORYSJ Os05g0519300 Os05g0519300 OSNPB_050519300 P0599F04.9 ENOG411DSXV Q8VYL4,A0A1P8AZH1,F4IQ07 Q8VYL4_ARATH,A0A1P8AZH1_ARATH,F4IQ07_ARATH RING/U-box superfamily protein (Uncharacterized protein At2g37150),RING/U-box superfamily protein 61217,63050,67154 RING/U-box superfamily protein (Uncharacterized protein At2g37150),RING/U-box superfamily protein locus:2061800; AT2G37150 zinc finger C3HC4 type domain containing protein expressed Os05g0163400 protein (cDNA clone:J033030D14, full insert sequence) Q75IR3 Q75IR3_ORYSJ Os05g0163400 OSJNBb0099P06.10 OSNPB_050163400 ENOG411DSXU CSY3,CSY1,CSY2 Q9SJH7,Q9LXS7,Q9LXS6 CISY3_ARATH,CISY1_ARATH,CISY2_ARATH Citrate synthase 3, peroxisomal (EC 2.3.3.16),Citrate synthase 1, peroxisomal (EC 2.3.3.16),Citrate synthase 2, peroxisomal (EC 2.3.3.16) Dormant seeds. Lack peroxisomal citrate synthase. Cannot mobilize triacyglycerols due to a block in fatty acid beta-oxidation. FUNCTION: Peroxisomal citrate synthase required for the fatty acid respiration in seedlings, citrate being exported from peroxisomes into mitochondria during respiration of triacylglycerol (TAG). Indeed, complete respiration requires the transfer of carbon in the form of citrate from the peroxisome to the mitochondria. {ECO:0000269|PubMed:15923350}. MISCELLANEOUS: Citrate synthase is found in nearly all cells capable of oxidative metabolism. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2. ARA:AT2G42790-MONOMER;,ARA:AT3G58750-MONOMER; 2.3.3.16 56175,52895,56603 Citrate synthase 3, peroxisomal (EC 2.3.3.16),Citrate synthase 1, peroxisomal (EC 2.3.3.16),Citrate synthase 2, peroxisomal (EC 2.3.3.16) peroxisome [GO:0005777]; citrate (Si)-synthase activity [GO:0004108]; fatty acid beta-oxidation [GO:0006635]; tricarboxylic acid cycle [GO:0006099],peroxisome [GO:0005777]; transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [GO:0046912]; tricarboxylic acid cycle [GO:0006099],peroxisome [GO:0005777]; plasmodesma [GO:0009506]; citrate (Si)-synthase activity [GO:0004108]; fatty acid beta-oxidation [GO:0006635]; tricarboxylic acid cycle [GO:0006099] DEVELOPMENTAL STAGE: Expressed throughout seedling growth. {ECO:0000269|PubMed:15923350}.,DEVELOPMENTAL STAGE: Weakly or not expressed during seedling growth. {ECO:0000269|PubMed:15923350}. TISSUE SPECIFICITY: Widely expressed. Expressed throughout the shoot. Expressed in flower, silique, stem, cauline leaf, young leaf, mature leaf and senescent leaf. {ECO:0000269|PubMed:15923350}.,TISSUE SPECIFICITY: Expressed only in siliques. Not expressed in flower, stem, cauline leaf, young leaf, mature leaf and senescent leaf. {ECO:0000269|PubMed:15923350}. locus:2052379;,locus:2099089;,locus:2098989; AT2G42790,AT3G58740,AT3G58750 citrate synthase Citrate synthase (EC 2.3.3.16),Citrate synthase (Fragment) Q6EUF8,A0A0P0VGU3 Q6EUF8_ORYSJ,A0A0P0VGU3_ORYSJ Os02g0232400 OJ1705_E12.26 OSNPB_020232400,Os02g0232400 OSNPB_020232400 ENOG411DSXT NAC075 Q9M0F8,A0A1P8B8V6,A0A1P8B8X0 Q9M0F8_ARATH,A0A1P8B8V6_ARATH,A0A1P8B8X0_ARATH NAC domain containing protein 75 (Uncharacterized protein AT4g29230),NAC domain containing protein 75 FUNCTION: Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. MISCELLANEOUS: Overexpression of NAC075 induces the formation of ectopic xylem vessel-like elements. {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. 54873,54744,48487 NAC domain containing protein 75 (Uncharacterized protein AT4g29230),NAC domain containing protein 75 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2118264; AT4G29230 no apical meristem protein Os05g0194500 protein (cDNA, clone: J075175B09, full insert sequence),Os01g0191300 protein (Fragment) Q6L4N9,A0A0P0UZA9,A0A0P0UZ51 Q6L4N9_ORYSJ,A0A0P0UZA9_ORYSJ,A0A0P0UZ51_ORYSJ Os05g0194500 OsJ_17422 OSNPB_050194500 P0473H02.3,Os01g0191300 OSNPB_010191300 ENOG411DSAC VHA-D Q9XGM1 VATD_ARATH V-type proton ATPase subunit D (V-ATPase subunit D) (Vacuolar H(+)-ATPase subunit D) (Vacuolar proton pump subunit D) FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}. R-ATH-1222556;R-ATH-6798695;R-ATH-77387;R-ATH-917977; 29059 V-type proton ATPase subunit D (V-ATPase subunit D) (Vacuolar H(+)-ATPase subunit D) (Vacuolar proton pump subunit D) Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; proton transport [GO:0015992] locus:2099074; AT3G58730 V-type proton ATPase subunit OSJNBa0033G05.3 protein (OSJNBa0063C18.17 protein) (Os04g0643100 protein) (cDNA clone:002-120-A07, full insert sequence) (cDNA clone:J013110H12, full insert sequence) Q7XJX6 Q7XJX6_ORYSJ Os04g0643100 Os04g0643100 OSJNBa0033G05.3 OSJNBa0063C18.17 OSNPB_040643100 ENOG411DSJ1 Q9C938 Q9C938_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxidoreductase) (Putative oxidoreductase; 33116-34434) ARA:GQT-667-MONOMER; 35735 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxidoreductase) (Putative oxidoreductase; 33116-34434) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2011581; AT1G52800 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E0R3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411E0R2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain Os05g0481500 protein (cDNA clone:J023133B04, full insert sequence) Q0DH98 Q0DH98_ORYSJ Os05g0481500 Os05g0481500 OSNPB_050481500 ENOG411E0R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 OSJNBb0049I21.4 protein (Os04g0142600 protein),OSJNBa0056L23.26 protein (Os04g0139400 protein),OSJNBa0057M08.5 protein (Os04g0147200 protein) (cDNA, clone: J090063K16, full insert sequence),OSJNBa0056L23.23 protein (Os04g0139100 protein),Os04g0149100 protein,Os04g0151300 protein,Os04g0150300 protein (Fragment),Os04g0140066 protein,Os04g0144300 protein (Fragment),Os04g0149300 protein,Os04g0153800 protein,Os04g0152500 protein (Fragment),Os04g0144832 protein,Os04g0140800 protein,Os04g0143200 protein,Os04g0145400 protein,Os04g0139000 protein,Os04g0143100 protein Q7XRV7,Q7XL31,A3AQN1,Q7XL34,A0A0P0W6K5,A0A0P0W6Q8,A0A0P0W6H4,A0A0P0W6I9,A0A0P0W6U6,A0A0N7KIJ5,A0A0P0W6W5,A0A0P0W6R4,A0A0P0W6E7,A0A0P0W6N0,A0A0P0W7B7,A0A0P0W6S0,A0A0N7KIJ0,A0A0P0W6I5 Q7XRV7_ORYSJ,Q7XL31_ORYSJ,A3AQN1_ORYSJ,Q7XL34_ORYSJ,A0A0P0W6K5_ORYSJ,A0A0P0W6Q8_ORYSJ,A0A0P0W6H4_ORYSJ,A0A0P0W6I9_ORYSJ,A0A0P0W6U6_ORYSJ,A0A0N7KIJ5_ORYSJ,A0A0P0W6W5_ORYSJ,A0A0P0W6R4_ORYSJ,A0A0P0W6E7_ORYSJ,A0A0P0W6N0_ORYSJ,A0A0P0W7B7_ORYSJ,A0A0P0W6S0_ORYSJ,A0A0N7KIJ0_ORYSJ,A0A0P0W6I5_ORYSJ Os04g0142600 OsJ_13678 OSJNBb0049I21.4 OSNPB_040142600,Os04g0139400 OsJ_13669 OSJNBa0056L23.26 OSNPB_040139400,OSJNBa0057M08.5 Os04g0147200 OsJ_13688 OSNPB_040147200,Os04g0139100 OsJ_13668 OSJNBa0056L23.23 OSNPB_040139100,Os04g0149100 OSNPB_040149100,Os04g0151300 OSNPB_040151300,Os04g0150300 OSNPB_040150300,Os04g0140066 OSNPB_040140066,Os04g0144300 OSNPB_040144300,Os04g0149300 OSNPB_040149300,Os04g0153800 OSNPB_040153800,Os04g0152500 OSNPB_040152500,Os04g0144832 OSNPB_040144832,Os04g0140800 OSNPB_040140800,Os04g0143200 OSNPB_040143200,Os04g0145400 OSNPB_040145400,Os04g0139000 OSNPB_040139000,Os04g0143100 OSNPB_040143100 ENOG411E0RK LPXK,LpxK Q8LEA0,A0A1I9LRA0,A0A1I9LRA2,F4JEP7,A0A1I9LRA1 LPXK_ARATH,A0A1I9LRA0_ARATH,A0A1I9LRA2_ARATH,F4JEP7_ARATH,A0A1I9LRA1_ARATH Probable tetraacyldisaccharide 4'-kinase, mitochondrial (EC 2.7.1.130) (Protein LIPID X 4'-kinase) (AtLpxK),Tetraacyldisaccharide 4'-kinase family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants lacking LPXK accumulate high levels of disaccharide-1-phosphate (DS-1-P). {ECO:0000269|PubMed:21709257}. FUNCTION: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses (Potential). {ECO:0000305}. PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 6/6. {ECO:0000269|PubMed:21709257}. 2.7.1.130 44199,35447,31273,40736,32192 Probable tetraacyldisaccharide 4'-kinase, mitochondrial (EC 2.7.1.130) (Protein LIPID X 4'-kinase) (AtLpxK),Tetraacyldisaccharide 4'-kinase family protein mitochondrion [GO:0005739]; ATP binding [GO:0005524]; tetraacyldisaccharide 4'-kinase activity [GO:0009029]; lipid A biosynthetic process [GO:0009245]; lipid X metabolic process [GO:2001289],ATP binding [GO:0005524]; tetraacyldisaccharide 4'-kinase activity [GO:0009029]; lipid A biosynthetic process [GO:0009245],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; tetraacyldisaccharide 4'-kinase activity [GO:0009029]; lipid A biosynthetic process [GO:0009245] locus:2085765; AT3G20480 tetraacyldisaccharide Os07g0102000 protein (Fragment) A0A0P0X1P5 A0A0P0X1P5_ORYSJ Os07g0102000 OSNPB_070102000 ENOG411E0RY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand_like Phosphoinositide phospholipase C (EC 3.1.4.11) Q75IL8 Q75IL8_ORYSJ Os05g0127200 OsJ_16979 OSNPB_050127200 P0683F12.11 ENOG411E0RZ WAKL14 Q8RY67,Q8L8Y2,A0A1P8B4V9 WAKLO_ARATH,Q8L8Y2_ARATH,A0A1P8B4V9_ARATH Wall-associated receptor kinase-like 14 (EC 2.7.11.-),Uncharacterized protein At4g00955 (Wall-associated receptor kinase-like protein),Wall-associated receptor kinase-like protein FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. 2.7.11.- 77873,27124,30146 Wall-associated receptor kinase-like 14 (EC 2.7.11.-),Uncharacterized protein At4g00955 (Wall-associated receptor kinase-like protein),Wall-associated receptor kinase-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],plasma membrane [GO:0005886]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],kinase activity [GO:0016301] locus:2046728;,locus:505006422; AT2G23450,AT4G00955 wall-associated receptor kinase-like Os03g0225700 protein (WAK-like kinase, putative, expressed) (cDNA clone:J033059I12, full insert sequence) Q8H7R6 Q8H7R6_ORYSJ OSJNBa0081P02.15 LOC_Os03g12470 Os03g0225700 OSNPB_030225700 ENOG411E23M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os03g0578900 protein (Fragment) A0A0P0W0B3 A0A0P0W0B3_ORYSJ Os03g0578900 OSNPB_030578900 ENOG411E23N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heparanase-like protein Os07g0598400 protein (Putative beta-glucuronidase) Q6ZJE2 Q6ZJE2_ORYSJ Os07g0598400 Os07g0598400 OJ1579_C03.21 OSNPB_070598400 ENOG411E23H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0187300 protein (Fragment) A0A0P0WTV7 A0A0P0WTV7_ORYSJ Os06g0187300 OSNPB_060187300 ENOG411E23I PRA1B4 O80915 PR1B4_ARATH PRA1 family protein B4 (AtPRA1.B4) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 23671 PRA1 family protein B4 (AtPRA1.B4) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in roots, lateral roots, lateral root caps, stomata and trichomes. {ECO:0000269|PubMed:18583532}. locus:2057197; AT2G38360 prenylated Rab PRA1 family protein Q65WW5 Q65WW5_ORYSJ Os05g0474400 Os05g0474400 OSNPB_050474400 P0486C01.10 FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. ENOG411E23K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0535400 protein Q69JZ6 Q69JZ6_ORYSJ Os09g0535400 OSNPB_090535400 P0569E11.6 ENOG411E23F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os02g0788800 protein (Fragment) A0A0P0VQI5 A0A0P0VQI5_ORYSJ Os02g0788800 OSNPB_020788800 ENOG411E23C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os07g0407900 protein (cDNA clone:002-152-D03, full insert sequence) Q69Q72 Q69Q72_ORYSJ OJ1723_B06.129 Os07g0407900 OsJ_23923 OSNPB_070407900 ENOG411E23X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os04g0420600 protein A0A0P0WAN9 A0A0P0WAN9_ORYSJ Os04g0420600 OSNPB_040420600 ENOG411E23Y Q8LF09 FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160 52063 F-box/FBD/LRR-repeat protein At4g00160 locus:2126911; AT4G00160 FBD Os07g0287000 protein (Fragment) Q0D774 Q0D774_ORYSJ Os07g0287000 Os07g0287000 OSNPB_070287000 ENOG411E23Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity) Expansin-B13 (Beta-expansin-13) (OsEXPB13) (OsaEXPb1.4),Expansin-B1 (Beta-expansin-1) (Major pollen allergen Ory s 1) (Ory s I) (OsEXPB1) (OsaEXPb1.2) (OsaEXPb1.3) (allergen Ory s 1),Expansin-B10 (Beta-expansin-10) (OsEXPB10) (OsaEXPb1.5) Q946J4,Q40638,Q8H7T4 EXB13_ORYSJ,EXPB1_ORYSJ,EXB10_ORYSJ EXPB13 Os03g0106700 LOC_Os03g01630 OSJNBa0009C08.17,EXPB1a Os03g0106500 LOC_Os03g01610 OSJNBa0009C08.15; EXPB1b Os03g0106900 LOC_Os03g01650 OSJNBa0009C08.19,EXPB10 Os03g0106800 LOC_Os03g01640 OSJNBa0009C08.18 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E23T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Exostosin family protein (Os10g0458900 protein) (Putative exostosin family protein) Q94LT2 Q94LT2_ORYSJ OSJNBa0013H08.11 LOC_Os10g32080 Os10g0458900 OSJNBb0011A08.6 OSNPB_100458900 ENOG411E23U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein, expressed (Os11g0594400 protein) (cDNA clone:002-172-H02, full insert sequence),F-box domain containing protein, expressed (Os11g0593500 protein),F-box domain containing protein (Os11g0593400 protein),Os08g0164100 protein (cDNA clone:002-146-C07, full insert sequence) Q2R1S9,Q2R1T5,Q2R1T7,Q84S41 Q2R1S9_ORYSJ,Q2R1T5_ORYSJ,Q2R1T7_ORYSJ,Q84S41_ORYSJ LOC_Os11g38180 Os11g0594400 OsJ_34466 OSNPB_110594400,LOC_Os11g38120 Os11g0593500 OSNPB_110593500,Os11g0593400 LOC_Os11g38100 OSNPB_110593400,OJ9990_A01.125 Os08g0164100 OJ1449_C01.8 OSNPB_080164100 ENOG411E23V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF677) Os01g0264001 protein,Os04g0423200 protein A0A0P0V130,A0A0P0WAD5 A0A0P0V130_ORYSJ,A0A0P0WAD5_ORYSJ Os01g0264001 OSNPB_010264001,Os04g0423200 OSNPB_040423200 ENOG411E23W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Basic helix-loop-helix (BHLH)-like protein (Os09g0455300 protein) (cDNA clone:001-012-F09, full insert sequence) (cDNA clone:J023048E05, full insert sequence) Q67TR8 Q67TR8_ORYSJ Os09g0455300 Os09g0455300 B1342C04.6 OSNPB_090455300 P0025H07.25 ENOG411E23P RABA6B,RABA6A Q0WQN4,Q9C9U7 RAA6B_ARATH,RAA6A_ARATH Ras-related protein RABA6b (AtRABA6b),Ras-related protein RABA6a (AtRABA6a) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. 25617,26039 Ras-related protein RABA6b (AtRABA6b),Ras-related protein RABA6a (AtRABA6a) endosome [GO:0005768]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031] locus:2194095;,locus:2027874; AT1G18200,AT1G73640 ras-related protein NA NA NA NA NA NA NA ENOG411E23Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain containing protein, expressed (Os03g0191900 protein) Q10QM1 Q10QM1_ORYSJ Os03g0191900 LOC_Os03g09170 Os03g0191900 OSNPB_030191900 ENOG411E23R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene receptor Probable ethylene response sensor 2 (OsERS2) (EC 2.7.13.3) (Ethylene response factor 2),Os05g0155200 protein (Fragment) Q0DKM0,A0A0P0WIA6 ERS2_ORYSJ,A0A0P0WIA6_ORYSJ ERS2 Os05g0155200 LOC_Os05g06320 OsJ_17173 P0431G05.6,Os05g0155200 OSNPB_050155200 DISRUPTION PHENOTYPE: Chlorina phenotype (PubMed:16891544). Enhanced ethylene sensitivity (PubMed:19417056). {ECO:0000269|PubMed:16891544, ECO:0000269|PubMed:19417056}. FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as negative regulator of ethylene signaling. May play a role in the regulation of flowering by upregulating GI (GIGANTEA) and RCN1 and regulate starch accumulation by down-regulating the alpha-amylase AMY3D. {ECO:0000269|PubMed:19417056}. ENOG411E23S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os05g0508500 protein,Os12g0168600 protein B9FL17,A0A0P0Y7B5 B9FL17_ORYSJ,A0A0P0Y7B5_ORYSJ Os05g0508500 OsJ_19141 OSNPB_050508500,Os12g0168600 OSNPB_120168600 ENOG411E239 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E234 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0463700 protein (Putative AT hook-containing MAR-binding protein) (cDNA clone:001-030-H09, full insert sequence) Q69MD2 Q69MD2_ORYSJ Os09g0463700 Os09g0463700 OsJ_29665 OSJNBb0019B14.20 OSNPB_090463700 ENOG411E235 Q9LNR2,F4IDE6 Q9LNR2_ARATH,F4IDE6_ARATH Alpha/beta-Hydrolases superfamily protein (F1L3.12) (Uncharacterized protein At1g17430),Alpha/beta-Hydrolases superfamily protein 37852,38440 Alpha/beta-Hydrolases superfamily protein (F1L3.12) (Uncharacterized protein At1g17430),Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2018856;,locus:2030175; AT1G17430,AT1G72620 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E231 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 OSJNBb0045P24.5 protein (Os04g0221800 protein),Os02g0245400 protein Q7XWN5,A0A0P0VGZ5 Q7XWN5_ORYSJ,A0A0P0VGZ5_ORYSJ Os04g0221800 OsJ_13884 OSJNBb0045P24.5 OSNPB_040221800,Os02g0245400 OSNPB_020245400 ENOG411E232 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0537300 protein) (cDNA clone:J013169H09, full insert sequence) Q336W9 Q336W9_ORYSJ Os10g0537300 LOC_Os10g39200 Os10g0537300 OSNPB_100537300 ENOG411E233 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EJ3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytosine specific DNA methyltransferase replication foci domain NA NA NA NA NA NA NA ENOG411EJ3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Os11g0431700 protein (Serine carboxypeptidase family protein, expressed),Os11g0431400 protein (Fragment),Os11g0431100 protein,Os11g0430600 protein (Fragment),Os06g0520000 protein H2KW63,A0A0P0Y283,A0A0P0Y2J3,A0A0P0Y214,A0A0P0WX88 H2KW63_ORYSJ,A0A0P0Y283_ORYSJ,A0A0P0Y2J3_ORYSJ,A0A0P0Y214_ORYSJ,A0A0P0WX88_ORYSJ Os11g0431700 LOC_Os11g24389 OSNPB_110431700,Os11g0431400 OSNPB_110431400,Os11g0431100 OSNPB_110431100,Os11g0430600 OSNPB_110430600,Os06g0520000 OSNPB_060520000 ENOG411EJ3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EJ3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0116800 protein,Os01g0117000 protein,Os01g0117600 protein (Fragment),Os01g0117400 protein A0A0P0UXF8,A0A0P0UX91,A0A0P0UX99,A0A0P0UXJ8 A0A0P0UXF8_ORYSJ,A0A0P0UX91_ORYSJ,A0A0P0UX99_ORYSJ,A0A0P0UXJ8_ORYSJ Os01g0116800 OSNPB_010116800,Os01g0117000 OSNPB_010117000,Os01g0117600 OSNPB_010117600,Os01g0117400 OSNPB_010117400 ENOG411EJ3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: heat shock NA NA NA NA NA NA NA ENOG411EJ3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 OSJNBb0085F13.15 protein (Os04g0107700 protein) (cDNA clone:002-174-C02, full insert sequence) Q7XRA0 Q7XRA0_ORYSJ Os04g0107700 Os04g0107700 OSJNBb0085F13.15 OSNPB_040107700 ENOG411EJ3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: extra spindle pole bodies homolog 1 (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EJ3T NSFBx Q5EAF6,F4KI28 FB336_ARATH,F4KI28_ARATH Probable F-box protein At5g04010 (Non-specific F-box protein),F-box protein 32493,20085 Probable F-box protein At5g04010 (Non-specific F-box protein),F-box protein locus:2150600;,locus:2150590; AT5G04010,AT5G03920 NA NA NA NA NA NA NA NA ENOG411EJ3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HATPase_c NA NA NA NA NA NA NA ENOG411EJ3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF Os04g0307500 protein,Os04g0286300 protein A0A0P0W8E3,A0A0P0W7Y8 A0A0P0W8E3_ORYSJ,A0A0P0W7Y8_ORYSJ Os04g0307500 OSNPB_040307500,Os04g0286300 OSNPB_040286300 ENOG411EJ3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EJ3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ankyrin Repeat NA NA NA NA NA NA NA ENOG411EJ3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os05g0468100 protein (cDNA clone:J033037O09, full insert sequence) Q6I5S1 Q6I5S1_ORYSJ Os05g0468100 OJ1058_C01.4 OJ1387_F08.19 OSNPB_050468100 ENOG411EJ3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411EJ3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os07g0218700 protein (Putative cytochrome P450),Os07g0220200 protein Q8GVL3,A0A0P0X4A3 Q8GVL3_ORYSJ,A0A0P0X4A3_ORYSJ Os07g0218700 OSJNBa0031C24.124 OSNPB_070218700,Os07g0220200 OSNPB_070220200 ENOG411EJ3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved region of Rad21 / Rec8 like protein NA NA NA NA NA NA NA ENOG411EJ34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EJ35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EJ36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Spc97 / Spc98 family NA NA NA NA NA NA NA ENOG411EJ37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Potassium voltage-gated channel subfamily H (Eag-related) member NA NA NA NA NA NA NA ENOG411EJ30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EJ32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os03g0439900 protein (Fragment) Q0DQW8 Q0DQW8_ORYSJ Os03g0439900 OSNPB_030439900 ENOG411EJ33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium-activated BK potassium channel alpha subunit NA NA NA NA NA NA NA ENOG411EJ38 A0A1P8B290,F4ITP5 A0A1P8B290_ARATH,F4ITP5_ARATH TraB family protein 32040,39881 TraB family protein integral component of membrane [GO:0016021] locus:2062581; AT2G32340 TraB family NA NA NA NA NA NA NA ENOG411DSAP SPE1,SPE2 Q9SI64,O23141 SPE1_ARATH,SPE2_ARATH Arginine decarboxylase 1 (ADC 1) (ADC-O) (ARGDC 1) (EC 4.1.1.19),Arginine decarboxylase 2 (ADC 2) (ARGDC 2) (EC 4.1.1.19) (ADC-N) Increased lateral root number; Sensitive to salt-R. Malmberg-1998 FUNCTION: Required for the biosynthesis of putrescine. Catalyzes the first step of polyamine (PA) biosynthesis to produce putrescine from arginine (PubMed:11576438, PubMed:15733873, PubMed:25409942). Is a minor contributor to basal arginine decarboxylase (ADC) activity and putrescine biosynthesis (PubMed:25409942). Accumulation of putrescine plays a positive role in freezing tolerance (PubMed:18701673). Production of polyamines is essential for normal seed development (PubMed:15733873). Controls PA homeostasis which is crucial for normal plant growth and development (PubMed:27014322). {ECO:0000269|PubMed:11576438, ECO:0000269|PubMed:15733873, ECO:0000269|PubMed:18701673, ECO:0000269|PubMed:25409942, ECO:0000269|PubMed:27014322}.,FUNCTION: Required for the biosynthesis of putrescine. Catalyzes the first step of polyamine (PA) biosynthesis to produce putrescine from arginine (PubMed:14684170, PubMed:15733873, PubMed:16045477, PubMed:25409942). Is a major contributor to basal arginine decarboxylase (ADC) activity and putrescine biosynthesis (PubMed:25409942). Accumulation of putrescine plays a positive role in salt stress tolerance (PubMed:14684170). Accumulation of putrescine plays a positive role in freezing tolerance (PubMed:18701673). Production of PA is essential for normal seed development (PubMed:15733873). Controls PA homeostasis which is crucial for normal plant growth and development (PubMed:27014322). {ECO:0000269|PubMed:14684170, ECO:0000269|PubMed:15733873, ECO:0000269|PubMed:16045477, ECO:0000269|PubMed:18701673, ECO:0000269|PubMed:25409942, ECO:0000269|PubMed:27014322}. MISCELLANEOUS: Plants over-expressing ADC2 accumulate very high levels of putrescine and exhibit dwarfism and late-flowering phenotypes. {ECO:0000269|PubMed:16045477}. PATHWAY: Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1. ARA:AT2G16500-MONOMER;,ARA:AT4G34710-MONOMER; 4.1.1.19; 4.1.1.19 76175,77219 Arginine decarboxylase 1 (ADC 1) (ADC-O) (ARGDC 1) (EC 4.1.1.19),Arginine decarboxylase 2 (ADC 2) (ARGDC 2) (EC 4.1.1.19) (ADC-N) arginine decarboxylase activity [GO:0008792]; arginine catabolic process [GO:0006527]; polyamine biosynthetic process [GO:0006596]; putrescine biosynthetic process [GO:0009446]; response to cold [GO:0009409]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; spermidine biosynthetic process [GO:0008295],arginine decarboxylase activity [GO:0008792]; arginine catabolic process [GO:0006527]; polyamine biosynthetic process [GO:0006596]; putrescine biosynthetic process [GO:0009446]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to jasmonic acid [GO:0009753]; response to karrikin [GO:0080167]; response to osmotic stress [GO:0006970]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; spermidine biosynthetic process [GO:0008295] locus:2045111;,locus:2139629; AT2G16500,AT4G34710 arginine decarboxylase Arginine decarboxylase 1 (ARGDC1) (OsADC1) (EC 4.1.1.19),Os08g0433050 protein,Arginine decarboxylase (EC 4.1.1.19) Q9SNN0,A0A0N7KPW7,A0A0P0XFY7 SPE1_ORYSJ,A0A0N7KPW7_ORYSJ,A0A0P0XFY7_ORYSJ ADC1 Os06g0131300 LOC_Os06g04070 P0493C11.18,Os08g0433050 OSNPB_080433050,Os08g0433000 OSNPB_080433000 ENOG411EIZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: cleavage and polyadenylation Os04g0252200 protein,Os04g0252200 protein (Fragment) A0A0P0W8G0,A0A0P0W7T5 A0A0P0W8G0_ORYSJ,A0A0P0W7T5_ORYSJ Os04g0252200 OSNPB_040252200 ENOG411EIZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os08g0337800 protein,Os05g0586050 protein (Fragment) A0A0P0XEP7,A0A0P0WRE6 A0A0P0XEP7_ORYSJ,A0A0P0WRE6_ORYSJ Os08g0337800 OSNPB_080337800,Os05g0586050 OSNPB_050586050 ENOG411EIZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EIZE PERK5 Q8GX23 PERK5_ARATH Proline-rich receptor-like protein kinase PERK5 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 5) (AtPERK5) 2.7.11.1 70902 Proline-rich receptor-like protein kinase PERK5 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 5) (AtPERK5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777] TISSUE SPECIFICITY: Mostly expressed in flower buds. {ECO:0000269|PubMed:15653807}. locus:2139474; AT4G34440 STYKc NA NA NA NA NA NA NA ENOG411EIZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EIZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EIZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411EIZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium-activated BK potassium channel alpha subunit NA NA NA NA NA NA NA ENOG411E6MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain NA NA NA NA NA NA NA ENOG411E7NE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7NM SAUR36 O22150 SAU36_ARATH Auxin-responsive protein SAUR36 (Protein RESPONSE TO AUXINS AND GIBBERELLINS 1) (Protein SENESCENCE-ASSOCIATED GENE 201) (Protein SMALL AUXIN UP RNA 36) DISRUPTION PHENOTYPE: Increased leaf size and delayed senescence. {ECO:0000269|PubMed:23250625}. FUNCTION: Acts a positive regulator of leaf senescence and may mediate auxin-induced leaf senescence (PubMed:23250625). Plays a role in the regulation of seed germination by gibberellins and abscisic acid (ABA). Plays a role in the regulation of light-dependent hypocotyl elongation (PubMed:23503980). {ECO:0000269|PubMed:23250625, ECO:0000269|PubMed:23503980}. 19042 Auxin-responsive protein SAUR36 (Protein RESPONSE TO AUXINS AND GIBBERELLINS 1) (Protein SENESCENCE-ASSOCIATED GENE 201) (Protein SMALL AUXIN UP RNA 36) nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; positive regulation of leaf senescence [GO:1900057]; regulation of growth [GO:0040008]; regulation of seed germination [GO:0010029] TISSUE SPECIFICITY: Expressed in embryo, endosperm, growing hypocotyls and shoot apical meristems. {ECO:0000269|PubMed:23503980}. locus:2050832; AT2G45210 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E7NK Q9C647,Q9SY56 Q9C647_ARATH,Q9SY56_ARATH At1g58420 (Uncharacterized conserved protein UCP031279) (Uncharacterized protein F9K23.5),At1g10140 (F14N23.2) (Uncharacterized conserved protein UCP031279) (Uncharacterized protein At1g10140) 20003,18374 At1g58420 (Uncharacterized conserved protein UCP031279) (Uncharacterized protein F9K23.5),At1g10140 (F14N23.2) (Uncharacterized conserved protein UCP031279) (Uncharacterized protein At1g10140) plasma membrane [GO:0005886] locus:2037670;,locus:2012833; AT1G58420,AT1G10140 CONTAINS InterPro DOMAIN s Uncharacterised conserved protein UCP031279 (InterPro IPR016972) NA NA NA NA NA NA NA ENOG411EIAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase alpha/beta family nucleotide-binding domain NA NA NA NA NA NA NA ENOG411EIAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysR substrate binding domain NA NA NA NA NA NA NA ENOG411EIAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein Q8HCP1 Q8HCP1_ORYSJ orf153 ENOG411EIAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIAC Q9SY52 Q9SY52_ARATH Uncharacterized protein AT4g03740 (Uncharacterized protein T5L23.25) 40280 Uncharacterized protein AT4g03740 (Uncharacterized protein T5L23.25) locus:2140745; AT4G03740 at4g03740 (e NA NA NA NA NA NA NA ENOG411EIAB F4JZS1,F4JZS0 F4JZS1_ARATH,F4JZS0_ARATH Transmembrane protein 16669,33906 Transmembrane protein integral component of membrane [GO:0016021] locus:2179754; AT5G26270 NA NA NA NA NA NA NA NA ENOG411EIAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0225100 protein (Fragment) A0A0P0Y8A8 A0A0P0Y8A8_ORYSJ Os12g0225100 OSNPB_120225100 ENOG411EIAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0486900 protein (Fragment),Os12g0149750 protein (Fragment),Os11g0150801 protein (Fragment),Os01g0233850 protein,Os05g0237501 protein (Fragment) A0A0N7KR09,A0A0N7KTK9,A0A0P0XZ18,A0A0P0V063,A0A0P0WJP2 A0A0N7KR09_ORYSJ,A0A0N7KTK9_ORYSJ,A0A0P0XZ18_ORYSJ,A0A0P0V063_ORYSJ,A0A0P0WJP2_ORYSJ Os09g0486900 OSNPB_090486900,Os12g0149750 OSNPB_120149750,Os11g0150801 OSNPB_110150801,Os01g0233850 OSNPB_010233850,Os05g0237501 OSNPB_050237501 ENOG411EIAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: KH domain containing 3-like subcortical maternal complex member NA NA NA NA NA NA NA ENOG411EIAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II reaction centre X protein (PsbX) NA NA NA NA NA NA NA ENOG411EIAQ O64565 O64565_ARATH At2g19320 (Uncharacterized protein At2g19320) 8706 At2g19320 (Uncharacterized protein At2g19320) locus:2047705; AT2G19320 NA NA NA NA NA NA NA NA ENOG411EIAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clp protease NA NA NA NA NA NA NA ENOG411EIAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA function NA NA NA NA NA NA NA ENOG411EIAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Nadh dehydrogenase NA NA NA NA NA NA NA ENOG411EIAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIA4 F16J13.220,F16J13.210 Q9SZ80,Q9SZ79 Q9SZ80_ARATH,Q9SZ79_ARATH RING/U-box superfamily protein (Uncharacterized protein AT4g12150) (Uncharacterized protein F16J13.220),RING/U-box superfamily protein (Uncharacterized protein AT4g12140) (Uncharacterized protein F16J13.210) 40029,22519 RING/U-box superfamily protein (Uncharacterized protein AT4g12150) (Uncharacterized protein F16J13.220),RING/U-box superfamily protein (Uncharacterized protein AT4g12140) (Uncharacterized protein F16J13.210) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2118071;,locus:2118056; AT4G12150,AT4G12140 Zinc finger C3HC4 type (RING finger) Os01g0535300 protein A0A0P0V3L8 A0A0P0V3L8_ORYSJ Os01g0535300 OSNPB_010535300 ENOG411EIA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0584450 protein A0A0P0WQV6 A0A0P0WQV6_ORYSJ Os05g0584450 OSNPB_050584450 ENOG411EIA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0116600 protein Q0DVR3 Q0DVR3_ORYSJ Os03g0116600 Os03g0116600 OsJ_09175 OSNPB_030116600 ENOG411EIA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SEC-C motif NA NA NA NA NA NA NA ENOG411EIA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein Sb08g007511 source NA NA NA NA NA NA NA ENOG411EIA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DS60 MQD19.19 Q9LIL3,Q9FG81 Q9LIL3_ARATH,Q9FG81_ARATH Aluminum induced protein with YGL and LRDR motifs (Uncharacterized protein At3g22850),Aluminum induced protein with YGL and LRDR motifs (Aluminum-induced protein-like) (Putative aluminum-induced protein) 27107,27509 Aluminum induced protein with YGL and LRDR motifs (Uncharacterized protein At3g22850),Aluminum induced protein with YGL and LRDR motifs (Aluminum-induced protein-like) (Putative aluminum-induced protein) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; response to abscisic acid [GO:0009737],cytosol [GO:0005829]; nucleus [GO:0005634] locus:2084598;,locus:2170822; AT3G22850,AT5G43830 Stem-specific protein Os03g0744600 protein (Stem-specific protein TSJT1, putative, expressed) (cDNA clone:J013037C05, full insert sequence),Expressed protein (Os03g0796000 protein) (Stem-specific protein TSJT1, putative, expressed) (cDNA clone:J013000M11, full insert sequence) Q7XXR0,Q6F391 Q7XXR0_ORYSJ,Q6F391_ORYSJ Os03g0744600 LOC_Os03g53270 Os03g0744600 OSNPB_030744600,OSJNBb0021G19.8 LOC_Os03g58170 Os03g0796000 OsJ_12946 OSNPB_030796000 ENOG411DS63 Q9SV09,A0A1I9LQK5,F4IWD6,Q9C8K5,F4I9K0,F4I9J8 C3H46_ARATH,A0A1I9LQK5_ARATH,F4IWD6_ARATH,Q9C8K5_ARATH,F4I9K0_ARATH,F4I9J8_ARATH Zinc finger CCCH domain-containing protein 46 (AtC3H46) (EC 3.1.-.-),RNA-binding (RRM/RBD/RNP motifs) family protein,RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein F5D21.14) FUNCTION: Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. 3.1.-.- 59789,66235,66093,43290,44660,57798 Zinc finger CCCH domain-containing protein 46 (AtC3H46) (EC 3.1.-.-),RNA-binding (RRM/RBD/RNP motifs) family protein,RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein F5D21.14) DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; nuclease activity [GO:0004518],RNA binding [GO:0003723],nucleic acid binding [GO:0003676] locus:2083740;,locus:2092970;,locus:2033949;,locus:2033882; AT3G51950,AT3G21100,AT1G51530,AT1G51520 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 53 (OsC3H53),Zinc finger CCCH domain-containing protein 22 (OsC3H22),Zinc finger CCCH domain-containing protein 23 (OsC3H23),Os03g0329200 protein (Fragment) Q0D3J9,Q10M00,Q10LZ9,A0A0N7KH73 C3H53_ORYSJ,C3H22_ORYSJ,C3H23_ORYSJ,A0A0N7KH73_ORYSJ Os07g0682400 LOC_Os07g48410 OSJNBa0008J01.35,Os03g0328900 LOC_Os03g21140,Os03g0329200 LOC_Os03g21160,Os03g0329200 OSNPB_030329200 ENOG411DS64 RBL19 Q8LF05 RBL19_ARATH Rhomboid-like protein 19 (AtRBL19) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:16895613}. R-ATH-6807878; 34084 Rhomboid-like protein 19 (AtRBL19) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2077377; AT3G07950 transmembrane protein 115-like Os07g0655400 protein (Putative placental protein 6),Os04g0173300 protein (Fragment),Os03g0358200 protein Q7EYZ3,Q0JF22,A0A0P0VXK3 Q7EYZ3_ORYSJ,Q0JF22_ORYSJ,A0A0P0VXK3_ORYSJ P0018C07.117 Os07g0655400 OsJ_25407 OSNPB_070655400,Os04g0173300 Os04g0173300 OSNPB_040173300,Os03g0358200 OSNPB_030358200 ENOG411DS66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BSD BSD domain containing protein, expressed (Os03g0729900 protein) (Putative BSD domain containing protein) (cDNA, clone: J090058A01, full insert sequence) Q851F1 Q851F1_ORYSJ Os03g0729900 LOC_Os03g52000 OsJ_12445 OSJNBb0011H13.11 OSNPB_030729900 ENOG411DS6Z IDD5 Q9ZUL3 IDD5_ARATH Protein indeterminate-domain 5, chloroplastic (ID1-like zinc finger protein 2) DISRUPTION PHENOTYPE: Down-regulation of SS4 during the light period of both short and long day conditions. Deformity of the chloroplasts and their contained starch granules, with an increased number of starch granules per chloroplast. {ECO:0000269|PubMed:22898356}. FUNCTION: Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation. {ECO:0000269|PubMed:22898356}. 64464 Protein indeterminate-domain 5, chloroplastic (ID1-like zinc finger protein 2) chloroplast [GO:0009507]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. locus:2051698; AT2G02070 zinc finger protein Os08g0554400 protein (Putative zinc finger protein) (cDNA clone:J013105K20, full insert sequence) (cDNA clone:J013124C13, full insert sequence),Os04g0566400 protein (cDNA clone:J013132I07, full insert sequence),Os09g0555700 protein (cDNA clone:J033029F02, full insert sequence),Finger protein pcp1-like (Os02g0672100 protein),Os04g0566400 protein,Os09g0555700 protein Q6Z3F1,B7EEB7,B7ERE7,Q6EU15,A0A0P0WDK4,A0A0P0XQC6 Q6Z3F1_ORYSJ,B7EEB7_ORYSJ,B7ERE7_ORYSJ,Q6EU15_ORYSJ,A0A0P0WDK4_ORYSJ,A0A0P0XQC6_ORYSJ Os08g0554400 Os08g0554400 OJ1125_C01.21 OSJNBb0011H15.47 OSNPB_080554400,Os04g0566400 OSNPB_040566400,Os09g0555700 Os09g0555700 OSNPB_090555700,Os02g0672100 OJ1493_H11.12 OsJ_07891 OSNPB_020672100,Os09g0555700 OSNPB_090555700 ENOG411DS6S KIN5B Q0WQJ7 KN5B_ARATH Kinesin-like protein KIN-5B (AtKRP125a) FUNCTION: Responsible for microtubule translocation. May be important for the organization of phragmoplast-specific arrays of microtubules (By similarity). Plays an essential role in stabilizing the mitotic spindle. Required during mitotic cytokinesis (By similarity). {ECO:0000250|UniProtKB:F4IIS5, ECO:0000250|UniProtKB:O23826}. ARA:GQT-392-MONOMER; R-ATH-6811434;R-ATH-983189; 117581 Kinesin-like protein KIN-5B (AtKRP125a) cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; spindle [GO:0005819]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; microtubule-based movement [GO:0007018] locus:2049791; AT2G37420 125 kDa kinesin-related Kinesin-like protein KIN-5B,Os03g0279816 protein B9F7C8,A0A0P0VWS0 KN5B_ORYSJ,A0A0P0VWS0_ORYSJ KIN5B Os03g0279832 LOC_Os03g17164 OsJ_10359,Os03g0279816 OSNPB_030279816 FUNCTION: Responsible for microtubule translocation. May be important for the organization of phragmoplast-specific arrays of microtubules (By similarity). Plays an essential role in stabilizing the mitotic spindle. Required during mitotic cytokinesis (By similarity). {ECO:0000250|UniProtKB:F4IIS5, ECO:0000250|UniProtKB:O23826}. ENOG411DS6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione Os05g0412800 protein (Putative glutathione s-transferase) Q6AUB4 Q6AUB4_ORYSJ Os05g0412800 OSNPB_050412800 P0017D10.7 ENOG411DS6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-type lectin S-receptor-like serine threonine-protein kinase RLK1-like NA NA NA NA NA NA NA ENOG411DS6V MJH22.1 Q6NPD1,A0A1P8BCR4 Q6NPD1_ARATH,A0A1P8BCR4_ARATH At5g62960 (UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein),UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein 40140,35605 At5g62960 (UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein),UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein integral component of membrane [GO:0016021] locus:2166290; AT5G62960 NA Os01g0171800 protein (cDNA clone:J013121I24, full insert sequence) Q0JQB6 Q0JQB6_ORYSJ Os01g0171800 Os01g0171800 OSNPB_010171800 ENOG411DY31 Q9ZUI7,A0A1P8AW95 Q9ZUI7_ARATH,A0A1P8AW95_ARATH Serine/threonine-protein kinase WNK (With No Lysine)-like protein (T2K10.11 protein) (Uncharacterized protein At1g60060),Serine/threonine-protein kinase WNK (With No Lysine)-like protein 43519,38660 Serine/threonine-protein kinase WNK (With No Lysine)-like protein (T2K10.11 protein) (Uncharacterized protein At1g60060),Serine/threonine-protein kinase WNK (With No Lysine)-like protein cytosol [GO:0005829]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],kinase activity [GO:0016301] locus:2202735; AT1G60060 expressed protein Os02g0742700 protein,Os06g0233800 protein Q6Z2W1,Q0DDC5 Q6Z2W1_ORYSJ,Q0DDC5_ORYSJ Os02g0742700 OJ1734_E02.2 OsJ_08346 OSNPB_020742700 P0585G03.25,Os06g0233800 Os06g0233800 OSNPB_060233800 ENOG411DY32 MAF19.5 Q9FNR0,Q9SD83 Q9FNR0_ARATH,Q9SD83_ARATH Emb|CAB62613.1,Uncharacterized protein F13G24.210 66266,63977 Emb|CAB62613.1,Uncharacterized protein F13G24.210 locus:2159416;,locus:2142793; AT5G61040,AT5G08010 NA Expressed protein (Os12g0576300 protein),Os12g0576300 protein (Fragment) Q2QN76,A0A0P0YBQ4 Q2QN76_ORYSJ,A0A0P0YBQ4_ORYSJ Os12g0576300 LOC_Os12g38730 OSNPB_120576300,Os12g0576300 OSNPB_120576300 ENOG411DS6A FKBP17-2 Q9LDY5 FK172_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic (PPIase FKBP17-2) (EC 5.2.1.8) (FK506-binding protein 17-2) (AtFKBP17-2) (Immunophilin FKBP17-2) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 26529 Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic (PPIase FKBP17-2) (EC 5.2.1.8) (FK506-binding protein 17-2) (AtFKBP17-2) (Immunophilin FKBP17-2) (Rotamase) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077] locus:2194065; AT1G18170 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q53RK7 Q53RK7_ORYSJ Os03g0708500 LOC_Os03g50080 Os03g0708500 OSNPB_030708500 ENOG411DY34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carbonic anhydrase Eukaryotic-type carbonic anhydrase (Eukaryotic-type carbonic anhydrase family protein, expressed) (Os11g0153200 protein) (cDNA clone:002-121-E01, full insert sequence),Eukaryotic-type carbonic anhydrase family protein, expressed (Os12g0153500 protein) (cDNA clone:J023047P18, full insert sequence) Q53LU8,Q2QXK5 Q53LU8_ORYSJ,Q2QXK5_ORYSJ Os11g0153200 LOC_Os11g05520 Os11g0153200 OsJ_32997 OSNPB_110153200,Os12g0153500 LOC_Os12g05730 Os12g0153500 OsJ_35255 OSNPB_120153500 ENOG411DS6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase NA NA NA NA NA NA NA ENOG411DS6G DIT2-1 Q9FMF7 DIT21_ARATH Dicarboxylate transporter 2.1, chloroplastic (AtpDCT1) (Glutamate/malate translocator) DISRUPTION PHENOTYPE: Non-viable seedlings under normal atmospheric conditions, but grow normally under non-photorespiratory conditions high CO(2) conditions. {ECO:0000269|PubMed:12154133}. FUNCTION: Glutamate/malate translocator involved with DIT1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Exports the end product of ammonia assimilation, glutamate, from plastids to the cytosol. The precursor for ammonia assimilation, 2-oxoglutarate, is imported from the cytosol by DIT1. {ECO:0000269|PubMed:12154133, ECO:0000269|PubMed:12887583}. 59992 Dicarboxylate transporter 2.1, chloroplastic (AtpDCT1) (Glutamate/malate translocator) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; L-glutamate transmembrane transporter activity [GO:0005313]; malate transmembrane transporter activity [GO:0015140]; oxaloacetate transmembrane transporter activity [GO:0015131]; ammonia assimilation cycle [GO:0019676]; L-glutamate transport [GO:0015813]; malate transmembrane transport [GO:0071423]; oxaloacetate transport [GO:0015729]; response to nematode [GO:0009624]; sodium ion transport [GO:0006814] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:12154133, ECO:0000269|PubMed:12887583}. locus:2173358; AT5G64290 2-oxoglutarate malate translocator Os09g0470000 protein (Fragment),Os08g0481800 protein (Fragment) Q0J116,Q0J4Y5 Q0J116_ORYSJ,Q0J4Y5_ORYSJ Os09g0470000 OSNPB_090470000,Os08g0481800 Os08g0481800 OSNPB_080481800 ENOG411EIYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0715300 protein,Os01g0715100 protein Q5JLT7,A0A0P0V7E5 Q5JLT7_ORYSJ,A0A0P0V7E5_ORYSJ B1131B07.16 Os01g0715300 OSNPB_010715300,Os01g0715100 OSNPB_010715100 ENOG411DY3P Q29QC1,Q9CA92,A0A1P8APW6,A0A1P8APW8,A0A1P8APX9 Q29QC1_ARATH,Q9CA92_ARATH,A0A1P8APW6_ARATH,A0A1P8APW8_ARATH,A0A1P8APX9_ARATH At1g09995 (DNA repair DEAD helicase RAD3/XP-D subfamily protein),Putative helicase; 55525-51977 (RAD3-like DNA-binding helicase protein),RAD3-like DNA-binding helicase protein 10299,99027,95515,81640,70831 At1g09995 (DNA repair DEAD helicase RAD3/XP-D subfamily protein),Putative helicase; 55525-51977 (RAD3-like DNA-binding helicase protein),RAD3-like DNA-binding helicase protein helicase activity [GO:0004386],nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleobase-containing compound metabolic process [GO:0006139] locus:504956155;,locus:2017894; AT1G09995,AT1G79890 ATP-dependent RNA helicase Os05g0219800 protein (Fragment) A0A0P0WJI0 A0A0P0WJI0_ORYSJ Os05g0219800 OSNPB_050219800 ENOG411DY3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development pest resistance and senescence or responses to wounding (By similarity) NA NA NA NA NA NA NA ENOG411DY3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0298500 protein (Zinc finger (C3HC4-type RING finger)-like protein) (cDNA clone:002-107-C03, full insert sequence) Q69VQ6 Q69VQ6_ORYSJ OJ1381_H04.25-1 Os09g0298500 OSNPB_090298500 ENOG411DY3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0203600 protein (Fragment) A0A0P0XSI7 A0A0P0XSI7_ORYSJ Os10g0203600 OSNPB_100203600 ENOG411DY3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA myb-related protein Hv33 Os01g0702700 protein (cDNA clone:J023084H22, full insert sequence) Q0JK18 Q0JK18_ORYSJ Os01g0702700 Os01g0702700 OsJ_03162 OSNPB_010702700 ENOG411DY3C PPD4 O49292 PPD4_ARATH PsbP domain-containing protein 4, chloroplastic (OEC23-like protein 5) MetaCyc:AT1G77090-MONOMER; 28501 PsbP domain-containing protein 4, chloroplastic (OEC23-like protein 5) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2025292; AT1G77090 Thylakoid lumenal 29.8 kDa protein Os12g0190200 protein (Thylakoid lumenal 29.8 kDa protein, putative, expressed),Os12g0190200 protein (Thylakoid lumenal 29.8 kDa protein, putative, expressed) (cDNA clone:006-309-D07, full insert sequence) Q2QWM7,Q2QWM6 Q2QWM7_ORYSJ,Q2QWM6_ORYSJ Os12g0190200 LOC_Os12g08830 OSNPB_120190200,LOC_Os12g08830 Os12g0190200 OSNPB_120190200 ENOG411DT6J Q9LHN7 PHSC_ARATH Probable polyamine transporter At3g13620 FUNCTION: Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. {ECO:0000250}. 52735 Probable polyamine transporter At3g13620 integral component of plasma membrane [GO:0005887]; amino acid transmembrane transporter activity [GO:0015171]; antiporter activity [GO:0015297]; polyamine transmembrane transporter activity [GO:0015203]; symporter activity [GO:0015293]; polyamine transport [GO:0015846] locus:2086794; AT3G13620 amino acid permease family protein Os03g0375900 protein,Os03g0375966 protein Q0DRK6,A0A0P0VYU0 Q0DRK6_ORYSJ,A0A0P0VYU0_ORYSJ Os03g0375900 OSNPB_030375900,Os03g0375966 OSNPB_030375966 ENOG411DT6K PCMP-E23 O64705 PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400 70532 Pentatricopeptide repeat-containing protein At2g34400 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2040924; AT2G34400 Pentatricopeptide repeat-containing protein Os05g0313600 protein,Os05g0307200 protein B9FKF7,A0A0P0WKG3 B9FKF7_ORYSJ,A0A0P0WKG3_ORYSJ Os05g0313600 Os05g0313600 OsJ_18018 OSNPB_050313600,Os05g0307200 OSNPB_050307200 ENOG411DT6H HISN5B,HISN5A O23346,P34047,A8MQQ8,F4JIH9 HIS5B_ARATH,HIS5A_ARATH,A8MQQ8_ARATH,F4JIH9_ARATH Imidazoleglycerol-phosphate dehydratase 2, chloroplastic (IGPD 2) (EC 4.2.1.19) (Protein HISTIDINE BIOSYNTHESIS 5B),Imidazoleglycerol-phosphate dehydratase 1, chloroplastic (IGPD 1) (EC 4.2.1.19) (Protein HISTIDINE BIOSYNTHESIS 5A),Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9.,PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9. {ECO:0000256|RuleBase:RU000598}. MetaCyc:AT3G22425-MONOMER; Biosynthesis of secondary metabolites (01110),Histidine metabolism (00340),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 4.2.1.19 29424,29225,34100,30761 Imidazoleglycerol-phosphate dehydratase 2, chloroplastic (IGPD 2) (EC 4.2.1.19) (Protein HISTIDINE BIOSYNTHESIS 5B),Imidazoleglycerol-phosphate dehydratase 1, chloroplastic (IGPD 1) (EC 4.2.1.19) (Protein HISTIDINE BIOSYNTHESIS 5A),Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) chloroplast [GO:0009507]; imidazoleglycerol-phosphate dehydratase activity [GO:0004424]; metal ion binding [GO:0046872]; histidine biosynthetic process [GO:0000105],imidazoleglycerol-phosphate dehydratase activity [GO:0004424]; histidine biosynthetic process [GO:0000105] locus:1005716545;,locus:2129500; AT4G14910,AT3G22425 Imidazoleglycerolphosphate dehydratase Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) Q7XTN6 Q7XTN6_ORYSJ Os04g0617800 OsJ_16176 OSJNBa0058K23.1 OSJNBa0093O08.11 OSNPB_040617800 ENOG411DT6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding motif protein OSJNBa0038O10.22 protein (Os04g0527800 protein) (cDNA clone:J023020O03, full insert sequence) Q7XKI6 Q7XKI6_ORYSJ Os04g0527800 OSJNBa0038O10.22 OSNPB_040527800 ENOG411DT6N RUB1,RUB3,RUB2 Q9SHE7,O65381,Q8RUC6 RUB1_ARATH,RUB3_ARATH,RUB2_ARATH Ubiquitin-NEDD8-like protein RUB1 [Cleaved into: Ubiquitin; NEDD8-like protein RUB1 (Ubiquitin-related protein 1) (AtRUB1)],NEDD8-like protein RUB3 (Ubiquitin-related protein 3) (AtRUB3),Ubiquitin-NEDD8-like protein RUB2 [Cleaved into: Ubiquitin; NEDD8-like protein RUB2 (Ubiquitin-related protein 2) (AtRUB2)] FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: NEDD8-like protein RUB1: Appears to function as a stable post-translational protein modifier. An AMP-RUB1 intermediate is formed by an activating enzyme, distinct from the ubiquitin activating enzyme E1, which is composed of a heterodimer AXR1/ECR1. Auxin response is mediated, at least in part, through modification of the cullin AtCUL1 by the attachment of RUB1 to 'Lys-692'. {ECO:0000269|PubMed:10611386, ECO:0000269|PubMed:9624055}.,FUNCTION: May function as a stable post-translational protein modifier. {ECO:0000250}.,FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: NEDD8-like protein RUB2: Appears to function as a stable post-translational protein modifier. MISCELLANEOUS: Ubiquitin is encoded by 16 different genes. Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to a ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. R-ATH-5689603;R-ATH-8951664; 17397,8940,17150 Ubiquitin-NEDD8-like protein RUB1 [Cleaved into: Ubiquitin; NEDD8-like protein RUB1 (Ubiquitin-related protein 1) (AtRUB1)],NEDD8-like protein RUB3 (Ubiquitin-related protein 3) (AtRUB3),Ubiquitin-NEDD8-like protein RUB2 [Cleaved into: Ubiquitin; NEDD8-like protein RUB2 (Ubiquitin-related protein 2) (AtRUB2)] cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ethylene biosynthetic process [GO:0009693]; protein neddylation [GO:0045116]; response to auxin [GO:0009733],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:9857029}.,TISSUE SPECIFICITY: Detected in stems and flower buds, but not in leaves, mature flowers and seedlings. {ECO:0000269|PubMed:9857029}. locus:2197525;,locus:2008950;,locus:505006295; AT1G31340,AT1G11980,AT2G35635 ubiquitin-NEDD8-like protein Ubiquitin-like protein-NEDD8-like protein RUB3 [Cleaved into: Ubiquitin-like protein; NEDD8-like protein RUB3 (OsRUB3) (Ubiquitin-related protein 3)],Ubiquitin-NEDD8-like protein RUB1 [Cleaved into: Ubiquitin; NEDD8-like protein RUB1 (OsRUB1) (Ubiquitin-related protein 1)],Ubiquitin-NEDD8-like protein RUB2 [Cleaved into: Ubiquitin; NEDD8-like protein RUB2 (OsRUB2) (Ubiquitin-related protein 2)],Nedd8-like protein RUB3, putative, expressed (Os10g0541900 protein) P0C032,P0C030,P0C031,Q7XCL5 RUB3_ORYSJ,RUB1_ORYSJ,RUB2_ORYSJ,Q7XCL5_ORYSJ RUB3 NEDD8 UBL1 Os01g0641600 LOC_Os01g45400 P0039G05.16 P0510C12.1,RUB1 NEDD8 UBQ4 Os09g0420800 LOC_Os09g25320 OJ1740_D06.1 P0668D04.32,RUB2 NEDD8 UBQ5 Os06g0650100 LOC_Os06g44080 P0453H04.18,Os10g0541900 LOC_Os10g39590 OsJ_32324 OSNPB_100541900 FUNCTION: Ubiquitin-like protein: Involved in the ATP-dependent selective degradation of cellular proteins, the maintenance of chromatin structure, the regulation of gene expression, the stress response, and ribosome biogenesis. {ECO:0000250}.; FUNCTION: NEDD8-like protein RUB3: Appears to function as a stable post-translational protein modifier.,FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: NEDD8-like protein RUB1: Appears to function as a stable post-translational protein modifier.,FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: NEDD8-like protein RUB2: Appears to function as a stable post-translational protein modifier. MISCELLANEOUS: Synthesized as a precursor protein containing a N-terminal ubiquitin-like protein fused to the ubiquitin-related protein.,MISCELLANEOUS: Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to an ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. ENOG411DT6M Cand1 Q9FVT5 Q9FVT5_ARATH Plasminogen activator inhibitor (Uncharacterized protein At1g57680) (Uncharacterized protein T8L23.15) 40879 Plasminogen activator inhibitor (Uncharacterized protein At1g57680) (Uncharacterized protein T8L23.15) integral component of membrane [GO:0016021] locus:2206505; AT1G57680 expressed protein Os01g0885200 protein (cDNA clone:J023073G17, full insert sequence),Os01g0885200 protein (Fragment) Q8S0R7,A0A0P0VB99 Q8S0R7_ORYSJ,A0A0P0VB99_ORYSJ Os01g0885200 OsJ_04325 OSNPB_010885200 P0408G07.8,Os01g0885200 OSNPB_010885200 ENOG411DT6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) Os06g0181800 protein A0A0P0WT63 A0A0P0WT63_ORYSJ Os06g0181800 OSNPB_060181800 ENOG411DT6C O64785 O64785_ARATH ARM repeat superfamily protein (At1g61350/T1F9_16) (T1F9.16) 63021 ARM repeat superfamily protein (At1g61350/T1F9_16) (T1F9.16) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2197654; AT1G61350 armadillo beta-catenin repeat family protein Arm repeat containing protein-like (Os07g0560300 protein) (cDNA clone:J033031P12, full insert sequence),Armadillo/beta-catenin repeat protein-like (Os06g0683950 protein),Os02g0160250 protein Q6Z3Z9,Q655G2,A0A0P0VFC3 Q6Z3Z9_ORYSJ,Q655G2_ORYSJ,A0A0P0VFC3_ORYSJ Os07g0560300 Os07g0560300 OSNPB_070560300 P0567H04.29,Os06g0683950 OsJ_22404 OSNPB_060683950 P0009H10.16,Os02g0160250 OSNPB_020160250 ENOG411DT6A RH30,RH20,MDC12.8 Q8W4R3,Q9C718,A0A1P8BFB3,A0A1P8ATW1 RH30_ARATH,RH20_ARATH,A0A1P8BFB3_ARATH,A0A1P8ATW1_ARATH DEAD-box ATP-dependent RNA helicase 30 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13),P-loop containing nucleoside triphosphate hydrolases superfamily protein,DEA(D/H)-box RNA helicase family protein FUNCTION: ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. {ECO:0000250}. ARA:AT1G35250-MONOMER; R-ATH-72163; 3.6.4.13 64621,55576,52937,58522 DEAD-box ATP-dependent RNA helicase 30 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13),P-loop containing nucleoside triphosphate hydrolases superfamily protein,DEA(D/H)-box RNA helicase family protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364],cytosol [GO:0005829]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2162022;,locus:2035741; AT5G63120,AT1G55150 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 30 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13),Os01g0911100 protein (Fragment),Os01g0911100 protein Q5N7W4,Q5QMN3,A0A0P0VBW9,A0A0P0VC15 RH30_ORYSJ,RH20_ORYSJ,A0A0P0VBW9_ORYSJ,A0A0P0VC15_ORYSJ Os01g0911100 LOC_Os01g68320 P0456E05.41-1 P0456E05.41-2 P0470A12.9-1 P0470A12.9-2,Os01g0197200 LOC_Os01g10050 P0419B01.12,Os01g0911100 OSNPB_010911100 FUNCTION: ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. {ECO:0000250}. ENOG411DT6F CHR8 Q9ZV43,A0A1P8AZA4 CHR8_ARATH,A0A1P8AZA4_ARATH Protein CHROMATIN REMODELING 8 (AtCHR8) (AtCSB) (EC 3.6.4.-),Chromatin remodeling 8 FUNCTION: Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. Upon DNA-binding, it locally modifies DNA conformation by wrapping the DNA around itself, thereby modifying the interface between stalled RNA polymerase II and DNA. It is required for transcription-coupled repair complex formation. {ECO:0000250|UniProtKB:Q03468}. R-ATH-6781823;R-ATH-6782135;R-ATH-6782210; 3.6.4.- 133593,140223 Protein CHROMATIN REMODELING 8 (AtCHR8) (AtCSB) (EC 3.6.4.-),Chromatin remodeling 8 nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; regulation of transcription, DNA-templated [GO:0006355]; response to gamma radiation [GO:0010332]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524] locus:2054011; AT2G18760 repair protein DNA excision repair protein CSB (EC 3.6.4.-) (Cockayne syndrome protein CSB) (OsCSB) Q7F2E4 CSB_ORYSJ CSB Os01g0102800 LOC_Os01g01312 P0402A09.26 P0455C04.20 P0672D08.47 FUNCTION: Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. Upon DNA-binding, it locally modifies DNA conformation by wrapping the DNA around itself, thereby modifying the interface between stalled RNA polymerase II and DNA. It is required for transcription-coupled repair complex formation. {ECO:0000250|UniProtKB:Q03468}. ENOG411DT6G F4ISE7 F4ISE7_ARATH DUF630 family protein (DUF630 and DUF632) 91818 DUF630 family protein (DUF630 and DUF632) locus:2059057; AT2G19090 Protein of unknown function (DUF630) Os08g0519750 protein (Fragment) A0A0P0XHX8 A0A0P0XHX8_ORYSJ Os08g0519750 OSNPB_080519750 ENOG411DT6D ROD1 Q9LVZ6,Q9LVZ7 PDCT2_ARATH,PDCT1_ARATH Phosphatidylcholine:diacylglycerol cholinephosphotransferase 2 (AtPDCT2) (EC 2.7.8.-),Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1 (AtPDCT1) (EC 2.7.8.-) (Protein REDUCED OLEATE DESATURATION 1) DISRUPTION PHENOTYPE: Reduction of 18:2 and 18:3 triacylglycerols (TAG) accumulation in seeds by 40 percent. {ECO:0000269|PubMed:19833868, ECO:0000269|PubMed:22932756}. decrease in 18:2 and 18:3 polyunsaturated fatty acids and a concomitant increase in 18:1 relative to wildtype Abnormal unsaturated fatty acid levels in seeds-J. Browse-2009 FUNCTION: Functions as phosphatidylcholine:diacylglycerol cholinephosphotransferase that catalyzes the transfer of the phosphocholine headgroup from phosphatidylcholine (PC) to diacylglycerol, a major reaction for the transfer of 18:1 into phosphatidylcholine for desaturation and also for the reverse transfer of 18:2 and 18:3 into the triacylglycerols synthesis pathway. {ECO:0000250}.,FUNCTION: Functions as phosphatidylcholine:diacylglycerol cholinephosphotransferase that catalyzes the transfer of the phosphocholine headgroup from phosphatidylcholine (PC) to diacylglycerol, a major reaction for the transfer of 18:1 into phosphatidylcholine for desaturation and also for the reverse transfer of 18:2 and 18:3 into the triacylglycerols synthesis pathway. {ECO:0000269|PubMed:19833868, ECO:0000269|PubMed:22371508, ECO:0000269|PubMed:22932756}. ARA:AT3G15820-MONOMER;MetaCyc:AT3G15820-MONOMER; 2.7.8.- 32691,32977 Phosphatidylcholine:diacylglycerol cholinephosphotransferase 2 (AtPDCT2) (EC 2.7.8.-),Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1 (AtPDCT1) (EC 2.7.8.-) (Protein REDUCED OLEATE DESATURATION 1) integral component of membrane [GO:0016021]; diacylglycerol cholinephosphotransferase activity [GO:0004142]; phosphatidylcholine metabolic process [GO:0046470] locus:2093272;,locus:2093257; AT3G15830,AT3G15820 NA Os06g0607100 protein (Phosphatidic acid phosphatase-like) (cDNA clone:J023088G11, full insert sequence) Q69Q38 Q69Q38_ORYSJ Os06g0607100 OSNPB_060607100 P0029C06.23 ENOG411DT6E SHBY A0A1P8BEF0,A0A1P8BEE1,A0A1P8BEE6,A0A1P8BED7,F4KII0,F4KIH9 A0A1P8BEF0_ARATH,A0A1P8BEE1_ARATH,A0A1P8BEE6_ARATH,A0A1P8BED7_ARATH,F4KII0_ARATH,F4KIH9_ARATH Vacuolar protein sorting-associated protein, putative (DUF1162) 384627,393607,368912,384205,389269,386458 Vacuolar protein sorting-associated protein, putative (DUF1162) ground tissue pattern formation [GO:1990064]; regulation of root meristem growth [GO:0010082]; root morphogenesis [GO:0010015] locus:2184565; AT5G24740 Protein of unknown function (DUF1162) Os08g0116566 protein A0A0P0XB32 A0A0P0XB32_ORYSJ Os08g0116566 OSNPB_080116566 ENOG411DT6X Q9SVS7 Q9SVS7_ARATH DUF2921 family protein, putative (DUF2921) (Uncharacterized protein AT4g21700) (Uncharacterized protein F17L22.160) 108895 DUF2921 family protein, putative (DUF2921) (Uncharacterized protein AT4g21700) (Uncharacterized protein F17L22.160) chloroplast [GO:0009507]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:2119078; AT4G21700 Protein of unknown function (DUF2921) Os05g0557500 protein (Fragment) A0A0P0WQ49 A0A0P0WQ49_ORYSJ Os05g0557500 OSNPB_050557500 ENOG411DT6R Q9CA24,A0A1P8AMN5,A0A1P8AMN6 Q9CA24_ARATH,A0A1P8AMN5_ARATH,A0A1P8AMN6_ARATH Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein; 12104-13574),Pathogenesis-related thaumatin superfamily protein 39536,36315,34280 Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein; 12104-13574),Pathogenesis-related thaumatin superfamily protein integral component of membrane [GO:0016021] locus:2203236; AT1G77700 THN Os04g0689900 protein (Fragment) A0A0P0WGN4 A0A0P0WGN4_ORYSJ Os04g0689900 OSNPB_040689900 ENOG411DT6S PDE338 Q9M9H4,A0A1P8ARX7 Q9M9H4_ARATH,A0A1P8ARX7_ARATH F14O23.10 protein (Nucleic acid-binding proteins superfamily),Nucleic acid-binding proteins superfamily Pigment defective embryo-D. Meinke-2011 56326,48141 F14O23.10 protein (Nucleic acid-binding proteins superfamily),Nucleic acid-binding proteins superfamily chloroplast [GO:0009507]; mRNA binding [GO:0003729]; plastid organization [GO:0009657],nucleic acid binding [GO:0003676] locus:2013051; AT1G71720 S1 RNA binding domain 30S ribosomal protein S1-like (Os01g0589000 protein) (cDNA clone:J013110C21, full insert sequence),Os05g0535800 protein Q5ZC75,A0A0P0WPT1 Q5ZC75_ORYSJ,A0A0P0WPT1_ORYSJ Os01g0589000 Os01g0589000 OSNPB_010589000 P0415C01.8,Os05g0535800 OSNPB_050535800 ENOG411DT6P IP5P8 Q0WT19,F4IQW9 IP5P8_ARATH,F4IQW9_ARATH Type I inositol polyphosphate 5-phosphatase 8 (At5PTase8) (EC 3.1.3.-),DNAse I-like superfamily protein R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.- 54621,45620 Type I inositol polyphosphate 5-phosphatase 8 (At5PTase8) (EC 3.1.3.-),DNAse I-like superfamily protein hydrolase activity [GO:0016787]; phosphatidylinositol dephosphorylation [GO:0046856] locus:2049826; AT2G37440 type I inositol-145-trisphosphate 5-phosphatase Os05g0114100 protein (Fragment) A0A0P0WH65 A0A0P0WH65_ORYSJ Os05g0114100 OSNPB_050114100 ENOG411DT6Q RBL10 F4ICF4 RBL10_ARATH RHOMBOID-like protein 10, chloroplastic (AtRBL10) (EC 3.4.21.-) DISRUPTION PHENOTYPE: Longer roots and increased number of lateral roots (PubMed:22416142). No effect on the appearance of plants or time of flowering (PubMed:22416142, PubMed:22738221). Reduced fertility (PubMed:22416142). Rbl10 and rbl11 double mutants have no visible phenotype (PubMed:22738221). {ECO:0000269|PubMed:22416142, ECO:0000269|PubMed:22738221}. FUNCTION: Rhomboid-type serine protease that catalyzes intramembrane proteolysis (PubMed:22416142, PubMed:22738221). Required for correct root growth, floral development, fertility and photoprotection (PubMed:22416142). May be involved in TIC22 processing during its import and in AOS accumulation in the chloroplast membrane (PubMed:22738221). {ECO:0000269|PubMed:22416142, ECO:0000269|PubMed:22738221}. 3.4.21.- 38222 RHOMBOID-like protein 10, chloroplastic (AtRBL10) (EC 3.4.21.-) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, seedlings, stems, flowers and immatures siliques. {ECO:0000269|PubMed:22416142}. locus:2032940; AT1G25290 Rhomboid family Os09g0454100 protein (Rhomboid-like protein) Q67UY4 Q67UY4_ORYSJ Os09g0454100 Os09g0454100 OsJ_29608 OSNPB_090454100 P0488D02.36 ENOG411DT6V CPK12,CPK4,CPK11 Q42396,Q38869,Q39016 CDPKC_ARATH,CDPK4_ARATH,CDPKB_ARATH Calcium-dependent protein kinase 12 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK9) (AtCDPK9),Calcium-dependent protein kinase 4 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 4),Calcium-dependent protein kinase 11 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK2) (AtCDPK2) DISRUPTION PHENOTYPE: Mutant cpk4-1 shows reduced ABA and salt responsiveness in seed germination. {ECO:0000269|PubMed:17921317}.,DISRUPTION PHENOTYPE: Mutant cpk11-2 shows reduced ABA and salt responsiveness in seed germination. {ECO:0000269|PubMed:17921317}. Insensitive to ABA; Resistant to salt-D. Zhang-2007,Sensitive to drought and salt; Insensitive to ABA-D. Zhang-2007 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000269|PubMed:8704134}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Functions as regulator of the calcium-mediated abscisic acid (ABA) signaling pathway. Phosphorylates ABA-responsive transcription factors ABF1 and ABF4 in vitro. Phosphorylates the nuclear zinc finger Di19 in vitro. {ECO:0000269|PubMed:16438971, ECO:0000269|PubMed:17921317}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Functions as regulator of the calcium-mediated abscisic acid (ABA) signaling pathway. Phosphorylates ABA-responsive transcription factors ABF1 and ABF4 in vitro. {ECO:0000269|PubMed:17921317, ECO:0000269|PubMed:8078458}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 55379,56416,55916 Calcium-dependent protein kinase 12 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK9) (AtCDPK9),Calcium-dependent protein kinase 4 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 4),Calcium-dependent protein kinase 11 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK2) (AtCDPK2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; protein autophosphorylation [GO:0046777],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of inward rectifier potassium channel activity [GO:1901979]; regulation of pollen tube growth [GO:0080092] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:8704134}. locus:2171726;,locus:2136917;,locus:2014691; AT5G23580,AT4G09570,AT1G35670 calcium-dependent protein kinase Calcium-dependent protein kinase 24 (OsCDPK24) (OsCPK24) (EC 2.7.11.1) (Calcium-dependent protein kinase OsCDPK14),Calcium-dependent protein kinase 28 (OsCDPK28) (OsCPK28) (EC 2.7.11.1) Q53P85,Q2QX45 CDPKO_ORYSJ,CDPKS_ORYSJ CPK24 Os11g0171500 LOC_Os11g07040 OsJ_33123,CPK28 Os12g0169800 LOC_Os12g07230 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Possesses calcium-dependent protein kinase activity in vitro (PubMed:16255173). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:16255173}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411DT6W YLS8 Q9FE62,A0A1P8BDD3 YLS8_ARATH,A0A1P8BDD3_ARATH Thioredoxin-like protein YLS8 (Protein YELLOW-LEAF-SPECIFIC GENE 8),mRNA splicing factor, thioredoxin-like U5 snRNP R-ATH-72163;R-ATH-72165; 16591,11896 Thioredoxin-like protein YLS8 (Protein YELLOW-LEAF-SPECIFIC GENE 8),mRNA splicing factor, thioredoxin-like U5 snRNP cytoplasm [GO:0005737]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; spliceosomal complex assembly [GO:0000245],spliceosomal complex [GO:0005681]; mRNA splicing, via spliceosome [GO:0000398] DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems, cauline leaves and flowers. {ECO:0000269|PubMed:11230571}. locus:2150768; AT5G08290 Thioredoxin-like protein Os07g0202300 protein (Os07g0202450 protein) (Os10g0486600 protein) (Putative dim1p) (Putative thioredoxin-like U5 small ribonucleoprotein particle protein) (Thioredoxin-like protein 4A, putative, expressed) (cDNA clone:001-121-D12, full insert sequence) (cDNA clone:J033122K22, full insert sequence) Q7X873 Q7X873_ORYSJ Os07g0202300 LOC_Os10g34520 Os07g0202450 Os10g0486600 OsJ_23479 OsJ_31953 OSJNBa0029C15.2 OSJNBa0081K20.16 OSNPB_070202300 OSNPB_100486600 P0431A02.2 ENOG411DT6T CPSF160 Q9FGR0,A0A1P8BES4,A0A1P8BEU6,A0A1P8BER9 CPSF1_ARATH,A0A1P8BES4_ARATH,A0A1P8BEU6_ARATH,A0A1P8BER9_ARATH Cleavage and polyadenylation specificity factor subunit 1 (Cleavage and polyadenylation specificity factor 160 kDa subunit) (AtCPSF160) (CPSF 160 kDa subunit),Cleavage and polyadenylation specificity factor 160 FUNCTION: CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction. {ECO:0000250|UniProtKB:Q10570}. R-ATH-72163;R-ATH-77595; 158075,135295,144355,143565 Cleavage and polyadenylation specificity factor subunit 1 (Cleavage and polyadenylation specificity factor 160 kDa subunit) (AtCPSF160) (CPSF 160 kDa subunit),Cleavage and polyadenylation specificity factor 160 cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378],nucleus [GO:0005634]; nucleic acid binding [GO:0003676] locus:2153122; AT5G51660 cleavage and polyadenylation specificity factor subunit Probable cleavage and polyadenylation specificity factor subunit 1 (Cleavage and polyadenylation specificity factor 160 kDa subunit) (CPSF 160 kDa subunit) Q7XWP1 CPSF1_ORYSJ Os04g0252200 LOC_Os04g18010 OSJNBa0032B23.5 FUNCTION: CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (By similarity). {ECO:0000250}. ENOG411DT6U PCMP-H14 Q9FND7 PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 68871 Putative pentatricopeptide repeat-containing protein At5g40405 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:1009023396; AT5G40405 repeat-containing protein Os01g0715700 protein A0A0P0V7C6 A0A0P0V7C6_ORYSJ Os01g0715700 OSNPB_010715700 ENOG411DT62 Q8GXB7 TRMB_ARATH tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) (tRNA (guanine(46)-N(7))-methyltransferase) (tRNA(m7G46)-methyltransferase) FUNCTION: Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. {ECO:0000255|HAMAP-Rule:MF_03055}. PATHWAY: tRNA modification; N(7)-methylguanine-tRNA biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03055}. 2.1.1.33 28818 tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) (tRNA (guanine(46)-N(7))-methyltransferase) (tRNA(m7G46)-methyltransferase) nucleus [GO:0005634]; tRNA methyltransferase complex [GO:0043527]; tRNA (guanine-N7-)-methyltransferase activity [GO:0008176]; tRNA binding [GO:0000049]; RNA (guanine-N7)-methylation [GO:0036265]; tRNA modification [GO:0006400] locus:2149443; AT5G24840 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (By similarity) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) (tRNA (guanine(46)-N(7))-methyltransferase) (tRNA(m7G46)-methyltransferase),Os06g0236900 protein (Fragment) Q67V78,Q0DDB5 TRMB_ORYSJ,Q0DDB5_ORYSJ Os06g0236900 LOC_Os06g12990 OsJ_20740 OSJNBa0068B06.2 OSJNBa0080E19.41,Os06g0236900 Os06g0236900 OSNPB_060236900 FUNCTION: Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. {ECO:0000255|HAMAP-Rule:MF_03055}. ENOG411DT63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotidyltransferase domain Nucleotidyltransferase domain containing protein, expressed (Os12g0283100 protein),Os07g0679400 protein (Fragment) Q2QTU0,A0A0P0XAF2 Q2QTU0_ORYSJ,A0A0P0XAF2_ORYSJ Os12g0283100 LOC_Os12g18530 Os12g0283100 OsJ_35772 OSNPB_120283100,Os07g0679400 OSNPB_070679400 ENOG411DT60 PCMP-H47 Q9LSL8 PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570 83681 Pentatricopeptide repeat-containing protein At5g65570 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2155740; AT5G65570 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DT61 Q9LTV6,Q9XE46,F4I386 DECR2_ARATH,Q9XE46_ARATH,F4I386_ARATH Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34),NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At2g07640),Uncharacterized protein FUNCTION: Auxiliary enzyme of beta-oxidation. Participates in the degradation of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions in peroxisome. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3-enoyl-CoA (By similarity). {ECO:0000250}. ARA:AT3G12800-MONOMER;,ARA:AT2G07640-MONOMER; R-ATH-390247; 1.3.1.34 31796,16846,22107 Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34),NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At2g07640),Uncharacterized protein peroxisome [GO:0005777]; vacuolar membrane [GO:0005774]; 2,4-dienoyl-CoA reductase (NADPH) activity [GO:0008670]; fatty acid metabolic process [GO:0006631] locus:2087770;,locus:3437247;,locus:2029194; AT3G12800,AT2G07640,AT1G36580 Peroxisomal 24-dienoyl-CoA OSJNBa0070C17.24 protein (Os04g0614000 protein) Q7XLC5 Q7XLC5_ORYSJ Os04g0614000 Os04g0614000 OSJNBa0070C17.24 OSNPB_040614000 ENOG411DT67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-N-acetylenolpyruvoylglucosamine reductase C-terminal domain NA NA NA NA NA NA NA ENOG411DT64 AKR4C10 Q84TF0 AKRCA_ARATH Aldo-keto reductase family 4 member C10 (EC 1.1.1.-) FUNCTION: Oxidoreductase that may act on a broad range of substrates such as ketosteroids, aldehydes, ketones and sugars. {ECO:0000250}. ARA:AT2G37790-MONOMER; R-ATH-156590;R-ATH-193144;R-ATH-193368;R-ATH-193775;R-ATH-193807;R-ATH-196108;R-ATH-2162123;R-ATH-5365859;R-ATH-5652227;R-ATH-5661270; 1.1.1.- 34913 Aldo-keto reductase family 4 member C10 (EC 1.1.1.-) cytosol [GO:0005829]; nucleus [GO:0005634]; oxidoreductase activity [GO:0016491] locus:2065639; AT2G37790 reductase family Os01g0847700 protein (Putative aldose reductase) (cDNA clone:J033138E18, full insert sequence),Os01g0847600 protein (Putative aldose reductase) (cDNA, clone: J090081K17, full insert sequence),Os05g0456200 protein,Os05g0456300 protein (cDNA clone:001-207-F04, full insert sequence),Os05g0456300 protein (Fragment) Q941T6,Q941T8,B9FKK0,B7EYZ0,A0A0P0WN55 Q941T6_ORYSJ,Q941T8_ORYSJ,B9FKK0_ORYSJ,B7EYZ0_ORYSJ,A0A0P0WN55_ORYSJ Os01g0847700 OsJ_26532 OSNPB_010847700 P0005H10.17,Os01g0847600 OsJ_26534 OSNPB_010847600 P0005H10.15,Os05g0456200 OsJ_18785 OSNPB_050456200,Os05g0456300 OSNPB_050456300 ENOG411DT65 Q8RXL0,A8MSE3 Q8RXL0_ARATH,A8MSE3_ARATH Protein YIPF 30708,30808 Protein YIPF integral component of membrane [GO:0016021],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; Rab GTPase binding [GO:0017137] locus:504955927; AT2G39805 Protein YIPF1 homolog Protein YIPF Q60EM1 Q60EM1_ORYSJ Os05g0455800 OJ1651_D06.12 OsJ_18782 OSNPB_050455800 ENOG411DVZM MOK9.4 Q9FJB4 Q9FJB4_ARATH At5g35460/MOK9_4 (Membrane protein) 44697 At5g35460/MOK9_4 (Membrane protein) integral component of membrane [GO:0016021] locus:2169533; AT5G35460 Protein of unknown function (DUF2838) Os01g0585100 protein (cDNA clone:J023028H21, full insert sequence) Q94D47 Q94D47_ORYSJ Os01g0585100 OSJNBb0024F06.26 OSNPB_010585100 P0712E02.13 ENOG411DVZN A0A1P8ASD8,A0A1P8ASA0,F4IDZ7 A0A1P8ASD8_ARATH,A0A1P8ASA0_ARATH,F4IDZ7_ARATH DNA repair metallo-beta-lactamase family protein R-ATH-5693571; 50234,46100,62144 DNA repair metallo-beta-lactamase family protein nuclear chromosome, telomeric region [GO:0000784]; 5'-3' exodeoxyribonuclease activity [GO:0035312]; damaged DNA binding [GO:0003684]; double-strand break repair via nonhomologous end joining [GO:0006303]; interstrand cross-link repair [GO:0036297]; protection from non-homologous end joining at telomere [GO:0031848] locus:505006131; AT1G19025 DNA repair metallo-beta-lactamase DNA ligase-like (Os01g0881400 protein),DNA ligase-like (Os08g0107600 protein) (cDNA clone:001-130-E03, full insert sequence) Q8RZQ7,Q6ZD68 Q8RZQ7_ORYSJ,Q6ZD68_ORYSJ Os01g0881400 B1065E10.3 OsJ_04301 OSNPB_010881400 P0018C10.62,Os08g0107600 Os08g0107600 OSNPB_080107600 P0450B04.22 ENOG411DVZI Q8LBV4 Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic (EC 2.1.1.-) 2.1.1.- 39387 Uncharacterized methyltransferase At1g78140, chloroplastic (EC 2.1.1.-) chloroplast [GO:0009507]; plastoglobule [GO:0010287]; methyltransferase activity [GO:0008168] locus:2194759; AT1G78140 ubiE/COQ5 methyltransferase family Os08g0411200 protein (cDNA clone:J023029G09, full insert sequence) Q0J5R5 Q0J5R5_ORYSJ Os08g0411200 Os08g0411200 OSNPB_080411200 ENOG411DVZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207),Os10g0577500 protein Q7XBU8,A0A0P0XY81 Q7XBU8_ORYSJ,A0A0P0XY81_ORYSJ OSJNBa0035H01.1 LOC_Os10g42670 Os10g0577500 OsJ_32583 OSJNBa0027L23.11 OSNPB_100577500,Os10g0577500 OSNPB_100577500 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DVZD emb2737 Q93W26,F4JYR0,F4JYR1,F4JYQ7,F4JYQ8 Q93W26_ARATH,F4JYR0_ARATH,F4JYR1_ARATH,F4JYQ7_ARATH,F4JYQ8_ARATH AT5g53860/K19P17_2 (Embryo defective 2737),Embryo defective 2737 Embryo defective; Cotyledon-D. Meinke-2003 48307,37334,46155,51194,52921 AT5g53860/K19P17_2 (Embryo defective 2737),Embryo defective 2737 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941] locus:2154669; AT5G53860 NA NA NA NA NA NA NA NA ENOG411DVZE RH5 Q9C551 RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 (EC 3.6.4.13) FUNCTION: ATP-dependent RNA helicase required for 60S ribosomal subunit synthesis. Involved in efficient pre-rRNA processing, predominantly at site A3, which is necessary for the normal formation of 25S and 5.8S rRNAs (By similarity). {ECO:0000250}. 3.6.4.13 59604 DEAD-box ATP-dependent RNA helicase 5 (EC 3.6.4.13) cytosol [GO:0005829]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364] locus:2034481; AT1G31970 RNA helicase DEAD-box ATP-dependent RNA helicase 5 (EC 3.6.4.13),Os07g0301200 protein (Fragment) Q6YS30,A0A0N7KNA6 RH5_ORYSJ,A0A0N7KNA6_ORYSJ Os07g0301200 LOC_Os07g20580 B1114D08.16-1,Os07g0301200 OSNPB_070301200 FUNCTION: ATP-dependent RNA helicase required for 60S ribosomal subunit synthesis. Involved in efficient pre-rRNA processing, predominantly at site A3, which is necessary for the normal formation of 25S and 5.8S rRNAs (By similarity). {ECO:0000250}. ENOG411DVZC Q8GZ60,A0A1P8B2X4 Q8GZ60_ARATH,A0A1P8B2X4_ARATH At2g26470 (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein) (Uncharacterized protein At2g26470/T9J22.14),Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein 55095,51307 At2g26470 (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein) (Uncharacterized protein At2g26470/T9J22.14),Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein locus:2066241; AT2G26470 Uncharacterised ACR COG2135 Os06g0470800 protein (cDNA clone:J033021D15, full insert sequence) Q0DC91 Q0DC91_ORYSJ Os06g0470800 Os06g0470800 OsJ_21312 OSNPB_060470800 ENOG411DVZX LECRKS1 Q9M9E0 LRKS1_ARATH L-type lectin-domain containing receptor kinase S.1 (LecRK-S.1) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici and to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms and higher bacterial proliferation. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}. 2.7.11.1 73146 L-type lectin-domain containing receptor kinase S.1 (LecRK-S.1) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229] locus:2196608; AT1G15530 Lectin-domain containing receptor kinase NA NA NA NA NA NA NA ENOG411DVZZ Q5XEV3,Q9C933,Q8LF31,F4JI90 Q5XEV3_ARATH,Q9C933_ARATH,Q8LF31_ARATH,F4JI90_ARATH At4g03410 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein),At1g52870/F14G24_14 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) (Uncharacterized protein F14G24.14),Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 36174,41331,34460,40973 At4g03410 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein),At1g52870/F14G24_14 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) (Uncharacterized protein F14G24.14),Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein integral component of membrane [GO:0016021],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021] locus:2011496;,locus:2128731; AT4G03410,AT1G52870 Peroxisomal membrane Os03g0583800 protein (Peroxisomal membrane protein, putative, expressed) (Putative peroxisomal membrane protein) (cDNA clone:J013000B17, full insert sequence) (cDNA clone:J013098D10, full insert sequence),Os09g0315000 protein (Fragment) Q75IB3,A0A0P0XKG0 Q75IB3_ORYSJ,A0A0P0XKG0_ORYSJ OJ1785_A05.29 LOC_Os03g38730 Os03g0583800 OSNPB_030583800,Os09g0315000 OSNPB_090315000 ENOG411DVZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os10g0370400 protein,Os11g0462500 protein A0A0P0XTE2,A0A0P0Y1V1 A0A0P0XTE2_ORYSJ,A0A0P0Y1V1_ORYSJ Os10g0370400 OSNPB_100370400,Os11g0462500 OSNPB_110462500 ENOG411DVZU Q8VYT6,A0A1P8AZY3 Q8VYT6_ARATH,A0A1P8AZY3_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g31740),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 84779,62349 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g31740),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2045253; AT2G31740 Methyltransferase-like protein OSJNBa0083D01.21 protein (Os04g0379300 protein),Os04g0379300 protein (Fragment) Q7XVE1,A0A0N7KIY0 Q7XVE1_ORYSJ,A0A0N7KIY0_ORYSJ Os04g0379300 Os04g0379300 OSJNBa0083D01.21 OSNPB_040379300,Os04g0379300 OSNPB_040379300 ENOG411DVZW ANN3 Q9SE45 ANXD3_ARATH Annexin D3 (AnnAt3) R-ATH-114608;R-ATH-6798695; 36255 Annexin D3 (AnnAt3) vacuole [GO:0005773]; calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed mainly in roots and flowers. Lower in stems and leaves. {ECO:0000269|PubMed:11457958}. locus:2064217; AT2G38760 annexin D3-like Annexin Q6L4C5,A0A0P0WLR9 Q6L4C5_ORYSJ,A0A0P0WLR9_ORYSJ Os05g0382900 OSJNBa0088M05.16 OSNPB_050382900,Os05g0382900 OSNPB_050382900 ENOG411DVZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Membrane transport protein Probable auxin efflux carrier component 3b (OsPIN3b) (OSPIN10b) Q6L5F6 PIN3B_ORYSJ PIN3B Os05g0576900 LOC_Os05g50140 OJ1126_B10.6 FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000305}. ENOG411DVZQ Q9SI77,A0A1P8AN01 Q9SI77_ARATH,A0A1P8AN01_ARATH At1g62730 (F23N19.9) (Terpenoid synthases superfamily protein),Terpenoid synthases superfamily protein 34032,30927 At1g62730 (F23N19.9) (Terpenoid synthases superfamily protein),Terpenoid synthases superfamily protein mitochondrion [GO:0005739]; transferase activity [GO:0016740]; biosynthetic process [GO:0009058]; mitochondrial respiratory chain complex I assembly [GO:0032981],transferase activity [GO:0016740]; biosynthetic process [GO:0009058] locus:2026182; AT1G62730 Squalene/phytoene synthase Os06g0104100 protein (cDNA clone:002-149-G11, full insert sequence) Q8H625 Q8H625_ORYSJ Os06g0104100 Os06g0104100 OsJ_19819 OSJNBa0075G19.38 OSNPB_060104100 ENOG411DVZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Transcription factor UDT1 (Basic helix-loop-helix protein 164) (OsbHLH164) (Protein UNDEVELOPED TAPETUM 1) B9FXT3 UDT1_ORYSJ UDT1 BHLH164 Os07g0549600 LOC_Os07g36460 OsJ_24663 P0534A03.125 DISRUPTION PHENOTYPE: Male sterility due to failure of tapetum to differentiate and pollen to mature. {ECO:0000269|PubMed:16141453}. FUNCTION: Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}. ENOG411DVZ5 Q9SH88 RRS1_ARATH Ribosome biogenesis regulatory protein homolog FUNCTION: Involved in ribosome biogenesis. {ECO:0000250}. 35531 Ribosome biogenesis regulatory protein homolog nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; ribosomal large subunit biogenesis [GO:0042273]; ribosomal large subunit export from nucleus [GO:0000055] locus:2065553; AT2G37990 ribosome biogenesis regulatory protein Ribosome biogenesis regulatory protein,Os06g0142050 protein (Fragment) Q7XPU3,A0A0P0WS34 Q7XPU3_ORYSJ,A0A0P0WS34_ORYSJ Os04g0685100 OsJ_16692 OSJNBa0088H09.13 OSNPB_040685100,Os06g0142050 OSNPB_060142050 FUNCTION: Involved in ribosomal large subunit assembly. {ECO:0000256|RuleBase:RU364132}. ENOG411DVZ6 AP22.73,MNF13.19 Q8GUM4,Q58FU6,Q84K38 Y3739_ARATH,Q58FU6_ARATH,Q84K38_ARATH Uncharacterized membrane protein At3g27390,Membrane protein,Transmembrane protein (Uncharacterized protein At5g40640) 65497,63337,64642 Uncharacterized membrane protein At3g27390,Membrane protein,Transmembrane protein (Uncharacterized protein At5g40640) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2086726;,locus:2114960;,locus:2168803; AT3G27390,AT4G37030,AT5G40640 NA OSJNBa0064H22.21 protein (Os04g0449500 protein) (cDNA clone:J023082L12, full insert sequence),Os04g0483200 protein (Fragment) Q7XTC6,A0A0P0WBS0 Q7XTC6_ORYSJ,A0A0P0WBS0_ORYSJ Os04g0449500 Os04g0449500 OsJ_14979 OSJNBa0064H22.21 OSNPB_040449500,Os04g0483200 OSNPB_040483200 ENOG411DVZ7 PPRD2,PPRD1,T28A8_130 Q9SI62,Q9CAH5,Q9LZG4,A0A1P8B2E4,A0A1P8B2I5 POED2_ARATH,POED1_ARATH,Q9LZG4_ARATH,A0A1P8B2E4_ARATH,A0A1P8B2I5_ARATH Polyprenol reductase 2 (EC 1.3.1.94),Polyprenol reductase 1 (EC 1.3.1.94),3-oxo-5-alpha-steroid 4-dehydrogenase family protein (Uncharacterized protein T28A8_130),3-oxo-5-alpha-steroid 4-dehydrogenase family protein DISRUPTION PHENOTYPE: Male sterility, when homozygous. Deformed and non-viable pollen grains. {ECO:0000269|PubMed:26628744}. FUNCTION: Plays a key role in early steps of protein N-linked glycosylation by being required for the conversion of polyprenol into dolichol. Dolichols are required for the synthesis of dolichol-linked monosaccharides and the oligosaccharide precursor used for N-glycosylation. Acts as a polyprenol reductase that promotes the reduction of the alpha-isoprene unit of polyprenols into dolichols in a NADP-dependent mechanism. Involved in the regulation of plant growth and reproductive processes. {ECO:0000269|PubMed:26628744}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. R-ATH-193048;R-ATH-446199; 1.3.1.94 38678,36313,9676,41453,36927 Polyprenol reductase 2 (EC 1.3.1.94),Polyprenol reductase 1 (EC 1.3.1.94),3-oxo-5-alpha-steroid 4-dehydrogenase family protein (Uncharacterized protein T28A8_130),3-oxo-5-alpha-steroid 4-dehydrogenase family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; polyprenol reductase activity [GO:0102389]; lipid metabolic process [GO:0006629]; protein N-linked glycosylation [GO:0006487],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; 3-oxo-5-alpha-steroid 4-dehydrogenase activity [GO:0003865]; polyprenol reductase activity [GO:0102389]; polyprenol metabolic process [GO:0016093]; protein glycosylation [GO:0006486],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:26628744}.,TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:26628744}. locus:2045126;,locus:2030235;,locus:2101079; AT2G16530,AT1G72590,AT3G43840 Plays a key role in early steps of protein N-linked glycosylation by being required for the conversion of polyprenol into dolichol. Dolichols are required for the synthesis of dolichol-linked monosaccharides and the oligosaccharide precursor used for N-glycosylation. Acts as a polyprenol reductase that promotes the reduction of the alpha-isoprene unit of polyprenols into dolichols in a NADP-dependent mechanism (By similarity) Polyprenol reductase 2 (EC 1.3.1.94),Polyprenol reductase 1 (EC 1.3.1.94),Os04g0576800 protein (Fragment) Q7F0Q2,Q7XUH5,A0A0P0WDX2 POED2_ORYSJ,POED1_ORYSJ,A0A0P0WDX2_ORYSJ Os07g0493400 LOC_Os07g31140 OsJ_24314 P0038F10.126,Os04g0576800 LOC_Os04g48750 OsJ_15866 OSJNBa0020J04.7,Os04g0576800 OSNPB_040576800 FUNCTION: Plays a key role in early steps of protein N-linked glycosylation by being required for the conversion of polyprenol into dolichol. Dolichols are required for the synthesis of dolichol-linked monosaccharides and the oligosaccharide precursor used for N-glycosylation. Acts as a polyprenol reductase that promotes the reduction of the alpha-isoprene unit of polyprenols into dolichols in a NADP-dependent mechanism (By similarity). {ECO:0000250}. ENOG411DVZ2 SFH9 F4J7S8,A0A178VMA9 SFH9_ARATH,A0A178VMA9_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 (Protein SEC FOURTEEN HOMOLOGS 9) (AtSFH9),Sec14p-like phosphatidylinositol transfer family protein FUNCTION: Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}. 66625,66754 Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 (Protein SEC FOURTEEN HOMOLOGS 9) (AtSFH9),Sec14p-like phosphatidylinositol transfer family protein Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; protein transport [GO:0015031] locus:2087293; AT3G24840 CRAL/TRIO N-terminal domain NA NA NA NA NA NA NA ENOG411DVZ3 NUDT20,NUDT24 Q8VXZ0,P0C026,F4K157 NUD20_ARATH,NUD24_ARATH,F4K157_ARATH Nudix hydrolase 20, chloroplastic (AtNUDT20) (EC 3.6.1.-),Nudix hydrolase 24, chloroplastic (AtNUDT24) (EC 3.6.1.-),Nudix hydrolase homolog 24 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}. ARA:AT5G19460-MONOMER;,ARA:AT5G19470-MONOMER; 3.6.1.- 41923,41056,41831 Nudix hydrolase 20, chloroplastic (AtNUDT20) (EC 3.6.1.-),Nudix hydrolase 24, chloroplastic (AtNUDT24) (EC 3.6.1.-),Nudix hydrolase homolog 24 chloroplast [GO:0009507]; 8-oxo-dGDP phosphatase activity [GO:0044715]; metal ion binding [GO:0046872],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in leaves and inflorescences. {ECO:0000269|PubMed:18815383}.,TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18815383}. locus:2150240;,locus:2150260; AT5G19460,AT5G19470 Nudix hydrolase Os09g0322200 protein A0A0P0XL58 A0A0P0XL58_ORYSJ Os09g0322200 OSNPB_090322200 ENOG411E6F4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os03g0111500 protein A0A0P0VS46 A0A0P0VS46_ORYSJ Os03g0111500 OSNPB_030111500 ENOG411EJ5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family NA NA NA NA NA NA NA ENOG411E96B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E96F AAP8,AAP1 O80592,Q42400,A0A1P8ATS1 AAP8_ARATH,AAP1_ARATH,A0A1P8ATS1_ARATH Amino acid permease 8 (Amino acid transporter AAP8),Amino acid permease 1 (Amino acid transporter AAP1) (Neutral amino acid transporter II),Amino acid permease 8 DISRUPTION PHENOTYPE: Reduced seed number and silique size correlated with a specifically altered amino acid composition of young siliques. {ECO:0000269|PubMed:17476526}.,DISRUPTION PHENOTYPE: No effect on plant growth or seed germination, but reduced seed weight and total seed yield. Resistant to toxic concentrations of amino acids in the growth medium. {ECO:0000269|PubMed:19392706}. no obvious phenotype endurance to toxic concentration of phenylalanine (2 mM) which did not influence development of roots and leaves of the mutant nor did a high level of phenylalanine (10 mM) arrested germination as observed in the wildtyp,reduced total N and carbon content and increased amino acid levels in mature and desiccated mutant seeds; elevated amino acid level in the seed coat/endosperm; increased number of protein bodies in the endosperm; decreased storage protein levels. Insensitive to exogenous amino acids-M. Tegeder-2007 FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids. {ECO:0000269|PubMed:17476526}.,FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake. {ECO:0000269|PubMed:17419840, ECO:0000269|PubMed:19392706, ECO:0000269|PubMed:7608199, ECO:0000269|PubMed:8281191, ECO:0000269|PubMed:8327465, ECO:0000269|PubMed:8356039}. MetaCyc:AT1G58360-MONOMER; 51815,52895,51947 Amino acid permease 8 (Amino acid transporter AAP8),Amino acid permease 1 (Amino acid transporter AAP1) (Neutral amino acid transporter II),Amino acid permease 8 integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; symporter activity [GO:0015293]; amino acid transport [GO:0006865],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; L-alanine transmembrane transporter activity [GO:0015180]; L-glutamate transmembrane transporter activity [GO:0005313]; L-glutamine transmembrane transporter activity [GO:0015186]; L-proline transmembrane transporter activity [GO:0015193]; L-serine transmembrane transporter activity [GO:0015194]; symporter activity [GO:0015293]; amino acid import [GO:0043090]; L-alanine transport [GO:0015808]; L-glutamate import across plasma membrane [GO:0098712]; response to nematode [GO:0009624],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Found in young seeds 2 to 5 days after fertilization, but not expressed in mature seeds. {ECO:0000269|PubMed:12244056}.,DEVELOPMENTAL STAGE: Expressed in endosperm during early stages of seed development. Strongly induced at heart stage of embryogenesis. {ECO:0000269|PubMed:9675899}. TISSUE SPECIFICITY: Expressed in flower buds, siliques, developing seeds and funiculi. {ECO:0000269|PubMed:12244056}.,TISSUE SPECIFICITY: Highly expressed in developing pods. Found in the endosperm and in the storage parenchyma and the outer epidermis cells of the developing embryo. Lower levels of expression in flowers, in the vascular system of the cotyledon and in the root epidermal cells, including root hairs and throughout the root tip. {ECO:0000269|PubMed:17419840, ECO:0000269|PubMed:19392706, ECO:0000269|PubMed:7608199, ECO:0000269|PubMed:8281191, ECO:0000269|PubMed:9675899}. locus:2201871;,locus:2016600; AT1G10010,AT1G58360 Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411E96G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EJUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EJUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UvrD/REP helicase N-terminal domain NA NA NA NA NA NA NA ENOG411EJUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoside transporter NA NA NA NA NA NA NA ENOG411EJUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dip2/Utp12 Family NA NA NA NA NA NA NA ENOG411EJUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S1 RNA binding domain NA NA NA NA NA NA NA ENOG411EJUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EJUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6Z7 Q8LCU9,Q9ZU37 Q8LCU9_ARATH,Q9ZU37_ARATH Mediator of RNA polymerase II transcription subunit (Uncharacterized protein At1g15010),Mediator of RNA polymerase II transcription subunit (Predicted by genscan and genefinder) (Uncharacterized protein At2g01300) 16459,17618 Mediator of RNA polymerase II transcription subunit (Uncharacterized protein At1g15010),Mediator of RNA polymerase II transcription subunit (Predicted by genscan and genefinder) (Uncharacterized protein At2g01300) integral component of membrane [GO:0016021]; defense response to fungus [GO:0050832],integral component of membrane [GO:0016021] locus:2196204;,locus:2038816; AT1G15010,AT2G01300 NA NA NA NA NA NA NA NA ENOG411E6Z2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF740) Os06g0218800 protein (cDNA clone:001-123-A11, full insert sequence) (cDNA clone:J033041B13, full insert sequence) Q69QA5 Q69QA5_ORYSJ Os06g0218800 OsJ_20611 OSNPB_060218800 P0436F11.9 P0644A02.33 ENOG411E6Z0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase rRNA N-glycosidase (EC 3.2.2.22),Os10g0382100 protein (Fragment) Q69S32,B9G746,C7J7D6,Q6Z425,Q10F32,A3A4C6 Q69S32_ORYSJ,B9G746_ORYSJ,C7J7D6_ORYSJ,Q6Z425_ORYSJ,Q10F32_ORYSJ,A3A4C6_ORYSJ Os07g0556800 Os07g0556800 OsJ_24709 OSJNBa0058I18.36 OSNPB_070556800,Os10g0570700 OsJ_32535 OSNPB_100570700,Os10g0382100 OSNPB_100382100,Os02g0149400 OsJ_05382 OSNPB_020149400 P0479D12.30,LOC_Os03g47896 Os03g0683300 OSNPB_030683300,Os02g0205900 OsJ_05828 OSNPB_020205900 ENOG411E6Z9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA A20-like zinc finger Zinc finger A20 and AN1 domain-containing stress-associated protein 3 (OsSAP3) Q5JN07 SAP3_ORYSJ SAP3 Os01g0765900 LOC_Os01g56040 P0403C05.31 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E6Z8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0254600 protein Q6EN51 Q6EN51_ORYSJ Os02g0254600 OSJNBa0052K15.3 OSNPB_020254600 P0463G12.38 ENOG411E6ZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411E6ZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0661650 protein A0A0P0V673 A0A0P0V673_ORYSJ Os01g0661650 OSNPB_010661650 ENOG411E6ZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0681300 protein (Fragment),Os05g0107801 protein A0A0P0X0D9,A0A0N7KK07 A0A0P0X0D9_ORYSJ,A0A0N7KK07_ORYSJ Os06g0681300 OSNPB_060681300,Os05g0107801 OSNPB_050107801 ENOG411E6ZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6ZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os02g0251800 protein,Os02g0251900 protein (cDNA clone:002-188-C03, full insert sequence),Os06g0530600 protein Q6K545,Q6K544,Q5Z6B2 Q6K545_ORYSJ,Q6K544_ORYSJ,Q5Z6B2_ORYSJ Os02g0251800 Os02g0251800 OJ1113_G05.28 OsJ_06101 OSJNBa0009N02.3 OSNPB_020251800,Os02g0251900 Os02g0251900 OJ1113_G05.29 OsJ_06102 OSJNBa0009N02.4 OSNPB_020251900,Os06g0530600 Os06g0530600 OSNPB_060530600 P0410C01.15 P0438E12.36 ENOG411E6ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein PBP1-like NA NA NA NA NA NA NA ENOG411E6ZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6ZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Translation initiation factor IF-1 NA NA NA NA NA NA NA ENOG411E7C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7C0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0176400 protein A0A0P0X2Q6 A0A0P0X2Q6_ORYSJ Os07g0176400 OSNPB_070176400 ENOG411E7C5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411EJGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os04g0441400 protein A0A0P0WAI2 A0A0P0WAI2_ORYSJ Os04g0441400 OSNPB_040441400 ENOG411E7CA THI2.2 Q9C8D6,Q42597,Q8VZK8 THN24_ARATH,THN22_ARATH,THN23_ARATH Probable thionin-2.4 [Cleaved into: Probable thionin-2.4; Acidic protein],Thionin-2.2 [Cleaved into: Thionin-2.2; Acidic protein],Probable thionin-2.3 [Cleaved into: Probable thionin-2.3; Acidic protein] FUNCTION: Thionins are small plant proteins which are toxic to animal cells. They seem to exert their toxic effect at the level of the cell membrane. Their precise function is not known. 14147,14178,14259 Probable thionin-2.4 [Cleaved into: Probable thionin-2.4; Acidic protein],Thionin-2.2 [Cleaved into: Thionin-2.2; Acidic protein],Probable thionin-2.3 [Cleaved into: Probable thionin-2.3; Acidic protein] extracellular region [GO:0005576]; defense response [GO:0006952] TISSUE SPECIFICITY: Low basal expression in seedlings. Also detected in rosette leaves. {ECO:0000269|PubMed:8552715}. locus:2013835;,locus:2167504;,locus:2055797; AT1G66100,AT5G36910,AT2G15010 Thionins are small plant proteins which are toxic to animal cells. They seem to exert their toxic effect at the level of the cell membrane. Their precise function is not known NA NA NA NA NA NA NA ENOG411EJGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E7CG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7CJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0463401 protein Q6K4Y2 Q6K4Y2_ORYSJ Os02g0463401 OsJ_06650 OSJNBa0035A24.17 OSNPB_020463401 ENOG411DPWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0927200 protein A0A0P0VCB0 A0A0P0VCB0_ORYSJ Os01g0927200 OSNPB_010927200 ENOG411DWEX LAX3 Q9CA25 LAX3_ARATH Auxin transporter-like protein 3 (AUX1-like protein 3) FUNCTION: Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex (By similarity). {ECO:0000250}. 53305 Auxin transporter-like protein 3 (AUX1-like protein 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; auxin influx transmembrane transporter activity [GO:0010328]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; lateral root formation [GO:0010311]; response to auxin [GO:0009733]; root cap development [GO:0048829] locus:2203226; AT1G77690 auxin transporter-like protein Putative auxin transporter-like protein 4 Q53JG7 LAX14_ORYSJ Os11g0169200 LOC_Os11g06820 FUNCTION: Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity). {ECO:0000250}. ENOG411DWEY ATP5 Q96251,B9DGP8 ATPO_ARATH,B9DGP8_ARATH ATP synthase subunit O, mitochondrial (Oligomycin sensitivity conferral protein) (OSCP),AT5G13450 protein (Delta subunit of Mt ATP synthase) FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. 26322,21083 ATP synthase subunit O, mitochondrial (Oligomycin sensitivity conferral protein) (OSCP),AT5G13450 protein (Delta subunit of Mt ATP synthase) chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; cobalt ion binding [GO:0050897]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; zinc ion binding [GO:0008270]; ATP synthesis coupled proton transport [GO:0015986],proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986] locus:2181625; AT5G13450 atp synthase Os06g0646500 protein (Putative ATP synthase delta chain) (cDNA clone:J023086I22, full insert sequence) Q67W57 Q67W57_ORYSJ Os06g0646500 OJ1226_A12.17 OsJ_22153 OSJNBa0062J02.1 OSNPB_060646500 ENOG411DWEZ SBT1.8 Q9ZUF6 SBT18_ARATH Subtilisin-like protease SBT1.8 (EC 3.4.21.-) (Subtilase subfamily 1 member 8) (AtSBT1.8) ARA:AT2G05920-MONOMER; 3.4.21.- 80015 Subtilisin-like protease SBT1.8 (EC 3.4.21.-) (Subtilase subfamily 1 member 8) (AtSBT1.8) cell wall [GO:0005618]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; serine-type endopeptidase activity [GO:0004252] locus:2064696; AT2G05920 Peptidase inhibitor I9 Os09g0441000 protein (Putative serine protease),Os10g0394200 protein (Fragment) Q69P78,A0A0P0XUA3 Q69P78_ORYSJ,A0A0P0XUA3_ORYSJ Os09g0441000 OJ1344_B01.33 OsJ_29522 OSNPB_090441000,Os10g0394200 OSNPB_100394200 ENOG411DWET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aquaporin NA NA NA NA NA NA NA ENOG411DWEU MRA19.19 F4KEM4,F4KEM5 F4KEM4_ARATH,F4KEM5_ARATH Transducin/WD40 repeat-like superfamily protein 39505,36599 Transducin/WD40 repeat-like superfamily protein locus:2171953; AT5G45760 WD domain G-beta repeat Os01g0205100 protein (Putative G-protein beta) (cDNA clone:J033109B05, full insert sequence) Q5QNL8 Q5QNL8_ORYSJ Os01g0205100 OSNPB_010205100 P0451C06.21 ENOG411DWEV PBF1 P42742,F4JD01 PSB1_ARATH,F4JD01_ARATH Proteasome subunit beta type-1 (EC 3.4.25.1) (20S proteasome beta subunit F-1) (Proteasome component 5) (Proteasome subunit beta type-6) (TAS-F22/FAFP98) (TAS-G39.20),Proteasome subunit beta type (EC 3.4.25.1) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 24644,24685 Proteasome subunit beta type-1 (EC 3.4.25.1) (20S proteasome beta subunit F-1) (Proteasome component 5) (Proteasome subunit beta type-6) (TAS-F22/FAFP98) (TAS-G39.20),Proteasome subunit beta type (EC 3.4.25.1) apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; defense response to fungus, incompatible interaction [GO:0009817]; proteolysis involved in cellular protein catabolic process [GO:0051603],cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex [GO:0005839]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603] DEVELOPMENTAL STAGE: Expressed at maximal levels after first day of cell growth. TISSUE SPECIFICITY: Present in all tissues examined. Slightly lower levels in roots. {ECO:0000269|PubMed:7987412}. locus:2101846; AT3G60820 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Proteasome subunit beta type-1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6),Proteasome subunit beta type (EC 3.4.25.1) O64464,Q6ZIB4 PSB1_ORYSJ,Q6ZIB4_ORYSJ PBF1 Os09g0505600 LOC_Os09g32800 OsJ_29931,Os08g0529100 OJ1770_H02.17 OsJ_28037 OSNPB_080529100 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. ENOG411DWEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 Beta-glucosidase 7 (Os3bglu7) (EC 3.2.1.21),Os03g0703000 protein (Fragment) Q75I93,A0A0P0W1U0 BGL07_ORYSJ,A0A0P0W1U0_ORYSJ BGLU7 BGLU1 Os03g0703000 LOC_Os03g49600 OSJNBa0004L11.16,Os03g0703000 OSNPB_030703000 FUNCTION: Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-mannoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, oligosaccharides, pyridoxine beta-D-glucoside and the cyanogenic glucosides amygdalin, prunasin and dhurrin. Possesses pyridoxine transglucosylation activity. {ECO:0000269|PubMed:14692878, ECO:0000269|PubMed:18308333, ECO:0000269|PubMed:19766588}. ENOG411DWEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA arogenate dehydrogenase 1 chloroplastic-like NA NA NA NA NA NA NA ENOG411DWER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tub family Tubby-like F-box protein 8 (OsTLP8) (Tubby-like F-box protein 1) (OsTLP1),Tubby-like F-box protein 13 (OsTLP13) (Tubby-like F-box protein 6) (OsTLP6),Tubby-like F-box protein 14 (OsTLP14) (Tubby-like F-box protein 4) (OsTLP4),Tubby-like F-box protein 3 (OsTLP3) (Tubby-like F-box protein 5) (OsTLP5),Tubby-like F-box protein (Fragment) Q75HX5,Q53PP5,Q2QXB2,Q8LJA9,A0A0P0WMT2 TLP8_ORYSJ,TLP13_ORYSJ,TLP14_ORYSJ,TLP3_ORYSJ,A0A0P0WMT2_ORYSJ TULP8 TULP1 Os05g0437900 LOC_Os05g36190 OJ1058_F05.11 OsJ_017918 OsJ_18676 OSJNBb0042J17.6,TULP13 TULP6 Os11g0163600 LOC_Os11g06420 OsJ_33072,TULP14 TULP4 Os12g0163400 LOC_Os12g06630 OsJ_033954,TULP3 TULP5 Os01g0866800 LOC_Os01g64700 OsJ_004102 P0505D12.45,Os05g0437900 OSNPB_050437900 ENOG411DWES HVT1,NIH F4INY4,F4IDQ6,A0A1P8ASP8,A0A1P8B2Y4 HVT1_ARATH,NIH_ARATH,A0A1P8ASP8_ARATH,A0A1P8B2Y4_ARATH DExH-box ATP-dependent RNA helicase DExH6 (EC 3.6.4.13) (Protein HELICASE IN VASCULAR TISSUE AND TAPETUM) (EC 3.6.4.12),DExH-box ATP-dependent RNA helicase DExH2 (EC 3.6.4.13) (DEIH-box RNA/DNA helicase) (EC 3.6.4.12),Nuclear DEIH-boxhelicase,Helicase in vascular tissue and tapetum FUNCTION: May function as an ATP-dependent RNA/DNA helicase. {ECO:0000250|UniProtKB:F4IDQ6}.,FUNCTION: May function as an ATP-dependent RNA/DNA helicase. Binds DNA in vitro in a non-specific manner. {ECO:0000269|PubMed:10471743}. 3.6.4.13; 3.6.4.12 144479,174510,171548,106041 DExH-box ATP-dependent RNA helicase DExH6 (EC 3.6.4.13) (Protein HELICASE IN VASCULAR TISSUE AND TAPETUM) (EC 3.6.4.12),DExH-box ATP-dependent RNA helicase DExH2 (EC 3.6.4.13) (DEIH-box RNA/DNA helicase) (EC 3.6.4.12),Nuclear DEIH-boxhelicase,Helicase in vascular tissue and tapetum cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; helicase activity [GO:0004386]; RNA binding [GO:0003723]; RNA processing [GO:0006396],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; RNA binding [GO:0003723]; DNA metabolic process [GO:0006259]; RNA processing [GO:0006396],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],helicase activity [GO:0004386] TISSUE SPECIFICITY: Specifically expressed in the tapetum and vascular tissues. {ECO:0000269|PubMed:9225469}. locus:2052841;,locus:2009200; AT2G30800,AT1G06670 helicase Os01g0767700 protein (Putative DEIH-box RNA/DNA helicase),Os01g0767700 protein (Fragment),Os01g0767700 protein Q5ZAP0,A0A0P0V8L0,A0A0P0V8M0 Q5ZAP0_ORYSJ,A0A0P0V8L0_ORYSJ,A0A0P0V8M0_ORYSJ Os01g0767700 B1143G03.7-1 Os01g0767700 OSJNBb0053G03.21-1 OSNPB_010767700,Os01g0767700 OSNPB_010767700 ENOG411DWEM SOV Q0WPN0 DI32L_ARATH Inactive exonuclease DIS3L2 (DIS3-like exonuclease 2) (Protein SUPPRESSOR OF VARICOSE) (RRP44 homolog B) (Ribosomal RNA-processing protein 44 homolog B) (AtRRP44B) FUNCTION: Probable inactive 3'-5'-exoribonuclease. Is unable to complement the growth defect of a yeast mutant lacking RRP44 exonuclease (PubMed:24244451). {ECO:0000269|PubMed:20798041, ECO:0000269|PubMed:24244451}. 116843 Inactive exonuclease DIS3L2 (DIS3-like exonuclease 2) (Protein SUPPRESSOR OF VARICOSE) (RRP44 homolog B) (Ribosomal RNA-processing protein 44 homolog B) (AtRRP44B) exosome (RNase complex) [GO:0000178]; P-body [GO:0000932]; 3'-5'-exoribonuclease activity [GO:0000175]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; RNA catabolic process [GO:0006401]; rRNA processing [GO:0006364] locus:2203231; AT1G77680 DIS3-like exonuclease 2-like DIS3-like exonuclease 2 (EC 3.1.13.-) Q6Z6A3 Q6Z6A3_ORYSJ Os02g0754100 OSNPB_020754100 P0627E03.8 FUNCTION: 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. {ECO:0000256|HAMAP-Rule:MF_03045}. ENOG411DWEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os07g0635700 protein (Putative cytochrome P450),Cytochrome P450 family protein, expressed (Os03g0370900 protein) (Putative cytochrome P450-related protein) (cDNA clone:J013170M24, full insert sequence),Os07g0635500 protein (Putative cytochrome P450) (cDNA clone:001-207-A08, full insert sequence) (cDNA clone:J033083C10, full insert sequence),Os06g0191800 protein (Fragment),Os07g0418500 protein (Putative cytochrome P450) (cDNA clone:J013166A09, full insert sequence),Os07g0635200 protein (Putative cytochrome P450),Os07g0635300 protein (Fragment),Os07g0419100 protein,Os03g0371400 protein (Fragment),Os03g0371000 protein (Fragment),Os07g0418500 protein,Os03g0371300 protein,Os06g0191700 protein,Os03g0371350 protein,Os07g0419000 protein,Os06g0189200 protein (Fragment) Q8LIR1,Q10KT5,Q8LIR5,Q0DDX8,Q8LHV0,Q8L4Q4,Q0D4C4,Q0D6Y5,Q0DRM0,A0A0P0VXW6,A0A0P0X525,A0A0P0VYR5,A0A0P0WTY0,A0A0P0VXV8,A0A0P0X5J7,A0A0P0WTV9 Q8LIR1_ORYSJ,Q10KT5_ORYSJ,Q8LIR5_ORYSJ,Q0DDX8_ORYSJ,Q8LHV0_ORYSJ,Q8L4Q4_ORYSJ,Q0D4C4_ORYSJ,Q0D6Y5_ORYSJ,Q0DRM0_ORYSJ,A0A0P0VXW6_ORYSJ,A0A0P0X525_ORYSJ,A0A0P0VYR5_ORYSJ,A0A0P0WTY0_ORYSJ,A0A0P0VXV8_ORYSJ,A0A0P0X5J7_ORYSJ,A0A0P0WTV9_ORYSJ OJ1332_C12.118 Os07g0635700 OSNPB_070635700,LOC_Os03g25480 Os03g0370900 OsJ_11003 OSJNBa0013M12.7 OSNPB_030370900,OJ1332_C12.113 Os07g0635500 OsJ_25271 OSNPB_070635500,Os06g0191800 Os06g0191800 OSNPB_060191800,P0025D09.112 Os07g0418500 OSNPB_070418500,P0455H11.125 OJ1332_C12.109 Os07g0635200 OSNPB_070635200,Os07g0635300 Os07g0635300 OSNPB_070635300,Os07g0419100 Os07g0419100 OSNPB_070419100,Os03g0371400 OSNPB_030371400,Os03g0371000 OSNPB_030371000,Os07g0418500 OSNPB_070418500,Os03g0371300 OSNPB_030371300,Os06g0191700 OSNPB_060191700,Os03g0371350 OSNPB_030371350,Os07g0419000 OSNPB_070419000,Os06g0189200 OSNPB_060189200 ENOG411DWEH PARN,AHG2 Q9LG26,A0A1P8AUW2 PARN_ARATH,A0A1P8AUW2_ARATH Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate-specific ribonuclease) (AtPARN) (Protein ABA hypersensitive germination 2),Polynucleotidyl transferase, ribonuclease H-like superfamily protein Hypersensitive to exogenous and endogenous ABA during germination due to accumulation of high levels of ABA. The lengths of the main root hypocotyl and stem of ahg2-1 were significantly shorter than those of the wild type. The growth rate of the main root was apparently reduced. The leaf size (length and width) in ahg2-1 was reduced to just over half but the number of rosette leaves was not affected markedly. The reduced size of the ahg2-1 plant is due mainly to the reduced cell size not to a reduced number of cells. Fertility was not affected. Sensitive to salicylic acid Embryo defective-P. Green; D. Belostotsky-2004 FUNCTION: 3'-exoribonuclease that has a preference for poly(A) tails of mRNAs, thereby efficiently degrading poly(A) tails. Exonucleolytic degradation of the poly(A) tail is often the first step in the decay of eukaryotic mRNAs. Essential for early development, possibly by participating in silencing certain maternal mRNAs translationally. May have a pivotal role in stress response. {ECO:0000269|PubMed:15019988, ECO:0000269|PubMed:15247430, ECO:0000269|PubMed:16359390}. R-ATH-450604; 3.1.13.4; 3.1.13.4 78010,42668 Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate-specific ribonuclease) (AtPARN) (Protein ABA hypersensitive germination 2),Polynucleotidyl transferase, ribonuclease H-like superfamily protein mitochondrion [GO:0005739]; nucleus [GO:0005634]; cation binding [GO:0043169]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; defense response [GO:0006952]; mRNA processing [GO:0006397]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] TISSUE SPECIFICITY: Widely expressed. Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:15019988, ECO:0000269|PubMed:15247430}. locus:2012100; AT1G55870 poly(A)-specific ribonuclease Os04g0467400 protein C7J0V5 C7J0V5_ORYSJ Os04g0467400 Os04g0467400 OSNPB_040467400 ENOG411DWEI Q8GXB4 WTR2_ARATH WAT1-related protein At1g09380 40658 WAT1-related protein At1g09380 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2012255; AT1G09380 auxin-induced protein WAT1-related protein,Os01g0296900 protein Q5JNG4,A0A0P0V1I3 Q5JNG4_ORYSJ,A0A0P0V1I3_ORYSJ Os01g0297700 Os01g0297700 OsJ_01420 OSJNBa0025P13.26 OSNPB_010297700 P0487H02.4,Os01g0296900 OSNPB_010296900 ENOG411DWEJ MUG7 Q9M9L2 Q9M9L2_ARATH F10A16.15 protein (MuDR family transposase) (Uncharacterized protein At3g05850) 87637 F10A16.15 protein (MuDR family transposase) (Uncharacterized protein At3g05850) zinc ion binding [GO:0008270] Pfam:MuDR Os02g0192200 protein (cDNA clone:J033000H11, full insert sequence) (cDNA clone:J033063L15, full insert sequence),Os10g0104700 protein (Fragment),Os06g0632700 protein (cDNA clone:J033026P12, full insert sequence),Os06g0632700 protein (Fragment) Q0E362,Q0IZD0,Q0DAT1,A0A0P0WZB9 Q0E362_ORYSJ,Q0IZD0_ORYSJ,Q0DAT1_ORYSJ,A0A0P0WZB9_ORYSJ Os02g0192200 Os02g0192200 OsJ_05714 OSNPB_020192200,Os10g0104700 OSNPB_100104700,Os06g0632700 Os06g0632700 OSNPB_060632700,Os06g0632700 OSNPB_060632700 ENOG411DWEK NIP5-1,NIP6-1 Q9SV84,Q9SAI4 NIP51_ARATH,NIP61_ARATH Probable aquaporin NIP5-1 (NOD26-like intrinsic protein 5-1) (AtNIP5;1) (Nodulin-26-like major intrinsic protein 6) (NodLikeMip6) (Protein NLM6),Aquaporin NIP6-1 (NOD26-like intrinsic protein 6-1) (AtNIP6;1) DISRUPTION PHENOTYPE: Plants display lower boric acid uptake into roots, lower biomass production, and increased sensitivity of root and shoot development to boron deficiency. {ECO:0000269|PubMed:16679457}. Inhibition root shoot flowers and siliques growth when Boron was supplied at concentrations of <10 uM.,Under conditions of low boron nip6;1-2 mutants have smaller darker green and more irregularly shaped young rosette leaves than wild type plants. These leaves have smaller cells and lack intercellular air spaces. Lower boron levels accumulate in these young rosette leaves and in stems with shoot apicies when nip6;1-2 mutants are grown under low boron conditions but wild type levels of boron accumulate when these plants are grown with sufficient boron. Even under low boron conditions there are no significant differences in boron levels between wild type and mutant plants in mature leaves. In addition under normal boron conditions the leaves of nip6;1-2 mutants grow normally and accumulate wild type levels of boron.,Under conditions of low boron nip6;1-3 mutants have smaller darker green and more irregularly shaped young rosette leaves than wild type plants. Sensitive to limited boron-T. Fujiwara-2006,Young leaf growth sensitive to limited and elevated boron-T. Fujiwara-2008 FUNCTION: Boric acid transporter. Low water transport activity. Plays an important role as plasma membrane boric acid channel for the boron uptake required for plant growth and development under boron limitation. {ECO:0000269|PubMed:16679457}.,FUNCTION: Transports glycerol, urea and formamide, in Xenopus laevis oocytes. Very low water transport activity. {ECO:0000269|PubMed:16363796}. 31493,31845 Probable aquaporin NIP5-1 (NOD26-like intrinsic protein 5-1) (AtNIP5;1) (Nodulin-26-like major intrinsic protein 6) (NodLikeMip6) (Protein NLM6),Aquaporin NIP6-1 (NOD26-like intrinsic protein 6-1) (AtNIP6;1) integral component of plasma membrane [GO:0005887]; lateral plasma membrane [GO:0016328]; plasma membrane [GO:0005886]; arsenite transmembrane transporter activity [GO:0015105]; borate transmembrane transporter activity [GO:0046715]; borate uptake transmembrane transporter activity [GO:0080138]; water channel activity [GO:0015250]; arsenite transport [GO:0015700]; borate transport [GO:0046713]; cellular response to boron-containing substance levels [GO:0080029]; response to arsenic-containing substance [GO:0046685]; response to boron-containing substance [GO:0010036],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; borate transmembrane transporter activity [GO:0046715]; glycerol transmembrane transporter activity [GO:0015168]; urea transmembrane transporter activity [GO:0015204]; borate transport [GO:0046713]; cellular response to boron-containing substance levels [GO:0080029] TISSUE SPECIFICITY: Expressed in rosette leaves. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:11806824}. locus:2122829;,locus:2025822; AT4G10380,AT1G80760 Aquaporin Aquaporin NIP3-1 (NOD26-like intrinsic protein 3-1) (OsNIP3;1) Q0IWF3 NIP31_ORYSJ NIP3-1 Os10g0513200 LOC_Os10g36924 OsJ_030877 OSJNBa0026L12.23 OSJNBa0026L12.32 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411DWED Q84WJ9 Q84WJ9_ARATH At5g19680 (Leucine-rich repeat (LRR) family protein) (Uncharacterized protein At5g19680) FUNCTION: Inhibitor of protein-phosphatase 1 (PP1). Binds to and inhibits PP1 activity. {ECO:0000250|UniProtKB:Q9LTK0}. 36985 At5g19680 (Leucine-rich repeat (LRR) family protein) (Uncharacterized protein At5g19680) locus:2183144; AT5G19680 Protein phosphatase 1 regulatory subunit Os02g0230100 protein (Putative sds22) (cDNA clone:J033039E09, full insert sequence) Q6H527 Q6H527_ORYSJ Os02g0230100 OsJ_05977 OSJNBb0035N08.27 OSNPB_020230100 ENOG411DWEE Q9LTK1 Q9LTK1_ARATH At5g52190 (Sugar isomerase (SIS) family protein) 22277 At5g52190 (Sugar isomerase (SIS) family protein) carbohydrate derivative binding [GO:0097367]; isomerase activity [GO:0016853]; carbohydrate derivative metabolic process [GO:1901135] locus:2145136; AT5G52190 3-hexulose-6-phosphate isomerase-like OSJNBb0032E06.2 protein (Os04g0568600 protein) Q7XRX4 Q7XRX4_ORYSJ Os04g0568600 Os04g0568600 OSJNBb0032E06.2 OSNPB_040568600 ENOG411DWEF CALS7,CalS7 Q9SHJ3,E9KSP0 CALS7_ARATH,E9KSP0_ARATH Callose synthase 7 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 7),Callose synthase 7 (EC 2.4.1.34) (Glucan synthase-like 7) Callose deposition in the phloem especially in the sieve elements is greatly redicued in cs7-1. During sieve lement development callose fails to accumulate in the plasmodesmata of incipient sieve plates resulting in the formation of sieve plates with less pores and no callose. Wounding can induce callose accumulation in leaves of cs7-1 but cannot induce callose accumulation in the sieve plates in this mutant. The mutant plants exhibite moderate reduction in seedling height and produce aberrant pollen grains and short siliques with aborted embryos. Short roots and inflorescence stems; Reduced fertility-Z. Hong-2011 FUNCTION: Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals (By similarity). {ECO:0000250}. ARA:AT1G06490-MONOMER;MetaCyc:AT1G06490-MONOMER; 2.4.1.34 228032,224975 Callose synthase 7 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 7),Callose synthase 7 (EC 2.4.1.34) (Glucan synthase-like 7) 1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; callose deposition in phloem sieve plate [GO:0080165]; cell wall organization [GO:0071555]; phloem transport [GO:0010233]; regulation of cell shape [GO:0008360],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075] locus:2009185; AT1G06490 callose synthase Callose synthase 1 catalytic subunit-like protein (Os01g0533500 protein),Os01g0533800 protein Q5JLH4,A0A0N7KD37 Q5JLH4_ORYSJ,A0A0N7KD37_ORYSJ Os01g0533500 Os01g0533500 OJ1029_F04.6 OJ1619_F12.27 OSNPB_010533500,Os01g0533800 OSNPB_010533800 ENOG411DWEG A0A1P8AMP4,A0A1P8AMQ1,A0A1P8AMP6,A0A1P8AMQ8,F4HWS2 A0A1P8AMP4_ARATH,A0A1P8AMQ1_ARATH,A0A1P8AMP6_ARATH,A0A1P8AMQ8_ARATH,F4HWS2_ARATH Calcium-dependent lipid-binding family protein 460331,464912,462949,457430,462011 Calcium-dependent lipid-binding family protein chloroplast [GO:0009507]; plasmodesma [GO:0009506] locus:2020901; AT1G48090 Plant protein of unknown function (DUF946) NA NA NA NA NA NA NA ENOG411DWEA PCMP-H41 Q9SHZ8 PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 88033 Pentatricopeptide repeat-containing protein At2g22070 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2055919; AT2G22070 Pentatricopeptide repeat-containing protein Os03g0775400 protein (Pentatricopeptide, putative, expressed) (cDNA clone:002-126-H10, full insert sequence) Q8H8N2 Q8H8N2_ORYSJ LOC_Os03g56400 Os03g0775400 OSJNBa0070N04.15 OSNPB_030775400 ENOG411DWEB Q8RY80,A0A1P8AMY6 Q8RY80_ARATH,A0A1P8AMY6_ARATH MBOAT (Membrane bound O-acyl transferase) family protein (Uncharacterized protein At1g57600),MBOAT (Membrane bound O-acyl transferase) family protein 62792,45672 MBOAT (Membrane bound O-acyl transferase) family protein (Uncharacterized protein At1g57600),MBOAT (Membrane bound O-acyl transferase) family protein integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2206500; AT1G57600 membrane-bound O-acyltransferase C24H6.01c-like Os05g0144000 protein Q0DKT8 Q0DKT8_ORYSJ Os05g0144000 Os05g0144000 OSNPB_050144000 ENOG411DWEC WIN1 Q9M8M7 ARGD_ARATH Acetylornithine aminotransferase, chloroplastic/mitochondrial (ACOAT) (EC 2.6.1.11) (Acetylornithine transaminase) (AOTA) (Protein HOPW1-1-INTERACTING 1) FUNCTION: Involved in the biosynthesis of citrulline (By similarity). Essential gene that modulates defense response to pathogenic bacteria, conferring susceptibility and repressing salicylic acid (SA) accumulation. {ECO:0000250, ECO:0000269|PubMed:18266921}. PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4. ARA:AT1G80600-MONOMER; 2.6.1.11 48827 Acetylornithine aminotransferase, chloroplastic/mitochondrial (ACOAT) (EC 2.6.1.11) (Acetylornithine transaminase) (AOTA) (Protein HOPW1-1-INTERACTING 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; identical protein binding [GO:0042802]; N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity [GO:0003992]; pyridoxal phosphate binding [GO:0030170]; arginine biosynthetic process [GO:0006526]; defense response to bacterium [GO:0042742]; interspecies interaction between organisms [GO:0044419]; primary root development [GO:0080022]; root development [GO:0048364] locus:2198948; AT1G80600 Acetylornithine aminotransferase Os07g0461900 protein (Fragment),Os05g0129100 protein (Fragment) Q0D6N1,A0A0P0WHN0 Q0D6N1_ORYSJ,A0A0P0WHN0_ORYSJ Os07g0461900 Os07g0461900 OSNPB_070461900,Os05g0129100 OSNPB_050129100 ENOG411DWE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os01g0333700 protein,Os01g0344900 protein Q5Z830,A0A0P0V259 Q5Z830_ORYSJ,A0A0P0V259_ORYSJ Os01g0333700 B1140D12.26 OJ1008_F01.2 OsJ_01593 OSNPB_010333700,Os01g0344900 OSNPB_010344900 ENOG411DWE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OsFBLD1 - F-box LRR and FBD domain containing protein expressed Os02g0160200 protein (cDNA clone:002-137-H06, full insert sequence) Q6H7U8 Q6H7U8_ORYSJ Os02g0160200 Os02g0160200 B1103G11.37 OJ9003_G05.2 OSNPB_020160200 ENOG411DWE4 Q9ZW70 Q9ZW70_ARATH Transmembrane protein (Uncharacterized protein At2g43250) 67862 Transmembrane protein (Uncharacterized protein At2g43250) integral component of membrane [GO:0016021] locus:2040986; AT2G43250 NA OSJNBa0076N16.11 protein (OSJNBa0084K20.13 protein) (Os04g0490700 protein) Q7X8P4 Q7X8P4_ORYSJ Os04g0490700 OsJ_15285 OSJNBa0076N16.11 OSJNBa0084K20.13 OSNPB_040490700 ENOG411DWE5 Q9SR00,A0A1I9LPC7 PP213_ARATH,A0A1I9LPC7_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic,Pentatricopeptide repeat (PPR-like) superfamily protein 67695,64383 Pentatricopeptide repeat-containing protein At3g04760, chloroplastic,Pentatricopeptide repeat (PPR-like) superfamily protein chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2084978; AT3G04760 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DWE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0185700 protein Q6ZLF7 Q6ZLF7_ORYSJ Os07g0185700 Os07g0185700 OJ1339_B08.7 OsJ_23367 OSNPB_070185700 ENOG411DWE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L-ascorbate peroxidase activity Probable L-ascorbate peroxidase 5, chloroplastic (EC 1.11.1.11) (OsAPx5),Probable L-ascorbate peroxidase 6, chloroplastic/mitochondrial (EC 1.11.1.11) (OsAPx6) P0C0L0,P0C0L1 APX5_ORYSJ,APX6_ORYSJ APX5 Os12g0178200 LOC_Os12g07830,APX6 Os12g0178100 LOC_Os12g07820 FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ENOG411DWE0 Q9LDF5,A0A1I9LST4 Q9LDF5_ARATH,A0A1I9LST4_ARATH 3-hydroxyacyl-CoA dehydrogenase family protein (3-hydroxybutyryl-CoA dehydrogenase-like protein) (Putative 3-hydroxybutyryl-CoA dehydrogenase),3-hydroxyacyl-CoA dehydrogenase family protein ARA:AT3G15290-MONOMER; R-ATH-77310;R-ATH-77346;R-ATH-77348;R-ATH-77350;R-ATH-77352; 31690,25781 3-hydroxyacyl-CoA dehydrogenase family protein (3-hydroxybutyryl-CoA dehydrogenase-like protein) (Putative 3-hydroxybutyryl-CoA dehydrogenase),3-hydroxyacyl-CoA dehydrogenase family protein peroxisome [GO:0005777]; 3-hydroxyacyl-CoA dehydrogenase activity [GO:0003857]; NAD+ binding [GO:0070403]; fatty acid metabolic process [GO:0006631],3-hydroxyacyl-CoA dehydrogenase activity [GO:0003857]; NAD+ binding [GO:0070403]; fatty acid metabolic process [GO:0006631] locus:2087120; AT3G15290 3-hydroxybutyryl-CoA Os01g0796400 protein (Putative S(+)-beta-hydroxybutyryl CoA dehydrogenase) (cDNA clone:J033125N02, full insert sequence),Os01g0796400 protein Q8S1G9,A0A0P0V977 Q8S1G9_ORYSJ,A0A0P0V977_ORYSJ P0699H05.27-1 Os01g0796400 OsJ_03749 OSNPB_010796400,Os01g0796400 OSNPB_010796400 ENOG411DWE1 SG1 Q9LS48 SG1_ARATH protein SLOW GREEN 1, chloroplastic FUNCTION: Required for the early stage of chloroplast development. May be involved in chloroplast protein biosynthesis and/or degradation. {ECO:0000269|PubMed:24420572}. 35631 protein SLOW GREEN 1, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; plastid [GO:0009536]; chloroplast organization [GO:0009658] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in newly formed green tissues. {ECO:0000269|PubMed:24420572}. locus:2095037; AT3G18420 Inherit from NOG: repeat protein NA NA NA NA NA NA NA ENOG411DWE2 PKSB,PKSA,LAP5 Q8LDM2,O23674,A0A1P8B585 PKSB_ARATH,PKSA_ARATH,A0A1P8B585_ARATH Type III polyketide synthase B (PKS-B) (EC 2.3.1.-) (Hydroxyalkyl alpha-pyrone synthase PKS-B) (Protein LESS ADHESIVE POLLEN 5),Type III polyketide synthase A (PKS-A) (EC 2.3.1.-) (Hydroxyalkyl alpha-pyrone synthase PKS-A) (Protein LESS ADHESIVE POLLEN 6),Chalcone and stilbene synthase family protein DISRUPTION PHENOTYPE: Pollen exine layer defects. Reduced accumulation of flavonoid precursors and flavonoids in developing anthers. Plants lacking both PKS-A and PKS-B are completely male sterile, with no apparent exine, thus leading to pollen grain collapse under vacuum. Altered pollen-stigma adhesion. {ECO:0000269|PubMed:20442277, ECO:0000269|PubMed:21193570}. Abnormal pollen exine layer-C. Douglas-2010 FUNCTION: Plant type III polyketide synthases (PKSs) that catalyzes the condensation of malonyl-CoA units with various CoA ester starter molecules to generate a diverse array of natural products including long-chain alkyl alpha-pyrones. Accepts up to C(20) chain-length fatty acyl CoAs as starter substrates, and carries out sequential condensations with malonyl-CoA to produce triketide and tetraketide alpha-pyrones, potential sporopollenin precursors (PubMed:19043200, PubMed:21193570). Favorite substrates for are midchain- and v-hydroxylated fatty acyl-CoAs (e.g. 12-hydroxyoctadecanoyl-CoA and 16-hydroxyhexadecanoyl-CoA). Required for pollen development and sporopollenin biosynthesis, the major constituent of exine in the outer pollen wall (PubMed:21193570, PubMed:20442277). In vitro, can use 4-coumaroyl-coenzyme A as substrate to produce bis-noryangonin and fatty acyl-coenzyme A as substrate to produce medium-chain alkyl pyrones. May play a role in both the synthesis of pollen fatty acids and phenolics found in exine (PubMed:20442277). {ECO:0000269|PubMed:19043200, ECO:0000269|PubMed:20442277, ECO:0000269|PubMed:21193570}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. {ECO:0000250|UniProtKB:Q9LKP7}. ARA:AT4G34850-MONOMER;MetaCyc:AT4G34850-MONOMER;,ARA:AT1G02050-MONOMER;MetaCyc:AT1G02050-MONOMER; 2.3.1.- 42982,43617,34924 Type III polyketide synthase B (PKS-B) (EC 2.3.1.-) (Hydroxyalkyl alpha-pyrone synthase PKS-B) (Protein LESS ADHESIVE POLLEN 5),Type III polyketide synthase A (PKS-A) (EC 2.3.1.-) (Hydroxyalkyl alpha-pyrone synthase PKS-A) (Protein LESS ADHESIVE POLLEN 6),Chalcone and stilbene synthase family protein endoplasmic reticulum [GO:0005783]; tetraketide alpha-pyrone synthase activity [GO:0090439]; flavonoid biosynthetic process [GO:0009813]; pollen exine formation [GO:0010584]; polyketide biosynthetic process [GO:0030639]; sporopollenin biosynthetic process [GO:0080110],transferase activity, transferring acyl groups [GO:0016746]; metabolic process [GO:0008152] DEVELOPMENTAL STAGE: Most abundant in the youngest flower buds, but levels decline as flowers mature. Specifically and transiently expressed in tapetal cells during microspore development in anthers (at protein level). {ECO:0000269|PubMed:20442277, ECO:0000269|PubMed:21193570}. TISSUE SPECIFICITY: Expressed in flowers and flower buds (at protein level) (PubMed:21193570, PubMed:20442277). Mostly confined to anther tapetal cells (PubMed:23632852). {ECO:0000269|PubMed:20442277, ECO:0000269|PubMed:21193570, ECO:0000269|PubMed:23632852}.,TISSUE SPECIFICITY: Expressed in flowers and flower buds (at protein level), and, at very low levels, in roots, seedlings, leaves and stems (PubMed:21193570, PubMed:20442277). Mostly confined to anther tapetal cells (PubMed:23632852). {ECO:0000269|PubMed:20442277, ECO:0000269|PubMed:21193570, ECO:0000269|PubMed:23632852}. locus:2116845;,locus:2205588; AT4G34850,AT1G02050 chalcone synthase Os07g0411300 protein (Putative chalcone synthase),Anther-specific protein YY2 (Chalcone and stilbene synthases, N-terminal domain containing protein, expressed) (Os10g0484800 protein) (cDNA clone:001-127-E05, full insert sequence) Q8H305,Q7X795 Q8H305_ORYSJ,Q7X795_ORYSJ P0710F09.124 Os07g0411300 OSNPB_070411300,LOC_Os10g34360 Os10g0484800 OsJ_31939 OSJNBa0029C15.7 OSNPB_100484800 ENOG411DWE3 PCMP-E73 Q9SJK9,A0A1P8AY85,A0A1P8AYD1 PP189_ARATH,A0A1P8AY85_ARATH,A0A1P8AYD1_ARATH Pentatricopeptide repeat-containing protein At2g36980, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein 69097,68175,52330 Pentatricopeptide repeat-containing protein At2g36980, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2057986; AT2G36980 Pentatricopeptide repeat-containing protein Os09g0520300 protein Q650U4 Q650U4_ORYSJ P0669G04.8 Os09g0520300 OSNPB_090520300 ENOG411EECD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E6SA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411EEC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitin recognition protein NA NA NA NA NA NA NA ENOG411EJXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Ribosomal protein NA NA NA NA NA NA NA ENOG411EJXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome C assembly protein NA NA NA NA NA NA NA ENOG411EJXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3054) NA NA NA NA NA NA NA ENOG411EJXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA polymerase III subunit Rpc31 NA NA NA NA NA NA NA ENOG411EJXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NA NA NA NA NA NA NA ENOG411EJXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor NA NA NA NA NA NA NA ENOG411EJX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Nucleolar protein 12 (25kDa) NA NA NA NA NA NA NA ENOG411EJX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5IU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP NA NA NA NA NA NA NA ENOG411E4R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os07g0674500 protein (cDNA clone:002-133-E04, full insert sequence) Q6ZDW7 Q6ZDW7_ORYSJ P0618H09.13 Os07g0674500 OSNPB_070674500 P0037D09.15 ENOG411E573 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein OSJNBa0064G10.24 protein (Os04g0678400 protein) Q7FAN8 Q7FAN8_ORYSJ OSJNBa0064G10.24 Os04g0678400 OSNPB_040678400 ENOG411E572 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50S ribosomal protein L22 50S ribosomal protein L22, chloroplastic,Os12g0488300 protein,Os07g0273150 protein (Fragment) P0C446,A0A0P0YAA5,A0A0P0X4M8 RK22_ORYSJ,A0A0P0YAA5_ORYSJ,A0A0P0X4M8_ORYSJ rpl22 Nip117,Os12g0488300 OSNPB_120488300,Os07g0273150 OSNPB_070273150 FUNCTION: This protein binds specifically to 23S rRNA. {ECO:0000250}.; FUNCTION: The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. {ECO:0000250}. ENOG411E571 GRXC1 Q8L8T2 GRXC1_ARATH Glutaredoxin-C1 (AtGrxC1) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 13611 Glutaredoxin-C1 (AtGrxC1) cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2166325; AT5G63030 Glutaredoxin NA NA NA NA NA NA NA ENOG411E570 ND1; ; ,nad1 P92558,Q1ZXW0,Q3EC42 NU1M_ARATH,Q1ZXW0_ARATH,Q3EC42_ARATH NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH dehydrogenase subunit 1),NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (Fragment),NADH dehydrogenase family protein FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated genes (At2g07785 and At2g07786) is not demonstrated. They are also probably not RNA edited and therefore differs in all the positions known to be edited. ARA:ATMG01120-MONOMER;MetaCyc:ATMG01120-MONOMER;,ARA:AT2G07785-MONOMER; 1.6.5.3 36030,35676,10611 NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH dehydrogenase subunit 1),NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (Fragment),NADH dehydrogenase family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; cellular respiration [GO:0045333],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; respiratory chain complex I [GO:0045271]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; photorespiration [GO:0009853],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial respiratory chain complex I [GO:0005747]; plasma membrane [GO:0005886]; oxidoreductase activity [GO:0016491]; cellular respiration [GO:0045333] locus:1009023498;locus:504954486;locus:504954595;,locus:1006230121; AT2G07785AT2G07786;ATMG00516;ATMG01120;ATMG01275;,AT2G07785 Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) Q8HCR7 Q8HCR7_ORYSJ nad1 ENOG411E577 MNB8.2 Q9LVV6 Q9LVV6_ARATH At5g52960 (Uncharacterized protein At5g52960/MNB8_2) (tRNA dimethylallyltransferase) 19163 At5g52960 (Uncharacterized protein At5g52960/MNB8_2) (tRNA dimethylallyltransferase) transferase activity [GO:0016740] locus:2168352; AT5G52960 Protein of unknown function (DUF3143) Os05g0569200 protein Q6AUN4 Q6AUN4_ORYSJ Os05g0569200 OJ1781_H11.24 OsJ_19595 OSJNBa0040E06.6 OSNPB_050569200 ENOG411E576 Q9FY84 PEN2_ARATH Probable gamma-secretase subunit PEN-2 FUNCTION: Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. {ECO:0000250}. 16489 Probable gamma-secretase subunit PEN-2 gamma-secretase complex [GO:0070765]; Golgi-associated vesicle [GO:0005798]; integral component of membrane [GO:0016021]; Notch signaling pathway [GO:0007219] locus:2184712; AT5G09310 Presenilin enhancer-2 subunit of gamma secretase Gamma-secretase subunit PEN2-like (Os01g0960000 protein) (cDNA clone:002-140-B04, full insert sequence) Q5JN39 Q5JN39_ORYSJ Os01g0960000 Os01g0960000 OSNPB_010960000 P0401G10.22 ENOG411E575 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0505500 protein (cDNA clone:J033045F02, full insert sequence) Q6K6L6 Q6K6L6_ORYSJ Os02g0505500 OsJ_06849 OSNPB_020505500 P0047E05.1 ENOG411E579 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9) Q6K846 IAA9_ORYSJ IAA9 Os02g0805100 LOC_Os02g56120 OJ1548_F12.17 OsJ_08776 OSJNBa0049O12.20 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E578 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0272000 protein (Fragment) Q0J314 Q0J314_ORYSJ Os09g0272000 Os09g0272000 OSNPB_090272000 ENOG411DUAT O82167,Q0WMZ7 O82167_ARATH,Q0WMZ7_ARATH At2g35260/T4C15.7 (CAAX protease self-immunity protein) (Expressed protein),At4g17840 (CAAX protease self-immunity protein) (Uncharacterized protein At4g17840) 41710,44910 At2g35260/T4C15.7 (CAAX protease self-immunity protein) (Expressed protein),At4g17840 (CAAX protease self-immunity protein) (Uncharacterized protein At4g17840) integral component of membrane [GO:0016021]; peptidase activity [GO:0008233] locus:2063484;,locus:2141000; AT2G35260,AT4G17840 NA Os03g0100030 protein A3AD50 A3AD50_ORYSJ Os03g0100030 OsJ_09043 OSNPB_030100030 ENOG411DUAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Magnesium transporter that may mediate the influx of magnesium (By similarity) Magnesium transporter MRS2-E Q8S1N1 MRS2E_ORYSJ MRS2-E Os01g0869200 LOC_Os01g64890 OsJ_04219 P0677H08.30 FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}. ENOG411E57S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor Os02g0635800 protein (TCP family transcription factor-like) (cDNA clone:006-311-F05, full insert sequence) Q6H878 Q6H878_ORYSJ Os02g0635800 OJ1581_H09.2 OSNPB_020635800 ENOG411E57V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E57T NFYB4 O04027 NFYB4_ARATH Nuclear transcription factor Y subunit B-4 (AtNF-YB-4) (Transcriptional activator HAP3D) FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. 15741 Nuclear transcription factor Y subunit B-4 (AtNF-YB-4) (Transcriptional activator HAP3D) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}. locus:2036064; AT1G09030 Nuclear transcription factor Y subunit NA NA NA NA NA NA NA ENOG411E57A O22868 O22868_ARATH At2g43540 (Expressed protein) (Transmembrane protein) 17799 At2g43540 (Expressed protein) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2058162; AT2G43540 NA Os04g0495300 protein Q0JC31 Q0JC31_ORYSJ Os04g0495300 Os04g0495300 OSNPB_040495300 ENOG411DUAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-like DNA-binding domain containing protein, expressed (Os11g0207600 protein) Q2R933 Q2R933_ORYSJ Os11g0207600 LOC_Os11g10130 Os11g0207600 OSNPB_110207600 ENOG411E57K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0344200 protein (cDNA clone:001-038-A07, full insert sequence) (cDNA clone:006-305-F02, full insert sequence) Q5W6M4 Q5W6M4_ORYSJ Os05g0344200 OSNPB_050344200 P0015F11.13 ENOG411E57H Q9LPZ0 Q9LPZ0_ARATH At1g11440 (Putative serine/threonine protein kinase) (T23J18.11) 41810 At1g11440 (Putative serine/threonine protein kinase) (T23J18.11) protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777] locus:2200051; AT1G11440 NA NA NA NA NA NA NA NA ENOG411E57N Q9SD88 ASTER_ARATH Protein Asterix 11744 Protein Asterix integral component of membrane [GO:0016021] locus:2142843; AT5G07960 UPF0139 membrane protein Os03g0756800 protein (UPF0139 protein, putative, expressed) (cDNA clone:J013095D02, full insert sequence) Q10CL8 Q10CL8_ORYSJ LOC_Os03g54980 Os03g0756800 OsJ_12645 OSNPB_030756800 ENOG411DUAK Q9LYV6,A0A1P8BC46 GEML5_ARATH,A0A1P8BC46_ARATH GEM-like protein 5,GRAM domain family protein 30071,23614 GEM-like protein 5,GRAM domain family protein embryo development ending in seed dormancy [GO:0009793]; maintenance of seed dormancy by absisic acid [GO:0098755]; regulation of seed germination [GO:0010029]; seed germination [GO:0009845] locus:2183901; AT5G13200 GEM-like protein Os12g0478100 protein (Os12g0478200 protein) (Fragment) C7JA48 C7JA48_ORYSJ Os12g0478200 Os12g0478100 OSNPB_120478200 ENOG411EM79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain Monooxygenase-like (Os06g0597600 protein) Q69VD3 Q69VD3_ORYSJ Os06g0597600 Os06g0597600 OsJ_21870 OSNPB_060597600 P0417D05.33 P0642B07.1 ENOG411EM71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain Os02g0559500 protein (Os02g0559900 protein) (Os02g0560300 protein) (Os02g0560700 protein) (Os02g0561100 protein) A0A0P0VKG8 A0A0P0VKG8_ORYSJ Os02g0559500 Os02g0559900 Os02g0560300 Os02g0560700 Os02g0561100 OSNPB_020559500 OSNPB_020559900 OSNPB_020560300 OSNPB_020560700 OSNPB_020561100 ENOG411EM77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16S rRNA processing protein Os05g0566300 protein (cDNA clone:J013060F08, full insert sequence) Q688X2 Q688X2_ORYSJ Os05g0566300 OJ1781_H11.4 OSNPB_050566300 ENOG411EM7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DDT domain Os07g0661550 protein,Os07g0661500 protein A0A0P0XA66,A0A0N7KP03 A0A0P0XA66_ORYSJ,A0A0N7KP03_ORYSJ Os07g0661550 OSNPB_070661550,Os07g0661500 OSNPB_070661500 ENOG411EM7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family NA NA NA NA NA NA NA ENOG411EM7I ICME,ICMEL2,ICMEL1,ICME-LIKE2 Q94AS5,Q1PET6,Q8VYP9,A0A1I9LQ86 ICME_ARATH,ICML2_ARATH,ICML1_ARATH,A0A1I9LQ86_ARATH Isoprenylcysteine alpha-carbonyl methylesterase ICME (EC 3.1.1.n2) (Isoprenylcysteine methylesterase) (Prenylcysteine methylesterase) (AtPCME),Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 (EC 3.1.1.n2) (Isoprenylcysteine methylesterase-like protein 2),Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 (EC 3.1.1.n2) (Isoprenylcysteine methylesterase-like protein 1),Carboxylic ester hydrolase (EC 3.1.1.-) Sensitive to ABA; Resistant to salt and osmotic stress-W. Ma-2010 FUNCTION: Catalyzes the demethylation of isoprenylcysteine methylesters. In vitro, is specific for N-acetyl-S-farnesyl-L-cysteine methyl ester (AFCme) and has low activity toward N-acetyl-S-geranyl-L-cysteine methyl ester (AGCme). Acts as a positive regulator of ABA signaling. May be involved in the demethylation and inactivation of isoprenylated negative regulators of abscisic acid (ABA) signaling. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins. {ECO:0000269|PubMed:16870359, ECO:0000269|PubMed:18957507, ECO:0000269|PubMed:20868530}.,FUNCTION: Catalyzes the demethylation of isoprenylcysteine methylesters. May act as a negative regulator of ABA signaling. {ECO:0000269|PubMed:20868530}.,FUNCTION: Catalyzes the demethylation of isoprenylcysteine methylesters. May be involved in the regulation of ABA signaling (By similarity). {ECO:0000250}. MISCELLANEOUS: plants overexpressing ICME exhibit enhanced ABA inhibition of seed germination and ABA induction of stomatal closure. Plant silencing ICME exhibit a reduced ABA sensitivity in seed germination assays.,MISCELLANEOUS: Plants silencing ICMEL2 show enhanced ABA inhibition of seed germination. ARA:AT5G15860-MONOMER;MetaCyc:AT5G15860-MONOMER;,ARA:GQT-2775-MONOMER;,ARA:GQT-1404-MONOMER; 3.1.1.n2,3.1.1.- 47582,47010,52719,44468 Isoprenylcysteine alpha-carbonyl methylesterase ICME (EC 3.1.1.n2) (Isoprenylcysteine methylesterase) (Prenylcysteine methylesterase) (AtPCME),Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 (EC 3.1.1.n2) (Isoprenylcysteine methylesterase-like protein 2),Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 (EC 3.1.1.n2) (Isoprenylcysteine methylesterase-like protein 1),Carboxylic ester hydrolase (EC 3.1.1.-) endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; prenylcysteine methylesterase activity [GO:0010296]; catabolic process [GO:0009056]; response to abscisic acid [GO:0009737],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; prenylcysteine methylesterase activity [GO:0010296]; serine-type peptidase activity [GO:0008236]; catabolic process [GO:0009056]; response to abscisic acid [GO:0009737],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; prenylcysteine methylesterase activity [GO:0010296]; catabolic process [GO:0009056]; response to abscisic acid [GO:0009737],integral component of membrane [GO:0016021]; serine-type peptidase activity [GO:0008236] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:20868530}.,TISSUE SPECIFICITY: Expressed at low levels in flowers and siliques. {ECO:0000269|PubMed:20868530}. locus:2143236;,locus:2076979;,locus:2011415; AT5G15860,AT3G02410,AT1G26120 isoprenylcysteine alpha-carbonyl methylesterase Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 (EC 3.1.1.n2) (Isoprenylcysteine methylesterase-like protein 1),Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 (EC 3.1.1.n2) (Isoprenylcysteine methylesterase-like protein 2),Os06g0708100 protein Q5Z9I2,Q5VNW5,A0A0P0X0V6 IMCL1_ORYSJ,IMCL2_ORYSJ,A0A0P0X0V6_ORYSJ IMCEL1 Os06g0708100 LOC_Os06g49440 OsJ_22610 P0621D05.41-1 P0655A07.1-1,IMCEL2 Os01g0642000 P0039G05.24 P0510C12.9,Os06g0708100 OSNPB_060708100 FUNCTION: Catalyzes the demethylation of isoprenylcysteine methylesters. {ECO:0000250}. ENOG411EM7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM7M F4K0Y2 F4K0Y2_ARATH PHD-finger and DNA binding domain-containing protein 179983 PHD-finger and DNA binding domain-containing protein DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:505006608; AT5G12400 DDT domain NA NA NA NA NA NA NA ENOG411EM7C BT4 Q9FJX5 BT4_ARATH BTB/POZ and TAZ domain-containing protein 4 (BTB and TAZ domain protein 4) same as smb-3 single mutant,Reduced seed set and shortened siliques. Phenotype is identical to bt2-3/+;bt3-1/+,Embryo lethal - not recovered. FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 42461 BTB/POZ and TAZ domain-containing protein 4 (BTB and TAZ domain protein 4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; vacuolar membrane [GO:0005774]; calmodulin binding [GO:0005516]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; ubiquitin protein ligase binding [GO:0031625]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to gibberellin [GO:0009739]; response to hydrogen peroxide [GO:0042542]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Preferentially expressed in leaves, stems and flowers. {ECO:0000269|PubMed:15316289, ECO:0000269|PubMed:19054356}. locus:2158586; AT5G67480 BTB POZ and TAZ domain-containing protein Os01g0893400 protein (Putative BTB and TAZ domain protein) (cDNA clone:J023077N08, full insert sequence) Q5JLW2 Q5JLW2_ORYSJ Os01g0893400 B1078G07.32 OsJ_04382 OSNPB_010893400 ENOG411EM7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Bric-a-Brac Tramtrack Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains expressed NA NA NA NA NA NA NA ENOG411EM7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AT_hook NA NA NA NA NA NA NA ENOG411EM7G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone acetylation protein NA NA NA NA NA NA NA ENOG411EM7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone acetylation protein Probable histone acetyltransferase HAC-like 3 (EC 2.3.1.48) Q9XHY7 HACL3_ORYSJ Os01g0246100 LOC_Os01g14370 OSJNBa0004G10.16 OSJNBa0049B20.5 FUNCTION: Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation. {ECO:0000250|UniProtKB:Q9C5X9}. ENOG411EM7D HAC12,HAC1 Q9FWQ5,Q9C5X9,Q8LFM6,A0A1P8ARV8,A0A1P8ARV7,F4I4I8,F4IDH2,A0A1P8ATA1,A0A1P8ARU4,F4I4I6 HAC12_ARATH,HAC1_ARATH,Q8LFM6_ARATH,A0A1P8ARV8_ARATH,A0A1P8ARV7_ARATH,F4I4I8_ARATH,F4IDH2_ARATH,A0A1P8ATA1_ARATH,A0A1P8ARU4_ARATH,F4I4I6_ARATH Histone acetyltransferase HAC12 (EC 2.3.1.48),Histone acetyltransferase HAC1 (EC 2.3.1.48),At1g16705 (p300/CBP acetyltransferase-related protein-like protein),Histone acetyltransferase of the CBP family 12,Histone acetyltransferase of the CBP family 1,p300/CBP acetyltransferase-related protein-like protein Late flowering in long day (16 h light/8 h dark) as well as short day (8 h light/16 h dark). Short primary root; Reduced fertility; Late flowering-X. Cao-2007 FUNCTION: Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation. {ECO:0000250|UniProtKB:Q9C5X9}.,FUNCTION: Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation. {ECO:0000269|PubMed:11160878}. R-ATH-3371568;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210; 2.3.1.48 190272,190045,14475,187425,183631,187091,195169,187333,163539,14603 Histone acetyltransferase HAC12 (EC 2.3.1.48),Histone acetyltransferase HAC1 (EC 2.3.1.48),At1g16705 (p300/CBP acetyltransferase-related protein-like protein),Histone acetyltransferase of the CBP family 12,Histone acetyltransferase of the CBP family 1,p300/CBP acetyltransferase-related protein-like protein nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; zinc ion binding [GO:0008270]; flower development [GO:0009908]; protein acetylation [GO:0006473]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],transferase activity [GO:0016740],nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; zinc ion binding [GO:0008270]; DNA mediated transformation [GO:0009294]; flower development [GO:0009908]; photoperiodism, flowering [GO:0048573]; protein acetylation [GO:0006473]; regulation of transcription from RNA polymerase II promoter [GO:0006357] DEVELOPMENTAL STAGE: Expressed in young seedlings. {ECO:0000269|PubMed:11160878}. TISSUE SPECIFICITY: Rosette leaves, stems and flowers. {ECO:0000269|PubMed:11160878}. locus:2015676;,locus:2207295;,locus:505006124; AT1G16710,AT1G79000,AT1G16705 histone acetyltransferase Probable histone acetyltransferase HAC-like 2 (EC 2.3.1.48),Probable histone acetyltransferase HAC-like 1 (EC 2.3.1.48),Os02g0137500 protein (Fragment),Os02g0137450 protein Q5Z8V7,Q6YXY2,A0A0N7KEN1,A0A0P0VEH1 HACL2_ORYSJ,HACL1_ORYSJ,A0A0N7KEN1_ORYSJ,A0A0P0VEH1_ORYSJ Os06g0704800 LOC_Os06g49130 P0018H04.4,Os02g0137500 LOC_Os02g04490 OSJNBa0026E05.8 OSJNBa0081C13.32,Os02g0137500 OSNPB_020137500,Os02g0137450 OSNPB_020137450 FUNCTION: Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation. {ECO:0000250|UniProtKB:Q9C5X9}. ENOG411EM7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM7X DHQS Q8VYV7 DHQS_ARATH 3-dehydroquinate synthase, chloroplastic (EC 4.2.3.4) FUNCTION: Catalyzes the second step in the shikimate pathway. {ECO:0000250}. PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7. ARA:AT5G66120-MONOMER; 4.2.3.4 48064 3-dehydroquinate synthase, chloroplastic (EC 4.2.3.4) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; 3-dehydroquinate synthase activity [GO:0003856]; metal ion binding [GO:0046872]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423] locus:2156942; AT5G66120 3-dehydroquinate synthase Os09g0539100 protein (Putative dehydroquinate synthase) Q651F0 Q651F0_ORYSJ Os09g0539100 Os09g0539100 B1274F11.6 OsJ_30163 OSNPB_090539100 ENOG411EM7S Q8LBF1,A0A1P8AV52,F4HS21 Q8LBF1_ARATH,A0A1P8AV52_ARATH,F4HS21_ARATH At1g18470 (Transmembrane Fragile-X-F-associated protein),Transmembrane Fragile-X-F-associated protein 53001,49609,52910 At1g18470 (Transmembrane Fragile-X-F-associated protein),Transmembrane Fragile-X-F-associated protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966],integral component of membrane [GO:0016021],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:2014089;,locus:2031471; AT1G18470,AT1G73950 Transmembrane Fragile-X-F protein NA NA NA NA NA NA NA ENOG411EM7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411EM7W F27K7.11 P05466,Q9FVP6,A0A1P8B1E5,F4I035 AROA_ARATH,Q9FVP6_ARATH,A0A1P8B1E5_ARATH,F4I035_ARATH 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase),3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19),RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta FUNCTION: Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. {ECO:0000250|UniProtKB:P0A6D3}. MISCELLANEOUS: This enzyme is the target of the potent, broad-spectrum herbicide, glyphosate [n-(phosphonomethyl)glycine]. Overproduction of EPSP leads to glyphosate tolerance. PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.,PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7. {ECO:0000256|RuleBase:RU004164}. ARA:AT2G45300-MONOMER;,ARA:AT1G48860-MONOMER; 2.5.1.19 55734,55831,55385,52407 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase),3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19),RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 3-phosphoshikimate 1-carboxyvinyltransferase activity [GO:0003866]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423],chloroplast [GO:0009507]; 3-phosphoshikimate 1-carboxyvinyltransferase activity [GO:0003866]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423],3-phosphoshikimate 1-carboxyvinyltransferase activity [GO:0003866]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423],3-phosphoshikimate 1-carboxyvinyltransferase activity [GO:0003866]; aromatic amino acid family biosynthetic process [GO:0009073] locus:2050812;,locus:2028544; AT2G45300,AT1G48860 3-phosphoshikimate 1-carboxyvinyltransferase 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (Fragment) A0A0N7KLH2 A0A0N7KLH2_ORYSJ Os06g0133900 OSNPB_060133900 ENOG411EM7V MRG7.10 Q9FK56 Q9FK56_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At5g18140) 37618 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At5g18140) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2172374; AT5G18140 DnaJ domain NA NA NA NA NA NA NA ENOG411EM7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pollen allergen Os06g0662800 protein (Putative group 3 pollen allergen),Os06g0662600 protein (Putative group 3 pollen allergen),OSJNBa0050F15.10 protein (Os04g0317800 protein) (cDNA clone:002-175-G10, full insert sequence),Os06g0663300 protein (Putative group 3 pollen allergen),Os06g0662700 protein (Fragment),Os06g0655200 protein (Putative group 3 pollen allergen) (cDNA clone:J023066C23, full insert sequence),OSJNBa0063G07.3 protein (OSJNBa0082E08.9 protein) (Os04g0329300 protein),OSJNBa0050F15.7 protein (Os04g0317400 protein),Os06g0662500 protein (Os06g0662850 protein) (Pollen allergen) (Putative group 3 pollen allergen),OSJNBa0063G07.2 protein (OSJNBa0082E08.8 protein) (Os04g0329200 protein),Os06g0662900 protein (Pollen allergen) (Putative group 3 pollen allergen),OSJNBa0050F15.8 protein (Os04g0317500 protein) (cDNA clone:J023035O06, full insert sequence),Os04g0328900 protein (Fragment) Q654A7,Q654A8,Q7XVQ4,Q653Z7,Q0DAC4,Q67W98,Q7XLW2,Q7XVQ2,Q654A6,Q7X7H1,Q654A4,Q7XVQ3,A0A0P0W8M7 Q654A7_ORYSJ,Q654A8_ORYSJ,Q7XVQ4_ORYSJ,Q653Z7_ORYSJ,Q0DAC4_ORYSJ,Q67W98_ORYSJ,Q7XLW2_ORYSJ,Q7XVQ2_ORYSJ,Q654A6_ORYSJ,Q7X7H1_ORYSJ,Q654A4_ORYSJ,Q7XVQ3_ORYSJ,A0A0P0W8M7_ORYSJ OSJNBb0065C04.21 Os06g0662800 OSNPB_060662800,Os06g0662600 OsJ_22258 OSJNBb0065C04.19 OSNPB_060662600,Os04g0317800 OsJ_14280 OSJNBa0050F15.10 OSNPB_040317800,Os06g0663300 OsJ_22265 OSJNBb0065C04.37 OSNPB_060663300,Os06g0662700 Os06g0662700 OSNPB_060662700,Os06g0655200 OsJ_22208 OSNPB_060655200 P0460H04.4 P0709F06.25,Os04g0329300 OSJNBa0063G07.3 OSJNBa0082E08.9 OSNPB_040329300,Os04g0317400 OsJ_14274 OsJ_14276 OSJNBa0050F15.7 OSNPB_040317400,Os06g0662500 Os06g0662850 Os06g0662500 OsJ_22257 OsJ_22262 OSJNBb0065C04.17 OSJNBb0065C04.22 OSNPB_060662500 OSNPB_060662850,Os04g0329200 Os04g0329200 OsJ_13636 OsJ_14277 OSJNBa0063G07.2 OSJNBa0082E08.8 OSNPB_040329200,Os06g0662900 OsJ_22263 OSJNBb0065C04.24 OSNPB_060662900,Os04g0317500 OsJ_14275 OSJNBa0050F15.8 OSNPB_040317500,Os04g0328900 OSNPB_040328900 ENOG411EM7T ATJ6 Q9FL54 DNAJ6_ARATH Chaperone protein dnaJ 6 (AtDjC6) (AtJ6) FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 32574 Chaperone protein dnaJ 6 (AtDjC6) (AtJ6) nucleus [GO:0005634] TISSUE SPECIFICITY: Highly expressed in leaves, flowers and siliques, and to lower extent in roots. {ECO:0000269|Ref.1}. locus:2169449; AT5G06910 DnaJ domain Os02g0195800 protein (Putative DnaJ homolog, subfamily C, member 9) Q6H7N3 Q6H7N3_ORYSJ Os02g0195800 Os02g0195800 OJ1225_F07.17 OJ1524_D08.2 OsJ_05748 OSNPB_020195800 ENOG411DRC7 Q84WM9,Q9SCX3 EF1B1_ARATH,EF1B2_ARATH Elongation factor 1-beta 1 (EF-1-beta 1) (Elongation factor 1-beta' 1) (EF-1-beta' 1) (Elongation factor 1B-alpha 1) (eEF-1B alpha 1),Elongation factor 1-beta 2 (EF-1-beta 2) (Elongation factor 1-beta' 2) (EF-1-beta' 2) (Elongation factor 1B-alpha 2) (eEF-1B alpha 2) FUNCTION: EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP. {ECO:0000269|PubMed:10618495}. 24789,24201 Elongation factor 1-beta 1 (EF-1-beta 1) (Elongation factor 1-beta' 1) (EF-1-beta' 1) (Elongation factor 1B-alpha 1) (eEF-1B alpha 1),Elongation factor 1-beta 2 (EF-1-beta 2) (Elongation factor 1-beta' 2) (EF-1-beta' 2) (Elongation factor 1B-alpha 2) (eEF-1B alpha 2) eukaryotic translation elongation factor 1 complex [GO:0005853]; plasma membrane [GO:0005886]; translation elongation factor activity [GO:0003746],apoplast [GO:0048046]; cytosol [GO:0005829]; eukaryotic translation elongation factor 1 complex [GO:0005853]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; translation elongation factor activity [GO:0003746]; defense response to bacterium [GO:0042742] TISSUE SPECIFICITY: Pollen (at protein level). {ECO:0000269|PubMed:16242667}. locus:2177038;,locus:2180806; AT5G12110,AT5G19510 Elongation factor Elongation factor 1-beta (EF-1-beta) (Elongation factor 1-beta') (EF-1-beta') (Elongation factor 1B-alpha 2) (eEF-1B alpha 2) P29545 EF1B_ORYSJ Os07g0662500 LOC_Os07g46750 P0453E03.116 FUNCTION: EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP. ENOG411DRC6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0120400 protein,Os10g0158700 protein (Fragment),Os07g0122900 protein,Os07g0120200 protein,F-box domain containing protein, expressed (Os10g0138600 protein),Os01g0557400 protein,Os07g0123000 protein (cDNA clone:J023071O06, full insert sequence),Os01g0199800 protein,Os06g0248300 protein (Fragment),Os07g0122800 protein Q7XIE8,Q0IYV3,Q0D8W5,Q8LHX9,Q8VWH8,Q5JLK5,Q6Z4S1,A0A0P0UZA8,A0A0N7KLV1,A0A0P0X272 Q7XIE8_ORYSJ,Q0IYV3_ORYSJ,Q0D8W5_ORYSJ,Q8LHX9_ORYSJ,Q8VWH8_ORYSJ,Q5JLK5_ORYSJ,Q6Z4S1_ORYSJ,A0A0P0UZA8_ORYSJ,A0A0N7KLV1_ORYSJ,A0A0P0X272_ORYSJ P0022B05.125 Os07g0120400 OSNPB_070120400,Os10g0158700 OSNPB_100158700,Os07g0122900 Os07g0122900 OSNPB_070122900,P0022B05.123 Os07g0120200 OsJ_22911 OSNPB_070120200,OSJNAa0087H07.9 LOC_Os10g04900 Os10g0138600 OsJ_30668 OSJNBa0029P06.3 OSNPB_100138600,Os01g0557400 Os01g0557400 B1144D11.12 OJ1014_G12.38 OsJ_02213 OSNPB_010557400,Os07g0123000 OSJNBa0057M23.130 OSNPB_070123000,Os01g0199800 OSNPB_010199800,Os06g0248300 OSNPB_060248300,Os07g0122800 OSNPB_070122800 ENOG411DRC5 GT17 Q9CA34 GT17_ARATH Probable xyloglucan galactosyltransferase GT17 (EC 2.4.1.-) (Glycosyltransferase 17) (AtGT17) FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 52905 Probable xyloglucan galactosyltransferase GT17 (EC 2.4.1.-) (Glycosyltransferase 17) (AtGT17) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Expressed in roots and hypocotyls. {ECO:0000269|PubMed:15020758}. locus:2201297; AT1G68470 exostosin family NA NA NA NA NA NA NA ENOG411DRC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os05g0534000 protein (Fragment) A0A0P0WQF2 A0A0P0WQF2_ORYSJ Os05g0534000 OSNPB_050534000 ENOG411DRC3 RABC1 O23657 RABC1_ARATH Ras-related protein RABC1 (AtRABC1) (Ras-related protein Rab18) (AtRab18) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-6798695;R-ATH-6811436;R-ATH-8876198; 23531 Ras-related protein RABC1 (AtRABC1) (Ras-related protein Rab18) (AtRab18) Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031] locus:2029167; AT1G43890 ras-related protein NA NA NA NA NA NA NA ENOG411DRC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Mahogunin, ring finger 1-like protein (Os01g0374900 protein) Q94E82 Q94E82_ORYSJ Os01g0374900 Os01g0374900 B1045D11.34 OSNPB_010374900 ENOG411DRC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caleosin related protein Os03g0222600 protein (cDNA, clone: J100068E06, full insert sequence) B7FAF1 B7FAF1_ORYSJ Os03g0222600 OSNPB_030222600 ENOG411DRC0 Q66GI5 Q66GI5_ARATH At1g12570 (Glucose-methanol-choline (GMC) oxidoreductase family protein) ARA:AT1G12570-MONOMER; R-ATH-6798163; 62000 At1g12570 (Glucose-methanol-choline (GMC) oxidoreductase family protein) flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2034705; AT1G12570 glucose-methanol-choline (GMC) oxidoreductase family protein OSJNBa0019K04.7 protein (Os04g0573100 protein),Os02g0678300 protein Q7XTZ0,A0A0P0VMX7 Q7XTZ0_ORYSJ,A0A0P0VMX7_ORYSJ Os04g0573100 Os04g0573100 OsJ_15848 OSJNBa0019K04.7 OSNPB_040573100,Os02g0678300 OSNPB_020678300 ENOG411DRC9 ATS1 Q43307 PLSB_ARATH Glycerol-3-phosphate acyltransferase, chloroplastic (GPAT) (EC 2.3.1.15) altered fatty acid composition (strongly reduced C16 content) 25% reduction of phosphatidylglycerol content no obvious growth defect. Strong knockdown: Rosette lethal; Weak knockdown: Dwarf; Reduced fertility-C. Benning-2006 FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. This is an oleate-selective acyltransferase. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 1/3. MetaCyc:AT1G32200-MONOMER; 2.3.1.15 50421 Glycerol-3-phosphate acyltransferase, chloroplastic (GPAT) (EC 2.3.1.15) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; glycerol-3-phosphate O-acyltransferase activity [GO:0004366]; sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity [GO:0102420]; CDP-diacylglycerol biosynthetic process [GO:0016024]; phosphatidylglycerol biosynthetic process [GO:0006655] locus:2031755; AT1G32200 glycerol-3-phosphate acyltransferase Glycerol-3-phosphate acyltransferase, chloroplastic (GPAT) (EC 2.3.1.15) Q8W3G2 Q8W3G2_ORYSJ OSJNBa0035H01.8 LOC_Os10g42720 Os10g0577900 OSNPB_100577900 FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. {ECO:0000256|PIRNR:PIRNR000431}. ENOG411DRC8 POT4 Q9LD18 POT4_ARATH Potassium transporter 4 (AtKT4) (AtKUP3) (AtPOT4) FUNCTION: High-affinity potassium transporter. {ECO:0000269|PubMed:9477571}. 87411 Potassium transporter 4 (AtKT4) (AtKUP3) (AtPOT4) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; potassium ion transmembrane transporter activity [GO:0015079]; cell tip growth [GO:0009932] TISSUE SPECIFICITY: Detected at very low levels in roots, stems, leaves and flowers of mature plants and strongly expressed in the roots of potassium-starved plants. {ECO:0000269|PubMed:9477571}. locus:2078688; AT3G02050 potassium transporter Potassium transporter 7 (OsHAK7),Probable potassium transporter 2 (OsHAK2),Potassium transporter (Fragment),Os07g0669650 protein (Fragment) Q8H3P9,Q942X8,A0A0P0VCL9,A0A0P0XA43,A0A0P0XAT5 HAK7_ORYSJ,HAK2_ORYSJ,A0A0P0VCL9_ORYSJ,A0A0P0XA43_ORYSJ,A0A0P0XAT5_ORYSJ HAK7 Os07g0669700 LOC_Os07g47350 P0625E02.129,HAK2 Os01g0935500 LOC_Os01g70940 OsJ_04680 P0492G09.24-1 P0492G09.24-2,Os01g0935500 OSNPB_010935500,Os07g0669700 OSNPB_070669700,Os07g0669650 OSNPB_070669650 FUNCTION: High-affinity potassium transporter. {ECO:0000269|PubMed:12376644}.,FUNCTION: High-affinity potassium transporter. {ECO:0000250}.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. ENOG411DRCW LOI1 Q0WSH6 PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850 (Protein LOVASTATIN INSENSITIVE 1) loi1-1 mutants are less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis than wild type plants. Lovastatin (an inhibitor of HMG CoA reductase and the MVA pathway) normally inhibits root growth alters root tip morphology halts lateral root development causes cotyledon contraction and arrests true leaf development. But all of these phenotypes are less prominent in loi1-1 mutants treated with lovastatin. Sterol levels are reduced less in loi1-1 mutants than in wild-type plants following treatment with lovastatin. HMG1 and HMG2 transcript levels are not altered in loi1-1 mutants however there is increased HMG CoA reductase activity in loi1-1 mutants compared to wild type when the plants are treated with lovastatin. Clomazone (an inhibitor of DXS and the MEP pathway) normally causes albinoism and defects in thylakoid development in wild type plants but loi1-1 mutants treated with the same concentration of clomazone can develop green leaves and normal chloroplasts. The transcript and protein levels for DXS are the same for wild-type and loi1-1 mutants. Slow growth; Resistant to lovastatin (inhibitor of isoprenoid biosynthesis)-M. Takenaka-2009 FUNCTION: Acts as a regulatory factor of isoprenoid biosynthesis. Could bind RNA. {ECO:0000269|PubMed:17213228}. 75889 Pentatricopeptide repeat-containing protein At4g14850 (Protein LOVASTATIN INSENSITIVE 1) mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; nucleotide binding [GO:0000166]; poly(G) binding [GO:0034046]; zinc ion binding [GO:0008270]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287]; regulation of catalytic activity [GO:0050790]; RNA modification [GO:0009451]; root development [GO:0048364]; sterol metabolic process [GO:0016125] locus:2130389; AT4G14850 Pentatricopeptide repeat-containing protein Os11g0583200 protein (PPR986-12, putative, expressed) Q2R217 Q2R217_ORYSJ Os11g0583200 LOC_Os11g37330 OSNPB_110583200 ENOG411DRCV HMGCL O81027,A0A1P8B070,F4IVK2 HMGCL_ARATH,A0A1P8B070_ARATH,F4IVK2_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial (HL) (HMG-CoA lyase) (EC 4.1.3.4) (3-hydroxy-3-methylglutarate-CoA lyase),Aldolase superfamily protein hml1-1 seeds have much higher levels of free branched-chain amino acids Ile Leu and Val. hml1-1 seeds also have higher Arg Asp Gly His Ser Trp and Tyr.,hml1-2 seeds have much higher levels of free branched-chain amino acids Ile Leu and Val. hml1-2 seeds also have higher Arg Asp Gly His Ser Trp and Tyr. FUNCTION: Involved in the catabolism of branched amino acids such as leucine. {ECO:0000305}. PATHWAY: Metabolic intermediate metabolism; (S)-3-hydroxy-3-methylglutaryl-CoA degradation; acetoacetate from (S)-3-hydroxy-3-methylglutaryl-CoA: step 1/1. ARA:AT2G26800-MONOMER; R-ATH-77111; 4.1.3.4 50577,41392,39114 Hydroxymethylglutaryl-CoA lyase, mitochondrial (HL) (HMG-CoA lyase) (EC 4.1.3.4) (3-hydroxy-3-methylglutarate-CoA lyase),Aldolase superfamily protein mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; hydroxymethylglutaryl-CoA lyase activity [GO:0004419]; metal ion binding [GO:0046872],catalytic activity [GO:0003824] locus:2039548; AT2G26800 Hydroxymethylglutaryl-CoA lyase Hydroxymethylglutaryl-CoA lyase, mitochondrial, putative, expressed (Os11g0137200 protein),Os01g0269000 protein,Os12g0134000 protein (Fragment) Q2RAU5,Q0JNR8,A0A0P0Y6Z0 Q2RAU5_ORYSJ,Q0JNR8_ORYSJ,A0A0P0Y6Z0_ORYSJ Os11g0137200 LOC_Os11g04210 OsJ_32880 OSNPB_110137200,Os01g0269000 Os01g0269000 OsJ_01235 OSNPB_010269000,Os12g0134000 OSNPB_120134000 ENOG411DRCU SPL2 Q9S840 SPL2_ARATH Squamosa promoter-binding-like protein 2 Wider lamina in the third cauline leaf than the respective single mutants. Increased number of trichomes on sepals than the respective single mutants.,Cauline leaves and sepal trichomes show morphological defects.Specifically leaf lamina is wider than WT in the third cauline leaf. These phenotypes indicate a delayed vegetative - to reproductive phase change.,Wider lamina in the third cauline leaf than the respective single mutants. Wide cauline leaves; Increased trichome density on sepals-M. Ohme-Takagi-2009 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. 46860 Squamosa promoter-binding-like protein 2 nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; anther development [GO:0048653]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. locus:2169248; AT5G43270 Squamosa promoter-binding-like protein Squamosa promoter-binding-like protein 3,Os02g0139400 protein A3A2Z8,A0A0P0VEG1 SPL3_ORYSJ,A0A0P0VEG1_ORYSJ SPL3 Os02g0139400 LOC_Os02g04680 OJ1679_B08.6 OsJ_005170 OSJNBa0026E05.40,Os02g0139400 OSNPB_020139400 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411DRCT P0C895,Q0WNN7 Y2010_ARATH,PP176_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g30105,Pentatricopeptide repeat-containing protein At2g30100, chloroplastic R-ATH-6803207; 41338,57555 LRR repeats and ubiquitin-like domain-containing protein At2g30105,Pentatricopeptide repeat-containing protein At2g30100, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2060864; AT2G30105,AT2G30100 LRR repeats and ubiquitin-like domain-containing protein Plant intracellular Ras-group-related LRR protein 8 (Intracellular Ras-group-related LRR protein 8) (OsIRL8),Os10g0456200 protein Q7XDQ7,A0A0P0XUU7 PIRL8_ORYSJ,A0A0P0XUU7_ORYSJ IRL8 Os10g0456200 LOC_Os10g31790,Os10g0456200 OSNPB_100456200 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20949308}. FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. ENOG411DRCS Q9LPT3,Q8VXV8,F4I6J9 Q9LPT3_ARATH,Q8VXV8_ARATH,F4I6J9_ARATH Extracellular ligand-gated ion channel protein (DUF3537) (F11F12.5 protein),AT3g20300/MQC12_5 (Extracellular ligand-gated ion channel protein (DUF3537)),Extracellular ligand-gated ion channel protein (DUF3537) 51603,51326,49069 Extracellular ligand-gated ion channel protein (DUF3537) (F11F12.5 protein),AT3g20300/MQC12_5 (Extracellular ligand-gated ion channel protein (DUF3537)),Extracellular ligand-gated ion channel protein (DUF3537) integral component of membrane [GO:0016021] locus:2008046;,locus:2092424; AT1G50630,AT3G20300 extracellular ligand-gated ion channel Os06g0635200 protein (cDNA clone:J013149E13, full insert sequence) Q67V36 Q67V36_ORYSJ Os06g0635200 Os06g0635200 OSJNBa0019I19.14 OSNPB_060635200 ENOG411DRCR ARFC1 Q9LIK1 Q9LIK1_ARATH ADP-ribosylation factor C1 (ADP-ribosylation factor, putative) (Putative ADP-ribosylation factor) 20549 ADP-ribosylation factor C1 (ADP-ribosylation factor, putative) (Putative ADP-ribosylation factor) intracellular [GO:0005622]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264] locus:2084568; AT3G22950 ADP-ribosylation factor-like protein ADP-ribosylation factor-like protein 5, putative, expressed (Os11g0586900 protein) (cDNA clone:001-011-A04, full insert sequence) (cDNA clone:J023104M08, full insert sequence),Os10g0196700 protein Q2R1Y6,Q7G4F6 Q2R1Y6_ORYSJ,Q7G4F6_ORYSJ LOC_Os11g37640 Os11g0586900 OsJ_34504 OSNPB_110586900,Os10g0196700 LOC_Os10g12090 OSNPB_100196700 ENOG411DRCQ RGTB1,RGTB2 Q84J75,Q9LHL5,F4JZH8,A0A1I9LTJ2 PGTB1_ARATH,PGTB2_ARATH,F4JZH8_ARATH,A0A1I9LTJ2_ARATH Geranylgeranyl transferase type-2 subunit beta 1 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit beta 1) (Rab geranylgeranyl transferase beta subunit 1) (AtRGTB1) (Rab-GGT beta 1),Geranylgeranyl transferase type-2 subunit beta 2 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit beta 2) (Rab geranylgeranyl transferase beta subunit 2) (AtRGTB2) (Rab-GGT beta 2),RAB geranylgeranyl transferase beta subunit 1,RAB geranylgeranyl transferase beta subunit 2 DISRUPTION PHENOTYPE: Pleiotropic effects on plant growth and development, including dwarf size, aberrant root development, multiple inflorescence stems and small siliques mostly sterile. Impaired shoot gravitropism and photomorphogenesis (PubMed:20180921). The double mutant plants rgtb1 and rgtb2 are male sterile, due to shrunken pollen with abnormal exine structure, and strong disorganization of the endoplasmic reticulum membranes (PubMed:25316062). {ECO:0000269|PubMed:20180921, ECO:0000269|PubMed:25316062}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. The double mutant plants rgtb1 and rgtb2 are male sterile, due to shrunken pollen with abnormal exine structure, and strong disorganization of the endoplasmic reticulum membranes. {ECO:0000269|Ref.5}. Dwarf; Small rosette leaves; Increased branching; Abnormal flower morphology; Reduced fertility-Z. Zarsky-2010 FUNCTION: Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2 (PubMed:26589801). Involved in the geranylgeranylation of RABA2A (PubMed:20180921). In vitro, can prenylate PGGTI targets with the C-terminal sequence Cys-aliphatic-aliphatic-X (CaaX) with leucine in the terminal position. Substrates with the C-terminal sequence -CSIL such as ARAC11/ROP1 or GG2/AGG2 are prenylated independently of REP and when the beta subunit is associated with the alpha subunit RGTA1 (PubMed:26589801). {ECO:0000269|PubMed:20180921, ECO:0000269|PubMed:26589801}.; FUNCTION: Required for male fertility and root tip growth. {ECO:0000269|PubMed:25316062}.,FUNCTION: Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2 (PubMed:26589801). In vitro, can prenylate PGGTI targets with the C-terminal sequence Cys-aliphatic-aliphatic-X (CaaX) with leucine in the terminal position. Substrates with the C-terminal sequence -CSIL such as ARAC11/ROP1 or GG2/AGG2 are prenylated independently of REP and when the beta subunit is associated with the alpha subunit RGTA1 (PubMed:26589801). {ECO:0000269|PubMed:26589801}.; FUNCTION: Required for male fertility and root tip growth. {ECO:0000269|PubMed:25316062}. R-ATH-6803205;R-ATH-8873719; 2.5.1.60 35496,35193,35368,25657 Geranylgeranyl transferase type-2 subunit beta 1 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit beta 1) (Rab geranylgeranyl transferase beta subunit 1) (AtRGTB1) (Rab-GGT beta 1),Geranylgeranyl transferase type-2 subunit beta 2 (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit beta 2) (Rab geranylgeranyl transferase beta subunit 2) (AtRGTB2) (Rab-GGT beta 2),RAB geranylgeranyl transferase beta subunit 1,RAB geranylgeranyl transferase beta subunit 2 cytosol [GO:0005829]; Rab-protein geranylgeranyltransferase complex [GO:0005968]; metal ion binding [GO:0046872]; Rab geranylgeranyltransferase activity [GO:0004663]; pollen development [GO:0009555]; protein geranylgeranylation [GO:0018344]; root development [GO:0048364],Rab geranylgeranyltransferase activity [GO:0004663]; protein geranylgeranylation [GO:0018344] locus:2177058;,locus:2088614; AT5G12210,AT3G12070 geranylgeranyl transferase type-2 subunit Os08g0512300 protein (Putative Rab geranylgeranyltransferase, beta subunit) (cDNA clone:J033089B20, full insert sequence),Os11g0523500 protein,Os03g0193700 protein (Fragment) Q6Z8L7,A0A0P0Y3K4,A0A0P0VU37 Q6Z8L7_ORYSJ,A0A0P0Y3K4_ORYSJ,A0A0P0VU37_ORYSJ Os08g0512300 Os08g0512300 OSNPB_080512300 P0711H09.9,Os11g0523500 OSNPB_110523500,Os03g0193700 OSNPB_030193700 ENOG411DRCP Q8L7I1,A0A1P8B7Y2 Y4193_ARATH,A0A1P8B7Y2_ARATH Uncharacterized protein At4g10930,RING/U-box protein 108071,130024 Uncharacterized protein At4g10930,RING/U-box protein metal ion binding [GO:0046872] locus:2123431; AT4G10930 Inherit from NOG: RING NA NA NA NA NA NA NA ENOG411DRCZ gene1500 P94088 P94088_ARATH Arginine-aspartate-rich RNA binding protein-like (LUC7 N terminus domain-containing protein) (Putative arginine-aspartate-rich RNA binding protein) (Putative aspartate-arginine-rich mRNA binding protein) 38721 Arginine-aspartate-rich RNA binding protein-like (LUC7 N terminus domain-containing protein) (Putative arginine-aspartate-rich RNA binding protein) (Putative aspartate-arginine-rich mRNA binding protein) U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; mRNA binding [GO:0003729]; mRNA splice site selection [GO:0006376] locus:2163640; AT5G51410 luc7-like protein 3-like Os07g0456400 protein (Putative salt tolerance protein) (cDNA clone:001-116-B04, full insert sequence),Os07g0456400 protein (Fragment) Q84YS0,A0A0P0X5A0 Q84YS0_ORYSJ,A0A0P0X5A0_ORYSJ Os07g0456400 Os07g0456400 OsJ_24123 OSJNBa0027N13.116 OSNPB_070456400,Os07g0456400 OSNPB_070456400 ENOG411DRCY SCL28 Q9CAN3 SCL28_ARATH Scarecrow-like protein 28 (AtSCL28) (GRAS family protein 8) (AtGRAS-8) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 73481 Scarecrow-like protein 28 (AtSCL28) (GRAS family protein 8) (AtGRAS-8) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of brassinosteroid mediated signaling pathway [GO:1900459]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}. locus:2015243; AT1G63100 Scarecrow-like protein Protein DWARF AND LOW-TILLERING (GRAS family protein 32) (OsGRAS-32),Os03g0575900 protein,Os04g0447232 protein,Os07g0266800 protein Q9LWU9,A0A0P0W075,A0A0P0WB67,A0A0P0X4E3 DLT_ORYSJ,A0A0P0W075_ORYSJ,A0A0P0WB67_ORYSJ,A0A0P0X4E3_ORYSJ DLT GRAS2 Os06g0127800 LOC_Os06g03710 OsJ_19967 OSJNBa0038F22.20 P0425F02.54,Os03g0575900 OSNPB_030575900,Os04g0447232 OSNPB_040447232,Os07g0266800 OSNPB_070266800 DISRUPTION PHENOTYPE: Semi-dwarf phenotype with small and wide leaves. Erect leaf and panicle phenotype. Reduced lamina joint bending angles. Reduced tiller number and seed set. Reduced brassinosteroid sensitivity and altered expression of brassinosteroid-responsive genes. {ECO:0000269|PubMed:19220793}. FUNCTION: Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. ENOG411DRCX Q9C9A1 Q9C9A1_ARATH At1g71070/F23N20_6 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein F23N20.6) 44918 At1g71070/F23N20_6 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein F23N20.6) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375] locus:2026356; AT1G71070 xylosyltransferase Os01g0121800 protein (Putative xylosyltransferase I) (cDNA clone:J033043K22, full insert sequence),Os01g0121800 protein (Fragment) Q9ARU3,A0A0P0UY38 Q9ARU3_ORYSJ,A0A0P0UY38_ORYSJ Os01g0121800 OsJ_00184 OSNPB_010121800 P0445D12.5,Os01g0121800 OSNPB_010121800 ENOG411DRCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28 kDa cold-induced protein),Glutathione S-transferase GSTU6, putative, expressed (Os10g0531400 protein) (Putative glutathione S-transferase) (cDNA clone:006-211-B03, full insert sequence),Os10g0530900 protein (Fragment) Q06398,Q8L4V6,A0A0P0XXH4 GSTU6_ORYSJ,Q8L4V6_ORYSJ,A0A0P0XXH4_ORYSJ GSTU6 Os10g0530900 LOC_Os10g38740 OSJNBb0038A07.2,Os10g0531400 LOC_Os10g38780 Os10g0531400 OsJ_32249 OSJNBa0053C23.1 OSJNBb0038A07.1 OSNPB_100531400,Os10g0530900 OSNPB_100530900 FUNCTION: Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. ENOG411DRCF UTR7,UTr7 Q94B65,F4JSQ2 UTR7_ARATH,F4JSQ2_ARATH UDP-galactose/UDP-glucose transporter 7 (AtUTr7),UDP-N-acetylglucosamine (UAA) transporter family DISRUPTION PHENOTYPE: Early proliferation of lateral roots as well as distorted root hairs when cultivated at high sucrose concentrations. {ECO:0000269|PubMed:22933714}. FUNCTION: Nucleotide-sugar transporter that transports UDP-glucose and UDP-galactose. Plays a role in lateral root and root hair development. {ECO:0000269|PubMed:22933714}. 34625,34027 UDP-galactose/UDP-glucose transporter 7 (AtUTr7),UDP-N-acetylglucosamine (UAA) transporter family Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; UDP-galactose transmembrane transporter activity [GO:0005459]; UDP-glucose transmembrane transporter activity [GO:0005460]; lateral root development [GO:0048527]; root hair cell development [GO:0080147]; UDP-galactose transport [GO:0015785]; UDP-glucose transport [GO:0015786],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Widely expressed with highest expression in roots. {ECO:0000269|PubMed:22933714}. locus:2124819; AT4G31600 transporter Os06g0188100 protein (Putative UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter) (cDNA clone:J023009C20, full insert sequence) (cDNA clone:J023039L13, full insert sequence) Q69KL6 Q69KL6_ORYSJ Os06g0188100 OsJ_20396 OSJNBb0005A05.18 OSNPB_060188100 P0470C02.29 ENOG411DRCE PME12 O48711 PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 [Includes: Pectinesterase inhibitor 12 (Pectin methylesterase inhibitor 12); Pectinesterase 12 (PE 12) (EC 3.1.1.11) (Pectin methylesterase 12) (AtPME12)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT2G26440-MONOMER; 3.1.1.11 60417 Probable pectinesterase/pectinesterase inhibitor 12 [Includes: Pectinesterase inhibitor 12 (Pectin methylesterase inhibitor 12); Pectinesterase 12 (PE 12) (EC 3.1.1.11) (Pectin methylesterase 12) (AtPME12)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490]; response to bacterium [GO:0009617] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2066195; AT2G26440 pectinesterase Os06g0193200 protein (Putative pectin methylesterase) Q69Y54 Q69Y54_ORYSJ Os06g0193200 Os06g0193200 OSNPB_060193200 P0698A06.23 ENOG411DRCD REV1 A3EWL3 REV1_ARATH DNA repair protein REV1 (AtREV1) (EC 2.7.7.-) (Rev1-like terminal deoxycytidyl transferase) DISRUPTION PHENOTYPE: Reduced UV light- and gamma ray-induced mutation frequency. Slightly sensitive to ultraviolet-B (UV-B) and DNA cross-linkers (e.g. mitomycin C MMC and cisplatin). Lower germination rate. {ECO:0000269|PubMed:15908599, ECO:0000269|PubMed:18339443, ECO:0000269|PubMed:21030509, ECO:0000269|PubMed:21455019}. Mutant plants were moderately sensitive to UV-B irradiation than the wild type when mutant seedlings were irradiated with various doses of UV-B irradiation and grown in the light. Both root and aerial tissue growth were inhibited by UV-B irradiation.,Showed high sensitivity to UV-B gamma-rays and DNA cross-linkers. Both REV1 and REV3 transcripts were suppressed rev1rev3 double mutants. Sensitive to UV-B light-S. Takahashi-2008 FUNCTION: Deoxycytidyl transferase involved in DNA repair and translesion synthesis (TLS). Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. Mediates also the insertion of dTMP or dGMP when the opposite base is G, and, with a low efficiency, dGMP insertions opposite G, T, and C, dAMP insertions opposite G, A, and T, and dTMP insertion opposite A. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents (e.g. UV and gamma ray), mostly via G to T transversions, and of spontaneous mutations in somatic cells. Confers resistance to ultraviolet-B (UV-B) and various DNA cross-linkers (e.g. mitomycin C MMC and cisplatin). Promotes stem growth. {ECO:0000269|PubMed:17827267, ECO:0000269|PubMed:18339443, ECO:0000269|PubMed:21030509, ECO:0000269|PubMed:21455019}. ARA:AT5G44750-MONOMER; R-ATH-110312;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169; 2.7.7.- 122233 DNA repair protein REV1 (AtREV1) (EC 2.7.7.-) (Rev1-like terminal deoxycytidyl transferase) nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; cellular response to DNA damage stimulus [GO:0006974]; error-prone translesion synthesis [GO:0042276]; response to UV-B [GO:0010224] locus:2156319; AT5G44750 DNA repair protein DNA repair protein REV1 (EC 2.7.7.-),Os06g0691000 protein (Fragment) Q654Y6,A0A0P0X064 Q654Y6_ORYSJ,A0A0P0X064_ORYSJ Os06g0691000 Os06g0691000 OSNPB_060691000 P0532H03.8 P0661G04.41,Os06g0691000 OSNPB_060691000 FUNCTION: Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents. {ECO:0000256|PIRNR:PIRNR036573}. ENOG411DRCC DUF3,DUF4,DUF6,DUF1 Q9FZD9,O81039,O22897,Q9ZVT1,F4IL23 DUF3_ARATH,DUF4_ARATH,DUF6_ARATH,DUF1_ARATH,F4IL23_ARATH DUF724 domain-containing protein 3 (AtDUF3),DUF724 domain-containing protein 4 (AtDUF4),DUF724 domain-containing protein 6 (AtDUF6),DUF724 domain-containing protein 1 (AtDUF1),Uncharacterized protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19795213}. Homozygotes have a WT phenotype,same as smb-3 single mutant FUNCTION: May be involved in the polar growth of plant cells via transportation of RNAs. {ECO:0000305|PubMed:19795213}. 79211,23243,79607,76290,80755 DUF724 domain-containing protein 3 (AtDUF3),DUF724 domain-containing protein 4 (AtDUF4),DUF724 domain-containing protein 6 (AtDUF6),DUF724 domain-containing protein 1 (AtDUF1),Uncharacterized protein vacuole [GO:0005773]; protein homodimerization activity [GO:0042803]; regulation of growth [GO:0040008]; transport [GO:0006810],nucleus [GO:0005634]; regulation of growth [GO:0040008]; transport [GO:0006810],nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:19795213}.,TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:19795213}.,TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:19795213}. locus:2197985;,locus:2044355;,locus:2014505;,locus:2065180; AT1G26540,AT2G46840,AT2G47230,AT1G03300 agenet domain-containing protein NA NA NA NA NA NA NA ENOG411DRCB Q9MA87 Q9MA87_ARATH Glycosyltransferase (O-fucosyltransferase family protein) (T12H1.29 protein) 50648 Glycosyltransferase (O-fucosyltransferase family protein) (T12H1.29 protein) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2096239; AT3G05320 GDP-fucose protein O-fucosyltransferase Os02g0168500 protein (Putative GDP-fucose protein-O-fucosyltransferase) (cDNA clone:J033043N20, full insert sequence) Q6H6D5 Q6H6D5_ORYSJ Os02g0168500 Os02g0168500 OsJ_05536 OSNPB_020168500 P0669G09.11 ENOG411DRCA CRL1,CRL2 O22809,O22810 O22809_ARATH,O22810_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Putative cinnamoyl-CoA reductase),At2g33600 (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamoyl-CoA reductase) ARA:AT2G33590-MONOMER;,ARA:AT2G33600-MONOMER; 35875,35615 NAD(P)-binding Rossmann-fold superfamily protein (Putative cinnamoyl-CoA reductase),At2g33600 (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamoyl-CoA reductase) catalytic activity [GO:0003824]; coenzyme binding [GO:0050662]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to water deprivation [GO:0009414],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2051008;,locus:2051018; AT2G33590,AT2G33600 Male sterility protein Os06g0623600 protein (Putative cinnamoyl-CoA reductase) (cDNA clone:J033052J24, full insert sequence),Os03g0817400 protein,Os10g0553450 protein,Os01g0239050 protein Q69U02,B9F6Z2,A0A0P0XX05,A0A0N7KCM8 Q69U02_ORYSJ,B9F6Z2_ORYSJ,A0A0P0XX05_ORYSJ,A0A0N7KCM8_ORYSJ Os06g0623600 Os06g0623600 OsJ_22020 OSJNBa0029G06.7 OSNPB_060623600,Os03g0817400 OsJ_13113 OSNPB_030817400,Os10g0553450 OSNPB_100553450,Os01g0239050 OSNPB_010239050 ENOG411DRCM GC4,GC3,GDAP1 Q8VYU6,Q84WU4,A0A1I9LRB9 GOGC4_ARATH,GOGC3_ARATH,A0A1I9LRB9_ARATH Golgin candidate 4 (AtGC4),Golgin candidate 3 (AtGC3) (GRIP-related ARF-binding domain-containing Arabidopsis protein 1),GRIP-related ARF-binding domain-containing protein 1 FUNCTION: Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. {ECO:0000250}.,FUNCTION: Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. 82866,81723,77830 Golgin candidate 4 (AtGC4),Golgin candidate 3 (AtGC3) (GRIP-related ARF-binding domain-containing Arabidopsis protein 1),GRIP-related ARF-binding domain-containing protein 1 Golgi apparatus [GO:0005794]; Golgi organization [GO:0007030],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi organization [GO:0007030] locus:2062984;,locus:2082782; AT2G46180,AT3G61570 golgin candidate Os08g0386900 protein (Fragment) A0A0P0XFD1 A0A0P0XFD1_ORYSJ Os08g0386900 OSNPB_080386900 ENOG411DRCK O48962 EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase (EC 5.3.3.5) (Cholestenol Delta-isomerase) (Delta(8)-Delta(7) sterol isomerase) (D8-D7 sterol isomerase) Embryo and seedling defective-K. Lindsey-2002 FUNCTION: Catalyzes the conversion of Delta(8)-sterols to their corresponding Delta(7)-isomers. {ECO:0000250}. PATHWAY: Steroid biosynthesis; sterol biosynthesis. ARA:AT1G20050-MONOMER;MetaCyc:AT1G20050-MONOMER; R-ATH-6807047;R-ATH-6807062; 5.3.3.5 25146 Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase (EC 5.3.3.5) (Cholestenol Delta-isomerase) (Delta(8)-Delta(7) sterol isomerase) (D8-D7 sterol isomerase) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; C-8 sterol isomerase activity [GO:0000247]; cholestenol delta-isomerase activity [GO:0047750]; sterol biosynthetic process [GO:0016126] locus:2198626; AT1G20050 cholestenol delta-isomerase activity Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase (EC 5.3.3.5) (Cholestenol Delta-isomerase) (Delta(8)-Delta(7) sterol isomerase) (D8-D7 sterol isomerase),Os01g0103600 protein Q9FTZ2,A0A0P0UXE4 EBP_ORYSJ,A0A0P0UXE4_ORYSJ Os01g0103600 LOC_Os01g01369 P0436E04.5 P0455C04.26,Os01g0103600 OSNPB_010103600 FUNCTION: Catalyzes the conversion of Delta(8)-sterols to their corresponding Delta(7)-isomers. {ECO:0000250}. ENOG411DRCJ Q93XX5 Y5713_ARATH PI-PLC X domain-containing protein At5g67130 46607 PI-PLC X domain-containing protein At5g67130 anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] locus:2155523; AT5G67130 PI-PLC X domain-containing protein MAP3K protein kinase-like protein (Os09g0115600 protein) (cDNA clone:J033028L08, full insert sequence) Q6YW97 Q6YW97_ORYSJ Os09g0115600 Os09g0115600 OJ1310_F05.17 OsJ_28394 OSNPB_090115600 P0563F09.1 ENOG411DRCI PCMP-E41 Q9FIF7 PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 80) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19934379}. FUNCTION: Involved in RNA editing event in chloroplasts. Required for the editing of a single site in rpl23 transcript. {ECO:0000269|PubMed:19934379}. 61356 Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 80) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425]; mRNA processing [GO:0006397] locus:2168534; AT5G59200 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DRCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF630) Os09g0368900 protein A3BY53 A3BY53_ORYSJ Os09g0368900 OsJ_29110 OSNPB_090368900 ENOG411DUA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain OSJNBb0011N17.18 protein (Os04g0482300 protein) (cDNA clone:002-103-B11, full insert sequence),Os02g0596700 protein Q7XUP5,A0A0P0VL49 Q7XUP5_ORYSJ,A0A0P0VL49_ORYSJ Os04g0482300 Os04g0482300 OSJNBb0011N17.18 OSNPB_040482300,Os02g0596700 OSNPB_020596700 ENOG411EEG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: guanine nucleotide exchange factor NA NA NA NA NA NA NA ENOG411E9Z4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31) (Fragment) Q0JC49 Q0JC49_ORYSJ Os04g0492100 Os04g0492100 OSNPB_040492100 ENOG411E9Z7 MSSP3,TMT3 Q9SD00,F4J4E8,A0A1I9LSV4 MSSP3_ARATH,F4J4E8_ARATH,A0A1I9LSV4_ARATH Monosaccharide-sensing protein 3 (Sugar transporter MSSP3),Tonoplast monosaccharide transporter3 Although no variation in sucrose content of leaves placed under normal temperature conditions compared to wild type leaves a substantial decrease in sucrose content was observed when the plants were placed under cold treatment (24h).,No visible phenotype.,The vacuoles of this mutant exhibit a substantially reduced capacity to import glucose.,Under cold treatment (24h) the decrease in glucose and fructose content in leaves is more drastically reduced compared to that of wild type and even that of the tmt1 single mutants.,Under normal temperature conditions a substantial reduction in glucose and fructose contents in leaves is observed compared to wild type and even the single tmt1 and double tmt1/tmt2 mutants. 78828,79757,74382 Monosaccharide-sensing protein 3 (Sugar transporter MSSP3),Tonoplast monosaccharide transporter3 integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; substrate-specific transmembrane transporter activity [GO:0022891],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2081820; AT3G51490 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411E9Z8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411E9Z9 ACR5 Q9ZPQ8 ACR5_ARATH ACT domain-containing protein ACR5 (Protein ACT DOMAIN REPEATS 5) FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 51144 ACT domain-containing protein ACR5 (Protein ACT DOMAIN REPEATS 5) amino acid binding [GO:0016597] TISSUE SPECIFICITY: Expressed in stems and siliques. {ECO:0000269|PubMed:12481063}. locus:2044289; AT2G03730 ACT domain NA NA NA NA NA NA NA ENOG411E9ZU ERF042 Q52QU1 ERF42_ARATH Ethylene-responsive transcription factor ERF042 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 24865 Ethylene-responsive transcription factor ERF042 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen. {ECO:0000269|PubMed:16307362}. locus:2043495; AT2G25820 Transcription factor NA NA NA NA NA NA NA ENOG411DXQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein 5NG4-like WAT1-related protein,Os12g0288000 protein,WAT1-related protein (Fragment) Q2QTP4,A0A0N7KTW6,A0A0P0Y971,A0A0P0WL94 Q2QTP4_ORYSJ,A0A0N7KTW6_ORYSJ,A0A0P0Y971_ORYSJ,A0A0P0WL94_ORYSJ Os12g0288000 LOC_Os12g18960 OSNPB_120288000,Os12g0288000 OSNPB_120288000,Os05g0357500 OSNPB_050357500 ENOG411DXQ4 VAMP724 O23429 VA724_ARATH Vesicle-associated membrane protein 724 (AtVAMP724) (SYBL1-like protein) FUNCTION: Involved in the targeting and/or fusion of transport vesicles to their target membrane. {ECO:0000305|PubMed:11115874}. 25209 Vesicle-associated membrane protein 724 (AtVAMP724) (SYBL1-like protein) early endosome membrane [GO:0031901]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906] TISSUE SPECIFICITY: Expressed in flowers, leaves, stems and roots. {ECO:0000269|PubMed:15342965}. AT4G15780 vesicle-associated membrane protein Os07g0249200 protein (Putative Vesicle-associated membrane protein) (cDNA clone:006-208-G08, full insert sequence) (cDNA clone:J033099G24, full insert sequence) Q8H3D2 Q8H3D2_ORYSJ P0021G06.107 Os07g0249200 OsJ_23713 OSNPB_070249200 P0639B07.36 ENOG411DXQ0 Q8GZ75,A0A1P8AX91,A0A1P8AX63 Q8GZ75_ARATH,A0A1P8AX91_ARATH,A0A1P8AX63_ARATH At2g03780 (Translin family protein) (Uncharacterized protein At2g03780/F19B11.23),Translin family protein R-ATH-426486; 32704,27895,22945 At2g03780 (Translin family protein) (Uncharacterized protein At2g03780/F19B11.23),Translin family protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565],sequence-specific DNA binding [GO:0043565] locus:2044264; AT2G03780 Translin-associated protein Os01g0265900 protein A0A0P0V0P5 A0A0P0V0P5_ORYSJ Os01g0265900 OSNPB_010265900 ENOG411EM6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 68 (OsPP2C68) (EC 3.1.3.16) Q0J2L7 P2C68_ORYSJ Os09g0325700 LOC_Os09g15670 OsJ_027745 P0692F07.24 ENOG411DXQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os01g0625900 protein (cDNA clone:001-117-G11, full insert sequence),Os05g0583600 protein Q5ZEA2,A0A0P0WRD9 Q5ZEA2_ORYSJ,A0A0P0WRD9_ORYSJ Os01g0625900 Os01g0625900 OsJ_02670 OSNPB_010625900 P0006C01.17,Os05g0583600 OSNPB_050583600 ENOG411DXQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Lipase class 3 family protein NA NA NA NA NA NA NA ENOG411DXQA AUG8,QWRF4,QWRF8 Q9SUH5,F4INP9,Q9SUH2,A0A1P8B957 AUG8_ARATH,QWRF4_ARATH,Q9SUH2_ARATH,A0A1P8B957_ARATH AUGMIN subunit 8 (QWRF motif-containing protein 8) (ROP1 enhancer 2),QWRF motif-containing protein 4,QWRF motif protein (Uncharacterized protein AT4g30740) (Uncharacterized protein T10C21.90),QWRF motif protein (DUF566) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:22505726). Longer hypocotyls in dark grown seedlings with epidermal cells exhibiting left-handed twisting cell files (PubMed:23735294). {ECO:0000269|PubMed:23735294, ECO:0000303|PubMed:22505726}. FUNCTION: Contributes to the assembly of the acentrosomal spindle and phragmoplast microtubule arrays as part of the augmin complex. Microtubule plus-end binding protein promoting tubulin polymerization and microtubule reorientation in hypocotyls. Promotes microtubule branching. Plays an important role in modulating hypocotyl growth. {ECO:0000269|PubMed:23735294}. 69846,66940,10077,66020 AUGMIN subunit 8 (QWRF motif-containing protein 8) (ROP1 enhancer 2),QWRF motif-containing protein 4,QWRF motif protein (Uncharacterized protein AT4g30740) (Uncharacterized protein T10C21.90),QWRF motif protein (DUF566) microtubule [GO:0005874]; cell cycle [GO:0007049]; cell division [GO:0051301],apoplast [GO:0048046] TISSUE SPECIFICITY: Expressed in hypocotyls of light grown seedlings. Expressed in roots and leaves. {ECO:0000269|PubMed:23735294}. locus:2131949;,locus:2061416;,locus:2131974; AT4G30710,AT2G24070,AT4G30740 expressed protein NA NA NA NA NA NA NA ENOG411EITZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0718800 protein,Os01g0722600 protein,Os12g0283000 protein Q5JL99,Q8W0C7,A0A0P0Y926 Q5JL99_ORYSJ,Q8W0C7_ORYSJ,A0A0P0Y926_ORYSJ Os01g0718800 OsJ_03267 OSNPB_010718800 P0480C01.23,Os01g0722600 OsJ_03299 OSNPB_010722600 P0022F10.6 P0690B02.33,Os12g0283000 OSNPB_120283000 ENOG411EITU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0855800 protein,Os01g0845900 protein (Os01g0845950 protein) (Fragment),Os07g0190400 protein,Os01g0631000 protein,Os12g0539800 protein (Fragment) Q75IQ1,C7IWG6,Q6Z4I7,A0A0P0V5M3,A0A0P0YAZ6 Q75IQ1_ORYSJ,C7IWG6_ORYSJ,Q6Z4I7_ORYSJ,A0A0P0V5M3_ORYSJ,A0A0P0YAZ6_ORYSJ Os03g0855800 LOC_Os03g63880 Os03g63880 OSNPB_030855800,Os01g0845950 Os01g0845900 OSNPB_010845950,Os07g0190400 OSJNBb0003E08.22 OSNPB_070190400,Os01g0631000 OSNPB_010631000,Os12g0539800 OSNPB_120539800 ENOG411EITK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0488900 protein A0A0N7KJ99 A0A0N7KJ99_ORYSJ Os04g0488900 OSNPB_040488900 ENOG411EITH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: small proline-rich protein 3 NA NA NA NA NA NA NA ENOG411EITI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EITN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITB Q9ZV91,Q4PSI6 FBD35_ARATH,FBD13_ARATH Putative FBD-associated F-box protein At1g78730,FBD-associated F-box protein At4g13985 48280,52881 Putative FBD-associated F-box protein At1g78730,FBD-associated F-box protein At4g13985 locus:2037613;,locus:505006455; AT1G78730,AT4G13985 FBOX NA NA NA NA NA NA NA ENOG411EITC O04586 O04586_ARATH F19K23.14 protein 17649 F19K23.14 protein locus:2018047; AT1G62210 NA NA NA NA NA NA NA NA ENOG411EITA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EITE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0956700 protein (cDNA clone:002-104-A04, full insert sequence),Os05g0175000 protein,Os05g0175033 protein Q5JK54,A0A0P0WIM1,A0A0P0WIN3 Q5JK54_ORYSJ,A0A0P0WIM1_ORYSJ,A0A0P0WIN3_ORYSJ Os01g0956700 OJ1294_F06.7 OSNPB_010956700,Os05g0175000 OSNPB_050175000,Os05g0175033 OSNPB_050175033 ENOG411EIT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIT3 Q1G3Z2,Q8L9S8 Q1G3Z2_ARATH,Q8L9S8_ARATH Transmembrane protein,Cryptdin protein-like protein 8344,7244 Transmembrane protein,Cryptdin protein-like protein integral component of membrane [GO:0016021] locus:4010713538;,locus:505006179; AT1G51913,AT1G51915 NA NA NA NA NA NA NA NA ENOG411EIT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0720650 protein,Os03g0802050 protein Q6ASV2,A0A0P0W4E5 Q6ASV2_ORYSJ,A0A0P0W4E5_ORYSJ B1377B10.15 Os03g0720650 LOC_Os03g51100 OsJ_12380 OSNPB_030720650,Os03g0802050 OSNPB_030802050 ENOG411EIT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60s Acidic ribosomal protein NA NA NA NA NA NA NA ENOG411EIT6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIT4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: membrane-bound transcription factor peptidase site 2 NA NA NA NA NA NA NA ENOG411EIT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7T4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0123400 protein A0A0P0XBT1 A0A0P0XBT1_ORYSJ Os08g0123400 OSNPB_080123400 ENOG411E7T5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411E7T6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Tetraspanin family NA NA NA NA NA NA NA ENOG411E7T7 GAG1At Q9SAH1,P93048 Q9SAH1_ARATH,P93048_ARATH At1g80890 (F23A5.25 protein) (GAG1At protein) (Uncharacterized protein At1g80890),GAG1At protein (T24D18.10 protein) (Uncharacterized protein At1g16000) (Uncharacterized protein At1g16000/T24D18_10) 8809,9290 At1g80890 (F23A5.25 protein) (GAG1At protein) (Uncharacterized protein At1g80890),GAG1At protein (T24D18.10 protein) (Uncharacterized protein At1g16000) (Uncharacterized protein At1g16000/T24D18_10) integral component of membrane [GO:0016021] locus:2025757;,locus:2200512; AT1G80890,AT1G16000 NA Os12g0556400 protein,Os08g0272000 protein (Fragment) Q2QNS1,Q0J6S6 Q2QNS1_ORYSJ,Q0J6S6_ORYSJ Os12g0556400 LOC_Os12g36930 OsJ_36477 OSNPB_120556400,Os08g0272000 Os08g0272000 OSNPB_080272000 ENOG411E7T0 A8MSB8,F4IPU5 A8MSB8_ARATH,F4IPU5_ARATH Transmembrane protein, putative (DUF3317) 7165,7135 Transmembrane protein, putative (DUF3317) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; protein complex binding [GO:0032403]; pollen development [GO:0009555]; positive regulation of serine C-palmitoyltransferase activity [GO:1904222]; regulation of sphingolipid biosynthetic process [GO:0090153],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; positive regulation of serine C-palmitoyltransferase activity [GO:1904222]; regulation of sphingolipid biosynthetic process [GO:0090153] locus:4010713417;,locus:1006230071; AT1G06515,AT2G30942 Protein of unknown function (DUF3317) Os07g0446900 protein A0A0P0X559 A0A0P0X559_ORYSJ Os07g0446900 OSNPB_070446900 ENOG411E7T1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0209400 protein (cDNA clone:002-139-B10, full insert sequence) Q6H8D3 Q6H8D3_ORYSJ Os02g0209400 OJ1006_A02.27 OSNPB_020209400 ENOG411E7T2 Q1G3M8 Q1G3M8_ARATH Uncharacterized protein 10441 Uncharacterized protein locus:4515103033; AT3G05858 NA NA NA NA NA NA NA NA ENOG411E7T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein Os06g0729400 protein (cDNA clone:001-029-A05, full insert sequence) Q5Z5B0 Q5Z5B0_ORYSJ Os06g0729400 OsJ_22737 OSJNBa0069C14.13 OSNPB_060729400 ENOG411E7T8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0847100 protein Q5N788 Q5N788_ORYSJ P0005H10.10-1 P0446B05.38-1 Os01g0847100 OsJ_04068 OSNPB_010847100 ENOG411E7T9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411E7TD Q9LSC1 Q9LSC1_ARATH At3g15900 (Homoserine O-acetyltransferase) 15010 At3g15900 (Homoserine O-acetyltransferase) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2093905; AT3G15900 NA Os02g0804400 protein (cDNA clone:001-101-C12, full insert sequence) Q6K851 Q6K851_ORYSJ Os02g0804400 OJ1548_F12.7 OsJ_08770 OSNPB_020804400 P0689B12.42 ENOG411E7TE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentapeptide repeats (8 copies) NA NA NA NA NA NA NA ENOG411E7TF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E7TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os07g0438600 protein (cDNA clone:J033088K11, full insert sequence) Q6Z159 Q6Z159_ORYSJ Os07g0438600 OsJ_24048 OSJNBa0026I22.16 OSNPB_070438600 P0443H10.1 ENOG411E7TA Q9FZK5 Q9FZK5_ARATH F17L21.9 (Transmembrane protein) (Uncharacterized protein At1g27300; F17L21.9) 22420 F17L21.9 (Transmembrane protein) (Uncharacterized protein At1g27300; F17L21.9) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:2015954; AT1G27300 NA Os02g0509600 protein (cDNA clone:002-175-E10, full insert sequence) Q6K2F2 Q6K2F2_ORYSJ Os02g0509600 Os02g0509600 OsJ_06867 OSJNBa0052M16.34 OSNPB_020509600 ENOG411E7TB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0381200 protein,Os06g0114400 protein (Fragment),Os03g0627000 protein B9G5H0,A0A0P0WS91,A0A0P0W0F4 B9G5H0_ORYSJ,A0A0P0WS91_ORYSJ,A0A0P0W0F4_ORYSJ Os10g0381200 OsJ_31322 OSNPB_100381200,Os06g0114400 OSNPB_060114400,Os03g0627000 OSNPB_030627000 ENOG411E7TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0535700 protein (cDNA clone:001-021-H05, full insert sequence) (cDNA clone:001-104-G06, full insert sequence) Q6L5I8 Q6L5I8_ORYSJ Os05g0535700 Os05g0535700 OJ1741_B01.6 OSNPB_050535700 ENOG411E7TM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E7TN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E7TH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0888900 protein Q5N819 Q5N819_ORYSJ Os01g0888900 Os01g0888900 B1099D03.35 OSNPB_010888900 ENOG411E7TI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0174800 protein (Fragment) A0A0P0VTP4 A0A0P0VTP4_ORYSJ Os03g0174800 OSNPB_030174800 ENOG411E7TJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3681) NA NA NA NA NA NA NA ENOG411E7TK MBG8.20 Q8L7T9,Q2V2Y5 Q8L7T9_ARATH,Q2V2Y5_ARATH AT hook motif-containing protein (AT5g54930/MBG8_20),AT hook motif-containing protein (AT5G54930 protein) 31545,31247 AT hook motif-containing protein (AT5g54930/MBG8_20),AT hook motif-containing protein (AT5G54930 protein) sequence-specific DNA binding [GO:0043565] locus:2160240; AT5G54930 AT hook motif-containing protein NA NA NA NA NA NA NA ENOG411E7TT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DENN NA NA NA NA NA NA NA ENOG411E7TU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxin-dependent bilin reductase NA NA NA NA NA NA NA ENOG411E7TV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0118900 protein Q5VPR4 Q5VPR4_ORYSJ Os06g0118900 OSJNBa0062J13.33 OSNPB_060118900 P0660D08.2 ENOG411E7TW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0242300 protein) (cDNA clone:J013002A22, full insert sequence) Q10P95 Q10P95_ORYSJ LOC_Os03g13870 Os03g0242300 OSNPB_030242300 ENOG411E7TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0288800 protein (cDNA clone:002-152-B05, full insert sequence),Os01g0289100 protein Q0JNI1,A0A0P0V1A7 Q0JNI1_ORYSJ,A0A0P0V1A7_ORYSJ Os01g0288800 Os01g0288800 OsJ_01380 OSNPB_010288800,Os01g0289100 OSNPB_010289100 ENOG411E7TQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3638) NA NA NA NA NA NA NA ENOG411E7TR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7TS LTP11 Q2V3C1 NLTPB_ARATH Non-specific lipid-transfer protein 11 (LTP 11) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 12640 Non-specific lipid-transfer protein 11 (LTP 11) membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:504955533; AT4G33355 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E7TX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0115500 protein (Fragment) A0A0N7KMU6 A0A0N7KMU6_ORYSJ Os07g0115500 OSNPB_070115500 ENOG411E7TY F4JN57 F4JN57_ARATH DDE family endonuclease 60017 DDE family endonuclease endonuclease activity [GO:0004519] locus:2123376; AT4G10890 Protein of unknown function (DUF2439) NA NA NA NA NA NA NA ENOG411E7TZ Q8L8L9 Y4216_ARATH Uncharacterized protein At4g22160 18210 Uncharacterized protein At4g22160 locus:2132011; AT4G22160 NA NA NA NA NA NA NA NA ENOG411DZ93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion transport protein Os09g0558300 protein (Putative cyclic nucleotide gated channel homolog),Os09g0558300 protein (Fragment) Q653S0,A0A0N7KR93 Q653S0_ORYSJ,A0A0N7KR93_ORYSJ Os09g0558300 OJ1065_E04.6 OsJ_30314 OSNPB_090558300,Os09g0558300 OSNPB_090558300 ENOG411DZ92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Serine/threonine-protein kinase SAPK4 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 4) (RK2 kinase) (stress-activated protein kinase 4) (OsSAPK4),Os01g0869900 protein (Fragment) Q5N942,A0A0P0VAV0 SAPK4_ORYSJ,A0A0P0VAV0_ORYSJ SAPK4 RK2 Os01g0869900 LOC_Os01g64970 OsJ_04228 P0039A07.8-1 P0677H08.40-1,Os01g0869900 OSNPB_010869900 FUNCTION: May play a role in signal transduction of hyperosmotic response. ENOG411DZ97 TRM30 Q9FMZ3,A0A1P8BCS0,F4K323 Q9FMZ3_ARATH,A0A1P8BCS0_ARATH,F4K323_ARATH Uncharacterized protein 92530,92402,92043 Uncharacterized protein locus:2165507; AT5G42710 NA Expressed protein (Os03g0775700 protein) (Putative glutamic acid-rich protein) Q8H8M9 Q8H8M9_ORYSJ LOC_Os03g56430 Os03g0775700 OsJ_12776 OSJNBa0070N04.4 OSNPB_030775700 ENOG411DZ9N PCMP-H71 Q9CA54,A0A1P8APP2 PP122_ARATH,A0A1P8APP2_ARATH Pentatricopeptide repeat-containing protein At1g74630,Tetratricopeptide repeat (TPR)-like superfamily protein 72226,74105 Pentatricopeptide repeat-containing protein At1g74630,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451],integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2019160; AT1G74630 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DZ9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hippocampus abundant transcript-like protein 1-like Os11g0151500 protein (Fragment) Q0IUK3 Q0IUK3_ORYSJ Os11g0151500 OSNPB_110151500 ENOG411DZ9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family Os12g0569300 protein (Thaumatin-like cytokinin-binding protein, putative, expressed) (cDNA, clone: J065176M21, full insert sequence),Os12g0569500 protein (Pathogenesis-related protein 5, putative, expressed) Q2QND8,Q2QND6 Q2QND8_ORYSJ,Q2QND6_ORYSJ Os12g0569300 LOC_Os12g38150 Os12g0569300 OSNPB_120569300,LOC_Os12g38170 Os12g0569500 OsJ_36563 OSNPB_120569500 ENOG411EEE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase At1g56130-like NA NA NA NA NA NA NA ENOG411EEE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar efflux transporter for intercellular exchange Bidirectional sugar transporter SWEET4 (OsSWEET4) Q6K4V2 SWET4_ORYSJ SWEET4 Os02g0301100 LOC_Os02g19820 OsJ_06370 OSJNBa0010K08.10 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. ENOG411EEE2 Q9FIH4 FB280_ARATH Putative F-box protein At5g42430 45732 Putative F-box protein At5g42430 locus:2162281; AT5G42430 F-box associated domain NA NA NA NA NA NA NA ENOG411EEE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EEE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEEQ PUB12 Q9ZV31 PUB12_ARATH U-box domain-containing protein 12 (EC 2.3.2.27) (Plant U-box protein 12) (RING-type E3 ubiquitin transferase PUB12) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 71942 U-box domain-containing protein 12 (EC 2.3.2.27) (Plant U-box protein 12) (RING-type E3 ubiquitin transferase PUB12) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842] AT2G28830 Kinesin-associated protein (KAP) NA NA NA NA NA NA NA ENOG411EEER Q9SA87 BBE10_ARATH Berberine bridge enzyme-like 10 (AtBBE-like 10) (EC 1.1.1.-) ARA:AT1G30720-MONOMER; 1.1.1.- 58879 Berberine bridge enzyme-like 10 (AtBBE-like 10) (EC 1.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2204624; AT1G30720 domain-containing protein NA NA NA NA NA NA NA ENOG411EEEY TPS28 Q9C748,Q9C749 TPS28_ARATH,Q9C749_ARATH Terpenoid synthase 28 (AtTPS28) (EC 4.2.3.-),Terpene cyclase, putative (Terpenoid cyclases/Protein prenyltransferases superfamily protein) PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT1G48800-MONOMER;,ARA:AT1G48820-MONOMER; 4.2.3.- 69656,64877 Terpenoid synthase 28 (AtTPS28) (EC 4.2.3.-),Terpene cyclase, putative (Terpenoid cyclases/Protein prenyltransferases superfamily protein) cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpenoid biosynthetic process [GO:0016114],magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; transferase activity [GO:0016740]; metabolic process [GO:0008152] locus:2008179;,locus:2008169; AT1G48800,AT1G48820 Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411EEEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EEEE Q8RXU9 Q8RXU9_ARATH C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Putative phosphoribosylanthranilate transferase) 114679 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Putative phosphoribosylanthranilate transferase) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2127103; AT4G00700 domain-containing protein NA NA NA NA NA NA NA ENOG411EEED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Transferase NA NA NA NA NA NA NA ENOG411EEEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EEEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Os06g0217900 protein A0A0P0WTZ5 A0A0P0WTZ5_ORYSJ Os06g0217900 OSNPB_060217900 ENOG411EEEA CWINV6,cwINV6 Q8W4S6,A0A1P8BBC3,F4JZE3 INV6_ARATH,A0A1P8BBC3_ARATH,F4JZE3_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV6 (6 and 1-fructan exohydrolase) (6&1-FEH) (EC 3.2.1.80) (Cell wall beta-fructosidase 6) (Cell wall invertase 6) (AtcwINV6) (Sucrose hydrolase 6),6-&1-fructan exohydrolase FUNCTION: 6 and 1-fructan exohydrolase that can degrade both inulin and levan-type fructans, such as phlein, levan, neokestose, levanbiose, 6-kestose, 1-kestose, inulin, and 1,1-nystose. {ECO:0000269|Ref.5}. ARA:AT5G11920-MONOMER; 3.2.1.80 62098,58018,48850 Beta-fructofuranosidase, insoluble isoenzyme CWINV6 (6 and 1-fructan exohydrolase) (6&1-FEH) (EC 3.2.1.80) (Cell wall beta-fructosidase 6) (Cell wall invertase 6) (AtcwINV6) (Sucrose hydrolase 6),6-&1-fructan exohydrolase apoplast [GO:0048046]; cell wall [GO:0005618]; fructan beta-fructosidase activity [GO:0051669]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in seedlings and leaves, and, to a lower extent, in flowers and seeds. {ECO:0000269|PubMed:12508063}. locus:2143099; AT5G11920 6- 1-fructan exohydrolase NA NA NA NA NA NA NA ENOG411EEEC NAC024,ANAC023 O80756,O80759,O80755,O80752,O80751,Q1ECJ5 O80756_ARATH,O80759_ARATH,O80755_ARATH,O80752_ARATH,O80751_ARATH,Q1ECJ5_ARATH NAC domain containing protein 24 (T13D8.22 protein) (Uncharacterized protein At1g60350),Apical meristem formation protein-related (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) (T13D8.25 protein) (Uncharacterized protein At1g60380),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (T13D8.21 protein),Apical meristem formation protein-related (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) (T13D8.18 protein),At1g60280 (NAC domain containing protein 23) (T13D8.17 protein),At1g60240 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) 37384,37404,42933,37851,40572,21319 NAC domain containing protein 24 (T13D8.22 protein) (Uncharacterized protein At1g60350),Apical meristem formation protein-related (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) (T13D8.25 protein) (Uncharacterized protein At1g60380),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (T13D8.21 protein),Apical meristem formation protein-related (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) (T13D8.18 protein),At1g60280 (NAC domain containing protein 23) (T13D8.17 protein),At1g60240 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2195703;,locus:2195583;,locus:2195693;,locus:2195663;,locus:2195658;,locus:2195618; AT1G60350,AT1G60380,AT1G60340,AT1G60300,AT1G60280,AT1G60240 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EEEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411EEEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0156400 protein (Putative phytosulfokine receptor) (cDNA clone:J023090H21, full insert sequence) Q6ET59 Q6ET59_ORYSJ Os02g0156400 Os02g0156400 OsJ_05435 OSNPB_020156400 P0419H03.8 ENOG411EEEN PYL6 Q8S8E3 PYL6_ARATH Abscisic acid receptor PYL6 (ABI1-binding protein 5) (PYR1-like protein 6) (Regulatory components of ABA receptor 9) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) in an ABA-independent manner but more efficiently when activated by ABA (PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). May link ABA and jasmonate signaling pathways by modifying MYC2 transcriptional activity, and regulation of JAZ6 and JAZ8 gene expression by MYC2 (PubMed:27357749). {ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015, ECO:0000269|PubMed:27357749}. 23843 Abscisic acid receptor PYL6 (ABI1-binding protein 5) (PYR1-like protein 6) (Regulatory components of ABA receptor 9) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738] locus:2063063; AT2G40330 abscisic acid receptor NA NA NA NA NA NA NA ENOG411EEEI Q8VZC7 DRL36_ARATH Probable disease resistance protein At5g45510 FUNCTION: Probable disease resistance protein. {ECO:0000250}. 137926 Probable disease resistance protein At5g45510 cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2163588; AT5G45510 Inherit from euNOG: defense response NA NA NA NA NA NA NA ENOG411EEEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PAL NA NA NA NA NA NA NA ENOG411EEEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EEEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mycolic acid cyclopropane synthetase NA NA NA NA NA NA NA ENOG411E35W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: DNA-binding protein-related Os06g0103400 protein (Fragment),Os06g0103400 protein (cDNA clone:J023107F06, full insert sequence) Q0DFB8,Q8H632 Q0DFB8_ORYSJ,Q8H632_ORYSJ Os06g0103400 Os06g0103400 OSNPB_060103400,Os06g0103400 OsJ_19812 OSJNBa0075G19.27-1 OSNPB_060103400 ENOG411E35U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA structural constituent of ribosome NA NA NA NA NA NA NA ENOG411E35T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0548100 protein (Putative VIP1 protein) (cDNA clone:001-008-B08, full insert sequence) (cDNA clone:J023113L22, full insert sequence) Q5KQD2 Q5KQD2_ORYSJ Os05g0548100 OSJNOa0014E02.4 OSNPB_050548100 ENOG411E35S GOT1,T9C5.20 Q6NMM1,Q9SCL4,A0A1I9LRD0,A0A1I9LRD1 GOT1_ARATH,Q9SCL4_ARATH,A0A1I9LRD0_ARATH,A0A1I9LRD1_ARATH Vesicle transport protein GOT1 (Golgi transport 1),At3g49420 (Got1/Sft2-like vescicle transport protein family) (Uncharacterized protein At3g49420; T9C5.20) (Uncharacterized protein At5g01430) (Uncharacterized protein T10O8_140) (Uncharacterized protein T9C5.20),Got1/Sft2-like vescicle transport protein family FUNCTION: May be involved in fusion of ER-derived transport vesicles with the Golgi complex. {ECO:0000250|UniProtKB:Q6ZVE7}. 15717,15986,11624,21511 Vesicle transport protein GOT1 (Golgi transport 1),At3g49420 (Got1/Sft2-like vescicle transport protein family) (Uncharacterized protein At3g49420; T9C5.20) (Uncharacterized protein At5g01430) (Uncharacterized protein T10O8_140) (Uncharacterized protein T9C5.20),Got1/Sft2-like vescicle transport protein family Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] locus:2097745;,locus:2114638;locus:2179167; AT3G03180,AT3G49420AT5G01430; transport protein Os10g0337600 protein (cDNA, clone: J065013H19, full insert sequence),Got1-like family protein, expressed (Os03g0209400 protein) (cDNA clone:006-205-H12, full insert sequence) B7F8C6,Q10Q55 B7F8C6_ORYSJ,Q10Q55_ORYSJ Os10g0337600 OsJ_31121 OSNPB_100337600,LOC_Os03g11100 Os03g0209400 OsJ_09864 OSNPB_030209400 ENOG411E35R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1195) Os07g0607500 protein Q69J28 Q69J28_ORYSJ Os07g0607500 OsJ_25063 OSJNBa0072I06.26 OSNPB_070607500 P0493C06.40 ENOG411E35Q O23029 O23029_ARATH AWPM-19-like family protein (T1G11.19 protein) (Uncharacterized protein At1g04560) 19846 AWPM-19-like family protein (T1G11.19 protein) (Uncharacterized protein At1g04560) integral component of membrane [GO:0016021] locus:2197823; AT1G04560 AWPM-19-like membrane family protein Membrane protein PM19L (PM19-like protein 1) (OsPM19L1),Os07g0422100 protein (Putative plasma membrane associated protein) (cDNA clone:001-118-B01, full insert sequence),AWPM-19-like family protein, expressed (Os10g0464300 protein) Q6L4D2,Q7EY17,Q8H920 PM19L_ORYSJ,Q7EY17_ORYSJ,Q8H920_ORYSJ PM19L PM1 Os05g0381400 LOC_Os05g31670 OSJNBa0088M05.8,B1123E10.128 Os07g0422100 OsJ_24006 OSJNBa0084P08.3 OSNPB_070422100,LOC_Os10g32720 Os10g0464300 OSJNBa0071K18.4 OSNPB_100464300 FUNCTION: May be involved in abiotic stress response through abscisic acid-dependent signaling. {ECO:0000305|PubMed:26505346}. ENOG411E35P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0606700 protein (Salt sensitive 1) (cDNA clone:001-116-G03, full insert sequence) Q6K1Z8 Q6K1Z8_ORYSJ RSS1 Os02g0606700 OSJNBa0030C08.6 OSNPB_020606700 ENOG411E35Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411E35X LBD17,LBD29 Q9SLB6,Q9M2J7 LBD17_ARATH,LBD29_ARATH LOB domain-containing protein 17 (ASYMMETRIC LEAVES 2-like protein 15) (AS2-like protein 15),LOB domain-containing protein 29 (ASYMMETRIC LEAVES 2-like protein 16) (AS2-like protein 16) FUNCTION: Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. 27387,24056 LOB domain-containing protein 17 (ASYMMETRIC LEAVES 2-like protein 15) (AS2-like protein 15),LOB domain-containing protein 29 (ASYMMETRIC LEAVES 2-like protein 16) (AS2-like protein 16) nucleus [GO:0005634]; lateral root formation [GO:0010311] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. locus:2053813;,locus:2085420; AT2G42440,AT3G58190 lob domain-containing protein LOB domain-containing protein CRL1 (Protein ADVENTITIOUS ROOTLESS 1) (OsARL1) (Protein CROWN ROOTLESS 1),Os08g0563400 protein (Putative LOB domain protein 17) Q5UG13,Q6ZBW8 LBD_ORYSJ,Q6ZBW8_ORYSJ CRL1 ARL1 Os03g0149100 LOC_Os03g05510 OSJNBb0050N02.10,Os08g0563400 OsJ_28302 OSNPB_080563400 P0543D10.31 DISRUPTION PHENOTYPE: Defective in adventitious (crown) root formation (PubMed:15829602, PubMed:15960615). Reduced lateral root formation (PubMed:15829602). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. FUNCTION: Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. ENOG411E35G Q8VZ73,A0A1P8AXN0 Q8VZ73_ARATH,A0A1P8AXN0_ARATH Putative RING zinc finger protein (RING/U-box superfamily protein),RING/U-box superfamily protein 34424,31875 Putative RING zinc finger protein (RING/U-box superfamily protein),RING/U-box superfamily protein locus:2064905; AT2G39100 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E35E Q9C5C5 TRL4_ARATH Thioredoxin-like 4, chloroplastic (Lilium-type thioredoxin 3) FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 23011 Thioredoxin-like 4, chloroplastic (Lilium-type thioredoxin 3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2026504; AT1G07700 thioredoxin-like 4 Thioredoxin-like 4, chloroplastic (Lilium-type thioredoxin 3) Q6YTI3 TRL4_ORYSJ Os02g0567100 LOC_Os02g35900 OsJ_07192 P0020D05.18 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411E35B RPL27AA,RPL27AB Q9LPV3,Q9LR33 R27A1_ARATH,R27A2_ARATH Putative 60S ribosomal protein L27a-1,60S ribosomal protein L27a-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 11814,16292 Putative 60S ribosomal protein L27a-1,60S ribosomal protein L27a-2 cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; flower development [GO:0009908]; inflorescence development [GO:0010229]; mature ribosome assembly [GO:0042256]; post-embryonic development [GO:0009791] locus:2010406;,locus:2028080; AT1G12960,AT1G23290 Ribosomal protein L18e/L15 Os07g0613200 protein (Putative 60S ribosomal protein L27a) Q8GSE9 Q8GSE9_ORYSJ P0616D06.101 OJ1003_H02.128 Os07g0613200 OSNPB_070613200 ENOG411E35A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E353 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family NA NA NA NA NA NA NA ENOG411E352 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh Probable calcium-binding protein CML30 (Calmodulin-like protein 30) Q5SND2 CML30_ORYSJ CML30 Os06g0172200 LOC_Os06g07560 OSJNBa0014B15.8 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E351 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os11g0158300 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J023054L05, full insert sequence) Q2RAB2 Q2RAB2_ORYSJ LOC_Os11g05980 Os11g0158300 OsJ_33041 OSNPB_110158300 ENOG411E350 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) NA NA NA NA NA NA NA ENOG411EK5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bromodomain Os03g0306200 protein (Fragment) A0A0P0VXC7 A0A0P0VXC7_ORYSJ Os03g0306200 OSNPB_030306200 ENOG411EK5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os02g0687500 protein A0A0P0VN40 A0A0P0VN40_ORYSJ Os02g0687500 OSNPB_020687500 ENOG411EK5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane Fragile-X-F protein NA NA NA NA NA NA NA ENOG411EK5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DDT domain Os11g0148700 protein (Fragment) Q0IUL9 Q0IUL9_ORYSJ Os11g0148700 OSNPB_110148700 ENOG411EK5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DDT domain NA NA NA NA NA NA NA ENOG411EK5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AT_hook Os01g0858000 protein,Os07g0454400 protein (Fragment),Os02g0307300 protein (Fragment) A0A0P0VAK1,A0A0P0X5Y1,A0A0P0VI45 A0A0P0VAK1_ORYSJ,A0A0P0X5Y1_ORYSJ,A0A0P0VI45_ORYSJ Os01g0858000 OSNPB_010858000,Os07g0454400 OSNPB_070454400,Os02g0307300 OSNPB_020307300 ENOG411EK5B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EK5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF618 Os08g0187700 protein (Putative S-locus protein 4) (cDNA clone:J013073B17, full insert sequence) Q6ZAQ9 Q6ZAQ9_ORYSJ Os08g0187700 OSNPB_080187700 P0020B10.24 ENOG411EK5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF618 NA NA NA NA NA NA NA ENOG411EK58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: kiaa1429 NA NA NA NA NA NA NA ENOG411EK56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411EK55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Methylketone synthase Os01g0934700 protein (Putative pir7b protein) (cDNA clone:J023131L10, full insert sequence) Q5JMQ8 Q5JMQ8_ORYSJ Os01g0934700 OsJ_04671 OSNPB_010934700 P0423A12.38 P0492G09.8 ENOG411E8YD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE203 protein (Os02g0576900 protein),CLE family OsCLE401 protein (Os04g0460050 protein) Q69JW0,A3AUI3 Q69JW0_ORYSJ,A3AUI3_ORYSJ Os02g0576900 OsCLE203 B1342F01.12 OsJ_07247 OSNPB_020576900,OsCLE401 Os04g0460050 OsJ_15053 OSNPB_040460050 ENOG411DVAM Q9LTB9 Q9LTB9_ARATH AT5g47090/K14A3_4 (Coiled-coil protein) 36397 AT5g47090/K14A3_4 (Coiled-coil protein) U2 snRNP [GO:0005686] locus:2152007; AT5G47090 Coiled-coil domain containing protein (DUF2052) Os06g0139700 protein (cDNA clone:001-207-E05, full insert sequence) (cDNA clone:001-208-H07, full insert sequence) (cDNA clone:J033123J23, full insert sequence) Q5VPF3 Q5VPF3_ORYSJ Os06g0139700 OsJ_20060 OSJNBa0041F13.33 OSNPB_060139700 ENOG411DVAN MZF18.6 Q0WMN5,Q9FLV6,F4KFP7,F4KFP8 Y3913_ARATH,Q9FLV6_ARATH,F4KFP7_ARATH,F4KFP8_ARATH Uncharacterized protein At3g49140,Emb|CAB61996.1 (Pentatricopeptide repeat (PPR) superfamily protein),Pentatricopeptide repeat (PPR) superfamily protein 55871,52277,53724,55274 Uncharacterized protein At3g49140,Emb|CAB61996.1 (Pentatricopeptide repeat (PPR) superfamily protein),Pentatricopeptide repeat (PPR) superfamily protein cofactor binding [GO:0048037] locus:2101348;,locus:2178672; AT3G49140,AT5G24060 Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DVAE B4F7N6,F4I6W7 B4F7N6_ARATH,F4I6W7_ARATH At1g70740 (Protein kinase superfamily protein),Protein kinase superfamily protein 47283,47331 At1g70740 (Protein kinase superfamily protein),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2033577; AT1G70740 Cysteine-rich receptor-like protein kinase Os09g0408900 protein (Fragment) A0A0P0XN81 A0A0P0XN81_ORYSJ Os09g0408900 OSNPB_090408900 ENOG411DVAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0034G17.10 protein (Os04g0550700 protein) (cDNA clone:001-208-A05, full insert sequence) Q7XU30 Q7XU30_ORYSJ Os04g0550700 Os04g0550700 OSJNBb0034G17.10 OSNPB_040550700 ENOG411DVAC UMAMIT13 F4IQX1,Q9ZUS1,A0A1P8AYZ0 WTR12_ARATH,WTR13_ARATH,A0A1P8AYZ0_ARATH WAT1-related protein At2g37450,WAT1-related protein At2g37460,WAT1-related protein 36526,41531,28555 WAT1-related protein At2g37450,WAT1-related protein At2g37460,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid export [GO:0032973]; amino acid homeostasis [GO:0080144]; amino acid import [GO:0043090],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2049837;,locus:2049847; AT2G37450,AT2G37460 auxin-induced protein 5NG4-like NA NA NA NA NA NA NA ENOG411DVAX Q94BZ0 Q94BZ0_ARATH At1g50450/F11F12_20 (Saccharopine dehydrogenase) 46560 At1g50450/F11F12_20 (Saccharopine dehydrogenase) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; oxidoreductase activity [GO:0016491] locus:2008041; AT1G50450 Saccharopine dehydrogenase Os11g0140700 protein (Fragment),Os12g0137200 protein A0A0P0XYX8,A0A0N7KSE7,A0A0P0Y6T5 A0A0P0XYX8_ORYSJ,A0A0N7KSE7_ORYSJ,A0A0P0Y6T5_ORYSJ Os11g0140700 OSNPB_110140700,Os12g0137200 OSNPB_120137200 ENOG411DVAZ Q8RWX4 Q8RWX4_ARATH AT4g32250/F10M6_110 (Protein kinase superfamily protein) (Uncharacterized protein At4g32250) 68157 AT4g32250/F10M6_110 (Protein kinase superfamily protein) (Uncharacterized protein At4g32250) chloroplast [GO:0009507]; plastid [GO:0009536]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468] locus:2116545; AT4G32250 E3 ubiquitin-protein ligase Os06g0639500 protein (Protein kinase-like) Q67WD3 Q67WD3_ORYSJ Os06g0639500 Os06g0639500 OsJ_22106 OSNPB_060639500 P0458E02.13 P0523F01.42 ENOG411DVAT LRR-RLK C0LGS3,Q9FGQ5,O22178 Y4372_ARATH,Q9FGQ5_ARATH,O22178_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g37250 (EC 2.7.11.1),At5g67280/K3G17_4 (Leucine-rich repeat receptor-like protein kinase) (Receptor-like kinase) (Receptor-like protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase) 2.7.11.1 84063,82063,84149 Probable LRR receptor-like serine/threonine-protein kinase At4g37250 (EC 2.7.11.1),At5g67280/K3G17_4 (Leucine-rich repeat receptor-like protein kinase) (Receptor-like kinase) (Receptor-like protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2115120;,locus:2157182;,locus:2058598; AT4G37250,AT5G67280,AT2G23300 LRR receptor-like serine threonine-protein kinase Os09g0110100 protein (Putative receptor-like kinase RHG1) (cDNA clone:002-101-H04, full insert sequence),Os06g0638500 protein (Putative receptor-like protein kinase) Q6YW99,Q67WE5 Q6YW99_ORYSJ,Q67WE5_ORYSJ Os09g0110100 Os09g0110100 OSNPB_090110100 P0501E09.43 P0646B04.7,P0523F01.24 Os06g0638500 OSNPB_060638500 ENOG411DVAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1644) Os09g0451800 protein Q67UF1 Q67UF1_ORYSJ Os09g0451800 Os09g0451800 OJ1163_C07.30 OSNPB_090451800 P0488D02.7 ENOG411DVAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family Os12g0427600 protein B9GCW9 B9GCW9_ORYSJ Os12g0427600 OsJ_35920 OSNPB_120427600 ENOG411DVAR PIN6 Q9SQH6,A0A1P8AVV0 PIN6_ARATH,A0A1P8AVV0_ARATH Auxin efflux carrier component 6 (AtPIN6),Auxin efflux carrier component DISRUPTION PHENOTYPE: Enhanced root growth and faster lateral root development (PubMed:23922907). Altered floral morphology and nectar secretion (PubMed:23551385). {ECO:0000269|PubMed:23551385, ECO:0000269|PubMed:23922907}. shorter visible lateral roots at 9 days after germination. The proximal region of each lateral root in the mutant is significantly swollen and often bent. Growth and morphology of the primary root of the puchi mutant is normal. FUNCTION: Component of the intracellular auxin-transport pathway (PubMed:19506555). Regulates auxin transport and auxin homeostasis (PubMed:23922907). Directly involved in the regulation of nectar production (PubMed:23551385). Involved in unfolded protein response (UPR) activation (PubMed:24180465). Involved in the control of vein patterning (PubMed:23437008, PubMed:24304505). Redundantly with PIN8, inhibits the vein-formation-promoting functions of PIN5 (PubMed:26560462). PIN5, PIN6, and PIN8 control vein network geometry, but they are expressed in mutually exclusive domains of leaf vascular cells (PubMed:26560462). {ECO:0000269|PubMed:19506555, ECO:0000269|PubMed:23437008, ECO:0000269|PubMed:23922907, ECO:0000269|PubMed:24180465, ECO:0000269|PubMed:26560462}.,FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000256|RuleBase:RU362108}. 62044,59738 Auxin efflux carrier component 6 (AtPIN6),Auxin efflux carrier component endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; negative regulation of lateral root development [GO:1901332]; root hair elongation [GO:0048767],integral component of membrane [GO:0016021]; auxin-activated signaling pathway [GO:0009734]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Expressed during vein formation (PubMed:23437008). Decreased expression during seedling development (PubMed:23922907). {ECO:0000269|PubMed:23437008, ECO:0000269|PubMed:23922907}. TISSUE SPECIFICITY: Expressed in the vasculature of the primary root, cotyledons, floral stem, sepals and the main transmitting tract of the reproductive silique (PubMed:23922907, PubMed:24487186). Expressed in embryos, shoot meristem, root tip and lateral root meristems (PubMed:23922907). Expressed in the nectaries and the floral organ boundaries of the anthers (PubMed:23551385, PubMed:23922907). Detected in pollen (PubMed:22540348). Expressed in broad subepidermal domains that narrowed to sites of vein formation (PubMed:23437008). Expressed in veins of mature leaves (PubMed:24487186, PubMed:26560462). {ECO:0000269|PubMed:22540348, ECO:0000269|PubMed:23437008, ECO:0000269|PubMed:23551385, ECO:0000269|PubMed:23922907, ECO:0000269|PubMed:24487186, ECO:0000269|PubMed:26560462}. locus:2025312; AT1G77110 auxin efflux carrier component NA NA NA NA NA NA NA ENOG411E8YT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DW11 ''cytochrome P450 Q9SAB7 Q9SAB7_ARATH Cytochrome P450 like protein (Cytochrome P450, family 77, subfamily B, polypeptide 1) (F25C20.25 protein) (Putative cytochrome P450) ARA:AT1G11600-MONOMER; 58042 Cytochrome P450 like protein (Cytochrome P450, family 77, subfamily B, polypeptide 1) (F25C20.25 protein) (Putative cytochrome P450) plasma membrane [GO:0005886]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2027412; AT1G11600 cytochrome P450 Os06g0680700 protein (Putative cytochrome P450) Q653Y4 Q653Y4_ORYSJ Os06g0680700 OSNPB_060680700 P0003H08.35 P0547F09.6 ENOG411DW1K KIN7O,KIN7N,ZCF125 F4J2K4,Q9S7P3,A0A1I9LLG4,B3H7L9 KN7O_ARATH,KN7N_ARATH,A0A1I9LLG4_ARATH,B3H7L9_ARATH Kinesin-like protein KIN-7O,Kinesin-like protein KIN-7N,P-loop containing nucleoside triphosphate hydrolases superfamily protein,Kinesin-like protein R-ATH-6811434;R-ATH-983189; 144758,93149,143332,83170 Kinesin-like protein KIN-7O,Kinesin-like protein KIN-7N,P-loop containing nucleoside triphosphate hydrolases superfamily protein,Kinesin-like protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2076294;,locus:2202862; AT3G10180,AT1G59540 KISc Kinesin-like protein KIN-7L,Kinesin-like protein KIN-7I,Os09g0421166 protein Q2R2P7,B9G3M6,A0A0P0XLR7 KN7L_ORYSJ,KN7I_ORYSJ,A0A0P0XLR7_ORYSJ KIN7L Os11g0552600 LOC_Os11g35090 OsJ_34241,KIN7I Os09g0421200 LOC_Os09g25380 OJ1740_D06.15 OsJ_29398,Os09g0421166 OSNPB_090421166 ENOG411DW1N MCO15.1 F4K3B8,Q683D2 F4K3B8_ARATH,Q683D2_ARATH Rab3 GTPase-activating protein catalytic subunit,Rab3 GTPase-activating protein catalytic subunit (Uncharacterized protein At5g55060) R-ATH-6811436;R-ATH-8876198; 63150,73876 Rab3 GTPase-activating protein catalytic subunit,Rab3 GTPase-activating protein catalytic subunit (Uncharacterized protein At5g55060) GTPase activator activity [GO:0005096],cytoplasm [GO:0005737]; GTPase activator activity [GO:0005096]; positive regulation of GTPase activity [GO:0043547] locus:2161660; AT5G55060 Inherit from KOG: RAB3 GTPase activating protein subunit 1 (Catalytic) Os07g0511000 protein (cDNA clone:J023050A04, full insert sequence) Q6Z4A0 Q6Z4A0_ORYSJ Os07g0511000 Os07g0511000 OsJ_24406 OSNPB_070511000 P0409B11.37 ENOG411E6G6 Q6DBG0 Q6DBG0_ARATH At2g47485 16478 At2g47485 locus:1006230151; AT2G47485 NA NA NA NA NA NA NA NA ENOG411E6G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os03g0648500 protein (Phytocyanin-related) (Plastocyanin-like domain containing protein, expressed) (cDNA clone:002-133-B02, full insert sequence) Q60DI9 Q60DI9_ORYSJ LOC_Os03g44630 Os03g0648500 OsJ_11912 OSNPB_030648500 ENOG411E6GU T5C2_130 Q9M176 Q9M176_ARATH RING/U-box superfamily protein (Uncharacterized protein At3g43430) (Uncharacterized protein T5C2_130) 19001 RING/U-box superfamily protein (Uncharacterized protein At3g43430) (Uncharacterized protein T5C2_130) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2102311; AT3G43430 AT5G20885 (E 2e-076) zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411E6GV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E6GR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0316300 protein A0A0P0WKR2 A0A0P0WKR2_ORYSJ Os05g0316300 OSNPB_050316300 ENOG411E6GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0174100 protein (cDNA clone:J013108I08, full insert sequence) Q5VR10 Q5VR10_ORYSJ Os01g0174100 Os01g0174100 OsJ_00569 OSJNBa0089K24.19 OSNPB_010174100 ENOG411E6GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 11f (OsTIFY11f) (Jasmonate ZIM domain-containing protein 14) (OsJAZ14),Protein TIFY 11e (OsTIFY11e) (Jasmonate ZIM domain-containing protein 13) (OsJAZ13),Os10g0392101 protein Q7XEZ4,Q7XEZ6,A0A0P0XTR0 TI11F_ORYSJ,TI11E_ORYSJ,A0A0P0XTR0_ORYSJ TIFY11F JAZ14 Os10g0391801 LOC_Os10g25250,TIFY11E JAZ13 Os10g0391400 LOC_Os10g25230,Os10g0392101 OSNPB_100392101 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411E6GD LBD9 O82198 LBD9_ARATH LOB domain-containing protein 9 (ASYMMETRIC LEAVES 2-like protein 35) (AS2-like protein 35) 14486 LOB domain-containing protein 9 (ASYMMETRIC LEAVES 2-like protein 35) (AS2-like protein 35) locus:2051990; AT2G19820 Protein of unknown function DUF260 Lateral organ boundaries (LOB) domain protein-like (Os01g0572800 protein),Os01g0573600 protein,Os01g0571500 protein (Fragment) Q8L3S3,A0A0P0V4B5,A0A0N7KD70 Q8L3S3_ORYSJ,A0A0P0V4B5_ORYSJ,A0A0N7KD70_ORYSJ Os01g0572800 B1129G05.32 B1151A10.13 OsJ_02299 OSNPB_010572800,Os01g0573600 OSNPB_010573600,Os01g0571500 OSNPB_010571500 ENOG411E6GE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0502100 protein Q8LNF1 Q8LNF1_ORYSJ Os10g0502100 Os10g0502100 OsJ_32067 OSJNBa0078O01.13 OSNPB_100502100 ENOG411E6GF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os07g0194675 protein (Fragment),Os12g0108350 protein,Os01g0690333 protein (Fragment) A0A0P0X3J2,A0A0P0Y642,A0A0P0V6U1 A0A0P0X3J2_ORYSJ,A0A0P0Y642_ORYSJ,A0A0P0V6U1_ORYSJ Os07g0194675 OSNPB_070194675,Os12g0108350 OSNPB_120108350,Os01g0690333 OSNPB_010690333 ENOG411E6GA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E6GB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryonic protein Os01g0276300 protein (Putative embryonic abundant protein, group 3) (cDNA clone:002-139-H04, full insert sequence),Os01g0758100 protein Q5NBN5,Q5JLS7 Q5NBN5_ORYSJ,Q5JLS7_ORYSJ Os01g0276300 OSNPB_010276300 P0038F12.21,Os01g0758100 B1131G08.9 OsJ_03514 OSNPB_010758100 ENOG411E6GM Q8LC40,Q6IDB8 Q8LC40_ARATH,Q6IDB8_ARATH IGR motif protein (Uncharacterized protein At3g05810) (Uncharacterized protein At3g05810/F10A16_10),At5g26800 (Xaa-pro aminopeptidase P) 12435,12599 IGR motif protein (Uncharacterized protein At3g05810) (Uncharacterized protein At3g05810/F10A16_10),At5g26800 (Xaa-pro aminopeptidase P) aminopeptidase activity [GO:0004177] locus:2074424;,locus:2148493; AT3G05810,AT5G26800 IGR protein motif Os10g0150200 protein,Os01g0299400 protein (cDNA clone:002-133-F06, full insert sequence) B9G7J6,Q5JL41 B9G7J6_ORYSJ,Q5JL41_ORYSJ Os10g0150200 Os10g0150200 OsJ_30741 OSNPB_100150200,Os01g0299400 Os01g0299400 OsJ_01430 OSNPB_010299400 P0487H02.23 P0682B08.1 ENOG411E6GJ ACBP3 Q9STX1,B3H4G6 ACBP3_ARATH,B3H4G6_ARATH Acyl-CoA-binding domain-containing protein 3 (Acyl-CoA binding protein 3),Acyl-CoA-binding domain 3 Delayed leaf senescence in the dark-M. Chye-2010 FUNCTION: Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA. {ECO:0000269|PubMed:16231156}. 39267,39771 Acyl-CoA-binding domain-containing protein 3 (Acyl-CoA binding protein 3),Acyl-CoA-binding domain 3 extracellular space [GO:0005615]; fatty-acyl-CoA binding [GO:0000062]; lipid binding [GO:0008289]; transport [GO:0006810],extracellular region [GO:0005576]; fatty-acyl-CoA binding [GO:0000062]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; fatty acid transport [GO:0015908]; response to absence of light [GO:0009646]; response to bacterium [GO:0009617]; response to hypoxia [GO:0001666] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:15604682}. locus:2135947; AT4G24230 acyl-coa-binding domain 3 NA NA NA NA NA NA NA ENOG411DZAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0488800 protein A0A0P0XPX3 A0A0P0XPX3_ORYSJ Os09g0488800 OSNPB_090488800 ENOG411DZAE F4JJF6 F4JJF6_ARATH Glycosyltransferase (Glycosyltransferase (DUF604)) 55585 Glycosyltransferase (Glycosyltransferase (DUF604)) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2129845; AT4G15240 Protein of unknown function DUF604 Os08g0137300 protein (Putative fringe-related protein) (cDNA clone:J013001G01, full insert sequence) Q6ZJW6 Q6ZJW6_ORYSJ Os08g0137300 OJ1613_G04.24 OSNPB_080137300 ENOG411DZA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC zinc finger domain containing protein S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q10NB6 Q10NB6_ORYSJ LOC_Os03g16790 Os03g0275400 OSNPB_030275400 ENOG411DZA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF593 Os08g0442350 protein (cDNA clone:J023077A20, full insert sequence) (cDNA clone:J023108H11, full insert sequence) Q6Z8S0 Q6Z8S0_ORYSJ Os08g0442350 Os08g0442350 OSNPB_080442350 P0528B09.48 P0708B04.4 ENOG411E5UD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STI NA NA NA NA NA NA NA ENOG411DXPP ATPC1 Q01908 ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic (F-ATPase gamma subunit 1) carries a T-DNA insertion at atpC1 gene encoding the gamma subunit of the plastid AtP synthase complex. Mutants are non-photoautotrophic. They developed pale green cotyledons without primary leaves. Rescued by growing on sucrose-supplemented MS medium. Mutants have high dark fluorescence level and normal steady state fluorescence level during illumination. Mutant chloroplasts are deficient with starch grains have swollen lumen and disordered grana stacks. FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. ARA:GQT-1336-MONOMER; 40911 ATP synthase gamma chain 1, chloroplastic (F-ATPase gamma subunit 1) chloroplast [GO:0009507]; chloroplast ATP synthase complex [GO:0009544]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; thylakoid [GO:0009579]; enzyme regulator activity [GO:0030234]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP biosynthetic process [GO:0006754]; ATP synthesis coupled proton transport [GO:0015986]; photosynthetic electron transport in photosystem II [GO:0009772] locus:2135054; AT4G04640 ATP synthase gamma chain Os07g0513000 protein (Putative ATP synthase gamma chain 1, chloroplast (H(+)-transporting two-sector ATPase/F(1)-ATPase/ATPC1)) (cDNA clone:J013116B21, full insert sequence) Q84NW1 Q84NW1_ORYSJ P0580A11.134 Os07g0513000 OSJNBb0041J06.115 OSNPB_070513000 ENOG411DXPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Lipase-like protein (Os07g0591100 protein),Os12g0581300 protein (Fragment),Os03g0606100 protein Q6ZLH2,Q0IMB2,A0A0P0W0P9 Q6ZLH2_ORYSJ,Q0IMB2_ORYSJ,A0A0P0W0P9_ORYSJ OJ1174_G05.24 Os07g0591100 OSNPB_070591100,Os12g0581300 Os12g0581300 OSNPB_120581300,Os03g0606100 OSNPB_030606100 ENOG411DXPS O04474 O04474_ARATH F5I14.10 (Pectin lyase-like superfamily protein) (Polygalacturonase/pectinase) ARA:AT1G65570-MONOMER; 42718 F5I14.10 (Pectin lyase-like superfamily protein) (Polygalacturonase/pectinase) apoplast [GO:0048046]; plasmodesma [GO:0009506]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; root cap development [GO:0048829] locus:2034131; AT1G65570 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411DXPU FAAH Q7XJJ7 FAAH_ARATH Fatty acid amide hydrolase (EC 3.5.1.99) (N-acylethanolamine amidohydrolase) DISRUPTION PHENOTYPE: No visible phenotype and enhanced sensitivity to growth inhibition induced by exogenous N-actylethanolamine. {ECO:0000269|PubMed:16880402}. Short primary root; Narrow cotyledons; Short hypocotyl-E. Blancaflor-2006 FUNCTION: Degrades bioactive fatty acid amides to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Converts N-actylethanolamine (NAE) to ethanolamine. Can also use oleamide or 2-arachidonylglycerol as substrates, but not indole-3-acetamide, 1-naphtalene-acetamide, nicotinic acid amide or L-asparagine. Might be involved in abscisic acid signaling and plant defense through distinctly different mechanisms not involving the catalytic activity. {ECO:0000269|PubMed:12824167, ECO:0000269|PubMed:16880402, ECO:0000269|PubMed:18643971, ECO:0000269|PubMed:19801664}. ARA:AT5G64440-MONOMER; 3.5.1.99; 3.5.1.99 66079 Fatty acid amide hydrolase (EC 3.5.1.99) (N-acylethanolamine amidohydrolase) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; amidase activity [GO:0004040]; anandamide amidohydrolase activity [GO:0103073]; N-(long-chain-acyl)ethanolamine deacylase activity [GO:0047412]; oleamide hydrolase activity [GO:0102077]; defense response to bacterium [GO:0042742]; N-acylethanolamine metabolic process [GO:0070291] DEVELOPMENTAL STAGE: Up-regulated during seed germination and early postgerminative seedling growth. {ECO:0000269|PubMed:16880402}. TISSUE SPECIFICITY: Expressed in seedlings, flowers, roots, siliques, seeds and leaves. Lower levels in stems. {ECO:0000269|PubMed:16738862, ECO:0000269|PubMed:16880402}. locus:2179371; AT5G64440 glutamyl-tRNA(Gln) amidotransferase subunit Os04g0102700 protein Q0JFH7 Q0JFH7_ORYSJ Os04g0102700 Os04g0102700 OSNPB_040102700 ENOG411DXPV F4IU60 F4IU60_ARATH Zinc ion binding protein 44059 Zinc ion binding protein chromatin [GO:0000785]; chromosome, centromeric region [GO:0000775]; Ctf18 RFC-like complex [GO:0031390]; nucleoplasm [GO:0005654]; maintenance of mitotic sister chromatid cohesion [GO:0034088]; regulation of DNA replication [GO:0006275] locus:2042466; AT2G44580 Sister chromatid cohesion protein Os05g0119600 protein A0A0P0WH84 A0A0P0WH84_ORYSJ Os05g0119600 OSNPB_050119600 ENOG411DXPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase Os02g0740400 protein (Putative proline-rich protein APG) (cDNA clone:J033016K19, full insert sequence),Os02g0740400 protein Q6Z7T3,Q6Z7T2 Q6Z7T3_ORYSJ,Q6Z7T2_ORYSJ P0516G10.12-1 Os02g0740400 OsJ_08324 OSNPB_020740400,P0516G10.12-2 Os02g0740400 OSNPB_020740400 ENOG411DXPY TMN5 F4HW17,A0A1P8AW75 TMN5_ARATH,A0A1P8AW75_ARATH Transmembrane 9 superfamily member 5 (Endomembrane protein 11) (Transmembrane nine protein 5) (AtTMN5),Transmembrane 9 superfamily member 67678,61716 Transmembrane 9 superfamily member 5 (Endomembrane protein 11) (Transmembrane nine protein 5) (AtTMN5),Transmembrane 9 superfamily member endosome membrane [GO:0010008]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; response to nematode [GO:0009624],endosome membrane [GO:0010008]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in the root cap and in giant cells. {ECO:0000269|PubMed:11277426}. locus:2201806; AT1G08350 endomembrane protein 70 family NA NA NA NA NA NA NA ENOG411DXPA Q9C8X4 Q9C8X4_ARATH GrpE protein homolog FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. {ECO:0000256|RuleBase:RU000640}. 31223 GrpE protein homolog chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; adenyl-nucleotide exchange factor activity [GO:0000774]; chaperone binding [GO:0051087]; copper ion binding [GO:0005507]; protein homodimerization activity [GO:0042803]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2035962; AT1G36390 Essential component of the PAM complex a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (By similarity) GrpE protein homolog,Os04g0431100 protein (Fragment) Q7XQP9,A0A0P0WAH6 Q7XQP9_ORYSJ,A0A0P0WAH6_ORYSJ OSJNBa0084A10.6 Os04g0431100 OsJ_14850 OSNPB_040431100,Os04g0431100 OSNPB_040431100 FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. {ECO:0000256|RuleBase:RU000640}. ENOG411DXPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2985) Os01g0825900 protein (cDNA clone:J033029A05, full insert sequence) Q94D92 Q94D92_ORYSJ Os01g0825900 OSNPB_010825900 P0439E11.19 ENOG411DXPD FHY3 Q9LIE5 FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 DISRUPTION PHENOTYPE: Reduced protochlorophyllide levels in darkness and less photobleaching in the light. {ECO:0000269|PubMed:22634759}. Increased red light signaling in the control of deetiolation. Disrupted rhythmicity of central-clock and clock-output gene expression in constant red light. Short hypocotyl and complete loss of circadian rhythms under red light-P. Devlin-2006 FUNCTION: Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. 95996 Protein FAR-RED ELONGATED HYPOCOTYL 3 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; circadian rhythm [GO:0007623]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; response to far red light [GO:0010218]; transcription, DNA-templated [GO:0006351] locus:2090394; AT3G22170 Protein FAR-RED ELONGATED HYPOCOTYL NA NA NA NA NA NA NA ENOG411DXPE CLPF Q67Y99,A0A1P8B2M4,A0A1P8B2M3 CLPF_ARATH,A0A1P8B2M4_ARATH,A0A1P8B2M3_ARATH Clp protease adapter protein ClpF, chloroplastic,UvrB/uvrC motif-containing protein DISRUPTION PHENOTYPE: Reduction by 10 precent of total chlorophyll, with slight increase of chlorophyll a/b ratio and slight decrease of chlorophyll-to-carotenoid ratios. Overaccumulation of ClpS1 protein. {ECO:0000269|PubMed:26419670}. FUNCTION: Clp protease adapter that facilitates CLPS1 recruitment to ClpC chaperones thus forming a binary adapter for selective substrate recognition and delivery to plastid Clp protease system (CLPC). {ECO:0000269|PubMed:26419670}. 37440,29996,30673 Clp protease adapter protein ClpF, chloroplastic,UvrB/uvrC motif-containing protein chloroplast [GO:0009507]; chloroplastic endopeptidase Clp complex [GO:0009840]; DNA binding [GO:0003677],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Slight reduction during senescence. {ECO:0000269|PubMed:26419670}. TISSUE SPECIFICITY: Expressed constitutively in photosynthetic tissues such as leaves, stems and flowers, and, at low levels, in siliques. {ECO:0000269|PubMed:26419670}. locus:2063761; AT2G03390 Hemimethylated DNA-binding protein YccV like Os08g0172200 protein,Os01g0764500 protein Q6YYJ6,A0A0P0V8J6 Q6YYJ6_ORYSJ,A0A0P0V8J6_ORYSJ OJ1590_E05.35-1 Os08g0172200 OSNPB_080172200,Os01g0764500 OSNPB_010764500 ENOG411DXPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase Patatin-like protein 1 (OsPLP1) (EC 3.1.1.-),Patatin (EC 3.1.1.-),Patatin (EC 3.1.1.-) (Fragment) Q84QY3,B9GDN2,A0A0P0YBC3 PLP1_ORYSJ,B9GDN2_ORYSJ,A0A0P0YBC3_ORYSJ PLP1 Os03g0393900 LOC_Os03g27610 OSJNBa0093I13.16,Os12g0551600 OsJ_36436 OSNPB_120551600,Os12g0552200 OSNPB_120552200 FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Hydrolyzes phospholipids as well as galactolipids. May play a role in disease resistance (By similarity). {ECO:0000250}.,FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411DXPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytokinin dehydrogenase Cytokinin dehydrogenase 3 (EC 1.5.99.12) (Cytokinin oxidase 3) (OsCKX3) Q8LNV6 CKX3_ORYSJ CKX3 Os10g0483500 LOC_Os10g34230 OsJ_31929 OsJ_35246 OSJNBa0012L23.33 FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000250}. ENOG411DXPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DXPI QUL2 Q3EC77,Q8GYW9,A0A1P8AZV9 PMT5_ARATH,PMT4_ARATH,A0A1P8AZV9_ARATH Probable methyltransferase PMT5 (EC 2.1.1.-),Probable methyltransferase PMT4 (EC 2.1.1.-),QUASIMODO2 LIKE 2 2.1.1.- 67819,68001,47728 Probable methyltransferase PMT5 (EC 2.1.1.-),Probable methyltransferase PMT4 (EC 2.1.1.-),QUASIMODO2 LIKE 2 endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2063798;,locus:2014789; AT2G03480,AT1G13860 Methyltransferase NA NA NA NA NA NA NA ENOG411DXPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Lipase-like protein (Os07g0642200 protein) (cDNA clone:001-015-G02, full insert sequence) Q8GS76 Q8GS76_ORYSJ P0524G08.122 OJ1003_C06.106 Os07g0642200 OSNPB_070642200 ENOG411DXPK HOS1 Q84JU6,A0A1P8B159 HOS1_ARATH,A0A1P8B159_ARATH E3 ubiquitin-protein ligase HOS1 (EC 2.3.2.27) (Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 1) (RING finger protein HOS1) (RING-type E3 ubiquitin transferase HOS1),Ubiquitin-protein ligase DISRUPTION PHENOTYPE: Early flowering, and insensitivity to ambient temperature and to intermittent cold, but normal responses to vernalization and gibberellic acid. {ECO:0000269|PubMed:22960247}. Early flowering-J. Zhu -2001 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of the transcription factor ICE1. Acts as a negative regulator of cold signaling pathways (PubMed:16702557). Probably involved in recruiting the NUP107-160 subcomplex of the nuclear pore complex to chromatin (Probable). Controls flowering time in response to ambient temperatures (16 and 23 degrees Celsius) and intermittent cold, probably via the regulation of FT and TSF levels (PubMed:22960247). {ECO:0000269|PubMed:16702557, ECO:0000269|PubMed:22960247, ECO:0000305|PubMed:21189294}. MISCELLANEOUS: Loss-of-function mutation (hos1) in the gene shows an early flowering phenotype due to a constitutive vernalization and a reduced freezing tolerance without cold acclimation. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 105229,91397 E3 ubiquitin-protein ligase HOS1 (EC 2.3.2.27) (Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 1) (RING finger protein HOS1) (RING-type E3 ubiquitin transferase HOS1),Ubiquitin-protein ligase cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; negative regulation of transcription, DNA-templated [GO:0045892]; protein ubiquitination [GO:0016567]; regulation of signal transduction [GO:0009966]; response to cold [GO:0009409]; vegetative to reproductive phase transition of meristem [GO:0010228],ligase activity [GO:0016874] TISSUE SPECIFICITY: Ubiquitously expressed with higher levels in leaf vasculature, roots and root tips. {ECO:0000269|PubMed:11297514, ECO:0000269|PubMed:22960247}. locus:2063917; AT2G39810 E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411DXPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DXPN Q9XHZ8 Y1178_ARATH BTB/POZ domain-containing protein At1g21780 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. PATHWAY: Protein modification; protein ubiquitination. 37678 BTB/POZ domain-containing protein At1g21780 Cul3-RING ubiquitin ligase complex [GO:0031463]; cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2036962; AT1G21780 BTB POZ domain-containing protein Os08g0103600 protein (POZ domain protein family-like) (cDNA clone:J013095L15, full insert sequence) Q69U52 Q69U52_ORYSJ Os08g0103600 OSNPB_080103600 P0015C07.32 ENOG411DXP0 KEU Q9C5X3 KEULE_ARATH SNARE-interacting protein KEULE Mutant keule embryos have large multinucleate cells with gapped or incomplete cross walls as well as cell wall stubs that are very similar to those observed upon caffeine inhibition of cytokinesis in plants. Slower cell division. The planes of cell division are often misoriented. keule mutants die as seedlings with large polyploid cells. Embryo and seedling defective-G. Jurgens-2001 FUNCTION: Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation. {ECO:0000269|PubMed:23702595}. R-ATH-114608; 75083 SNARE-interacting protein KEULE cytoskeleton [GO:0005856]; cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein transport [GO:0015031]; vesicle docking involved in exocytosis [GO:0006904] TISSUE SPECIFICITY: Expressed throughout the plant, both in mitotically active and quiescent cells. Enriched in dividing tissues. locus:2034670; AT1G12360 SNARE-interacting protein Probable protein transport Sec1a,Os04g0252400 protein,Os02g0452500 protein Q7XWP3,A0A0P0W7T0,A0A0P0VIN1 SEC1A_ORYSJ,A0A0P0W7T0_ORYSJ,A0A0P0VIN1_ORYSJ Os04g0252400 LOC_Os04g18030 OSJNBa0032B23.7,Os04g0252400 OSNPB_040252400,Os02g0452500 OSNPB_020452500 FUNCTION: Involved in the vesicle trafficking. Binds syntaxins (By similarity). {ECO:0000250}. ENOG411DXP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PGAM NA NA NA NA NA NA NA ENOG411DXP9 RPL9 P25864 RK9_ARATH 50S ribosomal protein L9, chloroplastic (CL9) FUNCTION: Binds to the 23S rRNA. {ECO:0000250}. 22134 50S ribosomal protein L9, chloroplastic (CL9) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid large ribosomal subunit [GO:0000311]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2082127; AT3G44890 ribosomal protein l9 Os02g0822600 protein (Putative 50S ribosomal protein L9, chloroplast) (cDNA clone:001-014-G04, full insert sequence) (cDNA clone:006-309-C08, full insert sequence) (cDNA clone:J023111I07, full insert sequence) Q6KA00 Q6KA00_ORYSJ OJ1119_A01.23-1 Os02g0822600 OSNPB_020822600 ENOG411DZ8J MYB26 Q9SPG3 MYB26_ARATH Transcription factor MYB26 (Myb-related protein 26) (AtMYB26) (Protein MALE STERILE 35) DISRUPTION PHENOTYPE: Male sterility due to a defect in anther dehiscence. Fertile pollen. {ECO:0000269|PubMed:12753590}. Compared to wild type no secondary thickening or lignification is seen in the anther endothecium although other tissues in the mutant plant undergo normal secondary thickening. As the anther dehydrates the endothecium layer distorts shearing forces do not develop and the anther fails to open.,Male-sterile as a result of a failure of anther dehiscence. Male sterile due to failure of anther dehiscence-H. Saedler-2003 FUNCTION: Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. 41576 Transcription factor MYB26 (Myb-related protein 26) (AtMYB26) (Protein MALE STERILE 35) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; plant-type secondary cell wall biogenesis [GO:0009834]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in anthers early during endothecial development, with maximal expression during pollen mitosis I and bicellular stages. {ECO:0000269|PubMed:17329564}. TISSUE SPECIFICITY: Highly expressed in flowers. {ECO:0000269|PubMed:12753590}. locus:2088187; AT3G13890 transcription factor Os01g0709000 protein Q0JJY3 Q0JJY3_ORYSJ Os01g0709000 Os01g0709000 OSNPB_010709000 ENOG411DZ8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os08g0550600 protein A0A0P0XIF9 A0A0P0XIF9_ORYSJ Os08g0550600 OSNPB_080550600 ENOG411DZ8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DZ8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Leucine zipper protein-like (Os01g0905200 protein) Q5N6V2,Q5N6V3 Q5N6V2_ORYSJ,Q5N6V3_ORYSJ OSJNOa108M02.3-2 Os01g0905200 OSNPB_010905200,Os01g0905200 Os01g0905200 OsJ_04459 OSJNOa108M02.3-1 OSNPB_010905200 ENOG411DZ8N MCK7.24 B9DFZ2,Q94C58 B9DFZ2_ARATH,Q94C58_ARATH AT5G58370 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative GTP-binding protein CGPA) 52451,50644 AT5G58370 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative GTP-binding protein CGPA) cytoplasm [GO:0005737]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787],GTP binding [GO:0005525]; hydrolase activity [GO:0016787] locus:2161243; AT5G58370 50S ribosome-binding GTPase Expressed protein (Os03g0816400 protein) (Putative GTP-binding protein) Q84TX8 Q84TX8_ORYSJ Os03g0816400 LOC_Os03g60180 Os03g0816400 OSJNBa0094J08.26 OSNPB_030816400 ENOG411DZ8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0604900 protein,Os11g0606500 protein (Fragment),Os11g0606900 protein A0A0P0Y4A0,A0A0P0Y452,A0A0P0Y4A3 A0A0P0Y4A0_ORYSJ,A0A0P0Y452_ORYSJ,A0A0P0Y4A3_ORYSJ Os11g0604900 OSNPB_110604900,Os11g0606500 OSNPB_110606500,Os11g0606900 OSNPB_110606900 ENOG411DZ8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein BIG GRAIN 1-like A3C4H3 BIG1L_ORYSJ LOC_Os10g25810 Os10g0397600 OsJ_31430 OSJNBb0058B20.14 FUNCTION: Involved in auxin transport. Regulator of the auxin signaling pathway. {ECO:0000250|UniProtKB:Q10R09}. ENOG411DZ8C ATG7 Q94CD5 ATG7_ARATH Ubiquitin-like modifier-activating enzyme atg7 (ATG12-activating enzyme E1 atg7) (Autophagy-related protein 7) (AtAPG7) (Protein PEROXISOME UNUSUAL POSITIONING 4) DISRUPTION PHENOTYPE: Increased number of peroxisomes and accumulation of peroxisomal proteins. {ECO:0000269|PubMed:24368788}. FUNCTION: E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes. Involved in the senescence process (PubMed:12070171). Involved in the degradation of damaged peroxisomes (PubMed:24368788). Involved in the non-selective degradation of chlorophylls and photosynthetic proteins during stress-induced leaf yellowing (PubMed:24510943). {ECO:0000269|PubMed:12070171, ECO:0000269|PubMed:24368788, ECO:0000269|PubMed:24510943}. R-ATH-1632852;R-ATH-6798695; 76522 Ubiquitin-like modifier-activating enzyme atg7 (ATG12-activating enzyme E1 atg7) (Autophagy-related protein 7) (AtAPG7) (Protein PEROXISOME UNUSUAL POSITIONING 4) cytosol [GO:0005829]; pre-autophagosomal structure [GO:0000407]; Atg12 activating enzyme activity [GO:0019778]; Atg8 activating enzyme activity [GO:0019779]; autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; C-terminal protein lipidation [GO:0006501]; cellular response to nitrogen starvation [GO:0006995]; defense response to fungus [GO:0050832]; late nucleophagy [GO:0044805]; leaf senescence [GO:0010150]; piecemeal microautophagy of nucleus [GO:0034727]; protein lipidation [GO:0006497]; protein transport [GO:0015031] DEVELOPMENTAL STAGE: Up-regulated during leaf senescence. {ECO:0000269|PubMed:12070171}. TISSUE SPECIFICITY: Constitutively expressed (at protein level). {ECO:0000269|PubMed:12070171}. locus:2152375; AT5G45900 ubiquitin-like modifier-activating enzyme Os01g0614900 protein (Ubiquitin-activating enzyme E1-like),Os01g0614900 protein (Fragment) Q5ZDX5,A0A0N7KDB5 Q5ZDX5_ORYSJ,A0A0N7KDB5_ORYSJ P0410E01.41-1 Os01g0614900 OSNPB_010614900,Os01g0614900 OSNPB_010614900 ENOG411DZ8A MUA2.7 Q9FKM1 Q9FKM1_ARATH Hexosyltransferase (EC 2.4.1.-) 2.4.1.- 36962 Hexosyltransferase (EC 2.4.1.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486] locus:2174527; AT5G57500 Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q6K8V8 Q6K8V8_ORYSJ Os02g0785000 Os02g0785000 OJ1715_H01.29 OsJ_08639 OSNPB_020785000 ENOG411DZ8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2419) Queuosine salvage protein,Queuosine salvage protein (Fragment) Q84Z13,A0A0P0X8D0 Q84Z13_ORYSJ,A0A0P0X8D0_ORYSJ OSJNBb0005G07.121-1 Os07g0588800 OsJ_24941 OSNPB_070588800,Os07g0588800 OSNPB_070588800 FUNCTION: Involved in salvaging queuosine. {ECO:0000256|RuleBase:RU365002}. ENOG411DZ8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation_ATPase_N Plasma membrane ATPase (EC 3.6.3.6) Q5SMI5,Q5SMI6 Q5SMI5_ORYSJ,Q5SMI6_ORYSJ Os06g0181500 OSJNBa0035I03.40-2 OSJNBb0019L07.22-2 OSNPB_060181500,Os06g0181500 Os06g0181500 OSJNBa0035I03.40-1 OSJNBb0019L07.22-1 OSNPB_060181500 ENOG411DZ8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 Beta-glucosidase 8 (Os3bglu8) (EC 3.2.1.21),Os03g0703100 protein (Fragment) Q75I94,A0A0P0W1U9,A0A0P0W2H2 BGL08_ORYSJ,A0A0P0W1U9_ORYSJ,A0A0P0W2H2_ORYSJ BGLU8 Os03g0703100 LOC_Os03g49610 OsJ_12263 OSJNBa0004L11.15,Os03g0703100 OSNPB_030703100 FUNCTION: Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-mannoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, cello-oligosaccharides, laminari-oligosaccharides, sophorose and gentiobiose. {ECO:0000269|PubMed:19766588}. ENOG411DZ8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Ankyrin repeat family protein, putative, expressed (Os03g0275300 protein) (cDNA, clone: J100082M05, full insert sequence) Q10NB7 Q10NB7_ORYSJ Os03g0275300 LOC_Os03g16780 OSNPB_030275300 ENOG411DZ8Z MEE18 Q8H0T0,A0A1P8AX45,A0A1P8AXA5,F4IGV3,F4IGV4 Q8H0T0_ARATH,A0A1P8AX45_ARATH,A0A1P8AXA5_ARATH,F4IGV3_ARATH,F4IGV4_ARATH At2g34090 (Maternal effect embryo arrest 18) (Uncharacterized protein At2g34090),Maternal effect embryo arrest 18 48927,55859,52313,51757,53665 At2g34090 (Maternal effect embryo arrest 18) (Uncharacterized protein At2g34090),Maternal effect embryo arrest 18 embryo development ending in seed dormancy [GO:0009793]; pollen tube development [GO:0048868] locus:2055455; AT2G34090 Uncharacterised protein family UPF0052 Os01g0613900 protein (cDNA clone:001-037-G12, full insert sequence),Os01g0613900 protein,Os01g0613900 protein (Fragment) Q5ZDY1,A0A0P0V574,A0A0P0V572 Q5ZDY1_ORYSJ,A0A0P0V574_ORYSJ,A0A0P0V572_ORYSJ P0410E01.34-1 Os01g0613900 OSNPB_010613900,Os01g0613900 OSNPB_010613900 ENOG411DZ8X SRR1 Q8GWZ6 SRR1_ARATH Protein SENSITIVITY TO RED LIGHT REDUCED 1 Altered response to red light-C. Fankhauser-2003 FUNCTION: Probable regulator involved in a circadian clock input pathway, which is required for normal oscillator function. Regulates the expression of clock-regulated genes such as CCA1 and TOC1. Involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways. {ECO:0000269|PubMed:12533513}. 31475 Protein SENSITIVITY TO RED LIGHT REDUCED 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; circadian rhythm [GO:0007623]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; regulation of circadian rhythm [GO:0042752] locus:2148333; AT5G59560 sensitivity to red light reduced Os05g0118000 protein (Unknow protein),Os02g0484390 protein (Fragment) Q5W7C4,A0A0P0VJ47 Q5W7C4_ORYSJ,A0A0P0VJ47_ORYSJ Os05g0118000 Os05g0118000 OSNPB_050118000 P0496H07.19,Os02g0484390 OSNPB_020484390 ENOG411DZ8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein heavy chain N-terminal region 2 NA NA NA NA NA NA NA ENOG411DZ8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prephenate dehydrogenase Os06g0542200 protein (Putative arogenate dehydrogenase isoform 2) (cDNA clone:001-017-G05, full insert sequence) Q5Z6Y1 Q5Z6Y1_ORYSJ Os06g0542200 Os06g0542200 B1068H08.10 OsJ_21611 OSNPB_060542200 ENOG411DZ8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX17 (HD-ZIP protein HOX17) (Homeodomain transcription factor HOX17) (OsHox17) Q0JB92 HOX17_ORYSJ HOX17 Os04g0548700 LOC_Os04g46350 OSJNBa0065H10.13 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DZ8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os02g0114800 protein A0A0P0VDX2 A0A0P0VDX2_ORYSJ Os02g0114800 OSNPB_020114800 ENOG411DZ8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA snf1-related protein kinase Serine/threonine protein kinase OSK4 (OsK4) (EC 2.7.11.1) (SUCROSE NON-FERMENTING-1 related protein kinase 1B) (SNF1-related kinase 1B) (SnRK1B) (Serine/threonine protein kinase OSK24) (OsK24),Serine/threonine protein kinase OSK3 (OsK3) (EC 2.7.11.1) (Serine/threonine protein kinase OSK35) (OsK35) Q852Q1,Q852Q0 OSK4_ORYSJ,OSK3_ORYSJ OSK4 OSK24 SNRK1B LOC_Os08g37800 Os08g0484600 OsJ_27714 OSNPB_080484600 P0419H09.18,OSK3 OSK35 OSK5 LOC_Os03g17980 Os03g0289100 OsJ_10438 OSNPB_030289100 DISRUPTION PHENOTYPE: Normal expression of MYBS1 and AAMY3 in response to glucose levels. Normal seed germination and seedling growth. {ECO:0000269|PubMed:17766403}. FUNCTION: Suppressor of flowering in long days (LD) via the that up-regulation of HD1 and the down-regulation of EHD1. Can phosphorylate HD1 in the presence of HDR1. {ECO:0000269|PubMed:26954091}. ENOG411DZ8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor A-6a (Heat stress transcription factor 1) (OsHsf-01) Q657C0 HFA6B_ORYSJ HSFA6B HSF01 Os01g0571300 LOC_Os01g39020 B1129G05.5 OsJ_002223 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DZ8W Q0V7W6,Q9SK87,Q9SK86,Q9FH04,A0A1P8APV8,A0A1P8APY5,A0A1P8B529 ADHL5_ARATH,ADHL2_ARATH,ADHL1_ARATH,ADHL7_ARATH,A0A1P8APV8_ARATH,A0A1P8APY5_ARATH,A0A1P8B529_ARATH Alcohol dehydrogenase-like 5 (EC 1.1.1.1),Alcohol dehydrogenase-like 2 (EC 1.1.1.1),Alcohol dehydrogenase-like 1 (EC 1.1.1.1),Alcohol dehydrogenase-like 7 (EC 1.1.1.1),GroES-like zinc-binding dehydrogenase family protein ARA:AT4G22110-MONOMER;,ARA:AT1G22440-MONOMER;,ARA:AT1G22430-MONOMER;,ARA:AT5G42250-MONOMER; 1.1.1.1 42518,42383,42529,42568,32269,34224,30236 Alcohol dehydrogenase-like 5 (EC 1.1.1.1),Alcohol dehydrogenase-like 2 (EC 1.1.1.1),Alcohol dehydrogenase-like 1 (EC 1.1.1.1),Alcohol dehydrogenase-like 7 (EC 1.1.1.1),GroES-like zinc-binding dehydrogenase family protein cytoplasm [GO:0005737]; alcohol dehydrogenase (NAD) activity [GO:0004022]; zinc ion binding [GO:0008270],cytosol [GO:0005829]; alcohol dehydrogenase (NAD) activity [GO:0004022]; zinc ion binding [GO:0008270],oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270] locus:2120663;,locus:2009512;,locus:2009522;,locus:2157627; AT4G22110,AT1G22440,AT1G22430,AT5G42250 Alcohol dehydrogenase-like NA NA NA NA NA NA NA ENOG411DZ8T TPT Q9ZSR7 TPT_ARATH Triose phosphate/phosphate translocator TPT, chloroplastic (Protein ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but strong reduction of triose phosphate export from the chloroplast and reduced photosynthetic acclimation. {ECO:0000269|PubMed:12472685, ECO:0000269|PubMed:12586872}. Abnormal photosynthesis acclimation response-P. Horton-2003 FUNCTION: Triose phosphate/phosphate translocator that transports inorganic phosphate, 3-phosphoglycerate (3-PGA) and triose phosphate. Functions in the export of photoassimilates from chloroplasts during the day. In the light, triose phosphates are exported from the chloroplast stroma in counter exchange with inorganic phosphate (Pi), generated during sucrose biosynthesis in the cytosol. Involved in photosynthetic acclimation, a light response resulting in increased tolerance to high-intensity light. {ECO:0000269|PubMed:12472685, ECO:0000269|PubMed:12586872, ECO:0000269|PubMed:20712627}. 44633 Triose phosphate/phosphate translocator TPT, chloroplastic (Protein ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; phosphoglycerate transmembrane transporter activity [GO:0015120]; triose-phosphate transmembrane transporter activity [GO:0071917]; phosphoglycerate transport [GO:0015713]; photosynthetic acclimation [GO:0009643]; triose phosphate transmembrane transport [GO:0035436] TISSUE SPECIFICITY: Expressed in shoots, leaves and flowers. {ECO:0000269|PubMed:11842155, ECO:0000269|PubMed:21175634}. AT5G46110 Triose phosphate phosphate translocator Triose phosphate/phosphate translocator TPT, chloroplastic Q9FTT3 TPT_ORYSJ TPT Os01g0239200 LOC_Os01g13770 OSJNBa0010K01.4 OSJNBa0086P08.33 FUNCTION: Triose phosphate/phosphate translocator that may function in the export of photoassimilates from chloroplasts during the day. {ECO:0000250}. ENOG411DZ8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAT domain Os10g0578000 protein Q0IVD2 Q0IVD2_ORYSJ Os10g0578000 Os10g0578000 OSNPB_100578000 ENOG411DZ88 MMG4.15 Q9FMH1,A0A1P8BFL1 Q9FMH1_ARATH,A0A1P8BFL1_ARATH ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (Similarity to unknown protein),ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 67924,69419 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (Similarity to unknown protein),ARM-repeat/Tetratricopeptide repeat (TPR)-like protein locus:2167796; AT5G43120 NA NA NA NA NA NA NA NA ENOG411DZ89 Q6DR41 Q6DR41_ARATH Transmembrane protein 35217 Transmembrane protein integral component of membrane [GO:0016021] locus:2062678; AT2G41610 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411DZ82 VRN2,FIS2 Q8W5B1,P0DKJ8,F4JMM5,B3H7I2 VRN2_ARATH,FIS2C_ARATH,F4JMM5_ARATH,B3H7I2_ARATH Polycomb group protein VERNALIZATION 2,Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2,VEFS-Box of polycomb protein Altered vernalization response-C. Dean-2001,Initiation of seed development in absence of fertilization; 50% defective seeds-A. Chaudhury-1999 FUNCTION: Polycomb group (PcG) protein. Plays a central role in vernalization by maintaining repressed the homeotic gene FLC, a floral repressor, after a cold treatment. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Associates constitutively along the whole FLC locus. {ECO:0000269|PubMed:11719192, ECO:0000269|PubMed:18854416}.,FUNCTION: Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Required to prevent the proliferation of the central cell by repressing unknown target genes before fertilization. Regulates the anteroposterior organization of the endosperm. {ECO:0000269|PubMed:15151989}. 50624,85396,43677,33690 Polycomb group protein VERNALIZATION 2,Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2,VEFS-Box of polycomb protein chromatin silencing complex [GO:0005677]; nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of gene expression by genetic imprinting [GO:0006349]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634]; metal ion binding [GO:0046872]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed maternally and zygotically. Expressed in the central cell before fertilization, and in the endosperm after fertilization, then decreases before the time of endosperm cellularization but continues in the chalazal cyst. {ECO:0000269|PubMed:10962025}. TISSUE SPECIFICITY: Weakly expressed. Expressed both during, and in the absence of vernalization.,TISSUE SPECIFICITY: Weakly expressed. Expressed in late siliques. {ECO:0000269|PubMed:10962025}. locus:3685330;,locus:2129171; AT4G16845,AT2G35670,AT4G16810 polycomb group protein NA NA NA NA NA NA NA ENOG411DZ83 clpP1 P56772 CLPP1_ARATH Chloroplastic ATP-dependent Clp protease proteolytic subunit 1 (EC 3.4.21.92) (Endopeptidase ClpP1) (pClpP) FUNCTION: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. {ECO:0000255|HAMAP-Rule:MF_00444}. 3.4.21.92; 3.4.21.92 22124 Chloroplastic ATP-dependent Clp protease proteolytic subunit 1 (EC 3.4.21.92) (Endopeptidase ClpP1) (pClpP) chloroplast stroma [GO:0009570]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Mostly expressed in leaves. Also detected in stems, and to a lower extent, in roots (at protein level). {ECO:0000269|PubMed:11982939}. ATCG00670 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) P0C314 CLPP_ORYSJ clpP LOC_Osp1g00590 Nip089 FUNCTION: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. {ECO:0000255|HAMAP-Rule:MF_00444}. ENOG411DZ80 NAC058 Q9LS50 Q9LS50_ARATH NAC domain containing protein 58 35745 NAC domain containing protein 58 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2095007; AT3G18400 NAC domain containing protein 58 No apical meristem, putative, expressed (Os03g0624600 protein) (Putative OsNAC1 protein) (cDNA clone:001-105-G11, full insert sequence) Q75LG2 Q75LG2_ORYSJ Os03g0624600 LOC_Os03g42630 Os03g0624600 OsJ_11784 OSJNBb0079B16.7 OSNPB_030624600 ENOG411DZ81 ECH2 Q8VYI3 ECH2_ARATH Enoyl-CoA hydratase 2, peroxisomal (EC 4.2.1.119) FUNCTION: Bidirectional monofunctional enoyl-CoA hydratase 2 involved in the degradation of even cis-unsaturated fatty acids. Devoid of 3-hydroxyacyl-CoA dehydrogenase activity. {ECO:0000269|PubMed:16982622}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. ARA:AT1G76150-MONOMER; R-ATH-193368;R-ATH-2046106;R-ATH-389887;R-ATH-390247; 4.2.1.119; 4.2.1.119 34082 Enoyl-CoA hydratase 2, peroxisomal (EC 4.2.1.119) peroxisome [GO:0005777]; 3R-hydroxyacyl-CoA dehydratase activity [GO:0080023]; oxidoreductase activity [GO:0016491]; fatty acid beta-oxidation, unsaturated, even number [GO:0033542] DEVELOPMENTAL STAGE: Expressed in germinating seedlings and senescing leaves. {ECO:0000269|PubMed:16982622}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16982622}. locus:2199767; AT1G76150 Enoyl-CoA hydratase 2 Os09g0544900 protein (cDNA clone:J023108B15, full insert sequence) Q0IZW8 Q0IZW8_ORYSJ Os09g0544900 Os09g0544900 OsJ_17734 OSNPB_090544900 ENOG411DZ86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response to steroid hormone stimulus Probable BRI1 kinase inhibitor 1 (BRI1-KD interacting protein 119),Os09g0459500 protein (Fragment) Q67J19,A0A0P0XMS2 BKI1_ORYSJ,A0A0P0XMS2_ORYSJ BKI1 BIP119 Os09g0459500 LOC_Os09g28550 B1045B05.34 OsJ_29642 OSJNBa0054F02.12,Os09g0459500 OSNPB_090459500 FUNCTION: Negative regulator of brassinosteroid signaling. {ECO:0000250}. ENOG411DZ87 UBC19,UBC20 Q9LJZ5,Q8L7T3 UBC19_ARATH,UBC20_ARATH Ubiquitin-conjugating enzyme E2 19 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 19) (Ubiquitin carrier protein 19),Ubiquitin-conjugating enzyme E2 20 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 20) (Ubiquitin carrier protein 20) FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Part of the anaphase-promoting complex (APC). May have a key function during cell cycle and be involved in cyclin B1 degradation. {ECO:0000269|PubMed:12427990}.,FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:12427990, ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. R-ATH-174184; 2.3.2.23 19999,19792 Ubiquitin-conjugating enzyme E2 19 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 19) (Ubiquitin carrier protein 19),Ubiquitin-conjugating enzyme E2 20 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 20) (Ubiquitin carrier protein 20) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; anaphase-promoting complex-dependent catabolic process [GO:0031145]; cell proliferation [GO:0008283]; protein polyubiquitination [GO:0000209]; regulation of mitotic metaphase/anaphase transition [GO:0030071]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; anaphase-promoting complex-dependent catabolic process [GO:0031145]; cell proliferation [GO:0008283]; protein polyubiquitination [GO:0000209]; regulation of mitotic metaphase/anaphase transition [GO:0030071] DEVELOPMENTAL STAGE: Expressed during the G1-S phases of the cell cycle. {ECO:0000269|PubMed:15970679}.,DEVELOPMENTAL STAGE: Expressed during the G2-M phases of the cell cycle. {ECO:0000269|PubMed:15970679}. TISSUE SPECIFICITY: Expressed in all tissues with cell division activities and in mature leaves. {ECO:0000269|PubMed:12427990}.,TISSUE SPECIFICITY: Expressed in all tissues with cell division activities and in mature leaves. {ECO:0000269|PubMed:12427990, ECO:0000269|PubMed:16339806}. locus:2087620;,locus:2015819; AT3G20060,AT1G50490 ubiquitin-conjugating enzyme Os01g0273100 protein (Putative cyclin-selective ubiquitin carrier protein E2-C) (cDNA clone:001-117-G01, full insert sequence) Q9LIY1 Q9LIY1_ORYSJ Os01g0273100 OsJ_01256 OSNPB_010273100 P0693B08.33 ENOG411DZ84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 9 NA NA NA NA NA NA NA ENOG411DZ85 F18O22_280,NAC044,NAC085 Q9LY80,F4J4R5,A0A1P8BAI4,A0A1P8BAI0,A0A1P8BAI8 Q9LY80_ARATH,F4J4R5_ARATH,A0A1P8BAI4_ARATH,A0A1P8BAI0_ARATH,A0A1P8BAI8_ARATH NAC domain containing protein 85 (Uncharacterized protein F18O22_280),NAC domain containing protein 44,NAC domain containing protein 85 38736,40410,40064,31681,38385 NAC domain containing protein 85 (Uncharacterized protein F18O22_280),NAC domain containing protein 44,NAC domain containing protein 85 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2145743; AT5G14490,AT3G01600 NAC domain-containing protein No apical meristem (NAM)-like protein (Os02g0594800 protein) (cDNA clone:J033107L05, full insert sequence) Q6ZI65 Q6ZI65_ORYSJ Os02g0594800 OJ1126_D09.15 OSNPB_020594800 ENOG411EBZC P93744,Q8RXF2 P93744_ARATH,Q8RXF2_ARATH At2g42030/T6D20.8 (Putative RING zinc finger protein) (RING/U-box superfamily protein),At3g58030 (RING/U-box superfamily protein) (Uncharacterized protein At3g58030) 47428,48703 At2g42030/T6D20.8 (Putative RING zinc finger protein) (RING/U-box superfamily protein),At3g58030 (RING/U-box superfamily protein) (Uncharacterized protein At3g58030) Derlin-1 retrotranslocation complex [GO:0036513]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ER-associated misfolded protein catabolic process [GO:0071712]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2064584;,locus:2095833; AT2G42030,AT3G58030 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EI7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411EJM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0842900 protein,Os01g0843100 protein,Os01g0843400 protein Q5N9X0,Q5N9W8,A0A0P0VAA7 Q5N9X0_ORYSJ,Q5N9W8_ORYSJ,A0A0P0VAA7_ORYSJ P0406G08.22 Os01g0842900 OSNPB_010842900,P0406G08.25 Os01g0843100 OSNPB_010843100,Os01g0843400 OSNPB_010843400 ENOG411EJM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dehydrin NA NA NA NA NA NA NA ENOG411EJM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411EJMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase subunit H NA NA NA NA NA NA NA ENOG411EJMP Q6NKX3 FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 51309 F-box/FBD/LRR-repeat protein At2g04230 locus:2055993; AT2G04230 FBD Os01g0578500 protein (Ribosomal RNA apurinic site specific lyase-like) (SaF-) Q9AWX3 Q9AWX3_ORYSJ SaF- Os01g0578500 OsJ_02330 OSNPB_010578500 P0013G02.19 ENOG411EJMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABA/WDS induced protein NA NA NA NA NA NA NA ENOG411EJMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0493100 protein (cDNA clone:002-149-A09, full insert sequence) (cDNA clone:J023125F02, full insert sequence) Q6Z8T5 Q6Z8T5_ORYSJ Os08g0493100 OSNPB_080493100 P0686H11.22 ENOG411EJMU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EJMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: seed maturation protein PM41 NA NA NA NA NA NA NA ENOG411EJMM EDA12 Q8GYK3,A0A1P8B048 Q8GYK3_ARATH,A0A1P8B048_ARATH Embryo sac development arrest 12 (Uncharacterized protein At2g35950),Embryo sac development arrest 12 26023,29785 Embryo sac development arrest 12 (Uncharacterized protein At2g35950),Embryo sac development arrest 12 megagametogenesis [GO:0009561] locus:2039230; AT2G35950 NA NA NA NA NA NA NA NA ENOG411EJMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411EJMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EJMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os11g0199900 protein A0A0P0XZS4 A0A0P0XZS4_ORYSJ Os11g0199900 OSNPB_110199900 ENOG411E65Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nonspecific lipid-transfer protein NA NA NA NA NA NA NA ENOG411E65Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E65V BHLH120,MIO24.8 Q9FLI0,A0A1P8BH30,A0A1P8BH50,A0A1P8BH39 BH120_ARATH,A0A1P8BH30_ARATH,A0A1P8BH50_ARATH,A0A1P8BH39_ARATH Transcription factor bHLH120 (Basic helix-loop-helix protein 120) (AtbHLH120) (bHLH 120) (Transcription factor EN 4) (bHLH transcription factor bHLH120),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 22995,28920,21369,30546 Transcription factor bHLH120 (Basic helix-loop-helix protein 120) (AtbHLH120) (bHLH 120) (Transcription factor EN 4) (bHLH transcription factor bHLH120),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2165321; AT5G51790 Transcription factor NA NA NA NA NA NA NA ENOG411E65W LOL2 O65426,A0A1P8B8B2 LOL2_ARATH,A0A1P8B8B2_ARATH Protein LOL2 (Protein LSD ONE LIKE 2) (AtLOL2) (Putative zinc finger LOL2),Lsd one like 2 FUNCTION: Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. 17248,16412 Protein LOL2 (Protein LSD ONE LIKE 2) (AtLOL2) (Putative zinc finger LOL2),Lsd one like 2 nucleus [GO:0005634]; response to bacterium [GO:0009617] locus:2119622; AT4G21610 LSD1 zinc finger NA NA NA NA NA NA NA ENOG411E65T Q9FHI0 YDG1_ARATH YDG domain-containing protein At5g47150 36674 YDG domain-containing protein At5g47150 nucleus [GO:0005634]; histone binding [GO:0042393] locus:2151997; AT5G47150 YDG SRA domain-containing protein NA NA NA NA NA NA NA ENOG411EBKD T6H22.4 Q9SGU3 Q9SGU3_ARATH Myb domain protein 72 (Myb-family transcription factor, putative) (T6H22.4 protein) FUNCTION: Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted (PubMed:18088336, PubMed:24278034). Involved in the up-regulation of several biosynthesis genes of secondary metabolites involved in iron uptake under conditions of iron deficiency (PubMed:25138267). Triggers tolerance to nickel (Ni) and zinc (Zn) ions (PubMed:24278034). Required in the roots during early signaling steps of rhizobacteria-mediated (e.g. P.fluorescens WCS417r) and beneficial fungi-mediated (e.g. T.asperellum T34) broad-spectrum induced systemic resistance (ISR) against several pathogens (e.g. P.syringae pv tomato, H.parasitica, P.cucumerina, A.brassicicola and B.cinerea) and implying enhanced callose deposition (PubMed:18218967, PubMed:19121118). Required for the induction of some genes (e.g. BGLU42) upon rhizobacteria-mediated ISR (PubMed:25138267). {ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:18218967, ECO:0000269|PubMed:19121118, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:25138267}. 34107 Myb domain protein 72 (Myb-family transcription factor, putative) (T6H22.4 protein) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; induced systemic resistance, ethylene mediated signaling pathway [GO:0009866]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2011786; AT1G56160 Myb domain protein 72 NA NA NA NA NA NA NA ENOG411EBKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBKF Q9ZW38,Q9SIJ3,O82374,O82394,O82378,O82375,O82379,O82376,O82370,O82373,P0C2F7,Q3ED93,B3H6V0 FBK36_ARATH,FBK32_ARATH,FBK40_ARATH,FB321_ARATH,FBK37_ARATH,FBK39_ARATH,FBLK4_ARATH,FBK38_ARATH,FBK41_ARATH,FK128_ARATH,Y1947_ARATH,Y1946_ARATH,B3H6V0_ARATH F-box/kelch-repeat protein At2g29600,Putative F-box/kelch-repeat protein At2g21680,Putative F-box/kelch-repeat protein At2g29820,Probable F-box protein At2g29610,Putative F-box/kelch-repeat protein At2g29780,Putative F-box/kelch-repeat protein At2g29810,F-box/LRR-repeat/kelch-repeat protein At2g29770,Putative F-box/kelch-repeat protein At2g29800,Putative F-box/kelch-repeat protein At2g29860,F-box/kelch-repeat protein At2g29830,Kelch repeat-containing protein At1g19470,Kelch repeat-containing protein At1g19460,Galactose oxidase/kelch repeat superfamily protein 47492,48782,44142,29523,44532,43524,43924,47688,27326,43283,46540,47185,40604 F-box/kelch-repeat protein At2g29600,Putative F-box/kelch-repeat protein At2g21680,Putative F-box/kelch-repeat protein At2g29820,Probable F-box protein At2g29610,Putative F-box/kelch-repeat protein At2g29780,Putative F-box/kelch-repeat protein At2g29810,F-box/LRR-repeat/kelch-repeat protein At2g29770,Putative F-box/kelch-repeat protein At2g29800,Putative F-box/kelch-repeat protein At2g29860,F-box/kelch-repeat protein At2g29830,Kelch repeat-containing protein At1g19470,Kelch repeat-containing protein At1g19460,Galactose oxidase/kelch repeat superfamily protein locus:2043107;,locus:2049349;,locus:2060578;,locus:2060609;,locus:2060630;,locus:2060620;,locus:2060589;,locus:2060674;,locus:2060573;,locus:2016447;,locus:2016412; AT2G29600,AT2G21680,AT2G29820,AT2G29610,AT2G29780,AT2G29810,AT2G29770,AT2G29800,AT2G29860,AT2G29830,AT1G19470,AT1G19460 Kelch repeat-containing NA NA NA NA NA NA NA ENOG411EBKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodopsin-like GPCR transmembrane domain NA NA NA NA NA NA NA ENOG411E65G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2Fe-2S iron-sulfur cluster binding domain NA NA NA NA NA NA NA ENOG411E65E T5E8_70 Q9FY88 Q9FY88_ARATH Transmembrane protein (Uncharacterized protein At5g09270) (Uncharacterized protein At5g09270/T5E8_70) (Uncharacterized protein T5E8_70) 12595 Transmembrane protein (Uncharacterized protein At5g09270) (Uncharacterized protein At5g09270/T5E8_70) (Uncharacterized protein T5E8_70) integral component of membrane [GO:0016021]; plastid [GO:0009536] locus:2184787; AT5G09270 NA Os01g0861000 protein (Fragment) Q0JHI8 Q0JHI8_ORYSJ Os01g0861000 Os01g0861000 OSNPB_010861000 ENOG411EBKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411EBKC FLA5,FLA3 O49586,Q9ZQ23 FLA5_ARATH,FLA3_ARATH Fasciclin-like arabinogalactan protein 5,Fasciclin-like arabinogalactan protein 3 FUNCTION: May be a cell surface adhesion protein. 29916,29170 Fasciclin-like arabinogalactan protein 5,Fasciclin-like arabinogalactan protein 3 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2128201;,locus:2061107; AT4G31370,AT2G24450 Inherit from euNOG: fasciclin-like arabinogalactan protein NA NA NA NA NA NA NA ENOG411EBKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EBKK F4HYR3,B5TYT3,A0A1P8ANP4,A0A1P8AWL1,A0A1P8AWL2 CSCL6_ARATH,CSCL7_ARATH,A0A1P8ANP4_ARATH,A0A1P8AWL1_ARATH,A0A1P8AWL2_ARATH CSC1-like protein At1g62320,CSC1-like protein At1g11960,ERD (Early-responsive to dehydration stress) family protein FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. 89309,88280,72307,89082,73645 CSC1-like protein At1g62320,CSC1-like protein At1g11960,ERD (Early-responsive to dehydration stress) family protein integral component of membrane [GO:0016021]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ion transport [GO:0006811],integral component of membrane [GO:0016021] locus:2027119;,locus:2008860; AT1G62320,AT1G11960 Domain of unknown function DUF221 Os05g0594700 protein (Putative early-responsive to dehydration stress protein (ERD4)) (cDNA clone:J033048M19, full insert sequence) Q5TKG1 Q5TKG1_ORYSJ Os05g0594700 Os05g0594700 OSJNBa0030I14.5 OSNPB_050594700 ENOG411EBKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBKV TBL30 Q9SEZ9,A0A1P8AXQ9 TBL30_ARATH,A0A1P8AXQ9_ARATH Protein trichome birefringence-like 30,Trichome birefringence-like protein (DUF828) FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 50013,36973 Protein trichome birefringence-like 30,Trichome birefringence-like protein (DUF828) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],integral component of membrane [GO:0016021] locus:2065051; AT2G40160 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411EBKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EBKS ASK4,ASK3 Q9LNT9,Q9SL93 ASK4_ARATH,ASK3_ARATH SKP1-like protein 4 (AtSK4),SKP1-like protein 3 (AtSK3) FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664;R-ATH-983168; 18187,18365 SKP1-like protein 4 (AtSK4),SKP1-like protein 3 (AtSK3) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511] DEVELOPMENTAL STAGE: Detected throughout the inflorescence at a higher level in the inflorescence meristem (IM) than in the young flower. Very strongly expressed in the valve, septum, and developing seed. Also present in pollen grains. {ECO:0000269|PubMed:12970487}.,DEVELOPMENTAL STAGE: In flowers, mostly restricted to sepals and pedicels. {ECO:0000269|PubMed:12970487}. TISSUE SPECIFICITY: Mostly expressed in inflorescence and siliques, and, to a lower extent, in seedlings, roots, and stems. {ECO:0000269|PubMed:12970487}.,TISSUE SPECIFICITY: Highly expressed in siliques. {ECO:0000269|PubMed:12970487}. locus:2198621;,locus:2050281; AT1G20140,AT2G25700 Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1 RBX1 and a F- box protein it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F- box protein. In the SCF complex it serves as an adapter that links the F-box protein to CUL1 (By similarity) NA NA NA NA NA NA NA ENOG411EBKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribulose bisphosphate carboxylase large chain catalytic domain NA NA NA NA NA NA NA ENOG411EBKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E82B BHLH160 F4I8F9,A0A1P8AVG1,A0A1P8AVK0,A0A1P8AVI2 BH160_ARATH,A0A1P8AVG1_ARATH,A0A1P8AVK0_ARATH,A0A1P8AVI2_ARATH Transcription factor bHLH160 (Basic helix-loop-helix protein 160) (AtbHLH160) (bHLH 160) (bHLH transcription factor bHLH160),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 26390,29740,25605,18168 Transcription factor bHLH160 (Basic helix-loop-helix protein 160) (AtbHLH160) (bHLH 160) (bHLH transcription factor bHLH160),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2026291; AT1G71200 HLH NA NA NA NA NA NA NA ENOG411E7G8 GASA9 Q8GWK5 GASA9_ARATH Gibberellin-regulated protein 9 (GAST1 protein homolog 9) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 12939 Gibberellin-regulated protein 9 (GAST1 protein homolog 9) extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740] locus:2199645; AT1G22690 Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411E7G5 Q9M9H2 Q9M9H2_ARATH F14O23.12 (Nucleolar protein) 14505 F14O23.12 (Nucleolar protein) locus:2012976; AT1G71740 NA Os02g0210900 protein A0A0P0VG88 A0A0P0VG88_ORYSJ Os02g0210900 OSNPB_020210900 ENOG411E7GM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF584 domain containing protein Os05g0531100 protein (cDNA clone:002-188-H07, full insert sequence) Q75K56 Q75K56_ORYSJ Os05g0531100 Os05g0531100 OJ1131_E09.14 OsJ_19309 OSJNBa0053E05.3 OSNPB_050531100 ENOG411E7GN F18B3.180 Q9SVK9 Q9SVK9_ARATH At3g50900 (Uncharacterized protein At3g50900/F18B3_180) (Uncharacterized protein F18B3.180) 12923 At3g50900 (Uncharacterized protein At3g50900/F18B3_180) (Uncharacterized protein F18B3.180) locus:2077967; AT3G50900 NA NA NA NA NA NA NA NA ENOG411E7GH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E7GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411E7GX T16K5.140 Q9M2X9 Q9M2X9_ARATH At3g49790 (Carbohydrate-binding protein) (Uncharacterized protein At3g49790) (Uncharacterized protein T16K5.140) 40339 At3g49790 (Carbohydrate-binding protein) (Uncharacterized protein At3g49790) (Uncharacterized protein T16K5.140) locus:2097360; AT3G49790 Inherit from euNOG: Protein PHLOEM protein 2-LIKE NA NA NA NA NA NA NA ENOG411E7GQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7GP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: C2 NA NA NA NA NA NA NA ENOG411DS9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14_3_3 Putative 14-3-3-like protein GF14-H (G-box factor 14-3-3 homolog H),Os11g0609600 protein Q2R1D5,A0A0N7KT73 14338_ORYSJ,A0A0N7KT73_ORYSJ GF14H Os11g0609600 LOC_Os11g39540,Os11g0609600 OSNPB_110609600 FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. {ECO:0000250}. ENOG411DS9D PRL1-IFG Q9SKH2 Y2369_ARATH BTB/POZ domain-containing protein At2g13690 (Protein PRL1-interacting factor G) FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 61386 BTB/POZ domain-containing protein At2g13690 (Protein PRL1-interacting factor G) protein ubiquitination [GO:0016567] locus:2040466; AT2G13690 BTB POZ domain-containing protein At2g13690-like Os04g0278000 protein (cDNA clone:J023042M03, full insert sequence),Os07g0259700 protein (Putative PRLI-interacting factor G) (cDNA clone:J013124I12, full insert sequence) Q0JEG7,Q7F233 Q0JEG7_ORYSJ,Q7F233_ORYSJ Os04g0278000 Os04g0278000 OSNPB_040278000,OJ1354_H07.125 OJ1370_E02.114 Os07g0259700 OSNPB_070259700 ENOG411DS9E UGGT,EBS1 Q0WL80,A0A1P8AVX3 UGGG_ARATH,A0A1P8AVX3_ARATH UDP-glucose:glycoprotein glucosyltransferase (EC 2.4.1.-) (EMS-mutagenized BRI1 suppressor 1) (Protein PRIORITY IN SWEET LIFE 2),EMS-MUTAGENIZED BRI1 SUPPRESSOR 1 DISRUPTION PHENOTYPE: No visible phenotype, but activation of the unfolded protein response. Loss of seedling growth inhibition in response to the pathogen-associated molecular pattern (PAMP) elf18. {ECO:0000269|PubMed:17588517, ECO:0000269|PubMed:19717464, ECO:0000269|PubMed:19763087}. FUNCTION: Recognizes glycoproteins with minor folding defects. Reglucosylates single N-glycans near the misfolded part of the protein, thus providing quality control for protein folding in the endoplasmic reticulum. Reglucosylated proteins are recognized by calreticulin for recycling to the endoplasmic reticulum and refolding or degradation. Required for elongation factor Tu receptor (EFR), but not flagellin-sensing 2 (FLS2) signaling. {ECO:0000269|PubMed:17588517, ECO:0000269|PubMed:19717464, ECO:0000269|PubMed:19763087}. PATHWAY: Protein modification; protein glycosylation. R-ATH-901032; 2.4.1.- 181805,186414 UDP-glucose:glycoprotein glucosyltransferase (EC 2.4.1.-) (EMS-mutagenized BRI1 suppressor 1) (Protein PRIORITY IN SWEET LIFE 2),EMS-MUTAGENIZED BRI1 SUPPRESSOR 1 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; UDP-glucose:glycoprotein glucosyltransferase activity [GO:0003980]; unfolded protein binding [GO:0051082]; 'de novo' posttranslational protein folding [GO:0051084]; anthocyanin-containing compound metabolic process [GO:0046283]; defense response signaling pathway, resistance gene-independent [GO:0010204]; endoplasmic reticulum unfolded protein response [GO:0030968]; ER-associated misfolded protein catabolic process [GO:0071712]; plant-type hypersensitive response [GO:0009626]; protein N-linked glycosylation via asparagine [GO:0018279]; response to salicylic acid [GO:0009751],integral component of membrane [GO:0016021]; UDP-glucose:glycoprotein glucosyltransferase activity [GO:0003980]; protein glycosylation [GO:0006486] locus:2032298; AT1G71220 udp-glucose glycoprotein Os02g0664200 protein (Fragment),Os02g0664100 protein Q0DYW4,A0A0P0VMS9 Q0DYW4_ORYSJ,A0A0P0VMS9_ORYSJ Os02g0664200 Os02g0664200 OSNPB_020664200,Os02g0664100 OSNPB_020664100 ENOG411DS9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin carboxyl-terminal hydrolase Os02g0573400 protein (Putative ubiquitin-specific protease 3 (UBP3)) Q6YXC1 Q6YXC1_ORYSJ Os02g0573400 Os02g0573400 OSJNBb0046L23.12 OSNPB_020573400 ENOG411DS9B ADT2,ADT1,ADT6 Q9SSE7,Q9SA96,Q9SGD6 AROD2_ARATH,AROD1_ARATH,AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 2, chloroplastic (AtADT2) (AtPDT2) (EC 4.2.1.51) (EC 4.2.1.91),Arogenate dehydratase/prephenate dehydratase 1, chloroplastic (AtADT1) (AtPDT1) (EC 4.2.1.51) (EC 4.2.1.91),Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (AtADT6) (AtPDT6) (EC 4.2.1.51) (EC 4.2.1.91) FUNCTION: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine. {ECO:0000269|PubMed:17726025}. PATHWAY: Amino-acid biosynthesis; L-phenylalanine biosynthesis; L-phenylalanine from L-arogenate: step 1/1.; PATHWAY: Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1. ARA:AT3G07630-MONOMER;,ARA:AT1G11790-MONOMER;,ARA:AT1G08250-MONOMER; 4.2.1.91; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 4.2.1.51; 4.2.1.91 42115,43605,44802 Arogenate dehydratase/prephenate dehydratase 2, chloroplastic (AtADT2) (AtPDT2) (EC 4.2.1.51) (EC 4.2.1.91),Arogenate dehydratase/prephenate dehydratase 1, chloroplastic (AtADT1) (AtPDT1) (EC 4.2.1.51) (EC 4.2.1.91),Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (AtADT6) (AtPDT6) (EC 4.2.1.51) (EC 4.2.1.91) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; arogenate dehydratase activity [GO:0047769]; prephenate dehydratase activity [GO:0004664]; L-phenylalanine biosynthetic process [GO:0009094],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; arogenate dehydratase activity [GO:0047769]; L-phenylalanine biosynthetic process [GO:0009094] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Most abundant in leaves and seeds. {ECO:0000269|PubMed:17726025}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17726025}. locus:2091127;,locus:2027332;,locus:2199963; AT3G07630,AT1G11790,AT1G08250 Arogenate dehydratase prephenate dehydratase Arogenate dehydratase (EC 4.2.1.91),OSJNBa0060D06.3 protein (Os04g0652200 protein),Os02g0478525 protein (Prephenate dehydratase-like),Arogenate dehydratase (EC 4.2.1.91) (Fragment),Os06g0670766 protein,Os08g0411000 protein Q0JDF7,Q6Z3Y3,Q650V6,Q10N17,Q650W1,Q7X7Y9,Q6K5R8,A0A0P0VWW4,A0A0P0WZQ8,A0A0P0XFV2 Q0JDF7_ORYSJ,Q6Z3Y3_ORYSJ,Q650V6_ORYSJ,Q10N17_ORYSJ,Q650W1_ORYSJ,Q7X7Y9_ORYSJ,Q6K5R8_ORYSJ,A0A0P0VWW4_ORYSJ,A0A0P0WZQ8_ORYSJ,A0A0P0XFV2_ORYSJ Os04g0406600 Os04g0406600 OSNPB_040406600,Os07g0694600 OSNPB_070694600 P0627E10.13,Os09g0566050 OJ1155_H10.7 OSJNBa0070E11.16 OSNPB_090566050,Os03g0286200 LOC_Os03g17730 Os03g0286200 OSNPB_030286200,Os09g0565700 Os09g0565700 OJ1155_H10.1 OSJNBa0070E11.10 OSNPB_090565700,OSJNBa0060D06.3 Os04g0652200 OSNPB_040652200,Os02g0478525 OsJ_19357 OSNPB_020478525 P0527E02.31,Os03g0286200 OSNPB_030286200,Os06g0670766 OSNPB_060670766,Os08g0411000 OSNPB_080411000 FUNCTION: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine. {ECO:0000256|RuleBase:RU363004}. ENOG411DS9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mate efflux family protein Os10g0190900 protein (Fragment) C7J7Z6 C7J7Z6_ORYSJ Os10g0190900 OSNPB_100190900 ENOG411DS9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR F-box protein-like (Os02g0798900 protein) (cDNA clone:J013169B16, full insert sequence),F-box protein-like (Os02g0798800 protein) Q69QZ1,Q69QZ2 Q69QZ1_ORYSJ,Q69QZ2_ORYSJ Os02g0798900 Os02g0798900 OJ1695_D07.16 OsJ_08738 OSNPB_020798900,OJ1695_D07.14 Os02g0798800 OSNPB_020798800 ENOG411DS94 BPM2,BPM4,BPM1 Q9M8J9,Q9SRV1,Q8L765,A0A1I9LQF8,F4JAT1,A0A1I9LQF9,A0A1I9LQG0 BPM2_ARATH,BPM4_ARATH,BPM1_ARATH,A0A1I9LQF8_ARATH,F4JAT1_ARATH,A0A1I9LQF9_ARATH,A0A1I9LQG0_ARATH BTB/POZ and MATH domain-containing protein 2 (Protein BTB-POZ AND MATH DOMAIN 2) (AtBPM2),BTB/POZ and MATH domain-containing protein 4 (Protein BTB-POZ AND MATH DOMAIN 4) (AtBPM4),BTB/POZ and MATH domain-containing protein 1 (Protein BTB-POZ AND MATH DOMAIN 1) (AtBPM1),BTB-POZ and MATH domain 2 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000269|PubMed:15618422}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5632684; 45159,50998,44729,39319,32534,32778,33233 BTB/POZ and MATH domain-containing protein 2 (Protein BTB-POZ AND MATH DOMAIN 2) (AtBPM2),BTB/POZ and MATH domain-containing protein 4 (Protein BTB-POZ AND MATH DOMAIN 4) (AtBPM4),BTB/POZ and MATH domain-containing protein 1 (Protein BTB-POZ AND MATH DOMAIN 1) (AtBPM1),BTB-POZ and MATH domain 2 nucleus [GO:0005634]; cellular response to salt stress [GO:0071472]; cellular response to water deprivation [GO:0042631]; protein ubiquitination [GO:0016567]; response to osmotic stress [GO:0006970],cytosol [GO:0005829]; cellular response to salt stress [GO:0071472]; cellular response to water deprivation [GO:0042631]; protein ubiquitination [GO:0016567]; response to osmotic stress [GO:0006970],nucleus [GO:0005634]; identical protein binding [GO:0042802]; cellular response to salt stress [GO:0071472]; cellular response to water deprivation [GO:0042631]; protein ubiquitination [GO:0016567]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:19843165}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15618422, ECO:0000269|PubMed:19843165}. locus:2082445;,locus:2079384;,locus:2179599; AT3G06190,AT3G03740,AT5G19000 BTB POZ and MATH domain-containing protein BTB/POZ domain containing protein, expressed (Os03g0792500 protein) (cDNA clone:J013164G10, full insert sequence),Os07g0655300 protein (Putative zinc finger POZ domain protein) (cDNA clone:J033024L05, full insert sequence),Os07g0167200 protein (Putative zinc finger POZ domain protein),Os03g0792500 protein Q10C73,Q8H3E5,Q8LI88,A0A0P0W435 Q10C73_ORYSJ,Q8H3E5_ORYSJ,Q8LI88_ORYSJ,A0A0P0W435_ORYSJ Os03g0792500 LOC_Os03g57854 Os03g0792500 OSNPB_030792500,P0018C07.116 Os07g0655300 OsJ_25406 OSNPB_070655300,OJ1641_C04.126 Os07g0167200 OsJ_23221 OSNPB_070167200,Os03g0792500 OSNPB_030792500 ENOG411DS97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase OSJNBa0011F23.11 protein (Os04g0658700 protein) Q7XN81 Q7XN81_ORYSJ Os04g0658700 OsJ_16478 OSJNBa0011F23.11 OSNPB_040658700 ENOG411DS90 MFP1 Q9LW85 MFP1_ARATH MAR-binding filament-like protein 1 FUNCTION: Binds DNA. Interacts with chromatin via matrix attachment regions (MARs). Likely to participate in nuclear architecture by connecting chromatin with the nuclear matrix and potentially with the nuclear envelope (By similarity). {ECO:0000250}. 81973 MAR-binding filament-like protein 1 chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; nuclear matrix [GO:0016363]; plastid nucleoid [GO:0042646]; DNA binding [GO:0003677] locus:2093462; AT3G16000 MAR-binding filament-like protein Os01g0180300 protein (Putative MAR binding filament-like protein 1) (cDNA clone:J013071N06, full insert sequence),Os05g0180400 protein (Putative MAR binding protein),Os01g0180300 protein (Fragment) Q5VR43,Q5KQK3,A0A0P0UZA7 Q5VR43_ORYSJ,Q5KQK3_ORYSJ,A0A0P0UZA7_ORYSJ Os01g0180300 OJ1174_D05.11 OSNPB_010180300,Os05g0180400 OSNPB_050180400 P0453H11.4,Os01g0180300 OSNPB_010180300 ENOG411DS92 RSH2,RSH3 Q9LVJ3,Q9SYH1 RSH2C_ARATH,RSH3C_ARATH Probable GTP diphosphokinase RSH2, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 2) (AtRSH2) (ppGpp synthetase RSH2),Probable GTP diphosphokinase RSH3, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 3) (AtRSH3) (ppGpp synthetase RSH3) FUNCTION: Possesses ppGpp (guanosine 3'-diphosphate 5'-diphosphate) synthetase activity in vitro and is able to functionally complement E.coli relA mutants. May be involved in a rapid plant ppGpp-mediated response to pathogens and other stresses. {ECO:0000269|PubMed:18535838}. ARA:AT3G14050-MONOMER;,ARA:AT1G54130-MONOMER; 2.7.6.5 79044,79715 Probable GTP diphosphokinase RSH2, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 2) (AtRSH2) (ppGpp synthetase RSH2),Probable GTP diphosphokinase RSH3, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 3) (AtRSH3) (ppGpp synthetase RSH3) chloroplast [GO:0009507]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; GTP diphosphokinase activity [GO:0008728]; kinase activity [GO:0016301]; guanosine tetraphosphate metabolic process [GO:0015969]; response to abscisic acid [GO:0009737]; response to wounding [GO:0009611],chloroplast [GO:0009507]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; GTP diphosphokinase activity [GO:0008728]; kinase activity [GO:0016301]; guanosine tetraphosphate biosynthetic process [GO:0015970]; leaf senescence [GO:0010150]; photosynthesis [GO:0015979] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, shoots, cotyledons, rosette and cauline leaves, stems, petals, sepals, stamens, pistils and siliques. {ECO:0000269|PubMed:18535838}. locus:2088262;,locus:2014335; AT3G14050,AT1G54130 HD domain containing protein Probable GTP diphosphokinase RSH2, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 2) (OsRSH2) (ppGpp synthetase RSH2),Probable GTP diphosphokinase RSH3, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 3) (OsRSH3) (ppGpp synthetase RSH3),Os09g0442600 protein (Fragment) Q7XAP4,Q67UU0,A0A0P0XMC2 RSH2_ORYSJ,RSH3_ORYSJ,A0A0P0XMC2_ORYSJ RSH2 Os08g0457600 LOC_Os08g35620 OsJ_27564 P0493A04.9,RSH3 Os09g0442600 LOC_Os09g27050 P0046G12.25,Os09g0442600 OSNPB_090442600 FUNCTION: Probable ppGpp (guanosine 3'-diphosphate 5'-diphosphate) synthetase that may be involved in a rapid plant ppGpp-mediated response to pathogens and other stresses. {ECO:0000250}. ENOG411DS93 MAG,MEC18.4 Q39147,A0A1I9LNN7 3MG_ARATH,A0A1I9LNN7_ARATH DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase),DNA-3-methyladenine glycosylase (MAG) FUNCTION: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, and 7-methylguanine from the damaged DNA polymer formed by alkylation lesions. {ECO:0000250}. ARA:AT3G12040-MONOMER; R-ATH-110331;R-ATH-110357; 3.2.2.21 28133,22252 DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase),DNA-3-methyladenine glycosylase (MAG) nucleus [GO:0005634]; alkylbase DNA N-glycosylase activity [GO:0003905]; DNA binding [GO:0003677]; DNA-3-methyladenine glycosylase activity [GO:0008725]; DNA-3-methylguanine glycosylase activity [GO:0052822]; DNA-7-methyladenine glycosylase activity [GO:0052821]; DNA-7-methylguanine glycosylase activity [GO:0043916]; base-excision repair [GO:0006284],alkylbase DNA N-glycosylase activity [GO:0003905]; DNA binding [GO:0003677]; base-excision repair [GO:0006284] locus:2088639; AT3G12040 DNA-3-methyladenine Os02g0774500 protein (cDNA clone:002-170-C08, full insert sequence) Q0DX49 Q0DX49_ORYSJ Os02g0774500 Os02g0774500 OSNPB_020774500 ENOG411EB0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EC16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 64 domain NA NA NA NA NA NA NA ENOG411EE0I FOX2,FOX5,FOX3,FOX1,FOX4 Q9FZC5,Q9FZC8,Q9FZC6,Q9FZC4,Q9FZC7 FOX2_ARATH,FOX5_ARATH,FOX3_ARATH,FOX1_ARATH,FOX4_ARATH Berberine bridge enzyme-like 4 (AtBBE-like 4) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX2) (EC 1.-.-.-),Berberine bridge enzyme-like 7 (AtBBE-like 7) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX5) (EC 1.-.-.-),Berberine bridge enzyme-like 5 (AtBBE-like 5) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX3) (EC 1.-.-.-),Berberine bridge enzyme-like 3 (AtBBE-like 3) (EC 1.1.1.-) (FAD-linked oxidoreductase) (EC 1.-.-.-) (Flavin-dependent oxidoreductase FOX1),Berberine bridge enzyme-like 6 (AtBBE-like 6) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX4) (EC 1.-.-.-) DISRUPTION PHENOTYPE: No effect on the levels of ICN metabolites. {ECO:0000269|PubMed:26352477}.,DISRUPTION PHENOTYPE: Three- to fivefold reduction in levels of ICN metabolites and accumulation of indole cyanogenic glycosides. {ECO:0000269|PubMed:26352477}. FUNCTION: Probable flavin-dependent oxidoreductase. {ECO:0000305}.,FUNCTION: Flavin-dependent oxidoreductase involved in the biosynthetic pathway to 4-hydroxyindole-3-carbonyl nitrile (4-OH-ICN), a cyanogenic metabolite required for inducible pathogen defense. Converts indole cyanohydrin into indole-3-carbonyl nitrile (ICN). {ECO:0000269|PubMed:26352477}. ARA:AT1G26390-MONOMER;,ARA:AT1G26420-MONOMER;,ARA:AT1G26400-MONOMER;,ARA:AT1G26380-MONOMER;,ARA:AT1G26410-MONOMER; 1.1.1.-; 1.-.-.- 58948,59217,58736,59818,61485 Berberine bridge enzyme-like 4 (AtBBE-like 4) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX2) (EC 1.-.-.-),Berberine bridge enzyme-like 7 (AtBBE-like 7) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX5) (EC 1.-.-.-),Berberine bridge enzyme-like 5 (AtBBE-like 5) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX3) (EC 1.-.-.-),Berberine bridge enzyme-like 3 (AtBBE-like 3) (EC 1.1.1.-) (FAD-linked oxidoreductase) (EC 1.-.-.-) (Flavin-dependent oxidoreductase FOX1),Berberine bridge enzyme-like 6 (AtBBE-like 6) (EC 1.1.1.-) (Flavin-dependent oxidoreductase FOX4) (EC 1.-.-.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cellular response to hypoxia [GO:0071456],cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cellular response to hypoxia [GO:0071456] locus:2197935;,locus:2198000;,locus:2197920;,locus:2197950;,locus:2197900; AT1G26390,AT1G26420,AT1G26400,AT1G26380,AT1G26410 Berberine and berberine like NA NA NA NA NA NA NA ENOG411EE0B ATPC2 Q01909 ATPG2_ARATH ATP synthase gamma chain 2, chloroplastic (F-ATPase gamma subunit 2) FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. ARA:GQT-686-MONOMER; 42679 ATP synthase gamma chain 2, chloroplastic (F-ATPase gamma subunit 2) chloroplast [GO:0009507]; chloroplast ATP synthase complex [GO:0009544]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; enzyme regulator activity [GO:0030234]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986]; regulation of root morphogenesis [GO:2000067] locus:2036149; AT1G15700 ATP synthase NA NA NA NA NA NA NA ENOG411EE0G T11I11.170 Q9SW42 Q9SW42_ARATH At4g34930 (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein AT4g34930) (Uncharacterized protein T11I11.170) 44340 At4g34930 (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein AT4g34930) (Uncharacterized protein T11I11.170) phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] locus:2116840; AT4G34930 Phosphatidylinositol-specific phospholipase C X domain NA NA NA NA NA NA NA ENOG411EE0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EE0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EE0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E92K Q9C5N0 Q9C5N0_ARATH AT5g02480/T22P11_70 (HSP20-like chaperones superfamily protein) (Uncharacterized protein At5g02480) 56561 AT5g02480/T22P11_70 (HSP20-like chaperones superfamily protein) (Uncharacterized protein At5g02480) locus:2181803; AT5G02480 NA NA NA NA NA NA NA NA ENOG411EAI5 WRKY36 Q9CAR4,A0A1P8AQG7 WRK36_ARATH,A0A1P8AQG7_ARATH Probable WRKY transcription factor 36 (WRKY DNA-binding protein 36),WRKY DNA-binding protein 36 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 43350,36626 Probable WRKY transcription factor 36 (WRKY DNA-binding protein 36),WRKY DNA-binding protein 36 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2196779; AT1G69810 WRKY NA NA NA NA NA NA NA ENOG411EAI7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EAI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain NA NA NA NA NA NA NA ENOG411EAIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Scarecrow-like protein NA NA NA NA NA NA NA ENOG411EAIG MYB10 Q9LTV4,A0A178VK46 Q9LTV4_ARATH,A0A178VK46_ARATH MYB transcription factor (Myb domain protein 10) (Probable MYB-like DNA-binding protein),Myb domain protein 10 FUNCTION: Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}. 27317,21781 MYB transcription factor (Myb domain protein 10) (Probable MYB-like DNA-binding protein),Myb domain protein 10 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357],DNA binding [GO:0003677] locus:2087690; AT3G12820 myb domain protein 10 NA NA NA NA NA NA NA ENOG411EAIF PUB63 Q58FY4,A0A1P8AY69,A0A1P8AY41,A0A1P8AY93 PUB63_ARATH,A0A1P8AY69_ARATH,A0A1P8AY41_ARATH,A0A1P8AY93_ARATH U-box domain-containing protein 63 (EC 2.3.2.27) (Plant U-box protein 63) (RING-type E3 ubiquitin transferase PUB63),RING/U-box superfamily protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 43302,33381,36315,36694 U-box domain-containing protein 63 (EC 2.3.2.27) (Plant U-box protein 63) (RING-type E3 ubiquitin transferase PUB63),RING/U-box superfamily protein ubiquitin-protein transferase activity [GO:0004842] locus:2061823; AT2G40640 NA NA NA NA NA NA NA NA ENOG411EAIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA START domain NA NA NA NA NA NA NA ENOG411EAIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EAIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0138300 protein,Os02g0151400 protein (cDNA clone:J033050N22, full insert sequence),Os02g0136400 protein Q6YXX1,Q67UW3,A0A0P0VEG0 Q6YXX1_ORYSJ,Q67UW3_ORYSJ,A0A0P0VEG0_ORYSJ OSJNBa0026E05.20 Os02g0138300 OSNPB_020138300,Os02g0151400 OsJ_05400 OSJNBa0050G13.25 OSNPB_020151400,Os02g0136400 OSNPB_020136400 ENOG411EAIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0570500 protein (cDNA clone:J023011C07, full insert sequence),Os05g0593800 protein (cDNA clone:001-033-D10, full insert sequence),Os01g0570500 protein (Fragment) Q656Y0,Q6L4R3,A0A0P0V4E1 Q656Y0_ORYSJ,Q6L4R3_ORYSJ,A0A0P0V4E1_ORYSJ B1114B07.27-1 Os01g0570500 OsJ_02280 OSNPB_010570500,Os05g0593800 Os05g0593800 OsJ_19766 OSNPB_050593800 P0663C08.15,Os01g0570500 OSNPB_010570500 ENOG411EAII Q9T031,Q8GXX4,Q9LK86 FBK96_ARATH,FK133_ARATH,FBK71_ARATH F-box/kelch-repeat protein At4g39240,F-box/kelch-repeat protein At4g14905,Putative F-box/kelch-repeat protein At3g27910 42050,41526,43377 F-box/kelch-repeat protein At4g39240,F-box/kelch-repeat protein At4g14905,Putative F-box/kelch-repeat protein At3g27910 locus:2136398;,locus:1005716318; AT4G39240,AT4G14905,AT3G27910 kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EAIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAIJ MGI19.10 Q9FMZ9 Q9FMZ9_ARATH Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein (Similarity to PHD-type zinc finger protein) (Uncharacterized protein At5g63900) 63201 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein (Similarity to PHD-type zinc finger protein) (Uncharacterized protein At5g63900) metal ion binding [GO:0046872]; N-acetyltransferase activity [GO:0008080] locus:2163961; AT5G63900 PHD NA NA NA NA NA NA NA ENOG411EAIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prenyltransferase and squalene oxidase repeat NA NA NA NA NA NA NA ENOG411EAIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAE1/Type III polyketide synthase-like protein NA NA NA NA NA NA NA ENOG411EAIV MAB16.2 Q9LVZ0,F4JBG1 Q9LVZ0_ARATH,F4JBG1_ARATH Emb|CAB88131.1 (Myb/SANT-like DNA-binding domain protein),Myb/SANT-like DNA-binding domain protein 18526,38571 Emb|CAB88131.1 (Myb/SANT-like DNA-binding domain protein),Myb/SANT-like DNA-binding domain protein DNA binding [GO:0003677] locus:2158931;,locus:504955583; AT5G36080,AT3G32904 NA NA NA NA NA NA NA NA ENOG411EAIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EAIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Yip1 domain NA NA NA NA NA NA NA ENOG411EAIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp90 protein Os12g0514500 protein (Fragment) A0A0N7KU41 A0A0N7KU41_ORYSJ Os12g0514500 OSNPB_120514500 ENOG411EAIR O22885,O22879,O22877 O22885_ARATH,O22879_ARATH,O22877_ARATH Protein kinase family protein (Protein kinase superfamily protein) (Uncharacterized protein At2g40500),Protein kinase superfamily protein (Uncharacterized protein At2g40560),At2g40580 (Protein kinase superfamily protein) (Uncharacterized protein At2g40580) 33907,34937,35249 Protein kinase family protein (Protein kinase superfamily protein) (Uncharacterized protein At2g40500),Protein kinase superfamily protein (Uncharacterized protein At2g40560),At2g40580 (Protein kinase superfamily protein) (Uncharacterized protein At2g40580) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2061893;,locus:2061878;,locus:2061848; AT2G40500,AT2G40560,AT2G40580 kinase family NA NA NA NA NA NA NA ENOG411EAIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1295) NA NA NA NA NA NA NA ENOG411EAIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EAIZ Q84WT5,A0A1P8B8F8,F4JJU5 Q84WT5_ARATH,A0A1P8B8F8_ARATH,F4JJU5_ARATH Glycosyl hydrolase superfamily protein (Putative glycosyl hydrolase family 10 protein),Glycosyl hydrolase superfamily protein ARA:AT4G33820-MONOMER; 64941,64947,60444 Glycosyl hydrolase superfamily protein (Putative glycosyl hydrolase family 10 protein),Glycosyl hydrolase superfamily protein hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2118879;,locus:2134293; AT4G33820,AT4G33810 glycosyl hydrolase family 10 protein NA NA NA NA NA NA NA ENOG411DVXR LPA1 Q9SRY4,A0A1P8ANG6 LPA1_ARATH,A0A1P8ANG6_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic,Tetratricopeptide repeat (TPR)-containing protein DISRUPTION PHENOTYPE: Pale-green phenotype and greatly reduced growth. Disturbed thylakoid membrane systems. {ECO:0000269|PubMed:16531500}. The leaves of the mutant are paler than those of the wild type and growth is significantly reduced. The leaf area of the mutant is ~75% lower than that of wild-type plants 26 d after germination.,The mutants have defects in energy transfer within PSII or a partial loss of PSII capacity.,The relative amounts of the PSII core subunits CP47 CP43 D1 and D2 is greatly reduced in the mutant especially the PSII dimer.,Wild-type chloroplasts are larger than those of the mutant and have a larger number of discs per grana stack on average. In addition the wild-type chloroplasts display well-developed membrane systems composed of grana connected by the stroma lamellae but the thylakoid membrane systems in mutant chloroplasts are disturbed and the membrane spacing is not as clear. Pale green leaves; Dwarf-L. Zhang-2006 FUNCTION: Chaperone required for efficient photosystem II (PSII) assembly. Binds to psbA during de novo biogenesis of PSII. {ECO:0000269|PubMed:16531500}. MISCELLANEOUS: Accumulates even in dark-grown seedlings. {ECO:0000305|PubMed:16531500}. 50739,41249 Protein LOW PSII ACCUMULATION 1, chloroplastic,Tetratricopeptide repeat (TPR)-containing protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II oxygen evolving complex assembly [GO:0010270],integral component of membrane [GO:0016021] locus:2024720; AT1G02910 Protein of unknown function (DUF3493) Os01g0358300 protein (cDNA clone:001-009-G10, full insert sequence) Q5ZBW3 Q5ZBW3_ORYSJ Os01g0358300 Os01g0358300 OsJ_01736 OSNPB_010358300 P0514H03.13 ENOG411DVXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os11g0594000 protein (Sugar transporter family protein, expressed),Os05g0396000 protein (Fragment),Os05g0169700 protein Q2R1T1,A0A0P0WM58,A0A0P0WIF1 Q2R1T1_ORYSJ,A0A0P0WM58_ORYSJ,A0A0P0WIF1_ORYSJ Os11g0594000 LOC_Os11g38160 OSNPB_110594000,Os05g0396000 OSNPB_050396000,Os05g0169700 OSNPB_050169700 ENOG411DVXX ATX1,ATX2 Q9C5X4,P0CB22 ATX1_ARATH,ATX2_ARATH Histone-lysine N-methyltransferase ATX1 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 27) (Trithorax-homolog protein 1) (TRX-homolog protein 1),Histone-lysine N-methyltransferase ATX2 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 30) (Trithorax-homolog protein 2) (TRX-homolog protein 2) Petals may vary in size shape and number; sepals are assymetrically placed and folded. Sepals also may lack trichomes and their epidermal cells may lack the typical striated pattern seen in wild-type sepals.,Reduced fertility which probably results from the many reproductive defects observed: gynoecium may lack stigmatic papillae may be curved or aberrantly-shaped; carpels may be partially or completely unfused.,Up to 20% of mutant buds remain closed when the rest of the flowers have initiated seed development. These unopened buds display abnormalities in stamen and gynoecium development. Dwarf; Late flowering-Z. Avramova-2003 FUNCTION: Histone methyltransferase. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Required to maintain the active state of class A (AP1 and AP2), class B (PI and AP3) and class C (AG) floral homeotic genes at early stages of flower development. Regulates floral organ identity and flowering transition. Functions as a receptor for the lipid messenger phosphatidylinositol 5-phosphate (PI5P), which regulates negatively its transcriptional activation activity. {ECO:0000269|PubMed:12699618, ECO:0000269|PubMed:16585509}.,FUNCTION: Histone methyltransferase. {ECO:0000250}. R-ATH-3214841; 2.1.1.43 119711,123287 Histone-lysine N-methyltransferase ATX1 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 27) (Trithorax-homolog protein 1) (TRX-homolog protein 1),Histone-lysine N-methyltransferase ATX2 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 30) (Trithorax-homolog protein 2) (TRX-homolog protein 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872]; phosphatidylinositol-5-phosphate binding [GO:0010314]; transcription regulatory region DNA binding [GO:0044212]; histone H3-K4 methylation [GO:0051568]; intracellular signal transduction [GO:0035556]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; specification of floral organ identity [GO:0010093],nucleus [GO:0005634]; histone methyltransferase activity (H3-K4 specific) [GO:0042800]; metal ion binding [GO:0046872]; histone H3-K4 methylation [GO:0051568]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expression is associated with the initiation of flower organs and ovules. {ECO:0000269|PubMed:12699618}. TISSUE SPECIFICITY: Ubiquitous with higher levels in dividing tissues, including inflorescence meristem and flower primordia. {ECO:0000269|PubMed:11418242, ECO:0000269|PubMed:12699618}.,TISSUE SPECIFICITY: Expressed in roots and flowers and, to a lower extent, in young seedlings. {ECO:0000269|PubMed:11418242}. locus:2065923;,locus:2198743; AT2G31650,AT1G05830 Histone-lysine n-methyltransferase Histone-lysine N-methyltransferase TRX1 (OsTrx1) (EC 2.1.1.43) (Protein SET DOMAIN GROUP 723) (SET family protein 33) (OsSET33) Q6K431 TRX1_ORYSJ TRX1 SDG723 SET Os09g0134500 LOC_Os09g04890 P0406E03.49-1 P0406E03.49-2 DISRUPTION PHENOTYPE: Late-flowering phenotype under long day (LD) conditions. {ECO:0000269|PubMed:24420930}. FUNCTION: Possesses histone H3 methyltransferase activity in vitro (PubMed:24420930). Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Functions as a receptor for the lipid messenger phosphatidylinositol 5-phosphate (PI5P), which regulates negatively its transcriptional activation activity (By similarity). Involved in the regulation of flowering time and floral induction under long day (LD) conditions. Acts as an activator of flowering under LD conditions. May function through binding to EHD3, a repressor of GHD7 (PubMed:24420930). {ECO:0000250|UniProtKB:Q9C5X4, ECO:0000269|PubMed:24420930}. ENOG411E5KJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os02g0689000 protein (cDNA clone:002-188-E05, full insert sequence) Q6ZGZ3 Q6ZGZ3_ORYSJ Os02g0689000 OJ1743_B12.19 OsJ_07982 OSNPB_020689000 ENOG411E5KI BZIP44,bZIP44 C0Z2L5,A8MRG6 BZP44_ARATH,A8MRG6_ARATH bZIP transcription factor 44 (AtbZIP44),Basic leucine-zipper 44 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but seeds have decreased germination speed after imbibition, without affecting overall germination rate. {ECO:0000269|PubMed:23461773}. FUNCTION: Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. 19073,13912 bZIP transcription factor 44 (AtbZIP44),Basic leucine-zipper 44 nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}. locus:2018411; AT1G75390 Ocs element-binding factor NA NA NA NA NA NA NA ENOG411E5KF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ethylene-responsive nuclear protein Expressed protein (Os12g0628200 protein) (Os12g0628300 protein) (cDNA clone:J033094L24, full insert sequence) Q2QLT7 Q2QLT7_ORYSJ Os12g0628300 LOC_Os12g43350 Os12g0628200 OsJ_36951 OSNPB_120628300 ENOG411DVCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY DNA -binding domain DNA-binding protein WRKY3-like (Os01g0624700 protein) (WRKY12) (cDNA clone:002-182-G03, full insert sequence) Q5ZEB2 Q5ZEB2_ORYSJ Os01g0624700 OSNPB_010624700 P0006C01.4 ENOG411E5KS TIM9 Q9XGX9 TIM9_ARATH Mitochondrial import inner membrane translocase subunit TIM9 (Protein EMBRYO DEFECTIVE 2474) Embryo defective; Preglobular / Globular-D. Meinke-2002 FUNCTION: Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space (By similarity). {ECO:0000250}. 10715 Mitochondrial import inner membrane translocase subunit TIM9 (Protein EMBRYO DEFECTIVE 2474) mitochondrial inner membrane protein insertion complex [GO:0042721]; mitochondrial intermembrane space [GO:0005758]; mitochondrial intermembrane space protein transporter complex [GO:0042719]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; protein transporter activity [GO:0008565]; chaperone-mediated protein transport [GO:0072321]; mitochondrion organization [GO:0007005]; protein import into mitochondrial inner membrane [GO:0045039] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2075195; AT3G46560 Mitochondrial import inner membrane translocase subunit Mitochondrial import inner membrane translocase subunit Tim9 Q9XGX7 TIM9_ORYSJ TIM9 Os12g0571200 LOC_Os12g38310 OsJ_36586 FUNCTION: Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space (By similarity). {ECO:0000250}. ENOG411EE5B ALMT14,ALMT11 Q9LS22,Q3E9Z9 ALMTE_ARATH,ALMTB_ARATH Aluminum-activated malate transporter 14 (AtALMT14),Putative aluminum-activated malate transporter 11 (AtALMT11) FUNCTION: Malate transporter. {ECO:0000250}. 60675,17103 Aluminum-activated malate transporter 14 (AtALMT14),Putative aluminum-activated malate transporter 11 (AtALMT11) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; malate transmembrane transporter activity [GO:0015140] locus:2142295;,locus:2129226; AT5G46610,AT4G17585 Aluminium activated malate transporter NA NA NA NA NA NA NA ENOG411DQXH T2J13.110 Q9SMU2 Q9SMU2_ARATH Alpha/beta-Hydrolases superfamily protein (Calmodulin-binding heat-shock-like protein) (Putative calmodulin-binding heat-shock protein) 54813 Alpha/beta-Hydrolases superfamily protein (Calmodulin-binding heat-shock-like protein) (Putative calmodulin-binding heat-shock protein) hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] locus:2101338; AT3G49050 Lipase 3 N-terminal region Os07g0481200 protein (Fragment) Q0D6G7 Q0D6G7_ORYSJ Os07g0481200 Os07g0481200 OSNPB_070481200 ENOG411DQXM RABF2A,RABF2B,ARA7,RHA1 P31582,Q9SN68,A0A1P8B388,A0A1P8B381,A0A1P8BA31 RAF2A_ARATH,RAF2B_ARATH,A0A1P8B388_ARATH,A0A1P8B381_ARATH,A0A1P8BA31_ARATH Ras-related protein RABF2a (AtRABF2a) (Ras-related protein Rab5A) (AtRab5A) (Ras-related protein Rha1),Ras-related protein RABF2b (AtRABF2b) (Ras-related protein Ara-7) (Ras-related protein Rab5B) (AtRab5B),Ras-related small GTP-binding family protein,Ras small GTP-binding family protein FUNCTION: Involved in the trafficking of soluble cargo proteins from the prevacuolar compartment to the central vacuole (PubMed:12724533, PubMed:21899678). Involved in vacuolar transport of storage proteins with EREX as effector. Regulates membrane trafficking to protein storage vacuoles (PSVs). {ECO:0000269|PubMed:12724533, ECO:0000269|PubMed:21899678}.,FUNCTION: Endosomal protein that may be involved in endocytosis (PubMed:16103374). Involved in the trafficking of proteins from prevacuolar compartments (PVCs) to vacuoles (PubMed:23682115, PubMed:24824487). May activate the MON1-CCZ1 complex which acts as guanine nucleotide exchange factors (GEF) for Rab7 protein family, and serves as a link between Rab5 and Rab7 families in PVCs, and mediates PVC maturation (PubMed:24824487). Involved in vacuolar transport of storage proteins with EREX as effector. Regulates membrane trafficking to protein storage vacuoles (PSVs) (PubMed:27288222). {ECO:0000269|PubMed:16103374, ECO:0000269|PubMed:23682115, ECO:0000269|PubMed:24824487, ECO:0000269|PubMed:27288222}. MISCELLANEOUS: Over-expression of the constitutively active GTP-bound mutant of Leu-69 induces the formation of large ring-like structures of 1-2 micrometers in diameter. {ECO:0000269|PubMed:23682115}. R-ATH-6798695;R-ATH-8873719;R-ATH-8876198; 21654,21873,16286,21485,22713 Ras-related protein RABF2a (AtRABF2a) (Ras-related protein Rab5A) (AtRab5A) (Ras-related protein Rha1),Ras-related protein RABF2b (AtRABF2b) (Ras-related protein Ara-7) (Ras-related protein Rab5B) (AtRab5B),Ras-related small GTP-binding family protein,Ras small GTP-binding family protein endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; late endosome membrane [GO:0031902]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],early endosome [GO:0005769]; early endosome membrane [GO:0031901]; endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; multivesicular body membrane [GO:0032585]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; intracellular protein transport [GO:0006886]; late endosome to vacuole transport [GO:0045324]; vacuole organization [GO:0007033],GTP binding [GO:0005525]; GTPase activity [GO:0003924] DEVELOPMENTAL STAGE: Expressed during pollen germination and pollen tube growth. {ECO:0000269|PubMed:18775970}. TISSUE SPECIFICITY: High in stem, root, and inflorescence.,TISSUE SPECIFICITY: Expressed in roots and actively dividing cells. {ECO:0000269|PubMed:11532937}. locus:2153202;,locus:2123010; AT5G45130,AT4G19640 ras-related protein Os06g0687100 protein (cDNA, clone: J075144G02, full insert sequence),Os12g0631100 protein (Ras-related protein RHN1, putative, expressed) (cDNA clone:006-207-E04, full insert sequence),Os03g0666500 protein (Putative small GTP-binding protein) (Ras-related protein RHN1, putative, expressed) (cDNA clone:006-210-B04, full insert sequence) (cDNA clone:J013107F02, full insert sequence) B7F994,Q0ILQ6,Q75HA2 B7F994_ORYSJ,Q0ILQ6_ORYSJ,Q75HA2_ORYSJ Os06g0687100 OsJ_22419 OSNPB_060687100,Os12g0631100 LOC_Os12g43550 Os12g0631100 OSNPB_120631100,LOC_Os03g46390 Os03g0666500 OSJNBa0056E06.11 OSNPB_030666500 ENOG411DQXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein B3 domain-containing protein Os03g0619800,Putative B3 domain-containing protein Os03g0619850,B3 domain-containing protein Os03g0620500,B3 domain-containing protein Os03g0619600,B3 domain-containing protein Os03g0620400,Os03g0620500 protein,Os03g0619850 protein (Fragment),Os03g0619800 protein Q6AV21,Q10GP0,Q851W4,Q6AV22,Q851W5,C7J026,A0A0P0W132,A0A0P0W088 Y3982_ORYSJ,Y3198_ORYSJ,Y3205_ORYSJ,Y3196_ORYSJ,Y3204_ORYSJ,C7J026_ORYSJ,A0A0P0W132_ORYSJ,A0A0P0W088_ORYSJ Os03g0619800 Os03g0619825 LOC_Os03g42240 OsJ_11753 OSJNBa0063J18.21,Os03g0619850 LOC_Os03g42250 OSJNBa0063J18.22 OSJNBb0111B07.1,Os03g0620500 LOC_Os03g42290 OSJNBb0111B07.8,Os03g0619600 LOC_Os03g42230 OsJ_11751 OSJNBa0063J18.20,Os03g0620400 LOC_Os03g42280 OsJ_11757 OSJNBb0111B07.7,Os03g0620500 OSNPB_030620500,Os03g0619850 OSNPB_030619850,Os03g0619800 OSNPB_030619800 ENOG411DQXC OCP3 Q8H0V5 OCP3_ARATH Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 Slow growth; Pale young leaves; Resistant to necrotrophic fungi-P. Vera-2005 FUNCTION: May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. 39112 Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 nucleus [GO:0005634]; DNA binding [GO:0003677]; peroxidase activity [GO:0004601]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to oomycetes [GO:0002229]; induced systemic resistance [GO:0009682]; jasmonic acid mediated signaling pathway [GO:0009867]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of defense response [GO:0031347]; regulation of defense response by callose deposition [GO:2000071]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; response to abscisic acid [GO:0009737]; response to fungus [GO:0009620]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118] locus:2148012; AT5G11270 HOX Os06g0601000 protein (cDNA clone:J023089G15, full insert sequence) Q69XL0 Q69XL0_ORYSJ Os06g0601000 Os06g0601000 OSNPB_060601000 P0457B11.16 P0486H12.3 ENOG411DQXD PCMP-E90 Q9FWA6 PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330, mitochondrial (Mitochondrial editing factor 13) DISRUPTION PHENOTYPE: Retarded growth, reduced size of leaves and length of petioles. {ECO:0000269|PubMed:26048647}. FUNCTION: Involved in C-to-U editing of mitochondrial RNA. Required for RNA editing at 8 sites in 6 different mRNAs in mitochondria. {ECO:0000269|PubMed:26048647}. 101714 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial (Mitochondrial editing factor 13) mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; cytidine to uridine editing [GO:0016554]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2074562; AT3G02330 Pentatricopeptide repeat-containing protein Os10g0558600 protein (Pentatricopeptide, putative, expressed) (Putative PPR repeat protein) Q94LP5 Q94LP5_ORYSJ Os10g0558600 LOC_Os10g40920 OSJNBa0010C11.18 OSNPB_100558600 ENOG411DQXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os03g0313100 protein Q0DSE7 Q0DSE7_ORYSJ Os03g0313100 Os03g0313100 OSNPB_030313100 ENOG411DQXY CYCT1-5,CYCT1-4,CYCT1:5 Q9FKE6,Q8GYM6,F4KD43,A0A1P8B9D0 CCT15_ARATH,CCT14_ARATH,F4KD43_ARATH,A0A1P8B9D0_ARATH Cyclin-T1-5 (CycT1;5) (Protein AtCycT-like1),Cyclin-T1-4 (CycT1;4) (Protein AtCycT-like2),Cyclin family protein R-ATH-674695;R-ATH-6796648; 65187,60710,66487,52624 Cyclin-T1-5 (CycT1;5) (Protein AtCycT-like1),Cyclin-T1-4 (CycT1;4) (Protein AtCycT-like2),Cyclin family protein cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944],cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; leaf development [GO:0048366]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; response to virus [GO:0009615]; trichome morphogenesis [GO:0010090],integral component of membrane [GO:0016021]; protein kinase binding [GO:0019901]; flower development [GO:0009908]; leaf development [GO:0048366]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]; regulation of transcription, DNA-templated [GO:0006355]; regulation of viral process [GO:0050792]; response to virus [GO:0009615]; trichome morphogenesis [GO:0010090] locus:2122975;,locus:2153358; AT5G45190,AT4G19600 K15188 cyclin T Cyclin-T1-3 (CycT1;3),Cyclin-T1-4 (CycT1;4),Os11g0157100 protein (cDNA clone:J013091M21, full insert sequence),Os11g0157100 protein Q2RAC5,Q2QQS5,B7F5V0,A0A0P0XZD6 CCT13_ORYSJ,CCT14_ORYSJ,B7F5V0_ORYSJ,A0A0P0XZD6_ORYSJ CYCT1-3 Os11g0157100 LOC_Os11g05850,CYCT1-1 Os12g0485400 LOC_Os12g30020,Os11g0157100 OSNPB_110157100 ENOG411DQXX OSM34 P50700 OSL3_ARATH Osmotin-like protein OSM34 26633 Osmotin-like protein OSM34 defense response to bacterium, incompatible interaction [GO:0009816]; defense response to fungus, incompatible interaction [GO:0009817]; response to salt stress [GO:0009651] locus:2139777; AT4G11650 thaumatin-like protein Os03g0663500 protein (Fragment),Os03g0661600 protein (Fragment) Q0DPU1,A0A0P0W1B6 Q0DPU1_ORYSJ,A0A0P0W1B6_ORYSJ Os03g0663500 OSNPB_030663500,Os03g0661600 OSNPB_030661600 ENOG411DQXZ CYP23 Q8LDR3,A0A1P8ANQ3 CYP23_ARATH,A0A1P8ANQ3_ARATH Peptidyl-prolyl cis-trans isomerase CYP23 (PPIase CYP23) (EC 5.2.1.8) (Cyclophilin of 23 kDa) (Cyclophilin-23),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 25515,22298 Peptidyl-prolyl cis-trans isomerase CYP23 (PPIase CYP23) (EC 5.2.1.8) (Cyclophilin of 23 kDa) (Cyclophilin-23),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. Lower expression in roots. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2202775; AT1G26940 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q2R1J4 Q2R1J4_ORYSJ Os11g0602900 LOC_Os11g38990 Os11g0602900 OSNPB_110602900 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DQXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0004G23.12 protein (OSJNBb0085F13.7 protein) (Os04g0106500 protein) Q7X907 Q7X907_ORYSJ Os04g0106500 OSJNBb0004G23.12 OSJNBb0085F13.7 OSNPB_040106500 ENOG411DQXU PCMP-H34 Q9LW32 PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial 73766 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:4010713776; AT3G26782 pentatricopeptide repeat-containing protein At3g26782 Os07g0299800 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6YSW0 Q6YSW0_ORYSJ Os07g0299800 Os07g0299800 B1032F05.19 OSNPB_070299800 ENOG411DQXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear transcription factor Y subunit Os08g0193300 protein (Putative N7 protein),Os08g0194000 protein,Os08g0193500 protein,Os08g0193200 protein Q6Z1B6,A0A0P0XCK5,A0A0P0XCR3,A0A0P0XCY3 Q6Z1B6_ORYSJ,A0A0P0XCK5_ORYSJ,A0A0P0XCR3_ORYSJ,A0A0P0XCY3_ORYSJ Os08g0193300 OsJ_26328 OSJNBa0056O06.29 OSNPB_080193300,Os08g0194000 OSNPB_080194000,Os08g0193500 OSNPB_080193500,Os08g0193200 OSNPB_080193200 ENOG411DQXV CIA1 O80990,A0A1P8B6P4,F4JVW1 CIA1_ARATH,A0A1P8B6P4_ARATH,F4JVW1_ARATH Protein CIA1 (Cytosolic iron-sulfur protein assembly 1) (Protein EMBRYO DEFECTIVE 1345),Transducin/WD40 repeat-like superfamily protein,Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:23104832}. Embryo defective; Preglobular-D. Meinke-2002 FUNCTION: Essential component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe/S proteins. {ECO:0000269|PubMed:23104832}.,FUNCTION: Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. {ECO:0000256|HAMAP-Rule:MF_03037}. 39131,31673,36602 Protein CIA1 (Cytosolic iron-sulfur protein assembly 1) (Protein EMBRYO DEFECTIVE 1345),Transducin/WD40 repeat-like superfamily protein,Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog CIA complex [GO:0097361]; nucleus [GO:0005634]; iron-sulfur cluster assembly [GO:0016226],CIA complex [GO:0097361]; iron-sulfur cluster assembly [GO:0016226] locus:2057381;,locus:2123752; AT2G26060,AT4G32990 cytosolic iron-sulfur protein assembly Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog Q6YVM7 Q6YVM7_ORYSJ Os07g0252000 Os07g0252000 OsJ_23730 OSNPB_070252000 P0669H03.7 FUNCTION: Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. {ECO:0000256|HAMAP-Rule:MF_03037}. ENOG411DQX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411E5K6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Diacylglycerol acyltransferase NA NA NA NA NA NA NA ENOG411DQX0 A0A1P8AWF9,F4I795 A0A1P8AWF9_ARATH,F4I795_ARATH Helicase protein with RING/U-box domain-containing protein 99860,94588 Helicase protein with RING/U-box domain-containing protein ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872] locus:2207175; AT1G05120 SNF2 domain-containing protein helicase domain-containing protein RING finger domain-containing protein Os07g0511500 protein,Os07g0511500 protein (Fragment) Q0D646,A0A0P0X6P2 Q0D646_ORYSJ,A0A0P0X6P2_ORYSJ Os07g0511500 Os07g0511500 OSNPB_070511500,Os07g0511500 OSNPB_070511500 ENOG411DQX2 HPR2 Q9CA90 HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 (EC 1.1.1.79) (EC 1.1.1.81) (NAD(P)H-dependent hydroxypyruvate reductase 2) (AtHPR2) (HPR 2) DISRUPTION PHENOTYPE: Elevated levels of hydroxypyruvate and other metabolites in leaves. Under long-day conditions, slightly altered photosynthetic gas exchange. When associated with HPR1 disruption, strong air-sensitivity and dramatic reduction in photosynthetic performance. {ECO:0000269|PubMed:18952776}. FUNCTION: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate. {ECO:0000269|PubMed:18952776, ECO:0000269|PubMed:21205613}. ARA:AT1G79870-MONOMER; R-ATH-389661; 1.1.1.81; Biosynthesis of secondary metabolites (01110),Glycine, serine and threonine metabolism (00260),Glyoxylate and dicarboxylate metabolism (00630),Metabolic pathways (01100) 1.1.1.79; 1.1.1.81 34161 Glyoxylate/hydroxypyruvate reductase A HPR2 (EC 1.1.1.79) (EC 1.1.1.81) (NAD(P)H-dependent hydroxypyruvate reductase 2) (AtHPR2) (HPR 2) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glyoxylate reductase (NADP) activity [GO:0030267]; hydroxypyruvate reductase activity [GO:0016618]; NAD binding [GO:0051287]; oxidative photosynthetic carbon pathway [GO:0009854] locus:2017824; AT1G79870 Glyoxylate Os01g0228600 protein (Putative D-isomer specific 2-hydroxyacid dehydrogenase) (cDNA clone:J033036K01, full insert sequence),Os01g0228600 protein (Putative D-isomer specific 2-hydroxyacid dehydrogenase) (cDNA clone:006-204-B03, full insert sequence) (cDNA clone:J023031I17, full insert sequence) Q5N7Y9,Q8W0A4 Q5N7Y9_ORYSJ,Q8W0A4_ORYSJ P0452F10.23-2 Os01g0228600 OSNPB_010228600,P0452F10.23-1 Os01g0228600 OSNPB_010228600 ENOG411DQX7 CBL P53780,F4J244,A0A1I9LQK6,A0A1I9LQK7 METC_ARATH,F4J244_ARATH,A0A1I9LQK6_ARATH,A0A1I9LQK7_ARATH Cystathionine beta-lyase, chloroplastic (CBL) (EC 4.4.1.8) (Beta-cystathionase) (Cysteine lyase),Cystathionine beta-lyase PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homocysteine from L-cystathionine: step 1/1. ARA:AT3G57050-MONOMER;MetaCyc:AT3G57050-MONOMER; R-ATH-1614558;R-ATH-1614603; 4.4.1.8; 4.4.1.8 50430,41291,44290,41928 Cystathionine beta-lyase, chloroplastic (CBL) (EC 4.4.1.8) (Beta-cystathionase) (Cysteine lyase),Cystathionine beta-lyase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cystathionine beta-lyase activity [GO:0004121]; cystathionine gamma-lyase activity [GO:0004123]; cystathionine gamma-synthase activity [GO:0003962]; pyridoxal phosphate binding [GO:0030170]; cysteine biosynthetic process via cystathionine [GO:0019343]; L-methionine biosynthetic process from L-homoserine via cystathionine [GO:0019279]; transsulfuration [GO:0019346],cystathionine beta-lyase activity [GO:0004121]; pyridoxal phosphate binding [GO:0030170]; 'de novo' L-methionine biosynthetic process [GO:0071266] locus:2080605; AT3G57050 cystathionine beta-lyase Os06g0175800 protein (Putative cystathionine beta-lyase) (cDNA clone:001-202-D09, full insert sequence),Os06g0176900 protein Q9LWJ5,A0A0P0WT28 Q9LWJ5_ORYSJ,A0A0P0WT28_ORYSJ Os06g0175800 Os06g0175800 OSNPB_060175800 P0015E04.18,Os06g0176900 OSNPB_060176900 ENOG411E5K2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os01g0927300 protein (cDNA clone:J033021C11, full insert sequence) Q5JK04 Q5JK04_ORYSJ Os01g0927300 Os01g0927300 OsJ_04623 OSJNBa0093F16.28 OSNPB_010927300 ENOG411DVC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os08g0174300 protein A0A0P0XCD8 A0A0P0XCD8_ORYSJ Os08g0174300 OSNPB_080174300 ENOG411EDJH SQE4 O65403 ERG13_ARATH Squalene epoxidase 4 (AtSQE4) (EC 1.14.14.17) (Squalene monooxygenase 2) (SE 2) FUNCTION: Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway. {ECO:0000250|UniProtKB:Q9SM02}. MISCELLANEOUS: SEQ4 or SEQ5 are unable to complement seq1 mutants. {ECO:0000305|PubMed:17426032}. PATHWAY: Terpene metabolism; lanosterol biosynthesis; lanosterol from farnesyl diphosphate: step 2/3. ARA:AT5G24140-MONOMER; 1.14.13.132; 1.14.14.17 57027 Squalene epoxidase 4 (AtSQE4) (EC 1.14.14.17) (Squalene monooxygenase 2) (SE 2) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506] TISSUE SPECIFICITY: Expressed mainly in seedlings and inflorescences. {ECO:0000269|PubMed:17426032}. locus:2167423; AT5G24140 Squalene epoxidase NA NA NA NA NA NA NA ENOG411EDJF ERF15 Q8VYM0 ERF93_ARATH Ethylene-responsive transcription factor 15 (AtERF15) (Ethylene-responsive element-binding factor 15) (EREBP-15) FUNCTION: May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. 27056 Ethylene-responsive transcription factor 15 (AtERF15) (Ethylene-responsive element-binding factor 15) (EREBP-15) chloroplast [GO:0009507]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2042496; AT2G31230 Transcription factor NA NA NA NA NA NA NA ENOG411EDJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA leucine-rich repeat family protein protein kinase NA NA NA NA NA NA NA ENOG411DXKQ HO2 O48722,A0A1P8B2J8,F4IUM0,F4IUL9 HMOX2_ARATH,A0A1P8B2J8_ARATH,F4IUM0_ARATH,F4IUL9_ARATH Probable inactive heme oxygenase 2, chloroplastic (AtHO2),Heme oxygenase 2 DISRUPTION PHENOTYPE: Slight reduction in plant size and chlorophyll content, and early flowering. {ECO:0000269|PubMed:16428602}. No visible phenotype when grown in the dark.,Develops subtle growth abnormalities: slight early flowering and diminished inhibition of hypocotyl growth under red or far-red light. Pale green; Early flowering; Long hypocotyl growth under red and far-red light-R. Vierstra-2001 FUNCTION: Probable inactive heme oxygenase. Binds protoporphyrin IX, a precursor for both heme and chlorophyll biosynthesis. Plays a minor role in phytochrome assembly and photomorphogenesis. {ECO:0000269|PubMed:16428602, ECO:0000269|PubMed:19860740}. 34902,32971,41164,36749 Probable inactive heme oxygenase 2, chloroplastic (AtHO2),Heme oxygenase 2 chloroplast [GO:0009507]; heme oxygenase (decyclizing) activity [GO:0004392]; heme oxidation [GO:0006788]; photosynthesis [GO:0015979],heme oxygenase (decyclizing) activity [GO:0004392]; heme oxidation [GO:0006788],chloroplast [GO:0009507]; heme oxygenase (decyclizing) activity [GO:0004392]; heme oxidation [GO:0006788]; phytochromobilin biosynthetic process [GO:0010024] TISSUE SPECIFICITY: Widely expressed at low levels. {ECO:0000269|PubMed:16428602}. locus:2066271; AT2G26550 Heme oxygenase 2 Probable inactive heme oxygenase 2, chloroplastic,Os03g0395000 protein (Fragment) Q10K62,A0A0P0VYF2 HMOX2_ORYSJ,A0A0P0VYF2_ORYSJ HO2 Os03g0395000 LOC_Os03g27770 OSJNBa0093I13.32 OSJNBb0004M10.4,Os03g0395000 OSNPB_030395000 FUNCTION: Probable inactive heme oxygenase that may play a role in the regulation of phytochrome assembly and photomorphogenesis. {ECO:0000250}. ENOG411DXKU HIPL1,MYH19.17 Q9SSG3,Q9FLD9,A0A1P8BCV0,F4KFX2 HIPL1_ARATH,Q9FLD9_ARATH,A0A1P8BCV0_ARATH,F4KFX2_ARATH HIPL1 protein,Catalytics (Similarity to hedgehog-interacting protein),Catalytics 75225,74196,63499,75623 HIPL1 protein,Catalytics (Similarity to hedgehog-interacting protein),Catalytics anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; oxidoreductase activity [GO:0016491],catalytic activity [GO:0003824],anchored component of membrane [GO:0031225]; catalytic activity [GO:0003824] locus:2027273;,locus:2178027; AT1G74790,AT5G39970 HIPL1 protein HIPL1 protein, putative, expressed (Os12g0639600 protein) (cDNA clone:J033122D07, full insert sequence),HIPL1 protein, putative, expressed (Os03g0691800 protein) (Putative HIPL1 protein),Os12g0558900 protein,Os12g0639600 protein Q2QLJ8,Q6AV51,A0A0P0YBH4,A0A0P0YCJ7 Q2QLJ8_ORYSJ,Q6AV51_ORYSJ,A0A0P0YBH4_ORYSJ,A0A0P0YCJ7_ORYSJ Os12g0639600 LOC_Os12g44230 Os12g0639600 OSNPB_120639600,LOC_Os03g48540 Os03g0691800 OsJ_12179 OSJNBb0101N11.10 OSNPB_030691800,Os12g0558900 OSNPB_120558900,Os12g0639600 OSNPB_120639600 ENOG411DXKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os10g0548300 protein,Os10g0548300 protein (Fragment) A0A0P0XX95,A0A0P0XWV2 A0A0P0XX95_ORYSJ,A0A0P0XWV2_ORYSJ Os10g0548300 OSNPB_100548300 ENOG411DXKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C Heat shock protein (Os01g0239100 protein) (Putative DnaJ-like protein) Q9FTT4 Q9FTT4_ORYSJ Os01g0239100 OsJ_01048 OSJNBa0010K01.3 OSJNBa0086P08.32 OSNPB_010239100 ENOG411DXKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GRB10 interacting GYF protein NA NA NA NA NA NA NA ENOG411DXKC MUR3 Q7XJ98 MUR3_ARATH Xyloglucan galactosyltransferase MUR3 (EC 2.4.1.-) (Protein KATAMARI) (Protein MURUS 3) (AtMUR3) (Protein SHORT ROOT IN SALT MEDIUM 3) DISRUPTION PHENOTYPE: Stunted growth. {ECO:0000269|PubMed:15863516, ECO:0000269|PubMed:23571490}. Disorganized endomembranes and actin filaments-I. Hara-Nishimura-2005 FUNCTION: Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall (PubMed:12837954). Associates with other xyloglucan-synthesizing enzymes to form multiprotein complexes for xyloglucan synthesis in the Golgi (PubMed:25392066). Interacts with actin and is required for the proper endomembrane organization and for the cell elongation. Not involved in the trafficking from the endoplasmic reticulum to the vacuoles (PubMed:15863516). Involved in salt stress tolerance. Participates in the control of the expression of genes encoding for proteins involved in reactive oxygen species (ROS) detoxification under salt stress. May contribute to the maintenance of the proper organization of actin microfilaments during salt stress-induced ROS production (PubMed:23571490). {ECO:0000269|PubMed:12837954, ECO:0000269|PubMed:15863516, ECO:0000269|PubMed:23571490, ECO:0000269|PubMed:25392066}. ARA:AT2G20370-MONOMER;MetaCyc:AT2G20370-MONOMER; 2.4.1.- 70744 Xyloglucan galactosyltransferase MUR3 (EC 2.4.1.-) (Protein KATAMARI) (Protein MURUS 3) (AtMUR3) (Protein SHORT ROOT IN SALT MEDIUM 3) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of Golgi membrane [GO:0030173]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757]; endomembrane system organization [GO:0010256]; fucose biosynthetic process [GO:0042353]; salicylic acid mediated signaling pathway [GO:0009863]; unidimensional cell growth [GO:0009826]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12837954}. locus:2039002; AT2G20370 xyloglucan galactosyltransferase Xyloglucan galactosyltransferase KATAMARI1 homolog (EC 2.4.1.-),Os03g0144800 protein (Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed) Q8H038,Q10RV6 KATAM_ORYSJ,Q10RV6_ORYSJ Os03g0144800 LOC_Os03g05110 OJ1172F09.5,Os03g0144800 LOC_Os03g05110 Os03g0144800 OsJ_09385 OSNPB_030144800 FUNCTION: Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall. Interacts with actin and is required for the proper endomembrane organization and for the cell elongation (By similarity). {ECO:0000250}. ENOG411DXKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Ethylene-responsive transcription factor 1 (Ethylene-responsive element-binding factor 1) (EREBP-1) (OsEREBP1),EREBP transcription factor (EREBP-like protein) (Os06g0194000 protein) (Putative ethylene responsive element binding factor) (cDNA clone:001-032-E01, full insert sequence) (cDNA clone:J023031B06, full insert sequence) Q6K7E6,Q69Y47 ERF1_ORYSJ,Q69Y47_ORYSJ EREBP1 Os02g0782700 LOC_Os02g54160 OJ1311_D08.9,Os06g0194000 Os06g0194000 OSNPB_060194000 P0648E08.7 P0698A06.33 FUNCTION: Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. ENOG411DXKG Q9FMV0 FBL91_ARATH F-box/LRR-repeat protein At5g63520 58304 F-box/LRR-repeat protein At5g63520 AT5G63520 F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411DXKJ FTSH12 Q9SAJ3,A0A1P8ARD2,A0A1P8ARE4 FTSHC_ARATH,A0A1P8ARD2_ARATH,A0A1P8ARE4_ARATH ATP-dependent zinc metalloprotease FTSH 12, chloroplastic (AtFTSH12) (EC 3.4.24.-),FTSH protease 12 Embryo defective; Globular-D. Meinke-2002 FUNCTION: Probable ATP-dependent zinc metallopeptidase. 3.4.24.B20; 3.4.24.- 115105,113061,109838 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic (AtFTSH12) (EC 3.4.24.-),FTSH protease 12 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; metalloendopeptidase activity [GO:0004222] locus:2206380; AT1G79560 ATP-dependent zinc metalloprotease FTSH 12 NA NA NA NA NA NA NA ENOG411DXKM ASHH1 Q84WW6,A0A1P8AR04,A0A1P8AR14 ASHH1_ARATH,A0A1P8AR04_ARATH,A0A1P8AR14_ARATH Histone-lysine N-methyltransferase ASHH1 (EC 2.1.1.43) (ASH1 homolog 1) (Protein SET DOMAIN GROUP 26),SET domain group 26 DISRUPTION PHENOTYPE: Late flowering. {ECO:0000269|PubMed:25409787}. FUNCTION: Histone methyltransferase involved in regulation of flowering time. Required for the expression of the SOC1/AGL20 gene. Required for histone H3 trimethylation on 'Lys-4' (H3K4me3) at the SOC1 locus. Prevents trimethylation on 'Lys-27' (H3K27me3) at the same locus. {ECO:0000269|PubMed:25409787}. 2.1.1.43 55285,58432,56293 Histone-lysine N-methyltransferase ASHH1 (EC 2.1.1.43) (ASH1 homolog 1) (Protein SET DOMAIN GROUP 26),SET domain group 26 chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; DNA repair [GO:0006281]; flower development [GO:0009908]; histone methylation [GO:0016571]; response to UV-B [GO:0010224]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024] locus:2030131; AT1G76710 Histone-lysine n-methyltransferase Os04g0429100 protein B9FF78 B9FF78_ORYSJ Os04g0429100 OsJ_14832 OSNPB_040429100 ENOG411DXKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr Nitrate-induced NOI protein, expressed (Os03g0848600 protein) (Putative nitrate-induced protein) Q852C9 Q852C9_ORYSJ Os03g0848600 LOC_Os03g63140 Os03g0848600 OsJ_13365 OSJNBb0096M04.100 OSNPB_030848600 ENOG411EDJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411DXK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum Os05g0162500 protein Q0DKH9 Q0DKH9_ORYSJ Os05g0162500 Os05g0162500 OSNPB_050162500 ENOG411DXK0 MSG15.19,MJG14.22,MJG14.20,MJG14.23 Q9FJ83,F4JGH5,A0A1P8BAQ8,F4K5W5,F4K5W4,F4K5W6,F4K5V7,F4IBK4 Q9FJ83_ARATH,F4JGH5_ARATH,A0A1P8BAQ8_ARATH,F4K5W5_ARATH,F4K5W4_ARATH,F4K5W6_ARATH,F4K5V7_ARATH,F4IBK4_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to nonsense-mediated mRNA decay trans-acting factor),P-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop nucleoside triphosphate hydrolase superfamily protein,p-loop containing nucleoside triphosphate hydrolases superfamily protein 76674,76840,47127,95064,77292,51527,72061,120375 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to nonsense-mediated mRNA decay trans-acting factor),P-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop nucleoside triphosphate hydrolase superfamily protein,p-loop containing nucleoside triphosphate hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2173033;,locus:2135472;,locus:2166173;,locus:2166163;,locus:2166183;,locus:2152627;,locus:2018536; AT5G52090,AT4G05540,AT5G37150,AT5G37140,AT5G37160,AT5G37030,AT1G65780 tRNA-splicing endonuclease positive effector-related Os04g0582900 protein (Fragment),Os04g0582600 protein (Fragment),Os02g0684150 protein C7J1S0,A0A0P0WDV7,A0A0P0VN81 C7J1S0_ORYSJ,A0A0P0WDV7_ORYSJ,A0A0P0VN81_ORYSJ Os04g0582900 Os04g0582900 OSNPB_040582900,Os04g0582600 OSNPB_040582600,Os02g0684150 OSNPB_020684150 ENOG411DXK3 F4JN77 F4JN77_ARATH Ankyrin repeat family protein 27176 Ankyrin repeat family protein integral component of membrane [GO:0016021] locus:2123406; AT4G11000 Inherit from euNOG: Embryogenesis transmembrane protein-like Embryogenesis transmembrane protein-like (Os06g0297400 protein) (Os06g0297500 protein) Q5Z6I7 Q5Z6I7_ORYSJ Os06g0297400 Os06g0297500 OsJ_21052 OSJNBa0055N24.32 OSNPB_060297400 ENOG411DXK2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0503100 protein A0A0P0VJA4 A0A0P0VJA4_ORYSJ Os02g0503100 OSNPB_020503100 ENOG411DXK5 MLN1.7 F4K8S5 F4K8S5_ARATH Phosphorelay protein 39044 Phosphorelay protein locus:2167598; AT5G44150 NA Os05g0564000 protein A0A0P0WQA0 A0A0P0WQA0_ORYSJ Os05g0564000 OSNPB_050564000 ENOG411DXK4 CIPK12 Q9SN43 CIPKC_ARATH CBL-interacting serine/threonine-protein kinase 12 (EC 2.7.11.1) (SNF1-related kinase 3.9) (SOS2-like protein kinase PKS8) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 55017 CBL-interacting serine/threonine-protein kinase 12 (EC 2.7.11.1) (SNF1-related kinase 3.9) (SOS2-like protein kinase PKS8) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:11402167}. locus:2124072; AT4G18700 Cbl-interacting protein kinase CBL-interacting protein kinase 19 (EC 2.7.11.1) (OsCIPK19) (OsPK4),CBL-interacting protein kinase 12 (EC 2.7.11.1) (OsCIPK12) (OsPK7) Q68Y49,Q5JLS2 CIPKJ_ORYSJ,CIPKC_ORYSJ CIPK19 Os05g0514200 LOC_Os05g43840 P0022D06.5,CIPK12 Os01g0759400 LOC_Os01g55450 B1131G08.38 P0460E08.9 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}.,FUNCTION: Involved in drought stress tolerance. CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. {ECO:0000269|PubMed:17535819}. ENOG411DXK7 AtG1 Q96326 Q96326_ARATH At3g51790 (Cytochrome C Maturation G1p) (G1p) (Putative transmembrane protein G1p) (Transmembrane protein G1P-related 1) FUNCTION: Heme-binding chaperone that may be involved in cytochrome c maturation in mitochondria. {ECO:0000269|PubMed:11069919}. 28600 At3g51790 (Cytochrome C Maturation G1p) (G1p) (Putative transmembrane protein G1p) (Transmembrane protein G1P-related 1) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; cytochrome c-heme linkage [GO:0018063] locus:2074363; AT3G51790 Cytochrome c-type biogenesis protein Cytochrome c biogenesis protein CcmE family, putative, expressed (Os10g0545800 protein) (Putative cytochrome c-type biogenesis protein) (cDNA clone:J033123A02, full insert sequence) Q9AV33 Q9AV33_ORYSJ Os10g0545800 LOC_Os10g39870 Os10g0545800 OSJNBa0001O14.23 OSNPB_100545800 ENOG411DXK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor TFIIB repeat NA NA NA NA NA NA NA ENOG411DXK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Os05g0353600 protein A0A0P0WL75 A0A0P0WL75_ORYSJ Os05g0353600 OSNPB_050353600 ENOG411E9PF O80623 Y2393_ARATH Probable receptor-like protein kinase At2g39360 (EC 2.7.11.-) 2.7.11.- 91321 Probable receptor-like protein kinase At2g39360 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2039717; AT2G39360 Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411E9PG FPGS3,DFD Q8W035,A0A1I9LRU3,A0A1I9LRU5 FPGS3_ARATH,A0A1I9LRU3_ARATH,A0A1I9LRU5_ARATH Folylpolyglutamate synthase (EC 6.3.2.17) (DHFS-FPGS homolog D) (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase) (Tetrahydrofolate synthase),DHFS-FPGS homolog D DISRUPTION PHENOTYPE: Vegetative phenotype does not differ visually from wild-type. No obvious defects in root development. Polyglutamylated folates still detectable. Has significantly reduced methionine levels compared to wild-type. Combined loss of FPGS3 and FPGS2 results in seedling lethality. Seedlings fail to proceed beyond the expanded cotyledon stage, exhibit an albino phenotype and are unable to thrive beyond germination. Fpgs3 and fpgs1 double mutant exhibits dwarfed leaves, late flowering (approximately 13 days after wild-type), reduced fecundity and delayed senescence. Pollination with fpgs3 and fpgs1 double mutant pollen yields at most one or two seeds per silique compared to the yield of full siliques when wild-type stigmas are pollinated with wild-type pollen. There is a 40% reduction in the total of 5-CH(3)-THF pool in fpgs3 and fpgs1 double mutant leaf tissue. Fpgs3 and fpgs1 double mutants have 70% lower methionine content than wild-type. {ECO:0000269|PubMed:21070407, ECO:0000269|PubMed:21233333}. Low methionine levels-D. DellaPenna-2010 FUNCTION: Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis. {ECO:0000250|UniProtKB:Q05932, ECO:0000269|PubMed:11752472, ECO:0000269|PubMed:21070407}. PATHWAY: Cofactor biosynthesis; tetrahydrofolylpolyglutamate biosynthesis. {ECO:0000250|UniProtKB:Q05932}. ARA:AT3G55630-MONOMER; R-ATH-196757; 6.3.2.17 55167,48662,39798 Folylpolyglutamate synthase (EC 6.3.2.17) (DHFS-FPGS homolog D) (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase) (Tetrahydrofolate synthase),DHFS-FPGS homolog D cytoplasm [GO:0005737]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; tetrahydrofolylpolyglutamate synthase activity [GO:0004326]; one-carbon metabolic process [GO:0006730],ATP binding [GO:0005524]; tetrahydrofolylpolyglutamate synthase activity [GO:0004326] locus:2078936; AT3G55630 Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine pyrimidine and amino acid synthesis NA NA NA NA NA NA NA ENOG411E9PD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain NA NA NA NA NA NA NA ENOG411E9PE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os05g0590000 protein (Putative nucleoid DNA-binding protein),Nucleoid DNA-binding protein cnd41-like (Os01g0598600 protein),Os01g0598600 protein (Fragment) Q6I5E1,Q94D20,A0A0P0V4T6 Q6I5E1_ORYSJ,Q94D20_ORYSJ,A0A0P0V4T6_ORYSJ Os05g0590000 OSJNBa0022J22.7 OSNPB_050590000,Os01g0598600 OSNPB_010598600 P0025A05.25,Os01g0598600 OSNPB_010598600 ENOG411E9PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) Os01g0154600 protein (cDNA clone:002-112-A05, full insert sequence),Os01g0154500 protein (cDNA clone:002-151-B09, full insert sequence) Q5ZCE2,Q5ZCE3 Q5ZCE2_ORYSJ,Q5ZCE3_ORYSJ Os01g0154600 Os01g0154600 OsJ_00427 OSNPB_010154600 P0011G08.4 P0030H07.46,Os01g0154500 Os01g0154500 OsJ_00426 OSNPB_010154500 P0011G08.3 P0030H07.45 ENOG411E9PC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein NA NA NA NA NA NA NA ENOG411E9PA GGPPS2 O04046 GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 (GGPP synthase 2) (GGPS2) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 2) (Dimethylallyltranstransferase 2) (EC 2.5.1.1) (Farnesyl diphosphate synthase 2) (Farnesyltranstransferase 2) (EC 2.5.1.29) (Geranyltranstransferase 2) (EC 2.5.1.10) FUNCTION: Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase large subunit. In vitro, the large subunit catalyzes mainly the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate while the small subunit alone is inactive. Upon association of the two subunits, the product profile is not changed. {ECO:0000269|PubMed:19482937}. PATHWAY: Isoprenoid biosynthesis; farnesyl diphosphate biosynthesis; farnesyl diphosphate from geranyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranyl diphosphate biosynthesis; geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranylgeranyl diphosphate biosynthesis; geranylgeranyl diphosphate from farnesyl diphosphate and isopentenyl diphosphate: step 1/1. ARA:AT2G23800-MONOMER;MetaCyc:AT2G23800-MONOMER; 2.5.1.-; 2.5.1.1; 2.5.1.29; 2.5.1.10 41339 Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 (GGPP synthase 2) (GGPS2) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 2) (Dimethylallyltranstransferase 2) (EC 2.5.1.1) (Farnesyl diphosphate synthase 2) (Farnesyltranstransferase 2) (EC 2.5.1.29) (Geranyltranstransferase 2) (EC 2.5.1.10) endoplasmic reticulum [GO:0005783]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386]; isoprenoid biosynthetic process [GO:0008299] TISSUE SPECIFICITY: Mainly expressed in flowers. {ECO:0000269|PubMed:10759500}. locus:2048993; AT2G23800 geranylgeranyl pyrophosphate synthase NA NA NA NA NA NA NA ENOG411E9PN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor family ligand binding region NA NA NA NA NA NA NA ENOG411E9PM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Natural resistance-associated macrophage protein NA NA NA NA NA NA NA ENOG411E9PJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PKS_KR NA NA NA NA NA NA NA ENOG411E9PH GSTF10,GSTF9 P42761,O80852 GSTFA_ARATH,GSTF9_ARATH Glutathione S-transferase F10 (AtGSTF10) (EC 2.5.1.18) (AtGSTF4) (GST class-phi member 10) (Protein EARLY RESPONSE TO DEHYDRATION 13),Glutathione S-transferase F9 (AtGSTF9) (EC 2.5.1.18) (AtGSTF7) (GST class-phi member 9) DISRUPTION PHENOTYPE: No visible phenotype, maybe due to the possible redundancy with GSTF9. {ECO:0000269|PubMed:19118534}. FUNCTION: In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and benzyl isothiocyanate (BITC). May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:12090627}.,FUNCTION: In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and benzyl isothiocyanate (BITC), and glutathione peroxidase activity toward cumene hydroperoxide and linoleic acid-13-hydroperoxide. May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:12090627, ECO:0000269|PubMed:16538523}. ARA:AT2G30870-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 24230,24146 Glutathione S-transferase F10 (AtGSTF10) (EC 2.5.1.18) (AtGSTF4) (GST class-phi member 10) (Protein EARLY RESPONSE TO DEHYDRATION 13),Glutathione S-transferase F9 (AtGSTF9) (EC 2.5.1.18) (AtGSTF7) (GST class-phi member 9) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; copper ion binding [GO:0005507]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; response to water deprivation [GO:0009414]; toxin catabolic process [GO:0009407],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; thylakoid [GO:0009579]; vacuole [GO:0005773]; copper ion binding [GO:0005507]; glutathione binding [GO:0043295]; glutathione peroxidase activity [GO:0004602]; glutathione transferase activity [GO:0004364]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; response to zinc ion [GO:0010043]; toxin catabolic process [GO:0009407] TISSUE SPECIFICITY: Expressed in roots, stems, floral buds, mature flowers and leaves. {ECO:0000269|PubMed:19118534}. locus:2052826;,locus:2052811; AT2G30870,AT2G30860 Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411E9PI Q8L7U6,A0A1P8AR48 Q8L7U6_ARATH,A0A1P8AR48_ARATH At1g16750/F19K19_26,Uncharacterized protein 59646,45393 At1g16750/F19K19_26,Uncharacterized protein locus:2015666; AT1G16750 Protein of unknown function DUF547 NA NA NA NA NA NA NA ENOG411E9PV LBD14 Q9SJW5 LBD14_ARATH LOB domain-containing protein 14 (ASYMMETRIC LEAVES 2-like protein 17) (AS2-like protein 17) 21303 LOB domain-containing protein 14 (ASYMMETRIC LEAVES 2-like protein 17) (AS2-like protein 17) TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. locus:2042501; AT2G31310 lob domain-containing protein 14 NA NA NA NA NA NA NA ENOG411E9PW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (By similarity) Os06g0120732 protein A0A0P0WRU0 A0A0P0WRU0_ORYSJ Os06g0120732 OSNPB_060120732 ENOG411E9PT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9PR O80793,F4KA18,F4KFU0 O80793_ARATH,F4KA18_ARATH,F4KFU0_ARATH Putative Ta11-like non-LTR retroelement protein (Zinc knuckle (CCHC-type) family protein),Uncharacterized protein,Zinc knuckle (CCHC-type) family protein 57076,61791,48989 Putative Ta11-like non-LTR retroelement protein (Zinc knuckle (CCHC-type) family protein),Uncharacterized protein,Zinc knuckle (CCHC-type) family protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2054693;,locus:504956368;,locus:504955186; AT2G07760,AT5G28823,AT5G32613 zinc knuckle (CCHC-type) family protein NA NA NA NA NA NA NA ENOG411E9PS NAC105 Q9FH59 NC105_ARATH NAC domain-containing protein 105 (ANAC105) (Protein VASCULAR RELATED NAC-DOMAIN 3) DISRUPTION PHENOTYPE: Reduced secondary wall thickening in vessels and collapsed vessel. {ECO:0000269|PubMed:25148240}. FUNCTION: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. 34321 NAC domain-containing protein 105 (ANAC105) (Protein VASCULAR RELATED NAC-DOMAIN 3) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell wall organization [GO:0071555]; multicellular organism development [GO:0007275]; positive regulation of secondary cell wall biogenesis [GO:1901348]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; xylem vessel member cell differentiation [GO:0048759] DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. TISSUE SPECIFICITY: Detected in root protoxylem and metaxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Present in developing xylems (PubMed:16103214, PubMed:17565617). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. locus:2155046; AT5G66300 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E9PP PLL2 Q9LZ86 P2C66_ARATH Probable protein phosphatase 2C 66 (AtPP2C66) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 2) (Protein phosphatase 2C PLL2) (PP2C PLL2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16112663}. 3.1.3.16 74838 Probable protein phosphatase 2C 66 (AtPP2C66) (EC 3.1.3.16) (Protein POLTERGEIST-LIKE 2) (Protein phosphatase 2C PLL2) (PP2C PLL2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] TISSUE SPECIFICITY: Expressed at low level in seedlings, roots, leaves, stems, young inflorescences, flowers and siliques. {ECO:0000269|PubMed:16112663}. locus:2180152; AT5G02400 PP2Cc NA NA NA NA NA NA NA ENOG411E9PQ TRM27 Q9SJR3 Q9SJR3_ARATH Nucleolin-like protein (Uncharacterized protein At2g36420) 50591 Nucleolin-like protein (Uncharacterized protein At2g36420) locus:2044888; AT2G36420 NA NA NA NA NA NA NA NA ENOG411E9PZ ARR21,ARR13,RR23 Q9LYP5,Q9ZVD3,F4K554 ARR21_ARATH,ARR13_ARATH,F4K554_ARATH Putative two-component response regulator ARR21,Putative two-component response regulator ARR13,Response regulator 23 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|Ref.3}. No visible phenotype. FUNCTION: Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. 69383,65044,16806 Putative two-component response regulator ARR21,Putative two-component response regulator ARR13,Response regulator 23 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay response regulator activity [GO:0000156]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}. locus:2174063; AT5G07210,AT2G27070,AT5G62120 transcriptional activator that binds specifically to the DNA sequence 5'- AG GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity) NA NA NA NA NA NA NA ENOG411E9PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3354) NA NA NA NA NA NA NA ENOG411E9P6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Capsular polysaccharide synthesis protein NA NA NA NA NA NA NA ENOG411E9P7 Q9CAI9,A0A1P8AST2,A0A1P8ASX0 Q9CAI9_ARATH,A0A1P8AST2_ARATH,A0A1P8ASX0_ARATH Protein kinase superfamily protein (Uncharacterized protein F28P22.5),Protein kinase superfamily protein 77918,78291,62138 Protein kinase superfamily protein (Uncharacterized protein F28P22.5),Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2030245; AT1G72760 STYKc NA NA NA NA NA NA NA ENOG411E9P4 AEE4,AEE9,AEE10 O80658,Q9LPK6,Q9LPK7 AAE4_ARATH,AEE9_ARATH,AEE10_ARATH Probable acyl-activating enzyme 4 (EC 6.2.1.-) (AMP-binding protein 4) (AtAMPBP4),Probable acyl-activating enzyme 9 (EC 6.2.1.-) (AMP-binding protein 9) (AtAMPBP9),Probable acyl-activating enzyme 10 (EC 6.2.1.-) (AMP-binding protein 10) (AtAMPBP10) FUNCTION: May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. {ECO:0000250}. ARA:GQT-590-MONOMER;,ARA:AT1G21540-MONOMER;,ARA:AT1G21530-MONOMER; 6.2.1.- 60011,60634,60800 Probable acyl-activating enzyme 4 (EC 6.2.1.-) (AMP-binding protein 4) (AtAMPBP4),Probable acyl-activating enzyme 9 (EC 6.2.1.-) (AMP-binding protein 9) (AtAMPBP9),Probable acyl-activating enzyme 10 (EC 6.2.1.-) (AMP-binding protein 10) (AtAMPBP10) ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and developing seeds. {ECO:0000269|PubMed:12805634}.,TISSUE SPECIFICITY: Expressed in leaves, flowers and developing seeds. {ECO:0000269|PubMed:12805634}.,TISSUE SPECIFICITY: Expressed at low levels in roots. {ECO:0000269|PubMed:12805634}. locus:2195950;,locus:2027032;,locus:2027012; AT1G77240,AT1G21540,AT1G21530 AMP-binding enzyme NA NA NA NA NA NA NA ENOG411E9P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E9P2 WRKY61 Q8VWV6 WRK61_ARATH Probable WRKY transcription factor 61 (WRKY DNA-binding protein 61) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 52914 Probable WRKY transcription factor 61 (WRKY DNA-binding protein 61) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2034964; AT1G18860 transcription factor NA NA NA NA NA NA NA ENOG411E9P3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9P0 Q9ZV75 Q9ZV75_ARATH Transmembrane protein, putative (DUF1985) (Uncharacterized protein At2g07190) 51972 Transmembrane protein, putative (DUF1985) (Uncharacterized protein At2g07190) integral component of membrane [GO:0016021] locus:2060177; AT2G07190 Has 131 Blast hits to 131 proteins in 25 species Archae - 0 NA NA NA NA NA NA NA ENOG411E9P8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0693000 protein (Putative leucine-rich repeat transmembrane protein kinase 1) (cDNA clone:J023008B11, full insert sequence) Q84NQ1 Q84NQ1_ORYSJ P0034A04.124 Os07g0693000 OsJ_25683 OSNPB_070693000 ENOG411E9P9 Q9SRQ4,A0A1I9LPQ4,A0A1I9LPQ5 Q9SRQ4_ARATH,A0A1I9LPQ4_ARATH,A0A1I9LPQ5_ARATH T21P5.8 protein (TatD related DNase),TatD related DNase 29978,26653,22252 T21P5.8 protein (TatD related DNase),TatD related DNase endodeoxyribonuclease activity, producing 5'-phosphomonoesters [GO:0016888],hydrolase activity, acting on ester bonds [GO:0016788] locus:2099684; AT3G03500 TatD related DNase NA NA NA NA NA NA NA ENOG411DZFW PCMP-E68 Q9CA73 PP119_ARATH Putative pentatricopeptide repeat-containing protein At1g74400 52664 Putative pentatricopeptide repeat-containing protein At1g74400 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2019105; AT1G74400 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DZFR Q84JW0,B9DHA5 Q84JW0_ARATH,B9DHA5_ARATH 3-dehydroquinate synthase (Uncharacterized protein At3g28760),3-dehydroquinate synthase (AT3G28760 protein) 47047,49599 3-dehydroquinate synthase (Uncharacterized protein At3g28760),3-dehydroquinate synthase (AT3G28760 protein) 3-dehydroquinate synthase activity [GO:0003856]; oxidoreductase activity [GO:0016491]; aromatic amino acid family biosynthetic process [GO:0009073] locus:2098428; AT3G28760 3-dehydroquinate Os03g0170300 protein (Predicted 3-dehydroquinate synthase family protein, expressed) (cDNA clone:J013107M24, full insert sequence) Q8S7W6 Q8S7W6_ORYSJ OSJNBa0091P11.6 LOC_Os03g07420 Os03g0170300 OSNPB_030170300 ENOG411DZFD Q94F50,Q9FKB7 Q94F50_ARATH,Q9FKB7_ARATH AT5g48790/K24G6_12 (LOW PSII ACCUMULATION protein (DUF1995)),LOW PSII ACCUMULATION protein (DUF1995) 35860,27910 AT5g48790/K24G6_12 (LOW PSII ACCUMULATION protein (DUF1995)),LOW PSII ACCUMULATION protein (DUF1995) chloroplast [GO:0009507]; photosystem II assembly [GO:0010207] locus:2156504; AT5G48790 Domain of unknown function (DUF1995) Os02g0129300 protein A0A0P0VED6 A0A0P0VED6_ORYSJ Os02g0129300 OSNPB_020129300 ENOG411EEH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os05g0570200 protein (Fragment),Os01g0774400 protein (Fragment),Os05g0570350 protein (Fragment) A0A0P0WR08,A0A0P0V8V9,A0A0N7KL98 A0A0P0WR08_ORYSJ,A0A0P0V8V9_ORYSJ,A0A0N7KL98_ORYSJ Os05g0570200 OSNPB_050570200,Os01g0774400 OSNPB_010774400,Os05g0570350 OSNPB_050570350 ENOG411EEH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0485000 protein,Expressed protein (Os11g0504000 protein),Os08g0493500 protein B9GAQ4,Q2R3T6,A0A0P0XHI1 B9GAQ4_ORYSJ,Q2R3T6_ORYSJ,A0A0P0XHI1_ORYSJ Os11g0485000 OsJ_33911 OSNPB_110485000,Os11g0504000 LOC_Os11g30820 Os11g0504000 OsJ_33988 OSNPB_110504000,Os08g0493500 OSNPB_080493500 ENOG411EEHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EK1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor IIA alpha/beta subunit NA NA NA NA NA NA NA ENOG411DUH9 Q8RWY8 Q8RWY8_ARATH Nucleic acid binding protein (Uncharacterized protein At1g27750) 117447 Nucleic acid binding protein (Uncharacterized protein At1g27750) nucleic acid binding [GO:0003676] locus:2199236; AT1G27750 SPOC domain Os01g0765200 protein (Fragment),Os01g0765300 protein (Fragment) Q0JJ16,A0A0P0V8I6 Q0JJ16_ORYSJ,A0A0P0V8I6_ORYSJ Os01g0765200 Os01g0765200 OSNPB_010765200,Os01g0765300 OSNPB_010765300 ENOG411DUH4 A0A1P8B4E4,F4JR53,F4JR52 A0A1P8B4E4_ARATH,F4JR53_ARATH,F4JR52_ARATH ARM repeat superfamily protein R-ATH-6791226; 297524,294800,296882 ARM repeat superfamily protein 90S preribosome [GO:0030686]; Golgi apparatus [GO:0005794]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2126664; AT4G30990 Down-regulated in metastasis Os01g0584800 protein (Fragment) A0A0P0V4L0 A0A0P0V4L0_ORYSJ Os01g0584800 OSNPB_010584800 ENOG411DUH3 dl3985w O24610,A0A1P8B7R3 O24610_ARATH,A0A1P8B7R3_ARATH Binding protein (Uncharacterized protein AT4g15890) (Uncharacterized protein dl3985w),Binding protein R-ATH-2299718; 144738,144238 Binding protein (Uncharacterized protein AT4g15890) (Uncharacterized protein dl3985w),Binding protein condensed chromosome, centromeric region [GO:0000779]; nuclear condensin complex [GO:0000799]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; chromosome separation [GO:0051304]; meiotic chromosome condensation [GO:0010032]; microsporogenesis [GO:0009556]; mitotic chromosome condensation [GO:0007076],nuclear condensin complex [GO:0000799]; mitotic chromosome condensation [GO:0007076] locus:2130869; AT4G15890 Condensin-2 complex subunit G14587-6, putative, expressed (Os12g0548100 protein) Q2QP00 Q2QP00_ORYSJ LOC_Os12g36170 Os12g0548100 OSNPB_120548100 ENOG411DUHE THO3 Q9FKT5 THOC3_ARATH THO complex subunit 3 (TEX1 homolog) (AtTEX1) DISRUPTION PHENOTYPE: Developmental defects as well as reduced levels of endogenous trans-acting small interfering RNA (ta-siRNA). {ECO:0000269|PubMed:20798330}. FUNCTION: Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. Contributes to the integrity of the endogenous trans-acting small interfering RNA (ta-siRNA) pathway. May process or transport a long RNA molecule so that it can be a template for secondary siRNA production. May participate in the trafficking of siRNA precursors to the ARGONAUTE catalytic center. Required for the generation of functional messenger ribonucleoproteins (mRNPs). {ECO:0000269|PubMed:20634427, ECO:0000269|PubMed:20798330}. 35375 THO complex subunit 3 (TEX1 homolog) (AtTEX1) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; THO complex [GO:0000347]; THO complex part of transcription export complex [GO:0000445]; RNA binding [GO:0003723]; gene silencing by RNA [GO:0031047]; mRNA export from nucleus [GO:0006406]; mRNA processing [GO:0006397]; production of ta-siRNAs involved in RNA interference [GO:0010267]; RNA splicing [GO:0008380] locus:2161840; AT5G56130 Tho complex subunit Os09g0298400 protein (Putative THO complex 3) Q69VQ7 Q69VQ7_ORYSJ Os09g0298400 Os09g0298400 OJ1381_H04.24 OsJ_28757 OSNPB_090298400 ENOG411DUHD ABCE3,ABCE2 Q9M0D0,Q8LPJ4 AB3E_ARATH,AB2E_ARATH ABC transporter E family member 3 (ABC transporter ABCE.3) (AtABCE3) (MRP-related protein 4) (Non-intrinsic ABC protein 15) (AtNAP15) (RNase L inhibitor-like protein 3) (AthaRLI3),ABC transporter E family member 2 (ABC transporter ABCE.2) (AtABCE2) (RNase L inhibitor-like protein 2) (AtRLI2) (AthaRLI2) 20632,68390 ABC transporter E family member 3 (ABC transporter ABCE.3) (AtABCE3) (MRP-related protein 4) (Non-intrinsic ABC protein 15) (AtNAP15) (RNase L inhibitor-like protein 3) (AthaRLI3),ABC transporter E family member 2 (ABC transporter ABCE.2) (AtABCE2) (RNase L inhibitor-like protein 2) (AtRLI2) (AthaRLI2) cell [GO:0005623]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; iron ion binding [GO:0005506]; ribosomal small subunit binding [GO:0043024]; transporter activity [GO:0005215]; ribosomal subunit export from nucleus [GO:0000054]; translational initiation [GO:0006413]; translational termination [GO:0006415],cell [GO:0005623]; membrane [GO:0016020]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; iron ion binding [GO:0005506]; ribosomal small subunit binding [GO:0043024]; transporter activity [GO:0005215]; ribosomal subunit export from nucleus [GO:0000054]; translational initiation [GO:0006413]; translational termination [GO:0006415] TISSUE SPECIFICITY: Mostly expressed in roots and leaves, and, to a lower extent, in stems, flowers and siliques. {ECO:0000269|PubMed:15383904}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:15383904}. locus:2118756;,locus:2134761; AT4G30300,AT4G19210 ABC transporter E family member Os11g0546000 protein A0A0P0Y344 A0A0P0Y344_ORYSJ Os11g0546000 OSNPB_110546000 ENOG411DUHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0557900 protein (cDNA clone:J033121F20, full insert sequence) Q6I5Z9 Q6I5Z9_ORYSJ Os05g0557900 Os05g0557900 OJ1214_E03.20 OSJNBa0001A14.2 OSNPB_050557900 ENOG411DUHX PAT23 Q3EC11 ZDHC2_ARATH Probable protein S-acyltransferase 23 (EC 2.3.1.225) (Probable palmitoyltransferase At2g14255) (Zinc finger DHHC domain-containing protein At2g14255) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.4}. 2.3.1.225; 2.3.1.225 59988 Probable protein S-acyltransferase 23 (EC 2.3.1.225) (Probable palmitoyltransferase At2g14255) (Zinc finger DHHC domain-containing protein At2g14255) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and pollen. {ECO:0000269|PubMed:22968831}. locus:1006230134; AT2G14255 S-acyltransferase At2g14255-like S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) (Fragment) Q0IS80 Q0IS80_ORYSJ Os11g0549700 OSNPB_110549700 ENOG411DUHU bVPE Q39044 VPEB_ARATH Vacuolar-processing enzyme beta-isozyme (EC 3.4.22.34) (Asparaginyl endopeptidase beta-VPE) (Beta-VPE) DISRUPTION PHENOTYPE: No macroscopic phenotype, probably due to functional redundancy (PubMed:12417707, PubMed:14688293). Slight differences in polypeptide accumulation in seeds with an increased amount of propolypeptide forms of legumin-type globulins (PubMed:12417707). In plants lacking all vacuolar-processing enzyme isozymes (e.g. alpha, beta, gamma and delta) shift of storage protein accumulation from normally processed polypeptides to a finite number of prominent alternatively processed polypeptides cleaved at sites other than the conserved Asn residues targeted by VPE (PubMed:14688293). {ECO:0000269|PubMed:12417707, ECO:0000269|PubMed:14688293}. FUNCTION: Asparagine-specific endopeptidase involved in the processing of vacuolar seed protein precursors into the mature forms (By similarity). Probably involved in post-translational proteolysis of seed storage proteins in the protein storage vacuole of developing seeds (PubMed:12417707, PubMed:14688293). {ECO:0000250|UniProtKB:P49043, ECO:0000269|PubMed:12417707, ECO:0000269|PubMed:14688293}. 3.4.22.34 53828 Vacuolar-processing enzyme beta-isozyme (EC 3.4.22.34) (Asparaginyl endopeptidase beta-VPE) (Beta-VPE) protein storage vacuole [GO:0000326]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603]; vacuolar protein processing [GO:0006624] TISSUE SPECIFICITY: Seed specific. Also expressed in the flowers and buds. {ECO:0000269|PubMed:10417725, ECO:0000269|PubMed:14688293, ECO:0000269|PubMed:7579169}. locus:2026242; AT1G62710 vacuolar-processing enzyme Vacuolar-processing enzyme beta-isozyme 1 (Beta-VPE 1) (OsVPE1) (EC 3.4.22.34) (Asparaginyl endopeptidase VPE1),Os02g0644000 protein (Fragment),Asparaginyl endopeptidase REP-2 (Os02g0644000 protein) Q84LM2,Q0DZ62,Q8GS39 VPE1_ORYSJ,Q0DZ62_ORYSJ,Q8GS39_ORYSJ VPE1 Glup3 Os04g0537900 OsJ_15605,Os02g0644000 Os02g0644000 OSNPB_020644000,Rep2 OJ1282_H11.16-2 Os02g0644000 OsJ_07703 OSNPB_020644000 DISRUPTION PHENOTYPE: In PAK22, higher quantities of 57 kDa polypeptides and lower levels of 40 kDa acidic and 20 kDa basic glutelin subunits in seeds due to reduced vacuolar processing enzyme (VPE) activity and leading to non-crystalline lattice structure of protein storage vacuoles (PSVs). Seedlings growth retardation. {ECO:0000269|PubMed:19933265, ECO:0000269|Ref.1}. FUNCTION: Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles. Cysteine protease required for post-translational proteolysis of seed storage proteins in the protein storage vacuole (PSV) of developing seeds, by processing of proglutelin precursor to mature glutelin subunits, thus contributing to the formation of protein crystalline structures in PSV (Ref.1, PubMed:19154227, PubMed:19933265). {ECO:0000269|PubMed:19154227, ECO:0000269|PubMed:19933265, ECO:0000269|Ref.1}. ENOG411DUHR RPN8B,RPN8A,MEE34 Q9C774,O24412,F4K0U3,F4J683 PSD7B_ARATH,PSD7A_ARATH,F4K0U3_ARATH,F4J683_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog B (26S proteasome regulatory subunit RPN8b) (AtRPN8b) (Protein MATERNAL EFFECT EMBRYO ARREST 34),26S proteasome non-ATPase regulatory subunit 7 homolog A (26S proteasome regulatory subunit RPN8a) (AtRPN8a) (Protein ASYMMETRIC LEAVES ENHANCER 3) (Protein MOV34) (AtMOV34),RP non-ATPase subunit 8A,Mov34/MPN/PAD-1 family protein DISRUPTION PHENOTYPE: Slightly dwarfish, with long and narrow rosette leaves. Exhibits a delayed flowering time. Mutant displays enhanced susceptibility to the fungal pathogen G. cichoracearum. {ECO:0000269|PubMed:17028202, ECO:0000269|PubMed:22577987}. Produces abaxialized leaves. Semi-dwarf; Long, narrow rosette leaves; Increased rosette leaf number; Incomplete penetrance of cauline leaves forming additional ectopic leaves; Abnormal cauline leaf phyllotaxy; Long pedicels; Abnormal floral organ number; Late flowering; Abnormal trichome morphology-H. Huang-2006 FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}.,FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Required for innate immunity. {ECO:0000250, ECO:0000269|PubMed:22577987}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 35085,34728,34372,34729 26S proteasome non-ATPase regulatory subunit 7 homolog B (26S proteasome regulatory subunit RPN8b) (AtRPN8b) (Protein MATERNAL EFFECT EMBRYO ARREST 34),26S proteasome non-ATPase regulatory subunit 7 homolog A (26S proteasome regulatory subunit RPN8a) (AtRPN8a) (Protein ASYMMETRIC LEAVES ENHANCER 3) (Protein MOV34) (AtMOV34),RP non-ATPase subunit 8A,Mov34/MPN/PAD-1 family protein nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle [GO:0005838]; embryo development ending in seed dormancy [GO:0009793]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163],cytosol [GO:0005829]; proteasome complex [GO:0000502]; proteasome regulatory particle [GO:0005838]; innate immune response [GO:0045087]; leaf morphogenesis [GO:0009965]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],proteasome regulatory particle [GO:0005838] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884, ECO:0000269|PubMed:17028202}. locus:2074653;,locus:2166449; AT3G11270,AT5G05780 26S proteasome non-atpase regulatory subunit Os04g0661900 protein A0A0N7KJV4 A0A0N7KJV4_ORYSJ Os04g0661900 OSNPB_040661900 ENOG411EFI8 ATL14 Q9M0C3 ATL14_ARATH RING-H2 finger protein ATL14 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL14) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 20767 RING-H2 finger protein ATL14 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL14) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to chitin [GO:0010200] locus:2118651; AT4G30370 zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EFI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0171200 protein (cDNA clone:002-129-F03, full insert sequence),Os01g0171200 protein Q5VQL7,A0A0P0UYY7 Q5VQL7_ORYSJ,A0A0P0UYY7_ORYSJ P0583G08.21-1 Os01g0171200 OSNPB_010171200,Os01g0171200 OSNPB_010171200 ENOG411EFI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF565) NA NA NA NA NA NA NA ENOG411EFI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFI7 T10K17.180 Q9M2Q1 Q9M2Q1_ARATH Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (Uncharacterized protein T10K17.180) 35789 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (Uncharacterized protein T10K17.180) defense response to fungus [GO:0050832] locus:2095868; AT3G57970 ENT domain NA NA NA NA NA NA NA ENOG411EFI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0961600 protein (cDNA clone:001-114-G11, full insert sequence) Q5JMT2 Q5JMT2_ORYSJ Os01g0961600 Os01g0961600 OsJ_04850 OSNPB_010961600 P0483G10.15 ENOG411EFI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein Os01g0202700 protein A0A0N7KCI6 A0A0N7KCI6_ORYSJ Os01g0202700 OSNPB_010202700 ENOG411EFIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein A0A0P0XSY5 A0A0P0XSY5_ORYSJ Os10g0333700 OSNPB_100333700 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EFIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0282600 protein Q10N50 Q10N50_ORYSJ Os03g0282600 LOC_Os03g17426 OSNPB_030282600 ENOG411EFIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR NA NA NA NA NA NA NA ENOG411EFII bZIP48 Q8RU59 Q8RU59_ARATH BZIP protein (AtbZIP48) (Basic leucine-zipper 48) (Uncharacterized protein At2g04038) 19502 BZIP protein (AtbZIP48) (Basic leucine-zipper 48) (Uncharacterized protein At2g04038) transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2827461; AT2G04038 basic leucine-zipper 48 NA NA NA NA NA NA NA ENOG411EFIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os11g0147700 protein,Os01g0594600 protein (Fragment) B9G9E5,A0A0P0V4R6 B9G9E5_ORYSJ,A0A0P0V4R6_ORYSJ Os11g0147700 Os11g0147700 OsJ_32961 OSNPB_110147700,Os01g0594600 OSNPB_010594600 ENOG411EFIM Q9CAL7 Q9CAL7_ARATH At1g70470 (Transmembrane protein) (Uncharacterized protein F24J13.4) 16232 At1g70470 (Transmembrane protein) (Uncharacterized protein F24J13.4) integral component of membrane [GO:0016021] locus:2026851; AT1G70470 NA NA NA NA NA NA NA NA ENOG411EFIB SAUR50,SAUR8 O65695,Q9SI60 SAU50_ARATH,Q9SI60_ARATH Auxin-responsive protein SAUR50 (Protein SMALL AUXIN UP RNA 50),Putative auxin-induced protein (SAUR-like auxin-responsive protein family) FUNCTION: Effector of hormonal and environmental signals in plant growth. {ECO:0000305|PubMed:25983207}. 12139,12295 Auxin-responsive protein SAUR50 (Protein SMALL AUXIN UP RNA 50),Putative auxin-induced protein (SAUR-like auxin-responsive protein family) auxin-activated signaling pathway [GO:0009734]; regulation of growth [GO:0040008],response to auxin [GO:0009733] locus:2139589;,locus:2045086; AT4G34760,AT2G16580 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP_N NA NA NA NA NA NA NA ENOG411EFIA Q9ZQ36 Q9ZQ36_ARATH TPRXL (Uncharacterized protein At2g24310) 33805 TPRXL (Uncharacterized protein At2g24310) locus:2061006; AT2G24310 NA NA NA NA NA NA NA NA ENOG411EFIF Q6NNH0 Q6NNH0_ARATH At1g54095 (DUF1677 family protein, putative (DUF1677)) 15871 At1g54095 (DUF1677 family protein, putative (DUF1677)) locus:504956306; AT1G54095 Protein of unknown function (DUF1677) NA NA NA NA NA NA NA ENOG411EFIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2465) NA NA NA NA NA NA NA ENOG411EFID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EFIE O64867 O64867_ARATH At2g44330 (At2g44330/F4I1.14) (RING/U-box superfamily protein) (Uncharacterized protein At2g44330) R-ATH-983168; 19769 At2g44330 (At2g44330/F4I1.14) (RING/U-box superfamily protein) (Uncharacterized protein At2g44330) ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2050522; AT2G44330 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EFIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EFIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0545300 protein Q6ZBH1 Q6ZBH1_ORYSJ Os08g0545300 OJ1323_A06.5 OSNPB_080545300 P0623F08.38 ENOG411EFIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFIR ATL39 Q9M0R7 ATL39_ARATH RING-H2 finger protein ATL39 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL39) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 14892 RING-H2 finger protein ATL39 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL39) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2122348; AT4G09100 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EFIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: splicing factor NA NA NA NA NA NA NA ENOG411EFIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EFIV Q1G3I3 Q1G3I3_ARATH Uncharacterized protein 11525 Uncharacterized protein locus:1009023359; AT4G14819 Protein of unknown function (DUF1677) NA NA NA NA NA NA NA ENOG411EFIW ZAT8,ZAT7,F12M12_40 Q9LX85,Q42453,Q9LX86 ZAT8_ARATH,ZAT7_ARATH,Q9LX86_ARATH Zinc finger protein ZAT8,Zinc finger protein ZAT7,C2H2-type zinc finger family protein (Uncharacterized protein At3g46070) (Zinc finger family protein) (Zinc finger-like protein) FUNCTION: Probable transcription factor that may be involved in stress responses. {ECO:0000250}.,FUNCTION: Probable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}. MISCELLANEOUS: Plants overexpressing ZAT7 show retarded growth and development, and enhanced tolerance to oxidative stress. 17740,18359,18754 Zinc finger protein ZAT8,Zinc finger protein ZAT7,C2H2-type zinc finger family protein (Uncharacterized protein At3g46070) (Zinc finger family protein) (Zinc finger-like protein) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of growth [GO:0045926]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; response to oxidative stress [GO:0006979]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:9132053}. locus:2075276;,locus:2075291;,locus:2075261; AT3G46080,AT3G46090,AT3G46070 zinc finger NA NA NA NA NA NA NA ENOG411EFIT O80858 O80858_ARATH Expressed protein (Uncharacterized protein At2g30930) (Uncharacterized protein At2g30930; F7F1.14) 16936 Expressed protein (Uncharacterized protein At2g30930) (Uncharacterized protein At2g30930; F7F1.14) chloroplast [GO:0009507]; membrane [GO:0016020]; plasma membrane [GO:0005886] locus:2052776; AT2G30930 NA NA NA NA NA NA NA NA ENOG411EFIU F11M21.26 Q9ZWA3 Q9ZWA3_ARATH F11M21.26 protein (Nucleic acid-binding, OB-fold-like protein) 15669 F11M21.26 protein (Nucleic acid-binding, OB-fold-like protein) locus:2024239; AT1G03810 Inherit from euNOG: DNA-binding protein-related NA NA NA NA NA NA NA ENOG411DXZI Q8RXR6,Q9LT24,A0A1P8AQY8 Y1028_ARATH,Y3985_ARATH,A0A1P8AQY8_ARATH BTB/POZ domain-containing protein At1g50280,BTB/POZ domain-containing protein At3g19850,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 60034,62991,56248 BTB/POZ domain-containing protein At1g50280,BTB/POZ domain-containing protein At3g19850,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:2011882;,locus:2092301; AT1G50280,AT3G19850 BTB POZ domain-containing protein OSJNBa0018M05.10 protein (Os04g0674300 protein),Os04g0674300 protein (Fragment) Q7XQ98,A0A0P0WG74 Q7XQ98_ORYSJ,A0A0P0WG74_ORYSJ Os04g0674300 Os04g0674300 OsJ_16599 OSJNBa0018M05.10 OSNPB_040674300,Os04g0674300 OSNPB_040674300 ENOG411DXZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENTH Os06g0175500 protein (Putative phosphoprotein) (cDNA clone:J023096B16, full insert sequence),Clathrin assembly protein AP180 short form-like (Os02g0803300 protein) (cDNA clone:J033048F22, full insert sequence),Os06g0175500 protein (Fragment) Q658F5,Q69SJ3,A0A0P0WTD4 Q658F5_ORYSJ,Q69SJ3_ORYSJ,A0A0P0WTD4_ORYSJ Os06g0175500 OSNPB_060175500 P0015E04.14,Os02g0803300 Os02g0803300 OsJ_08760 OSNPB_020803300 P0689B12.27,Os06g0175500 OSNPB_060175500 ENOG411DXZT MRA19.23 F4KEN0,F4KEN1 F4KEN0_ARATH,F4KEN1_ARATH Ubiquitin carboxyl-terminal hydrolase family protein 51896,41639 Ubiquitin carboxyl-terminal hydrolase family protein hydrolase activity [GO:0016787] locus:2171983; AT5G45790 Plant organelle RNA recognition domain Os02g0464400 protein,Os12g0130100 protein B9EZV6,A0A0P0Y6R1 B9EZV6_ORYSJ,A0A0P0Y6R1_ORYSJ Os02g0464400 OsJ_06652 OSNPB_020464400,Os12g0130100 OSNPB_120130100 ENOG411DXZX RAD51B Q9SK02,F4IIR6 RA51B_ARATH,F4IIR6_ARATH DNA repair protein RAD51 homolog 2 (AtRAD51B),DNA repair (Rad51) family protein Plants are hypersensitive to Mitomycin C as determined by reduced growth on this medium. Sensitive to mitomycin C (DNA cross-linking agent)-C. White-2005 FUNCTION: May be involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. {ECO:0000250}. R-ATH-5693616;R-ATH-983231; 40468,37043 DNA repair protein RAD51 homolog 2 (AtRAD51B),DNA repair (Rad51) family protein Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281]; meiotic DNA recombinase assembly [GO:0000707]; mitotic recombination [GO:0006312]; reciprocal meiotic recombination [GO:0007131]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148],Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; double-strand break repair via homologous recombination [GO:0000724] TISSUE SPECIFICITY: Preferentially expressed in flower buds and roots. {ECO:0000269|PubMed:15952068}. locus:2056583; AT2G28560 DNA repair protein Rad51 Os05g0121700 protein (Putative DNA repair protein RAD51) (cDNA clone:002-105-H03, full insert sequence) (cDNA clone:002-130-D03, full insert sequence) Q60F40 Q60F40_ORYSJ Os05g0121700 OJ1001_G01.12 OsJ_16938 OSNPB_050121700 ENOG411DXZY TPP2,TPP1 Q9M9Z2,O04348 TPP2_ARATH,TPP1_ARATH Probable thylakoidal processing peptidase 2, chloroplastic (EC 3.4.21.89) (Signal peptidase I-2),Thylakoidal processing peptidase 1, chloroplastic (EC 3.4.21.89) (Signal peptidase I-1) FUNCTION: Cleaves the thylakoid-transfer domain from a chloroplast protein. {ECO:0000250}.,FUNCTION: Cleaves the thylakoid-transfer domain from a chloroplast protein. {ECO:0000269|PubMed:9422718}. 3.4.21.89 40150,37853 Probable thylakoidal processing peptidase 2, chloroplastic (EC 3.4.21.89) (Signal peptidase I-2),Thylakoidal processing peptidase 1, chloroplastic (EC 3.4.21.89) (Signal peptidase I-1) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; serine-type peptidase activity [GO:0008236],chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; endopeptidase activity [GO:0004175]; serine-type peptidase activity [GO:0008236]; signal peptide processing [GO:0006465] locus:2033108;,locus:2064337; AT1G06870,AT2G30440 Thylakoidal processing peptidase Chloroplast thylakoidal processing peptidase-like protein (Os09g0453400 protein) Q67UZ3 Q67UZ3_ORYSJ Os09g0453400 Os09g0453400 OsJ_29602 OSNPB_090453400 P0488D02.23 ENOG411EH10 Q8GYM5 Q8GYM5_ARATH Ankyrin repeat protein (Uncharacterized protein At1g62045) 7331 Ankyrin repeat protein (Uncharacterized protein At1g62045) locus:505006198; AT1G62045 Inherit from KOG: ankyrin repeat domain NA NA NA NA NA NA NA ENOG411EKZF Q949P5,F4J554 Q949P5_ARATH,F4J554_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g17365),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 27352,31784 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g17365),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:505006354; AT3G17365 Thiopurine S-methyltransferase (TPMT) Os08g0517600 protein Q7EZA4,Q7EZA5 Q7EZA4_ORYSJ,Q7EZA5_ORYSJ P0700D12.112-2 Os08g0517600 OSNPB_080517600,P0700D12.112-1 Os08g0517600 OSNPB_080517600 ENOG411EKZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA methyltransferase-like protein 13-like Os08g0520400 protein (cDNA clone:001-131-H10, full insert sequence) (cDNA clone:J033093G21, full insert sequence) Q6YZW1 Q6YZW1_ORYSJ Os08g0520400 OJ1003_A09.13 OSNPB_080520400 P0689E12.37 ENOG411EKZD MCC1 Q9M8T9,Q9LFD8,Q6NLS5,A0A1I9LNJ6,F4KFH9 MCC1_ARATH,Q9LFD8_ARATH,Q6NLS5_ARATH,A0A1I9LNJ6_ARATH,F4KFH9_ARATH Histone acetyltransferase MCC1 (EC 2.3.1.48) (Protein MEIOTIC CONTROL OF CROSSOVERS 1),Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein F5E19_140),Acyl-CoA N-acyltransferases (NAT) superfamily protein (At5g16800),MEIOTIC CONTROL OF CROSSOVERS1,Acyl-CoA N-acyltransferases (NAT) superfamily protein FUNCTION: Histone acetyltransferase that probably regulates acetylation status of histone H3 during meiosis. Histone acetylation may influence recombination and chromosome segregation. {ECO:0000269|PubMed:20230492}. MISCELLANEOUS: The gain-of-function mutant mcc1 (T-DNA tagging) has elongated rosette leaves, increased stem length elongation, early flowering and reduced fertility and seed number due to defects in meiosis. {ECO:0000305|PubMed:20230492}. 2.3.1.48 28306,31318,30835,20218,27195 Histone acetyltransferase MCC1 (EC 2.3.1.48) (Protein MEIOTIC CONTROL OF CROSSOVERS 1),Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein F5E19_140),Acyl-CoA N-acyltransferases (NAT) superfamily protein (At5g16800),MEIOTIC CONTROL OF CROSSOVERS1,Acyl-CoA N-acyltransferases (NAT) superfamily protein histone acetyltransferase activity [GO:0004402]; peptide alpha-N-acetyltransferase activity [GO:0004596]; chromosome segregation [GO:0007059]; histone H3 acetylation [GO:0043966]; meiotic cell cycle [GO:0051321]; N-terminal peptidyl-methionine acetylation [GO:0017196]; nucleosome assembly [GO:0006334],histone acetyltransferase activity [GO:0004402]; peptide alpha-N-acetyltransferase activity [GO:0004596]; chromosome segregation [GO:0007059]; histone H3 acetylation [GO:0043966]; N-terminal peptidyl-methionine acetylation [GO:0017196]; nucleosome assembly [GO:0006334],N-acetyltransferase activity [GO:0008080] locus:2075467;,locus:2149030; AT3G02980,AT5G16800 Acetyltransferase (GNAT) family Os02g0694201 protein (Fragment) C7IYZ1 C7IYZ1_ORYSJ Os02g0694201 Os02g0694201 OSNPB_020694201 ENOG411EKZE PURU2,PURU1 F4JP46,Q93YQ3,A0A1P8B4L8,A0A1P8B4M0 PURU2_ARATH,PURU1_ARATH,A0A1P8B4L8_ARATH,A0A1P8B4M0_ARATH Formyltetrahydrofolate deformylase 2, mitochondrial (EC 3.5.1.10),Formyltetrahydrofolate deformylase 1, mitochondrial (EC 3.5.1.10),Formyl transferase DISRUPTION PHENOTYPE: No visible phenotype. Puru1 and puru2 double mutant shows a 70-fold increase in Gly levels and accumulates elevated levels of 5- and 10-formyl THF. Embryo development arrests between heart and early bent cotyledon stages, and mature seeds are shriveled, accumulate low amounts of lipids, and fail to germinate. Puru1 and puru2 double mutant is only conditionally lethal and is rescued by growth under nonphotorespiratory conditions. Puru1, puru2 and fold1 triple mutant shows no photorespiratory phenotype. {ECO:0000269|PubMed:18628352}. smaller and paler plants. delayed flowering. shriveled nonviable seeds carrying colorless embryos. delayed embryo development. embryos were arrested typically at the heart to torpedo stages. The leaves of the double knock-out plants had a 70-fold increase in glycine level and a 6-fold increase in 5-formayl THF level. FUNCTION: Deformylase involved in photorespiration. Prevents excessive accumulation of 5-formyl tetrahydrofolate (THF), a potent inhibitor of the Gly decarboxylase/Ser hydroxymethyltransferase complex. {ECO:0000269|PubMed:18628352}. ARA:GQT-82-MONOMER; 3.5.1.10 37296,36452,28915,26506 Formyltetrahydrofolate deformylase 2, mitochondrial (EC 3.5.1.10),Formyltetrahydrofolate deformylase 1, mitochondrial (EC 3.5.1.10),Formyl transferase mitochondrion [GO:0005739]; formyltetrahydrofolate deformylase activity [GO:0008864]; hydroxymethyl-, formyl- and related transferase activity [GO:0016742]; 'de novo' IMP biosynthetic process [GO:0006189]; one-carbon metabolic process [GO:0006730]; photorespiration [GO:0009853]; tetrahydrofolate metabolic process [GO:0046653],formyltetrahydrofolate deformylase activity [GO:0008864]; hydroxymethyl-, formyl- and related transferase activity [GO:0016742]; 'de novo' IMP biosynthetic process [GO:0006189] TISSUE SPECIFICITY: Expressed in leaves, cotyledons, roots, seeds and flowers. {ECO:0000269|PubMed:18628352}. locus:2130893;,locus:505006677; AT4G17360,AT5G47435 formyltetrahydrofolate Formyl transferase family protein, expressed (Os03g0102100 protein) (cDNA clone:J023089B21, full insert sequence),(RAP Annotation release2) Formyltetrahydrofolate deformylase family protein ((Rice Genome Annotation Project) formyltetrahydrofolate deformylase) (Formyl transferase family protein, expressed) (Os03g0102100 protein) Q10T41,Q10T42 Q10T41_ORYSJ,Q10T42_ORYSJ Os03g0102100 LOC_Os03g01222 OSNPB_030102100,Os03g0102100 LOC_Os03g01222 Os03g0102100 OsJ_09062 OSNPB_030102100 ENOG411EKZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prefoldin subunit NA NA NA NA NA NA NA ENOG411EKZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EKZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prefoldin subunit NA NA NA NA NA NA NA ENOG411EKZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain OJ1485_B09.7 protein (Os01g0921500 protein) (Putative AKIN gamma) Q8RZI9 Q8RZI9_ORYSJ OJ1485_B09.7 Os01g0921500 B1793G04.20 OSNPB_010921500 ENOG411EKZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: CBS domain-containing protein NA NA NA NA NA NA NA ENOG411EKZJ A0A1I9LQ65,A0A1I9LQ66,A0A1I9LQ67,F4J0L9 A0A1I9LQ65_ARATH,A0A1I9LQ66_ARATH,A0A1I9LQ67_ARATH,F4J0L9_ARATH Vacuolar protein sorting-associated protein, putative (DUF1162) 350696,273863,349800,343750 Vacuolar protein sorting-associated protein, putative (DUF1162) locus:2074810; AT3G50380 Protein of unknown function (DUF1162) NA NA NA NA NA NA NA ENOG411EKZK PV42B,CBSX4 Q8GXI9,A0A1P8AMX3 PV42B_ARATH,A0A1P8AMX3_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b (AtPV42b) (AKIN subunit gamma-like PV42b) (CBS domain-containing protein CBSX4),Cystathionine beta-synthase (CBS) family protein DISRUPTION PHENOTYPE: No visible phenotype; probably due to a complementation by PV42b. Shorter siliques and reduced seed sets in pv42a and pv42b RNAi double mutant. {ECO:0000269|PubMed:21533063}. FUNCTION: Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance. {ECO:0000269|PubMed:21533063}. 38525,31870 SNF1-related protein kinase regulatory subunit gamma-like PV42b (AtPV42b) (AKIN subunit gamma-like PV42b) (CBS domain-containing protein CBSX4),Cystathionine beta-synthase (CBS) family protein embryo sac development [GO:0009553]; stamen development [GO:0048443] TISSUE SPECIFICITY: Expressed highly in rosette leaves, cauline leaves, open flowers, developing siliques and dry seeds, but at a low level in stems and floral buds. {ECO:0000269|PubMed:21533063}. AT1G80090 CBS domain NA NA NA NA NA NA NA ENOG411EKZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: importin NA NA NA NA NA NA NA ENOG411EKZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dDENN domain NA NA NA NA NA NA NA ENOG411EKZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKZT KING1 Q8LBB2 KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1 (AKIN subunit gamma-1) (AKING1) (AKINgamma1) (CBS domain-containing protein CBSCBS1) FUNCTION: Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase. 47423 SNF1-related protein kinase regulatory subunit gamma-1 (AKIN subunit gamma-1) (AKING1) (AKINgamma1) (CBS domain-containing protein CBSCBS1) plant-type cell wall [GO:0009505]; ATP binding [GO:0005524]; catalytic activity [GO:0003824]; protein kinase regulator activity [GO:0019887]; carbohydrate metabolic process [GO:0005975]; fatty acid biosynthetic process [GO:0006633]; nitrate assimilation [GO:0042128] TISSUE SPECIFICITY: Expressed in vegetative organs and, to lower extent, in reproductive organs. {ECO:0000269|PubMed:10417704}. locus:2114475; AT3G48530 snf1-related protein kinase regulatory subunit OSJNBa0072D21.10 protein (Os04g0382300 protein) (cDNA clone:J013063J16, full insert sequence) (cDNA clone:J033066B14, full insert sequence),Os04g0380000 protein,Os04g0382300 protein (Fragment) Q7XVC0,A0A0P0W9F4,A0A0P0W9D5 Q7XVC0_ORYSJ,A0A0P0W9F4_ORYSJ,A0A0P0W9D5_ORYSJ Os04g0382300 Os04g0382300 OSJNBa0072D21.10 OSNPB_040382300,Os04g0380000 OSNPB_040380000,Os04g0382300 OSNPB_040382300 ENOG411EKZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF1-related protein kinase regulatory subunit Os01g0633400 protein (Putative YZ1) (cDNA clone:002-153-F10, full insert sequence) Q5VNT2 Q5VNT2_ORYSJ Os01g0633400 OSNPB_010633400 P0663E10.12 ENOG411EKZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain Os02g0158900 protein (Putative SNF4b) Q6ETI3 Q6ETI3_ORYSJ Os02g0158900 B1103G11.22 OSNPB_020158900 ENOG411EKZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF1-related protein kinase regulatory subunit Os05g0364650 protein (Fragment) A0A0P0WLE8 A0A0P0WLE8_ORYSJ Os05g0364650 OSNPB_050364650 ENOG411EKZQ CBSX6 Q8GZA4 CBSX6_ARATH CBS domain-containing protein CBSX6 46555 CBS domain-containing protein CBSX6 integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773] locus:2206265; AT1G65320 CBS domain-containing protein NA NA NA NA NA NA NA ENOG411EKZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os01g0906600 protein (cDNA clone:J023128D23, full insert sequence) Q5N719 Q5N719_ORYSJ Os01g0906600 B1417F08.12 OSNPB_010906600 ENOG411EKZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metallo-beta-lactamase superfamily NA NA NA NA NA NA NA ENOG411EKZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411EKZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain Arsenate reductase 2.2 (OsACR2.2) (EC 1.20.4.1) (Dual specificity phosphatase CDC25.2) (Sulfurtransferase 21) (OsStr21) Q10SX6 ACR22_ORYSJ ACR2.2 CDC25.2 STR21 Os03g0108000 LOC_Os03g01770 FUNCTION: Possesses arsenate reductase activity in vitro. Catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)]. May play a role in arsenic retention in roots. {ECO:0000269|PubMed:17388894}.; FUNCTION: Possesses phosphatase activity towards p-nitrophenyl phosphate in vitro. {ECO:0000269|PubMed:17388894}. ENOG411EKZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP-2 sterol transfer family Os02g0765800 protein (Sterol carrier protein 2-like) Q6Z316 Q6Z316_ORYSJ Os02g0765800 OJ1004_A11.14 OsJ_08500 OSNPB_020765800 P0539D10.33 ENOG411EKZ5 TRM82 Q93WD7 Q93WD7_ARATH tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit (WD repeat-containing protein 4 homolog) FUNCTION: Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. {ECO:0000256|HAMAP-Rule:MF_03056}. PATHWAY: tRNA modification; N(7)-methylguanine-tRNA biosynthesis. {ECO:0000256|HAMAP-Rule:MF_03056}. 46444 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit (WD repeat-containing protein 4 homolog) cytosol [GO:0005829]; nucleus [GO:0005634]; tRNA methyltransferase complex [GO:0043527]; 7-methylguanosine metabolic process [GO:0008618]; tRNA (guanine-N7)-methylation [GO:0106004]; tRNA modification [GO:0006400] locus:2007539; AT1G03110 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKZ2 B4F7P0,A0A1P8AVN1,F4I261,F4I262,F4I259 B4F7P0_ARATH,A0A1P8AVN1_ARATH,F4I261_ARATH,F4I262_ARATH,F4I259_ARATH At1g69526 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein R-ATH-6798695; 22241,28380,34158,25836,26508 At1g69526 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:505006214;,locus:2007201; AT1G69526,AT1G69520 Hypothetical methyltransferase As(III) methyltransferase (Os02g0744100 protein) (UbiE/COQ5 methyltransferase-like) (cDNA clone:006-212-E04, full insert sequence) Q6Z2U2 Q6Z2U2_ORYSJ Os02g0744100 ArsM3 Os02g0744100 OJ1734_E02.27 OsJ_08357 OSNPB_020744100 ENOG411EKZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA biogenesis of lysosome-related organelles complex 1 subunit Os02g0190900 protein (Phytoene dehydrogenase-like protein) (cDNA clone:002-175-A09, full insert sequence) Q6YUT9 Q6YUT9_ORYSJ Os02g0190900 Os02g0190900 OsJ_05704 OSJNBb0031B09.27 OSNPB_020190900 P0453H10.2 ENOG411EKZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative serine esterase (DUF676) Expressed protein (Os03g0726800 protein) (Putative serine esterase) (Serine esterase family protein, expressed) (cDNA clone:J033058M21, full insert sequence) Q75GJ0 Q75GJ0_ORYSJ OSJNBb0122C16.16 Os03g0726800 LOC_Os03g51670 OSJNBa0013A09.7 OSNPB_030726800 ENOG411EKZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiE/COQ5 methyltransferase family NA NA NA NA NA NA NA ENOG411EKZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain Arsenate reductase 2.1 (OsACR2.1) (EC 1.20.4.1) (Dual specificity phosphatase CDC25.1) (Sulfurtransferase 20) (OsStr20),Os10g0545700 protein,Os10g0545700 protein (Fragment) Q336V5,A0A0P0XX83,A0A0P0XWT3 ACR21_ORYSJ,A0A0P0XX83_ORYSJ,A0A0P0XWT3_ORYSJ ACR2.1 CDC25.1 STR20 Os10g0545700 LOC_Os10g39860 OsJ_32347 OSJNBa0001O14.6,Os10g0545700 OSNPB_100545700 FUNCTION: Possesses arsenate reductase activity in vitro. Catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)]. May play a role in arsenic retention in roots. {ECO:0000269|PubMed:17388894}.; FUNCTION: Possesses phosphatase activity towards p-nitrophenyl phosphate in vitro. {ECO:0000269|PubMed:17388894}. ENOG411EKZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA arsenate reductase activity NA NA NA NA NA NA NA ENOG411DV2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon Os08g0280600 protein (Fragment) A0A0P0XEB6 A0A0P0XEB6_ORYSJ Os08g0280600 OSNPB_080280600 ENOG411DV2E CYP704A2,CYP704A1 O64631,F4IV33,F4IV34 O64631_ARATH,F4IV33_ARATH,F4IV34_ARATH At2g45510 (Cytochrome P450, family 704, subfamily A, polypeptide 2) (Putative cytochrome P450),Cytochrome P450, family 704, subfamily A, polypeptide 1 ARA:GQT-721-MONOMER; 59057,56408,58603 At2g45510 (Cytochrome P450, family 704, subfamily A, polypeptide 2) (Putative cytochrome P450),Cytochrome P450, family 704, subfamily A, polypeptide 1 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2043634;,locus:2054960; AT2G45510,AT2G44890 cytochrome P450 Cytochrome P450 (Os06g0129900 protein) (Putative cytochrome P450) (cDNA clone:J013057B08, full insert sequence),Os06g0129900 protein (Fragment) Q658G9,A0A0P0WRU9 Q658G9_ORYSJ,A0A0P0WRU9_ORYSJ Os06g0129900 OsJ_19990 OSNPB_060129900 P0538C01.25,Os06g0129900 OSNPB_060129900 ENOG411DV2F HUB1,HUB2 Q8RXD6,Q9C895,A0A1P8AYB9,F4I080 BRE1A_ARATH,BRE1B_ARATH,A0A1P8AYB9_ARATH,F4I080_ARATH E3 ubiquitin-protein ligase BRE1-like 1 (AtBRE1) (EC 2.3.2.27) (Protein HISTONE MONOUBIQUITINATION 1) (AtHUB1) (Protein REDUCED DORMANCY 4) (RING-type E3 ubiquitin transferase BRE1-like 1),E3 ubiquitin-protein ligase BRE1-like 2 (EC 2.3.2.27) (Protein HISTONE MONOUBIQUITINATION 2) (AtHUB2) (RING-type E3 ubiquitin transferase BRE1-like 2),Histone mono-ubiquitination 1,Histone mono-ubiquitination 2 DISRUPTION PHENOTYPE: Plants have reduced seed dormancy and several pleiotropic phenotypes, including alterations in leaf color, plant architecture and flower morphology. {ECO:0000269|PubMed:17329563, ECO:0000269|PubMed:21799800}.,DISRUPTION PHENOTYPE: Plants have reduced seed dormancy and several pleiotropic phenotypes, including alterations in leaf color, plant architecture and flower morphology. {ECO:0000269|PubMed:17329563}. Double mutant reduced seed dormancy determined by the embryo; increased ability to germinate as freshly harvested seeds compared to each of the monogenic mutants; cumulative effect of the individual mutations suggest that they control different pathways; high capacity to germinate in darkness.,Reduced leaf size and narrow laminae.,The lamina area of mature first and second mutant leaves was reduced to 55% of that of the wild type. The length:width ratio was significantly increased reflecting a much stronger reduction in width than in length of the blade. The mutation also affected rosette growth reducing fresh and dry weight at flowering by 40 and 39% respectively.,The mutant primary roots grew much more slowly than those of the wild type. No differences between mutant and WT were seen regarding cellular organization or cell wall formation in the root apical meristem. However a clear reduction in meristem size was detected. The root growth rate of the mutant was severely reduced and no acceleration of growth took place. The average mature cortex cell length was significantly (P < 0.001) reduced from 171 μm in WT to 104 μm in hub1-1 whereas the cell production per hour had decreased by 65% from 1.26 in Ler to 0.44 in hub1-1.,The number of palisade cells across mutant lamina was 44% that of those in wild type resulting in narrow leaf shape of the mutant. In addition to reduced cell numbers distribution and size of the mesophyll cells were irregular with some enlarged cells and the air spaces were increased.,The stomatal index was consistently reduced in all hub1-1 when compared with Ler samples suggesting that a proportion of leaf epidermal cells of hub1-1 exit the mitotic cell cycle early. The stomatal index (i.e. the fraction of epidermal cells that are guard cells) increased more slowly in hub1-1 than in Ler between 5 and 8 DAS with final values of 0.23 and 0.35 on average for hub1-1 and Ler respectively. As a result in mature leaves of hub1-1 fewer stomata were present a difference that originated at the same time when division rates were changed.,Pleiotropic phenotypes such as pale-green leaf color increased bushy appearance and more open flower buds.,Reduced seed dormancy phenotype.,Reduced seed longevity.,The chlorophyll content index in the mutant is lower than in wild type.,The growth of hub1-2 seedlings on medium without sucrose is severely delayed compared with wild-type seedlings. Addition of 1.5% sucrose to the medium can rescue the delayed development of hub1-2 suggesting a defect in seedling establishment.,Mutant growth was defective compared with that of wild type. The mutants were reduced in size and had pale-green laminas with an irregular blade surface and thinner inflorescence stems but root growth was not visibly reduced. Furthermore the fresh weight of mutant was approximately half of that of wild type.,Slightly reduced seed dormancy compared with wild-type seeds.,The chlorophyll content index of the double mutant did not differ from the single mutants and the germination percentage of freshly harvested seeds was slightly higher than that of the single mutants.,Increased susceptibility to fungal pathogens B. cinerea and A. brassicicola. Early flowering when grown under long days.,The flowering of hub1-4 mutants is accelerated compared to wild type plants under long days and short days. In addition the plants are small and have pale green leaves. Histone2B ubiquitination is lost in hub1-4 mutants. FLC expression is suppressed in these mutants. There are gene-specific changes in the patterns of histone ubiquitination and methylation in this mutant.,The flowering of hub1-5 mutants is accelerated compared to wild type plants under long days and short days. In addition the plants are small and have pale green leaves.,Same phenotypes as the single mutants.,Increased susceptibility to fungal pathogens B. cinerea and A. brassicicola. Early flowering when grown under 12 hour light regime. Reduced thickness of the cell walls.,No new leaf and flower phenotypes were observed compared to the single mutant parents and the biomass of the double mutant lines fell statistically in the same group as that of both single parents.,Reduced leaf size. Leaf shape resembles that of spt16-1 single mutant. Earlier flowering than either single mutant.,Very reduced leaf size.Leaf shape resembles that if ssrp1-2 single mutant.Earlier flowering than either single mutant.,Mutant plants were smaller with pale green laminas and irregular blade surface and their inflorescence stems were thinner than those of the Col stems.,Reduction in the rosette biomass to 43 and 42% of fresh and dry weight of Col respectively and weak but significant (P < 0.001) inhibition of the root growth when the kinetic slopes of hub2-1 and Col were compared.,The flowering of hub2-2 mutants is accelerated compared to wild type plants under long days and short days. In addition the plants are small and have pale green leaves. Histone2B ubiquitination is lost in hub2-2 mutants. Pale green leaves; Abnormal leaf shape; Reduced rosette biomass; Short primary root-M. Van Lijsebettens-2007,Dwarf; Pale green leaves; Irregular leaf blade surface; Thin inflorescence stems; Reduced rosette biomass; Slightly shorter roots; Increased ploidy levels in leaves-M. Van Lijsebettens-2007 FUNCTION: E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens (PubMed:12535538, PubMed:17329565, PubMed:17329563, PubMed:19286969). Involved in the control of seed dormancy and germination (PubMed:21799800). {ECO:0000269|PubMed:17329563, ECO:0000269|PubMed:17329565, ECO:0000269|PubMed:19286969, ECO:0000269|PubMed:21799800}.,FUNCTION: E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. {ECO:0000269|PubMed:17329563}. MISCELLANEOUS: HUB1 and HUB2 are involved in the same processes, but are weakly or not redundant. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 99719,103396,76407,45948 E3 ubiquitin-protein ligase BRE1-like 1 (AtBRE1) (EC 2.3.2.27) (Protein HISTONE MONOUBIQUITINATION 1) (AtHUB1) (Protein REDUCED DORMANCY 4) (RING-type E3 ubiquitin transferase BRE1-like 1),E3 ubiquitin-protein ligase BRE1-like 2 (EC 2.3.2.27) (Protein HISTONE MONOUBIQUITINATION 2) (AtHUB2) (RING-type E3 ubiquitin transferase BRE1-like 2),Histone mono-ubiquitination 1,Histone mono-ubiquitination 2 mitochondrion [GO:0005739]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; ubiquitin-protein transferase activity [GO:0004842]; cell division [GO:0051301]; cell growth [GO:0016049]; defense response to fungus, incompatible interaction [GO:0009817]; histone H2B ubiquitination [GO:0033523]; histone monoubiquitination [GO:0010390]; innate immune response [GO:0045087]; leaf morphogenesis [GO:0009965]; protein monoubiquitination [GO:0006513]; regulation of G2/M transition of mitotic cell cycle [GO:0010389]; seed dormancy process [GO:0010162]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; transferase activity [GO:0016740]; histone H2B ubiquitination [GO:0033523]; histone monoubiquitination [GO:0010390]; innate immune response [GO:0045087]; leaf morphogenesis [GO:0009965]; seed dormancy process [GO:0010162]; vegetative to reproductive phase transition of meristem [GO:0010228],metal ion binding [GO:0046872] DEVELOPMENTAL STAGE: Constant throughout the cell cycle. {ECO:0000269|PubMed:17329565}. TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:17329563, ECO:0000269|PubMed:17329565}. locus:2054997;,locus:2035726; AT2G44950,AT1G55250 E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2 RAD6 E3 ubiquitin-protein ligase BRE1-like 1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRE1-like 1),Os04g0550400 protein (Fragment) Q7XU27,A0A0P0WDG3 BRE1A_ORYSJ,A0A0P0WDG3_ORYSJ BRE1A Os04g0550400 LOC_Os04g46450 OsJ_015032 OSJNBb0034G17.7,Os04g0550400 OSNPB_040550400 FUNCTION: E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. {ECO:0000250|UniProtKB:Q8RXD6}. ENOG411DV2G PGM2 Q9SGC1,O49299,F4I6W4,F4I6W3 PGMC2_ARATH,PGMC1_ARATH,F4I6W4_ARATH,F4I6W3_ARATH Probable phosphoglucomutase, cytoplasmic 2 (PGM 2) (EC 5.4.2.2) (Glucose phosphomutase 2),Probable phosphoglucomutase, cytoplasmic 1 (PGM 1) (EC 5.4.2.2) (Glucose phosphomutase 1),Phosphoglucomutase/phosphomannomutase family protein FUNCTION: This enzyme participates in both the breakdown and synthesis of glucose. {ECO:0000250}. ARA:AT1G70730-MONOMER;,ARA:AT1G23190-MONOMER; R-ATH-3322077;R-ATH-6798695;R-ATH-70221;R-ATH-70370; 5.4.2.2; 5.4.2.2 63482,63171,72558,65566 Probable phosphoglucomutase, cytoplasmic 2 (PGM 2) (EC 5.4.2.2) (Glucose phosphomutase 2),Probable phosphoglucomutase, cytoplasmic 1 (PGM 1) (EC 5.4.2.2) (Glucose phosphomutase 1),Phosphoglucomutase/phosphomannomutase family protein chloroplast stroma [GO:0009570]; stromule [GO:0010319]; magnesium ion binding [GO:0000287]; phosphoglucomutase activity [GO:0004614]; detection of gravity [GO:0009590]; galactose catabolic process [GO:0019388]; glucose metabolic process [GO:0006006]; glycogen biosynthetic process [GO:0005978]; starch biosynthetic process [GO:0019252],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; stromule [GO:0010319]; magnesium ion binding [GO:0000287]; phosphoglucomutase activity [GO:0004614]; carbohydrate metabolic process [GO:0005975]; detection of gravity [GO:0009590]; galactose catabolic process [GO:0019388]; glucose metabolic process [GO:0006006]; glycogen biosynthetic process [GO:0005978]; response to cadmium ion [GO:0046686]; starch biosynthetic process [GO:0019252],apoplast [GO:0048046]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; magnesium ion binding [GO:0000287]; phosphoglucomutase activity [GO:0004614]; carbohydrate metabolic process [GO:0005975]; response to cadmium ion [GO:0046686],intramolecular transferase activity, phosphotransferases [GO:0016868]; magnesium ion binding [GO:0000287]; carbohydrate metabolic process [GO:0005975] locus:2028110;,locus:2033583; AT1G70730,AT1G23190 Phosphoglucomutase Os03g0712700 protein (Phosphoglucomutase) (Phosphoglucomutase, cytoplasmic 2, putative, expressed) (cDNA clone:J023019M17, full insert sequence),Os03g0712700 protein (Fragment) Q9AUQ4,A0A0N7KHX7 Q9AUQ4_ORYSJ,A0A0N7KHX7_ORYSJ OSJNBb0033N16.5 LOC_Os03g50480 Os03g0712700 OsJ_12328 OSNPB_030712700,Os03g0712700 OSNPB_030712700 ENOG411DV2A Q8LFV5 Q8LFV5_ARATH At1g11380 (PLAC8 family protein) 27943 At1g11380 (PLAC8 family protein) integral component of membrane [GO:0016021] locus:2200081; AT1G11380 PLAC8 family NA NA NA NA NA NA NA ENOG411DV2B Q8L814,A0A1P8B941,F4JG06 Q8L814_ARATH,A0A1P8B941_ARATH,F4JG06_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At4g07990),Chaperone DnaJ-domain superfamily protein 25938,23537,27782 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At4g07990),Chaperone DnaJ-domain superfamily protein locus:2120497; AT4G07990 DnaJ domain DnaJ domain containing protein, expressed (Os03g0728100 protein) (Putative DnaJ protein) (cDNA clone:J013127L17, full insert sequence) (cDNA clone:J013163H12, full insert sequence) Q6ATJ1 Q6ATJ1_ORYSJ Os03g0728100 LOC_Os03g51830 Os03g0728100 OSNPB_030728100 ENOG411DV2C PIN5 Q9FFD0,A0A1P8BEE7 PIN5_ARATH,A0A1P8BEE7_ARATH Auxin efflux carrier component 5 (AtPIN5),Auxin efflux carrier component DISRUPTION PHENOTYPE: Defects in lateral root initiation and in root and hypocotyl growth. Increased levels of endogenous free auxin. {ECO:0000269|PubMed:19506555}. Defective in lateral root initiation as well as in root and hypocotyl growth; root growth less sensitive to low concentrations of IAA. Abnormal hypocotyl and root growth; Insensitive to IAA-J. Friml-2009 FUNCTION: Auxin transporter regulating intracellular auxin homeostasis and metabolism (PubMed:19506555, PubMed:20439545). Mediates the auxin transport from the cytosol into the lumen of the endoplasmic reticulum (PubMed:19506555). May also act as an auxin efflux carrier when located to the cell membrane (PubMed:24692422). PIN5 and PIN8 may have an antagonistic/compensatory activity (PubMed:22760640, PubMed:22990451). Involved in unfolded protein response (UPR) activation (PubMed:24180465). Involved in the control of vein patterning (PubMed:24304505). Promotes vein formation (PubMed:26560462). PIN5, PIN6, and PIN8 control vein network geometry, but they are expressed in mutually exclusive domains of leaf vascular cells (PubMed:26560462). {ECO:0000269|PubMed:19506555, ECO:0000269|PubMed:20439545, ECO:0000269|PubMed:22760640, ECO:0000269|PubMed:24180465, ECO:0000269|PubMed:24304505, ECO:0000269|PubMed:26560462, ECO:0000305|PubMed:22990451, ECO:0000305|PubMed:24692422}.,FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000256|RuleBase:RU362108}. 38573,36025 Auxin efflux carrier component 5 (AtPIN5),Auxin efflux carrier component endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin transmembrane transporter activity [GO:0080161]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; intracellular auxin transport [GO:0080162]; pollen development [GO:0009555],integral component of membrane [GO:0016021]; auxin-activated signaling pathway [GO:0009734]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in elongating parts of hypocotyl, cotyledon vasculature and guard cells (PubMed:19506555, PubMed:24692422). Detected in root pericycle and root tip and at later developmental stages in leaves, stems and flowers (PubMed:19506555, PubMed:24692422). Expressed in veins of mature leaves (PubMed:26560462). {ECO:0000269|PubMed:19506555, ECO:0000269|PubMed:24692422, ECO:0000269|PubMed:26560462}. locus:2171392; AT5G16530 auxin efflux carrier component Probable auxin efflux carrier component 5c (OsPIN5c) (OsPIN5b),Probable auxin efflux carrier component 5a (OsPIN5a),Os11g0122800 protein,Os12g0515200 protein Q6ZIB5,Q5JLM1,A0A0P0XYD3,A0A0P0YAS0 PIN5C_ORYSJ,PIN5A_ORYSJ,A0A0P0XYD3_ORYSJ,A0A0P0YAS0_ORYSJ PIN5C Os08g0529000 LOC_Os08g41720 OJ1770_H02.15,PIN5A Os01g0919800 LOC_Os01g69070 P0678F11.27,Os11g0122800 OSNPB_110122800,Os12g0515200 OSNPB_120515200 FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000305}. ENOG411DV2M Q0WPT7 Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic (EC 2.1.1.-) 2.1.1.- 39230 Uncharacterized methyltransferase At2g41040, chloroplastic (EC 2.1.1.-) chloroplast [GO:0009507]; plastoglobule [GO:0010287]; methyltransferase activity [GO:0008168]; response to karrikin [GO:0080167] locus:2063218; AT2G41040 ubiE/COQ5 methyltransferase family Methyltransferase-like (Os06g0646000 protein) (cDNA clone:J013159P17, full insert sequence) Q67W64 Q67W64_ORYSJ Os06g0646000 Os06g0646000 OJ1226_A12.7 OSNPB_060646000 P0017B12.33 ENOG411DV2N MTPB Q6DBM8 MTPB_ARATH Metal tolerance protein B (AtMTP4) (AtMTPb) FUNCTION: Involved in sequestration of excess zinc in the cytoplasm into vacuoles to maintain zinc homeostasis. {ECO:0000250}. R-ATH-264876;R-ATH-435368; 42340 Metal tolerance protein B (AtMTP4) (AtMTPb) integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; metal ion binding [GO:0046872]; zinc ion transmembrane transporter activity [GO:0005385]; regulation of sequestering of zinc ion [GO:0061088]; response to zinc ion [GO:0010043] locus:2043117; AT2G29410 metal tolerance protein NA NA NA NA NA NA NA ENOG411DV2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FES Os02g0496500 protein (Transcriptional activator-like) Q6K6Q6 Q6K6Q6_ORYSJ Os02g0496500 Os02g0496500 OJ1288_D09.7 OSNPB_020496500 P0040H05.40 ENOG411DV2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0693200 protein (Putative benzothiadiazole-induced somatic embryogenesis receptor kinase 1) (cDNA clone:001-202-H11, full insert sequence),Os06g0693200 protein (SERK1 protein-like) Q5Z8L3,Q5Z659 Q5Z8L3_ORYSJ,Q5Z659_ORYSJ P0550B04.14-1 Os06g0693200 OSNPB_060693200,P0532H03.44-2 Os06g0693200 P0550B04.14-2 OSNPB_060693200 ENOG411DV2J F19P19.6 P93812,O22792 P93812_ARATH,O22792_ARATH F19P19.6 protein,Uncharacterized protein At2g33420 115473,116304 F19P19.6 protein,Uncharacterized protein At2g33420 locus:2018339;,locus:2050997; AT1G04470,AT2G33420 CONTAINS InterPro DOMAIN s Munc13 homology 1 (InterPro IPR014770) Protein of Os01g0644500 protein (Fragment),Os02g0796200 protein,Os03g0138600 protein (Fragment) A0A0P0V5U8,A0A0P0VQZ5,A0A0P0VST2 A0A0P0V5U8_ORYSJ,A0A0P0VQZ5_ORYSJ,A0A0P0VST2_ORYSJ Os01g0644500 OSNPB_010644500,Os02g0796200 OSNPB_020796200,Os03g0138600 OSNPB_030138600 ENOG411DV2K RH56,RH15,UAP56a,UAP56b Q9LFN6,Q56XG6,F4JWF3,F4JWF6,F4JWF7 RH56_ARATH,RH15_ARATH,F4JWF3_ARATH,F4JWF6_ARATH,F4JWF7_ARATH DEAD-box ATP-dependent RNA helicase 56 (EC 3.6.4.13) (UAP56 homolog B),DEAD-box ATP-dependent RNA helicase 15 (EC 3.6.4.13) (UAP56 homolog A),DEAD/DEAH box RNA helicase family protein FUNCTION: ATP-dependent RNA helicase involved in pre-mRNA splicing. Required for the export of mRNA out of the nucleus. In addition to ssRNA and dsRNA, binds dsDNA, but not ssDNA. {ECO:0000269|PubMed:23555998}. RNA transport (03013),Spliceosome (03040),Influenza A (05164),mRNA surveillance pathway (03015) 3.6.4.13 48337,39093,55465,52860 DEAD-box ATP-dependent RNA helicase 56 (EC 3.6.4.13) (UAP56 homolog B),DEAD-box ATP-dependent RNA helicase 15 (EC 3.6.4.13) (UAP56 homolog A),DEAD/DEAH box RNA helicase family protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]; cellular response to DNA damage stimulus [GO:0006974]; mRNA export from nucleus [GO:0006406]; mRNA splicing, via spliceosome [GO:0000398]; regulation of gene expression [GO:0010468]; RNA secondary structure unwinding [GO:0010501],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; ATPase activity [GO:0016887]; double-stranded DNA binding [GO:0003690]; double-stranded RNA binding [GO:0003725]; single-stranded DNA binding [GO:0003697]; cellular response to DNA damage stimulus [GO:0006974]; mRNA export from nucleus [GO:0006406]; mRNA splicing, via spliceosome [GO:0000398]; regulation of gene expression [GO:0010468]; response to cadmium ion [GO:0046686]; RNA secondary structure unwinding [GO:0010501],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],cell wall [GO:0005618]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; ATPase activity [GO:0016887]; double-stranded DNA binding [GO:0003690]; double-stranded RNA binding [GO:0003725]; single-stranded DNA binding [GO:0003697] locus:2147987;,locus:2148027; AT5G11200,AT5G11170 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 56 (EC 3.6.4.13) (API5-interacting protein 1),DEAD-box ATP-dependent RNA helicase 15 (EC 3.6.4.13) (API5-interacting protein 1),Os01g0549700 protein (Fragment),Os01g0550000 protein (Fragment) Q0JM17,Q5JK84,A0A0N7KD50,A0A0P0V3V9 RH56_ORYSJ,RH15_ORYSJ,A0A0N7KD50_ORYSJ,A0A0P0V3V9_ORYSJ AIP1 BAT1 Os01g0549700 LOC_Os01g36890 B1156H12.15-1,AIP2 Os01g0550000 LOC_Os01g36920 B1156H12.21-1 OSJNBa0024F24.6-1,Os01g0549700 OSNPB_010549700,Os01g0550000 OSNPB_010550000 FUNCTION: ATP-binding RNA helicase involved in pre-mRNA splicing. Required for the export of mRNA out of the nucleus (By similarity). Required for tapetal programmed cell death (PCD) and degeneration during anther development. Forms dimer with AIP2 and binds the promoter region of the cysteine protease CP1. Can complement the yeast RNA helicase SUB2. Plants silencing AIP1 and AIP2 are male sterile (PubMed:21467577). {ECO:0000250|UniProtKB:Q07478, ECO:0000269|PubMed:21467577}.,FUNCTION: ATP-binding RNA helicase involved in pre-mRNA splicing. Required for the export of mRNA out of the nucleus (By similarity). Required for tapetal programmed cell death (PCD) and degeneration during anther development. Forms dimer with AIP1 and binds the promoter region of the cysteine protease CP1. Can complement the yeast RNA helicase SUB2. Plants silencing AIP1 and AIP2 are male sterile (PubMed:21467577). {ECO:0000250|UniProtKB:Q07478, ECO:0000269|PubMed:21467577}. ENOG411DV2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Basic leucine zipper 19 (OsbZIP19) (bZIP protein 19),Os02g0247100 protein Q6K3R9,A0A0N7KF06 BZP19_ORYSJ,A0A0N7KF06_ORYSJ BZIP19 Os02g0247100 LOC_Os02g14910 OSJNBa0090H18.24,Os02g0247100 OSNPB_020247100 FUNCTION: Transcription regulator. {ECO:0000250}. ENOG411DV2U DTX53 Q9ZVH5 DTX53_ARATH Protein DETOXIFICATION 53 (AtDTX53) (Multidrug and toxic compound extrusion protein 53) (MATE protein 53) R-ATH-425366; 52534 Protein DETOXIFICATION 53 (AtDTX53) (Multidrug and toxic compound extrusion protein 53) (MATE protein 53) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:2064138; AT2G38510 Multidrug and toxin extrusion protein NA NA NA NA NA NA NA ENOG411DV2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os05g0153400 protein (cDNA clone:002-138-C07, full insert sequence) Q65XP2 Q65XP2_ORYSJ Os05g0153400 OsJ_17161 OSJNBa0059G01.1 OSJNBa0072C16.19 OSNPB_050153400 ENOG411DV2W POP1 A0A1P8B0J2,F4IL30,F4IL31 A0A1P8B0J2_ARATH,F4IL30_ARATH,F4IL31_ARATH Ribonuclease Ps 84829,92565,73784 Ribonuclease Ps ribonuclease P activity [GO:0004526]; tRNA 5'-leader removal [GO:0001682],nucleolar ribonuclease P complex [GO:0005655]; ribonuclease MRP complex [GO:0000172]; ribonuclease MRP activity [GO:0000171]; ribonuclease P activity [GO:0004526]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; rRNA processing [GO:0006364],ribonuclease P activity [GO:0004526]; RNA processing [GO:0006396] locus:2065175; AT2G47300 Ribonucleases P MRP protein subunit POP1 containing protein expressed Os11g0677425 protein (Fragment),Os11g0677500 protein A0A0P0Y5Z1,A0A0N7KTC5 A0A0P0Y5Z1_ORYSJ,A0A0N7KTC5_ORYSJ Os11g0677425 OSNPB_110677425,Os11g0677500 OSNPB_110677500 ENOG411DV2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PQQ enzyme repeat NA NA NA NA NA NA NA ENOG411DV2Q KO Q93ZB2 KO1_ARATH Ent-kaurene oxidase, chloroplastic (AtKO1) (EC 1.14.13.78) (Cytochrome P450 701A3) Very low germination rate; Dwarf; Short, dark green leaves; Abnormal flower morphology; Reduced fertility-E. Dennis-1998 FUNCTION: Catalyzes three successive oxidations of the 4-methyl group of ent-kaurene giving kaurenoic acid, a key step in gibberellins (GAs) biosynthesis. GAs, which are involved many processes, including stem elongation, play a central role in plant development. {ECO:0000269|PubMed:20698828, ECO:0000269|PubMed:9671797}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. MetaCyc:AT5G25900-MONOMER; 1.14.13.78; 1.14.13.78 58160 Ent-kaurene oxidase, chloroplastic (AtKO1) (EC 1.14.13.78) (Cytochrome P450 701A3) chloroplast outer membrane [GO:0009707]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ent-kaur-16-en-19-al oxidase activity [GO:0052617]; ent-kaur-16-en-19-ol oxidase activity [GO:0052616]; ent-kaurene oxidase activity [GO:0052615]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; ent-kaurene oxidation to kaurenoic acid [GO:0010241]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686] TISSUE SPECIFICITY: Widely expressed. Highly expressed in influorescence tissues. In germinating seeds, it is mainly localized in the cortex and endodermis of embryo axis. {ECO:0000269|PubMed:11737781, ECO:0000269|PubMed:9671797}. locus:2180572; AT5G25900 Ent-kaurene oxidase Ent-sandaracopimaradiene 3-hydroxylase (EC 1.14.14.70) (Cytochrome P450 701A8) (Ent-kaurene oxidase 4) (OsKO4) (Ent-kaurene oxidase-like 4) (OsKOL4) (OsKOS1) (Syn-pimaradiene 3-monooxygenase) (EC 1.14.14.68),Ent-kaurene oxidase 2 (OsKO2) (EC 1.14.13.78) (Cytochrome P450 701A6) (Ent-kaurene oxidase-like 2) (OsKOL2) (OsKOS3) (Protein DWARF 35),Ent-kaurene oxidase-like protein 1 (OsKOL1) (Cytochrome P450 701A7),Ent-kaurene oxidase-like 3 (OsKOL3) (EC 1.14.13.-) (Cytochrome P450 701A19) (Ent-kaurene oxidase 1) (OsKO1) (OsKOS4),Ent-kaurene oxidase-like 5 (OsKOL5) (EC 1.14.13.-) (Cytochrome P450 701A9) (Ent-kaurene oxidase 5) (OsKO5) (OsKOS2),Os06g0570566 protein Q0DBF4,Q5Z5R4,C7J3A2,Q5Z5R7,Q5Z5S6,A0A0P0WY46 C7018_ORYSJ,C7016_ORYSJ,C7017_ORYSJ,C701S_ORYSJ,C7019_ORYSJ,A0A0P0WY46_ORYSJ CYP701A8 KO1 Os06g0569500 LOC_Os06g37300 OSJNBa0062E01.27,CYP701A6 D35 Os06g0570100 LOC_Os06g37364 OSJNBa0062E01.38,CYP701A7 KO1 KOL1 Os06g0570600,CYP701A19 Os06g0569900 LOC_Os06g37330 OSJNBa0062E01.34,CYP701A9 Os06g0568600 LOC_Os06g37224 OSJNBa0062E01.13,Os06g0570566 OSNPB_060570566 DISRUPTION PHENOTYPE: Semi-dwarf phenotype. {ECO:0000269|PubMed:15316288}. FUNCTION: Catalyzes the hydroxylation of ent-sandaracopimaradiene at the C3alpha position to produce ent-3beta-hydroxy-sandaracopimaradiene, an intermediates for the biosynthesis of oryzalexin D and oryzalexin E phytoalexins (PubMed:22247270, PubMed:23795884). Catalyzes the hydroxylation of ent-cassadiene at the C3alpha position to produce 3alpha-hydroxy-ent-cassadiene, which may be an intermediate for the biosynthesis of phytocassane phytoalexins (PubMed:22247270). Catalyzes the hydroxylation of syn-pimaradiene (9-beta-pimara-7,15-diene) at the C3beta position to produce 3-beta-syn-pimaradiene (PubMed:25758958). Can hydroxylate ent-kaurene in vitro, but the product is not ent-kauren-19-ol as expected for ent-kaurene oxidase activity (PubMed:22247270). {ECO:0000269|PubMed:22247270, ECO:0000269|PubMed:23795884, ECO:0000269|PubMed:25758958}.,FUNCTION: Catalyzes three successive oxidations of the 4-methyl group of ent-kaurene giving kaurenoic acid, a key step in gibberellins (GAs) biosynthesis. GAs, which are involved many processes, including stem elongation, play a central role in plant development. {ECO:0000269|PubMed:15316288, ECO:0000269|PubMed:22247270, ECO:0000269|PubMed:22487175}.,FUNCTION: May hydroxylate diterpenes. {ECO:0000305}.,FUNCTION: May hydroxylate diterpenes. {ECO:0000305|PubMed:22247270}. ENOG411DV2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7) Q5Z7J2,Q5Z7K0 Q5Z7J2_ORYSJ,Q5Z7K0_ORYSJ Os06g0547400 prx86 Os06g0547400 OsJ_21628 OSJNBa0016D02.28 OSNPB_060547400,prx88 Os06g0546500 OSJNBa0016D02.15 OSNPB_060546500 ENOG411DV2S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os06g0149100 protein (Fragment) A0A0P0WSV9 A0A0P0WSV9_ORYSJ Os06g0149100 OSNPB_060149100 ENOG411DV2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gar1/Naf1 RNA binding region Os05g0502800 protein (cDNA clone:J013020M22, full insert sequence) Q60EI5 Q60EI5_ORYSJ Os05g0502800 Os05g0502800 OSJNBa0017K09.13 OSNPB_050502800 ENOG411DV2Y RNU1 Q42404 RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (U1-70K) (snRNP70) FUNCTION: Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA. R-ATH-72163; 50388 U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (U1-70K) (snRNP70) commitment complex [GO:0000243]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; mRNA binding [GO:0003729]; U1 snRNA binding [GO:0030619]; mRNA splicing, via spliceosome [GO:0000398] TISSUE SPECIFICITY: Ubiquitous. locus:2101714; AT3G50670 U1 small nuclear ribonucleoprotein Os10g0115600 protein (Transposon protein, putative, CACTA, En/Spm sub-class, expressed),Os10g0115600 protein (U1 small nuclear ribonucleoprotein 70K splice variant 1) (U1 small nuclear ribonucleoprotein 70K splice variant 2) Q33BE1,Q2EIG9 Q33BE1_ORYSJ,Q2EIG9_ORYSJ Os10g0115600 LOC_Os10g02630 Os10g0115600 OSNPB_100115600,Os10g0115600 OSNPB_100115600 ENOG411DV2Z A0A1P8B785,F4JN67 A0A1P8B785_ARATH,F4JN67_ARATH SGNH hydrolase-type esterase superfamily protein 45531,45076 SGNH hydrolase-type esterase superfamily protein hydrolase activity, acting on ester bonds [GO:0016788] locus:2123456; AT4G10950 GDSL-like Lipase/Acylhydrolase Os02g0290900 protein (Putative GDSL-lipase) Q6K877 Q6K877_ORYSJ Os02g0290900 OJ1086_G08.9 OsJ_06317 OSNPB_020290900 ENOG411DV24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0651400 protein,Os04g0483400 protein (Fragment) Q6YSD6,A0A0P0WBH3 Q6YSD6_ORYSJ,A0A0P0WBH3_ORYSJ Os07g0651400 OSJNBa0030A22.23 OSJNBa0084D17.48 OSNPB_070651400,Os04g0483400 OSNPB_040483400 ENOG411DV25 Q680K8 Y1576_ARATH BTB/POZ domain-containing protein At1g55760 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 37669 BTB/POZ domain-containing protein At1g55760 cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2020522; AT1G55760 BTB POZ domain-containing protein Os08g0495500 protein (POZ domain protein family-like) (cDNA clone:J023093I21, full insert sequence) Q6Z5C8 Q6Z5C8_ORYSJ Os08g0495500 Os08g0495500 B1142B04.23 OsJ_27791 OSNPB_080495500 ENOG411DV26 SETH3 Q9M1T1 SETH3_ARATH Probable arabinose 5-phosphate isomerase (API) (EC 5.3.1.13) (CBS domain-containing protein CBSSIS1) Complete male gametophyte defective-D. Twell-2004 FUNCTION: Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P). {ECO:0000250}. ARA:AT3G54690-MONOMER;MetaCyc:AT3G54690-MONOMER; 5.3.1.13 37749 Probable arabinose 5-phosphate isomerase (API) (EC 5.3.1.13) (CBS domain-containing protein CBSSIS1) cytoplasm [GO:0005737]; arabinose-5-phosphate isomerase activity [GO:0019146]; ATP binding [GO:0005524]; IMP dehydrogenase activity [GO:0003938]; carbohydrate metabolic process [GO:0005975]; GTP biosynthetic process [GO:0006183] locus:2102440; AT3G54690 SIS domain Os02g0158300 protein (Putative polysialic acid capsule expression protein) Q6ET44 Q6ET44_ORYSJ Os02g0158300 Os02g0158300 B1103G11.16 OSNPB_020158300 P0419H03.36 ENOG411DV27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-acyltransferase Diacylglycerol O-acyltransferase 1-1 (OsDGAT1-1) (EC 2.3.1.20) Q5I396 DAT11_ORYSJ DGAT1-1 DAGAT Os05g0196800 LOC_Os05g10810 P0617H07.12 P0636E04.4 FUNCTION: Involved in triacylglycerol (TAG) synthesis. Catalyzes the acylation of the sn-3 hydroxy group of sn-1,2-diacylglycerol using acyl-CoA. {ECO:0000250|UniProtKB:Q5GKZ7}. ENOG411DV20 Q9LTX4,A0A1P8BDK3,A0A1P8BDJ3 POLLU_ARATH,A0A1P8BDK3_ARATH,A0A1P8BDJ3_ARATH Probable ion channel POLLUX (AtPOLLUX) (Probable ion channel DMI1),Ion channel protein MISCELLANEOUS: The absence of an ortholog of CASTOR may explain the inability of Arabidopsis to form root symbioses with mycorrhizal fungi. 92237,71527,70671 Probable ion channel POLLUX (AtPOLLUX) (Probable ion channel DMI1),Ion channel protein integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; ion transport [GO:0006811],integral component of membrane [GO:0016021] locus:2158799; AT5G49960 Ion channel Probable ion channel POLLUX (OsPOLLUX) (Probable ion channel DMI1),Probable ion channel CASTOR (OsCASTOR) (Probable ion channel DMI1-like),Os01g0870100 protein Q5N941,Q75LD5,A0A0N7KE50 POLLU_ORYSJ,CASTO_ORYSJ,A0A0N7KE50_ORYSJ Os01g0870100 LOC_Os01g64980 P0039A07.9 P0677H08.41,Os03g0843600 LOC_Os03g62650 OSJNBa0032G11.8,Os01g0870100 OSNPB_010870100 DISRUPTION PHENOTYPE: Defective in mycorrhizal symbiosis. {ECO:0000269|PubMed:18852152, ECO:0000269|PubMed:18978069}.,DISRUPTION PHENOTYPE: Defective in mycorrhizal symbiosis. {ECO:0000269|PubMed:18978069}. FUNCTION: Required for mycorrhizal symbiosis. {ECO:0000269|PubMed:18852152, ECO:0000269|PubMed:18978069}. MISCELLANEOUS: Can restore nodulation but not rhizobial infection to a Medicago truncatula dmi1 mutant, but cannot restore mycorrhizal or rhizobial symbiosis in a Ljpollux mutant of Lotus japonicus.,MISCELLANEOUS: Can restore mycorrhizal and rhizobial symbiosis in a Ljcastor mutant of Lotus japonicus. ENOG411DV21 ATJ49 Q9FH28 DNJ49_ARATH Chaperone protein dnaJ 49 (AtDjC49) (AtJ49) FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 41223 Chaperone protein dnaJ 49 (AtDjC49) (AtJ49) integral component of membrane [GO:0016021] locus:2155184; AT5G49060 chaperone protein DnaJ Os05g0364500 protein (Fragment) A0A0P0WLE7 A0A0P0WLE7_ORYSJ Os05g0364500 OSNPB_050364500 ENOG411DV22 MLO9,MLO5,MLO8 Q94KB4,O22815,O22757,A0A1P8ASU6 MLO9_ARATH,MLO5_ARATH,MLO8_ARATH,A0A1P8ASU6_ARATH MLO-like protein 9 (AtMlo9),MLO-like protein 5 (AtMlo5),MLO-like protein 8 (AtMlo8),Seven transmembrane MLO family protein FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}. 53210,56896,67212,43823 MLO-like protein 9 (AtMlo9),MLO-like protein 5 (AtMlo5),MLO-like protein 8 (AtMlo8),Seven transmembrane MLO family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607],integral component of membrane [GO:0016021]; defense response [GO:0006952] locus:2036650;,locus:2051073;,locus:2053888; AT1G42560,AT2G33670,AT2G17480 May be involved in modulation of pathogen defense and leaf cell death (By similarity) MLO-like protein (Fragment),Os05g0183300 protein,Os05g0183200 protein Q0IW12,A0A0P0WIQ7,A0A0N7KK94 Q0IW12_ORYSJ,A0A0P0WIQ7_ORYSJ,A0A0N7KK94_ORYSJ Os10g0541000 MLO OSNPB_100541000,Os05g0183300 OSNPB_050183300,Os05g0183200 OSNPB_050183200 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. ENOG411DV23 A0A1P8BBQ3,F4K727 A0A1P8BBQ3_ARATH,F4K727_ARATH Tryptophan synthase (EC 4.2.1.20) PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5. {ECO:0000256|RuleBase:RU003663}. 4.2.1.20 47914,50645 Tryptophan synthase (EC 4.2.1.20) tryptophan synthase activity [GO:0004834],cytoplasm [GO:0005737]; tryptophan synthase activity [GO:0004834]; tryptophan biosynthetic process [GO:0000162] locus:1006230667; AT5G28237 tryptophan synthase beta NA NA NA NA NA NA NA ENOG411DV28 LPAT5,LPAT4 Q9LHN4,Q8L4Y2,F4J9W3,A0A1I9LQD2 LPAT5_ARATH,LPAT4_ARATH,F4J9W3_ARATH,A0A1I9LQD2_ARATH Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 5),Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 4),Lysophosphatidyl acyltransferase 5 FUNCTION: May convert lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position (By similarity). Has no activity when expressed in bacteria or yeast. {ECO:0000250}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 2/3. ARA:AT3G18850-MONOMER;,ARA:AT1G75020-MONOMER; R-ATH-1482798;R-ATH-1483166; 2.3.1.51; 2.3.1.51 43490,43064,40915,28039 Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 5),Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 4),Lysophosphatidyl acyltransferase 5 integral component of membrane [GO:0016021]; 1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; CDP-diacylglycerol biosynthetic process [GO:0016024],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746]; metabolic process [GO:0008152],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746] TISSUE SPECIFICITY: Widely expressed at low level. {ECO:0000269|PubMed:15772283}. locus:2087916;,locus:2027196; AT3G18850,AT1G75020 acyltransferase Os05g0502200 protein (Putative 1-acylglycerol-3-phosphate acyltransferase),Os01g0782500 protein (cDNA clone:J033131G20, full insert sequence) Q60EI7,Q0JIR6 Q60EI7_ORYSJ,Q0JIR6_ORYSJ Os05g0502200 Os05g0502200 OSJNBa0017K09.11 OSNPB_050502200,Os01g0782500 Os01g0782500 OsJ_03688 OSNPB_010782500 ENOG411DV29 EMF1 Q9LYD9 EMF1_ARATH Protein EMBRYONIC FLOWER 1 DISRUPTION PHENOTYPE: Abolished rosette shoot development, reduced inflorescence with several flowers lacking petals, and differentiation of the apical meristem from indeterminate to determinate growth by producing a single terminal flower on all nodes. Altered inflorescence-to-flower transition. Degenerated flowers with only carpelloid structures capped with stigmatic papillae but lacking leaves, petals and stamen. Derepressed seed development program. {ECO:0000269|PubMed:10097382, ECO:0000269|PubMed:11487698, ECO:0000269|PubMed:12615941, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:7781888, ECO:0000269|PubMed:9401124, ECO:0000269|PubMed:9615462, ECO:0000269|PubMed:9721681}. Phenotype resembles the emf1-2 single mutant. Semi-open small petiolelessoval shaped cotyledons and short hypocotyl and leaf primordia. Short hypocotyl; Oval cotyledons with no petiole; Very small, sessile rosette leaves; Very short inflorescence stems; Single flower develops; Only carpel-like floral organs form; Severe early flowering; Large SAM-Z. Sung-2001 FUNCTION: Transcription repressor that regulates phase transition during shoot, flower and seeds development. Controls leaves development, shoot architecture and flowering by delaying both the vegetative to reproductive transition and flower initiation. Participates in polycomb group (PcG) protein complex-mediated (including EMF2) silencing of the flower homeotic genes AGAMOUS (AG), PISTILLATA (PI), and APETALA3 (AP3), as well as of some regulatory genes such as ABSCISIC ACID INSENSITIVE3 (ABI3), LONG VEGETATIVE PHASE1 (LOV1), and FLOWERING LOCUS C (FLC) during vegetative development. Required for histone methylation or for maintaining a stable histone methylation (e.g. H3K27me3) pattern of repressed target genes. Can bind non specifically DNA (both double- and single-stranded) and RNA. {ECO:0000269|PubMed:10097382, ECO:0000269|PubMed:11487698, ECO:0000269|PubMed:12615941, ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:19825645, ECO:0000269|PubMed:7781888, ECO:0000269|PubMed:9401124, ECO:0000269|PubMed:9615462, ECO:0000269|PubMed:9721681}. 121671 Protein EMBRYONIC FLOWER 1 nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; histone H3-K27 methylation [GO:0070734]; histone methylation [GO:0016571]; hyperosmotic salinity response [GO:0042538]; meristem determinacy [GO:0010022]; negative regulation of flower development [GO:0009910]; negative regulation of transcription, DNA-templated [GO:0045892]; post-embryonic development [GO:0009791]; shoot system development [GO:0048367] DEVELOPMENTAL STAGE: After flowering, expressed in the stigma and anthers. {ECO:0000269|PubMed:19825645}. TISSUE SPECIFICITY: Expressed in mature embryo, root tips, cotyledons, leaves, stems, shoot apex, and flower clusters, with highest levels in flowers. The presence in the shoot apical meristem (SAM) is required to maintain vegetative development and prevent early flowering. {ECO:0000269|PubMed:11487698, ECO:0000269|PubMed:19825645}. locus:2144241; AT5G11530 embryonic flower 1 NA NA NA NA NA NA NA ENOG411EC7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os01g0872600 protein (Fragment) Q0JHB8 Q0JHB8_ORYSJ Os01g0872600 Os01g0872600 OSNPB_010872600 ENOG411DPVZ Q9LVE6,Q1PEN5,Q8GY71,A0A1P8B441,A0A1I9LQF7,A0A1I9LQF6,A0A1I9LSF2,F4IXM9 Q9LVE6_ARATH,Q1PEN5_ARATH,Q8GY71_ARATH,A0A1P8B441_ARATH,A0A1I9LQF7_ARATH,A0A1I9LQF6_ARATH,A0A1I9LSF2_ARATH,F4IXM9_ARATH Senescence/dehydration-associated protein-like protein,At4g15450 (Senescence/dehydration-associated protein-like protein) (Uncharacterized protein At4g15450/dl3768w) 40455,21240,40984,40244,23541,23200,29733,39009 Senescence/dehydration-associated protein-like protein,At4g15450 (Senescence/dehydration-associated protein-like protein) (Uncharacterized protein At4g15450/dl3768w) locus:2089940;,locus:2089925;,locus:2130160; AT3G21600,AT3G21590,AT4G15450 Senescence-associated protein Os01g0723100 protein (Senescence/dehydration-associated protein-related (ERD7)-like) (cDNA clone:001-022-B06, full insert sequence) Q5JM97 Q5JM97_ORYSJ Os01g0723100 OSNPB_010723100 P0022F10.12 P0690B02.39 ENOG411DPVY T29M8.1 Q9LMB2,F4IE14 Q9LMB2_ARATH,F4IE14_ARATH T29M8.1 protein (Ubiquinone biosynthesis COQ9-like protein),Ubiquinone biosynthesis COQ9-like protein 34341,34412 T29M8.1 protein (Ubiquinone biosynthesis COQ9-like protein),Ubiquinone biosynthesis COQ9-like protein ubiquinone biosynthetic process [GO:0006744],mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; lipid binding [GO:0008289]; ubiquinone biosynthetic process [GO:0006744] locus:2011271; AT1G19140 Ubiquinone biosynthesis protein LOC496049 protein, putative, expressed (Os03g0405100 protein) (cDNA clone:002-147-D11, full insert sequence) Q7Y0E6 Q7Y0E6_ORYSJ LOC_Os03g29180 Os03g0405100 OSJNBb0074M06.9 OSNPB_030405100 ENOG411DPVV Q8S9K9,Q9CAT5,Q9LMU5,Q8LF98,A0A1P8AV44,F4HQ54 Q8S9K9_ARATH,Q9CAT5_ARATH,Q9LMU5_ARATH,Q8LF98_ARATH,A0A1P8AV44_ARATH,F4HQ54_ARATH AT4g03420/F9H3_4,At1g73210 (Uncharacterized protein T18K17.12),At1g17830 (F2H15.6 protein),Plant/protein (DUF789),Uncharacterized protein 35808,36094,38414,35774,28084,35837 AT4g03420/F9H3_4,At1g73210 (Uncharacterized protein T18K17.12),At1g17830 (F2H15.6 protein),Plant/protein (DUF789),Uncharacterized protein locus:2128741;,locus:2197254;,locus:2030883;,locus:2020768; AT4G03420,AT1G73210,AT1G17830,AT1G03610 expressed protein Expressed protein (Os10g0494000 protein) (cDNA clone:001-206-H01, full insert sequence) (cDNA clone:J023097P16, full insert sequence) Q8LNT2 Q8LNT2_ORYSJ OSJNBa0041P03.5 LOC_Os10g35150 Os10g0494000 OsJ_32011 OSNPB_100494000 ENOG411DPVW RPT3 Q9SEI4 PRS6B_ARATH 26S proteasome regulatory subunit 6B homolog (26S protease subunit 6B homolog) (26S proteasome AAA-ATPase subunit RPT3) (Protein BMAA insensitive morphology 409) (Regulatory particle triple-A ATPase subunit 3) Resistant to BMAA (glutamate receptor competitor)-G. Coruzzi-2009 FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. {ECO:0000269|PubMed:19412571}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.6.4.8; 45751 26S proteasome regulatory subunit 6B homolog (26S protease subunit 6B homolog) (26S proteasome AAA-ATPase subunit RPT3) (Protein BMAA insensitive morphology 409) (Regulatory particle triple-A ATPase subunit 3) cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic proteasome complex [GO:0031597]; membrane [GO:0016020]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433] TISSUE SPECIFICITY: Expressed in dark-grown etiolated seedlings, roots, leaves, stems and flowers. locus:2161258; AT5G58290 26S protease regulatory subunit 6B Os02g0325100 protein (Putative 26S proteasome regulatory particle triple-A ATPase subunit3) (cDNA clone:J023091H23, full insert sequence),Os09g0560200 protein (Putative 26S protease regulatory subunit 6B),Os02g0325100 protein (Fragment) Q6Z875,Q653E3,A0A0P0VIA6 Q6Z875_ORYSJ,Q653E3_ORYSJ,A0A0P0VIA6_ORYSJ Os02g0325100 Os02g0325100 OSNPB_020325100 P0476C12.12,Os09g0560200 OJ1065_E04.24 OsJ_30329 OSNPB_090560200 P0635G10.1,Os02g0325100 OSNPB_020325100 ENOG411DPVT GOS12 O22151 GOS12_ARATH Golgi SNAP receptor complex member 1-2 (Golgi SNARE 12 protein) (AtGOS12) FUNCTION: Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811438; 28522 Golgi SNAP receptor complex member 1-2 (Golgi SNARE 12 protein) (AtGOS12) cis-Golgi network [GO:0005801]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi medial cisterna [GO:0005797]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; trans-Golgi network [GO:0005802]; vacuole [GO:0005773]; SNAP receptor activity [GO:0005484]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031]; regulation of vesicle targeting, to, from or within Golgi [GO:0048209]; response to abscisic acid [GO:0009737]; vesicle fusion [GO:0006906] locus:2050847; AT2G45200 Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (By similarity) Golgi SNAP receptor complex member 1 Q6Z2M4 Q6Z2M4_ORYSJ Os02g0126800 OSNPB_020126800 P0482F12.19 FUNCTION: Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. {ECO:0000256|PIRNR:PIRNR027109}. ENOG411DPVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0534300 protein (Fragment),Os07g0534500 protein A0A0N7KNK9,A0A0P0X6Z1 A0A0N7KNK9_ORYSJ,A0A0P0X6Z1_ORYSJ Os07g0534300 OSNPB_070534300,Os07g0534500 OSNPB_070534500 ENOG411DPVN At1g78690p Q9ZV87,A0A1P8AU24,A0A1P8AU09 NAPES_ARATH,A0A1P8AU24_ARATH,A0A1P8AU09_ARATH N-acylphosphatidylethanolamine synthase (NAPE synthase) (EC 2.3.1.-) (Lysoglycerophospholipid acyltransferase) (Monolysocardiolipin acyltransferase),Phospholipid/glycerol acyltransferase family protein FUNCTION: Acyltransferase that catalyzes the N-acylation of phosphatidylethanolamine to form N-acylphosphatidylethanolamine (N-acyl-PE) (e.g. NAPEs containing C16:0, C16:1, C18:0, and C18:1). Mediates also the formation of acylphosphatidylglycerol (acyl-PG) from lysoglycerophospholipid by O-acylation. Uses acyl-CoA as acyl donors. Acylates 1-acyllysophosphatidylethanolamine (1-acyllyso-PE) and 1-acyllysophosphatidylglycerol (1-acyllyso-PG) at the sn-2-position. {ECO:0000269|PubMed:19447891, ECO:0000269|PubMed:21803774}. R-ATH-1482798; 2.3.1.- 31743,23763,22683 N-acylphosphatidylethanolamine synthase (NAPE synthase) (EC 2.3.1.-) (Lysoglycerophospholipid acyltransferase) (Monolysocardiolipin acyltransferase),Phospholipid/glycerol acyltransferase family protein integral component of membrane [GO:0016021]; intrinsic component of membrane [GO:0031224]; plasma membrane [GO:0005886]; O-acyltransferase activity [GO:0008374]; transferase activity, transferring acyl groups [GO:0016746]; glycerophospholipid metabolic process [GO:0006650]; phospholipid biosynthetic process [GO:0008654],transferase activity, transferring acyl groups [GO:0016746]; phospholipid metabolic process [GO:0006644] DEVELOPMENTAL STAGE: In imbibed seeds, accumulates in cotyledons and hypocotyls. In flowers, expressed in the filament of stamens, in the style, and in ovary with eggs of pistil. {ECO:0000269|PubMed:19447891}. TISSUE SPECIFICITY: Essentially present in young tissues. Expressed in roots, cotyledons, leaves, and shoot and root apical meristems. {ECO:0000269|PubMed:19447891}. locus:2037538; AT1G78690 Acyltransferase Os04g0667000 protein (cDNA clone:J023035P22, full insert sequence) Q0J990 Q0J990_ORYSJ Os04g0667000 Os04g0667000 OSNPB_040667000 ENOG411DPVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (S)-2-hydroxy-acid oxidase Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 (EC 1.1.3.15) (Glycolate oxidase 3) (GOX 3) (OsGLO3) (Short chain alpha-hydroxy acid oxidase GLO3) Q7FAS1 GLO3_ORYSJ GLO3 Os04g0623500 LOC_Os04g53210 OsJ_16217 OSJNBa0053K19.8 FUNCTION: Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation (By similarity). {ECO:0000250}. ENOG411DPVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0551800 protein A0A0N7KM95 A0A0N7KM95_ORYSJ Os06g0551800 OSNPB_060551800 ENOG411DPVI TCP3,TCP4 Q9MAH8,Q8LPR5 TCP3_ARATH,TCP4_ARATH Transcription factor TCP3,Transcription factor TCP4 (Protein MATERNAL EFFECT EMBRYO ARREST 35) No visible phenotype. FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.,FUNCTION: Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. 43044,45963 Transcription factor TCP3,Transcription factor TCP4 (Protein MATERNAL EFFECT EMBRYO ARREST 35) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; positive regulation of development, heterochronic [GO:0045962]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; embryo development ending in seed dormancy [GO:0009793]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; positive regulation of development, heterochronic [GO:0045962]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of torpedo-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.,DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. locus:2009595;,locus:2086350; AT1G53230,AT3G15030 Transcription factor Transcription factor PCF5,Os01g0213800 protein (Fragment) Q8LT07,A0A0P0UZL2 PCF5_ORYSJ,A0A0P0UZL2_ORYSJ PCF5 Os01g0213800 LOC_Os01g11550 OsJ_000844 OSJNBa0038J17.21,Os01g0213800 OSNPB_010213800 FUNCTION: Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. ENOG411DPVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os09g0284800 protein,Glycosyltransferase (EC 2.4.1.-) A3BWY0,A0A0P0W2E0 A3BWY0_ORYSJ,A0A0P0W2E0_ORYSJ Os09g0284800 OsJ_28688 OSNPB_090284800,Os03g0693600 OSNPB_030693600 ENOG411DPVD MAF19.19,T27I15_30,T17J13.170,T17J13.160 A0A1P8BCI5,Q9LEX7,A0A1P8BCJ1,Q9M1Q3,Q9M1Q4,Q1G3N0,A0A1P8BCJ7,A0A1P8BCL2,A0A1P8BCI2,A0A1P8BCK2,A0A1P8BCJ8,A0A1P8BCH6,F4JD25,F4K209 A0A1P8BCI5_ARATH,Q9LEX7_ARATH,A0A1P8BCJ1_ARATH,Q9M1Q3_ARATH,Q9M1Q4_ARATH,Q1G3N0_ARATH,A0A1P8BCJ7_ARATH,A0A1P8BCL2_ARATH,A0A1P8BCI2_ARATH,A0A1P8BCK2_ARATH,A0A1P8BCJ8_ARATH,A0A1P8BCH6_ARATH,F4JD25_ARATH,F4K209_ARATH Putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein,Expressed protein (Putative endonuclease or glycosyl hydrolase) (Uncharacterized protein T27I15_30),Putative endonuclease or glycosyl hydrolase (Uncharacterized protein T17J13.170),Putative endonuclease or glycosyl hydrolase (Uncharacterized protein T17J13.160),Putative endonuclease or glycosyl hydrolase 83231,28222,107550,30462,74186,27972,118075,116052,109434,93707,117697,112861,28399,111096 Putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein,Expressed protein (Putative endonuclease or glycosyl hydrolase) (Uncharacterized protein T27I15_30),Putative endonuclease or glycosyl hydrolase (Uncharacterized protein T17J13.170),Putative endonuclease or glycosyl hydrolase (Uncharacterized protein T17J13.160),Putative endonuclease or glycosyl hydrolase peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; regulation of gene expression [GO:0010468],peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468],endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270],integral component of membrane [GO:0016021]; peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; polar nucleus fusion [GO:0010197]; regulation of gene expression [GO:0010468],chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2100957;,locus:2098073;,locus:2098058;,locus:4010713846;,locus:2159381; AT3G60940,AT3G62210,AT3G62200,AT3G61028,AT5G61190 Pfam:DUF88 Os07g0637200 protein Q7XIX3 Q7XIX3_ORYSJ OJ1136_D11.125 Os07g0637200 OsJ_25285 OSNPB_070637200 ENOG411DPVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits (By similarity) Os10g0456950 protein A0A0P0XVF3 A0A0P0XVF3_ORYSJ Os10g0456950 OSNPB_100456950 ENOG411DPVB DRT101 P57750 AGM1_ARATH Phosphoacetylglucosamine mutase (PAGM) (EC 5.4.2.3) (Acetylglucosamine phosphomutase) (DNA-damage-repair/toleration protein DRT101) (N-acetylglucosamine-phosphate mutase) FUNCTION: Interconverts GlcNAc-6-P and GlcNAc-1-P. {ECO:0000250}. PATHWAY: Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate from alpha-D-glucosamine 6-phosphate (route I): step 2/2. ARA:AT5G18070-MONOMER; R-ATH-446210; 5.4.2.3 60391 Phosphoacetylglucosamine mutase (PAGM) (EC 5.4.2.3) (Acetylglucosamine phosphomutase) (DNA-damage-repair/toleration protein DRT101) (N-acetylglucosamine-phosphate mutase) cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; metal ion binding [GO:0046872]; phosphoacetylglucosamine mutase activity [GO:0004610]; carbohydrate metabolic process [GO:0005975]; DNA repair [GO:0006281]; UDP-N-acetylglucosamine biosynthetic process [GO:0006048] locus:2172294; AT5G18070 Phosphoacetylglucosamine Phosphoacetylglucosamine mutase (PAGM) (EC 5.4.2.3) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) Q6ZDQ1 AGM1_ORYSJ Os07g0195400 LOC_Os07g09720 OJ1715_A07.21 OsJ_23435 P0589E08.4 FUNCTION: Interconverts GlcNAc-6-P and GlcNAc-1-P. {ECO:0000250}. ENOG411DPVA ACR10,ACR9 Q9SJM1,O80644 ACR10_ARATH,ACR9_ARATH ACT domain-containing protein ACR10 (Protein ACT DOMAIN REPEATS 10),ACT domain-containing protein ACR9 (Protein ACT DOMAIN REPEATS 9) FUNCTION: May bind amino acids. {ECO:0000303|PubMed:21861936}. 46047,46038 ACT domain-containing protein ACR10 (Protein ACT DOMAIN REPEATS 10),ACT domain-containing protein ACR9 (Protein ACT DOMAIN REPEATS 9) locus:2057936;,locus:2039782; AT2G36840,AT2G39570 ACT domain containing protein expressed Os09g0570900 protein (cDNA clone:J013151F12, full insert sequence),Os05g0113000 protein (cDNA clone:J013095H10, full insert sequence),Os09g0570900 protein (cDNA clone:J023088I05, full insert sequence),Os05g0113000 protein (Fragment) B7EEU6,Q75L16,Q651B4,A0A0P0WH19 B7EEU6_ORYSJ,Q75L16_ORYSJ,Q651B4_ORYSJ,A0A0P0WH19_ORYSJ Os09g0570900 OSNPB_090570900,Os05g0113000 Os05g0113000 OSJNBb0041A22.4 OSNPB_050113000,B1331F11.3-1 Os09g0570900 OSNPB_090570900,Os05g0113000 OSNPB_050113000 ENOG411DPV8 PBE1,PBE2 O23717,Q9LIP2,F4HP14 PSB5A_ARATH,PSB5B_ARATH,F4HP14_ARATH Proteasome subunit beta type-5-A (EC 3.4.25.1) (20S proteasome beta subunit E-1) (Proteasome component E) (Proteasome epsilon-1 chain),Proteasome subunit beta type-5-B (EC 3.4.25.1) (20S proteasome beta subunit E-2) (Proteasome epsilon-2 chain),20S proteasome beta subunit E1 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 29668,29485,32345 Proteasome subunit beta type-5-A (EC 3.4.25.1) (20S proteasome beta subunit E-1) (Proteasome component E) (Proteasome epsilon-1 chain),Proteasome subunit beta type-5-B (EC 3.4.25.1) (20S proteasome beta subunit E-2) (Proteasome epsilon-2 chain),20S proteasome beta subunit E1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603],cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603],proteasome complex [GO:0000502]; proteasome core complex [GO:0005839]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Ubiquitous low levels, higher expression in siliques and flowers. {ECO:0000269|PubMed:9611183}. locus:2079241;,locus:2031855; AT1G13060,AT3G26340 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity Proteasome subunit beta type (EC 3.4.25.1) Q5VMN4 Q5VMN4_ORYSJ Os06g0153800 OSJNBa0085L11.4 OSNPB_060153800 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. ENOG411DPV9 AT4G08810.1 Q9LE45 Q9LE45_ARATH At4g08810/T32A17_120 (Calcium binding protein involved in cryptochrome and phytochrome coaction) (Calcium ion binding protein) (Uncharacterized protein AT4g08810) Sensitive to blue and far-red light-C. Lin-2001 64192 At4g08810/T32A17_120 (Calcium binding protein involved in cryptochrome and phytochrome coaction) (Calcium ion binding protein) (Uncharacterized protein AT4g08810) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; nuclear outer membrane-endoplasmic reticulum membrane network [GO:0042175]; calcium ion binding [GO:0005509]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2138228; AT4G08810 NA Os07g0633600 protein Q8L465,A0A0P0X9M9 Q8L465_ORYSJ,A0A0P0X9M9_ORYSJ P0455H11.104 P0519E12.134 Os07g0633600 OsJ_25258 OSNPB_070633600,Os07g0633600 OSNPB_070633600 ENOG411DPV6 DPE2 Q8RXD9 DPE2_ARATH 4-alpha-glucanotransferase DPE2 (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (Protein DISPROPORTIONATING ENZYME 2) DISRUPTION PHENOTYPE: Dwarf plants with yellowish leaves that accumulate large amounts of maltose. Increased tolerance to cold. {ECO:0000269|PubMed:14593480, ECO:0000269|PubMed:14996213, ECO:0000269|PubMed:15665241, ECO:0000269|PubMed:21242321}. Dwarf. Accumulate a large amount of maltose and starch. Have reduced levels of glucose-1-phosphate glucose-6-phosphate and sucrose at night. Accumulate maltodextrin in the chloroplast.,Elevated levels of maltose hexose but not sucrose.,Leaves of the mutant have a reduced rate of starch degradation at night. The mutant has starch levels comparable to that of wild type at the end of the light period but high levels of starch at the end of the dark period.,Elevated starch content at the end of the dark period.,Grows more slowly than wild type has high starch content at the end of the night and has very high levels of maltose. Dwarf; Elevated maltose and chloroplast starch levels; Elevated sucrose levels at night-T. Sharkey-2004 FUNCTION: Cytosolic alpha-glucanotransferase essential for the cytosolic metabolism of maltose, an intermediate on the pathway by which starch is converted to sucrose in leaves at night. Metabolizes maltose exported from the chloroplast and is specific for beta-maltose. May play a role in freezing tolerance. Temperature drop induces inactivation of DPE2 that leads to rapid accumulation of maltose, a solute that protects cells from freezing damage. {ECO:0000269|PubMed:14996213, ECO:0000269|PubMed:16640603, ECO:0000269|PubMed:17028209, ECO:0000269|PubMed:21242321, ECO:0000269|PubMed:21269731}. ARA:AT2G40840-MONOMER; 2.4.1.25; 2.4.1.25 109777 4-alpha-glucanotransferase DPE2 (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (Protein DISPROPORTIONATING ENZYME 2) cytosol [GO:0005829]; 4-alpha-glucanotransferase activity [GO:0004134]; beta-maltose 4-alpha-glucanotransferase activity [GO:0102500]; heteropolysaccharide binding [GO:0010297]; starch binding [GO:2001070]; maltose catabolic process [GO:0000025]; maltose metabolic process [GO:0000023]; polysaccharide metabolic process [GO:0005976]; starch catabolic process [GO:0005983] locus:2058475; AT2G40840 4-alpha-glucanotransferase 4-alpha-glucanotransferase DPE2 (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (Protein DISPROPORTIONATING ENZYME 2) Q69Q02 DPE2_ORYSJ DPE2 Os07g0662900 LOC_Os07g46790 P0453E03.120 FUNCTION: Cytosolic alpha-glucanotransferase essential for the cytosolic metabolism of maltose, an intermediate on the pathway by which starch is converted to sucrose in leaves at night. {ECO:0000250}. ENOG411DPV7 Q9LS47 Q9LS47_ARATH Calcineurin b subunit (Protein phosphatase 2b regulatory subunit)-like protein (Calcium-binding EF-hand family protein) (Uncharacterized protein At3g18430) 20032 Calcineurin b subunit (Protein phosphatase 2b regulatory subunit)-like protein (Calcium-binding EF-hand family protein) (Uncharacterized protein At3g18430) vacuole [GO:0005773]; calcium ion binding [GO:0005509] locus:2095052; AT3G18430 Calcineurin subunit Os02g0802400 protein (Putative calcineurin B subunit) (cDNA, clone: J100059D20, full insert sequence),Os08g0442300 protein (Putative Calcineurin B subunit) Q69II5,Q6Z8S1 Q69II5_ORYSJ,Q6Z8S1_ORYSJ Os02g0802400 OsJ_08753 OSJNBa0032L17.37 OSNPB_020802400 P0689B12.14,P0708B04.3-1 P0528B09.47-1 Os08g0442300 OsJ_27485 OSNPB_080442300 ENOG411DPV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain containing protein expressed Ap24 (Os01g0657400 protein) Q7XAD7 Q7XAD7_ORYSJ Os01g0657400 OSNPB_010657400 ENOG411DPV2 TL29 P82281,A0A1P8B8Y3,A0A1P8B8W6 TL29_ARATH,A0A1P8B8Y3_ARATH,A0A1P8B8W6_ARATH Thylakoid lumenal 29 kDa protein, chloroplastic (TL29) (EC 1.-.-.-) (AtAPx07) (P29) (Probable L-ascorbate peroxidase 4),Ascorbate peroxidase 4 1.-.-.- 37934,43476,31041 Thylakoid lumenal 29 kDa protein, chloroplastic (TL29) (EC 1.-.-.-) (AtAPx07) (P29) (Probable L-ascorbate peroxidase 4),Ascorbate peroxidase 4 chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to reactive oxygen species [GO:0000302],heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Down-regulated during leaf senescence. {ECO:0000269|PubMed:16034597}. locus:2122333; AT4G09010 Thylakoid lumenal 29 kDa protein Os04g0602100 protein (cDNA clone:J023033M17, full insert sequence),Os04g0602100 protein (Fragment) Q0JAF4,A0A0N7KJM7 Q0JAF4_ORYSJ,A0A0N7KJM7_ORYSJ Os04g0602100 Os04g0602100 OsJ_16043 OSNPB_040602100,Os04g0602100 OSNPB_040602100 ENOG411DPV3 UBC11,UBC30,UBC8,UBC29,UBC10,UBC28,UBC9,UBC12 P35134,Q9FKT3,P35131,Q9SLE4,P35133,Q94F47,P35132,Q9C9Y7,F4KJ37,F4I5C0,F4JKF3 UBC11_ARATH,UBC30_ARATH,UBC8_ARATH,UBC29_ARATH,UBC10_ARATH,UBC28_ARATH,UBC9_ARATH,UBC12_ARATH,F4KJ37_ARATH,F4I5C0_ARATH,F4JKF3_ARATH Ubiquitin-conjugating enzyme E2 11 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 11) (Ubiquitin carrier protein 11) (Ubiquitin-conjugating enzyme E2-17 kDa 11) (Ubiquitin-protein ligase 11),Ubiquitin-conjugating enzyme E2 30 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 30) (Ubiquitin carrier protein 30),Ubiquitin-conjugating enzyme E2 8 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 8) (UBCAT4A) (Ubiquitin carrier protein 8) (Ubiquitin-conjugating enzyme E2-17 kDa 8) (Ubiquitin-protein ligase 8),Ubiquitin-conjugating enzyme E2 29 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 29) (Ubiquitin carrier protein 29),Ubiquitin-conjugating enzyme E2 10 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 10) (Ubiquitin carrier protein 10/12) (Ubiquitin-conjugating enzyme E2-17 kDa 10/12) (Ubiquitin-protein ligase 10/12),Ubiquitin-conjugating enzyme E2 28 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 28) (Ubiquitin carrier protein 28),SUMO-conjugating enzyme UBC9 (EC 2.3.2.-) (RING-type E3 SUMO transferase UBC9) (UBCAT4B) (Ubiquitin carrier protein 9) (Ubiquitin-conjugating enzyme E2 9) (Ubiquitin-conjugating enzyme E2-17 kDa) (Ubiquitin-protein ligase 9),Probable ubiquitin-conjugating enzyme E2 12 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 12),Ubiquitin-conjugating enzyme 10,Ubiquitin-conjugating enzyme 28,Ubiquitin conjugating enzyme 9 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. {ECO:0000269|PubMed:16339806}.,FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.,FUNCTION: Accepts the ubiquitin-like protein SUMO/SMT3 from the E1 complex and catalyzes its covalent attachment to other proteins. Mediates the selective degradation of short-lived and abnormal proteins.,FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}.,PATHWAY: Protein modification; protein sumoylation. R-ATH-174184;R-ATH-5689896;R-ATH-8866652;R-ATH-8866654; 6.3.2.19; 2.3.2.23,2.3.2.- 16551,16480,16533,16759,16537,16510,16553,16710,12239,17490,20212 Ubiquitin-conjugating enzyme E2 11 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 11) (Ubiquitin carrier protein 11) (Ubiquitin-conjugating enzyme E2-17 kDa 11) (Ubiquitin-protein ligase 11),Ubiquitin-conjugating enzyme E2 30 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 30) (Ubiquitin carrier protein 30),Ubiquitin-conjugating enzyme E2 8 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 8) (UBCAT4A) (Ubiquitin carrier protein 8) (Ubiquitin-conjugating enzyme E2-17 kDa 8) (Ubiquitin-protein ligase 8),Ubiquitin-conjugating enzyme E2 29 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 29) (Ubiquitin carrier protein 29),Ubiquitin-conjugating enzyme E2 10 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 10) (Ubiquitin carrier protein 10/12) (Ubiquitin-conjugating enzyme E2-17 kDa 10/12) (Ubiquitin-protein ligase 10/12),Ubiquitin-conjugating enzyme E2 28 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 28) (Ubiquitin carrier protein 28),SUMO-conjugating enzyme UBC9 (EC 2.3.2.-) (RING-type E3 SUMO transferase UBC9) (UBCAT4B) (Ubiquitin carrier protein 9) (Ubiquitin-conjugating enzyme E2 9) (Ubiquitin-conjugating enzyme E2-17 kDa) (Ubiquitin-protein ligase 9),Probable ubiquitin-conjugating enzyme E2 12 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 12),Ubiquitin-conjugating enzyme 10,Ubiquitin-conjugating enzyme 28,Ubiquitin conjugating enzyme 9 ATP binding [GO:0005524]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin-protein transferase activity [GO:0004842]; endosperm development [GO:0009960]; ubiquitin-dependent protein catabolic process [GO:0006511],ATP binding [GO:0005524]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511],ATP binding [GO:0005524]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567],ATP binding [GO:0005524]; transferase activity [GO:0016740]; protein sumoylation [GO:0016925],ATP binding [GO:0005524] DEVELOPMENTAL STAGE: Up-regulated during senescence, but not during the G0 to S phase transition. {ECO:0000269|PubMed:8078482}. TISSUE SPECIFICITY: Ubiquitously expressed. Mainly in petals.,TISSUE SPECIFICITY: Ubiquitously expressed at very low levels. {ECO:0000269|PubMed:16339806}.,TISSUE SPECIFICITY: Highest expression in young stems, old leaves. Lowest levels in floral buds, anthers and young leaves. {ECO:0000269|PubMed:16339806}.,TISSUE SPECIFICITY: Ubiquitously expressed with the highest levels in rosette leaves, roots and petals. {ECO:0000269|PubMed:16339806}.,TISSUE SPECIFICITY: Expressed in seeds, pistils, siliques, hypocotyls and leaves. {ECO:0000269|PubMed:16339806}.,TISSUE SPECIFICITY: Highest expression in young stems and old leaves. Lowest levels in floral buds, anthers and young leaves. {ECO:0000269|PubMed:16339806}. locus:2077773;,locus:2161850;,locus:2160462;,locus:2059904;,locus:2154207;,locus:2077788;,locus:2132977; AT3G08690,AT5G56150,AT5G41700,AT2G16740,AT5G53300,AT1G64230,AT4G27960,AT3G08700 ubiquitin-conjugating enzyme Ubiquitin-conjugating enzyme E2 5B (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 5B) (Ubiquitin carrier protein 5b) (OsUBC5b) (Ubiquitin-protein ligase 5B),Ubiquitin-conjugating enzyme E2 5A (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 5A) (Ubiquitin carrier protein 5a) (OsUBC5a) (Ubiquitin-protein ligase 5A),Os02g0120600 protein (Ubiquitin-conjugating enzyme),Os01g0819500 protein (Fragment),Os09g0293400 protein (Putative ubiquitin-conjugating enzyme) (cDNA clone:001-030-H11, full insert sequence) (cDNA clone:J013047C20, full insert sequence),OSJNBa0043A12.6 protein (Os04g0667800 protein) (Ubiquitin-conjugating enzyme) (cDNA clone:002-157-A01, full insert sequence),Os06g0506600 protein,Os04g0667800 protein (Fragment),Os01g0819400 protein Q8S919,Q8S920,Q6YUS2,Q0JI73,Q69JN7,Q7XR79,A0A0P0WX41,A0A0P0WG60,A0A0P0V9Q4 UBC5B_ORYSJ,UBC5A_ORYSJ,Q6YUS2_ORYSJ,Q0JI73_ORYSJ,Q69JN7_ORYSJ,Q7XR79_ORYSJ,A0A0P0WX41_ORYSJ,A0A0P0WG60_ORYSJ,A0A0P0V9Q4_ORYSJ UBC5B Os02g0261100 LOC_Os02g16040 OsJ_06152 OSJNBb0026F09.5,UBC5A Os01g0658400 LOC_Os01g46926 OsJ_02884,Os02g0120600 Os02g0120600 OJ1020_C02.7 OsJ_05159 OSJNBb0088N06.16 OSNPB_020120600,Os01g0819500 Os01g0819500 OSNPB_010819500,Os09g0293400 B1043F11.37 OsJ_28728 OSNPB_090293400,Os04g0667800 Os04g0667800 OSJNBa0043A12.6 OSNPB_040667800,Os06g0506600 OSNPB_060506600,Os04g0667800 OSNPB_040667800,Os01g0819400 OSNPB_010819400 FUNCTION: E2 conjugating enzyme that associates with the E3 ubiquitin-protein ligase EL5 to mediates ubiquitination of target proteins. {ECO:0000269|PubMed:12028574}. ENOG411DPV0 THG1,THG2 F4IRQ5,F4ISV6,A0A1P8B2C6,A0A1P8B284,A0A1P8B274 THG1_ARATH,THG2_ARATH,A0A1P8B2C6_ARATH,A0A1P8B284_ARATH,A0A1P8B274_ARATH tRNA(His) guanylyltransferase 1 (EC 2.7.7.79),tRNA(His) guanylyltransferase 2 (EC 2.7.7.79),tRNAHis guanylyltransferase FUNCTION: Adds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage. {ECO:0000269|PubMed:20660484}. 2.7.7.79 66218,62676,60854,48846,54210 tRNA(His) guanylyltransferase 1 (EC 2.7.7.79),tRNA(His) guanylyltransferase 2 (EC 2.7.7.79),tRNAHis guanylyltransferase nucleoplasm [GO:0005654]; GTP binding [GO:0005525]; magnesium ion binding [GO:0000287]; tRNA guanylyltransferase activity [GO:0008193]; cell proliferation [GO:0008283]; cellular response to DNA damage stimulus [GO:0006974]; G2/M transition of mitotic cell cycle [GO:0000086]; tRNA modification [GO:0006400]; tRNA processing [GO:0008033],nucleoplasm [GO:0005654]; GTP binding [GO:0005525]; magnesium ion binding [GO:0000287]; tRNA guanylyltransferase activity [GO:0008193]; tRNA modification [GO:0006400]; tRNA processing [GO:0008033],integral component of membrane [GO:0016021]; magnesium ion binding [GO:0000287]; tRNA guanylyltransferase activity [GO:0008193]; tRNA modification [GO:0006400],magnesium ion binding [GO:0000287]; tRNA guanylyltransferase activity [GO:0008193]; tRNA modification [GO:0006400] locus:2065934;,locus:2062611; AT2G31580,AT2G32320 tRNA(His) guanylyltransferase Os05g0535500 protein (Putative tRNA His guanylyltransferase) (cDNA clone:001-117-D02, full insert sequence) Q6L5J0 Q6L5J0_ORYSJ Os05g0535500 OJ1741_B01.4 OSNPB_050535500 ENOG411DZ6D TMK4 Q9LK43 TMK4_ARATH Receptor-like kinase TMK4 (EC 2.7.11.1) (BAK1-associating receptor-like kinase 1) (Leucine-rich repeat receptor-like kinases TMK4) (Transmembrane kinase 4) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:23613767). Tmk2 and tmk4 double mutants, tmk3 and tmk4 double mutants and tmk2, tmk3 and tmk4 triple mutants have no visible phenotypes (PubMed:23613767). Tmk1 and tmk4 double mutants, tmk1, tmk2 and tmk4 triple mutants and tmk1, tmk3 and tmk4 triple mutants have a severe reduction in organ size, a substantial delay in growth and development, and a decrease in fertility (PubMed:23613767). Tmk1, tmk2, tmk3 and tmk4 quadruple mutants are embryo lethal (PubMed:23613767, PubMed:24578577). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:24578577}. FUNCTION: Involved in auxin signal transduction and cell expansion and proliferation regulation (PubMed:23613767). May be involved in brassinosteroid-mediated plant growth and development via auxin regulation (PubMed:23921992). May be involved in microspore and pollen development (PubMed:23921992). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:23921992}. 2.7.11.1 99964 Receptor-like kinase TMK4 (EC 2.7.11.1) (BAK1-associating receptor-like kinase 1) (Leucine-rich repeat receptor-like kinases TMK4) (Transmembrane kinase 4) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers (PubMed:23613767). Ubiquitous, with a high expression in mature pollen grains and in the pericycle and the xylem vasculature of the primary and lateral roots (PubMed:23921992). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:23921992}. locus:2095188; AT3G23750 receptor protein kinase TMK1-like NA NA NA NA NA NA NA ENOG411DZ6M 3BETAHSD/D2,3BETAHSD/D1 Q67ZE1,Q9FX01 HSDD2_ARATH,HSDD1_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (At3BETAHSD/D2) (EC 1.1.1.170) (4alpha-carboxysterol-C3-dehydrogenase/C4-decarboxylase isoform 1-2) (Reticulon-like protein B19) (AtRTNLB19) (Sterol-4-alpha-carboxylate 3-dehydrogenase 2, decarboxylating),3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (At3BETAHSD/D1) (EC 1.1.1.170) (4alpha-carboxysterol-C3-dehydrogenase/C4-decarboxylase isoform 1-1) (Reticulon-like protein B24) (AtRTNLB24) (Sterol-4-alpha-carboxylate 3-dehydrogenase 1, decarboxylating) PATHWAY: Steroid biosynthesis; zymosterol biosynthesis; zymosterol from lanosterol: step 4/6. ARA:AT2G26260-MONOMER;MetaCyc:AT2G26260-MONOMER;,ARA:AT1G47290-MONOMER;MetaCyc:AT1G47290-MONOMER; R-ATH-191273; 1.1.1.170 61704,48125 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (At3BETAHSD/D2) (EC 1.1.1.170) (4alpha-carboxysterol-C3-dehydrogenase/C4-decarboxylase isoform 1-2) (Reticulon-like protein B19) (AtRTNLB19) (Sterol-4-alpha-carboxylate 3-dehydrogenase 2, decarboxylating),3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (At3BETAHSD/D1) (EC 1.1.1.170) (4alpha-carboxysterol-C3-dehydrogenase/C4-decarboxylase isoform 1-1) (Reticulon-like protein B24) (AtRTNLB24) (Sterol-4-alpha-carboxylate 3-dehydrogenase 1, decarboxylating) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; 3-beta-hydroxy-delta5-steroid dehydrogenase activity [GO:0003854]; 4alpha-carboxy-4beta-methyl-5alpha-cholesta-8-en-3beta-ol:NAD(P)+ 3-oxidoreductase (decarboxylating) activity [GO:0103066]; 4alpha-carboxy-5alpha-cholesta-8-en-3beta-ol:NAD(P)+ 3-dehydrogenase (decarboxylating) activity [GO:0103067]; sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity [GO:0047012]; sterol biosynthetic process [GO:0016126] locus:2057786;,locus:2203771; AT2G26260,AT1G47290 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform Reticulon-like protein Q7Y0G4 Q7Y0G4_ORYSJ LOC_Os03g29170 Os03g0405000 OSJNBb0074M06.10 OSNPB_030405000 ENOG411E3CV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor kinase Os11g0514400 protein A0A0P0Y2U8 A0A0P0Y2U8_ORYSJ Os11g0514400 OSNPB_110514400 ENOG411E3CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0340600 protein,Os01g0341200 protein (cDNA clone:J013170C22, full insert sequence) (cDNA clone:J033100K08, full insert sequence),Os01g0341000 protein Q5ZB23,Q5ZB16,A0A0P0V2B0 Q5ZB23_ORYSJ,Q5ZB16_ORYSJ,A0A0P0V2B0_ORYSJ Os01g0340600 Os01g0340600 B1088D01.31 OJ1111_G12.4 OSNPB_010340600,Os01g0341200 OJ1111_G12.17 OSNPB_010341200,Os01g0341000 OSNPB_010341000 ENOG411E3CR LBD4 Q9SHE9 LBD4_ARATH LOB domain-containing protein 4 (ASYMMETRIC LEAVES 2-like protein 6) (AS2-like protein 6) 18697 LOB domain-containing protein 4 (ASYMMETRIC LEAVES 2-like protein 6) (AS2-like protein 6) TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. locus:2197500; AT1G31320 lob domain-containing protein NA NA NA NA NA NA NA ENOG411E3CZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3CB F4P12_140 Q9LFH4 Q9LFH4_ARATH At3g53440 (Homeodomain-like superfamily protein) (Uncharacterized protein At3g53440/F4P12_140) (Uncharacterized protein F4P12_140) 57331 At3g53440 (Homeodomain-like superfamily protein) (Uncharacterized protein At3g53440/F4P12_140) (Uncharacterized protein F4P12_140) DNA binding [GO:0003677] locus:2084041; AT3G53440 NA Os01g0581900 protein C7IWK2 C7IWK2_ORYSJ Os01g0581900 Os01g0581900 OSNPB_010581900 ENOG411E3CM MMI9.11 Q9LVA8 Q9LVA8_ARATH At5g62280 (DUF1442 family protein (DUF1442)) (Gb|AAB82627.1) (Uncharacterized protein At5g62280) 26010 At5g62280 (DUF1442 family protein (DUF1442)) (Gb|AAB82627.1) (Uncharacterized protein At5g62280) locus:2167913; AT5G62280 Protein of unknown function (DUF1442) NA NA NA NA NA NA NA ENOG411E3CN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0760400 protein (cDNA clone:J023007I17, full insert sequence) Q6K8D3 Q6K8D3_ORYSJ Os02g0760400 OJ1175_B01.16 OsJ_08467 OSNPB_020760400 ENOG411E3CH NAKR2 Q58FZ0 NAKR2_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 (NaKR2) (Heavy metal-associated plant protein 3) (AtHPP03) 27868 Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 (NaKR2) (Heavy metal-associated plant protein 3) (AtHPP03) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2049731; AT2G37390 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E3C5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione NA NA NA NA NA NA NA ENOG411E3C4 SCL33 Q9SEU4,A0A1P8APR4,A0A1P8APR8 SRC33_ARATH,A0A1P8APR4_ARATH,A0A1P8APR8_ARATH Serine/arginine-rich SC35-like splicing factor SCL33 (At-SCL33) (AtSCL33) (SC35-like splicing factor 33) (Serine/arginine-rich splicing factor 33),SC35-like splicing factor 33 DISRUPTION PHENOTYPE: No effect on alternative splicing, due to the redundancy with SCL30A. Scl33 and scl30a double mutant shows altered splicing. {ECO:0000269|PubMed:22913769}. FUNCTION: Involved in intron recognition and spliceosome assembly. Binds to multiple 5'-GAAG-3' repeats found in its third intron, suggesting autoregulation of alternative splicing (PubMed:22913769). May be necessary for accurate splicing of the 3' region of introns. {ECO:0000269|PubMed:22913769}. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses and hormones. {ECO:0000305|PubMed:17319848}. 33337,23631,23544 Serine/arginine-rich SC35-like splicing factor SCL33 (At-SCL33) (AtSCL33) (SC35-like splicing factor 33) (Serine/arginine-rich splicing factor 33),SC35-like splicing factor 33 cytoplasm [GO:0005737]; interchromatin granule [GO:0035061]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; spliceosomal complex [GO:0005681]; identical protein binding [GO:0042802]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380],nucleic acid binding [GO:0003676] DEVELOPMENTAL STAGE: Near the primary root tip, expressed in the vascular bundle, endodermis, cortex, epidermis, and lateral root cap. In leaves, present in guard cells leaf epidermal pavement cells and trichomes. In flowers, high expression in the pollen grains, mostly in vegetative nuclei. Also present in sepals, petals, and young siliques. After flowering, the expression level decreases gradually. {ECO:0000269|PubMed:15034145}. TISSUE SPECIFICITY: Ubiquitous. Mostly expressed in roots, fruits and flowers, and, to a lower extent, in leaves. {ECO:0000269|PubMed:10593939, ECO:0000269|PubMed:15034145}. locus:2035651; AT1G55310 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E3C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DZC Putative protein Brevis radix-like 5 (OsBRXL5),Os12g0193000 protein,Os04g0475250 protein Q2QWK1,A0A0P0Y7S6,A0A0N7KJ81 BRXL5_ORYSJ,A0A0P0Y7S6_ORYSJ,A0A0N7KJ81_ORYSJ BRXL5 Os12g0193000 LOC_Os12g09080 OsJ_35495,Os12g0193000 OSNPB_120193000,Os04g0475250 OSNPB_040475250 ENOG411E3C6 Q9ZUF7 LOR6_ARATH Protein LURP-one-related 6 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 21131 Protein LURP-one-related 6 locus:2064686; AT2G05910 LURP-one-related 6-like Os04g0446000 protein (Fragment) A0A0P0WAL6 A0A0P0WAL6_ORYSJ Os04g0446000 OSNPB_040446000 ENOG411E3C3 F4IUS3 F4IUS3_ARATH DCD (Development and Cell Death) domain protein 78331 DCD (Development and Cell Death) domain protein locus:2059406; AT2G32910 DCD NA NA NA NA NA NA NA ENOG411E3C9 Q9LSG4 Q9LSG4_ARATH Acidic leucine-rich nuclear phosphoprotein 32 family B protein 46522 Acidic leucine-rich nuclear phosphoprotein 32 family B protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2090315; AT3G25130 NA Os11g0458100 protein (Fragment) A0A0P0Y1T1 A0A0P0Y1T1_ORYSJ Os11g0458100 OSNPB_110458100 ENOG411E3C8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EF5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stores iron in a soluble non-toxic readily available form. Important for iron homeostasis (By similarity) NA NA NA NA NA NA NA ENOG411EMKR Q9C8P5,A0A1P8AVY5,F4HYC8 Q9C8P5_ARATH,A0A1P8AVY5_ARATH,F4HYC8_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g35420) (Uncharacterized protein F12A4.4),Alpha/beta-Hydrolases superfamily protein R-ATH-211945; 34167,30586,34790 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g35420) (Uncharacterized protein F12A4.4),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; hydrolase activity [GO:0016787] locus:2008658; AT1G35420 Dienelactone hydrolase family Os05g0429500 protein (Fragment) A0A0N7KKT9 A0A0N7KKT9_ORYSJ Os05g0429500 OSNPB_050429500 ENOG411EMKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0784100 protein A0A0P0W4D7 A0A0P0W4D7_ORYSJ Os03g0784100 OSNPB_030784100 ENOG411EMKM TOM9-2 Q9FNC9 TOM92_ARATH Mitochondrial import receptor subunit TOM9-2 (Mitochondrial import receptor subunit TOM22 homolog 2) (Translocase of outer membrane 22 kDa subunit homolog 2) (Translocase of outer membrane 9 kDa subunit TOM9-2) FUNCTION: Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM20 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore (By similarity). {ECO:0000250|UniProtKB:P49334}. 10378 Mitochondrial import receptor subunit TOM9-2 (Mitochondrial import receptor subunit TOM22 homolog 2) (Translocase of outer membrane 22 kDa subunit homolog 2) (Translocase of outer membrane 9 kDa subunit TOM9-2) integral component of mitochondrial outer membrane [GO:0031307]; mitochondrial outer membrane translocase complex [GO:0005742]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein import into mitochondrial matrix [GO:0030150]; protein import into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626] TISSUE SPECIFICITY: Expressed in young cotyledons, roots, flowers and leaves. {ECO:0000269|PubMed:14730085}. locus:2172482; AT5G43970 Inherit from euNOG: translocase of outer membrane 22-v NA NA NA NA NA NA NA ENOG411EMKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: DBC1 NA NA NA NA NA NA NA ENOG411EMK1 P93755 C3H30_ARATH Zinc finger CCCH domain-containing protein 30 (AtC3H30) 77992 Zinc finger CCCH domain-containing protein 30 (AtC3H30) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2064647; AT2G41900 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411EG1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1PY Q9ZR08,A0A1P8B844,A0A1P8B840,A0A1P8B838,A0A1P8B837,A0A1P8B859 Y4230_ARATH,A0A1P8B844_ARATH,A0A1P8B840_ARATH,A0A1P8B838_ARATH,A0A1P8B837_ARATH,A0A1P8B859_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 (EC 2.7.11.1),G-type lectin S-receptor-like Serine/Threonine-kinase 2.7.11.1 96200,102123,105181,113555,94910,95799 G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 (EC 2.7.11.1),G-type lectin S-receptor-like Serine/Threonine-kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] AT4G03230 G-type lectin S-receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DW8W A8MR57,Q84TF1 A8MR57_ARATH,Q84TF1_ARATH AT4G28830 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At4g28830 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At4g28830) 17315,23193 AT4G28830 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At4g28830 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At4g28830) methyltransferase activity [GO:0008168]; nucleic acid binding [GO:0003676] locus:2117813; AT4G28830 Methyltransferase-like protein Os06g0162600 protein (Putative early nodule-specific-like protein ENOD8) (cDNA clone:J013075C21, full insert sequence) Q5WA78 Q5WA78_ORYSJ Os06g0162600 OSNPB_060162600 P0681F10.37 ENOG411DW8T NTH1,NTH2 Q9SIC4,B9DFZ0 NTH1_ARATH,NTH2_ARATH Endonuclease III homolog 1, chloroplastic (AtNTH1) (EC 3.2.2.-) (EC 4.2.99.18) (Bifunctional DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase 1) (DNA glycosylase/AP lyase 1),Endonuclease III homolog 2, chloroplastic (AtNTH2) (EC 3.2.2.-) (EC 4.2.99.18) (Bifunctional DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase 2) (DNA glycosylase/AP lyase 2) DISRUPTION PHENOTYPE: No effect on chloroplastic glycosylase-lyase/endonuclease activity, probably due to function redundancy. {ECO:0000269|PubMed:19372224}. FUNCTION: Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. {ECO:0000255|HAMAP-Rule:MF_03183, ECO:0000269|PubMed:11094978}.,FUNCTION: Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. {ECO:0000255|HAMAP-Rule:MF_03183, ECO:0000269|PubMed:19372224}. R-ATH-110329;R-ATH-110357; 4.2.99.18; 3.2.2.-; 4.2.99.18 41728,42415 Endonuclease III homolog 1, chloroplastic (AtNTH1) (EC 3.2.2.-) (EC 4.2.99.18) (Bifunctional DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase 1) (DNA glycosylase/AP lyase 1),Endonuclease III homolog 2, chloroplastic (AtNTH2) (EC 3.2.2.-) (EC 4.2.99.18) (Bifunctional DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase 2) (DNA glycosylase/AP lyase 2) chloroplast nucleoid [GO:0042644]; nucleus [GO:0005634]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA N-glycosylase activity [GO:0019104]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; metal ion binding [GO:0046872]; oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity [GO:0000703]; base-excision repair [GO:0006284]; base-excision repair, AP site formation [GO:0006285]; nucleotide-excision repair, DNA incision, 5'-to lesion [GO:0006296] TISSUE SPECIFICITY: Expressed at low levels in roots, stems, leaves and flowers. {ECO:0000269|PubMed:11094978}. locus:2061345;,locus:2198738; AT2G31450,AT1G05900 endonuclease III-like protein Os11g0267300 protein A0A0N7KSR4 A0A0N7KSR4_ORYSJ Os11g0267300 OSNPB_110267300 ENOG411EB9M F26K9_280 Q9LZI1 Q9LZI1_ARATH Uncharacterized protein F26K9_280 (Zinc finger protein-like protein) 53678 Uncharacterized protein F26K9_280 (Zinc finger protein-like protein) peroxisome [GO:0005777]; nucleic acid binding [GO:0003676]; regulation of gene expression [GO:0010468] locus:2081700; AT3G62850 Pfam:DUF88 NA NA NA NA NA NA NA ENOG411DQEN SBTI1.1 Q84WS0 SBT11_ARATH Subtilisin-like protease SBT1.1 (EC 3.4.21.-) (Subtilase subfamily 1 member 1) (AtSBT1.1) FUNCTION: Serine protease that cleaves the phytosulfokines PSK3, PSK2 and PSK5 in vitro. Phytosulfokines are plant growth factors or peptide hormones that promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. {ECO:0000269|PubMed:18643977}. ARA:AT1G01900-MONOMER; 3.4.21.- 83247 Subtilisin-like protease SBT1.1 (EC 3.4.21.-) (Subtilase subfamily 1 member 1) (AtSBT1.1) cell wall [GO:0005618]; extracellular matrix [GO:0031012]; proteinaceous extracellular matrix [GO:0005578]; serine-type endopeptidase activity [GO:0004252]; proteolysis [GO:0006508] locus:2025457; AT1G01900 subtilisin-like protease-like NA NA NA NA NA NA NA ENOG411DQEM EFM Q9ZQ85 EFM_ARATH Myb family transcription factor EFM (MYB-domain transcription factor HHO4) (Protein EARLY FLOWERING MYB) (Protein HRS1 HOMOLOG 4) DISRUPTION PHENOTYPE: Early flowering under both long-day and short-day conditions. {ECO:0000269|PubMed:25132385}. FUNCTION: Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. 47962 Myb family transcription factor EFM (MYB-domain transcription factor HHO4) (Protein EARLY FLOWERING MYB) (Protein HRS1 HOMOLOG 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; histone H3-K36 methylation [GO:0010452]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of transcription, DNA-templated [GO:0006355]; response to temperature stimulus [GO:0009266]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}. TISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}. locus:2063746; AT2G03500 MYB family transcription factor Transcription factor NIGTH1 (MYB-domain transcription factor NIGT1 homolog 1) Q5VRW2 NOH1_ORYSJ NHO1 Os01g0176700 LOC_Os01g08160 P0013F10.17 FUNCTION: Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}. ENOG411DQEK PIRL9,PIRL1 Q8VYG9,Q9FFJ3 PIRL9_ARATH,PIRL1_ARATH Plant intracellular Ras-group-related LRR protein 9,Plant intracellular Ras-group-related LRR protein 1 DISRUPTION PHENOTYPE: No visible phenotype. Pirl1 and pirl9 double mutant is lethal due to a male-specific transmission failure leading to a severe pollen malformation. {ECO:0000269|PubMed:20697737, ECO:0000269|PubMed:21140166}. microspore lethal FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. PIRL9 acts redundantly with PIRL1 in the differentiation of microspores into pollen. {ECO:0000269|PubMed:20697737, ECO:0000269|PubMed:21140166}.,FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. PIRL1 acts redundantly with PIRL9 in the differentiation of microspores into pollen. {ECO:0000269|PubMed:20697737, ECO:0000269|PubMed:21140166}. 55503,56578 Plant intracellular Ras-group-related LRR protein 9,Plant intracellular Ras-group-related LRR protein 1 microgametogenesis [GO:0055046]; pollen development [GO:0009555] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:15809230}. locus:2074728;,locus:2166429; AT3G11330,AT5G05850 Leucine-rich repeat family protein Plant intracellular Ras-group-related LRR protein 3 (Intracellular Ras-group-related LRR protein 3) (OsIRL3),Plant intracellular Ras-group-related LRR protein 2 (Intracellular Ras-group-related LRR protein 2) (OsIRL2),Os04g0476700 protein (Fragment) Q7XK44,Q6ZH85,A0A0N7KJ83 PIRL3_ORYSJ,PIRL2_ORYSJ,A0A0N7KJ83_ORYSJ IRL3 Os04g0476700 LOC_Os04g40080 OSJNBa0044K18.1,IRL2 Os02g0593600 LOC_Os02g38040 OJ1067_B01.5 OsJ_07347 OSJNBa0016G10.27,Os04g0476700 OSNPB_040476700 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20949308}. FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. ENOG411DQEF MPK17.2 A0A1P8BG30,C0SVH8,F4K4H9,A0A1P8BG27,Q9ZW00,A0A1P8B7I1,A0A1P8BA02,F4K4G6,A0A1P8BFX4 A0A1P8BG30_ARATH,C0SVH8_ARATH,F4K4H9_ARATH,A0A1P8BG27_ARATH,Q9ZW00_ARATH,A0A1P8B7I1_ARATH,A0A1P8BA02_ARATH,F4K4G6_ARATH,A0A1P8BFX4_ARATH Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (RING/FYVE/PHD zinc finger superfamily protein),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (Uncharacterized protein At4g14920) (Fragment),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein,RING/FYVE/PHD zinc finger superfamily protein,Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (T25N20.3) 101699,127312,130845,132679,126359,127442,114716,133770,116550 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (RING/FYVE/PHD zinc finger superfamily protein),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (Uncharacterized protein At4g14920) (Fragment),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein,RING/FYVE/PHD zinc finger superfamily protein,Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (T25N20.3) DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transferase activity, transferring acyl groups [GO:0016746],metal ion binding [GO:0046872]; transferase activity, transferring acyl groups [GO:0016746],DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:2129505;,locus:2147391;,locus:2201021;,locus:2832118; AT5G36740,AT1G05380,AT5G36670 PHD-finger Os03g0747600 protein (Fragment) A0A0N7KI17,A0A0P0W3M9 A0A0N7KI17_ORYSJ,A0A0P0W3M9_ORYSJ Os03g0747600 OSNPB_030747600 ENOG411DQED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os05g0565900 protein (WRKY transcription factor) Q688X5 Q688X5_ORYSJ Os05g0565900 OJ1781_H11.1 OsJ_19568 OSNPB_050565900 ENOG411DQEB Q9SIJ7,Q8H0S3,Q8VXX0,Q9LUG1,F4J462,F4JUM3,F4JUM1 Q9SIJ7_ARATH,Q8H0S3_ARATH,Q8VXX0_ARATH,Q9LUG1_ARATH,F4J462_ARATH,F4JUM3_ARATH,F4JUM1_ARATH At2g21630 (Sec23/Sec24 protein transport family protein) (Uncharacterized protein At2g21630),At1g05520/T25N20_16 (Sec23/Sec24 protein transport family protein),Putative transport protein (Sec23/Sec24 protein transport family protein),Protein transport protein Sec23 (Putative transport protein) (Sec23/Sec24 protein transport family protein),Sec23/Sec24 protein transport family protein R-ATH-204005;R-ATH-5694530;R-ATH-983170; 84599,86357,85278,84047,87218,68623,85378 At2g21630 (Sec23/Sec24 protein transport family protein) (Uncharacterized protein At2g21630),At1g05520/T25N20_16 (Sec23/Sec24 protein transport family protein),Putative transport protein (Sec23/Sec24 protein transport family protein),Protein transport protein Sec23 (Putative transport protein) (Sec23/Sec24 protein transport family protein),Sec23/Sec24 protein transport family protein COPII vesicle coat [GO:0030127]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886],COPII vesicle coat [GO:0030127]; cytosol [GO:0005829]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886] locus:2049324;,locus:2201051;,locus:2088055;,locus:2129460; AT2G21630,AT1G05520,AT4G14160,AT3G23660 transport) protein Os08g0474700 protein (Putative SEC23),Os09g0460200 protein (Fragment) Q6ZDG9,A0A0P0XNN0 Q6ZDG9_ORYSJ,A0A0P0XNN0_ORYSJ Os08g0474700 Os08g0474700 OSNPB_080474700 P0451G12.16,Os09g0460200 OSNPB_090460200 ENOG411DQEC AT5G60700.1,MUP24.12 Q8GYZ9,Q9FF50 Q8GYZ9_ARATH,Q9FF50_ARATH Glycosyltransferase family protein 2 (Uncharacterized protein At5g60700/mup24_110),Glycosyltransferase family protein 2 76087,106379 Glycosyltransferase family protein 2 (Uncharacterized protein At5g60700/mup24_110),Glycosyltransferase family protein 2 transferase activity [GO:0016740],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2175786; AT5G60700 Inherit from euNOG: Conserved hypothetical protein Os09g0434600 protein (Fragment),Glycosyltransferase protein 2-like (Os02g0806500 protein),Os12g0183900 protein,Os03g0717500 protein Q0J1J8,Q6K8F2,A0A0P0Y7N4,A0A0P0W2C4 Q0J1J8_ORYSJ,Q6K8F2_ORYSJ,A0A0P0Y7N4_ORYSJ,A0A0P0W2C4_ORYSJ Os09g0434600 OSNPB_090434600,Os02g0806500 OJ1111_C07.15 OsJ_08789 OSNPB_020806500,Os12g0183900 OSNPB_120183900,Os03g0717500 OSNPB_030717500 ENOG411DQEA SDS Q1PFW3,A0A1P8AUB6,A0A1P8AUC8 CCSDS_ARATH,A0A1P8AUB6_ARATH,A0A1P8AUC8_ARATH Cyclin-SDS (Protein SOLO DANCERS),Cyclin family protein DISRUPTION PHENOTYPE: Plants exhibit a severe defect in homolog synapsis recombination and bivalent formation in prophase 1, resulting in random chromosome distribution and formation of abnormal meiotic products. {ECO:0000269|PubMed:12065421}. Defective in meiotic double strand break formation. Fewer chiasmata formed per cell compared to the wild type cells. Severely reduced fertility due to defects in meiosis-H. Ma-2002 FUNCTION: Meiosis-specific cyclin. Required for normal homolog synapsis and recombination in early to mid-prophase 1. May regulate the timing of sister chromatid separation. {ECO:0000269|PubMed:12065421}. R-ATH-1538133;R-ATH-69200;R-ATH-69202; 65201,69866,46802 Cyclin-SDS (Protein SOLO DANCERS),Cyclin family protein nucleus [GO:0005634]; cell division [GO:0051301]; chiasma assembly [GO:0051026]; double-strand break repair via homologous recombination [GO:0000724],nucleus [GO:0005634] DEVELOPMENTAL STAGE: Expressed during male meiosis specifically in male meiotic cells (male meiocytes within anther locules). Expressed during female meiosis specifically in the female meiocytes within the ovule. {ECO:0000269|PubMed:12065421}. locus:2006827; AT1G14750 cell division Cyclin-SDS-like (Protein SOLO DANCERS-like) (OsSDS),Os03g0225200 protein Q10PQ9,A0A0P0VUW7 CCSDS_ORYSJ,A0A0P0VUW7_ORYSJ SDS Os03g0225200 LOC_Os03g12414 OsJ_09984 OSJNBa0081P02.10 OSJNBa0081P02.9,Os03g0225200 OSNPB_030225200 FUNCTION: Meiosis-specific cyclin. Required for normal homolog synapsis and recombination in early to mid-prophase 1. {ECO:0000269|PubMed:19417775}. ENOG411DQEZ TL20.3 Q8H1Q1,A0A1P8AQ24,B6EUA5 TL203_ARATH,A0A1P8AQ24_ARATH,B6EUA5_ARATH Thylakoid lumenal protein TL20.3, chloroplastic,Pentapeptide repeat-containing protein FUNCTION: Pentapeptide repeat protein of unknown function. Subject to degradation when reduced. {ECO:0000269|PubMed:20049866}. 30065,15432,21768 Thylakoid lumenal protein TL20.3, chloroplastic,Pentapeptide repeat-containing protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579] locus:2202033; AT1G12250 thylakoid lumenal protein Os02g0643500 protein (Thylakoid lumenal protein-like) (cDNA clone:J013153L01, full insert sequence) Q6H667 Q6H667_ORYSJ Os02g0643500 Os02g0643500 OJ1282_H11.6 OsJ_07699 OSNPB_020643500 ENOG411DQEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - F-box domain containing protein expressed Os05g0172500 protein,Os07g0535200 protein (cDNA clone:001-123-C06, full insert sequence) (cDNA clone:J033066K01, full insert sequence),Os07g0535100 protein (cDNA clone:J023144E12, full insert sequence),Os05g0172400 protein,Os10g0559550 protein Q65WV2,Q8H5H1,Q8H5H2,A0A0P0WIH5,A0A0P0XXR4 Q65WV2_ORYSJ,Q8H5H1_ORYSJ,Q8H5H2_ORYSJ,A0A0P0WIH5_ORYSJ,A0A0P0XXR4_ORYSJ Os05g0172500 Os05g0172500 OSNPB_050172500 P0672D07.5,OJ1131_E05.126 Os07g0535200 OSJNBa0039D04.47 OSNPB_070535200,OJ1131_E05.124 Os07g0535100 OSJNBa0039D04.45 OSNPB_070535100,Os05g0172400 OSNPB_050172400,Os10g0559550 OSNPB_100559550 ENOG411DQEY APA1,APA2 O65390,Q8VYL3,A0A1P8AVE7,A0A1P8AV08,A0A1P8AVH3,A0A1P8AVA7 APA1_ARATH,APA2_ARATH,A0A1P8AVE7_ARATH,A0A1P8AV08_ARATH,A0A1P8AVH3_ARATH,A0A1P8AVA7_ARATH Aspartic proteinase A1 (EC 3.4.23.-),Aspartic proteinase A2 (EC 3.4.23.-) (Aspartic protease 57) (AtASP57),Saposin-like aspartyl protease family protein,Aspartic proteinase A1 FUNCTION: Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles (By similarity). Possesses aspartic protease activity in vitro. {ECO:0000250, ECO:0000269|PubMed:20079503}.,FUNCTION: Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles. {ECO:0000250}. R-ATH-2132295;R-ATH-6798695; 3.4.23.- 54614,55748,50337,56036,45856,52775 Aspartic proteinase A1 (EC 3.4.23.-),Aspartic proteinase A2 (EC 3.4.23.-) (Aspartic protease 57) (AtASP57),Saposin-like aspartyl protease family protein,Aspartic proteinase A1 cytosol [GO:0005829]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; aspartic-type endopeptidase activity [GO:0004190]; endopeptidase activity [GO:0004175]; lipid metabolic process [GO:0006629]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651],vacuole [GO:0005773]; aspartic-type endopeptidase activity [GO:0004190]; lipid metabolic process [GO:0006629]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petals, carpels, seed pods and dry seeds. {ECO:0000269|PubMed:12230581}.,TISSUE SPECIFICITY: Expressed in seed pods and dry seeds. {ECO:0000269|PubMed:12230581}. locus:2008940;,locus:2018037; AT1G11910,AT1G62290 aspartic proteinase NA NA NA NA NA NA NA ENOG411DQEV NIK3 Q93ZS4,A0A1P8ATQ8 NIK3_ARATH,A0A1P8ATQ8_ARATH Protein NSP-INTERACTING KINASE 3 (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase NIK3),NSP-interacting kinase 3 DISRUPTION PHENOTYPE: Enhanced susceptibility to geminivirus infection. {ECO:0000269|PubMed:15489295}. FUNCTION: Involved in defense response to geminivirus infection. {ECO:0000269|PubMed:15489295}. 2.7.11.1 70171,62461 Protein NSP-INTERACTING KINASE 3 (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase NIK3),NSP-interacting kinase 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468]; viral process [GO:0016032],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:15489295}. locus:2036636; AT1G60800 NSP-interacting kinase LRR receptor kinase SERL2 (EC 2.7.11.1) (BRI1-associated receptor kinase 1 homolog 7) (OsBAK1-7) (Somatic embryogenesis receptor kinase-like 2) (OsSERL2),Os01g0171000 protein (Putative brassinosteroid insensitive 1-associated receptor kinase 1),Os01g0171000 protein (Putative brassinosteroid insensitive 1-associated receptor kinase 1) (SERK like protein kinase) (cDNA clone:J013144J12, full insert sequence),Os02g0728500 protein (cDNA clone:J033072J21, full insert sequence),Os06g0274300 protein Q9FP13,Q5VQL8,Q5VQL9,B7EMY9,A0A0P0WV71 SERL2_ORYSJ,Q5VQL8_ORYSJ,Q5VQL9_ORYSJ,B7EMY9_ORYSJ,A0A0P0WV71_ORYSJ SERL2 BAK1-7 Os06g0274500 LOC_Os06g16330 P0038C05.17 P0676F10.28,P0583G08.19-2 Os01g0171000 OSNPB_010171000,P0583G08.19-1 Os01g0171000 OsSERK1 OsJ_00547 OSNPB_010171000,Os02g0728500 OSNPB_020728500,Os06g0274300 OSNPB_060274300 FUNCTION: LRR receptor kinase that may be involved in defense response. {ECO:0000250|UniProtKB:Q7XV05}. ENOG411DQEW NPC2 O81020 NPC2_ARATH Non-specific phospholipase C2 (EC 3.1.-.-) ARA:AT2G26870-MONOMER; Glycerophospholipid metabolism (00564),Ether lipid metabolism (00565),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.-.- 57681 Non-specific phospholipase C2 (EC 3.1.-.-) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; phospholipid catabolic process [GO:0009395] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:20507939}. locus:2039563; AT2G26870 phospholipase C Os01g0955000 protein (Putative phosphatidylglycerol specific phospholipase C) (cDNA clone:J033033G16, full insert sequence),Os01g0955000 protein Q8RYK2,A0A0P0VD03 Q8RYK2_ORYSJ,A0A0P0VD03_ORYSJ B1139B11.14-1 Os01g0955000 OsJ_04801 OSNPB_010955000,Os01g0955000 OSNPB_010955000 ENOG411DQET RABB1B,RABB1A,RABB1C Q38922,O23561,P92963 RAB1B_ARATH,RAB1A_ARATH,RAB1C_ARATH Ras-related protein RABB1b (AtRABB1b) (Ras-related protein GB2) (AtGB2) (Ras-related protein Rab2C) (AtRab2C),Ras-related protein RABB1a (AtRABB1a) (Ras-related protein Rab2B) (AtRab2B),Ras-related protein RABB1c (AtRABB1c) (Ras-related protein Rab2A) (AtRab2A) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-8873719; 23175,22945,23164 Ras-related protein RABB1b (AtRABB1b) (Ras-related protein GB2) (AtGB2) (Ras-related protein Rab2C) (AtRab2C),Ras-related protein RABB1a (AtRABB1a) (Ras-related protein Rab2B) (AtRab2B),Ras-related protein RABB1c (AtRABB1c) (Ras-related protein Rab2A) (AtRab2A) chloroplast [GO:0009507]; endosome [GO:0005768]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031]; regulation of endocytosis [GO:0030100],Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],endosome [GO:0005768]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031]; regulation of endocytosis [GO:0030100] locus:2125384;,locus:2130614;,locus:2130624; AT4G35860,AT4G17160,AT4G17170 ras-related protein OSJNBa0089K21.1 protein (Os04g0470100 protein) (cDNA clone:006-204-F05, full insert sequence),Os02g0586400 protein (Putative GTP-binding protein yptm3) (cDNA clone:006-207-A09, full insert sequence) (cDNA clone:J023004J08, full insert sequence),Os10g0208200 protein Q7XQN5,Q6YY17,A0A0N7KRK4 Q7XQN5_ORYSJ,Q6YY17_ORYSJ,A0A0N7KRK4_ORYSJ Os04g0470100 OsJ_15130 OSJNBa0089K21.1 OSNPB_040470100,Os02g0586400 Os02g0586400 OsJ_07304 OSJNBb0056I22.32 OSNPB_020586400,Os10g0208200 OSNPB_100208200 ENOG411DQEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os08g0179400 protein A0A0P0XCY2 A0A0P0XCY2_ORYSJ Os08g0179400 OSNPB_080179400 ENOG411DQER CAD4,CAD5 P48523,O49482,F4JKM2 CADH4_ARATH,CADH5_ARATH,F4JKM2_ARATH Cinnamyl alcohol dehydrogenase 4 (AtCAD4) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase C),Cinnamyl alcohol dehydrogenase 5 (AtCAD5) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase D),Cinnamyl alcohol dehydrogenase 5 DISRUPTION PHENOTYPE: Reduced lignin content and rigidity of the floral stems. {ECO:0000269|PubMed:15937231}. FUNCTION: Involved in lignin biosynthesis in the floral stem. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000269|PubMed:12805615, ECO:0000269|PubMed:14745009, ECO:0000269|PubMed:15937231}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. MetaCyc:AT3G19450-MONOMER;,MetaCyc:AT4G34230-MONOMER; 1.1.1.195; 1.1.1.195 39098,38744,38717 Cinnamyl alcohol dehydrogenase 4 (AtCAD4) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase C),Cinnamyl alcohol dehydrogenase 5 (AtCAD5) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase D),Cinnamyl alcohol dehydrogenase 5 cinnamyl-alcohol dehydrogenase activity [GO:0045551]; sinapyl alcohol dehydrogenase activity [GO:0052747]; zinc ion binding [GO:0008270]; lignin biosynthetic process [GO:0009809]; response to karrikin [GO:0080167],cytosol [GO:0005829]; cinnamyl-alcohol dehydrogenase activity [GO:0045551]; sinapyl alcohol dehydrogenase activity [GO:0052747]; zinc ion binding [GO:0008270]; lignin biosynthetic process [GO:0009809],oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed at the lateral root initiation sites, in the vascular tissues of the primary lateral root and the root caps. Expressed in the hypocotyl, cotyledon and leaf veins, apical meristem region, hydathodes, at the base of the trichomes and cauline leaves. In stems, expressed in the cells associated with the vascular cambium, interfascicular cambium and the developing xylem. Expressed in the vascular strand of petals and sepals, anthers, stamen filaments, stigma with papillary cells in flowers, and abscission, style and stigmatic regions of siliques. {ECO:0000269|PubMed:12805615, ECO:0000269|PubMed:17467016}.,TISSUE SPECIFICITY: Expressed at the lateral root initiation sites, in the vascular tissues of the primary lateral root and the root caps. Expressed in the hypocotyl, cotyledon and leaf veins, apical meristem region, at the base of the trichomes, hydathodes and cauline leaves. In stems, expressed in the cells associated with the vascular cambium, interfascicular cambium and the developing xylem. Expressed in the vascular strand of petals and sepals, anthers, stamen filaments, stigma in flowers, and abscission, style and stigmatic regions of siliques. {ECO:0000269|PubMed:12805615, ECO:0000269|PubMed:17467016}. locus:2090704;,locus:2124311; AT3G19450,AT4G34230 Cinnamyl alcohol dehydrogenase Cinnamyl alcohol dehydrogenase 2 (OsCAD2) (EC 1.1.1.195) (Protein GOLD HULL AND INTERNODE 2),Os02g0187800 protein (Fragment) Q6ZHS4,A0A0P0VFU1 CADH2_ORYSJ,A0A0P0VFU1_ORYSJ CAD2 CAD GH2 Os02g0187800 LOC_Os02g09490 OJ1073_F05.31 OJ1145_F01.6,Os02g0187800 OSNPB_020187800 DISRUPTION PHENOTYPE: Reduced lignin content, reddish-brown coloration of panicles and internodes, and golden yellow seeds. {ECO:0000269|PubMed:16443696}. FUNCTION: Involved in lignin biosynthesis (PubMed:16443696, PubMed:21912859). Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde and sinapaldehyde to their respective alcohols (PubMed:16443696). Plays the major role in monolignol biosynthesis. Functions cooperatively with COMT in the culm internodes for the biosynthesis of monolignols, the lignin precursors. May be involved in lignin biosynthesis in leaves and roots (PubMed:21912859). {ECO:0000269|PubMed:16443696, ECO:0000269|PubMed:21912859}. ENOG411DQES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os02g0113800 protein (cDNA clone:J023131L22, full insert sequence),Os02g0113300 protein,Os02g0113900 protein,Os04g0143700 protein Q6Z7C7,Q6ZH22,A0A0P0VDY7,A0A0N7KIJ3 Q6Z7C7_ORYSJ,Q6ZH22_ORYSJ,A0A0P0VDY7_ORYSJ,A0A0N7KIJ3_ORYSJ Os02g0113800 Os02g0113800 OJ1399_H05.27 OsJ_05087 OSNPB_020113800 P0036E06.6,Os02g0113300 OJ1399_H05.20 OsJ_05084 OSNPB_020113300,Os02g0113900 OSNPB_020113900,Os04g0143700 OSNPB_040143700 ENOG411DQEP CYP78A6,CYP78A9,CYP78A7 Q9ZNR0,Q9SLP1,Q9FIB0,F4IX02 C78A6_ARATH,C78A9_ARATH,C78A7_ARATH,F4IX02_ARATH Cytochrome P450 78A6 (EC 1.14.-.-) (Protein ENHANCER OF DA1-1),Cytochrome P450 78A9 (EC 1.14.-.-),Cytochrome P450 78A7 (EC 1.14.-.-),Cytochrome p450 78a9 DISRUPTION PHENOTYPE: Reduced seed size. {ECO:0000269|PubMed:22251317}.,DISRUPTION PHENOTYPE: Slight reduction in seed size. {ECO:0000269|PubMed:19892740}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18492871}. FUNCTION: Plays role in seed and fruit development. Functions probably in association with CYP78A9 in the regulation of seed growth. Acts maternally to promote seed growth. {ECO:0000269|PubMed:22251317}.,FUNCTION: Plays role in seed and fruit development. Functions probably in association with CYP78A6 in the regulation of seed growth. {ECO:0000269|PubMed:11006330, ECO:0000269|PubMed:19892740, ECO:0000269|PubMed:22251317}.,FUNCTION: Functions probably in association with CYP78A5 in regulating relative growth of the shoot apical meristem and plant organs via a non-cell-autonomous signal. {ECO:0000269|PubMed:18492871}. MISCELLANEOUS: The gain of function mutants eod3-1D (T-DNA tagging) show increased size of leaves, flowers and seeds, but defects in reproductive development. {ECO:0000305|PubMed:22251317}.,MISCELLANEOUS: The gain of function mutant 28-5 (T-DNA tagging) in apetala2-1 (ap2-1) mutant background show enlarged and wide pistils and siliques. {ECO:0000305|PubMed:11006330}. ARA:AT2G46660-MONOMER;,ARA:AT3G61880-MONOMER;,ARA:AT5G09970-MONOMER; 1.14.-.- 59565,60036,59494,62618 Cytochrome P450 78A6 (EC 1.14.-.-) (Protein ENHANCER OF DA1-1),Cytochrome P450 78A9 (EC 1.14.-.-),Cytochrome P450 78A7 (EC 1.14.-.-),Cytochrome p450 78a9 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; regulation of growth [GO:0040008]; secondary metabolite biosynthetic process [GO:0044550]; seed development [GO:0048316],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; fruit development [GO:0010154]; regulation of growth [GO:0040008]; secondary metabolite biosynthetic process [GO:0044550]; seed development [GO:0048316],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008]; regulation of timing of plant organ formation [GO:0090709]; secondary metabolite biosynthetic process [GO:0044550],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; fruit development [GO:0010154] TISSUE SPECIFICITY: Expressed in leaves, sepals, petals, stamens, carpels and developing ovules. {ECO:0000269|PubMed:22251317}.,TISSUE SPECIFICITY: Expressed in the funiculus of developing ovules. {ECO:0000269|PubMed:11006330}. locus:2039954;,locus:2178213;,locus:2079532; AT2G46660,AT3G61880,AT5G09970 cytochrome P450 Cytochrome P450 78A11 (EC 1.14.-.-) (Protein PLASTOCHRON1),Os08g0547300 protein (Putative cytochrome p450 (CYP78A9)) (cDNA clone:J013131L23, full insert sequence),Os09g0528700 protein (Putative cytochrome P450) Q7Y1V5,Q6Z9D5,Q69NG7 C78AB_ORYSJ,Q6Z9D5_ORYSJ,Q69NG7_ORYSJ CYP78A11 PLA1 Os10g0403000 LOC_Os10g26340 OSJNBa0044A10.17,Os08g0547300 OSNPB_080547300 P0544G09.12,Os09g0528700 OJ1531_B07.6 OSNPB_090528700 DISRUPTION PHENOTYPE: Plants double the number of leaves, and leaf size and plant height are reduced to about the half that of the wild-type. Some inflorescence branches are converted into vegetative shoots (PubMed:14711998, PubMed:9724697). Late flowering and excessive vegetative growth (PubMed:19337211). {ECO:0000269|PubMed:14711998, ECO:0000269|PubMed:19337211, ECO:0000269|PubMed:9724697}. FUNCTION: Involved in the regular timing (plastochron) of lateral organs formation. May regulate the rate of leaf initiation and the duration of vegetative phase. Seems to be redundant to the function of PLASTOCHRON2, but to act in an independent pathway. {ECO:0000269|PubMed:14711998}. MISCELLANEOUS: Plastochron is defined as the time interval between leaf initiation events. ENOG411DQEQ RGP1,RGP2,RGP3 Q9SRT9,Q9LFW1,O22666 RGP1_ARATH,RGP2_ARATH,RGP3_ARATH UDP-arabinopyranose mutase 1 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 1) (AtRGP1) (UDP-L-arabinose mutase 1),UDP-arabinopyranose mutase 2 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 2) (AtRGP2) (UDP-L-arabinose mutase 2),UDP-arabinopyranose mutase 3 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 3) (AtRGP3) (UDP-L-arabinose mutase 3) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but significant reduction in total cell wall arabinose. Rgp1 and rgp2 double mutant is male gametophyte lethal, with an arrest in pollen mitosis (PubMed:17071651). RNAi-mediated knockdown of both RGP1 and RGP2 causes severe developmental defects and strong reduction in total cell wall arabinose (PubMed:21478444). {ECO:0000269|PubMed:17071651, ECO:0000269|PubMed:21478444}. rgp1-1 mutants have significantly lower levels of UDP-L-arabinose mutase activity compared to wild-type plants and significantly lower levels of arabinose in their cell walls.,rgp2-2 mutants have significantly lower levels of UDP-L-arabinose mutase activity compared to wild-type plants and significantly lower levels of arabinose in their cell walls. FUNCTION: UDP-L-arabinose mutase involved in the biosynthesis of cell wall non-cellulosic polysaccharides. Catalyzes the interconvertion of UDP-L-arabinopyranose (UDP-Arap) and UDP-L-arabinofuranose (UDP-Araf) in vitro. Preferentially catalyzes the formation of UDP-Arap from UDP-Araf. At thermodynamic equilibrium in vitro the ratio of the pyranose form over the furanose form is 95:5. Is not active on other UDP-sugars (UDP-Gal, UDP-Xyl, UDP-Glc, GDP-Man and GDP-Fuc) (PubMed:21478444). Functions redundantly with RGP2 and is essential for proper cell walls and pollen development. Probably involved in the formation of the pectocellulosic cell wall layer intine. Is probably active as heteromer in vivo (PubMed:17071651). {ECO:0000269|PubMed:17071651, ECO:0000269|PubMed:21478444}.,FUNCTION: UDP-L-arabinose mutase involved in the biosynthesis of cell wall non-cellulosic polysaccharides. Catalyzes the interconvertion of UDP-L-arabinopyranose (UDP-Arap) and UDP-L-arabinofuranose (UDP-Araf). Preferentially catalyzes the formation of UDP-Arap from UDP-Araf. At thermodynamic equilibrium in vitro the ratio of the pyranose form over the furanose form is 95:5. Is not active on other UDP-sugars (UDP-Gal, UDP-Xyl, UDP-Glc, GDP-Man and GDP-Fuc). Is probably active as heteromer in vivo. {ECO:0000269|PubMed:21478444}. ARA:AT3G02230-MONOMER;MetaCyc:AT3G02230-MONOMER;,ARA:AT5G15650-MONOMER;,ARA:AT3G08900-MONOMER; 5.4.99.30 40629,40890,41282 UDP-arabinopyranose mutase 1 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 1) (AtRGP1) (UDP-L-arabinose mutase 1),UDP-arabinopyranose mutase 2 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 2) (AtRGP2) (UDP-L-arabinose mutase 2),UDP-arabinopyranose mutase 3 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 3) (AtRGP3) (UDP-L-arabinose mutase 3) cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; Golgi stack [GO:0005795]; Golgi trans cisterna [GO:0000138]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; cellulose synthase (UDP-forming) activity [GO:0016760]; intramolecular transferase activity [GO:0016866]; structural constituent of ribosome [GO:0003735]; UDP-arabinopyranose mutase activity [GO:0052691]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall biogenesis [GO:0009832]; plant-type cell wall organization or biogenesis [GO:0071669]; pollen development [GO:0009555]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255]; UDP-L-arabinose metabolic process [GO:0033356],cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; intramolecular transferase activity [GO:0016866]; structural constituent of ribosome [GO:0003735]; UDP-arabinopyranose mutase activity [GO:0052691]; arabinose biosynthetic process [GO:0019567]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall biogenesis [GO:0009832]; plant-type cell wall organization or biogenesis [GO:0071669]; pollen development [GO:0009555]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255]; UDP-L-arabinose metabolic process [GO:0033356],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasmodesma [GO:0009506]; intramolecular transferase activity [GO:0016866]; UDP-arabinopyranose mutase activity [GO:0052691]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall biogenesis [GO:0009832]; UDP-L-arabinose metabolic process [GO:0033356] TISSUE SPECIFICITY: Predominantly expressed in shoot and root apical meristems. Expressed in epidermal cells of leaves, inflorescence stems and seed coat. Expressed in pollen. {ECO:0000269|PubMed:17071651, ECO:0000269|PubMed:21478444, ECO:0000269|PubMed:9536051}.,TISSUE SPECIFICITY: Predominantly expressed in shoot and root apical meristems. Expressed in epidermal cells of leaves, inflorescence stems and seed coat. Expressed in pollen. {ECO:0000269|PubMed:17071651, ECO:0000269|PubMed:21478444}.,TISSUE SPECIFICITY: Specifically expressed in developing seeds. {ECO:0000269|PubMed:21478444}. locus:2076482;,locus:2143171;,locus:2097653; AT3G02230,AT5G15650,AT3G08900 reversibly glycosylated polypeptide UDP-arabinopyranose mutase 1 (OsUAM1) (EC 5.4.99.30) (Reversibly glycosylated polypeptide 1) (UDP-L-arabinose mutase 1),UDP-arabinopyranose mutase 3 (OsUAM3) (EC 5.4.99.30) (Reversibly glycosylated polypeptide 3) (UDP-L-arabinose mutase 3) Q8H8T0,Q6Z4G3 RGP1_ORYSJ,RGP3_ORYSJ UAM1 RGP1 Os03g0599800 LOC_Os03g40270 OJ1523_A02.1 OsJ_11657,UAM3 RGP3 Os07g0604800 LOC_Os07g41360 OsJ_25044 OSJNBb0040H10.21 FUNCTION: UDP-L-arabinose mutase involved in the biosynthesis of cell wall non-cellulosic polysaccharides. Catalyzes the interconvertion of UDP-L-arabinopyranose (UDP-Arap) and UDP-L-arabinofuranose (UDP-Araf). Preferentially catalyzes the formation of UDP-Arap from UDP-Araf. At thermodynamic equilibrium in vitro the ratio of the pyranose form over the furanose form is 90:10. Is probably active as heteromer in vivo. {ECO:0000269|PubMed:12011358, ECO:0000269|PubMed:17182701, ECO:0000269|PubMed:20057139, ECO:0000269|PubMed:20149347}.,FUNCTION: UDP-L-arabinose mutase involved in the biosynthesis of cell wall non-cellulosic polysaccharides. Catalyzes the interconvertion of UDP-L-arabinopyranose (UDP-Arap) and UDP-L-arabinofuranose (UDP-Araf). Preferentially catalyzes the formation of UDP-Arap from UDP-Araf. At thermodynamic equilibrium in vitro the ratio of the pyranose form over the furanose form is 90:10. Is probably active as heteromer in vivo. {ECO:0000269|PubMed:17182701, ECO:0000269|PubMed:20057139, ECO:0000269|PubMed:20149347}. ENOG411DQE7 ATXYN2,RXF12 O80596,Q9SM08,A0A1P8AUA7,A0A1P8AWH8 O80596_ARATH,Q9SM08_ARATH,A0A1P8AUA7_ARATH,A0A1P8AWH8_ARATH Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (T27I1.7 protein),F19C14.2 protein (Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein) (RXF12 protein) (Xylan endohydrolase),Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein ARA:AT1G10050-MONOMER;,ARA:AT1G58370-MONOMER; 118371,102459,121948,105768 Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (T27I1.7 protein),F19C14.2 protein (Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein) (RXF12 protein) (Xylan endohydrolase),Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein endo-1,4-beta-xylanase activity [GO:0031176]; carbohydrate metabolic process [GO:0005975],cell wall [GO:0005618]; endo-1,4-beta-xylanase activity [GO:0031176]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2201911;,locus:2016595; AT1G10050,AT1G58370 glycosyl hydrolase family 10 protein Os07g0456700 protein (Putative 1,4-beta-D xylan xylanohydrolase) (cDNA clone:J023130H08, full insert sequence) Q84YR7 Q84YR7_ORYSJ Os07g0456700 Os07g0456700 OSJNBa0027N13.120 OSNPB_070456700 ENOG411DQE4 SCPL45,SCPL46 Q93Y09,Q8VY01 SCP45_ARATH,SCP46_ARATH Serine carboxypeptidase-like 45 (EC 3.4.16.-),Serine carboxypeptidase-like 46 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 51803,51883 Serine carboxypeptidase-like 45 (EC 3.4.16.-),Serine carboxypeptidase-like 46 (EC 3.4.16.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}. locus:2010454;,locus:2051149; AT1G28110,AT2G33530 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) (Fragment),Os04g0396800 protein Q7F9I3,Q2R3G8,A0A0N7KIZ7,A0A0P0W9S6 Q7F9I3_ORYSJ,Q2R3G8_ORYSJ,A0A0N7KIZ7_ORYSJ,A0A0P0W9S6_ORYSJ Os04g0396800 Os04g0396800 OsJ_14632 OSJNBa0039C07.2 OSNPB_040396800,Os11g0522900 LOC_Os11g31980 Os11g0522900 OsJ_34064 OSNPB_110522900,Os04g0396800 OSNPB_040396800 ENOG411DQE5 SWC2 F4IP06,A0A1P8AZV3 SWC2_ARATH,A0A1P8AZV3_ARATH SWR1 complex subunit 2,DNA binding protein SWC2 FUNCTION: Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. {ECO:0000269|PubMed:17470967}. 42148,37682 SWR1 complex subunit 2,DNA binding protein SWC2 nucleus [GO:0005634]; cell differentiation [GO:0030154]; flower development [GO:0009908]; histone exchange [GO:0043486]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; histone exchange [GO:0043486]; regulation of transcription, DNA-templated [GO:0006355] locus:2040580; AT2G36740 vacuolar protein sorting-associated protein 72 Os08g0192400 protein A0A0N7KPE4 A0A0N7KPE4_ORYSJ Os08g0192400 OSNPB_080192400 ENOG411DQE2 SYP123,SYP125,SYP124 Q9ZQZ8,Q9SXB0,O64791 SY123_ARATH,SY125_ARATH,SY124_ARATH Syntaxin-123 (AtSYP123),Syntaxin-125 (AtSYP125),Syntaxin-124 (AtSYP124) FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-449836; 34483,33826,34468 Syntaxin-123 (AtSYP123),Syntaxin-125 (AtSYP125),Syntaxin-124 (AtSYP124) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; transport vesicle [GO:0030133]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; pollen tube growth [GO:0009860]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] locus:2125487;,locus:2202049;,locus:2197749; AT4G03330,AT1G11250,AT1G61290 K08486 syntaxin 1B 2 3 Os06g0590500 protein (Putative syntaxin-related protein Nt-syr1) (cDNA clone:002-121-F10, full insert sequence) Q69X85 Q69X85_ORYSJ Os06g0590500 Os06g0590500 OsJ_21838 OSNPB_060590500 P0633E08.24 ENOG411DQE3 GLPK,NHO1 Q9M8L4,F4HS76 GLPK_ARATH,F4HS76_ARATH Glycerol kinase (Glycerokinase) (EC 2.7.1.30) (ATP:glycerol 3-phosphotransferase) (Protein GLYCEROL INSENSITIVE 1) (Protein NONHOST RESISTANCE TO P. S. PHASEOLICOLA 1),Actin-like ATPase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditons, but mutant plants accumulate high levels of glycerol, can grow on synthetic medium containing glycerol and have increased resistance to salt, cold, osmotic and drought stresses. {ECO:0000269|PubMed:14756771}. FUNCTION: Key enzyme in the regulation of glycerol uptake and metabolism. Required for resistance to nonhost Pseudomonas bacteria and to the pathogenic fungus B.cinerea. {ECO:0000269|PubMed:11226196, ECO:0000269|PubMed:12626746, ECO:0000269|PubMed:14756771}. PATHWAY: Polyol metabolism; glycerol degradation via glycerol kinase pathway; sn-glycerol 3-phosphate from glycerol: step 1/1. R-ATH-75109; PPAR signaling pathway (03320),Metabolic pathways (01100),Plant-pathogen interaction (04626),Glycerolipid metabolism (00561) 2.7.1.30 56437,52483 Glycerol kinase (Glycerokinase) (EC 2.7.1.30) (ATP:glycerol 3-phosphotransferase) (Protein GLYCEROL INSENSITIVE 1) (Protein NONHOST RESISTANCE TO P. S. PHASEOLICOLA 1),Actin-like ATPase superfamily protein cytosol [GO:0005829]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glycerol kinase activity [GO:0004370]; defense response to bacterium [GO:0042742]; glycerol catabolic process [GO:0019563]; glycerol-3-phosphate biosynthetic process [GO:0046167]; response to bacterium [GO:0009617]; response to karrikin [GO:0080167]; response to microbial phytotoxin [GO:0010188]; response to molecule of bacterial origin [GO:0002237]; triglyceride metabolic process [GO:0006641],glycerol kinase activity [GO:0004370]; carbohydrate metabolic process [GO:0005975]; glycerol-3-phosphate metabolic process [GO:0006072] TISSUE SPECIFICITY: Highly expressed in germinating seeds and senescent leaves, and at lower levels in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:14756771}. locus:2198928; AT1G80460 Glycerol kinase Glycerol kinase-like protein (Os04g0647800 protein) Q0ILB9 Q0ILB9_ORYSJ OGK1 Os04g0647800 OsJ_16410 OSNPB_040647800 ENOG411DQE0 IREG3 Q8W4E7 S40A3_ARATH Solute carrier family 40 member 3, chloroplastic (Ferroportin-3) (Iron-regulated transporter 3) (AtIREG3) (Protein MULTIPLE ANTIBIOTIC RESISTANCE 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants are resistant to several aminoglycoside antibiotics, such as kanamycin, streptomycin, gentamicin, amikacin, tobramycin and apramycin. {ECO:0000269|PubMed:19675150, ECO:0000269|PubMed:20592808}. resistant to several aminoglycoside antibiotics including kanamycin streptomycin gentamicin amikacin tobramycin and apramycin Resistant to kanamycin, streptomycin, gentamicin, amikacin, tobramycin, and apramycin-A. Lloyd-2009 FUNCTION: Probable plastid transporter that may play a role in iron chelation, storage or sequestration under limiting iron conditions. In presence of exogenous antibiotics, may allow opportunistic entry of multiple aminoglycoside antibiotics into the chloroplast. {ECO:0000269|PubMed:19675150, ECO:0000269|PubMed:20592808}. 64486 Solute carrier family 40 member 3, chloroplastic (Ferroportin-3) (Iron-regulated transporter 3) (AtIREG3) (Protein MULTIPLE ANTIBIOTIC RESISTANCE 1) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; iron ion transmembrane transporter activity [GO:0005381]; transporter activity [GO:0005215]; cellular iron ion homeostasis [GO:0006879] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:19675150}. locus:2148523; AT5G26820 solute carrier family 40 member Solute carrier family 40 member 2, chloroplastic Q2QNK7 S40A2_ORYSJ Os12g0562100 LOC_Os12g37530 FUNCTION: May be involved in iron transport and iron homeostasis. {ECO:0000250}. ENOG411DQE1 Q9SA89,Q9SVG3,Q9SVG4,A0A1P8ATP1 BBE12_ARATH,BBE21_ARATH,RETOL_ARATH,A0A1P8ATP1_ARATH Berberine bridge enzyme-like 12 (AtBBE-like 12) (EC 1.1.1.-),Berberine bridge enzyme-like 21 (AtBBE-like 21) (EC 1.1.1.-),Berberine bridge enzyme-like 19 (AtBBE-like 19) (AtBBE-like 20) (EC 1.1.1.-) (Reticuline oxidase-like protein) (EC 1.21.-.-),FAD-binding Berberine family protein ARA:AT1G30740-MONOMER;,ARA:AT4G20840-MONOMER;,ARA:AT4G20830-MONOMER; 1.1.1.-,1.1.1.-; 1.21.-.- 59870,60144,63559,60243 Berberine bridge enzyme-like 12 (AtBBE-like 12) (EC 1.1.1.-),Berberine bridge enzyme-like 21 (AtBBE-like 21) (EC 1.1.1.-),Berberine bridge enzyme-like 19 (AtBBE-like 19) (AtBBE-like 20) (EC 1.1.1.-) (Reticuline oxidase-like protein) (EC 1.21.-.-),FAD-binding Berberine family protein cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],apoplast [GO:0048046]; cell wall [GO:0005618]; plasma membrane [GO:0005886]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],anchored component of membrane [GO:0031225]; apoplast [GO:0048046]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; response to oxidative stress [GO:0006979],flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2204554;,locus:2121544;,locus:2121539; AT1G30740,AT4G20840,AT4G20830 reticuline oxidase-like protein-like NA NA NA NA NA NA NA ENOG411EB9C MYB51 O49782 MYB51_ARATH Transcription factor MYB51 (Myb-related protein 51) (AtMYB51) (Protein HIGH INDOLIC GLUCOSINOLATE 1) (Transcription factor HIG1) DISRUPTION PHENOTYPE: Low levels of indolic glucosinolates. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754}. compromised in indolic glucosinolate biosynthesis. Low glucosinolate levels-U. Flugge-2007 FUNCTION: Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. 39154 Transcription factor MYB51 (Myb-related protein 51) (AtMYB51) (Protein HIGH INDOLIC GLUCOSINOLATE 1) (Transcription factor HIG1) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; indole glucosinolate biosynthetic process [GO:0009759]; induced systemic resistance [GO:0009682]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to bacterium [GO:0009617]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in vegetative parts of the plant, mainly in mature rosette leaves and in trichomes. Detected in roots, but not in mature flowers or siliques. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. locus:2027463; AT1G18570 MYB51 AtMYB51 BW51A BW51B HIG1 MYB51 (MYB DOMAIN PROTEIN 51) NA NA NA NA NA NA NA ENOG411EB9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF547 NA NA NA NA NA NA NA ENOG411EG62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA7K NEN3,NAC45 Q9CA74,A0A1P8APH8,A0A1P8API6 NEN3_ARATH,A0A1P8APH8_ARATH,A0A1P8API6_ARATH Protein NEN3 (NAC45/NAC86-dependent exonuclease-domain protein 3) (EC 3.1.11.-),Polynucleotidyl transferase, ribonuclease H-like superfamily protein FUNCTION: Probable exonuclease that may be involved in enuclation of sieve elements. {ECO:0000305|PubMed:25081480}. 3.1.11.- 55633,39177,39437 Protein NEN3 (NAC45/NAC86-dependent exonuclease-domain protein 3) (EC 3.1.11.-),Polynucleotidyl transferase, ribonuclease H-like superfamily protein 3'-5' exonuclease activity [GO:0008408]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676],transferase activity [GO:0016740],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2019100; AT1G74390 EXOIII NA NA NA NA NA NA NA ENOG411EA01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EHXV KIN1,KIN2 P18612,P31169 KIN1_ARATH,KIN2_ARATH Stress-induced protein KIN1,Stress-induced protein KIN2 (Cold-induced protein COR6.6) 6495,6551 Stress-induced protein KIN1,Stress-induced protein KIN2 (Cold-induced protein COR6.6) cold acclimation [GO:0009631]; red or far-red light signaling pathway [GO:0010017]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414] locus:2146047;,locus:2146057; AT5G15960,AT5G15970 stress-induced protein NA NA NA NA NA NA NA ENOG411EHXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0565150 protein Q6Z7E4 Q6Z7E4_ORYSJ Os02g0565150 Os02g0565150 OSNPB_020565150 P0020C11.24 ENOG411EHXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0160000 protein) (Os12g0160100 protein) (cDNA clone:J013000A01, full insert sequence) Q2QXE9 Q2QXE9_ORYSJ Os12g0160100 LOC_Os12g06280 Os12g0160000 OsJ_35300 OSNPB_120160100 ENOG411EHXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXG Q8S8T7,F4JJD6 Q8S8T7_ARATH,F4JJD6_ARATH Uncharacterized protein At2g40955,Uncharacterized protein 80171 Uncharacterized protein At2g40955,Uncharacterized protein locus:2828245;,locus:505006469; AT2G40955,AT4G15096 NA NA NA NA NA NA NA NA ENOG411EHXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0192550 protein C7IXV1 C7IXV1_ORYSJ Os01g0192550 Os01g0192550 OSNPB_010192550 ENOG411EHXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) Os07g0237200 protein,Os07g0238600 protein,Os07g0238500 protein (cDNA clone:002-119-H03, full insert sequence) B9FWB7,B9FWB9,Q8LGX9 B9FWB7_ORYSJ,B9FWB9_ORYSJ,Q8LGX9_ORYSJ Os07g0237200 OsJ_23645 OSNPB_070237200,Os07g0238600 OsJ_23650 OSNPB_070238600,P0565A07.125 Os07g0238500 OsJ_23649 OSNPB_070238500 ENOG411EHXK AGP5,AGP10 Q8LCE4,Q9M0S4 AGP5_ARATH,AGP10_ARATH Classical arabinogalactan protein 5,Classical arabinogalactan protein 10 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 12597,12071 Classical arabinogalactan protein 5,Classical arabinogalactan protein 10 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Expressed at a low level in flowers and siliques. {ECO:0000269|PubMed:11006345}.,TISSUE SPECIFICITY: Predominantly expressed in flowers and at a lower level in roots and siliques. {ECO:0000269|PubMed:11006345}. locus:2206707;,locus:2122353; AT1G35230,AT4G09030 NA NA NA NA NA NA NA NA ENOG411EHXJ PSY1 Q941C7 PSY1_ARATH Protein PSY1 [Cleaved into: Tyrosine-sulfated glycopeptide 1] FUNCTION: Promotes cellular proliferation and expansion (PubMed:17989228). Induces outward H(+) fluxes in roots (PubMed:25267325). {ECO:0000269|PubMed:17989228, ECO:0000269|PubMed:25267325}. 7928 Protein PSY1 [Cleaved into: Tyrosine-sulfated glycopeptide 1] extracellular region [GO:0005576]; growth factor activity [GO:0008083]; chloroplast organization [GO:0009658]; regulation of cell proliferation [GO:0042127] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and shoot apical meristems. {ECO:0000269|PubMed:17989228}. locus:2178773; AT5G58650 plant peptide containing sulfated tyrosine 1 NA NA NA NA NA NA NA ENOG411EHXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0557800 protein) (cDNA clone:002-181-G03, full insert sequence) Q2R2M1 Q2R2M1_ORYSJ Os11g0557800 LOC_Os11g35350 Os11g0557800 OsJ_34258 OSNPB_110557800 ENOG411EHX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHX1 A0A1P8AYI9,F4IIH8 A0A1P8AYI9_ARATH,F4IIH8_ARATH RING/U-box superfamily protein 12143,14506 RING/U-box superfamily protein AT2G15580 Zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EHX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UDP-Glycosyltransferase NA NA NA NA NA NA NA ENOG411EHX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HEAT repeat NA NA NA NA NA NA NA ENOG411E3KZ RFI2 O82239 RFI2_ARATH E3 ubiquitin-protein ligase RFI2 (EC 2.3.2.27) (Protein RED AND FAR-RED INSENSITIVE 2) DISRUPTION PHENOTYPE: Photomorphogenic mutant insensitive to red and far-red light leading to long hypocotyls. Flowers early particularly under long days (PubMed:16709197, PubMed:16384903). Also impaired in phytochrome-mediated end-of-day far-red light response, cotyledon expansion, far-red light block of greening, and light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS) (PubMed:16384903). Enhanced expression of CONSTANS (CO) and FLOWERING LOCUS T (FT) under long days and short days (PubMed:16709197). {ECO:0000269|PubMed:16384903, ECO:0000269|PubMed:16709197}. FUNCTION: Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light (PubMed:16709197, PubMed:16384903). Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS) (PubMed:16384903). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering (PubMed:16709197). {ECO:0000269|PubMed:16384903, ECO:0000269|PubMed:16709197}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305|PubMed:15644464}. 2.3.2.27 39937 E3 ubiquitin-protein ligase RFI2 (EC 2.3.2.27) (Protein RED AND FAR-RED INSENSITIVE 2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; circadian rhythm [GO:0007623]; flower development [GO:0009908]; negative regulation of gene expression [GO:0010629]; red, far-red light phototransduction [GO:0009585]; regulation of gene expression [GO:0010468]; regulation of photoperiodism, flowering [GO:2000028]; regulation of red or far-red light signaling pathway [GO:0090227]; response to far red light [GO:0010218]; response to red light [GO:0010114] locus:2043438; AT2G47700 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EG10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1348) NA NA NA NA NA NA NA ENOG411E9GG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411E9GF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein 1589 of unknown function (A_thal_3526) Os05g0212400 protein (Fragment) A0A0P0WJF5 A0A0P0WJF5_ORYSJ Os05g0212400 OSNPB_050212400 ENOG411E9GE PIP1-2,PIP1-1,PIP1.4,PIP1-3,PIP1-5,PIP1B,PIP1C Q06611,P61837,Q39196,Q08733,Q8LAA6,B9DFR9,A8MSF6 PIP12_ARATH,PIP11_ARATH,PIP14_ARATH,PIP13_ARATH,PIP15_ARATH,B9DFR9_ARATH,A8MSF6_ARATH Aquaporin PIP1-2 (AtPIP1;2) (Plasma membrane intrinsic protein 1b) (PIP1b) (Transmembrane protein A) (AthH2) (TMP-A),Aquaporin PIP1-1 (AtPIP1;1) (Plasma membrane aquaporin-1) (Plasma membrane intrinsic protein 1a) (PIP1a),Probable aquaporin PIP1-4 (Plasma membrane intrinsic protein 1-4) (AtPIP1;4) (Transmembrane protein C) (TMP-C),Aquaporin PIP1-3 (AtPIP1;3) (Plasma membrane intrinsic protein 1c) (PIP1c) (Transmembrane protein B) (TMP-B),Probable aquaporin PIP1-5 (AtPIP1;5) (Plasma membrane intrinsic protein 1d) (PIP1d),AT2G45960 protein (Plasma membrane intrinsic protein 1B),Plasma membrane intrinsic protein 1C Reduced root hydrostatic hydraulic conductivity-C. Maurel-2010 FUNCTION: Water channel required to facilitate the transport of water across cell membrane. Essential for the water permeability of the plasma membrane and for the morphology of the root system. Its function is impaired by Hg(2+). Inhibited by cytosolic acidosis which occurs during anoxia in roots. {ECO:0000269|PubMed:14508488}.,FUNCTION: Water channel required to facilitate the transport of water across cell membrane. Its function is impaired by Hg(2+). {ECO:0000269|PubMed:7920711}.,FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. 30598,30689,30693,30633,30647,29132,22518 Aquaporin PIP1-2 (AtPIP1;2) (Plasma membrane intrinsic protein 1b) (PIP1b) (Transmembrane protein A) (AthH2) (TMP-A),Aquaporin PIP1-1 (AtPIP1;1) (Plasma membrane aquaporin-1) (Plasma membrane intrinsic protein 1a) (PIP1a),Probable aquaporin PIP1-4 (Plasma membrane intrinsic protein 1-4) (AtPIP1;4) (Transmembrane protein C) (TMP-C),Aquaporin PIP1-3 (AtPIP1;3) (Plasma membrane intrinsic protein 1c) (PIP1c) (Transmembrane protein B) (TMP-B),Probable aquaporin PIP1-5 (AtPIP1;5) (Plasma membrane intrinsic protein 1d) (PIP1d),AT2G45960 protein (Plasma membrane intrinsic protein 1B),Plasma membrane intrinsic protein 1C integral component of plasma membrane [GO:0005887]; transporter activity [GO:0005215]; ion transmembrane transport [GO:0034220],chloroplast envelope [GO:0009941]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to water deprivation [GO:0009414]; water transport [GO:0006833],integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to water deprivation [GO:0009414]; water transport [GO:0006833],chloroplast [GO:0009507]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to water deprivation [GO:0009414]; water transport [GO:0006833],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Widely expressed. Expressed in roots and above ground. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Widely expressed. Expressed in roots, above ground and in flower buds. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:7920711}.,TISSUE SPECIFICITY: Predominantly expressed in roots and green siliques. Also expressed above ground and in flower buds. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Expressed in roots, above ground, ripening fruit, flower buds, green siliques and senescing leaves. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:7920711}.,TISSUE SPECIFICITY: Predominantly expressed in green siliques. Also expressed above ground, in roots and flower buds. {ECO:0000269|PubMed:11806824}. locus:2082822;,locus:2126026;,locus:2025391;,locus:2117939; AT2G45960,AT3G61430,AT4G00430,AT1G01620,AT4G23400 Major intrinsic protein Probable aquaporin PIP1-2 (OsPIP1;2) (Plasma membrane intrinsic protein 1-2),Aquaporin PIP 1-3 (OsPIP1;3) (Plasma membrane intrinsic protein 1-3) (Water channel protein RWC3) (RWC-3) Q7XSQ9,Q9SXF8 PIP12_ORYSJ,PIP13_ORYSJ PIP1-2 Os04g0559700 LOC_Os04g47220 OsJ_015100 OSJNBa0084K11.2,PIP1-3 RWC3 Os02g0823100 LOC_Os02g57720 OJ1136_C04.6 OsJ_008613 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}.,FUNCTION: Water channel required to facilitate the transport of water across cell membrane. Increases the capacity for root water uptake under water deficit. May play a role in drought avoidance in upland rice. {ECO:0000269|PubMed:15111723}. ENOG411E9GD LRK10L-2.7 F4HQ23,A0A1P8AQ99 LRL27_ARATH,A0A1P8AQ99_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.7),Protein kinase superfamily protein 2.7.11.1 98898,71793 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.7),Protein kinase superfamily protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2019688; AT1G66930 STYKc NA NA NA NA NA NA NA ENOG411E9GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0685200 protein Q655F1 Q655F1_ORYSJ Os06g0685200 OsJ_22410 OSNPB_060685200 P0009H10.36 ENOG411E9GB O49618 FBK94_ARATH Putative F-box/kelch-repeat protein At4g35120 44056 Putative F-box/kelch-repeat protein At4g35120 locus:2131621; AT4G35120 kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411E9GA LECRK12,LECRK11 Q7FK82,Q9M3E5 LRK12_ARATH,LRK11_ARATH Probable L-type lectin-domain containing receptor kinase I.2 (LecRK-I.2) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase I.1 (LecRK-I.1) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the fungus Alternaria brassicicola. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic fungus Alternaria brassicicola. {ECO:0000269|PubMed:25083911}. 2.7.11.1 73887,74913 Probable L-type lectin-domain containing receptor kinase I.2 (LecRK-I.2) (EC 2.7.11.1),Putative L-type lectin-domain containing receptor kinase I.1 (LecRK-I.1) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to fungus [GO:0050832] locus:2078332; AT3G45390,AT3G45330 lectin protein kinase family NA NA NA NA NA NA NA ENOG411E9GN NGA4 O82595 NGA4_ARATH B3 domain-containing transcription factor NGA4 (Protein NGATHA 4) Altered pistil morphology-C. Ferrandiz-2009 FUNCTION: Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}. 38512 B3 domain-containing transcription factor NGA4 (Protein NGATHA 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; leaf development [GO:0048366]; regulation of leaf morphogenesis [GO:1901371]; transcription, DNA-templated [GO:0006351] locus:2117007; AT4G01500 B3 NA NA NA NA NA NA NA ENOG411E9GK Q1PF36,A0A1P8B2K9,A0A1P8B2N5 Q1PF36_ARATH,A0A1P8B2K9_ARATH,A0A1P8B2N5_ARATH Uncharacterized protein 65531,50500,67756 Uncharacterized protein locus:2038967; AT2G20250 NA NA NA NA NA NA NA NA ENOG411E9GJ CIPK15 P92937,F4KAV7 CIPKF_ARATH,F4KAV7_ARATH CBL-interacting serine/threonine-protein kinase 15 (EC 2.7.11.1) (SNF1-related kinase 3.1) (SOS-interacting protein 2) (SOS2-like protein kinase PKS3) (Serine/threonine-protein kinase ATPK10),Non-specific serine/threonine protein kinase (EC 2.7.11.1) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. {ECO:0000269|PubMed:12194854}. 2.7.11.1 47928,43057 CBL-interacting serine/threonine-protein kinase 15 (EC 2.7.11.1) (SNF1-related kinase 3.1) (SOS-interacting protein 2) (SOS2-like protein kinase PKS3) (Serine/threonine-protein kinase ATPK10),Non-specific serine/threonine protein kinase (EC 2.7.11.1) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Ubiquitous. Co-expressed with CBL1 in guard cells. {ECO:0000269|PubMed:11402167, ECO:0000269|PubMed:12194854, ECO:0000269|PubMed:7824653}. locus:2181047; AT5G01810 CBL-interacting protein kinase 15 NA NA NA NA NA NA NA ENOG411E9GI Q9SHV5,Q9LQW4 CAP14_ARATH,CAP15_ARATH Putative clathrin assembly protein At2g01920,Putative clathrin assembly protein At1g14686 35721,38088 Putative clathrin assembly protein At2g01920,Putative clathrin assembly protein At1g14686 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897] locus:2045837;,locus:504956332; AT2G01920,AT1G14686 ANTH domain NA NA NA NA NA NA NA ENOG411E9GH SCL33 P0C883,A0A1P8AXN4 SCL33_ARATH,A0A1P8AXN4_ARATH Scarecrow-like protein 33 (AtSCL33) (GRAS family protein 12) (AtGRAS-12),GRAS family transcription factor FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 78101,74161 Scarecrow-like protein 33 (AtSCL33) (GRAS family protein 12) (AtGRAS-12),GRAS family transcription factor nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2066112; AT2G29060 scarecrow transcription factor family protein NA NA NA NA NA NA NA ENOG411E9GW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9GV Q8W495 Q8W495_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g00500) (Uncharacterized protein At4g00500; F6N23.21) 52168 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g00500) (Uncharacterized protein At4g00500; F6N23.21) hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] locus:2127048; AT4G00500 Lipase 3 N-terminal region NA NA NA NA NA NA NA ENOG411E9GU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9GT ADS3.2 Q9LVZ3 ADS32_ARATH Probable lipid desaturase ADS3.2, chloroplastic (EC 1.14.19.-) DISRUPTION PHENOTYPE: No visible phenotype and wild-type levels of both Hexadeca 7,10,13-trienoic acid (16:3(7Z,10Z,13Z)) and leaf chlorophyll content. {ECO:0000269|PubMed:15579662}. MISCELLANEOUS: ADS3.2 does not contribute to the FAD5 phenotype. {ECO:0000269|PubMed:15579662}. PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. {ECO:0000305}. ARA:AT3G15870-MONOMER; R-ATH-75105; 1.14.19.- 42343 Probable lipid desaturase ADS3.2, chloroplastic (EC 1.14.19.-) chloroplast membrane [GO:0031969]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; unsaturated fatty acid biosynthetic process [GO:0006636] locus:2093207; AT3G15870 Fatty acid desaturase NA NA NA NA NA NA NA ENOG411E9GS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0145700 protein (Unknow protein),Os05g0146100 protein,Os05g0146900 protein,Os05g0148101 protein,Os04g0307800 protein (Fragment) Q6ASS0,Q6ASR8,A0A0N7KK52,A0A0P0WIB1,A0A0P0W8D9 Q6ASS0_ORYSJ,Q6ASR8_ORYSJ,A0A0N7KK52_ORYSJ,A0A0P0WIB1_ORYSJ,A0A0P0W8D9_ORYSJ Os05g0145700 Os05g0145700 OSJNBa0077J22.2 OSJNBb0015A05.8 OSNPB_050145700,Os05g0146100 OSJNBa0077J22.4 OSJNBb0015A05.10 OSNPB_050146100,Os05g0146900 OSNPB_050146900,Os05g0148101 OSNPB_050148101,Os04g0307800 OSNPB_040307800 ENOG411E9GR PBL19,PBL20 Q9LTC0,F4JPX3 PBL19_ARATH,PBL20_ARATH Probable serine/threonine-protein kinase PBL19 (EC 2.7.11.1) (PBS1-like protein 19),Probable serine/threonine-protein kinase PBL20 (EC 2.7.11.1) (PBS1-like protein 20) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 46824,44219 Probable serine/threonine-protein kinase PBL19 (EC 2.7.11.1) (PBS1-like protein 19),Probable serine/threonine-protein kinase PBL20 (EC 2.7.11.1) (PBS1-like protein 20) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2151992;,locus:2129326; AT5G47070,AT4G17660 STYKc NA NA NA NA NA NA NA ENOG411E9GQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9GP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E9GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9GY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411E9G7 AGL82 Q9FIM0 AGL82_ARATH Agamous-like MADS-box protein AGL82 FUNCTION: Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. 34166 Agamous-like MADS-box protein AGL82 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2154588; AT5G58890 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E9G6 Q9LSF6 VTH21_ARATH Vacuolar iron transporter homolog 2.1 (Protein NODULIN-LIKE 21) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but decreased accumulation of iron in the root when grown under high iron concentration. {ECO:0000269|PubMed:21411332}. FUNCTION: Probable vacuolar iron transporter that may be involved in the regulation of iron distribution throughout the plant. {ECO:0000269|PubMed:21411332}. 23211 Vacuolar iron transporter homolog 2.1 (Protein NODULIN-LIKE 21) integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; intracellular sequestering of iron ion [GO:0006880]; manganese ion transmembrane transport [GO:0071421]; response to iron ion [GO:0010039] TISSUE SPECIFICITY: Highly expressed in roots. inflorescences and at lower levels in leaves. {ECO:0000269|PubMed:17028341}. locus:2090305; AT3G25190 VIT family NA NA NA NA NA NA NA ENOG411E9G5 F4HZT2 F4HZT2_ARATH Cysteine proteinases superfamily protein 37037 Cysteine proteinases superfamily protein locus:2030566; AT1G22080 Papain family cysteine protease NA NA NA NA NA NA NA ENOG411E9G4 DTX6,DTX5,DTX9 Q8RWF5,Q9SIA1,Q9C9M8,A0A1P8AS72,A0A1P8AS85,A0A1P8B1L7,F4HQ03 DTX6_ARATH,DTX5_ARATH,DTX9_ARATH,A0A1P8AS72_ARATH,A0A1P8AS85_ARATH,A0A1P8B1L7_ARATH,F4HQ03_ARATH Protein DETOXIFICATION 6 (AtDTX6) (Multidrug and toxic compound extrusion protein 6) (MATE protein 6),Protein DETOXIFICATION 5 (AtDTX5) (Multidrug and toxic compound extrusion protein 5) (MATE protein 5),Protein DETOXIFICATION 9 (AtDTX9) (Multidrug and toxic compound extrusion protein 9) (MATE protein 9),MATE efflux family protein,Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) R-ATH-425366; 51933,51306,53066,43099,37132,50807,51061 Protein DETOXIFICATION 6 (AtDTX6) (Multidrug and toxic compound extrusion protein 6) (MATE protein 6),Protein DETOXIFICATION 5 (AtDTX5) (Multidrug and toxic compound extrusion protein 5) (MATE protein 5),Protein DETOXIFICATION 9 (AtDTX9) (Multidrug and toxic compound extrusion protein 9) (MATE protein 9),MATE efflux family protein,Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2050230;,locus:2050175;,locus:2033334; AT2G04100,AT2G04090,AT1G66760 Mate efflux family protein NA NA NA NA NA NA NA ENOG411E9G3 Q9C972 Q9C972_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 24302-25416) ARA:GQT-1718-MONOMER; 36943 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 24302-25416) oxidoreductase activity [GO:0016491] locus:2034255; AT1G80320 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E9G2 BHLH77 Q9LK48 BH077_ARATH Transcription factor bHLH77 (Basic helix-loop-helix protein 77) (AtbHLH77) (bHLH 77) (Protein ACTIVATOR FOR CELL ELONGATION 3) (Transcription factor EN 87) (bHLH transcription factor bHLH077) 40757 Transcription factor bHLH77 (Basic helix-loop-helix protein 77) (AtbHLH77) (bHLH 77) (Protein ACTIVATOR FOR CELL ELONGATION 3) (Transcription factor EN 87) (bHLH transcription factor bHLH077) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2095198; AT3G23690 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E9G1 LHT7 Q84WE9,A0A1P8B3H8 LHTL7_ARATH,A0A1P8B3H8_ARATH Lysine histidine transporter-like 7,LYS/HIS transporter 7 FUNCTION: Amino acid transporter. {ECO:0000250}. 52294,37052 Lysine histidine transporter-like 7,LYS/HIS transporter 7 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021] locus:2132816; AT4G35180 LYS HIS transporter 7 NA NA NA NA NA NA NA ENOG411E9G0 IAA6 Q38824 IAA6_ARATH Auxin-responsive protein IAA6 (Indoleacetic acid-induced protein 6) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 21031 Auxin-responsive protein IAA6 (Indoleacetic acid-induced protein 6) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; de-etiolation [GO:0009704]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in stems and flowers. {ECO:0000269|PubMed:7658471}. locus:2011461; AT1G52830 AUX/IAA family NA NA NA NA NA NA NA ENOG411E9G9 Q6ICW9 Q6ICW9_ARATH At1g44890 (Inner membrane OXA1-like protein) 31882 At1g44890 (Inner membrane OXA1-like protein) integral component of membrane [GO:0016021]; pollen development [GO:0009555]; protein insertion into membrane [GO:0051205] locus:2194889; AT1G44890 NA NA NA NA NA NA NA NA ENOG411E9G8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411E0D2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E0DS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein Os06g0552900 protein (Putative SP3D) Q5Z9D9 Q5Z9D9_ORYSJ Os06g0552900 Os06g0552900 OsJ_21659 OSNPB_060552900 P0427B07.17 ENOG411E0DW COR413PM2,COR413PM1,COR413-PM1 Q9SVL6,O64834,Q9XIM7,F4IJE6 CRPM2_ARATH,CRPM3_ARATH,CRPM1_ARATH,F4IJE6_ARATH Cold-regulated 413 plasma membrane protein 2 (AtCOR413-PM2),Cold-regulated 413 plasma membrane protein 3 (AtCOR413-PM3),Cold-regulated 413 plasma membrane protein 1 (AtCOR413-PM1) (WCOR413-like protein),Cold regulated 413 plasma membrane 1 22754,21368,21605,18253 Cold-regulated 413 plasma membrane protein 2 (AtCOR413-PM2),Cold-regulated 413 plasma membrane protein 3 (AtCOR413-PM3),Cold-regulated 413 plasma membrane protein 1 (AtCOR413-PM1) (WCOR413-like protein),Cold regulated 413 plasma membrane 1 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; cellular response to water deprivation [GO:0042631]; cold acclimation [GO:0009631]; response to abscisic acid [GO:0009737],integral component of membrane [GO:0016021] locus:2077982;,locus:2049003;,locus:2044641; AT3G50830,AT2G23680,AT2G15970 Cold acclimation protein Cold acclimation protein COR413-PM1, putative, expressed (Cold acclimation protein WCOR413-like protein) (Os03g0767800 protein) (Putative cold acclimation protein) (cDNA clone:001-035-F05, full insert sequence) (cDNA clone:006-301-G09, full insert sequence) (cDNA clone:J013049B03, full insert sequence) Q9FUW4 Q9FUW4_ORYSJ OSJNBa0079B15.2 OSJNBb0106M04.19 LOC_Os03g55850 Os03g0767800 OSNPB_030767800 ENOG411E0DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED36 MFB13.3 Q9FLK7 Q9FLK7_ARATH Emb|CAB62594.1 (Plant calmodulin-binding protein-like protein) 54073 Emb|CAB62594.1 (Plant calmodulin-binding protein-like protein) calmodulin binding [GO:0005516] locus:2163148; AT5G61260 Plant calmodulin-binding domain NA NA NA NA NA NA NA ENOG411ED37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0228900 protein A0A0P0Y8E5 A0A0P0Y8E5_ORYSJ Os12g0228900 OSNPB_120228900 ENOG411ED34 F4I4K9 F4I4K9_ARATH F-box associated ubiquitination effector family protein 18952 F-box associated ubiquitination effector family protein locus:5019474617; AT1G23037 F-box associated domain NA NA NA NA NA NA NA ENOG411ED32 CRRSP8 Q9SH40 CRRS8_ARATH Cysteine-rich repeat secretory protein 8 31540 Cysteine-rich repeat secretory protein 8 extracellular region [GO:0005576] AT1G63560 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ED30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class I (I L M and V) NA NA NA NA NA NA NA ENOG411ED31 Q9ZVS2,Q66GM9,A0A1P8ARL5,F4JHW1 Q9ZVS2_ARATH,Q66GM9_ARATH,A0A1P8ARL5_ARATH,F4JHW1_ARATH F15K9.19 protein (Phenazine biosynthesis PhzC/PhzF protein) (Uncharacterized protein At1g03210),At4g02850 (Phenazine biosynthesis PhzC/PhzF family protein),Phenazine biosynthesis PhzC/PhzF protein 31710,33759,35092,34316 F15K9.19 protein (Phenazine biosynthesis PhzC/PhzF protein) (Uncharacterized protein At1g03210),At4g02850 (Phenazine biosynthesis PhzC/PhzF family protein),Phenazine biosynthesis PhzC/PhzF protein catalytic activity [GO:0003824]; biosynthetic process [GO:0009058],amino-acid racemase activity [GO:0047661]; biosynthetic process [GO:0009058],cytosol [GO:0005829]; catalytic activity [GO:0003824]; biosynthetic process [GO:0009058] locus:2014485;,locus:2140250;,locus:2140265; AT1G03210,AT4G02850,AT4G02860 phenazine biosynthesis PhzC PhzF family protein NA NA NA NA NA NA NA ENOG411ED38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA recA bacterial DNA recombination protein Os11g0302700 protein (RecA protein, expressed) (RecA protein, putative) (cDNA clone:J033071A21, full insert sequence) Q53QJ3 Q53QJ3_ORYSJ Os11g0302700 LOC_Os11g19720 Os11g0302700 OsJ_33715 OSNPB_110302700 ENOG411ED3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os04g0475800 protein A0A0P0WBV7 A0A0P0WBV7_ORYSJ Os04g0475800 OSNPB_040475800 ENOG411ED3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SpoU rRNA Methylase family NA NA NA NA NA NA NA ENOG411ED3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411ED3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411ED3A MTE17.15 Q9FJ66,Q9FGC6 Q9FJ66_ARATH,Q9FGC6_ARATH F-box protein, putative (DUF295) (Gb|AAC80597.1),F-box protein, putative (DUF295) 41512,18762 F-box protein, putative (DUF295) (Gb|AAC80597.1),F-box protein, putative (DUF295) locus:2173927;,locus:2158093; AT5G55440,AT5G67040 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411ED3M F9E10.28 Q9S7I7 Q9S7I7_ARATH At1g74870 (F25A4.16) (RING/U-box superfamily protein) (Uncharacterized protein At1g74870) (Uncharacterized protein F9E10.28) 33404 At1g74870 (F25A4.16) (RING/U-box superfamily protein) (Uncharacterized protein At1g74870) (Uncharacterized protein F9E10.28) locus:2027262; AT1G74870 Inherit from KOG: CCR4-NOT transcription complex subunit 4 NA NA NA NA NA NA NA ENOG411ED3J CYP702A8 F4J5G3 F4J5G3_ARATH Cytochrome P450, family 702, subfamily A, polypeptide 8 R-ATH-211916;R-ATH-5365859; 47044 Cytochrome P450, family 702, subfamily A, polypeptide 8 endoplasmic reticulum [GO:0005783]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; zinc ion binding [GO:0008270]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] locus:2102876; AT3G30290 Cytochrome P450 NA NA NA NA NA NA NA ENOG411ED3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Radical SAM superfamily NA NA NA NA NA NA NA ENOG411ED3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Methyl-CpG binding domain protein NA NA NA NA NA NA NA ENOG411ED3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family NA NA NA NA NA NA NA ENOG411ED3R HHO1 Q9LS00,A0A1I9LLU5 HHO1_ARATH,A0A1I9LLU5_ARATH Transcription factor HHO1 (MYB-domain transcription factor HHO1) (Protein HRS1 HOMOLOG 1),Myb-like transcription factor family protein FUNCTION: Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}. 40370,29479 Transcription factor HHO1 (MYB-domain transcription factor HHO1) (Protein HRS1 HOMOLOG 1),Myb-like transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to phosphate starvation [GO:0016036]; regulation of transcription, DNA-templated [GO:0006355]; response to nitrate starvation [GO:0090548]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2085984; AT3G25790 Transcription factor NA NA NA NA NA NA NA ENOG411ED3S PER33,PER32,PER34 P24101,Q9LHB9,Q9SMU8 PER33_ARATH,PER32_ARATH,PER34_ARATH Peroxidase 33 (Atperox P33) (EC 1.11.1.7) (ATPCa) (Neutral peroxidase C) (PERC),Peroxidase 32 (Atperox P32) (EC 1.11.1.7) (ATP16a) (PRXR3),Peroxidase 34 (Atperox P34) (EC 1.11.1.7) (ATPCb) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: May be implicated in the systemic acquired resistance response via the salicylic acid signal transduction pathway.,FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: Exhibits a Ca(2+)-pectate binding affinity which could be interpreted in vivo as a specificity to interact with the pectic structure of the cell wall.,FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: May be implicated in the systemic acquired resistance response via the salicylic acid signal transduction pathway. Exhibits a Ca(2+)-pectate binding affinity which could be interpreted in vivo as a specificity to interact with the pectic structure of the cell wall. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT3G49110-MONOMER;,ARA:AT3G32980-MONOMER;,ARA:AT3G49120-MONOMER; 1.11.1.7 38941,38847,38832 Peroxidase 33 (Atperox P33) (EC 1.11.1.7) (ATPCa) (Neutral peroxidase C) (PERC),Peroxidase 32 (Atperox P32) (EC 1.11.1.7) (ATP16a) (PRXR3),Peroxidase 34 (Atperox P34) (EC 1.11.1.7) (ATPCb) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; hydrogen peroxide catabolic process [GO:0042744]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; reactive oxygen species metabolic process [GO:0072593]; response to light stimulus [GO:0009416]; response to oxidative stress [GO:0006979]; unidimensional cell growth [GO:0009826],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to cytokinin [GO:0009735]; response to oxidative stress [GO:0006979],apoplast [GO:0048046]; cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; hydrogen peroxide catabolic process [GO:0042744]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; reactive oxygen species metabolic process [GO:0072593]; response to cytokinin [GO:0009735]; response to light stimulus [GO:0009416]; response to oxidative stress [GO:0006979]; unidimensional cell growth [GO:0009826] DEVELOPMENTAL STAGE: Up-regulated during leaf development. {ECO:0000269|Ref.14}. TISSUE SPECIFICITY: Expressed in roots.,TISSUE SPECIFICITY: Strongly expressed in roots. {ECO:0000269|PubMed:9807821, ECO:0000269|Ref.11}.,TISSUE SPECIFICITY: Preferentially expressed in roots, but also detected in flowers, leaves and stems. locus:2101298;,locus:2097273;,locus:2101318; AT3G49110,AT3G32980,AT3G49120 Peroxidase NA NA NA NA NA NA NA ENOG411ED3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0235651 protein,Os08g0235600 protein A0A0P0XDB1,A0A0P0XDC6 A0A0P0XDB1_ORYSJ,A0A0P0XDC6_ORYSJ Os08g0235651 OSNPB_080235651,Os08g0235600 OSNPB_080235600 ENOG411ED3Q SPL1,ZCF61 Q94HV7,A0A1P8AP06,A0A1P8ANZ5,A0A1P8AP03 SPL1P_ARATH,A0A1P8AP06_ARATH,A0A1P8ANZ5_ARATH,A0A1P8AP03_ARATH E3 ubiquitin-protein ligase SPL1 (EC 2.3.2.27) (DIAP1-like protein 2) (RING-type E3 ubiquitin transferase SPL1) (SP1-like protein 1),E3 Ubiquitin ligase family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased disease symptoms and cell death after inoculation with an avirulent strain of Pseudomonas syringae pv. tomato DC3000. {ECO:0000269|PubMed:20972793}. Susceptible to avirulent bacteria-F. Song-2011 FUNCTION: Possesses E3 ubiquitin-protein ligase activity. {ECO:0000250|UniProtKB:Q8L7N4}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 37729,33853,32810,30021 E3 ubiquitin-protein ligase SPL1 (EC 2.3.2.27) (DIAP1-like protein 2) (RING-type E3 ubiquitin transferase SPL1) (SP1-like protein 1),E3 Ubiquitin ligase family protein chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; organelle organization [GO:0006996],integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842]; organelle organization [GO:0006996] locus:2202882; AT1G59560 E3 Ubiquitin ligase NA NA NA NA NA NA NA ENOG411EB4V RBL17,RBL16 B3H707,Q84WG3 RBL17_ARATH,RBL16_ARATH Rhomboid-like protein 17, chloroplastic (AtRBL17),Rhomboid-like protein 16, chloroplastic (AtRBL16) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:16895613}.,FUNCTION: Rhomboid-type serine protease that catalyzes intramembrane proteolysis. May cleave the plastid translocon component Tic40. {ECO:0000303|PubMed:17327256}. 34678,35451 Rhomboid-like protein 17, chloroplastic (AtRBL17),Rhomboid-like protein 16, chloroplastic (AtRBL16) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2037328;,locus:2037333; AT1G74140,AT1G74130 Rhomboid family NA NA NA NA NA NA NA ENOG411EHVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDW9 Q9C735,Q9C737,Q9C736,A0A1P8AV88,A0A1P8APW1 Q9C735_ARATH,Q9C737_ARATH,Q9C736_ARATH,A0A1P8AV88_ARATH,A0A1P8APW1_ARATH Auxin-responsive GH3 family protein (Nt-gh3 deduced protein, putative),At1g48690 (Auxin-regulated protein, putative) (Auxin-responsive GH3 family protein),Auxin-responsive GH3 family protein ARA:GQT-1161-MONOMER;,ARA:GQT-969-MONOMER;,ARA:GQT-42-MONOMER; R-ATH-6798695; 64125,21555,59143,64510,47145 Auxin-responsive GH3 family protein (Nt-gh3 deduced protein, putative),At1g48690 (Auxin-regulated protein, putative) (Auxin-responsive GH3 family protein),Auxin-responsive GH3 family protein locus:2008134;,locus:2008114;,locus:2008124; AT1G48660,AT1G48690,AT1G48670 Auxin-responsive GH3 family protein NA NA NA NA NA NA NA ENOG411EDW7 Q6E240,Q9LVR4,Q9LHD9,Q9LVR3,Q9SMN4 U496E_ARATH,U496F_ARATH,U496C_ARATH,U496G_ARATH,U496J_ARATH UPF0496 protein At3g28310/At3g28320,UPF0496 protein At5g66660,UPF0496 protein At3g28270,UPF0496 protein At5g66670,UPF0496 protein At3g48650 42546,44954,41613,45597,32014 UPF0496 protein At3g28310/At3g28320,UPF0496 protein At5g66660,UPF0496 protein At3g28270,UPF0496 protein At5g66670,UPF0496 protein At3g48650 integral component of membrane [GO:0016021],extrinsic component of cytoplasmic side of plasma membrane [GO:0031234]; extrinsic component of endosome membrane [GO:0031313]; integral component of membrane [GO:0016021]; cellular response to water deprivation [GO:0042631] locus:2095405;locus:2095425;,locus:2173639;,locus:2095395;,locus:2173649; AT3G28310AT3G28320;,AT5G66660,AT3G28270,AT5G66670,AT3G48650 Protein of unknown function (DUF677) NA NA NA NA NA NA NA ENOG411EB4E Q9STV1,A0A1P8B5E6 Q9STV1_ARATH,A0A1P8B5E6_ARATH LG27/30-like gene (Rhamnogalacturonate lyase family protein),Rhamnogalacturonate lyase family protein 73609,60416 LG27/30-like gene (Rhamnogalacturonate lyase family protein),Rhamnogalacturonate lyase family protein vacuolar membrane [GO:0005774]; carbohydrate binding [GO:0030246]; lyase activity [GO:0016829]; carbohydrate metabolic process [GO:0005975],carbohydrate binding [GO:0030246]; lyase activity [GO:0016829] locus:2136007; AT4G24430 Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411EDW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDWB HR1,HR3,HR4 Q9SCS9,Q9SCS7,Q9SCS6,A0A1I9LLF3 HR1_ARATH,HR3_ARATH,HR4_ARATH,A0A1I9LLF3_ARATH RPW8-like protein 1 (AtHR1),RPW8-like protein 3 (AtHR3),RPW8-like protein 4 (AtHR4),Homolog of RPW8 4 FUNCTION: Probable disease resistance (R) protein. {ECO:0000305}. MISCELLANEOUS: Ecotypes susceptible to Erysiphe cichoracearum, such as cv. Columbia, are lacking RPW8.1 and RPW8.2 but contain in place HR4. {ECO:0000305|PubMed:11141561, ECO:0000305|PubMed:15155802}. 22344,24690,23389,16607 RPW8-like protein 1 (AtHR1),RPW8-like protein 3 (AtHR3),RPW8-like protein 4 (AtHR4),Homolog of RPW8 4 integral component of membrane [GO:0016021]; plant-type hypersensitive response [GO:0009626]; response to fungus [GO:0009620],integral component of membrane [GO:0016021]; plant-type hypersensitive response [GO:0009626]; response to bacterium [GO:0009617]; response to ethylene [GO:0009723]; response to external biotic stimulus [GO:0043207]; response to fungus [GO:0009620]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to symbiotic bacterium [GO:0009609]; response to symbiotic fungus [GO:0009610] locus:2098700;,locus:2098725;,locus:2098740; AT3G50450,AT3G50470,AT3G50480 hr3 mla10 hr3 (homolog of rpw8 3) NA NA NA NA NA NA NA ENOG411EDWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACTIN NA NA NA NA NA NA NA ENOG411EDWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family E3 ubiquitin-protein ligase (EC 2.3.2.27) A0A0P0UY32 A0A0P0UY32_ORYSJ Os01g0121900 OSNPB_010121900 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411EDWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 NA NA NA NA NA NA NA ENOG411EFV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand NA NA NA NA NA NA NA ENOG411EFV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3123) Expressed protein (Os03g0622400 protein),Os03g0622900 protein Q851U8,A0A0P0W0W8 Q851U8_ORYSJ,A0A0P0W0W8_ORYSJ Os03g0622400 LOC_Os03g42450 OsJ_11770 OSJNBb0111B07.24 OSNPB_030622400,Os03g0622900 OSNPB_030622900 ENOG411EFV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family UPF0047 NA NA NA NA NA NA NA ENOG411EFV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0503100 protein Q60EA4 Q60EA4_ORYSJ Os05g0503100 OSJNBa0017K09.17 OSJNBb0048K05.2 OSNPB_050503100 ENOG411EFV7 F12K2.15 Q9XIN4 Q9XIN4_ARATH Transmembrane protein (Uncharacterized protein At2g27270) (Uncharacterized protein F12K2.15) 26136 Transmembrane protein (Uncharacterized protein At2g27270) (Uncharacterized protein F12K2.15) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] locus:2039626; AT2G27270 NA NA NA NA NA NA NA NA ENOG411EFV6 JAZ13 F4J078 JAZ13_ARATH Protein JAZ13 (Jasmonate ZIM domain-containing protein 13) FUNCTION: Non-TIFY functional repressor of jasmonate (JA)-mediated growth and defense responses. Intrinsically resistant to JA-induced turnover, probably due to the absence of the canonical degron that strongly interacts with COI1 in the presence of JA-Ile in the TIFY/JAZ proteins. {ECO:0000269|PubMed:25846245}. 14051 Protein JAZ13 (Jasmonate ZIM domain-containing protein 13) nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; jasmonic acid mediated signaling pathway [GO:0009867]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:4010713768; AT3G22275 NA NA NA NA NA NA NA NA ENOG411EFV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411EFV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rft protein NA NA NA NA NA NA NA ENOG411EFVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EFVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411EFVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVA LEA37 Q9M349 LEA37_ARATH Late embryogenesis abundant protein 37 14418 Late embryogenesis abundant protein 37 mitochondrion [GO:0005739]; response to stress [GO:0006950] locus:2084450; AT3G53770 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EFVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q7G3R5 Q7G3R5_ORYSJ Os10g0335000 LOC_Os10g18870 OSNPB_100335000 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EFVF F4I8U3,Q9SJ98 Y1056_ARATH,Y2467_ARATH Putative B3 domain-containing protein At1g05615,B3 domain-containing protein At2g24670 19775,29040 Putative B3 domain-containing protein At1g05615,B3 domain-containing protein At2g24670 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:504956227;,locus:2046648; AT1G05615,AT2G24670 Has 61 Blast hits to 61 proteins in 2 species Archae - 0 NA NA NA NA NA NA NA ENOG411EFVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVD T10K17.170 Q9M2Q2 Q9M2Q2_ARATH Emsy N Terminus (ENT) domain-containing protein (Uncharacterized protein T10K17.170) 24986 Emsy N Terminus (ENT) domain-containing protein (Uncharacterized protein T10K17.170) defense response to fungus [GO:0050832] locus:2095858; AT3G57960 ENT domain NA NA NA NA NA NA NA ENOG411EFVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10 kDa prolamin Q0DN94 PROA_ORYSJ Os03g0766100 LOC_Os03g55730 OSJNBa0079B15 FUNCTION: Seed storage protein; serves as a source of nitrogen, carbon and sulfur for the young developing seedling. ENOG411EFVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA0J Q9C9R4 BRTL2_ARATH Probable mitochondrial adenine nucleotide transporter BTL2 (Adenine nucleotide transporter BT1-like protein 2) FUNCTION: Probable mitochondrial adenylate carrier that catalyzes the transport of ATP, ADP and AMP. {ECO:0000250}. 45822 Probable mitochondrial adenine nucleotide transporter BTL2 (Adenine nucleotide transporter BT1-like protein 2) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839] locus:2194714; AT1G78180 Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EG6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MOSC domain NA NA NA NA NA NA NA ENOG411EA0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR_TYP NA NA NA NA NA NA NA ENOG411EG6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EA0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Zinc phosphodiesterase which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation by removing a 3'-trailer from precursor tRNA (By similarity) NA NA NA NA NA NA NA ENOG411EG6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase NA NA NA NA NA NA NA ENOG411EKME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease family protein OTU-like cysteine protease-like (Os02g0819500 protein) (cDNA clone:001-131-F04, full insert sequence) (cDNA clone:J023019L08, full insert sequence),OTU-like cysteine protease-like (Os02g0819500 protein) (cDNA clone:001-205-H07, full insert sequence),Os02g0819500 protein (Fragment) Q6K722,Q6K721,A0A0P0VR94 Q6K722_ORYSJ,Q6K721_ORYSJ,A0A0P0VR94_ORYSJ P0474F11.2-1 OJ1202_E07.21-1 Os02g0819500 OSNPB_020819500,P0474F11.2-2 OJ1202_E07.21-2 Os02g0819500 OSNPB_020819500,Os02g0819500 OSNPB_020819500 ENOG411EKMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411EKMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease Os04g0402300 protein B9FEZ7 B9FEZ7_ORYSJ Os04g0402300 OsJ_14667 OSNPB_040402300 ENOG411EKMA OTU11 F4J076,Q0V869 F4J076_ARATH,Q0V869_ARATH Cysteine proteinases superfamily protein (OTU-containing deubiquitinating enzyme OTU11 isoform ii),At3g22260 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme OTU11 isoform i) 27734,28228 Cysteine proteinases superfamily protein (OTU-containing deubiquitinating enzyme OTU11 isoform ii),At3g22260 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme OTU11 isoform i) plasma membrane [GO:0005886] locus:2091633; AT3G22260 OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411EKMN TSBtype2 Q9FFW8 Q9FFW8_ARATH Tryptophan synthase beta chain (Tryptophan synthase beta type 2) ARA:AT5G38530-MONOMER;MetaCyc:AT5G38530-MONOMER; 4.2.1.20; 55742 Tryptophan synthase beta chain (Tryptophan synthase beta type 2) L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity [GO:0052684]; protein homodimerization activity [GO:0042803]; pyridoxal phosphate binding [GO:0030170]; tryptophan synthase activity [GO:0004834]; tryptophan biosynthetic process [GO:0000162] locus:2159838; AT5G38530 tryptophan synthase beta chain Os06g0632200 protein (Putative Tryptophan synthase beta chain),Os06g0632200 protein (Putative Tryptophan synthase beta chain) (cDNA clone:001-016-B09, full insert sequence) Q67VM2,Q67VM1 Q67VM2_ORYSJ,Q67VM1_ORYSJ P0505A04.10-1 Os06g0632200 OSNPB_060632200,P0505A04.10-2 Os06g0632200 OSNPB_060632200 ENOG411EKMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tify domain NA NA NA NA NA NA NA ENOG411EKMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Golgi-body localisation protein domain Os03g0681201 protein (Fragment) A0A0P0W291 A0A0P0W291_ORYSJ Os03g0681201 OSNPB_030681201 ENOG411EKMJ Q93ZN5 Q93ZN5_ARATH AT4g00090/F6N15_8 (Transducin/WD40 repeat-like superfamily protein) 46551 AT4g00090/F6N15_8 (Transducin/WD40 repeat-like superfamily protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2126926; AT4G00090 WD domain G-beta repeat Os03g0858400 protein (Putative WD repeat protein) (WD domains, G-beta repeats containing protein, putative, expressed) (cDNA clone:J033115J18, full insert sequence) Q84M69 Q84M69_ORYSJ LOC_Os03g64110 Os03g0858400 OsJ_13442 OSJNBa0059G06.8 OSNPB_030858400 ENOG411EKMI SMG7L Q9FZ99,F4KDR7 SMG7L_ARATH,F4KDR7_ARATH Protein SMG7L (Protetin SMG7-like),Uncharacterized protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18544632}. FUNCTION: May play a role in growth and development. {ECO:0000305}. R-ATH-975957; 99784,25508 Protein SMG7L (Protetin SMG7-like),Uncharacterized protein cytoplasm [GO:0005737]; telomerase holoenzyme complex [GO:0005697]; ribonuclease activity [GO:0004540]; ribonucleoprotein complex binding [GO:0043021]; telomerase RNA binding [GO:0070034]; telomeric DNA binding [GO:0042162]; mRNA export from nucleus [GO:0006406]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; regulation of RNA stability [GO:0043487]; telomere maintenance via telomerase [GO:0007004] locus:2032205;,locus:2181813; AT1G28260,AT5G02650 Telomerase activating protein Est1 NA NA NA NA NA NA NA ENOG411EKMW A0A1P8B3W1,B3H4G1 A0A1P8B3W1_ARATH,B3H4G1_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein 21976,23453 Calcium-dependent lipid-binding (CaLB domain) family protein locus:4515103319; AT4G00467 C2 domain NA NA NA NA NA NA NA ENOG411EKMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EKMU T22E16.130 Q9M2T2,A8MRW6 Q9M2T2_ARATH,A8MRW6_ARATH At3g55470 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Elicitor responsive/phloem-like protein) (Putative elicitor responsive/phloem),Calcium-dependent lipid-binding (CaLB domain) family protein 17317,17187 At3g55470 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Elicitor responsive/phloem-like protein) (Putative elicitor responsive/phloem),Calcium-dependent lipid-binding (CaLB domain) family protein locus:2099946; AT3G55470 domain-containing protein NA NA NA NA NA NA NA ENOG411EKMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EKMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tetratricopeptide repeat protein 27 homolog NA NA NA NA NA NA NA ENOG411EKMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain OSJNBa0032F06.15 protein (Os04g0682100 protein) (cDNA clone:J023060G05, full insert sequence) Q7XPW6 Q7XPW6_ORYSJ Os04g0682100 Os04g0682100 OsJ_16664 OSJNBa0032F06.15 OSNPB_040682100 ENOG411EKMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA elicitor-responsive protein NA NA NA NA NA NA NA ENOG411EKMX CAR11 Q9FIK8 CAR11_ARATH Protein C2-DOMAIN ABA-RELATED 11 [Cleaved into: Protein C2-DOMAIN ABA-RELATED 11, N-terminally processed] FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). {ECO:0000250|UniProtKB:Q9FHP6, ECO:0000250|UniProtKB:Q9LVH4}. 18335 Protein C2-DOMAIN ABA-RELATED 11 [Cleaved into: Protein C2-DOMAIN ABA-RELATED 11, N-terminally processed] nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547] locus:2160867; AT5G47710 ADP-ribosylation factor GTPase-activating protein NA NA NA NA NA NA NA ENOG411EKM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLASP N terminal NA NA NA NA NA NA NA ENOG411EKM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLASP N terminal Os08g0534200 protein A0A0P0XIA0,A0A0P0XIE4 A0A0P0XIA0_ORYSJ,A0A0P0XIE4_ORYSJ Os08g0534200 OSNPB_080534200 ENOG411EKM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLASP N terminal NA NA NA NA NA NA NA ENOG411EKM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sm NA NA NA NA NA NA NA ENOG411EKM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease OTU-like cysteine protease family protein, putative, expressed (Os03g0859800 protein) (cDNA clone:J013087H17, full insert sequence),Os03g0859800 protein (Fragment) Q10AA4,A0A0P0W630 Q10AA4_ORYSJ,A0A0P0W630_ORYSJ LOC_Os03g64219 Os03g0859800 OsJ_13452 OSNPB_030859800,Os03g0859800 OSNPB_030859800 ENOG411EKM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411E151 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os03g0814500 protein,Os03g0841600 protein (Fragment),Os10g0327200 protein,Os10g0162980 protein Q65X84,Q75HF6,Q0DLX2,Q65X83,A0A0P0XSR4,A0A0P0XRZ0 Q65X84_ORYSJ,Q75HF6_ORYSJ,Q0DLX2_ORYSJ,Q65X83_ORYSJ,A0A0P0XSR4_ORYSJ,A0A0P0XRZ0_ORYSJ Os05g0527000 Os05g0527000 OJ1187_E11.4 OJ1593_C11.18 OSNPB_050527000,Os03g0814500 LOC_Os03g59990 OsJ_13090 OSJNBa0024F18.12 OSNPB_030814500,Os03g0841600 OSNPB_030841600,Os05g0527100 OJ1187_E11.5 OJ1593_C11.19 OsJ_19279 OSNPB_050527100,Os10g0327200 OSNPB_100327200,Os10g0162980 OSNPB_100162980 ENOG411E150 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411E153 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q69MI0 Q69MI0_ORYSJ Os09g0433000 OJ1081_G10.4 OsJ_29470 OSJNBa0039E17.37 OSNPB_090433000 ENOG411E155 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Aspartic proteinase Asp1 (OSAP1) (OsAsp1) (EC 3.4.23.-) (Nucellin-like protein),Eukaryotic aspartyl protease family protein, expressed (Nucellin-like aspartic protease) (Os11g0183900 protein),Os11g0183900 protein (Fragment) Q0IU52,Q53NE7,A0A0P0Y0G8 ASP1_ORYSJ,Q53NE7_ORYSJ,A0A0P0Y0G8_ORYSJ ASP1 Os11g0184800 LOC_Os11g08200 OsJ_031884,Os11g0183900 LOC_Os11g08100 Os11g0183900 OsJ_33210 OSNPB_110183900,Os11g0183900 OSNPB_110183900 ENOG411E157 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain Os05g0392200 protein (Fragment) A0A0N7KKQ3 A0A0N7KKQ3_ORYSJ Os05g0392200 OSNPB_050392200 ENOG411E156 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os01g0149500 protein (Fragment),Os01g0149350 protein,Os08g0332600 protein Q0JQN9,A2ZP97,A0A0P0XEK0 Q0JQN9_ORYSJ,A2ZP97_ORYSJ,A0A0P0XEK0_ORYSJ Os01g0149500 Os01g0149500 OSNPB_010149500,Os01g0149350 OsJ_00378 OSNPB_010149350,Os08g0332600 OSNPB_080332600 ENOG411E159 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Arabinogalactan protein-like (Os01g0668100 protein) (cDNA clone:001-200-A09, full insert sequence) Q5QLS1 Q5QLS1_ORYSJ Os01g0668100 Os01g0668100 OSJNBb0063G05.35 OSNPB_010668100 P0014E08.5 ENOG411E158 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAS fold Adagio-like protein 1,Putative adagio-like protein 2,Os02g0150800 protein (cDNA, clone: J090091D10, full insert sequence) Q5Z8K3,Q67UX0,B7F9U6 ADO1_ORYSJ,ADO2_ORYSJ,B7F9U6_ORYSJ Os06g0694000 LOC_Os06g47890 OsJ_22473 P0550B04.22,Os02g0150800 LOC_Os02g05700 OSJNBa0050G13.16,Os02g0150800 OSNPB_020150800 FUNCTION: Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex (By similarity). {ECO:0000250}. ENOG411E15B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive Os10g0537600 protein (Fragment) Q0IW26 Q0IW26_ORYSJ Os10g0537600 Os10g0537600 OSNPB_100537600 ENOG411E15E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os10g0488900 protein (Fragment) Q0IWT7 Q0IWT7_ORYSJ Os10g0488900 OSNPB_100488900 ENOG411E15D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Snf7 Os01g0102950 protein (Os01g0103000 protein) (Putative CGI-34 protein) (cDNA clone:002-141-D09, full insert sequence) (p0455C04.24 protein),Os05g0102900 protein (cDNA clone:001-039-B05, full insert sequence) (cDNA clone:006-201-H05, full insert sequence) (cDNA clone:J013042C01, full insert sequence) Q9FTZ4,Q9FW24 Q9FTZ4_ORYSJ,Q9FW24_ORYSJ P0455C04.24 Os01g0103000 Os01g0102950 OsJ_00024 OSNPB_010103000 P0436E04.3 P0672D08.51,Os05g0102900 OsJ_16786 OSNPB_050102900 P0036D10.19 P0668H12.4 ENOG411E15G Q6ICZ8,Q9LHG9 NACA3_ARATH,NACA1_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3),Nascent polypeptide-associated complex subunit alpha-like protein 1 (NAC-alpha-like protein 1) (Alpha-NAC-like protein 1) FUNCTION: May promote appropriate targeting of ribosome-nascent polypeptide complexes. {ECO:0000250}. 22057,21982 Nascent polypeptide-associated complex subunit alpha-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3),Nascent polypeptide-associated complex subunit alpha-like protein 1 (NAC-alpha-like protein 1) (Alpha-NAC-like protein 1) cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; nascent polypeptide-associated complex [GO:0005854]; plasmodesma [GO:0009506]; protein transport [GO:0015031]; response to salt stress [GO:0009651],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nascent polypeptide-associated complex [GO:0005854]; plasmodesma [GO:0009506]; protein transport [GO:0015031]; response to salt stress [GO:0009651] locus:2159093;,locus:2092462; AT5G13850,AT3G12390 nascent polypeptide-associated complex subunit alpha-like NAC transcription factor (Os01g0938900 protein) (Putative nascent polypeptide associated complex alpha chain) (cDNA clone:006-202-F04, full insert sequence),Nascent polypeptide associated complex alpha chain (Os05g0373700 protein) (Putative nascent polypeptide associated complex alpha chain) (cDNA clone:001-008-D09, full insert sequence) Q8RUI4,Q7XXR8 Q8RUI4_ORYSJ,Q7XXR8_ORYSJ Os01g0938900 Os01g0938900 B1150F11.9 OsJ_04709 OSNPB_010938900 P0504E02.33,Os05g0373700 Os05g0373700 OsJ_18316 OSJNBa0025P09.16 OSNPB_050373700 ENOG411E15F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-dependent decarboxylase conserved domain Glutamate decarboxylase (EC 4.1.1.15) Q7XV18 Q7XV18_ORYSJ Os04g0447800 Os04g0447800 OSJNBa0064H22.6 OSNPB_040447800 ENOG411E15H JKD Q700D2 IDD10_ARATH Zinc finger protein JACKDAW (ID1-like zinc finger protein 3) (Protein indeterminate-domain 10) jkd-4 mutants have slightly shorter roots than wild type seedlings and about 15% of them show premature lateral root initiation. They have fewer root meristem cells than wild type seedlings at 5 and 12 days post-germination. But there is a higher number of cells in the endodermal and cortical layers of the root in jkd-4 mutants than in WT seedlings. A loss of expression of SCR in the QC can be detected in jkd-4 mutants at the early heart stage and torpedo stages of embryonic development. A GFP:SHR fusion protein normally confined to the nuclei of QC cells is present in the cytoplasm most QC cells in jkd-4 mutants. However GFP:SHR is observed in the nuclei of ground tissue cells in jkd-4 mutants.,There is strong GUS staining in the ground tissue and quiescent center cells resulting from expression from the promoterless beta-glucuronidase reporter gene in the jkd-1 mutant. These mutants have ectopic periclinal divisions in the ground tissue.,jkd-2 mutants have slightly shorter roots than wild type seedlings and about 15% of them show premature lateral root initiation. They have fewer root meristem cells than wild type seedlings at 5 and 12 days post-germination. Slightly shorter roots; Early lateral root formation-B. Scheres-2007 FUNCTION: Transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action(PubMed:17785527). Required for radial patterning and stem cell maintenance(PubMed:17785527). Counteracted by 'MAGPIE' (MGP)(PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722}. MISCELLANEOUS: Early initiation of expression in ground tissue is SHR- and SCR-independent but later maintenance becomes dependent on both. 55201 Zinc finger protein JACKDAW (ID1-like zinc finger protein 3) (Protein indeterminate-domain 10) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; asymmetric cell division [GO:0008356]; regulation of cell division [GO:0051302]; regulation of epidermal cell differentiation [GO:0045604]; regulation of meristem growth [GO:0010075]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Start to accumulate during the 16- to 32-cell stage of embryogenesis. {ECO:0000269|PubMed:17785527}. TISSUE SPECIFICITY: Expressed in the quiescent center, the ground tissue stem cells and to a lesser extent in mature cortex and endodermis cells. {ECO:0000269|PubMed:17785527}. locus:2143543; AT5G03150 zinc finger protein NA NA NA NA NA NA NA ENOG411E15K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0376200 protein,Os04g0376800 protein A0A0P0W971,A0A0P0W9N1 A0A0P0W971_ORYSJ,A0A0P0W9N1_ORYSJ Os04g0376200 OSNPB_040376200,Os04g0376800 OSNPB_040376800 ENOG411E15J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxisomal membrane anchor protein (Pex14p) conserved region Os05g0578000 protein (cDNA clone:J013001H17, full insert sequence) Q6L5F0 Q6L5F0_ORYSJ Os05g0578000 Os05g0578000 OJ1126_B10.12 OsJ_19659 OSNPB_050578000 ENOG411E15N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E15Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development Squamosa promoter-binding-like protein 12,Os06g0703500 protein (Fragment) Q5Z818,A0A0P0X0K9 SPL12_ORYSJ,A0A0P0X0K9_ORYSJ SPL12 Os06g0703500 LOC_Os06g49010 OJ1215_E11.11 OsJ_22552,Os06g0703500 OSNPB_060703500 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411E15S CNGC13,CNGC10 Q9LD40,Q9LNJ0 CNG13_ARATH,CNG10_ARATH Putative cyclic nucleotide-gated ion channel 13 (Cyclic nucleotide- and calmodulin-regulated ion channel 13),Probable cyclic nucleotide-gated ion channel 10 (CaM-regulated potassium ion channel) (Cyclic nucleotide- and calmodulin-regulated ion channel 10) FUNCTION: Putative cyclic nucleotide-gated ion channel.,FUNCTION: Probable cyclic nucleotide-gated ion channel. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 80474,81895 Putative cyclic nucleotide-gated ion channel 13 (Cyclic nucleotide- and calmodulin-regulated ion channel 13),Probable cyclic nucleotide-gated ion channel 10 (CaM-regulated potassium ion channel) (Cyclic nucleotide- and calmodulin-regulated ion channel 10) integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391] locus:2125206;,locus:2035347; AT4G01010,AT1G01340 ion channel NA NA NA NA NA NA NA ENOG411E15R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF303) NA NA NA NA NA NA NA ENOG411E15U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP domain DRE binding factor (AP2-domain DRE binding factor DBF1) (Os08g0408500 protein) (cDNA clone:001-201-G08, full insert sequence) (cDNA clone:J013151K12, full insert sequence),Os09g0369050 protein (Fragment) Q6Z9V4,A0A0P0XMM7 Q6Z9V4_ORYSJ,A0A0P0XMM7_ORYSJ Os08g0408500 Os08g0408500 OsJ_27264 OSNPB_080408500 P0042B03.7 P0453D01.40,Os09g0369050 OSNPB_090369050 ENOG411E15T ATG101,MUD21.19 F4K265,F4K264 AT101_ARATH,F4K264_ARATH Autophagy-related protein 101,Meiotically up-regulated protein FUNCTION: Accessory protein involved in autophagy. Acts as scaffold protein of the ATG1-ATG13 complex for faithful delivery of autophagic vesicles to the vacuole. Required for selective mitophagy. {ECO:0000250|UniProtKB:Q9SUG7}. 25278,29298 Autophagy-related protein 101,Meiotically up-regulated protein autophagosome [GO:0005776]; cytoplasmic vesicle [GO:0031410]; autophagy [GO:0006914]; protein transport [GO:0015031],pre-autophagosomal structure [GO:0000407]; autophagosome assembly [GO:0000045] locus:2174964; AT5G66930 Protein of unknown function (DUF1649) Os12g0446700 protein,Os12g0428200 protein Q0INI1,A0A0P0Y9L9 Q0INI1_ORYSJ,A0A0P0Y9L9_ORYSJ Os12g0446700 Os12g0446700 OSNPB_120446700,Os12g0428200 OSNPB_120428200 ENOG411E15W UKL4,UKL3 O65583,Q8VYB2,A0A1P8AWM1,A0A1P8AWK0 UKL4_ARATH,UKL3_ARATH,A0A1P8AWM1_ARATH,A0A1P8AWK0_ARATH Uridine kinase-like protein 4 [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase-like protein 3 [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase (EC 2.7.1.48) DISRUPTION PHENOTYPE: No visible phenotype. No decrease in uracil phosphoribosyltransferase activity. {ECO:0000269|PubMed:19563437}. FUNCTION: Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure. {ECO:0000269|PubMed:19563437}. PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.; PATHWAY: Pyrimidine metabolism; CTP biosynthesis via salvage pathway; CTP from cytidine: step 1/3.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1.,PATHWAY: Pyrimidine metabolism; CTP biosynthesis via salvage pathway; CTP from cytidine: step 1/3. {ECO:0000256|RuleBase:RU003825}.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1. {ECO:0000256|RuleBase:RU003825}. ARA:AT4G26510-MONOMER;,ARA:AT1G55810-MONOMER; R-ATH-73614; 2.7.1.48; 2.4.2.9,2.7.1.48 52639,52443,54813,50765 Uridine kinase-like protein 4 [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase-like protein 3 [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase (EC 2.7.1.48) cytosol [GO:0005829]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845]; uridine kinase activity [GO:0004849]; CTP salvage [GO:0044211]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097]; UMP salvage [GO:0044206],ATP binding [GO:0005524]; uridine kinase activity [GO:0004849]; CTP salvage [GO:0044211]; UMP salvage [GO:0044206] locus:2131498;,locus:2012125; AT4G26510,AT1G55810 uridine kinase Uridine kinase (EC 2.7.1.48) Q53LT4,Q6K7V0 Q53LT4_ORYSJ,Q6K7V0_ORYSJ LOC_Os11g16370 Os11g0265000 OSNPB_110265000,Os02g0273000 OsJ_06214 OSNPB_020273000 P0413A11.1 P0521F09.28 ENOG411E15V CFIS1 Q94AF0 CFIS1_ARATH Pre-mRNA cleavage factor Im 25 kDa subunit 1 (Cleavage and polyadenylation specificity factor 25 kDa subunit) (AtCFI-25) (CFIm-25) (CPSF 25 kDa subunit) (Cleavage and polyadenylation specificity factor subunit 25) FUNCTION: Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. Involved in association with CPSF6 or CPSF7 in pre-MRNA 3'-end poly(A) site cleavage and poly(A) addition. NUDT21/CPSF5 binds to cleavage and polyadenylation RNA substrates. The homodimer mediates simultaneous sequence-specific recognition of two 5'-UGUA-3' elements within the pre-mRNA. Binds to, but does not hydrolyze mono- and di-adenosine nucleotides. May have a role in mRNA export. {ECO:0000250|UniProtKB:O43809}. R-ATH-72163; 25561 Pre-mRNA cleavage factor Im 25 kDa subunit 1 (Cleavage and polyadenylation specificity factor 25 kDa subunit) (AtCFI-25) (CFIm-25) (CPSF 25 kDa subunit) (Cleavage and polyadenylation specificity factor subunit 25) mRNA cleavage factor complex [GO:0005849]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; mRNA polyadenylation [GO:0006378] locus:2123919; AT4G29820 cleavage and polyadenylation specificity factor subunit Os08g0398800 protein (Putative cleavage and polyadenylation specific factor) (cDNA clone:006-212-B12, full insert sequence) (cDNA clone:J023110C11, full insert sequence) Q6ZIV4 Q6ZIV4_ORYSJ Os08g0398800 OJ1051_A08.9 OJ1198_B10.21 OsJ_27211 OSNPB_080398800 ENOG411E15Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein of CLR family NA NA NA NA NA NA NA ENOG411E15X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain Tubulin beta-8 chain (Beta-8-tubulin) Q76FS2 TBB8_ORYSJ TUBB8 TUB8 Os03g0661300 LOC_Os03g45920 OSJNBa0034D21.30 OSJNBb0065L20.6 FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. ENOG411EB5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0164500 protein A0A0P0WIL8 A0A0P0WIL8_ORYSJ Os05g0164500 OSNPB_050164500 ENOG411EB5X AT7,AT4 Q9LNL1,Q9FJ78,Q4PT07,Q9FJ75,Q3ED15,Q9FGN1 WAXS8_ARATH,WAXS7_ARATH,WAXS9_ARATH,WAXS4_ARATH,WAXSA_ARATH,WAXSB_ARATH Probable long-chain-alcohol O-fatty-acyltransferase 8 (EC 2.3.1.75) (Wax synthase 8),Probable long-chain-alcohol O-fatty-acyltransferase 7 (EC 2.3.1.75) (Wax synthase 7),Probable long-chain-alcohol O-fatty-acyltransferase 9 (EC 2.3.1.75) (Wax synthase 9),Probable long-chain-alcohol O-fatty-acyltransferase 4 (EC 2.3.1.75) (Wax synthase 4),Putative long-chain-alcohol O-fatty-acyltransferase 10 (EC 2.3.1.75) (Wax synthase 10),Probable long-chain-alcohol O-fatty-acyltransferase 11 (EC 2.3.1.75) (Wax synthase 11) FUNCTION: Catalyzes the final step in the synthesis of long-chain linear esters (waxes). {ECO:0000250}. ARA:AT1G34520-MONOMER;,ARA:AT5G55320-MONOMER;,ARA:AT1G34500-MONOMER;,ARA:AT5G55350-MONOMER;,ARA:AT1G34490-MONOMER;,ARA:AT5G51420-MONOMER; 2.3.1.75; 2.3.1.75 38954,38978,39349,39825,39009,51287 Probable long-chain-alcohol O-fatty-acyltransferase 8 (EC 2.3.1.75) (Wax synthase 8),Probable long-chain-alcohol O-fatty-acyltransferase 7 (EC 2.3.1.75) (Wax synthase 7),Probable long-chain-alcohol O-fatty-acyltransferase 9 (EC 2.3.1.75) (Wax synthase 9),Probable long-chain-alcohol O-fatty-acyltransferase 4 (EC 2.3.1.75) (Wax synthase 4),Putative long-chain-alcohol O-fatty-acyltransferase 10 (EC 2.3.1.75) (Wax synthase 10),Probable long-chain-alcohol O-fatty-acyltransferase 11 (EC 2.3.1.75) (Wax synthase 11) integral component of membrane [GO:0016021]; arachidoyl-CoA:1-dodecanol O-acyltransferase activity [GO:0102966]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; wax ester synthase activity [GO:0103095]; lipid metabolic process [GO:0006629] locus:2009303;,locus:2173872;,locus:2009328;,locus:2173917;,locus:2009338;,locus:2163650; AT1G34520,AT5G55320,AT1G34500,AT5G55350,AT1G34490,AT5G51420 NA NA NA NA NA NA NA NA ENOG411EB5R XTH21 Q9ZV40 XTH21_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 21 (At-XTH21) (XTH-21) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. ARA:AT2G18800-MONOMER; 2.4.1.207; 2.4.1.207 34145 Probable xyloglucan endotransglucosylase/hydrolase protein 21 (At-XTH21) (XTH-21) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall modification [GO:0042545]; primary root development [GO:0080022]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Predominantly expressed in green siliques. {ECO:0000269|PubMed:11673616}. locus:2053967; AT2G18800 Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411EB5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ShKT NA NA NA NA NA NA NA ENOG411EB5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EB5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1719) Os07g0120800 protein (cDNA clone:J033124C09, full insert sequence),Os07g0285800 protein Q0D8X7,Q7EZ47 Q0D8X7_ORYSJ,Q7EZ47_ORYSJ Os07g0120800 Os07g0120800 OSNPB_070120800,Os07g0285800 OsJ_23862 OSJNBb0091I19.124 OSNPB_070285800 ENOG411EB5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EB5T Q9C6X0,Q9FFX1,Q9FFM6,Q9FFX2 Y1203_ARATH,Y5850_ARATH,Y5578_ARATH,Y5849_ARATH B3 domain-containing protein At1g32030,B3 domain-containing protein At5g38500,Putative B3 domain-containing protein At5g35780,B3 domain-containing protein At5g38490 37697,47393,35168,41728 B3 domain-containing protein At1g32030,B3 domain-containing protein At5g38500,Putative B3 domain-containing protein At5g35780,B3 domain-containing protein At5g38490 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2195381;,locus:2159903;,locus:2159898; AT1G32030,AT5G38500,AT5G35780,AT5G38490 Domain of unknown function (DUF313) NA NA NA NA NA NA NA ENOG411EB5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB5K MDJ22.12 Q9FNJ4,Q9FNJ5,Q9FNJ1,A0A1P8BHE0,A0A1P8BHD3 FDL32_ARATH,FDL31_ARATH,FDL47_ARATH,A0A1P8BHE0_ARATH,A0A1P8BHD3_ARATH Putative F-box/FBD/LRR-repeat protein At5g22670,F-box/FBD/LRR-repeat protein At5g22660,F-box/FBD/LRR-repeat protein At5g22700,LOW protein: F-box/FBD/LRR-like protein 50902,51626,50371,54723,50230 Putative F-box/FBD/LRR-repeat protein At5g22670,F-box/FBD/LRR-repeat protein At5g22660,F-box/FBD/LRR-repeat protein At5g22700,LOW protein: F-box/FBD/LRR-like protein locus:2162499;,locus:2162489;,locus:2162454; AT5G22670,AT5G22660,AT5G22700 FBD NA NA NA NA NA NA NA ENOG411EB5H EXPA14 Q9FMA0,A0A1P8BHD2 EXP14_ARATH,A0A1P8BHD2_ARATH Expansin-A14 (AtEXPA14) (Alpha-expansin-14) (At-EXP14) (AtEx14) (Ath-ExpAlpha-1.5),Expansin A14 FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). Target of the transcriptional activator LBD18. Regulated by LBD18 to promote lateral root formation (PubMed:22974309). {ECO:0000250|UniProtKB:Q9LDR9, ECO:0000269|PubMed:22974309}. 27733,32724 Expansin-A14 (AtEXPA14) (Alpha-expansin-14) (At-EXP14) (AtEx14) (Ath-ExpAlpha-1.5),Expansin A14 cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; lateral root formation [GO:0010311]; plant-type cell wall loosening [GO:0009828],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] DEVELOPMENTAL STAGE: Expressed during lateral root development. {ECO:0000269|PubMed:23872272}. locus:2161028; AT5G56320 Pollen allergen NA NA NA NA NA NA NA ENOG411EB5I ATL34 Q9C7I1 ATL34_ARATH RING-H2 finger protein ATL34 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL34) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 36502 RING-H2 finger protein ATL34 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL34) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2206722; AT1G35330 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EB5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EB5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family Os05g0469825 protein A0A0P0WNF3 A0A0P0WNF3_ORYSJ Os05g0469825 OSNPB_050469825 ENOG411EB5B CAX4 Q945S5 CAX4_ARATH Vacuolar cation/proton exchanger 4 (AtCAX4) (Ca(2+)/H(+) antiporter CAX4) (Ca(2+)/H(+) exchanger 4) (Protein CATION EXCHANGER 4) Abnormal root growth in response to cadmium, manganese and auxin-K. Hirschi-2009 FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase. Cation selectivity transport in tobacco root tonoplast vesicles is Cd(2+)>Zn(2+)>>Ca(2+)>>>Mn(2+). {ECO:0000269|PubMed:16845524}. 48699 Vacuolar cation/proton exchanger 4 (AtCAX4) (Ca(2+)/H(+) antiporter CAX4) (Ca(2+)/H(+) exchanger 4) (Protein CATION EXCHANGER 4) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; calcium:cation antiporter activity [GO:0015368]; calcium:proton antiporter activity [GO:0015369]; response to auxin [GO:0009733]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed at low levels in all tissues. {ECO:0000269|PubMed:11950973}. locus:2149720; AT5G01490 Sodium/calcium exchanger protein NA NA NA NA NA NA NA ENOG411EB5C MRSA2 Q9LY15 MSRA2_ARATH Peptide methionine sulfoxide reductase A2 (AtMSRA2) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) DISRUPTION PHENOTYPE: In short day conditions, reduced growth and increased oxidative stress late in the dark period. {ECO:0000269|PubMed:15031406}. Increased protein oxidation nitration and glycation of specific amino acid residues during darkness,Reduced growth in short-day conditions. Higher levels of oxidative stress FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. Prevents cellular oxidative damage in long nights. MSRA family specifically reduces the MetSO S-enantiomer. {ECO:0000269|PubMed:15031406}. 1.8.4.11 24434 Peptide methionine sulfoxide reductase A2 (AtMSRA2) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) cytosol [GO:0005829]; L-methionine:thioredoxin-disulfide S-oxidoreductase activity [GO:0033744]; peptide-methionine (S)-S-oxide reductase activity [GO:0008113]; cellular protein modification process [GO:0006464]; cellular response to oxidative stress [GO:0034599]; response to karrikin [GO:0080167]; response to oxidative stress [GO:0006979] locus:2183409; AT5G07460 sulfoxide reductase NA NA NA NA NA NA NA ENOG411EB5A LECRK54,LecRK-V.4 O22833,A0A1P8B034 LRK54_ARATH,A0A1P8B034_ARATH L-type lectin-domain containing receptor kinase V.4 (Arabidopsis thaliana lectin-receptor kinase c1) (AthlecRK-c1) (LecRK-V.4) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici and to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}. 2.7.11.1 73906,71225 L-type lectin-domain containing receptor kinase V.4 (Arabidopsis thaliana lectin-receptor kinase c1) (AthlecRK-c1) (LecRK-V.4) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] locus:2043909; AT2G43700 Legume lectin domain NA NA NA NA NA NA NA ENOG411EB5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0628700 protein Q0D4F7 Q0D4F7_ORYSJ Os07g0628700 Os07g0628700 OSNPB_070628700 ENOG411EB5G BGLU1,BGLU3,BGLU6,BGLU7,BGLU8,BGLU4,BGLU5,BGLU2 Q3ECW8,O65458,Q682B4,Q9LZJ1,Q67XN2,Q9ZUI3,Q8RXN9,Q9FMD8,A0A1I9LTV8,A0A1I9LTV2,A0A1P8AVJ5,A0A1P8AWA5,A0A1P8AWB3,A0A1P8AW88,A0A1I9LTV7,A0A1I9LTV6,A0A1I9LTV4,A0A1I9LRH0,A0A1P8ATT2 BGL01_ARATH,BGL03_ARATH,BGL06_ARATH,BGL07_ARATH,BGL08_ARATH,BGL04_ARATH,BGL05_ARATH,BGL02_ARATH,A0A1I9LTV8_ARATH,A0A1I9LTV2_ARATH,A0A1P8AVJ5_ARATH,A0A1P8AWA5_ARATH,A0A1P8AWB3_ARATH,A0A1P8AW88_ARATH,A0A1I9LTV7_ARATH,A0A1I9LTV6_ARATH,A0A1I9LTV4_ARATH,A0A1I9LRH0_ARATH,A0A1P8ATT2_ARATH Beta-glucosidase 1 (AtBGLU1) (EC 3.2.1.21),Beta-glucosidase 3 (AtBGLU3) (EC 3.2.1.21),Putative beta-glucosidase 6 (AtBGLU6) (EC 3.2.1.21),Beta-glucosidase 7 (AtBGLU7) (EC 3.2.1.21),Beta-glucosidase 8 (AtBGLU8) (EC 3.2.1.21),Beta-glucosidase 4 (AtBGLU4) (EC 3.2.1.21),Putative beta-glucosidase 5 (AtBGLU5) (EC 3.2.1.21),Putative beta-glucosidase 2 (AtBGLU2) (EC 3.2.1.21),Beta glucosidase 8,Beta glucosidase 6,Glycosyl hydrolase superfamily protein,Beta glucosidase 7,Beta glucosidase 4 ARA:AT1G45191-MONOMER;,ARA:AT4G22100-MONOMER;,ARA:AT1G60270-MONOMER;,ARA:AT3G62740-MONOMER;,ARA:AT3G62750-MONOMER;,ARA:AT1G60090-MONOMER;,ARA:AT1G60260-MONOMER;,ARA:AT5G16580-MONOMER; R-ATH-189085; 3.2.1.21 58585,57307,42587,56418,56178,57971,56645,33646,41725,46683,32805,46501,47015,57196,49886,59152,52292,47596,57038 Beta-glucosidase 1 (AtBGLU1) (EC 3.2.1.21),Beta-glucosidase 3 (AtBGLU3) (EC 3.2.1.21),Putative beta-glucosidase 6 (AtBGLU6) (EC 3.2.1.21),Beta-glucosidase 7 (AtBGLU7) (EC 3.2.1.21),Beta-glucosidase 8 (AtBGLU8) (EC 3.2.1.21),Beta-glucosidase 4 (AtBGLU4) (EC 3.2.1.21),Putative beta-glucosidase 5 (AtBGLU5) (EC 3.2.1.21),Putative beta-glucosidase 2 (AtBGLU2) (EC 3.2.1.21),Beta glucosidase 8,Beta glucosidase 6,Glycosyl hydrolase superfamily protein,Beta glucosidase 7,Beta glucosidase 4 beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],vacuole [GO:0005773]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657]; response to karrikin [GO:0080167],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:1005716680;,locus:2120653;,locus:2195653;,locus:2081665;,locus:2081680;,locus:2202710;,locus:2174180; AT1G45191,AT4G22100,AT1G60270,AT3G62740,AT3G62750,AT1G60090,AT1G60260,AT5G16580 Beta glucosidase NA NA NA NA NA NA NA ENOG411EB5D O82283,A0A1P8AYE6 O82283_ARATH,A0A1P8AYE6_ARATH Putative serpin (Serine protease inhibitor (SERPIN) family protein),Serpin 41507,13296 Putative serpin (Serine protease inhibitor (SERPIN) family protein),Serpin extracellular space [GO:0005615]; peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867] locus:2062400; AT2G35580 SERPIN NA NA NA NA NA NA NA ENOG411EB5E Q3E8Y5,Q1PE09,P0C2F9,Q3E8Y7,Q3E9N2 FK115_ARATH,FK104_ARATH,FK105_ARATH,FK114_ARATH,Y4397_ARATH Putative F-box/kelch-repeat protein At5g28180,F-box/kelch-repeat protein At4g39753,Putative F-box/kelch-repeat protein At4g39756,Putative F-box/kelch-repeat protein At5g28160,Uncharacterized protein At4g39750 40264,44958,43220,37099,16939 Putative F-box/kelch-repeat protein At5g28180,F-box/kelch-repeat protein At4g39753,Putative F-box/kelch-repeat protein At4g39756,Putative F-box/kelch-repeat protein At5g28160,Uncharacterized protein At4g39750 locus:2182054;,locus:505006571;,locus:505006572;,locus:2182034;,locus:2135247; AT5G28180,AT4G39753,AT4G39756,AT5G28160,AT4G39750 Kelch motif NA NA NA NA NA NA NA ENOG411EB58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromo (CHRromatin Organisation MOdifier) domain NA NA NA NA NA NA NA ENOG411EB59 CYP72A11,CYP72A15,CYP72A14,CYP72A13,CYP72A7,CYP72A10 Q9LUC9,Q9LUC5,Q9LUC6,Q9LUC8,Q9LUD3,F4IW83,A0A1I9LP41,A0A1I9LNT1,A0A1I9LP42,A0A1I9LLM3 C7A11_ARATH,C7A15_ARATH,C7A14_ARATH,C7A13_ARATH,Q9LUD3_ARATH,F4IW83_ARATH,A0A1I9LP41_ARATH,A0A1I9LNT1_ARATH,A0A1I9LP42_ARATH,A0A1I9LLM3_ARATH Cytochrome P450 72A11 (EC 1.14.-.-),Cytochrome P450 72A15 (EC 1.14.-.-),Cytochrome P450 72A14 (EC 1.14.-.-),Cytochrome P450 72A13 (EC 1.14.-.-),Cytochrome P450 (Cytochrome P450, family 72, subfamily A, polypeptide 7),Cytochrome P450, family 72, subfamily A, polypeptide 10,Cytochrome P450, family 72, subfamily A, polypeptide 13,Cytochrome P450, family 72, subfamily A, polypeptide 15 ARA:AT3G14650-MONOMER;,ARA:AT3G14690-MONOMER;,ARA:AT3G14680-MONOMER;,ARA:AT3G14660-MONOMER;,ARA:AT3G14610-MONOMER; 1.14.-.- 58138,58442,58507,58459,58302,58523,44807,61191,41576,62303 Cytochrome P450 72A11 (EC 1.14.-.-),Cytochrome P450 72A15 (EC 1.14.-.-),Cytochrome P450 72A14 (EC 1.14.-.-),Cytochrome P450 72A13 (EC 1.14.-.-),Cytochrome P450 (Cytochrome P450, family 72, subfamily A, polypeptide 7),Cytochrome P450, family 72, subfamily A, polypeptide 10,Cytochrome P450, family 72, subfamily A, polypeptide 13,Cytochrome P450, family 72, subfamily A, polypeptide 15 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2089586;,locus:2089521;,locus:2089621;,locus:2089596;,locus:2089526;,locus:2089561; AT3G14650,AT3G14690,AT3G14680,AT3G14660,AT3G14610,AT3G14640 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EB52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase subunit D NA NA NA NA NA NA NA ENOG411EB53 SUB Q8RWZ1,A0A1P8ARR6 SUB_ARATH,A0A1P8ARR6_ARATH Protein STRUBBELIG (Leucine-rich repeat receptor kinase-like protein SUB) (Protein SCRAMBLED),Leucine-rich repeat protein kinase family protein Position of root-hair cells is scrambled. Only 66% of epidermal cells (compared with 92% in wild type) overlying two cortical cells develop as root hairs and 21% of epidermal cells overlying one cortical cell (compared with 1% in wild type) develop as root hairs. Short, twisted inflorescence stems; Abnormal ovules-K. Schneitz-2005 FUNCTION: Regulates the expression of transcription factors that define the cell fates. Acts in a non-cell-autonomous fashion, functions in a radial inside-out signaling process, and mediates cell morphogenesis and cell fate across clonally distinct cell layers in floral primordia, developing ovules, and root meristems. Seems to be required for the regulation of cell shape and the orientation of the mitotic division plane. Involved in root hair specification, in the formation of the outer integument and the shape of organs such as carpels and petals and is necessary for the shape and height of the stem. Non-functional SUB proteins are retained in the endoplasmic reticulum and degraded by endoplasmic reticulum-associated degradation (ERAD). {ECO:0000269|PubMed:15618487, ECO:0000269|PubMed:16317033, ECO:0000269|PubMed:17027738, ECO:0000269|PubMed:18771664, ECO:0000269|PubMed:21603601}. MISCELLANEOUS: Cannot be functionally replaced by the SRF1 to SRF8 proteins.; MISCELLANEOUS: The sub/scm phenotype is sensitive to ecotype and is greatly reduced in cv. Columbia background.; MISCELLANEOUS: Phosphorylation of Thr-486, Thr-494 or Ser-656 is not required for SUB function. {ECO:0000305|PubMed:21603601}. R-ATH-446652; 84460,75964 Protein STRUBBELIG (Leucine-rich repeat receptor kinase-like protein SUB) (Protein SCRAMBLED),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; signal transducer, downstream of receptor, with serine/threonine kinase activity [GO:0004702]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell morphogenesis [GO:0000902]; cell surface receptor signaling pathway [GO:0007166]; floral organ development [GO:0048437]; leaf development [GO:0048366]; leaf vascular tissue pattern formation [GO:0010305]; plant ovule development [GO:0048481]; positive regulation of atrichoblast fate specification [GO:0010059]; positive regulation of trichoblast fate specification [GO:0010063]; protein phosphorylation [GO:0006468]; regulation of cell proliferation [GO:0042127]; root meristem specification [GO:0010071]; shoot system development [GO:0048367],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] DEVELOPMENTAL STAGE: Required for epidermal patterning during postembryonic root development, but not involved in hypocotyl development. {ECO:0000269|PubMed:17027738}. TISSUE SPECIFICITY: Expressed in leaves, stems, inflorescences, flower buds and developing root epidermis. {ECO:0000269|PubMed:15618487, ECO:0000269|PubMed:15951420}. locus:2202084; AT1G11130 STYKc NA NA NA NA NA NA NA ENOG411EB50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411EB51 LECRK51 O04534 LRK51_ARATH Putative L-type lectin-domain containing receptor kinase V.1 (Arabidopsis thaliana lectin-receptor kinase b2) (AthlecRK-b2) (LecRK-V.1) (EC 2.7.11.1) 2.7.11.1 74578 Putative L-type lectin-domain containing receptor kinase V.1 (Arabidopsis thaliana lectin-receptor kinase b2) (AthlecRK-b2) (LecRK-V.1) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674] locus:2020608; AT1G70110 Legume lectin domain NA NA NA NA NA NA NA ENOG411EB56 AHA2,AHA1,AHA3,HA1,HA3,HA2 P19456,P20649,P20431,Q9T0E0,A0A1P8AYX4,A0A1P8BD43,F4JPJ7 PMA2_ARATH,PMA1_ARATH,PMA3_ARATH,PMAX_ARATH,A0A1P8AYX4_ARATH,A0A1P8BD43_ARATH,F4JPJ7_ARATH ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2),ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1),ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3),Putative ATPase, plasma membrane-like,Plasma membrane ATPase (EC 3.6.3.6) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, due to the redudancy with AHA1. Aha1 and aha2 double mutants are embryo lethal. {ECO:0000269|PubMed:20348108}.,DISRUPTION PHENOTYPE: No visible phenotype, due to the redudancy with AHA2. Aha1 and aha2 double mutants are embryo lethal. {ECO:0000269|PubMed:20348108}. Impaired stomatal response to ABA. Higher proton extrusion in plants. Complete male gametophyte defective-M. Sussman-2004 FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport (PubMed:10748244, PubMed:12920605, PubMed:27013734). The resulting external acidification and/or internal alkinization may mediate growth responses (PubMed:10748244, PubMed:12920605). Involved in maintaining the membrane potential and delta-pH, together forming the plasma membrane protonmotive force (PMF) required for root and hypocotyl elongation and root tropism (PubMed:22214817, PubMed:24492258). Important for root growth and development during different nitrogen regimes (PubMed:25382626). Forms a functional cation-translocating unit with CNGC17 that is activated by PSKR1/BAK1 and possibly other BAK1/RLK complexes (PubMed:26071421). {ECO:0000269|PubMed:12920605, ECO:0000269|PubMed:22214817, ECO:0000269|PubMed:24492258, ECO:0000269|PubMed:25382626, ECO:0000269|PubMed:26071421, ECO:0000269|PubMed:27013734, ECO:0000305|PubMed:10748244}.,FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses. Forms a functional cation-translocating unit with CNGC17 that is activated by PSKR1/BAK1 and possibly other BAK1/RLK complexes (PubMed:26071421). {ECO:0000269|PubMed:26071421}.,FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses. MISCELLANEOUS: The catalytic mechanism involves at least four different enzyme conformational states named E1, E1P, E2P, and E2, with the E1P-E2P transition accompanying the transfer of ion across the membrane. E1P and E2P are phosphorylated intermediates. {ECO:0000305|PubMed:10748244}. ARA:AT4G30190-MONOMER;,ARA:AT2G18960-MONOMER;,ARA:AT5G57350-MONOMER;,ARA:AT4G11730-MONOMER; 3.6.3.6; 3.6.3.6 104401,104224,104450,90439,96858,76668,108316 ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2),ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1),ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3),Putative ATPase, plasma membrane-like,Plasma membrane ATPase (EC 3.6.3.6) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; magnesium ion binding [GO:0000287]; ATP biosynthetic process [GO:0006754]; ATP hydrolysis coupled proton transport [GO:0015991],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; magnesium ion binding [GO:0000287]; ATP biosynthetic process [GO:0006754]; ATP hydrolysis coupled proton transport [GO:0015991]; proton transport [GO:0015992]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; stomatal opening [GO:1990069],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; magnesium ion binding [GO:0000287]; ATP biosynthetic process [GO:0006754]; ATP hydrolysis coupled proton transport [GO:0015991],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; metal ion binding [GO:0046872],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; ATP biosynthetic process [GO:0006754],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; ATP biosynthetic process [GO:0006754] DEVELOPMENTAL STAGE: Expressed on the surface of developing seeds and up to the early globular stage of embryo development. {ECO:0000269|PubMed:20348108}.,DEVELOPMENTAL STAGE: Expressed on the surface of developing seeds and from 8- to 16-cell stages to the heart stage of embryo development. {ECO:0000269|PubMed:20348108}. TISSUE SPECIFICITY: Higher levels in roots than in shoots (PubMed:2143186). Expressed in epidermal and root cortex cells, in phloem, xylem and root hairs (PubMed:17483306). Detected in cotyledons, hypocotyls, roots and root hairs (PubMed:25267325). {ECO:0000269|PubMed:17483306, ECO:0000269|PubMed:2143186, ECO:0000269|PubMed:25267325}.,TISSUE SPECIFICITY: Found predominantly in phloem cells of leaves, stems, roots and flowers. locus:2044450;,locus:2165600;,locus:2139782;,locus:2128941; AT4G30190,AT2G18960,AT5G57350,AT4G11730 Cation_ATPase_N NA NA NA NA NA NA NA ENOG411EB57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLC domain NA NA NA NA NA NA NA ENOG411EB54 ATL77 Q9LS99 ATL77_ARATH RING-H2 finger protein ATL77 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL77) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 24463 RING-H2 finger protein ATL77 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL77) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2830088; AT3G18773 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EB55 A0A1I9LR02,A0A1I9LQZ5,A0A1I9LQZ9,A0A1I9LR03,F4J3C1,A0A1I9LQZ7,A0A178VI21,A0A1I9LQZ8,A0A1I9LQZ6 A0A1I9LR02_ARATH,A0A1I9LQZ5_ARATH,A0A1I9LQZ9_ARATH,A0A1I9LR03_ARATH,F4J3C1_ARATH,A0A1I9LQZ7_ARATH,A0A178VI21_ARATH,A0A1I9LQZ8_ARATH,A0A1I9LQZ6_ARATH Eukaryotic aspartyl protease family protein 39361,47364,43989,48765,53227,45689,38101,44287,54629 Eukaryotic aspartyl protease family protein aspartic-type endopeptidase activity [GO:0004190],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2080973; AT3G51360 aspartyl protease family protein NA NA NA NA NA NA NA ENOG411EGA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: -acetyltransferase NA NA NA NA NA NA NA ENOG411EGA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0864632 protein A0A0N7KE42 A0A0N7KE42_ORYSJ Os01g0864632 OSNPB_010864632 ENOG411EGA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGAN Q944J0,Q84MC9 SPCS1_ARATH,Q84MC9_ARATH Probable signal peptidase complex subunit 1 (EC 3.4.-.-) (Microsomal signal peptidase 12 kDa subunit) (SPase 12 kDa subunit),At4g40042 (Microsomal signal peptidase 12 kDa subunit (SPC12)) FUNCTION: Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. {ECO:0000250}. 3.4.-.- 10373,10499 Probable signal peptidase complex subunit 1 (EC 3.4.-.-) (Microsomal signal peptidase 12 kDa subunit) (SPase 12 kDa subunit),At4g40042 (Microsomal signal peptidase 12 kDa subunit (SPC12)) integral component of endoplasmic reticulum membrane [GO:0030176]; organelle membrane [GO:0031090]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; protein targeting to ER [GO:0045047]; signal peptide processing [GO:0006465],integral component of endoplasmic reticulum membrane [GO:0030176]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; protein targeting to ER [GO:0045047]; signal peptide processing [GO:0006465] locus:505006266;,locus:504955243; AT2G22425,AT4G40042 Microsomal signal peptidase 12 kDa subunit (SPC12) NA NA NA NA NA NA NA ENOG411EGAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF2E Q9SZ74 CNIH5_ARATH Protein cornichon homolog 5 15961 Protein cornichon homolog 5 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2118101; AT4G12090 Cornichon protein NA NA NA NA NA NA NA ENOG411EGAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0182500 protein B9ETH8 B9ETH8_ORYSJ Os01g0182500 OsJ_00640 OSNPB_010182500 ENOG411EGAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EF2A Q9SUS7 Q9SUS7_ARATH Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein AT4g11340) 56971 Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein AT4g11340) signal transduction [GO:0007165] locus:2128273; AT4G11340 TIR NA NA NA NA NA NA NA ENOG411E57Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-binding WIYLD domain Os09g0114700 protein A0A0P0XII4 A0A0P0XII4_ORYSJ Os09g0114700 OSNPB_090114700 ENOG411E57W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E57U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411E57Z O64874 O64874_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g44400) 16073 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g44400) locus:2050517; AT2G44400 C1 domain NA NA NA NA NA NA NA ENOG411E57X Q9C9R3,Q8LFJ5 T112B_ARATH,T112A_ARATH Multifunctional methyltransferase subunit TRM112-like protein At1g78190 (tRNA methyltransferase 112 homolog),Multifunctional methyltransferase subunit TRM112-like protein At1g22270 (tRNA methyltransferase 112 homolog) Dwarf; Short roots-Y. Hu-2009 FUNCTION: Acts as an activator of both rRNA/tRNA and protein methyltransferases (By similarity). Required for TRM9 tRNA methyltransferase activity (PubMed:21653555). {ECO:0000250|UniProtKB:P53738, ECO:0000269|PubMed:21653555}.,FUNCTION: Acts as an activator of both rRNA/tRNA and protein methyltransferases (By similarity). Required for TRM9 tRNA methyltransferase activity (PubMed:21653555). Involved in the regulation of cell division progression during organ growth. Required for the expression of cell cycle-related genes, and the G2-M phase progression during organogenesis (PubMed:19929876). {ECO:0000250|UniProtKB:P53738, ECO:0000269|PubMed:19929876, ECO:0000269|PubMed:21653555}. R-ATH-156581;R-ATH-72764; 14262,13961 Multifunctional methyltransferase subunit TRM112-like protein At1g78190 (tRNA methyltransferase 112 homolog),Multifunctional methyltransferase subunit TRM112-like protein At1g22270 (tRNA methyltransferase 112 homolog) peptidyl-glutamine methylation [GO:0018364]; rRNA (guanine-N7)-methylation [GO:0070476]; tRNA methylation [GO:0030488],cytosol [GO:0005829]; organ growth [GO:0035265]; peptidyl-glutamine methylation [GO:0018364]; regulation of cell cycle [GO:0051726]; regulation of cell proliferation [GO:0042127]; rRNA (guanine-N7)-methylation [GO:0070476]; tRNA methylation [GO:0030488] locus:2194724;,locus:2196536; AT1G78190,AT1G22270 TRM112-like protein Os07g0623000 protein (cDNA clone:001-119-F11, full insert sequence) Q8LHL4 Q8LHL4_ORYSJ P0524E08.108 Os07g0623000 OsJ_25175 OSNPB_070623000 ENOG411E4C6 OSB1 Q9SX99 OSB1_ARATH Protein OSB1, mitochondrial (Organellar single-stranded DNA-binding protein 1) DISRUPTION PHENOTYPE: Severe leaf variegation, distortion and partial sterility. {ECO:0000269|PubMed:17189341}. Retarted root growth variegated and distorted leaves distorted flowers partial sterile and unviable seeds. Increased number but decreased size of mitochondria. Dwarf; Short roots; Variegated leaves; Abnormal leaf and flower morphology; Reduced fertility-P. Imbault-2006 FUNCTION: Regulates mitochondrial DNA recombination. Represses homologous recombination, preventing mitochondrial genome instability and unbalanced transmission of alternative mtDNA configurations. Binds preferentially single-stranded DNA. Does not bind to RNA. {ECO:0000269|PubMed:17189341}. 30564 Protein OSB1, mitochondrial (Organellar single-stranded DNA-binding protein 1) apoplast [GO:0048046]; mitochondrion [GO:0005739]; single-stranded DNA binding [GO:0003697]; mitochondrial genome maintenance [GO:0000002]; negative regulation of DNA recombination [GO:0045910] TISSUE SPECIFICITY: Expressed in root elongation zone and in gametophytic cells. {ECO:0000269|PubMed:17189341}. locus:2015353; AT1G47720 Single-strand binding protein family NA NA NA NA NA NA NA ENOG411E4C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family Os01g0124900 protein A0A0P0UY51 A0A0P0UY51_ORYSJ Os01g0124900 OSNPB_010124900 ENOG411E4C4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 11c (OsTIFY11c) (Jasmonate ZIM domain-containing protein 11) (OsJAZ11) (OsJAZ2),Protein TIFY 11d (OsTIFY11d) (Jasmonate ZIM domain-containing protein 12) (OsJAZ12) (OsJAZ1) Q8GRS2,Q7XEZ1 TI11C_ORYSJ,TI11D_ORYSJ TIFY11C JAZ11 Os03g0180900 LOC_Os03g08320 OsJ_09657 OSJNBa0050H14.23 OSJNBb0076N15.9,TIFY11D JAZ12 Os10g0392400 LOC_Os10g25290 OsJ_31396 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}.,FUNCTION: Repressor of jasmonate (JA) responses (By similarity). May act on an initial response of JA-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex (PubMed:21332845). {ECO:0000250|UniProtKB:Q7XPM8, ECO:0000269|PubMed:21332845}. ENOG411E4C5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0511400 protein (cDNA clone:J023027A22, full insert sequence) Q84YI9 Q84YI9_ORYSJ Os08g0511400 Os08g0511400 OSJNBa0016N23.133 OSNPB_080511400 ENOG411E4C2 HIPP31 Q84K70,A0A178VJK9 HIP31_ARATH,A0A178VJK9_ARATH Heavy metal-associated isoprenylated plant protein 31 (AtHIP31),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 15752,15534 Heavy metal-associated isoprenylated plant protein 31 (AtHIP31),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2101343; AT3G48970 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E4C3 MYB82 Q9LTF7 MYB82_ARATH Transcription factor MYB82 (Myb-related protein 82) (AtMYB82) FUNCTION: Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. MISCELLANEOUS: At least one of the two introns in the MYB82 gene is essential to the protein's trichome developmental function. The MYB-binding box (5'-TAAGCCAGTTATGTCT-3') located in the third exon of the MYB82 gene is required for MYB82 function in trichome initiation. {ECO:0000269|PubMed:24803498}. 23292 Transcription factor MYB82 (Myb-related protein 82) (AtMYB82) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; multicellular organism development [GO:0007275]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}. locus:504955052; AT5G52600 transcription factor NA NA NA NA NA NA NA ENOG411E4C0 MWD9.23 Q9FMQ8 Q9FMQ8_ARATH Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At5g22430) 18107 Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At5g22430) anchored component of membrane [GO:0031225] locus:2176322; AT5G22430 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411E4C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein light chain type 1 NA NA NA NA NA NA NA ENOG411E4C8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os09g0340700 protein,Os09g0392300 protein Q6EQC6,A0A0P0XLQ9 Q6EQC6_ORYSJ,A0A0P0XLQ9_ORYSJ Os09g0340700 OJ1104_G11.30 OsJ_28967 OSNPB_090340700 P0448B03.3,Os09g0392300 OSNPB_090392300 ENOG411E4C9 WRKY55 Q9SHB5,Q4PSR2,A0A1P8AZP8 WRK55_ARATH,Q4PSR2_ARATH,A0A1P8AZP8_ARATH WRKY transcription factor 55 (WRKY DNA-binding protein 55),WRKY DNA-binding protein 55 (WRKY family transcription factor),WRKY DNA-binding protein 55 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 32489,27467,33602 WRKY transcription factor 55 (WRKY DNA-binding protein 55),WRKY DNA-binding protein 55 (WRKY family transcription factor),WRKY DNA-binding protein 55 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2064816; AT2G40740 WRKY transcription factor Os05g0321900 protein (Putative WRKY transcription factor) (Putative WRKY transcription factor 75) Q5W6D9 Q5W6D9_ORYSJ Os05g0321900 Os05g0321900 OSJNBb0006B22.17 OSJNBb0109A13.5 OSNPB_050321900 ENOG411E57C Q8RXH9 Q8RXH9_ARATH AT5G58005 protein (Cytochrome c oxidase, subunit Vib family protein) (Uncharacterized protein At5g58005) 13298 AT5G58005 protein (Cytochrome c oxidase, subunit Vib family protein) (Uncharacterized protein At5g58005) mitochondrion [GO:0005739] locus:504954864; AT5G58005 Cytochrome oxidase c subunit VIb Os08g0441400 protein (cDNA clone:001-113-G10, full insert sequence) (cDNA clone:002-103-A11, full insert sequence) Q6Z9E8 Q6Z9E8_ORYSJ Os08g0441400 Os08g0441400 OsJ_27479 OSNPB_080441400 P0528B09.34 ENOG411E4CF DIR23 Q84TH6 DIR23_ARATH Dirigent protein 23 (AtDIR23) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 20594 Dirigent protein 23 (AtDIR23) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2047002; AT2G21100 Disease resistance response protein NA NA NA NA NA NA NA ENOG411E4CG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E4CD Q7XJ58 Q7XJ58_ARATH At1g21010 (Poly polymerase) (Uncharacterized protein At1g21010) 22975 At1g21010 (Poly polymerase) (Uncharacterized protein At1g21010) locus:2037400; AT1G21010 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E4CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR12 (OsRR12) (OsRRA11),Two-component response regulator ORR8 (OsRR8) (OsRRA13),Os08g0358800 protein,Os08g0377175 protein Q2HWG1,Q8GVV6,A0A0P0XEU2,A0A0N7KPS1 ORR12_ORYSJ,ORR8_ORYSJ,A0A0P0XEU2_ORYSJ,A0A0N7KPS1_ORYSJ RR12 Os08g0377200 LOC_Os08g28950 OJ1705_C03.124 OsJ_27123,RR8 Os08g0376700 LOC_Os08g28900 OJ1705_C03.116 P0436B06.42,Os08g0358800 OSNPB_080358800,Os08g0377175 OSNPB_080377175 DISRUPTION PHENOTYPE: Dwarf, narrow leaf and low tillering phenotypes. {ECO:0000269|PubMed:16891544}.,DISRUPTION PHENOTYPE: Dwarf, narrow leaves, low tillering and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411E4CB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0254400 protein,Os01g0254850 protein (Fragment) Q5NBT7,A0A0P0V0L9 Q5NBT7_ORYSJ,A0A0P0V0L9_ORYSJ Os01g0254400 OsJ_01138 OSNPB_010254400 P0705D01.16 P0711E10.6,Os01g0254850 OSNPB_010254850 ENOG411E4CC F24B22.160 Q9M386 Q9M386_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At3g54200) (Uncharacterized protein F24B22.160) 25784 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At3g54200) (Uncharacterized protein F24B22.160) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2080320; AT3G54200 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E4CN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA fiber protein Fb2 Os12g0556100 protein (cDNA, clone: J100048N01, full insert sequence) B7FA64 B7FA64_ORYSJ Os12g0556100 OSNPB_120556100 ENOG411E4CM Q5XET8 Q5XET8_ARATH At5g33300 (Chromosome-associated kinesin-like protein) 49102 At5g33300 (Chromosome-associated kinesin-like protein) locus:2145934; AT5G33300 CXC NA NA NA NA NA NA NA ENOG411E4CJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os08g0451200 protein B9G176 B9G176_ORYSJ Os08g0451200 OsJ_27531 OSNPB_080451200 ENOG411EF4C Q9STH5 Q9STH5_ARATH At4g12360 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein AT4g12360) (Uncharacterized protein T4C9.200) 16330 At4g12360 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein AT4g12360) (Uncharacterized protein T4C9.200) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2139049; AT4G12360 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411E4CH LBD25 Q8L8Q3 LBD25_ARATH LOB domain-containing protein 25 (ASYMMETRIC LEAVES 2-like protein 3) (AS2-like protein 3) 17749 LOB domain-containing protein 25 (ASYMMETRIC LEAVES 2-like protein 3) (AS2-like protein 3) TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. locus:2089184; AT3G27650 lob domain-containing protein NA NA NA NA NA NA NA ENOG411E4CI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0118100 protein) (cDNA clone:001-115-C01, full insert sequence) (cDNA clone:J013105G11, full insert sequence),Os10g0214501 protein Q10SM0,A0A0P0XSN2 Q10SM0_ORYSJ,A0A0P0XSN2_ORYSJ Os03g0118100 LOC_Os03g02660 Os03g0118100 OSNPB_030118100,Os10g0214501 OSNPB_100214501 ENOG411E4CV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: finger protein Os08g0464400 protein,Os09g0446275 protein (Fragment),Os09g0446500 protein Q6YUA3,A0A0P0XN47,A0A0P0XMT4 Q6YUA3_ORYSJ,A0A0P0XN47_ORYSJ,A0A0P0XMT4_ORYSJ Os08g0464400 Os08g0464400 B1116H04.33 OSNPB_080464400,Os09g0446275 OSNPB_090446275,Os09g0446500 OSNPB_090446500 ENOG411E4CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: wd repeat Os02g0288925 protein Q6K8A0 Q6K8A0_ORYSJ OJ1756_H07.42 Os02g0288925 OSNPB_020288925 ENOG411E4CT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os01g0199700 protein A0A0P0UZB5 A0A0P0UZB5_ORYSJ Os01g0199700 OSNPB_010199700 ENOG411E4CU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0537100 protein,Os06g0540050 protein,Os06g0537300 protein (Fragment) Q5Z6V3,B9FTM8,A0A0P0WXD1 Q5Z6V3_ORYSJ,B9FTM8_ORYSJ,A0A0P0WXD1_ORYSJ Os06g0537100 OsJ_21584 OSNPB_060537100 P0551A03.20,Os06g0540050 OsJ_21604 OSNPB_060540050,Os06g0537300 OSNPB_060537300 ENOG411E4CR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os05g0220300 protein (Fragment) A0A0N7KKC8 A0A0N7KKC8_ORYSJ Os05g0220300 OSNPB_050220300 ENOG411E4CS PSAG Q9S7N7 PSAG_ARATH Photosystem I reaction center subunit V, chloroplastic (PSI-G) Phenotype not described.,Complete loss of PSI-G in thylakoids.,Decrease in mean size.,Germination of mutant seeds was not affected and visual inspection did not reveal any drastic change in phenotype compared with WT plants except for a slightly lighter pigmentation.,The Chl a/b ratio was slightly reduced.,The level of the xanthophyll cycle pigments (VAZ-pool) was higher than in WT plants.,The total Chl content (Chla and Chlb) was decreased by about 25% compared to wild type.,Under long-day conditions mutant plants flowered 8 d later than wild type.,Double mutants were intermediate in mean size when compared with the corresponding single mutants.,No drop in total Chl levels.,Increase in the Chl a/b ratio. Dwarf; Pale green; Late flowering-D. Leister-2002 FUNCTION: Not yet known. MetaCyc:AT1G55670-MONOMER; 17085 Photosystem I reaction center subunit V, chloroplastic (PSI-G) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast photosystem I [GO:0030093]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; photosynthesis [GO:0015979]; photosynthetic electron transport in photosystem I [GO:0009773]; photosynthetic NADP+ reduction [GO:0009780]; photosystem I stabilization [GO:0042550]; protein stabilization [GO:0050821] locus:2020502; AT1G55670 photosystem I reaction center subunit V Os09g0481200 protein (Fragment) A0A0P0XNM8 A0A0P0XNM8_ORYSJ Os09g0481200 OSNPB_090481200 ENOG411E4CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0275600 protein,Os12g0275201 protein Q2QU26,A0A0P0Y8Y4 Q2QU26_ORYSJ,A0A0P0Y8Y4_ORYSJ Os12g0275600 LOC_Os12g17710 OsJ_17696 OSNPB_120275600,Os12g0275201 OSNPB_120275201 ENOG411E4CQ Q56XV3 Q56XV3_ARATH Putative RING zinc finger protein (RING zinc finger protein) 19532 Putative RING zinc finger protein (RING zinc finger protein) locus:504955822; AT3G06145 Inherit from KOG: RING finger NA NA NA NA NA NA NA ENOG411E4CZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0196700 protein (cDNA clone:J023028G13, full insert sequence) Q688L7 Q688L7_ORYSJ Os05g0196700 Os05g0196700 OSNPB_050196700 P0617H07.11 P0636E04.3 ENOG411E4CX Q9SAA7 Q9SAA7_ARATH At1g11700 (F25C20.15 protein) (Uncharacterized protein At1g11700) 21779 At1g11700 (F25C20.15 protein) (Uncharacterized protein At1g11700) chloroplast [GO:0009507] locus:2027392; AT1G11700 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E4CY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os03g0830600 protein (Pectinesterase inhibitor domain containing protein, expressed) Q850Z0 Q850Z0_ORYSJ OSJNBb0027B08.15 LOC_Os03g61510 Os03g0830600 OsJ_13222 OSJNBa0078D06.12 OSNPB_030830600 ENOG411E57F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411E57E PRIP Q8W1B3 Q8W1B3_ARATH At4g21445 (Putative receptor-interacting protein) (Receptor-interacting protein) 17618 At4g21445 (Putative receptor-interacting protein) (Receptor-interacting protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; NADH dehydrogenase complex (plastoquinone) assembly [GO:0010258] locus:504955530; AT4G21445 NA OSJNBa0043L09.26 protein (Os04g0635700 protein) (cDNA clone:001-043-G04, full insert sequence) (cDNA clone:J013002J07, full insert sequence) Q7XQS1 Q7XQS1_ORYSJ Os04g0635700 Os04g0635700 OsJ_16313 OSJNBa0043L09.26 OSNPB_040635700 ENOG411EF4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411EF4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0712250 protein,Os01g0712900 protein A0A0P0V798,A0A0P0V799 A0A0P0V798_ORYSJ,A0A0P0V799_ORYSJ Os01g0712250 OSNPB_010712250,Os01g0712900 OSNPB_010712900 ENOG411EF4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0140600 protein,Os08g0140850 protein A0A0P0XC57,A0A0P0XCF3 A0A0P0XC57_ORYSJ,A0A0P0XCF3_ORYSJ Os08g0140600 OSNPB_080140600,Os08g0140850 OSNPB_080140850 ENOG411E3IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0168900 protein A0A0P0UZ63 A0A0P0UZ63_ORYSJ Os01g0168900 OSNPB_010168900 ENOG411EJCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: anaphase promoting complex subunit 4 NA NA NA NA NA NA NA ENOG411EJCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411EJCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EJCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJCX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family NA NA NA NA NA NA NA ENOG411EJCE PSK1 Q9LMY9 PSK1_ARATH Phytosulfokines 1 (AtPSK1) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. {ECO:0000250}. 9653 Phytosulfokines 1 (AtPSK1) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] extracellular matrix [GO:0031012]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; cell growth [GO:0016049]; cell proliferation [GO:0008283]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed only in roots. {ECO:0000269|PubMed:16829587}. locus:2009917; AT1G13590 phytosulfokine 1 precursor NA NA NA NA NA NA NA ENOG411EJCB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EJCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis (By similarity) NA NA NA NA NA NA NA ENOG411DZPB Q8L7Q0,A0A1P8AR30,A0A1P8AR23,A0A1P8AR80,F4HXB8 Q8L7Q0_ARATH,A0A1P8AR30_ARATH,A0A1P8AR23_ARATH,A0A1P8AR80_ARATH,F4HXB8_ARATH Agenet and bromo-adjacent homology (BAH) domain-containing protein (At1g68580) (Uncharacterized protein At1g68580),Agenet and bromo-adjacent homology (BAH) domain-containing protein 74128,63124,68682,60351,49347 Agenet and bromo-adjacent homology (BAH) domain-containing protein (At1g68580) (Uncharacterized protein At1g68580),Agenet and bromo-adjacent homology (BAH) domain-containing protein plasmodesma [GO:0009506]; chromatin binding [GO:0003682],chromatin binding [GO:0003682] locus:2026874; AT1G68580 Agenet domain-containing protein bromo-adjacent homology (BAH) domain-containing protein Os08g0431100 protein (Fragment),Os08g0431100 protein Q0J5J1,Q6ZKB4,A0A0P0XFZ9,A0A0P0XG83 Q0J5J1_ORYSJ,Q6ZKB4_ORYSJ,A0A0P0XFZ9_ORYSJ,A0A0P0XG83_ORYSJ Os08g0431100 Os08g0431100 OSNPB_080431100,Os08g0431100 OJ1111_B08.7 OJ1124_B05.16 OSNPB_080431100,Os08g0431100 OSNPB_080431100 ENOG411DZPC ARF17 Q84WU6,P92530,A0A1P8AU56 ARFQ_ARATH,M940_ARATH,A0A1P8AU56_ARATH Auxin response factor 17,Uncharacterized mitochondrial protein AtMg00940 (ORF164),Auxin response factor FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07677) is not demonstrated. 63742,18341,64974 Auxin response factor 17,Uncharacterized mitochondrial protein AtMg00940 (ORF164),Auxin response factor nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; adventitious root development [GO:0048830]; anatomical structure morphogenesis [GO:0009653]; auxin-activated signaling pathway [GO:0009734]; callose deposition in cell wall [GO:0052543]; pollen development [GO:0009555]; pollen wall assembly [GO:0010208]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],mitochondrion [GO:0005739]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; response to hormone [GO:0009725],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2029436;,locus:504954577; AT1G77850,ATMG00940 auxin response factor NA NA NA NA NA NA NA ENOG411DZPA F4I444 F4I444_ARATH Eisosome protein Mutant meristems develop abnormally.The meristem is enlarged shortly after germination and appears disorganized. Primordia are irregular and lateral organs produced include tubular and finger-like structures. Also affects the development of roots. Primary root growth is inhibited. The root apical meristems are enlarged and lack distinct columella cells or starch granules. 49017 Eisosome protein locus:2024177; AT1G04030 NA Os04g0511700 protein (Fragment) Q0JBS9 Q0JBS9_ORYSJ Os04g0511700 Os04g0511700 OSNPB_040511700 ENOG411DZPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA trans-cinnamate Os02g0467600 protein (Putative cinnamate 4-hydroxylase),Os02g0467000 protein Q6K7B1,A0A0P0VIT4 Q6K7B1_ORYSJ,A0A0P0VIT4_ORYSJ Os02g0467600 Os02g0467600 OJ1342_D02.28 OSNPB_020467600,Os02g0467000 OSNPB_020467000 ENOG411DZPG Q5XV04 Q5XV04_ARATH Wall-associated receptor kinase galacturonan-binding protein 33259 Wall-associated receptor kinase galacturonan-binding protein kinase activity [GO:0016301]; polysaccharide binding [GO:0030247] locus:2157742; AT5G50290 NA Os05g0409100 protein A0A0P0WM57 A0A0P0WM57_ORYSJ Os05g0409100 OSNPB_050409100 ENOG411DZPD RUS2 Q9SJX7 RUS2_ARATH Protein root UVB sensitive 2, chloroplastic (Protein WEAK AUXIN RESPONSE 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Extremely stunted growth, failure to develop true postembryonic leaves and arrested primary root elongation, when grown in vitro. {ECO:0000269|PubMed:19515790}. Short roots; Seedling lethal when roots are exposed to UV-B light-Z. He-2009 FUNCTION: Involved in a root UV-B sensing pathway and in the protection against the hypersensitivity to very low-fluence-rate (VLF) UV-B. RSU1 and RUS2 are probably both negative modulators of the same UV-B perception pathway, which when overstimulated in the roots causes a block to postgermination development. Required for polar auxin transport and to maintain the normal levels of PIN proteins in the root. {ECO:0000269|PubMed:19515790, ECO:0000269|PubMed:20562234}. MISCELLANEOUS: Several mutations in ASP2 (AC P46645), but not all, and any of the non-phosphorylated B6 vitamers can suppress the rus phenotype. {ECO:0000269|PubMed:21511809}. 48259 Protein root UVB sensitive 2, chloroplastic (Protein WEAK AUXIN RESPONSE 1) chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; plastid [GO:0009536]; auxin polar transport [GO:0009926]; response to UV-B [GO:0010224] TISSUE SPECIFICITY: Expressed throughout the plant, with a higher expression near the root apical meristem, in the cortex region of the root elongation zone, in lateral roots and emerging lateral roots. Not detected in extreme root apical meristem or root cap. {ECO:0000269|PubMed:19515790, ECO:0000269|PubMed:20562234}. locus:2042536; AT2G31190 UPF0420 protein C16orf58 homolog Os04g0517300 protein (cDNA clone:J023036K12, full insert sequence) Q0JBQ4 Q0JBQ4_ORYSJ Os04g0517300 Os04g0517300 OSNPB_040517300 ENOG411DZPE Q9SYJ3,Q9FZ23,A0A1P8B975 Q9SYJ3_ARATH,Q9FZ23_ARATH,A0A1P8B975_ARATH At4g01960 (Transmembrane protein) (Uncharacterized protein At4g01960) (Uncharacterized protein T7B11.22),T6A9.7 protein (Transmembrane protein),Transmembrane protein 26755,25747,22547 At4g01960 (Transmembrane protein) (Uncharacterized protein At4g01960) (Uncharacterized protein T7B11.22),T6A9.7 protein (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2141420;,locus:2204903; AT4G01960,AT1G02380 NA Os05g0131900 protein (cDNA clone:J013001I13, full insert sequence),Os05g0131900 protein Q65XT4,A0A0P0WHL6 Q65XT4_ORYSJ,A0A0P0WHL6_ORYSJ Os05g0131900 OsJ_17007 OSNPB_050131900 P0033D06.14,Os05g0131900 OSNPB_050131900 ENOG411DZPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein Ethylene-responsive protein-like (Os02g0707900 protein) (Putative ethylene-responsive protein) (cDNA clone:002-108-B05, full insert sequence) (cDNA clone:J033090F20, full insert sequence) Q8S3R7 Q8S3R7_ORYSJ 49D11.15 Os02g0707900 OsJ_08092 OSJNBb0060O16.24 OSNPB_020707900 ENOG411DZPK WNK8,WNK10 Q944Q0,Q8RXE5 WNK8_ARATH,WNK10_ARATH Serine/threonine-protein kinase WNK8 (AtWNK8) (EC 2.7.11.1) (Protein kinase with no lysine 8),Probable serine/threonine-protein kinase WNK10 (AtWNK10) (EC 2.7.11.1) (Protein kinase with no lysine 10) DISRUPTION PHENOTYPE: Plants display early flowering and altered expression of genes involved in the photoperiod flowering pathway, such as ELF4, TOC1, CO and FT. {ECO:0000269|PubMed:18761494}. FUNCTION: Regulates flowering time by modulating the photoperiod pathway. Phosphorylates the vacuolar ATPase subunit C (VATC) and RGS1 (PubMed:16427632, PubMed:18761494). Regulates EDM2 that, in turn, modulates development processes (PubMed:20840782, PubMed:20149132). {ECO:0000269|PubMed:16427632, ECO:0000269|PubMed:18761494, ECO:0000269|PubMed:20149132, ECO:0000269|PubMed:20840782}.,FUNCTION: May regulate flowering time by modulating the photoperiod pathway. {ECO:0000250}. 2.7.11.1 63803,59246 Serine/threonine-protein kinase WNK8 (AtWNK8) (EC 2.7.11.1) (Protein kinase with no lysine 8),Probable serine/threonine-protein kinase WNK10 (AtWNK10) (EC 2.7.11.1) (Protein kinase with no lysine 10) cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; photoperiodism, flowering [GO:0048573]; positive regulation of flower development [GO:0009911]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of flower development [GO:0009909]; vegetative to reproductive phase transition of meristem [GO:0010228],cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2165790;,locus:2019404; AT5G41990,AT1G64630 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DZPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA respiratory burst oxidase Os01g0835500 protein (Putative respiratory burst oxidase),Os05g0465800 protein,Os01g0835500 protein (Fragment),Os01g0835500 protein Q8S1T0,Q0DHH6,A0A0P0V9Z5,A0A0P0VA55 Q8S1T0_ORYSJ,Q0DHH6_ORYSJ,A0A0P0V9Z5_ORYSJ,A0A0P0VA55_ORYSJ P0506B12.18-1 Os01g0835500 OsJ_03990 OSNPB_010835500,Os05g0465800 Os05g0465800 OSNPB_050465800,Os01g0835500 OSNPB_010835500 ENOG411DZPI Q9ZU96 Y2168_ARATH Ankyrin repeat-containing protein At2g01680 58833 Ankyrin repeat-containing protein At2g01680 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2065434; AT2G01680 Ankyrin repeat-containing protein Os02g0735700 protein A0A0P0VPB6 A0A0P0VPB6_ORYSJ Os02g0735700 OSNPB_020735700 ENOG411DZPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Required for the retention of luminal endoplasmic reticulum proteins. Determines the specificity of the luminal ER protein retention system. Also required for normal vesicular traffic through the Golgi (By similarity) Os04g0376600 protein (cDNA clone:J033065H17, full insert sequence),Os09g0401900 protein (cDNA clone:002-107-A11, full insert sequence) (cDNA clone:J033131I01, full insert sequence) B7ES80,Q69MW8 B7ES80_ORYSJ,Q69MW8_ORYSJ Os04g0376600 OSNPB_040376600,Os09g0401900 OsJ_29295 OSJNBb0014M19.5 OSNPB_090401900 ENOG411DZPM RPS2 Q9LVT3,Q9C8T9,Q8RXS5,Q9FLB4,Q9LVT4,Q9SI85,Q42484,A0A1P8APC5,A0A1P8BFW5,A0A1P8AN05,A0A1P8AP86 DRL38_ARATH,DRL19_ARATH,DRL40_ARATH,DRL31_ARATH,DRL37_ARATH,DRL14_ARATH,RPS2_ARATH,A0A1P8APC5_ARATH,A0A1P8BFW5_ARATH,A0A1P8AN05_ARATH,A0A1P8AP86_ARATH Probable disease resistance protein At5g47260,Putative disease resistance protein At1g63350,Probable disease resistance protein At5g63020 (pNd11),Putative disease resistance protein At5g05400,Probable disease resistance protein At5g47250,Probable disease resistance protein At1g62630 (pNd4),Disease resistance protein RPS2 (Resistance to Pseudomonas syringae protein 2),Disease resistance protein (CC-NBS-LRR class) family,LRR and NB-ARC domains-containing disease resistance protein Resistant to Pseudomonas syringae-F. Ausubel-1994 FUNCTION: Potential disease resistance protein. {ECO:0000250}.,FUNCTION: Probable disease resistance protein. {ECO:0000250}.,FUNCTION: Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2. {ECO:0000269|PubMed:12581527}. 107732,102627,101801,99757,94801,101905,104641,105952,80450,96975,101819 Probable disease resistance protein At5g47260,Putative disease resistance protein At1g63350,Probable disease resistance protein At5g63020 (pNd11),Putative disease resistance protein At5g05400,Probable disease resistance protein At5g47250,Probable disease resistance protein At1g62630 (pNd4),Disease resistance protein RPS2 (Resistance to Pseudomonas syringae protein 2),Disease resistance protein (CC-NBS-LRR class) family,LRR and NB-ARC domains-containing disease resistance protein plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; defense response [GO:0006952]; signal transduction [GO:0007165],plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],mitochondrion [GO:0005739]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; detection of bacterium [GO:0016045]; plant-type hypersensitive response [GO:0009626]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952] locus:2171589;,locus:2031366;,locus:2166320;,locus:2153474;,locus:2171579;,locus:2203881;,locus:2005517; AT5G47260,AT1G63350,AT5G63020,AT5G05400,AT5G47250,AT1G62630,AT4G26090 disease resistance protein NB-ARC domain containing protein (Os11g0572301 protein) (cDNA, clone: J100071A18, full insert sequence),NB-ARC domain containing protein, expressed (Os03g0207000 protein),Os01g0788500 protein (Putative disease resistance protein RPS2) (cDNA clone:J013057M10, full insert sequence),Os12g0491200 protein,OSJNBa0089K21.4 protein (Os04g0470500 protein),NB-ARC domain containing protein, expressed (Os03g0207100 protein),Os12g0490800 protein Q2R2B2,Q8H068,Q5ZAY2,A3CHG8,Q7XQN2,Q8H067,A0A0P0YAC1 Q2R2B2_ORYSJ,Q8H068_ORYSJ,Q5ZAY2_ORYSJ,A3CHG8_ORYSJ,Q7XQN2_ORYSJ,Q8H067_ORYSJ,A0A0P0YAC1_ORYSJ Os11g0572301 LOC_Os11g36410 OSNPB_110572301,OSJNBa0014O06.4 Os03g0207000 LOC_Os03g10900 OsJ_09848 OSNPB_030207000,Os01g0788500 OsJ_03721 OSNPB_010788500 P0415A04.42,Os12g0491200 OsJ_36142 OSNPB_120491200,Os04g0470500 OsJ_15133 OSJNBa0089K21.4 OSNPB_040470500,OSJNBa0014O06.5 Os03g0207100 LOC_Os03g10910 OSNPB_030207100,Os12g0490800 OSNPB_120490800 ENOG411DZPR EXPA17 Q9ZSI1 EXP17_ARATH Putative expansin-A17 (AtEXPA17) (Alpha-expansin-17) (At-EXP17) (AtEx17) (Ath-ExpAlpha-1.13) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). Target of the transcriptional activator LBD18. Regulated by LBD18 to promote lateral root formation (PubMed:23872272). {ECO:0000250|UniProtKB:Q9LDR9, ECO:0000269|PubMed:23872272}. MISCELLANEOUS: Plants silencing EXPA17 exhibit reduced number of emerged lateral roots. Plants over-expressing EXPA17 show increased density of emerged lateral roots. {ECO:0000269|PubMed:23872272}. 27715 Putative expansin-A17 (AtEXPA17) (Alpha-expansin-17) (At-EXP17) (AtEx17) (Ath-ExpAlpha-1.13) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; lateral root formation [GO:0010311]; plant-type cell wall loosening [GO:0009828] DEVELOPMENTAL STAGE: Expressed during lateral root development. {ECO:0000269|PubMed:23872272}. locus:2133427; AT4G01630 plant-type cell wall organization Expansin-A8 (Alpha-expansin-8) (OsEXP8) (OsEXPA8) (OsaEXPa1.17) Q9XHX0 EXPA8_ORYSJ EXPA8 EXP8 Os01g0248900 LOC_Os01g14650 OSJNBa0049B20.23 P0034C11.30 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DZPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os11g0283500 protein (POT family protein, expressed) (cDNA clone:J033023F23, full insert sequence),Os11g0282800 protein (POT family protein, expressed),Os11g0284300 protein,Os11g0284032 protein Q2R726,Q2R733,A0A0P0Y1S1,A0A0N7KSS2 Q2R726_ORYSJ,Q2R733_ORYSJ,A0A0P0Y1S1_ORYSJ,A0A0N7KSS2_ORYSJ Os11g0283500 LOC_Os11g18044 Os11g0283500 OSNPB_110283500,Os11g0282800 LOC_Os11g17970 OSNPB_110282800,Os11g0284300 OSNPB_110284300,Os11g0284032 OSNPB_110284032 ENOG411DZPP FOLT1 Q7XA87 FOLT1_ARATH Folate transporter 1, chloroplastic (AtFOLT1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16055441}. FUNCTION: Mediates folate import into chloroplast. {ECO:0000269|PubMed:16055441}. MISCELLANEOUS: Appears to be a chloroplast envelope-located membrane protein lacking an N-terminal-located transit peptide. R-ATH-196757; 34119 Folate transporter 1, chloroplastic (AtFOLT1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; FAD transmembrane transporter activity [GO:0015230]; mitochondrial transport [GO:0006839] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:16055441}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16055441}. locus:2154910; AT5G66380 folate transporter Mitochondrial carrier protein, expressed (Mitochondrial carrier protein-like protein) (Os03g0734700 protein) (cDNA clone:J013110F19, full insert sequence) (cDNA clone:J013128I06, full insert sequence) Q6AVS9 Q6AVS9_ORYSJ OSJNBa0027J18.11 LOC_Os03g52430 Os03g0734700 OSNPB_030734700 ENOG411DZPQ CPSF100 Q9LKF9 CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2 (Cleavage and polyadenylation specificity factor 100 kDa subunit) (AtCPSF100) (CPSF 100 kDa subunit) (Protein EMBRYO DEFECTIVE 1265) (Protein ENHANCED SILENCING PHENOTYPE 5) DISRUPTION PHENOTYPE: Impaired antisense-RNA-mediated gene silencing. Early flowering. {ECO:0000269|PubMed:17008405}. Early flowering normal stature and leaf morphology.,Two- to three-fold fewer of the endogenous PDS mRNA than in the wild-type plants and 10- to 50-fold higher levels of PDS siRNA. Null: Embryo defective; Preglobular / Globular; Knockdown: Early flowering-D. Meinke-2002 FUNCTION: CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Required for antisense-RNA-mediated gene silencing (PubMed:17008405). {ECO:0000250|UniProtKB:O17403, ECO:0000269|PubMed:17008405}. R-ATH-72163;R-ATH-77595; 82139 Cleavage and polyadenylation specificity factor subunit 2 (Cleavage and polyadenylation specificity factor 100 kDa subunit) (AtCPSF100) (CPSF 100 kDa subunit) (Protein EMBRYO DEFECTIVE 1265) (Protein ENHANCED SILENCING PHENOTYPE 5) cytoplasm [GO:0005737]; mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; posttranscriptional gene silencing by RNA [GO:0035194] locus:2172843; AT5G23880 cleavage and polyadenylation specificity factor Cleavage and polyadenylation specificity factor subunit 2 (Cleavage and polyadenylation specificity factor 100 kDa subunit) (CPSF 100 kDa subunit) Q652P4 CPSF2_ORYSJ Os09g0569400 LOC_Os09g39590 OJ1003_C09.22 FUNCTION: CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. {ECO:0000250}. ENOG411DZPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411DZPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity) NA NA NA NA NA NA NA ENOG411DZPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCAMP family Secretory carrier-associated membrane protein 3 (Secretory carrier membrane protein 3) Q60EA5 SCAM3_ORYSJ SCAMP3 Os05g0503000 LOC_Os05g42330 OsJ_19111 OSJNBa0017K09.16 OSJNBb0048K05.1 FUNCTION: Probably involved in membrane trafficking. {ECO:0000250}. ENOG411DZPU F26K9_60 Q9LZK2 Q9LZK2_ARATH Stress response NST1-like protein (DUF1645) (Uncharacterized protein At3g62630) (Uncharacterized protein F26K9_60) 41871 Stress response NST1-like protein (DUF1645) (Uncharacterized protein At3g62630) (Uncharacterized protein F26K9_60) locus:2081610; AT3G62630 expressed protein Expressed protein (Os03g0303100 protein) (cDNA clone:J023081F02, full insert sequence) Q10MM4 Q10MM4_ORYSJ Os03g0303100 LOC_Os03g19090 Os03g0303100 OSNPB_030303100 ENOG411DZPZ Q9ASY2,A0A1P8BDH1 Q9ASY2_ARATH,A0A1P8BDH1_ARATH AT5g53310/K19E1_11 (Myosin heavy chain-like protein),Myosin heavy chain-like protein 23880,21297 AT5g53310/K19E1_11 (Myosin heavy chain-like protein),Myosin heavy chain-like protein myosin complex [GO:0016459]; plasma membrane [GO:0005886]; motor activity [GO:0003774],myosin complex [GO:0016459]; motor activity [GO:0003774] locus:2154217; AT5G53310 myosin ID heavy chain-like Os01g0621700 protein (Putative myosin heavy chain-related) Q5ZE75 Q5ZE75_ORYSJ Os01g0621700 Os01g0621700 OsJ_02648 OSNPB_010621700 P0501G01.3 ENOG411DZPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Converts alpha-aldose to the beta-anomer. It is active on D-glucose L-arabinose D-xylose D-galactose maltose and lactose (By similarity) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase) A0A0P0WBB6 A0A0P0WBB6_ORYSJ Os04g0458600 OSNPB_040458600 FUNCTION: Converts alpha-aldose to the beta-anomer. {ECO:0000256|PIRNR:PIRNR005096}. ENOG411DZPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch repeat-containing F-box family protein Kelch repeat-containing F-box family protein, putative, expressed (Os03g0171600 protein) (cDNA clone:006-303-E07, full insert sequence) (cDNA clone:J023139I09, full insert sequence),Os03g0171600 protein (Fragment) Q10R48,A0A0N7KGN8 Q10R48_ORYSJ,A0A0N7KGN8_ORYSJ LOC_Os03g07530 Os03g0171600 OsJ_09589 OSNPB_030171600,Os03g0171600 OSNPB_030171600 ENOG411DZP2 PER27 Q43735 PER27_ARATH Peroxidase 27 (Atperox P27) (EC 1.11.1.7) (ATP12a) (PRXR7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT3G01190-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34950 Peroxidase 27 (Atperox P27) (EC 1.11.1.7) (ATP12a) (PRXR7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in the whole plant, but preferentially in roots and flowers. {ECO:0000269|PubMed:9807821, ECO:0000269|Ref.9}. locus:2102087; AT3G01190 peroxidase NA NA NA NA NA NA NA ENOG411DZP3 ASY3 Q0WR66,A0A1P8B080,A0A1P8B0A5,F4IK49,A0A1P8B0A4 ASY3_ARATH,A0A1P8B080_ARATH,A0A1P8B0A5_ARATH,F4IK49_ARATH,A0A1P8B0A4_ARATH Meiosis-specific protein ASY3 (Protein ASYNAPTIC 3) (AtASY3),Asynaptic protein FUNCTION: Required for normal meiosis in male and female gametophytes. Acts with ASY1 at the interface between the developing chromosome axes and the recombination machinery to ensure interhomolog recombination. Required for synaptonemal complex formation during meiosis. {ECO:0000269|PubMed:22319460}. 87996,79537,86380,87654,84384 Meiosis-specific protein ASY3 (Protein ASYNAPTIC 3) (AtASY3),Asynaptic protein chromosome [GO:0005694]; nucleolus [GO:0005730]; meiotic cell cycle [GO:0051321]; regulation of synaptonemal complex assembly [GO:0090173] locus:2041334; AT2G46980 NA NA NA NA NA NA NA NA ENOG411DZP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain Os01g0926800 protein (Sec14 like protein) Q8S1X5 Q8S1X5_ORYSJ P0482D04.19 Os01g0926800 OSJNBa0093F16.23 OSNPB_010926800 ENOG411DZP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os10g0163040 protein),Os06g0499400 protein,Os06g0330100 protein Q10A41,A0A0P0WXD3,A0A0P0WWC3 Q10A41_ORYSJ,A0A0P0WXD3_ORYSJ,A0A0P0WWC3_ORYSJ Os10g0163040 LOC_Os10g07978 OsJ_07739 OSNPB_100163040,Os06g0499400 OSNPB_060499400,Os06g0330100 OSNPB_060330100 ENOG411DZP6 MES10 Q8S9K8 MES10_ARATH Methylesterase 10 (AtMES10) (EC 3.1.1.-) FUNCTION: Methylesterase shown to have methyl jasmonate (MeJA) esterase activity in vitro. {ECO:0000269|PubMed:18467465}. ARA:AT3G50440-MONOMER; 3.1.1.- 31358 Methylesterase 10 (AtMES10) (EC 3.1.1.-) hydrolase activity, acting on ester bonds [GO:0016788]; methyl jasmonate esterase activity [GO:0080032] locus:2098685; AT3G50440 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411DZP7 A0A1P8BGH6,F4K8L2 A0A1P8BGH6_ARATH,F4K8L2_ARATH Alpha/beta-Hydrolases superfamily protein 39927,49736 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042],plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] locus:2151769; AT5G37710 calmodulin-binding heat-shock protein NA NA NA NA NA NA NA ENOG411DZP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, expressed (Os03g0178400 protein) (cDNA clone:002-141-A10, full insert sequence) Q8H025 Q8H025_ORYSJ OSJNBa0050H14.5 LOC_Os03g08100 Os03g0178400 OSNPB_030178400 ENOG411DZP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-binding cassette transporter subfamily D member NA NA NA NA NA NA NA ENOG411DZP8 O48768,F4IUT0 O48768_ARATH,F4IUT0_ARATH Expressed protein (G1/S-specific cyclin-E protein) (Uncharacterized protein At2g32970),G1/S-specific cyclin-E protein 66474,79467 Expressed protein (G1/S-specific cyclin-E protein) (Uncharacterized protein At2g32970),G1/S-specific cyclin-E protein integral component of membrane [GO:0016021] locus:2059401; AT2G32970 NA (Rice Genome Annotation Project) expressed protein (Os02g0771800 protein) B7FAJ2 B7FAJ2_ORYSJ Os02g0771800 OsJ_08545 OSNPB_020771800 ENOG411EJC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E2QK Q0WWX8,Q93WJ5,A0A1P8AWL5,F4I1E4 Q0WWX8_ARATH,Q93WJ5_ARATH,A0A1P8AWL5_ARATH,F4I1E4_ARATH E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) (Uncharacterized protein At1g22510),E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) (Uncharacterized protein At1g72175),E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) 20780,20920,17169,22788 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) (Uncharacterized protein At1g22510),E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) (Uncharacterized protein At1g72175),E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) integral component of membrane [GO:0016021]; ligase activity [GO:0016874],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ligase activity [GO:0016874] locus:505006218;,locus:2009517; AT1G22510,AT1G72175 RING finger protein Os03g0839000 protein (Zinc finger family protein, putative, expressed) (cDNA clone:J023041E24, full insert sequence) Q851N4 Q851N4_ORYSJ OSJNBa0042I09.10 LOC_Os03g62250 Os03g0839000 OsJ_13296 OSNPB_030839000 ENOG411E5P3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQ2N ADPG2,ADPG1,QRT2 Q8RY29,O23147,Q9SFB7,Q9CAL5,A0A1P8AMU9,F4I671,F4I672 ADPG2_ARATH,ADPG1_ARATH,QRT2_ARATH,Q9CAL5_ARATH,A0A1P8AMU9_ARATH,F4I671_ARATH,F4I672_ARATH Polygalacturonase ADPG2 (AtADPG2) (PG ADPG2) (EC 3.2.1.15) (Pectinase ADPG2) (Protein ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2),Polygalacturonase ADPG1 (AtADPG1) (PG ADPG1) (EC 3.2.1.15) (Pectinase ADPG1) (Protein ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1),Polygalacturonase QRT2 (AtQRT2) (PG QRT2) (EC 3.2.1.15) (Pectinase QRT2) (Protein QUARTET 2),Pectin lyase-like superfamily protein (Putative polygalacturonase; 18642-16492),Pectin lyase-like superfamily protein,PPR superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Small delay in floral organ shedding. {ECO:0000269|PubMed:17928369, ECO:0000269|PubMed:19168715}.,DISRUPTION PHENOTYPE: Impaired pod shatter. {ECO:0000269|PubMed:19168715}.,DISRUPTION PHENOTYPE: The mature pollen grains are arranged in a tetrad. No visible phenotype regarding floral organ abscission. {ECO:0000269|PubMed:19168715, ECO:0000269|Ref.4}. Indehiscent siliques.,Reduced seed set. Indehiscent anthers. Reduced silique shattering under drought-S. Swain-2009,Reduced silique shattering-S. Swain-2009,Tetrad pollen-S. Swain-2009 FUNCTION: Polygalacturonase involved in cell separation in the final stages of pod shatter, in anther dehiscence and in floral organ abscission. {ECO:0000269|PubMed:17928369, ECO:0000269|PubMed:19168715}.,FUNCTION: Polygalacturonase involved in cell separation in the final stages of pod shatter and in anther dehiscence. Not involved in floral organ abscission. {ECO:0000269|PubMed:17928369, ECO:0000269|PubMed:19168715}.,FUNCTION: Polygalacturonase required for cell type-specific pectin degradation to separate microspores. Involved in anther dehiscence and floral organ abscission. {ECO:0000269|PubMed:17928369, ECO:0000269|PubMed:19168715, ECO:0000269|PubMed:8197459}. ARA:AT2G41850-MONOMER;,ARA:AT3G57510-MONOMER;,ARA:AT3G07970-MONOMER;,ARA:AT1G70500-MONOMER; 3.2.1.15 46623,46572,48572,50900,47050,42597,49571 Polygalacturonase ADPG2 (AtADPG2) (PG ADPG2) (EC 3.2.1.15) (Pectinase ADPG2) (Protein ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2),Polygalacturonase ADPG1 (AtADPG1) (PG ADPG1) (EC 3.2.1.15) (Pectinase ADPG1) (Protein ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1),Polygalacturonase QRT2 (AtQRT2) (PG QRT2) (EC 3.2.1.15) (Pectinase QRT2) (Protein QUARTET 2),Pectin lyase-like superfamily protein (Putative polygalacturonase; 18642-16492),Pectin lyase-like superfamily protein,PPR superfamily protein cell wall [GO:0005618]; extracellular region [GO:0005576]; polygalacturonase activity [GO:0004650]; anther dehiscence [GO:0009901]; carbohydrate metabolic process [GO:0005975]; cell wall modification involved in abscission [GO:0009830]; floral organ abscission [GO:0010227]; fruit dehiscence [GO:0010047],cell wall [GO:0005618]; cytoplasm [GO:0005737]; extracellular region [GO:0005576]; polygalacturonase activity [GO:0004650]; anther dehiscence [GO:0009901]; carbohydrate metabolic process [GO:0005975]; cell wall modification involved in abscission [GO:0009830]; fruit dehiscence [GO:0010047],cell wall [GO:0005618]; extracellular region [GO:0005576]; polygalacturonase activity [GO:0004650]; anther dehiscence [GO:0009901]; cell wall modification involved in abscission [GO:0009830]; fruit dehiscence [GO:0010047]; pectin catabolic process [GO:0045490]; pollen sperm cell differentiation [GO:0048235],extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] TISSUE SPECIFICITY: Expressed in roots and in the abscission zone of the sepals, petals and stamens of flowers, at the base of cauline leaves and in the basal cell of trichomes from senescing leaves. Found at the site of lateral root emergence, in the dehiscence zone of anthers and maturing siliques. Also expressed early in anther development, at the time of microspore separation. Expressed in germinating seeds, at the point at which the radicle broke through the seed coat. Not expressed at the junction between the seed and the funiculus or in the dehiscence zone of anthers or pods. {ECO:0000269|PubMed:11842157, ECO:0000269|PubMed:17010199, ECO:0000269|PubMed:17928369, ECO:0000269|PubMed:19168715}.,TISSUE SPECIFICITY: Expressed in flower buds and siliques, in the dehiscence zone of anthers (stomium cells) and maturing siliques. Expressed in stigma during pollen tube growth. Not expressed in seeds or in the floral part or leaf abscission zone but found at the junction between the seed and the funiculus at the site of seed abscission. {ECO:0000269|PubMed:11485203, ECO:0000269|PubMed:17010199, ECO:0000269|PubMed:17928369, ECO:0000269|PubMed:19168715, ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Expressed predominantly in roots with lower expression levels in rosette leaves, flower buds and siliques. Bearly detected in seeds. Found in flowers undergoing floral organ abscission. Also expressed early in anther development, at the time of microspore separation. {ECO:0000269|PubMed:17010199, ECO:0000269|PubMed:17928369, ECO:0000269|PubMed:19168715, ECO:0000269|Ref.4}. locus:2054396;,locus:2103478;,locus:2077407;,locus:2026795;,locus:2028850;,locus:2028844; AT2G41850,AT3G57510,AT3G07970,AT1G70500,AT1G23450,AT1G23460 polygalacturonase Os02g0130200 protein (cDNA clone:002-116-B12, full insert sequence),Os07g0208200 protein (Putative polygalacturonase PG1),Os03g0808000 protein,Os07g0207600 protein,Os07g0207800 protein (Fragment),Os07g0208100 protein (Fragment) Q0E491,Q84ZN9,A0A0P0W527,A0A0N7KN41,A0A0P0X3K6,A0A0P0X3T1 Q0E491_ORYSJ,Q84ZN9_ORYSJ,A0A0P0W527_ORYSJ,A0A0N7KN41_ORYSJ,A0A0P0X3K6_ORYSJ,A0A0P0X3T1_ORYSJ Os02g0130200 Os02g0130200 OSNPB_020130200,OJ1559_F09.112 Os07g0208200 OJ1136_A05.2 OsJ_23515 OSNPB_070208200,Os03g0808000 OSNPB_030808000,Os07g0207600 OSNPB_070207600,Os07g0207800 OSNPB_070207800,Os07g0208100 OSNPB_070208100 ENOG411DQ2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 31 Alpha-glucosidase-like (Os01g0268500 protein) (Os01g0268600 protein) Q5NBJ1 Q5NBJ1_ORYSJ Os01g0268600 Os01g0268500 OSNPB_010268600 P0011D01.29 P0667A10.3 ENOG411DQ2H GAUT4 Q93ZX7 GAUT4_ARATH Probable galacturonosyltransferase 4 (EC 2.4.1.-) (Like glycosyl transferase 3) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 71149 Probable galacturonosyltransferase 4 (EC 2.4.1.-) (Like glycosyl transferase 3) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:2160957; AT5G47780 Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-) Q7F1F3 Q7F1F3_ORYSJ OJ1136_A10.122 Os08g0327100 OsJ_26894 OSNPB_080327100 P0670E08.9 ENOG411DQ2G NSF Q9M0Y8 NSF_ARATH Vesicle-fusing ATPase (EC 3.6.4.6) (N-ethylmaleimide-sensitive fusion protein) (Vesicular-fusion protein NSF) FUNCTION: Involved in vesicle-mediated transport. The ATPase activity of NSF serves to disassemble the SNARE complex, freeing the components for subsequent pairing and fusion events. ARA:AT4G04910-MONOMER; R-ATH-204005;R-ATH-6807878;R-ATH-6811438;R-ATH-6811440; 3.6.4.6 81487 Vesicle-fusing ATPase (EC 3.6.4.6) (N-ethylmaleimide-sensitive fusion protein) (Vesicular-fusion protein NSF) Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2135378; AT4G04910 Vesicle-fusing Os05g0519400 protein (Putative N-ethylmaleimide sensitive fusion protein) (cDNA clone:J023146P19, full insert sequence),Os05g0519400 protein (Fragment) Q65X08,A0A0P0WPN5,A0A0P0WPI9 Q65X08_ORYSJ,A0A0P0WPN5_ORYSJ,A0A0P0WPI9_ORYSJ Os05g0519400 Os05g0519400 OsJ_19229 OSNPB_050519400 P0599F04.10,Os05g0519400 OSNPB_050519400 ENOG411DQ2F MAC12.31 A0A1P8BHD4,Q0WSL5,A0A1P8BHC4 A0A1P8BHD4_ARATH,Q0WSL5_ARATH,A0A1P8BHC4_ARATH Endosomal targeting BRO1-like domain-containing protein,Endosomal targeting BRO1-like domain-containing protein (Uncharacterized protein At5g14020) 32525,44473,38485 Endosomal targeting BRO1-like domain-containing protein,Endosomal targeting BRO1-like domain-containing protein (Uncharacterized protein At5g14020) vacuole [GO:0005773] locus:2159103; AT5G14020 BRO1-like domain Expressed protein (Os11g0514800 protein) (cDNA clone:001-124-H08, full insert sequence) (cDNA clone:J033070C22, full insert sequence) Q2R3L0 Q2R3L0_ORYSJ Os11g0514800 LOC_Os11g31570 Os11g0514800 OsJ_34037 OSNPB_110514800 ENOG411DQ2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0951500 protein (Putative cytochrome P450-dependent fatty acid hydroxylase) Q5JKW8 Q5JKW8_ORYSJ Os01g0951500 Os01g0951500 B1147A04.40 OSNPB_010951500 ENOG411DQ2D SPT5-1 Q9STN3,O80770,Q9STN2,A0A1P8AZ96 SPT51_ARATH,SPT52_ARATH,Q9STN2_ARATH,A0A1P8AZ96_ARATH Putative transcription elongation factor SPT5 homolog 1,Putative transcription elongation factor SPT5 homolog 2,KOW domain-containing protein (Uncharacterized protein At4g08360) (Uncharacterized protein T28D5.50),Transcription elongation factor SPT5 FUNCTION: May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity). {ECO:0000250}. R-ATH-113418;R-ATH-674695;R-ATH-6796648;R-ATH-72086;R-ATH-77075; 115405,110277,15189,108881 Putative transcription elongation factor SPT5 homolog 1,Putative transcription elongation factor SPT5 homolog 2,KOW domain-containing protein (Uncharacterized protein At4g08360) (Uncharacterized protein T28D5.50),Transcription elongation factor SPT5 DSIF complex [GO:0032044]; ribosome [GO:0005840]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mRNA processing [GO:0006397]; regulation of DNA-templated transcription, elongation [GO:0032784]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription elongation from RNA polymerase II promoter [GO:0006368]; translation [GO:0006412],nucleus [GO:0005634]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation elongation factor activity [GO:0003746]; regulation of DNA-templated transcription, elongation [GO:0032784]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] locus:2137415;,locus:2040954;,locus:2137420; AT4G08350,AT2G34210,AT4G08360 transcription elongation factor SPT5 homolog Os06g0208300 protein (Transcription factor) (Transcription factor-like),Os02g0772000 protein Q69T55,A0A0P0VPZ7 Q69T55_ORYSJ,A0A0P0VPZ7_ORYSJ Os06g0208300 OSNPB_060208300 P0664C05.20,Os02g0772000 OSNPB_020772000 ENOG411DQ2C BSK2,BSK5,F5K20_330 Q9LS26,Q9FIL1,Q9M324,F4JPT1,A8MQ88 Q9LS26_ARATH,Q9FIL1_ARATH,Q9M324_ARATH,F4JPT1_ARATH,A8MQ88_ARATH At5g46570 (BR-signaling kinase 2) (Protein kinase-like protein),AT5g59010/k19m22_210 (At5g59010) (Kinase with tetratricopeptide repeat domain-containing protein) (Protein kinase-like protein),Kinase with tetratricopeptide repeat domain-containing protein (Protein kinase-like protein),Interleukin-1 receptor-associated kinase 4 protein,Kinase with tetratricopeptide repeat domain-containing protein FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. Mediates signal transduction from BRI1 by functioning as substrate of BRI1. {ECO:0000269|PubMed:18653891}.,FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1 (PubMed:18653891). Involved in abiotic stress tolerance. Required for salt stress and abscisic acid-mediated drought stress tolerance (PubMed:22982312). {ECO:0000269|PubMed:18653891, ECO:0000269|PubMed:22982312}.,FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. Functions redundantly with BSK3, BSK4, BSK7 and BSK8. {ECO:0000269|PubMed:23496207}. 54973,54854,54789,17845,40133 At5g46570 (BR-signaling kinase 2) (Protein kinase-like protein),AT5g59010/k19m22_210 (At5g59010) (Kinase with tetratricopeptide repeat domain-containing protein) (Protein kinase-like protein),Kinase with tetratricopeptide repeat domain-containing protein (Protein kinase-like protein),Interleukin-1 receptor-associated kinase 4 protein,Kinase with tetratricopeptide repeat domain-containing protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2142315;,locus:2154538;,locus:2084475;,locus:4010713879; AT5G46570,AT5G59010,AT3G54030,AT4G11845 serine threonine-protein kinase Os10g0571300 protein (Protein kinase family protein, putative, expressed),Os03g0825300 protein (TPR-containing protein kinase, putative, expressed) (cDNA clone:J033103D19, full insert sequence),Os03g0825300 protein Q8S7N5,Q10BA8,Q0DM70 Q8S7N5_ORYSJ,Q10BA8_ORYSJ,Q0DM70_ORYSJ LOC_Os10g42110 Os10g0571300 OSJNBa0095C07.6 OSNPB_100571300,Os03g0825300 OJ1111_B11.20 LOC_Os03g61010 OsJ_13186 OSNPB_030825300,Os03g0825300 Os03g0825300 OSNPB_030825300 ENOG411DQ2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_18 Glycosyl hydrolases family 18 protein, expressed (Os11g0462100 protein) (cDNA clone:001-009-C12, full insert sequence) Q2R4T2 Q2R4T2_ORYSJ Os11g0462100 LOC_Os11g27400 Os11g0462100 OsJ_21271 OSNPB_110462100 ENOG411DQ2A Q94K61 Q94K61_ARATH CAAX amino terminal protease family protein (Predicted protein) (Uncharacterized protein At2g20725) (Uncharacterized protein At2g20725/F5H14.3) 33018 CAAX amino terminal protease family protein (Predicted protein) (Uncharacterized protein At2g20725) (Uncharacterized protein At2g20725/F5H14.3) integral component of membrane [GO:0016021]; peptidase activity [GO:0008233] locus:2827507; AT2G20725 CAAX amino terminal protease family protein Os07g0457550 protein A0A0P0X5J4 A0A0P0X5J4_ORYSJ Os07g0457550 OSNPB_070457550 ENOG411DQ2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein OSJNBa0043L24.22 protein (Os04g0508800 protein),Os02g0619600 protein (Zinc finger (C3HC4-type RING finger)-like protein) (cDNA clone:J013145E21, full insert sequence) Q7XM95,Q6K937 Q7XM95_ORYSJ,Q6K937_ORYSJ Os04g0508800 Os04g0508800 OsJ_15416 OSJNBa0043L24.22 OSNPB_040508800,Os02g0619600 Os02g0619600 OJ1212_C01.33 OJ1372_D06.16 OsJ_07557 OSNPB_020619600 ENOG411DQ2Y BGLU46,BGLU45 O80690,O80689,A0A1P8ATH9,A0A1P8ATI0,F4HVG2,F4HVG4,F4HVG0 BGL46_ARATH,BGL45_ARATH,A0A1P8ATH9_ARATH,A0A1P8ATI0_ARATH,F4HVG2_ARATH,F4HVG4_ARATH,F4HVG0_ARATH Beta-glucosidase 46 (AtBGLU46) (EC 3.2.1.21),Beta-glucosidase 45 (AtBGLU45) (EC 3.2.1.21),Beta-glucosidase 45,Beta glucosidase 46 FUNCTION: Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-galactoside and natural glucosides such as salicin, p-coumaryl alcohol glucoside, phenyl-beta-D-glucoside, coniferin, syringin and arbutin. May be involved in lignification by hydrolyzing monolignol glucosides. {ECO:0000269|PubMed:16814332}.,FUNCTION: Hydrolyzes p-nitrophenyl beta-D-glucoside and natural glucosides such as syringin, coniferin and p-coumaryl alcohol glucoside. May be involved in lignification by hydrolyzing monolignol glucosides. {ECO:0000269|PubMed:16814332}. ARA:AT1G61820-MONOMER; R-ATH-189085; 3.2.1.21 59113,59897,48505,48555,35767,43479,62426 Beta-glucosidase 46 (AtBGLU46) (EC 3.2.1.21),Beta-glucosidase 45 (AtBGLU45) (EC 3.2.1.21),Beta-glucosidase 45,Beta glucosidase 46 beta-glucosidase activity [GO:0008422]; coniferin beta-glucosidase activity [GO:0047782]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657]; lignin biosynthetic process [GO:0009809],beta-glucosidase activity [GO:0008422]; coniferin beta-glucosidase activity [GO:0047782]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975]; lignin biosynthetic process [GO:0009809] TISSUE SPECIFICITY: Expressed in roots and stems. {ECO:0000269|PubMed:16814332}.,TISSUE SPECIFICITY: Expressed in stems and siliques. {ECO:0000269|PubMed:16814332}. locus:2036873;,locus:2036798; AT1G61820,AT1G61810 beta-glucosidase Putative beta-glucosidase 15 (Os4bglu15) (EC 3.2.1.21),Beta-glucosidase 16 (Os4bglu16) (EC 3.2.1.21),Beta-glucosidase 18 (Os4bglu18) (EC 3.2.1.21),Probable inactive beta-glucosidase 14 (Os4bglu14),Putative beta-glucosidase 17 (Os4bglu17) (EC 3.2.1.21),Os04g0513700 protein,Os04g0513900 protein (Fragment),Os04g0513400 protein Q7XPY5,Q7XSK2,Q7XSK0,Q7XPY7,Q7XSK1,A0A0P0WCJ2,A0A0P0WCH1,A0A0P0WC95,A0A0P0WCR8 BGL15_ORYSJ,BGL16_ORYSJ,BGL18_ORYSJ,BGL14_ORYSJ,BGL17_ORYSJ,A0A0P0WCJ2_ORYSJ,A0A0P0WCH1_ORYSJ,A0A0P0WC95_ORYSJ,A0A0P0WCR8_ORYSJ BGLU15 Os04g0513300 LOC_Os04g43380 OSJNBa0004N05.23,BGLU16 Os04g0513400 LOC_Os04g43390 OSJNBa0004N05.24 OSJNBb0070J16.1,BGLU18 Os04g0513900 LOC_Os04g43410 OSJNBa0004N05.26 OSJNBb0070J16.3,BGLU14 Os04g0513100 LOC_Os04g43360 OSJNBa0004N05.21,BGLU17 Os04g0513700 LOC_Os04g43400 OSJNBa0004N05.25 OSJNBb0070J16.2,Os04g0513700 OSNPB_040513700,Os04g0513900 OSNPB_040513900,Os04g0513400 OSNPB_040513400 ENOG411DQ2X D27 Q7XA78,F4HZB1 D27_ARATH,F4HZB1_ARATH Beta-carotene isomerase D27, chloroplastic (EC 5.2.1.14) (Protein DWARF-27 homolog) (AtD27),Beta-carotene isomerase D27-like protein DISRUPTION PHENOTYPE: Increased shoot branching. {ECO:0000269|PubMed:22623516}. FUNCTION: Involved in strigolactones biosynthesis by catalyzing the isomerization of the C9-C10 double bond in all-trans-beta-carotene leading to 9-cis-beta-carotene and providing the substrate for CCD7. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds. {ECO:0000269|PubMed:22422982, ECO:0000269|PubMed:22623516}. 5.2.1.14 29795,22371 Beta-carotene isomerase D27, chloroplastic (EC 5.2.1.14) (Protein DWARF-27 homolog) (AtD27),Beta-carotene isomerase D27-like protein chloroplast [GO:0009507]; plastid [GO:0009536]; cis-trans isomerase activity [GO:0016859]; iron ion binding [GO:0005506]; secondary shoot formation [GO:0010223]; strigolactone biosynthetic process [GO:1901601],isomerase activity [GO:0016853] TISSUE SPECIFICITY: Expressed in hypocotyls and shoots. Expressed at low levels in roots. {ECO:0000269|PubMed:22623516}. locus:505006097; AT1G03055 NA Beta-carotene isomerase D27, chloroplastic (EC 5.2.1.14) (Protein DWARF-27) C7AU21 D27_ORYSJ D27 Os11g0587000 LOC_Os11g37650 DISRUPTION PHENOTYPE: Increased tillers and reduced plant height, reduced levels of strigolactone. {ECO:0000269|PubMed:15659436, ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:19470589}. FUNCTION: Involved in strigolactones biosynthesis by catalyzing the isomerization of the C9-C10 double bond in all-trans-beta-carotene leading to 9-cis-beta-carotene and providing the substrate for CCD7. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds. {ECO:0000269|PubMed:19470589, ECO:0000269|PubMed:22422982}. MISCELLANEOUS: Recombinant D27 protein expressed in E.coli contains about 1.7 mole of iron per mole of protein. {ECO:0000305|PubMed:19470589}. ENOG411DQ2W F4K465 F4K465_ARATH Nucleoporin-like protein 81685 Nucleoporin-like protein locus:2149184; AT5G20200 NA Os06g0606900 protein (Fragment) A0A0P0WYM2 A0A0P0WYM2_ORYSJ Os06g0606900 OSNPB_060606900 ENOG411DQ2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARM Os01g0524700 protein (cDNA clone:001-123-H08, full insert sequence) Q5QL78 Q5QL78_ORYSJ Os01g0524700 B1249E06.25 OSNPB_010524700 ENOG411DQ2U TNO1 F4I9A2,F4I9A1 F4I9A2_ARATH,F4I9A1_ARATH TGN-related, localized SYP41 interacting protein 193591,202121 TGN-related, localized SYP41 interacting protein trans-Golgi network membrane [GO:0032588]; response to salt stress [GO:0009651]; vacuolar transport [GO:0007034] locus:2825102; AT1G24460 NA Os02g0598300 protein Q0DZU3 Q0DZU3_ORYSJ Os02g0598300 Os02g0598300 OSNPB_020598300 ENOG411DQ2T Q6NKW9,Q9ZUP5 E138_ARATH,Q9ZUP5_ARATH Glucan endo-1,3-beta-glucosidase 8 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 8) ((1->3)-beta-glucanase 8) (Beta-1,3-endoglucanase 8) (Beta-1,3-glucanase 8),O-Glycosyl hydrolases family 17 protein (Putative beta-1,3-glucanase) ARA:AT1G64760-MONOMER;,ARA:AT2G19440-MONOMER; 3.2.1.39 52281,52014 Glucan endo-1,3-beta-glucosidase 8 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 8) ((1->3)-beta-glucanase 8) (Beta-1,3-endoglucanase 8) (Beta-1,3-glucanase 8),O-Glycosyl hydrolases family 17 protein (Putative beta-1,3-glucanase) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; defense response [GO:0006952],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2010916;,locus:2047650; AT1G64760,AT2G19440 glucan endo-1-3-beta-glucosidase Glucan endo-1,3-beta-glucosidase 5, putative, expressed (Os03g0792800 protein) (Putative beta-1,3 glucanase) (cDNA, clone: J090078D21, full insert sequence),Os07g0168600 protein (Putative 3-glucanase) (cDNA clone:001-200-H12, full insert sequence),Glucan endo-1,3-beta-glucosidase 5, putative, expressed (Os03g0656800 protein) (Putative beta-1,3-glucanase) (cDNA clone:J023019N22, full insert sequence),Os03g0656800 protein Q852K4,Q69LE4,Q7Y090,A0A0P0W1N6 Q852K4_ORYSJ,Q69LE4_ORYSJ,Q7Y090_ORYSJ,A0A0P0W1N6_ORYSJ OSJNBb0060J21.19 Os03g0792800 LOC_Os03g57880 OsJ_12912 OSNPB_030792800,Os07g0168600 OsJ_23232 OSJNBa0050F10.9 OSNPB_070168600,OSJNBa0075A22.22 LOC_Os03g45390 Os03g0656800 OsJ_11963 OSNPB_030656800,Os03g0656800 OSNPB_030656800 ENOG411DQ2S MNC6.16 Q93XY1 Q93XY1_ARATH At5g53620 (RNA polymerase II degradation factor) (Uncharacterized protein At5g53620; MNC6.16) 76317 At5g53620 (RNA polymerase II degradation factor) (Uncharacterized protein At5g53620; MNC6.16) cytosol [GO:0005829] locus:2168641; AT5G53620 NA Os08g0543600 protein (cDNA clone:J013072L17, full insert sequence),Os08g0543600 protein (Fragment) Q6ZBI5,A0A0P0XI54 Q6ZBI5_ORYSJ,A0A0P0XI54_ORYSJ Os08g0543600 Os08g0543600 OJ1521_G02.33 OSNPB_080543600 P0623F08.8,Os08g0543600 OSNPB_080543600 ENOG411DQ2R RBL1,RBL2,RBL3,RBL6 Q0WQX7,Q9CAN1,Q9LYP1,Q8VZ48,A0A1P8AUJ6 RBL1_ARATH,RBL2_ARATH,RBL3_ARATH,RBL6_ARATH,A0A1P8AUJ6_ARATH RHOMBOID-like protein 1 (AtRBL1) (EC 3.4.21.-),RHOMBOID-like protein 2 (AtRBL2) (EC 3.4.21.105),RHOMBOID-like protein 3 (AtRBL3) (EC 3.4.21.-),RHOMBOID-like protein 6, mitochondrial (AtRBL6) (EC 3.4.21.-),Rhomboid-like protein (EC 3.4.21.-) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000305|PubMed:16223493}. FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. Unable to cleave the Drosophila protein Spitz. {ECO:0000269|PubMed:16223493}.,FUNCTION: Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Can cleave the Drosophila proteins Spitz and Keren (PubMed:16223493). May function in pollen elongation (PubMed:22007993). {ECO:0000269|PubMed:16223493, ECO:0000303|PubMed:22007993}.,FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:22007993}.,FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. Might be involved in response to abiotic stimuli. {ECO:0000303|PubMed:22007993}. 3.4.21.-,3.4.21.105 43360,35413,38491,34289,23554 RHOMBOID-like protein 1 (AtRBL1) (EC 3.4.21.-),RHOMBOID-like protein 2 (AtRBL2) (EC 3.4.21.105),RHOMBOID-like protein 3 (AtRBL3) (EC 3.4.21.-),RHOMBOID-like protein 6, mitochondrial (AtRBL6) (EC 3.4.21.-),Rhomboid-like protein (EC 3.4.21.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; serine-type endopeptidase activity [GO:0004252],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; serine-type endopeptidase activity [GO:0004252],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; serine-type endopeptidase activity [GO:0004252],integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Expressed in roots, seedlings, leaves, stems and flowers. {ECO:0000269|PubMed:16223493}. locus:2066102;,locus:2015193;,locus:2182925;,locus:2195067; AT2G29050,AT1G63120,AT5G07250,AT1G12750 inactive rhomboid protein 1-like Rhomboid-like protein (EC 3.4.21.-) Q10SN4,B7F9A1,Q53MA5,A0A0N7KS35 Q10SN4_ORYSJ,B7F9A1_ORYSJ,Q53MA5_ORYSJ,A0A0N7KS35_ORYSJ LOC_Os03g02530 Os03g0116400 OsJ_09173 OSNPB_030116400,Os01g0147300 OSNPB_010147300,LOC_Os11g47840 Os11g0704800 OSNPB_110704800,Os10g0521900 OSNPB_100521900 ENOG411DQ2Q RUP2 Q9FFA7 RUP2_ARATH WD repeat-containing protein RUP2 (Protein EARLY FLOWERING BY OVEREXPRESSION 2) (Protein EPRESSOR OF UV-B PHOTOMORPHOGENESIS 2) DISRUPTION PHENOTYPE: Small stunted leaves and early flowering under short days conditions. {ECO:0000269|PubMed:21242318}. Sensitive to UV-B light-R. Ulm-2010 FUNCTION: Functions in association with RUP1 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Plays a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development. May act as negative regulator of photoperiodic flowering by suppressing flowering through the action of CONSTANS (CO) and FLOWERING LOCUS T (FT). {ECO:0000269|PubMed:21041653, ECO:0000269|PubMed:21242318}. 40002 WD repeat-containing protein RUP2 (Protein EARLY FLOWERING BY OVEREXPRESSION 2) (Protein EPRESSOR OF UV-B PHOTOMORPHOGENESIS 2) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; nucleus [GO:0005634]; chloroplast organization [GO:0009658]; flower development [GO:0009908]; regulation of protein homodimerization activity [GO:0043496]; response to UV-B [GO:0010224] locus:2172883; AT5G23730 WD40 NA NA NA NA NA NA NA ENOG411DQ2P Q9LIL5 PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200 61079 Putative pentatricopeptide repeat-containing protein At3g15200 cytosolic ribosome [GO:0022626]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2083671; AT3G15200 Pentatricopeptide repeat-containing protein Os01g0151900 protein (cDNA, clone: J065206N09, full insert sequence) Q9LGI6 Q9LGI6_ORYSJ Os01g0151900 Os01g0151900 OSNPB_010151900 P0009G03.25 P0030H07.4 ENOG411DQ29 C7A10.570 O23203 O23203_ARATH Major facilitator superfamily protein (Uncharacterized protein At4g36790) (Uncharacterized protein C7A10.570) 52807 Major facilitator superfamily protein (Uncharacterized protein At4g36790) (Uncharacterized protein C7A10.570) integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2115430; AT4G36790 Major Facilitator Superfamily Expressed protein (Os03g0809100 protein) (Transporter, putative, expressed) (cDNA clone:J023049P03, full insert sequence),Os07g0208900 protein,Os07g0208900 protein (Fragment) Q6ATP9,A0A0P0X3I5,A0A0N7KN43 Q6ATP9_ORYSJ,A0A0P0X3I5_ORYSJ,A0A0N7KN43_ORYSJ OSJNBa0028F23.21 LOC_Os03g59450 Os03g0809100 OSNPB_030809100,Os07g0208900 OSNPB_070208900 ENOG411DQ27 PUR3 P52422 PUR3_ARATH Phosphoribosylglycinamide formyltransferase, chloroplastic (EC 2.1.2.2) (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (10-formyl THF route): step 1/1. ARA:AT1G31220-MONOMER; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),One carbon pool by folate (00670),Metabolic pathways (01100) 2.1.2.2 32170 Phosphoribosylglycinamide formyltransferase, chloroplastic (EC 2.1.2.2) (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) chloroplast [GO:0009507]; phosphoribosylglycinamide formyltransferase activity [GO:0004644]; 'de novo' IMP biosynthetic process [GO:0006189] locus:2029554; AT1G31220 phosphoribosylglycinamide formyltransferase Os08g0500900 protein (Putative phosphoribosylglycinamide formyltransferase, chloroplast) (cDNA clone:J033090F02, full insert sequence),Os05g0270800 protein,Os08g0501132 protein (Fragment) Q6ZK11,A0A0P0WK03,A0A0P0XHL9 Q6ZK11_ORYSJ,A0A0P0WK03_ORYSJ,A0A0P0XHL9_ORYSJ Os08g0500900 Os08g0500900 OJ1345_D02.7 OsJ_27836 OSNPB_080500900,Os05g0270800 OSNPB_050270800,Os08g0501132 OSNPB_080501132 ENOG411DQ26 MIOX4,MIOX1,MIOX2 Q8H1S0,Q8L799,O82200,A0A1P8APC9,F4HW72 MIOX4_ARATH,MIOX1_ARATH,MIOX2_ARATH,A0A1P8APC9_ARATH,F4HW72_ARATH Inositol oxygenase 4 (EC 1.13.99.1) (Myo-inositol oxygenase 4) (AtMIOX4) (MI oxygenase 4),Inositol oxygenase 1 (EC 1.13.99.1) (Myo-inositol oxygenase 1) (AtMIOX1) (MI oxygenase 1),Inositol oxygenase 2 (EC 1.13.99.1) (Myo-inositol oxygenase 2) (AtMIOX2) (MI oxygenase 2),Myo-inositol oxygenase 1 FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in plant ascorbate biosynthesis. {ECO:0000269|PubMed:14976233, ECO:0000269|PubMed:15660207}. PATHWAY: Polyol metabolism; myo-inositol degradation into D-glucuronate; D-glucuronate from myo-inositol: step 1/1. MetaCyc:AT1G14520-MONOMER; R-ATH-1855183; 1.13.99.1; 1.13.99.1 36904,36574,37048,39990,36388 Inositol oxygenase 4 (EC 1.13.99.1) (Myo-inositol oxygenase 4) (AtMIOX4) (MI oxygenase 4),Inositol oxygenase 1 (EC 1.13.99.1) (Myo-inositol oxygenase 1) (AtMIOX1) (MI oxygenase 1),Inositol oxygenase 2 (EC 1.13.99.1) (Myo-inositol oxygenase 2) (AtMIOX2) (MI oxygenase 2),Myo-inositol oxygenase 1 cytoplasm [GO:0005737]; inositol oxygenase activity [GO:0050113]; iron ion binding [GO:0005506]; inositol catabolic process [GO:0019310]; L-ascorbic acid biosynthetic process [GO:0019853],cytoplasm [GO:0005737]; inositol oxygenase activity [GO:0050113]; iron ion binding [GO:0005506]; inositol catabolic process [GO:0019310] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:15660207}.,TISSUE SPECIFICITY: Expressed in roots, young leaves, stems, flowers and siliques. {ECO:0000269|PubMed:15660207}.,TISSUE SPECIFICITY: Expressed mainly in roots, stems, flowers and siliques. Low expression in leaves. {ECO:0000269|PubMed:15660207}. locus:2136839;,locus:2012572;,locus:2052015; AT4G26260,AT1G14520,AT2G19800 inositol oxygenase Probable inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase) (MI oxygenase) Q5Z8T3 MIOX_ORYSJ Os06g0561000 LOC_Os06g36560 P0456F09.5 P0528E12.30 FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in plant ascorbate biosynthesis (By similarity). {ECO:0000250}. ENOG411DQ25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411DQ24 Q9FNM5,A0A1P8B9J8 GUFP_ARATH,A0A1P8B9J8_ARATH Translation factor GUF1 homolog, chloroplastic (EC 3.6.5.-) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase),Translation factor GUF1 homolog, mitochondrial (EC 3.6.5.n1) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase) FUNCTION: Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. {ECO:0000255|HAMAP-Rule:MF_03138}.,FUNCTION: Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. {ECO:0000256|HAMAP-Rule:MF_03137}. 3.6.5.-,3.6.5.n1 75437,67940 Translation factor GUF1 homolog, chloroplastic (EC 3.6.5.-) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase),Translation factor GUF1 homolog, mitochondrial (EC 3.6.5.n1) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase) chloroplast [GO:0009507]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein domain specific binding [GO:0019904]; translation [GO:0006412],mitochondrial inner membrane [GO:0005743]; mitochondrial matrix [GO:0005759]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome binding [GO:0043022]; positive regulation of translation [GO:0045727]; translation [GO:0006412] locus:2159572; AT5G08650 protein synthesis. May act as a fidelity factor of the translation reaction by catalyzing a one- codon backward translocation of tRNAs on improperly translocated ribosomes Translation factor GUF1 homolog, chloroplastic (EC 3.6.5.-) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase) B9F2U5 GUFP_ORYSJ Os02g0157700 LOC_Os02g06300 B1103G11.7 OsJ_05443 P0419H03.27 FUNCTION: Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. {ECO:0000255|HAMAP-Rule:MF_03138}. ENOG411DQ23 ACA2,ACA5,ACA7,ACA8 F4IHR4,F4HUC4,Q8L817,Q9FM99,A0A1P8BGF7,A0A1P8AXK4 ATCA2_ARATH,ATCA5_ARATH,ATCA7_ARATH,ATCA8_ARATH,A0A1P8BGF7_ARATH,A0A1P8AXK4_ARATH Alpha carbonic anhydrase 2 (AtaCA2) (AtalphaCA2) (EC 4.2.1.1) (Alpha carbonate dehydratase 2),Alpha carbonic anhydrase 5 (AtaCA5) (AtalphaCA5) (EC 4.2.1.1) (Alpha carbonate dehydratase 5),Alpha carbonic anhydrase 7 (AtaCA7) (AtalphaCA7) (EC 4.2.1.1) (Alpha carbonate dehydratase 7),Alpha carbonic anhydrase 8 (AtaCA8) (AtalphaCA8) (EC 4.2.1.1) (Alpha carbonate dehydratase 8),Alpha carbonic anhydrase 8,Alpha carbonic anhydrase 2 FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000250}. ARA:AT1G08080-MONOMER;,ARA:AT5G56330-MONOMER; R-ATH-1237044;R-ATH-1247673;R-ATH-1475029; 4.2.1.1 28362,32164,31620,42567,33276,18299 Alpha carbonic anhydrase 2 (AtaCA2) (AtalphaCA2) (EC 4.2.1.1) (Alpha carbonate dehydratase 2),Alpha carbonic anhydrase 5 (AtaCA5) (AtalphaCA5) (EC 4.2.1.1) (Alpha carbonate dehydratase 5),Alpha carbonic anhydrase 7 (AtaCA7) (AtalphaCA7) (EC 4.2.1.1) (Alpha carbonate dehydratase 7),Alpha carbonic anhydrase 8 (AtaCA8) (AtalphaCA8) (EC 4.2.1.1) (Alpha carbonate dehydratase 8),Alpha carbonic anhydrase 8,Alpha carbonic anhydrase 2 chloroplast stroma [GO:0009570]; membrane [GO:0016020]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; one-carbon metabolic process [GO:0006730]; response to carbon dioxide [GO:0010037],chloroplast stroma [GO:0009570]; carbonate dehydratase activity [GO:0004089]; metal ion binding [GO:0046872],chloroplast stroma [GO:0009570]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; one-carbon metabolic process [GO:0006730] TISSUE SPECIFICITY: Expressed in stems and roots. {ECO:0000269|PubMed:17407539}. locus:2062819;,locus:2827099;,locus:2205175;,locus:2161043; AT2G28210,AT1G08065,AT1G08080,AT5G56330 bifunctional monodehydroascorbate reductase and carbonic anhydrase Os08g0470200 protein (Putative dioscorin class A),Os08g0423500 protein (Putative dioscorin),Os08g0424100 protein,Os08g0423600 protein,Os08g0470200 protein Q6Z9S4,Q8GTK1,A0A0P0XFW7,A0A0P0XFX4,A0A0P0XHC5 Q6Z9S4_ORYSJ,Q8GTK1_ORYSJ,A0A0P0XFW7_ORYSJ,A0A0P0XFX4_ORYSJ,A0A0P0XHC5_ORYSJ P0461F06.11-1 Os08g0470200 OsJ_27633 OSNPB_080470200,Os08g0423500 Os08g0423500 OSJNBa0056L09.10 OSJNBa0077M12.138 OSNPB_080423500,Os08g0424100 OSNPB_080424100,Os08g0423600 OSNPB_080423600,Os08g0470200 OSNPB_080470200 ENOG411DQ22 PAH1,PAH2 Q9SF47,Q9FMN2,A0A1P8BB14,F4K347 PAH1_ARATH,PAH2_ARATH,A0A1P8BB14_ARATH,F4K347_ARATH Phosphatidate phosphatase PAH1 (EC 3.1.3.4) (Phosphatidic acid phosphohydrolase 1) (AtPAH1),Phosphatidate phosphatase PAH2 (EC 3.1.3.4) (Phosphatidic acid phosphohydrolase 2) (AtPAH2),Phosphatidic acid phosphohydrolase 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants pah1 and pah2-1 show reduced growth. {ECO:0000269|PubMed:19923426, ECO:0000269|PubMed:20699392}. FUNCTION: Magnesium-dependent phosphatidate phosphatase which catalyzes the dephosphorylation of phosphatidate to yield diacylglycerol. Acts redundantly with PAH2 to repress phospholipid biosynthesis at the endoplasmic reticulum (ER). May function indirectly as repressor of multiple enzymes involved in phospholipid biosynthesis. Is involved in the pathway of galactolipid synthesis in the ER, which is required for the membrane lipid remodeling, an essential adaptation mechanism to cope with phosphate starvation. {ECO:0000269|PubMed:19923426, ECO:0000269|PubMed:20699392, ECO:0000269|PubMed:21205207}.,FUNCTION: Magnesium-dependent phosphatidate phosphatase which catalyzes the dephosphorylation of phosphatidate to yield diacylglycerol. Acts redundantly with PAH1 to repress phospholipid biosynthesis at the endoplasmic reticulum (ER). May function indirectly as repressor of multiple enzymes involved in phospholipid biosynthesis. Is involved in the pathway of galactolipid synthesis in the ER, which is required for the membrane lipid remodeling, an essential adaptation mechanism to cope with phosphate starvation. {ECO:0000269|PubMed:19923426, ECO:0000269|PubMed:20699392, ECO:0000269|PubMed:21205207}. ARA:GQT-2138-MONOMER; R-ATH-1483191;R-ATH-1483213;R-ATH-4419969;R-ATH-75109; 3.1.3.4 101003,101218,96640,100704 Phosphatidate phosphatase PAH1 (EC 3.1.3.4) (Phosphatidic acid phosphohydrolase 1) (AtPAH1),Phosphatidate phosphatase PAH2 (EC 3.1.3.4) (Phosphatidic acid phosphohydrolase 2) (AtPAH2),Phosphatidic acid phosphohydrolase 2 cytosol [GO:0005829]; Golgi membrane [GO:0000139]; protein storage vacuole membrane [GO:0032586]; phosphatidate phosphatase activity [GO:0008195]; cellular response to phosphate starvation [GO:0016036]; galactolipid biosynthetic process [GO:0019375]; intracellular protein transport [GO:0006886]; lipid metabolic process [GO:0006629]; phospholipid biosynthetic process [GO:0008654],apoplast [GO:0048046]; cytosol [GO:0005829]; membrane [GO:0016020]; phosphatidate phosphatase activity [GO:0008195]; galactolipid biosynthetic process [GO:0019375]; phospholipid biosynthetic process [GO:0008654],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, siliques, embryos and mature seeds. {ECO:0000269|PubMed:20699392, ECO:0000269|PubMed:21205207}. locus:2075019;,locus:2160036; AT3G09560,AT5G42870 Lipin family Os11g0615000 protein (Fragment),Os05g0462400 protein (Putative lipin 2),Os01g0637100 protein (Fragment),Os05g0462301 protein (Fragment) Q0IRM9,Q6L4Z4,A0A0P0V5Q4,A0A0P0WNA4 Q0IRM9_ORYSJ,Q6L4Z4_ORYSJ,A0A0P0V5Q4_ORYSJ,A0A0P0WNA4_ORYSJ Os11g0615000 OSNPB_110615000,Os05g0462400 Os05g0462400 OJ1281_H05.20 OJ1525_A02.7 OSNPB_050462400,Os01g0637100 OSNPB_010637100,Os05g0462301 OSNPB_050462301 ENOG411DQ21 Q94AF2 NNRD_ARATH ATP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.93) (ATP-dependent NAD(P)HX dehydratase) FUNCTION: Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. {ECO:0000255|HAMAP-Rule:MF_03157}. R-ATH-197264; 4.2.1.93 39269 ATP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.93) (ATP-dependent NAD(P)HX dehydratase) chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; ADP-dependent NAD(P)H-hydrate dehydratase activity [GO:0052855]; ATP binding [GO:0005524]; ATP-dependent NAD(P)H-hydrate dehydratase activity [GO:0047453]; NADHX epimerase activity [GO:0052856]; NADPHX epimerase activity [GO:0052857]; NADH metabolic process [GO:0006734]; NADP metabolic process [GO:0006739] locus:2182147; AT5G19150 Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP which is converted to ADP. Together with NAD(P)HX epimerase which catalyzes the epimerization of the S- and R-forms the enzyme allows the repair of both epimers of NAD(P)HX a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (By similarity) ATP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.93) (ATP-dependent NAD(P)HX dehydratase) Q53Q78 Q53Q78_ORYSJ LOC_Os11g17610 Os11g0276300 OSNPB_110276300 FUNCTION: Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. {ECO:0000256|HAMAP-Rule:MF_03157}. ENOG411DQ20 FKBP65,FKBP62,ROF1 Q9FJL3,Q38931,B3H746 FKB65_ARATH,FKB62_ARATH,B3H746_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 (PPIase FKBP65) (EC 5.2.1.8) (70 kDa peptidyl-prolyl isomerase) (FK506-binding protein 65) (AtFKBP65) (Immunophilin FKBP65) (Peptidyl-prolyl isomerase ROF2) (Protein ROTAMASE FKBP 2) (Rotamase),Peptidyl-prolyl cis-trans isomerase FKBP62 (PPIase FKBP62) (EC 5.2.1.8) (70 kDa peptidyl-prolyl isomerase) (FK506-binding protein 62) (AtFKBP62) (Immunophilin FKBP62) (Peptidylprolyl isomerase ROF1) (Protein ROTAMASE FKBP 1) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) DISRUPTION PHENOTYPE: Acid sensitivity and increased susceptibility to P.syringae infection. {ECO:0000269|PubMed:22268595, ECO:0000269|PubMed:24440291}. Mutant plants exhibited collapse when 24-48 h passed between acclimation at 37 degrees C and exposure to 45 degrees C Sensitive to high temperature-A. Breiman-2009 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis. May be a part of transcription regulation pathways upon pathogen infection. {ECO:0000269|PubMed:19876748, ECO:0000269|PubMed:22268595, ECO:0000269|PubMed:24440291}.,FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. {ECO:0000250, ECO:0000269|PubMed:17080288, ECO:0000269|PubMed:19366428}. 5.2.1.8; 5.2.1.8 65223,61453,62912 Peptidyl-prolyl cis-trans isomerase FKBP65 (PPIase FKBP65) (EC 5.2.1.8) (70 kDa peptidyl-prolyl isomerase) (FK506-binding protein 65) (AtFKBP65) (Immunophilin FKBP65) (Peptidyl-prolyl isomerase ROF2) (Protein ROTAMASE FKBP 2) (Rotamase),Peptidyl-prolyl cis-trans isomerase FKBP62 (PPIase FKBP62) (EC 5.2.1.8) (70 kDa peptidyl-prolyl isomerase) (FK506-binding protein 62) (AtFKBP62) (Immunophilin FKBP62) (Peptidylprolyl isomerase ROF1) (Protein ROTAMASE FKBP 1) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) nucleus [GO:0005634]; vacuole [GO:0005773]; calmodulin binding [GO:0005516]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; cellular heat acclimation [GO:0070370]; chaperone-mediated protein folding [GO:0061077],cytoplasm [GO:0005737]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; cellular heat acclimation [GO:0070370]; chaperone-mediated protein folding [GO:0061077],cell periphery [GO:0071944]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; phosphatidylinositol-3,5-bisphosphate binding [GO:0080025]; phosphatidylinositol-3-phosphate binding [GO:0032266]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to wounding [GO:0009611]; seed germination [GO:0009845] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:17080288}.,TISSUE SPECIFICITY: Expressed at low levels in roots, stems, leaves and flowers. Detected in the vascular elements of roots, in hydathodes and trichomes of leaves and in stigma, sepals, and anthers. {ECO:0000269|PubMed:17080288, ECO:0000269|PubMed:8914512}. locus:2152561;,locus:2090265; AT5G48570,AT3G25230 peptidylprolyl Peptidylprolyl isomerase (EC 5.2.1.8),Peptidylprolyl isomerase (EC 5.2.1.8) (Fragment) Q9XFE4,Q7F1F2,Q657L5,A0A0P0V450,A0A0P0V4A4,A0A0P0V444 Q9XFE4_ORYSJ,Q7F1F2_ORYSJ,Q657L5_ORYSJ,A0A0P0V450_ORYSJ,A0A0P0V4A4_ORYSJ,A0A0P0V444_ORYSJ Os04g0352400 Os04g0352400 OsJ_14391 OSJNBa0091C07.4 OSNPB_040352400,OJ1191_A10.119 Os08g0525600 OSNPB_080525600,P0468H06.14-5 Os01g0563000 P0496H05.39-4 OSNPB_010563000,Os01g0562400 OSNPB_010562400,Os01g0563000 OSNPB_010563000,Os01g0561900 OSNPB_010561900 ENOG411EH09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Intraflagellar transport 74 homolog (Chlamydomonas) NA NA NA NA NA NA NA ENOG411EH08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_RBZ NA NA NA NA NA NA NA ENOG411EDQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0547067 protein (Fragment),Os09g0545650 protein A0A0P0XQ50,A0A0P0XQM2 A0A0P0XQ50_ORYSJ,A0A0P0XQM2_ORYSJ Os09g0547067 OSNPB_090547067,Os09g0545650 OSNPB_090545650 ENOG411EH0M YUP8H12.5 O23036 O23036_ARATH YUP8H12.5 15821 YUP8H12.5 locus:2207200; AT1G05330 NA NA NA NA NA NA NA NA ENOG411EH0K T20O10_140 Q9LYB8 Q9LYB8_ARATH At3g63040 (Uncharacterized protein At3g63040) (Uncharacterized protein T20O10_140) 21039 At3g63040 (Uncharacterized protein At3g63040) (Uncharacterized protein T20O10_140) locus:2099202; AT3G63040 NA NA NA NA NA NA NA NA ENOG411DTEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Der1-like family NA NA NA NA NA NA NA ENOG411EH0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0851050 protein A0A0P0W5M0 A0A0P0W5M0_ORYSJ Os03g0851050 OSNPB_030851050 ENOG411DTE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP NA NA NA NA NA NA NA ENOG411DXCX CYB561B Q9SWS1 ACFR2_ARATH Probable transmembrane ascorbate ferrireductase 2 (EC 1.16.5.1) (Cytochrome b561-1) (Artb561-2) (AtCytb561) (Protein b561A.tha4) FUNCTION: Two-heme-containing cytochrome. Catalyzes ascorbate-dependent trans-membrane ferric-chelate reduction (By similarity). {ECO:0000250}. R-ATH-917937; 1.16.5.1; 1.16.5.1 25289 Probable transmembrane ascorbate ferrireductase 2 (EC 1.16.5.1) (Cytochrome b561-1) (Artb561-2) (AtCytb561) (Protein b561A.tha4) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; oxidation-reduction process [GO:0055114] DEVELOPMENTAL STAGE: Strong redution in expression levels in flowers following fertilization. {ECO:0000269|PubMed:15032866}. TISSUE SPECIFICITY: Expressed in roots, seedlings, leaves and flowers. Expressed in the L1 layer of the shoot apex, in the epidermis of leaf primordia and young leaves and in vascular bundles. In the differentiation zone of the root, detected in the pericycle and in the epidermis, but not in the cortex. Strongly expressed in the cortical region of the root tip, in the meristematic tissue and in the epidermal cell layer of lateral roots, but not in the root caps. Highly expressed in unfertilized ovules. In mature embryos, expressed in the epidermis, cotyledon tips and root tips. {ECO:0000269|PubMed:15032866}. locus:2159858; AT5G38630 B561 Os08g0384000 protein (Putative cytochrome b-561) (cDNA, clone: J100078H15, full insert sequence) Q6YW65 Q6YW65_ORYSJ Os08g0384000 B1090H08.30 OsJ_27146 OSNPB_080384000 ENOG411DXCZ MSH3 O65607 MSH3_ARATH DNA mismatch repair protein MSH3 (AtMSH3) (MutS protein homolog 3) FUNCTION: Component of the post-replicative DNA mismatch repair system (MMR). Forms the heterodimer MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. MutS beta recognizes single base mismatches and trinucleotide insertion-deletion loops (IDL) in the DNA. {ECO:0000269|PubMed:10852942}. R-ATH-5358606; 119366 DNA mismatch repair protein MSH3 (AtMSH3) (MutS protein homolog 3) mismatch repair complex [GO:0032300]; nucleus [GO:0005634]; ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA-dependent ATPase activity [GO:0008094]; heteroduplex DNA loop binding [GO:0000404]; mismatched DNA binding [GO:0030983]; maintenance of DNA repeat elements [GO:0043570]; mismatch repair [GO:0006298] locus:2131829; AT4G25540 DNA mismatch repair protein NA NA NA NA NA NA NA ENOG411E2Q8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AT hook motif family protein Os01g0835600 protein (cDNA clone:001-042-C05, full insert sequence) (cDNA clone:J013000C20, full insert sequence) (cDNA clone:J033086E04, full insert sequence),Os01g0835600 protein Q5QMH2,A0A0P0VA28 Q5QMH2_ORYSJ,A0A0P0VA28_ORYSJ P0506B12.20-1 Os01g0835600 OsJ_03991 OSNPB_010835600,Os01g0835600 OSNPB_010835600 ENOG411DXCQ Q9FMU5 UTP18_ARATH U3 small nucleolar RNA-associated protein 18 homolog FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA. {ECO:0000250}. R-ATH-6791226; 60988 U3 small nucleolar RNA-associated protein 18 homolog Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2174698; AT5G14050 U3 small nucleolar RNA-associated protein 18 Os07g0603200 protein (Putative WD repeat protein) (cDNA clone:001-124-C09, full insert sequence) Q6YW01 Q6YW01_ORYSJ Os07g0603200 OSJNBb0018H10.28 OSJNBb0039M16.18 OSNPB_070603200 ENOG411DXCR Q9SAH3 Y1887_ARATH Putative receptor-like protein kinase At1g80870 (EC 2.7.11.1) 2.7.11.1 78550 Putative receptor-like protein kinase At1g80870 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2025742; AT1G80870 receptor-like protein kinase Os08g0275200 protein A0A0P0XE50 A0A0P0XE50_ORYSJ Os08g0275200 OSNPB_080275200 ENOG411DXCH GCP3 Q9FG37 GACP3_ARATH Gamma-tubulin complex component 3 (AtGCP3) (GCP-3) (Spindle pole body component 98) (AtSPC98) FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. Required for the positioning of the gamma-tubulin-containing complex on pre-existing microtubules and for the proper organization of cortical arrays.; FUNCTION: Gamma-tubulin complex is essential for the control of microtubular network remodeling in the course of initiation and development of giant-feeding cells, and for the successful reproduction of nematodes (e.g. Meloidogyne spp.) in their plant hosts. 94647 Gamma-tubulin complex component 3 (AtGCP3) (GCP-3) (Spindle pole body component 98) (AtSPC98) cell cortex [GO:0005938]; cortical microtubule [GO:0055028]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; equatorial microtubule organizing center [GO:0000923]; gamma-tubulin complex [GO:0000930]; gamma-tubulin small complex [GO:0008275]; microtubule [GO:0005874]; nuclear envelope [GO:0005635]; spindle [GO:0005819]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; structural constituent of cytoskeleton [GO:0005200]; tubulin binding [GO:0015631]; cytoplasmic microtubule organization [GO:0031122]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; meiotic cell cycle [GO:0051321]; microtubule nucleation [GO:0007020]; mitotic spindle assembly [GO:0090307]; positive regulation of microtubule nucleation [GO:0090063]; response to nematode [GO:0009624] locus:2170164; AT5G06680 gamma-tubulin complex component Gamma-tubulin complex component A0A0P0XMI4 A0A0P0XMI4_ORYSJ Os09g0446200 OSNPB_090446200 FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000256|RuleBase:RU363050}. ENOG411DUVQ LBD22,LBD34 Q9LRW1,P59469 LBD22_ARATH,LBD34_ARATH LOB domain-containing protein 22 (ASYMMETRIC LEAVES 2-like protein 30) (AS2-like protein 30),LOB domain-containing protein 34 (ASYMMETRIC LEAVES 2-like protein 42) (AS2-like protein 42) 30567,15782 LOB domain-containing protein 22 (ASYMMETRIC LEAVES 2-like protein 30) (AS2-like protein 30),LOB domain-containing protein 34 (ASYMMETRIC LEAVES 2-like protein 42) (AS2-like protein 42) locus:2087999;,locus:2147885; AT3G13850,AT5G15060 lob domain-containing protein Os08g0402100 protein (Fragment) C7J5S5 C7J5S5_ORYSJ Os08g0402100 Os08g0402100 OSNPB_080402100 ENOG411EHY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Predicted coiled-coil domain-containing protein (DUF2360) NA NA NA NA NA NA NA ENOG411DUVY WAP O64584,F4IIV0 WAP_ARATH,F4IIV0_ARATH WPP domain-associated protein,Myosin heavy chain-like protein 94604,94730 WPP domain-associated protein,Myosin heavy chain-like protein Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739] locus:2061524; AT2G34730 WPP domain-associated Myosin heavy chain-like protein (Os09g0133800 protein) (cDNA clone:J023010J11, full insert sequence),Os12g0612300 protein (WPP domain associated protein, putative, expressed),Os09g0133800 protein (Fragment) Q6K437,Q2QMA1,A0A0P0XIP6 Q6K437_ORYSJ,Q2QMA1_ORYSJ,A0A0P0XIP6_ORYSJ P0406E03.34-1 Os09g0133800 OsJ_28460 OSNPB_090133800,LOC_Os12g41810 Os12g0612300 OsJ_36846 OSNPB_120612300,Os09g0133800 OSNPB_090133800 ENOG411DUVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA double-stranded RNA binding motif containing protein expressed Double-stranded RNA-binding protein 1 (dsRNA-binding protein 1) Q5N8Z0 DRB1_ORYSJ DRB1 Os01g0772000 LOC_Os01g56520 P0695H10.10 FUNCTION: Binds double-stranded RNA. {ECO:0000250}. ENOG411EHYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411DUY9 GUX2,PGSIP3 Q8GWW4,A0A1P8B3E0,A0A1P8B3D1,A0A1P8B3E3 GUX2_ARATH,A0A1P8B3E0_ARATH,A0A1P8B3D1_ARATH,A0A1P8B3E3_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 (UDP-GlcA:xylan glucuronyltransferase 2) (EC 2.4.1.-) (Glycogenin-like protein 2) (Plant glycogenin-like starch initiation protein 3) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 2) (AtGUX2),Hexosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show reduced xylan substitution. {ECO:0000269|PubMed:20852069}. Abnormal xylan modification-P. Dupree-2010 FUNCTION: Glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls. In association with GUX1, is responsible for almost all of the substitutions of the xylan backbone in stem glucuronoxylan. {ECO:0000269|PubMed:20852069}. R-ATH-5357572;R-ATH-6798695;R-ATH-70221; 2.4.1.- 70059,71411,54047,62540 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 (UDP-GlcA:xylan glucuronyltransferase 2) (EC 2.4.1.-) (Glycogenin-like protein 2) (Plant glycogenin-like starch initiation protein 3) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 2) (AtGUX2),Hexosyltransferase (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucuronosyltransferase activity [GO:0015020]; glucuronoxylan glucuronosyltransferase activity [GO:0080116]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan biosynthetic process [GO:0045492],Golgi apparatus [GO:0005794]; glucuronosyltransferase activity [GO:0015020]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan biosynthetic process [GO:0045492] locus:2119241; AT4G33330 Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-),Os03g0184300 protein Q94HG3,A0A0P0VTW2 Q94HG3_ORYSJ,A0A0P0VTW2_ORYSJ Os03g0184300 LOC_Os03g08600 OSJNBa0032G08.4 OSNPB_030184300,Os03g0184300 OSNPB_030184300 ENOG411DUY6 CTPA1 F4KHG6 CTPA1_ARATH Carboxyl-terminal-processing peptidase 1, chloroplastic (EC 3.4.21.102) (D1 C-terminal processing protease 1) (Photosystem II D1 protein processing peptidase 1) FUNCTION: Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation. {ECO:0000250|UniProtKB:O04073}. 3.4.21.102 53033 Carboxyl-terminal-processing peptidase 1, chloroplastic (EC 3.4.21.102) (D1 C-terminal processing protease 1) (Photosystem II D1 protein processing peptidase 1) chloroplast thylakoid lumen [GO:0009543]; thylakoid lumen [GO:0031977]; endopeptidase activity [GO:0004175]; serine-type peptidase activity [GO:0008236] locus:2170443; AT5G46390 peptidase S41 family protein Os01g0664000 protein A0A0P0V6A3 A0A0P0V6A3_ORYSJ Os01g0664000 OSNPB_010664000 ENOG411DUY7 Q8GWT2,F4KFK3 Q8GWT2_ARATH,F4KFK3_ARATH At5g16980 (Putative quinone oxidoreductase) (Zinc-binding dehydrogenase family protein),Zinc-binding dehydrogenase family protein ARA:AT5G16980-MONOMER; 26581,34282 At5g16980 (Putative quinone oxidoreductase) (Zinc-binding dehydrogenase family protein),Zinc-binding dehydrogenase family protein oxidation-reduction process [GO:0055114],oxidoreductase activity [GO:0016491] locus:2148146; AT5G16980 NADP-dependent alkenal double bond reductase NADPH oxidoreductase (OSJNBa0067K08.13 protein) (Os04g0497000 protein) (cDNA clone:006-210-F02, full insert sequence) (cDNA clone:J023008C06, full insert sequence),NADP-dependent oxidoreductase P2, putative, expressed (Os12g0226900 protein) (cDNA clone:006-201-E06, full insert sequence) (cDNA clone:J023105O06, full insert sequence),NADP-dependent oxidoreductase P2, putative, expressed (Os12g0226700 protein),NADP-dependent oxidoreductase P1, putative, expressed (Os12g0227400 protein) (cDNA, clone: J100082K03, full insert sequence) Q7XUK3,Q2QVJ6,Q2QVJ8,Q2QVJ5 Q7XUK3_ORYSJ,Q2QVJ6_ORYSJ,Q2QVJ8_ORYSJ,Q2QVJ5_ORYSJ OsNADPH-1 Os04g0497000 OsJ_15331 OSJNBa0067K08.13 OSNPB_040497000,Os12g0226900 LOC_Os12g12580 Os12g0226900 OsJ_35618 OSNPB_120226900,Os12g0226700 LOC_Os12g12560 Os12g0226700 OsJ_35616 OSNPB_120226700,Os12g0227400 LOC_Os12g12590 OsJ_35620 OSNPB_120227400 ENOG411DUY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0104800 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J023081I19, full insert sequence) Q9AYI5 Q9AYI5_ORYSJ LOC_Os10g01560 Os10g0104800 OSJNBa0071K19.13 OSNPB_100104800 ENOG411DUY5 AAE17 F4KBF3,A0A1R7T3B7 AAE17_ARATH,A0A1R7T3B7_ARATH Probable acyl-activating enzyme 17, peroxisomal (EC 6.2.1.-),Acyl-activating enzyme 17 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19043666}. FUNCTION: May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. {ECO:0000250}. R-ATH-77111; 6.2.1.- 79181,65619 Probable acyl-activating enzyme 17, peroxisomal (EC 6.2.1.-),Acyl-activating enzyme 17 peroxisome [GO:0005777]; ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631],catalytic activity [GO:0003824]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in leaves, stems and developing seeds. {ECO:0000269|PubMed:12805634}. locus:2178277; AT5G23050 acyl-activating enzyme 17 Os09g0380000 protein,Os09g0380050 protein (Fragment),Os09g0380000 protein (Fragment) A0A0P0XLW3,A0A0P0XLK7,A0A0P0XL49 A0A0P0XLW3_ORYSJ,A0A0P0XLK7_ORYSJ,A0A0P0XL49_ORYSJ Os09g0380000 OSNPB_090380000,Os09g0380050 OSNPB_090380050 ENOG411DUY0 MJB24.14 Q9LVC5 Q9LVC5_ARATH Apospory-associated protein C (Galactose mutarotase-like superfamily protein) (Uncharacterized protein At5g57330) ARA:GQT-817-MONOMER; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Glycolysis / Gluconeogenesis (00010),Metabolic pathways (01100) 35447 Apospory-associated protein C (Galactose mutarotase-like superfamily protein) (Uncharacterized protein At5g57330) cytosol [GO:0005829]; carbohydrate binding [GO:0030246]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975]; response to abscisic acid [GO:0009737] locus:2165580; AT5G57330 glucose-6-phosphate 1-epimerase-like Os04g0658000 protein (cDNA clone:J013170O13, full insert sequence),Glucose-6-phosphate 1-epimerase (EC 5.1.3.15) B7EFL7,Q8S3Q3 B7EFL7_ORYSJ,Q8S3Q3_ORYSJ Os04g0658000 OSNPB_040658000,24K23.3 Os04g0658000 OsJ_16471 OSJNBa0011F23.4 OSNPB_040658000 ENOG411DUYZ CPK1,CPK2,CPK20 Q06850,Q38870,Q9ZV15 CDPK1_ARATH,CDPK2_ARATH,CDPKK_ARATH Calcium-dependent protein kinase 1 (AtCDPK 1) (CDPK 1) (EC 2.7.11.1) (Calcium-dependent protein kinase isoform AK1),Calcium-dependent protein kinase 2 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 2),Calcium-dependent protein kinase 20 (EC 2.7.11.1) FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Phosphorylates the Ca(2+)-ATPase ACA2 resulting in the inhibition of its calcium activation. {ECO:0000269|PubMed:10747788, ECO:0000269|PubMed:10823962, ECO:0000269|PubMed:8003490, ECO:0000269|PubMed:8855961}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1; 2.7.11.1 68254,72254,64721 Calcium-dependent protein kinase 1 (AtCDPK 1) (CDPK 1) (EC 2.7.11.1) (Calcium-dependent protein kinase isoform AK1),Calcium-dependent protein kinase 2 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 2),Calcium-dependent protein kinase 20 (EC 2.7.11.1) nucleus [GO:0005634]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein kinase activity [GO:0010857]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468],endoplasmic reticulum membrane [GO:0005789]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2175503;,locus:2075885;,locus:2065021; AT5G04870,AT3G10660,AT2G38910 calcium-dependent protein kinase Calcium-dependent protein kinase 11 (OsCDPK11) (OsCPK11) (EC 2.7.11.1) Q852N6 CDPKB_ORYSJ CPK11 Os03g0789000 LOC_Os03g57510 OsJ_12886 OSJNBa0087O09.4 OSJNBb0024J04.26 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411DUYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase Os01g0119000 protein (Putative HGA6) (cDNA clone:001-205-C08, full insert sequence) Q9FTE0 Q9FTE0_ORYSJ Os01g0119000 Os01g0119000 OSNPB_010119000 P0494A10.28 P0698A04.12 ENOG411DUYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411DUYV NAT11 Q6SZ87 NAT11_ARATH Nucleobase-ascorbate transporter 11 (AtNAT11) R-ATH-196836; 77914 Nucleobase-ascorbate transporter 11 (AtNAT11) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in leaf primordia and vasculature of pedicels, rosette leaves, sepals, carpels and siliques. Expressed in the root central cylinder. {ECO:0000269|PubMed:16982705}. locus:2120953; AT4G38050 nucleobase-ascorbate transporter Os07g0490500 protein (Fragment) Q0D6D4 Q0D6D4_ORYSJ Os07g0490500 Os07g0490500 OSNPB_070490500 ENOG411DUYT SARD4 Q9FLY0 SARD4_ARATH Protein SAR DEFICIENT 4 (Ornithine cyclodeaminase-like protein) (AtOCD) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:24237637, PubMed:27758894). Mutant plants have compromised systemic acquired resistance (SAR) (PubMed:27758894). Mutant seedlings accumulate increased levels of proline (PubMed:24237637). {ECO:0000269|PubMed:24237637, ECO:0000269|PubMed:27758894}. FUNCTION: Involved in the biosynthesis of pipecolate (Pip), a metabolite that orchestrates defense amplification, positive regulation of salicylic acid (SA) biosynthesis, and priming to guarantee effective local resistance induction and the establishment of systemic acquired resistance (SAR). Converts delta-(1)-piperideine-2-carboxylate (P2C) to Pip. Mediates reduction of P2C and biosynthesis of Pip in systemic tissue and contributes to SAR establishment (PubMed:27758894). Does not possess ornithine cyclodeaminase activity in vitro (PubMed:24237637). {ECO:0000269|PubMed:24237637, ECO:0000269|PubMed:27758894}. R-ATH-71064; 35223 Protein SAR DEFICIENT 4 (Ornithine cyclodeaminase-like protein) (AtOCD) chloroplast [GO:0009507]; oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [GO:0016639]; defense response [GO:0006952]; positive regulation of systemic acquired resistance [GO:1901672] locus:2176882; AT5G52810 Ornithine cyclodeaminase/mu-crystallin family Ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed (Os10g0533200 protein) (cDNA clone:001-206-D08, full insert sequence) Q8LN35 Q8LN35_ORYSJ Os10g0533200 LOC_Os10g38930 Os10g0533200 OSJNBa0053C23.23 OSNPB_100533200 ENOG411DUYS Q9ZUI4 Q9ZUI4_ARATH 3'-5'-exoribonuclease family protein (At1g60080) (T2K10.14 protein) (Uncharacterized protein At1g60080) R-ATH-429958;R-ATH-450604;R-ATH-6791226; 32699 3'-5'-exoribonuclease family protein (At1g60080) (T2K10.14 protein) (Uncharacterized protein At1g60080) cytoplasmic exosome (RNase complex) [GO:0000177]; cytosol [GO:0005829]; nuclear exosome (RNase complex) [GO:0000176]; AU-rich element binding [GO:0017091]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear mRNA surveillance [GO:0071028]; nuclear polyadenylation-dependent mRNA catabolic process [GO:0071042]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; U1 snRNA 3'-end processing [GO:0034473]; U4 snRNA 3'-end processing [GO:0034475]; U5 snRNA 3'-end processing [GO:0034476] locus:2202705; AT1G60080 Exosome complex Expressed protein (Os11g0311300 protein),3' exoribonuclease family domain 1-containing protein, putative, expressed (Os11g0311300 protein) (cDNA clone:J033023A06, full insert sequence) (cDNA clone:J033113A20, full insert sequence),Os11g0311300 protein (Fragment) Q53M91,B7ELW5,Q0IT44 Q53M91_ORYSJ,B7ELW5_ORYSJ,Q0IT44_ORYSJ Os11g0311300 LOC_Os11g20680 OSNPB_110311300,Os11g0311300 LOC_Os11g20689 OsJ_33746 OSNPB_110311300,Os11g0311300 OSNPB_110311300 ENOG411DUYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7),Os03g0392100 protein Q7X8H7,A0A0P0VYD2 Q7X8H7_ORYSJ,A0A0P0VYD2_ORYSJ prx55 Os04g0465100 OSJNBa0060P14.16 OSJNBb0048E02.7 OSNPB_040465100,Os03g0392100 OSNPB_030392100 ENOG411DUYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid kinase family NA NA NA NA NA NA NA ENOG411DUYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family OSJNBa0076N16.20 protein (Os04g0491500 protein),Os04g0491500 protein,Os04g0491200 protein Q7XRI7,A0A0P0WBR3,A0A0P0WBS7 Q7XRI7_ORYSJ,A0A0P0WBR3_ORYSJ,A0A0P0WBS7_ORYSJ Os04g0491500 OsJ_15293 OSJNBa0076N16.20 OSNPB_040491500,Os04g0491500 OSNPB_040491500,Os04g0491200 OSNPB_040491200 ENOG411DUYK SMC4,SMC3 Q9FJL0,F4K1S1 SMC4_ARATH,F4K1S1_ARATH Structural maintenance of chromosomes protein 4 (AtSMC4) (SMC protein 4) (SMC-4) (Chromosome-associated protein C) (AtCAP-C),Structural maintenance of chromosomes protein Male and female gametophyte defective; Embryo defective-C.D. Riggs-2006 FUNCTION: Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Also involved in chromosome segregation in meiosis. {ECO:0000269|PubMed:16482433}. R-ATH-2299718;R-ATH-2514853; 141130,141444 Structural maintenance of chromosomes protein 4 (AtSMC4) (SMC protein 4) (SMC-4) (Chromosome-associated protein C) (AtCAP-C),Structural maintenance of chromosomes protein chromosome [GO:0005694]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; meiotic cell cycle [GO:0051321]; mitotic chromosome condensation [GO:0007076]; mitotic sister chromatid segregation [GO:0000070],chromosome [GO:0005694]; nucleus [GO:0005634]; ATP binding [GO:0005524]; transporter activity [GO:0005215]; chromosome organization [GO:0051276] TISSUE SPECIFICITY: Highly expressed in seedlings and inflorescences. {ECO:0000269|PubMed:16482433}. locus:2152526; AT5G48600 structural maintenance of chromosomes protein Os05g0497150 protein (Fragment) A0A0P0WP88 A0A0P0WP88_ORYSJ Os05g0497150 OSNPB_050497150 ENOG411DUYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglycosylase/hydrolase protein 8 (EC 2.4.1.207) (End-xyloglucan transferase) (OsXRT5) (OsXTH8) Q76BW5 XTH8_ORYSJ XTH8 XRT5 Os08g0237000 LOC_Os08g13920 P0682A06.17 DISRUPTION PHENOTYPE: Plants exhibit up to 50% growth reduction when they reach maturity. {ECO:0000269|PubMed:15516498}. FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). May promote elongation of three internodes (II, III and IV) and may be involved in cell elongation processes. {ECO:0000250, ECO:0000269|PubMed:15516498}. MISCELLANEOUS: Lower level of XTH8 transcript detected in Tanginbozu, a GA-deficient semidwarf mutant, and higher level detected in Slender rice 1 (slr1), a GA-insensitive mutant showing a constitutive GA-response phenotype. ENOG411DUYF RPK2 Q9S7I6,A0A1I9LRQ5 RPK2_ARATH,A0A1I9LRQ5_ARATH LRR receptor-like serine/threonine-protein kinase RPK2 (EC 2.7.11.1) (Protein TOADSTOOL 2) (Receptor-like protein kinase 2),Receptor-like protein kinase 2 DISRUPTION PHENOTYPE: Impaired central domain protoderm patterning defects, and defective cotyledon primordia cell types. Enhanced shoot growth, and male sterility due to defects in anther dehiscence and pollen maturation. {ECO:0000269|PubMed:17419837, ECO:0000269|PubMed:18158146}. insensitive to synthetic CLV3 peptide; stem cell expansion; increased number of floral organs.,Homozygous progeny developed more spindly shoots with shorter siliques than the wild type.,The homozygous plants are infertile.,The homozygous progeny is indistinguishable from wild-type plants during vegetative growth but showed several morphological alterations after bolting. These plants displayed enhanced inflorescence branching and formed three times as many siliques and flowers as did wild-type plants.,At the flowering stage the flowers of the homozygous progeny showed normal floral structures consisting of the four floral organs: sepals petals stamens and carpels. However the mutant flowers contained no dehiscent anthers whereas wild-type flowers developed dehiscent anthers with dispersed pollen grains. The three-dimensional surface images revealed that the wild-type anthers at flowering stage were broken and many pollen grains released while mutant anthers remained enlarged yet failed to dehisce.,Male sterile.,Thickening of the endothecium in rpk2-2 anthers was inhibited; this tissue remained as a thin layer during stages 11-13.,Whereas development of the rpk2-2 anther locules proceeded normally until stage 4 inner secondary parietal cells directly differentiated into tapetum but did not give rise to the middle layer. Microspore mother cells in the rpk2-2 anthers underwent meiosis and formed tetrads between stages 5 and 7. However subsequent development of microspores was inhibited and deformed microspores that partially aggregated were observed at stage 11.,Whereas the surface structure of wildtype pollen grains consisted of elliptical balls with three grooves and a striped exine pattern. By contrast several rpk2-2 pollens showed deformed ellipses and a partially smooth surface with most pollen grains highly aggregated together. Spindly inflorescence stems; Increased branching; Male sterile due to abnormal anther dehiscence and pollen maturation-K. Yomaguchi-Shinozaki-2007 FUNCTION: Key regulator of anther development (e.g. lignification pattern), including tapetum degradation during pollen maturation (e.g. germination capacity). Together with RPK1, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis). {ECO:0000269|PubMed:17419837, ECO:0000269|PubMed:17543866, ECO:0000269|PubMed:18158146}. 2.7.11.1 125230,123109 LRR receptor-like serine/threonine-protein kinase RPK2 (EC 2.7.11.1) (Protein TOADSTOOL 2) (Receptor-like protein kinase 2),Receptor-like protein kinase 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; anther development [GO:0048653]; embryonic meristem development [GO:0048508]; lignin metabolic process [GO:0009808]; longitudinal axis specification [GO:0009942]; meristem maintenance [GO:0010073]; pollen germination [GO:0009846]; pollen maturation [GO:0010152]; protein homooligomerization [GO:0051260]; radial axis specification [GO:0009945]; response to cold [GO:0009409]; response to water deprivation [GO:0009414],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] DEVELOPMENTAL STAGE: First detected in the central domain protodermal cells when cotyledon primordia become recognizable, at the early globular stage. Later observed throughout the central domain and basal domain of the embryo proper. After bolting, localized in axillary buds and premature anthers. Abundant in the tapetum of wild-type anthers during microspore maturation. {ECO:0000269|PubMed:17419837, ECO:0000269|PubMed:17543866, ECO:0000269|PubMed:18158146}. TISSUE SPECIFICITY: Expressed in root tips, flowers, leaf meristems, and the bottom parts of the surrounding young leaves and trichomes. {ECO:0000269|PubMed:17419837}. locus:2076512; AT3G02130 LRR receptor-like serine threonine-protein kinase Os07g0602700 protein (Putative receptor-like protein kinase) (cDNA clone:J013134N21, full insert sequence) Q6YVY8 Q6YVY8_ORYSJ Os07g0602700 Os07g0602700 OSJNBb0018H10.19 OSJNBb0039M16.9 OSNPB_070602700 ENOG411DUYG F14F8_20 Q949U9,A0A1P8B9P4 Q949U9_ARATH,A0A1P8B9P4_ARATH Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein),Mitochondrial substrate carrier family protein 34726,34014 Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein),Mitochondrial substrate carrier family protein integral component of mitochondrial outer membrane [GO:0031307]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2143161; AT5G15640 Solute carrier family 25 member 36I5.1 (Mitochondrial carrier protein, putative, expressed) (Os03g0754800 protein) (Putative mitochondrial carrier protein) (cDNA clone:J033050O16, full insert sequence) Q9FNU5 Q9FNU5_ORYSJ OSJNBb0081K01.22 LOC_Os03g54760 Os03g0754800 OsJ_30972 OSNPB_030754800 ENOG411DUYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ-domain Os01g0896200 protein (Fragment) A0A0P0VBK5 A0A0P0VBK5_ORYSJ Os01g0896200 OSNPB_010896200 ENOG411DUYE LRS1 Q93ZS6 Q93ZS6_ARATH AT3g05090/T12H1_5 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g05090) R-ATH-5689880; 82197 AT3g05090/T12H1_5 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g05090) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; lateral root formation [GO:0010311] locus:2096254; AT3G05090 WD repeat-containing protein Os12g0165000 protein (WD repeat domain 48, putative, expressed),Os12g0165000 protein (Fragment) Q2QX93,A0A0P0Y7C9 Q2QX93_ORYSJ,A0A0P0Y7C9_ORYSJ Os12g0165000 LOC_Os12g06810 Os12g0165000 OSNPB_120165000,Os12g0165000 OSNPB_120165000 ENOG411DUYA PCMP-E65 Q9C7V5 PP104_ARATH Putative pentatricopeptide repeat-containing protein At1g64310 61400 Putative pentatricopeptide repeat-containing protein At1g64310 intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial RNA modification [GO:1900864] locus:2014270; AT1G64310 Pentatricopeptide repeat-containing protein Os01g0545900 protein A0A0P0V3T7 A0A0P0V3T7_ORYSJ Os01g0545900 OSNPB_010545900 ENOG411EHEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0610851 protein,Os03g0304550 protein A0A0P0VLI7,A0A0P0VX76 A0A0P0VLI7_ORYSJ,A0A0P0VX76_ORYSJ Os02g0610851 OSNPB_020610851,Os03g0304550 OSNPB_030304550 ENOG411EHEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHEM Q8LDR8 Q8LDR8_ARATH At3g15357 (Phosphopantothenoylcysteine decarboxylase subunit) 16079 At3g15357 (Phosphopantothenoylcysteine decarboxylase subunit) locus:505006352; AT3G15357 NA NA NA NA NA NA NA NA ENOG411EHEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Solute carrier family 35 NA NA NA NA NA NA NA ENOG411EHEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EHE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHE3 Q9LYX9 Q9LYX9_ARATH Striatin-like protein (Uncharacterized protein F15A17_90) 33321 Striatin-like protein (Uncharacterized protein F15A17_90) locus:2143533; AT5G03060 NA NA NA NA NA NA NA NA ENOG411EAMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinesterase NA NA NA NA NA NA NA ENOG411EBH0 PTI12,PTI13,PTI11 O49339,B9DFG5,Q8H1G6,O49338,A0A1P8AYR5,A0A1I9LM52,A0A1I9LM51,A0A1I9LM53 PTI12_ARATH,PTI13_ARATH,PTI11_ARATH,O49338_ARATH,A0A1P8AYR5_ARATH,A0A1I9LM52_ARATH,A0A1I9LM51_ARATH,A0A1I9LM53_ARATH PTI1-like tyrosine-protein kinase 2 (PTI1-2) (EC 2.7.10.2),PTI1-like tyrosine-protein kinase 3 (PTI1-3) (EC 2.7.10.2),PTI1-like tyrosine-protein kinase 1 (PTI1-1) (EC 2.7.10.2),Protein kinase superfamily protein (Putative serine/threonine protein kinase) (Uncharacterized protein At2g30730),Protein kinase superfamily protein FUNCTION: Probable tyrosine-protein kinase involved in oxidative burst-mediated signaling leading to specific genes expression. {ECO:0000269|PubMed:17040918}. R-ATH-446652; 2.7.10.2 40500,45658,39820,37551,38515,33019,41232,47308 PTI1-like tyrosine-protein kinase 2 (PTI1-2) (EC 2.7.10.2),PTI1-like tyrosine-protein kinase 3 (PTI1-3) (EC 2.7.10.2),PTI1-like tyrosine-protein kinase 1 (PTI1-1) (EC 2.7.10.2),Protein kinase superfamily protein (Putative serine/threonine protein kinase) (Uncharacterized protein At2g30730),Protein kinase superfamily protein plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; non-membrane spanning protein tyrosine kinase activity [GO:0004715]; protein kinase binding [GO:0019901]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; non-membrane spanning protein tyrosine kinase activity [GO:0004715]; protein kinase binding [GO:0019901]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; non-membrane spanning protein tyrosine kinase activity [GO:0004715]; protein kinase binding [GO:0019901]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] locus:2054502;,locus:2081277;,locus:2009115;,locus:2054492; AT2G30740,AT3G59350,AT1G06700,AT2G30730 serine threonine protein kinase NA NA NA NA NA NA NA ENOG411EAT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Laminin alpha 1 NA NA NA NA NA NA NA ENOG411EATB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARF NA NA NA NA NA NA NA ENOG411EATC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os04g0193950 protein A0A0P0W767 A0A0P0W767_ORYSJ Os04g0193950 OSNPB_040193950 ENOG411E5C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0854400 protein (cDNA clone:002-141-H12, full insert sequence) Q5N7V0 Q5N7V0_ORYSJ Os01g0854400 B1096A10.5 OsJ_04111 OSNPB_010854400 P0529E05.39 ENOG411E5C6 MRB17.3 Q8GYV1 Q8GYV1_ARATH Uncharacterized protein At5g54530 (Uncharacterized protein At5g54530/MRB17_3) 17959 Uncharacterized protein At5g54530 (Uncharacterized protein At5g54530/MRB17_3) locus:2172094; AT5G54530 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411E5C5 HIPP08 Q9M8T7 HIP8_ARATH Heavy metal-associated isoprenylated plant protein 8 (AtHIP08) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 27873 Heavy metal-associated isoprenylated plant protein 8 (AtHIP08) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2075497; AT3G02960 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E5C4 HTR12 Q8RVQ9 HTR12_ARATH Histone H3-like centromeric protein HTR12 (Centromeric histone CENH3) Embryo defective-Chan-2010 FUNCTION: Histone H3-like variant which exclusively replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. Required for recruitment and assembly of kinetochore proteins, mitotic progression and chromosome segregation. May serve as an epigenetic mark that propagates centromere identity through replication and cell division (By similarity). {ECO:0000250}. 19709 Histone H3-like centromeric protein HTR12 (Centromeric histone CENH3) chromatin [GO:0000785]; chromosome, centromeric region [GO:0000775]; condensed chromosome kinetochore [GO:0000777]; nucleosome [GO:0000786]; nucleus [GO:0005634]; nucleosomal DNA binding [GO:0031492]; protein heterodimerization activity [GO:0046982]; cell division [GO:0051301]; centromere complex assembly [GO:0034508]; double fertilization forming a zygote and endosperm [GO:0009567]; meiotic chromosome separation [GO:0051307]; nucleosome assembly [GO:0006334] DEVELOPMENTAL STAGE: Expressed and/or deposited to centromeres during G2 phase. {ECO:0000269|PubMed:17028205}. locus:2035252; AT1G01370 histone H3 Centromeric histone 3 (Histone H3) (Os05g0489800 protein) Q6T367 Q6T367_ORYSJ CenH3 Os05g0489800 OJ1119_H02.19 OsJ_19013 OSNPB_050489800 ENOG411E5C3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os03g0838500 protein (Putative Pi starvation induced protein) (Subtilisin N-terminal Region family protein, expressed) (cDNA clone:J023075F04, full insert sequence) Q851N0 Q851N0_ORYSJ OSJNBa0042I09.14 LOC_Os03g62210 Os03g0838500 OSNPB_030838500 ENOG411E5C2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0238200 protein (cDNA clone:001-102-E05, full insert sequence) (cDNA clone:001-111-D02, full insert sequence) Q9FTU6 Q9FTU6_ORYSJ Os01g0238200 Os01g0238200 OsJ_01039 OSJNBa0086P08.17 OSNPB_010238200 ENOG411E5C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acylphosphatase NA NA NA NA NA NA NA ENOG411E5C0 F4KEU4,F4KEU5 F4KEU4_ARATH,F4KEU5_ARATH Chromosome transmission fidelity-like protein 16141,12899 Chromosome transmission fidelity-like protein Ctf18 RFC-like complex [GO:0031390]; mitotic sister chromatid cohesion [GO:0007064] locus:2145081; AT5G52220 Chromosome transmission fidelity protein 8 Os09g0299300 protein (Fragment) A0A0P0XJX2 A0A0P0XJX2_ORYSJ Os09g0299300 OSNPB_090299300 ENOG411E5C9 Q9C926 Q9C926_ARATH Nucleic acid-binding, OB-fold-like protein (Putative replication protein; 94555-97079) 64507 Nucleic acid-binding, OB-fold-like protein (Putative replication protein; 94555-97079) plasmodesma [GO:0009506] locus:2011521; AT1G52950 Inherit from KOG: DNA helicase Os04g0132900 protein (Fragment),Expressed protein (Os03g0855700 protein),Os12g0539751 protein,Os01g0846000 protein (Fragment),Os01g0630900 protein (Fragment),Os04g0132950 protein,Os01g0838100 protein,Os03g0855700 protein (Fragment) C7J1J2,Q10AD8,A0A0P0YAY4,A0A0P0VAD7,A0A0P0V5L2,A0A0P0W729,A0A0N7KE12,A0A0P0W673 C7J1J2_ORYSJ,Q10AD8_ORYSJ,A0A0P0YAY4_ORYSJ,A0A0P0VAD7_ORYSJ,A0A0P0V5L2_ORYSJ,A0A0P0W729_ORYSJ,A0A0N7KE12_ORYSJ,A0A0P0W673_ORYSJ Os04g0132900 Os04g0132900 OSNPB_040132900,LOC_Os03g63870 Os03g0855700 OSNPB_030855700,Os12g0539751 OSNPB_120539751,Os01g0846000 OSNPB_010846000,Os01g0630900 OSNPB_010630900,Os04g0132950 OSNPB_040132950,Os01g0838100 OSNPB_010838100,Os03g0855700 OSNPB_030855700 ENOG411E5C8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor NA NA NA NA NA NA NA ENOG411E25W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyphenol oxidase middle domain NA NA NA NA NA NA NA ENOG411E5CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os01g0752500 protein (Putative ethylene responsive protein) Q5JMX7 Q5JMX7_ORYSJ Os01g0752500 OSNPB_010752500 P0046E05.41 P0435B05.22 ENOG411E5CV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0438400 protein) (cDNA clone:006-211-G01, full insert sequence) (cDNA clone:006-305-E04, full insert sequence),Os12g0438400 protein Q2QS65,Q0INK5 Q2QS65_ORYSJ,Q0INK5_ORYSJ Os12g0438400 LOC_Os12g25180 OSNPB_120438400,Os12g0438400 Os12g0438400 OSNPB_120438400 ENOG411E5CU DOG1 A0SVK0,A0A1P8BB61 DOG1_ARATH,A0A1P8BB61_ARATH Protein DELAY OF GERMINATION 1 (GLUCOSE SENSING QTL 5),Delay of germination 1 DISRUPTION PHENOTYPE: Loss of seed dormancy, but no effect on sugar sensitivity (in cv. Columbia) (PubMed:17065317, PubMed:18410483). A T-DNA insertion mutant lacking the long version of the DOG1 transcript (isoform 1) but expressing isoform 2 exhibits stronger seed dormancy (PubMed:26620523). {ECO:0000269|PubMed:17065317, ECO:0000269|PubMed:18410483, ECO:0000269|PubMed:26620523}. Absence of seed dormancy. But still require light-induced gibberellic acid (GA) biosynthesis to overcome inhibition by abscisic acid (ABA). Increased seed dormancy-M. Koornneef-2006 FUNCTION: Required for the induction of seed dormancy (PubMed:17065317, PubMed:26620523, PubMed:22829147). The level of DOG1 protein in freshly harvested seeds determines the level of seed dormancy (PubMed:22829147). Determines the temperature window for germination by regulating the expression of micropylar endosperm-weakening genes through temperature control of the gibberellins metabolism (PubMed:25114251). Regulates seed dormancy and flowering time through an influence on levels of microRNAs miR156 and miR172 (PubMed:27035986). Regulator of seed maturation interfering with abscisic acid signaling components and activating ABI5 (PubMed:26729600). In cv. Cvi-1, enhances glucose induction of ABI4 (PubMed:18410483). {ECO:0000269|PubMed:17065317, ECO:0000269|PubMed:18410483, ECO:0000269|PubMed:22829147, ECO:0000269|PubMed:25114251, ECO:0000269|PubMed:26620523, ECO:0000269|PubMed:26729600, ECO:0000269|PubMed:27035986}. MISCELLANEOUS: The Columbia and Landsberg erecta alleles have weak dormancy phenotypes, whereas the Cvi-1 allele shows a strong dormancy phenotype (PubMed:17065317). The Cvi-1 allele shows a sugar-supersensitive phenotype, whereas the Columbia and Landsberg erecta alleles don't have a significant effect on sugar sensitivity (PubMed:18410483). {ECO:0000269|PubMed:17065317, ECO:0000269|PubMed:18410483}.; MISCELLANEOUS: Transgenic mutant seeds expressing single DOG1 transcript variants lack dormancy and do not accumulate DOG1 protein. Simultaneous expression of two or more DOG1 transcript variants encoding different isoforms, however, leads to the accumulation of DOG1 protein and increased seed dormancy (PubMed:26684465). The spliceosome disassembly factor STIP1/NTR1 is required for proper transcript levels and splicing of DOG1 (PubMed:25568310). {ECO:0000269|PubMed:25568310, ECO:0000269|PubMed:26684465}.; MISCELLANEOUS: Isoform 2: The use of a proximal polyadenylation site leads to the production of a short DOG1 mRNA that is translated in vivo, producing an isoform that is sufficient for seed dormancy establishment. {ECO:0000269|PubMed:26620523}. 32470,34462 Protein DELAY OF GERMINATION 1 (GLUCOSE SENSING QTL 5),Delay of germination 1 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of seed dormancy process [GO:2000033]; regulation of transcription, DNA-templated [GO:0006355]; seed dormancy process [GO:0010162]; sugar mediated signaling pathway [GO:0010182]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Isoform 1 and isoform 2: Transcription starts at the beginning of seed maturation 9 days after pollination and reaches its highest level during the last phases of seed development (PubMed:26620523, PubMed:17065317, PubMed:22829147). Isoform 1: Upon imbibition the transcripts rapidly disappear in both dormant and after-ripened seeds, but the level of protein is hardly affected (PubMed:17065317, PubMed:22829147). Isoform 2: Transcription starts at the beginning of seed maturation 9 days after pollination and reaches its highest level during the last phases of seed development (PubMed:26620523). {ECO:0000269|PubMed:17065317, ECO:0000269|PubMed:22829147, ECO:0000269|PubMed:26620523}. TISSUE SPECIFICITY: Detected only in seeds (PubMed:17065317). Expressed mainly in vascular tissues of the cotyledon, hypocotyl and radicle of the embryo. {ECO:0000269|PubMed:17065317, ECO:0000269|PubMed:22829147}. locus:2152390; AT5G45830 Delay of germination 1 NA NA NA NA NA NA NA ENOG411E5CT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain Os02g0157600 protein A0A0P0VF26 A0A0P0VF26_ORYSJ Os02g0157600 OSNPB_020157600 ENOG411E5CS T31B5_160 Q9LYU2 Q9LYU2_ARATH Arginine/glutamate-rich 1 protein (Uncharacterized protein T31B5_160) 29428 Arginine/glutamate-rich 1 protein (Uncharacterized protein T31B5_160) locus:2183871; AT5G13340 NA NA NA NA NA NA NA NA ENOG411E5CR MSG15.4 Q9FJ96 Q9FJ96_ARATH At5g51960 (Complex 1 protein, LYR family protein) (Uncharacterized protein At5g51960) 11902 At5g51960 (Complex 1 protein, LYR family protein) (Uncharacterized protein At5g51960) locus:2173083; AT5G51960 NA Os12g0131266 protein (Os12g0131400 protein) (Fragment),Os11g0133900 protein (Fragment) C7JA02,A0A0P0XYN4 C7JA02_ORYSJ,A0A0P0XYN4_ORYSJ Os12g0131266 Os12g0131400 OSNPB_120131266,Os11g0133900 OSNPB_110133900 ENOG411E5CQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0669600 protein Q0DPQ9 Q0DPQ9_ORYSJ Os03g0669600 Os03g0669600 OsJ_12051 OSNPB_030669600 ENOG411E5CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DPBB_1 Os09g0472900 protein (cDNA clone:001-111-F08, full insert sequence),Os09g0472700 protein,Os06g0688200 protein,Os09g0473200 protein Q0J103,A0A0P0XN12,A0A0P0X049,A0A0P0XPJ7 Q0J103_ORYSJ,A0A0P0XN12_ORYSJ,A0A0P0X049_ORYSJ,A0A0P0XPJ7_ORYSJ Os09g0472900 Os09g0472900 OSNPB_090472900,Os09g0472700 OSNPB_090472700,Os06g0688200 OSNPB_060688200,Os09g0473200 OSNPB_090473200 ENOG411E5CZ Q1G3Q5 Q1G3Q5_ARATH Sterile alpha motif (SAM) domain protein 28197 Sterile alpha motif (SAM) domain protein locus:1009023213; AT2G12462 NA NA NA NA NA NA NA NA ENOG411E5CY URM1-1,URM1-2 A0MDQ1,B3H7G2 URM11_ARATH,URM12_ARATH Ubiquitin-related modifier 1 homolog 1,Ubiquitin-related modifier 1 homolog 2 FUNCTION: Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates. {ECO:0000255|HAMAP-Rule:MF_03048}. PATHWAY: tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03048}. 11287,11150 Ubiquitin-related modifier 1 homolog 1,Ubiquitin-related modifier 1 homolog 2 cytoplasm [GO:0005737]; tRNA thio-modification [GO:0034227] locus:4010713712;,locus:4515103292; AT2G45695,AT3G61113 Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys) tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins Ubiquitin-related modifier 1 homolog Q0D6M1 URM1_ORYSJ URM1 Os07g0466300 LOC_Os07g28280 OsJ_023216 P0404G11.126-1 FUNCTION: Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates. {ECO:0000255|HAMAP-Rule:MF_03048}. ENOG411E5CX OFP5 Q8VZN1 OFP5_ARATH Transcription repressor OFP5 (Ovate family protein 5) (AtOFP5) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:18055603}. Female gametophyte defective-V. Sundaresan-2007 FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. Required for embryo development. {ECO:0000269|PubMed:15781858, ECO:0000269|PubMed:18055603, ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP5 show kidney-shaped cotyledons, round and curled leaves, small rosette size, late flowering, reduced fertilization and round seeds. {ECO:0000305|PubMed:21886836}. 40371 Transcription repressor OFP5 (Ovate family protein 5) (AtOFP5) cortical cytoskeleton [GO:0030863]; nucleolus [GO:0005730]; embryo sac development [GO:0009553]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, and flower buds. {ECO:0000269|PubMed:21886836}. locus:2117079; AT4G18830 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E5CG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HATPase_c NA NA NA NA NA NA NA ENOG411E5CF Q9AST5,A0A1P8BDQ1 Q9AST5_ARATH,A0A1P8BDQ1_ARATH AT5g49540/K6M13_9 (Rab5-interacting family protein),Rab5-interacting family protein 12684,11838 AT5g49540/K6M13_9 (Rab5-interacting family protein),Rab5-interacting family protein ER membrane protein complex [GO:0072546]; autophagosome assembly [GO:0000045]; protein folding in endoplasmic reticulum [GO:0034975],ER membrane protein complex [GO:0072546] locus:2157849; AT5G49540 transmembrane protein 93 NA NA NA NA NA NA NA ENOG411E5CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5CD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0715300 protein (cDNA clone:006-205-B12, full insert sequence) Q6ZHP7 Q6ZHP7_ORYSJ Os02g0715300 Os02g0715300 OJ1191_G08.14 OsJ_08141 OSNPB_020715300 ENOG411E5CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) Os02g0134200 protein Q6Z6I0 Q6Z6I0_ORYSJ Os02g0134200 OSNPB_020134200 P0030G11.22 P0585B01.7 ENOG411E5CB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411E5CA Q8H0Z9 Q8H0Z9_ARATH Uncharacterized protein At5g13090 29876 Uncharacterized protein At5g13090 locus:2179872; AT5G13090 NA NA NA NA NA NA NA NA ENOG411E5CN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0534500 protein Q5Z5G3 Q5Z5G3_ORYSJ Os06g0534500 OSJNBa0001B21.8 OSNPB_060534500 P0506C10.33 ENOG411E5CM CML36 Q9SS31 CML36_ARATH Probable calcium-binding protein CML36 (Calmodulin-like protein 36) FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 22998 Probable calcium-binding protein CML36 (Calmodulin-like protein 36) plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; defense response to fungus [GO:0050832] locus:2076279; AT3G10190 calcium-binding NA NA NA NA NA NA NA ENOG411E5CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411E5CJ ABI4 A0MES8 ABI4_ARATH Ethylene-responsive transcription factor ABI4 (ERF ABI4) (Protein ABSCISIC ACID INSENSITIVE 4) (Protein GLUCOSE INSENSITIVE 6) (Protein IMPAIRED SUCROSE INDUCTION 3) (Protein SALOBRENO 5) (Protein SUCROSE UNCOUPLED 6) (Protein SUGAR INSENSITIVE 5) Mutant root growth was already somewhat reduced compared to WT plants under normal growth conditions but was significantly less sensitive to inhibition by 25 mM trehalose. Root length was reduced only by 46% compared to 90% in WT plants (Fig. 1B). The germination rates on trehalose were identical to those on medium without trehalose indicating that the smaller roots are not caused by delayed or deficient germination.,The inhibition of root growth in WT plants by trehalose could be overcome by bypassing the need for starch breakdown through continuous light. Partial effects were observed with long day conditions (16 h/8 h light/dark regime). However continuous light could not overcome the effects of trehalose on gene expression (At1G10760 At4G17090 At5G16150) or starch accumulation in the cotyledons.,Increased susceptibility to P. irregulare compared with the wild type.,Double mutants were indistinguishable from bps1 single mutants. Germination insensitive to ABA-R. Finkelstein-1998 FUNCTION: Transcription regulator that probably binds to the GCC-box pathogenesis-related promoter element. Binds also to the S-box (5'-CACTTCCA-3') photosynthesis-associated nuclear genes-related (PhANGs-related) promoter element, and thus acts as a transcription inhibitor. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. May have a function in the deetiolation process. Confers sensitivity to abscisic acid (ABA), and regulates the ABA signaling pathway during seed germination, upon nitrate-mediated lateral root inhibition, in hexokinase-dependent sugar responses (including feed-back regulation of photosynthesis and mobilization of storage lipid during germination), and in response to osmotic stress mediated by NaCl, KCl or mannitol. Plays a role in sucrose sensing or signaling, especially at low fluence far red light. Also involved in plant response to glucose treatment, especially at low concentration and in young seedlings. Required for the trehalose-mediated root inhibition and starch accumulation in cotyledons, probably by inhibiting starch breakdown. However, seems to not be involved in sugar-mediated senescence. Required for the ABA-dependent beta-amino-butyric acid (BABA) signaling pathway. BABA primes ABA synthesis and promotes resistance to drought and salt, and leads to a prime callose accumulation that confers resistance against necrotrophic pathogens such as A.brassicicola and P.cucumerina. Seems to be involved in resistance to S.sclerotiorum probably by regulating the ABA-mediated stomatal closure apparently by antagonistic interaction with oxalate. Negative regulator of low water potential-induced Pro accumulation whose effect is decreased by high levels of sugar. {ECO:0000269|PubMed:10629000, ECO:0000269|PubMed:10950871, ECO:0000269|PubMed:10972884, ECO:0000269|PubMed:10972885, ECO:0000269|PubMed:11115891, ECO:0000269|PubMed:11172073, ECO:0000269|PubMed:11439129, ECO:0000269|PubMed:11851911, ECO:0000269|PubMed:11996676, ECO:0000269|PubMed:12136027, ECO:0000269|PubMed:12529517, ECO:0000269|PubMed:12857824, ECO:0000269|PubMed:15053765, ECO:0000269|PubMed:15118859, ECO:0000269|PubMed:15502012, ECO:0000269|PubMed:16098105, ECO:0000269|PubMed:16113213, ECO:0000269|PubMed:16339784, ECO:0000269|PubMed:16844907, ECO:0000269|PubMed:17031512, ECO:0000269|PubMed:9144963, ECO:0000269|PubMed:9418043, ECO:0000269|PubMed:9634591}. MISCELLANEOUS: 'Salobreno' means 'salty land' in Spanish. Plants lacking ABI4 are salt tolerant. 35671 Ethylene-responsive transcription factor ABI4 (ERF ABI4) (Protein ABSCISIC ACID INSENSITIVE 4) (Protein GLUCOSE INSENSITIVE 6) (Protein IMPAIRED SUCROSE INDUCTION 3) (Protein SALOBRENO 5) (Protein SUCROSE UNCOUPLED 6) (Protein SUGAR INSENSITIVE 5) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; lateral root development [GO:0048527]; mitochondria-nucleus signaling pathway [GO:0031930]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of protein localization [GO:0032880]; regulation of stomatal movement [GO:0010119]; regulation of triglyceride catabolic process [GO:0010896]; response to glucose [GO:0009749]; response to osmotic stress [GO:0006970]; response to sucrose [GO:0009744]; response to trehalose [GO:0010353]; response to water deprivation [GO:0009414]; root meristem growth [GO:0010449]; seed development [GO:0048316]; starch catabolic process [GO:0005983]; sugar mediated signaling pathway [GO:0010182]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Levels increase in embryos from globular stage onward during seed maturation. In seedlings, levels in cotyledons and hypocotyls decrease progressively to disappear 3 days after germination, except after glucose treatment that makes levels constant. {ECO:0000269|PubMed:11115891, ECO:0000269|PubMed:12970489}. TISSUE SPECIFICITY: In seeds, mostly in embryo, and seedlings, especially in vascular tissues. Confined to the hypocotyl, cotyledons, the root cap, and the root quiescent center. {ECO:0000269|PubMed:11115891, ECO:0000269|PubMed:12970489, ECO:0000269|PubMed:16844907, ECO:0000269|PubMed:9634591}. locus:2005490; AT2G40220 Transcription factor Ethylene-responsive transcription factor ABI4 (ERF ABI4) (Protein ABI4 homolog) (OsABI4) C7J2Z1 ABI4_ORYSJ ABI4 ERF117 Os05g0351200 LOC_Os05g28350 OSJNBa0077J17.14 FUNCTION: Probable transcription regulator that binds to cis-responsive elements of genes involved in stress response. {ECO:0000250}. ENOG411E5CI RKD1 Q9M9U9 RKD1_ARATH Protein RKD1 (AtRKD1) (RWP-RK domain-containing protein 1) FUNCTION: Putative transcription factor. {ECO:0000250}. 30638 Protein RKD1 (AtRKD1) (RWP-RK domain-containing protein 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of cell division [GO:0051302]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2035000; AT1G18790 RWP-RK domain-containing protein Os06g0228950 protein A0A0P0WU77 A0A0P0WU77_ORYSJ Os06g0228950 OSNPB_060228950 ENOG411E5CH PCR7,PCR6 Q9LS43,Q9M9A5 PCR7_ARATH,PCR6_ARATH Protein PLANT CADMIUM RESISTANCE 7 (AtPCR7),Protein PLANT CADMIUM RESISTANCE 6 (AtPCR6) FUNCTION: May be involved in heavy metals transport. {ECO:0000250}. 14718,24875 Protein PLANT CADMIUM RESISTANCE 7 (AtPCR7),Protein PLANT CADMIUM RESISTANCE 6 (AtPCR6) integral component of membrane [GO:0016021] locus:2095002;,locus:2028526; AT3G18470,AT1G49030 PLAC8 family NA NA NA NA NA NA NA ENOG411E4K1 Q9LR39 Q9LR39_ARATH Dynein light chain type 1 family protein (F26F24.7) (Putative dynein light subunit lc6, flagellar outer arm) 14722 Dynein light chain type 1 family protein (F26F24.7) (Putative dynein light subunit lc6, flagellar outer arm) cytoplasmic dynein complex [GO:0005868]; cytoskeletal protein binding [GO:0008092]; dynein intermediate chain binding [GO:0045505]; dynein light intermediate chain binding [GO:0051959]; cilium assembly [GO:0060271]; positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [GO:2000582]; transport along microtubule [GO:0010970] locus:2028045; AT1G23220 Dynein light chain type 1 family protein Os04g0462600 protein (cDNA clone:002-176-C06, full insert sequence),Os02g0580400 protein (Putative dynein light chain 2) (cDNA clone:J033117I07, full insert sequence) Q0JCL9,Q6EP41 Q0JCL9_ORYSJ,Q6EP41_ORYSJ Os04g0462600 Os04g0462600 OsJ_15075 OSNPB_040462600,Os02g0580400 B1267B06.31 OJ1115_A05.6 OSNPB_020580400 ENOG411EKHE F4HUG8 F4HUG8_ARATH Ribosomal L18p/L5e family protein 19103 Ribosomal L18p/L5e family protein ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504956217; AT1G14205 Ribosomal L18p/L5e family 50S ribosomal protein L18, chloroplast, putative, expressed (Os03g0169400 protein) (Putative ribosomal protein),Os09g0439050 protein Q8S7V9,A0A0P0XML6 Q8S7V9_ORYSJ,A0A0P0XML6_ORYSJ OSJNBa0091P11.9 LOC_Os03g07340 Os03g0169400 OsJ_09570 OSNPB_030169400,Os09g0439050 OSNPB_090439050 ENOG411EKH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKH6 GT-1 Q9FX53,A0A1P8ATI8 TGT1_ARATH,A0A1P8ATI8_ARATH Trihelix transcription factor GT-1 (Trihelix DNA-binding protein GT-1),Homeodomain-like superfamily protein FUNCTION: Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. 46676,26541 Trihelix transcription factor GT-1 (Trihelix DNA-binding protein GT-1),Homeodomain-like superfamily protein nucleus [GO:0005634]; identical protein binding [GO:0042802]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2009897; AT1G13450 DNA binding protein GT-1 NA NA NA NA NA NA NA ENOG411EKH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0560600 protein (Putative 6b-interacting protein 1) (cDNA clone:J013124K11, full insert sequence) (cDNA clone:J033124C04, full insert sequence) Q688Y5 Q688Y5_ORYSJ Os05g0560600 OJ1115_B06.8 OsJ_19530 OSNPB_050560600 ENOG411EJUX O65680 O65680_ARATH At4g34550 (F-box protein) (Uncharacterized protein AT4g34550) (Uncharacterized protein T4L20.130) 31499 At4g34550 (F-box protein) (Uncharacterized protein AT4g34550) (Uncharacterized protein T4L20.130) locus:2139509; AT4G34550 NA NA NA NA NA NA NA NA ENOG411DXCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A17 (Alpha-expansin-17) (OsEXP17) (OsEXPA17) (OsaEXPa1.31),Os06g0108600 protein (Fragment) Q4PR49,A0A0N7KLE2 EXP17_ORYSJ,A0A0N7KLE2_ORYSJ EXPA17 EXP17 Os06g0108600 LOC_Os06g01920 P0514G12.20,Os06g0108600 OSNPB_060108600 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DXCW Q5XV34 Q5XV34_ARATH Exosome complex exonuclease 48922 Exosome complex exonuclease exonuclease activity [GO:0004527] locus:2179489; AT5G25500 NA Expressed protein (Os11g0207300 protein) Q2R935 Q2R935_ORYSJ LOC_Os11g10110 Os11g0207300 OsJ_33309 OSNPB_110207300 ENOG411DXCI AR401 Q9C9M1 Q9C9M1_ARATH Protein-lysine N-methyltransferase At1g66680 (EC 2.1.1.-) FUNCTION: S-adenosyl-L-methionine-dependent protein-lysine N-methyltransferase that methylates elongation factor 1-alpha. {ECO:0000256|HAMAP-Rule:MF_03188}. R-ATH-8876725; 2.1.1.- 39229 Protein-lysine N-methyltransferase At1g66680 (EC 2.1.1.-) cytosol [GO:0005829]; nucleus [GO:0005634]; protein-lysine N-methyltransferase activity [GO:0016279] locus:2033329; AT1G66680 Methyltransferase-like protein Os01g0686400 protein (Fragment) Q0JKA8 Q0JKA8_ORYSJ Os01g0686400 Os01g0686400 OSNPB_010686400 ENOG411DXCJ Q9LFT3,F4IAQ0 Q9LFT3_ARATH,F4IAQ0_ARATH Glycosyl hydrolase family 81 protein (Uncharacterized protein F1N13_10),Glycosyl hydrolase family 81 protein ARA:AT5G15870-MONOMER; 82873,73024 Glycosyl hydrolase family 81 protein (Uncharacterized protein F1N13_10),Glycosyl hydrolase family 81 protein glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group [GO:0052861] locus:2146042;,locus:2014149; AT5G15870,AT1G18310 Glycosyl hydrolase family 81 protein Os09g0379900 protein (Putative beta-glucan binding protein) Q6H5B5 Q6H5B5_ORYSJ Os09g0379900 OSNPB_090379900 P0027G10.24 ENOG411E1X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GMC oxidoreductase Os10g0475100 protein,Os10g0474100 protein (Fragment),Os10g0474800 protein (Fragment) A0A0P0XVN3,A0A0P0XVX1,A0A0P0XV74 A0A0P0XVN3_ORYSJ,A0A0P0XVX1_ORYSJ,A0A0P0XV74_ORYSJ Os10g0475100 OSNPB_100475100,Os10g0474100 OSNPB_100474100,Os10g0474800 OSNPB_100474800 ENOG411E1X7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0525400 protein (cDNA clone:006-202-G09, full insert sequence) (cDNA clone:J013059J01, full insert sequence) Q651M5 Q651M5_ORYSJ Os09g0525400 OJ1439_F07.2 OsJ_30060 OSJNBa0047P18.30 OSNPB_090525400 ENOG411E1X4 GRF3 Q9SJR5 GRF3_ARATH Growth-regulating factor 3 (AtGRF3) (Transcription activator GRF3) FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. 43707 Growth-regulating factor 3 (AtGRF3) (Transcription activator GRF3) nucleus [GO:0005634]; ATP binding [GO:0005524]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]; negative regulation of cell proliferation [GO:0008285]; regulation of nematode larval development [GO:0061062]; regulation of transcription, DNA-templated [GO:0006355]; response to nematode [GO:0009624]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. locus:2044873; AT2G36400 growth-regulating factor NA NA NA NA NA NA NA ENOG411E1X5 Q6E238 Q6E238_ARATH Zinc finger RNA-binding-like protein 16614 Zinc finger RNA-binding-like protein locus:2093797; AT3G29330 ZnF_U1 Expressed protein (Os10g0324600 protein) Q7XFT9 Q7XFT9_ORYSJ Os10g0324600 LOC_Os10g17740 Os10g0324600 OSNPB_100324600 ENOG411E1X2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) Os06g0326000 protein (Putative AT-hook DNA-binding protein) Q69T83 Q69T83_ORYSJ Os06g0326000 OSNPB_060326000 P0652D10.26 ENOG411E1X3 A0A1P8B412,Q9SU31,A0A1P8B435,A0A1P8B408 A0A1P8B412_ARATH,Q9SU31_ARATH,A0A1P8B435_ARATH,A0A1P8B408_ARATH Uncharacterized protein,Uncharacterized protein AT4g12540 49979,52065,49010,49217 Uncharacterized protein,Uncharacterized protein AT4g12540 locus:2135585; AT4G12540 NA Os05g0532500 protein (cDNA, clone: J065196H20, full insert sequence) B7F8Z2 B7F8Z2_ORYSJ Os05g0532500 OSNPB_050532500 ENOG411E1X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7) C7IZT8 C7IZT8_ORYSJ Os03g0339400 OSNPB_030339400 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411E1X1 PCMP-E25 Q680Z7 PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220, mitochondrial 57134 Pentatricopeptide repeat-containing protein At1g09220, mitochondrial cytosolic ribosome [GO:0022626]; intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2195321; AT1G09220 Pentatricopeptide repeat-containing protein At1g09220 NA NA NA NA NA NA NA ENOG411E1X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0269700 protein,Os01g0269500 protein (Fragment),Os01g0269800 protein,Os01g0269600 protein A0A0P0V0T8,A0A0P0V0Z7,A0A0P0V108,A0A0P0V169 A0A0P0V0T8_ORYSJ,A0A0P0V0Z7_ORYSJ,A0A0P0V108_ORYSJ,A0A0P0V169_ORYSJ Os01g0269700 OSNPB_010269700,Os01g0269500 OSNPB_010269500,Os01g0269800 OSNPB_010269800,Os01g0269600 OSNPB_010269600 ENOG411E1X9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box kelch-repeat protein NA NA NA NA NA NA NA ENOG411E1XF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3133) Os05g0586400 protein Q6L5C9 Q6L5C9_ORYSJ Os05g0586400 OJ1007_H05.1 OsJ_19716 OSNPB_050586400 ENOG411E1XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0438300 protein,Os04g0412150 protein A0A0P0XV27,A0A0N7KJ11 A0A0P0XV27_ORYSJ,A0A0N7KJ11_ORYSJ Os10g0438300 OSNPB_100438300,Os04g0412150 OSNPB_040412150 ENOG411E1XD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA multicellular organismal development Transcription factor PCF7,Os01g0755500 protein (Fragment),Os01g0304200 protein (Fragment) Q8LT05,A0A0P0V8B1,A0A0P0V1T2 PCF7_ORYSJ,A0A0P0V8B1_ORYSJ,A0A0P0V1T2_ORYSJ PCF7 Os01g0755500 LOC_Os01g55100 OsJ_03497 P0503C12.34,Os01g0755500 OSNPB_010755500,Os01g0304200 OSNPB_010304200 FUNCTION: Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. ENOG411E1XE Q9C8J6 PLA17_ARATH Phospholipase A1-Igamma3, chloroplastic (EC 3.1.1.-) DISRUPTION PHENOTYPE: No visible phenotype under standard growth phenotype. {ECO:0000269|PubMed:20348210}. FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine at the sn-1 position. Moderate activity toward phosphatidylcholine (PC), monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG) and triacylglycerol (TAG). {ECO:0000269|PubMed:19527719}. ARA:AT1G51440-MONOMER; 3.1.1.- 60321 Phospholipase A1-Igamma3, chloroplastic (EC 3.1.1.-) chloroplast [GO:0009507]; galactolipase activity [GO:0047714]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; triglyceride lipase activity [GO:0004806]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Highly expressed in flowers. Lower levels in seedlings, leaves and stems. {ECO:0000269|PubMed:19527719}. locus:2033959; AT1G51440 Lipase (class 3) NA NA NA NA NA NA NA ENOG411E1XB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH Os01g0818300 protein (Putative QUAKING isoform 5) (cDNA clone:001-113-C02, full insert sequence) Q5QMM5 Q5QMM5_ORYSJ Os01g0818300 OSNPB_010818300 P0454H12.28 ENOG411E1XC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatidylcholine 1-acylhydrolase activity Phospholipase A1-II 2 (EC 3.1.1.-),Os01g0651200 protein (Fragment) Q0JKT4,A0A0P0V620 PLA2_ORYSJ,A0A0P0V620_ORYSJ Os01g0651200 LOC_Os01g46250 OJ1159_D09.22 OsJ_02837,Os01g0651200 OSNPB_010651200 FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ENOG411E1XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0326 protein At4g17486-like NA NA NA NA NA NA NA ENOG411E1XN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA fatty-acyl-CoA synthase activity 4-coumarate--CoA ligase-like 7 (EC 6.2.1.-) Q69RG7 4CLL7_ORYSJ 4CLL7 Os07g0280200 LOC_Os07g17970 P0474B11.33 ENOG411E1XM F4ITY4 F4ITY4_ARATH Ubiquitin-conjugating enzyme/RWD-like protein 38131 Ubiquitin-conjugating enzyme/RWD-like protein cellular protein modification process [GO:0006464]; protein transport [GO:0015031] locus:2040394; AT2G38830 UEV domain NA NA NA NA NA NA NA ENOG411E1XJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os08g0550400 protein (Putative NEP1-interacting protein) (cDNA clone:001-118-F06, full insert sequence) Q6ZJI1 Q6ZJI1_ORYSJ Os08g0550400 Os08g0550400 OJ1479_B11.22 OsJ_28199 OSNPB_080550400 ENOG411E1XK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: 6-phosphogluconolactonase Probable 6-phosphogluconolactonase 1 (6PGL 1) (EC 3.1.1.31) Q75IV7 6PGL1_ORYSJ Os03g0416500 LOC_Os03g30300 OsJ_010814 OSJNBb0059G13.23 FUNCTION: Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. {ECO:0000250}. ENOG411E1XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Casein kinase 1 (OsCKI1) (EC 2.7.11.1) (Protein HYBRID BREAKDOWN 2) (Protein LOW TEMPERATURE GROWTH 1),OSJNBb0070J16.10 protein (OSJNBb0072M01.6 protein) (Os04g0514800 protein) (cDNA clone:001-026-B12, full insert sequence) Q6K9N1,Q7X6X9 CKI1_ORYSJ,Q7X6X9_ORYSJ CKI1 HBD2 LTG1 Os02g0622100 LOC_Os02g40860 OJ1234_B11.27 OsJ_07571,Os04g0514800 Os04g0514800 OsJ_15454 OSJNBb0070J16.10 OSJNBb0072M01.6 OSNPB_040514800 FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Can phosphorylate casein in vitro. Required for normal root development through modulation of cell elongation. Plants silencing CKI1 show abnormal root development, with reduced number of lateral and adventitious roots, and shortened primary roots as a result of reduced cell elongation. May be involved in abscisic acid (ABA) and brassinosteroid (BR) signaling pathways (PubMed:14535884). Plays an important role in the adaptive growth and fitness under low temperature (LT) conditions. May confer tolerance to LT through an auxin-dependent process (PubMed:24635058). {ECO:0000269|PubMed:14535884, ECO:0000269|PubMed:24635058}. ENOG411E1XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CW-type Zinc Finger Os06g0702100 protein A3BF50 A3BF50_ORYSJ Os06g0702100 OsJ_22540 OSNPB_060702100 ENOG411E1XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0133166 protein Q8H892 Q8H892_ORYSJ OSJNBb0004A06.18 Os10g0133166 LOC_Os10g04380 OsJ_30627 OSJNBa0013J21.5 OSNPB_100133166 ENOG411E1XW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 7 (OsPP2C07) (EC 3.1.3.16),Os01g0618200 protein (Protein phosphatase 2C-like) Q0JL75,Q5ZBH7 P2C07_ORYSJ,Q5ZBH7_ORYSJ Os01g0618200 LOC_Os01g43100,Os01g0618200 Os01g0618200 B1040D09.2 OSNPB_010618200 ENOG411E1XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/calcium exchanger protein Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger 1c) (OsCAX1c) Q5KTQ9 CAX1C_ORYSJ CAX1c Os02g0314300 Os02g0314400 Os02g0314100 LOC_Os02g21009 P0705A04.26 FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase. {ECO:0000269|PubMed:16043430}. ENOG411E1XU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0549600 protein Q69MN7 Q69MN7_ORYSJ Os09g0549600 Os09g0549600 OJ1210_A07.21 OsJ_30242 OSNPB_090549600 P0489D11.2 ENOG411E1XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain DnaJ protein family-like protein (Os07g0124800 protein) Q7EYQ4 Q7EYQ4_ORYSJ P0474G09.120 Os07g0124800 OsJ_22949 OSNPB_070124800 ENOG411E1XS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 93G2 (EC 1.14.13.-) (Flavanone 2-hydroxylase) (OsF2H) Q5VRI5 C93G2_ORYSJ CYP93G2 Os06g0102100 LOC_Os06g01250 OSJNBa0075G19.13 FUNCTION: Functions as flavanone 2-hydroxylase that catalyzes the direct conversion of flavanones to 2-hydroxyflavanones. In vitro, can convert naringenin and eriodictyol to the corresponding 2-hydroxyflavanones. Generates 2-hydroxyflavanone substrates for C-glycosylflavone biosynthesis by the glycosyltransferase CGT. {ECO:0000269|PubMed:20647377}. ENOG411E1XP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E1XQ Q9LEU1 Q9LEU1_ARATH AT5g11000/T30N20_270 (Uncharacterized protein T30N20_270) 43043 AT5g11000/T30N20_270 (Uncharacterized protein T30N20_270) plasma membrane [GO:0005886] locus:2183820; AT5G11000 Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411E1XZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hexokinase Hexokinase-9 (EC 2.7.1.1) (Hexokinase-5),Hexokinase-2 (EC 2.7.1.1) (Hexokinase-3),Phosphotransferase (EC 2.7.1.-) Q2KNB7,Q2KNB9,Q0JJR2,Q0DGH2 HXK9_ORYSJ,HXK2_ORYSJ,Q0JJR2_ORYSJ,Q0DGH2_ORYSJ HXK9 HXK5 Os01g0722700 LOC_Os01g52450 P0690B02.34,HXK2 HXK3 Os05g0532600 LOC_Os05g45590 OSJNBa0053E05.8,Os01g0722700 Os01g0722700 OSNPB_010722700,Os05g0532600 Os05g0532600 OSNPB_050532600 FUNCTION: Fructose and glucose phosphorylating enzyme. May be involved in the phosphorylation of glucose during the export from plastids to cytosol (By similarity). {ECO:0000250, ECO:0000269|PubMed:16552590}.,FUNCTION: Fructose and glucose phosphorylating enzyme. {ECO:0000269|PubMed:16552590}. ENOG411E1XX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-locus glycoprotein family Os11g0149900 protein (PAN domain containing protein) (S-receptor kinase-like protein, putative) Q53PX8 Q53PX8_ORYSJ Os11g0149900 LOC_Os11g05240 Os11g0149900 OsJ_32980 OSNPB_110149900 ENOG411E1XY WAKL15 Q9M342 WAKLP_ARATH Wall-associated receptor kinase-like 15 (EC 2.7.11.-) FUNCTION: Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. 2.7.11.- 70690 Wall-associated receptor kinase-like 15 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2084425; AT3G53840 STYKc NA NA NA NA NA NA NA ENOG411EFAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAP2 superfamily NA NA NA NA NA NA NA ENOG411EBJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3336) NA NA NA NA NA NA NA ENOG411EBJY CPK25 Q9SJ61 CDPKP_ARATH Calcium-dependent protein kinase 25 (EC 2.7.11.1) FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 58852 Calcium-dependent protein kinase 25 (EC 2.7.11.1) cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2039215; AT2G35890 calcium-dependent protein kinase 25 NA NA NA NA NA NA NA ENOG411EBJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YT521-B-like domain NA NA NA NA NA NA NA ENOG411EBJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411EBJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os06g0609500 protein (Putative transfactor) (cDNA clone:J023114F03, full insert sequence) Q69V46 Q69V46_ORYSJ Os06g0609500 Os06g0609500 OSNPB_060609500 P0490F09.5 P0556B08.32 ENOG411EBJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411EBJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EBJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBJV RABG1,RABG2,RAB7A Q948K6,Q9SJ11,A0A1P8AXJ0 RABG1_ARATH,RABG2_ARATH,A0A1P8AXJ0_ARATH Ras-related protein RABG1 (AtRABG1) (Ras-related protein Rab78) (AtRab78),Ras-related protein RABG2 (AtRABG2) (Ras-related protein Rab77) (AtRab77) (Ras-related protein Rab7a) (AtRab7a),RAB GTPase homolog 7A FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-6798695;R-ATH-8854214;,R-ATH-6798695;R-ATH-8854214;R-ATH-8876198; 23496,23826,21199 Ras-related protein RABG1 (AtRABG1) (Ras-related protein Rab78) (AtRab78),Ras-related protein RABG2 (AtRABG2) (Ras-related protein Rab77) (AtRab77) (Ras-related protein Rab7a) (AtRab7a),RAB GTPase homolog 7A plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2164905;,locus:2052479; AT5G39620,AT2G21880 RAB NA NA NA NA NA NA NA ENOG411EBJU BSK10 Q9LFD0,A0A1P8BE32,A0A1P8BE40 Q9LFD0_ARATH,A0A1P8BE32_ARATH,A0A1P8BE40_ARATH Kinase with tetratricopeptide repeat domain-containing protein (Uncharacterized protein F7J8_40),Kinase with tetratricopeptide repeat domain-containing protein 56544,39844,43168 Kinase with tetratricopeptide repeat domain-containing protein (Uncharacterized protein F7J8_40),Kinase with tetratricopeptide repeat domain-containing protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2150074; AT5G01060 STYKc NA NA NA NA NA NA NA ENOG411EBJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-box protein F-box protein family-like (Os01g0812200 protein) (cDNA clone:001-032-H05, full insert sequence) (cDNA clone:J023131F07, full insert sequence) Q5VQR7 Q5VQR7_ORYSJ Os01g0812200 Os01g0812200 OsJ_03835 OSNPB_010812200 P0425G02.24 ENOG411EBJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G_patch NA NA NA NA NA NA NA ENOG411EBJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EBJI PUP6 O49722 PUP6_ARATH Probable purine permease 6 (AtPUP6) 42960 Probable purine permease 6 (AtPUP6) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863] locus:2141887; AT4G18190 Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411EBJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1336) NA NA NA NA NA NA NA ENOG411EBJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinesterase NA NA NA NA NA NA NA ENOG411EBJC MAB16.8 Q9LVY4 Q9LVY4_ARATH Cytochrome P450 superfamily protein (Similarity to cytochrome P450) ARA:AT5G36130-MONOMER; R-ATH-211916;R-ATH-5365859; 16241 Cytochrome P450 superfamily protein (Similarity to cytochrome P450) heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] locus:2158911; AT5G36130 cytochrome P450 NA NA NA NA NA NA NA ENOG411EBJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os06g0140300 protein (Putative HcrVf3 protein) (cDNA clone:J023084A02, full insert sequence),Os06g0140200 protein (Putative HcrVf3 protein),Os08g0541300 protein (Putative HcrVf3 protein) Q5VPE6,Q5VPE8,Q6ZIU0 Q5VPE6_ORYSJ,Q5VPE8_ORYSJ,Q6ZIU0_ORYSJ Os06g0140300 OsJ_20066 OSJNBa0041F13.40 OSNPB_060140300,OSJNBa0041F13.38 Os06g0140200 OSNPB_060140200,Os08g0541300 Os08g0541300 OJ1211_G06.15 OsJ_28129 OSNPB_080541300 ENOG411EBJA Q9FID8,Q9FID9 Y5900_ARATH,Y5389_ARATH Putative receptor-like protein kinase At5g39000 (EC 2.7.11.-),Probable receptor-like protein kinase At5g38990 (EC 2.7.11.-) 2.7.11.- 97164,97953 Putative receptor-like protein kinase At5g39000 (EC 2.7.11.-),Probable receptor-like protein kinase At5g38990 (EC 2.7.11.-) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2177202;,locus:2152312; AT5G39000,AT5G38990 AT5G39000 (E 0.0) protein kinase family protein NA NA NA NA NA NA NA ENOG411EBJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EBJF MZF18.8 Q9FLV8,A0A1P8BDL9,F4KFP5 FK112_ARATH,A0A1P8BDL9_ARATH,F4KFP5_ARATH Putative F-box/kelch-repeat protein At5g24040,F-box SKIP23-like protein (DUF295) 43795,33830,25375 Putative F-box/kelch-repeat protein At5g24040,F-box SKIP23-like protein (DUF295) chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; double-strand break repair via homologous recombination [GO:0000724] locus:2178727; AT5G24040 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EBJE UMAMIT6 F4J9A3,A0A1I9LQZ0,A0A1I9LQY9 WTR26_ARATH,A0A1I9LQZ0_ARATH,A0A1I9LQY9_ARATH WAT1-related protein At3g53210,WAT1-related protein 40805,34512,29420 WAT1-related protein At3g53210,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2102028; AT3G53210 Nodulin MtN21 NA NA NA NA NA NA NA ENOG411EBJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein Os11g0481000 protein A0A0P0Y289 A0A0P0Y289_ORYSJ Os11g0481000 OSNPB_110481000 ENOG411EBJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoadenosine phosphosulfate reductase family NA NA NA NA NA NA NA ENOG411EBJ2 MED15C Q9SHV7 MD15C_ARATH Probable mediator of RNA polymerase II transcription subunit 15c FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. 105506 Probable mediator of RNA polymerase II transcription subunit 15c nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; transcription cofactor activity [GO:0003712]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2039871; AT2G10440 NA NA NA NA NA NA NA NA ENOG411EBJ1 Q9MA89 Q9MA89_ARATH Cytidine/deoxycytidylate deaminase family protein (T12H1.27 protein) 12582 Cytidine/deoxycytidylate deaminase family protein (T12H1.27 protein) cytosol [GO:0005829]; guanosine deaminase activity [GO:0047974]; tRNA-specific adenosine deaminase activity [GO:0008251]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451]; tRNA wobble adenosine to inosine editing [GO:0002100] locus:2096354; AT3G05300 Cytidine and deoxycytidylate deaminase zinc-binding region NA NA NA NA NA NA NA ENOG411EBJ0 O65371 O65371_ARATH At1g12070 (F12F1.5 protein) (Immunoglobulin E-set superfamily protein) (Rho GDP-dissociation inhibitor 2b) R-ATH-194840; 25457 At1g12070 (F12F1.5 protein) (Immunoglobulin E-set superfamily protein) (Rho GDP-dissociation inhibitor 2b) cytoplasm [GO:0005737]; Rho GDP-dissociation inhibitor activity [GO:0005094] locus:2008965; AT1G12070 Rho GDP-dissociation inhibitor family protein NA NA NA NA NA NA NA ENOG411EBJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EBJ6 F26O13.210 Q9SCZ2,A0A1I9LRR8 Q9SCZ2_ARATH,A0A1I9LRR8_ARATH Disease resistance protein (TIR-NBS-LRR class) family (Propable disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family 139970,136755 Disease resistance protein (TIR-NBS-LRR class) family (Propable disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family membrane [GO:0016020]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2081810; AT3G51570 Disease resistance protein NA NA NA NA NA NA NA ENOG411EBJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: integrator complex subunit 8 NA NA NA NA NA NA NA ENOG411EBJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3444) NA NA NA NA NA NA NA ENOG411E85T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E85U Q9LPW6 Q9LPW6_ARATH F13K23.8 protein (Nucleolin) 23614 F13K23.8 protein (Nucleolin) mitochondrial respiratory chain complex III [GO:0005750]; aerobic respiration [GO:0009060]; hydrogen ion transmembrane transport [GO:1902600]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122] locus:2010376; AT1G12830 NA NA NA NA NA NA NA NA ENOG411E85V Q93ZQ2 Q93ZQ2_ARATH At3g60110/T2O9_90 (DNA-binding bromodomain-containing protein) 72046 At3g60110/T2O9_90 (DNA-binding bromodomain-containing protein) DNA binding [GO:0003677] locus:2101477; AT3G60110 BROMO NA NA NA NA NA NA NA ENOG411E85W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E85P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E85R COPT1 Q39065 COPT1_ARATH Copper transporter 1 (AtCOPT1) DISRUPTION PHENOTYPE: Increased root length and pollen development defects. {ECO:0000269|PubMed:14726516}. FUNCTION: Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development. {ECO:0000269|PubMed:12650623, ECO:0000269|PubMed:14726516, ECO:0000269|PubMed:7499355}. MISCELLANEOUS: The increased root length and pollen development defects phenotypes of the mutants are completely and specifically reversed by copper addition. 18399 Copper transporter 1 (AtCOPT1) integral component of membrane [GO:0016021]; membrane [GO:0016020]; copper ion transmembrane transporter activity [GO:0005375]; copper ion transport [GO:0006825]; pollen sperm cell differentiation [GO:0048235]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed in the root apex, lateral root primordia, embryo, trichomes, guard cells and pollen grains. {ECO:0000269|PubMed:12650623, ECO:0000269|PubMed:14726516}. locus:2153306; AT5G59030 Ctr copper transporter family NA NA NA NA NA NA NA ENOG411E85S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E85X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0171700 protein (cDNA, clone: J013056B06, full insert sequence) (cDNA, clone: J080069K01, full insert sequence) B7F890 B7F890_ORYSJ Os08g0171700 OsJ_26209 OSNPB_080171700 ENOG411E85Y Q56ZA1 Q56ZA1_ARATH At1g74055 (Transmembrane protein) (Uncharacterized protein At1g74055) 15385 At1g74055 (Transmembrane protein) (Uncharacterized protein At1g74055) integral component of membrane [GO:0016021] locus:505006223; AT1G74055 NA NA NA NA NA NA NA NA ENOG411E85Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0573200 protein A0A0P0X828 A0A0P0X828_ORYSJ Os07g0573200 OSNPB_070573200 ENOG411E85D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein NA NA NA NA NA NA NA ENOG411E85E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0011F23.14 protein (OSJNBa0015K02.1 protein) (Os04g0659000 protein) (cDNA clone:001-111-B06, full insert sequence) Q8S3P6 Q8S3P6_ORYSJ 24K23.11 Os04g0659000 OsJ_16480 OSJNBa0011F23.14 OSJNBa0015K02.1 OSNPB_040659000 ENOG411E85F LTP13 A8MQA2 NLTPD_ARATH Non-specific lipid-transfer protein 13 (LTP 13) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 14500 Non-specific lipid-transfer protein 13 (LTP 13) membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:4010714038; AT5G44265 NA NA NA NA NA NA NA NA ENOG411E85G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Zinc finger protein NA NA NA NA NA NA NA ENOG411E85A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0236900 protein A0A0N7KGW5 A0A0N7KGW5_ORYSJ Os03g0236900 OSNPB_030236900 ENOG411E85B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411E85C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family Os10g0112100 protein (cDNA clone:002-143-F03, full insert sequence),Os06g0520733 protein (Fragment) Q33BF6,A0A0P0WXH6 Q33BF6_ORYSJ,A0A0P0WXH6_ORYSJ LOC_Os10g02300 Os10g0112100 OSNPB_100112100,Os06g0520733 OSNPB_060520733 ENOG411E85M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0726700 protein (Fragment) A0A0P0W2J9 A0A0P0W2J9_ORYSJ Os03g0726700 OSNPB_030726700 ENOG411E85I Q9ZWC0 Q9ZWC0_ARATH F21M11.6 protein (Uncharacterized protein At1g04000) 16853 F21M11.6 protein (Uncharacterized protein At1g04000) seed development [GO:0048316] locus:2024137; AT1G04000 NA NA NA NA NA NA NA NA ENOG411E85J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Sodium hydrogen exchanger NA NA NA NA NA NA NA ENOG411E85K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E855 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mpv17 / PMP22 family NA NA NA NA NA NA NA ENOG411E856 F4IT95,F4IT96 F4IT95_ARATH,F4IT96_ARATH Suppressor SRP40-like protein 34201,21726 Suppressor SRP40-like protein locus:2044269; AT2G03630 NA NA NA NA NA NA NA NA ENOG411E857 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0146750 protein,Os12g0143750 protein (Fragment),Os12g0134800 protein (Zinc finger, C3HC4 type family protein),Os11g0137666 protein (Os11g0138275 protein) (Zinc finger, C3HC4 type family protein) B9G9E1,C7J9F4,Q2QY25,Q2RAT8 B9G9E1_ORYSJ,C7J9F4_ORYSJ,Q2QY25_ORYSJ,Q2RAT8_ORYSJ Os11g0146750 OsJ_32954 OSNPB_110146750,Os12g0143750 Os12g0143750 OSNPB_120143750,Os12g0134800 LOC_Os12g04090 OsJ_36622 OSNPB_120134800,Os11g0137666 Os11g0138275 LOC_Os11g04280 LOC_Os11g04281 OsJ_32893 OsJ_32896 OSNPB_110137666 OSNPB_110138275 ENOG411E851 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0619300 protein B9F146 B9F146_ORYSJ Os02g0619300 OsJ_07555 OSNPB_020619300 ENOG411E852 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: coiled-coil domain containing 96 NA NA NA NA NA NA NA ENOG411E853 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os12g0635400 protein C7JA34 C7JA34_ORYSJ Os12g0635400 Os12g0635400 OSNPB_120635400 ENOG411E858 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protein of unknown function (DUF677) NA NA NA NA NA NA NA ENOG411E859 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0127800 protein (cDNA clone:002-144-E01, full insert sequence) Q0J895 Q0J895_ORYSJ Os08g0127800 Os08g0127800 OSNPB_080127800 ENOG411EFAV JAL15 F4I9R6 JA15S_ARATH Jacalin-related lectin 15 (Protein JACALIN-TYPE LECTIN REQUIRED FOR POTEXVIRUS RESISTANCE1) 14399 Jacalin-related lectin 15 (Protein JACALIN-TYPE LECTIN REQUIRED FOR POTEXVIRUS RESISTANCE1) carbohydrate binding [GO:0030246] TISSUE SPECIFICITY: Expressed in the vascular and surrounding tissues in cotyledons. Detected in root apical meristems. {ECO:0000269|PubMed:22307853}. locus:2196271; AT1G58160 Jacalin lectin family protein NA NA NA NA NA NA NA ENOG411DY9B Q5XET6,A0A1P8AR17 PUS3_ARATH,A0A1P8AR17_ARATH RNA pseudouridine synthase 3, mitochondrial (EC 5.4.99.-) (RNA pseudouridylate synthase 3) (RNA-uridine isomerase 3),Pseudouridine synthase family protein ARA:AT1G78910-MONOMER; 5.4.99.- 53801,41737 RNA pseudouridine synthase 3, mitochondrial (EC 5.4.99.-) (RNA pseudouridylate synthase 3) (RNA-uridine isomerase 3),Pseudouridine synthase family protein mitochondrion [GO:0005739]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522] locus:2037593; AT1G78910 RNA pseudourine synthase 3 RNA pseudouridine synthase 3, mitochondrial (EC 5.4.99.-) (RNA pseudouridylate synthase 3) (RNA-uridine isomerase 3),Os08g0520100 protein (Fragment) Q0J4D4,A0A0P0XHS6 PUS3_ORYSJ,A0A0P0XHS6_ORYSJ Os08g0520100 LOC_Os08g40860 OJ1003_A09.9/OJ1003_A09.10 P0689E12.33 /P0689E12.34,Os08g0520100 OSNPB_080520100 ENOG411DY9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os02g0555100 protein Q0E0F3 Q0E0F3_ORYSJ Os02g0555100 Os02g0555100 OSNPB_020555100 ENOG411DY9A SOUL-1 F4IRX7 F4IRX7_ARATH SOUL heme-binding family protein Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is smaller. Short hypocotyl and large cotyledons under red light-P. Quail-2006 27352 SOUL heme-binding family protein Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; heme binding [GO:0020037]; red or far-red light signaling pathway [GO:0010017] locus:2065578; AT2G37970 SOUL heme-binding protein Os01g0850900 protein (SOUL heme-binding protein-like) (cDNA clone:001-122-A04, full insert sequence) (cDNA clone:J033112K22, full insert sequence) Q8LQ41 Q8LQ41_ORYSJ Os01g0850900 OSNPB_010850900 P0529H11.25 ENOG411DY9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 NA NA NA NA NA NA NA ENOG411DY9G Q56ZZ7 PLST4_ARATH Plastidic glucose transporter 4 (AtpGlcT) FUNCTION: May be involved in the efflux of glucose towards the cytosol. {ECO:0000269|PubMed:10810150}. MetaCyc:AT5G16150-MONOMER; R-ATH-189200;R-ATH-196836;R-ATH-422356;R-ATH-5653890;R-ATH-6798695;R-ATH-8981373; 56970 Plastidic glucose transporter 4 (AtpGlcT) chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] locus:2181422; AT5G16150 transporter Os01g0133400 protein (Fragment) Q0JQX6 Q0JQX6_ORYSJ Os01g0133400 Os01g0133400 OSNPB_010133400 ENOG411DY9D CPK28,CPK16 Q9FKW4,Q7XJR9,A0A1P8BD52 CDPKS_ARATH,CDPKG_ARATH,A0A1P8BD52_ARATH Calcium-dependent protein kinase 28 (EC 2.7.11.1),Calcium-dependent protein kinase 16 (EC 2.7.11.1),Calcium-dependent protein kinase 28 DISRUPTION PHENOTYPE: Severe growth defect in shoot elongation. Severe growth defect of flowering stem. {ECO:0000269|PubMed:23252373}. FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (Probable). Acts as developmentally controlled regulator for coordinated stem elongation and vascular development. Acts as key component which contributes to the developmental switch that establishes the transition from vegetative to reproductive growth (PubMed:23252373). Involved in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) signaling. Interacts with and phosphorylates the kinase BIK1, a central rate-limiting kinase in PTI signaling. Facilitates BIK1 turnover and negatively regulates BIK1-mediated immune responses triggered by several PAMPs. Its kinase activity is necessary and sufficient for its function in PTI signaling (PubMed:25525792). {ECO:0000269|PubMed:23252373, ECO:0000269|PubMed:25525792, ECO:0000305|PubMed:23252373}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 58972,64754,53373 Calcium-dependent protein kinase 28 (EC 2.7.11.1),Calcium-dependent protein kinase 16 (EC 2.7.11.1),Calcium-dependent protein kinase 28 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; intracellular signal transduction [GO:0035556]; multicellular organism development [GO:0007275]; negative regulation of defense response to bacterium [GO:1900425]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of growth [GO:0040008]; regulation of secondary shoot formation [GO:2000032],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in vascular and meristematic tissues throughout plant development. {ECO:0000269|PubMed:23252373}. locus:2156947;,locus:2827826; AT5G66210,AT2G17890 calcium-dependent protein kinase Calcium-dependent protein kinase 18 (OsCDPK18) (OsCPK18) (EC 2.7.11.1) (OsCDPK5),Calcium-dependent protein kinase 4 (OsCDPK4) (OsCPK4) (EC 2.7.11.1) (Calcium-dependent protein kinase OsCDPK1),Os07g0409900 protein Q0D715,Q6Z2M9,A0A0P0X548 CDPKI_ORYSJ,CDPK4_ORYSJ,A0A0P0X548_ORYSJ CPK18 CDPK5 Os07g0409900 LOC_Os07g22710 OsJ_23937,CPK4 CDPK1 Os02g0126400 LOC_Os02g03410 P0482F12.15-1 P0482F12.15-2,Os07g0409900 OSNPB_070409900 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Functions upstream of MPK5 in a signaling pathway that represses defense gene expression and negatively regulates resistance to rice blast fungus. Phosphorylates MPK5 at Thr-14 and Thr-32 and activates MPK5 independently of MAP kinase kinase (MKK) phosphorylation (PubMed:25035404). May be involved in arbuscular mycorrhizal presymbiotic phase signaling (PubMed:21595879). Phosphorylates the elicitor-responsive protein ERG1 in vitro. Phosphorylation is calcium-dependent (PubMed:23456295). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:21595879, ECO:0000269|PubMed:23456295, ECO:0000269|PubMed:25035404}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411DY9E MSH2 O24617 MSH2_ARATH DNA mismatch repair protein MSH2 (AtMSH2) (MutS protein homolog 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:12970498}. Increased meiotic recombination between divergent sequences tested using marker lines. FUNCTION: Component of the post-replicative DNA mismatch repair system (MMR). Forms three different heterodimers: MutS alpha (MSH2-MSH6 heterodimer), MutS beta (MSH2-MSH3 heterodimer) and MutS gamma (MSH2-MSH7 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. MutS alpha and MutS beta recognize single base mismatches and trinucleotide insertion-deletion loops (IDL) in the DNA. MutS gamma recognizes specifically the T/G single base mismatch. Plays a role in DNA homologous recombination repair and has a broad range of anti-recombination effects. Can suppress recombination between divergent direct repeats in somatic cells and possesses an anti-recombination meiotic effect. Is involved in a UV-B-induced DNA damage response pathway. {ECO:0000269|PubMed:10852942, ECO:0000269|PubMed:11550901, ECO:0000269|PubMed:12970498, ECO:0000269|PubMed:14530450, ECO:0000269|PubMed:16311517, ECO:0000269|PubMed:16507082, ECO:0000269|PubMed:17294256, ECO:0000269|PubMed:21307385}. R-ATH-5358565;R-ATH-5358606; 105503 DNA mismatch repair protein MSH2 (AtMSH2) (MutS protein homolog 2) MutSalpha complex [GO:0032301]; MutSbeta complex [GO:0032302]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA-dependent ATPase activity [GO:0008094]; double-strand/single-strand DNA junction binding [GO:0000406]; four-way junction DNA binding [GO:0000400]; guanine/thymine mispair binding [GO:0032137]; heteroduplex DNA loop binding [GO:0000404]; mismatched DNA binding [GO:0030983]; single base insertion or deletion binding [GO:0032138]; Y-form DNA binding [GO:0000403]; maintenance of DNA repeat elements [GO:0043570]; meiotic gene conversion [GO:0006311]; mismatch repair [GO:0006298]; negative regulation of reciprocal meiotic recombination [GO:0045128]; postreplication repair [GO:0006301]; pyrimidine dimer repair [GO:0006290] locus:2095097; AT3G18524 mismatch repair protein Os05g0274200 protein B9FNL5 B9FNL5_ORYSJ Os05g0274200 OsJ_17874 OSNPB_050274200 FUNCTION: Component of the post-replicative DNA mismatch repair system (MMR). {ECO:0000256|RuleBase:RU003756}. ENOG411DY9J PCMP-H33,PCMP-E51 O82380,Q9LSB8 PP175_ARATH,PP235_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 81),Putative pentatricopeptide repeat-containing protein At3g15930 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19934379}. FUNCTION: Involved in RNA editing event in chloroplasts. Required for the editing of a single site in rps12 transcript. {ECO:0000269|PubMed:19934379}. 82786,77684 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 81),Putative pentatricopeptide repeat-containing protein At3g15930 chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA processing [GO:0031425]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2060640;,locus:2093920; AT2G29760,AT3G15930 Pentatricopeptide repeat-containing protein Os01g0176300 protein Q9FU66 Q9FU66_ORYSJ Os01g0176300 OsJ_00586 OSNPB_010176300 P0013F10.12 ENOG411DY9H Q9ZVX7 Q9ZVX7_ARATH Expressed protein (GCIP-interacting family protein) (Uncharacterized protein At2g16860) R-ATH-72163; 35170 Expressed protein (GCIP-interacting family protein) (Uncharacterized protein At2g16860) catalytic step 2 spliceosome [GO:0071013]; post-mRNA release spliceosomal complex [GO:0071014]; Prp19 complex [GO:0000974] locus:2039395; AT2G16860 pre-mRNA-splicing factor GCIP-interacting family protein-like (Os06g0711600 protein) (cDNA clone:002-108-E04, full insert sequence) (cDNA clone:J033109G07, full insert sequence),Os06g0711200 protein (cDNA clone:002-150-F09, full insert sequence) Q5Z7Y7,Q5Z7Y9 Q5Z7Y7_ORYSJ,Q5Z7Y9_ORYSJ Os06g0711600 OJ1663_H12.6 OsJ_22627 OSNPB_060711600 P0655A07.39,Os06g0711200 OJ1663_H12.2 OsJ_22626 OSNPB_060711200 P0655A07.35 ENOG411DY9I AVP1 P31414 AVP1_ARATH Pyrophosphate-energized vacuolar membrane proton pump 1 (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3) Shoot defects include: smaller leaves decreased cell number in leaves mesophyll and vascular patterning disorganized cup-shaped cotyledons.Root defects: small cells at apex columella cell layers reduced to 2 deformed root cap. Abnormal cotyledon morphology; Small rosette; Thick leaves with uneven margins; Thick roots; Collapsed root tip; High penetrance of complete loss of flowering; Complete loss of flower formation; Sterile; Disorganized vascular patterning-R. Gaxiola-2005 FUNCTION: Contributes to the transtonoplast (from cytosol to vacuole lumen) H(+)-electrochemical potential difference. It establishes a proton gradient of similar and often greater magnitude than the H(+)-ATPase on the same membrane. In addition, facilitates auxin transport by modulating apoplastic pH and regulates auxin-mediated developmental processes. Confers tolerance to NaCl and to drought by increasing ion retention. {ECO:0000269|PubMed:11572991, ECO:0000269|PubMed:16210544, ECO:0000269|PubMed:8016125}. MISCELLANEOUS: Has few direct interactions with pyrophosphate. Interacts with the substrate via divalent metal cations, such as magnesium ions, that are bound to the pyrophosphate (By similarity). {ECO:0000250}. ARA:AT1G15690-MONOMER; 3.6.1.1; 3.6.1.1 80820 Pyrophosphate-energized vacuolar membrane proton pump 1 (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; hydrogen-translocating pyrophosphatase activity [GO:0009678]; inorganic diphosphatase activity [GO:0004427]; metal ion binding [GO:0046872]; auxin polar transport [GO:0009926]; establishment or maintenance of transmembrane electrochemical gradient [GO:0010248]; leaf development [GO:0048366]; proton transport [GO:0015992]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] DEVELOPMENTAL STAGE: Increase of expression in pollen during flower development. Expressed in developing leaves, sepals, petals, stamens and carpels. {ECO:0000269|PubMed:11442058, ECO:0000269|PubMed:16210544}. TISSUE SPECIFICITY: Ubiquitous (at protein level). Mostly expressed in vascular tissues, meristems and root pericycle. {ECO:0000269|PubMed:11442058, ECO:0000269|PubMed:16210544}. locus:2036134; AT1G15690 pyrophosphate-energized vacuolar membrane proton Os02g0802500 protein (Fragment),Os06g0644200 protein (Fragment),Os02g0184200 protein (Fragment) A0A0P0VQV1,A0A0N7KMH6,A0A0P0VFX2 A0A0P0VQV1_ORYSJ,A0A0N7KMH6_ORYSJ,A0A0P0VFX2_ORYSJ Os02g0802500 OSNPB_020802500,Os06g0644200 OSNPB_060644200,Os02g0184200 OSNPB_020184200 ENOG411DY9N Q9XIQ7 FBT7_ARATH Probable folate-biopterin transporter 7 FUNCTION: Could mediate folate transport. {ECO:0000250}. 48486 Probable folate-biopterin transporter 7 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2010911; AT1G64890 integral membrane transporter family protein Os05g0389400 protein (cDNA clone:J023097B07, full insert sequence) Q6I5Y4 Q6I5Y4_ORYSJ Os05g0389400 Os05g0389400 OJ1562_H01.1 OSJNBa0073E05.23 OSNPB_050389400 ENOG411DY9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os04g0615900 protein (Fragment) Q0JA50 Q0JA50_ORYSJ Os04g0615900 Os04g0615900 OSNPB_040615900 ENOG411DY9R PUX7,AtPUX7 Q94JZ8,A8MRM0 PUX7_ARATH,A8MRM0_ARATH Plant UBX domain-containing protein 7 (PUX7),UBX domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:23747397}. FUNCTION: Acts as a bridge between CDC48A and ubiquitin, suggesting a role in targeted protein degradation. {ECO:0000269|PubMed:23747397}. 51808,49490 Plant UBX domain-containing protein 7 (PUX7),UBX domain-containing protein nucleus [GO:0005634]; protein binding, bridging [GO:0030674] DEVELOPMENTAL STAGE: Expressed early during male gametophyte development. {ECO:0000269|PubMed:23747397}. TISSUE SPECIFICITY: Expressed broadly in sporophyte and gametophyte cells. {ECO:0000269|PubMed:23747397}. locus:2204497; AT1G14570 UBX domain-containing protein UBX domain-containing protein,Os04g0670800 protein (Fragment) Q7XR49,Q0J957 Q7XR49_ORYSJ,Q0J957_ORYSJ Os04g0670800 OSJNBa0043A12.36 OSNPB_040670800,Os04g0670800 Os04g0670800 OSNPB_040670800 ENOG411DY9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: bromodomain containing NA NA NA NA NA NA NA ENOG411DY9P MFT Q9XFK7 MFT_ARATH Protein MOTHER of FT and TFL1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seeds show hypersensitivity to ABA during seed germination. {ECO:0000269|PubMed:20551347}. Decreased rate of germination in the presence of ABA.,Decreased germination when grown in the presence of ABA. Sensitive to ABA-H. Yu-2010 FUNCTION: May form complexes with phosphorylated ligands by interfering with kinases and their effectors (By similarity). Regulates seed germination via the abscisic acid (ABA) and gibberellic acid (GA)signaling pathways. During seed germination, MFT expression is directly repressed by ABI3 or promoted by ABI5 in the ABA signaling pathway. Involved in a negative feedback regulation of ABA signaling. Promotes embryo growth by direct repression of ABI5. In the GA signaling pathway, MFT expression is promoted by the DELLA protein RGL2 during seed germination (PubMed:20551347). May regulate seed germination and fertility through the brassinosteroid (BR) signaling pathway (PubMed:20935478). {ECO:0000250|UniProtKB:P30086, ECO:0000269|PubMed:20551347, ECO:0000269|PubMed:20935478}. R-ATH-5675221; 19134 Protein MOTHER of FT and TFL1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of seed germination [GO:0010030]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Expressed in gametophytes and developing seeds. {ECO:0000269|PubMed:20935478}. locus:2194100; AT1G18100 mother of ft and Protein MOTHER of FT and TFL1 homolog 2 (OsMFT2) Q9ASJ1 MFT2_ORYSJ MFT2 Os01g0111600 LOC_Os01g02120 P0439B06.26 FUNCTION: May form complexes with phosphorylated ligands by interfering with kinases and their effectors. {ECO:0000250|UniProtKB:P30086}. ENOG411DY9Q Q9LPG2 Q9LPG2_ARATH At1g53460/T3F20_21 (Craniofacial development protein) (T3F20.22 protein) 36511 At1g53460/T3F20_21 (Craniofacial development protein) (T3F20.22 protein) locus:2203703; AT1G53460 NA Os01g0203300 protein (cDNA clone:002-101-F05, full insert sequence) Q5QNM8 Q5QNM8_ORYSJ Os01g0203300 Os01g0203300 OsJ_00788 OSNPB_010203300 P0451C06.1 P0489A05.35 ENOG411DY9V rps7-A; rps7-B P61841 RR7_ARATH 30S ribosomal protein S7, chloroplastic FUNCTION: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. {ECO:0000250}. 17357 30S ribosomal protein S7, chloroplastic chloroplast [GO:0009507]; membrane [GO:0016020]; small ribosomal subunit [GO:0015935]; thylakoid [GO:0009579]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:504954476;locus:504954713; ATCG00900ATCG01240; One of the primary rRNA binding proteins it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit (By similarity) 30S ribosomal protein S7, chloroplastic,Os09g0110750 protein,Os01g0856850 protein (Fragment) P0C491,A0A0P0XIG1,A0A0P0VAJ9 RR7_ORYSJ,A0A0P0XIG1_ORYSJ,A0A0P0VAJ9_ORYSJ rps7-A LOC_Osp1g00820 Nip129; rps7-B Nip206,Os09g0110750 OSNPB_090110750,Os01g0856850 OSNPB_010856850 FUNCTION: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. {ECO:0000250}. ENOG411DY9W MRS2-4,MRS2-6 Q93ZD7,Q1PE39 MRS24_ARATH,MRS26_ARATH Magnesium transporter MRS2-4 (Magnesium Transporter 6) (AtMGT6),Magnesium transporter MRS2-6, mitochondrial (Magnesium Transporter 5) (AtMGT5) Male gametophyte defective-S. Luan-2008 FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}.,FUNCTION: Magnesium transporter that mediates the influx/efflux of magnesium in a concentration-dependent manner. Plays a crucial role in male gametophyte development and male fertility. {ECO:0000269|PubMed:19825572}. MISCELLANEOUS: Has the ability to complement a mutant in yeast lacking magnesium transport capability.,MISCELLANEOUS: Has the ability to complement mutants in Salmonella typhimurium and yeast lacking magnesium transport capability. R-ATH-5223345; 48404,46021 Magnesium transporter MRS2-4 (Magnesium Transporter 6) (AtMGT6),Magnesium transporter MRS2-6, mitochondrial (Magnesium Transporter 5) (AtMGT5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095]; pollen development [GO:0009555] TISSUE SPECIFICITY: Expressed in the whole plant except roots. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19966073}.,TISSUE SPECIFICITY: Expressed predominantly in flowers notably in anthers at early stages of flower development. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19825572, ECO:0000269|PubMed:19966073}. locus:2077665;,locus:2139905; AT3G58970,AT4G28580 magnesium transporter Putative magnesium transporter MRS2-G,Os10g0545000 protein A3BV82,A0A0P0XXS0 MRS2G_ORYSJ,A0A0P0XXS0_ORYSJ MRS2-G Os10g0545000 LOC_Os10g39790 OsJ_28078 OSJNBa0001O14.11,Os10g0545000 OSNPB_100545000 FUNCTION: Putative magnesium transporter. {ECO:0000250}. ENOG411DY9T NAD7,ndhH P93306,P56753 NDUS2_ARATH,NDHH_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.5.3) (EC 1.6.99.3) (NADH dehydrogenase subunit 7),NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (NADH-plastoquinone oxidoreductase subunit H) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). Component of the iron-sulfur (IP) fragment of the enzyme. {ECO:0000250}.,FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01358}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07709) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited.,MISCELLANEOUS: Folded specifically by a chaperonin Cpn60 complex containing at least 1 Cpn60 beta 4 subunit. {ECO:0000305|PubMed:21483722}. ARA:ATMG00510-MONOMER;MetaCyc:ATMG00510-MONOMER;,ARA:ATCG01110-MONOMER; 1.6.5.3; 1.6.99.3,1.6.5.- 44962,45503 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.5.3) (EC 1.6.99.3) (NADH dehydrogenase subunit 7),NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (NADH-plastoquinone oxidoreductase subunit H) mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; NAD binding [GO:0051287]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; NAD binding [GO:0051287]; NADPH dehydrogenase activity [GO:0003959]; quinone binding [GO:0048038]; transport [GO:0006810] locus:504954734; ATMG00510,ATCG01110 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (NADH-plastoquinone oxidoreductase subunit H),NADH dehydrogenase subunit 7 P0C337,Q8HCQ3 NDHH_ORYSJ,Q8HCQ3_ORYSJ ndhH LOC_Osp1g00970 Nip164 Nip176,nad7 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01358}. MISCELLANEOUS: There is a 56 residue fragment from the N-terminus in a second position on the plastid genome (corresponds to Nip164); it is not clear if this is transcribed. ENOG411DY9U PTF2 O81787 PTF2_ARATH Plant-specific TFIIB-related protein PTF2 (Protein POLLEN-EXPRESSED TRANSCRIPTION FACTOR 2) (TFIIB-related protein PTF2) DISRUPTION PHENOTYPE: Embryonic lethality and aborted seed when homozygous. {ECO:0000269|PubMed:23713077}. FUNCTION: Plant-specific TFIIB-related protein that plays important roles in pollen germination and embryogenesis, possibly by regulating gene expression through interaction with TBP2 and the subunits of RNA polymerases. Binds double-stranded DNA in vitro. {ECO:0000269|PubMed:23713077}. 59591 Plant-specific TFIIB-related protein PTF2 (Protein POLLEN-EXPRESSED TRANSCRIPTION FACTOR 2) (TFIIB-related protein PTF2) nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; RNA polymerase binding [GO:0070063]; TFIIB-class transcription factor binding [GO:0001093]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; embryo development ending in seed dormancy [GO:0009793]; pollen germination [GO:0009846]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: In developing pollen grains, expressed in the vegetative nuclei at the early binucleate stage and during the second pollen mitosis. Expression significantly decreases at the late trinucleate developmental stage. Not expressed in released mature pollen grains, germinating pollen grains and pollen tubes. {ECO:0000269|PubMed:23713077}. TISSUE SPECIFICITY: Expressed in shoot apical meristems, root tips, primordia of lateral roots, inflorescences, developing pollen grains and embryos. {ECO:0000269|PubMed:23713077}. locus:2127953; AT4G35540 Zinc ion binding NA NA NA NA NA NA NA ENOG411DY9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein Os01g0748800 protein,Os05g0518000 protein A0A0P0V857,A0A0N7KL34 A0A0P0V857_ORYSJ,A0A0N7KL34_ORYSJ Os01g0748800 OSNPB_010748800,Os05g0518000 OSNPB_050518000 ENOG411DY9X Q5PNS0,Q9C6P8,A8MQI3,A0A1I9LPX7 Y3228_ARATH,Q9C6P8_ARATH,A8MQI3_ARATH,A0A1I9LPX7_ARATH PHD finger protein At3g20280,RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein F17J6.14),RING/FYVE/PHD zinc finger superfamily protein 50919,68363,78992,78909 PHD finger protein At3g20280,RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein F17J6.14),RING/FYVE/PHD zinc finger superfamily protein metal ion binding [GO:0046872] locus:2008051;,locus:2092414; AT3G20280,AT1G50620 PHD finger family protein Bactericidal permeability-increasing protein-like (Os06g0309000 protein) (cDNA clone:J023049E24, full insert sequence),Os02g0720000 protein (Fragment) Q5Z4Z5,Q0DY26 Q5Z4Z5_ORYSJ,Q0DY26_ORYSJ Os06g0309000 OSNPB_060309000 P0414E10.13,Os02g0720000 Os02g0720000 OSNPB_020720000 ENOG411DY9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor TFIID (or TATA-binding protein TBP) Os10g0432300 protein (TATA-box binding protein 1, putative, expressed) Q337X1 Q337X1_ORYSJ LOC_Os10g29660 Os10g0432300 OSNPB_100432300 ENOG411DY92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0011L07.4 protein (Os04g0539100 protein) (cDNA clone:J023028L03, full insert sequence),Os04g0539100 protein Q7XR97,A0A0P0WCY4 Q7XR97_ORYSJ,A0A0P0WCY4_ORYSJ Os04g0539100 Os04g0539100 OsJ_15618 OSJNBa0011L07.4 OSNPB_040539100,Os04g0539100 OSNPB_040539100 ENOG411DY93 Q9LVX1 C3H41_ARATH Zinc finger CCCH domain-containing protein 41 (AtC3H41) 99228 Zinc finger CCCH domain-containing protein 41 (AtC3H41) DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729] locus:2089094; AT3G27700 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 27 (OsC3H27) Q0JDM0 C3H27_ORYSJ Os04g0394300 LOC_Os04g32340 OSJNBa0072K14.6 ENOG411DY90 Q6NMC1,A0A1P8AVW7,A0A1P8AW09,F4IDE8 Q6NMC1_ARATH,A0A1P8AVW7_ARATH,A0A1P8AW09_ARATH,F4IDE8_ARATH At1g72640 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein 33635,28198,22293,33564 At1g72640 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535] locus:2030270; AT1G72640 NA Os03g0410700 protein A0A0P0VYP9 A0A0P0VYP9_ORYSJ Os03g0410700 OSNPB_030410700 ENOG411DY91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os04g0480600 protein (Fragment),Os04g0480700 protein,Os04g0480650 protein (Fragment) Q0JCC0,C7J100,A0A0P0WBY2 Q0JCC0_ORYSJ,C7J100_ORYSJ,A0A0P0WBY2_ORYSJ Os04g0480600 Os04g0480600 OSNPB_040480600,Os04g0480700 Os04g0480700 OSNPB_040480700,Os04g0480650 OSNPB_040480650 ENOG411DY96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: carboxylase beta Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta-like protein P0C2Y4 ACCD_ORYSJ accD ycf11 Nip067 FUNCTION: This enzyme activity is not detectable in leaves. ENOG411DY97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase A(1) Os09g0513100 protein,Os09g0513100 protein (Fragment) C7J6H5,A0A0P0XPT6 C7J6H5_ORYSJ,A0A0P0XPT6_ORYSJ Os09g0513100 OSNPB_090513100 ENOG411DY94 POT1,KT1 O22397,A0A1P8AYY4 POT1_ARATH,A0A1P8AYY4_ARATH Potassium transporter 1 (AtKT1) (AtKUP1) (AtPOT1),Potassium transporter FUNCTION: High-affinity potassium transporter that could play a major role in the uptake of potassium from the rhizosphere. May act as a low-affinity potassium transporter under high potassium concentrations. Could also transport rubidium. {ECO:0000269|PubMed:9477571}.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. MISCELLANEOUS: Low-affinity activity is strongly inhibited by barium or cesium. ARA:AT2G30070-MONOMER;MetaCyc:MONOMER-14583; 79127,65700 Potassium transporter 1 (AtKT1) (AtKUP1) (AtPOT1),Potassium transporter integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079],integral component of membrane [GO:0016021]; potassium ion transmembrane transporter activity [GO:0015079] TISSUE SPECIFICITY: Detected in the whole mature plant but preferentially expressed in roots and stems, and in potassium-starved plants. {ECO:0000269|PubMed:9477571}. locus:2045639; AT2G30070 potassium transporter NA NA NA NA NA NA NA ENOG411DY95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Potassium transporter 21 (OsHAK21) Q75G84 HAK21_ORYSJ HAK21 Os03g0576200 LOC_Os03g37930 OSJNBa0008D12.10 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DY98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Staphylococcal nuclease homologue Probable staphylococcal-like nuclease CAN3 (EC 3.1.31.-) (Calcium-dependent nuclease 3) (Ca(2+)-dependent nuclease 3),Probable staphylococcal-like nuclease CAN2 (EC 3.1.31.-) (Calcium-dependent nuclease 2) (Ca(2+)-dependent nuclease 2),Os11g0109500 protein,Os12g0109200 protein Q2QYR1,Q2RBJ2,A0A0P0XYI6,A0A0P0Y615 CAN3_ORYSJ,CAN2_ORYSJ,A0A0P0XYI6_ORYSJ,A0A0P0Y615_ORYSJ Os12g0109200 LOC_Os12g01830 OSJNBa0024J08,Os11g0109500 LOC_Os11g01830 OsJ_32671 OSJNBa0010K05,Os11g0109500 OSNPB_110109500,Os12g0109200 OSNPB_120109200 FUNCTION: Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond. {ECO:0000250}. ENOG411DY99 MYOB2,MYOB3 Q9CAC4,Q0WNW4 MYOB2_ARATH,MYOB3_ARATH Myosin-binding protein 2,Myosin-binding protein 3 DISRUPTION PHENOTYPE: No visible phenotype. Myob1 and myob2 double mutant has no visible phenotype, but a delayed flowering. Myob1, myob2 and myob3 triple mutant has a significant height reduction and a delayed flowering. Myob1, myob2, myob3 and myob4 quadruple mutant has a significant height reduction, a reduced rosette diameter and a delayed flowering. {ECO:0000269|PubMed:23995081}.,DISRUPTION PHENOTYPE: No visible phenotype. Myob1, myob2 and myob3 triple mutant has a significant height reduction and a delayed flowering. Myob1, myob2, myob3 and myob4 quadruple mutant has a significant height reduction, a reduced rosette diameter and a delayed flowering. {ECO:0000269|PubMed:23995081}. FUNCTION: Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment. {ECO:0000269|PubMed:23995081}. 86171,77021 Myosin-binding protein 2,Myosin-binding protein 3 integral component of membrane [GO:0016021]; transport vesicle [GO:0030133]; myosin binding [GO:0017022],integral component of membrane [GO:0016021]; myosin binding [GO:0017022] TISSUE SPECIFICITY: Expressed in leaf epidermal cells, roots and root hairs. {ECO:0000269|PubMed:23995081}. locus:2033566;,locus:2149025; AT1G70750,AT5G16720 Pfam:DUF593 Expressed protein (Os03g0259900 protein) (cDNA clone:J023020K23, full insert sequence) Q10NT0 Q10NT0_ORYSJ LOC_Os03g15410 Os03g0259900 OSNPB_030259900 ENOG411EFAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EGI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EGI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bromodomain associated NA NA NA NA NA NA NA ENOG411EGI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGI2 Q9SIY2 Q9SIY2_ARATH Expressed protein (Uncharacterized protein At2g11910) 18490 Expressed protein (Uncharacterized protein At2g11910) chloroplast envelope [GO:0009941] locus:2045934; AT2G11910 NA NA NA NA NA NA NA NA ENOG411EGI1 SAUR58 Q9C8C5,A0A1P8ATQ2 Q9C8C5_ARATH,A0A1P8ATQ2_ARATH Auxin-induced protein, putative (Putative auxin-responsive protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family 12085,12447 Auxin-induced protein, putative (Putative auxin-responsive protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family response to auxin [GO:0009733] locus:2030809; AT1G43040 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EGI0 F4KGN7 F4KGN7_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein 11311 RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2831834; AT5G03580 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EGI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os05g0539600 protein C7J2J9 C7J2J9_ORYSJ Os05g0539600 Os05g0539600 OSNPB_050539600 ENOG411EGI8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II reaction centre M protein (PsbM) NA NA NA NA NA NA NA ENOG411EGIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mlo family NA NA NA NA NA NA NA ENOG411EGIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EGIZ Q6NLT2,Q5S4Y8 Q6NLT2_ARATH,Q5S4Y8_ARATH At2g04495 (Transmembrane protein),Transmembrane protein 22992,22202 At2g04495 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:504955958;,locus:504955959; AT2G04495,AT2G04515 NA NA NA NA NA NA NA NA ENOG411EGIY NAD-ME1 Q9T0H6 Q9T0H6_ARATH Late embryogenesis abundant protein (LEA) family protein (Uncharacterized protein AT4g13560) (Uncharacterized protein At4g13560/T6G15_110) (Uncharacterized protein T6G15.110) 1.1.1.39; 11584 Late embryogenesis abundant protein (LEA) family protein (Uncharacterized protein AT4g13560) (Uncharacterized protein At4g13560/T6G15_110) (Uncharacterized protein T6G15.110) apoplast [GO:0048046]; cytosol [GO:0005829]; double fertilization forming a zygote and endosperm [GO:0009567] locus:2140842; AT4G13560 unfertilized embryo sac 15 NA NA NA NA NA NA NA ENOG411EGIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentapeptide repeats (8 copies) NA NA NA NA NA NA NA ENOG411EGID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DPBB_1 Os08g0485800 protein (cDNA, clone: J090010P05, full insert sequence) B7F9K7 B7F9K7_ORYSJ Os08g0485800 Os08g0485800 OsJ_27726 OSNPB_080485800 ENOG411EGIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EGIB T12C14_20 Q9LZQ8,Q9LK79 Q9LZQ8_ARATH,Q9LK79_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T12C14_20),Emb|CAB82946.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) 18712,22340 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein T12C14_20),Emb|CAB82946.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2095994;,locus:2156243; AT3G62320,AT5G48350 NA NA NA NA NA NA NA NA ENOG411EGIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: replication protein Os11g0629900 protein (Fragment),Os05g0111550 protein A0A0P0Y4H8,A0A0P0WHD7 A0A0P0Y4H8_ORYSJ,A0A0P0WHD7_ORYSJ Os11g0629900 OSNPB_110629900,Os05g0111550 OSNPB_050111550 ENOG411EE18 Q3E7D1,Q2V414,Q3EBI7,F4IJ12 FB131_ARATH,FBL37_ARATH,FB130_ARATH,F4IJ12_ARATH F-box protein At2g40925,F-box/LRR-repeat protein At2g40920,F-box protein At2g40910,F-box and associated interaction domains-containing protein 46551,49947,51309,43092 F-box protein At2g40925,F-box/LRR-repeat protein At2g40920,F-box protein At2g40910,F-box and associated interaction domains-containing protein chloroplast [GO:0009507] locus:504955955;,locus:2058480;,locus:2058470; AT2G40925,AT2G40920,AT2G40910 F-box associated domain NA NA NA NA NA NA NA ENOG411EE11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0477700 protein (Fragment) A0A0P0Y9X1 A0A0P0Y9X1_ORYSJ Os12g0477700 OSNPB_120477700 ENOG411EE10 SYP72 Q94KK6,A0A1I9LQN3 SYP72_ARATH,A0A1I9LQN3_ARATH Syntaxin-72 (AtSYP72),Syntaxin of plants 72 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. 30284,27325 Syntaxin-72 (AtSYP72),Syntaxin of plants 72 endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; protein transporter activity [GO:0008565]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],intracellular [GO:0005622]; membrane [GO:0016020]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Expressed in root, leaf, stem, flower and silique. locus:2078282; AT3G45280 SNARE domain NA NA NA NA NA NA NA ENOG411EE12 F5O8.20 Q9ZUD0,Q45GN9 Q9ZUD0_ARATH,Q45GN9_ARATH F5O8.20 protein,Expressed protein 26354,26208 F5O8.20 protein,Expressed protein AT1G23600 Domain of unknown function DUF220 NA NA NA NA NA NA NA ENOG411EE14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDP-fucose protein O-fucosyltransferase NA NA NA NA NA NA NA ENOG411EE17 F5O8.8 Q9ZUE2,F4I680,A0A1P8AWW3,A0A1P8AX24,F4I679,F4I682 Q9ZUE2_ARATH,F4I680_ARATH,A0A1P8AWW3_ARATH,A0A1P8AX24_ARATH,F4I679_ARATH,F4I682_ARATH F28C11.15 (F5O8.8 protein),OBP32pep protein,Uncharacterized protein 30234,17170,15466,29578,22402,19535 F28C11.15 (F5O8.8 protein),OBP32pep protein,Uncharacterized protein locus:2028885;,locus:2028874; AT1G23520,AT1G23510 Domain of unknown function DUF220 NA NA NA NA NA NA NA ENOG411EE1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like Embryogenesis transmembrane protein-like (Os06g0293500 protein) Q5Z567 Q5Z567_ORYSJ Os06g0293500 B1066D09.49 OSNPB_060293500 ENOG411EE1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EE1E Q84X02 FBD7_ARATH FBD-associated F-box protein At2g26860 47051 FBD-associated F-box protein At2g26860 locus:2039488; AT2G26860 NA NA NA NA NA NA NA NA ENOG411EE1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain NA NA NA NA NA NA NA ENOG411EE1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EE1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os07g0420900 protein A0A0P0X576 A0A0P0X576_ORYSJ Os07g0420900 OSNPB_070420900 ENOG411EE1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isoprenylcysteine carboxyl methyltransferase (ICMT) family NA NA NA NA NA NA NA ENOG411EE1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EE1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain Os08g0128700 protein (Putative spop) Q84US4 Q84US4_ORYSJ P0582D05.106 Os08g0128700 OSNPB_080128700 ENOG411EE1U ADF9 O49606 ADF9_ARATH Actin-depolymerizing factor 9 (ADF-9) (AtADF9) DISRUPTION PHENOTYPE: Developmental defects, reduced plant size, early flowering and decreased number of inflorescence secondary branches. {ECO:0000269|PubMed:21570971}. FUNCTION: Does not display typical F-actin depolymerizing activity. Exhibits a high ability to stabilize and cross-link actin filaments. Functions as an actin bundling protein with the highest efficiency under acidic conditions (PubMed:21570971). May play a role in the modulation of levels of histone H3 lysine 4 trimethylation and H3 lysine 9 and 14 acetylation at the FLC locus (PubMed:18830798). {ECO:0000269|PubMed:18830798, ECO:0000269|PubMed:21570971}. 16370 Actin-depolymerizing factor 9 (ADF-9) (AtADF9) actin cytoskeleton [GO:0015629]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042]; actin filament polymerization [GO:0030041] locus:2131556; AT4G34970 actin depolymerizing factor 9 NA NA NA NA NA NA NA ENOG411EE1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) Os01g0153600 protein Q5ZD66 Q5ZD66_ORYSJ P0030H07.28 Os01g0153600 OSNPB_010153600 ENOG411EE1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endomembrane protein 70 NA NA NA NA NA NA NA ENOG411E2SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0123800 protein) (cDNA clone:006-209-C05, full insert sequence) (cDNA clone:J023025C19, full insert sequence) Q8H8G3 Q8H8G3_ORYSJ OJ1126B12.18 LOC_Os03g03200 Os03g0123800 OSNPB_030123800 ENOG411E2SE DPA Q9FNY3 DPA_ARATH Transcription factor-like protein DPA (DP-like protein A) (AtDPbA) (E2F dimerization partner protein A) (AtDP2a) FUNCTION: Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}. R-ATH-1538133; 33038 Transcription factor-like protein DPA (DP-like protein A) (AtDPbA) (E2F dimerization partner protein A) (AtDP2a) cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell cycle [GO:0007049]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Low expression at the G1/S transition and increases during the S phase. S/G2 transitions. {ECO:0000269|PubMed:11669580}. TISSUE SPECIFICITY: Strongly expressed in the actively dividing tissues of the shoot apical meristem, young leaf primordia, the vascular tissues of the maturing leaf primordia and axillary buds. {ECO:0000269|PubMed:11889041}. locus:2181788; AT5G02470 transcription NA NA NA NA NA NA NA ENOG411E2SF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome c/c1 heme lyase NA NA NA NA NA NA NA ENOG411E2SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA actin-depolymerizing factor NA NA NA NA NA NA NA ENOG411E2SX MKD10.4 Q8GYF9,A0A1P8BGG1,A0A1P8BGF0 Q8GYF9_ARATH,A0A1P8BGG1_ARATH,A0A1P8BGF0_ARATH Ribosomal RNA-processing 7 protein (Uncharacterized protein At5g38720) (Uncharacterized protein At5g38720/MKD10_20),Ribosomal RNA-processing 7 protein R-ATH-6791226; 35358,36100,37598 Ribosomal RNA-processing 7 protein (Uncharacterized protein At5g38720) (Uncharacterized protein At5g38720/MKD10_20),Ribosomal RNA-processing 7 protein CURI complex [GO:0032545]; UTP-C complex [GO:0034456]; ribosomal small subunit assembly [GO:0000028]; rRNA processing [GO:0006364] locus:2166661; AT5G38720 ribosomal RNA-processing protein 7 Os02g0728700 protein Q6YWS5 Q6YWS5_ORYSJ Os02g0728700 Os02g0728700 OSJNBa0072H09.7 OSNPB_020728700 ENOG411E2SW MQJ2.15 Q9FGG8 Q9FGG8_ARATH At5g58530 (Emb|CAB72177.1) (Glutaredoxin family protein) (Uncharacterized protein At5g58530/mqj2_120) 30677 At5g58530 (Emb|CAB72177.1) (Glutaredoxin family protein) (Uncharacterized protein At5g58530/mqj2_120) cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2171223; AT5G58530 Glutaredoxin NA NA NA NA NA NA NA ENOG411E2SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat Shock Protein 16.9 kDa class I heat shock protein 2 (16.9 kDa heat shock protein 2) (OsHsp16.9B),16.9 kDa class I heat shock protein 1 (16.9 kDa heat shock protein 1) (OsHsp16.9A),16.9 kDa class I heat shock protein 3 (16.9 kDa heat shock protein 3) (OsHsp16.9C) Q943E6,P27777,Q943E7 HS16B_ORYSJ,HS16A_ORYSJ,HS16C_ORYSJ HSP16.9B Os01g0136200 LOC_Os01g04380 P0443D08.6,HSP16.9A Os01g0136100 LOC_Os01g04370 OsJ_00279 P0443D08.5,HSP16.9C Os01g0136000 LOC_Os01g04360 OsJ_00278 P0443D08.3 ENOG411E2SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pollen Ole e 1 allergen and extensin family protein Os06g0556600 protein (Putative pollen allergen Phl p 11) (cDNA clone:J023132A12, full insert sequence) Q5Z7I0 Q5Z7I0_ORYSJ Os06g0556600 Os06g0556600 OsJ_21682 OSJNBa0090E14.1 OSNPB_060556600 P0458E11.31 ENOG411E2S1 Q9XI32 Q9XI32_ARATH F9L1.32 protein (SNARE-like superfamily protein) (Uncharacterized protein At1g15370) (Uncharacterized protein At1g15370/F9L1_32) 16608 F9L1.32 protein (SNARE-like superfamily protein) (Uncharacterized protein At1g15370) (Uncharacterized protein At1g15370/F9L1_32) transport [GO:0006810] locus:2037713; AT1G15370 NA Os03g0856200 protein B9F7Z4 B9F7Z4_ORYSJ Os03g0856200 OsJ_13429 OSNPB_030856200 ENOG411E4T7 F7A10.9 Q9C542,B3H4C4,F4HYQ1 Q9C542_ARATH,B3H4C4_ARATH,F4HYQ1_ARATH At1g55160/T7N22.11 (Uncharacterized protein F7A10.9) (Uncharacterized protein T7N22.11) (WAS/WASL-interacting family protein),WAS/WASL-interacting family protein 20828,15423,23844 At1g55160/T7N22.11 (Uncharacterized protein F7A10.9) (Uncharacterized protein T7N22.11) (WAS/WASL-interacting family protein),WAS/WASL-interacting family protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2035731; AT1G55160 NA Os05g0593200 protein (cDNA clone:001-022-E07, full insert sequence) Q0DFF8 Q0DFF8_ORYSJ Os05g0593200 Os05g0593200 OsJ_19764 OSNPB_050593200 ENOG411E4T6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0560700 protein (Fragment) A0A0P0WDG2 A0A0P0WDG2_ORYSJ Os04g0560700 OSNPB_040560700 ENOG411E4T5 BLOS1 O22929,A0A1P8B122 BL1S1_ARATH,A0A1P8B122_ARATH Biogenesis of lysosome-related organelles complex 1 subunit 1 (BLOC-1 subunit 1) (GCN5-like protein 1) (Protein RT14 homolog),GCN5L1 family protein DISRUPTION PHENOTYPE: Longer primary roots and more lateral roots in the RNAi mutant. {ECO:0000269|PubMed:20971704}. Longer primary roots and increased number of lateral roots as compared to WT. Increased levels of PIN1 and PIN2 proteins on the plasma membrane. FUNCTION: Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1), a complex that mediates the vacuolar degradative transport via the intracellular vesicle trafficking from the endosome to the vacuole. Probably regulates the PIN1 and PIN2 homeostasis through its interaction with SNX1. {ECO:0000269|PubMed:20971704}. 17378,16381 Biogenesis of lysosome-related organelles complex 1 subunit 1 (BLOC-1 subunit 1) (GCN5-like protein 1) (Protein RT14 homolog),GCN5L1 family protein BLOC-1 complex [GO:0031083]; endosome [GO:0005768]; mitochondrion [GO:0005739]; endosomal transport [GO:0016197]; late endosome to vacuole transport [GO:0045324]; root development [GO:0048364],BLOC-1 complex [GO:0031083] TISSUE SPECIFICITY: Expressed in the whole plant (at protein level). {ECO:0000269|PubMed:20971704}. locus:2065759; AT2G30330 biogenesis of lysosome-related organelles complex 1 subunit Os12g0416500 protein (Fragment),Expressed protein (Os11g0112300 protein) (cDNA clone:J023019I07, full insert sequence),Os12g0111900 protein Q0INP5,Q2RBG4,A0A0P0Y6C6 Q0INP5_ORYSJ,Q2RBG4_ORYSJ,A0A0P0Y6C6_ORYSJ Os12g0416500 Os12g0416500 OSNPB_120416500,Os11g0112300 LOC_Os11g02110 OsJ_32692 OSNPB_110112300,Os12g0111900 OSNPB_120111900 ENOG411E4T4 F7A7.17 Q9M011,F4K9G5,A0A1P8B982 Q9M011_ARATH,F4K9G5_ARATH,A0A1P8B982_ARATH Light-inducible protein ATLS1 (Tautomerase/MIF superfamily protein),Tautomerase/MIF superfamily protein R-ATH-6798695; 12111,13163,12251 Light-inducible protein ATLS1 (Tautomerase/MIF superfamily protein),Tautomerase/MIF superfamily protein chloroplast [GO:0009507] locus:2149830; AT5G01650 macrophage migration inhibitory factor Macrophage migration inhibitory factor family protein, expressed (Os11g0107500 protein) (cDNA clone:J023050K24, full insert sequence),Macrophage migration inhibitory factor family protein, expressed (Os12g0107500 protein) (cDNA, clone: J065029G04, full insert sequence) Q2RBL5,B7F8E6 Q2RBL5_ORYSJ,B7F8E6_ORYSJ Os11g0107500 LOC_Os11g01600 Os11g0107500 OsJ_34938 OSNPB_110107500,Os12g0107500 LOC_Os11g01600 OsJ_34950 OSNPB_120107500 ENOG411E4T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand NA NA NA NA NA NA NA ENOG411E4T2 Q0WPS6 Q0WPS6_ARATH Adenine phosphoribosyltransferase 25106 Adenine phosphoribosyltransferase transferase activity, transferring glycosyl groups [GO:0016757] locus:1006230589; AT5G45660 NA Os01g0727900 protein Q5JM43 Q5JM43_ORYSJ Os01g0727900 OsJ_03328 OSNPB_010727900 P0042A10.44 P0456A01.8 ENOG411E4T1 PIN1 Q9SL42 PIN1_ARATH Peptidyl-prolyl cis-trans isomerase Pin1 (PPIase Pin1) (EC 5.2.1.8) (PIN1At) (Rotamase Pin1) FUNCTION: Prolyl cis/trans isomerase with specificity for phospho-Ser-Pro bonds. {ECO:0000269|PubMed:10744752}. MISCELLANEOUS: Like all plant Pin1-type PPIases, do not contain the N-terminal WW domain found in other eukaryotic parvulins, but contains a four-amino acid insertion next to the phospho-specific recognition site of the active site. These extra amino acids may be important for mediating the substrate interaction of plant enzymes. ARA:AT2G18040-MONOMER; 5.2.1.8 13015 Peptidyl-prolyl cis-trans isomerase Pin1 (PPIase Pin1) (EC 5.2.1.8) (PIN1At) (Rotamase Pin1) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; gravitropism [GO:0009630]; regulation of cell cycle [GO:0051726]; regulation of flower development [GO:0009909]; regulation of protein localization [GO:0032880] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:10744752}. locus:2060922; AT2G18040 Peptidyl-prolyl cis-trans isomerase Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) Q7XTK0 Q7XTK0_ORYSJ Os04g0118500 OsJ_13578 OSJNBa0020P07.4 OSNPB_040118500 ENOG411E4T0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os06g0702000 protein Q5Z8X3 Q5Z8X3_ORYSJ Os06g0702000 Os06g0702000 OSNPB_060702000 P0596H10.22 ENOG411E4T9 Q94C12,Q9M9B4 NDBAB_ARATH,NDBAA_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B,NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT1G49140-MONOMER;MetaCyc:AT1G49140-MONOMER; 12438,12530 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B,NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; oxidation-reduction process [GO:0055114]; photorespiration [GO:0009853] locus:2095022;,locus:2028401; AT3G18410,AT1G49140 Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) Os10g0576000 protein (Fragment) Q0IVE4 Q0IVE4_ORYSJ Os10g0576000 OSNPB_100576000 ENOG411E4T8 TCP11,TCP16 Q9SJK7,Q9M1U4 TCP11_ARATH,TCP16_ARATH Transcription factor TCP11,Transcription factor TCP16 Complete male gametophyte defective; Female gametophyte defective-C. Ueguchi-2006 FUNCTION: Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. 20682,17998 Transcription factor TCP11,Transcription factor TCP16 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in developing microspores during pollen development. First observed at the tetrad stage, and later accumulates in an early unicellular stage. Levels decrease as the pollen grain matures. {ECO:0000269|PubMed:16786299}. TISSUE SPECIFICITY: Mostly in anther in young buds. {ECO:0000269|PubMed:16786299}. locus:2057911;,locus:2096925; AT2G37000,AT3G45150 Transcription factor NA NA NA NA NA NA NA ENOG411E4TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4TF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Mediator of RNA polymerase II transcription subunit NA NA NA NA NA NA NA ENOG411E4TE BOLA1 Q682I1 BOLA1_ARATH Protein BOLA1, chloroplastic FUNCTION: May act either alone or in interaction with glutaredoxin as a redox-regulated transcriptional regulator, or as a factor regulating Fe-S cluster biogenesis (Probable). The glutaredoxin-BOLA1 heterodimers bind a labile, oxygen sensitive iron-sulfur cluster (PubMed:24714563). {ECO:0000269|PubMed:24714563, ECO:0000305|PubMed:24203231}. MISCELLANEOUS: The GRXS14-BOLA1 apo-heterodimer model derived from NMR data shows a domain arrangement totally different from the holo-heterodimer showing evidence for a Rieske-type ligation of a [2Fe-2S] cluster. {ECO:0000269|PubMed:25012657}. 17672 Protein BOLA1, chloroplastic chloroplast [GO:0009507]; 2 iron, 2 sulfur cluster binding [GO:0051537]; metal ion binding [GO:0046872] locus:505006189; AT1G55805 SufE-like protein BolA-like protein, expressed (Os03g0219500 protein) (cDNA clone:001-031-C02, full insert sequence) Q10PW0 Q10PW0_ORYSJ Os03g0219500 LOC_Os03g11990 OsJ_09945 OSNPB_030219500 ENOG411E4TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os05g0531400 protein (cDNA, clone: J065130M24, full insert sequence) Q75K53 Q75K53_ORYSJ Os05g0531400 OJ1131_E09.17 OSNPB_050531400 ENOG411E4TB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor Os01g0976800 protein (Zinc finger protein-like) (cDNA, clone: J065189M03, full insert sequence) Q5JNB8 Q5JNB8_ORYSJ Os01g0976800 OsJ_04967 OSNPB_010976800 P0020E09.12 ENOG411E4TA Q8LG92 Q8LG92_ARATH LS1-like protein (Putative LS1) (Putative macrophage migration inhibitory factor (MIF)) (Tautomerase/MIF superfamily protein) R-ATH-6798695; 12210 LS1-like protein (Putative LS1) (Putative macrophage migration inhibitory factor (MIF)) (Tautomerase/MIF superfamily protein) peroxisome [GO:0005777] locus:2098272; AT3G51660 macrophage migration inhibitory factor NA NA NA NA NA NA NA ENOG411E4TM CURT1C Q9M812,A0A1P8ASY4 CUT1C_ARATH,A0A1P8ASY4_ARATH Protein CURVATURE THYLAKOID 1C, chloroplastic,CURVATURE THYLAKOID protein DISRUPTION PHENOTYPE: No effect on growth behavior, leaf coloration, grana stacks or photochemical efficiency of photosystem II. Curt1a, curt1b, curt1c and curt1d quadruple mutant shows disorganized thylakoids with extended stretches of unstacked membranes and broader stacks made up of fewer layers. {ECO:0000269|PubMed:23839788}. FUNCTION: Determines thylakoid architecture by inducing membrane curvature. {ECO:0000269|PubMed:23839788}. 16946,15432 Protein CURVATURE THYLAKOID 1C, chloroplastic,CURVATURE THYLAKOID protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; thylakoid [GO:0009579] locus:2037435; AT1G52220 Inherit from NOG: Thylakoid membrane phosphoprotein 14 kDa Os01g0761000 protein (p0460E08.25 protein) Q94DS3 Q94DS3_ORYSJ P0460E08.25 Os01g0761000 OsJ_03533 OSNPB_010761000 P0512C01.14 ENOG411E4TK Q8GWP4 Q8GWP4_ARATH At2g21530 (SMAD/FHA domain-containing protein) (Uncharacterized protein At2g21530) 22676 At2g21530 (SMAD/FHA domain-containing protein) (Uncharacterized protein At2g21530) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; nucleus [GO:0005634]; mRNA binding [GO:0003729] locus:2050034; AT2G21530 domain-containing protein NA NA NA NA NA NA NA ENOG411E4TJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll a NA NA NA NA NA NA NA ENOG411E4TI F26K24.18,F26K24.15 Q9FDY0,Q9SF10,Q9SF13 Q9FDY0_ARATH,Q9SF10_ARATH,Q9SF13_ARATH AT3g11890 (AT3g11890/F26K24_18) (Sterile alpha motif (SAM) domain-containing protein) (Uncharacterized protein At3g11890),F26K24.18 protein (Sterile alpha motif (SAM) domain-containing protein),F26K24.15 protein (Sterile alpha motif (SAM) domain protein) 55621,58602,28828 AT3g11890 (AT3g11890/F26K24_18) (Sterile alpha motif (SAM) domain-containing protein) (Uncharacterized protein At3g11890),F26K24.18 protein (Sterile alpha motif (SAM) domain-containing protein),F26K24.15 protein (Sterile alpha motif (SAM) domain protein) locus:2081461;,locus:2081536; AT3G11890,AT3G11860 SAM domain (Sterile alpha motif) Os08g0378800 protein (cDNA clone:J023036M04, full insert sequence) (cDNA clone:J033025N24, full insert sequence) Q7EYN2 Q7EYN2_ORYSJ Os08g0378800 Os08g0378800 OSJNBb0011E04.119 OSNPB_080378800 P0709D11.9 ENOG411E4TW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os01g0689000 protein (cDNA clone:002-178-E08, full insert sequence) Q8S9V7 Q8S9V7_ORYSJ Os01g0689000 Os01g0689000 OsJ_03066 OSNPB_010689000 P0519D04.39 ENOG411E4TV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor AP2 domain containing protein, expressed (Ap23) (Os03g0150200 protein),B1234D02.6 protein (Os04g0257500 protein) (cDNA clone:002-132-H03, full insert sequence) Q8H075,Q6MWK9 Q8H075_ORYSJ,Q6MWK9_ORYSJ LOC_Os03g05590 Os03g0150200 OSJNBb0050N02.16 OSNPB_030150200,Os04g0257500 B1234D02.6 OSNPB_040257500 ENOG411E4TU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os06g0701900 protein (Fragment) A0A0P0X0Y9 A0A0P0X0Y9_ORYSJ Os06g0701900 OSNPB_060701900 ENOG411E4TT Q8W494 Q8W494_ARATH Ribosomal RNA-processing protein 22696 Ribosomal RNA-processing protein locus:2202059; AT1G11240 Nucleolar protein 12 (25kDa) Expressed protein (Os03g0353500 protein) (cDNA clone:J013014L03, full insert sequence) Q10LE2 Q10LE2_ORYSJ Os03g0353500 LOC_Os03g23020 Os03g0353500 OsJ_10862 OSNPB_030353500 ENOG411E4TS Q8L9R4 Q8L9R4_ARATH At5g27990 (Pre-rRNA-processing protein TSR2, conserved region) 20363 At5g27990 (Pre-rRNA-processing protein TSR2, conserved region) nucleus [GO:0005634]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2143799; AT5G27990 Pre-rRNA-processing protein Os08g0508600 protein (cDNA clone:001-106-A06, full insert sequence) Q6YVT3 Q6YVT3_ORYSJ Os08g0508600 B1168A08.20 OSJNBb0064I19.32 OSNPB_080508600 ENOG411E4TR P58728,Q9LW64 SF3BB_ARATH,SF3BA_ARATH Uncharacterized protein At4g14342,Uncharacterized protein At3g23325 MISCELLANEOUS: Was originally fused with At3g23315 to form At3g23320. R-ATH-72163;R-ATH-72165; 10161,10177 Uncharacterized protein At4g14342,Uncharacterized protein At3g23325 precatalytic spliceosome [GO:0071011]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; mRNA splicing, via spliceosome [GO:0000398] locus:1005716320;,locus:505006364; AT4G14342,AT3G23325 Splicing factor 3B subunit Os08g0444100 protein (Splicing factor 3B subunit 5-like protein) (cDNA clone:J033068N16, full insert sequence),Os08g0278966 protein Q6Z8Q6,A0A0P0XE29 Q6Z8Q6_ORYSJ,A0A0P0XE29_ORYSJ Os08g0444100 Os08g0444100 OSNPB_080444100 P0708B04.23,Os08g0278966 OSNPB_080278966 ENOG411E4TQ EGC1,EXLB2 Q9M0C2,A0A1P8B4P8 EGC1_ARATH,A0A1P8B4P8_ARATH Putative EG45-like domain containing protein 1 (Plant natriuretic peptide B) (AtEXPR2) (AtPNP-B) (Ath-ExpGamma-1.1),Barwin-related endoglucanase FUNCTION: Might have a systemic role in water and solute homeostasis. {ECO:0000250}. 13261,13491 Putative EG45-like domain containing protein 1 (Plant natriuretic peptide B) (AtEXPR2) (AtPNP-B) (Ath-ExpGamma-1.1),Barwin-related endoglucanase extracellular region [GO:0005576]; cellular response to hypoxia [GO:0071456] locus:2118656; AT4G30380 DPBB_1 Os06g0688300 protein A0A0P0X0H0 A0A0P0X0H0_ORYSJ Os06g0688300 OSNPB_060688300 ENOG411E4TP Q6NLC8 Y1648_ARATH Uncharacterized protein At1g66480 24731 Uncharacterized protein At1g66480 plasma membrane [GO:0005886] locus:2028942; AT1G66480 NA NA NA NA NA NA NA NA ENOG411E4TZ CML44 Q9LPK5 CML44_ARATH Probable calcium-binding protein CML44 (Calmodulin-like protein 44) FUNCTION: Potential calcium sensor. {ECO:0000250}. 17942 Probable calcium-binding protein CML44 (Calmodulin-like protein 44) calcium ion binding [GO:0005509] locus:2027047; AT1G21550 calcium-binding protein NA NA NA NA NA NA NA ENOG411E4TY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os03g0111600 protein) (cDNA clone:J023149K08, full insert sequence) Q10ST3 Q10ST3_ORYSJ LOC_Os03g02090 Os03g0111600 OSNPB_030111600 ENOG411E4TX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0591300 protein Q0D502 Q0D502_ORYSJ Os07g0591300 Os07g0591300 OsJ_24955 OSNPB_070591300 ENOG411E07B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0182900 protein B9FMU2 B9FMU2_ORYSJ Os05g0182900 OsJ_17366 OSNPB_050182900 ENOG411E07A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2 3 complex (By similarity) Probable protein ABIL3 (Abl interactor-like protein 3) Q5NB83 ABIL3_ORYSJ Os01g0236400 LOC_Os01g13530 OsJ_01031 P0708G02.30 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411E07N SKIP22 O64600,Q9ZUB9,Q9ZUB8 FB81_ARATH,FB17_ARATH,SKI22_ARATH F-box protein At1g70360,Putative F-box protein At1g23770,F-box protein SKIP22 (SKP1-interacting partner 22) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 19420,39953,52947 F-box protein At1g70360,Putative F-box protein At1g23770,F-box protein SKIP22 (SKP1-interacting partner 22) nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:2016169;,locus:2034835;,locus:2034845; AT1G70360,AT1G23770,AT1G23780 F-box protein Os03g0232000 protein Q0DTQ9 Q0DTQ9_ORYSJ Os03g0232000 OSNPB_030232000 ENOG411E074 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant pleckstrin homology-like region Os02g0658000 protein (Fragment) A0A0P0VMR7 A0A0P0VMR7_ORYSJ Os02g0658000 OSNPB_020658000 ENOG411E073 DOT3 Q9LFU0,A0A1P8BAS4 DOT3_ARATH,A0A1P8BAS4_ARATH BTB/POZ domain-containing protein DOT3 (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 3),Phototropic-responsive NPH3 family protein DISRUPTION PHENOTYPE: Defects in shoot and primary root growth and aberrant parallel venation pattern in juvenile leaves. {ECO:0000269|PubMed:18643975}. dot3-2 mutants are dwarved plants with reduced fertility compared to wild type Arabidopsis plants.,dot3-1 mutants are dwarfed plants that have a parallel venation pattern defect in their leaves and abnormal vein loop patterns in their cotyledons. Primary root growth is significantly inhibited in dot3-1 mutants but they can produce lateral and adventitious roots. Dwarf; Very short primary root; Abnormal leaf venation-T. Nelson-2008 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000250, ECO:0000269|PubMed:18643975}. PATHWAY: Protein modification; protein ubiquitination. 69973,71677 BTB/POZ domain-containing protein DOT3 (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 3),Phototropic-responsive NPH3 family protein cotyledon vascular tissue pattern formation [GO:0010588]; leaf vascular tissue pattern formation [GO:0010305]; phloem or xylem histogenesis [GO:0010087]; primary root development [GO:0080022]; protein ubiquitination [GO:0016567]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Expressed in emerging leaf primordia. {ECO:0000269|PubMed:18643975}. locus:2145387; AT5G10250 BTB POZ domain-containing protein DOT3-like NA NA NA NA NA NA NA ENOG411EG8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0041 Mitochondrial pyruvate carrier Q0D5K8 Q0D5K8_ORYSJ Os07g0553700 Os07g0553700 OSNPB_070553700 FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000256|RuleBase:RU363100}. ENOG411EBMW DPS,cPT6 O80458,Q8GY03,Q8RX73,A0A1P8BG36,F4IMI8,A0A1P8AZB2 DDPS1_ARATH,DDPS4_ARATH,DDPS3_ARATH,A0A1P8BG36_ARATH,F4IMI8_ARATH,A0A1P8AZB2_ARATH Dehydrodolichyl diphosphate synthase 1 (Dedol-PP synthase 1) (EC 2.5.1.87) (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific) 1),Dehydrodolichyl diphosphate synthase 4 (Dedol-PP synthase 4) (EC 2.5.1.-),Dehydrodolichyl diphosphate synthase 3 (Dedol-PP synthase 3) (EC 2.5.1.-),Alkyl transferase (EC 2.5.1.-) FUNCTION: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein. {ECO:0000269|PubMed:10764783, ECO:0000269|PubMed:10908715}.,FUNCTION: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. ARA:AT2G23410-MONOMER;,ARA:AT5G58782-MONOMER;,ARA:AT5G58780-MONOMER; 2.5.1.87; 2.5.1.87,2.5.1.- 34975,33710,35195,35795,33325,22500 Dehydrodolichyl diphosphate synthase 1 (Dedol-PP synthase 1) (EC 2.5.1.87) (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific) 1),Dehydrodolichyl diphosphate synthase 4 (Dedol-PP synthase 4) (EC 2.5.1.-),Dehydrodolichyl diphosphate synthase 3 (Dedol-PP synthase 3) (EC 2.5.1.-),Alkyl transferase (EC 2.5.1.-) cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; polyprenyltransferase activity [GO:0002094]; polyprenol biosynthetic process [GO:0016094]; protein glycosylation [GO:0006486],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; polyprenyltransferase activity [GO:0002094]; rubber cis-polyprenylcistransferase activity [GO:0050267]; polyprenol biosynthetic process [GO:0016094]; protein glycosylation [GO:0006486]; response to cold [GO:0009409],transferase activity, transferring alkyl or aryl (other than methyl) groups [GO:0016765],cytosol [GO:0005829]; integral component of membrane [GO:0016021]; polyprenyltransferase activity [GO:0002094]; polyprenol biosynthetic process [GO:0016094],integral component of membrane [GO:0016021]; transferase activity, transferring alkyl or aryl (other than methyl) groups [GO:0016765] TISSUE SPECIFICITY: Expressed in low levels in the whole plant. Preferentially expressed in roots. {ECO:0000269|PubMed:10764783, ECO:0000269|PubMed:10908715}. locus:2046867;,locus:505006701;,locus:2178838;,locus:2046857; AT2G23410,AT5G58782,AT5G58780,AT2G23400 Putative undecaprenyl diphosphate synthase NA NA NA NA NA NA NA ENOG411E1IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0278400 protein (Putative cytochrome P450),Os02g0278400 protein Q6ERN5,Q0E225 Q6ERN5_ORYSJ,Q0E225_ORYSJ Os02g0278400 P0444A09.9-1 OSJNBa0055M07.30-1 OSNPB_020278400,Os02g0278400 Os02g0278400 OSNPB_020278400 ENOG411E1IW CRRSP55 Q9LV60 CRR55_ARATH Cysteine-rich repeat secretory protein 55 28995 Cysteine-rich repeat secretory protein 55 extracellular region [GO:0005576]; response to karrikin [GO:0080167] locus:2166091; AT5G48540 cysteine-rich repeat secretory protein 33 kDa secretory protein, putative, expressed (Os03g0277700 protein),Os08g0136500 protein (Putative 33-kDa secretory protein) (cDNA clone:006-209-E07, full insert sequence),33 kDa secretory protein, putative, expressed (Os03g0312300 protein) (cDNA clone:002-181-H09, full insert sequence),33-kDa secretory protein (33kDa secretory protein) (Os08g0136700 protein) (cDNA clone:J033075I11, full insert sequence),33kDa secretory protein (Os08g0136800 protein) (Putative 33 kDa secretory protein) (cDNA clone:001-113-F10, full insert sequence),33-kDa secretory protein (Os08g0136300 protein),33 kDa secretory protein, putative, expressed (Os03g0277600 protein) (cDNA clone:006-306-G05, full insert sequence) Q10N97,Q6YYB3,Q10ME0,Q6ZJX4,Q6ZJX3,Q6ZJX8,Q10N98 Q10N97_ORYSJ,Q6YYB3_ORYSJ,Q10ME0_ORYSJ,Q6ZJX4_ORYSJ,Q6ZJX3_ORYSJ,Q6ZJX8_ORYSJ,Q10N98_ORYSJ Os03g0277700 LOC_Os03g16960 Os03g0277700 OSNPB_030277700,Os08g0136500 OJ1613_G04.12 OSNPB_080136500 P0680F05.51,Os03g0312300 LOC_Os03g19840 Os03g0312300 OsJ_10601 OSNPB_030312300,Os08g0136700 OJ1613_G04.14 OsJ_25968 OSNPB_080136700 P0680F05.53,Os08g0136800 Os08g0136800 OJ1613_G04.16 OsJ_25969 OSNPB_080136800,Os08g0136300 OJ1613_G04.10 OsJ_25966 OSNPB_080136300 P0680F05.49,LOC_Os03g16950 Os03g0277600 OsJ_10339 OSNPB_030277600 ENOG411E1IP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os08g0326700 protein (Fragment) A0A0P0XEJ6 A0A0P0XEJ6_ORYSJ Os08g0326700 OSNPB_080326700 ENOG411E1IS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA long-chain-alcohol O-fatty-acyltransferase NA NA NA NA NA NA NA ENOG411E1IR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q69MI2,A0A0P0XMG4 Q69MI2_ORYSJ,A0A0P0XMG4_ORYSJ Os09g0432900 OJ1081_G10.1 OSJNBa0039E17.34 OSNPB_090432900,Os09g0433300 OSNPB_090433300 ENOG411E1IF TKI1 Q8LJT8,F4IP39 TKI1_ARATH,F4IP39_ARATH TSL-kinase interacting protein 1 (Myb-related protein TKI1),TSL-kinase interacting protein 1 82258,82329 TSL-kinase interacting protein 1 (Myb-related protein TKI1),TSL-kinase interacting protein 1 nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; kinase activity [GO:0016301] TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. locus:2057966; AT2G36960 tsl-kinase interacting protein Myb family transcription factor, putative, expressed (Os03g0241100 protein) (cDNA clone:J033102O16, full insert sequence),Os03g0773100 protein,Os03g0241100 protein (Fragment) Q10PA6,Q0DN59,A0A0P0VVC1 Q10PA6_ORYSJ,Q0DN59_ORYSJ,A0A0P0VVC1_ORYSJ LOC_Os03g13790 Os03g0241100 OsJ_10091 OSNPB_030241100,Os03g0773100 OSNPB_030773100,Os03g0241100 OSNPB_030241100 ENOG411E1IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary thereby controlling ligule and auricle development (By similarity) Squamosa promoter-binding-like protein 8 (OsLG1) (Protein LIGULELESS 1) Q7XPY1 SPL8_ORYSJ SPL8 LG1 Os04g0656500 LOC_Os04g56170 OSJNBa0071I13.12 DISRUPTION PHENOTYPE: Plants show upright attitudes and the absence of laminar joints, ligules and auricules in all the leaves including the flag leaves. {ECO:0000269|PubMed:17594063}. FUNCTION: Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000269|PubMed:17594063}. ENOG411E1IN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os12g0134600 protein (Os12g0134700 protein) (Transferase family protein, expressed) (cDNA clone:002-137-F12, full insert sequence) Q2QY26 Q2QY26_ORYSJ Os12g0134700 LOC_Os12g04080 Os12g0134600 OsJ_36623 OSNPB_120134700 ENOG411E1II NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-n-debenzoyl-2-deoxytaxol n-benzoyltransferase Acyl transferase 9 (OsAT9) (EC 2.3.1.-),Os01g0185300 protein (Fragment) Q9LGQ6,A0A0N7KCG8 AT9_ORYSJ,A0A0N7KCG8_ORYSJ AT9 Os01g0185300 LOC_Os01g09010 P0510F03.18,Os01g0185300 OSNPB_010185300 FUNCTION: Involved in the incorporation of ferulate into the cell wall. May act as arabinoxylan feruloyl transferase. {ECO:0000269|PubMed:20012086}. ENOG411E1I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor bHLH30-like NA NA NA NA NA NA NA ENOG411E1I4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-like A3 (OsEXLA3) (OsEXPL3) (OsaEXPb2.3) Q8H274 EXLA3_ORYSJ EXLA3 EXPL3 Os07g0475400 LOC_Os07g29290 OsJ_24214 P0571D04.118 ENOG411E1I6 A0A1I9LPX1,F4J760,A0A1I9LPX2,F4J761 A0A1I9LPX1_ARATH,F4J760_ARATH,A0A1I9LPX2_ARATH,F4J761_ARATH TPX2 (Targeting protein for Xklp2) protein family 46087,43591,34367,43910 TPX2 (Targeting protein for Xklp2) protein family locus:2082364; AT3G01710 Targeting protein for Xklp2 (TPX2) NA NA NA NA NA NA NA ENOG411E1I0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411E1I2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os04g0208500 protein,OSJNBa0035O13.10 protein (Os04g0208400 protein) (cDNA clone:J023024E15, full insert sequence) Q0JES5,Q7XSL8 Q0JES5_ORYSJ,Q7XSL8_ORYSJ Os04g0208500 Os04g0208500 OSNPB_040208500,Os04g0208400 OSJNBa0035O13.10 OSNPB_040208400 ENOG411E1I9 B9DGF6,Q84JY4,A0A1P8BAD1,B3H7L0,F4J027,A0A1P8B7K7 B9DGF6_ARATH,Q84JY4_ARATH,A0A1P8BAD1_ARATH,B3H7L0_ARATH,F4J027_ARATH,A0A1P8B7K7_ARATH AT3G15770 protein,Uncharacterized protein At5g25360,Uncharacterized protein 18017,19131,24897,18484,17930,23104 AT3G15770 protein,Uncharacterized protein At5g25360,Uncharacterized protein cell division [GO:0051301]; vasculature development [GO:0001944] locus:2093292;,locus:2145442;,locus:4515103481; AT3G15770,AT5G25360,AT4G32342 Inherit from NOG: expressed protein Os02g0201000 protein (Fragment) A0A0P0VG41 A0A0P0VG41_ORYSJ Os02g0201000 OSNPB_020201000 ENOG411EEQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2Fe-2S iron-sulfur cluster binding domain NA NA NA NA NA NA NA ENOG411E0GV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Membrane-associated salt-inducible protein-like (Os02g0829800 protein) (cDNA, clone: J080093E15, full insert sequence) Q6K9T5 Q6K9T5_ORYSJ Os02g0829800 OJ1124_D06.14 OsJ_08983 OSNPB_020829800 ENOG411E0GW EXLB1 O23547 EXLB1_ARATH Expansin-like B1 (At-EXPR1) (AtEXLB1) (AtEXPR1) (Ath-ExpBeta-3.1) 27934 Expansin-like B1 (At-EXPR1) (AtEXLB1) (AtEXPR1) (Ath-ExpBeta-3.1) extracellular region [GO:0005576]; sexual reproduction [GO:0019953] locus:2130444; AT4G17030 expansin-like NA NA NA NA NA NA NA ENOG411E0GT AUG4 Q8GYM3 AUG4_ARATH AUGMIN subunit 4 DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22505726}. FUNCTION: Involved in microtubules reorganization during spindle and phragmoplast development. {ECO:0000269|PubMed:22505726}. 47770 AUGMIN subunit 4 HAUS complex [GO:0070652]; phragmoplast [GO:0009524]; spindle microtubule [GO:0005876]; microtubule minus-end binding [GO:0051011]; cell division [GO:0051301]; spindle assembly [GO:0051225] locus:2015857; AT1G50710 Inherit from euNOG: HAUS augmin-like complex subunit Os02g0119100 protein A0A0P0VDY5 A0A0P0VDY5_ORYSJ Os02g0119100 OSNPB_020119100 ENOG411E0GU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein OJ991113_30.17 protein (Os04g0488400 protein) (cDNA clone:J013159E08, full insert sequence) Q7XUF1 Q7XUF1_ORYSJ OJ991113_30.17 Os04g0488400 OsJ_15268 OSNPB_040488400 ENOG411E0GR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch Kelch repeat-containing F-box family protein, putative, expressed (Os11g0602800 protein) (cDNA clone:J023074L02, full insert sequence) Q2R1J5 Q2R1J5_ORYSJ LOC_Os11g38980 Os11g0602800 OsJ_34423 OSNPB_110602800 ENOG411E0GS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os06g0642600 protein A0A0P0WZ65 A0A0P0WZ65_ORYSJ Os06g0642600 OSNPB_060642600 ENOG411E0GP Q94CF4,F4IAG4 Q94CF4_ARATH,F4IAG4_ARATH Ankyrin repeat family protein (Uncharacterized protein At1g62050),Ankyrin repeat family protein 69949,72457 Ankyrin repeat family protein (Uncharacterized protein At1g62050),Ankyrin repeat family protein apoplast [GO:0048046]; cytoplasm [GO:0005737],cytoplasm [GO:0005737] locus:2036863;,locus:2027342; AT1G62050,AT1G11740 Ankyrin Repeat Os07g0512100 protein A3BK93 A3BK93_ORYSJ Os07g0512100 OsJ_24418 OSNPB_070512100 ENOG411E0GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os06g0285100 protein A0A0P0WVU8 A0A0P0WVU8_ORYSJ Os06g0285100 OSNPB_060285100 ENOG411E0GY PYL2 O80992 PYL2_ARATH Abscisic acid receptor PYL2 (PYR1-like protein 2) (Regulatory components of ABA receptor 14) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA (PubMed:19893533, PubMed:19898420, PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). {ECO:0000269|PubMed:19893533, ECO:0000269|PubMed:19898420, ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015}. 21282 Abscisic acid receptor PYL2 (PYR1-like protein 2) (Regulatory components of ABA receptor 14) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738] locus:2057407; AT2G26040 abscisic acid receptor Abscisic acid receptor PYL9 (PYR1-like protein 2) (OsPYL2) (PYR1-like protein 9) (OsPYL9) (Regulatory components of ABA receptor 9),Os02g0226801 protein (Fragment) Q5Z8S0,A0A0P0VGV8 PYL9_ORYSJ,A0A0P0VGV8_ORYSJ PYL9 PYL2 RCAR9 Os06g0562200 LOC_Os06g36670 P0456F09.29 P0656E03.2,Os02g0226801 OSNPB_020226801 FUNCTION: Involved in abscisic acid (ABA) signaling during seed germination and abiotic stress response. Acts as positive regulator of ABA-mediated inhibition of seed germination, and tolerance to drought and cold stresses (PubMed:26362328). Inhibits the activity of the protein phosphatases PP2C06 and PP2C09 when activated by abscisic acid (ABA) (PubMed:24743650). {ECO:0000269|PubMed:24743650, ECO:0000269|PubMed:26362328}. MISCELLANEOUS: Plants overexpressing PYL9 exhibit abscisic acid (ABA) hypersensitive phenotype during seed germination. Plants overexpressing PYL9 exhibit tolerance to cold and drought stresses. {ECO:0000269|PubMed:26362328}. ENOG411E0GF T1B9.12 Q9SFV1 Q9SFV1_ARATH T1B9.12 protein (Uncharacterized protein At3g07210) 59801 T1B9.12 protein (Uncharacterized protein At3g07210) locus:2098490; AT3G07210 NA Os01g0917200 protein Q5JLC5 Q5JLC5_ORYSJ P0413C03.17 Os01g0917200 OSNPB_010917200 ENOG411E0GE BPE,BHLH79 Q0JXE7,Q9LV17 BPE_ARATH,BH079_ARATH Transcription factor BPE (Basic helix-loop-helix protein 31) (AtbHLH31) (bHLH 31) (Protein BIG PETAL) (Transcription factor EN 88) (bHLH transcription factor bHLH031),Transcription factor bHLH79 (Basic helix-loop-helix protein 79) (AtbHLH79) (bHLH 79) (Transcription factor EN 81) (bHLH transcription factor bHLH079) Larger petal size as a result of increased petal cell size. Large petals-M. Bendahmane-2006 FUNCTION: Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}. 38805,30570 Transcription factor BPE (Basic helix-loop-helix protein 31) (AtbHLH31) (bHLH 31) (Protein BIG PETAL) (Transcription factor EN 88) (bHLH transcription factor bHLH031),Transcription factor bHLH79 (Basic helix-loop-helix protein 79) (AtbHLH79) (bHLH 79) (Transcription factor EN 81) (bHLH transcription factor bHLH079) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; petal morphogenesis [GO:0048446]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Isoform 1 is specifically expressed in flowers, mostly in petals, inflorescence and flower buds. Isoform 2 is expressed ubiquitously (leaves, flowers and stems). {ECO:0000269|PubMed:16902407}. locus:2202867;,locus:2172209; AT1G59640,AT5G62610 Transcription factor NA NA NA NA NA NA NA ENOG411E0GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Casein kinase II, alpha chain, putative, expressed (Os03g0207300 protein),Os03g0207300 protein (Fragment) Q10Q71,A0A0P0VUF6 Q10Q71_ORYSJ,A0A0P0VUF6_ORYSJ Os03g0207300 LOC_Os03g10940 Os03g0207300 OSNPB_030207300,Os03g0207300 OSNPB_030207300 ENOG411E0GA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_CA Os08g0378000 protein (Wall-associated kinase 2-like) (cDNA clone:J013101D18, full insert sequence),Os09g0339300 protein,Os08g0501500 protein,Os12g0478400 protein,Os08g0501700 protein,Os08g0501200 protein (Fragment),Os08g0378300 protein,Os08g0501088 protein (Fragment) Q7EYN5,A0A0P0XLK2,A0A0P0XHX6,A0A0P0YA14,A0A0P0XHN4,A0A0P0XHB5,A0A0P0XFD5,A0A0P0XHC2 Q7EYN5_ORYSJ,A0A0P0XLK2_ORYSJ,A0A0P0XHX6_ORYSJ,A0A0P0YA14_ORYSJ,A0A0P0XHN4_ORYSJ,A0A0P0XHB5_ORYSJ,A0A0P0XFD5_ORYSJ,A0A0P0XHC2_ORYSJ Os08g0378000 OSJNBb0011E04.105 OSNPB_080378000,Os09g0339300 OSNPB_090339300,Os08g0501500 OSNPB_080501500,Os12g0478400 OSNPB_120478400,Os08g0501700 OSNPB_080501700,Os08g0501200 OSNPB_080501200,Os08g0378300 OSNPB_080378300,Os08g0501088 OSNPB_080501088 ENOG411E0GN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch Os02g0202900 protein Q0E2Y9 Q0E2Y9_ORYSJ Os02g0202900 Os02g0202900 OSNPB_020202900 ENOG411E0GK Q8L9M9 Q8L9M9_ARATH Putative RRM-containing protein (RNA binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At5g32450/F18O9_60) 28973 Putative RRM-containing protein (RNA binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At5g32450/F18O9_60) RNA binding [GO:0003723] locus:2145806; AT5G32450 RNA recognition motif Os03g0748900 protein (Putative arginine-rich protein) (RNA recognition motif family protein, expressed) (cDNA clone:006-209-A07, full insert sequence) Q10CV5 Q10CV5_ORYSJ Os03g0748900 OSJNBa0069E14.5 LOC_Os03g53770 Os03g0748900 OsJ_12574 OSNPB_030748900 ENOG411E0GH A0A1P8AXS7,Q9T073,Q9ZQ42,Q0WW54,A0A1P8B588,F4IKF3 A0A1P8AXS7_ARATH,Q9T073_ARATH,Q9ZQ42_ARATH,Q0WW54_ARATH,A0A1P8B588_ARATH,F4IKF3_ARATH SPT2 chromatin protein,SPT2 chromatin protein (Uncharacterized protein AT4g37860),At2g22720/T9I22.16 (Expressed protein) (SPT2 chromatin protein),SPT2 chromatin protein (Uncharacterized protein At2g22720) 62629,40623,37496,63400,38806,75121 SPT2 chromatin protein,SPT2 chromatin protein (Uncharacterized protein AT4g37860),At2g22720/T9I22.16 (Expressed protein) (SPT2 chromatin protein),SPT2 chromatin protein (Uncharacterized protein At2g22720) locus:2137584;,locus:2066035; AT4G37860,AT2G22720 SPT2 Os11g0296800 protein (Fragment) Q0IT79 Q0IT79_ORYSJ Os11g0296800 OSNPB_110296800 ENOG411E0GI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE domain Os03g0212400 protein (SNARE domain containing protein, expressed) (cDNA clone:J033107I23, full insert sequence) Q10Q25 Q10Q25_ORYSJ Os03g0212400 LOC_Os03g11380 OsJ_09892 OSNPB_030212400 ENOG411E0G6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox RING-type E3 ubiquitin transferase (EC 2.3.2.27) A0A0P0VAX7 A0A0P0VAX7_ORYSJ Os01g0865700 OSNPB_010865700 ENOG411E0G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E0G4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: WD repeat-containing protein NA NA NA NA NA NA NA ENOG411E0G5 DUT,DUT1 Q9STG6,A0A1I9LM85 DUT_ARATH,A0A1I9LM85_ARATH Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (EC 3.6.1.23) (dUTP pyrophosphatase) (dUTP-pyrophosphatase-like 1) (AtDUT1),DUTP-PYROPHOSPHATASE-LIKE 1 FUNCTION: This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP, preventing uracil incorporation into DNA. {ECO:0000269|PubMed:20227352}. MISCELLANEOUS: Silencing of DUT leads to high seedling mortality and affects plant growth and flower organ morphology in surviving plants. PATHWAY: Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP (dUTP route): step 2/2. ARA:AT3G46940-MONOMER;MetaCyc:AT3G46940-MONOMER; R-ATH-499943; 3.6.1.23; 3.6.1.23 17557,22338 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (EC 3.6.1.23) (dUTP pyrophosphatase) (dUTP-pyrophosphatase-like 1) (AtDUT1),DUTP-PYROPHOSPHATASE-LIKE 1 cytosol [GO:0005829]; dUTP diphosphatase activity [GO:0004170]; identical protein binding [GO:0042802]; magnesium ion binding [GO:0000287]; DNA repair [GO:0006281]; dUMP biosynthetic process [GO:0006226]; dUTP catabolic process [GO:0046081],dUTP diphosphatase activity [GO:0004170]; dUTP metabolic process [GO:0046080] locus:2102817; AT3G46940 Deoxyuridine 5'-triphosphate Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (EC 3.6.1.23) (dUTP pyrophosphatase),Os03g0669100 protein Q10FF9,B9FP52,A0A0P0W1P1 DUT_ORYSJ,B9FP52_ORYSJ,A0A0P0W1P1_ORYSJ DUT Os03g0669100 LOC_Os03g46640 OSJNBa0039O18.10,Os03g0669100 OsJ_18226 OSNPB_030669100,Os03g0669100 OSNPB_030669100 FUNCTION: This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP, preventing uracil incorporation into DNA. {ECO:0000250}. ENOG411E0G2 GLB3 Q67XG0 GLB3_ARATH Two-on-two hemoglobin-3 (AtGLB3) (2-on-2 hemoglobin-3) DISRUPTION PHENOTYPE: Slight reduction of the number of shoots produced by root explants in vitro; root explants are first cultured on an initial auxin-rich callus induction medium (CIM) followed by a transfer onto a cytokinin-containing shoot induction medium (SIM). {ECO:0000269|PubMed:21741261}. FUNCTION: Hemoglobin-like protein that exhibits an unusual concentration-independent binding of O(2) and CO. May promote shoot organogenesis from root explants in vitro (PubMed:11526234, PubMed:21741261). Inhibits RGLG3 and RGLG4 ubiquitination activity (PubMed:27497447). {ECO:0000269|PubMed:11526234, ECO:0000269|PubMed:21741261, ECO:0000269|PubMed:27497447}. 20197 Two-on-two hemoglobin-3 (AtGLB3) (2-on-2 hemoglobin-3) metal ion binding [GO:0046872]; oxygen binding [GO:0019825]; oxygen transporter activity [GO:0005344]; oxygen transport [GO:0015671]; response to auxin [GO:0009733]; response to hypoxia [GO:0001666] TISSUE SPECIFICITY: Expressed ubiquitously, with higher levels in root tissue than in shoot tissue. {ECO:0000269|PubMed:11526234}. locus:2125662; AT4G32690 Bacterial-like globin Os06g0591600 protein (Putative 2-on-2 hemoglobin) (cDNA clone:J033075H07, full insert sequence) Q69XE4 Q69XE4_ORYSJ Os06g0591600 Os06g0591600 OsJ_21847 OSNPB_060591600 P0502H06.12 ENOG411E0G3 APUM5,APUM6,PUM5 Q9LJX4,Q9C5E7,A0A178VL84 PUM5_ARATH,PUM6_ARATH,A0A178VL84_ARATH Pumilio homolog 5 (APUM-5) (AtPUM5),Pumilio homolog 6, chloroplastic (APUM-6) (AtPUM6),Pumilio 5 FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2. {ECO:0000269|PubMed:19682068}. 106995,96105,105631 Pumilio homolog 5 (APUM-5) (AtPUM5),Pumilio homolog 6, chloroplastic (APUM-6) (AtPUM6),Pumilio 5 cytosol [GO:0005829]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; single-stranded RNA binding [GO:0003727]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; defense response to virus [GO:0051607]; drought recovery [GO:0009819]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],chloroplast [GO:0009507]; mRNA binding [GO:0003729]; regulation of translation [GO:0006417],RNA binding [GO:0003723] locus:2087560;,locus:2117552; AT3G20250,AT4G25880 pumilio homolog Os08g0519700 protein,Os09g0497100 protein (cDNA clone:J023075A04, full insert sequence),Os08g0519800 protein,Os08g0519800 protein (Putative pumilio-family RNA-binding domain-containing protein(PPD1)) (cDNA clone:J013001E01, full insert sequence),Os08g0519700 protein (Fragment) Q0J4D9,Q0J0J6,Q0J4D8,Q6YZW8,A0A0N7KQ56 Q0J4D9_ORYSJ,Q0J0J6_ORYSJ,Q0J4D8_ORYSJ,Q6YZW8_ORYSJ,A0A0N7KQ56_ORYSJ Os08g0519700 Os08g0519700 OSNPB_080519700,Os09g0497100 Os09g0497100 OsJ_29881 OSNPB_090497100,Os08g0519800 Os08g0519800 OSNPB_080519800,Os08g0519800 OJ1003_A09.6 OSNPB_080519800 P0689E12.30,Os08g0519700 OSNPB_080519700 ENOG411E0G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_10 Endo-1,4-beta-xylanase, putative, expressed (Os03g0672900 protein) (Putative xylan xylanohydrolase) (Putative xylan xylanohydrolase isoenzyme) Q84R74 Q84R74_ORYSJ OSJNBa0035I24.13 LOC_Os03g47010 Os03g0672900 OsJ_12065 OSJNBb0113I20.23 OSNPB_030672900 ENOG411E638 A_IG005I10.17 O23071 O23071_ARATH AT4g00310 protein (AT4g00310/A_IG005I10_17) (A_IG005I10.17 protein) (F5I10.17 protein) (Putative membrane lipoprotein) Female gametophyte defective; Embryo defective (inferred)-V. Sundaresan-2005 33187 AT4g00310 protein (AT4g00310/A_IG005I10_17) (A_IG005I10.17 protein) (F5I10.17 protein) (Putative membrane lipoprotein) embryo development ending in seed dormancy [GO:0009793]; megagametogenesis [GO:0009561] locus:2126086; AT4G00310 Inherit from euNOG: WRC NA NA NA NA NA NA NA ENOG411E639 CML39,CML38 Q9SRE7,Q9SRE6 CML39_ARATH,CML38_ARATH Calcium-binding protein CML39 (Calmodulin-like protein 39),Calcium-binding protein CML38 (Calmodulin-like protein 38) FUNCTION: Potential calcium sensor that binds calcium in vitro. {ECO:0000269|PubMed:17579812}. 18146,20113 Calcium-binding protein CML39 (Calmodulin-like protein 39),Calcium-binding protein CML38 (Calmodulin-like protein 38) cytoplasm [GO:0005737]; calcium ion binding [GO:0005509],plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in the zones of elongation and differentiation in seedling roots and at the root-hypocotyl junction. Expressed from stage 12 of flower development in anthers, specifically in pollen. {ECO:0000269|PubMed:17579812}.,TISSUE SPECIFICITY: Expressed in cotyledons and guard cells of young leaves. In mature root, expressed in the epidermis, trichoblasts, young lateral root and root tip. Expressed from stage 9 to 15 of flower development in anther wall. {ECO:0000269|PubMed:17579812}. locus:2030106;,locus:2030141; AT1G76640,AT1G76650 EFh NA NA NA NA NA NA NA ENOG411E630 COX6A Q9T070,A0A1P8B847,F4JSU5 COX6A_ARATH,A0A1P8B847_ARATH,F4JSU5_ARATH Cytochrome c oxidase subunit 6a, mitochondrial (AtCOX6a),Cytochrome c oxidase-like protein FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. 11235,19394,9986 Cytochrome c oxidase subunit 6a, mitochondrial (AtCOX6a),Cytochrome c oxidase-like protein mitochondrial respiratory chain complex IV [GO:0005751]; mitochondrion [GO:0005739]; cytochrome-c oxidase activity [GO:0004129]; enzyme regulator activity [GO:0030234]; aerobic respiration [GO:0009060]; mitochondrial electron transport, cytochrome c to oxygen [GO:0006123],integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex IV [GO:0005751]; cytochrome-c oxidase activity [GO:0004129],mitochondrial respiratory chain complex IV [GO:0005751]; cytochrome-c oxidase activity [GO:0004129] locus:2137554; AT4G37830 Cytochrome c oxidase subunit Cytochrome c oxidase (Cytochrome c oxidase subunit VIa family protein, expressed) (Os03g0772800 protein) (Putative cytochrome c oxidase subunit VIa) Q7XZW4 Q7XZW4_ORYSJ LOC_Os03g56190 Os03g0772800 OsJ_12754 OSJNBb0094O03.7 OSNPB_030772800 ENOG411E631 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0584800 protein (cDNA, clone: J100074H07, full insert sequence),Os02g0585100 protein,Os02g0584700 protein (cDNA, clone: J065178P16, full insert sequence),Os02g0584600 protein,Os02g0585200 protein Q6YY33,Q6YY31,Q6YY34,Q6YY35,Q6YY29 Q6YY33_ORYSJ,Q6YY31_ORYSJ,Q6YY34_ORYSJ,Q6YY35_ORYSJ,Q6YY29_ORYSJ Os02g0584800 OsJ_07294 OSJNBa0016D04.46 OSJNBb0056I22.11 OSNPB_020584800,Os02g0585100 OsJ_07296 OSJNBb0056I22.14 OSNPB_020585100,Os02g0584700 Os02g0584700 OsJ_07293 OSJNBa0016D04.44 OSJNBb0056I22.9 OSNPB_020584700,Os02g0584600 OsJ_07292 OSJNBa0016D04.42 OSJNBb0056I22.7 OSNPB_020584600,Os02g0585200 OsJ_07297 OSJNBb0056I22.16 OSNPB_020585200 ENOG411E632 Q6ID98,Q9FGE8 Q6ID98_ARATH,Q9FGE8_ARATH At5g64480 (Uncharacterized protein At5g64480),Uncharacterized protein 21486,24693 At5g64480 (Uncharacterized protein At5g64480),Uncharacterized protein locus:2179391; AT5G64480 NA NA NA NA NA NA NA NA ENOG411E633 Q8LAA7 Q8LAA7_ARATH Ribosomal protein L35 (Uncharacterized protein At5g45590) (Uncharacterized protein At5g45590/K2N11_6) 20063 Ribosomal protein L35 (Uncharacterized protein At5g45590) (Uncharacterized protein At5g45590/K2N11_6) ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2157151; AT5G45590 ribosomal protein L35 50S ribosomal protein L35 A0A0P0XYA1 A0A0P0XYA1_ORYSJ Os10g0579500 OSNPB_100579500 ENOG411E634 MMG4.18 Q9FMG8 Q9FMG8_ARATH At5g43150 (Elongation factor) (Uncharacterized protein At5g43150) 11258 At5g43150 (Elongation factor) (Uncharacterized protein At5g43150) translation elongation factor activity [GO:0003746] locus:2167826; AT5G43150 NA Expressed protein (Os03g0206400 protein) (cDNA clone:J013072H16, full insert sequence),Os03g0206400 protein Q8H071,A0A0P0VUF9 Q8H071_ORYSJ,A0A0P0VUF9_ORYSJ OSJNBa0014O06.1 LOC_Os03g10860 Os03g0206400 OsJ_09844 OSNPB_030206400,Os03g0206400 OSNPB_030206400 ENOG411E635 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0158700 protein) (cDNA, clone: J065021C04, full insert sequence) (cDNA, clone: J090082H20, full insert sequence),Expressed protein (Os11g0156700 protein) Q2QXF9,Q53ND7 Q2QXF9_ORYSJ,Q53ND7_ORYSJ Os12g0158700 LOC_Os12g06190 Os12g0158700 OSNPB_120158700,Os11g0156700 LOC_Os11g05810 Os11g0156700 OSNPB_110156700 ENOG411E636 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0843700 protein,Os08g0198200 protein (Fragment),Os07g0603500 protein,Os10g0447300 protein,Os07g0423700 protein (Fragment) A2ZZH8,A0A0P0XCX0,A0A0P0X8N7,A0A0P0XUU5,A0A0P0X4Z4 A2ZZH8_ORYSJ,A0A0P0XCX0_ORYSJ,A0A0P0X8N7_ORYSJ,A0A0P0XUU5_ORYSJ,A0A0P0X4Z4_ORYSJ Os01g0843700 OsJ_04047 OSNPB_010843700,Os08g0198200 OSNPB_080198200,Os07g0603500 OSNPB_070603500,Os10g0447300 OSNPB_100447300,Os07g0423700 OSNPB_070423700 ENOG411E637 TIM10 Q9ZW33,F4IKQ3 TIM10_ARATH,F4IKQ3_ARATH Mitochondrial import inner membrane translocase subunit TIM10,Tim10/DDP family zinc finger protein FUNCTION: Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space (By similarity). {ECO:0000250}. 9339,12252 Mitochondrial import inner membrane translocase subunit TIM10,Tim10/DDP family zinc finger protein mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; metal ion binding [GO:0046872]; protein transporter activity [GO:0008565]; protein import into mitochondrial inner membrane [GO:0045039],mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; mitochondrion organization [GO:0007005]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2043097; AT2G29530 Mitochondrial import inner membrane translocase Os03g0825400 protein,Os07g0243100 protein (Small zinc finger-like protein) Q0DM69,Q7XI32 Q0DM69_ORYSJ,Q7XI32_ORYSJ Os03g0825400 Os03g0825400 OsJ_13187 OSNPB_030825400,P0418E08.137 OJ1341_A08.115 Os07g0243100 OsJ_23678 OSNPB_070243100 ENOG411E63H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mechanosensitive ion channel Os04g0561000 protein (Fragment) A0A0N7KJI0 A0A0N7KJI0_ORYSJ Os04g0561000 OSNPB_040561000 ENOG411E63I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Expressed protein (Os03g0357500 protein) Q10L62 Q10L62_ORYSJ Os03g0357500 LOC_Os03g24300 Os03g0357500 OSNPB_030357500 ENOG411E63J DPMS2 Q9CA79 DPM2_ARATH Dolichol-phosphate mannose synthase subunit 2 (DPM synthase subunit 2) (Dol-P-Man synthase1) (Dolichol phosphate-mannose biosynthesis regulatory protein) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21558543}. FUNCTION: Regulates the biosynthesis of dolichol phosphate-mannose. Regulatory subunit of the dolichol-phosphate mannose (DPM) synthase complex; essential for the ER localization and stable expression of DPMS1. {ECO:0000269|PubMed:21558543}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT1G74340-MONOMER;MetaCyc:AT1G74340-MONOMER; R-ATH-162710; 9056 Dolichol-phosphate mannose synthase subunit 2 (DPM synthase subunit 2) (Dol-P-Man synthase1) (Dolichol phosphate-mannose biosynthesis regulatory protein) dolichol-phosphate-mannose synthase complex [GO:0033185]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of endoplasmic reticulum membrane [GO:0030176]; enzyme regulator activity [GO:0030234]; dolichol metabolic process [GO:0019348]; GPI anchor biosynthetic process [GO:0006506]; protein O-linked mannosylation [GO:0035269] locus:2019220; AT1G74340 dolichol phosphate-mannose biosynthesis regulatory Os11g0311550 protein,Os02g0140101 protein (Fragment) A0A0P0Y1I9,A0A0N7KEN5 A0A0P0Y1I9_ORYSJ,A0A0N7KEN5_ORYSJ Os11g0311550 OSNPB_110311550,Os02g0140101 OSNPB_020140101 ENOG411E63M RL6 Q1A173 RADL6_ARATH Protein RADIALIS-like 6 (AtRL6) (Protein RAD-like 6) (Protein RADIALIS-LIKE SANT/MYB 3) (Protein RSM3) FUNCTION: Probable transcription factor. {ECO:0000250}. MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily. {ECO:0000305|PubMed:16463103}. 11249 Protein RADIALIS-like 6 (AtRL6) (Protein RAD-like 6) (Protein RADIALIS-LIKE SANT/MYB 3) (Protein RSM3) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. locus:2025182; AT1G75250 SANT NA NA NA NA NA NA NA ENOG411E63N A0A1I9LRM7,Q9LJ47 A0A1I9LRM7_ARATH,Q9LJ47_ARATH B12D protein 8652,10378 B12D protein integral component of membrane [GO:0016021] locus:2829357; AT3G29970 B12d protein Os07g0604600 protein (cDNA clone:001-107-G08, full insert sequence),Os07g0604700 protein (cDNA, clone: J065216A09, full insert sequence),Os03g0601500 protein Q6Z4G5,Q6Z4G4,Q0DQF2 Q6Z4G5_ORYSJ,Q6Z4G4_ORYSJ,Q0DQF2_ORYSJ Os07g0604600 OsJ_25042 OSJNBb0040H10.18 OSNPB_070604600,Os07g0604700 OsJ_25043 OSJNBb0040H10.19 OSNPB_070604700,Os03g0601500 OSNPB_030601500 ENOG411E63B MAF19.16 Q8L9E3 Q8L9E3_ARATH At5g61220 (LYR family of Fe/S cluster biogenesis protein) R-ATH-1362409; 10115 At5g61220 (LYR family of Fe/S cluster biogenesis protein) locus:2159441; AT5G61220 Complex 1 protein (LYR family) Os08g0239000 protein (cDNA clone:001-108-C11, full insert sequence),Complex 1 family protein, putative, expressed (Os10g0406600 protein) (Putative CGI-203 homolog) (cDNA, clone: J065188E21, full insert sequence) Q0J724,Q7XEU6 Q0J724_ORYSJ,Q7XEU6_ORYSJ Os08g0239000 Os08g0239000 OSNPB_080239000,OSJNBa0060A14.13 LOC_Os10g26640 Os10g0406600 OsJ_31469 OSNPB_100406600 ENOG411E63C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411E63D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E63E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E63F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein OSJNBa0041A02.21 protein (Os04g0603400 protein) Q7XSR6 Q7XSR6_ORYSJ Os04g0603400 Os04g0603400 OSJNBa0041A02.21 OSNPB_040603400 ENOG411E63X Q9FIJ2 NDUA2_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. 10851 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; NADH dehydrogenase (ubiquinone) activity [GO:0008137] locus:2160882; AT5G47890 NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit Os04g0310500 protein (cDNA clone:001-121-D06, full insert sequence) (cDNA clone:J033036J18, full insert sequence),Os04g0310500 protein B7E914,A0A0P0W8G3 B7E914_ORYSJ,A0A0P0W8G3_ORYSJ Os04g0310500 Os04g0310500 OsJ_14233 OSNPB_040310500,Os04g0310500 OSNPB_040310500 ENOG411E63Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0562900 protein A0A0P0X7K1 A0A0P0X7K1_ORYSJ Os07g0562900 OSNPB_070562900 ENOG411E63Z EMB1674 Q8RWD7 EMB74_ARATH Protein EMBRYO DEFECTIVE 1674 Embryo defective; Cotyledon-D. Meinke-2003 FUNCTION: Required for normal embryo development. {ECO:0000269|PubMed:15266054}. 31561 Protein EMBRYO DEFECTIVE 1674 condensed nuclear chromosome kinetochore [GO:0000778]; multicellular organism development [GO:0007275] AT1G58210 SANTA (SANT Associated) NA NA NA NA NA NA NA ENOG411E63P Q9C6P6 STGL4_ARATH Stigma-specific STIG1-like protein 4 FUNCTION: Endosperm-specific cysteine-rich protein that acts downstream of BHLH95/ZOU to modify the interface between embryo and endosperm and mediate the separation of these two tissues during seed development. Necessary for the biogenesis of the embryo sheath, an extracuticular endosperm-derived structure at the surface of the embryo. Required for the separation of embryo and endosperm, and for normal progression of the embryo through the endosperm tissue. Required for the formation of a normal embryonic cuticle. {ECO:0000269|PubMed:28696222}. 19531 Stigma-specific STIG1-like protein 4 locus:2008006; AT1G50650 Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411E63Q MARD1 Q8LGS1 MARD1_ARATH Protein MARD1 (Mediator of ABA-regulated dormancy1) (Senescence-associated protein SAG102) DISRUPTION PHENOTYPE: No visible phenotype, but reduced dormancy and fast germination of the seeds. Strong resistance of the seeds to abscisic acid. {ECO:0000269|PubMed:15159630}. FUNCTION: Involved in seed dormancy control. {ECO:0000269|PubMed:15159630}. 29534 Protein MARD1 (Mediator of ABA-regulated dormancy1) (Senescence-associated protein SAG102) cytoplasmic stress granule [GO:0010494]; P-body [GO:0000932]; metal ion binding [GO:0046872]; response to abscisic acid [GO:0009737]; seed dormancy process [GO:0010162] DEVELOPMENTAL STAGE: Expressed at very low levels during early stages of leaf development, but up-regulated during leaf senescence. {ECO:0000269|PubMed:11402199}. locus:2077284; AT3G63210 Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E63R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os12g0137000 protein,Os11g0140500 protein Q2QY11,A0A0P0XYJ1 Q2QY11_ORYSJ,A0A0P0XYJ1_ORYSJ Os12g0137000 LOC_Os12g04230 OSNPB_120137000,Os11g0140500 OSNPB_110140500 ENOG411E63T O82238,Q9LZI6,A0A1P8AX87,B3H4P7 NDS5A_ARATH,NDS5B_ARATH,A0A1P8AX87_ARATH,B3H4P7_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A,NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B,NADH-ubiquinone oxidoreductase-like protein FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT2G47690-MONOMER;MetaCyc:AT2G47690-MONOMER;,ARA:GQT-1140-MONOMER; 13965,9893,10542,11418 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A,NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B,NADH-ubiquinone oxidoreductase-like protein mitochondrial intermembrane space [GO:0005758]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; mitochondrial respiratory chain complex I assembly [GO:0032981]; oxidation-reduction process [GO:0055114]; photorespiration [GO:0009853],mitochondrial intermembrane space [GO:0005758]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; mitochondrial respiratory chain complex I assembly [GO:0032981]; oxidation-reduction process [GO:0055114] locus:2043428;,locus:2081600; AT2G47690,AT3G62790 NADH dehydrogenase ubiquinone iron-sulfur protein Os08g0556600 protein (Putative fiber protein Fb14) (cDNA clone:J023123D21, full insert sequence) Q6ZJ19 Q6ZJ19_ORYSJ Os08g0556600 Os08g0556600 OJ1150_A11.14 OsJ_28251 OSNPB_080556600 ENOG411E63U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (No apical meristem) protein Os05g0547700 protein,No apical meristem protein, expressed (Os10g0359500 protein) (cDNA clone:J023135B15, full insert sequence) Q0DG86,Q339F9 Q0DG86_ORYSJ,Q339F9_ORYSJ Os05g0547700 Os05g0547700 OSNPB_050547700,LOC_Os10g21560 Os10g0359500 OSNPB_100359500 ENOG411E63V Q8L969 Q8L969_ARATH At4g35980 (Uncharacterized protein At4g35980) 9530 At4g35980 (Uncharacterized protein At4g35980) locus:2125339; AT4G35980 NA Os05g0352800 protein (cDNA clone:J023075K24, full insert sequence) Q5W769 Q5W769_ORYSJ Os05g0352800 OJ1320_D10.5 OsJ_18184 OSNPB_050352800 ENOG411E63W VHA-G3,VATG3 Q9SZH0,A0A1P8B4Z3 VATG3_ARATH,A0A1P8B4Z3_ARATH V-type proton ATPase subunit G3 (V-ATPase subunit G3) (Vacuolar H(+)-ATPase subunit G isoform 3) (Vacuolar proton pump subunit G3),V-type proton ATPase subunit G FUNCTION: Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.,FUNCTION: Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. {ECO:0000256|RuleBase:RU364019}. 12116,8449 V-type proton ATPase subunit G3 (V-ATPase subunit G3) (Vacuolar H(+)-ATPase subunit G isoform 3) (Vacuolar proton pump subunit G3),V-type proton ATPase subunit G vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuole [GO:0005773]; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO:0016820]; proton transport [GO:0015992],vacuolar proton-transporting V-type ATPase complex [GO:0016471]; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO:0016820]; proton transport [GO:0015992] locus:2120790; AT4G25950 V-type proton ATPase subunit NA NA NA NA NA NA NA ENOG411EM9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DSC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF632) Bzip-like transcription factor-like protein (Os09g0387800 protein) (cDNA clone:002-181-A01, full insert sequence),Os09g0542500 protein Q6H584,A0A0P0XQ02 Q6H584_ORYSJ,A0A0P0XQ02_ORYSJ Os09g0387800 OSJNBa0048A13.42 OSJNBa0055N01.10 OSNPB_090387800,Os09g0542500 OSNPB_090542500 ENOG411DSC2 OVA3 Q9FEA2 SYEM_ARATH Glutamate--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.17) (AtERS) (Glutamyl-tRNA synthetase) (GluRS) (Protein OVULE ABORTION 3) DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterogygous plants 26% of ovules are aborted compared to 9% of ovules in wild type siblings. Ovule abortion; Male and female gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 FUNCTION: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). {ECO:0000250|UniProtKB:P46655}. ARA:AT5G64050-MONOMER; Biosynthesis of secondary metabolites (01110),Aminoacyl-tRNA biosynthesis (00970),Metabolic pathways (01100),Porphyrin and chlorophyll metabolism (00860) 6.1.1.17 63466 Glutamate--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.17) (AtERS) (Glutamyl-tRNA synthetase) (GluRS) (Protein OVULE ABORTION 3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glutamate-tRNA ligase activity [GO:0004818]; tRNA binding [GO:0000049]; zinc ion binding [GO:0008270]; chloroplast organization [GO:0009658]; glutamyl-tRNA aminoacylation [GO:0006424]; mitochondrion organization [GO:0007005]; plant ovule development [GO:0048481] locus:2164381; AT5G64050 glutamyl-tRNA synthetase Os02g0121000 protein (Putative glutamate-tRNA ligase) (cDNA clone:J013118M14, full insert sequence) Q6YUS0 Q6YUS0_ORYSJ Os02g0121000 OJ1020_C02.10 OsJ_05163 OSJNBb0088N06.19 OSNPB_020121000 ENOG411DSC0 MYB42,MYB85 Q9SPG1,Q94GA6 Q9SPG1_ARATH,Q94GA6_ARATH Myb domain protein 42 (Putative transcription factor),MYB transcription factor (Myb domain protein 85) (Myb family transcription factor) (Myb-like protein) (Putative transcription factor) 32402,30409 Myb domain protein 42 (Putative transcription factor),MYB transcription factor (Myb domain protein 85) (Myb family transcription factor) (Myb-like protein) (Putative transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2139144;,locus:2132584; AT4G12350,AT4G22680 myb domain protein Os08g0548000 protein (Fragment),Os09g0532900 protein (Putative myb-related transcription factor) (cDNA clone:001-206-D11, full insert sequence) (cDNA clone:J023047I22, full insert sequence),Os09g0532900 protein (Fragment) Q0J3W9,Q69SH8,A0A0P0XPT1 Q0J3W9_ORYSJ,Q69SH8_ORYSJ,A0A0P0XPT1_ORYSJ Os08g0548000 Os08g0548000 OSNPB_080548000,Os09g0532900 OJ1112_E07.2 OsJ_30116 OSNPB_090532900 P0515E01.21,Os09g0532900 OSNPB_090532900 ENOG411DSC1 SULTR4;2,SULTR4;1,SULTR4:2 Q8GYH8,Q9FY46,A0A1I9LSZ5 SUT42_ARATH,SUT41_ARATH,A0A1I9LSZ5_ARATH Probable sulfate transporter 4.2,Sulfate transporter 4.1, chloroplastic (AST82),Sulfate transporter 42 Slightly reduced seed mass-K. Gallardo-2010 FUNCTION: H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation. {ECO:0000250}.,FUNCTION: H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation. R-ATH-174362;R-ATH-427601; 74662,75096,58363 Probable sulfate transporter 4.2,Sulfate transporter 4.1, chloroplastic (AST82),Sulfate transporter 42 integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293],chloroplast membrane [GO:0031969]; integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293],integral component of membrane [GO:0016021]; secondary active sulfate transmembrane transporter activity [GO:0008271] TISSUE SPECIFICITY: Expressed both in roots and leaves. locus:2092517;,locus:2185031; AT3G12520,AT5G13550 sulfate transporter Os09g0240500 protein (Sulfate transporter-like),Os09g0240500 protein (Putative sulfate transporter) (cDNA clone:J013116F03, full insert sequence) (cDNA clone:J023028K03, full insert sequence),Os09g0240500 protein (Fragment) Q68UQ4,Q68UR2,A0A0P0XIQ7,A0A0P0XK18 Q68UQ4_ORYSJ,Q68UR2_ORYSJ,A0A0P0XIQ7_ORYSJ,A0A0P0XK18_ORYSJ OJ1178_D01.11-2 Os09g0240500 OSNPB_090240500,OJ1178_D01.11-1 Os09g0240500 OSNPB_090240500,Os09g0240500 OSNPB_090240500 ENOG411DSC9 ndhT Q9SMS0 NDHT_ARATH NAD(P)H-quinone oxidoreductase subunit T, chloroplastic (EC 1.6.5.-) (DNA J PROTEIN C75) (NAD(P)H dehydrogenase subunit T) (NDH subunit T) (NADH-plastoquinone oxidoreductase subunit T) (Protein CHLORORESPIRATORY REDUCTION J) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:21505067}. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (Probable). Required for the accumulation of both the NDH subcomplex A and NDHS (PubMed:21505067). {ECO:0000269|PubMed:21505067, ECO:0000305}. 1.6.5.- 28496 NAD(P)H-quinone oxidoreductase subunit T, chloroplastic (EC 1.6.5.-) (DNA J PROTEIN C75) (NAD(P)H dehydrogenase subunit T) (NDH subunit T) (NADH-plastoquinone oxidoreductase subunit T) (Protein CHLORORESPIRATORY REDUCTION J) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; cytosol [GO:0005829]; integral component of membrane [GO:0016021]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; oxidoreductase activity [GO:0016491]; quinone binding [GO:0048038]; transport [GO:0006810] locus:2137961; AT4G09350 DNAJ heat shock N-terminal domain-containing protein Os11g0216100 protein (Fragment) A0A0P0Y0Q1 A0A0P0Y0Q1_ORYSJ Os11g0216100 OSNPB_110216100 ENOG411DSCC OTU9 Q8LBW2 Q8LBW2_ARATH At5g04250 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme OTU9) (Uncharacterized protein At5g04250) 39231 At5g04250 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme OTU9) (Uncharacterized protein At5g04250) locus:2146673; AT5G04250 OTU-like cysteine protease family protein OTU-like cysteine protease domain containing protein (OTU-like cysteine protease family protein, expressed) (Os03g0589300 protein) (cDNA clone:J033000K10, full insert sequence) Q5W6J8 Q5W6J8_ORYSJ LOC_Os03g39230 Os03g0589300 OSJNBb0085A04.18 OSNPB_030589300 ENOG411DSCA GAMMACAL1,GAMMACAL2,GAMMA CAL1 Q9FMV1,Q9SMN1,F4KAQ8 GCAL1_ARATH,GCAL2_ARATH,F4KAQ8_ARATH Gamma carbonic anhydrase-like 1, mitochondrial (AtCAL1) (GAMMA CAL1),Gamma carbonic anhydrase-like 2, mitochondrial (AtCAL2) (GAMMA CAL2),Gamma carbonic anhydrase like 1 FUNCTION: Involved in complex I assembly in mitochondria and respiration. ARA:AT5G63510-MONOMER;MetaCyc:AT5G63510-MONOMER;,ARA:AT3G48680-MONOMER;MetaCyc:AT3G48680-MONOMER; 27570,27956,30561 Gamma carbonic anhydrase-like 1, mitochondrial (AtCAL1) (GAMMA CAL1),Gamma carbonic anhydrase-like 2, mitochondrial (AtCAL2) (GAMMA CAL2),Gamma carbonic anhydrase like 1 mitochondrial membrane [GO:0031966]; metal ion binding [GO:0046872],chloroplast [GO:0009507]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; vacuolar membrane [GO:0005774]; metal ion binding [GO:0046872]; photorespiration [GO:0009853]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; vegetative to reproductive phase transition of meristem [GO:0010228],membrane [GO:0016020]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; carbonate dehydratase activity [GO:0004089]; photorespiration [GO:0009853]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2114445;,locus:2167346; AT5G63510,AT3G48680 Gamma carbonic Os02g0508000 protein (Putative mitochondrial NADH:ubiquinone oxidoreductase 29 kDa subunit) (cDNA, clone: J100085H03, full insert sequence) Q6K2G7 Q6K2G7_ORYSJ Os02g0508000 OsJ_06861 OSJNBa0052M16.12 OSNPB_020508000 P0047E05.39 ENOG411DSCM Q8GUJ5 Q8GUJ5_ARATH At4g03260 (Outer arm dynein light chain 1 protein) (Uncharacterized protein At4g03260) 74693 At4g03260 (Outer arm dynein light chain 1 protein) (Uncharacterized protein At4g03260) cell cortex region [GO:0099738]; microtubule binding [GO:0008017]; protein serine/threonine kinase activity [GO:0004674]; drought recovery [GO:0009819]; microtubule cytoskeleton organization [GO:0000226]; negative regulation of growth [GO:0045926]; protein autophosphorylation [GO:0046777] locus:2125507; AT4G03260 LRR Os07g0106100 protein (Protein phosphatase regulatory subunit-like protein) (cDNA clone:J013096G23, full insert sequence) Q7XAK8 Q7XAK8_ORYSJ P0617C02.123 B1317D11.118 Os07g0106100 OSNPB_070106100 ENOG411DSCK AT1G62330.1 F4HYR4,A0A1P8ATR2,F4IAL1 F4HYR4_ARATH,A0A1P8ATR2_ARATH,F4IAL1_ARATH O-fucosyltransferase family protein 73296,69330,67314 O-fucosyltransferase family protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2027129;,locus:2008935; AT1G62330,AT1G11990 DUF246 domain-containing protein At1g04910-like Os06g0239600 protein A0A0P0WUM9 A0A0P0WUM9_ORYSJ Os06g0239600 OSNPB_060239600 ENOG411DSCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain Sulfotransferase (EC 2.8.2.-) (Fragment) A0A0P0XKX5 A0A0P0XKX5_ORYSJ Os09g0256100 OSNPB_090256100 ENOG411DSCV Q9C810,A0A1P8APZ1 Y1342_ARATH,A0A1P8APZ1_ARATH PHD finger protein At1g33420,RING/FYVE/PHD zinc finger superfamily protein 78094,66629 PHD finger protein At1g33420,RING/FYVE/PHD zinc finger superfamily protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],metal ion binding [GO:0046872] locus:2006882; AT1G33420 PHD-finger NA NA NA NA NA NA NA ENOG411DSCW COQ6 F4J6I6,F4J6I5 F4J6I6_ARATH,F4J6I5_ARATH Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial (EC 1.14.13.-) FUNCTION: FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl-4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6. {ECO:0000256|HAMAP-Rule:MF_03193}. PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. {ECO:0000256|HAMAP-Rule:MF_03193}. 1.14.13.- 55287,55071 Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial (EC 1.14.13.-) extrinsic component of mitochondrial inner membrane [GO:0031314]; FAD binding [GO:0071949]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen [GO:0016712]; ubiquinone biosynthetic process [GO:0006744] locus:2093731; AT3G24200 ubiquinone biosynthesis monooxygenase Os03g0839100 protein (Fragment) Q0DLY4 Q0DLY4_ORYSJ Os03g0839100 OSNPB_030839100 ENOG411DSCS PPC6-6 Q9LR65,Q8GY60 P2C01_ARATH,P2C52_ARATH Probable protein phosphatase 2C 1 (AtPP2C01) (EC 3.1.3.16) (AtPPC6;6),Probable protein phosphatase 2C 52 (AtPP2C52) (EC 3.1.3.16) FUNCTION: May act as negative regulator of GCN5. {ECO:0000269|PubMed:18498779}. R-ATH-70895; 3.1.3.16 50975,51851 Probable protein phosphatase 2C 1 (AtPP2C01) (EC 3.1.3.16) (AtPPC6;6),Probable protein phosphatase 2C 52 (AtPP2C52) (EC 3.1.3.16) plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine phosphatase activity [GO:0004722]; protein dephosphorylation [GO:0006470] locus:2020863;,locus:504955459; AT1G03590,AT4G03415 phosphatase 2C Probable protein phosphatase 2C 64 (OsPP2C64) (EC 3.1.3.16) Q8H4S6 P2C64_ORYSJ Os07g0566200 LOC_Os07g37890 OJ1773_H01.121 OsJ_023811 ENOG411DSCQ ARL8C,ARLA1A Q8W4C8,A0A1P8BCT8 ARL8C_ARATH,A0A1P8BCT8_ARATH ADP-ribosylation factor-like protein 8c (AtARL8c) (ADP-ribosylation factor-like A1A) (AtARLA1A),ADP-ribosylation factor-like A1A DISRUPTION PHENOTYPE: In the triple mutants arl8a-1 arl8b-1 arl8c-1, impaired multiplication of tomato mosaic virus (ToMV). {ECO:0000269|PubMed:22174675}. FUNCTION: May play a role in lysosome motility. May play a role in chromosome segregation. {ECO:0000250|UniProtKB:Q9NVJ2}.; FUNCTION: (Microbial infection) Component of tomato mosaic virus (ToMV) RNA replication complexes. Required for tobamovirus multiplication, especially for efficient negative-strand RNA synthesis and viral RNA capping. {ECO:0000269|PubMed:22174675}. R-ATH-6798695; 20573,15386 ADP-ribosylation factor-like protein 8c (AtARL8c) (ADP-ribosylation factor-like A1A) (AtARLA1A),ADP-ribosylation factor-like A1A late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; spindle [GO:0005819]; GTP binding [GO:0005525]; cell cycle [GO:0007049]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; defense response to virus [GO:0051607]; small GTPase mediated signal transduction [GO:0007264],intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264] locus:2151734; AT5G37680 ADP-ribosylation factor-like protein Os02g0732500 protein (Putative ADP-ribosylation factor) (cDNA clone:J023029C05, full insert sequence) Q6Z2K0 Q6Z2K0_ORYSJ Os02g0732500 OsJ_08274 OSNPB_020732500 P0643A10.22 ENOG411DSCX Q9C9Z7,Q9FKB6 Y3857_ARATH,Y5880_ARATH BTB/POZ domain-containing protein At3g08570,BTB/POZ domain-containing protein At5g48800 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 69395,69549 BTB/POZ domain-containing protein At3g08570,BTB/POZ domain-containing protein At5g48800 protein ubiquitination [GO:0016567],plasma membrane [GO:0005886]; protein ubiquitination [GO:0016567] locus:2077763;,locus:2156524; AT3G08570,AT5G48800 BTB POZ domain-containing protein Os12g0117600 protein (Transposon protein, putative, Mutator sub-class, expressed),Os11g0118500 protein (Transposon protein, putative, Mutator sub-class, expressed) Q2QYI7,Q2RBA9 Q2QYI7_ORYSJ,Q2RBA9_ORYSJ LOC_Os12g02540 Os12g0117600 OsJ_35017 OSNPB_120117600,Os11g0118500 LOC_Os11g02620 OsJ_32741 OSNPB_110118500 ENOG411EJD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PsaA and PsaB bind P700 the primary electron donor of photosystem I (PSI) as well as the electron acceptors A0 A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase converting photonic excitation into a charge separation which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0 A1 FX FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin NA NA NA NA NA NA NA ENOG411EM9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ClpB_D2-small NA NA NA NA NA NA NA ENOG411EJD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0307300 protein,Os09g0290600 protein,Os01g0519600 protein,Os04g0316900 protein,Os09g0395800 protein Q5Z4N4,A0A0P0XJN7,A0A0N7KD26,A0A0N7KIU0,A0A0P0XL95 Q5Z4N4_ORYSJ,A0A0P0XJN7_ORYSJ,A0A0N7KD26_ORYSJ,A0A0N7KIU0_ORYSJ,A0A0P0XL95_ORYSJ P0417E03.14 Os06g0307300 OSNPB_060307300,Os09g0290600 OSNPB_090290600,Os01g0519600 OSNPB_010519600,Os04g0316900 OSNPB_040316900,Os09g0395800 OSNPB_090395800 ENOG411E98T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os03g0173700 protein) (cDNA clone:J033027P11, full insert sequence),Os08g0539500 protein Q10R26,A0A0N7KQ80 Q10R26_ORYSJ,A0A0N7KQ80_ORYSJ LOC_Os03g07750 Os03g0173700 OSNPB_030173700,Os08g0539500 OSNPB_080539500 ENOG411E98U Q9LRP6 PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590, mitochondrial 69394 Pentatricopeptide repeat-containing protein At3g15590, mitochondrial chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2092565; AT3G15590 PPR repeat NA NA NA NA NA NA NA ENOG411E98S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: E2F transcription factor NA NA NA NA NA NA NA ENOG411E98P JAL34,JAL5,JAL33,MBP1,JAL39,JAL32,MLP-300B O04310,Q9ZU23,O04311,Q9SAV0,Q9M1A6,O04312,A0A1I9LLA7 JAL34_ARATH,JAL5_ARATH,JAL33_ARATH,JAL7_ARATH,JAL39_ARATH,JAL32_ARATH,A0A1I9LLA7_ARATH Jacalin-related lectin 34,Jacalin-related lectin 5,Jacalin-related lectin 33,Myrosinase-binding protein 1 (Jacalin-related lectin 7) (Myrosinase-binding protein-like At1g52040),Jacalin-related lectin 39,Jacalin-related lectin 32 (Myrosinase-binding protein-like At3g16440) (Myrosinase-binding protein-like protein-300B) (Protein MATERNAL EFFECT EMBRYO ARREST 36),Myrosinase-binding protein-like protein-300B DISRUPTION PHENOTYPE: Defects in female gametophyte development. Arrested during endosperm development. {ECO:0000269|PubMed:15634699}. FUNCTION: Sugar-binding protein showing significant affinity for (Glc alpha(1-4)Glc)(3) maltohexaose, (Glc alpha(1-6)Glc)(3) isomaltohexaose, Gal alpha(1-4)Gal beta(1-4)Glc, GalNAc alpha(1-3)(Fuc alpha(1-2)) and Gal beta(1-3)(Fuc alpha(1-4))GlcNAc beta(1-3)Gal beta(1-4)Glc. {ECO:0000269|PubMed:19021763}.,FUNCTION: Involved in gametophytic development. {ECO:0000269|PubMed:15634699}. 72474,73939,32023,50167,13670,32344,34920 Jacalin-related lectin 34,Jacalin-related lectin 5,Jacalin-related lectin 33,Myrosinase-binding protein 1 (Jacalin-related lectin 7) (Myrosinase-binding protein-like At1g52040),Jacalin-related lectin 39,Jacalin-related lectin 32 (Myrosinase-binding protein-like At3g16440) (Myrosinase-binding protein-like protein-300B) (Protein MATERNAL EFFECT EMBRYO ARREST 36),Myrosinase-binding protein-like protein-300B cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; carbohydrate binding [GO:0030246]; copper ion binding [GO:0005507]; response to cold [GO:0009409],carbohydrate binding [GO:0030246],nucleus [GO:0005634]; plasmodesma [GO:0009506]; carbohydrate binding [GO:0030246]; response to cold [GO:0009409]; response to zinc ion [GO:0010043],nucleus [GO:0005634]; vacuole [GO:0005773]; carbohydrate binding [GO:0030246]; defense response [GO:0006952],carbohydrate binding [GO:0030246]; embryo development ending in seed dormancy [GO:0009793] DEVELOPMENTAL STAGE: Highly expressed in immature flowers, but progressively decrease as flowers mature and senesce. {ECO:0000269|PubMed:11678272}. TISSUE SPECIFICITY: Expressed exclusively in flowers, in male and female organs, petals and pedicels. Not detected in pollen grains or sepals. {ECO:0000269|PubMed:11678272}. locus:2088374;,locus:2034031;,locus:2088369;,locus:2034026;,locus:2097498;,locus:2088364; AT3G16460,AT1G52000,AT3G16450,AT1G52040,AT3G59620,AT3G16440 Jacalin lectin family protein NA NA NA NA NA NA NA ENOG411E98J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411E98K ATXYN4 Q680B7 Q680B7_ARATH 1,4-beta-xylan endohydrolase (Glycosyl hydrolase superfamily protein) ARA:AT2G14690-MONOMER; 64944 1,4-beta-xylan endohydrolase (Glycosyl hydrolase superfamily protein) endo-1,4-beta-xylanase activity [GO:0031176]; carbohydrate metabolic process [GO:0005975] locus:2064241; AT2G14690 Glyco_10 NA NA NA NA NA NA NA ENOG411E98G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411E98B Q9SA88 BBE11_ARATH Berberine bridge enzyme-like 11 (AtBBE-like 11) (EC 1.1.1.-) ARA:AT1G30730-MONOMER; 1.1.1.- 58913 Berberine bridge enzyme-like 11 (AtBBE-like 11) (EC 1.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2204634; AT1G30730 domain-containing protein NA NA NA NA NA NA NA ENOG411E98C EXL4,EXL6,EXL5 Q0WUV7,Q93X94,Q94CH5,F4I0R0 EXL4_ARATH,EXL6_ARATH,EXL5_ARATH,F4I0R0_ARATH GDSL esterase/lipase EXL4 (EC 3.1.1.-) (Family II extracellular lipase 4) (Family II lipase EXL4),GDSL esterase/lipase EXL6 (EC 3.1.1.-) (Family II extracellular lipase 6) (Family II lipase EXL6),GDSL esterase/lipase EXL5 (EC 3.1.1.-) (Family II extracellular lipase 5) (Family II lipase EXL5),GDSL-like Lipase/Acylhydrolase superfamily protein DISRUPTION PHENOTYPE: Reduced pollen fertility. Pollen grain exhibit a partial formation of coat and impaired water absorption and germination capacities. {ECO:0000269|Ref.7}.,DISRUPTION PHENOTYPE: Reduced pollen fertility. Pollen grain exhibit a partial formation of coat and impaired water absorption and germination capacities. {ECO:0000269|Ref.6}. FUNCTION: Required for the formation of pollen coats and male fertility. {ECO:0000269|Ref.7}.,FUNCTION: Required for the formation of pollen coats and male fertility. {ECO:0000269|Ref.6}. ARA:AT1G75910-MONOMER;,ARA:AT1G75930-MONOMER;,ARA:GQT-2408-MONOMER; 3.1.1.- 37911,38596,39946,39255 GDSL esterase/lipase EXL4 (EC 3.1.1.-) (Family II extracellular lipase 4) (Family II lipase EXL4),GDSL esterase/lipase EXL6 (EC 3.1.1.-) (Family II extracellular lipase 6) (Family II lipase EXL6),GDSL esterase/lipase EXL5 (EC 3.1.1.-) (Family II extracellular lipase 5) (Family II lipase EXL5),GDSL-like Lipase/Acylhydrolase superfamily protein pollen coat [GO:0070505]; proteinaceous extracellular matrix [GO:0005578]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042],lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] DEVELOPMENTAL STAGE: Strongly expressed in tapetal cells at the flower developmental stage 10 to middle 12, where the components of pollen coat are synthesized actively. {ECO:0000269|Ref.7}.,DEVELOPMENTAL STAGE: Strongly expressed in tapetal cells at the flower developmental stage 10 to middle 12, where the components of pollen coat are synthesized actively. {ECO:0000269|Ref.6}. TISSUE SPECIFICITY: Flower buds and pollen. {ECO:0000269|PubMed:11431566}.,TISSUE SPECIFICITY: Flower buds. {ECO:0000269|PubMed:11431566}. locus:2204410;,locus:2204425;,locus:2204330; AT1G75910,AT1G75930,AT1G75920 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411E98A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EMP24_GP25L Os08g0469400 protein A0A0P0XGL8 A0A0P0XGL8_ORYSJ Os08g0469400 OSNPB_080469400 ENOG411E988 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Heat shock protein NA NA NA NA NA NA NA ENOG411E989 Q9C9J8 Q9C9J8_ARATH Poly polymerase (Uncharacterized protein At1g76600) (Uncharacterized protein F14G6.20) 23797 Poly polymerase (Uncharacterized protein At1g76600) (Uncharacterized protein F14G6.20) nucleolus [GO:0005730]; nucleus [GO:0005634] locus:2011751; AT1G76600 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E986 Q84RK6,Q56XW8,Q1PEY8,Q9LM64,F4HYE7,F4ILP7,F4HV53,A0A1P8AY80,A0A1P8ARU1 FBL36_ARATH,FBL30_ARATH,FBL35_ARATH,FB16_ARATH,F4HYE7_ARATH,F4ILP7_ARATH,F4HV53_ARATH,A0A1P8AY80_ARATH,A0A1P8ARU1_ARATH F-box/LRR-repeat protein At2g29930,F-box/LRR-repeat protein At1g48400,F-box/LRR-repeat protein At2g29910,Putative F-box protein At1g21990,RNI-like superfamily protein,F-box/RNI-like superfamily protein 52627,55626,39502,52891,47293,38882,43337,42200,40800 F-box/LRR-repeat protein At2g29930,F-box/LRR-repeat protein At1g48400,F-box/LRR-repeat protein At2g29910,Putative F-box protein At1g21990,RNI-like superfamily protein,F-box/RNI-like superfamily protein locus:2045693;,locus:2052085;,locus:2030536;,locus:2007695;,locus:2205000; AT2G29930,AT1G48400,AT2G29910,AT1G21990,AT1G48390,AT1G47920 FBD NA NA NA NA NA NA NA ENOG411E987 UBC6 P42750,A0A1P8B1K4,A0A1P8B1E8 UBC6_ARATH,A0A1P8B1K4_ARATH,A0A1P8B1E8_ARATH Ubiquitin-conjugating enzyme E2 6 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 6) (Ubiquitin carrier protein 6) (Ubiquitin-conjugating enzyme E2-21 kDa 3) (Ubiquitin-protein ligase 6),Ubiquitin-conjugating enzyme 6 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 20785,21137,29608 Ubiquitin-conjugating enzyme E2 6 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 6) (Ubiquitin carrier protein 6) (Ubiquitin-conjugating enzyme E2-21 kDa 3) (Ubiquitin-protein ligase 6),Ubiquitin-conjugating enzyme 6 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511],ATP binding [GO:0005524] TISSUE SPECIFICITY: Expressed in roots, petals, sepals and silique walls. {ECO:0000269|PubMed:16339806, ECO:0000269|PubMed:7948890, ECO:0000269|PubMed:8790283}. locus:2062979; AT2G46030 ubiquitin-conjugating enzyme 6 NA NA NA NA NA NA NA ENOG411E984 GAD2 Q42472,Q56W28 DCE2_ARATH,Q56W28_ARATH Glutamate decarboxylase 2 (GAD 2) (EC 4.1.1.15),Glutamate decarboxylase (EC 4.1.1.15) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:15604684}. FUNCTION: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis. {ECO:0000269|PubMed:9700069}. ARA:AT1G65960-MONOMER; 4.1.1.15 56141,41752 Glutamate decarboxylase 2 (GAD 2) (EC 4.1.1.15),Glutamate decarboxylase (EC 4.1.1.15) calmodulin binding [GO:0005516]; glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; glutamate metabolic process [GO:0006536]; nitrogen compound metabolic process [GO:0006807],glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; glutamate metabolic process [GO:0006536] TISSUE SPECIFICITY: Expressed in roots, inflorescence stems, flowers, siliques and leaves. {ECO:0000269|PubMed:18077464, ECO:0000269|PubMed:9700069, ECO:0000269|PubMed:9701597}. locus:2009704; AT1G65960 glutamate decarboxylase 2 NA NA NA NA NA NA NA ENOG411E985 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SacI homology domain NA NA NA NA NA NA NA ENOG411E982 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar cation proton exchanger NA NA NA NA NA NA NA ENOG411E983 IQD16 Q7XA83 Q7XA83_ARATH At4g10640 (IQ-domain 16) (Uncharacterized protein At4g10640) 48718 At4g10640 (IQ-domain 16) (Uncharacterized protein At4g10640) locus:2139187; AT4G10640 IQ-domain 16 NA NA NA NA NA NA NA ENOG411E980 Q7XJ59 Q7XJ59_ARATH At1g10530 (D-ribose-binding periplasmic protein) (Uncharacterized protein At1g10530) 18812 At1g10530 (D-ribose-binding periplasmic protein) (Uncharacterized protein At1g10530) locus:2194616; AT1G10530 NA NA NA NA NA NA NA NA ENOG411E981 O49508,Q9FNK5 FB237_ARATH,FB285_ARATH F-box protein At4g18380,F-box protein At5g46170 41161,42495 F-box protein At4g18380,F-box protein At5g46170 plasmodesma [GO:0009506]; cytokinin-activated signaling pathway [GO:0009736]; hormone transport [GO:0009914],plasmodesma [GO:0009506]; cytokinin-activated signaling pathway [GO:0009736]; heat acclimation [GO:0010286]; hormone transport [GO:0009914] locus:2124524;,locus:2161383; AT4G18380,AT5G46170 NA NA NA NA NA NA NA NA ENOG411EDN1 PPI2,PPI3B,PPI3A B3H4K7,P0DKC0,P0DKC1 PPI2_ARATH,PPI3B_ARATH,PPI3A_ARATH Proton pump-interactor 2,Proton pump-interactor 3B,Proton pump-interactor 3A FUNCTION: May regulate plasma membrane ATPase activity. {ECO:0000250}. 67324,66452 Proton pump-interactor 2,Proton pump-interactor 3B,Proton pump-interactor 3A endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; regulation of proton transport [GO:0010155] TISSUE SPECIFICITY: Expressed in seedlings and flowers. {ECO:0000269|PubMed:18304198}. locus:2087115; AT3G15340,AT5G36690,AT5G36780 NA NA NA NA NA NA NA NA ENOG411EDN0 GLX2-1 O24495,A0A1P8AXM9,F4IR49 GLO2M_ARATH,A0A1P8AXM9_ARATH,F4IR49_ARATH Hydroxyacylglutathione hydrolase 1, mitochondrial (EC 3.1.2.6) (Glyoxalase II) (Glx II),Glyoxalase 2-1 FUNCTION: Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid. PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 2/2. 3.1.2.6 36500,31708,34751 Hydroxyacylglutathione hydrolase 1, mitochondrial (EC 3.1.2.6) (Glyoxalase II) (Glx II),Glyoxalase 2-1 mitochondrion [GO:0005739]; beta-lactamase activity [GO:0008800]; hydroxyacylglutathione hydrolase activity [GO:0004416]; metal ion binding [GO:0046872]; zinc ion binding [GO:0008270]; antibiotic catabolic process [GO:0017001]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243]; response to amino acid [GO:0043200]; response to anoxia [GO:0034059]; response to salt stress [GO:0009651],beta-lactamase activity [GO:0008800]; hydroxyacylglutathione hydrolase activity [GO:0004416]; zinc ion binding [GO:0008270]; antibiotic catabolic process [GO:0017001]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243] TISSUE SPECIFICITY: Mainly expressed in roots, flowers and flower buds. Also detected in leaves. {ECO:0000269|PubMed:9349270}. locus:2058239; AT2G43430 Glyoxalase 2-1 NA NA NA NA NA NA NA ENOG411DUN9 RER2,RER3 Q9C9Z3,Q9C9Z2 RER2_ARATH,RER3_ARATH Protein RETICULATA-RELATED 2, chloroplastic,Protein RETICULATA-RELATED 3, chloroplastic DISRUPTION PHENOTYPE: Defects in embryo development, seedling germination and early growth. Pale interveinal phenotype due to marked reduction in the density of mesophyll cells in interveinal regions of leaves. {ECO:0000269|PubMed:23596191}. FUNCTION: May play a role in leaf development. {ECO:0000305|PubMed:23596191}.,FUNCTION: May play a role in leaf development. Required for leaf mesophyll cell division in the early stages of leaf organogenesis. {ECO:0000305|PubMed:23596191}. 35950,35252 Protein RETICULATA-RELATED 2, chloroplastic,Protein RETICULATA-RELATED 3, chloroplastic chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; multicellular organism development [GO:0007275],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; embryo development ending in seed dormancy [GO:0009793]; leaf development [GO:0048366]; photoperiodism [GO:0009648]; response to reactive oxygen species [GO:0000302] DEVELOPMENTAL STAGE: During embryo development, expressed from the heart stage onwards and restricted to the adaxial side of the cotyledons in mature embryos. {ECO:0000269|PubMed:23596191}. TISSUE SPECIFICITY: Expressed in root meristem, root vasculature, distal region of young leaf primordia, leaf bundle sheath cells, hydathodes and pollen grains. {ECO:0000269|PubMed:23596191}. locus:2077828;,locus:2077838; AT3G08630,AT3G08640 alphavirus core protein family Os01g0812900 protein Q5VQR0 Q5VQR0_ORYSJ Os01g0812900 OSJNBa0085D07.3 OSNPB_010812900 P0425G02.34 ENOG411DUN8 A0A1P8BBB3,F4K9K8,A0A1P8BBA5 A0A1P8BBB3_ARATH,F4K9K8_ARATH,A0A1P8BBA5_ARATH UBQ, helicase-c and DEAD-like helicase domain-containing protein 126786,126460,130445 UBQ, helicase-c and DEAD-like helicase domain-containing protein ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; nucleic acid binding [GO:0003676]; RNA secondary structure unwinding [GO:0010501] locus:2181524; AT5G08110 helicase Os02g0111900 protein (Putative ATP-dependent RNA helicase),Os07g0606500 protein (Fragment),ATP-dependent RNA helicase-like protein (Os07g0606500 protein) Q6Z8Y2,C7J4H0,Q69J41 Q6Z8Y2_ORYSJ,C7J4H0_ORYSJ,Q69J41_ORYSJ Os02g0111900 Os02g0111900 OJ1399_H05.2 OsJ_05077 OSNPB_020111900 P0501G04.31,Os07g0606500 Os07g0606500 OSNPB_070606500,Os07g0606500 OSJNBa0072I06.9 OSNPB_070606500 P0493C06.24 ENOG411DUN7 SUV3 Q9SMX1,F4KFV7 SUV3M_ARATH,SUV3L_ARATH DExH-box ATP-dependent RNA helicase DExH16, mitochondrial (EC 3.6.4.13) (ATP-dependent RNA helicase SUV3) (AtSUV3) (Protein EMBRYO SAC DEVELOPMENT ARREST 15) (Protein POLLEN DEVELOPMENT DEFECTIVE 17) (Protein POLLEN DEVELOPMENT DEFECTIVE 26) (Protein SUPPRESSOR OF VAR 3),DExH-box ATP-dependent RNA helicase DExH18, mitochondrial (EC 3.6.4.13) (ATP-dependent RNA helicase SUV3L) (AtSUV3L) (Protein SUPPRESSOR OF VAR 3-like) DISRUPTION PHENOTYPE: Variant nuclear number and positions (PubMed:15634699). Pollen development defective (PubMed:19237690). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:19237690}. Defective pollen development.,Pollen development defective. Male and female gametophyte defective; Embryo defective (inferred)-S. McCormick-2009 FUNCTION: Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. ATPase and ATP-dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5'-to-3' direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates (By similarity). Required during pollen development (PubMed:19237690). {ECO:0000250|UniProtKB:Q8IYB8, ECO:0000269|PubMed:19237690}.,FUNCTION: Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. ATPase and ATP-dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5'-to-3' direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates. {ECO:0000250|UniProtKB:Q8IYB8}. 3.6.4.13 63642,88194 DExH-box ATP-dependent RNA helicase DExH16, mitochondrial (EC 3.6.4.13) (ATP-dependent RNA helicase SUV3) (AtSUV3) (Protein EMBRYO SAC DEVELOPMENT ARREST 15) (Protein POLLEN DEVELOPMENT DEFECTIVE 17) (Protein POLLEN DEVELOPMENT DEFECTIVE 26) (Protein SUPPRESSOR OF VAR 3),DExH-box ATP-dependent RNA helicase DExH18, mitochondrial (EC 3.6.4.13) (ATP-dependent RNA helicase SUV3L) (AtSUV3L) (Protein SUPPRESSOR OF VAR 3-like) mitochondrial degradosome [GO:0045025]; mitochondrial nucleoid [GO:0042645]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; DNA helicase activity [GO:0003678]; RNA binding [GO:0003723]; megagametogenesis [GO:0009561]; mitochondrial RNA 3'-end processing [GO:0000965]; pollen development [GO:0009555]; positive regulation of auxin mediated signaling pathway [GO:0010929]; positive regulation of cytokinin-activated signaling pathway [GO:0080038]; positive regulation of gibberellic acid mediated signaling pathway [GO:0009939]; positive regulation of response to salt stress [GO:1901002]; positive regulation of response to water deprivation [GO:1902584]; response to salt stress [GO:0009651]; RNA catabolic process [GO:0006401]; RNA metabolic process [GO:0016070],mitochondrial degradosome [GO:0045025]; mitochondrial nucleoid [GO:0042645]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mitochondrial RNA 3'-end processing [GO:0000965]; RNA catabolic process [GO:0006401] TISSUE SPECIFICITY: Weakly expressed. {ECO:0000269|PubMed:10570936}. locus:2130235;,locus:2151911; AT4G14790,AT5G39840 ATP-dependent RNA helicase ATP-dependent RNA helicase SUV3, mitochondrial (OsSUV3) (EC 3.6.4.13) (Protein SUPPRESSOR OF VAR 3),ATP-dependent RNA helicase SUV3L, mitochondrial (OsSUV3L) (EC 3.6.4.13) (Protein SUPPRESSOR OF VAR 3-like),Os03g0746500 protein (Fragment) Q10D00,Q7X745,A0A0P0W2X3 SUV3M_ORYSJ,SUV3L_ORYSJ,A0A0P0W2X3_ORYSJ SUV3 LOC_Os03g53500 Os03g0746500 OJ1124_H03.19 OsJ_12550,LOC_Os04g38630 Os04g0459800 OsJ_15051 OSJNBa0036B21.27 OSJNBa0072F16.4,Os03g0746500 OSNPB_030746500 FUNCTION: Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner (By similarity). ATPase and ATP-dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5'-to-3' direction (PubMed:23808500). Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates (By similarity). Confers salinity and drought stress tolerances by maintaining both photosynthesis and antioxidant machinery, probably via an increase in plant hormones levels such as gibberellic acid (GA(3)), the cytokinin zeatin (Z) and indole-3-acetic acid (IAA) (PubMed:23808500, PubMed:25184028). {ECO:0000250|UniProtKB:Q8IYB8, ECO:0000269|PubMed:23808500, ECO:0000269|PubMed:25184028}.,FUNCTION: Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. ATPase and ATP-dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5'-to-3' direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates (By similarity). Confers salinity and drought stress tolerances by maintaining both photosynthesis and antioxidant machinery, probably via an increase in plant hormones levels such as gibberellic acid (GA(3)), the cytokinin zeatin (Z) and indole-3-acetic acid (IAA) (By similarity). {ECO:0000250|UniProtKB:Q10D00, ECO:0000250|UniProtKB:Q8IYB8}. ENOG411DUN6 F4HRG2 F4HRG2_ARATH DHHA1 domain protein 36681 DHHA1 domain protein locus:505006182; AT1G53345 NA Os02g0684600 protein (Fragment) A0A0P0VNB2 A0A0P0VNB2_ORYSJ Os02g0684600 OSNPB_020684600 ENOG411DUN3 COX2,; P93285,P92559 COX2_ARATH,M1280_ARATH Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II),Uncharacterized mitochondrial protein AtMg01280 (ORF291) FUNCTION: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1 (By similarity). {ECO:0000250}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07695) is not demonstrated. ARA:ATMG00160-MONOMER;MetaCyc:ATMG00160-MONOMER;,ARA:ATMG01280-MONOMER; 1.9.3.1 29674,33623 Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II),Uncharacterized mitochondrial protein AtMg01280 (ORF291) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; copper ion binding [GO:0005507]; cytochrome-c oxidase activity [GO:0004129]; ATP synthesis coupled electron transport [GO:0042773],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; ATP synthesis coupled electron transport [GO:0042773] locus:504954611; ATMG00160,AT2G07695ATMG01280; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1 (By similarity) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II),Os04g0343050 protein (Fragment),Cytochrome c oxidase subunit 2 P04373,A0A0P0W962,Q8HCP6 COX2_ORYSJ,A0A0P0W962_ORYSJ,Q8HCP6_ORYSJ COX2 COII,Os04g0343050 OSNPB_040343050,cox2 FUNCTION: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.,FUNCTION: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1. {ECO:0000256|RuleBase:RU000457}. ENOG411DUN2 A0A1P8BBM0,Q3E9A9 A0A1P8BBM0_ARATH,Q3E9A9_ARATH GRAS family transcription factor family protein 42890,46216 GRAS family transcription factor family protein locus:2147640; AT5G19970 F-box domain containing protein Os01g0647000 protein,Os01g0647000 protein (Fragment) Q0JKV5,A0A0P0V5V9 Q0JKV5_ORYSJ,A0A0P0V5V9_ORYSJ Os01g0647000 Os01g0647000 OsJ_02813 OSNPB_010647000,Os01g0647000 OSNPB_010647000 ENOG411DUN1 WDR12 Q9LF27,F4KB59 WDR12_ARATH,F4KB59_ARATH Ribosome biogenesis protein WDR12 homolog (Pescadillo-interacting protein 2) (AtPEIP2),Ribosome biogenesis protein WDR12 homolog FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. {ECO:0000255|HAMAP-Rule:MF_03029}.,FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. {ECO:0000256|HAMAP-Rule:MF_03029}. R-ATH-6791226; 47338,44166 Ribosome biogenesis protein WDR12 homolog (Pescadillo-interacting protein 2) (AtPEIP2),Ribosome biogenesis protein WDR12 homolog Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; PeBoW complex [GO:0070545]; plasmodesma [GO:0009506]; preribosome, large subunit precursor [GO:0030687]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470],nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; preribosome, large subunit precursor [GO:0030687]; ribonucleoprotein complex binding [GO:0043021]; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000466]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463] locus:2180952; AT5G15550 Ribosome biogenesis protein WDR12 homolog Ribosome biogenesis protein WDR12 homolog Q8H594 WDR12_ORYSJ WDR12 Os07g0600400 LOC_Os07g40930 OJ1634_B10.122 OsJ_25010 FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. {ECO:0000255|HAMAP-Rule:MF_03029}. ENOG411DUN0 BASS6 Q8VYY4 BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic (Bile acid transporter 4) (Bile acid-sodium symporter family protein 6) FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. R-ATH-425366; 44207 Probable sodium/metabolite cotransporter BASS6, chloroplastic (Bile acid transporter 4) (Bile acid-sodium symporter family protein 6) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2132664; AT4G22840 Bile acid sodium symporter Probable sodium/metabolite cotransporter BASS5, chloroplastic (Bile acid-sodium symporter family protein 5) Q650U0 BASS5_ORYSJ BASS5 Os09g0520600 LOC_Os09g34900 OsJ_30046 P0669G04.12 FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. ENOG411DUNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein Os06g0693100 protein (Putative viral resistance protein) (cDNA clone:J013025A03, full insert sequence),NB-ARC domain containing protein, expressed (Os12g0477100 protein),Os08g0224000 protein,NB-ARC domain containing protein, expressed (Os10g0161400 protein) (Putative NBS-LRR type resistance protein),Os12g0477000 protein Q5Z660,Q2QR00,C7J5Z5,Q7G752,A0A0N7KU10 Q5Z660_ORYSJ,Q2QR00_ORYSJ,C7J5Z5_ORYSJ,Q7G752_ORYSJ,A0A0N7KU10_ORYSJ Os06g0693100 Os06g0693100 OSNPB_060693100 P0532H03.41 P0550B04.11,LOC_Os12g29290 Os12g0477100 OsJ_36065 OSNPB_120477100,Os08g0224000 Os08g0224000 OSNPB_080224000,Os10g0161400 LOC_Os10g07400 Os10g0161400 OsJ_30794 OSJNBa0050E08.17 OSJNBb0042K08.1 OSNPB_100161400,Os12g0477000 OSNPB_120477000 ENOG411DUNY CYSC1 Q9S757,A0A1I9LTP2 CYSC1_ARATH,A0A1I9LTP2_ARATH Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial (EC 2.5.1.47) (EC 4.4.1.9) (Beta-substituted Ala synthase 3;1) (ARAth-Bsas3;1) (Cysteine synthase C1) (AtCYSC1) (O-acetylserine (thiol)-lyase 5),Cysteine synthase C1 DISRUPTION PHENOTYPE: Defective in root hair formation and accumulates cyanide in root tissues. No effects on growth. {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:20935247}. Abnormal root hairs-L. Romero-2010 FUNCTION: Acts as a major beta-cyanoalanine synthase. The cyanoalanine synthesis reaction is more efficient than the cysteine synthase activity. Probably unable to interact with SAT and to form the decameric Cys synthase complex (CSC) and is therefore not an enzymatically true OASTL protein. Probably involved in the detoxification of cyanide that arises from ethylene biosynthesis. Maintains a low level of cyanide for proper root hair development. {ECO:0000269|PubMed:10889265, ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:18223034, ECO:0000269|PubMed:20935247}. ARA:AT3G61440-MONOMER; 4.4.1.9; 2.5.1.47; 4.4.1.9 39927,36319 Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial (EC 2.5.1.47) (EC 4.4.1.9) (Beta-substituted Ala synthase 3;1) (ARAth-Bsas3;1) (Cysteine synthase C1) (AtCYSC1) (O-acetylserine (thiol)-lyase 5),Cysteine synthase C1 chloroplast [GO:0009507]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; cysteine synthase activity [GO:0004124]; L-3-cyanoalanine synthase activity [GO:0050017]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cyanide catabolic process [GO:0019500]; cyanide metabolic process [GO:0019499]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535]; detoxification of nitrogen compound [GO:0051410]; immune response [GO:0006955]; root hair cell development [GO:0080147],mitochondrion [GO:0005739]; cysteine synthase activity [GO:0004124]; L-3-cyanoalanine synthase activity [GO:0050017]; cyanide metabolic process [GO:0019499]; cysteine biosynthetic process from serine [GO:0006535] TISSUE SPECIFICITY: Mainly expressed in mature rosette leaves. Also detected in roots, young rosette leaves, stems, cauline leaves, and flowers. {ECO:0000269|PubMed:10845460, ECO:0000269|PubMed:18024555}. locus:2082837; AT3G61440 cysteine synthase Cysteine synthase (EC 2.5.1.47) Q7XS58 Q7XS58_ORYSJ Os04g0165700 Os04g0165700 OSJNBa0019G23.9 OSNPB_040165700 ENOG411DUNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF724) Expressed protein (Os10g0194300 protein) Q8H858 Q8H858_ORYSJ Os10g0194300 LOC_Os10g11820 OSJNBb0005F01.21 OSNPB_100194300 ENOG411EJDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DUNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alanine--glyoxylate aminotransferase 2 Os03g0338000 protein (Fragment) A0A0P0VX85 A0A0P0VX85_ORYSJ Os03g0338000 OSNPB_030338000 ENOG411DUNT ATG18B Q8H1Q8,F4JQB6 AT18B_ARATH,F4JQB6_ARATH Autophagy-related protein 18b (AtATG18b),Autophagy 18 B-like protein FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity). {ECO:0000250}. R-ATH-1632852; 39877,33940 Autophagy-related protein 18b (AtATG18b),Autophagy 18 B-like protein cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; pre-autophagosomal structure membrane [GO:0034045]; vacuolar membrane [GO:0005774]; phosphatidylinositol-3,5-bisphosphate binding [GO:0080025]; phosphatidylinositol-3-phosphate binding [GO:0032266]; autophagy of mitochondrion [GO:0000422]; nucleophagy [GO:0044804]; protein lipidation [GO:0006497]; protein localization to pre-autophagosomal structure [GO:0034497]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, stems, flowers and leaves. {ECO:0000269|PubMed:15860012}. locus:2118801; AT4G30510 Autophagy-related protein Os02g0791800 protein (Transport protein-like) (cDNA clone:J013074J03, full insert sequence) Q6K9M2 Q6K9M2_ORYSJ Os02g0791800 OJ1249_F12.5 OsJ_08682 OSNPB_020791800 ENOG411DUNS PCMP-A3 Q9C9I3 PP115_ARATH Pentatricopeptide repeat-containing protein At1g71460, chloroplastic 77487 Pentatricopeptide repeat-containing protein At1g71460, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2825319; AT1G71460 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DUNR LAP3,LAP1,LAP2 Q8RX72,P30184,Q944P7,A0A1P8B582,F4INR3 AMPL3_ARATH,AMPL1_ARATH,AMPL2_ARATH,A0A1P8B582_ARATH,F4INR3_ARATH Leucine aminopeptidase 3, chloroplastic (EC 3.4.11.1) (Leucyl aminopeptidase 3) (AtLAP3) (Proline aminopeptidase 3) (EC 3.4.11.5) (Prolyl aminopeptidase 3),Leucine aminopeptidase 1 (EC 3.4.11.1) (Leucyl aminopeptidase 1) (AtLAP1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1),Leucine aminopeptidase 2, chloroplastic (EC 3.4.11.1) (Leucyl aminopeptidase 2) (AtLAP2) (Proline aminopeptidase 2) (EC 3.4.11.5) (Prolyl aminopeptidase 2),Cytosol aminopeptidase family protein FUNCTION: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (By similarity). Possesses Cys-Gly dipeptidase activity (PubMed:25716890). {ECO:0000250|UniProtKB:P30184, ECO:0000269|PubMed:25716890}.,FUNCTION: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (Probable). Possesses leucine aminopeptidase activity against the model substrate leucine-amido methyl coumarin (PubMed:22493451). Possesses Cys-Gly dipeptidase activity. In addition, can cleave Cys-Leu and Leu-Cys dipeptides (PubMed:25716890). {ECO:0000269|PubMed:22493451, ECO:0000269|PubMed:25716890, ECO:0000305|PubMed:1555602}.; FUNCTION: Functions as molecular chaperone to protect proteins from heat-induced damage. {ECO:0000269|PubMed:22493451}.,FUNCTION: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (By similarity). Possesses leucine aminopeptidase activity against the model substrate leucine-amido methyl coumarin (PubMed:22493451). Does not seem to possess Cys-Gly dipeptidase activity (PubMed:25716890). {ECO:0000250|UniProtKB:P30184, ECO:0000269|PubMed:22493451, ECO:0000269|PubMed:25716890}.; FUNCTION: Functions as molecular chaperone to protect proteins from heat-induced damage. {ECO:0000269|PubMed:22493451}. 3.4.11.1; 3.4.11.5 61290,54509,61307,63828,50593 Leucine aminopeptidase 3, chloroplastic (EC 3.4.11.1) (Leucyl aminopeptidase 3) (AtLAP3) (Proline aminopeptidase 3) (EC 3.4.11.5) (Prolyl aminopeptidase 3),Leucine aminopeptidase 1 (EC 3.4.11.1) (Leucyl aminopeptidase 1) (AtLAP1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1),Leucine aminopeptidase 2, chloroplastic (EC 3.4.11.1) (Leucyl aminopeptidase 2) (AtLAP2) (Proline aminopeptidase 2) (EC 3.4.11.5) (Prolyl aminopeptidase 2),Cytosol aminopeptidase family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; aminopeptidase activity [GO:0004177]; dipeptidase activity [GO:0016805]; magnesium ion binding [GO:0000287]; manganese ion binding [GO:0030145]; metalloexopeptidase activity [GO:0008235],chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; vacuole [GO:0005773]; aminopeptidase activity [GO:0004177]; dipeptidase activity [GO:0016805]; manganese ion binding [GO:0030145]; metalloexopeptidase activity [GO:0008235]; response to cadmium ion [GO:0046686],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; vacuole [GO:0005773]; aminopeptidase activity [GO:0004177]; magnesium ion binding [GO:0000287]; manganese ion binding [GO:0030145]; metalloexopeptidase activity [GO:0008235]; leaf senescence [GO:0010150],cytoplasm [GO:0005737]; aminopeptidase activity [GO:0004177]; manganese ion binding [GO:0030145]; metalloexopeptidase activity [GO:0008235] locus:2126669;,locus:2047500;,locus:2126684; AT4G30910,AT2G24200,AT4G30920 leucine aminopeptidase Putative leucine aminopeptidase 1 (EC 3.4.11.1) (Leucyl aminopeptidase 1) (LAP 1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1),Leucine aminopeptidase 2, chloroplastic (EC 3.4.11.1) (Leucyl aminopeptidase 2) (LAP 2) (Proline aminopeptidase 2) (EC 3.4.11.5) (Prolyl aminopeptidase 2) Q2QSB9,Q6K669 AMPL1_ORYSJ,AMPL2_ORYSJ Os12g0434400 LOC_Os12g24650,Os02g0794700 LOC_Os02g55140 OJ1695_H09.4 P0700F06.36 FUNCTION: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (By similarity). {ECO:0000250}. ENOG411DUNQ UGT74B1 O48676 U74B1_ARATH UDP-glycosyltransferase 74B1 (EC 2.4.1.-) (N-hydroxythioamide S-beta-glucosyltransferase) (EC 2.4.1.195) (Thiohydroximate S-glucosyltransferase) DISRUPTION PHENOTYPE: Plants are severely dwarfed, partially sterile and display decreased glucosinolate levels and increased IAA concentrations. {ECO:0000269|PubMed:15584955}. FUNCTION: Involved in the biosynthesis of glucosinolate. In in vitro assay, may use phenylacetothiohydroximate (PATH), but not phenylacetic acid (PAA), indole-3-acetic acid (IAA) or salicylic acid (SA) as substrate. Specific for the thiohydroximate functional group and does not glucosylate the carboxylate group or a hydroxyl group. {ECO:0000269|PubMed:15584955}. ARA:AT1G24100-MONOMER;MetaCyc:AT1G24100-MONOMER; Biosynthesis of secondary metabolites (01110),2-Oxocarboxylic acid metabolism (01210),Glucosinolate biosynthesis (00966),Tryptophan metabolism (00380) 2.4.1.-; 2.4.1.195 51002 UDP-glycosyltransferase 74B1 (EC 2.4.1.-) (N-hydroxythioamide S-beta-glucosyltransferase) (EC 2.4.1.195) (Thiohydroximate S-glucosyltransferase) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; thiohydroximate beta-D-glucosyltransferase activity [GO:0047251]; UDP-glucose: 4-methylthiobutylhydroximate S-glucosyltransferase activity [GO:0102659]; UDP-glucose: 6-methylthiohexylhydroximate S-glucosyltransferase activity [GO:0103100]; UDP-glucose: 9-methylthiononylhydroximate S-glucosyltransferase activity [GO:0103103]; UDP-glucose:5-methylthiopentylhydroximate S-glucosyltransferase activity [GO:0103099]; UDP-glucose:7-methylthioheptylhydroximate S-glucosyltransferase activity [GO:0103101]; UDP-glucose:8-methylthiooctylhydroximate S-glucosyltransferase activity [GO:0103102]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; glucosinolate biosynthetic process [GO:0019761] TISSUE SPECIFICITY: Expressed in the vasculature, the apical meristems of roots, shoots and inflorescence, and the junction of organ or branches. {ECO:0000269|PubMed:15584955}. locus:2032387; AT1G24100 UDP-glycosyltransferase 74B1-like NA NA NA NA NA NA NA ENOG411DUNP MYH19.180 Q9FLD4 Q9FLD4_ARATH At5g40020 (Pathogenesis-related thaumatin superfamily protein) (Thaumatin-like protein) 28094 At5g40020 (Pathogenesis-related thaumatin superfamily protein) (Thaumatin-like protein) locus:2178077; AT5G40020 Thaumatin family Os10g0412700 protein (Thaumatin family protein, expressed) (cDNA clone:002-168-D12, full insert sequence) Q7XEP5 Q7XEP5_ORYSJ LOC_Os10g27280 Os10g0412700 OSNPB_100412700 ENOG411DUNN PCMP-H85 Q9LIC3,A0A1I9LQL2 PP227_ARATH,A0A1I9LQL2_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein 70736,67038 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mitochondrial mRNA modification [GO:0080156],zinc ion binding [GO:0008270] locus:2091546; AT3G13770 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DUNM NPF3.1,AtNPF3.1 Q9SX20,A0A1P8AQH5 PTR18_ARATH,A0A1P8AQH5_ARATH Protein NRT1/ PTR FAMILY 3.1 (AtNPF3.1),Major facilitator superfamily protein DISRUPTION PHENOTYPE: Slower growth and delayed bolting. Nitrite accumulation in leaves. {ECO:0000269|PubMed:17566055}. FUNCTION: May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. {ECO:0000269|PubMed:17566055}. R-ATH-427975;R-ATH-6798695; 66213,62755 Protein NRT1/ PTR FAMILY 3.1 (AtNPF3.1),Major facilitator superfamily protein integral component of membrane [GO:0016021]; intracellular vesicle [GO:0097708]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; gibberellic acid homeostasis [GO:0010336]; nitrate assimilation [GO:0042128],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in shoots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17481610}. locus:2026884; AT1G68570 nitrite transporter Os06g0264500 protein (Putative nitrite transporter) (cDNA clone:J013148A07, full insert sequence) Q5Z6P7 Q5Z6P7_ORYSJ Os06g0264500 Os06g0264500 OJ1001_B06.7 OsJ_20894 OSJNBa0037N01.54 OSNPB_060264500 ENOG411DUNK Q94BQ5,A0A1P8BFS7,A8MS02,F4K5P6,F4K5P9,F4K5P7 Q94BQ5_ARATH,A0A1P8BFS7_ARATH,A8MS02_ARATH,F4K5P6_ARATH,F4K5P9_ARATH,F4K5P7_ARATH Folate receptor family protein (Uncharacterized protein At5g27830),Folate receptor family protein 33104,30429,33332,35725,29919,33587 Folate receptor family protein (Uncharacterized protein At5g27830),Folate receptor family protein integral component of membrane [GO:0016021]; response to oxidative stress [GO:0006979],integral component of membrane [GO:0016021] locus:2180320; AT5G27830 Folate receptor family Os02g0592500 protein (cDNA clone:J023060F11, full insert sequence) Q69L70 Q69L70_ORYSJ Os02g0592500 Os02g0592500 OSJNBa0016G10.14 OSNPB_020592500 ENOG411DUNJ DEGP1 O22609 DEGP1_ARATH Protease Do-like 1, chloroplastic (EC 3.4.21.-) (Protein DEGRADATION OF PERIPLASMIC PROTEINS 1) (DEGP PROTEASE 1) FUNCTION: Serine protease that is required at high temperature. May be involved in the degradation of damaged proteins. In vivo, can degrade beta-casein. {ECO:0000269|PubMed:21877139, ECO:0000269|PubMed:9507020}. 3.4.21.- 46674 Protease Do-like 1, chloroplastic (EC 3.4.21.-) (Protein DEGRADATION OF PERIPLASMIC PROTEINS 1) (DEGP PROTEASE 1) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; nucleus [GO:0005634]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; serine-type endopeptidase activity [GO:0004252]; serine-type peptidase activity [GO:0008236]; photosystem II repair [GO:0010206]; protein catabolic process [GO:0030163]; response to cytokinin [GO:0009735] locus:2086420; AT3G27925 Protease Do-like 1 Os05g0568900 protein (Putative DegP protease) (cDNA clone:006-307-E05, full insert sequence) (cDNA clone:J013152N11, full insert sequence) Q6AUN5 Q6AUN5_ORYSJ Os05g0568900 OJ1781_H11.23 OSJNBa0040E06.5 OSNPB_050568900 ENOG411DUNI TRP4,TRP3 Q9FFY9,Q9C7B1 TRP4_ARATH,TRP3_ARATH Telomere repeat-binding protein 4 (H-protein promoter binding factor-1) (AtTBP1) (Telomeric DNA-binding protein 1),Telomere repeat-binding protein 3 (Protein TRF-LIKE 9) (Telomeric DNA-binding protein 2) (AtTBP2) DISRUPTION PHENOTYPE: Viable, but deregulation of telomere length control. {ECO:0000269|PubMed:17272298}. FUNCTION: Binds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:11513850, ECO:0000269|PubMed:17272298}.,FUNCTION: Binds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}. 70484,68759 Telomere repeat-binding protein 4 (H-protein promoter binding factor-1) (AtTBP1) (Telomeric DNA-binding protein 1),Telomere repeat-binding protein 3 (Protein TRF-LIKE 9) (Telomeric DNA-binding protein 2) (AtTBP2) chromosome, telomeric region [GO:0000781]; nuclear telomere cap complex [GO:0000783]; DNA binding [GO:0003677]; double-stranded telomeric DNA binding [GO:0003691]; telomeric DNA binding [GO:0042162]; regulation of transcription, DNA-templated [GO:0006355]; telomere maintenance [GO:0000723]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351],nuclear telomere cap complex [GO:0000783]; DNA binding, bending [GO:0008301]; double-stranded telomeric DNA binding [GO:0003691]; telomeric DNA binding [GO:0042162]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and roots. {ECO:0000269|PubMed:11513850, ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}.,TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and roots. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}. locus:2159048;,locus:2101232; AT5G13820,AT3G12560 Telomere repeat-binding protein NA NA NA NA NA NA NA ENOG411DUNH UGT92A1 Q9LXV0 U92A1_ARATH UDP-glycosyltransferase 92A1 (EC 2.4.1.-) ARA:AT5G12890-MONOMER; 2.4.1.- 54868 UDP-glycosyltransferase 92A1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2182300; AT5G12890 UDP-glycosyltransferase 92A1-like Glycosyltransferase (EC 2.4.1.-) Q7F8X6 Q7F8X6_ORYSJ Os04g0506000 Os04g0506000 OsJ_15384 OSJNBb0002J11.3 OSJNBb0116K07.18 OSNPB_040506000 ENOG411DUNG SDN5 Q8L7M4,A0A1P8BEI3 SDN5_ARATH,A0A1P8BEI3_ARATH Small RNA degrading nuclease 5 (EC 3.1.-.-),Polynucleotidyl transferase, ribonuclease H-like superfamily protein FUNCTION: Probable 3'-5' exonuclease degrading single-stranded small RNAs. 3.1.-.- 62802,63083 Small RNA degrading nuclease 5 (EC 3.1.-.-),Polynucleotidyl transferase, ribonuclease H-like superfamily protein nucleus [GO:0005634]; exonuclease activity [GO:0004527]; nucleic acid binding [GO:0003676],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2145244; AT5G25800 small RNA degrading nuclease Os12g0188900 protein (Fragment) A0A0P0Y7W0 A0A0P0Y7W0_ORYSJ Os12g0188900 OSNPB_120188900 ENOG411DUNF RLK1 Q39202 RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (EC 2.7.11.1) (Receptor-like protein kinase 1) 2.7.11.1 93751 G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (EC 2.7.11.1) (Receptor-like protein kinase 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468] AT5G60900 G-type lectin S-receptor-like serine threonine-protein kinase G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 (OsLecRK1) (EC 2.7.11.1) (OsRLCK134),G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 (OsLecRK2) (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 (OsLecRK3) (EC 2.7.11.1) (OsRLCK135),G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 (OsLecRK4) (EC 2.7.11.1) (OsRLCK136),OSJNBa0022H21.6 protein (Os04g0475100 protein),OSJNBa0022H21.7 protein (Os04g0475200 protein) Q7FAZ3,Q7FAZ2,Q0JEU6,Q7FAZ0,Q7XKV1,Q7XKV0 LERK1_ORYSJ,LERK2_ORYSJ,LERK3_ORYSJ,LERK4_ORYSJ,Q7XKV1_ORYSJ,Q7XKV0_ORYSJ LECRK1 Os04g0201900 LOC_Os04g12540 OsJ_13804 OSJNBb0005B05.5,LECRK2 Os04g0202300 LOC_Os04g12560 OsJ_13805 OSJNBb0005B05.6,LECRK3 Os04g0202500 LOC_Os04g12580 OSJNBb0005B05.7,LECRK4 Os04g0202800 LOC_Os04g12600 OsJ_13808 OSJNBb0005B05.8,Os04g0475100 OsJ_15168 OSJNBa0022H21.6 OSNPB_040475100,Os04g0475200 OsJ_15170 OSJNBa0022H21.7 OSNPB_040475200 FUNCTION: Involved in innate immunity. Required for the expression of defense-related genes PR1A, LOX2 and CHS1 upon biotic stresses. Required for basal resistance to the fungal blast (M.grisea), bacterial blight (X.oryzae pv. oryzae, Xoo) and the herbivorous insect brown planthopper (N.lugens, BPH). May be involved in several defense signaling pathways. Involved in the promotion of seed germination. Required for the expression of alpha-amylase genes during seed germination (By similarity). Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH). Member of the BPH3 (BPH resistance locus 3) cluster which contains LECRK1, LECRK2 and LECRK3 (PubMed:25485617). {ECO:0000250|UniProtKB:A0A075F7E9, ECO:0000269|PubMed:25485617}.,FUNCTION: Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH). Member of the BPH3 (BPH resistance locus 3) cluster which contains LECRK1, LECRK2 and LECRK3. {ECO:0000269|PubMed:25485617}.,FUNCTION: Does not seem to be involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH). {ECO:0000269|PubMed:25485617}. ENOG411DUNE F9K21.210 Q0WQD5,Q9M1E4,F4JXH8,F4JXH7,F4IIR1 Q0WQD5_ARATH,Q9M1E4_ARATH,F4JXH8_ARATH,F4JXH7_ARATH,F4IIR1_ARATH RNA binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At2g28540),RNA binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein F9K21.210),RNA binding (RRM/RBD/RNP motifs) family protein 107051,108438,108009,108252,98239 RNA binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At2g28540),RNA binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein F9K21.210),RNA binding (RRM/RBD/RNP motifs) family protein CCR4-NOT complex [GO:0030014]; RNA binding [GO:0003723]; ubiquitin-protein transferase activity [GO:0004842]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288],CCR4-NOT complex [GO:0030014]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; ubiquitin-protein transferase activity [GO:0004842]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288],RNA binding [GO:0003723] locus:2056563;,locus:2085617;,locus:2144000; AT2G28540,AT3G45630,AT5G60170 RNA recognition Os11g0102800 protein (Fragment),Os12g0102400 protein (RNA recognition motif family protein, expressed),Os01g0209500 protein Q7XXS1,Q2QYY3,A0A0P0UZM5 Q7XXS1_ORYSJ,Q2QYY3_ORYSJ,A0A0P0UZM5_ORYSJ Os11g0102800 Os11g0102800 OSNPB_110102800,Os12g0102400 LOC_Os12g01190 Os12g0102400 OSNPB_120102400,Os01g0209500 OSNPB_010209500 ENOG411DUND Q9LUG5 RPF2_ARATH Ribosome production factor 2 homolog (Brix domain-containing protein 1 homolog) (Ribosome biogenesis protein RPF2 homolog) 35728 Ribosome production factor 2 homolog (Brix domain-containing protein 1 homolog) (Ribosome biogenesis protein RPF2 homolog) nucleolus [GO:0005730]; rRNA binding [GO:0019843]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; ribosomal large subunit assembly [GO:0000027] locus:2088015; AT3G23620 ribosome production factor 2 Ribosome production factor 2 homolog (Brix domain-containing protein 1 homolog) (Ribosome biogenesis protein RPF2 homolog),Os05g0506900 protein (cDNA clone:002-114-D09, full insert sequence) Q9AWM9,B7EZK3 RPF2_ORYSJ,B7EZK3_ORYSJ Os01g0513800 LOC_Os01g33030 OsJ_01990 P0504D03.20,Os05g0506900 OSNPB_050506900 ENOG411DUNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 Formin-like protein 14 (OsFH14),Os12g0147300 protein,Os06g0246200 protein,Os12g0487832 protein (Fragment) Q0DLG0,A0A0P0Y724,A0A0P0WV28,A0A0P0YA65 FH14_ORYSJ,A0A0P0Y724_ORYSJ,A0A0P0WV28_ORYSJ,A0A0P0YA65_ORYSJ FH14 Os05g0104000 LOC_Os05g01350 P0668H12.11,Os12g0147300 OSNPB_120147300,Os06g0246200 OSNPB_060246200,Os12g0487832 OSNPB_120487832 ENOG411DUNB DTX48 Q9SLV0 DTX48_ARATH Protein DETOXIFICATION 48 (AtDTX48) (Multidrug and toxic compound extrusion protein 48) (MATE protein 48) (Protein ABNORMAL SHOOT 4) (Protein BUSH-AND-CHLOROTIC-DWARF 1) (Protein BCD1) (Protein ZRIZI) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21257605, ECO:0000269|PubMed:22150160}. FUNCTION: Functions as a multidrug and toxin extrusion transporter. Contributes to iron homeostasis during stress responses and senescence (PubMed:22150160). Could be involved in specifying the lateral organ initiation rate (PubMed:21257605). May act as a negative regulator of hypocotyl cell elongation in the light (PubMed:26160579). {ECO:0000269|PubMed:21257605, ECO:0000269|PubMed:22150160, ECO:0000269|PubMed:26160579}. MISCELLANEOUS: Plants overexpressing DTX48 in initiating leaves are short, produce leaves much faster than wild-type plants and show enhanced growth of axillary buds (PubMed:21257605). Overexpression of DTX48 alters shoot developmental programs leading to a loss of apical dominance phenotype (PubMed:26160579). {ECO:0000269|PubMed:21257605, ECO:0000269|PubMed:26160579}. R-ATH-425366; 57847 Protein DETOXIFICATION 48 (AtDTX48) (Multidrug and toxic compound extrusion protein 48) (MATE protein 48) (Protein ABNORMAL SHOOT 4) (Protein BUSH-AND-CHLOROTIC-DWARF 1) (Protein BCD1) (Protein ZRIZI) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; Golgi transport complex [GO:0017119]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; organelle [GO:0043226]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; transmembrane transporter activity [GO:0022857]; drug transmembrane transport [GO:0006855]; drug transport [GO:0015893]; iron ion homeostasis [GO:0055072]; regulation of plant organ formation [GO:1905428]; response to abscisic acid [GO:0009737]; response to absence of light [GO:0009646]; response to heat [GO:0009408]; response to nematode [GO:0009624]; response to osmotic stress [GO:0006970]; root morphogenesis [GO:0010015]; transport [GO:0006810] TISSUE SPECIFICITY: Highly expressed in shoot apices relative to leaves (PubMed:21257605). At vegetative stages, highly expressed at the stipules. At reproductive stages, most highly expressed in the mature pollen. Also expressed in the tips of sepals (PubMed:26160579). {ECO:0000269|PubMed:21257605, ECO:0000269|PubMed:26160579}. locus:2016615; AT1G58340 Multidrug and toxin extrusion protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) (Fragment) A0A0P0VV15 A0A0P0VV15_ORYSJ Os03g0229500 OSNPB_030229500 ENOG411DUNA A0A1P8BEZ3,A0A1P8BEU8,A0A1P8BEU1,F4K4A6 A0A1P8BEZ3_ARATH,A0A1P8BEU8_ARATH,A0A1P8BEU1_ARATH,F4K4A6_ARATH Tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 20476,22822,30384,26768 Tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) isomerase activity [GO:0016853],chloroplast [GO:0009507]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; isomerase activity [GO:0016853]; photosynthesis [GO:0015979] locus:2146420; AT5G27390 Inherit from KOG: ribosomal protein L45 Os05g0401300 protein Q6ATY3 Q6ATY3_ORYSJ Os05g0401300 OSJNBa0035J16.10 OSNPB_050401300 ENOG411EJDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os01g0232200 protein A0A0P0V0J2 A0A0P0V0J2_ORYSJ Os01g0232200 OSNPB_010232200 ENOG411EMA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMA9 Q9SX94 Q9SX94_ARATH F16N3.9 protein (Transducin/WD40 repeat-like superfamily protein) 38706 F16N3.9 protein (Transducin/WD40 repeat-like superfamily protein) locus:2015423; AT1G47610 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMAE Q9SUT4 Q9SUT4_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein AT4g11270) 159377 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein AT4g11270) cytosol [GO:0005829] locus:2128288; AT4G11270 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMAG MED18 Q9SJZ6 MED18_ARATH Mediator of RNA polymerase II transcription subunit 18 DISRUPTION PHENOTYPE: Deregulated expression of glutaredoxins GRX480, GRXS13 and thioredoxin TRX-h5 leading to enhanced susceptibility to fungal infection (e.g. B.cinerea and A.brassicicola). Altered RNA polymerase II occupancy and histone H3 lysine tri-methylation (H3K36me3) of target genes. Insensitivity to abscisic acid (ABA) and to the ethylene precursor 1-aminocyclopropane-1-carboxylic acid (ACC). Delayed flowering. {ECO:0000269|PubMed:24451981}. FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors (PubMed:22021418, PubMed:24451981). Involved in the regulation of histone H3 lysine tri-methylation (H3K36me3). Associates with the promoter, coding and terminator regions of target genes suggesting its function in transcription initiation, elongation and termination. Multifunctional protein which regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea and A.brassicicola), flowering time and responses to hormones (e.g. abscisic acid ABA and ethylene) through interactions with distinct transcription factors (PubMed:24451981). {ECO:0000269|PubMed:22021418, ECO:0000269|PubMed:24451981}. 23365 Mediator of RNA polymerase II transcription subunit 18 core mediator complex [GO:0070847]; mediator complex [GO:0016592]; nucleus [GO:0005634]; RNA polymerase II transcription cofactor activity [GO:0001104]; abscisic acid-activated signaling pathway [GO:0009738]; carpel development [GO:0048440]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of transcription, DNA-templated [GO:0045892]; petal development [GO:0048441]; regulation of defense response to fungus [GO:1900150]; regulation of DNA-templated transcription, elongation [GO:0032784]; regulation of DNA-templated transcription, initiation [GO:2000142]; regulation of DNA-templated transcription, termination [GO:0031554]; regulation of histone H3-K36 trimethylation [GO:2001253]; regulation of photoperiodism, flowering [GO:2000028]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; regulation of vernalization response [GO:0010219]; response to abscisic acid [GO:0009737]; response to ethylene [GO:0009723]; sepal development [GO:0048442]; specification of floral organ number [GO:0048833]; stamen development [GO:0048443]; termination of RNA polymerase II transcription [GO:0006369] locus:2041243; AT2G22370 Mediator of RNA polymerase II transcription subunit NA NA NA NA NA NA NA ENOG411EMAF PFD1 Q94AF7,F4IL65 Q94AF7_ARATH,F4IL65_ARATH At2g07350/T13E11.12 (PREFOLDIN 1),PREFOLDIN 1 14605,14476 At2g07350/T13E11.12 (PREFOLDIN 1),PREFOLDIN 1 cytosol [GO:0005829]; prefoldin complex [GO:0016272]; unfolded protein binding [GO:0051082]; cytoskeleton organization [GO:0007010]; protein folding [GO:0006457],prefoldin complex [GO:0016272]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2054845; AT2G07340 Prefoldin subunit Os02g0462900 protein A0A0P0VIQ7 A0A0P0VIQ7_ORYSJ Os02g0462900 OSNPB_020462900 ENOG411EMAH Q941E5 Q941E5_ARATH AT3g50680/T3A5_60 (Anti-muellerian hormone type-2 receptor) (Uncharacterized protein At3g50685) (Uncharacterized protein At3g50685/At3g50680) 16137 AT3g50680/T3A5_60 (Anti-muellerian hormone type-2 receptor) (Uncharacterized protein At3g50685) (Uncharacterized protein At3g50685/At3g50680) integral component of membrane [GO:0016021] locus:505006395; AT3G50685 NA NA NA NA NA NA NA NA ENOG411EMAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EMAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EMAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase Os06g0639300 protein (Fragment) A0A0P0WZ67 A0A0P0WZ67_ORYSJ Os06g0639300 OSNPB_060639300 ENOG411EMAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 Formin-like protein 8 (OsFH8) Q10Q99 FH8_ORYSJ FH8 Os03g0204100 LOC_Os03g10680 ENOG411EMAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 Formin-like protein 16 (OsFH16),Os02g0739100 protein A3AB67,A0A0N7KG25 FH16_ORYSJ,A0A0N7KG25_ORYSJ FH16 Os02g0739100 LOC_Os02g50570 OsJ_008039,Os02g0739100 OSNPB_020739100 ENOG411EMAX FH8 O04532 FH8_ARATH Formin-like protein 8 (AtFH8) (AtFORMIN-1) FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. Interacts with the barbed end of actin filaments and nucleates actin-filament polymerization in vitro. {ECO:0000269|PubMed:15923338, ECO:0000269|PubMed:16313636}. 83603 Formin-like protein 8 (AtFH8) (AtFORMIN-1) cell-cell junction [GO:0005911]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; actin binding [GO:0003779]; actin filament binding [GO:0051015]; profilin binding [GO:0005522]; actin nucleation [GO:0045010]; cell tip growth [GO:0009932] locus:2020568; AT1G70140 formin-like protein 8 NA NA NA NA NA NA NA ENOG411EMAZ FH11 Q9MA60 FH11_ARATH Formin-like protein 11 (AtFH11) FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. {ECO:0000250}. 98535 Formin-like protein 11 (AtFH11) integral component of membrane [GO:0016021]; actin binding [GO:0003779] locus:2079807; AT3G05470 Formin-like protein NA NA NA NA NA NA NA ENOG411E58C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EDY4 CYP81F2 Q9LVD6 C81F2_ARATH Cytochrome P450 81F2 (EC 1.14.-.-) (Protein INDOLE GLUCOSINOLATE MODIFIER 1) FUNCTION: Involved in indole glucosinolate biosynthesis. Catalyzes hydroxylation reactions of the glucosinolate indole ring. Converts indol-3-yl-methylglucosinolate (I3M) to 4-hydroxy-indol-3-yl-methylglucosinolate (4OH-I3M) and/or 1-hydroxy-indol-3-yl-methylglucosinolate (1OH-I3M) intermediates. These hydroxy intermediates are converted to 4-methoxy-indol-3-yl-methylglucosinolate (4MO-I3M) and 1-methoxy-indol-3-yl-methylglucosinolate (1MO-I3M) by indole glucosinolate methyltransferase 1 and 2 (IGMT1 and IGMT2) (PubMed:21317374). Contributes to defense against the green peach aphid (Myzus persicae), a generalist phloem-feeding herbivore (PubMed:19293369). Required for the biosynthesis of antifungal indole glucosinolate metabolites (PubMed:19095900, PubMed:20605856, PubMed:20408997, PubMed:21317374). Required for the pathogen-induced accumulation of 4MO-I3M, which in turn is activated by the atypical BGLU26/PEN2 myrosinase (PubMed:19095900). Required for the biosynthesis of Trp-derived antifungal compounds and non-host resistance to the necrotrophic fungal pathogen Plectosphaerella cucumerina (PubMed:20408997). Required for resistance to the non-adapted fungal pathogen Colletotrichum gloeosporioides (PubMed:20605856). {ECO:0000269|PubMed:19095900, ECO:0000269|PubMed:19293369, ECO:0000269|PubMed:20408997, ECO:0000269|PubMed:20605856, ECO:0000269|PubMed:21317374}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:AT5G57220-MONOMER; 1.14.-.- 55693 Cytochrome P450 81F2 (EC 1.14.-.-) (Protein INDOLE GLUCOSINOLATE MODIFIER 1) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cellular response to hypoxia [GO:0071456]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to insect [GO:0002213]; glucosinolate metabolic process [GO:0019760]; indole glucosinolate biosynthetic process [GO:0009759]; indole glucosinolate metabolic process [GO:0042343]; induced systemic resistance [GO:0009682]; response to bacterium [GO:0009617] locus:2165635; AT5G57220 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EDY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDYA MEA O65312,A0A1P8AVN9 MEDEA_ARATH,A0A1P8AVN9_ARATH Histone-lysine N-methyltransferase MEDEA (EC 2.1.1.43) (Maternal embryogenesis control protein) (Protein EMBRYO DEFECTIVE 173) (Protein FERTILIZATION-INDEPENDENT SEED 1) (Protein SET DOMAIN GROUP 5),SET domain-containing protein Heterozygous embryos abort if the mutant allele is derived from the female but develop normally if it is derived from the male. Embryos derived from mutant eggs abort irrespective of the paternal contribution. Thus the mea mutant displays maternal-effect embryo lethality.,In the homozygous progeny: During early stages of embryogenesis the development of mea-1 embryos is indistinguishable from wild-type siblings in cleared or sectioned specimens. Visible differences between wild-type and mea-1 embryos began at the late globular stage. Globular mea-1 embryos show excess cell proliferation and enlarge radially symmetrical. When wild-type embryos reach the mid to late heart stage sibling mea-1 embryos are still globular and contain small vacuolated cells with curvilinear cell walls and sometimes irregular cell divisions in the ground tissue and procambium. Suspensor and hypophysis are normal and cotyledons initiate synchronously as in the wild type. Thus despite increased cell proliferation and occasional irregular cytokinesis morphogenetic progression is normal. However each stage is prolonged and includes more division cycles and morphogenesis is delayed. As a consequence giant heart stage mea-1 embryos are present along with late torpedo or cotyledonary stage wild-type embryos. mea-1 heart stage embryos have supernumerary cell layers. When wild-type siblings are fully differentiated most mea-1 embryos have reached the late heart stage and are up to 10 times larger than normal. mea embryos degenerate during desiccation. These results suggest that mea controls cell proliferation during embryogenesis allowing morphogenesis to progress normally albeit slowly. Endosperm development in mea-1 seeds is indistinguishable from that of the wild type at early stages. When cellularization begins normally in wild-type seeds at the transition from the globular to the heart stage no cellularization is observed in sibling mea-1 seeds. Although nuclear divisions take place more slowly in mea-1 endosperm the distribution of endosperm nuclei is as in the wild type. Partial cellularization occurs at the micropyle when mea-1 embryos reach the late heart stage in desiccating seeds but because fewer nuclei have been generated most of the centra,The homozygous progeny is embryo-lethal.,Mutant homozygous mea embryo sacs accumulated 45 times more maternal transcripts than wild-type before fertilization and it persisted after fertilization (7.5 times more transcripts 4 d after pollination.,Similar to non-revertant mea-1 mutant. Embryo and female gametophyte defective; Incomplete penetrance of endosperm formation without fertilization; 50% defective seeds-R. Fischer-1998 FUNCTION: Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. Required to prevent the proliferation of the central cell of the female gametophyte by repressing target genes before fertilization. After fertilization, it probably also regulates the embryo and endosperm proliferation and anteroposterior organization during seed development. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. Interacts with the promoter and repress the transcription of genes such as PHE1 and PHE2, that are paternally active and maternally silenced genes. {ECO:0000269|PubMed:10097185, ECO:0000269|PubMed:11250158, ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:15151989, ECO:0000269|PubMed:15619622, ECO:0000269|PubMed:9545225}. MISCELLANEOUS: The MEA locus is imprinted. Maternal inherited gene is expressed in the ovule (the egg and the central cell), while the paternal inherited gene is silenced in the pollen. After fertilization, only the maternal inherited allele is expressed. The paternal repression is dependent on DDM1 protein, which may methylate the paternal locus, while the maternal inherited allele is allowed by the DME protein, which may antagonize or suppress DDM1 dependent methylation, and activates its transcription. R-ATH-212300;R-ATH-2559580; 2.1.1.43 79310,67056 Histone-lysine N-methyltransferase MEDEA (EC 2.1.1.43) (Maternal embryogenesis control protein) (Protein EMBRYO DEFECTIVE 173) (Protein FERTILIZATION-INDEPENDENT SEED 1) (Protein SET DOMAIN GROUP 5),SET domain-containing protein nucleus [GO:0005634]; PcG protein complex [GO:0031519]; histone-lysine N-methyltransferase activity [GO:0018024]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of endosperm development [GO:2000014]; regulation of gene expression by genetic imprinting [GO:0006349]; response to absence of light [GO:0009646]; seed morphogenesis [GO:0048317]; transcription, DNA-templated [GO:0006351],histone-lysine N-methyltransferase activity [GO:0018024] DEVELOPMENTAL STAGE: Expressed both maternally and zygotically. Expressed in both egg and central cell before fertilization. After fertilization, it is expressed in the embryo and endosperm, then decreases during seed maturation. TISSUE SPECIFICITY: Expressed in unpollinated siliques that contain maturing gametophytes. Not expressed at early stages of floral development during early megagametogenesis. {ECO:0000269|PubMed:10962025, ECO:0000269|PubMed:11114524, ECO:0000269|PubMed:9545225}. locus:2196110; AT1G02580 SET NA NA NA NA NA NA NA ENOG411EDYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Voltage gated chloride channel NA NA NA NA NA NA NA ENOG411EDYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family NA NA NA NA NA NA NA ENOG411EDYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: exportin Expressed protein (Os11g0513900 protein),Os11g0513500 protein (Fragment) Q2R3M0,Q0ISJ2 Q2R3M0_ORYSJ,Q0ISJ2_ORYSJ LOC_Os11g31470 Os11g0513900 OSNPB_110513900,Os11g0513500 OSNPB_110513500 ENOG411EDYQ F4J320 F4J320_ARATH Dentin sialophosphoprotein-like protein 25154 Dentin sialophosphoprotein-like protein locus:504955739; AT3G29385 NA NA NA NA NA NA NA NA ENOG411EDYZ F4J0B7,A0A1I9LRU0 AATP8_ARATH,A0A1I9LRU0_ARATH AAA-ATPase At3g28570, mitochondrial (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein 3.6.1.3 52149,52962 AAA-ATPase At3g28570, mitochondrial (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2095502; AT3G28570 AAA-type ATPase family protein NA NA NA NA NA NA NA ENOG411EI1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NifU-like N terminal domain NA NA NA NA NA NA NA ENOG411EI1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative glycosyl hydrolase of unknown function (DUF1680) NA NA NA NA NA NA NA ENOG411EI15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0590500 protein,Os11g0109666 protein (Fragment) A0A0P0WE59,A0A0N7KSB5 A0A0P0WE59_ORYSJ,A0A0N7KSB5_ORYSJ Os04g0590500 OSNPB_040590500,Os11g0109666 OSNPB_110109666 ENOG411EI16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI11 F28J7.6 Q9S7S5 Q9S7S5_ARATH F28J7.6 protein (F28J7.6/F28J7.6) (F4P13.28 protein) (Transmembrane protein) 9053 F28J7.6 protein (F28J7.6/F28J7.6) (F4P13.28 protein) (Transmembrane protein) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; root hair elongation [GO:0048767] locus:2082324; AT3G01730 NA NA NA NA NA NA NA NA ENOG411EI13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0813700 protein) (Putative cysteine proteinase),Os03g0778300 protein,Os03g0788000 protein,Os03g0787800 protein Q75HG4,Q8S7H6,Q6F3C0,A0A0P0W3U6 Q75HG4_ORYSJ,Q8S7H6_ORYSJ,Q6F3C0_ORYSJ,A0A0P0W3U6_ORYSJ LOC_Os03g59880 Os03g0813700 OsJ_13087 OSJNBa0024F18.23 OSNPB_030813700,OSJNBa0010I09.15 Os03g0778300 LOC_Os03g56690 OsJ_12794 OSNPB_030778300,Os03g0788000 LOC_Os03g57400 OsJ_12874 OSJNBb0024J04.15 OSNPB_030788000,Os03g0787800 OSNPB_030787800 ENOG411EI18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF814) NA NA NA NA NA NA NA ENOG411EDNE FPP5 O65649,Q9ZQ21 FPP5_ARATH,Q9ZQ21_ARATH Filament-like plant protein 5 (AtFPP5),Filament-like protein (DUF869) (Uncharacterized protein At2g24470) 111881,10352 Filament-like plant protein 5 (AtFPP5),Filament-like protein (DUF869) (Uncharacterized protein At2g24470) locus:2135154;,locus:2061042; AT4G36120,AT2G24470 Plant protein of unknown function (DUF869) NA NA NA NA NA NA NA ENOG411EBYD F13I12.100,F13I12.90,F13I12.60,F13I12.50 Q9SD68,Q9SD69,Q9SD72,Q9SD73,A0A1I9LR69,F4JAB3,A0A1I9LMA2,A0A1I9LQL0,F4JAB7,F4JAB9,A0A1I9LR68,A0A1I9LQK9,A0A1I9LMA1 Q9SD68_ARATH,Q9SD69_ARATH,Q9SD72_ARATH,Q9SD73_ARATH,A0A1I9LR69_ARATH,F4JAB3_ARATH,A0A1I9LMA2_ARATH,A0A1I9LQL0_ARATH,F4JAB7_ARATH,F4JAB9_ARATH,A0A1I9LR68_ARATH,A0A1I9LQK9_ARATH,A0A1I9LMA1_ARATH Beta-D-glucan exohydrolase-like protein (Glycosyl hydrolase family protein),At3g47000 (Beta-D-glucan exohydrolase-like protein) (Glycosyl hydrolase family protein),Glycosyl hydrolase family protein ARA:AT3G47050-MONOMER;,ARA:AT3G47040-MONOMER;,ARA:AT3G47010-MONOMER;,ARA:AT3G47000-MONOMER; 67251,69649,66265,66309,47129,66098,46828,49309,70583,42947,49222,66860,49102 Beta-D-glucan exohydrolase-like protein (Glycosyl hydrolase family protein),At3g47000 (Beta-D-glucan exohydrolase-like protein) (Glycosyl hydrolase family protein),Glycosyl hydrolase family protein plasma membrane [GO:0005886]; vacuole [GO:0005773]; beta-glucosidase activity [GO:0008422]; glucan catabolic process [GO:0009251],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],plasma membrane [GO:0005886]; beta-glucosidase activity [GO:0008422]; glucan catabolic process [GO:0009251],cytosol [GO:0005829]; plasma membrane [GO:0005886]; beta-glucosidase activity [GO:0008422]; glucan catabolic process [GO:0009251] locus:2075571;,locus:2075636;,locus:2075621;,locus:2075681; AT3G47050,AT3G47040,AT3G47010,AT3G47000 Glycosyl hydrolase family 3 N terminal domain NA NA NA NA NA NA NA ENOG411EBYE TGA5,OBF5 Q39163,A0A1R7T3A8 TGA5_ARATH,A0A1R7T3A8_ARATH Transcription factor TGA5 (Ocs element-binding factor 5) (OBF5) (bZIP transcription factor 26) (AtbZIP26),OCS-element binding factor 5 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. 36890,34816 Transcription factor TGA5 (Ocs element-binding factor 5) (OBF5) (bZIP transcription factor 26) (AtbZIP26),OCS-element binding factor 5 nucleus [GO:0005634]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response, incompatible interaction [GO:0009814]; salicylic acid mediated signaling pathway [GO:0009863]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in roots. locus:2169409; AT5G06960 ocs-element binding factor 5 NA NA NA NA NA NA NA ENOG411EBYB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os06g0556300 protein (cDNA clone:001-124-D09, full insert sequence) (cDNA clone:J033048O21, full insert sequence) Q0DBK3 Q0DBK3_ORYSJ Os06g0556300 Os06g0556300 OsJ_21681 OSNPB_060556300 ENOG411EBYC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBYT Q9M8X1,Q9M8X4,Q9M8X5,Q9M8X3,F4J3K8 GL12_ARATH,GL14_ARATH,GL15_ARATH,GL13_ARATH,F4J3K8_ARATH Putative germin-like protein subfamily 1 member 2,Germin-like protein subfamily 1 member 4,Germin-like protein subfamily 1 member 5,Germin-like protein subfamily 1 member 3,RmlC-like cupins superfamily protein FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 24649,24102,24051,24424,26176 Putative germin-like protein subfamily 1 member 2,Germin-like protein subfamily 1 member 4,Germin-like protein subfamily 1 member 5,Germin-like protein subfamily 1 member 3,RmlC-like cupins superfamily protein apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735],extracellular region [GO:0005576]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2102995;,locus:2102965;,locus:2103015;,locus:2103045; AT3G04150,AT3G04180,AT3G04190,AT3G04170 Cupin domain NA NA NA NA NA NA NA ENOG411EBYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411EBYR ASK21,ASK20 Q8LF97,A8MQG7 ASK21_ARATH,ASK20_ARATH SKP1-like protein 21 (AtSK21),SKP1-like protein 20 (AtSK20) FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664;R-ATH-983168; 40022,40734 SKP1-like protein 21 (AtSK21),SKP1-like protein 20 (AtSK20) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in young seedlings, roots, leaves, floral stems, inflorescences, and siliques. {ECO:0000269|PubMed:12970487}. locus:505006407;,locus:2050709; AT3G61415,AT2G45950 Skp1 NA NA NA NA NA NA NA ENOG411EBYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411EHV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSK6 ACR4 Q9LX29 ACR4L_ARATH Serine/threonine-protein kinase-like protein ACR4 (EC 2.7.11.1) (Protein CRINKLY 4) (AtCR4) DISRUPTION PHENOTYPE: Reduced fertility due to abnormal embryogenesis and integument formation. Abnormal seed coat and leaves epidermis, with transient fusion between adjacent developing leaves and reduced hydrophobicity of leaf surfaces. {ECO:0000269|PubMed:11978870, ECO:0000269|PubMed:12900442, ECO:0000269|PubMed:15255860}. Increased number of lateral root meristems initate.,Increased number of lateral root meristems greater than acr4 single mutant alone. Few lateral roots; Abnormal integuments; Increased lateral root meristem number-G. Ingram-2003 FUNCTION: Controls formative cell division in meristems, including root tips and lateral root initiation zones of the pericycle, in response to CLE40 signal. Acts with CLE40p peptide as a ligand-receptor pair in a signal transduction pathway, coordinating movement of the root tip and organization of cell divisions in the root meristem. Required during embryogenesis and development, probably for the differentiation of protoderm and epidermal cells. Involved in the regulation of cellular organization during the development of sepal margins and ovule integument outgrowth. Can phosphorylate ALE2. {ECO:0000269|PubMed:11978870, ECO:0000269|PubMed:12900442, ECO:0000269|PubMed:15255860, ECO:0000269|PubMed:15772284, ECO:0000269|PubMed:17376810, ECO:0000269|PubMed:18948541, ECO:0000269|PubMed:19398337}. 2.7.11.1 98181 Serine/threonine-protein kinase-like protein ACR4 (EC 2.7.11.1) (Protein CRINKLY 4) (AtCR4) cell surface [GO:0009986]; endocytic vesicle [GO:0030139]; integral component of membrane [GO:0016021]; multivesicular body membrane [GO:0032585]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein kinase activity [GO:0019199]; embryo development ending in seed dormancy [GO:0009793]; flower morphogenesis [GO:0048439]; lateral root formation [GO:0010311]; plant epidermal cell differentiation [GO:0090627]; protein autophosphorylation [GO:0046777]; regulation of asymmetric cell division [GO:0009786]; root cap development [GO:0048829]; root development [GO:0048364] DEVELOPMENTAL STAGE: First observed in all young embryo cells. At the globular stage, restricted to apical region. Later confined to the protoderm area leading to cotyledon primordia and the root apex. In mature embryos, mostly localized in the L1 layer of the SAM, apical regions of cotyledons and the root apex, and, to a lower extent, in protoderm of other regions. In seedlings, expressed in developing tissues of the shoot, including the SAM and epidermis of organs primordia, especially in L1 layer cells. In roots, localized in quiescent center (QC) central cells, columella initials and cells below the QC, the lateral root cap (LRC) and the initial cells destined to give rise to the root epidermal cell file and the LRC. Expressed in epidermal emerged from under the LRC, with levels vanishing in elongation zone. Specifically detected in the small daughter cells after the first asymmetric pericycle cell division during lateral roots emergence. Subsequently, the expression expands to the adjacent small daughter cells from the second asymmetric cell division, resulting in a central core-specific expression pattern. {ECO:0000269|PubMed:11978870, ECO:0000269|PubMed:12900442, ECO:0000269|PubMed:15549374, ECO:0000269|PubMed:18948541}. TISSUE SPECIFICITY: Expressed in seedlings, floral buds, siliques, leaves, shoot apical meristems (SAM), and, to a lower extent, in roots. {ECO:0000269|PubMed:11978870, ECO:0000269|PubMed:15549374}. locus:2081227; AT3G59420 Serine threonine-protein kinase-like protein Serine/threonine-protein kinase-like protein CR4 (EC 2.7.11.1) (Protein CRINKLY 4) (OsCR4) Q75J39 CKI4_ORYSJ CR4 LOC_Os03g43670 Os03g0637800 OSJNBa0066H15.11 OSNPB_030637800 DISRUPTION PHENOTYPE: Abnormal epidermis cells walls with discontinuous cuticles, leading to irregular architecture and organ self-fusion resulting in distorted interlocking structures of the palea and lemma which accumulates abnormal levels of anthocyanin after heading. Delayed separation of the palea and lemma at later spikelet stages. Severe interruption of pistil pollination and damage to the development of embryo and endosperm, with defects in aleurone and reduced seed fertility (PubMed:22332708). Reduced stature due to shorter primary and lateral tillers (PubMed:22899082). {ECO:0000269|PubMed:22332708, ECO:0000269|PubMed:22899082}. FUNCTION: Receptor protein kinase (PubMed:22899082). Could play a role in a differentiation signal (By similarity). Controls formative cell division in meristems (By similarity). Regulates epidermal cell differentiation in many organs (PubMed:22332708, PubMed:22899082). During floral organogenesis, required to maintain the interlocking of the palea and lemma, and fertility (PubMed:22332708). Triggers culm elongation (PubMed:22899082). {ECO:0000250|UniProtKB:O24585, ECO:0000250|UniProtKB:Q9LX29, ECO:0000269|PubMed:22332708, ECO:0000269|PubMed:22899082}. ENOG411DSK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q655N7,Q655N8 Q655N7_ORYSJ,Q655N8_ORYSJ P0003H08.14-2 Os06g0679500 OSNPB_060679500,P0003H08.14-1 Os06g0679500 OsJ_22370 OSNPB_060679500 ENOG411DSK4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 714B2 (EC 1.14.-.-) (GA 13-oxidase 2) (Gibberellin 13 oxidase 2),Cytochrome P450 714B1 (EC 1.14.-.-) (GA 13-oxidase 1) (Gibberellin 13 oxidase 1) Q0DS59,Q7XHW5 C14B2_ORYSJ,C14B1_ORYSJ CYP714B2 Os03g0332100 LOC_Os03g21400 LOC_Os03g21419 OsJ_10714 OsJ_10715,CYP714B1 Os07g0681300 LOC_Os07g48330 OsJ_25604 OSJNBa0008J01.23 DISRUPTION PHENOTYPE: No visible phenotype and no change in the levels of 13-OH GAs; due to the redundancy with CYP714B1. Cyp714b1 and cyp714b2 double mutants have decreased levels of 13-OH GAs, increased levels of 13-H GAs, including GA4, and longer uppermost internode. {ECO:0000269|PubMed:23319637}.,DISRUPTION PHENOTYPE: No visible phenotype and no change in the levels of 13-OH GAs; due to the redundancy with CYP714B2. Cyp714b1 and cyp714b2 double mutants have decreased levels of 13-OH GAs, increased levels of 13-H GAs, including GA4, and longer uppermost internode. {ECO:0000269|PubMed:23319637}. FUNCTION: Catalyzes the 13-hydroxylation of gibberellins (GAs). Determines the ratio of GA4 and GA1. Converts GA12 into GA53. {ECO:0000269|PubMed:23319637}. MISCELLANEOUS: Overexpression of CYP714B2 in a heterologous system causes semi-dwarfism and increased 13-OH GAs content. {ECO:0000305|PubMed:23319637}.,MISCELLANEOUS: Overexpression of CYP714B1 in a heterologous system causes semi-dwarfism and increased 13-OH GAs content. {ECO:0000305|PubMed:23319637}. ENOG411DSK3 RPL4D,RPL4A P49691,Q9SF40,Q2V3X4,F4KDU5 RL4B_ARATH,RL4A_ARATH,Q2V3X4_ARATH,F4KDU5_ARATH 60S ribosomal protein L4-2 (L1),60S ribosomal protein L4-1 (L1),Ribosomal protein L4/L1 family Narrow, pointed first true leaves; Dwarf; Short roots; Late flowering-N. Raikhel-2010 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 44722,44702,44573,44593 60S ribosomal protein L4-2 (L1),60S ribosomal protein L4-1 (L1),Ribosomal protein L4/L1 family chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; response to cytokinin [GO:0009735]; ribosome assembly [GO:0042255],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2151296;,locus:2074904; AT5G02870,AT3G09630 60S ribosomal protein Os03g0796501 protein (Putative 60S ribosomal protein L1),Os07g0180900 protein (Putative 60S ribosomal protein L4/L1) (cDNA clone:001-031-B02, full insert sequence) (cDNA clone:006-202-A09, full insert sequence) (cDNA clone:006-211-B12, full insert sequence) (cDNA clone:006-302-F06, full insert sequence) (cDNA clone:006-310-C02, full insert sequence) Q7Y1I5,Q6ZLB8 Q7Y1I5_ORYSJ,Q6ZLB8_ORYSJ OSJNBa0094F01.24 OSJNBb0021G19.4 Os03g0796501 OsJ_12950 OSNPB_030796501,Os07g0180900 OJ1014_E09.28 OsJ_23326 OSNPB_070180900 ENOG411DSKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TWIN SISTER of Os12g0232300 protein B9GCH5 B9GCH5_ORYSJ Os12g0232300 OsJ_35650 OSNPB_120232300 ENOG411DSKW RD22 Q08298 RD22_ARATH BURP domain protein RD22 (Dehydration-responsive protein RD22) DISRUPTION PHENOTYPE: Enhanced drought tolerance. {ECO:0000269|PubMed:25333723}. FUNCTION: Acts to suppress chlorophyll degradation under moisture stress. {ECO:0000269|PubMed:25333723}. 42260 BURP domain protein RD22 (Dehydration-responsive protein RD22) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Expressed during the early and middle stages of seed development (PubMed:8479424). Abundant throughout plant development in the aerial part of the plant (PubMed:25333723). {ECO:0000269|PubMed:8479424, ECO:0000305|PubMed:25333723}. TISSUE SPECIFICITY: Expressed in seed (PubMed:8479424). Highest expression in leaves and guard cells (PubMed:25333723). {ECO:0000269|PubMed:8479424, ECO:0000305|PubMed:25333723}. locus:2179424; AT5G25610 BURP domain-containing protein BURP domain-containing protein 3 (OsBURP03),BURP domain-containing protein 5 (OsBURP05),BURP domain-containing protein 17 (OsBURP17),Os04g0225700 protein Q942D4,Q0JEP3,B9G9L9,A0A0P0W7L7 BURP3_ORYSJ,BURP5_ORYSJ,BURPH_ORYSJ,A0A0P0W7L7_ORYSJ BURP3 Os01g0733500 LOC_Os01g53240 B1060H01.8 OsJ_03360 OSJNBb0036G09.19,BURP5 Os04g0225700 LOC_Os04g14990 OsJ_13897 OSJNBa0036B17.11,BURP17 RDB1 Os11g0170900 LOC_Os11g06980 OsJ_33118,Os04g0225700 OSNPB_040225700 ENOG411DSKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBP domain Squamosa promoter-binding-like protein 14,Squamosa promoter-binding-like protein 17,Os09g0491532 protein Q7EXZ2,A3C057,B9G4A6 SPL14_ORYSJ,SPL17_ORYSJ,B9G4A6_ORYSJ SPL14 Os08g0509600 LOC_Os08g39890 B1168A08.33 OSJNBa0016N23.108,SPL17 Os09g0491532 LOC_Os09g31438 OsJ_028679,Os09g0491532 Os09g0491532 OsJ_29839 OSNPB_090491532 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411DSKS Q84MA9,Q940B9 Y1063_ARATH,Q940B9_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630,Leucine-rich repeat protein kinase family protein (Putative receptor-kinase isolog) (Receptor-kinase isolog) 72374,72738 Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630,Leucine-rich repeat protein kinase family protein (Putative receptor-kinase isolog) (Receptor-kinase isolog) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2036499;,locus:2196464; AT1G60630,AT1G10850 inactive leucine-rich repeat receptor-like serine threonine-protein kinase Os02g0830700 protein (Receptor kinase-like) Q6K9S6 Q6K9S6_ORYSJ Os02g0830700 Os02g0830700 OJ1124_D06.24 OSNPB_020830700 ENOG411DSKP SPX1,SPX2 Q8LBH4,O48781 SPX1_ARATH,SPX2_ARATH SPX domain-containing protein 1 (Protein SPX DOMAIN GENE 1) (AtSPX1),SPX domain-containing protein 2 (Protein SPX DOMAIN GENE 2) (AtSPX2) DISRUPTION PHENOTYPE: No effect on Pi accumulation, due to the redundancy with SPX2. Spx1 and spx2 double mutants have an increased root-to-shoot growth ratio and a reduced rot hair size when grown in Pi-sufficient conditions. {ECO:0000269|PubMed:25271326}.,DISRUPTION PHENOTYPE: No effect on Pi accumulation, due to the redundancy with SPX1. Spx1 and spx2 double mutants have an increased root-to-shoot growth ratio and a reduced rot hair size when grown in Pi-sufficient conditions. {ECO:0000269|PubMed:25271326}. FUNCTION: Plays a positive role in plant adaptation to phosphate starvation (PubMed:18315545). Inhibits PHR1 DNA-binding activity in a Pi-dependent manner (PubMed:25271326). {ECO:0000269|PubMed:18315545, ECO:0000269|PubMed:25271326}.,FUNCTION: May inhibit PHR1 DNA-binding activity in a Pi-dependent manner. {ECO:0000305|PubMed:25271326}. 30073,32989 SPX domain-containing protein 1 (Protein SPX DOMAIN GENE 1) (AtSPX1),SPX domain-containing protein 2 (Protein SPX DOMAIN GENE 2) (AtSPX2) endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; cellular response to phosphate starvation [GO:0016036]; positive regulation of cellular response to phosphate starvation [GO:0080040],endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; cellular response to phosphate starvation [GO:0016036] locus:2149254;,locus:2043844; AT5G20150,AT2G26660 SPX domain-containing protein NA NA NA NA NA NA NA ENOG411DSKI PRMT13,PRMT14 Q84W92,A3KPF2 ANM13_ARATH,ANM14_ARATH Probable histone-arginine methyltransferase 1.3 (AtPRMT13) (EC 2.1.1.319) (Coactivator-associated methyltransferase 1A) (Protein arginine N-methyltransferase 4B) (AtPRMT4B),Probable histone-arginine methyltransferase 1.4 (AtPRMT14) (EC 2.1.1.319) (Coactivator-associated methyltransferase 1B) (Protein arginine N-methyltransferase 4A) (AtPRMT4A) DISRUPTION PHENOTYPE: Increased sensitivity to paraquat-triggered oxidative stress. Slower root elongation after cadmium ion CdCl(2) treatment. Decreased histone H3 methylation (H3R17me2a) leading to reduced levels of APX1 and GPX1. {ECO:0000269|PubMed:27676073}. atprmt4b-1 mutants do not have any obvious phenotypic defects when compared to wild-type plants. But the double mutants atprmt4a-1 atprmt4b-1 and atprmt4a-2 atprmt4b-1 have delayed flowering under long days.,These double mutants have delayed flowering compared to wild type plants when grown under long day conditions. Analysis of growth under short day conditions indicates that these mutants are not disrupted in the photoperiod pathway. These double mutants also seem to be able to respond to vernalization signals and to gibberellin. But they have an impaired autonomous pathway to flowering. FLC transcripts are up-regulated in these double mutants through an unknown mechanism. The global level of asymmetric dimethylation of arginine 17 in histone 3 (H3)is reduced in these mutants. The transcript levels for several repressors of FLC do not seem to be altered in the double mutants nor are there discernible changes in several types of H3 modifications at the FLC locus.,atprmt4a-2 mutants do not have any obvious phenotypic defects when compared to wild-type plants But the double mutants atprmt4a-2 atprmt4b-1 and atprmt4a-2 atprmt4b-2 have delayed flowering under long days.,atprmt4a-1 mutants do not have any obvious phenotypic defects when compared to wild-type plants But the double mutants atprmt4a-1 atprmt4b-1 and atprmt4a-1 atprmt4b-2 have delayed flowering under long days. FUNCTION: Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability (By similarity). Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling (PubMed:27676073). Positive regulator in the oxidative stress tolerance that promotes the expression of enzymes preventing oxidative stress such as APX1 and GPX1 by histone methylation (H3R17me2a). Confers tolerance to cadmium CdCl(2) and salt NaCl stresses (PubMed:27676073). {ECO:0000250|UniProtKB:Q9WVG6, ECO:0000269|PubMed:27676073}.,FUNCTION: Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability. Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling. {ECO:0000250}. R-ATH-3214858; 2.1.1.319 59915,58857 Probable histone-arginine methyltransferase 1.3 (AtPRMT13) (EC 2.1.1.319) (Coactivator-associated methyltransferase 1A) (Protein arginine N-methyltransferase 4B) (AtPRMT4B),Probable histone-arginine methyltransferase 1.4 (AtPRMT14) (EC 2.1.1.319) (Coactivator-associated methyltransferase 1B) (Protein arginine N-methyltransferase 4A) (AtPRMT4A) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; [myelin basic protein]-arginine N-methyltransferase activity [GO:0016277]; histone-arginine N-methyltransferase activity [GO:0008469]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; protein-arginine omega-N monomethyltransferase activity [GO:0035241]; histone H3-R17 methylation [GO:0034971]; histone H3-R2 methylation [GO:0034970]; histone H3-R26 methylation [GO:0034972]; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine [GO:0019919]; positive regulation of response to oxidative stress [GO:1902884]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of flower development [GO:0009909]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; [myelin basic protein]-arginine N-methyltransferase activity [GO:0016277]; histone-arginine N-methyltransferase activity [GO:0008469]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; protein-arginine omega-N monomethyltransferase activity [GO:0035241]; histone H3-R17 methylation [GO:0034971]; histone H3-R2 methylation [GO:0034970]; histone H3-R26 methylation [GO:0034972]; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine [GO:0019919]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2077567;,locus:2154339; AT3G06930,AT5G49020 Histone-arginine methyltransferase Probable histone-arginine methyltransferase CARM1 (EC 2.1.1.319) (Protein arginine N-methyltransferase 4) Q7XI75 CARM1_ORYSJ CARM1 PRMT4 Os07g0671700 LOC_Os07g47500 OsJ_25531 P0470D12.124 FUNCTION: Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability. Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling. {ECO:0000250}. ENOG411DYVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA light-dependent short hypocotyls 1 NA NA NA NA NA NA NA ENOG411DYVM Q9SUB3,Q9SUP3 Q9SUB3_ARATH,Q9SUP3_ARATH Transcription initiation factor IIE subunit beta FUNCTION: Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. {ECO:0000256|PIRNR:PIRNR016398}. 31564,32430 Transcription initiation factor IIE subunit beta transcription factor TFIIE complex [GO:0005673]; DNA binding [GO:0003677]; translation initiation factor activity [GO:0003743]; regulation of transcription, DNA-templated [GO:0006355]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2133139;,locus:2128580; AT4G21010,AT4G20330 factor IIE subunit Transcription initiation factor IIE subunit beta Q8RU47 Q8RU47_ORYSJ OSJNBb0058B20.19 LOC_Os10g25770 Os10g0397200 OsJ_31427 OSNPB_100397200 FUNCTION: Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. {ECO:0000256|PIRNR:PIRNR016398}. ENOG411DYVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA epoxide hydrolase 2-like Os12g0636400 protein (Fragment) A0A0N7KUF3 A0A0N7KUF3_ORYSJ Os12g0636400 OSNPB_120636400 ENOG411DYVU SYP61 Q946Y7,A0A1P8APJ2,F4HY64 SYP61_ARATH,A0A1P8APJ2_ARATH,F4HY64_ARATH Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1),Syntaxin of plants 61 Wilty; Sensitive to osmotic stress-R. Bressan-2002 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. Involved in osmotic stress tolerance and in abscisic acid (ABA) regulation of stomatal responses. MISCELLANEOUS: The exact location of the SYP51/SYP61 complex is unclear, but is probably on the trans-Golgi network because of the likelihood of containing chiefly VTI12. R-ATH-6811438;R-ATH-6811440; 27722,22577,23325 Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1),Syntaxin of plants 61 integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; trans-Golgi network [GO:0005802]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; abscisic acid-activated signaling pathway [GO:0009738]; Golgi vesicle transport [GO:0048193]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; SNAP receptor activity [GO:0005484]; Golgi vesicle transport [GO:0048193]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Expressed in root, leaf, stem, flower and silique, but not in hypocotyl or young leaf. Strong expression in the vasculature and in guard cells of the leaf epidermis. locus:2032569; AT1G28490 syntaxin 6 Os01g0963300 protein (Putative syntaxin 6) (cDNA clone:J013111B15, full insert sequence),Os11g0168100 protein (SNELIPTRC, putative, expressed) (cDNA, clone: J075174A20, full insert sequence) Q5JMS0,Q2RA30 Q5JMS0_ORYSJ,Q2RA30_ORYSJ Os01g0963300 OsJ_04863 OSNPB_010963300 P0483G10.35,Os11g0168100 LOC_Os11g06740 OsJ_33101 OSNPB_110168100 ENOG411DYVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Os05g0378200 protein,Os05g0378500 protein Q6AUP1,Q688G4 Q6AUP1_ORYSJ,Q688G4_ORYSJ Os05g0378200 OSJNBa0007A06.17 OSJNBa0039A21.7 OSNPB_050378200,Os05g0378500 OJ1126_B11.2 OSJNBa0039A21.10 OSNPB_050378500 ENOG411DYV3 O64649,A0A1P8AY35 O64649_ARATH,A0A1P8AY35_ARATH Sterile alpha motif (SAM) domain-containing protein (Uncharacterized protein At2g45700),Sterile alpha motif (SAM) domain-containing protein 80965,70453 Sterile alpha motif (SAM) domain-containing protein (Uncharacterized protein At2g45700),Sterile alpha motif (SAM) domain-containing protein nuclear chromosome, telomeric region [GO:0000784]; 5'-3' exodeoxyribonuclease activity [GO:0035312]; damaged DNA binding [GO:0003684]; double-strand break repair via nonhomologous end joining [GO:0006303]; interstrand cross-link repair [GO:0036297]; protection from non-homologous end joining at telomere [GO:0031848],integral component of membrane [GO:0016021] locus:2043689; AT2G45700 DNA repair metallo-beta-lactamase Os09g0439000 protein A0A0P0XNK3 A0A0P0XNK3_ORYSJ Os09g0439000 OSNPB_090439000 ENOG411DYV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetokinase NA NA NA NA NA NA NA ENOG411DYV4 Z97341.16 Q940I4,A0A1P8B477 Q940I4_ARATH,A0A1P8B477_ARATH Uncharacterized protein Z97341.16 (YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein),YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein 25770,16709 Uncharacterized protein Z97341.16 (YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein),YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein aminoacyl-tRNA editing activity [GO:0002161]; aminoacyl-tRNA ligase activity [GO:0004812] locus:2130749; AT4G16510 Pfam:YbaK Os02g0662200 protein (YbaK/prolyl-tRNA synthetase-like) (cDNA clone:001-112-F10, full insert sequence) Q6H6L7 Q6H6L7_ORYSJ Os02g0662200 OJ1001_D02.5 OsJ_07829 OSNPB_020662200 P0516F12.23 ENOG411DYV9 SEC5B,SEC5A F4HWE6,Q8S3U9,A0A1P8AUR0 SEC5B_ARATH,SEC5A_ARATH,A0A1P8AUR0_ARATH Exocyst complex component SEC5B (AtSec5b),Exocyst complex component SEC5A (AtSec5a) (Exocyst complex component 2),Exocyst complex component SEC5 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant sec5a-1 and sec5b-1 is male gametophytic lethal due to defect in pollen germination and pollen tube growth. {ECO:0000269|PubMed:18492870}. FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall.,FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. Probable component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole. Regulates autophagosome formation and autophagy-related Golgi-independent import into the vacuole. {ECO:0000269|PubMed:23944713}. R-ATH-5620916; 122673,121902,123630 Exocyst complex component SEC5B (AtSec5b),Exocyst complex component SEC5A (AtSec5a) (Exocyst complex component 2),Exocyst complex component SEC5 cytosol [GO:0005829]; exocyst [GO:0000145]; exocyst assembly [GO:0001927]; Golgi to plasma membrane transport [GO:0006893],cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; acceptance of pollen [GO:0060321]; exocyst assembly [GO:0001927]; Golgi to plasma membrane transport [GO:0006893],exocyst [GO:0000145]; Golgi to plasma membrane transport [GO:0006893] locus:2199552;,locus:2030056; AT1G21170,AT1G76850 exocyst complex component Os04g0421900 protein (cDNA clone:J013091F17, full insert sequence) Q0JD86 Q0JD86_ORYSJ Os04g0421900 Os04g0421900 OSNPB_040421900 ENOG411DYV8 Q9ZQ71 Q9ZQ71_ARATH At2g03350 (Expressed protein) (Uncharacterized protein At2g03350) 20167 At2g03350 (Expressed protein) (Uncharacterized protein At2g03350) locus:2063824; AT2G03350 Protein of unknown function DUF538 Os03g0210500 protein (Fragment) Q0DU33 Q0DU33_ORYSJ Os03g0210500 OSNPB_030210500 ENOG411EGT4 Q9SJY3,B3H5L4 Q9SJY3_ARATH,B3H5L4_ARATH Uncharacterized protein At2g22520,Uncharacterized protein 20958,17263 Uncharacterized protein At2g22520,Uncharacterized protein locus:2041263; AT2G22520 NA NA NA NA NA NA NA NA ENOG411EGT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: N-acyl phosphatidylethanolamine phospholipase D NA NA NA NA NA NA NA ENOG411EGT6 CEP15 O22882 PCP15_ARATH Precursor of CEP15 (PCEP15) [Cleaved into: C-terminally encoded peptide 15 (CEP15)] FUNCTION: Extracellular signaling peptide that may regulate primary root growth rate and systemic nitrogen (N)-demand signaling. {ECO:0000250|UniProtKB:Q8L8Y3}. 11373 Precursor of CEP15 (PCEP15) [Cleaved into: C-terminally encoded peptide 15 (CEP15)] apoplast [GO:0048046]; hormone activity [GO:0005179]; multicellular organism development [GO:0007275]; nitrate import [GO:1902025]; regulation of root development [GO:2000280]; response to abscisic acid [GO:0009737]; response to brassinosteroid [GO:0009741]; response to salicylic acid [GO:0009751] locus:2061853; AT2G40530 at2g40530 (e NA NA NA NA NA NA NA ENOG411EGT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EGT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0335500 protein,Os12g0478600 protein A0A0P0V1X1,A0A0P0YA20 A0A0P0V1X1_ORYSJ,A0A0P0YA20_ORYSJ Os01g0335500 OSNPB_010335500,Os12g0478600 OSNPB_120478600 ENOG411EGT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGT3 SCRL4,SCRL5,SCRL8,SCRL6,SCRL7 P82623,P82624,P82627,P82625,P82626 DF245_ARATH,DF246_ARATH,DF250_ARATH,DF247_ARATH,DF249_ARATH Defensin-like protein 245 (S locus cysteine-rich-like protein 4) (Protein SCRL4) (SCR-like protein 4),Defensin-like protein 246 (S locus cysteine-rich-like protein 5) (Protein SCRL5) (SCR-like protein 5),Defensin-like protein 250 (S locus cysteine-rich-like protein 8) (Protein SCRL8) (SCR-like protein 8),Defensin-like protein 247 (S locus cysteine-rich-like protein 6) (Protein SCRL6) (SCR-like protein 6),Defensin-like protein 249 (S locus cysteine-rich-like protein 7) (Protein SCRL7) (SCR-like protein 7) 10528,11119,10183,10561,10308 Defensin-like protein 245 (S locus cysteine-rich-like protein 4) (Protein SCRL4) (SCR-like protein 4),Defensin-like protein 246 (S locus cysteine-rich-like protein 5) (Protein SCRL5) (SCR-like protein 5),Defensin-like protein 250 (S locus cysteine-rich-like protein 8) (Protein SCRL8) (SCR-like protein 8),Defensin-like protein 247 (S locus cysteine-rich-like protein 6) (Protein SCRL6) (SCR-like protein 6),Defensin-like protein 249 (S locus cysteine-rich-like protein 7) (Protein SCRL7) (SCR-like protein 7) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Flower buds and roots. {ECO:0000269|PubMed:11437247}.,TISSUE SPECIFICITY: Flower buds and stems. {ECO:0000269|PubMed:11437247}. locus:1009023130;,locus:1006230782;,locus:1009023065;,locus:505006193;,locus:1009023121; AT1G60986,AT1G60987,AT1G60983,AT1G60985,AT1G60989 Plant self-incompatibility response (SCRL) protein NA NA NA NA NA NA NA ENOG411EGT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar efflux transporter for intercellular exchange NA NA NA NA NA NA NA ENOG411EGTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EGTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EGTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0491300 protein,Os08g0474400 protein,Os08g0491500 protein,Os08g0491600 protein Q6Z8V3,Q6ZDH1,A0A0P0XHH7,A0A0P0XHI5 Q6Z8V3_ORYSJ,Q6ZDH1_ORYSJ,A0A0P0XHH7_ORYSJ,A0A0P0XHI5_ORYSJ Os08g0491300 OSNPB_080491300 P0605H02.44 P0686H11.4,Os08g0474400 Os08g0474400 OSNPB_080474400 P0451G12.13,Os08g0491500 OSNPB_080491500,Os08g0491600 OSNPB_080491600 ENOG411EGTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EGTY PEP6 Q9SIZ9 PEP6_ARATH Elicitor peptide 6 FUNCTION: Elicitor of plant defense. {ECO:0000250}. 11633 Elicitor peptide 6 innate immune response [GO:0045087] locus:2052561; AT2G22000 NA NA NA NA NA NA NA NA ENOG411EGTZ PMEI5,F1I16_90 Q9SIC6,Q9M054,B3H451,Q2V441,A0A1P8AYD6 PMEI5_ARATH,Q9M054_ARATH,B3H451_ARATH,Q2V441_ARATH,A0A1P8AYD6_ARATH Pectinesterase inhibitor 5 (Pectin methylesterase inhibitor 5) (AtPMEI5),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein F1I16_90),Plant invertase/pectin methylesterase inhibitor superfamily protein FUNCTION: Pectin methylesterase (PME) inhibitor that targets PME from seeds and modulates PME activity and pectin methylesterification during seed germination. {ECO:0000269|PubMed:23129203}. 20332,20858,18786,21268,21803 Pectinesterase inhibitor 5 (Pectin methylesterase inhibitor 5) (AtPMEI5),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein F1I16_90),Plant invertase/pectin methylesterase inhibitor superfamily protein apoplast [GO:0048046]; cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; regulation of seed germination [GO:0010029],pectinesterase inhibitor activity [GO:0046910],enzyme inhibitor activity [GO:0004857],enzyme inhibitor activity [GO:0004857]; pectinesterase inhibitor activity [GO:0046910] TISSUE SPECIFICITY: Expressed in seeds, buds, and mature flowers. {ECO:0000269|PubMed:23129203}. locus:2061275;,locus:2078996;,locus:4515102936;,locus:1009023212; AT2G31430,AT3G55680,AT2G31432,AT2G31425 PMEI NA NA NA NA NA NA NA ENOG411EGTD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411EGTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) autophagy vesicles formation mitophagy and nucleophagy. Conjugation with atg5 through an ubiquitin-like conjugating system involving also atg7 as an E1-like activating enzyme and atg10 as an E2-like conjugating enzyme is essential for its function. The atg12-atg5 conjugate functions as an E3-like enzyme which is required for lipidation of atg8 and atg8 association to the vesicle membranes NA NA NA NA NA NA NA ENOG411EGTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os05g0569600 protein,Os05g0570700 protein,Os05g0570800 protein B9FI76,A0A0P0WR27,A0A0P0WQI7 B9FI76_ORYSJ,A0A0P0WR27_ORYSJ,A0A0P0WQI7_ORYSJ Os05g0569600 OsJ_19599 OSNPB_050569600,Os05g0570700 OSNPB_050570700,Os05g0570800 OSNPB_050570800 ENOG411EGTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0136300 protein (cDNA clone:001-102-H06, full insert sequence) Q5ZC68 Q5ZC68_ORYSJ Os01g0136300 OsJ_00281 OSNPB_010136300 P0443D08.9 ENOG411EGTM Q9SYL8,A0A1P8AVS8 Y1786_ARATH,A0A1P8AVS8_ARATH Putative B3 domain-containing protein At1g78640,B3 domain protein 55276,27653 Putative B3 domain-containing protein At1g78640,B3 domain protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2203005; AT1G78640 NA NA NA NA NA NA NA NA ENOG411EGTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bowman-Birk serine protease inhibitor family Os01g0127600 protein (Putative Bowman Birk trypsin inhibitor) (cDNA clone:001-125-D07, full insert sequence) (cDNA clone:J033085I16, full insert sequence) Q9FTR9 Q9FTR9_ORYSJ Os01g0127600 Os01g0127600 OsJ_00222 OSNPB_010127600 P0409B08.21 ENOG411EGTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os12g0607950 protein,F-box domain containing protein, expressed (Os12g0607800 protein) (cDNA clone:002-115-F09, full insert sequence),Os12g0608100 protein A3CJA2,Q2QMD9,A0A0P0YCB5 A3CJA2_ORYSJ,Q2QMD9_ORYSJ,A0A0P0YCB5_ORYSJ Os12g0607950 OsJ_36812 OSNPB_120607950,Os12g0607800 LOC_Os12g41450 Os12g0607800 OSNPB_120607800,Os12g0608100 OSNPB_120608100 ENOG411EGTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0717700 protein Q0D9G3 Q0D9G3_ORYSJ Os06g0717700 Os06g0717700 OSNPB_060717700 ENOG411EGZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: WD repeatcontaining protein NA NA NA NA NA NA NA ENOG411EGZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-block binding subunit of TFIIIC NA NA NA NA NA NA NA ENOG411EJXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E908 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LSM domain NA NA NA NA NA NA NA ENOG411EJHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EJAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411EJAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain Os01g0367601 protein,Os09g0391400 protein,Os01g0336200 protein,Os05g0385900 protein,Os08g0337500 protein,Os02g0550566 protein,Os04g0195466 protein,Os05g0385950 protein,Os06g0660866 protein A0A0P0V2H4,A0A0P0XL65,A0A0P0V213,A0A0P0WLP1,A0A0P0XEG6,A0A0P0VK66,A0A0P0W7G2,A0A0P0WM10,A0A0P0X037 A0A0P0V2H4_ORYSJ,A0A0P0XL65_ORYSJ,A0A0P0V213_ORYSJ,A0A0P0WLP1_ORYSJ,A0A0P0XEG6_ORYSJ,A0A0P0VK66_ORYSJ,A0A0P0W7G2_ORYSJ,A0A0P0WM10_ORYSJ,A0A0P0X037_ORYSJ Os01g0367601 OSNPB_010367601,Os09g0391400 OSNPB_090391400,Os01g0336200 OSNPB_010336200,Os05g0385900 OSNPB_050385900,Os08g0337500 OSNPB_080337500,Os02g0550566 OSNPB_020550566,Os04g0195466 OSNPB_040195466,Os05g0385950 OSNPB_050385950,Os06g0660866 OSNPB_060660866 ENOG411EJAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJAD F4IMD2 F4IMD2_ARATH LOW protein: cytochrome C biogenesis ccmF-like protein 31425 LOW protein: cytochrome C biogenesis ccmF-like protein integral component of membrane [GO:0016021] locus:4515102812; AT2G07815 NA NA NA NA NA NA NA NA ENOG411EJAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EJAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Testis expressed 10 NA NA NA NA NA NA NA ENOG411E7IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) OSJNBa0064M23.13 protein (Os04g0580866 protein) Q7XSR3 Q7XSR3_ORYSJ Os04g0580866 OsJ_15895 OSJNBa0064M23.13 OSNPB_040580866 ENOG411EJX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EJX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S3 C-terminal domain NA NA NA NA NA NA NA ENOG411EJX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DST7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response regulator NA NA NA NA NA NA NA ENOG411DST6 Q8VZ67 Y4919_ARATH Uncharacterized zinc finger CCHC domain-containing protein At4g19190 69147 Uncharacterized zinc finger CCHC domain-containing protein At4g19190 nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2134741; AT4G19190 N-terminal domain of CBF1 interacting co-repressor CIR Os06g0708900 protein Q0D9M1 Q0D9M1_ORYSJ Os06g0708900 Os06g0708900 OSNPB_060708900 ENOG411DST5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Agenet domain NA NA NA NA NA NA NA ENOG411DST3 Q94C11,A0A1I9LRK1,B3H4X1,A0A1I9LRK2 SUGP1_ARATH,A0A1I9LRK1_ARATH,B3H4X1_ARATH,A0A1I9LRK2_ARATH SURP and G-patch domain-containing protein 1-like protein (Splicing factor 4-like protein) (SF4-like protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein R-ATH-72163; 48693,56584,45660,53551 SURP and G-patch domain-containing protein 1-like protein (Splicing factor 4-like protein) (SF4-like protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2083750; AT3G52120 SURP and G-patch domain-containing protein 1-like protein-like Os09g0281600 protein A0A0P0XKM6 A0A0P0XKM6_ORYSJ Os09g0281600 OSNPB_090281600 ENOG411DST2 T15N1_190 Q9LYJ0,A0A1P8BAV4 Q9LYJ0_ARATH,A0A1P8BAV4_ARATH Cinnamoyl CoA reductase-like protein (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamoyl CoA reductase),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT5G14700-MONOMER; 40266,31859 Cinnamoyl CoA reductase-like protein (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamoyl CoA reductase),NAD(P)-binding Rossmann-fold superfamily protein catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2222697; AT5G14700 3-beta hydroxysteroid dehydrogenase/isomerase family Cinnamoyl-CoA reductase-like SNL6 (EC 1.2.-.-) (Protein SUPPRESSOR OF NH1-MEDIATED LESION 6),Os05g0578500 protein (Putative cinnamoyl CoA reductase) Q0JKZ0,Q6L5E8 SNL6_ORYSJ,Q6L5E8_ORYSJ SNL6 Os01g0639200 LOC_Os01g45200 P0004A09.22 P0004A09.23 P0696E01.43 P0696E01.44,Os05g0578500 Os05g0578500 OJ1126_B10.14 OsJ_19661 OSJNBa0017N18.1 OSNPB_050578500 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced lignin content and increased sugar extractability. Mutant plants show enhanced susceptibility to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). {ECO:0000269|PubMed:20862311}. FUNCTION: Involved in defense response. Required for NPR1/NH1-mediated resistance to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). Required for pathogenesis-related (PR) genes expression. May be involved in lignin biosynthesis. {ECO:0000269|PubMed:20862311}. ENOG411DST1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os08g0395800 protein (cDNA clone:J023027H24, full insert sequence) Q6ZKD8 Q6ZKD8_ORYSJ Os08g0395800 Os08g0395800 OJ1123_G08.21 OSNPB_080395800 ENOG411DST0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin_Reduct NA NA NA NA NA NA NA ENOG411DSTG CYP19-1,CYP18-4,CYP18-3,CYP19-2 Q38900,Q42406,P34790,Q9SKQ0 CP19A_ARATH,CP18D_ARATH,CP18C_ARATH,CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-1 (PPIase CYP19-1) (EC 5.2.1.8) (Cyclophilin of 19 kDa 1) (Rotamase cyclophilin-3),Peptidyl-prolyl cis-trans isomerase CYP18-4 (PPIase CYP18-4) (EC 5.2.1.8) (Cyclophilin of 18 kDa 4) (Cyclophilin-1) (Rotamase cyclophilin-5),Peptidyl-prolyl cis-trans isomerase CYP18-3 (PPIase CYP18-3) (EC 5.2.1.8) (Cyclophilin of 18 kDa 3) (Cyclosporin A-binding protein) (Rotamase cyclophilin-1),Peptidyl-prolyl cis-trans isomerase CYP19-2 (PPIase CYP19-2) (EC 5.2.1.8) (Cyclophilin of 19 kDa 2) (Cyclophilin-2) (Rotamase cyclophilin-6) DISRUPTION PHENOTYPE: Increased susceptibility to P.syringae infection. {ECO:0000269|PubMed:24440291}. FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in reactive oxygen species production in response to pathogen infection. {ECO:0000269|PubMed:24440291}.,FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.,FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in de-etiolation. Reduces the sensitivity to brassinosteroids by decreasing somehow the abundance of the partially dephosphorylated form of BES1. Triggers the activation of bacterial AvrRpt2 protease activity upon infection by P.syringae. Activated AvrRpt2 confers virulence in plant lacking the RPS2 resistance gene. In plants expressing RPS2, the AvrRpt2-mediated degradation of RIN4 activates RPS2, which induces hypersensitive response (HR) and plant resistance. {ECO:0000269|PubMed:15746386, ECO:0000269|PubMed:16968222, ECO:0000269|PubMed:20050698, ECO:0000269|PubMed:22463079}. R-ATH-6798695; 5.2.1.8; 5.2.1.8 18492,18378,18373,18464 Peptidyl-prolyl cis-trans isomerase CYP19-1 (PPIase CYP19-1) (EC 5.2.1.8) (Cyclophilin of 19 kDa 1) (Rotamase cyclophilin-3),Peptidyl-prolyl cis-trans isomerase CYP18-4 (PPIase CYP18-4) (EC 5.2.1.8) (Cyclophilin of 18 kDa 4) (Cyclophilin-1) (Rotamase cyclophilin-5),Peptidyl-prolyl cis-trans isomerase CYP18-3 (PPIase CYP18-3) (EC 5.2.1.8) (Cyclophilin of 18 kDa 3) (Cyclosporin A-binding protein) (Rotamase cyclophilin-1),Peptidyl-prolyl cis-trans isomerase CYP19-2 (PPIase CYP19-2) (EC 5.2.1.8) (Cyclophilin of 19 kDa 2) (Cyclophilin-2) (Rotamase cyclophilin-6) chloroplast [GO:0009507]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; signal transduction [GO:0007165],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; signal transduction [GO:0007165],apoplast [GO:0048046]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; blue light signaling pathway [GO:0009785]; brassinosteroid mediated signaling pathway [GO:0009742]; de-etiolation [GO:0009704]; plant-type hypersensitive response [GO:0009626]; protein folding [GO:0006457]; red, far-red light phototransduction [GO:0009585]; regulation of protein phosphorylation [GO:0001932]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to light stimulus [GO:0009416]; signal transduction [GO:0007165],cytosol [GO:0005829]; plasma membrane [GO:0005886]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] DEVELOPMENTAL STAGE: Mostly expressed in young tissues. Expressed in all parts of floral buds, but later confined to stigma and anthers. {ECO:0000269|PubMed:10361676}. TISSUE SPECIFICITY: Pollen (at protein level). Ubiquitous with higher levels in stems and flowers. In seeds, present in endosperm and embryo. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:16014362, ECO:0000269|PubMed:16247729, ECO:0000269|PubMed:9426607}.,TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots and flowers. Confined to vascular tissues. Also detected in stigmas, base of siliques and anthers. {ECO:0000269|PubMed:10361676, ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:9426607}.,TISSUE SPECIFICITY: Pollen (at protein level). Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:16242667, ECO:0000269|PubMed:16247729, ECO:0000269|PubMed:8132503}.,TISSUE SPECIFICITY: Pollen (at protein level). Widely expressed in aerial organs, at high levels in young rosette leaves and flowers, at low levels in older tissues. {ECO:0000269|PubMed:10361676, ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:16242667, ECO:0000269|PubMed:16247729}. locus:2045076;,locus:2116880;,locus:2141747;,locus:2047097; AT2G16600,AT4G34870,AT4G38740,AT2G21130 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q6ZH98 Q6ZH98_ORYSJ Os02g0121300 OJ1020_C02.14 OsJ_05166 OSJNBb0088N06.23 OSNPB_020121300 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DSTF SUC4 Q9FE59 SUC4_ARATH Sucrose transport protein SUC4 (Sucrose permease 4) (Sucrose transporter 4) (Sucrose-proton symporter 4) FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. {ECO:0000269|PubMed:10948254}. PATHWAY: Glycan biosynthesis; sucrose metabolism. R-ATH-189200; 54784 Sucrose transport protein SUC4 (Sucrose permease 4) (Sucrose transporter 4) (Sucrose-proton symporter 4) cis-Golgi network [GO:0005801]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; sucrose transmembrane transporter activity [GO:0008515]; symporter activity [GO:0015293]; sucrose metabolic process [GO:0005985] DEVELOPMENTAL STAGE: Also present in inflorescence axil branches and in anther and pistil of developing flowers. At anthesis, restricted to anthers. {ECO:0000269|PubMed:10948254}. TISSUE SPECIFICITY: Expressed in sink tissues, mostly in minor veins of sink leaves. Localized in companion cells. {ECO:0000269|PubMed:10948254, ECO:0000269|PubMed:12689351}. locus:2024422; AT1G09960 sucrose transporter Sucrose transport protein SUT2 (SUC4-like protein) (Sucrose permease 2) (Sucrose transporter 2) (OsSUT2) (Sucrose-proton symporter 2),Os12g0641400 protein Q0ILJ3,C7JA46 SUT2_ORYSJ,C7JA46_ORYSJ SUT2 SUT2M Os12g0641400 LOC_Os12g44380,Os12g0641400 Os12g0641400 OSNPB_120641400 FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides (By similarity). {ECO:0000250}. ENOG411DSTD DEP1 Q9FN41,F4JYQ5,F4JYQ6,A0A1P8BB04,A0A1P8BAY5,A0A1P8BAY8 MTBC_ARATH,F4JYQ5_ARATH,F4JYQ6_ARATH,A0A1P8BB04_ARATH,A0A1P8BAY5_ARATH,A0A1P8BAY8_ARATH Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Includes: Methylthioribulose-1-phosphate dehydratase (MTRu-1-P dehydratase) (EC 4.2.1.109); Enolase-phosphatase E1 (EC 3.1.3.77) (2,3-diketo-5-methylthio-1-phosphopentane phosphatase)],Probable methylthioribulose-1-phosphate dehydratase (MTRu-1-P dehydratase) (EC 4.2.1.109),Haloacid dehalogenase-like hydrolase family protein FUNCTION: Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). {ECO:0000256|HAMAP-Rule:MF_03116, ECO:0000256|SAAS:SAAS00738389}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 2/6. {ECO:0000255|HAMAP-Rule:MF_03118}.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 3/6. {ECO:0000255|HAMAP-Rule:MF_03118}.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 4/6. {ECO:0000255|HAMAP-Rule:MF_03118}.,PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 2/6. {ECO:0000256|HAMAP-Rule:MF_03116, ECO:0000256|SAAS:SAAS00630506}.,PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 2/6. {ECO:0000256|HAMAP-Rule:MF_03118, ECO:0000256|SAAS:SAAS00630506}.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 3/6. {ECO:0000256|HAMAP-Rule:MF_03118}.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 4/6. {ECO:0000256|HAMAP-Rule:MF_03118}. ARA:AT5G53850-MONOMER; R-ATH-1237112; 4.2.1.109; 3.1.3.77,4.2.1.109 56521,45023,46963,47267,58461,48243 Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Includes: Methylthioribulose-1-phosphate dehydratase (MTRu-1-P dehydratase) (EC 4.2.1.109); Enolase-phosphatase E1 (EC 3.1.3.77) (2,3-diketo-5-methylthio-1-phosphopentane phosphatase)],Probable methylthioribulose-1-phosphate dehydratase (MTRu-1-P dehydratase) (EC 4.2.1.109),Haloacid dehalogenase-like hydrolase family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; acireductone synthase activity [GO:0043874]; magnesium ion binding [GO:0000287]; methylthioribulose 1-phosphate dehydratase activity [GO:0046570]; L-methionine salvage from methylthioadenosine [GO:0019509],cytoplasm [GO:0005737]; hydrolase activity [GO:0016787]; methylthioribulose 1-phosphate dehydratase activity [GO:0046570]; zinc ion binding [GO:0008270]; L-methionine salvage from methylthioadenosine [GO:0019509]; L-methionine salvage from S-adenosylmethionine [GO:0019284],cytoplasm [GO:0005737]; acireductone synthase activity [GO:0043874]; magnesium ion binding [GO:0000287]; L-methionine salvage from methylthioadenosine [GO:0019509],cytoplasm [GO:0005737]; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity [GO:0043715]; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity [GO:0043716]; acireductone synthase activity [GO:0043874]; magnesium ion binding [GO:0000287]; methylthioribulose 1-phosphate dehydratase activity [GO:0046570]; zinc ion binding [GO:0008270]; L-methionine salvage from methylthioadenosine [GO:0019509]; L-methionine salvage from S-adenosylmethionine [GO:0019284] locus:2154664; AT5G53850 bifunctional methylthioribulose-1-phosphate dehydratase enolase-phosphatase Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Includes: Methylthioribulose-1-phosphate dehydratase (MTRu-1-P dehydratase) (EC 4.2.1.109); Enolase-phosphatase E1 (EC 3.1.3.77) (2,3-diketo-5-methylthio-1-phosphopentane phosphatase)],Os01g0101200 protein (Fragment),Os01g0101200 protein (cDNA clone:001-038-F07, full insert sequence) (cDNA clone:006-303-C10, full insert sequence) (cDNA clone:006-310-A09, full insert sequence) Q2R483,Q0JRH3,B7EWK0 MTBC_ORYSJ,Q0JRH3_ORYSJ,B7EWK0_ORYSJ Os11g0484000 LOC_Os11g29370 OsJ_33906,Os01g0101200 Os01g0101200 OSNPB_010101200,Os01g0101200 OsJ_00011 OSNPB_010101200 ENOG411DSTC OM64,OEP64,TOC64-III F4KCL7,Q9LVH5,A0A1I9LL70 OE64M_ARATH,OE64C_ARATH,A0A1I9LL70_ARATH Outer envelope protein 64, mitochondrial (Mitochondrial outer membrane protein 64) (mtOM64) (Translocon at the outer membrane of chloroplasts 64-V) (AtTOC64-V),Outer envelope protein 64, chloroplastic (Translocon at the outer membrane of chloroplasts 64-III),Translocon at the outer membrane of chloroplasts 64-III DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17655652}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16619024, ECO:0000269|PubMed:17655652}. No visible phenotype.,No differences in expression intensity relative to wild type could be detected. FUNCTION: Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria. {ECO:0000250}.,FUNCTION: Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids. {ECO:0000269|PubMed:16619024, ECO:0000269|PubMed:17306301, ECO:0000269|PubMed:17655652}. ARA:AT3G17970-MONOMER; 65912,64025,60722 Outer envelope protein 64, mitochondrial (Mitochondrial outer membrane protein 64) (mtOM64) (Translocon at the outer membrane of chloroplasts 64-V) (AtTOC64-V),Outer envelope protein 64, chloroplastic (Translocon at the outer membrane of chloroplasts 64-III),Translocon at the outer membrane of chloroplasts 64-III integral component of membrane [GO:0016021]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; amidase activity [GO:0004040]; protein targeting to mitochondrion [GO:0006626],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of chloroplast outer membrane [GO:0031359]; plastid [GO:0009536]; amidase activity [GO:0004040]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; amidase activity [GO:0004040] TISSUE SPECIFICITY: Expressed in roots and flower buds. Detected in leaves. {ECO:0000269|PubMed:14741350, ECO:0000269|PubMed:17655652}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves and flower buds. {ECO:0000269|PubMed:14741350, ECO:0000269|PubMed:17655652}. locus:2184757;,locus:2088600; AT5G09420,AT3G17970 Translocon at the outer membrane of chloroplasts Chloroplast outer membrane translocon subunit, putative, expressed (Chloroplast protein-translocon-like protein) (Os03g0707900 protein),Os02g0754500 protein (Putative Toc64) (cDNA clone:J023039E12, full insert sequence) Q10E52,Q6Z697 Q10E52_ORYSJ,Q6Z697_ORYSJ LOC_Os03g50010 Os03g0707900 OSJNBb0022E02.6 OSNPB_030707900,Os02g0754500 Os02g0754500 OsJ_08425 OSNPB_020754500 P0627E03.16 ENOG411DSTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 Os04g0692400 protein B9FDS3 B9FDS3_ORYSJ Os04g0692400 OsJ_16751 OSNPB_040692400 ENOG411DSTA HOS3,F9E10.15,HOS3-1 Q9SYY4,Q9S804,A0A1P8B6V8 ELO3L_ARATH,Q9S804_ARATH,A0A1P8B6V8_ARATH Elongation of fatty acids protein 3-like (Protein ELO3-like) (EC 2.3.1.-) (Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 3) (Very long-chain fatty acid condensing enzyme HOS3) (VLCFA condensing enzyme HOS3),F25A4.4 (GNS1/SUR4 membrane protein family) (Uncharacterized protein F9E10.15),GNS1/SUR4 membrane protein family DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show decreased abscisic acid (ABA)-induced inhibition of root growth and seed dormancy, and enhanced ABA-mediated stomatal closure. {ECO:0000269|PubMed:19529829}. Sensitive to ABA and salt-X. Li-2009 FUNCTION: Probable very long-chain fatty acid (VLCFA) elongase that controls VLCFA composition and functions to inhibit abscisic acid (ABA)-mediated stress responses, including regulation of stomatal aperture, maintenance of primary root growth and inhibition of germination. VLCFA pathway and products may function as signaling components acting upstream of sphingosine-1-phosphate, ceramide and the heterotrimeric G-protein complex, in lipid-mediated regulation of abiotic stress signaling. {ECO:0000269|PubMed:19529829}. R-ATH-2046105;R-ATH-2046106;R-ATH-75876; 2.3.1.- 32782,32128,34716 Elongation of fatty acids protein 3-like (Protein ELO3-like) (EC 2.3.1.-) (Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 3) (Very long-chain fatty acid condensing enzyme HOS3) (VLCFA condensing enzyme HOS3),F25A4.4 (GNS1/SUR4 membrane protein family) (Uncharacterized protein F9E10.15),GNS1/SUR4 membrane protein family integral component of endoplasmic reticulum membrane [GO:0030176]; fatty acid elongase activity [GO:0009922]; cellular response to abscisic acid stimulus [GO:0071215]; fatty acid elongation [GO:0030497]; fatty acid elongation, monounsaturated fatty acid [GO:0034625]; fatty acid elongation, polyunsaturated fatty acid [GO:0034626]; fatty acid elongation, saturated fatty acid [GO:0019367]; sphingolipid biosynthetic process [GO:0030148]; very long-chain fatty acid biosynthetic process [GO:0042761],integral component of endoplasmic reticulum membrane [GO:0030176]; fatty acid elongase activity [GO:0009922]; fatty acid elongation, monounsaturated fatty acid [GO:0034625]; fatty acid elongation, polyunsaturated fatty acid [GO:0034626]; fatty acid elongation, saturated fatty acid [GO:0019367]; sphingolipid biosynthetic process [GO:0030148]; very long-chain fatty acid biosynthetic process [GO:0042761],integral component of membrane [GO:0016021] locus:2115395;,locus:2027207; AT4G36830,AT1G75000 GNS1 SUR4 membrane family protein GNS1/SUR4 membrane family protein, putative, expressed (Os12g0635700 protein) (cDNA clone:002-139-G12, full insert sequence) Q2QLN2 Q2QLN2_ORYSJ LOC_Os12g43890 Os12g0635700 OsJ_36991 OSNPB_120635700 ENOG411DSTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like NA NA NA NA NA NA NA ENOG411DSTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved region of Rad21 / Rec8 like protein OJ991113_30.15 protein (Os04g0488100 protein) (Rad21-2 protein) (cDNA clone:J033043K15, full insert sequence) Q7XUF3 Q7XUF3_ORYSJ OJ991113_30.15 Os04g0488100 OSNPB_040488100 ENOG411DSTK F9D16.290 Q9SUP5 Q9SUP5_ARATH Pectin lyase-like superfamily protein (Putative polygalacturonase) ARA:AT4G23820-MONOMER; 48635 Pectin lyase-like superfamily protein (Putative polygalacturonase) extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2128524; AT4G23820 Polygalacturonase Os05g0587000 protein,Os02g0256100 protein (Putative polygalacturonase) (cDNA clone:001-030-D10, full insert sequence) (cDNA clone:006-208-D06, full insert sequence),Os01g0618900 protein (Polygalacturonase-like),Os01g0618900 protein (Fragment) Q0DFJ3,Q6EN36,Q5ZBG3,A0A0P0V5A9 Q0DFJ3_ORYSJ,Q6EN36_ORYSJ,Q5ZBG3_ORYSJ,A0A0P0V5A9_ORYSJ Os05g0587000 Os05g0587000 OsJ_00232 OSNPB_050587000,Os02g0256100 OsJ_06128 OSJNBa0052K15.27 OSNPB_020256100 P0613F08.9,B1040D09.13-2 Os01g0618900 OSNPB_010618900,Os01g0618900 OSNPB_010618900 ENOG411DSTJ Q8RWI0 Q8RWI0_ARATH Myelin-associated oligodendrocyte basic protein (Uncharacterized protein At1g54520) 42844 Myelin-associated oligodendrocyte basic protein (Uncharacterized protein At1g54520) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2020158; AT1G54520 Protein of unknown function (DUF1517) Expressed protein (Os03g0695500 protein) Q851E0 Q851E0_ORYSJ Os03g0695500 LOC_Os03g48920 Os03g0695500 OSJNBb0021P10.2 OSNPB_030695500 ENOG411DSTI MJC20.15 Q8RXN8 Q8RXN8_ARATH DCD (Development and Cell Death) domain protein (Uncharacterized protein At5g42050) 39784 DCD (Development and Cell Death) domain protein (Uncharacterized protein At5g42050) locus:2165765; AT5G42050 DCD Os05g0594100 protein (cDNA clone:001-207-F10, full insert sequence) (cDNA clone:006-308-G03, full insert sequence),Os01g0550300 protein (Putative GDA2 protein) (cDNA clone:001-207-H09, full insert sequence) (cDNA clone:J013108E24, full insert sequence),Os01g0550300 protein (Putative GDA2 protein) Q5TKG4,Q5JK83,Q5JK82 Q5TKG4_ORYSJ,Q5JK83_ORYSJ,Q5JK82_ORYSJ Os05g0594100 OSJNBa0030I14.2 OSNPB_050594100,B1156H12.27-1 Os01g0550300 OsJ_02182 OSJNBa0024F24.12-1 OSNPB_010550300,B1156H12.27-2 Os01g0550300 OSJNBa0024F24.12-2 OSNPB_010550300 ENOG411DSTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA domain (Cdc48 subfamily) NA NA NA NA NA NA NA ENOG411DSTU ALIS1,ALIS3 Q9LTW0,Q9SLK2 ALIS1_ARATH,ALIS3_ARATH ALA-interacting subunit 1 (AtALIS1) (ALA3 beta-subunit 1),ALA-interacting subunit 3 (AtALIS3) FUNCTION: Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex. {ECO:0000269|PubMed:18344284, ECO:0000269|PubMed:20053675}.,FUNCTION: Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex. {ECO:0000250, ECO:0000269|PubMed:20053675}. R-ATH-6798695; 39069,38955 ALA-interacting subunit 1 (AtALIS1) (ALA3 beta-subunit 1),ALA-interacting subunit 3 (AtALIS3) endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; phospholipid transport [GO:0015914],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Found in petals and sepals, but not in reproductive tissues. In siliques, detected in the upper part of the seed pod and in the area between the seed pod and the stem, but not in developing seeds. Strong expression in vascular shoot tissues and in stomatal guard cells of young rosettes leaves. In roots, expressed in cells surrounding the xylem and in central and peripheral columella cells. {ECO:0000269|PubMed:18344284}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18344284}. locus:2087695;,locus:2020018; AT3G12740,AT1G54320 ALA-Interacting Subunit ALA-interacting subunit Q6H511,Q655Y4,Q10SJ9,A0A0P0WPU4 Q6H511_ORYSJ,Q655Y4_ORYSJ,Q10SJ9_ORYSJ,A0A0P0WPU4_ORYSJ Os02g0173800 Os02g0173800 OSJNBa0073A21.17 OSNPB_020173800,Os06g0665000 OSNPB_060665000 P0473H04.13,Os03g0120100 LOC_Os03g02830 Os03g0120100 OSNPB_030120100,Os05g0529900 OSNPB_050529900 ENOG411DSTT Q1PEH3 Q1PEH3_ARATH Cytidine/deoxycytidylate deaminase family protein ARA:AT3G48540-MONOMER; R-ATH-499943; 25859 Cytidine/deoxycytidylate deaminase family protein hydrolase activity [GO:0016787]; zinc ion binding [GO:0008270] locus:2114490; AT3G48540 deoxycytidylate deaminase Deoxycytidylate deaminase-like (Os01g0765000 protein) (cDNA clone:J033071E06, full insert sequence),Os01g0765000 protein (Fragment) Q5JN09,A0A0N7KDT3 Q5JN09_ORYSJ,A0A0N7KDT3_ORYSJ P0403C05.22-1 Os01g0765000 OSNPB_010765000,Os01g0765000 OSNPB_010765000 ENOG411DSTS Q9MA56,A0A1I9LQQ5,F4K4D6 Q9MA56_ARATH,A0A1I9LQQ5_ARATH,F4K4D6_ARATH F22F7.12 protein (Tudor/PWWP/MBT superfamily protein) (Uncharacterized protein At3g05430),Tudor/PWWP/MBT superfamily protein 107901,106990,118096 F22F7.12 protein (Tudor/PWWP/MBT superfamily protein) (Uncharacterized protein At3g05430),Tudor/PWWP/MBT superfamily protein locus:2079767;,locus:2143631; AT3G05430,AT5G27650 PWWP domain-containing protein Os05g0149200 protein A0A0P0WI45 A0A0P0WI45_ORYSJ Os05g0149200 OSNPB_050149200 ENOG411DSTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mur ligase family catalytic domain NA NA NA NA NA NA NA ENOG411DSTQ MLO13 Q94KB2,A0A1P8B5M1 MLO13_ARATH,A0A1P8B5M1_ARATH MLO-like protein 13 (AtMlo13) (AtMlo20),MLO-like protein FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}.,FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. 55068,46636 MLO-like protein 13 (AtMlo13) (AtMlo20),MLO-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607],integral component of membrane [GO:0016021]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2135982; AT4G24250 May be involved in modulation of pathogen defense and leaf cell death (By similarity) Os02g0197200 protein (Putative seven transmembrane protein Mlo7),Os06g0610500 protein Q6H7L8,A0A0P0WYT9 Q6H7L8_ORYSJ,A0A0P0WYT9_ORYSJ Os02g0197200 Os02g0197200 OJ1524_D08.24 OSNPB_020197200,Os06g0610500 OSNPB_060610500 ENOG411DSTP NSN1 Q9M8Z5 NSN1_ARATH Guanine nucleotide-binding protein-like NSN1 (Nucleolar GTP-binding protein NSN1) (DAR GTPase 4) (Protein nucleostemin-like 1) DISRUPTION PHENOTYPE: Dwarf with severe defects in reproduction, eventual arrest in embryo development that can occur at any stage of embryogenesis, distorted cotyledons, and upward curled leaves probably due to disoriented leaf polarity. Ectopic meristem-like outgrowths on the surface of cotyledons and leaves (PubMed:22058024). Abnormal expression of meristem-related genes and of leaf polarity-related genes (PubMed:22357616, PubMed:22058024). Heterozygote plants develop defective flowers and siliques on inflorescences sometimes terminated by the formation of carpelloid flower, and thus leading to a highly reduced self-fertility (PubMed:22357616). {ECO:0000269|PubMed:22058024, ECO:0000269|PubMed:22357616}. FUNCTION: Involved in the differentiation of epidermal cells, probably via the regulation of the expression of meristem-related genes (e.g. CLV3, STM, KNAT1, CUC2 and AG) and of leaf polarity-related genes (e.g. YAB5, FIL, AS2, PHB and PHV) (PubMed:22058024, PubMed:22357616). May play a role in regulating cellular proliferation (By similarity). Necessary for flower development, probably by preventing apical dominance through the down-regulation of AG expression (PubMed:22357616). Required for embryogenesis, leaf and cotyledon development, as well as for leaf polarity establishment (PubMed:22058024). Plays an important role in plant growth and senescence by modulating ribosome biogenesis in nucleolus. Possesses GTPAse activity in vitro. Possesses RNA binding activity in vitro. Associates with ribosomes (PubMed:26163696). {ECO:0000250|UniProtKB:Q8MT06, ECO:0000269|PubMed:22058024, ECO:0000269|PubMed:22357616, ECO:0000269|PubMed:26163696}. R-ATH-6791226; 65786 Guanine nucleotide-binding protein-like NSN1 (Nucleolar GTP-binding protein NSN1) (DAR GTPase 4) (Protein nucleostemin-like 1) nucleolus [GO:0005730]; plasmodesma [GO:0009506]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cotyledon development [GO:0048825]; floral organ morphogenesis [GO:0048444]; maintenance of inflorescence meristem identity [GO:0010077]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of embryonic development [GO:0045995]; regulation of epidermal cell differentiation [GO:0045604]; regulation of leaf development [GO:2000024]; ribosome biogenesis [GO:0042254] DEVELOPMENTAL STAGE: Accumulates in developing embryos and in the primordia of cotyledons and leaves (PubMed:22058024). Accumulates mostly in the inflorescence meristem and in floral primordia. Low levels in the inflorescence meristem dome, but high levels in the floral primordia already in early stages. Accumulates progressively in floral organ primordia to become concentrated in the primordia of stamens and carpels. At the later stages of floral development, expressed primarily in developing microspores in the stamens and ovules in the carpels (PubMed:22357616). {ECO:0000269|PubMed:22058024, ECO:0000269|PubMed:22357616}. TISSUE SPECIFICITY: Mostly expressed in flowers, siliques and inflorescence apex, and, to a lower extent, in stems and leaves. {ECO:0000269|PubMed:22357616}. locus:2077587; AT3G07050 Guanine nucleotide-binding protein-like 3 Os01g0375000 protein (Putative nucleostemin) Q5ZCV4 Q5ZCV4_ORYSJ Os01g0375000 Os01g0375000 B1045D11.37 B1111C09.2 OsJ_01830 OSNPB_010375000 ENOG411DSTZ RPL3B Q9LRN8 RK3B_ARATH 50S ribosomal protein L3-2, chloroplastic FUNCTION: One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. {ECO:0000250}. 35404 50S ribosomal protein L3-2, chloroplastic chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2093586; AT3G17465 ribosomal protein Os01g0251100 protein (Putative ribosomal protein L3) (cDNA clone:J033064P19, full insert sequence) (cDNA clone:J033070D07, full insert sequence) Q9LIT4 Q9LIT4_ORYSJ Os01g0251100 OsJ_01115 OSNPB_010251100 P0434D08.21 ENOG411DSTY FAP2 Q84RK2,A0A1P8B1G4 FAP2_ARATH,A0A1P8B1G4_ARATH Fatty-acid-binding protein 2 (AtFAP2) (Chalcone-flavanone isomerase family protein 2),Chalcone-flavanone isomerase family protein DISRUPTION PHENOTYPE: No visible phenotype during vegetative growth. {ECO:0000269|PubMed:22622584}. FUNCTION: Fatty-acid-binding protein. Associates with saturated fatty acid. 44809,39918 Fatty-acid-binding protein 2 (AtFAP2) (Chalcone-flavanone isomerase family protein 2),Chalcone-flavanone isomerase family protein chloroplast stroma [GO:0009570]; chalcone isomerase activity [GO:0045430]; fatty acid binding [GO:0005504]; fatty acid metabolic process [GO:0006631]; flavonoid biosynthetic process [GO:0009813],chalcone isomerase activity [GO:0045430]; flavonoid biosynthetic process [GO:0009813] TISSUE SPECIFICITY: Expressed in developing cotyledons, young seedlings, roots, seeds, embryos, macrospores, preanthesis and tapetum. Restricted to developing and reproductive tissues. {ECO:0000269|PubMed:22622584}. locus:2057751; AT2G26310 Chalcone-flavanone isomerase Os02g0778500 protein (cDNA clone:002-125-B08, full insert sequence),Os06g0203600 protein (cDNA clone:J023143N19, full insert sequence) Q6K7H0,Q69SP9 Q6K7H0_ORYSJ,Q69SP9_ORYSJ Os02g0778500 Os02g0778500 OJ1293_A01.5 OSNPB_020778500,Os06g0203600 Os06g0203600 OSJNBa0016O19.34 OSNPB_060203600 ENOG411DSTX EMB2731 Q9FG71,A8MQZ2,A0A1P8BFG8,Q3E8D1,F4KDB4 EMC89_ARATH,A8MQZ2_ARATH,A0A1P8BFG8_ARATH,Q3E8D1_ARATH,F4KDB4_ARATH ER membrane protein complex subunit 8/9 homolog (Protein EMBRYO DEFECTIVE 2731),AT5G51620 protein (Uncharacterized protein family (UPF0172)),Uncharacterized protein family (UPF0172) Embryo defective; Gametophyte defective (inferred)-D. Meinke-2003 22979,5848,18643,13952,9234 ER membrane protein complex subunit 8/9 homolog (Protein EMBRYO DEFECTIVE 2731),AT5G51620 protein (Uncharacterized protein family (UPF0172)),Uncharacterized protein family (UPF0172) endoplasmic reticulum [GO:0005783]; ER membrane protein complex [GO:0072546],ER membrane protein complex [GO:0072546] locus:2178403;,locus:2153062; AT5G55940,AT5G51620 Uncharacterised protein family (UPF0172) OSJNBb0067G11.11 protein (Os04g0270200 protein) (cDNA clone:001-040-F11, full insert sequence) (cDNA clone:J013110N19, full insert sequence) Q7XWV6 Q7XWV6_ORYSJ Os04g0270200 Os04g0270200 OsJ_14079 OSJNBb0067G11.11 OSNPB_040270200 ENOG411ECKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DR5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0580700 protein (cDNA clone:J033047H18, full insert sequence) Q6EP38 Q6EP38_ORYSJ Os02g0580700 Os02g0580700 B1267B06.35 OJ1115_A05.10 OSNPB_020580700 ENOG411DR5S Q8LE63,F4JMQ2 Q8LE63_ARATH,F4JMQ2_ARATH FAM63A-like protein (DUF544) (Uncharacterized protein At4g11860),FAM63A-like protein (DUF544) 74428,58699 FAM63A-like protein (DUF544) (Uncharacterized protein At4g11860),FAM63A-like protein (DUF544) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; Lys48-specific deubiquitinase activity [GO:1990380]; thiol-dependent ubiquitin-specific protease activity [GO:0004843],Lys48-specific deubiquitinase activity [GO:1990380]; thiol-dependent ubiquitin-specific protease activity [GO:0004843] locus:2137050;,locus:2127223; AT4G11860,AT4G22960 Protein of unknown function (DUF544) Os06g0712400 protein (Putative NF-E2 inducible protein) (cDNA clone:J013108E08, full insert sequence),Os06g0712400 protein (Fragment) Q5Z800,A0A0P0X0V1 Q5Z800_ORYSJ,A0A0P0X0V1_ORYSJ Os06g0712400 OJ1663_H12.23 OSNPB_060712400,Os06g0712400 OSNPB_060712400 ENOG411DR53 GTF2H2 Q9ZVN9 TF2H2_ARATH General transcription factor IIH subunit 2 (AtGTF2H2) (TFIIH basal transcription factor complex p44 subunit) (Atp44) FUNCTION: Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription (By similarity). Can restore UV resistance in the NER-deficient ssl1-1 yeast mutant (PubMed:16623910). {ECO:0000250|UniProtKB:Q13888, ECO:0000269|PubMed:16623910}. R-ATH-113418;R-ATH-5696395;R-ATH-5696400;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 46978 General transcription factor IIH subunit 2 (AtGTF2H2) (TFIIH basal transcription factor complex p44 subunit) (Atp44) core TFIIH complex [GO:0000439]; holo TFIIH complex [GO:0005675]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; nucleotide-excision repair [GO:0006289]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] locus:504956103; AT1G05055 general transcription factor IIH subunit Os04g0508900 protein A0A0N7KJC3 A0A0N7KJC3_ORYSJ Os04g0508900 OSNPB_040508900 ENOG411DX4N B2GVN0,Q8LAD8,F4HQ89 B2GVN0_ARATH,Q8LAD8_ARATH,F4HQ89_ARATH At1g73470,Uncharacterized protein 27494,38795,39501 At1g73470,Uncharacterized protein locus:2206830; AT1G73470 Inherit from COG: UPF0174 protein Os09g0448900 protein A0A0P0XMJ3 A0A0P0XMJ3_ORYSJ Os09g0448900 OSNPB_090448900 ENOG411DX4J Q8RXP3,O81728 Q8RXP3_ARATH,O81728_ARATH PPPDE putative thiol peptidase family protein (Uncharacterized protein At1g47740),Expressed protein (PPPDE putative thiol peptidase family protein) (Uncharacterized protein At2g25190) (Uncharacterized protein At2g25190; T22F11.22) 31612,26698 PPPDE putative thiol peptidase family protein (Uncharacterized protein At1g47740),Expressed protein (PPPDE putative thiol peptidase family protein) (Uncharacterized protein At2g25190) (Uncharacterized protein At2g25190; T22F11.22) locus:2202452;,locus:2040204; AT1G47740,AT2G25190 UPF0326 protein Os03g0198500 protein (UPF0326 protein hag1, putative, expressed) (cDNA clone:001-007-H08, full insert sequence) (cDNA clone:006-206-H02, full insert sequence) Q10QF4 Q10QF4_ORYSJ LOC_Os03g10200 Os03g0198500 OsJ_09791 OSNPB_030198500 ENOG411DX4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML8 (Calmodulin-like protein 8) Q338P8 CML8_ORYSJ CML8 Os10g0389000 LOC_Os10g25010 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411DX4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Exonuc_X-T Os01g0618000 protein (cDNA clone:002-113-H01, full insert sequence) Q5ZDI4 Q5ZDI4_ORYSJ Os01g0618000 Os01g0618000 OSNPB_010618000 P0686E09.33 ENOG411DX4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flavin-containing monooxygenase Flavin-containing monooxygenase (EC 1.-.-.-),Os04g0223500 protein (Fragment) Q7XWZ6,Q69NJ7,Q7XWZ4,A0A0P0W7P7 Q7XWZ6_ORYSJ,Q69NJ7_ORYSJ,Q7XWZ4_ORYSJ,A0A0P0W7P7_ORYSJ Os04g0223500 Os04g0223500 OsJ_13890 OSJNBb0072N21.3 OSNPB_040223500,Os09g0548400 Os09g0548400 OJ1210_A07.1 OSNPB_090548400,Os04g0223901 OsJ_13891 OSJNBb0072N21.5 OSNPB_040223901,Os04g0223500 OSNPB_040223500 ENOG411DX4T FRS10 Q9LKR4,A0A1P8BEG3,A0A1P8BEH0,A0A1P8BEH3 FRS10_ARATH,A0A1P8BEG3_ARATH,A0A1P8BEH0_ARATH,A0A1P8BEH3_ARATH Putative protein FAR1-RELATED SEQUENCE 10,FAR1-related sequence 10 78525,78126,71075,71475 Putative protein FAR1-RELATED SEQUENCE 10,FAR1-related sequence 10 zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2182778; AT5G28530 FAR1-related sequence NA NA NA NA NA NA NA ENOG411DX4U C0Z2J1 C0Z2J1_ARATH AT1G11360 protein (Adenine nucleotide alpha hydrolases-like superfamily protein) 26508 AT1G11360 protein (Adenine nucleotide alpha hydrolases-like superfamily protein) cytosol [GO:0005829]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2200036; AT1G11360 Universal stress protein CHP-rich zinc finger protein-like (Os07g0551400 protein),CHP-rich zinc finger protein-like (Os07g0551400 protein) (cDNA clone:001-031-F04, full insert sequence),Os03g0375000 protein Q7XHV1,Q84S20,A0A0P0VYS5 Q7XHV1_ORYSJ,Q84S20_ORYSJ,A0A0P0VYS5_ORYSJ OSJNBb0041B22.112-1 Os07g0551400 OSNPB_070551400,OSJNBb0041B22.112-2 Os07g0551400 OSNPB_070551400,Os03g0375000 OSNPB_030375000 ENOG411DX44 FLCY P57681 PCYOX_ARATH Farnesylcysteine lyase (EC 1.8.3.6) no obvious phenotype FUNCTION: Involved in the degradation of prenylcysteine. Cleaves specifically the thioether bond of S-farnesyl-L-cysteine and has no activity with S-geranylgeranyl-L-cysteine. Recognizes also N-acetyl-farnesylcysteine and may have a role in deprenylation of farnesylated proteins. {ECO:0000269|PubMed:17425716}. MISCELLANEOUS: Plants with decreased levels of farnesylcysteine lyase exhibit delayed germination and hypersensitivity to abscisic acid. ARA:AT5G63910-MONOMER;MetaCyc:AT5G63910-MONOMER; R-ATH-114608; 1.8.3.5;1.8.3.6; 1.8.3.6 55298 Farnesylcysteine lyase (EC 1.8.3.6) lysosome [GO:0005764]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; farnesylcysteine lyase activity [GO:0102149]; prenylcysteine oxidase activity [GO:0001735]; abscisic acid-activated signaling pathway [GO:0009738]; farnesyl diphosphate metabolic process [GO:0045338]; prenylated protein catabolic process [GO:0030327]; prenylcysteine catabolic process [GO:0030328] TISSUE SPECIFICITY: Expressed in seedilings, flowers, stems, leaves and roots. {ECO:0000269|PubMed:17425716}. locus:2163966; AT5G63910 farnesylcysteine Os04g0692800 protein Q0J8Q1 Q0J8Q1_ORYSJ Os04g0692800 Os04g0692800 OSNPB_040692800 ENOG411DX45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein NA NA NA NA NA NA NA ENOG411DX42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os01g0314000 protein,Os01g0314000 protein (Fragment) Q8LQ82,A0A0P0V1Z9,A0A0P0V273 Q8LQ82_ORYSJ,A0A0P0V1Z9_ORYSJ,A0A0P0V273_ORYSJ Os01g0314000 B1011A07.47 OsJ_01491 OSNPB_010314000,Os01g0314000 OSNPB_010314000 ENOG411E6UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6UJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0754000 protein (cDNA clone:001-120-E05, full insert sequence) Q0JJ88 Q0JJ88_ORYSJ Os01g0754000 Os01g0754000 OsJ_03489 OSNPB_010754000 ENOG411DX3N A4FVN8 A4FVN8_ARATH At1g10580 (Transducin/WD40 repeat-like superfamily protein) R-ATH-72163; 65128 At1g10580 (Transducin/WD40 repeat-like superfamily protein) catalytic step 2 spliceosome [GO:0071013]; mRNA splicing, via spliceosome [GO:0000398] locus:2194589; AT1G10580 pre-mRNA-processing factor Os03g0397500 protein (Pre-mRNA splicing factor PRP17, putative, expressed) (Putative pre-mRNA splicing factor) (cDNA clone:J033044C19, full insert sequence) Q84MU4 Q84MU4_ORYSJ Os03g0397500 LOC_Os03g27970 Os03g0397500 Os03g27970 OSNPB_030397500 ENOG411EBNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DU6M F4JNL5 F4JNL5_ARATH ARM repeat superfamily protein 123478 ARM repeat superfamily protein locus:2117914; AT4G23540 NUC173 domain Nodulin-like (Os01g0957900 protein) Q5JK69 Q5JK69_ORYSJ Os01g0957900 Os01g0957900 OJ1294_F06.24 OsJ_04824 OSNPB_010957900 ENOG411DU65 COQ3 O49354 COQ3_ARATH Ubiquinone biosynthesis O-methyltransferase, mitochondrial (3-demethylubiquinol 3-O-methyltransferase) (EC 2.1.1.64) (EMBRYO DEFECTIVE 3002) (Polyprenyldihydroxybenzoate methyltransferase) (EC 2.1.1.114) Embryo defective; Preglobular-D. Meinke-2004 FUNCTION: O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. {ECO:0000255|HAMAP-Rule:MF_03190}. PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03190}. R-ATH-2142789; 2.1.1.114;2.1.1.64; 2.1.1.64; 2.1.1.114 35332 Ubiquinone biosynthesis O-methyltransferase, mitochondrial (3-demethylubiquinol 3-O-methyltransferase) (EC 2.1.1.64) (EMBRYO DEFECTIVE 3002) (Polyprenyldihydroxybenzoate methyltransferase) (EC 2.1.1.114) mitochondrial envelope [GO:0005740]; mitochondrial inner membrane [GO:0005743]; 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [GO:0008425]; 3-demethylubiquinone-9 3-O-methyltransferase activity [GO:0008689]; hexaprenyldihydroxybenzoate methyltransferase activity [GO:0004395]; polyprenyldihydroxybenzoate methyltransferase activity [GO:0010420]; ubiquinone biosynthetic process [GO:0006744] locus:2052761; AT2G30920 Hexaprenyldihydroxybenzoate methyltransferase Os06g0152400 protein,Ubiquinone biosynthesis O-methyltransferase, mitochondrial (3-demethylubiquinol 3-O-methyltransferase) (EC 2.1.1.64) (Polyprenyldihydroxybenzoate methyltransferase) (EC 2.1.1.114) Q0DEH3,Q0DEH4 Q0DEH3_ORYSJ,Q0DEH4_ORYSJ Os06g0152400 Os06g0152400 OSNPB_060152400,Os06g0152300 COQ3 Os06g0152300 OSNPB_060152300 FUNCTION: O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. {ECO:0000256|HAMAP-Rule:MF_03190}. ENOG411DU60 F4HS78 F4HS78_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 34703 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2035262; AT1G01180 Inherit from KOG: Retrotransposon protein Os09g0518900 protein Q69IU1 Q69IU1_ORYSJ P0498F03.12 Os09g0518900 OSJNOa211K08.7 OSNPB_090518900 ENOG411EC9K GAUT2 Q9ZPZ1,A0A068FL09,A0A1P8B2Q5,A0A1P8B2Q0 GAUT2_ARATH,A0A068FL09_ARATH,A0A1P8B2Q5_ARATH,A0A1P8B2Q0_ARATH Putative galacturonosyltransferase 2 (EC 2.4.1.-) (Like glycosyl transferase 2),Hexosyltransferase (EC 2.4.1.-) (Fragment),Hexosyltransferase (EC 2.4.1.-) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. MISCELLANEOUS: Expression not detected in roots, inflorescences, siliques, leaves or stems. The signal-anchor present in all the other members of the family is missing. PATHWAY: Glycan metabolism; pectin biosynthesis.,PATHWAY: Glycan metabolism; pectin biosynthesis. {ECO:0000256|RuleBase:RU362027}. 2.4.1.- 62091,64884,63475,60682 Putative galacturonosyltransferase 2 (EC 2.4.1.-) (Like glycosyl transferase 2),Hexosyltransferase (EC 2.4.1.-) (Fragment),Hexosyltransferase (EC 2.4.1.-) polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489],Golgi membrane [GO:0000139]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489] locus:2039934; AT2G46480 Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411EC9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3'5'-cyclic nucleotide phosphodiesterase NA NA NA NA NA NA NA ENOG411DQRX VHA-E1,VHA-E3,VHA-E2 Q39258,P0CAN7,Q9C9Z8,A0A1P8ANV6,A0A1P8ANX8 VATE1_ARATH,VATE3_ARATH,VATE2_ARATH,A0A1P8ANV6_ARATH,A0A1P8ANX8_ARATH V-type proton ATPase subunit E1 (V-ATPase subunit E1) (Protein EMBRYO DEFECTIVE 2448) (Vacuolar H(+)-ATPase subunit E isoform 1) (Vacuolar proton pump subunit E1),V-type proton ATPase subunit E3 (V-ATPase subunit E3) (Vacuolar H(+)-ATPase subunit E isoform 3) (Vacuolar proton pump subunit E3),V-type proton ATPase subunit E2 (V-ATPase subunit E2) (Vacuolar H(+)-ATPase subunit E isoform 2) (Vacuolar proton pump subunit E2),Vacuolar H+-ATPase subunit E isoform 3 DISRUPTION PHENOTYPE: Mutant embryos are lethal, displaying variably enlarged cells with multiple nuclei, large vacuoles containing inclusions, abnormal organization of Golgi stacks, and cell wall defects. {ECO:0000269|PubMed:15610355}. embryo lethality mutant cells were variably enlarged multinucleate and contained large vacuoles that accumulated inclusions staining pink with the pH-sensitive dye toluidine blue. Cell wall deposition was also affected: think cell walls local thickening and cell wall stubs. In addition Golgi stacks organization was impaired the stacks were horseshoe-shaped with large membrane vesicles accumulating nearby. Embryo defective; Globular-D. Meinke-2003 FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis. {ECO:0000269|PubMed:15610355}.,FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By similarity). {ECO:0000250}. R-ATH-1222556;R-ATH-77387;R-ATH-917977; 26060,27085,26853,22416,27181 V-type proton ATPase subunit E1 (V-ATPase subunit E1) (Protein EMBRYO DEFECTIVE 2448) (Vacuolar H(+)-ATPase subunit E isoform 1) (Vacuolar proton pump subunit E1),V-type proton ATPase subunit E3 (V-ATPase subunit E3) (Vacuolar H(+)-ATPase subunit E isoform 3) (Vacuolar proton pump subunit E3),V-type proton ATPase subunit E2 (V-ATPase subunit E2) (Vacuolar H(+)-ATPase subunit E isoform 2) (Vacuolar proton pump subunit E2),Vacuolar H+-ATPase subunit E isoform 3 cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; polysomal ribosome [GO:0042788]; proton-transporting two-sector ATPase complex, catalytic domain [GO:0033178]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; structural constituent of ribosome [GO:0003735]; ATP hydrolysis coupled proton transport [GO:0015991]; defense response to bacterium [GO:0042742]; embryo development ending in seed dormancy [GO:0009793]; Golgi organization [GO:0007030]; plant-type cell wall biogenesis [GO:0009832]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255],proton-transporting two-sector ATPase complex, catalytic domain [GO:0033178]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991],proton-transporting two-sector ATPase complex, catalytic domain [GO:0033178]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991] DEVELOPMENTAL STAGE: Expressed mainly in the endosperm and surrounding maternal tissues during seed development. {ECO:0000269|PubMed:15610355}.,DEVELOPMENTAL STAGE: Expressed during embryogenesis. {ECO:0000269|PubMed:15610355}. locus:2136088;,locus:2024527;,locus:2077893; AT4G11150,AT1G64200,AT3G08560 ATPase subunit Os01g0659200 protein (Putative H+-exporting ATPase) (cDNA clone:J023086K07, full insert sequence),Os05g0480700 protein (Putative YLP) (cDNA clone:J023123I11, full insert sequence) Q8SA35,Q5KQI7 Q8SA35_ORYSJ,Q5KQI7_ORYSJ Os01g0659200 OsJ_02889 OSNPB_010659200 P0684E06.9,Os05g0480700 OsJ_18946 OSJNBa0095J22.3 OSNPB_050480700 ENOG411EC9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411DQRQ GAF1 A0A1R7T3D2,A0A1R7T3D1,F4JXF0,F4JXF1 A0A1R7T3D2_ARATH,A0A1R7T3D1_ARATH,F4JXF0_ARATH,F4JXF1_ARATH Polymerase/histidinol phosphatase-like protein 75833,75264,78035,64079 Polymerase/histidinol phosphatase-like protein ribonuclease activity [GO:0004540]; tRNA processing [GO:0008033],mitochondrion [GO:0005739]; nucleolar ribonuclease P complex [GO:0005655]; nucleus [GO:0005634]; ribonuclease activity [GO:0004540]; RNA binding [GO:0003723]; embryo sac development [GO:0009553]; pollen tube development [GO:0048868]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; tRNA processing [GO:0008033] locus:2168068; AT5G59980 RNase P subunit p30 family protein Os11g0101200 protein (Os12g0101000 protein) (Fragment),Os12g0175900 protein A0A0P0XXP9,A0A0P0Y5R6,A0A0N7KTN4 A0A0P0XXP9_ORYSJ,A0A0P0Y5R6_ORYSJ,A0A0N7KTN4_ORYSJ Os11g0101200 Os12g0101000 OSNPB_110101200 OSNPB_120101000,Os12g0101000 Os11g0101200 OSNPB_110101200 OSNPB_120101000,Os12g0175900 OSNPB_120175900 ENOG411DQRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA inactive receptor kinase At2g26730-like NA NA NA NA NA NA NA ENOG411DT2F RPL21 P51412 RK21_ARATH 50S ribosomal protein L21, chloroplastic (CL21) FUNCTION: This protein binds to 23S ribosomal RNA in the presence of protein L20. {ECO:0000250}. 24038 50S ribosomal protein L21, chloroplastic (CL21) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; nucleus [GO:0005634]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; response to cold [GO:0009409]; thylakoid membrane organization [GO:0010027]; translation [GO:0006412] locus:2014711; AT1G35680 50S ribosomal protein L21 Os02g0259600 protein (Putative 50S ribosomal protein L21, chloroplast) (cDNA clone:006-201-D06, full insert sequence) (cDNA clone:J013000I04, full insert sequence),Os02g0259600 protein (Fragment) Q6K241,A0A0N7KF18 Q6K241_ORYSJ,A0A0N7KF18_ORYSJ Os02g0259600 Os02g0259600 B1178F07.15 OsJ_06142 OSJNBa0060K08.25 OSNPB_020259600,Os02g0259600 OSNPB_020259600 ENOG411DT2G UGT72E2,UGT72E3,UGT72E1 Q9LVR1,O81498,Q94A84 U72E2_ARATH,U72E3_ARATH,U72E1_ARATH UDP-glycosyltransferase 72E2 (EC 2.4.1.-) (Hydroxycinnamate 4-beta-glucosyltransferase) (EC 2.4.1.126),UDP-glycosyltransferase 72E3 (EC 2.4.1.-) (Hydroxycinnamate 4-beta-glucosyltransferase) (EC 2.4.1.126),UDP-glycosyltransferase 72E1 (EC 2.4.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants display a sugar-resistant seedling development phenotype. {ECO:0000269|PubMed:24320620}. FUNCTION: Involved in the O-glucosylation of monolignols (alcohol monomers of lignin). Glucosylates conyferyl and sinapyl alcohols to coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside, respectively. Glucosylates conyferyl and sinapyl aldehydes. Possesses low activity with sinapate and ferulate as substrates. {ECO:0000269|PubMed:11042211, ECO:0000269|PubMed:12721858, ECO:0000269|PubMed:15907484, ECO:0000269|PubMed:16995900, ECO:0000269|PubMed:21149736}.,FUNCTION: Involved in the O-glucosylation of monolignols (alcohol monomers of lignin). Acts with low specific activity on conyferyl and sinapyl alcohols to form coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside, respectively. Possesses low activity with sinapate as substrate. {ECO:0000269|PubMed:11042211, ECO:0000269|PubMed:15907484}.,FUNCTION: UDP-glycosyltransferase that glucosylates sinapyl and coniferyl aldehydes, but is not active in presence of their respective alcohols. Can glucosylate the phytotoxic xenobiotic compound 2,4,5-trichlorophenol (TCP). {ECO:0000269|PubMed:15907484}. MISCELLANEOUS: Plants overexpressing UGT72E2 show increased accumulation of monolignol glucosides in roots and appearance of these glucosides in leaves. ARA:AT5G66690-MONOMER;MetaCyc:AT5G66690-MONOMER;,ARA:AT5G26310-MONOMER;MetaCyc:AT5G26310-MONOMER;,ARA:AT3G50740-MONOMER; 2.4.1.-; 2.4.1.126,2.4.1.- 52992,52904,53363 UDP-glycosyltransferase 72E2 (EC 2.4.1.-) (Hydroxycinnamate 4-beta-glucosyltransferase) (EC 2.4.1.126),UDP-glycosyltransferase 72E3 (EC 2.4.1.-) (Hydroxycinnamate 4-beta-glucosyltransferase) (EC 2.4.1.126),UDP-glycosyltransferase 72E1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; coniferyl-alcohol glucosyltransferase activity [GO:0047209]; daphnetin 4-O-beta-glucosyltransferase activity [GO:0102359]; esculetin 4-O-beta-glucosyltransferase activity [GO:0102361]; hydroxycinnamate 4-beta-glucosyltransferase activity [GO:0047218]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; lignin metabolic process [GO:0009808],intracellular membrane-bounded organelle [GO:0043231]; coniferyl-alcohol glucosyltransferase activity [GO:0047209]; daphnetin 4-O-beta-glucosyltransferase activity [GO:0102359]; esculetin 4-O-beta-glucosyltransferase activity [GO:0102361]; hydroxycinnamate 4-beta-glucosyltransferase activity [GO:0047218]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634]; coniferyl-alcohol glucosyltransferase activity [GO:0047209]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; lignin metabolic process [GO:0009808]; response to toxic substance [GO:0009636] TISSUE SPECIFICITY: Expressed in seedlings and roots. {ECO:0000269|PubMed:16995900}.,TISSUE SPECIFICITY: Expressed in seedlings and roots, and at lower levels in flowers and siliques. {ECO:0000269|PubMed:16995900}.,TISSUE SPECIFICITY: Expressed in seedlings, roots and leaves. {ECO:0000269|PubMed:16995900}. locus:2173664;,locus:2151059;,locus:2101709; AT5G66690,AT5G26310,AT3G50740 UDP-glycosyltransferase coniferyl-alcohol glucosyltransferase transferase transferring glycosyl groups NA NA NA NA NA NA NA ENOG411DT2D Q9ZUR7 ARGJ_ARATH Arginine biosynthesis bifunctional protein ArgJ, chloroplastic [Cleaved into: Arginine biosynthesis bifunctional protein ArgJ alpha chain; Arginine biosynthesis bifunctional protein ArgJ beta chain] [Includes: Glutamate N-acetyltransferase (GAT) (EC 2.3.1.35) (Ornithine acetyltransferase) (OATase) (Ornithine transacetylase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)] FUNCTION: Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate. {ECO:0000255|HAMAP-Rule:MF_03124}. PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1. {ECO:0000255|HAMAP-Rule:MF_03124}.; PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4. {ECO:0000255|HAMAP-Rule:MF_03124}. ARA:AT2G37500-MONOMER; 2.3.1.35; 2.3.1.1 48714 Arginine biosynthesis bifunctional protein ArgJ, chloroplastic [Cleaved into: Arginine biosynthesis bifunctional protein ArgJ alpha chain; Arginine biosynthesis bifunctional protein ArgJ beta chain] [Includes: Glutamate N-acetyltransferase (GAT) (EC 2.3.1.35) (Ornithine acetyltransferase) (OATase) (Ornithine transacetylase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)] chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; acetyl-CoA:L-glutamate N-acetyltransferase activity [GO:0004042]; glutamate N-acetyltransferase activity [GO:0004358]; arginine biosynthetic process [GO:0006526]; ornithine biosynthetic process [GO:0006592] locus:2049781; AT2G37500 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of acetylglutamate from glutamate and acetyl-CoA and of ornithine by transacetylation between acetylornithine and glutamate (By similarity) Arginine biosynthesis bifunctional protein ArgJ, chloroplastic [Cleaved into: Arginine biosynthesis bifunctional protein ArgJ alpha chain; Arginine biosynthesis bifunctional protein ArgJ beta chain] [Includes: Glutamate N-acetyltransferase (GAT) (EC 2.3.1.35) (Ornithine acetyltransferase) (OATase) (Ornithine transacetylase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)] Q10N79 ARGJ_ORYSJ Os03g0279400 LOC_Os03g17120 FUNCTION: Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate. {ECO:0000255|HAMAP-Rule:MF_03124}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03124}. ENOG411DT2E MTM1 Q944H5 MTM1_ARATH Mitochondrial carrier protein MTM1 (Manganese tracking factor for mitochondrial SOD2) FUNCTION: Involved in the mitochondrial activation of MSD1 by specifically facilitating insertion of the essential manganese cofactor. Has the ability to activate iron regulon in an iron-dependent manner. {ECO:0000269|PubMed:17522887}. 44534 Mitochondrial carrier protein MTM1 (Manganese tracking factor for mitochondrial SOD2) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; metallochaperone activity [GO:0016530]; transmembrane transporter activity [GO:0022857]; transporter activity [GO:0005215]; manganese ion transport [GO:0006828]; mitochondrial transport [GO:0006839]; response to paraquat [GO:1901562] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17522887}. locus:2132947; AT4G27940 Mitochondrial carrier protein Os08g0386800 protein,Os08g0386800 protein (Putative mitochondrial carrier protein) (cDNA clone:002-117-B05, full insert sequence) (cDNA clone:J033075G13, full insert sequence) Q6ZA14,Q6ZA15 Q6ZA14_ORYSJ,Q6ZA15_ORYSJ P0434E03.16-2 Os08g0386800 OSNPB_080386800,P0434E03.16-1 Os08g0386800 OSNPB_080386800 ENOG411DT2B Q9LML4 Q9LML4_ARATH F10K1.7 protein (Glycosyltransferase) (O-glucosyltransferase rumi-like protein (DUF821)) 59235 F10K1.7 protein (Glycosyltransferase) (O-glucosyltransferase rumi-like protein (DUF821)) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664] locus:2007362; AT1G07220 CAP10 Os05g0149500 protein (Fragment) A0A0P0WHZ2 A0A0P0WHZ2_ORYSJ Os05g0149500 OSNPB_050149500 ENOG411DT2C ATPQ Q9FT52,Q2V3P9 ATP5H_ARATH,Q2V3P9_ARATH ATP synthase subunit d, mitochondrial (ATPase subunit d),ATP synthase D chain FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements (By similarity). {ECO:0000250}. 19586,13828 ATP synthase subunit d, mitochondrial (ATPase subunit d),ATP synthase D chain chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; cytosolic ribosome [GO:0022626]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrial proton-transporting ATP synthase, stator stalk [GO:0000274]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; hydrogen ion transmembrane transporter activity [GO:0015078]; hydrolase activity [GO:0016787]; structural constituent of ribosome [GO:0003735]; zinc ion binding [GO:0008270]; ATP hydrolysis coupled cation transmembrane transport [GO:0099132]; ATP synthesis coupled proton transport [GO:0015986]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255],mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [GO:0000276]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP synthesis coupled proton transport [GO:0015986] locus:2100509; AT3G52300 ATP synthase D chain mitochondrial ATP synthase subunit d, mitochondrial Q7XXS0 Q7XXS0_ORYSJ Os08g0478200 OJ1666_A04.19 OsJ_27679 OSNPB_080478200 FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. {ECO:0000256|PIRNR:PIRNR005514}. ENOG411DT2A SAG12 Q9FJ47 SAG12_ARATH Senescence-specific cysteine protease SAG12 (EC 3.4.22.-) (Cysteine proteinase SAG12) (Protein SENESCENCE-ASSOCIATED GENE 12) DISRUPTION PHENOTYPE: No visible effect on senescence. {ECO:0000269|PubMed:15743448}. Homozygous sag12-2 mutants showed no visibly altered phenotype during senescence compared with wild type plants. SAVs were detected in the mutant line. FUNCTION: Cysteine protease that may have a developmental senescence specific cell death function during apoptosis, heavy metal detoxification, and hypersensitive response. {ECO:0000305|PubMed:10380810, ECO:0000305|PubMed:10579486, ECO:0000305|PubMed:18212027, ECO:0000305|PubMed:18721318, ECO:0000305|PubMed:19143996, ECO:0000305|PubMed:19261736}. 3.4.22.- 38234 Senescence-specific cysteine protease SAG12 (EC 3.4.22.-) (Cysteine proteinase SAG12) (Protein SENESCENCE-ASSOCIATED GENE 12) extracellular space [GO:0005615]; lysosome [GO:0005764]; senescence-associated vacuole [GO:0010282]; cysteine-type endopeptidase activity [GO:0004197]; aging [GO:0007568]; defense response to fungus, incompatible interaction [GO:0009817]; floral organ senescence [GO:0080187]; leaf senescence [GO:0010150]; plant-type hypersensitive response [GO:0009626]; programmed cell death involved in cell development [GO:0010623]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to sucrose [GO:0009744]; response to UV-B [GO:0010224]; stress response to copper ion [GO:1990169] DEVELOPMENTAL STAGE: Senescent tissues specific expression (Ref.6, PubMed:10579486). Detected only after significant visible yellowing (PubMed:9617813). In unfertilised pistils, accumulates transiently shortly after anthesis, and increased again at the end of pistil development (PubMed:21575215). In ovules, first observed at the basal zone of the ovary, and progressively extend acropetally along the ovary (PubMed:21575215). {ECO:0000269|PubMed:10579486, ECO:0000269|PubMed:21575215, ECO:0000269|PubMed:9617813, ECO:0000269|Ref.6}. TISSUE SPECIFICITY: Found in senescent leaves, especially in senescence-associated vacuoles- (SAVs) containing cells (e.g. mesophyll and guard cells), and in senescencing ovules of unfertilised pistils. {ECO:0000269|PubMed:15743448, ECO:0000269|PubMed:21575215, ECO:0000269|Ref.6}. locus:2152445; AT5G45890 cysteine Senescence-specific cysteine protease SAG39 (EC 3.4.22.-) (Cysteine proteinase SAG39) (Protein SENESCENCE-ASSOCIATED GENE 39),Os12g0273800 protein (Vignain, putative),Os04g0208200 protein (Putative cysteine protease),Os04g0207600 protein Q7XWK5,Q2QU43,Q2TN87,A0A0N7KIN5 SAG39_ORYSJ,Q2QU43_ORYSJ,Q2TN87_ORYSJ,A0A0N7KIN5_ORYSJ SAG39 Os04g0206300 OsJ_13822 OSJNBa0052O21.11,Os12g0273800 LOC_Os12g17540 OsJ_17681 OSNPB_120273800,Os04g0208200 OSNPB_040208200,Os04g0207600 OSNPB_040207600 FUNCTION: Cysteine protease that may have a developmental senescence specific cell death function during apoptosis, heavy metal detoxification, and hypersensitive response. {ECO:0000250|UniProtKB:Q9FJ47}. ENOG411DT2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein NA NA NA NA NA NA NA ENOG411DT2M LHCA6 Q8LCQ4 LHCA6_ARATH Photosystem I chlorophyll a/b-binding protein 6, chloroplastic (LHCI type III LHCA6) DISRUPTION PHENOTYPE: Slightly lower NDH activity in immature leaves. No chlorophyll fluorescence increase in mature leaves. Smaller version of the NAD(P)H dehydrogenase-photosystem I supercomplex (NDH-PSI) supercomplex (PubMed:19903870). In the double mutant lhca5 lhca6, drastic reduction of NDH subunits accumulation upon increased light intensity (PubMed:21278308). {ECO:0000269|PubMed:19903870, ECO:0000269|PubMed:21278308}. FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. Seems involved in the function of the photosystem I in low light conditions, when other LHCA proteins are less abundant. Required, together with LHCA5, for the formation of a full-size NAD(P)H dehydrogenase-photosystem I supercomplex (NDH-PSI) that triggers cyclic and chlororespiratory electron transport in chloroplast thylakoids, especially under stress conditions (e.g. increased light intensity). {ECO:0000269|PubMed:19903870, ECO:0000269|PubMed:21278308, ECO:0000305|PubMed:21785130}. 29939 Photosystem I chlorophyll a/b-binding protein 6, chloroplastic (LHCI type III LHCA6) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; plastoglobule [GO:0010287]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114] locus:2202150; AT1G19150 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic Q69P91 Q69P91_ORYSJ Os09g0439500 Os09g0439500 OJ1344_B01.16 OSNPB_090439500 P0556H01.32 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DT2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC Os12g0605300 protein (Tesmin/TSO1-like CXC domain containing protein, expressed) Q2QMG8 Q2QMG8_ORYSJ LOC_Os12g41210 Os12g0605300 OSNPB_120605300 ENOG411DT2K DCL2 Q3EBC8,A0A1I9LR45 DCL2_ARATH,A0A1I9LR45_ARATH Endoribonuclease Dicer homolog 2 (EC 3.1.26.-) (Dicer-like protein 2) (AtDCL2),Dicer-like 2 FUNCTION: Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. {ECO:0000269|PubMed:16040244, ECO:0000269|PubMed:16810317, ECO:0000269|PubMed:17586651, ECO:0000269|PubMed:17592042, ECO:0000269|PubMed:18335032, ECO:0000269|PubMed:18353962}. 3.1.26.- 156865,132692 Endoribonuclease Dicer homolog 2 (EC 3.1.26.-) (Dicer-like protein 2) (AtDCL2),Dicer-like 2 cytoplasm [GO:0005737]; nucleus [GO:0005634]; RISC complex [GO:0016442]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; maintenance of DNA methylation [GO:0010216]; production of ta-siRNAs involved in RNA interference [GO:0010267]; RNA virus induced gene silencing [GO:0051214],ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2097705; AT3G03300 endoribonuclease Dicer homolog Endoribonuclease Dicer homolog 2b (Dicer-like protein 2b) (OsDCL2b) (EC 3.1.26.-),Endoribonuclease Dicer homolog 2a (Dicer-like protein 2a) (OsDCL2a) (EC 3.1.26.-),Os03g0583900 protein (Fragment),Os09g0315050 protein,Os09g0315100 protein Q69LX2,Q10HL3,A0A0P0VZM5,A0A0P0VZS2,A0A0P0XJV4,A0A0P0VZX0,A0A0P0XL41 DCL2B_ORYSJ,DCL2A_ORYSJ,A0A0P0VZM5_ORYSJ,A0A0P0VZS2_ORYSJ,A0A0P0XJV4_ORYSJ,A0A0P0VZX0_ORYSJ,A0A0P0XL41_ORYSJ DCL2B Os09g0315100 LOC_Os09g14610 OSJNBa0057D11.8-1 OSJNBb0079G12.35-1,DCL2A Os03g0583900 LOC_Os03g38740 OJ1785_A05.30,Os03g0583900 OSNPB_030583900,Os09g0315050 OSNPB_090315050,Os09g0315100 OSNPB_090315100 FUNCTION: Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs (By similarity). {ECO:0000250}. ENOG411DT2H PRMT16 Q944R7 ANM16_ARATH Protein arginine N-methyltransferase 1.6 (AtPRMT16) (AtPRMT7) (EC 2.1.1.-) FUNCTION: Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA). {ECO:0000250}. R-ATH-3214858; 2.1.1.- 80870 Protein arginine N-methyltransferase 1.6 (AtPRMT16) (AtPRMT7) (EC 2.1.1.-) cytosol [GO:0005829]; histone-arginine N-methyltransferase activity [GO:0008469]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; protein-arginine omega-N monomethyltransferase activity [GO:0035241]; peptidyl-arginine methylation, to symmetrical-dimethyl arginine [GO:0019918]; regulation of transcription, DNA-templated [GO:0006355] locus:2130824; AT4G16570 Protein arginine N-methyltransferase Protein arginine N-methyltransferase 7 (EC 2.1.1.-) Q5VS72 ANM7_ORYSJ PRMT7 Os06g0105500 LOC_Os06g01640 OsJ_019028 OsJ_19828 P0644B06.25 FUNCTION: Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA). {ECO:0000250}. ENOG411DT2I Q84TE2,Q8L788 Q84TE2_ARATH,Q8L788_ARATH At4g33120 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At4g33120),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At4g33110) ARA:AT4G33120-MONOMER;,ARA:AT4G33110-MONOMER; 40998,41229 At4g33120 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At4g33120),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At4g33110) plasma membrane [GO:0005886]; methyltransferase activity [GO:0008168],plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; methyltransferase activity [GO:0008168] locus:2125934;,locus:2125924; AT4G33120,AT4G33110 Coclaurine N-methyltransferase Os06g0574100 protein (Fragment) A0A0P0WXZ1 A0A0P0WXZ1_ORYSJ Os06g0574100 OSNPB_060574100 ENOG411DT2V MGO3.5 Q9LQP7,Q9LVG7 Q9LQP7_ARATH,Q9LVG7_ARATH Ankyrin repeat family protein (F24B9.19 protein),Ankyrin repeat family protein (Ankyrin-like protein) 58911,59575 Ankyrin repeat family protein (F24B9.19 protein),Ankyrin repeat family protein (Ankyrin-like protein) integral component of membrane [GO:0016021] locus:2026489;,locus:2164145; AT1G07710,AT5G60070 Ankyrin repeat-containing protein Ank repeat PF|00023 containing protein, putative, expressed (Os03g0281100 protein) (Putative ankyrin repeat containing protein) Q8H8W7 Q8H8W7_ORYSJ LOC_Os03g17250 Os03g0281100 OsJ_10370 OSNPB_030281100 ENOG411DT2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0597900 protein A0A0N7KJM2 A0A0N7KJM2_ORYSJ Os04g0597900 OSNPB_040597900 ENOG411DT2U PER40 O23474 PER40_ARATH Peroxidase 40 (Atperox P40) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G16270-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37460 Peroxidase 40 (Atperox P40) (EC 1.11.1.7) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] AT4G16270 peroxidase Peroxidase (EC 1.11.1.7) Q6UU25 Q6UU25_ORYSJ OJ1115_A07.117 prx118 Os08g0302000 OSJNBa0096K16.18 OSNPB_080302000 ENOG411DT2R Q9LSH4,F4J6D9,F4J6D8,F4J6D7 Q9LSH4_ARATH,F4J6D9_ARATH,F4J6D8_ARATH,F4J6D7_ARATH At3g17740 (Uncharacterized protein At3g17740/MIG5_3),Uncharacterized protein 130075,86841,89798,96867 At3g17740 (Uncharacterized protein At3g17740/MIG5_3),Uncharacterized protein catalytic step 2 spliceosome [GO:0071013]; RNA processing [GO:0006396],catalytic step 2 spliceosome [GO:0071013] locus:2089769;,locus:5019474753; AT3G17740,AT3G17712 Pfam:DUF1740 Os02g0772500 protein Q6ZHF3 Q6ZHF3_ORYSJ Os02g0772500 OJ1611_C08.15 OsJ_08551 OSNPB_020772500 ENOG411DT2S EMB2453 Q9SV96,F4JW43 PP358_ARATH,F4JW43_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic (Protein EMBRYO DEFECTIVE 2453),Tetratricopeptide repeat (TPR)-like superfamily protein Embryos consistently initiated cotyledons and continued growth and cell division beyond heart stage. Embryos consistently failed to elongate developing instead as v-shaped embryos with widestunted cotyledons and no hypocotyl. Embryo defective; Globular-D. Meinke-2002 FUNCTION: Essential for embryo development. {ECO:0000269|PubMed:15647901}. 65302,58944 Pentatricopeptide repeat-containing protein At4g39620, chloroplastic (Protein EMBRYO DEFECTIVE 2453),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451] locus:2122561; AT4G39620 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DT2P PCNA2,PCNA Q9ZW35,Q9M7Q7 PCNA2_ARATH,PCNA1_ARATH Proliferating cell nuclear antigen 2 (PCNA 2),Proliferating cellular nuclear antigen 1 (PCNA 1) FUNCTION: This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand (By similarity). May be involved in UV resistance. {ECO:0000250, ECO:0000269|PubMed:18494853}.,FUNCTION: This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand. {ECO:0000250}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174411;R-ATH-174414;R-ATH-174417;R-ATH-174437;R-ATH-5358565;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091;R-ATH-69166;R-ATH-69183; 29222,29122 Proliferating cell nuclear antigen 2 (PCNA 2),Proliferating cellular nuclear antigen 1 (PCNA 1) nucleus [GO:0005634]; PCNA complex [GO:0043626]; DNA binding [GO:0003677]; DNA polymerase processivity factor activity [GO:0030337]; error-prone translesion synthesis [GO:0042276]; leading strand elongation [GO:0006272]; mismatch repair [GO:0006298]; regulation of DNA replication [GO:0006275],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; PCNA complex [GO:0043626]; DNA binding [GO:0003677]; DNA polymerase processivity factor activity [GO:0030337]; leading strand elongation [GO:0006272]; mismatch repair [GO:0006298]; regulation of cell cycle [GO:0051726]; regulation of DNA replication [GO:0006275]; translesion synthesis [GO:0019985] locus:2043062;,locus:2025062; AT2G29570,AT1G07370 This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand (By similarity) Proliferating cell nuclear antigen (OsPCNA) (PCNA) (Cyclin) P17070 PCNA_ORYSJ Os02g0805200 LOC_Os02g56130 OJ1548_F12.18 OsJ_08777 OSJNBa0049O12.19 FUNCTION: This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand. ENOG411DT2Z TERT Q9SPU7,A0A1P8B9U1 TERT_ARATH,A0A1P8B9U1_ARATH Telomerase reverse transcriptase (AtTERT) (EC 2.7.7.49),Telomerase reverse transcriptase DISRUPTION PHENOTYPE: Low rates of telomere shortening at each generation. Null mutant plants can survive up to 10 generations before dying. Accelerated proliferation and cell death in dedifferentiated cells. {ECO:0000269|PubMed:10611295, ECO:0000269|PubMed:14579127, ECO:0000269|PubMed:17448460, ECO:0000269|PubMed:18239859}. AtTERT deficiency leads to telomere shortening and absence of telomerase activity.,During five generations of growth both tert and atm/tert lose about 500 bp of chromosome length per generation. But whereas tert mutants show no visible growth defects through the G6 generation atm/tert mutants in G5 show severe growth defects such as aberrant leaf shape delayed flowering a loss of apical dominance and reduced fertility. atm/tert mutants in G5 have a much higher rate of bridged chromosomes than G5 tert mutants.,atm tert mutants undergo Telomere Rapid Deletion (TRD) events that can lead to the production of a chromosome with a very short telomere. Just one of these structures can prompt end-to-end chromosomal fusion events in the G5 generation. The anaphase bridges apparent in these atm/tert mutants seem to involve only a single chromosome in each distinct mutant line and seem to occur between sister chromatids. These plants exhibit the same overall level of aneuploidy in the G5 generation as tert mutants do in the G6 generation (~52% of cells showing abnormal centromeric signals in interphase). atm/tert mutants are not as likely to undergo ALT (alternative lengthening of telomeres a telomerase-independent process) as tert mutants implicating AtM in this process.,atr/tert mutants show a more rapid loss of telomeric length than tert and atm/tert mutants and show a more rapid degeneration in growth habit becoming small with aberrant leaf shape and very low fertility by the third generation whereas tert mutants and tert/atm mutants show normal growth features until later generations. These mutants also have marked defects in chromosomal organization by G3 as evidenced by the presence of anaphase bridges sometimes involving multiple chromosomes a phenotype not seen in tert or atm/tert mutants.,In contrast to the ku70 mutant which undergo telomerase-dependent expansion to more than twice the normal length in a single generation the ku70 tert double mutant displays accelerated telomere shortening and a precocious onset of genome stability.,Same degree of telomere shortening as in the pot1 ku70 and ku70 tert double mutants.,Telomeres in the double mutants shortened at the same rate as in either single mutant.,Telomeres of the same length and sharp banding profile were found in the double mutant as in their tert and pot1-1 siblings.,50% of the mitotic nuclei in anaphase from tert mutants with severe growth defects (in the G8 generation) have anaphase bridges while none are found in comparable wild type controls. These anaphase bridges occur disproportionately often between rDNA regions. A number of chromosomal defects can also be visualized during metaphase in these mutants. About 30% of the leaf mesophyll cells examined in tert G8 mutants have elevated numbers of nucleoli.,No obvious phenotypic changes in the first (G1) or second (G2) generation. However starting in G1 the telomeric smear in AtTERT-deficient plants was replaced by several sharp bands. By G2 at least 11 discrete telomeric fragments were visible.,tert-2 mutants in the G4 generation exhibit shorter chromosomes but also form more massive calluses indicative of an accelerated cell cycle. These calluses also die more quickly than calluses from wild type plants. FUNCTION: Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. Required to prevent genome instability induced by breakage-fusion-bridge (BFB) cycles. Can extend completely non-telomeric sequences using RNA template in vitro. {ECO:0000269|PubMed:10471830, ECO:0000269|PubMed:10611295, ECO:0000269|PubMed:11359612, ECO:0000269|PubMed:14579127}. MISCELLANEOUS: In the absence of telomerase, telomeres decline by approximately 500 bp per generation, a rate 10 times slower than seen in telomerase-deficient mice. This may be due to alternative telomere lengthening, a process which is activated in early embryonic development. R-ATH-171319; 2.7.7.49 130580,111673 Telomerase reverse transcriptase (AtTERT) (EC 2.7.7.49),Telomerase reverse transcriptase chromosome, telomeric region [GO:0000781]; nucleus [GO:0005634]; telomerase catalytic core complex [GO:0000333]; metal ion binding [GO:0046872]; telomerase activity [GO:0003720]; telomerase RNA binding [GO:0070034]; telomerase RNA reverse transcriptase activity [GO:0003721]; telomeric DNA binding [GO:0042162]; chromosome localization [GO:0050000]; chromosome organization [GO:0051276]; meristem maintenance [GO:0010073]; nucleolus organization [GO:0007000]; root meristem growth [GO:0010449]; stem cell population maintenance [GO:0019827]; telomere maintenance [GO:0000723]; telomere maintenance via telomerase [GO:0007004],DNA binding [GO:0003677]; telomerase RNA reverse transcriptase activity [GO:0003721] locus:2148975; AT5G16850 Telomerase reverse transcriptase Telomerase reverse transcriptase (EC 2.7.7.49) (OsTERT) Q8LKW0 TERT_ORYSJ TERT Os12g0293100 LOC_Os12g19549 FUNCTION: Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme (By similarity). {ECO:0000250}. ENOG411DT2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0283050 protein (Putative receptor kinase Lecrk) Q6YWI9 Q6YWI9_ORYSJ Os07g0283050 Os07g0283050 OSJNBa0018O23.16 OSJNBa0028O21.4 OSNPB_070283050 ENOG411DT2Y GRF6,GRF8 P48349,P48348,F4KHY7,F4KGV5,F4KGV2 14336_ARATH,14338_ARATH,F4KHY7_ARATH,F4KGV5_ARATH,F4KGV2_ARATH 14-3-3-like protein GF14 lambda (14-3-3-like protein AFT1) (14-3-3-like protein RCI2) (General regulatory factor 6),14-3-3-like protein GF14 kappa (General regulatory factor 8),General regulatory factor 8,G-box regulating factor 6 DISRUPTION PHENOTYPE: Increased length of hypocotyls under dark-grown conditions. Altered actin arrays in hypocotyl cells. Enhanced freezing tolerance associated with enhanced cold induction of cold-responsive C-repeat-binding factor (CBF) target genes in the double mutant lacking both GRF6 and GRF8, probably due to the suppression of ubiquitin-mediated degradation DREB1A and DREB1B degradation by the 26S proteasome pathway (PubMed:28344081). {ECO:0000269|PubMed:26345162, ECO:0000269|PubMed:28344081}.,DISRUPTION PHENOTYPE: Disturbed levels of several metabolites (e.g. beta-alanine, ribose, aspartate, pyroglutamate, glutamate, asparagine, fructose-6-phosphate, myo-inositol, 1,4-diaminobutane, palmitate and shikimate). Enhanced freezing tolerance associated with enhanced cold induction of cold-responsive C-repeat-binding factor (CBF) target genes in the double mutant lacking both GRF6 and GRF8, probably due to the suppression of ubiquitin-mediated degradation DREB1A and DREB1B degradation by the 26S proteasome pathway (PubMed:28344081). {ECO:0000269|PubMed:22104211, ECO:0000269|PubMed:28344081}. FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes (By similarity). Specific negative regulator of slow-vacuolar (SV) ion channel. Mediates F-actin dynamics possibly through inhibiting ADF1 phosphorylation (PubMed:26345162). Negative regulator of freezing tolerance that modulates cold-responsive C-repeat-binding factors (CBF) DREB1A AND DREB1B proteins stability by facilitating their ubiquitin-mediated degradation when activated by CRPK1-mediated phosophorylation in freezing conditions (PubMed:28344081). {ECO:0000250, ECO:0000269|PubMed:17764516, ECO:0000269|PubMed:26345162, ECO:0000269|PubMed:28344081}.,FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. Involved in the regulation of nutrient metabolism (PubMed:22104211). Negative regulator of freezing tolerance that modulates cold-responsive C-repeat-binding factors (CBF) DREB1A AND DREB1B proteins stability by facilitating their ubiquitin-mediated degradation (PubMed:28344081). {ECO:0000269|PubMed:22104211, ECO:0000269|PubMed:28344081}. R-ATH-1445148;R-ATH-3371453;R-ATH-3371511; 27976,28029,29531,29131,27718 14-3-3-like protein GF14 lambda (14-3-3-like protein AFT1) (14-3-3-like protein RCI2) (General regulatory factor 6),14-3-3-like protein GF14 kappa (General regulatory factor 8),General regulatory factor 8,G-box regulating factor 6 cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein domain specific binding [GO:0019904]; brassinosteroid mediated signaling pathway [GO:0009742]; defense response to bacterium [GO:0042742]; response to cadmium ion [GO:0046686]; response to freezing [GO:0050826],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein domain specific binding [GO:0019904]; regulation of metabolic process [GO:0019222]; response to freezing [GO:0050826],cell wall [GO:0005618]; chloroplast [GO:0009507]; nucleus [GO:0005634]; protein domain specific binding [GO:0019904]; brassinosteroid mediated signaling pathway [GO:0009742],protein domain specific binding [GO:0019904] locus:2142489;,locus:2168262; AT5G10450,AT5G65430 14-.3.3 protein NA NA NA NA NA NA NA ENOG411DT26 Q9C524 SCRK6_ARATH Probable fructokinase-6, chloroplastic (EC 2.7.1.4) FUNCTION: May play an important role in maintaining the flux of carbon towards starch formation. {ECO:0000250|UniProtKB:Q6XZ79}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT1G66430-MONOMER; Starch and sucrose metabolism (00500),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 2.7.1.4 41471 Probable fructokinase-6, chloroplastic (EC 2.7.1.4) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; carbohydrate biosynthetic process [GO:0016051]; fatty acid biosynthetic process [GO:0006633]; starch biosynthetic process [GO:0019252] locus:2028987; AT1G66430 pfkB family carbohydrate kinase Os06g0232200 protein B9FSC3 B9FSC3_ORYSJ Os06g0232200 OsJ_20703 OSNPB_060232200 ENOG411DT24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411DT25 Q501F4,Q9LHE6 Q501F4_ARATH,Q9LHE6_ARATH At3g19990 (E3 ubiquitin-protein ligase),E3 ubiquitin-protein ligase 48416,51518 At3g19990 (E3 ubiquitin-protein ligase),E3 ubiquitin-protein ligase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; intraciliary transport particle A [GO:0030991]; ligase activity [GO:0016874]; intraciliary retrograde transport [GO:0035721]; protein localization to cilium [GO:0061512],ligase activity [GO:0016874] locus:2095350; AT3G19990 NA Os02g0828500 protein,Os02g0828200 protein (cDNA clone:J023083N21, full insert sequence),Os03g0251425 protein Q6K7P6,Q6K7P8,A0A0N7KGY2 Q6K7P6_ORYSJ,Q6K7P8_ORYSJ,A0A0N7KGY2_ORYSJ Os02g0828500 OSNPB_020828500 P0452F04.40,Os02g0828200 OSNPB_020828200 P0452F04.36,Os03g0251425 OSNPB_030251425 ENOG411DT22 CESA4 Q84JA6,A0A1R7T3H6,A0A1R7T3H5 CESA4_ARATH,A0A1R7T3H6_ARATH,A0A1R7T3H5_ARATH Cellulose synthase A catalytic subunit 4 [UDP-forming] (AtCesA4) (EC 2.4.1.12) (Protein IRREGULAR XYLEM 5) (AtIRX5),Cellulose synthase (EC 2.4.1.12),Cellulose synthase A4 DISRUPTION PHENOTYPE: Enhanced resistance to the pathogens Ralstonia solanacearum and Plectosphaerella cucumerina. {ECO:0000269|PubMed:17351116}. Plants have small stature reduced cellulose and irregular xylem. Short inflorescence stems; Increased xylem-S. Turner-2003 FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the secondary cell wall formation. Required for the xylem cell wall thickening. {ECO:0000269|PubMed:12538856, ECO:0000269|PubMed:17351116}. PATHWAY: Glycan metabolism; plant cellulose biosynthesis.,PATHWAY: Glycan metabolism; plant cellulose biosynthesis. {ECO:0000256|RuleBase:RU361116}. MetaCyc:MONOMER-2364; 2.4.1.12; 2.4.1.12 119599,122980,87201 Cellulose synthase A catalytic subunit 4 [UDP-forming] (AtCesA4) (EC 2.4.1.12) (Protein IRREGULAR XYLEM 5) (AtIRX5),Cellulose synthase (EC 2.4.1.12),Cellulose synthase A4 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; plant-type primary cell wall biogenesis [GO:0009833]; plant-type secondary cell wall biogenesis [GO:0009834],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type secondary cell wall biogenesis [GO:0009834],integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244] DEVELOPMENTAL STAGE: Not expressed in embryos. In young leaves, localized in transient patches along the vascular system. In young inflorescence stems, observed in vascular bundles of primary xylems. In maturing inflorescence stems, most pronounced in regions of developing interfascicular fibers. {ECO:0000269|PubMed:10938350}. TISSUE SPECIFICITY: Confined to secondary cell wall developing tissues such as xylems and interfascicular regions. Expressed in roots, hypocotyls, leaves, inflorescences and flowers. {ECO:0000269|PubMed:10938350, ECO:0000269|PubMed:12481071, ECO:0000269|PubMed:12538856}. locus:2172457; AT5G44030 cellulose synthase A catalytic subunit Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (OsCesA7),Os10g0467800 protein (Fragment) Q9AV71,A0A0P0XV21 CESA7_ORYSJ,A0A0P0XV21_ORYSJ CESA7 Os10g0467800 LOC_Os10g32980 OSJNBa0006L06.10,Os10g0467800 OSNPB_100467800 DISRUPTION PHENOTYPE: Plants develop a brittle culm (bc) phenotype with a reduction of up to 75% percent of cellulose content in culm. {ECO:0000269|PubMed:12970476}. FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity). Involved in the secondary cell wall formation. {ECO:0000250, ECO:0000269|PubMed:12970476}. ENOG411DT23 O04420 URIC_ARATH Uricase (EC 1.7.3.3) (Nodulin-35 homolog) (Urate oxidase) FUNCTION: Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin. PATHWAY: Purine metabolism; urate degradation; (S)-allantoin from urate: step 1/3. ARA:AT2G26230-MONOMER; Caffeine metabolism (00232),Microbial metabolism in diverse environments (01120),Purine metabolism (00230),Metabolic pathways (01100) 1.7.3.3 34881 Uricase (EC 1.7.3.3) (Nodulin-35 homolog) (Urate oxidase) peroxisome [GO:0005777]; urate oxidase activity [GO:0004846]; peroxisome organization [GO:0007031]; purine nucleobase metabolic process [GO:0006144]; urate catabolic process [GO:0019628] locus:2057727; AT2G26230 Catalyzes the oxidation of uric acid to 5- hydroxyisourate which is further processed to form (S)-allantoin (By similarity) Uricase (EC 1.7.3.3),Uricase (EC 1.7.3.3) (Urate oxidase) Q5N7F6,Q94CU3 Q5N7F6_ORYSJ,Q94CU3_ORYSJ P0423B08.43-2 Os01g0865100 P0505D12.9-2 OSNPB_010865100,P0423B08.43-1 P0505D12.9-1 Os01g0865100 OsJ_04190 OSNPB_010865100 FUNCTION: Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin. {ECO:0000256|RuleBase:RU004455}.,FUNCTION: Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin. {ECO:0000256|PIRNR:PIRNR000241, ECO:0000256|RuleBase:RU004455}. ENOG411DT20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SERPIN Serpin-Z1 (OrysaZ1) Q94DW6 SPZ1_ORYSJ Os01g0765400 LOC_Os01g56010 OsJ_003479 P0403C05.26 FUNCTION: Probable serine protease inhibitor. {ECO:0000250}. ENOG411DT28 GLU2,GLU1 Q9T0P4,Q9ZNZ7 GLTB2_ARATH,GLTB1_ARATH Ferredoxin-dependent glutamate synthase 2, chloroplastic (EC 1.4.7.1) (Fd-GOGAT 2),Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial (EC 1.4.7.1) (Fd-GOGAT 1) DISRUPTION PHENOTYPE: No visible phenotype. The glutamate and glutamine levels were unaffected. {ECO:0000269|PubMed:19555410}.,DISRUPTION PHENOTYPE: Displays photorespiratory chlorosis when grown at ambient CO2. {ECO:0000269|PubMed:19223513}. Chlorotic unless grown under non-photorespiratory conditions-G. Coruzzi-1998 FUNCTION: May play a role in primary nitrogen assimilation in roots. Could supply a constitutive level of glutamate to maintain a basal level of protein synthesis. {ECO:0000269|PubMed:19555410, ECO:0000269|PubMed:9596633}.,FUNCTION: Involved in glutamate biosynthesis in leaf. Required for the reassimilation of ammonium ions generated during photorespiration. {ECO:0000269|PubMed:19223513, ECO:0000269|PubMed:19468822, ECO:0000269|PubMed:19555410, ECO:0000269|PubMed:9596633}. PATHWAY: Amino-acid biosynthesis; L-glutamate biosynthesis via GLT pathway; L-glutamate from 2-oxoglutarate and L-glutamine (ferredoxin route): step 1/1.; PATHWAY: Energy metabolism; nitrogen metabolism. ARA:AT2G41220-MONOMER;,ARA:AT5G04140-MONOMER; 1.4.7.1; 1.4.7.1 177752,176752 Ferredoxin-dependent glutamate synthase 2, chloroplastic (EC 1.4.7.1) (Fd-GOGAT 2),Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial (EC 1.4.7.1) (Fd-GOGAT 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3 iron, 4 sulfur cluster binding [GO:0051538]; glutamate synthase (ferredoxin) activity [GO:0016041]; glutamate synthase activity [GO:0015930]; metal ion binding [GO:0046872]; ammonia assimilation cycle [GO:0019676]; glutamate biosynthetic process [GO:0006537]; L-glutamate biosynthetic process [GO:0097054],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; 3 iron, 4 sulfur cluster binding [GO:0051538]; glutamate synthase (ferredoxin) activity [GO:0016041]; metal ion binding [GO:0046872]; ammonia assimilation cycle [GO:0019676]; glutamate biosynthetic process [GO:0006537]; L-glutamate biosynthetic process [GO:0097054]; photorespiration [GO:0009853]; positive regulation of glycine hydroxymethyltransferase activity [GO:0080114]; response to light stimulus [GO:0009416]; response to sucrose [GO:0009744] TISSUE SPECIFICITY: Expressed predominantly in roots and slightly in leaves. Low expression in the leaf mesophyll and phloem companion cell-sieve element complex. {ECO:0000269|PubMed:19555410, ECO:0000269|PubMed:9596633}.,TISSUE SPECIFICITY: Highly expressed in leaves. High expression in the leaf mesophyll and phloem companion cell-sieve element complex. {ECO:0000269|PubMed:19555410, ECO:0000269|PubMed:9596633}. locus:2040317;,locus:2146718; AT2G41220,AT5G04140 Glutamate synthase Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT),Os07g0658400 protein (Fragment) Q69RJ0,A0A0P0X9S7,A0A0P0X9Q0 GLTB_ORYSJ,A0A0P0X9S7_ORYSJ,A0A0P0X9Q0_ORYSJ GLU Os07g0658400 LOC_Os07g46460 OJ1477_F01.112 P0047B07.133,Os07g0658400 OSNPB_070658400 FUNCTION: Involved in glutamate biosynthesis in leaf. Required for the reassimilation of ammonium ions generated during photorespiration (By similarity). {ECO:0000250}. ENOG411DT29 PSP O82796,A0A1P8AMY1 SERC_ARATH,A0A1P8AMY1_ARATH Phosphoserine phosphatase, chloroplastic (PSP) (PSPase) (EC 3.1.3.3) (O-phosphoserine phosphohydrolase),3-phosphoserine phosphatase DISRUPTION PHENOTYPE: Embryo lethal when homozygous. {ECO:0000269|PubMed:23771893, ECO:0000269|PubMed:24368794}. FUNCTION: Catalyzes the last step in the plastidial phosphorylated pathway of serine biosynthesis (PPSB). The reaction mechanism proceeds via the formation of a phosphoryl-enzyme intermediates. Required for embryo, pollen and root development. May be required preferentially for serine biosynthesis in non-photosynthetic tissues. {ECO:0000269|PubMed:10196182, ECO:0000269|PubMed:23771893}. PATHWAY: Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 3/3. ARA:AT1G18640-MONOMER;MetaCyc:AT1G18640-MONOMER; R-ATH-977347; 3.1.3.3; 3.1.3.3 32318,31024 Phosphoserine phosphatase, chloroplastic (PSP) (PSPase) (EC 3.1.3.3) (O-phosphoserine phosphohydrolase),3-phosphoserine phosphatase chloroplast [GO:0009507]; calcium ion binding [GO:0005509]; magnesium ion binding [GO:0000287]; phosphoserine phosphatase activity [GO:0004647]; embryo development ending in seed dormancy [GO:0009793]; L-serine biosynthetic process [GO:0006564]; L-serine metabolic process [GO:0006563]; pollen development [GO:0009555]; root development [GO:0048364],phosphoserine phosphatase activity [GO:0004647]; L-serine biosynthetic process [GO:0006564] TISSUE SPECIFICITY: Ubiquitous. Mainly expressed in shoot and root meristems, vasculature, pollen, anthers, carpels and seeds. {ECO:0000269|PubMed:23771893}. locus:2027433; AT1G18640 phosphoserine phosphatase Os11g0629500 protein (Phosphoserine phosphatase, putative, expressed) (cDNA clone:J023133N19, full insert sequence) Q2R0W7 Q2R0W7_ORYSJ Os11g0629500 LOC_Os11g41160 Os11g0629500 OSNPB_110629500 ENOG411EMGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411DYCB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411DYCC Q9SKB8,Q9SYK5 Q9SKB8_ARATH,Q9SYK5_ARATH Ankyrin repeat family protein (Ankyrin-like protein),Ankyrin repeat family protein (F3F20.9 protein) 73138,68698 Ankyrin repeat family protein (Ankyrin-like protein),Ankyrin repeat family protein (F3F20.9 protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2045233;,locus:2031948; AT2G31820,AT1G05640 Ankyrin repeat-containing protein Ankyrin-like protein (Os09g0518500 protein) (cDNA clone:J023122L09, full insert sequence),Os08g0542700 protein (cDNA clone:J023112E24, full insert sequence),Os09g0518500 protein (Fragment) Q69IU6,Q0J407,A0A0P0XQM1,A0A0P0XQL0 Q69IU6_ORYSJ,Q0J407_ORYSJ,A0A0P0XQM1_ORYSJ,A0A0P0XQL0_ORYSJ P0498F03.5 Os09g0518500 OsJ_30032 OSNPB_090518500 P0217C03.12,Os08g0542700 Os08g0542700 OsJ_28140 OSNPB_080542700,Os09g0518500 OSNPB_090518500 ENOG411DYCD O80798 O80798_ARATH AT1G65270 protein (At1g65270) (ER membrane protein complex subunit-like protein) (Expressed protein) (T8F5.4 protein) 32535 AT1G65270 protein (At1g65270) (ER membrane protein complex subunit-like protein) (Expressed protein) (T8F5.4 protein) endoplasmic reticulum [GO:0005783]; vacuolar membrane [GO:0005774] locus:2206270; AT1G65270 UPF0510 protein INM02-like Expressed protein (Os11g0264600 protein) (cDNA, clone: J100079I22, full insert sequence) Q53LT9 Q53LT9_ORYSJ Os11g0264600 LOC_Os11g16320 OSNPB_110264600 ENOG411DYCE EXLA3,EXLA2,EXLA1 Q9LZT5,Q9SVE5,Q9LZT4,A0A1I9LT21 EXLA3_ARATH,EXLA2_ARATH,EXLA1_ARATH,A0A1I9LT21_ARATH Expansin-like A3 (At-EXPL3) (AtEXLA3) (AtEXPL3) (Ath-ExpBeta-2.3),Expansin-like A2 (At-EXPL2) (AtEXLA2) (AtEXPL2) (Ath-ExpBeta-2.2),Expansin-like A1 (At-EXPL1) (AtEXLA1) (AtEXPL1) (Ath-ExpBeta-2.1),Expansin-like A1 28559,28643,28702,25926 Expansin-like A3 (At-EXPL3) (AtEXLA3) (AtEXPL3) (Ath-ExpBeta-2.3),Expansin-like A2 (At-EXPL2) (AtEXLA2) (AtEXPL2) (Ath-ExpBeta-2.2),Expansin-like A1 (At-EXPL1) (AtEXLA1) (AtEXPL1) (Ath-ExpBeta-2.1),Expansin-like A1 cytosol [GO:0005829]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506],extracellular region [GO:0005576]; sexual reproduction [GO:0019953],cell wall [GO:0005618]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506],extracellular region [GO:0005576] locus:2077167;,locus:2121803;,locus:2077177; AT3G45960,AT4G38400,AT3G45970 expansin-like Expansin-like A1 (OsEXLA1) (OsEXPL1) (OsaEXPb2.1),Expansin-like A2 (OsEXLA2) (OsEXPL2) (OsaEXPb2.2) Q10S70,Q7XCL0 EXLA1_ORYSJ,EXLA2_ORYSJ EXLA1 EXPL1 Os03g0132200 LOC_Os03g04020 OJ1004C08.4 OsJ_09301,EXLA2 EXPL2 Os10g0542400 LOC_Os10g39640 OSJNBb0015I11.10 ENOG411DYCF GLR2.9,GLR2.7,GLR2.8 O81078,Q8LGN0,Q9C5V5,A0A1P8B074,A0A1P8B2P8 GLR29_ARATH,GLR27_ARATH,GLR28_ARATH,A0A1P8B074_ARATH,A0A1P8B2P8_ARATH Glutamate receptor 2.9 (Ligand-gated ion channel 2.9),Glutamate receptor 2.7 (Ligand-gated ion channel 2.7),Glutamate receptor 2.8 (Ligand-gated ion channel 2.8),Glutamate receptor FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 106266,107406,107189,107320,106528 Glutamate receptor 2.9 (Ligand-gated ion channel 2.9),Glutamate receptor 2.7 (Ligand-gated ion channel 2.7),Glutamate receptor 2.8 (Ligand-gated ion channel 2.8),Glutamate receptor integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots. {ECO:0000269|PubMed:12082126}.,TISSUE SPECIFICITY: Expressed predominantly in leaves. {ECO:0000269|PubMed:12082126}. locus:2066148;,locus:2066107;,locus:2066086; AT2G29100,AT2G29120,AT2G29110 Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411DYCG RH29 O49289 RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase 29 (EC 3.6.4.13) 3.6.4.13 93503 Putative DEAD-box ATP-dependent RNA helicase 29 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2025227; AT1G77030 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 29 (RNAH) (EC 3.6.4.13) A3BT52 RH29_ORYSJ Os08g0416100 LOC_Os08g32090 OsJ_026224 OsJ_27320 P0433E10.15 ENOG411DYCI JJJ1 Q9C911 JJJ1_ARATH DNAJ protein JJJ1 homolog (AtJJJ1) 72476 DNAJ protein JJJ1 homolog (AtJJJ1) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2019647; AT1G74250 dnaJ homolog subfamily C member 21-like DnaJ domain containing protein, expressed (Os12g0502700 protein) Q2QQ93 Q2QQ93_ORYSJ Os12g0502700 LOC_Os12g31840 Os12g0502700 OSNPB_120502700 ENOG411DYCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutamate receptor NA NA NA NA NA NA NA ENOG411DYCP ALG12 A8MR93 ALG12_ARATH Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase (EC 2.4.1.260) (Alpha-1,6-mannosyltransferase ALG12) (Asparagine-linked glycosylation protein 12) (EMS-mutagenized BRI1 suppressor 4) FUNCTION: Required for N-linked oligosaccharide assembly. Adds the eighth mannose residue in an alpha-1,6 linkage onto the dolichol-PP-oligosaccharide precursor dolichol-PP-Man(7)GlcNAc(2). {ECO:0000269|PubMed:20023196}. MISCELLANEOUS: In the absence of ALG12 activity, the N-glycans transferred to proteins are aberrant, indicating that the oligosaccharyltransferase (OST) complex is substrate-tolerant. PATHWAY: Protein modification; protein glycosylation. ARA:GQT-2225-MONOMER; R-ATH-446193; 2.4.1.260; 2.4.1.260 57192 Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase (EC 2.4.1.260) (Alpha-1,6-mannosyltransferase ALG12) (Asparagine-linked glycosylation protein 12) (EMS-mutagenized BRI1 suppressor 4) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity [GO:0052917]; protein N-linked glycosylation [GO:0006487]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:4010713407; AT1G02145 Alg9-like mannosyltransferase family Mannosyltransferase (EC 2.4.1.-) Q7XMZ9 Q7XMZ9_ORYSJ Os04g0544900 OsJ_15658 OSJNBb0038F03.12 OSNPB_040544900 ENOG411DYCQ Q9FX03 Q9FX03_ARATH At1g47310 (Signal peptidase I) (T3F24.7 protein) (Uncharacterized protein At1g47310) 44558 At1g47310 (Signal peptidase I) (T3F24.7 protein) (Uncharacterized protein At1g47310) locus:2203751; AT1G47310 NA Os03g0765100 protein (Fragment) Q0DNA0 Q0DNA0_ORYSJ Os03g0765100 OSNPB_030765100 ENOG411DYCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Carbonyl reductase-like protein (Os07g0685800 protein) Q7XIR1 Q7XIR1_ORYSJ OJ1200_C08.105 OJ1150_E04.101 Os07g0685800 OSNPB_070685800 ENOG411DYCS Q8RWE1,A0A1P8B5I6 Q8RWE1_ARATH,A0A1P8B5I6_ARATH Metallo-beta-lactamase family protein (Uncharacterized protein At4g33540),Metallo-beta-lactamase family protein 39638,29561 Metallo-beta-lactamase family protein (Uncharacterized protein At4g33540),Metallo-beta-lactamase family protein protein domain specific binding [GO:0019904]; response to arsenic-containing substance [GO:0046685] locus:2134163; AT4G33540 Metallo-beta-lactamase superfamily Os02g0829600 protein,Metallo-beta-lactamase-like (Os02g0829500 protein) (cDNA clone:001-035-C11, full insert sequence) (cDNA clone:006-304-C07, full insert sequence) (cDNA clone:J013000F10, full insert sequence) (cDNA clone:J033112F11, full insert sequence),Os02g0829500 protein C7IY67,Q6K9T9,A0A0P0VRK5 C7IY67_ORYSJ,Q6K9T9_ORYSJ,A0A0P0VRK5_ORYSJ Os02g0829600 Os02g0829600 OSNPB_020829600,OJ1124_D06.11-1 Os02g0829500 OSNPB_020829500,Os02g0829500 OSNPB_020829500 ENOG411DYCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1719) Os07g0122000 protein (cDNA clone:J033095G03, full insert sequence),Os07g0120900 protein (cDNA clone:J033055I03, full insert sequence),Os07g0121100 protein (cDNA clone:J033104A05, full insert sequence),Os07g0121000 protein (cDNA clone:J023148M03, full insert sequence),Os07g0122200 protein,Os07g0122300 protein (cDNA clone:001-130-E05, full insert sequence) (cDNA clone:J033122M09, full insert sequence) Q7XIE4,Q8LHX1,Q7XIE6,Q8LHX2,Q6Z4S9,Q6Z4S8 Q7XIE4_ORYSJ,Q8LHX1_ORYSJ,Q7XIE6_ORYSJ,Q8LHX2_ORYSJ,Q6Z4S9_ORYSJ,Q6Z4S8_ORYSJ P0022B05.146 Os07g0122000 OSJNBa0057M23.118 OSNPB_070122000,P0022B05.131 Os07g0120900 OsJ_22920 OSJNBa0057M23.103 OSNPB_070120900,P0022B05.132 Os07g0121100 OsJ_22921 OSJNBa0057M23.104 OSNPB_070121100,P0022B05.130 Os07g0121000 OsJ_22919 OSJNBa0057M23.102 OSNPB_070121000,Os07g0122200 OSJNBa0057M23.121 OSNPB_070122200,Os07g0122300 Os07g0122300 OSJNBa0057M23.122 OSNPB_070122300 ENOG411DYCU USP Q9C5I1 USP_ARATH UDP-sugar pyrophosphorylase (AtUSP) (EC 2.7.7.64) DISRUPTION PHENOTYPE: Plants produce collapsed, nonviable pollen grains (PubMed:16557401, PubMed:23373795). Male sterility (PubMed:17341835). {ECO:0000269|PubMed:16557401, ECO:0000269|PubMed:17341835, ECO:0000269|PubMed:23373795}. Male fertility is completely abolished in the mutant.,Mutation is lethal in the homozygous state. Complete male gametophyte defective-Y. Tsumuraya-2007 FUNCTION: Required for the synthesis of the intine, the pectocellulosic inner wall of developing pollen. May function as the terminal enzyme of the myo-inositol oxidation (MIO) pathway. May also play a role in the salvage pathway for synthesis of nucleotide sugars (PubMed:16557401, PubMed:16757173, PubMed:23373795). Can use a wide range of substrates including glucose-1-phosphate, galactose-1-phosphate, xylose-1-phosphate, arabinose-1-phosphate and glucuronate-1-phosphate (PubMed:17341835). {ECO:0000269|PubMed:16557401, ECO:0000269|PubMed:16757173, ECO:0000269|PubMed:17341835, ECO:0000269|PubMed:23373795}. ARA:AT5G52560-MONOMER;MetaCyc:AT5G52560-MONOMER; 2.7.7.64; 2.7.7.64 67852 UDP-sugar pyrophosphorylase (AtUSP) (EC 2.7.7.64) cytosol [GO:0005829]; pollen tube [GO:0090406]; glucuronate-1-phosphate uridylyltransferase activity [GO:0047350]; UTP-monosaccharide-1-phosphate uridylyltransferase activity [GO:0051748]; UTP:arabinose-1-phosphate uridylyltransferase activity [GO:0010491]; UTP:galactose-1-phosphate uridylyltransferase activity [GO:0017103]; UTP:glucose-1-phosphate uridylyltransferase activity [GO:0003983]; UTP:xylose-1-phosphate uridylyltransferase activity [GO:0047338]; nucleotide-sugar biosynthetic process [GO:0009226]; pollen development [GO:0009555]; response to cadmium ion [GO:0046686]; UDP-D-galactose metabolic process [GO:0052573]; UDP-glucose metabolic process [GO:0006011]; UDP-glucuronate metabolic process [GO:0046398]; UDP-L-arabinose metabolic process [GO:0033356] DEVELOPMENTAL STAGE: Expressed during pollen development, peaking at the tricellular stage. {ECO:0000269|PubMed:16757173}. TISSUE SPECIFICITY: Ubiquitous, but most abundant in rosette leaves, inflorescences, stems, stamens and pollen. {ECO:0000269|PubMed:16757173}. locus:2149574; AT5G52560 May function as the terminal enzyme of the myo-inositol oxidation (MIO) pathway. May also play a role in the salvage pathway for synthesis of nucleotide sugars UDP-sugar pyrophosphorylase (EC 2.7.7.64) Q5Z8Y4 USP_ORYSJ USP Os06g0701200 LOC_Os06g48760 OsJ_021664 P0596H10.4 FUNCTION: May function as the terminal enzyme of the myo-inositol oxidation (MIO) pathway. May also play a role in the salvage pathway for synthesis of nucleotide sugars (By similarity). {ECO:0000250}. ENOG411DYCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACT domain Os02g0120100 protein (Putative serine/threonine protein kinase) (cDNA clone:J033136N12, full insert sequence),Os02g0120100 protein (Fragment) Q6YUS6,A0A0P0VE17 Q6YUS6_ORYSJ,A0A0P0VE17_ORYSJ Os02g0120100 OJ1020_C02.2 OSJNBb0088N06.11 OSNPB_020120100,Os02g0120100 OSNPB_020120100 ENOG411DYCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os07g0503600 protein (Fragment) Q6Z473,A0A0P0X615 Q6Z473_ORYSJ,A0A0P0X615_ORYSJ Os07g0503900 Os07g0503900 OSNPB_070503900 P0430F03.34,Os07g0503600 OSNPB_070503600 ENOG411DYCX PEX10 Q9SYU4,A0A1P8AYA6,A0A1P8AY59,A0A1P8AYB2 PEX10_ARATH,A0A1P8AYA6_ARATH,A0A1P8AY59_ARATH,A0A1P8AYB2_ARATH Peroxisome biogenesis factor 10 (PER10) (Peroxin-10) (Peroxisomal biogenesis factor 10) (AtPEX10) (AthPEX10) (Peroxisome assembly protein 10) (Pex10p),Peroxin 10 DISRUPTION PHENOTYPE: Embryo lethality at the heart stage. {ECO:0000269|PubMed:12883010, ECO:0000269|PubMed:14576288, ECO:0000269|PubMed:17215364}. Embryo defective; Transition-C. Gietl; A. Baker-2004 FUNCTION: Involved in the formation of peroxisomes, lipid bodies and protein bodies. Required for normal-shaped peroxisomes that can physically associate with the outer membrane of the chloroplast envelope. Not involved in beta-oxidation and glyoxylate cycle. Acts as an E3 ubiquitin-protein ligase. {ECO:0000269|PubMed:12883010, ECO:0000269|PubMed:14576288, ECO:0000269|PubMed:17215364, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:20679226, ECO:0000269|PubMed:23336935}. MISCELLANEOUS: Travels directly from the cytosol to the peroxisomes. R-ATH-8866654; 42614,36461,36343,34739 Peroxisome biogenesis factor 10 (PER10) (Peroxin-10) (Peroxisomal biogenesis factor 10) (AtPEX10) (AthPEX10) (Peroxisome assembly protein 10) (Pex10p),Peroxin 10 cytosol [GO:0005829]; integral component of peroxisomal membrane [GO:0005779]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; embryo development ending in seed dormancy [GO:0009793]; fatty acid beta-oxidation [GO:0006635]; peroxisome organization [GO:0007031]; peroxisome-chloroplast membrane tethering [GO:0010381]; photorespiration [GO:0009853]; protein import into peroxisome matrix [GO:0016558]; protein monoubiquitination [GO:0006513],integral component of peroxisomal membrane [GO:0005779]; zinc ion binding [GO:0008270]; protein import into peroxisome matrix [GO:0016558] DEVELOPMENTAL STAGE: Increased expression in early post-germinative growth. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:14576288}. locus:2057780; AT2G26350 Peroxisome biogenesis factor Os07g0608800 protein (Putative Peroxisome assembly protein 10),Os07g0608900 protein (Fragment) Q6YTX9,A0A0P0X8Z2 Q6YTX9_ORYSJ,A0A0P0X8Z2_ORYSJ Os07g0608800 OsJ_25076 OSJNBb0018L13.8 OSNPB_070608800,Os07g0608900 OSNPB_070608900 ENOG411DYCY Q9FGU9,Q9ZW32 Q9FGU9_ARATH,Q9ZW32_ARATH Gb|AAC95187.1 (Hepatocyte growth factor activator, putative (DUF3527)) (Uncharacterized protein At5g59020),At2g29510 (Uncharacterized protein At2g29510) 86362,93318 Gb|AAC95187.1 (Hepatocyte growth factor activator, putative (DUF3527)) (Uncharacterized protein At5g59020),At2g29510 (Uncharacterized protein At2g29510) plasmodesma [GO:0009506] locus:2154553;,locus:2042972; AT5G59020,AT2G29510 Domain of unknown function (DUF3527) Expressed protein (Os03g0267600 protein) (cDNA clone:J023142F14, full insert sequence) Q10NJ8 Q10NJ8_ORYSJ Os03g0267600 LOC_Os03g16070 Os03g0267600 OSNPB_030267600 ENOG411DYCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0481700 protein A0A0P0WNV5 A0A0P0WNV5_ORYSJ Os05g0481700 OSNPB_050481700 ENOG411DYC3 RPL7C,RPL7B,RPL7D P60039,P60040,Q9LHP1,A8MRH4,F4IT48 RL73_ARATH,RL72_ARATH,RL74_ARATH,A8MRH4_ARATH,F4IT48_ARATH 60S ribosomal protein L7-3,60S ribosomal protein L7-2,60S ribosomal protein L7-4,AT2G01250 protein (Ribosomal protein L30/L7 family protein),Ribosomal protein L30/L7 family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 27940,28171,28433,21553,28520 60S ribosomal protein L7-3,60S ribosomal protein L7-2,60S ribosomal protein L7-4,AT2G01250 protein (Ribosomal protein L30/L7 family protein),Ribosomal protein L30/L7 family protein cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],chloroplast [GO:0009507]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],ribosome [GO:0005840],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255] locus:2038741;,locus:2086809;,locus:2051874; AT2G44120,AT2G01250,AT3G13580 60S ribosomal protein Os08g0234000 protein (Putative 60S ribosomal protein L7) (cDNA clone:J033112B19, full insert sequence),Os04g0605900 protein (cDNA clone:J033044G24, full insert sequence),Os08g0234000 protein Q6YYR2,Q0JAC6,A0A0P0XDJ9 Q6YYR2_ORYSJ,Q0JAC6_ORYSJ,A0A0P0XDJ9_ORYSJ Os08g0234000 B1047A05.37 OSNPB_080234000,Os04g0605900 Os04g0605900 OsJ_16070 OSNPB_040605900,Os08g0234000 OSNPB_080234000 ENOG411DYC5 PCMP-H12,OTP82 Q9LN01,A0A1P8ARF0 PPR21_ARATH,A0A1P8ARF0_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 82),Tetratricopeptide repeat (TPR)-like superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19845878}. FUNCTION: Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 9 of ndhB (ndhB-9) and site 1 of ndhG (ndhG-1) transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Not essential for the activity of the NDH complex of the photosynthetic electron transport chain. {ECO:0000269|PubMed:19845878}. MISCELLANEOUS: The DYW motif is dispensable for editing activity in vivo. {ECO:0000269|PubMed:19845878}. 83512,71762 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 82),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425]; mRNA processing [GO:0006397],zinc ion binding [GO:0008270] locus:2205200; AT1G08070 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DYC6 GRXS16 Q8H7F6 GRS16_ARATH Bifunctional monothiol glutaredoxin-S16, chloroplastic (AtGrxS16) (Atypical GIY-YIG endonuclease) (EC 3.1.-.-) (CAX-interacting protein 2) (CAXIP1-like protein) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides (Probable). Participates probably to the maturation of iron-sulfur proteins and to the regulation of the redox state of the BOLA proteins (Probable). The GRXS16-BOLA1 heterodimer binds a labile, oxygen sensitive iron-sulfur cluster (PubMed:24714563). Able to cleave linearized DNA in vitro (PubMed:23690600). {ECO:0000269|PubMed:23690600, ECO:0000269|PubMed:24714563, ECO:0000305}. 3.1.-.- 32206 Bifunctional monothiol glutaredoxin-S16, chloroplastic (AtGrxS16) (Atypical GIY-YIG endonuclease) (EC 3.1.-.-) (CAX-interacting protein 2) (CAXIP1-like protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cation transport [GO:0006812]; cell redox homeostasis [GO:0045454] locus:2042887; AT2G38270 2 iron 2 sulfur cluster binding Monothiol glutaredoxin-S12, chloroplastic Q2QX01 GRS12_ORYSJ GRXS12 Os12g0175500 LOC_Os12g07650 OsJ_35400 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411DYC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin NA NA NA NA NA NA NA ENOG411E2Z3 MCA23.26 Q9FII9 Q9FII9_ARATH Emb|CAB67623.1 (Transcription elongation factor) (Uncharacterized protein At5g47920/MCA23_26) 21519 Emb|CAB67623.1 (Transcription elongation factor) (Uncharacterized protein At5g47920/MCA23_26) translation elongation factor activity [GO:0003746] locus:2160932; AT5G47920 NA OSJNBa0072D21.11 protein (Os04g0382400 protein) Q7XVC1 Q7XVC1_ORYSJ Os04g0382400 OsJ_14534 OSJNBa0072D21.11 OSNPB_040382400 ENOG411E2Z7 Q9FHC1 Q9FHC1_ARATH PAR1 protein (Photoassimilate-responsive protein PAR-like protein) (Putative photoassimilate-responsive protein PAR) 21156 PAR1 protein (Photoassimilate-responsive protein PAR-like protein) (Putative photoassimilate-responsive protein PAR) locus:2156657; AT5G52390 PAR1 protein NA NA NA NA NA NA NA ENOG411E2ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 OJ000126_13.10 protein (Os04g0413900 protein) Q7XVJ5 Q7XVJ5_ORYSJ OJ000126_13.10 Os04g0413900 OsJ_14742 OSNPB_040413900 ENOG411E2ZF F26K24.10 Q9SF17,Q9ZQ69 Q9SF17_ARATH,Q9ZQ69_ARATH F26K24.10 protein (Transmembrane protein),Transmembrane protein (Uncharacterized protein At2g03330) 38249,43522 F26K24.10 protein (Transmembrane protein),Transmembrane protein (Uncharacterized protein At2g03330) integral component of membrane [GO:0016021] locus:2081466;,locus:2063846; AT3G11810,AT2G03330 NA Expressed protein (Os12g0257500 protein) (cDNA clone:001-205-H11, full insert sequence) (cDNA clone:001-207-C10, full insert sequence) Q2QUP8 Q2QUP8_ORYSJ LOC_Os12g15520 Os12g0257500 OSNPB_120257500 ENOG411E2ZE Q29Q74 Q29Q74_ARATH At2g33855 (Transmembrane protein) 17037 At2g33855 (Transmembrane protein) integral component of membrane [GO:0016021] locus:504955963; AT2G33855 NA OSJNBa0022H21.9 protein (Os04g0475300 protein) (cDNA clone:J013064P15, full insert sequence) Q7XKU8 Q7XKU8_ORYSJ Os04g0475300 OsJ_15172 OSJNBa0022H21.9 OSNPB_040475300 ENOG411EBNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E65Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0523300 protein Q0DBV7 Q0DBV7_ORYSJ Os06g0523300 Os06g0523300 OSNPB_060523300 ENOG411EF1S Q9LHA0 Q9LHA0_ARATH Uncharacterized protein At3g28750/T19N8_4 35479 Uncharacterized protein At3g28750/T19N8_4 locus:2098433; AT3G28750 NA NA NA NA NA NA NA NA ENOG411EF1P BHLH118 Q9STJ7,A0A1P8B7L4 BH118_ARATH,A0A1P8B7L4_ARATH Transcription factor bHLH118 (Basic helix-loop-helix protein 118) (AtbHLH118) (bHLH 118) (Transcription factor EN 5) (bHLH transcription factor bHLH118),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 18695,21775 Transcription factor bHLH118 (Basic helix-loop-helix protein 118) (AtbHLH118) (bHLH 118) (Transcription factor EN 5) (bHLH transcription factor bHLH118),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2138019; AT4G25400 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EF1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EF1K LSM1B Q8LFL8,A0A178VDM0,A0A1I9LP34 LSM1B_ARATH,A0A178VDM0_ARATH,A0A1I9LP34_ARATH Sm-like protein LSM1B (AtLSM1b),Small nuclear ribonucleoprotein family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants lsm1a and lsm1b show severe developmental alterations, such as delayed seed germination, reduced root length, epinastic, chlorotic and small cotyledons, small and serrated leaves, abnormal venation in cotyledons and leaves, dwarf plants with early flowering, short siliques with reduced seed number and small morphologically alterated seeds. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. FUNCTION: Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. LSM1A and LSM1B are essential for the formation of the cytoplasmic LSM1-LSM7 complex which regulates developmental gene expression by the decapping of specific development-related transcripts (PubMed:23221597, PubMed:23620288). Required for P-body formation during heat stress (PubMed:23221597). {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-430039; 14693,13401,11009 Sm-like protein LSM1B (AtLSM1b),Small nuclear ribonucleoprotein family protein Lsm1-7-Pat1 complex [GO:1990726]; mRNA cap binding complex [GO:0005845]; P-body [GO:0000932]; RNA binding [GO:0003723]; RNA cap binding [GO:0000339]; cold acclimation [GO:0009631]; deadenylation-dependent decapping of nuclear-transcribed mRNA [GO:0000290]; hyperosmotic salinity response [GO:0042538]; mRNA processing [GO:0006397]; response to water deprivation [GO:0009414]; RNA metabolic process [GO:0016070],intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]; nuclear-transcribed mRNA catabolic process [GO:0000956] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2087522; AT3G14080 Sm NA NA NA NA NA NA NA ENOG411EF1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411ECHF F1P2.210 Q9SN72,A0A1I9LLL7,A0A1I9LLL4,A0A1I9LLL5,A0A1I9LLL3,F4JCN3 Q9SN72_ARATH,A0A1I9LLL7_ARATH,A0A1I9LLL4_ARATH,A0A1I9LLL5_ARATH,A0A1I9LLL3_ARATH,F4JCN3_ARATH Regulator of chromosome condensation (RCC1) family protein (Uncharacterized protein F1P2.210),Regulator of chromosome condensation (RCC1) family protein 103749,104080,95019,108578,87263,104201 Regulator of chromosome condensation (RCC1) family protein (Uncharacterized protein F1P2.210),Regulator of chromosome condensation (RCC1) family protein metal ion binding [GO:0046872],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872] locus:2079147; AT3G47660 FYVE NA NA NA NA NA NA NA ENOG411ECHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbohydrate binding domain (family 25) NA NA NA NA NA NA NA ENOG411ECHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ECHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411ECHN RIE1 Q8GUU2,A0A1P8B2L5 RIE1_ARATH,A0A1P8B2L5_ARATH E3 ubiquitin protein ligase RIE1 (EC 2.3.2.27) (Protein RING-FINGER FOR EMBRYOGENESIS 1) (RING-type E3 ubiquitin transferase RIE1),RING-finger protein for embryogenesi DISRUPTION PHENOTYPE: Embryo-lethal phenotype. Embryo development arrested between globular and torpedo stages. {ECO:0000269|PubMed:14756305}. Embryo defective; Cotyledon-Q. Li-2004 FUNCTION: Probable E3 ubiquitin-protein ligase required for embryo development. {ECO:0000269|PubMed:14756305}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 40098,28450 E3 ubiquitin protein ligase RIE1 (EC 2.3.2.27) (Protein RING-FINGER FOR EMBRYOGENESIS 1) (RING-type E3 ubiquitin transferase RIE1),RING-finger protein for embryogenesi integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; embryo development ending in seed dormancy [GO:0009793]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:14756305}. locus:1005452975; AT2G01735 RING-finger protein for embryogenesis NA NA NA NA NA NA NA ENOG411ECHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Aquaporin SIP1-1 (OsSIP1;1) (Small basic intrinsic protein 1-1),Os01g0182200 protein Q5VR89,A0A0P0UZ45 SIP11_ORYSJ,A0A0P0UZ45_ORYSJ SIP1-1 Os01g0182200 LOC_Os01g08660 OsJ_000627 P0666G04.23-1 P0666G04.23-2,Os01g0182200 OSNPB_010182200 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411ECHK T25B15_100 Q9FT49,A0A1I9LNE3,F4J6Y4 Q9FT49_ARATH,A0A1I9LNE3_ARATH,F4J6Y4_ARATH F-box associated ubiquitination effector family protein (Uncharacterized protein T25B15_100),F-box associated ubiquitination effector family protein 34863,24694,24888 F-box associated ubiquitination effector family protein (Uncharacterized protein T25B15_100),F-box associated ubiquitination effector family protein locus:2100534;,locus:2079934; AT3G52330,AT3G52510 F-box associated domain NA NA NA NA NA NA NA ENOG411ECHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phenylalanine ammonia-lyase Phenylalanine ammonia-lyase (EC 4.3.1.24) Q53NW6,A0A0P0YAL3 Q53NW6_ORYSJ,A0A0P0YAL3_ORYSJ LOC_Os11g48110 Os11g0708900 OSNPB_110708900,Os12g0520200 OSNPB_120520200 ENOG411ECHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411ECHR MAF19.12 A0A1P8BG73,A0A1P8BG63,F4K200 A0A1P8BG73_ARATH,A0A1P8BG63_ARATH,F4K200_ARATH Zinc ion-binding protein 47256,41664,47954 Zinc ion-binding protein locus:2159421; AT5G61120 Inherit from euNOG: Nucleic acid binding NA NA NA NA NA NA NA ENOG411ECHS MTE17.24 Q9SU98,F4K4W1,F4K4W0 Q9SU98_ARATH,F4K4W1_ARATH,F4K4W0_ARATH At4g26660 (Kinesin-like protein) (Uncharacterized protein AT4g26660),Kinesin-like protein 90449,91314,90857 At4g26660 (Kinesin-like protein) (Uncharacterized protein AT4g26660),Kinesin-like protein kinesin complex [GO:0005871]; ATPase activity [GO:0016887]; microtubule motor activity [GO:0003777]; microtubule depolymerization [GO:0007019]; microtubule-based movement [GO:0007018]; mitotic sister chromatid segregation [GO:0000070],kinesin complex [GO:0005871]; ATPase activity [GO:0016887]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2133872;,locus:2173922; AT4G26660,AT5G55520 Kinesin-related NA NA NA NA NA NA NA ENOG411ECH4 DMP5,DMP3 Q9M897,Q9STW3 DMP5_ARATH,DMP3_ARATH Protein DMP5 (AtDMP5),Protein DMP3 (AtDMP3) FUNCTION: Involved in membrane remodeling. {ECO:0000250|UniProtKB:Q9LVF4}. 24070,23207 Protein DMP5 (AtDMP5),Protein DMP3 (AtDMP3) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; endomembrane system organization [GO:0010256],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; endomembrane system organization [GO:0010256]; plant organ senescence [GO:0090693] DEVELOPMENTAL STAGE: Accumulates in tissues undergoing senescence. {ECO:0000269|PubMed:20712629}. TISSUE SPECIFICITY: Expressed in leaves, siliques and roots (e.g. root hairs). {ECO:0000269|PubMed:20712629}. locus:2076894;,locus:2135952; AT3G02430,AT4G24310 Protein of unknown function (DUF679) NA NA NA NA NA NA NA ENOG411ECH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECH6 F4IBF0,P0DI15,Q3ECM4,Q3EAQ9,Q9C653,Q9FYD3,A0A1P8ATM9 GDL26_ARATH,GDL27_ARATH,GDL25_ARATH,GDL55_ARATH,GDL24_ARATH,GDL56_ARATH,A0A1P8ATM9_ARATH GDSL esterase/lipase At1g59030 (EC 3.1.1.-) (Extracellular lipase At1g59030),GDSL esterase/lipase At1g59406 (EC 3.1.1.-) (Extracellular lipase At1g59406),GDSL esterase/lipase At1g58725 (EC 3.1.1.-) (Extracellular lipase At1g58725),GDSL esterase/lipase At3g43550 (EC 3.1.1.-) (Extracellular lipase At3g43550),GDSL esterase/lipase At1g58525 (EC 3.1.1.-) (Extracellular lipase At1g58525),GDSL esterase/lipase At3g43570 (EC 3.1.1.-) (Extracellular lipase At3g43570),GDSL-like lipase/acylhydrolase superfamily protein ARA:GQT-83-MONOMER;,ARA:AT3G43550-MONOMER;,ARA:GQT-311-MONOMER; 3.1.1.- 38858,32179,38839,35761,38106 GDSL esterase/lipase At1g59030 (EC 3.1.1.-) (Extracellular lipase At1g59030),GDSL esterase/lipase At1g59406 (EC 3.1.1.-) (Extracellular lipase At1g59406),GDSL esterase/lipase At1g58725 (EC 3.1.1.-) (Extracellular lipase At1g58725),GDSL esterase/lipase At3g43550 (EC 3.1.1.-) (Extracellular lipase At3g43550),GDSL esterase/lipase At1g58525 (EC 3.1.1.-) (Extracellular lipase At1g58525),GDSL esterase/lipase At3g43570 (EC 3.1.1.-) (Extracellular lipase At3g43570),GDSL-like lipase/acylhydrolase superfamily protein extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042],lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] locus:2827016;,locus:2826998;,locus:504956180;,locus:2098209;,locus:2079849; AT1G59030,AT1G59406,AT1G58725,AT3G43550,AT1G58525,AT3G43570 GDSL-motif lipase NA NA NA NA NA NA NA ENOG411ECH7 HRS1 Q9FX67 HRS1_ARATH Transcription factor HRS1 (MYB-domain transcription factor HRS1) (NIGT1 protein homolog) (AtNIGT1) (Protein HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19341407}. FUNCTION: Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}. MISCELLANEOUS: Plants over-expressing display increased susceptibility in primary root shortening under low phosphate conditions. {ECO:0000269|PubMed:19341407}. 39057 Transcription factor HRS1 (MYB-domain transcription factor HRS1) (NIGT1 protein homolog) (AtNIGT1) (Protein HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to nitrogen compound [GO:1901699]; cellular response to phosphate starvation [GO:0016036]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; primary root development [GO:0080022]; regulation of response to nutrient levels [GO:0032107]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the root hair region and root hair cells. {ECO:0000269|PubMed:19341407}. locus:2205339; AT1G13300 Transcription factor NA NA NA NA NA NA NA ENOG411ECH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tex-like protein N-terminal domain NA NA NA NA NA NA NA ENOG411ECH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA von Willebrand factor type A domain NA NA NA NA NA NA NA ENOG411ECH2 APRR6 Q9C9F6 APRR6_ARATH Putative two-component response regulator-like APRR6 (Pseudo-response regulator 6) 86182 Putative two-component response regulator-like APRR6 (Pseudo-response regulator 6) nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2199342; AT1G68210 REC NA NA NA NA NA NA NA ENOG411ECH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LvsC-like (Os06g0678700 protein),Os02g0162766 protein Q655H7,A0A0P0VF40 Q655H7_ORYSJ,A0A0P0VF40_ORYSJ Os06g0678700 OSNPB_060678700 P0710B08.41,Os02g0162766 OSNPB_020162766 ENOG411ECH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nitric oxide synthase oxygenase domain NA NA NA NA NA NA NA ENOG411EMGW ALA12,ALA9 P57792,Q9SX33,F4IE35,A0A1P8ANQ4 ALA12_ARATH,ALA9_ARATH,F4IE35_ARATH,A0A1P8ANQ4_ARATH Probable phospholipid-transporting ATPase 12 (AtALA12) (EC 3.6.3.1) (Aminophospholipid flippase 12),Putative phospholipid-transporting ATPase 9 (AtALA9) (EC 3.6.3.1) (Aminophospholipid flippase 9),Phospholipid-transporting ATPase (EC 3.6.3.1) FUNCTION: Involved in transport of phospholipids. {ECO:0000305|PubMed:11402198}. ARA:AT1G26130-MONOMER;,ARA:AT1G68710-MONOMER; R-ATH-6798695;R-ATH-936837; 3.6.3.1 133793,136045,133864,138943 Probable phospholipid-transporting ATPase 12 (AtALA12) (EC 3.6.3.1) (Aminophospholipid flippase 12),Putative phospholipid-transporting ATPase 9 (AtALA9) (EC 3.6.3.1) (Aminophospholipid flippase 9),Phospholipid-transporting ATPase (EC 3.6.3.1) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012]; Golgi vesicle budding [GO:0048194],chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012] locus:2026900;,locus:2011420; AT1G26130,AT1G68710 E1-E2 ATPase NA NA NA NA NA NA NA ENOG411E1NE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Hexose transporter, putative, expressed (Os11g0475600 protein) (cDNA, clone: J023003B03, full insert sequence),Os02g0832100 protein (Fragment) Q2R4G0,A0A0P0VRT7 Q2R4G0_ORYSJ,A0A0P0VRT7_ORYSJ Os11g0475600 LOC_Os11g28610 Os11g0475600 OsJ_33873 OSNPB_110475600,Os02g0832100 OSNPB_020832100 ENOG411E1K7 EMB1444 Q56X05 PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06143 (Protein EMBRYO DEFECTIVE 1444) 65069 Pentatricopeptide repeat-containing protein At1g06143 (Protein EMBRYO DEFECTIVE 1444) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; RNA modification [GO:0009451] locus:2198776; AT1G06143 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DWYH Q9FF61 SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 (SMARCA3-like protein 1) (EC 3.6.4.-) FUNCTION: Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for transcriptional activation or repression of specific target promoters (By similarity). {ECO:0000250}. 3.6.4.- 98616 Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 (SMARCA3-like protein 1) (EC 3.6.4.-) nucleus [GO:0005634]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; covalent chromatin modification [GO:0016569]; transcription, DNA-templated [GO:0006351] AT5G05130 SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like Os07g0642400 protein A0A0P0X9K4 A0A0P0X9K4_ORYSJ Os07g0642400 OSNPB_070642400 ENOG411DWYI ATLP-1 P50699,Q9C9U9,F4IAP1 TLPH_ARATH,Q9C9U9_ARATH,F4IAP1_ARATH Thaumatin-like protein,Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein; 9376-10898),Pathogenesis-related thaumatin superfamily protein 25907,28213,25978 Thaumatin-like protein,Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein; 9376-10898),Pathogenesis-related thaumatin superfamily protein membrane [GO:0016020]; plasmodesma [GO:0009506] locus:2027864;,locus:2194344; AT1G18250,AT1G73620 thaumatin-like Os06g0691200 protein (Putative thaumatin-protein) (cDNA clone:002-140-C02, full insert sequence) Q654Y4 Q654Y4_ORYSJ Os06g0691200 Os06g0691200 OSNPB_060691200 P0532H03.12 P0661G04.45 ENOG411DWYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0572600 protein Q6YXC6 Q6YXC6_ORYSJ Os02g0572600 Os02g0572600 OSJNBb0046L23.3 OSNPB_020572600 ENOG411DWYK Q9C5A9,P83483,P83484 ATPBO_ARATH,ATPBM_ARATH,ATPBN_ARATH ATP synthase subunit beta-3, mitochondrial (EC 3.6.3.14),ATP synthase subunit beta-1, mitochondrial (EC 3.6.3.14),ATP synthase subunit beta-2, mitochondrial (EC 3.6.3.14) FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. ARA:AT5G08680-MONOMER;,ARA:AT5G08670-MONOMER;,ARA:AT5G08690-MONOMER; 3.6.3.14 59859,59671,59713 ATP synthase subunit beta-3, mitochondrial (EC 3.6.3.14),ATP synthase subunit beta-1, mitochondrial (EC 3.6.3.14),ATP synthase subunit beta-2, mitochondrial (EC 3.6.3.14) membrane [GO:0016020]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) [GO:0000275]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986]; response to cadmium ion [GO:0046686],mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) [GO:0000275]; ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986],chloroplast envelope [GO:0009941]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) [GO:0000275]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; poly(U) RNA binding [GO:0008266]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986] locus:504956338;,locus:505006590; AT5G08680,AT5G08670,AT5G08690 Produces ATP from ADP in the presence of a proton gradient across the membrane (By similarity) ATP synthase subunit beta, mitochondrial (EC 3.6.3.14),ATP synthase subunit beta (EC 3.6.3.14),ATP synthase subunit beta (EC 3.6.3.14) (Fragment),Os05g0553000 protein (Fragment) Q01859,Q0JKB4,A0A0P0V6Q2,A0A0P0WQ12 ATPBM_ORYSJ,Q0JKB4_ORYSJ,A0A0P0V6Q2_ORYSJ,A0A0P0WQ12_ORYSJ ATPB Os05g0553000 LOC_Os05g47980 OJ1263_E10.1 OSJNBa0079H23.20,Os01g0685800 Os01g0685800 OSNPB_010685800,Os01g0685800 OSNPB_010685800,Os05g0553000 OSNPB_050553000 FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.,FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. {ECO:0000256|RuleBase:RU003553}. ENOG411DWYA DET1 P48732 DET1_ARATH Light-mediated development protein DET1 (Protein DEETIOLATED 1) Dwarf; Red cotyledons and lower leaf surfaces; Green roots; Dark-grown seedlings are de-etiolated-J. Chory-1994 FUNCTION: Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes (E2s). Involved in repression of deetiolation in the developing seedling. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5, HYH and LAF1. Involved in the repression of blue light responsive promoter in chloroplasts. May be required to stabilize the CDD complex. Its association with histone tail suggests a role in remodeling of chromatin. {ECO:0000269|PubMed:15342494, ECO:0000269|PubMed:9681024}. 62492 Light-mediated development protein DET1 (Protein DEETIOLATED 1) nucleus [GO:0005634]; catalytic activity [GO:0003824]; DNA repair [GO:0006281]; red, far-red light phototransduction [GO:0009585] locus:2005505; AT4G10180 Light-mediated development protein Os01g0104600 protein (Putative tDET1 protein) (cDNA clone:001-019-A06, full insert sequence) (cDNA clone:J023107M18, full insert sequence) Q658D0 Q658D0_ORYSJ Os01g0104600 Os01g0104600 OSNPB_010104600 P0436E04.25 ENOG411DWYB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os11g0578700 protein (Fragment),Os11g0579600 protein (Fragment),Os11g0574500 protein,Os11g0598000 protein (Fragment) Q0IS09,Q0IS04,A0A0P0Y3K1,A0A0N7KT62 Q0IS09_ORYSJ,Q0IS04_ORYSJ,A0A0P0Y3K1_ORYSJ,A0A0N7KT62_ORYSJ Os11g0578700 OSNPB_110578700,Os11g0579600 OSNPB_110579600,Os11g0574500 OSNPB_110574500,Os11g0598000 OSNPB_110598000 ENOG411DWYC Q9LTK2 Q9LTK2_ARATH Dbj|BAA83359.1 (Transmembrane protein 161AB protein) (Uncharacterized protein At5g52180) 51114 Dbj|BAA83359.1 (Transmembrane protein 161AB protein) (Uncharacterized protein At5g52180) integral component of membrane [GO:0016021] locus:2145126; AT5G52180 NA Os06g0129000 protein Q658H9 Q658H9_ORYSJ P0538C01.11 Os06g0129000 OSNPB_060129000 ENOG411DWYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain Os02g0199800 protein (Putative C2 domain-containing protein) (cDNA clone:J023144C18, full insert sequence) Q6Z7A3 Q6Z7A3_ORYSJ Os02g0199800 Os02g0199800 OSNPB_020199800 P0026H03.34 P0419A09.5 ENOG411DWYE MAP65-3 Q9FHM4 MA653_ARATH 65-kDa microtubule-associated protein 3 (AtMAP65-3) (Protein PLEIADE) DISRUPTION PHENOTYPE: Irregular root expansion. Defects in karyokinesis and cytokinesis. Cytokinesis defects before the embryo dermatogen stage and in roots. Embryos with enlarged nuclei, often containing multiple nucleoli. Some abnormal stomata with pores attached to a single side of the mother cell. Long root hairs. In roots, multinucleated cells, cell wall stubs, and synchronized cell divisions in incompletely separated cells. Normal anaphase spindle, but distorted phragmoplast. Abnormal formation of nematode-mediated giant cells leading to impaired maturation of nematode larvae. {ECO:0000269|PubMed:12068111, ECO:0000269|PubMed:12226511, ECO:0000269|PubMed:15028217}. Dwarf. Fertile but had 25% fewer seeds per silique than normal. Sections through the dyc283 mutant root revealed polynucleate hypertrophied cortical and epidermal cells (n= 41). Hypocotyl and leaf primordia had polynucleate cells and aberrant cell wall stubs. In some dyc283 mutant cells the nucleus did not divide and curved around the branched end of the cell wall stub. Abnormally large nuclei with additional nucleoli. In a subset of dyc283 mutant premitotic cells MTs were mixed with condensed chromosomes during prometaphase. Some dyc283 dividing cells had MT spindle defects. Phragmoplasts were often misplaced or wavy. Incomplete nematode development due to a defect in giant cell formation in the dyc283 mutant. Short, wavy roots with abnormal architecture; Increased lateral root number-M. Hausser-2002 FUNCTION: Microtubule-associated protein that plays a critical role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs. Essential for the cytokinesis, especially in roots, by maintaining the integrity of the overlapped microtubules in the phragmoplast. Required during root morphogenesis. Needed for giant cell development during root knot nematode infection, where cytokinesis is initiated but not completed. {ECO:0000269|PubMed:12068111, ECO:0000269|PubMed:12226511, ECO:0000269|PubMed:15028217, ECO:0000269|PubMed:18263774}. 80302 65-kDa microtubule-associated protein 3 (AtMAP65-3) (Protein PLEIADE) cortical microtubule [GO:0055028]; microtubule [GO:0005874]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; preprophase band [GO:0009574]; microtubule binding [GO:0008017]; cytokinesis by cell plate formation [GO:0000911]; formation by symbiont of syncytium involving giant cell for nutrient acquisition from host [GO:0052096]; microtubule cytoskeleton organization [GO:0000226]; microtubule polymerization [GO:0046785]; nuclear division [GO:0000280]; response to nematode [GO:0009624] DEVELOPMENTAL STAGE: Present in dividing tissues during all stages of embryonic development. {ECO:0000269|PubMed:18263774}. TISSUE SPECIFICITY: Expressed in all tissues enriched in dividing cells, such as the root and shoot apical meristem, foliar primordia, and young leaves, and embryos. {ECO:0000269|PubMed:18263774}. locus:2153152; AT5G51600 microtubule-associated protein Microtubule-associated protein-like (Os01g0685900 protein) (cDNA clone:001-125-A09, full insert sequence),Os05g0536600 protein Q5N7P7,A0A0P0WQ00 Q5N7P7_ORYSJ,A0A0P0WQ00_ORYSJ P0478H03.31-1 Os01g0685900 OsJ_03043 OSNPB_010685900,Os05g0536600 OSNPB_050536600 ENOG411DWYF P93820 Y1439_ARATH BTB/POZ domain-containing protein At1g04390 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 112373 BTB/POZ domain-containing protein At1g04390 protein ubiquitination [GO:0016567] locus:2018264; AT1G04390 BTB POZ domain-containing protein Os06g0674800 protein A0A0P0X000 A0A0P0X000_ORYSJ Os06g0674800 OSNPB_060674800 ENOG411DWYG Q8GXG9,F4HPK3 Q8GXG9_ARATH,F4HPK3_ARATH Uncharacterized protein At1g44835 (Uncharacterized protein At1g44835/T12C22.11) (YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein),YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein 33711,33810 Uncharacterized protein At1g44835 (Uncharacterized protein At1g44835/T12C22.11) (YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein),YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein aminoacyl-tRNA editing activity [GO:0002161]; aminoacyl-tRNA ligase activity [GO:0004812],cytosol [GO:0005829]; aminoacyl-tRNA editing activity [GO:0002161]; aminoacyl-tRNA ligase activity [GO:0004812] locus:2826697; AT1G44835 prolyl-tRNA synthetase associated domain-containing protein 1-like Os02g0767700 protein (YbaK/prolyl-tRNA synthetase protein-like) (cDNA clone:J023086E09, full insert sequence) Q6Z302 Q6Z302_ORYSJ Os02g0767700 Os02g0767700 OJ1004_A11.31 OJ1767_D02.2 OSNPB_020767700 ENOG411DWYX MRA19.9 Q9FK73 Q9FK73_ARATH Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 31510 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein phosphoprotein phosphatase activity [GO:0004721] locus:2171978; AT5G45700 CPDc Os05g0205100 protein (cDNA clone:002-181-E05, full insert sequence) Q5W6J1 Q5W6J1_ORYSJ Os05g0205100 OSJNBb0115F21.3 OSNPB_050205100 ENOG411DWYY F4I045 F4I045_ARATH C3HC zinc finger-like protein 65233 C3HC zinc finger-like protein nucleus [GO:0005634]; zinc ion binding [GO:0008270] locus:2028386; AT1G48950 zinc ion binding protein Os01g0605650 protein (Fragment) A0A0P0V517 A0A0P0V517_ORYSJ Os01g0605650 OSNPB_010605650 ENOG411DWYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Os01g0207600 protein (Fragment) A0A0P0UZZ3 A0A0P0UZZ3_ORYSJ Os01g0207600 OSNPB_010207600 ENOG411DWYP OMT1 Q9FK25 OMT1_ARATH Flavone 3'-O-methyltransferase 1 (AtOMT1) (EC 2.1.1.42) (Acetylserotonin O-methyltransferase OMT1) (EC 2.1.1.4) (Caffeate O-methyltransferase 1) (EC 2.1.1.68) (Quercetin 3'-O-methyltransferase 1) DISRUPTION PHENOTYPE: Reduced levels of syringyl (S) units in lignins that contain more 5-hydroxyguaiacyl units (5-OH-G), the precursors of S-units. Substitution of sinapyl (S) alcohol-derived substructures by 5-hydroxyconiferyl alcohol (5OHG)-derived moieties in fiber cell walls. No effect on hydroxycinnamic acid amides in pollen. {ECO:0000269|PubMed:12777055, ECO:0000269|PubMed:20652169, ECO:0000269|PubMed:22258746}. Susceptible to fungal infection-H. Keller-2009 FUNCTION: Methylates OH residues of flavonoid compounds. Converts quercetin into isorhamnetin. Dihydroquercetin is not a substrate. Catalyzes the methylation of monolignols, the lignin precursors. Does not contribute to the phenylpropanoid pattern of the pollen tryphine, but is probably confined to isorhamnetin glycoside biosynthesis (PubMed:10700397, PubMed:12777055, PubMed:20652169, PubMed:22258746). Involved in melatonin biosynthesis. Can function as acetylserotonin O-methyltransferase. Catalyzes the transfer of a methyl group onto N-acetylserotonin, producing melatonin (N-acetyl-5-methoxytryptamine) (PubMed:25039887). {ECO:0000269|PubMed:10700397, ECO:0000269|PubMed:12777055, ECO:0000269|PubMed:20652169, ECO:0000269|PubMed:22258746, ECO:0000269|PubMed:25039887}. PATHWAY: Flavonoid metabolism; quercetin degradation.; PATHWAY: Aromatic compound metabolism; melatonin biosynthesis; melatonin from serotonin: step 1/2. {ECO:0000305}. R-ATH-209931; 2.1.1.42;2.1.1.76; 2.1.1.42; 2.1.1.4; 2.1.1.68 39618 Flavone 3'-O-methyltransferase 1 (AtOMT1) (EC 2.1.1.42) (Acetylserotonin O-methyltransferase OMT1) (EC 2.1.1.4) (Caffeate O-methyltransferase 1) (EC 2.1.1.68) (Quercetin 3'-O-methyltransferase 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; acetylserotonin O-methyltransferase activity [GO:0017096]; caffeate O-methyltransferase activity [GO:0047763]; luteolin O-methyltransferase activity [GO:0030744]; myricetin 3'-O-methyltransferase activity [GO:0033799]; protein dimerization activity [GO:0046983]; quercetin 3'-O-methyltransferase activity [GO:0102822]; quercetin 3-O-methyltransferase activity [GO:0030755]; flavonol biosynthetic process [GO:0051555]; lignin biosynthetic process [GO:0009809]; melatonin biosynthetic process [GO:0030187] DEVELOPMENTAL STAGE: Observed in young seedling and progressively restricted to vascular tissues. Present in whole blade of young leaves but confined to the vascular tissues of mature leaves. In stems, mostly present in xylem, mature phloem and differentiating fibers. In siliques, only present in the lignified extremities. Expressed during early and late stages of flower development. {ECO:0000269|PubMed:12777055, ECO:0000269|PubMed:22258746}. TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, flowers and siliques, mostly in vascular tissues. Mostly expressed in the apical part of the stems and in roots. Expressed in the endothecium and the epidermal anther, but not in the tapetum. Also detected in all epidermal tissues of flower organs, including petals, sepals and the tip of the stigma. {ECO:0000269|PubMed:12777055, ECO:0000269|PubMed:22258746}. locus:2153423; AT5G54160 caffeic acid Flavone 3'-O-methyltransferase 1 (OsOMT1) (EC 2.1.1.42) (Acetylserotonin O-methyltransferase COMT) (EC 2.1.1.4) (Caffeate O-methyltransferase 1) (OsCOMT1) (EC 2.1.1.68) (OsCOMT) (Quercetin 3'-O-methyltransferase 1),Os08g0157500 protein (Fragment) Q6ZD89,A0A0P0XC87 OMT1_ORYSJ,A0A0P0XC87_ORYSJ COMT ROMT-9 Os08g0157500 LOC_Os08g06100 OsJ_26105 P0438H08.29,Os08g0157500 OSNPB_080157500 FUNCTION: Methylates OH residues of flavonoid compounds. Can methylate eriodictyol, luteolin, quercetin and taxifolin (PubMed:16412485). Methylates caffeate to produce ferrulate (PubMed:21210840, Ref.16). Catalyzes the methylation of monolignols, the lignin precursors. Functions cooperatively with CAD2 in the culm internodes for the biosynthesis of monolignols. May be involved in lignin biosynthesis in leaves and roots (PubMed:21912859). Involved in syringyl lignin biosynthesis. Can function as 5-hydroxyconiferaldehyde O-methyltransferase in the biosynthetic pathway to syringyl lignin (Ref.16). Involved in melatonin biosynthesis. Can function as acetylserotonin O-methyltransferase. Catalyzes the transfer of a methyl group onto N-acetylserotonin, producing melatonin (N-acetyl-5-methoxytryptamine) (PubMed:26276868). {ECO:0000269|PubMed:16412485, ECO:0000269|PubMed:21210840, ECO:0000269|PubMed:21912859, ECO:0000269|PubMed:26276868, ECO:0000269|Ref.16}. ENOG411DWYQ RPL7A Q9SAI5 RL71_ARATH 60S ribosomal protein L7-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 28344 60S ribosomal protein L7-1 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; mature ribosome assembly [GO:0042256] locus:2025817; AT1G80750 60S ribosomal protein Os08g0542100 protein (Fragment),Os11g0298500 protein A0A0P0XJU9,A0A0N7KST0 A0A0P0XJU9_ORYSJ,A0A0N7KST0_ORYSJ Os08g0542100 OSNPB_080542100,Os11g0298500 OSNPB_110298500 ENOG411DWYR SEP3 O22456,F4I972 SEP3_ARATH,F4I972_ARATH Developmental protein SEPALLATA 3 (Agamous-like MADS-box protein AGL9),K-box region and MADS-box transcription factor family protein DISRUPTION PHENOTYPE: Triple mutations in the SEP1, SEP2 and SEP3 genes result in the replacement of the stamens and petals by sepals and of the carpels by a new mutant flower with sepaloid organs. {ECO:0000269|PubMed:10821278}. Early flower mutant phenotypes are lessened in later-arising flowers which appear more normal whilst still displaying significant perturbations of organ development.,Gynoecium often supported by an elongated gynophore.,Many flowers display a loss of fourth whorl determinancy.,Profound changes in early arising flowers. Both organ numbers and organ identity are affected in a highly variable manner.,Stellate trichomes are frequently observed on carpels (never on wild-type).,Adaxial epidermal cells have a slightly irregular edge indicating a partial adoption of leaf fate.,All flower organs resemble sepals. The second whorl has four green sepal-like organs (instead of four white petals) which are differentiated of interspersed stomata and the conversion of nearly all of the cells into sepal cells. Sepals replace stamens in the third whorl. The fourth whorl is a reiteration of whorls 1 2 and 3.,All flower organs are converted to leaf-like organs most strikingly on their adaxial surface. Abaxial epidermal cells are made up of a mixture of leaf- and sepal-like characteristics. Leaf characteristics include an abundance of branched trichomes.,Normal flowers apart from a reduction in the number of stamens.,Adaxial surface of first whorl organs are unaffected.,Non-described subtle phenotype. FUNCTION: Probable transcription factor active in inflorescence development and floral organogenesis. Functions with SEPALLATA1/AGL2 and SEPALLATA2/AGL4 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Interacts with APETALA1, AGAMOUS or APETALA3/PISTILLATA to form complexes, that could be involved in genes regulation during floral meristem development (PubMed:10821278, PubMed:11206550). Binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:16080001). {ECO:0000269|PubMed:10821278, ECO:0000269|PubMed:11206550, ECO:0000269|PubMed:16080001}. 29066,27323 Developmental protein SEPALLATA 3 (Agamous-like MADS-box protein AGL9),K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell fate specification [GO:0001708]; flower development [GO:0009908]; plant ovule development [GO:0048481]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; specification of floral organ identity [GO:0010093]; specification of floral organ number [GO:0048833]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed early during flower development within petals, stamens, and carpels. locus:2032372; AT1G24260 Transcription factor MADS-box transcription factor 8 (MADS-box protein 24) (OsMADS24) (OsMADS8) Q9SAR1 MADS8_ORYSJ MADS8 MADS24 Os09g0507200 LOC_Os09g32948 OsJ_29947 FUNCTION: Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. ENOG411DWYS F8J2_150 Q9SJ41,Q9LF94,A0A1P8AZ14 C3H18_ARATH,Q9LF94_ARATH,A0A1P8AZ14_ARATH Zinc finger CCCH domain-containing protein 18 (AtC3H18) (EC 3.1.-.-),Uncharacterized protein F8J2_150 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein),CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein FUNCTION: Possesses ribonuclease activity in vitro. {ECO:0000269|PubMed:18582464}. 3.1.-.- 61349,43301,55886 Zinc finger CCCH domain-containing protein 18 (AtC3H18) (EC 3.1.-.-),Uncharacterized protein F8J2_150 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein),CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein DNA binding [GO:0003677]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; RNA binding [GO:0003723],plant-type cell wall [GO:0009505]; metal ion binding [GO:0046872]; RNA binding [GO:0003723],metal ion binding [GO:0046872]; RNA binding [GO:0003723] locus:2051239;,locus:2085211; AT2G05160,AT3G52980 zinc finger CCCH domain-containing protein Putative zinc finger CCCH domain-containing protein 51 (OsC3H51),Zinc finger CCCH domain-containing protein 54 (OsC3H54),Os07g0583300 protein (Fragment),Os08g0126700 protein (Fragment) Q84ZT0,Q6ZK57,A0A0P0X883,A0A0P0XBW0 C3H51_ORYSJ,C3H54_ORYSJ,A0A0P0X883_ORYSJ,A0A0P0XBW0_ORYSJ Os07g0583300 LOC_Os07g39440 OJ1127_E01.106 OsJ_023926,Os08g0126700 LOC_Os08g03310 OJ1163_G08.18 OsJ_024860,Os07g0583300 OSNPB_070583300,Os08g0126700 OSNPB_080126700 ENOG411DWYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gibberellin 3-beta-dioxygenase 1-like NA NA NA NA NA NA NA ENOG411DWYU F4JGS0,A0A1P8B7N0 F4JGS0_ARATH,A0A1P8B7N0_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein 66317,65748 P-loop containing nucleoside triphosphate hydrolases superfamily protein cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; proteasome regulatory particle, base subcomplex [GO:0008540]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2137261; AT4G04180 AAA-type ATPase family protein Os02g0740300 protein (Putative AAA family ATPase) (cDNA clone:J013122E14, full insert sequence) Q6Z7T4 Q6Z7T4_ORYSJ Os02g0740300 OSNPB_020740300 P0516G10.11 ENOG411DWYV SIGC O24621,A0A1I9LN22 SIGC_ARATH,A0A1I9LN22_ARATH RNA polymerase sigma factor sigC (Sigma factor C) (Sigma-C) (RNA polymerase sigma factor sig3) (Atsig3) (Sigma factor 3),RNApolymerase sigma-subunit C FUNCTION: Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. {ECO:0000269|PubMed:10734058, ECO:0000269|PubMed:12602869}. 64906,46704 RNA polymerase sigma factor sigC (Sigma factor C) (Sigma-C) (RNA polymerase sigma factor sig3) (Atsig3) (Sigma factor 3),RNApolymerase sigma-subunit C chloroplast [GO:0009507]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; plastid sigma factor activity [GO:0001053]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to light stimulus [GO:0071482]; DNA-templated transcription, initiation [GO:0006352]; regulation of RNA biosynthetic process [GO:2001141],DNA binding [GO:0003677]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA-templated transcription, initiation [GO:0006352] TISSUE SPECIFICITY: Highly expressed in leaves, to a lower extent in cotyledons, and barely expressed in roots. Present in seeds, seedlings and etiolated plantlets. {ECO:0000269|PubMed:10946105, ECO:0000269|PubMed:12602869, ECO:0000269|PubMed:15807777, ECO:0000269|PubMed:9405719}. locus:2084420; AT3G53920 RNA polymerase sigma factor Os05g0589200 protein (Fragment) Q0DFH9 Q0DFH9_ORYSJ Os05g0589200 Os05g0589200 OSNPB_050589200 ENOG411DWYW Q8LEV3,A0A1P8B014,F4INV5 Y2060_ARATH,A0A1P8B014_ARATH,F4INV5_ARATH BTB/POZ domain-containing protein At2g30600,BTB/POZ domain-containing protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 92175,83010,97696 BTB/POZ domain-containing protein At2g30600,BTB/POZ domain-containing protein cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2064362; AT2G30600 BTB POZ domain-containing protein Os05g0345500 protein Q5W6S2,A0A0P0WL32 Q5W6S2_ORYSJ,A0A0P0WL32_ORYSJ Os05g0345500 B1036C05.9 OSNPB_050345500,Os05g0345500 OSNPB_050345500 ENOG411DWY8 Q94JU2 WTR18_ARATH WAT1-related protein At3g28050 40056 WAT1-related protein At3g28050 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2091363; AT3G28050 auxin-induced protein 5NG4-like NA NA NA NA NA NA NA ENOG411DWY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) (Fragment),Os04g0326201 protein,Os04g0314100 protein (Fragment) Q7XKI0,Q7XTG5,Q7XTG9,Q7XTH0,Q0JE53,A0A0P0XFS3,A0A0P0W9C2,A0A0P0W8S5,A0A0P0W8V5,A0A0P0W8H5 Q7XKI0_ORYSJ,Q7XTG5_ORYSJ,Q7XTG9_ORYSJ,Q7XTH0_ORYSJ,Q0JE53_ORYSJ,A0A0P0XFS3_ORYSJ,A0A0P0W9C2_ORYSJ,A0A0P0W8S5_ORYSJ,A0A0P0W8V5_ORYSJ,A0A0P0W8H5_ORYSJ OSJNBb0033P05.7 Os04g0326100 OSNPB_040326100,Os04g0320700 OsJ_14301 OSJNBa0041M06.3 OSJNBb0026L04.11 OSNPB_040320700,Os04g0319800 OSJNBb0026L04.7 OSNPB_040319800,Os04g0319700 Os04g0319700 OSJNBb0026L04.6 OSNPB_040319700,Os04g0324100 Os04g0324100 OSNPB_040324100,Os08g0404000 OSNPB_080404000,Os04g0320700 OSNPB_040320700,Os04g0326201 OSNPB_040326201,Os04g0321100 OSNPB_040321100,Os04g0314100 OSNPB_040314100 ENOG411DWY0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os08g0132500 protein,Os06g0160600 protein Q69R49,A0A0N7KLK6 Q69R49_ORYSJ,A0A0N7KLK6_ORYSJ Os08g0132500 OsJ_25943 OSJNBb0009H02.35 OSNPB_080132500,Os06g0160600 OSNPB_060160600 ENOG411DWY1 Q9M898,A0A178VC85 Q9M898_ARATH,A0A178VC85_ARATH AT3g02420/F16B3_5 (Dihydroflavonol 4-reductase/flavanone protein) (F16B3.5 protein),Dihydroflavonol 4-reductase/flavanone protein 39611,31761 AT3g02420/F16B3_5 (Dihydroflavonol 4-reductase/flavanone protein) (F16B3.5 protein),Dihydroflavonol 4-reductase/flavanone protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasmodesma [GO:0009506],integral component of membrane [GO:0016021] locus:2076874; AT3G02420 Uncharacterised protein family (UPF0121) Os05g0589000 protein (cDNA clone:001-043-A08, full insert sequence) (cDNA clone:J023099O12, full insert sequence),Os01g0604700 protein,Os01g0604700 protein (Fragment) B7E741,Q0JLF1,A0A0P0V4Z0 B7E741_ORYSJ,Q0JLF1_ORYSJ,A0A0P0V4Z0_ORYSJ Os05g0589000 OSNPB_050589000,Os01g0604700 Os01g0604700 OSNPB_010604700,Os01g0604700 OSNPB_010604700 ENOG411DWY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase Os06g0560700 protein (Putative proline-rich protein APG) (cDNA clone:001-114-A03, full insert sequence) Q5Z916 Q5Z916_ORYSJ Os06g0560700 Os06g0560700 OsJ_21696 OSNPB_060560700 P0528E12.25 ENOG411DWY3 NSP5,F17A17.6 Q93XW5,Q9S7W4 NSP5_ARATH,Q9S7W4_ARATH Nitrile-specifier protein 5 (AtNSP5),AT3g07720/F17A17_6 (F17A17.6 protein) (Galactose oxidase/kelch repeat superfamily protein) (MLP3.17) (MLP3.17 protein) (Uncharacterized protein At3g07720) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18987211}. FUNCTION: Promotes simple nitriles, but not epithionitrile or thiocyanate formation. Converts allylglucosinolate and benzylglucosinolate to their corresponding simple nitriles in the presence of myrosinase. {ECO:0000269|PubMed:18987211}. MISCELLANEOUS: Does not contain the mannose-binding lectin domain present in other members of the family. 35853,35686 Nitrile-specifier protein 5 (AtNSP5),AT3g07720/F17A17_6 (F17A17.6 protein) (Galactose oxidase/kelch repeat superfamily protein) (MLP3.17) (MLP3.17 protein) (Uncharacterized protein At3g07720) cytosol [GO:0005829]; glucosinolate catabolic process [GO:0019762]; nitrile biosynthetic process [GO:0080028],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; response to zinc ion [GO:0010043] locus:2164733;,locus:2077502; AT5G48180,AT3G07720 Nitrile-specifier protein Kelch repeat containing protein (Os09g0249000 protein) (cDNA clone:J023138D22, full insert sequence) Q6ZXK6 Q6ZXK6_ORYSJ kr1 Os09g0249000 OSNPB_090249000 ENOG411DWY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain (By similarity) Acyl-[acyl-carrier-protein] desaturase 3, chloroplastic (EC 1.14.19.-),Os02g0504800 protein B9F058,A0A0P0VJG5 STAD3_ORYSJ,A0A0P0VJG5_ORYSJ Os02g0504800 LOC_Os02g30200 OJ1003_F04.32 OsJ_06845,Os02g0504800 OSNPB_020504800 FUNCTION: Introduces a cis double bond in the acyl chain of an acyl-[acyl-carrier protein]. {ECO:0000305}. ENOG411DWY5 TBL42 Q9ZV89 TBL42_ARATH Protein trichome birefringence-like 42 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 40568 Protein trichome birefringence-like 42 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2037498; AT1G78710 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411DWY6 GT11 O81072 GT11_ARATH Probable xyloglucan galactosyltransferase GT11 (EC 2.4.1.-) (Glycosyltransferase 11) (AtGT11) FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 83969 Probable xyloglucan galactosyltransferase GT11 (EC 2.4.1.-) (Glycosyltransferase 11) (AtGT11) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, stems and sepals. {ECO:0000269|PubMed:15020758}. locus:2066091; AT2G29040 exostosin family NA NA NA NA NA NA NA ENOG411DWY7 AT4G16650.1 Q8LPF8 Q8LPF8_ARATH At4g16650/dl4350w (Growth regulator like protein) (O-fucosyltransferase family protein) 63535 At4g16650/dl4350w (Growth regulator like protein) (O-fucosyltransferase family protein) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2130938; AT4G16650 DUF246 domain-containing protein Os04g0551300 protein,Os04g0551300 protein (cDNA clone:001-042-D05, full insert sequence) Q0JB77,B7E731 Q0JB77_ORYSJ,B7E731_ORYSJ Os04g0551300 Os04g0551300 OSNPB_040551300,Os04g0551300 OSNPB_040551300 ENOG411DRG3 MGP4 Q9M146 MGP4_ARATH UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 (EC 2.4.2.-) (Protein MALE GAMETOPHYTE DEFECTIVE 4) (Rhamnogalacturonan xylosyltransferase MGP4) DISRUPTION PHENOTYPE: Reduced fertility due to impaired growth of pollen tubes in the transmitting tract during fertilization. {ECO:0000269|PubMed:21288267}. Null: Complete male gametophyte defective; Knockdown: Male gametophyte defective; Homozygotes are viable: Reduced fertility-D. Ye-2011 FUNCTION: Catalyzes the transfer of D-xylose from UDP-alpha-D-xylose onto L-fucose. Probably involved in the biosynthesis of rhamnogalacturonan II (RG-II) through xylosylation of the internal fucose moiety of the A-chain of RG-II, a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues such as roots and pollen tube growth and elongation. {ECO:0000269|PubMed:21288267}. 2.4.2.- 41121 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 (EC 2.4.2.-) (Protein MALE GAMETOPHYTE DEFECTIVE 4) (Rhamnogalacturonan xylosyltransferase MGP4) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; UDP-xylosyltransferase activity [GO:0035252]; xylosyltransferase activity [GO:0042285]; pollen tube development [GO:0048868]; rhamnogalacturonan II biosynthetic process [GO:0010306] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:21288267, ECO:0000269|PubMed:21421394}. locus:2124968; AT4G01220 Nucleotide-diphospho-sugar transferase Glycosyltransferase (EC 2.4.2.-) Q60E68 Q60E68_ORYSJ Os05g0386900 OsJ_18394 OSJNBa0073E05.8 OSNPB_050386900 ENOG411DRG2 Q9LS71 Q9LS71_ARATH AT3g29240/MXO21_9 (PPR containing protein (DUF179)) 34551 AT3g29240/MXO21_9 (PPR containing protein (DUF179)) chloroplast [GO:0009507] locus:2094817; AT3G29240 Uncharacterized ACR COG1678 Os10g0330400 protein (cDNA clone:001-204-C11, full insert sequence) (cDNA clone:006-205-D03, full insert sequence) (cDNA clone:006-302-F12, full insert sequence) (cDNA clone:J013007O07, full insert sequence) Q7G645 Q7G645_ORYSJ LOC_Os10g18370 Os10g0330400 OsJ_31097 OSJNAb0008A05.12 OSJNBb0008A05.2 OSNPB_100330400 ENOG411DRG1 AtMYB20,MYB99,MYB43 Q9C7U7,Q9SNW9,Q9SPG7 Q9C7U7_ARATH,Q9SNW9_ARATH,Q9SPG7_ARATH At1g66230 (MYB transcription factor) (Myb domain protein 20) (Myb-related transcription factor, putative; 17635-18559),MYB transcription factor (Myb domain protein 99) (Myb family transcription factor) (Putative transcription factor) (Transcription factor-like),MYB transcription factor (Myb domain protein 43) (Putative transcription factor) (Transcription factor) (Uncharacterized protein At5g16600) formed small siliques with only few viable seeds. Scanning electron microscopy of pollen grains from plants homozygous for the T-DNA insertion revealed no morphological differences compared to wild-type pollen. However light microscopy showed that tapetal cells were relatively thin compared to those from the wild type at the same stage of development and the number of viable pollen grains tested by fluorescein diacetate stain was smaller the T-DNA insertion line. Reduced fertility; Thin tapetal cells-E. Meyerowitz-2007 FUNCTION: Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. MISCELLANEOUS: Plants overexpressing MYB20 display increased tolerance to salt stress. {ECO:0000269|PubMed:23660402}. 32336,27356,37114 At1g66230 (MYB transcription factor) (Myb domain protein 20) (Myb-related transcription factor, putative; 17635-18559),MYB transcription factor (Myb domain protein 99) (Myb family transcription factor) (Putative transcription factor) (Transcription factor-like),MYB transcription factor (Myb domain protein 43) (Putative transcription factor) (Transcription factor) (Uncharacterized protein At5g16600) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737] locus:2205283;,locus:2167968;,locus:2174195; AT1G66230,AT5G62320,AT5G16600 Transcription factor Os09g0401000 protein (Putative Myb51 protein) Q6ES55 Q6ES55_ORYSJ Os09g0401000 Os09g0401000 OsJ_29287 OSNPB_090401000 P0435D08.47 P0650H04.29 ENOG411DRG0 Q6NQA0 Q6NQA0_ARATH At1g45110 (Tetrapyrrole (Corrin/Porphyrin) Methylase) (Uncharacterized protein At1g45110) 38052 At1g45110 (Tetrapyrrole (Corrin/Porphyrin) Methylase) (Uncharacterized protein At1g45110) methyltransferase activity [GO:0008168]; enzyme-directed rRNA 2'-O-methylation [GO:0000453] locus:2028215; AT1G45110 ribosomal RNA small subunit methyltransferase Expressed protein (Os10g0414500 protein) (cDNA clone:J013114M12, full insert sequence) Q338C6 Q338C6_ORYSJ Os10g0414500 LOC_Os10g27450 Os10g0414500 OsJ_31511 OSNPB_100414500 ENOG411DRG7 ERS1 Q38846 ERS1_ARATH Ethylene response sensor 1 (AtERS1) (EC 2.7.11.-) (EC 2.7.13.3) (Protein ERS1) DISRUPTION PHENOTYPE: No visible phenotype in ethylene response; due to the redundancy with ETR1. Ers1 and etr1 double mutants display a constitutive ethylene-response phenotype. {ECO:0000269|PubMed:17224067}. FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling. 2.7.11.-; 2.7.13.3 68333 Ethylene response sensor 1 (AtERS1) (EC 2.7.11.-) (EC 2.7.13.3) (Protein ERS1) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ethylene binding [GO:0051740]; metal ion binding [GO:0046872]; phosphorelay sensor kinase activity [GO:0000155]; protein histidine kinase activity [GO:0004673]; protein serine/threonine kinase activity [GO:0004674]; receptor activity [GO:0004872]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of ethylene-activated signaling pathway [GO:0010105] TISSUE SPECIFICITY: Expressed in etiolated seedlings, leaves, stems, roots, flowers, embryos, anthers, carpels and ovules. {ECO:0000269|PubMed:9707532}. locus:2058500; AT2G40940 Ethylene receptor Probable ethylene response sensor 1 (OsERS1) (EC 2.7.13.3) (Ethylene response factor 1) Q53RH0 ERS1_ORYSJ ERS1 Os03g0701700 LOC_Os03g49500 OsJ_12251 DISRUPTION PHENOTYPE: Dwarf, chlorina and half sterility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling. {ECO:0000250|UniProtKB:P49333}. ENOG411DRG6 F4K2C3,A0A1P8BC62,A0A1P8BC50,F4K2C1,F4K2C2 F4K2C3_ARATH,A0A1P8BC62_ARATH,A0A1P8BC50_ARATH,F4K2C1_ARATH,F4K2C2_ARATH ARM repeat superfamily protein 119677,119549,120532,121189,120404 ARM repeat superfamily protein nucleus [GO:0005634]; Ran GTPase binding [GO:0008536]; intracellular protein transport [GO:0006886],cytoplasm [GO:0005737]; nuclear pore [GO:0005643]; nuclear export signal receptor activity [GO:0005049]; Ran GTPase binding [GO:0008536]; protein export from nucleus [GO:0006611] locus:2152840; AT5G06120 Inherit from KOG: ran binding protein Os01g0278200 protein (Fragment),Os03g0616700 protein (Fragment) Q0JNM3,A0A0P0W087 Q0JNM3_ORYSJ,A0A0P0W087_ORYSJ Os01g0278200 Os01g0278200 OSNPB_010278200,Os03g0616700 OSNPB_030616700 ENOG411DRG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type II intron maturase NA NA NA NA NA NA NA ENOG411DRG4 CRPK1 Q93YN1 CRPK1_ARATH Cold-responsive protein kinase 1 (EC 2.7.11.1) DISRUPTION PHENOTYPE: Enhanced freezing tolerance due to impaired phosphorylation and subsequent translocation of 14-3-3 proteins in cold conditions. Altered cold induction of cold-responsive C-repeat-binding factor (CBF) target genes. {ECO:0000269|PubMed:28344081}. FUNCTION: Negative regulator of freezing tolerance that phosphorylates 14-3-3 proteins (e.g. GRF6) thus triggering their translocation from the cytosol to the nucleus in response to cold stress. {ECO:0000269|PubMed:28344081}. 2.7.11.1 43289 Cold-responsive protein kinase 1 (EC 2.7.11.1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; positive regulation of protein import into nucleus, translocation [GO:0033160]; protein autophosphorylation [GO:0046777]; response to freezing [GO:0050826]; response to insect [GO:0009625]; response to molecule of bacterial origin [GO:0002237] locus:2017923; AT1G16670 receptor-like serine threonine-protein kinase Os02g0165100 protein (Putative receptor protein kinase PERK) (cDNA clone:J013073C06, full insert sequence),Os06g0676600 protein (Receptor protein kinase PERK-like) (cDNA clone:J033131K11, full insert sequence),OSJNBa0058K23.11 protein (Os04g0619400 protein) (cDNA clone:J013067H07, full insert sequence) (cDNA clone:J013067H10, full insert sequence) Q6H6V1,Q653V5,Q7XTU1 Q6H6V1_ORYSJ,Q653V5_ORYSJ,Q7XTU1_ORYSJ Os02g0165100 Os02g0165100 OJ1661_C12.29 OSJNBa0023I17.12 OSNPB_020165100,Os06g0676600 Os06g0676600 B1153E06.9 OSNPB_060676600 P0710B08.3,Os04g0619400 OSJNBa0058K23.11 OSNPB_040619400 ENOG411DRG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0699600 protein (Fragment),Os01g0699500 protein (Fragment) Q0JK34,Q0JK35 Q0JK34_ORYSJ,Q0JK35_ORYSJ Os01g0699600 Os01g0699600 OSNPB_010699600,Os01g0699500 Os01g0699500 OSNPB_010699500 ENOG411DRG8 MPA24.9 B9DHA4,A0A1P8BAU3,Q1ECQ9,F4JXJ5 B9DHA4_ARATH,A0A1P8BAU3_ARATH,Q1ECQ9_ARATH,F4JXJ5_ARATH AT5G65740 protein (Zinc ion binding protein),Zinc ion binding protein,AT5G65740 protein (At5g65740) (Zinc ion binding protein) 34446,28855,24796,28729 AT5G65740 protein (Zinc ion binding protein),Zinc ion binding protein,AT5G65740 protein (At5g65740) (Zinc ion binding protein) Fanconi anaemia nuclear complex [GO:0043240]; ubiquitin-protein transferase activity [GO:0004842]; DNA repair [GO:0006281] locus:2169995; AT5G65740 WD-repeat region Os03g0726900 protein (Fragment) A0A0P0W347,A0A0P0W2F9 A0A0P0W347_ORYSJ,A0A0P0W2F9_ORYSJ Os03g0726900 OSNPB_030726900 ENOG411DRGC RAP2-7,RAP2.7 Q9SK03,A0A1P8AYJ5,A0A1P8AYM1,A0A1P8AYL0,F4IIR3 RAP27_ARATH,A0A1P8AYJ5_ARATH,A0A1P8AYM1_ARATH,A0A1P8AYL0_ARATH,F4IIR3_ARATH Ethylene-responsive transcription factor RAP2-7 (Protein RELATED TO APETALA2 7) (Protein TARGET OF EAT 1),Related to AP2.7 Early flowering-M. Schmid-2009 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. 49429,29451,31666,37669,51157 Ethylene-responsive transcription factor RAP2-7 (Protein RELATED TO APETALA2 7) (Protein TARGET OF EAT 1),Related to AP2.7 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2056573; AT2G28550 Transcription factor Os05g0121600 protein (Transcription factor AP2D23-like) Q2TQ34 Q2TQ34_ORYSJ AP2D23 Os05g0121600 OSNPB_050121600 ENOG411DRGB GT19 Q9SUW1 GT19_ARATH Probable xyloglucan galactosyltransferase GT19 (EC 2.4.1.-) (Glycosyltransferase 19) (AtGT19) FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 50361 Probable xyloglucan galactosyltransferase GT19 (EC 2.4.1.-) (Glycosyltransferase 19) (AtGT19) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, stems, stamens and pollen grains. {ECO:0000269|PubMed:15020758}. locus:2127495; AT4G22580 xyloglucan galactosyltransferase Exostosin family protein, expressed (Os10g0553600 protein),Os07g0562051 protein (Fragment) Q9FWQ3,A0A0P0X7N8 Q9FWQ3_ORYSJ,A0A0P0X7N8_ORYSJ OSJNBa0015J15.1 LOC_Os10g40559 Os10g0553600 OsJ_32407 OSNPB_100553600,Os07g0562051 OSNPB_070562051 ENOG411DRGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Probable glucuronosyltransferase Os02g0520750 (EC 2.4.-.-) Q6H4N0 GT21_ORYSJ Os02g0520750 LOC_Os02g32110 OSJNBb0003H22.12 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411DRGG P58IPK Q9LYW9 DNJ36_ARATH DnaJ protein P58IPK homolog (AtP58IPK) (Chaperone protein dnaJ 36) (AtDjA36) (AtJ36) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the mutant plants die rapidly after challenges with the turnip mosaic virus (TuMV) and turnip vein clearing virus (TVCV). The double mutant erdj3b and p58ipk is male gametophytic lethal. {ECO:0000269|PubMed:12737801, ECO:0000269|PubMed:18718935}. same as smb-3 single mutant,Homozygotes have WT phenotype,Double homozygotes not obtained because of male gametophytic defect.,embryo lethal. FUNCTION: Plays an important positive role in viral symptom development and is required for viral multiplication and pathogenesis. {ECO:0000269|PubMed:12737801}. R-ATH-6798695; 53690 DnaJ protein P58IPK homolog (AtP58IPK) (Chaperone protein dnaJ 36) (AtDjA36) (AtJ36) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; plasma membrane [GO:0005886]; positive regulation by host of viral process [GO:0044794]; viral process [GO:0016032] TISSUE SPECIFICITY: Expressed in flower buds and flowers. {ECO:0000269|PubMed:18718935}. locus:2143553; AT5G03160 dnaJ homolog subfamily C member DnaJ protein P58IPK homolog B (OsP58B) (Chaperone protein dnaJ C15) (OsDjC15),DnaJ protein P58IPK homolog A (OsP58A) (Chaperone protein dnaJ C16) (OsDjC16) Q5JNB5,A0A0P0VG31 DJC15_ORYSJ,DJC16_ORYSJ P58B DJC15 Os01g0977200 LOC_Os01g74580 P0020E09.19,P58A DJC16 Os02g0195300 LOC_Os02g10180 OJ1225_F07.10 OsJ_05745 FUNCTION: May play a role in protein folding in the endoplasmic reticulum. {ECO:0000305|PubMed:24153418}. ENOG411DRGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411DRGE ORC3 Q6E7H0,A0A1P8BC82 ORC3_ARATH,A0A1P8BC82_ARATH Origin of replication complex subunit 3 (AtORC3),Origin recognition complex subunit 3 FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. {ECO:0000250|UniProtKB:Q9UBD5}. R-ATH-68616;R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69298; 82755,80053 Origin of replication complex subunit 3 (AtORC3),Origin recognition complex subunit 3 DNA replication preinitiation complex [GO:0031261]; nuclear chromosome, telomeric region [GO:0000784]; nuclear origin of replication recognition complex [GO:0005664]; nuclear pre-replicative complex [GO:0005656]; origin recognition complex [GO:0000808]; DNA replication origin binding [GO:0003688]; DNA replication [GO:0006260]; DNA replication initiation [GO:0006270]; lateral root development [GO:0048527]; pre-replicative complex assembly involved in nuclear cell cycle DNA replication [GO:0006267]; response to sucrose [GO:0009744],nuclear origin of replication recognition complex [GO:0005664]; DNA binding [GO:0003677]; DNA replication [GO:0006260] TISSUE SPECIFICITY: Follow a cell-cycle regulation with a peak at the G1/S-phase (PubMed:16179646). Mostly expressed in siliques and flowers, and, to a lower exent, in flower buds, leaves, roots and stems (PubMed:16179646, PubMed:15358564). {ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}. locus:2148995; AT5G16690 Origin recognition complex subunit Origin of replication complex subunit 3 (OsORC3) Q0IY07 ORC3_ORYSJ ORC3 LOC_Os10g26280 Os10g0402200 OsJ_31450 OSJNBa0044A10.12 FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. {ECO:0000250|UniProtKB:Q9UBD5}. ENOG411DRGD EIF4A3 Q94A52 RH2_ARATH Eukaryotic initiation factor 4A-III homolog (AteIF4AIII) (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (DEAD-box ATP-dependent RNA helicase 2) (AtRH02) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings show increased sensitivity to cold and heat stresses. {ECO:0000269|PubMed:24743583}. FUNCTION: ATP-dependent RNA helicase. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Its RNA-dependent ATPase and RNA-helicase activities are induced by MLN51/CASC3, but abolished in presence of the MAGO-Y14 heterodimer, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The inhibition of ATPase activity by the MAGO-Y14 heterodimer increases the RNA-binding affinity of the EJC (By similarity). Plays a role in abiotic stress adaptation. Can regulate abiotic stress resistance partially via the control of acetoacetyl-CoA thiolase 2 (AC Q8S4Y1) expression (PubMed:26883227). {ECO:0000250|UniProtKB:P38919, ECO:0000269|PubMed:26883227}.; FUNCTION: (Microbial infection) Functions as host RNA helicase that is co-opted by the tombusvirus (TBSV) RNA replication enhancer to greatly enhance tombusvirus replication. Interacts with the viral minus-strand RNA and the replication proteins within the viral replicase. {ECO:0000269|PubMed:24743583}. R-ATH-72163;R-ATH-975957; 3.6.4.13 45845 Eukaryotic initiation factor 4A-III homolog (AteIF4AIII) (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (DEAD-box ATP-dependent RNA helicase 2) (AtRH02) catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; exon-exon junction complex [GO:0035145]; membrane [GO:0016020]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; regulation of gene expression [GO:0010468]; regulation of translation [GO:0006417]; response to hypoxia [GO:0001666]; RNA secondary structure unwinding [GO:0010501]; RNA splicing [GO:0008380] locus:2091191; AT3G19760 RNA helicase Eukaryotic initiation factor 4A-III homolog B (OseIF4AIIIb) (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (DEAD-box ATP-dependent RNA helicase 34) (OsRH34),Eukaryotic initiation factor 4A-III homolog A (OseIF4AIIIa) (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (DEAD-box ATP-dependent RNA helicase 2) (OsRH2) Q10I26,Q5VNM3 IF43B_ORYSJ,IF43A_ORYSJ EIF4A3B EIF4A3 RH34 Os03g0566800 LOC_Os03g36930 OSJNBa0026A15.3,EIF4A3A EIF4A3 RH2 Os01g0639100 LOC_Os01g45190 OsJ_02769 P0004A09.21 P0696E01.42 FUNCTION: ATP-dependent RNA helicase. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Its RNA-dependent ATPase and RNA-helicase activities are induced by MLN51/CASC3, but abolished in presence of the MAGO-Y14 heterodimer, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The inhibition of ATPase activity by the MAGO-Y14 heterodimer increases the RNA-binding affinity of the EJC (By similarity). EJC core proteins play essential roles in rice development, growth and reproduction. Regulates the splicing of UDT1 (UNDEVELOPED TAPETUM 1) pre-mRNA transcript. UDT1 is a key regulator in stamen development (PubMed:27071313). {ECO:0000250|UniProtKB:P38919, ECO:0000269|PubMed:27071313}. ENOG411DRGK Q9LH39 PHSD_ARATH Probable polyamine transporter At3g19553 FUNCTION: Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. {ECO:0000250}. 52843 Probable polyamine transporter At3g19553 integral component of plasma membrane [GO:0005887]; amino acid transmembrane transporter activity [GO:0015171]; antiporter activity [GO:0015297]; polyamine transmembrane transporter activity [GO:0015203]; symporter activity [GO:0015293]; polyamine transport [GO:0015846] locus:2101520; AT3G19553 amino acid permease family protein Polyamine transporter PUT1 (Polyamine uptake transporter 1) (OsPUT1),Amino acid permease family protein, putative, expressed (Os03g0576900 protein) (Putative amino acid permease),Amino acid permease family protein, putative, expressed (Os03g0576900 protein) (cDNA clone:001-047-G03, full insert sequence),Amino acid permease family protein, putative, expressed (Os03g0576900 protein) (cDNA clone:J023084D13, full insert sequence),Os12g0580400 protein,Os03g0576900 protein (Fragment),Os08g0525300 protein Q6Z8D0,Q75G90,Q10HT3,Q10HT5,A0A0N7KU97,A0A0P0VZL2,A0A0P0XI35 PUT1_ORYSJ,Q75G90_ORYSJ,Q10HT3_ORYSJ,Q10HT5_ORYSJ,A0A0N7KU97_ORYSJ,A0A0P0VZL2_ORYSJ,A0A0P0XI35_ORYSJ PUT1 Os02g0700500 LOC_Os02g47210 OJ1111_E07.11 OsJ_08051 P0459B01.40,Os03g0576900 LOC_Os03g37984 OSJNBa0008D12.5 OSNPB_030576900,Os03g0576900 LOC_Os03g37984 OSNPB_030576900,LOC_Os03g37984 Os03g0576900 OSNPB_030576900,Os12g0580400 OSNPB_120580400,Os03g0576900 OSNPB_030576900,Os08g0525300 OSNPB_080525300 FUNCTION: Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Possesses high affinity for spermidine and lower affinity for spermine and putrescine. Transports paraquat, a polyamine analog, and thus confers sensitivity to this chemical which is used as a herbicide. {ECO:0000269|PubMed:21796369}. ENOG411DRGJ TOC34,TOC33 Q38906,O23680 TOC34_ARATH,TOC33_ARATH Translocase of chloroplast 34, chloroplastic (AtToc34) (EC 3.6.5.-) (34 kDa chloroplast outer envelope protein) (GTP-binding protein OEP34) (Plastid protein import 3),Translocase of chloroplast 33, chloroplastic (AtToc33) (EC 3.6.5.-) (33 kDa chloroplast outer envelope protein) (Plastid protein import 1) DISRUPTION PHENOTYPE: Plants exhibits a pale yellowish phenotype. {ECO:0000269|PubMed:10998188, ECO:0000269|PubMed:11553737, ECO:0000269|PubMed:12897258}. Defective in POR B uptake into chlorolasts Short roots-P. Jarvis-2004,Pale green-J. Chory-1998 FUNCTION: GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast. {ECO:0000269|PubMed:12741849, ECO:0000269|PubMed:12897258, ECO:0000269|PubMed:15053763, ECO:0000269|PubMed:16435266}.,FUNCTION: GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Binds GTP, GDP, XTP, but not ATP. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast, especially during early development stages. {ECO:0000269|PubMed:11553737, ECO:0000269|PubMed:12741849, ECO:0000269|PubMed:12782294, ECO:0000269|PubMed:12869544, ECO:0000269|PubMed:12897258, ECO:0000269|PubMed:12951325, ECO:0000269|PubMed:15053763, ECO:0000269|PubMed:16412428, ECO:0000269|PubMed:16435266, ECO:0000269|PubMed:18054337}. ARA:AT1G02280-MONOMER; 3.6.5.2; 3.6.5.- 34707,32925 Translocase of chloroplast 34, chloroplastic (AtToc34) (EC 3.6.5.-) (34 kDa chloroplast outer envelope protein) (GTP-binding protein OEP34) (Plastid protein import 3),Translocase of chloroplast 33, chloroplastic (AtToc33) (EC 3.6.5.-) (33 kDa chloroplast outer envelope protein) (Plastid protein import 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; chloroplast localization [GO:0019750]; protein targeting to chloroplast [GO:0045036],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein homodimerization activity [GO:0042803]; protein targeting to chloroplast [GO:0045036] DEVELOPMENTAL STAGE: Expressed at a relatively uniform, low level at most stages of development. Observed in cotyledons and hypocotyls of young seedling. Expressed in apical meristems. Found in the whole roots. Expressed in middle-aged leaves. In flowers, mostly localized in meristems, but is also present in all organs. {ECO:0000269|PubMed:10998188, ECO:0000269|PubMed:12897258}.,DEVELOPMENTAL STAGE: Mostly expressed in photosynthetic tissues undergoing rapid growth. Observed in cotyledons and vascular tissues of hypocotyls of young seedling. In roots, restricted to apical and lateral meristems, and vascular bundles. In stems, mostly detected in the upper part. Expressed in young and middle-aged leaves. In flowers, confined to sepals. {ECO:0000269|PubMed:10998188, ECO:0000269|PubMed:12897258}. TISSUE SPECIFICITY: Mostly expressed in roots and flowers, and, to a lower extent, in seedlings, stems, and leaves. {ECO:0000269|PubMed:10998188, ECO:0000269|PubMed:12897258}.,TISSUE SPECIFICITY: Mostly expressed in seedlings and flowers, and, to a lower extent, in roots, stems, and leaves. {ECO:0000269|PubMed:10998188, ECO:0000269|PubMed:12897258}. locus:2175259;,locus:2204923; AT5G05000,AT1G02280 Translocase of chloroplast Translocase of chloroplast (EC 3.6.5.-) Q10PB3 Q10PB3_ORYSJ Os03g0240500 LOC_Os03g13730 Os03g0240500 OSNPB_030240500 FUNCTION: GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. {ECO:0000256|PIRNR:PIRNR038134}. ENOG411DRGI RRC1 F4KIA8,Q9C5J3,A0A1P8BCT5,A0A1P8BCU4 RRC1L_ARATH,RRC1_ARATH,A0A1P8BCT5_ARATH,A0A1P8BCU4_ARATH Protein RRC1-like (Reduced red-light responses in CRY1CRY2 background 1-like protein),Protein RRC1 (Reduced red-light responses in cry1cry2 background 1),RNA recognition motif (RRM)-containing protein DISRUPTION PHENOTYPE: No photomorphogenic phenotype. {ECO:0000269|PubMed:22324426}.,DISRUPTION PHENOTYPE: Dwarfism and sterile flowers when homozygous and semi-sterility when heterozygous under normal growth conditions. Reduced inhibition of hypocotyl elongation under continuous red light. {ECO:0000269|PubMed:22324426}. FUNCTION: Probable SR-like splicing factor. {ECO:0000250|UniProtKB:Q9C5J3}.,FUNCTION: SR-like splicing factor required for phytochrome B (phyB) signal transduction and involved in phyB-dependent alternative splicing. {ECO:0000269|PubMed:22324426}. R-ATH-72163; 109185,108286,94047,86786 Protein RRC1-like (Reduced red-light responses in CRY1CRY2 background 1-like protein),Protein RRC1 (Reduced red-light responses in cry1cry2 background 1),RNA recognition motif (RRM)-containing protein RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],nuclear speck [GO:0016607]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],RNA binding [GO:0003723]; RNA processing [GO:0006396] TISSUE SPECIFICITY: Expressed in leaves, inflorescence stems, roots, flower buds, open flowers and siliques. {ECO:0000269|PubMed:22324426}. locus:2183775;,locus:2179295; AT5G10800,AT5G25060 Surp module Os02g0179900 protein A0A0P0VFG2 A0A0P0VFG2_ORYSJ Os02g0179900 OSNPB_020179900 ENOG411DRGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 29 (OsPP2C29) (EC 3.1.3.16) Q8H063 P2C29_ORYSJ Os03g0207400 LOC_Os03g10950 OSJNBa0014O06.9 ENOG411DRGQ RPOT3,SCA3 O24600,F4INQ5 RPOT3_ARATH,F4INQ5_ARATH DNA-directed RNA polymerase 3, chloroplastic (EC 2.7.7.6) (Protein SCABRA 3),DNA-directed RNA polymerase (EC 2.7.7.6) DISRUPTION PHENOTYPE: Reduced plant growth, impaired lateral root formation, rounded and pale-green leaves, protruding leaf laminae, irregular leaf margins and reduced seed sets. {ECO:0000269|PubMed:16698900}. Seedling lethal (inferred from pigment defect)-D. Meinke-2003 FUNCTION: Nuclear-encoded DNA-dependent RNA polymerase that catalyzes the transcription of DNA into RNA in chloroplasts using the four ribonucleoside triphosphates as substrates (Probable). Required for chloroplast development and leaf mesophyll cell proliferation (PubMed:16698900). {ECO:0000269|PubMed:16698900, ECO:0000305|PubMed:16698900}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU003805}. 2.7.7.6 112624,101286 DNA-directed RNA polymerase 3, chloroplastic (EC 2.7.7.6) (Protein SCABRA 3),DNA-directed RNA polymerase (EC 2.7.7.6) chloroplast [GO:0009507]; mitochondrial DNA-directed RNA polymerase complex [GO:0034245]; mitochondrion [GO:0005739]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from mitochondrial promoter [GO:0006390],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] locus:2047515; AT2G24120 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) NA NA NA NA NA NA NA ENOG411DRGU CTIMC P48491 TPIS_ARATH Triosephosphate isomerase, cytosolic (TIM) (Triose-phosphate isomerase) (EC 5.3.1.1) This mutant has no visible phenotypic abnormalities when grown for seven weeks under long day conditions. MISCELLANEOUS: In plants, there are two types of TPIS, cytosolic and plastid. PATHWAY: Carbohydrate biosynthesis; gluconeogenesis.; PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1. ARA:AT3G55440-MONOMER;MetaCyc:AT3G55440-MONOMER; R-ATH-70171;R-ATH-70263; 5.3.1.1; 5.3.1.1 27169 Triosephosphate isomerase, cytosolic (TIM) (Triose-phosphate isomerase) (EC 5.3.1.1) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; copper ion binding [GO:0005507]; triose-phosphate isomerase activity [GO:0004807]; cellular carbohydrate metabolic process [GO:0044262]; gluconeogenesis [GO:0006094]; glyceraldehyde-3-phosphate biosynthetic process [GO:0046166]; glycerol catabolic process [GO:0019563]; glycolytic process [GO:0006096]; pentose-phosphate shunt [GO:0006098]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043] locus:2099906; AT3G55440 triosephosphate isomerase Triosephosphate isomerase, cytosolic (TIM) (Triose-phosphate isomerase) (EC 5.3.1.1),Os01g0841600 protein (Putative triosephosphate isomerase) (cDNA clone:001-007-G07, full insert sequence) (cDNA clone:006-204-G07, full insert sequence) (cDNA clone:J023115C24, full insert sequence) (cDNA clone:J023143L20, full insert sequence) P48494,Q8LR75 TPIS_ORYSJ,Q8LR75_ORYSJ TPI Os01g0147900 LOC_Os01g05490 OsJ_00367 P0416D03.45 P0434B04.9,Os01g0841600 OsJ_04035 OSNPB_010841600 P0408C03.42 MISCELLANEOUS: In plants, there are two types of TPIS, cytosolic and plastid. ENOG411DRGT SNRNP48 Q9M8X2 U1148_ARATH U11/U12 small nuclear ribonucleoprotein 48 kDa protein (U11/U12 snRNP 48 kDa protein) (U11/U12-48K) FUNCTION: Likely involved in U12-type 5' splice site recognition. {ECO:0000250}. 81967 U11/U12 small nuclear ribonucleoprotein 48 kDa protein (U11/U12 snRNP 48 kDa protein) (U11/U12-48K) spliceosomal complex [GO:0005681]; metal ion binding [GO:0046872]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2103030; AT3G04160 NA Os04g0349401 protein A0A0N7KIW0 A0A0N7KIW0_ORYSJ Os04g0349401 OSNPB_040349401 ENOG411DRGZ Q93VB0 Q93VB0_ARATH Nucleic acid-binding, OB-fold-like protein (Putative methionyl-tRNA synthetase) 42088 Nucleic acid-binding, OB-fold-like protein (Putative methionyl-tRNA synthetase) aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; cytosol [GO:0005829]; methionyl glutamyl tRNA synthetase complex [GO:0017102]; plasmodesma [GO:0009506]; aminoacyl-tRNA ligase activity [GO:0004812]; tRNA binding [GO:0000049]; tRNA aminoacylation for protein translation [GO:0006418] locus:2064801; AT2G40660 Methionyl-trna Methionyl-tRNA synthetase-like protein (Os01g0821800 protein) (cDNA clone:001-036-F11, full insert sequence) (cDNA clone:J033121G11, full insert sequence),Os01g0821800 protein (Fragment) Q8RUP8,A0A0P0V9T2 Q8RUP8_ORYSJ,A0A0P0V9T2_ORYSJ Os01g0821800 Os01g0821800 OsJ_03899 OSNPB_010821800 P0485B12.15 P0703B11.24,Os01g0821800 OSNPB_010821800 ENOG411DRGX MEE13.8 F4K1G7 F4K1G7_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein 105048 P-loop containing nucleoside triphosphate hydrolases superfamily protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; hydrolase activity [GO:0016787] locus:2162858; AT5G35970 DNA-binding protein Os02g0704300 protein,Os09g0130800 protein (cDNA clone:J013074M06, full insert sequence),Os09g0130800 protein (Fragment),Os09g0130800 protein Q0DYB5,Q0J3D0,A0A0P0XIM7,A0A0P0XIP4,A0A0P0XJP4 Q0DYB5_ORYSJ,Q0J3D0_ORYSJ,A0A0P0XIM7_ORYSJ,A0A0P0XIP4_ORYSJ,A0A0P0XJP4_ORYSJ Os02g0704300 Os02g0704300 OSNPB_020704300,Os09g0130800 Os09g0130800 OsJ_28445 OSNPB_090130800,Os09g0130800 OSNPB_090130800 ENOG411EBEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: protein kinase domain containing protein NA NA NA NA NA NA NA ENOG411EIPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex NA NA NA NA NA NA NA ENOG411EIPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Endoplasmic reticulum metallopeptidase NA NA NA NA NA NA NA ENOG411EIPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EIPZ F17A9.5 Q9M909 Q9M909_ARATH F17A9.5 protein (Syntaxin KNOLLE-like protein) 5770 F17A9.5 protein (Syntaxin KNOLLE-like protein) locus:2828537; AT3G06895 NA NA NA NA NA NA NA NA ENOG411EIPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EIPY PEP4 Q9FIA9 PEP4_ARATH Elicitor peptide 4 FUNCTION: Elicitor of plant defense. {ECO:0000250}. 9077 Elicitor peptide 4 innate immune response [GO:0045087]; response to jasmonic acid [GO:0009753] locus:2178218; AT5G09980 NA NA NA NA NA NA NA NA ENOG411EIPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EIPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os12g0515800 protein) (cDNA clone:J013098I09, full insert sequence),Expressed protein (Os12g0516200 protein),Expressed protein (Os12g0516000 protein) Q2QPV9,Q2QPV6,Q2QPV8 Q2QPV9_ORYSJ,Q2QPV6_ORYSJ,Q2QPV8_ORYSJ Os12g0515800 LOC_Os12g33120 OsJ_36287 OSNPB_120515800,Os12g0516200 LOC_Os12g33150 Os12g0516200 OsJ_36453 OSNPB_120516200,Os12g0516000 LOC_Os12g33130 Os12g0516000 OsJ_36288 OSNPB_120516000 ENOG411EIPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0758250 protein (Fragment) A0A0P0W387 A0A0P0W387_ORYSJ Os03g0758250 OSNPB_030758250 ENOG411EIPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPA Q9SXE9 Q9SXE9_ARATH At1g62480/T3P18_4 (T3P18.4) (Vacuolar calcium-binding protein-like protein) 16628 At1g62480/T3P18_4 (T3P18.4) (Vacuolar calcium-binding protein-like protein) response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] locus:2203926; AT1G62480 NA NA NA NA NA NA NA NA ENOG411EIPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: zinc finger C2HC-type containing NA NA NA NA NA NA NA ENOG411EIPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA conserved peptide upstream open reading frame NA NA NA NA NA NA NA ENOG411EIPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411EIPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0516250 protein (Fragment) A0A0P0XW93 A0A0P0XW93_ORYSJ Os10g0516250 OSNPB_100516250 ENOG411EIP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha/beta hydrolase of unknown function (DUF900) NA NA NA NA NA NA NA ENOG411EIP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411EIP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIP1 Q0V819 Q0V819_ARATH At1g76955 (Expressed protein) 8821 At1g76955 (Expressed protein) locus:1006230724; AT1G76955 NA NA NA NA NA NA NA NA ENOG411EIP8 LCR27,LCR25,LCR26 Q9M0F1,P82739,Q9M0F2 DF161_ARATH,DF159_ARATH,DF160_ARATH Defensin-like protein 161 (Low-molecular-weight cysteine-rich protein 27) (Protein LCR27),Defensin-like protein 159 (Low-molecular-weight cysteine-rich protein 25) (Protein LCR25),Putative defensin-like protein 160 (Putative low-molecular-weight cysteine-rich protein 26) (Protein LCR26) 8511,8360,8555 Defensin-like protein 161 (Low-molecular-weight cysteine-rich protein 27) (Protein LCR27),Defensin-like protein 159 (Low-molecular-weight cysteine-rich protein 25) (Protein LCR25),Putative defensin-like protein 160 (Putative low-molecular-weight cysteine-rich protein 26) (Protein LCR26) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:2118239;,locus:1009023313;,locus:2118224; AT4G29300,AT4G29305,AT4G29290 Low-molecular-weight cysteine-rich NA NA NA NA NA NA NA ENOG411EIP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 12-2,Putative germin-like protein 12-4,Germin-like protein 12-1,Putative germin-like protein 12-3,Os12g0155000 protein Q2QXJ2,Q2QXJ0,Q2QXJ4,Q2QXJ1,A0A0P0Y710 GL122_ORYSJ,GL124_ORYSJ,GL121_ORYSJ,GL123_ORYSJ,A0A0P0Y710_ORYSJ Os12g0154800 LOC_Os12g05860 OsJ_033898,Os12g0155000 LOC_Os12g05880 OsJ_033900,Os12g0154700 LOC_Os12g05840 OsJ_033897,Os12g0154900 LOC_Os12g05870 OsJ_033899 OsJ_35265,Os12g0155000 OSNPB_120155000 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E7X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0281700 protein Q6Z352 Q6Z352_ORYSJ Os07g0281700 Os07g0281700 OsJ_23847 OSNPB_070281700 P0557D09.30 ENOG411E7X1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0674900 protein Q10FA7 Q10FA7_ORYSJ Os03g0674900 LOC_Os03g47160 OSNPB_030674900 ENOG411E7X3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr NOI protein (Os09g0253000 protein) Q6K3Y6 Q6K3Y6_ORYSJ Os09g0253000 OSNPB_090253000 P0574F11.33 ENOG411E7X4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABA/WDS induced protein NA NA NA NA NA NA NA ENOG411E7X5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0530200 protein A0A0P0WCS2 A0A0P0WCS2_ORYSJ Os04g0530200 OSNPB_040530200 ENOG411E7X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7X7 REM20 Q8LAV5 REM20_ARATH B3 domain-containing protein REM20 (Protein REPRODUCTIVE MERISTEM 20) 32618 B3 domain-containing protein REM20 (Protein REPRODUCTIVE MERISTEM 20) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2083921; AT3G53310 B3 domain-containing protein NA NA NA NA NA NA NA ENOG411E7X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0436000 protein A0A0N7KJ34 A0A0N7KJ34_ORYSJ Os04g0436000 OSNPB_040436000 ENOG411E7XP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E7XQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family Os01g0178850 protein A0A0P0UZ06 A0A0P0UZ06_ORYSJ Os01g0178850 OSNPB_010178850 ENOG411E7XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7XU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411E7XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0552800 protein) (cDNA clone:J023022C08, full insert sequence) Q2QNU8 Q2QNU8_ORYSJ Os12g0552800 LOC_Os12g36680 Os12g0552800 OSNPB_120552800 ENOG411E7XW Q6GKX8,Q8GYF1,F4I861 Q6GKX8_ARATH,Q8GYF1_ARATH,F4I861_ARATH At1g09645 (Transmembrane protein) (Uncharacterized protein At1g09645),Transmembrane protein (Uncharacterized protein At1g57760/T8L23_22),Transmembrane protein 12014,11944,13174 At1g09645 (Transmembrane protein) (Uncharacterized protein At1g09645),Transmembrane protein (Uncharacterized protein At1g57760/T8L23_22),Transmembrane protein integral component of membrane [GO:0016021] locus:504956278;,locus:4010713557; AT1G09645,AT1G57765 NA Os05g0419600 protein (cDNA, clone: J100085D10, full insert sequence) Q60DW0 Q60DW0_ORYSJ Os05g0419600 OsJ_18579 OSNPB_050419600 P0426G01.12 ENOG411E7XX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Imidazoleglycerolphosphate dehydratase OSJNBa0058K23.15 protein (Os04g0619800 protein) Q7XTT8 Q7XTT8_ORYSJ Os04g0619800 Os04g0619800 OSJNBa0058K23.15 OSNPB_040619800 ENOG411E7XY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytosine specific DNA methyltransferase replication foci domain NA NA NA NA NA NA NA ENOG411E7XA Q84RF6 Q84RF6_ARATH Cotton fiber protein (Uncharacterized protein At2g42180/T24P15.9) 19516 Cotton fiber protein (Uncharacterized protein At2g42180/T24P15.9) locus:2059984; AT2G42180 NA Os09g0279200 protein Q6H5H3 Q6H5H3_ORYSJ Os09g0279200 Os09g0279200 OsJ_28652 OSNPB_090279200 P0701E06.31 ENOG411E7XB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411E7XC Q84J91 Q84J91_ARATH Fantom protein (Uncharacterized protein At5g24500) 37416 Fantom protein (Uncharacterized protein At5g24500) locus:2153974; AT5G24500 NA NA NA NA NA NA NA NA ENOG411E7XD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0112000 protein A0A0P0VDW9 A0A0P0VDW9_ORYSJ Os02g0112000 OSNPB_020112000 ENOG411E7XE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Serine-rich Os03g0420400 protein,Os08g0167249 protein A0A0P0VYU3,A0A0P0XCC3 A0A0P0VYU3_ORYSJ,A0A0P0XCC3_ORYSJ Os03g0420400 OSNPB_030420400,Os08g0167249 OSNPB_080167249 ENOG411E7XF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like NA NA NA NA NA NA NA ENOG411E7XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os06g0125200 protein (cDNA clone:J033087E11, full insert sequence),Os06g0153100 protein (Fragment),Os06g0251500 protein Q0DF11,A0A0N7KLJ7,A0A0P0WUN0 Q0DF11_ORYSJ,A0A0N7KLJ7_ORYSJ,A0A0P0WUN0_ORYSJ Os06g0125200 Os06g0125200 OSNPB_060125200,Os06g0153100 OSNPB_060153100,Os06g0251500 OSNPB_060251500 ENOG411E7XJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E7XK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7XM MGN6.21,MKD10.60 Q9FHZ4,Q9FKR1 Q9FHZ4_ARATH,Q9FKR1_ARATH ABA-inducible protein-like (At5g53820) (Late embryogenesis abundant protein (LEA) family protein),At5g38760 (Late embryogenesis abundant protein (LEA) family protein) (Pollen coat protein-like) 7029,7052 ABA-inducible protein-like (At5g53820) (Late embryogenesis abundant protein (LEA) family protein),At5g38760 (Late embryogenesis abundant protein (LEA) family protein) (Pollen coat protein-like) locus:2164012;,locus:2166630; AT5G53820,AT5G38760 NA NA NA NA NA NA NA NA ENOG411E7XN Q9SFD9 Q9SFD9_ARATH RING/U-box superfamily protein (T26F17.19) 22877 RING/U-box superfamily protein (T26F17.19) locus:2201158; AT1G21960 zinc finger C3HC4 type domain containing protein Os12g0148100 protein,Os11g0149500 protein (Zinc finger, C3HC4 type family protein),Os12g0148000 protein (Zinc finger, C3HC4 type family protein) Q2QXQ0,Q53PY2,Q2QXQ1 Q2QXQ0_ORYSJ,Q53PY2_ORYSJ,Q2QXQ1_ORYSJ Os12g0148100 LOC_Os12g05280 OsJ_35221 OSNPB_120148100,Os11g0149500 LOC_Os11g05200 OsJ_32977 OSNPB_110149500,Os12g0148000 LOC_Os12g05270 OSNPB_120148000 ENOG411EDAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDAS O80443 GDL46_ARATH GDSL esterase/lipase At2g38180 (EC 3.1.1.-) (Extracellular lipase At2g38180) 3.1.1.- 35405 GDSL esterase/lipase At2g38180 (EC 3.1.1.-) (Extracellular lipase At2g38180) extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] locus:2042862; AT2G38180 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411EDAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EDAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA NA NA NA NA NA NA NA ENOG411EEY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein domain (DUF2415) NA NA NA NA NA NA NA ENOG411EEY0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methionine biosynthesis protein MetW NA NA NA NA NA NA NA ENOG411EEY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEY5 CML6 Q9ZR02 CML6_ARATH Calmodulin-like protein 6 FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 17590 Calmodulin-like protein 6 cytoplasm [GO:0005737]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; response to cold [GO:0009409] locus:2125551; AT4G03290 Pfam:efhand NA NA NA NA NA NA NA ENOG411EEY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family E3 ubiquitin-protein ligase (EC 2.3.2.27),E3 ubiquitin-protein ligase (EC 2.3.2.27) (Fragment),Os01g0761900 protein A0A0P0UXQ7,A0A0P0UXR5,A0A0P0V8L3 A0A0P0UXQ7_ORYSJ,A0A0P0UXR5_ORYSJ,A0A0P0V8L3_ORYSJ Os01g0125100 OSNPB_010125100,Os01g0125500 OSNPB_010125500,Os01g0761900 OSNPB_010761900 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411EEY7 OFP10 Q9FMS7 OFP10_ARATH Transcription repressor OFP10 (Ovate family protein 10) (AtOFP10) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21886836}. FUNCTION: Transcriptional repressor that may regulate multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP10 have no visible phenotype. {ECO:0000305|PubMed:21886836}. 22271 Transcription repressor OFP10 (Ovate family protein 10) (AtOFP10) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, cauline leaves, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2176297; AT5G22240 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411EEY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0133600 protein (cDNA clone:001-124-G03, full insert sequence) (cDNA clone:J033073K09, full insert sequence) Q6YYD7 Q6YYD7_ORYSJ Os08g0133600 OsJ_25948 OSNPB_080133600 P0509D04.19 P0680F05.12 ENOG411EEY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: WW domain containing protein Os11g0294400 protein (Fragment) A0A0P0Y1D2,A0A0P0Y1C4 A0A0P0Y1D2_ORYSJ,A0A0P0Y1C4_ORYSJ Os11g0294400 OSNPB_110294400 ENOG411EEYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0152200 protein,Os01g0152100 protein Q9LGI3,A0A0P0UY63 Q9LGI3_ORYSJ,A0A0P0UY63_ORYSJ Os01g0152200 OsJ_00403 OSNPB_010152200 P0009G03.28 P0030H07.7,Os01g0152100 OSNPB_010152100 ENOG411EEYC O80643 O80643_ARATH At2g39560/F12L6.22 (Putative membrane lipoprotein) (Uncharacterized protein At2g39560) 25808 At2g39560/F12L6.22 (Putative membrane lipoprotein) (Uncharacterized protein At2g39560) integral component of membrane [GO:0016021] locus:2039767; AT2G39560 NA NA NA NA NA NA NA NA ENOG411EEYB AGL87,AGAMOUS-like 87 Q7X9H1,Q9SKA0 Q7X9H1_ARATH,Q9SKA0_ARATH AGAMOUS-like 87 (MADS-box protein AGL87),AGAMOUS-like 87 (At1g22590) (F12K8.7 protein) (Uncharacterized protein At1g22590/F12K8_31) 18703,14228 AGAMOUS-like 87 (MADS-box protein AGL87),AGAMOUS-like 87 (At1g22590) (F12K8.7 protein) (Uncharacterized protein At1g22590/F12K8_31) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2009457; AT1G22590 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EEYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DOMON domain Os01g0893700 protein A0A0P0VBI6 A0A0P0VBI6_ORYSJ Os01g0893700 OSNPB_010893700 ENOG411EEYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411EEYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EEYI Q29PZ2 Q29PZ2_ARATH At3g03170 17266 At3g03170 locus:2097760; AT3G03170 Inherit from KOG: Rna binding protein NA NA NA NA NA NA NA ENOG411EEYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EEYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEK C terminal domain NA NA NA NA NA NA NA ENOG411EEYM RAB28 Q9SA57,A0A1P8ATY1 LEA3_ARATH,A0A1P8ATY1_ARATH Late embryogenesis abundant protein 3 (LEA 3),Responsive to abscisic acid 28 FUNCTION: LEA proteins are late embryonic proteins abundant in higher plant seed embryos. The function of those proteins is not known. {ECO:0000305}. 18942,14248 Late embryogenesis abundant protein 3 (LEA 3),Responsive to abscisic acid 28 cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; cellular ion homeostasis [GO:0006873]; response to lithium ion [GO:0010226]; seed germination [GO:0009845] locus:2007529; AT1G03120 Seed maturation protein NA NA NA NA NA NA NA ENOG411EEYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar type H -ATPase proteolipid subunit NA NA NA NA NA NA NA ENOG411EEYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: microtubule associated serine threonine kinase NA NA NA NA NA NA NA ENOG411EEYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EEYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EEYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1442) NA NA NA NA NA NA NA ENOG411EEYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family NA NA NA NA NA NA NA ENOG411EEYY DIR11 Q67YM6 DIR11_ARATH Dirigent protein 11 (AtDIR11) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 21288 Dirigent protein 11 (AtDIR11) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2017689; AT1G22900 Dirigent-like protein NA NA NA NA NA NA NA ENOG411EEYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kinesin family member NA NA NA NA NA NA NA ENOG411E31C RPL14A,RPL14B Q9SIM4,Q9T043 RL141_ARATH,RL142_ARATH 60S ribosomal protein L14-1,60S ribosomal protein L14-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15506,15505 60S ribosomal protein L14-1,60S ribosomal protein L14-2 cytosolic large ribosomal subunit [GO:0022625]; endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit biogenesis [GO:0042273]; translation [GO:0006412],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; endoplasmic reticulum [GO:0005783]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit biogenesis [GO:0042273]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2054764;,locus:2136501; AT2G20450,AT4G27090 60S ribosomal protein Os02g0622300 protein (Putative hydroxyproline-rich glycoprotein 1) (Ribosomal protein L14),OSJNBb0070J16.13 protein (OSJNBb0072M01.9 protein) (Os04g0515300 protein) (cDNA clone:001-044-H03, full insert sequence) (cDNA clone:J033050G01, full insert sequence) Q6K1Q6,Q7X752 Q6K1Q6_ORYSJ,Q7X752_ORYSJ OsRPL14 Os02g0622300 OJ1234_B11.29 OSJNOa283G08.1 OSNPB_020622300,Os04g0515300 OsJ_15457 OSJNBb0070J16.13 OSJNBb0072M01.9 OSNPB_040515300 ENOG411E31G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411E31F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0233000 protein (Fragment) A0A0N7KKD7 A0A0N7KKD7_ORYSJ Os05g0233000 OSNPB_050233000 ENOG411E31K HSP21 P31170 HS25P_ARATH Heat shock protein 21, chloroplastic (25.3 kDa heat shock protein, chloroplastic) (AtHsp25.3) DISRUPTION PHENOTYPE: Ivory phenotype seedling under heat stress (30 degrees Celsius). Decrease in transcript levels of class I genes, but enhanced expression of class III genes (e.g. accD, rpoB and clpP) after heat shock. {ECO:0000269|PubMed:23922206}. FUNCTION: Chaperone protein required for seedling and chloroplast development under heat stress, probably by maintaining plastid-encoded RNA polymerase (PEP)-dependent transcription. {ECO:0000269|PubMed:23922206}. 25344 Heat shock protein 21, chloroplastic (25.3 kDa heat shock protein, chloroplastic) (AtHsp25.3) chloroplast nucleoid [GO:0042644]; chloroplast organization [GO:0009658]; regulation of transcription, DNA-templated [GO:0006355]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Confined to pollen grains of budding flowers. {ECO:0000269|PubMed:23922206}. locus:2137762; AT4G27670 heat shock protein 26.7 kDa heat shock protein, chloroplastic (OsHsp26.7),Os03g0835700 protein Q10P60,A0A0N7KIC7 HS26P_ORYSJ,A0A0N7KIC7_ORYSJ HSP26.7 Os03g0245800 LOC_Os03g14180 OsJ_10121,Os03g0835700 OSNPB_030835700 ENOG411E31J Q8L7M6,F4IXN1 Q8L7M6_ARATH,F4IXN1_ARATH Acid phosphatase/vanadium-dependent haloperoxidase-related protein (Uncharacterized protein At3g21620),Acid phosphatase/vanadium-dependent haloperoxidase-related protein 18470,12983 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (Uncharacterized protein At3g21620),Acid phosphatase/vanadium-dependent haloperoxidase-related protein integral component of membrane [GO:0016021]; peroxidase activity [GO:0004601] locus:2089950; AT3G21610 Divergent PAP2 family NA NA NA NA NA NA NA ENOG411E31I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411E31H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os08g0338000 protein (cDNA clone:J013152M15, full insert sequence) Q6ZC86 Q6ZC86_ORYSJ Os08g0338000 Os08g0338000 OsJ_26952 OSNPB_080338000 P0702G08.10 ENOG411E31M Q9M089 Q9M089_ARATH At4g31130 (Keratin-associated protein (DUF1218)) (Uncharacterized protein AT4g31130) 20753 At4g31130 (Keratin-associated protein (DUF1218)) (Uncharacterized protein AT4g31130) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2126281; AT4G31130 Protein of unknown function (DUF1218) Os05g0121000 protein (cDNA clone:001-006-A10, full insert sequence) (cDNA clone:J023090B22, full insert sequence),Os05g0121100 protein (Fragment),Os05g0121050 protein Q60F49,A0A0P0WHL5,A0A0P0WHA8 Q60F49_ORYSJ,A0A0P0WHL5_ORYSJ,A0A0P0WHA8_ORYSJ Os05g0121000 OJ1001_G01.3 OSNPB_050121000,Os05g0121100 OSNPB_050121100,Os05g0121050 OSNPB_050121050 ENOG411E31S Q9SJQ4,Q84WY5 Q9SJQ4_ARATH,Q84WY5_ARATH Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g36540),Haloacid dehalogenase-like hydrolase family protein (Uncharacterized protein At2g36550/F1O11.18) 28163,16088 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g36540),Haloacid dehalogenase-like hydrolase family protein (Uncharacterized protein At2g36550/F1O11.18) phosphoprotein phosphatase activity [GO:0004721] locus:2044862;,locus:2044868; AT2G36540,AT2G36550 NLI interacting factor-like phosphatase NA NA NA NA NA NA NA ENOG411E31W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein Os08g0195000 protein,Os11g0637300 protein,Os08g0191300 protein (Fragment),Os08g0194350 protein,Os08g0194100 protein,Os08g0195200 protein A0A0P0XCS9,A0A0P0Y4Y4,A0A0P0XCP1,A0A0N7KPE6,A0A0P0XD04,A0A0P0XCS8 A0A0P0XCS9_ORYSJ,A0A0P0Y4Y4_ORYSJ,A0A0P0XCP1_ORYSJ,A0A0N7KPE6_ORYSJ,A0A0P0XD04_ORYSJ,A0A0P0XCS8_ORYSJ Os08g0195000 OSNPB_080195000,Os11g0637300 OSNPB_110637300,Os08g0191300 OSNPB_080191300,Os08g0194350 OSNPB_080194350,Os08g0194100 OSNPB_080194100,Os08g0195200 OSNPB_080195200 ENOG411E31V Q9LNE8,Q8L7G5 Q9LNE8_ARATH,Q8L7G5_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (T21E18.3 protein) (Uncharacterized protein At1g05970),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g05970) 22911,22654 RNA-binding (RRM/RBD/RNP motifs) family protein (T21E18.3 protein) (Uncharacterized protein At1g05970),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g05970) nucleic acid binding [GO:0003676] locus:2198876; AT1G05970 Inherit from NOG: RNA-binding region (RNP1 Os07g0256200 protein Q7EZ61 Q7EZ61_ORYSJ P0458G06.117 Os07g0256200 OSNPB_070256200 ENOG411E31U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zipper protein Homeobox-leucine zipper protein HOX24 (HD-ZIP protein HOX24) (Homeodomain transcription factor HOX24) (OsHox24) Q6H6S3 HOX24_ORYSJ HOX24 Os02g0649300 LOC_Os02g43330 P0048B08.20 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E31T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily OSJNBa0006B20.3 protein (Os04g0436100 protein) (cDNA clone:J023132I18, full insert sequence) Q7XV63 Q7XV63_ORYSJ Os04g0436100 OSJNBa0006B20.3 OSNPB_040436100 ENOG411E31Z BRG3,BRG2 Q9LDD1,F4IDI6,A0A1P8AV99 BRG3_ARATH,BRG2_ARATH,A0A1P8AV99_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRG3),Probable BOI-related E3 ubiquitin-protein ligase 2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRG2),Zinc ion binding protein DISRUPTION PHENOTYPE: No visible phenotype. Decreased resistance to B.cinerea and increased cell death upon pathogen infection. Boi, brg1, brg2 and brg3 quadruple mutant shows a higher GA signaling resulting in a higher seed germination in the presence of paclobutrazol, precocious juvenile-to-adult phase transition and early flowering. {ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23482857}. FUNCTION: Probable E3 ubiquitin-protein ligase. Has no effect on the stability of the DELLA proteins. {ECO:0000269|PubMed:23482857}. PATHWAY: Protein degradation; proteasomal ubiquitin-dependent pathway. 2.3.2.27 37709,40085,37175 Probable BOI-related E3 ubiquitin-protein ligase 3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRG3),Probable BOI-related E3 ubiquitin-protein ligase 2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRG2),Zinc ion binding protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of programmed cell death [GO:0043067],metal ion binding [GO:0046872]; transferase activity [GO:0016740]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of programmed cell death [GO:0043067] locus:2089225;,locus:2207385; AT3G12920,AT1G79110 protein binding zinc ion binding Os03g0668500 protein,Os12g0631500 protein,Os03g0695000 protein Q0DPR5,Q2QLR5,A0A0P0W257 Q0DPR5_ORYSJ,Q2QLR5_ORYSJ,A0A0P0W257_ORYSJ Os03g0668500 OSNPB_030668500,Os12g0631500 LOC_Os12g43570 OSNPB_120631500,Os03g0695000 OSNPB_030695000 ENOG411E31Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase At5g03610-like NA NA NA NA NA NA NA ENOG411E313 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Coatomer WD associated region NA NA NA NA NA NA NA ENOG411E312 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VIT family Vacuolar iron transporter homolog 1 (Protein NODULIN-LIKE 1),Os02g0644200 protein (Fragment) Q6H658,A0A0P0VMB3 VITH1_ORYSJ,A0A0P0VMB3_ORYSJ Os02g0644200 LOC_Os02g43030 OJ1282_H11.20,Os02g0644200 OSNPB_020644200 FUNCTION: Probable vacuolar iron transporter that may be involved in the regulation of iron distribution throughout the plant. {ECO:0000250}. ENOG411E311 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0746700 protein) (cDNA clone:J013136N09, full insert sequence) Q94GP5 Q94GP5_ORYSJ OJ1124_H03.7 LOC_Os03g53520 Os03g0746700 OSNPB_030746700 ENOG411E310 Q9ZUC0,A0A1P8AT92 Q9ZUC0_ARATH,A0A1P8AT92_ARATH F5O8.30 protein (Nucleic acid-binding, OB-fold-like protein) (Uncharacterized protein At1g23750),Nucleic acid-binding, OB-fold-like protein 15127,11220 F5O8.30 protein (Nucleic acid-binding, OB-fold-like protein) (Uncharacterized protein At1g23750),Nucleic acid-binding, OB-fold-like protein locus:2034813; AT1G23750 Inherit from euNOG: DNA-binding protein-related NA NA NA NA NA NA NA ENOG411E317 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411E316 HSP17.4B Q9SYG1 HS174_ARATH 17.4 kDa class III heat shock protein (17.4 kDa heat shock protein 2) (AtHsp17.4B) 17363 17.4 kDa class III heat shock protein (17.4 kDa heat shock protein 2) (AtHsp17.4B) cytoplasm [GO:0005737]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542] locus:2014410; AT1G54050 kDa class III heat shock 18.6 kDa class III heat shock protein (18.6 kDa heat shock protein) (OsHsp18.6),Os02g0782500 protein,Os01g0257200 protein Q6K7E9,A0A0N7KG76,A0A0P0V0J3 HS186_ORYSJ,A0A0N7KG76_ORYSJ,A0A0P0V0J3_ORYSJ HSP18.6 Os02g0782500 LOC_Os02g54140 OJ1311_D08.6-1 OsJ_08623,Os02g0782500 OSNPB_020782500,Os01g0257200 OSNPB_010257200 ENOG411E315 RTNLB11,RTNLB10 Q9LT71,Q6NPD8,A0A178VGH9,A8MR23 RTNLK_ARATH,RTNLJ_ARATH,A0A178VGH9_ARATH,A8MR23_ARATH Reticulon-like protein B11 (AtRTNLB11),Reticulon-like protein B10 (AtRTNLB10),Reticulon-like protein 22420,23483,26571,25179 Reticulon-like protein B11 (AtRTNLB11),Reticulon-like protein B10 (AtRTNLB10),Reticulon-like protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2049077;,locus:2090609; AT3G19460,AT2G15280 Reticulon-like protein Reticulon-like protein Q7XR59 Q7XR59_ORYSJ Os04g0670000 Os04g0670000 OsJ_16567 OSJNBa0043A12.26 OSNPB_040670000 ENOG411E314 PSA2 O64750 PSA2_ARATH Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic (AtPSA2) (Protein EMBRYO SAC DEVELOPMENT ARREST 3) DISRUPTION PHENOTYPE: Embryonic lethality due to female gametophyte development arrest at two-nuclear stage (PubMed:15634699). Seedling lethality when homozygous. Pale green leaf, variegated leaf and slow growing phenotype when grown on MS medium supplemented with sucrose (PubMed:25228689, PubMed:27047527). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:25228689, ECO:0000269|PubMed:27047527}. FUNCTION: Involved in female gametophyte development. Required for embryo sac development (PubMed:15634699). Nuclear genome-encoded factor required for the accumulation of photosystem I (PSI) during plant development (PubMed:25228689). Required for light acclimation and chloroplast development (PubMed:27047527). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:25228689, ECO:0000269|PubMed:27047527}. 19943 Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic (AtPSA2) (Protein EMBRYO SAC DEVELOPMENT ARREST 3) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; megagametogenesis [GO:0009561]; photosystem I assembly [GO:0048564]; thylakoid membrane organization [GO:0010027] TISSUE SPECIFICITY: Expressed in leaves and flowers. Expressed at low levels in siliques. {ECO:0000269|PubMed:27047527}. locus:2044812; AT2G34860 NA Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic Q6YUA8 PSA22_ORYSJ PSA2 Os08g0463900 LOC_Os08g36140 B1111C03.36 B1116H04.24 OsJ_27600 FUNCTION: Nuclear genome-encoded factor required for the accumulation of photosystem I (PSI) during plant development. {ECO:0000250|UniProtKB:A0A1D6KL43}. ENOG411E319 MBF1B,MBF1A Q9LXT3,Q9SJI8 MBF1B_ARATH,MBF1A_ARATH Multiprotein-bridging factor 1b,Multiprotein-bridging factor 1a FUNCTION: Transcriptional coactivator that stimulates transcriptional activity by bridging regulatory proteins and TBP, thereby recruiting TBP to promoters occupied by DNA-binding regulators. {ECO:0000250, ECO:0000269|PubMed:14988493}. 15582,15620 Multiprotein-bridging factor 1b,Multiprotein-bridging factor 1a cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription coactivator activity [GO:0003713]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleolus [GO:0005730]; mRNA binding [GO:0003729]; sequence-specific DNA binding [GO:0043565]; transcription coactivator activity [GO:0003713]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected only in seeds of 2-3 days after pollination (dap) siliques. {ECO:0000269|PubMed:15451167}.,DEVELOPMENTAL STAGE: Detected in some seeds from 3 days after pollination (dap) to 11 dap. {ECO:0000269|PubMed:15451167}. TISSUE SPECIFICITY: Expressed in leaves, roots, stems, petioles and shoots. Higher expression in flowers and siliques. Detected in leaf veins through development. {ECO:0000269|PubMed:14988493, ECO:0000269|PubMed:15451167}.,TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers, siliques and shoots. Detected only in anthers and some seeds in siliques. {ECO:0000269|PubMed:14988493, ECO:0000269|PubMed:15451167}. locus:2098994;,locus:2041509; AT3G58680,AT2G42680 Multiprotein-bridging factor Os08g0366100 protein (Putative ethylene-responsive transcriptional coactivator) (cDNA clone:001-041-F01, full insert sequence) (cDNA clone:J013060M10, full insert sequence) Q6ZAE3 Q6ZAE3_ORYSJ Os08g0366100 Os08g0366100 OsJ_27077 OSNPB_080366100 P0410E02.2 ENOG411E318 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA growth-regulating factor Growth-regulating factor 12 (OsGRF12) (Transcription activator GRF12),Growth-regulating factor 10 (OsGRF10) (Transcription activator GRF10) Q6AWX7,Q6EPP9 GRF12_ORYSJ,GRF10_ORYSJ GRF12 Os04g0574500 LOC_Os04g48510 OsJ_15856 OSJNBa0019K04.18,GRF10 Os02g0678800 LOC_Os02g45570 OSJNBb0005A04.34 P0663F07.10 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411EK19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EK13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os08g0157600 protein,Os08g0157600 protein (Fragment) Q0J7W9,A0A0N7KPA9,A0A0P0XC48 Q0J7W9_ORYSJ,A0A0N7KPA9_ORYSJ,A0A0P0XC48_ORYSJ Os08g0157600 Os08g0157600 OsJ_26106 OSNPB_080157600,Os08g0157600 OSNPB_080157600 ENOG411EK12 CHR28,CHR27 Q94BR5,Q9LHE4,A0A1I9LTA5,A0A1P8AWQ0,A0A1I9LTA7,A0A1I9LTA6 CHR28_ARATH,CHR27_ARATH,A0A1I9LTA5_ARATH,A0A1P8AWQ0_ARATH,A0A1I9LTA7_ARATH,A0A1I9LTA6_ARATH Helicase-like transcription factor CHR28 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 28) (Protein SNF2-RING-HELICASE-LIKE 2),Helicase-like transcription factor CHR27 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 27) (Protein SNF2-RING-HELICASE-LIKE 1),SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein FUNCTION: Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. May be involved in nucleosome positioning to form ordered nucleosome arrays on chromatin (PubMed:25420628). Associates with SUVR2 and functions redundantly with FRG1. Required for the efficient methylation of a broad range of RdDM target loci (PubMed:25425661). {ECO:0000269|PubMed:25420628, ECO:0000269|PubMed:25425661}.,FUNCTION: Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. May be involved in nucleosome positioning to form ordered nucleosome arrays on chromatin (PubMed:25420628). Associates with SUVR2 and functions redundantly with FRG2. Required for the efficient methylation of a broad range of RdDM target loci (PubMed:25425661). {ECO:0000269|PubMed:25420628, ECO:0000269|PubMed:25425661}. 3.6.4.- 108111,115475,105539,97203,87283,84509 Helicase-like transcription factor CHR28 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 28) (Protein SNF2-RING-HELICASE-LIKE 2),Helicase-like transcription factor CHR27 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 27) (Protein SNF2-RING-HELICASE-LIKE 1),SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; RNA-directed DNA methylation [GO:0080188]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872],ATP binding [GO:0005524]; helicase activity [GO:0004386] locus:2008096;,locus:2095360; AT1G50410,AT3G20010 SNF2 family N-terminal domain Os08g0180300 protein (Fragment) A0A0P0XCD6 A0A0P0XCD6_ORYSJ Os08g0180300 OSNPB_080180300 ENOG411EK11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HIRAN domain NA NA NA NA NA NA NA ENOG411EK10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EK17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EK16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase Os04g0213800 protein,Os11g0692500 protein (Fragment),Os11g0695800 protein,Os11g0691800 protein,Os11g0695000 protein (Fragment) A0A0P0W7G5,A0A0P0Y5L0,A0A0P0Y5T8,A0A0P0Y5V7,A0A0P0Y5I3 A0A0P0W7G5_ORYSJ,A0A0P0Y5L0_ORYSJ,A0A0P0Y5T8_ORYSJ,A0A0P0Y5V7_ORYSJ,A0A0P0Y5I3_ORYSJ Os04g0213800 OSNPB_040213800,Os11g0692500 OSNPB_110692500,Os11g0695800 OSNPB_110695800,Os11g0691800 OSNPB_110691800,Os11g0695000 OSNPB_110695000 ENOG411EK15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0392000 protein (Fragment) A0A0P0WLY1 A0A0P0WLY1_ORYSJ Os05g0392000 OSNPB_050392000 ENOG411EK14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EK1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotidyltransferase domain Os03g0210800 protein (Fragment) A0A0P0VUJ4 A0A0P0VUJ4_ORYSJ Os03g0210800 OSNPB_030210800 ENOG411EK1Y NRPD4 Q6DBA5 NRPD4_ARATH DNA-directed RNA polymerases IV and V subunit 4 (Protein RNA-DIRECTED DNA METHYLATION 2) (RNA polymerase II, Rpb4, core protein) DISRUPTION PHENOTYPE: No developmental phenotype, but reduced DNA methylation at RdDM target loci. {ECO:0000269|PubMed:19204117}. Decreased DNA methylation-J. Zhu-2008 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. Required for the de novo DNA methylation directed by the RdDM pathway. {ECO:0000269|PubMed:19110459, ECO:0000269|PubMed:19204117}. 22414 DNA-directed RNA polymerases IV and V subunit 4 (Protein RNA-DIRECTED DNA METHYLATION 2) (RNA polymerase II, Rpb4, core protein) DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; nucleus [GO:0005634]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleotide binding [GO:0000166]; DNA methylation on cytosine within a CHH sequence [GO:0010426]; RNA interference [GO:0016246]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in shoot meristematic region and in root tips. Detected in cotyledons, flowers and young leaves. {ECO:0000269|PubMed:19204117}. locus:2129825; AT4G15950 RNA polymerase Rpb4 NA NA NA NA NA NA NA ENOG411EK1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EK1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA repair protein endonuclease SAE2/CtIP C-terminus Os06g0613400 protein B9FU48 B9FU48_ORYSJ Os06g0613400 OsJ_21965 OSNPB_060613400 ENOG411EK1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0821900 protein (cDNA clone:J023080K14, full insert sequence) Q6K700 Q6K700_ORYSJ Os02g0821900 Os02g0821900 OJ1119_A01.11 OSNPB_020821900 P0474F11.26 ENOG411EK1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH dehydrogenase subunit 2 NA NA NA NA NA NA NA ENOG411EK1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os12g0636100 protein (TPR Domain containing protein, expressed),Os12g0634900 protein (Fragment) Q2QLM7,A0A0P0YCF1 Q2QLM7_ORYSJ,A0A0P0YCF1_ORYSJ LOC_Os12g43940 Os12g0636100 OSNPB_120636100,Os12g0634900 OSNPB_120634900 ENOG411EK1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0229200 protein (cDNA clone:001-015-C11, full insert sequence),Os07g0229100 protein (cDNA clone:J023041O17, full insert sequence),Os07g0228400 protein (cDNA clone:002-102-C08, full insert sequence),Os07g0228900 protein Q7EY36,Q8H2K3,Q7EY32,A0A0P0X3V6 Q7EY36_ORYSJ,Q8H2K3_ORYSJ,Q7EY32_ORYSJ,A0A0P0X3V6_ORYSJ Os07g0229200 OSJNBa0016A21.119 OSNPB_070229200,Os07g0229100 OSJNBa0016A21.117 OSNPB_070229100,OSJNBa0016A21.110-1 Os07g0228400 OSNPB_070228400,Os07g0228900 OSNPB_070228900 ENOG411EK1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANTH domain Os09g0448100 protein (Fragment),Os09g0447600 protein,Os09g0449600 protein,Os09g0449500 protein Q0J1D5,A0A0P0XNK5,A0A0P0XP42,A0A0P0XP32 Q0J1D5_ORYSJ,A0A0P0XNK5_ORYSJ,A0A0P0XP42_ORYSJ,A0A0P0XP32_ORYSJ Os09g0448100 Os09g0448100 OSNPB_090448100,Os09g0447600 OSNPB_090447600,Os09g0449600 OSNPB_090449600,Os09g0449500 OSNPB_090449500 ENOG411EK1M UGT76B1,NEDD1 Q9C768,B3H5K9 U76B1_ARATH,NEDD1_ARATH UDP-glycosyltransferase 76B1 (EC 2.4.1.-),Protein NEDD1 (Neural precursor cell expressed developmentally down-regulated protein 1 homolog) (Protein GCP-WD) DISRUPTION PHENOTYPE: Reduced rosette size, early leaf senescence, enhanced resistance to the biotrophic pathogen Pseudomonas syringae, increased susceptibility toward necrotrophic Alternaria brassicicola and constitutively elevated salicylic acid (SA) levels. {ECO:0000269|PubMed:22080599}.,DISRUPTION PHENOTYPE: Lethal when homozygous. Compromised asymmetric mitotic division in dividing microspores resulting in abortion of gametogenesis. {ECO:0000269|PubMed:19383896}. Male and female gametophyte defective; Embryo defective (inferred)-B. Liu-2009 FUNCTION: Glycosylates the amino acid-related molecules isoleucic acid (2-hydroxy-3-methylpentanoic acid) and valic acid (2-hydroxy-3-methylbutyric acid). Acts as a negative regulator of salicylic acid (SA)-dependent plant defense in the absence of pathogens and promotes the jasmonate (JA) response. Negatively influences the onset of senescence. {ECO:0000269|PubMed:22080599}.,FUNCTION: Regulates microtubules organization in a centrosome-independent manner. Required for the spindle to be positioned correctly and for the function of gamma-tubulin in organizing phragmoplast microtubules (PubMed:19383896). Component of active gamma-tubulin ring complexes (gamma-TuRCs) associated with cortical microtubules in interphase cells (PubMed:25438942). Mediates gamma-TuRC recruitment to the nucleation sites and is important for determining the ratio of branched to parallel nucleation (PubMed:25438942). May mediate the localization of GCP2 and GCP3 to the nuclear envelope (PubMed:19383896). {ECO:0000269|PubMed:19383896, ECO:0000269|PubMed:25438942}. ARA:AT3G11340-MONOMER; 2.4.1.- 50705,84757 UDP-glycosyltransferase 76B1 (EC 2.4.1.-),Protein NEDD1 (Neural precursor cell expressed developmentally down-regulated protein 1 homolog) (Protein GCP-WD) intracellular membrane-bounded organelle [GO:0043231]; glucosyltransferase activity [GO:0046527]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; salicylic acid glucosyltransferase (glucoside-forming) activity [GO:0052640]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; leaf senescence [GO:0010150]; metabolic process [GO:0008152],condensed chromosome kinetochore [GO:0000777]; kinetochore microtubule [GO:0005828]; nuclear envelope [GO:0005635]; phragmoplast [GO:0009524]; cell plate assembly [GO:0000919]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; positive regulation of cytokinesis [GO:0032467]; regulation of mitotic spindle organization [GO:0060236]; regulation of phragmoplast microtubule organization [GO:2000694] TISSUE SPECIFICITY: Expressed in roots, leaves, hydathodes, sepals and style. {ECO:0000269|PubMed:22080599}.,TISSUE SPECIFICITY: Expressed in root meristematic cells. {ECO:0000269|PubMed:19383896}. locus:2074738;,locus:2153629; AT3G11340,AT5G05970 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EK1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain Os07g0689950 protein,Os07g0690100 protein A0A0P0XB16,A0A0P0XAV3 A0A0P0XB16_ORYSJ,A0A0P0XAV3_ORYSJ Os07g0689950 OSNPB_070689950,Os07g0690100 OSNPB_070690100 ENOG411EK1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-utilising chromatin assembly and remodelling N-terminal Os02g0556900 protein (Putative DDT domain-containing protein) (cDNA clone:J013106B07, full insert sequence),Os02g0556900 protein (Fragment),Os04g0439300 protein (Fragment),Os04g0439400 protein Q6ZI78,A0A0P0VKC0,A0A0P0WAP3,A0A0P0WAJ7 Q6ZI78_ORYSJ,A0A0P0VKC0_ORYSJ,A0A0P0WAP3_ORYSJ,A0A0P0WAJ7_ORYSJ Os02g0556900 Os02g0556900 OJ1008_F08.22 OSNPB_020556900,Os02g0556900 OSNPB_020556900,Os04g0439300 OSNPB_040439300,Os04g0439400 OSNPB_040439400 ENOG411EK1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: serine threonine kinase 11 interacting protein Os03g0221800 protein A0A0P0VUV4 A0A0P0VUV4_ORYSJ Os03g0221800 OSNPB_030221800 ENOG411EK1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411DVMQ B9DHC9,Q8L7Y2,F4HTD0 B9DHC9_ARATH,Q8L7Y2_ARATH,F4HTD0_ARATH AT1G53800 protein (Muscle M-line assembly protein),At1g53800/T18A20_4 (Muscle M-line assembly protein),Muscle M-line assembly protein 64413,47189,64020 AT1G53800 protein (Muscle M-line assembly protein),At1g53800/T18A20_4 (Muscle M-line assembly protein),Muscle M-line assembly protein DNA binding [GO:0003677] locus:2197031; AT1G53800 NA NUMOD3 motif family protein, expressed (Os10g0198600 protein) Q109Y3 Q109Y3_ORYSJ LOC_Os10g12354 Os10g0198600 OsJ_30982 OSNPB_100198600 ENOG411DVMP SCL3 Q9LPR8 SCL3_ARATH Scarecrow-like protein 3 (AtSCL3) (GRAS family protein 5) (AtGRAS-5) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 54153 Scarecrow-like protein 3 (AtSCL3) (GRAS family protein 5) (AtGRAS-5) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; regulation of transcription, DNA-templated [GO:0006355]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. locus:2008086; AT1G50420 Scarecrow-like protein Os01g0948200 protein (SCARECROW-like),Os06g0476100 protein (Fragment),Os06g0211500 protein (Fragment),Os11g0141500 protein,Os11g0500050 protein (Fragment),Os12g0138100 protein,Os04g0493500 protein Q8GT03,A0A0P0WX06,A0A0N7KLR4,A0A0P0XYI1,A0A0P0Y2H3,A0A0P0Y6W1,A0A0P0WC33 Q8GT03_ORYSJ,A0A0P0WX06_ORYSJ,A0A0N7KLR4_ORYSJ,A0A0P0XYI1_ORYSJ,A0A0P0Y2H3_ORYSJ,A0A0P0Y6W1_ORYSJ,A0A0P0WC33_ORYSJ P0466H10.34 Os01g0948200 OSNPB_010948200,Os06g0476100 OSNPB_060476100,Os06g0211500 OSNPB_060211500,Os11g0141500 OSNPB_110141500,Os11g0500050 OSNPB_110500050,Os12g0138100 OSNPB_120138100,Os04g0493500 OSNPB_040493500 ENOG411DVMS GAD5 Q9LSH2,F4J6E0 DCE5_ARATH,F4J6E0_ARATH Glutamate decarboxylase 5 (GAD 5) (EC 4.1.1.15),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein FUNCTION: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis (By similarity). {ECO:0000250}. ARA:AT3G17760-MONOMER; 4.1.1.15 55770,21389 Glutamate decarboxylase 5 (GAD 5) (EC 4.1.1.15),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein plasmodesma [GO:0009506]; calmodulin binding [GO:0005516]; glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; glutamate metabolic process [GO:0006536],glutamate decarboxylase activity [GO:0004351]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; glutamate metabolic process [GO:0006536] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:18077464}. locus:2089779;,locus:2089759; AT3G17760,AT3G17720 glutamate Glutamate decarboxylase (EC 4.1.1.15) Q6YSB2,Q7XV14 Q6YSB2_ORYSJ,Q7XV14_ORYSJ P0104B02.16-2 Os08g0465800 OSNPB_080465800,Os04g0447400 OsJ_14957 OSJNBa0064H22.2 OSNPB_040447400 ENOG411DVMR AT3G23760.1 Q67YC9,Q8L9Q7 Y4141_ARATH,Q8L9Q7_ARATH Uncharacterized protein At4g14100,Transferring glycosyl group transferase 23930,22737 Uncharacterized protein At4g14100,Transferring glycosyl group transferase vacuole [GO:0005773],vacuole [GO:0005773]; transferase activity [GO:0016740] locus:2831548;,locus:2095218; AT4G14100,AT3G23760 NA Expressed protein (Os03g0850800 protein),Os07g0189800 protein (cDNA clone:J023112J01, full insert sequence),Os07g0189700 protein,Os08g0102800 protein (cDNA clone:J013068G21, full insert sequence) Q851Z1,Q6Z4D5,Q6Z4D6,Q69U62 Q851Z1_ORYSJ,Q6Z4D5_ORYSJ,Q6Z4D6_ORYSJ,Q69U62_ORYSJ LOC_Os03g63380 Os03g0850800 OsJ_13384 OSJNBa0015N08.10 OSNPB_030850800,Os07g0189800 OsJ_23393 OSJNBb0002L09.22 OSJNBb0084L07.34 OSNPB_070189800,Os07g0189700 Os07g0189700 OSJNBb0002L09.21 OSJNBb0084L07.33 OSNPB_070189700,Os08g0102800 Os08g0102800 OsJ_25731 OSNPB_080102800 P0015C07.20 ENOG411DVMU F4HQ70 F4HQ70_ARATH Cytochrome P450 superfamily protein 55468 Cytochrome P450 superfamily protein integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] locus:2206900; AT1G73340 abietadienol abietadienal NA NA NA NA NA NA NA ENOG411DVMT SIZ1 Q680Q4 SIZ1_ARATH E3 SUMO-protein ligase SIZ1 (EC 6.3.2.-) DISRUPTION PHENOTYPE: Dwarf phenotype. Heat-sensitive phenotype. Early flowering under short day. Elevated level of salicylic acid (SA), increased expression of pathogenesis-related (PR) genes and increased resistance to the bacterial pathogen P.syringae. ABA hypersensitivity during seed germination primary root growth. Exaggerated prototypical Pi-starvation responses, including increased root-shoot mass ratio and greater anthocyanin accumulation (PubMed:15894620). {ECO:0000269|PubMed:15894620, ECO:0000269|PubMed:17041025, ECO:0000269|PubMed:17163880, ECO:0000269|PubMed:17644626, ECO:0000269|PubMed:17905899, ECO:0000269|PubMed:18069938, ECO:0000269|PubMed:19276109}. dwarf. Increased salicyclic acid level.,Increased sensitivity to ABA. Application of .5micromolar ABA inhibits germination.,Substantially more pronounced prototypical Pi starvation root architecture responses than sos3-1 or wild-type seedlings. On Pi-limited medium mutant seedlings exhibit an inhibition of primary root growth an increase of lateral root development and length and higher root/shoot fresh weight ratio than wild-type. Enhanced resistance to Pseudomonas syringae DC3000. Smaller in stature. Impaired drought tolerance.,Decrease of macronutrients concentration in the MS salt formulation to 1/20X results in a substantial reduction in primary root growth.,Mutant grown in greenhouse or growth chamber exhibits reduced shoot and root biomass relative to the wild-type.,Mutant grown on Pi-deficient medium for 25 days accumulate more anthocyanins than wild-type.,Suppression of NaCl sensitivity of sos3-1 seedlings. Sensitive to phosphate starvation-P. Hasegawa-2005 FUNCTION: E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses (PubMed:15894620). Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress-induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facilitates basal thermotolerance. Involved in freezing tolerance by mediating sumoylation of ICE1, a transcription activator of the cold signaling regulator CBF3/DREB1A. Acts as positive regulator of drought stress tolerance. Acts as floral repressor that promotes FLC expression by repressing FLD activity through sumoylation. Acts as negative regulator of abscisic acid (ABA) signaling through ABI5 sumoylation. Mediates sumoylation of SCE1, GTE3 and GTE5. {ECO:0000269|PubMed:15894620, ECO:0000269|PubMed:17041025, ECO:0000269|PubMed:17163880, ECO:0000269|PubMed:17416732, ECO:0000269|PubMed:17644626, ECO:0000269|PubMed:17905899, ECO:0000269|PubMed:18069938, ECO:0000269|PubMed:18502747, ECO:0000269|PubMed:19276109}. PATHWAY: Protein modification; protein sumoylation. R-ATH-5693565; 6.3.2.- 97034 E3 SUMO-protein ligase SIZ1 (EC 6.3.2.-) nuclear speck [GO:0016607]; nucleus [GO:0005634]; ligase activity [GO:0016874]; SUMO transferase activity [GO:0019789]; zinc ion binding [GO:0008270]; cell division [GO:0051301]; cell growth [GO:0016049]; cellular response to phosphate starvation [GO:0016036]; defense response [GO:0006952]; detection of phosphate ion [GO:0010247]; developmental growth [GO:0048589]; embryo sac development [GO:0009553]; heat acclimation [GO:0010286]; negative regulation of flower development [GO:0009910]; negative regulation of systemic acquired resistance [GO:0010113]; plant ovule development [GO:0048481]; pollen tube guidance [GO:0010183]; protein sumoylation [GO:0016925]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of growth [GO:0040008]; regulation of nitrate assimilation [GO:0090352]; regulation of response to water deprivation [GO:2000070]; regulation of salicylic acid metabolic process [GO:0010337]; response to freezing [GO:0050826]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17905899}. locus:2175148; AT5G60410 E3 SUMO-protein ligase E3 SUMO-protein ligase SIZ2 (EC 2.3.2.-) (E3 SUMO-protein transferase SIZ2),E3 SUMO-protein ligase SIZ1 (EC 2.3.2.-) (E3 SUMO-protein transferase SIZ1),Os07g0440800 protein Q6ASW7,Q6L4L4,A0A0P0X5D5 SIZ2_ORYSJ,SIZ1_ORYSJ,A0A0P0X5D5_ORYSJ SIZ2 Os03g0719100 LOC_Os03g50980 B1377B10.3 OsJ_12369,SIZ1 Os05g0125000 LOC_Os05g03430 OSJNBb0079L11.3,Os07g0440800 OSNPB_070440800 FUNCTION: Probable SUMO E3 ligase that may regulate Pi starvation responses. {ECO:0000250}. ENOG411DVMW A0A1P8BE11,F4KG91,F4KG92 A0A1P8BE11_ARATH,F4KG91_ARATH,F4KG92_ARATH RabGAP/TBC domain-containing protein R-ATH-8854214; 78317,79691,77670 RabGAP/TBC domain-containing protein integral component of membrane [GO:0016021],cytosol [GO:0005829]; endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2149604; AT5G52580 TBC1 domain family member GTPase activating protein-like (Os02g0709800 protein) (cDNA clone:J013162A17, full insert sequence) Q5SMT0 Q5SMT0_ORYSJ Os02g0709800 OJ1311_H06.9 OsJ_08107 OSNPB_020709800 ENOG411DVMV HRD1A,HRD1B,Hrd1B Q9LW77,Q6NPT7,A0A1P8ASM3,A0A1P8ASN3,A0A1P8ASL9,B3H675,Q27GM7 HRD1A_ARATH,HRD1B_ARATH,A0A1P8ASM3_ARATH,A0A1P8ASN3_ARATH,A0A1P8ASL9_ARATH,B3H675_ARATH,Q27GM7_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A (AtHrd1A) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase HRD1A),ERAD-associated E3 ubiquitin-protein ligase HRD1B (AtHrd1B) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase HRD1B),RING/U-box superfamily protein Endoplasmic reticulum (ER)-associated degradation process is blocked in hrd1a hrd1b double mutant. FUNCTION: Probable component of the HRD1 ubiquitin ligase complex that mediates the rapid degradation of misfolded endoplasmic reticulum (ER) proteins, a process called ER-associated degradation (ERAD). Targets the misfolded LRR receptor kinase BRI1. Functions redundantly with HRD3B. {ECO:0000269|PubMed:21187394}.,FUNCTION: Probable component of the HRD1 ubiquitin ligase complex that mediates the rapid degradation of misfolded endoplasmic reticulum (ER) proteins, a process called ER-associated degradation (ERAD). Targets the misfolded LRR receptor kinase BRI1. Functions redundantly with HRD3A. {ECO:0000269|PubMed:21187394}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. R-ATH-5358346;R-ATH-901032; 2.3.2.27 56037,52127,49470,29463,36040,43939,31590 ERAD-associated E3 ubiquitin-protein ligase HRD1A (AtHrd1A) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase HRD1A),ERAD-associated E3 ubiquitin-protein ligase HRD1B (AtHrd1B) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase HRD1B),RING/U-box superfamily protein Derlin-1 retrotranslocation complex [GO:0036513]; endoplasmic reticulum quality control compartment [GO:0044322]; Hrd1p ubiquitin ligase complex [GO:0000836]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-specific protease binding [GO:1990381]; unfolded protein binding [GO:0051082]; endoplasmic reticulum unfolded protein response [GO:0030968]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; ubiquitin-dependent ERAD pathway [GO:0030433],Derlin-1 retrotranslocation complex [GO:0036513]; endoplasmic reticulum quality control compartment [GO:0044322]; Hrd1p ubiquitin ligase complex [GO:0000836]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-specific protease binding [GO:1990381]; unfolded protein binding [GO:0051082]; endoplasmic reticulum unfolded protein response [GO:0030968]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; ubiquitin-dependent ERAD pathway [GO:0030433],integral component of membrane [GO:0016021] locus:2093422;,locus:2014993; AT3G16090,AT1G65040 E3 ubiquitin-protein ligase synoviolin-like ERAD-associated E3 ubiquitin-protein ligase HRD1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase HRD1) Q5Z880 HRD1_ORYSJ HRD1 Os06g0301000 LOC_Os06g19680 OJ1217_C01.4 P0501G08.42 FUNCTION: Probable component of the HRD1 ubiquitin ligase complex that mediates the rapid degradation of misfolded endoplasmic reticulum (ER) proteins, a process called ER-associated degradation (ERAD). {ECO:0000250|UniProtKB:Q9LW77}. ENOG411DVMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0646600 protein,Os09g0266100 protein (cDNA clone:J033082C15, full insert sequence),Expressed protein (Os10g0327800 protein) (cDNA clone:J023123E13, full insert sequence),Os09g0246700 protein,Os07g0646300 protein,Os07g0649600 protein (Fragment),Os07g0645900 protein,Os12g0228350 protein,Os09g0446950 protein Q7XIQ6,Q67TV3,Q339V3,Q0J390,Q7EYL6,A0A0P0X9N7,A0A0P0X9P9,A0A0P0Y8I8,A0A0P0X9E6,A0A0P0XP13 Q7XIQ6_ORYSJ,Q67TV3_ORYSJ,Q339V3_ORYSJ,Q0J390_ORYSJ,Q7EYL6_ORYSJ,A0A0P0X9N7_ORYSJ,A0A0P0X9P9_ORYSJ,A0A0P0Y8I8_ORYSJ,A0A0P0X9E6_ORYSJ,A0A0P0XP13_ORYSJ OJ1316_A04.102-1 P0503D09.119-1 Os07g0646600 OSNPB_070646600,B1012G11.38-1 Os09g0266100 OSNPB_090266100,Os10g0327800 LOC_Os10g18070 Os10g0327800 OSNPB_100327800,Os09g0246700 Os09g0246700 OSNPB_090246700,P0503D09.116-1 Os07g0646300 OSNPB_070646300,Os07g0649600 OSNPB_070649600,Os07g0645900 OSNPB_070645900,Os12g0228350 OSNPB_120228350,Os07g0646300 OSNPB_070646300,Os09g0446950 OSNPB_090446950 ENOG411DVMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase Patatin-like protein 2 (OsPLP2) (EC 3.1.1.-),Patatin (EC 3.1.1.-) Q6ZJD3,A0A0P0XHC6 PLP2_ORYSJ,A0A0P0XHC6_ORYSJ PLP2 Os08g0477500 LOC_Os08g37250 OJ1666_A04.9 OsJ_27671,Os08g0477500 OSNPB_080477500 FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Hydrolyzes phospholipids as well as galactolipids. May play a role in disease resistance (By similarity). {ECO:0000250}.,FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411DVMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Putative cyclin-dependent kinase F-2 (CDKF;2) (EC 2.7.11.22) (EC 2.7.11.23),Os02g0514800 protein Q2QSL4,A0A0P0VJM3 CDKF2_ORYSJ,A0A0P0VJM3_ORYSJ CDKF-2 Os12g0424700 LOC_Os12g23700,Os02g0514800 OSNPB_020514800 ENOG411DVMC TRM26 Q0WL38,F4INJ6 Q0WL38_ARATH,F4INJ6_ARATH RB1-inducible coiled-coil protein (Uncharacterized protein At2g17550),RB1-inducible coiled-coil protein 80197,89070 RB1-inducible coiled-coil protein (Uncharacterized protein At2g17550),RB1-inducible coiled-coil protein locus:2053883; AT2G17550 expressed protein Os03g0130700 protein (Fragment) A0A0P0VSM4,A0A0P0VSR3 A0A0P0VSM4_ORYSJ,A0A0P0VSR3_ORYSJ Os03g0130700 OSNPB_030130700 ENOG411DVMB PHYB,PHYD P14713,P42497,A0A1P8B2L0 PHYB_ARATH,PHYD_ARATH,A0A1P8B2L0_ARATH Phytochrome B (Protein LONG HYPOCOTYL 3) (Protein OUT OF PHASE 1),Phytochrome D,Phytochrome DISRUPTION PHENOTYPE: In oop1, defects in circadian timing with altered phase; early timing of the peak (acrophase) of multiple circadian rhythms such as leaf movement, CO(2) assimilation and light-induced gene expression. Strong photoperception defect in red light leading to long hypocotyls; this phenotype is increased when blue lights are combined to red lights. Increased sensitivity to SO(2). Elongated internodes before the transition to flowering when grown in short day conditions. {ECO:0000269|PubMed:12177480}. Induction of germination by treatment with red light is significantly inhibited.,Mutant does not show arsenic tolerance compared with WT controls.,The hypocotyl of the mutant is as short as that of WT in far-red light but is not inhibited in red light.,The randomization of hypocotyl growth orientation observed in WT that is induced through FR as a result of repression of gravitropism through phyA is enhanced in the phyB mutant.,Although a rapid decrease of ABA levels during the first 6h after red light treatment was observed as in wild type ABA levels in mutant seeds treated with far red/red light were higher than those in wild type.,The poor induction of germination by red light relative to wild type is efficiently restored by fluridone treatment.,Mutant seedlings displayed elongated hypocotyls and reduced chlorophyll accumulation when grown in white light.,Mutants also displayed elongated hypocotyls in continuous R but not in continuous FR.,When treated with a short pulse of far-red light after seed surface sterilization only half of the double mutant seeds germinated while majority of wild-type seeds did not.,Dramatically shorter hypocotyl compared to phyB-4 single mutant. Adult plants have curled leaves lacking petioles and irregularly shaped siliques. Pale green; Long hypocotyl and petioles; Short roots; Small leaves; Few rosette leaves; Tall inflorescence stems; Decreased branching; Few siliques; Early flowering independent of photoperiod; Long root hairs; Altered response to red:far-red light-J. Chory-1993 FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenetic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. Involved in the flowering time regulation. Involved in light-regulated circadian phase control that triggers stomatal aperture, stomatal conductance, and CO(2) assimilation. Implicated in red light perception, and, to a lower extent, in blue light signaling (PubMed:12177480). Regulates temperature responses by associating with the promoters of key target genes in a temperature-dependent manner and subsequently repressing their expression probably in a PIF4-dependent manner. Thermal timer that integrates temperature information over the course of the night (PubMed:27789797). {ECO:0000269|PubMed:12177480, ECO:0000269|PubMed:12468726, ECO:0000269|PubMed:15707897, ECO:0000269|PubMed:27789797}.,FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion.,FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. {ECO:0000256|PIRNR:PIRNR000084}. 129331,129268,125037 Phytochrome B (Protein LONG HYPOCOTYL 3) (Protein OUT OF PHASE 1),Phytochrome D,Phytochrome cytosol [GO:0005829]; nuclear body [GO:0016604]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; far-red light photoreceptor activity [GO:0031516]; identical protein binding [GO:0042802]; phosphorelay sensor kinase activity [GO:0000155]; promoter-specific chromatin binding [GO:1990841]; protein homodimerization activity [GO:0042803]; red light photoreceptor activity [GO:0031517]; red or far-red light photoreceptor activity [GO:0009883]; sequence-specific DNA binding [GO:0043565]; abscisic acid metabolic process [GO:0009687]; chromatin organization [GO:0006325]; circadian regulation of calcium ion oscillation [GO:0010617]; detection of visible light [GO:0009584]; entrainment of circadian clock [GO:0009649]; gravitropism [GO:0009630]; jasmonic acid mediated signaling pathway [GO:0009867]; negative regulation of transcription, DNA-templated [GO:0045892]; photomorphogenesis [GO:0009640]; photosynthesis [GO:0015979]; phototropism [GO:0009638]; protein-chromophore linkage [GO:0018298]; protein-phytochromobilin linkage [GO:0017012]; red light signaling pathway [GO:0010161]; regulation of defense response [GO:0031347]; regulation of photoperiodism, flowering [GO:2000028]; regulation of seed germination [GO:0010029]; response to cold [GO:0009409]; response to far red light [GO:0010218]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; response to low fluence red light stimulus [GO:0010202]; response to temperature stimulus [GO:0009266]; stomatal complex development [GO:0010374]; transcription, DNA-templated [GO:0006351]; transpiration [GO:0010148],nucleus [GO:0005634]; identical protein binding [GO:0042802]; phosphorelay sensor kinase activity [GO:0000155]; photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]; detection of visible light [GO:0009584]; protein-chromophore linkage [GO:0018298]; protein-tetrapyrrole linkage [GO:0017006]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay sensor kinase activity [GO:0000155]; photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]; detection of visible light [GO:0009584]; protein-chromophore linkage [GO:0018298]; protein-tetrapyrrole linkage [GO:0017006]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2005515;,locus:2005535; AT2G18790,AT4G16250 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region Phytochrome B,Os03g0309200 protein (Fragment) Q10MG9,A0A0P0VWK1,A0A0P0VWK6 PHYB_ORYSJ,A0A0P0VWK1_ORYSJ,A0A0P0VWK6_ORYSJ PHYB PHYB1 Os03g0309200 LOC_Os03g19590,Os03g0309200 OSNPB_030309200 FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. ENOG411DVMD PGIP1,PGIP2 Q9M5J9,Q9M5J8 PGIP1_ARATH,PGIP2_ARATH Polygalacturonase inhibitor 1 (Polygalacturonase-inhibiting protein 1) (PGIP-1),Polygalacturonase inhibitor 2 (Polygalacturonase-inhibiting protein 2) (PGIP-2) FUNCTION: Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi. {ECO:0000250|UniProtKB:P58822}. 36689,37068 Polygalacturonase inhibitor 1 (Polygalacturonase-inhibiting protein 1) (PGIP-1),Polygalacturonase inhibitor 2 (Polygalacturonase-inhibiting protein 2) (PGIP-2) cell wall [GO:0005618]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; polygalacturonase inhibitor activity [GO:0090353],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; polygalacturonase inhibitor activity [GO:0090353] locus:2169389;,locus:2169404; AT5G06860,AT5G06870 polygalacturonase inhibiting protein Os05g0104200 protein (Os05g0104300 protein),Os05g0104700 protein (Putative polygalacturonase inhibitor) (cDNA clone:002-149-A03, full insert sequence),Os05g0104600 protein (Putative polygalacturonase inhibitor) Q0DLF7,Q65XJ2,Q75M20 Q0DLF7_ORYSJ,Q65XJ2_ORYSJ,Q75M20_ORYSJ Os05g0104200 Os05g0104300 OSNPB_050104200,Os05g0104700 Os05g0104700 OSJNBb0035J08.1 OSNPB_050104700 P0668H12.16,Os05g0104600 Os05g0104600 OsJ_16801 OSNPB_050104600 P0668H12.15 ENOG411DVMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Squamosa promoter-binding-like protein Squamosa promoter-binding-like protein 16,Squamosa promoter-binding-like protein 18,Os02g0445200 protein Q6YZE8,Q0J0K1,A0A0N7KF82 SPL16_ORYSJ,SPL18_ORYSJ,A0A0N7KF82_ORYSJ SPL16 Os08g0531600 LOC_Os08g41940 P0702E04.9,SPL18 Os09g0507100 LOC_Os09g32944,Os02g0445200 OSNPB_020445200 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411DVMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoglycerate mutase Os06g0109000 protein,Os10g0202200 protein Q0DF86,A0A0P0XSN6 Q0DF86_ORYSJ,A0A0P0XSN6_ORYSJ Os06g0109000 Os06g0109000 OSNPB_060109000,Os10g0202200 OSNPB_100202200 ENOG411DVM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os08g0552500 protein,Os08g0552333 protein,Os08g0553200 protein,Os08g0553400 protein,Os08g0552000 protein,Os08g0552100 protein,Os08g0552300 protein,Os08g0553300 protein,Os08g0553100 protein,Os08g0553000 protein (Fragment),Os08g0552400 protein Q6Z3I5,A3BVK3,Q6Z3G6,Q6Z3G4,Q6Z3H2,Q6Z3H1,Q0J3U8,Q6Z3G5,Q6Z3G7,A0A0P0XIQ5,A0A0P0XJL5 Q6Z3I5_ORYSJ,A3BVK3_ORYSJ,Q6Z3G6_ORYSJ,Q6Z3G4_ORYSJ,Q6Z3H2_ORYSJ,Q6Z3H1_ORYSJ,Q0J3U8_ORYSJ,Q6Z3G5_ORYSJ,Q6Z3G7_ORYSJ,A0A0P0XIQ5_ORYSJ,A0A0P0XJL5_ORYSJ Os08g0552500 OsJ_28217 OSJNBb0011H15.23 OSNPB_080552500,Os08g0552333 OsJ_28214 OSNPB_080552333,Os08g0553200 Os08g0553200 OJ1125_C01.5 OsJ_28224 OSJNBb0011H15.31 OSNPB_080553200,Os08g0553400 OJ1125_C01.7 OSJNBb0011H15.33 OSNPB_080553400,Os08g0552000 OsJ_28211 OSJNBb0011H15.17 OSNPB_080552000,Os08g0552100 OsJ_28212 OSJNBb0011H15.18 OSNPB_080552100,Os08g0552300 Os08g0552300 OsJ_28213 OSNPB_080552300,Os08g0553300 OJ1125_C01.6 OsJ_28225 OSJNBb0011H15.32 OSNPB_080553300,Os08g0553100 OJ1125_C01.4 OsJ_28223 OSJNBb0011H15.30 OSNPB_080553100,Os08g0553000 OSNPB_080553000,Os08g0552400 OSNPB_080552400 ENOG411DVM1 BHLH145 Q9FGB0 BH145_ARATH Transcription factor bHLH145 (Basic helix-loop-helix protein 145) (AtbHLH145) (bHLH 145) (Transcription factor EN 131) (bHLH transcription factor bHLH145) 34714 Transcription factor bHLH145 (Basic helix-loop-helix protein 145) (AtbHLH145) (bHLH 145) (Transcription factor EN 131) (bHLH transcription factor bHLH145) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2170111; AT5G50010 Transcription factor NA NA NA NA NA NA NA ENOG411DVM0 MRG1 Q94C32 MRG1_ARATH Protein MRG1 (MRG family protein 1) (Morf Related Gene 1) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with MRG2. Mrg1 and mrg2 double mutants are late-flowering under long-day growth conditions. {ECO:0000269|PubMed:25183522, ECO:0000269|PubMed:25211338}. FUNCTION: Chromatin remodeling factor. Acts as a 'reader' protein by binding to H3K36me3 and H3K36me3 to control histone H4 acetylation. Increases the transcriptional levels of the flowering time genes FLC and FT (PubMed:25183522, PubMed:25211338). Binds the chromatin at the FT promoter upon interaction with CO (Probable). {ECO:0000269|PubMed:25183522, ECO:0000269|PubMed:25211338, ECO:0000305|PubMed:25211338}. 36383 Protein MRG1 (MRG family protein 1) (Morf Related Gene 1) histone acetyltransferase complex [GO:0000123]; chromatin remodeling [GO:0006338]; histone acetylation [GO:0016573]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. Mainly expressed in the vasculature of cotyledons and leaves, and in roots and inflorescences (PubMed:25211338). {ECO:0000269|PubMed:25183522, ECO:0000269|PubMed:25211338}. locus:2114980; AT4G37280 Mortality factor 4-like protein 1 MRG family protein, putative, expressed (Os11g0545600 protein),Os04g0101300 protein,Os11g0545600 protein (Fragment),Os04g0101100 protein Q0IS93,Q2R2X7,A0A0N7KIF9,A0A0P0Y3B7,A0A0P0W600 Q0IS93_ORYSJ,Q2R2X7_ORYSJ,A0A0N7KIF9_ORYSJ,A0A0P0Y3B7_ORYSJ,A0A0P0W600_ORYSJ Os11g0545600 LOC_Os11g34300 Os11g0545600 OSNPB_110545600,Os11g0545600 LOC_Os11g34300 OSNPB_110545600,Os04g0101300 OSNPB_040101300,Os11g0545600 OSNPB_110545600,Os04g0101100 OSNPB_040101100 ENOG411DVM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Allene oxide synthase NA NA NA NA NA NA NA ENOG411DVM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:YDG_SRA OSJNBb0038F03.7 protein (Os04g0544100 protein) Q7XN04 Q7XN04_ORYSJ Os04g0544100 OSJNBb0038F03.7 OSNPB_040544100 ENOG411DVM5 NPGR1 Q9CB03,A0A1P8AQ39,A0A1P8AQ16 NPGR1_ARATH,A0A1P8AQ39_ARATH,A0A1P8AQ16_ARATH Protein NPGR1 (NO POLLEN GERMINATION RELATED 1),No pollen germination related 1 76871,60821,76430 Protein NPGR1 (NO POLLEN GERMINATION RELATED 1),No pollen germination related 1 plasma membrane [GO:0005886]; calmodulin binding [GO:0005516] TISSUE SPECIFICITY: Expressed in pollen, flowers, fruits and leaves. {ECO:0000269|PubMed:12928497}. locus:2016029; AT1G27460 tetratricopeptide repeat protein Os03g0200600 protein B9F5R6 B9F5R6_ORYSJ Os03g0200600 OsJ_09805 OSNPB_030200600 ENOG411DVM4 TGD2 Q9LTR2 TGD2_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic (ABC transporter I family member 15) (ABC transporter ABCI.15) (AtABCI15) Compared to the wild type mutant plants were consistently smaller and slightly pale as was observed for the tgd1-1 mutants. Chlorophyll contents (Chlorophyll per gram of fresh weight) were reduced to a similar extent in the tgd1-1 and tgd2-1 mutants. Mutant plants had aberrant accumulation of oligogalactolipids and triacylglycerols; this was consistent with a disruption of the import of ER-derived lipids into the plastid. Dwarf; Slightly pale green-C. Benning-2006 FUNCTION: Component of a phosphatidic acid/lipid transport complex in the chloroplast envelope. Specifically binds phosphatidic acid (PA). Involved in lipid transfer from the endoplasmic reticulum (ER) to plastids, and necessary for thylakoids formation. {ECO:0000269|PubMed:16818883}. 41630 Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic (ABC transporter I family member 15) (ABC transporter ABCI.15) (AtABCI15) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; lipid transporter activity [GO:0005319]; phospholipid binding [GO:0005543]; intracellular lipid transport [GO:0032365]; lipid transport [GO:0006869] locus:2092354; AT3G20320 protein TRIGALACTOSYLDIACYLGLYCEROL 2 chloroplastic-like ABC-type transport system-like (Os01g0974000 protein) (cDNA clone:001-032-B11, full insert sequence) (cDNA clone:J013001A23, full insert sequence) (cDNA clone:J023131K04, full insert sequence) Q5JL23 Q5JL23_ORYSJ Os01g0974000 Os01g0974000 OsJ_04947 OSNPB_010974000 P0459B04.5 P0698H10.29 ENOG411DVM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein TRANSPARENT TESTA Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q75LU9,A0A0N7KDT4 Q75LU9_ORYSJ,A0A0N7KDT4_ORYSJ Os03g0626700 LOC_Os03g42830 Os03g0626700 Os03g42830 OSJNBb0013K08.2 OSNPB_030626700,Os01g0766000 OSNPB_010766000 ENOG411ED2N Q9FHN2 Q9FHN2_ARATH Invertase (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Ripening-related protein-like) 22464 Invertase (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Ripening-related protein-like) enzyme inhibitor activity [GO:0004857] locus:2153147; AT5G51520 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411ED2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSRY Q0WPK0 Q0WPK0_ARATH Kinase like protein (Protein kinase superfamily protein) R-ATH-68962; 99640 Kinase like protein (Protein kinase superfamily protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; DNA replication initiation [GO:0006270]; double-strand break repair via break-induced replication [GO:0000727]; peptidyl-serine phosphorylation [GO:0018105]; phagocytosis [GO:0006909]; protein autophosphorylation [GO:0046777]; regulation of cell shape [GO:0008360] locus:2130290; AT4G16970 STYKc Os10g0563500 protein (Fragment),Os10g0563550 protein (Fragment) Q0IVM6,A0A0N7KS81,A0A0P0XXA1 Q0IVM6_ORYSJ,A0A0N7KS81_ORYSJ,A0A0P0XXA1_ORYSJ Os10g0563500 OSNPB_100563500,Os10g0563550 OSNPB_100563550 ENOG411DSRZ Q9LRT1 Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 111932 Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2091353; AT3G28040 probably inactive leucine-rich repeat receptor-like protein kinase Os01g0957100 protein (Fragment) Q0JFW9 Q0JFW9_ORYSJ Os01g0957100 Os01g0957100 OSNPB_010957100 ENOG411DSR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ammonium transporter Ammonium transporter 1 member 1 (OsAMT1;1),Ammonium transporter 1 member 2 (OsAMT1;2),Ammonium transporter (Fragment) Q7XQ12,Q6K9G1,A0A0P0WCF8 AMT11_ORYSJ,AMT12_ORYSJ,A0A0P0WCF8_ORYSJ AMT1-1 AMT1 Os04g0509600 LOC_Os04g43070 OsJ_15423 OSJNBb0065L13.7,AMT1-2 AMT1-3 Os02g0620600 LOC_Os02g40730 OJ1234_B11.3 OJ1372_D06.28 OsJ_07562,Os04g0509600 OSNPB_040509600 FUNCTION: Ammonium transporter probably involved in ammonium uptake from the soil. {ECO:0000269|PubMed:12610225, ECO:0000269|PubMed:12881500}.,FUNCTION: Ammonium transporter probably involved in ammonium uptake from the soil and ammonium uptake and retrieval in the vascular system. {ECO:0000269|PubMed:12881500}. ENOG411DRHP MTPC4 Q8H1G3 MTPC4_ARATH Metal tolerance protein C4 (AtMTPc4) (AtMTP7) FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. 50104 Metal tolerance protein C4 (AtMTPc4) (AtMTP7) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; cation transmembrane transporter activity [GO:0008324] locus:2017562; AT1G51610 metal tolerance protein Os04g0298200 protein A0A0P0W8Q3 A0A0P0W8Q3_ORYSJ Os04g0298200 OSNPB_040298200 ENOG411DYW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 Probable inactive beta-glucosidase 33 (Os9bglu33),Beta-glucosidase 32 (Os9bglu32) (EC 3.2.1.21) Q0J0G1,Q0J0G2 BGL33_ORYSJ,BGL32_ORYSJ BGLU33 Os09g0511900 LOC_Os09g33710,BGLU32 Os09g0511700 LOC_Os09g33690 ENOG411DYW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411DYW0 TGD1 Q8L4R0 TGD1_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic (ABC transporter I family member 14) (ABC transporter ABCI.14) (AtABCI14) DISRUPTION PHENOTYPE: Disruption in the biosynthesis of ER-derived thylakoid lipids, and accumulation of oligogalactolipids, triacylglycerols (TAGs), and phosphatidates (PAs). Reduced growth with stout leaves and siliques. Impaired embryogenesis. {ECO:0000269|PubMed:12743031, ECO:0000269|PubMed:16199613}. Compared to the wild type mutant plants were consistently smaller and slightly pale as was observed for the tgd1-1 mutants. Chlorophyll contents (Chlorophyll per gram of fresh weight) were reduced to a similar extent in the tgd1-1 and tgd2-1 mutants. Mutant plants had aberrant accumulation of oligogalactolipids and triacylglycerols; this was consistent with a disruption of the import of ER-derived lipids into the plastid.,reduced growth 50% of the seeds are aborted at the embryo heart stage the seed chloroplasts have reduced galactolipids and that the galactolipids have reduced 18-carbon fatty acids leaves accumulate trigalactosyldiacylglycerol triacylglycerol and phosphatidate Embryo defective; Cotyledon-C. Benning-2007 FUNCTION: Required during embryogenesis. Permease involved in lipid transfer from the endoplasmic reticulum (ER) to plastids, and necessary for thylakoids formation. {ECO:0000269|PubMed:12743031, ECO:0000269|PubMed:16199613, ECO:0000269|PubMed:18689504, ECO:0000269|PubMed:20410050}. 37907 Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic (ABC transporter I family member 14) (ABC transporter ABCI.14) (AtABCI14) ATP-binding cassette (ABC) transporter complex [GO:0043190]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast outer membrane [GO:0009707]; lipid transporter activity [GO:0005319]; lipid transport [GO:0006869] TISSUE SPECIFICITY: High levels in green tissues, but low levels in nongreen tissues such as roots. {ECO:0000269|PubMed:12743031}. locus:2013099; AT1G19800 protein TRIGALACTOSYLDIACYLGLYCEROL 1 chloroplastic-like Os04g0553000 protein (Fragment) A0A0P0WDG9,A0A0P0WD88 A0A0P0WDG9_ORYSJ,A0A0P0WD88_ORYSJ Os04g0553000 OSNPB_040553000 ENOG411DYWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat family protein Leucine Rich Repeat family protein (Os11g0628000 protein),Leucine Rich Repeat family protein, expressed (Os11g0625900 protein) (cDNA clone:J013002E14, full insert sequence),Os10g0118100 protein (Fragment) Q2R0X3,Q2R0Y6,A0A0P0XQZ8 Q2R0X3_ORYSJ,Q2R0Y6_ORYSJ,A0A0P0XQZ8_ORYSJ LOC_Os11g41100 Os11g0628000 OSNPB_110628000,Os11g0625900 LOC_Os11g40970 Os11g0625900 OSNPB_110625900,Os10g0118100 OSNPB_100118100 ENOG411DYWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frigida-like protein FRIGIDA-like protein Q5W6K5 Q5W6K5_ORYSJ LOC_Os03g39160 Os03g0588600 OSJNBb0085A04.10 OSNPB_030588600 ENOG411E1V2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0160300 protein (cDNA clone:J013040D10, full insert sequence) Q8H554 Q8H554_ORYSJ OJ1714_H10.123 Os07g0160300 OsJ_23165 OSNPB_070160300 ENOG411E1V3 Q9SUQ4,A0A1P8B8W1,A0A1P8B8W5 Q9SUQ4_ARATH,A0A1P8B8W1_ARATH,A0A1P8B8W5_ARATH Apospory-associated protein C (At4g23730) (Galactose mutarotase-like superfamily protein) (Uncharacterized protein At4g23730) (Uncharacterized protein F9D16.200),Galactose mutarotase-like superfamily protein ARA:GQT-2001-MONOMER; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Glycolysis / Gluconeogenesis (00010),Metabolic pathways (01100) 34628,35304,30926 Apospory-associated protein C (At4g23730) (Galactose mutarotase-like superfamily protein) (Uncharacterized protein At4g23730) (Uncharacterized protein F9D16.200),Galactose mutarotase-like superfamily protein carbohydrate binding [GO:0030246]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975] locus:2128519; AT4G23730 Aldose 1-epimerase NA NA NA NA NA NA NA ENOG411E6K0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411E6K1 Q67XI5 Q67XI5_ARATH At4g20030 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At4g20030) 17392 At4g20030 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At4g20030) nucleus [GO:0005634]; RNA binding [GO:0003723] locus:2119797; AT4G20030 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E6K2 ZFP3 Q39262,Q9LEU3 ZFP3_ARATH,Q9LEU3_ARATH Zinc finger protein 3,C2H2 and C2HC zinc fingers superfamily protein (Uncharacterized protein At5g10970) (Zinc finger-like protein) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seeds are hypersensitivite to inhibition of germination by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. FUNCTION: Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}. MISCELLANEOUS: Seeds over-expressing ZFP3 are insensitive to inhibition of germination by abscisic acid (ABA). Plants over-expressing ZFP3 are dwarf, have reduced number and size of siliques, which contains few seeds or are empty. {ECO:0000269|PubMed:24808098}. 26351,30189 Zinc finger protein 3,C2H2 and C2HC zinc fingers superfamily protein (Uncharacterized protein At5g10970) (Zinc finger-like protein) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; regulation of transcription, DNA-templated [GO:0006355],nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in the chalaze of seeds, hypocotyls, cotyledons, roots, emerging lateral roots, leaves, sepals and stamens. These data suggest that ZFP3 is expressed in most organs, showing high expression in vascular tissues. locus:2146960;,locus:2183780; AT5G25160,AT5G10970 zinc finger protein NA NA NA NA NA NA NA ENOG411E6K3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6K4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0576600 protein (cDNA clone:002-132-F10, full insert sequence) Q6L5F9 Q6L5F9_ORYSJ Os05g0576600 Os05g0576600 OJ1126_B10.3 OsJ_19649 OSNPB_050576600 ENOG411E6K6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) Non-specific lipid-transfer protein Q5Z710 Q5Z710_ORYSJ B1018E06.15 Os06g0539500 OSNPB_060539500 FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. {ECO:0000256|RuleBase:RU000628}. ENOG411E6K7 Q9M9M6 NDUS6_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. 12234 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; mitochondrial electron transport, NADH to ubiquinone [GO:0006120] locus:2097810; AT3G03070 NADH dehydrogenase ubiquinone iron-sulfur protein 6 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial Q84SD6 Q84SD6_ORYSJ P0577B11.122 Os08g0161700 OsJ_26133 OSNPB_080161700 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000256|PIRNR:PIRNR016564}. ENOG411E6K8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1 (By similarity) Cytochrome b-c1 complex subunit 6 Q6ESZ6 Q6ESZ6_ORYSJ Os02g0541700 OJ1298_H07.29 OSNPB_020541700 P0472F10.7 FUNCTION: This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1. {ECO:0000256|PIRNR:PIRNR000019}. ENOG411E6K9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E6KA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6KB HIPP33 F4JZL7 HIP33_ARATH Heavy metal-associated isoprenylated plant protein 33 (AtHIP33) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 59621 Heavy metal-associated isoprenylated plant protein 33 (AtHIP33) cytoplasm [GO:0005737]; plasmodesma [GO:0009506]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2179604; AT5G19090 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E6KC Q9SSC1,Q9XI29 Y1801_ARATH,Y1540_ARATH MAPK kinase substrate protein At1g80180,Uncharacterized protein At1g15400 FUNCTION: May play a role in the regulation of stomata patterning. {ECO:0000305|PubMed:22631074}. 15106,16339 MAPK kinase substrate protein At1g80180,Uncharacterized protein At1g15400 plasma membrane [GO:0005886]; stomatal complex patterning [GO:0010375],plasma membrane [GO:0005886] TISSUE SPECIFICITY: Expressed in developing cotyledons, mature cotyledons, cotyledon epidermis and stomata. {ECO:0000269|PubMed:22631074}. locus:2016264;,locus:2037738; AT1G80180,AT1G15400 NA Os05g0176300 protein (Fragment) C7J2W8 C7J2W8_ORYSJ Os05g0176300 Os05g0176300 OSNPB_050176300 ENOG411E6KD MOS11 Q9LZ08 MOS11_ARATH Protein MODIFIER OF SNC1 11 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21203492}. FUNCTION: Contributes to the transfer of mature mRNA from the nucleus to the cytosol. May function before mRNAs enter nuclear pore and in the same mRNA export pathway as MOS3. {ECO:0000269|PubMed:21203492}. 22779 Protein MODIFIER OF SNC1 11 nucleoplasm [GO:0005654]; nucleus [GO:0005634]; RNA binding [GO:0003723]; poly(A)+ mRNA export from nucleus [GO:0016973] locus:2151271; AT5G02770 NA Expressed protein (Os03g0283300 protein) Q8H8U3 Q8H8U3_ORYSJ LOC_Os03g17490 Os03g0283300 OSNPB_030283300 ENOG411E6KE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E6KF Q9FZ98 Q9FZ98_ARATH F3H9.10 protein (Transmembrane protein) (Uncharacterized protein At1g28250) (Uncharacterized protein At1g28250/F3H9_23) 11159 F3H9.10 protein (Transmembrane protein) (Uncharacterized protein At1g28250) (Uncharacterized protein At1g28250/F3H9_23) integral component of membrane [GO:0016021] locus:2032231; AT1G28250 NA Os07g0299600 protein (Fragment) A0A0P0X544 A0A0P0X544_ORYSJ Os07g0299600 OSNPB_070299600 ENOG411E6KG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0644000 protein (cDNA clone:001-122-B07, full insert sequence) (cDNA clone:J033147D17, full insert sequence) Q5VP66 Q5VP66_ORYSJ Os01g0644000 Os01g0644000 OsJ_02797 OSNPB_010644000 P0510C12.40 P0707D10.5 ENOG411E6KH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0249800 protein (Fragment) A0A0P0V126 A0A0P0V126_ORYSJ Os01g0249800 OSNPB_010249800 ENOG411E6KI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-box zinc finger family protein Os02g0176000 protein Q6EUQ3 Q6EUQ3_ORYSJ Os02g0176000 Os02g0176000 OJ1077_E05.17 OSNPB_020176000 ENOG411E6KJ O23305,Q9M8A0,A0A1I9LLE3 Y4449_ARATH,Q9M8A0_ARATH,A0A1I9LLE3_ARATH FHA domain-containing protein At4g14490,F16B3.3 protein (SMAD/FHA domain-containing protein),SMAD/FHA domain-containing protein 43367,66388,58817 FHA domain-containing protein At4g14490,F16B3.3 protein (SMAD/FHA domain-containing protein),SMAD/FHA domain-containing protein nucleus [GO:0005634]; mRNA binding [GO:0003729] locus:2129785;,locus:2074557; AT4G14490,AT3G02400 FHA domain-containing protein FHA domain containing protein, expressed (Os03g0728500 protein) (Putative FHA domain protein) Q6ATJ5 Q6ATJ5_ORYSJ Os03g0728500 LOC_Os03g51870 Os03g0728500 OsJ_12434 OSNPB_030728500 ENOG411E6KK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0128100 protein Q688R4,A0A0P0WHJ2 Q688R4_ORYSJ,A0A0P0WHJ2_ORYSJ Os05g0128100 OSJNBa0056I11.6 OSNPB_050128100,Os05g0128100 OSNPB_050128100 ENOG411E6KM B3H6R4 B3H6R4_ARATH Ovate family protein 20361 Ovate family protein locus:4515102951; AT2G36026 BEST Arabidopsis thaliana protein match is OFP6 (OVATE FAMILY PROTEIN 6) (TAIR AT3G52525.1) NA NA NA NA NA NA NA ENOG411E6KN Q940V5 Q940V5_ARATH At3g16179/At3g16179 (Thioesterase superfamily protein) 16704 At3g16179/At3g16179 (Thioesterase superfamily protein) cytoplasm [GO:0005737]; acyl-CoA hydrolase activity [GO:0047617] locus:505006353; AT3G16175 Thioesterase superfamily NA NA NA NA NA NA NA ENOG411E6KP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family NA NA NA NA NA NA NA ENOG411E6KQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411E6KR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411E6KS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: nitrilase-associated protein Os03g0417800 protein (Fragment) A0A0P0VYT7 A0A0P0VYT7_ORYSJ Os03g0417800 OSNPB_030417800 ENOG411E6KV Q9SL91 Q9SL91_ARATH At2g25720 (Expressed protein) (Uncharacterized protein At2g25720) 13026 At2g25720 (Expressed protein) (Uncharacterized protein At2g25720) nucleolus [GO:0005730] locus:2050301; AT2G25720 NA Os04g0566000 protein A0A0P0WDJ4 A0A0P0WDJ4_ORYSJ Os04g0566000 OSNPB_040566000 ENOG411E6KW Q9LJR9,A0A1I9LSG2 Q9LJR9_ARATH,A0A1I9LSG2_ARATH At3g25030 (RING/U-box superfamily protein),RING/U-box superfamily protein 27833,23555 At3g25030 (RING/U-box superfamily protein),RING/U-box superfamily protein locus:2086949; AT3G25030 RING NA NA NA NA NA NA NA ENOG411E1VE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Phospholipase D (EC 3.1.4.4) Q69P64 Q69P64_ORYSJ Os09g0421300 Os09g0421300 OJ1740_D06.16 OSNPB_090421300 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ENOG411E1VT Q94A64,F4KI34 FB251_ARATH,F4KI34_ARATH F-box protein At5g03970,F-box associated ubiquitination effector family protein 47949,46687 F-box protein At5g03970,F-box associated ubiquitination effector family protein locus:2150665; AT5G03970 NA F-box domain containing protein, expressed (Os10g0155300 protein),Os05g0269100 protein (cDNA clone:J013063M11, full insert sequence) Q7G6D7,Q5W6C2 Q7G6D7_ORYSJ,Q5W6C2_ORYSJ Os10g0155300 LOC_Os10g06700 Os10g0155300 OsJ_30762 OSJNAa0034B05.12 OSJNBa0004E08.8 OSNPB_100155300,Os05g0269100 OsJ_17849 OSJNBa0037H03.7 OSNPB_050269100 ENOG411DVMN T19K24.17 O48588,Q9FYH8,F4KBN2 O48588_ARATH,Q9FYH8_ARATH,F4KBN2_ARATH Molybdenum cofactor sulfurase family protein (Similarity to unknown) (T19K24.17 protein) (Uncharacterized protein At5g44720),F17F8.22 (Molybdenum cofactor sulfurase family protein) (Uncharacterized protein At1g30910) (Uncharacterized protein At1g30910/F17F8_22),Molybdenum cofactor sulfurase family protein ARA:AT5G44720-MONOMER;,ARA:AT1G30910-MONOMER; 34799,35192,26139 Molybdenum cofactor sulfurase family protein (Similarity to unknown) (T19K24.17 protein) (Uncharacterized protein At5g44720),F17F8.22 (Molybdenum cofactor sulfurase family protein) (Uncharacterized protein At1g30910) (Uncharacterized protein At1g30910/F17F8_22),Molybdenum cofactor sulfurase family protein catalytic activity [GO:0003824]; molybdenum ion binding [GO:0030151]; pyridoxal phosphate binding [GO:0030170] locus:2156369;,locus:2015746; AT5G44720,AT1G30910 cofactor sulfurase Molybdenum cofactor sulfurase protein-like (Os09g0560700 protein),Molybdenum cofactor sulfurase protein-like (Molybdenum cofactor sulfurase-like protein 2) (Os09g0560800 protein) (cDNA clone:J033079H04, full insert sequence) Q653D7,Q653D6 Q653D7_ORYSJ,Q653D6_ORYSJ Os09g0560700 OJ1065_E04.30 OsJ_30334 OSNPB_090560700 P0635G10.7,MCSU2 Os09g0560800 OJ1065_E04.31 OsJ_30335 OSNPB_090560800 P0635G10.8 ENOG411DVMA F17A17.16,F17A17.17,MIF21.3,F17A17.18 Q9SFD2,Q9SFD1,Q9LUB8,Q9SFD0 Q9SFD2_ARATH,Q9SFD1_ARATH,Q9LUB8_ARATH,Q9SFD0_ARATH Pectin lyase-like superfamily protein (Polygalacturonase (PGA3)) (Polygalacturonase PGA3) (Putative polygalacturonase (PGA3)) (Putative polygalacturonase(PGA3)),Pectin lyase-like superfamily protein (Putative polygalacturonase),At5g48140 (Pectin lyase-like superfamily protein) (Polygalacturonase) (Putative polygalacturonase) ARA:AT3G07820-MONOMER;,ARA:AT3G07830-MONOMER;,ARA:AT5G48140-MONOMER;,ARA:AT3G07840-MONOMER; 41681,42913,42520,42592 Pectin lyase-like superfamily protein (Polygalacturonase (PGA3)) (Polygalacturonase PGA3) (Putative polygalacturonase (PGA3)) (Putative polygalacturonase(PGA3)),Pectin lyase-like superfamily protein (Putative polygalacturonase),At5g48140 (Pectin lyase-like superfamily protein) (Polygalacturonase) (Putative polygalacturonase) extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2077402;,locus:2077412;,locus:2164773;,locus:2077437; AT3G07820,AT3G07830,AT5G48140,AT3G07840 Polygalacturonase NA NA NA NA NA NA NA ENOG411E8G5 Q3EB68,B3H4H0,A8MRJ6 Q3EB68_ARATH,B3H4H0_ARATH,A8MRJ6_ARATH Uncharacterized protein 10036,11154,10307 Uncharacterized protein locus:2091596;,locus:4010713552; AT3G13674,AT1G55205 NA Os06g0332500 protein Q0DCG4 Q0DCG4_ORYSJ Os06g0332500 Os06g0332500 OSNPB_060332500 ENOG411E8GU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L36 NA NA NA NA NA NA NA ENOG411EA7Y Q6NLP7,A0A1I9LNY1 GDL60_ARATH,A0A1I9LNY1_ARATH GDSL esterase/lipase At3g62280 (EC 3.1.1.-) (Extracellular lipase At3g62280),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT3G62280-MONOMER; 3.1.1.- 40804,33207 GDSL esterase/lipase At3g62280 (EC 3.1.1.-) (Extracellular lipase At3g62280),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2098048; AT3G62280 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EA7W PLC1 Q39032 PLCD1_ARATH Phosphoinositide phospholipase C 1 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC1) (AtPLC1) (AtPLC1S) (PI-PLC1) FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. Required for secondary responses to abscisic acid signals. {ECO:0000269|PubMed:11340187, ECO:0000269|PubMed:7732004, ECO:0000269|Ref.7}. MetaCyc:MONOMER-1622; R-ATH-112043;R-ATH-114604;R-ATH-1855204;R-ATH-202433;R-ATH-399997;R-ATH-416476;R-ATH-434316;R-ATH-5607764; 3.1.4.11; Phosphatidylinositol signaling system (04070),Calcium signaling pathway (04020),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.4.11 64314 Phosphoinositide phospholipase C 1 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC1) (AtPLC1) (AtPLC1S) (PI-PLC1) intracellular [GO:0005622]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; phospholipase C activity [GO:0004629]; signal transducer activity [GO:0004871]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in stems, leaves, roots, flowers and siliques. Predominant in the vascular tissues of roots and leaves. {ECO:0000269|PubMed:7732004, ECO:0000269|Ref.7}. locus:2178803; AT5G58670 phospholipase C NA NA NA NA NA NA NA ENOG411EA7T MGN6.20 Q9FHZ5,Q9CAM9,Q9CAQ3,Q9LQ17,Q9CAQ4,F4I1Z6,A0A1P8AS59,A0A1P8AVT1,A0A1P8AS31 Q9FHZ5_ARATH,Q9CAM9_ARATH,Q9CAQ3_ARATH,Q9LQ17_ARATH,Q9CAQ4_ARATH,F4I1Z6_ARATH,A0A1P8AS59_ARATH,A0A1P8AVT1_ARATH,A0A1P8AS31_ARATH Caffeic acid 3-O-methyltransferase-like protein (O-methyltransferase) (O-methyltransferase family protein),Caffeic O-methyltransferase, putative; 68744-70102 (O-methyltransferase family protein),O-methyltransferase family protein (Putative caffeic acid 3-O-methyltransferase; 46558-47944),F16P17.4 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),O-methyltransferase family protein (Putative caffeic acid 3-O-methyltransferase; 41078-42528),O-methyltransferase family protein ARA:AT5G53810-MONOMER;,ARA:AT1G63140-MONOMER;,ARA:AT1G77530-MONOMER;,ARA:AT1G62900-MONOMER;,ARA:AT1G77520-MONOMER; R-ATH-209931; 41945,42535,42326,22927,42395,34148,32100,29932,44920 Caffeic acid 3-O-methyltransferase-like protein (O-methyltransferase) (O-methyltransferase family protein),Caffeic O-methyltransferase, putative; 68744-70102 (O-methyltransferase family protein),O-methyltransferase family protein (Putative caffeic acid 3-O-methyltransferase; 46558-47944),F16P17.4 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),O-methyltransferase family protein (Putative caffeic acid 3-O-methyltransferase; 41078-42528),O-methyltransferase family protein O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438],O-methyltransferase activity [GO:0008171]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438],O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983] locus:2164087;,locus:2015223;,locus:2204695;,locus:2015519;,locus:2204680; AT5G53810,AT1G63140,AT1G77530,AT1G62900,AT1G77520 Dimerisation domain NA NA NA NA NA NA NA ENOG411EA7R Q84VP8 Q84VP8_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At5g21130) 30935 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At5g21130) integral component of membrane [GO:0016021] locus:2178993; AT5G21130 BEST Arabidopsis thaliana protein match is harpin-induced protein-related HIN1-related harpin-responsive protein-related (TAIR AT2G27080.2) NA NA NA NA NA NA NA ENOG411EA7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase Os06g0488600 protein (Fragment) Q0DC38 Q0DC38_ORYSJ Os06g0488600 Os06g0488600 OSNPB_060488600 ENOG411EA7G Q0WRY1,A0A1P8B985 Q0WRY1_ARATH,A0A1P8B985_ARATH CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) FUNCTION: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. {ECO:0000256|RuleBase:RU810713}. PATHWAY: Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2. {ECO:0000256|RuleBase:RU810713}. ARA:AT4G20320-MONOMER; R-ATH-499943; 6.3.4.2 65933,60994 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) ATP binding [GO:0005524]; CTP synthase activity [GO:0003883]; 'de novo' CTP biosynthetic process [GO:0044210]; glutamine metabolic process [GO:0006541] locus:2120357; AT4G20320 CTP synthase NA NA NA NA NA NA NA ENOG411EA7F MYB3R2 Q9SPN3,F4JHD4,F4IB54 MB3R2_ARATH,F4JHD4_ARATH,F4IB54_ARATH Transcription factor MYB3R-2 (Myb-related protein 3R-2) (Plant c-MYB-like protein 2) (Protein PC-MYB2),Myb domain protein 3r2,Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Aberrant circadian rhythms. {ECO:0000269|PubMed:18426557}. FUNCTION: Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}. 50032,46265,14027 Transcription factor MYB3R-2 (Myb-related protein 3R-2) (Plant c-MYB-like protein 2) (Protein PC-MYB2),Myb domain protein 3r2,Homeodomain-like superfamily protein nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of circadian rhythm [GO:0042752]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355] locus:2127108;,locus:2194691; AT4G00540,AT1G43330 Transcription factor NA NA NA NA NA NA NA ENOG411EA7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aquaporin NA NA NA NA NA NA NA ENOG411EA7D GRF1,GRF2,GRF4,GF14 PHI P42643,Q01525,P46077,Q9SHV6,F4JJ94,F4HWQ5 14331_ARATH,14332_ARATH,14334_ARATH,Q9SHV6_ARATH,F4JJ94_ARATH,F4HWQ5_ARATH 14-3-3-like protein GF14 chi (General regulatory factor 1),14-3-3-like protein GF14 omega (General regulatory factor 2),14-3-3-like protein GF14 phi (General regulatory factor 4),14-3-3 family protein (14-3-3 protein (Grf15), putative),General regulatory factor 1,GF14 protein phi chain DISRUPTION PHENOTYPE: Disturbed levels of several metabolites (e.g. beta-alanine, aspartate, pyroglutamate, glutamate, glutamine, alpha-ketoglutarate, palmitate and shikimate). {ECO:0000269|PubMed:22104211}. FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. Involved in the regulation of nutrient metabolism (PubMed:22104211). {ECO:0000269|PubMed:22104211}.,FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. R-ATH-1445148;R-ATH-3371453;R-ATH-3371511;,R-ATH-1445148;R-ATH-430116;R-ATH-450385;R-ATH-450604;R-ATH-5673000;R-ATH-5674135;R-ATH-5675221;R-ATH-6804114; 29932,29162,30194,9356,35839,33357 14-3-3-like protein GF14 chi (General regulatory factor 1),14-3-3-like protein GF14 omega (General regulatory factor 2),14-3-3-like protein GF14 phi (General regulatory factor 4),14-3-3 family protein (14-3-3 protein (Grf15), putative),General regulatory factor 1,GF14 protein phi chain cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein domain specific binding [GO:0019904]; regulation of metabolic process [GO:0019222],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; protein domain specific binding [GO:0019904]; brassinosteroid mediated signaling pathway [GO:0009742],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein domain specific binding [GO:0019904],vacuolar membrane [GO:0005774]; protein domain specific binding [GO:0019904],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; protein domain specific binding [GO:0019904]; protein phosphorylated amino acid binding [GO:0045309]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; protein domain specific binding [GO:0019904]; brassinosteroid mediated signaling pathway [GO:0009742] locus:2032060;,locus:2039861;,locus:2122323;,locus:2203283; AT4G09000,AT1G78300,AT1G35160,AT2G10450 14_3_3 NA NA NA NA NA NA NA ENOG411EA79 HSD6 Q9LUE4 HSD6_ARATH 11-beta-hydroxysteroid dehydrogenase-like 6 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 6) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 6) (AtHSD6) R-ATH-194002; 1.1.1.- 37993 11-beta-hydroxysteroid dehydrogenase-like 6 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 6) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 6) (AtHSD6) integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; steroid biosynthetic process [GO:0006694] locus:2163315; AT5G50770 short chain dehydrogenase NA NA NA NA NA NA NA ENOG411EA78 ERF037 O80654 ERF37_ARATH Ethylene-responsive transcription factor ERF037 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 26729 Ethylene-responsive transcription factor ERF037 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2195985; AT1G77200 AP2 NA NA NA NA NA NA NA ENOG411EA77 T17J13.140 Q9M1Q6,A0A1I9LNH8 Q9M1Q6_ARATH,A0A1I9LNH8_ARATH At3g62180 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein T17J13.140),Plant invertase/pectin methylesterase inhibitor superfamily protein 23729,27651 At3g62180 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein T17J13.140),Plant invertase/pectin methylesterase inhibitor superfamily protein cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910],enzyme inhibitor activity [GO:0004857] locus:2098028; AT3G62180 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EA76 Q9T0C6 FB230_ARATH Putative F-box protein At4g11580 38880 Putative F-box protein At4g11580 locus:2139697; AT4G11580 Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EA75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EA74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os05g0250000 protein,Os05g0467700 protein (cDNA clone:J033132J23, full insert sequence) B9FJN4,Q6I5S3 B9FJN4_ORYSJ,Q6I5S3_ORYSJ Os05g0250000 OsJ_17805 OSNPB_050250000,Os05g0467700 Os05g0467700 OJ1058_C01.2 OJ1387_F08.18 OsJ_18858 OSNPB_050467700 ENOG411EA73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways (By similarity) Sucrose synthase 7 (OsSUS7) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 7),Sucrose synthase 5 (OsSUS5) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 5),Sucrose synthase 6 (OsSUS6) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 6),Os02g0831500 protein,Sucrose synthase (EC 2.4.1.13) Q7XNX6,H6TFZ4,Q6K973,A0A0P0VRU2,A0A0P0W7V7 SUS7_ORYSJ,SUS5_ORYSJ,SUS6_ORYSJ,A0A0P0VRU2_ORYSJ,A0A0P0W7V7_ORYSJ SUS7 Os04g0249500 LOC_Os04g17650 OSJNBb0026I12.4,SUS5 Os04g0309600 LOC_Os04g24430 OSJNBa0033H08.16,SUS6 Os02g0831500 LOC_Os02g58480 OJ1149_C12.12-1,Os02g0831500 OSNPB_020831500,Os04g0249500 OSNPB_040249500 FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000250}.,FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000256|RuleBase:RU280817}. ENOG411EA72 SRK2J O64812 SRK2J_ARATH Serine/threonine-protein kinase SRK2J (EC 2.7.11.1) (OST1-kinase-like 10) (SNF1-related kinase 2.9) (SnRK2.9) 2.7.11.1 38974 Serine/threonine-protein kinase SRK2J (EC 2.7.11.1) (OST1-kinase-like 10) (SNF1-related kinase 2.9) (SnRK2.9) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:15292193}. locus:2045319; AT2G23030 S_TKc NA NA NA NA NA NA NA ENOG411EA71 REM12,REM11 P0CAP4,Q8S8E8,P0CAP3,A0A1P8AXF6,A0A1P8AXK5,A0A1P8AXH6,A0A1P8AXF8,F4IPS6,A0A1P8B0R0,A0A1P8AXE2,A0A1P8AXH7,A0A1P8AXF7 REM12_ARATH,REML1_ARATH,REM11_ARATH,A0A1P8AXF6_ARATH,A0A1P8AXK5_ARATH,A0A1P8AXH6_ARATH,A0A1P8AXF8_ARATH,F4IPS6_ARATH,A0A1P8B0R0_ARATH,A0A1P8AXE2_ARATH,A0A1P8AXH7_ARATH,A0A1P8AXF7_ARATH B3 domain-containing protein REM12 (Protein REPRODUCTIVE MERISTEM 12),B3 domain-containing protein REM-like 1 (Protein REPRODUCTIVE MERISTEM-like 1),B3 domain-containing protein REM11 (Protein REPRODUCTIVE MERISTEM 11),Transcriptional factor B3 family protein,AP2/B3-like transcriptional factor family protein 50208,87156,32039,47266,29686,69896,66301,69463,93184,26348,41993,41492 B3 domain-containing protein REM12 (Protein REPRODUCTIVE MERISTEM 12),B3 domain-containing protein REM-like 1 (Protein REPRODUCTIVE MERISTEM-like 1),B3 domain-containing protein REM11 (Protein REPRODUCTIVE MERISTEM 11),Transcriptional factor B3 family protein,AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2046618;,locus:6530298183;,locus:2046633; AT2G24680,AT2G24690,AT2G24681 Transcriptional factor B3 family protein NA NA NA NA NA NA NA ENOG411DQVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain Os05g0449600 protein (Putative beta-D-glucan exohydrolase) (cDNA clone:002-102-A08, full insert sequence) Q60EH3 Q60EH3_ORYSJ Os05g0449600 B1122D01.6 OSNPB_050449600 ENOG411DQVK STP12 O65413 STP12_ARATH Sugar transport protein 12 (Hexose transporter 12) FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}. 56166 Sugar transport protein 12 (Hexose transporter 12) integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] AT4G21480 transporter Sugar transport protein MST7 (Monosaccharide transporter 7) (OsMST7) (Sugar:proton symporter MST7),Sugar transport protein MST8 (Monosaccharide transporter 8) (OsMST8) (Sugar:proton symporter MST8) Q94EC3,Q94EC4 MST7_ORYSJ,MST8_ORYSJ MST7 Os01g0567600 LOC_Os01g38680 OsJ_02268 P0002B05.21,MST8 Os01g0567500 LOC_Os01g38670 P0002B05.20 FUNCTION: Mediates active uptake of hexoses by sugar:proton symport. {ECO:0000250|UniProtKB:Q6Z401}.,FUNCTION: Mediates active uptake of hexoses by sugar:proton symport (By similarity). May play an important role in transporting monosaccharides during anther development (Probable). {ECO:0000250|UniProtKB:Q6Z401, ECO:0000305|PubMed:16730464}. ENOG411DXTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein NB-ARC domain containing protein, expressed (Os12g0511400 protein),NB-ARC domain containing protein, expressed (Os12g0204600 protein),NB-ARC domain containing protein (Os12g0205300 protein),Os06g0304700 protein (Fragment),Os12g0206100 protein,Os12g0205000 protein,Os12g0511400 protein (Fragment),Os12g0511600 protein,Os03g0222350 protein,Os03g0144700 protein (Fragment),Os12g0204800 protein (Fragment),Os12g0209901 protein (Fragment),Os12g0209800 protein (Fragment),Os12g0205933 protein Q2QQ05,Q2QW74,Q2QW68,Q0DCP2,B9GCC0,A0A0P0Y821,A0A0P0YAK0,A0A0P0YAN0,A0A0P0VUT4,A0A0P0VT87,A0A0P0Y8A7,A0A0P0Y816,A0A0P0Y7Z7,A0A0P0Y828 Q2QQ05_ORYSJ,Q2QW74_ORYSJ,Q2QW68_ORYSJ,Q0DCP2_ORYSJ,B9GCC0_ORYSJ,A0A0P0Y821_ORYSJ,A0A0P0YAK0_ORYSJ,A0A0P0YAN0_ORYSJ,A0A0P0VUT4_ORYSJ,A0A0P0VT87_ORYSJ,A0A0P0Y8A7_ORYSJ,A0A0P0Y816_ORYSJ,A0A0P0Y7Z7_ORYSJ,A0A0P0Y828_ORYSJ LOC_Os12g32660 Os12g0511400 OSNPB_120511400,Os12g0204600 LOC_Os12g10330 Os12g0204600 OsJ_10967 OSNPB_120204600,Os12g0205300 LOC_Os12g10390 OsJ_35548 OSNPB_120205300,Os06g0304700 Os06g0304700 OSNPB_060304700,Os12g0206100 OsJ_35551 OSNPB_120206100,Os12g0205000 OSNPB_120205000,Os12g0511400 OSNPB_120511400,Os12g0511600 OSNPB_120511600,Os03g0222350 OSNPB_030222350,Os03g0144700 OSNPB_030144700,Os12g0204800 OSNPB_120204800,Os12g0209901 OSNPB_120209901,Os12g0209800 OSNPB_120209800,Os12g0205933 OSNPB_120205933 ENOG411DXTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os01g0302250 protein (Fragment),Os03g0705800 protein C7IX35,A0A0N7KHW8 C7IX35_ORYSJ,A0A0N7KHW8_ORYSJ Os01g0302250 Os01g0302250 OSNPB_010302250,Os03g0705800 OSNPB_030705800 ENOG411DXTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os05g0424300 protein (Putative cytochrome P450) Q60EN9 Q60EN9_ORYSJ Os05g0424300 OJ1212_B02.10 OSNPB_050424300 ENOG411DXTK Q3E8K6,Q8RWD6,Q9FLY7,Q9FLY8,Q9FLZ1 FB273_ARATH,FB271_ARATH,FB338_ARATH,FB274_ARATH,FB272_ARATH Putative F-box protein At5g39470,F-box protein At5g39450,Probable F-box protein At5g39490,Putative F-box protein At5g39480,Putative F-box protein At5g39460 18994,65174,64384,64282,64361 Putative F-box protein At5g39470,F-box protein At5g39450,Probable F-box protein At5g39490,Putative F-box protein At5g39480,Putative F-box protein At5g39460 locus:2175698;,locus:2175678;,locus:2175718;,locus:2175708;,locus:2175688; AT5G39470,AT5G39450,AT5G39490,AT5G39480,AT5G39460 F-box protein F-box protein family-like (Os08g0105100 protein) (cDNA clone:J023019E02, full insert sequence) Q6ZJM8 Q6ZJM8_ORYSJ Os08g0105100 Os08g0105100 OJ1300_E01.9 OSNPB_080105100 ENOG411DXTD RCCR Q8LDU4 RCCR_ARATH Red chlorophyll catabolite reductase, chloroplastic (AtRCCR) (RCC reductase) (EC 1.3.7.12) (Accelerated cell death protein 2) Accumulation of red chlorophyll catabolites (RCC) and RCC-like compounds during senescence.,Detached leaves maintained in permanent darkness accumulate a faint red-orange coloration after 5 to 7 days which differs from wild type where a progressive yellowing of the leaves is observed. This red coloration is not observed under normal senescence.,Development-related lesion-mimic phenotype occuring at a presenescent stage.,develops spontaneous lesions resembling those produced during a pathogen-induced rapid cell death response (the hypersensitive response HR); typical HR characteristics occur both within the necrotic tissue and within the healthy part of the plant including: modification of plant cell walls resistance to bacterial pathogens and accumulation of defense-related gene transcripts the signal molecule salicylic acid and an antimicrobial compound.,No cell death symptoms or alterations in senescence behavior compared to wild type. Necrotic lesions-J. Greenberg-2001 FUNCTION: Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with pheophorbide a oxygenase (PaO) by reducing the C20/C1 double bond of the intermediate, RCC. Belongs to the chlorophyll catabolic enzymes (CCEs). {ECO:0000269|PubMed:10743659}. MISCELLANEOUS: The absence of light completely suppresses cell death in acd2 mutants. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll degradation. ARA:AT4G37000-MONOMER;MetaCyc:AT4G37000-MONOMER; 1.3.1.80; 1.3.7.12 36449 Red chlorophyll catabolite reductase, chloroplastic (AtRCCR) (RCC reductase) (EC 1.3.7.12) (Accelerated cell death protein 2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; red chlorophyll catabolite reductase activity [GO:0051743]; chlorophyll catabolic process [GO:0015996]; defense response, incompatible interaction [GO:0009814]; regulation of plant-type hypersensitive response [GO:0010363]; regulation of programmed cell death [GO:0043067] DEVELOPMENTAL STAGE: Present at all times of development. No change of levels during senescence or pathogen attack. {ECO:0000269|PubMed:23200839}. TISSUE SPECIFICITY: Expressed in all tissues tested, including roots. locus:2115105; AT4G37000 red chlorophyll catabolite reductase Os10g0389200 protein (Red chlorophyll catabolite reductase 1) (Red chlorophyll catabolite reductase, putative, expressed),Os10g0389100 protein Q338P6,A0A0P0XTW6 Q338P6_ORYSJ,A0A0P0XTW6_ORYSJ RCCR1 Os10g0389200 LOC_Os10g25030 OSNPB_100389200,Os10g0389100 OSNPB_100389100 ENOG411DXTF PPA4 Q9LFF9 IPYR4_ARATH Soluble inorganic pyrophosphatase 4 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 4) (PPase 4) FUNCTION: Catalyzes the irreversible hydrolysis of pyrophosphate (PPi) to phosphate. The MgPPi(2-) complex binds to the enzyme only after a free Mg(2+) ion has bound. No activity with glycerol-3-phosphate, glucose-6-phosphate, p-nitrophenylphosphate, ADP, NADP(+), NAD(+),NADH, NADPH or phosphoribosyl pyrophosphate as substrates. {ECO:0000269|Ref.6}. 3.6.1.1 24576 Soluble inorganic pyrophosphatase 4 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 4) (PPase 4) cytosol [GO:0005829]; inorganic diphosphatase activity [GO:0004427]; magnesium ion binding [GO:0000287]; phosphate-containing compound metabolic process [GO:0006796]; response to cadmium ion [GO:0046686] DEVELOPMENTAL STAGE: Expressed throughout plant development, with a lower expression in young plantes and a maximum during flowering. {ECO:0000303|Ref.6}. TISSUE SPECIFICITY: Ubiquitous, excepted in pollen. Very low expression in cork, xylem and hypocotyls. {ECO:0000303|Ref.6}. locus:2084066; AT3G53620 soluble inorganic Os05g0114000 protein (Putative inorganic pyrophosphatase) (cDNA clone:J023014E07, full insert sequence),Os01g0974800 protein (cDNA, clone: J065194D01, full insert sequence) Q75L10,B7F8Y9 Q75L10_ORYSJ,B7F8Y9_ORYSJ Os05g0114000 Os05g0114000 OsJ_16878 OSJNBb0041A22.11 OSNPB_050114000,Os01g0974800 OsJ_04954 OSNPB_010974800 ENOG411DXTG DTX40 Q9LVD9 DTX40_ARATH Protein DETOXIFICATION 40 (AtDTX40) (Multidrug and toxic compound extrusion protein 40) (MATE protein 40) R-ATH-425366; 54952 Protein DETOXIFICATION 40 (AtDTX40) (Multidrug and toxic compound extrusion protein 40) (MATE protein 40) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:2089955; AT3G21690 protein TRANSPARENT TESTA 12-like Os03g0571700 protein,Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q0DQQ3,Q10HY8,Q10HY1,Q75L61 Q0DQQ3_ORYSJ,Q10HY8_ORYSJ,Q10HY1_ORYSJ,Q75L61_ORYSJ Os03g0571700 OSNPB_030571700,LOC_Os03g37411 Os03g0570800 OSNPB_030570800,Os03g0571900 LOC_Os03g37490 OsJ_11501 OSNPB_030571900,OSJNBa0095N06.18 LOC_Os03g37640 Os03g0572900 OsJ_11504 OSNPB_030572900 ENOG411DXTA BBR Q9LT17,A0A1I9LQ74 BBR_ARATH,A0A1I9LQ74_ARATH E3 ubiquitin ligase BIG BROTHER-related (AtBBR) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BIG BROTHER-related),RING/U-box superfamily protein FUNCTION: E3 ubiquitin-ligase probably involved in organ size regulation. {ECO:0000250|UniProtKB:Q8L649}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 37263,26340 E3 ubiquitin ligase BIG BROTHER-related (AtBBR) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BIG BROTHER-related),RING/U-box superfamily protein metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567] locus:2092271; AT3G19910 E3 ubiquitin ligase BIG Os09g0535100 protein (cDNA clone:J023039O04, full insert sequence),Os08g0548300 protein (Putative RING-H2 finger protein RHG1a) (cDNA clone:J033029A20, full insert sequence) Q69JZ9,Q6YT05 Q69JZ9_ORYSJ,Q6YT05_ORYSJ Os09g0535100 OSNPB_090535100 P0569E11.3,Os08g0548300 Os08g0548300 OJ1112_E06.17 OsJ_28186 OSNPB_080548300 P0544G09.33 ENOG411DXTC CCMC,ABCI5,ABCI4 P92527,F4IL76,F4IMA2 CCMC_ARATH,F4IL76_ARATH,F4IMA2_ARATH Putative cytochrome c biosynthesis ccmC-like mitochondrial protein (ABC transporter I family member 3) (ABC transporter ABCI.3) (AtABCI3),Putative cytochrome c biosynthesis ccmC-like mitochondrial protein,Cytochrome C assembly protein FUNCTION: May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes.,FUNCTION: May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. {ECO:0000256|RuleBase:RU364092}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated genes (At2g07681 and At2g07771) is demonstrated. 26087,28457,82901 Putative cytochrome c biosynthesis ccmC-like mitochondrial protein (ABC transporter I family member 3) (ABC transporter ABCI.3) (AtABCI3),Putative cytochrome c biosynthesis ccmC-like mitochondrial protein,Cytochrome C assembly protein integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; heme transporter activity [GO:0015232]; cytochrome complex assembly [GO:0017004]; heme transport [GO:0015886]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; heme binding [GO:0020037]; heme transporter activity [GO:0015232]; cytochrome complex assembly [GO:0017004],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; heme transporter activity [GO:0015232]; cytochrome complex assembly [GO:0017004]; heme transport [GO:0015886]; oxidation-reduction process [GO:0055114] locus:504954573;locus:504955920;,locus:3437252; ATMG00900,AT2G07771ATMG00900;,AT2G07681 cytochrome c Putative cytochrome c biosynthesis ccmC-like mitochondrial protein Q8HCQ6 Q8HCQ6_ORYSJ ccmC CCMC FUNCTION: May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. {ECO:0000256|RuleBase:RU364092}. ENOG411DXTT dl3460c O23339,Q9LJ94 O23339_ARATH,Q9LJ94_ARATH At4g14840 (Spindle assembly abnormal protein) (Uncharacterized protein AT4g14840) (Uncharacterized protein dl3460c),Spindle assembly abnormal protein (Uncharacterized protein At3g22520) 62513,67571 At4g14840 (Spindle assembly abnormal protein) (Uncharacterized protein AT4g14840) (Uncharacterized protein dl3460c),Spindle assembly abnormal protein (Uncharacterized protein At3g22520) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570] locus:2130379;,locus:2077011; AT4G14840,AT3G22520 NA NA NA NA NA NA NA NA ENOG411DXTU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os02g0543500 protein Q6ESX7 Q6ESX7_ORYSJ Os02g0543500 OsJ_08488 OSNPB_020543500 P0472F10.28 ENOG411DXTV A0A1P8ATK2,F4I543 A0A1P8ATK2_ARATH,F4I543_ARATH Uncharacterized protein 27923,30110 Uncharacterized protein endoplasmic reticulum [GO:0005783] locus:4515102688; AT1G56423 NA Expressed protein (Os03g0307000 protein) (cDNA, clone: J100040M24, full insert sequence) Q10MJ2 Q10MJ2_ORYSJ LOC_Os03g19400 Os03g0307000 OsJ_10562 OSNPB_030307000 ENOG411DXT4 PTL,EDA31 Q9LZS0,Q700D8,F4J2I3 PTL_ARATH,Q700D8_ARATH,F4J2I3_ARATH Trihelix transcription factor PTL (Trihelix DNA-binding protein PETAL LOSS),At3g10000 (Homeodomain-like superfamily protein),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Disrupted perianth development, particularly petal initiation and orientation, sometimes leading to petal fusion. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176}. FUNCTION: Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. 66639,55503,54298 Trihelix transcription factor PTL (Trihelix DNA-binding protein PETAL LOSS),At3g10000 (Homeodomain-like superfamily protein),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; establishment of petal orientation [GO:0048498]; negative regulation of organ growth [GO:0046621]; perianth development [GO:0090428]; petal development [GO:0048441]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; sepal development [GO:0048442]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; polar nucleus fusion [GO:0010197]; regulation of transcription, DNA-templated [GO:0006355],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques. {ECO:0000269|PubMed:15269176}. locus:2144553;,locus:2100148; AT5G03680,AT3G10000 Transcription factor NA NA NA NA NA NA NA ENOG411E60B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411DW2I OEP37 O80565 OEP37_ARATH Outer envelope pore protein 37, chloroplastic (Chloroplastic outer envelope pore protein of 37 kDa) (AtOEP37) FUNCTION: Voltage-dependent peptide-sensitive high conductance rectifying cation channel with a strong affinity for TIC32 that is imported into the chloroplast. Conductance is pH-dependent decreasing with decreasing pH values. {ECO:0000269|PubMed:16624824}. 38835 Outer envelope pore protein 37, chloroplastic (Chloroplastic outer envelope pore protein of 37 kDa) (AtOEP37) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of chloroplast outer membrane [GO:0031359]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; pore complex [GO:0046930]; identical protein binding [GO:0042802]; ion channel activity [GO:0005216]; porin activity [GO:0015288]; cation transport [GO:0006812] DEVELOPMENTAL STAGE: During seed development, confined to green cotyledons of mature embryos. In germinating seedlings, detected in cotyledons and the root hair zone of the primary root. In older seedlings, restricted to cotyledons. {ECO:0000269|PubMed:16624824}. TISSUE SPECIFICITY: Ubiquitously expressed at low levels. Mostly present in cotyledons, and accumulates in seedlings and embryos. {ECO:0000269|PubMed:16624824}. locus:2051844; AT2G43950 Outer envelope protein Os02g0608900 protein (cDNA clone:J013164G19, full insert sequence) Q6K1X5 Q6K1X5_ORYSJ Os02g0608900 OSJNBa0030C08.39 OSNPB_020608900 P0496E03.12 ENOG411DW2H PNG1 Q9FGY9 PNG1_ARATH Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (EC 3.5.1.52) (Peptide:N-glycanase) (AtPNG1) No difference in PNGase activity could be detected (in fact the activity was absent from both wild-type and mutant plants) nor was that of TGase. FUNCTION: Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl-glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high-mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulum that are exported to the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is a prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins (By similarity). {ECO:0000250}. ARA:AT5G49570-MONOMER; R-ATH-532668; 3.5.1.52 82446 Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (EC 3.5.1.52) (Peptide:N-glycanase) (AtPNG1) cytosol [GO:0005829]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity [GO:0000224]; glycoprotein catabolic process [GO:0006516]; misfolded or incompletely synthesized protein catabolic process [GO:0006515]; protein deglycosylation [GO:0006517]; response to microbial phytotoxin [GO:0010188]; response to ozone [GO:0010193]; response to salicylic acid [GO:0009751] locus:2157869; AT5G49570 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (EC 3.5.1.52) (Peptide:N-glycanase),Os07g0497400 protein (Fragment) Q7F0R1,A0A0P0X5Z4 PNG1_ORYSJ,A0A0P0X5Z4_ORYSJ PNG1 Os07g0497400 LOC_Os07g31460 OJ1197_D06.103 P0005E02.110,Os07g0497400 OSNPB_070497400 FUNCTION: Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl-glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high-mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulum that are exported to the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is a prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins (By similarity). {ECO:0000250}. ENOG411DW2K GLX1 O65398 GLX1_ARATH Lactoylglutathione lyase GLX1 (EC 4.4.1.5) (Glyoxalase I) (AtGLX1) (GlyI) FUNCTION: Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. {ECO:0000250|UniProtKB:Q04760}. PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 1/2. {ECO:0000250|UniProtKB:Q04760}. ARA:AT1G11840-MONOMER; 4.4.1.5 31928 Lactoylglutathione lyase GLX1 (EC 4.4.1.5) (Glyoxalase I) (AtGLX1) (GlyI) chloroplast envelope [GO:0009941]; cytosol [GO:0005829]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; dioxygenase activity [GO:0051213]; lactoylglutathione lyase activity [GO:0004462]; metal ion binding [GO:0046872]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243]; response to cadmium ion [GO:0046686] locus:2008930; AT1G11840 Lactoylglutathione lyase Lactoylglutathione lyase (EC 4.4.1.5) (Aldoketomutase) (Allergen Glb33) (Glyoxalase I) (Glx I) (Glyoxylase I 11) (OsGLYI-11) (OsGLYI11) (Ketone-aldehyde mutase) (Methylglyoxalase) (PP33) (S-D-lactoylglutathione methylglyoxal lyase) (allergen Ory s Glyoxalase I),Os08g0191700 protein (cDNA clone:J023075A08, full insert sequence),Os08g0191700 protein Q948T6,B7F6T2,A0A0P0XCY4 LGUL_ORYSJ,B7F6T2_ORYSJ,A0A0P0XCY4_ORYSJ GLYI-11 GLX-I Os08g0191700 LOC_Os08g09250 OSJNBa0056O06.9-1,Os08g0191700 OSNPB_080191700 FUNCTION: Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione (By similarity). Involved in the detoxifiation of methylglyoxal. Can functionally complement growth defect of a yeast mutant lacking GLY I. Involved in abiotic stress response. Over-expression of GLYI-11 in tobacco increases tolerance to osmotic, oxidative and salt stresses (PubMed:24661284). {ECO:0000250|UniProtKB:Q04760, ECO:0000269|PubMed:24661284}. MISCELLANEOUS: Plants over-expressing GLYI-11 display increased tolerance to osmotic, oxidative and salt stresses. {ECO:0000269|PubMed:24661284}. ENOG411DW2J ATCSA-1 Q680F0,Q93ZG3,A0A1P8ANN6,F4HQX6,F4HUT3 Q680F0_ARATH,Q93ZG3_ARATH,A0A1P8ANN6_ARATH,F4HQX6_ARATH,F4HUT3_ARATH Transducin/WD40 repeat-like superfamily protein (mRNA, clone: RAFL22-29-M18) (mRNA, clone: RAFL22-57-P16) (mRNA, clone: RAFL22-96-B11),At1g27840/F28L5_15 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g27840),Transducin/WD40 repeat-like superfamily protein Sensitive to UV-B light-T. Guo-2010,Sensitive to genotoxic stress-T. Guo-2010 FUNCTION: Involved in UV-B tolerance and genome integrity. In association with DDB2, is necessary for repair of UV-B-induced DNA lesions. {ECO:0000269|PubMed:20128879}. R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-8951664; 43233,49654,36760,49996,49753 Transducin/WD40 repeat-like superfamily protein (mRNA, clone: RAFL22-29-M18) (mRNA, clone: RAFL22-57-P16) (mRNA, clone: RAFL22-96-B11),At1g27840/F28L5_15 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g27840),Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; DNA repair [GO:0006281]; response to UV-B [GO:0010224] locus:2035449;,locus:2029815; AT1G27840,AT1G19750 DNA excision repair protein Os02g0307200 protein,Os01g0857900 protein A0A0P0VI72,A0A0N7KE35 A0A0P0VI72_ORYSJ,A0A0N7KE35_ORYSJ Os02g0307200 OSNPB_020307200,Os01g0857900 OSNPB_010857900 ENOG411DW2M PER35,PER50,PER73,PER51 Q96510,Q43731,Q43873,Q9SZE7,F4JS33,A8MRF4 PER35_ARATH,PER50_ARATH,PER73_ARATH,PER51_ARATH,F4JS33_ARATH,A8MRF4_ARATH Peroxidase 35 (Atperox P35) (EC 1.11.1.7) (ATP21a),Peroxidase 50 (Atperox P50) (EC 1.11.1.7) (ATP9a) (PRXR2),Peroxidase 73 (Atperox P73) (EC 1.11.1.7) (ATP10a) (PRXR11),Peroxidase 51 (Atperox P51) (EC 1.11.1.7) (ATP37),Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.,FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: Exhibits a Ca(2+)-pectate binding affinity which could be interpreted in vivo as a specificity to interact with the pectic structure of the cell wall.,FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT3G49960-MONOMER;,ARA:AT4G37520-MONOMER;,ARA:AT5G67400-MONOMER;,ARA:AT4G37530-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35756,36076,35927,35989,35750,30937 Peroxidase 35 (Atperox P35) (EC 1.11.1.7) (ATP21a),Peroxidase 50 (Atperox P50) (EC 1.11.1.7) (ATP9a) (PRXR2),Peroxidase 73 (Atperox P73) (EC 1.11.1.7) (ATP10a) (PRXR11),Peroxidase 51 (Atperox P51) (EC 1.11.1.7) (ATP37),Peroxidase (EC 1.11.1.7) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979],cytoplasm [GO:0005737]; extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]; rhythmic process [GO:0048511],extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Up-regulated during leaf development. {ECO:0000269|Ref.10}. TISSUE SPECIFICITY: Slightly expressed in roots.,TISSUE SPECIFICITY: Expressed in roots and leaves.,TISSUE SPECIFICITY: Expressed in the whole plant, with the highest expression in roots. locus:2083088;,locus:2120051;,locus:2158227;,locus:2120061; AT3G49960,AT4G37520,AT5G67400,AT4G37530 peroxidase Peroxidase (EC 1.11.1.7) Q8H2P0,Q8W5H7 Q8H2P0_ORYSJ,Q8W5H7_ORYSJ OJ1138_B05.114 prx98 Os07g0115300 OSNPB_070115300,prx51 LOC_Os03g55420 Os03g0762400 OsJ_12685 OSJNBa0002J24.4 OSNPB_030762400 ENOG411DW2N RAP Q8VZE7 RAP_ARATH RAP domain-containing protein, chloroplastic (AtRAP) DISRUPTION PHENOTYPE: Retarded growth and photobleaching phenotype (PubMed:18003861, PubMed:24585838). Enhanced resistance to the bacterial pathogen Pseudomonas syringae pv. tomato (PubMed:18003861). {ECO:0000269|PubMed:18003861, ECO:0000269|PubMed:24585838}. FUNCTION: RNA-binding protein required for chloroplast 16S rRNA maturation, an important process which supports chloroplast gene expression and biogenesis. Binds to 16S rRNA precursor and is involved in its 5'-end processing (PubMed:24585838). May act as negative regulator of defense response against bacterial pathogens (PubMed:18003861). {ECO:0000269|PubMed:18003861, ECO:0000269|PubMed:24585838}. 75679 RAP domain-containing protein, chloroplastic (AtRAP) chloroplast nucleoid [GO:0042644]; plastid nucleoid [GO:0042646]; RNA binding [GO:0003723]; chloroplast rRNA processing [GO:1901259]; defense response [GO:0006952] locus:2045213; AT2G31890 RAP RAP domain-containing protein, chloroplastic (Protein ALBINO LEAF 1),Os03g0425000 protein (Fragment) Q84MH1,A0A0P0VZ03 RAP_ORYSJ,A0A0P0VZ03_ORYSJ AL1 Os03g0425000 LOC_Os03g31150 OsJ_11335,Os03g0425000 OSNPB_030425000 DISRUPTION PHENOTYPE: Leaf albino phenotype, reduced root length, and partial seedling lethality. {ECO:0000269|PubMed:27208287}. FUNCTION: Probable RNA-binging protein that plays an essential role in chloroplast development. Regulates the ribosomal proteins homeostasis and ribosomal RNA development in chloroplasts. Involved the regulation of 16S rRNA and required for the expression of chloroplast-associated photosynthetic genes. {ECO:0000269|PubMed:27208287}. ENOG411DW2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0138500 protein) Q10S15 Q10S15_ORYSJ Os03g0138500 LOC_Os03g04550 Os03g0138500 OSNPB_030138500 ENOG411DW2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0275950 protein,Os01g0275900 protein (Fragment) A0A0N7KCR4,A0A0P0V1E9 A0A0N7KCR4_ORYSJ,A0A0P0V1E9_ORYSJ Os01g0275950 OSNPB_010275950,Os01g0275900 OSNPB_010275900 ENOG411DW2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Os02g0280200 protein A0A0P0VHK3 A0A0P0VHK3_ORYSJ Os02g0280200 OSNPB_020280200 ENOG411DW2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os07g0634900 protein (Fragment) A0A0P0X925 A0A0P0X925_ORYSJ Os07g0634900 OSNPB_070634900 ENOG411DW2D WYR A0A1P8BE37,G3GBK1,Q9FM57,A0A1P8BE61,A0A1P8BE53,A0A1P8BE54,A0A1P8BE62,A0A1P8BE52,A0A1P8BE82,A0A1P8BE57 A0A1P8BE37_ARATH,G3GBK1_ARATH,Q9FM57_ARATH,A0A1P8BE61_ARATH,A0A1P8BE53_ARATH,A0A1P8BE54_ARATH,A0A1P8BE62_ARATH,A0A1P8BE52_ARATH,A0A1P8BE82_ARATH,A0A1P8BE57_ARATH Inner centromere protein, ARK-binding region protein 188979,196063,203022,192650,199350,196520,189436,193108,192267,195938 Inner centromere protein, ARK-binding region protein seed development [GO:0048316],embryo sac development [GO:0009553]; seed development [GO:0048316] locus:2162202; AT5G55820 Inner centromere protein ARK binding region Os09g0477700 protein (Fragment) A0A0N7KQZ7 A0A0N7KQZ7_ORYSJ Os09g0477700 OSNPB_090477700 ENOG411DW2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transcription factor Os02g0565000 protein (Putative 6b-interacting protein 1) Q6Z7E6 Q6Z7E6_ORYSJ Os02g0565000 Os02g0565000 OsJ_07175 OSNPB_020565000 P0020C11.22 ENOG411DW2F Q9LJY1 Q9LJY1_ARATH ARM repeat superfamily protein (At3g20170) 52142 ARM repeat superfamily protein (At3g20170) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2087565; AT3G20170 armadillo beta-catenin repeat family protein NA NA NA NA NA NA NA ENOG411DW2X ISE2 B9DFG3 ISE2_ARATH DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (EC 3.6.4.13) (ATP-dependent RNA helicase ISE2) (Protein EMBRYO DEFECTIVE 25) (Protein INCREASED SIZE EXCLUSION LIMIT 2) (Protein PIGMENT DEFECTIVE 317) DISRUPTION PHENOTYPE: Embryogenesis arrested at cotyledon stage. Altered size exclusion limit of PD; abnormally maintained dilated PD at the torpedo stage, and increased formation of secondary branched PD. Chlorosis. Altered plastid development. {ECO:0000269|PubMed:11779812, ECO:0000269|PubMed:11874921, ECO:0000269|PubMed:20434343, ECO:0000269|PubMed:22106293}. Embryo-defective phenotypes and lack of plasmodesmata aperture/size-exclusion limit downregulation after the torpedo stage.,Similar frequency of branched plasmodesmata as in ise2-1.,Homozygous embryos have proportionally thicker hypocotyls and smaller cotyledons. However the general organization of the tissues in the embryonic axis such as procambial strands ground tissue and protodermis was indistinguishable from that of wild-type embryos described in the literature.,Homozygous embryos produce very low levels of chlorophyll.,Homozygous embryos were reduced in size compared with wild-type embryos and their cotyledons were smaller with irregular borders pointed tips and uneven sizes.,Homozygous mutant embryos develop more slowly compared with wild-type embryos during the later stages of development. Abnormal morphology starts to be evident only after the heart stage.,Homozygous mutant seeds can germinate in vitro on agar plates containing Murashige and Skoog (MS) salt plus 1% sucrose although the growth/developmental rate of the homozygous seedlings was slower compared with that of wild-type seedlings. Whereas wild-type seedlings displayed fully expanded green cotyledons true leaves and a well-developed root system by 14 d after germination homozygous seedlings were much smaller and white or pale green in color. Underdeveloped cotyledons emerged from the homozygous seeds but expanded very slowly and sometimes showed bumpy irregular surfaces and occasional anthocyanin expression. Partial greening was observed in ise2 seedlings only after culture for several weeks. Most of the homozygous seedlings developed leaf-like structures that were translucent and contained trichomes. The aerial portions of the homozygous seedlings generally were stunted and thicker and frequently exhibited callus-like structures after extended periods of culture. Mutant seedlings often form stunted inflorescence shoot- and flower-like organs but normal-looking roots and root hairs. Frequently multiple short shoots originate from the apical dome of a single original seedling forming a broccoli-like structure. Homozygous seedlings grown in culture with 1% sucrose are sterile and perish immediately after germinating in soil or on MS medium without sucrose.,In all homozygous embryos from late-heart to late-torpedo stages 15% of their plasmodesmata (PD) exhibited branched morphology in contrast with the single simple PD observed in wild-type embryos. Branched PD were randomly distributed throughout the whole body of embryos and no variation in their frequency was observed among late-heart early-torpedo and late-torpedo stages.,Mutation is lethal in the homozygous state.,Radicle and the shoot apical meristem (SAM) appeared normal in the homozygous seedlings but were often larger.,Wild-type and ISE2/ise2 heterozygous embryos remain green as their organs such as hypocotyls and cotyledons develop. The corresponding ise2 embryos (from the same silique) were white by light microscopy and never turned green even at later stages. Null: Embryo defective; Cotyledon; Knockdown: Seedling lethal; Albino-P. Zambryski; D. Meinke-2003 FUNCTION: RNA helicase involved in group II intron splicing (PubMed:26147377). Essential protein required during embryogenesis. Involved in post-transcriptional gene silencing. Modulates the determination of cell fate. Necessary for normal plasmodesmata (PD) development and aperture regulation. {ECO:0000269|PubMed:11779812, ECO:0000269|PubMed:11874921, ECO:0000269|PubMed:17601829, ECO:0000269|PubMed:20434343, ECO:0000269|PubMed:26147377}. 3.6.4.13 132437 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (EC 3.6.4.13) (ATP-dependent RNA helicase ISE2) (Protein EMBRYO DEFECTIVE 25) (Protein INCREASED SIZE EXCLUSION LIMIT 2) (Protein PIGMENT DEFECTIVE 317) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasmic stress granule [GO:0010494]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; embryo development ending in seed dormancy [GO:0009793]; gene silencing by RNA [GO:0031047]; Group II intron splicing [GO:0000373]; mRNA processing [GO:0006397]; plasmodesmata-mediated intercellular transport [GO:0010497]; posttranscriptional gene silencing [GO:0016441]; RNA secondary structure unwinding [GO:0010501] locus:2020573; AT1G70070 DEAD-box ATP-dependent RNA helicase ISE2 Os02g0739000 protein (Putative helicase) (cDNA clone:J013109D01, full insert sequence),Os02g0739000 protein (Fragment) Q6Z5P0,A0A0P0VPC1 Q6Z5P0_ORYSJ,A0A0P0VPC1_ORYSJ Os02g0739000 Os02g0739000 OSNPB_020739000 P0684F11.16,Os02g0739000 OSNPB_020739000 ENOG411DW2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Hydroxy-O-Methy Os01g0695100 protein A0A0N7KDK1 A0A0N7KDK1_ORYSJ Os01g0695100 OSNPB_010695100 ENOG411DW2P HXK1,HXK2 Q42525,P93834,A8MRW9 HXK1_ARATH,HXK2_ARATH,A8MRW9_ARATH Hexokinase-1 (EC 2.7.1.1) (Protein GLUCOSE INSENSITIVE 2),Hexokinase-2 (EC 2.7.1.1),Phosphotransferase (EC 2.7.1.-) DISRUPTION PHENOTYPE: Plants display a glucose-insensitive phenotype which allows them to grow on high glucose concentration medium (>6% glucose). {ECO:0000269|PubMed:12690200}.,DISRUPTION PHENOTYPE: Plants are overall smaller with a reduced number of flowers and siliques and display a glucose-insensitive phenotype which allows them to grow on high glucose concentration medium (>6% glucose). {ECO:0000269|PubMed:9014361}. Addition of cytokinin promotes extensive shoot induction in mutant but not in WT calli.,At the flowering stage the mutant has a smaller root system tiny leaves with delayed senescence shorter petioles and inflorescences and a reduced number of flowers and siliques. Trichomes are normal and flower size and shape and produced fertile seeds (albeit in reduced number).,Defect in elongation of hypocotyl roots and cotyledons in dim light (15 μmol/m2/s).,Delayed leaf senescence.,Insensitive to high-glucose repression of chlorophyll accumulation in seedlings.,Insensitive to high-glucose repression of cotyledon expansion chlorophyll accumulation true-leaf development and root elongation. The response is specific to glucose but not to osmotic changes.,Leaves of the mutant have about one-half the glucose phosphorylation capacity of wild-type leaves when grown under low or high light conditions.,Leaves remain small and dark green with little cell expansion under high light conditions although the same number of leaves appeared at the same time as in the wild type. Short petioles and inflorescence stems; Small root system; Very small leaves; Few flowers; Delayed senescence; Insensitive to glucose-J. Sheen-2003 FUNCTION: Fructose and glucose phosphorylating enzyme. May be involved in the phosphorylation of glucose during the export from mitochondrion to cytosol. Acts as sugar sensor which may regulate sugar-dependent gene repression or activation (PubMed:26528314). Mediates the effects of sugar on plant growth and development independently of its catalytic activity or the sugar metabolism. May regulate the execution of program cell death in plant cells. Promotes roots and leaves growth (PubMed:26528314). {ECO:0000269|PubMed:12690200, ECO:0000269|PubMed:16920781, ECO:0000269|PubMed:26528314, ECO:0000269|PubMed:9014361}.,FUNCTION: Fructose and glucose phosphorylating enzyme. May be involved in the phosphorylation of glucose during the export from mitochondrion to cytosol. Acts as sugar sensor which may regulate sugar-dependent gene repression or activation. Mediates the effects of sugar on plant growth and development independently of its catalytic activity or the sugar metabolism. May regulate the execution of program cell death in plant cells. {ECO:0000269|PubMed:16920781, ECO:0000269|PubMed:9014361}. ARA:AT4G29130-MONOMER;MetaCyc:AT4G29130-MONOMER;,MetaCyc:AT2G19860-MONOMER; R-ATH-170822;R-ATH-6798695;R-ATH-70171; 2.7.1.1; 2.7.1.1,2.7.1.- 53707,54490,42926 Hexokinase-1 (EC 2.7.1.1) (Protein GLUCOSE INSENSITIVE 2),Hexokinase-2 (EC 2.7.1.1),Phosphotransferase (EC 2.7.1.-) cytosol [GO:0005829]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; glucokinase activity [GO:0004340]; glucose binding [GO:0005536]; hexokinase activity [GO:0004396]; mannokinase activity [GO:0019158]; zinc ion binding [GO:0008270]; glucose mediated signaling pathway [GO:0010255]; glycolytic process [GO:0006096]; hexose catabolic process [GO:0019320]; programmed cell death [GO:0012501]; stomatal closure [GO:0090332]; sugar mediated signaling pathway [GO:0010182]; transpiration [GO:0010148],cytosol [GO:0005829]; integral component of mitochondrial outer membrane [GO:0031307]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; glucokinase activity [GO:0004340]; glucose binding [GO:0005536]; hexokinase activity [GO:0004396]; mannokinase activity [GO:0019158]; cellular glucose homeostasis [GO:0001678]; glycolytic process [GO:0006096]; hexokinase-dependent signaling [GO:0009747]; programmed cell death [GO:0012501]; sugar mediated signaling pathway [GO:0010182],cell [GO:0005623]; ATP binding [GO:0005524]; glucose binding [GO:0005536]; hexokinase activity [GO:0004396]; cellular glucose homeostasis [GO:0001678]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Highly expressed in flowers and siliques, at intermediate levels in roots and stems, and at lower levels in rosette and cauline leaves. {ECO:0000269|PubMed:9014361}.,TISSUE SPECIFICITY: Highly expressed in siliques, at intermediate levels in roots and flowers, and at lower levels in stems, rosette and cauline leaves. {ECO:0000269|PubMed:9014361}. locus:2119931;,locus:2051920; AT4G29130,AT2G19860 hexokinase Hexokinase-5 (EC 2.7.1.1) (Hexokinase I),Hexokinase-6 (EC 2.7.1.1) (Hexokinase-2) Q5W676,Q8LQ68 HXK5_ORYSJ,HXK6_ORYSJ HXK5 Os05g0522500 LOC_Os05g44760 OJ1087_C03.12 OsJ_19253 OSJNBa0075A10.5,HXK6 HXK2 Os01g0742500 LOC_Os01g53930 P0439E07.19 FUNCTION: Fructose and glucose phosphorylating enzyme. May be involved in the phosphorylation of glucose during the export from plastids to cytosol (By similarity). {ECO:0000250, ECO:0000269|PubMed:16552590}. ENOG411DW2S MAC5C Q9LNV5,Q9ZW36,Q9FL40,F4K5C2 C3H4_ARATH,C3H25_ARATH,C3H53_ARATH,F4K5C2_ARATH Zinc finger CCCH domain-containing protein 4 (AtC3H4),Zinc finger CCCH domain-containing protein 25 (AtC3H25),Zinc finger CCCH domain-containing protein 53 (AtC3H53),CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein Twisted, slightly serrated leaves; Long petioles; Short roots; Reduced fertility; Early flowering-X. Li-2010 R-ATH-72163; 53588,54252,41755,40676 Zinc finger CCCH domain-containing protein 4 (AtC3H4),Zinc finger CCCH domain-containing protein 25 (AtC3H25),Zinc finger CCCH domain-containing protein 53 (AtC3H53),CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein nucleus [GO:0005634]; Prp19 complex [GO:0000974]; U2-type catalytic step 1 spliceosome [GO:0071006]; U2-type catalytic step 2 spliceosome [GO:0071007]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; pre-mRNA binding [GO:0036002]; U6 snRNA binding [GO:0017070]; defense response to bacterium [GO:0042742]; spliceosomal snRNP assembly [GO:0000387],Prp19 complex [GO:0000974]; U2-type catalytic step 1 spliceosome [GO:0071006]; U2-type catalytic step 2 spliceosome [GO:0071007]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; pre-mRNA binding [GO:0036002]; U6 snRNA binding [GO:0017070]; spliceosomal snRNP assembly [GO:0000387],metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676] locus:2025077;,locus:2043157;,locus:2169429; AT1G07360,AT2G29580,AT5G07060 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 49 (OsC3H49),Zinc finger CCCH domain-containing protein 40 (OsC3H40),Os06g0170500 protein (Fragment) Q6Z358,Q5SNN4,A0A0P0WTE0 C3H49_ORYSJ,C3H40_ORYSJ,A0A0P0WTE0_ORYSJ Os07g0281000 LOC_Os07g18050 OsJ_23846 P0557D09.17,Os06g0170500 LOC_Os06g07350 OsJ_019459 P0675A05.7,Os06g0170500 OSNPB_060170500 ENOG411DW2R CDKB2-1,CDKB2-2 Q8LF80,Q8LG64 CKB21_ARATH,CKB22_ARATH Cyclin-dependent kinase B2-1 (CDKB2;1) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin-dependent kinase B2-2 (CDKB2;2) (EC 2.7.11.22) (EC 2.7.11.23) MISCELLANEOUS: Protein abundance may be regulated through proteasome-mediated protein degradation. 2.7.11.22; 2.7.11.23 35593,35847 Cyclin-dependent kinase B2-1 (CDKB2;1) (EC 2.7.11.22) (EC 2.7.11.23),Cyclin-dependent kinase B2-2 (CDKB2;2) (EC 2.7.11.22) (EC 2.7.11.23) cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin binding [GO:0030332]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; G1/S transition of mitotic cell cycle [GO:0000082]; G2/M transition of mitotic cell cycle [GO:0000086]; histone phosphorylation [GO:0016572]; hormone-mediated signaling pathway [GO:0009755]; multicellular organism development [GO:0007275]; positive regulation of cell proliferation [GO:0008284]; regulation of G2/M transition of mitotic cell cycle [GO:0010389]; regulation of gene expression [GO:0010468]; regulation of meristem structural organization [GO:0009934],cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin binding [GO:0030332]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein serine/threonine kinase activity [GO:0004674]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; G1/S transition of mitotic cell cycle [GO:0000082]; hormone-mediated signaling pathway [GO:0009755]; multicellular organism development [GO:0007275]; positive regulation of cell proliferation [GO:0008284]; protein autophosphorylation [GO:0046777]; regulation of G2/M transition of mitotic cell cycle [GO:0010389]; regulation of gene expression [GO:0010468]; regulation of meristem structural organization [GO:0009934]; regulation of mitotic cell cycle [GO:0007346] DEVELOPMENTAL STAGE: Expressed from early G2 phase and increases to reach a peak at mitosis. {ECO:0000269|PubMed:12857813}. TISSUE SPECIFICITY: Expressed in root tips, shoot apical meristem, leaf primordia vascular tissues and tapetum of anthers. {ECO:0000269|PubMed:11432958, ECO:0000269|PubMed:12857813, ECO:0000269|PubMed:17099223}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:11432958}. locus:2011761;,locus:2037410; AT1G76540,AT1G20930 Cyclin-dependent kinase Cyclin-dependent kinase B2-1 (CDKB2;1) (CDKB;2) (EC 2.7.11.22) (EC 2.7.11.23) (CDC2Os-3),Os05g0483801 protein Q0J4I1,A0A0N7KKZ6 CKB21_ORYSJ,A0A0N7KKZ6_ORYSJ CDKB2-1 SS224 Os08g0512600 LOC_Os08g40170 OsJ_27911 P0711H09.13,Os05g0483801 OSNPB_050483801 FUNCTION: Forms a complex with CYCB2-1 or CYCB2-2 that activates CDK kinase in tobacco BY2 cells during G2/M (mitosis) phases. May be involved in the regulation of the cell cycle at the G2/M transition. {ECO:0000269|PubMed:10987556, ECO:0000269|PubMed:12753582}. ENOG411DW2U HSP70-14,HSP70-16,HSP70-15,Hsp70-15 Q9S7C0,Q9SAB1,F4HQD4,F4HQD5,A0A1P8AT01 HSP7O_ARATH,HSP7Q_ARATH,HSP7P_ARATH,F4HQD5_ARATH,A0A1P8AT01_ARATH Heat shock 70 kDa protein 14 (Heat shock protein 70-14) (AtHsp70-14) (Heat shock protein 91),Heat shock 70 kDa protein 16 (Heat shock protein 70-16) (AtHsp70-16),Heat shock 70 kDa protein 15 (Heat shock protein 70-15) (AtHsp70-15),Heat shock protein 70 (Hsp 70) family protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21418353}.,DISRUPTION PHENOTYPE: Knockout mutation impairs stomatal closure and accelerates wilting, enhances sensitivity to heat treatment, and strengthens tolerance to potyvirus TuMV infection. {ECO:0000269|PubMed:21418353}. FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. R-ATH-3371453; 91750,85219,91681,81776,81263 Heat shock 70 kDa protein 14 (Heat shock protein 70-14) (AtHsp70-14) (Heat shock protein 91),Heat shock 70 kDa protein 16 (Heat shock protein 70-16) (AtHsp70-16),Heat shock 70 kDa protein 15 (Heat shock protein 70-15) (AtHsp70-15),Heat shock protein 70 (Hsp 70) family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408],ATP binding [GO:0005524],cell wall [GO:0005618]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524] TISSUE SPECIFICITY: Constitutively expressed. {ECO:0000269|PubMed:8706819}. locus:2016364;,locus:2027337;,locus:2017859; AT1G79930,AT1G11660,AT1G79920 heat shock Os05g0181000 protein (Putative heat shock protein Hsp70),70 kDa heat shock protein (Os01g0180800 protein) (Putative heat shock protein),Os01g0180800 protein (Fragment),Os06g0679800 protein,Os11g0696600 protein (Fragment) Q5KQJ9,Q9AQZ5,A0A0P0UZ22,A0A0N7KML3,A0A0P0Y5J2,A0A0P0UZP8 Q5KQJ9_ORYSJ,Q9AQZ5_ORYSJ,A0A0P0UZ22_ORYSJ,A0A0N7KML3_ORYSJ,A0A0P0Y5J2_ORYSJ,A0A0P0UZP8_ORYSJ Os05g0181000 Os05g0181000 OsJ_17347 OSNPB_050181000 P0453H11.8,Os01g0180800 Os01g0180800 OJ1174_D05.17 OsJ_00630 OSNPB_010180800 P0666G04.5,Os01g0180800 OSNPB_010180800,Os06g0679800 OSNPB_060679800,Os11g0696600 OSNPB_110696600 ENOG411DW2T MEE29,ESP3 F4JMJ3,F4IJV4,Q8VY00,A0A1P8B8G9,A0A1P8AXH4,F4IE90 DEAH8_ARATH,DEAH6_ARATH,ESP3_ARATH,A0A1P8B8G9_ARATH,A0A1P8AXH4_ARATH,F4IE90_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH8 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP2),Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP2) (Protein MATERNAL EFFECT EMBRYO ARREST 29),Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP2) (Protein EMBRYO DEFECTIVE 2733) (Protein ENHANCED SILENCING PHENOTYPE 3),P-loop containing nucleoside triphosphate hydrolases superfamily protein,Helicase domain-containing protein,RNA helicase family protein DISRUPTION PHENOTYPE: Embryo defective. Arrested at one-cell zygotic stage. {ECO:0000269|PubMed:15634699}.,DISRUPTION PHENOTYPE: Embryo defective (PubMed:15266054). Reduced stature, early flowering and altered leaf morphology (PubMed:17008405). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:17008405}. Reduced stature early flowering and altered leaf morphology.,Two- to three-fold fewer of the endogenous PDS mRNA than in the wild-type plants and 10- to 50-fold higher levels of PDS siRNA. Null: Embryo defective; Globular; Knockdown: Dwarf; Early flowering, Abnormal leaf morphology-D. Meinke-2003 FUNCTION: May be involved in pre-mRNA splicing. {ECO:0000305}.,FUNCTION: Involved in pre-mRNA splicing. {ECO:0000269|PubMed:17008405}. R-ATH-72163; 3.6.4.13 100987,119127,118832,90732,103698,117580 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH8 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP2),Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP2) (Protein MATERNAL EFFECT EMBRYO ARREST 29),Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP2) (Protein EMBRYO DEFECTIVE 2733) (Protein ENHANCED SILENCING PHENOTYPE 3),P-loop containing nucleoside triphosphate hydrolases superfamily protein,Helicase domain-containing protein,RNA helicase family protein cytoplasm [GO:0005737]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398],cytoplasm [GO:0005737]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; mRNA splicing, via spliceosome [GO:0000398],cytoplasm [GO:0005737]; membrane [GO:0016020]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; posttranscriptional gene silencing by RNA [GO:0035194]; RNA splicing [GO:0008380],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],ATP binding [GO:0005524]; helicase activity [GO:0004386] TISSUE SPECIFICITY: Predominantly expressed in flowers. {ECO:0000269|PubMed:17008405}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:17008405}. locus:2129036;,locus:2062492;,locus:2033723; AT4G16680,AT2G35340,AT1G32490 Pre-mRNA-splicing factor ATP-dependent RNA helicase Os01g0858200 protein (Fragment),Os05g0389800 protein (Putative DEAD/DEAH RNA helicase),Os08g0335000 protein (Fragment) Q0JHK5,Q6I5X9,A0A0P0XER6 Q0JHK5_ORYSJ,Q6I5X9_ORYSJ,A0A0P0XER6_ORYSJ Os01g0858200 Os01g0858200 OSNPB_010858200,Os05g0389800 Os05g0389800 OJ1562_H01.6 OSNPB_050389800,Os08g0335000 OSNPB_080335000 ENOG411DW2W STN8 Q9LZV4 STN8_ARATH Serine/threonine-protein kinase STN8, chloroplastic (EC 2.7.11.1) (Protein STATE TRANSITION 8) DISRUPTION PHENOTYPE: Not significantly affected in state transitions. Enhanced thylakoid folding and reduced mobility of thylakoid proteins under low-light conditions. {ECO:0000269|PubMed:15729347, ECO:0000269|PubMed:20028840, ECO:0000269|PubMed:20230505}. Phosphorylation of D1 D2 and CP43 proteins of PSII core was reduced in the stn8 mutants in comparison with the wild type. No difference in phenotype between mutant and wild type plants under normal growth conditions. Increased thylakoid stacking-A. Vener-2010 FUNCTION: Light-dependent serine/threonine protein kinase that specifically phosphorylates N-terminal threonine residues in psbA/D1, psbD/D2, psbC/CP43 and psbH, which are components of the core antenna complex of photosystem II. Phosphorylation of PSII core components facilitates the exchange of chlorophyll proteins between the grana and the stroma lamellae. Also involved in the phosphorylation of the calcium-sensing receptor (CaS). {ECO:0000269|PubMed:16040609, ECO:0000269|PubMed:16237446, ECO:0000269|PubMed:18331354, ECO:0000269|PubMed:20230505}. 2.7.11.1 54979 Serine/threonine-protein kinase STN8, chloroplastic (EC 2.7.11.1) (Protein STATE TRANSITION 8) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; photosystem II stabilization [GO:0042549] locus:2181067; AT5G01920 serine threonine-protein kinase STN8 chloroplastic-like Os05g0480000 protein,Os05g0480000 protein (Fragment) A0A0P0WNT5,A0A0P0WNR8 A0A0P0WNT5_ORYSJ,A0A0P0WNR8_ORYSJ Os05g0480000 OSNPB_050480000 ENOG411DW29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRC Os07g0557500 protein (cDNA clone:J033068I24, full insert sequence),Os07g0557500 protein (Fragment) Q0D5J1,A0A0P0X7W5 Q0D5J1_ORYSJ,A0A0P0X7W5_ORYSJ Os07g0557500 Os07g0557500 OSNPB_070557500,Os07g0557500 OSNPB_070557500 ENOG411DW21 FBL15 Q9SMY8 FBL15_ARATH F-box/LRR-repeat protein 15 Slow growth-M. Lenhard-2010 108899 F-box/LRR-repeat protein 15 auxin homeostasis [GO:0010252]; plant organ formation [GO:1905393] locus:2125939; AT4G33210 F-box LRR-repeat protein Os10g0396400 protein (Fragment),Os10g0396666 protein Q0IXV2,A0A0P0XTS9,A0A0P0XTR9 Q0IXV2_ORYSJ,A0A0P0XTS9_ORYSJ,A0A0P0XTR9_ORYSJ Os10g0396400 OSNPB_100396400,Os10g0396666 OSNPB_100396666 ENOG411DW23 PCMP-E15 O64766 PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial 71410 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2044797; AT2G35030 Pentatricopeptide repeat-containing protein Os11g0433100 protein (Os11g0433101 protein) (Pentatricopeptide, putative, expressed) Q53P99 Q53P99_ORYSJ Os11g0433101 LOC_Os11g24530 Os11g0433100 OsJ_33779 OSNPB_110433101 ENOG411DW25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinesterase Pectinesterase (EC 3.1.1.11),Os11g0659600 protein (Pectinesterase family protein, expressed) (cDNA clone:002-120-H02, full insert sequence),Os11g0659700 protein Q0IR37,Q2R044,Q2QZK1,Q2QZJ9,A0A0N7KTB2 Q0IR37_ORYSJ,Q2R044_ORYSJ,Q2QZK1_ORYSJ,Q2QZJ9_ORYSJ,A0A0N7KTB2_ORYSJ Os11g0683800 LOC_Os11g45730 Os11g0683800 OSNPB_110683800,LOC_Os11g43830 Os11g0659600 OSNPB_110659600,Os11g0683700 LOC_Os11g45720 Os11g0683700 OSNPB_110683700,Os11g0683800 LOC_Os11g45730 OSNPB_110683800,Os11g0659700 OSNPB_110659700 ENOG411DW24 Q93YR5 Q93YR5_ARATH SWIB complex BAF60b domain-containing protein (Uncharacterized protein At4g22360) 42717 SWIB complex BAF60b domain-containing protein (Uncharacterized protein At4g22360) locus:2132055; AT4G22360 SWIB Os08g0502800 protein (Parathymosin-like),Os04g0665500 protein Q6ZFI5,A0A0P0WG50 Q6ZFI5_ORYSJ,A0A0P0WG50_ORYSJ Os08g0502800 OJ1345_D02.42 OJ1506_F01.14 OSNPB_080502800,Os04g0665500 OSNPB_040665500 ENOG411DW27 Q84WL1,B9DG41,B3H5Q9 Q84WL1_ARATH,B9DG41_ARATH,B3H5Q9_ARATH At4g38090 (Ribosomal protein S5 domain protein) (Uncharacterized protein At4g38090),AT4G38090 protein (Ribosomal protein S5 domain protein),Ribosomal protein S5 domain protein 20091,25213,20352 At4g38090 (Ribosomal protein S5 domain protein) (Uncharacterized protein At4g38090),AT4G38090 protein (Ribosomal protein S5 domain protein),Ribosomal protein S5 domain protein ribosome [GO:0005840],integral component of membrane [GO:0016021]; ribosome [GO:0005840] locus:2121046; AT4G38090 IMPACT family member in pol 5'region-like Os08g0478100 protein (Thymidylate synthase-like) (cDNA clone:001-113-A04, full insert sequence) Q6ZJC5 Q6ZJC5_ORYSJ Os08g0478100 Os08g0478100 OJ1666_A04.18 OsJ_27678 OSNPB_080478100 ENOG411DW26 Q0WVU0 PP278_ARATH Pentatricopeptide repeat-containing protein At3g51320 58985 Pentatricopeptide repeat-containing protein At3g51320 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2080898; AT3G51320 Pentatricopeptide repeat-containing protein Os05g0107000 protein B9FM20 B9FM20_ORYSJ Os05g0107000 OsJ_16825 OSNPB_050107000 ENOG411DZHA UGT71C5,UGT71C4 Q9FE68,Q9LML6 U71C5_ARATH,U71C4_ARATH UDP-glycosyltransferase 71C5 (EC 2.4.1.-),UDP-glycosyltransferase 71C4 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71C4) (EC 2.4.1.91) (Flavonol 7-O-glucosyltransferase UGT71C4) FUNCTION: Possesses low quercetin 3-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}.,FUNCTION: Possesses quercetin 3-O-glucosyltransferase and 7-O-glucosyltransferase activities in vitro. Also active in vitro on benzoates and benzoate derivatives. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15352060}. 2.4.1.-,2.4.1.-; 2.4.1.91 52646,52844 UDP-glycosyltransferase 71C5 (EC 2.4.1.-),UDP-glycosyltransferase 71C4 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71C4) (EC 2.4.1.91) (Flavonol 7-O-glucosyltransferase UGT71C4) cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; abscisic acid glucosyltransferase activity [GO:0010294]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; abscisic acid homeostasis [GO:1902265]; abscisic acid metabolic process [GO:0009687]; drought recovery [GO:0009819]; positive regulation of seed germination [GO:0010030],intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152] locus:2007342;,locus:2007462; AT1G07240,AT1G07250 UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DZH3 P52577,Q9FRM1,B3LFB7,Q9T030,A0A1P8ART1 IFRH_ARATH,Q9FRM1_ARATH,B3LFB7_ARATH,Q9T030_ARATH,A0A1P8ART1_ARATH Isoflavone reductase homolog P3 (EC 1.3.1.-),At1g75300 (NADPH oxidoreductase, putative; 10572-9197) (NmrA-like negative transcriptional regulator family protein) (Putative NADPH oxidoreductase),At1g75290 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)H oxidoreductase, isoflavone reductase-like protein (NmrA-like negative transcriptional regulator family protein) (Putative NAD(P)H oxidoreductase, isoflavone reductase),NAD(P)-binding Rossmann-fold superfamily protein FUNCTION: Isoflavone reductase involved in lignan biosynthesis. Catalyzes the NADPH-dependent reduction of phenylcoumaran benzylic ethers. Converts dehydrodiconiferyl alcohol (DDC) to isodihydrodehydrodiconiferyl alcohol (IDDDC), and dihydrodehydrodiconiferyl alcohol (DDDC) to tetrahydrodehydrodiconiferyl alcohol (TDDC). Plays an important role in the biosynthesis of secondary metabolites. In addition to the 8-5'-linked neolignan DDC, can reduce the 8-8'-linked lignans, pinoresinol, and lariciresinol, but with lower activities. {ECO:0000269|PubMed:26601823}. ARA:GQT-2155-MONOMER;,ARA:AT1G75300-MONOMER;,ARA:AT1G75290-MONOMER;,ARA:AT4G39230-MONOMER; 1.3.1.- 33737,35619,35047,34072,38313 Isoflavone reductase homolog P3 (EC 1.3.1.-),At1g75300 (NADPH oxidoreductase, putative; 10572-9197) (NmrA-like negative transcriptional regulator family protein) (Putative NADPH oxidoreductase),At1g75290 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)H oxidoreductase, isoflavone reductase-like protein (NmrA-like negative transcriptional regulator family protein) (Putative NAD(P)H oxidoreductase, isoflavone reductase),NAD(P)-binding Rossmann-fold superfamily protein cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; oxidoreductase activity [GO:0016491]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979],response to cadmium ion [GO:0046686] locus:2025192;,locus:2025167;,locus:2025197;,locus:2136383; AT1G75280,AT1G75300,AT1G75290,AT4G39230 Isoflavone reductase Os01g0106400 protein (Putative isoflavone reductase) (cDNA clone:006-202-E10, full insert sequence) (cDNA clone:J033103L17, full insert sequence),Os01g0106300 protein (Putative isoflavone reductase) (cDNA clone:001-038-D01, full insert sequence) (cDNA clone:001-207-E04, full insert sequence) (cDNA clone:006-302-G05, full insert sequence) (cDNA clone:006-303-C06, full insert sequence) (cDNA clone:006-307-H12, full insert sequence) (cDNA clone:J013045H04, full insert sequence),Os06g0479400 protein (Putative 2'-hydroxyisoflavone reductase),Os06g0472200 protein (Fragment) Q9FTN5,Q9FTN6,Q69Y84,A0A0P0WX00,A0A0P0WWN3 Q9FTN5_ORYSJ,Q9FTN6_ORYSJ,Q69Y84_ORYSJ,A0A0P0WX00_ORYSJ,A0A0P0WWN3_ORYSJ Os01g0106400 Os01g0106400 OSNPB_010106400 P0005A05.19,Os01g0106300 OsJ_00052 OSNPB_010106300 P0005A05.17,P0618D11.16 Os06g0479400 OSNPB_060479400,Os06g0472200 OSNPB_060472200 ENOG411DR21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0137800 protein A0A0P0X2B3 A0A0P0X2B3_ORYSJ Os07g0137800 OSNPB_070137800 ENOG411EMGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DR2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os07g0168300 protein (Putative glutathione S-transferase GST27) (cDNA clone:006-307-B03, full insert sequence) (cDNA clone:J023052D08, full insert sequence) Q69LE6 Q69LE6_ORYSJ Os07g0168300 OSJNBa0050F10.6 OSNPB_070168300 ENOG411DR2H Q9CAD1,F4I3P5 Q9CAD1_ARATH,F4I3P5_ARATH At1g63660 (GMP synthase (Glutamine-hydrolyzing), putative / glutamine amidotransferase) (GMP synthase; 61700-64653),GMP synthase (Glutamine-hydrolyzing), putative / glutamine amidotransferase ARA:AT1G63660-MONOMER; R-ATH-73817; 59315,48012 At1g63660 (GMP synthase (Glutamine-hydrolyzing), putative / glutamine amidotransferase) (GMP synthase; 61700-64653),GMP synthase (Glutamine-hydrolyzing), putative / glutamine amidotransferase cytosol [GO:0005829]; ATP binding [GO:0005524]; GMP synthase (glutamine-hydrolyzing) activity [GO:0003922]; GMP synthase activity [GO:0003921]; pyrophosphatase activity [GO:0016462]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177],ATP binding [GO:0005524]; GMP synthase (glutamine-hydrolyzing) activity [GO:0003922]; pyrophosphatase activity [GO:0016462]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177] locus:2026709; AT1G63660 GMP synthase Os08g0326600 protein (Putative GMP synthetase) (cDNA clone:J013002G12, full insert sequence) Q8H4X9 Q8H4X9_ORYSJ OJ1136_A10.112 Os08g0326600 OSNPB_080326600 ENOG411DR2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0518000 protein (cDNA clone:J013146J12, full insert sequence) Q6H4M6 Q6H4M6_ORYSJ Os02g0518000 Os02g0518000 OSJNOa257A21.12 OSNPB_020518000 P0461D06.4 ENOG411EGJX Q1G3J4,Q1G3J2,A0A1P8B1K0,B3H4S7 Q1G3J4_ARATH,Q1G3J2_ARATH,A0A1P8B1K0_ARATH,B3H4S7_ARATH Carbohydrate-binding X8 domain superfamily protein,Major pollen allergen Ole e-like protein ARA:GQT-180-MONOMER;ARA:GQT-2572-MONOMER;,ARA:GQT-2595-MONOMER; 12493,13040,12593 Carbohydrate-binding X8 domain superfamily protein,Major pollen allergen Ole e-like protein locus:4515103363;locus:4515103365;,locus:4010713875;,locus:4515103364; AT4G09464AT4G09467;,AT4G09465,AT4G09466 X8 domain NA NA NA NA NA NA NA ENOG411EJI7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50S ribosomal protein L34 NA NA NA NA NA NA NA ENOG411EJI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EJI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJI1 SPH21 Q9LW22 SPH21_ARATH S-protein homolog 21 15504 S-protein homolog 21 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:2088444; AT3G26880 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EJIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase alpha/beta family nucleotide-binding domain NA NA NA NA NA NA NA ENOG411EJIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF543) NA NA NA NA NA NA NA ENOG411EJIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EJIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EJIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: f-box family Os07g0105200 protein A0A0N7KMT4 A0A0N7KMT4_ORYSJ Os07g0105200 OSNPB_070105200 ENOG411EJIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJIN Q94K36 Q94K36_ARATH Uncharacterized protein At3g24100 (Uncharacterized protein family SERF) 7252 Uncharacterized protein At3g24100 (Uncharacterized protein family SERF) locus:2093721; AT3G24100 4F5 protein family NA NA NA NA NA NA NA ENOG411EJIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0M7 WRKY41,WRKY53 Q8H0Y8,Q9SUP6 WRK41_ARATH,WRK53_ARATH Probable WRKY transcription factor 41 (WRKY DNA-binding protein 41),Probable WRKY transcription factor 53 (WRKY DNA-binding protein 53) DISRUPTION PHENOTYPE: Retarded leaf senescence, but no effects on pathogen resistance. {ECO:0000269|PubMed:17369373}. Minor deficiency in resistance to Psm ES4326 infection. Susceptible to bacterial infection-X. Dong-2006 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.,FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May regulate the early events of leaf senescence. Negatively regulates the expression of ESR/ESP. {ECO:0000269|PubMed:20409006}. 34894,36273 Probable WRKY transcription factor 41 (WRKY DNA-binding protein 41),Probable WRKY transcription factor 53 (WRKY DNA-binding protein 53) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium, incompatible interaction [GO:0009816]; leaf senescence [GO:0010150]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of defense response [GO:0031347]; response to chitin [GO:0010200]; response to hydrogen peroxide [GO:0042542]; response to ozone [GO:0010193]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] locus:2136093;,locus:2128514; AT4G11070,AT4G23810 transcription factor Os01g0656400 protein,Os11g0685700 protein Q0JKQ9,A0A0N7KTD0 Q0JKQ9_ORYSJ,A0A0N7KTD0_ORYSJ Os01g0656400 Os01g0656400 OSNPB_010656400,Os11g0685700 OSNPB_110685700 ENOG411E0M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os01g0876300 protein (cDNA clone:J023015I05, full insert sequence),Os01g0876300 protein (Fragment) Q8LR17,A0A0N7KE59 Q8LR17_ORYSJ,A0A0N7KE59_ORYSJ P0698A10.33-1 Os01g0876300 OSNPB_010876300,Os01g0876300 OSNPB_010876300 ENOG411E0MU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain Os07g0439100 protein Q6Z154 Q6Z154_ORYSJ Os07g0439100 Os07g0439100 OSJNBa0026I22.25 OSNPB_070439100 P0443H10.10 ENOG411E0MC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os06g0710700 protein (Putative benzoyl coenzyme A, benzyl alcohol benzoyl transferase) Q5Z9G3 Q5Z9G3_ORYSJ Os06g0710700 OSNPB_060710700 P0655A07.28 ENOG411DRR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peptide nitrate transporter Os06g0239500 protein (Putative oligopeptide transporter) (cDNA clone:J013001A13, full insert sequence),Os06g0239300 protein Q67VA7,A0A0N7KLU4 Q67VA7_ORYSJ,A0A0N7KLU4_ORYSJ Os06g0239500 Os06g0239500 OSJNBa0052G07.25 OSJNBa0068B06.34 OSNPB_060239500,Os06g0239300 OSNPB_060239300 ENOG411DRR1 RECG F4INA9 RECG_ARATH ATP-dependent DNA helicase homolog RECG, chloroplastic (EC 3.6.4.12) FUNCTION: Critical role in recombination and DNA repair. {ECO:0000250|UniProtKB:P24230}. 3.6.4.12 108376 ATP-dependent DNA helicase homolog RECG, chloroplastic (EC 3.6.4.12) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; ATP-dependent RNA helicase activity [GO:0004004]; DNA binding [GO:0003677]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; mitochondrial DNA inheritance [GO:0033955]; RNA secondary structure unwinding [GO:0010501] locus:2049541; AT2G01440 ATP-dependent DNA helicase Os02g0710800 protein (Fragment) A0A0P0VNY0 A0A0P0VNY0_ORYSJ Os02g0710800 OSNPB_020710800 ENOG411DRR2 GC1 Q8S8N9 GOGC1_ARATH Golgin candidate 1 (AtGC1) (Golgin-84) FUNCTION: Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. 79180 Golgin candidate 1 (AtGC1) (Golgin-84) Golgi apparatus [GO:0005794]; Golgi cisterna [GO:0031985]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; Golgi organization [GO:0007030]; retrograde transport, vesicle recycling within Golgi [GO:0000301] locus:2051930; AT2G19950 NA Golgin-84 Q5JLY8 GOGA5_ORYSJ Os01g0744400 LOC_Os01g54119 OsJ_03424 OSJNBa0014K08.9 FUNCTION: May be involved in maintaining Golgi structure and in intra-Golgi transport. {ECO:0000250}. ENOG411DRR3 CRY1,CRY2 Q43125,Q96524 CRY1_ARATH,CRY2_ARATH Cryptochrome-1 (AtCry) (Atcry1) (Blue light photoreceptor) (Protein BLUE LIGHT UNINHIBITED 1) (Protein ELONGATED HYPOCOTYL 4) (Protein OUT OF PHASE 2) (OOP2),Cryptochrome-2 (Atcry2) (Blue light photoreceptor) (Protein PHR homolog 1) (AtPHH1) (Protein SUPPRESSOR OF elf3 20) DISRUPTION PHENOTYPE: Prevents the shortening of period at 27 degrees Celsius, resulting in a long period phenotype. The double mutant cry1 cry2 is impaired in blue light signaling, resulting in long-period, lower-amplitude oscillations at 12 and 17 degrees Celsius and completely abolishing rhythms at 27 degrees Celsius (PubMed:23511208). Plants show reduced root and hypocotyl elongation in an anion channels activation-dependent manner at the plasma membrane, as well a reduced anthocyanin accumulation in blue light (PubMed:8528277, PubMed:12324610, PubMed:16703358, PubMed:21511871, PubMed:21511872, PubMed:9765547). Impaired blue/UV-A wavelengths-mediated inhibition of shoot regeneration (PubMed:22681544). Impaired detection of blue/green ratio in light leading to abnormal inhibition of hypocotyl growth (PubMed:20668058). Reduced attenuating effect of high fluence rates of blue light. This phenotype is stronger in the cry1 cry2 double mutant. Slow rate of curvature at low fluence rates of blue light in cry1 cry2 (PubMed:12857830). Lower anthocyanin accumulation in the phyB cry1 double mutant exposed to far-red light. Reduced chlorophyll levels in the phyB cry1 double mutant exposed to red light. In blue light, impaired cotyledon unfolding and smaller cotyledons, longer hypocotyls and less chlorophyll (PubMed:9733523). Impaired accumulation of reactive oxygen species (ROS) in double mutant cry1 cry2 exposed to high-intensity blue light (PubMed:25728686). Altered blue-light-triggered and singlet oxygen-mediated programmed cell death (PCD) (PubMed:17075038). The double mutant cry1 cry2 exhibits a reduced impact of near-null magnetic field on flowering in lower blue light intensity and short days (PubMed:26095447). Reduced hyponastic growth (differential growth-driven upward leaf movement) in low blue light fluence (PubMed:19558423). The double mutant cry1 cry2 is hyposensitive to the strigolactone analog GR24 (PubMed:24126495). The mutant cry1 exposed to a background of red light show severely impaired stomatal opening responses to blue light. The double mutant cry1 cry2 has reduced stomatal conductance, transpiration, and photosynthesis, particularly under the high irradiance of full sunlight at midday, associated with elevated abscisic acid levels (PubMed:22147516). The cry1 mutants grown in complete darkness have premature opening of the hypocotyl hook (PubMed:22855128). Reduced expression of nuclear genes encoding photoprotective components in response to extreme high light (PubMed:22786870). Reduced shade avoidance syndrome (SAS) when exposed to blue light attenuation (PubMed:21457375). Reduced growth at warm ambient temperatures (PubMed:21265897). Down-regulated local resistance and systemic acquired resistance (SAR) to Pseudomonas syringae pv. tomato (Pst.) DC3000 under continuous light conditions, leading to pathogen proliferation (PubMed:20053798). When grown in blue light, increased growth of lateral roots and reduced sensitivity to auxin (IAA) on this phenotype (PubMed:20133010). {ECO:0000269|PubMed:12324610, ECO:0000269|PubMed:12857830, ECO:0000269|PubMed:16703358, ECO:0000269|PubMed:17075038, ECO:0000269|PubMed:19558423, ECO:0000269|PubMed:20053798, ECO:0000269|PubMed:20133010, ECO:0000269|PubMed:20668058, ECO:0000269|PubMed:21265897, ECO:0000269|PubMed:21457375, ECO:0000269|PubMed:21511871, ECO:0000269|PubMed:21511872, ECO:0000269|PubMed:22147516, ECO:0000269|PubMed:22681544, ECO:0000269|PubMed:22786870, ECO:0000269|PubMed:22855128, ECO:0000269|PubMed:23511208, ECO:0000269|PubMed:24126495, ECO:0000269|PubMed:25728686, ECO:0000269|PubMed:26095447, ECO:0000269|PubMed:8528277, ECO:0000269|PubMed:9733523, ECO:0000269|PubMed:9765547}.,DISRUPTION PHENOTYPE: Plants show increased root elongation in blue light (PubMed:16703358, PubMed:21511872). Reduced attenuating effect of high fluence rates of blue light in the cry1 cry2 double mutant. Slow rate of curvature at low fluence rates of blue light in cry1 cry2 (PubMed:12857830). The double mutant cry1 cry2 exhibits a reduced impact of near-null magnetic field on flowering in lower blue light intensity and short days (PubMed:26095447). Little detectable phenotype on circadian clock in blue light (BL). The double mutant cry1 cry2 is impaired in blue light signaling, resulting in long-period, lower-amplitude oscillations at 12 and 17 degrees Celsius and completely abolishing rhythms at 27 degrees Celsius (PubMed:23511208). Reduced hyponastic growth (differential growth-driven upward leaf movement) in low blue light fluence (PubMed:19558423). The double mutant cry1 cry2 is hyposensitive to the strigolactone analog GR24 (PubMed:24126495). The mutant cry2 exposed to a background of red light show severely impaired stomatal opening responses to blue light. The double mutant cry1 cry2 has reduced stomatal conductance, transpiration, and photosynthesis, particularly under the high irradiance of full sunlight at midday, associated with elevated abscisic acid levels (PubMed:22147516). Mutation sel20 suppresses the inhibitory effect of continuous light (LL) on the hypocotyl elongation of elf3-1. The double mutant elf3 sel20 exhibits a late-flowering phenotype (PubMed:21296763). Impaired chromatin decondensation during the floral transition and in low light conditions (PubMed:20935177). Increased sensitivity to turnip crinkle virus (TCV) and associated with reduced HRT levels and stability, and characterized by hypersensitive response (HR) symptoms (PubMed:20624951). {ECO:0000269|PubMed:12857830, ECO:0000269|PubMed:16703358, ECO:0000269|PubMed:19558423, ECO:0000269|PubMed:20624951, ECO:0000269|PubMed:20935177, ECO:0000269|PubMed:21296763, ECO:0000269|PubMed:21511872, ECO:0000269|PubMed:22147516, ECO:0000269|PubMed:23511208, ECO:0000269|PubMed:24126495, ECO:0000269|PubMed:26095447}. In contrast to wild type blue light does not inhibit hypocotyl elongation in the double mutant.,Unlike wild type mutant seedlings in higher light conditions (12 μmol.m-2.sec-1) respond to increasing concerntrations of benzylaminopurine (BAP). At lower light intensities or in darkness cytokinins caused identical growth inhibition in both wild-type and double mutant seedlings. Long hypocotyl-A. Cashmore-1993,Late flowering-A. Cashmore-1998 FUNCTION: Photoreceptor that mediates primarily blue light inhibition of hypocotyl elongation and photoperiodic control of floral initiation, and regulates other light responses, including circadian rhythms, tropic growth, stomata opening, guard cell development, root development, bacterial and viral pathogen responses, abiotic stress responses, cell cycles, programmed cell death, apical dominance, fruit and ovule development, seed dormancy, and magnetoreception. Photoexcited cryptochromes interact with signaling partner proteins to alter gene expression at both transcriptional and post-translational levels and, consequently, regulate the corresponding metabolic and developmental programs (PubMed:21841916). Blue-light absorbing flavoprotein that activates reversible flavin photoreduction via an electron transport chain comprising a tryptophan triad (W-324, W-377 and W-400), accompanied by a large conformational change upon photoexcitation, or via an alternative electron transport that involves small metabolites, including NADPH, NADH, and ATP. The half-life of the activated signaling state is about 5 minutes (PubMed:26313597, PubMed:25157750, PubMed:23398192, PubMed:21875594, PubMed:21467031). Also involved in the detection of blue/green ratio in light (shade under leaf canopies) and subsequent adaptations on plant growth and development (PubMed:20668058). In darkness, the dark reoxidation of flavin occurs and leads to inactivated state (PubMed:21467031, PubMed:23398192). Perceives low blue light (LBL) and responds by directly contacting two bHLH transcription factors, PIF4 and PIF5, at chromatin on E-box variant 5'-CA[CT]GTG-3' to promote their activity and stimulate specific gene expression to adapt global physiology (e.g. hypocotyl elongation and hyponastic growth in low blue light) (PubMed:26724867, PubMed:19558423). When activated by high-intensity blue light, catalyzes direct enzymatic conversion of molecular oxygen O(2) to reactive oxygen species (ROS) and hydrogen peroxide H(2)O(2) in vitro. ROS accumulation upon activation by blue light leads to cell death in protoplasts (PubMed:25728686). Seems essential for blue-light-triggered and singlet oxygen-mediated programmed cell death (PCD) (PubMed:17075038). Required for the induction of nuclear genes encoding photoprotective components by GATA24 and GATA28 in extreme light intensities that exceed the electron utilization capacity of the chloroplast (PubMed:22786870). Involved in shortening the circadian clock period, especially at 27 degrees Celsius, in blue light (BL) and required to maintain clock genes expression rhythm (PubMed:23511208). Mediates blue light-induced gene expression and hypocotyl elongation through the inhibition of COP1-mediated degradation of the transcription factors BIT1 and HY5 and via the activation of anion channels at the plasma membrane, probably via auxin signaling (PubMed:21511872, PubMed:21511871, PubMed:16093319, PubMed:18397371, PubMed:12324610, PubMed:8528277, PubMed:9765547, PubMed:25721730). Required for the hypocotyl hook formation in darkness (PubMed:22855128). Involved in blue light-dependent stomatal opening, CHS gene expression, transpiration, inhibition of stem growth and increase of root growth, probably by regulating abscisic acid (ABA) (PubMed:22147516, PubMed:16093319, PubMed:16703358, PubMed:7756321, PubMed:9565033). Prevents lateral roots growth by inhibiting auxin transport (PubMed:20133010). Necessary for shade avoidance syndrome (SAS), characterized by leaf hyponasty and reduced lamina/petiole ratio, when exposed to blue light attenuation (PubMed:21457375). Together with phototropins, involved in phototropism regulation by various blue light fluence; blue light attenuates phototropism in high fluence rates (100 umol.m-2.s-1) but enhances phototropism in low fluence rates (<1.0 umol.m-2.s-1) (PubMed:12857830). Required for blue/UV-A wavelengths-mediated inhibition of explants shoot regeneration in vitro (e.g. new shoot apical meristems regeneration from excised cotyledons) (PubMed:22681544). Modulates anthocyanin accumulation in a PHYA-dependent manner in far-red-light. Acts as a PHYA/PHYB-dependent modulator of chlorophyll accumulation in red light. Contributes to most blue light deetiolation responses (PubMed:9733523, PubMed:8528277). May act as a chemical magnetoreceptor, via magnetically sensitive kinetics and quantum yields of photo-induced flavin / tryptophan radical pairs (PubMed:22421133). The effect of near-null magnetic field on flowering is altered by changes of blue light cycle and intensity in a CRY1/CRY2-dependent manner (PubMed:26095447). Involved in the strigolactone signaling that regulates hypocotyl growth in response to blue light (PubMed:24126495). Modulates temperature-dependent growth and physiology maintenance, especially at warm ambient temperatures, via HFR1-dependent activity (PubMed:21265897). {ECO:0000269|PubMed:12324610, ECO:0000269|PubMed:12857830, ECO:0000269|PubMed:16093319, ECO:0000269|PubMed:16703358, ECO:0000269|PubMed:17075038, ECO:0000269|PubMed:18397371, ECO:0000269|PubMed:19558423, ECO:0000269|PubMed:20133010, ECO:0000269|PubMed:20668058, ECO:0000269|PubMed:21265897, ECO:0000269|PubMed:21457375, ECO:0000269|PubMed:21467031, ECO:0000269|PubMed:21511871, ECO:0000269|PubMed:21511872, ECO:0000269|PubMed:21875594, ECO:0000269|PubMed:22147516, ECO:0000269|PubMed:22421133, ECO:0000269|PubMed:22681544, ECO:0000269|PubMed:22786870, ECO:0000269|PubMed:22855128, ECO:0000269|PubMed:23398192, ECO:0000269|PubMed:23511208, ECO:0000269|PubMed:24126495, ECO:0000269|PubMed:25157750, ECO:0000269|PubMed:25721730, ECO:0000269|PubMed:25728686, ECO:0000269|PubMed:26095447, ECO:0000269|PubMed:26313597, ECO:0000269|PubMed:26724867, ECO:0000269|PubMed:7756321, ECO:0000269|PubMed:8528277, ECO:0000269|PubMed:9565033, ECO:0000269|PubMed:9733523, ECO:0000269|PubMed:9765547, ECO:0000303|PubMed:21841916}.; FUNCTION: Implicated in promoting R protein-mediated resistance to Pseudomonas syringae pv. tomato (Pst.) DC3000 under continuous light conditions. Promotes systemic acquired resistance (SAR) and PR gene expression triggered by P. syringae. {ECO:0000269|PubMed:20053798}.,FUNCTION: Photoreceptor that mediates primarily blue light inhibition of hypocotyl elongation and photoperiodic control of floral initiation, and regulates other light responses, including circadian rhythms, tropic growth, stomata opening, guard cell development, root development, bacterial and viral pathogen responses, abiotic stress responses, cell cycles, programmed cell death, apical dominance, fruit and ovule development, seed dormancy, and magnetoreception. Photoexcited cryptochromes interact with signaling partner proteins to alter gene expression at both transcriptional and post-translational levels and, consequently, regulate the corresponding metabolic and developmental programs (PubMed:21841916). Blue-light absorbing flavoprotein that activates reversible flavin photoreduction via an electron transport chain comprising a tryptophan triad (W-321, W-374 and W-397), or via an alternative electron transport that involves small metabolites, including NADPH, NADH, and ATP. The half-life of the activated signaling state is about 16 minutes (PubMed:25428980, PubMed:23398192). Perceives low blue light (LBL) and responds by directly contacting two bHLH transcription factors, PIF4 and PIF5, at chromatin on E-box variant 5'-CA[CT]GTG-3' to promote their activity and stimulate specific gene expression to adapt global physiology (e.g. hypocotyl elongation and hyponastic growth in low blue light) (PubMed:26724867, PubMed:19558423). In response to blue light, binds to CIB proteins (e.g. BHLH63/CIB1 and BHLH76/CIB5) to activates transcription and floral initiation (PubMed:24130508). Mediates blue light-induced gene expression, floral initiation and hypocotyl elongation through the interaction with SPA1 that prevents formation of SPA1/COP1 complex but stimulates COP1 binding, and thus inhibits COP1-mediated degradation of transcription factors (e.g. CO and HY5) (PubMed:21514160, PubMed:21511872, PubMed:16093319). Promotes flowering time in continuous light (LL) (PubMed:21296763). Involved in shortening the circadian clock period, especially at 27 degrees Celsius, in blue light (BL). Required to maintain clock genes expression rhythm (PubMed:23511208). Triggers nuclear accumulation of ROS in response to blue light illumination (PubMed:26179959). Involved in blue light-dependent stomatal opening, transpiration and inhibition of stem and root growth, probably by regulating abscisic acid (ABA) (PubMed:22147516, PubMed:16093319, PubMed:16703358, PubMed:9482948, PubMed:9565033). Regulates the timing of flowering by promoting the expression of 'FLOWERING LOCUS T' (FT) in vascular bundles. Negatively regulated by 'FLOWERING LOCUS C' (FLC) (PubMed:14605222, PubMed:17259260). General positive regulator of reversible low light-induced chromatin decompaction (PubMed:20935177). Involved in triggering chromatin decondensation during floral transition (PubMed:17470059). Together with phototropins, involved in phototropism regulation by various blue light fluence; blue light attenuates phototropism in high fluence rates (100 umol.m-2.s-1) but enhances phototropism in low fluence rates (<1.0 umol.m-2.s-1) (PubMed:12857830). The effect of near-null magnetic field on flowering is altered by changes of blue light cycle and intensity in a CRY1/CRY2-dependent manner (PubMed:26095447). Involved in the strigolactone signaling that regulates hypocotyl growth in response to blue light (PubMed:24126495). {ECO:0000269|PubMed:12857830, ECO:0000269|PubMed:14605222, ECO:0000269|PubMed:16093319, ECO:0000269|PubMed:16703358, ECO:0000269|PubMed:17259260, ECO:0000269|PubMed:17470059, ECO:0000269|PubMed:19558423, ECO:0000269|PubMed:20935177, ECO:0000269|PubMed:21296763, ECO:0000269|PubMed:21511872, ECO:0000269|PubMed:21514160, ECO:0000269|PubMed:22147516, ECO:0000269|PubMed:23398192, ECO:0000269|PubMed:23511208, ECO:0000269|PubMed:24126495, ECO:0000269|PubMed:24130508, ECO:0000269|PubMed:25428980, ECO:0000269|PubMed:26095447, ECO:0000269|PubMed:26179959, ECO:0000269|PubMed:26724867, ECO:0000269|PubMed:9482948, ECO:0000269|PubMed:9565033, ECO:0000303|PubMed:21841916}.; FUNCTION: Confers resistance to turnip crinkle virus (TCV) by preventing COP1-mediated proteasome-mediated degradation of RPP8/HRT, thus promoting its stability in light. Exposure to darkness or blue-light induces degradation of CRY2, and in turn of RPP8/HRT, resulting in susceptibility to TCV. {ECO:0000269|PubMed:20624951}. MISCELLANEOUS: Phosphorylation of the C-terminal tail and resulting derepression of NC80 domain may both depend on homodimerization. ARA:GQT-2162-MONOMER;,ARA:GQT-395-MONOMER; 76695,69457 Cryptochrome-1 (AtCry) (Atcry1) (Blue light photoreceptor) (Protein BLUE LIGHT UNINHIBITED 1) (Protein ELONGATED HYPOCOTYL 4) (Protein OUT OF PHASE 2) (OOP2),Cryptochrome-2 (Atcry2) (Blue light photoreceptor) (Protein PHR homolog 1) (AtPHH1) (Protein SUPPRESSOR OF elf3 20) cytoplasm [GO:0005737]; nuclear body [GO:0016604]; nucleus [GO:0005634]; PML body [GO:0016605]; ATP binding [GO:0005524]; blue light photoreceptor activity [GO:0009882]; FAD binding [GO:0071949]; identical protein binding [GO:0042802]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; protein kinase activity [GO:0004672]; anthocyanin-containing compound metabolic process [GO:0046283]; auxin transport [GO:0060918]; blue light signaling pathway [GO:0009785]; circadian regulation of calcium ion oscillation [GO:0010617]; circadian rhythm [GO:0007623]; defense response [GO:0006952]; detection of light stimulus [GO:0009583]; flavin adenine dinucleotide metabolic process [GO:0072387]; negative regulation of lateral root development [GO:1901332]; oxidation-reduction process [GO:0055114]; photomorphogenesis [GO:0009640]; photoprotection [GO:0010117]; phototropism [GO:0009638]; plant organ development [GO:0099402]; positive regulation of anion channel activity [GO:1901529]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of shade avoidance [GO:1902448]; positive regulation of systemic acquired resistance [GO:1901672]; protein autophosphorylation [GO:0046777]; protein-chromophore linkage [GO:0018298]; regulation of circadian rhythm [GO:0042752]; regulation of hydrogen peroxide metabolic process [GO:0010310]; regulation of leaf morphogenesis [GO:1901371]; regulation of meristem growth [GO:0010075]; regulation of reactive oxygen species metabolic process [GO:2000377]; regulation of unidimensional cell growth [GO:0051510]; response to absence of light [GO:0009646]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to high light intensity [GO:0009644]; response to light stimulus [GO:0009416]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; response to magnetism [GO:0071000]; response to red light [GO:0010114]; response to strigolactone [GO:1902347]; response to water deprivation [GO:0009414]; singlet oxygen-mediated programmed cell death [GO:0010343]; stomatal movement [GO:0010118],cytoplasm [GO:0005737]; nuclear body [GO:0016604]; nucleus [GO:0005634]; PML body [GO:0016605]; vacuole [GO:0005773]; ATP binding [GO:0005524]; blue light photoreceptor activity [GO:0009882]; FAD binding [GO:0071949]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; chromatin organization [GO:0006325]; chromatin remodeling [GO:0006338]; circadian regulation of calcium ion oscillation [GO:0010617]; circadian rhythm [GO:0007623]; covalent chromatin modification [GO:0016569]; defense response to virus [GO:0051607]; flavin adenine dinucleotide metabolic process [GO:0072387]; long-day photoperiodism, flowering [GO:0048574]; phototropism [GO:0009638]; positive regulation of flower development [GO:0009911]; positive regulation of reactive oxygen species metabolic process [GO:2000379]; protein-chromophore linkage [GO:0018298]; regulation of circadian rhythm [GO:0042752]; regulation of flower development [GO:0009909]; regulation of leaf morphogenesis [GO:1901371]; regulation of meristem growth [GO:0010075]; regulation of photoperiodism, flowering [GO:2000028]; response to absence of light [GO:0009646]; response to blue light [GO:0009637]; response to light stimulus [GO:0009416]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; response to strigolactone [GO:1902347]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118] TISSUE SPECIFICITY: Widely expressed (PubMed:8953250). Expressed in the aerial tissues (e.g. cotyledons and leaf primordia), but not detected in the roots (PubMed:11743105). {ECO:0000269|PubMed:11743105, ECO:0000269|PubMed:8953250}.,TISSUE SPECIFICITY: Mostly expressed in the shoot meristems and root tips, and, to a lower extent, in the cotyledons, hypocotyls, and roots. {ECO:0000269|PubMed:11743105}. locus:2138728;,locus:2018254; AT4G08920,AT1G04400 cryptochrome Cryptochrome 1a (Os02g0573200 protein),Cryptochrome 2 (Os02g0625000 protein) (cDNA clone:J013042O16, full insert sequence),Os02g0625000 protein (Putative cryptochrome 2),Os04g0452100 protein Q6YXC2,Q852P4,Q6K1S1,A0A0P0WAS3 Q6YXC2_ORYSJ,Q852P4_ORYSJ,Q6K1S1_ORYSJ,A0A0P0WAS3_ORYSJ Os02g0573200 OSJNBb0046L23.10 OSNPB_020573200,OsCRY2 B1215B07.27-1 Os02g0625000 OsJ_07585 OSNPB_020625000,B1215B07.27-2 Os02g0625000 OSNPB_020625000,Os04g0452100 OSNPB_040452100 ENOG411DRR4 RAD9 Q058K5,F4J7B7,F4J7B9 Q058K5_ARATH,F4J7B7_ARATH,F4J7B9_ARATH At3g05480 (Cell cycle checkpoint control protein family),Cell cycle checkpoint control protein family 48021,49933,48092 At3g05480 (Cell cycle checkpoint control protein family),Cell cycle checkpoint control protein family checkpoint clamp complex [GO:0030896]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281],checkpoint clamp complex [GO:0030896]; 3'-5' exonuclease activity [GO:0008408]; cellular response to ionizing radiation [GO:0071479]; DNA repair [GO:0006281]; DNA replication checkpoint [GO:0000076]; intra-S DNA damage checkpoint [GO:0031573]; nucleic acid phosphodiester bond hydrolysis [GO:0090305]; regulation of DNA repair [GO:0006282] locus:2079797; AT3G05480 Cell cycle checkpoint control protein Os03g0345100 protein (Fragment) A0A0P0VXF0 A0A0P0VXF0_ORYSJ Os03g0345100 OSNPB_030345100 ENOG411DRR5 rbcL P93292,O03042,F4INE2 M280_ARATH,RBL_ARATH,F4INE2_ARATH Putative uncharacterized mitochondrial protein AtMg00280 (ORF110a),Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39),Ribulose bisphosphate carboxylase large chain, catalytic domain-containing protein FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. {ECO:0000255|HAMAP-Rule:MF_01338}. "MISCELLANEOUS: Seems to correspond to a fragment of a former RuBisCO gene.; MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07732) is not demonstrated.,MISCELLANEOUS: The basic functional RuBisCO is composed of a large chain homodimer in a ""head-to-tail"" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric ""cap"" on each end of the ""barrel"". {ECO:0000255|HAMAP-Rule:MF_01338}." ARA:AT2G07732-MONOMER;,ARA:ATCG00490-MONOMER;MetaCyc:ATCG00490-MONOMER; 4.1.1.39; Carbon fixation in photosynthetic organisms (00710),Microbial metabolism in diverse environments (01120),Glyoxylate and dicarboxylate metabolism (00630),Metabolic pathways (01100) 4.1.1.39 12664,52955,13067 Putative uncharacterized mitochondrial protein AtMg00280 (ORF110a),Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39),Ribulose bisphosphate carboxylase large chain, catalytic domain-containing protein chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid small ribosomal subunit [GO:0000312]; magnesium ion binding [GO:0000287],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; magnesium ion binding [GO:0000287]; monooxygenase activity [GO:0004497]; ribulose-bisphosphate carboxylase activity [GO:0016984]; photorespiration [GO:0009853]; reductive pentose-phosphate cycle [GO:0019253]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686],chloroplast stroma [GO:0009570]; plastid small ribosomal subunit [GO:0000312]; magnesium ion binding [GO:0000287] locus:504954511;,locus:504954672;,locus:3437201; ATMG00280,ATCG00490,AT2G07732 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 15-bisphosphate the primary event in carbon dioxide fixation as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39),Os10g0356000 protein (Putative rbcL; RuBisCO large subunit from chromosome 10 chloroplast insertion),Os01g0899425 protein (Fragment),Os01g0791033 protein,Os12g0207600 protein P0C512,Q8S6F2,A0A0P0VBL9,A0A0P0V969,A0A0P0Y838 RBL_ORYSJ,Q8S6F2_ORYSJ,A0A0P0VBL9_ORYSJ,A0A0P0V969_ORYSJ,A0A0P0Y838_ORYSJ rbcL LOC_Osp1g00420 Nip064,OSJNBb0075K12.39 Os10g0356000 OSJNAb0075K12.23 OSNPB_100356000,Os01g0899425 OSNPB_010899425,Os01g0791033 OSNPB_010791033,Os12g0207600 OSNPB_120207600 FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. "MISCELLANEOUS: The basic functional RuBisCO is composed of a large chain homodimer in a ""head-to-tail"" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric ""cap"" on each end of the ""barrel"".; MISCELLANEOUS: NADPH and 6-phosphogluconate function as positive effectors to promote enzyme activation. {ECO:0000305|PubMed:22609438}." ENOG411DRR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q7XEM4 Q7XEM4_ORYSJ Os10g0416200 LOC_Os10g28060 OSNPB_100416200 ENOG411DRR7 PCMP-E95 Q9LIE7 PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150, chloroplastic 91850 Pentatricopeptide repeat-containing protein At3g22150, chloroplastic chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; 4-aminobutyrate transaminase activity [GO:0003867]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA modification [GO:1900865]; mitochondrial mRNA modification [GO:0080156] locus:2090444; AT3G22150 Pentatricopeptide repeat-containing protein OSJNBa0041A02.15 protein (Os04g0602600 protein) Q7XSS0 Q7XSS0_ORYSJ Os04g0602600 Os04g0602600 OSJNBa0041A02.15 OSNPB_040602600 ENOG411DRR8 ABCC4,ABCC14 Q7DM58,Q9LZJ5 AB4C_ARATH,AB14C_ARATH ABC transporter C family member 4 (ABC transporter ABCC.4) (AtABCC4) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 4) (Glutathione S-conjugate-transporting ATPase 4) (Multidrug resistance-associated protein 4),ABC transporter C family member 14 (ABC transporter ABCC.14) (AtABCC14) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 10) (Glutathione S-conjugate-transporting ATPase 10) (Multidrug resistance-associated protein 10) DISRUPTION PHENOTYPE: Plants have larger stomatal aperture and increased drought susceptibility, but are not affected by the ABA signal transduction pathway. {ECO:0000269|PubMed:15225287}. FUNCTION: Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. {ECO:0000269|PubMed:15225287}.,FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}. ARA:AT2G47800-MONOMER;,ARA:AT3G62700-MONOMER; 3.6.3.44 169080,172137 ABC transporter C family member 4 (ABC transporter ABCC.4) (AtABCC4) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 4) (Glutathione S-conjugate-transporting ATPase 4) (Multidrug resistance-associated protein 4),ABC transporter C family member 14 (ABC transporter ABCC.14) (AtABCC14) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 10) (Glutathione S-conjugate-transporting ATPase 10) (Multidrug resistance-associated protein 10) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; drug transmembrane transport [GO:0006855]; response to nematode [GO:0009624]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; stomatal movement [GO:0010118]; transmembrane transport [GO:0055085],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Ubiquitous. High expression in the guard cells. {ECO:0000269|PubMed:12430019, ECO:0000269|PubMed:15225287}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}. locus:2043268;,locus:2081755; AT2G47800,AT3G62700 ABC transporter C family member MRP-like ABC transporter (Os01g0356400 protein) (Putative AtMRP4) (cDNA, clone: J075142E09, full insert sequence) Q8GU64 Q8GU64_ORYSJ mrp8 Os01g0356400 B1157F09.14 OSNPB_010356400 ENOG411DRR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os01g0641800 protein A0A0P0V5Q6 A0A0P0V5Q6_ORYSJ Os01g0641800 OSNPB_010641800 ENOG411DRRA Q9C9W8 Q9C9W8_ARATH Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase; 41514-39166 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) ARA:AT1G68040-MONOMER; 40486 Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase; 41514-39166 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) methyltransferase activity [GO:0008168] locus:2200186; AT1G68040 Methyltransferase NA NA NA NA NA NA NA ENOG411DRRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ArfGap Os02g0208900 protein (ZIGA2 protein-like) (cDNA clone:J023084M01, full insert sequence),Os02g0208900 protein (Rev interacting-like protein-like),Os02g0208900 protein (Fragment) Q6H8D8,Q6H8D7,A0A0P0VGB7 Q6H8D8_ORYSJ,Q6H8D7_ORYSJ,A0A0P0VGB7_ORYSJ OJ1006_A02.21-1 OJ1003_F05.38-1 Os02g0208900 OsJ_05850 OSNPB_020208900,OJ1006_A02.21-2 OJ1003_F05.38-2 Os02g0208900 OSNPB_020208900,Os02g0208900 OSNPB_020208900 ENOG411DRRC CAD1 Q9CAI3 CADH1_ARATH Probable cinnamyl alcohol dehydrogenase 1 (AtCAD1) (EC 1.1.1.195) FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000250|UniProtKB:O49482}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. ARA:AT1G72680-MONOMER; 1.1.1.195 38671 Probable cinnamyl alcohol dehydrogenase 1 (AtCAD1) (EC 1.1.1.195) cytosol [GO:0005829]; cinnamyl-alcohol dehydrogenase activity [GO:0045551]; sinapyl alcohol dehydrogenase activity [GO:0052747]; zinc ion binding [GO:0008270]; lignin biosynthetic process [GO:0009809] TISSUE SPECIFICITY: Expressed in the vasculature of the primary root and elongation regions. Expressed in the hypocotyl, cotyledon veins, vasculature of the first rosette leaves, hydathodes and at the base of the trichomes. In stems, expressed in the vascular cambium, interfascicular cambium developing xylem and cortex region. Expressed in the style, the vascular strands of the sepals pollen and anthers in flowers, in the abscission and stigmatic regions of siliques and seed funicule and testa. {ECO:0000269|PubMed:16832689, ECO:0000269|PubMed:17467016}. locus:2030210; AT1G72680 Cinnamyl alcohol dehydrogenase Probable cinnamyl alcohol dehydrogenase 1 (OsCAD1) (EC 1.1.1.195),Putative cinnamyl alcohol dehydrogenase 4 (OsCAD4) (EC 1.1.1.195) Q8H859,Q2R114 CADH1_ORYSJ,CADH4_ORYSJ CAD1 Os10g0194200 LOC_Os10g11810 OsJ_30963 OSJNBb0005F01.4,CAD4 Os11g0622800 LOC_Os11g40690 FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000250|UniProtKB:Q9SJ25}.,FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000250|UniProtKB:O49482}. ENOG411DRRD BHLH128 Q8H102 BH128_ARATH Transcription factor bHLH128 (Basic helix-loop-helix protein 128) (AtbHLH128) (bHLH 128) (Transcription factor EN 74) (bHLH transcription factor bHLH128) 38951 Transcription factor bHLH128 (Basic helix-loop-helix protein 128) (AtbHLH128) (bHLH 128) (Transcription factor EN 74) (bHLH transcription factor bHLH128) cytosol [GO:0005829]; nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of stomatal movement [GO:0010119]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366] locus:505006103; AT1G05805 transcription factor Os01g0900800 protein (Putative helix-loop-helix protein 1A) (cDNA clone:J013149F02, full insert sequence) Q5N8U8 Q5N8U8_ORYSJ P0035F12.17-1 Os01g0900800 OSNPB_010900800 ENOG411DRRF SWEET12,SWEET13,SWEET11,SWEET14,SWEET10 O82587,Q9FGQ2,Q9SMM5,Q9SW25,Q9LUE3 SWT12_ARATH,SWT13_ARATH,SWT11_ARATH,SWT14_ARATH,SWT10_ARATH Bidirectional sugar transporter SWEET12 (AtSWEET12) (MtN3-like protein) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 12),Bidirectional sugar transporter SWEET13 (AtSWEET13) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 13),Bidirectional sugar transporter SWEET11 (AtSWEET11) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 11),Bidirectional sugar transporter SWEET14 (AtSWEET14) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 14),Bidirectional sugar transporter SWEET10 (AtSWEET10) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 10) DISRUPTION PHENOTYPE: Under high-light conditions, plants lacking both SWEET11 and SWEET12 are defective in phloem loading and display slower growth, mild chlorosis, and high levels of starch and sugar accumulation in leaves (PubMed:22157085). In plants lacking SWEET11, SWEET12 and SWEET15, severe seed defects, which include retarded embryo development, reduced seed weight, and reduced starch and lipid content, causing a wrinkled seed phenotype. Altered sucrose efflux involved in the transfer of sugars from seed coat to embryos thus leading to starch accumulation in the seed coat but not in the embryo (PubMed:25794936). {ECO:0000269|PubMed:22157085, ECO:0000269|PubMed:25794936}. FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. Involved in phloem loading by mediating export from parenchyma cells feeding H(+)-coupled import into the sieve element/companion cell complex, thus contributing to the sucrose migration from sites of synthesis in the mesophyll to the phloem (PubMed:22157085, PubMed:25988582). Contributes to seed filling by triggering sucrose efflux involved in the transfer of sugars from seed coat to embryos (PubMed:25988582). {ECO:0000269|PubMed:22157085, ECO:0000269|PubMed:25794936, ECO:0000303|PubMed:25988582}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. Involved in nurturing the male gametophyte (PubMed:25988582). {ECO:0000269|PubMed:22157085, ECO:0000303|PubMed:25988582}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. Involved in phloem loading by mediating export from parenchyma cells feeding H(+)-coupled import into the sieve element/companion cell complex, thus contributing to the sucrose migration from sites of synthesis in the mesophyll to the phloem (PubMed:22157085, PubMed:24027245, PubMed:25988582). Contributes to seed filling by triggering sucrose efflux involved in the transfer of sugars from seed coat to embryos (PubMed:25988582). {ECO:0000269|PubMed:22157085, ECO:0000269|PubMed:24027245, ECO:0000269|PubMed:25794936, ECO:0000303|PubMed:25988582}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000269|PubMed:22157085}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. R-ATH-189200; 31487,32504,31921,30969,32763 Bidirectional sugar transporter SWEET12 (AtSWEET12) (MtN3-like protein) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 12),Bidirectional sugar transporter SWEET13 (AtSWEET13) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 13),Bidirectional sugar transporter SWEET11 (AtSWEET11) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 11),Bidirectional sugar transporter SWEET14 (AtSWEET14) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 14),Bidirectional sugar transporter SWEET10 (AtSWEET10) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 10) integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; embryo development ending in seed dormancy [GO:0009793]; protein homooligomerization [GO:0051260]; seed maturation [GO:0010431]; sucrose transport [GO:0015770],integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; gibberellin transmembrane transporter activity [GO:1905201]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; anther dehiscence [GO:0009901]; callose deposition in cell wall [GO:0052543]; gibberellic acid transmembrane transport [GO:1905200]; pollen development [GO:0009555]; seed growth [GO:0080112]; sucrose transport [GO:0015770],integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; gibberellin transmembrane transporter activity [GO:1905201]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; anther dehiscence [GO:0009901]; gibberellic acid transmembrane transport [GO:1905200]; seed growth [GO:0080112]; sucrose transport [GO:0015770],integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; sucrose transport [GO:0015770] DEVELOPMENTAL STAGE: In developing seeds, accumulates specifically at different stages. At globular stage, present in micropylar end of seed coat, in the endosperm and in the embryo suspensor. At the heart stage, confined to the micropylar end of seed coat. From the linear mature cotyledon stage until mature seed, present in the micropylar end of seed coat as well as in the endosperm. {ECO:0000269|PubMed:25794936}.,DEVELOPMENTAL STAGE: In developing seeds, accumulates specifically at different stages. First observed at the linear mature cotyledon stage until mature seed, mostly in micropylar endosperm and the seed coat. {ECO:0000269|PubMed:25794936}. TISSUE SPECIFICITY: Expressed in leaves, especially in phloem (PubMed:22157085). Expressed in developing seeds (PubMed:25794936). {ECO:0000269|PubMed:22157085, ECO:0000269|PubMed:25794936}.,TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:22157085}. locus:2171721;,locus:2157951;,locus:2114540;,locus:2117263;,locus:2163325; AT5G23660,AT5G50800,AT3G48740,AT4G25010,AT5G50790 bidirectional sugar transporter Bidirectional sugar transporter SWEET13 (OsSWEET13),Bidirectional sugar transporter SWEET14 (OsSWEET14) Q2QR07,Q2R3P9 SWT13_ORYSJ,SWT14_ORYSJ SWEET13 Os12g0476200 LOC_Os12g29220 OsJ_36063,SWEET14 Os11N3 Os11g0508600 LOC_Os11g31190 OsJ_34008 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.; FUNCTION: Confers blight susceptibility (PubMed:25988582). Confers TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae (PubMed:23879865). {ECO:0000269|PubMed:23879865, ECO:0000303|PubMed:25988582}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000269|PubMed:21107422, ECO:0000269|PubMed:22157085}.; FUNCTION: Confers blight susceptibility (PubMed:25988582). Confers TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae (PubMed:23879865). {ECO:0000269|PubMed:23879865, ECO:0000303|PubMed:25988582}. ENOG411DRRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 Os05g0542900 protein (cDNA clone:J033114D17, full insert sequence),Os06g0280100 protein Q65XN4,A0A0P0WVG3 Q65XN4_ORYSJ,A0A0P0WVG3_ORYSJ Os05g0542900 Os05g0542900 OJ1288_A07.5 OSNPB_050542900,Os06g0280100 OSNPB_060280100 ENOG411DRRH ABCC3,NAP5 Q9LK64,Q9FVV9,F4JB38,A0A1I9LTU2 AB3C_ARATH,NAP5_ARATH,F4JB38_ARATH,A0A1I9LTU2_ARATH ABC transporter C family member 3 (ABC transporter ABCC.3) (AtABCC3) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 3) (Glutathione S-conjugate-transporting ATPase 3) (Multidrug resistance-associated protein 3),Probable non-intrinsic ABC protein 5 (MRP-related protein 2),Multidrug resistance-associated protein 3 FUNCTION: Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). {ECO:0000269|PubMed:9681016}. ARA:AT3G13080-MONOMER;,ARA:AT1G71330-MONOMER; 3.6.3.44 168971,35811,124952,168736 ABC transporter C family member 3 (ABC transporter ABCC.3) (AtABCC3) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 3) (Glutathione S-conjugate-transporting ATPase 3) (Multidrug resistance-associated protein 3),Probable non-intrinsic ABC protein 5 (MRP-related protein 2),Multidrug resistance-associated protein 3 apoplast [GO:0048046]; integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; chlorophyll catabolite transmembrane transporter activity [GO:0010290]; glutathione S-conjugate-exporting ATPase activity [GO:0015431]; xenobiotic-transporting ATPase activity [GO:0008559],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019, ECO:0000269|PubMed:9681016}. locus:2090029;,locus:2032303; AT3G13080,AT1G71330 ABC transporter C family member Os01g0173900 protein Q0JQA5 Q0JQA5_ORYSJ Os01g0173900 Os01g0173900 OSNPB_010173900 ENOG411DRRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0631700 protein Q0JL16 Q0JL16_ORYSJ Os01g0631700 Os01g0631700 OsJ_02712 OSNPB_010631700 ENOG411DRRJ Q940Y7,F4JWA5 Q940Y7_ARATH,F4JWA5_ARATH AT5g04480/T32M21_80 (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein),UDP-Glycosyltransferase superfamily protein 119823,118073 AT5g04480/T32M21_80 (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein),UDP-Glycosyltransferase superfamily protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757]; pollen tube development [GO:0048868],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2184437; AT5G04480 Glycosyl transferases group 1 Os10g0546200 protein A0A0P0XWT9 A0A0P0XWT9_ORYSJ Os10g0546200 OSNPB_100546200 ENOG411DRRK NAC038 Q9ZQ25 Q9ZQ25_ARATH NAC domain containing protein 38 (NAM (No apical meristem)-like protein) 35841 NAC domain containing protein 38 (NAM (No apical meristem)-like protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2061082; AT2G24430 NAC domain-containing protein Os09g0497900 protein (cDNA clone:J033095I08, full insert sequence) Q0J0J0 Q0J0J0_ORYSJ Os09g0497900 Os09g0497900 OsJ_29886 OSNPB_090497900 ENOG411DRRM ATG18A,ATG18C,ATG18D,AtATG18a Q93VB2,Q8GYD7,Q0WPK3,A0A1P8B0S0,A0A1I9LQF3,A0A1I9LQF2,F4IZI7 AT18A_ARATH,AT18C_ARATH,AT18D_ARATH,A0A1P8B0S0_ARATH,A0A1I9LQF3_ARATH,A0A1I9LQF2_ARATH,F4IZI7_ARATH Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2),Autophagy-related protein 18c (AtATG18c),Autophagy-related protein 18d (AtATG18d),Autophagy-like protein,Autophagy 18 D-like protein,Transducin/WD40 repeat-like superfamily protein DISRUPTION PHENOTYPE: Mutant is more sensitive to nutrient deprivation conditions and exhibits an early senescence phenotype. Prevents autophagosome formation during starvation. More sensitive to methyl viologen (oxidative stress) treatment and accumulates a higher level of oxidized proteins compared to wild type. High sensitivity to salt and osmotic/drought stresses. Displays an enhanced resistance to the powdery mildew pathogen G.cichoracearum with mildew-induced cell death and an enhanced resistance to P.syringae DC3000 but shows an enhanced susceptibility to infection with necrotrophic A.brassicicola and B.cinerea pathogens. {ECO:0000269|PubMed:15860012, ECO:0000269|PubMed:17098847, ECO:0000269|PubMed:19587533, ECO:0000269|PubMed:21332848, ECO:0000269|PubMed:21395886, ECO:0000269|PubMed:21847024}. FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy by autophagosome formation during nutrient deprivation, senescence and under abiotic stresses, including oxidative, high salt and osmotic stress conditions. Cooperates with jasmonate- and WRKY33-mediated signaling pathways in the regulation of plant defense responses to necrotrophic pathogens. {ECO:0000269|PubMed:15860012, ECO:0000269|PubMed:17098847, ECO:0000269|PubMed:19587533, ECO:0000269|PubMed:21332848, ECO:0000269|PubMed:21395886, ECO:0000269|PubMed:21847024, ECO:0000269|PubMed:22532286}.,FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity). {ECO:0000250}. 46800,43832,43888,29655,40461,37172,43480 Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2),Autophagy-related protein 18c (AtATG18c),Autophagy-related protein 18d (AtATG18d),Autophagy-like protein,Autophagy 18 D-like protein,Transducin/WD40 repeat-like superfamily protein cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; nucleus [GO:0005634]; pre-autophagosomal structure membrane [GO:0034045]; vacuolar membrane [GO:0005774]; phosphatidylinositol-3,5-bisphosphate binding [GO:0080025]; phosphatidylinositol-3-phosphate binding [GO:0032266]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; defense response to fungus [GO:0050832]; leaf senescence [GO:0010150]; nucleophagy [GO:0044804]; positive regulation of autophagy [GO:0010508]; protein lipidation [GO:0006497]; protein localization to pre-autophagosomal structure [GO:0034497]; protein transport [GO:0015031]; response to osmotic stress [GO:0006970]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to starvation [GO:0042594]; response to water deprivation [GO:0009414],cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; pre-autophagosomal structure membrane [GO:0034045]; vacuolar membrane [GO:0005774]; phosphatidylinositol-3,5-bisphosphate binding [GO:0080025]; phosphatidylinositol-3-phosphate binding [GO:0032266]; autophagy of mitochondrion [GO:0000422]; nucleophagy [GO:0044804]; protein lipidation [GO:0006497]; protein localization to pre-autophagosomal structure [GO:0034497]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, stems, flowers and leaves. {ECO:0000269|PubMed:15860012}. locus:2081705;,locus:2058450;,locus:2102614; AT3G62770,AT2G40810,AT3G56440 WD repeat domain phosphoinositide-interacting protein Os05g0169200 protein,Os01g0934000 protein (Putative WD repeat domain 45) (cDNA clone:001-029-C10, full insert sequence),Os01g0168500 protein (cDNA clone:J023134M09, full insert sequence) Q0DKE9,Q8LR61,Q5VQF8 Q0DKE9_ORYSJ,Q8LR61_ORYSJ,Q5VQF8_ORYSJ Os05g0169200 Os05g0169200 OsJ_17274 OSNPB_050169200,Os01g0934000 Os01g0934000 OsJ_04665 OSNPB_010934000 P0423A12.30,Os01g0168500 Os01g0168500 OJ1276_B06.19 OSNPB_010168500 ENOG411DRRN TCP21,TCP7 Q9FTA2,Q9FMX2 TCP21_ARATH,TCP7_ARATH Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION) (Protein CHE),Transcription factor TCP7 DISRUPTION PHENOTYPE: No effect on the period length or phase of the circadian clock. {ECO:0000269|PubMed:19286557}. FUNCTION: Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. 24752,27061 Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION) (Protein CHE),Transcription factor TCP7 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of sequence-specific DNA binding transcription factor activity [GO:0043433]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355]; rhythmic process [GO:0048511]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}. locus:2150803;,locus:2166796; AT5G08330,AT5G23280 Transcription factor Os02g0828566 protein (Transcription factor PCF3-like),Os03g0422702 protein,Os10g0359801 protein (Fragment) Q6K7P2,A0A0P0VZI7,A0A0P0XT62 Q6K7P2_ORYSJ,A0A0P0VZI7_ORYSJ,A0A0P0XT62_ORYSJ Os02g0828566 OSNPB_020828566 P0452F04.45,Os03g0422702 OSNPB_030422702,Os10g0359801 OSNPB_100359801 ENOG411DRRP EMB3114 Q9SJ50,Q8S8E4 Q9SJ50_ARATH,Q8S8E4_ARATH At2g36000/F11F19.9 (Mitochondrial transcription termination factor family protein),AT2G36000 protein (Expressed protein) (Mitochondrial transcription termination factor family protein) Embryo defective; Globular-D. Meinke-2011 37953,36437 At2g36000/F11F19.9 (Mitochondrial transcription termination factor family protein),AT2G36000 protein (Expressed protein) (Mitochondrial transcription termination factor family protein) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380],double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355] locus:2039240; AT2G36000 mTERF Os03g0360600 protein (mTERF family protein, expressed) Q10L33 Q10L33_ORYSJ Os03g0360600 LOC_Os03g24590 Os03g0360600 OSNPB_030360600 ENOG411DRRQ IAA16 O24407 IAA16_ARATH Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 25659 Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] locus:2084933; AT3G04730 auxin-responsive protein Auxin-responsive protein IAA30 (Indoleacetic acid-induced protein 30) P0C132 IAA30_ORYSJ IAA30 Os12g0601300 LOC_Os12g40890 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411DRRR ACS2,ACS1,ACS6 Q06402,Q06429,Q9SAR0 1A12_ARATH,1A11_ARATH,1A16_ARATH 1-aminocyclopropane-1-carboxylate synthase 2 (ACC synthase 2) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 2),1-aminocyclopropane-1-carboxylate synthase-like protein 1,1-aminocyclopropane-1-carboxylate synthase 6 (ACC synthase 6) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 6) Large cotyledons; Long hypocotyl; Slow growth; Tall inflorescence stems-A. Theologis-2009,Large cotyledons; Long hypocotyl; Thin inflorescence stems; Early flowering; Low ethylene levels-A. Theologis-2009,Large cotyledons; Long hypocotyl; Tall inflorescence stems; Early flowering-A. Theologis-2009 FUNCTION: 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene.,FUNCTION: 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Involved in bacterial flagellin-induced ethylene production. {ECO:0000269|PubMed:15539472}. MISCELLANEOUS: The stability of ACS proteins, and the regulation of such stability, play a central role in ethylene biosynthesis.,MISCELLANEOUS: The stability of ACS proteins, and the regulation of such stability, play a central role in ethylene biosynthesis. The phosphorylation of serine residues on the C-terminus increases protein stability. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 1/2. MetaCyc:AT1G01480-MONOMER;,ARA:AT3G61510-MONOMER; 4.4.1.14; 4.4.1.14 55532,55003,55524 1-aminocyclopropane-1-carboxylate synthase 2 (ACC synthase 2) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 2),1-aminocyclopropane-1-carboxylate synthase-like protein 1,1-aminocyclopropane-1-carboxylate synthase 6 (ACC synthase 6) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 6) 1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; pyridoxal phosphate binding [GO:0030170]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835],catalytic activity [GO:0003824]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058],1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; identical protein binding [GO:0042802]; pyridoxal phosphate binding [GO:0030170]; cell division [GO:0051301]; cellular response to iron ion [GO:0071281]; defense response [GO:0006952]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835]; response to auxin [GO:0009733]; response to jasmonic acid [GO:0009753]; response to mechanical stimulus [GO:0009612]; response to oxidative stress [GO:0006979]; response to wounding [GO:0009611]; vasculature development [GO:0001944] TISSUE SPECIFICITY: High in developing leaves and in flowers. Expressed in roots and siliques. {ECO:0000269|PubMed:12968022}.,TISSUE SPECIFICITY: Expressed in young leaves and flowers. Not expressed in roots. {ECO:0000269|PubMed:12968022}.,TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12968022}. locus:2025361;,locus:2082817;,locus:2128298; AT1G01480,AT3G61510,AT4G11280 1-aminocyclopropane-1-carboxylate synthase OSJNBa0011J08.4 protein (Os04g0578000 protein) (cDNA clone:002-105-C04, full insert sequence) Q7XQ85 Q7XQ85_ORYSJ Os04g0578000 Os04g0578000 OSJNBa0011J08.4 OSNPB_040578000 ENOG411DRRS RMR2,RMR6,RMR5 Q8VZ14,F4HZZ4,F4HZZ5 RMR2_ARATH,RMR6_ARATH,RMR5_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 2 (AtRMR2) (ReMembR-H2 protein JR702),Receptor homology region, transmembrane domain- and RING domain-containing protein 6 (AtRMR6),Receptor homology region, transmembrane domain- and RING domain-containing protein 5 (AtRMR5) FUNCTION: Involved in the trafficking of vacuolar proteins. May function as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) (By similarity). {ECO:0000250}. 48811,35285,34916 Receptor homology region, transmembrane domain- and RING domain-containing protein 2 (AtRMR2) (ReMembR-H2 protein JR702),Receptor homology region, transmembrane domain- and RING domain-containing protein 6 (AtRMR6),Receptor homology region, transmembrane domain- and RING domain-containing protein 5 (AtRMR5) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; protein storage vacuole [GO:0000326]; protein storage vacuole membrane [GO:0032586]; metal ion binding [GO:0046872]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; protein storage vacuole membrane [GO:0032586]; metal ion binding [GO:0046872]; protein transport [GO:0015031] locus:2016044;,locus:2824666;,locus:2014726; AT1G71980,AT1G35625,AT1G35630 E3 ubiquitin-protein ligase Receptor homology region, transmembrane domain- and RING domain-containing protein 1 (OsRMR1),Receptor homology region, transmembrane domain- and RING domain-containing protein 2 (OsRMR2),Os03g0167500 protein (Fragment),Os08g0104300 protein Q10R93,Q69U49,A0A0P0VTT6,A0A0P0XAW3,A0A0P0XAX9 RMR1_ORYSJ,RMR2_ORYSJ,A0A0P0VTT6_ORYSJ,A0A0P0XAW3_ORYSJ,A0A0P0XAX9_ORYSJ Os03g0167500 LOC_Os03g07130 OSJNBa0091P11.36,RMR1 Os08g0104300 LOC_Os08g01360 P0015C07.39-1,Os03g0167500 OSNPB_030167500,Os08g0104300 OSNPB_080104300 FUNCTION: Involved in the trafficking of vacuolar proteins. Functions probably as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) by binding the C-terminal vacuolar sorting determinant (VSD) of vacuolar-sorted proteins. {ECO:0000269|PubMed:21493745}.,FUNCTION: Involved in the trafficking of vacuolar proteins. May function as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) (By similarity). {ECO:0000250}. ENOG411DRRT CW7 F4ICZ9,Q9SLU1,F4ICZ7,A0A1P8APP8,A0A1P8APQ0 F4ICZ9_ARATH,Q9SLU1_ARATH,F4ICZ7_ARATH,A0A1P8APP8_ARATH,A0A1P8APQ0_ARATH CW7,At1g59520 (CW7) (CW7 protein),At1g59520 (CW7) 35684,42990,42964,39447,43916 CW7,At1g59520 (CW7) (CW7 protein),At1g59520 (CW7) locus:2202902; AT1G59520 Uncharacterized conserved protein (DUF2045) OSJNBb0006L01.7 protein (Os04g0183100 protein),Os07g0248800 protein,Os10g0102900 protein Q7XMY2,Q7XHS9,A0A0P0XRF6 Q7XMY2_ORYSJ,Q7XHS9_ORYSJ,A0A0P0XRF6_ORYSJ Os04g0183100 OSJNBb0006L01.7 OSNPB_040183100,P0021G06.102 Os07g0248800 OSNPB_070248800 P0639B07.31,Os10g0102900 OSNPB_100102900 ENOG411DRRU YSL4,YSL6 Q6R3K8,Q6R3K6,A0A1P8BD27,A0A1P8BD20 YSL4_ARATH,YSL6_ARATH,A0A1P8BD27_ARATH,A0A1P8BD20_ARATH Probable metal-nicotianamine transporter YSL4 (Protein YELLOW STRIPE LIKE 4) (AtYSL4),Probable metal-nicotianamine transporter YSL6 (Protein YELLOW STRIPE LIKE 6) (AtYSL6),YELLOW STRIPE like 4 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. MISCELLANEOUS: Up-regulated in autophagy mutant.,MISCELLANEOUS: Was also erroneously assigned to At3g27010. {ECO:0000305|PubMed:14593172}. 73575,73573,54014,70878 Probable metal-nicotianamine transporter YSL4 (Protein YELLOW STRIPE LIKE 4) (AtYSL4),Probable metal-nicotianamine transporter YSL6 (Protein YELLOW STRIPE LIKE 6) (AtYSL6),YELLOW STRIPE like 4 integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; transmembrane transporter activity [GO:0022857],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Induced during senescence. {ECO:0000269|PubMed:12114572}. locus:2163036;,locus:2091970; AT5G41000,AT3G27020 transporter Probable metal-nicotianamine transporter YSL6 (Protein YELLOW STRIPE LIKE 6) (OsYSL6),Os04g0390500 protein,Os04g0390500 protein (Fragment) Q7XRV2,A0A0N7KIZ1,A0A0P0WA50 YSL6_ORYSJ,A0A0N7KIZ1_ORYSJ,A0A0P0WA50_ORYSJ YSL6 Os04g0390500 LOC_Os04g32050 OsJ_014022 OSJNBa0055C08.1,Os04g0390500 OSNPB_040390500 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DRRV TOPTELOMERE.1 C0Z286,F4K7W6,Q8GSG8,F4K7W4 C0Z286_ARATH,F4K7W6_ARATH,Q8GSG8_ARATH,F4K7W4_ARATH AT5G01010 protein (Retinal-binding protein),Retinal-binding protein,Retinal-binding protein (Uncharacterized protein At5g01010) (Uncharacterized protein At5g01010/top_tel_10) 49399,55350,50433,54499 AT5G01010 protein (Retinal-binding protein),Retinal-binding protein,Retinal-binding protein (Uncharacterized protein At5g01010) (Uncharacterized protein At5g01010/top_tel_10) integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2185556; AT5G01010 NA Os05g0306000 protein (cDNA clone:J023093H10, full insert sequence) Q0DJA7 Q0DJA7_ORYSJ Os05g0306000 Os05g0306000 OSNPB_050306000 ENOG411DRRW PTB,PTB1,PTB2 Q9FGL9,Q9MAC5,Q8RWB0,Q0WQ48,A0A1P8BG61,A0A1P8BG29,A0A1P8BG46,A0A1I9LSX9,A0A1P8BG32,B3H7H5 PTBP2_ARATH,PTBP1_ARATH,Q8RWB0_ARATH,Q0WQ48_ARATH,A0A1P8BG61_ARATH,A0A1P8BG29_ARATH,A0A1P8BG46_ARATH,A0A1I9LSX9_ARATH,A0A1P8BG32_ARATH,B3H7H5_ARATH Polypyrimidine tract-binding protein homolog 2,Polypyrimidine tract-binding protein homolog 1,Polypyrimidine tract-binding protein 1 (Putative polypyrimidine tract-binding protein),Polypyrimidine tract-binding RNA transport protein-like (Polypyrimidine tract-binding protein 2),Polypyrimidine tract-binding protein 2,Polypyrimidine tract-binding protein 1 self-fertilization of this atptb1-1(+/-) atptb2-1(-/-) double mutant did not produce any double-homozygous progeny; in crosses of its pollen to wild type females no atptb1-1(+/-) atptb2-1(+/-) genotype was produced; pollen grains germinated less efficiently than those from wild type plants FUNCTION: Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA (By similarity). {ECO:0000250}. R-ATH-72163; 46884,43593,20529,35858,35931,32325,35114,34575,34233,29547 Polypyrimidine tract-binding protein homolog 2,Polypyrimidine tract-binding protein homolog 1,Polypyrimidine tract-binding protein 1 (Putative polypyrimidine tract-binding protein),Polypyrimidine tract-binding RNA transport protein-like (Polypyrimidine tract-binding protein 2),Polypyrimidine tract-binding protein 2,Polypyrimidine tract-binding protein 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380]; seed germination [GO:0009845],cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380]; seed germination [GO:0009845],nucleic acid binding [GO:0003676],RNA binding [GO:0003723] locus:2163746;,locus:2102142; AT5G53180,AT3G01150 polypyrimidine tract-binding protein Os03g0376900 protein (Polypyrimidine tract-binding protein, putative, expressed) (Putative polypyrimidine tract-binding protein) (cDNA clone:001-045-E01, full insert sequence),Os01g0619000 protein (Polypyrimidine tract-binding protein 1-like) (cDNA clone:001-044-B01, full insert sequence),Os08g0436000 protein (Putative polypyrimidine tract-binding protein homolog) (cDNA clone:J013107I22, full insert sequence),Os08g0436000 protein (Fragment),Os01g0619000 protein Q10KN8,Q5ZBG2,Q6YWJ5,A0A0P0XG96,A0A0P0V5C0 Q10KN8_ORYSJ,Q5ZBG2_ORYSJ,Q6YWJ5_ORYSJ,A0A0P0XG96_ORYSJ,A0A0P0V5C0_ORYSJ Os03g0376900 LOC_Os03g25980 Os03g0376900 OsJ_11035 OSJNBb0048D20.1 OSNPB_030376900,B1040D09.15-1 Os01g0619000 OsJ_02633 OSNPB_010619000,Os08g0436000 OsJ_27445 OSNPB_080436000 P0413H11.37,Os08g0436000 OSNPB_080436000,Os01g0619000 OSNPB_010619000 ENOG411DRRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA circadian clock coupling factor ZGT Os05g0494600 protein (Putative circadian clock coupling factor ZGT) (cDNA clone:002-139-G09, full insert sequence) Q65X77 Q65X77_ORYSJ Os05g0494600 Os05g0494600 OJ1579_G03.5 OSNPB_050494600 ENOG411DRRY ANT,BBM,PLT1,PLT2 Q38914,Q6PQQ4,Q5YGP8,Q5YGP7,A0A1R7T398 ANT_ARATH,BBM_ARATH,PLET1_ARATH,PLET2_ARATH,A0A1R7T398_ARATH AP2-like ethylene-responsive transcription factor ANT (Complementing a protein kinase C mutant protein 1) (Protein AINTEGUMENTA) (Protein DRAGON) (Protein OVULE MUTANT),AP2-like ethylene-responsive transcription factor BBM (AtBBM) (Protein AINTEGUMENTA-LIKE 2) (Protein BABY BOOM),AP2-like ethylene-responsive transcription factor PLT1 (Protein AINTEGUMENTA-LIKE 3) (Protein PLETHORA 1),AP2-like ethylene-responsive transcription factor PLT2 (Protein AINTEGUMENTA-LIKE 4) (Protein PLETHORA 2),Integrase-type DNA-binding superfamily protein Double mutants had an increased number of sepals compared with either single mutant. In early arising flowers as many as eight sepals were present. In addition fusion between sepals was observed in ant-4 rbe-3 mutants. Sepals in the double mutant were often fused along their entire length rather than just at their base as usually seen in rbe-3.,Mutant flowers also show a reduction in the overall number of second-whorl organs. In addition fewer filaments and staminoid organs were present in the double mutant compared with rbe-3 single mutants. Reduced stamen number in the third whorl of ant-4 mutants was partially rescued by rbe-3.,The mutation causes extra cells in the columella root cap and the QC.,Rootless.Embryonic root differentiates 3 days after germination. Adventitious roots arrest 6 days after germination. Abnormal flower and ovule development-R. Fischer-1996,Slightly slower root growth; Increased cell number in columella root cap and quiescent center-B. Scheres-2004,Slightly slower root growth; Increased columella cell density; Slightly reduced root meristem cell number-B. Scheres-2004 FUNCTION: Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.,FUNCTION: Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.,FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. MISCELLANEOUS: Was named 'Baby boom' because overexpressing transgenic plants exhibit several spontaneous somatic embryos. 61725,64545,62875,62233,57922 AP2-like ethylene-responsive transcription factor ANT (Complementing a protein kinase C mutant protein 1) (Protein AINTEGUMENTA) (Protein DRAGON) (Protein OVULE MUTANT),AP2-like ethylene-responsive transcription factor BBM (AtBBM) (Protein AINTEGUMENTA-LIKE 2) (Protein BABY BOOM),AP2-like ethylene-responsive transcription factor PLT1 (Protein AINTEGUMENTA-LIKE 3) (Protein PLETHORA 1),AP2-like ethylene-responsive transcription factor PLT2 (Protein AINTEGUMENTA-LIKE 4) (Protein PLETHORA 2),Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; glucosinolate metabolic process [GO:0019760]; maintenance of shoot apical meristem identity [GO:0010492]; regulation of cell proliferation [GO:0042127]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; ethylene-activated signaling pathway [GO:0009873]; pattern specification process [GO:0007389]; root development [GO:0048364]; root meristem growth [GO:0010449]; stem cell population maintenance [GO:0019827]; telomere maintenance [GO:0000723]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; ethylene-activated signaling pathway [GO:0009873]; meristem maintenance [GO:0010073]; pattern specification process [GO:0007389]; root development [GO:0048364]; root meristem growth [GO:0010449]; stem cell population maintenance [GO:0019827]; telomere maintenance [GO:0000723]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in floral primordia, in STM-negative region, then in sepal primordia. As sepal develops, progressively confined to a basal core before disappearing. Present in stamen primordia, then confined to a central region as they become stalked and develop locules. Later reduced to procambial cells as stamen mature. From petal primordia, expressed on the lateral edges of developing petals and finally confined to petal epidermis before disappearing. Present in carpel primordia, then in inner side of carpels especially in the placenta. Strong levels in ovules primordia and young ovules, then localized in integuments initiation zone before being confined to inner integument cells that will differentiate into the endothelium. Expressed in the distal half of the funiculus throughout ovule development and later extends into the chalaza. After fertilization, expression shift to the embryo. First on the apical part at the globular stage, then in cotyledons primordia, and later in cotyledons during the torpedo stage. As cotyledons grow out, expression becomes limited to a plane separating adaxial and abaxial parts. Excluded from the embryonic central region (ECR). In seedlings, found in leaf primordia then in central and lateral actively developing regions of extending leaves. {ECO:0000269|PubMed:10656774, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9671577}.,DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.,DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. TISSUE SPECIFICITY: Mostly expressed in developing flowers. Also present in mature flowers, siliques and seedlings, but not in mature roots, leaves and stems. Expressed in ovules and in vegetative and floral primordia. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707}.,TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also expressed in roots, seedlings, and siliques, and, at low levels, in leaves. {ECO:0000269|PubMed:12172019, ECO:0000269|PubMed:15988559}.,TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. locus:2137559;,locus:2178915;,locus:2091891;,locus:2008216; AT4G37750,AT5G17430,AT3G20840,AT1G51190 Transcription factor Os03g0176300 protein (Transcription factor AP2D14) (Fragment),AP2/EREBP transcription factor-like protein (Os02g0614300 protein),ANT, putative, expressed (Os03g0232200 protein) (cDNA clone:002-101-C10, full insert sequence),Os03g0770700 protein,Os04g0504500 protein,Os01g0899800 protein Q2TQ36,Q6K5Y1,Q10PJ5,A0A0P0W3S9,A0A0P0WCI6,A0A0P0VBN0 Q2TQ36_ORYSJ,Q6K5Y1_ORYSJ,Q10PJ5_ORYSJ,A0A0P0W3S9_ORYSJ,A0A0P0WCI6_ORYSJ,A0A0P0VBN0_ORYSJ AP2D14 Os03g0176300 OSNPB_030176300,Os02g0614300 OJ2055_H10.24 OSNPB_020614300 P0407A09.3,LOC_Os03g12950 Os03g0232200 OSNPB_030232200,Os03g0770700 OSNPB_030770700,Os04g0504500 OSNPB_040504500,Os01g0899800 OSNPB_010899800 ENOG411DRRZ B3DNN7,A0A1P8AP87,A0A1P8AP99 B3DNN7_ARATH,A0A1P8AP87_ARATH,A0A1P8AP99_ARATH At1g16650 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 57609,42020,58565 At1g16650 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2017928; AT1G16650 Inherit from KOG: Ribosomal RNA adenine dimethylase domain containing 1 Expressed protein (Os12g0610500 protein) Q2QMB6 Q2QMB6_ORYSJ LOC_Os12g41670 Os12g0610500 OSNPB_120610500 ENOG411E7C2 Q1EBT3,F4JMJ6,Q8GXP2 Q1EBT3_ARATH,F4JMJ6_ARATH,Q8GXP2_ARATH At4g16695 (Transmembrane protein),Transmembrane protein 5897,6448,6465 At4g16695 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] locus:1005716316; AT4G16695 NA Os03g0102000 protein B9FA98 B9FA98_ORYSJ Os03g0102000 OsJ_09061 OSNPB_030102000 ENOG411E7C4 Q1PET7 Q1PET7_ARATH Pinin-like protein 40036 Pinin-like protein locus:505006325; AT3G02125 NA NA NA NA NA NA NA NA ENOG411E7C6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E7C9 O22825,A0A1P8AZ61 O22825_ARATH,A0A1P8AZ61_ARATH At2g43780/F18O19.11 (Cytochrome oxidase assembly protein) (Uncharacterized protein At2g43780),Cytochrome oxidase assembly protein 7138,10283 At2g43780/F18O19.11 (Cytochrome oxidase assembly protein) (Uncharacterized protein At2g43780),Cytochrome oxidase assembly protein integral component of membrane [GO:0016021]; mitochondrion [GO:0005739],integral component of membrane [GO:0016021] locus:2043914; AT2G43780 NA Os05g0103800 protein (Fragment),Os12g0611700 protein (Fragment) A0A0P0WGT8,A0A0N7KUC6 A0A0P0WGT8_ORYSJ,A0A0N7KUC6_ORYSJ Os05g0103800 OSNPB_050103800,Os12g0611700 OSNPB_120611700 ENOG411E7C8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) Os10g0328900 protein (Putative rapid alkalinization factor protein) (Rapid ALkalinization Factor family protein) Q7G716 Q7G716_ORYSJ OSJNBa0073L20.23 Os10g0328900 LOC_Os10g18170 OSJNBb0008A05.5 OSNPB_100328900 ENOG411E7CQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cAMP-regulated phosphoprotein/endosulfine conserved region NA NA NA NA NA NA NA ENOG411E7CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0183600 protein Q6H886 Q6H886_ORYSJ Os02g0183600 OJ1572_F02.6 OsJ_05646 OSNPB_020183600 ENOG411E7CS Q1EBS5,Q9XI42 Q1EBS5_ARATH,Q9XI42_ARATH At3g16040 (Translation machinery associated TMA7),F9L1.21 protein (Translation machinery associated TMA7) (Uncharacterized protein At1g15270) (Uncharacterized protein At1g15270; F9L1.21) 7107,6978 At3g16040 (Translation machinery associated TMA7),F9L1.21 protein (Translation machinery associated TMA7) (Uncharacterized protein At1g15270) (Uncharacterized protein At1g15270; F9L1.21) plasma membrane [GO:0005886] locus:2093412;,locus:2037768; AT3G16040,AT1G15270 Coiled-coil domain-containing protein NA NA NA NA NA NA NA ENOG411E7CR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20 alpha crystallin family protein expressed Hsp20/alpha crystallin family protein, expressed (Os10g0437700 protein) (cDNA clone:001-107-A06, full insert sequence),Os03g0157600 protein Q109M7,A0A0P0VTB1 Q109M7_ORYSJ,A0A0P0VTB1_ORYSJ Os10g0437700 LOC_Os10g30162 Os10g0437700 OsJ_31645 OSNPB_100437700,Os03g0157600 OSNPB_030157600 ENOG411E7CT EML1 Q9C7C4 EML1_ARATH Protein EMSY-LIKE 1 (AtEML1) DISRUPTION PHENOTYPE: Reduced resistance to Hyaloperonospora arabidopsidis isolate Hiks1. Slight early flowering phenotype. {ECO:0000269|PubMed:21830950}. FUNCTION: Probably involved in the regulation of chromatin states (Probable). Contributes to RPP7-mediated and basal immunity, especially against Hyaloperonospora arabidopsidis isolate Hiks1. Regulates negatively EDM2-dependent floral transition (PubMed:21830950). {ECO:0000269|PubMed:21830950, ECO:0000305|PubMed:21830950}. 36912 Protein EMSY-LIKE 1 (AtEML1) nucleus [GO:0005634]; defense response to fungus [GO:0050832]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2099287; AT3G12140 ENT domain NA NA NA NA NA NA NA ENOG411E7CV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated NA NA NA NA NA NA NA ENOG411E7CX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0491884 protein A0A0P0XPZ3 A0A0P0XPZ3_ORYSJ Os09g0491884 OSNPB_090491884 ENOG411E7CZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0633900 protein Q8L4U3 Q8L4U3_ORYSJ P0455H11.108 Os07g0633900 P0519E12.138 OSNPB_070633900 ENOG411E7CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7CB A0A1R7T3I3,F4KCN7 A0A1R7T3I3_ARATH,F4KCN7_ARATH RWP-RK domain protein 49917,39592 RWP-RK domain protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2181367; AT5G16100 RWP-RK domain NA NA NA NA NA NA NA ENOG411E7CD O82271,A0A1P8B0Q1 O82271_ARATH,A0A1P8B0Q1_ARATH At2g31130/T16B12.6 (Expressed protein),Uncharacterized protein 47373,39315 At2g31130/T16B12.6 (Expressed protein),Uncharacterized protein locus:2055866; AT2G31130 NA NA NA NA NA NA NA NA ENOG411E7CH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0734200 protein) (cDNA clone:J033115G14, full insert sequence) Q10DC1 Q10DC1_ORYSJ Os03g0734200 LOC_Os03g52380 Os03g0734200 OsJ_12472 OSNPB_030734200 ENOG411E7CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-arabinono-14-lactone oxidase NA NA NA NA NA NA NA ENOG411EJG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ankyrin Repeat Protein NA NA NA NA NA NA NA ENOG411E009 Q9LI86 Q9LI86_ARATH At3g25590 (Micronuclear linker histone polyprotein-like protein) (Uncharacterized protein At3g25590) 47807 At3g25590 (Micronuclear linker histone polyprotein-like protein) (Uncharacterized protein At3g25590) locus:2102365; AT3G25590 NA NA NA NA NA NA NA NA ENOG411E00H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411E0WG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY BHLH transcription factor (Os05g0571200 protein) (cDNA clone:002-142-F03, full insert sequence) Q0DFT7 Q0DFT7_ORYSJ Os05g0571200 Os05g0571200 OsJ_19612 OSNPB_050571200 ENOG411EFHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFHX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1421) NA NA NA NA NA NA NA ENOG411E2QF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBM_2 NA NA NA NA NA NA NA ENOG411E1G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0329900 protein (Putative early nodule-specific protein ENOD8),Os01g0329900 protein (Fragment) Q5ZDS5,A0A0P0V1Y3 Q5ZDS5_ORYSJ,A0A0P0V1Y3_ORYSJ P0554D10.24-1 Os01g0329900 OSNPB_010329900,Os01g0329900 OSNPB_010329900 ENOG411E1G6 NUDT25 Q9C6Z2 NUD25_ARATH Nudix hydrolase 25 (AtNUDT25) (EC 3.6.1.17) (Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Mediates the hydrolysis of diadenosine 5',5''-P(1)P(4) tetraphosphate (Ap(4)A), a signaling molecule involved in regulation of DNA replication and repair. {ECO:0000269|PubMed:18345354}. ARA:AT1G30110-MONOMER; 3.6.1.17; 3.6.1.17 19829 Nudix hydrolase 25 (AtNUDT25) (EC 3.6.1.17) (Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)) bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity [GO:0004081]; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [GO:0008893]; metal ion binding [GO:0046872]; diadenosine tetraphosphate catabolic process [GO:0015967]; nucleoside phosphate metabolic process [GO:0006753] locus:2202487; AT1G30110 Nudix hydrolase NA NA NA NA NA NA NA ENOG411E1G5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Putative inorganic phosphate transporter 1-13 (OsPT13) (OsPht1;13) (H(+)/Pi cotransporter) Q7XRH8 PT113_ORYSJ PHT1-13 PT13 Os04g0186800 LOC_Os04g10800 OSJNBb0003A12.11 FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. ENOG411E1G3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0721800 protein,Fusarium resistance protein I2C-5-like (Os01g0721000 protein),NBS-LRR-like protein (Os01g0721300 protein),NBS-LRR-like protein (Os01g0721500 protein),Fusarium resistance protein I2C-5-like (Os01g0721400 protein),Os02g0612200 protein,Os02g0627900 protein,Os01g0721200 protein,Os01g0721100 protein Q0JJR7,Q8W0E0,Q5JMA9,Q5JMA8,Q8W0D5,Q6K632,B9F165,A0A0P0V7L9,A0A0P0V7I3 Q0JJR7_ORYSJ,Q8W0E0_ORYSJ,Q5JMA9_ORYSJ,Q5JMA8_ORYSJ,Q8W0D5_ORYSJ,Q6K632_ORYSJ,B9F165_ORYSJ,A0A0P0V7L9_ORYSJ,A0A0P0V7I3_ORYSJ Os01g0721800 Os01g0721800 OsJ_03293 OSNPB_010721800,Os01g0721000 OsJ_03287 OSNPB_010721000 P0690B02.13,Os01g0721300 OsJ_03290 OSNPB_010721300 P0690B02.17,Os01g0721500 OsJ_03292 OSNPB_010721500 P0690B02.20,Os01g0721400 OsJ_03291 OSNPB_010721400 P0690B02.18,Os02g0612200 OJ1004_A05.23 OsJ_07501 OSNPB_020612200,Os02g0627900 OsJ_07598 OSNPB_020627900,Os01g0721200 OSNPB_010721200,Os01g0721100 OSNPB_010721100 ENOG411E1GY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root cap NA NA NA NA NA NA NA ENOG411E1GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0028M18.1 protein (Os04g0161100 protein),Os04g0158400 protein (Fragment),Os04g0156200 protein (Fragment),Os04g0155200 protein Q7X8S6,A0A0P0W7C2,A0A0N7KIK0,A0A0N7KIJ9 Q7X8S6_ORYSJ,A0A0P0W7C2_ORYSJ,A0A0N7KIK0_ORYSJ,A0A0N7KIJ9_ORYSJ OSJNBb0028M18.1 Os04g0161100 OSNPB_040161100,Os04g0158400 OSNPB_040158400,Os04g0156200 OSNPB_040156200,Os04g0155200 OSNPB_040155200 ENOG411E1GW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os02g0668900 protein A0A0P0VMR3 A0A0P0VMR3_ORYSJ Os02g0668900 OSNPB_020668900 ENOG411E1GU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain 3-oxoacyl-reductase, chloroplast, putative, expressed (Os12g0242700 protein) (cDNA clone:002-156-A12, full insert sequence) Q2QV59 Q2QV59_ORYSJ LOC_Os12g13930 Os12g0242700 OsJ_35697 OSNPB_120242700 ENOG411E1GS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0711100 protein (cDNA clone:J023085C01, full insert sequence) Q5Z9F9 Q5Z9F9_ORYSJ Os06g0711100 OSNPB_060711100 P0655A07.33 ENOG411E1GR TPR12 Q9C9S0,A0A1P8AVA2 Q9C9S0_ARATH,A0A1P8AVA2_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T11I11.6),Tetratricopeptide repeat (TPR)-like superfamily protein 59620,53832 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T11I11.6),Tetratricopeptide repeat (TPR)-like superfamily protein mitochondrion [GO:0005739] locus:2194739; AT1G78120 TPR NA NA NA NA NA NA NA ENOG411E1GQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalyzes the oxidation of cytokinins a family of N(6)- substituted adenine derivatives that are plant hormones where the substituent is an isopentenyl group (By similarity) Cytokinin dehydrogenase 8 (EC 1.5.99.12) (Cytokinin oxidase 8) (OsCKX8) A3AVP1 CKX8_ORYSJ CKX8 Os04g0523500 LOC_Os04g44230 OsJ_15507 OSJNBb0065J09.8 FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000250}. ENOG411E1GP MRB17.4 Q9FIV0 Q9FIV0_ARATH AT5g54540/MRB17_4 (Uncharacterized conserved protein (UCP012943)) 31866 AT5g54540/MRB17_4 (Uncharacterized conserved protein (UCP012943)) locus:2172104; AT5G54540 NA Os08g0179900 protein Q6Z9U8 Q6Z9U8_ORYSJ Os08g0179900 OSNPB_080179900 P0455A11.10 ENOG411E1GH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA polymerases I II and III subunit Os12g0139500 protein,Os11g0143400 protein Q0IQ77,A0A0P0XYM3 Q0IQ77_ORYSJ,A0A0P0XYM3_ORYSJ Os12g0139500 Os12g0139500 OsJ_35178 OSNPB_120139500,Os11g0143400 OSNPB_110143400 ENOG411E1GF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase At1g67000-like NA NA NA NA NA NA NA ENOG411E1GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0188500 protein A0A0P0Y7W9 A0A0P0Y7W9_ORYSJ Os12g0188500 OSNPB_120188500 ENOG411E1GB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein 12-like NA NA NA NA NA NA NA ENOG411E1GA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein Os09g0517800 protein,Os09g0479100 protein (Fragment),Os09g0479000 protein (Fragment) Q0J0B9,A0A0P0XPN5,A0A0P0XPG0 Q0J0B9_ORYSJ,A0A0P0XPN5_ORYSJ,A0A0P0XPG0_ORYSJ Os09g0517800 OSNPB_090517800,Os09g0479100 OSNPB_090479100,Os09g0479000 OSNPB_090479000 ENOG411E2WQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os04g0572200 protein B9FC28 B9FC28_ORYSJ Os04g0572200 OsJ_15841 OSNPB_040572200 ENOG411E2WR AMC2 Q7XJE5 MCA2_ARATH Metacaspase-2 (AtMC2) (EC 3.4.22.-) (Metacaspase 1c) (AtMCP1c) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but enhancement of hypersensitive cell death response upon infection with avirulent pathogen. {ECO:0000269|PubMed:21097903}. FUNCTION: Acts as a negative regulator of oxidative stress cell death and hypersensitive cell death response mediated by immune response. Acts via indirect or direct regulation of AMC1 at postranscriptional level. {ECO:0000269|PubMed:21097903}. 3.4.22.- 45811 Metacaspase-2 (AtMC2) (EC 3.4.22.-) (Metacaspase 1c) (AtMCP1c) cysteine-type peptidase activity [GO:0008234]; defense response [GO:0006952]; negative regulation of programmed cell death [GO:0043069] locus:2117288; AT4G25110 Caspase domain NA NA NA NA NA NA NA ENOG411E2WS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os05g0148900 protein (Putative glutathione-S-transferase) Q65XF1 Q65XF1_ORYSJ Os05g0148900 OJ1504_G04.2 OSNPB_050148900 ENOG411E2WT MNL12.3 Q9FHS4 Q9FHS4_ARATH Emb|CAB76036.1 (Excinuclease ABC, C subunit, N-terminal) 19353 Emb|CAB76036.1 (Excinuclease ABC, C subunit, N-terminal) locus:2169273; AT5G43210 structure-specific endonuclease subunit Os12g0143300 protein,Os11g0146550 protein Q0IQ60,A0A0P0XYY7 Q0IQ60_ORYSJ,A0A0P0XYY7_ORYSJ Os12g0143300 Os12g0143300 OSNPB_120143300,Os11g0146550 OSNPB_110146550 ENOG411E2WU VHA-F Q9ZQX4 VATF_ARATH V-type proton ATPase subunit F (V-ATPase subunit F) (V-ATPase 14 kDa subunit) (Vacuolar H(+)-ATPase subunit F) (Vacuolar proton pump subunit F) FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By similarity). {ECO:0000250}. R-ATH-1222556;R-ATH-77387;R-ATH-917977; 14259 V-type proton ATPase subunit F (V-ATPase subunit F) (V-ATPase 14 kDa subunit) (Vacuolar H(+)-ATPase subunit F) (Vacuolar proton pump subunit F) Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; proton-transporting V-type ATPase, V1 domain [GO:0033180]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATPase coupled ion transmembrane transporter activity [GO:0042625]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991] locus:2132343; AT4G02620 Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By similarity) V-type proton ATPase subunit F Q6KAA4 Q6KAA4_ORYSJ Os04g0137500 Os02g0824700 OJ1063_D06.15 OsJ_08944 OsJ_13663 OSNPB_020824700 OSNPB_040137500 FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. {ECO:0000256|PIRNR:PIRNR015945}. ENOG411E2WV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0507400 protein) Q2QQ46 Q2QQ46_ORYSJ LOC_Os12g32260 Os12g0507400 OSNPB_120507400 ENOG411E2WW DOF1.4 Q9FZA4,Q2V4K7 DOF14_ARATH,Q2V4K7_ARATH Dof zinc finger protein DOF1.4 (AtDOF1.4),Dof-type zinc finger DNA-binding family protein FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 34021,36611 Dof zinc finger protein DOF1.4 (AtDOF1.4),Dof-type zinc finger DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2032153; AT1G28310 dof zinc finger protein NA NA NA NA NA NA NA ENOG411E2WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0345500 protein Q6EQG6 Q6EQG6_ORYSJ Os09g0345500 Os09g0345500 OsJ_28984 OSJNBb0085I16.21 OSNPB_090345500 ENOG411E2WD OEP21B,OEP21A Q9FPG2,Q6ID99 OP21B_ARATH,OP21A_ARATH Outer envelope pore protein 21B, chloroplastic (Chloroplastic outer envelope pore protein of 21 kDa B),Outer envelope pore protein 21A, chloroplastic (Chloroplastic outer envelope pore protein of 21 kDa A) FUNCTION: Voltage-dependent rectifying anion channel that facilitates the translocation between chloroplast and cytoplasm of phosphorylated carbohydrates such as triosephosphate, 3-phosphoglycerate and inorganic phosphate (Pi) depending of ATP to triosephosphate ratio in the plastidial intermembrane space; in high triosephosphate/ATP conditions (e.g. photosynthesis), export of triosphophate from chloroplast (outward rectifying channels), but in high ATP/triosephosphate conditions (e.g. dark phase), import of phosphosolutes (inward rectifying channels) (By similarity). {ECO:0000250}. 19452,19782 Outer envelope pore protein 21B, chloroplastic (Chloroplastic outer envelope pore protein of 21 kDa B),Outer envelope pore protein 21A, chloroplastic (Chloroplastic outer envelope pore protein of 21 kDa A) chloroplast envelope [GO:0009941]; etioplast membrane [GO:0034426]; integral component of chloroplast outer membrane [GO:0031359]; pore complex [GO:0046930]; porin activity [GO:0015288]; voltage-gated anion channel activity [GO:0008308]; regulation of anion transport [GO:0044070],etioplast membrane [GO:0034426]; integral component of chloroplast outer membrane [GO:0031359]; pore complex [GO:0046930]; porin activity [GO:0015288]; voltage-gated anion channel activity [GO:0008308]; regulation of anion transport [GO:0044070] locus:505006225;,locus:2825702; AT1G76405,AT1G20816 Voltage-dependent rectifying anion channel that facilitates the translocation between chloroplast and cytoplasm of phosphorylated carbohydrates such as triosephosphate 3- phosphoglycerate and inorganic phosphate (Pi) depending of ATP to triosephosphate ratio in the plastidial intermembrane space Outer envelope pore protein 21, chloroplastic (Chloroplastic outer envelope pore protein of 21 kDa) Q6K965 OEP21_ORYSJ OEP21 Os02g0832200 LOC_Os02g58550 OJ1149_C12.21 OsJ_09004 FUNCTION: Voltage-dependent rectifying anion channel that facilitates the translocation between chloroplast and cytoplasm of phosphorylated carbohydrates such as triosephosphate, 3-phosphoglycerate and inorganic phosphate (Pi) depending of ATP to triosephosphate ratio in the plastidial intermembrane space; in high triosephosphate/ATP conditions (e.g. photosynthesis), export of triosphophate from chloroplast (outward rectifying channels), but in high ATP/triosephosphate conditions (e.g. dark phase), import of phosphosolutes (inward rectifying channels) (By similarity). {ECO:0000250}. ENOG411E2WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family OSJNBb0052B05.16 protein (Os04g0259100 protein),Acetyltransferase, GNAT family protein, expressed (Os03g0664800 protein) (Putative acetyltransferase) (cDNA, clone: J100023K20, full insert sequence) Q7X7Y7,Q75GC2 Q7X7Y7_ORYSJ,Q75GC2_ORYSJ OSJNBb0052B05.16 Os04g0259100 OSNPB_040259100,OSJNBb0031A14.3 LOC_Os03g46200 Os03g0664800 OsJ_12001 OSJNBa0034D21.2 OSNPB_030664800 ENOG411E2WF MYB11,MYB12 Q9LZK4,O22264 MYB11_ARATH,MYB12_ARATH Transcription factor MYB11 (Myb-related protein 11) (AtMYB11) (Protein PRODUCTION OF FLAVONOL GLYCOSIDES 2),Transcription factor MYB12 (Myb-related protein 12) (AtMYB12) (Protein PRODUCTION OF FLAVONOL GLYCOSIDES 1) DISRUPTION PHENOTYPE: Accelerated germination, faster hypocotyl and primary root elongation, more lateral and adventitious roots formation, faster development of the inflorescence, and more lateral inflorescences initiation and fruits (PubMed:18359753). The double mutant myb11 myb111 and triple mutant myb11 myb12 myb111 accumulate less flavonols in roots, leaves, stems, inflorescence, and siliques. The double mutant myb11 myb12 is specifically altered in flavonols content of siliques (PubMed:20731781). The triple mutant myb11 myb12 myb111 is impaired in flavonols biosynthesis and exhibits a reduced UV-B tolerance (PubMed:17419845, PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:18359753, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.,DISRUPTION PHENOTYPE: Reduced flavonols levels in roots. The double mutant myb12 myb111 and triple mutant myb11 myb12 myb111 accumulate less flavonols in roots, leaves, stems, inflorescence, and siliques. The double mutant myb11 myb12 is specifically altered in flavonols content of siliques and roots (PubMed:20731781). The triple mutant myb11 myb12 myb111 is impaired in flavonols biosynthesis and exhibits a reduced UV-B tolerance (PubMed:17419845, PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. Low flavonoid levels-B. Weisshaar-2005 FUNCTION: Modulates overall growth by reducing the proliferation activity of meristematic cells and delaying development (PubMed:18359753). Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1 (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:18359753, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.,FUNCTION: Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. 38314,41394 Transcription factor MYB11 (Myb-related protein 11) (AtMYB11) (Protein PRODUCTION OF FLAVONOL GLYCOSIDES 2),Transcription factor MYB12 (Myb-related protein 12) (AtMYB12) (Protein PRODUCTION OF FLAVONOL GLYCOSIDES 1) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; flavonol biosynthetic process [GO:0051555]; multicellular organism development [GO:0007275]; negative regulation of cell proliferation [GO:0008285]; negative regulation of developmental growth [GO:0048640]; positive regulation of flavonol biosynthetic process [GO:1900386]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to light stimulus [GO:0009416]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; flavonoid biosynthetic process [GO:0009813]; flavonol biosynthetic process [GO:0051555]; positive regulation of flavonol biosynthetic process [GO:1900386]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to light stimulus [GO:0009416]; response to salt stress [GO:0009651]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in root and shoot meristems and also in young still meristematic leaf and flower primordia (PubMed:18359753). In seedlings, accumulates ubiquitously at low levels. Expressed in shoot apical meristem (SAM), primary leaves, apex of cotyledons, and at the hypocotyl-root transition. In roots, present at the origin of lateral roots and the root tip, as well as in the vascular tissue of lateral roots (PubMed:17419845). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:18359753}.,DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in roots. Expressed predominantly in the root, in the vascular tissue of the hypocotyl-root transition zone and, at low levels, at the region of apical meristem and the apex of cotyledons. {ECO:0000269|PubMed:17419845}. TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and apical meristems. {ECO:0000269|PubMed:17419845}.,TISSUE SPECIFICITY: Expressed in stems and flower buds (PubMed:9839469). Expressed in seedlings, roots, cotyledons and apical meristems (PubMed:17419845). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:9839469}. locus:2081735;,locus:2062040; AT3G62610,AT2G47460 Transcription factor NA NA NA NA NA NA NA ENOG411E2WH H2B O23629,Q9SI96,Q9ZUS0,Q9SF55,Q9LZT0,Q9LZ45,Q9FFC0,P40283,Q9LQQ4 H2B6_ARATH,H2B3_ARATH,H2B4_ARATH,H2B5_ARATH,H2B7_ARATH,H2B9_ARATH,H2B10_ARATH,H2B11_ARATH,H2B1_ARATH Histone H2B.6 (H2BAt) (HTB9),Histone H2B.3 (HTB3),Histone H2B.4 (HTB5),Histone H2B.5 (HTB7),Histone H2B.7 (HTB11),Histone H2B.9 (HTB10),Histone H2B.10 (HTB2),Histone H2B.11 (HTB4),Histone H2B.1 (HTB1) FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. R-ATH-212300;R-ATH-2299718;R-ATH-2559580;R-ATH-2559582;R-ATH-5578749;R-ATH-5689880;R-ATH-5693565; 16436,16529,15082,13967,15912,14544,15732,16449,16402 Histone H2B.6 (H2BAt) (HTB9),Histone H2B.3 (HTB3),Histone H2B.4 (HTB5),Histone H2B.5 (HTB7),Histone H2B.7 (HTB11),Histone H2B.9 (HTB10),Histone H2B.10 (HTB2),Histone H2B.11 (HTB4),Histone H2B.1 (HTB1) chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982],nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982],nucleosome [GO:0000786]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982],nucleolus [GO:0005730]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982],nucleolus [GO:0005730]; nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982],chloroplast [GO:0009507]; nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982] DEVELOPMENTAL STAGE: Strong up-regulation during the S-phase. {ECO:0000269|PubMed:9414552}. locus:2077182;,locus:2054553;,locus:2049857;,locus:2074959;,locus:2077152;,locus:2181823;,locus:2172691;,locus:2168093;,locus:2026494; AT3G45980,AT2G28720,AT2G37470,AT3G09480,AT3G46030,AT5G02570,AT5G22880,AT5G59910,AT1G07790 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling Histone H2B.11,Histone H2B.1,Histone H2B.2,Histone H2B.7,Histone H2B.8,Histone H2B.3,Histone H2B.4,Histone H2B.6,Histone H2B.10,Histone H2B.9,Histone H2B,Histone H2B (Fragment) Q943L2,A3AGM4,Q6ZBP3,Q7GBK0,Q9LGH8,Q94JJ7,Q94JJ4,Q9LGH4,Q9LGI2,Q6F362,B9G1J0,Q0JQL7,A0A0P0WN72,A0A0P0XHD8 H2B11_ORYSJ,H2B1_ORYSJ,H2B2_ORYSJ,H2B7_ORYSJ,H2B8_ORYSJ,H2B3_ORYSJ,H2B4_ORYSJ,H2B6_ORYSJ,H2B10_ORYSJ,H2B9_ORYSJ,B9G1J0_ORYSJ,Q0JQL7_ORYSJ,A0A0P0WN72_ORYSJ,A0A0P0XHD8_ORYSJ H2B.11 Os01g0839500 LOC_Os01g62230 OsJ_003922 P0031D11.32 P0408C03.7,H2B1 Os03g0279000 LOC_Os03g17084 OsJ_009946,H2B.2 Os08g0490900 LOC_Os08g38300 OsJ_026648 P0605H02.39,H2B.7 OsH2B Os01g0152900 LOC_Os01g05970 P0009G03.37 P0030H07.16,H2B.8 Os01g0152700 LOC_Os01g05950 OsJ_000402 P0009G03.35 P0030H07.14,H2B.3 Os01g0149400 LOC_Os01g05610 OsJ_000370 P0434B04.27,H2B.4 Os01g0149600 LOC_Os01g05630 OsJ_000372 P0434B04.31,H2B.6 Os01g0153100 LOC_Os01g05970 OsJ_000406 P0009G03.42,H2B.10 Os01g0152300 LOC_Os01g05900 OsJ_000397 P0009G03.29 P0030H07.8,H2B.9 Os05g0574300 LOC_Os05g49860 OJ1268_B08.6 OJ1735_C10.24 OsJ_018845 OsJ_19633,Os08g0490800 OsJ_27756 OSNPB_080490800,Os01g0152700 Os01g0152700 OSNPB_010152700,Os05g0460475 OSNPB_050460475,Os08g0490900 OSNPB_080490900 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. ENOG411E2WI A0A1I9LQG9,F4J303 A0A1I9LQG9_ARATH,F4J303_ARATH Uncharacterized protein 20861,19691 Uncharacterized protein locus:2091306; AT3G29280 NA Os03g0209700 protein,Os03g0257000 protein (Fragment) A3AFC5,A0A0P0VVV6 A3AFC5_ORYSJ,A0A0P0VVV6_ORYSJ Os03g0209700 OsJ_09867 OSNPB_030209700,Os03g0257000 OSNPB_030257000 ENOG411E2WJ BTF3 Q9CAT7,Q9SMW7 BTF3L_ARATH,BTF3_ARATH Nascent polypeptide-associated complex subunit beta,Basic transcription factor 3 (AtBTF3) (Nascent polypeptide-associated complex subunit beta) 18004,17946 Nascent polypeptide-associated complex subunit beta,Basic transcription factor 3 (AtBTF3) (Nascent polypeptide-associated complex subunit beta) regulation of transcription, DNA-templated [GO:0006355]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:2197239;,locus:2030963; AT1G73230,AT1G17880 Transcription factor Nascent polypeptide-associated complex subunit beta,Os03g0850500 protein,Nascent polypeptide-associated complex subunit beta (Fragment),Os03g0109650 protein (Fragment) Q84VF8,Q851Y9,Q851Z4,Q8LNW1,A0A0P0VS15,A0A0P0VSA9,A0A0P0VS13 Q84VF8_ORYSJ,Q851Y9_ORYSJ,Q851Z4_ORYSJ,Q8LNW1_ORYSJ,A0A0P0VS15_ORYSJ,A0A0P0VSA9_ORYSJ,A0A0P0VS13_ORYSJ Os03g0109600 LOC_Os03g01910 Os03g0109600 OSNPB_030109600,LOC_Os03g63400 Os03g0851000 OsJ_13386 OSJNBa0015N08.12 OSNPB_030851000,Os03g0850500 LOC_Os03g63350 OsJ_13380 OSJNBa0015N08.7 OSNPB_030850500,Os10g0483000 LOC_Os10g34180 Os10g0483000 Os10g34180 OSJNBa0012L23.32 OSNPB_100483000,Os03g0109600 OSNPB_030109600,Os03g0109650 OSNPB_030109650 ENOG411E2WK PAP85 Q9LUJ7 PAP85_ARATH Vicilin-like seed storage protein At3g22640 (Globulin At3g22640) DISRUPTION PHENOTYPE: (Microbial infection) Reduced tobacco mosaic virus (TMV) accumulation associated with altered endoplasmic reticulum (ER) transition in TMV-infected cells. {ECO:0000269|PubMed:23576511}. FUNCTION: Seed storage protein. {ECO:0000305}.; FUNCTION: (Microbial infection) Involved in tobacco mosaic virus (TMV) replication. Required for endoplasmic reticulum (ER) aggregations mediated by TMV main replicase (P126) upon viral infection. {ECO:0000269|PubMed:23576511}. 55063 Vicilin-like seed storage protein At3g22640 (Globulin At3g22640) plant-type cell wall [GO:0009505]; nutrient reservoir activity [GO:0045735]; response to cytokinin [GO:0009735]; response to virus [GO:0009615] DEVELOPMENTAL STAGE: First observed at 5 days post anthesis (DPA). Accumulates throughout subsequent stages of embryo development, in embryonic tissues such as cotyledons and embryo axis as well as in the endosperm. In young seedlings, strictly confined to the cotyledons, hypocotyl and root tip, 3-4 days after germination. Also detected in the trichomes of new leaves. {ECO:0000269|PubMed:19014699}. TISSUE SPECIFICITY: Predominantly expressed in the embryo and endosperm of developing seeds (PubMed:7827492, PubMed:19014699). Also present in seedlings (PubMed:19014699). {ECO:0000269|PubMed:19014699, ECO:0000269|PubMed:7827492}. locus:2094404; AT3G22640 Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling NA NA NA NA NA NA NA ENOG411E2W1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain SHAQKYF class family protein expressed Myb-like DNA-binding domain, SHAQKYF class family protein, expressed (Os12g0105600 protein),Os11g0106100 protein Q2QYV2,A0A0P0XY89 Q2QYV2_ORYSJ,A0A0P0XY89_ORYSJ Os12g0105600 LOC_Os12g01490 Os12g0105600 OsJ_34927 OSNPB_120105600,Os11g0106100 OSNPB_110106100 ENOG411E2W2 BCCP2 Q9LLC1 BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic (AtBCCP2) (BCCP-2) FUNCTION: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:GQT-2156-MONOMER; 27280 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic (AtBCCP2) (BCCP-2) acetyl-CoA carboxylase complex [GO:0009317]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; acetyl-CoA carboxylase activity [GO:0003989]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Primarily expressed in 7 to 10 days after flowering seeds at levels approximately 2-fold less abundant than BCCP1. {ECO:0000269|PubMed:11299381}. locus:2180927; AT5G15530 biotin carboxyl carrier protein NA NA NA NA NA NA NA ENOG411E2W3 A0A1I9LSC2,A0A1I9LSB9,F4JD88,A0A1I9LSC0 A0A1I9LSC2_ARATH,A0A1I9LSB9_ARATH,F4JD88_ARATH,A0A1I9LSC0_ARATH Alba DNA/RNA-binding protein 42979,43699,42501,49222 Alba DNA/RNA-binding protein nucleic acid binding [GO:0003676],cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2077547; AT3G07030 Alba Expressed protein (Os03g0735300 protein) (Putative macronuclear development protein) (cDNA clone:J023110G03, full insert sequence),Os03g0735300 protein (Fragment) Q6AVS5,A0A0N7KI03 Q6AVS5_ORYSJ,A0A0N7KI03_ORYSJ OSJNBa0027J18.5 LOC_Os03g52490 Os03g0735300 OSNPB_030735300,Os03g0735300 OSNPB_030735300 ENOG411E2W4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA finger protein NA NA NA NA NA NA NA ENOG411E2W5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain NAD dependent epimerase/dehydratase family protein, expressed (Os03g0404800 protein) (cDNA clone:J013032A17, full insert sequence) Q10JX4 Q10JX4_ORYSJ LOC_Os03g29150 Os03g0404800 OSNPB_030404800 ENOG411E2W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Os05g0311500 protein Q0DJ98 Q0DJ98_ORYSJ Os05g0311500 Os05g0311500 OsJ_18009 OSNPB_050311500 ENOG411E2W7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 NA NA NA NA NA NA NA ENOG411E2W8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0559316 protein A0A0P0WQQ1 A0A0P0WQQ1_ORYSJ Os05g0559316 OSNPB_050559316 ENOG411E2W9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3755) Os08g0100800 protein (cDNA clone:002-112-C11, full insert sequence) Q6Z1Z4 Q6Z1Z4_ORYSJ Os08g0100800 Os08g0100800 B1147B12.11 OSNPB_080100800 ENOG411E03J IBS1 F4ICB6,A0A1P8AP48,A0A1P8AQ94,F4HTW9,F4HTX0 IBS1_ARATH,A0A1P8AP48_ARATH,A0A1P8AQ94_ARATH,F4HTW9_ARATH,F4HTX0_ARATH Protein IMPAIRED IN BABA-INDUCED STERILITY 1 (EC 2.7.11.-),Protein kinase superfamily protein DISRUPTION PHENOTYPE: Impaired in beta-aminobutyric acid (BABA)-induced sterility. Altered BABA-induced resistance (BABA-IR) against bacteria (e.g. P.syringae) and oomycetes (e.g. H.parasitica) associated with reduction in priming for salicylate (SA)-dependent defense responses (e.g. trailing necrosis and pathogenesis-related PR-1 gene expression) (PubMed:15722464, PubMed:22209872). Reduced primed to be primed phenotype in transgenerationally primed plants exposed to a second BABA-priming (PubMed:22209872). {ECO:0000269|PubMed:15722464, ECO:0000269|PubMed:22209872}. FUNCTION: Required for beta-aminobutyric acid (BABA)-induced resistance (BABA-IR) against bacteria (e.g. P.syringae) and oomycetes (e.g. H.parasitica) via priming for salicylate (SA)-dependent defense responses such as pathogenesis-related PR-1 gene expression and trailing necrosis. Involved in BABA-mediated sterility (PubMed:15722464, PubMed:22209872). Necessary for the inheritance of BABA-priming to next generation, especially for the primed to be primed phenotype which consists in an enhanced second BABA-priming in transgenerationally primed plants (PubMed:22209872). {ECO:0000269|PubMed:15722464, ECO:0000269|PubMed:22209872}. R-ATH-674695;R-ATH-6796648; 2.7.11.- 79535,72490,80996,77661,78735 Protein IMPAIRED IN BABA-INDUCED STERILITY 1 (EC 2.7.11.-),Protein kinase superfamily protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of defense response to oomycetes [GO:1902290]; protein phosphorylation [GO:0006468]; regulation of salicylic acid mediated signaling pathway [GO:2000031],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468] locus:2034944;,locus:2019115; AT1G18670,AT1G74330 serine threonine-protein kinase Os07g0596600 protein (Putative cyclin-dependent kinase CDC2C),Os07g0596600 protein (Fragment) Q7XIB4,A0A0P0X952,A0A0P0X8W2 Q7XIB4_ORYSJ,A0A0P0X952_ORYSJ,A0A0P0X8W2_ORYSJ P0453E05.113 Os07g0596600 OSNPB_070596600,Os07g0596600 OSNPB_070596600 ENOG411E03K GLP1,GER3 P94040,P94072 GL31_ARATH,GL33_ARATH Germin-like protein subfamily 3 member 1 (At-GERM1) (AtGER1) (AtGLP1),Germin-like protein subfamily 3 member 3 (AtGER3) (AtGLP2) FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. MISCELLANEOUS: Is the most highly expressed of the GLP genes. 21559,21836 Germin-like protein subfamily 3 member 1 (At-GERM1) (AtGER1) (AtGLP1),Germin-like protein subfamily 3 member 3 (AtGER3) (AtGLP2) apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular matrix [GO:0031012]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735],apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular matrix [GO:0031012]; nucleus [GO:0005634]; plant-type cell wall [GO:0009505]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; response to cold [GO:0009409]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Expressed during germination, and also in green shoots, etiolated seedlings and whole seedlings.,TISSUE SPECIFICITY: Expressed in leaves and flowers. locus:2030205;,locus:2180444; AT1G72610,AT5G20630 germin-like protein Germin-like protein 8-14 (Germin-like protein 1) (Germin-like protein 5) (OsGER5) Q6ZBZ2 GL814_ORYSJ GER5 GLP1 GLP110 Os08g0460000 LOC_Os08g35760 OsJ_026469 P0493A04.40 P0690E03.8 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E03H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A26 (Alpha-expansin-26) (OsEXP26) (OsEXPA26) (OsaEXPa1.29) Q2QP13 EXP26_ORYSJ EXPA26 EXP26 Os12g0546800 LOC_Os12g36040 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E03I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os02g0564700 protein (Putative bHLH transcription factor PTF1) (cDNA, clone: J075076G04, full insert sequence) Q6Z7E7 Q6Z7E7_ORYSJ Os02g0564700 OsJ_07173 OSNPB_020564700 P0020C11.18 ENOG411E03N PCMP-H56 Q9LUJ2,A0A1I9LQP2,F4J1L5 PP249_ARATH,A0A1I9LQP2_ARATH,F4J1L5_ARATH Pentatricopeptide repeat-containing protein At3g22690,LOW protein: PPR containing-like protein 93462,90014,104219 Pentatricopeptide repeat-containing protein At3g22690,LOW protein: PPR containing-like protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451],zinc ion binding [GO:0008270],chloroplast [GO:0009507]; zinc ion binding [GO:0008270]; photosystem I assembly [GO:0048564]; photosystem II assembly [GO:0010207]; regulation of chlorophyll biosynthetic process [GO:0010380]; response to cold [GO:0009409]; RNA modification [GO:0009451]; thylakoid membrane organization [GO:0010027] locus:2094374; AT3G22690 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E03M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411E03B FTSHI4 F4KF14 FTSI4_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic (AtFTSHI4) (Protein EMBRYO DEFECTIVE 3144) (Protein FTSH INACTIVE PROTEASE 4) DISRUPTION PHENOTYPE: Embryo defective (PubMed:24964212, PubMed:21139083). Impaired plastid biogenesis and thylakoid differentiation in embryo. Defects in the photosystem II protein complex formation (PubMed:24964212). {ECO:0000269|PubMed:24964212, ECO:0000303|PubMed:21139083}. Embryo defective; Globular-D. Meinke-2011 FUNCTION: Functions in chloroplast biogenesis and chloroplast division. Required for plastid development during embryogenesis (PubMed:24964212). Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex (PubMed:12185496). {ECO:0000269|PubMed:24964212, ECO:0000303|PubMed:12185496}. 96854 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic (AtFTSHI4) (Protein EMBRYO DEFECTIVE 3144) (Protein FTSH INACTIVE PROTEASE 4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metallopeptidase activity [GO:0008237]; embryo development ending in seed dormancy [GO:0009793]; proteolysis [GO:0006508] TISSUE SPECIFICITY: Ubiquitous but preferentially expressed in young leaves. {ECO:0000269|PubMed:24964212}. locus:2174819; AT5G64580 ATP-dependent zinc metalloprotease FtsH-like NA NA NA NA NA NA NA ENOG411E03C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gibberellin 2-beta-dioxygenase Os01g0209700 protein (Putative GA 2-oxidase 5),Os05g0208550 protein (Fragment) Q9LWE4,A0A0P0WJ65 Q9LWE4_ORYSJ,A0A0P0WJ65_ORYSJ Os01g0209700 Os01g0209700 OSNPB_010209700 P0466B10.9,Os05g0208550 OSNPB_050208550 ENOG411E03A Q9C711,F4IEV7 Q9C711_ARATH,F4IEV7_ARATH AAR2 protein family (At1g66510/F28G11_5) (Uncharacterized protein F28G11.5),AAR2 protein family 45610,40852 AAR2 protein family (At1g66510/F28G11_5) (Uncharacterized protein F28G11.5),AAR2 protein family spliceosomal tri-snRNP complex assembly [GO:0000244] locus:2028992; AT1G66510 AAR2 protein Os04g0132300 protein (Fragment) A0A0P0W6D8 A0A0P0W6D8_ORYSJ Os04g0132300 OSNPB_040132300 ENOG411E03F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase Acylhydrolase Os01g0216000 protein (Putative esterase) (cDNA clone:001-015-E09, full insert sequence) (cDNA clone:006-210-G04, full insert sequence),Os01g0216400 protein (Putative esterase),Os01g0216300 protein (Putative esterase) (cDNA clone:002-130-B05, full insert sequence),Os01g0216500 protein,Os01g0216900 protein (Fragment) Q9LHW4,Q9LHW0,Q5QNK2,A0A0P0V0B8,A0A0P0UZM4 Q9LHW4_ORYSJ,Q9LHW0_ORYSJ,Q5QNK2_ORYSJ,A0A0P0V0B8_ORYSJ,A0A0P0UZM4_ORYSJ Os01g0216000 Os01g0216000 OsJ_00877 OSNPB_010216000 P0515G01.29,Os01g0216400 Os01g0216400 OSNPB_010216400 P0515G01.35,Os01g0216300 Os01g0216300 OsJ_00878 OSNPB_010216300 P0515G01.34,Os01g0216500 OSNPB_010216500,Os01g0216900 OSNPB_010216900 ENOG411E03G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase Patatin (EC 3.1.1.-) Q6ASS6 Q6ASS6_ORYSJ Os03g0640000 LOC_Os03g43880 Os03g0640000 B1394A07.15 OSNPB_030640000 FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411E03D ATJ20,J20 Q9SDN0,A0A1P8B6G1,Q3EA41 DNJ20_ARATH,A0A1P8B6G1_ARATH,Q3EA41_ARATH Chaperone protein dnaJ 20, chloroplastic (AtDjC20) (AtJ20),DNAJ-like 20 FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 23361,21480,18288 Chaperone protein dnaJ 20, chloroplastic (AtDjC20) (AtJ20),DNAJ-like 20 chloroplast [GO:0009507]; nucleus [GO:0005634]; chaperone-mediated protein folding [GO:0061077]; regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity [GO:1902395]; regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0010322] TISSUE SPECIFICITY: Light-grown seedlings. {ECO:0000269|Ref.1}. locus:2119465; AT4G13830 Chaperone protein dnaJ 20 Os01g0101700 protein A0A0P0UXD4 A0A0P0UXD4_ORYSJ Os01g0101700 OSNPB_010101700 ENOG411E03E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os01g0653700 protein (Plant disease resistance polyprotein-like),Os03g0147001 protein,Os03g0157000 protein,Os03g0146900 protein Q5VPA9,A0A0P0VSZ7,A0A0N7KGL7,A0A0P0VT38 Q5VPA9_ORYSJ,A0A0P0VSZ7_ORYSJ,A0A0N7KGL7_ORYSJ,A0A0P0VT38_ORYSJ Os01g0653700 OsJ_02854 OSJNBb0006H05.17-1 OSJNBb0032K15.36-1 OSNPB_010653700,Os03g0147001 OSNPB_030147001,Os03g0157000 OSNPB_030157000,Os03g0146900 OSNPB_030146900 ENOG411E03Z Q9SFC7 FB135_ARATH F-box protein At3g07870 47682 F-box protein At3g07870 plasmodesma [GO:0009506] locus:2077452; AT3G07870 f-box family NA NA NA NA NA NA NA ENOG411E03X CIPK5,CIPK25 Q9LEU7,Q8W1D5 CIPK5_ARATH,CIPKP_ARATH CBL-interacting serine/threonine-protein kinase 5 (EC 2.7.11.1) (SNF1-related kinase 3.24) (SOS2-like protein kinase PKS19),CBL-interacting serine/threonine-protein kinase 25 (EC 2.7.11.1) (SNF1-related kinase 3.25) (SOS2-like protein kinase PKS25) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 50875,55563 CBL-interacting serine/threonine-protein kinase 5 (EC 2.7.11.1) (SNF1-related kinase 3.24) (SOS2-like protein kinase PKS19),CBL-interacting serine/threonine-protein kinase 25 (EC 2.7.11.1) (SNF1-related kinase 3.25) (SOS2-like protein kinase PKS25) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to fungus [GO:0050832]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] locus:2183720;,locus:2179260; AT5G10930,AT5G25110 CBL-interacting serine threonine-protein kinase CBL-interacting protein kinase 16 (EC 2.7.11.1) (OsCIPK16),Non-specific serine/threonine protein kinase (EC 2.7.11.1) (Fragment) Q6ERS4,A0A0P0XN04 CIPKG_ORYSJ,A0A0P0XN04_ORYSJ CIPK16 Os09g0418000 LOC_Os09g25090 P0701F11.5-1,Os09g0418000 OSNPB_090418000 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411E03Y Q9LU25 Q9LU25_ARATH DNA-directed RNA polymerase subunit beta 52164 DNA-directed RNA polymerase subunit beta endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2094962; AT3G16200 NA Os01g0496900 protein A0A0P0V3C4 A0A0P0V3C4_ORYSJ Os01g0496900 OSNPB_010496900 ENOG411E03S MTERF9,MDF20.2 Q9FM80,A0A1P8B9X1,A0A1P8B9W9 MTEF9_ARATH,A0A1P8B9X1_ARATH,A0A1P8B9W9_ARATH Transcription termination factor MTERF9, chloroplastic (Mitochondrial transcription termination factor 9) (Protein TWIRT1),Mitochondrial transcription termination factor family protein DISRUPTION PHENOTYPE: Variegated leaves, reduced growth and altered structure of chloroplasts. Altered responses to sugars, abscisic acid (ABA), salt and osmotic stresses during seedling establishment (PubMed:25393651). Altered root and shoot meristem function resulting in reduced organ growth (PubMed:21599977). {ECO:0000269|PubMed:21599977, ECO:0000269|PubMed:25393651}. altered root meristem function resulting in short roots also affecting the shoot meristem. FUNCTION: Transcription termination factor required for processing and steady-state levels of plastid transcripts. May play a role in response to abiotic stresses. {ECO:0000269|PubMed:25393651}. 57202,45016,45334 Transcription termination factor MTERF9, chloroplastic (Mitochondrial transcription termination factor 9) (Protein TWIRT1),Mitochondrial transcription termination factor family protein chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380]; root development [GO:0048364]; shoot system development [GO:0048367],double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355] locus:2162092; AT5G55580 mitochondrial transcription termination factor family protein Os07g0583200 protein (cDNA clone:J023107L13, full insert sequence) Q84ZT1 Q84ZT1_ORYSJ OJ1127_E01.105 Os07g0583200 OsJ_24896 OSNPB_070583200 ENOG411E03P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411E03W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein WAT1-related protein,WAT1-related protein (Fragment) Q5JKD5,A0A0P0V3T9 Q5JKD5_ORYSJ,A0A0P0V3T9_ORYSJ Os01g0546400 Os01g0546400 OSJNBa0026J14.16 OSNPB_010546400,Os01g0546100 OSNPB_010546100 ENOG411E03U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E038 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inorganic phosphate transporter NA NA NA NA NA NA NA ENOG411E039 Q9SSM2 MDLL_ARATH (R)-mandelonitrile lyase-like (EC 4.1.2.10) (Hydroxynitrile lyase-like) ((R)-oxynitrilase-like) ARA:AT1G73050-MONOMER; R-ATH-6798163; 4.1.2.10 60783 (R)-mandelonitrile lyase-like (EC 4.1.2.10) (Hydroxynitrile lyase-like) ((R)-oxynitrilase-like) flavin adenine dinucleotide binding [GO:0050660]; mandelonitrile lyase activity [GO:0046593]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2032642; AT1G73050 GMC oxidoreductase Os06g0656000 protein (Fragment) A0A0N7KMI8 A0A0N7KMI8_ORYSJ Os06g0656000 OSNPB_060656000 ENOG411E030 Q9SSC7,Q9LVZ8 LOR5_ARATH,LOR12_ARATH Protein LURP-one-related 5,Protein LURP-one-related 12 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 23454,24817 Protein LURP-one-related 5,Protein LURP-one-related 12 locus:2016299;,locus:2093242; AT1G80120,AT3G15810 Pfam:DUF567 NA NA NA NA NA NA NA ENOG411E031 PKS4 Q9FYE2 PKS4_ARATH Protein PHYTOCHROME KINASE SUBSTRATE 4 DISRUPTION PHENOTYPE: Reduced phototropic response. Altered light-induced deviation from vertical growth and decreased phytochrome-mediated inhibition of hypocotyl elongation and cotyledon opening. No visible phenotype at the level of leaf flattening and leaf positioning. No effect on negative root phototropism. {ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:18024556, ECO:0000269|PubMed:18390804, ECO:0000269|PubMed:20071603}. FUNCTION: Modulates phytochrome-mediated control of hypocotyl growth orientation. Involved in PHYA and PHYB signaling. Acts as an inhibitor of asymmetric growth. Not involved in the control of leaf flattening. {ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:18390804, ECO:0000269|PubMed:20071603}. MISCELLANEOUS: PKS1, PKS2 and/or PKS4 are essential for phototropism but not for inhibition of gravitropism under long-term blue light irradiation. 44458 Protein PHYTOCHROME KINASE SUBSTRATE 4 phototropism [GO:0009638]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585] TISSUE SPECIFICITY: Expressed in the hypocotyl elongation zone. Not found in the root elongation zone. {ECO:0000269|PubMed:18390804}. locus:2146638; AT5G04190 phytochrome kinase substrate Os01g0264600 protein,Os05g0431200 protein Q9LDC2,A0A0P0WMM0 Q9LDC2_ORYSJ,A0A0P0WMM0_ORYSJ Os01g0264600 Os01g0264600 OSNPB_010264600 P0453A06.26 P0499C11.8,Os05g0431200 OSNPB_050431200 ENOG411E036 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os04g0320900 protein A0A0P0W8Q2 A0A0P0W8Q2_ORYSJ Os04g0320900 OSNPB_040320900 ENOG411E035 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clp amino terminal domain Os11g0156800 protein (Fragment) Q0IUH4 Q0IUH4_ORYSJ Os11g0156800 OSNPB_110156800 ENOG411EH3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome b5-like Heme/Steroid binding domain NA NA NA NA NA NA NA ENOG411EH3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DCN1 defective in cullin neddylation 1 domain containing NA NA NA NA NA NA NA ENOG411EH3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0665400 protein Q6ESH6 Q6ESH6_ORYSJ P0461B08.18-1 Os02g0665400 OJ1486_E07.3-1 OSNPB_020665400 ENOG411EH3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene insensitive 3 Os07g0223600 protein Q8LIR8 Q8LIR8_ORYSJ OJ1118_B03.107 Os07g0223600 OSNPB_070223600 ENOG411EH3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: WRKY DNA binding domain containing protein expressed Os07g0460900 protein A0A0P0X5B9 A0A0P0X5B9_ORYSJ Os07g0460900 OSNPB_070460900 ENOG411EH3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3H Q9SEY4,A8MS72 Q9SEY4_ARATH,A8MS72_ARATH At2g17660 (RPM1-interacting protein 4 (RIN4) family protein),RPM1-interacting protein 4 (RIN4) family protein 7540,7466 At2g17660 (RPM1-interacting protein 4 (RIN4) family protein),RPM1-interacting protein 4 (RIN4) family protein locus:2827881;,locus:4010713927; AT2G17660,AT4G35655 nitrate-responsive NOI protein NA NA NA NA NA NA NA ENOG411EH3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sea anemone cytotoxic protein NA NA NA NA NA NA NA ENOG411EH3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain NA NA NA NA NA NA NA ENOG411EH3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0454300 protein) (cDNA clone:J033013M12, full insert sequence),Os10g0452700 protein,Expressed protein (Os10g0453900 protein) (cDNA, clone: J100022N22, full insert sequence),Expressed protein (Os10g0454200 protein) (cDNA, clone: J100060H16, full insert sequence),Os10g0453800 protein Q7XDR9,Q7XDT3,Q7XDS2,Q7XDS0,A0A0P0XVH8 Q7XDR9_ORYSJ,Q7XDT3_ORYSJ,Q7XDS2_ORYSJ,Q7XDS0_ORYSJ,A0A0P0XVH8_ORYSJ Os10g0454300 LOC_Os10g31670 Os10g0454300 OsJ_31756 OSNPB_100454300,LOC_Os10g31510 Os10g0452700 OSNPB_100452700,LOC_Os10g31640 Os10g0453900 OsJ_31753 OSNPB_100453900,Os10g0454200 LOC_Os10g31660 Os10g0454200 OsJ_31755 OSNPB_100454200,Os10g0453800 OSNPB_100453800 ENOG411EH3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0121400 protein A0A0P0VE87 A0A0P0VE87_ORYSJ Os02g0121400 OSNPB_020121400 ENOG411EH3V CLE22 Q3E9I4 CLE22_ARATH CLAVATA3/ESR (CLE)-related protein 22 [Cleaved into: CLE22p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16407446, ECO:0000269|PubMed:16902140}. 11510 CLAVATA3/ESR (CLE)-related protein 22 [Cleaved into: CLE22p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; maintenance of root meristem identity [GO:0010078]; root development [GO:0048364]; vasculature development [GO:0001944] TISSUE SPECIFICITY: Mostly expressed in stems and apex, and, to a lower extent, in seedlings, leaves, flowers and siliques. {ECO:0000269|PubMed:12602871}. locus:504954845; AT5G12235 NA NA NA NA NA NA NA NA ENOG411EH3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase At4g10955-like NA NA NA NA NA NA NA ENOG411EH3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L34e NA NA NA NA NA NA NA ENOG411EH3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Expressed protein (Os03g0639400 protein) (Pectinesterase inhibitor domain containing protein, expressed) (cDNA clone:002-171-A02, full insert sequence) Q6AUE9 Q6AUE9_ORYSJ OSJNBb0029I19.3 LOC_Os03g43820 Os03g0639400 OSNPB_030639400 ENOG411EH32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAF domain NA NA NA NA NA NA NA ENOG411EH33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger domain NA NA NA NA NA NA NA ENOG411EH31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os05g0122250 protein,Os01g0274000 protein A0A0N7KK25,A0A0P0V131 A0A0N7KK25_ORYSJ,A0A0P0V131_ORYSJ Os05g0122250 OSNPB_050122250,Os01g0274000 OSNPB_010274000 ENOG411EH34 CLE1 Q3ECD6 CLE1_ARATH CLAVATA3/ESR (CLE)-related protein 1 [Cleaved into: CLE1p] FUNCTION: Extracellular signal peptide that regulates cell fate. {ECO:0000269|PubMed:16407446}. 8338 CLAVATA3/ESR (CLE)-related protein 1 [Cleaved into: CLE1p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in roots and seedlings, and, to a lower extent, in stems and apex. {ECO:0000269|PubMed:12602871}. locus:504956162; AT1G73165 NA NA NA NA NA NA NA NA ENOG411EH35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0129800 protein (cDNA clone:002-156-D07, full insert sequence) Q6Z6Y4 Q6Z6Y4_ORYSJ Os02g0129800 OsJ_05239 OSNPB_020129800 P0576F08.30 ENOG411EH38 MJE4.10 Q58G55,Q8H1G2,A0A1P8B7U6,F4HNV0,F4JZX5,F4I970,A0A1P8AVR8,A0A1P8AVW5,F4HSA3 Q58G55_ARATH,Q8H1G2_ARATH,A0A1P8B7U6_ARATH,F4HNV0_ARATH,F4JZX5_ARATH,F4I970_ARATH,A0A1P8AVR8_ARATH,A0A1P8AVW5_ARATH,F4HSA3_ARATH Endonuclease/glycosyl hydrolase,Putative endonuclease or glycosyl hydrolase (Uncharacterized protein At4g20480),Putative endonuclease or glycosyl hydrolase,Uncharacterized protein 22813,29213,23981,15826,21286,16407,16229,24685,25102 Endonuclease/glycosyl hydrolase,Putative endonuclease or glycosyl hydrolase (Uncharacterized protein At4g20480),Putative endonuclease or glycosyl hydrolase,Uncharacterized protein peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468],peroxisome [GO:0005777]; regulation of gene expression [GO:0010468],endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676],peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; regulation of gene expression [GO:0010468] locus:2033113;,locus:2128654;,locus:504956220;,locus:2165902;,locus:4515102576;,locus:4515102486; AT1G06810,AT4G20480,AT1G06925,AT5G35640,AT1G24256,AT1G01355 Pfam:DUF88 NA NA NA NA NA NA NA ENOG411EH39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EFM6 Q84WC1 Q84WC1_ARATH Uncharacterized protein At1g68875 16823 Uncharacterized protein At1g68875 locus:505006211; AT1G68875 NA NA NA NA NA NA NA NA ENOG411EFM7 SPEAR2,TIE4 F4IGU3,A0A1P8B2G6 SPER2_ARATH,A0A1P8B2G6_ARATH Protein SPEAR2 (SPL-like, EAR-containing protein 2) (TCP interactor containing EAR motif protein 4),Verprolin FUNCTION: Adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors (By similarity). May be involved in leaf development. {ECO:0000250|UniProtKB:Q6IDB0, ECO:0000305|PubMed:23444332}. MISCELLANEOUS: Knock down expression of SPEAR2/TIE4 and SPEAR4/TIE3 by RNAi in a SPEAR3/TIE1 null mutant produces lines displaying epinastic leaves. {ECO:0000269|PubMed:23444332}. 33576,27744 Protein SPEAR2 (SPL-like, EAR-containing protein 2) (TCP interactor containing EAR motif protein 4),Verprolin leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:23444332}. locus:2055450; AT2G34010 NA NA NA NA NA NA NA NA ENOG411EFM4 ERF120 Q9SK67 EF120_ARATH Ethylene-responsive transcription factor ERF120 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 17461 Ethylene-responsive transcription factor ERF120 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2038927; AT2G20350 AP2 NA NA NA NA NA NA NA ENOG411EFM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells Os04g0533200 protein,Os04g0389600 protein (Fragment),Os12g0175400 protein (Fragment) A0A0P0WCU3,A0A0P0W9M6,A0A0P0Y844 A0A0P0WCU3_ORYSJ,A0A0P0W9M6_ORYSJ,A0A0P0Y844_ORYSJ Os04g0533200 OSNPB_040533200,Os04g0389600 OSNPB_040389600,Os12g0175400 OSNPB_120175400 ENOG411EFM3 Q9SJQ2 Q9SJQ2_ARATH AT hook motif DNA-binding family protein (Uncharacterized protein At2g36560) 61191 AT hook motif DNA-binding family protein (Uncharacterized protein At2g36560) DNA binding [GO:0003677] locus:2044878; AT2G36560 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411EFM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EFM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: specific peptidase NA NA NA NA NA NA NA ENOG411EFMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EFMG Q9C7W1 Q9C7W1_ARATH Filaggrin-like protein (Uncharacterized protein At1g64370) (Uncharacterized protein F15H21.1) 19697 Filaggrin-like protein (Uncharacterized protein At1g64370) (Uncharacterized protein F15H21.1) locus:2014195; AT1G64370 NA NA NA NA NA NA NA NA ENOG411EFME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0712000 protein,Os01g0712500 protein (Fragment) Q9ASD0,A0A0N7KDM0 Q9ASD0_ORYSJ,A0A0N7KDM0_ORYSJ Os01g0712000 B1142C05.13 OSNPB_010712000 P0456F08.38,Os01g0712500 OSNPB_010712500 ENOG411EFMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411EFMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3123) Os07g0512800 protein,Os03g0622800 protein,Os07g0514700 protein,Os05g0210300 protein,Os07g0514200 protein,Os07g0504900 protein,Os07g0513700 protein,Os07g0514300 protein,Os07g0512600 protein (Os07g0513900 protein),Os07g0514000 protein,Os07g0512900 protein Q84NW3,Q75LE8,Q84NU1,B9FN31,Q84NU6,Q6Z464,Q84NV3,Q84NU5,Q84K69,Q84NV1,Q84NW2 Q84NW3_ORYSJ,Q75LE8_ORYSJ,Q84NU1_ORYSJ,B9FN31_ORYSJ,Q84NU6_ORYSJ,Q6Z464_ORYSJ,Q84NV3_ORYSJ,Q84NU5_ORYSJ,Q84K69_ORYSJ,Q84NV1_ORYSJ,Q84NW2_ORYSJ P0580A11.130 Os07g0512800 OSJNBb0041J06.111 OSNPB_070512800,Os03g0622800 LOC_Os03g42490 OsJ_11774 OSJNBb0079B16.21 OSNPB_030622800,P0048D08.107 Os07g0514700 OsJ_24440 OSJNBb0041J06.143 OSNPB_070514700,Os05g0210300 OsJ_17528 OSNPB_050210300,Os07g0514200 P0048D08.102 OSJNBb0041J06.138 OSNPB_070514200,Os07g0504900 OsJ_24372 OSNPB_070504900 P0430F03.44,OSJNBb0041J06.127 Os07g0513700 OSNPB_070513700,Os07g0514300 P0048D08.103 OsJ_24434 OSJNBb0041J06.139 OSNPB_070514300,P0580A11.127 Os07g0512600 Os07g0513900 OsJ_24438 OSJNBb0041J06.108 OSJNBb0041J06.130 OSNPB_070512600 OSNPB_070513900,OSJNBb0041J06.132 Os07g0514000 OSNPB_070514000,P0580A11.133 Os07g0512900 OsJ_24422 OSJNBb0041J06.114 OSNPB_070512900 ENOG411EFMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor NA NA NA NA NA NA NA ENOG411EFMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EFMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EFMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function DUF223 Os11g0697050 protein,Os01g0137282 protein,Os01g0137200 protein,Os01g0136450 protein Q2QZ79,A0A0P0UY09,A0A0P0UYE0,A0A0P0UY86 Q2QZ79_ORYSJ,A0A0P0UY09_ORYSJ,A0A0P0UYE0_ORYSJ,A0A0P0UY86_ORYSJ Os11g0697050 LOC_Os11g47400 OSNPB_110697050,Os01g0137282 OSNPB_010137282,Os01g0137200 OSNPB_010137200,Os01g0136450 OSNPB_010136450 ENOG411EFMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Coiled-coil domain containing 97 Os04g0515200 protein,Os01g0712400 protein B9FG51,Q5N8D6 B9FG51_ORYSJ,Q5N8D6_ORYSJ Os04g0515200 OsJ_15456 OSNPB_040515200,Os01g0712400 B1142C05.17 OsJ_03226 OSNPB_010712400 P0456F08.42 ENOG411EFMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EFMS Q1PES4 Q1PES4_ARATH RNA recognition motif-containing protein (RNA-binding (RRM/RBD/RNP motifs) family protein) 36510 RNA recognition motif-containing protein (RNA-binding (RRM/RBD/RNP motifs) family protein) RNA binding [GO:0003723] locus:2077577; AT3G06970 RNA binding nucleic acid binding nucleotide binding NA NA NA NA NA NA NA ENOG411EFMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0496900 protein A0A0P0WP40 A0A0P0WP40_ORYSJ Os05g0496900 OSNPB_050496900 ENOG411EFMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EFMY Q6E244 Y3258_ARATH UPF0725 protein At3g25080 19361 UPF0725 protein At3g25080 locus:2090280; AT3G25080 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EDH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EDH2 TOE2 Q9LVG2,A0A1P8BEK5,A0A1P8BEK0,F4JXG9 TOE2_ARATH,A0A1P8BEK5_ARATH,A0A1P8BEK0_ARATH,F4JXG9_ARATH AP2-like ethylene-responsive transcription factor TOE2 (Protein TARGET OF EAT 2),Target of early activation tagged (EAT) 2 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. 53164,45537,52402,55889 AP2-like ethylene-responsive transcription factor TOE2 (Protein TARGET OF EAT 2),Target of early activation tagged (EAT) 2 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] locus:2164170; AT5G60120 AP2 NA NA NA NA NA NA NA ENOG411EDH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEP NA NA NA NA NA NA NA ENOG411EDHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os06g0189600 protein (cDNA clone:006-201-E02, full insert sequence) (cDNA clone:J023127G11, full insert sequence),Os01g0927800 protein,Os06g0189600 protein (cDNA clone:002-126-H06, full insert sequence),Os04g0677000 protein (Fragment),Os03g0104400 protein (Fragment),Os10g0167800 protein,Os07g0647700 protein,Os07g0647750 protein Q69KK0,Q8RYL9,Q69KK3,Q0J913,A0A0P0VRX5,A0A0P0XRY9,A0A0P0X9L0,A0A0P0X9E7 Q69KK0_ORYSJ,Q8RYL9_ORYSJ,Q69KK3_ORYSJ,Q0J913_ORYSJ,A0A0P0VRX5_ORYSJ,A0A0P0XRY9_ORYSJ,A0A0P0X9L0_ORYSJ,A0A0P0X9E7_ORYSJ Os06g0189600 Os06g0189600 OSJNBa0090D06.14 OSJNBb0005A05.45 OSNPB_060189600,Os01g0927800 OsJ_04628 OSJNBa0052O12.1 OSJNBa0093F16.37 OSNPB_010927800,Os06g0189600 OsJ_20403 OSJNBa0090D06.11 OSJNBb0005A05.42 OSNPB_060189600,Os04g0677000 Os04g0677000 OSNPB_040677000,Os03g0104400 OSNPB_030104400,Os10g0167800 OSNPB_100167800,Os07g0647700 OSNPB_070647700,Os07g0647750 OSNPB_070647750 ENOG411EDHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411DPZJ MDK4.12 Q9SXA8,Q9FL70,F4HTI9,F4I7E9 Q9SXA8_ARATH,Q9FL70_ARATH,F4HTI9_ARATH,F4I7E9_ARATH Cotton fiber, putative (DUF761) (T28P6.12 protein),Cotton fiber expressed protein 1-like protein (Cotton fiber-like protein (DUF761)),Cotton fiber (DUF761),Cotton fiber, putative (DUF761) 36406,36449,38877,34594 Cotton fiber, putative (DUF761) (T28P6.12 protein),Cotton fiber expressed protein 1-like protein (Cotton fiber-like protein (DUF761)),Cotton fiber (DUF761),Cotton fiber, putative (DUF761) integral component of membrane [GO:0016021] locus:2162570;,locus:2008445;,locus:2202079; AT5G54300,AT1G61260,AT1G11220 fiber expressed protein Os07g0563400 protein (Putative fiber protein) (cDNA clone:002-101-C11, full insert sequence) Q8H348 Q8H348_ORYSJ OJ1720_F04.106 Os07g0563400 OSNPB_070563400 ENOG411DPZK HAG1 Q9AR19 GCN5_ARATH Histone acetyltransferase GCN5 (AtGCN5) (EC 2.3.1.48) (BIG TOP protein) DISRUPTION PHENOTYPE: Pleiotropic effects on plant growth and development, including dwarf size, aberrant root development, and short petals and stamens in flowers. No embryonic phenotype. {ECO:0000269|PubMed:12615937, ECO:0000269|PubMed:16763149}. Embryos form cotyledons at the transition stage of embryogenesis that appear slightly stunted at later stages compared to wt embryos. Dwarf; Increased branching; Short roots; Small rosette; Serrated, chlorotic leaves; Short stamens and petals; Reduced fertility-S. Triezenberg-2003 FUNCTION: Acetylates histone H3 and ADA2 proteins in vitro. Acetylates 'Lys-14' of histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity). {ECO:0000250, ECO:0000269|PubMed:11266554, ECO:0000269|PubMed:12615937, ECO:0000269|PubMed:16603259, ECO:0000269|PubMed:16648464, ECO:0000269|PubMed:16763149}. MISCELLANEOUS: Mutations in HAG1 suppress the tpl-1 phenotype showing a transformation during embryogenesis of the shoot pole into a second root pole. R-ATH-5689880;R-ATH-5693565; 2.3.1.48; 2.3.1.48 63124 Histone acetyltransferase GCN5 (AtGCN5) (EC 2.3.1.48) (BIG TOP protein) histone acetyltransferase complex [GO:0000123]; nucleus [GO:0005634]; acetyltransferase activity [GO:0016407]; DNA binding [GO:0003677]; H3 histone acetyltransferase activity [GO:0010484]; histone acetyltransferase activity [GO:0004402]; flower development [GO:0009908]; histone acetylation [GO:0016573]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of vegetative phase change [GO:0010321]; response to light stimulus [GO:0009416]; root morphogenesis [GO:0010015]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:11266554}. locus:3354973; AT3G54610 histone acetyltransferase Histone acetyltransferase GCN5 (EC 2.3.1.48) Q338B9 GCN5_ORYSJ GCN5 Os10g0415900 LOC_Os10g28040 FUNCTION: Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity). {ECO:0000250}. ENOG411DPZH O23470,O23469,A0A1P8B6B7 GDL64_ARATH,GDL63_ARATH,A0A1P8B6B7_ARATH GDSL esterase/lipase At4g16230 (EC 3.1.1.-) (Extracellular lipase At4g16230),GDSL esterase/lipase At4g16220 (EC 3.1.1.-) (Extracellular lipase At4g16220),GDSL-like lipase/acylhydrolase superfamily protein ARA:AT4G16230-MONOMER; 3.1.1.- 40242,26592,15136 GDSL esterase/lipase At4g16230 (EC 3.1.1.-) (Extracellular lipase At4g16230),GDSL esterase/lipase At4g16220 (EC 3.1.1.-) (Extracellular lipase At4g16220),GDSL-like lipase/acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042],hydrolase activity [GO:0016787] AT4G16230,AT4G16220 GDSL esterase lipase At4g16230-like GDSL-like Lipase/Acylhydrolase family protein, expressed (Os03g0310000 protein) Q10MG0 Q10MG0_ORYSJ Os03g0310000 LOC_Os03g19670 Os03g0310000 OsJ_10588 OSNPB_030310000 ENOG411DPZI HISN6B,HISN6A P0DI07,B9DHD3,A8MRI5,F4IBL7 HIS6B_ARATH,HIS6A_ARATH,A8MRI5_ARATH,F4IBL7_ARATH Histidinol-phosphate aminotransferase 2, chloroplastic (EC 2.6.1.9) (Gene duplicate 1-A protein) (Imidazole acetol-phosphate transaminase) (Protein HISTIDINE BIOSYNTHESIS 6B),Histidinol-phosphate aminotransferase 1, chloroplastic (EC 2.6.1.9) (Gene duplicate 1-B protein) (Imidazole acetol-phosphate transaminase) (Protein EMBRYO DEFECTIVE 2196) (Protein HISTIDINE BIOSYNTHESIS 6A),HISTIDINE BIOSYNTHESIS 6B (Histidinol phosphate aminotransferase 1),HISTIDINE BIOSYNTHESIS 6B Short roots. Initial development is normal but by 7 days post germination organization of the root apex begins to show abnormalities. Null: Embryo defective; Preglobular; Knockdown: Short roots-D. Meinke-2003 PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9. 2.6.1.9 46635,40665,46361 Histidinol-phosphate aminotransferase 2, chloroplastic (EC 2.6.1.9) (Gene duplicate 1-A protein) (Imidazole acetol-phosphate transaminase) (Protein HISTIDINE BIOSYNTHESIS 6B),Histidinol-phosphate aminotransferase 1, chloroplastic (EC 2.6.1.9) (Gene duplicate 1-B protein) (Imidazole acetol-phosphate transaminase) (Protein EMBRYO DEFECTIVE 2196) (Protein HISTIDINE BIOSYNTHESIS 6A),HISTIDINE BIOSYNTHESIS 6B (Histidinol phosphate aminotransferase 1),HISTIDINE BIOSYNTHESIS 6B chloroplast stroma [GO:0009570]; histidinol-phosphate transaminase activity [GO:0004400]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; histidine biosynthetic process [GO:0000105],chloroplast [GO:0009507]; histidinol-phosphate transaminase activity [GO:0004400]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; histidine biosynthetic process [GO:0000105],histidinol-phosphate transaminase activity [GO:0004400]; pyridoxal phosphate binding [GO:0030170]; histidine biosynthetic process [GO:0000105] TISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:14671323}. locus:2016099;,locus:2145382; AT1G71920,AT5G10330,AT1G71920AT5G10330; Histidinol-phosphate aminotransferase Os02g0709200 protein (cDNA clone:001-020-G08, full insert sequence) (cDNA clone:J023002D16, full insert sequence) Q0DY86 Q0DY86_ORYSJ Os02g0709200 Os02g0709200 OSNPB_020709200 ENOG411DPZN Q9LUX9 FQRL3_ARATH Probable NAD(P)H dehydrogenase (quinone) FQR1-like 3 (EC 1.6.5.2) FUNCTION: Catalyzes the transfer of electrons from NADH and NADPH to reduce quinone to the hydroquinone state. {ECO:0000250|UniProtKB:Q9LSQ5}. ARA:AT5G58800-MONOMER; 1.6.5.2 22723 Probable NAD(P)H dehydrogenase (quinone) FQR1-like 3 (EC 1.6.5.2) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; FMN binding [GO:0010181]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955] locus:2178868; AT5G58800 NADPH-dependent FMN reductase NA NA NA NA NA NA NA ENOG411DPZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Emopamil binding protein NA NA NA NA NA NA NA ENOG411DPZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: zinc finger CCCH-type containing 14 Os04g0472400 protein (Fragment) A0A0P0WBG2 A0A0P0WBG2_ORYSJ Os04g0472400 OSNPB_040472400 ENOG411DPZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance Os01g0925100 protein,NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (Os03g0709200 protein),Os08g0190300 protein Q0JGG1,Q53RK5,A0A0P0XCM1 Q0JGG1_ORYSJ,Q53RK5_ORYSJ,A0A0P0XCM1_ORYSJ Os01g0925100 Os01g0925100 OSNPB_010925100,Os03g0709200 LOC_Os03g50150 Os03g0709200 OSNPB_030709200,Os08g0190300 OSNPB_080190300 ENOG411DPZA TPK2,TPK1 F4IV16,B9DGU7,A0A1P8ARA0,B3H6N1 TPK2_ARATH,TPK1_ARATH,A0A1P8ARA0_ARATH,B3H6N1_ARATH Thiamine pyrophosphokinase 2 (AtTPK2) (EC 2.7.6.2) (Thiamine kinase 2),Thiamine pyrophosphokinase 1 (AtTPK1) (EC 2.7.6.2) (Thiamine kinase 1),Thiamin pyrophosphokinase1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Tpk1 and tpk2 double mutants exhibit a seedling lethal phenotype. {ECO:0000269|PubMed:17611796}. These double knock-out mutants are thiamine auxotrophs that have a seedling lethal phenotype unless they are supplied with exogenous thiamine pyrophosphate (TPP) through a spray-based application. In addition these mutants have 2-fold higher levels of thiamine and 32-fold lower levels of TPP than wild type plants.,The AtTPK2-KO single mutant does not have any obvious aberrant phenotypes but the AtTPK1-KO /AtTPK2-KO double mutant demonstrates that these enzymes are required to produce thiamine pyrophosphate from thiamine.,The AtTPK1-KO single mutant does not have any obvious aberrant phenotypes but the AtTPK1-KO /AtTPK2-KO double mutant demonstrates that these enzymes are required to produce thiamine pyrophosphate from thiamine. FUNCTION: Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate (TPP). TPP is an active cofactor for enzymes involved in glycolysis and energy production. Plant leaves require high levels of TPP for photosynthesis and carbohydrate metabolism. {ECO:0000269|PubMed:17611796}. PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine diphosphate from thiamine: step 1/1. R-ATH-196819; 2.7.6.2; 2.7.6.2 30214,29879,30582,20070 Thiamine pyrophosphokinase 2 (AtTPK2) (EC 2.7.6.2) (Thiamine kinase 2),Thiamine pyrophosphokinase 1 (AtTPK1) (EC 2.7.6.2) (Thiamine kinase 1),Thiamin pyrophosphokinase1 cytosol [GO:0005829]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; thiamine binding [GO:0030975]; thiamine diphosphokinase activity [GO:0004788]; thiamine diphosphate biosynthetic process [GO:0009229]; thiamine metabolic process [GO:0006772],ATP binding [GO:0005524]; kinase activity [GO:0016301]; thiamine binding [GO:0030975]; thiamine diphosphokinase activity [GO:0004788]; thiamine diphosphate biosynthetic process [GO:0009229]; thiamine metabolic process [GO:0006772] TISSUE SPECIFICITY: Expressed in leaves and at lower levels in flowers. {ECO:0000269|PubMed:17611796}.,TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:17611796}. locus:2042436;,locus:2024660; AT2G44750,AT1G02880 thiamin pyrophosphokinase Thiamine pyrophosphokinase 3 (OsTPK3) (EC 2.7.6.2) (Thiamine kinase 3),Thiamine pyrophosphokinase 1 (OsTPK1) (EC 2.7.6.2) (Thiamine kinase 1),Thiamine pyrophosphokinase 2 (OsTPK2) (EC 2.7.6.2) (Thiamine kinase 2),Os01g0931400 protein Q60DX1,Q5JK24,Q0JMW0,A0A0P0VCI8 TPK3_ORYSJ,TPK1_ORYSJ,TPK2_ORYSJ,A0A0P0VCI8_ORYSJ TPK3 Os05g0367400 LOC_Os05g30454 OsJ_18271 OSJNBa0090H02.18,TPK1 Os01g0931400 LOC_Os01g70580 OSJNBa0052O12.42-1 P0506E04.20-1,TPK2 Os01g0356500 LOC_Os01g25440 B1157F09.24 P0025H06.10,Os01g0931400 OSNPB_010931400 FUNCTION: Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate (TPP). TPP is an active cofactor for enzymes involved in glycolysis and energy production. Plant leaves require high levels of TPP for photosynthesis and carbohydrate metabolism (By similarity). {ECO:0000250}. ENOG411DPZF ZIP4,IRT3 O04089,Q8LE59,A0A1P8ARJ0,A0A1P8ARE2 ZIP4_ARATH,IRT3_ARATH,A0A1P8ARJ0_ARATH,A0A1P8ARE2_ARATH Zinc transporter 4, chloroplastic (ZRT/IRT-like protein 4),Fe(2+) transport protein 3, chloroplastic (Fe(II) transport protein 3) (Iron-regulated transporter 3),Iron regulated transporter 3 FUNCTION: May play a role in the transport of zinc in the plastids. Could also transport copper ions. {ECO:0000269|PubMed:9618566}.,FUNCTION: May play a role in the transport of iron in the plastids. {ECO:0000250}. 39286,45089,43891,32529 Zinc transporter 4, chloroplastic (ZRT/IRT-like protein 4),Fe(2+) transport protein 3, chloroplastic (Fe(II) transport protein 3) (Iron-regulated transporter 3),Iron regulated transporter 3 chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; iron ion transmembrane transporter activity [GO:0005381]; zinc ion transmembrane transporter activity [GO:0005385]; iron ion homeostasis [GO:0055072]; iron ion transport [GO:0006826]; response to nematode [GO:0009624]; zinc II ion transport [GO:0006829],integral component of membrane [GO:0016021]; zinc ion transmembrane transporter activity [GO:0005385],integral component of membrane [GO:0016021]; metal ion transmembrane transporter activity [GO:0046873] locus:2206011; AT1G10970,AT1G60960 transporter Zinc transporter 10 (ZRT/IRT-like protein 10) (OsZIP10),Zinc transporter 7 (ZRT/IRT-like protein 7) (OsZIP7),Os06g0566300 protein Q5Z653,Q6L8F7,A0A0P0WXY2 ZIP10_ORYSJ,ZIP7_ORYSJ,A0A0P0WXY2_ORYSJ ZIP10 Os06g0566300 LOC_Os06g37010 P0513E02.27 P0567G03.8,ZIP7 ZIP3 ZIP7a Os05g0198400 LOC_Os05g10940 OsJ_17459 OSJNBa0007C23.6,Os06g0566300 OSNPB_060566300 FUNCTION: Zinc transporter that may be involved in zinc uptake from the rhizosphere. {ECO:0000250}. ENOG411DPZG Q1PFI5,Q9SXC0 Q1PFI5_ARATH,Q9SXC0_ARATH Aldo/keto reductase (NAD(P)-linked oxidoreductase superfamily protein),NAD(P)-linked oxidoreductase superfamily protein (Putative Aldo/keto reductase) ARA:AT1G59950-MONOMER;,ARA:AT1G59960-MONOMER; R-ATH-156590;R-ATH-193144;R-ATH-193368;R-ATH-193775;R-ATH-193807;R-ATH-196108;R-ATH-2162123;R-ATH-5365859;R-ATH-5652227;R-ATH-5661270; 36030,36730 Aldo/keto reductase (NAD(P)-linked oxidoreductase superfamily protein),NAD(P)-linked oxidoreductase superfamily protein (Putative Aldo/keto reductase) oxidoreductase activity [GO:0016491],cytosol [GO:0005829]; oxidoreductase activity [GO:0016491]; response to salt stress [GO:0009651] locus:2025926;,locus:2025936; AT1G59950,AT1G59960 NAD(P)H-dependent oxidoreductase Probable NAD(P)H-dependent oxidoreductase 1 (EC 1.1.1.-),Deoxymugineic acid synthase 1 (OsDMAS1) (EC 1.1.1.285),Os10g0113375 protein (Fragment) Q7G764,Q10PE7,A0A0P0XR42 NADO1_ORYSJ,DMAS1_ORYSJ,A0A0P0XR42_ORYSJ Os10g0113000 LOC_Os10g02380 OJ1014H12.13 OSJNBb0012A20.18,DMAS1 LOC_Os03g13390 Os03g0237100 OJ1081D05.5,Os10g0113375 OSNPB_100113375 FUNCTION: May play a role in auxin-induced cell growth by generating hydroxyl radicals, which tends to increase cell wall loosening. {ECO:0000269|PubMed:15086826}.,FUNCTION: Catalyzes the reduction of a 3''-keto intermediate during the biosynthesis of 2'-deoxymugineic acid (DMA) from L-Met. Involved in the formation of phytosiderophores (MAs) belonging to the mugineic acid family and required to acquire iron. {ECO:0000269|PubMed:16926158}. ENOG411DPZD TOM40-2,TOM40-1,TOM40 Q9SX55,Q9LHE5,A0A1I9LPN4 TO402_ARATH,TO401_ARATH,A0A1I9LPN4_ARATH Probable mitochondrial import receptor subunit TOM40-2 (Translocase of outer membrane 40 kDa subunit homolog 2),Mitochondrial import receptor subunit TOM40-1 (Translocase of outer membrane 40 kDa subunit homolog 1) [Cleaved into: Mitochondrial import receptor subunit TOM40-1, N-terminally processed],Translocase of the outer mitochondrial membrane 40 FUNCTION: Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore. Directly involved in the pore formation (By similarity). {ECO:0000250}.,FUNCTION: Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore. Directly involved in the pore formation. 34473,34250,26245 Probable mitochondrial import receptor subunit TOM40-2 (Translocase of outer membrane 40 kDa subunit homolog 2),Mitochondrial import receptor subunit TOM40-1 (Translocase of outer membrane 40 kDa subunit homolog 1) [Cleaved into: Mitochondrial import receptor subunit TOM40-1, N-terminally processed],Translocase of the outer mitochondrial membrane 40 mitochondrial outer membrane translocase complex [GO:0005742]; pore complex [GO:0046930]; porin activity [GO:0015288]; protein channel activity [GO:0015266]; ion transport [GO:0006811]; protein import into mitochondrial matrix [GO:0030150],mitochondrial inner membrane [GO:0005743]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; pore complex [GO:0046930]; vacuolar membrane [GO:0005774]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; porin activity [GO:0015288]; protein channel activity [GO:0015266]; ion transport [GO:0006811]; protein import into mitochondrial matrix [GO:0030150]; protein targeting to mitochondrion [GO:0006626],mitochondrial outer membrane [GO:0005741]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2011887;,locus:2095355; AT1G50400,AT3G20000 Mitochondrial import receptor subunit Mitochondrial import receptor subunit TOM40, putative, expressed (Os03g0323800 protein) (cDNA clone:001-118-G11, full insert sequence) Q10M45 Q10M45_ORYSJ Os03g0323800 LOC_Os03g20750 Os03g0323800 OsJ_10671 OSNPB_030323800 ENOG411DPZE F4JN00 CSTR4_ARATH CMP-sialic acid transporter 4 (CMP-SA-Tr 4) (CMP-Sia-Tr 4) FUNCTION: Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein. {ECO:0000250, ECO:0000269|PubMed:19822337}. 38979 CMP-sialic acid transporter 4 (CMP-SA-Tr 4) (CMP-Sia-Tr 4) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; sialic acid transmembrane transporter activity [GO:0015136]; sugar:proton symporter activity [GO:0005351]; sialic acid transport [GO:0015739] locus:504955503; AT4G35335 transporter CMP-sialic acid transporter 2 (CMP-SA-Tr 2) (CMP-Sia-Tr 2) (CMP-sialic acid transporter-like protein 2) (OsCSTLP2) Q6ZL17 CSTR2_ORYSJ CSTLP2 Os07g0573700 LOC_Os07g38610 OJ1699_E05.21 OsJ_24829 FUNCTION: Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). May transport important nucleotide sugars such as CMP-Kdo (2-keto-3-deoxy-D-manno-octulosonic acid) in physiological conditions (PubMed:19822337). {ECO:0000250|UniProtKB:Q654D9, ECO:0000269|PubMed:19822337}. ENOG411DPZZ PILS2 Q9C999 PILS2_ARATH Protein PIN-LIKES 2 (Auxin efflux carrier-like protein 2) DISRUPTION PHENOTYPE: Increased root growth and lateral root initiation. {ECO:0000269|PubMed:22504182}. FUNCTION: Involved in cellular auxin homeostasis by regulating auxin metabolism. Regulates intracellular auxin accumulation at the endoplasmic reticulum and thus auxin availability for nuclear auxin signaling. {ECO:0000269|PubMed:22504182}. 49880 Protein PIN-LIKES 2 (Auxin efflux carrier-like protein 2) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin homeostasis [GO:0010252]; auxin-activated signaling pathway [GO:0009734]; lateral root formation [GO:0010311]; regulation of growth rate [GO:0040009]; response to auxin [GO:0009733] TISSUE SPECIFICITY: Expressed in seedlings, rosette and cauline leaves, flowers and siliques. {ECO:0000269|PubMed:22504182}. locus:2026366; AT1G71090 auxin efflux carrier Auxin efflux carrier protein-like (Os08g0191000 protein) Q6YZX7 Q6YZX7_ORYSJ Os08g0191000 Os08g0191000 OsJ_26308 OSNPB_080191000 P0610E02.30 ENOG411DPZX RPH1 Q9ZU82,F4IN59 Q9ZU82_ARATH,F4IN59_ARATH Expressed protein (Resistance to phytophthora 1) (Uncharacterized protein At2g48070),Resistance to phytophthora 1 Dwarf; Low chlorophyll levels (not visibly pale); Susceptible to Phytophthora brassicae-F. Mauch-2009 22094,22583 Expressed protein (Resistance to phytophthora 1) (Uncharacterized protein At2g48070),Resistance to phytophthora 1 integral component of membrane [GO:0016021],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; defense response to oomycetes [GO:0002229]; positive regulation of hydrogen peroxide biosynthetic process [GO:0010729] locus:2066374; AT2G48070 NA Os05g0404400 protein (cDNA clone:006-301-B09, full insert sequence) (cDNA clone:J013023J24, full insert sequence),Os05g0404400 protein (Fragment) Q6AUK1,A0A0P0WMD2 Q6AUK1_ORYSJ,A0A0P0WMD2_ORYSJ Os05g0404400 Os05g0404400 OJ1174_H11.3 OsJ_18497 OSJNBb0006J12.20 OSNPB_050404400,Os05g0404400 OSNPB_050404400 ENOG411DPZY Q9SCQ7 AN32_ARATH Acidic leucine-rich nuclear phosphoprotein 32-related protein (ANP32/acidic nuclear phosphoprotein-like protein) 49565 Acidic leucine-rich nuclear phosphoprotein 32-related protein (ANP32/acidic nuclear phosphoprotein-like protein) nucleus [GO:0005634]; histone binding [GO:0042393]; histone exchange [GO:0043486]; nucleocytoplasmic transport [GO:0006913]; nucleosome assembly [GO:0006334] locus:2101734; AT3G50690 acidic leucine-rich nuclear phosphoprotein 32-related Acidic leucine-rich nuclear phosphoprotein 32-related protein 1 (ANP32/acidic nuclear phosphoprotein-like protein 1) Q6YSF3 AN321_ORYSJ Os07g0607800 LOC_Os07g41694 OsJ_25065 OSJNBa0072I06.30 ENOG411EDHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DPZR EMB1144 P57720,F4I033,F4I032 AROC_ARATH,F4I033_ARATH,F4I032_ARATH Chorismate synthase, chloroplastic (EC 4.2.3.5) (5-enolpyruvylshikimate-3-phosphate phospholyase) (Protein EMBRYO DEFECTIVE 1144),Chorismate synthase (EC 4.2.3.5) Embryo defective; Gametophyte defective (inferred)-D. Meinke-2003 FUNCTION: Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway. {ECO:0000250}. PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 7/7.,PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 7/7. {ECO:0000256|RuleBase:RU000605}. ARA:AT1G48850-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 4.2.3.5 47318,41066 Chorismate synthase, chloroplastic (EC 4.2.3.5) (5-enolpyruvylshikimate-3-phosphate phospholyase) (Protein EMBRYO DEFECTIVE 1144),Chorismate synthase (EC 4.2.3.5) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plastid [GO:0009536]; chorismate synthase activity [GO:0004107]; FMN binding [GO:0010181]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423],chorismate synthase activity [GO:0004107]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423] locus:2028549; AT1G48850 chorismate synthase Chorismate synthase (EC 4.2.3.5) Q10NY1 Q10NY1_ORYSJ Os03g0254800 LOC_Os03g14990 Os03g0254800 OsJ_08438 OSNPB_030254800 ENOG411DPZS BTS Q8LPQ5 BTS_ARATH Zinc finger protein BRUTUS (Protein EMBRYO DEFECTIVE 2454) DISRUPTION PHENOTYPE: Embryonic lethal (PubMed:20675571, PubMed:25452667). Increased tolerance to iron deprivation (PubMed:20675571, PubMed:25794933, PubMed:27359166). Over-accumulation of iron ions in phloems, rosette leaves, flowers and seeds. In normal conditions, at the late reproductive stage, aborted siliques and abnormal necrotic lesions in cauline leaves (PubMed:25794933). Increased root elongation, rhizosphere acidification, and iron reductase activity under iron deficiency (PubMed:25452667, PubMed:27359166). {ECO:0000269|PubMed:20675571, ECO:0000269|PubMed:25452667, ECO:0000269|PubMed:25794933, ECO:0000269|PubMed:27359166, ECO:0000303|PubMed:20675571}. Embryo defective; Preglobular / Globular-D. Meinke-2002 FUNCTION: Essential protein (PubMed:20675571, PubMed:25452667). Negatively regulates the response to iron deficiency and thus contributes to iron homeostasis (PubMed:20675571, PubMed:25794933). Exhibits E3 ubiquitin-protein ligase activity in vitro (PubMed:24253678, PubMed:25452667). Plays a role in root growth, rhizosphere acidification, and iron reductase activity in response to iron deprivation (PubMed:25452667, PubMed:27359166). Facilitates 26S proteasome-mediated degradation of PYEL proteins in the absence of iron (PubMed:25452667). {ECO:0000269|PubMed:20675571, ECO:0000269|PubMed:24253678, ECO:0000269|PubMed:25452667, ECO:0000269|PubMed:25794933, ECO:0000269|PubMed:27359166, ECO:0000303|PubMed:20675571}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 141467 Zinc finger protein BRUTUS (Protein EMBRYO DEFECTIVE 2454) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; iron ion binding [GO:0005506]; ligase activity [GO:0016874]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; cellular response to iron ion starvation [GO:0010106]; multicellular organismal iron ion homeostasis [GO:0060586]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in cotyledons of seedlings, young leaves, developing and mature embryos, and other reproductive tissues including floral vasculature, funiculus, septum, and gynoecium valves. {ECO:0000269|PubMed:25452667}. locus:2089678; AT3G18290 CHY zinc finger Hemerythrin motif-containing really interesting new gene (RING)-and zinc-finger protein 1 (Os01g0689451 protein),Os01g0689451 protein,Os05g0551000 protein (Fragment) V9G2Z0,A0A0N7KDJ4,A0A0P0WPZ3 V9G2Z0_ORYSJ,A0A0N7KDJ4_ORYSJ,A0A0P0WPZ3_ORYSJ OsHRZ1 Os01g0689451 OSNPB_010689451,Os01g0689451 OSNPB_010689451,Os05g0551000 OSNPB_050551000 ENOG411DPZP ZIF1,ZIFL1,ZIFL2 Q8RWN2,Q94BZ1,Q3EAQ5,A0A1P8BEY5,A0A1I9LP99 ZIF1_ARATH,ZIFL1_ARATH,PTR36_ARATH,A0A1P8BEY5_ARATH,A0A1I9LP99_ARATH Protein ZINC INDUCED FACILITATOR 1,Protein ZINC INDUCED FACILITATOR-LIKE 1 (Protein ZIF-LIKE 1),Probable peptide/nitrate transporter At3g43790 (Protein ZINC INDUCED FACILITATOR-LIKE 2),Zinc induced facilitator 1,Zinc induced facilitator-like 2 DISRUPTION PHENOTYPE: Zinc sensitivity resulting in increased chlorosis and decreased shoot fresh weight and root length. Accumulation of high levels of zinc in shoots. {ECO:0000269|PubMed:17277087}.,DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions (PubMed:23524662). No visible phenotype when grown in presence of zinc (PubMed:17277087). Hypersensitivity to drought stress and auxin-related defects (PubMed:23524662). {ECO:0000269|PubMed:17277087, ECO:0000269|PubMed:23524662}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17277087}. FUNCTION: Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc. {ECO:0000269|PubMed:17277087}.,FUNCTION: Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export (PubMed:19440702). K(+) may be the physiological substrate of the transporter (PubMed:23524662). {ECO:0000269|PubMed:19440702, ECO:0000269|PubMed:23524662}.; FUNCTION: Isoform 1: Modulates root auxin-related processes. Involved in auxin efflux and acts as a positive regulator of shootward transport at the root apex. May mediate proton efflux from the vacuolar compartment. {ECO:0000269|PubMed:23524662}.; FUNCTION: Isoform 3: Mediates drought stress tolerance by regulating stomatal closure. {ECO:0000269|PubMed:23524662}. MISCELLANEOUS: Overexpression of ZIF1 confers increased zinc tolerance and causes interveinal leaf chlorosis.,MISCELLANEOUS: Heterologous expression of ZIFL1 in yeast leads to increased resistance to 2,4-dichlorophenoxyacetic acid (2,4-D), indole-3-acetic acid (IAA), aluminum and thallium. Not involved in zinc stress resistance. 53179,52299,53275,48185,44845 Protein ZINC INDUCED FACILITATOR 1,Protein ZINC INDUCED FACILITATOR-LIKE 1 (Protein ZIF-LIKE 1),Probable peptide/nitrate transporter At3g43790 (Protein ZINC INDUCED FACILITATOR-LIKE 2),Zinc induced facilitator 1,Zinc induced facilitator-like 2 integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; potassium ion antiporter activity [GO:0022821]; regulation of stomatal closure [GO:0090333]; response to nematode [GO:0009624]; response to zinc ion [GO:0010043]; zinc ion homeostasis [GO:0055069],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; potassium ion antiporter activity [GO:0022821]; basipetal auxin transport [GO:0010540]; gravitropism [GO:0009630]; regulation of stomatal closure [GO:0090333]; response to karrikin [GO:0080167]; response to water deprivation [GO:0009414]; root development [GO:0048364],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; potassium ion antiporter activity [GO:0022821]; regulation of stomatal closure [GO:0090333]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:23524662}. TISSUE SPECIFICITY: Strongly expressed in developing leaves, differentiating zones of root tips and sepals of developing flowers. Restricted to vascular tissues in older leaves, mature roots, flowers, anthers and filaments. Not expressed in developing anthers. {ECO:0000269|PubMed:17277087}.,TISSUE SPECIFICITY: Predominantly expressed in roots and stomatal guard cells. Detected in anther stamen filaments and shoot apical meristem. In the mature portion of roots, restricted to the cortex. At the root tip, highly expressed in both the cortical and epidermal cell layers of the apical meristem and the transition zone, while absent from the quiescent center or the columella cells. Not detected in lateral root primordia. {ECO:0000269|PubMed:23524662}. locus:2173254;,locus:2177105;,locus:2101109; AT5G13740,AT5G13750,AT3G43790 Protein ZINC INDUCED FACILITATOR-LIKE Os12g0133100 protein (Transporter, putative, expressed),Major facilitator superfamily antiporter, putative, expressed (Os11g0135000 protein),Os01g0268100 protein (Putative major facilitator superfamily antiporter),Major facilitator superfamily antiporter, putative, expressed (Os11g0134900 protein),Os11g0135900 protein (Transporter, putative, expressed),Major facilitator superfamily antiporter, putative, expressed (Os12g0132800 protein),Os07g0180700 protein,Os12g0133100 protein (Fragment),Os11g0135900 protein,Os11g0135000 protein (Fragment),Os11g0136400 protein,Os12g0133300 protein,Os12g0132500 protein H2KWZ0,Q2RAW4,Q5NBL6,Q2RAW8,Q2RAV7,Q2QY48,Q0D869,A0A0P0Y6N2,A0A0P0XYT8,A0A0P0XYV2,A0A0P0XYV7,A0A0P0Y6J8,A0A0P0Y6P8 H2KWZ0_ORYSJ,Q2RAW4_ORYSJ,Q5NBL6_ORYSJ,Q2RAW8_ORYSJ,Q2RAV7_ORYSJ,Q2QY48_ORYSJ,Q0D869_ORYSJ,A0A0P0Y6N2_ORYSJ,A0A0P0XYT8_ORYSJ,A0A0P0XYV2_ORYSJ,A0A0P0XYV7_ORYSJ,A0A0P0Y6J8_ORYSJ,A0A0P0Y6P8_ORYSJ Os12g0133100 LOC_Os12g03899 OSNPB_120133100,Os11g0135000 LOC_Os11g04030 Os11g0135000 OsJ_32858 OSNPB_110135000,Os01g0268100 OSNPB_010268100 P0011D01.24,Os11g0134900 LOC_Os11g04020 Os11g0134900 OsJ_32857 OSNPB_110134900,Os11g0135900 LOC_Os11g04104 Os11g0135900 OsJ_32870 OSNPB_110135900,LOC_Os12g03860 Os12g0132800 OsJ_35134 OSNPB_120132800,Os07g0180700 Os07g0180700 OSNPB_070180700,Os12g0133100 OSNPB_120133100,Os11g0135900 OSNPB_110135900,Os11g0135000 OSNPB_110135000,Os11g0136400 OSNPB_110136400,Os12g0133300 OSNPB_120133300,Os12g0132500 OSNPB_120132500 ENOG411EDHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411DPZV Q9LQZ4 Q9LQZ4_ARATH At1g75700 (F10A5.27) (Putative transcription initiation factor) (TFIIF-beta 2) (Transcription initiation factor IIF, beta subunit) R-ATH-113418;R-ATH-674695;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 29711 At1g75700 (F10A5.27) (Putative transcription initiation factor) (TFIIF-beta 2) (Transcription initiation factor IIF, beta subunit) mitochondrion [GO:0005739]; transcription factor TFIIF complex [GO:0005674]; catalytic activity [GO:0003824]; transcription factor activity, core RNA polymerase II binding [GO:0000991]; translation initiation factor activity [GO:0003743]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; positive regulation of transcription initiation from RNA polymerase II promoter [GO:0060261]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2005674; AT1G75510 Transcription initiation factor IIF Os01g0772200 protein,Os05g0509900 protein (Putative transcription initiation factor) (cDNA clone:J023147N17, full insert sequence),Os01g0772200 protein (Putative transcription initiation factor IIF beta subunit) C7IWS5,Q6L4V9,Q5N8X8 C7IWS5_ORYSJ,Q6L4V9_ORYSJ,Q5N8X8_ORYSJ Os01g0772200 Os01g0772200 OSNPB_010772200,Os05g0509900 Os05g0509900 OsJ_19152 OSJNBb0108E17.21 OSNPB_050509900,P0695H10.13-1 Os01g0772200 OSNPB_010772200 ENOG411DPZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LURP-one-related 8 Os05g0484800 protein (cDNA clone:J023118G11, full insert sequence) Q75J78 Q75J78_ORYSJ Os05g0484800 Os05g0484800 OSJNBb0099O15.8 OSNPB_050484800 ENOG411DPZT CXE8 O64640 CXE8_ARATH Probable carboxylesterase 8 (AtCXE8) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT2G45600-MONOMER; 3.1.1.1 36424 Probable carboxylesterase 8 (AtCXE8) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2043644; AT2G45600 alpha/beta hydrolase fold Os08g0547800 protein (Putative pepper esterase) (cDNA clone:001-206-F06, full insert sequence),Os03g0252100 protein (Fragment) Q6YSZ8,A0A0P0VVI4 Q6YSZ8_ORYSJ,A0A0P0VVI4_ORYSJ Os08g0547800 OJ1112_E06.7 OSNPB_080547800 P0544G09.23,Os03g0252100 OSNPB_030252100 ENOG411DPZU Q9LHS5,F4J6A8 Q9LHS5_ARATH,F4J6A8_ARATH Cell division related protein-like (DnaJ and myb-like DNA-binding domain-containing protein),DnaJ and Myb-like DNA-binding domain-containing protein R-ATH-3371453; 75633,73990 Cell division related protein-like (DnaJ and myb-like DNA-binding domain-containing protein),DnaJ and Myb-like DNA-binding domain-containing protein DNA binding [GO:0003677]; histone binding [GO:0042393]; ubiquitin binding [GO:0043130]; cell division [GO:0051301]; chromatin silencing [GO:0006342]; embryo development ending in seed dormancy [GO:0009793]; leaf development [GO:0048366]; regulation of flower development [GO:0009909]; shoot apical meristem development [GO:1902182],DNA binding [GO:0003677]; chromatin silencing [GO:0006342]; embryo development ending in seed dormancy [GO:0009793]; leaf development [GO:0048366]; regulation of flower development [GO:0009909]; shoot apical meristem development [GO:1902182] locus:2152835;,locus:2080712; AT5G06110,AT3G11450 dnaJ homolog subfamily C member Os04g0377932 protein A0A0P0W9B8 A0A0P0W9B8_ORYSJ Os04g0377932 OSNPB_040377932 ENOG411DPZ8 MPPA2 Q9ZU25,O04308,A8MQE5 MPPA1_ARATH,MPPA2_ARATH,A8MQE5_ARATH Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial (EC 3.4.24.64) (Alpha-MPP 1),Probable mitochondrial-processing peptidase subunit alpha-2, chloroplastic/mitochondrial (EC 3.4.24.64) (Alpha-MPP 2),Insulinase (Peptidase family M16) protein FUNCTION: Cleaves presequences (transit peptides) from mitochondrial protein precursors. {ECO:0000250}. ARA:AT1G51980-MONOMER;,ARA:AT3G16480-MONOMER;MetaCyc:AT3G16480-MONOMER; 3.4.24.64 54402,54053,48615 Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial (EC 3.4.24.64) (Alpha-MPP 1),Probable mitochondrial-processing peptidase subunit alpha-2, chloroplastic/mitochondrial (EC 3.4.24.64) (Alpha-MPP 2),Insulinase (Peptidase family M16) protein chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; metalloendopeptidase activity [GO:0004222]; oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270]; protein processing involved in protein targeting to mitochondrion [GO:0006627]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrial matrix [GO:0005759]; mitochondrial outer membrane [GO:0005741]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; metalloendopeptidase activity [GO:0004222]; oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270]; protein processing involved in protein targeting to mitochondrion [GO:0006627],metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222] locus:2034096;,locus:2088309; AT1G51980,AT3G16480 mitochondrial-processing peptidase subunit Os01g0191500 protein (Putative mitochondrial processing peptidase) (cDNA clone:J013073N24, full insert sequence),Os05g0524300 protein (Fragment),Mitochondrial processing peptidase (Os01g0739000 protein) (Putative mitochondrial processing peptidase) (cDNA clone:J023023N17, full insert sequence) (cDNA clone:J033067L12, full insert sequence) Q5SNJ4,Q0DGM0,Q5JNL6 Q5SNJ4_ORYSJ,Q0DGM0_ORYSJ,Q5JNL6_ORYSJ Os01g0191500 Os01g0191500 OsJ_00704 OSNPB_010191500 P0710E05.34,Os05g0524300 Os05g0524300 OSNPB_050524300,Os01g0739000 Os01g0739000 OSNPB_010739000 P0638D12.13 ENOG411DPZ9 Q8L634,F4HRH6,A0A1P8AUH6 Q8L634_ARATH,F4HRH6_ARATH,A0A1P8AUH6_ARATH AT3G14830 protein (Epstein-barr nuclear antigen) (Uncharacterized protein At3g14830),Epstein-barr nuclear antigen 52531,50341,45997 AT3G14830 protein (Epstein-barr nuclear antigen) (Uncharacterized protein At3g14830),Epstein-barr nuclear antigen locus:2099397;,locus:2203713; AT3G14830,AT1G53450 NA NA NA NA NA NA NA NA ENOG411DPZ2 HVA22K Q6NLY8 HA22K_ARATH HVA22-like protein k (AtHVA22k) 22153 HVA22-like protein k (AtHVA22k) locus:2115315; AT4G36720 HVA22-like protein HVA22-like protein A3BLA8 A3BLA8_ORYSJ Os07g0568400 OsJ_24793 OSNPB_070568400 ENOG411DPZ0 Q8W486 Y1491_ARATH Uncharacterized protein At1g04910 59043 Uncharacterized protein At1g04910 cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2010657; AT1G04910 DUF246 domain-containing protein Os11g0481200 protein (Plant protein family protein, expressed) (cDNA clone:J013149N04, full insert sequence),Os12g0425600 protein (Fragment),Os06g0502800 protein (Fragment) Q2R4A8,Q0INN2,A0A0P0WWZ4 Q2R4A8_ORYSJ,Q0INN2_ORYSJ,A0A0P0WWZ4_ORYSJ Os11g0481200 LOC_Os11g29120 Os11g0481200 OSNPB_110481200,Os12g0425600 Os12g0425600 OSNPB_120425600,Os06g0502800 OSNPB_060502800 ENOG411DPZ6 RH46,RH14,RH40 Q9LYJ9,Q8H136,Q9SQV1,A0A1P8BDA9,A0A1P8BDA2,A0A1P8BDA3,A0A1P8BDE7,F4K6V1,A0A1I9LT69 RH46_ARATH,RH14_ARATH,RH40_ARATH,A0A1P8BDA9_ARATH,A0A1P8BDA2_ARATH,A0A1P8BDA3_ARATH,A0A1P8BDE7_ARATH,F4K6V1_ARATH,A0A1I9LT69_ARATH DEAD-box ATP-dependent RNA helicase 46 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 14 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 40 (EC 3.6.4.13),DEAD box RNA helicase family protein FUNCTION: ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. {ECO:0000250}. 3.6.4.13 69196,67728,119556,55475,69109,70109,54509,76257,86492 DEAD-box ATP-dependent RNA helicase 46 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 14 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 40 (EC 3.6.4.13),DEAD box RNA helicase family protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; ATPase activity [GO:0016887]; RNA binding [GO:0003723]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in flowers and roots. {ECO:0000269|PubMed:17168887, ECO:0000269|PubMed:9592148}. locus:2084178;,locus:2081061;,locus:2222617; AT5G14610,AT3G01540,AT3G06480 ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 14 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 40 (EC 3.6.4.13),Os01g0549400 protein (Fragment),Os11g0689400 protein (Fragment),Os01g0549400 protein Q5VQL1,Q5JKF2,A0A0P0V3W4,A0A0P0Y5Y3,A0A0P0V3W9 RH14_ORYSJ,RH40_ORYSJ,A0A0P0V3W4_ORYSJ,A0A0P0Y5Y3_ORYSJ,A0A0P0V3W9_ORYSJ Os01g0172200 LOC_Os01g07740 P0583G08.30-1 P0583G08.30-2,Os01g0549400 LOC_Os01g36860 B1156H12.12-1 B1156H12.12-2 OsJ_02174,Os01g0549400 OSNPB_010549400,Os11g0689400 OSNPB_110689400 FUNCTION: ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. {ECO:0000250}. ENOG411DPZ7 NDL2,NDL3 Q9ASU8,A8MRP5 Q9ASU8_ARATH,A8MRP5_ARATH AT5g11790/T22P22_180 (N-MYC downregulated-like 2),N-MYC downregulated-like 3 FUNCTION: Involved in a signaling pathway that modulates root auxin transport and auxin gradients. Acts partially by positively regulating the auxin carrier PIN2 and AUX1 (PubMed:19948787). Acts, together with GB1 as positive regulator of meristem initiation and branching. GB1 and NDL2 positively regulate basipetal inflorescence auxin transport and modulate MAX2 expression in shoots, which regulates organ and lateral meristem formation by the establishment and maintenance of auxin gradients (PubMed:24223735). {ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:24223735}. 38179,36775 AT5g11790/T22P22_180 (N-MYC downregulated-like 2),N-MYC downregulated-like 3 integral component of membrane [GO:0016021] locus:2181905; AT5G11790,AT2G19620 Pollen-specific protein NA NA NA NA NA NA NA ENOG411DPZ4 SMC3,TTN7 Q56YN8,A0A1P8AZX9 SMC3_ARATH,A0A1P8AZX9_ARATH Structural maintenance of chromosomes protein 3 (SMC protein 3) (SMC-3) (Chromosome segregation protein SMC-3) (Cohesin complex subunit SMC-3) (Protein TITAN7),Structural maintenance of chromosomes (SMC) family protein DISRUPTION PHENOTYPE: Altered chromosome dynamics and cell division during seed development, leading to aberrant mitoses and giant polyploid nuclei in endosperm as well as arrested embryos with a few small cells. {ECO:0000269|PubMed:11788751, ECO:0000269|PubMed:11846874, ECO:0000269|PubMed:19533160}. Embryo defective; Preglobular; Enlarged endosperm nuclei-D. Meinke-2002 FUNCTION: Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement (By similarity). Essential protein plant viability. Required for chromosome segregation (e.g. sister chromatid alignment) and cell division during embryogenesis. {ECO:0000250, ECO:0000269|PubMed:11788751, ECO:0000269|PubMed:11846874, ECO:0000269|PubMed:19533160}. R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; Oocyte meiosis (04114),Meiosis - yeast (04113),Cell cycle - yeast (04111),Cell cycle (04110) 139371,124522 Structural maintenance of chromosomes protein 3 (SMC protein 3) (SMC-3) (Chromosome segregation protein SMC-3) (Cohesin complex subunit SMC-3) (Protein TITAN7),Structural maintenance of chromosomes (SMC) family protein chromatin [GO:0000785]; chromosome, centromeric region [GO:0000775]; cohesin complex [GO:0008278]; cytoplasm [GO:0005737]; nuclear matrix [GO:0016363]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; spindle [GO:0005819]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; DNA repair [GO:0006281]; meiotic cell cycle [GO:0051321]; mitotic sister chromatid cohesion [GO:0007064]; sister chromatid cohesion [GO:0007062],cohesin complex [GO:0008278]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; DNA repair [GO:0006281]; mitotic sister chromatid cohesion [GO:0007064] TISSUE SPECIFICITY: Mostly expressed in flower buds and leaves, and, to a lower extent, in roots and stems. {ECO:0000269|PubMed:15972315}. locus:2045159; AT2G27170 structural maintenance of chromosomes protein NA NA NA NA NA NA NA ENOG411DV36 O22764 O22764_ARATH Protein kinase superfamily protein (Putative serine/threonine protein kinase) 54735 Protein kinase superfamily protein (Putative serine/threonine protein kinase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; circadian rhythm [GO:0007623]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468] locus:2132353; AT4G02630 serine threonine-protein kinase Os04g0430000 protein (Fragment),Os02g0549200 protein (Putative receptor protein kinase PERK1),Os05g0436100 protein Q0JD58,Q6Z107,A0A0P0WMV7 Q0JD58_ORYSJ,Q6Z107_ORYSJ,A0A0P0WMV7_ORYSJ Os04g0430000 Os04g0430000 OSNPB_040430000,Os02g0549200 OsJ_07086 OSJNBa0040I22.12 OSNPB_020549200,Os05g0436100 OSNPB_050436100 ENOG411DV3P PID O64682 PID_ARATH Protein kinase PINOID (EC 2.7.11.1) (Protein kinase ABRUPTUS) DISRUPTION PHENOTYPE: Pleiotropic defects in the development of floral organs, cotyledons and leaves, especially in the number of organs produced. Loss of function induces an apical-to-basal shift in PIN1 polar targeting at the inflorescence apex, accompanied by defective organogenesis. {ECO:0000269|PubMed:10693763, ECO:0000269|PubMed:11641228, ECO:0000269|PubMed:15514156, ECO:0000269|PubMed:19363095, ECO:0000269|Ref.4}. Lacks cotyledons and develops an altered shoot apex topology. SAM formation is not suppressed. Significant reduction of sepals and sterility because of a reduction in number of gynoecia. Position of the polar auxin transporter PIN1 is reversed in the embryo apex resulting in altered polar auxin transport. Embryo defective; Abnormal cotyledon number; Fused cotyledons; Inflorescence terminates prematurely in a pin-like structure; Abnormal floral morphology-D. Weigel-2000 FUNCTION: Serine/threonine-protein kinase involved in the regulation of auxin signaling. Acts as a positive regulator of cellular auxin efflux and regulates organ development by enhancing polar auxin transport. Phosphorylates conserved serine residues in the PIN auxin efflux carriers. Phosphorylation of PIN proteins is required and sufficient for apical-basal PIN polarity that enables directional intercellular auxin fluxes, which mediate differential growth, tissue patterning and organogenesis. Acts in association with PIN1 to control the establishment of bilateral symmetry and promotion of cotyledon outgrowth. Regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport. Required for polarization of PIN3-dependent auxin transport for hypocotyl gravitropic response. The protein kinase activity of PID is essential for its auxin efflux regulatory function. PID kinase and PP2A phosphatase activities antagonistically regulate phosphorylation of PIN proteins, affecting PIN sorting. {ECO:0000269|PubMed:10693763, ECO:0000269|PubMed:11641228, ECO:0000269|PubMed:15371311, ECO:0000269|PubMed:15514156, ECO:0000269|PubMed:16107478, ECO:0000269|PubMed:16601102, ECO:0000269|PubMed:16731587, ECO:0000269|PubMed:17889649, ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:19363095, ECO:0000269|PubMed:20040538, ECO:0000269|PubMed:20080776, ECO:0000269|PubMed:20407025, ECO:0000269|PubMed:21423279, ECO:0000269|PubMed:21569134}. MISCELLANEOUS: Plants overexpressing PID are small with dark green, curled leaves, with vegetative and floral organs defects and reduced apical dominance and internode elongation. Specific overexpression of PID in root hair cells suppresses root hair development. Over-expression of PID induces a basal-to-apical shift in PIN2 and PIN4 localization, resulting in the loss of auxin gradients and strong defects in embryo and seedling roots. 2.7.11.1 49271 Protein kinase PINOID (EC 2.7.11.1) (Protein kinase ABRUPTUS) cell surface [GO:0009986]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; cotyledon development [GO:0048825]; intracellular signal transduction [GO:0035556]; phyllome development [GO:0048827]; positive gravitropism [GO:0009958]; response to auxin [GO:0009733]; response to karrikin [GO:0080167]; root hair elongation [GO:0048767]; root hair initiation [GO:0048766] DEVELOPMENTAL STAGE: Expressed during embryogenesis at the globular stage on the apical flanks of the embryo, where the cotyledons are subsequently formed. Expression in the cotyledons persists at the heart stage until the mid-torpedo stage. At the bent-cotyledon stage, expressed weakly in the apical meristem. At the early phase of flowering, expressed in discrete groups of cells on the flanks of the apex initially marking the floral anlagen. During primordia differentiation, expressed in the adaxial portion of the primordia. In developing flowers, transiently expressed in nascent floral organs and then decreases as floral organs mature. {ECO:0000269|PubMed:10693763}. TISSUE SPECIFICITY: Expressed in root hair cells, shoot xylem parenchyma cells and endodermis around the vasculature. Expressed in anther primordia, vasculature of the growing flower stalk, young pedicels and bracts and developing sepals, but not in petals. In pistils, transiently expressed in the vasculature of the style and the septum, and in the integuments and funiculus of the developing ovule. {ECO:0000269|PubMed:11641228, ECO:0000269|PubMed:16731587}. locus:2062268; AT2G34650 protein kinase PINOID-like Protein kinase PINOID (OsPID) (EC 2.7.11.1),Kinase domain containing protein (Os03g0642200 protein) (Os03g0642300 protein) (Protein kinase PINOID, putative, expressed),Os10g0211900 protein (Fragment),Os03g0592900 protein Q2QM77,Q6ASU0,A0A0P0XSM0,A0A0P0W0P1 PID_ORYSJ,Q6ASU0_ORYSJ,A0A0P0XSM0_ORYSJ,A0A0P0W0P1_ORYSJ PID Os12g0614600 LOC_Os12g42020,Os03g0642300 LOC_Os03g44020 Os03g0642200 B1394A07.1 OSJNBa0038E17.2 OSNPB_030642300,Os10g0211900 OSNPB_100211900,Os03g0592900 OSNPB_030592900 FUNCTION: Serine/threonine-protein kinase involved in the regulation of auxin signaling. May control polar auxin transport and probably plays a role in the pattern formation and organogenesis in the rice shoot. {ECO:0000269|PubMed:17303594}. MISCELLANEOUS: Plants overexpressing PID show variety of development abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism. ENOG411E8CB MUK11.3 Q84W11,F4JXP8 Q84W11_ARATH,F4JXP8_ARATH At5g04750 (F1F0-ATPase inhibitor protein) (F1F0-ATPase inhibitor-like protein),F1F0-ATPase inhibitor protein 10703,8514 At5g04750 (F1F0-ATPase inhibitor protein) (F1F0-ATPase inhibitor-like protein),F1F0-ATPase inhibitor protein mitochondrion [GO:0005739]; ATPase inhibitor activity [GO:0042030]; negative regulation of ATPase activity [GO:0032780] locus:2175468; AT5G04750 Mitochondrial ATPase inhibitor IATP NA NA NA NA NA NA NA ENOG411E8CG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0175200 protein (cDNA clone:001-015-F08, full insert sequence) Q8H571 Q8H571_ORYSJ OJ1656_E11.132 Os07g0175200 OsJ_23286 OSNPB_070175200 ENOG411E8CJ AGP14 Q9LVC0 AGP14_ARATH Arabinogalactan peptide 14 (AG-peptide 14) FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death (Probable). Involved in the regulation of root hair elongation (PubMed:21248074). {ECO:0000269|PubMed:21248074, ECO:0000305}. 6363 Arabinogalactan peptide 14 (AG-peptide 14) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; root hair elongation [GO:0048767] locus:2167126; AT5G56540 NA NA NA NA NA NA NA NA ENOG411E8CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0766600 protein) (cDNA clone:001-122-B04, full insert sequence) (cDNA clone:J023133G21, full insert sequence) (mRNA, relating to carbonate stress) Q9AYP3 Q9AYP3_ORYSJ OSJNBa0079B15.10 LOC_Os03g55770 Os03g0766600 OsJ_12714 OSNPB_030766600 ENOG411E8CH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0584500 protein,Os06g0335600 protein,Os06g0337500 protein,Os06g0335775 protein Q5ZAH9,Q5Z748,B9FT34,A0A0P0WW51 Q5ZAH9_ORYSJ,Q5Z748_ORYSJ,B9FT34_ORYSJ,A0A0P0WW51_ORYSJ Os01g0584500 OsJ_02374 OSJNBb0024F06.17 OSNPB_010584500 P0712E02.4,Os06g0335600 OsJ_21216 OSJNBa0012F14.31 OSNPB_060335600,Os06g0337500 OsJ_21226 OSNPB_060337500,Os06g0335775 OSNPB_060335775 ENOG411E8CI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0132300 protein (Fragment) A0A0P0WSJ4 A0A0P0WSJ4_ORYSJ Os06g0132300 OSNPB_060132300 ENOG411E8CM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E8CS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquinol-cytochrome c reductase complex 6.7 kDa NA NA NA NA NA NA NA ENOG411E8CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8CV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0575600 protein,Os04g0479900 protein,Os09g0502700 protein Q6F372,A0A0P0WBH9,A0A0P0XPZ4 Q6F372_ORYSJ,A0A0P0WBH9_ORYSJ,A0A0P0XPZ4_ORYSJ Os05g0575600 OJ1268_B08.17 OsJ_19643 OSNPB_050575600,Os04g0479900 OSNPB_040479900,Os09g0502700 OSNPB_090502700 ENOG411E8CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os07g0655800 protein A0A0P0X9X1 A0A0P0X9X1_ORYSJ Os07g0655800 OSNPB_070655800 ENOG411E8CT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8CU F4K3N8 F4K3N8_ARATH Uncharacterized protein 8356 Uncharacterized protein locus:6530298251; AT5G67265 NA NA NA NA NA NA NA NA ENOG411E8CZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E8CX SPH3,SPH4,T10K17.50 Q9FMQ4,F4JZG1,Q9M2R3 SPH3_ARATH,SPH4_ARATH,Q9M2R3_ARATH S-protein homolog 3,S-protein homolog 4,Plant self-incompatibility protein S1 family (Self-incompatibility protein-like protein) (Uncharacterized protein T10K17.50) 17218,17321,18260 S-protein homolog 3,S-protein homolog 4,Plant self-incompatibility protein S1 family (Self-incompatibility protein-like protein) (Uncharacterized protein T10K17.50) extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:2176982;,locus:2176987;,locus:2095788; AT5G12060,AT5G12070,AT3G57840 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411E8CY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0607000 protein (cDNA clone:001-102-A11, full insert sequence) Q5ZBN5 Q5ZBN5_ORYSJ Os01g0607000 Os01g0607000 OSJNBa0090K04.11 OSNPB_010607000 P0704D04.19 ENOG411E9VT Q9LYN6,Q9SIZ4,F4IH11 Y3565_ARATH,Y2027_ARATH,F4IH11_ARATH Probable inactive receptor-like protein kinase At3g56050,Inactive receptor-like serine/threonine-protein kinase At2g40270,Protein kinase family protein 55231,54176,53332 Probable inactive receptor-like protein kinase At3g56050,Inactive receptor-like serine/threonine-protein kinase At2g40270,Protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2078436;,locus:2063146; AT3G56050,AT2G40270 kinase family NA NA NA NA NA NA NA ENOG411E9VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fructose-1-6-bisphosphatase NA NA NA NA NA NA NA ENOG411E8C2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8C3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8C0 Q94EW8,Q3EBC0 Q94EW8_ARATH,Q3EBC0_ARATH AT5g26741 (At5g26741/At5g26741),Uncharacterized protein 12117,6667 AT5g26741 (At5g26741/At5g26741),Uncharacterized protein locus:505006639;,locus:1006230179; AT5G26731,AT3G05937 NA NA NA NA NA NA NA NA ENOG411E8C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8C6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Translocon-associated protein beta (TRAPB) NA NA NA NA NA NA NA ENOG411E8C7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ring finger protein NA NA NA NA NA NA NA ENOG411E8C5 EDA41,T19K24.4 Q9FHB5,Q9CA04,Q9ZVP2,O48575,A0A1P8BCK1 FDL42_ARATH,FDL45_ARATH,FBD34_ARATH,O48575_ARATH,A0A1P8BCK1_ARATH Putative F-box/FBD/LRR-repeat protein At5g52460 (Protein EMBRYO SAC DEVELOPMENT ARREST 41),Putative F-box/FBD/LRR-repeat protein At3g49480,Putative FBD-associated F-box protein At1g05080,Gb|AAC79136.1 (Protein with RNI-like/FBD-like domain) (T19K24.4 protein),FBD, F-box and Leucine Rich Repeat domains containing protein (Fragment) 43123,52279,49884,37652,32525 Putative F-box/FBD/LRR-repeat protein At5g52460 (Protein EMBRYO SAC DEVELOPMENT ARREST 41),Putative F-box/FBD/LRR-repeat protein At3g49480,Putative FBD-associated F-box protein At1g05080,Gb|AAC79136.1 (Protein with RNI-like/FBD-like domain) (T19K24.4 protein),FBD, F-box and Leucine Rich Repeat domains containing protein (Fragment) locus:2205533;,locus:2155297; AT5G52460,AT3G49480,AT1G05080,AT5G44850 AT1G05080 (E 6e-087) F-box family protein NA NA NA NA NA NA NA ENOG411E8C8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cyclin-dependent kinase inhibitor Cyclin-dependent kinase inhibitor 6 (KIP-related protein 6) Q67J15 KRP6_ORYSJ KRP6 Os09g0459900 LOC_Os09g28580 B1045B05.40-1 OSJNBa0054F02.18-1 ENOG411E8C9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Expressed protein (Os03g0676400 protein) (VQ motif family protein, expressed) (cDNA clone:002-156-E12, full insert sequence) Q9FRF4 Q9FRF4_ORYSJ Os03g47280 LOC_Os03g47280 Os03g0676400 OSNPB_030676400 ENOG411E9VE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine-rich receptor-like protein kinase Os11g0608300 protein (cDNA, clone: J100045H04, full insert sequence),Os11g0607900 protein,Os04g0369000 protein (Fragment),Os11g0274100 protein (Fragment),Os11g0608700 protein,Os11g0609500 protein,Os04g0369066 protein B7FA48,B9G0A1,Q0JDW4,A0A0P0Y121,A0A0P0Y482,A0A0P0Y4D1,A0A0P0W9U0 B7FA48_ORYSJ,B9G0A1_ORYSJ,Q0JDW4_ORYSJ,A0A0P0Y121_ORYSJ,A0A0P0Y482_ORYSJ,A0A0P0Y4D1_ORYSJ,A0A0P0W9U0_ORYSJ Os11g0608300 OSNPB_110608300,Os11g0607900 OsJ_26865 OSNPB_110607900,Os04g0369000 Os04g0369000 OSNPB_040369000,Os11g0274100 OSNPB_110274100,Os11g0608700 OSNPB_110608700,Os11g0609500 OSNPB_110609500,Os04g0369066 OSNPB_040369066 ENOG411DPW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411DPW6 F4I2L0 F4I2L0_ARATH tRNA pseudouridine synthase (EC 5.4.99.-) 5.4.99.- 41545 tRNA pseudouridine synthase (EC 5.4.99.-) pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119] locus:2024397; AT1G09800 tRNA pseudouridine synthase tRNA pseudouridine synthase (EC 5.4.99.-),Os12g0194800 protein Q2QWH9,A0A0P0Y7U4 Q2QWH9_ORYSJ,A0A0P0Y7U4_ORYSJ LOC_Os12g09290 Os12g0194800 OsJ_35509 OSNPB_120194800,Os12g0194800 OSNPB_120194800 ENOG411DPWU SPL12,SPL14,SPL16,SPL1 Q9S7P5,Q8RY95,Q700C2,Q9SMX9,A0A1P8B267,A0A1P8AUS5,A0A1P8AUS9 SPL12_ARATH,SPL14_ARATH,SPL16_ARATH,SPL1_ARATH,A0A1P8B267_ARATH,A0A1P8AUS5_ARATH,A0A1P8AUS9_ARATH Squamosa promoter-binding-like protein 12,Squamosa promoter-binding-like protein 14 (Protein FUMONISIN B1-RESISTANT 6) (SPL1-related protein 2),Squamosa promoter-binding-like protein 16 (SPL1-related protein 3),Squamosa promoter-binding-like protein 1,Squamosa promoter binding protein-like 1,Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein DISRUPTION PHENOTYPE: Plants display elongated petioles and enhanced leaf margin serration and are able to germinate and develop in the presence of the programmed cell death (PCD)-inducing fungal toxin fumonisin B1 (FB1). {ECO:0000269|PubMed:15703061}. Mutants are resistant to fumonisin B1. In the absence of FB1 the plants have elongated petioles and enhanced leaf margin serration. Plants appear to undergo early vegetative phase change. Elongated petioles; Serrated leaf margins; Late flowering-J. Stiers-2005 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.,FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.,FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.,FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. 104142,114814,109849,98460,84214,77259,76672 Squamosa promoter-binding-like protein 12,Squamosa promoter-binding-like protein 14 (Protein FUMONISIN B1-RESISTANT 6) (SPL1-related protein 2),Squamosa promoter-binding-like protein 16 (SPL1-related protein 3),Squamosa promoter-binding-like protein 1,Squamosa promoter binding protein-like 1,Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872] DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269|PubMed:10524240}.,DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}. locus:2101402;,locus:2037355;,locus:2011706;,locus:2041329; AT3G60030,AT1G20980,AT1G76580,AT2G47070 Squamosa promoter-binding-like protein Squamosa promoter-binding-like protein 15,Squamosa promoter-binding-like protein 6,Os08g0513700 protein (Fragment),Os03g0833300 protein (Fragment) Q6Z8M8,Q75LH6,A0A0P0XHY5,A0A0P0W566,A0A0P0W540,A0A0P0W5D7 SPL15_ORYSJ,SPL6_ORYSJ,A0A0P0XHY5_ORYSJ,A0A0P0W566_ORYSJ,A0A0P0W540_ORYSJ,A0A0P0W5D7_ORYSJ SPL15 Os08g0513700 LOC_Os08g40260 OsJ_026806 P0711H09.27,SPL6 Os03g0833300 LOC_Os03g61760 OsJ_13251 OSJNBa0078D06.37 OSJNBa0096I06.31,Os08g0513700 OSNPB_080513700,Os03g0833300 OSNPB_030833300 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. ENOG411DPWP PAP1,PAP2 O81439,O49629 PAP1_ARATH,PAP2_ARATH Probable plastid-lipid-associated protein 1, chloroplastic (AtPap1) (Fibrillin-1a) (Plastoglobulin 35) (AtPGL35),Probable plastid-lipid-associated protein 2, chloroplastic (AtPap2) (Fibrillin-1b) FUNCTION: Probably involved in light/cold stress-related jasmonate (JA) biosynthesis. Contributes to the protection of photosystem II (PSII) against light stress. {ECO:0000269|PubMed:16571665, ECO:0000269|PubMed:19906042}.,FUNCTION: Probably involved in light/cold stress-related jasmonate (JA) biosynthesis. {ECO:0000269|PubMed:19906042}. MISCELLANEOUS: Simultaneous down-regulation of PAP1, PAP2 and PAP3 leads to impaired long-term acclimation to environmental constraint, namely photooxidative stress imposed by high light combined with cold. {ECO:0000305|PubMed:19906042}. 34948,33655 Probable plastid-lipid-associated protein 1, chloroplastic (AtPap1) (Fibrillin-1a) (Plastoglobulin 35) (AtPGL35),Probable plastid-lipid-associated protein 2, chloroplastic (AtPap2) (Fibrillin-1b) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; nucleus [GO:0005634]; plastoglobule [GO:0010287]; stromule [GO:0010319]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; photoinhibition [GO:0010205]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409],chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; mitochondrion [GO:0005739]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977] DEVELOPMENTAL STAGE: Expressed throughout anther development. {ECO:0000269|PubMed:23602096}. TISSUE SPECIFICITY: Expressed in flower buds. Detected in tapetal cells, endothecium and connective in anthers and in subepidermal cells in filaments. {ECO:0000269|PubMed:23602096}. locus:2136627;,locus:2132006; AT4G04020,AT4G22240 Plastid-lipid-Associated Protein Probable plastid-lipid-associated protein 2, chloroplastic (Fibrillin-like protein 2),Os09g0133600 protein (Fragment) Q6K439,Q0J3C0 PAP2_ORYSJ,Q0J3C0_ORYSJ PAP2 Os09g0133600 LOC_Os09g04790 P0406E03.32-1,Os09g0133600 Os09g0133600 OSNPB_090133600 ENOG411DPWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0330300 protein),Os03g0330300 protein (Fragment),Os03g0330300 protein Q10LY8,A0A0N7KH74,A0A0P0VX21 Q10LY8_ORYSJ,A0A0N7KH74_ORYSJ,A0A0P0VX21_ORYSJ LOC_Os03g21270 Os03g0330300 OsJ_10708 OSNPB_030330300,Os03g0330300 OSNPB_030330300 ENOG411DPWR ARAC7 O82480 RAC7_ARATH Rac-like GTP-binding protein ARAC7 (GTPase protein ROP9) FUNCTION: Acts as a negative regulator of abscisic acid (ABA) responses. {ECO:0000269|PubMed:12417701}. R-ATH-194840; 23043 Rac-like GTP-binding protein ARAC7 (GTPase protein ROP9) intracellular [GO:0005622]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; abscisic acid-activated signaling pathway [GO:0009738]; small GTPase mediated signal transduction [GO:0007264] locus:2123548; AT4G28950 rac-like GTP-binding protein Rac-like GTP-binding protein 2 (OsRac2),Os11g0303400 protein,Os01g0540300 protein,Os05g0513800 protein (Fragment) Q68Y52,Q0IT62,A0A0P0V3N3,A0A0P0WPH4 RAC2_ORYSJ,Q0IT62_ORYSJ,A0A0P0V3N3_ORYSJ,A0A0P0WPH4_ORYSJ RAC2 Os05g0513800 LOC_Os05g43820 B1155G07.15 OsJ_19185 P0022D06.2,Os11g0303400 OSNPB_110303400,Os01g0540300 OSNPB_010540300,Os05g0513800 OSNPB_050513800 FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. ENOG411DPWM Q9FMT4,Q147F4 SNF12_ARATH,Q147F4_ARATH SWI/SNF complex component SNF12 homolog,At3g01890 (SWIB/MDM2 domain superfamily protein) Null: Embryo defective; Cotyledon; Knockdown: Dwarf; Resistant to Agrobacterium transformation in roots-D. Meinke-2010 FUNCTION: Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). {ECO:0000250}. 59271,51329 SWI/SNF complex component SNF12 homolog,At3g01890 (SWIB/MDM2 domain superfamily protein) nucleus [GO:0005634]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; regulation of flower development [GO:0009909]; regulation of gene expression [GO:0010468]; regulation of leaf development [GO:2000024]; regulation of transcription, DNA-templated [GO:0006355]; response to UV-B [GO:0010224]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351],regulation of flower development [GO:0009909] locus:2174638;,locus:2078713; AT5G14170,AT3G01890 SWI SNF complex component SNF12 Os04g0382100 protein (Fragment) Q0JDR8 Q0JDR8_ORYSJ Os04g0382100 Os04g0382100 OSNPB_040382100 ENOG411DPWN EIN2 Q9S814 EIN2_ARATH Ethylene-insensitive protein 2 (AtEIN2) (EIN-2) (Cytokinin-resistant protein AtCKR1) (Protein ORESARA 3) [Cleaved into: EIN2-CEND (EIN2C)] DISRUPTION PHENOTYPE: Complete ethylene insensitivity. {ECO:0000269|PubMed:10381874}. In blue light the mutant has a shorter hypocotyl than in wild type but shows a clear sensitivity to cytokinins.,In darkness the mutant is resistant to cytokinins (only small decrease in hypocotyl length).,The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance.,Identical to the ein2-5 single mutant.There is no noticeable effect on hypocotyl length of dark grown plants supplemented with ethylene.,Following Pythium irregulare infection jasmonic acid levels were dramatically increased in ein2-5 mutants than in wild-type plants.,Following Pythium irregulare infection salicylic acid levels increased over wild-type levels.,In the presence of 150 mM NaCl the leaves of ein2-5 plants started bleaching after 4 days of treatment. The leaf growth of the ein2-5 plants was dramatically inhibited by 400 mM mannitol although remained green the wild-type plants by contrast stayed green and continued to grow.,Increased number of lateral roots. Reduced acropetal auxin transport.,Root growth inhibition by ABA on ein2-5 seedlings increased when the concentrations of ABA were elevated. At the ABA concentrations (0.1-0.25 ;M) which stimulate root growth of wild-type plants root inhibition of the ein2-5 plants started to be observed and the most profound inhibitory effect was observed at 0.25 ;M and higher concentrations of ABA.,Roots of the ein2-5 mutant seedlings showed enhanced sensitivity although to a lesser extent to salt and mannitol compared with the wild-type seedlings over the same period. Roots of ein2-5 seedlings were longer than those of the wild type in the absence of salt and osmotic stress condition.,Seedling growth including cotyledon greening and expansion was more sensitive to osmotic stress conditions. Severe inhibition in seedling growth was observed when NaCl and mannitol concentrations were 150 mM and 400 mM or higher respectively. The cotyledons of the germinated ein2-5 seedlings did not expand and were yellow in the presence of 150 mM NaCl and 400 mM mannitol by 10 days after stratification under light.,Significantly increased susceptibility to the oomycete Pythium irregulare.,The germination of mutant seeds was markedly inhibited by both salt (NaCl) and osmotic stress (mannitol). The inhibition of germination of the mutant was observed at as low a concentration as 50 mM NaCl at which concentration the wild-type seeds hardly showed any inhibition in germination. As the concentrations of NaCl in the media increased the negative effect of the mutation became more evident. On the high salt medium (greater than or equal to 150 mM NaCl) germination of ein2-5 mutant seeds was inhibited to a greater extent than the wild-type seeds. Likewise in the medium containing mannitol the ein2-5 mutant seeds showed similar kinetics in germination. Within a four-day period ein2-5 seeds had more than a 30% reduction in germination in the presence of 500 mM mannitol.,When the mutant was grown on increasing concentrations of ABA cotyledon greening of ein2-5 seedlings was inhibited dramatically and the inhibitory effects were increased in a dose-dependent manner. Reduction in percentage of cotyledons turning green of ein2-5 seedlings was more than 10% at as low as 0.1 μM ABA. At 0.5 μM ABA only about 20% of ein2-5 germinated seedlings turned green while 100% of wild-type seedlings were green at 10 days in light. The root elongation of ein2-5 seedlings was also supersensitive to ABA.,Compared with the parent ein2 and EIN3ox plants etiolated EIN3ox ein2 seedlings exhibited an intermediate phenotype in terms of hypocotyl and root lengths. A reduced EIN3 protein levels were detected in EIN3ox ein2-5 progeny compared with that of EIN3ox parent plants. The EIN3ox ein2 and five seo seedlings were completely unresponsive to ethylene application similar to ein2. In addition treatment with ACC failed to enhance the accumulation of EIN3 protein in EIN3ox ein2-5. The expression levels of ERF1 and EBF2 were not further increased by ethylene in the EIN3ox ein2 plant. By contrast ethylene application enhanced EIN3 protein accumulation and ERF1 and EBF2 gene expression in the EIN3ox plants. Long hypocotyl; Delayed senescence; Insensitive to ethylene, cytokinin and ABA; Resistant to auxin transport inhibitors-J. Ecker-1999 FUNCTION: Central factor in signaling pathways regulated by ethylene (ET), and involved in various processes including development, plant defense, senescence, nucleotide sugar flux, and tropisms. Necessary for ethylene-mediated gene regulation, and for the induction of some genes by ozone. Acts downstream of ET receptors, and upstream of ethylene regulated transcription factors. Required for cytokinin-mediated processes. Seems to be implicated in cross-talk between ET, jasmonate and other pathways. Probably not involved in iron uptake (PubMed:10381874, PubMed:12953109, PubMed:14973160, PubMed:15010611, PubMed:15272873, PubMed:7770519, PubMed:9351240). Has a short half-life and undergoes rapid proteasome-mediated turnover in the absence of ethylene (PubMed:19196655). Required for ethylene-induced EIN3 stabilization via proteasomal degradation of EBF1/EBF2 proteins (PubMed:20647342). Regulates the leaf senescence induced by methyl jasmonate, ethylene and abscisic acid (Ref.17, PubMed:15010611). {ECO:0000269|PubMed:10381874, ECO:0000269|PubMed:12953109, ECO:0000269|PubMed:14973160, ECO:0000269|PubMed:15010611, ECO:0000269|PubMed:15272873, ECO:0000269|PubMed:19196655, ECO:0000269|PubMed:20647342, ECO:0000269|PubMed:7770519, ECO:0000269|PubMed:9351240, ECO:0000269|Ref.17}.; FUNCTION: EIN2-CEND: Trafficking signal inducing ethylene response. The nuclear localization is both necessary and sufficient to activate EIN3-mediated transcription and ethylene responses (PubMed:23070300). Necessary and sufficient for 3'-UTR-mediated translational repression of EBF1 and EBF2 mRNAs. Ethylene induces EIN2-CEND to associate with 3' UTRs in cytoplasmic foci and target EBF1/2 mRNAs to cytoplasmic processing-body (P-body) (PubMed:26496607, PubMed:26496608). MPK6 regulates the cleavage and nuclear translocation of EIN2-CEND under methyl jasmonate treatment (PubMed:26507893). Required for EIN3 accumulation (PubMed:26507893). {ECO:0000269|PubMed:23070300, ECO:0000269|PubMed:26496607, ECO:0000269|PubMed:26496608, ECO:0000269|PubMed:26507893}. MISCELLANEOUS: 'Oresara' means 'long living' in Korean. {ECO:0000305|PubMed:9351240}. 140956 Ethylene-insensitive protein 2 (AtEIN2) (EIN-2) (Cytokinin-resistant protein AtCKR1) (Protein ORESARA 3) [Cleaved into: EIN2-CEND (EIN2C)] endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; transporter activity [GO:0005215]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; cell division [GO:0051301]; cellular response to iron ion [GO:0071281]; cytokinin-activated signaling pathway [GO:0009736]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; establishment of planar polarity [GO:0001736]; ethylene-activated signaling pathway [GO:0009873]; jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway [GO:0009871]; leaf senescence [GO:0010150]; negative regulation of defense response [GO:0031348]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; regulation of stomatal movement [GO:0010119]; response to heat [GO:0009408]; response to molecule of bacterial origin [GO:0002237]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; root hair cell differentiation [GO:0048765]; sugar mediated signaling pathway [GO:0010182]; vasculature development [GO:0001944] TISSUE SPECIFICITY: EIN2-CEND: Localized to the guard cells after methyl jasmonate treatment. {ECO:0000269|PubMed:26507893}. locus:2142594; AT5G03280 ethylene-insensitive protein Protein ETHYLENE-INSENSITIVE 2 (OsEIN2) (Protein MAO HUZI 7),Natural resistance-associated macrophage protein, expressed (Os03g0700800 protein) (cDNA clone:J033093P17, full insert sequence),Os07g0156732 protein (Os07g0157401 protein) (Fragment),Os03g0700800 protein,Os03g0700800 protein (Fragment) Q0D8I9,Q10EG4,A0A0P0X2N3,A0A0P0W267,A0A0P0W1Y8 EIN2_ORYSJ,Q10EG4_ORYSJ,A0A0P0X2N3_ORYSJ,A0A0P0W267_ORYSJ,A0A0P0W1Y8_ORYSJ EIN2 MHZ7 Os07g0155600 LOC_Os07g06130 OSJNBa0024L18.19 OSJNBa0024L18.30 OSJNBa0024L18.49 P0455F03.4,Os03g0700800 LOC_Os03g49400 Os03g0700800 OSNPB_030700800,Os07g0157401 Os07g0156732 OSNPB_070156732 OSNPB_070157401,Os03g0700800 OSNPB_030700800 DISRUPTION PHENOTYPE: Mutant etiolated seedlings display insensitivite ethylene-response in roots and coleoptiles. Mature mutant plants have reduced shoot length, increased number of panicles and reduced grain yield. {ECO:0000269|PubMed:23718947}. FUNCTION: Central factor in ethylene signaling pathways that control development, senescence and grain size. Acts as positive component of the ethylene-signaling pathway. {ECO:0000269|PubMed:15047876, ECO:0000269|PubMed:23718947}. "MISCELLANEOUS: Plants silencing EIN2 display a stunted phenotype with severe inhibition of shoot elongation and produce high levels of ethylene (PubMed:15047876). ""Mao huzi"" means cat whiskers in Chinese (PubMed:23718947). {ECO:0000269|PubMed:15047876, ECO:0000303|PubMed:23718947}." ENOG411DPWG A0A1I9LR23,F4J609 A0A1I9LR23_ARATH,F4J609_ARATH Regulator of chromosome condensation (RCC1) family protein 51812,50543 Regulator of chromosome condensation (RCC1) family protein locus:2076532; AT3G02300 Regulator of chromosome condensation Os03g0599600 protein (Fragment) A0A0P0W020 A0A0P0W020_ORYSJ Os03g0599600 OSNPB_030599600 ENOG411E0P8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC Os03g0659400 protein (Putative DNA-binding protein) (Zinc knuckle family protein, expressed) (cDNA clone:J023021J03, full insert sequence),Os03g0659400 protein (Fragment) Q850T7,A0A0P0W107 Q850T7_ORYSJ,A0A0P0W107_ORYSJ OSJNBb0047K21.1 LOC_Os03g45730 Os03g0659400 OsJ_11975 OSNPB_030659400,Os03g0659400 OSNPB_030659400 ENOG411DSUG PPT2 Q8H0T6,A0A1I9LLT1 PPT2_ARATH,A0A1I9LLT1_ARATH Phosphoenolpyruvate/phosphate translocator 2, chloroplastic (AtPPT2),Phosphoenolpyruvate (Pep)/phosphate translocator 2 FUNCTION: Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP), 2-phosphoglycerate and 3-phosphoglycerate. {ECO:0000269|PubMed:14617097}. 42054,41463 Phosphoenolpyruvate/phosphate translocator 2, chloroplastic (AtPPT2),Phosphoenolpyruvate (Pep)/phosphate translocator 2 chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; phosphoenolpyruvate:phosphate antiporter activity [GO:0015121]; phosphoglycerate transmembrane transporter activity [GO:0015120]; phosphoenolpyruvate transport [GO:0015714]; phosphoglycerate transport [GO:0015713],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Widely expressed in leaves throughout development. In flowers, expressed in sepals and pistils. {ECO:0000269|PubMed:14617097}. locus:2084203; AT3G01550 phosphate translocator 2 NA NA NA NA NA NA NA ENOG411E6ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411EAXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mechanosensitive ion channel Os03g0432900 protein (Fragment) Q0DQZ2 Q0DQZ2_ORYSJ Os03g0432900 Os03g0432900 OSNPB_030432900 ENOG411EAXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os01g0370600 protein A2ZT76 A2ZT76_ORYSJ Os01g0370600 OsJ_01795 OSNPB_010370600 ENOG411EAXY Q9LSA5 FBK62_ARATH F-box/kelch-repeat protein At3g18720 43451 F-box/kelch-repeat protein At3g18720 locus:2094004; AT3G18720 NA NA NA NA NA NA NA NA ENOG411EAXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR_CC Os12g0552700 protein (Fragment) A0A0P0YB49 A0A0P0YB49_ORYSJ Os12g0552700 OSNPB_120552700 ENOG411EAXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EAXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily NA NA NA NA NA NA NA ENOG411EAXE LBD19 O22132 LBD19_ARATH LOB domain-containing protein 19 (ASYMMETRIC LEAVES 2-like protein 23) (AS2-like protein 23) 20980 LOB domain-containing protein 19 (ASYMMETRIC LEAVES 2-like protein 23) (AS2-like protein 23) TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}. locus:2050862; AT2G45410 Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411EAXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EAXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EAXK TBL40 Q67XC4,A0A1P8B0F5 TBL40_ARATH,A0A1P8B0F5_ARATH Protein trichome birefringence-like 40,Trichome birefringence-like protein (DUF828) FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 41768,30876 Protein trichome birefringence-like 40,Trichome birefringence-like protein (DUF828) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; amino acid binding [GO:0016597]; carboxyl- or carbamoyltransferase activity [GO:0016743]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554]; cellular amino acid metabolic process [GO:0006520],amino acid binding [GO:0016597]; carboxyl- or carbamoyltransferase activity [GO:0016743]; cellular amino acid metabolic process [GO:0006520] locus:2055878; AT2G31110 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411EAXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411EAX6 MUP24.8 Q5XF80 Q5XF80_ARATH Anion-transporting ATPase (At5g60730) ARA:AT5G60730-MONOMER; 42940 Anion-transporting ATPase (At5g60730) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] locus:2175816; AT5G60730 anion-transporting ATPase NA NA NA NA NA NA NA ENOG411EAX7 MYB23 Q96276 MYB23_ARATH Transcription factor MYB23 (Myb-related protein 23) (AtMYB23) In addition to having a reduced number of trichome branches myb23 mutants have smaller trichomes.,Patterning of trichomes is not affected. However there is reduced trichome branching with respect to the wild type Columbia.,Patterning of trichomes is not affected. However there is reduced trichome branching compared to the wild type Wassilewskija.,Trichomes are extremely reduced in size and have fewer branches. Also fewer trichomes form along the margins of leaves. Decreased trichome branching-M. Hulskamp-2005 FUNCTION: Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}. 24943 Transcription factor MYB23 (Myb-related protein 23) (AtMYB23) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; root epidermal cell differentiation [GO:0010053]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091]; trichome differentiation [GO:0010026] DEVELOPMENTAL STAGE: First expressed in leaf primordia. Later confined to developing trichome cells where it persists at high levels throughout all stages of trichome development. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15728674}. TISSUE SPECIFICITY: Expressed in roots, seed coats, leaves, stems and flowers. Detected specifically in trichomes, and in the cell division and differentiation zone of the root. {ECO:0000269|PubMed:11437443}. locus:2170553; AT5G40330 myb domain protein 23 NA NA NA NA NA NA NA ENOG411EAX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EAX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trypsin NA NA NA NA NA NA NA ENOG411EAX2 PLDGAMMA1,PLDGAMMA3,PLDGAMMA2 Q9T053,Q9T052,Q9T051,A0A1P8B8B3,A0A1P8B5I3,A0A1P8B5J2 PLDG1_ARATH,PLDG3_ARATH,PLDG2_ARATH,A0A1P8B8B3_ARATH,A0A1P8B5I3_ARATH,A0A1P8B5J2_ARATH Phospholipase D gamma 1 (AtPLDgamma1) (PLD gamma 1) (EC 3.1.4.4) (Choline phosphatase) (Lecithinase D) (Lipophosphodiesterase II),Phospholipase D gamma 3 (AtPLDgamma3) (PLD gamma 3) (EC 3.1.4.4),Phospholipase D gamma 2 (AtPLDgamma2) (PLD gamma 2) (EC 3.1.4.4),Phospholipase D (EC 3.1.4.4),Phospholipase D gamma 2 DISRUPTION PHENOTYPE: Increased tolerance to aluminum. {ECO:0000269|PubMed:22163277}.,DISRUPTION PHENOTYPE: No effect on tolerance to aluminum. {ECO:0000269|PubMed:22163277}. FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence (PubMed:10441386). Can use phosphatidylserine (PS) and phosphatidylethanolamine (PE) as substrates only in the presence of PIP2. Can use phosphatidylcholine (PC), phosphatidylglycerol (PG) or N-acylphosphatidylethanolamine (NAPE) as substrates in the presence of PE and PIP2 (PubMed:9578608, PubMed:17098468). Involved in membrane lipid modulation under aluminum (Al) stress and negatively modulate plant tolerance to Al (PubMed:22163277). {ECO:0000269|PubMed:10441386, ECO:0000269|PubMed:17098468, ECO:0000269|PubMed:22163277, ECO:0000269|PubMed:9578608}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates. {ECO:0000250|UniProtKB:Q9T053}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates. Can use phosphatidylcholine (PC) as substrates in the presence of phosphatidylethanolamine (PE) and PIP2 (PubMed:17098468). Involved in membrane lipid modulation under aluminum (Al) stress and negatively modulate plant tolerance to Al (PubMed:22163277). {ECO:0000269|PubMed:17098468, ECO:0000269|PubMed:22163277}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. MISCELLANEOUS: Presence of a putative myristoylation site MGXXXS (Gly-14). ARA:AT4G11850-MONOMER;MetaCyc:AT4G11850-MONOMER;,ARA:AT4G11840-MONOMER;,ARA:AT4G11830-MONOMER; 3.1.4.4; 3.1.4.4 95588,97482,96024,94155,70761,70936 Phospholipase D gamma 1 (AtPLDgamma1) (PLD gamma 1) (EC 3.1.4.4) (Choline phosphatase) (Lecithinase D) (Lipophosphodiesterase II),Phospholipase D gamma 3 (AtPLDgamma3) (PLD gamma 3) (EC 3.1.4.4),Phospholipase D gamma 2 (AtPLDgamma2) (PLD gamma 2) (EC 3.1.4.4),Phospholipase D (EC 3.1.4.4),Phospholipase D gamma 2 cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; phospholipase D activity [GO:0004630]; embryo development ending in seed dormancy [GO:0009793]; lipid catabolic process [GO:0016042]; membrane lipid metabolic process [GO:0006643]; phosphatidylcholine metabolic process [GO:0046470]; response to aluminum ion [GO:0010044]; response to oxidative stress [GO:0006979],cytoplasm [GO:0005737]; membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470],chloroplast [GO:0009507]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; membrane lipid metabolic process [GO:0006643]; phosphatidylcholine metabolic process [GO:0046470]; response to oxidative stress [GO:0006979],membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470],catalytic activity [GO:0003824] TISSUE SPECIFICITY: Highly expressed in roots and flowers, moderately in stems, leaves and seedlings and low in siliques. Not detected in seeds. {ECO:0000269|PubMed:10198096, ECO:0000269|PubMed:17098468}.,TISSUE SPECIFICITY: Highly expressed in inflorescences and old leaves, moderately in stems, roots, siliques and young leaves and low in flowers. {ECO:0000269|PubMed:17098468}.,TISSUE SPECIFICITY: Highly expressed in roots and flowers, moderately in stems, leaves and seedlings and low in siliques. Not detected in seeds. {ECO:0000269|PubMed:17098468}. locus:2137045;,locus:2137035;,locus:2137025; AT4G11850,AT4G11840,AT4G11830 Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond NA NA NA NA NA NA NA ENOG411EAX3 Q8RX84,Q9CAV2 Q8RX84_ARATH,Q9CAV2_ARATH At5g28150/T24G3_80,AT3g04860/T9J14_19 (Uncharacterized protein T9J14.19) 32062,32136 At5g28150/T24G3_80,AT3g04860/T9J14_19 (Uncharacterized protein T9J14.19) locus:2182029;,locus:2114799; AT5G28150,AT3G04860 Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411EAX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosducin NA NA NA NA NA NA NA ENOG411EAX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411EAX8 CINV2,CINV1 Q67XD9,Q9LQF2,F4HZY9 CINV2_ARATH,CINV1_ARATH,F4HZY9_ARATH Alkaline/neutral invertase CINV2 (EC 3.2.1.26) (Alkaline/neutral invertase I) (A/N-INVI) (Cytosolic invertase 2),Alkaline/neutral invertase CINV1 (EC 3.2.1.26) (Alkaline/neutral invertase G) (A/N-INVG) (Cytosolic invertase 1) (AtCYT-INV1),Cytosolic invertase 1 DISRUPTION PHENOTYPE: Reduced primary root length and increased length and number of lateral roots. Reduced plant growth and early flowering. Reduced seedling levels of glucose and fructose, but increased levels of sucrose. {ECO:0000269|PubMed:17220200, ECO:0000269|PubMed:17508130, ECO:0000269|PubMed:21441406}. Concentration of sucrose in the mutant roots are lower than in wild type. The concentration of myo-inositol is increased as are those of glucose and fructose.,Light green leaves.,Seedlings are more tolerant to high concentrations of glucose and sucrose compared to wild-type seedlings.,Shortened roots.,atinvg mutants have reduced root growth reduced invertase activity and increased expression of antioxidant genes under basal conditions. Short roots; Pale green leaves-H. Xue-2007 FUNCTION: Cytosolic invertase that may cleave sucrose into glucose and fructose, and that is involved in the regulation of root growth. May regulate sugar-mediated root development by controlling sucrose catabolism in root cells. {ECO:0000269|PubMed:19470642}.,FUNCTION: Cytosolic invertase that specifically cleaves sucrose into glucose and fructose and is involved in the regulation of multiple tissue development including primary root elongation, root hair growth, leaf and silique development, and floral transition. Is involved in osmotic stress-induced inhibition on lateral root growth by controlling the concentration of hexose in cells. May regulate sugar-mediated root development by controlling sucrose catabolism in root cells. {ECO:0000269|PubMed:17220200, ECO:0000269|PubMed:17508130, ECO:0000269|PubMed:19470642, ECO:0000269|PubMed:21441406}. MetaCyc:AT4G09510-MONOMER; 3.2.1.26 64233,62834,52216 Alkaline/neutral invertase CINV2 (EC 3.2.1.26) (Alkaline/neutral invertase I) (A/N-INVI) (Cytosolic invertase 2),Alkaline/neutral invertase CINV1 (EC 3.2.1.26) (Alkaline/neutral invertase G) (A/N-INVG) (Cytosolic invertase 1) (AtCYT-INV1),Cytosolic invertase 1 cytosol [GO:0005829]; beta-fructofuranosidase activity [GO:0004564]; glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926]; sucrose alpha-glucosidase activity [GO:0004575]; root development [GO:0048364]; sucrose catabolic process [GO:0005987],cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; beta-fructofuranosidase activity [GO:0004564]; glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926]; sucrose alpha-glucosidase activity [GO:0004575]; carbohydrate metabolic process [GO:0005975]; cellular amino acid metabolic process [GO:0006520]; response to hydrogen peroxide [GO:0042542]; root development [GO:0048364]; sucrose catabolic process [GO:0005987],glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926] TISSUE SPECIFICITY: Expressed in radicle, hypocotyls, root tips and vascular cylinder, leaf vasculature, shoot stipules, trichomes, stem, stigma apex and base of siliques. {ECO:0000269|PubMed:17508130}. locus:2133737;,locus:2014676; AT4G09510,AT1G35580 Pfam:Invertase_neut NA NA NA NA NA NA NA ENOG411EAX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HOX NA NA NA NA NA NA NA ENOG411EH6D RALFL15,RALFL9,RALFL8 A8MQM7,Q3ECL0,Q1ECR9 RLF15_ARATH,RLF9_ARATH,RLF8_ARATH Protein RALF-like 15,Protein RALF-like 9,Protein RALF-like 8 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 8830,8260,8906 Protein RALF-like 15,Protein RALF-like 9,Protein RALF-like 8 apoplast [GO:0048046]; intracellular [GO:0005622]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:12611624}. locus:4010713645;,locus:505006196;,locus:505006195; AT2G22055,AT1G61566,AT1G61563 Cell signaling peptide that may regulate plant stress growth and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2 ) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity) NA NA NA NA NA NA NA ENOG411EFGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cDNA clone J100076G10 full insert sequence Os11g0270000 protein (cDNA, clone: J100043N02, full insert sequence),Os11g0275800 protein,Os11g0269900 protein (cDNA, clone: J100076G10, full insert sequence),Os11g0275600 protein B7FA43,Q53Q84,B7FAJ1,A0A0P0Y1F7 B7FA43_ORYSJ,Q53Q84_ORYSJ,B7FAJ1_ORYSJ,A0A0P0Y1F7_ORYSJ Os11g0270000 Os11g0270000 OSNPB_110270000,Os11g0275800 LOC_Os11g17580 OsJ_33621 OSNPB_110275800,Os11g0269900 OSNPB_110269900,Os11g0275600 OSNPB_110275600 ENOG411DQIZ Q9SAC4,A0A1P8AQ68 FB2_ARATH,A0A1P8AQ68_ARATH F-box protein At1g10780,F-box/RNI-like superfamily protein 47403,48094 F-box protein At1g10780,F-box/RNI-like superfamily protein plasmodesma [GO:0009506] locus:2019978; AT1G10780 F-box protein F-box protein-like (Os09g0454300 protein) (cDNA clone:001-116-F05, full insert sequence),F-box protein family-like (Os08g0469500 protein) Q67UA7,Q6ZC25 Q67UA7_ORYSJ,Q6ZC25_ORYSJ Os09g0454300 OSNPB_090454300 P0025H07.2 P0488D02.38,Os08g0469500 OSNPB_080469500 P0470B03.39 ENOG411DQIX Q9FY96 Q9FY96_ARATH Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At5g13140) (Uncharacterized protein T19L5_100) 29809 Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At5g13140) (Uncharacterized protein T19L5_100) locus:2179832; AT5G13140 Pollen proteins Ole e I like Os09g0508200 protein (cDNA clone:002-118-A04, full insert sequence) Q0J0I1 Q0J0I1_ORYSJ Os09g0508200 Os09g0508200 OSNPB_090508200 ENOG411DQIY BASS1 Q93YR2 BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic (Bile acid transporter 2) (Bile acid-sodium symporter family protein 1) FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. R-ATH-425366; 42747 Probable sodium/metabolite cotransporter BASS1, chloroplastic (Bile acid transporter 2) (Bile acid-sodium symporter family protein 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2202935; AT1G78560 bile acid Probable sodium/metabolite cotransporter BASS1, chloroplastic (Bile acid-sodium symporter family protein 1) Q7XVB3 BASS1_ORYSJ BASS1 Os04g0381100 LOC_Os04g31210 OSJNBa0072D21.3 FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. ENOG411DQIR DER1 Q8VZU9,A0A1P8B4M3 DERL1_ARATH,A0A1P8B4M3_ARATH Derlin-1 (AtDerlin1-1),Derlin FUNCTION: May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins. {ECO:0000250}.,FUNCTION: May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins. {ECO:0000256|RuleBase:RU363059}. R-ATH-382556;R-ATH-532668; 29214,24555 Derlin-1 (AtDerlin1-1),Derlin endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2118294; AT4G29330 May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins Derlin-1 (18 kDa cold-induced protein) (DER1-like protein 1) (OsDerlin 1-1) Q06397 DERL1_ORYSJ DER1 Os05g0187800 LOC_Os05g09550 B1007D10.4 OJ1097_A12.10 OsJ_17392 FUNCTION: May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins. {ECO:0000250}. ENOG411DQIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADP-ribosylation factor GTPase-activating protein Os02g0722500 protein (Putative zinc finger and C2 domain protein) (Zinc finger protein) (cDNA clone:J013051C01, full insert sequence) Q6Z653 Q6Z653_ORYSJ Os02g0722500 OSNPB_020722500 P0654B04.31 ENOG411DQIP UDP-GALT1,GONST5 Q9C521,Q9SFE9 UGAL1_ARATH,GONS5_ARATH UDP-galactose transporter 1 (At-UDP-GalT1),GDP-mannose transporter GONST5 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 5) FUNCTION: Nucleotide sugar transporter that specifically transports UDP-galactose. {ECO:0000269|PubMed:15456736}.,FUNCTION: GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen. {ECO:0000269|PubMed:15480787}. 37791,38848 UDP-galactose transporter 1 (At-UDP-GalT1),GDP-mannose transporter GONST5 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 5) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; GDP-fucose transmembrane transporter activity [GO:0005457]; UDP-galactose transmembrane transporter activity [GO:0005459]; UDP-glucose transmembrane transporter activity [GO:0005460]; GDP-fucose transport [GO:0015783]; UDP-galactose transmembrane transport [GO:0072334]; UDP-glucose transport [GO:0015786],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643]; nucleotide-sugar transport [GO:0015780] TISSUE SPECIFICITY: Expressed in rosette leaves, flowers and siliques. {ECO:0000269|PubMed:15480787}. locus:2204690;,locus:2201138; AT1G77610,AT1G21870 transporter Os08g0104900 protein (Putative glucose-6-phosphate/phosphate translocator) (cDNA clone:001-124-D11, full insert sequence),OSJNBb0020J19.10 protein (Os04g0692000 protein) (cDNA clone:J033133J17, full insert sequence) Q6ZJN0,Q7XKA0 Q6ZJN0_ORYSJ,Q7XKA0_ORYSJ Os08g0104900 OJ1300_E01.7 OSNPB_080104900,Os04g0692000 Os04g0692000 OsJ_16747 OSJNBb0020J19.10 OSNPB_040692000 ENOG411DQIQ Q9SX73,Q9LUM7,Q8GYA7,F4J6D3 KIP1L_ARATH,Q9LUM7_ARATH,Q8GYA7_ARATH,F4J6D3_ARATH Kinase-interacting family protein (KIP1-like family protein),Kinase interacting (KIP1-like) family protein,At3g17680 (Kinase interacting (KIP1-like) family protein) (Uncharacterized protein At3g17680/MKP6_23) FUNCTION: May be involved in the receptor-like kinase-mediated signal transduction pathway. {ECO:0000250|UniProtKB:Q94CG5}. 34190,39299,35566,40814 Kinase-interacting family protein (KIP1-like family protein),Kinase interacting (KIP1-like) family protein,At3g17680 (Kinase interacting (KIP1-like) family protein) (Uncharacterized protein At3g17680/MKP6_23) cytoplasm [GO:0005737]; actin binding [GO:0003779],actin binding [GO:0003779]; kinase activity [GO:0016301] locus:504956328;,locus:2090547; AT1G48405,AT3G17680 KIP1-like protein Kinase interacting protein, putative, expressed (Os03g0110500 protein) Q8H7V8 Q8H7V8_ORYSJ OSJNBb0043C10.3 LOC_Os03g01980 Os03g0110500 OSNPB_030110500 ENOG411DQIV URGT1,URGT2,URGT3,MDH9.11 Q9SRE4,Q9LPU2,Q9FIH5,A8MSB4 URGT1_ARATH,URGT2_ARATH,URGT3_ARATH,A8MSB4_ARATH UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2),UDP-rhamnose/UDP-galactose transporter 2 (UDP-Rha/UDP-Gal transporter 2),UDP-rhamnose/UDP-galactose transporter 3 (UDP-Rha/UDP-Gal transporter 3) (Bi-functional UDP-rhamnose/UDP-galactose transporter),Nucleotide-sugar transporter family protein DISRUPTION PHENOTYPE: No visible phenotype. Slight reduction of galactose content in the cell wall composition. {ECO:0000269|PubMed:25053812}.,DISRUPTION PHENOTYPE: No visible phenotype. Lower content of seed mucilage. {ECO:0000269|PubMed:25053812}. FUNCTION: Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode. {ECO:0000269|PubMed:15456736, ECO:0000269|PubMed:25053812}.,FUNCTION: Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode. {ECO:0000269|PubMed:25053812}. 37693,38044,38057,30792 UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2),UDP-rhamnose/UDP-galactose transporter 2 (UDP-Rha/UDP-Gal transporter 2),UDP-rhamnose/UDP-galactose transporter 3 (UDP-Rha/UDP-Gal transporter 3) (Bi-functional UDP-rhamnose/UDP-galactose transporter),Nucleotide-sugar transporter family protein Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; GDP-fucose transmembrane transporter activity [GO:0005457]; transmembrane transporter activity [GO:0022857]; UDP-galactose transmembrane transporter activity [GO:0005459]; UDP-glucose transmembrane transporter activity [GO:0005460]; GDP-fucose transport [GO:0015783]; plant-type primary cell wall biogenesis [GO:0009833]; response to nematode [GO:0009624]; UDP-galactose transmembrane transport [GO:0072334]; UDP-glucose transport [GO:0015786],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; transmembrane transporter activity [GO:0022857]; carbohydrate transport [GO:0008643]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; purine nucleotide-sugar transmembrane transport [GO:0090480],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; transmembrane transporter activity [GO:0022857]; carbohydrate transport [GO:0008643]; purine nucleotide-sugar transmembrane transport [GO:0090480],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] DEVELOPMENTAL STAGE: Preferentially expressed during seed development. {ECO:0000269|PubMed:25053812}. TISSUE SPECIFICITY: Widely expressed in the whole plant. {ECO:0000269|PubMed:25053812}. locus:2030076;,locus:2199557;,locus:2162271; AT1G76670,AT1G21070,AT5G42420 Triose-phosphate Transporter family Os07g0581000 protein (Transporter-related-like) (cDNA clone:001-125-C07, full insert sequence) Q69V70 Q69V70_ORYSJ Os07g0581000 Os07g0581000 OJ1301_C12.4 OsJ_24886 OSNPB_070581000 P0453G03.28 ENOG411DQIW RIC7 F4JLB7 F4JLB7_ARATH ROP-interactive CRIB motif-containing protein 7 49045 ROP-interactive CRIB motif-containing protein 7 anchored component of membrane [GO:0031225]; apical plasma membrane [GO:0016324]; pollen tube growth [GO:0009860] locus:2139880; AT4G28560 Piriformospora indica-insensitive protein Leucine-rich repeat protein-like (Os06g0627500 protein) (cDNA clone:J033061C03, full insert sequence),Os01g0162600 protein Q67VV7,A0A0P0UYP0 Q67VV7_ORYSJ,A0A0P0UYP0_ORYSJ Os06g0627500 OSJNBa0023I22.4 OSNPB_060627500 P0530H05.19,Os01g0162600 OSNPB_010162600 ENOG411DQIT Q94B03 Q94B03_ARATH Uncharacterized protein At4g12070/F16J13_140 (Uncharacterized protein F16J13.140) 53281 Uncharacterized protein At4g12070/F16J13_140 (Uncharacterized protein F16J13.140) plasma membrane [GO:0005886] locus:2118081; AT4G12070 expressed protein Os02g0717600 protein,Os09g0488700 protein (Fragment) A0A0P0VP17,A0A0P0XPW5 A0A0P0VP17_ORYSJ,A0A0P0XPW5_ORYSJ Os02g0717600 OSNPB_020717600,Os09g0488700 OSNPB_090488700 ENOG411DQIU Q9MAU5,F4I775 Y1049_ARATH,F4I775_ARATH Putative BPI/LBP family protein At1g04970,Lipid-binding serum glycoprotein family protein R-ATH-166016;R-ATH-5686938;R-ATH-6798695;R-ATH-6803157; 53493,39662 Putative BPI/LBP family protein At1g04970,Lipid-binding serum glycoprotein family protein extracellular space [GO:0005615]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; lipopolysaccharide binding [GO:0001530]; reactive oxygen species biosynthetic process [GO:1903409]; regulation of gene expression [GO:0010468],lipid binding [GO:0008289] locus:2010592; AT1G04970 BPI LBP family protein Os09g0482720 protein,Os06g0309200 protein A0A0P0XN92,A0A0P0WVS5 A0A0P0XN92_ORYSJ,A0A0P0WVS5_ORYSJ Os09g0482720 OSNPB_090482720,Os06g0309200 OSNPB_060309200 ENOG411DQIJ IRX12,LAC16 O80434,Q1PDH6,A0A1P8BAQ4 LAC4_ARATH,LAC16_ARATH,A0A1P8BAQ4_ARATH Laccase-4 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 4) (Diphenol oxidase 4) (Protein IRREGULAR XYLEM 12) (Urishiol oxidase 4),Laccase-16 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 16) (Diphenol oxidase 16) (Urishiol oxidase 16),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) no observable phenotype FUNCTION: Lignin degradation and detoxification of lignin-derived products (By similarity). Required for secondary xylem cell wall lignification. {ECO:0000250, ECO:0000269|PubMed:15980264}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ARA:AT2G38080-MONOMER;MetaCyc:AT2G38080-MONOMER;,ARA:AT5G58910-MONOMER; 1.10.3.2 61527,62373,62472 Laccase-4 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 4) (Diphenol oxidase 4) (Protein IRREGULAR XYLEM 12) (Urishiol oxidase 4),Laccase-16 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 16) (Diphenol oxidase 16) (Urishiol oxidase 16),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin biosynthetic process [GO:0009809]; lignin catabolic process [GO:0046274]; plant-type secondary cell wall biogenesis [GO:0009834],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; lignin catabolic process [GO:0046274] DEVELOPMENTAL STAGE: Transcript levels diminished during rosette leaves development. {ECO:0000269|PubMed:15940465}. TISSUE SPECIFICITY: Ubiquitous, with higher levels in the inflorescence stem. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}.,TISSUE SPECIFICITY: Mostly expressed in roots at low level. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2042842;,locus:2154518; AT2G38080,AT5G58910 laccase-4-like Laccase-22 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 22) (Diphenol oxidase 22) (Urishiol oxidase 22),Os11g0708100 protein (Fragment) Q0IQU1,A0A0P0Y5U1 LAC22_ORYSJ,A0A0P0Y5U1_ORYSJ LAC22 Os11g0708100 LOC_Os11g48060 OsJ_033548,Os11g0708100 OSNPB_110708100 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411DQIK SWEET2 Q9LH79 SWET2_ARATH Bidirectional sugar transporter SWEET2 (AtSWEET2) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 2) FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. R-ATH-189200; 26467 Bidirectional sugar transporter SWEET2 (AtSWEET2) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 2) integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; sugar transmembrane transporter activity [GO:0051119]; carbohydrate transport [GO:0008643] locus:2099362; AT3G14770 bidirectional sugar transporter Bidirectional sugar transporter SWEET2a (OsSWEET2a) Q5JJY5 SWT2A_ORYSJ SWEET2A Os01g0541800 LOC_Os01g36070 OsJ_02136 OSJNBa0062A24.19 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. ENOG411DQIH Q9LIH5,A0A1P8AZP3 C3H38_ARATH,A0A1P8AZP3_ARATH Zinc finger CCCH domain-containing protein 38 (AtC3H38),Zinc finger CCCH domain protein 75581,9233 Zinc finger CCCH domain-containing protein 38 (AtC3H38),Zinc finger CCCH domain protein DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:2086914; AT3G18640 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 55 (OsC3H55),Os08g0135800 protein (Fragment) Q6YYC0,A0A0P0XCA5 C3H55_ORYSJ,A0A0P0XCA5_ORYSJ Os08g0135800 LOC_Os08g04170 OJ1613_G04.4-1 P0680F05.43-1,Os08g0135800 OSNPB_080135800 ENOG411DQII LOG4,LOG1,LOG3,LOG6 Q9LFH3,Q8RUN2,Q8L8B8,Q9LYV8,A0A1P8B218,A0A1P8B221,F4IQ18,A0A1P8BDD2 LOG4_ARATH,LOG1_ARATH,LOG3_ARATH,LOG6_ARATH,A0A1P8B218_ARATH,A0A1P8B221_ARATH,F4IQ18_ARATH,A0A1P8BDD2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 (EC 3.2.2.n1) (Protein LONELY GUY 4),Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 (EC 3.2.2.n1) (Protein LONELY GUY 1),Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 (EC 3.2.2.n1) (Protein LONELY GUY 3),Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 (EC 3.2.2.n1) (Protein LONELY GUY 6),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions; due to the redundancy with other LOG proteins. {ECO:0000269|PubMed:19837870}. FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000269|PubMed:19837870}.,FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}.,FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000256|RuleBase:RU363015}. ARA:GQT-1476-MONOMER;,ARA:GQT-1194-MONOMER; 3.2.2.n1 23545,23203,23558,22095,20793,16990,26293,21631 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 (EC 3.2.2.n1) (Protein LONELY GUY 4),Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 (EC 3.2.2.n1) (Protein LONELY GUY 1),Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 (EC 3.2.2.n1) (Protein LONELY GUY 3),Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 (EC 3.2.2.n1) (Protein LONELY GUY 6),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1) cytosol [GO:0005829]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691],cytoplasm [GO:0005737]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691],nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691],hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691] TISSUE SPECIFICITY: Expressed in roots and shoots. Detected in root procambium, lateral root primordia, vascular tissues of cotyledons, leaves and stems, shoot apical meristem, axillary buds, young inflorescences, fruit abscission zones and basal part of ovules. {ECO:0000269|PubMed:19837870}.,TISSUE SPECIFICITY: Expressed in roots and shoots. Detected in the vascular tissues of roots, cotyledons, leaves and pistils, in the shoot apical meristem and in immature flowers. {ECO:0000269|PubMed:19837870}.,TISSUE SPECIFICITY: Expressed in roots and shoots. Detected in root procambium, lateral root primordia, vascular tissues of immature leaves, axillary buds, style and ovular funiculus. {ECO:0000269|PubMed:19837870}. locus:2084051;,locus:2828223;,locus:2143473;,locus:2061733; AT3G53450,AT2G28305,AT2G37210,AT5G03270 Cytokinin riboside 5'-monophosphate phosphoribohydrolase Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 (EC 3.2.2.n1) (Protein LONELY GUY-like 10),Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 (EC 3.2.2.n1) (Protein LONELY GUY-like 3),Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 (EC 3.2.2.n1) (Protein LONELY GUY-like 6),Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 (EC 3.2.2.n1) (Protein LONELY GUY-like 2) Q7XDB8,Q8H7U8,Q0JBP5,B9F166 LOGLA_ORYSJ,LOGL3_ORYSJ,LOGL6_ORYSJ,LOGL2_ORYSJ LOGL10 Os10g0479500 LOC_Os10g33900 OsJ_31908 OSJNBa0055P24.10,LOGL3 Os03g0109300 LOC_Os03g01880 OsJ_09119 OSJNBb0043C10.13,LOGL6 Os04g0518800 LOC_Os04g43840 OsJ_15484 OSJNBb0061C13.8,LOGL2 Os02g0628000 LOC_Os02g41770 OsJ_07599 FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}. ENOG411DQIN Q8L7Z3 DRE2_ARATH Anamorsin homolog (Fe-S cluster assembly protein DRE2 homolog) FUNCTION: Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis, facilitating the de novo assembly of a [4Fe-4S] cluster on the cytosolic Fe-S scaffold complex. Electrons are transferred from NADPH via FAD- and FMN-containing diflavin oxidoreductase TAH18/ATR3 (PubMed:23754812). Together with the diflavin oxidoreductase, also required for the assembly of the diferric tyrosyl radical cofactor of ribonucleotide reductase (RNR), probably by providing electrons for reduction during radical cofactor maturation in the catalytic small subunit (By similarity). Required for embryo development (PubMed:23754812). {ECO:0000255|HAMAP-Rule:MF_03115, ECO:0000269|PubMed:23754812}. 29436 Anamorsin homolog (Fe-S cluster assembly protein DRE2 homolog) cytoplasm [GO:0005737]; mitochondrial intermembrane space [GO:0005758]; 2 iron, 2 sulfur cluster binding [GO:0051537]; metal ion binding [GO:0046872]; iron-sulfur cluster assembly [GO:0016226] locus:2146178; AT5G18400 May be required for the maturation of extramitochondrial Fe S proteins. Has anti-apoptotic effects in the cell (By similarity) Anamorsin homolog 1 (Fe-S cluster assembly protein DRE2 homolog 1),Anamorsin homolog 2 (Fe-S cluster assembly protein DRE2 homolog 2) Q7XQ97,Q7XPW7 DRE21_ORYSJ,DRE22_ORYSJ Os04g0674400 LOC_Os04g57810 OSJNBa0018M05.11,Os04g0682050 LOC_Os04g58564 OsJ_16663 OSJNBa0032F06.14 FUNCTION: Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis, facilitating the de novo assembly of a [4Fe-4S] cluster on the cytosolic Fe-S scaffold complex. Electrons are transferred from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Together with the diflavin oxidoreductase, also required for the assembly of the diferric tyrosyl radical cofactor of ribonucleotide reductase (RNR), probably by providing electrons for reduction during radical cofactor maturation in the catalytic small subunit. {ECO:0000255|HAMAP-Rule:MF_03115}. ENOG411DQIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411DQIB SKIP4 Q9M2C9 SKIP4_ARATH F-box/kelch-repeat protein SKIP4 (SKP1-interacting partner 4) PATHWAY: Protein modification; protein ubiquitination. 40118 F-box/kelch-repeat protein SKIP4 (SKP1-interacting partner 4) protein ubiquitination [GO:0016567]; response to cold [GO:0009409] locus:2098926; AT3G61350 F-box Kelch-repeat protein Os02g0114600 protein (cDNA clone:001-047-H08, full insert sequence) (cDNA clone:J033076O03, full insert sequence) Q0E4K5 Q0E4K5_ORYSJ Os02g0114600 Os02g0114600 OSNPB_020114600 ENOG411DQIC ACT12,ACT1,ACT4,ACT8,ACT11,ACT2,ACT5,ACT3,ACT9 P53497,P0CJ46,P53494,Q96293,P53496,Q96292,Q8RYC2,P0CJ47,P93738,Q8GWA5,A0A1P8AXV8 ACT12_ARATH,ACT1_ARATH,ACT4_ARATH,ACT8_ARATH,ACT11_ARATH,ACT2_ARATH,ACT5_ARATH,ACT3_ARATH,ACT9_ARATH,Q8GWA5_ARATH,A0A1P8AXV8_ARATH Actin-12,Actin-1,Actin-4,Actin-8,Actin-11,Actin-2,Putative actin-5,Actin-3,Putative actin-9,Actin family protein Lacks root hairs.Root hairs initiate but do not develop further.,Short root hairs. 50% reduction in root hair length compared to wild type.,Plants are dwarf. Leaves are smaller and contain fewer cells and fewer lobes than wild type. Reduced number of trichome branches. Petals are narrow. Roots are more severely affected and produce short root hairs. Cell files are irregular and the elongation zone is much reduced.,Mutants have abnormal root hairs that are stunted bulging or may be branched. The orientation of microtubules is abnormal.,Plants are dwarf and reach only 15% of the height of wild type. Roots lack root hairs- the initiate but do not develop further than a bulge. Leaves are small with reduced surface area and fewer lobes. Leaf trichomes are abnormal and contain fewer branches. Also defects in flower morphology reduced fertility abnormal inflorescence structure and abnormal silique development. Short root hairs-B. Keller-2002 FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the reproductive actins.,FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins.,FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. MISCELLANEOUS: There are 8 actin genes in A.thaliana. R-ATH-2029482;R-ATH-5663213; 41795,41798,41779,41863,41675,41877,42117,41422,37082,25973 Actin-12,Actin-1,Actin-4,Actin-8,Actin-11,Actin-2,Putative actin-5,Actin-3,Putative actin-9,Actin family protein chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytoskeleton [GO:0005856]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200],cell wall [GO:0005618]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200]; developmental growth [GO:0048589]; root hair elongation [GO:0048767],cytoskeleton [GO:0005856]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; mRNA binding [GO:0003729]; response to salt stress [GO:0009651]; root hair cell tip growth [GO:0048768],chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytoskeleton [GO:0005856]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200],cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200]; response to cytokinin [GO:0009735]; response to far red light [GO:0010218]; response to high light intensity [GO:0009644]; response to red light [GO:0010114]; root epidermal cell differentiation [GO:0010053]; root hair cell tip growth [GO:0048768]; root hair elongation [GO:0048767],cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; ATP binding [GO:0005524],apoplast [GO:0048046]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200] DEVELOPMENTAL STAGE: Expressed primarily in pollen.,DEVELOPMENTAL STAGE: Significantly expressed during endosperm, ovule and embryo development. TISSUE SPECIFICITY: Displays particular expression in the root cap and pericycle tissues associated with lateral root development. Little or no reproductive-gene expression is detected in vegetative organs, such as stems, leaves, sepals and petals.,TISSUE SPECIFICITY: Preferentially expressed in mature pollen, pollen tubes, young embryo sac, and organ primordia. Little or no reproductive-gene expression is detected in vegetative organs, such as root, stems, leaves, sepals and petals.,TISSUE SPECIFICITY: Little or no reproductive-gene expression is detected in vegetative organs, such as root, stems, leaves, sepals and petals.,TISSUE SPECIFICITY: Strongly expressed in nearly all vegetative tissues, and levels remain high in older tissues. Little or no expression is detected in mature pollen sacs, ovules, embryos or seeds.,TISSUE SPECIFICITY: Preferentially expressed in young and expanding tissues, floral organ primordia, developing seeds, and emerging inflorescence. Displays a very high expression level in mature pollen and pollen tubes. Little or no reproductive-gene expression is detected in vegetative organs, such as root, stems, leaves, sepals and petals.,TISSUE SPECIFICITY: Strongly expressed in nearly all vegetative tissues, and remains high in older tissues. Little or no expression is detected in mature pollen sacs, ovules, embryos or seeds. locus:2075160;,locus:2040656;,locus:2148298;,locus:2028416;,locus:2099302;,locus:2093954;,locus:2059959;,locus:2084410;,locus:2064627;,locus:2060050; AT3G46520,AT2G37620,AT5G59370,AT1G49240,AT3G12110,AT3G18780,AT2G42100,AT3G53750,AT2G42090,AT2G42170 Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells Actin-1 (OsRAC1),Actin-3,Os01g0964133 protein (Putative actin) (cDNA, clone: J100088I07, full insert sequence) Q10DV7,Q10AZ4,Q94DL4 ACT1_ORYSJ,ACT3_ORYSJ,Q94DL4_ORYSJ ACT1 AC1 RAC1 Os03g0718100 LOC_Os03g50885 OsJ_011865 OSJNBa0078A17.12,ACT3 AC3 RAC3 Os03g0836000 LOC_Os03g61970 OsJ_13270 OSJNBa0096I06.10,Os01g0964133 OsJ_04870 OSNPB_010964133 P0483G10.43 FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.; FUNCTION: Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. MISCELLANEOUS: There are at least eight actin genes in rice. ENOG411DQIA FLA17,FLA18,MJJ3.4 Q66GR0,Q93W32,Q9FFK9 FLA17_ARATH,FLA18_ARATH,Q9FFK9_ARATH Fasciclin-like arabinogalactan protein 17,Fasciclin-like arabinogalactan protein 18,Fasciclin-like arabinogalactan protein 17 (Gb|AAF02137.1) FUNCTION: May be a cell surface adhesion protein. 50409,50792,14334 Fasciclin-like arabinogalactan protein 17,Fasciclin-like arabinogalactan protein 18,Fasciclin-like arabinogalactan protein 17 (Gb|AAF02137.1) extracellular region [GO:0005576]; vacuole [GO:0005773] locus:2164290;,locus:2098338;,locus:2166379; AT5G06390,AT3G11700,AT5G05650 fasciclin-like arabinogalactan protein GPI-anchored protein-like (Os07g0160600 protein) (cDNA clone:J013000B24, full insert sequence) (cDNA clone:J013001I08, full insert sequence),Beta-Ig-H3 domain-containing protein, putative, expressed (Expressed protein) (Os03g0788600 protein) (cDNA clone:001-207-E02, full insert sequence) (cDNA clone:J023009K09, full insert sequence),Beta-Ig-H3 domain-containing protein, putative, expressed (Expressed protein) (Os03g0788700 protein) (cDNA clone:J033067C09, full insert sequence) Q7XIM4,Q6F3A5,Q6F3A1 Q7XIM4_ORYSJ,Q6F3A5_ORYSJ,Q6F3A1_ORYSJ OJ1714_H10.127 Os07g0160600 OSNPB_070160600,LOC_Os03g57460 Os03g0788600 OsJ_12880 OSJNBb0024J04.21 OSNPB_030788600,Os03g0788700 LOC_Os03g57490 Os03g0788700 OSJNBb0024J04.24 OSNPB_030788700 ENOG411DQIF LPP1,LPP3,LPP2,PAP1 Q9ZU49,Q8LFD1,Q9XI60,A0A1P8AYQ5,F4IX65,A0A1P8AYJ4 LPP1_ARATH,LPP3_ARATH,LPP2_ARATH,A0A1P8AYQ5_ARATH,F4IX65_ARATH,A0A1P8AYJ4_ARATH Lipid phosphate phosphatase 1 (AtLPP1) (EC 3.1.3.-) (Phosphatidic acid phosphatase 1) (AtPAP1) (Prenyl diphosphate phosphatase),Putative lipid phosphate phosphatase 3, chloroplastic (AtLPP3) (EC 3.1.3.-) (Phosphatidate phosphohydrolase 3) (Phosphatidic acid phosphatase 3),Lipid phosphate phosphatase 2 (AtLPP2) (EC 3.1.3.-) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase),Phosphatidic acid phosphatase 1,Lipid phosphate phosphatase 3 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show hypersensitivity to ABA and significant PA accumulation during seed germination. {ECO:0000269|PubMed:15960620}. "FUNCTION: Plays a general role in cellular responses to stress, may be by attenuating the signal produced by phospholipases. Exhibits both diacylglycerol pyrophosphate (DGPP) phosphatase and phosphatidate (PA) phosphatase activities. Substrate preference is diacylglycerol pyrophosphate > phosphatidate. {ECO:0000269|PubMed:11278556}.,FUNCTION: May play a general ""housekeeping role"" in lipid metabolism. Exhibits both diacylglycerol pyrophosphate (DGPP) phosphatase and phosphatidate (PA) phosphatase activities with no preference for either substrate. May play a role downstream of the ABA signaling pathway during seed germination and in stomatal movement in leaves. {ECO:0000269|PubMed:11278556, ECO:0000269|PubMed:15960620, ECO:0000269|PubMed:21277215}." ARA:MONOMER-AT2G01180;MetaCyc:MONOMER-AT2G01180;,ARA:MONOMER-AT1G15080;MetaCyc:MONOMER-AT1G15080; R-ATH-2029485; 3.1.3.- 36683,40775,32702,36849,35184,35422 Lipid phosphate phosphatase 1 (AtLPP1) (EC 3.1.3.-) (Phosphatidic acid phosphatase 1) (AtPAP1) (Prenyl diphosphate phosphatase),Putative lipid phosphate phosphatase 3, chloroplastic (AtLPP3) (EC 3.1.3.-) (Phosphatidate phosphohydrolase 3) (Phosphatidic acid phosphatase 3),Lipid phosphate phosphatase 2 (AtLPP2) (EC 3.1.3.-) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase),Phosphatidic acid phosphatase 1,Lipid phosphate phosphatase 3 integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; phosphatidate phosphatase activity [GO:0008195]; plant-type hypersensitive response [GO:0009626]; response to UV-B [GO:0010224],chloroplast membrane [GO:0031969]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; phosphatidate phosphatase activity [GO:0008195]; phospholipid metabolic process [GO:0006644],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; acid phosphatase activity [GO:0003993]; phosphatidate phosphatase activity [GO:0008195],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Strongly expressed in leaves, moderately in roots, weakly in floral hamps and flower buds, and not detected in adult flowers and seedpods. {ECO:0000269|PubMed:11278556}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:11278556, ECO:0000269|PubMed:15960620}. locus:2038826;,locus:2076919;,locus:2037758; AT2G01180,AT3G02600,AT1G15080 Lipid phosphate phosphatase Os08g0359200 protein,Os09g0308900 protein (Putative phosphatidic acid phosphatase beta),Os08g0359100 protein (Putative phosphatidic acid phosphatase beta) (cDNA clone:J013119L21, full insert sequence),Os09g0308900 protein (Putative phosphatidic acid phosphatase beta) (cDNA clone:001-111-A01, full insert sequence),Os09g0308900 protein (Fragment),Os05g0549900 protein Q6YZK2,Q69L47,Q6YZK3,Q69L46,A0A0P0XL40,A0A0P0WQP5 Q6YZK2_ORYSJ,Q69L47_ORYSJ,Q6YZK3_ORYSJ,Q69L46_ORYSJ,A0A0P0XL40_ORYSJ,A0A0P0WQP5_ORYSJ P0488B06.38-1 Os08g0359200 OSNPB_080359200,Os09g0308900 Os09g0308900 OsJ_28801 OSJNBa0019B22.8-1 OSJNBa0092O08.28-1 OSNPB_090308900,Os08g0359100 Os08g0359100 OSNPB_080359100 P0488B06.37,Os09g0308900 OSJNBa0019B22.8-2 OSJNBa0092O08.28-2 OSNPB_090308900,Os09g0308900 OSNPB_090308900,Os05g0549900 OSNPB_050549900 ENOG411DQIG SRL1,ATSRL1 Q8RWB1,F4K754,A0A1P8BAH4,A0A1P8BAH8,C0Z324,F4K753 SRL1_ARATH,F4K754_ARATH,A0A1P8BAH4_ARATH,A0A1P8BAH8_ARATH,C0Z324_ARATH,F4K753_ARATH Pre-mRNA splicing factor SR-like 1 (AtSRL1),PRP38 family protein,AT5G37370 protein (PRP38 family protein) FUNCTION: May be required for pre-mRNA splicing (Probable). Confers salt tolerance to LiCl and NaCl (PubMed:12047626). {ECO:0000269|PubMed:12047626, ECO:0000305}. 45857,12858,13204,11271,30334,39366 Pre-mRNA splicing factor SR-like 1 (AtSRL1),PRP38 family protein,AT5G37370 protein (PRP38 family protein) precatalytic spliceosome [GO:0071011]; mRNA processing [GO:0006397]; response to lithium ion [GO:0010226]; response to salt stress [GO:0009651]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Mostly expressed in siliques and leaves, also present in seedlings, flowers and stems, and, at low levels, in roots. {ECO:0000269|PubMed:12047626}. locus:2169160; AT5G37370 PRP38 family Os05g0178900 protein (cDNA clone:J033033I04, full insert sequence),Os05g0178900 protein,Os06g0143600 protein (Fragment) B7F7E9,Q0DKA8,A0A0P0WSV7 B7F7E9_ORYSJ,Q0DKA8_ORYSJ,A0A0P0WSV7_ORYSJ Os05g0178900 OsJ_17330 OSNPB_050178900,Os05g0178900 Os05g0178900 OSNPB_050178900,Os06g0143600 OSNPB_060143600 ENOG411DQID MJH22.7 Q9FM51 Q9FM51_ARATH Transducin/WD40 repeat-like superfamily protein 37534 Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2166315; AT5G63010 WD repeat-containing protein OSJNBa0043L24.13 protein (OSJNBb0002J11.22 protein) (Os04g0507900 protein) (cDNA clone:001-015-E04, full insert sequence) Q7X6X5 Q7X6X5_ORYSJ Os04g0507900 OsJ_15400 OSJNBa0043L24.13 OSJNBb0002J11.22 OSNPB_040507900 ENOG411DQIE Q9ZUJ3 Q9ZUJ3_ARATH AT1G60000 protein (Nucleic acid-binding protein, putative) (Putative nucleic acid-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) (T2K10.5 protein) 28498 AT1G60000 protein (Nucleic acid-binding protein, putative) (Putative nucleic acid-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) (T2K10.5 protein) mRNA binding [GO:0003729] locus:2202740; AT1G60000 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os02g0815200 protein (Putative RNA-binding protein RNP1) (cDNA clone:006-302-B08, full insert sequence) (cDNA clone:J013098L06, full insert sequence) Q6K6C4 Q6K6C4_ORYSJ Os02g0815200 Os02g0815200 OJ1293_E04.28 OsJ_08857 OSNPB_020815200 P0643F09.1 ENOG411DQI8 SINE1 Q5XVI1 SINE1_ARATH Protein SINE1 DISRUPTION PHENOTYPE: No visible phenotype. Affected nucleus positioning in guard cells. {ECO:0000269|PubMed:24891605}. FUNCTION: Plays a role in nucleus positioning in guard cells. {ECO:0000269|PubMed:24891605}. 62153 Protein SINE1 integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; actin binding [GO:0003779]; establishment of nucleus localization [GO:0040023] TISSUE SPECIFICITY: Preferentially expressed in guards cells, but also detected in root cells. {ECO:0000269|PubMed:24891605}. locus:504956282; AT1G54385 NA Os11g0580000 protein (Fragment) A0A0P0Y3X2 A0A0P0Y3X2_ORYSJ Os11g0580000 OSNPB_110580000 ENOG411DQI9 TIR1,AFB2,AFB3 Q570C0,Q9LW29,Q9LPW7 TIR1_ARATH,AFB2_ARATH,AFB3_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 (Weak ethylene-insensitive protein 1),Protein AUXIN SIGNALING F-BOX 2,Protein AUXIN SIGNALING F-BOX 3 DISRUPTION PHENOTYPE: Plant are deficient in a variety of auxin-regulated growth processes including lateral root formation, and hypocotyl and cell elongation. {ECO:0000269|PubMed:9436980}. resistant to auxin inhibition of root elongation; deficient in auxin-regulated growth processes including: reduced lateral root formation reduced temperature-induced hypocotyl elongation and a modest reduction in apical dominance. Abnormal hypocotyl and lateral root formation; Insensitive to auxin-M. Estelle-1998 FUNCTION: Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. The SCF(TIR1) E3 ubiquitin ligase complex is involved in auxin-mediated signaling pathway that regulate root and hypocotyl growth, lateral root formation, cell elongation, and gravitropism. Appears to allow pericycle cells to overcome G2 arrest prior to lateral root development. Plays a role in ethylene signaling in roots. Confers sensitivity to the virulent bacterial pathogen P.syringae. {ECO:0000269|PubMed:10398681, ECO:0000269|PubMed:12606727, ECO:0000269|PubMed:15917797, ECO:0000269|PubMed:15917798, ECO:0000269|PubMed:15992545, ECO:0000269|PubMed:16627744, ECO:0000269|PubMed:18391211, ECO:0000269|PubMed:9436980}.,FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin. {ECO:0000250, ECO:0000269|PubMed:15917797, ECO:0000269|PubMed:15992545, ECO:0000269|PubMed:16627744}.,FUNCTION: Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin. {ECO:0000250, ECO:0000269|PubMed:15917797, ECO:0000269|PubMed:15992545}. MISCELLANEOUS: The myo-inositol hexakisphosphate acts as a structural cofactor. PATHWAY: Protein modification; protein ubiquitination. 66799,64605,64906 Protein TRANSPORT INHIBITOR RESPONSE 1 (Weak ethylene-insensitive protein 1),Protein AUXIN SIGNALING F-BOX 2,Protein AUXIN SIGNALING F-BOX 3 nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; auxin binding [GO:0010011]; auxin receptor activity [GO:0038198]; inositol hexakisphosphate binding [GO:0000822]; ubiquitin-protein transferase activity [GO:0004842]; auxin-activated signaling pathway [GO:0009734]; cell cycle [GO:0007049]; cellular response to phosphate starvation [GO:0016036]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; lateral root formation [GO:0010311]; pollen maturation [GO:0010152]; response to auxin [GO:0009733]; stamen development [GO:0048443],nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; vacuolar membrane [GO:0005774]; auxin binding [GO:0010011]; inositol hexakisphosphate binding [GO:0000822]; auxin-activated signaling pathway [GO:0009734]; defense response [GO:0006952]; pollen maturation [GO:0010152]; protein ubiquitination [GO:0016567]; stamen development [GO:0048443],nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; auxin binding [GO:0010011]; inositol hexakisphosphate binding [GO:0000822]; auxin-activated signaling pathway [GO:0009734]; cellular response to nitrate [GO:0071249]; defense response [GO:0006952]; lateral root development [GO:0048527]; pollen maturation [GO:0010152]; primary root development [GO:0080022]; protein ubiquitination [GO:0016567]; stamen development [GO:0048443] DEVELOPMENTAL STAGE: Abundant expression in developing embryos. In young seedlings, expressed in root apical meristem, and expanding cotyledons and hypocotyls. In older seedlings, still expressed in root apical meristems, but also in lateral root primordia, stipules, shoot apical meristem and vascular tissues. {ECO:0000269|PubMed:10398681}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. In adult plants, mostly expressed in floral stigma, anther filaments, abscission zones and vascular tissues. {ECO:0000269|PubMed:10398681, ECO:0000269|PubMed:9436980}.,TISSUE SPECIFICITY: Ubiquitous, with higer levels in seedlings. {ECO:0000269|PubMed:15992545}.,TISSUE SPECIFICITY: Ubiquitous, with higher levels in flowers. {ECO:0000269|PubMed:15992545}. locus:2099237;,locus:2088464;,locus:2010366; AT3G62980,AT3G26810,AT1G12820 transport inhibitor response Transport inhibitor response 1-like protein Os04g0395600 (TIR1-like protein),Transport inhibitor response 1-like protein Os05g0150500 (TIR1-like protein),Os04g0395600 protein (Fragment) Q7XVM8,Q0DKP3,A0A0P0WA53 TIR1B_ORYSJ,TIR1A_ORYSJ,A0A0P0WA53_ORYSJ Os04g0395600 LOC_Os04g32460 OsJ_14626 OSJNBa0072K14.18,Os05g0150500 LOC_Os05g05800 OsJ_17141 P0001A07.4,Os04g0395600 OSNPB_040395600 MISCELLANEOUS: The myo-inositol hexakisphosphate acts as a structural cofactor. {ECO:0000250}. ENOG411DQI2 NUP205,EMB3142 F4KBW6,A0A1P8BGY9,A0A1P8BGZ1 NU205_ARATH,A0A1P8BGY9_ARATH,A0A1P8BGZ1_ARATH Nuclear pore complex protein NUP205 (Nucleoporin 205) (Protein EMBRYO DEFECTIVE 3142),Nuclear pore complex protein (DUF3414) Embryo defective; Preglobular-D. Meinke-2011 206729,209098,209772 Nuclear pore complex protein NUP205 (Nucleoporin 205) (Protein EMBRYO DEFECTIVE 3142),Nuclear pore complex protein (DUF3414) chloroplast [GO:0009507]; nuclear envelope [GO:0005635]; nuclear pore inner ring [GO:0044611]; structural constituent of nuclear pore [GO:0017056]; mRNA transport [GO:0051028]; nuclear pore organization [GO:0006999]; protein transport [GO:0015031],nuclear pore [GO:0005643] locus:2176197; AT5G51200 nuclear pore complex protein Nup205-like Os02g0202300 protein (Fragment),Os02g0202250 protein Q0E2Z5,A0A0P0VG25 Q0E2Z5_ORYSJ,A0A0P0VG25_ORYSJ Os02g0202300 Os02g0202300 OSNPB_020202300,Os02g0202250 OSNPB_020202250 ENOG411DQI3 F4J8A2 F4J8A2_ARATH Glycosyltransferase family protein 30034 Glycosyltransferase family protein transferase activity [GO:0016740] locus:2081192; AT3G59390 Uncharacterized conserved protein (DUF2054) Os11g0267100 protein A0A0P0Y0X6 A0A0P0Y0X6_ORYSJ Os11g0267100 OSNPB_110267100 ENOG411DQI0 MORF3 Q84JZ6 MORF3_ARATH Multiple organellar RNA editing factor 3, mitochondrial (RNA editing-interacting protein 3) DISRUPTION PHENOTYPE: Retarded growth. {ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. FUNCTION: Involved in organellar RNA editing. Required for the processing of RNA editing sites in mitochondria. {ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. 27558 Multiple organellar RNA editing factor 3, mitochondrial (RNA editing-interacting protein 3) mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; mitochondrial mRNA modification [GO:0080156]; mitochondrial RNA modification [GO:1900864]; mRNA processing [GO:0006397] locus:2083348; AT3G06790 DAG protein DAG protein, chloroplast, putative, expressed (Os03g0581600 protein) (cDNA, clone: J065183O12, full insert sequence) Q10HP1 Q10HP1_ORYSJ Os03g0581600 LOC_Os03g38490 OsJ_11545 OSNPB_030581600 ENOG411DQI1 Q2V3H0 PP322_ARATH Pentatricopeptide repeat-containing protein At4g18975, chloroplastic 33252 Pentatricopeptide repeat-containing protein At4g18975, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:505006498; AT4G18975 Pentatricopeptide repeat-containing protein Os07g0545900 protein A0A0P0X7D5 A0A0P0X7D5_ORYSJ Os07g0545900 OSNPB_070545900 ENOG411DQI6 ABCB19 Q9LJX0 AB19B_ARATH ABC transporter B family member 19 (ABC transporter ABCB.19) (AtABCB19) (Multidrug resistance protein 11) (P-glycoprotein 19) Lateral roots initiate and emerge at normal rates in mdr1-1 mutants but they elongate ~50% more slowly than wild type lateral roots and have a 60% reduction in acropetal auxin transport. Primary root elongation is not impaired in the mutants.,Mutant mdr1-1 seedlings show an 80% reduction in acropetal auxin transport but have normal levels of basipetal transport in their primary roots. Although gravitropism occurs normally in these mutants they have a pronounced increase in root waviness resulting in a threefold increase in absolute curvature relative to wild type seedlings.,mdr1-1 mutants show reduced basipetal auxin transport in light-grown and dark-grown seedling hypocotyls and in their inflorescences .,Lateral roots initiate and emerge at normal rates in mdr1-2 mutants but they elongate ~50% more slowly than wild type lateral roots and have a 60% reduction in acropetal auxin transport. Primary root elongation is not impaired in the mutants.,Mutant mdr1-2 seedlings show an 80% reduction in acropetal auxin transport but have normal levels of basipetal transport in their primary roots. Although gravitropism occurs normally in these mutants they have a pronounced increase in root waviness resulting in a threefold increase in absolute curvature relative to wild type seedlings.,mdr1-2 mutants show reduced basipetal auxin transport in light-grown and dark-grown seedling hypocotyls and in their inflorescences.,dwarf with short inflorescences reduced axillary and secondary inflorescences reduced numbers of rosette and cauline leaves which are smaller and curled,dwarf loss of apical dominance fused cotyledons reduced number of rosette leaves curlier leaves with altered leaf margins,single pin-formed inflorescence stem no axillary or secondary inflorescences no cauline leaves flowers or siliques dwarf reduced number of rosette leaves which are curlier altered leaf margins more tricomes Downward-bending cotyledons and first true leaves; Curled, wrinkled rosette leaf margins; Slow inflorescence growth; Late flowering-E. Spalding-2001 FUNCTION: Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in diverse auxin-mediated responses including gravitropism, phototropism and lateral root formation. {ECO:0000269|PubMed:11701880, ECO:0000269|PubMed:14517332, ECO:0000269|PubMed:15908594}. ARA:AT3G28860-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 136788 ABC transporter B family member 19 (ABC transporter ABCB.19) (AtABCB19) (Multidrug resistance protein 11) (P-glycoprotein 19) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; auxin efflux transmembrane transporter activity [GO:0010329]; acropetal auxin transport [GO:0010541]; anthocyanin accumulation in tissues in response to UV light [GO:0043481]; auxin polar transport [GO:0009926]; auxin transport [GO:0060918]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; formation of plant organ boundary [GO:0090691]; lateral root development [GO:0048527]; photomorphogenesis [GO:0009640]; positive gravitropism [GO:0009958]; regulation of cell size [GO:0008361]; response to auxin [GO:0009733]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red or far red light [GO:0009639]; root development [GO:0048364]; stamen development [GO:0048443] DEVELOPMENTAL STAGE: In seedlings, confined to hypocotyls in darkness, but expressed in all tissues except in hypocotyls in light. In flowers, present in all organs except petals. {ECO:0000269|PubMed:11701880}. TISSUE SPECIFICITY: Ubiquitous, mostly in shoot meristems. {ECO:0000269|PubMed:11701880}. locus:2090734; AT3G28860 ABC transporter B family member Os04g0459000 protein,Os04g0642000 protein,Os04g0642000 protein (Fragment) Q0JCP1,Q0J9M8,A0A0P0WFG2 Q0JCP1_ORYSJ,Q0J9M8_ORYSJ,A0A0P0WFG2_ORYSJ Os04g0459000 Os04g0459000 OsJ_15045 OSNPB_040459000,Os04g0642000 Os04g0642000 OSNPB_040642000,Os04g0642000 OSNPB_040642000 ENOG411DQI4 BPS2 O82360,F4JEB0,F4JFC6 O82360_ARATH,F4JEB0_ARATH,F4JFC6_ARATH BPS1-like protein (Expressed protein) (Uncharacterized protein At2g46080) (Uncharacterized protein At2g46080; T3F17.27),BPS1-like protein 39352,33144,36992 BPS1-like protein (Expressed protein) (Uncharacterized protein At2g46080) (Uncharacterized protein At2g46080; T3F17.27),BPS1-like protein embryo development ending in seed dormancy [GO:0009793] locus:2063015;,locus:2082807; AT2G46080,AT3G61500 protein BPS1 chloroplastic-like UPF0496 protein 4,Os10g0513300 protein (Fragment) Q337C0,A0A0P0XWJ8 U496D_ORYSJ,A0A0P0XWJ8_ORYSJ Os10g0513300 LOC_Os10g36950 OsJ_030878 OSJNBa0026L12.27,Os10g0513300 OSNPB_100513300 ENOG411DQI5 ENDO2 Q9C9G4 ENDO2_ARATH Endonuclease 2 (AtENDO2) (EC 3.1.30.1) (Deoxyribonuclease ENDO2) (Single-stranded-nucleate endonuclease ENDO2) FUNCTION: Probable endonuclease (By similarity). Cannot hydrolyze single-stranded DNA and does not cleave mismatches. {ECO:0000250, ECO:0000269|PubMed:17651368}. 3.1.30.1 32745 Endonuclease 2 (AtENDO2) (EC 3.1.30.1) (Deoxyribonuclease ENDO2) (Single-stranded-nucleate endonuclease ENDO2) endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; DNA catabolic process [GO:0006308] locus:2199297; AT1G68290 nuclease Os01g0128200 protein (Putative nuclease I) (cDNA clone:001-030-F03, full insert sequence),Os01g0128100 protein Q9LGA5,Q0JR05 Q9LGA5_ORYSJ,Q0JR05_ORYSJ Os01g0128200 OSNPB_010128200 P0408F06.1 P0409B08.31,Os01g0128100 Os01g0128100 OSNPB_010128100 ENOG411E733 RIC8 Q9ZWB8 RIC8_ARATH CRIB domain-containing protein RIC8 (ROP-interactive CRIB motif-containing protein 8) (Target of ROP protein RIC8) "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses (By similarity). {ECO:0000250}." 19411 CRIB domain-containing protein RIC8 (ROP-interactive CRIB motif-containing protein 8) (Target of ROP protein RIC8) locus:1009023072; AT1G03982 P21-Rho-binding domain NA NA NA NA NA NA NA ENOG411E738 GASA14 Q9LFR3 GASAE_ARATH Gibberellin-regulated protein 14 (GAST1 protein homolog 14) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 29138 Gibberellin-regulated protein 14 (GAST1 protein homolog 14) extracellular region [GO:0005576]; plasma membrane [GO:0005886]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of reactive oxygen species metabolic process [GO:2000377]; response to abscisic acid [GO:0009737]; response to gibberellin [GO:0009739]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in flower abscission zone, style, stamen filaments and lateral roots. {ECO:0000269|PubMed:17284469}. locus:2147810; AT5G14920 Gibberellin regulated protein Gibberellin stimulated transcript related protein 2 (OSJNBa0060P14.17 protein) (OSJNBb0048E02.8 protein) (Os04g0465300 protein) (cDNA, clone: J065021D20, full insert sequence) Q7X885 Q7X885_ORYSJ GASR2 Os04g0465300 OSJNBa0060P14.17 OSJNBb0048E02.8 OSNPB_040465300 ENOG411E73C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0195700 protein) (cDNA clone:002-174-F07, full insert sequence),Os08g0354700 protein Q53LG7,A0A0P0XEV4 Q53LG7_ORYSJ,A0A0P0XEV4_ORYSJ Os11g0195700 LOC_Os11g09030 Os11g0195700 OSNPB_110195700,Os08g0354700 OSNPB_080354700 ENOG411E73F F13I12.120 Q9SD66 Q9SD66_ARATH Thylakoid soluble phosphoprotein (Uncharacterized protein At3g47070) (Uncharacterized protein F13I12.120) 10530 Thylakoid soluble phosphoprotein (Uncharacterized protein At3g47070) (Uncharacterized protein F13I12.120) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579] locus:2075596; AT3G47070 Thylakoid soluble phosphoprotein TSP9 NA NA NA NA NA NA NA ENOG411E73M Q94F28 Q94F28_ARATH Uncharacterized protein At1g27435/F17L21.30 8764 Uncharacterized protein At1g27435/F17L21.30 locus:505006150; AT1G27435 NA NA NA NA NA NA NA NA ENOG411E73N Q9SJC2 Q9SJC2_ARATH Uncharacterized protein At2g04480 28020 Uncharacterized protein At2g04480 locus:2058289; AT2G04480 NA NA NA NA NA NA NA NA ENOG411DQMJ F4I1N8,F4I1N7 ATG1T_ARATH,F4I1N7_ARATH Serine/threonine-protein kinase ATG1t (EC 2.7.11.-) (Autophagy-related protein 1t),Protein kinase family protein FUNCTION: Serine/threonine protein kinase involved in autophagy. The ATG1-ATG13 protein kinase complex regulates downstream events required for autophagosome enclosure and/or vacuolar delivery. {ECO:0000250|UniProtKB:Q94C95}. 2.7.11.- 46840,43327 Serine/threonine-protein kinase ATG1t (EC 2.7.11.-) (Autophagy-related protein 1t),Protein kinase family protein autophagosome [GO:0005776]; cytoplasmic vesicle [GO:0031410]; ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]; protein serine/threonine kinase activity [GO:0004674]; autophagy [GO:0006914]; protein transport [GO:0015031],ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]; protein kinase activity [GO:0004672] locus:2028496; AT1G49180 Serine threonine-protein kinase Os04g0686600 protein A0A0P0WGL8 A0A0P0WGL8_ORYSJ Os04g0686600 OSNPB_040686600 ENOG411E2VJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os03g0691400 protein (Putative thioesterase family protein) (Thioesterase family protein, putative, expressed) (cDNA clone:J023084L19, full insert sequence) Q6AV57 Q6AV57_ORYSJ Os03g0691400 LOC_Os03g48480 Os03g0691400 OsJ_12176 OSJNBb0101N11.4 OSNPB_030691400 ENOG411E5UT GRXC9 Q9SGP6 GRXC9_ARATH Glutaredoxin-C9 (AtGrxC9) (Protein ROXY 19) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 14758 Glutaredoxin-C9 (AtGrxC9) (Protein ROXY 19) cytoplasm [GO:0005737]; nucleus [GO:0005634]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; jasmonic acid mediated signaling pathway [GO:0009867]; response to salicylic acid [GO:0009751]; salicylic acid mediated signaling pathway [GO:0009863] locus:2032574; AT1G28480 glutaredoxin-C9-like NA NA NA NA NA NA NA ENOG411E5UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0109100 protein (Fragment) A0A0P0WRX5 A0A0P0WRX5_ORYSJ Os06g0109100 OSNPB_060109100 ENOG411E5UF Q9MBG6 Q9MBG6_ARATH Uncharacterized protein 10340 Uncharacterized protein locus:2086992; AT3G28990 Plant protein 1589 of unknown function (A_thal_3526) Os03g0280400 protein (cDNA clone:001-122-C05, full insert sequence) Q10N71 Q10N71_ORYSJ Os03g0280400 LOC_Os03g17200 Os03g0280400 OsJ_10363 OSNPB_030280400 ENOG411E5UB RL3 Q6NNN0 RADL3_ARATH Protein RADIALIS-like 3 (AtRL3) (Protein RAD-like 3) FUNCTION: Probable transcription factor. {ECO:0000250}. MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily. {ECO:0000305|PubMed:16463103}. 9362 Protein RADIALIS-like 3 (AtRL3) (Protein RAD-like 3) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. locus:2115260; AT4G36570 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E5UM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXYZ Q1PFY7,A0A1P8ATF4,A0A1P8ATH6 Q1PFY7_ARATH,A0A1P8ATF4_ARATH,A0A1P8ATH6_ARATH CCT motif family protein (Uncharacterized protein At1g04500) (Zinc finger CONSTANS-like protein),CCT motif family protein 42769,41787,42942 CCT motif family protein (Uncharacterized protein At1g04500) (Zinc finger CONSTANS-like protein),CCT motif family protein nucleus [GO:0005634],integral component of membrane [GO:0016021] locus:2018344; AT1G04500 CCT motif Os10g0466500 protein,Os10g0466500 protein (Fragment) Q0IX46,A0A0N7KRX3 Q0IX46_ORYSJ,A0A0N7KRX3_ORYSJ Os10g0466500 OSNPB_100466500 ENOG411DXYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XS zinc finger domain Os03g0596400 protein A0A0P0W0R2 A0A0P0W0R2_ORYSJ Os03g0596400 OSNPB_030596400 ENOG411DXYS F4JWB9 F4JWB9_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 48486 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2184382; AT5G04610 Inherit from KOG: methyltransferase like 13 NA NA NA NA NA NA NA ENOG411DR9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0523100 protein (Fragment) A0A0N7KM73,A0A0P0WXM4 A0A0N7KM73_ORYSJ,A0A0P0WXM4_ORYSJ Os06g0523100 OSNPB_060523100 ENOG411DR9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase C65 Otubain Os02g0522800 protein (Fragment),Os02g0517600 protein,Os02g0513800 protein (Fragment),Os02g0522700 protein (Fragment) A0A0P0VJN7,A0A0P0VJR2,A0A0P0VJL0,A0A0P0VJN4 A0A0P0VJN7_ORYSJ,A0A0P0VJR2_ORYSJ,A0A0P0VJL0_ORYSJ,A0A0P0VJN4_ORYSJ Os02g0522800 OSNPB_020522800,Os02g0517600 OSNPB_020517600,Os02g0513800 OSNPB_020513800,Os02g0522700 OSNPB_020522700 ENOG411EBRJ GRF13 F4IA59 F4IA59_ARATH General regulatory factor 13 R-ATH-1445148;R-ATH-3371453;R-ATH-3371511; 27925 General regulatory factor 13 protein domain specific binding [GO:0019904] locus:2194754; AT1G78220 14_3_3 NA NA NA NA NA NA NA ENOG411E5U7 TRM18 Q0WT61,F4IV00 Q0WT61_ARATH,F4IV00_ARATH Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein (Uncharacterized protein At2g39440),Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein 52915,52890 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein (Uncharacterized protein At2g39440),Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein apoplast [GO:0048046]; transferase activity [GO:0016740],transferase activity [GO:0016740] locus:4515102965; AT2G39435 NA NA NA NA NA NA NA NA ENOG411E5U6 CRR7 Q9FL87 CRR7_ARATH Protein CHLORORESPIRATORY REDUCTION 7, chloroplastic DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:16359395, ECO:0000269|PubMed:20444231}. No visible phenotype compared to Col-0/gl1 wild-type.,Non-photochemical quenching (NPQ) is slightly increased in the mutant.,No described phenotype. This line was used to assess the formation of the NDH complex by introducing into this double mutant a transgenic copy of the wild-type CRR7 gene. FUNCTION: Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron transport chain. May function in assembly or stabilization of the NDH complex (PubMed:16359395, PubMed:20444231). Required for the accumulation of NDH subcomplex A, which is a core part of NDH. May be involved in post-translational steps during the biogenesis of subcomplex A (PubMed:20444231). {ECO:0000269|PubMed:16359395, ECO:0000269|PubMed:20444231}. 17967 Protein CHLORORESPIRATORY REDUCTION 7, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; NAD(P)H dehydrogenase complex assembly [GO:0010275] locus:2157250; AT5G39210 Protein of unknown function (DUF3571) Os01g0763650 protein (Os01g0763700 protein) Q5JMG0 Q5JMG0_ORYSJ P0512C01.49-2 Os01g0763700 P0403C05.1-2 Os01g0763650 OsJ_03554 OSNPB_010763700 ENOG411E5U0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0516400 protein Q0D626 Q0D626_ORYSJ Os07g0516400 Os07g0516400 OsJ_24451 OSNPB_070516400 ENOG411E5U3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0674233 protein Q6EPF4 Q6EPF4_ORYSJ P0657H12.23 Os02g0674233 OSNPB_020674233 ENOG411E9CS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain NA NA NA NA NA NA NA ENOG411E9CR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411E9CQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily OSJNBa0027O01.11 protein (OSJNBb0006L01.1 protein) (Os04g0182200 protein) (cDNA clone:J013124E20, full insert sequence),Os04g0181901 protein Q7XXC4,A0A0P0W792 Q7XXC4_ORYSJ,A0A0P0W792_ORYSJ Os04g0182200 OSJNBa0027O01.11 OSJNBb0006L01.1 OSNPB_040182200,Os04g0181901 OSNPB_040181901 ENOG411E9CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411E9CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pumilio-family RNA binding repeat Os04g0276200 protein (cDNA clone:J033029C15, full insert sequence),Os04g0276400 protein,Os09g0263016 protein Q0JEH0,A0A0N7KIR5,A0A0P0XJ32 Q0JEH0_ORYSJ,A0A0N7KIR5_ORYSJ,A0A0P0XJ32_ORYSJ Os04g0276200 Os04g0276200 OSNPB_040276200,Os04g0276400 OSNPB_040276400,Os09g0263016 OSNPB_090263016 ENOG411E9CV AGL42 Q9FIS1,F4K6E5,A0A1P8BA62,Q0WRE2,A0A1P8BA41,A0A1P8BA55 AGL42_ARATH,F4K6E5_ARATH,A0A1P8BA62_ARATH,Q0WRE2_ARATH,A0A1P8BA41_ARATH,A0A1P8BA55_ARATH MADS-box protein AGL42 (Protein AGAMOUS-LIKE 42) (Protein FOREVER YOUNG FLOWER),AGAMOUS-like 42,AGAMOUS-like 42 (Uncharacterized protein At5g62165) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21609362}. No root anatomy phenotype FUNCTION: MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. MISCELLANEOUS: Plants over-expressing AGL42 have a significant delay of leaf and flower senescence and a deficiency in flower abscission. {ECO:0000269|PubMed:21689171}. 24673,17928,18424,17966,12648,16272 MADS-box protein AGL42 (Protein AGAMOUS-LIKE 42) (Protein FOREVER YOUNG FLOWER),AGAMOUS-like 42,AGAMOUS-like 42 (Uncharacterized protein At5g62165) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscission [GO:0009838]; cell differentiation [GO:0030154]; floral organ senescence [GO:0080187]; leaf senescence [GO:0010150]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of flower development [GO:0009909]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. locus:505006709; AT5G62165 K-box region NA NA NA NA NA NA NA ENOG411E9CU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os02g0783600 protein,Os10g0484100 protein Q6K7D7,A0A0P0XVE1 Q6K7D7_ORYSJ,A0A0P0XVE1_ORYSJ Os02g0783600 OJ1311_D08.25 OJ1715_H01.5 OsJ_08630 OSNPB_020783600,Os10g0484100 OSNPB_100484100 ENOG411E9CT O82246 Y2778_ARATH REF/SRPP-like protein At2g47780 26642 REF/SRPP-like protein At2g47780 lipid droplet [GO:0005811]; developmental vegetative growth [GO:0080186]; lipid particle organization [GO:0034389]; positive regulation of growth [GO:0045927]; positive regulation of response to water deprivation [GO:1902584] locus:2043373; AT2G47780 Rubber elongation factor protein (REF) NA NA NA NA NA NA NA ENOG411E9CZ STP2 Q9LNV3 STP2_ARATH Sugar transport protein 2 (Hexose transporter 2) FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, xylose, mannose, fructose and galactose. {ECO:0000269|PubMed:10074716}. 55023 Sugar transport protein 2 (Hexose transporter 2) integral component of plasma membrane [GO:0005887]; glucose transmembrane transporter activity [GO:0005355]; monosaccharide transmembrane transporter activity [GO:0015145]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; monosaccharide transport [GO:0015749]; pollen development [GO:0009555] DEVELOPMENTAL STAGE: Specifically expressed in pollen grains when the callose of microspores tetrads undergoes degradation, between early tetrad and late trinucleate stages (at protein level). {ECO:0000269|PubMed:10074716}. TISSUE SPECIFICITY: Pollen specific (at protein level). {ECO:0000269|PubMed:10074716}. locus:2025102; AT1G07340 sugar transporter 2 NA NA NA NA NA NA NA ENOG411E9CY Q9FM66 PLY21_ARATH Putative pectate lyase 21 (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. ARA:AT5G55720-MONOMER; 4.2.2.2 43682 Putative pectate lyase 21 (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2162182; AT5G55720 Pectate lyase NA NA NA NA NA NA NA ENOG411E9CX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os04g0125700 protein (cDNA clone:J033004M16, full insert sequence) (cDNA, clone: J100033K03, full insert sequence),OSJNBa0074B10.5 protein (Os04g0145500 protein),Os04g0141400 protein,Os10g0129200 protein,Os04g0145901 protein,Os04g0123800 protein,Os04g0124666 protein,Os04g0135400 protein (Fragment),Os07g0443700 protein (Fragment),Os04g0141200 protein,Os04g0146300 protein (Fragment),Os04g0134400 protein,Os04g0140400 protein,Os04g0138800 protein,Os04g0140666 protein (Fragment),Os04g0135100 protein,Os04g0123700 protein,Os10g0129466 protein,Os04g0146167 protein,Os10g0129732 protein,Os04g0134601 protein,Os04g0134501 protein,Os04g0136000 protein (Fragment),Os04g0123750 protein Q0JF98,Q7XX91,Q0JF65,B9G7D2,A3AQN6,A0A0P0W6G5,A0A0P0W6A9,A0A0P0W6M3,A0A0P0X5M6,A0A0P0W774,A0A0P0W716,A0A0P0W6E2,A0A0P0W6I7,A0A0P0W6L2,A0A0P0W6Z5,A0A0P0W6Q6,A0A0P0W6I1,A0A0P0XR76,A0A0P0W6L0,A0A0P0XRC5,A0A0P0W6B9,A0A0P0W777,A0A0P0W6G4,A0A0P0W658 Q0JF98_ORYSJ,Q7XX91_ORYSJ,Q0JF65_ORYSJ,B9G7D2_ORYSJ,A3AQN6_ORYSJ,A0A0P0W6G5_ORYSJ,A0A0P0W6A9_ORYSJ,A0A0P0W6M3_ORYSJ,A0A0P0X5M6_ORYSJ,A0A0P0W774_ORYSJ,A0A0P0W716_ORYSJ,A0A0P0W6E2_ORYSJ,A0A0P0W6I7_ORYSJ,A0A0P0W6L2_ORYSJ,A0A0P0W6Z5_ORYSJ,A0A0P0W6Q6_ORYSJ,A0A0P0W6I1_ORYSJ,A0A0P0XR76_ORYSJ,A0A0P0W6L0_ORYSJ,A0A0P0XRC5_ORYSJ,A0A0P0W6B9_ORYSJ,A0A0P0W777_ORYSJ,A0A0P0W6G4_ORYSJ,A0A0P0W658_ORYSJ Os04g0125700 Os04g0125700 OSNPB_040125700,Os04g0145500 OsJ_13686 OSJNBa0074B10.5 OSNPB_040145500,Os04g0141400 Os04g0141400 OSNPB_040141400,Os10g0129200 OsJ_30610 OSNPB_100129200,Os04g0145901 OsJ_13692 OSNPB_040145901,Os04g0123800 OSNPB_040123800,Os04g0124666 OSNPB_040124666,Os04g0135400 OSNPB_040135400,Os07g0443700 OSNPB_070443700,Os04g0141200 OSNPB_040141200,Os04g0146300 OSNPB_040146300,Os04g0134400 OSNPB_040134400,Os04g0140400 OSNPB_040140400,Os04g0138800 OSNPB_040138800,Os04g0140666 OSNPB_040140666,Os04g0135100 OSNPB_040135100,Os04g0123700 OSNPB_040123700,Os10g0129466 OSNPB_100129466,Os04g0146167 OSNPB_040146167,Os10g0129732 OSNPB_100129732,Os04g0134601 OSNPB_040134601,Os04g0134501 OSNPB_040134501,Os04g0136000 OSNPB_040136000,Os04g0123750 OSNPB_040123750 ENOG411E9CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 Os11g0496400 protein (Fragment) Q0ISL7 Q0ISL7_ORYSJ Os11g0496400 Os11g0496400 OSNPB_110496400 ENOG411E9CB IMPA3,MOS6 O04294,A0A1P8B3H5 IMPA3_ARATH,A0A1P8B3H5_ARATH Importin subunit alpha-3 (IMPa-3) (Karyopherin subunit alpha-2) (KAP-alpha-2) (Protein MODIFIER OF SNC1 6),ARM repeat superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show enhanced disease susceptibility to the virulent pathogen H.arabidopsidis isolate NOCO2. {ECO:0000269|PubMed:15964279}. Homozygotes have a WT phenotype with regards to susceptibility to transformation by Agrobacterium. Susceptible to oomycete infection-X. Li-2005 FUNCTION: Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity). Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium, but is not essential for Agrobacterium-mediated root transformation (PubMed:18836040). May be involved in the regulation of pathogen-induced salicylic acid accumulation (PubMed:15964279). {ECO:0000250|UniProtKB:Q96321, ECO:0000269|PubMed:15964279, ECO:0000269|PubMed:18836040}. 58616,45045 Importin subunit alpha-3 (IMPa-3) (Karyopherin subunit alpha-2) (KAP-alpha-2) (Protein MODIFIER OF SNC1 6),ARM repeat superfamily protein cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; defense response [GO:0006952]; NLS-bearing protein import into nucleus [GO:0006607],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein transporter activity [GO:0008565]; protein import into nucleus [GO:0006606] locus:2132238; AT4G02150 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (By similarity) NA NA NA NA NA NA NA ENOG411E9CA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411E9CG GLN1-5 Q8GXW5 GLN15_ARATH Glutamine synthetase cytosolic isozyme 1-5 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;5) (GLN1;5) R-ATH-210455;R-ATH-70614; 6.3.1.2 38907 Glutamine synthetase cytosolic isozyme 1-5 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;5) (GLN1;5) chloroplast [GO:0009507]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; glutamate-ammonia ligase activity [GO:0004356]; glutamine biosynthetic process [GO:0006542]; nitrogen fixation [GO:0009399] TISSUE SPECIFICITY: Not expressed in roots. {ECO:0000269|PubMed:14757761}. locus:2198080; AT1G48470 glutamine synthetase NA NA NA NA NA NA NA ENOG411E9CF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion channel NA NA NA NA NA NA NA ENOG411E9C2 Q0V7P8,Q56XS8,A0A1P8AQ27,A0A1P8BHF1 FBD15_ARATH,FDL2_ARATH,A0A1P8AQ27_ARATH,A0A1P8BHF1_ARATH FBD-associated F-box protein At5g27750,F-box/FBD/LRR-repeat protein At1g13780,F-box/RNI-like/FBD-like domains-containing protein,F-box/FBD-like domains containing protein 53038,52996,39052,42753 FBD-associated F-box protein At5g27750,F-box/FBD/LRR-repeat protein At1g13780,F-box/RNI-like/FBD-like domains-containing protein,F-box/FBD-like domains containing protein locus:2180325;,locus:2014859; AT5G27750,AT1G13780 CONTAINS InterPro DOMAIN s Cyclin-like F-box (InterPro IPR001810) FBD (InterPro IPR013596) FBD-like (InterPro IPR006566) Leucine-rich repeat 2 (InterPro IPR013101) NA NA NA NA NA NA NA ENOG411E9C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 Os08g0364250 protein Q8H4X2 Q8H4X2_ORYSJ OJ1484_G09.104 Os08g0364250 OJ1118_F01.20 OSNPB_080364250 ENOG411E9C5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0690600 protein A0A0P0Y5N1 A0A0P0Y5N1_ORYSJ Os11g0690600 OSNPB_110690600 ENOG411E9C9 CYP706A3,''cytochrome P450 Q9LU04,Q9STH8 Q9LU04_ARATH,Q9STH8_ARATH Cytochrome P450, family 706, subfamily A, polypeptide 3 (Flavonoid 3',5'-hydroxylase-like; cytochrome P450),Cytochrome P450, family 706, subfamily A, polypeptide 7 (Flavonoid 3', 5'-hydroxylase like protein) (Flavonoid 3, 5-hydroxylase like protein) ARA:AT5G44620-MONOMER; 59378,58773 Cytochrome P450, family 706, subfamily A, polypeptide 3 (Flavonoid 3',5'-hydroxylase-like; cytochrome P450),Cytochrome P450, family 706, subfamily A, polypeptide 7 (Flavonoid 3', 5'-hydroxylase like protein) (Flavonoid 3, 5-hydroxylase like protein) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2152150;,locus:2139129; AT5G44620,AT4G12330 Cytochrome P450 NA NA NA NA NA NA NA ENOG411E2E1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ricin B-like lectin R40G2 (Osr40g2),Os07g0683900 protein (Fragment) Q6Z4N6,A0A0P0XAI8 40G2_ORYSJ,A0A0P0XAI8_ORYSJ R40G2 Os07g0683900 LOC_Os07g48490 OSJNBa0060O17.13-1 OSJNBa0060O17.13-2,Os07g0683900 OSNPB_070683900 FUNCTION: Lectin which binds carbohydrates in vitro. Interacts through its lectin domain with glycan structures containing specific motifs. {ECO:0000250|UniProtKB:Q945P1}. ENOG411EMD3 NUDT4,NUDT21 Q9LE73,Q8VY81 NUDT4_ARATH,NUD21_ARATH Nudix hydrolase 4 (AtNUDT4) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase 21, chloroplastic (AtNUDT21) (EC 3.6.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear. {ECO:0000269|PubMed:15878881}.,FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}. ARA:AT1G18300-MONOMER;,ARA:AT1G73540-MONOMER; 3.6.1.-; 3.6.1.13; 3.6.1.22,3.6.1.- 23701,22636 Nudix hydrolase 4 (AtNUDT4) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase 21, chloroplastic (AtNUDT21) (EC 3.6.1.-) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ADP-ribose diphosphatase activity [GO:0047631]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; metal ion binding [GO:0046872]; NAD+ diphosphatase activity [GO:0000210],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:15878881}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2014164;,locus:2206835; AT1G18300,AT1G73540 Nudix hydrolase NA NA NA NA NA NA NA ENOG411EFZ7 CAF1-4,CAF1-3,CAF1-5,CAF1-8 Q9C6M9,Q9SFX6,O64773,Q9LXM4 CAF1D_ARATH,CAF1C_ARATH,CAF1E_ARATH,CAF1H_ARATH Putative CCR4-associated factor 1 homolog 4 (EC 3.1.13.4),Putative CCR4-associated factor 1 homolog 3 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 5 (EC 3.1.13.4),Putative CCR4-associated factor 1 homolog 8 (EC 3.1.13.4) FUNCTION: Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity). {ECO:0000250}. 3.1.13.4 34862,35923,32162,27213 Putative CCR4-associated factor 1 homolog 4 (EC 3.1.13.4),Putative CCR4-associated factor 1 homolog 3 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 5 (EC 3.1.13.4),Putative CCR4-associated factor 1 homolog 8 (EC 3.1.13.4) CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; negative regulation of translation [GO:0017148]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2010414;,locus:2029826;,locus:2197669;,locus:2095705; AT1G27890,AT1G27820,AT1G61470,AT3G44240 CCR4-associated factor 1 homolog 8 NA NA NA NA NA NA NA ENOG411EFZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR NA NA NA NA NA NA NA ENOG411EFZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin-dependent kinase inhibitor 2 (KIP-related protein 2) Q283L3 KRP2_ORYSJ KRP2 Os06g0213700 LOC_Os06g11050 P0537F07.1 P0701E03.40 ENOG411EFZ4 Q3E9A8 Q3E9A8_ARATH Plant/protein 12061 Plant/protein locus:2147710; AT5G20100 NA NA NA NA NA NA NA NA ENOG411EFZ3 RL2 Q9SIJ5 RADL2_ARATH Protein RADIALIS-like 2 (AtRL2) (Protein RAD-like 2) (Protein MATERNAL EFFECT EMBRYO ARREST 3) (Protein RADIALIS-LIKE SANT/MYB 1) (Protein RSM1) DISRUPTION PHENOTYPE: Endosperm development arrested. {ECO:0000269|PubMed:15634699}. FUNCTION: Probable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}. MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily. {ECO:0000305|PubMed:16463103}. 11508 Protein RADIALIS-like 2 (AtRL2) (Protein RAD-like 2) (Protein MATERNAL EFFECT EMBRYO ARREST 3) (Protein RADIALIS-LIKE SANT/MYB 1) (Protein RSM1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; gravitropism [GO:0009630]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the funiculus of ovules and in embryos. In young ovules, expression is observed in the adaxial side of the funiculus (the stalk connecting the embryo sac to the placenta). Also expressed in heart-stage embryos, in the cortex and endodermis of the hypocotyl region but not in the cotyledons, shoot and root apical meristems, provasculature or epidermis. Not detected in young seedlings, mature roots or in young floral primordia. {ECO:0000269|PubMed:17672842}. locus:2049374; AT2G21650 maternal effect embryo arrest 3 NA NA NA NA NA NA NA ENOG411EFZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytosol aminopeptidase family catalytic domain NA NA NA NA NA NA NA ENOG411EFZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA polygalacturonase inhibitor 2-like NA NA NA NA NA NA NA ENOG411EFZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZD T21L8.160 Q9STY2 Q9STY2_ARATH Hypthetical protein 24697 Hypthetical protein integral component of membrane [GO:0016021] locus:2099575; AT3G47410 NA NA NA NA NA NA NA NA ENOG411EFZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EFZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0103800 protein) Q10T20 Q10T20_ORYSJ Os03g0103800 LOC_Os03g01360 Os03g0103800 OSNPB_030103800 ENOG411EFZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZM AtS40-3 Q8GX72 Q8GX72_ARATH At4g18980 (AtS40-3) (Uncharacterized protein At4g18980/F13C5_150) Delayed senescence-K. Krupinska-2010 12517 At4g18980 (AtS40-3) (Uncharacterized protein At4g18980/F13C5_150) nucleus [GO:0005634]; leaf senescence [GO:0010150]; regulation of gene expression [GO:0010468] locus:2117174; AT4G18980 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411EFZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZH Q1G3L0,A0A1P8B4S5,B3H5B9 Q1G3L0_ARATH,A0A1P8B4S5_ARATH,B3H5B9_ARATH Transmembrane protein 13609,15539,13293 Transmembrane protein integral component of membrane [GO:0016021] locus:4515103329;,locus:4515102545; AT4G02655,AT1G18486 NA NA NA NA NA NA NA NA ENOG411EFZW MSK20.3,MNJ8.2,MNJ8.3,MNJ8.6,MNJ8.1 Q9FG51,Q9FHU1,Q9FHU0,Q9FHT8,F4K5X5,F4K5X2 Q9FG51_ARATH,Q9FHU1_ARATH,Q9FHU0_ARATH,Q9FHT8_ARATH,F4K5X5_ARATH,F4K5X2_ARATH Gb|AAD18119.1 (RING/U-box superfamily protein),RING/U-box superfamily protein (Similarity to RING zinc finger protein),At5g37270 (Gb|AAD18119.1) (RING/U-box superfamily protein),RING/U-box superfamily protein 24995,24231,23996,24168,22271,24225 Gb|AAD18119.1 (RING/U-box superfamily protein),RING/U-box superfamily protein (Similarity to RING zinc finger protein),At5g37270 (Gb|AAD18119.1) (RING/U-box superfamily protein),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2173497;,locus:2169105;,locus:2169145;,locus:2169125;,locus:2169095; AT5G37200,AT5G37230,AT5G37270,AT5G37250,AT5G37220 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EFZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-ala D-ala ligase N-terminus NA NA NA NA NA NA NA ENOG411EFZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPP4R2 NA NA NA NA NA NA NA ENOG411EFZP SPH16,SPH17,SPH23,SPH31 F2Q9V5,P0DN94,Q9LW24,Q9LVX2,Q1G3H7,Q9SK44,A0A1P8B9Z0 SPH16_ARATH,SPH17_ARATH,SPH23_ARATH,SPH31_ARATH,Q1G3H7_ARATH,Q9SK44_ARATH,A0A1P8B9Z0_ARATH S-protein homolog 16,S-protein homolog 17,S-protein homolog 23,S-protein homolog 31,Plant self-incompatibility protein S1 family,Plant self-incompatibility protein S1 family (Uncharacterized protein At2g24880) 16337,16244,13958,15884,15434,11904,19055 S-protein homolog 16,S-protein homolog 17,S-protein homolog 23,S-protein homolog 31,Plant self-incompatibility protein S1 family,Plant self-incompatibility protein S1 family (Uncharacterized protein At2g24880) extracellular region [GO:0005576]; rejection of self pollen [GO:0060320],extracellular region [GO:0005576]; regulation of translation [GO:0006417]; rejection of self pollen [GO:0060320],integral component of membrane [GO:0016021] locus:2088424;,locus:2089129;,locus:1009023404;,locus:2047390; AT4G23498,AT4G08558,AT3G26860,AT3G27680,AT5G04347,AT2G24880 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EFZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase rRNA N-glycosidase (EC 3.2.2.22) B9FA32 B9FA32_ORYSJ Os03g0653900 OsJ_11938 OSNPB_030653900 ENOG411EFZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: transposon protein NA NA NA NA NA NA NA ENOG411EKVA NMAT3 Q9LZA5,F4KI47 NMAT3_ARATH,F4KI47_ARATH Nuclear intron maturase 3, mitochondrial (AtnMat3) (EC 3.1.-.-) (Nuclear intron maturase 2 a) (AtnMat2a),RNA-directed DNA polymerase (Reverse transcriptase) FUNCTION: Nuclear-encoded maturase required for splicing of group-II introns in mitochondria. Necessary for mitochondrial biogenesis during early developmental stages. {ECO:0000250|UniProtKB:Q9CA78}. 3.1.-.- 83496,69600 Nuclear intron maturase 3, mitochondrial (AtnMat3) (EC 3.1.-.-) (Nuclear intron maturase 2 a) (AtnMat2a),RNA-directed DNA polymerase (Reverse transcriptase) mitochondrion [GO:0005739]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; RNA-directed DNA polymerase activity [GO:0003964]; Group II intron splicing [GO:0000373]; intron homing [GO:0006314]; mitochondrial mRNA processing [GO:0090615],RNA-directed DNA polymerase activity [GO:0003964]; mRNA processing [GO:0006397] locus:2150660; AT5G04050 Type II intron maturase NA NA NA NA NA NA NA ENOG411EKVF TPR2 Q9LRZ0 TPR2_ARATH Topless-related protein 2 FUNCTION: Transcriptional corepressor. Negative regulator of jasmonate responses (By similarity). {ECO:0000250}. 124760 Topless-related protein 2 nucleus [GO:0005634]; primary shoot apical meristem specification [GO:0010072]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2086770; AT3G16830 CTLH NA NA NA NA NA NA NA ENOG411EKVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LisH NA NA NA NA NA NA NA ENOG411EKVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411EJ0P CRK13 Q0PW40,A0A1P8B741 CRK13_ARATH,A0A1P8B741_ARATH Cysteine-rich receptor-like protein kinase 13 (Cysteine-rich RLK13) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 13 2.7.11.- 75295,59735 Cysteine-rich receptor-like protein kinase 13 (Cysteine-rich RLK13) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 13 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626]; protein phosphorylation [GO:0006468]; response to molecule of bacterial origin [GO:0002237],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2121606; AT4G23210 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EJ0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EJ0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LisH NA NA NA NA NA NA NA ENOG411EJ0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EJ0F SQE6 O65402,A0A1P8BA09,A0A1P8BA10 ERG12_ARATH,A0A1P8BA09_ARATH,A0A1P8BA10_ARATH Squalene epoxidase 6 (AtSQE6) (EC 1.14.14.17) (Squalene monooxygenase 1,2) (SE 1,2),Squalene monooxygenase 6 FUNCTION: Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway. {ECO:0000250|UniProtKB:Q9SM02}. PATHWAY: Terpene metabolism; lanosterol biosynthesis; lanosterol from farnesyl diphosphate: step 2/3. ARA:AT5G24160-MONOMER; R-ATH-191273; 1.14.14.17 56890,43618,48582 Squalene epoxidase 6 (AtSQE6) (EC 1.14.14.17) (Squalene monooxygenase 1,2) (SE 1,2),Squalene monooxygenase 6 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506],integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506] TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, inflorescences and siliques. {ECO:0000269|PubMed:17426032}. locus:2151832; AT5G24160 Squalene epoxidase NA NA NA NA NA NA NA ENOG411EJ0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EKV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EKV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EKI3 ISA3 Q9M0S5 ISOA3_ARATH Isoamylase 3, chloroplastic (AtISA3) (EC 3.2.1.68) DISRUPTION PHENOTYPE: Strong increase of the starch level in leaves at the end of both day and night periods, but no modification in water-soluble polysaccharides content. No alteration of the amylase-to-amylopectin ratio. {ECO:0000269|PubMed:15849301, ECO:0000269|PubMed:16495218}. No significant alteration in chain length profile of amylopectin.,No significant alteration of amylase-to-amylopectine ratio.,no modification of water soluble polysaccharides (WSPs) content.,starch overproducer.,23% reduction in maltose production.,62% reduction in maltotriose production.,Delayed growth compared to wildtype.,Increased &,Increased frequency of chains of dp3 and to a lesser degree of dp4 and dp5. Decreased abundance of chains between dp9 and dp16.,Reduced beta-limit dextrin debranching activity.,Throughout the diurnal cycle this mutant contains more starch than wildtype. Appreciable amounts of starch were however degraded during the night (67.5% of wildtype levels). Extending the night by 48h led to almost all the starch being remobilized.,Same phenotype as atisa3-2.,72% reduction in maltose production.,96% reduction in maltotriose production.,Delayed growth compared to wildtype (stronger phenotype than in single mutant atisa3-2).,Marked reduction in starch breakdown (48.3% compared to wildtype degradation). Even after 260h in extended night the youngest leaves still stain darkly for starch with iodine solution. Severely elevated starch levels; No other phenotypes detected-C. D’Hulst-2005 FUNCTION: Involved in starch catabolism. ISA3 removes different branches than ISA1-ISA2, namely short chains that prevent amylopectin crystallization. May be the debranching enzyme required to assist beta-amylases for starch degradation in leaves at night. {ECO:0000269|PubMed:16495218, ECO:0000269|PubMed:18815382, ECO:0000269|PubMed:19074683}. MISCELLANEOUS: Double mutant shows that ISA3 and PU1 have redundant function for starch degradation. PATHWAY: Glycan degradation; starch degradation. ARA:AT4G09020-MONOMER;MetaCyc:AT4G09020-MONOMER; 3.2.1.68; 3.2.1.68 86322 Isoamylase 3, chloroplastic (AtISA3) (EC 3.2.1.68) chloroplast [GO:0009507]; chloroplast starch grain [GO:0009569]; chloroplast stroma [GO:0009570]; isoamylase activity [GO:0019156]; starch catabolic process [GO:0005983] locus:2122343; AT4G09020 Isoamylase 3 Os09g0469400 protein (Fragment) A0A0P0XNU2 A0A0P0XNU2_ORYSJ Os09g0469400 OSNPB_090469400 ENOG411EKI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA (By similarity) NA NA NA NA NA NA NA ENOG411EKI7 ISA1 O04196,A0A1P8B0K2,A0A1P8B0L6 ISOA1_ARATH,A0A1P8B0K2_ARATH,A0A1P8B0L6_ARATH Isoamylase 1, chloroplastic (AtISA1) (EC 3.2.1.68),Isoamylase 1 DISRUPTION PHENOTYPE: Strong reduction of the starch level in leaves, but 50-fold increase of water-soluble polysaccharides. No alteration of the amylase-to-amylopectin ratio. {ECO:0000269|PubMed:15743447, ECO:0000269|PubMed:15849301}. Accumulates reduced amounts of starch relative to wildtype but large amounts of soluble glucan.,Modification of amylopectine structure. Strong increase of number of small chain (degree of polymerisation between 5 and 9) and decrease in number of longer chains (11-17 degree of polymerisation).,Mutants are defecting in amylopectin biosynthesis. Reduced amounts of starch and abnormal amylopectin phytoglycogens are produced.,No significant alteration of amylase-to-amylopectine ratio.,Reduced starch in leaves,Strong increase in water soluble polysaccharides (WSPs) content.,No reduction in maltose and matotriose production. Low starch levels-S. Zeeman-2005 FUNCTION: Involved in the trimming of pre-amylopectin chains. Accelerates the crystallization of nascent amylopectin molecules during starch synthesis. ISA1 and ISA2 work exclusively together as a multimeric holoenzyme. ISA1-ISA2 removes preferentially branches that are very close to other branches. {ECO:0000269|PubMed:15743447, ECO:0000269|PubMed:18815382, ECO:0000269|PubMed:19074683}. MISCELLANEOUS: In the absence of ISA2, ISA1 may be unstable. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT2G39930-MONOMER; 3.2.1.68; 3.2.1.68 89481,73585,77408 Isoamylase 1, chloroplastic (AtISA1) (EC 3.2.1.68),Isoamylase 1 chloroplast [GO:0009507]; chloroplast isoamylase complex [GO:0010368]; isoamylase activity [GO:0019156]; amylopectin biosynthetic process [GO:0010021]; starch biosynthetic process [GO:0019252],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2061216; AT2G39930 isoamylase NA NA NA NA NA NA NA ENOG411EKI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NA NA NA NA NA NA NA ENOG411EKI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein phosphatase Serine/threonine-protein phosphatase (EC 3.1.3.16) Q6Z0R3 Q6Z0R3_ORYSJ Os08g0455600 B1144B06.13 OSNPB_080455600 P0048G02.50 ENOG411EKI8 A0A1I9LND6 A0A1I9LND6_ARATH Calcineurin-like metallo-phosphoesterase superfamily protein 29637 Calcineurin-like metallo-phosphoesterase superfamily protein hydrolase activity [GO:0016787] Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411EKV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EKIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKIY SAT5 Q42538 SAT5_ARATH Serine acetyltransferase 5 (AtSAT-5) (EC 2.3.1.30) (AtSERAT1;1) (SAT-c) PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 1/2. ARA:AT5G56760-MONOMER;MetaCyc:AT5G56760-MONOMER; 2.3.1.30; 2.3.1.30 32770 Serine acetyltransferase 5 (AtSAT-5) (EC 2.3.1.30) (AtSERAT1;1) (SAT-c) cytosol [GO:0005829]; serine O-acetyltransferase activity [GO:0009001]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535] TISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques. Localized in vascular tissues, particularly in phloem. {ECO:0000269|PubMed:12650624, ECO:0000269|PubMed:15579666}. locus:2164996; AT5G56760 serine acetyltransferase Probable serine acetyltransferase 1 (EC 2.3.1.30) (OsSERAT1;1),Probable serine acetyltransferase 5 (EC 2.3.1.30) (OsSERAT1;2),Os05g0533500 protein Q8W0E4,Q0DGG8,A0A0P0WQ42 SAT1_ORYSJ,SAT5_ORYSJ,A0A0P0WQ42_ORYSJ SAT1 Os01g0720700 LOC_Os01g52260 OsJ_003188 P0690B02.9,SAT5 Os05g0533500 LOC_Os05g45710,Os05g0533500 OSNPB_050533500 ENOG411EKIX SAT4,SAT2 Q8W2B8,Q8S895 SAT4_ARATH,SAT2_ARATH Serine acetyltransferase 4 (AtSAT-4) (AtSERAT3;2) (EC 2.3.1.30),Serine acetyltransferase 2 (AtSAT-2) (AtSERAT3;1) (EC 2.3.1.30) PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 1/2. 2.3.1.30; 2.3.1.30 38424,34534 Serine acetyltransferase 4 (AtSAT-4) (AtSERAT3;2) (EC 2.3.1.30),Serine acetyltransferase 2 (AtSAT-2) (AtSERAT3;1) (EC 2.3.1.30) cytosol [GO:0005829]; serine O-acetyltransferase activity [GO:0009001]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535]; sulfate assimilation [GO:0000103] TISSUE SPECIFICITY: Localized in vascular tissues, particularly in phloem. {ECO:0000269|PubMed:15579666}.,TISSUE SPECIFICITY: Ubiquitously expressed at low levels. Localized in vascular tissues, particularly in phloem. {ECO:0000269|PubMed:12650624, ECO:0000269|PubMed:15579666}. locus:2127978;,locus:2057254; AT4G35640,AT2G17640 serine acetyltransferase Probable serine acetyltransferase 2 (EC 2.3.1.30) (OsSERAT3;1) Q10S58 SAT2_ORYSJ SAT2 Os03g0133900 LOC_Os03g04140 OJ1006F06.16 ENOG411EKIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase At1g18480/F15H18_1 (Expressed protein) (Os11g0261900 protein) (cDNA clone:002-126-A02, full insert sequence) Q53KP2 Q53KP2_ORYSJ LOC_Os11g15570 Os11g0261900 OSNPB_110261900 ENOG411EKIA TOPP8,TOPP9 O82734,Q9M9W3,A0A1P8BC75,A0A1I9LPD2 PP18_ARATH,PP19_ARATH,A0A1P8BC75_ARATH,A0A1I9LPD2_ARATH Serine/threonine-protein phosphatase PP1 isozyme 8 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP1 isozyme 9 (EC 3.1.3.16),Serine/threonine-protein phosphatase (EC 3.1.3.16) FUNCTION: Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro. {ECO:0000269|PubMed:21222654}. 3.1.3.16 36806,36001,37591,29362 Serine/threonine-protein phosphatase PP1 isozyme 8 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP1 isozyme 9 (EC 3.1.3.16),Serine/threonine-protein phosphatase (EC 3.1.3.16) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721] TISSUE SPECIFICITY: Expressed in roots, rosettes and flowers. locus:2180330;,locus:2078087; AT5G27840,AT3G05580 serine threonine-protein phosphatase Serine/threonine-protein phosphatase (EC 3.1.3.16) Q0JMY6 Q0JMY6_ORYSJ Os01g0349400 Os01g0349400 OsJ_01685 OSNPB_010349400 ENOG411EKIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKIF TOPP4 P48484 PP14_ARATH Serine/threonine-protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) FUNCTION: Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro (PubMed:21222654). Acts as positive regulator in the gibberellin (GA) signaling pathway to regulate plant growth and development. Promotes the GA-induced and proteasomal-dependent degradation of the DELLA proteins RGA and GAI by directly binding and dephosphorylating these proteins (PubMed:25010794). Involved in the regulation of phytochrome B (phyB) signaling pathway that controls photomorphogenesis. Promotes the proteasomal-dependent degradation of PIF5 factor by directly binding and dephosphorylating this protein (PubMed:26704640). Involved in the regulation of pavement cell (PC) interdigitation by modulating the auxin efflux carrier PIN1 polarity and endocytic trafficking. Regulates PIN1 polar targeting through direct binding and dephosphorylation. Acts antagonistically with PID in regulating PC development (PubMed:25560878). {ECO:0000269|PubMed:21222654, ECO:0000269|PubMed:25010794, ECO:0000269|PubMed:25560878, ECO:0000269|PubMed:26704640}. 3.1.3.16 36372 Serine/threonine-protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) nucleus [GO:0005634]; protein phosphatase type 1 complex [GO:0000164]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; protein dephosphorylation [GO:0006470]; protein phosphorylation [GO:0006468]; red light signaling pathway [GO:0010161] locus:2063942; AT2G39840 serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411EKIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein phosphatase Serine/threonine-protein phosphatase (EC 3.1.3.16) Q6K9Q5 Q6K9Q5_ORYSJ Os02g0820000 OJ1202_E07.27 OsJ_08899 OSNPB_020820000 P0474F11.8 ENOG411EKIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter Os11g0177400 protein,Os11g0506700 protein A0A0P0XZV4,A0A0P0Y2J6 A0A0P0XZV4_ORYSJ,A0A0P0Y2J6_ORYSJ Os11g0177400 OSNPB_110177400,Os11g0506700 OSNPB_110506700 ENOG411EKIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor ADP- glucose from Glc-1-P and ATP (By similarity) NA NA NA NA NA NA NA ENOG411EKIN F6I1.3 Q9FZ55 Q9FZ55_ARATH At1g16960 (F6I1.3 protein) (Ubiquitin domain-containing protein) 13022 At1g16960 (F6I1.3 protein) (Ubiquitin domain-containing protein) ubiquitin binding [GO:0043130] locus:2015566; AT1G16960 Inherit from euNOG: ubiquitin domain-containing protein NA NA NA NA NA NA NA ENOG411EKV9 NMAT4 Q9CA78 NMAT4_ARATH Nuclear intron maturase 4, mitochondrial (AtnMat4) (EC 3.1.-.-) (Nuclear intron maturase 2 b) (AtnMat2b) DISRUPTION PHENOTYPE: Altered mitochondrial morphology. Impaired seed germination (e.g. many dark and wrinkled seeds in siliques), seedling establishment and development (e.g. abnormal primary root elongation and vegetative growth). Defects in the processing and maturation of various mitochondrial NAD1 introns. Modified respiration phenotypes associated with complex I defects. Seed-specific deficiency in the regulation of carbohydrate metabolism. Small plants requiring sucrose-supplemented medium to survive. {ECO:0000269|PubMed:24506473}. FUNCTION: Nuclear-encoded maturase required for splicing of group-II introns in mitochondria. Involved in NAD1 pre-mRNA processing and maturation of introns 1, 3 and 4. Necessary for mitochondrial biogenesis during early developmental stages. Essential for respiratory holocomplex I biogenesis in mitochondria. {ECO:0000269|PubMed:24506473}. 3.1.-.- 90268 Nuclear intron maturase 4, mitochondrial (AtnMat4) (EC 3.1.-.-) (Nuclear intron maturase 2 b) (AtnMat2b) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; Group II intron splicing [GO:0000373]; intron homing [GO:0006314]; mitochondrial mRNA processing [GO:0090615]; mitochondrial respiratory chain complex I biogenesis [GO:0097031]; mitochondrial RNA modification [GO:1900864]; mitochondrion organization [GO:0007005]; regulation of polysaccharide biosynthetic process [GO:0032885]; seed germination [GO:0009845]; seedling development [GO:0090351] locus:2019140; AT1G74350 Type II intron maturase Os06g0634100 protein (Type II intron maturase-like) (cDNA clone:J033074L10, full insert sequence) Q67V45 Q67V45_ORYSJ Os06g0634100 OsJ_22070 OSJNBa0019I19.1 OSNPB_060634100 P0505A04.41 ENOG411E11Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 Os08g0270900 protein (Fragment) A0A0P0XDW6 A0A0P0XDW6_ORYSJ Os08g0270900 OSNPB_080270900 ENOG411E11X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box FBD LRR-repeat protein At4g03220-like Os07g0113600 protein A0A0P0X1Q3 A0A0P0X1Q3_ORYSJ Os07g0113600 OSNPB_070113600 ENOG411E11Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stm1 Os01g0603000 protein (Putative nuclear RNA binding protein) Q5ZBA9 Q5ZBA9_ORYSJ Os01g0603000 B1085F01.24 OsJ_02509 OSNPB_010603000 P0681B11.4 ENOG411E11U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like Calmodulin-binding protein, putative, expressed (Os12g0556200 protein) Q2QNS3 Q2QNS3_ORYSJ LOC_Os12g36910 Os12g0556200 OsJ_36475 OSNPB_120556200 ENOG411E11T SF1 Q9LU44 SF1_ARATH Splicing factor-like protein 1 (AtSF1) (SF1 homolog protein) DISRUPTION PHENOTYPE: Pleiotropic developmental defects, including early flowering and hypersensitivity to abscisic acid (ABA). Enhanced accumulation of many mRNAs, including heat shock mRNAs, with altered alternative splicing pattern. {ECO:0000269|PubMed:24580679}. FUNCTION: Necessary for the splicing of pre-mRNA. Required during development and for abscisic acid (ABA) responses. {ECO:0000269|PubMed:24580679}. 87050 Splicing factor-like protein 1 (AtSF1) (SF1 homolog protein) nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; pre-mRNA branch point binding [GO:0045131]; zinc ion binding [GO:0008270]; abscisic acid-activated signaling pathway [GO:0009738]; mRNA splicing, via spliceosome [GO:0000398]; response to abscisic acid [GO:0009737]; RNA splicing [GO:0008380] DEVELOPMENTAL STAGE: Accumulates in germinating seeds and in young seedlings. During the reproductive phase, strongly expressed in leaves and flowers. Barely detectable in stems, pedicels and siliques. {ECO:0000269|PubMed:24580679}. TISSUE SPECIFICITY: Expressed in the shoot apex, flowers, stems, leaves, roots and seedling. {ECO:0000269|PubMed:24580679}. locus:2176222; AT5G51300 KH domain Os04g0385700 protein (Fragment) A0A0P0W9E9 A0A0P0W9E9_ORYSJ Os04g0385700 OSNPB_040385700 ENOG411E11W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os06g0112700 protein Q0DF64 Q0DF64_ORYSJ Os06g0112700 Os06g0112700 OsJ_19874 OSNPB_060112700 ENOG411E11V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os02g0602000 protein (Remorin-like protein) (cDNA clone:J033128B04, full insert sequence) Q6K5F9 Q6K5F9_ORYSJ Os02g0602000 Os02g0602000 OJ1669_F01.6 OJ1791_B03.44 OSNPB_020602000 ENOG411E11Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411E11P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0186900 protein (Putative cytochrome P450) (cDNA, clone: J100059N12, full insert sequence),Os02g0186800 protein (Putative cytochrome P450),Os06g0642000 protein,Os01g0377000 protein,Os06g0642300 protein,Os06g0641600 protein Q6ZIG1,Q6ZIG2,A3BDZ2,A0A0P0V315,A0A0P0WZQ4,A0A0P0WZ62 Q6ZIG1_ORYSJ,Q6ZIG2_ORYSJ,A3BDZ2_ORYSJ,A0A0P0V315_ORYSJ,A0A0P0WZQ4_ORYSJ,A0A0P0WZ62_ORYSJ Os02g0186900 OJ1073_F05.20 OJ1115_B01.31 OSNPB_020186900,Os02g0186800 Os02g0186800 OJ1073_F05.19 OJ1115_B01.30 OsJ_05671 OSNPB_020186800,Os06g0642000 OsJ_22116 OSNPB_060642000,Os01g0377000 OSNPB_010377000,Os06g0642300 OSNPB_060642300,Os06g0641600 OSNPB_060641600 ENOG411E11S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411E11R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain Os02g0818000 protein (Fragment) A0A0P0VRK8 A0A0P0VRK8_ORYSJ Os02g0818000 OSNPB_020818000 ENOG411E11M O82324,Q9FPH4 O82324_ARATH,Q9FPH4_ARATH 22 kDa peroxisomal membrane protein (At2g14860) (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein),AT4g33900 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) 28276,28829 22 kDa peroxisomal membrane protein (At2g14860) (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein),AT4g33900 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021] locus:2060459;,locus:505006551; AT2G14860,AT4G33905 PXMP2 4 family protein 4-like Os12g0508100 protein (Peroxisomal membrane protein 22 kDa, putative, expressed) Q2QQ39 Q2QQ39_ORYSJ Os12g0508100 LOC_Os12g32330 OSNPB_120508100 ENOG411E11N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAB Ras-related protein RGP2 (GTP-binding regulatory protein RGP2),Os05g0280200 protein (cDNA clone:J013055N09, full insert sequence) Q40723,B7F5R6 RLGP2_ORYSJ,B7F5R6_ORYSJ RGP2 Os05g0280200 LOC_Os05g20050 P0048F12.8,Os05g0280200 OSNPB_050280200 ENOG411E11I F28O9.250 Q9M2K7,Q9FYR8 Q9M2K7_ARATH,Q9FYR8_ARATH Transmembrane protein (Uncharacterized protein F28O9.250),Emb|CAB68146.1 (Transmembrane protein) (Uncharacterized protein At5g52500) 52937,40995 Transmembrane protein (Uncharacterized protein F28O9.250),Emb|CAB68146.1 (Transmembrane protein) (Uncharacterized protein At5g52500) integral component of membrane [GO:0016021] locus:2082508;,locus:2156697; AT3G57400,AT5G52500 NA NA NA NA NA NA NA NA ENOG411E11H FLA2 Q9SU13 FLA2_ARATH Fasciclin-like arabinogalactan protein 2 FUNCTION: May be a cell surface adhesion protein. 43448 Fasciclin-like arabinogalactan protein 2 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774] TISSUE SPECIFICITY: Expressed mainly in flowers and to a lesser extend in leaves and roots. {ECO:0000269|PubMed:14645732}. locus:2135818; AT4G12730 fasciclin-like arabinogalactan protein Os09g0248100 protein (Putative endosperm specific protein SC3) (cDNA clone:006-304-G08, full insert sequence) (cDNA clone:J013151B22, full insert sequence) Q6K489 Q6K489_ORYSJ Os09g0248100 Os09g0248100 OJ1695_A02.4 OsJ_28509 OSNPB_090248100 P0499G10.19 ENOG411E11K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIRM domain OSJNBa0027H06.15 protein (Os04g0110300 protein),Os09g0124200 protein (Fragment),Os03g0722100 protein (Fragment),Os04g0110300 protein Q7XSW0,Q0J3E6,Q0DP16,A0A0P0W6T6 Q7XSW0_ORYSJ,Q0J3E6_ORYSJ,Q0DP16_ORYSJ,A0A0P0W6T6_ORYSJ Os04g0110300 OsJ_13539 OSJNBa0027H06.15 OSNPB_040110300,Os09g0124200 Os09g0124200 OSNPB_090124200,Os03g0722100 OSNPB_030722100,Os04g0110300 OSNPB_040110300 ENOG411E11J PCMP-H6 P93011 PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760 64858 Pentatricopeptide repeat-containing protein At2g33760 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2057574; AT2G33760 Pentatricopeptide repeat-containing protein Os12g0181900 protein (Pentatricopeptide, putative, expressed) Q2QWV0 Q2QWV0_ORYSJ LOC_Os12g08140 Os12g0181900 OsJ_35439 OSNPB_120181900 ENOG411E11E BGAL5 Q9MAJ7,A0A1P8AMY9 BGAL5_ARATH,A0A1P8AMY9_ARATH Beta-galactosidase 5 (Lactase 5) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) ARA:AT1G45130-MONOMER; 3.2.1.23; 3.2.1.23 81444,72705 Beta-galactosidase 5 (Lactase 5) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975],beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:17466346}. locus:2028265; AT1G45130 beta-galactosidase NA NA NA NA NA NA NA ENOG411E11D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain O-methyltransferase family protein, expressed (Os11g0306400 protein) (cDNA clone:001-208-C11, full insert sequence) (cDNA clone:006-203-H05, full insert sequence) Q2R6G9 Q2R6G9_ORYSJ Os11g0306400 LOC_Os11g20090 Os11g0306400 OSNPB_110306400 ENOG411E11G Q9XIB3 Q9XIB3_ARATH At1g49470 (F13F21.10 protein) (Transmembrane epididymal protein (DUF716)) 33619 At1g49470 (F13F21.10 protein) (Transmembrane epididymal protein (DUF716)) integral component of membrane [GO:0016021] locus:2010252; AT1G49470 Family of unknown function (DUF716) Os08g0462900 protein (Plant viral-response family protein-like) (cDNA, clone: J100088K10, full insert sequence),Os02g0167775 protein Q6YUB6,A0A0P0VFD1 Q6YUB6_ORYSJ,A0A0P0VFD1_ORYSJ Os08g0462900 Os08g0462900 B1111C03.21 B1116H04.9 OSNPB_080462900,Os02g0167775 OSNPB_020167775 ENOG411E11F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411E11A IMPA4 O80480 IMPA4_ARATH Importin subunit alpha-4 (IMPa-4) Decreased susceptibility to Agrobacterium-mediated transformation. Resistant to Agrobacterium transformation-S. Gelvin-2008 FUNCTION: Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope. Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium and is essential for Agrobacterium-mediated root transformation. {ECO:0000269|PubMed:18836040}. 59446 Importin subunit alpha-4 (IMPa-4) cytosol [GO:0005829]; host cell [GO:0043657]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; host response to induction by symbiont of tumor, nodule or growth in host [GO:0080034]; NLS-bearing protein import into nucleus [GO:0006607]; symbiont intracellular protein transport in host [GO:0030581] locus:2195351; AT1G09270 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (By similarity) NA NA NA NA NA NA NA ENOG411E11C MSN9.9 Q9LRS3,Q9FL13,F4IYZ7 Q9LRS3_ARATH,Q9FL13_ARATH,F4IYZ7_ARATH RNA ligase/cyclic nucleotide phosphodiesterase family protein (Uncharacterized protein At3g28140/MMG15_15),At5g40190 (RNA ligase/cyclic nucleotide phosphodiesterase family protein) (Uncharacterized protein At5g40190),RNA ligase/cyclic nucleotide phosphodiesterase family protein 20637,20617,18705 RNA ligase/cyclic nucleotide phosphodiesterase family protein (Uncharacterized protein At3g28140/MMG15_15),At5g40190 (RNA ligase/cyclic nucleotide phosphodiesterase family protein) (Uncharacterized protein At5g40190),RNA ligase/cyclic nucleotide phosphodiesterase family protein ligase activity [GO:0016874] locus:2091378;,locus:2173792; AT3G28140,AT5G40190 NA Os09g0375400 protein (Putative calmodulin-binding protein) (cDNA, clone: J100043H15, full insert sequence) Q6H5G6 Q6H5G6_ORYSJ Os09g0375400 Os09g0375400 OSNPB_090375400 P0711A01.7 ENOG411E11B Q9S733,Q9LY43 PP196_ARATH,PP283_ARATH Pentatricopeptide repeat-containing protein At2g40240, mitochondrial,Pentatricopeptide repeat-containing protein At3g56030, mitochondrial 39881,39659 Pentatricopeptide repeat-containing protein At2g40240, mitochondrial,Pentatricopeptide repeat-containing protein At3g56030, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2063053;,locus:2082023; AT2G40240,AT3G56030 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E119 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like Os02g0572900 protein (Putative zinc finger protein ID1) Q6YXC5 Q6YXC5_ORYSJ Os02g0572900 Os02g0572900 OSJNBb0046L23.5 OSNPB_020572900 ENOG411E118 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Elongation factor Tu domain 2 NA NA NA NA NA NA NA ENOG411E115 Q94JR2 Q94JR2_ARATH AT5g45310/K9E15_9 (Coiled-coil protein) 39799 AT5g45310/K9E15_9 (Coiled-coil protein) integral component of membrane [GO:0016021] locus:2158460; AT5G45310 NA Os01g0962100 protein,Os04g0480050 protein Q5JMS7,A0A0P0WBL6 Q5JMS7_ORYSJ,A0A0P0WBL6_ORYSJ Os01g0962100 OSNPB_010962100 P0483G10.22,Os04g0480050 OSNPB_040480050 ENOG411E114 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase Os10g0534500 protein (Protein kinase domain containing protein, expressed),Os03g0124200 protein (Protein kinase domain containing protein, expressed),Os03g0124200 protein (Fragment) Q336X4,Q10SF5,A0A0P0VSD7 Q336X4_ORYSJ,Q10SF5_ORYSJ,A0A0P0VSD7_ORYSJ LOC_Os10g39010 Os10g0534500 OSNPB_100534500,LOC_Os03g03280 Os03g0124200 OsJ_09232 OSNPB_030124200,Os03g0124200 OSNPB_030124200 ENOG411E117 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0491000 protein (Fragment),Os08g0491100 protein (Fragment) A0A0P0XHF9,A0A0N7KQ23 A0A0P0XHF9_ORYSJ,A0A0N7KQ23_ORYSJ Os08g0491000 OSNPB_080491000,Os08g0491100 OSNPB_080491100 ENOG411E116 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nitrate transporter NA NA NA NA NA NA NA ENOG411E111 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E110 SR45A,SR45a Q84TH4,A0A1P8AVR1,A0A1P8AVT0 SR45A_ARATH,A0A1P8AVR1_ARATH,A0A1P8AVT0_ARATH Serine/arginine-rich splicing factor SR45a (At-SR45A) (AtSR45a) (Protein TRANSFORMER2-like) (atTra2),RNA-binding (RRM/RBD/RNP motifs) family protein FUNCTION: Probable splicing factor involved in constitutive and/or alternative splicing events. May bridge the 5' and 3' components of the spliceosome. {ECO:0000269|PubMed:19238562}. MISCELLANEOUS: The splicing patterns of the pre-mRNA are similar throughout the developmental period, but change in response to various types of stress treatment (PubMed:17556373, PubMed:22291167). {ECO:0000305|PubMed:17556373, ECO:0000305|PubMed:22291167}. 44978,26752,23163 Serine/arginine-rich splicing factor SR45a (At-SR45A) (AtSR45a) (Protein TRANSFORMER2-like) (atTra2),RNA-binding (RRM/RBD/RNP motifs) family protein nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; nucleic acid binding [GO:0003676]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; response to high light intensity [GO:0009644]; RNA splicing [GO:0008380],integral component of membrane [GO:0016021]; RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in leaves, stems and roots. {ECO:0000269|PubMed:17556373}. locus:2025092; AT1G07350 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E113 O82389 O82389_ARATH At2g29660 (Expressed protein) (Uncharacterized protein At2g29660) (Zinc finger (C2H2 type) family protein) 41604 At2g29660 (Expressed protein) (Uncharacterized protein At2g29660) (Zinc finger (C2H2 type) family protein) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2060684; AT2G29660 zinc finger Os03g0264600 protein (Fragment) A0A0N7KGZ5 A0A0N7KGZ5_ORYSJ Os03g0264600 OSNPB_030264600 ENOG411E112 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ClpB_D2-small Os05g0533900 protein (Fragment) A0A0P0WPU2 A0A0P0WPU2_ORYSJ Os05g0533900 OSNPB_050533900 ENOG411E4AY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os01g0786500 protein (Fragment) A0A0P0V928 A0A0P0V928_ORYSJ Os01g0786500 OSNPB_010786500 ENOG411E4AT F9G14_20 Q9LZ14 Q9LZ14_ARATH At5g02710 (Uncharacterized protein At5g02710) (Uncharacterized protein At5g02710; F9G14_20) (Uncharacterized protein F9G14_20) (Zinc/iron-chelating domain protein) 19623 At5g02710 (Uncharacterized protein At5g02710) (Uncharacterized protein At5g02710; F9G14_20) (Uncharacterized protein F9G14_20) (Zinc/iron-chelating domain protein) locus:2151321; AT5G02710 Pfam:UPF0153 Os03g0363400 protein Q10L09 Q10L09_ORYSJ LOC_Os03g24844 Os03g0363400 OSNPB_030363400 ENOG411E4AR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0236600 protein) (cDNA clone:001-116-A10, full insert sequence),Os05g0549300 protein,Os05g0549400 protein,Os05g0549500 protein Q2QVB3,Q0DG75,A0A0P0WQ99,A0A0P0WQQ4 Q2QVB3_ORYSJ,Q0DG75_ORYSJ,A0A0P0WQ99_ORYSJ,A0A0P0WQQ4_ORYSJ Os12g0236600 LOC_Os12g13400 Os12g0236600 OSNPB_120236600,Os05g0549300 Os05g0549300 OsJ_19444 OSNPB_050549300,Os05g0549400 OSNPB_050549400,Os05g0549500 OSNPB_050549500 ENOG411E4AS MBK5.17 Q9FFP5 Q9FFP5_ARATH Nucleic acid-binding, OB-fold-like protein 15363 Nucleic acid-binding, OB-fold-like protein locus:2160614; AT5G63690 Inherit from KOG: nucleic acid binding protein NA NA NA NA NA NA NA ENOG411EB1V Q9LZY4 FB213_ARATH F-box protein At3g60790 55927 F-box protein At3g60790 locus:2101791; AT3G60790 at3g60790 (e NA NA NA NA NA NA NA ENOG411EB1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EB1T PBRP2,T12H20.13 Q9LIA6,O82494 PBRP2_ARATH,O82494_ARATH Plant-specific TFIIB-related protein 2 (AtPBRP2) (TFIIB-related protein PBRP2),T12H20.13 protein (TFIIB6) (Transcription factor IIB (TFIIB) family protein) (Uncharacterized protein AT4g10680) (Uncharacterized protein T4F9.140) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but embryos of mutant plants display a reduced rate of endosperm proliferation during the syncytial phase of endosperm development. {ECO:0000269|PubMed:21390310}. FUNCTION: Plant-specific TFIIB-related protein involved in the regulation of endosperm proliferation during the syncytial phase of endosperm development. Does not contribute to RNA polymerase IV or V activities in reproductive tissues. {ECO:0000269|PubMed:21390310}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 37719,19869 Plant-specific TFIIB-related protein 2 (AtPBRP2) (TFIIB-related protein PBRP2),T12H20.13 protein (TFIIB6) (Transcription factor IIB (TFIIB) family protein) (Uncharacterized protein AT4g10680) (Uncharacterized protein T4F9.140) nucleus [GO:0005634]; metal ion binding [GO:0046872]; TBP-class protein binding [GO:0017025]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; endosperm development [GO:0009960]; regulation of transcription, DNA-templated [GO:0006355]; response to cadmium ion [GO:0046686]; syncytium formation by mitosis without cytokinesis [GO:0000769],metal ion binding [GO:0046872]; TBP-class protein binding [GO:0017025]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Specifically expressed in reproductive organs and seeds. {ECO:0000269|PubMed:21390310}. locus:2093852;,locus:2139227; AT3G29380,AT4G10680 transcription factor IIB (TFIIB) family protein NA NA NA NA NA NA NA ENOG411EB1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF620) NA NA NA NA NA NA NA ENOG411EB1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stage II sporulation protein E (SpoIIE) NA NA NA NA NA NA NA ENOG411EB1S Q9SSP9,Q9SSP7,Q9FHN1,A0A1P8BAL0,A0A1P8AN28,A0A1P8AP20,A0A1P8BG67,A0A1P8BG85,F4IGQ3,A0A1P8BG95,F4K528,F4IGQ2,F4K529 Q9SSP9_ARATH,Q9SSP7_ARATH,Q9FHN1_ARATH,A0A1P8BAL0_ARATH,A0A1P8AN28_ARATH,A0A1P8AP20_ARATH,A0A1P8BG67_ARATH,A0A1P8BG85_ARATH,F4IGQ3_ARATH,A0A1P8BG95_ARATH,F4K528_ARATH,F4IGQ2_ARATH,F4K529_ARATH F6D8.33 (Ubiquitin carboxyl-terminal hydrolase-related protein),F6D8.35 protein (Ubiquitin carboxyl-terminal hydrolase-related protein),Gb|AAD55616.1 (Ubiquitin carboxyl-terminal hydrolase-related protein),Ubiquitin carboxyl-terminal hydrolase-related protein 129848,129750,132229,129685,129622,129475,137681,129547,127342,135444,124648,127713,129323 F6D8.33 (Ubiquitin carboxyl-terminal hydrolase-related protein),F6D8.35 protein (Ubiquitin carboxyl-terminal hydrolase-related protein),Gb|AAD55616.1 (Ubiquitin carboxyl-terminal hydrolase-related protein),Ubiquitin carboxyl-terminal hydrolase-related protein thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579],cytosol [GO:0005829]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579],hydrolase activity [GO:0016787],nucleic acid binding [GO:0003676]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579],hydrolase activity [GO:0016787]; nucleic acid binding [GO:0003676] locus:2035104;,locus:2018139;,locus:2153157;,locus:2042016;,locus:2156156;,locus:2042072;,locus:2156161; AT1G52450,AT1G52430,AT5G51530,AT2G27650,AT5G61940,AT2G27630,AT5G61950 ubiquitin carboxyl-terminal hydrolase-related protein NA NA NA NA NA NA NA ENOG411EB1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EB1Q A0A1P8AZM7,F4IFA4 A0A1P8AZM7_ARATH,F4IFA4_ARATH ADP-glucose pyrophosphorylase family protein 43781,44938 ADP-glucose pyrophosphorylase family protein nucleotidyltransferase activity [GO:0016779]; biosynthetic process [GO:0009058],nucleotidyltransferase activity [GO:0016779]; biosynthetic process [GO:0009058]; regulation of L-ascorbic acid biosynthetic process [GO:2000082] locus:2049188; AT2G04650 ADP-glucose pyrophosphorylase family protein NA NA NA NA NA NA NA ENOG411EB1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Papain family cysteine protease NA NA NA NA NA NA NA ENOG411EB1X C0LGD6,A0A1P8AQG2 Y1570_ARATH,A0A1P8AQG2_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase protein 2.7.11.1 94981,98599 Probable LRR receptor-like serine/threonine-protein kinase At1g05700 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2031923; AT1G05700 STYKc NA NA NA NA NA NA NA ENOG411EB1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sensory histidine protein kinase NA NA NA NA NA NA NA ENOG411EB1G UGT79B7,UGT79B4,UGT79B8,UGT79B5,UGT79B11,UGT79B9,UGT79B10 Q9M0P3,Q9LJA6,O81010,Q9LPS8,Q9XIQ4,Q9FN28,Q9XIQ5,A0A1P8AYN6,A0A1I9LQX5 U79B7_ARATH,U79B4_ARATH,U79B8_ARATH,U79B5_ARATH,U7B11_ARATH,U79B9_ARATH,U7B10_ARATH,A0A1P8AYN6_ARATH,A0A1I9LQX5_ARATH UDP-glycosyltransferase 79B7 (EC 2.4.1.-),UDP-glycosyltransferase 79B4 (EC 2.4.1.-),UDP-glycosyltransferase 79B8 (EC 2.4.1.-),UDP-glycosyltransferase 79B5 (EC 2.4.1.-),UDP-glycosyltransferase 79B11 (EC 2.4.1.-),UDP-glycosyltransferase 79B9 (EC 2.4.1.-),UDP-glycosyltransferase 79B10 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein ARA:AT4G09500-MONOMER;,ARA:AT3G29630-MONOMER;,ARA:AT2G22930-MONOMER;,ARA:AT1G50580-MONOMER;,ARA:AT1G64920-MONOMER;,ARA:AT5G53990-MONOMER;,ARA:AT1G64910-MONOMER; 2.4.1.- 49600,50503,49624,50465,50554,50545,50384,32681,47499 UDP-glycosyltransferase 79B7 (EC 2.4.1.-),UDP-glycosyltransferase 79B4 (EC 2.4.1.-),UDP-glycosyltransferase 79B8 (EC 2.4.1.-),UDP-glycosyltransferase 79B5 (EC 2.4.1.-),UDP-glycosyltransferase 79B11 (EC 2.4.1.-),UDP-glycosyltransferase 79B9 (EC 2.4.1.-),UDP-glycosyltransferase 79B10 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2133727;,locus:2093635;,locus:2059181;,locus:2008001;,locus:2010816;,locus:2154734;,locus:2010801; AT4G09500,AT3G29630,AT2G22930,AT1G50580,AT1G64920,AT5G53990,AT1G64910 transferase activity transferring hexosyl groups NA NA NA NA NA NA NA ENOG411EB1D MYB28 Q9SPG2 MYB28_ARATH Transcription factor MYB28 (Myb-related protein 28) (AtMYB28) (Protein HIGH ALIPHATIC GLUCOSINOLATE 1) (Protein PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1) DISRUPTION PHENOTYPE: Low levels of aliphatic glucosinolates and decreased repressing effect of brassinosteroid on glucosinolates. {ECO:0000269|PubMed:23580754}. GSL content also decreased in mutant seeds.,No visible phenotype.,The mutant contained only 17-33% of GSLs with 4C or 5C Met side-chains [4-methylthiobutyl GSL (4MTB) 4-methylsulfinylbutyl GSL (4MSOB) 5-methylthiopentyl GSL (5MTP) and 5-methylsulfinylpentyl (5MSOP)] 1.7% of GSLs with a 6C chain [6-methylthiohexyl GSL (6MTH) and 6-methylsulfinylhexyl GSL (6MSOH)] and 0.3?0.7% of GSLs with 7C or 8C chains [7-methylsulfinylheptyl (7MTH) 7-methylsulfinylheptyl (7MSOH) 8-methylthiooctyl GSL (8MTH) and 8-methylsulfinyloctyl GSL (8MSOO)] as the wild-type plant. Low glucosinolate levels in seeds-K. Saito-2007 FUNCTION: Major regulator of short-chained aliphatic glucosinolates (GLSs) biosynthesis. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. 41134 Transcription factor MYB28 (Myb-related protein 28) (AtMYB28) (Protein HIGH ALIPHATIC GLUCOSINOLATE 1) (Protein PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cellular response to sulfur starvation [GO:0010438]; defense response to fungus [GO:0050832]; induced systemic resistance [GO:0009682]; regulation of glucosinolate biosynthetic process [GO:0010439]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to bacterium [GO:0009617]; response to gibberellin [GO:0009739]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First present in stems, petioles and the main veins of true leaves in young seedlings. Later accumulates in leaves and present in lateral roots. During transition from the vegetative to the generative stage, preferentially expressed in inflorescence. {ECO:0000269|PubMed:17521412}. TISSUE SPECIFICITY: Expressed in generative organs, mature leaves and trichomes. {ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:23115560}. locus:2163233; AT5G61420 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EB1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain Os08g0227100 protein (Speckle-type POZ protein-like) (cDNA clone:J023100C18, full insert sequence) (cDNA clone:J033130G24, full insert sequence),Os08g0227200 protein (Putative speckle-type POZ protein) (cDNA clone:J023031F24, full insert sequence) Q8H4G2,Q8H4G1 Q8H4G2_ORYSJ,Q8H4G1_ORYSJ OJ1221_H04.133 Os08g0227100 OsJ_26478 OSNPB_080227100,OJ1221_H04.134 Os08g0227200 OSNPB_080227200 ENOG411EB1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heme oxygenase NA NA NA NA NA NA NA ENOG411EB1C KOR3,GH9A3 Q9STW8,A0A1P8B8Q5,A0A1P8B8R5 GUN21_ARATH,A0A1P8B8Q5_ARATH,A0A1P8B8R5_ARATH Endoglucanase 21 (EC 3.2.1.4) (Endo-1,4-beta glucanase 21),Glycosyl hydrolase 9A3 ARA:AT4G24260-MONOMER; 3.2.1.4 69585,52118,55356 Endoglucanase 21 (EC 3.2.1.4) (Endo-1,4-beta glucanase 21),Glycosyl hydrolase 9A3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in conductive tissues of young roots, cotyledons, rosette leaves, cauline leaves and sepals. Expressed in the leaf trichome support cells. {ECO:0000269|PubMed:11488474}. locus:2135997; AT4G24260 Glycosyl hydrolase family 9 NA NA NA NA NA NA NA ENOG411EB1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Paraquat-inducible protein A NA NA NA NA NA NA NA ENOG411EB1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Leucine Rich Repeat family protein, expressed (Os11g0640300 protein),Os11g0640300 protein (Fragment) Q2R0M5,A0A0P0Y546 Q2R0M5_ORYSJ,A0A0P0Y546_ORYSJ LOC_Os11g42070 Os11g0640300 OsJ_34565 OSNPB_110640300,Os11g0640300 OSNPB_110640300 ENOG411EB1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os09g0441625 protein B9G3V1 B9G3V1_ORYSJ Os09g0441625 OsJ_29527 OSNPB_090441625 ENOG411EB1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EB1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 32 C terminal Beta-fructofuranosidase, insoluble isoenzyme 4 (EC 3.2.1.26) (Cell wall beta-fructosidase 4) (Invertase 4) (OsCIN4) (Sucrose hydrolase 4),Os01g0966700 protein (Fragment) Q5JJV0,A0A0P0VDB2 INV4_ORYSJ,A0A0P0VDB2_ORYSJ CIN4 Os01g0966700 LOC_Os01g73580 OsJ_04889 P0458E05.32,Os01g0966700 OSNPB_010966700 FUNCTION: May play a role in sucrose partitioning during seed development and in stress response. ENOG411EB1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os01g0905300 protein A0A0P0VBP2 A0A0P0VBP2_ORYSJ Os01g0905300 OSNPB_010905300 ENOG411EB16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411EB17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF815) NA NA NA NA NA NA NA ENOG411EB14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L11 methyltransferase (PrmA) NA NA NA NA NA NA NA ENOG411EB15 RABH1C Q9SMR4 RAH1C_ARATH Ras-related protein RABH1c (AtRABH1c) FUNCTION: Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity). {ECO:0000250}. R-ATH-6798695;R-ATH-6811438;R-ATH-8854214; 23681 Ras-related protein RABH1c (AtRABH1c) cytosol [GO:0005829]; Golgi membrane [GO:0000139]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2140045; AT4G39890 RAB NA NA NA NA NA NA NA ENOG411EB12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Malate/L-lactate dehydrogenase NA NA NA NA NA NA NA ENOG411EB13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alg9-like mannosyltransferase family NA NA NA NA NA NA NA ENOG411EB10 GSTU1,GSTU2 Q9ZW30,Q9ZW29 GSTU1_ARATH,GSTU2_ARATH Glutathione S-transferase U1 (AtGSTU1) (EC 2.5.1.18) (GST class-tau member 1) (Glutathione S-transferase 19),Glutathione S-transferase U2 (AtGSTU2) (EC 2.5.1.18) (GST class-tau member 2) (Glutathione S-transferase 20) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT2G29490-MONOMER;,ARA:AT2G29480-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25914,26173 Glutathione S-transferase U1 (AtGSTU1) (EC 2.5.1.18) (GST class-tau member 1) (Glutathione S-transferase 19),Glutathione S-transferase U2 (AtGSTU2) (EC 2.5.1.18) (GST class-tau member 2) (Glutathione S-transferase 20) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2042987;,locus:2042997; AT2G29490,AT2G29480 Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EB11 A2RVQ4,A0A1P8AQF2,A0A1P8AQF6 A2RVQ4_ARATH,A0A1P8AQF2_ARATH,A0A1P8AQF6_ARATH At1g11500 (Transmembrane protein, putative (DUF1218)),Transmembrane protein, putative (DUF1218) 20045,20604,17245 At1g11500 (Transmembrane protein, putative (DUF1218)),Transmembrane protein, putative (DUF1218) integral component of membrane [GO:0016021] locus:2200071; AT1G11500 Protein of unknown function (DUF1218) NA NA NA NA NA NA NA ENOG411EB18 SCE1 Q42551 SCE1_ARATH SUMO-conjugating enzyme SCE1 (EC 6.3.2.-) (Protein EMBRYO DEFECTIVE 1637) (Protein hus5 homolog) (SUMO-conjugating enzyme 1) (AtSCE1) DISRUPTION PHENOTYPE: Embryonic lethal. {ECO:0000269|PubMed:17644626}. Embryo defective; Gametophyte defective (inferred)-D. Meinke-2003 FUNCTION: SUMO-conjugating enzyme that accepts the SUMO proteins from the E1 SUMO-activating heterodimer SAE1/SAE2 and catalyzes its covalent attachment to other proteins with the E3 SUMO ligases SIZ1 and MMS21. Associates with SIZ1 for sumoylation of the transcription factor GTE3. {ECO:0000269|PubMed:17644626, ECO:0000269|PubMed:18502747, ECO:0000269|PubMed:19682286}. PATHWAY: Protein modification; protein sumoylation. 6.3.2.- 17986 SUMO-conjugating enzyme SCE1 (EC 6.3.2.-) (Protein EMBRYO DEFECTIVE 1637) (Protein hus5 homolog) (SUMO-conjugating enzyme 1) (AtSCE1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; SUMO transferase activity [GO:0019789]; embryo development ending in seed dormancy [GO:0009793]; protein sumoylation [GO:0016925]; response to abscisic acid [GO:0009737] locus:2095838; AT3G57870 Ubiquitin-conjugating enzyme Os10g0536000 protein (Putative ubiquitin-conjugating enzyme) (Ubiquitin-conjugating enzyme E2 I, putative, expressed) (Ubiquitin-conjugating protein) (cDNA clone:001-111-C09, full insert sequence) (cDNA clone:J023090H15, full insert sequence),Os03g0123100 protein (Putative ubiquitin-conjugating enzyme) (Ubiquitin-conjugating enzyme E2 I, putative, expressed) (cDNA clone:001-046-B02, full insert sequence) (cDNA clone:J033092H08, full insert sequence) Q8W2X7,Q8H8G9 Q8W2X7_ORYSJ,Q8H8G9_ORYSJ OSJNBb0060I05.2 LOC_Os10g39120 Os10g0536000 OsJ_32281 OSNPB_100536000,OJ1126B12.12 LOC_Os03g03130 Os03g0123100 OsJ_09225 OSNPB_030123100 ENOG411EA25 F4IUJ2 F4IUJ2_ARATH Mitochondrial substrate carrier family protein 41932 Mitochondrial substrate carrier family protein chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; S-adenosyl-L-methionine transmembrane transporter activity [GO:0000095]; mitochondrial transport [GO:0006839] locus:2066266; AT2G26360 Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EA26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Predicted membrane protein (DUF2214) NA NA NA NA NA NA NA ENOG411EA27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411EA20 F4IUF0 F4IUF0_ARATH Toll-Interleukin-Resistance (TIR) domain family protein 36196 Toll-Interleukin-Resistance (TIR) domain family protein integral component of membrane [GO:0016021]; signal transduction [GO:0007165] locus:1006230150; AT2G20142 TIR NA NA NA NA NA NA NA ENOG411EA21 LIP1 Q1PDW3 LIPG1_ARATH Receptor-like kinase LIP1 (EC 2.7.11.-) (Protein LOST IN POLLEN TUBE GUIDANCE 1) (AtLIP1) DISRUPTION PHENOTYPE: No visible phenotype. Lip1 and lip2 double mutants have a reduced male transmission. {ECO:0000269|PubMed:23684977}. FUNCTION: Involved in pollen tube guidance into micropyle. Participates in perception of the ovule-secreted peptide signal LURE1. {ECO:0000269|PubMed:23684977}. R-ATH-446652; 2.7.11.- 71552 Receptor-like kinase LIP1 (EC 2.7.11.-) (Protein LOST IN POLLEN TUBE GUIDANCE 1) (AtLIP1) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; pollen tube tip [GO:0090404]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; pollen tube guidance [GO:0010183]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in mature pollen and in germinating pollen tubes. {ECO:0000269|PubMed:23684977}. locus:2171342; AT5G16500 STYKc NA NA NA NA NA NA NA ENOG411EA2T ABCA7,ABCA3 Q9STT5,Q1PEH6 AB7A_ARATH,AB3A_ARATH ABC transporter A family member 7 (ABC transporter ABCA.7) (AtABCA7) (Probable ABC2 homolog 6),ABC transporter A family member 3 (ABC transporter ABCA.3) (AtABCA3) (ABC2 homolog 2) ARA:AT3G47780-MONOMER;,ARA:AT3G47740-MONOMER; R-ATH-1369062;R-ATH-382556; 105048,105337 ABC transporter A family member 7 (ABC transporter ABCA.7) (AtABCA7) (Probable ABC2 homolog 6),ABC transporter A family member 3 (ABC transporter ABCA.3) (AtABCA3) (ABC2 homolog 2) integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; lipid transport [GO:0006869],integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; lipid transport [GO:0006869] locus:2100322;,locus:2100377; AT3G47780,AT3G47740 ABC transporter NA NA NA NA NA NA NA ENOG411EA2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase NA NA NA NA NA NA NA ENOG411EA2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EA2S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DZTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Class III peroxidase Peroxidase (EC 1.11.1.7),Os07g0639500 protein Q5U1Q1,Q5U1P7,Q10KW1,A0A0P0X9E4,A0A0P0VXU6 Q5U1Q1_ORYSJ,Q5U1P7_ORYSJ,Q10KW1_ORYSJ,A0A0P0X9E4_ORYSJ,A0A0P0VXU6_ORYSJ prx42 Os03g0368000 LOC_Os03g25280 OSJNBa0013M12.11 OSNPB_030368000,prx46 LOC_Os03g25340 Os03g0369000 OSJNBa0013M12.3 OSNPB_030369000,LOC_Os03g25300 Os03g0368300 OsJ_10982 OSJNBa0013M12.2 OSNPB_030368300,Os07g0639500 OSNPB_070639500,Os03g0369600 OSNPB_030369600 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. {ECO:0000256|SAAS:SAAS00709921}. ENOG411DZTX Q9LFS1,Q8RWE0,A0A1P8BBG8,A0A1P8BBH8,B3H6N4 Q9LFS1_ARATH,Q8RWE0_ARATH,A0A1P8BBG8_ARATH,A0A1P8BBH8_ARATH,B3H6N4_ARATH Mental retardation GTPase activating protein (Uncharacterized protein F1N13_170),Mental retardation GTPase activating protein (Uncharacterized protein At5g16030),Mental retardation GTPase activating protein 39076,39004,29058,28589,39854 Mental retardation GTPase activating protein (Uncharacterized protein F1N13_170),Mental retardation GTPase activating protein (Uncharacterized protein At5g16030),Mental retardation GTPase activating protein locus:2146137; AT5G16030 NA NA NA NA NA NA NA NA ENOG411DZTY IPT9 Q9C5J6,F4K2Q7 IPT9_ARATH,F4K2Q7_ARATH tRNA dimethylallyltransferase 9 (EC 2.5.1.75) (Isopentenyl-diphosphate: tRNA isopentenyltransferase 9) (AtIPT9) (IPP transferase 9) (IPPT 9),Isopentenyltransferase 9 DISRUPTION PHENOTYPE: No visible phenotype, due the redundancy with IPT2. Often chlorotic. {ECO:0000269|PubMed:17062755}. Levels of iP-type and tZ-type cytokinins are unaffected in this mutant.,This mutant can be chlorotic.,cZR and cZRMP are almost undetectable in this mutant.,Levels of cZR and cZRMP are reduced in this mutant compared to those of wild type.,No visible phenotype.,The levels of iPR contained in tRNA are decreased to 4% of those found in wild type. Chlorotic; Low cytokinin levels-T. Kakimoto-2006 FUNCTION: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis. {ECO:0000269|PubMed:11313355, ECO:0000269|PubMed:17062755}. ARA:AT5G20040-MONOMER; 2.5.1.75 52264,52922 tRNA dimethylallyltransferase 9 (EC 2.5.1.75) (Isopentenyl-diphosphate: tRNA isopentenyltransferase 9) (AtIPT9) (IPP transferase 9) (IPPT 9),Isopentenyltransferase 9 mitochondrion [GO:0005739]; ATP binding [GO:0005524]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400],ATP binding [GO:0005524]; transferase activity [GO:0016740]; tRNA processing [GO:0008033] TISSUE SPECIFICITY: Expressed ubiquitously, with highest expression in proliferating tissues. {ECO:0000269|PubMed:14675438}. locus:2147735; AT5G20040 tRNA dimethylallyltransferase NA NA NA NA NA NA NA ENOG411DZTV EPSIN2,EPSIN3 Q67YI9,Q93YP4 EPN2_ARATH,EPN3_ARATH Clathrin interactor EPSIN 2 (EPSIN-related 2),Clathrin interactor EPSIN 3 (EPSIN-related 3) FUNCTION: May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly (By similarity). Binds to membranes enriched in phosphatidylinositol 3-phosphate (PtdIns(3)P). Plays an important role in protein trafficking. {ECO:0000250, ECO:0000269|PubMed:17277094}.,FUNCTION: Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly (By similarity). {ECO:0000250}. R-ATH-8856825; 95478,109694 Clathrin interactor EPSIN 2 (EPSIN-related 2),Clathrin interactor EPSIN 3 (EPSIN-related 3) clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; clathrin binding [GO:0030276]; phospholipid binding [GO:0005543]; protein transport [GO:0015031],clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; protein transport [GO:0015031] locus:2040981;,locus:2081167; AT2G43160,AT3G59290 Clathrin interactor EPSIN Os02g0806600 protein (Putative epsin 2a) (cDNA clone:J013110A10, full insert sequence),Os02g0806600 protein (Fragment) Q6K8F1,A0A0P0VR61 Q6K8F1_ORYSJ,A0A0P0VR61_ORYSJ OJ1111_C07.17-1 Os02g0806600 OSNPB_020806600,Os02g0806600 OSNPB_020806600 ENOG411DZTU CWINV3,FRUCT5 Q67XZ3,A0A1P8ANV4,F4HYP3,B6EUC8 INV3_ARATH,A0A1P8ANV4_ARATH,F4HYP3_ARATH,B6EUC8_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV3 (6-fructan exohydrolase) (6-FEH) (EC 3.2.1.80) (Beta-fructofuranosidase 5) (AtFruct5) (Cell wall beta-fructosidase 3) (Cell wall invertase 3) (AtcwINV3) (Sucrose hydrolase 3),Beta-fructofuranosidase 5 FUNCTION: 6-fructan exohydrolase that can use phlein, levan, neokestose, levanbiose, 6-kestose, and 1-kestose as substrates. {ECO:0000269|Ref.6}. ARA:AT1G55120-MONOMER; 3.2.1.80; 3.2.1.80 67068,62389,65171,62698 Beta-fructofuranosidase, insoluble isoenzyme CWINV3 (6-fructan exohydrolase) (6-FEH) (EC 3.2.1.80) (Beta-fructofuranosidase 5) (AtFruct5) (Cell wall beta-fructosidase 3) (Cell wall invertase 3) (AtcwINV3) (Sucrose hydrolase 3),Beta-fructofuranosidase 5 apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; fructan beta-fructosidase activity [GO:0051669]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers, and seeds. {ECO:0000269|PubMed:12508063, ECO:0000269|PubMed:16339783}. locus:2205677; AT1G55120 beta-fructofuranosidase NA NA NA NA NA NA NA ENOG411DZTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: spindle assembly 6 homolog (C. elegans) NA NA NA NA NA NA NA ENOG411DZTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 93G1 (EC 1.14.13.-) (Flavone synthase II) (OsFNSII) Q0JFI2 C93G1_ORYSJ CYP93G1 Os04g0101400 LOC_Os04g01140 B1160F02.15 OsJ_13492 OSJNBa0068L06.2 FUNCTION: Functions as flavone synthase II (FNSII) that catalyzes the direct conversion of flavanones to flavones. In vitro, can desaturate naringenin and eriodictyol to apigenin and luteolin, respectively. Acts as a key branch point enzyme that channels flavanones to the biosynthesis of tricin O-linked conjugates. {ECO:0000269|PubMed:24843076}. ENOG411DZTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411DZTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os01g0735500 protein Q0JJJ6,A0A0P0V7W3 Q0JJJ6_ORYSJ,A0A0P0V7W3_ORYSJ Os01g0735300 Os01g0735300 OSNPB_010735300,Os01g0735500 OSNPB_010735500 ENOG411DZTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0147800 protein (cDNA clone:002-104-H02, full insert sequence),Os05g0147700 protein (Fragment),Os02g0542901 protein Q6ASQ8,A0A0P0WHX3,A0A0P0VK62 Q6ASQ8_ORYSJ,A0A0P0WHX3_ORYSJ,A0A0P0VK62_ORYSJ Os05g0147800 Os05g0147800 OSJNBa0077J22.14 OSNPB_050147800,Os05g0147700 OSNPB_050147700,Os02g0542901 OSNPB_020542901 ENOG411DZTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0595800 protein A0A0P0WR41 A0A0P0WR41_ORYSJ Os05g0595800 OSNPB_050595800 ENOG411DZTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0597800 protein (cDNA clone:J023140E08, full insert sequence),OSJNBa0081L15.3 protein (Os04g0483200 protein) (cDNA clone:J023014J04, full insert sequence) Q6K5K7,Q7FAW5 Q6K5K7_ORYSJ,Q7FAW5_ORYSJ Os02g0597800 OJ1212_D02.6 OSNPB_020597800,Os04g0483200 OsJ_15229 OSJNBa0081L15.3 OSNPB_040483200 ENOG411DZTI ROS3 Q9FGT1 Q9FGT1_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At5g58130) 81080 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At5g58130) nucleus [GO:0005634]; RNA binding [GO:0003723]; DNA demethylation [GO:0080111]; gene silencing [GO:0016458] locus:2155811; AT5G58130 RRM Os02g0138700 protein,Os02g0138200 protein (RNA recognition motif (RRM)-containing protein-like) (cDNA clone:J013000D21, full insert sequence),Os02g0138200 protein,Os02g0138200 protein (Fragment) Q6YXY9,Q6YXX3,A0A0P0VEI1,A0A0P0VEN9 Q6YXY9_ORYSJ,Q6YXX3_ORYSJ,A0A0P0VEI1_ORYSJ,A0A0P0VEN9_ORYSJ Os02g0138700 OsJ_05312 OSJNBa0026E05.28 OSNPB_020138700,Os02g0138200 Os02g0138200 OsJ_05309 OSJNBa0026E05.19-1 OSNPB_020138200,Os02g0138200 OSNPB_020138200 ENOG411DZTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Phospholipase A1 EG1, chloroplastic/mitochondrial (EC 3.1.1.32) (Protein EXTRA GLUME 1),Os02g0633000 protein,Os11g0468300 protein,Os01g0900700 protein Q8S1D9,A0A0P0VM05,A0A0P0Y2C1,A0A0P0VBR4 EG1_ORYSJ,A0A0P0VM05_ORYSJ,A0A0P0Y2C1_ORYSJ,A0A0P0VBR4_ORYSJ EG1 Os01g0900400 LOC_Os01g67430 P0035F12.8,Os02g0633000 OSNPB_020633000,Os11g0468300 OSNPB_110468300,Os01g0900700 OSNPB_010900700 FUNCTION: Phospholipase that releases free fatty acids from phospholipids. Catalyzes the initial step of jasmonate (JA) biosynthesis. Required for the biosynthesis of endogenous JA in seedling, inflorescence and spikelets. Not essential for JA biosynthesis after wounding (PubMed:24647160). Mediates spikelet development and specification of empty-glume identity (PubMed:18980657, PubMed:24647160). Functions in a high temperature-dependent manner to maintain floral developmental robustness under heat stress conditions. Functions by safeguarding the expression of several floral identity genes, such as MADS1, MADS6 and G1 (PubMed:27367609). {ECO:0000269|PubMed:18980657, ECO:0000269|PubMed:24647160, ECO:0000269|PubMed:27367609}. ENOG411DZTD F4J2X9,A8MR60 F4J2X9_ARATH,A8MR60_ARATH tRNA dimethylallyltransferase 25300,25158 tRNA dimethylallyltransferase transferase activity [GO:0016740] locus:4010713769; AT3G23255 NA Os10g0466100 protein A0A0P0XV57 A0A0P0XV57_ORYSJ Os10g0466100 OSNPB_100466100 ENOG411DZTB Q9C9S1 Q9C9S1_ARATH At1g78110 (Nucleolar GTP-binding protein) (Uncharacterized protein At1g78110) (Uncharacterized protein T11I11.5) 38996 At1g78110 (Nucleolar GTP-binding protein) (Uncharacterized protein At1g78110) (Uncharacterized protein T11I11.5) plasma membrane [GO:0005886] locus:2194729; AT1G78110 NA Os09g0370000 protein Q6H4G5 Q6H4G5_ORYSJ Os09g0370000 B1168F12.4 OJ1759_F09.41 OsJ_29114 OSNPB_090370000 ENOG411DZTC Q6GKW8 Q6GKW8_ARATH At1g02290 (Uncharacterized protein At1g02290) 50459 At1g02290 (Uncharacterized protein At1g02290) Ino80 complex [GO:0031011] locus:2204868; AT1G02290 NA DNA-binding protein-like (Os08g0500500 protein) Q6ZK15 Q6ZK15_ORYSJ Os08g0500500 OJ1118_A06.18 OJ1345_D02.2 OSNPB_080500500 ENOG411DZT8 F4IJK5 F4IJK5_ARATH RNA-binding KH domain-containing protein 67755 RNA-binding KH domain-containing protein RNA binding [GO:0003723] locus:2066020; AT2G22600 KH domain-containing protein NA NA NA NA NA NA NA ENOG411DZT4 Q0WQ88,A0A1P8B7A0,A0A1P8B7B9,A0A1P8B797,A0A1P8B7A1,F4JI50 Q0WQ88_ARATH,A0A1P8B7A0_ARATH,A0A1P8B7B9_ARATH,A0A1P8B797_ARATH,A0A1P8B7A1_ARATH,F4JI50_ARATH Mitochondrial substrate carrier family protein (Uncharacterized protein At4g03115),Mitochondrial substrate carrier family protein 26371,37513,27230,24347,24365,33898 Mitochondrial substrate carrier family protein (Uncharacterized protein At4g03115),Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; transport [GO:0006810],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; oxidative phosphorylation uncoupler activity [GO:0017077]; mitochondrial transmembrane transport [GO:1990542]; mitochondrial transport [GO:0006839] locus:504955482; AT4G03115 mitochondrial substrate carrier family protein Os12g0533800 protein (Fragment) A0A0P0YBJ7 A0A0P0YBJ7_ORYSJ Os12g0533800 OSNPB_120533800 ENOG411DZT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0698100 protein (cDNA clone:001-025-G09, full insert sequence) Q6Z8F3 Q6Z8F3_ORYSJ Os02g0698100 OSNPB_020698100 P0459B01.12 ENOG411DZT3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DZT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os09g0570100 protein (Fragment) A0A0P0XR28,A0A0P0XQM0 A0A0P0XR28_ORYSJ,A0A0P0XQM0_ORYSJ Os09g0570100 OSNPB_090570100 ENOG411DZT1 COI1 O04197 COI1_ARATH Coronatine-insensitive protein 1 (COI-1) (F-box/LRR-repeat protein 2) (AtCOI1) (AtFBL2) DISRUPTION PHENOTYPE: Mutants coi1-1 to coi1-14 are male sterile, insensitive to MeJA and coronatine, and exhibit enhanced resistance to Pseudomonas syringae atropurpurea (coronatine producing strain). Mutant coi1-16 has reduced sensitivity to jasmonate, but is male fertile when grown below 22 degrees Celsius and male sterile otherwise. {ECO:0000269|PubMed:9582125}. Highly susceptible to the oomycete Pythium irregulare.,Insensitive to methyl jasmonate inhibition of growth.,Mutant displays resistance to Pst DC3000 and is insensitive to coronatine and methyl jasmonate.,Seedlings have green leaves and well-developed roots when grown on MS medium [mineral salts and sucrose 3% (w/v) solidified with agar 0.6% (w/v)] supplemented with 50uM methyl jasmonate.,coi1-1 (GL1) single mutant was generated by backcrossing the original coi1-1 to Col-0. coi1-1 single mutant leaves produce fewer trichomes than wild-type (ca. 30% reduction). Morphology and branching number of coi1-1 trichomes are normal. coi1-1 does not increase trichome density in response to wounding or methyl jasmonate treatment.,Erysiphe cichoracearum spores had germinated by day 1 but conidiophores did not develop until 4 days post infection. After 6 dpi many individual colonies had merged; therefore further analysis was unfeasible. The numbers of conidiophores in colonies on coi1-16 plants increased faster than on wild-type plants.,Following Pythium irregulare infection salicylic acid levels increased over wild-type levels.,Following Pythium irregulare infection the increase in JA levels was lower in sid2-1 plants than in wild type.,This mutant has responses to JA similar to coi1-1 except that it displays temperature-sensitive fertility and can be maintained as a pure breeding line.,Coronatine which effectively inhibits ABA-induced stomatal closure cannot prevent it in the mutant nor can it efficiently reopen its stomata. Male sterile; Altered response to wounding; Insensitive to jasmonate-J. Turner-1998 FUNCTION: Required for jasmonate-regulated plant fertility and defense processes, and for coronatine and/or other elicitors perceptions/responses. Seems to not be required for meiosis. Required for the regulation of some genes induced by wounding, but not for all. Component of SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including the ribulose bisphosphate carboxylase small chain 1B RBCS-1B and the histone deacetylase HDA6). These SCF complexes play crucial roles in regulating response to jasmonate, and their interactions with the COP9 signalosome (CSN) appear to be important for their activity. Interacts with TIFY10A and inositol pentakisphosphate to form a high-affinity jasmonates coreceptor. Involved in the regulation of plant gene expression during plant-pathogen interactions with Pseudomonas syringae and Alternaria brassicicola. {ECO:0000269|PubMed:10810145, ECO:0000269|PubMed:12172031, ECO:0000269|PubMed:12172836, ECO:0000269|PubMed:12244256, ECO:0000269|PubMed:12445118, ECO:0000269|PubMed:12724535, ECO:0000269|PubMed:12805591, ECO:0000269|PubMed:14756769, ECO:0000269|PubMed:9582125}. PATHWAY: Protein modification; protein ubiquitination. 67665 Coronatine-insensitive protein 1 (COI-1) (F-box/LRR-repeat protein 2) (AtCOI1) (AtFBL2) anther dehiscence [GO:0009901]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; jasmonic acid mediated signaling pathway [GO:0009867]; negative regulation of defense response [GO:0031348]; protein ubiquitination [GO:0016567]; regulation of flower development [GO:0009909]; response to far red light [GO:0010218]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; root development [GO:0048364]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]; shade avoidance [GO:0009641]; stamen development [GO:0048443]; stomatal movement [GO:0010118] locus:2061136; AT2G39940 Coronatine-insensitive protein Coronatine-insensitive protein homolog 1a (OsCOI1a),Coronatine-insensitive protein homolog 1b (OsCOI1b) (COI1 protein homolog) (OsCOI1H) Q6Y9P5,Q60EH4 COI1A_ORYSJ,COI1B_ORYSJ COI1A COI1 Os01g0853400 LOC_Os01g63420 OsJ_04105 P0529E05.20,COI1B Os05g0449500 B1122D01.5 OsJ_18742 FUNCTION: Involved in jasmonate (JA) signaling. Required for jasmonate signaling in plant defense responses (PubMed:22529386). Can complement Arabidopsis coi1-1 mutant and restore jasmonate signaling (PubMed:23320078). Required for JA-regulated defense responses to infestation by the leaffolder Cnaphalocrocis medinalis (PubMed:22558386, PubMed:24003150). May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex (PubMed:21332845). Component of SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including TIFY/JAZ family (By similarity). {ECO:0000250|UniProtKB:O04197, ECO:0000269|PubMed:21332845, ECO:0000269|PubMed:22529386, ECO:0000269|PubMed:22558386, ECO:0000269|PubMed:23320078, ECO:0000269|PubMed:24003150}.,FUNCTION: Involved in jasmonate (JA) signaling. Required for jasmonate signaling in plant defense responses (PubMed:22529386). Can complement Arabidopsis coi1-1 mutant and restore jasmonate signaling (PubMed:23320078). Component of SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including TIFY/JAZ family (By similarity). {ECO:0000250|UniProtKB:O04197, ECO:0000269|PubMed:22529386, ECO:0000269|PubMed:23320078}. MISCELLANEOUS: Plants silencing COI1A and COI1B show increased plant height and seed length, are hypersensitive to gibberellin, and display reduced sensitivity to inhibition of seedling growth by jasmonate (PubMed:22529386). Plants silencing COI1A show early and reduced tillering with few grain filling, and display increased sensitivity to the chewing insect Cnaphalocrocis medinalis (PubMed:22558386). {ECO:0000269|PubMed:22529386, ECO:0000269|PubMed:22558386}.,MISCELLANEOUS: Plants silencing COI1A and COI1B show increased plant height and seed length, are hypersensitive to gibberellin, and display reduced sensitivity to inhibition of seedling growth by jasmonate. {ECO:0000269|PubMed:22529386}. ENOG411E2HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Disease resistance protein RPM1, putative, expressed (Os10g0132700 protein) (cDNA clone:J023150J06, full insert sequence),Os10g0131000 protein,Os10g0133000 protein Q10A62,A0A0N7KRE1,A0A0P0XRS2 Q10A62_ORYSJ,A0A0N7KRE1_ORYSJ,A0A0P0XRS2_ORYSJ Os10g0132700 LOC_Os10g04342 OSNPB_100132700,Os10g0131000 OSNPB_100131000,Os10g0133000 OSNPB_100133000 ENOG411E2HR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc Probable protein phosphatase 2C 42 (OsPP2C42) (EC 3.1.3.16),Os04g0500900 protein Q7XU84,A0A0P0WC52 P2C42_ORYSJ,A0A0P0WC52_ORYSJ Os04g0500900 LOC_Os04g42260 OSJNBa0029H02.20,Os04g0500900 OSNPB_040500900 ENOG411E2H3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DQ6Z PRP8B,PRP8A Q9T0I6,Q9SSD2 PRP8B_ARATH,PRP8A_ARATH Pre-mRNA-processing-splicing factor 8B (PRP8 homolog B) (AtPRP8B),Pre-mRNA-processing-splicing factor 8A (PRP8 homolog A) (AtPRP8A) (Protein ABNORMAL SUSPENSOR 2) (Protein EMBRYO DEFECTIVE 14) (Protein EMBRYO DEFECTIVE 177) (Protein EMBRYO DEFECTIVE 33) (Protein SUPPRESSOR OF OVEREXPRESSED FCA 81) DISRUPTION PHENOTYPE: Embryonic lethality due to abnormal suspensor development. {ECO:0000269|Ref.3}. Embryo defective; Globular; Abnormal suspensor-D. Meinke-2002 FUNCTION: Functions as a scaffold that mediates the ordered assembly of spliceosomal proteins and snRNAs. Required for the assembly of the U4/U6-U5 tri-snRNP complex. {ECO:0000250|UniProtKB:Q6P2Q9}.,FUNCTION: Functions as a scaffold that mediates the ordered assembly of spliceosomal proteins and snRNAs. Required for the assembly of the U4/U6-U5 tri-snRNP complex (By similarity). Required for embryo development (Ref.3). Required for splicing efficiency of COOLAIR introns and usage of the proximal poly(A) site. COOLAIR is a set of long non-coding antisense transcripts produced at the FLOWERING LOCUS C (FLC). COOLAIR initiates just downstream of the major sense transcript poly(A) site and terminates either early or extends into the FLC promoter region. Splicing of COOLAIR by PRP8A is functionally important for FLC regulation (PubMed:24725596). {ECO:0000250|UniProtKB:Q6P2Q9, ECO:0000269|PubMed:24725596, ECO:0000269|Ref.3}. R-ATH-72163;R-ATH-72165; 274802,275427 Pre-mRNA-processing-splicing factor 8B (PRP8 homolog B) (AtPRP8B),Pre-mRNA-processing-splicing factor 8A (PRP8 homolog A) (AtPRP8A) (Protein ABNORMAL SUSPENSOR 2) (Protein EMBRYO DEFECTIVE 14) (Protein EMBRYO DEFECTIVE 177) (Protein EMBRYO DEFECTIVE 33) (Protein SUPPRESSOR OF OVEREXPRESSED FCA 81) plasmodesma [GO:0009506]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; U5 snRNA binding [GO:0030623]; U6 snRNA binding [GO:0017070]; mRNA splicing, via spliceosome [GO:0000398],catalytic step 2 spliceosome [GO:0071013]; chloroplast [GO:0009507]; membrane [GO:0016020]; U5 snRNP [GO:0005682]; pre-mRNA intronic binding [GO:0097157]; second spliceosomal transesterification activity [GO:0000386]; U1 snRNA binding [GO:0030619]; U2 snRNA binding [GO:0030620]; U5 snRNA binding [GO:0030623]; U6 snRNA binding [GO:0017070]; alternative mRNA splicing, via spliceosome [GO:0000380]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal tri-snRNP complex assembly [GO:0000244] locus:2141791;,locus:2016289; AT4G38780,AT1G80070 pre-mRNA-processing-splicing factor Os06g0167000 protein (Fragment),Os05g0163250 protein (Fragment) A0A0P0WTI1,A0A0P0WTF4,A0A0P0WSW9,A0A0P0WT59,A0A0P0WIH1 A0A0P0WTI1_ORYSJ,A0A0P0WTF4_ORYSJ,A0A0P0WSW9_ORYSJ,A0A0P0WT59_ORYSJ,A0A0P0WIH1_ORYSJ Os06g0167000 OSNPB_060167000,Os05g0163250 OSNPB_050163250 ENOG411DQ6Y SWI2 F4I2H2 CHR9_ARATH Switch 2 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 9) (AtCHR9) FUNCTION: May be involved in early DNA damage response (By similarity). Probable chromatin remodeling factor. {ECO:0000250|UniProtKB:Q5T890, ECO:0000303|PubMed:16547115}. 3.6.4.- 98486 Switch 2 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 9) (AtCHR9) membrane [GO:0016020]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; DNA repair [GO:0006281] locus:2024198; AT1G03750 DNA repair and recombination protein RAD26-like Os05g0247900 protein (Uknown protein) (cDNA clone:J023109O07, full insert sequence) Q5WMW4 Q5WMW4_ORYSJ Os05g0247900 OJ1037_G10.9 OSNPB_050247900 ENOG411DQ6X Q9ZVP0 Q9ZVP0_ARATH At1g05060 (Coiled-coil protein) (T7A14.7 protein) (Uncharacterized protein At1g05060) 27838 At1g05060 (Coiled-coil protein) (T7A14.7 protein) (Uncharacterized protein At1g05060) locus:2205553; AT1G05060 NA Os06g0239700 protein (Fragment) A0A0P0WV43 A0A0P0WV43_ORYSJ Os06g0239700 OSNPB_060239700 ENOG411DQ6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme 10A19I.5 (Os05g0579200 protein) (cDNA clone:002-103-D02, full insert sequence),Acyl-CoA ligase-like (Os01g0636300 protein) Q688U4,Q5VNP6 Q688U4_ORYSJ,Q5VNP6_ORYSJ 10A19I.5 Os05g0579200 OsJ_19666 OSJNBa0017N18.7 OSNPB_050579200,P0696E01.6 Os01g0636300 OSNPB_010636300 ENOG411DQ6R F6H11.40 O49532,Q2V2U9 O49532_ARATH,Q2V2U9_ARATH Ankyrin repeat family protein (At5g65860) (Predicted protein) (Similarity to protein arginine methyltransferase) (Uncharacterized protein At5g65860),Ankyrin repeat family protein R-ATH-71288; 36750,39070 Ankyrin repeat family protein (At5g65860) (Predicted protein) (Similarity to protein arginine methyltransferase) (Uncharacterized protein At5g65860),Ankyrin repeat family protein protein-arginine N-methyltransferase activity [GO:0016274],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein-arginine N-methyltransferase activity [GO:0016274]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; S-adenosylhomocysteine metabolic process [GO:0046498]; S-adenosylmethionine metabolic process [GO:0046500] locus:2152074; AT5G65860 arginine N-methyltransferase Ankyrin repeat family protein, putative, expressed (Os03g0761200 protein) (Putative methyltransferase) (cDNA clone:J033048C14, full insert sequence) Q94H97 Q94H97_ORYSJ LOC_Os03g55330 Os03g0761200 OsJ_12677 OSJNBb0048A17.9 OSNPB_030761200 ENOG411DQ6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytokinin-O-glucosyltransferase 3 Glycosyltransferase (EC 2.4.1.-),Os04g0194400 protein (Fragment),Os01g0175850 protein (Fragment) Q8LNA9,A0A0P0W793,A0A0P0UZ13 Q8LNA9_ORYSJ,A0A0P0W793_ORYSJ,A0A0P0UZ13_ORYSJ LOC_Os10g09990 Os10g0178500 OSJNBa0047G15.18 OSNPB_100178500,Os04g0194400 OSNPB_040194400,Os01g0175850 OSNPB_010175850 ENOG411DQ6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mitochondrial transcription termination factor-like Mitochondrial transcription termination factor-like (Os06g0224500 protein) (Os06g0224600 protein),Mitochondrial transcription termination factor-like (Os06g0224900 protein) (cDNA clone:001-202-H05, full insert sequence) (cDNA clone:J013037F24, full insert sequence),Mitochondrial transcription termination factor-like (Os06g0224400 protein) (cDNA clone:J033148L16, full insert sequence),Os06g0224650 protein Q67UH7,Q67UH3,Q67UI0,A3B9U0 Q67UH7_ORYSJ,Q67UH3_ORYSJ,Q67UI0_ORYSJ,A3B9U0_ORYSJ Os06g0224500 Os06g0224600 OSNPB_060224500 P0638H11.34,Os06g0224900 OsJ_20655 OSNPB_060224900 P0638H11.39,Os06g0224400 Os06g0224400 OsJ_20651 OSNPB_060224400 P0638H11.30,Os06g0224650 OsJ_20653 OSNPB_060224650 ENOG411DQ6T EXPA11 Q9LNU3,A0A1P8APG3 EXP11_ARATH,A0A1P8APG3_ARATH Expansin-A11 (AtEXPA11) (Alpha-expansin-11) (At-EXP11) (AtEx11) (Ath-ExpAlpha-1.14),Expansin 11 FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 26761,21011 Expansin-A11 (AtEXPA11) (Alpha-expansin-11) (At-EXP11) (AtEx11) (Ath-ExpAlpha-1.14),Expansin 11 cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] TISSUE SPECIFICITY: Expressed in the leaf, but not in the epidermis or in the vascular bundles. {ECO:0000269|Ref.4}. locus:2198576; AT1G20190 plant-type cell wall organization Expansin-A1 (Alpha-expansin-1) (OsEXP1) (OsEXPA1) (OsaEXPa1.16) (RiExA) Q7XWU8 EXPA1_ORYSJ EXPA1 EXP1 Os04g0228400 LOC_Os04g15840 OsJ_13482 OSJNBa0065B15.2 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DQ6J Q84WW1,C0Z295 FB140_ARATH,C0Z295_ARATH F-box protein At3g12350,AT3G12350 protein (F-box family protein) 47756,33199 F-box protein At3g12350,AT3G12350 protein (F-box family protein) locus:2092487; AT3G12350 F-Box protein F-box domain containing protein, expressed (Os12g0511000 protein) (cDNA, clone: J065191E23, full insert sequence) Q2QQ09 Q2QQ09_ORYSJ Os12g0511000 LOC_Os12g32630 OSNPB_120511000 ENOG411DQ6C UBC34,UBC33 Q9SHI7,Q9FK29,A0A1P8ARH3 UBC34_ARATH,UBC33_ARATH,A0A1P8ARH3_ARATH Ubiquitin-conjugating enzyme E2 34 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 34) (Ubiquitin carrier protein 34),Probable ubiquitin-conjugating enzyme E2 33 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 33) (Ubiquitin carrier protein 33),Ubiquitin-conjugating enzyme 34 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806}.,FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 26614,27357,27279 Ubiquitin-conjugating enzyme E2 34 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 34) (Ubiquitin carrier protein 34),Probable ubiquitin-conjugating enzyme E2 33 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 33) (Ubiquitin carrier protein 33),Ubiquitin-conjugating enzyme 34 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent ERAD pathway [GO:0030433]; ubiquitin-dependent protein catabolic process [GO:0006511],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent ERAD pathway [GO:0030433],integral component of membrane [GO:0016021] locus:2020392;,locus:2177502; AT1G17280,AT5G50430 ubiquitin-conjugating enzyme Os06g0193000 protein (Putative ubiquitin conjugating enzyme) (cDNA clone:J013001L17, full insert sequence),Os06g0193000 protein (Fragment) Q69Y56,A0A0N7KLP5 Q69Y56_ORYSJ,A0A0N7KLP5_ORYSJ Os06g0193000 OsJ_20427 OSNPB_060193000 P0698A06.21,Os06g0193000 OSNPB_060193000 ENOG411DQ6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 10 (OsC3H10),Zinc finger CCCH domain-containing protein 37 (OsC3H37) Q94JI5,Q65X92 C3H10_ORYSJ,C3H37_ORYSJ Os01g0738400 LOC_Os01g53650 OSJNBb0021A09.32 P0638D12.6,Os05g0525900 LOC_Os05g45020 OJ1593_C11.10 ENOG411DQ6A IP5P15,IP5P12,FRA3,5PTase12 Q84W55,O80560,A0A1P8AR99,A0A1P8AX44 IP5PF_ARATH,IP5PC_ARATH,A0A1P8AR99_ARATH,A0A1P8AX44_ARATH Type II inositol polyphosphate 5-phosphatase 15 (At5PTase15) (EC 3.1.3.36) (EC 3.1.3.86) (Protein FRAGILE FIBER 3),Type I inositol polyphosphate 5-phosphatase 12 (At5PTase12) (EC 3.1.3.56),Endonuclease/exonuclease/phosphatase family protein DISRUPTION PHENOTYPE: Precocious pollen germination within anthers. Hypersensitivity to abscisic acid (ABA) during seed germination. Elevated levels of Ins(1,4,5)P3 and cytosolic Ca(2+). {ECO:0000269|PubMed:22573619}. FUNCTION: Has phosphatase activity toward PtdIns(4,5)P2, PtdIns(3,4,5)P3 and Ins(1,4,5)P3. Has a higher substrate affinity toward PtdIns(4,5)P2. Required for secondary wall synthesis and actin organization in fiber cells. {ECO:0000269|PubMed:15539468}.,FUNCTION: Has phosphatase activity toward Ins(1,4,5)P3 (PubMed:15574849). Controls Ins(1,4,5)P3/Ca(2+) levels that is crucial for maintaining pollen dormancy and regulating early germination of pollen (PubMed:22573619). {ECO:0000269|PubMed:15574849, ECO:0000269|PubMed:22573619}. ARA:AT1G65580-MONOMER;,ARA:AT2G43900-MONOMER;MetaCyc:AT2G43900-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.36;,3.1.3.56; 3.1.3.36; 3.1.3.86,3.1.3.56 121711,144731,92508,148503 Type II inositol polyphosphate 5-phosphatase 15 (At5PTase15) (EC 3.1.3.36) (EC 3.1.3.86) (Protein FRAGILE FIBER 3),Type I inositol polyphosphate 5-phosphatase 12 (At5PTase12) (EC 3.1.3.56),Endonuclease/exonuclease/phosphatase family protein metal ion binding [GO:0046872]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; phosphatidylinositol dephosphorylation [GO:0046856],inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity [GO:0052659]; inositol-1,4,5-trisphosphate 5-phosphatase activity [GO:0052658]; inositol-polyphosphate 5-phosphatase activity [GO:0004445]; metal ion binding [GO:0046872]; phosphatidylinositol dephosphorylation [GO:0046856]; pollen germination [GO:0009846],endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; phosphatidylinositol dephosphorylation [GO:0046856] TISSUE SPECIFICITY: Predominantly expressed in interfascicular fibers and vascular bundles. Expressed in seedlings, stems, roots and flowers. Expressed at lower level in mature leaves. {ECO:0000269|PubMed:15539468}.,TISSUE SPECIFICITY: Mostly expressed in leaves and flowers and only weakly expressed in roots, stem and young seedlings. More precisely detected in cotyledon tips, hydathodes of leaves and mature pollen grains. {ECO:0000269|PubMed:22573619}. locus:2034141; AT1G65580,AT2G43900 type I inositol-145-trisphosphate 5-phosphatase Os09g0500300 protein (Fragment),Os08g0524100 protein (Putative inositol 1,4,5-trisphosphate 5-phosphatase) Q0J0S7,Q6ZK18 Q0J0S7_ORYSJ,Q6ZK18_ORYSJ Os09g0500300 OSNPB_090500300,Os08g0524100 Os08g0524100 OJ1186_G01.37 OSNPB_080524100 ENOG411DQ6G Q9LU07,A0A1P8BBJ9,F4KAB4 Q9LU07_ARATH,A0A1P8BBJ9_ARATH,F4KAB4_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 38908,36739,37202 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2152135;,locus:2152140; AT5G44590,AT5G44600 NA Expressed protein (Os03g0126300 protein) (cDNA clone:001-042-G03, full insert sequence),Os03g0126300 protein,Os03g0126300 protein (Fragment) Q10SD2,A0A0P0VSL8,A0A0P0VSK2,A0A0N7KGI1 Q10SD2_ORYSJ,A0A0P0VSL8_ORYSJ,A0A0P0VSK2_ORYSJ,A0A0N7KGI1_ORYSJ Os03g0126300 LOC_Os03g03470 OSNPB_030126300,Os03g0126300 OSNPB_030126300 ENOG411DQ6F ABC1K1,ACDO1 Q8RWG1,A0A1P8B7P6 AB1K1_ARATH,A0A1P8B7P6_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic (ABC1-LIKE KINASE 1) (EC 2.7.-.-) (EC 2.7.11.1) (Protein ABC1-LIKE KINASE RELATED TO CHLOROPHYLL DEGRADATION AND OXIDATIVE STRESS 1) (AtACDO1) (Protein BLEACHING AND DWARF IN RED LIGHT 1) (Protein PROTON GRADIENT REGULATION 6),Protein kinase superfamily protein DISRUPTION PHENOTYPE: High chlorophyll fluorescence and reduced non-photochemical quenching (NPQ) caused by defects in photosynthetic electron transport. Specifically deficient in the electron carrier plastoquinone, as well as in beta-carotene and the xanthophyll lutein, and defective in membrane antioxidant tocopherol metabolism. Altered plastoglobule protein composition (PubMed:24267661). Abnormal development with albino cotyledons and paler mesophyll cells leading to yellow-green leaves due to reduced contents of carotenoids and chlorophyll, as well as changes in the numbers of chlorophyll-binding proteins of the photosynthetic complexes (PubMed:22447966, PubMed:24267661, PubMed:25882344). In bdr1-1 and bdr1-2, increased accumulation of anthocyanin under red and blue light conditions. Exposure to red light for 5 days leads to dwarf plants with pale green rosette leaves. Reduced level of D1 protein, product of psbA, one of the four core subunits of the photosystem II (PSII) (PubMed:25882344). Increased levels of chlorophyll degradation products such as chlorophyllide (Chlide) a and pheophorbide a. Stronger photosynthetic and metabolic perturbations in response to high light stress and methyl viologen (paraquat, MV), an herbicide triggering photooxidative stress, strongly affecting carbohydrate metabolism (PubMed:22447966, PubMed:24267661). However, the mutant acclimates to high light after 7 days together with a recovery of carotenoid levels and a drastic alteration in the starch-to-sucrose ratio (PubMed:24267661). Lower transcript levels of the oxidative stress response genes FSD1, CSD1, CAT1, and UTG71C1 after MV treatment (PubMed:22447966). Conditional light stress phenotype in the double mutant abc1k1 abc1k3 that displays rapid chlorosis upon high light stress and slower, but irreversible, senescence-like phenotype during moderate light stress, drought or nitrogen limitation, but not cold stress. This senescence-like phenotype is associated with the degradation of the photosystem II core and up-regulation of chlorophyll degradation. Modified prenyl-lipid composition in plastoglobules (PG) probably due to reduced VTE1 activity and loss of CCD4. Abnormal recruitement of plastid jasmonate biosynthesis enzymes in PG (PubMed:23673981). {ECO:0000269|PubMed:22447966, ECO:0000269|PubMed:23673981, ECO:0000269|PubMed:24267661, ECO:0000269|PubMed:25882344}. FUNCTION: Kinase that can phosphorylates the tocopherol cyclase VTE1, a key enzyme of tocopherol (vitamin E) metabolism and involved in the recycling of oxidated alpha-tocopherol quinone, possibly stabilizing it at plastoglobules. Regulates also plastoglobule protein composition (PubMed:24267661). Prevents photodamage of chloroplasts under continuous red light, thus working in opposition to ABC1K3 (PubMed:25882344). Together with ABC1K1, contributes to plastoglobule (PG) function in prenyl-lipid metabolism, stress response, and thylakoid remodeling (PubMed:23673981, PubMed:24267661). Involved in chlorophyll degradation and in the maintenance of the number of chlorophyll-binding photosynthetic thylakoid membranes (PubMed:22447966). Ensures photosynthetic electron transport by regulating the homeostasis of plastoquinone, beta-carotene and xanthophyll lutein, as well as membrane antioxidant tocopherol metabolism (PubMed:24267661). Seems to affect specifically stability or turnover of D1 protein, product of psbA, one of the four core subunits of the photosystem II (PSII) (PubMed:25882344). Required for photooxidative stress responses, including the induction of oxidative stress response genes (e.g. FSD1, CSD1, CAT1, and UTG71C1), to prevent photosystem II core and chlorophyll degradations (PubMed:22447966, PubMed:23673981, PubMed:24267661). {ECO:0000269|PubMed:22447966, ECO:0000269|PubMed:23673981, ECO:0000269|PubMed:24267661, ECO:0000269|PubMed:25882344}. ARA:GQT-2246-MONOMER; 2.7.-.-; 2.7.11.1 76757,54532 Protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic (ABC1-LIKE KINASE 1) (EC 2.7.-.-) (EC 2.7.11.1) (Protein ABC1-LIKE KINASE RELATED TO CHLOROPHYLL DEGRADATION AND OXIDATIVE STRESS 1) (AtACDO1) (Protein BLEACHING AND DWARF IN RED LIGHT 1) (Protein PROTON GRADIENT REGULATION 6),Protein kinase superfamily protein chloroplast [GO:0009507]; plastoglobule [GO:0010287]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; cellular response to nitrogen starvation [GO:0006995]; chlorophyll catabolic process [GO:0015996]; photosynthetic electron transport chain [GO:0009767]; plastoglobule organization [GO:0080177]; positive regulation of carotenoid biosynthetic process [GO:1904143]; positive regulation of chlorophyll biosynthetic process [GO:1902326]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of photosynthesis [GO:0010109]; regulation of tocopherol cyclase activity [GO:1902171]; response to blue light [GO:0009637]; response to paraquat [GO:1901562]; response to photooxidative stress [GO:0080183]; response to red light [GO:0010114]; response to water deprivation [GO:0009414]; thylakoid membrane organization [GO:0010027],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in all tissues (e.g. especially in leaves) at all developmental stages from seed germination to flowering, except in the root tips. {ECO:0000269|PubMed:22447966}. locus:2128116; AT4G31390 ABC1 family Os11g0216300 protein (Fragment) Q0ITU3,A0A0P0Y126 Q0ITU3_ORYSJ,A0A0P0Y126_ORYSJ Os11g0216300 OSNPB_110216300 ENOG411DQ6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DQ6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transmembrane transport Probable metal-nicotianamine transporter YSL3 (Protein YELLOW STRIPE LIKE 3) (OsYSL3),Probable metal-nicotianamine transporter YSL4 (Protein YELLOW STRIPE LIKE 4) (OsYSL4) Q6AVD0,Q688S6 YSL3_ORYSJ,YSL4_ORYSJ YSL3 Os05g0251900 LOC_Os05g16280 OJ1171_H02.13,YSL4 Os05g0252000 LOC_Os05g16290 OsJ_17816 OSJNBa0009N21.1 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DQ63 A0A1P8B6M0,A0A1P8B6L8,F4JP32,A0A1P8B6M6 A0A1P8B6M0_ARATH,A0A1P8B6L8_ARATH,F4JP32_ARATH,A0A1P8B6M6_ARATH DNA topoisomerase 4 subunit B (DUF810) 132321,133801,127964,128615 DNA topoisomerase 4 subunit B (DUF810) isomerase activity [GO:0016853] locus:2139707; AT4G11670 Protein of unknown function (DUF810) Os04g0568850 protein (Fragment),Os04g0568800 protein (Fragment) A0A0N7KJJ0,A0A0P0WDQ1 A0A0N7KJJ0_ORYSJ,A0A0P0WDQ1_ORYSJ Os04g0568850 OSNPB_040568850,Os04g0568800 OSNPB_040568800 ENOG411DQ62 Q9FLG8,F4IKF6,Q6NMN6,A0A1P8B102,A0A1P8B0X9,A0A1P8B0X5,A0A1P8B0Y7,A0A1P8B0W8 SPNS2_ARATH,SPNS3_ARATH,SPNS1_ARATH,A0A1P8B102_ARATH,A0A1P8B0X9_ARATH,A0A1P8B0X5_ARATH,A0A1P8B0Y7_ARATH,A0A1P8B0W8_ARATH Probable sphingolipid transporter spinster homolog 2,Probable sphingolipid transporter spinster homolog 3,Probable sphingolipid transporter spinster homolog 1,Major facilitator superfamily protein FUNCTION: Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. {ECO:0000250}.,FUNCTION: Probable sphingolipid transporter. {ECO:0000250}. 52155,55667,53509,42035,58465,58135,57070,46539 Probable sphingolipid transporter spinster homolog 2,Probable sphingolipid transporter spinster homolog 3,Probable sphingolipid transporter spinster homolog 1,Major facilitator superfamily protein integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; lipid transport [GO:0006869]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; lipid transport [GO:0006869]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; plasma membrane [GO:0005886]; lipid transport [GO:0006869]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2179401;,locus:2066045;,locus:504954889; AT5G64500,AT2G22730,AT5G65687 protein spinster homolog 1-like OSJNBa0038O10.10 protein (Os04g0525900 protein) Q7XKJ7 Q7XKJ7_ORYSJ Os04g0525900 OSJNBa0038O10.10 OSNPB_040525900 ENOG411DQ66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA Os06g0571800 protein (Zinc finger protein-like),Os06g0571800 protein Q5Z624,Q5Z623 Q5Z624_ORYSJ,Q5Z623_ORYSJ P0610D01.14-1 Os06g0571800 OSJNBa0006A22.6-1 OSNPB_060571800,P0610D01.14-2 Os06g0571800 OSJNBa0006A22.6-2 OSNPB_060571800 ENOG411DQ65 DAPB1,DAPB2 O80574,Q8LB01 DAPB1_ARATH,DAPB2_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic (HTPA reductase 1) (EC 1.17.1.8),4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (HTPA reductase 2) (EC 1.17.1.8) FUNCTION: Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. {ECO:0000305|PubMed:15652176}. PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 4/4. ARA:AT2G44040-MONOMER;,ARA:AT3G59890-MONOMER; 1.17.1.8 37550,37870 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic (HTPA reductase 1) (EC 1.17.1.8),4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (HTPA reductase 2) (EC 1.17.1.8) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 4-hydroxy-tetrahydrodipicolinate reductase [GO:0008839]; NADPH binding [GO:0070402]; diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089],chloroplast stroma [GO:0009570]; 4-hydroxy-tetrahydrodipicolinate reductase [GO:0008839]; NADPH binding [GO:0070402]; diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089] locus:2051854;,locus:2080482; AT2G44040,AT3G59890 dihydrodipicolinate reductase Probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic (HTPA reductase 1) (EC 1.17.1.8),Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (HTPA reductase 2) (EC 1.17.1.8),Os03g0245100 protein (Fragment) Q67W29,Q10P67,A0A0P0VVD4 DAPB1_ORYSJ,DAPB2_ORYSJ,A0A0P0VVD4_ORYSJ DAPB1 Os02g0436400 LOC_Os02g24020 OJ1126_B05.33 OsJ_006340 OsJ_06538,DAPB2 Os03g0245100 LOC_Os03g14120 OsJ_009732 OsJ_10116,Os03g0245100 OSNPB_030245100 FUNCTION: Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. {ECO:0000250}. ENOG411EFGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFGF Q9SJJ0 Q9SJJ0_ARATH At2g45350/F14N22.7 (F14N22.7/F14N22.7) (Homeodomain-like superfamily protein) (Uncharacterized protein At2g42660) 28914 At2g45350/F14N22.7 (F14N22.7/F14N22.7) (Homeodomain-like superfamily protein) (Uncharacterized protein At2g42660) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2041539; AT2G42660 MYB family transcription factor NA NA NA NA NA NA NA ENOG411EFGC Q6NKZ1,F4J108,A0A1I9LTE7,A0A1I9LTE9 Q6NKZ1_ARATH,F4J108_ARATH,A0A1I9LTE7_ARATH,A0A1I9LTE9_ARATH At3g63450 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 45675,45995,33479,43625 At3g63450 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2087428; AT3G63450 RRM Os11g0125700 protein,Os12g0123300 protein A0A0P0XY83,A0A0P0Y6Z3 A0A0P0XY83_ORYSJ,A0A0P0Y6Z3_ORYSJ Os11g0125700 OSNPB_110125700,Os12g0123300 OSNPB_120123300 ENOG411EFGI O80782 O80782_ARATH At2g34330 (LOW protein: protein BOBBER-like protein) (Uncharacterized protein At2g34330) 16362 At2g34330 (LOW protein: protein BOBBER-like protein) (Uncharacterized protein At2g34330) locus:2040919; AT2G34330 NA NA NA NA NA NA NA NA ENOG411EFGV FHL A8MR65 FHL_ARATH Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE DISRUPTION PHENOTYPE: Partially blind to far-red (FR). Impaired inhibition of hypocotyl elongation and cotyledons expansion under continuous FR light conditions (PubMed:19482971, PubMed:16045472). In plants lacking FHY1 and FHL, altered phototropism (e.g. phototropic bending) associated with abnormal consitutive cytosolic localization of PHYA (PubMed:22374392, PubMed:17566111). In the double mutant fhl fhy1 several PHYA-dependent phototropic responses are altered (e.g. hypocotyl elongation and cotyledon opening under high-irradiance conditions and seed germination under very-low-fluence conditions), but not for some PHYA-dependent responses such as the abrogation of negative gravitropism in blue light and red-enhanced phototropism (PubMed:17566111). Hyposensitivity to blue light (B) (PubMed:16045472). {ECO:0000269|PubMed:16045472, ECO:0000269|PubMed:17566111, ECO:0000269|PubMed:19482971, ECO:0000269|PubMed:22374392}. Exhibits an insensitivity toward FR abrogation of gravitropism showing a phenotype intermediate between phyA and phyB.,Mutants possessed slightly but significantly longer hypocotyls than WT and phyB mutants. Significantly reduced inhibition of hypocotyl elongation was also evident at 1.4 and 3.4 μmol m-2 sec-1. Unlike fhy1 null mutants fhl-1 nulls do not display significantly decreased sensitivity to the phyA-dependent block of greening in white light after de-etiolation in high intensity FR.,Short hypocotyl and open cotyledons undergoing a partial deetiolation.,The mutant showed only a slight reduction of germination compared with the WT in each treatment.,In FR fhl/fhy1 fails to inhibit hypocotyl elongation and exhibits a hypocotyl as long as phyA with closed cotyledons.,Mutant is resistant to FR-induced block of greening.,The double mutant exhibited almost no promotion of germination. Long hypocotyl; Open cotyledons-N. Chua-2005 FUNCTION: Can activate transcription (By similarity). Essential for light-regulated PHYA nuclear accumulation and subsequent PHYA phototropic signaling processes (PubMed:21969386, PubMed:22374392, PubMed:17566111). PHYA-specific signal transducer in response to continuous FR lights. Mediates the association of PHYA with HFR1 and LAF1 in the nucleus in response to FR conditions (PubMed:19482971, PubMed:16045472). Contributes to inhibition of hypocotyl elongation in continuous blue light (B) (PubMed:16045472). {ECO:0000250|UniProtKB:Q8S4Q6, ECO:0000269|PubMed:16045472, ECO:0000269|PubMed:17566111, ECO:0000269|PubMed:19482971, ECO:0000269|PubMed:21969386, ECO:0000269|PubMed:22374392}. 22376 Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE cytoplasm [GO:0005737]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; chromatin silencing by small RNA [GO:0031048]; maintenance of protein location in nucleus [GO:0051457]; positive regulation of transcription, DNA-templated [GO:0045893]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; transcription, DNA-templated [GO:0006351] locus:2185188; AT5G02200 NA NA NA NA NA NA NA NA ENOG411EFGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os09g0411900 protein Q0J1U7 Q0J1U7_ORYSJ Os09g0411900 Os09g0411900 OSNPB_090411900 ENOG411E6CZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0838200 protein Q943M6 Q943M6_ORYSJ Os01g0838200 Os01g0838200 OsJ_04011 OSNPB_010838200 P0031D11.11 ENOG411EK96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CG-1 domain NA NA NA NA NA NA NA ENOG411DUU8 SLP2 Q944L7 SLP2_ARATH Shewanella-like protein phosphatase 2 (AtSLP2) (EC 3.1.-.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21976480}. FUNCTION: Shows phosphatase activity, hydrolyzing the artificial substrate para-nitrophenylphosphate (pNPP) in vitro. {ECO:0000269|PubMed:21976480}. 3.1.-.- 43282 Shewanella-like protein phosphatase 2 (AtSLP2) (EC 3.1.-.-) cytosol [GO:0005829]; manganese ion binding [GO:0030145]; phosphatase activity [GO:0016791]; phosphoprotein phosphatase activity [GO:0004721] TISSUE SPECIFICITY: Expressed in roots and siliques (at protein level). {ECO:0000269|PubMed:21976480}. locus:2014079; AT1G18480 Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411DUU9 CLV1 Q9SYQ8 CLV1_ARATH Receptor protein kinase CLAVATA1 (EC 2.7.11.1) Triple mutant enhances the floral meristem defects of clv1-11 single mutant. Novel phenotypes include the existence of an enlarged indeterminate meristem in the center of each flower. Leaves are smaller and number of rosette leaves is increased. Fasciated stems and inflorescences; Abnormal leaf phyllotaxy; Slightly rounded leaves; Incomplete penetrance of double leaf formation and increased floral organ number-E. Meyerowitz-1997 FUNCTION: Involved in the detection of CLV3 and CLV3-like (CLE) peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3p as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation. {ECO:0000269|PubMed:19933383}. 2.7.10.2; 2.7.11.1 107598 Receptor protein kinase CLAVATA1 (EC 2.7.11.1) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein self-association [GO:0043621]; receptor serine/threonine kinase binding [GO:0033612]; signal transducer, downstream of receptor, with serine/threonine kinase activity [GO:0004702]; cell differentiation [GO:0030154]; regulation of floral meristem growth [GO:0010080]; regulation of meristem structural organization [GO:0009934]; specification of floral organ number [GO:0048833] TISSUE SPECIFICITY: In a central region of the shoot and in early flower meristems. locus:2204350; AT1G75820 Receptor protein kinase Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 (OsFON1) (EC 2.7.11.1) (CLV1-like LRR receptor kinase) Q5Z9N5 FON1_ORYSJ FON1 Os06g0717200 LOC_Os06g50340 OJ1540_H01.10 OsJ_22674 P0481E08.42 P0541C02.9 DISRUPTION PHENOTYPE: Semi-dwarf with altered numbers of floral organs and rachis branches. Reduced number of tillers. {ECO:0000269|PubMed:16511358}. FUNCTION: Receptor-like kinase protein that regulates the size of the floral meristem. {ECO:0000269|PubMed:15509765}. ENOG411DUU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cbl-interacting protein kinase CBL-interacting protein kinase 25 (EC 2.7.11.1) (OsCIPK25),Os01g0326280 protein,Os04g0183200 protein Q5Z6X0,B9EW50,A0A0P0W736 CIPKP_ORYSJ,B9EW50_ORYSJ,A0A0P0W736_ORYSJ CIPK25 Os06g0543400 LOC_Os06g35160 B1068H08.30 P0007G12.2,Os01g0326280 OsJ_01546 OSNPB_010326280,Os04g0183200 OSNPB_040183200 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DUU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os03g0831800 protein (Putative coat protein complex II (COPII) component) (SEC13-related protein, putative, expressed) (cDNA clone:J033132M13, full insert sequence) Q851A2 Q851A2_ORYSJ OSJNBb0027B08.3 LOC_Os03g61630 Os03g0831800 OsJ_13238 OSJNBa0078D06.24 OSNPB_030831800 ENOG411DUU0 PUP5 Q9ZUH3 PUP5_ARATH Probable purine permease 5 (AtPUP5) 39174 Probable purine permease 5 (AtPUP5) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863] locus:2047520; AT2G24220 purine permease Os09g0557500 protein (cDNA clone:001-023-D06, full insert sequence) (cDNA clone:J023086J23, full insert sequence) B7E3F9 B7E3F9_ORYSJ Os09g0557500 OSNPB_090557500 ENOG411DUU1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase Os08g0131300 protein A0A0P0XBI0 A0A0P0XBI0_ORYSJ Os08g0131300 OSNPB_080131300 ENOG411DUU6 FTA Q9LX33 FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase subunit alpha) (FTase-alpha) (Ras proteins prenyltransferase subunit alpha) (Type I protein geranyl-geranyltransferase subunit alpha) (GGTase-I-alpha) enlarged shoot apical meristems; increased number of floral organs including sepal petal stamen and carpel; reduced lobing of epidermal leaf cells; short stems; retarded plant growth; late flowering; fewer seeds Dwarf; Slow growth; Low penetrance of fasciated stems and inflorescences; Increased floral organ number; Reduced fertility; Late flowering; Large shoot meristem-S. Yalovsky-2004 FUNCTION: Essential subunit of both the farnesyltransferase and the geranylgeranyltransferase complex. Contributes to the transfer of a farnesyl or geranylgeranyl moiety from farnesyl or geranylgeranyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. {ECO:0000269|PubMed:11500541, ECO:0000269|PubMed:20565889}. MetaCyc:AT3G59380-MONOMER; 2.5.1.58; 2.5.1.59 37985 Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase subunit alpha) (FTase-alpha) (Ras proteins prenyltransferase subunit alpha) (Type I protein geranyl-geranyltransferase subunit alpha) (GGTase-I-alpha) CAAX-protein geranylgeranyltransferase activity [GO:0004662]; farnesyltranstransferase activity [GO:0004311]; protein farnesyltransferase activity [GO:0004660]; protein geranylgeranyltransferase activity [GO:0004661]; protein prenyltransferase activity [GO:0008318]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein farnesylation [GO:0018343]; protein geranylgeranylation [GO:0018344]; protein prenylation [GO:0018342]; regulation of cell shape [GO:0008360]; regulation of meristem development [GO:0048509]; response to water deprivation [GO:0009414] locus:2081177; AT3G59380 Protein farnesyltransferase geranylgeranyltransferase type-1 subunit Os09g0514400 protein (cDNA clone:001-035-C02, full insert sequence) (cDNA clone:006-301-H07, full insert sequence) (cDNA clone:J013000C07, full insert sequence) Q69IM7 Q69IM7_ORYSJ Os09g0514400 Os09g0514400 OsJ_29998 OSNPB_090514400 P0450E05.18 ENOG411DUU7 ASP5 P46248,B9DG21,F4JTH0 AAT5_ARATH,B9DG21_ARATH,F4JTH0_ARATH Aspartate aminotransferase, chloroplastic (EC 2.6.1.1) (Transaminase A),Aspartate aminotransferase (EC 2.6.1.1) FUNCTION: Amino acid aminotransferase important for the metabolism of amino acids and Krebs-cycle related organic acids. No activity with D-Asp or D-Ala as amino donors. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. {ECO:0000269|PubMed:18318836, ECO:0000269|PubMed:7766905, ECO:0000269|PubMed:9535706}. MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes.,MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes. {ECO:0000256|RuleBase:RU000480}. 2.6.1.1 49831,50975,49325 Aspartate aminotransferase, chloroplastic (EC 2.6.1.1) (Transaminase A),Aspartate aminotransferase (EC 2.6.1.1) amyloplast [GO:0009501]; chloroplast [GO:0009507]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; 2-oxoglutarate metabolic process [GO:0006103]; aspartate metabolic process [GO:0006531]; biosynthetic process [GO:0009058]; glutamate metabolic process [GO:0006536],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; stromule [GO:0010319]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409],L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520] locus:2116682; AT4G31990 Aspartate aminotransferase Aspartate aminotransferase (EC 2.6.1.1) Q6KAJ2 Q6KAJ2_ORYSJ Os02g0797500 OJ1004_E04.34 OsJ_08730 OSNPB_020797500 MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes. {ECO:0000256|RuleBase:RU000480}. ENOG411DUU4 ZW10 O48626 ZW10_ARATH Centromere/kinetochore protein zw10 homolog (AtZW10) (MAG2-interacting protein 1) DISRUPTION PHENOTYPE: Accumulation of the precursors of the two major storage proteins albumin 2S and globulin 12S in dry seeds. {ECO:0000269|PubMed:24118572}. FUNCTION: May be required for accurate chromosome segregation. Required for proper maturation of seed storage proteins. Forms a complex with MAG2, MIP2 and MIP3 on the endoplasmic reticulum that may be responsible for efficient transport of seed storage proteins. {ECO:0000269|PubMed:24118572, ECO:0000305}. 83934 Centromere/kinetochore protein zw10 homolog (AtZW10) (MAG2-interacting protein 1) condensed chromosome kinetochore [GO:0000777]; endoplasmic reticulum membrane [GO:0005789]; nucleus [GO:0005634]; RZZ complex [GO:1990423]; spindle [GO:0005819]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; ER to Golgi vesicle-mediated transport [GO:0006888]; mitotic spindle assembly checkpoint [GO:0007094]; protein transport [GO:0015031] locus:2059412; AT2G32900 centromere kinetochore protein zw10 Os11g0545700 protein (Fragment) Q0IS92 Q0IS92_ORYSJ Os11g0545700 OSNPB_110545700 ENOG411DUU5 PME33 Q9STY3 PME33_ARATH Probable pectinesterase/pectinesterase inhibitor 33 [Includes: Pectinesterase inhibitor 33 (Pectin methylesterase inhibitor 33); Pectinesterase 33 (PE 33) (EC 3.1.1.11) (Pectin methylesterase 33) (AtPME33)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G47400-MONOMER; 3.1.1.11 65487 Probable pectinesterase/pectinesterase inhibitor 33 [Includes: Pectinesterase inhibitor 33 (Pectin methylesterase inhibitor 33); Pectinesterase 33 (PE 33) (EC 3.1.1.11) (Pectin methylesterase 33) (AtPME33)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2099565; AT3G47400 pectinesterase NA NA NA NA NA NA NA ENOG411DUUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Os01g0933900 protein (Putative glutathione transferase III(B)) (cDNA clone:001-013-D04, full insert sequence) (cDNA clone:006-212-G06, full insert sequence) Q8LR62 Q8LR62_ORYSJ Os01g0933900 OsJ_04664 OSNPB_010933900 P0423A12.29 ENOG411DUUK SWAP70 Q8VYJ6,F4IPT2 Q8VYJ6_ARATH,F4IPT2_ARATH At2g30880/F7F1.9 (Pleckstrin homology (PH) domain-containing protein),Pleckstrin homology (PH) domain-containing protein 56023,42338 At2g30880/F7F1.9 (Pleckstrin homology (PH) domain-containing protein),Pleckstrin homology (PH) domain-containing protein intracellular [GO:0005622]; plant-type cell wall [GO:0009505]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105] locus:2052831; AT2G30880 domain-containing protein Os03g0666200 protein (Pleckstriny domain-containing protein, putative, expressed) (Putative PH domain containing protein),Os07g0138100 protein (cDNA clone:001-028-H09, full insert sequence),Os07g0138100 protein,Os12g0505950 protein (Fragment),Os05g0128700 protein (Fragment),Os05g0153901 protein (Fragment) Q75H96,Q6ZE09,A0A0P0X2U7,A0A0P0YAJ6,A0A0P0WHK4,A0A0N7KK63 Q75H96_ORYSJ,Q6ZE09_ORYSJ,A0A0P0X2U7_ORYSJ,A0A0P0YAJ6_ORYSJ,A0A0P0WHK4_ORYSJ,A0A0N7KK63_ORYSJ Os03g0666200 LOC_Os03g46340 Os03g0666200 OsJ_12012 OSJNBa0056E06.16 OSNPB_030666200,P0495H05.40-2 Os07g0138100 OsJ_23026 OSNPB_070138100,Os07g0138100 OSNPB_070138100,Os12g0505950 OSNPB_120505950,Os05g0128700 OSNPB_050128700,Os05g0153901 OSNPB_050153901 ENOG411DUUH Q9FLD3,Q9ZUX6,A8MR82 Q9FLD3_ARATH,Q9ZUX6_ARATH,A8MR82_ARATH At5g05210/K2A11_8 (Gb|AAC73025.1) (Surfeit locus protein 6),Nucleolar matrix protein-related (Surfeit locus protein 6) (Uncharacterized protein At2g27750),Surfeit locus protein 6 45142,21666,44251 At5g05210/K2A11_8 (Gb|AAC73025.1) (Surfeit locus protein 6),Nucleolar matrix protein-related (Surfeit locus protein 6) (Uncharacterized protein At2g27750),Surfeit locus protein 6 cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; DNA binding [GO:0003677]; RNA binding [GO:0003723]; ribosomal large subunit biogenesis [GO:0042273]; ribosomal small subunit biogenesis [GO:0042274],cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; DNA binding [GO:0003677]; RNA binding [GO:0003723]; structural constituent of virion [GO:0039660]; ribosomal large subunit biogenesis [GO:0042273]; ribosomal small subunit biogenesis [GO:0042274] locus:2156809;,locus:2042119; AT5G05210,AT2G27750 Surfeit locus protein 6 Os05g0372200 protein Q6I5Q5 Q6I5Q5_ORYSJ Os05g0372200 OsJ_18306 OSJNBa0025P09.6 OSNPB_050372200 ENOG411DUUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein NA NA NA NA NA NA NA ENOG411DUUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 29 (sialyltransferase) Sialyltransferase-like protein 2 (OsSTLP2) (EC 2.4.-.-) Q2QXM3 STLP2_ORYSJ STLP2 STV1 Os12g0151500 LOC_Os12g05550 FUNCTION: Does not possess sialyltransferase-like activity in vitro. {ECO:0000269|PubMed:16452316}. ENOG411DUUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0623600 protein (cDNA clone:001-118-G12, full insert sequence),Expressed protein (Os03g0387800 protein) (cDNA clone:001-021-A03, full insert sequence) (cDNA clone:J033058I20, full insert sequence) Q7XI42,Q6AVF2 Q7XI42_ORYSJ,Q6AVF2_ORYSJ P0524E08.116 Os07g0623600 OsJ_25180 OSNPB_070623600,LOC_Os03g27010 Os03g0387800 OSJNBb0058G04.7 OSNPB_030387800 ENOG411DUUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0119700 protein) (cDNA clone:J023130K21, full insert sequence),Os11g0119900 protein (Fragment),Os12g0119350 protein (Fragment) Q2QYH2,A0A0P0XYU3,A0A0P0Y6I9 Q2QYH2_ORYSJ,A0A0P0XYU3_ORYSJ,A0A0P0Y6I9_ORYSJ LOC_Os12g02690 Os12g0119700 OsJ_35031 OSNPB_120119700,Os11g0119900 OSNPB_110119900,Os12g0119350 OSNPB_120119350 ENOG411DUUC Q147P6,F4JTD8 Q147P6_ARATH,F4JTD8_ARATH Alpha/beta-Hydrolases superfamily protein (At4g25770),Alpha/beta-Hydrolases superfamily protein 46763,47109 Alpha/beta-Hydrolases superfamily protein (At4g25770),Alpha/beta-Hydrolases superfamily protein carboxylic ester hydrolase activity [GO:0052689]; cellular lipid metabolic process [GO:0044255],hydrolase activity [GO:0016787] locus:2117527; AT4G25770 Putative serine esterase (DUF676) Os08g0143700 protein Q6ZDM1 Q6ZDM1_ORYSJ Os08g0143700 OsJ_26017 OSNPB_080143700 P0025F03.21 ENOG411DUUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0558600 protein (cDNA clone:001-115-G08, full insert sequence) Q6YVX1 Q6YVX1_ORYSJ Os02g0558600 Os02g0558600 OSJNBb0038F20.19 OSNPB_020558600 ENOG411DUUF Q84K13 Q84K13_ARATH Pectin lyase-like superfamily protein (Putative polygalacturonase) ARA:AT4G33440-MONOMER; 52201 Pectin lyase-like superfamily protein (Putative polygalacturonase) extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2119156; AT4G33440 Glycoside hydrolase family 28 protein polygalacturonase (pectinase) family protein Os08g0107300 protein (Putative exo-poly-alpha-D-galacturonosidase) Q6ZD71 Q6ZD71_ORYSJ Os08g0107300 OSNPB_080107300 P0450B04.19 ENOG411DUUG Q9MAC6 Q9MAC6_ARATH Pre-rRNA-processing ESF1-like protein (T4P13.15 protein) 81493 Pre-rRNA-processing ESF1-like protein (T4P13.15 protein) cytosol [GO:0005829]; nucleus [GO:0005634] locus:2102127; AT3G01160 Pre-rRNA-processing protein Os07g0531700 protein (cDNA clone:J023094A01, full insert sequence) Q7XHX9 Q7XHX9_ORYSJ P0681F05.134 Os07g0531700 OSNPB_070531700 ENOG411DUUD Q9ZQG9 E1314_ARATH Glucan endo-1,3-beta-glucosidase 14 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) ARA:AT2G27500-MONOMER; 3.2.1.39 44074 Glucan endo-1,3-beta-glucosidase 14 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; extracellular region [GO:0005576]; nucleus [GO:0005634]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; defense response [GO:0006952] locus:2038583; AT2G27500 glucan endo-1-3-beta-glucosidase OSJNBa0073L04.8 protein (Os04g0412300 protein),Os01g0860800 protein (Putative elicitor inducible beta-1,3-glucanase NtEIG-E76) (cDNA clone:J023049H08, full insert sequence) (cDNA clone:J033118B10, full insert sequence),Os04g0412300 protein (cDNA clone:J023078I08, full insert sequence),Os02g0532900 protein (Putative beta-1,3-glucanase),Os02g0532900 protein (Fragment),Os05g0443400 protein,Os05g0443400 protein (Fragment) Q7XVG8,Q5N7B6,Q0JDD4,Q6ESE5,A0A0P0VJY4,A0A0P0WN08,A0A0P0WN41 Q7XVG8_ORYSJ,Q5N7B6_ORYSJ,Q0JDD4_ORYSJ,Q6ESE5_ORYSJ,A0A0P0VJY4_ORYSJ,A0A0P0WN08_ORYSJ,A0A0P0WN41_ORYSJ OSJNBa0073L04.8 Os04g0412300 OSNPB_040412300,P0489B03.44-1 P0679C12.34-1 Os01g0860800 OsJ_04150 OSNPB_010860800,Os04g0412300 Os04g0412300 OSNPB_040412300,Os02g0532900 OSNPB_020532900 P0605D08.32,Os02g0532900 OSNPB_020532900,Os05g0443400 OSNPB_050443400 ENOG411DUUE WAKL8 Q9SA25,A0A1P8AWN7 WAKLG_ARATH,A0A1P8AWN7_ARATH Wall-associated receptor kinase-like 8 (EC 2.7.11.-),Wall-associated kinase family protein FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. 2.7.11.- 81160,80134 Wall-associated receptor kinase-like 8 (EC 2.7.11.-),Wall-associated kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674] locus:2032875; AT1G16260 wall-associated receptor kinase-like NA NA NA NA NA NA NA ENOG411DUUZ TDT Q8LG88 TDT_ARATH Tonoplast dicarboxylate transporter (AttDT) (Sodium-dicarboxylate cotransporter-like) (AtSDAT) (Vacuolar malate transporter) No observable phenotype. The mutant has less malate and fumarate in the vacuole. The mutant showed stronger inhibition of oxygen evolution at low pH values. Low malate levels in leaves-H. Neuhaus-2003 FUNCTION: Putative carrier protein indirectly involved in the uptake of malate and fumarate to the vacuole, probably by regulating the energization across the tonoplast. Uptake of malate to vacuoles is inhibited by citrate and by the uncoupler carbonyl-cyanide m-chlorophenylhydrazone, but seems to be not affected by sodium. Critical for pH homeostasis. {ECO:0000269|PubMed:12947042, ECO:0000269|PubMed:15728336}. R-ATH-433137; 58098 Tonoplast dicarboxylate transporter (AttDT) (Sodium-dicarboxylate cotransporter-like) (AtSDAT) (Vacuolar malate transporter) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; malate transmembrane transporter activity [GO:0015140]; malate transport [GO:0015743]; regulation of intracellular pH [GO:0051453]; sodium ion transport [GO:0006814] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:12947042}. locus:2168988; AT5G47560 tonoplast dicarboxylate Os08g0503700 protein (Putative sodium-dicarboxylate cotransporter) (cDNA clone:J013000P05, full insert sequence),Os09g0484900 protein (cDNA clone:001-202-D02, full insert sequence) (cDNA clone:J013123J03, full insert sequence) Q6ZFH7,Q0J0T0 Q6ZFH7_ORYSJ,Q0J0T0_ORYSJ Os08g0503700 OJ1506_F01.29 OSNPB_080503700,Os09g0484900 Os09g0484900 OSNPB_090484900 ENOG411DUUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os01g0608700 protein,Os01g0143600 protein,Os11g0681100 protein,Os02g0299800 protein A0A0P0V523,A0A0P0UY34,A0A0P0Y5B0,A0A0P0VHX8 A0A0P0V523_ORYSJ,A0A0P0UY34_ORYSJ,A0A0P0Y5B0_ORYSJ,A0A0P0VHX8_ORYSJ Os01g0608700 OSNPB_010608700,Os01g0143600 OSNPB_010143600,Os11g0681100 OSNPB_110681100,Os02g0299800 OSNPB_020299800 ENOG411DUUY ALMT9 Q9LS46 ALMT9_ARATH Aluminum-activated malate transporter 9 (AtALMT9) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18005230}. no visible phenotype although the isolated leaf mesophyll protoplasts contain 20% less malate. Low malate levels; Decreased inward electrical currents in vacuoles; No other phenotypes detected-E. Martinoia-2007 FUNCTION: Vacuolar malate channel. Has a higher selectivity for malate than for fumarate. Exhibits also a weak chloride conductance. {ECO:0000269|PubMed:18005230}. 67046 Aluminum-activated malate transporter 9 (AtALMT9) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; anion channel activity [GO:0005253]; malate transmembrane transporter activity [GO:0015140]; malate transport [GO:0015743] TISSUE SPECIFICITY: Expressed in hypocotyls, leaves, roots, flowers, sepals and stamina. In leaves, expressed almost exclusively in mesophyll cells. {ECO:0000269|PubMed:18005230}. locus:2095067; AT3G18440 Aluminum-activated malate transporter Os02g0730600 protein (Putative aluminum-activated malate transporter),Aluminum-activated malate transporter-like (Os06g0268800 protein) (cDNA clone:J023012D20, full insert sequence),Os06g0268800 protein (Fragment),Os06g0269000 protein Q6YWQ1,Q5Z6M4,A0A0P0WVD5,A0A0P0WVK8 Q6YWQ1_ORYSJ,Q5Z6M4_ORYSJ,A0A0P0WVD5_ORYSJ,A0A0P0WVK8_ORYSJ Os02g0730600 OSJNBa0072H09.40 OSNPB_020730600 P0617A09.19,Os06g0268800 P0528B02.45-1 Os06g0268800 OSJNBa0084K06.5-1 OSNPB_060268800,Os06g0268800 OSNPB_060268800,Os06g0269000 OSNPB_060269000 ENOG411DUUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription NA NA NA NA NA NA NA ENOG411DUUS VTE6 Q9SYM0,F4IBS8 VTE6_ARATH,F4IBS8_ARATH Protein VTE6, chloroplastic (Phytyl-P kinase) (EC 2.7.4.-) (Vitamin E deficient 6),Uncharacterized protein DISRUPTION PHENOTYPE: Lethal when homozygous. Tocopherol-deficient plants are unable to grow photoautotrophically and infertile. Vte5 and vte6 double mutants can grow photoautotrophically and display a stay-green phenotype with strongly delayed senescence and an extended lifetime. {ECO:0000269|PubMed:26452599}. FUNCTION: Phytyl-phosphate kinase catalyzing the conversion of phytyl-monophosphate to phytyl-diphosphate. Involved in the activation and reutilization of phytol from chlorophyll degradation in plant metabolism, including tocopherol biosynthesis. {ECO:0000269|PubMed:26452599}. MISCELLANEOUS: Overexpression of VTE6 results in increased phytyl-PP and tocopherol levels in seeds. {ECO:0000269|PubMed:26452599}. PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis. {ECO:0000269|PubMed:26452599}. 2.7.4.- 34874,35833 Protein VTE6, chloroplastic (Phytyl-P kinase) (EC 2.7.4.-) (Vitamin E deficient 6),Uncharacterized protein chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; transferase activity [GO:0016740]; vitamin E biosynthetic process [GO:0010189],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536] locus:2202955; AT1G78620 Integral membrane protein DUF92 Os01g0729100 protein (cDNA clone:006-208-F03, full insert sequence) (cDNA clone:J013159G20, full insert sequence),Os01g0729100 protein (Fragment) Q5JNF8,A0A0P0V7Q5 Q5JNF8_ORYSJ,A0A0P0V7Q5_ORYSJ Os01g0729100 OSNPB_010729100 P0435H01.7 P0456A01.24,Os01g0729100 OSNPB_010729100 ENOG411DUUP WRKY40 Q9SAH7,F4JA74 WRK40_ARATH,F4JA74_ARATH Probable WRKY transcription factor 40 (WRKY DNA-binding protein 40),WRKY family transcription factor sixfold reduction in the growth of the bacterial pathogen PstDC3000,Ninefold reduction in the growth of the bacterial pathogen PstDC3000. extensive chlorosis. more susceptible to the fungal pathogen B. cinerea than the double mutants.,Mutant is almost fully resistant to the virulent powdery mildew Golovinomyces orontii.,Susceptibility to the virulent powdery mildew Golovinomyces orontii remains unchanged compared to wild type.,little reduction in the growth of the bacterial pathogen PstDC3000,no reduction in the growth of the bacterial pathogen PstDC3000. FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 33696,20612 Probable WRKY transcription factor 40 (WRKY DNA-binding protein 40),WRKY family transcription factor nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of defense response [GO:0031347]; response to chitin [GO:0010200]; response to molecule of bacterial origin [GO:0002237]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2025687;,locus:2079083; AT1G80840,AT3G32090 Transcription factor WRKY transcription factor WRKY71 (OsWRKY71) Q6QHD1 WRK71_ORYSJ WRKY71 wrky38 Os02g0181300 OJ1297_C09.15 DISRUPTION PHENOTYPE: Impaired repression activity on gibberellic acid (GA)-induced promoters. {ECO:0000269|PubMed:16623886}. FUNCTION: Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:18175928, PubMed:15047897, PubMed:16623886). Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1 (PubMed:15047897, PubMed:16623886, PubMed:19199048). Regulates, probably indirectly, the activation of defense-related genes such as GF14E during defense response (PubMed:18175928, PubMed:26851365, PubMed:26467468). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Confers resistance to the virulent bacterial pathogen Xoo 13751, probably via the regulation of NPR1 and PR1b defense signaling pathways (PubMed:16919842). {ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16623886, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:18175928, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:26467468, ECO:0000269|PubMed:26851365}. ENOG411DUUQ BEH2 Q94A43 BEH2_ARATH BES1/BZR1 homolog protein 2 34195 BES1/BZR1 homolog protein 2 DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; transcription, DNA-templated [GO:0006351] AT4G36780 BES1 BZR1 homolog protein Protein BZR1 homolog 1 (OsBZR1) (Protein BRASSINAZOLE-RESISTANT 1 homolog 1),Os01g0739100 protein Q7XI96,A0A0P0V807 BZR1_ORYSJ,A0A0P0V807_ORYSJ BZR1 Os07g0580500 LOC_Os07g39220 OsJ_24880 P0453G03.22,Os01g0739100 OSNPB_010739100 FUNCTION: Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid (BR) biosynthetic genes (PubMed:17699623, PubMed:19220793). May act as transcriptional repressor by binding the brassinosteroid-response element (BREE) (5'-CGTG(T/C)G-3') in the promoter of DLT (AC Q9LWU9), another positive regulator of BR signaling (PubMed:19220793). Acts as transcriptional repressor of LIC, a negative regulator of BR signaling, by binding to the BRRE element of its promoter. BZR1 and LIC play opposite roles in BR signaling and regulation of leaf bending (PubMed:22570626). {ECO:0000269|PubMed:17699623, ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22570626}. MISCELLANEOUS: Plants silencing BZR1 are dwarf with erect leaves, and have reduced brassinosteroid sensitivity and altered expression of brassinosteroid-responsive genes. {ECO:0000269|PubMed:17699623}. ENOG411DUUV MNB8.14 Q5XEY4 Q5XEY4_ARATH At5g53080 (Tetratricopeptide repeat (TPR)-like superfamily protein) R-ATH-6811434;R-ATH-983189; 63110 At5g53080 (Tetratricopeptide repeat (TPR)-like superfamily protein) locus:2168387; AT5G53080 TPR NA NA NA NA NA NA NA ENOG411DUUW Q944L9,A0A1P8B8C9,A0A1P8AQQ2,F4I3A0,F4JH02 Q944L9_ARATH,A0A1P8B8C9_ARATH,A0A1P8AQQ2_ARATH,F4I3A0_ARATH,F4JH02_ARATH At1g17970/F2H15_16 (RING/U-box superfamily protein),RING/U-box superfamily protein 41618,20143,30076,26635,20769 At1g17970/F2H15_16 (RING/U-box superfamily protein),RING/U-box superfamily protein locus:2030933;,locus:2203063;,locus:2126906; AT1G17970,AT1G36950,AT4G00070 Zinc finger C3HC4 type (RING finger) Os05g0550000 protein Q6L4H2 Q6L4H2_ORYSJ P0560C03.4 Os05g0550000 OSNPB_050550000 ENOG411DUUT ET2,ET3 F4K933,Q9FJT6 ET2_ARATH,ET3_ARATH Protein EFFECTOR OF TRANSCRIPTION 2 (AtET2),Protein EFFECTOR OF TRANSCRIPTION 3 (AtET3) DISRUPTION PHENOTYPE: Reduced levels of lignin in leaves and stems (PubMed:17991462). Reduced seed germination rate (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. FUNCTION: Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. 54589,29377 Protein EFFECTOR OF TRANSCRIPTION 2 (AtET2),Protein EFFECTOR OF TRANSCRIPTION 3 (AtET3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; supercoiled DNA binding [GO:0097100]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of seed dormancy process [GO:2000033]; transcription, DNA-templated [GO:0006351]; xylem development [GO:0010089],cytoplasm [GO:0005737] DEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269|PubMed:22226340}. TISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269|PubMed:17991462}. locus:2165026;,locus:2165011; AT5G56780,AT5G56770 NA Os07g0586700 protein (Putative probable transcription repressor HOTR) Q8H2Y0 Q8H2Y0_ORYSJ OJ1113_E01.111 Os07g0586700 OsJ_24924 OSNPB_070586700 ENOG411DUUU ARPC1A,ARPC1B O80856,Q9SJW6,A0A1P8AX56,F4IPT5 ARC1A_ARATH,ARC1B_ARATH,A0A1P8AX56_ARATH,F4IPT5_ARATH Actin-related protein 2/3 complex subunit 1A (Actin-related protein C1) (Actin-related protein C1A) (Arp2/3 complex 41 kDa subunit) (p41-ARC),Actin-related protein 2/3 complex subunit 1B (Actin-related protein C1) (Actin-related protein C1B) (Arp2/3 complex 41 kDa subunit) (p41-ARC),Actin-related protein C1B,Actin-related protein C1A FUNCTION: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. {ECO:0000250}.,FUNCTION: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. {ECO:0000256|PIRNR:PIRNR038093}. R-ATH-2029482;R-ATH-5663213; 41956,41819,41966,42218 Actin-related protein 2/3 complex subunit 1A (Actin-related protein C1) (Actin-related protein C1A) (Arp2/3 complex 41 kDa subunit) (p41-ARC),Actin-related protein 2/3 complex subunit 1B (Actin-related protein C1) (Actin-related protein C1B) (Arp2/3 complex 41 kDa subunit) (p41-ARC),Actin-related protein C1B,Actin-related protein C1A Arp2/3 protein complex [GO:0005885]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; actin filament binding [GO:0051015]; actin filament organization [GO:0007015]; Arp2/3 complex-mediated actin nucleation [GO:0034314],Arp2/3 protein complex [GO:0005885]; Arp2/3 complex-mediated actin nucleation [GO:0034314] TISSUE SPECIFICITY: Expressed at low levels in all tissues with a relatively highest expression in inflorescences. {ECO:0000269|PubMed:12913159}. locus:2052871;,locus:2042491; AT2G30910,AT2G31300 Actin-related protein 2 3 complex subunit Actin-related protein 2/3 complex subunit,Os02g0817200 protein (Fragment) Q6K699,A0A0P0VRD1 Q6K699_ORYSJ,A0A0P0VRD1_ORYSJ Os02g0817200 Os02g0817200 OJ1136_C12.12 OsJ_08878 OSNPB_020817200 P0643F09.32,Os02g0817200 OSNPB_020817200 FUNCTION: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. {ECO:0000256|PIRNR:PIRNR038093}. ENOG411EHIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Os06g0319900 protein Q5Z9Z4 Q5Z9Z4_ORYSJ Os06g0319900 OsJ_21151 OSNPB_060319900 P0592B08.31 ENOG411EHIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHID Q9LR11 Q9LR11_ARATH F10A5.9 10928 F10A5.9 locus:4515102759; AT1G75717 NA NA NA NA NA NA NA NA ENOG411EHIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHIM Q9C7T1 Q9C7T1_ARATH Uncharacterized protein T9N14.5 14988 Uncharacterized protein T9N14.5 locus:2206996; AT1G72240 NA NA NA NA NA NA NA NA ENOG411EHIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EHIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411EHIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411EHIS MIF21.10 Q9LUB3 Q9LUB3_ARATH Prolamin-like protein (DUF1278) 11531 Prolamin-like protein (DUF1278) locus:2164758; AT5G48210 Pfam:DUF1278 NA NA NA NA NA NA NA ENOG411EHIT ATTI4,ATTI1 Q8RYE7,Q42328 DF196_ARATH,DF195_ARATH Defensin-like protein 196 (Trypsin inhibitor ATTI-4),Defensin-like protein 195 (ATTp) (Trypsin inhibitor ATTI-1) (diDi 4T-1) 10671,9885 Defensin-like protein 196 (Trypsin inhibitor ATTI-4),Defensin-like protein 195 (ATTp) (Trypsin inhibitor ATTI-1) (diDi 4T-1) extracellular region [GO:0005576]; ion channel inhibitor activity [GO:0008200]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],extracellular region [GO:0005576]; ion channel inhibitor activity [GO:0008200]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:505006315;,locus:2058250; AT2G43535,AT2G43510 Scorpion toxin-like domain NA NA NA NA NA NA NA ENOG411EHIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF815) NA NA NA NA NA NA NA ENOG411EHIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os12g0598200 protein A0A0P0YC64 A0A0P0YC64_ORYSJ Os12g0598200 OSNPB_120598200 ENOG411EHIZ Q8L9R7 Q8L9R7_ARATH Sporozoite surface protein-like protein 16799 Sporozoite surface protein-like protein locus:2079817; AT3G05460 NA NA NA NA NA NA NA NA ENOG411EHI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0079A21.5 protein (OSJNBb0038F03.16 protein) (Os04g0545300 protein) Q7FAI8 Q7FAI8_ORYSJ OSJNBa0079A21.5 Os04g0545300 OsJ_15661 OSJNBb0038F03.16 OSNPB_040545300 ENOG411EHI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EHI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6CQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3464) Os02g0773500 protein (cDNA clone:001-106-A07, full insert sequence) Q6Z7L7 Q6Z7L7_ORYSJ Os02g0773500 Os02g0773500 OJ1448_G06.1 OJ1611_C08.29 OsJ_08558 OSNPB_020773500 ENOG411E0IR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH NA NA NA NA NA NA NA ENOG411DSG9 ISPG,HDS F4K0E8,B3H725 ISPG_ARATH,B3H725_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (EC 1.17.7.1) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) (Protein CHLOROPLAST BIOGENESIS 4) (Protein CONSTITUTIVE SUBTILISIN 3),4-hydroxy-3-methylbut-2-enyl diphosphate synthase DISRUPTION PHENOTYPE: Albino phenotype and seedling lethal when homozygous. The phenotype is caused by an early arrest in chloroplast differentiation. {ECO:0000269|PubMed:15133149, ECO:0000269|PubMed:18948055}. Dwarf curled leaves increased accumulation of conjugated salicylide glucoside (SAG) and salicyclic acid (SA) under some conditions constitutive expression of SA-induced genes enhanced resistance to biotrophic pathogens. Dwarf; Curled leaves; Resistant to Hyaloperonospora parasitica-P. Vera-2005 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Is essential for chloroplast development and required for the salicylic acid (SA)-mediated disease resistance to biotrophic pathogens. {ECO:0000269|PubMed:11943178, ECO:0000269|PubMed:15133149, ECO:0000269|PubMed:15650872, ECO:0000269|PubMed:16167903, ECO:0000269|PubMed:16480720}. PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 5/6. MetaCyc:AT5G60600-MONOMER; 1.17.7.1 82256,80422 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (EC 1.17.7.1) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) (Protein CHLOROPLAST BIOGENESIS 4) (Protein CONSTITUTIVE SUBTILISIN 3),4-hydroxy-3-methylbut-2-enyl diphosphate synthase chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; 4 iron, 4 sulfur cluster binding [GO:0051539]; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [GO:0046429]; iron ion binding [GO:0005506]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288]; response to bacterium [GO:0009617]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862]; terpenoid biosynthetic process [GO:0016114],4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [GO:0046429]; iron ion binding [GO:0005506]; terpenoid biosynthetic process [GO:0016114] TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, flowers and siliques (at protein level). {ECO:0000269|PubMed:15133149}. locus:2175851; AT5G60600 4-hydroxy-3-methylbut-2-en-1-yl diphosphate 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (EC 1.17.7.1) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Q6K8J4 ISPG_ORYSJ ISPG Os02g0603800 LOC_Os02g39160 OJ1669_F01.30 OsJ_07430 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Is essential for chloroplast development (By similarity). {ECO:0000250}. ENOG411DSG1 EOL1,ETO1 Q9ZQX6,O65020,F4J4I9 ETOL1_ARATH,ETO1_ARATH,F4J4I9_ARATH ETO1-like protein 1 (Ethylene overproducer 1-like protein 1),Ethylene-overproduction protein 1 (Protein ETHYLENE OVERPRODUCER 1) (Protein ETO1),Tetratricopeptide repeat (TPR)-containing protein DISRUPTION PHENOTYPE: Compact rosette with smaller leaves, reduced petiole lengths and shorter inflorescences. {ECO:0000269|PubMed:18808454}. Defective quiescent center (QC) cellular organization resulting from deregulated QC cell division. Necrotic lesions in response to ozone-K. Davis-2002 FUNCTION: Possible regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes (By similarity). {ECO:0000250, ECO:0000269|PubMed:18808454}.,FUNCTION: Essential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. {ECO:0000269|PubMed:15118728, ECO:0000269|PubMed:16091151, ECO:0000269|PubMed:18808454}. PATHWAY: Protein modification; protein ubiquitination. 101043,107040,107999 ETO1-like protein 1 (Ethylene overproducer 1-like protein 1),Ethylene-overproduction protein 1 (Protein ETHYLENE OVERPRODUCER 1) (Protein ETO1),Tetratricopeptide repeat (TPR)-containing protein intracellular [GO:0005622]; ethylene-activated signaling pathway [GO:0009873]; protein ubiquitination [GO:0016567]; regulation of ethylene biosynthetic process [GO:0010364],intracellular [GO:0005622]; ethylene-activated signaling pathway [GO:0009873]; protein ubiquitination [GO:0016567],cellular response to phosphate starvation [GO:0016036]; regulation of ethylene biosynthetic process [GO:0010364]; regulation of post-embryonic root development [GO:2000069]; stem cell division [GO:0017145]; sugar mediated signaling pathway [GO:0010182] TISSUE SPECIFICITY: Predominantly expressed in flowers. {ECO:0000269|PubMed:18808454}. locus:2132402;,locus:2074343; AT4G02680,AT3G51770 Ethylene-overproduction protein Ethylene-overproduction protein 1, putative, expressed (Os03g0294700 protein) (cDNA clone:J023139C14, full insert sequence),Os07g0178100 protein (Tetratricopeptide repeat (TPR)-containing protein-like protein) (cDNA clone:J013042D06, full insert sequence) (cDNA clone:J013153E21, full insert sequence),Os11g0585900 protein (Fragment) Q10MU8,Q69W85,Q0IRY6 Q10MU8_ORYSJ,Q69W85_ORYSJ,Q0IRY6_ORYSJ Os03g0294700 LOC_Os03g18360 OSNPB_030294700,OJ1361_E02.109 Os07g0178100 OsJ_23309 OSNPB_070178100,Os11g0585900 Os11g0585900 OSNPB_110585900 ENOG411DSGA AP5M Q8W0Z6,A0A1P8AYQ6,F4IFJ0 AP5M_ARATH,A0A1P8AYQ6_ARATH,F4IFJ0_ARATH AP-5 complex subunit mu (Adaptor protein complex AP-5 subunit mu) (Adaptor protein-5 mu-adaptin) (Adaptor-related protein complex 5 subunit mu) (Mu5-adaptin),Clathrin adaptor complexes medium subunit family protein 66705,61642,45812 AP-5 complex subunit mu (Adaptor protein complex AP-5 subunit mu) (Adaptor protein-5 mu-adaptin) (Adaptor-related protein complex 5 subunit mu) (Mu5-adaptin),Clathrin adaptor complexes medium subunit family protein clathrin adaptor complex [GO:0030131]; cytoplasmic vesicle membrane [GO:0030659]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2051436; AT2G20790 adaptor complexes medium subunit family protein Os12g0528300 protein A0A0P0YAS5 A0A0P0YAS5_ORYSJ Os12g0528300 OSNPB_120528300 ENOG411EK2X UP9 Q67XR9,C0Z2A9,A0A1P8AQV0,A0A1P8AQN1,F4HZW7,F4HZW6,F4HZW3 Q67XR9_ARATH,C0Z2A9_ARATH,A0A1P8AQV0_ARATH,A0A1P8AQN1_ARATH,F4HZW7_ARATH,F4HZW6_ARATH,F4HZW3_ARATH At1g29120 (Hydrolase-like protein family) (mRNA, clone: RAFL25-28-O12),AT1G29120 protein (Hydrolase-like protein family),Hydrolase-like protein family 49920,50049,47630,35008,43300,42680,50011 At1g29120 (Hydrolase-like protein family) (mRNA, clone: RAFL25-28-O12),AT1G29120 protein (Hydrolase-like protein family),Hydrolase-like protein family hydrolase activity [GO:0016787],peroxisome [GO:0005777]; carboxylic ester hydrolase activity [GO:0052689]; cellular lipid metabolic process [GO:0044255] locus:2029904; AT1G29120 Putative serine esterase (DUF676) NA NA NA NA NA NA NA ENOG411DSGF SWA1 O82266 SWA1_ARATH Protein SLOW WALKER 1 (Protein EMBRYO SAC DEVELOPMENT ARREST 13) (Protein EMBRYO SAC DEVELOPMENT ARREST 19) DISRUPTION PHENOTYPE: Embryo sac development arrest at two-, four-, or eight-nucleate stages, associated with abnormal nuclear numbers and positions in embryo sac, aberrant embryo sacs and unfused polar nuclei (PubMed:15634699). Disrupted progression of the mitotic division cycles of the female gametophyte leading to an impaired synchrony of female gametophyte development (PubMed:15980260). Reduced root growth and accumulation of unprocessed 18S pre-rRNA (PubMed:15980260). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:15980260}. Plants heterozygous for the swa1 mutation had shorter siliques aborted ovules and showed a semisterile phenotype. The mutation mainly impaired female gametogenesis and caused a minor defect during male gametogenesis. Confocal microscopy revealed that megagametophyte development was asynchronous in swa1 causing embryo sacs to arrest at two- four- or eight-nucleate stages within the same pistil. A small fraction of the swa1 embryo sacs were able to develop into functional female gametophytes. The swa1 mutation also showed a slight reduction in penetrance through the male gametophyte although the pollen grains were morphologically normal. Null: Complete female gametophyte defective; Male gametophyte defective; Knockdown: Short roots-W. Yang-2005 FUNCTION: Essential protein required for nuclear division and organization during embryo sac development in female gametophyte, probably by promoting rRNA biogenesis essential for the progression of the mitotic division cycles during gametogenesis (PubMed:15634699, PubMed:15980260). Involved in nucleolar processing of pre-18S ribosomal RNA (PubMed:15980260). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:15980260}. R-ATH-6791226; 58903 Protein SLOW WALKER 1 (Protein EMBRYO SAC DEVELOPMENT ARREST 13) (Protein EMBRYO SAC DEVELOPMENT ARREST 19) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; cell cycle [GO:0007049]; cell division [GO:0051301]; embryo sac development [GO:0009553]; megagametogenesis [GO:0009561]; rRNA processing [GO:0006364] DEVELOPMENTAL STAGE: Accumulates in root tips and lateral root primordia. Present in young leaf and stem vascular tissues. Expressed throughout pollen development from very young floral buds to dehisced anthers, especially in microsporogenous cells, microspores, and mature pollen grains. In female reproductive organs, detected in megaspores and embryo sacs from one-nucleate to seven-celled embryo sacs. {ECO:0000269|PubMed:15980260}. TISSUE SPECIFICITY: Expressed in cells undergoing active cell divisions, including functional megaspores and the female gametophytic cells. Accumulates in roots, stems, leaves, inflorescences and siliques. {ECO:0000269|PubMed:15980260}. locus:2043333; AT2G47990 U3 small nucleolar RNA-associated protein Os07g0224900 protein (Transducin /WD-40 repeat protein family-like protein) (cDNA clone:J023052H04, full insert sequence),Os07g0224900 protein Q8LH68,Q0D7P8 Q8LH68_ORYSJ,Q0D7P8_ORYSJ P0668C05.122 Os07g0224900 OSJNBa0066H10.103 OSNPB_070224900,Os07g0224900 Os07g0224900 OSNPB_070224900 ENOG411DSGE SAC9 Q7XZU0,F4J9G1,F4J9G0,A0A1I9LPE6 SAC9_ARATH,F4J9G1_ARATH,F4J9G0_ARATH,A0A1I9LPE6_ARATH Probable phosphoinositide phosphatase SAC9 (AtSAC9) (EC 3.1.3.-) (Protein SUPPRESSOR OF ACTIN 9) (SAC domain protein 9),SacI homology domain-containing protein / WW domain-containing protein DISRUPTION PHENOTYPE: Characteristics of a constitutive stress response, including dwarfism, closed stomata, and accumulation of anthocyanin and reactive-oxygen species. Accumulates elevated levels of PtdIns(4,5)P(2) and Ins(1,4,5)P(3) in roots. Hypersensitivity to salt stress. Late flowering, shorter roots with less lateral branching and low fertility. Abnormalities of cell wall and membrane structures in primary root cells. {ECO:0000269|PubMed:15923324, ECO:0000269|PubMed:16453058, ECO:0000269|PubMed:21698459}. slow growing small leaves with short petioles accumulates anthocyanin in the leaves small and constitutively closed guard cells shorter primary roots fewer lateral roots hypersensitive to osmotic stress cold stress and high-light stress Slow growth; Upward-bending, purple leaves-D. DeWald-2005 FUNCTION: Probable phosphoinositide phosphatase that could be involved in stress signaling. {ECO:0000269|PubMed:15923324}. 3.1.3.- 180063,155374,181925,157714 Probable phosphoinositide phosphatase SAC9 (AtSAC9) (EC 3.1.3.-) (Protein SUPPRESSOR OF ACTIN 9) (SAC domain protein 9),SacI homology domain-containing protein / WW domain-containing protein phosphoric ester hydrolase activity [GO:0042578],intracellular [GO:0005622]; phosphoric ester hydrolase activity [GO:0042578]; phosphatidylinositol metabolic process [GO:0046488]; phosphatidylinositol-mediated signaling [GO:0048015]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Ubiquitous. Most abundant in the roots with lower expression levels throughout the leaves and shoot. {ECO:0000269|PubMed:12805586, ECO:0000269|PubMed:15923324}. locus:2080427; AT3G59770 SacI homology domain Os01g0355600 protein (Fragment) Q0JMW7 Q0JMW7_ORYSJ Os01g0355600 Os01g0355600 OSNPB_010355600 ENOG411DY6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic leucine-zipper C terminal Os12g0601800 protein A0A0N7KUB6 A0A0N7KUB6_ORYSJ Os12g0601800 OSNPB_120601800 ENOG411E5G3 BHLH148 Q9C8Z9 BH148_ARATH Transcription factor bHLH148 (ATBS1 interacting factor 2) (Basic helix-loop-helix protein 148) (AtbHLH148) (bHLH 148) (Transcription factor EN 143) (bHLH transcription factor bHLH148) FUNCTION: Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269|PubMed:20023194}. 24256 Transcription factor bHLH148 (ATBS1 interacting factor 2) (Basic helix-loop-helix protein 148) (AtbHLH148) (bHLH 148) (Transcription factor EN 143) (bHLH transcription factor bHLH148) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2084339; AT3G06590 Transcription factor NA NA NA NA NA NA NA ENOG411E5G2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0362700 protein) (cDNA clone:002-148-A07, full insert sequence),Os03g0196250 protein Q8S6P0,B9F5P5 Q8S6P0_ORYSJ,B9F5P5_ORYSJ LOC_Os10g21860 Os10g0362700 OsJ_31234 OSJNBa0073L01.8 OSNPB_100362700,Os03g0196250 OsJ_09767 OSNPB_030196250 ENOG411E5G1 MXK3.7 Q0WN19 Q0WN19_ARATH At5g64850 (Sorbin/SH3 domain protein) (Uncharacterized protein At5g64850) 13324 At5g64850 (Sorbin/SH3 domain protein) (Uncharacterized protein At5g64850) plasma membrane [GO:0005886] locus:2177704; AT5G64850 Cleavage site for pathogenic type III effector avirulence factor Avr Expressed protein (Os10g0405300 protein) Q338G4 Q338G4_ORYSJ LOC_Os10g26540 Os10g0405300 OSNPB_100405300 ENOG411E5G0 Q9XIA0 Q9XIA0_ARATH F13F21.24 protein (Hydroxyproline-rich glycoprotein family protein) 37856 F13F21.24 protein (Hydroxyproline-rich glycoprotein family protein) locus:2010217; AT1G49330 NA NA NA NA NA NA NA NA ENOG411E5G7 Q9LTD9 Y5278_ARATH Uncharacterized protein PAM68-like DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20923938}. MISCELLANEOUS: Has no redundant functions with PAM68. 18749 Uncharacterized protein PAM68-like chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2149644; AT5G52780 Protein of unknown function (DUF3464) Expressed protein (Os10g0533100 protein) Q8LN37 Q8LN37_ORYSJ Os10g0533100 LOC_Os10g38910 Os10g0533100 OsJ_32262 OSJNBa0053C23.22 OSNPB_100533100 ENOG411E5G4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: dynein axonemal assembly factor 1 NA NA NA NA NA NA NA ENOG411E5G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: SAM domain (Sterile alpha motif) Os08g0526500 protein (cDNA clone:J033042D10, full insert sequence) Q7F1E2 Q7F1E2_ORYSJ OJ1191_A10.133 Os08g0526500 OJ1014_E06.7 OsJ_28013 OSNPB_080526500 ENOG411E5GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411E5GA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E5GE BZIP25 Q9M1G6 BZP25_ARATH Basic leucine zipper 25 (AtbZIP25) (bZIP protein 25) (Basic leucine zipper OPAQUE 2 homolog 4) (Basic leucine zipper O2 homolog 4) FUNCTION: Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. 44331 Basic leucine zipper 25 (AtbZIP25) (bZIP protein 25) (Basic leucine zipper OPAQUE 2 homolog 4) (Basic leucine zipper O2 homolog 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; nutrient reservoir activity [GO:0045735]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of seed maturation [GO:2000693]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. TISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. locus:505006398; AT3G54620 Basic leucine-zipper C terminal NA NA NA NA NA NA NA ENOG411E5GD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dynein light chain NA NA NA NA NA NA NA ENOG411E5GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os11g0117600 protein,Os12g0116800 protein,Os11g0117550 protein,Os12g0116750 protein A0A0P0XYH5,A0A0P0Y6C0,A0A0P0XYQ7,A0A0P0Y6A5 A0A0P0XYH5_ORYSJ,A0A0P0Y6C0_ORYSJ,A0A0P0XYQ7_ORYSJ,A0A0P0Y6A5_ORYSJ Os11g0117600 OSNPB_110117600,Os12g0116800 OSNPB_120116800,Os11g0117550 OSNPB_110117550,Os12g0116750 OSNPB_120116750 ENOG411E5GJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os05g0164200 protein C7J214 C7J214_ORYSJ Os05g0164200 Os05g0164200 OSNPB_050164200 ENOG411E5GH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0459200 protein (cDNA clone:002-170-E12, full insert sequence) Q67J23 Q67J23_ORYSJ Os09g0459200 Os09g0459200 B1045B05.30 OSJNBa0054F02.8 OSNPB_090459200 ENOG411E5GN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (NAC) domain-containing protein Os09g0509100 protein (cDNA clone:001-019-D01, full insert sequence) Q0J0H5 Q0J0H5_ORYSJ Os09g0509100 Os09g0509100 OsJ_29961 OSNPB_090509100 ENOG411E5GS IBL1 Q9M0B9 IBL1_ARATH Transcription factor IBH1-like 1 (AtIBL1) (BHLH transcription factor eta) (bHLH eta) (Basic helix-loop-helix protein 159) (AtbHLH159) (bHLH 159) (bHLH transcription factor bHLH159) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:24505057}. FUNCTION: Functions redundandly with IBH1/BHLH158 in a regulation node known as the incoherent feed-forward loop (FFL). Acts as transcriptional repressor that negatively regulates cell and organ elongation in response to gibberellin (GA) and brassinosteroid (BR) signaling. {ECO:0000269|PubMed:24505057}. MISCELLANEOUS: Plants over-expressing IBL1 are dwarf with round-shaped, dark-green leaves and short petioles. {ECO:0000269|PubMed:24505057}. 20435 Transcription factor IBH1-like 1 (AtIBL1) (BHLH transcription factor eta) (bHLH eta) (Basic helix-loop-helix protein 159) (AtbHLH159) (bHLH 159) (bHLH transcription factor bHLH159) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of growth [GO:0040008]; transcription, DNA-templated [GO:0006351] locus:2118676; AT4G30410 NA NA NA NA NA NA NA NA ENOG411E5GR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxygen evolving enhancer protein 3 (PsbQ) Os02g0631100 protein (cDNA clone:001-101-E03, full insert sequence) Q6H474 Q6H474_ORYSJ Os02g0631100 B1250G12.8 OsJ_07615 OSNPB_020631100 ENOG411E5GQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: amidinotransferase NA NA NA NA NA NA NA ENOG411E5GP MTACP2 O80800,Q9FG58 ACPM2_ARATH,Q9FG58_ARATH Acyl carrier protein 2, mitochondrial (MtACP-2) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit),Acyl carrier protein FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity). May be involved in the synthesis of short and medium chain fatty acids. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain (By similarity). {ECO:0000250}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. R-ATH-389661;R-ATH-77289; 14167,8696 Acyl carrier protein 2, mitochondrial (MtACP-2) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit),Acyl carrier protein cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; cobalt ion binding [GO:0050897]; metal ion binding [GO:0046872]; phosphopantetheine binding [GO:0031177]; lipid A biosynthetic process [GO:0009245]; oxidation-reduction process [GO:0055114],cytosol [GO:0005829]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; lipid A biosynthetic process [GO:0009245] locus:2206300;,locus:2183627; AT1G65290,AT5G36280 Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein A0A0P0WLW0 A0A0P0WLW0_ORYSJ Os05g0377000 OSNPB_050377000 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E5GW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0108300 protein (Putative pherophorin-dz1 protein) (cDNA clone:001-118-B05, full insert sequence) Q6ZD62 Q6ZD62_ORYSJ Os08g0108300 OSNPB_080108300 P0450B04.32 ENOG411E5GT Q9LIM3 Q9LIM3_ARATH Serine/arginine repetitive matrix protein (Uncharacterized protein At3g15110/F4B12_2) (Uncharacterized protein At3g15115) 38766 Serine/arginine repetitive matrix protein (Uncharacterized protein At3g15110/F4B12_2) (Uncharacterized protein At3g15115) locus:505006348; AT3G15115 NA NA NA NA NA NA NA NA ENOG411E5GY PCR12 Q9SX26 PCR12_ARATH Protein PLANT CADMIUM RESISTANCE 12 (AtPCR12) FUNCTION: May be involved in heavy metals transport. {ECO:0000250}. 18037 Protein PLANT CADMIUM RESISTANCE 12 (AtPCR12) integral component of membrane [GO:0016021] locus:2026905; AT1G68630 Protein PLANT CADMIUM RESISTANCE NA NA NA NA NA NA NA ENOG411EK85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP Os03g0383800 protein (SAP domain containing protein, expressed),Os03g0383800 protein (Fragment) Q10KI0,A0A0P0VY62 Q10KI0_ORYSJ,A0A0P0VY62_ORYSJ Os03g0383800 LOC_Os03g26630 OSNPB_030383800,Os03g0383800 OSNPB_030383800 ENOG411EBFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBFV Q9FK54,Q9M0Q9 FB260_ARATH,FB223_ARATH F-box protein At5g18160,Putative F-box protein At4g09190 43697,44234 F-box protein At5g18160,Putative F-box protein At4g09190 locus:2172304;,locus:2141548; AT5G18160,AT4G09190 F-box associated domain NA NA NA NA NA NA NA ENOG411EBFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thi4 family NA NA NA NA NA NA NA ENOG411EBFT Q9LF34 Q9LF34_ARATH C2H2-type zinc finger family protein (Uncharacterized protein T20K14_90) (Zinc finger (C2H2 type) family protein) 46216 C2H2-type zinc finger family protein (Uncharacterized protein T20K14_90) (Zinc finger (C2H2 type) family protein) nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2180847; AT5G15480 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EBFS Q940Q1 PLY1_ARATH Probable pectate lyase 1 (EC 4.2.2.2) (Pectate lyase A1) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. ARA:AT1G04680-MONOMER; 4.2.2.2 47771 Probable pectate lyase 1 (EC 4.2.2.2) (Pectate lyase A1) membrane [GO:0016020]; metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed in flowers, but not in leaves. {ECO:0000269|PubMed:9278171}. locus:2197808; AT1G04680 Pectate lyase Os04g0137100 protein A0A0P0W6X3 A0A0P0W6X3_ORYSJ Os04g0137100 OSNPB_040137100 ENOG411EBFR LAS1 Q1G1A4,A0A1I9LTE4 LAS1_ARATH,A0A1I9LTE4_ARATH Lanosterol synthase (EC 5.4.99.7),Terpene cyclase/mutase family member (EC 5.4.99.-) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16531458}. Low sterol levels-T. Muranaka-2009 FUNCTION: Converts oxidosqualene to lanosterol. {ECO:0000269|PubMed:16445886, ECO:0000269|PubMed:16531458}. ARA:AT3G45130-MONOMER; R-ATH-191273; 5.4.99.7; 5.4.99.7,5.4.99.- 86518,87577 Lanosterol synthase (EC 5.4.99.7),Terpene cyclase/mutase family member (EC 5.4.99.-) lanosterol synthase activity [GO:0000250],intramolecular transferase activity [GO:0016866] TISSUE SPECIFICITY: Expressed in roots, stems and siliques. Low expression in rosette leaves. {ECO:0000269|PubMed:16531458}. locus:2096905; AT3G45130 Prenyltransferase and squalene oxidase repeat NA NA NA NA NA NA NA ENOG411EBFQ CRK37 Q9XEC7,A0A1P8B4N1 CRK37_ARATH,A0A1P8B4N1_ARATH Cysteine-rich receptor-like protein kinase 37 (Cysteine-rich RLK37) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 37 2.7.11.- 73440,57935 Cysteine-rich receptor-like protein kinase 37 (Cysteine-rich RLK37) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 37 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2137144; AT4G04500 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EBFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 714C1 (EC 1.14.-.-),Cytochrome P450 714C3 (EC 1.14.-.-),Os12g0118900 protein (Fragment) B9GBJ9,B9G934,A0A0P0Y6C9 C14C1_ORYSJ,C14C3_ORYSJ,A0A0P0Y6C9_ORYSJ CYP714C1 Os12g0118900 LOC_Os12g02630 OsJ_35024,CYP714C3 Os11g0119311 OsJ_32746,Os12g0118900 OSNPB_120118900 FUNCTION: Probably not involved in gibberellin metabolism since over-expression of CYP714C1 in a heterologous system does not induce semi-dwarfism. {ECO:0000269|PubMed:23319637}. ENOG411EBFZ NAC054 Q9FRV4 NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 (NAC domain-containing protein 1) (NAC domain-containing protein 54) (ANAC054) (NAC domain-containing protein CUC1) High frequency production of cup-shaped cotyledons in seedlings most form a primary shoot.,Production of the first pair of leaf primordia is significantly delayed compared to the wild type. This likely reflects a defect in embryonic shoot meristem initiation.,Strongly enhanced cotyledon fusion phenotype of cuc1-1. Low penetrance of heart-shaped cotyledons-M. Tasaka -1997 FUNCTION: Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:12787253, ECO:0000269|PubMed:14617069, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. MISCELLANEOUS: Overexpressing transgenic plants exhibit adventitious shoot apical meristems. 34233 Protein CUP-SHAPED COTYLEDON 1 (NAC domain-containing protein 1) (NAC domain-containing protein 54) (ANAC054) (NAC domain-containing protein CUC1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; formation of plant organ boundary [GO:0090691]; lateral root development [GO:0048527]; meristem initiation [GO:0010014]; negative regulation of cell division [GO:0051782]; primary shoot apical meristem specification [GO:0010072]; secondary shoot formation [GO:0010223]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed in young embryonic SAM. Later confined to the boundaries between cotyledon primordia and the SAM. In mature embryos, localized around first leaves primordia. Only weakly present in vegetative SAM. In inflorescence, observed at the boundaries between floral organ primordia. In callus, expressed during transition to shoot development, with a progressive restriction to specific areas corresponding to future shoot apex. {ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12492830}. TISSUE SPECIFICITY: Expressed in inflorescence stems, rosette leaves, aerial parts of seedlings, flowers, floral buds and roots. {ECO:0000269|PubMed:11245578}. locus:2083656; AT3G15170 cup-shaped cotyledon1 NA NA NA NA NA NA NA ENOG411EBFY dl4011w Q681F1,Q9LUR3,O23443,A8MQJ9 Q681F1_ARATH,Q9LUR3_ARATH,O23443_ARATH,A8MQJ9_ARATH Fumarylacetoacetate (FAA) hydrolase family (Putative decarboxilase),Fumarylacetoacetate (FAA) hydrolase family (Isomerase-like protein) (Putative decarboxilase),Fumarylacetoacetate (FAA) hydrolase family (Isomerase like protein),Fumarylacetoacetate (FAA) hydrolase family FUNCTION: Probable acylpyruvase. Binds copper in vitro. {ECO:0000269|PubMed:20018591}. ARA:AT3G16700-MONOMER;,ARA:AT4G15940-MONOMER; 14377,24417,24154,18549 Fumarylacetoacetate (FAA) hydrolase family (Putative decarboxilase),Fumarylacetoacetate (FAA) hydrolase family (Isomerase-like protein) (Putative decarboxilase),Fumarylacetoacetate (FAA) hydrolase family (Isomerase like protein),Fumarylacetoacetate (FAA) hydrolase family hydrolase activity [GO:0016787]; metabolic process [GO:0008152],copper ion binding [GO:0005507]; hydrolase activity [GO:0016787]; isomerase activity [GO:0016853]; metabolic process [GO:0008152],mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; hydrolase activity [GO:0016787]; isomerase activity [GO:0016853]; metabolic process [GO:0008152] locus:2089373;,locus:2129815; AT3G16700,AT4G15940 fumarylacetoacetate hydrolase NA NA NA NA NA NA NA ENOG411EBFX MYB49 Q9SPG6 Q9SPG6_ARATH Myb domain protein 49 (Myb-related transcription factor-like protein) (Putative transcription factor) 35737 Myb domain protein 49 (Myb-related transcription factor-like protein) (Putative transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651] locus:2162585; AT5G54230 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EBFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent Clp protease proteolytic subunit NA NA NA NA NA NA NA ENOG411EBFF Q570L2,F4I048 Q570L2_ARATH,F4I048_ARATH NagB/RpiA/CoA transferase-like superfamily protein (Putative translation initiation factor eIF-2B delta subunit),NagB/RpiA/CoA transferase-like superfamily protein R-ATH-72731; 68518,72965 NagB/RpiA/CoA transferase-like superfamily protein (Putative translation initiation factor eIF-2B delta subunit),NagB/RpiA/CoA transferase-like superfamily protein transferase activity [GO:0016740]; translation initiation factor activity [GO:0003743],cytoplasm [GO:0005737]; transferase activity [GO:0016740]; cellular metabolic process [GO:0044237] locus:2028501; AT1G48970 Initiation factor 2 subunit family NA NA NA NA NA NA NA ENOG411EBFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: glycoside hydrolase family 5 protein NA NA NA NA NA NA NA ENOG411EBFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Involved in proper cytoplasmic distribution of mitochondria (By similarity) Os07g0422000 protein (Fragment) A0A0P0X5L8 A0A0P0X5L8_ORYSJ Os07g0422000 OSNPB_070422000 ENOG411EBFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Glycoside hydrolase Family 5 NA NA NA NA NA NA NA ENOG411EBFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EBFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1785) NA NA NA NA NA NA NA ENOG411EBFN BGLU16,BGLU15 Q9M1D0,A0A1P8B2D5,F4JAM3,A8MSC6 BGL16_ARATH,A0A1P8B2D5_ARATH,F4JAM3_ARATH,A8MSC6_ARATH Beta-glucosidase 16 (AtBGLU16) (EC 3.2.1.21) (Protein YELLOW-LEAF-SPECIFIC GENE 1),Beta glucosidase 15,Beta glucosidase 16 ARA:AT3G60130-MONOMER; R-ATH-189085; 3.2.1.21 58043,40203,52332,51087 Beta-glucosidase 16 (AtBGLU16) (EC 3.2.1.21) (Protein YELLOW-LEAF-SPECIFIC GENE 1),Beta glucosidase 15,Beta glucosidase 16 beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; response to hormone [GO:0009725]; response to salt stress [GO:0009651],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571}. TISSUE SPECIFICITY: Expressed at low levels in cauline leaves and flowers. {ECO:0000269|PubMed:11230571}. locus:2101417; AT3G60130 beta glucosidase 16 NA NA NA NA NA NA NA ENOG411EBFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBFK DREB2E O80917 DRE2E_ARATH Dehydration-responsive element-binding protein 2E (Protein DREB2E) (Dehydration response element-binding protein 19) FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}. 27370 Dehydration-responsive element-binding protein 2E (Protein DREB2E) (Dehydration response element-binding protein 19) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to heat [GO:0034605]; positive regulation of transcription, DNA-templated [GO:0045893]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in xylem tissues, stigma, anthers and region where sepals and petals attach the peduncle. {ECO:0000269|PubMed:21069430}. locus:2057217; AT2G38340 AP2 NA NA NA NA NA NA NA ENOG411EBFJ BOR6 Q3E954 BOR6_ARATH Probable boron transporter 6 FUNCTION: Probable boron transporter. Boron is essential for maintaining the integrity of plants cell walls (By similarity). {ECO:0000250}. R-ATH-1237044;R-ATH-1247673;R-ATH-425381; 75552 Probable boron transporter 6 integral component of plasma membrane [GO:0005887]; anion transmembrane transporter activity [GO:0008509]; anion:anion antiporter activity [GO:0015301]; inorganic anion exchanger activity [GO:0005452]; anion transmembrane transport [GO:0098656]; regulation of intracellular pH [GO:0051453] locus:2145517; AT5G25430 HCO3- transporter family NA NA NA NA NA NA NA ENOG411EBFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EBFH RAP2-10 Q9SW63 RA210_ARATH Ethylene-responsive transcription factor RAP2-10 (Protein RELATED TO APETALA2 10) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 21362 Ethylene-responsive transcription factor RAP2-10 (Protein RELATED TO APETALA2 10) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2115005; AT4G36900 related to AP2 10 NA NA NA NA NA NA NA ENOG411EBF7 Q9LF06 Q9LF06_ARATH Octicosapeptide/Phox/Bem1p family protein (Uncharacterized protein At5g16220) (Uncharacterized protein At5g16220; T21H19_140) (Uncharacterized protein T21H19_140) 52310 Octicosapeptide/Phox/Bem1p family protein (Uncharacterized protein At5g16220) (Uncharacterized protein At5g16220; T21H19_140) (Uncharacterized protein T21H19_140) locus:2181417; AT5G16220 Octicosapeptide Phox Bem1p NA NA NA NA NA NA NA ENOG411EBF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region NA NA NA NA NA NA NA ENOG411EBF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411EBF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Squalene/phytoene synthase NA NA NA NA NA NA NA ENOG411EBF3 PIX7 Q9LFP7,Q9SRH7 PIX7_ARATH,Y3130_ARATH Probable serine/threonine-protein kinase PIX7 (EC 2.7.11.1),Receptor-like serine/threonine-protein kinase At3g01300 (EC 2.7.11.1) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 54799,54510 Probable serine/threonine-protein kinase PIX7 (EC 2.7.11.1),Receptor-like serine/threonine-protein kinase At3g01300 (EC 2.7.11.1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2147805;,locus:2100282; AT5G15080,AT3G01300 STYKc NA NA NA NA NA NA NA ENOG411EBF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBF0 IGMT1,IGMT4,IGMT2,IGMT3 Q9LPU5,Q9LPU8,Q9LPU7,Q9LPU6,A0A1P8AP65 IGMT1_ARATH,IGMT4_ARATH,IGMT2_ARATH,IGMT3_ARATH,A0A1P8AP65_ARATH Indole glucosinolate O-methyltransferase 1 (EC 2.1.1.-),Indole glucosinolate O-methyltransferase 4 (EC 2.1.1.-),Indole glucosinolate O-methyltransferase 2 (EC 2.1.1.-),Indole glucosinolate O-methyltransferase 3 (EC 2.1.1.-),O-methyltransferase family protein FUNCTION: Involved in indole glucosinolate biosynthesis. Catalyzes methoxylation reactions of the glucosinolate indole ring. Converts the hydroxy intermediates 4-hydroxy-indol-3-yl-methylglucosinolate (4OH-I3M) and 1-hydroxy-indol-3-yl-methylglucosinolate (1OH-I3M) to 4-methoxy-indol-3-yl-methylglucosinolate (4MO-I3M) and 1-methoxy-indol-3-yl-methylglucosinolate (1MO-I3M), respectively. {ECO:0000269|PubMed:21317374}.,FUNCTION: Involved in indole glucosinolate biosynthesis. Catalyzes methoxylation reactions of the glucosinolate indole ring. Converts the hydroxy intermediates 4-hydroxy-indol-3-yl-methylglucosinolate (4OH-I3M) and 1-hydroxy-indol-3-yl-methylglucosinolate (1OH-I3M) to 4-methoxy-indol-3-yl-methylglucosinolate (4MO-I3M) and 1-methoxy-indol-3-yl-methylglucosinolate(1MO-I3M), respectively. {ECO:0000250|UniProtKB:Q9LPU5}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:AT1G21100-MONOMER;,ARA:AT1G21130-MONOMER;,ARA:AT1G21120-MONOMER;,ARA:AT1G21110-MONOMER; R-ATH-209931; 2.1.1.- 40869,40748,40912,40935,46772 Indole glucosinolate O-methyltransferase 1 (EC 2.1.1.-),Indole glucosinolate O-methyltransferase 4 (EC 2.1.1.-),Indole glucosinolate O-methyltransferase 2 (EC 2.1.1.-),Indole glucosinolate O-methyltransferase 3 (EC 2.1.1.-),O-methyltransferase family protein methyltransferase activity [GO:0008168]; O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438]; indole glucosinolate metabolic process [GO:0042343],O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438],O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983] locus:2199607;,locus:2199582;,locus:2199587;,locus:2199597; AT1G21100,AT1G21130,AT1G21120,AT1G21110 indole glucosinolate O-methyltransferase NA NA NA NA NA NA NA ENOG411EBF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-box zinc finger NA NA NA NA NA NA NA ENOG411EBF8 A0A1P8B5P1,F4KHN5,F4JKF8,A0A1P8B5P0 A0A1P8B5P1_ARATH,F4KHN5_ARATH,F4JKF8_ARATH,A0A1P8B5P0_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein 89317,93008,92417,92653 P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787],nucleus [GO:0005634]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:4010714050;,locus:2132922; AT5G52882,AT4G28000 ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411E89A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyl-CpG binding domain NA NA NA NA NA NA NA ENOG411E89B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os01g0957401 protein A0A0P0VD24 A0A0P0VD24_ORYSJ Os01g0957401 OSNPB_010957401 ENOG411E89C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411E89D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: methyltransferase type 11 NA NA NA NA NA NA NA ENOG411E89E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E89F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0692050 protein A0A0P0X0L5 A0A0P0X0L5_ORYSJ Os06g0692050 OSNPB_060692050 ENOG411E89G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA helicase NA NA NA NA NA NA NA ENOG411E89H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif Calmodulin-binding protein-like (Os02g0299200 protein) Q6K4R6 Q6K4R6_ORYSJ Os02g0299200 OSJNBa0030M21.14 OSNPB_020299200 ENOG411E89I Q0WLX9 Q0WLX9_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 35202 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family locus:1006230172; AT2G30505 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E89J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E89K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0173000 protein) (cDNA clone:002-180-F12, full insert sequence) Q8S5H8 Q8S5H8_ORYSJ OSJNBa0061H20.11 LOC_Os10g09240 Os10g0173000 OsJ_30858 OSNPB_100173000 ENOG411E89M Q9SY08,A0A1P8B3F2,F4JHV7 Q9SY08_ARATH,A0A1P8B3F2_ARATH,F4JHV7_ARATH Uncharacterized protein AT4g02830 (Uncharacterized protein T5J8.15),Uncharacterized protein 21039,19036,20798 Uncharacterized protein AT4g02830 (Uncharacterized protein T5J8.15),Uncharacterized protein locus:2140230; AT4G02830 NA NA NA NA NA NA NA NA ENOG411E89P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E89Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0696150 protein Q851D6 Q851D6_ORYSJ Os03g0696150 LOC_Os03g48960 OsJ_12211 OSJNBb0021P10.6 OSNPB_030696150 ENOG411E89S AGP16,AGP20 O82337,Q9M373,Q3EBF3 AGP16_ARATH,AGP20_ARATH,Q3EBF3_ARATH Arabinogalactan peptide 16 (AG-peptide 16),Arabinogalactan peptide 20 (AG-peptide 20),Arabinogalactan protein 16 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. {ECO:0000305}.,FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 7602,7699,6062 Arabinogalactan peptide 16 (AG-peptide 16),Arabinogalactan peptide 20 (AG-peptide 20),Arabinogalactan protein 16 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Predominantly expressed in flowers. {ECO:0000269|PubMed:11006345}. locus:2039079;,locus:2076730; AT2G46330,AT3G61640 Arabinogalactan peptide Os05g0217000 protein (cDNA clone:001-104-C09, full insert sequence),Os06g0505700 protein (Fragment) Q6I5W4,A0A0P0WX73 Q6I5W4_ORYSJ,A0A0P0WX73_ORYSJ Os05g0217000 Os05g0217000 OJ1076_H08.11 OsJ_17566 OSNPB_050217000,Os06g0505700 OSNPB_060505700 ENOG411E89U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3681) NA NA NA NA NA NA NA ENOG411E89V Q9ZQP5,A0A1P8B334 Q9ZQP5_ARATH,A0A1P8B334_ARATH At2g35730 (Expressed protein) (Heavy metal transport/detoxification superfamily protein),Heavy metal transport/detoxification superfamily protein 13183,12048 At2g35730 (Expressed protein) (Heavy metal transport/detoxification superfamily protein),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2058689; AT2G35730 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E89X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E89Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance response protein NA NA NA NA NA NA NA ENOG411E89Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-adenosyl-l-methionine decarboxylase leader peptide NA NA NA NA NA NA NA ENOG411E892 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0678800 protein (cDNA clone:001-107-H04, full insert sequence) Q8S181 Q8S181_ORYSJ Os01g0678800 B1144G04.30 OsJ_03007 OSNPB_010678800 ENOG411E895 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E896 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E898 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E899 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative RNA methylase family UPF0020 NA NA NA NA NA NA NA ENOG411EGM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beta-catenin-interacting protein ICAT NA NA NA NA NA NA NA ENOG411EGM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGM7 Q9LID7,B3H518 Q9LID7_ARATH,B3H518_ARATH Uncharacterized protein 21581,18924 Uncharacterized protein locus:2091516; AT3G13630 NA NA NA NA NA NA NA NA ENOG411EGM6 HIPP10,HIPP11 F4KHL6,Q9LTE4,Q9LTE8,Q9LTF0,A0A1P8BAZ1 HIP10_ARATH,HIP11_ARATH,Q9LTE8_ARATH,Q9LTF0_ARATH,A0A1P8BAZ1_ARATH Heavy metal-associated isoprenylated plant protein 10 (AtHIP10),Heavy metal-associated isoprenylated plant protein 11 (AtHIP11),Copper transport protein family,Copper transport protein family (Emb|CAA71173.1) FUNCTION: Probable heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 12579,21487,20613,11931,15404 Heavy metal-associated isoprenylated plant protein 10 (AtHIP10),Heavy metal-associated isoprenylated plant protein 11 (AtHIP11),Copper transport protein family,Copper transport protein family (Emb|CAA71173.1) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2149674;,locus:2149679;,locus:2149639;,locus:2149609; AT5G52720,AT5G52730,AT5G52690,AT5G52670 NA NA NA NA NA NA NA NA ENOG411EGM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TNP1/EN/SPM transposase NA NA NA NA NA NA NA ENOG411EGM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGMC MUA2.15,MUA2.23 Q1G3G4,Q9FKL7,Q9FKK9 Q1G3G4_ARATH,Q9FKL7_ARATH,Q9FKK9_ARATH GCK domain protein,GCK domain-containing protein (Gb|AAD39291.1),GCK domain-containing protein (Gb|AAD39291.1|AC007576_14) 6785,15015,24919 GCK domain protein,GCK domain-containing protein (Gb|AAD39291.1),GCK domain-containing protein (Gb|AAD39291.1|AC007576_14) locus:2174512;,locus:2174492; AT5G57570,AT5G57640 GCK domain NA NA NA NA NA NA NA ENOG411EGMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGMG SAP8 Q3EA33 SAP8_ARATH Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 (AtSAP8) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 13694 Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 (AtSAP8) DNA binding [GO:0003677]; zinc ion binding [GO:0008270] locus:504955427; AT4G14225 A20-like zinc finger NA NA NA NA NA NA NA ENOG411EGMK T2J13.30 B3H5R5,Q58FX2,Q9SMU9,Q5XV45,A0A1P8BFH4 B3H5R5_ARATH,Q58FX2_ARATH,Q9SMU9_ARATH,Q5XV45_ARATH,A0A1P8BFH4_ARATH Splicing factor 3A subunit,At2g43960 (SWAP (Suppressor-of-White-APricot)/surp domain-containing protein),SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (Uncharacterized protein T2J13.30),SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein 4482,50847,34862,20681,22159 Splicing factor 3A subunit,At2g43960 (SWAP (Suppressor-of-White-APricot)/surp domain-containing protein),SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (Uncharacterized protein T2J13.30),SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein catalytic step 2 spliceosome [GO:0071013]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; RNA binding [GO:0003723]; mRNA 3'-splice site recognition [GO:0000389]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381],RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:4515103452;,locus:2051864;,locus:2101333; AT4G25707,AT2G43960,AT3G49130,AT5G12280 Surp module NA NA NA NA NA NA NA ENOG411EGMJ SMR1 Q9LPP4 SMR1_ARATH Cyclin-dependent protein kinase inhibitor SMR1 (Protein LOSS OF GIANT CELLS FROM ORGANS) (Protein SIAMESE-RELATED 1) DISRUPTION PHENOTYPE: Increased number of smaller cells and loss of giant cells in sepals due to both a decrease in endoreduplication and an average decrease in the duration of the cell cycle. {ECO:0000269|PubMed:20485493}. FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle (PubMed:17098811, PubMed:26546445). Cooperates with SIM and SMR2 to promote endoreplication during leaf development (PubMed:26546445). Specifically regulates endoreduplication in epidermal pavement cells to produce the cell size pattern (PubMed:20485493). Is necessary for giant cell formation (PubMed:20485493). Positive regulator of effector-triggered immunity (ETI) (PubMed:25455564). {ECO:0000269|PubMed:20485493, ECO:0000269|PubMed:25455564, ECO:0000269|PubMed:26546445, ECO:0000305|PubMed:17098811}. MISCELLANEOUS: Over-expression of SMR1 produces additional giant cells on sepals. {ECO:0000305|PubMed:20485493}. 14614 Cyclin-dependent protein kinase inhibitor SMR1 (Protein LOSS OF GIANT CELLS FROM ORGANS) (Protein SIAMESE-RELATED 1) nucleus [GO:0005634]; protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049]; defense response to bacterium [GO:0042742]; positive regulation of DNA endoreduplication [GO:0032877]; sepal giant cell development [GO:0090393] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers (PubMed:17098811). Expressed in the root elongation zone (PubMed:24399300). {ECO:0000269|PubMed:17098811, ECO:0000269|PubMed:24399300}. locus:505006334; AT3G10525 Inherit from euNOG: cyclin-dependent protein kinase inhibitor NA NA NA NA NA NA NA ENOG411EGMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: cop9 signalosome complex subunit NA NA NA NA NA NA NA ENOG411EGMM T17F15.110 Q9SU65 Q9SU65_ARATH At3g48020 (Uncharacterized protein At3g48020) (Uncharacterized protein T17F15.110) 15642 At3g48020 (Uncharacterized protein At3g48020) (Uncharacterized protein T17F15.110) locus:2097875; AT3G48020 NA NA NA NA NA NA NA NA ENOG411EGMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os02g0546600 protein (Fragment) Q0E0J3 Q0E0J3_ORYSJ Os02g0546600 Os02g0546600 OSNPB_020546600 ENOG411EGMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411EGMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411EGMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGMV O22691 O22691_ARATH At1g04330 (F19P19.24 protein) 11301 At1g04330 (F19P19.24 protein) locus:2018249; AT1G04330 NA NA NA NA NA NA NA NA ENOG411EGMU Q8S8H4 Q8S8H4_ARATH Expressed protein (Transmembrane protein) (Uncharacterized protein At2g21185) 10253 Expressed protein (Transmembrane protein) (Uncharacterized protein At2g21185) integral component of membrane [GO:0016021] locus:505006262; AT2G21185 NA NA NA NA NA NA NA NA ENOG411EGMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RbcX protein NA NA NA NA NA NA NA ENOG411EGMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nucleolar protein NA NA NA NA NA NA NA ENOG411EGMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40S ribosomal protein S27 NA NA NA NA NA NA NA ENOG411EE55 CYP705A22,CYP705A12,CYP705A33,CYP705A18,CYP705A6,dl3725w Q9LJY5,Q9FH67,Q9LIG7,Q9LJY9,Q9SJ39,Q8GYY9,O23389,A8MQL2,F4JDH8 C05AK_ARATH,Q9FH67_ARATH,Q9LIG7_ARATH,Q9LJY9_ARATH,Q9SJ39_ARATH,Q8GYY9_ARATH,O23389_ARATH,A8MQL2_ARATH,F4JDH8_ARATH Cytochrome P450 705A22 (EC 1.14.-.-) (Protein GRAVITY PERSISTENCE SIGNAL 1),Cytochrome P450 (Cytochrome P450, family 705, subfamily A, polypeptide 12),Cytochrome P450, family 705, subfamily A, polypeptide 33 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 18 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 6 (Putative cytochrome P450),At3g20960 (Cytochrome P450, family 705, subfamily A, polypeptide 33) (Putative cytochrome P450),Cytochrome P450 like protein (Cytochrome P450, family 705, subfamily A, polypeptide 3),Cytochrome P450, family 705, subfamily A, polypeptide 22,Cytochrome P450, family 705, subfamily A, polypeptide 18 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit loss of tropic response to gravity when reoriented relative to the gravity vector in the cold. {ECO:0000269|PubMed:23284057}. FUNCTION: Plays a role in the gravitropic response of the inflorescence stems and roots. May affect the synthesis of flavonols that have a role in regulating auxin transport. {ECO:0000269|PubMed:23284057}. ARA:AT3G20130-MONOMER;,ARA:AT5G42580-MONOMER;,ARA:AT3G20960-MONOMER;,ARA:AT3G20090-MONOMER;,ARA:AT2G05180-MONOMER;,ARA:AT4G15360-MONOMER; 1.14.-.- 58709,56882,59219,59971,50248,47675,60299,55512,44574 Cytochrome P450 705A22 (EC 1.14.-.-) (Protein GRAVITY PERSISTENCE SIGNAL 1),Cytochrome P450 (Cytochrome P450, family 705, subfamily A, polypeptide 12),Cytochrome P450, family 705, subfamily A, polypeptide 33 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 18 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 6 (Putative cytochrome P450),At3g20960 (Cytochrome P450, family 705, subfamily A, polypeptide 33) (Putative cytochrome P450),Cytochrome P450 like protein (Cytochrome P450, family 705, subfamily A, polypeptide 3),Cytochrome P450, family 705, subfamily A, polypeptide 22,Cytochrome P450, family 705, subfamily A, polypeptide 18 endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; gravitropism [GO:0009630]; positive gravitropism [GO:0009958]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2087615;,locus:2152696;,locus:2051269;,locus:2088771;,locus:2130025;,locus:2087555; AT3G20130,AT5G42580,AT2G05180,AT3G20960,AT4G15360,AT3G20090 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EE54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE57 Q9LFW0,Q9FZD6,Q9T0C7,Q9LFV9,Q9FYJ1,Q9FZD5 FB257_ARATH,FB306_ARATH,FB231_ARATH,FB258_ARATH,FB24_ARATH,FB307_ARATH Putative F-box protein At5g15660,Putative F-box protein At1g26515,F-box protein At4g11590,Putative F-box protein At5g15670,Putative F-box protein At1g31000,Putative F-box protein At1g26510 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 50912,42250,45947,24100,42522,45719 Putative F-box protein At5g15660,Putative F-box protein At1g26515,F-box protein At4g11590,Putative F-box protein At5g15670,Putative F-box protein At1g31000,Putative F-box protein At1g26510 nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:2143186;,locus:6530298150;,locus:2139702;,locus:2143201;,locus:2197910; AT5G15660,AT1G26515,AT4G11590,AT5G15670,AT1G31000,AT1G26510 F-box associated domain NA NA NA NA NA NA NA ENOG411EE56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF-like domain NA NA NA NA NA NA NA ENOG411EE51 ARR15,ARR7 Q7G8V2,Q9ZWS7 ARR15_ARATH,ARR7_ARATH Two-component response regulator ARR15,Two-component response regulator ARR7 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:12354925, ECO:0000269|PubMed:12941880, ECO:0000269|PubMed:14973166}.,FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:14973166, ECO:0000269|PubMed:9482949}. 22401,22800 Two-component response regulator ARR15,Two-component response regulator ARR7 cytoplasm [GO:0005737]; nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; cytokinin-activated signaling pathway [GO:0009736]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; cytokinin-activated signaling pathway [GO:0009736]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; response to cytokinin [GO:0009735]; stem cell population maintenance [GO:0019827]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in roots and young flowers. {ECO:0000269|PubMed:11115887, ECO:0000269|PubMed:9482949}. locus:2027237;,locus:2011286; AT1G74890,AT1G19050 REC NA NA NA NA NA NA NA ENOG411EE53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP P2X receptor NA NA NA NA NA NA NA ENOG411EE58 AZF2 Q9SSW2 AZF2_ARATH Zinc finger protein AZF2 (Zinc-finger protein 2) DISRUPTION PHENOTYPE: Delayed senescence and hypersensitivity to ABA during seed germination. {ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:22709441}. Germination sensitive to ABA-S. Hoth-2010 FUNCTION: Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}. MISCELLANEOUS: Plants overexpressing AZF2 have increased sensitivity to salt stress and barely survive under high salt conditons. {ECO:0000305|PubMed:21852415}. 29796 Zinc finger protein AZF2 (Zinc-finger protein 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; embryo development ending in seed dormancy [GO:0009793]; hyperosmotic salinity response [GO:0042538]; negative regulation of transcription, DNA-templated [GO:0045892]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, radicles, cotyledons, hypocotyls, leaf veins, stems, sepals, petals, stamens, placenta, funiculi and maturated seeds. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483}. locus:2091201; AT3G19580 DNA binding nucleic acid binding transcription factor transcription repressor zinc ion binding NA NA NA NA NA NA NA ENOG411EE5D PME49,PME50 Q9LY18,Q9LY17 PME49_ARATH,PME50_ARATH Probable pectinesterase 49 (PE 49) (EC 3.1.1.11) (Pectin methylesterase 49) (AtPME49),Probable pectinesterase 50 (PE 50) (EC 3.1.1.11) (Pectin methylesterase 50) (AtPME50) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G07420-MONOMER;,ARA:AT5G07430-MONOMER; 3.1.1.11; 3.1.1.11 39658,39911 Probable pectinesterase 49 (PE 49) (EC 3.1.1.11) (Pectin methylesterase 49) (AtPME49),Probable pectinesterase 50 (PE 50) (EC 3.1.1.11) (Pectin methylesterase 50) (AtPME50) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}. locus:2183349;,locus:2183364; AT5G07420,AT5G07430 Pectinesterase NA NA NA NA NA NA NA ENOG411EE5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin NA NA NA NA NA NA NA ENOG411EE5A LECRK19 Q9LSR8 LRK19_ARATH L-type lectin-domain containing receptor kinase I.9 (LecRK-I.9) (LecRK79) (EC 2.7.11.1) (Protein DOES NOT RESPOND TO NUCLEOTIDES 1) (Purinoreceptor kinase 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants (e.g. lecrk-I.9-1 and lecrk-I.9-2) are defective in extracellular ATP-induced calcium response and susceptible to an avirulent isolate of the oomycetes Phytophthora brassicae and Phytophthora capsici. Impaired increase of cytoplasmic calcium concentration in response to extracellular ATP (PubMed:25301072). {ECO:0000269|PubMed:21483488, ECO:0000269|PubMed:24436418, ECO:0000269|PubMed:25083911, ECO:0000269|PubMed:25301072}. FUNCTION: Essential receptor for extracellular ATP (PubMed:24436418, PubMed:25301072). Binds ATP with high affinity through its extracellular legume-lectin like region (PubMed:24436418). Is required for ATP-induced intracellular calcium response, mitogen-activated protein kinase 3 (MPK3) and MPK6 activation and ATP-induced gene expression (PubMed:24436418, PubMed:25301072). May play a variety of roles in stress resistance (PubMed:24436418). May be involved in protein-protein interactions with RGD motif-containing proteins as potential ligands (PubMed:21483488, PubMed:16361528). Plays probably a structural and signaling role at the plant cell surfaces (PubMed:24436418, PubMed:21483488). {ECO:0000269|PubMed:16361528, ECO:0000269|PubMed:21483488, ECO:0000269|PubMed:24436418, ECO:0000269|PubMed:25301072}.; FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:23980842, ECO:0000269|PubMed:25083911, ECO:0000269|PubMed:26795144}. MISCELLANEOUS: Plants over-expressing LECRK19 have more compact rosettes with smaller and slightly wrinkled leaves, reduced height, accumulate anthocyanin and lignin and show enhanced resistance to the oomycete Phytophthora brassicae (PubMed:21483488). Ectopic expression of LECRK19 increases plant response to physical wounding (PubMed:24436418). {ECO:0000305|PubMed:21483488, ECO:0000305|PubMed:24436418}. 2.7.11.1 85319 L-type lectin-domain containing receptor kinase I.9 (LecRK-I.9) (LecRK79) (EC 2.7.11.1) (Protein DOES NOT RESPOND TO NUCLEOTIDES 1) (Purinoreceptor kinase 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; cellular response to ATP [GO:0071318]; defense response to oomycetes [GO:0002229]; focal adhesion assembly [GO:0048041]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in leaf petioles. {ECO:0000269|PubMed:21483488}. locus:2144045; AT5G60300 lectin protein kinase family NA NA NA NA NA NA NA ENOG411EE5C GLL23,GLL22 Q8W4H8,Q1H583 GDL19_ARATH,GDL18_ARATH Inactive GDSL esterase/lipase-like protein 23 (GDSL-like lipase 23) (Probable myrosinase-associated protein GLL23),GDSL esterase/lipase 22 (EC 3.1.1.-) (Extracellular lipase At1g54000) (GDSL esterase/lipase At1g54000) FUNCTION: Involved in the control of the PYK10 complex size and possibly substrate specificity. May be exported from the endoplamic reticulum upon interaction with MVP1. {ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:24330158}. ARA:AT1G54010-MONOMER; 3.1.1.- 43143,43194 Inactive GDSL esterase/lipase-like protein 23 (GDSL-like lipase 23) (Probable myrosinase-associated protein GLL23),GDSL esterase/lipase 22 (EC 3.1.1.-) (Extracellular lipase At1g54000) (GDSL esterase/lipase At1g54000) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plant-type vacuole [GO:0000325]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] DEVELOPMENTAL STAGE: Expressed in 10-day-old seedlings. {ECO:0000269|PubMed:24330158}. TISSUE SPECIFICITY: Expressed mainly in roots. {ECO:0000269|PubMed:18467340}. locus:2014390;,locus:2014370; AT1G54010,AT1G54000 lipid catabolic process NA NA NA NA NA NA NA ENOG411EE5M BHLH125 Q9LQ08,A0A1P8ASF5 BH125_ARATH,A0A1P8ASF5_ARATH Transcription factor bHLH125 (Basic helix-loop-helix protein 125) (AtbHLH125) (bHLH 125) (Transcription factor EN 2) (bHLH transcription factor bHLH125),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 29215,27822 Transcription factor bHLH125 (Basic helix-loop-helix protein 125) (AtbHLH125) (bHLH 125) (Transcription factor EN 2) (bHLH transcription factor bHLH125),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:504956298; AT1G62975 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EE5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Patatin group Os12g0611300 protein,Os03g0416400 protein,Os06g0285300 protein A0A0P0YC13,A0A0P0VZF8,A0A0P0WVE4 A0A0P0YC13_ORYSJ,A0A0P0VZF8_ORYSJ,A0A0P0WVE4_ORYSJ Os12g0611300 OSNPB_120611300,Os03g0416400 OSNPB_030416400,Os06g0285300 OSNPB_060285300 ENOG411EE5J PAP7 Q8S341 PPA7_ARATH Purple acid phosphatase 7 (EC 3.1.3.2) ARA:AT2G01880-MONOMER; R-ATH-196843; 3.1.3.2 37549 Purple acid phosphatase 7 (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2059743; AT2G01880 Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411EE5U TTL4,TTL3 Q84JR9,Q9SIN1,A0A1I9LLR7 TTL4_ARATH,TTL3_ARATH,A0A1I9LLR7_ARATH TPR repeat-containing thioredoxin TTL4 (Tetratricopeptide repeat thioredoxin-like 4),Inactive TPR repeat-containing thioredoxin TTL3 (Tetratricopeptide repeat thioredoxin-like 3) (VH1-interacting TPR-containing protein),Tetratricopetide-repeat thioredoxin-like 4 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings display increased tolerance to salt stress at moderate NaCl concentrations (120 mM). {ECO:0000269|PubMed:22232384}.,DISRUPTION PHENOTYPE: Altered vein pattern in cotyledons and primary leaves. Mutant seedlings show increased sensitivity to osmotic and salt stresses in roots. {ECO:0000269|PubMed:19000166, ECO:0000269|PubMed:22232384}. Abnormal leaf venation. Reduced number of leaf veins. Abnormal vein patterning; Altered response to auxin and brassinosteroid-T. Nelson-2009 FUNCTION: Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. {ECO:0000269|PubMed:22232384}.,FUNCTION: Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptor protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation. {ECO:0000269|PubMed:19000166}. 74387,75461,71735 TPR repeat-containing thioredoxin TTL4 (Tetratricopeptide repeat thioredoxin-like 4),Inactive TPR repeat-containing thioredoxin TTL3 (Tetratricopeptide repeat thioredoxin-like 3) (VH1-interacting TPR-containing protein),Tetratricopetide-repeat thioredoxin-like 4 cell [GO:0005623]; cell redox homeostasis [GO:0045454]; response to osmotic stress [GO:0006970],cell [GO:0005623]; auxin-activated signaling pathway [GO:0009734]; brassinosteroid mediated signaling pathway [GO:0009742]; cell redox homeostasis [GO:0045454]; leaf vascular tissue pattern formation [GO:0010305]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:22232384}.,TISSUE SPECIFICITY: Expressed in embryos and organ primordia in shoot and root. In primary and cauline leaves and petals, is expressed in hydathodes, guard cells, petiole cells and cells associated with differentiating vascular bundles. {ECO:0000269|PubMed:19000166, ECO:0000269|PubMed:22232384}. locus:2076386;,locus:2041559; AT3G58620,AT2G42580 Thioredoxin NA NA NA NA NA NA NA ENOG411EE5T MBK23.23 Q56XC6,F4J4Y8,F4HPM6,F4JF59,A0A1I9LT81,A0A1I9LQX3 Q56XC6_ARATH,F4J4Y8_ARATH,F4HPM6_ARATH,F4JF59_ARATH,A0A1I9LT81_ARATH,A0A1I9LQX3_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At5g41695),RNA-binding (RRM/RBD/RNP motifs) family protein,Polynucleotide adenylyltransferase domain/RNA recognition motif protein 65291,48128,55825,22359,16172,46700 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At5g41695),RNA-binding (RRM/RBD/RNP motifs) family protein,Polynucleotide adenylyltransferase domain/RNA recognition motif protein RNA binding [GO:0003723],nucleotidyltransferase activity [GO:0016779]; RNA binding [GO:0003723] locus:2160437;,locus:504955582;,locus:2028205;,locus:2099488; AT5G41690,AT3G10845,AT1G45100,AT3G48840 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EE5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0722250 protein A0A0P0VNZ9 A0A0P0VNZ9_ORYSJ Os02g0722250 OSNPB_020722250 ENOG411EE5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0501000 protein) (cDNA clone:002-137-G12, full insert sequence) Q2R3V6 Q2R3V6_ORYSJ Os11g0501000 LOC_Os11g30620 Os11g0501000 OSNPB_110501000 ENOG411EE5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411EE5R LBD10 O64836 LBD10_ARATH LOB domain-containing protein 10 (ASYMMETRIC LEAVES 2-like protein 2) (AS2-like protein 2) 34780 LOB domain-containing protein 10 (ASYMMETRIC LEAVES 2-like protein 2) (AS2-like protein 2) locus:2046817; AT2G23660 LOB domain-containing protein 10 NA NA NA NA NA NA NA ENOG411DPP8 Q8H109 Q8H109_ARATH Uncharacterized protein At1g06240 42270 Uncharacterized protein At1g06240 locus:2038550; AT1G06240 Protein of unknown function (DUF455) Os01g0214400 protein A0A0P0V065 A0A0P0V065_ORYSJ Os01g0214400 OSNPB_010214400 ENOG411DPP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3675) Os05g0552400 protein Q6L4F7 Q6L4F7_ORYSJ P0560C03.19 Os05g0552400 OsJ_19468 OSJNBa0079H23.14 OSNPB_050552400 ENOG411DTY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rpp20 subunit of nuclear RNase MRP and P OSJNBa0042L16.6 protein (Os04g0428950 protein) Q7XUT4 Q7XUT4_ORYSJ OSJNBa0042L16.6 Os04g0428950 OsJ_14829 OSNPB_040428950 ENOG411DTY8 YUP8H12.1 Q9LUV9,F4I8Q8 Q9LUV9_ARATH,F4I8Q8_ARATH Sec14p-like phosphatidylinositol transfer family protein 45277,47498 Sec14p-like phosphatidylinositol transfer family protein locus:2087847;,locus:2201061; AT3G22410,AT1G05370 SEC14 cytosolic factor family protein CRAL/TRIO domain containing protein, expressed (Os03g0219100 protein) Q10PW5 Q10PW5_ORYSJ LOC_Os03g11950 Os03g0219100 OSNPB_030219100 ENOG411DTY3 PCMP-H52 Q9CAY1 PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial (Mitochondrial RNA editing factor 10) FUNCTION: Involved in C-to-U editing of mitochondrial RNA. Required specifically for editing the mitochondrial NAD2 transcript. {ECO:0000269|PubMed:23288601}. 69127 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial (Mitochondrial RNA editing factor 10) intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; cytidine to uridine editing [GO:0016554]; mRNA processing [GO:0006397] locus:2080727; AT3G11460 Pentatricopeptide repeat-containing protein Os01g0819800 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q8LQE8 Q8LQE8_ORYSJ Os01g0819800 OJ1529_G03.20 OSNPB_010819800 ENOG411DTY1 MAP65-5 Q9ZVJ3 MA655_ARATH 65-kDa microtubule-associated protein 5 (AtMAP65-5) FUNCTION: Microtubule-associated protein that bundle and stabilize adjacent microtubules (MT) of the cell cortex. Confers MT resistance to the drug oryzalin. Promotes the formation of a planar network of antiparallel microtubules. {ECO:0000269|PubMed:15557096, ECO:0000269|PubMed:18667529}. 62653 65-kDa microtubule-associated protein 5 (AtMAP65-5) cell cortex [GO:0005938]; microtubule [GO:0005874]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasmodesma [GO:0009506]; spindle [GO:0005819]; microtubule binding [GO:0008017]; cytokinesis [GO:0000910]; microtubule cytoskeleton organization [GO:0000226] AT2G38720 microtubule-associated protein Os05g0409400 protein (Fragment) A0A0P0WMH4 A0A0P0WMH4_ORYSJ Os05g0409400 OSNPB_050409400 ENOG411DTY0 SRF1,SRF3 Q06BH3,Q6R2K3,A0A1P8B0M4 SRF1_ARATH,SRF3_ARATH,A0A1P8B0M4_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 1 (Leucine-rich repeat receptor kinase-like protein SRF1),Protein STRUBBELIG-RECEPTOR FAMILY 3 (Leucine-rich repeat receptor kinase-like protein SRF3),STRUBBELIG-receptor family 1 DISRUPTION PHENOTYPE: Plants do not show root phenotype alteration. {ECO:0000269|PubMed:17027738}. FUNCTION: Not essential for epidermal patterning and not redundant with STRUBBELIG. {ECO:0000269|PubMed:17027738, ECO:0000269|PubMed:17397538}. MISCELLANEOUS: Over-expression of SRF1B induces no obvious phenotypes while overexpression of SRF1A may lead to seedling lethality in both cv. Landsberg and cv. Columbia.,MISCELLANEOUS: Over-expression of SRF3 led to male-sterility in both cv. Landsberg and cv. Columbia. R-ATH-446652; 84824,84720,70510 Protein STRUBBELIG-RECEPTOR FAMILY 1 (Leucine-rich repeat receptor kinase-like protein SRF1),Protein STRUBBELIG-RECEPTOR FAMILY 3 (Leucine-rich repeat receptor kinase-like protein SRF3),STRUBBELIG-receptor family 1 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; circadian rhythm [GO:0007623]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. Low expression in seedlings and siliques. {ECO:0000269|PubMed:17397538}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17397538}. locus:2051404;,locus:2125566; AT2G20850,AT4G03390 strubbelig-receptor family Os02g0176100 protein (Putative leucine-rich repeat transmembrane protein kinase) (cDNA clone:001-114-G09, full insert sequence),Os06g0660800 protein (Fragment),Os07g0565400 protein (Fragment),Os02g0176100 protein (Fragment) Q6EUQ1,Q0DAD7,A0A0P0X7T6,A0A0P0VFL8,A0A0P0VFH0 Q6EUQ1_ORYSJ,Q0DAD7_ORYSJ,A0A0P0X7T6_ORYSJ,A0A0P0VFL8_ORYSJ,A0A0P0VFH0_ORYSJ OJ1077_E05.22-1 Os02g0176100 OSNPB_020176100,Os06g0660800 Os06g0660800 OSNPB_060660800,Os07g0565400 OSNPB_070565400,Os02g0176100 OSNPB_020176100 ENOG411DTY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q0DKB2 Q0DKB2_ORYSJ Os05g0177500 Os05g0177500 OSNPB_050177500 ENOG411DTY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein 39 Calcium-binding protein 39, putative, expressed (Os03g0172200 protein) (cDNA clone:J023008H01, full insert sequence) Q10R42 Q10R42_ORYSJ Os03g0172200 LOC_Os03g07600 Os03g0172200 OsJ_09596 OSNPB_030172200 ENOG411DTY5 PER21 Q42580,F4IQ05 PER21_ARATH,F4IQ05_ARATH Peroxidase 21 (Atperox P21) (EC 1.11.1.7) (ATP2a/ATP2b) (PRXR5),Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: Might function as heat shock-like defense protein. May be implicated in the systemic acquired resistance response.,FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G37130-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 36741,33272 Peroxidase 21 (Atperox P21) (EC 1.11.1.7) (ATP2a/ATP2b) (PRXR5),Peroxidase (EC 1.11.1.7) cytosol [GO:0005829]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; defense response to fungus [GO:0050832]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979]; rhythmic process [GO:0048511],extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Up-regulated during leaf development. {ECO:0000269|Ref.11}. TISSUE SPECIFICITY: Preferentially expressed in roots and leaves, slightly in stems. locus:2061794; AT2G37130 peroxidase Peroxidase (EC 1.11.1.7) (Fragment) A0A0N7KP42 A0A0N7KP42_ORYSJ Os07g0694300 OSNPB_070694300 ENOG411DTY4 A4IJ32,A0A1I9LNU0,A0A178VI87 A4IJ32_ARATH,A0A1I9LNU0_ARATH,A0A178VI87_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g12940),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 53001,51842,54746 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g12940),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein locus:2089245; AT3G12940 NA Os07g0496900 protein (Fragment) A0A0P0X710,A0A0N7KNH2 A0A0P0X710_ORYSJ,A0A0N7KNH2_ORYSJ Os07g0496900 OSNPB_070496900 ENOG411DPPK A0A1P8ATG0,F4ID59 A0A1P8ATG0_ARATH,F4ID59_ARATH Protein kinase superfamily protein 51799,62039 Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672],kinase activity [GO:0016301] locus:2009764; AT1G65950 ABC1 family Os11g0549686 protein (Fragment),Os11g0549635 protein A0A0P0Y336,A0A0P0Y374 A0A0P0Y336_ORYSJ,A0A0P0Y374_ORYSJ Os11g0549686 OSNPB_110549686,Os11g0549635 OSNPB_110549635 ENOG411DPPM F9D24.20,MHK10.9 Q9M2K5,Q9SLC2,F4J4N6 Q9M2K5_ARATH,Q9SLC2_ARATH,F4J4N6_ARATH Uncharacterized protein F9D24.20,Uncharacterized protein At2g42370,Uncharacterized protein 90151,82431,86805 Uncharacterized protein F9D24.20,Uncharacterized protein At2g42370,Uncharacterized protein locus:2085415;,locus:2053802; AT3G58110,AT2G42370 Inherit from NOG: AHNAK nucleoprotein Os06g0538200 protein A0A0P0WXX3 A0A0P0WXX3_ORYSJ Os06g0538200 OSNPB_060538200 ENOG411DPPN UKL2,UKL1 Q9LK34,Q9FKS0 UKL2_ARATH,UKL1_ARATH Uridine kinase-like protein 2, chloroplastic [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase-like protein 1, chloroplastic [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)] DISRUPTION PHENOTYPE: No visible phenotype. No decrease in uracil phosphoribosyltransferase activity. {ECO:0000269|PubMed:19563437}.,DISRUPTION PHENOTYPE: No visible phenotype. No decrease in uracil phosphoribosyltransferase activity. Loss of sensitivity to 5'-fluorouracil and 5'-fluorouridine. {ECO:0000269|PubMed:17143579, ECO:0000269|PubMed:19563437}. The chlorophyll content of the wild-type plants decreased with increasing 5-FU and 5-FD concentrations and the lowest chlorophyll content was obtained with 400 μM of 5-FU or 5-FD treatments. However the chlorophyll content of the mutant plants was not affected by the 5-FU and 5-FD treatment.,supplementing with various concentrations of 5-fluorouracil (5-FU) and 5-fluorouridine (5-FD) (0-400 ;M). The wild-type plants showed high sensitivity to both 5-FU and 5-FD whereas mutant plants remained unaffected. The growth of wild-type plants decreased with increasing 5-FU concentration and the highest growth retardation was observed in the plants treated with 400 ;M of 5-FU. Drastic growth retardation of wild-type plants was seen when they were treated with 5-FD. All plants were virtually killed except those treated with 50 ;M of 5-FD. Resistant to toxic pyrimidine analogs-S. Kim-2006 FUNCTION: Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure. {ECO:0000269|PubMed:19563437}.,FUNCTION: Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure. {ECO:0000269|PubMed:17143579, ECO:0000269|PubMed:19563437}. PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.; PATHWAY: Pyrimidine metabolism; CTP biosynthesis via salvage pathway; CTP from cytidine: step 1/3.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1. ARA:AT3G27190-MONOMER;,ARA:AT5G40870-MONOMER; R-ATH-73614; 2.4.2.9;2.7.1.48; 2.7.1.48; 2.4.2.9 54210,54430 Uridine kinase-like protein 2, chloroplastic [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase-like protein 1, chloroplastic [Includes: Uridine kinase (UK) (EC 2.7.1.48); Putative uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)] chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; transferase activity, transferring glycosyl groups [GO:0016757]; uridine kinase activity [GO:0004849]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; CTP salvage [GO:0044211]; regulation of cellulose biosynthetic process [GO:2001006]; regulation of lignin biosynthetic process [GO:1901141]; regulation of starch metabolic process [GO:2000904]; UMP salvage [GO:0044206],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845]; uridine kinase activity [GO:0004849]; CTP salvage [GO:0044211]; pyrimidine nucleobase metabolic process [GO:0006206]; regulation of starch metabolic process [GO:2000904]; UMP salvage [GO:0044206] TISSUE SPECIFICITY: Expressed in leaves, roots, stems and flowers. {ECO:0000269|PubMed:17143579}. locus:2086523;,locus:2164516; AT3G27190,AT5G40870 uridine kinase Uridine kinase (EC 2.7.1.48) Q0J0L4,Q6ZIA3 Q0J0L4_ORYSJ,Q6ZIA3_ORYSJ Os09g0505800 Os09g0505800 OSNPB_090505800,Os08g0530000 Os08g0530000 OJ1770_H02.29 OJ1789_C07.8 OSNPB_080530000 ENOG411DPPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cation H( ) antiporter 15-like NA NA NA NA NA NA NA ENOG411DPPB DJC65 Q9SH08,A0A1P8ASJ9 Q9SH08_ARATH,A0A1P8ASJ9_ARATH At1g77930 (Chaperone DnaJ-domain superfamily protein) (F28K19.14),Chaperone DnaJ-domain superfamily protein 31907,24323 At1g77930 (Chaperone DnaJ-domain superfamily protein) (F28K19.14),Chaperone DnaJ-domain superfamily protein chloroplast [GO:0009507] locus:2029381; AT1G77930 DnaJ domain NA NA NA NA NA NA NA ENOG411DPPD CPK27,CPK9,CPK31,CPK33 Q9ZSA4,Q38868,Q9S9V0,Q9C6P3,A0A1P8ANC2,A0A1P8AND9 CDPKR_ARATH,CDPK9_ARATH,CDPKV_ARATH,CDPKX_ARATH,A0A1P8ANC2_ARATH,A0A1P8AND9_ARATH Calcium-dependent protein kinase 27 (EC 2.7.11.1),Calcium-dependent protein kinase 9 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 9),Calcium-dependent protein kinase 31 (EC 2.7.11.1),Calcium-dependent protein kinase 33 (EC 2.7.11.1),Calcium-dependent protein kinase 33 DISRUPTION PHENOTYPE: Increased sensitivity to abscisic acid stomatal closure (PubMed:26662273). Delayed floral transition (PubMed:25661797). {ECO:0000269|PubMed:25661797, ECO:0000269|PubMed:26662273}. FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger.,FUNCTION: Ca(2+)-dependent protein kinase (PubMed:26662273). Negative regulator of stomatal closure and slow anion currents (PubMed:26662273). Unable to phosphorylate THI1 in vitro, but the kinase activity is essential for the stomatal closure regulation (PubMed:26662273). Phosphorylates FD (PubMed:25661797). May play a role in signal transduction pathways that involve calcium as a second messenger (Probable). {ECO:0000269|PubMed:26662273, ECO:0000305|PubMed:12068094}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 54899,60363,54697,58606,61642,53679 Calcium-dependent protein kinase 27 (EC 2.7.11.1),Calcium-dependent protein kinase 9 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 9),Calcium-dependent protein kinase 31 (EC 2.7.11.1),Calcium-dependent protein kinase 33 (EC 2.7.11.1),Calcium-dependent protein kinase 33 cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; response to salicylic acid [GO:0009751],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in primary roots, leaves, inflorescences, siliques and guard cells (PubMed:26662273). Expressed in the shoot apical meristem (PubMed:25661797). {ECO:0000269|PubMed:25661797, ECO:0000269|PubMed:26662273}. locus:2138877;,locus:2092399;,locus:504955360;,locus:2015846; AT4G04700,AT3G20410,AT4G04695,AT1G50700 calcium-dependent protein kinase Calcium-dependent protein kinase 19 (OsCDPK19) (OsCPK19) (EC 2.7.11.1) (Calcium-dependent protein kinase isoform 2) (OsCDPK2) (OsCPK2) P53683 CDPKJ_ORYSJ CPK19 CPK2 Os07g0515100 LOC_Os07g33110 P0048D08.112 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411DTYZ TOL1 Q9LFL3,F4KFJ2 TOL1_ARATH,F4KFJ2_ARATH TOM1-like protein 1,Target of Myb protein 1 FUNCTION: Might contribute to the loading of the ESCRT machinery. {ECO:0000305|PubMed:16488176}. R-ATH-432720;R-ATH-5689901;R-ATH-6798695; 45311,33343 TOM1-like protein 1,Target of Myb protein 1 cytosol [GO:0005829]; plasma membrane [GO:0005886]; intracellular protein transport [GO:0006886],intracellular [GO:0005622]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:24699223}. locus:2148121; AT5G16880 TOM1-like protein Os02g0697300 protein (Putative target of myb1) (TOM1 protein) (cDNA clone:J013047D24, full insert sequence) Q6YUH7 Q6YUH7_ORYSJ tom1 Os02g0697300 OsJ_08026 OSNPB_020697300 P0459B01.3 P0666E12.11 ENOG411DTYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain Os07g0621300 protein (Fragment) A0A0P0X923,A0A0P0X8Y8 A0A0P0X923_ORYSJ,A0A0P0X8Y8_ORYSJ Os07g0621300 OSNPB_070621300 ENOG411DTYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os04g0272700 protein,Os04g0273600 protein (Fragment),Os04g0274100 protein (Fragment) Q7XSX9,A0A0P0W801,A0A0P0W805,A0A0P0W828 Q7XSX9_ORYSJ,A0A0P0W801_ORYSJ,A0A0P0W805_ORYSJ,A0A0P0W828_ORYSJ Os04g0272700 OSJNBb0056F09.17 OSNPB_040272700,Os04g0272700 OSNPB_040272700,Os04g0273600 OSNPB_040273600,Os04g0274100 OSNPB_040274100 ENOG411DPPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter activity Probable aquaporin TIP4-1 (Tonoplast intrinsic protein 4-1) (OsTIP4;1),Os05g0231700 protein (Fragment) Q75GA5,A0A0P0WJN9 TIP41_ORYSJ,A0A0P0WJN9_ORYSJ TIP4-1 Os05g0231700 LOC_Os05g14240 OsJ_016926 OSJNBa0042F15.10,Os05g0231700 OSNPB_050231700 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DTYQ ABCG3 Q9ZUU9 AB3G_ARATH ABC transporter G family member 3 (ABC transporter ABCG.3) (AtABCG3) (White-brown complex homolog protein 3) (AtWBC3) R-ATH-1369062; 81039 ABC transporter G family member 3 (ABC transporter ABCG.3) (AtABCG3) (White-brown complex homolog protein 3) (AtWBC3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2046203; AT2G28070 ABC transporter ABC transporter family protein, putative, expressed (Os03g0859500 protein) (cDNA clone:J023056J01, full insert sequence) Q10AA7 Q10AA7_ORYSJ LOC_Os03g64200 Os03g0859500 OSNPB_030859500 ENOG411DTYP RRP44A,EMB2763 Q9SHL7,F4INI6 RP44A_ARATH,F4INI6_ARATH Exosome complex exonuclease RRP44 homolog A (RRP44 homolog A) (EC 3.1.13.-) (EC 3.1.26.-) (Protein EMBRYO DEFECTIVE 2763) (Ribosomal RNA-processing protein 44A) (AtRRP44A),Ribonuclease II family protein DISRUPTION PHENOTYPE: Aborted development of female gametophytes. {ECO:0000269|PubMed:20798041, ECO:0000269|PubMed:24244451}. Embryo defective; Preglobular / Globular-D. Meinke-2007 FUNCTION: Catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Required for 5.8S rRNA intermediate processing and the degradation of 5' external transcribed spacer (5' ETS), a maturation by-product of rRNA synthesis. Is not involved in the degradation of turnip crinkle virus (TCV) RNA and significant virus resistance (PubMed:24244451). Required for normal development of female gametophytes and early embryogenesis (PubMed:20798041, PubMed:24244451). {ECO:0000269|PubMed:20798041, ECO:0000269|PubMed:24244451}. R-ATH-429958;R-ATH-450604; 3.1.13.-; 3.1.26.- 104996,113960 Exosome complex exonuclease RRP44 homolog A (RRP44 homolog A) (EC 3.1.13.-) (EC 3.1.26.-) (Protein EMBRYO DEFECTIVE 2763) (Ribosomal RNA-processing protein 44A) (AtRRP44A),Ribonuclease II family protein exosome (RNase complex) [GO:0000178]; nucleus [GO:0005634]; endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; rRNA processing [GO:0006364],exosome (RNase complex) [GO:0000178]; 3'-5'-exoribonuclease activity [GO:0000175]; endonuclease activity [GO:0004519]; RNA catabolic process [GO:0006401]; rRNA processing [GO:0006364] locus:2053918; AT2G17510 exosome complex exonuclease Os03g0129200 protein A0A0N7KGI5 A0A0N7KGI5_ORYSJ Os03g0129200 OSNPB_030129200 ENOG411DTYW MRB17.13 Q9FIU1,O81827,A0A1P8B4D5 Q9FIU1_ARATH,O81827_ARATH,A0A1P8B4D5_ARATH AT5g54630/MRB17_13 (Zinc finger protein-like protein),At4g27240 (Uncharacterized protein At4g27240) (Zinc finger (C2H2 type) family protein),Zinc finger (C2H2 type) family protein 50899,47290,47251 AT5g54630/MRB17_13 (Zinc finger protein-like protein),At4g27240 (Uncharacterized protein At4g27240) (Zinc finger (C2H2 type) family protein),Zinc finger (C2H2 type) family protein nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],nucleic acid binding [GO:0003676] locus:2172109;,locus:2131724; AT5G54630,AT4G27240 C2H2 zinc finger protein Os01g0785900 protein (cDNA clone:001-017-D01, full insert sequence) (cDNA clone:J023079O17, full insert sequence) Q8LQM0 Q8LQM0_ORYSJ Os01g0785900 Os01g0785900 B1070A12.33 OSNPB_010785900 ENOG411DTYV P93747 P93747_ARATH At2g41990 (Late embryogenesis abundant protein) (Uncharacterized protein At2g41990) 33113 At2g41990 (Late embryogenesis abundant protein) (Uncharacterized protein At2g41990) integral component of membrane [GO:0016021] locus:2064637; AT2G41990 Late embryogenesis abundant protein Os02g0667600 protein (cDNA clone:J033044J15, full insert sequence),Os02g0667600 protein (cDNA clone:002-146-F05, full insert sequence),Os02g0667600 protein Q6ET94,B7F2N7,A0A0P0VN49 Q6ET94_ORYSJ,B7F2N7_ORYSJ,A0A0P0VN49_ORYSJ OJ1486_E07.31-1 Os02g0667600 OJ1725_H08.8-1 OSNPB_020667600,Os02g0667600 OSNPB_020667600 ENOG411DTYU Q9FHQ1,A0A1P8BH21 GDL80_ARATH,A0A1P8BH21_ARATH GDSL esterase/lipase At5g37690 (EC 3.1.1.-) (Extracellular lipase At5g37690),SGNH hydrolase-type esterase superfamily protein ARA:AT5G37690-MONOMER; 3.1.1.- 39211,38369 GDSL esterase/lipase At5g37690 (EC 3.1.1.-) (Extracellular lipase At5g37690),SGNH hydrolase-type esterase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2151744; AT5G37690 GDSL esterase lipase Os01g0238400 protein,Os06g0257600 protein (Putative proline-rich protein) (cDNA clone:002-149-C04, full insert sequence),Os02g0732800 protein,Os08g0488000 protein B9EUK9,Q652E9,A0A0P0VP97,A0A0P0XHF6 B9EUK9_ORYSJ,Q652E9_ORYSJ,A0A0P0VP97_ORYSJ,A0A0P0XHF6_ORYSJ Os01g0238400 OsJ_01040 OSNPB_010238400,Os06g0257600 Os06g0257600 OsJ_20868 OSNPB_060257600 P0603C10.15 P0624H09.38,Os02g0732800 OSNPB_020732800,Os08g0488000 OSNPB_080488000 ENOG411DTYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2 3 complex (By similarity) NA NA NA NA NA NA NA ENOG411DTYK ABC1K3 Q9MA15 AB1K3_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic (ABC1-LIKE KINASE 3) (EC 2.7.-.-) (EC 2.7.11.1) (Protein REPRESSOR OF BDR1) DISRUPTION PHENOTYPE: Suppression of the bleaching and dwarf phenotypes of plants lacking ABC1K1 in red light, associated with the rescue of chlorophylls and carotenoid contents as well as D1 protein level, product of psbA, one of the four core subunits of the photosystem II (PSII) (PubMed:25882344). Slight reduction of nonphotochemical quenching after high light intensity treatment. Abnormal chloroplast ultrastructure with slightly scattered thylakoid grana and reduced starch granules accumulation in normal light. In high light (HL), stronger phenotype with large scattered grana and extensive vacuolation as well as an increase in plastoglobule size and higher number of plastoglobule clusters, but no starch granule (PubMed:23632854). Impaired for the production of plastochromanol-8 (a plastoquinone-derived lipid antioxidant) and the redox recycling of alpha-tocopherol, but normal tocopherol. Increased accumulation of VTE1 and PAP1/FBN1a transcripts, but reduced levels of proteins fibrillin-1a (PAP1/FBN1a) and tocopherol cyclase (VTE1) due to protein instability and leading to abnormal accumulation of the alpha-tocopherol (alpha-T) oxidative- derivate alpha-tocopherol quinone (alpha-TQ) (PubMed:23632854). Conditional light stress phenotype in the double mutant abc1k1 abc1k3 that displays rapid chlorosis upon high light stress and slower, but irreversible, senescence-like phenotype during moderate light stress, drought or nitrogen limitation, but not cold stress. This senescence-like phenotype is associated with the degradation of the photosystem II core and up-regulation of chlorophyll degradation. During light stress, modified prenyl-lipid composition in plastoglobules (PG) probably due to reduced VTE1 activity and loss of CCD4, as well as abnormal recruitement of plastid jasmonate biosynthesis enzymes in PG (PubMed:23673981). {ECO:0000269|PubMed:23632854, ECO:0000269|PubMed:23673981, ECO:0000269|PubMed:25882344}. FUNCTION: Kinase that can phosphorylate the tocopherol cyclase VTE1, a key enzyme of tocopherol (vitamin E) metabolism and involved in the recycling of oxidated alpha-tocopherol quinone, possibly stabilizing it at plastoglobules. Regulates also membrane prenylquinone composition (PubMed:23632854). Required for photooxidative stress responses to prevent photosystem II core and chlorophyll degradations. Together with ABC1K1, contributes to plastoglobule (PG) function in prenyl-lipid metabolism, stress response, and thylakoid remodeling (PubMed:23673981, PubMed:23632854). Promotes photodamage of chloroplasts under continuous red light, thus working in opposition to ABC1K1 (PubMed:25882344). {ECO:0000269|PubMed:23632854, ECO:0000269|PubMed:23673981, ECO:0000269|PubMed:25882344}. ARA:GQT-2753-MONOMER; 2.7.-.-; 2.7.11.1 79022 Protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic (ABC1-LIKE KINASE 3) (EC 2.7.-.-) (EC 2.7.11.1) (Protein REPRESSOR OF BDR1) chloroplast [GO:0009507]; plastoglobule [GO:0010287]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; cellular response to nitrogen starvation [GO:0006995]; chloroplast organization [GO:0009658]; plastoglobule organization [GO:0080177]; protein stabilization [GO:0050821]; regulation of tocopherol cyclase activity [GO:1902171]; response to high light intensity [GO:0009644]; response to photooxidative stress [GO:0080183]; response to red light [GO:0010114]; response to water deprivation [GO:0009414] locus:2019838; AT1G79600 ABC1 family Os05g0323800 protein (Fragment) A0A0P0WKQ1,A0A0P0WKU1 A0A0P0WKQ1_ORYSJ,A0A0P0WKU1_ORYSJ Os05g0323800 OSNPB_050323800 ENOG411DTYJ CCT2 Q940P8 TCPB_ARATH T-complex protein 1 subunit beta (TCP-1-beta) (CCT-beta) (Chaperonin CCT2) FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. {ECO:0000305}. R-ATH-390471;R-ATH-6798695;R-ATH-6814122; 57286 T-complex protein 1 subunit beta (TCP-1-beta) (CCT-beta) (Chaperonin CCT2) anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; chaperonin-containing T-complex [GO:0005832]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077] locus:2147132; AT5G20890 t-complex protein 1 Os05g0556700 protein (Fragment),Os03g0619400 protein (Putative TCP-1/cpn60 chaperonin family protein) (T-complex protein 1, beta subunit, putative, expressed) (TCP-1/cpn60 chaperonin) Q0DG27,Q6AV23 Q0DG27_ORYSJ,Q6AV23_ORYSJ Os05g0556700 Os05g0556700 OSNPB_050556700,Os03g0619400 LOC_Os03g42220 OsJ_11750 OSJNBa0063J18.19 OSNPB_030619400 FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. ENOG411DTYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411DTYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411DTYC AHL15 Q9M2S3 AHL15_ARATH AT-hook motif nuclear-localized protein 15 (AT-hook protein of GA feedback 2) FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Binds the DNA sequence GNFEI (GA-negative feedback element I) in the GA3OX1 promoter (PubMed:17277098). Negatively regulates plant innate immunity (PTI) to pathogens through the down-regulation of the PAMP-triggered FRK1 expression (PubMed:20738724). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:17277098, ECO:0000269|PubMed:20738724}. MISCELLANEOUS: Overexpression of AHL15 results in a decreased flg22-induced expression of FRK1. {ECO:0000269|PubMed:20738724}. 32603 AT-hook motif nuclear-localized protein 15 (AT-hook protein of GA feedback 2) nucleus [GO:0005634]; AT DNA binding [GO:0003680]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; innate immune response [GO:0045087]; negative regulation of innate immune response [GO:0045824]; transcription, DNA-templated [GO:0006351] locus:2099956; AT3G55560 AT-hook protein of GA feedback 2 NA NA NA NA NA NA NA ENOG411DTYA Q9ZVI3,Q8GYR4,A0A1I9LT54 QKIL3_ARATH,QKIL4_ARATH,A0A1I9LT54_ARATH KH domain-containing protein At2g38610 (Quaking-like protein 3),KH domain-containing protein At3g08620 (Quaking-like protein 4),RNA-binding KH domain-containing protein R-ATH-8849468; 31721,31501,26502 KH domain-containing protein At2g38610 (Quaking-like protein 3),KH domain-containing protein At3g08620 (Quaking-like protein 4),RNA-binding KH domain-containing protein cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729],nucleus [GO:0005634]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2064097;,locus:2077818; AT2G38610,AT3G08620 KH domain-containing protein KH domain-containing protein SPIN1 (SPL11-interacting protein 1),KH domain-like protein (Os07g0227400 protein) (cDNA clone:J023024E22, full insert sequence) Q75GR5,Q8H2M0 SPIN1_ORYSJ,Q8H2M0_ORYSJ SPIN1 Os03g0815700 LOC_Os03g60110 OsJ_13097 OSJNBb0042K11.3,Os07g0227400 Os07g0227400 OSJNBa0066H10.133 OSNPB_070227400 FUNCTION: Involved in flowering time control. Binds DNA and RNA in vitro. {ECO:0000269|PubMed:18586868}. ENOG411DTYG KIN1 Q8GW44 KN1_ARATH Kinesin-like protein KIN-1 (AtKIN-1) (AtPSS1) (Pollen semi-sterility protein 1) DISRUPTION PHENOTYPE: Partial seed abortion due to defects in megagametogenesis (PubMed:24667993, PubMed:25330379). Defects in pollen viability (PubMed:25330379). {ECO:0000269|PubMed:24667993, ECO:0000269|PubMed:25330379}. FUNCTION: Kinesin-like motor protein that promotes synapsis and is required for proper crossover distribution in meiosis (PubMed:25330379). Plays a role in the nuclear division cycles during megagametogenesis (PubMed:24667993). {ECO:0000269|PubMed:24667993, ECO:0000269|PubMed:25330379}. R-ATH-6811434;R-ATH-983189; 51407 Kinesin-like protein KIN-1 (AtKIN-1) (AtPSS1) (Pollen semi-sterility protein 1) microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; protein homodimerization activity [GO:0042803]; megagametogenesis [GO:0009561]; microtubule-based movement [GO:0007018]; pollen development [GO:0009555]; seed development [GO:0048316]; synapsis [GO:0007129] TISSUE SPECIFICITY: Specifically expressed in ovules and anthers. {ECO:0000269|PubMed:24667993}. locus:2087378; AT3G63480 kinesin-related protein 3-like Kinesin-like protein KIN-1 (Kinesin-1-like protein PSS1) (Pollen semi-sterility protein 1) F9W301 KN1_ORYSJ KIN1 PSS1 Os08g0117000 LOC_Os08g02380 OsJ_25827 P0470F10.15 FUNCTION: Kinesin-like motor protein that exhibits microtubule-stimulated ATPase activity. Plays an essential role in male meiotic chromosomal dynamics, male gametogenesis and anther dehiscence. May play a minor and nonessential role in regulating meiotic spindle formation. {ECO:0000269|PubMed:21282525}. ENOG411DTYF RABD2B,RABD2A,RABD2C Q9FPJ4,P28188,Q9SEH3 RAD2B_ARATH,RAD2A_ARATH,RAD2C_ARATH Ras-related protein RABD2b (AtRABD2b) (Ras-related protein Rab1A) (AtRab1A),Ras-related protein RABD2a (AtRABD2a) (Ras-related protein Ara-5) (Ras-related protein Rab1B) (AtRab1B),Ras-related protein RABD2c (AtRABD2c) (Ras-related protein Rab1C) (AtRab1C) FUNCTION: Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity). {ECO:0000250}.,FUNCTION: Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). {ECO:0000269|PubMed:11090219, ECO:0000269|PubMed:11874578}. R-ATH-204005;R-ATH-6807878;R-ATH-6811434;R-ATH-8873719;R-ATH-8876198; 22313,22648,22318 Ras-related protein RABD2b (AtRABD2b) (Ras-related protein Rab1A) (AtRab1A),Ras-related protein RABD2a (AtRABD2a) (Ras-related protein Ara-5) (Ras-related protein Rab1B) (AtRab1B),Ras-related protein RABD2c (AtRABD2c) (Ras-related protein Rab1C) (AtRab1C) endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ER to Golgi vesicle-mediated transport [GO:0006888]; pollen tube growth [GO:0009860]; protein transport [GO:0015031],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; trans-Golgi network membrane [GO:0032588]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ER to Golgi vesicle-mediated transport [GO:0006888]; pollen development [GO:0009555]; pollen tube growth [GO:0009860]; protein transport [GO:0015031] locus:2171484;,locus:2205603;,locus:2129161; AT5G47200,AT1G02130,AT4G17530 gtp-binding protein Ras-related protein RIC1,Os02g0653800 protein (Putative GTP-binding protein YPTM2) (cDNA, clone: J100058B03, full insert sequence),Os01g0179700 protein (cDNA clone:006-208-C02, full insert sequence) (cDNA clone:J023036J02, full insert sequence) P40392,Q6H8G2,Q0JQ62 RIC1_ORYSJ,Q6H8G2_ORYSJ,Q0JQ62_ORYSJ RIC1 Os01g0558600 LOC_Os01g37800 B1064G04.9 B1144D11.31 OsJ_02222,Os02g0653800 OsJ_07768 OSNPB_020653800 P0491E01.39,Os01g0179700 Os01g0179700 OsJ_00614 OSNPB_010179700 FUNCTION: Possesses GTPase activity. ENOG411DTYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DTYD DAP Q93ZN9 DAPAT_ARATH LL-diaminopimelate aminotransferase, chloroplastic (AtDAP-AT) (DAP-AT) (DAP-aminotransferase) (LL-DAP-aminotransferase) (EC 2.6.1.83) (Protein ABERRANT GROWTH AND DEATH 2) DISRUPTION PHENOTYPE: Embryonic lethality. {ECO:0000269|PubMed:14729919}. Embryo defective; Preglobular-J. Greenberg-2004 FUNCTION: Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Not active with meso-diaminopimelate, lysine or ornithine as substrates. {ECO:0000269|PubMed:16361515, ECO:0000269|PubMed:17583737, ECO:0000269|PubMed:18952095, ECO:0000269|PubMed:21435399}. MISCELLANEOUS: The expected covalent binding of pyridoxal phosphate by Lys-305 has not been observed in the 3D-structure. PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (aminotransferase route): step 1/1. ARA:AT4G33680-MONOMER;MetaCyc:AT4G33680-MONOMER; 2.6.1.83; Biosynthesis of secondary metabolites (01110),Biosynthesis of amino acids (01230),Lysine biosynthesis (00300),Metabolic pathways (01100) 2.6.1.83 50396 LL-diaminopimelate aminotransferase, chloroplastic (AtDAP-AT) (DAP-AT) (DAP-aminotransferase) (LL-DAP-aminotransferase) (EC 2.6.1.83) (Protein ABERRANT GROWTH AND DEATH 2) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; copper ion binding [GO:0005507]; L,L-diaminopimelate aminotransferase activity [GO:0010285]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; lysine biosynthetic process via diaminopimelate [GO:0009089]; response to cytokinin [GO:0009735]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862] DEVELOPMENTAL STAGE: Down-regulated during senescence. {ECO:0000269|PubMed:14729919}. TISSUE SPECIFICITY: Highly expressed in seedlings, roots, stems, flowers and leaves. Lower expression in siliques. {ECO:0000269|PubMed:14729919}. locus:2134243; AT4G33680 LL-diaminopimelate aminotransferase Probable LL-diaminopimelate aminotransferase, chloroplastic (DAP-AT) (DAP-aminotransferase) (LL-DAP-aminotransferase) (EC 2.6.1.83) Q10MQ2 DAPAT_ORYSJ AGD2 Os03g0299900 LOC_Os03g18810 OsJ_27598 FUNCTION: Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli (By similarity). {ECO:0000250}. ENOG411E4P3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E4P2 ZAT5 Q681X4 ZAT5_ARATH Zinc finger protein ZAT5 FUNCTION: Probable transcription factor that may be involved in stress responses. {ECO:0000250}. 31047 Zinc finger protein ZAT5 nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}. locus:2046153; AT2G28200 zinc finger protein NA NA NA NA NA NA NA ENOG411E4P1 ISCA Q9XIK3 ISCAP_ARATH Iron-sulfur assembly protein IscA, chloroplastic (Plastid SufA-like protein) (Protein scaffold protein AtCpIscA) FUNCTION: Involved in the assembly of chloroplastic iron-sulfur proteins. Is able to transfer iron-sulfur clusters to apo-ferredoxin. {ECO:0000269|PubMed:15888686}. 19337 Iron-sulfur assembly protein IscA, chloroplastic (Plastid SufA-like protein) (Protein scaffold protein AtCpIscA) chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; 2 iron, 2 sulfur cluster binding [GO:0051537]; ferrous iron binding [GO:0008198]; structural molecule activity [GO:0005198]; iron-sulfur cluster assembly [GO:0016226]; protein maturation by iron-sulfur cluster transfer [GO:0097428] TISSUE SPECIFICITY: Ubiquitous with higher expression level in green, photosynthetic tissues. {ECO:0000269|PubMed:15888686}. locus:2194594; AT1G10500 iron-sulfur assembly protein HesB-like domain-containing protein-like (Os06g0146400 protein) (cDNA clone:J023067D06, full insert sequence) Q5VP48 Q5VP48_ORYSJ Os06g0146400 Os06g0146400 OsJ_20119 OSNPB_060146400 P0036F10.19 ENOG411E4P0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0530700 protein (cDNA clone:J013031M18, full insert sequence),Os07g0530700 protein (Fragment) Q8GVP5,A0A0P0X760 Q8GVP5_ORYSJ,A0A0P0X760_ORYSJ P0681F05.121-1 Os07g0530700 OsJ_24537 OSNPB_070530700,Os07g0530700 OSNPB_070530700 ENOG411E4P7 OEP163,T10K17.110 O48528,Q9M2Q8 OP163_ARATH,Q9M2Q8_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial (Chloroplastic outer envelope pore protein of 16 kDa 3) (AtOEP16-3) (OEP16-3) (Mitochondrial complex I subunit B14.7),Import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (Uncharacterized protein T10K17.110) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22730406}. FUNCTION: Voltage-dependent high-conductance channel with a slight cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars. Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB (By similarity). {ECO:0000250}. 16999,7779 Outer envelope pore protein 16-3, chloroplastic/mitochondrial (Chloroplastic outer envelope pore protein of 16 kDa 3) (AtOEP16-3) (OEP16-3) (Mitochondrial complex I subunit B14.7),Import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (Uncharacterized protein T10K17.110) chloroplast [GO:0009507]; chloroplast outer membrane [GO:0009707]; membrane [GO:0016020]; mitochondrial outer membrane [GO:0005741]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; plastid outer membrane [GO:0009527]; pore complex [GO:0046930]; porin activity [GO:0015288]; protein channel activity [GO:0015266]; protein homodimerization activity [GO:0042803]; ion transport [GO:0006811]; protein localization to organelle [GO:0033365],protein channel activity [GO:0015266]; protein localization to organelle [GO:0033365] locus:2059989;,locus:2095763; AT2G42210,AT3G57900 Mitochondrial import inner membrane translocase subunit Os02g0717300 protein (cDNA clone:J013037P14, full insert sequence) Q6ZGV9 Q6ZGV9_ORYSJ Os02g0717300 OJ1191_G08.41 OJ2056_H01.13 OsJ_08152 OSNPB_020717300 ENOG411E4P6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family UPF0047 NA NA NA NA NA NA NA ENOG411E4P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 family dimerisation domain Os10g0438100 protein (Skp1 family, dimerisation domain containing protein) Q7XE44 Q7XE44_ORYSJ Os10g0438100 LOC_Os10g30200 Os10g0438100 OsJ_31649 OSNPB_100438100 ENOG411E4P4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat Shock Protein NA NA NA NA NA NA NA ENOG411E4P9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2Fe-2S iron-sulfur cluster binding domain Ferredoxin Q5N7C3 Q5N7C3_ORYSJ Os01g0860601 Os01g0860601 OSNPB_010860601 P0489B03.32 P0679C12.22 FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. {ECO:0000256|RuleBase:RU364001}. ENOG411E4P8 Q9LFK6 Q9LFK6_ARATH AT5g16950/F2K13_100 (Krueppel-like factor) (Uncharacterized protein F2K13_100) 11192 AT5g16950/F2K13_100 (Krueppel-like factor) (Uncharacterized protein F2K13_100) integral component of membrane [GO:0016021] locus:2148106; AT5G16950 NA Os06g0184100 protein (cDNA clone:002-104-B04, full insert sequence),Os01g0258600 protein Q5SMP0,E3W9W9 Q5SMP0_ORYSJ,E3W9W9_ORYSJ DPL2 Os06g0184100 OsJ_20365 OSNPB_060184100 P0554A06.10,DPL1 Os01g0258600 OSNPB_010258600 ENOG411E4PS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0661766 protein A0A0P0WZI3 A0A0P0WZI3_ORYSJ Os06g0661766 OSNPB_060661766 ENOG411E4PR MPF21.10 Q9FGA2,A0A1P8BGN9,F4K7I8 Q9FGA2_ARATH,A0A1P8BGN9_ARATH,F4K7I8_ARATH At5g50090 (D-ribose-binding periplasmic protein) (Uncharacterized protein At5g50090),D-ribose-binding periplasmic protein 17440,15246,16683 At5g50090 (D-ribose-binding periplasmic protein) (Uncharacterized protein At5g50090),D-ribose-binding periplasmic protein locus:2170116; AT5G50090 NA NA NA NA NA NA NA NA ENOG411E4PQ I-2 F4KEU1,Q9LTK0 F4KEU1_ARATH,Q9LTK0_ARATH Phosphoprotein phosphatase inhibitor,AT5g52200/F17P19_10 (Phosphoprotein phosphatase inhibitor) FUNCTION: Inhibitor of protein-phosphatase 1 (PP1). Binds to and inhibits PP1 activity (PubMed:21222654, PubMed:26943172). Acts as negative regulator of abscisic acid (ABA) signaling. Enhances the inhibition of SRK2E/SNRK2.6 by TOPP1. May promote the interaction between TOPP1 and the ABA receptor PYL11 (PubMed:26943172). {ECO:0000269|PubMed:21222654, ECO:0000269|PubMed:26943172}. 16612,21097 Phosphoprotein phosphatase inhibitor,AT5g52200/F17P19_10 (Phosphoprotein phosphatase inhibitor) nucleus [GO:0005634]; protein phosphatase type 1 complex [GO:0000164]; protein phosphatase inhibitor activity [GO:0004864]; regulation of protein serine/threonine phosphatase activity [GO:0080163]; regulation of signal transduction [GO:0009966],protein phosphatase inhibitor activity [GO:0004864]; regulation of phosphoprotein phosphatase activity [GO:0043666]; regulation of signal transduction [GO:0009966] locus:2145146; AT5G52200 protein phosphatase inhibitor 2 containing protein expressed Os05g0301600 protein (cDNA clone:J033073L20, full insert sequence) Q0DJC4 Q0DJC4_ORYSJ Os05g0301600 Os05g0301600 OSNPB_050301600 ENOG411E4PP STR15,STR16,SEN1 Q38853,Q39129,A0A1P8B5Y0,A0A1P8B5Y3,A8MRI9,F4JZ17 STR15_ARATH,STR16_ARATH,A0A1P8B5Y0_ARATH,A0A1P8B5Y3_ARATH,A8MRI9_ARATH,F4JZ17_ARATH Rhodanese-like domain-containing protein 15, chloroplastic (Protein DARK INDUCIBLE 1) (Senescence-associated protein 1) (AtSEN1) (Sulfurtransferase 15) (AtStr15),Thiosulfate sulfurtransferase 16, chloroplastic (EC 2.8.1.1) (Rhodanese) (Senescence-associated protein) (Sulfurtransferase 16) (AtStr16),Rhodanese/Cell cycle control phosphatase superfamily protein,Sulfurtransferase protein 16 FUNCTION: Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate. {ECO:0000269|PubMed:12482606}. ARA:GQT-867-MONOMER;,ARA:AT5G66040-MONOMER; 2.8.1.1; 2.8.1.1 20079,12676,13593,17329,20037,6810 Rhodanese-like domain-containing protein 15, chloroplastic (Protein DARK INDUCIBLE 1) (Senescence-associated protein 1) (AtSEN1) (Sulfurtransferase 15) (AtStr15),Thiosulfate sulfurtransferase 16, chloroplastic (EC 2.8.1.1) (Rhodanese) (Senescence-associated protein) (Sulfurtransferase 16) (AtStr16),Rhodanese/Cell cycle control phosphatase superfamily protein,Sulfurtransferase protein 16 chloroplast [GO:0009507]; thylakoid [GO:0009579]; aging [GO:0007568]; response to jasmonic acid [GO:0009753]; response to oxidative stress [GO:0006979]; response to wounding [GO:0009611],chloroplast [GO:0009507]; thiosulfate sulfurtransferase activity [GO:0004792],transferase activity [GO:0016740] locus:2128038;,locus:2156937; AT4G35770,AT5G66040 biological_process Os06g0725000 protein (Fragment) A0A0P0X177 A0A0P0X177_ORYSJ Os06g0725000 OSNPB_060725000 ENOG411E4PW Q6NKV4,O81071 Q6NKV4_ARATH,O81071_ARATH At5g59410 (Rab5-interacting family protein),At2g29020/T9I4.10 (Expressed protein) (Putative Rab5-interacting protein) (Rab5-interacting family protein) 14493,14808 At5g59410 (Rab5-interacting family protein),At2g29020/T9I4.10 (Expressed protein) (Putative Rab5-interacting protein) (Rab5-interacting family protein) integral component of membrane [GO:0016021] locus:2148353;,locus:2066081; AT5G59410,AT2G29020 Rab5-interacting Os05g0110600 protein Q65XW1 Q65XW1_ORYSJ Os05g0110600 Os05g0110600 OSNPB_050110600 P0016H04.7 ENOG411E4PV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NA NA NA NA NA NA NA ENOG411E4PU GRXC6 Q8L9S3 GRXC6_ARATH Glutaredoxin-C6 (AtGrxC6) (Protein ROXY 21) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 15566 Glutaredoxin-C6 (AtGrxC6) (Protein ROXY 21) cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2123807; AT4G33040 Glutaredoxin NA NA NA NA NA NA NA ENOG411E4PT SMD1B,SMD1A Q9SY09,Q9SSF1 SMD1B_ARATH,SMD1A_ARATH Small nuclear ribonucleoprotein SmD1b (AtSmD1-b),Small nuclear ribonucleoprotein SmD1a (AtSmD1-a) DISRUPTION PHENOTYPE: Post-transcriptional gene silencing deficiency and developmental defects, including reduced stature, leaf serration and early flowering (PubMed:26842463). Smd1a and smd2b double mutants are embryo lethal (PubMed:26842463). {ECO:0000269|PubMed:26842463}.,DISRUPTION PHENOTYPE: No visible phenotype (PubMed:26842463). Smd1a and smd2b double mutants are embryo lethal (PubMed:26842463). {ECO:0000269|PubMed:26842463}. FUNCTION: Involved in splicing regulation. Facilitates post-transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. {ECO:0000269|PubMed:26842463}. MISCELLANEOUS: SMD1A and SMD1B have redundant activity, but consistent with their expression level, SMD1B is more important than SMD1A and either one copy of SMD1B or two copies of SMD1A is necessary for the plant to survive. {ECO:0000305|PubMed:26842463}. R-ATH-72163;R-ATH-72165; 12750,12600 Small nuclear ribonucleoprotein SmD1b (AtSmD1-b),Small nuclear ribonucleoprotein SmD1a (AtSmD1-a) intracellular ribonucleoprotein complex [GO:0030529]; membrane [GO:0016020]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; posttranscriptional gene silencing by RNA [GO:0035194]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380]; spliceosomal snRNP assembly [GO:0000387],catalytic step 2 spliceosome [GO:0071013]; commitment complex [GO:0000243]; cytosol [GO:0005829]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleus [GO:0005634]; pICln-Sm protein complex [GO:0034715]; precatalytic spliceosome [GO:0071011]; prespliceosome [GO:0071010]; SMN-Sm protein complex [GO:0034719]; spliceosomal tri-snRNP complex [GO:0097526]; U1 snRNP [GO:0005685]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U4 snRNP [GO:0005687]; U5 snRNP [GO:0005682]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; posttranscriptional gene silencing by RNA [GO:0035194]; spliceosomal complex assembly [GO:0000245]; spliceosomal snRNP assembly [GO:0000387] locus:2140240;,locus:2091102; AT4G02840,AT3G07590 Small nuclear ribonucleoprotein Os02g0586500 protein (Putative small nuclear ribonucleoprotein D1 polypeptide 16kDa snRNP core protein D1 Sm-D autoantigen) Q6YY16 Q6YY16_ORYSJ Os02g0586500 Os02g0586500 OsJ_07305 OSJNBb0056I22.33-1 OSNPB_020586500 ENOG411E4PZ RPL36C,RPL36B,RPL36A Q9LZ57,Q9M352,O80929 RL363_ARATH,RL362_ARATH,RL361_ARATH 60S ribosomal protein L36-3,60S ribosomal protein L36-2,60S ribosomal protein L36-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 12190,12676,12736 60S ribosomal protein L36-3,60S ribosomal protein L36-2,60S ribosomal protein L36-1 cytosolic large ribosomal subunit [GO:0022625]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256] locus:2181758;,locus:2084395;,locus:2040756; AT5G02450,AT3G53740,AT2G37600 60S ribosomal protein L36 60S ribosomal protein L36,Os05g0459900 protein,Os01g0840700 protein (Fragment) Q6L510,A0A0P0WNG4,A0A0P0VAC8 Q6L510_ORYSJ,A0A0P0WNG4_ORYSJ,A0A0P0VAC8_ORYSJ Os05g0459900 OJ1281_H05.4 OsJ_18810 OSNPB_050459900,Os05g0459900 OSNPB_050459900,Os01g0840700 OSNPB_010840700 ENOG411E4PY GRXC2 Q9FNE2,B3H604 GRXC2_ARATH,B3H604_ARATH Glutaredoxin-C2 (AtGrxC2),Glutaredoxin family protein FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 11756,14908 Glutaredoxin-C2 (AtGrxC2),Glutaredoxin family protein cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454],apoplast [GO:0048046]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2170593; AT5G40370 Glutaredoxin Glutaredoxin-C6 (Glutaredoxin-C2 homolog 1),Glutaredoxin-C4, chloroplastic (Glutaredoxin-C2 homolog 2),Os02g0618100 protein (Fragment) P55142,Q6K953,A0A0P0VLU3 GRXC6_ORYSJ,GRXC4_ORYSJ,A0A0P0VLU3_ORYSJ GRXC6 RASC8 Os04g0508300 LOC_Os04g42930 OsJ_15409 OSJNBa0043L24.17,GRXC4 Os02g0618100 LOC_Os02g40500 OJ1014_H03.21 OJ1212_C01.7,Os02g0618100 OSNPB_020618100 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. Possesses thioltransferase, dehydroascorbate reductase and GSH-dependent peroxidase activities in vitro. {ECO:0000269|PubMed:12207894, ECO:0000269|PubMed:8287970}.,FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. MISCELLANEOUS: The mutagenesis of Cys-26 into a serine residue does not affect thioltransferase and GSH-dependent peroxidase activities. ENOG411E4PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance response protein NA NA NA NA NA NA NA ENOG411E4PC SUFE2 Q9FXE3 SUFE2_ARATH SufE-like protein 2, chloroplastic (Protein SULFUR E 2) FUNCTION: Participates in cysteine desulfurization mediated by NFS2. Can activate the cysteine desulfurase activity of NFS2 in vitro. Cysteine desulfurization mobilizes sulfur from L-cysteine to yield L-alanine and supplies the inorganic sulfur for iron-sulfur (Fe-S) cluster formation. {ECO:0000269|PubMed:17452319}. PATHWAY: Cofactor biosynthesis; iron-sulfur cluster biosynthesis. 28968 SufE-like protein 2, chloroplastic (Protein SULFUR E 2) chloroplast [GO:0009507]; enzyme activator activity [GO:0008047]; iron-sulfur cluster assembly [GO:0016226]; positive regulation of sulfur metabolic process [GO:0051176] TISSUE SPECIFICITY: Highly expressed in flowers and pollen, and at low levels in roots, leaves and stems. {ECO:0000269|PubMed:17452319}. locus:2824065; AT1G67810 Fe-S metabolism associated domain NA NA NA NA NA NA NA ENOG411E4PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os03g0189900 protein (Os03g0190000 protein) C7IZY4 C7IZY4_ORYSJ Os03g0189900 Os03g0190000 OSNPB_030190000 ENOG411E4PA ATL71 Q9FG21 ATL71_ARATH Putative RING-H2 finger protein ATL71 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL71) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 22031 Putative RING-H2 finger protein ATL71 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL71) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2144088; AT5G06490 finger protein Os03g0788100 protein (Putative C3HC4 type RING zinc finger protein) (Zinc finger, C3HC4 type family protein, expressed),C3HC4-type RING zinc finger protein-like (Os07g0159600 protein) Q6F3C6,Q8H562 Q6F3C6_ORYSJ,Q8H562_ORYSJ Os03g0788100 LOC_Os03g57410 Os03g0788100 OSJNBb0024J04.16 OSNPB_030788100,OJ1714_H10.111 Os07g0159600 OSNPB_070159600 P0455F03.42 ENOG411E4PG Q9LSH0,Q8LDS7 Q9LSH0_ARATH,Q8LDS7_ARATH B-cell receptor-associated-like protein (Uncharacterized protein At3g17780),At1g48440 (B-cell receptor-associated 31-like protein) (Expressed protein) 14960,14978 B-cell receptor-associated-like protein (Uncharacterized protein At3g17780),At1g48440 (B-cell receptor-associated 31-like protein) (Expressed protein) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; protein localization to endoplasmic reticulum exit site [GO:0070973],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; protein localization to endoplasmic reticulum exit site [GO:0070973] locus:2089789;,locus:2198040; AT3G17780,AT1G48440 NA Expressed protein (Os03g0240700 protein) (cDNA clone:J023112A13, full insert sequence) Q10PB0 Q10PB0_ORYSJ LOC_Os03g13750 Os03g0240700 OSNPB_030240700 ENOG411E4PF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase family protein, expressed (Os03g0659300 protein) (cDNA, clone: J065130F16, full insert sequence) Q10FQ7 Q10FQ7_ORYSJ LOC_Os03g45720 Os03g0659300 OSNPB_030659300 ENOG411E4PE WRKY13 Q9SVB7 WRK13_ARATH Probable WRKY transcription factor 13 (WRKY DNA-binding protein 13) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 34204 Probable WRKY transcription factor 13 (WRKY DNA-binding protein 13) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; positive regulation of sclerenchyma cell differentiation [GO:1904369]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of lignin biosynthetic process [GO:1901141]; transcription, DNA-templated [GO:0006351] locus:2122496; AT4G39410 Transcription factor Os01g0182700 protein (cDNA clone:002-150-F11, full insert sequence) B7F1L8 B7F1L8_ORYSJ Os01g0182700 OsJ_00642 OSNPB_010182700 ENOG411E4PD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0496000 protein (cDNA clone:J033043H15, full insert sequence) Q65X68 Q65X68_ORYSJ Os05g0496000 OJ1579_G03.15 OsJ_19056 OSNPB_050496000 ENOG411E4PK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH-ubiquinone reductase complex 1 MLRQ subunit Os07g0274400 protein (Putative B12D protein) Q6YU38 Q6YU38_ORYSJ Os07g0274400 Os07g0274400 B1029H08.17 OsJ_23823 OSJNBb0032G22.32 OSNPB_070274400 ENOG411E4PJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport Os05g0202300 protein (cDNA clone:002-155-F09, full insert sequence),Os01g0199300 protein Q6L4Q0,Q4VWZ2 Q6L4Q0_ORYSJ,Q4VWZ2_ORYSJ Os05g0202300 OSNPB_050202300 P0708D12.12,B1046G12.31 Os01g0199300 OSNPB_010199300 ENOG411E4PI Q66GR4,A8MQI2 Q66GR4_ARATH,A8MQI2_ARATH At4g35070 (SBP (S-ribonuclease binding protein) family protein) (Uncharacterized protein At4g35070),SBP (S-ribonuclease binding protein) family protein 30250,24144 At4g35070 (SBP (S-ribonuclease binding protein) family protein) (Uncharacterized protein At4g35070),SBP (S-ribonuclease binding protein) family protein locus:2131571; AT4G35070 BEST Arabidopsis thaliana protein match is SBP1 (s-ribonuclease binding protein 1) NA NA NA NA NA NA NA ENOG411E4PH Q8W455 Q8W455_ARATH Expressed protein (Uncharacterized protein At2g36835/T1J8.24) 13387 Expressed protein (Uncharacterized protein At2g36835/T1J8.24) chloroplast envelope [GO:0009941] locus:505006301; AT2G36835 NA Os01g0776700 protein Q8LJ42 Q8LJ42_ORYSJ P0413G02.21 Os01g0776700 OSNPB_010776700 ENOG411E4PN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0175300 protein Q0D896 Q0D896_ORYSJ Os07g0175300 Os07g0175300 OSNPB_070175300 ENOG411E4PM ELP Q9SXE6,O65369 Q9SXE6_ARATH,O65369_ARATH At1g62510 (At1g62510 protein) (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Similar to 14KD proline-rich protein DC2.15) (Similar to 14KD proline-rich protein DC2.15 sp|P14009) (T3P18.7),At1g12090/T28K15.14 (Extensin-like protein) (F12F1.3 protein) (Putative pEARLI 1) 15619,13913 At1g62510 (At1g62510 protein) (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Similar to 14KD proline-rich protein DC2.15) (Similar to 14KD proline-rich protein DC2.15 sp|P14009) (T3P18.7),At1g12090/T28K15.14 (Extensin-like protein) (F12F1.3 protein) (Putative pEARLI 1) locus:2203886;,locus:2008880; AT1G62510,AT1G12090 14 kDa proline-rich protein DC2.15-like NA NA NA NA NA NA NA ENOG411EK2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LisH Os01g0607400 protein (Putative LEUNIG),LEUNIG-like (Os01g0607400 protein),Os01g0607600 protein Q5ZBP7,Q5ZBP6,A0A0P0V520 Q5ZBP7_ORYSJ,Q5ZBP6_ORYSJ,A0A0P0V520_ORYSJ P0704D04.24-1 Os01g0607400 OSJNBa0090K04.16-1 OSNPB_010607400,P0704D04.24-2 Os01g0607400 OSJNBa0090K04.16-2 OSNPB_010607400,Os01g0607600 OSNPB_010607600 ENOG411DYE7 Q9M0I7 Q9M0I7_ARATH At4g28200 (U3 small nucleolar RNA-associated-like protein) (Uncharacterized protein AT4g28200) R-ATH-6791226; 74663 At4g28200 (U3 small nucleolar RNA-associated-like protein) (Uncharacterized protein AT4g28200) Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2123678; AT4G28200 U3 small nucleolar RNA-associated protein 6 Os02g0103900 protein (Putative hepatocellular carcinoma-associated antigen 66) (cDNA clone:J023057B08, full insert sequence),Os02g0103900 protein (Fragment) Q6YPH2,A0A0N7KEI9 Q6YPH2_ORYSJ,A0A0N7KEI9_ORYSJ OJA1212_C06.1 P0402F12_51C04.1 Os02g0103900 OSNPB_020103900,Os02g0103900 OSNPB_020103900 ENOG411DZCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18),Auxin-responsive protein IAA6 (Indoleacetic acid-induced protein 6) Q5W670,Q8LQ74 IAA18_ORYSJ,IAA6_ORYSJ IAA18 Os05g0523300 LOC_Os05g44810 OsJ_19257 OSJNBa0075A10.11,IAA6 Os01g0741900 LOC_Os01g53880 OsJ_03405 P0439E07.11 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411DZCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3411) Chloroplast lumen common protein family-like protein (Os07g0240300 protein) (cDNA clone:J013093D20, full insert sequence) (cDNA clone:J013168D12, full insert sequence) Q7F0B4 Q7F0B4_ORYSJ P0523A04.122 Os07g0240300 OSNPB_070240300 ENOG411DZCX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os01g0871900 protein,Os01g0872100 protein,Os01g0872000 protein (Putative peptide transporter) (cDNA clone:J033088C23, full insert sequence),Os10g0148400 protein (POT family protein, expressed) (Putative peptide transporter),Os01g0871800 protein (Peptide transporter-like protein) (cDNA clone:J013000B18, full insert sequence) (cDNA clone:J013023O17, full insert sequence) (cDNA clone:J013095A19, full insert sequence),Os01g0872300 protein,Os02g0519401 protein (Fragment),Os01g0872400 protein (Fragment),Os02g0757400 protein,Os01g0871766 protein,Os01g0871700 protein,Os01g0872450 protein (Fragment) Q0JHC3,Q0JHC1,Q5N734,Q7XGT7,Q5N735,A0A0P0VAW9,A0A0P0VJK5,A0A0P0VAY0,A0A0N7KG46,A0A0P0VB13,A0A0P0VAX0,A0A0P0VAY5 Q0JHC3_ORYSJ,Q0JHC1_ORYSJ,Q5N734_ORYSJ,Q7XGT7_ORYSJ,Q5N735_ORYSJ,A0A0P0VAW9_ORYSJ,A0A0P0VJK5_ORYSJ,A0A0P0VAY0_ORYSJ,A0A0N7KG46_ORYSJ,A0A0P0VB13_ORYSJ,A0A0P0VAX0_ORYSJ,A0A0P0VAY5_ORYSJ Os01g0871900 Os01g0871900 OSNPB_010871900,Os01g0872100 Os01g0872100 OsJ_04248 OSNPB_010872100,Os01g0872000 Os01g0872000 OsJ_04247 OSNPB_010872000 P0039A07.34 P0491F11.8,LOC_Os10g05780 Os10g0148400 OSJNBb0016M10.9 OSNPB_100148400,P0491F11.6-1 P0039A07.32-1 Os01g0871800 OSNPB_010871800,Os01g0872300 OSNPB_010872300,Os02g0519401 OSNPB_020519401,Os01g0872400 OSNPB_010872400,Os02g0757400 OSNPB_020757400,Os01g0871766 OSNPB_010871766,Os01g0871700 OSNPB_010871700,Os01g0872450 OSNPB_010872450 ENOG411DZCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DZCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: family with sequence similarity 213 member NA NA NA NA NA NA NA ENOG411DZCR Q9SKT4,A0A1P8B1B9,A0A1P8B1B4,F4IFK0,F4IFJ9 Q9SKT4_ARATH,A0A1P8B1B9_ARATH,A0A1P8B1B4_ARATH,F4IFK0_ARATH,F4IFJ9_ARATH Expressed protein (Folic acid binding / transferase) (Uncharacterized protein At2g20830),Folic acid binding / transferase 32137,40574,32800,47376,37303 Expressed protein (Folic acid binding / transferase) (Uncharacterized protein At2g20830),Folic acid binding / transferase folic acid binding [GO:0005542]; transferase activity [GO:0016740]; metabolic process [GO:0008152] locus:2051415; AT2G20830 Formiminotransferase domain N-terminal subdomain Os06g0128000 protein A0A0P0WRU8 A0A0P0WRU8_ORYSJ Os06g0128000 OSNPB_060128000 ENOG411DZCQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor accessory protein Os01g0728250 protein,Os01g0728200 protein (Fragment) Q5JNN4,A0A0P0V7R5 Q5JNN4_ORYSJ,A0A0P0V7R5_ORYSJ Os01g0728250 OSNPB_010728250 P0456A01.14,Os01g0728200 OSNPB_010728200 ENOG411DZCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein (DUF2146) Os02g0823800 protein,Os02g0823800 protein (Fragment) Q6K9X0,A0A0P0VRI4 Q6K9X0_ORYSJ,A0A0P0VRI4_ORYSJ Os02g0823800 Os02g0823800 OJ1063_D06.4 OJ1136_C04.12 OSNPB_020823800,Os02g0823800 OSNPB_020823800 ENOG411DZCJ RKS1 Q9LPZ3,Q9ZT07,A0A1P8AMT2,A0A1P8ATF5,A0A1P8ATC6,A0A1P8AMR8,A0A1P8AMR1 Y1141_ARATH,RKS1_ARATH,A0A1P8AMT2_ARATH,A0A1P8ATF5_ARATH,A0A1P8ATC6_ARATH,A0A1P8AMR8_ARATH,A0A1P8AMR1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 (EC 2.7.11.1) (Receptor-like protein kinase 1),S-locus lectin protein kinase family protein,G-type lectin S-receptor-like Serine/Threonine-kinase 2.7.11.1 95862,94891,92862,91455,85837,96775,82713 G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 (EC 2.7.11.1) (Receptor-like protein kinase 1),S-locus lectin protein kinase family protein,G-type lectin S-receptor-like Serine/Threonine-kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] locus:2200136; AT1G11410,AT1G11340 serine threonine-protein kinase Os04g0633200 protein,Os04g0632901 protein A0A0P0WF77,A0A0P0WF90 A0A0P0WF77_ORYSJ,A0A0P0WF90_ORYSJ Os04g0633200 OSNPB_040633200,Os04g0632901 OSNPB_040632901 ENOG411DZC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os01g0875000 protein (p0648C09.16 protein),Os08g0104800 protein (cDNA clone:J033037G15, full insert sequence),Os11g0663850 protein,Os02g0552200 protein Q8RYY4,Q0J8M0,A3CE96,A0A0P0VK77 Q8RYY4_ORYSJ,Q0J8M0_ORYSJ,A3CE96_ORYSJ,A0A0P0VK77_ORYSJ P0648C09.16 Os01g0875000 OsJ_04264 OSNPB_010875000 P0698A10.17,Os08g0104800 Os08g0104800 OSNPB_080104800,Os11g0663850 OsJ_34964 OSNPB_110663850,Os02g0552200 OSNPB_020552200 ENOG411DZC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Bifunctional enzyme that catalyzes the enolization of 23-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P) which is then dephosphorylated to form the acireductone 12-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) (By similarity) NA NA NA NA NA NA NA ENOG411DZC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0768700 protein A0A0P0VQF4 A0A0P0VQF4_ORYSJ Os02g0768700 OSNPB_020768700 ENOG411DZC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain FAR1 family protein, expressed (Os03g0255400 protein) (cDNA clone:J013072M14, full insert sequence) Q10NX4 Q10NX4_ORYSJ LOC_Os03g15040 Os03g0255400 OsJ_10174 OSNPB_030255400 ENOG411DZC2 MYOB5,MYOB6 Q9LMC8,F4HVS6 MYOB5_ARATH,MYOB6_ARATH Probable myosin-binding protein 5,Probable myosin-binding protein 6 FUNCTION: Probable membrane-anchored myosin receptors. {ECO:0000250|UniProtKB:F4HXQ7}. 59878,61608 Probable myosin-binding protein 5,Probable myosin-binding protein 6 integral component of membrane [GO:0016021] locus:2011206;,locus:2027217; AT1G18990,AT1G74830 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411DZC0 PLT1,PLT2 Q9XIH7,Q9XIH6 PLT1_ARATH,PLT2_ARATH Putative polyol transporter 1,Putative polyol transporter 2 FUNCTION: Plasma membrane sugar-proton symporter. {ECO:0000250}. 54758,54933 Putative polyol transporter 1,Putative polyol transporter 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] locus:2052956;,locus:2052971; AT2G16120,AT2G16130 symporter activity NA NA NA NA NA NA NA ENOG411DZFX Q9M2U3 ALPL_ARATH Protein ALP1-like (EC 3.1.-.-) FUNCTION: Transposase-derived protein that may have nuclease activity. {ECO:0000305}. 3.1.-.- 45467 Protein ALP1-like (EC 3.1.-.-) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518] locus:2099901; AT3G55350 Plant transposon protein Expressed protein (Os11g0702700 protein) (cDNA clone:002-108-F06, full insert sequence) Q53NM6 Q53NM6_ORYSJ LOC_Os11g47650 Os11g0702700 OSNPB_110702700 ENOG411E674 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome c oxidase copper Copper chaperone COX17-1-like protein (Os09g0420700 protein) Q69Q87 Q69Q87_ORYSJ Os09g0420700 OsJ_29395 OSNPB_090420700 P0668D04.31 ENOG411E675 atpH P56760 ATPH_ARATH ATP synthase subunit c, chloroplastic (ATP synthase F(0) sector subunit c) (ATPase subunit III) (F-type ATPase subunit c) (F-ATPase subunit c) (Lipid-binding protein) FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. {ECO:0000255|HAMAP-Rule:MF_01396}.; FUNCTION: Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits. {ECO:0000255|HAMAP-Rule:MF_01396}. MISCELLANEOUS: In plastids the F-type ATPase is also known as CF(1)CF(0).; MISCELLANEOUS: Dicyclohexylcarbodiimide (DCDD) inhibits ATPase. 7976 ATP synthase subunit c, chloroplastic (ATP synthase F(0) sector subunit c) (ATPase subunit III) (F-type ATPase subunit c) (F-ATPase subunit c) (Lipid-binding protein) chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; proton-transporting ATP synthase complex, coupling factor F(o) [GO:0045263]; lipid binding [GO:0008289]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP synthesis coupled proton transport [GO:0015986] locus:504954638; ATCG00140 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel linked together by a central stalk and a peripheral stalk. During catalysis ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity) ATP synthase subunit c, chloroplastic (ATP synthase F(0) sector subunit c) (ATPase subunit III) (F-type ATPase subunit c) (F-ATPase subunit c) (Lipid-binding protein) P0C301 ATPH_ORYSJ atpH Nip042 FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. {ECO:0000255|HAMAP-Rule:MF_01396}.; FUNCTION: Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits. {ECO:0000255|HAMAP-Rule:MF_01396}. MISCELLANEOUS: In plastids the F-type ATPase is also known as CF(1)CF(0). ENOG411E676 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E677 HYH Q8W191,Q682B6,A8MS70 HYH_ARATH,Q682B6_ARATH,A8MS70_ARATH Transcription factor HY5-like (HY5 homolog) (bZIP transcription factor 64) (AtbZIP64),BZip transcription factor AtbZip64 (HY5-homolog),HY5-homolog Indistinguishable from the respective cop1 mutants when grown in darkness.,No suppression of the light-dependent cop1 phenotype where seedlings bleach and die when transferred from darkness to light. This is in contrast to the phenotype observed in the other two double mutants: cop1-4/hyh and cop1-6/hyh.,Suppression in a substantial number of seedlings of the light-dependent cop1 phenotype where seedlings bleach and die when transferred from darkness to light.,Blue-light-grown double-mutant seedlings have a longer hypocotyl than seedlings carrying the hyh or hy5 mutation alone.,Mutant produces significantly reduced levels of anthocyanins and is not responsive to cytokinins at all.,The double-mutant seedlings contains &,White-light-grown mutant seedlings are slightly paler than wild-type seedlings. No significant difference in chlorophyll content was observed but hyh seedlings accumulate slightly reduced levels of anthocyanin. Slightly pale green; Early flowering; Long hypocotyl under blue light-X. Deng-2002 FUNCTION: Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes. {ECO:0000269|PubMed:12023303}. 16899,13673,15180 Transcription factor HY5-like (HY5 homolog) (bZIP transcription factor 64) (AtbZIP64),BZip transcription factor AtbZip64 (HY5-homolog),HY5-homolog nucleus [GO:0005634]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; response to karrikin [GO:0080167]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:1005716533; AT3G17609 Transcription factor NA NA NA NA NA NA NA ENOG411E670 psbH P56780 PSBH_ARATH Photosystem II reaction center protein H (PSII-H) (Photosystem II 10 kDa phosphoprotein) FUNCTION: One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00752}. MetaCyc:ATCG00710-MONOMER; 7702 Photosystem II reaction center protein H (PSII-H) (Photosystem II 10 kDa phosphoprotein) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; phosphate ion binding [GO:0042301]; photosynthesis [GO:0015979]; protein stabilization [GO:0050821] locus:504954694; ATCG00710 photosystem II reaction center protein H Photosystem II reaction center protein H (PSII-H) (Photosystem II 10 kDa phosphoprotein) P0C422 PSBH_ORYSJ psbH LOC_Osp1g00620 Nip093 FUNCTION: One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00752}. ENOG411E671 Q9SKA5 Q9SKA5_ARATH At1g22630/F12K8_2 (F12K8.2 protein) (SSUH2-like protein) 11879 At1g22630/F12K8_2 (F12K8.2 protein) (SSUH2-like protein) chloroplast [GO:0009507]; heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] locus:2009482; AT1G22630 NA Os05g0105800 protein (Fragment) A0A0P0WH29 A0A0P0WH29_ORYSJ Os05g0105800 OSNPB_050105800 ENOG411E672 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0199000 protein (Os07g0200500 protein),Os04g0614200 protein,Os04g0614237 protein A0A0P0X480,A0A0P0WEU3,A0A0P0WEW0 A0A0P0X480_ORYSJ,A0A0P0WEU3_ORYSJ,A0A0P0WEW0_ORYSJ Os07g0199000 Os07g0200500 OSNPB_070199000 OSNPB_070200500,Os04g0614200 OSNPB_040614200,Os04g0614237 OSNPB_040614237 ENOG411E673 T20N10_70 Q9LXS9,A0A1I9LN14,A0A1I9LN13,F4J5Z1 Q9LXS9_ARATH,A0A1I9LN14_ARATH,A0A1I9LN13_ARATH,F4J5Z1_ARATH RING/U-box superfamily protein (Uncharacterized protein T20N10_70),RING/U-box superfamily protein 27204,29391,35697,30315 RING/U-box superfamily protein (Uncharacterized protein T20N10_70),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2099069; AT3G58720 Zinc finger C3HC4 type (RING finger) Os09g0344900 protein (cDNA clone:006-305-B01, full insert sequence),Os09g0344900 protein (Fragment) Q6EQH4,A0A0P0XKF9 Q6EQH4_ORYSJ,A0A0P0XKF9_ORYSJ Os09g0344900 OsJ_28980 OSJNBb0085I16.12-1 OSNPB_090344900,Os09g0344900 OSNPB_090344900 ENOG411E678 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA One of the two reaction center proteins of photosystem II (PSII) D2 is needed for assembly of a stable PSII complex (By similarity) NA NA NA NA NA NA NA ENOG411E679 Q84K46 Q84K46_ARATH At1g27330 (Ribosome associated membrane protein RAMP4) (Uncharacterized protein At1g27330) (Uncharacterized protein At1g27350) R-ATH-381038; 7523 At1g27330 (Ribosome associated membrane protein RAMP4) (Uncharacterized protein At1g27330) (Uncharacterized protein At1g27350) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; endoplasmic reticulum unfolded protein response [GO:0030968]; protein glycosylation [GO:0006486]; response to oxidative stress [GO:0006979] locus:2015969;locus:2015984; AT1G27330AT1G27350; endoplasmic reticulum protein Os12g0514100 protein (cDNA clone:J023085O07, full insert sequence),Os11g0637600 protein (Fragment),Os11g0637501 protein Q0IN17,A0A0P0Y5D6,A0A0P0Y530 Q0IN17_ORYSJ,A0A0P0Y5D6_ORYSJ,A0A0P0Y530_ORYSJ Os12g0514100 Os12g0514100 OsJ_36275 OSNPB_120514100,Os11g0637600 OSNPB_110637600,Os11g0637501 OSNPB_110637501 ENOG411E67D EC1.1 Q9SRD8 EC11_ARATH Egg cell-secreted protein 1.1 FUNCTION: Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival. {ECO:0000269|PubMed:23180860}. 16998 Egg cell-secreted protein 1.1 cytoplasmic vesicle [GO:0031410]; extracellular region [GO:0005576]; intracellular [GO:0005622]; vesicle [GO:0031982]; double fertilization forming a zygote and endosperm [GO:0009567]; regulation of double fertilization forming a zygote and endosperm [GO:0080155]; regulation of protein localization to cell surface [GO:2000008]; single fertilization [GO:0007338]; sperm capacitation [GO:0048240] DEVELOPMENTAL STAGE: Confined to the egg cell before fertilization, but disappears upon gamete fusion. Also present in zygotes and early embryos. {ECO:0000269|PubMed:23180860}. TISSUE SPECIFICITY: Restricted to female reproductive tissues, specifically accumulating in storage vesicles of the unfertilized egg cell. {ECO:0000269|PubMed:23180860}. locus:2030136; AT1G76750 Pfam:DUF1278 NA NA NA NA NA NA NA ENOG411E67E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E67F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CASP-like protein NA NA NA NA NA NA NA ENOG411E67G EPF1 Q8S8I4 EPF1_ARATH Protein EPIDERMAL PATTERNING FACTOR 1 [Cleaved into: MEPF1] DISRUPTION PHENOTYPE: Increased stomatal density and violation of the one-cell-spacing rule (clustering of stomata). {ECO:0000269|PubMed:17639078, ECO:0000269|PubMed:19435754}. FUNCTION: Controls stomatal patterning. Regulates asymmetric cell division during guard cell differentiation. Mediates stomatal development inhibition. Not cleaved by the protease CRSP (AC Q9LNU1) (PubMed:25043023). MEPF1: mobile signal controlling stomatal development in a non-cell-autonomous manner (PubMed:22241782). Uses ERL1 as major receptor (PubMed:22241782). May act by competing with somatogen (AC Q9SV72) for the same receptor, TMM (AC Q9SSD1) (PubMed:22027592). {ECO:0000269|PubMed:17639078, ECO:0000269|PubMed:19435754, ECO:0000269|PubMed:22241782, ECO:0000269|PubMed:25043023, ECO:0000303|PubMed:22027592}. 11444 Protein EPIDERMAL PATTERNING FACTOR 1 [Cleaved into: MEPF1] extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; negative regulation of stomatal complex development [GO:2000122]; stomatal complex development [GO:0010374]; stomatal complex patterning [GO:0010375] TISSUE SPECIFICITY: Expressed in shoots, but not in roots. Mostly localized in developing leaves, specifically in meristemoids, guard mother cells (GMCs), and young guard cells. {ECO:0000269|PubMed:17639078, ECO:0000269|PubMed:19435754}. locus:3436392; AT2G20875 epidermal patterning factor NA NA NA NA NA NA NA ENOG411E67A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BBOX NA NA NA NA NA NA NA ENOG411E67B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Proline-rich protein Os06g0168700 protein (Putative prolin rich protein) (cDNA clone:J033033M04, full insert sequence) (cDNA clone:J033134F12, full insert sequence) Q5VRF4 Q5VRF4_ORYSJ Os06g0168700 Os06g0168700 OSJNBa0033B09.20 OSNPB_060168700 P0680A03.41 ENOG411E67C ERF110 Q70II3,G8IQH2 EF110_ARATH,G8IQH2_ARATH Ethylene-responsive transcription factor ERF110,Ethylene response factor 110 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 24257,25168 Ethylene-responsive transcription factor ERF110,Ethylene response factor 110 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2170101; AT5G50080 AP2 OSJNBa0042L16.9 protein (Os04g0429050 protein) Q7XUT6 Q7XUT6_ORYSJ OSJNBa0042L16.9 Os04g0429050 OSNPB_040429050 ENOG411E67M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0230600 protein A0A0P0X455 A0A0P0X455_ORYSJ Os07g0230600 OSNPB_070230600 ENOG411E67N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA jasmonate-induced protein OSJNBa0024J22.14 protein (Os04g0308400 protein) (Os04g0310200 protein) Q7XRN4 Q7XRN4_ORYSJ OSJNBa0024J22.14 Os04g0308400 Os04g0310200 OSNPB_040308400 OSNPB_040310200 ENOG411E67H Q94LA6 Q94LA6_ARATH At1g44414 (Uncharacterized protein T18F15.8) (Zinc-ribbon domain protein) 11442 At1g44414 (Uncharacterized protein T18F15.8) (Zinc-ribbon domain protein) locus:2823681; AT1G44414 NA Os05g0435400 protein (cDNA clone:002-137-D03, full insert sequence) Q6I5L2 Q6I5L2_ORYSJ Os05g0435400 OsJ_18661 OSJNBb0088F07.7 OSNPB_050435400 ENOG411E67I Q8GW89 Q8GW89_ARATH PyrD (Uncharacterized protein At1g71865) 10906 PyrD (Uncharacterized protein At1g71865) locus:1005716766; AT1G71865 NA Os01g0871350 protein (Fragment) A0A0P0VAZ9 A0A0P0VAZ9_ORYSJ Os01g0871350 OSNPB_010871350 ENOG411E67J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0583100 protein (Protease inhibitor/seed storage/LTP family protein) Q2R218 Q2R218_ORYSJ Os11g0583100 LOC_Os11g37320 OSNPB_110583100 ENOG411E67K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Pollen Ole e I allergen and extensin family protein precursor expressed Expressed protein (Os10g0208600 protein) (cDNA clone:J013155I02, full insert sequence),Expressed protein (Os10g0206500 protein) Q109X1,Q109X3 Q109X1_ORYSJ,Q109X3_ORYSJ Os10g0208600 LOC_Os10g14194 Os10g0208600 OSNPB_100208600,LOC_Os10g13914 Os10g0206500 OsJ_31019 OSNPB_100206500 ENOG411E67T Q9FJ33,F4JZY4 Q9FJ33_ARATH,F4JZY4_ARATH AT5g41810/K16L22_9 (Avr9/Cf-9 rapidly elicited protein),Avr9/Cf-9 rapidly elicited protein 32181,31103 AT5g41810/K16L22_9 (Avr9/Cf-9 rapidly elicited protein),Avr9/Cf-9 rapidly elicited protein locus:2153005; AT5G41810 NA NA NA NA NA NA NA NA ENOG411E67U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcriptional regulator SUPERMAN-like NA NA NA NA NA NA NA ENOG411E67V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E67W NEET Q9FLI7 NEET_ARATH CDGSH iron-sulfur domain-containing protein NEET (At-NEET) DISRUPTION PHENOTYPE: Late bolting, early senescence and increased tolerance to abiotic stress. {ECO:0000269|PubMed:22562611}. FUNCTION: Plays a important role in plant development, senescence, reactive oxygen homeostasis, and iron metabolism. Acts as an iron-sulfur transfer protein. {ECO:0000269|PubMed:22562611}. 11626 CDGSH iron-sulfur domain-containing protein NEET (At-NEET) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; metal ion binding [GO:0046872]; iron ion homeostasis [GO:0055072]; leaf senescence [GO:0010150]; reactive oxygen species metabolic process [GO:0072593] locus:2165336; AT5G51720 domain-containing protein Os07g0467200 protein Q0D6L9 Q0D6L9_ORYSJ Os07g0467200 Os07g0467200 OsJ_24173 OSNPB_070467200 ENOG411E67P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0126800 protein Q0DL29 Q0DL29_ORYSJ Os05g0126800 Os05g0126800 OsJ_16978 OSNPB_050126800 ENOG411E67Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein SPIRAL1-like 4 Q7XQ83 SP1L4_ORYSJ Os04g0578300 LOC_Os04g48870 OsJ_15879 OSJNBa0011J08.6 FUNCTION: Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth. {ECO:0000250}. ENOG411E67R T25B15_120 Q94EI2,Q8GXG0,Q9FT47 Q94EI2_ARATH,Q8GXG0_ARATH,Q9FT47_ARATH AT5g08540/MAH20_10 (D111/G-patch domain-containing protein),D111/G-patch domain-containing protein (Uncharacterized protein At5g08535/At5g08540),D111/G-patch domain-containing protein (Uncharacterized protein T25B15_120) 13029,15643,20351 AT5g08540/MAH20_10 (D111/G-patch domain-containing protein),D111/G-patch domain-containing protein (Uncharacterized protein At5g08535/At5g08540),D111/G-patch domain-containing protein (Uncharacterized protein T25B15_120) nucleic acid binding [GO:0003676] locus:505006587;,locus:2100549; AT5G08535,AT3G52350 D111 G-patch domain-containing protein NA NA NA NA NA NA NA ENOG411E67S T24C20_20 Q42338 Q42338_ARATH AT3G48140 protein (B12D protein) (B12D-like protein) (HVB12D homologue) 10020 AT3G48140 protein (B12D protein) (B12D-like protein) (HVB12D homologue) integral component of membrane [GO:0016021]; peroxisome [GO:0005777] locus:2100484; AT3G48140 B12d protein G-box binding protein (G-box binding protein-like) (Os06g0246000 protein) (cDNA clone:002-156-H09, full insert sequence) (cDNA clone:J013021L07, full insert sequence) (cDNA clone:J033037I06, full insert sequence),Os07g0274700 protein (Putative B12D protein) (cDNA, clone: J100067M12, full insert sequence) Q654W0,Q6YU35 Q654W0_ORYSJ,Q6YU35_ORYSJ Os06g0246000 Os06g0246000 OJ1136_C11.3 OsJ_20800 OSNPB_060246000,Os07g0274700 B1029H08.20 OsJ_23824 OSJNBb0032G22.35 OSNPB_070274700 ENOG411E67X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0595300 protein Q6ZI57 Q6ZI57_ORYSJ OJ1126_D09.25 Os02g0595300 OSNPB_020595300 ENOG411E67Y ATL79 Q9FGJ6 ATL79_ARATH RING-H2 finger protein ATL79 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL79) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 17959 RING-H2 finger protein ATL79 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL79) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2169063; AT5G47610 zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411E67Z T22N19_120 Q9LYQ9 Q9LYQ9_ARATH At5g13470 (Uncharacterized protein At5g13470) (Uncharacterized protein T22N19_120) 17430 At5g13470 (Uncharacterized protein At5g13470) (Uncharacterized protein T22N19_120) locus:2181645; AT5G13470 NA NA NA NA NA NA NA NA ENOG411E8YE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0273500 protein (cDNA clone:J013060C14, full insert sequence) Q6ATF5 Q6ATF5_ORYSJ Os05g0273500 OSJNBb0061M13.19 OSNPB_050273500 ENOG411E8YJ MDA7.2 Q9FKU6,Q9LHL1 Q9FKU6_ARATH,Q9LHL1_ARATH Serine-rich protein-like protein,At3g13227 (Serine-rich protein-like protein) (Uncharacterized protein At3g13227) 12221,12023 Serine-rich protein-like protein,At3g13227 (Serine-rich protein-like protein) (Uncharacterized protein At3g13227) locus:2161750;,locus:504955753; AT5G55980,AT3G13227 NA NA NA NA NA NA NA NA ENOG411EJK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein L34 NA NA NA NA NA NA NA ENOG411E8Y1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Indole-3-glycerol phosphate synthase NA NA NA NA NA NA NA ENOG411EJK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Y4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0287600 protein,Os06g0362200 protein,Os06g0475900 protein A0A0P0Y949,A0A0P0WWS1,A0A0P0WWQ2 A0A0P0Y949_ORYSJ,A0A0P0WWS1_ORYSJ,A0A0P0WWQ2_ORYSJ Os12g0287600 OSNPB_120287600,Os06g0362200 OSNPB_060362200,Os06g0475900 OSNPB_060475900 ENOG411E8Y9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0249100 protein Q654P8 Q654P8_ORYSJ Os06g0249100 OsJ_20821 OSJNBa0091G06.17 OSNPB_060249100 ENOG411EC7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EC7P STO9,SOT10 Q9FX55,O82330 SOT9_ARATH,SOT10_ARATH Cytosolic sulfotransferase 9 (AtSOT9) (EC 2.8.2.-) (Sulfotransferase 4c) (AtST4b),Cytosolic sulfotransferase 10 (AtSOT10) (EC 2.8.2.-) (Sulfotransferase 4a) (AtST4a) FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. No activity with brassinosteroids. {ECO:0000269|PubMed:17039368}.,FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of brassinosteroids, including castasterone, brassinolide, related 24-epimers, and the naturally occurring (22R, 23R)-28-homobrassinosteroids. No activity on phenolic acids, desulfo-glucosinolates, flavonoids, steroids, gibberellic acids, cytokinins, phenylpropanoids, hydroxyjasmonates and coumarins. {ECO:0000269|PubMed:17039368}. ARA:AT1G13430-MONOMER;,ARA:AT2G14920-MONOMER;MetaCyc:AT2G14920-MONOMER; R-ATH-156584; 2.8.2.- 40667,38924 Cytosolic sulfotransferase 9 (AtSOT9) (EC 2.8.2.-) (Sulfotransferase 4c) (AtST4b),Cytosolic sulfotransferase 10 (AtSOT10) (EC 2.8.2.-) (Sulfotransferase 4a) (AtST4a) cytoplasm [GO:0005737]; sulfotransferase activity [GO:0008146]; response to cytokinin [GO:0009735],cytoplasm [GO:0005737]; brassinosteroid sulfotransferase activity [GO:0080118]; brassinosteroid metabolic process [GO:0016131]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:17039368}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:17039368}. locus:2010027;,locus:2060505; AT1G13430,AT2G14920 sulfotransferase activity Sulfotransferase (EC 2.8.2.-) Q2R534 Q2R534_ORYSJ Os11g0450400 LOC_Os11g26390 OSNPB_110450400 ENOG411EC7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os05g0380800 protein Q6L4D5 Q6L4D5_ORYSJ Os05g0380800 OsJ_18356 OSJNBa0088M05.5 OSNPB_050380800 ENOG411EC7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphofructokinase Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha (PFP) (6-phosphofructokinase, pyrophosphate dependent) (PPi-PFK) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) A0A0P0XL64 A0A0P0XL64_ORYSJ Os09g0298100 PFP-ALPHA OSNPB_090298100 FUNCTION: Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. {ECO:0000256|HAMAP-Rule:MF_03185}. ENOG411EC7K EXPA24 Q9FL76 EXP24_ARATH Expansin-A24 (AtEXPA24) (Alpha-expansin-24) (At-EXP24) (AtEx24) (Ath-ExpAlpha-1.19) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 33775 Expansin-A24 (AtEXPA24) (Alpha-expansin-24) (At-EXP24) (AtEx24) (Ath-ExpAlpha-1.19) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] AT5G39310 Pollen allergen NA NA NA NA NA NA NA ENOG411EC7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os05g0124600 protein,Os05g0124800 protein,Os05g0124000 protein (Fragment) A0A0P0WHN4,A0A0P0WHE7,A0A0P0WHC2 A0A0P0WHN4_ORYSJ,A0A0P0WHE7_ORYSJ,A0A0P0WHC2_ORYSJ Os05g0124600 OSNPB_050124600,Os05g0124800 OSNPB_050124800,Os05g0124000 OSNPB_050124000 ENOG411EC7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EC7C Q9SZ92,A0A1P8B6C2,F4JKS6 CK3_ARATH,A0A1P8B6C2_ARATH,F4JKS6_ARATH Probable choline kinase 3 (EC 2.7.1.32),Protein kinase superfamily protein FUNCTION: Involved in phospholipid biosynthesis. Catalyzes the first step in phosphatidylcholine biosynthesis (By similarity). {ECO:0000250}. PATHWAY: Phospholipid metabolism; phosphatidylcholine biosynthesis; phosphocholine from choline: step 1/1. ARA:GQT-1965-MONOMER; R-ATH-1483191;R-ATH-1483213; 2.7.1.32 40351,24633,29237 Probable choline kinase 3 (EC 2.7.1.32),Protein kinase superfamily protein ATP binding [GO:0005524]; choline kinase activity [GO:0004103],kinase activity [GO:0016301],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2118450; AT4G09760 Choline/ethanolamine kinase NA NA NA NA NA NA NA ENOG411EC7B YUC7 O49312 YUC7_ARATH Probable indole-3-pyruvate monooxygenase YUCCA7 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA7) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with the other members of the YUCCA family. {ECO:0000269|PubMed:22109847}. FUNCTION: Involved in auxin biosynthesis. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in roots. {ECO:0000269|PubMed:22025721, ECO:0000269|PubMed:22109847}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. 1.14.13.168 48148 Probable indole-3-pyruvate monooxygenase YUCCA7 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA7) flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; indoleacetic acid biosynthetic process [GO:0009684]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in shoot apex regions and siliques, and at high levels in roots. Detected in flowers, stems and leaves. {ECO:0000269|PubMed:22109847}. locus:2046545; AT2G33230 Flavin-binding monooxygenase-like NA NA NA NA NA NA NA ENOG411EC7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EC79 XPO1B F4IZR5 XPO1B_ARATH Protein EXPORTIN 1B DISRUPTION PHENOTYPE: Gametophyte defective when both XPO1A and XPO1B are disrupted. Abnormal pollen germination and tube growth, impaired female gametophyte development and embryo lethal. {ECO:0000269|PubMed:18791220}. embryo lethal.,Female gametophytes do not complete all mitotic divisions and embryo sac development is defective. FUNCTION: Receptor for the leucine-rich nuclear export signal (NES). Binds cooperatively to the NES on its target protein and to the small GTPase Ran in its active GTP-bound form (By similarity). Required for the maternal-to-embryonic transition and during gametophyte development (PubMed:18791220). {ECO:0000250|UniProtKB:Q9SMV6, ECO:0000269|PubMed:18791220}. R-ATH-69273; 123193 Protein EXPORTIN 1B cytoplasm [GO:0005737]; nuclear membrane [GO:0031965]; nuclear pore [GO:0005643]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; nuclear export signal receptor activity [GO:0005049]; Ran GTPase binding [GO:0008536]; embryo sac development [GO:0009553]; mRNA transport [GO:0051028]; pollen development [GO:0009555]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; regulation of protein export from nucleus [GO:0046825]; ribosomal large subunit export from nucleus [GO:0000055]; ribosomal small subunit export from nucleus [GO:0000056] TISSUE SPECIFICITY: Present in mature pollen grains, unpollinated pistils, and 2-week-old seedlings. {ECO:0000269|PubMed:18791220}. locus:2097750; AT3G03110 CRM1_C NA NA NA NA NA NA NA ENOG411EC78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPT NA NA NA NA NA NA NA ENOG411EC71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EC70 Q9LZS4 Q9LZS4_ARATH Protein kinase superfamily protein (Protein kinase-like protein) 102162 Protein kinase superfamily protein (Protein kinase-like protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556] locus:2144598; AT5G03640 kinase family NA NA NA NA NA NA NA ENOG411EC73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EC72 SETH6 O82253,F4IM56,A0A1P8B0G5,A0A1P8B0E1,F4IM54 SETH6_ARATH,F4IM56_ARATH,A0A1P8B0G5_ARATH,A0A1P8B0E1_ARATH,F4IM54_ARATH BTB/POZ domain-containing protein SETH6,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 70998,58264,49021,51869,73847 BTB/POZ domain-containing protein SETH6,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567],plasma membrane [GO:0005886] locus:2043388; AT2G47860 phototropic-responsive NPH3 family protein NA NA NA NA NA NA NA ENOG411EC75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411EC74 Q9C6S5,Q9C6S4 PHSB_ARATH,PHSA_ARATH Probable polyamine transporter At1g31830,Probable polyamine transporter At1g31820 FUNCTION: Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. {ECO:0000250}. 54828,52599 Probable polyamine transporter At1g31830,Probable polyamine transporter At1g31820 integral component of plasma membrane [GO:0005887]; antiporter activity [GO:0015297]; L-amino acid transmembrane transporter activity [GO:0015179]; polyamine transmembrane transporter activity [GO:0015203]; symporter activity [GO:0015293]; polyamine transport [GO:0015846] locus:2034451;,locus:2034461; AT1G31830,AT1G31820 amino acid NA NA NA NA NA NA NA ENOG411EC77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor-A protein 1 N-terminal domain Os05g0110950 protein A0A0P0WGZ9 A0A0P0WGZ9_ORYSJ Os05g0110950 OSNPB_050110950 ENOG411EC76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD dependent oxidoreductase NA NA NA NA NA NA NA ENOG411E94J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E94H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjC NA NA NA NA NA NA NA ENOG411E94N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0554400 protein,Os09g0351900 protein (Fragment),Os06g0635500 protein (Fragment),Os02g0487166 protein A0A0P0X7C1,A0A0P0XLZ8,A0A0N7KMG6,A0A0P0VJ50 A0A0P0X7C1_ORYSJ,A0A0P0XLZ8_ORYSJ,A0A0N7KMG6_ORYSJ,A0A0P0VJ50_ORYSJ Os07g0554400 OSNPB_070554400,Os09g0351900 OSNPB_090351900,Os06g0635500 OSNPB_060635500,Os02g0487166 OSNPB_020487166 ENOG411E94A MNL12.6 Q1PDN6,Q9LFC1,Q6DYD0,F4K7Y4,F4IYN1 Q1PDN6_ARATH,Q9LFC1_ARATH,Q6DYD0_ARATH,F4K7Y4_ARATH,F4IYN1_ARATH Uncharacterized protein,Uncharacterized protein F7J8_130 40567,56591,59729,50801,56558 Uncharacterized protein,Uncharacterized protein F7J8_130 locus:2150079;,locus:2095324;,locus:2150054; AT5G43240,AT5G01150,AT3G09140,AT5G01130 Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411E94F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E94Z LBD3 Q9SA51 LBD3_ARATH LOB domain-containing protein 3 (ASYMMETRIC LEAVES 2-like protein 9) (AS2-like protein 9) MISCELLANEOUS: Over-expression of LBD3 induces a dwarf phenotype. 18637 LOB domain-containing protein 3 (ASYMMETRIC LEAVES 2-like protein 9) (AS2-like protein 9) nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. At the bases of lateral organs formed from vegetative, inflorescence, and floral meristems. {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:17485849}. locus:2032931; AT1G16530 Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E94X Q9M8X0 Q9M8X0_ARATH Ankyrin repeat family protein (T6K12.24 protein) (Uncharacterized protein At3g04140) (Uncharacterized protein At3g04140; T6K12.24) 72356 Ankyrin repeat family protein (T6K12.24 protein) (Uncharacterized protein At3g04140) (Uncharacterized protein At3g04140; T6K12.24) locus:2103060; AT3G04140 Ankyrin repeat NA NA NA NA NA NA NA ENOG411E94R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411E94P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411E94Q LECRK17 Q9LSS0 LRK17_ARATH L-type lectin-domain containing receptor kinase I.7 (LecRK-I.7) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:25083911}. 2.7.11.1 73955 L-type lectin-domain containing receptor kinase I.7 (LecRK-I.7) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to oomycetes [GO:0002229] locus:2144015; AT5G60270 lectin protein kinase family NA NA NA NA NA NA NA ENOG411E94V TOR1L5 Q9XIE4 TORL5_ARATH TORTIFOLIA1-like protein 5 54048 TORTIFOLIA1-like protein 5 microtubule [GO:0005874]; microtubule binding [GO:0008017] locus:2025906; AT1G59850 NA NA NA NA NA NA NA NA ENOG411E94W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0133200 protein,Os02g0517900 protein (Fragment),Os06g0630000 protein,Os05g0471900 protein,Os03g0225750 protein A0A0N7KII6,A0A0P0VJL3,A0A0P0WYY7,A0A0P0WNJ5,A0A0N7KGV3 A0A0N7KII6_ORYSJ,A0A0P0VJL3_ORYSJ,A0A0P0WYY7_ORYSJ,A0A0P0WNJ5_ORYSJ,A0A0N7KGV3_ORYSJ Os04g0133200 OSNPB_040133200,Os02g0517900 OSNPB_020517900,Os06g0630000 OSNPB_060630000,Os05g0471900 OSNPB_050471900,Os03g0225750 OSNPB_030225750 ENOG411E94T Q8LD45 Q8LD45_ARATH Allergen, putative (At1g78040) (Phosphoglycerate mutase 1 like protein) (Pollen Ole e 1 allergen and extensin family protein) 19275 Allergen, putative (At1g78040) (Phosphoglycerate mutase 1 like protein) (Pollen Ole e 1 allergen and extensin family protein) locus:2029456; AT1G78040 pollen Ole e 1 allergen and extensin family protein NA NA NA NA NA NA NA ENOG411E94U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0537200 protein (Fragment),Os07g0537300 protein A0A0P0X7F4,A0A0P0X7T5 A0A0P0X7F4_ORYSJ,A0A0P0X7T5_ORYSJ Os07g0537200 OSNPB_070537200,Os07g0537300 OSNPB_070537300 ENOG411E948 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ NA NA NA NA NA NA NA ENOG411E942 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SprT NA NA NA NA NA NA NA ENOG411E940 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BEL1-like homeodomain NA NA NA NA NA NA NA ENOG411E946 LNK3 Q9LHH5,A0A1I9LPZ3 LNK3_ARATH,A0A1I9LPZ3_ARATH Protein LNK3 (Night light-inducible and clock-regulated 3),Uncharacterized protein DISRUPTION PHENOTYPE: No effect on circadian clock. {ECO:0000269|PubMed:25012192}. FUNCTION: Probable transcriptional coactivator. {ECO:0000250|UniProtKB:A8MQN2}. 30554,26841 Protein LNK3 (Night light-inducible and clock-regulated 3),Uncharacterized protein circadian rhythm [GO:0007623]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2082264; AT3G12320 NA NA NA NA NA NA NA NA ENOG411E947 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E944 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transporting ATPase C-terminus Os04g0605500 protein (Fragment) A0A0P0WEG7 A0A0P0WEG7_ORYSJ Os04g0605500 OSNPB_040605500 ENOG411ECS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ECS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411ECS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411ECS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411ECS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EJKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411DQDX A0A1P8B9D7,A0A1P8B9F3,F4K773,A0A1P8B9E9 A0A1P8B9D7_ARATH,A0A1P8B9F3_ARATH,F4K773_ARATH,A0A1P8B9E9_ARATH TPX2 (Targeting protein for Xklp2) protein family 17135,18193,20428,15279 TPX2 (Targeting protein for Xklp2) protein family microtubule [GO:0005874]; spindle [GO:0005819]; activation of protein kinase activity [GO:0032147]; regulation of mitotic spindle organization [GO:0060236],integral component of membrane [GO:0016021]; microtubule [GO:0005874]; spindle [GO:0005819]; activation of protein kinase activity [GO:0032147]; regulation of mitotic spindle organization [GO:0060236] locus:1006230588; AT5G37478 Targeting protein for Xklp2 (TPX2) Os09g0307300 protein (cDNA clone:J013060B12, full insert sequence),Os09g0307300 protein (Fragment) Q0J2S5,A0A0P0XKB3 Q0J2S5_ORYSJ,A0A0P0XKB3_ORYSJ Os09g0307300 Os09g0307300 OsJ_28787 OSNPB_090307300,Os09g0307300 OSNPB_090307300 ENOG411EJKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative gypsy type transposon Os08g0481125 protein,Os03g0100275 protein A0A0P0XGY8,A0A0P0VRT0 A0A0P0XGY8_ORYSJ,A0A0P0VRT0_ORYSJ Os08g0481125 OSNPB_080481125,Os03g0100275 OSNPB_030100275 ENOG411EJKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Sas10_Utp3_C NA NA NA NA NA NA NA ENOG411DUJ9 Q94C79,Q9FYL5 Q94C79_ARATH,Q9FYL5_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At4g24800) (Uncharacterized protein At4g24805),F21J9.14 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) 28161,27832 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At4g24800) (Uncharacterized protein At4g24805),F21J9.14 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) methyltransferase activity [GO:0008168],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:504955468;,locus:2023986; AT4G24805,AT1G24480 Methyltransferase domain Os08g0119500 protein (Fragment) A0A0P0XBA9 A0A0P0XBA9_ORYSJ Os08g0119500 OSNPB_080119500 ENOG411DUJ8 PCMP-H66 Q9ZQE5 PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690, mitochondrial 65614 Pentatricopeptide repeat-containing protein At2g15690, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2053659; AT2G15690 Pentatricopeptide repeat-containing protein Os02g0152100 protein,Os04g0174800 protein (Fragment) Q67UW0,A0A0P0W7J8 Q67UW0_ORYSJ,A0A0P0W7J8_ORYSJ Os02g0152100 OsJ_05404 OSJNBa0050G13.30 OSNPB_020152100,Os04g0174800 OSNPB_040174800 ENOG411DUJ3 HLB1 Q9FHY8 HLB1_ARATH Protein HLB1 (HYPERSENSITIVE TO LATRUNCULIN B1) DISRUPTION PHENOTYPE: Hypersensitivity to latrunculin B1 (LatB) and cytochalasin, reduced primary root length and root hair growth defects. {ECO:0000269|PubMed:26941089}. FUNCTION: Component of the endomembrane trafficking machinery that is involved in protein recycling to the plasma membrane. Forms a complex with BIG5/MIN7/BEN1 and actin to modulate the function of the trans-Golgi network /early endosome at the intersection of the exocytic and endocytic pathways. May be linking post-Golgi traffic with the actin cytoskeleton. {ECO:0000269|PubMed:26941089}. 62398 Protein HLB1 (HYPERSENSITIVE TO LATRUNCULIN B1) cytosol [GO:0005829]; early endosome [GO:0005769]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; exocytosis [GO:0006887]; root hair cell development [GO:0080147]; root hair cell tip growth [GO:0048768]; root hair elongation [GO:0048767]; vesicle-mediated transport [GO:0016192] locus:2165725; AT5G41950 expressed protein Expressed protein (Os10g0518300 protein) (cDNA clone:J013089P16, full insert sequence),Expressed protein (Os03g0113800 protein) (cDNA clone:J013047E20, full insert sequence) Q7XCR5,Q10SR2 Q7XCR5_ORYSJ,Q10SR2_ORYSJ LOC_Os10g37430 Os10g0518300 OsJ_32171 OSJNBa0076F20.8 OSNPB_100518300,LOC_Os03g02270 Os03g0113800 OSNPB_030113800 ENOG411DUJ2 PQT3,MQL5.29 F4JP52,B9DFV2,A0A1P8B518,A0A1P8BBL5,A0A1P8BBL6,A0A1P8BBL8 PQT3_ARATH,PQT3L_ARATH,A0A1P8B518_ARATH,A0A1P8BBL5_ARATH,A0A1P8BBL6_ARATH,A0A1P8BBL8_ARATH E3 ubiquitin ligase PARAQUAT TOLERANCE 3 (EC 2.3.2.27),E3 ubiquitin ligase PQT3-like (EC 2.3.2.27),DWNN domain, a CCHC-type zinc finger DISRUPTION PHENOTYPE: Increased tolerance to paraquat-triggered oxidative stress associated with PRMT13/PRMT4B, APX1 and GPX1 accumulation due to increased histone H3 methylation (H3R17me2a). {ECO:0000269|PubMed:27676073}. FUNCTION: E3 ubiquitin ligase acting as a negative regulator of oxidative stress tolerance, probably by mediating 26S proteasome-mediated degradation of PRMT13/PRMT4B, thus preventing APX1 and GPX1 accumulation via the reduction of histone H3 methylation (H3R17me2a). Confers sensitivity to cadmium CdCl(2) and salt NaCl stresses. {ECO:0000269|PubMed:27676073}. R-ATH-983168; 2.3.2.27 91306,99083,77393,100848,78800,80565 E3 ubiquitin ligase PARAQUAT TOLERANCE 3 (EC 2.3.2.27),E3 ubiquitin ligase PQT3-like (EC 2.3.2.27),DWNN domain, a CCHC-type zinc finger nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-like protein ligase activity [GO:0061659]; zinc ion binding [GO:0008270]; cellular response to paraquat [GO:0072756]; histone H3-R17 methylation [GO:0034971]; negative regulation of response to oxidative stress [GO:1902883]; positive regulation of response to oxidative stress [GO:1902884]; protein ubiquitination [GO:0016567]; response to cadmium ion [GO:0046686]; response to hydrogen peroxide [GO:0042542]; response to mannitol [GO:0010555]; response to oxidative stress [GO:0006979]; response to paraquat [GO:1901562]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transferase activity [GO:0016740]; zinc ion binding [GO:0008270],nucleus [GO:0005634]; zinc ion binding [GO:0008270],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed constitutively in both shoot and root tissues. {ECO:0000269|PubMed:27676073}. locus:2130933;,locus:2171569; AT4G17410,AT5G47430 DWNN domain Os10g0431000 protein (Fragment),Os10g0431000 protein Q0IXI6,A0A0P0XV68 Q0IXI6_ORYSJ,A0A0P0XV68_ORYSJ Os10g0431000 OSNPB_100431000 ENOG411DUJ1 PCMP-E80,PCMP-E79 Q9LJI9,Q9LJJ1 PP260_ARATH,PP259_ARATH Pentatricopeptide repeat-containing protein At3g28660,Putative pentatricopeptide repeat-containing protein At3g28640 56646,56568 Pentatricopeptide repeat-containing protein At3g28660,Putative pentatricopeptide repeat-containing protein At3g28640 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mRNA modification [GO:0016556] locus:2095487;,locus:2095472; AT3G28660,AT3G28640 Pentatricopeptide repeat-containing protein Os03g0158900 protein (Pentatricopeptide, putative, expressed),Os03g0735200 protein Q8H8B5,A0A0P0W3D2 Q8H8B5_ORYSJ,A0A0P0W3D2_ORYSJ OJ1134F05.14 LOC_Os03g06300 Os03g0158900 OsJ_09480 OSNPB_030158900,Os03g0735200 OSNPB_030735200 ENOG411DUJ0 NUP54 Q8GYF7 NUP54_ARATH Nuclear pore complex protein NUP54 (Nucleoporin 54) 41817 Nuclear pore complex protein NUP54 (Nucleoporin 54) nuclear envelope [GO:0005635]; nuclear pore central transport channel [GO:0044613]; nucleolus [GO:0005730]; nucleocytoplasmic transporter activity [GO:0005487]; structural constituent of nuclear pore [GO:0017056]; mRNA transport [GO:0051028]; NLS-bearing protein import into nucleus [GO:0006607]; nuclear pore organization [GO:0006999]; protein localization to nuclear inner membrane [GO:0036228] locus:2032417; AT1G24310 Inherit from KOG: nucleoporin Os07g0295400 protein (cDNA clone:001-023-C01, full insert sequence) Q6YVE2 Q6YVE2_ORYSJ B1120F06.137 Os07g0295400 B1272H04.3 OSNPB_070295400 ENOG411DUJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0642800 protein (cDNA clone:J033059M22, full insert sequence),Os03g0364500 protein (Fragment) Q7XHY6,Q0DRQ2 Q7XHY6_ORYSJ,Q0DRQ2_ORYSJ P0524G08.133 OJ1003_C06.117 Os07g0642800 OsJ_25318 OSNPB_070642800,Os03g0364500 Os03g0364500 OSNPB_030364500 ENOG411DUJ6 PYG7 B9DHG0,F4I2Z0 PYG7_ARATH,F4I2Z0_ARATH Tetratricopeptide repeat domain-containing protein PYG7, chloroplastic (Protein PALE YELLOW GREEN 7),Tetratricopeptide repeat (TPR)-like superfamily protein DISRUPTION PHENOTYPE: Seedling lethality when homozygous. Dwarf and pale yellowish phenotype when grown on MS medium supplemented with 2% sucrose. {ECO:0000269|PubMed:16679416}. Plants grown on sucrose supplemented media have reduced growth rate. Seedlings have pale yellow leaves that are thinner and more transparent than wild type. Under UV light they display high chlorophyll fluorescence. Plants lack functional photosystem I. Chloroplasts are morphologically abnormal with few lamellae and no assimilatory starch. Seedling lethal on soil; Pale green seedlings; Thin leaves; Slow growth-R. Oelmüller-2006 FUNCTION: Nuclear genome-encoded factor required for the accumulation of photosystem I (PSI). Functions as PSI biogenesis factor (PubMed:16679416, PubMed:28522455). Cooperates with PSA3 to promote the stable assembly of PSI in the thylakoid membrane. May target primarly the PsaC subunit (PubMed:28522455). {ECO:0000269|PubMed:16679416, ECO:0000269|PubMed:28522455}. 33662,23812 Tetratricopeptide repeat domain-containing protein PYG7, chloroplastic (Protein PALE YELLOW GREEN 7),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I assembly [GO:0048564],integral component of membrane [GO:0016021] locus:2199639; AT1G22700 Tetratricopeptide repeat Os10g0460900 protein (Tetratricopeptide repeat, putative, expressed) Q337M8 Q337M8_ORYSJ Os10g0460900 LOC_Os10g32300 OSNPB_100460900 ENOG411DUJ5 O82391 JOSL_ARATH Josephin-like protein (EC 3.4.19.12) FUNCTION: May act as a deubiquitinating enzyme. {ECO:0000250}. R-ATH-5689877; 3.4.19.12 40489 Josephin-like protein (EC 3.4.19.12) nucleotide binding [GO:0000166]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579] locus:2060704; AT2G29640 josephin-like protein-like Josephin, putative, expressed (Os03g0265200 protein) (cDNA clone:J023124E13, full insert sequence) Q10NM7 Q10NM7_ORYSJ LOC_Os03g15850 Os03g0265200 OSNPB_030265200 ENOG411DUJ4 MZA15.12 Q0WUB8,Q9FIQ4,Q9C7R9,A0JQ67,A0A1P8BEP3,F4IEB6,A0A1P8BEP4,A8MR35 Q0WUB8_ARATH,Q9FIQ4_ARATH,Q9C7R9_ARATH,A0JQ67_ARATH,A0A1P8BEP3_ARATH,F4IEB6_ARATH,A0A1P8BEP4_ARATH,A8MR35_ARATH At4g17900 (PLATZ transcription factor family protein) (Uncharacterized protein At4g17900),At5g46710 (PLATZ transcription factor family protein),PLATZ transcription factor family protein (Uncharacterized protein F13A11.6),At1g32700 (PLATZ transcription factor family protein),PLATZ transcription factor family protein 25752,25822,24219,19687,19650,24315,23777,23963 At4g17900 (PLATZ transcription factor family protein) (Uncharacterized protein At4g17900),At5g46710 (PLATZ transcription factor family protein),PLATZ transcription factor family protein (Uncharacterized protein F13A11.6),At1g32700 (PLATZ transcription factor family protein),PLATZ transcription factor family protein locus:2141070;,locus:2178580;,locus:2009879;,locus:2035614; AT4G17900,AT5G46710,AT1G43000,AT1G32700 zinc-binding protein Os02g0692700 protein (PLATZ transcription factor) (Putative zinc-binding protein) (cDNA clone:001-041-A01, full insert sequence) (cDNA clone:J013092A21, full insert sequence),Os04g0591100 protein (cDNA clone:J023008F14, full insert sequence) Q6Z8A4,Q0JAL2 Q6Z8A4_ORYSJ,Q0JAL2_ORYSJ Os02g0692700 OJ1148_D05.19 OsJ_07999 OSNPB_020692700 P0017H11.7,Os04g0591100 Os04g0591100 OsJ_15974 OSNPB_040591100 ENOG411EJKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411DUJK CCD8 Q8VY26,A0A1P8B8T4 CCD8_ARATH,A0A1P8B8T4_ARATH Carotenoid cleavage dioxygenase 8, chloroplastic (AtCCD8) (EC 1.13.11.69) (EC 1.13.11.70) (AtNCED8) (Protein MORE AXILLARY BRANCHING 4) (Protein MORE AXILLARY GROWTH 4),Carotenoid cleavage dioxygenase 8 DISRUPTION PHENOTYPE: Increased shoot branching. {ECO:0000269|PubMed:15342640, ECO:0000269|PubMed:23204501}. Slight increase in inflorescence number compared with wild type.,Double mutant is phenotypically indistinguishable from either single mutant.,Mutant shows a significant decrease in petiole length and is highly branched. The axillary buds which are typically delayed in growth in wild-type plants grow out to produce leaves and inflorescences. The mutant plants have smaller rosette diameters due to a decrease in the lengths of petioles and leaf blades compared with wild-type plants.,The branching phenotype is more pronounced when plants are grown on short days owing to the nearly tenfold increase in inflorescence number in the mutant versus wild-type plants.,Double mutants were indistinguishable from bps1 single mutants.,No significant change in IAA or ABA levels. Short petioles; Increased branching-H. Klee-2006 FUNCTION: Involved in strigolactones biosynthesis by cleaving the C(27) 9-cis-10'-apo-beta-carotenal produced by CCD7. Produces the C(19) carlactone and a C(8) hydroxyaldehyde. Also shows lower activity with all-trans-10'-apo-beta-carotenal producing a C(9) dialdehyde and the C(18) 13-apo-beta-carotenone. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds. Also active on other carotenoid substrates like licopene or zeaxanthin. {ECO:0000269|PubMed:12815068, ECO:0000269|PubMed:15342640, ECO:0000269|PubMed:16507088}. MISCELLANEOUS: The branching phenotypes of the max1, ccd7/max3 and ccd8/max4 mutants can be rescued by exogenous treatment with the synthetic strigolactone analogs GR24 and 4BD. {ECO:0000305|PubMed:23204501}. ARA:AT4G32810-MONOMER;MetaCyc:AT4G32810-MONOMER; R-ATH-2453902;R-ATH-975634; 1.13.11.69;1.13.11.70; 1.13.11.69; 1.13.11.70 63957,67016 Carotenoid cleavage dioxygenase 8, chloroplastic (AtCCD8) (EC 1.13.11.69) (EC 1.13.11.70) (AtNCED8) (Protein MORE AXILLARY BRANCHING 4) (Protein MORE AXILLARY GROWTH 4),Carotenoid cleavage dioxygenase 8 chloroplast stroma [GO:0009570]; 9-cis-10'-apo-beta-carotenal cleavage oxygenase activity [GO:0102396]; all-trans-beta-apo-10'-carotenal cleavage oxygenase activity [GO:0102251]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702]; auxin polar transport [GO:0009926]; carotene catabolic process [GO:0016121]; leaf morphogenesis [GO:0009965]; response to auxin [GO:0009733]; secondary shoot formation [GO:0010223]; strigolactone biosynthetic process [GO:1901601]; xanthophyll catabolic process [GO:0016124],metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702] TISSUE SPECIFICITY: Expressed in flowers, siliques, inflorescence stems, petiole and leaves, and at a much higher level in roots. {ECO:0000269|PubMed:12815068, ECO:0000269|PubMed:16507088, ECO:0000269|PubMed:21243360}. locus:2134093; AT4G32810 Carotenoid cleavage dioxygenase 8 Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic (OsCCD8b) (EC 1.13.11.69) (EC 1.13.11.70) (Protein DWARF-10) (Protein MAX4 homolog) Q8LIY8 CCD8B_ORYSJ CCD8B D10 Os01g0746400 LOC_Os01g54270 OSJNBa0014K08.38 DISRUPTION PHENOTYPE: Dwarf phenotype with increased branching and tiller number, and strong reduction of the root levels of strigolactones. {ECO:0000269|PubMed:15659436, ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:18690207, ECO:0000269|PubMed:19470589, ECO:0000269|PubMed:23204501}. FUNCTION: Involved in strigolactones biosynthesis by cleaving the C(27) 9-cis-10'-apo-beta-carotenal produced by CCD7. Produces the C(19) carlactone and a C(8) hydroxyaldehyde. Also shows lower activity with all-trans-10'-apo-beta-carotenal producing a C(9) dialdehyde and the C(18) 13-apo-beta-carotenone. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds. {ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:18690207}. MISCELLANEOUS: The branching phenotypes of the ccd7/max3 and ccd8b/max4 mutants can be rescued by exogenous treatment with the synthetic strigolactone analogs GR24 and 4BD. {ECO:0000305|PubMed:23204501}. ENOG411DUJJ DRP1A,DL1 P42697,F4K015 DRP1A_ARATH,F4K015_ARATH Dynamin-related protein 1A (Dynamin-like protein 1) (Dynamin-like protein A) (Protein RADIAL SWELLING 9),Dynamin-like protein DISRUPTION PHENOTYPE: Vascular discontinuity. {ECO:0000269|PubMed:15923323}. Embryo defective; Cotyledon-S. Bednarek-2001 FUNCTION: Microtubule-associated force-producing protein that is targeted to the forming cell plate during cytokinesis. Plays also a major role in plasma membrane maintenance and cell wall integrity with implications in vesicular trafficking, polar cell expansion, vascular formation, and other aspects of plant growth and development. Has a GTPase activity. {ECO:0000269|PubMed:11351070, ECO:0000269|PubMed:12671086, ECO:0000269|PubMed:14750520, ECO:0000269|PubMed:15923323, ECO:0000269|PubMed:22107825}. ARA:AT5G42080-MONOMER; 68172,67510 Dynamin-related protein 1A (Dynamin-like protein 1) (Dynamin-like protein A) (Protein RADIAL SWELLING 9),Dynamin-like protein cell plate [GO:0009504]; chloroplast thylakoid membrane [GO:0009535]; cytosol [GO:0005829]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; clathrin binding [GO:0030276]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; protein histidine kinase binding [GO:0043424]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; clathrin-dependent endocytosis [GO:0072583]; cytokinesis by cell plate formation [GO:0000911]; embryo development ending in seed dormancy [GO:0009793]; mitochondrial fission [GO:0000266]; regulation of establishment of cell polarity [GO:2000114]; root hair initiation [GO:0048766]; trichome branching [GO:0010091]; xylem and phloem pattern formation [GO:0010051],GTP binding [GO:0005525]; GTPase activity [GO:0003924] TISSUE SPECIFICITY: Ubiquitous. Expressed in leaves (at protein level). {ECO:0000269|PubMed:12834397, ECO:0000269|PubMed:15815986, ECO:0000269|PubMed:7548829, ECO:0000269|PubMed:9342876}. locus:2165805; AT5G42080 dynamin-related protein Os05g0556100 protein,Os01g0633900 protein (Fragment),Os01g0681100 protein Q0DG31,A0A0P0V5L6,A0A0P0V6L3 Q0DG31_ORYSJ,A0A0P0V5L6_ORYSJ,A0A0P0V6L3_ORYSJ Os05g0556100 Os05g0556100 OSNPB_050556100,Os01g0633900 OSNPB_010633900,Os01g0681100 OSNPB_010681100 ENOG411DUJI POT7 Q9FY75 POT7_ARATH Potassium transporter 7 (AtHAK7) (AtPOT7) FUNCTION: Probable potassium transporter. 95354 Potassium transporter 7 (AtHAK7) (AtPOT7) integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; adenylate cyclase activity [GO:0004016]; potassium ion transmembrane transporter activity [GO:0015079]; potassium ion transport [GO:0006813] locus:2184722; AT5G09400 Potassium transporter Probable potassium transporter 14 (OsHAK14),Os07g0509200 protein (Fragment) Q69RI8,A0A0P0X6D4 HAK14_ORYSJ,A0A0P0X6D4_ORYSJ HAK14 Os07g0509200 LOC_Os07g32530 P0409B11.4,Os07g0509200 OSNPB_070509200 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DUJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0324900 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J013135G08, full insert sequence) Q10M33 Q10M33_ORYSJ LOC_Os03g20870 Os03g0324900 OSNPB_030324900 ENOG411DUJN Q8S8K1,A0A1P8AXB9 Q8S8K1_ARATH,A0A1P8AXB9_ARATH At2g17975 (Predicted protein) (Zinc finger (Ran-binding) family protein),Zinc finger (Ran-binding) family protein 30236,26343 At2g17975 (Predicted protein) (Zinc finger (Ran-binding) family protein),Zinc finger (Ran-binding) family protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; 3'-UTR-mediated mRNA stabilization [GO:0070935]; response to abscisic acid [GO:0009737],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872] locus:2827841; AT2G17975 Zinc finger (Ran-binding) NA NA NA NA NA NA NA ENOG411DUJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Os12g0554500 protein Q0IMQ4 Q0IMQ4_ORYSJ Os12g0554500 Os12g0554500 OSNPB_120554500 ENOG411DUJC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os09g0474051 protein A0A0P0XPC3 A0A0P0XPC3_ORYSJ Os09g0474051 OSNPB_090474051 ENOG411DUJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411DUJA Q8W4R7,A0A1P8APY1,F4HWD1,F4HWD0 Q8W4R7_ARATH,A0A1P8APY1_ARATH,F4HWD1_ARATH,F4HWD0_ARATH At1g76620/F14G6_22 (Uncharacterized protein At1g76620),Uncharacterized protein Pigment defective embryo-D. Meinke-2011 59168,47956,56832,58265 At1g76620/F14G6_22 (Uncharacterized protein At1g76620),Uncharacterized protein chloroplast [GO:0009507] locus:2011661;,locus:2199567; AT1G76620,AT1G21060 Protein of unknown function DUF547 Os08g0515700 protein (Ternary complex factor-like),Os09g0493400 protein Q7EZ88,B9G4C3 Q7EZ88_ORYSJ,B9G4C3_ORYSJ P0686C03.125 Os08g0515700 OSNPB_080515700,Os09g0493400 OsJ_29864 OSNPB_090493400 ENOG411DUJG FPG1,MMH-1 O80358,A0A1P8AVR7,A0A1P8AVL9 FPG_ARATH,A0A1P8AVR7_ARATH,A0A1P8AVL9_ARATH Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (EC 3.2.2.23) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase FPG1) (Formamidopyrimidine-DNA glycosylase 1) (AtFPG-1) (Formamidopyrimidine-DNA glycosylase 2) (AtFPG-2) (Protein MutM homolog 1) (AtMMH-1) (Protein MutM homolog 2) (AtMMH-2),MUTM homolog-1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions or UV-A irradiation stress. {ECO:0000269|Ref.7}. FUNCTION: Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Can process efficiently 4,6-diamino-5-formamidopyrimidine (FapyA), 2,6-diamino-4- hydroxy-5-formamidopyrimidine (FapyG) and the further oxidation products of 8-oxoguanine (8-oxoG), such as guanidinohydantoin and spiroiminodihydantoin. Has marginal activity towards 8-oxoG. Has AP (apurinic/apyrimidinic) lyase activity. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. {ECO:0000269|PubMed:11272725, ECO:0000269|PubMed:22789755, ECO:0000269|PubMed:9819050}. ARA:AT1G52500-MONOMER; 3.2.2.23; 3.2.2.23; 4.2.99.18 43194,32041,25003 Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (EC 3.2.2.23) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase FPG1) (Formamidopyrimidine-DNA glycosylase 1) (AtFPG-1) (Formamidopyrimidine-DNA glycosylase 2) (AtFPG-2) (Protein MutM homolog 1) (AtMMH-1) (Protein MutM homolog 2) (AtMMH-2),MUTM homolog-1 nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; DNA N-glycosylase activity [GO:0019104]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; oxidized purine nucleobase lesion DNA N-glycosylase activity [GO:0008534]; zinc ion binding [GO:0008270]; base-excision repair [GO:0006284]; DNA repair [GO:0006281]; nucleotide-excision repair [GO:0006289]; response to oxidative stress [GO:0006979],damaged DNA binding [GO:0003684]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; oxidized purine nucleobase lesion DNA N-glycosylase activity [GO:0008534]; zinc ion binding [GO:0008270]; base-excision repair [GO:0006284]; nucleotide-excision repair [GO:0006289] TISSUE SPECIFICITY: Expressed in leaves (at protein levels). {ECO:0000269|PubMed:9819050}. locus:2035195; AT1G52500 formamidopyrimidine-DNA Os08g0304900 protein (Putative formamidopyrimidine-DNA glycosylase) (cDNA clone:001-113-E09, full insert sequence),Os06g0643600 protein (Putative formamidopyrimidine-DNA glycosylase 1) (cDNA clone:J013005H14, full insert sequence) Q69RX3,Q67WP0 Q69RX3_ORYSJ,Q67WP0_ORYSJ Os08g0304900 Os08g0304900 OSJNBa0051M20.125 OSJNBa0058D03.115 OSNPB_080304900,Os06g0643600 Os06g0643600 OSNPB_060643600 P0017B12.1 P0416A11.34 ENOG411DUJF O49522,A0A1P8B8W3 O49522_ARATH,A0A1P8B8W3_ARATH Transmembrane protein (Uncharacterized protein AT4g18540) (Uncharacterized protein F28J12.200),Transmembrane protein 57523,50412 Transmembrane protein (Uncharacterized protein AT4g18540) (Uncharacterized protein F28J12.200),Transmembrane protein integral component of membrane [GO:0016021] locus:2124514; AT4G18540 NA Conserved transmembrane protein-like (Os01g0613100 protein) Q5ZDY7 Q5ZDY7_ORYSJ Os01g0613100 OsJ_02592 OSNPB_010613100 P0410E01.23 ENOG411DUJE ASPGA1 Q8GXG1,P50287,F4K9K7 ASPGB_ARATH,ASPGA_ARATH,F4K9K7_ARATH Probable isoaspartyl peptidase/L-asparaginase 2 (EC 3.4.19.5) (L-asparagine amidohydrolase 2) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 2 subunit alpha; Isoaspartyl peptidase/L-asparaginase 2 subunit beta],Isoaspartyl peptidase/L-asparaginase 1 (EC 3.4.19.5) (L-asparagine amidohydrolase 1) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 1 subunit alpha; Isoaspartyl peptidase/L-asparaginase 1 subunit beta],N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Increased sensitivity to delay in root hair emergence in response to exogenous asparagine. Increased accumulation of asparagine in root when grown on medium containing asparagine as a single nitrogen source. Increased seed size under conditions of nitrogen deficiency. Increased concentration of free asparagine and other free amino acids in seed when grown under low illumination.,increased sensitivity to inhibition of root elongation by exogenous asparagine FUNCTION: Acts in asparagine catabolism and also in the final steps of protein degradation via hydrolysis of a range of isoaspartyl dipeptides. {ECO:0000250}.,FUNCTION: Acts in asparagine catabolism but also in the final steps of protein and degradation via hydrolysis of a range of isoaspartyl dipeptides. The affinity for Asn and at least 4 isoaspartyl dipeptides (L-beta-Asp-Ala, L-beta-Asp-Gly, L-beta-Asp-Leu, L-beta-Asp-Phe) is quite low, KM being greater than 4.0 mM. The enzyme is inactive on alpha-aspartyl dipeptides. {ECO:0000269|PubMed:11988085}. ARA:AT3G16150-MONOMER;,ARA:AT5G08100-MONOMER; 3.5.1.1; 3.4.19.5 34341,33027,24554 Probable isoaspartyl peptidase/L-asparaginase 2 (EC 3.4.19.5) (L-asparagine amidohydrolase 2) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 2 subunit alpha; Isoaspartyl peptidase/L-asparaginase 2 subunit beta],Isoaspartyl peptidase/L-asparaginase 1 (EC 3.4.19.5) (L-asparagine amidohydrolase 1) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 1 subunit alpha; Isoaspartyl peptidase/L-asparaginase 1 subunit beta],N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein asparaginase activity [GO:0004067]; beta-aspartyl-peptidase activity [GO:0008798],cytosol [GO:0005829]; asparaginase activity [GO:0004067]; beta-aspartyl-peptidase activity [GO:0008798],hydrolase activity [GO:0016787] locus:2093387;,locus:2181509; AT3G16150,AT5G08100 isoaspartyl peptidase L-asparaginase OSJNBb0059K02.14 protein (Os04g0650700 protein),Os03g0597600 protein (Transposon protein, putative, unclassified, expressed) (cDNA clone:J023020F03, full insert sequence),Os04g0650700 protein (Fragment) Q7XMP7,Q10H87,A0A0P0WFN0 Q7XMP7_ORYSJ,Q10H87_ORYSJ,A0A0P0WFN0_ORYSJ OSJNBb0059K02.14 Os04g0650700 OSNPB_040650700,Os03g0597600 LOC_Os03g40070 Os03g0597600 OSNPB_030597600,Os04g0650700 OSNPB_040650700 ENOG411DUJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Os02g0463500 protein (Putative carboxypeptidase C) Q6K4Y0 Q6K4Y0_ORYSJ OSJNBa0035A24.20 Os02g0463500 OSNPB_020463500 ENOG411DUJZ PEX12 Q9M841,A0A1I9LLU9 PEX12_ARATH,A0A1I9LLU9_ARATH Peroxisome biogenesis protein 12 (Peroxin-12) (AtPEX12) (Pex12p) (Protein ABERRANT PEROXISOME MORPHOLOGY 4),Peroxin-12 DISRUPTION PHENOTYPE: Embryo lethality at the heart stage. {ECO:0000269|PubMed:16113209}. Embryonic lethal in homozygotes. In heterozygous plants immature siliques had approximately 22% white seeds which became purplish and shriveled as the siliques matured. Knockout embryos showed retarded growth and in most cases were able to develop to the heart stage but failed to grow further into torpedo and mature embryos. Null embryos lacked peroxisomes contained small and underdeveloped plastids and were missing characteristic lipid body structures.,apm4 mutants showed decreased efficiency of PTS1- and PTS2- (peroxisome targeting signal)-dependent protein transport into peroxisome. apm4 mutation also represses plant growth. Null: Embryo defective; Transition; Knockdown: Low penetrance of seedling lethality; Low germination rate; Short roots and inflorescence stems; Root growth resistant to 2,4-DB-J. Hu-2007 FUNCTION: Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes. Essential for the peroxisomal targeting of PEX7. Required for the export/release of receptors on the peroxisome membrane. Acts as an E3 ubiquitin-protein ligase involved in monoubiquitination of PEX5. {ECO:0000269|PubMed:16113209, ECO:0000269|PubMed:16813573, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:19594707, ECO:0000269|PubMed:20679226, ECO:0000269|PubMed:23336935}. R-ATH-8866654; 44400,45713 Peroxisome biogenesis protein 12 (Peroxin-12) (AtPEX12) (Pex12p) (Protein ABERRANT PEROXISOME MORPHOLOGY 4),Peroxin-12 integral component of peroxisomal membrane [GO:0005779]; peroxisomal importomer complex [GO:1990429]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; protein C-terminus binding [GO:0008022]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; embryonic morphogenesis [GO:0048598]; fatty acid beta-oxidation [GO:0006635]; peroxisome organization [GO:0007031]; protein import into peroxisome matrix [GO:0016558]; protein monoubiquitination [GO:0006513],integral component of peroxisomal membrane [GO:0005779]; protein C-terminus binding [GO:0008022]; zinc ion binding [GO:0008270]; protein targeting to peroxisome [GO:0006625] TISSUE SPECIFICITY: Expressed in young seedlings, roots, leaves, seeds and flowers. {ECO:0000269|PubMed:16113209}. locus:2100890; AT3G04460 peroxisome biogenesis protein 12-like Peroxisome biogenesis protein 12 (Peroxin-12) Q337M1 Q337M1_ORYSJ LOC_Os10g32960 Os10g0467200 OsJ_31837 OSNPB_100467200 FUNCTION: Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes. {ECO:0000256|PIRNR:PIRNR038074}. ENOG411DUJY VIP1,VIP2,AtVIP1 F4J8C6,Q84WW3,A0A1P8BBN0,A0A1P8BBK5,A0A1P8BBL1,A0A178VEL3,F4J8C7 VIP1L_ARATH,VIP2L_ARATH,A0A1P8BBN0_ARATH,A0A1P8BBK5_ARATH,A0A1P8BBL1_ARATH,A0A178VEL3_ARATH,F4J8C7_ARATH Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP1 (EC 2.7.4.21) (EC 2.7.4.24) (Probable protein QUANTITATIVE VITAMIN E-7) (Protein VIP HOMOLOG 2) (VIP1 homolog protein 1) (Arabidopsis homolog protein of yeast VIP1 1) (AtVIP1),Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP2 (EC 2.7.4.21) (EC 2.7.4.24) (Protein VIP HOMOLOG 1) (VIP1 homolog protein 2) (Arabidopsis homolog protein of yeast VIP1 2) (AtVIP2),Phosphoglycerate mutase-like family protein DISRUPTION PHENOTYPE: Abnormal accumulation of InsP7 and reduced levels of InsP8. Increased weight increase of P.rapae and M.brassicae larvae feeded on mutant plants thus leading to a reduced resistance. Increased susceptibility to the necrotrophic fungi B.cinerea and A.brassicicola. Increased levels of jasmonic acid (JA) and bioactive conjugates such as JA-Leu/Ile and JA-Val upon mechanical wounding, but reduced induction of JA-responsive genes in challenged mutant plants. {ECO:0000269|PubMed:25901085}. FUNCTION: Bifunctional inositol kinase that acts in concert with the IP6K kinases to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, may regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, and exocytosis. Phosphorylates inositol hexakisphosphate (InsP6) at positions 1 or 3 to produce PP-InsP5 which is in turn phosphorylated by IP6Ks to produce (PP)2-InsP4. Alternatively, phosphorylates at position 1 or 3 PP-InsP5, produced by IP6Ks from InsP6, to produce (PP)2-InsP4 (PubMed:25231822). Probably involved in vitamin E homeostasis via the regulation of gamma-tocopherol biosynthesis (PubMed:17077148). Catalyzes the conversion of InsP7 to InsP8. Regulates jasmonic acid (JA) perception and plant defenses against herbivorous insects (e.g. P.rapae) and necrotrophic fungi (e.g. M.brassicae, B.cinerea and A.brassicicola) by triggering the production of jasmonate-induced pools of InsP8 and subsequent activation of SCF(COI1) E3 ubiquitin ligase complexes with JAZ proteins (e.g. TIFY10A/JAZ1) (PubMed:25901085). {ECO:0000269|PubMed:17077148, ECO:0000269|PubMed:25231822, ECO:0000269|PubMed:25901085}.,FUNCTION: Bifunctional inositol kinase that acts in concert with the IP6K kinases to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, may regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, and exocytosis. Phosphorylates inositol hexakisphosphate (InsP6) at positions 1 or 3 to produce PP-InsP5 which is in turn phosphorylated by IP6Ks to produce (PP)2-InsP4. Alternatively, phosphorylates at position 1 or 3 PP-InsP5, produced by IP6Ks from InsP6, to produce (PP)2-InsP4 (PubMed:25231822). Probably involved in vitamin E homeostasis via the regulation of gamma-tocopherol biosynthesis (By similarity). {ECO:0000250|UniProtKB:F4J8C6, ECO:0000269|PubMed:25231822}. ARA:AT5G15070-MONOMER; R-ATH-1855167; 2.7.4.21; 2.7.4.24 118924,118783,91209,106403,119396,115857,119527 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP1 (EC 2.7.4.21) (EC 2.7.4.24) (Probable protein QUANTITATIVE VITAMIN E-7) (Protein VIP HOMOLOG 2) (VIP1 homolog protein 1) (Arabidopsis homolog protein of yeast VIP1 1) (AtVIP1),Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP2 (EC 2.7.4.21) (EC 2.7.4.24) (Protein VIP HOMOLOG 1) (VIP1 homolog protein 2) (Arabidopsis homolog protein of yeast VIP1 2) (AtVIP2),Phosphoglycerate mutase-like family protein cytosol [GO:0005829]; plasma membrane [GO:0005886]; acid phosphatase activity [GO:0003993]; ATP binding [GO:0005524]; diphosphoinositol-pentakisphosphate kinase activity [GO:0033857]; inositol heptakisphosphate kinase activity [GO:0000829]; inositol hexakisphosphate 1-kinase activity [GO:0052723]; inositol hexakisphosphate 3-kinase activity [GO:0052724]; inositol hexakisphosphate 5-kinase activity [GO:0000832]; inositol hexakisphosphate kinase activity [GO:0000828]; defense response to fungus, incompatible interaction [GO:0009817]; inositol metabolic process [GO:0006020]; inositol phosphate biosynthetic process [GO:0032958]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; positive regulation of antifungal innate immune response [GO:1905036]; positive regulation of defense response to insect [GO:1900367]; positive regulation of vitamin E biosynthetic process [GO:1904966],cytosol [GO:0005829]; plasma membrane [GO:0005886]; acid phosphatase activity [GO:0003993]; ATP binding [GO:0005524]; diphosphoinositol-pentakisphosphate kinase activity [GO:0033857]; inositol heptakisphosphate kinase activity [GO:0000829]; inositol hexakisphosphate 1-kinase activity [GO:0052723]; inositol hexakisphosphate 3-kinase activity [GO:0052724]; inositol hexakisphosphate 5-kinase activity [GO:0000832]; inositol hexakisphosphate kinase activity [GO:0000828]; inositol metabolic process [GO:0006020]; inositol phosphate biosynthetic process [GO:0032958]; positive regulation of vitamin E biosynthetic process [GO:1904966],acid phosphatase activity [GO:0003993],plasma membrane [GO:0005886]; acid phosphatase activity [GO:0003993]; diphosphoinositol-pentakisphosphate kinase activity [GO:0033857]; inositol heptakisphosphate kinase activity [GO:0000829]; inositol hexakisphosphate kinase activity [GO:0000828]; defense response to fungus, incompatible interaction [GO:0009817]; inositol metabolic process [GO:0006020]; inositol phosphate biosynthetic process [GO:0032958]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861] TISSUE SPECIFICITY: Mostly expressed in vegetative tissues (e.g. leaves and stems), and, to a lower extent, in roots, shoots and reproductive tissues (e.g. flowers and siliques) (PubMed:25231822, PubMed:25901085). Also present in mature pollen (PubMed:25901085). {ECO:0000269|PubMed:25231822, ECO:0000269|PubMed:25901085}.,TISSUE SPECIFICITY: Mostly expressed at low levels in roots and reproductive tissues (e.g. flowers and siliques), and, to a lower extent, in vegetative tissues (e.g. roots, shoots, leaves and stems) (PubMed:25231822). Also present in mature pollen (PubMed:25231822, PubMed:25901085). {ECO:0000269|PubMed:25231822, ECO:0000269|PubMed:25901085}. locus:2102057; AT3G01310,AT5G15070 inositol hexakisphosphate and diphosphoinositol-pentakisphosphate Expressed protein (LOC495012 protein, putative, expressed) (Os03g0689100 protein),Os01g0777700 protein Q6AVJ1,A0A0P0V8W2 Q6AVJ1_ORYSJ,A0A0P0V8W2_ORYSJ OSJNBa0022C08.16 LOC_Os03g48300 Os03g0689100 OsJ_12165 OSNPB_030689100,Os01g0777700 OSNPB_010777700 ENOG411DUJX MCL19.13 Q9FNL4 Q9FNL4_ARATH Protein kinase superfamily protein (Serine/threonine protein kinase-like protein) 36235 Protein kinase superfamily protein (Serine/threonine protein kinase-like protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2161373; AT5G46080 Serine threonine-protein kinase-like protein Os08g0376600 protein (Serine/threonine protein kinase-like protein) Q8GVV7 Q8GVV7_ORYSJ OJ1705_C03.114 Os08g0376600 OSNPB_080376600 P0436B06.40 ENOG411DUJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 family protein, expressed (Os12g0268000 protein) (cDNA clone:J023107I12, full insert sequence) Q2QUC5 Q2QUC5_ORYSJ Os12g0268000 LOC_Os12g16720 OSNPB_120268000 ENOG411DUJR AHL11,AHL9 Q8L7L5,O80834,A0A1P8B2P7 AHL11_ARATH,AHL9_ARATH,A0A1P8B2P7_ARATH AT-hook motif nuclear-localized protein 11,AT-hook motif nuclear-localized protein 9,AT hook motif DNA-binding family protein FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 36782,36335,28473 AT-hook motif nuclear-localized protein 11,AT-hook motif nuclear-localized protein 9,AT hook motif DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2098861;,locus:2050766; AT3G61310,AT2G45850 AT hook motif domain containing protein expressed Os02g0824300 protein (Putative AT-hook protein 1) Q6K9W5 Q6K9W5_ORYSJ Os02g0824300 Os02g0824300 OJ1063_D06.10 OJ1136_C04.18 OsJ_08940 OSNPB_020824300 ENOG411DUJQ AVT1H Q9LFE3 AVT1H_ARATH Amino acid transporter AVT1H (AtAvt1H) R-ATH-425393;R-ATH-888590; 45808 Amino acid transporter AVT1H (AtAvt1H) integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2149045; AT5G16740 amino acid transporter Amino acid transporter family protein, putative (Os11g0298000 protein) (Transmembrane amino acid transporter protein) Q53MQ4 Q53MQ4_ORYSJ Os11g0298000 LOC_Os11g19240 OsJ_33697 OSNPB_110298000 ENOG411DUJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DUJW VLN2,VLN3 O81644,O81645,A0A1I9LLW3,A0A1I9LLV6 VILI2_ARATH,VILI3_ARATH,A0A1I9LLW3_ARATH,A0A1I9LLV6_ARATH Villin-2,Villin-3,Villin 3 DISRUPTION PHENOTYPE: No visible phenotype and no visible effect on pollen tube growth. Decreased severing frequency of actin filaments. Vln2 and vln5 double mutants have pollen tubes curled and wider at some regions along the tube. They accumulate actin filaments at the tips of pollen tubes (PubMed:23715472). Vln2 and vln3 double mutants show anomaly in the growth direction of organs (PubMed:22209875) and defects in sclerenchyma development, but no alterations in the secondary cell-wall machinery (PubMed:22563899). {ECO:0000269|PubMed:22209875, ECO:0000269|PubMed:22563899, ECO:0000269|PubMed:23715472}.,DISRUPTION PHENOTYPE: No visible phenotype. Vln2 and vln3 double mutants show absence of thick actin filament bundles in the cells, anomaly in the growth direction of organs (PubMed:22209875) and defects in sclerenchyma development, but no alterations in the secondary cell-wall machinery (PubMed:22563899). {ECO:0000269|PubMed:22209875, ECO:0000269|PubMed:22563899}. FUNCTION: Ca(2+)-regulated actin-binding protein. Involved in actin filaments bundling. Caps the barbed end of actin filaments and is able to sever them in a calcium-dependent manner. Required for the construction of actin collars in pollen tubes. Acts redundantly with VLN5 (AC Q9LVC6) to generate thick actin filament bundles and to regulate polarized pollen tube growth (PubMed:23715472). Acts redundantly with VLN3 (AC O81645) to regulate directional organ growth and in sclerenchyma development (PubMed:22209875, PubMed:22563899, respectively). {ECO:0000269|PubMed:10631247, ECO:0000269|PubMed:22209875, ECO:0000269|PubMed:22563899, ECO:0000269|PubMed:23715472}.,FUNCTION: Binds actin and actin filament bundles in a Ca(2+)-insensitive manner, but severs actin filaments in a calcium-dependent manner, regardless of the presence or not of VLN1 (AC O81643). Acts redundantly with VLN2 (AC O81644) to generate thick actin filament bundles, to regulate directional organ growth (PubMed:22209875) and in sclerenchyma development (PubMed:22563899). {ECO:0000269|PubMed:10631247, ECO:0000269|PubMed:20807878, ECO:0000269|PubMed:22209875, ECO:0000269|PubMed:22563899}. 107842,106349,90817,80754 Villin-2,Villin-3,Villin 3 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693],actin filament [GO:0005884]; cytoplasm [GO:0005737]; actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693]; actin filament severing [GO:0051014],actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017] TISSUE SPECIFICITY: Expressed in all tissues examined. Mainly detected in the root epidermis and vasculature. Expressed in the root cap. {ECO:0000269|PubMed:10631247, ECO:0000269|PubMed:22209875, ECO:0000269|PubMed:22563899}.,TISSUE SPECIFICITY: Expressed in all tissues examined, including root hairs. {ECO:0000269|PubMed:10631247, ECO:0000269|PubMed:20807878, ECO:0000269|PubMed:22209875, ECO:0000269|PubMed:22563899}. locus:2054401;,locus:2082523; AT2G41740,AT3G57410 villin-2-like Villin-2,Os03g0356700 protein (Fragment) Q10L71,A0A0P0VYG1 VLN2_ORYSJ,A0A0P0VYG1_ORYSJ VLN2 LOC_Os03g24220 Os03g0356700 OSNPB_030356700,Os03g0356700 OSNPB_030356700 DISRUPTION PHENOTYPE: Malformed organs, including twisted roots and shoots at the seedling stage, mainly caused by asymmetrical expansion of cells on the opposite sides of an organ. Increased dynamic actin cytoskeleton network. Hypersensitive gravitropic response, faster recycling of PIN2, and altered auxin distribution. {ECO:0000269|PubMed:26486445}. FUNCTION: Ca(2+)-regulated actin-binding protein (By similarity). Binds actin microfilaments (MFs). Involved in actin filament bundling, severing and capping. Caps the barbed end of actin filaments and is able to sever them in a calcium-dependent manner. May regulate cell expansion in developing organs. Required for the regulation of plant architecture via the modulation of polar auxin transport and root gravitropism (PubMed:26486445). {ECO:0000250|UniProtKB:O81644, ECO:0000269|PubMed:26486445}. ENOG411DUJV AtRLP15,AtRLP13,RLP16,RLP45,RLP9,RLP1,RLP13 Q9C6A8,Q9C6A6,F4HTV6,F4J9A8,A0A1P8ATR9,A0A1I9LLM1,A0A1P8AUZ2,A0A1P8ATQ6,A0A1P8AUZ5,F4I9S2,F4HQM4,F4HQM5,F4HTV3,F4I9S3,F4HQM6 Q9C6A8_ARATH,Q9C6A6_ARATH,F4HTV6_ARATH,F4J9A8_ARATH,A0A1P8ATR9_ARATH,A0A1I9LLM1_ARATH,A0A1P8AUZ2_ARATH,A0A1P8ATQ6_ARATH,A0A1P8AUZ5_ARATH,F4I9S2_ARATH,F4HQM4_ARATH,F4HQM5_ARATH,F4HTV3_ARATH,F4I9S3_ARATH,F4HQM6_ARATH Disease resistance protein, putative; 1096-4664 (Receptor like protein 15),Disease resistance protein, putative; 11609-15699 (Receptor like protein 13),Receptor like protein 16,Receptor like protein 45,Receptor like protein 9,Receptor like protein 1,Receptor like protein 13 107565,119850,33464,100627,106519,104769,121495,86668,118443,116271,121879,116216,112052,105689,102385 Disease resistance protein, putative; 1096-4664 (Receptor like protein 15),Disease resistance protein, putative; 11609-15699 (Receptor like protein 13),Receptor like protein 16,Receptor like protein 45,Receptor like protein 9,Receptor like protein 1,Receptor like protein 13 integral component of membrane [GO:0016021] locus:2019662;,locus:2019652;,locus:2101943;,locus:2196302;,locus:2025012;,locus:2037313; AT1G74190,AT1G74200,AT3G53240,AT1G58190,AT1G07390,AT1G74170 Receptor like protein Os06g0179800 protein (Putative disease resistance protein Cf-2.1) (cDNA clone:J023101N24, full insert sequence),Os04g0648200 protein (Fragment),Os06g0179800 protein,OSJNBa0010D21.1 protein (Os04g0647900 protein),Os04g0648400 protein Q8H609,Q0J9K0,Q5SMK3,Q7XTW4,A0A0P0WFJ3 Q8H609_ORYSJ,Q0J9K0_ORYSJ,Q5SMK3_ORYSJ,Q7XTW4_ORYSJ,A0A0P0WFJ3_ORYSJ Os06g0179800 Os06g0179800 OsJ_20336 OSJNBa0035I03.22-1 OSJNBb0019L07.4-1 OSNPB_060179800,Os04g0648200 Os04g0648200 OSNPB_040648200,Os06g0179800 OSJNBa0035I03.22-2 OSJNBb0019L07.4-2 OSNPB_060179800,Os04g0647900 Os04g0647900 OSJNBa0010D21.1 OSNPB_040647900,Os04g0648400 OSNPB_040648400 ENOG411DUJU GSTT1,GSTT2,GSTT3 Q9ZRT5,Q8L727,Q9FHE1,A0A1P8BC16,A0A1P8BC14 GSTT1_ARATH,GSTT2_ARATH,GSTT3_ARATH,A0A1P8BC16_ARATH,A0A1P8BC14_ARATH Glutathione S-transferase T1 (AtGSTT1) (EC 2.5.1.18) (GST class-theta member 1) (Glutathione S-transferase 10),Glutathione S-transferase T2 (AtGSTT2) (EC 2.5.1.18) (GST class-theta member 2) (Glutathione S-transferase 10B),Glutathione S-transferase T3 (AtGSTT3) (EC 2.5.1.18) (GST class-theta member 3) (Glutathione S-transferase 10C),Glutathione S-transferase THETA 3 FUNCTION: In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and p-nitrobenzyl chloride (pNBC), and glutathione peroxidase activity toward cumene hydroperoxide and linoleic acid-13-hydroperoxide. May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:12090627}.,FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT5G41210-MONOMER;,ARA:AT5G41240-MONOMER;,ARA:AT5G41220-MONOMER; R-ATH-156590; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 27653,67689,67555,61037,61658 Glutathione S-transferase T1 (AtGSTT1) (EC 2.5.1.18) (GST class-theta member 1) (Glutathione S-transferase 10),Glutathione S-transferase T2 (AtGSTT2) (EC 2.5.1.18) (GST class-theta member 2) (Glutathione S-transferase 10B),Glutathione S-transferase T3 (AtGSTT3) (EC 2.5.1.18) (GST class-theta member 3) (Glutathione S-transferase 10C),Glutathione S-transferase THETA 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; peroxisome [GO:0005777]; glutathione transferase activity [GO:0004364]; peroxidase activity [GO:0004601]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; peroxisome [GO:0005777]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; nucleus [GO:0005634]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],transferase activity [GO:0016740] locus:2163096;,locus:2155105;,locus:2155090; AT5G41210,AT5G41240,AT5G41220 glutathione s-transferase Glutathione S-transferase, N-terminal domain containing protein, expressed (Os11g0588300 protein) (Putative glutathione S-transferase OsGSTT1) (cDNA clone:001-038-D05, full insert sequence) (cDNA clone:006-311-D09, full insert sequence) Q945X2 Q945X2_ORYSJ LOC_Os11g37730 Os11g0588300 OsJ_34497 OSNPB_110588300 ENOG411DUJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chitinase Chitinase 2, putative, expressed (Class III chitinase RCB4) (EC 3.2.1.14) (Os10g0416100 protein) (cDNA clone:J023093F02, full insert sequence),Os10g0416100 protein Q9AT30,A0A0P0XUN5 Q9AT30_ORYSJ,A0A0P0XUN5_ORYSJ Rcb4 LOC_Os10g28050 Os10g0416100 OsJ_31523 OSNPB_100416100,Os10g0416100 OSNPB_100416100 ENOG411EA0C T7M13.15 Q9SG83,F4J4X8 Q9SG83_ARATH,F4J4X8_ARATH Single-stranded nucleic acid binding R3H protein (T7M13.15 protein) (Uncharacterized protein At3g10770),Single-stranded nucleic acid binding R3H protein 37534,36570 Single-stranded nucleic acid binding R3H protein (T7M13.15 protein) (Uncharacterized protein At3g10770),Single-stranded nucleic acid binding R3H protein nucleic acid binding [GO:0003676] locus:2103237; AT3G10770 Nucleic acid binding NA NA NA NA NA NA NA ENOG411ECSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411ECSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins (By similarity) NA NA NA NA NA NA NA ENOG411ECSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transporting ATPase C-terminus NA NA NA NA NA NA NA ENOG411ECSS NAC005,NAC004,NAC003,NAC048 O81914,O81913,Q5PP28,Q8W4R4,Q9M846,F4J3P3 NAC5_ARATH,NAC4_ARATH,NAC3_ARATH,Q8W4R4_ARATH,Q9M846_ARATH,F4J3P3_ARATH NAC domain-containing protein 5 (ANAC005),NAC domain-containing protein 4 (ANAC004),NAC domain-containing protein 3 (ANAC003),At3g04420/T27C4_6 (NAC domain containing protein 48),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (T27C4.5 protein),NAC domain containing protein 48 40802,40896,45153,39038,8726,33518 NAC domain-containing protein 5 (ANAC005),NAC domain-containing protein 4 (ANAC004),NAC domain-containing protein 3 (ANAC003),At3g04420/T27C4_6 (NAC domain containing protein 48),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (T27C4.5 protein),NAC domain containing protein 48 nucleus [GO:0005634]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351]; xylem development [GO:0010089],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2204853;,locus:2204783;,locus:2204833;,locus:2100845;,locus:2100835; AT1G02250,AT1G02230,AT1G02220,AT3G04420,AT3G04410 NAC domain containing protein NA NA NA NA NA NA NA ENOG411ECSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os09g0336950 protein,Os11g0198900 protein (cDNA, clone: J065168H08, full insert sequence),Os09g0294800 protein,Os11g0198682 protein,Os11g0199000 protein,Os09g0320801 protein,Os09g0331600 protein,Os09g0294901 protein B9G305,B7F8U7,A0A0P0XKI1,A0A0P0Y0C4,A0A0P0XZN9,A0A0P0XL59,A0A0P0XLJ7,A0A0N7KQI4 B9G305_ORYSJ,B7F8U7_ORYSJ,A0A0P0XKI1_ORYSJ,A0A0P0Y0C4_ORYSJ,A0A0P0XZN9_ORYSJ,A0A0P0XL59_ORYSJ,A0A0P0XLJ7_ORYSJ,A0A0N7KQI4_ORYSJ Os09g0336950 OsJ_28947 OSNPB_090336950,Os11g0198900 OSNPB_110198900,Os09g0294800 OSNPB_090294800,Os11g0198682 OSNPB_110198682,Os11g0199000 OSNPB_110199000,Os09g0320801 OSNPB_090320801,Os09g0331600 OSNPB_090331600,Os09g0294901 OSNPB_090294901 ENOG411ECSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411ECSA C7A10.130 Q9SW65 Q9SW65_ARATH Photosystem II manganese-stabilising protein (PsbO) family (Photosystem II oxygen-evolving complex like protein) (Photosystem II oxygen-evolving complex like protein (Partial)) 15686 Photosystem II manganese-stabilising protein (PsbO) family (Photosystem II oxygen-evolving complex like protein) (Photosystem II oxygen-evolving complex like protein (Partial)) extrinsic component of membrane [GO:0019898]; integral component of membrane [GO:0016021]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979]; photosystem II stabilization [GO:0042549] locus:2114975; AT4G37230 Manganese-stabilising protein / photosystem II polypeptide NA NA NA NA NA NA NA ENOG411EMEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AhpC/TSA family NA NA NA NA NA NA NA ENOG411EMET LRR-RLK O49654,A0A1P8B4A0 O49654_ARATH,A0A1P8B4A0_ARATH At4g22730 (Leucine rich repeat receptor kinase-like protein) (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase),Leucine-rich repeat protein kinase family protein 75861,58238 At4g22730 (Leucine rich repeat receptor kinase-like protein) (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2132634; AT4G22730 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EMEV BPA1 Q9LFD5 BPA1_ARATH Binding partner of ACD11 1 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000305|PubMed:18845362}. 27234 Binding partner of ACD11 1 cytoplasm [GO:0005737]; membrane [GO:0016020]; RNA binding [GO:0003723]; response to cytokinin [GO:0009735] locus:2148970; AT5G16840 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMEQ Q9FPI7,F4JR84 Q9FPI7_ARATH,F4JR84_ARATH AT4g37020 (Initiation factor 4A-like protein) (Uncharacterized protein At4g37020),Initiation factor 4A-like protein 23411,29019 AT4g37020 (Initiation factor 4A-like protein) (Uncharacterized protein At4g37020),Initiation factor 4A-like protein translation initiation factor activity [GO:0003743],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP-dependent RNA helicase activity [GO:0004004]; translation initiation factor activity [GO:0003743]; RNA secondary structure unwinding [GO:0010501] locus:2115184; AT4G37020 NA Expressed protein (Os10g0388900 protein) (cDNA clone:J033057B06, full insert sequence) Q338P9 Q338P9_ORYSJ LOC_Os10g25000 Os10g0388900 OSNPB_100388900 ENOG411EMEP DXPS3 Q0WUB4,Q9LFL9,A0A1P8BHL8,A0A1R7T385 Q0WUB4_ARATH,Q9LFL9_ARATH,A0A1P8BHL8_ARATH,A0A1R7T385_ARATH 1-D-deoxyxylulose 5-phosphate synthase-like protein (1-deoxy-D-xylulose 5-phosphate synthase 3),1-deoxy-D-xylulose 5-phosphate synthase 3 ARA:AT5G11380-MONOMER; 62263,76642,64955,63147 1-D-deoxyxylulose 5-phosphate synthase-like protein (1-deoxy-D-xylulose 5-phosphate synthase 3),1-deoxy-D-xylulose 5-phosphate synthase 3 1-deoxy-D-xylulose-5-phosphate synthase activity [GO:0008661]; terpenoid biosynthetic process [GO:0016114] locus:2148047; AT5G11380 synthase Os06g0142900 protein,Os06g0142900 protein (Fragment) A0A0P0WSV0,A0A0P0WS74 A0A0P0WSV0_ORYSJ,A0A0P0WS74_ORYSJ Os06g0142900 OSNPB_060142900 ENOG411EMES Q8LG39 Q8LG39_ARATH At1g31335 (Transmembrane protein) 7415 At1g31335 (Transmembrane protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:505006161; AT1G31335 NA Os03g0780200 protein Q8S7G9 Q8S7G9_ORYSJ OSJNBa0010I09.5 LOC_Os03g56782 Os03g0780200 OsJ_12805 OSNPB_030780200 ENOG411EMER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACT domain NA NA NA NA NA NA NA ENOG411EMEN DXS,DXPS1 Q38854,A0A1I9LTC7,F4IXL8,F4IXL7 DXS_ARATH,A0A1I9LTC7_ARATH,F4IXL8_ARATH,F4IXL7_ARATH 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (EC 2.2.1.7) (Protein CLOROPLASTOS ALTERADOS 1),1-deoxy-D-xylulose 5-phosphate synthase 1 DISRUPTION PHENOTYPE: Albino phenotype and seedling lethal when homozygous. The phenotype is caused by an early arrest in chloroplast differentiation. {ECO:0000269|PubMed:10982425, ECO:0000269|PubMed:12447549, ECO:0000269|PubMed:8653115}. Albino phenotype.,Lethal mutation when grown on soil (seed stocks are maintained as heterozygotes).,Mutant seeds grown on medium supplemented with non-phosphorylated synthetic 1-deoxy-D-xylulose (DX) develop green leaves. Seedling lethal (inferred from pigment defect)-P. Mandel-1996 FUNCTION: Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development. {ECO:0000269|PubMed:10982425, ECO:0000269|PubMed:11264287, ECO:0000269|PubMed:8653115}. MISCELLANEOUS: Plants over-expressing CLA1 show increased levels of plastid isoprenoids derived from the methylerythritol 4-phosphate (MEP) pathway, such as chlorophylls, tocopherols, carotenoids, abscisic acid, and gibberellin (PubMed:11264287). Mutant plants treated with exogenous mevalonic acid partially recover chlorophyll accumulation and plastid development (PubMed:12447549). {ECO:0000305|PubMed:11264287, ECO:0000305|PubMed:12447549}. PATHWAY: Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1. ARA:AT4G15560-MONOMER;MetaCyc:AT4G15560-MONOMER; 2.2.1.7; 2.2.1.7 76833,73751,69771,69714 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (EC 2.2.1.7) (Protein CLOROPLASTOS ALTERADOS 1),1-deoxy-D-xylulose 5-phosphate synthase 1 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 1-deoxy-D-xylulose-5-phosphate synthase activity [GO:0008661]; metal ion binding [GO:0046872]; 1-deoxy-D-xylulose 5-phosphate biosynthetic process [GO:0052865]; chlorophyll biosynthetic process [GO:0015995]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288]; terpenoid biosynthetic process [GO:0016114]; thiamine biosynthetic process [GO:0009228],1-deoxy-D-xylulose-5-phosphate synthase activity [GO:0008661]; terpenoid biosynthetic process [GO:0016114],chloroplast [GO:0009507]; 1-deoxy-D-xylulose-5-phosphate synthase activity [GO:0008661]; terpenoid biosynthetic process [GO:0016114] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10982425}. locus:2130374;,locus:2089885; AT4G15560,AT3G21500 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (EC 2.2.1.7) O22567 DXS1_ORYSJ CLA1 Os05g0408900 LOC_Os05g33840 OSJNBb0014K18.8 P0040B10.17 FUNCTION: Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development (By similarity). {ECO:0000250}. ENOG411EMEI AP22.32 Q9ZPW5,F4JQE9 Q9ZPW5_ARATH,F4JQE9_ARATH AAA-type ATPase family protein (Putative AAA-type ATPase),AAA-type ATPase family protein R-ATH-6798695; 71194,71007 AAA-type ATPase family protein (Putative AAA-type ATPase),AAA-type ATPase family protein mitochondrion [GO:0005739]; ATP binding [GO:0005524],ATP binding [GO:0005524]; zinc ion binding [GO:0008270] locus:2062170;,locus:2115285; AT2G18330,AT4G36580 ATPase family NA NA NA NA NA NA NA ENOG411EMEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0427900 protein (Putative transcriptional coactivator(DIP2)),Os08g0427900 protein Q7EY69,A0A0P0XFU6 Q7EY69_ORYSJ,A0A0P0XFU6_ORYSJ Os08g0427900 OJ1663_D06.13 OSJNBb0032E15.120 OSNPB_080427900,Os08g0427900 OSNPB_080427900 ENOG411EMEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3523) NA NA NA NA NA NA NA ENOG411EMEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HELICc NA NA NA NA NA NA NA ENOG411EMEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EME9 Q8H1Q4 Q8H1Q4_ARATH Leucine-rich repeat family protein (Uncharacterized protein At1g15740) 63888 Leucine-rich repeat family protein (Uncharacterized protein At1g15740) locus:2036199; AT1G15740 F-box LRR-repeat protein Leucine-rich repeat-like protein (Os02g0613200 protein) (cDNA clone:J013091J20, full insert sequence),Os04g0503500 protein (cDNA clone:J013001H05, full insert sequence) (cDNA clone:J033060B12, full insert sequence),Os02g0613200 protein (Fragment) Q6K620,Q0JBY3,A0A0N7KFN8 Q6K620_ORYSJ,Q0JBY3_ORYSJ,A0A0N7KFN8_ORYSJ Os02g0613200 Os02g0613200 OJ1004_A05.39 OsJ_07510 OSNPB_020613200,Os04g0503500 Os04g0503500 OsJ_15365 OSNPB_040503500,Os02g0613200 OSNPB_020613200 ENOG411EME5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EIN3-binding F-box protein NA NA NA NA NA NA NA ENOG411EME4 Q8LB33 FB330_ARATH F-box protein At3g58530 39733 F-box protein At3g58530 cytosol [GO:0005829] locus:2076376; AT3G58530 F-box protein Os02g0281150 protein (Fragment) A0A0P0VHR8 A0A0P0VHR8_ORYSJ Os02g0281150 OSNPB_020281150 ENOG411EME7 FBL8 Q9S9X4,Q9C626 FBL8_ARATH,FB37_ARATH Putative F-box/LRR-repeat protein 8,F-box protein At1g47056 Defects in lateral root formation delayed root elongation and delayed plant growth. Reduced cell size. 61005,56497 Putative F-box/LRR-repeat protein 8,F-box protein At1g47056 ubiquitin-protein transferase activity [GO:0004842] locus:2124372;,locus:2825736; AT4G07400,AT1G47056 F-Box protein Os09g0113000 protein (Fragment) Q0J3H2 Q0J3H2_ORYSJ Os09g0113000 Os09g0113000 OSNPB_090113000 ENOG411EME6 FBL14 Q3EC97 FBL14_ARATH F-box/LRR-repeat protein 14 53598 F-box/LRR-repeat protein 14 locus:2198883; AT1G80570 F-box LRR-repeat protein OSJNBb0076A22.1 protein (Os04g0370600 protein) (cDNA clone:J033148N10, full insert sequence),Os04g0370300 protein,Os04g0371600 protein (cDNA, clone: J065038H08, full insert sequence),OSJNBb0042I07.14 protein (Os04g0370500 protein) Q0JDW0,C7J166,Q0JDV7,Q7XVD7 Q0JDW0_ORYSJ,C7J166_ORYSJ,Q0JDV7_ORYSJ,Q7XVD7_ORYSJ Os04g0370600 Os04g0370600 OsJ_14460 OSJNBb0076A22.1 OSNPB_040370600,Os04g0370300 Os04g0370300 OSNPB_040370300,Os04g0371600 Os04g0371600 OSNPB_040371600,Os04g0370500 OsJ_14459 OSJNBb0042I07.14 OSNPB_040370500 ENOG411EME1 FBW2 Q9ZPE4 FBW2_ARATH F-box protein FBW2 (SKP1-interacting partner 18) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 36483 F-box protein FBW2 (SKP1-interacting partner 18) nucleus [GO:0005634]; negative regulation of gene expression [GO:0010629]; posttranscriptional regulation of gene expression [GO:0010608]; protein ubiquitination [GO:0016567]; response to abscisic acid [GO:0009737] locus:2122308; AT4G08980 NA Os02g0757700 protein (Fragment) A0A0P0VPZ4 A0A0P0VPZ4_ORYSJ Os02g0757700 OSNPB_020757700 ENOG411EME0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411EME3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR Os02g0759700 protein (Putative F-box containing protein TIR1),Os02g0759700 protein (Fragment) Q6K8E2,A0A0P0VQ14,A0A0P0VPT3,A0A0P0VPP3 Q6K8E2_ORYSJ,A0A0P0VQ14_ORYSJ,A0A0P0VPT3_ORYSJ,A0A0P0VPP3_ORYSJ Os02g0759700 Os02g0759700 OJ1175_B01.8-1 OsJ_08461 OSNPB_020759700,Os02g0759700 OSNPB_020759700 ENOG411EME2 ATB Q9ZWC6 ATB_ARATH F-box protein At-B 66260 F-box protein At-B locus:2020477; AT1G55590 LRR Os08g0499900 protein A0A0P0XHC7 A0A0P0XHC7_ORYSJ Os08g0499900 OSNPB_080499900 ENOG411ECSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NA NA NA NA NA NA NA ENOG411ECSM FRL2 Q9C6S2 FRL2I_ARATH Inactive FRIGIDA-like protein 2 (AtFRL2) DISRUPTION PHENOTYPE: No effect on flowering time, due to a partial redundancy with FRL1. Frl1 and frl2 double mutants flower earlier than frl1 single mutant. {ECO:0000269|PubMed:14973192}. FUNCTION: Inactive FIRGIDA-like 2 protein. {ECO:0000269|PubMed:14973192, ECO:0000269|PubMed:17056759}. MISCELLANEOUS: In cv. Columbia and cv. Landsberg erecta, either FRL1 or FRL2, but not both, is functional and required for FRI-mediated up-regulation of FLC (PubMed:17056759). {ECO:0000305|PubMed:17056759}. 52864 Inactive FRIGIDA-like protein 2 (AtFRL2) cell differentiation [GO:0030154]; flower development [GO:0009908]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed at low levels throughout the plant, with slightly higher expression in developing seeds and the highest expression in pollen. {ECO:0000269|PubMed:20405310}. locus:2826175; AT1G31814 Frigida-like protein NA NA NA NA NA NA NA ENOG411ECSI SDR4,SDR5,SDR3c,SDR3a F4J2Z7,F4J300,O80714,O80713,O80711,A0A1P8B317 SDR4_ARATH,SDR5_ARATH,SDR3C_ARATH,SDR3A_ARATH,O80711_ARATH,A0A1P8B317_ARATH Short-chain dehydrogenase reductase 4 (AtSDR4) (EC 1.1.1.-),Short-chain dehydrogenase reductase 5 (AtSDR5) (EC 1.1.1.-),Short-chain dehydrogenase reductase 3c (AtSDR3c) (EC 1.1.1.-),Short-chain dehydrogenase reductase 3a (AtSDR3a) (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein (Putative alcohol dehydrogenase),NAD(P)-binding Rossmann-fold superfamily protein DISRUPTION PHENOTYPE: No phenotype regarding abiotic stresses. Enhanced susceptibility to the incompatible pathogenic bacteria Pseudomonas syringae pv. tomato DC3000. {ECO:0000269|PubMed:22153241}. FUNCTION: Confers resistance to the incompatible pathogenic bacteria P.syringae pv. tomato DC3000 in a PR1-dependent manner. Seems not involved in abscisic acid (ABA) biosynthesis. {ECO:0000269|PubMed:22153241}. ARA:AT2G47120-MONOMER;,ARA:AT2G47130-MONOMER; R-ATH-77111; 1.1.1.- 31803,26925,27259,26901,21536,27346 Short-chain dehydrogenase reductase 4 (AtSDR4) (EC 1.1.1.-),Short-chain dehydrogenase reductase 5 (AtSDR5) (EC 1.1.1.-),Short-chain dehydrogenase reductase 3c (AtSDR3c) (EC 1.1.1.-),Short-chain dehydrogenase reductase 3a (AtSDR3a) (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein (Putative alcohol dehydrogenase),NAD(P)-binding Rossmann-fold superfamily protein copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626] TISSUE SPECIFICITY: Highly expressed in the radicle tip, lateral root primordia and tips, and the area surrounding the cotyledon hydathode of young seedlings. {ECO:0000269|PubMed:22153241}. locus:2094807;,locus:2094822;,locus:2041449;,locus:2041439;,locus:2041349; AT3G29250,AT3G29260,AT2G47120,AT2G47130,AT2G47150 KR domain NA NA NA NA NA NA NA ENOG411EJWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribulose bisphosphate carboxylase large chain catalytic domain NA NA NA NA NA NA NA ENOG411EDU0 Q9SU82 Q9SU82_ARATH Alkaline-phosphatase-like family protein (Nucleotide pyrophosphatase-like protein) (EC 3.6.1.9) ARA:AT4G29690-MONOMER; R-ATH-1660662;R-ATH-196843;R-ATH-6798695;R-ATH-6814848; 3.6.1.9 51261 Alkaline-phosphatase-like family protein (Nucleotide pyrophosphatase-like protein) (EC 3.6.1.9) NADH pyrophosphatase activity [GO:0035529]; metabolic process [GO:0008152] locus:2134343; AT4G29690 type I phosphodiesterase nucleotide pyrophosphatase family protein NA NA NA NA NA NA NA ENOG411EDU1 SCL31,SCL34 Q3EDH0,P0C884,A0A1P8AT66,A0A1P8AT25 SCL31_ARATH,SCL34_ARATH,A0A1P8AT66_ARATH,A0A1P8AT25_ARATH Scarecrow-like protein 31 (AtSCL31) (GRAS family protein 1) (AtGRAS-1),Scarecrow-like protein 34 (AtSCL34) (GRAS family protein 12) (AtGRAS-12),GRAS family transcription factor FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 79251,72529,61097,79383 Scarecrow-like protein 31 (AtSCL31) (GRAS family protein 1) (AtGRAS-1),Scarecrow-like protein 34 (AtSCL34) (GRAS family protein 12) (AtGRAS-12),GRAS family transcription factor nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}. locus:2025032;,locus:6530298185; AT1G07520,AT2G29065 GRAS domain family NA NA NA NA NA NA NA ENOG411EDU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain OSJNBa0027H06.10 protein (Os04g0109400 protein),OSJNBa0027H06.9 protein (Os04g0109100 protein) (cDNA clone:J013044A22, full insert sequence),Os03g0379000 protein Q7XSW3,Q7XXF5,A0A0P0VYU6 Q7XSW3_ORYSJ,Q7XXF5_ORYSJ,A0A0P0VYU6_ORYSJ OSJNBa0027H06.10 Os04g0109400 OSNPB_040109400,Os04g0109100 OSJNBa0027H06.9 OSNPB_040109100,Os03g0379000 OSNPB_030379000 ENOG411EDU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion transport protein NA NA NA NA NA NA NA ENOG411EDU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDU6 Q93VW7,Q9LJR0,A0A1P8API0 Q93VW7_ARATH,Q9LJR0_ARATH,A0A1P8API0_ARATH At1g53031 (Transmembrane protein) (Uncharacterized protein At1g53035/F8L10.23),Transmembrane protein (Uncharacterized protein At3g15348),Transmembrane protein 17022,16512,17930 At1g53031 (Transmembrane protein) (Uncharacterized protein At1g53035/F8L10.23),Transmembrane protein (Uncharacterized protein At3g15348),Transmembrane protein integral component of membrane [GO:0016021] locus:505006180;,locus:1006230226; AT1G53035,AT3G15358 NA NA NA NA NA NA NA NA ENOG411EDU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EDU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EDU9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411EDUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF298 NA NA NA NA NA NA NA ENOG411EDUQ Q9SJ29,O22890,Q9LV63,O81432,Q9LRQ1,O22891,A0A1P8AX20 Y2533_ARATH,Y2045_ARATH,Y5851_ARATH,Y4409_ARATH,Y3974_ARATH,Y2044_ARATH,A0A1P8AX20_ARATH Putative BTB/POZ domain-containing protein At2g05330,Putative BTB/POZ domain-containing protein At2g40450,BTB/POZ domain-containing protein At5g48510,Putative BTB/POZ domain-containing protein At4g04090,Putative BTB/POZ domain-containing protein At3g29740,Putative BTB/POZ domain-containing protein At2g40440,BTB/POZ domain-containing protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. PATHWAY: Protein modification; protein ubiquitination. 24483,23504,24997,21842,9609,18683,19388 Putative BTB/POZ domain-containing protein At2g05330,Putative BTB/POZ domain-containing protein At2g40450,BTB/POZ domain-containing protein At5g48510,Putative BTB/POZ domain-containing protein At4g04090,Putative BTB/POZ domain-containing protein At3g29740,Putative BTB/POZ domain-containing protein At2g40440,BTB/POZ domain-containing protein cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162],protein ubiquitination [GO:0016567] locus:2051294;,locus:2061873;,locus:2166066;,locus:2136622;,locus:2091783; AT2G05330,AT2G40450,AT5G48510,AT4G04090,AT3G29740,AT2G40440 BTB/POZ domain NA NA NA NA NA NA NA ENOG411EDUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6EQJ7 Q6EQJ7_ORYSJ prx25 Os02g0237000 OJ1077_A12.29 OSJNBb0006L10.4 OSNPB_020237000 ENOG411EDUS LSH1,LSH2 Q6NNI3,Q9M836 LSH1_ARATH,LSH2_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (Protein ORGAN BOUNDARY 2),Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 (Protein ORGAN BOUNDARY 3) Plants exhibit shorter hypocotyls and larger cotyledons under continuous white red blue and far-red light. They also have shorter rosette petioles compared to wild type. Hypocotyl cells in the mutant plants are shorter than those of wild type plants. FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to continuous red (cR), far-red (cFR) and blue (cB) light in a phytochrome-dependent manner, at least during seedling development. {ECO:0000269|PubMed:14871309}.,FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. 21653,22774 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (Protein ORGAN BOUNDARY 2),Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 (Protein ORGAN BOUNDARY 3) nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to light stimulus [GO:0009416]; response to red light [GO:0010114]; unidimensional cell growth [GO:0009826],nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in hypocotyls, shoot apices and lateral root primordia and, weakly, in vascular tissues. {ECO:0000269|PubMed:14871309}. locus:2147494;,locus:2100850; AT5G28490,AT3G04510 light sensitive hypocotyls 2 NA NA NA NA NA NA NA ENOG411EDUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:FAE_3-kCoA_syn1 NA NA NA NA NA NA NA ENOG411EDUU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) Os02g0241300 protein (cDNA clone:J023115O03, full insert sequence),Os11g0451051 protein (Fragment) Q6ER40,A0A0P0Y2C9 Q6ER40_ORYSJ,A0A0P0Y2C9_ORYSJ Os02g0241300 Os02g0241300 OSJNBa0082C09.25 OSNPB_020241300,Os11g0451051 OSNPB_110451051 ENOG411EDUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: domain protein NA NA NA NA NA NA NA ENOG411EDUW MIK19.15 Q9FF58,Q9FJU2,A0A1P8BG89 FBD30_ARATH,FBD37_ARATH,A0A1P8BG89_ARATH FBD-associated F-box protein At5g60610,Putative FBD-associated F-box protein At5g56700,FBD / Leucine Rich Repeat domains containing protein 44953,45842,41502 FBD-associated F-box protein At5g60610,Putative FBD-associated F-box protein At5g56700,FBD / Leucine Rich Repeat domains containing protein locus:2175861;,locus:2165036; AT5G60610,AT5G56700 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EDUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutamate receptor Os06g0188600 protein (Putative glutamate receptor 2.5),Avr9/Cf-9 rapidly elicited protein-like (Os06g0189100 protein),Avr9/Cf-9 rapidly elicited protein-like (Os06g0188700 protein) Q69KL2,Q69KK7,Q69KL0 Q69KL2_ORYSJ,Q69KK7_ORYSJ,Q69KL0_ORYSJ Os06g0188600 OSJNBb0005A05.24 OSNPB_060188600 P0470C02.35,Os06g0189100 OsJ_20401 OSJNBb0005A05.31 OSNPB_060189100,Os06g0188700 OSJNBb0005A05.27 OSNPB_060188700 P0470C02.38 ENOG411EDUY A0A1P8B1Z7,A0A1P8B1W5,Q7X8U5,A0A1P8B1X2,A0A1P8B1U9,A0A1P8B1X9,A0A1P8B1V7,A0A1P8B1V4,A0A1P8B1V0,F4IFL9,F4IFM0,F4IFM1 A0A1P8B1Z7_ARATH,A0A1P8B1W5_ARATH,Q7X8U5_ARATH,A0A1P8B1X2_ARATH,A0A1P8B1U9_ARATH,A0A1P8B1X9_ARATH,A0A1P8B1V7_ARATH,A0A1P8B1V4_ARATH,A0A1P8B1V0_ARATH,F4IFL9_ARATH,F4IFM0_ARATH,F4IFM1_ARATH Phospholipase-like protein (PEARLI 4) family protein,Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein At2g20950) 43829,58102,59570,54728,54486,53991,47444,62510,62944,57869,59811,57628 Phospholipase-like protein (PEARLI 4) family protein,Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein At2g20950) chromatin binding [GO:0003682]; mitotic sister chromatid cohesion [GO:0007064]; regulation of gene expression [GO:0010468] locus:2046992; AT2G20950 Has 618 Blast hits to 562 proteins in 105 species Archae - 7 NA NA NA NA NA NA NA ENOG411EDUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-5 cytosine-specific DNA methylase NA NA NA NA NA NA NA ENOG411EDUA ATL70 Q8RX29 ATL70_ARATH RING-H2 finger protein ATL70 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL70) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 23881 RING-H2 finger protein ATL70 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL70) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2039170; AT2G35910 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EDUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EDUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os09g0518400 protein A0A0P0XPX2 A0A0P0XPX2_ORYSJ Os09g0518400 OSNPB_090518400 ENOG411EDUE MNC6.8 Q9FJC9 Q9FJC9_ARATH 26S proteasome regulatory particle chain RPT6-like protein (AT5g53540/MNC6_8) (P-loop containing nucleoside triphosphate hydrolases superfamily protein) ARA:AT5G53540-MONOMER; 44848 26S proteasome regulatory particle chain RPT6-like protein (AT5g53540/MNC6_8) (P-loop containing nucleoside triphosphate hydrolases superfamily protein) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; reactive oxygen species metabolic process [GO:0072593] locus:2168646; AT5G53540 Bacterial dnaA protein NA NA NA NA NA NA NA ENOG411EDUF Q9C6Z8 Q9C6Z8_ARATH Uncharacterized protein T2H7.3 41531 Uncharacterized protein T2H7.3 locus:2202497; AT1G30170 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EDUG UGT76D1 O48715 U76D1_ARATH UDP-glycosyltransferase 76D1 (EC 2.4.1.-) FUNCTION: Possesses low quercetin 7-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}. ARA:AT2G26480-MONOMER; 2.4.1.- 51170 UDP-glycosyltransferase 76D1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2066261; AT2G26480 UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EDUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PBPe NA NA NA NA NA NA NA ENOG411EDUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411EDUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0703700 protein Q75IA2 Q75IA2_ORYSJ OSJNBa0004L11.8 Os03g0703700 LOC_Os03g49680 OsJ_12266 OSNPB_030703700 ENOG411EDUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411EDUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQTR OR23 Q0V7S6 FK125_ARATH F-box/kelch-repeat protein OR23 49971 F-box/kelch-repeat protein OR23 Cul3-RING ubiquitin ligase complex [GO:0031463]; protein ubiquitination [GO:0016567] locus:2139350; AT4G03030 F-box kelch-repeat protein Kelch repeat containing F-box protein family-like (Os02g0316200 protein) (cDNA clone:J033076K03, full insert sequence),Os03g0196450 protein (Fragment) Q6Z856,A0A0P0VU87 Q6Z856_ORYSJ,A0A0P0VU87_ORYSJ Os02g0316200 OsJ_01302 OSNPB_020316200 P0572D06.16,Os03g0196450 OSNPB_030196450 ENOG411E9I0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E5R0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5R1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kinesin family member NA NA NA NA NA NA NA ENOG411E5R2 F4HS13 F4HS13_ARATH AT-rich interactive domain protein 21109 AT-rich interactive domain protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:504956229; AT1G73885 NA Expressed protein (Os03g0710600 protein) (cDNA clone:J013161N21, full insert sequence) Q53RJ7 Q53RJ7_ORYSJ Os03g0710600 LOC_Os03g50270 Os03g0710600 OSNPB_030710600 ENOG411E5R3 HMGA Q43386 HMGYA_ARATH HMG-Y-related protein A (AtHMGA) (High mobility group A protein) FUNCTION: Binds A/T-rich DNA with a highly dynamic distribution into the nucleus. {ECO:0000269|PubMed:17114349}. 22011 HMG-Y-related protein A (AtHMGA) (High mobility group A protein) nucleolus [GO:0005730]; nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; nucleosome assembly [GO:0006334]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Mostly expressed in flowers (especially in styles and filaments, and, at lower levels, in sepals and ovaries) and developing siliques, and, to a lower extent, in leaves, cotyledons, lateral roots and root tips. {ECO:0000269|PubMed:17316617, ECO:0000269|PubMed:9225863}. locus:2006862; AT1G14900 HMG-Y-related protein A-like NA NA NA NA NA NA NA ENOG411E5R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 OSJNBb0034G17.6 protein (Os04g0550200 protein) (Transcription factor) (cDNA clone:002-143-E08, full insert sequence),Os02g0657000 protein (Putative AP2 domain-containing protein) (Putative DRE binding factor 2) (cDNA clone:002-151-G03, full insert sequence) Q7XU26,Q6H6G4 Q7XU26_ORYSJ,Q6H6G4_ORYSJ Os04g0550200 Os04g0550200 OSJNBb0034G17.6 OSNPB_040550200,Os02g0657000 Os02g0657000 OJ1112_F09.1 OSNPB_020657000 P0519E06.31 ENOG411E5R6 PMD2 Q9SHJ6 PMD2_ARATH Peroxisomal and mitochondrial division factor 2 (Ubiquitin-interacting factor 7) FUNCTION: Involved in morphogenesis and proliferation of mitochondria. Does not act redundantly with PMD1. Is not involved in peroxisomal proliferation. {ECO:0000269|PubMed:22147290}. MISCELLANEOUS: Plant cells silencing PMD2 show enlarged mitochondria. {ECO:0000269|PubMed:22147290}. 36119 Peroxisomal and mitochondrial division factor 2 (Ubiquitin-interacting factor 7) integral component of mitochondrial outer membrane [GO:0031307]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; mitochondrion organization [GO:0007005] locus:2009215; AT1G06530 NA NA NA NA NA NA NA NA ENOG411E5R7 T4C21_100 Q9LZZ4 Q9LZZ4_ARATH AT3g60690/T4C21_100 (SAUR-like auxin-responsive protein family) (Uncharacterized protein T4C21_100) 19785 AT3g60690/T4C21_100 (SAUR-like auxin-responsive protein family) (Uncharacterized protein T4C21_100) response to auxin [GO:0009733] locus:2101771; AT3G60690 auxin-responsive NA NA NA NA NA NA NA ENOG411E5R8 Q949T9 Q949T9_ARATH CCT motif family protein (Uncharacterized protein At5g14370) 38277 CCT motif family protein (Uncharacterized protein At5g14370) nucleus [GO:0005634] locus:2145698; AT5G14370 CCT motif NA NA NA NA NA NA NA ENOG411E5R9 MNF13.25 Q9FM29 Q9FM29_ARATH At5g40690 (Dbj|BAA95711.1) (Histone-lysine N-methyltransferase trithorax-like protein) 23570 At5g40690 (Dbj|BAA95711.1) (Histone-lysine N-methyltransferase trithorax-like protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; methyltransferase activity [GO:0008168] locus:2168753; AT5G40690 NA NA NA NA NA NA NA NA ENOG411E5RA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0016O02.5 protein (Os04g0467000 protein) (cDNA clone:J033011D19, full insert sequence) Q7XJW5 Q7XJW5_ORYSJ Os04g0467000 OsJ_15111 OSJNBa0016O02.5 OSNPB_040467000 ENOG411E5RB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S21 Os08g0121800 protein (cDNA clone:002-170-A06, full insert sequence),Os08g0121400 protein Q6YRM7,Q6YRN2 Q6YRM7_ORYSJ,Q6YRN2_ORYSJ OSJNBa0091F23.16 Os08g0121800 B1203H11.31 OsJ_25864 OSJNBa0073J19.8 OSNPB_080121800,OSJNBa0091F23.9 Os08g0121400 B1203H11.24 OsJ_25860 OSJNBa0073J19.1 OSNPB_080121400 ENOG411E5RC F4KF27 MDA2_ARATH Mediator-associated protein 2 23328 Mediator-associated protein 2 mediator complex [GO:0016592]; nucleolus [GO:0005730] locus:2174834; AT5G64680 NA Os01g0259900 protein (Fragment),Os08g0422600 protein (Fragment) A0A0P0V0T0,A0A0N7KPV6 A0A0P0V0T0_ORYSJ,A0A0N7KPV6_ORYSJ Os01g0259900 OSNPB_010259900,Os08g0422600 OSNPB_080422600 ENOG411E5RD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM NA NA NA NA NA NA NA ENOG411E5RE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding protein Os09g0563950 protein,Os09g0565150 protein Q650Y6,A0A0P0XQK8 Q650Y6_ORYSJ,A0A0P0XQK8_ORYSJ Os09g0563950 Os09g0563950 OSJNBa0042B15.9 OSNPB_090563950,Os09g0565150 OSNPB_090565150 ENOG411E5RF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger Os03g0619151 protein A0A0P0W0V5 A0A0P0W0V5_ORYSJ Os03g0619151 OSNPB_030619151 ENOG411E5RG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Os01g0931600 protein Q5JMI3 Q5JMI3_ORYSJ Os01g0931600 OsJ_04651 OSNPB_010931600 P0506E04.21 ENOG411E5RH DBR4 Q8H1D4 DRB4_ARATH Double-stranded RNA-binding protein 4 (dsRNA-binding protein 4) (AtDRB4) DISRUPTION PHENOTYPE: Elongated and downwardly curled rosette leaves. In old plants, rosette and cauline leaves and flowers change to red color. Increased levels of ARF3 and ARF4 transcripts, targeted by TAS1 and TAS3, respectively. {ECO:0000269|PubMed:17221360, ECO:0000269|PubMed:18625233}. Downward-curled leaf margins.,In leaves TAS3 ta-siRNAs were below detectable levels whereas TAS1 and TAS2 ta-siRNAs were detectable. By contrast in flowers levels of TAS3 ta-siRNA remained unchanged whereas levels of TAS1 and TAS2 ta-siRNAs were reduced. Downward-bending leaf margins-H. Vaucheret-2006 FUNCTION: Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the trans-acting small interfering RNAs (ta-siRNAs) biogenesis by binding and assisting DICER-LIKE 4 (DCL4). Required for DCL4 activity. Required for the 21 nucleotide ta-siRNAs production of the TAS3 transcript in leaves but not in flowers. Plays an important role in silencing RNA of both DNA and RNA viruses. Involved with argonaute 7 (AGO7) and RDR6 in turnip crinkle virus (TCV) silencing. May not be directly involved in viral siRNA production. May stabilize the 21 nucleotide viral siRNAs and deliver them to the RISC complex. Targeted by the viral silencing suppressor (VSR) transactivator/viroplasmin (TAV) protein of the cauliflower mosaic virus (CaMV) that inactivates DRB4 function in RNA silencing. Probably not involved in the guide strand selection from RNA duplexes. Involved in leaf morphology through its function in ta-siRNA-mediated silencing. {ECO:0000269|PubMed:16682354, ECO:0000269|PubMed:17221360, ECO:0000269|PubMed:18625233, ECO:0000269|PubMed:18799732}. 38416 Double-stranded RNA-binding protein 4 (dsRNA-binding protein 4) (AtDRB4) nucleus [GO:0005634]; double-stranded RNA binding [GO:0003725]; defense response to virus [GO:0051607]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; production of ta-siRNAs involved in RNA interference [GO:0010267]; viral gene silencing in virus induced gene silencing [GO:0060145]; viral process [GO:0016032] TISSUE SPECIFICITY: Expressed in roots, leaf vasculature, shoot apical meristem (SAM) and developing anthers. {ECO:0000269|PubMed:18625233}. locus:2081620; AT3G62800 Double-stranded RNA binding motif NA NA NA NA NA NA NA ENOG411E5RI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family Os01g0122200 protein (cDNA clone:002-124-G03, full insert sequence),Os01g0123100 protein Q9ART8,A0A0P0UXJ6 Q9ART8_ORYSJ,A0A0P0UXJ6_ORYSJ Os01g0122200 OsJ_00187 OSNPB_010122200 P0445D12.10,Os01g0123100 OSNPB_010123100 ENOG411E5RJ Q56XJ7,A0A1P8B3L5 Y4276_ARATH,A0A1P8B3L5_ARATH Uncharacterized protein At4g22758,PPR containing protein 28545,21090 Uncharacterized protein At4g22758,PPR containing protein locus:6530298216; AT4G22758 Inherit from KOG: Pentatricopeptide repeat-containing protein Os02g0448600 protein (Fragment) Q0E1G8 Q0E1G8_ORYSJ Os02g0448600 Os02g0448600 OSNPB_020448600 ENOG411E5RK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0305200 protein) (cDNA clone:002-143-C08, full insert sequence) Q10MK8 Q10MK8_ORYSJ LOC_Os03g19260 Os03g0305200 OsJ_10549 OSNPB_030305200 ENOG411E5RM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAG domain NA NA NA NA NA NA NA ENOG411E5RN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0065O17.1 protein (OSJNBb0012E24.14 protein) (Os04g0556900 protein) (cDNA clone:002-101-H05, full insert sequence) Q7XPS9 Q7XPS9_ORYSJ Os04g0556900 OSJNBa0065O17.1 OSJNBb0012E24.14 OSNPB_040556900 ENOG411E5RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L35Ae NA NA NA NA NA NA NA ENOG411E5RQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os02g0660800 protein (Fragment) A0A0P0VMM7 A0A0P0VMM7_ORYSJ Os02g0660800 OSNPB_020660800 ENOG411E5RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0439000 protein (Fragment) Q0DQX3 Q0DQX3_ORYSJ Os03g0439000 Os03g0439000 OSNPB_030439000 ENOG411E5RS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DPBB_1 NA NA NA NA NA NA NA ENOG411E5RU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411E5RV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os01g0201500 protein A0A0P0UZF1 A0A0P0UZF1_ORYSJ Os01g0201500 OSNPB_010201500 ENOG411E5RW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0700300 protein (cDNA clone:J013127D12, full insert sequence) Q5Z846 Q5Z846_ORYSJ Os06g0700300 OSNPB_060700300 P0468G03.21 ENOG411E5RX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) OSJNBa0013K16.12 protein (Os04g0585700 protein) (cDNA clone:006-312-B04, full insert sequence) Q7XP55 Q7XP55_ORYSJ Os04g0585700 Os04g0585700 OsJ_15934 OSJNBa0013K16.12 OSNPB_040585700 ENOG411E5RY HIPP35 Q9C7J6 HIP35_ARATH Heavy metal-associated isoprenylated plant protein 35 (AtHIP35) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 39806 Heavy metal-associated isoprenylated plant protein 35 (AtHIP35) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2011841; AT1G56210 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E5RZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0591300 protein (cDNA clone:001-101-B07, full insert sequence) Q0JAL1 Q0JAL1_ORYSJ Os04g0591300 Os04g0591300 OSNPB_040591300 ENOG411EES4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridine nucleotide-disulphide oxidoreductase NA NA NA NA NA NA NA ENOG411E96W WRKY8 Q9FL26 WRKY8_ARATH Probable WRKY transcription factor 8 (WRKY DNA-binding protein 8) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:20367464, PubMed:23451802). Mutant plants show increased resistance to the bacterial pathogen P. syringae and enhanced susceptibility to the fungal pathogen to B. cinerea (PubMed:20367464). Mutant plants display increased sensitiviy to salt stress (PubMed:23451802). {ECO:0000269|PubMed:20367464, ECO:0000269|PubMed:23451802}. Resistant to Pseudomonas syringae; Susceptible to Botrytis cinerea-D. Yu-2010 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring stress-responsive cis-acting element. Functions as positive regulator of salt stress response. Binds the W box of LTI78/RD29A stress-response gene and directly regulates its transcription under salt stress. Functions antagonistically with VQ9 to regulate sodium and potassium homeostasis under salt stress by regulating the expression of downstream SOS (SALT OVERLY SENSITIVE) stress-responsive genes. The DNA-binding activity of WRKY8 is decreased by VQ9 (PubMed:23451802). Functions as negative regulator of basal resistance to the bacterial pathogen P. syringae and as positive regulator of resistance to the fungal pathogen to B. cinerea (PubMed:20367464). Functions as positive regulator of defense response againt tobamovirus (TMV) by regulating both the abscisic acid and ethylene signaling pathways. Positively regulates ABI4 expression and negatively modulates ACS6 and ERF104 expression by directly binding to the W box consensus motifs within their promoters (PubMed:23650359). {ECO:0000269|PubMed:20367464, ECO:0000269|PubMed:23451802, ECO:0000269|PubMed:23650359}. 37294 Probable WRKY transcription factor 8 (WRKY DNA-binding protein 8) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to hydrogen peroxide [GO:0070301]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to virus [GO:0051607]; positive regulation of response to salt stress [GO:1901002]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23451802}. locus:2170403; AT5G46350 WRKY NA NA NA NA NA NA NA ENOG411EC7Y Q9LXC6,A0A1P8BCE3 Q9LXC6_ARATH,A0A1P8BCE3_ARATH Gb|AAD14519.1 (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein F17I14_190),Octicosapeptide/Phox/Bem1p family protein 59660,55030 Gb|AAD14519.1 (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein F17I14_190),Octicosapeptide/Phox/Bem1p family protein locus:2144721; AT5G09620 PB1 NA NA NA NA NA NA NA ENOG411EC7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain NA NA NA NA NA NA NA ENOG411EC7Z TAR1 Q9LR29 TAR1_ARATH Tryptophan aminotransferase-related protein 1 (EC 2.6.1.27) (EC 2.6.1.99) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18394997}. This mutant does not have any obvious morphological defects and it responds normally to ACC and IAA in hypocotyl and root elongation assays.,These triple mutants do not make a primary root they have an extremely reduced hypocotyl and they lack discernible vasculature in their cotyledons. These mutants have a higher propensity to develop a single cotyledon than wild-type embryos. FUNCTION: Probably involved in auxin production. TAA1, TAR1 and TAR2 are required for proper embryo patterning. {ECO:0000269|PubMed:18394997}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. 2.6.1.27; 2.6.1.27; 2.6.1.99 44064 Tryptophan aminotransferase-related protein 1 (EC 2.6.1.27) (EC 2.6.1.99) cytoplasm [GO:0005737]; carbon-sulfur lyase activity [GO:0016846]; L-tryptophan:2-oxoglutarate aminotransferase activity [GO:0050362]; L-tryptophan:pyruvate aminotransferase activity [GO:0080097]; auxin biosynthetic process [GO:0009851] TISSUE SPECIFICITY: Very low expression in seedlings. {ECO:0000269|PubMed:18394997}. locus:2028010; AT1G23320 tryptophan aminotransferase related 1 NA NA NA NA NA NA NA ENOG411EC7I Q9FKZ2 DRL41_ARATH Probable disease resistance protein At5g66890 FUNCTION: Possible disease resistance protein. {ECO:0000250}. 47554 Probable disease resistance protein At5g66890 defense response [GO:0006952] locus:2175009; AT5G66890 NA NA NA NA NA NA NA NA ENOG411EC7G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411E48H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411E1KS Q9ASY3,A0A1P8BGB5,Q94CL1,A0A1P8BGD7,F4K151 Q9ASY3_ARATH,A0A1P8BGB5_ARATH,Q94CL1_ARATH,A0A1P8BGD7_ARATH,F4K151_ARATH AT5g19430/F7K24_180 (RING/U-box superfamily protein),RING/U-box superfamily protein,AT5g19430/F7K24_180 (Putative RING finger) (RING finger-like protein) (RING/U-box superfamily protein) 28396,28476,28487,21959,26893 AT5g19430/F7K24_180 (RING/U-box superfamily protein),RING/U-box superfamily protein,AT5g19430/F7K24_180 (Putative RING finger) (RING finger-like protein) (RING/U-box superfamily protein) metal ion binding [GO:0046872] locus:2150310;,locus:505006599; AT5G19430,AT5G12310 zinc finger Os01g0954400 protein (RING finger-like protein) (cDNA clone:J013039J02, full insert sequence) Q941Y7 Q941Y7_ORYSJ Os01g0954400 B1139B11.3 OSNPB_010954400 P0431G06.33 ENOG411E1KR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E1KQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family Os02g0727100 protein (Putative amino acid transporter) (cDNA clone:J023006P21, full insert sequence),Os06g0275800 protein (Putative Na+-dependent neutral amino acid transporter) (cDNA clone:J013051P03, full insert sequence) (cDNA clone:J013121D24, full insert sequence) Q6Z336,Q9FNZ8 Q6Z336_ORYSJ,Q9FNZ8_ORYSJ Os02g0727100 Os02g0727100 B1121A12.26 OSNPB_020727100,Os06g0275800 Os06g0275800 OSNPB_060275800 P0038C05.39 ENOG411E1KP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene receptor Ethylene receptor 4 (OsETR4) (EC 2.7.13.3) (OsPK3) Q7F239 ETR4_ORYSJ ETR4 Os07g0259100 LOC_Os07g15540 OJ1354_H07.118 OJ1370_E02.107 OsJ_23757 DISRUPTION PHENOTYPE: Late heading, altered kernel color and viviparous phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling. {ECO:0000250|UniProtKB:P49333}. ENOG411E1KZ Q9C8Y4 Q9C8Y4_ARATH Senescence-associated family protein (Uncharacterized protein T27F4.8) FUNCTION: Involved in modulation of redox homeostasis to regulate leaf senescence mediated by age and stress factors during plant development. Its function is dependent of EIN2, a central factor of ethylene signaling. {ECO:0000269|PubMed:21940719}. MISCELLANEOUS: Plants overexpressing AAF exhibit increased root growth, elevated level of cellular reactive oxygen species (ROS), enhanced sensitivity to oxidative stress, and early leaf senescence induced by continuous darkness and by age-dependent signaling. {ECO:0000269|PubMed:21940719}. 45861 Senescence-associated family protein (Uncharacterized protein T27F4.8) chloroplast [GO:0009507]; cellular response to oxidative stress [GO:0034599]; leaf senescence [GO:0010150]; reactive oxygen species metabolic process [GO:0072593]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2201547; AT1G66330 NA Senescence-associated protein OSA15, chloroplastic,Os05g0148700 protein (Fragment) Q65XF2,A0A0P0WI86 OSA15_ORYSJ,A0A0P0WI86_ORYSJ OSA15 PSAG Os05g0148700 LOC_Os05g05600 OJ1504_G04.1 OsJ_17123,Os05g0148700 OSNPB_050148700 FUNCTION: May be involved in the regulation of leaf senescence. {ECO:0000250|UniProtKB:Q9AXU3}. ENOG411E1KY PCMP-H53 Q9SMZ2 PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 110815 Pentatricopeptide repeat-containing protein At4g33170 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2125899; AT4G33170 repeat-containing protein NA NA NA NA NA NA NA ENOG411E1KX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os02g0517300 protein,Os01g0769000 protein (cDNA clone:J023089F03, full insert sequence),Os01g0769000 protein (Fragment) Q64M88,Q5ZAQ3,A0A0P0V8R2 Q64M88_ORYSJ,Q5ZAQ3_ORYSJ,A0A0P0V8R2_ORYSJ Os02g0517300 Os02g0517300 OSJNBa0004O05.14 OSJNBb0071O21.39 OSNPB_020517300,Os01g0769000 B1143G03.27 OSNPB_010769000 P0665A11.3,Os01g0769000 OSNPB_010769000 ENOG411E1KC PCMP-H23 Q9SS60 PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 99022 Pentatricopeptide repeat-containing protein At3g03580 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2096414; AT3G03580 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E1KD PKP4 Q9M3B6,A0A1I9LMN8,A0A1I9LMN7 PKP4_ARATH,A0A1I9LMN8_ARATH,A0A1I9LMN7_ARATH Plastidial pyruvate kinase 4, chloroplastic (PKp4) (EC 2.7.1.40),Pyruvate kinase family protein PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5. ARA:AT3G49160-MONOMER; 2.7.1.40 77827,56800,67966 Plastidial pyruvate kinase 4, chloroplastic (PKp4) (EC 2.7.1.40),Pyruvate kinase family protein chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096],kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743] locus:2082866; AT3G49160 Pyruvate kinase NA NA NA NA NA NA NA ENOG411E1KK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leaf senescence protein-like Leaf senescence protein-like (Os06g0272700 protein),Os11g0586800 protein,Os11g0586825 protein,Os06g0272800 protein Q5VQ40,A0A0N7KT51,A0A0P0Y3R3,A0A0P0WV46 Q5VQ40_ORYSJ,A0A0N7KT51_ORYSJ,A0A0P0Y3R3_ORYSJ,A0A0P0WV46_ORYSJ Os06g0272700 Os06g0272700 OSNPB_060272700 P0662B01.31,Os11g0586800 OSNPB_110586800,Os11g0586825 OSNPB_110586825,Os06g0272800 OSNPB_060272800 ENOG411E1KI BAG5 O65373 BAG5_ARATH BAG family molecular chaperone regulator 5, mitochondrial (Bcl-2-associated athanogene 5) FUNCTION: Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses. {ECO:0000250}. 24787 BAG family molecular chaperone regulator 5, mitochondrial (Bcl-2-associated athanogene 5) mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; calmodulin binding [GO:0005516]; chaperone binding [GO:0051087]; protein folding [GO:0006457]; response to external biotic stimulus [GO:0043207]; response to temperature stimulus [GO:0009266] locus:2008840; AT1G12060 BAG domain Os02g0719700 protein (cDNA clone:002-184-A06, full insert sequence) Q6ZI01 Q6ZI01_ORYSJ Os02g0719700 Os02g0719700 OJ1008_D06.11 OSNPB_020719700 ENOG411E1K1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 14 Beta-amylase (EC 3.2.1.2) Q10LG9 Q10LG9_ORYSJ LOC_Os03g22790 Os03g0351300 OsJ_10841 OSNPB_030351300 ENOG411E1K0 T07M07.11 Q9XEF2 Q9XEF2_ARATH HXXXD-type acyl-transferase family protein (Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase) (Uncharacterized protein T07M07.11) ARA:AT2G40230-MONOMER; 47659 HXXXD-type acyl-transferase family protein (Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase) (Uncharacterized protein T07M07.11) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2065064; AT2G40230 Transferase family NA NA NA NA NA NA NA ENOG411E8ED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0554500 protein (Fragment) A0A0P0VKD0 A0A0P0VKD0_ORYSJ Os02g0554500 OSNPB_020554500 ENOG411E8EM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8EN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE206 protein (Os02g0826300 protein) (cDNA, clone: J065214G11, full insert sequence) Q6K7R7 Q6K7R7_ORYSJ OsCLE206 Os02g0826300 OsJ_08957 OSNPB_020826300 P0452F04.16 ENOG411E8EH Q3EB12 Q3EB12_ARATH Uncharacterized protein 21772 Uncharacterized protein locus:504955747; AT3G24535 NA NA NA NA NA NA NA NA ENOG411E8EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411E8EK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8EU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EGX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os11g0225832 protein,Os01g0885550 protein,Os04g0117000 protein,Os02g0818601 protein A0A0P0Y0P9,A0A0P0VBB2,A0A0P0W680,A0A0P0VRB0 A0A0P0Y0P9_ORYSJ,A0A0P0VBB2_ORYSJ,A0A0P0W680_ORYSJ,A0A0P0VRB0_ORYSJ Os11g0225832 OSNPB_110225832,Os01g0885550 OSNPB_010885550,Os04g0117000 OSNPB_040117000,Os02g0818601 OSNPB_020818601 ENOG411EGX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein Sb1211s002020 source NA NA NA NA NA NA NA ENOG411EGX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EGX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosome associated membrane protein RAMP4 Os07g0583000 protein Q84ZT3 Q84ZT3_ORYSJ OJ1127_E01.101 Os07g0583000 OJ1301_C12.31 OSNPB_070583000 ENOG411EGX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EAL NA NA NA NA NA NA NA ENOG411EGX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EGX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive NA NA NA NA NA NA NA ENOG411EGXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EGXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411EGXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGXE ETERNALLY VEGETATIVE PHASE 1,7SL RNA1 Q9M0W8,Q9M0W9,Q9ZT93,Q9ZQZ6,Q9M0W4,Q9ZT95,Q9ZQZ4,F4JI85 Q9M0W8_ARATH,Q9M0W9_ARATH,Q9ZT93_ARATH,Q9ZQZ6_ARATH,Q9M0W4_ARATH,Q9ZT95_ARATH,Q9ZQZ4_ARATH,F4JI85_ARATH Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05270),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05260),Putative ubiquitin-like protein (Ubiquitin family protein) (Uncharacterized protein AT4g02950),Putative ubiquitin-like protein (Ubiquitin family protein) (Uncharacterized protein AT4g03350),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05310),7SL RNA1 (Putative ubiquitin-like protein) (Uncharacterized protein AT4g02970),Putative ubiquitin-like protein (Ubiquitin family protein) (Uncharacterized protein AT4g03370),Ubiquitin family protein FUNCTION: Controls phase transition from the vegetative to the reproductive state. Involved in the maintenance of the shoot apical meristem (SAM) thus preventing inflorescence meristem (IM) formation and subsequent inflorescence stem development during flowering. Regulates leaf and organ morphology. {ECO:0000269|PubMed:21624980}. MISCELLANEOUS: Transcribed by RNA polymerase III (pol III). {ECO:0000269|PubMed:15960619}. 14914,29882,35894,29791,47424,30384,33645,36370 Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05270),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05260),Putative ubiquitin-like protein (Ubiquitin family protein) (Uncharacterized protein AT4g02950),Putative ubiquitin-like protein (Ubiquitin family protein) (Uncharacterized protein AT4g03350),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05310),7SL RNA1 (Putative ubiquitin-like protein) (Uncharacterized protein AT4g02970),Putative ubiquitin-like protein (Ubiquitin family protein) (Uncharacterized protein AT4g03370),Ubiquitin family protein nucleus [GO:0005634]; leaf development [GO:0048366]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2115693;,locus:2115688;,locus:2139355;,locus:2125517;,locus:2115648;,locus:2139375;,locus:2125546;,locus:2125532; AT4G05270,AT4G05260,AT4G02950,AT4G03350,AT4G05310,AT4G02970,AT4G03370,AT4G03360 ubiquitin family NA NA NA NA NA NA NA ENOG411EGXF Q9FYK4 Q9FYK4_ARATH At1g24600 (F21J9.26) 8269 At1g24600 (F21J9.26) locus:505006144; AT1G24600 NA NA NA NA NA NA NA NA ENOG411EGXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EGXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine proteinase inhibitor Q6ERN4 Q6ERN4_ORYSJ Os02g0278600 OSJNBa0055M07.31 OSNPB_020278600 P0444A09.10 ENOG411EGXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tify domain NA NA NA NA NA NA NA ENOG411EGXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC Os05g0588000 protein A0A0N7KLC0 A0A0N7KLC0_ORYSJ Os05g0588000 OSNPB_050588000 ENOG411EGXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0535100 protein,Os01g0633300 protein (Transcription factor X2-like) Q8GSZ2,Q5VNT3 Q8GSZ2_ORYSJ,Q5VNT3_ORYSJ OSJNBa0086A10.12 Os01g0535100 OSNPB_010535100,Os01g0633300 OsJ_02726 OSNPB_010633300 P0663E10.11 ENOG411EGXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0405400 protein (Fragment) A0A0P0WM93 A0A0P0WM93_ORYSJ Os05g0405400 OSNPB_050405400 ENOG411EGXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411EGXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histidine kinase NA NA NA NA NA NA NA ENOG411EGXX F21F14.100 Q9M272 Q9M272_ARATH Uncharacterized protein At3g61930 (Uncharacterized protein At3g61930/F21F14_100) (Uncharacterized protein F21F14.100) 12187 Uncharacterized protein At3g61930 (Uncharacterized protein At3g61930/F21F14_100) (Uncharacterized protein F21F14.100) locus:2079487; AT3G61930 NA NA NA NA NA NA NA NA ENOG411EGXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0969600 protein B9EWY7 B9EWY7_ORYSJ Os01g0969600 OsJ_04914 OSNPB_010969600 ENOG411EGXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0284500 protein A0A0P0Y9F2 A0A0P0Y9F2_ORYSJ Os12g0284500 OSNPB_120284500 ENOG411ECFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M28 NA NA NA NA NA NA NA ENOG411ECFA CYP81D11,CYP81D6,CYP81D7,C7A10.30,C7A10.40 Q9LHA1,O22185,O22188,O23155,O23156 C8D11_ARATH,O22185_ARATH,O22188_ARATH,O23155_ARATH,O23156_ARATH Cytochrome P450 81D11 (EC 1.14.-.-),Cytochrome P450, family 81, subfamily D, polypeptide 6 (Putative cytochrome P450),Cytochrome P450, family 81, subfamily D, polypeptide 7 (Putative cytochrome P450),At4g37330 (Cytochrome P450, family 81, subfamily D, polypeptide 4) (Cytochrome P450-like protein),Cytochrome P450, family 81, subfamily D, polypeptide 5 (Cytochrome P450-like protein) (Putative cytochrome p450 family protein) FUNCTION: May play a role in cis-jasmone-activated defense response to aphids. {ECO:0000269|PubMed:18356298, ECO:0000269|PubMed:21422824}. ARA:AT3G28740-MONOMER;,ARA:AT2G23220-MONOMER;,ARA:AT2G23190-MONOMER;,ARA:AT4G37330-MONOMER;,ARA:AT4G37320-MONOMER; 1.14.-.- 57692,59090,62777,55623,55883 Cytochrome P450 81D11 (EC 1.14.-.-),Cytochrome P450, family 81, subfamily D, polypeptide 6 (Putative cytochrome P450),Cytochrome P450, family 81, subfamily D, polypeptide 7 (Putative cytochrome P450),At4g37330 (Cytochrome P450, family 81, subfamily D, polypeptide 4) (Cytochrome P450-like protein),Cytochrome P450, family 81, subfamily D, polypeptide 5 (Cytochrome P450-like protein) (Putative cytochrome p450 family protein) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to insect [GO:0002213]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550],membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550] TISSUE SPECIFICITY: Expressed in leaf hydathodes. {ECO:0000269|PubMed:21422824}. locus:2098418;,locus:2058619;,locus:2058657;,locus:2115075;,locus:2115135; AT3G28740,AT2G23220,AT2G23190,AT4G37330,AT4G37320 Cytochrome P450 NA NA NA NA NA NA NA ENOG411ECFG CYP96A11,''cytochrome P450,MJM18.5 Q9SVA8,O49373,Q9LT90,A0A1P8B4Y3 Q9SVA8_ARATH,O49373_ARATH,Q9LT90_ARATH,A0A1P8B4Y3_ARATH Cytochrome P450, family 96, subfamily A, polypeptide 11 (Cytochrome P450-like protein),Cytochrome P450, family 96, subfamily A, polypeptide 2 (Cytochrome P450-like protein) (Cytochrome p450 - like protein),Cytochrome P450 family protein (Similarity to cytochrome P450),Cytochrome P450, family 96, subfamily A, polypeptide 11 ARA:GQT-583-MONOMER;,ARA:GQT-1738-MONOMER;,ARA:GQT-1721-MONOMER; 53550,57608,28337,59275 Cytochrome P450, family 96, subfamily A, polypeptide 11 (Cytochrome P450-like protein),Cytochrome P450, family 96, subfamily A, polypeptide 2 (Cytochrome P450-like protein) (Cytochrome p450 - like protein),Cytochrome P450 family protein (Similarity to cytochrome P450),Cytochrome P450, family 96, subfamily A, polypeptide 11 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2122506;,locus:2116550;,locus:2166513; AT4G39500,AT4G32170,AT5G51900 Cytochrome P450 NA NA NA NA NA NA NA ENOG411ECFX FACT Q9FFQ7 FACT_ARATH Fatty alcohol:caffeoyl-CoA acyltransferase (EC 2.3.1.-) (Fatty alcohol:caffeoyl-CoA caffeoyl transferase) FUNCTION: Involved in the synthesis of alkyl hydroxycinnamates in root waxes. Functions as a fatty alcohol:hydroxy cinnamoyl-CoA acyltransferase with apparent preference for caffeoyl-CoA. {ECO:0000269|PubMed:22797656}. ARA:AT5G63560-MONOMER; 2.3.1.- 47113 Fatty alcohol:caffeoyl-CoA acyltransferase (EC 2.3.1.-) (Fatty alcohol:caffeoyl-CoA caffeoyl transferase) caffeoyl-CoA: alcohol caffeoyl transferase activity [GO:0090430]; alkyl caffeate ester biosynthetic process [GO:0090431]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed in the outermost circumference of mature roots, the endodermis of young roots and in the seed coat of developing seeds. Expressed in outer integument layer 1 of the seed coat. {ECO:0000269|PubMed:22797656}. locus:2160549; AT5G63560 Transferase family NA NA NA NA NA NA NA ENOG411ECFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0504000 protein,Os02g0503800 protein A0A0P0VJC6,A0A0N7KFC2 A0A0P0VJC6_ORYSJ,A0A0N7KFC2_ORYSJ Os02g0504000 OSNPB_020504000,Os02g0503800 OSNPB_020503800 ENOG411ECFQ BG5,BG4,T16O9.3 O49353,O49352,Q8VZ16,Q4PSF2,Q9LP27 BG5_ARATH,BG4_ARATH,Q8VZ16_ARATH,Q4PSF2_ARATH,Q9LP27_ARATH Probable glucan endo-1,3-beta-glucosidase BG5 (EC 3.2.1.39) (Beta-1,3-glucanase 5),Probable glucan endo-1,3-beta-glucosidase BG4 (EC 3.2.1.39) (Beta-1,3-glucanase 4),Glycosyl hydrolase superfamily protein (Putative beta-1,3-glucanase),Beta-1,3-glucanase, putative (Glycosyl hydrolase superfamily protein) (Putative beta-1,3-glucanase 4) FUNCTION: May play a role in plant defense against pathogens. {ECO:0000250|UniProtKB:F4J270}. ARA:AT5G20340-MONOMER;,ARA:AT5G20330-MONOMER;,ARA:AT5G20390-MONOMER;,ARA:AT5G20560-MONOMER;,ARA:AT1G33220-MONOMER; 3.2.1.39 38877,37684,37965,37179,36606 Probable glucan endo-1,3-beta-glucosidase BG5 (EC 3.2.1.39) (Beta-1,3-glucanase 5),Probable glucan endo-1,3-beta-glucosidase BG4 (EC 3.2.1.39) (Beta-1,3-glucanase 4),Glycosyl hydrolase superfamily protein (Putative beta-1,3-glucanase),Beta-1,3-glucanase, putative (Glycosyl hydrolase superfamily protein) (Putative beta-1,3-glucanase 4) anchored component of plasma membrane [GO:0046658]; extracellular region [GO:0005576]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; glucan exo-1,3-beta-glucosidase activity [GO:0004338]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952],anchored component of plasma membrane [GO:0046658]; glucan exo-1,3-beta-glucosidase activity [GO:0004338]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2149289;,locus:2149279;,locus:2149209;,locus:2149917;,locus:2196658; AT5G20340,AT5G20330,AT5G20390,AT5G20560,AT1G33220 Glycosyl hydrolases family 17 NA NA NA NA NA NA NA ENOG411ECFU ABCF2,ABCF5 Q9FIB4,Q9LV93 AB2F_ARATH,AB5F_ARATH ABC transporter F family member 2 (ABC transporter ABCF.2) (AtABCF2) (GCN20-type ATP-binding cassette protein GCN2),ABC transporter F family member 5 (ABC transporter ABCF.5) (AtABCF5) (GCN20-type ATP-binding cassette protein GCN5) 76491,78001 ABC transporter F family member 2 (ABC transporter ABCF.2) (AtABCF2) (GCN20-type ATP-binding cassette protein GCN2),ABC transporter F family member 5 (ABC transporter ABCF.5) (AtABCF5) (GCN20-type ATP-binding cassette protein GCN5) ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215],ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215]; response to nematode [GO:0009624] locus:2178168;,locus:2177689; AT5G09930,AT5G64840 ABC transporter Os11g0603200 protein (Fragment) A0A0P0Y4L5 A0A0P0Y4L5_ORYSJ Os11g0603200 OSNPB_110603200 ENOG411ECF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0431900 protein (Protein kinase APK1B, chloroplast, putative, expressed) Q337X4 Q337X4_ORYSJ Os10g0431900 LOC_Os10g29620 Os10g0431900 OSNPB_100431900 ENOG411ECF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways (By similarity) Sucrose synthase 1 (OsSUS1) (EC 2.4.1.13) (Sucrose synthase 2) (RSs2) (Sucrose-UDP glucosyltransferase 1),Sucrose synthase 3 (OsSUS3) (RSs3) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 3),Os03g0401300 protein (Fragment) P31924,Q43009,A0A0P0VYH2,A0A0P0VYG9 SUS1_ORYSJ,SUS3_ORYSJ,A0A0P0VYH2_ORYSJ,A0A0P0VYG9_ORYSJ SUS1 RSS2 RSUS1 Os03g0401300 LOC_Os03g28330 OsJ_11182,SUS3 RSS3 RSUS3 Os07g0616800 LOC_Os07g42490 B1056G08.118 OsJ_25133 P0552F09.101,Os03g0401300 OSNPB_030401300 FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000250}. ENOG411E838 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 'Cold-shock' DNA-binding domain NA NA NA NA NA NA NA ENOG411DSPS TSA1,TRPA1 Q42529,O22765 TRPA2_ARATH,TRPA1_ARATH Tryptophan synthase alpha chain, chloroplastic (EC 4.2.1.20) (Indole-3-glycerol-phosphate lyase, chloroplastic) (EC 4.1.2.8) (Protein TRYPTOPHAN-REQUIRING 3),Tryptophan synthase alpha chain (EC 4.2.1.20) (Indole synthase) (Indole-3-glycerol-phosphate lyase) (EC 4.1.2.8) DISRUPTION PHENOTYPE: Compressed root wave phenotype on tilted agar surfaces. Reduced accumulation of tryptophan, but increased levels of auxin. {ECO:0000269|PubMed:11069706, ECO:0000269|PubMed:9839461}. Seedling lethal without exogenous tryptophan; Resistant to anthranilate analogs (herbicide)-R. Last-1991 FUNCTION: The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Required for tryptophan biosynthesis. Contributes to the tryptophan-independent indole biosynthesis, and possibly to auxin production. {ECO:0000269|PubMed:11069706, ECO:0000269|PubMed:7476868, ECO:0000269|PubMed:9003322, ECO:0000269|PubMed:9839461}.,FUNCTION: The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate (By similarity). Contributes to the tryptophan-independent indole biosynthesis, and possibly to auxin production. {ECO:0000250, ECO:0000269|PubMed:18844775}. PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5. ARA:AT3G54640-MONOMER;,ARA:AT4G02610-MONOMER; 4.1.2.8; 4.2.1.20; 4.1.2.8 33200,29579 Tryptophan synthase alpha chain, chloroplastic (EC 4.2.1.20) (Indole-3-glycerol-phosphate lyase, chloroplastic) (EC 4.1.2.8) (Protein TRYPTOPHAN-REQUIRING 3),Tryptophan synthase alpha chain (EC 4.2.1.20) (Indole synthase) (Indole-3-glycerol-phosphate lyase) (EC 4.1.2.8) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; indole-3-glycerol-phosphate lyase activity [GO:0033984]; tryptophan synthase activity [GO:0004834]; auxin biosynthetic process [GO:0009851]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; gravitropism [GO:0009630]; response to cytokinin [GO:0009735]; tryptophan biosynthetic process [GO:0000162],cytoplasm [GO:0005737]; indole-3-glycerol-phosphate lyase activity [GO:0033984]; tryptophan synthase activity [GO:0004834]; auxin biosynthetic process [GO:0009851] DEVELOPMENTAL STAGE: Mostly present in vascular tissues. In flowers, expressed in carpels, stamens and pollen. {ECO:0000269|PubMed:18844775}. TISSUE SPECIFICITY: Mostly expressed in roots, hypocotyls and leaves, and, to a lower extent, in seedlings, cotyledons, stems, inflorescences, flowers, siliques and seeds. {ECO:0000269|PubMed:18844775}.,TISSUE SPECIFICITY: Ubiquitously expressed at low levels in seedlings, roots, hypocotyls, cotyledons, stems, leaves, inflorescences, flowers, siliques and seeds. {ECO:0000269|PubMed:18844775}. locus:3685290;,locus:2132328; AT3G54640,AT4G02610 Indole-3-glycerol phosphate lyase Os07g0182100 protein (Putative tryptophan synthase alpha chain) (cDNA clone:001-019-G11, full insert sequence) (cDNA clone:J013078I01, full insert sequence),Indole-3-glycerol phosphate lyase, chloroplast, putative, expressed (Os03g0797000 protein) (Putative indole-3-glycerol phosphate lyase) (cDNA clone:J033046F03, full insert sequence) Q6ZL61,Q7Y1H9 Q6ZL61_ORYSJ,Q7Y1H9_ORYSJ Os07g0182100 Os07g0182100 OJ1506_G02.1 OSNPB_070182100,OSJNBa0094F01.18 LOC_Os03g58260 Os03g0797000 OsJ_12954 OSNPB_030797000 ENOG411DSPR XPO1 Q9SMV6 XPO1A_ARATH Protein EXPORTIN 1A (AtCRM1) (AtXPO1) (Protein HEAT-INTOLERANT 2) DISRUPTION PHENOTYPE: Gametophyte defective when both XPO1A and XPO1B are disrupted. Abnormal pollen germination and tube growth, impaired female gametophyte development and embryo lethal (PubMed:18791220). Impaired ability to withstand moderate heat stress (37 degrees Celsius). Enhanced sensitivy to methyl viologen (MV)-induced oxidative stress (PubMed:20345641). {ECO:0000269|PubMed:18791220, ECO:0000269|PubMed:20345641}. embryo lethal.,Female gametophytes do not complete all mitotic divisions and embryo sac development is defective. FUNCTION: Receptor for the leucine-rich nuclear export signal (NES). Binds cooperatively to the NES on its target protein and to the small GTPase Ran in its active GTP-bound form (PubMed:10652141, PubMed:16766674). Required for the maternal-to-embryonic transition and during gametophyte development (PubMed:18791220). Involved in heat-induced oxidative stress basal resistance (PubMed:20345641). {ECO:0000269|PubMed:10652141, ECO:0000269|PubMed:16766674, ECO:0000269|PubMed:18791220, ECO:0000269|PubMed:20345641}. R-ATH-69273; 123243 Protein EXPORTIN 1A (AtCRM1) (AtXPO1) (Protein HEAT-INTOLERANT 2) cytosol [GO:0005829]; nuclear membrane [GO:0031965]; nuclear pore [GO:0005643]; nucleus [GO:0005634]; nuclear export signal receptor activity [GO:0005049]; Ran GTPase binding [GO:0008536]; receptor activity [GO:0004872]; embryo sac development [GO:0009553]; mRNA transport [GO:0051028]; pollen development [GO:0009555]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; protein export from nucleus [GO:0006611]; regulation of protein export from nucleus [GO:0046825]; response to heat [GO:0009408]; ribosomal large subunit export from nucleus [GO:0000055]; ribosomal small subunit export from nucleus [GO:0000056] TISSUE SPECIFICITY: Expressed ubiquitously, with higher levels in stems, inflorescences and roots (PubMed:10652141, PubMed:20345641). Present in mature pollen grains, unpollinated pistils, and 2-week-old seedlings (PubMed:18791220). {ECO:0000269|PubMed:10652141, ECO:0000269|PubMed:18791220, ECO:0000269|PubMed:20345641}. locus:2148216; AT5G17020 exportin-1 Os03g0858100 protein (Putative chromosome region maintenance protein),Os03g0858100 protein (Fragment) Q84M87,A0A0P0W691 Q84M87_ORYSJ,A0A0P0W691_ORYSJ Os03g0858100 OSJNBa0059G06.10 OSNPB_030858100,Os03g0858100 OSNPB_030858100 ENOG411DSPQ A1L4W6,A0A1P8AS77 A1L4W6_ARATH,A0A1P8AS77_ARATH At1g16290 (Transglycosylase),Transglycosylase 47941,49036 At1g16290 (Transglycosylase),Transglycosylase chloroplast [GO:0009507]; vacuole [GO:0005773] locus:2032925; AT1G16290 Transglycosylase SLT domain Os02g0170900 protein (Fragment) A0A0P0VF81 A0A0P0VF81_ORYSJ Os02g0170900 OSNPB_020170900 ENOG411DSPW Q9FI59 Q9FI59_ARATH Alpha/beta-Hydrolases superfamily protein (Gb|AAD29063.1) 45768 Alpha/beta-Hydrolases superfamily protein (Gb|AAD29063.1) hydrolase activity [GO:0016787] locus:2157343; AT5G50890 GDSL esterase lipase Lipase (Class 3)-like protein (Os01g0751600 protein) (cDNA clone:002-145-D03, full insert sequence) Q943F9 Q943F9_ORYSJ Os01g0751600 OsJ_03472 OSNPB_010751600 P0046E05.29 P0435B05.10 ENOG411DSPV Q9LPY3,Q8H0V8,A0A1P8B4Y6,F4JJM1 Q9LPY3_ARATH,Q8H0V8_ARATH,A0A1P8B4Y6_ARATH,F4JJM1_ARATH Pliceosome associated protein-like protein (T23J18.18),At4g21660 (Proline-rich spliceosome-associated (PSP) family protein) (Spliceosome associated protein-like),Proline-rich spliceosome-associated (PSP) family protein R-ATH-72163;R-ATH-72165; 22743,66833,78156,68519 Pliceosome associated protein-like protein (T23J18.18),At4g21660 (Proline-rich spliceosome-associated (PSP) family protein) (Spliceosome associated protein-like),Proline-rich spliceosome-associated (PSP) family protein catalytic step 2 spliceosome [GO:0071013]; chloroplast [GO:0009507]; precatalytic spliceosome [GO:0071011]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U2-type spliceosomal complex [GO:0005684]; mRNA splicing, via spliceosome [GO:0000398],nucleus [GO:0005634],integral component of membrane [GO:0016021]; nucleus [GO:0005634],catalytic step 2 spliceosome [GO:0071013]; cytosol [GO:0005829]; precatalytic spliceosome [GO:0071011]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U2-type spliceosomal complex [GO:0005684]; mRNA splicing, via spliceosome [GO:0000398] locus:2200126;,locus:2119038; AT1G11520,AT4G21660 Splicing factor 3B subunit Os02g0827300 protein (Putative splicing factor 3B subunit 2) Q6K7Q7 Q6K7Q7_ORYSJ Os02g0827300 Os02g0827300 OsJ_08964 OSNPB_020827300 P0452F04.27 ENOG411DSPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os08g0158400 protein (Putative berberine bridge enzyme) Q84PV5 Q84PV5_ORYSJ P0498E12.109 Os08g0158400 OSNPB_080158400 ENOG411DSPT PUX13,PUX8,SAY1 Q9C5G7,F4JPR7,A0A1P8B4Q3 PUX13_ARATH,PUX8_ARATH,A0A1P8B4Q3_ARATH Plant UBX domain-containing protein 13 (PUX13),Plant UBX domain-containing protein 8 (PUX8) (Ara4-interacting protein) (Suppressor of ARA4-induced defect of ypt1) (SAY1),Ubiquitin-like superfamily protein 58130,62350,53808 Plant UBX domain-containing protein 13 (PUX13),Plant UBX domain-containing protein 8 (PUX8) (Ara4-interacting protein) (Suppressor of ARA4-induced defect of ypt1) (SAY1),Ubiquitin-like superfamily protein cytosol [GO:0005829],cytosol [GO:0005829]; nucleus [GO:0005634]; vesicle-mediated transport [GO:0016192] locus:2127198;,locus:2139787; AT4G23040,AT4G11740 UBX NA NA NA NA NA NA NA ENOG411DSPZ GAPC1,GAPC2 P25858,Q9FX54,F4HQT1 G3PC1_ARATH,G3PC2_ARATH,F4HQT1_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic (EC 1.2.1.12) (NAD-dependent glyceraldehydephosphate dehydrogenase C subunit 1),Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic (EC 1.2.1.12) (NAD-dependent glyceraldehydephosphate dehydrogenase C subunit 2),Glyceraldehyde-3-phosphate dehydrogenase C2 DISRUPTION PHENOTYPE: Delayed growth, small siliques with defects in fertility, and alterations of seed and fruit development. Reduced respiratory rates, pyruvate levels and Krebs cycle intermediates. Increased reactive oxygen species levels. {ECO:0000269|PubMed:18820081}. FUNCTION: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism. Required for full fertility (PubMed:18820081). Involved in response to oxidative stress by mediating plant responses to abscisic acid (ABA) and water deficits through the activation of PLDDELTA and production of phosphatidic acid (PA), a multifunctional stress signaling lipid in plants (PubMed:22589465). Associates with FBA6 to the outer mitochondrial membrane, in a redox-dependent manner, leading to binding and bundling of actin. Actin binding and bundling occurs under oxidizing conditions and is reversible under reducing conditions. May be part of a redox-dependent retrograde signal transduction network for adaptation upon oxidative stress (PubMed:23316205). Binds DNA in vitro. {ECO:0000269|PubMed:18820081, ECO:0000269|PubMed:22589465, ECO:0000269|PubMed:23316205}.,FUNCTION: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro. {ECO:0000250, ECO:0000269|PubMed:22589465}. MISCELLANEOUS: Plants contain three types of GAPDH: NAD-dependent cytosolic forms which participate in glycolysis, NAD-dependent chloroplastic forms which participate in plastidic glycolysis and NADP-dependent chloroplastic forms which participate in the photosynthetic reductive pentose phosphate pathway (Calvin-Benson cycle). All the forms are encoded by distinct genes. PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 1/5. R-ATH-70171;R-ATH-70263; 1.2.1.12; 1.2.1.12 36914,36913,33906 Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic (EC 1.2.1.12) (NAD-dependent glyceraldehydephosphate dehydrogenase C subunit 1),Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic (EC 1.2.1.12) (NAD-dependent glyceraldehydephosphate dehydrogenase C subunit 2),Glyceraldehyde-3-phosphate dehydrogenase C2 apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrial envelope [GO:0005740]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; DNA binding [GO:0003677]; glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [GO:0004365]; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity [GO:0008886]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; fruit development [GO:0010154]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to redox state [GO:0051775]; response to salt stress [GO:0009651]; response to sucrose [GO:0009744]; seed development [GO:0048316],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; DNA binding [GO:0003677]; glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [GO:0004365]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; zinc ion binding [GO:0008270]; defense response to bacterium [GO:0042742]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979],oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [GO:0016620] TISSUE SPECIFICITY: Expressed in leaves, stems and siliques and at lower levels in roots and flowers. {ECO:0000269|PubMed:15533878}. locus:2103085;,locus:2010007; AT3G04120,AT1G13440 Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic (EC 1.2.1.12) (PP38),Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic (EC 1.2.1.12),Glyceraldehyde-3-phosphate dehydrogenase 3, cytosolic (EC 1.2.1.12),Os04g0486600 protein (Fragment),Os08g0126300 protein (Fragment) Q0J8A4,Q7FAH2,Q6K5G8,A0A0P0WBW9,A0A0P0XBB4 G3PC1_ORYSJ,G3PC2_ORYSJ,G3PC3_ORYSJ,A0A0P0WBW9_ORYSJ,A0A0P0XBB4_ORYSJ GAPC1 GAPC GAPDH GPC Os08g0126300 LOC_Os08g03290 OJ1163_G08.15 OsJ_024858,GAPC2 GAPDH Os04g0486600 LOC_Os04g40950 H0302E05.3 OJ000223_09.15,GAPC3 GAPDH Os02g0601300 LOC_Os02g38920 OJ1791_B03.34 OsJ_07411,Os04g0486600 OSNPB_040486600,Os08g0126300 OSNPB_080126300 FUNCTION: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). {ECO:0000250}. MISCELLANEOUS: Plants contain two types of GAPDH: cytosolic forms which participate in glycolysis and chloroplast forms which participate in photosynthesis. All the forms are encoded by distinct genes. ENOG411DSPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os07g0615900 protein (cDNA clone:J013064I12, full insert sequence),Os07g0615900 protein (cDNA clone:J033068D01, full insert sequence),Os03g0181600 protein (Transposon protein, putative, unclassified, expressed) (cDNA clone:J013120L22, full insert sequence),Os01g0852650 protein,Os04g0127900 protein (Fragment),Os03g0181600 protein (Fragment) Q0D4N7,B7EMP8,Q10QV7,A0A0P0VAD9,A0A0P0W6H5,A0A0P0VU10 Q0D4N7_ORYSJ,B7EMP8_ORYSJ,Q10QV7_ORYSJ,A0A0P0VAD9_ORYSJ,A0A0P0W6H5_ORYSJ,A0A0P0VU10_ORYSJ Os07g0615900 Os07g0615900 OSNPB_070615900,Os07g0615900 OSNPB_070615900,LOC_Os03g08370 Os03g0181600 OSNPB_030181600,Os01g0852650 OSNPB_010852650,Os04g0127900 OSNPB_040127900,Os03g0181600 OSNPB_030181600 ENOG411DSPX CSLD2,CSLD3,CSLD5 Q9LFL0,Q9M9M4,Q9SRW9 CSLD2_ARATH,CSLD3_ARATH,CSLD5_ARATH Cellulose synthase-like protein D2 (AtCslD2) (EC 2.4.1.-),Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK),Cellulose synthase-like protein D5 (AtCslD5) (EC 2.4.1.-) DISRUPTION PHENOTYPE: Significant reduction of root and stem growth, xylan reduction in stem and increased susceptibility to the cellulose synthase inhibitor isoxaben. {ECO:0000269|PubMed:17892446}. Short, abnormal root hairs-W. Willats-2008,Defective root hairs-L. Dolan-2001,Dwarf; Small rosette; Short roots-W. Willats-2007 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.,FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. Required for synthesis of a cell wall polysaccharide essential for root hair elongation, but not initiation. May be the functional ortholog of rice CSLD1. {ECO:0000269|PubMed:11402188}.,FUNCTION: Involved in stem and root growth. Possesses xylan and homogalacturonan synthase activity. {ECO:0000269|PubMed:17892446}. ARA:AT5G16910-MONOMER;,ARA:AT3G03050-MONOMER;,ARA:AT1G02730-MONOMER; 2.4.2.24; 2.4.1.- 128360,128589,132587 Cellulose synthase-like protein D2 (AtCslD2) (EC 2.4.1.-),Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK),Cellulose synthase-like protein D5 (AtCslD5) (EC 2.4.1.-) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of Golgi membrane [GO:0030173]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; cellulose synthase (UDP-forming) activity [GO:0016760]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall organization or biogenesis [GO:0071669]; response to cold [GO:0009409]; root hair elongation [GO:0048767],endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; cellulose synthase (UDP-forming) activity [GO:0016760]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall organization or biogenesis [GO:0071669]; response to cold [GO:0009409],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; glucosyltransferase activity [GO:0046527]; mannan synthase activity [GO:0051753]; cell plate assembly [GO:0000919]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall organization or biogenesis [GO:0071669]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; shoot system development [GO:0048367] DEVELOPMENTAL STAGE: Expressed at its highest level between 21 and 25 days, during the inflorescence stem elongation phase. {ECO:0000269|PubMed:17892446}. TISSUE SPECIFICITY: Preferentially expressed in root hair cells. Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:11156607, ECO:0000269|PubMed:11402188}.,TISSUE SPECIFICITY: Expressed in vascular tissues. {ECO:0000269|PubMed:17892446}. locus:2148171;,locus:2097700;,locus:2024745; AT5G16910,AT3G03050,AT1G02730 cellulose synthase-like Cellulose synthase-like protein D2 (EC 2.4.1.-) (OsCslD2),Cellulose synthase-like protein D4 (EC 2.4.1.-) (OsCslD4),Os06g0111800 protein (Fragment) Q9LHZ7,Q2QNS6,A0A0P0WS24 CSLD2_ORYSJ,CSLD4_ORYSJ,A0A0P0WS24_ORYSJ CSLD2 Os06g0111800 LOC_Os06g02180 OsJ_019064 P0029D06.17,CSLD4 Os12g0555600 LOC_Os12g36890 OsJ_035046,Os06g0111800 OSNPB_060111800 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ENOG411DSPC Q9ZUP2,Q3EAS6,F4JBG2,A0A1I9LTM2,A0A1I9LTM3 RECA3_ARATH,RECA4_ARATH,F4JBG2_ARATH,A0A1I9LTM2_ARATH,A0A1I9LTM3_ARATH DNA repair protein recA homolog 3, mitochondrial (Recombinase A homolog 3),Putative DNA repair protein recA homolog 4 (Recombinase A homolog 4),P-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Involved in recombination ability and DNA strand transfer activity. {ECO:0000250}. 46160,24286,20823,15370,18460 DNA repair protein recA homolog 3, mitochondrial (Recombinase A homolog 3),Putative DNA repair protein recA homolog 4 (Recombinase A homolog 4),P-loop containing nucleoside triphosphate hydrolases superfamily protein mitochondrion [GO:0005739]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; DNA recombinase assembly [GO:0000730]; mitotic recombination [GO:0006312]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; DNA recombinase assembly [GO:0000730]; mitotic recombination [GO:0006312]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148],ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281] locus:2050439;,locus:2103131; AT2G19490,AT3G32920 DNA repair protein recA homolog 3 Os01g0901200 protein (Putative recA protein) Q5N6Y9 Q5N6Y9_ORYSJ Os01g0901200 Os01g0901200 OsJ_04434 OSNPB_010901200 P0035F12.24 P0551C06.5 ENOG411DSPB ATXR2 Q5PP37 ATXR2_ARATH Histone-lysine N-methyltransferase ATXR2 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 36) (Trithorax-related protein 2) (TRX-related protein 2) FUNCTION: Histone methyltransferase. {ECO:0000250}. 2.1.1.43 52803 Histone-lysine N-methyltransferase ATXR2 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 36) (Trithorax-related protein 2) (TRX-related protein 2) nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872] locus:2093059; AT3G21820 Histone-lysine n-methyltransferase Os04g0629100 protein (Fragment) A0A0P0WFA2,A0A0P0WFF1 A0A0P0WFA2_ORYSJ,A0A0P0WFF1_ORYSJ Os04g0629100 OSNPB_040629100 ENOG411DSPA BXL3,BXL4,XYL4 Q9LXD6,Q9FLG1,A0A1P8BFA0,A0A1P8BF93,F4KE06 BXL3_ARATH,BXL4_ARATH,A0A1P8BFA0_ARATH,A0A1P8BF93_ARATH,F4KE06_ARATH Beta-D-xylosidase 3 (AtBXL3) (EC 3.2.1.-) (Alpha-L-arabinofuranosidase) (EC 3.2.1.55),Beta-D-xylosidase 4 (AtBXL4) (EC 3.2.1.37),Beta-D-xylosidase 4,Glycosyl hydrolase family protein DISRUPTION PHENOTYPE: Reduced seeds size and delayed germination. {ECO:0000269|PubMed:16798843}. FUNCTION: Involved in the hydrolysis of arabinan. Can hydrolyze (1,3)-alpha-, (1,2)-alpha-linked side group residues and non-reducing terminal L-arabinofuranose residues of debranched (1,5)-alpha-L-arabinan backbone. Acts also as a beta-D-xylosidase, releasing D-xylose from arabinoxylan and xylan. {ECO:0000269|PubMed:16798843}.,FUNCTION: Beta-D-xylosidase showing an optimal efficiency with the natural substrate xylobiose. {ECO:0000269|PubMed:15181203}. MISCELLANEOUS: Might be processed at the C-terminus. ARA:AT5G09730-MONOMER;,ARA:AT5G64570-MONOMER; 3.2.1.37; 3.2.1.-; 3.2.1.55,3.2.1.37 83222,84308,65116,67274,57203 Beta-D-xylosidase 3 (AtBXL3) (EC 3.2.1.-) (Alpha-L-arabinofuranosidase) (EC 3.2.1.55),Beta-D-xylosidase 4 (AtBXL4) (EC 3.2.1.37),Beta-D-xylosidase 4,Glycosyl hydrolase family protein proteinaceous extracellular matrix [GO:0005578]; alpha-L-arabinofuranosidase activity [GO:0046556]; arabinan catabolic process [GO:0031222],apoplast [GO:0048046]; cell wall [GO:0005618]; xylan 1,4-beta-xylosidase activity [GO:0009044]; systemic acquired resistance [GO:0009627]; xylan catabolic process [GO:0045493],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in flowers and siliques, in the early stage of seed formation and not at seed maturation. Detected exclusively in the endosperm of very young seeds when the embryo is at the globular stage. {ECO:0000269|PubMed:16798843}.,TISSUE SPECIFICITY: Expressed in flowers, siliques and the apical part of the stems. {ECO:0000269|PubMed:12609041, ECO:0000269|PubMed:15181203}. locus:2144756;,locus:2174809;,locus:2144836; AT5G09730,AT5G64570,AT5G09700 Glycosyl hydrolase family 3 N terminal domain OSJNBb0079B02.3 protein (Os04g0640700 protein),Os04g0640700 protein Q7X6F6,A0A0P0WFE5 Q7X6F6_ORYSJ,A0A0P0WFE5_ORYSJ Os04g0640700 Os04g0640700 OSJNBb0079B02.3 OSNPB_040640700,Os04g0640700 OSNPB_040640700 ENOG411DSPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DSPF Q8VYG5 Q8VYG5_ARATH Protein kinase superfamily protein (Uncharacterized protein At3g57120) 50510 Protein kinase superfamily protein (Uncharacterized protein At3g57120) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2080580; AT3G57120 Protein tyrosine kinase Os09g0572100 protein (cDNA clone:002-103-A06, full insert sequence),Os02g0819900 protein (Protein kinase-like) Q651A2,Q6K718 Q651A2_ORYSJ,Q6K718_ORYSJ Os09g0572100 B1331F11.18 OSNPB_090572100,Os02g0819900 OJ1202_E07.25 OsJ_08898 OSNPB_020819900 P0474F11.6 ENOG411DSPE CYP87A2 Q6NPN1,Q9LN73,A0A1P8APH3,F4IDV9 Q6NPN1_ARATH,Q9LN73_ARATH,A0A1P8APH3_ARATH,F4IDV9_ARATH At1g12740 (Cytochrome P450, family 87, subfamily A, polypeptide 2) (Uncharacterized protein At1g12740),Cytochrome P450, family 87, subfamily A, polypeptide 2 (T12C24.27),Cytochrome P450, family 87, subfamily A, polypeptide 2 ARA:AT1G12740-MONOMER; R-ATH-211916;R-ATH-5365859; 54352,55058,42300 At1g12740 (Cytochrome P450, family 87, subfamily A, polypeptide 2) (Uncharacterized protein At1g12740),Cytochrome P450, family 87, subfamily A, polypeptide 2 (T12C24.27),Cytochrome P450, family 87, subfamily A, polypeptide 2 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] locus:2195098; AT1G12740 cytochrome P450 Cytochrome P450 87A3 (EC 1.14.-.-),Os02g0675400 protein Q7XU38,A3AWB6 C87A3_ORYSJ,A3AWB6_ORYSJ CYP87A3 Os04g0570000 LOC_Os04g48170 OSJNBa0088I22.16,Os02g0675400 OsJ_15749 OSNPB_020675400 MISCELLANEOUS: Not induced by auxin in the Yin-Yang mutant, characterized by an elevated growth response of the coleoptile to auxin. ENOG411DSPD T2E22.2 Q8L6Z9,Q9LTW8,A0A1P8B6G6,A0A1P8B6F9,A0A1P8B6F8,A0A1P8B6G0,F4I6G9 Q8L6Z9_ARATH,Q9LTW8_ARATH,A0A1P8B6G6_ARATH,A0A1P8B6F9_ARATH,A0A1P8B6F8_ARATH,A0A1P8B6G0_ARATH,F4I6G9_ARATH CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) Embryo defective; Globular-D. Meinke-2003 FUNCTION: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. {ECO:0000256|RuleBase:RU810713}. PATHWAY: Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2. {ECO:0000256|RuleBase:RU810713}. ARA:AT4G02120-MONOMER;,ARA:AT3G12670-MONOMER; R-ATH-499943; 6.3.4.2 60957,64304,56557,63545,52815,50538,65729 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) ATP binding [GO:0005524]; CTP synthase activity [GO:0003883]; 'de novo' CTP biosynthetic process [GO:0044210]; glutamine metabolic process [GO:0006541],cytosol [GO:0005829]; ATP binding [GO:0005524]; CTP synthase activity [GO:0003883]; 'de novo' CTP biosynthetic process [GO:0044210]; glutamine metabolic process [GO:0006541]; response to cadmium ion [GO:0046686] locus:2132208;,locus:2087765;,locus:2196984; AT4G02120,AT3G12670,AT1G30820 CTP synthase CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase),CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (Fragment),Os01g0654100 protein (Fragment) Q5VPD3,Q0IMP1,Q2QNR7,Q65XK2,A0A0P0WQH1,A0A0P0V5B4,A0A0P0V612,A0A0P0WQQ3,A0A0P0V605 Q5VPD3_ORYSJ,Q0IMP1_ORYSJ,Q2QNR7_ORYSJ,Q65XK2_ORYSJ,A0A0P0WQH1_ORYSJ,A0A0P0V5B4_ORYSJ,A0A0P0V612_ORYSJ,A0A0P0WQQ3_ORYSJ,A0A0P0V605_ORYSJ Os01g0654100 Os01g0654100 OsJ_02857 OSJNBb0006H05.28-1 OSNPB_010654100,Os12g0556600 Os12g0556600 OSNPB_120556600,Os12g0556600 LOC_Os12g36950 OsJ_36479 OSNPB_120556600,Os05g0573300 Os05g0573300 OJ1735_C10.16 OsJ_19625 OSNPB_050573300,Os05g0570400 OSNPB_050570400,Os01g0616900 OSNPB_010616900,Os01g0654100 OSNPB_010654100,Os05g0569700 OSNPB_050569700 FUNCTION: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. {ECO:0000256|RuleBase:RU810713}. ENOG411DSPK Q9SKK3,A0A1P8B2L4 Q9SKK3_ARATH,A0A1P8B2L4_ARATH EEIG1/EHBP1 protein amino-terminal domain protein (Expressed protein),EEIG1/EHBP1 protein amino-terminal domain protein 46874,60754 EEIG1/EHBP1 protein amino-terminal domain protein (Expressed protein),EEIG1/EHBP1 protein amino-terminal domain protein locus:2040060; AT2G25460 NA NA NA NA NA NA NA NA ENOG411DSPJ PUB15 Q681N2 PUB15_ARATH U-box domain-containing protein 15 (EC 2.3.2.27) (Plant U-box protein 15) (RING-type E3 ubiquitin transferase PUB15) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 73896 U-box domain-containing protein 15 (EC 2.3.2.27) (Plant U-box protein 15) (RING-type E3 ubiquitin transferase PUB15) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842] locus:2162276; AT5G42340 U-box domain-containing protein 15 NA NA NA NA NA NA NA ENOG411DSPI Q8RXP7 Q8RXP7_ARATH CemA-like proton extrusion protein-like protein (Uncharacterized protein At4g31040) (Uncharacterized protein At4g31041) 51021 CemA-like proton extrusion protein-like protein (Uncharacterized protein At4g31040) (Uncharacterized protein At4g31041) integral component of membrane [GO:0016021] locus:2126739; AT4G31040 chloroplast envelope membrane Os08g0224300 protein B9FZN7 B9FZN7_ORYSJ Os08g0224300 OsJ_26461 OSNPB_080224300 ENOG411DSPN F4IYB7 F4IYB7_ARATH Late embryogenesis abundant protein (LEA) family protein 23582 Late embryogenesis abundant protein (LEA) family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2095984; AT3G62580 Inherit from KOG: Transmembrane protein 205 Expressed protein (Os12g0557400 protein) (cDNA clone:006-202-H10, full insert sequence) (cDNA clone:J033034F22, full insert sequence) Q2QNQ6 Q2QNQ6_ORYSJ Os12g0557400 LOC_Os12g37060 Os12g0557400 OSNPB_120557400 ENOG411DSPM KLCR3,KLCR2 F4HSX9,Q9LII8,A0A1P8ARZ2,A0A1I9LMZ1 KLCR3_ARATH,KLCR2_ARATH,A0A1P8ARZ2_ARATH,A0A1I9LMZ1_ARATH Protein KINESIN LIGHT CHAIN-RELATED 3,Protein KINESIN LIGHT CHAIN-RELATED 2 (Kinesin light chain-like protein 1) (AtKLC1),Tetratricopeptide repeat (TPR)-like superfamily protein 71184,72515,72508,64802 Protein KINESIN LIGHT CHAIN-RELATED 3,Protein KINESIN LIGHT CHAIN-RELATED 2 (Kinesin light chain-like protein 1) (AtKLC1),Tetratricopeptide repeat (TPR)-like superfamily protein plasma membrane [GO:0005886]; pollen tube growth [GO:0009860]; regulation of defense response [GO:0031347] locus:2015959;,locus:2086834; AT1G27500,AT3G27960 Kinesin light Os02g0708400 protein (Putative kinesin light chain) (Putative kinesin light chain gene) (cDNA clone:J013151N03, full insert sequence),Kinesin light chain-like protein (Os02g0109800 protein) (cDNA clone:J013170A02, full insert sequence) Q8S3S1,Q6Z901 Q8S3S1_ORYSJ,Q6Z901_ORYSJ 49D11.11 Os02g0708400 OsJ_08096 OSJNBb0060O16.28 OSNPB_020708400,Os02g0109800 OSNPB_020109800 P0017C12.38 P0501G04.4 ENOG411DSP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-galactosidase Beta-galactosidase 12 (Lactase 12) (EC 3.2.1.23),Os09g0539200 protein Q0IZZ8,A0A0P0XPR0 BGA12_ORYSJ,A0A0P0XPR0_ORYSJ Os09g0539200 LOC_Os09g36810 OsJ_028990,Os09g0539200 OSNPB_090539200 ENOG411DSP2 Q94BU1 Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic (EC 2.7.-.-) ARA:GQT-487-MONOMER; 2.7.-.- 77462 Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic (EC 2.7.-.-) chloroplast [GO:0009507]; plastoglobule [GO:0010287]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2013041; AT1G71810 ABC1 family OSJNBb0079B02.1 protein (Os04g0640500 protein) (cDNA clone:J023056A15, full insert sequence) Q7XQV1 Q7XQV1_ORYSJ Os04g0640500 Os04g0640500 OsJ_16352 OSJNBb0079B02.1 OSNPB_040640500 ENOG411DSP1 NDF5 Q9C503 NDF5_ARATH Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:19122188}. Complete loss of post-illumination chlorophyll fluorescence; No other phenotypes mentioned-F. Sato-2009 FUNCTION: Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron transport chain. May function in assembly or stabilization of the NDH complex. {ECO:0000269|PubMed:19122188}. 39316 Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; carbohydrate binding [GO:0030246]; catalytic activity [GO:0003824]; carbohydrate metabolic process [GO:0005975]; photosynthetic electron transport in photosystem I [GO:0009773]; positive regulation of gene expression [GO:0010628] locus:2035646; AT1G55370 NA Aldose 1-epimerase family protein, expressed (Os03g0748300 protein) (Putative antifreeze glycoprotein) (cDNA clone:J013156O10, full insert sequence) Q10CW2 Q10CW2_ORYSJ OSJNBa0069E14.14 LOC_Os03g53710 Os03g0748300 OSNPB_030748300 ENOG411DSP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DSP7 PER7 Q9SY33 PER7_ARATH Peroxidase 7 (Atperox P7) (EC 1.11.1.7) (ATP30) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G30870-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 38339 Peroxidase 7 (Atperox P7) (EC 1.11.1.7) (ATP30) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2015786; AT1G30870 peroxidase Peroxidase (EC 1.11.1.7) Q69RP3 Q69RP3_ORYSJ Os07g0499500 Os07g0499500 OSJNBb0055I24.109 OSNPB_070499500 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DSP6 THIM Q9LIQ4 THIM_ARATH Hydroxyethylthiazole kinase (EC 2.7.1.50) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:23816351}. FUNCTION: Thiazole kinase involved in thiamine salvage pathway. {ECO:0000269|PubMed:23816351}. PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; 4-methyl-5-(2-phosphoethyl)-thiazole from 5-(2-hydroxyethyl)-4-methylthiazole: step 1/1. ARA:AT3G24030-MONOMER; 2.7.1.50 28795 Hydroxyethylthiazole kinase (EC 2.7.1.50) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase) ATP binding [GO:0005524]; hydroxyethylthiazole kinase activity [GO:0004417]; metal ion binding [GO:0046872]; thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiamine salvage [GO:0036172] locus:2076171; AT3G24030 hydroxyethyl)thiazole Os01g0363600 protein A0A0P0V2V1 A0A0P0V2V1_ORYSJ Os01g0363600 OSNPB_010363600 ENOG411DSP4 A0A1I9LM72,F4IXX4,A0A1P8BB21,F4KH50 A0A1I9LM72_ARATH,F4IXX4_ARATH,A0A1P8BB21_ARATH,F4KH50_ARATH Transcription factor IIIC, subunit 5 51795,65651,58692,63639 Transcription factor IIIC, subunit 5 transcription factor TFIIIC complex [GO:0000127]; RNA polymerase III type 1 promoter transcriptional preinitiation complex assembly [GO:0000999]; transcription from RNA polymerase III type 2 promoter [GO:0001009] locus:2114628;,locus:2183997; AT3G49410,AT5G24450 RNA polymerase III transcription factor (TF)IIIC subunit Os01g0528000 protein (Transcription factor-like protein) (cDNA clone:002-175-D06, full insert sequence) Q5QLI4 Q5QLI4_ORYSJ Os01g0528000 Os01g0528000 B1074C08.39 B1129H01.8 OSNPB_010528000 ENOG411DSP9 AGO1 O04379 AGO1_ARATH Protein argonaute 1 DISRUPTION PHENOTYPE: Narrow rosette leaves. Single shoot bearing a terminal inflorescence. Abnormal inflorescence with infertile flowers and filamentous organs. {ECO:0000269|PubMed:16081530, ECO:0000269|PubMed:9427751}. Heterozygous parents and progeny are indistinguishable from wild type.,Homozygous progeny has unexpanded pointed cotyledons and very narrow rosette leaves.,TAS1 TAS2 and TAS3 ta-siRNAs were below detectable levels.,The homozygous progeny is self-sterile.,The homozygous progeny has unexpanded cotyledons narrow leaves and a unique stem with abnormal inflorescences bearing infertile flowers.,Homozygous mutants initiated flowering 7 to 12 days after the wild type and were fertile: they produced 45 to 60% of the amount of seed of the wild type.,Mutants develop rosettes with dark green and serrated leaves. Rosette size is intermediate between that of stronger alleles and wild-type plants.,Homozygous mutant develop a small rosette with dark green and serrated leaves initiates flowering 10 to 15 days after the wild type and is almost totally sterile although occasionally it produces short siliques containing two to five seed.,Homozygous plants are completely deficient for post-transcriptional gene silencing. Altered leaf morphology; Decreased branching-C. Benning-1998 FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity. {ECO:0000269|PubMed:15882589, ECO:0000269|PubMed:16081530, ECO:0000269|PubMed:17158744, ECO:0000269|PubMed:18342361, ECO:0000269|PubMed:18342362, ECO:0000269|PubMed:18344228, ECO:0000269|PubMed:18799732, ECO:0000269|PubMed:19763164, ECO:0000269|PubMed:19861421, ECO:0000269|PubMed:20562854, ECO:0000269|PubMed:9427751}. R-ATH-426486;R-ATH-426496;R-ATH-5578749; 116191 Protein argonaute 1 cytoplasm [GO:0005737]; cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; endoribonuclease activity [GO:0004521]; metal ion binding [GO:0046872]; miRNA binding [GO:0035198]; mRNA binding [GO:0003729]; adaxial/abaxial pattern specification [GO:0009955]; adventitious root development [GO:0048830]; auxin metabolic process [GO:0009850]; defense response to virus [GO:0051607]; gene silencing by miRNA [GO:0035195]; innate immune response [GO:0045087]; leaf morphogenesis [GO:0009965]; leaf proximal/distal pattern formation [GO:0010589]; leaf vascular tissue pattern formation [GO:0010305]; posttranscriptional gene silencing [GO:0016441]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to far red light [GO:0010218]; stem cell development [GO:0048864]; transcription, DNA-templated [GO:0006351]; viral gene silencing in virus induced gene silencing [GO:0060145]; viral process [GO:0016032]; virus induced gene silencing [GO:0009616] DEVELOPMENTAL STAGE: Expressed throughout all developmental stages. TISSUE SPECIFICITY: Widely expressed at low levels. locus:2007760; AT1G48410 Argonaute Protein argonaute 1B (OsAGO1b),Protein argonaute 17 (OsAGO17),Protein argonaute 1A (OsAGO1a),Os04g0566500 protein,Os04g0566500 protein (Fragment),Os02g0672200 protein (Fragment) Q7XSA2,Q6H6C3,Q6EU14,A0A0P0WDZ5,A0A0P0WDM1,A0A0P0VN80 AGO1B_ORYSJ,AGO17_ORYSJ,AGO1A_ORYSJ,A0A0P0WDZ5_ORYSJ,A0A0P0WDM1_ORYSJ,A0A0P0VN80_ORYSJ AGO1B Os04g0566500 LOC_Os04g47870 OSJNBa0005N02.3,AGO17 Os02g0169400 LOC_Os02g07310 OJ1116_A06.3 OsJ_05545 P0669G09.26,AGO1A Os02g0672200 LOC_Os02g45070 OJ1493_H11.13,Os04g0566500 OSNPB_040566500,Os02g0672200 OSNPB_020672200 FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411DSP8 GA3OX1,GA3OX2 Q39103,Q9ZT84 G3OX1_ARATH,G3OX2_ARATH Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15) (GA 3-oxidase 1) (AtGA3ox1) (Gibberellin 3 beta-hydroxylase 1),Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15) (GA 3-oxidase 2) (AtGA3ox2) (Gibberellin 3 beta-hydroxylase 2) DISRUPTION PHENOTYPE: Semi-dwarf. Ga3ox1 and ga3ox2 double mutant has a severe defect in seed germination and root growth, and a dwarf phenotype. {ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:7756830}.,DISRUPTION PHENOTYPE: No visible phenotype; probably due to redundancy with GA3OX1. Ga3ox1 and ga3ox2 double mutant has a severe defect in seed germination and root growth, and a dwarf phenotype. {ECO:0000269|PubMed:16460513}. Decrease in levels of bioactive GA4.,Increased levels of GA9.,Roots shorter than that of wildtype.,Same number of leaves as wildtype but flowers three days later.,Seed germination similar to wildtype in both dark and light conditions.,Semi-dwarf phenotype.,30% smaller in leaf dimater and 37% shorter than single mutant ga3ox1-3.,Dwarf phenotype.,Same number of leaves as wildtype but flowers seven days later.,Seeds failed to germinate in the dark and only 5% germinate in light conditions.,Severe decrease in levels of bioactive GA4.,Severe defect in root length.,Dwarf phenotype early flowers are sterile while late flowers are fertile. Reduced silique length.,No visible phenotype.,Root length similar to that of wildtype. Semi-dwarf; Slightly smaller rosette; Slightly shorter roots; Late flowering-H. Goodman-1995 FUNCTION: Converts the inactive gibbberellin (GA) precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1. Involved in the production of bioactive GA for vegetative growth and development. {ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:9625708, ECO:0000269|PubMed:9836749}.,FUNCTION: Converts the inactive gibbberellin (GA) precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1. Involved in the production of bioactive GA for vegetative growth and development. {ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:9836749}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT1G15550-MONOMER;MetaCyc:AT1G15550-MONOMER;,ARA:AT1G80340-MONOMER;MetaCyc:AT1G80340-MONOMER; 1.14.11.15; 1.14.11.15 40162,38782 Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15) (GA 3-oxidase 1) (AtGA3ox1) (Gibberellin 3 beta-hydroxylase 1),Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15) (GA 3-oxidase 2) (AtGA3ox2) (Gibberellin 3 beta-hydroxylase 2) cytoplasm [GO:0005737]; gibberellin 3-beta-dioxygenase activity [GO:0016707]; metal ion binding [GO:0046872]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to gibberellin [GO:0009739]; response to red light [GO:0010114]; response to red or far red light [GO:0009639],gibberellin 3-beta-dioxygenase activity [GO:0016707]; metal ion binding [GO:0046872]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to red light [GO:0010114]; response to red or far red light [GO:0009639] DEVELOPMENTAL STAGE: Expressed in germinating seeds and in very young seedlings. Expressed in developing siliques 3-13 days after pollination. {ECO:0000269|PubMed:15927942, ECO:0000269|PubMed:9836749}.,DEVELOPMENTAL STAGE: Expressed in germinating seeds and in very young seedlings. Declines to low levels during later stages of development. {ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:9836749}. TISSUE SPECIFICITY: Expressed in stems, roots, leaves, flowers, and siliques. Highly expressed near the nodes in stems and in the stamen filaments of flowers. Detected in developing cotyledons, vegetative shoot apical meristem and non-meristematic, non-elongation regions of the roots. Found in the cortex and the endodermis of the embryo axis in germinating seeds and in the placenta in developing siliques. {ECO:0000269|PubMed:11737781, ECO:0000269|PubMed:15927942, ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:17277098, ECO:0000269|PubMed:7756830}.,TISSUE SPECIFICITY: Highly expressed in seedlings but also expressed in roots, leaves, stems, flowers, siliques and seeds. Detected predominantly in the hypocotyl and roots of young seedlings and in the petioles and vasculature of leaves. Not expressed in the shoot apical meristem, but found in the elongation zone, the quiescent center cells and the columella cells of the root tips. Found in the cortex and the endodermis of the embryo axis in germinating seeds. {ECO:0000269|PubMed:11737781, ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:17277098}. locus:2196623;,locus:2034205; AT1G15550,AT1G80340 gibberellin 3-beta-dioxygenase NA NA NA NA NA NA NA ENOG411EMPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PGAM Os02g0325401 protein (Fragment),Os11g0138400 protein,Os12g0135100 protein,Os11g0138600 protein,Os10g0344800 protein (Fragment) C7IYK9,A0A0P0XYJ6,A0A0P0Y6Q6,A0A0P0XYX7,A0A0P0XU01 C7IYK9_ORYSJ,A0A0P0XYJ6_ORYSJ,A0A0P0Y6Q6_ORYSJ,A0A0P0XYX7_ORYSJ,A0A0P0XU01_ORYSJ Os02g0325401 Os02g0325401 OSNPB_020325401,Os11g0138400 OSNPB_110138400,Os12g0135100 OSNPB_120135100,Os11g0138600 OSNPB_110138600,Os10g0344800 OSNPB_100344800 ENOG411EMPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) OSJNBb0038F03.1 protein (OSJNBb0103I08.18 protein) (Os04g0543200 protein) (cDNA clone:J033076A11, full insert sequence) (cDNA clone:J033085H02, full insert sequence) Q7X6J4 Q7X6J4_ORYSJ Os04g0543200 Os04g0543200 OSJNBb0038F03.1 OSJNBb0103I08.18 OSNPB_040543200 ENOG411EMPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411EMPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain-containing protein 3-like NA NA NA NA NA NA NA ENOG411EMPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA positive regulation of cellular response to phosphate starvation SPX domain-containing protein 1 (Protein SPX DOMAIN GENE 1) (OsSPX1) Q69XJ0 SPX1_ORYSJ SPX1 Os06g0603600 LOC_Os06g40120 OsJ_21901 P0486H12.37 FUNCTION: Involved in plant adaptation to phosphate starvation (PubMed:19000161). Inhibits PHR2 DNA-binding activity via a Pi-dependent protein interaction (PubMed:25271318). Suppresses the regulation on expression of PT2 by PHR2 and accumulation of shoot Pi (PubMed:20149131). Optimizes growth under phosphate-limited conditions through a negative feedback loop of the PSI (phosphate starvation-induced) signaling pathway (PubMed:19000161, PubMed:20149131). Regulates the expression of SPX2, SPX3 and SPX5 (PubMed:19566645). May be an important link between signal transduction pathways related to phosphate starvation and cold stress (PubMed:19000161). {ECO:0000269|PubMed:19000161, ECO:0000269|PubMed:19566645, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:25271318}. MISCELLANEOUS: SPX1 and SPX2 have redundant functions in repressing the activity of PHR2. {ECO:0000269|PubMed:25271318}. ENOG411EMPK GYRA Q9CAF6 GYRA_ARATH DNA gyrase subunit A, chloroplastic/mitochondrial (EC 5.99.1.3) Embryo defective; Cotyledon-A. Maxwell-2004 FUNCTION: A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. {ECO:0000269|PubMed:15136745}. 5.99.1.3 104538 DNA gyrase subunit A, chloroplastic/mitochondrial (EC 5.99.1.3) chloroplast [GO:0009507]; chromosome [GO:0005694]; mediator complex [GO:0016592]; mitochondrion [GO:0005739]; nucleoid [GO:0009295]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; DNA topological change [GO:0006265]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2075765; AT3G10690 DNA gyrase subunit A NA NA NA NA NA NA NA ENOG411EMPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SEC12-like protein Os07g0187700 protein (Transducin / WD-40 repeat protein-like) (cDNA clone:J023077D02, full insert sequence) Q6Z4F3 Q6Z4F3_ORYSJ Os07g0187700 OSJNBb0084L07.11 OSNPB_070187700 ENOG411EMPN IPSP Q9SCS3,F4KI56 PGML4_ARATH,SERCL_ARATH Phosphoglycerate mutase-like protein 4,Metal-independent phosphoserine phosphatase (iPSP) (EC 3.1.3.3) (Phosphoglycerate mutase-like protein 3) FUNCTION: May play a role in carbohydrates metabolism. {ECO:0000250|UniProtKB:Q9MAA2}.,FUNCTION: Phosphoglycerate mutase-like protein lacking PGM activity, but having a low metal-independent phosphoserine phosphatase activity in vitro. May be involved in serine biosynthesis. {ECO:0000269|PubMed:22337887}. ARA:AT3G50520-MONOMER; 3.1.3.3 25979,26474 Phosphoglycerate mutase-like protein 4,Metal-independent phosphoserine phosphatase (iPSP) (EC 3.1.3.3) (Phosphoglycerate mutase-like protein 3) cytosol [GO:0005829]; phosphatase activity [GO:0016791],cytosol [GO:0005829]; phosphatase activity [GO:0016791]; phosphoserine phosphatase activity [GO:0004647]; D-serine biosynthetic process [GO:0070179]; L-serine biosynthetic process [GO:0006564] locus:2098690;,locus:2146678; AT3G50520,AT5G04120 phosphoglycerate Os08g0476400 protein (cDNA, clone: J065053K09, full insert sequence) B7F8I1 B7F8I1_ORYSJ Os08g0476400 OSNPB_080476400 ENOG411EMPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMP2 F4JGC5 F4JGC5_ARATH Transmembrane protein, putative (DUF1068) 19779 Transmembrane protein, putative (DUF1068) integral component of membrane [GO:0016021] locus:2134837; AT4G04360 Protein of unknown function (DUF1068) NA NA NA NA NA NA NA ENOG411EMP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1068) NA NA NA NA NA NA NA ENOG411EMP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FYVE NA NA NA NA NA NA NA ENOG411EMP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411DVYA Q94C55,A0A1I9LQM4 Q94C55_ARATH,A0A1I9LQM4_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At3g27640),Transducin/WD40 repeat-like superfamily protein R-ATH-110314;R-ATH-8951664; 59398,57197 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At3g27640),Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2089179; AT3G27640 denticleless protein homolog Os03g0699100 protein (Fragment) Q0DPD9 Q0DPD9_ORYSJ Os03g0699100 OSNPB_030699100 ENOG411DVYB TIC22L,Tic22-III F4J469,A0A1I9LMQ7 TI22L_ARATH,A0A1I9LMQ7_ARATH Protein TIC 22-like, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 22-III) (AtTIC22-III),Tic22-like family protein FUNCTION: Involved in protein precursor import into chloroplasts. {ECO:0000250}. 34575,27473 Protein TIC 22-like, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 22-III) (AtTIC22-III),Tic22-like family protein chloroplast intermembrane space [GO:0031972]; membrane [GO:0016020]; plastid [GO:0009536]; protein transport [GO:0015031] locus:2095213; AT3G23710 Tic22-like family Os07g0290800 protein Q84ZH3 Q84ZH3_ORYSJ P0656C04.101 B1126F07.130 Os07g0290800 OSNPB_070290800 ENOG411DVYI CRSH Q84R11,A0A1I9LR76,A0A1I9LR75 CRSH_ARATH,A0A1I9LR76_ARATH,A0A1I9LR75_ARATH Probable GTP diphosphokinase CRSH, chloroplastic (EC 2.7.6.5) (Calcium-activated RelA/Spot homolog) (AtCRSH) (ppGpp synthetase CRSH),Ca2+-activated RelA/spot-like protein FUNCTION: Possesses calcium-dependent ppGpp (guanosine 3'-diphosphate 5'-diphosphate) synthetase activity in vitro and is able to functionally complement E.coli relA mutants. Plays an important role in the timing adjustment of pistil and pollen maturation required for successful pollination. May be involved in a rapid plant ppGpp-mediated response to pathogens and other stresses. {ECO:0000269|PubMed:18178586, ECO:0000269|PubMed:18535838}. MISCELLANEOUS: Plants silencing CRSH have abnormally small siliques with few seeds, due to altered timing of pistil and pollen maturation and unsuccessful pollination. {ECO:0000305|PubMed:18178586}. ARA:AT3G17470-MONOMER; 2.7.6.5 66578,68268,50662 Probable GTP diphosphokinase CRSH, chloroplastic (EC 2.7.6.5) (Calcium-activated RelA/Spot homolog) (AtCRSH) (ppGpp synthetase CRSH),Ca2+-activated RelA/spot-like protein chloroplast [GO:0009507]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; GTP diphosphokinase activity [GO:0008728]; kinase activity [GO:0016301]; guanosine tetraphosphate metabolic process [GO:0015969],chloroplast [GO:0009507]; calcium ion binding [GO:0005509]; GTP diphosphokinase activity [GO:0008728]; guanosine tetraphosphate metabolic process [GO:0015969],guanosine tetraphosphate metabolic process [GO:0015969] TISSUE SPECIFICITY: Expressed in shoots, cotyledons, rosette and cauline leaves, stems, sepals, pistils and siliques. {ECO:0000269|PubMed:18178586, ECO:0000269|PubMed:18535838}. locus:2090487; AT3G17470 Region found in RelA / SpoT proteins Probable GTP diphosphokinase CRSH1, chloroplastic (EC 2.7.6.5) (Calcium-activated RelA/Spot homolog 1) (OsCRSH1) (ppGpp synthetase CRSH1),Probable GTP diphosphokinase CRSH3, chloroplastic (EC 2.7.6.5) (Calcium-activated RelA/Spot homolog 3) (OsCRSH3) (ppGpp synthetase CRSH3),Probable GTP diphosphokinase CRSH2, chloroplastic (EC 2.7.6.5) (Calcium-activated RelA/Spot homolog 2) (OsCRSH2) (ppGpp synthetase CRSH2) Q6ATB4,Q75IS2,Q6ATB2 CRSH1_ORYSJ,CRSH3_ORYSJ,CRSH2_ORYSJ CRSH1 RELA2 Os05g0161200 LOC_Os05g06890 OsJ_17215 OSJNBa0034O12.15,CRSH3 Os05g0161800 LOC_Os05g06940 OSJNBb0099P06.1,CRSH2 Os05g0161500 LOC_Os05g06920 OSJNBa0034O12.17 FUNCTION: Possesses calcium-dependent ppGpp (guanosine 3'-diphosphate 5'-diphosphate) synthetase activity in vitro and is able to functionally complement E.coli relA mutants. May be involved in a rapid plant ppGpp-mediated response to pathogens and other stresses. {ECO:0000269|PubMed:17938177}. ENOG411DVYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinesterase NA NA NA NA NA NA NA ENOG411DVYV Q9FXC1 Q9FXC1_ARATH Pectin lyase-like superfamily protein (Putative polygalacturonase) ARA:AT1G56710-MONOMER; 47443 Pectin lyase-like superfamily protein (Putative polygalacturonase) extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2027534; AT1G56710 Polygalacturonase Os01g0296200 protein (Fragment) A0A0P0V1G9 A0A0P0V1G9_ORYSJ Os01g0296200 OSNPB_010296200 ENOG411DVYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain Sulfotransferase (EC 2.8.2.-) Q652W0,Q6YV45 Q652W0_ORYSJ,Q6YV45_ORYSJ Os06g0252800 OSNPB_060252800 P0046H10.16,P0024C06.128 Os08g0297800 OSJNBb0024C16.119 OSNPB_080297800 ENOG411EDN2 WRKY34 O65590 WRK34_ARATH Probable WRKY transcription factor 34 (WRKY DNA-binding protein 34) Mutant plants exhibited higher percentageof pollen germination than the WT under cold stress condition. Male gametophyte defective under cold stress-D. Yu-2010 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 62167 Probable WRKY transcription factor 34 (WRKY DNA-binding protein 34) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; pollen germination [GO:0009846]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] locus:2131503; AT4G26440 WRKY NA NA NA NA NA NA NA ENOG411EDN5 Q9SDA2 Q9SDA2_ARATH Plant calmodulin-binding protein-like protein (Uncharacterized protein At5g07820) (Uncharacterized protein F13G24.20) 62664 Plant calmodulin-binding protein-like protein (Uncharacterized protein At5g07820) (Uncharacterized protein F13G24.20) calmodulin binding [GO:0005516] locus:2142758; AT5G07820 Has 10966 Blast hits to 8193 proteins in 472 species Archae - 44 NA NA NA NA NA NA NA ENOG411EDN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDN8 F18P9_30 Q9M1L8,F4ICS5,F4J6N4,F4I004 Q9M1L8_ARATH,F4ICS5_ARATH,F4J6N4_ARATH,F4I004_ARATH Heat shock protein (Uncharacterized protein F18P9_30),Uncharacterized protein,Heat shock protein 35191,35391,44990,32198 Heat shock protein (Uncharacterized protein F18P9_30),Uncharacterized protein,Heat shock protein locus:2078536;,locus:2031149;,locus:2092585;,locus:2007626; AT3G42870,AT1G43720,AT3G30520,AT1G35820 NA NA NA NA NA NA NA NA ENOG411EDNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED NA NA NA NA NA NA NA ENOG411EDNS HSFA7A Q9SV12 HFA7A_ARATH Heat stress transcription factor A-7a (AtHsfA7a) (AtHsf-09) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 31776 Heat stress transcription factor A-7a (AtHsfA7a) (AtHsf-09) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of cellular protein metabolic process [GO:0032268]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; transcription, DNA-templated [GO:0006351] locus:2083690; AT3G51910 Transcription factor NA NA NA NA NA NA NA ENOG411EDNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EDNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SprT-like family NA NA NA NA NA NA NA ENOG411EDNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Predicted ATPase of the ABC class Putative multidrug resistance protein (P-glycoprotein),Os02g0190000 protein Q6YUU5,B9F3S3 MDR_ORYSJ,B9F3S3_ORYSJ Os02g0190300 LOC_Os02g09720 OSJNBb0031B09.19,Os02g0190000 OsJ_05694 OSNPB_020190000 ENOG411EDNW SBT3.11 Q1PDX5 SBT3B_ARATH Subtilisin-like protease SBT3.11 (EC 3.4.21.-) (Subtilase subfamily 3 member 11) (AtSBT3.11) ARA:AT5G11940-MONOMER; 3.4.21.- 82927 Subtilisin-like protease SBT3.11 (EC 3.4.21.-) (Subtilase subfamily 3 member 11) (AtSBT3.11) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252] locus:2143014; AT5G11940 subtilase family NA NA NA NA NA NA NA ENOG411EDNV BLH5 Q8S897,F4IFQ2 BLH5_ARATH,F4IFQ2_ARATH BEL1-like homeodomain protein 5 (BEL1-like protein 5),BEL1-like homeodomain 5 48818,50936 BEL1-like homeodomain protein 5 (BEL1-like protein 5),BEL1-like homeodomain 5 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2039605; AT2G27220 POX NA NA NA NA NA NA NA ENOG411EDNX ENT4,ENT3,ENT6,ENT5 Q9M0Y2,Q9M0Y3,Q944N8,Q9M0Y1,A0A1P8B614 ENT4_ARATH,ENT3_ARATH,ENT6_ARATH,ENT5_ARATH,A0A1P8B614_ARATH Equilibrative nucleotide transporter 4 (AtENT4) (Nucleoside transporter ENT4),Equilibrative nucleotide transporter 3 (AtENT3) (Nucleoside transporter ENT3) (Protein FLUOROURIDINE RESISTANT 1),Equilibrative nucleotide transporter 6 (AtENT6) (Nucleoside transporter ENT6),Equilibrative nucleotide transporter 5 (AtENT5) (Nucleoside transporter ENT5),Equilibrative nucleoside transporter 6 Insensitive to the uridine analogue fluorouridine. Insensitive to fluorouridine (toxic uridine analog)-T. Mohlmann-2007 FUNCTION: Nucleoside tranpsorter that can mediate uptake of adenosine, uridine, guanosine or cytidine when expressed in a heterologous system (yeast). {ECO:0000269|PubMed:15228386}.,FUNCTION: Nucleoside transporter that functions as a pyrimidine nucleoside carrier in all organs. Has high affinity for adenosine and uridine when expressed in a heterologous system (yeast). Mediates proton-dependent adenosine or uridine transport in Xenopus oocytes. {ECO:0000269|PubMed:12810710, ECO:0000269|PubMed:15228386, ECO:0000269|PubMed:17253988, ECO:0000269|PubMed:22372734}.,FUNCTION: May be involved in nucleoside transport. {ECO:0000250}. 46294,46208,46225,46295,49400 Equilibrative nucleotide transporter 4 (AtENT4) (Nucleoside transporter ENT4),Equilibrative nucleotide transporter 3 (AtENT3) (Nucleoside transporter ENT3) (Protein FLUOROURIDINE RESISTANT 1),Equilibrative nucleotide transporter 6 (AtENT6) (Nucleoside transporter ENT6),Equilibrative nucleotide transporter 5 (AtENT5) (Nucleoside transporter ENT5),Equilibrative nucleoside transporter 6 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nucleoside transmembrane transporter activity [GO:0005337]; nucleoside transport [GO:0015858],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nucleoside transmembrane transporter activity [GO:0005337],integral component of membrane [GO:0016021]; nucleoside transmembrane transporter activity [GO:0005337] TISSUE SPECIFICITY: Expressed in leaves and at lowe levels in stems and flowers. {ECO:0000269|PubMed:12810710}.,TISSUE SPECIFICITY: Expressed in root tips, vasculature of roots and leaves, and meristems of leaf primordia. Expressed in flowers and siliques. {ECO:0000269|PubMed:12810710, ECO:0000269|PubMed:17253988, ECO:0000269|PubMed:22372734}.,TISSUE SPECIFICITY: Expressed in leaves and siliques. {ECO:0000269|PubMed:12810710}. locus:2115753;,locus:2115733;,locus:2115718;,locus:2115643; AT4G05130,AT4G05120,AT4G05110,AT4G05140 Nucleoside transporter NA NA NA NA NA NA NA ENOG411EDNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411EDNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0631400 protein (Fragment) Q0JL18 Q0JL18_ORYSJ Os01g0631400 Os01g0631400 OSNPB_010631400 ENOG411EDNH NFYB2 Q9FGJ3 NFYB2_ARATH Nuclear transcription factor Y subunit B-2 (AtNF-YB-2) (Transcriptional activator HAP3B) FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. 20529 Nuclear transcription factor Y subunit B-2 (AtNF-YB-2) (Transcriptional activator HAP3B) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in flowers and siliques. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. locus:2168983; AT5G47640 nf-yb2 nf-yb2 (nuclear factor y subunit b2) NA NA NA NA NA NA NA ENOG411EDNJ MPL12.18 Q9FL24,A0A1P8BEK3,F4JQR9 Q9FL24_ARATH,A0A1P8BEK3_ARATH,F4JQR9_ARATH Serine/Threonine-kinase, putative (DUF1296) 67642,73832,83590 Serine/Threonine-kinase, putative (DUF1296) kinase activity [GO:0016301] locus:2170433;,locus:2117671; AT5G46380,AT4G18150 Protein of unknown function (DUF1296) NA NA NA NA NA NA NA ENOG411EDNM CHX6a,CHX5,CHX7 Q8GX92,Q3EDG3,Q9ZUV9 CHX6A_ARATH,CHX5_ARATH,CHX7_ARATH Cation/H(+) antiporter 6A (Protein CATION/H+ EXCHANGER 6a) (AtCHX6a),Cation/H(+) antiporter 5 (Protein CATION/H+ EXCHANGER 5) (AtCHX5),Cation/H(+) antiporter 7 (Protein CATION/H+ EXCHANGER 7) (AtCHX7) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 93395,91606,90990 Cation/H(+) antiporter 6A (Protein CATION/H+ EXCHANGER 6a) (AtCHX6a),Cation/H(+) antiporter 5 (Protein CATION/H+ EXCHANGER 5) (AtCHX5),Cation/H(+) antiporter 7 (Protein CATION/H+ EXCHANGER 7) (AtCHX7) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; cation transport [GO:0006812]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Preferentially expressed in pollen. {ECO:0000269|PubMed:15347787}.,TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:2205150;,locus:2205165;,locus:2046188; AT1G08140,AT1G08150,AT2G28170 cation H exchanger 6A NA NA NA NA NA NA NA ENOG411EDNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mo25-like NA NA NA NA NA NA NA ENOG411E719 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0312100 protein Q10ME2 Q10ME2_ORYSJ Os03g0312100 LOC_Os03g19820 OsJ_10600 OSNPB_030312100 ENOG411E718 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os04g0168100 protein A3AQZ2 A3AQZ2_ORYSJ Os04g0168100 OsJ_13793 OSNPB_040168100 ENOG411E717 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family Defensin-like protein CAL1 (OsCPT1) (Pathogen-related protein 12) (OsPR12) (Protein CADMIUM ACCUMULATION IN LEAF 1) Q6K209 CAL1_ORYSJ CAL1 CPT1 PR12 Os02g0629800 LOC_Os02g41904 B1469H02.30 OsJ_07607 FUNCTION: Plant defensin-like protein involved in accumulation of cadmium (Cd) in rice leaves. Mediates Cd efflux from cytosol into extracellular spaces via chelation. This drives Cd secretion from xylem parenchyma cells into the xylem vessels, hence lowering Cd levels in cytosol meanwhile promoting Cd translocation from roots to shoots. {ECO:0000269|PubMed:29440679}. ENOG411E716 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E715 O64693,F4IHX3 O64693_ARATH,F4IHX3_ARATH Uncharacterized protein At2g34540,Uncharacterized protein 32046,29001 Uncharacterized protein At2g34540,Uncharacterized protein locus:2062291; AT2G34540 NA NA NA NA NA NA NA NA ENOG411E714 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os02g0548100 protein,Os02g0547600 protein Q6YYG5,A0A0P0VK75 Q6YYG5_ORYSJ,A0A0P0VK75_ORYSJ OSJNBa0051E21.28 Os02g0548100 OSNPB_020548100,Os02g0547600 OSNPB_020547600 ENOG411E713 F10M6.30 O49358 O49358_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At4g32340) (Uncharacterized protein F10M6.30) (Uncharacterized protein F8B4.40) 25621 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At4g32340) (Uncharacterized protein F10M6.30) (Uncharacterized protein F8B4.40) locus:2127781; AT4G32340 NA NA NA NA NA NA NA NA ENOG411E712 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein Os06g0137400 protein (Putative auxin-induced protein TGSAUR22),Os02g0445100 protein (Putative auxin-induced protein) (cDNA clone:001-112-G12, full insert sequence) Q5VPH5,Q6EUB0 Q5VPH5_ORYSJ,Q6EUB0_ORYSJ Os06g0137400 OSJNBa0041F13.5 OSNPB_060137400 P0548D03.35,Os02g0445100 OJ1116_C12.13 OsJ_06560 OSNPB_020445100 ENOG411E711 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0517800 protein Q75II3 Q75II3_ORYSJ Os05g0517800 Os05g0517800 B1130G10.19 OsJ_19217 OSNPB_050517800 ENOG411E710 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411E71J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0231100 protein Q5NB72 Q5NB72_ORYSJ P0431F01.16 Os01g0231100 OSNPB_010231100 ENOG411E71F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0213000 protein (S5-4),Os12g0153600 protein J9Y0Y8,A0A0P0Y783 J9Y0Y8_ORYSJ,A0A0P0Y783_ORYSJ Os06g0213000 OSNPB_060213000,Os12g0153600 OSNPB_120153600 ENOG411E71E Q9C9H0 Q9C9H0_ARATH At1g68350 (Cotton fiber protein) (Uncharacterized protein T22E19.2) 19450 At1g68350 (Cotton fiber protein) (Uncharacterized protein T22E19.2) locus:2199287; AT1G68350 NA NA NA NA NA NA NA NA ENOG411E71C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AN1 domain-containing stress-associated protein Zinc finger AN1 domain-containing stress-associated protein 15 (OsSAP15) Q0DJC7 SAP15_ORYSJ SAP15 Os05g0299700 LOC_Os05g23470 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E71B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein 1589 of unknown function (A_thal_3526) NA NA NA NA NA NA NA ENOG411E71A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E71Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0766300 protein Q5ZAN5 Q5ZAN5_ORYSJ Os01g0766300 OSJNBb0053G03.3 OSNPB_010766300 ENOG411E71T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0666800 protein (cDNA clone:002-132-D09, full insert sequence) (cDNA clone:J033122J24, full insert sequence),Os02g0170701 protein (Fragment) Q655W0,A0A0P0VFD4 Q655W0_ORYSJ,A0A0P0VFD4_ORYSJ Os06g0666800 OsJ_22290 OSNPB_060666800 P0637D03.28,Os02g0170701 OSNPB_020170701 ENOG411E71R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Os02g0124000 protein,Os08g0441300 protein Q6Z711,A0A0P0XGU6 Q6Z711_ORYSJ,A0A0P0XGU6_ORYSJ Os02g0124000 OsJ_05192 OSNPB_020124000 P0575F10.22,Os08g0441300 OSNPB_080441300 ENOG411E71Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0536100 protein,Os06g0536600 protein (Fragment),Os06g0540200 protein Q5Z5E5,A0A0P0WXH4,A0A0P0WXF9 Q5Z5E5_ORYSJ,A0A0P0WXH4_ORYSJ,A0A0P0WXF9_ORYSJ Os06g0536100 OSJNBa0001B21.35 OSNPB_060536100 P0551A03.3,Os06g0536600 OSNPB_060536600,Os06g0540200 OSNPB_060540200 ENOG411EAR5 GGP4 F4INN2,A0A1P8AXE1 GGP4_ARATH,A0A1P8AXE1_ARATH Gamma-glutamyl peptidase 4 (EC 3.4.19.-),Class I glutamine amidotransferase-like superfamily protein FUNCTION: Involved in glucosinolate biosynthesis. Hydrolyzes the gamma-glutamyl peptide bond of several glutathione (GSH) conjugates to produce Cys-Gly conjugates related to glucosinolates. The gamma-Glu-Cys-Gly-GSH conjugates are the sulfur-donating molecule in glucosinolate biosynthesis. {ECO:0000250|UniProtKB:Q9M0A7}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. 3.4.19.- 28755,24737 Gamma-glutamyl peptidase 4 (EC 3.4.19.-),Class I glutamine amidotransferase-like superfamily protein cytosol [GO:0005829]; peptidase activity [GO:0008233],transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541] locus:2061481; AT2G23960 Homoserine O-succinyltransferase NA NA NA NA NA NA NA ENOG411EKU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type II intron maturase Intron maturase, type II family protein, putative, expressed (Os10g0567500 protein) Q7XC02 Q7XC02_ORYSJ OSJNBa0057L21.15 LOC_Os10g41790 Os10g0567500 OsJ_32510 OSNPB_100567500 ENOG411EKU6 A0A1P8BDW1,Q3ED23 A0A1P8BDW1_ARATH,Q3ED23_ARATH Reverse transcriptase zinc-binding protein,RNA-directed DNA polymerase (Reverse transcriptase)-related family protein 10116,24696 Reverse transcriptase zinc-binding protein,RNA-directed DNA polymerase (Reverse transcriptase)-related family protein RNA-directed DNA polymerase activity [GO:0003964] locus:2012698; AT1G33710 NA NA NA NA NA NA NA NA ENOG411EKU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH NA NA NA NA NA NA NA ENOG411EKUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EKUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Endonuclease Exonuclease Phosphatase NA NA NA NA NA NA NA ENOG411EKUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH NA NA NA NA NA NA NA ENOG411EKUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EKUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os12g0237700 protein,Os04g0204300 protein (Fragment),Os03g0643433 protein A3CG65,Q0JET7,A0A0P0W1C4 A3CG65_ORYSJ,Q0JET7_ORYSJ,A0A0P0W1C4_ORYSJ Os12g0237700 OsJ_35677 OSNPB_120237700,Os04g0204300 Os04g0204300 OSNPB_040204300,Os03g0643433 OSNPB_030643433 ENOG411EKUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family Os11g0577200 protein,Os10g0159350 protein,Os03g0424132 protein A0A0P0Y3H7,A0A0N7KRG7,A0A0P0VYV4 A0A0P0Y3H7_ORYSJ,A0A0N7KRG7_ORYSJ,A0A0P0VYV4_ORYSJ Os11g0577200 OSNPB_110577200,Os10g0159350 OSNPB_100159350,Os03g0424132 OSNPB_030424132 ENOG411EKUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EKUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0479900 protein,Os10g0388550 protein A0A0P0VJ49,A0A0P0XU52 A0A0P0VJ49_ORYSJ,A0A0P0XU52_ORYSJ Os02g0479900 OSNPB_020479900,Os10g0388550 OSNPB_100388550 ENOG411EG6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0241900 protein (cDNA clone:002-114-C06, full insert sequence) Q0J711 Q0J711_ORYSJ Os08g0241900 Os08g0241900 OSNPB_080241900 ENOG411EG6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6P Q9XI27 Q9XI27_ARATH F9L1.37 (Late embryogenesis abundant-like protein) 10395 F9L1.37 (Late embryogenesis abundant-like protein) apoplast [GO:0048046]; cytosol [GO:0005829]; nucleus [GO:0005634] locus:2823550; AT1G15415 Inherit from euNOG: late embryogenesis abundant NA NA NA NA NA NA NA ENOG411E53W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411E9D8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavone synthase NA NA NA NA NA NA NA ENOG411E9D9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM NA NA NA NA NA NA NA ENOG411E9D2 PIF6,PIL2 Q8L5W7,A0A1I9LRF0,F4IX36 PIF6_ARATH,A0A1I9LRF0_ARATH,F4IX36_ARATH Transcription factor PIF6 (Basic helix-loop-helix protein 132) (AtbHLH132) (bHLH 132) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) (Protein PHYTOCHROME-INTERACTING FACTOR 6) (Transcription factor EN 111) (bHLH transcription factor bHLH132),Phytochrome interacting factor 3-like 2 Low germination rate-K. Halliday-2010 40547,37902,35804 Transcription factor PIF6 (Basic helix-loop-helix protein 132) (AtbHLH132) (bHLH 132) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) (Protein PHYTOCHROME-INTERACTING FACTOR 6) (Transcription factor EN 111) (bHLH transcription factor bHLH132),Phytochrome interacting factor 3-like 2 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; red or far-red light signaling pathway [GO:0010017]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] locus:2098008; AT3G62090 HLH NA NA NA NA NA NA NA ENOG411E9D3 APC1,APC3 Q9FLS8,Q9LY28,F4K509 Q9FLS8_ARATH,Q9LY28_ARATH,F4K509_ARATH Mitochondrial substrate carrier family protein (Peroxisomal Ca-dependent solute carrier-like protein) (Putative peroxisomal Ca-dependent solute carrier) (Putative peroxisomal Ca-dependent solute carrier protein),Mitochondrial substrate carrier family protein (Peroxisomal Ca-dependent solute carrier-like protein),Mitochondrial substrate carrier family protein 53275,53970,36612 Mitochondrial substrate carrier family protein (Peroxisomal Ca-dependent solute carrier-like protein) (Putative peroxisomal Ca-dependent solute carrier) (Putative peroxisomal Ca-dependent solute carrier protein),Mitochondrial substrate carrier family protein (Peroxisomal Ca-dependent solute carrier-like protein),Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ADP transmembrane transporter activity [GO:0015217]; AMP transmembrane transporter activity [GO:0080122]; ATP transmembrane transporter activity [GO:0005347]; calcium ion binding [GO:0005509]; phosphate ion transmembrane transporter activity [GO:0015114]; ADP transport [GO:0015866]; AMP transport [GO:0080121]; ATP transport [GO:0015867]; mitochondrial transport [GO:0006839]; phosphate ion transmembrane transport [GO:0035435],integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; transmembrane transport [GO:0055085] locus:2159168;,locus:2183314; AT5G61810,AT5G07320 mitochondrial substrate carrier family protein NA NA NA NA NA NA NA ENOG411E9D0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle Os10g0233310 protein A0A0P0XSR3 A0A0P0XSR3_ORYSJ Os10g0233310 OSNPB_100233310 ENOG411E9DH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDA1/CD39 (nucleoside phosphatase) family NA NA NA NA NA NA NA ENOG411E9DI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411E9DB F26O13.180 Q9SCZ5,A0A1I9LNE5,A0A1I9LNE6,A0A1I9LNE4 Q9SCZ5_ARATH,A0A1I9LNE5_ARATH,A0A1I9LNE6_ARATH,A0A1I9LNE4_ARATH Mucin-5AC-like protein (Uncharacterized protein F26O13.180),Mucin-5AC-like protein 47254,41094,37134,46704 Mucin-5AC-like protein (Uncharacterized protein F26O13.180),Mucin-5AC-like protein locus:2081890; AT3G51540 NA NA NA NA NA NA NA NA ENOG411E9DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0495600 protein) Q2QQG1 Q2QQG1_ORYSJ Os12g0495600 LOC_Os12g31160 Os12g0495600 OSNPB_120495600 ENOG411DYG5 REM4,REM5,REM6 Q9SB79,Q9SB80,O81782,A0A1P8B798,A0A1P8B795,A0A1P8B943 REM4_ARATH,REM5_ARATH,REM6_ARATH,A0A1P8B798_ARATH,A0A1P8B795_ARATH,A0A1P8B943_ARATH Putative B3 domain-containing protein REM4 (Protein REPRODUCTIVE MERISTEM 4),B3 domain-containing protein REM5 (Auxin response factor 22) (Protein REPRODUCTIVE MERISTEM 5),B3 domain-containing protein REM6 (Protein REPRODUCTIVE MERISTEM 6),Transcriptional factor B3 family protein 57354,40075,56231,45136,20384,64165 Putative B3 domain-containing protein REM4 (Protein REPRODUCTIVE MERISTEM 4),B3 domain-containing protein REM5 (Auxin response factor 22) (Protein REPRODUCTIVE MERISTEM 5),B3 domain-containing protein REM6 (Protein REPRODUCTIVE MERISTEM 6),Transcriptional factor B3 family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2124864;,locus:2124879;,locus:2124889; AT4G31630,AT4G31640,AT4G31650 B3 domain-containing protein Putative B3 domain-containing protein Os04g0346900,Putative B3 domain-containing protein Os04g0347400,Os04g0347400 protein (Fragment) Q7XS75,Q7XS74,A0A0P0W8T7 Y4469_ORYSJ,Y4474_ORYSJ,A0A0P0W8T7_ORYSJ Os04g0346900 LOC_Os04g27960 OSJNBa0020I02.5,Os04g0347400 Os04g0347500 LOC_Os04g27990/LOC_Os04g28000 OsJ_14357 OSJNBa0020I02.7,Os04g0347400 OSNPB_040347400 ENOG411DYG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heat stress transcription factor Heat stress transcription factor B-4b (Heat stress transcription factor 12) (OsHSF12) (rHsf12) (Heat stress transcription factor 19) (OsHsf-19),Os07g0640900 protein (Fragment) Q7XHZ0,A0A0P0X9G9 HFB4B_ORYSJ,A0A0P0X9G9_ORYSJ HSFB4B HSF12 HSF19 Os07g0640900 LOC_Os07g44690 OJ1340_C08.141-1 OJ1340_C08.141-2 P0524G08.108-1 P0524G08.108-2,Os07g0640900 OSNPB_070640900 FUNCTION: Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. ENOG411DYG7 Q9SKS8 Q9SKS8_ARATH At2g20920/F5H14.11 (Chaperone (DUF3353)) (Uncharacterized protein At2g20920) 30480 At2g20920/F5H14.11 (Chaperone (DUF3353)) (Uncharacterized protein At2g20920) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; membrane [GO:0016020] locus:2051462; AT2G20920 Protein of unknown function (DUF3353) Os03g0137300 protein (Fragment) Q0DVC4 Q0DVC4_ORYSJ Os03g0137300 Os03g0137300 OSNPB_030137300 ENOG411DYG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os09g0562750 protein,Os09g0559500 protein (Fragment) A0A0P0XQV1,A0A0P0XQA6 A0A0P0XQV1_ORYSJ,A0A0P0XQA6_ORYSJ Os09g0562750 OSNPB_090562750,Os09g0559500 OSNPB_090559500 ENOG411DYG2 TULP10,TULP5,TULP4,TULP1,TLP10,TLP5 Q9FRH7,Q944S3,O80699,Q9ZP59,F4ICF2,A0A1P8ANS7 TLP10_ARATH,TLP5_ARATH,TLP4_ARATH,TLP1_ARATH,F4ICF2_ARATH,A0A1P8ANS7_ARATH Tubby-like F-box protein 10 (AtTLP10) (SKP1-interacting partner 26),Tubby-like F-box protein 5 (AtTLP5),Putative Tubby-like protein 4 (AtTLP4),Tubby-like F-box protein 1 (AtTLP1),Tubby-like F-box protein,Tubby like protein 5 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 50010,47845,30184,51195,29746,40400 Tubby-like F-box protein 10 (AtTLP10) (SKP1-interacting partner 26),Tubby-like F-box protein 5 (AtTLP5),Putative Tubby-like protein 4 (AtTLP4),Tubby-like F-box protein 1 (AtTLP1),Tubby-like F-box protein,Tubby like protein 5 cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plastid [GO:0009536]; phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; protein ubiquitination [GO:0016567]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620],phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620],phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15064372}.,TISSUE SPECIFICITY: Mostly expressed in roots, flowers and siliques. {ECO:0000269|PubMed:15064372}. locus:2032950;,locus:2194686;,locus:2036773;,locus:2025327; AT1G25280,AT1G43640,AT1G61940,AT1G76900 Tub family Tubby-like F-box protein 12 (OsTLP12) (Tubby-like F-box protein 2) (OsTLP2),Tubby-like F-box protein (Fragment),Os11g0163600 protein Q69U54,A0A0P0XAX1,A0A0P0XZ63 TLP12_ORYSJ,A0A0P0XAX1_ORYSJ,A0A0P0XZ63_ORYSJ TULP12 TULP2 Os08g0103300 LOC_Os08g01290 OsJ_25735 P0015C07.29,Os08g0103300 OSNPB_080103300,Os11g0163600 OSNPB_110163600 ENOG411DYG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411DYGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme Os03g0101000 protein (cDNA clone:001-102-F12, full insert sequence),Os02g0119200 protein (Putative adenosine monophosphate binding protein),Os01g0342900 protein (Putative adenosine monophosphate binding protein 1 AMPBP1) Q10T55,Q6YUT4,Q8LQW9 Q10T55_ORYSJ,Q6YUT4_ORYSJ,Q8LQW9_ORYSJ Os03g0101000 LOC_Os03g01140 OsJ_09053 OSNPB_030101000,Os02g0119200 Os02g0119200 OJ1217_F02.17 OSJNBb0088N06.1 OSNPB_020119200,Os01g0342900 Os01g0342900 B1045F02.21 OSNPB_010342900 ENOG411DYGY CLPR3 Q8L770,F4HZE0 CLPR3_ARATH,F4HZE0_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic (ClpR3) (nClpP8),ATP-dependent Clp protease proteolytic subunit DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000303|Ref.8}. 36307,40919 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic (ClpR3) (nClpP8),ATP-dependent Clp protease proteolytic subunit chloroplast [GO:0009507]; serine-type endopeptidase activity [GO:0004252],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid stroma [GO:0009532]; thylakoid [GO:0009579]; serine-type endopeptidase activity [GO:0004252] locus:2036044; AT1G09130 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit Q10LK7 Q10LK7_ORYSJ Os03g0344900 LOC_Os03g22430 OsJ_10812 OSNPB_030344900 ENOG411DYGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os11g0213500 protein (Pentatricopeptide, putative) (SMK1) Q2R8W9 Q2R8W9_ORYSJ Os11g0213500 LOC_Os11g10740 Os11g0213500 OsJ_33354 OSNPB_110213500 ENOG411DYGU ZIP10,ZIP7 Q8W245,Q8W246 ZIP10_ARATH,ZIP7_ARATH Probable zinc transporter 10 (ZRT/IRT-like protein 10),Zinc transporter 7 (ZRT/IRT-like protein 7) FUNCTION: Probably mediates zinc uptake from the rhizosphere. {ECO:0000250}. 39489,39378 Probable zinc transporter 10 (ZRT/IRT-like protein 10),Zinc transporter 7 (ZRT/IRT-like protein 7) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385]; zinc II ion transmembrane transport [GO:0071577] locus:2197520;,locus:2827434; AT1G31260,AT2G04032 transporter Fe(2+) transport protein 1 (Fe(II) transport protein 1) (Iron-regulated transporter 1) (OsIRT1),Fe(2+) transport protein 2 (Fe(II) transport protein 2) (Iron-regulated transporter 2) (OsIRT2) Q75HB1,Q6L8G1 IRT1_ORYSJ,IRT2_ORYSJ IRT1 Os03g0667500 LOC_Os03g46470 OSJNBa0056E06.2 OSJNBb0036M02.13,IRT2 Os03g0667300 LOC_Os03g46454 OsJ_12018 OSJNBb0036M02.15 FUNCTION: Iron transporter involved in the uptake of iron from the rhizosphere across the plasma membrane in the root epidermal layer. May also transport other divalent cations. {ECO:0000269|PubMed:16412081, ECO:0000269|PubMed:19183299}.,FUNCTION: Iron transporter that may play a role in the uptake of iron from the rhizosphere across the plasma membrane in the root epidermal layer. {ECO:0000269|PubMed:16412081}. MISCELLANEOUS: Plants overexpressing IRT1 show enhanced tolerance to iron deficiency at the seedling stage, elevated content of cadmium, iron and zinc in roots, shoots and mature seeds, and are sensitive to an excess of zinc or cadmium. ENOG411DYGV Q8L475 Q8L475_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g74640) 41058 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g74640) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; hydrolase activity [GO:0016787] locus:2019170; AT1G74640 Inherit from NOG: Alpha beta hydrolase Os09g0413700 protein (Fragment),Os09g0413700 protein Q0J1T5,Q6ES31 Q0J1T5_ORYSJ,Q6ES31_ORYSJ Os09g0413700 Os09g0413700 OSNPB_090413700,P0643D11.24-1 Os09g0413700 OSNPB_090413700 ENOG411DYGW O81424 O81424_ARATH Myb/SANT-like DNA-binding domain protein (T2H3.2) (Uncharacterized protein At4g02210) 51489 Myb/SANT-like DNA-binding domain protein (T2H3.2) (Uncharacterized protein At4g02210) DNA binding [GO:0003677] locus:2137834; AT4G02210 NA NA NA NA NA NA NA NA ENOG411DYGP Q9SU17,Q9SI11 Q9SU17_ARATH,Q9SI11_ARATH At4g12690 (DUF868 family protein (DUF868)) (Uncharacterized protein At4g12690) (Uncharacterized protein T20K18.40),DUF868 family protein (DUF868) (Uncharacterized protein At2g04220) 32794,35082 At4g12690 (DUF868 family protein (DUF868)) (Uncharacterized protein At4g12690) (Uncharacterized protein T20K18.40),DUF868 family protein (DUF868) (Uncharacterized protein At2g04220) plasmodesma [GO:0009506] locus:2135758;,locus:2055988; AT4G12690,AT2G04220 Plant protein of unknown function (DUF868) Os02g0198800 protein (Fragment) A0A0P0VG60 A0A0P0VG60_ORYSJ Os02g0198800 OSNPB_020198800 ENOG411DYGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0168800 protein (Putative serine/threonine protein kinase) (cDNA clone:J023055H24, full insert sequence),Os06g0168800 protein (Fragment) Q5VRF2,A0A0N7KLL6 Q5VRF2_ORYSJ,A0A0N7KLL6_ORYSJ Os06g0168800 Os06g0168800 OSJNBa0033B09.22 OSNPB_060168800 P0680A03.43,Os06g0168800 OSNPB_060168800 ENOG411DYGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dicer-like endonuclease involved in cleaving double- stranded RNA in the RNA interference (RNAi) pathway. Produces 21 to 25 bp dsRNAs (siRNAs) which target the selective destruction of homologous RNAs leading to sequence-specific suppression of gene expression called post-transcriptional gene silencing (PTGS). Part of a broad host defense response against viral infection and transposons NA NA NA NA NA NA NA ENOG411DYGM PAP10 Q9SIV9 PPA10_ARATH Purple acid phosphatase 10 (EC 3.1.3.2) ARA:AT2G16430-MONOMER; 3.1.3.2 54219 Purple acid phosphatase 10 (EC 3.1.3.2) cell wall [GO:0005618]; cytosol [GO:0005829]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; cellular response to phosphate starvation [GO:0016036] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2042689; AT2G16430 Purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2),Os01g0776600 protein (Fragment),Purple acid phosphatase (EC 3.1.3.2) (Fragment) Q8LJ43,A0A0P0V8T5,A0A0P0V8Z3 Q8LJ43_ORYSJ,A0A0P0V8T5_ORYSJ,A0A0P0V8Z3_ORYSJ Os01g0776600 OsJ_03653 OSNPB_010776600 P0413G02.19,Os01g0776600 OSNPB_010776600 ENOG411DYGN NodGS F4J9A0 F4J9A0_ARATH Nodulin/glutamine synthase-like protein 94386 Nodulin/glutamine synthase-like protein cytosol [GO:0005829]; gamma-tubulin binding [GO:0043015]; hydrolase activity [GO:0016787]; protein self-association [GO:0043621]; glutamine biosynthetic process [GO:0006542]; lateral root formation [GO:0010311]; response to abscisic acid [GO:0009737]; response to bacterium [GO:0009617]; root cap development [GO:0048829] locus:2101983; AT3G53180 Amidohydrolase Os10g0456500 protein (cDNA clone:J013075P13, full insert sequence),Os10g0456500 protein Q0IX96,A0A0P0XV76 Q0IX96_ORYSJ,A0A0P0XV76_ORYSJ Os10g0456500 Os10g0456500 OsJ_31769 OSNPB_100456500,Os10g0456500 OSNPB_100456500 ENOG411DYGH WOX12 Q8GY25,A0A1P8BCH3 WOX12_ARATH,A0A1P8BCH3_ARATH WUSCHEL-related homeobox 12,WUSCHEL related homeobox 12 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. 29714,29585 WUSCHEL-related homeobox 12,WUSCHEL related homeobox 12 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; adventitious root development [GO:0048830]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2175941; AT5G17810 homeobox WUSCHEL-related homeobox 6 (OsWOX6),Homeobox domain containing protein, expressed (Os03g0325600 protein) (cDNA clone:002-174-E11, full insert sequence) Q10M29,Q10M28 WOX6_ORYSJ,Q10M28_ORYSJ WOX6 Os03g0325600 LOC_Os03g20910,Os03g0325600 LOC_Os03g20910 OSNPB_030325600 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411DYGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF707) Os07g0414700 protein A0A0P0X4X9 A0A0P0X4X9_ORYSJ Os07g0414700 OSNPB_070414700 ENOG411DYGJ Y-2 Q9LK32 Y3721_ARATH Uncharacterized protein At3g27210 26001 Uncharacterized protein At3g27210 plasma membrane [GO:0005886] TISSUE SPECIFICITY: Expressed in stems, rosette leaves and roots and weakly in inflorescences. {ECO:0000269|PubMed:15618630}. locus:2086533; AT3G27210 NA Os01g0920100 protein (cDNA clone:J023026C15, full insert sequence) Q5JJJ8 Q5JJJ8_ORYSJ Os01g0920100 Os01g0920100 B1793G04.5 OsJ_04568 OSNPB_010920100 P0678F11.32 ENOG411DYGK BGLU40 Q9FZE0 BGL40_ARATH Beta-glucosidase 40 (AtBGLU40) (EC 3.2.1.21) ARA:AT1G26560-MONOMER; R-ATH-189085; 3.2.1.21 58125 Beta-glucosidase 40 (AtBGLU40) (EC 3.2.1.21) apoplast [GO:0048046]; chloroplast [GO:0009507]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657] locus:2197960; AT1G26560 beta-glucosidase Beta-glucosidase 6 (Os3bglu6) (EC 3.2.1.21),Beta-glucosidase 34 (Os10bglu34) (EC 3.2.1.21) Q8L7J2,Q339X2 BGL06_ORYSJ,BGL34_ORYSJ BGLU6 Os03g0212800 LOC_Os03g11420,BGLU34 Os10g0323500 LOC_Os10g17650 OsJ_31060 OSJNBa0065C16.15 FUNCTION: Hydrolyzes glycosides, oligosaccharides and hydrophobic glycosides (PubMed:19587102). Possesses gibberellin ester beta-D-glucosidase activity. Can hydrolyze gibberellin A4 beta-D-glucosyl ester in vitro (PubMed:23811195). {ECO:0000269|PubMed:19587102, ECO:0000269|PubMed:23811195}. ENOG411DYGE Q9C7F9,Q9FYG0 MT127_ARATH,Q9FYG0_ARATH Probable methyltransferase At1g27930 (EC 2.1.1.-),At1g67330 (F1N21.15) (Glucuronoxylan 4-O-methyltransferase-like protein (DUF579)) (Uncharacterized protein At1g67330) 2.1.1.- 32356,32474 Probable methyltransferase At1g27930 (EC 2.1.1.-),At1g67330 (F1N21.15) (Glucuronoxylan 4-O-methyltransferase-like protein (DUF579)) (Uncharacterized protein At1g67330) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; methyltransferase activity [GO:0008168]; xylan biosynthetic process [GO:0045492],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; methyltransferase activity [GO:0008168]; xylan biosynthetic process [GO:0045492] locus:2010449;,locus:2019519; AT1G27930,AT1G67330 Pfam:DUF579 Os11g0490100 protein (cDNA clone:002-152-C10, full insert sequence) Q2R441 Q2R441_ORYSJ LOC_Os11g29780 Os11g0490100 OSNPB_110490100 ENOG411DYGF Q84WK2,B3H607 Q84WK2_ARATH,B3H607_ARATH At1g44770 (Elongation factor) (Uncharacterized protein At1g44770),Elongation factor 30758,30629 At1g44770 (Elongation factor) (Uncharacterized protein At1g44770),Elongation factor translation elongation factor activity [GO:0003746] locus:2194829; AT1G44770 NA Expressed protein (Os03g0701600 protein) (cDNA clone:J023082E03, full insert sequence) Q53RH1 Q53RH1_ORYSJ LOC_Os03g49490 Os03g0701600 OSNPB_030701600 ENOG411DYGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0561000 protein (Fragment) A0A0P0XXT3 A0A0P0XXT3_ORYSJ Os10g0561000 OSNPB_100561000 ENOG411DYGC AXY4 O04523 TBL27_ARATH Protein ALTERED XYLOGLUCAN 4 (Protein trichome birefringence-like 27) DISRUPTION PHENOTYPE: No visible phenotype. Loss of O-acetylated xyloglucan oligosaccharides in roots and rosette leaves, but no effect on xyloglucan O-acetylation in seeds. {ECO:0000269|PubMed:22086088}. FUNCTION: Involved in xyloglucan specific O-acetylation in roots and rosette leaves. {ECO:0000269|PubMed:20657172, ECO:0000269|PubMed:22086088}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}.; MISCELLANEOUS: A naturally occurring ecotype (cv. Ty-0) lacks AXY4-mediated xyloglucan O-acetylation due to 2 amino acid changes, Asp367Glu and Gly368Lys (PubMed:22086088). {ECO:0000305|PubMed:22086088}. 47474 Protein ALTERED XYLOGLUCAN 4 (Protein trichome birefringence-like 27) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; xyloglucan metabolic process [GO:0010411] locus:2020628; AT1G70230 Pfam:DUF231 Os09g0375300 protein,Leaf senescence protein-like (Os06g0235200 protein) (cDNA, clone: J065041L24, full insert sequence) Q0J265,Q67V91 Q0J265_ORYSJ,Q67V91_ORYSJ Os09g0375300 OSNPB_090375300,Os06g0235200 OSJNBa0080E19.21 OSJNBb0061B07.36 OSNPB_060235200 ENOG411EBV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411ECDP Q8LPL3,F4K6Z5,F4K6Z4,F4K6Z6 Q8LPL3_ARATH,F4K6Z5_ARATH,F4K6Z4_ARATH,F4K6Z6_ARATH Ascorbate oxidase-like protein (L-ascorbate oxidase, putative) (Plant L-ascorbate oxidase),Plant L-ascorbate oxidase ARA:AT5G21100-MONOMER; 64266,65839,60796,44615 Ascorbate oxidase-like protein (L-ascorbate oxidase, putative) (Plant L-ascorbate oxidase),Plant L-ascorbate oxidase extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722],extracellular region [GO:0005576]; copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491] locus:2178973;,locus:505006625; AT5G21100,AT5G21105 l-ascorbate oxidase NA NA NA NA NA NA NA ENOG411ECDU FBL25 Q9LYZ2,Q9LYZ4,Q1PE04,A0A1P8BAD4,F4KDV0 FBL80_ARATH,FBL79_ARATH,FBL25_ARATH,A0A1P8BAD4_ARATH,F4KDV0_ARATH Putative F-box/LRR-repeat protein At5g02930,F-box/LRR-repeat protein At5g02910,F-box/LRR-repeat protein 25,F-box/RNI-like superfamily protein 53950,51846,29672,41734,39659 Putative F-box/LRR-repeat protein At5g02930,F-box/LRR-repeat protein At5g02910,F-box/LRR-repeat protein 25,F-box/RNI-like superfamily protein integral component of membrane [GO:0016021] locus:2151261;,locus:2151231;,locus:2151246; AT5G02930,AT5G02910,AT5G02920 f-box family NA NA NA NA NA NA NA ENOG411ECDV BAP1 Q941L2 BAP1_ARATH BON1-associated protein 1 DISRUPTION PHENOTYPE: Dwarf, twisted leaves and enhanced disease resistance to bacterial and oomycete pathogens in cv. Columbia when grown under constant loght at 22 degrees Celsius. No visible phenotype when grown at 28 degrees Celsius. Accelerated hypersensitive response (HR). Bap1 and bap2 double mutant is seedling lethal. {ECO:0000269|PubMed:17018034, ECO:0000269|PubMed:17631528}. Enhanced disease resistance to bacterial and oomycete pathogens. Small, curled leaves; Resistant to disease-J. Hua-2006 FUNCTION: Negative regulator of cell death and defense responses. Exhibits calcium-dependent phospholipid binding properties. {ECO:0000269|PubMed:17018034, ECO:0000269|PubMed:17631528}. MISCELLANEOUS: Overexpression of BAP1 can suppress a defect in BON1 and confers more susceptibility to virulent pathogens. 21992 BON1-associated protein 1 cell [GO:0005623]; membrane [GO:0016020]; phospholipid binding [GO:0005543]; cellular homeostasis [GO:0019725]; defense response [GO:0006952]; negative regulation of defense response [GO:0031348]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to salicylic acid [GO:0009751]; response to temperature stimulus [GO:0009266]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:11544183}. locus:2098931; AT3G61190 C2 NA NA NA NA NA NA NA ENOG411ECDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECDB B'EPSILON Q9SV41,A0A1I9LQQ0 2A5E_ARATH,A0A1I9LQQ0_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform (AtB' epsilon) (PP2A, B' subunit, epsilon isoform),Protein phosphatase 2A regulatory B subunit family protein FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000250|UniProtKB:Q13362}.,FUNCTION: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000256|PIRNR:PIRNR028043}. R-ATH-198753;R-ATH-202670;R-ATH-5673000;R-ATH-5675221; 57545,46483 Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform (AtB' epsilon) (PP2A, B' subunit, epsilon isoform),Protein phosphatase 2A regulatory B subunit family protein cytoplasm [GO:0005737]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; signal transduction [GO:0007165],protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:12068121}. locus:2082677; AT3G54930 Protein phosphatase 2A regulatory B subunit (B56 family) NA NA NA NA NA NA NA ENOG411ECDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ShKT NA NA NA NA NA NA NA ENOG411ECDE BT5 Q6EJ98 BT5_ARATH BTB/POZ and TAZ domain-containing protein 5 (BTB and TAZ domain protein 5) Reduced seed set and shortened siliques. Phenotype is identical to bt2-3/+;bt3-1/+,Embryo lethal - not recovered.,same as smb-3 single mutant FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. PATHWAY: Protein modification; protein ubiquitination. 42314 BTB/POZ and TAZ domain-containing protein 5 (BTB and TAZ domain protein 5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; calmodulin binding [GO:0005516]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; ubiquitin protein ligase binding [GO:0031625]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to chitin [GO:0010200]; response to cold [GO:0009409]; response to hydrogen peroxide [GO:0042542]; response to salicylic acid [GO:0009751] TISSUE SPECIFICITY: Preferentially expressed in young leaves, roots and stems. {ECO:0000269|PubMed:15316289, ECO:0000269|PubMed:19054356}. locus:2120056; AT4G37610 BTB and TAZ domain protein 5 NA NA NA NA NA NA NA ENOG411ECDF GILT Q9SV79,Q0V809,Q9SV73,Q8VY56,F4JRI7 Q9SV79_ARATH,Q0V809_ARATH,Q9SV73_ARATH,Q8VY56_ARATH,F4JRI7_ARATH Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (Uncharacterized protein AT4g12900),At4g12890 (Gamma interferon responsive lysosomal thiol (GILT) reductase family protein),AT4g12960/F25G13_50 (Gamma interferon responsive lysosomal thiol (GILT) reductase family protein) (Uncharacterized protein At4g12960),Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (Uncharacterized protein At4g12870),Gamma interferon responsive lysosomal thiol (GILT) reductase family protein FUNCTION: Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. {ECO:0000250|UniProtKB:Q5XJN2}. R-ATH-2132295; 26025,26301,26082,25707,27197 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (Uncharacterized protein AT4g12900),At4g12890 (Gamma interferon responsive lysosomal thiol (GILT) reductase family protein),AT4g12960/F25G13_50 (Gamma interferon responsive lysosomal thiol (GILT) reductase family protein) (Uncharacterized protein At4g12960),Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (Uncharacterized protein At4g12870),Gamma interferon responsive lysosomal thiol (GILT) reductase family protein locus:2123286;,locus:2135813;,locus:2135783;,locus:2123251; AT4G12900,AT4G12890,AT4G12960,AT4G12870 gamma interferon responsive lysosomal thiol reductase family protein NA NA NA NA NA NA NA ENOG411ECDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os02g0597300 protein (Fragment) A0A0P0VLE4 A0A0P0VLE4_ORYSJ Os02g0597300 OSNPB_020597300 ENOG411ECDH MMI9.7 Q5XUX8,A0A1P8BB91,F4K6K7 Q5XUX8_ARATH,A0A1P8BB91_ARATH,F4K6K7_ARATH Cell cycle regulated microtubule associated protein 43250,41192,41550 Cell cycle regulated microtubule associated protein microtubule [GO:0005874]; spindle [GO:0005819]; activation of protein kinase activity [GO:0032147]; regulation of mitotic spindle organization [GO:0060236] locus:2167963;,locus:2182845; AT5G62240,AT5G07170 Cell cycle regulated microtubule associated protein NA NA NA NA NA NA NA ENOG411ECDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411ECDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0565800 protein,Os09g0565900 protein (Fragment) Q650W0,A0A0P0XQD9 Q650W0_ORYSJ,A0A0P0XQD9_ORYSJ Os09g0565800 OJ1155_H10.2 OsJ_30378 OSJNBa0070E11.11 OSNPB_090565800,Os09g0565900 OSNPB_090565900 ENOG411ECDM Q1PEF0 Q1PEF0_ARATH WRKY transcription factor-like protein 8813 WRKY transcription factor-like protein locus:2102524; AT3G56390 WRKY NA NA NA NA NA NA NA ENOG411ECD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411ECD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411ECD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411ECD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os01g0885800 protein A0A0P0VBH3 A0A0P0VBH3_ORYSJ Os01g0885800 OSNPB_010885800 ENOG411ECD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411ECD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LrgB-like family Os01g0511600 protein (cDNA clone:J013132P06, full insert sequence) B7EKF2 B7EKF2_ORYSJ Os01g0511600 OSNPB_010511600 ENOG411ECD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411ECD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase OSJNBb0108J11.18 protein (Os04g0419700 protein) Q7XQX5 Q7XQX5_ORYSJ Os04g0419700 OsJ_14784 OSJNBb0108J11.18 OSNPB_040419700 ENOG411ECD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411ECD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein NBS-LRR-like protein (Os08g0296600 protein) (Putative bacterial blight-resistance protein Xa1) (cDNA clone:J013067B14, full insert sequence) Q8LL83 Q8LL83_ORYSJ YR14 P0024C06.101 Os08g0296600 OJ1212_C09.23 OsJ_26798 OSNPB_080296600 ENOG411DVWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411EIEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EIEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Extensin like protein (Os01g0309100 protein) (cDNA clone:J033094P20, full insert sequence) Q655C3 Q655C3_ORYSJ Os01g0309100 Os01g0309100 OSJNBa0008D05.23 OSNPB_010309100 P0551A11.3 ENOG411EIE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L33 NA NA NA NA NA NA NA ENOG411EIE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E43C F4JFZ6 F4JFZ6_ARATH HAT transposon superfamily protein 14334 HAT transposon superfamily protein locus:504955412; AT4G08267 Pfam:hATC NA NA NA NA NA NA NA ENOG411ED2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411ED2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ED2M F4IKM1 TRNHB_ARATH Tropinone reductase homolog At2g29340 (EC 1.1.1.-) 1.1.1.- 32900 Tropinone reductase homolog At2g29340 (EC 1.1.1.-) oxidoreductase activity [GO:0016491] locus:2042982; AT2G29340 tropinone reductase NA NA NA NA NA NA NA ENOG411ED2Q TOPP7 O82733 PP17_ARATH Serine/threonine-protein phosphatase PP1 isozyme 7 (EC 3.1.3.16) FUNCTION: Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro. {ECO:0000269|PubMed:21222654}. 3.1.3.16 37705 Serine/threonine-protein phosphatase PP1 isozyme 7 (EC 3.1.3.16) metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721] TISSUE SPECIFICITY: Expressed in roots, rosettes and flowers. locus:3356119; AT5G43380 serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411ED2R ATL27 Q9FKX5,A0A1P8BH13,A0A1P8BH11,F4JZ26 NIPL1_ARATH,A0A1P8BH13_ARATH,A0A1P8BH11_ARATH,F4JZ26_ARATH NEP1-interacting protein-like 1 (RING-H2 finger protein ATL27),RING/U-box superfamily protein FUNCTION: May be involved in the early steps of the plant defense signaling pathway. 24115,23091,20263,26942 NEP1-interacting protein-like 1 (RING-H2 finger protein ATL27),RING/U-box superfamily protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; response to chitin [GO:0010200] locus:2156867; AT5G66070 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411ED2Y SDP1L Q9M1I6 SDP1L_ARATH Triacylglycerol lipase SDP1L (EC 3.1.1.3) (Protein SDP1-LIKE) FUNCTION: May be involved in the release of fatty acids from the oil body in germinating seedlings. Can hydrolyze triacylglycerols in vitro. {ECO:0000269|PubMed:19136267}. ARA:AT3G57140-MONOMER; 3.1.1.3 89934 Triacylglycerol lipase SDP1L (EC 3.1.1.3) (Protein SDP1-LIKE) integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; triglyceride lipase activity [GO:0004806]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Highly expressed in mature pollen. {ECO:0000269|PubMed:19136267}. locus:2080610; AT3G57140 Domain of unknown function (DUF3336) NA NA NA NA NA NA NA ENOG411ED2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alginate lyase NA NA NA NA NA NA NA ENOG411ED2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED22 Q8GUK2,Q8GW47 Q8GUK2_ARATH,Q8GW47_ARATH Afadin/alpha-actinin-binding protein,Afadin/alpha-actinin-binding protein (At2g18870) 32370,43509 Afadin/alpha-actinin-binding protein,Afadin/alpha-actinin-binding protein (At2g18870) microtubule associated complex [GO:0005875] locus:1005716658; AT2G18876 Afadin- and alpha -actinin-Binding NA NA NA NA NA NA NA ENOG411DZRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) Expressed protein (Os12g0155100 protein) (cDNA clone:001-027-G07, full insert sequence),Expressed protein (Os11g0153500 protein) (cDNA clone:002-140-C01, full insert sequence) Q2QXI9,Q53LV0 Q2QXI9_ORYSJ,Q53LV0_ORYSJ Os12g0155100 LOC_Os12g05890 Os12g0155100 OsJ_35267 OSNPB_120155100,Os11g0153500 LOC_Os11g05550 Os11g0153500 OSNPB_110153500 ENOG411E0CU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os03g0122100 protein A0A0N7KGH6 A0A0N7KGH6_ORYSJ Os03g0122100 OSNPB_030122100 ENOG411E88T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0207700 protein (Fragment) Q0IYI4 Q0IYI4_ORYSJ Os10g0207700 OSNPB_100207700 ENOG411E19D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E33G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mariner sub-class Os01g0541250 protein,Os11g0505400 protein,Os05g0561200 protein,Os01g0275000 protein A0A0P0V3R9,A0A0P0Y2K9,A0A0N7KL86,A0A0P0V0V9 A0A0P0V3R9_ORYSJ,A0A0P0Y2K9_ORYSJ,A0A0N7KL86_ORYSJ,A0A0P0V0V9_ORYSJ Os01g0541250 OSNPB_010541250,Os11g0505400 OSNPB_110505400,Os05g0561200 OSNPB_050561200,Os01g0275000 OSNPB_010275000 ENOG411E3NP RPL35B,RPL35C,RPL35A,RPL35D O80626,Q9M3D2,Q9SF53,Q9LZ41,A0A1I9LSB4,F4KDR2 RL352_ARATH,RL353_ARATH,RL351_ARATH,RL354_ARATH,A0A1I9LSB4_ARATH,F4KDR2_ARATH 60S ribosomal protein L35-2,60S ribosomal protein L35-3,60S ribosomal protein L35-1,60S ribosomal protein L35-4,Ribosomal L29 family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 14231,14177,14285,14331,11498,17021 60S ribosomal protein L35-2,60S ribosomal protein L35-3,60S ribosomal protein L35-1,60S ribosomal protein L35-4,Ribosomal L29 family protein cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2039802;,locus:2100686;,locus:2074974;,locus:2181753; AT2G39390,AT3G55170,AT3G09500,AT5G02610 60S ribosomal protein Os02g0503400 protein (Putative 60S ribosomal protein L35) (cDNA clone:001-025-A09, full insert sequence) (cDNA clone:002-157-D08, full insert sequence),OSJNBb0006N15.8 protein (Os04g0376000 protein) (cDNA clone:J013000G06, full insert sequence) Q6K667,Q7XMJ1 Q6K667_ORYSJ,Q7XMJ1_ORYSJ Os02g0503400 Os02g0503400 OJ1003_F04.3 OJ1126_B06.24 OsJ_06835 OSNPB_020503400,Os04g0376000 OSJNBb0006N15.8 OSNPB_040376000 ENOG411E3NW LBD37,LBD38 Q9FN11,Q9SN23 LBD37_ARATH,LBD38_ARATH LOB domain-containing protein 37 (ASYMMETRIC LEAVES 2-like protein 39) (AS2-like protein 39),LOB domain-containing protein 38 (ASYMMETRIC LEAVES 2-like protein 40) (AS2-like protein 40) Elevated anthocyanin levels in response to nitrogen-W. Scheible-2009 27113,26722 LOB domain-containing protein 37 (ASYMMETRIC LEAVES 2-like protein 39) (AS2-like protein 39),LOB domain-containing protein 38 (ASYMMETRIC LEAVES 2-like protein 40) (AS2-like protein 40) nitrogen compound metabolic process [GO:0006807]; simple leaf morphogenesis [GO:0060776] TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. locus:2158247;,locus:2083063; AT5G67420,AT3G49940 lob domain-containing protein Expressed protein (LOB domain protein 37, putative, expressed) (Os03g0445700 protein) (cDNA clone:J023106M18, full insert sequence),Os07g0589000 protein (Putative lateral organ boundaries (LOB) domain protein 37) (cDNA clone:J023030F23, full insert sequence) Q6AV61,Q7EZ26 Q6AV61_ORYSJ,Q7EZ26_ORYSJ OSJNBa0035N15.7 LOC_Os03g33090 Os03g0445700 OsJ_11413 OSNPB_030445700,Os07g0589000 OSJNBb0005G07.123 OSNPB_070589000 ENOG411E3NZ Q8GYI5 Q8GYI5_ARATH LYR motif protein (Uncharacterized protein At4g02425) 29024 LYR motif protein (Uncharacterized protein At4g02425) locus:1005716277; AT4G02425 NA Os01g0316500 protein (cDNA clone:J013112E08, full insert sequence) Q656G9 Q656G9_ORYSJ Os01g0316500 B1012D10.48 OSNPB_010316500 ENOG411E3NX MBK23.15 Q9FFR5,Q8LGF9 Q9FFR5_ARATH,Q8LGF9_ARATH Gb|AAF24581.1 (Lactoylglutathione lyase / glyoxalase I family protein) (Uncharacterized protein At5g41650) (Uncharacterized protein At5g41650/MBK23_15),At1g64185 (Lactoylglutathione lyase / glyoxalase I family protein) 12861,13068 Gb|AAF24581.1 (Lactoylglutathione lyase / glyoxalase I family protein) (Uncharacterized protein At5g41650) (Uncharacterized protein At5g41650/MBK23_15),At1g64185 (Lactoylglutathione lyase / glyoxalase I family protein) lyase activity [GO:0016829] locus:2160517;,locus:505006200; AT5G41650,AT1G64185 lactoylglutathione lyase family protein glyoxalase I family protein Lactoylglutathione lyase-like (Os06g0158700 protein) (cDNA clone:J033122C11, full insert sequence) Q5VMX8 Q5VMX8_ORYSJ KMK0024M20.36 Os06g0158700 OSNPB_060158700 P0702F05.22 ENOG411E3NK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0257100 protein,Os08g0256700 protein (cDNA clone:002-151-E01, full insert sequence),Os08g0404500 protein (cDNA clone:002-153-C05, full insert sequence) (cDNA clone:J033132H06, full insert sequence),Os08g0404400 protein (Fragment),Os08g0396500 protein (Fragment) Q6Z584,Q6Z586,Q6ZBD8,C7J5J3,A0A0P0XFY3 Q6Z584_ORYSJ,Q6Z586_ORYSJ,Q6ZBD8_ORYSJ,C7J5J3_ORYSJ,A0A0P0XFY3_ORYSJ OSJNBa0005L24.29 Os08g0257100 OSNPB_080257100,Os08g0256700 Os08g0256700 OSJNBa0005L24.22 OSNPB_080256700,Os08g0404500 OJ1118_A03.27 OSNPB_080404500 P0685B10.17,Os08g0404400 Os08g0404400 OSNPB_080404400,Os08g0396500 OSNPB_080396500 ENOG411E3NI AtENODL19,ENODL19 Q39131,Q9STZ8,F4JRH9 LAML_ARATH,Q9STZ8_ARATH,F4JRH9_ARATH Lamin-like protein,At4g12880 (Blue copper-binding protein, 15K (Lamin)) (Early nodulin-like protein 19),Early nodulin-like protein 19 19435,16133,12010 Lamin-like protein,At4g12880 (Blue copper-binding protein, 15K (Lamin)) (Early nodulin-like protein 19),Early nodulin-like protein 19 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; electron carrier activity [GO:0009055],anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; electron carrier activity [GO:0009055],electron carrier activity [GO:0009055] locus:2150951;,locus:2135798; AT5G15350,AT4G12880 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411DVIT LHCA2 Q9SYW8,F4K8I1 LHCA2_ARATH,F4K8I1_ARATH Photosystem I chlorophyll a/b-binding protein 2, chloroplastic (Lhca2) (LHCI type III LHCA2),Chlorophyll a-b binding protein, chloroplastic DISRUPTION PHENOTYPE: Depletion of LHCA3 levels (at protein level). {ECO:0000269|PubMed:11553743}. FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated, here photosystem I. {ECO:0000269|PubMed:21806943}.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. 27755,18948 Photosystem I chlorophyll a/b-binding protein 2, chloroplastic (Lhca2) (LHCI type III LHCA2),Chlorophyll a-b binding protein, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to low light intensity stimulus [GO:0009645],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; chlorophyll binding [GO:0016168]; photosynthesis, light harvesting [GO:0009765]; protein-chromophore linkage [GO:0018298] locus:2082767;,locus:2146544; AT3G61470,AT5G28450 Chlorophyll a-b binding protein Chlorophyll a-b binding protein, chloroplastic,Os07g0577600 protein Q6ZL95,A0A0P0X8B5 Q6ZL95_ORYSJ,A0A0P0X8B5_ORYSJ OJ1065_B06.19-1 Os07g0577600 OsJ_24861 OSNPB_070577600,Os07g0577600 OSNPB_070577600 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DVIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root cap Os01g0968400 protein (Putative root cap protein 1),Os04g0249700 protein (Fragment) Q8S9Z9,Q0JEL2 Q8S9Z9_ORYSJ,Q0JEL2_ORYSJ OJ1656_A11.12 Os01g0968400 OSNPB_010968400,Os04g0249700 Os04g0249700 OSNPB_040249700 ENOG411DVIQ TBL3 Q8LED3 TBL3_ARATH Protein trichome birefringence-like 3 DISRUPTION PHENOTYPE: Reduction in inflorescence stem elongation. {ECO:0000269|PubMed:20388664}. Short, thin inflorescence stems-W. Scheible-2010 FUNCTION: Involved in secondary cell wall cellulose deposition. Required for normal stem development. May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins or maybe in the specific O-acetylation of cell wall polymers. {ECO:0000269|PubMed:20388664, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 49829 Protein trichome birefringence-like 3 Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; xylan O-acetyltransferase activity [GO:1990538]; cellulose biosynthetic process [GO:0030244]; pectin biosynthetic process [GO:0045489]; plant-type cell wall modification [GO:0009827]; xylan biosynthetic process [GO:0045492] locus:2179172; AT5G01360 Pfam:DUF231 Expressed protein (Os03g0291200 protein) (cDNA clone:002-173-A08, full insert sequence) Q10MX4 Q10MX4_ORYSJ Os03g0291200 LOC_Os03g18120 Os03g0291200 OSNPB_030291200 ENOG411DVIP Q9FHD1 Q9FHD1_ARATH At5g52280 (Hyaluronan mediated motility receptor-like protein) (Myosin heavy chain-related protein) 98502 At5g52280 (Hyaluronan mediated motility receptor-like protein) (Myosin heavy chain-related protein) chloroplast [GO:0009507] locus:2145141; AT5G52280 NA NA NA NA NA NA NA NA ENOG411DVIS ZEU1 Q0WW55,F4KJ62 ZEUS1_ARATH,F4KJ62_ARATH Thymidylate kinase (AtTMPK) (EC 2.7.4.9) (Protein ZEUS1),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: Embryonic lethality when homozygous, due to arrest of the embryo sac development soon after fertilization. {ECO:0000269|PubMed:18036198}. Embryo defective; Preglobular-M. Devic-2008 FUNCTION: Catalyzes the conversion of dTMP to dTDP (Probable). Involved in the regulation of DNA replication. Is essential to promote the first division of the zygote (PubMed:18036198). {ECO:0000269|PubMed:18036198, ECO:0000305}. PATHWAY: Pyrimidine metabolism; dTTP biosynthesis. {ECO:0000305}. ARA:AT5G59440-MONOMER;MetaCyc:AT5G59440-MONOMER; R-ATH-499943; 2.7.4.9 29550,30378 Thymidylate kinase (AtTMPK) (EC 2.7.4.9) (Protein ZEUS1),P-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleoplasm [GO:0005654]; ATP binding [GO:0005524]; thymidylate kinase activity [GO:0004798]; dTDP biosynthetic process [GO:0006233]; dTTP biosynthetic process [GO:0006235]; embryo development ending in seed dormancy [GO:0009793],cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleoplasm [GO:0005654]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; thymidylate kinase activity [GO:0004798]; uridylate kinase activity [GO:0009041]; dTDP biosynthetic process [GO:0006233]; dTTP biosynthetic process [GO:0006235]; dUDP biosynthetic process [GO:0006227] TISSUE SPECIFICITY: Expressed in root, rosette leaves, flower buds, flowers and siliques. {ECO:0000269|PubMed:18036198}. locus:2148283; AT5G59440 thymidylate kinase Os07g0639900 protein (cDNA, clone: J080311G07, full insert sequence) A3BMN8 A3BMN8_ORYSJ Os07g0639900 OsJ_25303 OSNPB_070639900 ENOG411DVIR MAKR2 Q9SH58 MAKR2_ARATH Probable membrane-associated kinase regulator 2 44511 Probable membrane-associated kinase regulator 2 plasma membrane [GO:0005886] locus:2024573; AT1G64080 membrane-associated kinase regulator 2-like Os01g0226200 protein A0A0P0V0Q5 A0A0P0V0Q5_ORYSJ Os01g0226200 OSNPB_010226200 ENOG411DVIX MTH12.2 Q8GW27 Q8GW27_ARATH Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.134) FUNCTION: Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. {ECO:0000256|RuleBase:RU363109}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. {ECO:0000256|RuleBase:RU363109}. 4.2.1.134 25599 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.134) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; 3-hydroxy-arachidoyl-CoA dehydratase activity [GO:0102343]; 3-hydroxy-behenoyl-CoA dehydratase activity [GO:0102344]; 3-hydroxy-lignoceroyl-CoA dehydratase activity [GO:0102345]; fatty acid biosynthetic process [GO:0006633] locus:2174319; AT5G59770 Protein tyrosine phosphatase-like protein PTPLA Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.134) Q0DHK0,A0A0P0WNG5 Q0DHK0_ORYSJ,A0A0P0WNG5_ORYSJ Os05g0460800 Os05g0460800 OsJ_18818 OSNPB_050460800,Os05g0460800 OSNPB_050460800 FUNCTION: Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. {ECO:0000256|RuleBase:RU363109}. ENOG411DVIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lycopene beta cyclase NA NA NA NA NA NA NA ENOG411DVIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease T2 family Os07g0630400 protein (Putative aleurone ribonuclease) (cDNA clone:001-007-F07, full insert sequence) (cDNA clone:006-302-H11, full insert sequence),Os07g0629900 protein (Fragment),Os07g0629300 protein (Fragment) Q8H4E4,A0A0P0X972,A0A0N7KNW6 Q8H4E4_ORYSJ,A0A0P0X972_ORYSJ,A0A0N7KNW6_ORYSJ P0011H09.133 Os07g0630400 OsJ_25228 OSNPB_070630400,Os07g0629900 OSNPB_070629900,Os07g0629300 OSNPB_070629300 ENOG411DVIC Q8LA64,Q9LN65,Q9C9Q1,A0A1P8ASF0,F4HP43,A8MR31 Q8LA64_ARATH,Q9LN65_ARATH,Q9C9Q1_ARATH,A0A1P8ASF0_ARATH,F4HP43_ARATH,A8MR31_ARATH At1g19330 (Histone deacetylase complex subunit) (Uncharacterized protein At1g19330),F18O14.5 (Histone deacetylase complex subunit),Histone deacetylase complex subunit (Uncharacterized protein F9E10.9),Histone deacetylase complex subunit 27463,26949,27058,21920,27591,26930 At1g19330 (Histone deacetylase complex subunit) (Uncharacterized protein At1g19330),F18O14.5 (Histone deacetylase complex subunit),Histone deacetylase complex subunit (Uncharacterized protein F9E10.9),Histone deacetylase complex subunit histone deacetylase complex [GO:0000118]; histone deacetylase activity [GO:0004407]; transcription cofactor activity [GO:0003712]; regulation of transcription, DNA-templated [GO:0006355] locus:2037286;,locus:2016452; AT1G19330,AT1G75060 expressed protein Expressed protein (Os10g0358600 protein) (cDNA clone:J023001K18, full insert sequence),Os04g0166600 protein (cDNA clone:J033092L14, full insert sequence),Os02g0823200 protein Q339G1,Q0JF35,A0A0N7KGC8 Q339G1_ORYSJ,Q0JF35_ORYSJ,A0A0N7KGC8_ORYSJ Os10g0358600 LOC_Os10g21460 OSNPB_100358600,Os04g0166600 Os04g0166600 OSNPB_040166600,Os02g0823200 OSNPB_020823200 ENOG411DVIB SPHK1,SPHK2 Q8L7L1,F2Y4A3,F4JJK1 SPHK1_ARATH,SPHK2_ARATH,F4JJK1_ARATH Sphingosine kinase 1 (EC 2.7.1.91),Sphingosine kinase 2 (EC 2.7.1.91),Sphingosine kinase 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but seeds have increased germination speed after imbibition, without affecting overall germination rate. {ECO:0000269|PubMed:18557834, ECO:0000269|PubMed:22275366}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22275366}. stomata are more sensitive to ABA. Seed germination was delayed compared to the wild type. Increased germination rate and abnormal stomatal regulation in response to ABA-A. Hetherington-2008 FUNCTION: Involved in the production of sphingolipid metabolites. Phosphorylates sphingosine and various sphingoid long-chain base (LCB) products, such as phytosphingosine (PHS, 4-hydroxysphinganine), 4-hydroxy-8-sphingenine, 4,8-sphingadienine, D-erythro-dihydrosphingosine and D,L-threo-dihydrosphingosine. Is required for abscisic acid (ABA) signaling that mediates stomatal closure, inhibition of seed germination and root elongation. May function upstream of PLDALPHA1 and phosphatidic acid (PA) in an amplification response to ABA that mediates stomatal closure. {ECO:0000269|PubMed:18557834, ECO:0000269|PubMed:21330371, ECO:0000269|PubMed:22275366}.,FUNCTION: Involved in the production of sphingolipid metabolites. Phosphorylates sphingosine and various l sphingoid long-chain base (LCB) products, such as phytosphingosine (PHS, 4-hydroxysphinganine), 4-hydroxy-8-sphingenine, 4,8-sphingadienine and D-erythro-dihydrosphingosine, but has a very few activity toward D,L-threo- dihydrosphingosine. Is required for abscisic acid (ABA) signaling that mediates stomatal closure, inhibition of seed germination and root elongation. May function upstream of PLDALPHA1 and phosphatidic acid (PA) in an amplification response to ABA that mediates stomatal closure. {ECO:0000269|PubMed:21330371, ECO:0000269|PubMed:22275366}. ARA:AT4G21540-MONOMER;MetaCyc:AT4G21540-MONOMER; R-ATH-1660661;R-ATH-390471; 2.7.1.91 53699,53890,30223 Sphingosine kinase 1 (EC 2.7.1.91),Sphingosine kinase 2 (EC 2.7.1.91),Sphingosine kinase 1 plant-type vacuole membrane [GO:0009705]; vacuole [GO:0005773]; ATP binding [GO:0005524]; D-erythro-sphingosine kinase activity [GO:0017050]; NAD+ kinase activity [GO:0003951]; sphinganine kinase activity [GO:0008481]; cellular response to abscisic acid stimulus [GO:0071215]; response to abscisic acid [GO:0009737]; seed germination [GO:0009845]; sphingolipid metabolic process [GO:0006665],plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; D-erythro-sphingosine kinase activity [GO:0017050]; NAD+ kinase activity [GO:0003951]; phosphatidic acid binding [GO:0070300]; sphinganine kinase activity [GO:0008481]; cellular response to abscisic acid stimulus [GO:0071215]; response to abscisic acid [GO:0009737]; sphingolipid metabolic process [GO:0006665],kinase activity [GO:0016301] TISSUE SPECIFICITY: Hihgly expressed in stems and flowers and at lower levels in roots, leaves and siliques. {ECO:0000269|PubMed:21330371}.,TISSUE SPECIFICITY: Hihgly expressed in flowers and siliques and at lower levels in roots, leaves and stems. {ECO:0000269|PubMed:21330371}. locus:2119642;,locus:6530298214; AT4G21540,AT4G21534 sphingosine kinase Os01g0782200 protein (cDNA clone:002-121-E02, full insert sequence) (cDNA clone:J013108A22, full insert sequence),Os01g0782200 protein,Os07g0563000 protein (Fragment) Q0JIR8,A0A0P0V8X5,A0A0P0X7J9 Q0JIR8_ORYSJ,A0A0P0V8X5_ORYSJ,A0A0P0X7J9_ORYSJ Os01g0782200 Os01g0782200 OSNPB_010782200,Os01g0782200 OSNPB_010782200,Os07g0563000 OSNPB_070563000 ENOG411DVII FLN2 F4I0K2 SCKL2_ARATH Fructokinase-like 2, chloroplastic (pfkB-type carbohydrate kinase family protein 1) DISRUPTION PHENOTYPE: Plants display chlorosis prior to leaf expansion, but exhibit slow greening, remain autotrophic, can grow to maturity, and set viable seed (PubMed:22770232). Albino phenotype of seedlings grown on sucrose-free medium associated with reduced plastid-encoded RNA polymerase (PEP)-dependent gene expression and altered chloroplast development. Delayed greening of seedlings grown on sucrose-containing medium (PubMed:24019900). {ECO:0000269|PubMed:22770232, ECO:0000269|PubMed:24019900}. FUNCTION: Required for proper chloroplast development, most likely through regulating plastid-encoded polymerase (PEP) dependent chloroplast transcription. Acts as a component of the transcriptionally active plastid chromosome that is required for plastid gene expression. {ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20511297, ECO:0000269|PubMed:22770232, ECO:0000269|PubMed:24019900}. MISCELLANEOUS: RNAi plants display abnormal plastids lacking internal membrane structures. {ECO:0000269|PubMed:20511297}. 68980 Fructokinase-like 2, chloroplastic (pfkB-type carbohydrate kinase family protein 1) chloroplast nucleoid [GO:0042644]; nucleoid [GO:0009295]; kinase activity [GO:0016301]; chloroplast organization [GO:0009658]; etioplast organization [GO:0009662]; transcription from plastid promoter [GO:0042793] locus:2026465; AT1G69200 pfkB family carbohydrate kinase Os03g0602600 protein (Putative kinase) Q6AVL0 Q6AVL0_ORYSJ OJ1519_A12.11 Os03g0602600 OSNPB_030602600 ENOG411DVIH CCX1,CAX7 Q9FKP1,A0A1P8BHB5 CCX1_ARATH,A0A1P8BHB5_ARATH Cation/calcium exchanger 1 (AtCCX1) (Protein CATION EXCHANGER 7),Calcium exchanger 7 FUNCTION: Vacuolar membrane-localized H(+)-dependent K(+) and Na(+) transporter. {ECO:0000269|Ref.5, ECO:0000269|Ref.6}. R-ATH-425561;R-ATH-8949215; 61864,57682 Cation/calcium exchanger 1 (AtCCX1) (Protein CATION EXCHANGER 7),Calcium exchanger 7 integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; antiporter activity [GO:0015297]; potassium ion transport [GO:0006813]; sodium ion transport [GO:0006814],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|Ref.6}. locus:2175906; AT5G17860 calcium exchanger K-exchanger, putative, expressed (Os03g0656500 protein) (Putative sodium/calcium exchanger protein) Q7Y0B2 Q7Y0B2_ORYSJ OSJNBa0075A22.24 LOC_Os03g45370 Os03g0656500 OsJ_11961 OSNPB_030656500 ENOG411DVIK P57758 CTNS_ARATH Cystinosin homolog FUNCTION: Thought to transport cystine out of lysosomes. {ECO:0000250}. R-ATH-425393;R-ATH-5223345; 31027 Cystinosin homolog integral component of membrane [GO:0016021]; lysosomal membrane [GO:0005765]; vacuolar membrane [GO:0005774]; L-cystine transmembrane transporter activity [GO:0015184]; L-cystine transport [GO:0015811] locus:2168843; AT5G40670 Cystinosin Lysosomal Cystine Transporter family protein, expressed (Os12g0278700 protein),Lysosomal Cystine Transporter family protein, expressed (Os12g0278700 protein) (cDNA clone:J013134P03, full insert sequence) Q2QTY5,Q2QTY6 Q2QTY5_ORYSJ,Q2QTY6_ORYSJ Os12g0278700 LOC_Os12g18110 Os12g0278700 OsJ_35759 OSNPB_120278700,Os12g0278700 LOC_Os12g18110 OSNPB_120278700 ENOG411DVIJ NYC1 Q93ZA0,F4JSA6 NYC1_ARATH,F4JSA6_ARATH Probable chlorophyll(ide) b reductase NYC1, chloroplastic (EC 1.1.1.294) (Protein NON-YELLOW COLORING 1) (AtNYC1),NAD(P)-binding Rossmann-fold superfamily protein DISRUPTION PHENOTYPE: Decrease in chlorophyll b during dark incubation substantially suppressed. {ECO:0000269|PubMed:19403948}. nyc1 mutants have elevated levels of chlorophyll b following dark-induced senescence relative to wild type plants indicating a defect in chlorophyll b degradation. Lhcb proteins associated with LHCII also persist for longer in these mutants than in wild type plants during a prolonged dark incubation. FUNCTION: Involved in chlorophyll b degradation. Belongs to the chlorophyll catabolic enzymes (CCEs). {ECO:0000269|PubMed:19403948}. ARA:AT4G13250-MONOMER;MetaCyc:AT4G13250-MONOMER; 1.1.1.294 54845,54657 Probable chlorophyll(ide) b reductase NYC1, chloroplastic (EC 1.1.1.294) (Protein NON-YELLOW COLORING 1) (AtNYC1),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; chlorophyll(ide) b reductase activity [GO:0034256]; chlorophyll catabolic process [GO:0015996]; PSII associated light-harvesting complex II catabolic process [GO:0010304],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Up-regulated during senescence. {ECO:0000269|PubMed:23200839}. locus:2119330; AT4G13250 chlorophyll(ide) b reductase Probable chlorophyll(ide) b reductase NYC1, chloroplastic (EC 1.1.1.294) (Protein NON-YELLOW COLORING 1) (OsNYC1),Os01g0227100 protein (Fragment) Q5N800,A0A0N7KCL2 NYC1_ORYSJ,A0A0N7KCL2_ORYSJ NYC1 Os01g0227100 LOC_Os01g12710 OsJ_00960 P0443E07.35 P0452F10.6,Os01g0227100 OSNPB_010227100 DISRUPTION PHENOTYPE: Stay-green phenotype during senescence. Grana stacks fused into large stable stacks during semescence. {ECO:0000269|PubMed:17416733}. FUNCTION: Required for proper chloroplast degradation. Involved in chlorophyll b degradation. MISCELLANEOUS: No chlorophyll b reductase activity detected in vitro with a recombinant protein produced in a heterologous system. ENOG411DVI5 Q9SAJ8,Q9SA31 Q9SAJ8_ARATH,Q9SA31_ARATH T8K14.7 protein (Uncharacterized protein At1g79510),At1g16320/F3O9_12 (F3O9.12 protein) (Plant/protein (DUF2358)) 31449,31405 T8K14.7 protein (Uncharacterized protein At1g79510),At1g16320/F3O9_12 (F3O9.12 protein) (Plant/protein (DUF2358)) locus:2206445;,locus:2032850; AT1G79510,AT1G16320 Uncharacterized conserved protein (DUF2358) OSJNBa0070C17.17 protein (Os04g0613300 protein) Q7XLD2 Q7XLD2_ORYSJ Os04g0613300 OSJNBa0070C17.17 OSNPB_040613300 ENOG411DVI4 BHLH41,MHM17.7 Q9LTS4,A0A1P8BAL1 BH041_ARATH,A0A1P8BAL1_ARATH Putative transcription factor bHLH041 (Basic helix-loop-helix protein 41) (AtbHLH41) (bHLH 41) (Transcription factor EN 51) (bHLH transcription factor bHLH041),Basic helix-loop-helix (BHLH) DNA-binding family protein 52745,59566 Putative transcription factor bHLH041 (Basic helix-loop-helix protein 41) (AtbHLH41) (bHLH 41) (Transcription factor EN 51) (bHLH transcription factor bHLH041),Basic helix-loop-helix (BHLH) DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2164605; AT5G56960 Helix-loop-helix DNA-binding domain Basic helix-loop-helix (BHLH) family protein-like (Os01g0575200 protein) (cDNA clone:002-101-F10, full insert sequence) Q8S0C6 Q8S0C6_ORYSJ Os01g0575200 B1112D09.6 OsJ_02312 OSNPB_010575200 ENOG411DVI7 CKL6,CKL10,CKL11,CKI1,ckl10 Q8LPJ1,Q9LW62,Q39050,A0A1P8B545,A0A1I9LQM5 CKL6_ARATH,CKL10_ARATH,CKL11_ARATH,A0A1P8B545_ARATH,A0A1I9LQM5_ARATH Casein kinase 1-like protein 6 (EC 2.7.11.1) (Plasmodesmal-associated protein kinase 1) (Protein CASEIN KINASE I-LIKE 6),Casein kinase 1-like protein 10 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 10),Casein kinase 1-like protein 11 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 11),Casein kinase I,Casein kinase I-like 10 DISRUPTION PHENOTYPE: Abnormal cortical microtubule organization leading to anisotropic cell expansion. {ECO:0000269|PubMed:18945931}. FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins (By similarity). Phosphorylates tubulins and microtubules in vitro (PubMed:18945931). Involved in anisotropic cell growth and cell shape formation via the regulation of microtubule organization (PubMed:18945931, PubMed:19820321). {ECO:0000250|UniProtKB:P48730, ECO:0000269|PubMed:18945931, ECO:0000269|PubMed:19820321}.,FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins. {ECO:0000250|UniProtKB:P48730}.,FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Can phosphorylate casein, phosvitin, myosin light chains and poly(Glu,Tyr) in vitro. {ECO:0000269|PubMed:7480353}. 2.7.11.1 54025,50381,51953,42213,48915 Casein kinase 1-like protein 6 (EC 2.7.11.1) (Plasmodesmal-associated protein kinase 1) (Protein CASEIN KINASE I-LIKE 6),Casein kinase 1-like protein 10 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 10),Casein kinase 1-like protein 11 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 11),Casein kinase I,Casein kinase I-like 10 cell junction [GO:0030054]; cell periphery [GO:0071944]; cortical microtubule [GO:0055028]; cytoskeleton [GO:0005856]; endomembrane system [GO:0012505]; membrane [GO:0016020]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; tubulin binding [GO:0015631]; cortical microtubule organization [GO:0043622]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of cell growth [GO:0001558]; regulation of cell shape [GO:0008360]; regulation of unidimensional cell growth [GO:0051510],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; phosphorylation [GO:0016310]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2121338;,locus:2090875;,locus:2129640; AT4G28540,AT3G23340,AT4G14340 Casein Kinase Casein kinase I, epsilon isoform, putative, expressed (Os10g0476300 protein) (cDNA clone:J023007I07, full insert sequence),Os02g0810400 protein (Putative casein kinase I),Os10g0476300 protein (Fragment) Q7XDE4,Q6K988,A0A0P0XVQ2 Q7XDE4_ORYSJ,Q6K988_ORYSJ,A0A0P0XVQ2_ORYSJ Os10g0476300 LOC_Os10g33650 Os10g0476300 OSNPB_100476300,Os02g0810400 OJ1116_E04.4 OsJ_08817 OSNPB_020810400,Os10g0476300 OSNPB_100476300 ENOG411DVI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DOMON domain Os05g0556400 protein (cDNA clone:001-020-D11, full insert sequence) Q6I612 Q6I612_ORYSJ Os05g0556400 Os05g0556400 OJ1214_E03.7 OSNPB_050556400 ENOG411DVI1 F3F19.22 Q9SAF3,B3H455 Q9SAF3_ARATH,B3H455_ARATH At1g13195 (F3F19.22 protein) (RING/U-box superfamily protein) (Uncharacterized protein At1g13195),RING/U-box superfamily protein 29748,25675 At1g13195 (F3F19.22 protein) (RING/U-box superfamily protein) (Uncharacterized protein At1g13195),RING/U-box superfamily protein locus:505006120; AT1G13195 zinc finger Os01g0905700 protein (Putative MTD2) (cDNA clone:001-208-D10, full insert sequence) (cDNA clone:006-212-H10, full insert sequence) (cDNA clone:006-302-G11, full insert sequence) (cDNA clone:J023105K15, full insert sequence),Os07g0275300 protein Q5N6U7,Q0D796 Q5N6U7_ORYSJ,Q0D796_ORYSJ Os01g0905700 OsJ_04463 OSJNOa108M02.10 OSNPB_010905700,Os07g0275300 Os07g0275300 OsJ_23829 OSNPB_070275300 ENOG411DVI0 ELF6,REF6 Q6BDA0,Q9STM3,A0A1I9LPP9 ELF6_ARATH,REF6_ARATH,A0A1I9LPP9_ARATH Probable lysine-specific demethylase ELF6 (EC 1.14.11.-) (Early flowering 6) (Jumonji domain-containing protein 11) (Probable lysine-specific histone demethylase ELF6),Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6),Relative of early flowering 6 DISRUPTION PHENOTYPE: Early flowering, but normal development of all organs. Partially redundant with JMJ14. Brassinosteroid-insensitive phenotype. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490}.,DISRUPTION PHENOTYPE: Late-flowering in both long and short days (PubMed:15377760). Brassinosteroid-insensitive phenotype (PubMed:18467490). {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490}. elf6-3 mutant seedlings do not have any obvious aberrant phenotypes under light-grown conditions but they do have an early flowering phenotype. Adult plants have reduced cell elongation manifested in a ~30% reduction in leaf petiole length but their leaf width is similar to wild-type. The transcript levels of some BR-regulated genes are moderately reduced in elf6-3 mutants. H3K9me3 levels are elevated immediately upstream of the BR-responsive TCH4 gene in elf6-3 mutants.,elf6-3 mutants flower earlier than wild type plants under long- and short-day conditions.,elf6-1 mutants flower earlier than wild-type plants under long- and short-day conditions.,elf6-4 mutants flower earlier than wild type plants under long- and short-day conditions,ref6-1 mutant seedlings do not have any obvious aberrant phenotypes under light-grown conditions but they do have a late flowering phenotype. Adult plants have reduced cell elongation manifested in a ~30% reduction in leaf petiole length as well as shorter leaf blades but their leaf width is similar to wild-type. The transcript levels of some BR-regulated genes are reduced in ref6-1 mutants. H3K9me3 levels are elevated immediately upstream of the BR-responsive TCH4 gene in ref6-1 mutants.,ref6-1 mutants flower later than wild-type plants under long- and short-day conditions even though they have the same leaf initiation rate as wild-type plants. FLC mRNA levels are increased in ref6-1 mutants.,ref6-2 mutants flower later than wild-type plants.,ref6-3 mutants flower later than wild-type plants under long- and short-day conditions. Levels of H4 histone acetylation in the the promoter and in the first intron of FLC are reduced in ref6-3 mutants compared to wild-type plants. Early flowering-Y. Noh-2004,Short petioles and leaf blades; Late flowering-Y. Yin-2008 FUNCTION: Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.,FUNCTION: Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3. Demethylates both tri- (H3K27me3) and di-methylated (H3K27me2) H3K27me (PubMed:21642989, PubMed:27111035). Demethylates also H3K4me3/2 and H3K36me3/2 in an in vitro assay (PubMed:20711170). Involved in the transcriptional regulation of hundreds of genes regulating developmental patterning and responses to various stimuli (PubMed:18467490). Binds DNA via its four zinc fingers in a sequence-specific manner, 5'-CTCTGYTY-3', to promote the demethylation of H3K27me3 and the regulation of organ boundary formation (PubMed:27111034, PubMed:27111035). Involved in the regulation of flowering time by repressing FLOWERING LOCUS C (FLC) expression (PubMed:15377760). Interacts with the NF-Y complexe to regulate SOC1 (PubMed:25105952). Mediates the recruitment of BRM to its target loci (PubMed:27111034). {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:20711170, ECO:0000269|PubMed:21642989, ECO:0000269|PubMed:25105952, ECO:0000269|PubMed:27111034, ECO:0000269|PubMed:27111035}. R-ATH-3214842;R-ATH-5693565; 1.14.11.- 150072,152629,112655 Probable lysine-specific demethylase ELF6 (EC 1.14.11.-) (Early flowering 6) (Jumonji domain-containing protein 11) (Probable lysine-specific histone demethylase ELF6),Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6),Relative of early flowering 6 nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; histone H3-K9 demethylation [GO:0033169]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; negative regulation of short-day photoperiodism, flowering [GO:0048577]; regulation of transcription, DNA-templated [GO:0006355]; response to brassinosteroid [GO:0009741]; transcription, DNA-templated [GO:0006351]; unidimensional cell growth [GO:0009826],nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; histone H3-K9 demethylation [GO:0033169]; leaf development [GO:0048366]; negative regulation of histone acetylation [GO:0035067]; regulation of transcription, DNA-templated [GO:0006355]; response to brassinosteroid [GO:0009741]; transcription, DNA-templated [GO:0006351]; unidimensional cell growth [GO:0009826]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}.,TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem and primary and secondary root tips, and lower expression in cotyledons, leaves and root axis along vascular tissues. Detected in inflorescences, stems and siliques. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}. locus:2146653;,locus:504955644; AT5G04240,AT3G48430 - C2H2 zinc finger protein expressed Lysine-specific demethylase JMJ705 (EC 1.14.11.-) (Jumonji domain-containing protein 705) (Lysine-specific histone demethylase JMJ705) (Protein JUMONJI 705),Lysine-specific demethylase SE14 (EC 1.14.11.-) (Protein PHOTOPERIOD SENSITIVITY 14),JmjC domain containing protein, expressed (Os12g0279100 protein),JmjC domain containing protein, expressed (Os03g0151300 protein) Q5N712,Q10RP4,Q2QTX9,Q10RP5 JM705_ORYSJ,SE14_ORYSJ,Q2QTX9_ORYSJ,Q10RP5_ORYSJ JMJ705 Os01g0907400 LOC_Os01g67970 B1417F08.20 OsJ_04472 P0497A05.7,SE14 Os03g0151300 LOC_Os03g05690,Os12g0279100 LOC_Os12g18150 Os12g0279100 OSNPB_120279100,Os03g0151300 LOC_Os03g05680 OSNPB_030151300 DISRUPTION PHENOTYPE: Reduced plant height, panicle length, spikelets per panicle and spikelet fertility. Increased susceptibility to the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.,DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:24759811}. FUNCTION: Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.,FUNCTION: Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. MISCELLANEOUS: Plants over-expressing JMJ705 display a leaf lesion-mimic phenotype in mature leaves, have high levels of biotic stress-responsive and defense-related genes leading to enhanced plant resistance to the bacterial pathogen Xanthomonas oryzae pv. oryzae. ENOG411DVI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os02g0794000 protein (cDNA clone:J033048C06, full insert sequence) Q6K677 Q6K677_ORYSJ Os02g0794000 Os02g0794000 OJ1249_F12.38 OSNPB_020794000 P0700F06.26 ENOG411DVI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Os11g0121000 protein,Expressed protein (Os12g0120500 protein) (cDNA clone:J033127K18, full insert sequence) B9G937,Q2QYG5 B9G937_ORYSJ,Q2QYG5_ORYSJ Os11g0121000 OsJ_32752 OSNPB_110121000,LOC_Os12g02760 Os12g0120500 OSNPB_120120500 ENOG411DVI9 PCMP-E17,MEF32 Q5XEY7,A0A1P8B6L5 PP309_ARATH,A0A1P8B6L5_ARATH Pentatricopeptide repeat-containing protein At4g14170,Pentatricopeptide repeat (PPR) superfamily protein 53253,42135 Pentatricopeptide repeat-containing protein At4g14170,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2129465; AT4G14170 Pentatricopeptide repeat-containing protein Os05g0409800 protein A0A0P0WM96 A0A0P0WM96_ORYSJ Os05g0409800 OSNPB_050409800 ENOG411DVI8 BHLH96,BHLH94,bHLH096,bHLH094 Q9C7T4,Q9SK91,A0A1P8ANA4,A0A1P8ANU6 BH096_ARATH,BH094_ARATH,A0A1P8ANA4_ARATH,A0A1P8ANU6_ARATH Transcription factor bHLH96 (Basic helix-loop-helix protein 96) (AtbHLH96) (bHLH 96) (Transcription factor EN 15) (bHLH transcription factor bHLH096),Transcription factor bHLH94 (Basic helix-loop-helix protein 94) (AtbHLH94) (bHLH 94) (Transcription factor EN 16) (bHLH transcription factor bHLH094),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 35972,34893,35065,37626 Transcription factor bHLH96 (Basic helix-loop-helix protein 96) (AtbHLH96) (bHLH 96) (Transcription factor EN 15) (bHLH transcription factor bHLH096),Transcription factor bHLH94 (Basic helix-loop-helix protein 94) (AtbHLH94) (bHLH 94) (Transcription factor EN 16) (bHLH transcription factor bHLH094),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2207061;,locus:2009537; AT1G72210,AT1G22490 Transcription factor BHLH transcription factor (Helix-loop-helix DNA-binding domain containing protein, expressed) (Os03g0188400 protein) (cDNA clone:002-130-B03, full insert sequence) Q8H7N8 Q8H7N8_ORYSJ OJ1217B09.8 LOC_Os03g08930 Os03g0188400 OSNPB_030188400 ENOG411EK3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EIF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family S41 NA NA NA NA NA NA NA ENOG411EG3V F4K6L4 F4K6L4_ARATH RING/U-box superfamily protein 27489 RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:1006230652; AT5G07225 Inherit from KOG: finger protein NA NA NA NA NA NA NA ENOG411EG3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early nodulin 75-like protein (Os07g0599500 protein) (cDNA clone:001-206-B01, full insert sequence),Os07g0599700 protein (Proline-rich protein family-like protein) (cDNA clone:J013040D08, full insert sequence),Os07g0599300 protein (Proline-rich protein family-like protein) (cDNA clone:002-129-D01, full insert sequence) Q8H5A4,Q8H5A1,Q7XAM1 Q8H5A4_ORYSJ,Q8H5A1_ORYSJ,Q7XAM1_ORYSJ OJ1634_B10.112 Os07g0599500 OsJ_25003 OSNPB_070599500,OJ1634_B10.115 Os07g0599700 OsJ_25005 OSNPB_070599700,OJ1634_B10.111 Os07g0599300 OSNPB_070599300 ENOG411EG3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EG3M Q9LEU5 Q9LEU5_ARATH Tudor/PWWP/MBT superfamily protein (Uncharacterized protein At5g10950) (Uncharacterized protein T30N20_220) 43620 Tudor/PWWP/MBT superfamily protein (Uncharacterized protein At5g10950) (Uncharacterized protein T30N20_220) cytosol [GO:0005829] locus:2183750; AT5G10950 Inherit from KOG: PDS5 regulator of cohesion maintenance homolog NA NA NA NA NA NA NA ENOG411EG32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAF1 Q9SAG4,A0A1P8AVU7,A0A1P8AVZ7,F4HVT7 FB93_ARATH,A0A1P8AVU7_ARATH,A0A1P8AVZ7_ARATH,F4HVT7_ARATH F-box protein At1g80960,F-box and Leucine Rich Repeat domains containing protein 55690,45141,51376,53087 F-box protein At1g80960,F-box and Leucine Rich Repeat domains containing protein locus:2025812; AT1G80960 NA NA NA NA NA NA NA NA ENOG411EI8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA3J Q1PE83 Q1PE83_ARATH ARM repeat superfamily protein 88850 ARM repeat superfamily protein integral component of membrane [GO:0016021] locus:2129580; AT4G14280 NA NA NA NA NA NA NA NA ENOG411EA3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vesicle transport v-SNARE protein N-terminus Os01g0707300 protein (cDNA clone:J023135J09, full insert sequence),Os01g0707300 protein (Vesicle transport v-SNARE (Vesicle soluble NSF attachment protein receptor) protein-like) (cDNA clone:006-211-F05, full insert sequence) (cDNA clone:006-301-C03, full insert sequence) B7EL80,Q8S0N4 B7EL80_ORYSJ,Q8S0N4_ORYSJ Os01g0707300 OSNPB_010707300,P0692C11.36-1 P0510F09.14-1 Os01g0707300 OsJ_03196 OSNPB_010707300 ENOG411EA3H Q9LMX6 Q9LMX6_ARATH At1g13730 (At1g13730/F21F23_12) (Expressed protein) (F21F23.16 protein) (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) 46803 At1g13730 (At1g13730/F21F23_12) (Expressed protein) (F21F23.16 protein) (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; transport [GO:0006810] locus:2023854; AT1G13730 nuclear transport factor 2 NA NA NA NA NA NA NA ENOG411EA3N ENDO4,ENDO5 F4JJL0,F4JJL3,A0A1P8B3N0,A0A1P8B3M9,A0A1P8B3Q3 ENDO4_ARATH,ENDO5_ARATH,A0A1P8B3N0_ARATH,A0A1P8B3M9_ARATH,A0A1P8B3Q3_ARATH Endonuclease 4 (AtENDO4) (EC 3.1.30.1) (Deoxyribonuclease ENDO4) (Single-stranded-nucleate endonuclease ENDO4),Endonuclease 5 (AtENDO5) (EC 3.1.30.1) (Deoxyribonuclease ENDO5) (Single-stranded-nucleate endonuclease ENDO5),Endonuclease 4 FUNCTION: Probable endonuclease (By similarity). Cannot hydrolyze single-stranded DNA and does not cleave mismatches. {ECO:0000250, ECO:0000269|PubMed:17651368}.,FUNCTION: Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases. Endonuclease that recognizes and cleaves some mismatches with high efficiency, including heteroduplex double-stranded DNA; mostly efficient on T/G, A/G and G/G mismatches, less efficient for T/T and poorly efficient for C/C, A/A, T/C and A/C. {ECO:0000269|PubMed:17651368}. 3.1.30.1 34204,33610,30129,36985,37656 Endonuclease 4 (AtENDO4) (EC 3.1.30.1) (Deoxyribonuclease ENDO4) (Single-stranded-nucleate endonuclease ENDO4),Endonuclease 5 (AtENDO5) (EC 3.1.30.1) (Deoxyribonuclease ENDO5) (Single-stranded-nucleate endonuclease ENDO5),Endonuclease 4 endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; DNA catabolic process [GO:0006308],metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; single-stranded DNA endodeoxyribonuclease activity [GO:0000014]; T/G mismatch-specific endonuclease activity [GO:0043765]; DNA catabolic process [GO:0006308],endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; DNA catabolic process [GO:0006308] locus:504955531;,locus:2119612; AT4G21585,AT4G21600 S1/P1 Nuclease NA NA NA NA NA NA NA ENOG411EA3M FBX15 Q9S9V1,Q9CAP3,Q9CAE7,Q9C9Y4 FBX15_ARATH,FB89_ARATH,FB138_ARATH,FB136_ARATH Putative F-box only protein 15,Putative F-box protein At1g77650,Putative F-box protein At3g10430,F-box protein At3g08750 44097,44778,43126,43037 Putative F-box only protein 15,Putative F-box protein At1g77650,Putative F-box protein At3g10430,F-box protein At3g08750 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2135079;,locus:2204760;,locus:2075790;,locus:2077903; AT4G04690,AT1G77650,AT3G10430,AT3G08750 F-box family protein (FBX15) NA NA NA NA NA NA NA ENOG411EA3C Q9LJZ8,Q9SZ95,Q9S9T0,Q9LT21,Q4PSN8,Q9FVQ9,O64800,Q9FKJ1,A0A1P8APS3 FB167_ARATH,FB224_ARATH,FBK80_ARATH,FB165_ARATH,FB166_ARATH,FB29_ARATH,FB344_ARATH,FB296_ARATH,A0A1P8APS3_ARATH Putative F-box protein At3g20030,Putative F-box protein At4g09790,F-box/kelch-repeat protein At4g05080,F-box protein At3g19880,F-box protein At3g19890,Putative F-box protein At1g32140,Probable F-box protein At1g67455,Putative F-box protein At5g60560,F-box and associated interaction domains-containing protein 47025,40879,45839,45076,47896,68648,38880,46911,24102 Putative F-box protein At3g20030,Putative F-box protein At4g09790,F-box/kelch-repeat protein At4g05080,F-box protein At3g19880,F-box protein At3g19890,Putative F-box protein At1g32140,Probable F-box protein At1g67455,Putative F-box protein At5g60560,F-box and associated interaction domains-containing protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2087575;,locus:2138421;,locus:2092236;,locus:2092246;,locus:2031770;,locus:504956161; AT3G20030,AT4G09790,AT4G05080,AT3G19880,AT3G19890,AT1G32140,AT1G67455,AT5G60560 F-box associated NA NA NA NA NA NA NA ENOG411EA3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EA3G Q147R7 Q147R7_ARATH At5g44820 (Glycosyltransferase) (Nucleotide-diphospho-sugar transferase family protein) 42224 At5g44820 (Glycosyltransferase) (Nucleotide-diphospho-sugar transferase family protein) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; transferase activity [GO:0016740]; RNA modification [GO:0009451] locus:2156304; AT5G44820 Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EA3F CYCB1-1 P30183 CCB11_ARATH Cyclin-B1-1 (Cyc1-At) (G2/mitotic-specific cyclin-B1-1) (CycB1;1) R-ATH-176408;R-ATH-2299718;R-ATH-2500257;R-ATH-4419969;R-ATH-6804114;R-ATH-69273;R-ATH-69478;R-ATH-75035; 48460 Cyclin-B1-1 (Cyc1-At) (G2/mitotic-specific cyclin-B1-1) (CycB1;1) nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cell growth [GO:0001558]; response to gamma radiation [GO:0010332] DEVELOPMENTAL STAGE: Expressed early in the G2 phase, reaches a peak at mitosis and then decreases. Expressed in the developing embryo up to the late-heart and early-torpedo stages. {ECO:0000269|PubMed:1373494, ECO:0000269|PubMed:15970679, ECO:0000269|PubMed:7866022}. TISSUE SPECIFICITY: Expressed in root tip, lateral root apex, shoot apex, leaf primordia, axillary buds, stamen and petal primordia, ovules and developing embryo. {ECO:0000269|PubMed:1373494, ECO:0000269|PubMed:7866022}. locus:2126377; AT4G37490 Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411EA3E Q5XV09,F4K371,A0A1R7T3E4 Q5XV09_ARATH,F4K371_ARATH,A0A1R7T3E4_ARATH Ubiquitin-associated (UBA)/TS-N domain protein 37455,32576,26971 Ubiquitin-associated (UBA)/TS-N domain protein locus:2156489; AT5G48690 PUB domain NA NA NA NA NA NA NA ENOG411EA3D BPS3 F4JI15 F4JI15_ARATH BPS1-like protein 39827 BPS1-like protein embryo development ending in seed dormancy [GO:0009793] locus:2124923; AT4G01360 NA NA NA NA NA NA NA NA ENOG411EA3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin C-terminal domain Os02g0167300 protein (Fragment) A0A0P0VF92 A0A0P0VF92_ORYSJ Os02g0167300 OSNPB_020167300 ENOG411EA3X GRH1 Q9ZR12 GRH1_ARATH GRR1-like protein 1 (Protein AUXIN SIGNALING F-BOX 1) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin. Confers sensitivity to the virulent bacterial pathogen P.syringae. Mediates glucose repression in yeast. {ECO:0000269|PubMed:12008900, ECO:0000269|PubMed:15917797, ECO:0000269|PubMed:15992545, ECO:0000269|PubMed:16627744}. PATHWAY: Protein modification; protein ubiquitination. 65648 GRR1-like protein 1 (Protein AUXIN SIGNALING F-BOX 1) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; auxin binding [GO:0010011]; inositol hexakisphosphate binding [GO:0000822]; ubiquitin-protein transferase activity [GO:0004842]; auxin-activated signaling pathway [GO:0009734]; defense response [GO:0006952]; negative regulation of transcription by glucose [GO:0045014]; pollen maturation [GO:0010152]; response to auxin [GO:0009733] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15992545}. locus:2125527; AT4G03190 grr1-like protein 1 NA NA NA NA NA NA NA ENOG411EA3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0136900 protein A0A0N7KRE8 A0A0N7KRE8_ORYSJ Os10g0136900 OSNPB_100136900 ENOG411EA3R TET5 Q84WF6 TET5_ARATH Tetraspanin-5 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 31868 Tetraspanin-5 integral component of membrane [GO:0016021]; organ growth [GO:0035265] locus:2117954; AT4G23410 Tetraspanin family NA NA NA NA NA NA NA ENOG411EA3Q F5F19.1 Q9ZU28 Q9ZU28_ARATH Calmodulin-binding family protein (F5F19.1 protein) (IQ-domain 27) 39330 Calmodulin-binding family protein (F5F19.1 protein) (IQ-domain 27) locus:2034011; AT1G51960 IQ-domain 27 NA NA NA NA NA NA NA ENOG411EA3W Q9FJ27 Q9FJ27_ARATH At5g41870 (Pectin lyase-like superfamily protein) (Polygalacturonase-like protein) ARA:AT5G41870-MONOMER; 48644 At5g41870 (Pectin lyase-like superfamily protein) (Polygalacturonase-like protein) extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2152980; AT5G41870 glycoside hydrolase family 28 protein NA NA NA NA NA NA NA ENOG411EA3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0156800 protein,Os10g0156950 protein,Os08g0361300 protein (Fragment),Os11g0295500 protein,Os03g0614100 protein,Os10g0156600 protein,Os11g0295666 protein,Os11g0295600 protein,Os06g0516700 protein A0A0P0XSW3,A0A0P0XSV3,A0A0P0XET4,A0A0P0Y1M1,A0A0P0W0V2,A0A0P0XS85,A0A0P0Y1W5,A0A0P0Y252,A0A0P0WX33 A0A0P0XSW3_ORYSJ,A0A0P0XSV3_ORYSJ,A0A0P0XET4_ORYSJ,A0A0P0Y1M1_ORYSJ,A0A0P0W0V2_ORYSJ,A0A0P0XS85_ORYSJ,A0A0P0Y1W5_ORYSJ,A0A0P0Y252_ORYSJ,A0A0P0WX33_ORYSJ Os10g0156800 OSNPB_100156800,Os10g0156950 OSNPB_100156950,Os08g0361300 OSNPB_080361300,Os11g0295500 OSNPB_110295500,Os03g0614100 OSNPB_030614100,Os10g0156600 OSNPB_100156600,Os11g0295666 OSNPB_110295666,Os11g0295600 OSNPB_110295600,Os06g0516700 OSNPB_060516700 ENOG411EA3T FAMT,F28D10_60,F28D10_30 Q9FYC4,Q9FYC3,Q9FYC6 FAMT_ARATH,Q9FYC3_ARATH,Q9FYC6_ARATH Farnesoic acid carboxyl-O-methyltransferase (EC 2.1.1.325) (SABATH methyltransferase FAMT),AtPP-like protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),Proteinkinase AtPP-like protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) FUNCTION: May catalyze the production of the insect juvenile hormone methyl farnesoate (MeFA) to trigger defense against insect herbivory. {ECO:0000303|PubMed:16165084}. PATHWAY: Sesquiterpene biosynthesis. {ECO:0000269|PubMed:16165084}. ARA:AT3G44860-MONOMER;MetaCyc:AT3G44860-MONOMER;,ARA:AT3G44870-MONOMER;,ARA:AT3G44840-MONOMER; 2.1.1.325 38515,42180,38930 Farnesoic acid carboxyl-O-methyltransferase (EC 2.1.1.325) (SABATH methyltransferase FAMT),AtPP-like protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),Proteinkinase AtPP-like protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) farnesoic acid O-methyltransferase activity [GO:0019010]; metal ion binding [GO:0046872]; response to herbivore [GO:0080027]; response to jasmonic acid [GO:0009753]; response to molecule of fungal origin [GO:0002238]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168],kinase activity [GO:0016301]; methyltransferase activity [GO:0008168] TISSUE SPECIFICITY: Mostly expressed in leaves and, at very low levels, in roots, stems, flowers and siliques. {ECO:0000269|PubMed:16165084}. locus:2082112;,locus:2082117;,locus:2082157; AT3G44860,AT3G44870,AT3G44840 SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EA39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411EA38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EA33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM NA NA NA NA NA NA NA ENOG411EA32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Interferon-related developmental regulator (IFRD) Interferon-related protein-like (Os02g0219000 protein) (cDNA clone:002-116-E06, full insert sequence),Interferon-related protein-like (Os02g0219100 protein),Interferon-related protein-like (Os08g0491400 protein) (cDNA clone:002-145-D08, full insert sequence),Os02g0219050 protein Q6Z6K8,Q6Z6K6,Q6Z8V2,A0A0P0VGI3 Q6Z6K8_ORYSJ,Q6Z6K6_ORYSJ,Q6Z8V2_ORYSJ,A0A0P0VGI3_ORYSJ Os02g0219000 OSNPB_020219000 P0027A02.17,Os02g0219100 OsJ_05914 OSNPB_020219100 P0027A02.21,Os08g0491400 Os08g0491400 OSNPB_080491400 P0605H02.45 P0686H11.5,Os02g0219050 OSNPB_020219050 ENOG411EA30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif 2 NA NA NA NA NA NA NA ENOG411EA37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N terminus of Rad21 / Rec8 like protein NA NA NA NA NA NA NA ENOG411EA36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Paired amphipathic helix NA NA NA NA NA NA NA ENOG411EA35 NAC086 Q9FFI5 NAC86_ARATH NAC domain-containing protein 86 (NAM-like protein) (No apical meristem-like protein) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with NAC045 (AC A4VCM0). Nac045 and nac086 double mutants exhibit seedling lethality with defective development of the protophloem sieve element. {ECO:0000269|PubMed:25081480}. FUNCTION: Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. 54829 NAC domain-containing protein 86 (NAM-like protein) (No apical meristem-like protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; sieve element differentiation [GO:0090603]; sieve element enucleation [GO:0090602]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}. locus:2167155; AT5G17260 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EA34 WSD1 Q93ZR6,A0A1P8AZ46,A0A1P8AZ90,A0A1P8BF11,A0A1P8BF05,A0A1P8BF14,F4IQ91,F4IU13,F4IU14,B3H5P2 WSD1_ARATH,A0A1P8AZ46_ARATH,A0A1P8AZ90_ARATH,A0A1P8BF11_ARATH,A0A1P8BF05_ARATH,A0A1P8BF14_ARATH,F4IQ91_ARATH,F4IU13_ARATH,F4IU14_ARATH,B3H5P2_ARATH O-acyltransferase WSD1 (Diacylglycerol O-acyltransferase) (DGAT) (EC 2.3.1.20) (Long-chain-alcohol O-fatty-acyltransferase) (EC 2.3.1.75) (Wax synthase) (WS),O-acyltransferase (WSD1-like) family protein,O-acyltransferase WSD1-like protein DISRUPTION PHENOTYPE: Severe reduction in wax alkyl esters. {ECO:0000269|PubMed:18621978}. FUNCTION: Bifunctional wax ester synthase/diacylglycerol acyltransferase. Involved in cuticular wax biosynthesis. {ECO:0000269|PubMed:18621978}. PATHWAY: Glycerolipid metabolism; triacylglycerol biosynthesis. ARA:AT5G37300-MONOMER;,ARA:GQT-1489-MONOMER; 2.3.1.20; 2.3.1.20; 2.3.1.75 54417,44293,47488,46027,56692,39424,24072,33591,55226,24143 O-acyltransferase WSD1 (Diacylglycerol O-acyltransferase) (DGAT) (EC 2.3.1.20) (Long-chain-alcohol O-fatty-acyltransferase) (EC 2.3.1.75) (Wax synthase) (WS),O-acyltransferase (WSD1-like) family protein,O-acyltransferase WSD1-like protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; arachidoyl-CoA:1-dodecanol O-acyltransferase activity [GO:0102966]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; wax ester synthase activity [GO:0103095]; triglyceride biosynthetic process [GO:0019432]; wax biosynthetic process [GO:0010025],integral component of membrane [GO:0016021]; diacylglycerol O-acyltransferase activity [GO:0004144]; glycerolipid biosynthetic process [GO:0045017],diacylglycerol O-acyltransferase activity [GO:0004144],plasma membrane [GO:0005886]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; triglyceride biosynthetic process [GO:0019432] TISSUE SPECIFICITY: Expressed in flowers, top parts of stems, and leaves. Not found in roots, seeds and young seedlings. {ECO:0000269|PubMed:18621978}. locus:2169175;,locus:504955909;,locus:504956079; AT5G37300,AT2G43255,AT2G38995 Has 521 Blast hits to 512 proteins in 79 species Archae - 2 NA NA NA NA NA NA NA ENOG411DW6E SR34A A2RVS6 SR34A_ARATH Serine/arginine-rich splicing factor SR34A (At-SR34A) (At-SRp34A) (AtSR34A) (SER/ARG-rich protein 34A) FUNCTION: Probably involved in intron recognition and spliceosome assembly. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses and hormones. {ECO:0000305|PubMed:17319848}. R-ATH-72163;R-ATH-72165; 33599 Serine/arginine-rich splicing factor SR34A (At-SR34A) (At-SRp34A) (AtSR34A) (SER/ARG-rich protein 34A) cytosol [GO:0005829]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2114643; AT3G49430 pre-mRNA-splicing factor SF2-like NA NA NA NA NA NA NA ENOG411DW6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0506800 protein (cDNA, clone: J065158N07, full insert sequence),Os05g0506600 protein,Os05g0506500 protein,Os05g0506450 protein,Os05g0506700 protein B7F8S4,A0A0N7KL21,A0A0P0WP83,A0A0P0WPB5,A0A0P0WP94 B7F8S4_ORYSJ,A0A0N7KL21_ORYSJ,A0A0P0WP83_ORYSJ,A0A0P0WPB5_ORYSJ,A0A0P0WP94_ORYSJ Os05g0506800 OsJ_19134 OSNPB_050506800,Os05g0506600 OSNPB_050506600,Os05g0506500 OSNPB_050506500,Os05g0506450 OSNPB_050506450,Os05g0506700 OSNPB_050506700 ENOG411DW6G CYP704B1 Q9C788 C70B1_ARATH Cytochrome P450 704B1 (Long-chain fatty acid omega-hydroxylase) (EC 1.14.13.205) DISRUPTION PHENOTYPE: Lack of exine in pollen grain walls. {ECO:0000269|PubMed:19700560}. Abnormal pollen exine layer (no reduction in fertility)-D. Preuss-2009 FUNCTION: Involved in pollen wall development. Catalyzes the conversion of long-chain fatty acids to the corresponding omega-hydroxylated fatty acids. Omega-hydroxylated fatty acids, together with in-chain hydroxylated fatty acids, are key monomeric aliphatic building blocks for sporopollenin synthesis during exine formation. {ECO:0000269|PubMed:19700560}. 1.14.13.205 60101 Cytochrome P450 704B1 (Long-chain fatty acid omega-hydroxylase) (EC 1.14.13.205) integral component of membrane [GO:0016021]; alkane 1-monooxygenase activity [GO:0018685]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; pollen exine formation [GO:0010584]; sporopollenin biosynthetic process [GO:0080110] DEVELOPMENTAL STAGE: Specifically expressed in anthers from early stage 9 to early stage 12 of flower development, with a peak during stages 9 to 11. {ECO:0000269|PubMed:19700560}. locus:2007181; AT1G69500 cytochrome P450 Cytochrome P450 family protein, expressed (Os03g0168600 protein) (Putative plant cytochrome P-450 protein) Q8S7V0 Q8S7V0_ORYSJ OSJNBa0091P11.12 Os03g0168600 LOC_Os03g07250 OSNPB_030168600 ENOG411DW6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA l-Ala-D L-Glu epimerase-like Cis,cis-muconate cycloisomerase-like (Os01g0138900 protein) Q5ZC51 Q5ZC51_ORYSJ Os01g0138900 Os01g0138900 OSNPB_010138900 P0443D08.45 ENOG411DW6A CAT1,AAT1 Q84MA5,A0A1P8B561 CAAT1_ARATH,A0A1P8B561_ARATH Cationic amino acid transporter 1 (Amino acid transporter 1),Amino acid transporter 1 FUNCTION: High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate). Transport mostly basic amino acids, and, to a lower extent neutral and acidic amino acids. May function as a proton symporter. {ECO:0000269|PubMed:15377779, ECO:0000269|PubMed:8618839}. R-ATH-352230; 64847,48382 Cationic amino acid transporter 1 (Amino acid transporter 1),Amino acid transporter 1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171],integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, petioles, seeds, siliques, and leaves. Mostly present in major veins. {ECO:0000269|PubMed:15377779, ECO:0000269|PubMed:8618839}. locus:2127398; AT4G21120 amino acid Os12g0613100 protein (Fragment),Os03g0641200 protein (Fragment) A0A0P0YD22,A0A0N7KHQ0 A0A0P0YD22_ORYSJ,A0A0N7KHQ0_ORYSJ Os12g0613100 OSNPB_120613100,Os03g0641200 OSNPB_030641200 ENOG411DW6C CSTF77 Q8GUP1 CTF77_ARATH Cleavage stimulation factor subunit 77 (AtCstF-77) (AtCstF77) (CF-1 77 kDa subunit) (Cleavage stimulation factor 77 kDa subunit) (CSTF 77 kDa subunit) (Protein SUPPRESSORS OF OVEREXPRESSED FCA 2) (SOF2) DISRUPTION PHENOTYPE: Impaired antisense-RNA-mediated gene silencing (e.g. suppression of overexpression of FCA-mediated FLC repression). Delayed flowering and female gametophytic lethality. {ECO:0000269|PubMed:19965720}. female gametophyte lethal FUNCTION: One of the multiple factors required for polyadenylation and 3'-end cleavage of pre-mRNAs (By similarity). Required for the targeted 3' processing of antisense transcripts that triggers transcriptional silencing of the corresponding sense gene (PubMed:19965720). {ECO:0000250|UniProtKB:Q12996, ECO:0000269|PubMed:19965720}. R-ATH-72163;R-ATH-77595; 82650 Cleavage stimulation factor subunit 77 (AtCstF-77) (AtCstF77) (CF-1 77 kDa subunit) (Cleavage stimulation factor 77 kDa subunit) (CSTF 77 kDa subunit) (Protein SUPPRESSORS OF OVEREXPRESSED FCA 2) (SOF2) nucleus [GO:0005634]; mRNA binding [GO:0003729]; antisense RNA metabolic process [GO:0042868]; gene silencing by RNA [GO:0031047]; mRNA cleavage [GO:0006379]; mRNA processing [GO:0006397]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of gene silencing [GO:0060968]; RNA 3'-end processing [GO:0031123] locus:2007973; AT1G17760 cleavage stimulation factor Os12g0571900 protein (Suppressor of forked protein containing protein, expressed) (cDNA clone:J033113M06, full insert sequence) Q2QNB5 Q2QNB5_ORYSJ LOC_Os12g38380 Os12g0571900 OSNPB_120571900 ENOG411DW6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os08g0103900 protein (Putative OsNAC7 protein) (Secondary wall NAC transcription factor 3) (cDNA clone:002-168-H04, full insert sequence) Q69U51 Q69U51_ORYSJ Os08g0103900 Os08g0103900 OSNPB_080103900 P0015C07.34 ENOG411DW6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD(P)H-dependent oxidoreductase OSJNBa0064H22.3 protein (Os04g0447500 protein) Q7XV15 Q7XV15_ORYSJ Os04g0447500 OsJ_14958 OSJNBa0064H22.3 OSNPB_040447500 ENOG411DW6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat family protein expressed Os11g0646600 protein,Expressed protein (Os11g0652100 protein) (cDNA clone:J033117L21, full insert sequence),Os06g0276300 protein (Putative resistance protein),Expressed protein (Os11g0597400 protein),Os11g0598500 protein,Os11g0579200 protein (Fragment),Leucine Rich Repeat family protein, expressed (Os11g0598300 protein),Os11g0645886 protein,Os11g0645800 protein,Os11g0579400 protein (Fragment),Os06g0314400 protein,Os11g0647866 protein,Os11g0597700 protein,Os11g0647000 protein,Os11g0646800 protein,Os06g0314450 protein,Os11g0647800 protein Q2R0G0,Q2R0B4,Q5VPX2,Q2R1Q3,Q0IRT6,C7J983,Q2R1P5,A0A0P0Y548,A0A0P0Y4T5,A0A0N7KT45,A0A0P0WW83,A0A0P0Y4X0,A0A0P0Y4E8,A0A0P0Y3U7,A0A0P0Y4W9,A0A0P0Y4X4,A0A0P0WVR8,A0A0P0Y4R7 Q2R0G0_ORYSJ,Q2R0B4_ORYSJ,Q5VPX2_ORYSJ,Q2R1Q3_ORYSJ,Q0IRT6_ORYSJ,C7J983_ORYSJ,Q2R1P5_ORYSJ,A0A0P0Y548_ORYSJ,A0A0P0Y4T5_ORYSJ,A0A0N7KT45_ORYSJ,A0A0P0WW83_ORYSJ,A0A0P0Y4X0_ORYSJ,A0A0P0Y4E8_ORYSJ,A0A0P0Y3U7_ORYSJ,A0A0P0Y4W9_ORYSJ,A0A0P0Y4X4_ORYSJ,A0A0P0WVR8_ORYSJ,A0A0P0Y4R7_ORYSJ Os11g0646600 LOC_Os11g42680 OsJ_17765 OSNPB_110646600,LOC_Os11g43140 Os11g0652100 OSNPB_110652100,Os06g0276300 OsJ_20964 OSJNBa0059O19.5 OSNPB_060276300,Os11g0597400 LOC_Os11g38440 OSNPB_110597400,Os11g0598500 OSNPB_110598500,Os11g0579200 OSNPB_110579200,LOC_Os11g38520 Os11g0598300 OSNPB_110598300,Os11g0645886 OSNPB_110645886,Os11g0645800 OSNPB_110645800,Os11g0579400 OSNPB_110579400,Os06g0314400 OSNPB_060314400,Os11g0647866 OSNPB_110647866,Os11g0597700 OSNPB_110597700,Os11g0647000 OSNPB_110647000,Os11g0646800 OSNPB_110646800,Os06g0314450 OSNPB_060314450,Os11g0647800 OSNPB_110647800 ENOG411DW6I O04201,Q9LFB5 O04201_ARATH,Q9LFB5_ARATH At2g39980/T28M21.14 (HXXXD-type acyl-transferase family protein) (Putative anthocyanin 5-aromatic acyltransferase) (Transferase family protein),AT5g01210/F7J8_190 (Anthranilate N-benzoyltransferase-like protein) (HXXXD-type acyl-transferase family protein) ARA:AT2G39980-MONOMER;,ARA:AT5G01210-MONOMER; 52882,52331 At2g39980/T28M21.14 (HXXXD-type acyl-transferase family protein) (Putative anthocyanin 5-aromatic acyltransferase) (Transferase family protein),AT5g01210/F7J8_190 (Anthranilate N-benzoyltransferase-like protein) (HXXXD-type acyl-transferase family protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; response to karrikin [GO:0080167],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2061191;,locus:2150044; AT2G39980,AT5G01210 BAHD acyltransferase Os01g0854000 protein (Putative hydroxycinnamoyl transferase) (cDNA clone:J023050J22, full insert sequence),Os05g0449200 protein Q5N7V3,Q60EH6 Q5N7V3_ORYSJ,Q60EH6_ORYSJ Os01g0854000 B1096A10.1 OSNPB_010854000 P0529E05.35,Os05g0449200 Os05g0449200 B1122D01.3 OsJ_18741 OSNPB_050449200 ENOG411DW6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calmodulin NA NA NA NA NA NA NA ENOG411DW6K Q8S9I4 Q8S9I4_ARATH AT4g02720/T10P11_1 (Ras-induced vulval development antagonist protein) 48463 AT4g02720/T10P11_1 (Ras-induced vulval development antagonist protein) nucleolus organizer region [GO:0005731]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; negative regulation of transcription, DNA-templated [GO:0045892]; Notch signaling pathway [GO:0007219]; regulation of DNA methylation [GO:0044030]; regulation of rRNA processing [GO:2000232] locus:2132358; AT4G02720 Ras-induced vulval development antagonist Os09g0455400 protein (Fragment) A0A0P0XN27 A0A0P0XN27_ORYSJ Os09g0455400 OSNPB_090455400 ENOG411DW6J VIP6 B5X0I6 VIP6_ARATH Protein CTR9 homolog (Protein EARLY FLOWERING 8) (Protein VERNALIZATION INDEPENDENCE 6) DISRUPTION PHENOTYPE: Early flowering, reduced plant size and defects in floral morphology in whorls 1-3, but fully fertile flowers (PubMed:12750345). Reduced seed dormancy and increased germination rate of freshly harvested seeds (PubMed:21799800). {ECO:0000269|PubMed:12750345, ECO:0000269|PubMed:21799800}. FUNCTION: Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3) (PubMed:20363855). Involved in regulation of flowering time. Required for the expression of the MADS box genes and flowering repressors FLC, AGL27/FLM and AGL31/MAF2 (PubMed:15520273, PubMed:15472079). Required for histone H3 trimethylation on 'Lys-4' H3K4me3 at the FLC and AGL27/FLM loci (PubMed:15520273). Involved in the control of seed dormancy and germination (PubMed:21799800). {ECO:0000269|PubMed:15472079, ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:20363855, ECO:0000269|PubMed:21799800}. 124088 Protein CTR9 homolog (Protein EARLY FLOWERING 8) (Protein VERNALIZATION INDEPENDENCE 6) Cdc73/Paf1 complex [GO:0016593]; membrane [GO:0016020]; nucleus [GO:0005634]; RNA polymerase II core binding [GO:0000993]; flower development [GO:0009908]; histone methylation [GO:0016571]; negative regulation of flower development [GO:0009910]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of histone H3-K4 methylation [GO:0051569]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves and shoot apex. {ECO:0000269|PubMed:15520273}. locus:2051592; AT2G06210 RNA polymerase-associated protein CTR9 Os07g0476200 protein (Putative TPR-containing nuclear phosphoprotein),Os07g0476200 protein (Fragment),Os07g0476200 protein Q8H9E4,A0A0P0X5U2,A0A0P0X5I9 Q8H9E4_ORYSJ,A0A0P0X5U2_ORYSJ,A0A0P0X5I9_ORYSJ Os07g0476200 OSNPB_070476200 ENOG411DW6U GLN2 Q43127 GLNA2_ARATH Glutamine synthetase, chloroplastic/mitochondrial (EC 6.3.1.2) (GS2) (Glutamate--ammonia ligase) FUNCTION: The light-modulated chloroplast/mitochondrial enzyme, encoded by a nuclear gene and expressed primarily in leaves, is responsible for the reassimilation of the ammonia generated by photorespiration. {ECO:0000269|PubMed:15273293}. ARA:AT5G35630-MONOMER;MetaCyc:AT5G35630-MONOMER; R-ATH-210455;R-ATH-70614; 6.3.1.2; 6.3.1.2 47411 Glutamine synthetase, chloroplastic/mitochondrial (EC 6.3.1.2) (GS2) (Glutamate--ammonia ligase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; glutamate-ammonia ligase activity [GO:0004356]; aging [GO:0007568]; ammonia assimilation cycle [GO:0019676]; glutamine biosynthetic process [GO:0006542]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in mesophyll and epidermal cells of leaves. {ECO:0000269|PubMed:15273293}. locus:2165897; AT5G35630 glutamine synthetase Glutamine synthetase, chloroplastic (EC 6.3.1.2) (Glutamate--ammonia ligase) (OsGS2) (GS2) P14655 GLNA2_ORYSJ GLN2 RGS31 Os04g0659100 LOC_Os04g56400 OsJ_16481 OSJNBa0011F23.15 OSJNBa0015K02.2 FUNCTION: The light-modulated chloroplast enzyme, encoded by a nuclear gene and expressed primarily in leaves, is responsible for the reassimilation of the ammonia generated by photorespiration. {ECO:0000269|PubMed:10949377}. MISCELLANEOUS: Plants overexpressing GLN2 show enhanced photorespiration capacity. ENOG411DW6T FEN1 O65251,A0A1P8BFQ5,F4K191 FEN1_ARATH,A0A1P8BFQ5_ARATH,F4K191_ARATH Flap endonuclease 1 (FEN-1) (EC 3.1.-.-) (Flap structure-specific endonuclease 1) FUNCTION: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA. {ECO:0000255|HAMAP-Rule:MF_03140}.,FUNCTION: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA. {ECO:0000256|HAMAP-Rule:MF_03140, ECO:0000256|SAAS:SAAS00725765}. R-ATH-174437;R-ATH-5651801;R-ATH-5685939;R-ATH-69166; 3.1.-.- 42797,46607,50243 Flap endonuclease 1 (FEN-1) (EC 3.1.-.-) (Flap structure-specific endonuclease 1) mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; metal ion binding [GO:0046872]; DNA repair [GO:0006281]; DNA replication [GO:0006260],mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; 5'-3' exonuclease activity [GO:0008409]; 5'-flap endonuclease activity [GO:0017108]; DNA binding [GO:0003677]; magnesium ion binding [GO:0000287]; base-excision repair [GO:0006284]; DNA replication, removal of RNA primer [GO:0043137],cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; 5'-3' exonuclease activity [GO:0008409]; 5'-flap endonuclease activity [GO:0017108]; DNA binding [GO:0003677]; flap endonuclease activity [GO:0048256]; magnesium ion binding [GO:0000287]; base-excision repair [GO:0006284]; DNA replication, removal of RNA primer [GO:0043137] locus:2146824; AT5G26680 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity) Flap endonuclease 1-A (FEN-1-A) (EC 3.1.-.-) (Flap structure-specific endonuclease 1-A) (OsFEN-1) (OsFEN-1a),Os05g0540100 protein (Fragment) Q9SXQ6,A0A0P0WPM2 FEN11_ORYSJ,A0A0P0WPM2_ORYSJ FEN1A Os05g0540100 LOC_Os05g46270 OsJ_19381 OSJNBa0052K01.23,Os05g0540100 OSNPB_050540100 FUNCTION: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity). May be required for cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03140, ECO:0000269|PubMed:10798612, ECO:0000269|PubMed:14527718}. ENOG411DW6W ASHH2,EFS Q2LAE1,F4I6Z9 ASHH2_ARATH,F4I6Z9_ARATH Histone-lysine N-methyltransferase ASHH2 (EC 2.1.1.43) (ASH1 homolog 2) (H3-K4-HMTase) (Histone H3-K36 methyltransferase 8) (H3-K36-HMTase 8) (Protein EARLY FLOWERING IN SHORT DAYS) (Protein LAZARUS 2) (Protein SET DOMAIN GROUP 8),Histone-lysine N-methyltransferase DISRUPTION PHENOTYPE: Early flowering. Pleiotropic developmental effects including dwarf and bushy phenotype, reduced seed setting and defects in ovule and embryo sac development (PubMed:18070919, PubMed:19915673, PubMed:24838002). Altered responses to brassinosteroid (BR) (PubMed:24838002). {ECO:0000269|PubMed:18070919, ECO:0000269|PubMed:19915673, ECO:0000269|PubMed:24838002}. Reduced levels of lutein.,Reduced stature bushy plants reduced number of ovules reduced fertility. Homeotic conversion of floral organs such as carpeloid sepals and stamen like petals.Defects in ovule and embryo sac development.Reduced pollen.,Lutien levels reduced by 30-70%.Increased shoot branching (2-3X more branches) early flowering and reduced fertility.,Leaves are rounder and paler than wild-type.,Reduced fertility.,Reduced plant size (rosette diameter of plant is ~80% of that of wild-type).,Suppression of the late-flowering phenotype of introgressed FRI allele.,Short bushy plants. Reduced fertility-ovule number reduced by 80% Increased branching-B. Pogson-2009 FUNCTION: Histone methyltransferase involved in di and tri-methylation of 'Lys-36' of histone H3 (H3K36me2 and H3K36me3). Binds to H3 already mono- or di-methylated on 'Lys-4'(H3K4me1 or H3K4me2), but not to H3K4me3. H3K4me and H3K36me represent specific tags for epigenetic transcriptional activation. Regulates positively FLC transcription to prevent early flowering transition. Required for flowering transition in response to vernalization and for the maintenance of FLC expression in late embryos, but dispensable for the initial reactivation in early embryos during reprogramming. Seems also to modulate several traits including floral organ size, root size and dormancy. Promotes apical dominance (PubMed:16299497, PubMed:10518493, PubMed:16258034, PubMed:18070919, PubMed:19915673, PubMed:20711170). Directly involved in the tri-methylation of 'Lys-36' of histone H3 (H3K36me3) at LAZ5 chromatin to maintain a transcriptionally active state of LAZ5, a TIR-NB-LRR protein involved in innate immunity (PubMed:20949080). Required for brassinosteroid (BR)-induced gene expression and histone H3 trimethylation on 'Lys-36' (H3K36me3) in BR-regulated genes (PubMed:24838002). {ECO:0000269|PubMed:10518493, ECO:0000269|PubMed:16258034, ECO:0000269|PubMed:16299497, ECO:0000269|PubMed:18070919, ECO:0000269|PubMed:19915673, ECO:0000269|PubMed:20711170, ECO:0000269|PubMed:20949080, ECO:0000269|PubMed:24838002}. R-ATH-3214841; 2.1.1.43 193228,164317 Histone-lysine N-methyltransferase ASHH2 (EC 2.1.1.43) (ASH1 homolog 2) (H3-K4-HMTase) (Histone H3-K36 methyltransferase 8) (H3-K36-HMTase 8) (Protein EARLY FLOWERING IN SHORT DAYS) (Protein LAZARUS 2) (Protein SET DOMAIN GROUP 8),Histone-lysine N-methyltransferase chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; histone methyltransferase activity (H3-K4 specific) [GO:0042800]; zinc ion binding [GO:0008270]; anther development [GO:0048653]; carotenoid metabolic process [GO:0016116]; embryo sac development [GO:0009553]; histone H3-K36 methylation [GO:0010452]; negative regulation of flower development [GO:0009910]; plant ovule development [GO:0048481]; pollen development [GO:0009555]; positive regulation of histone methylation [GO:0031062]; regulation of gene expression, epigenetic [GO:0040029]; regulation of plant-type hypersensitive response [GO:0010363]; regulation of programmed cell death [GO:0043067]; secondary shoot formation [GO:0010223],nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Ubiquitous, with higher levels in young tissues, including shoot and root apex. Expressed in ovules, tapetum layer and microspores. {ECO:0000269|PubMed:16258034, ECO:0000269|PubMed:16299497, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:19915673}. locus:2196000; AT1G77300 Histone-lysine n-methyltransferase Os02g0554000 protein (Fragment),Os02g0553802 protein (Fragment) A0A0P0VK92,A0A0P0VK87,A0A0N7KFH0 A0A0P0VK92_ORYSJ,A0A0P0VK87_ORYSJ,A0A0N7KFH0_ORYSJ Os02g0554000 OSNPB_020554000,Os02g0553802 OSNPB_020553802 ENOG411DW6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fimbrin-like protein Os02g0719100 protein (Putative fimbrin) Q6ZGW3 Q6ZGW3_ORYSJ Os02g0719100 OJ1008_D06.3 OJ2056_H01.36 OsJ_08165 OSNPB_020719100 ENOG411DW6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin_Reduct NA NA NA NA NA NA NA ENOG411DW6P F4KGN4 F4KGN4_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 40655 Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2831869; AT5G03560 Pentatricopeptide repeat-containing protein Ribosomal protein L15 Q5Z4M3 Q5Z4M3_ORYSJ P0417E03.29-1 P0414E10.3-1 Os06g0308200 OSNPB_060308200 ENOG411DW6S NUDT5,NUDT10 Q9SJC6,Q6NPD7,A0A1P8B8N9,A0A1P8B8N5,A0A1P8B8N4,A0A1P8B8M5,A0A1P8B8P8,A0A1P8B8M9,A0A1P8B8M8,A0A1P8B8N1,A0A1P8B8M4,A0A1P8B8N6,A0A1P8B0R5 NUDT5_ARATH,NUD10_ARATH,A0A1P8B8N9_ARATH,A0A1P8B8N5_ARATH,A0A1P8B8N4_ARATH,A0A1P8B8M5_ARATH,A0A1P8B8P8_ARATH,A0A1P8B8M9_ARATH,A0A1P8B8M8_ARATH,A0A1P8B8N1_ARATH,A0A1P8B8M4_ARATH,A0A1P8B8N6_ARATH,A0A1P8B0R5_ARATH Nudix hydrolase 5 (AtNUDT5) (EC 3.6.1.-),Nudix hydrolase 10 (AtNUDT10) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase homolog 10,Nudix hydrolase homolog 5 FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}.,FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear. {ECO:0000269|PubMed:15878881}. ARA:AT2G04430-MONOMER;,ARA:AT4G25434-MONOMER; 3.6.1.-,3.6.1.-; 3.6.1.13; 3.6.1.22 34294,31816,27103,25069,28015,32369,25835,24736,24184,26550,29113,35648,32080 Nudix hydrolase 5 (AtNUDT5) (EC 3.6.1.-),Nudix hydrolase 10 (AtNUDT10) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase homolog 10,Nudix hydrolase homolog 5 hydrolase activity [GO:0016787]; metal ion binding [GO:0046872],ADP-ribose diphosphatase activity [GO:0047631]; metal ion binding [GO:0046872]; NAD binding [GO:0051287]; NAD+ diphosphatase activity [GO:0000210],hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:15878881}.,TISSUE SPECIFICITY: Expressed in roots, stems and, at lower level, leaves. {ECO:0000269|PubMed:15878881}. locus:2058364;,locus:1005716200; AT2G04430,AT4G25434 Nudix hydrolase Os06g0634300 protein (cDNA clone:J023074C15, full insert sequence),Os06g0634300 protein (Fragment) B7EII4,A0A0P0WZC6 B7EII4_ORYSJ,A0A0P0WZC6_ORYSJ Os06g0634300 OSNPB_060634300 ENOG411DW6Y Q8L7Z2,F4IYR7 Q8L7Z2_ARATH,F4IYR7_ARATH At3g15410/MJK13_7 (Leucine-rich repeat (LRR) family protein),Leucine-rich repeat (LRR) family protein 64104,64850 At3g15410/MJK13_7 (Leucine-rich repeat (LRR) family protein),Leucine-rich repeat (LRR) family protein plasma membrane [GO:0005886]; signal transduction [GO:0007165] locus:2090196; AT3G15410 Leucine-rich repeat-containing protein Plant intracellular Ras-group-related LRR protein 6 (Intracellular Ras-group-related LRR protein 6) (OsIRL6) Q6K7R2 PIRL6_ORYSJ IRL6 Os02g0826600 LOC_Os02g58030 P0452F04.20 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20949308}. FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. ENOG411DW6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os08g0124700 protein (Putative receptor-type protein kinase LRK1),Os08g0124000 protein (Putative receptor kinase Lecrk),Os08g0125800 protein (cDNA, clone: J065032N17, full insert sequence),Os08g0124100 protein (Putative vegetative lectin) (cDNA clone:002-146-D02, full insert sequence),Os08g0123900 protein Q6ZFB3,Q6YX21,B7F8F0,Q6YX22,Q6YX20,A0A0P0XB61 Q6ZFB3_ORYSJ,Q6YX21_ORYSJ,B7F8F0_ORYSJ,Q6YX22_ORYSJ,Q6YX20_ORYSJ,A0A0P0XB61_ORYSJ Os08g0124700 Os08g0124700 OJ1126_D10.16 OsJ_25882 OSNPB_080124700,OSJNBa0073J19.41-1 Os08g0124000 OSNPB_080124000,Os08g0125800 OsJ_25888 OSNPB_080125800,Os08g0124000 OSJNBa0073J19.41-2 OSNPB_080124000,Os08g0124100 Os08g0124100 OsJ_25876 OSJNBa0073J19.42 OSNPB_080124100,Os08g0123900 OSNPB_080123900 ENOG411DW6Z PGLP1B,PGLP1A P0DKC4,P0DKC3 PGP1B_ARATH,PGP1A_ARATH Phosphoglycolate phosphatase 1B, chloroplastic (EC 3.1.3.18),Phosphoglycolate phosphatase 1A, chloroplastic (EC 3.1.3.18) DISRUPTION PHENOTYPE: Chlorotic primary leaves soon after germination and plants not viable when grown under ambient air, but normal growth under CO(2)-enriched air. {ECO:0000269|PubMed:17478634}. FUNCTION: Photorespiratory enzyme that dephosphorylates the 2-phosphoglycolate produced by the RuBisCO oxygenation reaction. {ECO:0000250}.,FUNCTION: Photorespiratory enzyme that dephosphorylates the 2-phosphoglycolate produced by the RuBisCO oxygenation reaction. {ECO:0000269|PubMed:17478634}. 3.1.3.18 39762 Phosphoglycolate phosphatase 1B, chloroplastic (EC 3.1.3.18),Phosphoglycolate phosphatase 1A, chloroplastic (EC 3.1.3.18) chloroplast [GO:0009507]; cytosol [GO:0005829]; phosphatase activity [GO:0016791]; phosphoglycolate phosphatase activity [GO:0008967]; dephosphorylation [GO:0016311]; photorespiration [GO:0009853],chloroplast [GO:0009507]; cytosol [GO:0005829]; phosphoglycolate phosphatase activity [GO:0008967]; photorespiration [GO:0009853] AT5G36790,AT5G36700 Phosphoglycolate phosphatase OSJNBa0076N16.12 protein (OSJNBa0084K20.14 protein) (Os04g0490800 protein) (cDNA clone:001-043-B10, full insert sequence),Os12g0420000 protein Q7X7H3,A0A0P0Y9D9 Q7X7H3_ORYSJ,A0A0P0Y9D9_ORYSJ Os04g0490800 Os04g0490800 OsJ_15286 OSJNBa0076N16.12 OSJNBa0084K20.14 OSNPB_040490800,Os12g0420000 OSNPB_120420000 ENOG411DW65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CYCc NA NA NA NA NA NA NA ENOG411DW64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA thioredoxin reductase Thioredoxin reductase NTRB (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase B) (OsNTRB),Thioredoxin reductase NTRA (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase A) (OsNTRA),Os04g0524136 protein Q6ZFU6,Q69PS6,A0A0P0WCK3 NTRB_ORYSJ,NTRA_ORYSJ,A0A0P0WCK3_ORYSJ NTRB Os02g0713400 LOC_Os02g48290 OJ1479_B12.9 OsJ_08126,Os06g0327300 LOC_Os06g22140 OSJNBb0039F24.13,Os04g0524136 OSNPB_040524136 FUNCTION: Possesses thioredoxin-disulfide reductase activity. {ECO:0000250}. MISCELLANEOUS: The active site is a redox-active disulfide bond. {ECO:0000250}. ENOG411DW67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANTH domain Os05g0112101 protein (cDNA, clone: J065141G20, full insert sequence) Q65XV1 Q65XV1_ORYSJ Os05g0112101 Os05g0112101 OSNPB_050112101 P0016H04.17 ENOG411DW66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os08g0125300 protein (cDNA clone:J023104P21, full insert sequence),Os11g0157000 protein Q0J8A6,A0A0P0XZL5 Q0J8A6_ORYSJ,A0A0P0XZL5_ORYSJ Os08g0125300 Os08g0125300 OSNPB_080125300,Os11g0157000 OSNPB_110157000 ENOG411DW61 Q9LTV9 Q9LTV9_ARATH Defective in cullin neddylation protein FUNCTION: Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. {ECO:0000256|RuleBase:RU410713}. R-ATH-8951664; 29010 Defective in cullin neddylation protein ubiquitin ligase complex [GO:0000151]; cullin family protein binding [GO:0097602]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin-like protein binding [GO:0032182]; positive regulation of ubiquitin-protein transferase activity [GO:0051443]; protein neddylation [GO:0045116] locus:2087720; AT3G12760 DCN1-like protein Defective in cullin neddylation protein Q67UK2 Q67UK2_ORYSJ Os06g0233400 OSNPB_060233400 P0479H10.34 FUNCTION: Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. {ECO:0000256|RuleBase:RU410713}. ENOG411DW60 NAA10 Q9FKI4 NAA10_ARATH N-terminal acetyltransferase A complex catalytic subunit NAA10 (AtNAA10) (EC 2.3.1.255) DISRUPTION PHENOTYPE: Embryo lethal when homozygous. {ECO:0000269|PubMed:26184543, ECO:0000269|PubMed:27385766}. FUNCTION: Catalytic subunit of the NatA N-alpha-acetyltransferase complex (PubMed:26184543, PubMed:25966763). Required for male gametocyte development, embryogenesis, suspensor development and the formation of the quiescent center (QC) in the root meristem (PubMed:27385766, PubMed:27610925). Involved in plant immunity through the regulation of SNC1 and RPM1 stability (PubMed:25966763). {ECO:0000269|PubMed:25966763, ECO:0000269|PubMed:26184543, ECO:0000269|PubMed:27385766, ECO:0000269|PubMed:27610925}. ARA:AT5G13780-MONOMER; 2.3.1.255 21715 N-terminal acetyltransferase A complex catalytic subunit NAA10 (AtNAA10) (EC 2.3.1.255) cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; NatA complex [GO:0031415]; N-acetyltransferase activity [GO:0008080]; peptide-glutamate-N-acetyltransferase activity [GO:1990190]; peptide-serine-N-acetyltransferase activity [GO:1990189]; embryo development ending in seed dormancy [GO:0009793]; internal protein amino acid acetylation [GO:0006475]; N-terminal peptidyl-glutamic acid acetylation [GO:0018002]; N-terminal peptidyl-serine acetylation [GO:0017198]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in leaves, roots, shoots and flowers. {ECO:0000269|PubMed:26184543}. locus:2177120; AT5G13780 FR47-like protein OSJNBa0043L09.27 protein (Os04g0635800 protein) (cDNA clone:001-038-E01, full insert sequence) (cDNA clone:002-186-C03, full insert sequence) (cDNA clone:006-308-D03, full insert sequence) (cDNA clone:J013029B17, full insert sequence) Q7XQS0 Q7XQS0_ORYSJ Os04g0635800 Os04g0635800 OSJNBa0043L09.27 OSNPB_040635800 ENOG411DW63 PATL6 Q9SCU1 PATL6_ARATH Patellin-6 FUNCTION: Carrier protein that may be involved in membrane-trafficking events associated with cell-plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites (By similarity). {ECO:0000250}. MISCELLANEOUS: 'Patella' means 'small plate' in Latin. 46510 Patellin-6 cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; cell cycle [GO:0007049]; cell division [GO:0051301]; transport [GO:0006810] locus:2098282; AT3G51670 CRAL/TRIO domain Os05g0345175 protein (Fragment),Os05g0345100 protein A0A0N7KKK7,A0A0P0WL29 A0A0N7KKK7_ORYSJ,A0A0P0WL29_ORYSJ Os05g0345175 OSNPB_050345175,Os05g0345100 OSNPB_050345100 ENOG411DW62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARM repeat protein interacting with NA NA NA NA NA NA NA ENOG411DW69 Q84K41,F4IR82 Q84K41_ARATH,F4IR82_ARATH Nucleic acid binding/RNA binding protein (Uncharacterized protein At2g02570),Nucleic acid binding/RNA binding protein R-ATH-72163; 33470,32035 Nucleic acid binding/RNA binding protein (Uncharacterized protein At2g02570),Nucleic acid binding/RNA binding protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397] locus:2065269; AT2G02570 Survival of motor neuron-related-splicing factor Os08g0109900 protein (Fragment) A0A0P0XB85 A0A0P0XB85_ORYSJ Os08g0109900 OSNPB_080109900 ENOG411DW68 SKIP16 Q9LND7,A0A1P8ANB4,A0A1P8AND2 SKI16_ARATH,A0A1P8ANB4_ARATH,A0A1P8AND2_ARATH F-box protein SKIP16 (SKP1-interacting partner 16),SKP1/ASK-interacting protein 16 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 48976,42324,34267 F-box protein SKIP16 (SKP1-interacting partner 16),SKP1/ASK-interacting protein 16 SCF ubiquitin ligase complex [GO:0019005]; protein ubiquitination [GO:0016567] locus:2198826; AT1G06110 F-Box protein Expressed protein (Os11g0265200 protein),F-box domain containing protein, expressed (F-box domain, putative) (Os11g0264700 protein),F-box domain containing protein, expressed (Os11g0264700 protein) (cDNA clone:J033136N20, full insert sequence) Q53LT0,Q53LT6,Q2R7K1 Q53LT0_ORYSJ,Q53LT6_ORYSJ,Q2R7K1_ORYSJ Os11g0265200 LOC_Os11g16390 OSNPB_110265200,LOC_Os11g16330 Os11g0264700 OSNPB_110264700,Os11g0264700 LOC_Os11g16330 OsJ_33571 OSNPB_110264700 ENOG411EK1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E16I TBL31 Q1PFD9 TBL31_ARATH Protein trichome birefringence-like 31 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 48589 Protein trichome birefringence-like 31 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; xylan O-acetyltransferase activity [GO:1990538]; xylan biosynthetic process [GO:0045492] locus:2032677; AT1G73140 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411EHRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os12g0522516 protein (Fragment) A0A0P0YAT6 A0A0P0YAT6_ORYSJ Os12g0522516 OSNPB_120522516 ENOG411EHRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Os02g0124200 protein A0A0P0VE32 A0A0P0VE32_ORYSJ Os02g0124200 OSNPB_020124200 ENOG411EHRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retroviral aspartyl protease NA NA NA NA NA NA NA ENOG411EHRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EHR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EJU1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DCD NA NA NA NA NA NA NA ENOG411EJU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Timeless protein NA NA NA NA NA NA NA ENOG411EJUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411EJUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EJUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent protease La (LON) domain NA NA NA NA NA NA NA ENOG411EJUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Zinc finger FYVE domain containing 26 NA NA NA NA NA NA NA ENOG411EJUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411EJUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cwf21 domain NA NA NA NA NA NA NA ENOG411EJUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rrp15p NA NA NA NA NA NA NA ENOG411EJUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0726700 protein,Os10g0132400 protein Q0JJP4,Q8H899 Q0JJP4_ORYSJ,Q8H899_ORYSJ Os01g0726700 Os01g0726700 OSNPB_010726700,OSJNBb0004A06.11 Os10g0132400 LOC_Os10g04280 OSNPB_100132400 ENOG411EJUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJUU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNase P subunit p30 NA NA NA NA NA NA NA ENOG411DRVX RPP0A,RPP0B,RPP0C O04204,Q42112,P57691,A8MQR4 RLA01_ARATH,RLA02_ARATH,RLA03_ARATH,A8MQR4_ARATH 60S acidic ribosomal protein P0-1,60S acidic ribosomal protein P0-2,60S acidic ribosomal protein P0-3,60S acidic ribosomal protein P0 FUNCTION: Ribosomal protein P0 is the functional equivalent of E.coli protein L10.,FUNCTION: Ribosomal protein P0 is the functional equivalent of E.coli protein L10. {ECO:0000256|PIRNR:PIRNR039087}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 33667,34133,34390,30618 60S acidic ribosomal protein P0-1,60S acidic ribosomal protein P0-2,60S acidic ribosomal protein P0-3,60S acidic ribosomal protein P0 cytosolic ribosome [GO:0022626]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; copper ion binding [GO:0005507]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043]; ribosome assembly [GO:0042255],cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255],ribosome [GO:0005840]; ribosome biogenesis [GO:0042254] locus:2061231;,locus:2083564;,locus:2074623; AT2G40010,AT3G09200,AT3G11250 60S acidic ribosomal protein 60S acidic ribosomal protein P0,Os08g0130500 protein (Fragment) P41095,Q2RAW0,Q2QY46,A0A0P0XBD7 RLA0_ORYSJ,Q2RAW0_ORYSJ,Q2QY46_ORYSJ,A0A0P0XBD7_ORYSJ Os08g0130500 LOC_Os08g03640 P0582D05.130-1,Os11g0135400 LOC_Os11g04070 OsJ_25933 OSNPB_110135400,Os12g0133050 LOC_Os12g03880 OsJ_35136 OSNPB_120133050,Os08g0130500 OSNPB_080130500 FUNCTION: Ribosomal protein P0 is the functional equivalent of E.coli protein L10.,FUNCTION: Ribosomal protein P0 is the functional equivalent of E.coli protein L10. {ECO:0000256|PIRNR:PIRNR039087}. ENOG411DRVY Q9SUW6,Q9LEV6 Q9SUW6_ARATH,Q9LEV6_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g22530),At5g10830 (Embryonic abundant protein-like) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) 29106,29210 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g22530),At5g10830 (Embryonic abundant protein-like) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2127550;,locus:2183700; AT4G22530,AT5G10830 Methyltransferase domain Os01g0589200 protein A0A0P0V4N8 A0A0P0V4N8_ORYSJ Os01g0589200 OSNPB_010589200 ENOG411DRVZ ORP3C,ORP3B,ORP3A,UNE18 Q93Y40,Q9SR33,Q9LZM1,A0A1P8BCC1,A0A1P8BCB9 ORP3C_ARATH,ORP3B_ARATH,ORP3A_ARATH,A0A1P8BCC1_ARATH,A0A1P8BCB9_ARATH Oxysterol-binding protein-related protein 3C (OSBP-related protein 3C),Oxysterol-binding protein-related protein 3B (OSBP-related protein 3B),Oxysterol-binding protein-related protein 3A (OSBP-related protein 3A) (Protein UNFERTILIZED EMBRYO SAC 18),Oxysterol-binding family protein DISRUPTION PHENOTYPE: Unfertilized ovules, but normal pollen tube attraction. {ECO:0000269|PubMed:15634699}. FUNCTION: May be involved in the transport of sterols. {ECO:0000250}.,FUNCTION: Oxysterol-binding protein that may be involved in the transport of sterols between the ER and the Golgi. Binds beta-sitosterol. Required for ovule fertilization. {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:19207211}. 51966,51956,51545,36187,49035 Oxysterol-binding protein-related protein 3C (OSBP-related protein 3C),Oxysterol-binding protein-related protein 3B (OSBP-related protein 3B),Oxysterol-binding protein-related protein 3A (OSBP-related protein 3A) (Protein UNFERTILIZED EMBRYO SAC 18),Oxysterol-binding family protein cytosol [GO:0005829]; lipid binding [GO:0008289]; lipid transport [GO:0006869],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; sterol binding [GO:0032934]; double fertilization forming a zygote and endosperm [GO:0009567]; lipid transport [GO:0006869]; single fertilization [GO:0007338] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16897474}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and pollen. {ECO:0000269|PubMed:16897474}. locus:2148368;,locus:2083594;,locus:2185163; AT5G59420,AT3G09300,AT5G02100 protein)-related protein Os03g0274000 protein (Oxysterol-binding protein, expressed),Os03g0274000 protein (Fragment) Q10NC7,A0A0P0VWD0 Q10NC7_ORYSJ,A0A0P0VWD0_ORYSJ Os03g0274000 LOC_Os03g16690 Os03g0274000 OSNPB_030274000,Os03g0274000 OSNPB_030274000 ENOG411DRVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein, expressed (Os10g0126700 protein),F-box domain containing protein, expressed (Os10g0126500 protein) (cDNA clone:002-107-A03, full insert sequence),Os04g0441333 protein,Os04g0440300 protein (Fragment),Os04g0440400 protein Q33BA2,Q33BA4,B9FCI9,Q0JCZ9,A0A0P0WAV4 Q33BA2_ORYSJ,Q33BA4_ORYSJ,B9FCI9_ORYSJ,Q0JCZ9_ORYSJ,A0A0P0WAV4_ORYSJ Os10g0126700 LOC_Os10g03750 OSNPB_100126700,Os10g0126500 LOC_Os10g03730 Os10g0126500 OSNPB_100126500,Os04g0441333 OsJ_16169 OSNPB_040441333,Os04g0440300 Os04g0440300 OSNPB_040440300,Os04g0440400 OSNPB_040440400 ENOG411DRVU PHT1-1,PHT1-4,PHT1-3,PHT1-7,PHT1-2,PHT1-5 Q8VYM2,Q96303,O48639,Q494P0,Q96243,Q8GYF4 PHT11_ARATH,PHT14_ARATH,PHT13_ARATH,PHT17_ARATH,PHT12_ARATH,PHT15_ARATH Inorganic phosphate transporter 1-1 (AtPht1;1) (H(+)/Pi cotransporter),Inorganic phosphate transporter 1-4 (AtPht1;4) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-3 (AtPht1;3) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-7 (AtPht1;7) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-2 (AtPht1;2) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-5 (AtPht1;5) (H(+)/Pi cotransporter) Enhanced arsenic accumulation. FUNCTION: High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate. {ECO:0000269|PubMed:15272879, ECO:0000269|PubMed:8927627, ECO:0000269|PubMed:9192698}.,FUNCTION: High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate. {ECO:0000269|PubMed:15272879, ECO:0000269|PubMed:15604713, ECO:0000269|PubMed:8927627}.,FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. ARA:GQT-2848-MONOMER;,ARA:GQT-2244-MONOMER;,ARA:GQT-1773-MONOMER; 57616,58599,57257,58333,57644,59214 Inorganic phosphate transporter 1-1 (AtPht1;1) (H(+)/Pi cotransporter),Inorganic phosphate transporter 1-4 (AtPht1;4) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-3 (AtPht1;3) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-7 (AtPht1;7) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-2 (AtPht1;2) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-5 (AtPht1;5) (H(+)/Pi cotransporter) integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; arsenate ion transmembrane transporter activity [GO:1901683]; inorganic phosphate transmembrane transporter activity [GO:0005315]; phosphate ion transmembrane transporter activity [GO:0015114]; symporter activity [GO:0015293]; arsenate ion transmembrane transport [GO:1901684]; cellular response to phosphate starvation [GO:0016036]; phosphate ion transport [GO:0006817],Golgi apparatus [GO:0005794]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; inorganic phosphate transmembrane transporter activity [GO:0005315]; substrate-specific transmembrane transporter activity [GO:0022891]; symporter activity [GO:0015293]; phosphate ion transport [GO:0006817]; response to abscisic acid [GO:0009737],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; inorganic phosphate transmembrane transporter activity [GO:0005315]; substrate-specific transmembrane transporter activity [GO:0022891]; symporter activity [GO:0015293]; phosphate ion transport [GO:0006817],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; arsenate ion transmembrane transporter activity [GO:1901683]; inorganic phosphate transmembrane transporter activity [GO:0005315]; symporter activity [GO:0015293]; arsenate ion transmembrane transport [GO:1901684]; phosphate ion transport [GO:0006817],integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; inorganic phosphate transmembrane transporter activity [GO:0005315]; substrate-specific transmembrane transporter activity [GO:0022891]; symporter activity [GO:0015293]; cellular response to phosphate starvation [GO:0016036]; phosphate ion transport [GO:0006817],integral component of plasma membrane [GO:0005887]; inorganic phosphate transmembrane transporter activity [GO:0005315]; substrate-specific transmembrane transporter activity [GO:0022891]; symporter activity [GO:0015293]; phosphate ion transport [GO:0006817] TISSUE SPECIFICITY: Mostly expressed in roots, especially in trichoblasts and in emerging secondary roots and root hairs, but not in root tips. Also present in hydathodes, axillary buds and peripheral endosperm of germinating seeds. {ECO:0000269|PubMed:12164813, ECO:0000269|PubMed:12226502, ECO:0000269|PubMed:16233751, ECO:0000269|PubMed:8927627, ECO:0000269|PubMed:9025304, ECO:0000269|PubMed:9192698}.,TISSUE SPECIFICITY: Mostly expressed in roots, in tissues connecting the lateral roots to the primary root. Also present in flowers, in senescing anther filaments and in the abscission zone at the base of siliques. Expressed in hydathodes and axillary buds, and in some senescing leaves. After Pi starvation, localized in all cells of undifferentiated root segments, including root tips and root hairs, and in the epidermis, cortex and stellar regions of mature root segments. {ECO:0000269|PubMed:12164813, ECO:0000269|PubMed:12226502, ECO:0000269|PubMed:15604713, ECO:0000269|PubMed:8927627, ECO:0000269|PubMed:9872450}.,TISSUE SPECIFICITY: Mainly expressed in roots, especially in the stele of the primary root, the pericycle and trichoblasts of secondary roots. To a lower extent, present in hydathodes and vascular tissues of young leaves. {ECO:0000269|PubMed:12164813}.,TISSUE SPECIFICITY: Mature pollen. {ECO:0000269|PubMed:12164813}.,TISSUE SPECIFICITY: Root specific, especially in trichoblasts. In mature plants, localized in root cortical cells and young lateral roots. {ECO:0000269|PubMed:12164813, ECO:0000269|PubMed:9025304}.,TISSUE SPECIFICITY: Mainly expressed in shoots, First throughout cotyledons and hypocotyls and later restricted to vascular tissues, mostly in phloem. Present in senescing leaves. Also expressed in floral buds and sepals. {ECO:0000269|PubMed:12164813}. locus:2176461;,locus:2064895;,locus:2176471;,locus:2102450;,locus:2176481;,locus:2046432; AT5G43350,AT2G38940,AT5G43360,AT3G54700,AT5G43370,AT2G32830 Inorganic phosphate transporter Probable inorganic phosphate transporter 1-12 (OsPT12) (OsPht1;12) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-5 (OsPT5) (OsPht1;5) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-8 (OsPT8) (OsPht1;8) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-4 (OsPT4) (OsPht1;4) (H(+)/Pi cotransporter) (OsPT1) Q8H074,Q7X7V2,Q8H6G8,Q8H6H2 PT112_ORYSJ,PHT15_ORYSJ,PHT18_ORYSJ,PHT14_ORYSJ PHT1-12 PT12 Os03g0150500 LOC_Os03g05610 OsJ_009085 OSJNBb0050N02.17,PHT1-5 PT5 Os04g0185600 LOC_Os04g10690 OsJ_013381 OSJNBb0003A12.6,PHT1-8 PT8 Os10g0444700 LOC_Os10g30790 OsJ_030443,PHT1-4 PHT1-2 PT1 PT4 Os04g0186400 LOC_Os04g10750 OsJ_013378 OSJNBb0003A12.10 FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. ENOG411DRVV BHLH13 Q9LNJ5 BH013_ARATH Transcription factor bHLH13 (Basic helix-loop-helix protein 13) (AtbHLH13) (bHLH 13) (Transcription factor EN 39) (bHLH transcription factor bHLH013) 66002 Transcription factor bHLH13 (Basic helix-loop-helix protein 13) (AtbHLH13) (bHLH 13) (Transcription factor EN 39) (bHLH transcription factor bHLH013) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2035237; AT1G01260 Transcription factor Os01g0235700 protein (cDNA clone:J013000P13, full insert sequence) (cDNA clone:J023047M20, full insert sequence) Q0JP90 Q0JP90_ORYSJ Os01g0235700 Os01g0235700 OSNPB_010235700 ENOG411DRVW Q8RWV5 Q8RWV5_ARATH Cell differentiation, Rcd1-like protein (Putative cell differentiation protein) 34711 Cell differentiation, Rcd1-like protein (Putative cell differentiation protein) CCR4-NOT core complex [GO:0030015]; P-body [GO:0000932]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288] locus:2091936; AT3G20800 Cell differentiation protein Cell differentiation protein rcd1, putative, expressed (Os03g0784800 protein) (Putative cell differentiation protein) (cDNA, clone: J065099H20, full insert sequence),Os04g0613400 protein,Os02g0296400 protein,Os02g0301700 protein (Fragment),Os07g0565200 protein Q10CF3,B9FCG5,A0A0P0VHV6,A0A0P0VHZ9,A0A0P0X7Q5 Q10CF3_ORYSJ,B9FCG5_ORYSJ,A0A0P0VHV6_ORYSJ,A0A0P0VHZ9_ORYSJ,A0A0P0X7Q5_ORYSJ OSJNBb0093E13.3 Os03g0784800 LOC_Os03g57130 OsJ_12851 OSNPB_030784800,Os04g0613400 OsJ_16137 OsJ_24766 OSNPB_040613400,Os02g0296400 OSNPB_020296400,Os02g0301700 OSNPB_020301700,Os07g0565200 OSNPB_070565200 ENOG411DRVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase Os12g0563000 protein A0A0P0YBI3 A0A0P0YBI3_ORYSJ Os12g0563000 OSNPB_120563000 ENOG411DRVQ SFH7,SFH1 Q9SIW3,F4JLE5,A0A1P8AX32 SFH7_ARATH,SFH1_ARATH,A0A1P8AX32_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH7 (Protein SEC FOURTEEN HOMOLOGS 7) (AtSFH7),Phosphatidylinositol/phosphatidylcholine transfer protein SFH1 (Phosphatidylinositol transfer protein 1) (AtPITP1) (Protein CAN OF WORMS1) (Protein SEC FOURTEEN HOMOLOGS 1) (AtSFH1) (Protein SHORT ROOT HAIR 1),Sec14p-like phosphatidylinositol transfer family protein DISRUPTION PHENOTYPE: Exhibits short branched root hairs. {ECO:0000269|PubMed:15546352, ECO:0000269|PubMed:15728190, ECO:0000269|PubMed:23456248, ECO:0000269|PubMed:9390433}. FUNCTION: Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}.,FUNCTION: Required for transport of secretory proteins from the Golgi complex (By similarity). Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro. Plays a role in root hair tip elongation as a key regulator of polarized membrane trafficking. May promote the PtdIns(4,5)P2 synthesis and organization in root hair membrane. {ECO:0000250, ECO:0000269|PubMed:15546352, ECO:0000269|PubMed:15728190, ECO:0000269|PubMed:17335879, ECO:0000269|PubMed:23456248, ECO:0000269|PubMed:9390433}. 62860,63287,50731 Phosphatidylinositol/phosphatidylcholine transfer protein SFH7 (Protein SEC FOURTEEN HOMOLOGS 7) (AtSFH7),Phosphatidylinositol/phosphatidylcholine transfer protein SFH1 (Phosphatidylinositol transfer protein 1) (AtPITP1) (Protein CAN OF WORMS1) (Protein SEC FOURTEEN HOMOLOGS 1) (AtSFH1) (Protein SHORT ROOT HAIR 1),Sec14p-like phosphatidylinositol transfer family protein Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; protein transport [GO:0015031],Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; root hair tip [GO:0035619]; transporter activity [GO:0005215]; cell tip growth [GO:0009932]; protein transport [GO:0015031]; root epidermal cell differentiation [GO:0010053]; root hair cell tip growth [GO:0048768]; root hair elongation [GO:0048767],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Predominantly expressed in roots. Detected solely in root trichoblast cell files engaged in root hair growth, hydathodes, shoot apical meristem, and apical cells of the root cap. {ECO:0000269|PubMed:15546352, ECO:0000269|PubMed:15728190}. locus:2042634;,locus:2139564; AT2G16380,AT4G34580 SEC14 cytosolic factor Os02g0440900 protein,Os10g0122600 protein (Fragment) A0A0P0VIJ6,A0A0P0XS90 A0A0P0VIJ6_ORYSJ,A0A0P0XS90_ORYSJ Os02g0440900 OSNPB_020440900,Os10g0122600 OSNPB_100122600 ENOG411DRVR AGD2,AGD4 Q9C6C3,Q9SMX5,A0A1P8AMD8,A0A1P8ATE8,A0A1P8ATB6 AGD2_ARATH,AGD4_ARATH,A0A1P8AMD8_ARATH,A0A1P8ATE8_ARATH,A0A1P8ATB6_ARATH ADP-ribosylation factor GTPase-activating protein AGD2 (ARF GAP AGD2) (Protein ARF-GAP DOMAIN 2) (AtAGD2),ADP-ribosylation factor GTPase-activating protein AGD4 (ARF GAP AGD4) (GCN4-complementing protein 1) (Protein ARF-GAP DOMAIN 4) (AtAGD4),ARF-GAP domain 4,ARF-GAP domain 2 FUNCTION: Probable GTPase-activating protein. {ECO:0000250}. 87803,86978,87486,75553,68538 ADP-ribosylation factor GTPase-activating protein AGD2 (ARF GAP AGD2) (Protein ARF-GAP DOMAIN 2) (AtAGD2),ADP-ribosylation factor GTPase-activating protein AGD4 (ARF GAP AGD4) (GCN4-complementing protein 1) (Protein ARF-GAP DOMAIN 4) (AtAGD4),ARF-GAP domain 4,ARF-GAP domain 2 cytoplasm [GO:0005737]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872],GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaf and shoot apical meristems and siliques. {ECO:0000269|PubMed:16698946}. locus:2025850;,locus:2197359; AT1G60860,AT1G10870 ADP-ribosylation factor GTPase-activating protein Os02g0632500 protein (Putative ADP-ribosylation factor-directed GTPase activating protein) Q6H462 Q6H462_ORYSJ Os02g0632500 Os02g0632500 B1250G12.27 OJ1643_A10.2 OSNPB_020632500 ENOG411DRVS O82264,Q9LYC2 NPL42_ARATH,NPL41_ARATH NPL4-like protein 2,NPL4-like protein 1 FUNCTION: May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. {ECO:0000250}. PATHWAY: Protein degradation; proteasomal ubiquitin-dependent pathway. R-ATH-110320; 46170,46497 NPL4-like protein 2,NPL4-like protein 1 cytosol [GO:0005829]; nucleus [GO:0005634]; ubiquitin binding [GO:0043130]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2043443;,locus:2099142; AT2G47970,AT3G63000 npl4-like protein NPL4-like protein Q9AS33 NPL4_ORYSJ Os01g0377700 LOC_Os01g27990 P0416G11.21-1 FUNCTION: May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. {ECO:0000250}. ENOG411DRVM HMA4,HMA2 O64474,Q9SZW4 HMA4_ARATH,HMA2_ARATH Putative cadmium/zinc-transporting ATPase HMA4 (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 4) (Putative cadmium/zinc-transporting ATPase 2),Cadmium/zinc-transporting ATPase HMA2 (EC 3.6.3.3) (EC 3.6.3.5) (Cadmium/zinc-transporting ATPase 3) (Protein HEAVY METAL ATPASE 2) FUNCTION: Involved in cadmium/zinc transport. {ECO:0000305}.,FUNCTION: Plays an important role in zinc transport and homeostasis. Could also be involved in cadmium detoxification. {ECO:0000269|PubMed:15100400}. ARA:AT2G19110-MONOMER;,ARA:AT4G30110-MONOMER; 3.6.3.5; 3.6.3.3; 3.6.3.5 127209,101990 Putative cadmium/zinc-transporting ATPase HMA4 (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 4) (Putative cadmium/zinc-transporting ATPase 2),Cadmium/zinc-transporting ATPase HMA2 (EC 3.6.3.3) (EC 3.6.3.5) (Cadmium/zinc-transporting ATPase 3) (Protein HEAVY METAL ATPASE 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; cadmium-exporting ATPase activity [GO:0008551]; metal ion binding [GO:0046872]; zinc-exporting ATPase activity [GO:0016463]; cadmium ion transport [GO:0015691]; metal ion transport [GO:0030001]; response to cadmium ion [GO:0046686]; response to cobalt ion [GO:0032025]; response to metal ion [GO:0010038]; response to zinc ion [GO:0010043]; zinc II ion transport [GO:0006829]; zinc ion homeostasis [GO:0055069],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cadmium-exporting ATPase activity [GO:0008551]; metal ion binding [GO:0046872]; zinc-exporting ATPase activity [GO:0016463]; zinc ion homeostasis [GO:0055069] TISSUE SPECIFICITY: Predominantly expressed in the vascular tissues of roots, stems, and leaves. Also detected in developing anthers. {ECO:0000269|PubMed:15100400}. locus:2059083;,locus:2126490; AT2G19110,AT4G30110 cadmium zinc-transporting ATPase Cadmium/zinc-transporting ATPase HMA2 (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 2) (OsHMA2),Os06g0700700 protein A3BF39,Q0D9S9 HMA2_ORYSJ,Q0D9S9_ORYSJ HMA2 Os06g0700700 LOC_Os06g48720 OsJ_22530,Os06g0700700 Os06g0700700 OSNPB_060700700 DISRUPTION PHENOTYPE: Reduced plant height and biomass. Reduced grain yield. Decreased levels of zinc an cadmium in grain, rachis, husk and nodes. {ECO:0000269|PubMed:22123790, ECO:0000269|PubMed:23575418}. FUNCTION: Zinc/cadmium transporter that plays an essential role in promoting translocation of zinc and cadmium from roots to shoots (PubMed:21388416, PubMed:22123790, PubMed:23575418, PubMed:22548273). May control cadmium loading into xylem (PubMed:21388416). In roots, transports zinc and cadmium from the apoplast to the symplast to facilitate translocation via the phloem. In nodes, functions to load zinc and cadmium to the phloem for the preferential distribution to the upper nodes and panicles (PubMed:23575418). {ECO:0000269|PubMed:21388416, ECO:0000269|PubMed:22123790, ECO:0000269|PubMed:22548273, ECO:0000269|PubMed:23575418}. ENOG411DRVN MEE6.26 Q9FLL1 Q9FLL1_ARATH RNA-binding NOB1-like protein 66725 RNA-binding NOB1-like protein cytoplasm [GO:0005737]; preribosome, small subunit precursor [GO:0030688]; endoribonuclease activity [GO:0004521]; metal ion binding [GO:0046872]; cleavage involved in rRNA processing [GO:0000469]; embryo sac development [GO:0009553]; maturation of SSU-rRNA [GO:0030490]; pollen development [GO:0009555]; rRNA processing [GO:0006364] locus:2163071; AT5G41190 RNA-binding protein Os02g0114700 protein (Putative nin one binding protein) Q6Z7B7 Q6Z7B7_ORYSJ Os02g0114700 Os02g0114700 OJ1399_H05.39 OSNPB_020114700 P0036E06.18 ENOG411DRVH VCR,VCS Q9LTT9,Q9LTT8,A0A1I9LRS8 VCR_ARATH,VCS_ARATH,A0A1I9LRS8_ARATH Varicose-related protein,Enhancer of mRNA-decapping protein 4 (Protein VARICOSE),Transducin/WD40 repeat-like superfamily protein DISRUPTION PHENOTYPE: Lethal phenotype at the seedling cotyledon stage that are small and chlorotic, with disorganized veins, swollen root hairs, and altered epidermal cell morphology as well as leaf and shoot apical meristem defects. Altered RNA decay. These phenotypes are suppressed at low temperature. {ECO:0000269|PubMed:14660546, ECO:0000269|PubMed:17158604, ECO:0000269|PubMed:17513503}. The siliques of self-pollinated heterozygous plants were examined. Dissected siliques showed a full seed set indicating that the loss of VCR did not affect female gametophyte or embryo development.,No visible phenotype.,In the progeny of selfed heterozygous mutants the homozygous vcs-7 embryos were also clearly distinguished from their siblings based on their SAM morphology (seven vcs-7 embryos out of 25 embryos examined). These vcs-7 embryos contained small dense cells in the SAM region; however this region was not dome-shaped nor were the cells organized into distinct layers.,The transheterozygote was indistinguishable from vcs-1; it produced green organs a longer root and leaves that expanded to become broad and pointed.,29°C-grown vcs apices contained multiple clusters of small densely staining cells dispersed across the apical region and often in close proximity to leaf-like structures but no typical SAM.,Accumulates extra ectopic tracheary elements within their cotyledons and the upper hypocotyl.,Smaller than the wild type and produced narrow asymmetric leaves when grown at 22°C. All five mutant alleles showed identical phenotypic responses to growth temperature. When grown at 16°C vcs mutants resembled the wild-type controls except their leaves were pointed at the apex and prolonged growth revealed defects in apical dominance. By contrast growth at 29°C resulted in a strongly enhanced phenotype. These high temperature-grown mutants were chlorotic leaves were narrow and epinastic and prolonged growth resulted in a callus-like growth at the apex. vcs roots appeared similar to those of wild type except that at high temperature root hairs occasionally appeared swollen. vcs also produced decreased numbers of lateral roots.,The wild-type SAM was similar in size and organ phyllotaxy regardless of growth temperature. By contrast the vcs SAM was smaller than the wild type; this defect was most severe in the 29°C-grown vcs plants where the SAM appeared small and flat.,When grown at 22°C vcs-1 mutants were green had slightly longer roots and produced narrow pointed leaves.,Fork-like appearance of cotyledon secondary veins similar to that of vcs-7.,Null mutants of DCP1 DCP2 and VCS accumulate capped mRNAs with a reduced degradation rate. The homozygous progeny of these mutants also share a similar lethal phenotype at the seedling cotyledon stage with disorganized veins swollen root hairs and altered epidermal cell morphology.,Cotyledons of wild-type and vcs-1 plants contain a primary vein and four secondary veins that form between two and four closed loops whereas in vcs-7 the cotyledon secondary veins were mostly free-ending resulting in a fork-like appearance.,Growth of vcs-7 at 16°C resulted in only modest suppression of growth.,Mutants produced cotyledons that expanded slowly and accumulated anthocyanins around their margins hypocotyls that were short and slightly swollen and root hairs that were short and swollen. These traits were similar to those we reported previously for vcs-1 grown at 29°C. The vcs-7 mutant also showed cotyledon vein pattern defects.,The SAM of the vcs-7 3-d-old seedlings varied: some were modestly rounded and layered whereas others were more similar to the tdt embryonic SAM; however none had leaf primordia.,When grown at 22°C vcs-7 mutants had short roots small chlorotic cotyledons and typically failed to produce leaf primordia.,Appears similar to the single mutants. Dwarf; Narrow, asymmetric leaves; Sensitive to altered temperature-L. Sieburth-2003 FUNCTION: As a component of the decapping complex, may play a role in the degradation of mRNAs. {ECO:0000250}.,FUNCTION: As a component of the decapping complex, involved in the degradation of mRNAs. Essential for postembryonic development, especially during the formation of the shoot (SAM) and root apical meristems. Required for normal patterning of internal tissues of leaves. {ECO:0000269|PubMed:14660546, ECO:0000269|PubMed:17158604, ECO:0000269|PubMed:17513503}. R-ATH-430039; 145884,145720,133682 Varicose-related protein,Enhancer of mRNA-decapping protein 4 (Protein VARICOSE),Transducin/WD40 repeat-like superfamily protein P-body [GO:0000932]; protein homodimerization activity [GO:0042803]; deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; G-protein coupled receptor signaling pathway [GO:0007186]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397],cytosol [GO:0005829]; nucleus [GO:0005634]; P-body [GO:0000932]; mRNA binding [GO:0003729]; cellular response to auxin stimulus [GO:0071365]; deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; leaf morphogenesis [GO:0009965]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397]; post-embryonic development [GO:0009791]; primary shoot apical meristem specification [GO:0010072]; root meristem specification [GO:0010071] DEVELOPMENTAL STAGE: At early leaf developmental stages, expressed in a spot at the distal end of the organ. As leaf development progresses, present in procambium and differentiating vascular tissues. {ECO:0000269|PubMed:14660546}. TISSUE SPECIFICITY: Present in seedlings, roots, hypocotyls, cotyledons, leaves, stems, shoot apex, siliques and flowers. In leaves, particularly present in trichomes, some stomata and vascular tissues. {ECO:0000269|PubMed:14660546, ECO:0000269|PubMed:17158604}. locus:2088155;,locus:2088165; AT3G13290,AT3G13300 enhancer of mRNA-decapping protein Os06g0300800 protein (WD-40 repeat protein-like),Os02g0722800 protein (Transducin / WD-40 repeat protein-like),Os02g0722800 protein Q5ZA31,Q5ZA32,Q6Z5M6,A0A0P0VNW0 Q5ZA31_ORYSJ,Q5ZA32_ORYSJ,Q6Z5M6_ORYSJ,A0A0P0VNW0_ORYSJ P0501G08.38-2 Os06g0300800 OSNPB_060300800,P0501G08.38-1 Os06g0300800 OSNPB_060300800,Os02g0722800 Os02g0722800 OSNPB_020722800 P0654B04.36 P0685G12.5,Os02g0722800 OSNPB_020722800 ENOG411DRVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os02g0727300 protein (Fragment) A0A0P0VP99,A0A0P0VPF1,A0A0P0VP50 A0A0P0VP99_ORYSJ,A0A0P0VPF1_ORYSJ,A0A0P0VP50_ORYSJ Os02g0727300 OSNPB_020727300 ENOG411DRVJ PATL3,PATL5 Q56Z59,Q9M0R2,A0A1P8B4R9,A0A1P8B4T6 PATL3_ARATH,PATL5_ARATH,A0A1P8B4R9_ARATH,A0A1P8B4T6_ARATH Patellin-3,Patellin-5,SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein FUNCTION: Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites (By similarity). {ECO:0000250}. MISCELLANEOUS: 'Patella' means 'small plate' in Latin. 56105,75748,72882,72957 Patellin-3,Patellin-5,SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; cell cycle [GO:0007049]; cell division [GO:0051301]; transport [GO:0006810],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; cell cycle [GO:0007049]; cell division [GO:0051301]; transport [GO:0006810],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2207016;,locus:2141563; AT1G72160,AT4G09160 Carrier protein that may be involved in membrane- trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites (By similarity) Os05g0429400 protein (Putative cellular retinaldehyde-binding/triple function),Cytosolic factor-like protein (Os01g0874700 protein) (cDNA clone:J033015J08, full insert sequence) (p0648C09.9 protein),Cytosolic factor-like protein (Os01g0874700 protein) Q5TKJ2,Q8RYZ1,Q5N8X1 Q5TKJ2_ORYSJ,Q8RYZ1_ORYSJ,Q5N8X1_ORYSJ Os05g0429400 Os05g0429400 OSJNBb0048I21.5 OSNPB_050429400,P0648C09.9 P0698A10.10-1 Os01g0874700 OSNPB_010874700,P0698A10.10-2 Os01g0874700 OSNPB_010874700 ENOG411DRVK GUN1 Q9SIC9,A0A1P8B1Q9 PP178_ARATH,A0A1P8B1Q9_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic,S uncoupled 1 Defective in greening after a prolonged period of dark growth. Defective in coupling nuclear and plastidic gene expression and in establishing photoautotrophic growth.,Express nuclear-encoded Lhcb and RbcS transcripts in the absence of chloroplast development.,Accumulate the same levels of chlorophyll as gun4-1.,Strong enhancements of the gun phenotype: Lhcb1*2-GUS expression in the double mutants was ~fivefold higher than the single mutants and was about 11-17% of that observed in nonphotobleached wild-type plants. The endogenous Lhcb1 mRNA levels were also derepressed synergistically in the double mutants.,The homozygous progeny is albino.,Accumulate the same levels of chlorophyll as gun5-1. Seedling growth sensitive to ABA; Low anthocyanin levels in response to sucrose; Slightly slower seedling growth-J. Gray-2010 101624,93202 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic,S uncoupled 1 chloroplast [GO:0009507]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast-nucleus signaling pathway [GO:0010019]; mitochondria-nucleus signaling pathway [GO:0031930]; RNA modification [GO:0009451] locus:2061310; AT2G31400 Pentatricopeptide repeat-containing protein Os12g0562300 protein (Fragment) Q0IML9 Q0IML9_ORYSJ Os12g0562300 Os12g0562300 OSNPB_120562300 ENOG411DRVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411DRVE CLC-E Q8GX93,F4JN11 CLCE_ARATH,F4JN11_ARATH Chloride channel protein CLC-e (AtCLC-e) (CBS domain-containing protein CBSCLC3),Chloride channel protein Low nitrate content; Elevated nitrite content; Reduced nitrate influx in roots-G. Ephritikhine-2009 FUNCTION: Voltage-gated chloride channel. 75556,79696 Chloride channel protein CLC-e (AtCLC-e) (CBS domain-containing protein CBSCLC3),Chloride channel protein chloride channel complex [GO:0034707]; voltage-gated chloride channel activity [GO:0005247],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; voltage-gated chloride channel activity [GO:0005247] locus:2117602; AT4G35440 chloride channel Os01g0704700 protein C7IWJ0 C7IWJ0_ORYSJ Os01g0704700 Os01g0704700 OSNPB_010704700 ENOG411DRVF LHCB4.2,LHCB4.1,LHCB4.3 Q9XF88,Q07473,Q9S7W1,F4IGY6 CB4B_ARATH,CB4A_ARATH,CB4C_ARATH,F4IGY6_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic (LHCB4.2) (LHCII protein 4.2),Chlorophyll a-b binding protein CP29.1, chloroplastic (LHCB4.1) (LHCII protein 4.1),Chlorophyll a-b binding protein CP29.3, chloroplastic (LHCB4.3) (LHCII protein 4.3),Chlorophyll a-b binding protein, chloroplastic The mutant shows ABA insensitivity in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the mutant lose more water than those of the wild-type plants under dehydration condition; both young seedlings and mature plants of the mutant have lower capacity to conserve water during drought stress in comparison with wild-type plants. The ROS levels increase in the mutant in comparison with wild-type plants in both the whole leaves and in guard cells. Treatment with low concentrations of ABA reduces ROS levels in both whole leaves(1 to 10 uM ABA application) and in guard cells(5 uM ABA application) in the mutant plants. FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. MISCELLANEOUS: This protein is phosphorylated under normal plant growth conditions, whereas phosphorylation of maize CP29 was induced only by high light in the cold. 31194,31139,30212,20235 Chlorophyll a-b binding protein CP29.2, chloroplastic (LHCB4.2) (LHCII protein 4.2),Chlorophyll a-b binding protein CP29.1, chloroplastic (LHCB4.1) (LHCII protein 4.1),Chlorophyll a-b binding protein CP29.3, chloroplastic (LHCB4.3) (LHCII protein 4.3),Chlorophyll a-b binding protein, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to cytokinin [GO:0009735]; response to far red light [GO:0010218]; response to red light [GO:0010114],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; chlorophyll binding [GO:0016168]; photosynthesis, light harvesting [GO:0009765]; protein-chromophore linkage [GO:0018298] locus:2097608;,locus:2149765;,locus:2047751; AT3G08940,AT5G01530,AT2G40100 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic Q6Z411 Q6Z411_ORYSJ RCABP69 Os07g0558400 OSNPB_070558400 P0567H04.14 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DRVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain NA NA NA NA NA NA NA ENOG411DRVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA yellow stripe Iron-phytosiderophore transporter YSL15 (Protein YELLOW STRIPE LIKE 15) (OsYSL15),Os02g0650300 protein (Fragment) Q6H3Z3,C7IYA5 YSL15_ORYSJ,C7IYA5_ORYSJ YSL15 Os02g0650300 LOC_Os02g43410 OSJNBb0012J10.10-1 P0048B08.34-1,Os02g0650300 Os02g0650300 OSNPB_020650300 FUNCTION: Involved in Fe(3+) uptake from the rhizosphere and phloem transport of iron. Plays a important role in iron homeostasis during the early stages of growth. Transports Fe(3+)-phytosiderophore, but not Fe(3+)- or Fe(2+)-nicotianamine. May not transport other chelated metals. {ECO:0000269|PubMed:19049971}. ENOG411DRVB KIN14E,ZWI Q9FHN8,F4JXM5 KN14E_ARATH,F4JXM5_ARATH Kinesin-like protein KIN-14E (Kinesin-like calmodulin-binding protein) (Protein ZWICHEL),Kinesin-like calmodulin-binding protein (ZWICHEL) DISRUPTION PHENOTYPE: Trichomes with reduced branch number (PubMed:9177205, PubMed:25262228, PubMed:26287478). Impairment of trichomes branch tip sharpening due to disrupted transverse cortical F-actin cap (PubMed:26287478). {ECO:0000269|PubMed:25262228, ECO:0000269|PubMed:26287478, ECO:0000269|PubMed:9177205}. Predominantly produces unbranched trichomes.,Produces mostly two-branched trichomes.,Male sterile.,Produces a significant number of three-branched trichomes. However the branches may not always be of the correct size or shape and one or more of the branches might be twisted bent or shorter than their wild-type counterparts. The short stalk defect remains the same as in the zwi-3 single mutant.,Fails to suppress the zwi phenotype.,Trichomes not only have a reduced number of branches but also have a much shorter stalk.,Trichomes have a short-stalk phenotype.,Phenotype not described. Abnormal trichome morphology-D. Marks-1997 FUNCTION: Minus-end microtubule-dependent motor protein involved in the regulation of cell division and trichome morphogenesis through microtubules bundling. Possesses basal and microtubule-stimulated ATPase activities. Acts as a hub that brings together microtubules and actin filaments to modulate the cytoskeleton during trichome formation and morphogenesis (PubMed:26287478). Could be involved in the negative regulation of root growth (PubMed:25262228). {ECO:0000269|PubMed:10623599, ECO:0000269|PubMed:14688294, ECO:0000269|PubMed:17951708, ECO:0000269|PubMed:25262228, ECO:0000269|PubMed:26287478, ECO:0000269|PubMed:8636137, ECO:0000269|PubMed:8990207, ECO:0000269|PubMed:9177205, ECO:0000269|PubMed:9418053, ECO:0000269|PubMed:9634584, ECO:0000269|PubMed:9712269}. ARA:GQT-937-MONOMER; 143449,144090 Kinesin-like protein KIN-14E (Kinesin-like calmodulin-binding protein) (Protein ZWICHEL),Kinesin-like calmodulin-binding protein (ZWICHEL) cortical microtubule [GO:0055028]; cytoskeleton [GO:0005856]; kinesin complex [GO:0005871]; mitotic spindle [GO:0072686]; phragmoplast [GO:0009524]; actin filament binding [GO:0051015]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, minus-end-directed [GO:0008569]; ATPase activity [GO:0016887]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; microtubule binding [GO:0008017]; oxidoreductase activity [GO:0016491]; protein homodimerization activity [GO:0042803]; protein kinase binding [GO:0019901]; cortical microtubule organization [GO:0043622]; microtubule bundle formation [GO:0001578]; microtubule-based movement [GO:0007018]; trichome branching [GO:0010091]; trichome patterning [GO:0048629],cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; oxidoreductase activity [GO:0016491]; microtubule-based movement [GO:0007018]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Widely expressed with the highest levels in flowers (PubMed:8636137). Stongly expressed in the root tip (PubMed:25908862). Highly detected in the branch apex of the trichome (PubMed:26287478). {ECO:0000269|PubMed:25908862, ECO:0000269|PubMed:26287478, ECO:0000269|PubMed:8636137}. locus:2152059; AT5G65930 kinesin-like calmodulin-binding protein Kinesin-like protein KIN-14I (Kinesin-like calmodulin-binding protein) (OsKCBP),Kinesin-like protein (Fragment) Q7XPJ0,A0A0P0WG25 KN14I_ORYSJ,A0A0P0WG25_ORYSJ KIN14I KCBP Os04g0666900 LOC_Os04g57140 OsJ_16543 OSJNBa0087O24.20,Os04g0666900 OSNPB_040666900 FUNCTION: Minus-end microtubule-dependent motor protein involved in the regulation of cell division. {ECO:0000250|UniProtKB:Q9FHN8}. ENOG411DRVC F18N11.160 Q93ZD5,Q9M3D9 Q93ZD5_ARATH,Q9M3D9_ARATH At1g74680/F1M20_36 (Exostosin family protein) (Glycosyltransferase),Exostosin family protein (Glycosyltransferase) (Uncharacterized protein F18N11.160) 52659,54447 At1g74680/F1M20_36 (Exostosin family protein) (Glycosyltransferase),Exostosin family protein (Glycosyltransferase) (Uncharacterized protein F18N11.160) integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2019200;,locus:2078327; AT1G74680,AT3G45400 exostosin family domain containing protein expressed Os03g0324700 protein (Secondary cell wall-related glycosyltransferase family 47, putative, expressed) (cDNA clone:J033044K12, full insert sequence),Os11g0128000 protein (Secondary cell wall-related glycosyltransferase family 47, putative, expressed) (cDNA, clone: J100073C15, full insert sequence),Exostosin family-like protein (Os08g0438600 protein) (cDNA clone:001-204-H08, full insert sequence) (cDNA clone:J033040O12, full insert sequence),Os12g0124400 protein (Secondary cell wall-related glycosyltransferase family 47, putative, expressed) (cDNA clone:J023077I15, full insert sequence),Os02g0477401 protein Q10M35,Q2RB29,Q6Z527,Q2QYC6,C7IYP3 Q10M35_ORYSJ,Q2RB29_ORYSJ,Q6Z527_ORYSJ,Q2QYC6_ORYSJ,C7IYP3_ORYSJ LOC_Os03g20850 Os03g0324700 OSNPB_030324700,Os11g0128000 LOC_Os11g03410 OSNPB_110128000,Os08g0438600 Os08g0438600 OSJNBa0016C11.34 OSNPB_080438600 P0524F03.3,Os12g0124400 LOC_Os12g03100 Os12g0124400 OSNPB_120124400,Os02g0477401 Os02g0477401 OSNPB_020477401 ENOG411DRV8 ACR8 Q9LNA5,A0A1P8AQK2 ACR8_ARATH,A0A1P8AQK2_ARATH ACT domain-containing protein ACR8 (Protein ACT DOMAIN REPEATS 8),ACT domain repeat 8 FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 49961,41960 ACT domain-containing protein ACR8 (Protein ACT DOMAIN REPEATS 8),ACT domain repeat 8 amino acid binding [GO:0016597]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:12481063}. locus:2034630; AT1G12420 ACT domain Os08g0118100 protein (Putative ACT domain-containing protein),Os08g0515400 protein Q6ZJ53,A0A0P0XHW8 Q6ZJ53_ORYSJ,A0A0P0XHW8_ORYSJ Os08g0118100 Os08g0118100 OJ1005_B05.10 OSNPB_080118100 P0470F10.33,Os08g0515400 OSNPB_080515400 ENOG411DRV9 4MMP Q8GWW6 4MMP_ARATH Metalloendoproteinase 4-MMP (At4-MMP) (EC 3.4.24.-) (Matrix metalloproteinase 1) (AtMMP1) FUNCTION: Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). Active on myelin basic protein (MBP) and, to some extent, on McaPLGLDpaAR-NH(2) (QF24) and beta-casein (PubMed:24156403). {ECO:0000250|UniProtKB:O23507, ECO:0000269|PubMed:24156403}. R-ATH-1592389;R-ATH-6798695; 3.4.24.- 38506 Metalloendoproteinase 4-MMP (At4-MMP) (EC 3.4.24.-) (Matrix metalloproteinase 1) (AtMMP1) anchored component of membrane [GO:0031225]; extracellular matrix [GO:0031012]; plasma membrane [GO:0005886]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270] DEVELOPMENTAL STAGE: Starts to accumulate in 7-10 days old plant leaves. {ECO:0000269|Ref.1}. TISSUE SPECIFICITY: Mostly expressed in flowers and stems, and, to a lower extent, in leaves and roots. {ECO:0000269|PubMed:10574937}. locus:2055605; AT2G45040 Matrixin NA NA NA NA NA NA NA ENOG411DRV4 EMB3120 Q9LKB4 Q9LKB4_ARATH Uncharacterized protein At3g14900 Embryo defective; Transition-D. Meinke-2011 71221 Uncharacterized protein At3g14900 chloroplast [GO:0009507]; embryo development ending in seed dormancy [GO:0009793] locus:2086360; AT3G14900 NA OSJNBa0067K08.20 protein (Os04g0497900 protein) Q7XUK7 Q7XUK7_ORYSJ Os04g0497900 Os04g0497900 OSJNBa0067K08.20 OSNPB_040497900 ENOG411DRV5 WRKY11,WRKY17 Q9SV15,Q9SJA8,A0A1P8B8D0 WRK11_ARATH,WRK17_ARATH,A0A1P8B8D0_ARATH Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11),Probable WRKY transcription factor 17 (WRKY DNA-binding protein 17),WRKY DNA-binding protein 11 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 35805,35012,29162 Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11),Probable WRKY transcription factor 17 (WRKY DNA-binding protein 17),WRKY DNA-binding protein 11 nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. locus:2125239;,locus:2046653; AT4G31550,AT2G24570 WRKY transcription factor WRKY transcription factor WRKY51 (OsWRKY51),OSJNBb0015N08.8 protein (Os04g0605100 protein) (cDNA clone:006-212-C10, full insert sequence) (cDNA clone:J023149N23, full insert sequence) Q0JEE2,Q7XNY3 WRK51_ORYSJ,Q7XNY3_ORYSJ WRKY51 Os04g0287400 OsJ_14148 OSJNBa0065J03.18 OSNPB_040287400,Os04g0605100 Os04g0605100 OsJ_16065 OSJNBb0015N08.8 OSNPB_040605100 FUNCTION: Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}. ENOG411DRV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-type lectin S-receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DRV7 emb2734 Q93VS8 Q93VS8_ARATH ARM repeat superfamily protein (Uncharacterized protein At5g19820) Embryo defective; Cotyledon-D. Meinke-2003 123826 ARM repeat superfamily protein (Uncharacterized protein At5g19820) cell wall [GO:0005618]; cytosol [GO:0005829]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607]; protein import into nucleus, translocation [GO:0000060]; ribosomal protein import into nucleus [GO:0006610] locus:2183219; AT5G19820 HEAT repeat Os07g0575100 protein (Putative karyopherin-beta 3 variant),Os03g0701000 protein (Fragment),Os03g0701000 protein Q6ZL37,A0A0P0W1W2,A0A0P0W1W1 Q6ZL37_ORYSJ,A0A0P0W1W2_ORYSJ,A0A0P0W1W1_ORYSJ OJ1562_B11.122 Os07g0575100 OJ1699_E05.43 OSNPB_070575100,Os03g0701000 OSNPB_030701000 ENOG411DRV0 ALDH5F1 Q9SAK4 SSDH_ARATH Succinate-semialdehyde dehydrogenase, mitochondrial (At-SSADH1) (EC 1.2.1.24) (Aldehyde dehydrogenase family 5 member F1) (NAD(+)-dependent succinic semialdehyde dehydrogenase) DISRUPTION PHENOTYPE: Plants are sensitive to UVB and heat stress, and accumulate elevated levels of H(2)O(2). {ECO:0000269|PubMed:12740438}. Phenotypically dwarfed with necrotic lesions bleached leaves reduced leaf area lower chlorophyll content shorter hypocotyls and fewer flowers. Weaker phenotype compared to other ssadh alleles; inflorescences were 25-30% higher than those of ssadh-1.,Phenotypically dwarfed with necrotic lesions bleached leaves reduced leaf area lower chlorophyll content shorter hypocotyls and fewer flowers. Dwarf; Short hypocotyl; Necrotic lesions; Small, bleached leaves; Few flowers; Sensitive to high temperature and UV light-H. Fromm-2003 FUNCTION: Oxidizes specifically succinate semialdehyde. Involved in plant response to environmental stress by preventing the accumulation of reactive oxygen species. {ECO:0000269|PubMed:10517851, ECO:0000269|PubMed:12740438}. PATHWAY: Amino-acid degradation; 4-aminobutanoate degradation. ARA:AT1G79440-MONOMER; R-ATH-916853; 1.2.1.24; 1.2.1.24 56559 Succinate-semialdehyde dehydrogenase, mitochondrial (At-SSADH1) (EC 1.2.1.24) (Aldehyde dehydrogenase family 5 member F1) (NAD(+)-dependent succinic semialdehyde dehydrogenase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; NAD binding [GO:0051287]; succinate-semialdehyde dehydrogenase (NAD+) activity [GO:0004777]; succinate-semialdehyde dehydrogenase [NAD(P)+] activity [GO:0009013]; gamma-aminobutyric acid catabolic process [GO:0009450]; glutamate decarboxylation to succinate [GO:0006540]; reactive oxygen species metabolic process [GO:0072593]; response to heat [GO:0009408]; response to light stimulus [GO:0009416] locus:2206405; AT1G79440 Dehydrogenase Succinate-semialdehyde dehydrogenase, mitochondrial (EC 1.2.1.24) (Aldehyde dehydrogenase family 5 member F1) (NAD(+)-dependent succinic semialdehyde dehydrogenase),Os02g0173900 protein B9F3B6,A0A0P0VFG7 SSDH_ORYSJ,A0A0P0VFG7_ORYSJ ALDH5F1 SSADH1 Os02g0173900 LOC_Os02g07760 OsJ_05574,Os02g0173900 OSNPB_020173900 FUNCTION: Oxidizes specifically succinate semialdehyde. Involved in plant response to environmental stress by preventing the accumulation of reactive oxygen species (By similarity). {ECO:0000250}. ENOG411DRV1 LIP2 Q9SXP7 LIPB_ARATH Octanoyltransferase (EC 2.3.1.181) (Lipoate biosynthesis protein) (Lipoate-protein ligase) (Lipoyl ligase) (Lipoyl/octanoyl transferase) (Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase) FUNCTION: Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (Probable). {ECO:0000305|PubMed:11427685}. MISCELLANEOUS: In the reaction, the free carboxyl group of octanoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes. {ECO:0000250}. PATHWAY: Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 1/2. ARA:AT1G04640-MONOMER; R-ATH-389661; 2.3.1.181 26421 Octanoyltransferase (EC 2.3.1.181) (Lipoate biosynthesis protein) (Lipoate-protein ligase) (Lipoyl ligase) (Lipoyl/octanoyl transferase) (Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase) mitochondrion [GO:0005739]; lipoyl(octanoyl) transferase activity [GO:0033819]; octanoyltransferase activity [GO:0016415]; lipoate biosynthetic process [GO:0009107]; protein lipoylation [GO:0009249] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11427685}. locus:2197818; AT1G04640 Biotin/lipoate A/B protein ligase family Lipoate-protein ligase, putative, expressed (Os03g0321800 protein) (cDNA clone:002-183-B06, full insert sequence) (cDNA clone:006-206-E01, full insert sequence) Q10M64 Q10M64_ORYSJ Os03g0321800 LOC_Os03g20560 Os03g0321800 OSNPB_030321800 ENOG411DRV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M1 Aminopeptidase M1-B (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase),Aminopeptidase M1-C (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase),Aminopeptidase M1-D (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase),Os09g0362800 protein (cDNA clone:J013152F03, full insert sequence),Aminopeptidase (EC 3.4.11.-) (Fragment),Os09g0362800 protein (Fragment) Q0J5V5,Q0J2B5,Q6K4E7,B7EEY9,A0A0N7KQN4,A0A0P0XKN4 APM1B_ORYSJ,APM1C_ORYSJ,APM1D_ORYSJ,B7EEY9_ORYSJ,A0A0N7KQN4_ORYSJ,A0A0P0XKN4_ORYSJ Os08g0398700 LOC_Os08g30810 OJ1051_A08.7 OJ1198_B10.19,Os09g0362500 LOC_Os09g19790 OJ1506_A04.10,Os09g0362800 LOC_Os09g19800/LOC_Os09g19820 OJ1506_A04.11,Os09g0362800 OsJ_15502 OSNPB_090362800,Os09g0362500 OSNPB_090362500,Os09g0362800 OSNPB_090362800 ENOG411DRV3 AXR1,AXL1,AXL P42744,Q9ZV69,A0A1I9LPS6,A0A1P8B315,F4I7A3,F4I7A4,F4JBA2,F4ITQ5 AXR1_ARATH,AXL1_ARATH,A0A1I9LPS6_ARATH,A0A1P8B315_ARATH,F4I7A3_ARATH,F4I7A4_ARATH,F4JBA2_ARATH,F4ITQ5_ARATH NEDD8-activating enzyme E1 regulatory subunit AXR1 (Auxin-resistance protein AXR1) (Protein AUXIN-RESISTANT 1),NEDD8-activating enzyme E1 regulatory subunit AXL (Protein AXR1-LIKE) (Protein AXR1-LIKE 1),NAD(P)-binding Rossmann-fold superfamily protein,AXR1-like protein DISRUPTION PHENOTYPE: Impaired meiotic recombination characterized by a shortage in bivalent formation due to a mislocalisation of class I crossovers (COs) and correlated with strong synapsis defects. Dwarf plants, highly branched, with small crinkled leaves, small flowers and short fruits, symptoms of fertility defects. {ECO:0000269|PubMed:25116939}. Homozygous axr1-12 plants that are heterozygous for axl-1 display severe growth defects. These seedlings developed short slow growing roots compared with wild-type roots and were arrested at the late seedling stage.,Plants with the genotype AXL/axl-1 axr1-12/axr1-12 had a slight but consistent reduction in RUB-CUL1 levels.,The axr1-12/axr1-12 AXL/axl-1 line are nearly completely resistant to auxin a much more severe phenotype than for axr1-12 alone.,The columella of AXL/axl-1 axr1-12/axr1-12 root tips is highly disorganized during early seedling root growth and is completely disrupted at the time when root growth ceases.,Decrease in SCFTIR1 ligase activity.,Reduced RUB modification of CUL1.,Slight decrease in the number of columella columns in axr1-12 seedlings compared with wild type.,The mutant is resistant to auxin.,auxin resistant; irregular rosette leaves slightly curled around leaf axis; roots very auxin resistant; defective root gravitropism; reduced number of lateral roots; plant appearance similar to axr1-12 but more pronounced; dwarf bushy plants; reduced plant height; reduced fertility.,Leaf phenotypes are enhanced with respect to either single mutant with deeply lobed margins and ectopic stipules present in the sinus of each lobe.,Ectopic stipules observed in cauline leaves of as1;axr1 plants are not found. Leaves have an as1-like morphology.,Double homozygous mutant seedlings are completely deficient in RUB-modified CUL1.,Double homozygous progeny has severe growth and developmental defects. The phenotype of these plants resembled the bdl/iaa12 and mp/arf5 mutants. These seedlings did not segregate at the expected 1/16 ratio. Instead we identified three double mutant seedlings in 176 F2 plants suggesting the homozygous double mutants are arrested during embryogenesis.,In the double mutant progeny great reduction in vascular development.,The AXR1/axr1-12 axl-1/axl-1 plants were similar to wild type with respect to overall morphology and fertility.,The double homozygous progeny is seedling lethal.,Very strong embryo defects were observed in homozygous axl-1 plants segregating the axr1-12 mutation.,The triple mutant had an approximately additive phenotype. They were bushy and displayed the reduced fertility of axr1-12 plants.,Mutant has a normal level of RUB-CUL1 that is in keeping with the lack of any growth defect in these plants.,No defect in meristem organization.,No embryo defects were found. Dwarf; Increased branching; Abnormal root gravitropism, lateral root formation, and root hair growth; Reduced fertility; Insensitive to auxin-M. Estelle-1993 FUNCTION: Regulatory subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Plays an important role in auxin response (PubMed:8321287). Regulates the chromosomal localization of meiotic recombination by crossovers (COs) and subsequent synapsis, probably through the activation of a CRL4 complex (PubMed:25116939). Required for E3-mediated protein degradation in response to auxin, jasmonic acid and cold stress. Required for the COP1-COP10-CSN-mediated repression of photomorphogenesis in the dark (PubMed:12368504). May function redundantly with AXL1 in the RUB conjugating pathway (PubMed:17655650). Seems not to be functionally equivalent to AXL1 in vivo (PubMed:21311953). {ECO:0000269|PubMed:12368504, ECO:0000269|PubMed:17655650, ECO:0000269|PubMed:21311953, ECO:0000269|PubMed:25116939, ECO:0000269|PubMed:8321287}.,FUNCTION: Regulatory subunit of the dimeric ECR1-AXL1 E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1 (Probable). May function redundantly with AXR1 in the RUB conjugating pathway (PubMed:17655650). Seems not to be functionally equivalent to AXR1 in vivo (PubMed:21311953). {ECO:0000269|PubMed:17655650, ECO:0000269|PubMed:21311953, ECO:0000305|PubMed:21311953}. PATHWAY: Protein modification; protein neddylation.,PATHWAY: Protein modification; protein neddylation. {ECO:0000305}. R-ATH-8951664; 60035,57941,8310,45373,48994,47520,7614,46231 NEDD8-activating enzyme E1 regulatory subunit AXR1 (Auxin-resistance protein AXR1) (Protein AUXIN-RESISTANT 1),NEDD8-activating enzyme E1 regulatory subunit AXL (Protein AXR1-LIKE) (Protein AXR1-LIKE 1),NAD(P)-binding Rossmann-fold superfamily protein,AXR1-like protein cytosol [GO:0005829]; nucleus [GO:0005634]; NEDD8 activating enzyme activity [GO:0019781]; nucleotide binding [GO:0000166]; auxin homeostasis [GO:0010252]; auxin-activated signaling pathway [GO:0009734]; DNA repair [GO:0006281]; leaf morphogenesis [GO:0009965]; protein neddylation [GO:0045116]; reciprocal meiotic recombination [GO:0007131]; response to cytokinin [GO:0009735]; response to water deprivation [GO:0009414],nucleus [GO:0005634]; peroxisome [GO:0005777]; NEDD8 activating enzyme activity [GO:0019781]; nucleotide binding [GO:0000166]; auxin homeostasis [GO:0010252]; post-embryonic development [GO:0009791]; protein neddylation [GO:0045116],NEDD8 activating enzyme activity [GO:0019781]; protein neddylation [GO:0045116],cytoplasm [GO:0005737]; NEDD8 activating enzyme activity [GO:0019781]; protein neddylation [GO:0045116] DEVELOPMENTAL STAGE: Expressed during ovules and embryo development and very early during the formation of lateral roots. {ECO:0000269|PubMed:11884684}. TISSUE SPECIFICITY: Expressed in shoot, root and floral meristems, in vascular tissues of cotyledons and mature leaves, and in the stele of the root. Expressed at higher levels on the lower side of an emerging root during germination and at higher levels on the underside of the apical hook. {ECO:0000269|PubMed:11884684}. locus:2207220;,locus:2062571;,locus:2092095; AT1G05180,AT2G32410,AT3G25880 NEDD8-activating enzyme E1 regulatory NEDD8-activating enzyme E1 regulatory subunit Q84T99 Q84T99_ORYSJ OJ1754_E06.18 LOC_Os03g60550 Os03g0820100 OsJ_13135 OSNPB_030820100 FUNCTION: Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. {ECO:0000256|PIRNR:PIRNR039099}. ENOG411EEMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7G9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GNS1/SUR4 family NA NA NA NA NA NA NA ENOG411E7G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyt-b5 NA NA NA NA NA NA NA ENOG411E7G6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E7G0 A8MRN4 A8MRN4_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 29508 Tetratricopeptide repeat (TPR)-like superfamily protein locus:4010713851; AT3G63095 Inherit from euNOG: Protease inhibitor seed storage LTP family protein NA NA NA NA NA NA NA ENOG411E7GI Q9SJV6 Q9SJV6_ARATH AT2G01100 protein (At2g01100/F23H14.7) (Expressed protein) (FAM133-like protein) 29005 AT2G01100 protein (At2g01100/F23H14.7) (Expressed protein) (FAM133-like protein) locus:2045735; AT2G01100 NA NA NA NA NA NA NA NA ENOG411E7GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E7GJ Q4PT42,O22908,F4JC28 Q4PT42_ARATH,O22908_ARATH,F4JC28_ARATH Invertase (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein At2g47340),Plant invertase/pectin methylesterase inhibitor superfamily protein 26223,30037,27537 Invertase (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein At2g47340),Plant invertase/pectin methylesterase inhibitor superfamily protein cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2196130;,locus:2065119;,locus:504955581; AT1G02550,AT2G47340,AT3G36659 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E7GE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7GD MDF20.13 Q9FM69 Q9FM69_ARATH At5g55690 (MADS-box protein AGL47) (MADS-box transcription factor family protein) 31700 At5g55690 (MADS-box protein AGL47) (MADS-box transcription factor family protein) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2162137; AT5G55690 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E7GF Q9SHY3 Q9SHY3_ARATH At1g65720/F1E22_13 (F1E22.9) (Transmembrane protein) 20123 At1g65720/F1E22_13 (F1E22.9) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2018486; AT1G65720 NA Expressed protein (Os10g0483900 protein) Q8LNV2 Q8LNV2_ORYSJ LOC_Os10g34270 Os10g0483900 OSJNBa0012L23.34 OSNPB_100483900 ENOG411E7GA MUA22.11,F28J7.28 Q9FMT9,Q8LBX6,Q9S721 Q9FMT9_ARATH,Q8LBX6_ARATH,Q9S721_ARATH Peroxidase (DUF 3339),Transmembrane protein, putative (DUF 3339),At3g01950 (F1C9.27 protein) (F28J7.28 protein) (GPI-anchored protein) (Peroxidase (DUF 3339)) 7601,7744,7576 Peroxidase (DUF 3339),Transmembrane protein, putative (DUF 3339),At3g01950 (F1C9.27 protein) (F28J7.28 protein) (GPI-anchored protein) (Peroxidase (DUF 3339)) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; peroxidase activity [GO:0004601],integral component of membrane [GO:0016021] locus:2174663;,locus:4515103540;,locus:2078618; AT5G14110,AT5G08391,AT3G01950 Protein of unknown function (DUF3339) NA NA NA NA NA NA NA ENOG411E7GB Q3EDH7 Q3EDH7_ARATH Uncharacterized protein 21958 Uncharacterized protein locus:2202285; AT1G06320 NA Os03g0308600 protein (Fragment) A0A0P0VXF7 A0A0P0VXF7_ORYSJ Os03g0308600 OSNPB_030308600 ENOG411E7GY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0737100 protein (Fragment) A0A0P0V7Y2 A0A0P0V7Y2_ORYSJ Os01g0737100 OSNPB_010737100 ENOG411E7GU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0574200 protein Q84MU0 Q84MU0_ORYSJ Os03g0574200 LOC_Os03g37770 OsJ_11509 OSJNBa0029P07.10 OSNPB_030574200 ENOG411E7GT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7GW VQ11 Q9M8L3 VQ11_ARATH VQ motif-containing protein 11 (AtVQ11) (MPK3/6-targeted VQ-motif-containing protein 5) FUNCTION: May modulate WRKY transcription factor activities. {ECO:0000250|UniProtKB:Q9M9F0}. 19925 VQ motif-containing protein 11 (AtVQ11) (MPK3/6-targeted VQ-motif-containing protein 5) nucleus [GO:0005634] locus:2198943; AT1G80450 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411E7GS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E7GR MWD9.19 Q9FMR2 Q9FMR2_ARATH FANTASTIC four-like protein (DUF3049) (Uncharacterized protein At5g22390) (Uncharacterized protein At5g22390/MWD9_19) 23437 FANTASTIC four-like protein (DUF3049) (Uncharacterized protein At5g22390) (Uncharacterized protein At5g22390/MWD9_19) locus:2176382; AT5G22390 Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411E66N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0283900 protein Q0JEF2 Q0JEF2_ORYSJ Os04g0283900 Os04g0283900 OSNPB_040283900 ENOG411EKNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYB family transcription factor NA NA NA NA NA NA NA ENOG411EKNP Q9FIL9 Q9FIL9_ARATH Homeodomain-like transcriptional regulator (MYB transcription factor) (Putative I-box binding factor) (Similarity to Myb-related transcription factor) 31492 Homeodomain-like transcriptional regulator (MYB transcription factor) (Putative I-box binding factor) (Similarity to Myb-related transcription factor) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2154508; AT5G58900 MYB family transcription factor NA NA NA NA NA NA NA ENOG411EKNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os05g0449900 protein (cDNA clone:J013135D01, full insert sequence) Q60EH1 Q60EH1_ORYSJ Os05g0449900 B1122D01.8 OSNPB_050449900 ENOG411EKN8 RAD5A Q9FNI6 SM3L2_ARATH DNA repair protein RAD5A (EC 3.6.4.-) (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2) (SMARCA3-like protein 2) (RAD5 homolog A) (AtRAD5a) FUNCTION: Functions in error-free postreplication DNA repair or DNA-damage tolerance (DTT) pathway (PubMed:18310306, PubMed:21549648). Required for homologous recombination (HR) induced by DNA double-strand break (DSB) in somatic cells (PubMed:18310306). Required for damage-induced DNA repair, independently of MUS81 and RECQL4A. Plays a role in synthesis-dependent strand annealing (SDSA) but not in single-strand annealing (SSA) (PubMed:20971895). Possesses double-stranded DNA-dependent ATPase activity. Is able to regress replication forks with preference for forks with a leading strand gap. Is able to catalyze branch migration of Holliday junctions and is unaffected by protein blockades (PubMed:27458713). {ECO:0000269|PubMed:18310306, ECO:0000269|PubMed:20971895, ECO:0000269|PubMed:21549648, ECO:0000269|PubMed:27458713}. 3.6.4.- 114287 DNA repair protein RAD5A (EC 3.6.4.-) (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2) (SMARCA3-like protein 2) (RAD5 homolog A) (AtRAD5a) nucleus [GO:0005634]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; covalent chromatin modification [GO:0016569]; DNA mediated transformation [GO:0009294]; double-strand break repair via homologous recombination [GO:0000724]; double-strand break repair via synthesis-dependent strand annealing [GO:0045003] locus:2162504; AT5G22750 SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like Os02g0527100 protein (Putative DNA repair protein rad8) Q6H792 Q6H792_ORYSJ Os02g0527100 OSNPB_020527100 P0458B05.20 ENOG411EKN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EKN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EKN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EKN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CW-type Zinc Finger NA NA NA NA NA NA NA ENOG411E12B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411E12M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0883000 protein A0A0N7KE68 A0A0N7KE68_ORYSJ Os01g0883000 OSNPB_010883000 ENOG411E12K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q942C4 Q942C4_ORYSJ Os01g0734800 Os01g0734800 B1060H01.22 OsJ_03366 OSNPB_010734800 ENOG411E12R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA endoglucanase 8-like NA NA NA NA NA NA NA ENOG411EEH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411EEH3 Q9SAC5 Q9SAC5_ARATH At1g10770 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (T16B5.9) 18100 At1g10770 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (T16B5.9) cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; pollen tube growth [GO:0009860] locus:2019968; AT1G10770 invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EEH0 P93019 P93019_ARATH E6-like protein (Expressed protein) (Uncharacterized protein At2g33850) (Uncharacterized protein At2g33850; T1B8.15) 31351 E6-like protein (Expressed protein) (Uncharacterized protein At2g33850) (Uncharacterized protein At2g33850; T1B8.15) locus:2057619; AT2G33850 NA NA NA NA NA NA NA NA ENOG411EEH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EEH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411EEH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEH8 Q9M8Y9,Q0WNE5,A0A1I9LR55 Q9M8Y9_ARATH,Q0WNE5_ARATH,A0A1I9LR55_ARATH Kunitz family trypsin and protease inhibitor protein (Putative trypsin inhibitor),Kunitz family trypsin and protease inhibitor protein 22914,22932,25712 Kunitz family trypsin and protease inhibitor protein (Putative trypsin inhibitor),Kunitz family trypsin and protease inhibitor protein endopeptidase inhibitor activity [GO:0004866]; peptidase activity [GO:0008233] locus:2103070;,locus:2103080; AT3G04330,AT3G04320 inhibitor NA NA NA NA NA NA NA ENOG411EEHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family NA NA NA NA NA NA NA ENOG411EEHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411EEHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 47 NA NA NA NA NA NA NA ENOG411EEHW MSRB7,MSRB9,MSRB8 Q8VY86,Q84JT6,O49707 MSRB7_ARATH,MSRB9_ARATH,MSRB8_ARATH Peptide methionine sulfoxide reductase B7 (AtMSRB7) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B9 (AtMSRB9) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B8 (AtMSRB8) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase) FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer (By similarity). {ECO:0000250}. 1.8.4.12 15456,15412,15429 Peptide methionine sulfoxide reductase B7 (AtMSRB7) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B9 (AtMSRB9) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B8 (AtMSRB8) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase) cytosol [GO:0005829]; metal ion binding [GO:0046872]; peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; protein repair [GO:0030091]; response to singlet oxygen [GO:0000304],cytosol [GO:0005829]; metal ion binding [GO:0046872]; peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; protein repair [GO:0030091]; response to oxidative stress [GO:0006979] locus:2141667;,locus:2141692;,locus:2141677; AT4G21830,AT4G21850,AT4G21840 methionine sulfoxide reductase NA NA NA NA NA NA NA ENOG411EEHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive NA NA NA NA NA NA NA ENOG411EEHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EEHX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA st atst1 rar047 st1 st NA NA NA NA NA NA NA ENOG411EEHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA small_GTPase NA NA NA NA NA NA NA ENOG411EEHA HIPP42 Q9CAV5,Q1G3T0,F4JPD5 HIP42_ARATH,Q1G3T0_ARATH,F4JPD5_ARATH Heavy metal-associated isoprenylated plant protein 42 (AtHIP42),Heavy metal transport/detoxification superfamily protein FUNCTION: Probable heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 23043,27529,31930 Heavy metal-associated isoprenylated plant protein 42 (AtHIP42),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2114860;,locus:1009023122;,locus:1006230393; AT3G04900,AT1G30473,AT4G23882 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EEHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GHMP kinases N terminal domain NA NA NA NA NA NA NA ENOG411EEHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cid1 family poly A polymerase NA NA NA NA NA NA NA ENOG411EEHE CML40 Q9SGI8 CML40_ARATH Probable calcium-binding protein CML40 (Calmodulin-like protein 40) FUNCTION: Potential calcium sensor. {ECO:0000250}. 16769 Probable calcium-binding protein CML40 (Calmodulin-like protein 40) calcium ion binding [GO:0005509] locus:2082339; AT3G01830 Pfam:efhand NA NA NA NA NA NA NA ENOG411EEHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os04g0595000 protein (Os04g0596200 protein) (Fragment),Os08g0207800 protein Q0JAJ3,Q6ZJ90 Q0JAJ3_ORYSJ,Q6ZJ90_ORYSJ Os04g0596200 Os04g0595000 OSNPB_040596200,Os08g0207800 Os08g0207800 OJ1734_E04.14 OsJ_26419 OSNPB_080207800 ENOG411EEHI Q9LU98 Q9LU98_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (At3g25930) (Uncharacterized protein At3g25930) 17490 Adenine nucleotide alpha hydrolases-like superfamily protein (At3g25930) (Uncharacterized protein At3g25930) hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2092170; AT3G25930 Universal stress protein NA NA NA NA NA NA NA ENOG411EEHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3QA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E122 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E123 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411DWF0 Q84W91,Q6NPN3,Q9SQU4,A0A1P8BAP3,A0A1P8BAN4,A0A1P8BAQ5,A8MR17 C3H32_ARATH,C3H58_ARATH,C3H34_ARATH,A0A1P8BAP3_ARATH,A0A1P8BAN4_ARATH,A0A1P8BAQ5_ARATH,A8MR17_ARATH Zinc finger CCCH domain-containing protein 32 (AtC3H32) (Zinc finger CCCH domain-containing protein ZFN-like 1),Zinc finger CCCH domain-containing protein 58 (AtC3H58) (Zinc finger CCCH domain-containing protein ZFN-like 3),Zinc finger CCCH domain-containing protein 34 (AtC3H34) (Zinc finger CCCH domain-containing protein ZFN-like 2),Zinc finger C-x8-C-x5-C-x3-H type family protein 50040,49464,48852,48487,48120,46054,47053 Zinc finger CCCH domain-containing protein 32 (AtC3H32) (Zinc finger CCCH domain-containing protein ZFN-like 1),Zinc finger CCCH domain-containing protein 58 (AtC3H58) (Zinc finger CCCH domain-containing protein ZFN-like 3),Zinc finger CCCH domain-containing protein 34 (AtC3H34) (Zinc finger CCCH domain-containing protein ZFN-like 2),Zinc finger C-x8-C-x5-C-x3-H type family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729],metal ion binding [GO:0046872] locus:2043368;,locus:2182988;,locus:2081066; AT2G47850,AT5G18550,AT3G06410 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 5 (OsC3H5) (Zinc finger CCCH domain-containing protein ZFN-like 3) Q5NAV3 C3H5_ORYSJ Os01g0257400 LOC_Os01g15350 P0462H08.6 ENOG411DWFE LKR/SDH,LKR Q9SMZ4,F4JVY8 AASS_ARATH,F4JVY8_ARATH Alpha-aminoadipic semialdehyde synthase (cAt-LKR/SDH) (LKR/SDH) [Includes: Lysine ketoglutarate reductase (LKR) (EC 1.5.1.8); Saccharopine dehydrogenase (EC 1.5.1.9) (cAt-SDH) (SDH)],Lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme FUNCTION: Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-oxoglutarate reductase and saccharopine dehydrogenase activity, respectively. Negatively regulates free Lys accumulation in seeds. {ECO:0000269|PubMed:11500552, ECO:0000269|PubMed:9286108, ECO:0000269|PubMed:9426595}. PATHWAY: Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 1/6.; PATHWAY: Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 2/6. ARA:AT4G33150-MONOMER; R-ATH-71064; 1.5.1.8; 1.5.1.9 117149,117158 Alpha-aminoadipic semialdehyde synthase (cAt-LKR/SDH) (LKR/SDH) [Includes: Lysine ketoglutarate reductase (LKR) (EC 1.5.1.8); Saccharopine dehydrogenase (EC 1.5.1.9) (cAt-SDH) (SDH)],Lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme cytoplasm [GO:0005737]; saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity [GO:0047131]; saccharopine dehydrogenase (NADP+, L-lysine-forming) activity [GO:0047130]; saccharopine dehydrogenase activity [GO:0004753]; generation of precursor metabolites and energy [GO:0006091]; L-lysine catabolic process to acetyl-CoA via saccharopine [GO:0033512]; lysine biosynthetic process via aminoadipic acid [GO:0019878],cytoplasm [GO:0005737]; cytosol [GO:0005829]; saccharopine dehydrogenase (NADP+, L-lysine-forming) activity [GO:0047130]; saccharopine dehydrogenase activity [GO:0004753]; L-lysine catabolic process [GO:0019477]; response to karrikin [GO:0080167] DEVELOPMENTAL STAGE: In flowers, confined to ovules and vascular tissue of anther filament. In developing and mature seeds, expressed in embryo and the outer layers of the endosperm. {ECO:0000269|PubMed:9286108}. TISSUE SPECIFICITY: Ubiquitous, with higher levels in flowers. Isoform Long is mostly present in young leaves, cotyledons, root tips and mature root parts. Whereas isoform Short is mostly expressed in cotyledons and at low levels in all root parts. {ECO:0000269|PubMed:15569707, ECO:0000269|PubMed:9286108}. locus:2125964; AT4G33150 reductase saccharopine dehydrogenase Os02g0783700 protein (Fragment),Os02g0783625 protein A0A0P0VQK9,A0A0P0VQF9 A0A0P0VQK9_ORYSJ,A0A0P0VQF9_ORYSJ Os02g0783700 OSNPB_020783700,Os02g0783625 OSNPB_020783625 ENOG411DWFG MUP24.2 Q9FF49,F4JE24,F4JE23,A0A1I9LN98,F4JE22,F4IU12,A0A1I9LN99 Q9FF49_ARATH,F4JE24_ARATH,F4JE23_ARATH,A0A1I9LN98_ARATH,F4JE22_ARATH,F4IU12_ARATH,A0A1I9LN99_ARATH Retroelement pol polyprotein-like (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein 76422,70162,74714,75954,70290,76351,75826 Retroelement pol polyprotein-like (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein plasma membrane [GO:0005886] locus:2175796;,locus:2102445;,locus:2064945; AT5G60710,AT3G54780,AT2G38970 zinc finger Os02g0806700 protein (Zinc finger-like) (cDNA clone:J013130C12, full insert sequence),Os06g0153400 protein,Os06g0153300 protein Q6K8E9,A0A0P0WT04,A0A0P0WT03 Q6K8E9_ORYSJ,A0A0P0WT04_ORYSJ,A0A0P0WT03_ORYSJ Os02g0806700 Os02g0806700 OJ1111_C07.20 OSNPB_020806700,Os06g0153400 OSNPB_060153400,Os06g0153300 OSNPB_060153300 ENOG411DWFA Q9LFQ8 Q9LFQ8_ARATH At4g33110 (Seed maturation-like protein) 39570 At4g33110 (Seed maturation-like protein) locus:2147875; AT5G14970 NA NA NA NA NA NA NA NA ENOG411E3HR RBE Q9LHS9 RBE_ARATH Probable transcriptional regulator RABBIT EARS Altered petal morphology. A wild-type flower has four petals of almost the same size and shape. A petal is flat from top to bottom and the bottom part is narrow and greenish. In rbe-1 petals were deformed and their degree of morphological abnormality varied from a mild phenotype of a reduced blade at the top an intermediate phenotype of spoon-shaped petals with a small blade and a short filamentous stalk at the base to a severe phenotype of filaments only. In some cases no petals or filaments were observed at the position of petal formation.,The epidermal cells on the lower surface of the filaments of rbe-1 had an irregular ridged structure similar to that of the lower surface of the wild type but the cells were flattened and elliptic. The position of the filamentous petals was normal; that is they were formed in the second whorl at a position between the medial and lateral sepals. Furthermore in the small or spoon-shaped petals of rbe-1 the epidermal cells had a ridged structure and were smaller . This suggests that the position and identity of the aberrant-shaped petals of rbe was not altered.,Defective in petal development; petals are transformed to filamentous organs or lost; ovules have shorter integuments than those of wild type producing shorter siliques; reduced fertility; strong allele.,Defective in sepal petal and ovule development; flowers sometimes produce more than four sepals and exhibit fusion between adjacent sepals; petals are often reduced in size or altered in appearance petals often absent or replaced by staminoid organs and filaments; altered integument growth in ovules; reduced fertility.,During stage 3 of flower development four sepal primordia are initiated in normal positions in rbe-3 mutants. However early in stage 4 some rbe-3 sepal primordia have undergone extra growth along their margins and appear wider than normal. The tips of these primordia were sometimes not located in the middle of the primordia and the two sides of the primordia were not symmetrical. Continued uneven growth of these primordia became more pronounced during development. By stage 5 an organ that had presumably initiated as a single primordium now appeared as two fused primordia or two closely spaced and partially fused primordia.,In rbe-3 flowers second-whorl petals are often reduced in size or altered in appearance. Petals with staminoid characteristics stamens filaments or the absence of organs can all be found in the second whorl of rbe-3 mutants.,Mutant flowers sometimes produce more than four sepals and exhibit fusion between adjacent sepals. More than four sepals were observed in approximately 7% of rbe-3 flowers while some degree of sepal fusion was observed in 35% of flowers (corresponding to 10% of all sepals). In rbe-3 flowers with more than four sepals the extra sepal was thinner than the remaining four sepals. In some cases one of the adjacent sepals was also somewhat reduced in width. Sepal fusion can occur in the absence of more than four sepals. Sepal fusion was observed most often at the base of these organs and more rarely along their entire length. We measured the width of mature sepals to determine whether sepal fusion might be due to wider organs. rbe-3 sepals were 12% wider than Landsberg erecta (Ler) sepals at maturity.,Same phenotype as ag-1 single mutants with completely normal petals developing in the second whorl. In addition sepal number was normal in these flowers and no cases of sepal fusion were observed.,Double mutants had an increased number of sepals compared with either single mutant. In early arising flowers as many as eight sepals were present. In addition fusion between sepals was observed in ant-4 rbe-3 mutants. Sepals in the double mutant were often fused along their entire length rather than just at their base as usually seen in rbe-3.,Mutant flowers also show a reduction in the overall number of second-whorl organs. In addition fewer filaments and staminoid organs were present in the double mutant compared with rbe-3 single mutants. Reduced stamen number in the third whorl of ant-4 mutants was partially rescued by rbe-3.,Additive phenotype in the first and fourth whorls. Second-whorl organs of the double mutant were more completely converted to stamens or were missing entirely.,The enhancement of the second-whorl phenotypes in these double mutants resulted from AG misexpression.,In the double mutants first-whorl carpels and staminoid carpels were often wider than in ap2-2. These organs had the appearance of several fused organs but were only connected to the base of the flower in the central part of the organ and were in a position normally occupied by a single organ. In addition first-whorl organs were often fused along much of their length. All of the first-whorl organs were sometimes fused such that the fourth whorl carpel poked through a ring of tissue. Cells present along the margin of fusion resembled the epidermal cells normally present on the abaxial replum of wild-type carpels.,The number of first whorl organs in the double mutant was slightly increased compared with ap2-2 single mutants. No second-whorl organs were present in the double mutant and the third and fourth whorls had an additive phenotype.,leaf curling similar to that in clf-2. Both clf-2 and clf-2 rbe-3 produced an average of 4.0 second-whorl organs per flower. In clf-2 mutants these were almost exclusively small petals whereas the average number of small petals in clf-2 rbe-3 was 1.37. Second-whorl petals were most often replaced by spoonshaped petals staminoid petals petaloid stamens or stamens.,Four distinct sepal primordia are initiated in a normal pattern during stage 3 of flower development as was seen previously for cuc2-1 and rbe-3 single mutants. Later growth of sepal primordia in the cuc2-1 rbe-3 double is uneven similar to that seen in rbe-3 single mutants. An increased extent of sepal fusion in the cuc2-1 rbe-3 double mutant as compared with cuc2-1 was first observed during stage 6.,In double mutant flowers sepal fusion occurred more often and to a greater extent than in either single mutant.,Additive phenotype. The number of second-whorl organs was reduced in lug-1 rbe-3 double mutants and these remaining organs were primarily staminoid. Thus rbe-3 enhanced the second-whorl phenotype of lug-1 mutants. The double mutant rarely produced any seeds suggesting a more severe defect in female fertility in the double mutant compared with either single mutant. However no enhancement of the outer integument growth defect was observed.,Double-mutant flowers have a phenotype that is similar to ufo-11 flowers.,Double mutant has the same phenotype as the ufo-2 single mutant. There is no increase in the number of filaments and/or staminoid organs in the double mutant as compared with ufo-2. Abnormal petal morphology-K. Okada-2004 FUNCTION: Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}. 25338 Probable transcriptional regulator RABBIT EARS nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; petal development [GO:0048441]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Not expressed in the inflorescence meristem or in the flowers at stages 1 and 2. First expressed in the precursor cells of petal primordia in stage 3 flowers and in the developing petal primordia up to stage 6. Not expressed at later stages. {ECO:0000269|PubMed:14681191}. TISSUE SPECIFICITY: Strongly expressed in inflorescences and flowers, and weakly in siliques, seedlings and roots. In flowers, it is expressed in petal primordia and their precursor cells. Also expressed in the lateral root caps and the basal cells of lateral roots. {ECO:0000269|PubMed:14681191}. locus:505006582; AT5G06070 transcriptional regulator RABBIT EARS Os05g0286100 protein (cDNA clone:002-151-G02, full insert sequence) Q0DJG4 Q0DJG4_ORYSJ Os05g0286100 Os05g0286100 OSNPB_050286100 ENOG411E3HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromosome segregation protein Spc25 NA NA NA NA NA NA NA ENOG411E3HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0820900 protein A0A0P0V9R5 A0A0P0V9R5_ORYSJ Os01g0820900 OSNPB_010820900 ENOG411E9MV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1664) Os05g0103700 protein (cDNA clone:J013029F11, full insert sequence),Os01g0112300 protein Q75M27,A0A0P0UXD7 Q75M27_ORYSJ,A0A0P0UXD7_ORYSJ Os05g0103700 OSNPB_050103700 P0668H12.10,Os01g0112300 OSNPB_010112300 ENOG411E9MB PP2A15 Q9LF92 P2A15_ARATH F-box protein PP2-A15 (Protein PHLOEM PROTEIN 2-LIKE A15) (AtPP2-A15) 34197 F-box protein PP2-A15 (Protein PHLOEM PROTEIN 2-LIKE A15) (AtPP2-A15) carbohydrate binding [GO:0030246] locus:2085236; AT3G53000 FBOX NA NA NA NA NA NA NA ENOG411E9M4 Q9FKB9,Q9M0Q5,A0A1P8ASP5,A0A1P8B723,A0A1P8AT27,A0A1P8AT23,A0A1P8B716,F4IF00 Q9FKB9_ARATH,Q9M0Q5_ARATH,A0A1P8ASP5_ARATH,A0A1P8B723_ARATH,A0A1P8AT27_ARATH,A0A1P8AT23_ARATH,A0A1P8B716_ARATH,F4IF00_ARATH Disease resistance protein (Disease resistance protein (TIR-NBS-LRR class) family),NB-ARC domain-containing disease resistance protein (Uncharacterized protein AT4g09360),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) family protein,Disease resistance protein (TIR-NBS-LRR class) family 135264,96663,115182,54057,148748,128899,53402,132529 Disease resistance protein (Disease resistance protein (TIR-NBS-LRR class) family),NB-ARC domain-containing disease resistance protein (Uncharacterized protein AT4g09360),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) family protein,Disease resistance protein (TIR-NBS-LRR class) family cytosol [GO:0005829]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952],ADP binding [GO:0043531],ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2156579;,locus:2133662;,locus:2032602; AT5G48770,AT4G09360,AT1G72860 NB-ARC domain NA NA NA NA NA NA NA ENOG411E3Q5 SRP19 Q943Z6 SRP19_ARATH Signal recognition particle 19 kDa protein (SRP19) FUNCTION: Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. {ECO:0000250}. R-ATH-1799339; 16274 Signal recognition particle 19 kDa protein (SRP19) signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [GO:0006617]; SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616] locus:2020895; AT1G48160 Signal recognition particle 19 kDa Signal recognition particle 19 kDa protein (SRP19) P49964 SRP19_ORYSJ SRP19 Os06g0342100 LOC_Os06g23430 P0428A03.35 P0459H02.12 FUNCTION: Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. {ECO:0000250}. ENOG411E9M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: repeat-containing protein NA NA NA NA NA NA NA ENOG411E3HI F4KHA1 F4KHA1_ARATH HAT dimerization domain-containing protein / transposase-like protein 58184 HAT dimerization domain-containing protein / transposase-like protein nucleic acid binding [GO:0003676]; protein dimerization activity [GO:0046983] locus:504955161; AT5G33406 Pfam:hATC NA NA NA NA NA NA NA ENOG411DZXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Converts alpha-aldose to the beta-anomer. It is active on D-glucose L-arabinose D-xylose D-galactose maltose and lactose (By similarity) NA NA NA NA NA NA NA ENOG411DZXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MBOAT membrane-bound O-acyltransferase family OSJNBb0011N17.14 protein (Os04g0481800 protein) (cDNA clone:002-155-F11, full insert sequence),OSJNBb0011N17.15 protein (Os04g0481900 protein) Q7XT56,Q7XUP8 Q7XT56_ORYSJ,Q7XUP8_ORYSJ Os04g0481800 Os04g0481800 OSJNBb0011N17.14 OSNPB_040481800,Os04g0481900 OsJ_15219 OSJNBb0011N17.15 OSNPB_040481900 ENOG411DZXF O82388,Q8VZC8,A0A1P8AMQ5 O82388_ARATH,Q8VZC8_ARATH,A0A1P8AMQ5_ARATH At2g29670/T27A16.23 (Expressed protein) (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At2g29670),At1g07280/F22G5_32 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein 60324,61784,55346 At2g29670/T27A16.23 (Expressed protein) (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At2g29670),At1g07280/F22G5_32 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein RNA processing [GO:0006396] locus:2060669;,locus:2025067; AT2G29670,AT1G07280 expressed protein Os05g0447700 protein (cDNA clone:J013129M13, full insert sequence) (cDNA clone:J023089C14, full insert sequence),Os01g0855200 protein (Peroxidase-like protein),Os08g0382600 protein (Fragment) Q688J0,Q5N7T3,A0A0P0XF94 Q688J0_ORYSJ,Q5N7T3_ORYSJ,A0A0P0XF94_ORYSJ Os05g0447700 OsJ_18732 OSJNBb0012G21.7 OSNPB_050447700,Os01g0855200 Os01g0855200 B1096A10.34 OSNPB_010855200,Os08g0382600 OSNPB_080382600 ENOG411DZXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin transporter-like protein Auxin transporter-like protein 3,AUX1 protein, putative, expressed (Os03g0244600 protein) (cDNA clone:J033131K12, full insert sequence),Os03g0244600 protein (Fragment),Os10g0147400 protein (Fragment) Q7XGU4,Q10P71,A0A0P0VVC5,A0A0P0XSD5 LAX13_ORYSJ,Q10P71_ORYSJ,A0A0P0VVC5_ORYSJ,A0A0P0XSD5_ORYSJ Os10g0147400 LOC_Os10g05690 OsJ_30723 OSJNBb0016M10.2,Os03g0244600 LOC_Os03g14080 Os03g0244600 OSNPB_030244600,Os03g0244600 OSNPB_030244600,Os10g0147400 OSNPB_100147400 FUNCTION: Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity). {ECO:0000250}. ENOG411DZXW PCMP-E58 Q9LP03 PPR73_ARATH Pentatricopeptide repeat-containing protein At1g43980, mitochondrial 71460 Pentatricopeptide repeat-containing protein At1g43980, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT1G43980 Pentatricopeptide repeat-containing protein Os03g0435200 protein (Os11g0357094 protein) A0A0P0Y1F0 A0A0P0Y1F0_ORYSJ Os11g0357094 Os03g0435200 OSNPB_030435200 OSNPB_110357094 ENOG411DZXU MSD1 O81235,F4J504 SODM1_ARATH,F4J504_ARATH Superoxide dismutase [Mn] 1, mitochondrial (EC 1.15.1.1) (Protein MANGANESE SUPEROXIDE DISMUTASE 1) (AtMSD1) (Protein MATERNAL EFFECT EMBRYO ARREST 33),Superoxide dismutase (EC 1.15.1.1) FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.,FUNCTION: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. {ECO:0000256|RuleBase:RU000414}. R-ATH-3299685; 1.15.1.1 25444,25345 Superoxide dismutase [Mn] 1, mitochondrial (EC 1.15.1.1) (Protein MANGANESE SUPEROXIDE DISMUTASE 1) (AtMSD1) (Protein MATERNAL EFFECT EMBRYO ARREST 33),Superoxide dismutase (EC 1.15.1.1) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; metal ion binding [GO:0046872]; superoxide dismutase activity [GO:0004784]; defense response to bacterium [GO:0042742]; embryo development ending in seed dormancy [GO:0009793]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043],metal ion binding [GO:0046872]; superoxide dismutase activity [GO:0004784] locus:2085552; AT3G10920 Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) Superoxide dismutase [Mn], mitochondrial (EC 1.15.1.1) Q43008 SODM_ORYSJ SODA RMSOD1 SODAOS1 Os05g0323900 LOC_Os05g25850 OsJ_18067 P0018A03 FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. ENOG411DTTT COG4 Q8L838 COG4_ARATH Conserved oligomeric Golgi complex subunit 4 (COG complex subunit 4) (Component of oligomeric Golgi complex 4) FUNCTION: Required for normal Golgi function. {ECO:0000250}. R-ATH-6807878;R-ATH-6811438; 82978 Conserved oligomeric Golgi complex subunit 4 (COG complex subunit 4) (Component of oligomeric Golgi complex 4) Golgi membrane [GO:0000139]; Golgi transport complex [GO:0017119]; Golgi organization [GO:0007030]; Golgi vesicle prefusion complex stabilization [GO:0048213]; protein transport [GO:0015031]; retrograde transport, vesicle recycling within Golgi [GO:0000301]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] AT4G01395 oligomeric golgi complex Os02g0456000 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6K3A8 Q6K3A8_ORYSJ Os02g0456000 Os02g0456000 OSJNBa0008C07.39 OSJNBa0063K04.15 OSNPB_020456000 ENOG411DZX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os04g0603200 protein,Os04g0603200 protein (Fragment) Q0JAE4,A0A0P0WEE2 Q0JAE4_ORYSJ,A0A0P0WEE2_ORYSJ Os04g0603200 Os04g0603200 OSNPB_040603200,Os04g0603200 OSNPB_040603200 ENOG411DZX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hexokinase Hexokinase-7 (EC 2.7.1.1) (Hexokinase-6),Hexokinase-1 (EC 2.7.1.1),Phosphotransferase (EC 2.7.1.-) Q1WM16,Q8LH82,Q0DK74 HXK7_ORYSJ,HXK1_ORYSJ,Q0DK74_ORYSJ HXK7 HXK6 Os05g0187100 LOC_Os05g09500 OJ1097_A12.3,HXK1 Os07g0446800 LOC_Os07g26540 P0030H06.133 P0475E07.113,Os05g0187100 Os05g0187100 OSNPB_050187100 FUNCTION: Fructose and glucose phosphorylating enzyme. {ECO:0000269|PubMed:16552590}. ENOG411EFI9 Q9SV74 Q9SV74_ARATH Fasciclin-like arabinogalactan family protein (Uncharacterized protein AT4g12950) 19614 Fasciclin-like arabinogalactan family protein (Uncharacterized protein AT4g12950) anchored component of membrane [GO:0031225] locus:2123241; AT4G12950 FAS1 NA NA NA NA NA NA NA ENOG411EFI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0500400 protein A0A0P0YAB3 A0A0P0YAB3_ORYSJ Os12g0500400 OSNPB_120500400 ENOG411E9WP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411DXC9 XTH10 Q9ZVK1,A0A1P8B1L1,A0A1P8B1J8 XTH10_ARATH,A0A1P8B1L1_ARATH,A0A1P8B1J8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 10 (At-XTH10) (XTH-10) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ARA:AT2G14620-MONOMER; 2.4.1.207 34687,29202,28066 Probable xyloglucan endotransglucosylase/hydrolase protein 10 (At-XTH10) (XTH-10) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] locus:2064284; AT2G14620 Xyloglucan endotransglucosylase hydrolase protein NA NA NA NA NA NA NA ENOG411DXC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxypeptidase Taq (M32) metallopeptidase NA NA NA NA NA NA NA ENOG411DXC1 URH2 Q8LAC4 URH2_ARATH Probable uridine nucleosidase 2 (EC 3.2.2.3) (Uridine ribohydrolase 2) FUNCTION: Involved in pyrimidine breakdown. {ECO:0000250}. 3.2.2.3 34668 Probable uridine nucleosidase 2 (EC 3.2.2.3) (Uridine ribohydrolase 2) cytosol [GO:0005829]; inosine nucleosidase activity [GO:0047724]; UDP-glucosyltransferase activity [GO:0035251]; uridine nucleosidase activity [GO:0045437]; inosine catabolic process [GO:0006148]; leaf senescence [GO:0010150] locus:2032008; AT1G05620 Inosine-uridine preferring nucleoside hydrolase family protein Inosine-uridine preferring nucleoside hydrolase family protein, expressed (Os03g0425200 protein) (Putative inosine-uridine preferring nucleoside hydrolase) Q84MH2 Q84MH2_ORYSJ LOC_Os03g31170 Os03g0425200 Os03g31170 OsJ_11337 OSNPB_030425200 ENOG411DXC0 LIP1 Q71DJ5 LIP1_ARATH Triacylglycerol lipase 1 (EC 3.1.1.3) FUNCTION: Triacylglycerol (TAG) lipase active on triolein, trioctanoin, tributyrin and 1,3-Diolein, but not on phospho- and galactolipids. May be involved but dispensable for TAG storage breakdown during seed germination. {ECO:0000269|PubMed:16226259}. ARA:AT2G15230-MONOMER; R-ATH-6809371; 3.1.1.3; 3.1.1.3 44231 Triacylglycerol lipase 1 (EC 3.1.1.3) extracellular space [GO:0005615]; triglyceride lipase activity [GO:0004806]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:16226259}. locus:2041834; AT2G15230 Triacylglycerol lipase Lipase B9G225 B9G225_ORYSJ Os09g0103100 OsJ_28340 OSNPB_090103100 ENOG411DXC3 BGLU17 O64882,A0A1P8B0J0,A0A1P8B0I8,A0A1P8B0I9 BGL17_ARATH,A0A1P8B0J0_ARATH,A0A1P8B0I8_ARATH,A0A1P8B0I9_ARATH Beta-glucosidase 17 (AtBGLU17) (EC 3.2.1.21),Beta glucosidase 17 ARA:AT2G44480-MONOMER; R-ATH-189085; 3.2.1.21 59121,45199,35753,62717 Beta-glucosidase 17 (AtBGLU17) (EC 3.2.1.21),Beta glucosidase 17 beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2050512; AT2G44480 beta-glucosidase Beta-glucosidase 24 (Os6bglu24) (EC 3.2.1.21),Beta-glucosidase 10 (Os4bglu10) (EC 3.2.1.21),Putative beta-glucosidase 9 (Os4bglu9) (EC 3.2.1.21),Beta-glucosidase 11 (Os4bglu11) (EC 3.2.1.21),Os04g0474300 protein,Os06g0320200 protein,Os04g0474800 protein,Os04g0474700 protein,Os04g0474500 protein Q5Z9Z0,Q7F9K4,B7ECS8,Q7XKV5,C7J0Y8,A0A0P0WVX1,A0A0P0WBJ3,A0A0N7KJ80,A0A0P0WBU4 BGL24_ORYSJ,BGL10_ORYSJ,BGL09_ORYSJ,BGL11_ORYSJ,C7J0Y8_ORYSJ,A0A0P0WVX1_ORYSJ,A0A0P0WBJ3_ORYSJ,A0A0N7KJ80_ORYSJ,A0A0P0WBU4_ORYSJ BGLU24 Os06g0320200 LOC_Os06g21570 OsJ_21154 P0592B08.35,BGLU10 Os04g0474500 LOC_Os04g39840 OsJ_17051 OSJNBa0022H21.1,BGLU9 Os04g0474300 LOC_Os04g39814,BGLU11 Os04g0474700 Os04g0474600 LOC_Os04g39864 OSJNBa0022H21.2,Os04g0474300 Os04g0474300 OSNPB_040474300,Os06g0320200 OSNPB_060320200,Os04g0474800 OSNPB_040474800,Os04g0474700 OSNPB_040474700,Os04g0474500 OSNPB_040474500 ENOG411DXC2 CRN Q9LYU7 CRN_ARATH Inactive leucine-rich repeat receptor-like protein kinase CORYNE (Protein SUPPRESSOR OF OVEREXPRESSION OF LLP1 2) Increased meristem size. Vegetative meristems are are 30% larger than wild type. After bolting inflorescence meristems are enlarged and occasionally fasciated. Flowers occasionally produce extra organs in the first 3 whorls and always produced extra carpels. In most flowers only 4 of the 6 stamens develop to maturity. Pedicels are also elongated.,WT root phenotype. 34% of terminal flowers have extra carpels in the fourth whorl. Club-shaped siliques; Floral defects-R. Simon-2008 FUNCTION: Involved in the perception of CLV3 and CLV3-like (CLE) peptides, that acts as a extracellular signals regulating meristems maintenance. Modulates root, shoot and flower apical meristems maintenance and floral organ development regulation, probably via CLAVATA (CLV)-like pathways involving at least CLV3 and CLE19. In complex with CLV2, perceives secreted CLV3-like effector proteins from plant-parasitic cyst nematodes as ligand mimics of the plant CLE signaling pathway (PubMed:21265896). This recognition is required for proper feeding structure (syncytium) development and ultimately successful nematode infection (PubMed:21265896). CLE14 perception by CLV2/CRN complex triggers root meristem differentiation (PubMed:20697738, PubMed:28586647). {ECO:0000269|PubMed:12932329, ECO:0000269|PubMed:18381924, ECO:0000269|PubMed:18854335, ECO:0000269|PubMed:19933383, ECO:0000269|PubMed:20697738, ECO:0000269|PubMed:21265896, ECO:0000269|PubMed:28586647}. 44527 Inactive leucine-rich repeat receptor-like protein kinase CORYNE (Protein SUPPRESSOR OF OVEREXPRESSION OF LLP1 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase binding [GO:0019900]; receptor serine/threonine kinase binding [GO:0033612]; protein phosphorylation [GO:0006468]; regulation of flower development [GO:0009909]; regulation of meristem growth [GO:0010075] DEVELOPMENTAL STAGE: First observed in 16-cells stage embryo and surrounding region. From early heart to early torpedo stage, confined to the developing vasculature of the hypocotyl, cotyledons, and developing root. Faint expression in the emerging shoot apical meristem (SAM) at the torpedo stage. After germination, present in root, shoot and inflorescence meristems, as well as in young flower primordia and ovules. In roots, detected in the basal end of the root meristem, comprising the quiescent center, surrounding initials, and vascular precursors. Also present in the vasculature of primary and lateral roots, in the pericycle at sites of lateral root initiation, in lateral root meristems, and in the vasculature of the leaves. Accumulates in stamen and carpel primordia. Expressed in young provascular tissue of floral organs and stem tissue. {ECO:0000269|PubMed:18381924}. TISSUE SPECIFICITY: Present in roots, stems, leaves, inflorescence, flowers and siliques. Mostly expressed in shoot tips and, to a lesser extent, in young organs and roots. {ECO:0000269|PubMed:18381924, ECO:0000269|PubMed:18854335}. locus:2183906; AT5G13290 receptor-like protein kinase Os01g0927500 protein (Systemin receptor-like) (cDNA clone:J013159J12, full insert sequence) (cDNA clone:J033033P12, full insert sequence) Q5JK22 Q5JK22_ORYSJ Os01g0927500 OSJNBa0093F16.31 OSNPB_010927500 ENOG411DXC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os02g0816200 protein (Putative family II lipase EXL4) (cDNA clone:001-003-G01, full insert sequence) (cDNA clone:001-207-B01, full insert sequence) Q6K6B3 Q6K6B3_ORYSJ Os02g0816200 Os02g0816200 OsJ_08867 OSNPB_020816200 P0643F09.14 ENOG411DXC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL TRIO domain containing protein expressed Os01g0264700 protein (Putative sec14 like protein) Q5NBA0 Q5NBA0_ORYSJ Os01g0264700 Os01g0264700 OSNPB_010264700 P0453A06.27 P0499C11.9 ENOG411DXC7 RRF Q9M1X0 RRFC_ARATH Ribosome-recycling factor, chloroplastic (RRF) (CpFrr) (RRFHCP) (Ribosome-releasing factor, chloroplastic) Null: Embryo defective; Knockdown: Seedling lethal without exogenous sucrose-L. Zhang-2010 FUNCTION: Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis. {ECO:0000250}. 30422 Ribosome-recycling factor, chloroplastic (RRF) (CpFrr) (RRFHCP) (Ribosome-releasing factor, chloroplastic) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; thylakoid [GO:0009579]; copper ion binding [GO:0005507]; ribosomal large subunit binding [GO:0043023]; chloroplast organization [GO:0009658]; cytoplasmic translational termination [GO:0002184]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; embryo development ending in seed dormancy [GO:0009793]; plastid translation [GO:0032544] locus:2077254; AT3G63190 ribosome-recycling factor Ribosome-recycling factor, chloroplastic (RRF) (Protein OsL8) (Ribosome-releasing factor, chloroplastic) A3BLC3 RRFC_ORYSJ Os07g0570700 LOC_Os07g38300 OJ1121_A05.3 OsJ_023845 OsJ_24808 FUNCTION: Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis. {ECO:0000250}. ENOG411DXC6 F4JCQ3 DG783_ARATH Putative DNA glycosylase At3g47830 (EC 3.2.2.-) 3.2.2.- 32967 Putative DNA glycosylase At3g47830 (EC 3.2.2.-) hydrolase activity, acting on glycosyl bonds [GO:0016798]; base-excision repair [GO:0006284] locus:2100382; AT3G47830 base excision DNA repair Os06g0237900 protein A0A0P0WUD6 A0A0P0WUD6_ORYSJ Os06g0237900 OSNPB_060237900 ENOG411DXCY MGN6.8 Q9FI03 Q9FI03_ARATH At5g53730 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Similarity to harpin-induced protein) FUNCTION: Involved in the regulation of sugar, amino acid and some primary metabolite export from companion cells (CCs) to sieve elements (SEs) in phloem. Required for apoplastic phloem sugar loading in source leaves in order to transport it to sink tissues. Required for correct sugar partitioning between source leaves and sink organs. {ECO:0000269|PubMed:23715470}. MISCELLANEOUS: Plants over-expressing NHL26 exhibit slow growth, accumulate high levels of carbohydrates in mature leaves, have increased shoot biomass, decreased root biomass and decreased seed yield. {ECO:0000269|PubMed:23715470}. 23911 At5g53730 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Similarity to harpin-induced protein) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] locus:2164092; AT5G53730 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411DXCP GLIP5 Q9SSA7 GLIP5_ARATH GDSL esterase/lipase 5 (EC 3.1.1.-) (Extracellular lipase 5) ARA:AT1G53920-MONOMER; 3.1.1.- 43458 GDSL esterase/lipase 5 (EC 3.1.1.-) (Extracellular lipase 5) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] locus:2197014; AT1G53920 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411DXCS Q9M8M3 PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550, mitochondrial 52511 Pentatricopeptide repeat-containing protein At1g80550, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2198908; AT1G80550 Pentatricopeptide repeat-containing protein OSJNBa0033G05.8 protein (Os04g0643700 protein) (cDNA clone:J023008O12, full insert sequence) (cDNA clone:J033024K07, full insert sequence),Os04g0643700 protein (Fragment) Q7XTN4,A0A0P0WFR9 Q7XTN4_ORYSJ,A0A0P0WFR9_ORYSJ Os04g0643700 OsJ_16385 OSJNBa0033G05.8 OSNPB_040643700,Os04g0643700 OSNPB_040643700 ENOG411DXCT ARGAH2,ARGAH1 Q9ZPF5,P46637,B9DFC0 ARGI2_ARATH,ARGI1_ARATH,B9DFC0_ARATH Arginase 2, mitochondrial (EC 3.5.3.1) (Arginine amidohydrolase 2),Arginase 1, mitochondrial (EC 3.5.3.1) (Arginine amidohydrolase 1),AT4G08870 protein (Arginase/deacetylase superfamily protein) DISRUPTION PHENOTYPE: Increased formation of lateral and adventitious roots and increased production of NO in roots. {ECO:0000269|PubMed:18567826}. Increased lateral and adventitious root number; Elevated nitric oxide levels-J. Polacco-2008 FUNCTION: Catalyzes the hydrolysis of L-arginine to urea and L-ornithine. The latter can be utilized in the urea cycle or as a precursor for the synthesis of both polyamines and proline (By similarity). Possesses agmatinase activity. Catalyzes the formation of putrescine from agmatine (PubMed:28716421). {ECO:0000250|UniProtKB:P05089, ECO:0000269|PubMed:28716421}.,FUNCTION: Catalyzes the hydrolysis of L-arginine to urea and L-ornithine. The latter can be utilized in the urea cycle or as a precursor for the synthesis of both polyamines and proline. Possesses agmatinase activity. Catalyzes the formation of putrescine from agmatine (PubMed:28716421). {ECO:0000250|UniProtKB:P05089, ECO:0000269|PubMed:28716421}. MISCELLANEOUS: Plants over-expressing ARGAH2 have decreased susceptibility to the fungal pathogen B.cinerea. {ECO:0000305|PubMed:22188168}. PATHWAY: Nitrogen metabolism; urea cycle; L-ornithine and urea from L-arginine: step 1/1. {ECO:0000250|UniProtKB:P05089}. ARA:AT4G08900-MONOMER;MetaCyc:AT4G08900-MONOMER; R-ATH-351143; 3.5.3.1 37980,37345,29314 Arginase 2, mitochondrial (EC 3.5.3.1) (Arginine amidohydrolase 2),Arginase 1, mitochondrial (EC 3.5.3.1) (Arginine amidohydrolase 1),AT4G08870 protein (Arginase/deacetylase superfamily protein) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; arginase activity [GO:0004053]; cobalt ion binding [GO:0050897]; arginine metabolic process [GO:0006525]; defense response to fungus [GO:0050832]; ornithine metabolic process [GO:0006591]; proline metabolic process [GO:0006560]; putrescine metabolic process [GO:0009445]; tyrosine metabolic process [GO:0006570]; urea cycle [GO:0000050],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; arginase activity [GO:0004053]; cobalt ion binding [GO:0050897]; arginine catabolic process [GO:0006527]; defense response to bacterium [GO:0042742]; urea cycle [GO:0000050],metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in vasculature of roots, root tips, leaves and cotyledons. {ECO:0000269|PubMed:18425591, ECO:0000269|PubMed:18567826}.,TISSUE SPECIFICITY: Expressed in vasculature of roots, root tips, cotyledons, leaves, cauline leaves, stems, sepals and pollen. {ECO:0000269|PubMed:18425591, ECO:0000269|PubMed:18567826}. locus:2138743;,locus:2138718; AT4G08870,AT4G08900 arginase EC 3.5.3.1 Arginase 1, mitochondrial (EC 3.5.3.1) (Arginine amidohydrolase 1) Q7X7N2 ARGI1_ORYSJ ARG1 Os04g0106300 LOC_Os04g01590 OsJ_13517 OSJNBb0004G23.10 OSJNBb0085F13.5 FUNCTION: Catalyzes the hydrolysis of L-arginine to urea and L-ornithine. The latter can be utilized in the urea cycle or as a precursor for the synthesis of both polyamines and proline (By similarity). {ECO:0000250}. ENOG411DXCV PXN O04200 PXN_ARATH Peroxisomal nicotinamide adenine dinucleotide carrier (Peroxisomal NAD carrier) (Peroxisomal membrane protein 38, (PMP36)) (AtPMP38) (Protein ABERRANT PEROXISOME MORPHOLOGY 3) (Solute carrier family 25 member 17) DISRUPTION PHENOTYPE: No germination or growth inhibition, but delayed storage oil mobilization. Decreased sensitivity to 4-(2,4-dichlorophenoxy)butanoic acid (2,4-DB), a precursor converted in vivo by beta-oxidation into the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D). Enlarged peroxisomes. {ECO:0000269|PubMed:21895810, ECO:0000269|PubMed:22034551}. FUNCTION: Mediates the NAD(+) import into peroxisomes. Favors the NAD(+)(in)/AMP(out) antiport exchange, but is also able to catalyze a low unidirectional transport that might be essential under special conditions. Transports CoA, dephospho-CoA, acetyl-CoA, adenosine 3',5'-diphosphate (PAP), NAD(+), AMP, ADP and NADH, but has no activity with ATP, GTP, GDP, NADPH, NADP(+) or FAD. Required for peroxisomes proliferation. {ECO:0000269|PubMed:21895810, ECO:0000269|PubMed:22034551, ECO:0000269|PubMed:22555559}. R-ATH-389599; 36213 Peroxisomal nicotinamide adenine dinucleotide carrier (Peroxisomal NAD carrier) (Peroxisomal membrane protein 38, (PMP36)) (AtPMP38) (Protein ABERRANT PEROXISOME MORPHOLOGY 3) (Solute carrier family 25 member 17) glyoxysomal membrane [GO:0046861]; integral component of peroxisomal membrane [GO:0005779]; mitochondrial inner membrane [GO:0005743]; peroxisome [GO:0005777]; vacuolar membrane [GO:0005774]; ADP transmembrane transporter activity [GO:0015217]; AMP transmembrane transporter activity [GO:0080122]; antiporter activity [GO:0015297]; ATP transmembrane transporter activity [GO:0005347]; coenzyme A transmembrane transporter activity [GO:0015228]; FAD transmembrane transporter activity [GO:0015230]; FMN transmembrane transporter activity [GO:0044610]; NAD transporter activity [GO:0051724]; mitochondrial transport [GO:0006839]; NAD transport [GO:0043132]; nucleoside transport [GO:0015858]; regulation of peroxisome size [GO:0044375] TISSUE SPECIFICITY: Expressed in cotyledons, hypocotyls, vascular tissues, trichomes, hydathodes, seeds, pedicels, flowers and stigma. {ECO:0000269|PubMed:21895810, ECO:0000269|PubMed:22034551}. locus:2061176; AT2G39970 mitochondrial substrate carrier family protein Os03g0265300 protein (Peroxisomal membrane protein, putative, expressed) (cDNA clone:J033043H11, full insert sequence),Os02g0225000 protein (Os09g0508900 protein) (cDNA clone:001-044-E12, full insert sequence) (cDNA clone:J013050L01, full insert sequence) Q84QA9,B7EBN1 Q84QA9_ORYSJ,B7EBN1_ORYSJ OJ1012B02.12 LOC_Os03g15860 Os03g0265300 OsJ_10245 OSNPB_030265300,Os09g0508900 Os02g0225000 OSNPB_020225000 OSNPB_090508900 ENOG411DXCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Transmembrane protein 18 NA NA NA NA NA NA NA ENOG411DXCN EMB2369 Q9XEA0 SYLM_ARATH Leucine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.4) (Leucyl-tRNA synthetase) (LeuRS) (Protein EMBRYO DEFECTIVE 2369) DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at the globular stage. {ECO:0000305|PubMed:16297076}. Embryo defective; Globular-D. Meinke-2004 FUNCTION: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a two step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:Q9P2J5}. ARA:AT4G04350-MONOMER; 6.1.1.4 111033 Leucine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.4) (Leucyl-tRNA synthetase) (LeuRS) (Protein EMBRYO DEFECTIVE 2369) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; leucine-tRNA ligase activity [GO:0004823]; embryo development ending in seed dormancy [GO:0009793]; leucyl-tRNA aminoacylation [GO:0006429]; mitochondrial translation [GO:0032543] locus:2134887; AT4G04350 tRNA synthetases class I (I L M and V) Os01g0120300 protein (Fragment) A0A0P0UX97 A0A0P0UX97_ORYSJ Os01g0120300 OSNPB_010120300 ENOG411DXCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE Os10g0344600 protein A0A0P0XTZ0 A0A0P0XTZ0_ORYSJ Os10g0344600 OSNPB_100344600 ENOG411DXCC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POLAc Os04g0637400 protein (Fragment),Os08g0175600 protein (Fragment) Q0J9P9,A0A0P0XC92 Q0J9P9_ORYSJ,A0A0P0XC92_ORYSJ Os04g0637400 Os04g0637400 OSNPB_040637400,Os08g0175600 OSNPB_080175600 ENOG411DXCB URT1 O64642 URT1_ARATH UTP:RNA uridylyltransferase 1 (EC 2.7.7.52) FUNCTION: UTP:RNA uridylyltransferase with a marked preference for uridine polymerization and a distributive activity for the first added nucleotides (PubMed:23748567, PubMed:25928405). Uridylates oligo(A)-tailed mRNAs to prevent 3' to 5' ribonucleotytic attacks (PubMed:23748567). Can prevent the 3' trimming of mRNAs still engaged on polysomes (PubMed:23748567). Acts synergistically with HESO1 in unmethylated miRNA uridylation, leading to their degradation (PubMed:25928341). URT1 and HESO1 prefer substrates with different 3' end nucleotides and act cooperatively to tail different forms of the same miRNAs (PubMed:25928405). URT1 and HESO1 act sequentially, with URT1 mono-uridylating the miRNAs followed by their further uridylation by HESO1 (PubMed:25928405). Has no effect on uridylation of heterochromatic siRNAs (PubMed:25928341). Able to act on AGO1-bound miRNAs and the uridylated species stay associated with AGO1 (PubMed:25928405). {ECO:0000269|PubMed:23748567, ECO:0000269|PubMed:25928341, ECO:0000269|PubMed:25928405}. 2.7.7.52 85764 UTP:RNA uridylyltransferase 1 (EC 2.7.7.52) P-body [GO:0000932]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA uridylyltransferase activity [GO:0050265]; mRNA processing [GO:0006397]; positive regulation of production of siRNA involved in RNA interference [GO:1903705]; regulation of gene silencing by miRNA [GO:0060964]; RNA 3' uridylation [GO:0071076] locus:2043669; AT2G45620 Cid1 family poly A polymerase Os10g0188300 protein (Fragment),Os02g0122100 protein (Fragment) A0A0P0XSC2,A0A0P0VE25 A0A0P0XSC2_ORYSJ,A0A0P0VE25_ORYSJ Os10g0188300 OSNPB_100188300,Os02g0122100 OSNPB_020122100 ENOG411DXCE IMPA2,IMPA5,IMPA1,IMPA8 F4JL11,Q9FJ09,Q96321,Q9FJ92,A0A1P8BDF2,F4HPE4 IMPA2_ARATH,IMPA5_ARATH,IMPA1_ARATH,IMPA8_ARATH,A0A1P8BDF2_ARATH,F4HPE4_ARATH Importin subunit alpha-2 (IMPa-2),Importin subunit alpha-5 (IMPa-5) (Importin subunit alpha),Importin subunit alpha-1 (IMPa-1) (Karyopherin subunit alpha-1) (KAP-alpha-1),Importin subunit alpha-8 (IMPa-8),Importin subunit alpha,ARM repeat superfamily protein Homozygotes have a WT phenotype with regards to susceptibility to transformation by Agrobacterium. FUNCTION: Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity). Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium, but is not essential for Agrobacterium-mediated root transformation (PubMed:18836040). {ECO:0000250|UniProtKB:Q96321, ECO:0000269|PubMed:18836040}.,FUNCTION: Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope. {ECO:0000250|UniProtKB:Q96321}.,FUNCTION: Binds to conventional NLS motifs with high affinity in the absence of an importin beta subunit. Mediates nuclear protein import across the nuclear envelope in vitro in the absence of exogenously added importin beta subunit (PubMed:10428841). Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium, but is not essential for Agrobacterium-mediated root transformation (PubMed:18836040). {ECO:0000269|PubMed:10428841, ECO:0000269|PubMed:18836040}. 58907,58029,58645,49338,42693,20805 Importin subunit alpha-2 (IMPa-2),Importin subunit alpha-5 (IMPa-5) (Importin subunit alpha),Importin subunit alpha-1 (IMPa-1) (Karyopherin subunit alpha-1) (KAP-alpha-1),Importin subunit alpha-8 (IMPa-8),Importin subunit alpha,ARM repeat superfamily protein cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; plasmodesma [GO:0009506]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607],cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607],cell wall [GO:0005618]; cytosol [GO:0005829]; nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607]; protein import into nucleus [GO:0006606],cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607]; pollen sperm cell differentiation [GO:0048235] locus:505006475;,locus:2155929;,locus:2083313;,locus:2173123;,locus:2037900; AT4G16143,AT5G49310,AT3G06720,AT5G52000,AT1G32880 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (By similarity) Importin subunit alpha-1a,Importin subunit alpha-1b,Importin subunit alpha,Os01g0343200 protein (Fragment) Q71VM4,Q9SLX0,Q5ZBD1,A0A0P0V245 IMA1A_ORYSJ,IMA1B_ORYSJ,Q5ZBD1_ORYSJ,A0A0P0V245_ORYSJ Os01g0253300 LOC_Os01g14950,Os05g0155601 LOC_Os05g06350,Os01g0343200 B1045F02.27 OSNPB_010343200,Os01g0343200 OSNPB_010343200 FUNCTION: Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. {ECO:0000269|PubMed:11124253, ECO:0000269|PubMed:9727027}.,FUNCTION: Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif. {ECO:0000269|PubMed:11124253}.,FUNCTION: Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. {ECO:0000256|PIRNR:PIRNR005673}. ENOG411DXCD emb1379 Q84VP9 Q84VP9_ARATH At5g21140 (Embryo defective 1379) (Uncharacterized protein At5g21140) Embryo defective; Preglobular / Globular-D. Meinke-2003 35022 At5g21140 (Embryo defective 1379) (Uncharacterized protein At5g21140) nucleus [GO:0005634]; Smc5-Smc6 complex [GO:0030915]; ubiquitin-protein transferase activity [GO:0004842]; double-strand break repair [GO:0006302]; double-strand break repair via homologous recombination [GO:0000724]; postreplication repair [GO:0006301]; protein ubiquitination [GO:0016567] locus:2179003; AT5G21140 Nse1 non-SMC component of SMC5-6 complex family protein Os12g0127100 protein,Nse1 non-SMC component of SMC5-6 complex family protein, expressed (Os11g0130300 protein) B9GBN5,Q2RB11 B9GBN5_ORYSJ,Q2RB11_ORYSJ Os12g0127100 OsJ_35085 OSNPB_120127100,LOC_Os11g03590 Os11g0130300 OsJ_32811 OSNPB_110130300 ENOG411DXCG NAC002 Q39013 NAC2_ARATH NAC domain-containing protein 2 (ANAC002) 32922 NAC domain-containing protein 2 (ANAC002) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:2198225; AT1G01720 (NAC) domain-containing protein NA NA NA NA NA NA NA ENOG411DXCF PRA1A1,PRA1A3,F24K9.5 Q9LZM7,Q8W115,Q9CAY5,Q3EB86,Q3EB87 PR1A1_ARATH,PR1A3_ARATH,Q9CAY5_ARATH,Q3EB86_ARATH,Q3EB87_ARATH PRA1 family protein A1 (AtPRA1.A1),PRA1 family protein A3 (AtPRA1.A3),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F24K9.5),Cysteine/Histidine-rich C1 domain family protein FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 23833,24098,82378,81693,88346 PRA1 family protein A1 (AtPRA1.A1),PRA1 family protein A3 (AtPRA1.A3),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F24K9.5),Cysteine/Histidine-rich C1 domain family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] locus:2185198;,locus:1006230201;,locus:2080757;,locus:504955841;,locus:1006230199; AT5G02040,AT3G11397,AT3G11390,AT3G11402,AT3G11385 PRA1 family PRA1 family protein B7E4Q0,Q5N791 B7E4Q0_ORYSJ,Q5N791_ORYSJ Os05g0455600 Os05g0455600 OSNPB_050455600,Os01g0847900 OsJ_04073 OSNPB_010847900 P0005H10.20 FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. ENOG411E2SI rps8 P56801 RR8_ARATH 30S ribosomal protein S8, chloroplastic FUNCTION: One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit. {ECO:0000250}. 15479 30S ribosomal protein S8, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954700; ATCG00770 One of the primary rRNA binding proteins it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (By similarity) 30S ribosomal protein S8, chloroplastic P0C494 RR8_ORYSJ rps8 FUNCTION: One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit. {ECO:0000250}. ENOG411E2SJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA kDa class IV heat shock 21.9 kDa heat shock protein (OsHsp21.9) Q53M11 HS219_ORYSJ HSP21.9 Os11g0244200 LOC_Os11g13980 ENOG411E2SK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRRcap Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 (ANP32/acidic nuclear phosphoprotein-like protein 2) Q7Y180 AN322_ORYSJ Os03g0668900 LOC_Os03g46600 OsJ_12028 OSJNBa0039O18.14 OSJNBb0036M02.2 ENOG411E2SD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-like A4 (OsEXLA4) (OsEXPL4) Q5Z980 EXLA4_ORYSJ EXLA4 EXPL4 Os06g0725300 LOC_Os06g50960 P0548E04.14 ENOG411E2SB ATHB-7,ATHB-12,HB-7 P46897,Q9M276,F4IJ86 ATHB7_ARATH,ATB12_ARATH,F4IJ86_ARATH Homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein ATHB-7) (Homeodomain transcription factor ATHB-7),Homeobox-leucine zipper protein ATHB-12 (HD-ZIP protein ATHB-12) (Homeodomain transcription factor ATHB-12),Homeobox 7 Decreased sensitivity to ABA in a root elongation assay with respect to wild type. The response was consistently approximately 10% less than the wild-type response. Long roots in response to ABA-E. Soderman-2004 FUNCTION: Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.,FUNCTION: Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. 30511,27485,30269 Homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein ATHB-7) (Homeodomain transcription factor ATHB-7),Homeobox-leucine zipper protein ATHB-12 (HD-ZIP protein ATHB-12) (Homeodomain transcription factor ATHB-12),Homeobox 7 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to virus [GO:0009615]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. locus:2062754;,locus:2079542; AT2G46680,AT3G61890 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX6 (HD-ZIP protein HOX6) (Homeodomain transcription factor HOX6) (OsHox6) Q651Z5 HOX6_ORYSJ HOX6 Os09g0528200 LOC_Os09g35910 OJ1439_F07.36 FUNCTION: Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. ENOG411E2SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0936700 protein (Putative glutamic acid-rich protein) Q8S1V7 Q8S1V7_ORYSJ Os01g0936700 OSNPB_010936700 P0504E02.1 ENOG411E2SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIGANc NA NA NA NA NA NA NA ENOG411E2SZ Q9ZVI6 LOR8_ARATH Protein LURP-one-related 8 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 22294 Protein LURP-one-related 8 locus:2064179; AT2G38640 Pfam:DUF567 NA NA NA NA NA NA NA ENOG411E2SU MUK11.15 Q9FMC7 Q9FMC7_ARATH Nuclear transport factor 2 (NTF2) family protein (Uncharacterized protein At5g04830) 20294 Nuclear transport factor 2 (NTF2) family protein (Uncharacterized protein At5g04830) plasma membrane [GO:0005886] locus:2175463; AT5G04830 NA Os01g0965900 protein (cDNA clone:002-152-E03, full insert sequence) Q5JJV6 Q5JJV6_ORYSJ Os01g0965900 OsJ_04880 OSNPB_010965900 P0458E05.22 ENOG411E2SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os10g0430600 protein),Os10g0430800 protein (Fragment),Os10g0430700 protein (Fragment) Q109N4,A0A0P0XUF0,A0A0P0XUS0,A0A0P0XUG4 Q109N4_ORYSJ,A0A0P0XUF0_ORYSJ,A0A0P0XUS0_ORYSJ,A0A0P0XUG4_ORYSJ Os10g0430600 LOC_Os10g29502 Os10g0430600 OSNPB_100430600,Os10g0430800 OSNPB_100430800,Os10g0430700 OSNPB_100430700 ENOG411E2SP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0623300 protein (Putative splicing factor, arginine/serine-rich 2 (Splicing factor SC35)) (cDNA clone:J023050C05, full insert sequence) Q8LHL0 Q8LHL0_ORYSJ P0524E08.112 Os07g0623300 OsJ_25178 OSNPB_070623300 ENOG411E2SQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0753900 protein (Fragment) A0A0P0VPR1 A0A0P0VPR1_ORYSJ Os02g0753900 OSNPB_020753900 ENOG411E2S8 MSRB1 Q9C8M2 MSRB1_ARATH Peptide methionine sulfoxide reductase B1, chloroplastic (AtMSRB1) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase) Sensitive to low temperature-P. Rey-2009 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Specifically reduces the MetSO R-enantiomer. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May play an essential function in association with MSRB2 in maintaining vegetative growth during environmental constraints, through the preservation of photosynthetic antennae. MSRB1 and MSRB2 account for most of the leaf peptide MSR capacity. {ECO:0000269|PubMed:15923321, ECO:0000269|PubMed:17761174, ECO:0000269|PubMed:19457862, ECO:0000269|PubMed:19874542, ECO:0000269|PubMed:20236937}. MISCELLANEOUS: Lacks the conserved cysteine (here Thr-132) required for the reduction by thioredoxins (TRX) through a dithiol-disulfide exchange involving both redox-active Cys of TRX and MSRB. Reduced by thioredoxin CDSP32 which regenerates MSRB1 through the direct reduction of the sulfenic acid formed on the catalytic Cys, without the help of any other thiol compound. Also reduced by the glutahione/glutaredoxin (GSH/GRX) system via a glutathionylation step of the sulfenic acid and then by GRX reduction of the GSH-MSR adduct. 1.8.4.12 22607 Peptide methionine sulfoxide reductase B1, chloroplastic (AtMSRB1) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; metal ion binding [GO:0046872]; peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; protein repair [GO:0030091]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed at low levels in stems, leaves, floral buds, flowers and siliques (at protein level). {ECO:0000269|PubMed:15923321}. locus:2024817; AT1G53670 methionine sulfoxide reductase Peptide methionine sulfoxide reductase B1, chloroplastic (OsMSRB1) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Os06g0472000 protein Q0DC89,A0A0P0WWR9 MSRB1_ORYSJ,A0A0P0WWR9_ORYSJ MSRB1 Os06g0472000 LOC_Os06g27760 OsJ_21331 P0613F06.49-1,Os06g0472000 OSNPB_060472000 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Involved in abiotic stress response. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer. {ECO:0000269|PubMed:19415325}. MISCELLANEOUS: Lacks the conserved cysteine (here Thr-148) required for the reduction by thioredoxins (TRX) through a dithiol-disulfide exchange involving both redox-active Cys of TRX and MSRB. The reduction mechanism may occur through sulfenic acid formation on the catalytic cysteine (Cys-202). ENOG411E2S9 T22I11.11 Q9LPU1 Q9LPU1_ARATH Secondary thiamine-phosphate synthase enzyme (T22I11.11 protein) (Uncharacterized protein At1g21065) 23708 Secondary thiamine-phosphate synthase enzyme (T22I11.11 protein) (Uncharacterized protein At1g21065) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:505006137; AT1G21065 Uncharacterised protein family UPF0047 Os02g0187500 protein (cDNA clone:J023004P18, full insert sequence),Os06g0638200 protein (Fragment),Os02g0187500 protein (Fragment) Q6ZHS7,Q0DAQ8,A0A0P0VFJ7 Q6ZHS7_ORYSJ,Q0DAQ8_ORYSJ,A0A0P0VFJ7_ORYSJ Os02g0187500 Os02g0187500 OJ1073_F05.26 OJ1145_F01.1 OsJ_05676 OSNPB_020187500,Os06g0638200 Os06g0638200 OSNPB_060638200,Os02g0187500 OSNPB_020187500 ENOG411E2S4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os07g0680400 protein (WRKY transcription factor) (cDNA clone:002-173-B01, full insert sequence) Q7XHX5 Q7XHX5_ORYSJ Os07g0680400 Os07g0680400 OJ1205_F02.22 OSJNBa0008J01.9 OSNPB_070680400 ENOG411E2S5 Q8RXX5,Q8W463 RK192_ARATH,RK191_ARATH 50S ribosomal protein L19-2, chloroplastic,50S ribosomal protein L19-1, chloroplastic FUNCTION: Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA. {ECO:0000250}. 25469,25519 50S ribosomal protein L19-2, chloroplastic,50S ribosomal protein L19-1, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2171609;,locus:2129186; AT5G47190,AT4G17560 ribosomal protein Os02g0652600 protein (Putative plastid ribosomal protein L19) (cDNA clone:006-209-G03, full insert sequence) (cDNA clone:J013135C05, full insert sequence) Q6H8H3 Q6H8H3_ORYSJ Os02g0652600 OSNPB_020652600 P0491E01.20 ENOG411E2S6 MIS12 Q2V0Z5 MIS12_ARATH Protein MIS12 homolog (Protein MINICHROMOSOME INSTABILITY 12) (AtMIS12) (Protein MIS12-LIKE) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:16331414}. No defects in kinetochore assembly are detected in this mutant but it does grow more slowly than wild type plants at elevated temperatures (25-30 degrees C).,No homozygous mutants could be recovered in selfed seed suggesting that loss of MIS12 causes embryo lethality. Null: No homozygous mutant plants recovered; Knockdown: Slow growth at high temperature-M. Murata-2005 FUNCTION: Constitutive component of kinetochores that is essential for proper cell division during mitotic cell cycle (Probable). May play a role in the modulation of centromere during meiosis (PubMed:21695238). {ECO:0000269|PubMed:21695238, ECO:0000305|PubMed:16331414}. 27126 Protein MIS12 homolog (Protein MINICHROMOSOME INSTABILITY 12) (AtMIS12) (Protein MIS12-LIKE) chromosome, centromeric region [GO:0000775]; nuclear MIS12/MIND complex [GO:0000818]; nucleus [GO:0005634]; cell division [GO:0051301]; kinetochore assembly [GO:0051382]; meiotic cell cycle [GO:0051321]; mitotic sister chromatid segregation [GO:0000070]; protein localization to kinetochore [GO:0034501] locus:2169508; AT5G35520 Mis12 protein Kinetochore protein-like (Os02g0620100 protein) (cDNA clone:J033014J17, full insert sequence) Q6K9G7 Q6K9G7_ORYSJ Os02g0620100 Os02g0620100 OJ1372_D06.21 OsJ_07558 OSNPB_020620100 ENOG411E2S7 Q0WW53 Q0WW53_ARATH Phosphoglycerate mutase family protein (Uncharacterized protein At4g38370) 25257 Phosphoglycerate mutase family protein (Uncharacterized protein At4g38370) cytosol [GO:0005829]; phosphatase activity [GO:0016791] locus:2121773; AT4G38370 Pfam:PGAM NA NA NA NA NA NA NA ENOG411E2S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0586800 protein (Fragment) A0A0P0V4K4 A0A0P0V4K4_ORYSJ Os01g0586800 OSNPB_010586800 ENOG411E2S2 RPS16B,RPS16A,RPS16C Q9M8X9,Q9SK22,Q42340,F4JWM1,A8MRX2 RS162_ARATH,RS161_ARATH,RS163_ARATH,F4JWM1_ARATH,A8MRX2_ARATH 40S ribosomal protein S16-2,40S ribosomal protein S16-1,40S ribosomal protein S16-3,Ribosomal protein S5 domain 2-like superfamily protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 16586,16631,16617,16054,16545 40S ribosomal protein S16-2,40S ribosomal protein S16-1,40S ribosomal protein S16-3,Ribosomal protein S5 domain 2-like superfamily protein chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],chloroplast [GO:0009507]; cytosolic small ribosomal subunit [GO:0022627]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2103035;,locus:2052120;,locus:2146273; AT3G04230,AT2G09990,AT5G18380 ribosomal protein 40S ribosomal protein S16 Q0IQF7 RS16_ORYSJ RPS16A Os11g0127900 LOC_Os11g03400 OsJ_031480; RPS16B Os12g0124200 LOC_Os12g03090 ENOG411E2S3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Actin-depolymerizing protein. Severs actin filaments (F- actin) and binds to actin monomers (By similarity) Actin-depolymerizing factor 9 (ADF-9) (OsADF9) Q8H2P8 ADF9_ORYSJ ADF9 Os07g0484200 LOC_Os07g30090 OJ1136_F08.120 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (By similarity). {ECO:0000250}. ENOG411E07F Q9LYG8 Q9LYG8_ARATH PHD family protein (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-like protein) (Uncharacterized protein At5g11620) (Uncharacterized protein At5g11620/T22P22_10) (Uncharacterized protein T22P22_10) 30608 PHD family protein (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-like protein) (Uncharacterized protein At5g11620) (Uncharacterized protein At5g11620/T22P22_10) (Uncharacterized protein T22P22_10) kinase activity [GO:0016301]; zinc ion binding [GO:0008270] locus:2181915; AT5G11620 SWIM zinc finger Os06g0554100 protein Q5Z9C5 Q5Z9C5_ORYSJ P0427B07.42 Os06g0554100 OSNPB_060554100 ENOG411E07D F4JMH0 F4JMH0_ARATH ARM repeat superfamily protein 50324 ARM repeat superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2130699; AT4G16490 U-box domain-containing protein Arm repeat containing protein homolog-like (Os07g0584900 protein) (cDNA clone:001-015-B09, full insert sequence) (cDNA clone:001-029-H02, full insert sequence) Q7F1U7 Q7F1U7_ORYSJ OJ1060_D03.106 OJ1127_E01.131 Os07g0584900 OSNPB_070584900 ENOG411E07C Q940N6 Q940N6_ARATH AT5g21070/T10F18_100 (Fe(3+) dicitrate transport system permease) 24214 AT5g21070/T10F18_100 (Fe(3+) dicitrate transport system permease) integral component of membrane [GO:0016021] locus:2178948; AT5G21070 Glycosyl hydrolases family 17 protein Os01g0277700 protein (cDNA clone:006-208-A12, full insert sequence) (cDNA clone:J023115B14, full insert sequence) Q5NBJ9 Q5NBJ9_ORYSJ Os01g0277700 OsJ_01295 OSNPB_010277700 P0025D05.3 ENOG411E07M PGL3 P92990 PGL3_ARATH Polygalacturonase 1 beta-like protein 3 (AtPGL3) (Aromatic-rich glycoprotein JP650) (PG1beta-like protein 3) (Polygalacturonase 2) (Probable polygalacturonase non-catalytic subunit JP650) DISRUPTION PHENOTYPE: Slightly reduced size of the plant. Atpgl1, atpgl2 and atpgl3 triple mutants produce smaller leaves and petioles. {ECO:0000269|PubMed:26106400}. FUNCTION: Involved in cell size determination. May serve as a chaperone for expansins through the secretory pathway. {ECO:0000269|PubMed:26106400}. MISCELLANEOUS: Unlike the tomato GP1, the BURP domain of AtPGL3 is not cleaved when the protein is secreted to the cell wall. {ECO:0000269|PubMed:26106400}. 68060 Polygalacturonase 1 beta-like protein 3 (AtPGL3) (Aromatic-rich glycoprotein JP650) (PG1beta-like protein 3) (Polygalacturonase 2) (Probable polygalacturonase non-catalytic subunit JP650) apoplast [GO:0048046]; cell wall [GO:0005618] DEVELOPMENTAL STAGE: Barely detectable in 6 days after-germination (DAG) seedlings, but highly expressed in 14 DAG seedlings. {ECO:0000269|PubMed:26106400}. TISSUE SPECIFICITY: Expressed in flowers and stems. Detected in trichomes, guard cells, root vascular tissue, root hairs, pollen sacs, sepals and styles of pistils. {ECO:0000269|PubMed:26106400}. locus:2016194; AT1G70370 Polygalacturonase non-catalytic subunit BURP domain-containing protein 12 (OsBURP12),BURP domain-containing protein 16 (OsBURP16) (Protein WGP1) (OsWGP1),BURP domain-containing protein 14 (OsBURP14) Q6ZA27,Q7XES5,Q6K2M1 BURPC_ORYSJ,BURPG_ORYSJ,BURPE_ORYSJ BURP12 Os08g0380100 LOC_Os08g29200 P0709D11.28,BURP16 WGP1 Os10g0409400 LOC_Os10g26940 OsJ_31485,BURP14 Os09g0329000 LOC_Os09g16010 OSJNBa0040N23.1 P0706E03.43 ENOG411E07J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAN NA NA NA NA NA NA NA ENOG411E07K CYCD1-1 P42751 CCD11_ARATH Cyclin-D1-1 (Cyclin-delta-1) (Cyclin-d1) (G1/S-specific cyclin-D1-1) (CycD1;1) During germination the onset of cell proliferation in root tips is significantly delayed and the overall numbers of dividing cells are reduced. The delay in cell cycle activation is linked to delayed radicle emergence. Delayed germination-J. Murray-2005 FUNCTION: May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion. {ECO:0000269|PubMed:16227434}. 38277 Cyclin-D1-1 (Cyclin-delta-1) (Cyclin-d1) (G1/S-specific cyclin-D1-1) (CycD1;1) nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301] DEVELOPMENTAL STAGE: Transiently expressed in the root tip during seed germination up to about 21 hours after stratification. {ECO:0000269|PubMed:16227434}. TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:7696881}. locus:2020663; AT1G70210 cell division Cyclin-D2-1 (G1/S-specific cyclin-D2-1) (CycD2;1),Cyclin-D1-2 (G1/S-specific cyclin-D1-2) (CycD1;2),Os08g0421100 protein (Fragment) Q0J233,Q8H339,A0A0N7KPV4 CCD21_ORYSJ,CCD12_ORYSJ,A0A0N7KPV4_ORYSJ CYCD2-1 Os09g0382300 LOC_Os09g21450 P0505H05.23,CYCD1-2 Os08g0421100 LOC_Os08g32540 OJ1188_F05.24 OSJNBa0077M12.105,Os08g0421100 OSNPB_080421100 ENOG411E07H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain-containing protein Os01g0235800 protein (Fragment) A0A0N7KCM4 A0A0N7KCM4_ORYSJ Os01g0235800 OSNPB_010235800 ENOG411E07I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os12g0118200 protein) (cDNA clone:J013090M19, full insert sequence),Expressed protein (Os11g0118800 protein) (cDNA clone:J023041H23, full insert sequence) Q2QYI4,Q2RBA7 Q2QYI4_ORYSJ,Q2RBA7_ORYSJ Os12g0118200 LOC_Os12g02570 Os12g0118200 OSNPB_120118200,LOC_Os11g02640 Os11g0118800 OsJ_32743 OSNPB_110118800 ENOG411E07V F11F8_26 Q9LYZ0,Q9SF36 Q9LYZ0_ARATH,Q9SF36_ARATH Tudor/PWWP/MBT superfamily protein (Uncharacterized protein At5g02950) (Uncharacterized protein F9G14_260),Tudor/PWWP/MBT superfamily protein (Uncharacterized protein F11F8_26) 70512,79272 Tudor/PWWP/MBT superfamily protein (Uncharacterized protein At5g02950) (Uncharacterized protein F9G14_260),Tudor/PWWP/MBT superfamily protein (Uncharacterized protein F11F8_26) locus:2151291;,locus:2074944; AT5G02950,AT3G09670 PWWP domain-containing protein NA NA NA NA NA NA NA ENOG411E07W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Splicing factor 3B subunit 4 Os01g0876500 protein (Fragment) A0A0P0VB22 A0A0P0VB22_ORYSJ Os01g0876500 OSNPB_010876500 ENOG411E07T AFPH2 Q9SV55 NINJA_ARATH AFP homolog 2 (Novel interactor of JAZ) FUNCTION: Acts as a transcriptional repressor. Negative regulator of jasmonate responses. Connects the JAZ proteins and the non-JAZ protein TIFY8 with the TOPLESS corepressors. {ECO:0000269|PubMed:20360743, ECO:0000269|PubMed:24003128, ECO:0000269|PubMed:24416306}. MISCELLANEOUS: Unlike the JAZ proteins, the stability of AFPH2/NINJA is unaffected by jasmonate. 44938 AFP homolog 2 (Novel interactor of JAZ) nucleus [GO:0005634]; defense response [GO:0006952]; jasmonic acid mediated signaling pathway [GO:0009867]; negative regulation of transcription, DNA-templated [GO:0045892]; response to jasmonic acid [GO:0009753]; transcription, DNA-templated [GO:0006351] locus:2123573; AT4G28910 ninja-family protein Protein NINJA homolog 1 (OsNINJA1) (Ninja-family protein NINJA1) (Protein NINJA homolog) (OsNINJA) (Protein NINJA homolog 2) (OsNINJA2),Os05g0558800 protein (Fragment) Q6AT41,A0A0N7KL83 NNJA4_ORYSJ,A0A0N7KL83_ORYSJ NINJA1 NINJA NINJA2 Os05g0558800 LOC_Os05g48500 OsJ_19515 OSJNBa0001A14.6,Os05g0558800 OSNPB_050558800 ENOG411E07U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cadmium-induced protein Os07g0143600 protein (Fragment) A0A0P0X2N7 A0A0P0X2N7_ORYSJ Os07g0143600 OSNPB_070143600 ENOG411E07R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Cysteine endopeptidase (Os01g0907600 protein) (Putative cysteine proteinase) Q7F3A8 Q7F3A8_ORYSJ P0497A05.8 Os01g0907600 B1417F08.21 OsJ_04473 OSNPB_010907600 ENOG411E07S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potassium channel Potassium channel KAT2,Os01g0210700 protein Q5QNI1,A0A0P0V045 KAT2_ORYSJ,A0A0P0V045_ORYSJ Os01g0210700 LOC_Os01g11250 P0031E09.16 P0466B10.26,Os01g0210700 OSNPB_010210700 FUNCTION: Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization (By similarity). {ECO:0000250}. ENOG411E07P PCMP-H57 Q9LUL5 PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330 79766 Pentatricopeptide repeat-containing protein At3g14330 chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA modification [GO:1900865]; cytidine to uridine editing [GO:0016554] locus:2090990; AT3G14330 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E07Q MUD21.16 Q9FKZ0,Q9FKZ1,A0A1P8BE12,A0A1P8BE24 DRL43_ARATH,DRL42_ARATH,A0A1P8BE12_ARATH,A0A1P8BE24_ARATH Probable disease resistance protein At5g66910,Probable disease resistance protein At5g66900,Disease resistance protein (CC-NBS-LRR class) family FUNCTION: Probable disease resistance protein. {ECO:0000250}. 92930,92245,67829,98269 Probable disease resistance protein At5g66910,Probable disease resistance protein At5g66900,Disease resistance protein (CC-NBS-LRR class) family ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952],ADP binding [GO:0043531],ADP binding [GO:0043531]; defense response [GO:0006952] locus:2174944;,locus:2175019; AT5G66910,AT5G66900 disease resistance protein At5g66900-like NA NA NA NA NA NA NA ENOG411E07Z Q8W4C1 Q8W4C1_ARATH AT4G12790 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Putative ATP/GTP-binding protein) (Uncharacterized protein At4g12790) (Uncharacterized protein At4g12790; T20K18.140) 30816 AT4G12790 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Putative ATP/GTP-binding protein) (Uncharacterized protein At4g12790) (Uncharacterized protein At4g12790; T20K18.140) intracellular [GO:0005622]; GTPase activity [GO:0003924]; RNA polymerase II complex import to nucleus [GO:0044376]; RNA polymerase III complex localization to nucleus [GO:1990022] locus:2135793; AT4G12790 Conserved hypothetical ATP binding protein Expressed protein (Os03g0714400 protein) (cDNA, clone: J090012I09, full insert sequence),Expressed protein (Os03g0337700 protein) Q10DY0,Q10LR8 Q10DY0_ORYSJ,Q10LR8_ORYSJ Os03g0714400 LOC_Os03g50620 OsJ_12343 OSNPB_030714400,Os03g0337700 LOC_Os03g21914 Os03g0337700 OSNPB_030337700 ENOG411E07X GSTU17 Q9FUS8 GSTUH_ARATH Glutathione S-transferase U17 (AtGSTU17) (EC 2.5.1.18) (GST class-tau member 17) (Glutathione S-transferase 30) (Protein EARLY RESPONSIVE TO DEHYDRATION 9) DISRUPTION PHENOTYPE: Delayed flowering, long-hypocotyl phenotype under low fluences of far-red light and insensitive to ABA-mediated inhibition of root elongation. {ECO:0000269|PubMed:20935176}. Reduced seedling biomass and fewer lateral roots on exogenous auxin; Long hypocotyl under low fluences of far-red light; Insensitive to ABA-H. Hsieh-2010 FUNCTION: Involved in light signaling, mainly phyA-mediated photomorphogenesis and in the integration of various phytohormone signals to modulate various aspects of plant development by affecting glutathione pools. In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and benzyl isothiocyanate (BITC). {ECO:0000269|PubMed:20935176}. ARA:AT1G10370-MONOMER; 2.5.1.18; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25307 Glutathione S-transferase U17 (AtGSTU17) (EC 2.5.1.18) (GST class-tau member 17) (Glutathione S-transferase 30) (Protein EARLY RESPONSIVE TO DEHYDRATION 9) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; de-etiolation [GO:0009704]; glutathione metabolic process [GO:0006749]; lateral root development [GO:0048527]; negative regulation of response to water deprivation [GO:0080148]; regulation of growth [GO:0040008]; response to growth hormone [GO:0060416]; response to karrikin [GO:0080167]; response to salt stress [GO:0009651]; toxin catabolic process [GO:0009407] locus:2012773; AT1G10370 Glutathione S-transferase NA NA NA NA NA NA NA ENOG411E07Y CCC1 Q2UVJ5,A0A1P8AWQ8 CCC1_ARATH,A0A1P8AWQ8_ARATH Cation-chloride cotransporter 1 (AtCCC1) (Protein HAPLESS 5),Cation-chloride co-transporter 1 DISRUPTION PHENOTYPE: Bushy plants with small leaves, short roots and short inflorescences containing a higher number of stems. Alteration in pollen grain development, high number of aborted siliques and few siliques with low number of seeds. {ECO:0000269|PubMed:15514068, ECO:0000269|PubMed:17355435}. Short roots and inflorescence stems; Increased branching; Slightly smaller rosette; Small cauline leaves; Reduced fertility-M. Talon-2007 FUNCTION: Cation/chloride cotransporter that mediates potassium-chloride and sodium-chloride cotransports. Involved in plant development and Cl(-) homeostasis. May be involved in long distance Cl(-) transport. Does not function as an H(+)-dependent cotransporter. {ECO:0000269|PubMed:17355435}. MISCELLANEOUS: Cotransport is inhibited by the loop diuretic bumetanide. R-ATH-426117; 106648,93000 Cation-chloride cotransporter 1 (AtCCC1) (Protein HAPLESS 5),Cation-chloride co-transporter 1 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; potassium ion symporter activity [GO:0022820]; potassium:chloride symporter activity [GO:0015379]; sodium:potassium:chloride symporter activity [GO:0008511]; sodium ion transport [GO:0006814],integral component of membrane [GO:0016021]; cation:chloride symporter activity [GO:0015377] TISSUE SPECIFICITY: Expressed in young seedlings cotyledon tips, plant vasculature, root tips and axillary buds. Expressed in root vascular strand in the pericycle and other parenchyma cells bordering xylem vessels. Expressed in the xylem/symplast boundaries of rosette stems, rosette leaves and cauline leaves. Expressed in stipules, trichomes and hydathodes. Expressed in pollen grains. {ECO:0000269|PubMed:17355435}. locus:2028170; AT1G30450 cation-chloride co-transporter Cation-chloride cotransporter 2 (OsCCC2) (Potassium-chloride cotransporter 2),Cation-chloride cotransporter 1 (OsCCC1) (Potassium-chloride cotransporter 1),Os08g0323700 protein (Fragment),Os01g0304100 protein Q657W3,Q6Z0E2,A0A0P0XEM6,A0A0P0V1L1 CCC2_ORYSJ,CCC1_ORYSJ,A0A0P0XEM6_ORYSJ,A0A0P0V1L1_ORYSJ CCC2 KCC2 Os01g0304100 LOC_Os01g19850 P0475H04.13 P0475H04.14,CCC1 KCC1 Os08g0323700 LOC_Os08g23440 OsJ_26882 OSJNBa0078D03.20,Os08g0323700 OSNPB_080323700,Os01g0304100 OSNPB_010304100 FUNCTION: Probable cation/chloride cotransporter. {ECO:0000250}.,FUNCTION: Probable cation/chloride cotransporter that may mediate potassium-chloride cotransport. Involved in plant development and K(+) and Cl(-) homeostasis. May not be involved in sodium-chloride cotransport. {ECO:0000269|PubMed:21369877}. MISCELLANEOUS: Plants silencing CCC1 have slightly shorter roots and leaves than wild-type, and are more sensitive to KCl treatment during seed germination and plant development. ENOG411EIJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E076 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os02g0640500 protein (Putative lectin-like receptor kinase) (cDNA clone:002-129-D02, full insert sequence) Q6H7D2 Q6H7D2_ORYSJ Os02g0640500 OSNPB_020640500 P0010C01.40 ENOG411E075 WAV2 Q8RXP6 Q8RXP6_ARATH Alpha/beta-Hydrolases superfamily protein (Bem46-like protein) (Uncharacterized protein At5g20520) FUNCTION: Involved in the regulation of root growth. Involved in the suppression of the root bending in response to touch stimuli, gravity and light. Regulates negatively stimulus-induced root bending through inhibition of root tip rotation. {ECO:0000269|PubMed:15659627}. 34341 Alpha/beta-Hydrolases superfamily protein (Bem46-like protein) (Uncharacterized protein At5g20520) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; organelle inner membrane [GO:0019866]; plasma membrane [GO:0005886]; serine-type peptidase activity [GO:0008236]; root development [GO:0048364] locus:2149877; AT5G20520 Prolyl oligopeptidase family Os07g0608300 protein (Putative membrane protein) (cDNA clone:001-207-C01, full insert sequence) Q6YSE8 Q6YSE8_ORYSJ Os07g0608300 OsJ_25069 OSJNBa0072I06.36 OSNPB_070608300 ENOG411E072 ndhK P56756 NDHK_ARATH NAD(P)H-quinone oxidoreductase subunit K, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit K) (NADH-plastoquinone oxidoreductase subunit K) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01356}. ARA:ATCG00430-MONOMER; 1.6.5.- 25366 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit K) (NADH-plastoquinone oxidoreductase subunit K) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; 4 iron, 4 sulfur cluster binding [GO:0051539]; metal ion binding [GO:0046872]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038]; transport [GO:0006810] locus:504954666; ATCG00430 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit K, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit K) (NADH-plastoquinone oxidoreductase subunit K),Os12g0423484 protein,Os03g0639233 protein,Os12g0423313 protein (Fragment) P0C343,A0A0P0Y9K0,A0A0P0W138,A0A0N7KTY4 NDHK_ORYSJ,A0A0P0Y9K0_ORYSJ,A0A0P0W138_ORYSJ,A0A0N7KTY4_ORYSJ ndhK psbG Nip058,Os12g0423484 OSNPB_120423484,Os03g0639233 OSNPB_030639233,Os12g0423313 OSNPB_120423313 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01356}. ENOG411E070 AED3 O04496 AED3_ARATH Aspartyl protease AED3 (EC 3.4.23.-) (Apoplastic EDS1-dependent protein 3) 3.4.23.- 47661 Aspartyl protease AED3 (EC 3.4.23.-) (Apoplastic EDS1-dependent protein 3) apoplast [GO:0048046]; cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; nucleotide binding [GO:0000166]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; regulation of programmed cell death [GO:0043067]; systemic acquired resistance [GO:0009627] locus:2024306; AT1G09750 aspartic proteinase Aspartyl protease 25 (EC 3.4.23.-) (Protein RICE ANTHER DOWN-REGULATED BY CHILLING 1) Q6F4N5 AP25_ORYSJ AP25 RADC1 Os03g0186900 LOC_Os03g08790 FUNCTION: Anther-specific aspartic protease involved in tapetal programmed cell death (PCD). Directly regulated by the transcription factor EAT1/DTD in anthers during tapetum PCD and degeneration. {ECO:0000269|PubMed:23385589}. ENOG411E071 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA kelch repeat-containing protein At3g27220-like Kelch repeat-containing protein-like (Os08g0128000 protein) (cDNA clone:J023013D19, full insert sequence) (cDNA clone:J033150H12, full insert sequence) Q6ZK44 Q6ZK44_ORYSJ Os08g0128000 Os08g0128000 OJ1163_G08.35 OsJ_25907 OSNPB_080128000 ENOG411E078 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40-like Beta Propeller Repeat family protein Expressed protein (Os12g0431300 protein),Os03g0403400 protein (WD40-like Beta Propeller Repeat family protein, expressed),Os03g0314500 protein (Fragment) Q2QSF1,Q84R85,A0A0P0VWP0,A0A0P0VWM0 Q2QSF1_ORYSJ,Q84R85_ORYSJ,A0A0P0VWP0_ORYSJ,A0A0P0VWM0_ORYSJ Os12g0431300 LOC_Os12g24330 Os12g0431300 OsJ_35933 OSNPB_120431300,LOC_Os03g28980 Os03g0403400 OSJNBb0041J20.9 OSNPB_030403400,Os03g0314500 OSNPB_030314500 ENOG411E079 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class NA NA NA NA NA NA NA ENOG411EIJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0115I09.11 protein (Os04g0268700 protein) (cDNA clone:002-180-G09, full insert sequence) Q7XLA1 Q7XLA1_ORYSJ Os04g0268700 OsJ_14074 OSJNBb0115I09.11 OSNPB_040268700 ENOG411EH76 ATGRP-4,GRP14,ATGRP-8,MBK20.3,GRP18 Q9LY11,Q1PDZ0,Q9LY10,Q9FLS1,A0A1P8B9H9,F4K817 Q9LY11_ARATH,Q1PDZ0_ARATH,Q9LY10_ARATH,Q9FLS1_ARATH,A0A1P8B9H9_ARATH,F4K817_ARATH Glycine-rich protein (Glycine-rich protein 14),Glycine-rich protein (Glycine-rich protein 18) (Glycine-rich protein atGRP),Oleosin family protein,Glycine-rich protein 18,Glycine-rich protein 14 17433,18463,21483,22089,21170,17570 Glycine-rich protein (Glycine-rich protein 14),Glycine-rich protein (Glycine-rich protein 18) (Glycine-rich protein atGRP),Oleosin family protein,Glycine-rich protein 18,Glycine-rich protein 14 integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511],integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid binding [GO:0008289]; lipid storage [GO:0019915],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915]; sexual reproduction [GO:0019953] locus:2183354;,locus:2183369;,locus:2160319; AT5G07510,AT5G07520,AT5G07600 glycine-rich protein NA NA NA NA NA NA NA ENOG411EH77 Q9FL73,Q2V2Y6,Q2V4L5,Q3EBU2 DEF69_ARATH,DEF66_ARATH,DEF68_ARATH,DEF67_ARATH Defensin-like protein 69,Putative defensin-like protein 66,Defensin-like protein 68,Putative defensin-like protein 67 10468,8939,10687,8856 Defensin-like protein 69,Putative defensin-like protein 66,Defensin-like protein 68,Putative defensin-like protein 67 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:2162575;,locus:1009023475;,locus:1009023138;,locus:1006230144; AT5G54220,AT5G54215,AT1G24062,AT2G25305 cell killing NA NA NA NA NA NA NA ENOG411EH74 O49645,Q9SUV7,Q9SUV6 O49645_ARATH,Q9SUV7_ARATH,Q9SUV6_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein T12H17.30),At4g22640 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein AT4g22640),Lipid transfer protein (Uncharacterized protein AT4g22650) 14753,12505,17405 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein T12H17.30),At4g22640 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein AT4g22640),Lipid transfer protein (Uncharacterized protein AT4g22650) anchored component of membrane [GO:0031225],integral component of membrane [GO:0016021] locus:2127580;,locus:2127590; AT4G22640,AT4G22650 NA NA NA NA NA NA NA NA ENOG411EH75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein Os07g0297100 protein (cDNA clone:J023091E23, full insert sequence),MATH domain containing protein (Os11g0631600 protein) Q6YSV3,Q2R0U7 Q6YSV3_ORYSJ,Q2R0U7_ORYSJ Os07g0297100 OSNPB_070297100 P0680C01.6,LOC_Os11g41360 Os11g0631600 OsJ_32836 OSNPB_110631600 ENOG411EH73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os07g0554700 protein,Os07g0554800 protein A0A0P0X7L2,A0A0P0X798 A0A0P0X7L2_ORYSJ,A0A0P0X798_ORYSJ Os07g0554700 OSNPB_070554700,Os07g0554800 OSNPB_070554800 ENOG411EH7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0171600 protein,Os01g0171701 protein Q5VQL6,A0A0P0UYL1 Q5VQL6_ORYSJ,A0A0P0UYL1_ORYSJ P0583G08.22 Os01g0171600 OSNPB_010171600,Os01g0171701 OSNPB_010171701 ENOG411EH7Y nimin-1b Q9FNY8 Q9FNY8_ARATH At4g01895 (NIMIN-1b protein) (Systemic acquired resistance (SAR) regulator protein NIMIN-1-like protein) 16663 At4g01895 (NIMIN-1b protein) (Systemic acquired resistance (SAR) regulator protein NIMIN-1-like protein) regulation of systemic acquired resistance [GO:0010112]; regulation of transcription, DNA-templated [GO:0006355] locus:505006425; AT4G01895 systemic acquired resistance (SAR) regulator protein NA NA NA NA NA NA NA ENOG411EH7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLDc NA NA NA NA NA NA NA ENOG411EH7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family NA NA NA NA NA NA NA ENOG411EH7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: AHNAK nucleoprotein NA NA NA NA NA NA NA ENOG411EH7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EH7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EH7M Q8S8G5,A0A1P8AZR0,A0A1P8AZQ5 Q8S8G5_ARATH,A0A1P8AZR0_ARATH,A0A1P8AZQ5_ARATH Expressed protein,Uncharacterized protein 14656,8342,9352 Expressed protein,Uncharacterized protein locus:505006319; AT2G46375 NA NA NA NA NA NA NA NA ENOG411EH7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Branched-chain amino acid transport system / permease component NA NA NA NA NA NA NA ENOG411EH7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EH7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7E Q1G3B1,F4IXJ9 Q1G3B1_ARATH,F4IXJ9_ARATH Transmembrane protein 7518,7268 Transmembrane protein integral component of membrane [GO:0016021] locus:4010713765;,locus:6530298200; AT3G21352,AT3G21351 NA NA NA NA NA NA NA NA ENOG411EH7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EB49 Q9C6L0 Q9C6L0_ARATH At1g25400 (Transmembrane protein) (Uncharacterized protein F2J7.13) 31875 At1g25400 (Transmembrane protein) (Uncharacterized protein F2J7.13) integral component of membrane [GO:0016021] locus:2031220; AT1G25400 NA NA NA NA NA NA NA NA ENOG411EB48 Q9LW09 DRL22_ARATH Putative disease resistance protein At3g15700 FUNCTION: Potential disease resistance protein. {ECO:0000250}. 42352 Putative disease resistance protein At3g15700 ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952] locus:2093192; AT3G15700 NACHT domain NA NA NA NA NA NA NA ENOG411EB40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thiamine pyrophosphate enzyme N-terminal TPP binding domain NA NA NA NA NA NA NA ENOG411EB47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family NA NA NA NA NA NA NA ENOG411EB46 CAT3 Q42547,B9DG18,A0A1P8AWT7,A0A1P8AWR0,F4HUL6,Q2V4M4 CATA3_ARATH,B9DG18_ARATH,A0A1P8AWT7_ARATH,A0A1P8AWR0_ARATH,F4HUL6_ARATH,Q2V4M4_ARATH Catalase-3 (EC 1.11.1.6),AT1G20620 protein (Catalase 3),Catalase 3 FUNCTION: Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. R-ATH-3299685;R-ATH-6798695; 1.11.1.6 56695,55968,63560,35925,48899,43949 Catalase-3 (EC 1.11.1.6),AT1G20620 protein (Catalase 3),Catalase 3 apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; catalase activity [GO:0004096]; cobalt ion binding [GO:0050897]; heme binding [GO:0020037]; mRNA binding [GO:0003729]; cellular response to nitrogen starvation [GO:0006995]; cellular response to phosphate starvation [GO:0016036]; cellular response to sulfate starvation [GO:0009970]; hydrogen peroxide catabolic process [GO:0042744]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to hydrogen peroxide [GO:0042542]; response to light stimulus [GO:0009416],catalase activity [GO:0004096]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; response to oxidative stress [GO:0006979],integral component of membrane [GO:0016021]; catalase activity [GO:0004096]; heme binding [GO:0020037]; response to oxidative stress [GO:0006979],catalase activity [GO:0004096]; heme binding [GO:0020037]; response to oxidative stress [GO:0006979] locus:2034357; AT1G20620 cat3 sen2 atcat3 cat3 (catalase 3) NA NA NA NA NA NA NA ENOG411EB4Y Q8L7G9,A0A1P8B5I7,A8MRQ8 Q8L7G9_ARATH,A0A1P8B5I7_ARATH,A8MRQ8_ARATH SBP (S-ribonuclease binding protein) family protein (Uncharacterized protein At4g17680),SBP (S-ribonuclease binding protein) family protein 35132,21287,27118 SBP (S-ribonuclease binding protein) family protein (Uncharacterized protein At4g17680),SBP (S-ribonuclease binding protein) family protein regulation of defense response [GO:0031347] locus:2129336; AT4G17680 RING NA NA NA NA NA NA NA ENOG411EB4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase NA NA NA NA NA NA NA ENOG411EB4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAP domain NA NA NA NA NA NA NA ENOG411ED50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EB4N Q9LYH0 BIG1D_ARATH Protein BIG GRAIN 1-like D FUNCTION: Involved in auxin transport. Regulator of the auxin signaling pathway. {ECO:0000250|UniProtKB:Q10R09}. 41032 Protein BIG GRAIN 1-like D plasma membrane [GO:0005886]; auxin transport [GO:0060918]; auxin-activated signaling pathway [GO:0009734]; circadian rhythm [GO:0007623]; positive regulation of auxin mediated signaling pathway [GO:0010929] locus:2143049; AT5G12050 NA NA NA NA NA NA NA NA ENOG411EB4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411ED56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os09g0268700 protein Q6H4T3 Q6H4T3_ORYSJ B1008E06.27 Os09g0268700 OSNPB_090268700 ENOG411EHJP ETC3,ETC1,CPL3 Q9M157,Q9LNI5,A0A1P8AQ13,A0A1P8AQ06,F4JHR9 ETC3_ARATH,ETC1_ARATH,A0A1P8AQ13_ARATH,A0A1P8AQ06_ARATH,F4JHR9_ARATH MYB-like transcription factor ETC3 (Protein CAPRICE-like MYB3) (Protein ENHANCER OF TRY AND CPC 3),MYB-like transcription factor ETC1 (Protein ENHANCER OF TRY AND CPC 1),Homeodomain-like superfamily protein,CAPRICE-like MYB3 DISRUPTION PHENOTYPE: Increased number or trichomes and reduced number of root hairs. {ECO:0000269|PubMed:18305006}. Increased trichome density; Abnormal root hairs-T. Wada-2008 FUNCTION: MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, including endoreplication, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. May have pleiotropic effects on flowering development and epidermal cell size through the regulation of endoreduplication. {ECO:0000269|PubMed:18305006}.,FUNCTION: MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. MISCELLANEOUS: Overexpression of ETC3 results in the suppression of trichomes and overproduction of root hairs, as observed for CPC, TRY, ETC1 and ETC2. {ECO:0000305|PubMed:18305006}.,MISCELLANEOUS: Overexpression of ETC1 results in the suppression of trichomes and overproduction of root hairs, as observed for CPC, TRY, ETC2 and ETC3. {ECO:0000305|PubMed:15063185}. 8743,9831,7010,7520,8614 MYB-like transcription factor ETC3 (Protein CAPRICE-like MYB3) (Protein ENHANCER OF TRY AND CPC 3),MYB-like transcription factor ETC1 (Protein ENHANCER OF TRY AND CPC 1),Homeodomain-like superfamily protein,CAPRICE-like MYB3 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; root hair cell differentiation [GO:0048765]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; negative regulation of trichome patterning [GO:1900033]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; root hair cell development [GO:0080147]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in leaf epidermal cells, stomate guard cells in leaves, cotyledons and hypocotyls, inflorescences, developing seeds and siliques. {ECO:0000269|PubMed:18305006}.,TISSUE SPECIFICITY: Expressed in developing trichomes and non-root hair cells. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. locus:2125008;,locus:2035287; AT4G01060,AT1G01380 enhancer of try and cpc 1 NA NA NA NA NA NA NA ENOG411EHJS Q1G3U2,A0A1P8AP54 Q1G3U2_ARATH,A0A1P8AP54_ARATH Transcription factor 13682,11554 Transcription factor protein dimerization activity [GO:0046983] locus:5019474618; AT1G23965 NA NA NA NA NA NA NA NA ENOG411ED5W Q9LXX3,Q9FGS3,Q9LQL5 FB328_ARATH,FB287_ARATH,FB30_ARATH Probable F-box protein At3g56670,Putative F-box protein At5g50220,Putative F-box protein At1g32420 26708,41564,34944 Probable F-box protein At3g56670,Putative F-box protein At5g50220,Putative F-box protein At1g32420 locus:2102584;,locus:2157757;,locus:2033739; AT3G56670,AT5G50220,AT1G32420 F-box associated domain NA NA NA NA NA NA NA ENOG411ED5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein Os01g0872900 protein (cDNA clone:002-111-B06, full insert sequence) Q0JHB5 Q0JHB5_ORYSJ Os01g0872900 Os01g0872900 OSNPB_010872900 ENOG411ED5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: pyridine nucleotide-disulphide oxidoreductase domain 2 NA NA NA NA NA NA NA ENOG411ED5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os11g0233900 protein (Os11g0234001 protein) (Fragment),Os12g0295900 protein C7J8F4,A0A0P0Y9K6 C7J8F4_ORYSJ,A0A0P0Y9K6_ORYSJ Os11g0233900 Os11g0234001 OSNPB_110234001,Os12g0295900 OSNPB_120295900 ENOG411ED5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0111400 protein,Os10g0326200 protein A3C1Y3,A0A0N7KRL2 A3C1Y3_ORYSJ,A0A0N7KRL2_ORYSJ Os10g0111400 OsJ_30509 OSNPB_100111400,Os10g0326200 OSNPB_100326200 ENOG411EHJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GCK domain NA NA NA NA NA NA NA ENOG411EHJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJC O80861 O80861_ARATH At3g04090 (Myosin-M heavy chain-like protein) (Uncharacterized protein At2g30960) 29864 At3g04090 (Myosin-M heavy chain-like protein) (Uncharacterized protein At2g30960) locus:2052821; AT2G30960 NA NA NA NA NA NA NA NA ENOG411DR3T A0A1P8AQC4,F4I0J1 A0A1P8AQC4_ARATH,F4I0J1_ARATH Nucleolar-like protein R-ATH-6791226; 103940,103642 Nucleolar-like protein small-subunit processome [GO:0032040],cytosol [GO:0005829]; Noc4p-Nop14p complex [GO:0030692]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA [GO:0030490] locus:2033240; AT1G69070 Nucleolar protein Os03g0598200 protein Q0DQG5 Q0DQG5_ORYSJ Os03g0598200 OSNPB_030598200 ENOG411DR3Q F4IHT0 F4IHT0_ARATH Pleckstrin homology (PH) and lipid-binding START domains-containing protein 83248 Pleckstrin homology (PH) and lipid-binding START domains-containing protein plasma membrane [GO:0005886]; lipid binding [GO:0008289] locus:2057547; AT2G28320 Protein of unknown function (DUF1336) Os10g0479800 protein (Fragment),Os01g0540800 protein Q0IWY0,A0A0P0V3S4 Q0IWY0_ORYSJ,A0A0P0V3S4_ORYSJ Os10g0479800 Os10g0479800 OSNPB_100479800,Os01g0540800 OSNPB_010540800 ENOG411EAXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) NA NA NA NA NA NA NA ENOG411DR3Y LAC7 Q9SR40,A0A178V5P5 LAC7_ARATH,A0A178V5P5_ARATH Laccase-7 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 7) (Diphenol oxidase 7) (Urishiol oxidase 7),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ARA:AT3G09220-MONOMER; 1.10.3.2 62403,51858 Laccase-7 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 7) (Diphenol oxidase 7) (Urishiol oxidase 7),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Predominantly expressed in tissues other than the inflorescence stem. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2083604; AT3G09220 Lignin degradation and detoxification of lignin-derived products (By similarity) Laccase-14 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 14) (Diphenol oxidase 14) (Urishiol oxidase 14),Laccase-24 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 24) (Diphenol oxidase 24) (Urishiol oxidase 24),Laccase-25 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 25) (Diphenol oxidase 25) (Urishiol oxidase 25),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) Q69L99,Q2QUN2,Q0IP28,A0A0P0Y8N9,A0A0P0Y9B1,A0A0P0Y8S2 LAC14_ORYSJ,LAC24_ORYSJ,LAC25_ORYSJ,A0A0P0Y8N9_ORYSJ,A0A0P0Y9B1_ORYSJ,A0A0P0Y8S2_ORYSJ LAC14 Os07g0101000 LOC_Os07g01110 B1026C12.14 OsJ_021873,LAC24 Os12g0258700 LOC_Os12g15680 OsJ_016843 OsJ_17624,LAC25 Os12g0259800 LOC_Os12g15920,Os12g0257600 OSNPB_120257600,Os12g0259800 OSNPB_120259800,Os12g0258700 OSNPB_120258700 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ENOG411EAXC Q9LRR5 DRL21_ARATH Putative disease resistance protein At3g14460 FUNCTION: Potential disease resistance protein. {ECO:0000250}. 158907 Putative disease resistance protein At3g14460 plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2091662; AT3G14460 NB-ARC domain NA NA NA NA NA NA NA ENOG411EAXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec7 domain NA NA NA NA NA NA NA ENOG411EF1R MBK20.19,MFB13.14 Q93XY2,Q9FLJ7 Q93XY2_ARATH,Q9FLJ7_ARATH Transmembrane protein (Uncharacterized protein At5g07730; MBK20.19),At5g61360 30094,24471 Transmembrane protein (Uncharacterized protein At5g07730; MBK20.19),At5g61360 integral component of membrane [GO:0016021] locus:2160379;,locus:2163173; AT5G07730,AT5G61360 NA NA NA NA NA NA NA NA ENOG411EF1V F4JK69 F4JK69_ARATH Kinase-like protein 28244 Kinase-like protein kinase activity [GO:0016301] locus:2130534; AT4G15650 NA NA NA NA NA NA NA NA ENOG411EF1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class Os06g0340833 protein,Os07g0464148 protein A0A0P0WWA1,A0A0P0X5Q7 A0A0P0WWA1_ORYSJ,A0A0P0X5Q7_ORYSJ Os06g0340833 OSNPB_060340833,Os07g0464148 OSNPB_070464148 ENOG411EF1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF1Y Q9C9T5,A0A1P8ANI4 Q9C9T5_ARATH,A0A1P8ANI4_ARATH Coiled-coil protein (Uncharacterized protein F25P22.19),Coiled-coil protein 21651,18516 Coiled-coil protein (Uncharacterized protein F25P22.19),Coiled-coil protein locus:2027824; AT1G73770 NA NA NA NA NA NA NA NA ENOG411EF1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EF1A AGL14 Q38838,A0A1P8B7Y6 AGL14_ARATH,A0A1P8B7Y6_ARATH Agamous-like MADS-box protein AGL14 (Protein XAANTAL 2),AGAMOUS-like 14 DISRUPTION PHENOTYPE: Retarded root growth, and altered root meristem size and stem-cell patterning (PubMed:24121311). Late flowering phenotype (PubMed:25636918). {ECO:0000269|PubMed:24121311, ECO:0000269|PubMed:25636918}. FUNCTION: Transcriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269|PubMed:24121311}. "MISCELLANEOUS: XAANTAL is the Mayan word for ""go slower"" in recognition of the retarded root growth phenotypes of xaantal mutants. {ECO:0000303|PubMed:24121311}.; MISCELLANEOUS: Plants over-expressing AGL14/XAL2 show early flowering phenotype and flowers have vegetative traits. {ECO:0000269|PubMed:25636918}." 25492,20821 Agamous-like MADS-box protein AGL14 (Protein XAANTAL 2),AGAMOUS-like 14 cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; flower development [GO:0009908]; maintenance of floral meristem identity [GO:0010076]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of auxin polar transport [GO:2000012]; regulation of root meristem growth [GO:0010082]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During floral transition, expressed very early at the flanks of the inflorescence meristem in the anlagens upon the transition to flowering Subsequently, expression levels increase in the first and second stages of the floral meristem and at stage 3, expression is restricted to the L1 and L2 layers. Later on, expressed in the gynoecium and stamen primordia at stage 6. {ECO:0000269|PubMed:25636918}. TISSUE SPECIFICITY: Preferentially expressed in roots (PubMed:7549482). Expressed in lateral root cap, root epidermis, root endodermis, columella of the root meristematic region, the vascular cylinder in differentiated zones of the primary root and in emerged lateral root primordia (PubMed:24121311). Expressed in pollen (PubMed:12949148). {ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:24121311, ECO:0000269|PubMed:7549482}. locus:2137070; AT4G11880 agamous-like MADS-box protein NA NA NA NA NA NA NA ENOG411EF1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EF1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAA transporter family NA NA NA NA NA NA NA ENOG411EF1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60Kd inner membrane protein NA NA NA NA NA NA NA ENOG411EF1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Z1A alpha zein protein NA NA NA NA NA NA NA ENOG411EF1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain OSJNBa0042D13.4 protein (OSJNBb0052B05.18 protein) (Os04g0259300 protein) Q7X6Y0 Q7X6Y0_ORYSJ Os04g0259300 OsJ_14060 OSJNBa0042D13.4 OSJNBb0052B05.18 OSNPB_040259300 ENOG411EF13 Q8GXV8 Q8GXV8_ARATH At4g23390 (NEP-interacting protein, putative (DUF239)) (Uncharacterized protein At4g23390/F16G20_90) 44875 At4g23390 (NEP-interacting protein, putative (DUF239)) (Uncharacterized protein At4g23390/F16G20_90) locus:2117929; AT4G23390 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EF10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0028M15.13 protein (Os04g0231400 protein) Q7XK74 Q7XK74_ORYSJ Os04g0231400 OsJ_13488 OSJNBa0028M15.13 OSNPB_040231400 ENOG411EF11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os08g0550700 protein (Putative auxin induced protein) Q6Z3I0 Q6Z3I0_ORYSJ Os08g0550700 OJ1479_B11.28 OsJ_28202 OSJNBb0011H15.4 OSNPB_080550700 ENOG411EF16 O22953 O22953_ARATH At2g34000 (RING domain protein) (RING/U-box superfamily protein) (Uncharacterized protein At2g34000) 16968 At2g34000 (RING domain protein) (RING/U-box superfamily protein) (Uncharacterized protein At2g34000) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2055435; AT2G34000 RING NA NA NA NA NA NA NA ENOG411EF17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF23 NA NA NA NA NA NA NA ENOG411EF14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: e3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411EF15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) Os01g0154200 protein Q5ZCE4 Q5ZCE4_ORYSJ Os01g0154200 OSNPB_010154200 P0011G08.1 P0030H07.43 ENOG411EF18 CDF4 O22967 CDF4_ARATH Cyclic dof factor 4 (Dof zinc finger protein DOF2.3) (AtDOF2.3) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}. 18927 Cyclic dof factor 4 (Dof zinc finger protein DOF2.3) (AtDOF2.3) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; negative regulation of stem cell population maintenance [GO:1902455]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. locus:2055506; AT2G34140 zinc finger NA NA NA NA NA NA NA ENOG411EF19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EI6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI6B Q9SZD2,F4JMT8 Q9SZD2_ARATH,F4JMT8_ARATH Glycine-rich protein (Glycine-rich protein like) (Putative glycine-rich protein) (Putative glycine-rich protein 5),Glycine-rich protein 13323,9914 Glycine-rich protein (Glycine-rich protein like) (Putative glycine-rich protein) (Putative glycine-rich protein 5),Glycine-rich protein locus:2119906; AT4G29020 glycine-rich protein NA NA NA NA NA NA NA ENOG411EI6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0303500 protein (Putative lycine-rich cell wall structural protein 1.0) (cDNA clone:001-207-A09, full insert sequence) (cDNA clone:006-206-F04, full insert sequence) Q6K5T4 Q6K5T4_ORYSJ Os02g0303500 Os02g0303500 OsJ_06383 OSNPB_020303500 P0477B05.30 ENOG411EI6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 family dimerisation domain Os12g0594600 protein (Skp1 family, dimerisation domain containing protein, expressed) (cDNA clone:J033031N08, full insert sequence),Os12g0595600 protein Q2QMR3,A0A0P0YC82 Q2QMR3_ORYSJ,A0A0P0YC82_ORYSJ LOC_Os12g40300 Os12g0594600 OsJ_36723 OSNPB_120594600,Os12g0595600 OSNPB_120595600 ENOG411EI6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: dual-specificity tyrosine-(Y)-phosphorylation regulated kinase NA NA NA NA NA NA NA ENOG411EI6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EI6G P27483 GRP1_ARATH Glycine-rich cell wall structural protein FUNCTION: Responsible for plasticity of the cell wall. {ECO:0000305}. 25028 Glycine-rich cell wall structural protein cell wall [GO:0005618]; extracellular region [GO:0005576]; cell wall organization [GO:0071555] AT3G17050 NA NA NA NA NA NA NA NA ENOG411EI6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein ycf15 (ORF 99) NA NA NA NA NA NA NA ENOG411EI6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EI6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Extensin NA NA NA NA NA NA NA ENOG411EI6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4F5 protein family NA NA NA NA NA NA NA ENOG411EI6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABA/WDS induced protein Os01g0959200 protein (Fragment) A0A0P0VD37 A0A0P0VD37_ORYSJ Os01g0959200 OSNPB_010959200 ENOG411EI6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0192550 protein A0A0P0X348 A0A0P0X348_ORYSJ Os07g0192550 OSNPB_070192550 ENOG411EI6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Family with sequence similarity 91 member A1 NA NA NA NA NA NA NA ENOG411EI6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fibroin heavy chain-like protein (Os02g0127100 protein),Os02g0127500 protein Q6Z2M1,Q6Z2L8 Q6Z2M1_ORYSJ,Q6Z2L8_ORYSJ Os02g0127100 OSNPB_020127100 P0482F12.22,Os02g0127500 OSNPB_020127500 P0482F12.26 ENOG411EI6X Q9LQP4,F4HYM3,A0A1P8AP82,A0A1P8APA1,A0A1P8APA6,A0A1P8APC0 Q9LQP4_ARATH,F4HYM3_ARATH,A0A1P8AP82_ARATH,A0A1P8APA1_ARATH,A0A1P8APA6_ARATH,A0A1P8APC0_ARATH F24B9.22 (Transmembrane protein),Transmembrane protein 18989,15646,22680,18947,22207,19462 F24B9.22 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2026520;,locus:2010970; AT1G07690,AT1G54950 NA NA NA NA NA NA NA NA ENOG411EI6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0490400 protein (Fragment) A0A0P0XHF8 A0A0P0XHF8_ORYSJ Os08g0490400 OSNPB_080490400 ENOG411EI6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CUE NA NA NA NA NA NA NA ENOG411EI62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0177200 protein) (cDNA, clone: J065043E02, full insert sequence) Q53PI7 Q53PI7_ORYSJ LOC_Os11g07580 Os11g0177200 OSNPB_110177200 ENOG411EI63 F4JQK2 F4JQK2_ARATH Thioredoxin superfamily protein 17271 Thioredoxin superfamily protein cell [GO:0005623]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; glycerol ether metabolic process [GO:0006662] locus:2139024; AT4G12170 Thioredoxin NA NA NA NA NA NA NA ENOG411EI64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EI65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE (OsARGOS) Q7X6L2 ARGOS_ORYSJ ARGOS Os04g0444300 LOC_Os04g36670 OSJNBa0027P08.2 OSJNBa0058G03.5 FUNCTION: Promotes both cell expansion and proliferation-dependent organ growth. {ECO:0000269|PubMed:19161943}. ENOG411EI66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EI67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0782850 protein (Fragment),Os02g0627750 protein A0A0P0V8Y3,A0A0P0VLY8 A0A0P0V8Y3_ORYSJ,A0A0P0VLY8_ORYSJ Os01g0782850 OSNPB_010782850,Os02g0627750 OSNPB_020627750 ENOG411EI68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411EI69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1110) Os01g0156400 protein,Os01g0156300 protein (cDNA clone:002-135-F10, full insert sequence) Q5ZCD4,Q5ZCD5 Q5ZCD4_ORYSJ,Q5ZCD5_ORYSJ P0011G08.28 Os01g0156400 OSNPB_010156400,Os01g0156300 Os01g0156300 OSNPB_010156300 P0011G08.27 ENOG411E6V1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA Os05g0155400 protein (Fragment) Q0DKL8 Q0DKL8_ORYSJ Os05g0155400 Os05g0155400 OSNPB_050155400 ENOG411E6V6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E6VX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os01g0811500 protein Q8RU89 Q8RU89_ORYSJ Os01g0811500 OSNPB_010811500 P0425G02.13 P0468B07.50 ENOG411E6VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0611300 protein (cDNA clone:001-102-H03, full insert sequence) (cDNA clone:001-105-A02, full insert sequence) (cDNA clone:001-110-B06, full insert sequence) (cDNA clone:J013078O07, full insert sequence) Q0JA86 Q0JA86_ORYSJ Os04g0611300 Os04g0611300 OSNPB_040611300 ENOG411E6VR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E6VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8G8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411E8G9 F4F15.340 Q9SUY2 Q9SUY2_ARATH AT3g52230/F4F15_340 (Uncharacterized protein F4F15.340) 16125 AT3g52230/F4F15_340 (Uncharacterized protein F4F15.340) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536] locus:2083805; AT3G52230 NA NA NA NA NA NA NA NA ENOG411E8G6 O81793 O81793_ARATH Uncharacterized protein AT4g35610 (Uncharacterized protein F8D20.120) (Zinc finger (C2H2 type) family protein) 28510 Uncharacterized protein AT4g35610 (Uncharacterized protein F8D20.120) (Zinc finger (C2H2 type) family protein) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2127933; AT4G35610 Inherit from KOG: Zinc finger protein NA NA NA NA NA NA NA ENOG411E8G7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0188500 protein (cDNA, clone: J100049L04, full insert sequence) B7FA68 B7FA68_ORYSJ Os04g0188500 OsJ_13938 OSNPB_040188500 ENOG411E8G4 F8F6_290 Q6NN03,Q9LZA2,F4KI52 Q6NN03_ARATH,Q9LZA2_ARATH,F4KI52_ARATH At5g04080 (Cysteine-rich TM module stress tolerance protein),Cysteine-rich TM module stress tolerance protein (Uncharacterized protein F8F6_290),Cysteine-rich TM module stress tolerance protein 7322,5738,5421 At5g04080 (Cysteine-rich TM module stress tolerance protein),Cysteine-rich TM module stress tolerance protein (Uncharacterized protein F8F6_290),Cysteine-rich TM module stress tolerance protein plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006] locus:2150685; AT5G04080 NA Os01g0948600 protein (Fragment) A0A0P0VCU9 A0A0P0VCU9_ORYSJ Os01g0948600 OSNPB_010948600 ENOG411E8G2 Q84K42 Q84K42_ARATH Uncharacterized protein At1g68500 10355 Uncharacterized protein At1g68500 locus:2201257; AT1G68500 NA NA NA NA NA NA NA NA ENOG411E8G3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Thylakoid lumenal 16.5 kDa protein NA NA NA NA NA NA NA ENOG411E8G0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8G1 Q8L6X8 Q8L6X8_ARATH Aspartic/glutamic acid-rich protein (At5g17160) (Uncharacterized protein At5g17160) 62614 Aspartic/glutamic acid-rich protein (At5g17160) (Uncharacterized protein At5g17160) locus:2148176; AT5G17160 NA Os07g0166500 protein,Os02g0699500 protein (Fragment),Os02g0699433 protein (Fragment),Os02g0699466 protein (Fragment) Q7F0P6,Q0DYE3,A0A0P0VNB9,A0A0P0VNP0 Q7F0P6_ORYSJ,Q0DYE3_ORYSJ,A0A0P0VNB9_ORYSJ,A0A0P0VNP0_ORYSJ P0039H02.135 OJ1641_C04.119 Os07g0166500 OSNPB_070166500,Os02g0699500 Os02g0699500 OSNPB_020699500,Os02g0699433 OSNPB_020699433,Os02g0699466 OSNPB_020699466 ENOG411E8GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8GX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0172100 protein) (cDNA clone:J023110J24, full insert sequence) Q10R43 Q10R43_ORYSJ Os03g0172100 LOC_Os03g07590 Os03g0172100 OsJ_09595 OSNPB_030172100 ENOG411E8GY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8GV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8GW Q9C5J5,Q8LAM7 Q9C5J5_ARATH,Q8LAM7_ARATH Uncharacterized protein At1g19010,Uncharacterized protein 35993,32862 Uncharacterized protein At1g19010,Uncharacterized protein locus:2011231; AT1G19010 NA NA NA NA NA NA NA NA ENOG411E8GT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0127600 protein Q0DEZ3 Q0DEZ3_ORYSJ Os06g0127600 Os06g0127600 OsJ_19966 OSNPB_060127600 ENOG411E8GR Q9LU24,Q4PT11,Q9ZVM6 FB145_ARATH,Q4PT11_ARATH,Q9ZVM6_ARATH Putative F-box protein At3g16210,F-box associated ubiquitination effector family protein (F-box family protein-related),F-box family protein-like protein (T22H22.8) 42403,34078,28224 Putative F-box protein At3g16210,F-box associated ubiquitination effector family protein (F-box family protein-related),F-box family protein-like protein (T22H22.8) ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2094947;,locus:2035634;,locus:2199523; AT3G16210,AT1G32600,AT1G54640 F-box domain NA NA NA NA NA NA NA ENOG411E8GS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0167600 protein (cDNA clone:001-027-G05, full insert sequence),Os05g0168200 protein (cDNA clone:006-306-F04, full insert sequence) Q60DU5,Q60DU3 Q60DU5_ORYSJ,Q60DU3_ORYSJ Os05g0167600 OSJNBa0086E02.10 OSNPB_050167600,Os05g0168200 OSJNBa0086E02.12 OSNPB_050168200 ENOG411E8GP O04643 O04643_ARATH F2P16.13 protein 19330 F2P16.13 protein locus:2148563; AT5G27020 NA NA NA NA NA NA NA NA ENOG411E8GQ Q5BPM7 Q5BPM7_ARATH Expressed protein 14027 Expressed protein plasma membrane [GO:0005886] locus:2080467; AT3G59880 NA NA NA NA NA NA NA NA ENOG411E8GN O80637 O80637_ARATH At2g39500/F12L6.16 (Expressed protein) (Hexose transporter) 6559 At2g39500/F12L6.16 (Expressed protein) (Hexose transporter) integral component of membrane [GO:0016021] locus:2039777; AT2G39500 NA NA NA NA NA NA NA NA ENOG411E8GM rpl32 P61847 RK32_ARATH 50S ribosomal protein L32, chloroplastic 6061 50S ribosomal protein L32, chloroplastic chloroplast [GO:0009507]; large ribosomal subunit [GO:0015934]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954725; ATCG01020 50S ribosomal protein L32 chloroplastic NA NA NA NA NA NA NA ENOG411E8GJ PSBT,PSBTN Q39195,A0A1I9LS90 PST2_ARATH,A0A1I9LS90_ARATH Photosystem II 5 kDa protein, chloroplastic (PSII-T) (Nuclear encoded psbT) (PsbTn),Photosystem II subunit T FUNCTION: May be a component of the oxygen-evolving complex. 11028,15633 Photosystem II 5 kDa protein, chloroplastic (PSII-T) (Nuclear encoded psbT) (PsbTn),Photosystem II subunit T chloroplast thylakoid membrane [GO:0009535]; photosystem II [GO:0009523]; photosynthesis [GO:0015979] locus:505006359; AT3G21055 photosystem II NA NA NA NA NA NA NA ENOG411E8GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0592900 protein) (cDNA clone:001-125-F07, full insert sequence) (cDNA clone:002-188-E08, full insert sequence) Q2QMS6 Q2QMS6_ORYSJ LOC_Os12g40180 Os12g0592900 OSNPB_120592900 ENOG411E8GH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0248500 protein (cDNA, clone: J100072G22, full insert sequence) Q10P36 Q10P36_ORYSJ LOC_Os03g14440 Os03g0248500 OsJ_10140 OSNPB_030248500 ENOG411E8GI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar fermentation stimulation protein NA NA NA NA NA NA NA ENOG411E8GF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8GG Q9LVE9 Q9LVE9_ARATH At3g21570 (Proline-rich nuclear receptor coactivator) 15562 At3g21570 (Proline-rich nuclear receptor coactivator) locus:2089895; AT3G21570 NA NA NA NA NA NA NA NA ENOG411E8GD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8GE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8GB GATA29 Q9LT45 GAT29_ARATH GATA transcription factor 29 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 23131 GATA transcription factor 29 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2091886; AT3G20750 zinc finger (GATA type) family protein NA NA NA NA NA NA NA ENOG411E8GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8GA SCRL9,SCRL11,SCRL10 P82628,P82630,P82629 DF243_ARATH,DF244_ARATH,DF242_ARATH Putative defensin-like protein 243 (Putative S locus cysteine-rich-like protein 9) (Protein SCRL9) (SCR-like protein 9),Putative defensin-like protein 244 (Putative S locus cysteine-rich-like protein 11) (Protein SCRL11) (SCR-like protein 11),Defensin-like protein 242 (S locus cysteine-rich-like protein 10) (Protein SCRL10) (SCR-like protein 10) 10273,9391,11909 Putative defensin-like protein 243 (Putative S locus cysteine-rich-like protein 9) (Protein SCRL9) (SCR-like protein 9),Putative defensin-like protein 244 (Putative S locus cysteine-rich-like protein 11) (Protein SCRL11) (SCR-like protein 11),Defensin-like protein 242 (S locus cysteine-rich-like protein 10) (Protein SCRL10) (SCR-like protein 10) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640]; signal transduction [GO:0007165] locus:1009023155;,locus:1009023356;,locus:1006230335; AT2G05117,AT4G15733,AT4G15735 NA NA NA NA NA NA NA NA ENOG411EADB MLO10,MLO7 Q9FKY5,O22752,A0A1P8BEY7 MLO10_ARATH,MLO7_ARATH,A0A1P8BEY7_ARATH MLO-like protein 10 (AtMlo10),MLO-like protein 7 (AtMlo7) (Protein NORTIA),MLO-like protein DISRUPTION PHENOTYPE: Impaired pollen tube reception in the female gametophyte synergids; the pollen tube fails to arrest and continues to grow inside the female gametophyte. {ECO:0000269|PubMed:21071669}. female gametophytic defects; reduced fertility and pollen tube overgrowth in the synergids; Female gametophyte defective; Homozygotes are viable: Reduced fertility-U. Grossniklaus-2010 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}.,FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). Controls pollen tube reception in the female gametophyte synergids. {ECO:0000250, ECO:0000269|PubMed:21071669}.,FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. 64483,62112,54921 MLO-like protein 10 (AtMlo10),MLO-like protein 7 (AtMlo7) (Protein NORTIA),MLO-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607],cytoplasm [GO:0005737]; endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; pollen tube reception [GO:0010483]; response to biotic stimulus [GO:0009607],integral component of membrane [GO:0016021]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] TISSUE SPECIFICITY: Restricted to pollen, synergids, pistils and immature anthers. Also detected in seedlings, leaves, stems and inflorescens. {ECO:0000269|PubMed:16525893, ECO:0000269|PubMed:21071669}. locus:2156837;,locus:2827607; AT5G65970,AT2G17430 May be involved in modulation of pathogen defense and leaf cell death NA NA NA NA NA NA NA ENOG411EADC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EADA O80826,F4JL03 O80826_ARATH,F4JL03_ARATH Expressed protein (Uncharacterized protein At2g45930),Uncharacterized protein 26951,30335 Expressed protein (Uncharacterized protein At2g45930),Uncharacterized protein locus:2050745;,locus:2130030; AT2G45930,AT4G16090 NA NA NA NA NA NA NA NA ENOG411EADF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EADG LECRK110 Q3E884 LK110_ARATH Putative L-type lectin-domain containing receptor kinase I.10 (LecRK-I.10) (EC 2.7.11.1) 2.7.11.1 68667 Putative L-type lectin-domain containing receptor kinase I.10 (LecRK-I.10) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674] locus:2144055; AT5G60310 lectin protein kinase family NA NA NA NA NA NA NA ENOG411EADD Q9LTC9,Q9LTD0 Q9LTC9_ARATH,Q9LTD0_ARATH At3g23190 (HR-like lesion-inducing protein) (HR-like lesion-inducing protein-like protein),HR-like lesion-inducing protein (HR-like lesion-inducing protein-like protein) 24496,25219 At3g23190 (HR-like lesion-inducing protein) (HR-like lesion-inducing protein-like protein),HR-like lesion-inducing protein (HR-like lesion-inducing protein-like protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2086248;,locus:2086238; AT3G23190,AT3G23180 HR-like lesion-inducing NA NA NA NA NA NA NA ENOG411EADE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: trafficking protein particle complex 9 NA NA NA NA NA NA NA ENOG411EADJ WAKL21 Q8GYF5 WAKLR_ARATH Wall-associated receptor kinase-like 21 (EC 2.7.11.-) FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. 2.7.11.- 69270 Wall-associated receptor kinase-like 21 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2174994; AT5G66790 STYKc NA NA NA NA NA NA NA ENOG411EADK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0605900 protein,Os11g0605600 protein Q0IRQ7,A0A0N7KT70 Q0IRQ7_ORYSJ,A0A0N7KT70_ORYSJ Os11g0605900 OSNPB_110605900,Os11g0605600 OSNPB_110605600 ENOG411EADH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class I (W and Y) Os04g0680550 protein,Os02g0722001 protein A0A0P0WGE6,A0A0P0VP63 A0A0P0WGE6_ORYSJ,A0A0P0VP63_ORYSJ Os04g0680550 OSNPB_040680550,Os02g0722001 OSNPB_020722001 ENOG411EADI ATMYB95,MYB95 Q9SG63,A0A1P8APC6 Q9SG63_ARATH,A0A1P8APC6_ARATH At1g74430 (MYB transcription factor) (Myb domain protein 95) (Putative MYB family transcription factor; 31729-33438) (Putative transcription factor) (Putative transcription factor MYB95),Myb domain protein 95 30650,22666 At1g74430 (MYB transcription factor) (Myb domain protein 95) (Putative MYB family transcription factor; 31729-33438) (Putative transcription factor) (Putative transcription factor MYB95),Myb domain protein 95 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751],DNA binding [GO:0003677] locus:2019125; AT1G74430 MYB95 ATMYB95 ATMYBCP66 MYB95 (myb domain protein 95) NA NA NA NA NA NA NA ENOG411EADN APRR4 Q9FJ16 APRR4_ARATH Putative two-component response regulator-like APRR4 (Pseudo-response regulator 4) FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. 33818 Putative two-component response regulator-like APRR4 (Pseudo-response regulator 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; phosphorelay signal transduction system [GO:0000160]; transcription, DNA-templated [GO:0006351] locus:2155954; AT5G49240 REC NA NA NA NA NA NA NA ENOG411EADM Q9S9L3 Q9S9L3_ARATH F26C17.2 protein (mRNA capping enzyme family protein) R-ATH-72086;R-ATH-77075; 73831 F26C17.2 protein (mRNA capping enzyme family protein) nucleus [GO:0005634]; mRNA guanylyltransferase activity [GO:0004484]; polynucleotide 5'-phosphatase activity [GO:0004651]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; 7-methylguanosine mRNA capping [GO:0006370] locus:2147575; AT5G28210 mRNA capping enzyme catalytic domain NA NA NA NA NA NA NA ENOG411EADR Q9M0E6 FBK90_ARATH F-box/kelch-repeat protein At4g29370 43625 F-box/kelch-repeat protein At4g29370 locus:2118349; AT4G29370 kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EADS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjC NA NA NA NA NA NA NA ENOG411EADP F26O13.40 Q9SD09 Q9SD09_ARATH At3g51400 (Uncharacterized protein F26O13.40) 31661 At3g51400 (Uncharacterized protein F26O13.40) locus:2081800; AT3G51400 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411EADQ LLP Q9LZF5 LECT6_ARATH Lectin-like protein (Apoplastic EDS1-dependent protein 9) (SA-induced legume lectin-like protein 1) FUNCTION: Plays a positive role in the effector-triggered immunity (ETI) response (PubMed:19199050, PubMed:24006883). Involved in salicylic acid (SA)-mediated processes occurring in ETI response, but is not involved in the autophagy process (PubMed:24006883). Promotes systemic rather than local immunity (PubMed:24755512). Essential for systemic acquired resistance (SAR), but not necessary for immune signaling downstream of SA (PubMed:24755512). May act in parallel with SA (PubMed:24755512). {ECO:0000269|PubMed:19199050, ECO:0000269|PubMed:24006883, ECO:0000269|PubMed:24755512}. 30162 Lectin-like protein (Apoplastic EDS1-dependent protein 9) (SA-induced legume lectin-like protein 1) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; plasma membrane [GO:0005886]; carbohydrate binding [GO:0030246]; kinase activity [GO:0016301]; cellular response to salicylic acid stimulus [GO:0071446]; systemic acquired resistance [GO:0009627] TISSUE SPECIFICITY: Expressed in seedlings and leaves of adult plants. {ECO:0000269|PubMed:24006883}. locus:2142679; AT5G03350 Legume lectin domain NA NA NA NA NA NA NA ENOG411EADV NIP1 Q1PF53 Q1PF53_ARATH NEP-interacting protein 1 45210 NEP-interacting protein 1 chloroplast thylakoid membrane [GO:0009535]; integral component of plastid membrane [GO:0031351]; response to light stimulus [GO:0009416] locus:2827901; AT2G17750 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EADW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411EADT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EADU ZED1 Q8LGB6 ZED1_ARATH Non-functional pseudokinase ZED1 (Protein HOPZ-ETI-DEFICIENT 1) FUNCTION: Probable non-functional pseudokinase required for recognition of the Pseudomonas syringae type III effector HopZ1a by ZAR1. May function as a decoy to trap HopZ1a in the ZAR1 complex for recognition by the plant immune system. {ECO:0000269|PubMed:24170858}. 37957 Non-functional pseudokinase ZED1 (Protein HOPZ-ETI-DEFICIENT 1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952] locus:2076646; AT3G57750 STYKc NA NA NA NA NA NA NA ENOG411EADZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0536501 protein (Os01g0536600 protein),Os01g0536950 protein,Os12g0124100 protein (Fragment),Os05g0305600 protein Q0JM52,A0A0P0V3N2,A0A0P0Y6H3,A0A0P0WKE4 Q0JM52_ORYSJ,A0A0P0V3N2_ORYSJ,A0A0P0Y6H3_ORYSJ,A0A0P0WKE4_ORYSJ Os01g0536501 Os01g0536600 OSNPB_010536501,Os01g0536950 OSNPB_010536950,Os12g0124100 OSNPB_120124100,Os05g0305600 OSNPB_050305600 ENOG411EADX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EADY Q6DBE5,O80702,O80704,O80705 Q6DBE5_ARATH,O80702_ARATH,O80704_ARATH,O80705_ARATH At1g62120 (Mitochondrial transcription termination factor family protein),At1g61970 (F8K4.16 protein) (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At1g61970),At1g61990/F8K4_18 (F8K4.18 protein) (Mitochondrial transcription termination factor family protein),F8K4.20 protein (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At1g62010) (Uncharacterized protein At1g62010/F8K4_20) 48940,46952,46248,46439 At1g62120 (Mitochondrial transcription termination factor family protein),At1g61970 (F8K4.16 protein) (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At1g61970),At1g61990/F8K4_18 (F8K4.18 protein) (Mitochondrial transcription termination factor family protein),F8K4.20 protein (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At1g62010) (Uncharacterized protein At1g62010/F8K4_20) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2018057;,locus:2036858;,locus:2036878;,locus:2036813; AT1G62120,AT1G61970,AT1G61990,AT1G62010 mTERF NA NA NA NA NA NA NA ENOG411EAD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain NA NA NA NA NA NA NA ENOG411EAD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA anthocyanidin 53-O-glucosyltransferase-like NA NA NA NA NA NA NA ENOG411EAD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EXOIII NA NA NA NA NA NA NA ENOG411EAD6 LBD42 Q9CA30 LBD42_ARATH LOB domain-containing protein 42 (ASYMMETRIC LEAVES 2-like protein 36) (AS2-like protein 36) 25543 LOB domain-containing protein 42 (ASYMMETRIC LEAVES 2-like protein 36) (AS2-like protein 36) locus:2201267; AT1G68510 LOB domain-containing protein 42 NA NA NA NA NA NA NA ENOG411EAD7 CYP702A1,CYP702A5,dl3695c,CYP702A6,CYP702A2 Q1PFG4,Q8L7C0,O23384,F4JK32,A8MS53,A0A1P8B7W6,A0A1P8B7X1,A0A1P8B7V1,A0A1P8B5L5,A8MSB6,A0A1P8B5L1 Q1PFG4_ARATH,Q8L7C0_ARATH,O23384_ARATH,F4JK32_ARATH,A8MS53_ARATH,A0A1P8B7W6_ARATH,A0A1P8B7X1_ARATH,A0A1P8B7V1_ARATH,A0A1P8B5L5_ARATH,A8MSB6_ARATH,A0A1P8B5L1_ARATH Cytochrome P450 family protein (Cytochrome P450, family 702, subfamily A, polypeptide 1),Cytochrome P450, family 702, subfamily A, polypeptide 5,Cytochrome P450 like protein (Cytochrome P450, family 702, subfamily A, polypeptide 2),Cytochrome P450, family 702, subfamily A, polypeptide 6,Cytochrome P450, family 702, subfamily A, polypeptide 2 ARA:AT1G65670-MONOMER;,ARA:AT4G15300-MONOMER;,ARA:AT4G15393-MONOMER; R-ATH-211916;R-ATH-5365859; 55128,45921,56273,54473,53703,52057,52710,46149,54783,42166,53583 Cytochrome P450 family protein (Cytochrome P450, family 702, subfamily A, polypeptide 1),Cytochrome P450, family 702, subfamily A, polypeptide 5,Cytochrome P450 like protein (Cytochrome P450, family 702, subfamily A, polypeptide 2),Cytochrome P450, family 702, subfamily A, polypeptide 6,Cytochrome P450, family 702, subfamily A, polypeptide 2 endoplasmic reticulum [GO:0005783]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2018511;,locus:2129925;,locus:504955443;,locus:504955449; AT1G65670,AT4G15393,AT4G15300,AT4G15396 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EAD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: fat mass and obesity associated NA NA NA NA NA NA NA ENOG411EAD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MO25-like protein At5g47540-like NA NA NA NA NA NA NA ENOG411EAD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EAD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sigma-54 interaction domain NA NA NA NA NA NA NA ENOG411DQMV Q940A2,A0A1P8B342,A0A1P8B331,A0A1P8B344 P2C31_ARATH,A0A1P8B342_ARATH,A0A1P8B331_ARATH,A0A1P8B344_ARATH Protein kinase and PP2C-like domain-containing protein [Includes: Probable serine/threonine protein kinase At2g40860 (EC 2.7.11.1); Probable protein phosphatase 2C 31 (AtPP2C31) (EC 3.1.3.16)],Protein kinase family protein / protein phosphatase 2C (PP2C) family protein 2.7.11.1; 3.1.3.16 72853,67793,62244,70493 Protein kinase and PP2C-like domain-containing protein [Includes: Probable serine/threonine protein kinase At2g40860 (EC 2.7.11.1); Probable protein phosphatase 2C 31 (AtPP2C31) (EC 3.1.3.16)],Protein kinase family protein / protein phosphatase 2C (PP2C) family protein intracellular [GO:0005622]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2058495; AT2G40860 protein kinase and PP2C-like domain-containing Protein kinase and PP2C-like domain-containing protein [Includes: Probable serine/threonine-protein kinase Os01g0541900 (EC 2.7.11.1); Probable protein phosphatase 2C 4 (OsPP2C04) (EC 3.1.3.16)] Q5JJY4 P2C04_ORYSJ Os01g0541900 LOC_Os01g36080 OSJNBa0062A24.20 ENOG411DQMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0379800 protein Q0JDT0 Q0JDT0_ORYSJ Os04g0379800 Os04g0379800 OsJ_14515 OSNPB_040379800 ENOG411DQMT Q9C5G2,F4HZI7,F4HZI8,F4HZI6 Q9C5G2_ARATH,F4HZI7_ARATH,F4HZI8_ARATH,F4HZI6_ARATH Protein-protein interaction regulator family protein (Uncharacterized protein At1g15200),Protein-protein interaction regulator family protein 48905,51279,54446,49435 Protein-protein interaction regulator family protein (Uncharacterized protein At1g15200),Protein-protein interaction regulator family protein catalytic step 2 spliceosome [GO:0071013]; cell-cell junction [GO:0005911]; exon-exon junction complex [GO:0035145]; cell adhesion [GO:0007155] locus:2037688; AT1G15200 Pinin SDK memA protein Expressed protein (Expressed protein (With alternative splicing)) (Os03g0701900 protein) (Pinin/SDK/memA/ protein conserved region containing protein, expressed) (cDNA clone:J013151C08, full insert sequence) Q75I81 Q75I81_ORYSJ OSJNBa0004L11.25 LOC_Os03g49520 Os03g0701900 OSNPB_030701900 ENOG411DQMU AATP1 Q9LH84,Q9LJJ7,Q9LH82,Q9LH83,Q9FLD5,Q9LJJ9,A0A1I9LTM0 AATP5_ARATH,AATP9_ARATH,AATP7_ARATH,AATP6_ARATH,ASD_ARATH,Q9LJJ9_ARATH,A0A1I9LTM0_ARATH AAA-ATPase At3g28510 (EC 3.6.1.3),AAA-ATPase At3g28580 (EC 3.6.1.3),AAA-ATPase At3g28540 (EC 3.6.1.3),AAA-ATPase At3g28520 (EC 3.6.1.3),AAA-ATPase ASD, mitochondrial (EC 3.6.1.3) (AAA-ATPase 1) (Protein ATPASE-IN-SEED-DEVELOPMENT),BCS1 AAA-type ATPase,P-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Required to regulate morphology and anatomy during seed maturation. {ECO:0000269|PubMed:21359673}. 3.6.1.3 61557,58509,59151,57108,60348,30672,56119 AAA-ATPase At3g28510 (EC 3.6.1.3),AAA-ATPase At3g28580 (EC 3.6.1.3),AAA-ATPase At3g28540 (EC 3.6.1.3),AAA-ATPase At3g28520 (EC 3.6.1.3),AAA-ATPase ASD, mitochondrial (EC 3.6.1.3) (AAA-ATPase 1) (Protein ATPASE-IN-SEED-DEVELOPMENT),BCS1 AAA-type ATPase,P-loop containing nucleoside triphosphate hydrolases superfamily protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; response to abscisic acid [GO:0009737]; response to singlet oxygen [GO:0000304],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; fruit development [GO:0010154]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; seed maturation [GO:0010431],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787] DEVELOPMENTAL STAGE: Accumulates gradually in the embryo during the seed development to reach high levels in mature seeds, but repressed rapidly in germinating seeds. {ECO:0000269|PubMed:21359673}. TISSUE SPECIFICITY: Expressed in seeds, sepcifically in the embryo. {ECO:0000269|PubMed:21359673}. locus:2098658;,locus:2095512;,locus:2098648;,locus:2098638;,locus:2178067;,locus:2095467; AT3G28510,AT3G28580,AT3G28540,AT3G28520,AT5G40010,AT3G28560 AAA-type ATPase family protein Os12g0431100 protein (Fragment),Os12g0470700 protein,ATPase 3, putative, expressed (Os12g0639200 protein),Cell Division Protein AAA ATPase family, putative, expressed (Os12g0471100 protein),Os12g0467700 protein (Os12g0468000 protein) (Fragment),ATPase, AAA family protein (ATPase, AAA family protein, expressed) (Os12g0467700 protein) (Os12g0468000 protein),Os12g0472300 protein Q0INL8,C7J9G8,Q2QLK2,Q2QR70,A0A0P0Y9Y5,Q2QRB1,A0A0P0YAB8 Q0INL8_ORYSJ,C7J9G8_ORYSJ,Q2QLK2_ORYSJ,Q2QR70_ORYSJ,A0A0P0Y9Y5_ORYSJ,Q2QRB1_ORYSJ,A0A0P0YAB8_ORYSJ Os12g0431100 Os12g0431100 OSNPB_120431100,Os12g0470700 Os12g0470700 OSNPB_120470700,Os12g0639200 LOC_Os12g44190 Os12g0639200 OSNPB_120639200,LOC_Os12g28590 Os12g0471100 OSNPB_120471100,Os12g0467700 Os12g0468000 OSNPB_120467700 OSNPB_120468000,Os12g0468000 LOC_Os12g28137 LOC_Os12g28177 Os12g0467700 OSNPB_120467700 OSNPB_120468000,Os12g0472300 OSNPB_120472300 ENOG411DQMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carotenoid 910(9'10')-cleavage dioxygenase 1-like Os08g0371200 protein,Os06g0162550 protein,Os08g0369800 protein (Fragment),Os09g0321200 protein,Os08g0371608 protein (Fragment) Q6Z2Q8,A0A0P0WT80,A0A0P0XFB0,A0A0P0XLA9,A0A0P0XF96 Q6Z2Q8_ORYSJ,A0A0P0WT80_ORYSJ,A0A0P0XFB0_ORYSJ,A0A0P0XLA9_ORYSJ,A0A0P0XF96_ORYSJ Os08g0371200 Os08g0371200 OJ1770_H03.44 OSNPB_080371200,Os06g0162550 OSNPB_060162550,Os08g0369800 OSNPB_080369800,Os09g0321200 OSNPB_090321200,Os08g0371608 OSNPB_080371608 ENOG411DQMS TIM44-1,TIM44-2 Q1PF33,Q5XF06,A0A1P8B2X6,A0A1P8B2U3 TI441_ARATH,TI442_ARATH,A0A1P8B2X6_ARATH,A0A1P8B2U3_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1,Mitochondrial import inner membrane translocase subunit TIM44-2,Translocase inner membrane subunit 44-1 FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. Recruits mitochondrial HSP70 to drive protein translocation into the matrix using ATP as an energy source (By similarity). {ECO:0000250}. 54299,53646,58378,48155 Mitochondrial import inner membrane translocase subunit TIM44-1,Mitochondrial import inner membrane translocase subunit TIM44-2,Translocase inner membrane subunit 44-1 mitochondrial inner membrane presequence translocase complex [GO:0005744]; ATPase-coupled protein transmembrane transporter activity [GO:0015462]; chaperone binding [GO:0051087]; protein import into mitochondrial matrix [GO:0030150]; protein targeting to mitochondrion [GO:0006626],mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrion [GO:0005739]; ATPase-coupled protein transmembrane transporter activity [GO:0015462]; chaperone binding [GO:0051087]; protein import into mitochondrial matrix [GO:0030150]; protein targeting to mitochondrion [GO:0006626] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2054759;,locus:2039195; AT2G20510,AT2G36070 Mitochondrial import inner membrane translocase subunit Mitochondrial inner membrane translocating protein-like protein (Os07g0409700 protein) (cDNA clone:J013040N20, full insert sequence) (cDNA clone:J023006L22, full insert sequence) Q69V11 Q69V11_ORYSJ P0492E07.122 Os07g0409700 OsJ_23936 OSNPB_070409700 ENOG411DQMP WBC30,ABCG24,ABCG28 Q9SJK6,Q9MAG3,Q9FF46 WBC30_ARATH,AB24G_ARATH,AB28G_ARATH Putative white-brown complex homolog protein 30 (Putative non-intrinsic ABC protein 12) (WBC-related protein 1),ABC transporter G family member 24 (ABC transporter ABCG.24) (AtABCG24) (Probable white-brown complex homolog protein 25) (AtWBC25),ABC transporter G family member 28 (ABC transporter ABCG.28) (AtABCG28) (Putative white-brown complex homolog protein 29) (AtWBC29) 120579,122877,123342 Putative white-brown complex homolog protein 30 (Putative non-intrinsic ABC protein 12) (WBC-related protein 1),ABC transporter G family member 24 (ABC transporter ABCG.24) (AtABCG24) (Probable white-brown complex homolog protein 25) (AtWBC25),ABC transporter G family member 28 (ABC transporter ABCG.28) (AtABCG28) (Putative white-brown complex homolog protein 29) (AtWBC29) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2057921;,locus:2009680;,locus:2175826; AT2G37010,AT1G53390,AT5G60740 ABC transporter G family member ABC transporter family protein, putative, expressed (ABC transporter-like protein) (Os11g0416900 protein) (cDNA clone:J023025A20, full insert sequence),ABC transporter-like (Os06g0731200 protein) Q53KA2,Q5Z410 Q53KA2_ORYSJ,Q5Z410_ORYSJ Os11g0416900 LOC_Os11g22350 Os11g0416900 OsJ_26786 OSNPB_110416900,Os06g0731200 B1206D04.17 OSNPB_060731200 ENOG411DQMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os02g0823300 protein (Ubiquitin-protein ligase-like),Os02g0823300 protein (Fragment) Q6K9X4,A0A0P0VRM9 Q6K9X4_ORYSJ,A0A0P0VRM9_ORYSJ Os02g0823300 OJ1136_C04.8 OSNPB_020823300,Os02g0823300 OSNPB_020823300 ENOG411DQMZ ABCF3 Q8H0V6 AB3F_ARATH ABC transporter F family member 3 (ABC transporter ABCF.3) (AtABCF3) (GCN20-type ATP-binding cassette protein GCN3) 79644 ABC transporter F family member 3 (ABC transporter ABCF.3) (AtABCF3) (GCN20-type ATP-binding cassette protein GCN3) cytosol [GO:0005829]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215]; defense response to bacterium [GO:0042742]; response to cadmium ion [GO:0046686] locus:2019409; AT1G64550 ABC transporter F family member Os02g0826500 protein (Putative ABC transporter),Os02g0826500 protein (Fragment) Q6K7R4,A0A0P0VRN4,A0A0P0VRI3 Q6K7R4_ORYSJ,A0A0P0VRN4_ORYSJ,A0A0P0VRI3_ORYSJ P0452F04.18-1 Os02g0826500 OSNPB_020826500,Os02g0826500 OSNPB_020826500 ENOG411DQMX A0A1P8B079,A0A1P8B082,F4JAE0,F4IQ10,F4IQ11 A0A1P8B079_ARATH,A0A1P8B082_ARATH,F4JAE0_ARATH,F4IQ10_ARATH,F4IQ11_ARATH Transducin/WD40 repeat-like superfamily protein R-ATH-5689880; 49015,43408,59879,61412,57948 Transducin/WD40 repeat-like superfamily protein protein deubiquitination [GO:0016579] locus:2083996;,locus:2061778; AT3G53390,AT2G37160 WD repeat-containing protein 20-like Os12g0172500 protein (Transducin family protein, putative, expressed),Os11g0176000 protein (Fragment) Q2QX21,A0A0P0XZH9 Q2QX21_ORYSJ,A0A0P0XZH9_ORYSJ Os12g0172500 LOC_Os12g07450 Os12g0172500 OsJ_35382 OSNPB_120172500,Os11g0176000 OSNPB_110176000 ENOG411DQMY O49711,Q6NQ81,A0A1P8B7X8,A0A1P8B7C5,A0A1P8B7Y0 PP335_ARATH,PP304_ARATH,A0A1P8B7X8_ARATH,A0A1P8B7C5_ARATH,A0A1P8B7Y0_ARATH Pentatricopeptide repeat-containing protein At4g21880, mitochondrial,Pentatricopeptide repeat-containing protein At4g04790, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein,Pentatricopeptide repeat (PPR) superfamily protein 94761,92836,77559,90226,92447 Pentatricopeptide repeat-containing protein At4g21880, mitochondrial,Pentatricopeptide repeat-containing protein At4g04790, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2141642;,locus:2138882; AT4G21880,AT4G04790 Pentatricopeptide repeat-containing protein Os02g0132600 protein (Fragment) A0A0P0VEA9 A0A0P0VEA9_ORYSJ Os02g0132600 OSNPB_020132600 ENOG411DQMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF869) Os02g0614600 protein (Transport protein-like),Os02g0614600 protein Q6K5X7,A0A0P0VLP1 Q6K5X7_ORYSJ,A0A0P0VLP1_ORYSJ Os02g0614600 OJ2055_H10.29 OSNPB_020614600 P0407A09.8,Os02g0614600 OSNPB_020614600 ENOG411DQMG CRK3 Q9CAL2,A0A1P8AP91,A0A1P8APB5 CRK3_ARATH,A0A1P8AP91_ARATH,A0A1P8APB5_ARATH Cysteine-rich receptor-like protein kinase 3 (Cysteine-rich RLK3) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 3 2.7.11.- 71611,54138,59600 Cysteine-rich receptor-like protein kinase 3 (Cysteine-rich RLK3) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2026785; AT1G70530 Cysteine-rich receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DQMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os03g0216400 protein (Pentatricopeptide, putative, expressed) (cDNA clone:002-105-E05, full insert sequence) Q10PZ0 Q10PZ0_ORYSJ Os03g0216400 LOC_Os03g11700 Os03g0216400 OSNPB_030216400 ENOG411DQME PREP2,PREP1 Q8VY06,Q9LJL3,A0A1P8AMX1,A0A1P8AMU8,F4JA10 PREP2_ARATH,PREP1_ARATH,A0A1P8AMX1_ARATH,A0A1P8AMU8_ARATH,F4JA10_ARATH Presequence protease 2, chloroplastic/mitochondrial (AtPreP2) (PreP 2) (EC 3.4.24.-) (Zinc metalloprotease 2) (AtZnMP2),Presequence protease 1, chloroplastic/mitochondrial (AtPreP1) (PreP 1) (EC 3.4.24.-) (Zinc metalloprotease 1) (AtZnMP1),Presequence protease 2,Presequence protease 1 Slightly chlorotic leaves-E. Glaser-2009 FUNCTION: ATP-independent protease that degrades both mitochondrial and chloroplastic transit peptides after their cleavage. Also degrades other unstructured peptides. Specific for peptides in the range of 10 to 65 residues. Shows a preference for cleavage after small polar residues and before basic residues, but without any positional preference. {ECO:0000269|PubMed:12138166}.,FUNCTION: ATP-independent protease that degrades both mitochondrial and chloroplastic transit peptides after their cleavage. Also degrades other unstructured peptides. Specific for peptides in the range of 10 to 65 residues. Shows a preference for cleavage after small polar residues and before basic residues, with a bias for positively charged amino acid residues. {ECO:0000269|PubMed:12138166}. MISCELLANEOUS: The 2 enzymes halves enclose a large proteolytic chamber spacious enough to hold peptide substrates, but sufficiently small to exclude larger, folded proteins. Since the active site includes residues from both the N- and C-terminal part of the protein, proteolysis can occur only when the chamber is closed. Covalently locking the 2 halves of the protease with disulfide bonds induces a loss of activity. ARA:GQT-933-MONOMER;,ARA:GQT-1641-MONOMER; 3.4.24.- 121131,121015,105007,93113,119759 Presequence protease 2, chloroplastic/mitochondrial (AtPreP2) (PreP 2) (EC 3.4.24.-) (Zinc metalloprotease 2) (AtZnMP2),Presequence protease 1, chloroplastic/mitochondrial (AtPreP1) (PreP 1) (EC 3.4.24.-) (Zinc metalloprotease 1) (AtZnMP1),Presequence protease 2,Presequence protease 1 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; protein processing [GO:0016485],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; protein processing [GO:0016485]; response to cadmium ion [GO:0046686],metal ion binding [GO:0046872]; peptidase activity [GO:0008233] TISSUE SPECIFICITY: Expressed in leaves, flowers and roots, but not detected in siliques and shoots. {ECO:0000269|PubMed:15827031}.,TISSUE SPECIFICITY: Expressed only in siliques and flowers. {ECO:0000269|PubMed:15827031}. locus:2012176;,locus:2094138; AT1G49630,AT3G19170 presequence protease Os02g0761400 protein (Fragment) A0A0P0VPR8 A0A0P0VPR8_ORYSJ Os02g0761400 OSNPB_020761400 ENOG411DQMB PES Q9LYK7 PESC_ARATH Pescadillo homolog (AtPES) FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression (PubMed:23909681). Required for normal root cell growth and differentiation (PubMed:25443833). {ECO:0000255|HAMAP-Rule:MF_03028, ECO:0000269|PubMed:23909681, ECO:0000269|PubMed:25443833}. MISCELLANEOUS: Plants silencing PES display severely compromised root meristem structures and a reduction of the primary root length of up to two-thirds. {ECO:0000269|PubMed:25443833}. R-ATH-6791226; 67944 Pescadillo homolog (AtPES) nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; PeBoW complex [GO:0070545]; RNA binding [GO:0003723]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; regulation of ribosome biogenesis [GO:0090069]; regulation of rRNA processing [GO:2000232] TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, epidermal cells and vasculature of developing leaves, trichome progenitor cells, young flowers, developing pollen grains and ovules, and mature pollen grains. {ECO:0000269|Ref.3}. locus:2222607; AT5G14520 pescadillo Pescadillo homolog Q851S7 PESC_ORYSJ PES Os03g0699200 LOC_Os03g49210 OsJ_12225 OSJNBb0017F17.15 FUNCTION: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. {ECO:0000255|HAMAP-Rule:MF_03028}. ENOG411DQMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os09g0327800 protein,Os09g0328066 protein A0A0P0XLE4,A0A0P0XLH8 A0A0P0XLE4_ORYSJ,A0A0P0XLH8_ORYSJ Os09g0327800 OSNPB_090327800,Os09g0328066 OSNPB_090328066 ENOG411DQMA MAGO O23676 MGN_ARATH Protein mago nashi homolog (AtMAGO) DISRUPTION PHENOTYPE: Male sterility due to pollen abortion after meiosis. {ECO:0000269|PubMed:26867216}. Male gametophyte defective; Rare embryo defective (inferred)-D. Preuss-2004 FUNCTION: Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). The MAGO-Y14 heterodimer inhibits the ATPase activity of EIF4A3, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The MAGO-Y14 heterodimer interacts with the EJC key regulator PYM leading to EJC disassembly in the cytoplasm (By similarity). Can increase in vitro the expression from reporter constructs that contain leader introns required for the expression of different genes. In association with MAGO and PYM, participates in intron-mediated enhancement of gene expression (PubMed:21676911). The MAGO-Y14 heterodimer works synergistically with the NMD pathway to regulate male gametophyte development (PubMed:26867216). {ECO:0000250|UniProtKB:P61326, ECO:0000269|PubMed:21676911, ECO:0000269|PubMed:26867216}. R-ATH-72163;R-ATH-975957; 17458 Protein mago nashi homolog (AtMAGO) chloroplast [GO:0009507]; exon-exon junction complex [GO:0035145]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; P-body [GO:0000932]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; pollen tube guidance [GO:0010183]; positive regulation of gene expression [GO:0010628]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed in root and shoot meristems, cotyledons, vascular tissues of leaves, receptacle of flowers and siliques, and pollen grains. {ECO:0000269|PubMed:21676911}. locus:2205630; AT1G02140 protein mago nashi Protein mago nashi homolog 2 (OsMAGO2) (Mago nashi-like protein 2),Protein mago nashi homolog 1 (OsMAGO1) (Mago nashi-like protein 1) P49030,A0A0P0XB70 MGN2_ORYSJ,MGN1_ORYSJ MAGO2 Os12g0287200 LOC_Os12g18880 OsJ_35789,MAGO1 Os08g0107900 P0450B04.29 FUNCTION: Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). The MAGO-Y14 heterodimer inhibits the ATPase activity of EIF4A3, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The MAGO-Y14 heterodimer interacts with the EJC key regulator PYM leading to EJC disassembly in the cytoplasm (By similarity). EJC core heterodimers play essential roles in plant growth and development, and pollen and seed development (PubMed:25230811, PubMed:24820023). The MAGO-Y14 heterodimer selectively binds to the UDT1 (UNDEVELOPED TAPETUM 1) pre-mRNA transcript and regulates the splicing of UDT1, a key regulator in stamen development (PubMed:24820023). {ECO:0000250|UniProtKB:P61326, ECO:0000269|PubMed:24820023, ECO:0000269|PubMed:25230811}. ENOG411DQMN URGT6,URGT4,URGT5,UDP-Rha,NST-K1 Q9FDZ5,Q8RWW7,Q9SZ96,A0A1P8B624,A0A1P8B632,F4JW16 URGT6_ARATH,URGT4_ARATH,URGT5_ARATH,A0A1P8B624_ARATH,A0A1P8B632_ARATH,F4JW16_ARATH UDP-rhamnose/UDP-galactose transporter 6 (UDP-Rha/UDP-Gal transporter 6) (Bi-functional UDP-rhamnose/UDP-galactose transporter),UDP-rhamnose/UDP-galactose transporter 4 (UDP-Rha/UDP-Gal transporter 4) (Bi-functional UDP-rhamnose/UDP-galactose transporter) (Nucleotide sugar transporter-KT 1) (AtNST-KT1),UDP-rhamnose/UDP-galactose transporter 5 (UDP-Rha/UDP-Gal transporter 5) (Bi-functional UDP-rhamnose/UDP-galactose transporter),Nucleotide-sugar transporter family protein,Nucleotide sugar transporter-KT 1 FUNCTION: Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode. {ECO:0000269|PubMed:25053812}.,FUNCTION: Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode. {ECO:0000269|PubMed:16831428, ECO:0000269|PubMed:25053812}. 36943,37125,37030,26163,30981,36590 UDP-rhamnose/UDP-galactose transporter 6 (UDP-Rha/UDP-Gal transporter 6) (Bi-functional UDP-rhamnose/UDP-galactose transporter),UDP-rhamnose/UDP-galactose transporter 4 (UDP-Rha/UDP-Gal transporter 4) (Bi-functional UDP-rhamnose/UDP-galactose transporter) (Nucleotide sugar transporter-KT 1) (AtNST-KT1),UDP-rhamnose/UDP-galactose transporter 5 (UDP-Rha/UDP-Gal transporter 5) (Bi-functional UDP-rhamnose/UDP-galactose transporter),Nucleotide-sugar transporter family protein,Nucleotide sugar transporter-KT 1 Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; antiporter activity [GO:0015297]; nucleotide-sugar transmembrane transporter activity [GO:0005338]; transmembrane transporter activity [GO:0022857]; carbohydrate transport [GO:0008643]; purine nucleotide-sugar transmembrane transport [GO:0090480],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; nucleotide-sugar transmembrane transporter activity [GO:0005338]; transmembrane transporter activity [GO:0022857]; UDP-galactose transmembrane transporter activity [GO:0005459]; nucleotide-sugar transport [GO:0015780]; purine nucleotide-sugar transmembrane transport [GO:0090480]; UDP-galactose transmembrane transport [GO:0072334],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; nucleotide-sugar transmembrane transporter activity [GO:0005338]; transmembrane transporter activity [GO:0022857]; carbohydrate transport [GO:0008643]; purine nucleotide-sugar transmembrane transport [GO:0090480],integral component of membrane [GO:0016021]; nucleotide-sugar transmembrane transporter activity [GO:0005338]; carbohydrate transport [GO:0008643]; nucleotide-sugar transport [GO:0015780],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16831428}. locus:2009076;,locus:2122467;,locus:2118514; AT1G34020,AT4G39390,AT4G09810 UDP-galactose transporter 2-like Os05g0215800 protein (Putative transmembrane protein) (cDNA clone:J013000H04, full insert sequence),Os02g0614500 protein (Transmembrane protein-like) (cDNA clone:J023130L12, full insert sequence),Os02g0614500 protein Q6I5W9,Q6K5X9,A0A0P0VLR7 Q6I5W9_ORYSJ,Q6K5X9_ORYSJ,A0A0P0VLR7_ORYSJ Os05g0215800 Os05g0215800 OJ1076_H08.6 OSNPB_050215800,OJ2055_H10.27-1 P0407A09.6-1 Os02g0614500 OsJ_07519 OSNPB_020614500,Os02g0614500 OSNPB_020614500 ENOG411DQMM CLS Q93YW7 CLS_ARATH Cardiolipin synthase (CMP-forming), mitochondrial (CLS) (EC 2.7.8.41) (Phosphatidylglycerophosphate synthase 3) (PGP synthase 3) DISRUPTION PHENOTYPE: Strong dwarf phenotype, small siliques with only a few small-sized and sterile seeds, when grown in long day conditions under low light. Dysfunction of mitochondria: abnormal ultrastructure, reduced content of respiratory complex I/complex III supercomplexes and marked accumulation of tricarboxylic acid cycle derivatives and amino acids. {ECO:0000269|PubMed:24151294, ECO:0000269|PubMed:24443516}. FUNCTION: Catalyzes the synthesis of cardiolipin (CL) (diphosphatidylglycerol) by specifically transferring a phosphatidyl group from CDP-diacylglycerol to phosphatidylglycerol (PG). Cannot catalyze the phosphatidyl group transfer from one PG molecule to another to form CL. Possesses high activity with PG species carrying dioleoyl groups and low activity with species carrying one or two palmitoyl groups. CL is a key phospholipid in mitochondrial membranes and plays important roles in maintaining the functional integrity and dynamics of mitochondria under both optimal and stress conditions. In mitochondrial fission, CL stabilizes the protein complex of the major mitochondrial fission factors, DRP3A and DRP3B. {ECO:0000269|PubMed:15527784, ECO:0000269|PubMed:15811335, ECO:0000269|PubMed:24151294, ECO:0000269|PubMed:24443516}. ARA:AT4G04870-MONOMER;MetaCyc:AT4G04870-MONOMER; R-ATH-1482925;R-ATH-1483076; 2.7.8.B12; 2.7.8.41 38042 Cardiolipin synthase (CMP-forming), mitochondrial (CLS) (EC 2.7.8.41) (Phosphatidylglycerophosphate synthase 3) (PGP synthase 3) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; cardiolipin synthase activity [GO:0008808]; manganese ion binding [GO:0030145]; cardiolipin biosynthetic process [GO:0032049] locus:2138962; AT4G04870 cardiolipin synthase CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase 1) (PGP synthase 1) Q5N9A1 PGPS1_ORYSJ Os01g0789100 P0557A01.8 FUNCTION: Catalyzes the committed step to the synthesis of the acidic phospholipids. Transfers specifically a phosphatidyl group from CDP-diacylglycerol to glycerol-3-phosphate to form phosphatidylglycerophosphate (By similarity). {ECO:0000250}. ENOG411DQMK ELP2 F4I1S7,F4I1S8 ELP2_ARATH,F4I1S8_ARATH Elongator complex protein 2 (AtELP2) (Elongator component 2) (Protein GREEN NPR1 SEEDLING ON SA MEDIUM 1),Elongator protein 2 DISRUPTION PHENOTYPE: Narrow leaves and reduced root growth that results from a decreased cell division rate. Increased abscisic acid (ABA) sensitivity and drought tolerance. Higher resistance to oxidative stress mediated by methyl viologen (MV) that blocks electron transport during photosynthesis and by CsCl in light. Accumulates anthocyanins. Reduced defense gene induction kinetics and salicylic acid (SA) accumulation mediated by pathogens (e.g. Pseudomonas syringae pv. maculicola) accompanied by an enhanced susceptibility in npr1 deficient plants. {ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20807211}. Root growth sensitive to ABA-Z. Gong-2009 FUNCTION: Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (By similarity). Promotes organs development by modulating cell division rate. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. Accelerator of defense gene induction required for rapid defense gene induction, and for the establishment of both basal and effector-triggered immunity (ETI), in a NPR1-independent manner, but is not required for systemic acquired resistance (SAR) establishment. {ECO:0000250, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20807211}. 92681,92937 Elongator complex protein 2 (AtELP2) (Elongator component 2) (Protein GREEN NPR1 SEEDLING ON SA MEDIUM 1),Elongator protein 2 cytoplasm [GO:0005737]; Elongator holoenzyme complex [GO:0033588]; nucleus [GO:0005634]; transferase activity, transferring acyl groups [GO:0016746]; abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; negative regulation of anthocyanin metabolic process [GO:0031538]; positive regulation of cell proliferation [GO:0008284]; positive regulation of defense response [GO:0031349]; regulation of leaf development [GO:2000024]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979]; transcription, DNA-templated [GO:0006351],histone acetylation [GO:0016573]; regulation of DNA demethylation [GO:1901535]; regulation of DNA methylation [GO:0044030] TISSUE SPECIFICITY: Expressed in leaves, stems, roots, flowers, siliques and guard cells. {ECO:0000269|PubMed:19500300}. locus:2010272; AT1G49540 elongator complex protein Os08g0493900 protein (Putative signal transducer and activator of transcription interacting protein) Q6Z8S7 Q6Z8S7_ORYSJ Os08g0493900 OsJ_27778 OSNPB_080493900 P0686H11.31 ENOG411DQMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DQMI FBA2,FBA1 Q944G9,Q9SJU4,F4IGL7,F4JUJ5,F4IGL5 ALFP2_ARATH,ALFP1_ARATH,F4IGL7_ARATH,F4JUJ5_ARATH,F4IGL5_ARATH Fructose-bisphosphate aldolase 2, chloroplastic (AtFBA2) (EC 4.1.2.13),Fructose-bisphosphate aldolase 1, chloroplastic (AtFBA1) (EC 4.1.2.13),Fructose-bisphosphate aldolase (EC 4.1.2.13) DISRUPTION PHENOTYPE: Reduced growth rate. Unability to accumulate starch in leaves during daylight. {ECO:0000269|PubMed:22561114}. FUNCTION: Plays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4. {ECO:0000305}.,PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4. {ECO:0000256|SAAS:SAAS00336717}. ARA:AT4G38970-MONOMER;,ARA:AT2G21330-MONOMER; 4.1.2.13 42988,42931,33323,41344,41808 Fructose-bisphosphate aldolase 2, chloroplastic (AtFBA2) (EC 4.1.2.13),Fructose-bisphosphate aldolase 1, chloroplastic (AtFBA1) (EC 4.1.2.13),Fructose-bisphosphate aldolase (EC 4.1.2.13) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; cytosolic ribosome [GO:0022626]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686],fructose-bisphosphate aldolase activity [GO:0004332]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Highly expressed in rosettes leaves. {ECO:0000269|PubMed:22561114}.,TISSUE SPECIFICITY: Highly expressed in rosettes leaves and cauline leaves. {ECO:0000269|PubMed:22561114}. locus:2120192;,locus:2050049; AT4G38970,AT2G21330 fructose-bisphosphate aldolase NA NA NA NA NA NA NA ENOG411DQM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os01g0228500 protein (cDNA clone:002-125-E07, full insert sequence) Q5N7Z3 Q5N7Z3_ORYSJ Os01g0228500 OSNPB_010228500 P0452F10.22 ENOG411DQM7 PGM1 O04499,Q9M9K1 PMG1_ARATH,PMG2_ARATH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 (BPG-independent PGAM 1) (Phosphoglyceromutase 1) (EC 5.4.2.12) (PGAM-I 1),Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 (BPG-independent PGAM 2) (Phosphoglyceromutase 2) (EC 5.4.2.12) (PGAM-I 2) Vegetative and reproductive growth are greatly reduced with respect to wild type. Pale reticulate leaf phenotype. Double mutants are self-sterile due to failure to produce pollen grains. FUNCTION: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. {ECO:0000250}. PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5. ARA:AT1G09780-MONOMER;,ARA:AT3G08590-MONOMER; 5.4.2.12; 5.4.2.12 60580,60764 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 (BPG-independent PGAM 1) (Phosphoglyceromutase 1) (EC 5.4.2.12) (PGAM-I 1),Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 (BPG-independent PGAM 2) (Phosphoglyceromutase 2) (EC 5.4.2.12) (PGAM-I 2) apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrial envelope [GO:0005740]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [GO:0046537]; manganese ion binding [GO:0030145]; glucose catabolic process [GO:0006007]; glycolytic process [GO:0006096]; pollen development [GO:0009555]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; stomatal movement [GO:0010118],apoplast [GO:0048046]; cytosol [GO:0005829]; plasmodesma [GO:0009506]; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [GO:0046537]; manganese ion binding [GO:0030145]; glucose catabolic process [GO:0006007]; glycolytic process [GO:0006096]; pollen development [GO:0009555]; response to cadmium ion [GO:0046686]; stomatal movement [GO:0010118] locus:2024357;,locus:2077793; AT1G09780,AT3G08590 Phosphoglycerate mutase Os01g0817700 protein (Phospoglycerate mutase) (Putative phosphoglycerate mutase) (cDNA clone:J013001J10, full insert sequence),'putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Os05g0482700 protein),2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative (Os03g0330200 protein) Q5QMK7,Q5KQH5,Q10LY9 Q5QMK7_ORYSJ,Q5KQH5_ORYSJ,Q10LY9_ORYSJ Os01g0817700 B1148D12.28 OSNPB_010817700 P0454H12.17,Os05g0482700 Os05g0482700 OsJ_18964 OSJNBa0095J22.15 OSNPB_050482700,Os03g0330200 LOC_Os03g21260 OsJ_10707 OSNPB_030330200 ENOG411DQM4 Q9LUT6,F4J551 Q9LUT6_ARATH,F4J551_ARATH Wall-associated receptor kinase carboxy-terminal protein 31217,33582 Wall-associated receptor kinase carboxy-terminal protein kinase activity [GO:0016301]; polysaccharide binding [GO:0030247] locus:2089015; AT3G17350 NA NA NA NA NA NA NA NA ENOG411DQM5 PCMP-H73 Q9M9E2 PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic (Protein EARLY CHLOROPLAST BIOGENESIS 2) (AtECB2) (Protein VANILLA CREAM 1) DISRUPTION PHENOTYPE: Albino cotyledons without primary leaf and seedling lethality under autotrophic growth conditions. {ECO:0000269|PubMed:19500301}. early chloroplast biogenesis mutant; lacks an organized thylakoid membrane; albino cotyledons; seedling lethal. Seedling lethal; Albino; Abnormal chloroplast morphology-Z. Yang-2009 FUNCTION: Regulates the RNA editing of the chloroplast transcript accD, and is essential for the early stages of chloroplast biogenesis (PubMed:20143129, PubMed:19500301, PubMed:21294841). Required for the RNA editing of the chloroplast transcript ndhF (PubMed:20143129, PubMed:21294841). {ECO:0000269|PubMed:19500301, ECO:0000269|PubMed:20143129, ECO:0000269|PubMed:21294841}. 97697 Pentatricopeptide repeat-containing protein At1g15510, chloroplastic (Protein EARLY CHLOROPLAST BIOGENESIS 2) (AtECB2) (Protein VANILLA CREAM 1) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast organization [GO:0009658]; growth [GO:0040007]; response to light stimulus [GO:0009416]; RNA modification [GO:0009451] locus:2196583; AT1G15510 Pentatricopeptide repeat-containing protein Os05g0574800 protein Q6F363 Q6F363_ORYSJ Os05g0574800 OJ1268_B08.11 OsJ_19638 OSNPB_050574800 ENOG411DQM2 MTSF1 Q9M9X9,A0A1P8AQ62 PPR18_ARATH,A0A1P8AQ62_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein 111533,112766 Pentatricopeptide repeat-containing protein At1g06710, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT1G06710 Pentatricopeptide repeat-containing protein At1g06710 Os04g0488500 protein Q0JC71 Q0JC71_ORYSJ Os04g0488500 Os04g0488500 OSNPB_040488500 ENOG411DQM3 A0A1P8APA8,Q1PEV9,Q8L643,F4I6D6 A0A1P8APA8_ARATH,Q1PEV9_ARATH,Q8L643_ARATH,F4I6D6_ARATH RNA polymerase I specific transcription initiation factor RRN3 protein,RNA polymerase I specific transcription initiation factor RRN3 family protein (RNA polymerase I specific transcription initiation factor RRN3 protein),RNA polymerase I specific transcription initiation factor RRN3 protein (Uncharacterized protein At2g34750) 68453,64303,69046,68065 RNA polymerase I specific transcription initiation factor RRN3 protein,RNA polymerase I specific transcription initiation factor RRN3 family protein (RNA polymerase I specific transcription initiation factor RRN3 protein),RNA polymerase I specific transcription initiation factor RRN3 protein (Uncharacterized protein At2g34750) translation initiation factor activity [GO:0003743],nucleus [GO:0005634]; RNA polymerase I core binding [GO:0001042]; transcription factor activity, core RNA polymerase I binding [GO:0001181]; translation initiation factor activity [GO:0003743]; transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript [GO:0001180] locus:2056063;,locus:2061574;,locus:2204609; AT2G39240,AT2G34750,AT1G30590 RNA polymerase I specific transcription initiation factor Os06g0688100 protein (Putative RNA polymerase I transcription factor RRN3) (cDNA clone:J033026O11, full insert sequence),Os06g0688100 protein (Fragment) Q653F3,A0A0P0X0J3,A0A0P0X099,A0A0P0X072 Q653F3_ORYSJ,A0A0P0X0J3_ORYSJ,A0A0P0X099_ORYSJ,A0A0P0X072_ORYSJ P0623A10.34-1 P0661G04.7-1 Os06g0688100 OsJ_22429 OSNPB_060688100,Os06g0688100 OSNPB_060688100 ENOG411DQM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of Vps4 activity in the MVB pathway Expressed protein (Os03g0257600 protein) Q10NU9 Q10NU9_ORYSJ Os03g0257600 LOC_Os03g15230 OSNPB_030257600 ENOG411DQM1 A0A1P8AY83,A0A1P8AY28,F4IJ68 A0A1P8AY83_ARATH,A0A1P8AY28_ARATH,F4IJ68_ARATH Transducin family protein / WD-40 repeat family protein 248442,274484,275518 Transducin family protein / WD-40 repeat family protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; RAVE complex [GO:0043291]; vacuolar acidification [GO:0007035]; vacuolar proton-transporting V-type ATPase complex assembly [GO:0070072] locus:2040008; AT2G46560 WD domain G-beta repeat Os01g0552000 protein (Fragment),Os01g0551900 protein (Fragment) A0A0P0V3X8,A0A0N7KD53,A0A0P0V3Y8 A0A0P0V3X8_ORYSJ,A0A0N7KD53_ORYSJ,A0A0P0V3Y8_ORYSJ Os01g0552000 OSNPB_010552000,Os01g0551900 OSNPB_010551900 ENOG411DQM8 NCED6 Q9LRM7 NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic (AtNCED6) (EC 1.13.11.51) DISRUPTION PHENOTYPE: Plants exhibit abscisic-acid-deficient phenotypes in seeds, but not in vegetative tissues. {ECO:0000269|PubMed:11532178}. Approximately 40% of mutant seeds germinate after far red/red light treatment whereas wild type germination was suppressed almost entirely.,No visible phenotype was observed during vegetative stage. In seeds ABA content was reduced to half in mutants compared to wild type. Freshly harvested seeds germinated at a rate similar to wild type seed. Seed dormancy was not affected. When germinated on medium supplemented with paclobutrazol germination rate was higher in mutant seeds than in the wild type.,No visible phenotype was observed during vegetative stage. When germinated on medium supplemented with paclobutrazol germination rate was higher in double mutant seeds than in the single mutants or wild type i.e. paclobutrazol resistance was enhanced in double mutant seeds. Dormancy was reduced in double mutants and levels of ABA in the seeds were up to 18% lover than in the wild type or single mutants.,Double mutants were indistinguishable from bps1 single mutants. Low ABA levels in seeds; Germination resistant to paclobutrazol (inhibitor of GA synthesis)-A. Marion-Poll-2006 FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. Contributes probably to abscisic acid synthesis for the induction of seed dormancy. {ECO:0000269|PubMed:11532178, ECO:0000269|PubMed:16412079}. MetaCyc:AT3G24220-MONOMER; 1.13.11.51 63821 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic (AtNCED6) (EC 1.13.11.51) chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; 9-cis-epoxycarotenoid dioxygenase activity [GO:0045549]; metal ion binding [GO:0046872]; abscisic acid biosynthetic process [GO:0009688]; response to red light [GO:0010114]; response to red or far red light [GO:0009639] DEVELOPMENTAL STAGE: Expressed in seeds at early and mid-maturation stages. {ECO:0000269|PubMed:16412079}. TISSUE SPECIFICITY: Expressed before fertilization in male and female gametophytes, and then immediately after pollination, restricted to seed endosperm. {ECO:0000269|PubMed:12834401, ECO:0000269|PubMed:16412079}. locus:2093751; AT3G24220 9-cis-epoxycarotenoid dioxygenase OSJNBb0080H08.19 protein (Os04g0131800 protein) Q7XRP0 Q7XRP0_ORYSJ Os04g0131800 OsJ_13633 OSJNBb0080H08.19 OSNPB_040131800 ENOG411DQM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os11g0109400 protein (Sodium/hydrogen exchanger family protein, expressed) (cDNA clone:J023077P16, full insert sequence),Os08g0465300 protein (Fragment),Os09g0474501 protein (Fragment),Os12g0109150 protein,Os12g0109100 protein,Os09g0495100 protein (Fragment),Os01g0794650 protein (Fragment) Q2RBJ3,A0A0P0XGX6,A0A0P0XNU0,A0A0P0Y5Z0,A0A0P0Y603,A0A0P0XNM3,A0A0P0V963 Q2RBJ3_ORYSJ,A0A0P0XGX6_ORYSJ,A0A0P0XNU0_ORYSJ,A0A0P0Y5Z0_ORYSJ,A0A0P0Y603_ORYSJ,A0A0P0XNM3_ORYSJ,A0A0P0V963_ORYSJ Os11g0109400 LOC_Os11g01820 Os11g0109400 OsJ_32670 OSNPB_110109400,Os08g0465300 OSNPB_080465300,Os09g0474501 OSNPB_090474501,Os12g0109150 OSNPB_120109150,Os12g0109100 OSNPB_120109100,Os09g0495100 OSNPB_090495100,Os01g0794650 OSNPB_010794650 ENOG411EMBH Q8L9S0,Q8VXX9,A0A1P8APW7 BETL2_ARATH,BETL1_ARATH,A0A1P8APW7_ARATH Bet1-like protein At1g29060,Bet1-like protein At4g14600,Target SNARE coiled-coil domain protein FUNCTION: Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles (By similarity). {ECO:0000250}. 15102,15384,10823 Bet1-like protein At1g29060,Bet1-like protein At4g14600,Target SNARE coiled-coil domain protein endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; positive regulation of response to salt stress [GO:1901002]; protein transport [GO:0015031]; regulation of response to osmotic stress [GO:0047484]; vacuolar sequestering of sodium ion [GO:0043182]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021] locus:2029954;,locus:2129940; AT1G29060,AT4G14600 Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles (By similarity) NA NA NA NA NA NA NA ENOG411EMBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bet1-like protein Os07g0577900 protein (cDNA clone:001-107-G09, full insert sequence) Q6ZL92 Q6ZL92_ORYSJ Os07g0577900 OJ1065_B06.22 OsJ_24055 OSNPB_070577900 ENOG411EMBC Q8VZB5,A0A1P8BDE0 Q8VZB5_ARATH,A0A1P8BDE0_ARATH Rubisco methyltransferase family protein (Uncharacterized protein At5g14260) (Uncharacterized protein At5g14260; F18O22_50),Rubisco methyltransferase family protein 57585,48142 Rubisco methyltransferase family protein (Uncharacterized protein At5g14260) (Uncharacterized protein At5g14260; F18O22_50),Rubisco methyltransferase family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026],methyltransferase activity [GO:0008168] locus:2145663; AT5G14260 SET domain-containing protein NA NA NA NA NA NA NA ENOG411EMBX GLR1.3,GLR1.2,GLR1.4 Q9FH75,Q9LV72,Q8LGN1,A0A1P8BHI4,A0A1P8BHG9,A0A1P8BHH2 GLR13_ARATH,GLR12_ARATH,GLR14_ARATH,A0A1P8BHI4_ARATH,A0A1P8BHG9_ARATH,A0A1P8BHH2_ARATH Glutamate receptor 1.3 (Ligand-gated ion channel 1.3),Glutamate receptor 1.2 (Ligand-gated ion channel 1.2),Glutamate receptor 1.4 (Ligand-gated ion channel 1.4),Glutamate receptor FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. Can transport calcium ions. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. {ECO:0000269|PubMed:18625242}.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 97024,98152,97760,93893,93366,84908 Glutamate receptor 1.3 (Ligand-gated ion channel 1.3),Glutamate receptor 1.2 (Ligand-gated ion channel 1.2),Glutamate receptor 1.4 (Ligand-gated ion channel 1.4),Glutamate receptor integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; cation channel activity [GO:0005261]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular cation homeostasis [GO:0030003]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots. {ECO:0000269|PubMed:12082126}.,TISSUE SPECIFICITY: Expressed predominantly in roots and siliques. {ECO:0000269|PubMed:12082126}. locus:2166006;,locus:2166001;,locus:2079681; AT5G48410,AT5G48400,AT3G07520 Glutamate-gated receptor that probably acts as non- selective cation channel NA NA NA NA NA NA NA ENOG411EMBY GLR3.1,GLR3.2,GLUR2 Q7XJL2,Q93YT1,A0A1P8B880 GLR31_ARATH,GLR32_ARATH,A0A1P8B880_ARATH Glutamate receptor 3.1 (AtGLR2) (Ligand-gated ion channel 3.1),Glutamate receptor 3.2 (AtGluR2) (Ligand-gated ion channel 3.2),Glutamate receptor FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Required for the long-term calcium oscillation-regulated stomatal movements. {ECO:0000269|PubMed:19143998}.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Could play a role in calcium unloading from xylem.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. MISCELLANEOUS: Overexpression of the gene leads to calcium deficiency and hypersensitivity to potassium and sodium. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 102613,101663,85949 Glutamate receptor 3.1 (AtGLR2) (Ligand-gated ion channel 3.1),Glutamate receptor 3.2 (AtGluR2) (Ligand-gated ion channel 3.2),Glutamate receptor integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots. Firt detected in the vascular tissues of the cotyledons, and later in the vasculature of all organs. In leaves, preferentially expressed in guard cells. {ECO:0000269|PubMed:12082126, ECO:0000269|PubMed:19143998}.,TISSUE SPECIFICITY: Expressed predominantly in leaves and siliques, and at lower level in flowers, stems and roots. Detected in the vascular tissues of both shoots and roots. {ECO:0000269|PubMed:12082126}. locus:2122128; AT2G17260,AT4G35290 Glutamate-gated receptor that probably acts as non- selective cation channel NA NA NA NA NA NA NA ENOG411EMBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor family ligand binding region NA NA NA NA NA NA NA ENOG411EMBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EMBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Glutamate receptor,Os09g0428600 protein Q69L07,B9G3Q7,Q69L11,A0A0P0XNT9,A0A0P0XLY5 Q69L07_ORYSJ,B9G3Q7_ORYSJ,Q69L11_ORYSJ,A0A0P0XNT9_ORYSJ,A0A0P0XLY5_ORYSJ Os09g0429400 OsJ_29450 OSNPB_090429400 P0689B09.22,Os09g0429500 OsJ_29451 OSNPB_090429500,Os09g0429000 OsJ_29446 OSNPB_090429000 P0689B09.15,Os09g0428600 OSNPB_090428600,Os09g0429200 OSNPB_090429200 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. ENOG411E7W4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0802200 protein (cDNA clone:001-106-A12, full insert sequence) Q8S2F9 Q8S2F9_ORYSJ Os01g0802200 Os01g0802200 OSNPB_010802200 P0003D09.30 ENOG411EMBV GLR1.1 Q9M8W7,A0A1I9LLK2,A0A1I9LLK1 GLR11_ARATH,A0A1I9LLK2_ARATH,A0A1I9LLK1_ARATH Glutamate receptor 1.1 (AtGLR1) (Ligand-gated ion channel 1.1),Glutamate receptor 1.1,Glutamate receptor DISRUPTION PHENOTYPE: Increased sensitivity to exogenous abscisic acid (ABA) and higher ABA levels in leaves. {ECO:0000269|PubMed:15564521}. FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. Can transport sodium, potassium, and calcium ions. Functions as a carbon and nitrogen regulator and/or sensor that regulates carbon and nitrogen metabolism and distinct physiological process such as germination through the control of acid abscisic (ABA) biosynthesis. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Seems required for the regulation of the abscisic acid (ABA) signaling pathway that modulates many aspects of plant physiology such as seed germination and response to drought (e.g. stomata opening). {ECO:0000269|PubMed:12738881, ECO:0000269|PubMed:15564521, ECO:0000269|PubMed:18625242}.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 90509,84315,87468 Glutamate receptor 1.1 (AtGLR1) (Ligand-gated ion channel 1.1),Glutamate receptor 1.1,Glutamate receptor integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; cation channel activity [GO:0005261]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; potassium channel activity [GO:0005267]; sodium channel activity [GO:0005272]; abscisic acid-activated signaling pathway [GO:0009738]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular cation homeostasis [GO:0030003]; cellular response to amino acid stimulus [GO:0071230]; potassium ion transport [GO:0006813]; response to abscisic acid [GO:0009737]; sodium ion transport [GO:0006814],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots. First detected in the root-shoot junction, and later in lateral roots and at the margin of matures leaves. {ECO:0000269|PubMed:12082126}. locus:2102975; AT3G04110 Glutamate-gated receptor that probably acts as non- selective cation channel NA NA NA NA NA NA NA ENOG411EMBW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Glutamate receptor,Os06g0188400 protein (Fragment),Os02g0787600 protein (Fragment) Q6K4P7,A0A0P0WTD2,A0A0P0VQE8 Q6K4P7_ORYSJ,A0A0P0WTD2_ORYSJ,A0A0P0VQE8_ORYSJ Os02g0787600 Os02g0787600 OSJNBa0054K20.15-1 OSNPB_020787600,Os06g0188400 OSNPB_060188400,Os02g0787600 OSNPB_020787600 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. ENOG411ECPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411ECPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ASF1 like histone chaperone NA NA NA NA NA NA NA ENOG411ECPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os12g0272800 protein A0A0P0Y8W7 A0A0P0Y8W7_ORYSJ Os12g0272800 OSNPB_120272800 ENOG411ECPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECPE A0A1P8AY78 A0A1P8AY78_ARATH Transcriptional factor B3 family protein 12801 Transcriptional factor B3 family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] B3 NA NA NA NA NA NA NA ENOG411EK04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Os11g0157600 protein (Fragment) A0A0P0XZB5 A0A0P0XZB5_ORYSJ Os11g0157600 OSNPB_110157600 ENOG411EK06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sigma-54 interaction domain NA NA NA NA NA NA NA ENOG411EK01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EK02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif NA NA NA NA NA NA NA ENOG411EESW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EESU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein NA NA NA NA NA NA NA ENOG411EESZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EESX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EESG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EESF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hyaluronan / mRNA binding family NA NA NA NA NA NA NA ENOG411EESE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0495400 protein (Fragment) A0A0P0VJ90 A0A0P0VJ90_ORYSJ Os02g0495400 OSNPB_020495400 ENOG411EESK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-III NA NA NA NA NA NA NA ENOG411EK0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase RCH1-like NA NA NA NA NA NA NA ENOG411EESH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMB8 EXA1 Q9FMM3 Q9FMM3_ARATH GYF domain-containing protein (Gb|AAC80623.1) 187619 GYF domain-containing protein (Gb|AAC80623.1) mRNA binding [GO:0003729]; defense response to virus [GO:0051607]; response to abscisic acid [GO:0009737] locus:2160041; AT5G42950 GYF domain NA NA NA NA NA NA NA ENOG411EMB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain NA NA NA NA NA NA NA ENOG411EMB0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formin-like protein NA NA NA NA NA NA NA ENOG411EMB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 NA NA NA NA NA NA NA ENOG411EMB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 NA NA NA NA NA NA NA ENOG411EMB4 FH1 Q9SE97,A0A1I9LNY7 FH1_ARATH,A0A1I9LNY7_ARATH Formin-like protein 1 (AtFH1) (AtFORMIN-8),Formin-like protein (Fragment) FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. Involved in polar pollen cell growth process by maintaining tip-focused cell membrane expansion for the polar extension of pollen tubes. {ECO:0000269|PubMed:14671023, ECO:0000269|PubMed:15994911}. 115148,17724 Formin-like protein 1 (AtFH1) (AtFORMIN-8),Formin-like protein (Fragment) cell wall [GO:0005618]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; actin binding [GO:0003779]; actin filament binding [GO:0051015]; actin cytoskeleton organization [GO:0030036]; actin nucleation [GO:0045010]; barbed-end actin filament capping [GO:0051016] locus:2094493; AT3G25500 FH2 NA NA NA NA NA NA NA ENOG411E2HM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os09g0356800 protein (Putative OsD305),Os09g0349700 protein,Os09g0355400 protein (Serine/threonine-specific receptor protein kinase-like) (cDNA clone:J013096C22, full insert sequence),Os09g0358100 protein,Os09g0358700 protein,Os09g0350900 protein (cDNA, clone: J090035M04, full insert sequence),Os09g0349901 protein,Os09g0348600 protein,Os09g0349800 protein (Fragment),Os09g0352000 protein,Os09g0355400 protein,Os09g0349333 protein,Os09g0349600 protein (Fragment),Os09g0359500 protein (Fragment),Os09g0351800 protein,Os09g0358000 protein,Os09g0354600 protein,Os09g0351700 protein,Os09g0356000 protein (Fragment),Os09g0348400 protein,Os09g0349466 protein,Os09g0353200 protein,Os09g0355700 protein,Os09g0350067 protein,Os09g0390600 protein Q5QL24,Q0J2E8,Q6EQK1,A3BXZ8,B9G358,B7F9M5,A0A0P0XL01,A0A0N7KQM4,A0A0P0XLE8,A0A0P0XLU8,A0A0P0XM88,A0A0P0XM02,A0A0P0XLQ2,A0A0N7KQN1,A0A0P0XMK0,A0A0P0XLA2,A0A0P0XKJ4,A0A0P0XMD4,A0A0P0XML9,A0A0P0XKH9,A0A0P0XL66,A0A0P0XLS4,A0A0P0XMF0,A0A0P0XL23,A0A0P0XLW7 Q5QL24_ORYSJ,Q0J2E8_ORYSJ,Q6EQK1_ORYSJ,A3BXZ8_ORYSJ,B9G358_ORYSJ,B7F9M5_ORYSJ,A0A0P0XL01_ORYSJ,A0A0N7KQM4_ORYSJ,A0A0P0XLE8_ORYSJ,A0A0P0XLU8_ORYSJ,A0A0P0XM88_ORYSJ,A0A0P0XM02_ORYSJ,A0A0P0XLQ2_ORYSJ,A0A0N7KQN1_ORYSJ,A0A0P0XMK0_ORYSJ,A0A0P0XLA2_ORYSJ,A0A0P0XKJ4_ORYSJ,A0A0P0XMD4_ORYSJ,A0A0P0XML9_ORYSJ,A0A0P0XKH9_ORYSJ,A0A0P0XL66_ORYSJ,A0A0P0XLS4_ORYSJ,A0A0P0XMF0_ORYSJ,A0A0P0XL23_ORYSJ,A0A0P0XLW7_ORYSJ Os09g0356800 OSNPB_090356800 P0591A03.17,Os09g0349700 OSNPB_090349700,Os09g0355400 Os09g0355400 OsJ_29036 OSJNBa0042H24.55-1 OSJNOa054B01.3-1 OSNPB_090355400,Os09g0358100 OsJ_29050 OSNPB_090358100,Os09g0358700 OsJ_29053 OSNPB_090358700,Os09g0350900 OsJ_29018 OSNPB_090350900,Os09g0349901 OSNPB_090349901,Os09g0348600 OSNPB_090348600,Os09g0349800 OSNPB_090349800,Os09g0352000 OSNPB_090352000,Os09g0355400 OSNPB_090355400,Os09g0349333 OSNPB_090349333,Os09g0349600 OSNPB_090349600,Os09g0359500 OSNPB_090359500,Os09g0351800 OSNPB_090351800,Os09g0358000 OSNPB_090358000,Os09g0354600 OSNPB_090354600,Os09g0351700 OSNPB_090351700,Os09g0356000 OSNPB_090356000,Os09g0348400 OSNPB_090348400,Os09g0349466 OSNPB_090349466,Os09g0353200 OSNPB_090353200,Os09g0355700 OSNPB_090355700,Os09g0350067 OSNPB_090350067,Os09g0390600 OSNPB_090390600 ENOG411E2HN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GXGXG motif Glutamate synthase 2 [NADH], chloroplastic (EC 1.4.1.14) (NADH-dependent glutamate synthase 2) (NADH-GOGAT 2),Os05g0555600 protein (Fragment) Q0DG35,A0A0P0WQ30,A0A0P0WQL3 GLT2_ORYSJ,A0A0P0WQ30_ORYSJ,A0A0P0WQL3_ORYSJ Os05g0555600 LOC_Os05g48200 OJ1214_E03.1 OJ1263_E10.17,Os05g0555600 OSNPB_050555600 FUNCTION: Involved in glutamate biosynthesis. {ECO:0000250}. ENOG411E2HI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate acetyl/butaryl transferase NA NA NA NA NA NA NA ENOG411E2HH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase NA NA NA NA NA NA NA ENOG411E2HK O22222,A0A1P8AZU9,A0A1P8AZU6,F4IKY1,B3H6S7,A8MSD8 O22222_ARATH,A0A1P8AZU9_ARATH,A0A1P8AZU6_ARATH,F4IKY1_ARATH,B3H6S7_ARATH,A8MSD8_ARATH At2g41600/T32G6.12 (Mitochondrial glycoprotein family protein) (Uncharacterized protein At2g41600),Mitochondrial glycoprotein family protein 17088,19963,26384,18404,24991,23510 At2g41600/T32G6.12 (Mitochondrial glycoprotein family protein) (Uncharacterized protein At2g41600),Mitochondrial glycoprotein family protein mitochondrial matrix [GO:0005759] locus:2062667; AT2G41600 NA Mitochondrial glycoprotein, expressed (Os11g0140100 protein) (cDNA clone:J013120E15, full insert sequence),Mitochondrial glycoprotein, expressed (Os11g0140100 protein) (cDNA clone:002-116-A09, full insert sequence),Expressed protein (Os12g0136600 protein) (cDNA clone:002-120-H04, full insert sequence) Q2RAS2,B7E9V8,Q2QY13 Q2RAS2_ORYSJ,B7E9V8_ORYSJ,Q2QY13_ORYSJ LOC_Os11g04440 Os11g0140100 OsJ_32905 OSNPB_110140100,Os11g0140100 LOC_Os11g04440 OSNPB_110140100,Os12g0136600 LOC_Os12g04210 Os12g0136600 OSNPB_120136600 ENOG411E2HJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF827 Os07g0576600 protein,Os05g0550100 protein A0A0N7KNQ8,A0A0P0WQK6 A0A0N7KNQ8_ORYSJ,A0A0P0WQK6_ORYSJ Os07g0576600 OSNPB_070576600,Os05g0550100 OSNPB_050550100 ENOG411E2HE SEC1A Q9C5P7,A0A1P8AMM4,A0A1P8AMM1,A0A1P8AMM7,F4HVU5 SEC1A_ARATH,A0A1P8AMM4_ARATH,A0A1P8AMM1_ARATH,A0A1P8AMM7_ARATH,F4HVU5_ARATH Protein transport Sec1a (AtSec1a),Secretory 1A FUNCTION: Involved in the vesicle trafficking. Binds syntaxins (By similarity). {ECO:0000250}. R-ATH-114608; 76108,59277,72535,79725,74731 Protein transport Sec1a (AtSec1a),Secretory 1A protein transport [GO:0015031]; vesicle docking involved in exocytosis [GO:0006904],vesicle docking involved in exocytosis [GO:0006904],integral component of membrane [GO:0016021]; vesicle docking involved in exocytosis [GO:0006904] locus:2025482; AT1G02010 protein transport Sec1a-like NA NA NA NA NA NA NA ENOG411E2HD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0227200 protein (Putative brassinosteroid insensitive 1-associated receptor kinase 1) (cDNA clone:J033123K23, full insert sequence),Os05g0218400 protein Q8W0B8,A0A0N7KKC7 Q8W0B8_ORYSJ,A0A0N7KKC7_ORYSJ Os01g0227200 Os01g0227200 OSNPB_010227200 P0452F10.7,Os05g0218400 OSNPB_050218400 ENOG411E2HG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY DNA binding domain containing protein expressed Os12g0116600 protein (Fragment),Os11g0117400 protein (Fragment) A0A0P0Y678,A0A0P0XYP5 A0A0P0Y678_ORYSJ,A0A0P0XYP5_ORYSJ Os12g0116600 OSNPB_120116600,Os11g0117400 OSNPB_110117400 ENOG411E2HF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Leaf senescence protein-like (Os06g0273700 protein) Q5VN15 Q5VN15_ORYSJ Os06g0273700 OsJ_20947 OSNPB_060273700 P0676F10.10 ENOG411E2HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Hydroxycinnamoyltransferase 1 (OsHCT1) (EC 2.3.1.-) (BAHD-like hydroxycinnamoyl transferase HCT1),Hydroxycinnamoyltransferase 2 (OsHCT2) (EC 2.3.1.-) (BAHD-like hydroxycinnamoyl transferase HCT2) Q0JBZ8,Q6K638 HCT1_ORYSJ,HCT2_ORYSJ HCT1 Os04g0500700 LOC_Os04g42250 OsJ_15346 OSJNBa0029H02.19,HCT2 Os02g0611800 LOC_Os02g39850 OJ1004_A05.15 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to various acyl acceptors. Can use feruloyl-CoA and caffeoyl-CoA as acyl donors. {ECO:0000250|UniProtKB:Q5SMM6}. ENOG411E2HC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0553700 protein Q0IZR9 Q0IZR9_ORYSJ Os09g0553700 OSNPB_090553700 ENOG411E2HY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0540900 protein (cDNA clone:001-015-C07, full insert sequence) Q5TKQ1 Q5TKQ1_ORYSJ Os05g0540900 OJ1362_G11.7 OSNPB_050540900 ENOG411E2HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD-binding domain NA NA NA NA NA NA NA ENOG411E2HU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain Os02g0643000 protein (Putative vesicle-associated membrane protein-associated protein) (cDNA clone:J033068O06, full insert sequence),Os10g0161625 protein (Fragment) Q6H7R1,A0A0P0XS88 Q6H7R1_ORYSJ,A0A0P0XS88_ORYSJ Os02g0643000 OJ1112_G03.20 OSNPB_020643000,Os10g0161625 OSNPB_100161625 ENOG411E2HT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI Os01g0704000 protein (cDNA clone:J023038A03, full insert sequence) Q94JG2 Q94JG2_ORYSJ Os01g0704000 Os01g0704000 OsJ_03169 OSNPB_010704000 P0421H07.32 P0684B02.7 ENOG411E2HW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF566) NA NA NA NA NA NA NA ENOG411E2HQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD Os11g0292050 protein (Fragment) A0A0P0Y140 A0A0P0Y140_ORYSJ Os11g0292050 OSNPB_110292050 ENOG411E2HP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G_gamma DENSE PANICLE 1 (DEP1) (Os09g0441900 protein) (Putative keratin associated protein),Os09g0441900 protein (Fragment),Os09g0441900 protein Q67UU9,A0A0P0XNX6,A0A0P0XNX1,A0A0P0XNP8 Q67UU9_ORYSJ,A0A0P0XNX6_ORYSJ,A0A0P0XNX1_ORYSJ,A0A0P0XNP8_ORYSJ P0046G12.12-1 DEP1 DN1 Os09g0441900 OsJ_29530 OSNPB_090441900,Os09g0441900 OSNPB_090441900 ENOG411E2HS Q9LK41 Q9LK41_ARATH Beta-1,3-glucanase (Glycosyl hydrolase family 17 protein) (O-Glycosyl hydrolases family 17 protein) ARA:AT3G23770-MONOMER; 52170 Beta-1,3-glucanase (Glycosyl hydrolase family 17 protein) (O-Glycosyl hydrolases family 17 protein) anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; embryo development ending in seed dormancy [GO:0009793]; pollen exine formation [GO:0010584] locus:2095228; AT3G23770 X8 domain NA NA NA NA NA NA NA ENOG411E2H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411E2H8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone Os05g0304800 protein (cDNA, clone: J075149P12, full insert sequence),Histone-like transcription factor and archaeal histone family protein, expressed (Os10g0191900 protein) (Putative transcription binding factor),Os01g0580400 protein (Putative hap5 protein) (Transcription binding factor) (Transcription binding factor-like),Os01g0102400 protein (cDNA, clone: J075175B02, full insert sequence) (p0402A09.22 protein) (p0455C04.16 protein) Q0DJB5,Q8LMX6,Q8W099,Q93VF0 Q0DJB5_ORYSJ,Q8LMX6_ORYSJ,Q8W099_ORYSJ,Q93VF0_ORYSJ Os05g0304800 Os05g0304800 OsJ_17980 OSNPB_050304800,LOC_Os10g11580 Os10g0191900 OsJ_30954 OSJNBa0040E17.2 OSNPB_100191900,HAP5 Os01g0580400 OsJ_02344 OSNPB_010580400 P0672C09.23,P0402A09.22 P0455C04.16 Os01g0102400 OsJ_00019 OSNPB_010102400 P0672D08.43 ENOG411E2H5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411E2H4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Response regulator receiver domain Two-component response regulator ORR28 (OsRRA22),Two-component response regulator ORR29 (OsRRB7),Os04g0348600 protein,Os04g0348800 protein,Os04g0349000 protein,Os04g0349100 protein Q7XKS9,Q7XS69,A0A0P0W8Y3,A0A0P0W9M9,A0A0P0W8S8,A0A0P0W926 ORR28_ORYSJ,ORR29_ORYSJ,A0A0P0W8Y3_ORYSJ,A0A0P0W9M9_ORYSJ,A0A0P0W8S8_ORYSJ,A0A0P0W926_ORYSJ RR28 Os04g0349100 LOC_Os04g28160 OsJ_14368 OSJNBa0038P21.2,RR29 Os04g0348800 LOC_Os04g28130 OSJNBa0020I02.17,Os04g0348600 OSNPB_040348600,Os04g0348800 OSNPB_040348800,Os04g0349000 OSNPB_040349000,Os04g0349100 OSNPB_040349100 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering and altered kernel color. {ECO:0000269|PubMed:16891544}.,DISRUPTION PHENOTYPE: Dwarf, narrow leaf, lesion mimic, low tillering and late heading phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.,FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. ENOG411E2H7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHROMO NA NA NA NA NA NA NA ENOG411E2H6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os01g0186900 protein (cDNA clone:001-117-G12, full insert sequence),Os01g0186900 protein,Os01g0186900 protein (Fragment) B7EXU7,Q0JQ17,A0A0P0UZH8 B7EXU7_ORYSJ,Q0JQ17_ORYSJ,A0A0P0UZH8_ORYSJ Os01g0186900 OSNPB_010186900,Os01g0186900 Os01g0186900 OSNPB_010186900 ENOG411E2H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os01g0823500 protein (Ovate family protein-like) (cDNA clone:002-105-A08, full insert sequence) Q5JN79 Q5JN79_ORYSJ Os01g0823500 OsJ_03909 OSNPB_010823500 P0031D02.16 ENOG411E2H0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E2H2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain Putative B3 domain-containing protein Os06g0632500 Q67VL7 Y6325_ORYSJ Os06g0632500 LOC_Os06g42630 P0505A04.21 ENOG411EA87 APUM15 P0DN95 PUM15_ARATH Pumilio homolog 15 (APUM-15) (AtPUM15) FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 51705 Pumilio homolog 15 (APUM-15) (AtPUM15) cytoplasm [GO:0005737]; RNA binding [GO:0003723]; regulation of translation [GO:0006417] locus:2133534; AT4G08560 Pumilio-family RNA binding repeat NA NA NA NA NA NA NA ENOG411EA84 CXE4 Q9FX93 CXE4_ARATH Probable carboxylesterase 4, mitochondrial (AtCXE4) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT1G49650-MONOMER; 3.1.1.1 41693 Probable carboxylesterase 4, mitochondrial (AtCXE4) (EC 3.1.1.1) mitochondrion [GO:0005739]; carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2012131; AT1G49650 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EA85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os06g0148600 protein (cDNA clone:001-123-E10, full insert sequence) (cDNA clone:J033094B14, full insert sequence),Os06g0148300 protein,Os06g0148700 protein (Fragment) Q5VPK3,Q5VPK5,A0A0P0WSK5 Q5VPK3_ORYSJ,Q5VPK5_ORYSJ,A0A0P0WSK5_ORYSJ Os06g0148600 OSNPB_060148600 P0624B04.10,Os06g0148300 OSNPB_060148300 P0624B04.6,Os06g0148700 OSNPB_060148700 ENOG411EA82 TIFY11A,JAZ5 Q9LDU5,A0A1P8APG1,A0A1P8AP92 TI11A_ARATH,A0A1P8APG1_ARATH,A0A1P8AP92_ARATH Protein TIFY 11A (Jasmonate ZIM domain-containing protein 5),Jasmonate-zim-domain protein 5 FUNCTION: Repressor of jasmonate responses. {ECO:0000269|PubMed:19151223, ECO:0000269|PubMed:21335373}. 30343,27665,24530 Protein TIFY 11A (Jasmonate ZIM domain-containing protein 5),Jasmonate-zim-domain protein 5 nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:2018804; AT1G17380 jasmonate-zim-domain protein 5 NA NA NA NA NA NA NA ENOG411EA83 Q8GUN3,Q0WUN1,A0A1P8B3K4 Q8GUN3_ARATH,Q0WUN1_ARATH,A0A1P8B3K4_ARATH Uncharacterized protein At4g28150,Uncharacterized protein 33294,33065,23507 Uncharacterized protein At4g28150,Uncharacterized protein locus:2123718; AT4G28150 Protein of unknown function (DUF789) NA NA NA NA NA NA NA ENOG411EA80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phage integrase family NA NA NA NA NA NA NA ENOG411EA8W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oligosaccharyl transferase STT3 subunit NA NA NA NA NA NA NA ENOG411EA8U UBP18 Q67XW5 UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 (EC 3.4.19.12) (Deubiquitinating enzyme 18) (AtUBP18) (Ubiquitin thioesterase 18) (Ubiquitin-specific-processing protease 18) FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT4G31670-MONOMER; 3.4.19.12 70753 Ubiquitin carboxyl-terminal hydrolase 18 (EC 3.4.19.12) (Deubiquitinating enzyme 18) (AtUBP18) (Ubiquitin thioesterase 18) (Ubiquitin-specific-processing protease 18) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2124809; AT4G31670 MYND finger NA NA NA NA NA NA NA ENOG411EA8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411EA8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0035O13.1 protein (OSJNBa0052O21.18 protein) (Os04g0207000 protein),Os04g0207100 protein Q7XWK0,A0A0P0W7D4 Q7XWK0_ORYSJ,A0A0P0W7D4_ORYSJ Os04g0207000 OsJ_13830 OSJNBa0035O13.1 OSJNBa0052O21.18 OSNPB_040207000,Os04g0207100 OSNPB_040207100 ENOG411EA8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EA8E O64784 Y1136_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360 (EC 2.7.11.1) 2.7.11.1 90934 G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544] locus:2197649; AT1G61360 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EA8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA8M O80720 O80720_ARATH Invertase/pectin methylesterase inhibitor family protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Putative pectinesterase) 23776 Invertase/pectin methylesterase inhibitor family protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Putative pectinesterase) cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2041354; AT2G47050 Invertase pectin methylesterase inhibitor family protein NA NA NA NA NA NA NA ENOG411EA8I Q9M8Z8,A0A1I9LSL6 PLY8_ARATH,A0A1I9LSL6_ARATH Probable pectate lyase 8 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. ARA:AT3G07010-MONOMER; 4.2.2.2 46174,42803 Probable pectate lyase 8 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2077622; AT3G07010 Pectate lyase NA NA NA NA NA NA NA ENOG411DUQ4 TATC Q9SJV5 TATC_ARATH Sec-independent protein translocase protein TATC, chloroplastic (Protein ALBINO AND PALE GREEN 2) (Protein TWIN-ARGININE TRANSLOCATION C) (Protein UNFERTILIZED EMBRYO SAC 3) DISRUPTION PHENOTYPE: Seedling lethality when homozygous. When grown on agar medium, mutant seedlings have an albino phenotype and contain plastid lacking internal membrane structures. {ECO:0000269|PubMed:11526245}. Seedling lethal; Albino and pale green seedlings-K. Sinozaki-2001 FUNCTION: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation. {ECO:0000269|PubMed:11526245}. MISCELLANEOUS: According to PubMed:18930082, TATA is detectable only in minor amounts in Arabidopsis chloroplasts. 37367 Sec-independent protein translocase protein TATC, chloroplastic (Protein ALBINO AND PALE GREEN 2) (Protein TWIN-ARGININE TRANSLOCATION C) (Protein UNFERTILIZED EMBRYO SAC 3) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of thylakoid membrane [GO:0031361]; receptor complex [GO:0043235]; TAT protein transport complex [GO:0033281]; proton motive force dependent protein transmembrane transporter activity [GO:0009977]; double fertilization forming a zygote and endosperm [GO:0009567]; intracellular protein transmembrane transport [GO:0065002]; protein transport by the Tat complex [GO:0043953]; thylakoid membrane organization [GO:0010027] locus:2045750; AT2G01110 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development especially thylakoid membrane formation. TATC and TATB mediate precursor recognition whereas TATA facilitates translocation Sec-independent protein translocase protein TATC, chloroplastic (Protein TWIN-ARGININE TRANSLOCATION C) (OsTATC) Q9AVE6 TATC_ORYSJ TATC Os01g0501700 LOC_Os01g31680 B1080D07.26 OsJ_01920 DISRUPTION PHENOTYPE: Pale green phenotype. Mutant plants have low levels of chlorophyll, show quick water loss and fail to accumulate ABA under drought. {ECO:0000269|PubMed:11244106}. FUNCTION: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation (By similarity). {ECO:0000250}. ENOG411DUQ5 Q7XJ64,F4I181 Q7XJ64_ARATH,F4I181_ARATH Defective in cullin neddylation protein FUNCTION: Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. {ECO:0000256|RuleBase:RU410713}. R-ATH-8951664; 26640,27734 Defective in cullin neddylation protein ubiquitin ligase complex [GO:0000151]; cullin family protein binding [GO:0097602]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin-like protein binding [GO:0032182]; positive regulation of ubiquitin-protein transferase activity [GO:0051443]; protein neddylation [GO:0045116] locus:2036234; AT1G15860 DCN1-like protein Defective in cullin neddylation protein A0A0P0XGG0 A0A0P0XGG0_ORYSJ Os08g0439150 OSNPB_080439150 FUNCTION: Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. {ECO:0000256|RuleBase:RU410713}. ENOG411DUQ8 Q9LTW3,Q9FIZ5 Q9LTW3_ARATH,Q9FIZ5_ARATH DNA glycosylase superfamily protein (DNA-3-methyladenine glycosidase I-like protein),DNA glycosylase superfamily protein (Similarity to DNA-3-methyladenine glycosylase I) (Uncharacterized protein At5g44680) ARA:AT3G12710-MONOMER;,ARA:AT5G44680-MONOMER; 34916,39506 DNA glycosylase superfamily protein (DNA-3-methyladenine glycosidase I-like protein),DNA glycosylase superfamily protein (Similarity to DNA-3-methyladenine glycosylase I) (Uncharacterized protein At5g44680) DNA-3-methyladenine glycosylase activity [GO:0008725]; base-excision repair [GO:0006284] locus:2087710;,locus:2156329; AT3G12710,AT5G44680 glycosylase Os01g0799500 protein (Putative DNA-3-methyladenine glycosylase I) (cDNA clone:006-203-E05, full insert sequence) Q5VQI7 Q5VQI7_ORYSJ Os01g0799500 Os01g0799500 OsJ_03762 OSNPB_010799500 P0691E06.23 ENOG411DUQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1644) OSJNBa0064H22.8 protein (Os04g0448100 protein) (cDNA clone:002-150-H06, full insert sequence) Q7XTD0 Q7XTD0_ORYSJ Os04g0448100 Os04g0448100 OsJ_14965 OSJNBa0064H22.8 OSNPB_040448100 ENOG411DUQF Q9SJ42,Q84TI2 Q9SJ42_ARATH,Q84TI2_ARATH Phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (Putative phosphoribosylaminoimidazole carboxylase),Phosphoribosylaminoimidazole carboxylase like protein (Phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase) (Putative phosphoribosylaminoimidazole carboxylase) ARA:AT2G05140-MONOMER; 17418,69752 Phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (Putative phosphoribosylaminoimidazole carboxylase),Phosphoribosylaminoimidazole carboxylase like protein (Phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase) (Putative phosphoribosylaminoimidazole carboxylase) 'de novo' IMP biosynthetic process [GO:0006189],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; phosphoribosylaminoimidazole carboxylase activity [GO:0004638]; 'de novo' IMP biosynthetic process [GO:0006189]; pollen development [GO:0009555] locus:2051314;,locus:2040771; AT2G05140,AT2G37690 phosphoribosylaminoimidazole carboxylase Os01g0199900 protein (Putative phosphoribosylaminoimidazole carboxylase, chloroplast) (cDNA clone:J013129D15, full insert sequence),Os01g0200175 protein Q5QN02,A0A0P0UZH5 Q5QN02_ORYSJ,A0A0P0UZH5_ORYSJ B1046G12.39 Os01g0199900 B1015E06.1 OSNPB_010199900,Os01g0200175 OSNPB_010200175 ENOG411DUQG Q9LKB2 Q9LKB2_ARATH Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein ARA:AT3G14920-MONOMER; 68996 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773] locus:2086285; AT3G14920 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase Os01g0207200 protein (cDNA clone:J033126B18, full insert sequence) Q8LRJ4 Q8LRJ4_ORYSJ Os01g0207200 OSJNBa0016I09.9 OSNPB_010207200 ENOG411DUQE PCH2 Q8H1F9,A0A1P8B3Y3,A0A1P8B3X3 PCH2_ARATH,A0A1P8B3Y3_ARATH,A0A1P8B3X3_ARATH Pachytene checkpoint protein 2 homolog (AtPCH2),Pachytene checkpoint-like protein DISRUPTION PHENOTYPE: Reduced fertility. Reduced number of seeds. {ECO:0000269|PubMed:26182244}. FUNCTION: Plays a key role in chromosome recombination during meiosis. Mediates meiotic chromosome remodeling and crossover maturation. {ECO:0000269|PubMed:26182244}. 51704,38871,53048 Pachytene checkpoint protein 2 homolog (AtPCH2),Pachytene checkpoint-like protein chromosome [GO:0005694]; ATP binding [GO:0005524]; synapsis [GO:0007129],ATP binding [GO:0005524] AT4G24710 Pachytene checkpoint protein 2 homolog Pachytene checkpoint protein 2 homolog (Protein CENTRAL REGION COMPONENT 1),Os04g0479000 protein (Fragment) Q7XK25,A0A0P0WBQ0 PCH2_ORYSJ,A0A0P0WBQ0_ORYSJ CRC1 Os04g0479000 LOC_Os04g40290 OsJ_15194 OSJNBa0044K18.20,Os04g0479000 OSNPB_040479000 DISRUPTION PHENOTYPE: Male and female sterility due to defects in meiosis. {ECO:0000269|PubMed:23943860}. FUNCTION: Plays a key role in chromosome recombination during meiosis. Required for the initiation of meiotic recombination and the recruitment of PAIR2 onto meiotic chromosomes. Essential for meiotic DNA double-strand break (DSB) formation. ENOG411DUQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0492800 protein A0A0P0XVP3 A0A0P0XVP3_ORYSJ Os10g0492800 OSNPB_100492800 ENOG411DUQC Q9M8K3,Q5XV39 Q9M8K3_ARATH,Q5XV39_ARATH Cytochrome P450 family protein (F28L1.9 protein),Cytochrome P450 family protein 67574,63004 Cytochrome P450 family protein (F28L1.9 protein),Cytochrome P450 family protein locus:2082455;,locus:2179644; AT3G06150,AT5G19060 NA Os05g0396900 protein (cDNA clone:J023030B10, full insert sequence) (cDNA clone:J023030B11, full insert sequence) Q75HV8 Q75HV8_ORYSJ Os05g0396900 Os05g0396900 OsJ_18453 OSJNBb0092G21.7 OSNPB_050396900 ENOG411DUQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0194000 protein (Fragment) A0A0P0UZS6,A0A0P0UZ59 A0A0P0UZS6_ORYSJ,A0A0P0UZ59_ORYSJ Os01g0194000 OSNPB_010194000 ENOG411DUQR TOL3 Q9LPL6 TOL3_ARATH TOM1-like protein 3 FUNCTION: Might contribute to the loading of the ESCRT machinery. {ECO:0000305|PubMed:16488176}. 55791 TOM1-like protein 3 intracellular [GO:0005622]; membrane [GO:0016020]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Preferentially expressed in cauline leaves. {ECO:0000269|PubMed:24699223}. locus:2027037; AT1G21380 VHS and GAT domain containing protein expressed Os11g0199700 protein (VHS domain containing protein, expressed) (cDNA clone:J033067D16, full insert sequence) Q2R9B5 Q2R9B5_ORYSJ Os11g0199700 LOC_Os11g09329 Os11g0199700 OSNPB_110199700 ENOG411DUQS UFC Q9LX14,A0A1P8BC94,A0A1P8BC74,A0A1P8BC89 UFC_ARATH,A0A1P8BC94_ARATH,A0A1P8BC74_ARATH,A0A1P8BC89_ARATH Protein UPSTREAM OF FLC,UPSTREAM OF FLC protein (DUF966) FUNCTION: Part of a three-gene cluster containing FLC, UFC and DFC, which is coordinately regulated in response to vernalization. Also regulated by FLX. {ECO:0000269|PubMed:15186749}. 47953,45991,38396,36435 Protein UPSTREAM OF FLC,UPSTREAM OF FLC protein (DUF966) locus:2184133; AT5G10150 function DUF966 domain containing protein expressed Expressed protein (Os03g0192300 protein) Q10QL7 Q10QL7_ORYSJ Os03g0192300 LOC_Os03g09200 OSNPB_030192300 ENOG411E1KF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif Kelch motif family protein, expressed (Os12g0540800 protein) (cDNA clone:J023099E22, full insert sequence),Os12g0540800 protein (Fragment) Q2QP63,A0A0P0YAX1 Q2QP63_ORYSJ,A0A0P0YAX1_ORYSJ LOC_Os12g35560 Os12g0540800 OSNPB_120540800,Os12g0540800 OSNPB_120540800 ENOG411DUQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA Os12g0168800 protein Q0IPT9 Q0IPT9_ORYSJ Os12g0168800 Os12g0168800 OSNPB_120168800 ENOG411DUQY SIGB O22056 SIGB_ARATH RNA polymerase sigma factor sigB (Sigma factor B) (Sigma-B) (Protein ABERRANT CHLOROPLAST 1) (RNA polymerase sigma factor sig1) (Atsig1) (Sigma factor 1) (RNA polymerase sigma factor sig2) (Atsig2) (Sigma factor 2) (RNA polymerase sigma factor sigA) (Sigma factor A) (Sigma-A) DISRUPTION PHENOTYPE: Pale green seedlings exhibiting a strong reduction in plastid-encoded tRNA levels. Aberrant chloroplast development; normal etioplast in darkness, but abnormal chloroplast in light characterized by small size, poor thylakoid membranes and stacked lamellae. {ECO:0000269|PubMed:11094163, ECO:0000269|PubMed:11673617, ECO:0000269|PubMed:14654684}. Pale green-D. Shibata-2000 FUNCTION: Required for the transition of plastids into chloroplasts by coordinating nuclear and chloroplastic genomes under light conditions. Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. Promotes the biosynthesis of plastid-encoded tRNAs (e.g. trnE-UUC and trnV-UAC). {ECO:0000269|PubMed:10734058, ECO:0000269|PubMed:11094163, ECO:0000269|PubMed:11673617, ECO:0000269|PubMed:12602869, ECO:0000269|PubMed:14654684, ECO:0000269|PubMed:14976253}. 64054 RNA polymerase sigma factor sigB (Sigma factor B) (Sigma-B) (Protein ABERRANT CHLOROPLAST 1) (RNA polymerase sigma factor sig1) (Atsig1) (Sigma factor 1) (RNA polymerase sigma factor sig2) (Atsig2) (Sigma factor 2) (RNA polymerase sigma factor sigA) (Sigma factor A) (Sigma-A) chloroplast [GO:0009507]; DNA binding [GO:0003677]; plastid sigma factor activity [GO:0001053]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to light stimulus [GO:0071482]; chloroplast organization [GO:0009658]; DNA-templated transcription, initiation [GO:0006352]; regulation of RNA biosynthetic process [GO:2001141]; response to red light [GO:0010114]; tRNA metabolic process [GO:0006399] TISSUE SPECIFICITY: Highly expressed in cotyledons, to a lesser extent in leaves, sepals and siliques, and barely expressed in roots. Present in seedlings. {ECO:0000269|PubMed:10555304, ECO:0000269|PubMed:10946105, ECO:0000269|PubMed:12602869, ECO:0000269|PubMed:14976253, ECO:0000269|PubMed:15807777, ECO:0000269|PubMed:9405719}. locus:2025650; AT1G08540 RNA polymerase sigma factor RNA polymerase sigma factor,Os11g0448400 protein (Sigma-70 region 3, putative),Os11g0448400 protein (Fragment) Q84Q84,Q53KH7,A0A0P0Y206 Q84Q84_ORYSJ,Q53KH7_ORYSJ,A0A0P0Y206_ORYSJ OJ1261C08.7 OsSig2B LOC_Os03g16430 Os03g0271100 OSNPB_030271100,Os11g0448400 OSNPB_110448400 FUNCTION: Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. {ECO:0000256|PIRNR:PIRNR000767}. ENOG411EHM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Complex 1 protein (LYR family) NA NA NA NA NA NA NA ENOG411EHMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EHMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os12g0578800 protein (Fragment) A0A0N7KU96 A0A0N7KU96_ORYSJ Os12g0578800 OSNPB_120578800 ENOG411DRFP DOF1.2 P68349 DOF12_ARATH Dof zinc finger protein DOF1.2 (AtDOF1.2) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 29679 Dof zinc finger protein DOF1.2 (AtDOF1.2) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2027027; AT1G21340 zinc finger protein Os01g0865800 protein A0A0P0VAX4 A0A0P0VAX4_ORYSJ Os01g0865800 OSNPB_010865800 ENOG411DRF1 TDP1 Q8H1D9 TYDP1_ARATH Tyrosyl-DNA phosphodiesterase 1 (AtTDP) (Tyr-DNA phosphodiesterase 1) (EC 3.1.4.-) DISRUPTION PHENOTYPE: Developmental defects, including loss of apical dominance, early flowering and dwarf phenotype, when homozygous (PubMed:20876339). Hypersensitivity to camptothecin and failure of DNA damage repair resulting in progressive cell death (PubMed:20876339). No visible phenotype when heterozygous (PubMed:20876339). {ECO:0000269|PubMed:20876339}. Dwarf; Increased branching; Early flowering-S. Kim-2010 FUNCTION: DNA repair enzyme that can remove a variety of covalent adducts from DNA through hydrolysis of a 3'-phosphodiester bond, giving rise to DNA with a free 3' phosphate. Catalyzes the hydrolysis of dead-end complexes between DNA and the topoisomerase I active site tyrosine residue. {ECO:0000269|PubMed:20876339, ECO:0000269|PubMed:22214184}. 3.1.4.1; 3.1.4.- 68139 Tyrosyl-DNA phosphodiesterase 1 (AtTDP) (Tyr-DNA phosphodiesterase 1) (EC 3.1.4.-) nucleus [GO:0005634]; 3'-tyrosyl-DNA phosphodiesterase activity [GO:0017005]; double-stranded DNA binding [GO:0003690]; exonuclease activity [GO:0004527]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281]; double-strand break repair [GO:0006302]; single strand break repair [GO:0000012] TISSUE SPECIFICITY: Ubiquitous, with a low level in roots. {ECO:0000269|PubMed:20876339}. locus:2150931; AT5G15170 Tyrosyl-DNA phosphodiesterase Os07g0530100 protein (Putative tyrosyl-DNA phosphodiesterase) (cDNA clone:J023010I17, full insert sequence) Q7XHY3 Q7XHY3_ORYSJ P0681F05.112 Os07g0530100 OsJ_24533 OSNPB_070530100 ENOG411E1K6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Poly(ADP-ribose) polymerase catalytic domain Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) Q654Q5,Q0J949 Q654Q5_ORYSJ,Q0J949_ORYSJ Os06g0248400 OSJNBa0091G06.7 OSNPB_060248400,Os04g0672200 Os04g0672200 OSNPB_040672200 ENOG411E1K5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:YDG_SRA Os01g0811300 protein (Putative SET domain protein 113),Os05g0490700 protein (cDNA clone:J023004N15, full insert sequence) Q8RUS3,Q6F322 Q8RUS3_ORYSJ,Q6F322_ORYSJ Os01g0811300 OSNPB_010811300 P0425G02.11 P0468B07.48,Os05g0490700 OsJ_19021 OSJNBa0088I06.5 OSNPB_050490700 ENOG411DVW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Probable glucomannan 4-beta-mannosyltransferase 7 (EC 2.4.1.32) (Cellulose synthase-like protein A7) (OsCslA7) (Glucomannan synthase) (Mannan synthase 7),Os07g0630900 protein Q7XIF5,A0A0P0X909 CSLA7_ORYSJ,A0A0P0X909_ORYSJ CSLA7 Os07g0630900 LOC_Os07g43710 P0011H09.139,Os07g0630900 OSNPB_070630900 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q7PC76}. ENOG411DSZ5 EXL3,EXL5 Q9FHM9,Q9SII5 EXOL3_ARATH,EXOL5_ARATH Protein EXORDIUM-like 3,Protein EXORDIUM-like 5 FUNCTION: May play a role in a brassinosteroid-dependent regulation of growth and development. {ECO:0000250}. 36848,39641 Protein EXORDIUM-like 3,Protein EXORDIUM-like 5 apoplast [GO:0048046]; extracellular space [GO:0005615]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; response to karrikin [GO:0080167],apoplast [GO:0048046]; extracellular space [GO:0005615] locus:2153087;,locus:2059652; AT5G51550,AT2G17230 phosphate-induced protein 1 conserved region domain containing protein expressed Os06g0133600 protein (Putative phi-1) (cDNA clone:001-201-C03, full insert sequence) Q9FPB8 Q9FPB8_ORYSJ Os06g0133600 134P10.10 Os06g0133600 OSNPB_060133600 P0679C08.35 ENOG411E6TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411DSZH LAF1,MYB19 Q9M0K4,Q9LTJ5,A0A1P8B4Z5 LAF1_ARATH,Q9LTJ5_ARATH,A0A1P8B4Z5_ARATH Transcription factor LAF1 (Myb-related protein 18) (AtMYB18) (Protein LONG AFTER FAR-RED LIGHT 1),MYB transcription factor (Myb domain protein 19) (Similarity to myb-related transcription factor),Myb domain protein 18 DISRUPTION PHENOTYPE: Partially blind to far-red (FR). Impaired inhibition of hypocotyl elongation and cotyledons expansion under continuous FR light conditions. {ECO:0000269|PubMed:19482971}. Long hypocotyl under far-red light-N. Chua-2001 FUNCTION: Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. 32433,31179,24631 Transcription factor LAF1 (Myb-related protein 18) (AtMYB18) (Protein LONG AFTER FAR-RED LIGHT 1),MYB transcription factor (Myb domain protein 19) (Similarity to myb-related transcription factor),Myb domain protein 18 nuclear speck [GO:0016607]; nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; far-red light signaling pathway [GO:0010018]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to red or far red light [GO:0009639]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. locus:2131844;,locus:2145121; AT4G25560,AT5G52260 Transcription factor OSJNBb0039L24.8 protein (Os04g0532800 protein) (cDNA clone:002-124-C09, full insert sequence),Os02g0641300 protein Q7XML0,A0A0P0VM47 Q7XML0_ORYSJ,A0A0P0VM47_ORYSJ Os04g0532800 Os04g0532800 OSJNBb0039L24.8 OSNPB_040532800,Os02g0641300 OSNPB_020641300 ENOG411DSZK Q9FKT4,Q8GWR3,Q0WLR1,A0A1P8B8G6 QKIL2_ARATH,QKIL5_ARATH,QKIL1_ARATH,A0A1P8B8G6_ARATH KH domain-containing protein At5g56140 (Quaking-like protein 2),KH domain-containing protein At1g09660/At1g09670 (Quaking-like protein 5),KH domain-containing protein At4g26480 (Quaking-like protein 1),RNA-binding KH domain-containing protein R-ATH-8849468; 33985,33688,33588,24853 KH domain-containing protein At5g56140 (Quaking-like protein 2),KH domain-containing protein At1g09660/At1g09670 (Quaking-like protein 5),KH domain-containing protein At4g26480 (Quaking-like protein 1),RNA-binding KH domain-containing protein nucleus [GO:0005634]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2161845;,locus:2024326;,locus:2131468; AT5G56140,AT1G09660,AT4G26480 KH domain-containing protein Os02g0722700 protein (cDNA, clone: J100073F21, full insert sequence),Os05g0419500 protein (cDNA clone:J033072E16, full insert sequence),Os01g0886300 protein (QUAKING isoform 5-like) (cDNA clone:J013001M07, full insert sequence) B7FAH5,Q60DW1,Q5N8G9 B7FAH5_ORYSJ,Q60DW1_ORYSJ,Q5N8G9_ORYSJ Os02g0722700 OSNPB_020722700,Os05g0419500 Os05g0419500 OsJ_18578 OSNPB_050419500 P0426G01.11,P0408G07.28-1 P0434C04.7-1 Os01g0886300 OsJ_04338 OSNPB_010886300 ENOG411DSZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein F-box domain containing protein, expressed (Os03g0562200 protein) (cDNA clone:006-209-C04, full insert sequence) (cDNA clone:J023147M15, full insert sequence) Q10I71 Q10I71_ORYSJ LOC_Os03g36439 Os03g0562200 OSNPB_030562200 ENOG411DSZA GEX1 Q681K7,A0A1P8B9H8,A0A1P8B9F8,A0A1P8B9F7 GEX1_ARATH,A0A1P8B9H8_ARATH,A0A1P8B9F8_ARATH,A0A1P8B9F7_ARATH Protein GAMETE EXPRESSED 1,Gamete expressed protein 1 DISRUPTION PHENOTYPE: Embryo lethal when homozygote. {ECO:0000269|PubMed:21831199}. FUNCTION: Has a dual function during gametophyte development and early embryogenesis. Required for correct pollen maturation. {ECO:0000269|PubMed:21831199}. 67963,45879,52760,58779 Protein GAMETE EXPRESSED 1,Gamete expressed protein 1 integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; identical protein binding [GO:0042802]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; pollen development [GO:0009555],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: In tricellular pollen, expressed in mature sperm cells. Not expressed in bicellular or unicellular pollen. Detected in ovules, roots and guard cells. Expressed in the embryo sac before cellularization, in the egg cell after cellularization, in the zygote/embryo immediately after fertilization and in the pollen vegetative cell. {ECO:0000269|PubMed:16055690, ECO:0000269|PubMed:21831199}. locus:2173877; AT5G55490 NA Os07g0668100 protein (cDNA clone:002-114-E04, full insert sequence) B7EZK4 B7EZK4_ORYSJ Os07g0668100 OSNPB_070668100 ENOG411E7RC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0111700 protein (cDNA clone:002-152-H07, full insert sequence) Q9ASJ0 Q9ASJ0_ORYSJ Os01g0111700 OsJ_00094 OSJNBb0032H19.1 OSNPB_010111700 P0439B06.27 ENOG411EKU9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKU8 NMAT2 Q9FJR9 NMAT2_ARATH Nuclear intron maturase 2, mitochondrial (AtnMat2) (EC 3.1.-.-) (Nuclear intron maturase 1 b) (AtnMat1b) DISRUPTION PHENOTYPE: Low germination, slow growth, and late flowering, as well as partial sterile of both male and female gametes. Small, pale and round-shaped leaves. Impaired splicing of mitochondrial group-II introns-containing COX2, NAD1 and NAD7 transcripts (PubMed:19946041). Abnormal mitochondrial mor-phology, including low-density cristae (PubMed:22429648). {ECO:0000269|PubMed:19946041, ECO:0000269|PubMed:22429648}. FUNCTION: Nuclear-encoded maturase required for splicing of group-II introns in mitochondria. Involved in the splicing of mitochondrial COX2, NAD1 and NAD7 transcripts (PubMed:19946041). Necessary for mitochondrial biogenesis during early developmental stages (PubMed:22429648). {ECO:0000269|PubMed:19946041, ECO:0000269|PubMed:22429648}. 3.1.-.- 85180 Nuclear intron maturase 2, mitochondrial (AtnMat2) (EC 3.1.-.-) (Nuclear intron maturase 1 b) (AtnMat1b) mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; Group II intron splicing [GO:0000373]; intron homing [GO:0006314]; mitochondrial mRNA processing [GO:0090615]; mitochondrion organization [GO:0007005] locus:2170992; AT5G46920 Type II intron maturase NA NA NA NA NA NA NA ENOG411EKU2 F4JFF2,A0A1I9LT31 F4JFF2_ARATH,A0A1I9LT31_ARATH Nucleotidyltransferase 144859,139217 Nucleotidyltransferase mRNA binding [GO:0003729]; nucleotidyltransferase activity [GO:0016779],nucleotidyltransferase activity [GO:0016779] locus:2076795; AT3G61690 Nucleotidyltransferase domain NA NA NA NA NA NA NA ENOG411EKU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EKUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type II intron maturase Os06g0659200 protein Q0DAE7 Q0DAE7_ORYSJ Os06g0659200 Os06g0659200 OSNPB_060659200 ENOG411EKUJ NMAT1 Q9C8R8 NMAT1_ARATH Nuclear intron maturase 1, mitochondrial (AtnMat1) (EC 3.1.-.-) (Nuclear intron maturase 1 a) (AtnMat1a) (Protein CHANGED SENSITIVITY TO CELLULOSE SYNTHESIS INHIBITORS 1) DISRUPTION PHENOTYPE: Slightly slower growth rate. Impaired splicing of mitochondrial group-II introns-containing NAD4 transcript and altered carbon metabolism. Altered fundamental metabolic pathways including amino acid metabolism, triacylglycerol degradation and polysaccharide synthesis (cellulose and starch) during the early stage of plant growth. Reduced sensitivity to 2,6-dichlorobenzonitrile (DCB) and isoxaben treatments, cellulose biosynthesis inhibitors. Increased sensitivity to sugar concentration of the medium (PubMed:16621844). Retarded growth and developmental phenotypes (e.g. reduced germination efficiency, altered primary root elongation and impaired vegetative growth and fertility) and modified respiration activities. Altered stress responses characterized by high levels accumulation of reactive oxygen species (ROS) and darker and reddish leaves. Abnormal mitochondrial mor- phology (PubMed:22429648). {ECO:0000269|PubMed:16621844, ECO:0000269|PubMed:22429648}. Slow growth; Resistant to DCB (inhibitor of cellulose synthesis)-N. Sakurai-2006 FUNCTION: Nuclear-encoded maturase required for splicing of group-II introns in mitochondria (PubMed:16621844, PubMed:22429648). Necessary for mitochondrial biogenesis during early developmental stages (PubMed:22429648). Involved in the splicing of mitochondrial NAD4 transcripts (PubMed:16621844). Required for trans-splicing of NAD1 intron 1 and also functions in cis-splicing of NAD2 intron 1 and NAD4 intron 2 (PubMed:22429648). Required for the regulation of fundamental metabolic pathways such as amino acid metabolism, triacylglycerol degradation and polysaccharide synthesis (cellulose and starch) during the early stage of plant growth (PubMed:16621844). Implicated in stress responses (PubMed:22429648). {ECO:0000269|PubMed:16621844, ECO:0000269|PubMed:22429648}. 3.1.-.- 81537 Nuclear intron maturase 1, mitochondrial (AtnMat1) (EC 3.1.-.-) (Nuclear intron maturase 1 a) (AtnMat1a) (Protein CHANGED SENSITIVITY TO CELLULOSE SYNTHESIS INHIBITORS 1) mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; Group II intron splicing [GO:0000373]; Group III intron splicing [GO:0000374]; growth [GO:0040007]; intron homing [GO:0006314]; mitochondrial mRNA processing [GO:0090615]; mitochondrion organization [GO:0007005]; regulation of cellular amino acid metabolic process [GO:0006521]; regulation of cellulose biosynthetic process [GO:2001006]; regulation of polysaccharide biosynthetic process [GO:0032885]; regulation of triglyceride catabolic process [GO:0010896]; seed germination [GO:0009845]; seedling development [GO:0090351]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed at low levels in seedlings and accumulates in adult plants. {ECO:0000269|PubMed:16621844}. locus:2198309; AT1G30010 Type II intron maturase NA NA NA NA NA NA NA ENOG411EKUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EKUH Q9SZD8,O80781,Q3E7D7,Q1G3K1,F4KCZ1,Q3E8I3 Q9SZD8_ARATH,O80781_ARATH,Q3E7D7_ARATH,Q1G3K1_ARATH,F4KCZ1_ARATH,Q3E8I3_ARATH Putative reverse transcriptase/RNA-dependent DNA polymerase (Ribonuclease H-like superfamily protein) (Uncharacterized protein AT4g29090) (Uncharacterized protein F19B15.120),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Putative non-LTR retroelement reverse transcriptase),Reverse transcriptase-like protein,Ribonuclease H,Polynucleotidyl transferase, ribonuclease H-like superfamily protein 66713,34221,41648,17069,21947,15041 Putative reverse transcriptase/RNA-dependent DNA polymerase (Ribonuclease H-like superfamily protein) (Uncharacterized protein AT4g29090) (Uncharacterized protein F19B15.120),Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Putative non-LTR retroelement reverse transcriptase),Reverse transcriptase-like protein,Ribonuclease H,Polynucleotidyl transferase, ribonuclease H-like superfamily protein nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964],nucleic acid binding [GO:0003676],nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; transferase activity [GO:0016740] locus:2119886;,locus:2040899;,locus:2150210;,locus:4515103333;,locus:2152242;,locus:504954955; AT4G29090,AT2G34320,AT5G19270,AT4G03566,AT5G38920,AT5G42965 NA NA NA NA NA NA NA NA ENOG411EKUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os02g0499800 protein,Os12g0478632 protein,Os08g0317566 protein,Os05g0287400 protein A0A0P0VJE9,A0A0P0YA63,A0A0P0XEJ7,A0A0N7KKG5 A0A0P0VJE9_ORYSJ,A0A0P0YA63_ORYSJ,A0A0P0XEJ7_ORYSJ,A0A0N7KKG5_ORYSJ Os02g0499800 OSNPB_020499800,Os12g0478632 OSNPB_120478632,Os08g0317566 OSNPB_080317566,Os05g0287400 OSNPB_050287400 ENOG411EKUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EKUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os10g0565850 protein,Os12g0428401 protein,Os05g0311201 protein A0A0P0XXU5,A0A0N7KTY7,A0A0P0WKP5 A0A0P0XXU5_ORYSJ,A0A0N7KTY7_ORYSJ,A0A0P0WKP5_ORYSJ Os10g0565850 OSNPB_100565850,Os12g0428401 OSNPB_120428401,Os05g0311201 OSNPB_050311201 ENOG411EKUU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EKUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os11g0672600 protein (Retrotransposon protein, putative, unclassified, expressed),Os12g0587133 protein,Os01g0158850 protein,Os02g0616600 protein,Os05g0430600 protein Q2QZT5,A0A0P0YBT6,A0A0P0UYZ2,A0A0P0VLU7,A0A0P0WMV1 Q2QZT5_ORYSJ,A0A0P0YBT6_ORYSJ,A0A0P0UYZ2_ORYSJ,A0A0P0VLU7_ORYSJ,A0A0P0WMV1_ORYSJ Os11g0672600 LOC_Os11g44900 OSNPB_110672600,Os12g0587133 OSNPB_120587133,Os01g0158850 OSNPB_010158850,Os02g0616600 OSNPB_020616600,Os05g0430600 OSNPB_050430600 ENOG411EKUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os09g0545250 protein (Fragment),Os11g0189350 protein,Os10g0191000 protein (Fragment),Os05g0434101 protein,Os12g0407750 protein (Fragment),Os10g0362600 protein A0A0N7KR76,A0A0P0XZT8,A0A0P0XT30,A0A0P0WMP3,A0A0P0Y9F4,A0A0P0XTA0 A0A0N7KR76_ORYSJ,A0A0P0XZT8_ORYSJ,A0A0P0XT30_ORYSJ,A0A0P0WMP3_ORYSJ,A0A0P0Y9F4_ORYSJ,A0A0P0XTA0_ORYSJ Os09g0545250 OSNPB_090545250,Os11g0189350 OSNPB_110189350,Os10g0191000 OSNPB_100191000,Os05g0434101 OSNPB_050434101,Os12g0407750 OSNPB_120407750,Os10g0362600 OSNPB_100362600 ENOG411DYZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1644) Os02g0566500 protein (cDNA clone:J023040F07, full insert sequence) (cDNA clone:J023091H20, full insert sequence) Q6YTI9 Q6YTI9_ORYSJ Os02g0566500 OsJ_07187 OSNPB_020566500 P0020C11.43 P0020D05.10 ENOG411DYZB EREL1,EREX,EREL2 F4JTJ2,Q9LSB9,Q8S8D3,A0A1P8B1Z5,A0A1P8B1Z4,A0A1P8B237 EREL1_ARATH,EREX_ARATH,EREL2_ARATH,A0A1P8B1Z5_ARATH,A0A1P8B1Z4_ARATH,A0A1P8B237_ARATH PX domain-containing protein EREL1 (Protein EREX-like 1),PX domain-containing protein EREX (Protein ENDOSOMAL RAB EFFECTOR WITH PX-DOMAIN),PX domain-containing protein EREL2 (Protein EREX-like 2),Phox (PX) domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants erex and erel1 exhibit severe growth retardation at a juvenile stage. {ECO:0000269|PubMed:27288222}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:27288222}. FUNCTION: Acts as an effector of RABF2A and RABF2B (By similarity). Involved in vacuolar transport of storage proteins. Regulates membrane trafficking to protein storage vacuoles (PSVs) (PubMed:27288222). Binds specifically to phosphatidylinositol 3-monophosphate (PtdIns3P) (By similarity). {ECO:0000250|UniProtKB:Q9LSB9, ECO:0000269|PubMed:27288222}.,FUNCTION: Acts as an effector of RABF2A and RABF2B. Involved in vacuolar transport of storage proteins. Regulates membrane trafficking to protein storage vacuoles (PSVs). Binds specifically to phosphatidylinositol 3-monophosphate (PtdIns3P). {ECO:0000269|PubMed:27288222}.,FUNCTION: Acts as an effector of RABF2A and RABF2B (By similarity). Involved in vacuolar transport of storage proteins. Regulates membrane trafficking to protein storage vacuoles (PSVs) (Probable). Binds specifically to phosphatidylinositol 3-monophosphate (PtdIns3P) (By similarity). {ECO:0000250|UniProtKB:Q9LSB9, ECO:0000305|PubMed:27288222}. 81811,85631,72823,64974,75696,55166 PX domain-containing protein EREL1 (Protein EREX-like 1),PX domain-containing protein EREX (Protein ENDOSOMAL RAB EFFECTOR WITH PX-DOMAIN),PX domain-containing protein EREL2 (Protein EREX-like 2),Phox (PX) domain-containing protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; endosome membrane [GO:0010008]; phosphatidylinositol binding [GO:0035091]; protein transport [GO:0015031],phosphatidylinositol binding [GO:0035091] locus:2116687;,locus:2093915;,locus:2040030; AT4G32160,AT3G15920,AT2G25350 domain-containing protein Os06g0643000 protein (Phox (PX) domain-containing protein-like) Q67WV5 Q67WV5_ORYSJ Os06g0643000 Os06g0643000 OsJ_22126 OSNPB_060643000 P0416A11.23 ENOG411EKGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRAF-type zinc finger NA NA NA NA NA NA NA ENOG411EKGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase transcription factor Myb/SANT-like NA NA NA NA NA NA NA ENOG411EKGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADF NA NA NA NA NA NA NA ENOG411EKGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyt-b5 Cytochrome b5-like (Os08g0386300 protein),Os09g0334600 protein (Fragment) Q6ZA21,A0A0P0XKT8 Q6ZA21_ORYSJ,A0A0P0XKT8_ORYSJ Os08g0386300 Os08g0386300 OsJ_27158 OSNPB_080386300 P0434E03.7,Os09g0334600 OSNPB_090334600 ENOG411EKGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0863400 protein Q94CV7 Q94CV7_ORYSJ Os01g0863400 OsJ_04167 OSNPB_010863400 P0423B08.21 ENOG411EKGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein (DUF2358) NA NA NA NA NA NA NA ENOG411EKG1 APS2 F4I8U2,A0A1P8ATP5 APS2L_ARATH,A0A1P8ATP5_ARATH Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (ADP-Glc pyrophosphorylase small subunit-like) (ADP-glucose pyrophosphorylase small subunit 2) (ApS2),ADP-glucose pyrophosphorylase small subunit 2 53335,54119 Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (ADP-Glc pyrophosphorylase small subunit-like) (ADP-glucose pyrophosphorylase small subunit 2) (ApS2),ADP-glucose pyrophosphorylase small subunit 2 chloroplast [GO:0009507]; ATP binding [GO:0005524]; glucose-1-phosphate adenylyltransferase activity [GO:0008878]; glycogen biosynthetic process [GO:0005978],glucose-1-phosphate adenylyltransferase activity [GO:0008878]; glycogen biosynthetic process [GO:0005978] DEVELOPMENTAL STAGE: In leaves, mainly observed in starch-producing tissues including the mesophyll and the vascular companions cells. In flowers, detected in the stamens and pistil, as well as in the receptacle. Also expressed in the embryo. {ECO:0000269|PubMed:15598655}. TISSUE SPECIFICITY: Expressed at very low levels in leaves, inflorescences, fruits, and roots. {ECO:0000269|PubMed:15347792, ECO:0000269|PubMed:15598655}. locus:2032003; AT1G05610 Glucose-1-phosphate adenylyltransferase NA NA NA NA NA NA NA ENOG411EKG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0237800 protein (Fragment) A0A0P0WUV0 A0A0P0WUV0_ORYSJ Os06g0237800 OSNPB_060237800 ENOG411DYZ2 Q8GYI7 Q8GYI7_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g19630) (Uncharacterized protein At5g19630/T29J13_50) 24490 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g19630) (Uncharacterized protein At5g19630/T29J13_50) hydrolase activity [GO:0016787] locus:2183179; AT5G19630 X-Pro dipeptidyl-peptidase (S15 family) Os02g0717100 protein (cDNA clone:001-120-F08, full insert sequence) Q6ZGV2 Q6ZGV2_ORYSJ Os02g0717100 Os02g0717100 OJ1191_G08.37 OJ2056_H01.9 OsJ_08149 OSNPB_020717100 ENOG411E8P9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8P8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E8P7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8P6 MPO12.160 F4KHD5 F4KHD5_ARATH A-kinase anchor-like protein 323006 A-kinase anchor-like protein chloroplast [GO:0009507]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; kinase activity [GO:0016301]; lytic vacuole organization [GO:0080171] locus:2170588; AT5G40450 Inherit from KOG: Leo1 Paf1 RNA polymerase II complex component homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411E8P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0558900 protein A0A0P0X7S5 A0A0P0X7S5_ORYSJ Os07g0558900 OSNPB_070558900 ENOG411E8P4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1826) NA NA NA NA NA NA NA ENOG411E8P3 MLF18.14 Q9FIV5 Q9FIV5_ARATH Uncharacterized protein 15698 Uncharacterized protein locus:2167474; AT5G36960 NA NA NA NA NA NA NA NA ENOG411E8P2 Q5BPR6 Q5BPR6_ARATH Uncharacterized protein 13646 Uncharacterized protein locus:2058167; AT2G43390 NA NA NA NA NA NA NA NA ENOG411E8P1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: conserved protein NA NA NA NA NA NA NA ENOG411E8P0 Q8GX70 Q8GX70_ARATH At3g29034 (Transmembrane protein) 9643 At3g29034 (Transmembrane protein) integral component of membrane [GO:0016021] locus:1005716546; AT3G29034 NA Os04g0460350 protein A0A0P0WB05 A0A0P0WB05_ORYSJ Os04g0460350 OSNPB_040460350 ENOG411E8PZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHCH domain NA NA NA NA NA NA NA ENOG411E8PY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAH domain Os09g0408300 protein (Fragment),Os10g0404000 protein A0A0P0XM22,A0A0P0XTY1 A0A0P0XM22_ORYSJ,A0A0P0XTY1_ORYSJ Os09g0408300 OSNPB_090408300,Os10g0404000 OSNPB_100404000 ENOG411E8PU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger NA NA NA NA NA NA NA ENOG411E8PT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PS F4JT86,F4JT85 F4JT86_ARATH,F4JT85_ARATH Zinc ion binding / transcription regulator 26025,24459 Zinc ion binding / transcription regulator locus:2122930; AT4G19550 Zinc ion binding NA NA NA NA NA NA NA ENOG411E8PR Q1PE71 Q1PE71_ARATH Uncharacterized protein 19166 Uncharacterized protein locus:504955222; AT4G18335 NA NA NA NA NA NA NA NA ENOG411E8PQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3067) NA NA NA NA NA NA NA ENOG411E8PM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PK Q9LF65 Q9LF65_ARATH Putative membrane lipoprotein (Uncharacterized protein K10A8_70) 21402 Putative membrane lipoprotein (Uncharacterized protein K10A8_70) integral component of membrane [GO:0016021] locus:2151416; AT5G17590 NA NA NA NA NA NA NA NA ENOG411E8PJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: BCL2 adenovirus E1B 19kDa interacting protein 2 NA NA NA NA NA NA NA ENOG411E8PI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0562000 protein A0A0P0XQ94 A0A0P0XQ94_ORYSJ Os09g0562000 OSNPB_090562000 ENOG411E8PH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0200801 protein A0A0P0X3F6 A0A0P0X3F6_ORYSJ Os07g0200801 OSNPB_070200801 ENOG411E8PG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0003B01.3 protein (OSJNBb0034I13.23 protein) (Os04g0638600 protein) Q7X7F9 Q7X7F9_ORYSJ Os04g0638600 OsJ_16337 OSJNBb0003B01.3 OSJNBb0034I13.23 OSNPB_040638600 ENOG411E8PF MKD10.11 Q9FKQ9,F4J6N7 Q9FKQ9_ARATH,F4J6N7_ARATH Uncharacterized protein 15396,14900 Uncharacterized protein cytokinin metabolic process [GO:0009690] locus:2166655;,locus:2092645; AT5G38790,AT3G30580 NA NA NA NA NA NA NA NA ENOG411E8PE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411E8PD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8PC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of NA NA NA NA NA NA NA ENOG411E8PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L33 NA NA NA NA NA NA NA ENOG411E8PA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3NR RPL23AA,RPL23AB Q8LD46,Q9M3C3,A8MS83 R23A1_ARATH,R23A2_ARATH,A8MS83_ARATH 60S ribosomal protein L23a-1 (AtRPL23A-1),60S ribosomal protein L23a-2,Ribosomal protein L23AB WT phenotype. RT-PCR confirmed that RPL23aA and RPL23aB transcript levels are similar between WT and homozygotes.,In homozygotes no RPL23aB transcript is detected by RT-PCR. Presumed knockout. Homozygotes have WT phenotype wrt rate of development morphology flowering or fecundity. Venation patterns in laves also same as WT. FUNCTION: Binds to a specific region on the 26S rRNA. {ECO:0000250, ECO:0000269|PubMed:11575722}.,FUNCTION: Binds to a specific region on the 26S rRNA. {ECO:0000250}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 17441,17396,16744 60S ribosomal protein L23a-1 (AtRPL23A-1),60S ribosomal protein L23a-2,Ribosomal protein L23AB cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to oxidative stress [GO:0006979]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to oxidative stress [GO:0006979]; ribosomal large subunit assembly [GO:0000027]; ribosome assembly [GO:0042255]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2039712;,locus:2100611; AT2G39460,AT3G55280 ribosomal protein Os01g0348700 protein (Putative 60S ribosomal protein L23A),Os04g0501000 protein Q94CM9,Q0JBZ7 Q94CM9_ORYSJ,Q0JBZ7_ORYSJ Os01g0348700 Os01g0348700 B1051E10.13 OsJ_01678 OSNPB_010348700 P0440D10.34,Os04g0501000 Os04g0501000 OSNPB_040501000 ENOG411E3NS P93319,P92536,P92535,A0A1P8B2M8,Q3EC50 M670_ARATH,M1020_ARATH,M1010_ARATH,A0A1P8B2M8_ARATH,Q3EC50_ARATH Uncharacterized mitochondrial protein AtMg00670 (ORF275),Uncharacterized mitochondrial protein AtMg01020 (ORF153b),Uncharacterized mitochondrial protein AtMg01010 (ORF118),Transmembrane protein MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07674) is demonstrated. 30211,16327,13169,34848,26673 Uncharacterized mitochondrial protein AtMg00670 (ORF275),Uncharacterized mitochondrial protein AtMg01020 (ORF153b),Uncharacterized mitochondrial protein AtMg01010 (ORF118),Transmembrane protein integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966],mitochondrion [GO:0005739],integral component of membrane [GO:0016021] locus:504954550;,locus:504954585;,locus:504954584;,locus:2828008; ATMG00670,ATMG01020,ATMG01010,AT2G07674 NADH dehydrogenase (quinone) activity Orf288 protein Q8HCQ2 Q8HCQ2_ORYSJ orf288 ENOG411E3NQ H2AV,HTA4 Q9C944,Q9T0H7,Q9SII0,O23628,F4JT33 H2AV3_ARATH,H2A8_ARATH,H2AV2_ARATH,H2AV1_ARATH,F4JT33_ARATH Probable histone H2A variant 3 (H2A.F/Z 3) (HTA9),Histone H2A.8 (H2A-4) (HTA4),Probable histone H2A variant 2 (H2A.F/Z 2) (HTA8),Histone H2A variant 1 (H2A.F/Z 1) (H2AvAt) (HTA11),Histone H2A FUNCTION: Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity). {ECO:0000250}.,FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.,FUNCTION: Variant histone H2A which may replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity). {ECO:0000250}. 14272,13200,14370,14541,13794 Probable histone H2A variant 3 (H2A.F/Z 3) (HTA9),Histone H2A.8 (H2A-4) (HTA4),Probable histone H2A variant 2 (H2A.F/Z 2) (HTA8),Histone H2A variant 1 (H2A.F/Z 1) (H2AvAt) (HTA11),Histone H2A nuclear chromatin [GO:0000790]; nucleosome [GO:0000786]; vacuole [GO:0005773]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342]; defense response to bacterium [GO:0042742]; response to temperature stimulus [GO:0009266],nuclear chromatin [GO:0000790]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342],nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342]; regulation of DNA methylation [GO:0044030]; regulation of gene expression [GO:0010468],nuclear chromatin [GO:0000790]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342]; defense response to bacterium [GO:0042742]; detection of temperature stimulus [GO:0016048]; flower development [GO:0009908]; negative regulation of transcription, DNA-templated [GO:0045892]; response to osmotic stress [GO:0006970],nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982] TISSUE SPECIFICITY: Not detected by RT-PCR, but promoter weakly active at the margins of leaves and in the root apical and elongation zones. {ECO:0000269|PubMed:16751347}.,TISSUE SPECIFICITY: Expressed mainly in meristems and dividing cells. In roots, restricted to the vasculature in the maturation zone. {ECO:0000269|PubMed:16751347}. locus:2011456;,locus:2040384;,locus:2096951;,locus:2140852; AT1G52740,AT4G13570,AT2G38810,AT3G54560 histone h2a Probable histone H2A variant 2,Probable histone H2A variant 1,Probable histone H2A variant 3 Q8S857,Q8H7Y8,Q84MP7 H2AV2_ORYSJ,H2AV1_ORYSJ,H2AV3_ORYSJ Os10g0418000 LOC_Os10g28230 OsJ_31536 OSJNBa0061K21.20,Os03g0162200 LOC_Os03g06670 OJ1607A12.10 OsJ_09510,Os03g0743400 LOC_Os03g53190 OJ1365_D05.1 OsJ_12526 OSJNBb0036F07.3 FUNCTION: Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity). {ECO:0000250}. ENOG411E3NV PCR8 Q9M815,A0A1P8ASJ0 PCR8_ARATH,A0A1P8ASJ0_ARATH Protein PLANT CADMIUM RESISTANCE 8 (AtPCR8),PLAC8 family protein FUNCTION: May be involved in heavy metals transport. {ECO:0000250}. 21179,20946 Protein PLANT CADMIUM RESISTANCE 8 (AtPCR8),PLAC8 family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; response to oxidative stress [GO:0006979],integral component of membrane [GO:0016021] locus:2037458; AT1G52200 Protein PLANT CADMIUM RESISTANCE NA NA NA NA NA NA NA ENOG411E3NT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-glutamylcyclotransferase Expressed protein (Os03g0854000 protein) (cDNA clone:006-304-F09, full insert sequence) Q84T74 Q84T74_ORYSJ Os03g0854000 LOC_Os03g63700 Os03g0854000 Os03g63700 OsJ_13414 OSNPB_030854000 ENOG411E3NU Q94BY2,F4IBL0,F4IBK9 Q94BY2_ARATH,F4IBL0_ARATH,F4IBK9_ARATH At1g65820/F1E22_4 (Glutathione-s-transferase, putative) (MAPEG-like protein) (Microsomal glutathione s-transferase),Microsomal glutathione s-transferase R-ATH-156590;R-ATH-5423646; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 16586,22209,18278 At1g65820/F1E22_4 (Glutathione-s-transferase, putative) (MAPEG-like protein) (Microsomal glutathione s-transferase),Microsomal glutathione s-transferase integral component of membrane [GO:0016021]; transferase activity [GO:0016740],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; nuclear envelope [GO:0005635]; vacuole [GO:0005773]; glutathione peroxidase activity [GO:0004602]; glutathione transferase activity [GO:0004364] locus:2018566; AT1G65820 Microsomal glutathione S-transferase MAPEG family protein, expressed (Os03g0709000 protein) (cDNA clone:001-102-E08, full insert sequence) Q10E40 Q10E40_ORYSJ Os03g0709000 LOC_Os03g50130 Os03g0709000 OsJ_12298 OSNPB_030709000 ENOG411E3NY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0775900 protein (Fragment),Os03g0776500 protein A0A0P0W3X0,A0A0N7KI51 A0A0P0W3X0_ORYSJ,A0A0N7KI51_ORYSJ Os03g0775900 OSNPB_030775900,Os03g0776500 OSNPB_030776500 ENOG411E3NB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0298100 protein (cDNA clone:J023109C12, full insert sequence) Q6YSU4 Q6YSU4_ORYSJ Os07g0298100 OSNPB_070298100 P0680C01.22 ENOG411E3NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0330300 protein) (cDNA clone:J033147N02, full insert sequence) Q109V1 Q109V1_ORYSJ Os10g0330300 LOC_Os10g18364 OSNPB_100330300 ENOG411E3NA NUDT17,NUDT18 Q9ZU95,Q9LQU5 NUD17_ARATH,NUD18_ARATH Nudix hydrolase 17, mitochondrial (AtNUDT17) (EC 3.6.1.-),Nudix hydrolase 18, mitochondrial (AtNUDT18) (EC 3.6.1.-) FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}. ARA:AT2G01670-MONOMER;,ARA:AT1G14860-MONOMER; 3.6.1.- 21052,20416 Nudix hydrolase 17, mitochondrial (AtNUDT17) (EC 3.6.1.-),Nudix hydrolase 18, mitochondrial (AtNUDT18) (EC 3.6.1.-) cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}.,TISSUE SPECIFICITY: Expressed in roots, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2065440;,locus:2006817; AT2G01670,AT1G14860 Nudix hydrolase MutT/nudix-like (Os02g0734300 protein) (cDNA clone:006-204-C03, full insert sequence) (cDNA clone:006-306-G07, full insert sequence) Q6Z2I1 Q6Z2I1_ORYSJ Os02g0734300 OsJ_08286 OSNPB_020734300 P0643A10.49 ENOG411E3NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein PRA1 family protein Q6L4R1,B7FAB9 Q6L4R1_ORYSJ,B7FAB9_ORYSJ P0708D12.1 Os05g0200280 OSNPB_050200280,Os01g0196500 Os01g0196500 OsJ_00736 OSNPB_010196500 FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. ENOG411E3NG Q501G9,A0A1P8B8M3 Q501G9_ARATH,A0A1P8B8M3_ARATH At4g33940 (RING/U-box superfamily protein),RING/U-box superfamily protein 30000,22738 At4g33940 (RING/U-box superfamily protein),RING/U-box superfamily protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; response to chitin [GO:0010200],metal ion binding [GO:0046872] locus:2118919; AT4G33940 RING NA NA NA NA NA NA NA ENOG411E3ND Q9M0C8 Q9M0C8_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (PR-1-like protein) 18028 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (PR-1-like protein) extracellular region [GO:0005576] locus:2118771; AT4G30320 Pathogenesis-related protein Os02g0786500 protein (Putative Pathogenesis-related protein PR-1) (cDNA clone:002-129-A12, full insert sequence) Q6K4Q5 Q6K4Q5_ORYSJ Os02g0786500 Os02g0786500 OJ1316_E06.15 OSJNBa0054K20.1 OSNPB_020786500 ENOG411E3NJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os09g0376300 protein (cDNA clone:002-188-B03, full insert sequence) Q6H4S2 Q6H4S2_ORYSJ Os09g0376300 OSJNBa0041C07.4 OSNPB_090376300 P0711A01.18 ENOG411E3NH ndhC P56751 NU3C_ARATH NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 3) (NADH-plastoquinone oxidoreductase subunit 3) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01394}. ARA:ATCG00440-MONOMER; 1.6.5.- 13839 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 3) (NADH-plastoquinone oxidoreductase subunit 3) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NADH dehydrogenase complex [GO:0030964]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; NADH dehydrogenase activity [GO:0003954]; quinone binding [GO:0048038]; photosynthesis [GO:0015979]; transport [GO:0006810] locus:504954667; ATCG00440 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 3) (NADH-plastoquinone oxidoreductase subunit 3) P0C322 NU3C_ORYSJ ndhC Nip059 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01394}. ENOG411E3NN DOF3.7,DAG1 Q43385,A0A178VCA9,B3H6D1 DOF37_ARATH,A0A178VCA9_ARATH,B3H6D1_ARATH Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination 1) (RolB domain B factor a) (Transcription factor BBFa) (AtBBFa),Dof-type zinc finger DNA-binding family protein Reduced seed dormancy; Seeds germinate in darkness; Altered response to red and far-red light-P. Vittorioso-2000 FUNCTION: Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. MISCELLANEOUS: The regulatory role of DOF3.7/DAG1 appears to be opposite to that of DOF2.5/DAG2. Both zinc finger proteins may act on a maternal switch that controls seed germination, possibly by regulating the same gene(s). 32966,34582,36006 Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination 1) (RolB domain B factor a) (Transcription factor BBFa) (AtBBFa),Dof-type zinc finger DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; chromatin binding [GO:0003682]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; negative regulation of transcription, DNA-templated [GO:0045892]; response to red or far red light [GO:0009639] DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. locus:2079492; AT3G61850 dof zinc finger protein NA NA NA NA NA NA NA ENOG411E3NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os11g0542100 protein (cDNA, clone: J065162B12, full insert sequence),Expressed protein (Os11g0543100 protein),Os11g0282600 protein,Os09g0464800 protein B7F8T2,Q2R304,A0A0N7KSS1,A0A0P0XPG6 B7F8T2_ORYSJ,Q2R304_ORYSJ,A0A0N7KSS1_ORYSJ,A0A0P0XPG6_ORYSJ Os11g0542100 OSNPB_110542100,Os11g0543100 LOC_Os11g34080 Os11g0543100 OSNPB_110543100,Os11g0282600 OSNPB_110282600,Os09g0464800 OSNPB_090464800 ENOG411E3N2 Q9XIN6 Q9XIN6_ARATH At2g27290 (Expressed protein) (FAM210B-like protein, putative (DUF1279)) (Uncharacterized protein At2g27290) 21760 At2g27290 (Expressed protein) (FAM210B-like protein, putative (DUF1279)) (Uncharacterized protein At2g27290) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535] locus:2039610; AT2G27290 Protein of unknown function (DUF1279) OJ991214_12.13 protein (Os04g0416000 protein) (cDNA, clone: J065144L23, full insert sequence) Q7XTF4 Q7XTF4_ORYSJ OJ991214_12.13 Os04g0416000 OsJ_14758 OSNPB_040416000 ENOG411E3N3 DPB Q9FNY2,F4KFB3 DPB_ARATH,F4KFB3_ARATH Transcription factor-like protein DPB (DP-like protein B) (AtDPbB) (E2F dimerization partner protein B),5'-AMP-activated protein kinase-like protein FUNCTION: Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.,FUNCTION: Involved in starch granule initiation in leaf chloroplasts. {ECO:0000269|PubMed:28684429}. R-ATH-1538133; 42755,66571 Transcription factor-like protein DPB (DP-like protein B) (AtDPbB) (E2F dimerization partner protein B),5'-AMP-activated protein kinase-like protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; DNA endoreduplication [GO:0042023]; G1/S transition of mitotic cell cycle [GO:0000082]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],kinase activity [GO:0016301] DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. locus:1005716177;,locus:2142669; AT5G03415,AT5G03420 NA NA NA NA NA NA NA NA ENOG411E3N0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YABBY protein NA NA NA NA NA NA NA ENOG411E3N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21 kDa protein-like NA NA NA NA NA NA NA ENOG411E3N6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions Ferredoxin-1, chloroplastic (Anti-disease protein 1) (Ferredoxin I) Q0J8M2 FER1_ORYSJ ADI1 Os08g0104600 LOC_Os08g01380 OJ1300_E01.1 OsJ_024720 FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. ENOG411E3N7 Q8L8Z1,O23413 CSPLO_ARATH,CSPLN_ARATH CASP-like protein 1E1 (AtCASPL1E1),CASP-like protein 1E2 (AtCASPL1E2) 20109,20313 CASP-like protein 1E1 (AtCASPL1E1),CASP-like protein 1E2 (AtCASPL1E2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; iron-sulfur cluster binding [GO:0051536]; protein histidine kinase binding [GO:0043424],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:2130509;,locus:2130494; AT4G15630,AT4G15620 CASP-like protein CASP-like protein 1E1 (OsCASPL1E1) Q9ARX2 CSPL8_ORYSJ Os01g0363300 LOC_Os01g26120 OsJ_01759 P0460H02.47 P0503E05.9 ENOG411E3N4 PRD3 A0A1P8AUL3,A0A1P8AUM4,F4HU48 A0A1P8AUL3_ARATH,A0A1P8AUM4_ARATH,F4HU48_ARATH Putative recombination initiation defects 3 Defective in meiotic double strand break formation. Fewer chiasmata formed per cell compared to the wild type cells. Reduced fertility due to defects in meiosis-M. Grelon-2009 50893,50834,50990 Putative recombination initiation defects 3 chromosome organization involved in meiotic cell cycle [GO:0070192]; plant-type sporogenesis [GO:0048236],chiasma assembly [GO:0051026]; embryo sac development [GO:0009553]; meiotic DNA double-strand break formation [GO:0042138]; plant-type sporogenesis [GO:0048236]; pollen development [GO:0009555] locus:2198200; AT1G01690 NA Protein PAIR1 (Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1) Q75RY2 PAIR1_ORYSJ PAIR1 Os03g0106300 LOC_Os03g01590 OSJNBa0009C08.13 FUNCTION: Involved in spore formation. Plays an essential role in the establishment of homologous chromosome pairing in early meiosis. {ECO:0000269|PubMed:15031413}. ENOG411E3N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60S ribosomal protein NA NA NA NA NA NA NA ENOG411E3N8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DWAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os12g0121600 protein (Sodium/hydrogen exchanger family protein, expressed),Os11g0123600 protein Q2QYF6,A0A0P0XYV8 Q2QYF6_ORYSJ,A0A0P0XYV8_ORYSJ LOC_Os12g02840 Os12g0121600 OsJ_34988 OSNPB_120121600,Os11g0123600 OSNPB_110123600 ENOG411DWAE F4ITP6 F4ITP6_ARATH Ubiquitin-like superfamily protein 27736 Ubiquitin-like superfamily protein locus:2062566; AT2G32350 UBQ NA NA NA NA NA NA NA ENOG411DWAJ DRT111 P42698 DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic (REQUIRED FOR SNC4-1D protein 2) FUNCTION: Seems to be involved in the resistance to UV light and chemical DNA-damaging agents (PubMed:8479917). Regulates the splicing of the receptor-like kinase SNC4/LRKL-2.6 (PubMed:25267732). {ECO:0000269|PubMed:25267732, ECO:0000269|PubMed:8479917}. R-ATH-72163; 42318 DNA-damage-repair/toleration protein DRT111, chloroplastic (REQUIRED FOR SNC4-1D protein 2) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; DNA repair [GO:0006281]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] locus:2028130; AT1G30480 DNA-damage-repair toleration protein DRT111 Os01g0526100 protein (Putative DNA-damage repair protein DRT111) (cDNA, clone: J100058K04, full insert sequence) Q8L460 Q8L460_ORYSJ Os01g0526100 B1074C08.8 B1147B04.17 OSNPB_010526100 ENOG411DWAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411DWAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA magnesium ion transmembrane transporter activity Putative magnesium transporter MRS2-D,Os04g0430900 protein (Fragment) Q7XQQ1,A0A0P0WA96 MRS2D_ORYSJ,A0A0P0WA96_ORYSJ MRS2-D Os04g0430900 LOC_Os04g35160 OsJ_14848 OSJNBa0084A10.4,Os04g0430900 OSNPB_040430900 FUNCTION: Putative magnesium transporter. {ECO:0000250}. ENOG411DWA3 EXL3,EXL2 Q94CH6,Q94CH7,A0A1P8ASQ1 EXL3_ARATH,EXL2_ARATH,A0A1P8ASQ1_ARATH GDSL esterase/lipase EXL3 (EC 3.1.1.-) (Family II extracellular lipase 3) (Family II lipase EXL3),GDSL esterase/lipase EXL2 (EC 3.1.1.-) (Family II extracellular lipase 2) (Family II lipase EXL2),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT1G75900-MONOMER;,ARA:GQT-2126-MONOMER; 3.1.1.- 39816,42127,43991 GDSL esterase/lipase EXL3 (EC 3.1.1.-) (Family II extracellular lipase 3) (Family II lipase EXL3),GDSL esterase/lipase EXL2 (EC 3.1.1.-) (Family II extracellular lipase 2) (Family II lipase EXL2),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042],lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Flower buds. {ECO:0000269|PubMed:11431566}. locus:2204324;,locus:2204395; AT1G75900,AT1G75890 GDSL esterase lipase Os09g0540400 protein (Putative Anter-specific proline-rich protein APG),Os02g0101400 protein (Fragment),GDSL-like Lipase/Acylhydrolase family protein, expressed (Os10g0438600 protein) (cDNA clone:J013034G20, full insert sequence),Os09g0540400 protein (Putative Anter-specific proline-rich protein APG) (cDNA clone:001-015-C10, full insert sequence) Q651E3,Q0E4T6,Q7XE38,Q651E2 Q651E3_ORYSJ,Q0E4T6_ORYSJ,Q7XE38_ORYSJ,Q651E2_ORYSJ B1274F11.19-1 Os09g0540400 OsJ_30175 OSNPB_090540400,Os02g0101400 Os02g0101400 OSNPB_020101400,LOC_Os10g30290 Os10g0438600 OSNPB_100438600,B1274F11.19-2 Os09g0540400 OSNPB_090540400 ENOG411DWA5 HSP70-17 F4JMJ1,A0A1P8B8R9 HSP7R_ARATH,A0A1P8B8R9_ARATH Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17),Heat shock protein 70 (Hsp 70) family protein 96725,99644 Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17),Heat shock protein 70 (Hsp 70) family protein chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; Golgi apparatus [GO:0005794]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524],ATP binding [GO:0005524] locus:2129021; AT4G16660 hypoxia up-regulated protein Os02g0710900 protein (Putative growth regulator) Q6ZFX8 Q6ZFX8_ORYSJ Os02g0710900 OJ1038_A06.19 OJ1311_H06.29 OSNPB_020710900 ENOG411DWA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione gamma-glutamylcysteinyltransferase Os06g0102300 protein,Os05g0415200 protein (Phytochelatin synthase),Os06g0102300 protein (Fragment) Q0DFC5,Q0DI55,A0A0N7KLD4 Q0DFC5_ORYSJ,Q0DI55_ORYSJ,A0A0N7KLD4_ORYSJ Os06g0102300 Os06g0102300 OSNPB_060102300,OsPCS2 Os05g0415200 OSNPB_050415200,Os06g0102300 OSNPB_060102300 ENOG411DZQ5 MNF13.26 Q5PP69,B3H4M9 Q5PP69_ARATH,B3H4M9_ARATH At5g40700 (Transcriptional regulator ATRX-like protein),Transcriptional regulator ATRX-like protein 34060,28974 At5g40700 (Transcriptional regulator ATRX-like protein),Transcriptional regulator ATRX-like protein locus:2168768; AT5G40700 NA Os12g0273700 protein (Fragment) A0A0P0Y904 A0A0P0Y904_ORYSJ Os12g0273700 OSNPB_120273700 ENOG411DZQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Adenylate kinase UMP-CMP kinase 1 (EC 2.7.4.14) (Deoxycytidylate kinase 1) (CK 1) (dCMP kinase 1) (Uridine monophosphate/cytidine monophosphate kinase 1) (UMP/CMP kinase 1) (UMP/CMPK 1) Q5VRN0 KCY1_ORYSJ Os06g0109600 LOC_Os06g02000 OsJ_19856 OSJNBa0004I20.14 P0514G12.38 FUNCTION: Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. {ECO:0000255|HAMAP-Rule:MF_03172}. ENOG411DZQE O48727,F4IUM9,F4J030 O48727_ARATH,F4IUM9_ARATH,F4J030_ARATH Glycosyl hydrolase superfamily protein (Putative beta-1,3-glucanase),Glycosyl hydrolase superfamily protein ARA:AT2G26600-MONOMER; 43239,32619,44170 Glycosyl hydrolase superfamily protein (Putative beta-1,3-glucanase),Glycosyl hydrolase superfamily protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2066215;,locus:2093232; AT2G26600,AT3G15800 hydrolase family 17 protein Os02g0200300 protein,Os02g0200300 protein (Putative beta-1,3-glucanase) (cDNA clone:J013123P07, full insert sequence),Os06g0607000 protein (Fragment) Q0E304,Q6Z7A0,A0A0P0WYH6 Q0E304_ORYSJ,Q6Z7A0_ORYSJ,A0A0P0WYH6_ORYSJ Os02g0200300 Os02g0200300 OSNPB_020200300,Os02g0200300 OSNPB_020200300 P0419A09.8,Os06g0607000 OSNPB_060607000 ENOG411DZXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase/Carboxylesterase Probable inactive carboxylesterase Os04g0669700,Os04g0669700 protein Q7XR62,A0A0P0WG18 CAEH3_ORYSJ,A0A0P0WG18_ORYSJ Os04g0669700 LOC_Os04g57390 OSJNBa0043A12.23,Os04g0669700 OSNPB_040669700 ENOG411DZXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MOZ/SAS family NA NA NA NA NA NA NA ENOG411DZXC Q9SVH3 PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740 Embryo defective; Cotyledon-D. Meinke-2011 82430 Pentatricopeptide repeat-containing protein At4g20740 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2121529; AT4G20740 Pentatricopeptide repeat-containing protein Os07g0179000 protein (Putative fertility restorer) (cDNA clone:001-132-D11, full insert sequence) (cDNA clone:J013136M08, full insert sequence) Q6ZLD6 Q6ZLD6_ORYSJ OJ1361_E02.121 Os07g0179000 OJ1014_E09.3 OsJ_23314 OSNPB_070179000 ENOG411DZXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 54 (OsPP2C54) (EC 3.1.3.16),Probable protein phosphatase 2C 27 (OsPP2C27) (EC 3.1.3.16) Q5SMK6,Q69QZ0 P2C54_ORYSJ,P2C27_ORYSJ Os06g0179700 LOC_Os06g08140 OsJ_20334 OSJNBa0035I03.20 OSJNBb0019L07.2,Os02g0799000 LOC_Os02g55560 OJ1695_D07.18 OsJ_008442 ENOG411DZXG SPK1 Q8SAB7 SPK1_ARATH Guanine nucleotide exchange factor SPIKE 1 DISRUPTION PHENOTYPE: Dwarf in spk1-1 and spk1-5 (PubMed:22683260). Seedling lethal with trichome, cotyledon, and leaf-shape defects due to a misregulation of laterally clustered foci of microtubules and polarized growth in epidermal cells. Sporophytic sterility. Trichomes show a reduced branch number and an irregular swelling along the stalk and branches (PubMed:11826302, PubMed:18308939). Enlarged endoplasmic reticulum (ER) cisternae and constitutively activated ER stress response (PubMed:21109438). Increased lateral root density and retarded gravitropic responses associated with PIN2 internalization. In spk1-4, enhanced cell shape changes induced by ROP6 overexpression, and reduced active ROP6 (GTP-bound) levels (PubMed:22683260). {ECO:0000269|PubMed:11826302, ECO:0000269|PubMed:18308939, ECO:0000269|PubMed:21109438, ECO:0000269|PubMed:22683260}. Seedling lethal-D. Szymanski-2002 FUNCTION: Guanine nucleotide exchange factor (GEF) for Rho and Rac. GEF proteins activate small GTPases by exchanging bound GDP for free GTP. Controls actin polymerization via the two heteromeric complexes WAVE and actin-related protein (ARP) 2/3 (PubMed:18308939). Involved in cytoskeletal reorganization required for cell shape (e.g. trichome and cotyledon) control and tissue development (PubMed:11826302). Promotes polarized growth and cell-cell adhesion in the leaf epidermis probably by promoting the formation of endoplasmic reticulum (ER) exit site (ERES) and/or trafficking between the ER and Golgi (PubMed:21109438). Triggers ARAC3/ROP6 activation required for auxin-mediated inhibition of PIN2 internalization during gravitropic responses (, PubMed:22683260). {ECO:0000269|PubMed:11826302, ECO:0000269|PubMed:18308939, ECO:0000269|PubMed:21109438, ECO:0000269|PubMed:22683260}. 206829 Guanine nucleotide exchange factor SPIKE 1 cytosol [GO:0005829]; endoplasmic reticulum exit site [GO:0070971]; endoplasmic reticulum membrane [GO:0005789]; extrinsic component of membrane [GO:0019898]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; Rho guanyl-nucleotide exchange factor activity [GO:0005089]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; positive gravitropism [GO:0009958]; regulation of actin polymerization or depolymerization [GO:0008064]; regulation of auxin mediated signaling pathway [GO:0010928]; regulation of cell shape [GO:0008360]; regulation of cytoskeleton organization [GO:0051493]; small GTPase mediated signal transduction [GO:0007264]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed ubiquitously, in roots and aerial organs. {ECO:0000269|PubMed:11826302, ECO:0000269|PubMed:22683260}. locus:2130484; AT4G16340 Dedicator of cytokinesis protein Os03g0328000 protein (Fragment) Q0DS76 Q0DS76_ORYSJ Os03g0328000 OSNPB_030328000 ENOG411DZXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (2R)-phospho-3-sulfolactate synthase (ComA) (2R)-phospho-3-sulfolactate synthase-like (Os06g0682900 protein) (Phosphosulfolactate synthase-related protein) Q653W2 Q653W2_ORYSJ PSR Os06g0682900 OsJ_22394 OSNPB_060682900 P0009H10.3 P0547F09.36 ENOG411DZXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os03g0745100 protein (Fragment) Q84M46,A0A0P0W3G2 Q84M46_ORYSJ,A0A0P0W3G2_ORYSJ LOC_Os03g59350 Os03g0808200 OsJ_13046 OSJNBa0059E14.4 OSJNBa0060M17.3 OSNPB_030808200,Os03g0745100 OSNPB_030745100 ENOG411DZXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os12g0594000 protein A0A0P0YBW3 A0A0P0YBW3_ORYSJ Os12g0594000 OSNPB_120594000 ENOG411DZXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os08g0475100 protein (Putative PrMC3) (cDNA clone:001-203-F05, full insert sequence) Q6ZDG5 Q6ZDG5_ORYSJ Os08g0475100 Os08g0475100 OSNPB_080475100 P0451G12.21 ENOG411DZXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os02g0327700 protein (Putative HGA1) (cDNA clone:J023033M07, full insert sequence),Os02g0327700 protein (Fragment) Q6YWE6,A0A0P0VIF4 Q6YWE6_ORYSJ,A0A0P0VIF4_ORYSJ Os02g0327700 OSJNBb0042G06.21 OSNPB_020327700 P0622F08.6,Os02g0327700 OSNPB_020327700 ENOG411DZXQ BBX23,BBX22,LZF1 O82617,Q9SYM2,F4IBS4 BBX23_ARATH,BBX22_ARATH,F4IBS4_ARATH B-box zinc finger protein 23 (Protein DOUBLE B-BOX 4) (Protein SALT TOLERANCE HOMOLOG 6),B-box zinc finger protein 22 (Protein DOUBLE B-BOX 3) (Protein LIGHT-REGULATED ZINC FINGER PROTEIN 1) (Protein SALT TOLERANCE HOMOLOG 3),Light-regulated zinc finger protein 1 DISRUPTION PHENOTYPE: Increased hypocotyl length under short day conditions (PubMed:18796637). Delayed chloroplast development (PubMed:18182030). {ECO:0000269|PubMed:18182030}. FUNCTION: Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.,FUNCTION: Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. 17859,32864,35079 B-box zinc finger protein 23 (Protein DOUBLE B-BOX 4) (Protein SALT TOLERANCE HOMOLOG 6),B-box zinc finger protein 22 (Protein DOUBLE B-BOX 3) (Protein LIGHT-REGULATED ZINC FINGER PROTEIN 1) (Protein SALT TOLERANCE HOMOLOG 3),Light-regulated zinc finger protein 1 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; zinc ion binding [GO:0008270]; photomorphogenesis [GO:0009640]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, transcription factor binding [GO:0000989]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nuclear speck [GO:0016607]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; anthocyanin-containing compound biosynthetic process [GO:0009718]; chlorophyll biosynthetic process [GO:0015995]; chloroplast organization [GO:0009658]; regulation of transcription, DNA-templated [GO:0006355]; shade avoidance [GO:0009641] locus:2122759;,locus:2202930; AT4G10240,AT1G78600 Salt tolerance-like protein Os06g0152200 protein (Zinc finger protein) (Zinc-finger protein R2931) (cDNA clone:001-029-D01, full insert sequence) (cDNA clone:J023001E21, full insert sequence),Os01g0202500 protein (Fragment) O82116,A0A0P0UZC2 O82116_ORYSJ,A0A0P0UZC2_ORYSJ Os06g0152200 OsJ_20154 OSNPB_060152200 P0529C07.33 P0710H01.45,Os01g0202500 OSNPB_010202500 ENOG411DZXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 32 C terminal Beta-fructofuranosidase, insoluble isoenzyme 5 (EC 3.2.1.26) (Cell wall beta-fructosidase 5) (Invertase 5) (OsCIN5) (Sucrose hydrolase 5),Os04g0664900 protein Q56UD1,A0A0N7KJV8 INV5_ORYSJ,A0A0N7KJV8_ORYSJ CIN5 Os04g0664900 LOC_Os04g56930 OSJNBa0087O24.4,Os04g0664900 OSNPB_040664900 FUNCTION: May play a role in stress response. ENOG411DZXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ammonium Transporter Family Ammonium transporter 3 member 3 (OsAMT3;3) Q69T29 AMT33_ORYSJ AMT3-3 Os02g0550800 LOC_Os02g34580 OsJ_07097 P0451A10.33 FUNCTION: Involved in ammonium transport. {ECO:0000250}. ENOG411DZX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os04g0676200 protein (Fragment) Q0J919 Q0J919_ORYSJ Os04g0676200 Os04g0676200 OSNPB_040676200 ENOG411DZX2 CYCU3-1 Q8LB60,Q1G3M7 CCU31_ARATH,Q1G3M7_ARATH Cyclin-U3-1 (CycU3;1) (Cyclin-P1.1) (CycP1;1),Cyclin family protein 25431,24424 Cyclin-U3-1 (CycU3;1) (Cyclin-P1.1) (CycP1;1),Cyclin family protein protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079],protein kinase binding [GO:0019901]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in the shoot apex, leaf primordia and young leaves. {ECO:0000269|PubMed:15197472}. locus:2099192;,locus:1009023243; AT3G63120,AT3G05327 regulation of cyclin-dependent protein serine/threonine kinase activity Cyclin-P3-1 (CycP3;1),Os05g0398000 protein Q75HV0,A0A0N7KKQ8 CCP31_ORYSJ,A0A0N7KKQ8_ORYSJ CYCP3-1 Os05g0398000 LOC_Os05g33040 OsJ_017705 OSJNBb0092G21.15 P0605G01.5,Os05g0398000 OSNPB_050398000 ENOG411DZX3 Q9ZW75 PMTJ_ARATH Probable methyltransferase PMT19 (EC 2.1.1.-) 2.1.1.- 70236 Probable methyltransferase PMT19 (EC 2.1.1.-) cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2041031; AT2G43200 Pfam:DUF248 NA NA NA NA NA NA NA ENOG411DZX0 AT1G52630.1 Q8RY81,F4IEI9 Q8RY81_ARATH,F4IEI9_ARATH O-fucosyltransferase family protein (Uncharacterized protein At1g52630),O-fucosyltransferase family protein 49547,39730 O-fucosyltransferase family protein (Uncharacterized protein At1g52630),O-fucosyltransferase family protein cytoplasm [GO:0005737]; transferase activity, transferring glycosyl groups [GO:0016757],transferase activity, transferring glycosyl groups [GO:0016757] locus:2035084; AT1G52630 domain-containing protein AP2 domain-containing protein AP29-like (Os08g0537900 protein) Q6ZD37 Q6ZD37_ORYSJ P0665C04.30 Os08g0537900 OSNPB_080537900 ENOG411DZX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0225100 protein,Os11g0226700 protein (Fragment) A0A0P0Y0F1,A0A0P0Y0C2 A0A0P0Y0F1_ORYSJ,A0A0P0Y0C2_ORYSJ Os11g0225100 OSNPB_110225100,Os11g0226700 OSNPB_110226700 ENOG411DZX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0215000 protein (Fragment) Q0JPM1 Q0JPM1_ORYSJ Os01g0215000 Os01g0215000 OSNPB_010215000 ENOG411EJU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EJU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent protease La (LON) domain NA NA NA NA NA NA NA ENOG411EJU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411EJU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Harpin-induced protein 1 containing protein, expressed (Os11g0157300 protein) (cDNA clone:J023077C16, full insert sequence) Q2RAC3 Q2RAC3_ORYSJ LOC_Os11g05870 Os11g0157300 OSNPB_110157300 ENOG411EJU9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7C3 Q9LZQ0,Q9FLK2,O22912 CX5C2_ARATH,CX5C3_ARATH,CX5C1_ARATH Cytochrome c oxidase subunit 5C-2 (Cytochrome c oxidase polypeptide Vc-2),Probable cytochrome c oxidase subunit 5C-3 (Cytochrome c oxidase polypeptide Vc-3),Probable cytochrome c oxidase subunit 5C-1 (Cytochrome c oxidase polypeptide Vc-1) FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. {ECO:0000250}. ARA:AT2G47380-MONOMER;MetaCyc:AT2G47380-MONOMER; 7052,7092,7070 Cytochrome c oxidase subunit 5C-2 (Cytochrome c oxidase polypeptide Vc-2),Probable cytochrome c oxidase subunit 5C-3 (Cytochrome c oxidase polypeptide Vc-3),Probable cytochrome c oxidase subunit 5C-1 (Cytochrome c oxidase polypeptide Vc-1) integral component of membrane [GO:0016021]; mitochondrial respiratory chain [GO:0005746],integral component of membrane [GO:0016021]; mitochondrial respiratory chain [GO:0005746]; mitochondrion [GO:0005739] locus:2163213;,locus:2065185; AT3G62400,AT5G61310,AT2G47380 Cytochrome c oxidase subunit Cytochrome c oxidase subunit 5C (Cytochrome c oxidase polypeptide Vc) Q9SXX7 COX5C_ORYSJ COX5C Os12g0561000 LOC_Os12g37419 OsJ_36508 FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. {ECO:0000250}. ENOG411DUQ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 Os05g0427100 protein (Unknow protein) Q75HQ9 Q75HQ9_ORYSJ Os05g0427100 Os05g0427100 OSJNBa0044P19.14 OSNPB_050427100 P0636F09.8 ENOG411DUQ2 MXI22.5 F4K8X8,Q0WVW9 F4K8X8_ARATH,Q0WVW9_ARATH DNA repair protein RadA-like protein,DNA repair protein RadA-like protein (DNA repair protein-like) 67646,63090 DNA repair protein RadA-like protein,DNA repair protein RadA-like protein (DNA repair protein-like) ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA-dependent ATPase activity [GO:0008094]; DNA repair [GO:0006281] locus:2177497; AT5G50340 DNA repair protein Os06g0151600 protein (Putative RadA) (RadA-like protein) (cDNA clone:J033111L21, full insert sequence),Os06g0151600 protein Q76B91,A0A0N7KLJ5 Q76B91_ORYSJ,A0A0N7KLJ5_ORYSJ OsRadA P0529C07.24-1 P0710H01.36-1 Os06g0151600 OSNPB_060151600,Os06g0151600 OSNPB_060151600 ENOG411DUQ3 VPS32.2,VPS32.1 Q9SZE4,O82197 VP322_ARATH,VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 2 (AtVPS32-2) (Charged multivesicular body protein 4 homolog 2) (ESCRT-III complex subunit VPS32 homolog 2),Vacuolar protein sorting-associated protein 32 homolog 1 (AtVPS32-1) (Charged multivesicular body protein 4 homolog 1) (ESCRT-III complex subunit VPS32 homolog 1) FUNCTION: Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo (By similarity). {ECO:0000250}. R-ATH-1632852;R-ATH-917729; 24333,24014 Vacuolar protein sorting-associated protein 32 homolog 2 (AtVPS32-2) (Charged multivesicular body protein 4 homolog 2) (ESCRT-III complex subunit VPS32 homolog 2),Vacuolar protein sorting-associated protein 32 homolog 1 (AtVPS32-1) (Charged multivesicular body protein 4 homolog 1) (ESCRT-III complex subunit VPS32 homolog 1) ESCRT III complex [GO:0000815]; intralumenal vesicle formation [GO:0070676]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],ESCRT III complex [GO:0000815]; plasma membrane [GO:0005886]; protein transport [GO:0015031]; vacuolar transport [GO:0007034] locus:2119956;,locus:2051970; AT4G29160,AT2G19830 Vacuolar protein sorting-associated protein 32 homolog Os06g0608500 protein (SNF7 protein-like) (cDNA clone:006-307-G05, full insert sequence) (cDNA clone:J023056L17, full insert sequence),Os09g0267600 protein,Os09g0267600 protein (Fragment) Q69V59,A0A0P0XJ91,A0A0N7KQG4 Q69V59_ORYSJ,A0A0P0XJ91_ORYSJ,A0A0N7KQG4_ORYSJ Os06g0608500 Os06g0608500 OsJ_21933 OSNPB_060608500 P0556B08.16,Os09g0267600 OSNPB_090267600 ENOG411DUQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-D-xylosidase Os01g0296700 protein (Fragment) Q0JNF8 Q0JNF8_ORYSJ Os01g0296700 Os01g0296700 OSNPB_010296700 ENOG411DUQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance protein RPM1 NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (Os11g0229400 protein) (cDNA, clone: J065090F12, full insert sequence),NBS-LRR disease resistance protein, putative, expressed (Os11g0227200 protein),NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (Os11g0229500 protein) (RPR1),Os11g0229300 protein,Os04g0219550 protein,Os11g0228800 protein,Os11g0229700 protein (Fragment) Q53Q39,Q2R8J2,Q9ZQT3,A0A0P0Y0B8,A0A0P0W8D1,A0A0P0Y1B9,A0A0P0Y0H2 Q53Q39_ORYSJ,Q2R8J2_ORYSJ,Q9ZQT3_ORYSJ,A0A0P0Y0B8_ORYSJ,A0A0P0W8D1_ORYSJ,A0A0P0Y1B9_ORYSJ,A0A0P0Y0H2_ORYSJ LOC_Os11g12330 Os11g0229400 OsJ_33439 OSNPB_110229400,LOC_Os11g12000 Os11g0227200 OsJ_33435 OSNPB_110227200,RPR1 LOC_Os11g12340 Os11g0229500 OsJ_33440 OSNPB_110229500,Os11g0229300 OSNPB_110229300,Os04g0219550 OSNPB_040219550,Os11g0228800 OSNPB_110228800,Os11g0229700 OSNPB_110229700 ENOG411DUQA C0LGJ1 Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 (EC 2.7.11.1) 2.7.11.1 121895 Probable LRR receptor-like serine/threonine-protein kinase At1g74360 (EC 2.7.11.1) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2019255; AT1G74360 LRR receptor-like serine threonine-protein kinase Os07g0597200 protein,Os01g0677450 protein Q0D4Y3,A0A0P0V6H3 Q0D4Y3_ORYSJ,A0A0P0V6H3_ORYSJ Os07g0597200 Os07g0597200 OsJ_24989 OSNPB_070597200,Os01g0677450 OSNPB_010677450 ENOG411DUQN PRR1,PRR2 Q9FVQ6,Q9SVP6 PILR1_ARATH,PILR2_ARATH Pinoresinol reductase 1 (AtPrR1) ((+)-pinoresinol reductase) (EC 1.23.1.1) ((-)-pinoresinol reductase) (EC 1.23.1.3) (Pinoresinol-lariciresinol reductase 1) (AtPLR1),Pinoresinol reductase 2 (AtPrR2) ((-)-pinoresinol reductase) (EC 1.23.1.3) (Pinoresinol-lariciresinol reductase 2) (AtPLR2) DISRUPTION PHENOTYPE: No significant difference in lariciresinol content. Prr1 and prr2 double mutants show a complete inhibition of lariciresinol biosynthesis. {ECO:0000269|PubMed:18347017}. FUNCTION: Reductase involved in lignan biosynthesis. Unlike conventional pinoresinol reductases that can reduce both pinoresinol and lariciresinol, PRR1 shows a strict substrate preference toward pinoresinol. Active on both (+) and (-)-pinoresinol. Abstracts the 4R-hydride from the NADPH cofactor during catalysis. {ECO:0000269|PubMed:18347017}.,FUNCTION: Reductase involved in lignan biosynthesis. Unlike conventional pinoresinol reductases that can reduce both pinoresinol and lariciresinol, PRR2 shows a strict substrate selectivity for (-)-pinoresinol. No activity with (+)-pinoresinol or lariciresinol. Abstracts the 4R-hydride from the NADPH cofactor during catalysis. {ECO:0000269|PubMed:18347017}. ARA:AT1G32100-MONOMER;,ARA:AT4G13660-MONOMER; 1.23.1.1;1.23.1.3;,1.23.1.3; 1.23.1.1; 1.23.1.3,1.23.1.3 35549,35415 Pinoresinol reductase 1 (AtPrR1) ((+)-pinoresinol reductase) (EC 1.23.1.1) ((-)-pinoresinol reductase) (EC 1.23.1.3) (Pinoresinol-lariciresinol reductase 1) (AtPLR1),Pinoresinol reductase 2 (AtPrR2) ((-)-pinoresinol reductase) (EC 1.23.1.3) (Pinoresinol-lariciresinol reductase 2) (AtPLR2) pinoresinol reductase activity [GO:0010283]; lignan biosynthetic process [GO:0009807],plasmodesma [GO:0009506]; pinoresinol reductase activity [GO:0010283]; lignan biosynthetic process [GO:0009807] TISSUE SPECIFICITY: Expressed in roots and stems. {ECO:0000269|PubMed:18347017}.,TISSUE SPECIFICITY: Expressed in roots. Detected in stems. {ECO:0000269|PubMed:18347017}. locus:2031730;,locus:2119455; AT1G32100,AT4G13660 Isoflavone reductase Isoflavone reductase, putative, expressed (Os12g0263800 protein) (cDNA clone:J013045C05, full insert sequence),Isoflavone reductase, putative, expressed (Os12g0263200 protein) (cDNA, clone: J065219F05, full insert sequence),Isoflavone reductase, putative, expressed (Os12g0265100 protein),Os12g0265100 protein (Fragment),Os12g0263600 protein,Os12g0263800 protein (Fragment) Q2QUH0,Q2QUH7,Q2QUF6,A0A0P0Y8T7,A0A0P0Y8U4,A0A0P0Y8Q2 Q2QUH0_ORYSJ,Q2QUH7_ORYSJ,Q2QUF6_ORYSJ,A0A0P0Y8T7_ORYSJ,A0A0P0Y8U4_ORYSJ,A0A0P0Y8Q2_ORYSJ Os12g0263800 LOC_Os12g16290 OSNPB_120263800,Os12g0263200 LOC_Os12g16220 OSNPB_120263200,LOC_Os12g16410 Os12g0265100 OsJ_24881 OSNPB_120265100,Os12g0265100 OSNPB_120265100,Os12g0263600 OSNPB_120263600,Os12g0263800 OSNPB_120263800 ENOG411DUQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAS fold Os12g0562600 protein (Fragment),Os11g0678000 protein Q0IML6,A0A0P0Y5C3 Q0IML6_ORYSJ,A0A0P0Y5C3_ORYSJ Os12g0562600 Os12g0562600 OSNPB_120562600,Os11g0678000 OSNPB_110678000 ENOG411DUQK PCMP-E21 Q3ECB8,F4I5L3 PP128_ARATH,F4I5L3_ARATH Pentatricopeptide repeat-containing protein At1g77170, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein 52657,9019 Pentatricopeptide repeat-containing protein At1g77170, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2195980;,locus:2195940; AT1G77170,AT1G77150 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DUQI TIF3F1 O04202 EIF3F_ARATH Eukaryotic translation initiation factor 3 subunit F (eIF3f) (eIF-3-epsilon) (eIF3 p32 subunit) DISRUPTION PHENOTYPE: Male gametophyte-defective. Disrupted pollen germination and embryo development. Hypersensitivity to exogenous sucrose. {ECO:0000269|PubMed:20444226}. Male gametophyte defective; Rare embryo defective-D. Ye-2010 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (Potential). Involved in cell growth and differentiation, especially during embryogenesis and male gametophyte germination (PubMed:20444226). Regulates sensitivity to sugars (e.g. sucrose) (PubMed:20444226). {ECO:0000255|HAMAP-Rule:MF_03005, ECO:0000269|PubMed:20444226}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 31862 Eukaryotic translation initiation factor 3 subunit F (eIF3f) (eIF-3-epsilon) (eIF3 p32 subunit) cytoplasm [GO:0005737]; cytosol [GO:0005829]; eukaryotic translation initiation factor 3 complex, eIF3m [GO:0071541]; membrane [GO:0016020]; nucleus [GO:0005634]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369]; embryo development ending in seed dormancy [GO:0009793]; pollen germination [GO:0009846]; response to sucrose [GO:0009744]; translational initiation [GO:0006413] TISSUE SPECIFICITY: Expressed in inflorescences, leaves, stems, siliques, roots and seedlings. Accumulates at highly levels in pollen grains, developing embryos and root tips. {ECO:0000269|PubMed:20444226}. locus:2061206; AT2G39990 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit F (eIF3f) (eIF-3-epsilon) Q75M19 Q75M19_ORYSJ Os05g0104800 OsJ_16805 OSJNBb0035J08.2 OSNPB_050104800 P0668H12.17 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03005}. ENOG411DUQV F9E10.12 Q1PFD2,Q9C9P9,Q9SK51 Q1PFD2_ARATH,Q9C9P9_ARATH,Q9SK51_ARATH Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein/pathogenesis-like protein),At1g75030 (Thaumatin-like protein) (Thaumatin-like protein 3) (Thaumatin-like protein; 28949-28112),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin-like pathogenesis-related protein) 25439,25443,21608 Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein/pathogenesis-like protein),At1g75030 (Thaumatin-like protein) (Thaumatin-like protein 3) (Thaumatin-like protein; 28949-28112),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin-like pathogenesis-related protein) locus:2037227;,locus:2027161;,locus:2047369; AT1G75050,AT1G75030,AT2G24810 pathogenesis-related protein 5-like Os03g0233200 protein,Os07g0140232 protein,Os05g0538500 protein A0A0P0VV61,A0A0N7KMX1,A0A0P0WQ76 A0A0P0VV61_ORYSJ,A0A0N7KMX1_ORYSJ,A0A0P0WQ76_ORYSJ Os03g0233200 OSNPB_030233200,Os07g0140232 OSNPB_070140232,Os05g0538500 OSNPB_050538500 ENOG411DUQW COX15 Q9FKT8 COX15_ARATH Cytochrome c oxidase assembly protein COX15 FUNCTION: May be involved in the biosynthesis of heme A. {ECO:0000250}. R-ATH-189451; 50127 Cytochrome c oxidase assembly protein COX15 integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; heme a biosynthetic process [GO:0006784] locus:2161785; AT5G56090 cytochrome c oxidase assembly protein Os08g0496000 protein (Putative cytochrome c oxidase subunit 15(COX15) homolog isoform 1) (cDNA clone:J033121L24, full insert sequence) Q6Z5C5 Q6Z5C5_ORYSJ Os08g0496000 Os08g0496000 B1142B04.27 OSNPB_080496000 ENOG411DUQT TULP8,TLP8 Q9S9M8,A0A1P8AUE4,F4I2T3 TLP8_ARATH,A0A1P8AUE4_ARATH,F4I2T3_ARATH Tubby-like protein 8 (AtTLP8),Tubby like protein 8 44488,32165,41107 Tubby-like protein 8 (AtTLP8),Tubby like protein 8 phosphatidylinositol binding [GO:0035091],cytosol [GO:0005829]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620] TISSUE SPECIFICITY: Mostly expressed in roots, flowers and siliques. {ECO:0000269|PubMed:15064372}. locus:2200497; AT1G16070 tubby-like protein Tubby-like protein 4 (OsTLP4) (Tubby-like F-box protein 13) (OsTLP13),Os02g0179400 protein Q6ETL2,A0A0P0VFG1 TLP4_ORYSJ,A0A0P0VFG1_ORYSJ TULP4 TULP13 Os02g0179400 LOC_Os02g08310 P0544B02.22,Os02g0179400 OSNPB_020179400 ENOG411DUQU MMS21 Q8GYH7 NSE2_ARATH E3 SUMO-protein ligase MMS21 (EC 6.3.2.-) (MMS21 homolog) (AtMMS21) (Protein HIGH PLOIDY 2) DISRUPTION PHENOTYPE: Dwarf plants with short roots and defective meristems. {ECO:0000269|PubMed:19666737, ECO:0000269|PubMed:19682286}. premature transition from mitotic cycle to the endocycle; severe dwarfism with defective meristems. Dwarf; Short primary root under vertical growth-C. Yang-2009 FUNCTION: E3 SUMO-protein ligase that modulates cell cycle progression and functions as a repressor of endocycle onset in meristems. May function downstream of the meristem patterning transcription factors PLETHORA 1 and 2 (PLT1 and PLT2) in root meristem development. Modulates the expression of the mitotic cyclins CYCB1-1 and CYCB1-2 and cyclin-dependent kinases CDKB1-1 and CDKB2-1 in root meristem. Involved in cytokinin signaling in root development. {ECO:0000269|PubMed:19666737, ECO:0000269|PubMed:19682286}. PATHWAY: Protein modification; protein sumoylation. 6.3.2.- 27717 E3 SUMO-protein ligase MMS21 (EC 6.3.2.-) (MMS21 homolog) (AtMMS21) (Protein HIGH PLOIDY 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; Smc5-Smc6 complex [GO:0030915]; ligase activity [GO:0016874]; SUMO transferase activity [GO:0019789]; zinc ion binding [GO:0008270]; cell cycle [GO:0007049]; cellular response to DNA damage stimulus [GO:0006974]; cytokinin-activated signaling pathway [GO:0009736]; double-strand break repair via homologous recombination [GO:0000724]; germ-line stem-cell niche homeostasis [GO:0060250]; negative regulation of DNA endoreduplication [GO:0032876]; positive regulation of cell proliferation [GO:0008284]; positive regulation of cytokinin-activated signaling pathway [GO:0080038]; positive regulation of mitotic cell cycle [GO:0045931]; protein sumoylation [GO:0016925]; regulation of meristem development [GO:0048509]; regulation of root meristem growth [GO:0010082] locus:2083641; AT3G15150 E3 SUMO-protein ligase Os05g0563500 protein (cDNA clone:J033106F17, full insert sequence) Q6AUG5 Q6AUG5_ORYSJ Os05g0563500 Os05g0563500 OSJNBb0053D02.6 OSNPB_050563500 ENOG411DUQP PCMP-E2 O49680 PP324_ARATH Pentatricopeptide repeat-containing protein At4g19220, mitochondrial 105027 Pentatricopeptide repeat-containing protein At4g19220, mitochondrial chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA processing [GO:0031425]; RNA modification [GO:0009451] AT4G19220 Pentatricopeptide repeat-containing protein Os01g0938000 protein (PPR-repeat protein-like) Q8S1U2 Q8S1U2_ORYSJ Os01g0938000 OsJ_04704 OSNPB_010938000 P0504E02.23 ENOG411DUQZ SKP2B,SKP2A O49286,Q9LPL4,A0A1P8AT24 SKP2B_ARATH,SKP2A_ARATH,A0A1P8AT24_ARATH F-box protein SKP2B (F-box/LRR-repeat protein 5) (AtFB5) (SKP2-like protein 2) (AtSKP2;2),F-box protein SKP2A (FBL5-like protein) (AtFBL5) (SKP2-like protein 1) (AtSKP2;1),RNI-like superfamily protein FUNCTION: Component of SCF(SKP2B) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of the cyclin-dependent kinase inhibitor KRP1. Does not interact with auxin. {ECO:0000269|PubMed:18005227, ECO:0000269|PubMed:21139066}.,FUNCTION: Component of SCF(SKP2A) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (including cell cycle repressors). Acts as an auxin receptor. Regulates the stability of the transcription factors E2FC and DPB, repressors of cell proliferation. Confers increase tolerance to osmotic stress by promoting cell division, especially in meristems. Promotes the formation of lateral root primordia. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:18036202, ECO:0000269|PubMed:19704565, ECO:0000269|PubMed:21139066}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664;R-ATH-983168; 39909,39614,28650 F-box protein SKP2B (F-box/LRR-repeat protein 5) (AtFB5) (SKP2-like protein 2) (AtSKP2;2),F-box protein SKP2A (FBL5-like protein) (AtFBL5) (SKP2-like protein 1) (AtSKP2;1),RNI-like superfamily protein heat acclimation [GO:0010286]; negative regulation of lateral root development [GO:1901332]; proteolysis involved in cellular protein catabolic process [GO:0051603],nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin-protein transferase activity [GO:0004842]; auxin-activated signaling pathway [GO:0009734]; cellular response to auxin stimulus [GO:0071365]; lateral root formation [GO:0010311]; positive regulation of cell division [GO:0051781]; protein ubiquitination [GO:0016567]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] DEVELOPMENTAL STAGE: Widely expressed during the first stages of germination. In seedling, more intense in dividing areas, such as meristems and young organs. In leaves, confined to vascular tissue and stomatal cells. In roots, detected in tips, vascular cylinder of the distal part, and in lateral roots emerging primordia. Low levels in specific cells of root meristems. {ECO:0000269|PubMed:18036202}. TISSUE SPECIFICITY: Expressed in embryo, seedlings, hypocotyl, roots, leaves and flowers. {ECO:0000269|PubMed:18036202}. locus:2025222;,locus:2027082; AT1G77000,AT1G21410 LRR_CC NA NA NA NA NA NA NA ENOG411DUQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0212500 protein A0A0P0V041 A0A0P0V041_ORYSJ Os01g0212500 OSNPB_010212500 ENOG411EHM8 Q1G3T8 Q1G3T8_ARATH Uncharacterized protein 12365 Uncharacterized protein locus:5019474621; AT1G25422 NA NA NA NA NA NA NA NA ENOG411EHM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0165200 protein Q0E3M8 Q0E3M8_ORYSJ Os02g0165200 Os02g0165200 OSNPB_020165200 ENOG411EHM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os01g0932400 protein A0A0P0VCL8 A0A0P0VCL8_ORYSJ Os01g0932400 OSNPB_010932400 ENOG411EHMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMU ycf15-A; ycf15-B P56809 YCF15_ARATH Uncharacterized protein ycf15 (ORF77) 9014 Uncharacterized protein ycf15 (ORF77) chloroplast [GO:0009507] locus:504954479;locus:504954710; ATCG00870ATCG01270; Chloroplast protein precursor Ycf15 putative NA NA NA NA NA NA NA ENOG411EHMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os04g0603800 protein (Fragment) Q0JAE0 Q0JAE0_ORYSJ Os04g0603800 Os04g0603800 OSNPB_040603800 ENOG411EHMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding protein NA NA NA NA NA NA NA ENOG411EHMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5D2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EJUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAR domain NA NA NA NA NA NA NA ENOG411DPPX EMB2024 Q8LEV7,Q84WW2 6PGL3_ARATH,6PGL5_ARATH Probable 6-phosphogluconolactonase 3 (6PGL 3) (EC 3.1.1.31),Probable 6-phosphogluconolactonase 5, chloroplastic (6PGL 5) (EC 3.1.1.31) (Protein EMBRYO DEFECTIVE 2024) Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. {ECO:0000250}. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 2/3. ARA:AT5G24420-MONOMER;,ARA:AT5G24400-MONOMER; R-ATH-71336; 3.1.1.31; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Pentose phosphate pathway (00030),Metabolic pathways (01100) 3.1.1.31 28476,35645 Probable 6-phosphogluconolactonase 3 (6PGL 3) (EC 3.1.1.31),Probable 6-phosphogluconolactonase 5, chloroplastic (6PGL 5) (EC 3.1.1.31) (Protein EMBRYO DEFECTIVE 2024) cytosol [GO:0005829]; 6-phosphogluconolactonase activity [GO:0017057]; carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt, oxidative branch [GO:0009051],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; peroxisome [GO:0005777]; plastid [GO:0009536]; 6-phosphogluconolactonase activity [GO:0017057]; carbohydrate metabolic process [GO:0005975]; cellular response to redox state [GO:0071461]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; nitrate assimilation [GO:0042128]; pentose-phosphate shunt, oxidative branch [GO:0009051] locus:2152916;,locus:2152906; AT5G24420,AT5G24400 6-phosphogluconolactonase NA NA NA NA NA NA NA ENOG411DPPZ Q94A33,F4IAM4 Q94A33_ARATH,F4IAM4_ARATH 5'-3' exonuclease family protein (At1g18090/T10F20_6),5'-3' exonuclease family protein R-ATH-5358565;R-ATH-5693616; 64778 5'-3' exonuclease family protein (At1g18090/T10F20_6),5'-3' exonuclease family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; exonuclease activity [GO:0004527]; DNA repair [GO:0006281] locus:2194085; AT1G18090 exonuclease NA NA NA NA NA NA NA ENOG411ECIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Permease for cytosine/purines uracil thiamine allantoin NA NA NA NA NA NA NA ENOG411ECIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like NA NA NA NA NA NA NA ENOG411DPPS F17F16.3 Q45GQ0,Q9FWR1,A0A1P8AQP5 Q45GQ0_ARATH,Q9FWR1_ARATH,A0A1P8AQP5_ARATH Uncharacterized protein,F17F16.3 protein 30527,36216,23846 Uncharacterized protein,F17F16.3 protein locus:2015641; AT1G16770 Inherit from euNOG: Conserved hypothetical protein Os02g0140800 protein A0A0P0VER6 A0A0P0VER6_ORYSJ Os02g0140800 OSNPB_020140800 ENOG411ECIQ CYP96A4,''cytochrome P450 Q9FHC8,O80806,A0A1P8BA57 Q9FHC8_ARATH,O80806_ARATH,A0A1P8BA57_ARATH Cytochrome P450 (Cytochrome P450, family 96, subfamily A, polypeptide 4),Cytochrome P450, family 96, subfamily A, polypeptide 3 (T8F5.12 protein),Cytochrome P450, family 96, subfamily A, polypeptide 4 ARA:GQT-1895-MONOMER;,ARA:GQT-1868-MONOMER; 57285,57749,56785 Cytochrome P450 (Cytochrome P450, family 96, subfamily A, polypeptide 4),Cytochrome P450, family 96, subfamily A, polypeptide 3 (T8F5.12 protein),Cytochrome P450, family 96, subfamily A, polypeptide 4 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2156677;,locus:2206295; AT5G52320,AT1G65340 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411ECIH GEBPL,MKD15.4 O04608,Q9SB42,Q1PED2,Q9FMY2 STKLR_ARATH,STKLS_ARATH,STKLK_ARATH,Q9FMY2_ARATH Probable transcription factor At4g01260 (Storekeeper-like protein At4g01260),GLABROUS1 enhancer-binding protein-like (Mediator-associated protein 1) (Protein GeBPL) (Storekeeper-like protein At4g25210) (Transcription factor At4g25210),Probable transcription factor At4g00130 (Storekeeper-like protein At4g00130),Mediator-associated-like protein FUNCTION: Transcription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}. 36224,40274,22548,15509 Probable transcription factor At4g01260 (Storekeeper-like protein At4g01260),GLABROUS1 enhancer-binding protein-like (Mediator-associated protein 1) (Protein GeBPL) (Storekeeper-like protein At4g25210) (Transcription factor At4g25210),Probable transcription factor At4g00130 (Storekeeper-like protein At4g00130),Mediator-associated-like protein regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; cytosol [GO:0005829]; mediator complex [GO:0016592]; nucleolus [GO:0005730]; regulation of transcription, DNA-templated [GO:0006355] locus:2125068;,locus:2122659;,locus:2126871;,locus:2166771; AT4G01260,AT4G25210,AT4G00130,AT5G23180 Protein of unknown function DUF573 NA NA NA NA NA NA NA ENOG411E7W9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DS3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein (DUF2363) Expressed protein (Os11g0240900 protein) Q0ITL9 Q0ITL9_ORYSJ Os11g0240900 LOC_Os11g13694 Os11g0240900 OSNPB_110240900 ENOG411DQ1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR Transport inhibitor response 1-like protein Os11g0515500 (TIR1-like protein) Q2R3K5 TIRC_ORYSJ Os11g0515500 LOC_Os11g31620 MISCELLANEOUS: The myo-inositol hexakisphosphate acts as a structural cofactor. {ECO:0000250}. ENOG411DQ1M PAHX Q9ZVF6 PAHX_ARATH Phytanoyl-CoA dioxygenase (EC 1.14.11.18) (Phytanoyl-CoA 2-hydroxylase) DISRUPTION PHENOTYPE: No visible phenotypes under normal growth conditions. {ECO:0000269|PubMed:21788362}. FUNCTION: Converts phytanoyl-CoA to 2-hydroxyphytanoyl-CoA. {ECO:0000269|PubMed:21788362}. PATHWAY: Lipid metabolism; fatty acid metabolism. 1.14.11.18 32028 Phytanoyl-CoA dioxygenase (EC 1.14.11.18) (Phytanoyl-CoA 2-hydroxylase) plasma membrane [GO:0005886]; L-ascorbic acid binding [GO:0031418]; metal ion binding [GO:0046872]; phytanoyl-CoA dioxygenase activity [GO:0048244]; fatty acid metabolic process [GO:0006631] locus:2049536; AT2G01490 phytanoyl-CoA dioxygenase NA NA NA NA NA NA NA ENOG411E7CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: plastid-specific 50S ribosomal protein 5 NA NA NA NA NA NA NA ENOG411E9CM ABCC6 Q8VZZ4 AB6C_ARATH ABC transporter C family member 6 (ABC transporter ABCC.6) (AtABCC6) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 8) (Glutathione S-conjugate-transporting ATPase 8) (Multidrug resistance-associated protein 8) FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}. ARA:AT3G13090-MONOMER; 3.6.3.44 164367 ABC transporter C family member 6 (ABC transporter ABCC.6) (AtABCC6) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 8) (Glutathione S-conjugate-transporting ATPase 8) (Multidrug resistance-associated protein 8) integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}. locus:2090039; AT3G13090 ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411E7CF T8B10_200 P38389,Q9M206 SC61B_ARATH,Q9M206_ARATH Protein transport protein Sec61 subunit beta FUNCTION: Necessary for protein translocation in the endoplasmic reticulum.,FUNCTION: Necessary for protein translocation in the endoplasmic reticulum. {ECO:0000256|PIRNR:PIRNR006398}. R-ATH-381038; Phagosome (04145),Protein export (03060),Vibrio cholerae infection (05110),Protein processing in endoplasmic reticulum (04141) 8217 Protein transport protein Sec61 subunit beta endoplasmic reticulum Sec complex [GO:0031205]; integral component of membrane [GO:0016021]; Sec61 translocon complex [GO:0005784]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; posttranslational protein targeting to membrane, translocation [GO:0031204]; SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616] locus:2055567;,locus:2103376; AT2G45070,AT3G60540 protein transport protein sec61 Protein transport protein Sec61 subunit beta Q0JLV5,Q2QX17 Q0JLV5_ORYSJ,Q2QX17_ORYSJ Os01g0565900 Os01g0565900 OsJ_02256 OSNPB_010565900,Os12g0173366 LOC_Os12g07490 Os12g0173366 OsJ_35385 OSNPB_120173366 FUNCTION: Necessary for protein translocation in the endoplasmic reticulum. {ECO:0000256|PIRNR:PIRNR006398}. ENOG411E7CI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0917300 protein (cDNA, clone: J065041P21, full insert sequence) A3A0X6 A3A0X6_ORYSJ Os01g0917300 OsJ_04547 OSNPB_010917300 ENOG411E7CN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prohead core protein protease NA NA NA NA NA NA NA ENOG411E9C4 FUT3 Q9CA71,A0A1P8ANB1,A0A1P8AN91,F4HVN0 FUT3_ARATH,A0A1P8ANB1_ARATH,A0A1P8AN91_ARATH,F4HVN0_ARATH Fucosyltransferase 3 (AtFUT3) (EC 2.4.1.-),Fucosyltransferase 3 FUNCTION: May be involved in cell wall biosynthesis. May act as a fucosyltransferase. PATHWAY: Protein modification; protein glycosylation. ARA:AT1G74420-MONOMER; 2.4.1.- 58989,63639,63238,59390 Fucosyltransferase 3 (AtFUT3) (EC 2.4.1.-),Fucosyltransferase 3 Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969],integral component of membrane [GO:0016021]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall biogenesis [GO:0042546],integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall biogenesis [GO:0042546] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and seedlings. locus:2019120; AT1G74420 Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411E9C3 NEAP4,NEAP3 F4I0Z6,Q4PT37,F4I0Z3 NEAP4_ARATH,NEAP3_ARATH,F4I0Z3_ARATH Putative nuclear envelope-associated protein 4 (AtNEAP4),Nuclear envelope-associated protein 3 (AtNEAP3),Myosin heavy chain, cardiac protein DISRUPTION PHENOTYPE: Double mutants NEAP1-NEAP3 display reduced primary root growth, and altered nuclear morphology and chromatin structure. {ECO:0000269|PubMed:27630107}. 12477,39001,38728 Putative nuclear envelope-associated protein 4 (AtNEAP4),Nuclear envelope-associated protein 3 (AtNEAP3),Myosin heavy chain, cardiac protein nuclear envelope [GO:0005635]; nucleoplasm [GO:0005654]; protein self-association [GO:0043621] locus:504956315;,locus:2012370; AT1G09483,AT1G09470 NA NA NA NA NA NA NA NA ENOG411E9C0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EEUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DQG4 F4JSJ6 F4JSJ6_ARATH DNA photolyase 78269 DNA photolyase hydrolase activity [GO:0016787]; lyase activity [GO:0016829] locus:2122654; AT4G25290 DNA photolyase Deoxyribodipyrimidine photolyase family protein-like (Os09g0532700 protein) Q652J5 Q652J5_ORYSJ Os09g0532700 Os09g0532700 OJ1254_E07.33 OSNPB_090532700 P0515E01.18 ENOG411DQG5 APS4,APS1,APS3,APS2 Q9S7D8,Q9LIK9,O23324,Q43870,A0A1P8B8I9 APS4_ARATH,APS1_ARATH,APS3_ARATH,APS2_ARATH,A0A1P8B8I9_ARATH ATP sulfurylase 4, chloroplastic (EC 2.7.7.4),ATP sulfurylase 1, chloroplastic (AtPS1) (EC 2.7.7.4),ATP-sulfurylase 3, chloroplastic (EC 2.7.7.4),ATP sulfurylase 2 (EC 2.7.7.4),Pseudouridine synthase/archaeosine transglycosylase-like family protein FUNCTION: Mediates selenate (Se) reduction, and promotes Se and sulfur (S) uptake and assimilation. {ECO:0000269|PubMed:9880353}. PATHWAY: Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 1/3. MetaCyc:AT5G43780-MONOMER;,ARA:AT3G22890-MONOMER;MetaCyc:AT3G22890-MONOMER;,MetaCyc:AT4G14680-MONOMER;,MetaCyc:AT1G19920-MONOMER; R-ATH-174362; 2.7.7.4 52126,51459,52030,53638,57526 ATP sulfurylase 4, chloroplastic (EC 2.7.7.4),ATP sulfurylase 1, chloroplastic (AtPS1) (EC 2.7.7.4),ATP-sulfurylase 3, chloroplastic (EC 2.7.7.4),ATP sulfurylase 2 (EC 2.7.7.4),Pseudouridine synthase/archaeosine transglycosylase-like family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; sulfate adenylyltransferase (ATP) activity [GO:0004781]; hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation [GO:0000103],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plasma membrane [GO:0005886]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; sulfate adenylyltransferase (ATP) activity [GO:0004781]; hydrogen sulfide biosynthetic process [GO:0070814]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; selenium compound metabolic process [GO:0001887]; sulfate assimilation [GO:0000103],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; sulfate adenylyltransferase (ATP) activity [GO:0004781]; cellular response to sulfate starvation [GO:0009970]; hydrogen sulfide biosynthetic process [GO:0070814]; protein trimerization [GO:0070206]; sulfate assimilation [GO:0000103],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; sulfate adenylyltransferase (ATP) activity [GO:0004781]; cellular response to sulfate starvation [GO:0009970]; hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation [GO:0000103],sulfate adenylyltransferase (ATP) activity [GO:0004781]; sulfate assimilation [GO:0000103] TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:10806350}.,TISSUE SPECIFICITY: Mostly expressed in leaves or cotyledons. {ECO:0000269|PubMed:8647819}. locus:2170867;,locus:2084563;,locus:2130080;,locus:2035395; AT5G43780,AT3G22890,AT4G14680,AT1G19920 atp sulfurylase Os04g0111200 protein (Fragment),Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed (Os03g0743900 protein) (Putative ATP sulfurylase) (cDNA clone:J013043O08, full insert sequence),Os04g0111225 protein (Fragment) Q0JFE2,Q84MN8,A0A0P0W625 Q0JFE2_ORYSJ,Q84MN8_ORYSJ,A0A0P0W625_ORYSJ Os04g0111200 Os04g0111200 OSNPB_040111200,OSJNBb0036F07.7 LOC_Os03g53230 Os03g0743900 OSNPB_030743900,Os04g0111225 OSNPB_040111225 ENOG411EEUS Q9XI35,Q8L920 Q9XI35_ARATH,Q8L920_ARATH AT1G15350 protein (At1g15350) (DUF4050 family protein) (F9L1.29 protein),DUF4050 family protein (Uncharacterized protein At1g15350) 12214,17156 AT1G15350 protein (At1g15350) (DUF4050 family protein) (F9L1.29 protein),DUF4050 family protein (Uncharacterized protein At1g15350) locus:2037878; AT1G15350 Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411EEUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9C8 NLP3,NIN-like protein 3 Q9SVF1,A0A1P8B7T2 NLP3_ARATH,A0A1P8B7T2_ARATH Protein NLP3 (AtNLP3) (NIN-like protein 3) (Nodule inception protein-like protein 3),Plant regulator RWP-RK family protein FUNCTION: Probable transcription factor. {ECO:0000250}. 85067,77070 Protein NLP3 (AtNLP3) (NIN-like protein 3) (Nodule inception protein-like protein 3),Plant regulator RWP-RK family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2121738; AT4G38340 RWP-RK domain-containing protein NA NA NA NA NA NA NA ENOG411E6MS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dormancy/auxin associated protein Os09g0437500 protein (cDNA clone:J013002C17, full insert sequence) (cDNA clone:J013052O10, full insert sequence) Q0J1I6 Q0J1I6_ORYSJ Os09g0437500 Os09g0437500 OsJ_29502 OSNPB_090437500 ENOG411E9B9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E6MZ A0A1P8APD0,F4I6Q0 A0A1P8APD0_ARATH,F4I6Q0_ARATH Serine/Threonine-kinase 29035,29422 Serine/Threonine-kinase kinase activity [GO:0016301] locus:2014225; AT1G64340 NA Os06g0525200 protein Q653B0 Q653B0_ORYSJ Os06g0525200 OJ1616_B03.34 OSJNBa0043B22.1 OSNPB_060525200 ENOG411E6MD OFP1 Q9LZW2 OFP1_ARATH Transcription repressor OFP1 (Ovate family protein 1) (AtOFP1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are hypersensitive to the DNA-damaging agents methyl methanesulfonate (MMS) and menadione. {ECO:0000269|PubMed:15781858, ECO:0000269|PubMed:17461792, ECO:0000269|PubMed:20844935, ECO:0000269|PubMed:21457372, ECO:0000269|PubMed:21886836}. Phenotype not described. Sensitive to genotoxic stress-R. Pan-2010 FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. Controls the subcellular localization of the homeodomain protein BLH1. Plays a role in the regulation of cell elongation by controlling the expression of GA20OX1, a gene that encodes a key enzyme in gibberellin biosynthesis. May play a role in double-stranded DNA repair through the DNA non-homologous end joining (NHEJ) pathway along with KU70 and KU80 protein complex. Possesses DNA-binding activity towards double-stranded and single-stranded DNA in vitro. {ECO:0000269|PubMed:15781858, ECO:0000269|PubMed:17461792, ECO:0000269|PubMed:20844935, ECO:0000269|PubMed:21457372, ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP1 show stunted growth with general delayed development and shortening and thickening of all aerial parts. Leaves are irregularly heart-shaped and lobed and display curved surfaces. Anthers are short with a thick filament and style and stigma protruded from the flower. Siliques are short and uneven and produce few seeds (PubMed:15781858 and PubMed:21886836). 30030 Transcription repressor OFP1 (Ovate family protein 1) (AtOFP1) cytoskeleton [GO:0005856]; nucleolus [GO:0005730]; DNA binding [GO:0003677]; DNA repair [GO:0006281]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of unidimensional cell growth [GO:0051510]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, xylem of stems, flower buds and siliques. {ECO:0000269|PubMed:17461792, ECO:0000269|PubMed:21457372, ECO:0000269|PubMed:21886836}. locus:2180977; AT5G01840 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E6MB LEA18 Q96273 LEA18_ARATH Late embryogenesis abundant protein 18 (Late embryogenesis abundant protein 4-2) (AtLEA4-2) FUNCTION: Involved dehydration tolerance. Involved in the adaptive response of vascular plants to withstand water deficit (PubMed:20668063). May possess chaperone-like activity under water deficit (PubMed:27006402). Binds to negatively charged membranes of liposomes. This binding induces partial folding of the largely unstructured LEA18 protein, vesicle aggregation, and leakage of soluble content from liposomes (PubMed:20875393). {ECO:0000269|PubMed:20668063, ECO:0000269|PubMed:20875393, ECO:0000269|PubMed:27006402}. MISCELLANEOUS: Under water deficit, the N-terminal region is necessary and sufficient for conformational transition from disordered to alpha-helix folding. This conformational transition is required for chaperone-like activity under water limitation. {ECO:0000269|PubMed:27006402}. 10481 Late embryogenesis abundant protein 18 (Late embryogenesis abundant protein 4-2) (AtLEA4-2) cytosol [GO:0005829]; embryo development ending in seed dormancy [GO:0009793]; pollen tube development [GO:0048868]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414]; seed development [GO:0048316] DEVELOPMENTAL STAGE: Expressed during embryo development and in dry seed. Expression decreases significantly after seed germination. {ECO:0000269|PubMed:20668063}. locus:2063409; AT2G35300 late embryogenesis abundant group 1 OSJNBa0086O06.12 protein (Os04g0589800 protein) (cDNA clone:001-119-E08, full insert sequence) Q7XLZ7 Q7XLZ7_ORYSJ Os04g0589800 OSJNBa0086O06.12 OSNPB_040589800 ENOG411E6MA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411E6MJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF702) NA NA NA NA NA NA NA ENOG411E6MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os11g0702400 protein (Zinc finger, C2H2 type family protein, expressed) (Zinc finger, C2H2 type, putative) (cDNA clone:001-103-H07, full insert sequence) (cDNA clone:001-111-B01, full insert sequence) Q53NL6 Q53NL6_ORYSJ Os11g0702400 LOC_Os11g47630 Os11g0702400 OsJ_34843 OSNPB_110702400 ENOG411E6M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 11b (OsTIFY11b) (Jasmonate ZIM domain-containing protein 10) (OsJAZ10) (OsJAZ4) Q10QW3 TI11B_ORYSJ TIFY11B JAZ10 Os03g0181100 LOC_Os03g08330 OSJNBa0050H14.24 OSJNBb0076N15.10 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411E6M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein PYRICULARIA ORYZAE RESISTANCE 21 (Pi21),OSJNBb0014D23.15 protein (Os04g0400800 protein),Os04g0400700 protein,Os04g0400000 protein Q7XL73,Q7XL74,A0A0P0W9W1,A0A0N7KJ00 PI21_ORYSJ,Q7XL74_ORYSJ,A0A0P0W9W1_ORYSJ,A0A0N7KJ00_ORYSJ PI21 rMg40 LOC_Os04g32850 Os04g0401000 OsJ_14657 OSJNBb0014D23.16 OSNPB_040401000,Os04g0400800 Os04g0400800 OSJNBb0014D23.15 OSNPB_040400800,Os04g0400700 OSNPB_040400700,Os04g0400000 OSNPB_040400000 DISRUPTION PHENOTYPE: The pi21 allele confers an improved non-race-specific blast resistance toward Magnaporthe oryzae (PubMed:19696351). Reduced salicylic acid (SA) responses (e.g. WRKY45 expression) but increased systemic acquired response (SAR, e.g. PR1b and PBZ1 accumulation), jasmonic acid (JA, e.g. JAmyb expression) and abscisic acid (ABA, e.g. SalT expression) responses in response to M.oryzae spores (PubMed:26740780). {ECO:0000269|PubMed:19696351, ECO:0000269|PubMed:26740780}. FUNCTION: Involved in defense responses (PubMed:19696351, PubMed:26740780). Contributes to slowing defense responses toward Magnaporthe oryzae (PubMed:19696351). {ECO:0000269|PubMed:19696351, ECO:0000269|PubMed:26740780}. ENOG411EBBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dehydrogenase E1 component NA NA NA NA NA NA NA ENOG411EBBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os12g0551200 protein,Os12g0550900 protein,Expressed protein (Os12g0551200 protein) (cDNA clone:001-124-E09, full insert sequence),Os12g0261300 protein (Fragment),Os12g0552000 protein,Os12g0548800 protein (Fragment),Os12g0550700 protein,Os12g0550766 protein,Os12g0549800 protein Q0IMR7,Q2QNX2,Q2QNW7,A0A0P0Y8N6,A0A0P0YB64,A0A0P0YB35,A0A0P0Y8Q9,A0A0P0YB28,A0A0P0YB92,A0A0P0YB41,A0A0P0YBJ3 Q0IMR7_ORYSJ,Q2QNX2_ORYSJ,Q2QNW7_ORYSJ,A0A0P0Y8N6_ORYSJ,A0A0P0YB64_ORYSJ,A0A0P0YB35_ORYSJ,A0A0P0Y8Q9_ORYSJ,A0A0P0YB28_ORYSJ,A0A0P0YB92_ORYSJ,A0A0P0YB41_ORYSJ,A0A0P0YBJ3_ORYSJ Os12g0551200 Os12g0551200 OSNPB_120551200,Os12g0550900 LOC_Os12g36440 OSNPB_120550900,Os12g0551200 LOC_Os12g36490 OSNPB_120551200,Os12g0261300 OSNPB_120261300,Os12g0552000 OSNPB_120552000,Os12g0548800 OSNPB_120548800,Os12g0550700 OSNPB_120550700,Os12g0551200 OSNPB_120551200,Os12g0550766 OSNPB_120550766,Os12g0549800 OSNPB_120549800 ENOG411EBBA T30F21.19 Q9SYN4 Q9SYN4_ARATH F-box/LRR protein (F3F9.2) (T30F21.19 protein) 38986 F-box/LRR protein (F3F9.2) (T30F21.19 protein) locus:2032115; AT1G78470 NA NA NA NA NA NA NA NA ENOG411EBBG PFK1 Q9M0F9 PFKA1_ARATH ATP-dependent 6-phosphofructokinase 1 (ATP-PFK 1) (Phosphofructokinase 1) (EC 2.7.1.11) (Phosphohexokinase 1) FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000255|HAMAP-Rule:MF_03186}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4. {ECO:0000255|HAMAP-Rule:MF_03186}. ARA:AT4G29220-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.11; 2.7.1.11 51991 ATP-dependent 6-phosphofructokinase 1 (ATP-PFK 1) (Phosphofructokinase 1) (EC 2.7.1.11) (Phosphohexokinase 1) cytosol [GO:0005829]; plasma membrane [GO:0005886]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; fructose 6-phosphate metabolic process [GO:0006002]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:17485088}. locus:2118249; AT4G29220 Phosphofructokinase NA NA NA NA NA NA NA ENOG411EBBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin efflux carrier component NA NA NA NA NA NA NA ENOG411EBBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411EBBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyphenol oxidase middle domain NA NA NA NA NA NA NA ENOG411EBBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Ankyrin repeat protein E4_8-like (Os09g0124800 protein),Ankyrin repeat protein-like (Os09g0123500 protein) (cDNA clone:J023145M04, full insert sequence),Os09g0124232 protein,Os09g0124100 protein Q6K4H9,Q6K268,A0A0P0XIL3,A0A0P0XJZ6 Q6K4H9_ORYSJ,Q6K268_ORYSJ,A0A0P0XIL3_ORYSJ,A0A0P0XJZ6_ORYSJ Os09g0124800 OJ1227_D07.20 OsJ_28424 OSNPB_090124800,Os09g0123500 Os09g0123500 OsJ_28416 OSNPB_090123500 P0415D04.50,Os09g0124232 OSNPB_090124232,Os09g0124100 OSNPB_090124100 ENOG411EBBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EBBS GSTU22 Q8GYM1 GSTUM_ARATH Glutathione S-transferase U22 (AtGSTU22) (EC 2.5.1.18) (GST class-tau member 22) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G78340-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25282 Glutathione S-transferase U22 (AtGSTU22) (EC 2.5.1.18) (GST class-tau member 22) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2032030; AT1G78340 Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EBBR Q9MAA6 Q9MAA6_ARATH Paramyosin-like protein (T12H1.9 protein) 73268 Paramyosin-like protein (T12H1.9 protein) integral component of membrane [GO:0016021] locus:2096334; AT3G05130 NA NA NA NA NA NA NA NA ENOG411EBBQ CYP71B28,CYP71B15,CYP71B23 Q9SAE3,Q9LW27,Q9LTM0 C71BS_ARATH,C71BF_ARATH,C71BN_ARATH Cytochrome P450 71B28 (EC 1.14.-.-),Bifunctional dihydrocamalexate synthase/camalexin synthase (EC 1.3.1.n2) (Cytochrome P450 71B15) (Dihydrocamalexate:NADP(+) oxidoreductase (decarboxylating)) (Protein PHYTOALEXIN DEFICIENT 3),Cytochrome P450 71B23 (EC 1.14.-.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but deficient in the phytoalexin camalexin accumulation upon bacterial infection and markedly increased susceptibility to infection by the necrotrophic fungus Alternaria brassicicola. {ECO:0000269|PubMed:10476063, ECO:0000269|PubMed:12848825, ECO:0000269|PubMed:8090752}. reduced camalexin synthesis in response to infection. Susceptible to fungal infection; Low camalexin levels-J. Glazebrook-1999 FUNCTION: Multifunctional enzyme involved in the biosynthesis of the indole-derived phytoalexin camalexin. Catalyzes two reactions, the formation of dihydrocamalexate from indole-3-acetonitrile-cysteine conjugate and the oxidative decarboxylation of dihydrocamalexate which is the final step in camalexin biosynthesis. Required for the resistance to the fungal pathogens A.brassicicola, B.cinerea, B.elliptica, B.tulipae, L.maculans and Colletotrichum higginsianum. Seems not to be required for resistance to P.syringae, P.porri, and not involved in age-related resistance. {ECO:0000269|PubMed:10476063, ECO:0000269|PubMed:10590168, ECO:0000269|PubMed:11722772, ECO:0000269|PubMed:11884688, ECO:0000269|PubMed:12848825, ECO:0000269|PubMed:14675428, ECO:0000269|PubMed:16766671, ECO:0000269|PubMed:17384165, ECO:0000269|PubMed:17573535, ECO:0000269|PubMed:18567828, ECO:0000269|PubMed:19154205, ECO:0000269|PubMed:19567706, ECO:0000269|PubMed:20507477, ECO:0000269|PubMed:8090752}. ARA:AT1G13090-MONOMER;,ARA:AT3G26830-MONOMER;MetaCyc:AT3G26830-MONOMER;,ARA:AT3G26210-MONOMER; 1.14.-.-,1.3.1.n2 56537,56061,56923 Cytochrome P450 71B28 (EC 1.14.-.-),Bifunctional dihydrocamalexate synthase/camalexin synthase (EC 1.3.1.n2) (Cytochrome P450 71B15) (Dihydrocamalexate:NADP(+) oxidoreductase (decarboxylating)) (Protein PHYTOALEXIN DEFICIENT 3),Cytochrome P450 71B23 (EC 1.14.-.-) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; dihydrocamalexic acid decarboxylase activity [GO:0010298]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; camalexin biosynthetic process [GO:0010120]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; indole phytoalexin biosynthetic process [GO:0009700]; regulation of systemic acquired resistance [GO:0010112]; response to abscisic acid [GO:0009737]; response to bacterium [GO:0009617]; response to insect [GO:0009625]; response to water deprivation [GO:0009414] locus:2031915;,locus:2088394;,locus:2093531; AT1G13090,AT3G26830,AT3G26210 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EBBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal Proteins L2 RNA binding domain NA NA NA NA NA NA NA ENOG411EBBW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBBV SRK2H,SRK2G,SNRK2.1 Q9FFP9,P43292,A0A1P8B8U9,A0A1P8BD58 SRK2H_ARATH,SRK2G_ARATH,A0A1P8B8U9_ARATH,A0A1P8BD58_ARATH Serine/threonine-protein kinase SRK2H (EC 2.7.11.1) (OST1-kinase-like 9) (SNF1-related kinase 2.5) (SnRK2.5),Serine/threonine-protein kinase SRK2G (EC 2.7.11.1) (Arabidopsis protein SK1) (OST1-kinase-like 8) (SNF1-related kinase 2.1) (SnRK2.1),Serine/Threonine kinase catalytic domain protein,SNF1-related protein kinase 2.1 2.7.11.1; 2.7.11.1 41554,40198,13207,31410 Serine/threonine-protein kinase SRK2H (EC 2.7.11.1) (OST1-kinase-like 9) (SNF1-related kinase 2.5) (SnRK2.5),Serine/threonine-protein kinase SRK2G (EC 2.7.11.1) (Arabidopsis protein SK1) (OST1-kinase-like 8) (SNF1-related kinase 2.1) (SnRK2.1),Serine/Threonine kinase catalytic domain protein,SNF1-related protein kinase 2.1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; mRNA binding [GO:0003729]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:15292193}. locus:2160559;,locus:2159597; AT5G63650,AT5G08590 SNF1-related protein kinase 2.1 NA NA NA NA NA NA NA ENOG411EBBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os08g0105700 protein (Putative P450) (cDNA clone:001-018-D09, full insert sequence),Os08g0105400 protein (Putative P450),Os06g0325900 protein (Putative P450) Q6ZD84,Q6ZJM5,Q69T84 Q6ZD84_ORYSJ,Q6ZJM5_ORYSJ,Q69T84_ORYSJ Os08g0105700 OJ1300_E01.16 OSNPB_080105700 P0450B04.1,Os08g0105400 OJ1300_E01.13 OsJ_25749 OSNPB_080105400,P0652D10.24 Os06g0325900 OSNPB_060325900 ENOG411EBBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF791) NA NA NA NA NA NA NA ENOG411EBBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411EBBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EBB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EBB0 AVP1 A8MQH1 A8MQH1_ARATH Inorganic H pyrophosphatase family protein Shoot defects include: smaller leaves decreased cell number in leaves mesophyll and vascular patterning disorganized cup-shaped cotyledons.Root defects: small cells at apex columella cell layers reduced to 2 deformed root cap. Abnormal cotyledon morphology; Small rosette; Thick leaves with uneven margins; Thick roots; Collapsed root tip; High penetrance of complete loss of flowering; Complete loss of flower formation; Sterile; Disorganized vascular patterning-R. Gaxiola-2005 3.6.1.1; 67707 Inorganic H pyrophosphatase family protein integral component of membrane [GO:0016021]; hydrogen-translocating pyrophosphatase activity [GO:0009678]; inorganic diphosphatase activity [GO:0004427]; proton transport [GO:0015992] AT1G15690 Inorganic H+ pyrophosphatase Inorganic diphosphatase, H+-translocating, vacuolar membrane (Os06g0644200 protein) (cDNA clone:J013098H04, full insert sequence),Os06g0178900 protein (Putative inorganic pyrophosphatase) (cDNA clone:J013091F19, full insert sequence),Inorganic diphosphatase, H+-translocating, vacuolar membrane-like (Os06g0644200 protein),Os02g0802500 protein (Proton translocating pyrophosphatase) (Vacuolar proton pyrophosphatase) Q67WN5,Q8H616,Q67WN4,Q75U53 Q67WN5_ORYSJ,Q8H616_ORYSJ,Q67WN4_ORYSJ,Q75U53_ORYSJ P0017B12.8-1 Os06g0644200 OSNPB_060644200,Os06g0178900 Os06g0178900 OsJ_20329 OSJNBa0035I03.12 OSNPB_060178900,P0017B12.8-2 Os06g0644200 OSNPB_060644200,OVP3 Os02g0802500 OSJNBa0032L17.38 OSNPB_020802500 P0689B12.15 ENOG411EBB7 NPF4.1,NPF4.2 Q9LSF0,Q9LSE8 PTR34_ARATH,PTR35_ARATH Protein NRT1/ PTR FAMILY 4.1 (AtNPF4.1) (Protein ABA-IMPORTING TRANSPORTER 3),Protein NRT1/ PTR FAMILY 4.2 (AtNPF4.2) (Protein ABA-IMPORTING TRANSPORTER 4) FUNCTION: Involved in (+) and (-)-abscisic acid transport (ABA) and in gibberellin import. {ECO:0000269|PubMed:22645333}.,FUNCTION: Involved in abscisic acid transport. {ECO:0000269|PubMed:22645333}. 57161,58353 Protein NRT1/ PTR FAMILY 4.1 (AtNPF4.1) (Protein ABA-IMPORTING TRANSPORTER 3),Protein NRT1/ PTR FAMILY 4.2 (AtNPF4.2) (Protein ABA-IMPORTING TRANSPORTER 4) integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in siliques and flowers. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:17481610}. locus:2090325;,locus:2090230; AT3G25260,AT3G25280 proton-dependent oligopeptide transport NA NA NA NA NA NA NA ENOG411EBB6 PHT1-6 Q9ZWT3,F4JJ78,F4JJ77 PHT16_ARATH,F4JJ78_ARATH,F4JJ77_ARATH Probable inorganic phosphate transporter 1-6 (AtPht1;6) (H(+)/Pi cotransporter),Inorganic phosphate transporter family protein,Major facilitator superfamily protein FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. 56247,16866,30901 Probable inorganic phosphate transporter 1-6 (AtPht1;6) (H(+)/Pi cotransporter),Inorganic phosphate transporter family protein,Major facilitator superfamily protein integral component of plasma membrane [GO:0005887]; inorganic phosphate transmembrane transporter activity [GO:0005315]; substrate-specific transmembrane transporter activity [GO:0022891]; symporter activity [GO:0015293]; phosphate ion transport [GO:0006817],integral component of plasma membrane [GO:0005887]; substrate-specific transmembrane transporter activity [GO:0022891] TISSUE SPECIFICITY: Expressed in anthers, tapetumand mature pollen and, to a lower extent, in hydathodes and vascular tissues of cotyledons of flowering plants. {ECO:0000269|PubMed:12164813}. locus:2176451;,locus:504955250;,locus:504955256; AT5G43340,AT4G08895,AT4G08878 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EBB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os10g0105933 protein (Fragment),Os10g0105900 protein A0A0P0XRC2,A0A0P0XR12 A0A0P0XRC2_ORYSJ,A0A0P0XR12_ORYSJ Os10g0105933 OSNPB_100105933,Os10g0105900 OSNPB_100105900 ENOG411EBB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pentatricopeptide repeat-containing protein At5g66520-like NA NA NA NA NA NA NA ENOG411EBB8 LSH5 Q9FGH2 LSH5_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 (Protein ORGAN BOUNDARY 5) FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. 19689 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 (Protein ORGAN BOUNDARY 5) nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] locus:2171263; AT5G58500 Protein of unknown function (DUF640) NA NA NA NA NA NA NA ENOG411E9WZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor bHLH68-like NA NA NA NA NA NA NA ENOG411DY19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) Os01g0513400 protein (cDNA clone:J023025D18, full insert sequence) Q5QND0 Q5QND0_ORYSJ Os01g0513400 OSNPB_010513400 P0504D03.28 ENOG411DY10 F6I1.13 Q8W4K2 Q8W4K2_ARATH Mitochondrial 28S ribosomal protein S29-like protein (Uncharacterized protein F6I1.13) 53784 Mitochondrial 28S ribosomal protein S29-like protein (Uncharacterized protein F6I1.13) mitochondrial small ribosomal subunit [GO:0005763]; structural constituent of ribosome [GO:0003735] locus:2015631; AT1G16870 28S ribosomal protein Os07g0202900 protein (Fragment) Q0D7X1 Q0D7X1_ORYSJ Os07g0202900 Os07g0202900 OSNPB_070202900 ENOG411DY11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inositol monophosphatase family Os12g0183200 protein A0A0P0Y8A3 A0A0P0Y8A3_ORYSJ Os12g0183200 OSNPB_120183200 ENOG411DY17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0528200 protein (Fragment) A0A0P0XIN8 A0A0P0XIN8_ORYSJ Os08g0528200 OSNPB_080528200 ENOG411DY14 Q0WW40 FBK5_ARATH F-box/kelch-repeat protein At1g16250 43066 F-box/kelch-repeat protein At1g16250 locus:2032855; AT1G16250 Kelch motif NA NA NA NA NA NA NA ENOG411DY1H SGS3 Q9LDX1,A0A1P8BE44 SGS3_ARATH,A0A1P8BE44_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 (AtSGS3),XS domain-containing protein / XS zinc finger domain-containing protein-like protein A proportion of pre-meiotic ovules have two MMCs and have several abnormally enlarged sub-epidermal cells.,Downward-curled leaf margins.,Enhanced susceptibility to virus reduction in post-transcriptional gene silencing,Infection with cucumber mosaic virus (CMV) revealed an overaccumulation of CMV RNA compared to wild type.,TAS1 TAS2 and TAS3 ta-siRNAs were below detectable levels.,Restoration of GUS activity of the transgene through inhibition of silencing.,Reduction in post-transcriptional gene silencing.,No obvious leaf developmental defects.,TAS1 TAS2 and TAS3 ta-siRNAs were detected. Susceptible to viral infection-H. Vaucheret-2000 FUNCTION: Required for post-transcriptional gene silencing and natural virus resistance. May bind nucleic acids and is essential for the biogenesis of trans-acting siRNAs but is not required for silencing induced by IR-PTGS. Involved in the juvenile-to-adult transition regulation. In case of begomoviruses infection, it is targeted by the viral protein V2 leading to suppression of post-transcriptional gene silencing. {ECO:0000269|PubMed:15165191, ECO:0000269|PubMed:15466488}. 71972,56751 Protein SUPPRESSOR OF GENE SILENCING 3 (AtSGS3),XS domain-containing protein / XS zinc finger domain-containing protein-like protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; nucleolar ribonuclease P complex [GO:0005655]; perinuclear region of cytoplasm [GO:0048471]; defense response to virus [GO:0051607]; production of ta-siRNAs involved in RNA interference [GO:0010267]; regulation of defense response to virus [GO:0050688]; vegetative phase change [GO:0010050]; viral process [GO:0016032]; virus induced gene silencing [GO:0009616]; wax biosynthetic process [GO:0010025],gene silencing by RNA [GO:0031047] locus:2171716; AT5G23570 Protein SUPPRESSOR OF GENE SILENCING Protein SUPPRESSOR OF GENE SILENCING 3 homolog (OsSGS3),Expressed protein (Os12g0197700 protein),Os12g0197500 protein (Fragment) Q2QWE9,Q2QWE8,A0A0P0Y7V5,A0A0P0Y7Z5 SGS3_ORYSJ,Q2QWE8_ORYSJ,A0A0P0Y7V5_ORYSJ,A0A0P0Y7Z5_ORYSJ SGS3 Os12g0197500 LOC_Os12g09580 OsJ_034141,Os12g0197700 LOC_Os12g09590 Os12g0197700 OsJ_35526 OSNPB_120197700,Os12g0197500 OSNPB_120197500 FUNCTION: Required for post-transcriptional gene silencing and natural virus resistance. {ECO:0000250}. ENOG411DY1N ALB3L3,ALB3L2 Q0WUC5,Q8L718,A0A1I9LM69 ALB33_ARATH,ALB32_ARATH,A0A1I9LM69_ARATH ALBINO3-like protein 3, mitochondrial,ALBINO3-like protein 2, chloroplastic (Ath5),Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein FUNCTION: Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. {ECO:0000250}.,FUNCTION: Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes. {ECO:0000250}. 62798,58287,49163 ALBINO3-like protein 3, mitochondrial,ALBINO3-like protein 2, chloroplastic (Ath5),Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; protein insertion into membrane [GO:0051205],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; protein insertion into membrane [GO:0051205],integral component of membrane [GO:0016021]; protein insertion into membrane [GO:0051205] locus:2100172;,locus:2014973; AT3G44370,AT1G65080 ALBINO3-like protein Os06g0171600 protein A0A0P0WTJ0 A0A0P0WTJ0_ORYSJ Os06g0171600 OSNPB_060171600 ENOG411DY1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb transcription factor (Os01g0142500 protein) (cDNA clone:J013124L02, full insert sequence) Q0JQS2 Q0JQS2_ORYSJ Os01g0142500 Os01g0142500 OsJ_00326 OSNPB_010142500 ENOG411DY1X FRS11 Q9SY66 FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 FUNCTION: Putative transcription activator involved in regulating light control of development. 77731 Protein FAR1-RELATED SEQUENCE 11 nucleus [GO:0005634]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2012828; AT1G10240 protein FAR1-RELATED SEQUENCE Os04g0443000 protein Q0JCY7 Q0JCY7_ORYSJ Os04g0443000 Os04g0443000 OSNPB_040443000 ENOG411DY1S FFC P37107 SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic (54 chloroplast protein) (54CP) (SRP54) (cpSRP54) (FFC) DISRUPTION PHENOTYPE: Pale green with delayed development. {ECO:0000269|PubMed:18633119}. Yellow first true leaves-N. Hoffman-1999 FUNCTION: Involved in cotranslational and post-translational sorting of thylakoid proteins. Binds GTP specifically. Activates the GTPase activity of CPFTSY when bound together. Required for light-harvesting chlorophyll a/b-binding protein (LHCP) integration into thylakoids. {ECO:0000269|PubMed:10480939, ECO:0000269|PubMed:11356852, ECO:0000269|PubMed:17475780, ECO:0000269|PubMed:18633119}. MISCELLANEOUS: Unlike eukaryotic or prokaryotic signal recognition particle (SRP), the chloroplast SRP from higher plants lacks an SRP-RNA component. It targets both chloroplast-encoded and nucleus-encoded substrates to the thylakoid membrane, post-translationally for the nucleus-encoded proteins and co-translationally for the chloroplast-encoded proteins. 61232 Signal recognition particle 54 kDa protein, chloroplastic (54 chloroplast protein) (54CP) (SRP54) (cpSRP54) (FFC) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; protein complex [GO:0043234]; signal recognition particle, chloroplast targeting [GO:0080085]; signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein domain specific binding [GO:0019904]; protein heterotrimerization [GO:0070208]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614] TISSUE SPECIFICITY: Most abundant in green shoot tissue and lower levels seen in the roots and etiolated buds. {ECO:0000269|PubMed:16813577}. locus:2150620; AT5G03940 signal recognition particle Os11g0153700 protein (Signal recognition particle 54 kDa protein, chloroplast, putative, expressed) (Signal recognition particle protein, putative) (cDNA clone:001-017-F02, full insert sequence),Os11g0153600 protein Q53QG1,A0A0P0XZ68 Q53QG1_ORYSJ,A0A0P0XZ68_ORYSJ LOC_Os11g05556 Os11g0153700 OsJ_33002 OSNPB_110153700,Os11g0153600 OSNPB_110153600 ENOG411DY1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Os11g0141550 protein,Os12g0138166 protein (Fragment) A0A0P0XYU0,A0A0P0Y6V0 A0A0P0XYU0_ORYSJ,A0A0P0Y6V0_ORYSJ Os11g0141550 OSNPB_110141550,Os12g0138166 OSNPB_120138166 ENOG411DY1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Expressed protein (Os03g0179700 protein) Q8H017 Q8H017_ORYSJ OSJNBa0050H14.13 Os03g0179700 LOC_Os03g08200 OsJ_09648 OSNPB_030179700 ENOG411DY1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411DY1T MWD9.11 Q9FMS0,F4K9U4 Q9FMS0_ARATH,F4K9U4_ARATH AT5g22320/MWD9_11 (Leucine-rich repeat (LRR) family protein),Leucine-rich repeat (LRR) family protein 50537,48864 AT5g22320/MWD9_11 (Leucine-rich repeat (LRR) family protein),Leucine-rich repeat (LRR) family protein locus:2176397; AT5G22320 Protein phosphatase 1 regulatory subunit Leucine-rich repeat family protein-like (Os01g0966400 protein) Q5JJV2 Q5JJV2_ORYSJ Os01g0966400 Os01g0966400 OsJ_04886 OSNPB_010966400 P0458E05.30 ENOG411DY1U ABI5 Q9SJN0,A0A1P8B106 ABI5_ARATH,A0A1P8B106_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 (Dc3 promoter-binding factor 1) (AtDPBF1) (Protein GROWTH-INSENSITIVITY TO ABA 1) (bZIP transcription factor 39) (AtbZIP39),Basic-leucine zipper (BZIP) transcription factor family protein DISRUPTION PHENOTYPE: Exhibits abscisic acid (ABA) insensitivity. {ECO:0000269|PubMed:10929936}. abscisic acid resistant reduced sensitivity to ABA inhibition of germination germinates in the presence of 3 microM ABA; does not exhibit compromised water relations normal stomatal regulation not wilty phenotype; seed dormancy similar to wt; reduced sensitivity to salt and osmotic stress during germination. Altered response to ABA-R. Finkelstein-2000 FUNCTION: Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence. {ECO:0000269|PubMed:11287670, ECO:0000269|PubMed:12000684, ECO:0000269|PubMed:12084834, ECO:0000269|PubMed:12177466, ECO:0000269|PubMed:12410810, ECO:0000269|PubMed:12434021, ECO:0000269|PubMed:15118859, ECO:0000269|PubMed:16247556, ECO:0000269|PubMed:16463099}. 47007,47498 Protein ABSCISIC ACID-INSENSITIVE 5 (Dc3 promoter-binding factor 1) (AtDPBF1) (Protein GROWTH-INSENSITIVITY TO ABA 1) (bZIP transcription factor 39) (AtbZIP39),Basic-leucine zipper (BZIP) transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of seed germination [GO:0010187]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to gibberellin [GO:0009739]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; seed development [GO:0048316]; seed germination [GO:0009845]; sugar mediated signaling pathway [GO:0010182]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737] DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:12084834}. TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:10760247, ECO:0000269|PubMed:12376636}. locus:2049425; AT2G36270 Protein ABSCISIC ACID-INSENSITIVE NA NA NA NA NA NA NA ENOG411DTU7 ACR2 F4JWR0,A0A1P8B9Q4,A0A1P8B9R3 ACR2_ARATH,A0A1P8B9Q4_ARATH,A0A1P8B9R3_ARATH ACT domain-containing protein ACR2 (Protein ACT DOMAIN REPEATS 2),ACT-like superfamily protein FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 56312,42616,51748 ACT domain-containing protein ACR2 (Protein ACT DOMAIN REPEATS 2),ACT-like superfamily protein locus:2145482; AT5G25320 ACT domain NA NA NA NA NA NA NA ENOG411DTU6 LHCA4 P27521 CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic (LHCI type III CAB-4) FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000269|PubMed:21806943}. MISCELLANEOUS: Light emission at 715-720 nm upon excitation at 440 and 475 nm, and subsequent transfer of excitation energy to the photosystem I core with a relative slow rate of 25 ns(-1). {ECO:0000269|PubMed:21806943}. 27734 Chlorophyll a-b binding protein 4, chloroplastic (LHCI type III CAB-4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to karrikin [GO:0080167]; response to low light intensity stimulus [GO:0009645] locus:2079117; AT3G47470 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic Q6YWJ7 Q6YWJ7_ORYSJ Os08g0435900 Os08g0435900 OsJ_27444 OSNPB_080435900 P0413H11.35 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DTU5 CPN60B4,Cpn60beta4 Q9C667,A0A1P8ATA4,A0A1P8ATB3 CPNB4_ARATH,A0A1P8ATA4_ARATH,A0A1P8ATB3_ARATH Chaperonin 60 subunit beta 4, chloroplastic (CPN-60 beta 4),TCP-1/cpn60 chaperonin family protein DISRUPTION PHENOTYPE: No visible phenotype besides impaired NDH activity. {ECO:0000269|PubMed:21483722}. FUNCTION: Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH). {ECO:0000269|PubMed:19224397, ECO:0000269|PubMed:21483722, ECO:0000269|Ref.5}. MISCELLANEOUS: CPN60B1, CPN60B2 or CPN60B3 cannot complement the function of CPN60B4.; MISCELLANEOUS: Assisted protein folding requires ATP hydrolysis, but not K(+) ions. Legionellosis (05134),RNA degradation (03018),Type I diabetes mellitus (04940),Tuberculosis (05152) 66796,60391,51115 Chaperonin 60 subunit beta 4, chloroplastic (CPN-60 beta 4),TCP-1/cpn60 chaperonin family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; protein folding [GO:0006457]; protein refolding [GO:0042026],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein refolding [GO:0042026] locus:2028751; AT1G26230 ruBisCO large subunit-binding protein subunit beta Os04g0443900 protein A0A0P0WAW0 A0A0P0WAW0_ORYSJ Os04g0443900 OSNPB_040443900 ENOG411DTU4 ACS7 Q9STR4 1A17_ARATH 1-aminocyclopropane-1-carboxylate synthase 7 (ACC synthase 7) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 7) Early flowering; Low ethylene levels-A. Theologis-2009 FUNCTION: 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. MISCELLANEOUS: The stability of ACS proteins, and the regulation of such stability, play a central role in ethylene biosynthesis. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 1/2. 4.4.1.14 50666 1-aminocyclopropane-1-carboxylate synthase 7 (ACC synthase 7) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 7) 1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; identical protein binding [GO:0042802]; pyridoxal phosphate binding [GO:0030170]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12968022}. locus:2136779; AT4G26200 1-aminocyclopropane-1-carboxylate synthase NA NA NA NA NA NA NA ENOG411DTU3 MDA7.1 Q0WSW1,Q8LES9,A0A1P8BGW5 Q0WSW1_ARATH,Q8LES9_ARATH,A0A1P8BGW5_ARATH RING/U-box superfamily protein (Uncharacterized protein At4g26580),RING/U-box superfamily protein 38346,39037,36165 RING/U-box superfamily protein (Uncharacterized protein At4g26580),RING/U-box superfamily protein integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021] locus:2133877;,locus:2161740; AT4G26580,AT5G55970 E3 ubiquitin-protein ligase Os01g0703300 protein (RING zinc finger protein-like) (cDNA clone:J013116I02, full insert sequence),Os01g0703300 protein (Fragment) Q8LR65,A0A0P0V750 Q8LR65_ORYSJ,A0A0P0V750_ORYSJ P0421H07.23-1 Os01g0703300 OsJ_03165 OSNPB_010703300,Os01g0703300 OSNPB_010703300 ENOG411DTU2 EMB2762 F4IMH3 F4IMH3_ARATH CCAAT-binding factor Embryo defective; Globular-D. Meinke-2007 R-ATH-6791226; 65348 CCAAT-binding factor membrane [GO:0016020]; Noc4p-Nop14p complex [GO:0030692]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; small-subunit processome [GO:0032040]; embryo development ending in seed dormancy [GO:0009793]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; rRNA processing [GO:0006364] locus:2059657; AT2G17250 nucleolar complex protein Os04g0585300 protein B9FC62 B9FC62_ORYSJ Os04g0585300 OsJ_15930 OSNPB_040585300 ENOG411DTU1 MBL20.10 Q8H0W4,Q8VYL0,A0A1P8B9X6,F4K2D8,F4K2D7 Q8H0W4_ARATH,Q8VYL0_ARATH,A0A1P8B9X6_ARATH,F4K2D8_ARATH,F4K2D7_ARATH AT3G11560 protein (LETM1-like protein) (Uncharacterized protein At3g11570),LETM1-like protein (Uncharacterized protein At3g11560),LETM1-like protein 97795,69679,98399,92407,101654 AT3G11560 protein (LETM1-like protein) (Uncharacterized protein At3g11570),LETM1-like protein (Uncharacterized protein At3g11560),LETM1-like protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021],chloroplast envelope [GO:0009941]; cellular metal ion homeostasis [GO:0006875] locus:2080752;,locus:2160757; AT3G11560,AT5G06220 LETM1-like protein Os08g0482100 protein (Fragment) Q0J4Y4,A0A0P0XH61 Q0J4Y4_ORYSJ,A0A0P0XH61_ORYSJ Os08g0482100 Os08g0482100 OSNPB_080482100,Os08g0482100 OSNPB_080482100 ENOG411DTU0 ENH1 Q9FFJ2,A8MSF2 Q9FFJ2_ARATH,A8MSF2_ARATH Rubredoxin family protein (Uncharacterized protein At5g17170),Rubredoxin family protein 28459,23888 Rubredoxin family protein (Uncharacterized protein At5g17170),Rubredoxin family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506] locus:2167150; AT5G17170 NA Os08g0162600 protein (cDNA clone:006-308-F09, full insert sequence) (cDNA clone:J023041B21, full insert sequence) Q84SC5 Q84SC5_ORYSJ P0577B11.138 OJ9990_A01.104 Os08g0162600 OsJ_26144 OSNPB_080162600 ENOG411DTU9 FAB1C,FAB1B,FAB1A Q9SSJ8,Q9LUM0,Q0WUR5,A0A1P8B5L8,A0A1P8B5M2,F4JW00,F4JW01 FAB1C_ARATH,FAB1B_ARATH,FAB1A_ARATH,A0A1P8B5L8_ARATH,A0A1P8B5M2_ARATH,F4JW00_ARATH,F4JW01_ARATH Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1C),1-phosphatidylinositol-3-phosphate 5-kinase FAB1B (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (FYVE finger-containing phosphoinositide kinase) (PIKfyve) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1B),1-phosphatidylinositol-3-phosphate 5-kinase FAB1A (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (FYVE finger-containing phosphoinositide kinase) (PIKfyve) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1A),1-phosphatidylinositol-3-phosphate 5-kinase FAB1A DISRUPTION PHENOTYPE: Leaf-curling phenotype. Root growth inhibition, root gravitropic response, and hyposensitivity to exogenous auxin. Fab1a and fab1b double mutant displays an abnormal vacuolar phenotype late in pollen development leading to inviable pollen (PubMed:19846542). {ECO:0000269|PubMed:19846542, ECO:0000269|PubMed:21173023, ECO:0000269|PubMed:21412048}. Curled leaves-J. Doughty-2009 FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Catalyzes the phosphorylation of phosphatidylinositol 3-phosphate on the fifth hydroxyl of the myo-inositol ring, to form phosphatidylinositol 3,5-bisphosphate (By similarity). {ECO:0000250}.,FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Catalyzes the phosphorylation of phosphatidylinositol 3-phosphate on the fifth hydroxyl of the myo-inositol ring, to form phosphatidylinositol 3,5-bisphosphate (By similarity). Plays an important role in maintenance of endomembrane homeostasis including endocytosis, vacuole formation, and vacuolar acidification processes. Required for development of viable pollen. Might mediate recycling of auxin transporters. {ECO:0000250, ECO:0000269|PubMed:19846542, ECO:0000269|PubMed:21173023, ECO:0000269|PubMed:21412048}. ARA:AT1G71010-MONOMER;,ARA:AT3G14270-MONOMER;,ARA:AT4G33240-MONOMER; R-ATH-1660514;R-ATH-1660516;R-ATH-1660517; Inositol phosphate metabolism (00562),Regulation of actin cytoskeleton (04810),Phosphatidylinositol signaling system (04070),Phagosome (04145) 2.7.1.150 185494,200831,196193,195961,191904,196106,195749 Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1C),1-phosphatidylinositol-3-phosphate 5-kinase FAB1B (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (FYVE finger-containing phosphoinositide kinase) (PIKfyve) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1B),1-phosphatidylinositol-3-phosphate 5-kinase FAB1A (Phosphatidylinositol 3-phosphate 5-kinase) (EC 2.7.1.150) (FYVE finger-containing phosphoinositide kinase) (PIKfyve) (Phosphatidylinositol 3-phosphate 5-kinase type III) (PIPkin-III) (Type III PIP kinase) (Protein FORMS APLOID AND BINUCLEATE CELLS 1A),1-phosphatidylinositol-3-phosphate 5-kinase FAB1A cytosol [GO:0005829]; endosome membrane [GO:0010008]; 1-phosphatidylinositol-3-phosphate 5-kinase activity [GO:0000285]; ATP binding [GO:0005524]; retrograde transport, endosome to Golgi [GO:0042147]; stomatal closure [GO:0090332],cytosol [GO:0005829]; endosome [GO:0005768]; endosome membrane [GO:0010008]; mitochondrion [GO:0005739]; 1-phosphatidylinositol-3-phosphate 5-kinase activity [GO:0000285]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; endomembrane system organization [GO:0010256]; pollen development [GO:0009555]; retrograde transport, endosome to Golgi [GO:0042147]; stomatal closure [GO:0090332]; vacuole organization [GO:0007033],cytosol [GO:0005829]; endosome [GO:0005768]; endosome membrane [GO:0010008]; 1-phosphatidylinositol-3-phosphate 5-kinase activity [GO:0000285]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; endomembrane system organization [GO:0010256]; retrograde transport, endosome to Golgi [GO:0042147]; vacuole organization [GO:0007033],ATP binding [GO:0005524]; metal ion binding [GO:0046872]; phosphatidylinositol phosphate kinase activity [GO:0016307] TISSUE SPECIFICITY: Ubiquitous with highest expression levels in the root hair zone, pollen, and stamens. {ECO:0000269|PubMed:19846542}.,TISSUE SPECIFICITY: Ubiquitous with highest expression levels in pollen, seed, and senescent leaves. {ECO:0000269|PubMed:19846542}. locus:2013965;,locus:2091050;,locus:2125884; AT1G71010,AT3G14270,AT4G33240 Phosphatidylinositol-4-phosphate 5-kinase family protein FYVE finger-containing phosphoinositide kinase-like (Os08g0428900 protein),Os08g0450800 protein (Fragment),Os08g0450700 protein (Fragment),Os09g0402300 protein (Fragment),Os06g0259000 protein (Fragment),Os03g0399532 protein Q8H3L8,Q0J5A8,Q0J5A9,Q0J1X6,A0A0P0WUT7,A0A0P0VZA5,A0A0P0XGU8 Q8H3L8_ORYSJ,Q0J5A8_ORYSJ,Q0J5A9_ORYSJ,Q0J1X6_ORYSJ,A0A0P0WUT7_ORYSJ,A0A0P0VZA5_ORYSJ,A0A0P0XGU8_ORYSJ P0479C08.109 Os08g0428900 OSNPB_080428900,Os08g0450800 Os08g0450800 OSNPB_080450800,Os08g0450700 Os08g0450700 OSNPB_080450700,Os09g0402300 OSNPB_090402300,Os06g0259000 OSNPB_060259000,Os03g0399532 OSNPB_030399532,Os08g0450800 OSNPB_080450800 ENOG411DTU8 NAS3,NAS4 O80483,Q9C7X5,F4JUZ6 NAS3_ARATH,NAS4_ARATH,F4JUZ6_ARATH Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 3) (AtNAS3),Probable nicotianamine synthase 4 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 4),Nicotianamine synthase FUNCTION: Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.,FUNCTION: Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron. {ECO:0000250}. ARA:AT1G09240-MONOMER;,ARA:AT1G56430-MONOMER; 2.5.1.43; 2.5.1.43 35751,36352,9742 Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 3) (AtNAS3),Probable nicotianamine synthase 4 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 4),Nicotianamine synthase nicotianamine synthase activity [GO:0030410]; nicotianamine biosynthetic process [GO:0030418]; phloem transport [GO:0010233]; pollen development [GO:0009555]; pollen tube growth [GO:0009860],nicotianamine synthase activity [GO:0030410]; nicotianamine biosynthetic process [GO:0030418] TISSUE SPECIFICITY: In shoots. locus:2195301;,locus:2010718;,locus:6530298217; AT1G09240,AT1G56430,AT4G26483 as a sensor for the physiological iron status within the plant and or might be involved in the transport of iron Nicotianamine synthase 2 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 2) (OsNAS2),Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 3) (OsNAS3),Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 1) (OsNAS1) Q10MI9,Q0D3F2,Q0DSH9 NAS2_ORYSJ,NAS3_ORYSJ,NAS1_ORYSJ NAS2 Os03g0307200 LOC_Os03g19420 OsJ_010144,NAS3 Os07g0689600 LOC_Os07g48980 OJ1165_F02.29 OsJ_024648 P0597G07.112,NAS1 Os03g0307300 LOC_Os03g19427 FUNCTION: Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron. {ECO:0000269|PubMed:14617093}. ENOG411DTUW Q8VZI6,F4JIX3 Q8VZI6_ARATH,F4JIX3_ARATH AT4g33380/F17M5_140 (Dimethylallyl, adenosine tRNA methylthiotransferase),Dimethylallyl, adenosine tRNA methylthiotransferase 37230,37003 AT4g33380/F17M5_140 (Dimethylallyl, adenosine tRNA methylthiotransferase),Dimethylallyl, adenosine tRNA methylthiotransferase Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity [GO:0016740],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2119191; AT4G33380 NA Os06g0214100 protein,Os02g0761600 protein (cDNA clone:J013119O06, full insert sequence) Q69Y23,Q6Z6H3 Q69Y23_ORYSJ,Q6Z6H3_ORYSJ Os06g0214100 Os06g0214100 OSNPB_060214100 P0537F07.7 P0701E03.46,Os02g0761600 Os02g0761600 OsJ_08476 OSNPB_020761600 P0486G03.7 ENOG411DTUV Q9C881 Q9C881_ARATH Beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604) (Glycosyltransferase) (Uncharacterized protein T16O9.11) 61666 Beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604) (Glycosyltransferase) (Uncharacterized protein T16O9.11) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2196673; AT1G33250 Protein of unknown function DUF604 Os10g0516600 protein,Os10g0516701 protein A0A0N7KS29,A0A0P0XX76 A0A0N7KS29_ORYSJ,A0A0P0XX76_ORYSJ Os10g0516600 OSNPB_100516600,Os10g0516701 OSNPB_100516701 ENOG411DTUU NIT4 P46011,A0A1P8BBX1 NRL4_ARATH,A0A1P8BBX1_ARATH Bifunctional nitrilase/nitrile hydratase NIT4 (EC 3.5.5.1) (EC 3.5.5.4) (EC 4.2.1.65) (Cyanoalanine nitrilase) (Nitrilase 4),Nitrilase 4 FUNCTION: Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN) or allylcyanide and no activity with indole-3-acetonitrile. Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:11060302}. 3.5.5.1; 3.5.5.4; 4.2.1.65 38895,29061 Bifunctional nitrilase/nitrile hydratase NIT4 (EC 3.5.5.1) (EC 3.5.5.4) (EC 4.2.1.65) (Cyanoalanine nitrilase) (Nitrilase 4),Nitrilase 4 plasma membrane [GO:0005886]; 3-cyanoalanine hydratase activity [GO:0047558]; cyanoalanine nitrilase activity [GO:0047427]; indole-3-acetonitrile nitrilase activity [GO:0080061]; nitrilase activity [GO:0000257]; nitrile hydratase activity [GO:0018822]; cyanide metabolic process [GO:0019499]; detoxification of nitrogen compound [GO:0051410],hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810]; nitrogen compound metabolic process [GO:0006807] locus:2176377; AT5G22300 Bifunctional nitrilase nitrile hydratase Bifunctional nitrilase/nitrile hydratase NIT4 (OsNIT4) (EC 3.5.5.1) (EC 3.5.5.4) (Cyanoalanine nitrilase) (Nitrilase 4) Q6H849 NRL4_ORYSJ NIT4 Os02g0635200 LOC_Os02g42350 OJ1626_B09.8 OsJ_007404 FUNCTION: Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification (By similarity). {ECO:0000250}. ENOG411DTUT INDH O49472 O49472_ARATH ATP binding protein-like (INDH1(Iron-sulfur protein required for NADH dehydrogenase)) R-ATH-6799198; 33426 ATP binding protein-like (INDH1(Iron-sulfur protein required for NADH dehydrogenase)) mitochondrion [GO:0005739] locus:2122995; AT4G19540 Iron-sulfur protein Os03g0627300 protein (Fragment) A0A0P0W0G1 A0A0P0W0G1_ORYSJ Os03g0627300 OSNPB_030627300 ENOG411DTUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411DTUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein Q69SA2,A0A0P0X6U6,A0A0P0X714 Q69SA2_ORYSJ,A0A0P0X6U6_ORYSJ,A0A0P0X714_ORYSJ Os07g0525100 OsJ_24509 OSJNBb0052O11.121 OSNPB_070525100 P0678G09.13,Os07g0527000 OSNPB_070527000,Os07g0527300 OSNPB_070527300 ENOG411DTUZ GAUT1 Q9LE59 GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase (EC 2.4.1.43) (Alpha-1,4-galacturonosyltransferase 1) (Galacturonosyltransferase 1) (Like glycosyl transferase 1) FUNCTION: Involved in pectin biosynthesis. Catalyzes the transfer of galacturonic acid from uridine 5'-diphosphogalacturonic acid onto the pectic polysaccharide homogalacturonan. {ECO:0000269|PubMed:16540543}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.43; 2.4.1.43 77373 Polygalacturonate 4-alpha-galacturonosyltransferase (EC 2.4.1.43) (Alpha-1,4-galacturonosyltransferase 1) (Galacturonosyltransferase 1) (Like glycosyl transferase 1) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; homogalacturonan biosynthetic process [GO:0010289] TISSUE SPECIFICITY: Expressed in seedlings, inflorescences, flowers, siliques, pollen, roots, stems and leaves. {ECO:0000269|PubMed:10809443, ECO:0000269|PubMed:16540543, ECO:0000269|PubMed:19825675}. locus:2098836; AT3G61130 Alpha-14-galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) (Fragment) Q652K2,Q0J045 Q652K2_ORYSJ,Q0J045_ORYSJ Os09g0531900 Os09g0531900 OJ1254_E07.22 OsJ_30110 OSNPB_090531900 P0515E01.7,Os09g0531800 OSNPB_090531800 ENOG411DTUY KAN1 Q93WJ9 KAN1_ARATH Transcription repressor KAN1 (Protein KANADI 1) DISRUPTION PHENOTYPE: Flat leaves. Altered morphology of abaxial mesophyll cells. Decreased number of trichomes on the adaxial surface and increased number of abaxial trichomes. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739}. About nine-tenths of the mutants exhibited abaxialized vasculature. The exclusively adaxialized vasculature observed in kan1 kan2 petioles was not detected in bop1 bop2 kan1 kan2 petioles. The radialized portion of bop1 bop2 kan1 kan2 leaves showed various kinds of organ polarity defects. The vascular bundles of nearly half of the leaves (44.0%) consisted of phloem surrounded by xylem while one-third (36.0%) displayed xylem surrounded by phloem and a small percentage (16.0%) had a mixture of both types of vasculature.,Quadruple mutant plants developed narrow leaves with ectopic blade outgrowth along the petioles like bop1 bop2 leaves as well as ectopic outgrowths on their abaxial lamina like kan1 kan2 leaves. However all of the bop1 bop2 kan1 kan2 leaves also showed extended radialized petiole development that was not observed in either parental genotype.,bop1 bop2 kan1 kan2 stems had a decreased ratio of adaxialized vascular phenotypes compared with kan1 kan2 stems. Similar to what was observed in petioles 6.7% of bop1 bop2 kan1 kan2 stems exhibited an abaxialized phenotype of xylem surrounded by phloem while others (13.3%) had both types of vasculature in a single stem.,Ectopic adaxial tissues are restricted to the medial domain of the carpels normally occupied by the abaxial replum. Formation of external ovule-bearing placentae.,Similar to kan1 kan2 double mutant. However the ovules have a novel phenotype forming a single amorphous structure in place of both integuments.,A few external ovules develop at the base of the gynoecium and straps of ectopic style from along the abaxial replum. Phenotype is present primarily in the first formed carpels.,All kan1 kan2 stem vascular bundles displayed phloem surrounded by xylem indicating adaxialized polarity.,Cotyledons are narrow cup-shaped and point upward. Leaves are narrow dark green and develop ectopic outgrowths on their abaxial side only. Four to six stipules rather than two develop at the base of each leaf surrounding its entire circumference. Stems fail to elongate upon flowering. Floral organ morphology is highly abnormal. Mature ovules have reduced outer integuments. Aberrant positioning of cell types primarily along the adaxial/abaxial lateral organ axis.,Double mutant plants have narrow leaves and developed ectopic outgrowths on their abaxial lamina.,External structures of the carpel are largely absent. Ovules arise from a surface or column of tissue at the center of the flower. The inner integuments of these ovules are normal but the asymmetrical outer integument is now a nearly symmetrical and relatively amorphous collar of tissue.,The vasculature in more than half (55.9%) of kan1 kan2 leaf petioles exhibited a pattern of phloem surrounded by xylem representing an adaxialized phenotype. However very surprisingly 17.6% of kan1 kan2 leaf petioles had abaxialized vasculature or a mixture of adaxialized and abaxialized vasculature. Cupped first true leaves; Rolled leaves that become flat over time; Abnormal pistil development; Ectopic ovules on outside of carpels; Abnormal trichome patterning-S. Poethig-2001 FUNCTION: Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}. MISCELLANEOUS: Plants overexpressing KAN1 develop elongated and pointed cotyledons and do not produced subsequent leaves, resulting in seedling lethality. 45845 Transcription repressor KAN1 (Protein KANADI 1) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abaxial cell fate specification [GO:0010158]; adaxial/abaxial axis specification [GO:0009943]; carpel development [GO:0048440]; plant organ morphogenesis [GO:1905392]; plant ovule development [GO:0048481]; polarity specification of adaxial/abaxial axis [GO:0009944]; radial pattern formation [GO:0009956]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051] DEVELOPMENTAL STAGE: In globular embryos, expressed in the peripheral cells in a basal region above the hypophysis. In heart-stage embryos, expressed in the periphery of the presumptive hypocotyl and on the abaxial side of cotyledon primordia. During vegetative growth, expressed the abaxial side of very young leaf primordia. Expressed on the abaxial side of carpel primordia and then in a localized region on the abaxial margin that gives rise to the septum. Later, expressed in the tissue that gives rise to ovules. {ECO:0000269|PubMed:11525739}. TISSUE SPECIFICITY: Expressed in developing phloem and lateral root. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295}. locus:2171427; AT5G16560 transcription Probable transcription factor RL9 (Protein ROLLED LEAF 9),Os09g0395300 protein Q0J235,A0A0N7KQR2 ROLL9_ORYSJ,A0A0N7KQR2_ORYSJ RL9 Os09g0395300 LOC_Os09g23200 B1040D06.24,Os09g0395300 OSNPB_090395300 DISRUPTION PHENOTYPE: Rolled inward leaves like a cylinder at mature stage. Malformed spikelets with low seed sets. Slight delay in heading date. Disordered and irregular arrangement of chloroplast grana lamellae. {ECO:0000269|PubMed:18594992}. FUNCTION: Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. ENOG411DTUG RPL23A; RPL23B; RPL23C,emb2171 P49690,F4J3P1 RL23_ARATH,F4J3P1_ARATH 60S ribosomal protein L23 (Protein EMBRYO DEFECTIVE 2171),Ribosomal protein L14p/L23e family protein Embryo defective; Globular-D. Meinke-2002 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15027,13406 60S ribosomal protein L23 (Protein EMBRYO DEFECTIVE 2171),Ribosomal protein L14p/L23e family protein cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2018309;locus:2051119;locus:2100915; AT1G04480AT2G33370;AT3G04400;,AT3G04400 ribosomal protein 60S ribosomal protein L17 (60S ribosomal protein L23, putative, expressed) (Os02g0814700 protein) (Os03g0139100 protein) (Os10g0466700 protein) (cDNA clone:J013057L24, full insert sequence),Os03g0139100 protein (Fragment),Os02g0814700 protein (Fragment) Q9AV77,A0A0N7KGJ7,A0A0P0VRI0 Q9AV77_ORYSJ,A0A0N7KGJ7_ORYSJ,A0A0P0VRI0_ORYSJ OSJNBa0006L06.7 LOC_Os03g04590 LOC_Os10g32920 Os02g0814700 Os03g0139100 Os10g0466700 OJ1293_E04.23 OsJ_08852 OsJ_31833 OSNPB_100466700,Os03g0139100 OSNPB_030139100,Os02g0814700 OSNPB_020814700 ENOG411DTUF T32B20.g Q9LKU3 Q9LKU3_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T32B20.g) R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-72163; 107051 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T32B20.g) catalytic step 1 spliceosome [GO:0071012]; catalytic step 2 spliceosome [GO:0071013]; post-mRNA release spliceosomal complex [GO:0071014]; prespliceosome [GO:0071010]; Prp19 complex [GO:0000974]; generation of catalytic spliceosome for first transesterification step [GO:0000349] locus:2184236; AT5G28740 pre-mRNA-splicing factor Os01g0686600 protein,Os07g0644300 protein (Putative adapter protein ATH-55) (cDNA clone:J013074K22, full insert sequence) (cDNA clone:J033041F21, full insert sequence),Os05g0431266 protein (Fragment) Q0JKA6,Q8LIB1,A0A0P0WMP2 Q0JKA6_ORYSJ,Q8LIB1_ORYSJ,A0A0P0WMP2_ORYSJ Os01g0686600 Os01g0686600 OSNPB_010686600,OJ1458_B07.103 OJ1003_C06.135 Os07g0644300 OSNPB_070644300,Os05g0431266 OSNPB_050431266 ENOG411DTUE A0A1P8B1A2,F4IHL4 A0A1P8B1A2_ARATH,F4IHL4_ARATH ArgH (DUF639) 83905,83605 ArgH (DUF639) integral component of membrane [GO:0016021] locus:2049314; AT2G21720 Plant protein of unknown function (DUF639) Os03g0157700 protein,Expressed protein (Os03g0157700 protein) (cDNA clone:002-100-D05, full insert sequence) Q0DV08,Q8LMQ8 Q0DV08_ORYSJ,Q8LMQ8_ORYSJ Os03g0157700 Os03g0157700 OSNPB_030157700,Os03g0157700 OJ1134F05.2 LOC_Os03g06180 OsJ_09468 OSJNBa0011L14.3 OSNPB_030157700 ENOG411DTUD O04212 Y2090_ARATH Putative ABC1 protein At2g40090 60919 Putative ABC1 protein At2g40090 transporter activity [GO:0005215] locus:2047746; AT2G40090 ABC1 protein Os03g0698350 protein A0A0P0W280 A0A0P0W280_ORYSJ Os03g0698350 OSNPB_030698350 ENOG411DTUC RLP29 Q9SJH6 Q9SJH6_ARATH At2g42800 (Receptor like protein 29) (Uncharacterized protein At2g42800) 50801 At2g42800 (Receptor like protein 29) (Uncharacterized protein At2g42800) anchored component of membrane [GO:0031225]; plant-type cell wall [GO:0009505] locus:2052367; AT2G42800 Retrotransposon protein Os03g0644700 protein (Fragment) A0A0P0W0R1 A0A0P0W0R1_ORYSJ Os03g0644700 OSNPB_030644700 ENOG411DTUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Nse4 Os06g0618000 protein (cDNA clone:002-172-E01, full insert sequence) Q69XQ4 Q69XQ4_ORYSJ Os06g0618000 Os06g0618000 OsJ_21978 OSNPB_060618000 P0012B02.6 ENOG411DTUN ANGULATA 10 Q84TH8,Q9SHP4 Q84TH8_ARATH,Q9SHP4_ARATH Deneddylase (Uncharacterized protein At1g28530),Deneddylase (F1K23.23) 68457,68329 Deneddylase (Uncharacterized protein At1g28530),Deneddylase (F1K23.23) chloroplast [GO:0009507]; granum assembly [GO:0090391]; palisade mesophyll development [GO:1903866]; thylakoid membrane organization [GO:0010027] locus:2018728; AT1G28530 NA Os02g0109900 protein Q6Z900 Q6Z900_ORYSJ Os02g0109900 OsJ_05057 OSNPB_020109900 P0501G04.5 ENOG411DTUM SAC7,SAC6 Q9C5G5,Q7X911 SAC7_ARATH,SAC6_ARATH Phosphoinositide phosphatase SAC7 (AtSAC7) (EC 3.1.3.-) (Protein ROOT HAIR DEFECTIVE 4) (Protein SUPPRESSOR OF ACTIN 1C) (AtSAC1c) (Protein SUPPRESSOR OF ACTIN 7) (SAC domain protein 7) (SAC1-like protein AtSAC1c),Phosphoinositide phosphatase SAC6 (AtSAC6) (EC 3.1.3.-) (Protein IMPAIRED IN BABA-INDUCED STERILITY 2) (Protein SUPPRESSOR OF ACTIN 1B) (AtSAC1b) (Protein SUPPRESSOR OF ACTIN 6) (SAC domain protein 6) (SAC1-like protein AtSAC1b) DISRUPTION PHENOTYPE: Short, bulged and branched root hairs. Accumulates elevated levels of PtdIns(4)P in roots. {ECO:0000269|PubMed:18281508}.,DISRUPTION PHENOTYPE: Impaired in BABA-induced sterility (ibs) and BABA-induced protection against P.syringae, H.parasitica, and salt. Affected in the priming for callose deposition. {ECO:0000269|PubMed:15722464}. Short root hairs with randomly formed bulges-E. Neilsen-2008 FUNCTION: Phosphoinositide phosphatase that preferentially hydrolyzes PtdIns(4)P. Regulates the accumulation of PtdIns(4)P on membrane compartments at the tips of growing root hairs leading to proper root hair development. {ECO:0000269|PubMed:12713536, ECO:0000269|PubMed:18281508, ECO:0000269|Ref.7}.,FUNCTION: Phosphoinositide phosphatase that hydrolyzes PtdIns(3)P and PtdIns(4)P. Involved in priming for different defense responses. {ECO:0000269|PubMed:12713536, ECO:0000269|PubMed:15722464}. ARA:AT3G51460-MONOMER;,ARA:AT5G66020-MONOMER; R-ATH-1483248;R-ATH-1660514; 3.1.3.66;3.1.3.B4; 3.1.3.- 68237,67626 Phosphoinositide phosphatase SAC7 (AtSAC7) (EC 3.1.3.-) (Protein ROOT HAIR DEFECTIVE 4) (Protein SUPPRESSOR OF ACTIN 1C) (AtSAC1c) (Protein SUPPRESSOR OF ACTIN 7) (SAC domain protein 7) (SAC1-like protein AtSAC1c),Phosphoinositide phosphatase SAC6 (AtSAC6) (EC 3.1.3.-) (Protein IMPAIRED IN BABA-INDUCED STERILITY 2) (Protein SUPPRESSOR OF ACTIN 1B) (AtSAC1b) (Protein SUPPRESSOR OF ACTIN 6) (SAC domain protein 6) (SAC1-like protein AtSAC1b) cytoplasmic vesicle membrane [GO:0030659]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasma membrane of cell tip [GO:0031520]; plasmodesma [GO:0009506]; pollen tube tip [GO:0090404]; root hair tip [GO:0035619]; phosphatidylinositol-4-phosphate phosphatase activity [GO:0043812]; response to wounding [GO:0009611]; root hair cell tip growth [GO:0048768],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; phosphatidylinositol phosphate phosphatase activity [GO:0052866]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12713536, ECO:0000269|PubMed:12805586}.,TISSUE SPECIFICITY: Predominantly expressed in flowers. {ECO:0000269|PubMed:12713536, ECO:0000269|PubMed:12805586}. locus:2081780;,locus:2156907; AT3G51460,AT5G66020 phosphatase Inositol 5-phosphatase 3-like protein (Os02g0554300 protein),Os11g0309000 protein (SacIy domain containing protein, expressed) Q69SU0,Q0IT47 Q69SU0_ORYSJ,Q0IT47_ORYSJ Os02g0554300 OsJ_07119 OSNPB_020554300 P0470G10.17,Os11g0309000 LOC_Os11g20384 Os11g0309000 OSNPB_110309000 ENOG411DTUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0159500 protein,Os05g0159300 protein (Fragment) A0A0P0WIE4,A0A0P0WIE0 A0A0P0WIE4_ORYSJ,A0A0P0WIE0_ORYSJ Os05g0159500 OSNPB_050159500,Os05g0159300 OSNPB_050159300 ENOG411DTUI Q67ZI9,Q9SJB4,Q8VY93 GDL48_ARATH,GDL34_ARATH,GDL66_ARATH GDSL esterase/lipase At2g42990 (EC 3.1.1.-) (Extracellular lipase At2g42990),GDSL esterase/lipase At2g04570 (EC 3.1.1.-) (Extracellular lipase At2g04570),GDSL esterase/lipase At4g26790 (EC 3.1.1.-) (Extracellular lipase At4g26790) ARA:AT2G42990-MONOMER;,ARA:AT2G04570-MONOMER;,ARA:AT4G26790-MONOMER; 3.1.1.- 39200,38478,39760 GDSL esterase/lipase At2g42990 (EC 3.1.1.-) (Extracellular lipase At2g42990),GDSL esterase/lipase At2g04570 (EC 3.1.1.-) (Extracellular lipase At2g04570),GDSL esterase/lipase At4g26790 (EC 3.1.1.-) (Extracellular lipase At4g26790) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2045610;,locus:2058309;,locus:2116282; AT2G42990,AT2G04570,AT4G26790 GDSL esterase lipase Os02g0189300 protein (Putative Anter-specific proline-rich protein APG) (cDNA clone:001-030-C02, full insert sequence),Anter-specific proline-rich protein APG-like (Os06g0636700 protein),GDSL-motif lipase/hydrolase-like (Os09g0132900 protein) (cDNA clone:006-203-G04, full insert sequence),GDSL-motif lipase/hydrolase-like (Os09g0132900 protein),Os02g0189200 protein (Putative Anter-specific proline-rich protein APG) (cDNA clone:002-145-C12, full insert sequence),Os04g0547800 protein (Fragment),Os12g0563300 protein (Fragment),Os03g0831625 protein,Os03g0158100 protein Q6YUV1,Q67WG1,Q6K449,Q6K450,Q6YUV2,A0A0P0WDB5,A0A0P0YBJ9,A0A0P0W521,A0A0P0VTC7 Q6YUV1_ORYSJ,Q67WG1_ORYSJ,Q6K449_ORYSJ,Q6K450_ORYSJ,Q6YUV2_ORYSJ,A0A0P0WDB5_ORYSJ,A0A0P0YBJ9_ORYSJ,A0A0P0W521_ORYSJ,A0A0P0VTC7_ORYSJ Os02g0189300 Os02g0189300 OJ1145_F01.27 OSJNBb0031B09.6 OSNPB_020189300,Os06g0636700 Os06g0636700 OSNPB_060636700 P0523F01.2,P0406E03.14-2 Os09g0132900 OsJ_28453 OSJNBa0095O23.40-2 OSNPB_090132900,P0406E03.14-1 Os09g0132900 OSJNBa0095O23.40-1 OSNPB_090132900,Os02g0189200 OJ1145_F01.26 OsJ_05687 OSJNBb0031B09.5 OSNPB_020189200,Os04g0547800 OSNPB_040547800,Os12g0563300 OSNPB_120563300,Os03g0831625 OSNPB_030831625,Os03g0158100 OSNPB_030158100 ENOG411DTUH F4JLM5,F4J2W0 SYIC_ARATH,F4J2W0_ARATH Isoleucine--tRNA ligase, cytoplasmic (EC 6.1.1.5) (Isoleucyl-tRNA synthetase) (IleRS),ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein 6.1.1.5 135484,17680 Isoleucine--tRNA ligase, cytoplasmic (EC 6.1.1.5) (Isoleucyl-tRNA synthetase) (IleRS),ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; isoleucine-tRNA ligase activity [GO:0004822]; tRNA binding [GO:0000049]; isoleucyl-tRNA aminoacylation [GO:0006428]; response to cadmium ion [GO:0046686],cytoplasm [GO:0005737]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; isoleucine-tRNA ligase activity [GO:0004822]; isoleucyl-tRNA aminoacylation [GO:0006428] locus:2122764;,locus:2829295; AT4G10320,AT3G23145 Isoleucyl-tRNA synthetase Os06g0645400 protein (Putative isoleucine-tRNA ligase),Isoleucyl-tRNA synthetase-like (Os06g0645400 protein),Os02g0183900 protein Q67WM2,Q67WM1,A0A0P0VFN6 Q67WM2_ORYSJ,Q67WM1_ORYSJ,A0A0P0VFN6_ORYSJ P0017B12.25-1 Os06g0645400 OSNPB_060645400,P0017B12.25-2 Os06g0645400 OSNPB_060645400,Os02g0183900 OSNPB_020183900 ENOG411E5UA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os06g0304200 protein A0A0P0WVN1 A0A0P0WVN1_ORYSJ Os06g0304200 OSNPB_060304200 ENOG411E5UC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0133500 protein Q9FPB9 Q9FPB9_ORYSJ 134P10.9b Os06g0133500 OsJ_20017 OSNPB_060133500 P0679C08.32 ENOG411EE15 CRK19,CRK5,CRK4,CRK20,CRK23 Q8GWJ7,Q9C5S8,Q9LZU4,O65479,A0A1P8B7Y9,A0A1P8B944,A0A1P8B3T1,A0A1P8B3T4,A0A1P8B6F3 CRK19_ARATH,CRK5_ARATH,CRK4_ARATH,CRK20_ARATH,A0A1P8B7Y9_ARATH,A0A1P8B944_ARATH,A0A1P8B3T1_ARATH,A0A1P8B3T4_ARATH,A0A1P8B6F3_ARATH Cysteine-rich receptor-like protein kinase 19 (Cysteine-rich RLK19) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 5 (Cysteine-rich RLK5) (EC 2.7.11.-) (Receptor-like protein kinase 6),Cysteine-rich receptor-like protein kinase 4 (Cysteine-rich RLK4) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 20 (Cysteine-rich RLK20) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 19,Cysteine-rich RLK (RECEPTOR-like protein kinase) 5,Cysteine-rich RLK (RECEPTOR-like protein kinase) 20,Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 FUNCTION: Involved in multiple distinct defense responses. May function as a disease resistance (R) protein. {ECO:0000269|PubMed:14756307, ECO:0000269|PubMed:15604743}. 2.7.11.- 71620,73402,75923,74058,71961,63881,68185,73854,87878 Cysteine-rich receptor-like protein kinase 19 (Cysteine-rich RLK19) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 5 (Cysteine-rich RLK5) (EC 2.7.11.-) (Receptor-like protein kinase 6),Cysteine-rich receptor-like protein kinase 4 (Cysteine-rich RLK4) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 20 (Cysteine-rich RLK20) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 19,Cysteine-rich RLK (RECEPTOR-like protein kinase) 5,Cysteine-rich RLK (RECEPTOR-like protein kinase) 20,Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468]; response to salicylic acid [GO:0009751],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; programmed cell death [GO:0012501]; protein phosphorylation [GO:0006468]; response to salicylic acid [GO:0009751],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2121686;,locus:2121611;,locus:2077147; AT4G23270,AT4G23130,AT3G45860,AT4G23280 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E8KT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9Z5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dipeptidyl peptidase IV (DPP IV) N-terminal region NA NA NA NA NA NA NA ENOG411E9Z6 F4J1E9 F4J1E9_ARATH F-box associated ubiquitination effector protein 11363 F-box associated ubiquitination effector protein locus:2093477; AT3G16020 F-box associated NA NA NA NA NA NA NA ENOG411DZGM O80607 O80607_ARATH Mucin-like protein (Predicted by genscan) (Uncharacterized protein At2g02880) (Uncharacterized protein At2g02880/T17M13.5) 35964 Mucin-like protein (Predicted by genscan) (Uncharacterized protein At2g02880) (Uncharacterized protein At2g02880/T17M13.5) locus:2056720; AT2G02880 NA Expressed protein (Os03g0379400 protein) (Putative mucin) Q8W398 Q8W398_ORYSJ Os03g0379400 LOC_Os03g26220 OSJNBa0013O08.2 OSNPB_030379400 ENOG411DZGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0228800 protein (cDNA clone:J013042E14, full insert sequence),Os01g0228800 protein (Fragment) Q0JPD3,A0A0P0V0I4 Q0JPD3_ORYSJ,A0A0P0V0I4_ORYSJ Os01g0228800 Os01g0228800 OSNPB_010228800,Os01g0228800 OSNPB_010228800 ENOG411DZGF CHLG Q38833 CHLG_ARATH Chlorophyll synthase, chloroplastic (EC 2.5.1.62) (Polyprenyl transferase) (Protein G4) (AtG4) Pale green seeds and seedlings-D. Meinke-2008 FUNCTION: Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a or b with a preference for geranylgeranyldiphosphate (GGPP) rather than for phytyldiphosphate (PhyPP). {ECO:0000269|Ref.5}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT3G51820-MONOMER;MetaCyc:AT3G51820-MONOMER; 2.5.1.62 41881 Chlorophyll synthase, chloroplastic (EC 2.5.1.62) (Polyprenyl transferase) (Protein G4) (AtG4) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021]; chlorophyll synthetase activity [GO:0046408]; chlorophyll biosynthetic process [GO:0015995] TISSUE SPECIFICITY: Low level in flower buds, flowers, stems, leaves, greening cotyledons and immature siliques, but not in mature siliques or seeds. {ECO:0000269|PubMed:8552034}. locus:2074393; AT3G51820 Chlorophyll synthase Chlorophyll synthase, chloroplastic (EC 2.5.1.62) (Polyprenyl transferase),Os05g0349700 protein (Fragment) Q5W6H5,A0A0P0WL08 CHLG_ORYSJ,A0A0P0WL08_ORYSJ CHLG Os05g0349700 LOC_Os05g28200 OsJ_18166 OSJNBa0077J17.3,Os05g0349700 OSNPB_050349700 FUNCTION: Involved in one of the last steps of the biosynthesis of chlorophyll a. ENOG411DZGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) EL5-like (Os06g0534800 protein) Q5Z5G0 Q5Z5G0_ORYSJ Os06g0534800 OsJ_21572 OSJNBa0001B21.13 OSNPB_060534800 P0506C10.38 ENOG411DZGZ NAT2 Q94C70 NAT2_ARATH Nucleobase-ascorbate transporter 2 (AtNAT2) R-ATH-196836; 57614 Nucleobase-ascorbate transporter 2 (AtNAT2) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Highly expressed in gynoecium development, disappearing with maturation. {ECO:0000269|PubMed:16982705}. TISSUE SPECIFICITY: Expressed in cotyledons 10 days after imbibition (DAI). Expressed in the minor and major veins of cotyledons and leaves, in the shoot apex and pedicels. Expressed in the root meristems, root tips and lateral root primordia. {ECO:0000269|PubMed:16982705}. locus:2040874; AT2G34190 nucleobase-ascorbate transporter Os01g0759900 protein (Fragment),Os08g0369000 protein (Fragment),Os09g0320400 protein (Fragment) Q0JJ51,Q0J648,A0A0P0XKF7 Q0JJ51_ORYSJ,Q0J648_ORYSJ,A0A0P0XKF7_ORYSJ Os01g0759900 Os01g0759900 OSNPB_010759900,Os08g0369000 Os08g0369000 OSNPB_080369000,Os09g0320400 OSNPB_090320400 ENOG411DZGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411DZGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin response factor Auxin response factor 10,Auxin response factor 8,Auxin response factor Q7XKK6,Q6K223,A0A0N7KJD5 ARFJ_ORYSJ,ARFH_ORYSJ,A0A0N7KJD5_ORYSJ ARF10 Os04g0519700 LOC_Os04g43910 OsJ_014843 OSJNBa0019D11.3 OSJNBb0061C13.15,ARF8 Os02g0628600 LOC_Os02g41800 B1469H02.12 OsJ_07601,Os04g0519700 OSNPB_040519700 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. ENOG411DZGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: idnK gluconokinase homolog (E. coli) Os06g0114600 protein Q5VRM2 Q5VRM2_ORYSJ Os06g0114600 OSJNBa0019F11.6 OSNPB_060114600 P0541H01.28 ENOG411DZGR O80924,A0A1P8B0R4,F4KCF2 O80924_ARATH,A0A1P8B0R4_ARATH,F4KCF2_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Putative oxidoreductase),NAD(P)-binding Rossmann-fold superfamily protein 34884,28593,36191 NAD(P)-binding Rossmann-fold superfamily protein (Putative oxidoreductase),NAD(P)-binding Rossmann-fold superfamily protein oxidoreductase activity [GO:0016491]; pollen tube growth [GO:0009860],oxidoreductase activity [GO:0016491] locus:2040676;,locus:2181778; AT2G37540,AT5G02540 Dehydrogenase Os01g0151700 protein (Putative pod-specific dehydrogenase SAC25) (cDNA clone:J013123E12, full insert sequence) Q9LGI8 Q9LGI8_ORYSJ Os01g0151700 OSNPB_010151700 P0009G03.22 P0030H07.1 ENOG411DZGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DZGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL10 (Protein YELLOW STRIPE LIKE 10) (OsYSL10) Q0J932 YSL10_ORYSJ YSL10 Os04g0674600 LOC_Os04g57840 OsJ_015875 OsJ_16603 OSJNBa0018M05.14 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DZGV CNGC8,CNGC7 Q9FXH6,Q9S9N5,A0A1P8AVR5 CNGC8_ARATH,CNGC7_ARATH,A0A1P8AVR5_ARATH Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8),Putative cyclic nucleotide-gated ion channel 7 (Cyclic nucleotide- and calmodulin-regulated ion channel 7),Cyclic nucleotide gated channel 8 FUNCTION: Putative cyclic nucleotide-gated ion channel. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 85983,84634,62292 Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8),Putative cyclic nucleotide-gated ion channel 7 (Cyclic nucleotide- and calmodulin-regulated ion channel 7),Cyclic nucleotide gated channel 8 integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; pollen tube growth [GO:0009860]; regulation of membrane potential [GO:0042391],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; pollen tube growth [GO:0009860]; regulation of membrane potential [GO:0042391]; response to cadmium ion [GO:0046686],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] locus:2013139;,locus:2200502; AT1G19780,AT1G15990 ion channel Os03g0646300 protein,Os12g0468500 protein Q0DQ06,B9GD29 Q0DQ06_ORYSJ,B9GD29_ORYSJ Os03g0646300 Os03g0646300 OSNPB_030646300,Os12g0468500 OsJ_36049 OSNPB_120468500 ENOG411DZGU PIGC O64761 PIGC_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit C (EC 2.4.1.198) (Phosphatidylinositol-glycan biosynthesis class C protein) DISRUPTION PHENOTYPE: Defective in pollen germination and pollen tube growth. {ECO:0000269|PubMed:14671020}. FUNCTION: Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis (Probable). Required for pollen germination and pollen tube growth (PubMed:14671020). {ECO:0000269|PubMed:14671020, ECO:0000305}. PATHWAY: Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis. {ECO:0000305}. ARA:AT2G34980-MONOMER; R-ATH-162710; 2.4.1.198 34200 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C (EC 2.4.1.198) (Phosphatidylinositol-glycan biosynthesis class C protein) glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex [GO:0000506]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; catalytic activity [GO:0003824]; phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]; GPI anchor biosynthetic process [GO:0006506]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and pollen grains. {ECO:0000269|PubMed:14671020}. locus:2044727; AT2G34980 Phosphatidylinositol n-acetylglucosaminyltransferase subunit Os02g0622200 protein (Putative phosphatidylinositol glycan, class C phosphatidylinositol-glycan biosynthesis, class C protein) Q6K9N0 Q6K9N0_ORYSJ Os02g0622200 Os02g0622200 OJ1234_B11.28 OsJ_07572 OSNPB_020622200 ENOG411DZGT NAC098 O04017 NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 (NAC domain-containing protein 98) (ANAC098) (NAC domain-containing protein CUC2) Cup-shaped seedlings form with high frequency. Less frequently fusions of one cotyledon margin are observed.,High frequency of production of cup-shaped cotyledons in seedlings more than half fail to produce primary shoots.,Production of the first pair of leaf primordia is significantly delayed compared to the wild type. This likely reflects a defect in embryonic shoot meristem initiation.,Four distinct sepal primordia are initiated in a normal pattern during stage 3 of flower development as was seen previously for cuc2-1 and rbe-3 single mutants. Later growth of sepal primordia in the cuc2-1 rbe-3 double is uneven similar to that seen in rbe-3 single mutants. An increased extent of sepal fusion in the cuc2-1 rbe-3 double mutant as compared with cuc2-1 was first observed during stage 6.,In double mutant flowers sepal fusion occurred more often and to a greater extent than in either single mutant. Low penetrance of heart-shaped cotyledons-M. Tasaka -1997 FUNCTION: Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. 41434 Protein CUP-SHAPED COTYLEDON 2 (NAC domain-containing protein 98) (ANAC098) (NAC domain-containing protein CUC2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; formation of plant organ boundary [GO:0090691]; leaf development [GO:0048366]; primary shoot apical meristem specification [GO:0010072]; regulation of timing of plant organ formation [GO:0090709]; secondary shoot formation [GO:0010223]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First expressed in early to mid-globular-stage embryos. In late globular stage, detected as a stripe running medially across the top of the embryo. In heart stage embryo, expression is restricted to a stripe between the cotyledon primordia, but confined to hypodermal cells. In the bending-cotyledon stage, localized in a region surrounding the SAM, that correspond to the boundary region of cotyledon margins (BCM) and the boundaries between SAM and cotyledons, including protoderm cells. Observed in the margins of leaf primordia, and later restricted to the leaf sinus region, with a diminution in outgrowing teeth. Restricted to the proximal part of mature leaves. Expressed at the boundaries between the inflorescence meristem (IM) and flower primordia. Once the flower starts to grow out and the internode begin to elongates, restricted to the axils of the floral pedicels through several nodes. Detected within floral primordia, between sepal primordia and the floral meristem. Also present at the boundaries of individual sepal primordia, as well as in the region surrounding each petal and stamen primordium. Later detected transiently at the boundaries between locules of each theca in anthers. Expression at the inner part of presumtive septal regions that raises to include presumptive placenta, at the tips of septal primordia, as septum grow. Localized in the fused region of the septum. Found at the boundaries of ovule primordia, and later at the boundary between the nucellus and the chalaza. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17251269}. TISSUE SPECIFICITY: Mostly expressed in buds and flowers, and, to a lower extent, in the aerial parts of seedling, inflorescence and old silique. In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:15053771, ECO:0000269|PubMed:9212461}. locus:2154684; AT5G53950 Protein CUP-SHAPED COTYLEDON Os06g0344900 protein (Putative NAM) Q5Z7R9 Q5Z7R9_ORYSJ Os06g0344900 OSJNBa0021N09.15 OSNPB_060344900 ENOG411DZG9 PHT1-9,PHT1-8,PHT1;8 Q9S735,Q9SYQ1,A0A1P8AWF0 PHT19_ARATH,PHT18_ARATH,A0A1P8AWF0_ARATH Probable inorganic phosphate transporter 1-9 (AtPht1;9) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-8 (AtPht1;8) (H(+)/Pi cotransporter),Phosphate transporter 18 FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. 58701,59163,65317 Probable inorganic phosphate transporter 1-9 (AtPht1;9) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-8 (AtPht1;8) (H(+)/Pi cotransporter),Phosphate transporter 18 integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; ATPase-coupled phosphate ion transmembrane transporter activity [GO:0015415]; phosphate ion transmembrane transporter activity [GO:0015114]; symporter activity [GO:0015293]; arsenate ion transmembrane transport [GO:1901684]; phosphate ion transport [GO:0006817],integral component of plasma membrane [GO:0005887]; substrate-specific transmembrane transporter activity [GO:0022891]; symporter activity [GO:0015293]; phosphate ion transport [GO:0006817],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] TISSUE SPECIFICITY: In roots. {ECO:0000269|PubMed:15604713}. locus:2011681;,locus:2037390; AT1G76430,AT1G20860 phosphate transporter Probable inorganic phosphate transporter 1-10 (OsPT10) (OsPht1;10) (H(+)/Pi cotransporter),Probable inorganic phosphate transporter 1-9 (OsPT9) (OsPht1;9) (H(+)/Pi cotransporter),Os06g0324800 protein (Fragment) Q69T94,Q8H6G7,A0A0P0WVZ3 PT110_ORYSJ,PHT19_ORYSJ,A0A0P0WVZ3_ORYSJ PHT1-10 PT10 Os06g0325200 LOC_Os06g21950 OsJ_020312 P0421H01.35 P0652D10.5,PHT1-9 PT9 Os06g0324800 LOC_Os06g21920 OsJ_21168,Os06g0324800 OSNPB_060324800 FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. ENOG411DZG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ligand-gated ion channel Os06g0188800 protein (Fragment),Os06g0190500 protein (Fragment),Os06g0190700 protein,Os06g0190000 protein A0A0P0WTQ8,A0A0P0WU14,A0A0N7KLP1,A0A0P0WTV5,A0A0P0WTY4 A0A0P0WTQ8_ORYSJ,A0A0P0WU14_ORYSJ,A0A0N7KLP1_ORYSJ,A0A0P0WTV5_ORYSJ,A0A0P0WTY4_ORYSJ Os06g0188800 OSNPB_060188800,Os06g0190500 OSNPB_060190500,Os06g0190700 OSNPB_060190700,Os06g0190000 OSNPB_060190000 ENOG411DZG2 ATL40 Q9SLC4 ATL40_ARATH RING-H2 finger protein ATL40 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL40) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 24422 RING-H2 finger protein ATL40 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL40) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2053776; AT2G42350 RING-H2 finger protein Os01g0755700 protein (RING zinc finger protein-like) (cDNA clone:002-152-A11, full insert sequence) Q8S1W2 Q8S1W2_ORYSJ Os01g0755700 Os01g0755700 OSNPB_010755700 P0503C12.38 ENOG411DZG1 SLD1,SLD2 Q9ZRP7,Q3EBF7 SLD1_ARATH,SLD2_ARATH Delta(8)-fatty-acid desaturase 1 (EC 1.14.19.29) (Delta(8)-sphingolipid desaturase 1) (Sphingoid long-chain base desaturase 1) (Sphingoid LCB desaturase 1) (Sphingolipid 8-(E/Z)-desaturase 1),Delta(8)-fatty-acid desaturase 2 (EC 1.14.19.29) (Delta(8)-sphingolipid desaturase 2) (Sphingoid long-chain base desaturase 2) (Sphingoid LCB desaturase 2) (Sphingolipid 8-(E/Z)-desaturase 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have strongly reduced levels of unsaturated LCB sphingolipids in all organs and show enhanced sensitivity to prolonged low-temperature exposure. {ECO:0000269|PubMed:22023480}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show enhanced sensitivity to prolonged low-temperature exposure. {ECO:0000269|PubMed:22023480}. FUNCTION: Plays a major role as delta(8)-fatty-acid desaturase which introduces a double bond at the 8-position in the long-chain base (LCB) of ceramides with or without a hydroxy group at the 4-position. The enzyme produces both the 8E and 8Z isomers (in a 4:1 ratio). This structural modification contributes to the quantitative partitioning of ceramides between the two major sphingolipid classes, glucosylceramides and glycosylinositolphosphoryl ceramides. Sphingolipids are important membrane components involved in environmental stress responses, such as resistance to chilling, and act as cell signaling molecules. {ECO:0000269|PubMed:22023480, ECO:0000269|PubMed:9786850}.,FUNCTION: Plays a major role as delta(8)-fatty-acid desaturase which introduces a double bond at the 8-position in the long-chain base (LCB) of ceramides with or without a hydroxy group at the 4-position. The enzyme produces both the 8E and 8Z isomers (in a 4:1 ratio). This structural modification contributes to the quantitative partitioning of ceramides between the two major sphingolipid classes, glucosylceramides and glycosylinositolphosphoryl ceramides. Sphingolipids are important membrane components involved in environmental stress responses, such as resistance to chilling, and act as cell signaling molecules. {ECO:0000269|PubMed:22023480}. ARA:AT3G61580-MONOMER;MetaCyc:AT3G61580-MONOMER;,ARA:AT2G46210-MONOMER; R-ATH-2046105;R-ATH-2046106; 1.14.19.29 51675,51498 Delta(8)-fatty-acid desaturase 1 (EC 1.14.19.29) (Delta(8)-sphingolipid desaturase 1) (Sphingoid long-chain base desaturase 1) (Sphingoid LCB desaturase 1) (Sphingolipid 8-(E/Z)-desaturase 1),Delta(8)-fatty-acid desaturase 2 (EC 1.14.19.29) (Delta(8)-sphingolipid desaturase 2) (Sphingoid long-chain base desaturase 2) (Sphingoid LCB desaturase 2) (Sphingolipid 8-(E/Z)-desaturase 2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; sphingolipid delta-8 desaturase activity [GO:0052631]; cellular response to cold [GO:0070417]; lipid metabolic process [GO:0006629]; sphingolipid biosynthetic process [GO:0030148],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; sphingolipid delta-8 desaturase activity [GO:0052631]; cellular response to cold [GO:0070417]; sphingolipid biosynthetic process [GO:0030148] TISSUE SPECIFICITY: Highly expressed in flowers. Expressed in roots, leaves, stems and siliques. {ECO:0000269|PubMed:22023480}.,TISSUE SPECIFICITY: Highly expressed in flowers and siliques. Expressed at low levels in roots, leaves and stems. {ECO:0000269|PubMed:22023480}. locus:2082792;,locus:2062928; AT3G61580,AT2G46210 Desaturase Os09g0338500 protein (Putative delta-6-desaturase) (cDNA clone:001-017-B11, full insert sequence) Q6ERL2 Q6ERL2_ORYSJ Os09g0338500 OJ1118_A10.27 OSNPB_090338500 ENOG411DZG6 DRG3 Q9SVA6 DRG3_ARATH Developmentally-regulated G-protein 3 (AtDRG3) (Developmentally-regulated G-protein 1) (AtDRG1) FUNCTION: Binds GDP and GTP, and has low GTPase activity in vitro. {ECO:0000269|PubMed:19460440}. 41144 Developmentally-regulated G-protein 3 (AtDRG3) (Developmentally-regulated G-protein 1) (AtDRG1) cytosol [GO:0005829]; GDP binding [GO:0019003]; GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2122536; AT4G39520 gtp-binding protein Os07g0627800 protein (Putative GTP-binding protein DRG) (cDNA clone:J013063L05, full insert sequence) Q7XI68 Q7XI68_ORYSJ P0506F02.114 Os07g0627800 OSNPB_070627800 ENOG411EE1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EE1K TCX8 Q700D0 TCX8_ARATH Protein tesmin/TSO1-like CXC 8 (AtTCX8) FUNCTION: Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. 41200 Protein tesmin/TSO1-like CXC 8 (AtTCX8) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275] locus:2093417; AT3G16160 Pfam:CXC NA NA NA NA NA NA NA ENOG411EE1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EE1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411EE1N SRS7 Q9FXH7 SRS7_ARATH Protein SHI RELATED SEQUENCE 7 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. 37928 Protein SHI RELATED SEQUENCE 7 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269|PubMed:20706774}. TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269|PubMed:20706774}. locus:2013109; AT1G19790 Domain of unknown function (DUF702) NA NA NA NA NA NA NA ENOG411EE1A GLP8 P93000 GL23_ARATH Germin-like protein subfamily 2 member 3 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 23033 Germin-like protein subfamily 2 member 3 apoplast [GO:0048046]; cell wall [GO:0005618]; plasmodesma [GO:0009506]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; plasmodesmata-mediated intercellular transport [GO:0010497]; regulation of root development [GO:2000280] locus:2074489; AT3G05930 germin-like protein 8 NA NA NA NA NA NA NA ENOG411E89R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0961000 protein Q5JMT7 Q5JMT7_ORYSJ Os01g0961000 Os01g0961000 OSNPB_010961000 P0401G10.31 P0483G10.6 ENOG411EE1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MRNA cap guanine-N7 methyltransferase NA NA NA NA NA NA NA ENOG411EC3U Q1PEU9,Q58G02,Q9C6D5,A0A1P8AX72,F4I3E1,F4IQ44 FBK43_ARATH,Q58G02_ARATH,Q9C6D5_ARATH,A0A1P8AX72_ARATH,F4I3E1_ARATH,F4IQ44_ARATH F-box/kelch-repeat protein At2g43270,F-box/LRR protein,F-box associated ubiquitination effector family protein (Uncharacterized protein F10F5.4),F-box associated ubiquitination effector family protein 23986,22634,33337,29607,35700,24667 F-box/kelch-repeat protein At2g43270,F-box/LRR protein,F-box associated ubiquitination effector family protein (Uncharacterized protein F10F5.4),F-box associated ubiquitination effector family protein integral component of membrane [GO:0016021]; nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:504955914;,locus:2007288;,locus:2827348; AT2G43270,AT2G30615,AT1G49790,AT2G42955 F-box associated domain NA NA NA NA NA NA NA ENOG411EC3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Protein disulfide isomerase-like 1-3 (OsPDIL1-3) (EC 5.3.4.1),Os02g0554900 protein (Fragment) Q69ST6,A0A0P0VKF5 PID13_ORYSJ,A0A0P0VKF5_ORYSJ PDIL1-3 Os02g0554900 LOC_Os02g34940 P0470G10.25,Os02g0554900 OSNPB_020554900 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411EC3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os10g0124500 protein) Q7G604 Q7G604_ORYSJ LOC_Os10g03600 Os10g0124500 OsJ_30583 OSJNAa0049K09.21 OSJNBa0056A20.9 OSNPB_100124500 ENOG411EC3V Q56XU3,F4I819 Q56XU3_ARATH,F4I819_ARATH Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein At5g45000),Vesicle-associated protein 1-4 48705,45469 Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein At5g45000),Vesicle-associated protein 1-4 signal transduction [GO:0007165] locus:2155387; AT5G45000,AT1G51270 TIR NA NA NA NA NA NA NA ENOG411EC3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q8GVF7 Q8GVF7_ORYSJ OJ1340_C08.128 prx108 Os07g0639400 OSNPB_070639400 ENOG411EC3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0609900 protein Q0DZM8 Q0DZM8_ORYSJ Os02g0609900 Os02g0609900 OSNPB_020609900 ENOG411EC3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC3X PER23,PER22 O80912,P24102 PER23_ARATH,PER22_ARATH Peroxidase 23 (Atperox P23) (EC 1.11.1.7) (ATP34),Peroxidase 22 (Atperox P22) (EC 1.11.1.7) (ATPEa) (Basic peroxidase E) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G38390-MONOMER;,ARA:AT2G38380-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 38100,38108 Peroxidase 23 (Atperox P23) (EC 1.11.1.7) (ATP34),Peroxidase 22 (Atperox P22) (EC 1.11.1.7) (ATPEa) (Basic peroxidase E) extracellular region [GO:0005576]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043] TISSUE SPECIFICITY: Mainly expressed in roots. {ECO:0000269|PubMed:7672266, ECO:0000269|Ref.7}. locus:2057165;,locus:2057180; AT2G38390,AT2G38380 Removal of H(2)O(2) oxidation of toxic reductants biosynthesis and degradation of lignin suberization auxin catabolism response to environmental stresses such as wounding pathogen attack and oxidative stress. These functions might be dependent on each isozyme isoform in each plant tissue NA NA NA NA NA NA NA ENOG411EC3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os10g0171300 protein (Fragment) Q0IYR6 Q0IYR6_ORYSJ Os10g0171300 Os10g0171300 OSNPB_100171300 ENOG411EC3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EC3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: protein Hydra magnipapillata NA NA NA NA NA NA NA ENOG411EC3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tudor domain OSJNBb0012E08.11 protein (Os04g0402200 protein) Q7XV85 Q7XV85_ORYSJ Os04g0402200 OsJ_14666 OSJNBb0012E08.11 OSNPB_040402200 ENOG411EC3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0474500 protein (Os11g0474533 protein) Q2R4H4 Q2R4H4_ORYSJ Os11g0474500 LOC_Os11g28470 Os11g0474533 OsJ_33867 OSNPB_110474500 ENOG411EC3C ACA7,ACA1,ACA2 O64806,Q37145,O81108,F4HUS8 ACA7_ARATH,ACA1_ARATH,ACA2_ARATH,F4HUS8_ARATH Putative calcium-transporting ATPase 7, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7),Calcium-transporting ATPase 1 (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1),Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2),Calcium-transporting ATPase (EC 3.6.3.8) FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles. {ECO:0000250}.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into the endoplasmic reticulum.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. {ECO:0000256|RuleBase:RU361146}. ARA:AT2G22950-MONOMER;,ARA:AT1G27770-MONOMER;MetaCyc:MONOMER-14612;,ARA:AT4G37640-MONOMER;MetaCyc:MONOMER-14659; R-ATH-418359;R-ATH-5578775;R-ATH-936837; 3.6.3.8 110773,111261,110439,103717 Putative calcium-transporting ATPase 7, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7),Calcium-transporting ATPase 1 (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1),Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2),Calcium-transporting ATPase (EC 3.6.3.8) integral component of plasma membrane [GO:0005887]; intracellular membrane-bounded organelle [GO:0043231]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872]; pollen development [GO:0009555],chloroplast inner membrane [GO:0009706]; endoplasmic reticulum [GO:0005783]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium channel activity [GO:0005262]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion transmembrane transporter activity [GO:0015085]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872]; transport [GO:0006810],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516] TISSUE SPECIFICITY: Expressed at higher levels in roots than in leaves. locus:2059201;,locus:2029794;,locus:2120096; AT2G22950,AT1G27770,AT4G37640 Ca2+-ATPase N terminal autoinhibitory domain Calcium-transporting ATPase (EC 3.6.3.8) Q10QA3 Q10QA3_ORYSJ Os03g0203700 LOC_Os03g10640 Os03g0203700 OSNPB_030203700 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. {ECO:0000256|RuleBase:RU361146}. ENOG411EC3B Q9LK53 Y3319_ARATH WEB family protein At3g13190 35640 WEB family protein At3g13190 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2089979; AT3G13190 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411EC3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase 3 N-terminal region Os02g0217000 protein,Lipase class 3 family protein, putative (Os05g0243902 protein) (Os11g0647100 protein),Os03g0712000 protein A3A4K1,Q2R0F5,A0A0P0W2G6 A3A4K1_ORYSJ,Q2R0F5_ORYSJ,A0A0P0W2G6_ORYSJ Os02g0217000 OsJ_05895 OSNPB_020217000,Os05g0243902 Os11g0647100 LOC_Os11g42730 OsJ_17773 OSNPB_050243902 OSNPB_110647100,Os03g0712000 OSNPB_030712000 ENOG411EC3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EC3I MJK13.11 Q9LE80,B9DG40,F4IYS4 Q9LE80_ARATH,B9DG40_ARATH,F4IYS4_ARATH Aluminum induced protein with YGL and LRDR motifs (At3g15450/MJK13_11) (MJK13.11 protein),AT3G15450 protein (Aluminum induced protein with YGL and LRDR motifs),Aluminum induced protein with YGL and LRDR motifs 27700,23012,20535 Aluminum induced protein with YGL and LRDR motifs (At3g15450/MJK13_11) (MJK13.11 protein),AT3G15450 protein (Aluminum induced protein with YGL and LRDR motifs),Aluminum induced protein with YGL and LRDR motifs locus:2090116; AT3G15450 Pfam:DUF3711 NA NA NA NA NA NA NA ENOG411EC3H EDA24 Q9CAL1 Q9CAL1_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein F24J13.11) 17707 Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein F24J13.11) cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; polar nucleus fusion [GO:0010197] locus:2026800; AT1G70540 PMEI NA NA NA NA NA NA NA ENOG411EC3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 OSJNBb0050N09.10 protein (Os04g0164000 protein),OSJNBb0050N09.3 protein (Os04g0162800 protein),Os04g0163800 protein (Fragment) Q7XQV9,Q7XQW6,Q0JF45 Q7XQV9_ORYSJ,Q7XQW6_ORYSJ,Q0JF45_ORYSJ Os04g0164000 OsJ_13769 OSJNBb0050N09.10 OSNPB_040164000,Os04g0162800 Os04g0162800 OsJ_13765 OSJNBb0050N09.3 OSNPB_040162800,Os04g0163800 Os04g0163800 OSNPB_040163800 ENOG411EC3J PHYL1.2 Q84WF5,A0A1P8AVT5 PHL12_ARATH,A0A1P8AVT5_ARATH Phytolongin Phyl1.2,SNARE-like superfamily protein FUNCTION: Non-SNARE longin protein involved in membrane-trafficking machinery. {ECO:0000305|PubMed:19889231}. 28773,17405 Phytolongin Phyl1.2,SNARE-like superfamily protein integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021] locus:504956331; AT1G33475 Inherit from KOG: finger protein NA NA NA NA NA NA NA ENOG411EC35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase (DUF3321) NA NA NA NA NA NA NA ENOG411EC34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os05g0165900 protein (cDNA clone:J033118J02, full insert sequence),OSJNBa0094O15.4 protein (Os04g0103500 protein),Os07g0186200 protein (Putative S-receptor kinase),OSJNBa0094O15.5 protein (Os04g0103700 protein),Os05g0166300 protein (cDNA, clone: J065123N18, full insert sequence),Os05g0166600 protein,D-mannose binding lectin family protein, expressed (Os11g0208800 protein) (cDNA clone:J033112N10, full insert sequence),Os05g0166900 protein (Fragment),Os04g0225250 protein (Fragment),Os11g0208700 protein Q60D78,Q7XMR2,Q7XI25,Q7XXJ5,Q60D69,Q60D68,Q2R917,A0A0P0WIC4,A0A0P0W811,A0A0P0Y0I8 Q60D78_ORYSJ,Q7XMR2_ORYSJ,Q7XI25_ORYSJ,Q7XXJ5_ORYSJ,Q60D69_ORYSJ,Q60D68_ORYSJ,Q2R917_ORYSJ,A0A0P0WIC4_ORYSJ,A0A0P0W811_ORYSJ,A0A0P0Y0I8_ORYSJ Os05g0165900 OSJNBa0073C10.2 OSNPB_050165900,Os04g0103500 OSJNBa0094O15.4 OSNPB_040103500,Os07g0186200 OJ1339_B08.15 OsJ_23371 OSNPB_070186200 P0506C07.6,Os04g0103700 OSJNBa0094O15.5 OSNPB_040103700,Os05g0166300 OSJNBa0073C10.11 OSNPB_050166300,Os05g0166600 Os05g0166600 OSJNBa0073C10.12 OSNPB_050166600,Os11g0208800 LOC_Os11g10290 OSNPB_110208800,Os05g0166900 OSNPB_050166900,Os04g0225250 OSNPB_040225250,Os11g0208700 OSNPB_110208700 ENOG411EC37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0633950 protein,Os01g0784450 protein (Fragment),Os01g0784101 protein,Os03g0556500 protein (Fragment),Os05g0501500 protein (Fragment),Os04g0632750 protein A0A0P0WF85,A0A0P0V913,A0A0P0V946,A0A0P0W063,A0A0P0WPF2,A0A0P0WFI7 A0A0P0WF85_ORYSJ,A0A0P0V913_ORYSJ,A0A0P0V946_ORYSJ,A0A0P0W063_ORYSJ,A0A0P0WPF2_ORYSJ,A0A0P0WFI7_ORYSJ Os04g0633950 OSNPB_040633950,Os01g0784450 OSNPB_010784450,Os01g0784101 OSNPB_010784101,Os03g0556500 OSNPB_030556500,Os05g0501500 OSNPB_050501500,Os04g0632750 OSNPB_040632750 ENOG411EC36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC31 Q9LFP3,W8PUF9 GLYT4_ARATH,W8PUF9_ARATH Probable glycosyltransferase At5g11130 (EC 2.4.-.-),Exostosin family protein (Glycosyltransferase) (Fragment) FUNCTION: May be involved in cell wall biosynthesis. ARA:AT5G11130-MONOMER; 2.4.-.- 55363,39298 Probable glycosyltransferase At5g11130 (EC 2.4.-.-),Exostosin family protein (Glycosyltransferase) (Fragment) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555],transferase activity [GO:0016740] locus:2147927; AT5G11130 Exostosin family NA NA NA NA NA NA NA ENOG411EC30 Q9FI71,Q9SK64,Q9SV98,Q9M0U2,Q9FI72,A0A1P8B689 FK121_ARATH,FB114_ARATH,FK103_ARATH,FB222_ARATH,FK120_ARATH,A0A1P8B689_ARATH F-box/kelch-repeat protein At5g48990,F-box protein At2g20380,Putative F-box/kelch-repeat protein At4g39600,Putative F-box protein At4g05620,F-box/kelch-repeat protein At5g48980,Galactose oxidase/kelch repeat superfamily protein 42411,39662,41212,14890,45722,42194 F-box/kelch-repeat protein At5g48990,F-box protein At2g20380,Putative F-box/kelch-repeat protein At4g39600,Putative F-box protein At4g05620,F-box/kelch-repeat protein At5g48980,Galactose oxidase/kelch repeat superfamily protein ubiquitin-dependent protein catabolic process [GO:0006511] locus:2154394;,locus:2038987;,locus:2122531;,locus:2121571;,locus:2154379; AT5G48990,AT2G20380,AT4G39600,AT4G05620,AT5G48980 FBOX NA NA NA NA NA NA NA ENOG411EC33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family Os05g0272300 protein A0A0N7KKF8 A0A0N7KKF8_ORYSJ Os05g0272300 OSNPB_050272300 ENOG411EC32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os03g0269300 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J033059J17, full insert sequence),Os03g0269300 protein,Os03g0583600 protein,Os09g0314800 protein (Fragment) Q10NG8,A0A0N7KH03,A0A0N7KHK5,A0A0P0XKU7 Q10NG8_ORYSJ,A0A0N7KH03_ORYSJ,A0A0N7KHK5_ORYSJ,A0A0P0XKU7_ORYSJ Os03g0269300 LOC_Os03g16260 Os03g0269300 OSNPB_030269300,Os03g0269300 OSNPB_030269300,Os03g0583600 OSNPB_030583600,Os09g0314800 OSNPB_090314800 ENOG411EC39 LAC10 Q6ID18,A0A1R7T3A1 LAC10_ARATH,A0A1R7T3A1_ARATH Laccase-10 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 10) (Diphenol oxidase 10) (Urishiol oxidase 10),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) no observable phenotype FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ARA:AT5G01190-MONOMER; 1.10.3.2 61298,59725 Laccase-10 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 10) (Diphenol oxidase 10) (Urishiol oxidase 10),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Ubiquitous, with lower levels in siliques. {ECO:0000269|PubMed:16804053}. locus:2150139; AT5G01190 Multicopper oxidase NA NA NA NA NA NA NA ENOG411EC38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411ECYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family NA NA NA NA NA NA NA ENOG411ECYH ARI16 Q9C5A4 ARI16_ARATH Probable E3 ubiquitin-protein ligase ARI16 (EC 2.3.2.-) (ARIADNE-like protein ARI16) (Protein ariadne homolog 16) (RING-type E3 ubiquitin transferase ARI16) FUNCTION: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. {ECO:0000250, ECO:0000269|PubMed:12446796}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.- 56632 Probable E3 ubiquitin-protein ligase ARI16 (EC 2.3.2.-) (ARIADNE-like protein ARI16) (Protein ariadne homolog 16) (RING-type E3 ubiquitin transferase ARI16) cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] TISSUE SPECIFICITY: Preferentially expressed in green siliques. {ECO:0000269|PubMed:12529512}. locus:504956341; AT5G08730 IBR domain-containing protein NA NA NA NA NA NA NA ENOG411ECYC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Proteasome_A_N Proteasome subunit alpha type (EC 3.4.25.1) Q94II8 Q94II8_ORYSJ OsPAA2 P0616D06.113 Os07g0614100 OSNPB_070614100 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU000551}. ENOG411ECYB Q9LJV9 P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 (p24 family protein delta11) (p24delta11) (p24 family protein delta2e) (p24delta2e) FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811434; 25970 Transmembrane emp24 domain-containing protein p24delta11 (p24 family protein delta11) (p24delta11) (p24 family protein delta2e) (p24delta2e) endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2092788; AT3G29070 emp24/gp25L/p24 family/GOLD NA NA NA NA NA NA NA ENOG411ECYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein NA NA NA NA NA NA NA ENOG411E90F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein NA NA NA NA NA NA NA ENOG411E90D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E90E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E90B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0512450 protein (Fragment),Os06g0642550 protein,Os06g0349750 protein (Fragment),Os05g0494050 protein (Fragment),Os02g0186950 protein (Fragment),Os01g0377250 protein,Os09g0263972 protein (Fragment),Os08g0131150 protein (Fragment),Os10g0196400 protein (Fragment),Os03g0367150 protein (Fragment),Os09g0441250 protein (Fragment),Os09g0530350 protein (Fragment),Os04g0101550 protein (Fragment) A0A0P0XW75,A0A0P0WZ72,A0A0P0WWP3,A0A0P0WNZ1,A0A0P0VFM7,A0A0P0V393,A0A0P0XJ69,A0A0P0XBK4,A0A0P0XT50,A0A0P0VXR7,A0A0P0XN38,A0A0P0XQ79,A0A0P0W6C9 A0A0P0XW75_ORYSJ,A0A0P0WZ72_ORYSJ,A0A0P0WWP3_ORYSJ,A0A0P0WNZ1_ORYSJ,A0A0P0VFM7_ORYSJ,A0A0P0V393_ORYSJ,A0A0P0XJ69_ORYSJ,A0A0P0XBK4_ORYSJ,A0A0P0XT50_ORYSJ,A0A0P0VXR7_ORYSJ,A0A0P0XN38_ORYSJ,A0A0P0XQ79_ORYSJ,A0A0P0W6C9_ORYSJ Os10g0512450 OSNPB_100512450,Os06g0642550 OSNPB_060642550,Os06g0349750 OSNPB_060349750,Os05g0494050 OSNPB_050494050,Os02g0186950 OSNPB_020186950,Os01g0377250 OSNPB_010377250,Os09g0263972 OSNPB_090263972,Os08g0131150 OSNPB_080131150,Os10g0196400 OSNPB_100196400,Os03g0367150 OSNPB_030367150,Os09g0441250 OSNPB_090441250,Os09g0530350 OSNPB_090530350,Os04g0101550 OSNPB_040101550 ENOG411E90C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411E90A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E90N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0149800 protein A0A0P0XZ56 A0A0P0XZ56_ORYSJ Os11g0149800 OSNPB_110149800 ENOG411E90M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0207400 protein (Fragment) A0A0N7KSL3 A0A0N7KSL3_ORYSJ Os11g0207400 OSNPB_110207400 ENOG411E90J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retroviral aspartyl protease NA NA NA NA NA NA NA ENOG411E90K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E90H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411E90I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: helicase NA NA NA NA NA NA NA ENOG411E90V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411E90W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Complex1_24kDa NA NA NA NA NA NA NA ENOG411E90T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA NA NA NA NA NA NA NA ENOG411E90R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E90S rpl36 P62117 RK36_ARATH 50S ribosomal protein L36, chloroplastic 4460 50S ribosomal protein L36, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954699; ATCG00760 structural constituent of ribosome 50S ribosomal protein L36, chloroplastic P62727 RK36_ORYSJ rpl36 LOC_Osp1g00680 ENOG411E90P MGN6.1 Q9FI09 Q9FI09_ARATH Transmembrane protein 28055 Transmembrane protein integral component of membrane [GO:0016021] locus:2164032; AT5G53670 Inherit from euNOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E90Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histidine kinase- DNA gyrase B- and HSP90-like ATPase NA NA NA NA NA NA NA ENOG411E90Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411ECYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E906 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0133300 protein A0A0P0WRW0 A0A0P0WRW0_ORYSJ Os06g0133300 OSNPB_060133300 ENOG411E907 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E902 Q8GW49 Q8GW49_ARATH At5g15190 (Uncharacterized protein At5g15190/F8M21_80) 13278 At5g15190 (Uncharacterized protein At5g15190/F8M21_80) chloroplast [GO:0009507] locus:2150961; AT5G15190 NA NA NA NA NA NA NA NA ENOG411E903 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: zpr3 zpr3 (little zipper 3) Os02g0530500 protein Q6H751 Q6H751_ORYSJ Os02g0530500 Os02g0530500 OSNPB_020530500 P0476H10.37 ENOG411E900 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: reductase Expressed protein (Os03g0661900 protein) (cDNA clone:J023133P22, full insert sequence),Os05g0147100 protein (Fragment) Q75GW5,A0A0P0WHX0 Q75GW5_ORYSJ,A0A0P0WHX0_ORYSJ Os03g0661900 LOC_Os03g45980 Os03g0661900 OSJNBa0034D21.24 OSNPB_030661900,Os05g0147100 OSNPB_050147100 ENOG411E901 Q6DYD3,Q6DYD4,B3H5C4,B3H7H3 Q6DYD3_ARATH,Q6DYD4_ARATH,B3H5C4_ARATH,B3H7H3_ARATH Transmembrane protein 21084,20614,20742,21212 Transmembrane protein integral component of membrane [GO:0016021] locus:504956116; AT1G77765 NA NA NA NA NA NA NA NA ENOG411E909 CESA6,CESA5 Q94JQ6,Q8L778 CESA6_ARATH,CESA5_ARATH Cellulose synthase A catalytic subunit 6 [UDP-forming] (AtCesA6) (EC 2.4.1.12) (AraxCelA) (Isoxaben-resistant protein 2) (Protein PROCUSTE 1) (Protein QUILL),Cellulose synthase A catalytic subunit 5 [UDP-forming] (AtCesA5) (EC 2.4.1.12) Dark-grown mutant hypocotyls accumulate ectopic lignin.,The hypocotyl growth rate of the mutant remained more or less constant before slowing down from day six on.,The cesa2/cesa6 double mutant has reduced hypocotyl length in the dark reduced root length in the light strong dwarf and bushy.,The homozygous cesa6/cesa5 double mutant is seedling lethal.,The double mutant seedlings had significantly shorter and swollen roots. The plants had stunted growth and reduced size.,the triple mutant pollen grains are severely deformed the pollen cell walls are unevenly deposited. The mutant pollen is not fertile.,When grown on media containing 0.5% sucrose the mutant had reduced root length but no apparent radial cell expansion.,Showed comparable decreases in the length of dark-grown hypocotyls accompanied by increases in width in both epidermal and cortical cells. FTIR microspectroscopy also indicated a cellulose deficiency in epidermal or cortical cells.,Callus-induced roots from the mutant displayed the mutant phenotype when they grew under restrictive conditions. All the mutants responded to a gravitropic stimulus in a manner similar to wild type although the change of the direction of growth was slower than wild type.,Both mutation are additive as shown by the further shortened hypocotyl length of the double mutant.,In the double mutant the amount of ectopic lignin was reduced in hypocotyls and entirely absent in the root.,The hypocotyl growth rate of the double mutant which was initially slower than that of prc1-1 strongly increased beyond day three to reach over half the growth rate of WT hypocotyls between day four and day five. Beyond day five the growth rate dropped but more gradually than that of the WT.,The number of cells in epidermal-cell files was unaltered in the double mutant compared to prc1-1 hypocotyls.,When expressed per seedling the 14C-glucose incorporation in the cellulosic fraction was reduced 2.5-fold in prc1-1 compared to the WT and did not differ significantly from that of the1-1/prc1-1 mutants; this confirmed that cellulose biosynthesis was not restored in the double mutant.,Partial restoration of the hypocotyl growth defect of prc1-8. Dwarf; Short roots; Cell wall defective; Resistant to isoxaben (herbicide)-H. Hofte-2002 FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation. The presence of each protein CESA1 and CESA6 is critical for cell expansion. The hypocotyl elongation is based on a CESA6-dependent cell elongation in dark and a CESA6-independent cell elongation in light. The transition between these two mechanisms requires photosynthesis and PHYB, but not CRY1. The CESA6-dependent cell elongation seems to be independent of gibberellic acid, auxin and ethylene. May be involved in sensitivity to isoxaben. Associates with and moves along cortical microtubules for the process of cellulose deposition. {ECO:0000269|PubMed:11148287, ECO:0000269|PubMed:11842152, ECO:0000269|PubMed:16627697, ECO:0000269|PubMed:17878302, ECO:0000269|PubMed:17878303, ECO:0000269|PubMed:7743935, ECO:0000269|PubMed:8625819}.,FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250, ECO:0000269|PubMed:17878303}. MISCELLANEOUS: Partially redundant with CESA6. PATHWAY: Glycan metabolism; plant cellulose biosynthesis. MetaCyc:MONOMER-2363;,ARA:AT5G09870-MONOMER; 2.4.1.12; 2.4.1.12 122502,120862 Cellulose synthase A catalytic subunit 6 [UDP-forming] (AtCesA6) (EC 2.4.1.12) (AraxCelA) (Isoxaben-resistant protein 2) (Protein PROCUSTE 1) (Protein QUILL),Cellulose synthase A catalytic subunit 5 [UDP-forming] (AtCesA5) (EC 2.4.1.12) cellulose synthase complex [GO:0010330]; Golgi apparatus [GO:0005794]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; metal ion binding [GO:0046872]; cell growth [GO:0016049]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; cortical microtubule organization [GO:0043622]; plant-type primary cell wall biogenesis [GO:0009833],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; mucilage biosynthetic process [GO:0010192]; plant-type primary cell wall biogenesis [GO:0009833] DEVELOPMENTAL STAGE: Not found in embryos. Higher levels in tissues undergoing primary cell wall formation, and drop of expression when secondary wall synthesis takes place. High levels in developing seedlings and elongating stems, with a decrease at later growth stages. {ECO:0000269|PubMed:11148287}.,DEVELOPMENTAL STAGE: Expressed at low levels in embryos. {ECO:0000269|PubMed:12481071}. TISSUE SPECIFICITY: Expressed in germinating seeds, seedlings, roots, stems, leaves and flowers. Not present in mature flowers. {ECO:0000269|PubMed:11148287, ECO:0000269|PubMed:12481071}.,TISSUE SPECIFICITY: Expressed in young plants, stems and flowers. {ECO:0000269|PubMed:12481071}. locus:2176090;,locus:2178193; AT5G64740,AT5G09870 Cellulose synthase NA NA NA NA NA NA NA ENOG411EEXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EEXT Q9C6T5 STGL3_ARATH Stigma-specific STIG1-like protein 3 17074 Stigma-specific STIG1-like protein 3 locus:2015863; AT1G50720 Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411EEXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: small nuclear ribonucleoprotein Os02g0106966 protein A0A0P0VDW6 A0A0P0VDW6_ORYSJ Os02g0106966 OSNPB_020106966 ENOG411E4E3 PDF1 Q9S728 PDF1_ARATH Protodermal factor 1 FUNCTION: May be involved in the regulation of meristem growth. {ECO:0000305}. 32227 Protodermal factor 1 extracellular region [GO:0005576] TISSUE SPECIFICITY: Confined to the shoot apical meristem (SAM) at the layer L1 in vegetative, infloresence and floral meristems, as well as in protoderm of organ primordia, including during embryogenesis. Also present in the tip of emerging lateral root primordia. {ECO:0000269|PubMed:10483121, ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:17376810}. locus:2052408; AT2G42840 NA NA NA NA NA NA NA NA ENOG411DUF7 SRP-54B,SRP-54C,SRP-54A P49966,P49967,P37106,Q1PDF5,A0A1P8BGB2,A8MSA9 SR542_ARATH,SR543_ARATH,SR541_ARATH,Q1PDF5_ARATH,A0A1P8BGB2_ARATH,A8MSA9_ARATH Signal recognition particle 54 kDa protein 2 (SRP54),Signal recognition particle 54 kDa protein 3 (SRP54),Signal recognition particle 54 kDa protein 1 (SRP54),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Signal recognition particle-like/SRP-like),Signal recognition particle, SRP54 subunit protein,Signal recognition particle 54 kDa protein FUNCTION: Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).,FUNCTION: Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). {ECO:0000256|RuleBase:RU364034}. R-ATH-1799339; 55263,54782,53007,19806,41820,47726 Signal recognition particle 54 kDa protein 2 (SRP54),Signal recognition particle 54 kDa protein 3 (SRP54),Signal recognition particle 54 kDa protein 1 (SRP54),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Signal recognition particle-like/SRP-like),Signal recognition particle, SRP54 subunit protein,Signal recognition particle 54 kDa protein signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614],cytosol [GO:0005829]; signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614],cytoplasm [GO:0005737]; signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614],signal recognition particle [GO:0048500]; 7S RNA binding [GO:0008312]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614] locus:2157809;,locus:2028563;,locus:2037803;,locus:2158103; AT5G49500,AT1G48900,AT1G15310,AT5G66970 signal recognition particle 54 kDa protein Signal recognition particle 54 kDa protein Q8S1I8,Q7XB57 Q8S1I8_ORYSJ,Q7XB57_ORYSJ srp54-1 Os01g0772800 OsJ_03626 OSNPB_010772800 P0490D09.4 P0695H10.26,srp54-2 Os05g0509500 OsJ_19149 OSJNBb0108E17.16 OSNPB_050509500 FUNCTION: Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). {ECO:0000256|RuleBase:RU364034}. ENOG411DUF6 AUL1,AP22.19 Q9FWS1,A0A1P8AND3,F4JPR4 AUL1_ARATH,A0A1P8AND3_ARATH,F4JPR4_ARATH Auxilin-like protein 1,Auxin-like 1 protein,Chaperone DnaJ-domain superfamily protein 162046,162175,162914 Auxilin-like protein 1,Auxin-like 1 protein,Chaperone DnaJ-domain superfamily protein vesicle [GO:0031982]; receptor-mediated endocytosis [GO:0006898] locus:2018462;,locus:2115245; AT1G75310,AT4G36520 DnaJ domain NA NA NA NA NA NA NA ENOG411DUF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LA Os08g0542900 protein (Putative RNA recognition motif (RRM)-containing protein) (cDNA clone:J033074I09, full insert sequence) Q6ZJG0 Q6ZJG0_ORYSJ Os08g0542900 OJ1521_G02.20 OsJ_28141 OSNPB_080542900 ENOG411DUF4 CCS1 Q9XIA4 CCS1_ARATH Cytochrome c biogenesis protein CCS1, chloroplastic (C-type cytochrome synthesis protein 1) FUNCTION: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. {ECO:0000250}. 59393 Cytochrome c biogenesis protein CCS1, chloroplastic (C-type cytochrome synthesis protein 1) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; cytochrome complex assembly [GO:0017004] locus:2010267; AT1G49380 cytochrome c biogenesis protein Cytochrome c biogenesis protein CCS1, chloroplastic (C-type cytochrome synthesis protein 1) Q75KA9 CCS1_ORYSJ CCS1 Os03g0769600 LOC_Os03g55970 OsJ_012198 OSJNBa0072F13.17 FUNCTION: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. {ECO:0000250}. ENOG411DUF3 RACK1A,RACK1C,RACK1B O24456,Q9LV28,Q9C4Z6 GBLPA_ARATH,GPLPC_ARATH,GPLPB_ARATH Receptor for activated C kinase 1A (Guanine nucleotide-binding protein subunit beta-like protein A) (WD-40 repeat auxin-dependent protein ARCA),Receptor for activated C kinase 1C (Guanine nucleotide-binding protein subunit beta-like protein C),Receptor for activated C kinase 1B (Guanine nucleotide-binding protein subunit beta-like protein B) DISRUPTION PHENOTYPE: Shorter hypocotyls in etiolated seedlings, epinastic cotyledons, reduced rosette leaf production by half and late flowering under short-day conditions. Reduced sensitivity to gibberellin and brassinosteroid in seed germination, hypersensitivity to abscisic acid in seed germination and early seedling development, and hyposensitivity to auxin in adventitious and lateral root formation. Plants show a significant resistance to water stress conditions by limiting water loss through the guard cells. {ECO:0000269|PubMed:16829549, ECO:0000269|PubMed:18715992, ECO:0000269|PubMed:18947417}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. {ECO:0000269|PubMed:18947417}. Downward-bending cotyledons; Small, narrow, downward-bending rosette leaves; Late flowering-A. Jones-2006 FUNCTION: Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:16829549, PubMed:18715992, PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164). {ECO:0000269|PubMed:16829549, ECO:0000269|PubMed:18715992, ECO:0000269|PubMed:18947417, ECO:0000269|PubMed:25731164}.,FUNCTION: Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164). {ECO:0000269|PubMed:18947417, ECO:0000269|PubMed:25731164}. 35748,35828,35801 Receptor for activated C kinase 1A (Guanine nucleotide-binding protein subunit beta-like protein A) (WD-40 repeat auxin-dependent protein ARCA),Receptor for activated C kinase 1C (Guanine nucleotide-binding protein subunit beta-like protein C),Receptor for activated C kinase 1B (Guanine nucleotide-binding protein subunit beta-like protein B) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; MAP-kinase scaffold activity [GO:0005078]; protein complex scaffold activity [GO:0032947]; signal transducer activity [GO:0004871]; structural constituent of ribosome [GO:0003735]; cellular response to abscisic acid stimulus [GO:0071215]; gibberellin mediated signaling pathway [GO:0010476]; positive regulation of signal transduction [GO:0009967]; regulation of translation [GO:0006417]; response to cadmium ion [GO:0046686]; response to gibberellin [GO:0009739]; response to glucose [GO:0009749]; ribosome assembly [GO:0042255]; ribosome biogenesis [GO:0042254]; seed germination [GO:0009845]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleolus [GO:0005730]; ribosome [GO:0005840]; MAP-kinase scaffold activity [GO:0005078]; signal transducer activity [GO:0004871]; cellular response to abscisic acid stimulus [GO:0071215]; positive regulation of signal transduction [GO:0009967]; root development [GO:0048364]; seed germination [GO:0009845]; shoot system development [GO:0048367],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; MAP-kinase scaffold activity [GO:0005078]; signal transducer activity [GO:0004871]; structural constituent of ribosome [GO:0003735]; cellular response to abscisic acid stimulus [GO:0071215]; positive regulation of signal transduction [GO:0009967]; regulation of translation [GO:0006417]; ribosome assembly [GO:0042255]; ribosome biogenesis [GO:0042254]; root development [GO:0048364]; seed germination [GO:0009845]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16829549, ECO:0000269|PubMed:18947417}. locus:2194060;,locus:2092707;,locus:2008159; AT1G18080,AT3G18130,AT1G48630 guanine nucleotide-binding protein Guanine nucleotide-binding protein subunit beta-like protein A (GPB-LR) (RWD) (Receptor for activated C kinase 1A),Guanine nucleotide-binding protein subunit beta-like protein B (GPB-LR) (Receptor for activated C kinase 1B) P49027,Q6L4F8 GBLPA_ORYSJ,GBLPB_ORYSJ RACK1A Os01g0686800 LOC_Os01g49290,RACK1B Os05g0552300 LOC_Os05g47890 OsJ_19467 OSJNBa0079H23.13 P0560C03.18 FUNCTION: Component of the RACK1 regulatory proteins that functions in innate immunity by interacting with multiple proteins in the RAC1 immune complex. Acts as positive regulator of reactive oxygen species (ROS) production and is required for resistance against rice blast (M.grisea) infection. {ECO:0000269|PubMed:18723578}.,FUNCTION: Component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. {ECO:0000250}. ENOG411DUF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os03g0119300 protein (Putative serine protease) (Subtilisin N-terminal Region family protein, expressed) Q8H047 Q8H047_ORYSJ Os03g0119300 LOC_Os03g02750 Os03g0119300 OJ1263H11.8 OSNPB_030119300 ENOG411DUF1 PCMP-E63 Q9C8L6 PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600, mitochondrial 80499 Pentatricopeptide repeat-containing protein At1g53600, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial RNA modification [GO:1900864] locus:2024897; AT1G53600 Pentatricopeptide repeat-containing protein Os08g0131000 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J023010C03, full insert sequence) (cDNA clone:J033024M15, full insert sequence) Q7EZR5 Q7EZR5_ORYSJ P0582D05.138 Os08g0131000 OSJNBb0009H02.8 OSNPB_080131000 ENOG411DUF0 F4IN63 F4IN63_ARATH Oxidoreductase, 2OG-Fe(II) oxygenase family protein 48484 Oxidoreductase, 2OG-Fe(II) oxygenase family protein locus:2066385; AT2G48080 )-oxidoreductase NA NA NA NA NA NA NA ENOG411DUF9 TIF3K1 Q9SZA3 EIF3K_ARATH Eukaryotic translation initiation factor 3 subunit K (eIF3k) (eIF-3 p25) FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03010}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 25728 Eukaryotic translation initiation factor 3 subunit K (eIF3k) (eIF-3 p25) cytosol [GO:0005829]; eukaryotic translation initiation factor 3 complex [GO:0005852]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; regulation of translational initiation [GO:0006446] locus:2119131; AT4G33250 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit K (eIF3k) (eIF-3 p25) Q94HF1 EIF3K_ORYSJ TIF3K1 Os03g0182700 LOC_Os03g08450 OsJ_09669 OSJNBa0032G08.17 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03010}. ENOG411DUF8 CW14 Q8LPT2,Q9SLT5 Q8LPT2_ARATH,Q9SLT5_ARATH At1g10410/F14N23_31 (CW14 protein (DUF1336)),CW14 protein (CW14 protein (DUF1336)) (T30E16.22) (Uncharacterized protein At1g59650) 54872,55339 At1g10410/F14N23_31 (CW14 protein (DUF1336)),CW14 protein (CW14 protein (DUF1336)) (T30E16.22) (Uncharacterized protein At1g59650) plasma membrane [GO:0005886] locus:2012848;,locus:2202877; AT1G10410,AT1G59650 DUF1336 domain containing protein expressed Os03g0693000 protein (cDNA, clone: J075153F01, full insert sequence) B7F9A7 B7F9A7_ORYSJ Os03g0693000 OSNPB_030693000 ENOG411DUFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 B3 domain-containing protein Os11g0197600 Q2R9D2 Y1176_ORYSJ Os11g0197600 LOC_Os11g09160 ENOG411DUFF MHJ24.13 Q9FMI5 Q9FMI5_ARATH At5g64156 (RNA methyltransferase family protein) (Uncharacterized protein At5g64150; MHJ24.13) 42173 At5g64156 (RNA methyltransferase family protein) (Uncharacterized protein At5g64150; MHJ24.13) mitochondrion [GO:0005739]; nucleic acid binding [GO:0003676]; protein methyltransferase activity [GO:0008276]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757] locus:2164396; AT5G64150 Protein methyltransferase hemK Modification methylase, HemK family protein, expressed (Os12g0612500 protein) Q2QM99 Q2QM99_ORYSJ LOC_Os12g41830 Os12g0612500 OSNPB_120612500 ENOG411DUFE Q9LFM3 Q9LFM3_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (At5g11340) (Separation anxiety protein-like) 18553 Acyl-CoA N-acyltransferases (NAT) superfamily protein (At5g11340) (Separation anxiety protein-like) NatA complex [GO:0031415]; N-acetyltransferase activity [GO:0008080]; histone acetylation [GO:0016573]; mitotic sister chromatid cohesion [GO:0007064]; N-terminal protein amino acid acetylation [GO:0006474] locus:2147997; AT5G11340 Acetyltransferase (GNAT) family Os01g0610400 protein (cDNA, clone: J065077N17, full insert sequence) A2ZVA8 A2ZVA8_ORYSJ Os01g0610400 OsJ_02570 OSNPB_010610400 ENOG411DUFD B6IDH6,A0A1P8BCZ9,A0A1P8BD05,A0A1P8BD02 B6IDH6_ARATH,A0A1P8BCZ9_ARATH,A0A1P8BD05_ARATH,A0A1P8BD02_ARATH At5g11840 (YCF36, putative (DUF1230)),YCF36, putative (DUF1230) 29307,21974,22857,21707 At5g11840 (YCF36, putative (DUF1230)),YCF36, putative (DUF1230) integral component of membrane [GO:0016021] locus:2142999; AT5G11840 Protein of unknown function (DUF1230) Os05g0539900 protein Q53WK2 Q53WK2_ORYSJ Os05g0539900 Os05g0539900 OSJNBa0052K01.20 OSNPB_050539900 ENOG411DUFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0143500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q9SNP3 Q9SNP3_ORYSJ Os06g0143500 OsJ_20095 OSJNBa0007O20.2 OSNPB_060143500 P0535G04.38 ENOG411DUFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) A0A0P0XDI5 A0A0P0XDI5_ORYSJ Os08g0237800 OSNPB_080237800 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DUFA MXK3.20 Q9LV81,A0A1P8BDC8,A0A1P8BDA7 BRTL3_ARATH,A0A1P8BDC8_ARATH,A0A1P8BDA7_ARATH Probable mitochondrial adenine nucleotide transporter BTL3 (Adenine nucleotide transporter BT1-like protein 3),Mitochondrial substrate carrier family protein FUNCTION: Probable mitochondrial adenylate carrier that catalyzes the transport of ATP, ADP and AMP. {ECO:0000250}. 46818,44157,33217 Probable mitochondrial adenine nucleotide transporter BTL3 (Adenine nucleotide transporter BT1-like protein 3),Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2177754; AT5G64970 Mitochondrial carrier protein Mitochondrial carrier protein, expressed (Os03g0191100 protein) (cDNA clone:J013064M16, full insert sequence) Q10QM8 Q10QM8_ORYSJ Os03g0191100 LOC_Os03g09110 Os03g0191100 OsJ_09726 OSNPB_030191100 ENOG411DUFN PPH Q9FFZ1,A0A1P8BAD5,A0A1P8BAE0 PPH_ARATH,A0A1P8BAD5_ARATH,A0A1P8BAE0_ARATH Pheophytinase, chloroplastic (EC 3.1.1.-) (Pheophytin pheophorbide hydrolase) (Protein CO-REGULATED WITH NYE1),Pheophytinase DISRUPTION PHENOTYPE: Stay-green phenotype during leaf senescence. Delayed chlorophyll breakdown during developmental senescence. {ECO:0000269|PubMed:19304936, ECO:0000269|PubMed:20537045}. Leaves stay green during senescence-S. Hortensteiner-2009 FUNCTION: Alpha/beta hydrolase dephytylating specifically the Mg-free chlorophyll pigment (pheophytin), yielding pheophorbide. No activity on chlorophyll. Belongs to the chlorophyll catabolic enzymes (CCEs). {ECO:0000269|PubMed:19304936, ECO:0000269|PubMed:20537045}. ARA:AT5G13800-MONOMER;MetaCyc:AT5G13800-MONOMER; 3.1.1.- 54572,44869,57343 Pheophytinase, chloroplastic (EC 3.1.1.-) (Pheophytin pheophorbide hydrolase) (Protein CO-REGULATED WITH NYE1),Pheophytinase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; pheophytinase activity [GO:0080124]; chlorophyll catabolic process [GO:0015996] DEVELOPMENTAL STAGE: Up-regulated during senescence. {ECO:0000269|PubMed:23200839}. locus:2159033; AT5G13800 hydrolase alpha beta fold family Hydrolase-like (Os06g0354700 protein) (cDNA clone:J023003K12, full insert sequence),Alpha/beta hydrolase-fold family protein (Hydrolase-like) (Os06g0354700 protein) (cDNA clone:J013075L23, full insert sequence),Os06g0354700 protein (Fragment) Q69XR2,Q69XR3,A0A0P0WWS9 Q69XR2_ORYSJ,Q69XR3_ORYSJ,A0A0P0WWS9_ORYSJ P0526E12.28-2 Os06g0354700 OSNPB_060354700,P0526E12.28-1 NYC3 Os06g0354700 OsJ_21285 OSNPB_060354700,Os06g0354700 OSNPB_060354700 ENOG411DUFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: polynucleotide kinase 3'-phosphatase Os08g0107100 protein (cDNA clone:J013001L19, full insert sequence),Os08g0107100 protein (Fragment) Q6ZD72,A0A0P0XBK5 Q6ZD72_ORYSJ,A0A0P0XBK5_ORYSJ Os08g0107100 Os08g0107100 OSNPB_080107100 P0450B04.17,Os08g0107100 OSNPB_080107100 ENOG411DUFK RABA1B Q39222 RAA1B_ARATH Ras-related protein RABA1b (AtRABA1b) (Ras-related protein Rab11) (AtRab11) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-5620916;R-ATH-8873719; 24020 Ras-related protein RABA1b (AtRABA1b) (Ras-related protein Rab11) (AtRab11) endosome [GO:0005768]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; hyperosmotic salinity response [GO:0042538]; intracellular protein transport [GO:0006886]; regulation of vesicle-mediated transport [GO:0060627] locus:2015576; AT1G16920 ras-related protein Ras-related protein RIC2,Os05g0516800 protein (Putative GTP-binding protein RIC2) (cDNA clone:001-042-H05, full insert sequence),GTP-binding protein GTP1 (Os01g0750000 protein) (cDNA clone:006-307-F01, full insert sequence),Os01g0750000 protein P40393,Q75II9,Q94J09,A0A0P0V883 RIC2_ORYSJ,Q75II9_ORYSJ,Q94J09_ORYSJ,A0A0P0V883_ORYSJ RIC2 SS230 Os06g0551400 LOC_Os06g35814 OsJ_21648 P0659D09.45,Os05g0516800 B1130G10.13 OsJ_19207 OSNPB_050516800,P0481E12.49-1 Os01g0750000 OsJ_03460 OSNPB_010750000,Os01g0750000 OSNPB_010750000 FUNCTION: Possesses GTPase activity. ENOG411DUFJ Q84R20,F4J8K5,A0A1I9LTD6 Q84R20_ARATH,F4J8K5_ARATH,A0A1I9LTD6_ARATH Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (Uncharacterized protein At3g11960),Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 151854,146367,150212 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (Uncharacterized protein At3g11960),Cleavage and polyadenylation specificity factor (CPSF) A subunit protein nucleus [GO:0005634]; nucleic acid binding [GO:0003676] locus:2081576; AT3G11960 cleavage and polyadenylation specificity factor Os07g0203700 protein (Fragment),Os07g0203800 protein (Fragment) Q0D7W9,Q0D7W8 Q0D7W9_ORYSJ,Q0D7W8_ORYSJ Os07g0203700 Os07g0203700 OSNPB_070203700,Os07g0203800 Os07g0203800 OSNPB_070203800 ENOG411DUFI EIN3,EIL1 O24606,Q9SLH0 EIN3_ARATH,EIL1_ARATH Protein ETHYLENE INSENSITIVE 3,ETHYLENE INSENSITIVE 3-like 1 protein More dramatic rescue of the ebf1-3 ebf2-3 phenotype. Seedlings grow rapidly after germination and eventually developed large rosette of true leaves. However the leaves are epinastic with elongated petioles and small leaf blades. Produced fertile but shorter flowers and viable seeds.,Almost complete rescue of the ebf1-3 ebf2-3 phenotype. Plants are phenotypically indistinguishable from the wild type.,eer4 partially restores the ethylene responsiveness to the ein3-1 mutant. Exposure of the eer4;ein3-1 mutant to saturating levels of ethylene results in moderate hypocotyl inhibition along with the generation of a pronounced apical hook.,Modest rescue of the ebf1-3 ebf2-3 phenotype. Seedlings continue grow and develop at a slow pace after germination. Cotyledons partially expanded and turned pale green. Stunted root densely covered with root hair. Plants never flowered or set seeds. Insensitive to ethylene-J. Ecker-1997,Insensitive to ethylene-R. Vierstra-2007 FUNCTION: Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.,FUNCTION: Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. MISCELLANEOUS: Loss-of-function mutations (ein3-1 and ein3-2) in the gene lead to the suppression of ethylene-mediated effects including gene expression, the triple response, cell growth inhibition, and accelerated senescence.,MISCELLANEOUS: Loss-of-function mutations (EIL1-1 and EIL1-2) in the gene show a weak ethylene-insensitive phenotype. 71421,66495 Protein ETHYLENE INSENSITIVE 3,ETHYLENE INSENSITIVE 3-like 1 protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; cellular response to iron ion [GO:0071281]; defense response to bacterium [GO:0042742]; ethylene-activated signaling pathway [GO:0009873]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; response to hypoxia [GO:0001666]; sugar mediated signaling pathway [GO:0010182]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; 2 iron, 2 sulfur cluster binding [GO:0051537]; oxidoreductase activity [GO:0016491]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion [GO:0071281]; defense response to bacterium [GO:0042742]; ethylene-activated signaling pathway [GO:0009873]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] locus:2091906;,locus:2059247; AT3G20770,AT2G27050 protein ethylene insensitive ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed (Ethylene-insensitive-3-like protein) (Os03g0324200 protein),ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed (Os03g0324300 protein) (cDNA clone:J033123C05, full insert sequence),Os03g0324200 protein (Os03g0324300 protein) (Fragment),Os03g0324300 protein,Os07g0272500 protein,Os02g0689132 protein Q8W3M0,Q10M41,A0A0P0VWX9,Q0DS96,A0A0N7KN89,A0A0N7KFW6 Q8W3M0_ORYSJ,Q10M41_ORYSJ,A0A0P0VWX9_ORYSJ,Q0DS96_ORYSJ,A0A0N7KN89_ORYSJ,A0A0N7KFW6_ORYSJ OsEIL1 Os03g0324200 LOC_Os03g20780 OSNPB_030324200,Os03g0324300 LOC_Os03g20790 OSNPB_030324300,Os03g0324300 Os03g0324200 OSNPB_030324200 OSNPB_030324300,Os03g0324300 OSNPB_030324300,Os07g0272500 OSNPB_070272500,Os02g0689132 OSNPB_020689132 ENOG411DUFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KINASE-like protein Os02g0655800 protein (cDNA clone:J033075D02, full insert sequence),Os04g0548400 protein (Fragment) Q6H6H7,Q0JB93 Q6H6H7_ORYSJ,Q0JB93_ORYSJ Os02g0655800 OJ1003_B06.33 OsJ_07785 OSNPB_020655800 P0519E06.17,Os04g0548400 Os04g0548400 OSNPB_040548400 ENOG411DUFW BAS1,2-Cys Prx B Q96291,Q9C5R8,A0A1P8BD74 BAS1A_ARATH,BAS1B_ARATH,A0A1P8BD74_ARATH 2-Cys peroxiredoxin BAS1, chloroplastic (2-Cys Prx A) (2-Cys peroxiredoxin A) (EC 1.11.1.15) (Thiol-specific antioxidant protein A),2-Cys peroxiredoxin BAS1-like, chloroplastic (2-Cys Prx B) (2-Cys peroxiredoxin B) (EC 1.11.1.15) (Thiol-specific antioxidant protein B),2-cysteine peroxiredoxin B FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. May be an antioxidant enzyme particularly in the developing shoot and photosynthesizing leaf. {ECO:0000269|PubMed:12084836}.,FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. May be an antioxidant enzyme particularly in the developing shoot and photosynthesizing leaf. {ECO:0000250|UniProtKB:Q96291}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this typical 2-Cys peroxiredoxin, C(R) is provided by the other dimeric subunit to form an intersubunit disulfide. The disulfide is subsequently reduced by thioredoxin CDSP32. {ECO:0000305|PubMed:12084836}.,MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this typical 2-Cys peroxiredoxin, C(R) is provided by the other dimeric subunit to form an intersubunit disulfide. The disulfide is subsequently reduced by thioredoxin CDSP32. {ECO:0000250|UniProtKB:Q96291}. ARA:AT3G11630-MONOMER;,ARA:AT5G06290-MONOMER; R-ATH-3299685;R-ATH-5628897;R-ATH-6798695; 1.11.1.15; 1.11.1.15 29092,29780,26712 2-Cys peroxiredoxin BAS1, chloroplastic (2-Cys Prx A) (2-Cys peroxiredoxin A) (EC 1.11.1.15) (Thiol-specific antioxidant protein A),2-Cys peroxiredoxin BAS1-like, chloroplastic (2-Cys Prx B) (2-Cys peroxiredoxin B) (EC 1.11.1.15) (Thiol-specific antioxidant protein B),2-cysteine peroxiredoxin B apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; stromule [GO:0010319]; thylakoid [GO:0009579]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454]; defense response to bacterium [GO:0042742]; response to cold [GO:0009409],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; stromule [GO:0010319]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454]; defense response to bacterium [GO:0042742]; response to cold [GO:0009409],cell [GO:0005623]; antioxidant activity [GO:0016209]; oxidoreductase activity [GO:0016491]; cell redox homeostasis [GO:0045454] locus:2080707;,locus:2164265; AT3G11630,AT5G06290 2-Cys peroxiredoxin 2-Cys peroxiredoxin BAS1, chloroplastic (EC 1.11.1.15) (Thiol-specific antioxidant protein),Os04g0416400 protein (Fragment) Q6ER94,A0A0P0WAE5 BAS1_ORYSJ,A0A0P0WAE5_ORYSJ BAS1 Os02g0537700 LOC_Os02g33450 OsJ_07037 OSJNBa0014M17.2 P0508B05.23,Os04g0416400 OSNPB_040416400 FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides (PubMed:16891402, PubMed:19345687). May be an antioxidant enzyme particularly in the developing shoot and photosynthesizing leaf (By similarity). {ECO:0000250|UniProtKB:Q96291, ECO:0000269|PubMed:16891402, ECO:0000269|PubMed:19345687}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this typical 2-Cys peroxiredoxin, C(R) is provided by the other dimeric subunit to form an intersubunit disulfide. The disulfide is subsequently reduced by thioredoxin. {ECO:0000250|UniProtKB:Q96291}. ENOG411DUFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromate transporter NA NA NA NA NA NA NA ENOG411DUFU CYP76C3 A0A1P8AXS9 A0A1P8AXS9_ARATH Cytochrome P450, family 76, subfamily C, polypeptide 3 40867 Cytochrome P450, family 76, subfamily C, polypeptide 3 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] cytochrome P450 Os03g0248300 protein (Fragment),Os10g0167250 protein (Fragment),Os08g0226166 protein Q0DTG9,A0A0P0XT48,A0A0P0XD48 Q0DTG9_ORYSJ,A0A0P0XT48_ORYSJ,A0A0P0XD48_ORYSJ Os03g0248300 Os03g0248300 OSNPB_030248300,Os10g0167250 OSNPB_100167250,Os08g0226166 OSNPB_080226166 ENOG411DUFS PLR3 O65679 PILR3_ARATH Probable pinoresinol-lariciresinol reductase 3 (AtPLR3) (EC 1.23.1.-) (lariciresinol reductase) cib1 or cib5 single mutant shows no obvious phenotype and cib1cib5 double mutant showed a mild but statistically significant delay of flowering under a photoperiodic inductive condition (plants were grown in short-day photoperiod (9h light/15h dark) for 20 days and transfered to long-day photoperiod (16h light/ 8h dark) for 4 days and removed back to short-day to continue grow until flowering. FUNCTION: Probable reductase that might be involved in the reduction of lariciresinol into secoisolariciresinol. In most plant species, a single enzyme is able to reduce both pinoresinol and lariciresinol efficiently while in Arabidopsis, PRR1 and PRR2 show a strict substrate selectivity for pinoresinol. ARA:AT4G34540-MONOMER; 1.23.1.- 34071 Probable pinoresinol-lariciresinol reductase 3 (AtPLR3) (EC 1.23.1.-) (lariciresinol reductase) pinoresinol reductase activity [GO:0010283] locus:2139494; AT4G34540 Isoflavone reductase Os02g0705000 protein (Putative phenylcoumaran benzylic ether reductase PT1) (cDNA clone:001-206-C03, full insert sequence) (cDNA clone:006-304-A04, full insert sequence) Q6YVH7 Q6YVH7_ORYSJ Os02g0705000 OsJ_08081 OSNPB_020705000 P0680A05.1 P0724B10.42 ENOG411DUFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411DUFQ SBT4.15 Q9LZS6,A0A1P8BDZ1 SBT4F_ARATH,A0A1P8BDZ1_ARATH Subtilisin-like protease SBT4.15 (EC 3.4.21.-) (Subtilase subfamily 4 member 15) (AtSBT4.15),Subtilisin-like serine endopeptidase family protein 3.4.21.- 82595,61271 Subtilisin-like protease SBT4.15 (EC 3.4.21.-) (Subtilase subfamily 4 member 15) (AtSBT4.15),Subtilisin-like serine endopeptidase family protein extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252],serine-type endopeptidase activity [GO:0004252] locus:2144583; AT5G03620 Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411DUFP PCN Q8RXU6,Q8VYS4,A8MRY7 Q8RXU6_ARATH,Q8VYS4_ARATH,A8MRY7_ARATH Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At4g07410),Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At1g27470),Transducin family protein / WD-40 repeat family protein FUNCTION: Involved in auxin signaling pathway. Required for embryo development and meristem organization. Functions in the auxin pathway, integrating auxin signaling in the organization and maintenance of the shoot apical meristem (SAM) and root apical meristem (RAM). {ECO:0000269|PubMed:22158464}. R-ATH-6791226; 90270,89783,78024 Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At4g07410),Transducin family protein / WD-40 repeat family protein (Uncharacterized protein At1g27470),Transducin family protein / WD-40 repeat family protein nucleus [GO:0005634]; embryo development ending in seed dormancy [GO:0009793]; lateral root formation [GO:0010311]; leaf development [GO:0048366]; leaf vascular tissue pattern formation [GO:0010305]; meristem growth [GO:0035266]; meristem maintenance [GO:0010073]; post-embryonic plant organ development [GO:0090696]; regulation of auxin polar transport [GO:2000012]; root meristem growth [GO:0010449] locus:2124377;,locus:2015909; AT4G07410,AT1G27470 U3 small nucleolar RNA-associated protein Os03g0735100 protein (cDNA, clone: J075009F20, full insert sequence) B7F947 B7F947_ORYSJ Os03g0735100 OsJ_12479 OSNPB_030735100 ENOG411DUFZ TIP2-2,TIP2-3 Q41975,Q9FGL2 TIP22_ARATH,TIP23_ARATH Probable aquaporin TIP2-2 (Tonoplast intrinsic protein 2-2) (AtTIP2;2),Aquaporin TIP2-3 (Tonoplast intrinsic protein 2-3) (AtTIP2;3) FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}.,FUNCTION: Transports methylammonium or ammonium in yeast cells, preferentially at high medium pH. May participate in vacuolar compartmentation and detoxification of ammonium. {ECO:0000269|PubMed:15665250}. R-ATH-432047; 25080,25245 Probable aquaporin TIP2-2 (Tonoplast intrinsic protein 2-2) (AtTIP2;2),Aquaporin TIP2-3 (Tonoplast intrinsic protein 2-3) (AtTIP2;3) central vacuole [GO:0042807]; chloroplast [GO:0009507]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220],central vacuole [GO:0042807]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; methylammonium transmembrane transporter activity [GO:0015200]; water channel activity [GO:0015250] TISSUE SPECIFICITY: Expressed above groung and in roots. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:11806824}. locus:2130883;,locus:2168953; AT4G17340,AT5G47450 Aquaporin Probable aquaporin TIP2-1 (Tonoplast intrinsic protein 2-1) (OsTIP2;1),Os02g0658100 protein (Fragment),Os04g0550900 protein Q7XA61,A0A0P0VML5,A0A0P0WDK9 TIP21_ORYSJ,A0A0P0VML5_ORYSJ,A0A0P0WDK9_ORYSJ TIP2-1 TIP2 W950ERIPDM Os02g0658100 LOC_Os02g44080 OJ1112_F09.18 OsJ_007553 P0519E06.48,Os02g0658100 OSNPB_020658100,Os04g0550900 OSNPB_040550900 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DUFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vicilin-like antimicrobial peptides 63 kDa globulin-like protein (allergen Ory s GLP63) Q75GX9 GLB63_ORYSJ Os03g0663800 LOC_Os03g46100 OSJNBa0034D21.12 FUNCTION: Seed storage protein. {ECO:0000305}. ENOG411DUFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cotyledon development Homeobox-leucine zipper protein ROC7 (GLABRA 2-like homeobox protein 7) (HD-ZIP protein ROC7) (Homeodomain transcription factor ROC7) (Protein RICE OUTERMOST CELL-SPECIFIC 7),Os08g0136100 protein A3BPF2,B9FYY9 ROC7_ORYSJ,B9FYY9_ORYSJ ROC7 GL2-7 Os08g0136100 Os08g0136000 LOC_Os08g04190 OJ1613_G04.7 OsJ_024924 P0680F05.46,Os08g0136100 OsJ_25963 OSNPB_080136100 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E4EP Q9M9Y6,F4HNT3 Q9M9Y6_ARATH,F4HNT3_ARATH F4H5.12 protein (Putative RNA polymerase) (RNA polymerase Rpb7 N-terminal domain-containing protein),RNA polymerase Rpb7 N-terminal domain-containing protein R-ATH-1834949; 23036,21284 F4H5.12 protein (Putative RNA polymerase) (RNA polymerase Rpb7 N-terminal domain-containing protein),RNA polymerase Rpb7 N-terminal domain-containing protein DNA-directed RNA polymerase III complex [GO:0005666]; nucleus [GO:0005634]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; RNA metabolic process [GO:0016070]; RNA splicing [GO:0008380]; transcription initiation from RNA polymerase III promoter [GO:0006384],DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] locus:2033077; AT1G06790 DNA-directed RNA polymerase III Os07g0477000 protein (Putative DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide) (cDNA clone:006-211-B10, full insert sequence),Os08g0290900 protein (Fragment),Os03g0609200 protein (Fragment) Q84NN3,A0A0P0XEB7,A0A0P0W0R9 Q84NN3_ORYSJ,A0A0P0XEB7_ORYSJ,A0A0P0W0R9_ORYSJ P0640E12.113 Os07g0477000 OSNPB_070477000,Os08g0290900 OSNPB_080290900,Os03g0609200 OSNPB_030609200 ENOG411E4EA Q9SK23,Q9C9E9 Q9SK23_ARATH,Q9C9E9_ARATH DUF1677 family protein (DUF1677) (Uncharacterized protein At2g09970),At1g72510 (DUF1677 family protein (DUF1677)) (Uncharacterized protein At1g72510) (Uncharacterized protein T10D10.2) 18699,18365 DUF1677 family protein (DUF1677) (Uncharacterized protein At2g09970),At1g72510 (DUF1677 family protein (DUF1677)) (Uncharacterized protein At1g72510) (Uncharacterized protein T10D10.2) locus:2052230;,locus:2193947; AT2G09970,AT1G72510 Protein of unknown function (DUF1677) NA NA NA NA NA NA NA ENOG411EA1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRG1-like NA NA NA NA NA NA NA ENOG411EA1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EA1X Q9SD24 Y3122_ARATH WEB family protein At3g51220 21487 WEB family protein At3g51220 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2080998; AT3G51220 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411E5U1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411E309 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0753800 protein (cDNA clone:J033033I01, full insert sequence) Q5JMM0 Q5JMM0_ORYSJ Os01g0753800 Os01g0753800 OsJ_03488 OSNPB_010753800 P0435B05.40 P0503C12.12 ENOG411E53B SUS1 Q6NQ54,B3H7K2 SUS1_ARATH,B3H7K2_ARATH Transcription and mRNA export factor SUS1,Transcription/mRNA export factor FUNCTION: Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (By similarity). {ECO:0000250}. 13107,12392 Transcription and mRNA export factor SUS1,Transcription/mRNA export factor DUBm complex [GO:0071819]; nuclear pore [GO:0005643]; SAGA complex [GO:0000124]; chromatin binding [GO:0003682]; transcription coactivator activity [GO:0003713]; histone deubiquitination [GO:0016578]; poly(A)+ mRNA export from nucleus [GO:0016973]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021] locus:2091995; AT3G27100 enhancer of yellow 2 transcription factor Transcription and mRNA export factor ENY2 (Enhancer of yellow 2 transcription factor homolog) Q0JGJ6 Q0JGJ6_ORYSJ Os01g0920200 Os01g0920200 OSNPB_010920200 FUNCTION: Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery. {ECO:0000256|HAMAP-Rule:MF_03046}. ENOG411E5U2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E30H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family (UPF0220) Os02g0566900 protein (cDNA clone:J023003M06, full insert sequence) Q6YTI5 Q6YTI5_ORYSJ Os02g0566900 Os02g0566900 OSNPB_020566900 P0020D05.16 ENOG411E30J PRA1B3,PRA1B2,PRA1B1,PRA1.B3 Q9FLB6,Q9SIY7,Q9LYN0,A0A1P8B9G8,A0A1P8B9H5,A0A1P8B9I5 PR1B3_ARATH,PR1B2_ARATH,PR1B1_ARATH,A0A1P8B9G8_ARATH,A0A1P8B9H5_ARATH,A0A1P8B9I5_ARATH PRA1 family protein B3 (AtPRA1.B3) (Prenylated Rab acceptor 2),PRA1 family protein B2 (AtPRA1.B2),PRA1 family protein B1 (AtPRA1.B1) (Prenylated Rab acceptor 6),PRA1 family protein FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}.,FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. 23529,23159,22618,31244,28313,29345 PRA1 family protein B3 (AtPRA1.B3) (Prenylated Rab acceptor 2),PRA1 family protein B2 (AtPRA1.B2),PRA1 family protein B1 (AtPRA1.B1) (Prenylated Rab acceptor 6),PRA1 family protein endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; transport [GO:0006810] TISSUE SPECIFICITY: Expressed in hypocotyls and shoot apex. {ECO:0000269|PubMed:18583532}. locus:2153589;,locus:2063120;,locus:2078371; AT5G05380,AT2G40380,AT3G56110 prenylated rab acceptor NA NA NA NA NA NA NA ENOG411E53P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E53Z AtRPAC14,RPC14 Q42483,A8MRK9 Q42483_ARATH,A8MRK9_ARATH DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14) (Putative DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)) (Putative DNA-directed RNA polymerase 14 kDa subunit AtRPAC14) (RNA polymerase I(A) and III(C) 14 kDa subunit) (RNApolymerase 14 kDa subunit),RNApolymerase 14 kDa subunit 14079,16448 DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14) (Putative DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)) (Putative DNA-directed RNA polymerase 14 kDa subunit AtRPAC14) (RNA polymerase I(A) and III(C) 14 kDa subunit) (RNApolymerase 14 kDa subunit),RNApolymerase 14 kDa subunit DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription, DNA-templated [GO:0006351],DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase III complex [GO:0005666]; protein dimerization activity [GO:0046983]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase III promoter [GO:0006383] locus:2043092; AT2G29540 DNA-directed RNA polymerases I and III subunit Os12g0194700 protein (RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed) (cDNA clone:J033106A07, full insert sequence),Expressed protein (Os11g0218100 protein) (cDNA clone:J023065O17, full insert sequence) Q2QWI0,Q2R8T1 Q2QWI0_ORYSJ,Q2R8T1_ORYSJ LOC_Os12g09280 Os12g0194700 OsJ_35508 OSNPB_120194700,Os11g0218100 LOC_Os11g11110 OSNPB_110218100 ENOG411E30T SHH1 Q9XI47,A0A1P8AS73 SHH1_ARATH,A0A1P8AS73_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1 (DNA-binding transcription factor 1),SAWADEE HOMEODOMAIN protein DISRUPTION PHENOTYPE: Loss of DRM2 controlled DNA methylation, but no effect on CMT3 or MET1 controlled methylation. {ECO:0000269|PubMed:21811420}. FUNCTION: Involved in RNA-directed DNA methylation (RdDM). Required for the silencing of some endogenous RdDM targets and accumulation of 24-nt siRNAs, but not for the production of Pol V-dependent transcripts. Functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways. Required for both maintenance and de-novo DNA methylation. Plays a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. {ECO:0000269|PubMed:21811420, ECO:0000269|PubMed:22064704, ECO:0000269|PubMed:23636332, ECO:0000269|PubMed:23637343}. MISCELLANEOUS: Associates in vivo with Pol IV but not with Pol V (PubMed:23637343) and this interaction is not dependent on its H3K9me binding activity (PubMed:23636332). Glu-130 and Asp-141 interact with the H3K4 side chain while the H3K9me1/2/3 side chains insert into a hydrophobic aromatic cage formed by Tyr-140, Phe-162 and Phe-165 (PubMed:23636332). {ECO:0000305|PubMed:23636332, ECO:0000305|PubMed:23637343}. 29506,29994 Protein SAWADEE HOMEODOMAIN HOMOLOG 1 (DNA-binding transcription factor 1),SAWADEE HOMEODOMAIN protein nucleus [GO:0005634]; chromatin binding [GO:0003682]; metal ion binding [GO:0046872]; DNA methylation [GO:0006306]; gene silencing by RNA [GO:0031047]; methylation-dependent chromatin silencing [GO:0006346],chromatin binding [GO:0003682]; DNA binding [GO:0003677] locus:1005716727; AT1G15215 NA NA NA NA NA NA NA NA ENOG411E30W Q6NLR3 Q6NLR3_ARATH At2g44410 (RING/U-box superfamily protein) 45836 At2g44410 (RING/U-box superfamily protein) Derlin-1 retrotranslocation complex [GO:0036513]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ER-associated misfolded protein catabolic process [GO:0071712]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2050533; AT2G44410 RING NA NA NA NA NA NA NA ENOG411E30P Q9T0A8,F4JPE5 Q9T0A8_ARATH,F4JPE5_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At4g23930),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 20233,17149 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At4g23930),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family integral component of membrane [GO:0016021] locus:2138136; AT4G23930 Late embryogenesis abundant protein Os05g0238400 protein (cDNA clone:J033044N23, full insert sequence) Q60ET9 Q60ET9_ORYSJ Os05g0238400 OJ1122_B08.9 OSNPB_050238400 ENOG411E30R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) RNA-binding protein Y14B (OsY14b) (RNA-binding protein 8A) Q6ATR0 Y14B_ORYSJ Y14B RBM8 Os03g0809900 LOC_Os03g59550 OSJNBa0028F23.11 FUNCTION: Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). The MAGO-Y14 heterodimer inhibits the ATPase activity of EIF4A3, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The MAGO-Y14 heterodimer interacts with the EJC key regulator PYM leading to EJC disassembly in the cytoplasm (By similarity). EJC core heterodimers play essential roles in plant growth and development, and pollen and seed development (PubMed:25230811, PubMed:24820023). The MAGO-Y14 heterodimer selectively binds to the UDT1 (UNDEVELOPED TAPETUM 1) pre-mRNA transcript and regulates the splicing of UDT1, a key regulator in stamen development (PubMed:24820023). {ECO:0000250|UniProtKB:Q9Y5S9, ECO:0000269|PubMed:24820023, ECO:0000269|PubMed:25230811}. ENOG411E30S HSFA9 Q9LVW2 HSFA9_ARATH Heat stress transcription factor A-9 (AtHsfA9) (AtHsf-21) FUNCTION: Seed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}. R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 38146 Heat stress transcription factor A-9 (AtHsfA9) (AtHsf-21) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Starts to be expressed in seeds from 18 days after pollination (DAP) to reach the highest expression in dry seeds. Expression is strongly reduced after only 2 hours of seed imbibition, declines drastically after 6 hours, but can be detected at a very low level even after 10 hours. {ECO:0000269|PubMed:17220197}. locus:2166562; AT5G54070 Heat stress transcription factor NA NA NA NA NA NA NA ENOG411DUXX F4J556 F4J556_ARATH TRAF-like family protein 35127 TRAF-like family protein locus:2089045; AT3G17380 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411DUXU M3E9.200 Q93XY7,F4JUX9 Q93XY7_ARATH,F4JUX9_ARATH Antitermination NusB domain-containing protein (At4g26370) (Uncharacterized protein At4g26370; M3E9.200),Antitermination NusB domain-containing protein 33462,28159 Antitermination NusB domain-containing protein (At4g26370) (Uncharacterized protein At4g26370; M3E9.200),Antitermination NusB domain-containing protein chloroplast [GO:0009507]; RNA binding [GO:0003723]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355],RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355] locus:2131428; AT4G26370 antitermination NusB domain-containing protein Antitermination NusB domain-containing protein, putative, expressed (Os03g0656900 protein) Q7Y092 Q7Y092_ORYSJ OSJNBa0075A22.21 LOC_Os03g45400 Os03g0656900 OSNPB_030656900 ENOG411EMII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FYRC NA NA NA NA NA NA NA ENOG411EMIH Q0WKW1 Q0WKW1_ARATH PHD finger family protein (Uncharacterized protein At3g08020) 86272 PHD finger family protein (Uncharacterized protein At3g08020) metal ion binding [GO:0046872] locus:2077457; AT3G08020 PHD NA NA NA NA NA NA NA ENOG411EMIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411EMIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCT NA NA NA NA NA NA NA ENOG411EMIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA leucine-rich repeat receptor-like kinase Os02g0153900 protein (Putative Phytosulfokine receptor) (cDNA clone:J013047P09, full insert sequence),Os02g0153500 protein (Putative Phytosulfokine receptor),Os02g0154200 protein (Putative Phytosulfokine receptor) Q67IT2,Q67IT6,Q67IS9 Q67IT2_ORYSJ,Q67IT6_ORYSJ,Q67IS9_ORYSJ Os02g0153900 Os02g0153900 OSJNBb0032C09.5 OSNPB_020153900 P0463E12.23,Os02g0153500 Os02g0153500 OsJ_05416 OSNPB_020153500 P0463E12.18,Os02g0154200 OSJNBb0032C09.10 OSNPB_020154200 P0463E12.28 ENOG411EMID Q680C0,Q9SJ35,A8MQF2 GDL62_ARATH,Q9SJ35_ARATH,A8MQF2_ARATH GDSL esterase/lipase At4g10955 (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein (At2g05260) (Expressed protein) (Uncharacterized protein At2g05260),Alpha/beta-Hydrolases superfamily protein 3.1.1.- 39474,40131,32973 GDSL esterase/lipase At4g10955 (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein (At2g05260) (Expressed protein) (Uncharacterized protein At2g05260),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042],hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:505006437;,locus:2051289; AT4G10955,AT2G05260 Lipase (class 3) NA NA NA NA NA NA NA ENOG411EMIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others Os04g0110600 protein Q0JFE3 Q0JFE3_ORYSJ Os04g0110600 Os04g0110600 OSNPB_040110600 ENOG411EMIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others NA NA NA NA NA NA NA ENOG411DUXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os08g0487500 protein (Zinc finger protein) (Zinc finger protein family-like) (cDNA clone:J013059I17, full insert sequence) Q6ZCW1 Q6ZCW1_ORYSJ Os08g0487500 Os08g0487500 OSNPB_080487500 P0028A08.16 P0481F05.37 ENOG411DUXI GAUT8 Q9LSG3 GAUT8_ARATH Galacturonosyltransferase 8 (EC 2.4.1.-) (Glycosyltransferase QUASIMODO1) DISRUPTION PHENOTYPE: Embryo lethality. Reduced galacturonic acid and xylose content in cell wall. Altered cell wall porosity. Reduced vascular bundle. {ECO:0000269|PubMed:16059719, ECO:0000269|PubMed:17996933, ECO:0000269|PubMed:19825675}. Contains less homogalacturonan than wildtype.,Dwarf plant with reduced cell adhesion and 25% reduction in levels of galacturonate in its leaves.,Leaves are wilted after 30 min of dehydration under a laminar air unit.,Mutant displays a variable phenotype when grown in the light ranging from an almost normal morphology (with protuberances barely visible and restricted to cotyledons or hypocotyls) to a strongly perturbed development in which cells detached from all aerial organs.,Smaller rosette leaves larger cauline leaves short inflorescence stems. Correlation of visible phenotype with reduction in homogalacturonan biosynthesis. Abnormally formed vascular bundles are reduced in size.,The leaf color of mutants grown in soil was duller than that of the wild type; overall the mutant plants were less rigid.,Severe dwarf with misshapen morphology.,Stronger phenotype than qua1-1. Dwarf; Reduced cell adhesion; Low pectin levels-H. Truong-2002 FUNCTION: Alpha-1-4-D-galacturonosyltransferase involved in homogalacturonan (HGA) synthesis, a class of pectin which plays a role in cell adhesion. {ECO:0000269|PubMed:16059719}. PATHWAY: Glycan metabolism; pectin biosynthesis. MetaCyc:MONOMER-2483; 2.4.1.- 64368 Galacturonosyltransferase 8 (EC 2.4.1.-) (Glycosyltransferase QUASIMODO1) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell adhesion [GO:0007155]; homogalacturonan biosynthetic process [GO:0010289]; pectin biosynthetic process [GO:0045489] DEVELOPMENTAL STAGE: Expressed at both the vegetative and floral stages. TISSUE SPECIFICITY: Expressed in roots, inflorescences, flowers, siliques, leaves and stems. Localized to discrete cells of the vascular tissue and subepidermal layers. {ECO:0000269|PubMed:16059719, ECO:0000269|PubMed:19825675}. locus:2090210; AT3G25140 Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-),Os07g0296100 protein (Fragment) Q6K3N8,A0A0P0X506 Q6K3N8_ORYSJ,A0A0P0X506_ORYSJ Os02g0498700 OsJ_06821 OSJNBb0021C10.5 OSNPB_020498700,Os07g0296100 OSNPB_070296100 ENOG411EMIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain OSJNBa0004N05.16 protein (Os04g0512400 protein) (cDNA clone:J033122C24, full insert sequence) Q7XPZ2 Q7XPZ2_ORYSJ Os04g0512400 OsJ_15441 OSJNBa0004N05.16 OSNPB_040512400 ENOG411EMIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others Os02g0203700 protein (Zinc finger protein) (Zinc finger transcription factor ZFP30) (cDNA clone:006-203-G02, full insert sequence) (cDNA clone:006-309-A05, full insert sequence) Q6Z6E6 Q6Z6E6_ORYSJ Os02g0203700 Os02g0203700 OJ1135_F06.29 OsJ_05812 OSNPB_020203700 P0544H11.11 ENOG411EMIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DUXH OVA7,SRS Q8RWT8,A0A1P8ASF6,A0A1P8ASJ5,A0A1P8ASH4,F4IAJ4 SYSM_ARATH,A0A1P8ASF6_ARATH,A0A1P8ASJ5_ARATH,A0A1P8ASH4_ARATH,F4IAJ4_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.11) (AtSRS) (Protein OVULE ABORTION 7) (Seryl-tRNA synthetase) (SerRS) (Seryl-tRNA(Ser/Sec) synthetase),Seryl-tRNA synthetase DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. Ovule abortion; Gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 FUNCTION: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (By similarity). {ECO:0000250|UniProtKB:P0A8L1}. PATHWAY: Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1. ARA:AT1G11870-MONOMER; 6.1.1.11 57352,51534,50061,42160,45111 Serine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.11) (AtSRS) (Protein OVULE ABORTION 7) (Seryl-tRNA synthetase) (SerRS) (Seryl-tRNA(Ser/Sec) synthetase),Seryl-tRNA synthetase chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; serine-tRNA ligase activity [GO:0004828]; chloroplast organization [GO:0009658]; mitochondrion organization [GO:0007005]; plant ovule development [GO:0048481]; selenocysteinyl-tRNA(Sec) biosynthetic process [GO:0097056]; seryl-tRNA aminoacylation [GO:0006434],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; serine-tRNA ligase activity [GO:0004828]; seryl-tRNA aminoacylation [GO:0006434] locus:2008865; AT1G11870 seryl-trna synthetase Os11g0610900 protein (Seryl-tRNA synthetase family protein, expressed),Os11g0610900 protein Q2R1C1,A0A0P0Y4A7 Q2R1C1_ORYSJ,A0A0P0Y4A7_ORYSJ Os11g0610900 LOC_Os11g39670 Os11g0610900 OSNPB_110610900,Os11g0610900 OSNPB_110610900 ENOG411EK03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Two-component response regulator-like PRR37 (Protein DAYS TO HEADING 7) (Protein HEADING DATE 2) (Pseudo-response regulator 37) (OsPRR37),Os07g0695100 protein (Fragment),Os03g0284100 protein (Fragment),Os03g0284100 protein Q0D3B6,A0A0P0XAI5,A0A0P0VWU7,A0A0P0VWW5 PRR37_ORYSJ,A0A0P0XAI5_ORYSJ,A0A0P0VWU7_ORYSJ,A0A0P0VWW5_ORYSJ PRR37 DTH7 HD2 Os07g0695100 LOC_Os07g49460 P0627E10.21,Os07g0695100 OSNPB_070695100,Os03g0284100 OSNPB_030284100 FUNCTION: Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering. Controls flowering time by negatively regulating the expression of HD3A (PubMed:23713079, PubMed:25378698). Acts downstream of the phytochrome B to repress the expression of EHD1, an activator of the flowering promoter genes HD3A and RFT1 (PubMed:25378698). Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock (By similarity). {ECO:0000250|UniProtKB:Q9LKL2, ECO:0000269|PubMed:23713079, ECO:0000269|PubMed:25378698}. ENOG411EMI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: receptor kinase Os04g0505200 protein,OSJNBa0014K14.21 protein (OSJNBb0116K07.13 protein) (Os04g0505200 protein) (cDNA clone:001-046-F07, full insert sequence) (cDNA clone:J013075O17, full insert sequence) Q0JBX3,Q7F8X9 Q0JBX3_ORYSJ,Q7F8X9_ORYSJ Os04g0505200 Os04g0505200 OSNPB_040505200,Os04g0505200 OSJNBa0014K14.21 OSJNBb0116K07.13 OSNPB_040505200 ENOG411EMI8 Q9M9T9 Q9M9T9_ARATH F6A14.21 protein (HNH endonuclease domain-containing protein) (Uncharacterized protein At1g18680) (Uncharacterized protein At1g18680/F6A14_21) 20291 F6A14.21 protein (HNH endonuclease domain-containing protein) (Uncharacterized protein At1g18680) (Uncharacterized protein At1g18680/F6A14_21) endonuclease activity [GO:0004519] locus:2035020; AT1G18680 HNH endonuclease NA NA NA NA NA NA NA ENOG411EMI1 PUB16 Q9LZW3 PUB16_ARATH U-box domain-containing protein 16 (EC 2.3.2.27) (Plant U-box protein 16) (RING-type E3 ubiquitin transferase PUB16) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 73600 U-box domain-containing protein 16 (EC 2.3.2.27) (Plant U-box protein 16) (RING-type E3 ubiquitin transferase PUB16) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; response to chitin [GO:0010200] locus:2181077; AT5G01830 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q8LRC7 Q8LRC7_ORYSJ Os01g0823900 OsJ_03912 OSNPB_010823900 P0031D02.21 ENOG411EMI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain NA NA NA NA NA NA NA ENOG411EMI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S27a NA NA NA NA NA NA NA ENOG411EMI2 RPS27AA,RPS27AC,RPS27AB P59271,P59233,P59232 R27AA_ARATH,R27AC_ARATH,R27AB_ARATH Ubiquitin-40S ribosomal protein S27a-1 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-1],Ubiquitin-40S ribosomal protein S27a-3 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-3],Ubiquitin-40S ribosomal protein S27a-2 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-2] FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: Ribosomal protein RSP27a-1 is a component of the 40S subunit of the ribosome.,FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: Ribosomal protein RSP27a-3 is a component of the 40S subunit of the ribosome.,FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: Ribosomal protein RSP27a-2 is a component of the 40S subunit of the ribosome. MISCELLANEOUS: Ubiquitin is encoded by 16 different genes. Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to a ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. 17672,17797,17812 Ubiquitin-40S ribosomal protein S27a-1 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-1],Ubiquitin-40S ribosomal protein S27a-3 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-3],Ubiquitin-40S ribosomal protein S27a-2 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-2] cytosolic small ribosomal subunit [GO:0022627]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2028005;,locus:2098003;,locus:2041459; AT1G23410,AT3G62250,AT2G47110 Ubiquitin-40S ribosomal protein NA NA NA NA NA NA NA ENOG411EMI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S27a Ubiquitin-40S ribosomal protein S27a-2 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-2] P51431 R27AB_ORYSJ RPS27AB UBQ6 Os05g0160200 LOC_Os05g06770 OsJ_17209 OSJNBa0017J22.14 OSJNBa0034O12.6 FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: Ribosomal protein RSP27a-2 is a component of the 40S subunit of the ribosome. MISCELLANEOUS: Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to an ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. ENOG411EMI7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DUX9 DEGP8,DEG8 Q9LU10,F4KFV6 DEGP8_ARATH,F4KFV6_ARATH Protease Do-like 8, chloroplastic (EC 3.4.21.-),Trypsin family protein with PDZ domain-containing protein Inhibited growth when exposed to high light. Some leaves exhibited symptoms of yellowing. Slightly slower growth; Small rosette under high light-L. Zhang-2007 FUNCTION: Probable serine protease. ARA:GQT-1789-MONOMER; 3.4.21.- 47493,46259 Protease Do-like 8, chloroplastic (EC 3.4.21.-),Trypsin family protein with PDZ domain-containing protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; peptidase activity [GO:0008233]; serine-type endopeptidase activity [GO:0004252]; photosystem II repair [GO:0010206]; proteolysis [GO:0006508],serine-type endopeptidase activity [GO:0004252] locus:2151916; AT5G39830 protease Do-like 8 Os04g0459900 protein (cDNA clone:J013041F13, full insert sequence) B7EBF9 B7EBF9_ORYSJ Os04g0459900 Os04g0459900 OSNPB_040459900 ENOG411DUX8 RER4 Q94CJ5 RER4_ARATH Protein RETICULATA-RELATED 4, chloroplastic DISRUPTION PHENOTYPE: Pale interveinal phenotype due to marked reduction in the density of mesophyll cells in interveinal regions of leaves. {ECO:0000269|PubMed:23596191}. FUNCTION: May play a role in leaf development. {ECO:0000305|PubMed:23596191}. 41323 Protein RETICULATA-RELATED 4, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; multicellular organism development [GO:0007275] locus:505006615; AT5G12470 Domain of unknown function (DUF3411) Os05g0388600 protein (cDNA clone:001-204-F12, full insert sequence),Os01g0957200 protein Q60E58,Q5JK51 Q60E58_ORYSJ,Q5JK51_ORYSJ Os05g0388600 OsJ_18403 OSJNBa0073E05.18 OSNPB_050388600,Os01g0957200 Os01g0957200 OJ1294_F06.15 OsJ_04819 OSNPB_010957200 ENOG411EK0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA polyneuridine-aldehyde esterase-like NA NA NA NA NA NA NA ENOG411EK0C RIBF2 Q8VZR0,F4KB09 RIBF2_ARATH,F4KB09_ARATH FAD synthetase 2, chloroplastic (EC 2.7.7.2) (AtRibF2) (FAD pyrophosphorylase 2) (FMN adenylyltransferase 2) (Flavin adenine dinucleotide synthase 2),Nucleotidylyl transferase superfamily protein FUNCTION: Catalyzes the adenylation of flavin mononucleotide (FMN) to form flavin adenine dinucleotide (FAD) coenzyme. {ECO:0000269|PubMed:18713732}. PATHWAY: Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1. ARA:GQT-1637-MONOMER; 2.7.7.2; 2.7.7.2 40528,38649 FAD synthetase 2, chloroplastic (EC 2.7.7.2) (AtRibF2) (FAD pyrophosphorylase 2) (FMN adenylyltransferase 2) (Flavin adenine dinucleotide synthase 2),Nucleotidylyl transferase superfamily protein chloroplast [GO:0009507]; ATP binding [GO:0005524]; FMN adenylyltransferase activity [GO:0003919]; FAD biosynthetic process [GO:0006747]; riboflavin biosynthetic process [GO:0009231],FMN adenylyltransferase activity [GO:0003919]; riboflavin biosynthetic process [GO:0009231] locus:2150813; AT5G08340 Inherit from COG: isoprenylcysteine carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411E534 AtXYP4,XYP2 Q8VYI9,Q9ZQI8,Q8LD67,Q9FY78,A0A1P8AZB0,A0A1P8BAC8 NLTL5_ARATH,NLTL2_ARATH,Q8LD67_ARATH,Q9FY78_ARATH,A0A1P8AZB0_ARATH,A0A1P8BAC8_ARATH Non-specific lipid-transfer protein-like protein At5g64080,Non-specific lipid-transfer protein-like protein At2g13820,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein) (Xylogen like protein 4),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 17972,16816,13286,16164,18200,15996 Non-specific lipid-transfer protein-like protein At5g64080,Non-specific lipid-transfer protein-like protein At2g13820,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein) (Xylogen like protein 4),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; lipid binding [GO:0008289]; lipid transport [GO:0006869],anchored component of plasma membrane [GO:0046658]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; lipid transport [GO:0006869],lipid binding [GO:0008289]; lipid transport [GO:0006869],anchored component of membrane [GO:0031225]; lipid binding [GO:0008289]; lipid transport [GO:0006869],integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2164411;,locus:2043750;,locus:2184817; AT5G64080,AT2G13820,AT5G09370 Non-specific lipid-transfer protein-like protein Os03g0192600 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (cDNA clone:006-308-B10, full insert sequence) Q10QL0 Q10QL0_ORYSJ Os03g0192600 LOC_Os03g09230 Os03g0192600 OSNPB_030192600 ENOG411EK0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E539 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Glycine-rich protein-like (Os06g0216700 protein) (cDNA clone:001-015-C08, full insert sequence) (cDNA clone:J033037B14, full insert sequence) Q69TG9 Q69TG9_ORYSJ Os06g0216700 OsJ_20597 OSJNBb0024N18.18 OSNPB_060216700 P0537F07.40 ENOG411E538 Q8LCF7 Q8LCF7_ARATH ATP phosphoribosyltransferase regulatory subunit (Uncharacterized protein At4g33780) 23138 ATP phosphoribosyltransferase regulatory subunit (Uncharacterized protein At4g33780) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2134268; AT4G33780 expressed protein Expressed protein (Os03g0231900 protein) (cDNA clone:001-202-G03, full insert sequence),Os02g0531900 protein Q10PJ9,A0A0P0VJZ5 Q10PJ9_ORYSJ,A0A0P0VJZ5_ORYSJ LOC_Os03g12930 Os03g0231900 OSNPB_030231900,Os02g0531900 OSNPB_020531900 ENOG411EK0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone h2a NA NA NA NA NA NA NA ENOG411E5U8 F3A4.10 Q9SN24 Q9SN24_ARATH At3g49930 (C2H2 and C2HC zinc fingers superfamily protein) (Zinc-finger-like protein) 23307 At3g49930 (C2H2 and C2HC zinc fingers superfamily protein) (Zinc-finger-like protein) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355] locus:2083053; AT3G49930 zinc finger NA NA NA NA NA NA NA ENOG411EM38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM3Z POP2 Q94CE5 GATP_ARATH Gamma-aminobutyrate transaminase POP2, mitochondrial (AtGABA-T) (EC 2.6.1.96) (Protein HEXENAL RESPONSE 1) (Protein POLLEN-PISTIL INCOMPATIBILITY 2) (AtPOP2) DISRUPTION PHENOTYPE: No vegetative phenotype. Oversensitivity to ionic stress but not to osmotic stress. Sustained roots growth upon treatment with E-2-hexenal. Increased gamma-amino butyric acid (GABA) in leaves and flowers and defects in pollen tube growth, guidance and fertility. Cell elongation defects. {ECO:0000269|PubMed:12859897, ECO:0000269|PubMed:18077464, ECO:0000269|PubMed:18846220, ECO:0000269|PubMed:20122158, ECO:0000269|PubMed:21471118}. Hypersensitivity to NaCl and LiCl but not to mannitol in root growth assays. Under NaCl stress pop2-1 mutant did not overaccumulate Na+ and Cl- but showed a slight decrease in K+ content. Additionally mutant roots exhibited substantial metabolic changes upon salt stress including overaccumulation of amino acids and decrease in carbohydrates content.,Pollen tube growth defects in vivo. Primary root and dark-grown hypocotyl growth inhibition at least in part due to cell elongation defects upon exogenous GABA exposure.,Primary root and dark-grown hypocotyl growth inhibition at least in part due to cell elongation defects upon exogenous GABA exposure. Male and female gametophyte defective; Homozygotes are viable: Sterile-D. Preuss-2003 FUNCTION: Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate or glyoxylate as amino-group acceptor, but not 2-oxoglutarate. The pyruvate-dependent activity is reversible while the glyoxylate-dependent activity is irreversible. Cannot use beta-alanine, ornithine, acetylornithine, serine, glycine, asparagine, glutamine, glutamate, valine, leucine, isoleucine, methionine, phenylalanine, histidine, lysine, arginine, aspartate, threonine, tyrosine, tryptophan, proline, or cysteine as amino donors. Modulates steady-state GABA levels in diploid pistil cells and the haploid pollen tube. Involved in the formation of a gradient of GABA along the pollen tube path. {ECO:0000269|PubMed:12859897, ECO:0000269|PubMed:17971036, ECO:0000269|PubMed:19264755, ECO:0000269|Ref.1}. MetaCyc:AT3G22200-LER-MONOMER; 2.6.1.19;2.6.1.96; 2.6.1.96 55187 Gamma-aminobutyrate transaminase POP2, mitochondrial (AtGABA-T) (EC 2.6.1.96) (Protein HEXENAL RESPONSE 1) (Protein POLLEN-PISTIL INCOMPATIBILITY 2) (AtPOP2) Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; 4-aminobutyrate transaminase activity [GO:0003867]; cobalt ion binding [GO:0050897]; gamma-aminobutyrate transaminase (glyoxylate dependent) activity [GO:0102351]; pyridoxal phosphate binding [GO:0030170]; zinc ion binding [GO:0008270]; beta-alanine catabolic process [GO:0019484]; fruit development [GO:0010154]; gamma-aminobutyric acid catabolic process [GO:0009450]; gamma-aminobutyric acid metabolic process [GO:0009448]; glutamate decarboxylation to succinate [GO:0006540]; glutamate metabolic process [GO:0006536]; glutamine metabolic process [GO:0006541]; inositol metabolic process [GO:0006020]; pollen tube adhesion [GO:0009865]; pollen tube growth [GO:0009860]; pollen tube guidance [GO:0010183]; response to cadmium ion [GO:0046686]; response to organic substance [GO:0010033]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; root development [GO:0048364]; shoot system development [GO:0048367]; succinate metabolic process [GO:0006105]; sucrose metabolic process [GO:0005985] TISSUE SPECIFICITY: Expressed in flowers, siliques, stems, leaves, shoots and roots. Detected in reproductive tissues, in the stigma, style, abscission zone of siliques, stamens and pollen. Not found in pollen tubes or the transmitting tract. In vegetative tissues, found in dark-grown hypocotyls, leaves, guard cells and primary roots, including the root tips and the elongation zones. Not found in the division zone of the root. {ECO:0000269|PubMed:18077464, ECO:0000269|PubMed:21471118}. locus:2090414; AT3G22200 Transaminase that degrades gamma-amino butyric acid (GABA) Gamma-aminobutyrate transaminase 1, mitochondrial (EC 2.6.1.96),Probable gamma-aminobutyrate transaminase 2, mitochondrial (EC 2.6.1.96),Probable gamma-aminobutyrate transaminase 3, mitochondrial (EC 2.6.1.96),Probable gamma-aminobutyrate transaminase 4 (OsGABA-T) (EC 2.6.1.96),Os04g0614600 protein (Fragment) Q7XN11,Q7XN12,Q6ZCF0,Q6ZH29,A0A0N7KJP5 GATP1_ORYSJ,GATP2_ORYSJ,GATP3_ORYSJ,GATP4_ORYSJ,A0A0N7KJP5_ORYSJ OSL2 Os04g0614600 LOC_Os04g52450 OsJ_16145 OSJNBa0008M17.4,Os04g0614500 LOC_Os04g52440 OSJNBa0008M17.3,Os08g0205900 LOC_Os08g10510 OJ1119_C05.10 OsJ_26408 P0486F07.39,GABA-T Os02g0112900 LOC_Os02g02210 OJ1399_H05.13 OsJ_05081,Os04g0614600 OSNPB_040614600 FUNCTION: Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate as amino-group acceptor, but not 2-oxoglutarate. Not involved in the interaction with blast fungus. {ECO:0000269|PubMed:16896530, ECO:0000269|Ref.1}.,FUNCTION: Transaminase that degrades gamma-amino butyric acid (GABA). {ECO:0000250}. ENOG411EM3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease NA NA NA NA NA NA NA ENOG411E5NX ATL69 Q9FL42 ATL69_ARATH Putative RING-H2 finger protein ATL69 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL69) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 17210 Putative RING-H2 finger protein ATL69 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL69) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2169399; AT5G07040 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411EDQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDQ9 E2FD,DEL2 Q9LFQ9,A0A1P8BA83 E2FD_ARATH,A0A1P8BA83_ARATH E2F transcription factor-like E2FD (DP-E2F-like protein 2) (E2F-like repressor E2L1),DP-E2F-like 2 DISRUPTION PHENOTYPE: Increased root length and smaller cotyledons. Reduced root meristematic zone but longer cells in the differentiation zone. {ECO:0000269|PubMed:19937368}. Long roots-D. Albani-2009 FUNCTION: Inhibitor of E2F-dependent regulation of gene expression. Binds specifically the E2 recognition site as a monomer without interacting with DP proteins. May be up-regulating E2FA and down-regulating repressors of cell cycle progression. Promotes cell proliferation and represses cell elongation. Regulated by proteolysis via a ubiquitin-proteasome pathway. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:19937368}. R-ATH-6804116; 40553,30314 E2F transcription factor-like E2FD (DP-E2F-like protein 2) (E2F-like repressor E2L1),DP-E2F-like 2 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell cycle [GO:0007049]; positive regulation of cell proliferation [GO:0008284]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected at the G1/S transition, but increases during the progression into S phase and peaks after the passage into G2. {ECO:0000269|PubMed:11786543}. TISSUE SPECIFICITY: Preferentially expressed in proliferating tissues. Highly expressed in young stalk and young flowers. Lower expression in young leaves and mature flowers. Detected in cotyledonary vascular tissues, the shoot apical meristem, the base of trichomes, the fully developed stomata, the central root cylinder and in the columella of lateral roots but not in the primary root tips or in the leaf epidermal cells. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:19937368}. locus:2147865; AT5G14960 E2F/DP family winged-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EDQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411EDQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily NA NA NA NA NA NA NA ENOG411EDQ6 SBT3.17 Q9C7U8 SBT3H_ARATH Subtilisin-like protease SBT3.17 (EC 3.4.21.-) (Subtilase subfamily 3 member 17) (AtSBT3.17) ARA:AT1G66220-MONOMER; 3.4.21.- 80793 Subtilisin-like protease SBT3.17 (EC 3.4.21.-) (Subtilase subfamily 3 member 17) (AtSBT3.17) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252] locus:2205278; AT1G66220 Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411EDQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os05g0596300 protein,Os06g0588700 protein A0A0P0WRS1,A0A0P0WY61 A0A0P0WRS1_ORYSJ,A0A0P0WY61_ORYSJ Os05g0596300 OSNPB_050596300,Os06g0588700 OSNPB_060588700 ENOG411EDQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os12g0273900 protein A0A0P0Y8Y6 A0A0P0Y8Y6_ORYSJ Os12g0273900 OSNPB_120273900 ENOG411EDQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EDQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDQN CRK36 Q9XEC6 CRK36_ARATH Cysteine-rich receptor-like protein kinase 36 (Cysteine-rich RLK36) (EC 2.7.11.1) FUNCTION: Forms a complex with CRK45 that may negatively control abscisic acid (ABA) and osmotic stress signal transduction. Can phosphorylate CRK45 in vitro (PubMed:22225700). MISCELLANEOUS: Seedlings silencing CRK36 show increased sensitivity to abscisic acid (ABA) and salt stress during post-germinative growth. {ECO:0000269|PubMed:22225700}. 2.7.11.1 74978 Cysteine-rich receptor-like protein kinase 36 (Cysteine-rich RLK36) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; response to abscisic acid [GO:0009737] locus:2137134; AT4G04490 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EDQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger NA NA NA NA NA NA NA ENOG411EDQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EDQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411EDQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PGAM NA NA NA NA NA NA NA ENOG411EDQY MAF3 A0A1P8BBX4 A0A1P8BBX4_ARATH K-box region and MADS-box transcription factor family protein 21767 K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] K-box region NA NA NA NA NA NA NA ENOG411EDQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NACHT domain NA NA NA NA NA NA NA ENOG411EDQP ABCG38 Q7PC85 AB38G_ARATH ABC transporter G family member 38 (ABC transporter ABCG.38) (AtABCG38) (Pleiotropic drug resistance protein 10) FUNCTION: May be a general defense protein. {ECO:0000250}. 161362 ABC transporter G family member 38 (ABC transporter ABCG.38) (AtABCG38) (Pleiotropic drug resistance protein 10) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Expressed in roots and siliques at low levels. {ECO:0000269|PubMed:12430018}. AT3G30842 ABC-2 type transporter NA NA NA NA NA NA NA ENOG411EDQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EDQR PAT05 Q9M306 ZDH10_ARATH Probable protein S-acyltransferase 5 (EC 2.3.1.225) (Probable palmitoyltransferase At3g48760) (Zinc finger DHHC domain-containing protein At3g48760) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.3}. 2.3.1.225; 2.3.1.225 53695 Probable protein S-acyltransferase 5 (EC 2.3.1.225) (Probable palmitoyltransferase At3g48760) (Zinc finger DHHC domain-containing protein At3g48760) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2099483; AT3G48760 zinc finger NA NA NA NA NA NA NA ENOG411E5V8 MTACP2 Q9FGJ4 ACPM3_ARATH Acyl carrier protein 3, mitochondrial (MtACP-3) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity). May be involved in the synthesis of short and medium chain fatty acids. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain (By similarity). {ECO:0000250}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. R-ATH-389661;R-ATH-77289; 14615 Acyl carrier protein 3, mitochondrial (MtACP-3) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) cytosol [GO:0005829]; mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; lipid A biosynthetic process [GO:0009245]; oxidation-reduction process [GO:0055114] locus:2168968; AT5G47630 Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Expressed protein (Os03g0595800 protein) (cDNA clone:001-023-A01, full insert sequence) Q10HA7 Q10HA7_ORYSJ Os03g0595800 LOC_Os03g39860 OSNPB_030595800 ENOG411E5V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein 1589 of unknown function (A_thal_3526) Os01g0837600 protein Q943N1 Q943N1_ORYSJ Os01g0837600 OsJ_04007 OSNPB_010837600 P0031D11.1 ENOG411E5V5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) Os05g0103400 protein (cDNA clone:J013062F19, full insert sequence) Q75M30 Q75M30_ORYSJ Os05g0103400 Os05g0103400 OsJ_16791 OSNPB_050103400 P0668H12.8 ENOG411E5V6 Q9LH80 Q9LH80_ARATH Transmembrane protein (Uncharacterized protein At3g14760) 19153 Transmembrane protein (Uncharacterized protein At3g14760) integral component of membrane [GO:0016021] locus:2099392; AT3G14760 NA NA NA NA NA NA NA NA ENOG411E5V1 PRE5,PRE1 Q9LJX1,Q9FLE9 PRE5_ARATH,PRE1_ARATH Transcription factor PRE5 (Basic helix-loop-helix protein 164) (AtbHLH164) (bHLH 164) (Protein PACLOBUTRAZOL RESISTANCE 5) (bHLH transcription factor bHLH164),Transcription factor PRE1 (Basic helix-loop-helix protein 136) (AtbHLH136) (bHLH 136) (Protein BANQUO 1) (Protein PACLOBUTRAZOL RESISTANCE 1) (bHLH transcription factor bHLH136) WT phenotype,Same as bnq3 single mutants: sepals and carpels are pale yellow or whitewhile the inflorescence stems and siliques are purple FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.,FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Binds IBH1, forming a pair of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20009022, ECO:0000269|PubMed:20305124, ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:23221598}. MISCELLANEOUS: Plants over-expressing PRE5 show long hypocotyls, pale green and slightly narrow leaves, elongated petioles and early flowering. They are not sensitive to the gibberellin inhibitor paclobutrazol during seed germination (PubMed:16527868). {ECO:0000305|PubMed:16527868}.,MISCELLANEOUS: Gain-of-function mutants (T-DNA tagging) show long hypocotyls, pale green and slightly narrow leaves, elongated petioles and early flowering. They are not sensitive to the gibberellin inhibitor paclobutrazol during seed germination (PubMed:16527868, PubMed:20009022, PubMed:23221598). {ECO:0000305|PubMed:16527868, ECO:0000305|PubMed:20009022, ECO:0000305|PubMed:23221598}. 10699,10515 Transcription factor PRE5 (Basic helix-loop-helix protein 164) (AtbHLH164) (bHLH 164) (Protein PACLOBUTRAZOL RESISTANCE 5) (bHLH transcription factor bHLH164),Transcription factor PRE1 (Basic helix-loop-helix protein 136) (AtbHLH136) (bHLH 136) (Protein BANQUO 1) (Protein PACLOBUTRAZOL RESISTANCE 1) (bHLH transcription factor bHLH136) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; gibberellic acid mediated signaling pathway [GO:0009740]; photomorphogenesis [GO:0009640]; regulation of growth [GO:0040008]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; response to brassinosteroid [GO:0009741]; transcription, DNA-templated [GO:0006351]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}. locus:1006230235;,locus:2178002; AT3G28857,AT5G39860 Transcription factor NA NA NA NA NA NA NA ENOG411E5V2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Expressed protein (Os12g0599800 protein) (cDNA clone:002-176-D12, full insert sequence) Q2QML5 Q2QML5_ORYSJ LOC_Os12g40760 Os12g0599800 OSNPB_120599800 ENOG411E5VX F14K14.16 Q9S7X9 Q9S7X9_ARATH F24J5.3 (Putative transcription factor; 86360-87167) (Uncharacterized protein At1g68730) (Zim17-type zinc finger protein) Embryo defective-Lorbiecke-2007 19165 F24J5.3 (Putative transcription factor; 86360-87167) (Uncharacterized protein At1g68730) (Zim17-type zinc finger protein) mitochondrion [GO:0005739]; chaperone binding [GO:0051087]; zinc ion binding [GO:0008270]; protein folding [GO:0006457]; protein import into mitochondrial matrix [GO:0030150]; protein stabilization [GO:0050821] locus:2012398; AT1G68730 zinc finger NA NA NA NA NA NA NA ENOG411E5VY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Os01g0512700 protein C7IXY1 C7IXY1_ORYSJ Os01g0512700 Os01g0512700 OSNPB_010512700 ENOG411E5VZ F13I12.230 Q9SD55 Q9SD55_ARATH At3g47180 (RING/U-box superfamily protein) (Zinc-finger-like protein) 24022 At3g47180 (RING/U-box superfamily protein) (Zinc-finger-like protein) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2075641; AT3G47180 E3 ubiquitin ligase BIG NA NA NA NA NA NA NA ENOG411E5VU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Expressed protein (Os11g0241700 protein) Q53Q17 Q53Q17_ORYSJ Os11g0241700 LOC_Os11g13750 Os11g0241700 OsJ_33491 OSNPB_110241700 ENOG411E5VV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os05g0478000 protein (cDNA clone:002-174-H07, full insert sequence),Os02g0475101 protein (Fragment) Q75GN1,A0A0P0VIW9 Q75GN1_ORYSJ,A0A0P0VIW9_ORYSJ Os05g0478000 Os05g0478000 OsJ_18928 OSJNBa0018K15.8 OSNPB_050478000,Os02g0475101 OSNPB_020475101 ENOG411E5VS O48717,A8MQ99 O48717_ARATH,A8MQ99_ARATH At2g26500 (At2g26500/T9J22.17) (Cytochrome b6f complex subunit (PetM)) (Expressed protein),Cytochrome b6f complex subunit (PetM) 12988,9928 At2g26500 (At2g26500/T9J22.17) (Cytochrome b6f complex subunit (PetM)) (Expressed protein),Cytochrome b6f complex subunit (PetM) chloroplast thylakoid membrane [GO:0009535]; cytochrome b6f complex [GO:0009512]; integral component of membrane [GO:0016021]; protein domain specific binding [GO:0019904] locus:2066291; AT2G26500 PetM family of cytochrome b6f complex subunit 7 Cytochrome b6f complex subunit, putative, expressed (Os03g0765900 protein) Q7Y0C9 Q7Y0C9_ORYSJ OSJNBa0079B15.15 LOC_Os03g55720 Os03g0765900 OsJ_12709 OSNPB_030765900 ENOG411E5VM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5VN SP1L2 Q9LE54 SP1L2_ARATH Protein SPIRAL1-like 2 FUNCTION: Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth. {ECO:0000269|PubMed:16478750}. 10882 Protein SPIRAL1-like 2 microtubule [GO:0005874] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16478750}. locus:2026441; AT1G69230 Inherit from euNOG: nitrilase-associated protein NA NA NA NA NA NA NA ENOG411E5VH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E5VJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E5VK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Solute carrier family 12 (Potassium chloride Os08g0323800 protein Q0J6F7 Q0J6F7_ORYSJ Os08g0323800 Os08g0323800 OSNPB_080323800 ENOG411E5VD Q9SKI0 Q9SKI0_ARATH At2g10940/F15K19.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Expressed protein) (Uncharacterized protein At2g10940; F15K19.1) 29648 At2g10940/F15K19.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Expressed protein) (Uncharacterized protein At2g10940; F15K19.1) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; plasmodesma [GO:0009506] locus:2041927; AT2G10940 AAI NA NA NA NA NA NA NA ENOG411E5VF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os09g0571700 protein (Putative transcription factor Pti5) Q651A5 Q651A5_ORYSJ Os09g0571700 B1331F11.13 OsJ_30431 OSNPB_090571700 ENOG411E5VG CCL Q96500 Q96500_ARATH A.thaliana mRNA (orf19) from chromosome III (AT3g26740/MLJ15_14) (CCR-like protein) (Cytokinin-repressed protein ccr-like) (Light regulated protein, putative) FUNCTION: Thylakoid-determinant subunit of high molecular weight LFNRs-containing protein complexes. {ECO:0000269|PubMed:26941088}. 15314 A.thaliana mRNA (orf19) from chromosome III (AT3g26740/MLJ15_14) (CCR-like protein) (Cytokinin-repressed protein ccr-like) (Light regulated protein, putative) chloroplast [GO:0009507] locus:2090837; AT3G26740 light-regulated protein-like Light-regulated protein, chloroplastic Q03200 LIRP1_ORYSJ LIR1 Os01g0102900 LOC_Os01g01340 OsJ_00023 P0436E04.2 P0455C04.23 P0672D08.50 DISRUPTION PHENOTYPE: Retarded growth. Reduced photosynthetic electron transfer. Marked decrease in the accumulation of LFNR1 and LFNR2-containing thylakoid protein complexes. {ECO:0000269|PubMed:26941088}. FUNCTION: Thylakoid-determinant subunit of high molecular weight LFNRs-containing protein complexes. {ECO:0000269|PubMed:26941088}. ENOG411E5VB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411E5VC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0376450 protein A0A0P0XTF9 A0A0P0XTF9_ORYSJ Os10g0376450 OSNPB_100376450 ENOG411E1WK F19K16.25 Q9CA85,Q8GW85 Q9CA85_ARATH,Q8GW85_ARATH CASP-like protein (DUF1677) (Uncharacterized protein F19K16.25),DUF1677 family protein (DUF1677) (Uncharacterized protein At5g25840) (Uncharacterized protein At5g25840/F18A17_90) 18907,19175 CASP-like protein (DUF1677) (Uncharacterized protein F19K16.25),DUF1677 family protein (DUF1677) (Uncharacterized protein At5g25840) (Uncharacterized protein At5g25840/F18A17_90) locus:2017834;,locus:2145264; AT1G79770,AT5G25840 Protein of unknown function (DUF1677) Os06g0554200 protein A0A0P0WXZ6 A0A0P0WXZ6_ORYSJ Os06g0554200 OSNPB_060554200 ENOG411E1WJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B2 (Beta-expansin-2) (OsEXPB2) (OsaEXPb1.9) O24230 EXPB2_ORYSJ EXPB2 Os10g0555700 LOC_Os10g40710 OsJ_32419 OSJNBb0014I11.2 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E1WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Heat shock protein Os02g0788600 protein A0A0P0VQG3 A0A0P0VQG3_ORYSJ Os02g0788600 OSNPB_020788600 ENOG411E1WF TULP6,TLP6 Q0WPY0,A0A1P8ASW8,F4HT64 TLP6_ARATH,A0A1P8ASW8_ARATH,F4HT64_ARATH Tubby-like F-box protein 6 (AtTLP6),Tubby like protein 6 46065,43340,45978 Tubby-like F-box protein 6 (AtTLP6),Tubby like protein 6 phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitous, with higher levels in flowers. {ECO:0000269|PubMed:15064372}. locus:2036730; AT1G47270 tubby-like F-box protein NA NA NA NA NA NA NA ENOG411E1WC RPS7; P92557 RT07_ARATH Ribosomal protein S7, mitochondrial FUNCTION: One of the primary rRNA binding proteins, it binds directly to 18S rRNA where it nucleates assembly of the head domain of the small subunit. {ECO:0000250}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07696) is demonstrated. 17201 Ribosomal protein S7, mitochondrial mitochondrial small ribosomal subunit [GO:0005763]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:2828051;locus:504954610; AT2G07696ATMG01270; ribosomal protein S7 Os12g0524750 protein,Os09g0519601 protein,Ribosomal protein S7 A0A0P0YBF7,A0A0P0XQ97,Q8HCR2 A0A0P0YBF7_ORYSJ,A0A0P0XQ97_ORYSJ,Q8HCR2_ORYSJ Os12g0524750 OSNPB_120524750,Os09g0519601 OSNPB_090519601,rps7 ENOG411E1WB CYCD3-2,CYCD3-3,CYCD3:2 Q9FGQ7,Q9SN11,A0A1P8BEM5 CCD32_ARATH,CCD33_ARATH,A0A1P8BEM5_ARATH Cyclin-D3-2 (G1/S-specific cyclin-D3-2) (CycD3;2),Cyclin-D3-3 (G1/S-specific cyclin-D3-3) (CycD3;3),CYCLIN D32 FUNCTION: Promotes divisions in the guard cells (GCs) after the guard mother cells (GMC) symmetric division when in the presence of CDKA-1. {ECO:0000269|PubMed:24687979}.,FUNCTION: Promotes divisions in the guard cells (GCs) after the guard mother cells (GMC) symmetric division. {ECO:0000269|PubMed:24687979}. 42351,41738,47285 Cyclin-D3-2 (G1/S-specific cyclin-D3-2) (CycD3;2),Cyclin-D3-3 (G1/S-specific cyclin-D3-3) (CycD3;3),CYCLIN D32 nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; guard mother cell differentiation [GO:0010444]; seed development [GO:0048316],nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in developing vegetative and floral primordia. {ECO:0000269|PubMed:11115883}. locus:2157172;,locus:2083128; AT5G67260,AT3G50070 cyclin d3 NA NA NA NA NA NA NA ENOG411E1WZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A15 (Alpha-expansin-15) (OsEXP15) (OsEXPA15) (OsaEXPa1.8),Os03g0155700 protein (Fragment) Q4PR50,A0A0P0VT78 EXP15_ORYSJ,A0A0P0VT78_ORYSJ EXPA15 EXP15 Os03g0155700 Os03g0155600 LOC_Os03g06020 OSJNBa0011L14.16,Os03g0155700 OSNPB_030155700 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E1WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR Os03g0187500 protein (Fragment) Q0DUG4,A0A0N7KGQ7 Q0DUG4_ORYSJ,A0A0N7KGQ7_ORYSJ Os03g0187500 Os03g0187500 OSNPB_030187500,Os03g0187500 OSNPB_030187500 ENOG411E1WW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0548500 protein (Fragment),Os01g0560900 protein,Os03g0577800 protein (Fragment) C7J1W2,A0A0N7KD61,A0A0P0W0A0 C7J1W2_ORYSJ,A0A0N7KD61_ORYSJ,A0A0P0W0A0_ORYSJ Os04g0548500 Os04g0548500 OSNPB_040548500,Os01g0560900 OSNPB_010560900,Os03g0577800 OSNPB_030577800 ENOG411E1WV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os10g0507000 protein (Fragment),Os10g0507150 protein (Fragment) A0A0P0XWD7,A0A0P0XW01 A0A0P0XWD7_ORYSJ,A0A0P0XW01_ORYSJ Os10g0507000 OSNPB_100507000,Os10g0507150 OSNPB_100507150 ENOG411E1WS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411E1WR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0549665 protein) (cDNA clone:001-208-B03, full insert sequence) (cDNA clone:J033051A04, full insert sequence),Os11g0549665 protein (Fragment) Q2R2S8,A0A0N7KT22,A0A0P0Y3Y8 Q2R2S8_ORYSJ,A0A0N7KT22_ORYSJ,A0A0P0Y3Y8_ORYSJ LOC_Os11g34790 Os11g0549665 OSNPB_110549665,Os11g0549665 OSNPB_110549665 ENOG411E1WQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os10g0510700 protein A0A0P0XWQ9 A0A0P0XWQ9_ORYSJ Os10g0510700 OSNPB_100510700 ENOG411E1WP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycerophosphoryl diester phosphodiesterase family Os08g0535700 protein A0A0P0XIP2 A0A0P0XIP2_ORYSJ Os08g0535700 OSNPB_080535700 ENOG411E1W7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os06g0156700 protein (Putative lipase) (cDNA clone:002-125-D10, full insert sequence),Os06g0129600 protein Q5VMA4,A0A0P0WSD0 Q5VMA4_ORYSJ,A0A0P0WSD0_ORYSJ Os06g0156700 OSJNBa0085L11.38 OSNPB_060156700 P0046E09.16,Os06g0129600 OSNPB_060129600 ENOG411E1W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0606900 protein (Fragment) A0A0P0X8T8 A0A0P0X8T8_ORYSJ Os07g0606900 OSNPB_070606900 ENOG411E1W5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pre-mRNA cleavage complex II protein Clp1 Os01g0354700 protein A0A0P0V2D3 A0A0P0V2D3_ORYSJ Os01g0354700 OSNPB_010354700 ENOG411E1W3 MYB52,ATMYB54,MYB54 Q6R0C4,Q9FX36,A0A1P8AW77 MYB52_ARATH,Q9FX36_ARATH,A0A1P8AW77_ARATH Transcription factor MYB52 (Myb-related protein 52) (AtMYB52) (Protein ABA-HYPERSENSTIVE 1),At1g73410 (MYB transcription factor) (Myb domain protein 54) (Myb-like transcription factor, putative) (Uncharacterized protein At1g73410),Myb domain protein 54 DISRUPTION PHENOTYPE: Secondary cell wall (SCW) defects including severe reduction in SCW thickening in both interfascicular fibers and xylary fibers of inflorescence stems (PubMed:18952777). Hyperlignified SCW in interfascicular fibers and xylary fibers (PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:23781226}. FUNCTION: Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.,FUNCTION: Transcription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers. {ECO:0000269|PubMed:18952777}. MISCELLANEOUS: Plants silencing MYB54 exhibit secondary cell wall (SCW) defects including severe reduction in SCW thickening in both interfascicular fibers and xylary fibers of inflorescence stems. {ECO:0000269|PubMed:18952777}. 28925,28205,23736 Transcription factor MYB52 (Myb-related protein 52) (AtMYB52) (Protein ABA-HYPERSENSTIVE 1),At1g73410 (MYB transcription factor) (Myb domain protein 54) (Myb-like transcription factor, putative) (Uncharacterized protein At1g73410),Myb domain protein 54 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cell wall organization [GO:0071555]; negative regulation of secondary cell wall biogenesis [GO:1901347]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of secondary cell wall biogenesis [GO:1901348]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to salt [GO:1902074]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21399993}. locus:2030903;,locus:2206910; AT1G17950,AT1G73410 Transcription factor Myb-like DNA-binding domain containing protein, expressed (Os03g0720800 protein) (Putative Myb-like DNA-binding protein) (Putative Myb/Myb-related protein) (cDNA clone:J013060F16, full insert sequence) Q8LLP3 Q8LLP3_ORYSJ OSJNBa0031O09.05 B1377B10.16 LOC_Os03g51110 Os03g0720800 OsJ_12381 OSNPB_030720800 ENOG411E1W2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0514500 protein (Fragment) A0A0P0WPN3 A0A0P0WPN3_ORYSJ Os05g0514500 OSNPB_050514500 ENOG411E1W1 MYB83 Q9C6U1 MYB83_ARATH Transcription factor MYB83 (Myb-related protein 83) (AtMYB83) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants myb48 and myb83 nearly lack secondary wall thickening, stop growing after developing one to two pairs of small leaves and subsequently die. {ECO:0000269|PubMed:19808805}. FUNCTION: Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. 38419 Transcription factor MYB83 (Myb-related protein 83) (AtMYB83) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed specifically in fiber and vessel cells that are undergoing secondary wall thickening in floral stems. Expressed in vessels but not in xylary fibers in the developing secondary xylem of roots. {ECO:0000269|PubMed:19808805}. locus:2103459; AT3G08500 myb domain protein 83 NA NA NA NA NA NA NA ENOG411E1W0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain Flavonoid O-methyltransferase-like protein Os11g0303600 (EC 2.1.1.-),Herbicide safener binding protein 1-maize (O-methyltransferase family protein, expressed) (Os11g0306300 protein) (cDNA clone:006-211-A06, full insert sequence),O-methyltransferase family protein (Os11g0305400 protein),Os11g0304050 protein Q53QK0,Q53LX2,Q2R6H4,A0A0P0Y1P5 Y1103_ORYSJ,Q53LX2_ORYSJ,Q2R6H4_ORYSJ,A0A0P0Y1P5_ORYSJ Os11g0303600 LOC_Os11g19840,Os11g0306300 LOC_Os11g20080 Os11g0306300 OSNPB_110306300,Os11g0305400 LOC_Os11g20040 Os11g0305400 OsJ_33727 OSNPB_110305400,Os11g0304050 OSNPB_110304050 ENOG411EBWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA abscisic acid receptor NA NA NA NA NA NA NA ENOG411EBWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EBWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homoserine dehydrogenase NAD binding domain NA NA NA NA NA NA NA ENOG411EBWD Q9LVD8,Q8VYT2 CAP7_ARATH,CAP6_ARATH Putative clathrin assembly protein At5g57200,Putative clathrin assembly protein At4g25940 66609,67768 Putative clathrin assembly protein At5g57200,Putative clathrin assembly protein At4g25940 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897] locus:2165615;,locus:2120780; AT5G57200,AT4G25940 ENTH NA NA NA NA NA NA NA ENOG411EBWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myosin N-terminal SH3-like domain NA NA NA NA NA NA NA ENOG411EBWF Q3E966 Q3E966_ARATH Chromo domain cec-like protein 49284 Chromo domain cec-like protein locus:2149388; AT5G24880 NA NA NA NA NA NA NA NA ENOG411EBWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0177300 protein A0A0P0XCW2 A0A0P0XCW2_ORYSJ Os08g0177300 OSNPB_080177300 ENOG411EBWH T15B3_30,T15B16.6 Q9LE85,Q9SZ85,Q56X58,Q9LD86,Q9LXX0,Q9ZU00,Q9S9J8,Q9LDV7,Q9ZSI9,Q9SYI8,Q9SYI9,O04257,Q9SYJ0,Q9ZSJ1,A0A1P8B397,F4JH56,F4I0J7 Q9LE85_ARATH,Q9SZ85_ARATH,Q56X58_ARATH,Q9LD86_ARATH,Q9LXX0_ARATH,Q9ZU00_ARATH,Q9S9J8_ARATH,Q9LDV7_ARATH,Q9ZSI9_ARATH,Q9SYI8_ARATH,Q9SYI9_ARATH,O04257_ARATH,Q9SYJ0_ARATH,Q9ZSJ1_ARATH,A0A1P8B397_ARATH,F4JH56_ARATH,F4I0J7_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g11540),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g09690) (Uncharacterized protein F17A8.40),Cysteine/histidine-rich C1 domain protein,Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g11390),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T15B3_30),DC1 domain-containing protein (Putative CHP-rich zinc finger protein similar to T10M13.18),Cysteine/Histidine-rich C1 domain family protein (T23K8.9 protein) (Uncharacterized protein At1g65180),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g11550),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein) (T15B16.10 protein),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein),AT4g01920/T7B11_18 (Cysteine/Histidine-rich C1 domain family protein) (Putative CHP-rich zinc finger protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g02190) (Uncharacterized protein T10M13.18),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein) (T15B16.6 protein),Cysteine/Histidine-rich C1 domain family protein 60740,39545,9146,59336,76532,113843,75339,76917,74610,74844,76084,75765,75258,76885,62933,32085,59644 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g11540),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g09690) (Uncharacterized protein F17A8.40),Cysteine/histidine-rich C1 domain protein,Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g11390),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T15B3_30),DC1 domain-containing protein (Putative CHP-rich zinc finger protein similar to T10M13.18),Cysteine/Histidine-rich C1 domain family protein (T23K8.9 protein) (Uncharacterized protein At1g65180),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g11550),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein) (T15B16.10 protein),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein),AT4g01920/T7B11_18 (Cysteine/Histidine-rich C1 domain family protein) (Putative CHP-rich zinc finger protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g02190) (Uncharacterized protein T10M13.18),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein) (T15B16.6 protein),Cysteine/Histidine-rich C1 domain family protein intracellular [GO:0005622]; intracellular signal transduction [GO:0035556],metal ion binding [GO:0046872],intracellular [GO:0005622]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; intracellular signal transduction [GO:0035556],plasmodesma [GO:0009506]; nucleic acid binding [GO:0003676],intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556] locus:2123121;,locus:2118460;,locus:2123051;,locus:2097114;,locus:2132158;,locus:2200415;,locus:2123131;,locus:2133452;,locus:2141370;,locus:2141380;,locus:2132188;,locus:2141390;,locus:2133377;,locus:504955231;,locus:2033290; AT4G11540,AT4G09690,AT4G11390,AT3G43890,AT4G02180,AT1G65180,AT4G11550,AT4G01740,AT4G01910,AT4G01920,AT4G02190,AT4G01930,AT4G01760,AT4G01925,AT1G69150 cysteine histidine-rich C1 domain-containing protein NA NA NA NA NA NA NA ENOG411EBWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411EBWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EBWK F4J5M9 CLC3_ARATH Clathrin light chain 3 FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. 29183 Clathrin light chain 3 clathrin coat of coated pit [GO:0030132]; clathrin coat of trans-Golgi network vesicle [GO:0030130]; clathrin vesicle coat [GO:0030125]; clathrin heavy chain binding [GO:0032050]; structural molecule activity [GO:0005198]; clathrin-dependent endocytosis [GO:0072583]; intracellular protein transport [GO:0006886] locus:2074378; AT3G51890 Clathrin light chain NA NA NA NA NA NA NA ENOG411EBWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0421700 protein (cDNA clone:002-125-G04, full insert sequence) Q8H335 Q8H335_ORYSJ Os08g0421700 OsJ_27350 OSJNBa0077M12.112 OSNPB_080421700 ENOG411EBWN LEC Q9LJR2,Q9LK72 LECT2_ARATH,LECT5_ARATH Lectin-like protein LEC (AtLEC) (Ath.lec2),Lectin-like protein At3g16530 FUNCTION: Plays a role in defense responses triggered by jasmonate, ethylene and chitin. {ECO:0000269|PubMed:19214436}. 29749,30509 Lectin-like protein LEC (AtLEC) (Ath.lec2),Lectin-like protein At3g16530 apoplast [GO:0048046]; cell wall [GO:0005618]; intracellular [GO:0005622]; carbohydrate binding [GO:0030246]; cellular response to chitin [GO:0071323]; cellular response to ethylene stimulus [GO:0071369]; cellular response to jasmonic acid stimulus [GO:0071395]; defense response to fungus, incompatible interaction [GO:0009817]; ethylene-activated signaling pathway [GO:0009873]; response to wounding [GO:0009611],apoplast [GO:0048046]; cell wall [GO:0005618]; nucleus [GO:0005634]; plant-type cell wall [GO:0009505]; carbohydrate binding [GO:0030246]; defense response to fungus [GO:0050832]; response to chitin [GO:0010200]; response to oomycetes [GO:0002239] TISSUE SPECIFICITY: Expressed in rosette leaves, inflorescences, roots, leaf veins, carpel heads, and silique receptacles. {ECO:0000269|PubMed:19214436}. locus:504955770;,locus:2088349; AT3G15356,AT3G16530 legume lectin family protein NA NA NA NA NA NA NA ENOG411EBWP Q9LEV0,A0A1P8BEM8,A0A1P8BEP8 PPP7I_ARATH,A0A1P8BEM8_ARATH,A0A1P8BEP8_ARATH Serine/threonine-protein phosphatase 7 inactive homolog,Calcineurin-like metallo-phosphoesterase superfamily protein 67626,70714,69062 Serine/threonine-protein phosphatase 7 inactive homolog,Calcineurin-like metallo-phosphoesterase superfamily protein hydrolase activity [GO:0016787]; metal ion binding [GO:0046872],hydrolase activity [GO:0016787] locus:2183800; AT5G10900 PP2Ac NA NA NA NA NA NA NA ENOG411EBWQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os03g0176800 protein) (cDNA clone:J033148K19, full insert sequence),Os03g0179200 protein Q10R04,A0A0P0VTX0 Q10R04_ORYSJ,A0A0P0VTX0_ORYSJ Os03g0176800 LOC_Os03g07970 OsJ_09626 OSNPB_030176800,Os03g0179200 OSNPB_030179200 ENOG411EBWR MORF5,MORF6 Q9C7Y2,O82169 MORF5_ARATH,MORF6_ARATH Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial (RNA editing-interacting protein 5),Multiple organellar RNA editing factor 6, mitochondrial (RNA editing-interacting protein 6) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23818871}. FUNCTION: Involved in organellar RNA editing. Required for the processing of few RNA editing sites in mitochondria. {ECO:0000269|PubMed:23818871}.,FUNCTION: Involved in organellar RNA editing. Required for the processing of few RNA editing sites in mitochondria. {ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. 26025,26368 Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial (RNA editing-interacting protein 5),Multiple organellar RNA editing factor 6, mitochondrial (RNA editing-interacting protein 6) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],mitochondrion [GO:0005739]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2206639;,locus:2063389; AT1G32580,AT2G35240 NA NA NA NA NA NA NA NA ENOG411EBWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EBWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAA transporter family NA NA NA NA NA NA NA ENOG411EBWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411EBWW WEL3 Q9FMN1 WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 (Protein WEL3) 84524 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 (Protein WEL3) cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2160046; AT5G42880 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411EBWX SOT4,SOT3 Q8RUC1,Q9STQ6 SOT4_ARATH,SOT3_ARATH Cytosolic sulfotransferase 4 (AtSOT4) (EC 2.8.2.-),Cytosolic sulfotransferase 3 (AtSOT3) (EC 2.8.2.-) FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. {ECO:0000250}. ARA:AT2G27570-MONOMER; R-ATH-156584; 2.8.2.- 31933,36285 Cytosolic sulfotransferase 4 (AtSOT4) (EC 2.8.2.-),Cytosolic sulfotransferase 3 (AtSOT3) (EC 2.8.2.-) cytoplasm [GO:0005737]; sulfotransferase activity [GO:0008146] locus:2042026;,locus:2136854; AT2G27570,AT4G26280 Sulfotransferase domain Sulfotransferase (EC 2.8.2.-) Q6ZJP5 Q6ZJP5_ORYSJ OJ1217_D10.24 Os08g0239900 OSNPB_080239900 ENOG411EBWY UBA1B,UBA1C Q9SHZ5,O64571 UBA1B_ARATH,UBA1C_ARATH UBP1-associated proteins 1B,UBP1-associated proteins 1C FUNCTION: Acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity). {ECO:0000250}.,FUNCTION: May regulate the turnover of mRNAs in the nucleus. {ECO:0000250}. 42884,69597 UBP1-associated proteins 1B,UBP1-associated proteins 1C nucleus [GO:0005634]; RNA binding [GO:0003723],nucleus [GO:0005634]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270] locus:2055951;,locus:2047685; AT2G22100,AT2G19380 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EBWZ AK2,AK3,CARAB-AK-LYS O23653,Q9S702,A0A1P8BBD5 AK2_ARATH,AK3_ARATH,A0A1P8BBD5_ARATH Aspartokinase 2, chloroplastic (EC 2.7.2.4) (Aspartate kinase 2),Aspartokinase 3, chloroplastic (EC 2.7.2.4) (Aspartate kinase 3),Aspartokinase (EC 2.7.2.4) FUNCTION: Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway.,FUNCTION: Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. {ECO:0000269|PubMed:11569502}. PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3.; PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5.,PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4. {ECO:0000256|RuleBase:RU004249}.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3. {ECO:0000256|RuleBase:RU004249}.; PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5. {ECO:0000256|RuleBase:RU004249}. ARA:AT5G14060-MONOMER;,ARA:AT3G02020-MONOMER;MetaCyc:AT3G02020-MONOMER; 2.7.2.4; 2.7.2.4 59605,61216,50221 Aspartokinase 2, chloroplastic (EC 2.7.2.4) (Aspartate kinase 2),Aspartokinase 3, chloroplastic (EC 2.7.2.4) (Aspartate kinase 3),Aspartokinase (EC 2.7.2.4) chloroplast stroma [GO:0009570]; aspartate kinase activity [GO:0004072]; ATP binding [GO:0005524]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088],aspartate kinase activity [GO:0004072]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088] TISSUE SPECIFICITY: Expressed in stems, leaves, floral organs and young seedlings. {ECO:0000269|PubMed:9207844}.,TISSUE SPECIFICITY: Highly expressed in xylem of leaves and hypocotyls, stele of roots and in trichomes after bolting. Weak expression in veins and mesophyll cells of caulone leaves, inflorescence stems, sepals, petals and stigmata. {ECO:0000269|PubMed:11569502}. locus:2174708;,locus:2078638; AT5G14060,AT3G02020 Amino acid kinase family NA NA NA NA NA NA NA ENOG411EBW0 PIP5K9 Q8L850 PI5K9_ARATH Phosphatidylinositol 4-phosphate 5-kinase 9 (AtPIP5K9) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 9) (Diphosphoinositide kinase 9) (PtdIns(4)P-5-kinase 9) Concentration of sucrose in the mutant roots are lower than in wild type. The concentration of myo-inositol is increased as are those of glucose and fructose.,Shortened primary root (~30% compared to wild type). Shortening is more pronounced 6d after germination. Phenotype results from a reduction in cell elongation.,Whereas roots of wild-type seedlings are elongated at 14°C no obvious difference in root growth at 14 or 22°C in mutant seedlings are detected indicating that pip5k9-d is resistant to chilling. FUNCTION: Plays a role in sugar-mediated root development. Interaction with CINV1 induces repression of CINV1 activity and negative regulation of sugar-mediated root cell elongation. {ECO:0000269|PubMed:17220200}. MISCELLANEOUS: The gain-of-function mutant pip5k9-d (T-DNA insertion line) has reduced primary root length. {ECO:0000305|PubMed:17220200}. ARA:AT3G09920-MONOMER; R-ATH-1660499;R-ATH-6811558;R-ATH-8856828; 2.7.1.68; 2.7.1.68 92092 Phosphatidylinositol 4-phosphate 5-kinase 9 (AtPIP5K9) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 9) (Diphosphoinositide kinase 9) (PtdIns(4)P-5-kinase 9) cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524]; carbohydrate metabolic process [GO:0005975]; cellular amino acid metabolic process [GO:0006520] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:17220200}. locus:2085074; AT3G09920 PIPKc Phosphatidylinositol 4-phosphate 5-kinase (EC 2.7.1.68),Os02g0822500 protein (Fragment) Q6KA01,A0A0P0VRE2,A0A0P0VRE9,A0A0N7KGC7 Q6KA01_ORYSJ,A0A0P0VRE2_ORYSJ,A0A0P0VRE9_ORYSJ,A0A0N7KGC7_ORYSJ OJ1119_A01.22-1 Os02g0822500 OsJ_08924 OSNPB_020822500,Os02g0822500 OSNPB_020822500 ENOG411EBW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EBW2 Q9FHN7,A0A1P8BCG9 Q9FHN7_ARATH,A0A1P8BCG9_ARATH Auxin-responsive GH3 family protein (Auxin-responsive GH3-like protein),Auxin-responsive GH3 family protein ARA:GQT-1197-MONOMER; R-ATH-6798695; 65766,55659 Auxin-responsive GH3 family protein (Auxin-responsive GH3-like protein),Auxin-responsive GH3 family protein locus:2153092; AT5G51470 Auxin-responsive GH3 family protein NA NA NA NA NA NA NA ENOG411EBW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Melibiase NA NA NA NA NA NA NA ENOG411EBW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411EBW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EBW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os05g0348632 protein,Os05g0343900 protein,Os05g0353850 protein,Os05g0326500 protein (Os05g0326800 protein),Os05g0347575 protein,Os05g0343700 protein (Os05g0348500 protein),Os05g0349066 protein B9FGZ9,B9FH01,B9FP28,B9FGQ2,Q5W657,A0A0P0WL91,A0A0N7KKL1 B9FGZ9_ORYSJ,B9FH01_ORYSJ,B9FP28_ORYSJ,B9FGQ2_ORYSJ,Q5W657_ORYSJ,A0A0P0WL91_ORYSJ,A0A0N7KKL1_ORYSJ Os05g0348632 OsJ_18139 OSNPB_050348632,Os05g0343900 OsJ_18141 OSNPB_050343900,Os05g0353850 OsJ_18187 OSNPB_050353850,Os05g0326800 Os05g0326500 OsJ_18082 OSNPB_050326500 OSNPB_050326800,Os05g0347575 B1164G01.12 OsJ_18172 OSJNBb0052F16.4 OSNPB_050347575,Os05g0343700 Os05g0348500 OSNPB_050343700 OSNPB_050348500,Os05g0349066 OSNPB_050349066 ENOG411EBW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C2H2 type Zinc finger protein STAR3 (Protein ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1) (Protein ART1) (Protein SENSITIVE TO ALUMINUM RHIZOTOXICITY 3) Q2QX40 ART1_ORYSJ STAR3 Os12g0170400 LOC_Os12g07280 DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but strong inhibition of root elongation when grown in the presence of Al or on acidic soil. {ECO:0000269|PubMed:19880795}. FUNCTION: Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}. ENOG411EBW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PostSET NA NA NA NA NA NA NA ENOG411EBW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9K0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411DTH4 RNR2B,TSO2 P0DKH2,Q9LSD0 RI2BC_ARATH,RIR2C_ARATH Putative ribonucleoside-diphosphate reductase small chain B (Ribonucleoside-diphosphate reductase R2B subunit) (Ribonucleotide reductase small subunit B),Ribonucleoside-diphosphate reductase small chain C (EC 1.17.4.1) (Ribonucleoside-diphosphate reductase TSO2 subunit) (Ribonucleotide reductase small subunit C) DISRUPTION PHENOTYPE: Embryo lethality when homozygous. {ECO:0000269|PubMed:21614643}. At the seedling stage tso2-1 mutants were similar to the wild type with normal roots cotyledons and young leaves. Abnormalities first appeared in the fifth rosette leaf and persisted in all subsequent leaves floral organs and siliques. The abnormalities included white sectors in green organs uneven thickness rough surfaces and irregular margins of leaves or floral organs. Stamens occasionally exhibited carpel characteristics indicating homeotic transformation. The rough and uneven sepals apparently resulted from abnormally enlarged cells as well as cell clusters projecting above the epidermis. The white sectors appeared to result from an absence of chloroplasts in patches of mesophyll cells and the formation of large air spaces or tiny cells in subepidermal cell layers. Occasionally tso2 mutants exhibited fasciated stems on which a single SAM a group of self-renewing cells at the shoot tip was enlarged and split into multiple SAMs. Finally tso2 mutants exhibited reduced fertility with ;29% aborted seeds. tso2-1 floral tissues were found to contain significantly reduced levels of all four dNTPs. tso2-1 exhibited slightly increased sensitivity to UV-C light but only at high UV-C light levels.,tso2-1 rnr2a-1 seedlings did not develop beyond the two- to four-leaf stage. Their SAMs were terminated with callus-like cells and their leaves exhibited massively. Exhibited significantly increased sensitivity to UV-C light. Variegated leaves; Abnormal leaf and floral organ margins; Low penetrance of fasciated stems and inflorescences and stamens exhibiting carpel characteristics; Reduced fertility-Z. Liu-2006 FUNCTION: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. Involved in DNA damage repair and programmed cell death inhibition. {ECO:0000269|PubMed:16399800}. MISCELLANEOUS: 'TSO' means 'ugly' in Chinese. PATHWAY: Genetic information processing; DNA replication. ARA:AT3G27060-MONOMER; R-ATH-499943; 1.17.4.1;1.17.4.2; 1.17.4.1 18715,38034 Putative ribonucleoside-diphosphate reductase small chain B (Ribonucleoside-diphosphate reductase R2B subunit) (Ribonucleotide reductase small subunit B),Ribonucleoside-diphosphate reductase small chain C (EC 1.17.4.1) (Ribonucleoside-diphosphate reductase TSO2 subunit) (Ribonucleotide reductase small subunit C) deoxyribonucleotide biosynthetic process [GO:0009263]; oxidation-reduction process [GO:0055114],cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [GO:0004748]; deoxyribonucleotide biosynthetic process [GO:0009263]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; multicellular organism development [GO:0007275]; programmed cell death [GO:0012501]; regulation of cell cycle [GO:0051726] DEVELOPMENTAL STAGE: Expressed predominantly at the S-phase of the cell cycle. {ECO:0000269|PubMed:16399800}. TISSUE SPECIFICITY: Expressed in roots, cauline and rosette leaves, stems and flowers. {ECO:0000269|PubMed:16399800, ECO:0000269|PubMed:21614643}. locus:2092030; AT5G40942,AT3G27060 ribonucleoside-diphosphate reductase small Os06g0127900 protein (Putative ribonucleotide reductase R2) (Ribonucleotide diphosphate reductase small subunit 2) (cDNA clone:J033022H19, full insert sequence),Os06g0257450 protein (Putative ribonucleotide reductase R2) (Ribonucleotide diphosphate reductase small subunit 1) Q5VRJ6,Q652F0 Q5VRJ6_ORYSJ,Q652F0_ORYSJ RnrS2 Os06g0127900 OsJ_19968 OSJNBa0038F22.22 OSNPB_060127900,RnrS1 Os06g0257450 OSNPB_060257450 P0603C10.13 P0624H09.36 ENOG411DTH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DTH7 AP2 P47927 AP2_ARATH Floral homeotic protein APETALA 2 Additive phenotype in the first and fourth whorls. Second-whorl organs of the double mutant were more completely converted to stamens or were missing entirely.,The enhancement of the second-whorl phenotypes in these double mutants resulted from AG misexpression.,In the double mutants first-whorl carpels and staminoid carpels were often wider than in ap2-2. These organs had the appearance of several fused organs but were only connected to the base of the flower in the central part of the organ and were in a position normally occupied by a single organ. In addition first-whorl organs were often fused along much of their length. All of the first-whorl organs were sometimes fused such that the fourth whorl carpel poked through a ring of tissue. Cells present along the margin of fusion resembled the epidermal cells normally present on the abaxial replum of wild-type carpels.,The number of first whorl organs in the double mutant was slightly increased compared with ap2-2 single mutants. No second-whorl organs were present in the double mutant and the third and fourth whorls had an additive phenotype.,Reduced meristem size; abnormal phyllotaxy;variable floral organ number.,Early termination of apical meristem at a variety of stages vegetative and reproductive. Homeotic floral transformations-J. Okamuro-1994 FUNCTION: Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. MISCELLANEOUS: Mutations in the APETALA2 gene result in the ectopic expression of AGAMOUS, leading to the replacement of sepals by carpels and stamens and of petals by stamens. 47833 Floral homeotic protein APETALA 2 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; meristem maintenance [GO:0010073]; plant ovule development [GO:0048481]; seed development [GO:0048316]; specification of floral organ identity [GO:0010093]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. locus:2005493; AT4G36920 floral homeotic protein APETALA Os04g0649100 protein (Fragment),Os04g0649100 protein C7J172,A0A0N7KJT8,A0A0P0WFX1 C7J172_ORYSJ,A0A0N7KJT8_ORYSJ,A0A0P0WFX1_ORYSJ Os04g0649100 Os04g0649100 OSNPB_040649100,Os04g0649100 OSNPB_040649100 ENOG411DTH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4-coumarate--CoA ligase-like NA NA NA NA NA NA NA ENOG411DTH1 GGH1,GGH2 Q9SYL6,O65355,F4IBT7 GGH1_ARATH,GGH2_ARATH,F4IBT7_ARATH Gamma-glutamyl hydrolase 1 (AtGGH1) (EC 3.4.19.9) (Conjugase) (GH) (Gamma-Glu-X carboxypeptidase),Gamma-glutamyl hydrolase 2 (AtGGH2) (EC 3.4.19.9) (Conjugase) (GH) (Gamma-Glu-X carboxypeptidase),Gamma-glutamyl hydrolase 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21070406}. FUNCTION: Cleaves the polyglutamate sidechains of folate polyglutamates in the vacuole. Is important for polyglutamyl tail length determination before vacuolar exit. Plays a role in folate stability and intracellular folate content. {ECO:0000269|PubMed:21070406}.,FUNCTION: Cleaves the polyglutamate sidechains of folate polyglutamates in the vacuole. Is important for polyglutamyl tail length determination before vacuolar exit. Plays a role on folate stability and intracellular folate content. Has endopeptidase activity against 4-amino-10-methylpteroyl penta-, tetra-, tri- and di-gamma-L-glutamate substrates and is responsible for the production of folic acid, also called pteroylglutamic acid (PteGlu) from teroylpolyglutamates. {ECO:0000269|PubMed:21070406}. R-ATH-6798695; 3.4.19.9; 3.4.19.9 39057,38642,36957 Gamma-glutamyl hydrolase 1 (AtGGH1) (EC 3.4.19.9) (Conjugase) (GH) (Gamma-Glu-X carboxypeptidase),Gamma-glutamyl hydrolase 2 (AtGGH2) (EC 3.4.19.9) (Conjugase) (GH) (Gamma-Glu-X carboxypeptidase),Gamma-glutamyl hydrolase 2 cell wall [GO:0005618]; extracellular space [GO:0005615]; vacuole [GO:0005773]; gamma-glutamyl-peptidase activity [GO:0034722]; omega peptidase activity [GO:0008242]; tetrahydrofolylpolyglutamate metabolic process [GO:0046900],omega peptidase activity [GO:0008242] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and siliques. {ECO:0000269|PubMed:21070406}.,TISSUE SPECIFICITY: Expressed in roots, in leaves, stems and siliques. {ECO:0000269|PubMed:21070406}. locus:2037583;,locus:2037603; AT1G78660,AT1G78680 gamma-glutamyl hydrolase Gamma-glutamyl hydrolase (EC 3.4.19.9),Os05g0517500 protein (Fragment) Q75II5,A0A0P0WPJ5 Q75II5_ORYSJ,A0A0P0WPJ5_ORYSJ Os05g0517500 Os05g0517500 B1130G10.17 OsJ_19214 OSNPB_050517500,Os05g0517500 OSNPB_050517500 ENOG411DTH2 TRM11 Q9LIN4 Q9LIN4_ARATH Uncharacterized protein At3g26410 (tRNA modification 11 protein) Short roots; Early flowering-B. Zheng-2010 54639 Uncharacterized protein At3g26410 (tRNA modification 11 protein) methyltransferase activity [GO:0008168]; nucleic acid binding [GO:0003676]; 2-methylguanosine metabolic process [GO:0080180]; tRNA modification [GO:0006400] locus:2079261; AT3G26410 tRNA guanosine-2'-O-methyltransferase TRM11 homolog Os02g0556400 protein (cDNA, clone: J065152D03, full insert sequence) B7F8R5 B7F8R5_ORYSJ Os02g0556400 OSNPB_020556400 ENOG411DTH3 APUM1,APUM2,APUM3,APUM4 Q9ZW07,Q9ZW06,Q9ZW02,Q9SS47 PUM1_ARATH,PUM2_ARATH,PUM3_ARATH,PUM4_ARATH Pumilio homolog 1 (APUM-1) (AtPUM1),Pumilio homolog 2 (APUM-2) (AtPUM2),Pumilio homolog 3 (APUM-3) (AtPUM3),Pumilio homolog 4 (APUM-4) (AtPUM4) FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2. {ECO:0000269|PubMed:19682068}. 106563,106655,105987,111613 Pumilio homolog 1 (APUM-1) (AtPUM1),Pumilio homolog 2 (APUM-2) (AtPUM2),Pumilio homolog 3 (APUM-3) (AtPUM3),Pumilio homolog 4 (APUM-4) (AtPUM4) cytoplasm [GO:0005737]; mRNA binding [GO:0003729]; regulation of translation [GO:0006417],cytosol [GO:0005829]; mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; regulation of translation [GO:0006417],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729]; regulation of translation [GO:0006417] locus:2043182;,locus:2043187;,locus:2043047;,locus:2076324; AT2G29200,AT2G29190,AT2G29140,AT3G10360 pumilio homolog Os12g0574400 protein (Pumilio-family RNA binding repeat containing protein, expressed),Os05g0109600 protein (cDNA, clone: J065036M21, full insert sequence),Os01g0971900 protein (Putative pumilio domain-containing protein PPD1),Os01g0844800 protein (cDNA clone:J013098A15, full insert sequence),Os01g0844800 protein (Fragment),Os02g0819300 protein,Os05g0327100 protein (Fragment) Q2QN93,B7F8F5,Q5JMD6,Q0JHT2,A0A0P0VA70,A0A0P0VRF7,A0A0P0VA82,A0A0P0WKY6 Q2QN93_ORYSJ,B7F8F5_ORYSJ,Q5JMD6_ORYSJ,Q0JHT2_ORYSJ,A0A0P0VA70_ORYSJ,A0A0P0VRF7_ORYSJ,A0A0P0VA82_ORYSJ,A0A0P0WKY6_ORYSJ Os12g0574400 LOC_Os12g38590 Os12g0574400 OSNPB_120574400,Os05g0109600 OSNPB_050109600,Os01g0971900 Os01g0971900 OsJ_04928 OSNPB_010971900 P0518C01.18,Os01g0844800 Os01g0844800 OSNPB_010844800,Os01g0844800 OSNPB_010844800,Os02g0819300 OSNPB_020819300,Os05g0327100 OSNPB_050327100 ENOG411DTH8 CK1 Q9M9H6,Q8L518 CK1_ARATH,CK2_ARATH Probable choline kinase 1 (AtCK1) (EC 2.7.1.32),Probable choline kinase 2 (EC 2.7.1.32) FUNCTION: Involved in phospholipid biosynthesis. Catalyzes the first step in phosphatidylcholine biosynthesis (By similarity). {ECO:0000250}. PATHWAY: Phospholipid metabolism; phosphatidylcholine biosynthesis; phosphocholine from choline: step 1/1. ARA:AT1G71697-MONOMER;,ARA:AT1G74320-MONOMER; R-ATH-1483191;R-ATH-1483213; 2.7.1.32 40016,41017 Probable choline kinase 1 (AtCK1) (EC 2.7.1.32),Probable choline kinase 2 (EC 2.7.1.32) ATP binding [GO:0005524]; choline kinase activity [GO:0004103]; response to wounding [GO:0009611],ATP binding [GO:0005524]; choline kinase activity [GO:0004103] TISSUE SPECIFICITY: Expressed in roots. Expressed at low levels in cauline leaves and flowers. {ECO:0000269|PubMed:9342878}. locus:2824546;,locus:2019612; AT1G71697,AT1G74320 choline ethanolamine Os01g0183000 protein,Os01g0717000 protein (Putative choline kinase CK2) (cDNA clone:J013002I15, full insert sequence) (cDNA clone:J013081L11, full insert sequence),Choline kinase-like (Os01g0717000 protein),Os05g0535400 protein (Putative choline kinase),Os01g0717000 protein (Fragment) Q0JQ41,Q5JMB6,Q5JMB5,Q75KT7,A0A0P0V7D0 Q0JQ41_ORYSJ,Q5JMB6_ORYSJ,Q5JMB5_ORYSJ,Q75KT7_ORYSJ,A0A0P0V7D0_ORYSJ Os01g0183000 Os01g0183000 OSNPB_010183000,P0683B11.20-1 Os01g0717000 OsJ_03257 OSNPB_010717000,P0683B11.20-2 Os01g0717000 OSNPB_010717000,Os05g0535400 OJ1014_C08.11 OJ1741_B01.3 OsJ_19343 OSNPB_050535400,Os01g0717000 OSNPB_010717000 ENOG411DTH9 OVA2 Q8RXK8,F4K4Q2 SYIM_ARATH,F4K4Q2_ARATH Isoleucine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.5) (Isoleucyl-tRNA synthetase) (IleRS) (Protein OVULE ABORTION 2),tRNA synthetase class I (I, L, M and V) family protein DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterozygous plants 42% of ovules are aborted compared to 11% of ovules of wild type siblings. Ovule abortion; Male and female gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 ARA:GQT-2807-MONOMER; 6.1.1.5 123008,143391 Isoleucine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.5) (Isoleucyl-tRNA synthetase) (IleRS) (Protein OVULE ABORTION 2),tRNA synthetase class I (I, L, M and V) family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; isoleucine-tRNA ligase activity [GO:0004822]; metal ion binding [GO:0046872]; tRNA binding [GO:0000049]; isoleucyl-tRNA aminoacylation [GO:0006428]; plant ovule development [GO:0048481],cytoplasm [GO:0005737]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; isoleucine-tRNA ligase activity [GO:0004822]; isomerase activity [GO:0016853]; tRNA binding [GO:0000049]; isoleucyl-tRNA aminoacylation [GO:0006428] locus:2154349; AT5G49030 Isoleucyl-tRNA synthetase Os02g0778200 protein (Putative isoleucyl-tRNA synthetase),Os02g0778200 protein (Fragment) Q6ZGC2,A0A0P0VQE5 Q6ZGC2_ORYSJ,A0A0P0VQE5_ORYSJ Os02g0778200 Os02g0778200 OJ1534_E09.23 OsJ_08590 OSNPB_020778200,Os02g0778200 OSNPB_020778200 ENOG411DWH8 CSP41A Q9LYA9 CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic (CSP41-a) DISRUPTION PHENOTYPE: Lethal when associated with CSP41B disruption. {ECO:0000269|PubMed:18398686}. Pale green seedlings short shoots short siliques and reduced seed set. Mutants do not accumulate CSP41b protein and CSP41a protein levels are reduced. FUNCTION: Binds and cleaves RNA, particularly in stem-loops. Associates with pre-ribosomal particles in chloroplasts, and participates in chloroplast ribosomal RNA metabolism, probably during the final steps of 23S rRNA maturation. May enhance transcription by the plastid-encoded polymerase and translation in plastid via the stabilization of ribosome assembly intermediates. Required for chloroplast integrity. Involved in the regulation of the circadian system. {ECO:0000269|PubMed:18398686, ECO:0000269|PubMed:19067181}. 43930 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic (CSP41-a) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; plastoglobule [GO:0010287]; ribosome [GO:0005840]; stromule [GO:0010319]; thylakoid [GO:0009579]; catalytic activity [GO:0003824]; coenzyme binding [GO:0050662]; poly(U) RNA binding [GO:0008266]; rRNA binding [GO:0019843]; chloroplast organization [GO:0009658]; circadian rhythm [GO:0007623]; plastid translation [GO:0032544]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of translation [GO:0045727]; response to cytokinin [GO:0009735]; rRNA processing [GO:0006364] locus:2099222; AT3G63140 NAD dependent epimerase/dehydratase family Os02g0316800 protein (Fragment),Os07g0212200 protein (Putative mRNA binding protein) Q0E1Q7,Q8GTK8 Q0E1Q7_ORYSJ,Q8GTK8_ORYSJ Os02g0316800 Os02g0316800 OSNPB_020316800,OJ1664_D08.107 Os07g0212200 OsJ_23541 OSJNBb0042J07.14 OSNPB_070212200 ENOG411DWH2 SLAC1,SLAH3 Q9LD83,Q9FLV9,A0A1R7T388 SLAC1_ARATH,SLAH3_ARATH,A0A1R7T388_ARATH Guard cell S-type anion channel SLAC1 (Protein CARBON DIOXIDE INSENSITIVE 3) (Protein OZONE-SENSITIVE 1) (Protein RADICAL-INDUCED CELL DEATH 3) (Protein SLOW ANION CHANNEL-ASSOCIATED 1),S-type anion channel SLAH3 (SLAC1-homolog protein 3),SLAC1 homologue 3 DISRUPTION PHENOTYPE: Constitutively higher stomatal conductance with over-accumulation of the osmoregulatory anions in guard cell. Impaired slow (S-type) anion channel currents that are activated by cytosolic calcium ions and abscisic acid (ABA) (normally leading to a decrease in stomatal conductance). Higher sensitivity to ozone. Increased water loss associated with a constitutive stomatal opening phenotype. Reduced circadian leaf turgor changes. {ECO:0000269|PubMed:18084014, ECO:0000269|PubMed:18305482, ECO:0000269|PubMed:18305484, ECO:0000269|PubMed:19955405, ECO:0000269|PubMed:20128877, ECO:0000269|PubMed:20345603, ECO:0000269|Ref.4}. Sensitive to ozone-H. Saji-2008 FUNCTION: Slow, weak voltage-dependent S-type anion efflux channel involved in maintenance of anion homeostasis. Cl(-) efflux through SLAC1 causes membrane depolarization, which activates outward-rectifying K1 channels, leading to KCl and water efflux to reduce turgor further and cause stomatal closure, that reduces water loss and promotes leaf turgor. Essential for stomatal closure in response to CO(2), abscisic acid (ABA), ozone O(3), light/dark transitions, humidity change, calcium ions, hydrogen peroxide H(2)O(2), reactive oxygen species (ROS), and nitric oxide. Binds to the highly selective inward-rectifying potassium channels KAT1 and AKT2, and inhibits their actvities. Functions as an essential negative regulator of inward potassium channels in guard cells. Essential for the efficient stomatal closure and opening in guard cells (PubMed:27002025). {ECO:0000269|PubMed:18084014, ECO:0000269|PubMed:18305482, ECO:0000269|PubMed:18305484, ECO:0000269|PubMed:19955405, ECO:0000269|PubMed:19955427, ECO:0000269|PubMed:20128877, ECO:0000269|PubMed:20345603, ECO:0000269|PubMed:27002025, ECO:0000269|Ref.4}.,FUNCTION: Slow, weak voltage-dependent S-type anion efflux channel involved in maintenance of anion homeostasis (PubMed:18305482). Binds to the highly selective inward-rectifying potassium channel KAT1 and inhibits its activity. Functions as an essential negative regulator of inward potassium channels in guard cells. Essential for the efficient stomatal closure and opening in guard cells (PubMed:27002025). {ECO:0000269|PubMed:18305482, ECO:0000269|PubMed:27002025}. 63235,72339,58035 Guard cell S-type anion channel SLAC1 (Protein CARBON DIOXIDE INSENSITIVE 3) (Protein OZONE-SENSITIVE 1) (Protein RADICAL-INDUCED CELL DEATH 3) (Protein SLOW ANION CHANNEL-ASSOCIATED 1),S-type anion channel SLAH3 (SLAC1-homolog protein 3),SLAC1 homologue 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; anion transmembrane transporter activity [GO:0008509]; protein kinase binding [GO:0019901]; protein phosphatase binding [GO:0019903]; voltage-gated anion channel activity [GO:0008308]; abscisic acid-activated signaling pathway [GO:0009738]; anion transport [GO:0006820]; cellular ion homeostasis [GO:0006873]; inorganic anion transport [GO:0015698]; multicellular organismal water homeostasis [GO:0050891]; organic anion transport [GO:0015711]; regulation of stomatal opening [GO:1902456]; response to abscisic acid [GO:0009737]; response to carbon dioxide [GO:0010037]; response to humidity [GO:0009270]; response to ozone [GO:0010193]; stomatal closure [GO:0090332]; stomatal movement [GO:0010118],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; voltage-gated anion channel activity [GO:0008308]; cellular ion homeostasis [GO:0006873]; chloride transport [GO:0006821]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],cell [GO:0005623]; integral component of membrane [GO:0016021]; voltage-gated anion channel activity [GO:0008308]; cellular ion homeostasis [GO:0006873] TISSUE SPECIFICITY: Preferentially expressed in guard cells. Also detected in the vascular strands close to the leaf margins. {ECO:0000269|PubMed:18305482, ECO:0000269|PubMed:18305484, ECO:0000269|PubMed:19955405}.,TISSUE SPECIFICITY: Expressed in the whole plant, escpecially in vascular systems. {ECO:0000269|PubMed:18305482}. locus:2034700;,locus:2178722; AT1G12480,AT5G24030 C4-dicarboxylate transporter malic acid transport protein Os01g0226600 protein,OSJNBa0019K04.20 protein (Os04g0574700 protein),Os01g0623200 protein,Os07g0181100 protein (cDNA clone:002-148-F12, full insert sequence),Os01g0226600 protein (cDNA clone:J023143J08, full insert sequence),Os01g0385400 protein (Fragment),Os06g0189300 protein Q5NAK4,Q7XTX7,B9EY47,Q6ZLB6,Q5NAK3,A0A0P0V3C6,A0A0P0WTX6 Q5NAK4_ORYSJ,Q7XTX7_ORYSJ,B9EY47_ORYSJ,Q6ZLB6_ORYSJ,Q5NAK3_ORYSJ,A0A0P0V3C6_ORYSJ,A0A0P0WTX6_ORYSJ P0443E07.25-1 Os01g0226600 OSNPB_010226600,Os04g0574700 Os04g0574700 OSJNBa0019K04.20 OSNPB_040574700,Os01g0623200 OsJ_02656 OSNPB_010623200,Os07g0181100 OJ1014_E09.31 OSNPB_070181100,P0443E07.25-2 Os01g0226600 OSNPB_010226600,Os01g0385400 OSNPB_010385400,Os06g0189300 OSNPB_060189300 ENOG411DTHT MBD9 Q9SGH2 MBD9_ARATH Methyl-CpG-binding domain-containing protein 9 (AtMBD9) (MBD09) (EC 2.3.1.48) (Histone acetyl transferase MBD9) (Methyl-CpG-binding protein MBD9) DISRUPTION PHENOTYPE: Over-methylated genomic DNA. Increased shoot branching and reduced transcription of FLC leading to early flowering, associated with a decrease in the acetylation level in histone H3 and H4 of FLC chromatin. {ECO:0000269|PubMed:16623890, ECO:0000269|PubMed:19419532}. Early flowering phenotype. The lateral shoot branching capacity of the mutant plants was higher than that of wild-type plants. The mutant plants were about 30% shorter than the wild type in stature. Increased branching; Early flowering-S. Rothstein-2006 FUNCTION: Probable transcriptional regulator that acts as a histone acetyltransferase. Mediates the acetylation of histone H3 and H4 of target loci (e.g. FLC). Involved in an auxin-independent regulation of shoot branching and flowering time. {ECO:0000269|PubMed:16623890, ECO:0000269|PubMed:19419532}. 2.3.1.48 240431 Methyl-CpG-binding domain-containing protein 9 (AtMBD9) (MBD09) (EC 2.3.1.48) (Histone acetyl transferase MBD9) (Methyl-CpG-binding protein MBD9) nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; histone acetyltransferase activity [GO:0004402]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; methyl-CpG binding [GO:0008327]; ubiquitin protein ligase activity [GO:0061630]; histone acetylation [GO:0016573]; histone H3 acetylation [GO:0043966]; histone H4 acetylation [GO:0043967]; maintenance of DNA methylation [GO:0010216]; photoperiodism, flowering [GO:0048573]; protein ubiquitination [GO:0016567]; regulation of methylation-dependent chromatin silencing [GO:0090308]; regulation of transcription, DNA-templated [GO:0006355]; secondary shoot formation [GO:0010223]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, buds, flowers and stems. {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:19419532}. locus:2096672; AT3G01460 methyl-CpG-binding domain-containing protein 9-like Os02g0192400 protein (Fragment) A0A0P0VFU0,A0A0N7KEU8 A0A0P0VFU0_ORYSJ,A0A0N7KEU8_ORYSJ Os02g0192400 OSNPB_020192400 ENOG411DTHU CHUP1 Q9LI74,A0A1I9LT48,F4JA42 CHUP1_ARATH,A0A1I9LT48_ARATH,F4JA42_ARATH Protein CHUP1, chloroplastic (Protein CHLOROPLAST UNUSUAL POSITIONING 1),Hydroxyproline-rich glycoprotein family protein DISRUPTION PHENOTYPE: Defective in chloroplast photorelocation movement, leading to damage of the photosynthetic apparatus and subsequent bleaching of leaf color and necrosis under high light conditions. Chloroplasts gathered at the bottom of cells, regardless of the light conditions. {ECO:0000269|PubMed:14615600}. Abnormal chloroplast positioning-M. Wada-2009 FUNCTION: Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton. {ECO:0000269|PubMed:12490952, ECO:0000269|PubMed:14615600, ECO:0000269|PubMed:18193273, ECO:0000269|PubMed:18715957}. 111912,112198,95216 Protein CHUP1, chloroplastic (Protein CHLOROPLAST UNUSUAL POSITIONING 1),Hydroxyproline-rich glycoprotein family protein chloroplast [GO:0009507]; chloroplast outer membrane [GO:0009707]; chloroplast relocation [GO:0009902] TISSUE SPECIFICITY: Expressed in cauline leaves, rosette leaves, stems and flowers, but not in roots. {ECO:0000269|PubMed:14615600}. locus:2102385; AT3G25690 Chloroplast unusual positioning Expressed protein (Os12g0105300 protein),Os11g0105750 protein,Os12g0105300 protein (Fragment) A3CE59,B9GBE2,A0A0P0Y5X5 A3CE59_ORYSJ,B9GBE2_ORYSJ,A0A0P0Y5X5_ORYSJ Os12g0105300 LOC_Os12g01449 OsJ_34925 OSNPB_120105300,Os11g0105750 OsJ_34916 OSNPB_110105750,Os12g0105300 OSNPB_120105300 ENOG411DTHV Q9SRU7,Q9LFU5 TRM2_ARATH,TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 (EC 2.1.1.216) (tRNA 2,2-dimethylguanosine-26 methyltransferase 2) (tRNA(guanine-26,N(2)-N(2)) methyltransferase 2) (tRNA(m(2,2)G26)dimethyltransferase 2),Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 (EC 2.1.1.216) (tRNA 2,2-dimethylguanosine-26 methyltransferase 1) (tRNA(guanine-26,N(2)-N(2)) methyltransferase 1) (tRNA(m(2,2)G26)dimethyltransferase 1) FUNCTION: Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. {ECO:0000250}. 2.1.1.216 65604,65845 Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 (EC 2.1.1.216) (tRNA 2,2-dimethylguanosine-26 methyltransferase 2) (tRNA(guanine-26,N(2)-N(2)) methyltransferase 2) (tRNA(m(2,2)G26)dimethyltransferase 2),Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 (EC 2.1.1.216) (tRNA 2,2-dimethylguanosine-26 methyltransferase 1) (tRNA(guanine-26,N(2)-N(2)) methyltransferase 1) (tRNA(m(2,2)G26)dimethyltransferase 1) mitochondrion [GO:0005739]; nucleus [GO:0005634]; tRNA (guanine-N2-)-methyltransferase activity [GO:0004809]; tRNA binding [GO:0000049]; tRNA N2-guanine methylation [GO:0002940] locus:2074552; AT3G02320,AT5G15810 N(2)N(2)-dimethylguanosine tRNA methyltransferase tRNA (guanine(26)-N(2))-dimethyltransferase (EC 2.1.1.216) Q339G6,Q6F3B7 Q339G6_ORYSJ,Q6F3B7_ORYSJ LOC_Os10g21360 Os10g0357800 OsJ_31209 OSNPB_100357800,LOC_Os03g57280 Os03g0786700 OSJNBb0024J04.3 OSNPB_030786700 ENOG411DTHQ NAC074 O49461,Q8GUJ6 O49461_ARATH,Q8GUJ6_ARATH NAC domain containing protein 74 (NAM / CUC2-like protein),At4g28530 (NAC domain containing protein 74) (NAM / CUC2-like protein) 36035,40432 NAC domain containing protein 74 (NAM / CUC2-like protein),At4g28530 (NAC domain containing protein 74) (NAM / CUC2-like protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2121323; AT4G28530 (No apical meristem) protein NAC transcription factor (OSJNBb0070J16.15 protein) (OSJNBb0072M01.11 protein) (Os04g0515900 protein) (cDNA clone:001-109-C12, full insert sequence),NAC-domain containing protein 21/22, putative, expressed (Os10g0477600 protein) (Putative NAM (No apical meristem) protein) (cDNA clone:002-106-A07, full insert sequence),NAC-domain containing protein 21/22, putative, expressed (Os03g0109000 protein) (cDNA clone:J023051N16, full insert sequence) Q7X7J4,Q9AV06,Q10SW5 Q7X7J4_ORYSJ,Q9AV06_ORYSJ,Q10SW5_ORYSJ OSJNBb0072M01.11 NAC8 Os04g0515900 OSJNBb0070J16.15 OSNPB_040515900,LOC_Os10g33760 Os10g0477600 OSJNBa0026O12.6 OSNPB_100477600,LOC_Os03g01870 Os03g0109000 OsJ_09117 OSNPB_030109000 ENOG411DTHX IBI1 Q9M084,Q8H104 SYDC2_ARATH,SYDC1_ARATH Aspartate--tRNA ligase 2, cytoplasmic (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS) (Protein IMPAIRED IN BABA-INDUCED DISEASE IMMUNITY 1),Aspartate--tRNA ligase 1, cytoplasmic (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS) FUNCTION: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA (By similarity). Involved in the perception of beta-aminobutyric acid (BABA) and required for BABA priming effect in disease resistance (PubMed:24776930). {ECO:0000250|UniProtKB:P14868, ECO:0000269|PubMed:24776930}.,FUNCTION: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:P14868}. ARA:AT4G31180-MONOMER;,ARA:AT4G26870-MONOMER; 6.1.1.12 62918,60333 Aspartate--tRNA ligase 2, cytoplasmic (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS) (Protein IMPAIRED IN BABA-INDUCED DISEASE IMMUNITY 1),Aspartate--tRNA ligase 1, cytoplasmic (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; aspartate-tRNA ligase activity [GO:0004815]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; aspartyl-tRNA aminoacylation [GO:0006422]; defense response to fungus [GO:0050832]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; plasmodesma [GO:0009506]; aspartate-tRNA ligase activity [GO:0004815]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; aspartyl-tRNA aminoacylation [GO:0006422]; response to cadmium ion [GO:0046686] locus:2126306;,locus:2116397; AT4G31180,AT4G26870 Aspartyl-tRNA synthetase Os02g0686400 protein (Putative aspartate-tRNA ligase) (cDNA clone:J013093E04, full insert sequence) Q6ZHC3 Q6ZHC3_ORYSJ Os02g0686400 OJ1717_A09.34 OsJ_07966 OSNPB_020686400 ENOG411DTHZ Q6NPP7,F4HPI7 Q6NPP7_ARATH,F4HPI7_ARATH Patatin (EC 3.1.1.-) FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. R-ATH-1482883;R-ATH-163560; 3.1.1.- 40567,31468 Patatin (EC 3.1.1.-) cytoplasm [GO:0005737]; lipid droplet [GO:0005811]; membrane [GO:0016020]; transferase activity [GO:0016740]; triglyceride lipase activity [GO:0004806]; lipid homeostasis [GO:0055088]; triglyceride catabolic process [GO:0019433],hydrolase activity [GO:0016787]; transferase activity [GO:0016740]; lipid catabolic process [GO:0016042] locus:2196685; AT1G33270 Patatin-like phospholipase Patatin (EC 3.1.1.-) Q0IS87 Q0IS87_ORYSJ Os11g0546300 OSNPB_110546300 FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411DTHD APC8 Q9STS3,A0A1I9LQT2 CDC23_ARATH,A0A1I9LQT2_ARATH Anaphase-promoting complex subunit 8 (Cell division cycle protein 23 homolog) (CDC23 homolog) (Cyclosome subunit 8),Anaphase-promoting complex subunit 8 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. PATHWAY: Protein modification; protein ubiquitination. R-ATH-174184; 67135,54414 Anaphase-promoting complex subunit 8 (Cell division cycle protein 23 homolog) (CDC23 homolog) (Cyclosome subunit 8),Anaphase-promoting complex subunit 8 anaphase-promoting complex [GO:0005680]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein ubiquitination [GO:0016567]; regulation of defense response [GO:0031347]; regulation of mitotic metaphase/anaphase transition [GO:0030071],anaphase-promoting complex [GO:0005680]; regulation of mitotic metaphase/anaphase transition [GO:0030071] locus:2100439; AT3G48150 anaphase-promoting complex subunit Os02g0656300 protein (Putative cell division cycle protein 23),Os06g0679100 protein Q6H6H0,A0A0P0WZY5 Q6H6H0_ORYSJ,A0A0P0WZY5_ORYSJ Os02g0656300 Os02g0656300 OsJ_07790 OSNPB_020656300 P0519E06.25,Os06g0679100 OSNPB_060679100 ENOG411DTHE HCF152 Q9SF38 PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 152) FUNCTION: Involved in the processing of polycistronic chloroplast psbB-psbT-psbH-petB-petD transcript. Could bind RNA. {ECO:0000269|PubMed:11549768, ECO:0000269|PubMed:12782738}. 86961 Pentatricopeptide repeat-containing protein At3g09650, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 152) chloroplast stroma [GO:0009570]; endonuclease activity [GO:0004519]; mRNA binding [GO:0003729]; nucleotide binding [GO:0000166]; mRNA processing [GO:0006397]; RNA modification [GO:0009451] locus:2074924; AT3G09650 Pentatricopeptide repeat-containing protein Os11g0103000 protein (Pentatricopeptide, putative),Os12g0102600 protein (Pentatricopeptide, putative, expressed) Q2RBQ4,Q2QYY1 Q2RBQ4_ORYSJ,Q2QYY1_ORYSJ Os11g0103000 LOC_Os11g01210 Os11g0103000 OSNPB_110103000,Os12g0102600 LOC_Os12g01210 OSNPB_120102600 ENOG411DTHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os08g0500600 protein (Fragment) A0A0P0XI18 A0A0P0XI18_ORYSJ Os08g0500600 OSNPB_080500600 ENOG411DTHA RNL Q0WL81 RNL_ARATH tRNA ligase 1 (AtRLG1) (AtRNL) (AtRlg1p) (EC 6.5.1.3) (Protein AT.I.24-9) DISRUPTION PHENOTYPE: Abnormal auxin responses leading to altered root physiology (e.g. elongation, meristem morphology and gravitropism) and aberrations in cotyledon number and venation. At later developmental stages, reduced apical dominance and aberrations in lateral organ positioning at inflorescence stems. {ECO:0000269|PubMed:25892242}. FUNCTION: Essential component of stress-response pathways entailing repair of RNA breaks with 2',3'-cyclic phosphate and 5'-OH ends (PubMed:23515942). Tri-functional enzyme that repairs RNA breaks with 2',3'-cyclic-PO(4) and 5'-OH ends. The ligation activity requires three sequential enzymatic activities: opening of the 2'3'-cyclic phosphodiester bond of the 5' half-tRNA leaving a 2'-phosphomonoester (CPDase activity), phosphorylation of the 5' terminus of the 3' half-tRNA in the presence of ATP (kinase activity) and ligation of the two tRNA halves in an ATP-dependent reaction (ligase activity) (PubMed:24554441, PubMed:23515942). Deficient in transferring AMP to pRNA(OH) to form AppRNA(OH) but proficient at sealing pre-adenylylated AppRNA(OH) (PubMed:23515942). CPDase and kinase reactions are almost insensitive to RNA length, whereas the ligase activity decreases with shorter RNA size. Can also splice DNA ended by a single 3'-terminal ribonucleoside 2',3'-cyclic-PO(4) (PubMed:24554441). Binds to mRNA, mature and immature (PubMed:20844078). Exhibits tRNA ligase activity in vitro (PubMed:15653639, PubMed:24554441). Required for the splicing of precursor tRNA molecules containing introns (PubMed:16428247, PubMed:20844078). Can circularize an intron cleaved from a pre-tRNA by splicing endonuclease in vitro (PubMed:20844078). Seems not involved in unfolded protein response (UPR) in the endoplasmic reticulum (PubMed:20844078). Involved in auxin signaling and polar transport during organ morphogenesis (PubMed:25892242). {ECO:0000269|PubMed:15653639, ECO:0000269|PubMed:16428247, ECO:0000269|PubMed:20844078, ECO:0000269|PubMed:23515942, ECO:0000269|PubMed:24554441, ECO:0000269|PubMed:25892242}. ARA:AT1G07910-MONOMER; 6.5.1.3 123205 tRNA ligase 1 (AtRLG1) (AtRNL) (AtRlg1p) (EC 6.5.1.3) (Protein AT.I.24-9) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; endonuclease activity [GO:0004519]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA ligase (ATP) activity [GO:0003972]; auxin-activated signaling pathway [GO:0009734]; regulation of auxin mediated signaling pathway [GO:0010928]; RNA repair [GO:0042245]; translation [GO:0006412]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388] DEVELOPMENTAL STAGE: During lateral root formation, already visible in stage I lateral root primordia, and accumulates at strong levels during later stages of root development. {ECO:0000269|PubMed:25892242}. TISSUE SPECIFICITY: Mainly expressed in proliferating cells and tissues such as root meristems, the vasculature of developing plantlets, flowers and elongating tissue. {ECO:0000269|PubMed:25892242}. locus:2205085; AT1G07910 NA Os07g0191700 protein (Putative translation elongation factor EF-1 alpha) (cDNA clone:J013066C04, full insert sequence) (cDNA clone:J033143I15, full insert sequence) Q69S66 Q69S66_ORYSJ Os07g0191700 Os07g0191700 OsJ_23409 OSJNBa0049I08.10 OSNPB_070191700 ENOG411DTHB AT3G27470.1,AT1G13000.1,AT1G08040.1,AT1G67850.1 Q9LN03,Q8RXE2,Q56Y17,Q8VYF6,Q93ZR2,Q94F37,A0A1P8AMP7,A0A1P8AV11,A0A1P8AVT8,A0A1I9LSL9 Q9LN03_ARATH,Q8RXE2_ARATH,Q56Y17_ARATH,Q8VYF6_ARATH,Q93ZR2_ARATH,Q94F37_ARATH,A0A1P8AMP7_ARATH,A0A1P8AV11_ARATH,A0A1P8AVT8_ARATH,A0A1I9LSL9_ARATH T6D22.13 (Zinc finger (C3HC4-type RING finger) family protein),Lysine ketoglutarate reductase trans-splicing protein (Lysine ketoglutarate reductase trans-splicing protein (DUF707)) (Uncharacterized protein At3g27473),Trimethylguanosine synthase (DUF707) (Uncharacterized protein At2g28310),Transmembrane protein, putative (DUF707) (Uncharacterized protein At1g13000),Putative storage protein (Trimethylguanosine synthase) (Trimethylguanosine synthase (DUF707)),AT1G67850 protein (At1g67850/F12A21_2) (Lysine ketoglutarate reductase trans-splicing protein (DUF707)),Lysine ketoglutarate reductase trans-splicing protein (DUF707),Trimethylguanosine synthase (DUF707),Transmembrane protein, putative (DUF707) 70118,46596,43182,45850,43869,46019,44281,43557,38886,47677 T6D22.13 (Zinc finger (C3HC4-type RING finger) family protein),Lysine ketoglutarate reductase trans-splicing protein (Lysine ketoglutarate reductase trans-splicing protein (DUF707)) (Uncharacterized protein At3g27473),Trimethylguanosine synthase (DUF707) (Uncharacterized protein At2g28310),Transmembrane protein, putative (DUF707) (Uncharacterized protein At1g13000),Putative storage protein (Trimethylguanosine synthase) (Trimethylguanosine synthase (DUF707)),AT1G67850 protein (At1g67850/F12A21_2) (Lysine ketoglutarate reductase trans-splicing protein (DUF707)),Lysine ketoglutarate reductase trans-splicing protein (DUF707),Trimethylguanosine synthase (DUF707),Transmembrane protein, putative (DUF707) plasma membrane [GO:0005886],transferase activity, transferring glycosyl groups [GO:0016757],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021] locus:2205160;,locus:2086721;,locus:2057557;,locus:2031905;,locus:2205140;,locus:2008640; AT1G08050,AT3G27470,AT2G28310,AT1G13000,AT1G08040,AT1G67850 Lysine ketoglutarate reductase trans-splicing related 1 Os02g0297600 protein (cDNA clone:J033048C01, full insert sequence),Os05g0108100 protein,Lysine ketoglutarate reductase trans-splicing related 1-like (Os01g0971200 protein) (cDNA clone:J033064F20, full insert sequence),Os01g0971200 protein (Fragment),Os01g0910400 protein (Fragment) Q6K8M0,Q65X24,Q5JME7,A0A0P0VDC6,A0A0P0VBU5 Q6K8M0_ORYSJ,Q65X24_ORYSJ,Q5JME7_ORYSJ,A0A0P0VDC6_ORYSJ,A0A0P0VBU5_ORYSJ Os02g0297600 Os02g0297600 OJ1654_A02.17 OSNPB_020297600,Os05g0108100 OsJ_16835 OSJNBa0068N01.11 OSNPB_050108100,Os01g0971200 OsJ_04921 OSNPB_010971200 P0518C01.9,Os01g0971200 OSNPB_010971200,Os01g0910400 OSNPB_010910400 ENOG411DTHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0626000 protein,OSJNBb0060E08.9 protein (Os04g0626100 protein) (cDNA clone:J013093I16, full insert sequence) A3AP70,Q0J9X9 A3AP70_ORYSJ,Q0J9X9_ORYSJ Os04g0626000 OsJ_13168 OSNPB_040626000,Os04g0626100 Os04g0626100 OsJ_13169 OSJNBb0060E08.9 OSNPB_040626100 ENOG411DTHN POLD1,EMBRYO DEFECTIVE 2780 Q9LVN7,F4KC69 DPOD1_ARATH,F4KC69_ARATH DNA polymerase delta catalytic subunit (EC 2.7.7.7) (Protein EMBRYO DEFECTIVE 2780),DNA polymerase (EC 2.7.7.7) FUNCTION: This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. MISCELLANEOUS: In eukaryotes there are five DNA polymerases: alpha, beta, gamma, delta, and epsilon which are responsible for different reactions of DNA synthesis. R-ATH-110314;R-ATH-174411;R-ATH-174414;R-ATH-174417;R-ATH-174437;R-ATH-5651801;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091;R-ATH-69166;R-ATH-69183; 2.7.7.7; 2.7.7.7 123236,125161 DNA polymerase delta catalytic subunit (EC 2.7.7.7) (Protein EMBRYO DEFECTIVE 2780),DNA polymerase (EC 2.7.7.7) delta DNA polymerase complex [GO:0043625]; 3'-5'-exodeoxyribonuclease activity [GO:0008296]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; base-excision repair, gap-filling [GO:0006287]; DNA replication proofreading [GO:0045004]; nucleotide-excision repair, DNA gap filling [GO:0006297],nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; DNA replication [GO:0006260] locus:2160816; AT5G63960 DNA polymerase DNA polymerase delta catalytic subunit (EC 2.7.7.7) Q9LRE6 DPOD1_ORYSJ POLD1 Os11g0186400 LOC_Os11g08330 FUNCTION: This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. MISCELLANEOUS: In eukaryotes there are five DNA polymerases: alpha, beta, gamma, delta, and epsilon which are responsible for different reactions of DNA synthesis. ENOG411DTHI MIF21.11 Q9LUB2,A8MS79,F4K083 Q9LUB2_ARATH,A8MS79_ARATH,F4K083_ARATH AT5g48220/MIF21_11 (Aldolase-type TIM barrel family protein) (Indole-3-glycerol phosphate synthase),Aldolase-type TIM barrel family protein ARA:AT5G48220-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 41968,35214,40416 AT5g48220/MIF21_11 (Aldolase-type TIM barrel family protein) (Indole-3-glycerol phosphate synthase),Aldolase-type TIM barrel family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; indole-3-glycerol-phosphate synthase activity [GO:0004425]; tryptophan metabolic process [GO:0006568],indole-3-glycerol-phosphate synthase activity [GO:0004425]; tryptophan metabolic process [GO:0006568] locus:2164768; AT5G48220 indole-3-glycerol phosphate synthase Os04g0467700 protein (Fragment) Q0JCI6 Q0JCI6_ORYSJ Os04g0467700 Os04g0467700 OSNPB_040467700 ENOG411DTHJ ZAT1 Q39092 ZAT1_ARATH Zinc finger protein ZAT1 FUNCTION: Probable transcription factor that may be involved in stress responses. {ECO:0000250}. 30182 Zinc finger protein ZAT1 nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2205649; AT1G02030 - C2H2 zinc finger protein expressed Os02g0659500 protein (Zinc finger protein-like) Q6H6A6 Q6H6A6_ORYSJ Os02g0659500 Os02g0659500 OsJ_07814 OSNPB_020659500 P0708H12.21 ENOG411DTHK SRT1 Q9FE17 SIR1_ARATH NAD-dependent protein deacetylase SRT1 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 1) (SIR2-like protein 1) Resistant to disease-Y. Li-2010 FUNCTION: NAD-dependent protein deacetylase. Has deacetylase activity towards H3K9Ac. May have a function in the safeguard against genome instabiliy and DNA damage to ensure plant cell growth (By similarity). {ECO:0000250}. 3.5.1.- 52642 NAD-dependent protein deacetylase SRT1 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 1) (SIR2-like protein 1) nucleus [GO:0005634]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; NAD+ binding [GO:0070403] locus:2162112; AT5G55760 deacetylase OSJNBb0067G11.13 protein (Os04g0271000 protein),Os04g0271000 protein (Fragment) Q7XWV4,A0A0P0W7Z5 Q7XWV4_ORYSJ,A0A0P0W7Z5_ORYSJ Os04g0271000 OSJNBb0067G11.13 OSNPB_040271000,Os04g0271000 OSNPB_040271000 ENOG411DZNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Omega-3 fatty acid desaturase Omega-3 fatty acid desaturase, chloroplast, putative, expressed (Os12g0104400 protein) (cDNA clone:J023083P12, full insert sequence),Os11g0104400 protein Q2QYW4,A0A0P0XY37 Q2QYW4_ORYSJ,A0A0P0XY37_ORYSJ Os12g0104400 LOC_Os12g01370 Os12g0104400 OsJ_34906 OSNPB_120104400,Os11g0104400 OSNPB_110104400 ENOG411DZNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Root cap and Late embryogenesis related family protein precursor Os01g0968300 protein (Putative root cap protein 1),Os01g0968200 protein,Os01g0968100 protein Q8SA01,A0A0P0VDA1,A0A0P0VDB3 Q8SA01_ORYSJ,A0A0P0VDA1_ORYSJ,A0A0P0VDB3_ORYSJ Os01g0968300 OJ1656_A11.10 OsJ_04904 OSNPB_010968300,Os01g0968200 OSNPB_010968200,Os01g0968100 OSNPB_010968100 ENOG411DZNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene insensitive 3 Os02g0574800 protein (Fragment) A0A0P0VKR0 A0A0P0VKR0_ORYSJ Os02g0574800 OSNPB_020574800 ENOG411DZNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Expressed protein (Os03g0829600 protein) (cDNA clone:002-157-E07, full insert sequence) (cDNA clone:J023084A07, full insert sequence) Q10B56 Q10B56_ORYSJ LOC_Os03g61410 Os03g0829600 OSNPB_030829600 ENOG411DZNK APC2 Q8H1U5 APC2_ARATH Anaphase-promoting complex subunit 2 (Cyclosome subunit 2) DISRUPTION PHENOTYPE: Gametophytic lethal phenotype. {ECO:0000269|PubMed:14508008}. Female gametophyte defective; Rare embryo defective (inferred)-P. Genschik-2003 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. {ECO:0000269|PubMed:14508008}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-174184; 97791 Anaphase-promoting complex subunit 2 (Cyclosome subunit 2) anaphase-promoting complex [GO:0005680]; nucleus [GO:0005634]; spindle [GO:0005819]; ubiquitin protein ligase binding [GO:0031625]; cell cycle [GO:0007049]; cell division [GO:0051301]; megagametogenesis [GO:0009561]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] TISSUE SPECIFICITY: Highly expressed in immature flowers. Expressed in stems, leaves and flowers. {ECO:0000269|PubMed:14508008}. locus:2049173; AT2G04660 anaphase-promoting complex subunit Os04g0484800 protein (cDNA clone:J013169P12, full insert sequence) Q0JC96 Q0JC96_ORYSJ Os04g0484800 Os04g0484800 OSNPB_040484800 ENOG411DZNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydroxycinnamoyl-Coenzyme A shikimate quinate hydroxycinnamoyltransferase-like Os08g0543400 protein (Putative hydroxyanthranilate hydroxycinnamoyltransferase 2) (cDNA clone:J013116A07, full insert sequence) (cDNA clone:J023080G08, full insert sequence),Os11g0182200 protein (Transferase family) (Transferase family protein, expressed) (cDNA clone:006-302-H06, full insert sequence),Os11g0182200 protein,Os08g0205000 protein,Os08g0543400 protein (Fragment) Q6ZBI7,Q53MM5,A3C994,A0A0P0XCT7,A0A0P0XJ01 Q6ZBI7_ORYSJ,Q53MM5_ORYSJ,A3C994_ORYSJ,A0A0P0XCT7_ORYSJ,A0A0P0XJ01_ORYSJ Os08g0543400 OJ1521_G02.31 OsJ_28146 OSNPB_080543400 P0623F08.6,Os11g0182200 LOC_Os11g07960 Os11g0182200 OSNPB_110182200,Os11g0182200 OsJ_33198 OSNPB_110182200,Os08g0205000 OSNPB_080205000,Os08g0543400 OSNPB_080543400 ENOG411DZN5 ATL16,ATL1 Q9LSW9,P93823 ATL16_ARATH,ATL1_ARATH RING-H2 finger protein ATL16 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL16),RING-H2 finger protein ATL1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL1) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 42316,42616 RING-H2 finger protein ATL16 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL16),RING-H2 finger protein ATL1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL1) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2176436;,locus:2018334; AT5G43420,AT1G04360 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411DZN6 CRR21 Q9FM64 PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 21) Defective in NDH activity as evidenced by a suppression in the transient increase in fluorescence level after actinic light illumination that occurs in wild-type plants.,RNA editing of the ndhD-2 site is impaired. The codon for Ser-128 is not converted into one for Leu. Complete loss of post-illumination chlorophyll fluorescence-T. Shikanai-2007 FUNCTION: Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor involved in the edition of the site 2 of ndhD (ndhD-2), which encodes a subunit of the NDH complex. {ECO:0000269|PubMed:17483454}. 92137 Pentatricopeptide repeat-containing protein At5g55740, chloroplastic (Protein CHLORORESPIRATORY REDUCTION 21) chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mRNA modification [GO:0016556] locus:2162207; AT5G55740 Pentatricopeptide repeat-containing protein Os01g0607800 protein (Fragment) Q0JLD1,A0A0N7KDA7 Q0JLD1_ORYSJ,A0A0N7KDA7_ORYSJ Os01g0607800 Os01g0607800 OSNPB_010607800,Os01g0607800 OSNPB_010607800 ENOG411DZN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os03g0160200 protein) (cDNA clone:001-043-D09, full insert sequence) (cDNA clone:J013000F21, full insert sequence) (cDNA clone:J023076I11, full insert sequence) (cDNA clone:J023115H15, full insert sequence) Q10RG3 Q10RG3_ORYSJ LOC_Os03g06420 Os03g0160200 OsJ_09493 OSNPB_030160200 ENOG411EDTD Q8GYU6,A0A1P8AYB6 Q8GYU6_ARATH,A0A1P8AYB6_ARATH Calcium-binding EF-hand family protein (Uncharacterized protein At2g34020),Calcium-binding EF-hand family protein 68262,72151 Calcium-binding EF-hand family protein (Uncharacterized protein At2g34020),Calcium-binding EF-hand family protein integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509] locus:2055461; AT2G34020 EFh NA NA NA NA NA NA NA ENOG411EDTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0150200 protein,Os08g0149100 protein (Fragment) B9FZ28,A0A0P0XBR7 B9FZ28_ORYSJ,A0A0P0XBR7_ORYSJ Os08g0150200 OsJ_26042 OSNPB_080150200,Os08g0149100 OSNPB_080149100 ENOG411DVQ0 Q9LI73,F4JA44 Q9LI73_ARATH,F4JA44_ARATH At3g25700 (Chloroplast nucleoid DNA binding protein-like nucellin-like protein) (Eukaryotic aspartyl protease family protein),Eukaryotic aspartyl protease family protein 49374,38316 At3g25700 (Chloroplast nucleoid DNA binding protein-like nucellin-like protein) (Eukaryotic aspartyl protease family protein),Eukaryotic aspartyl protease family protein aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190] locus:2102335; AT3G25700 Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411E0HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Male sterility protein Os01g0828100 protein (Fragment) A0A0P0V9Y3 A0A0P0V9Y3_ORYSJ Os01g0828100 OSNPB_010828100 ENOG411E0HS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulase (glycosyl hydrolase family 5) Os02g0596200 protein (Putative cellulase),Os04g0276300 protein (Fragment) Q6ZI46,A0A0P0W8I4 Q6ZI46_ORYSJ,A0A0P0W8I4_ORYSJ Os02g0596200 Os02g0596200 OJ1126_D09.36 OJ1568_B05.3 OSNPB_020596200,Os04g0276300 OSNPB_040276300 ENOG411E0HP SKIP28 Q9ZU90 SKI28_ARATH F-box protein SKIP28 (Protein MATERNAL EFFECT EMBRYO ARREST 11) (SKP1-interacting partner 28) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Required during the endosperm development in embryos. {ECO:0000250, ECO:0000269|PubMed:15634699}. PATHWAY: Protein modification; protein ubiquitination. 33005 F-box protein SKIP28 (Protein MATERNAL EFFECT EMBRYO ARREST 11) (SKP1-interacting partner 28) embryo development ending in seed dormancy [GO:0009793]; protein ubiquitination [GO:0016567] locus:2065418; AT2G01620 F-Box protein Os08g0428100 protein (Fragment) A0A0P0XFT5 A0A0P0XFT5_ORYSJ Os08g0428100 OSNPB_080428100 ENOG411E0HN Q8W4C3,A0A1I9LMH8 PARNL_ARATH,A0A1I9LMH8_ARATH Poly(A)-specific ribonuclease PARN-like (EC 3.1.13.4) (Polyadenylate-specific ribonuclease-like protein),Polynucleotidyl transferase, ribonuclease H-like superfamily protein FUNCTION: 3'-exoribonuclease that has a preference for poly(A) tails of mRNAs, thereby efficiently degrading poly(A) tails. Exonucleolytic degradation of the poly(A) tail is often the first step in the decay of eukaryotic mRNAs (By similarity). {ECO:0000250}. R-ATH-450604; 3.1.13.4 68807,66961 Poly(A)-specific ribonuclease PARN-like (EC 3.1.13.4) (Polyadenylate-specific ribonuclease-like protein),Polynucleotidyl transferase, ribonuclease H-like superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; cation binding [GO:0043169]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; mRNA processing [GO:0006397],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2094533; AT3G25430 Poly(A)-specific ribonuclease PARN-like Os08g0440200 protein Q0J5E9 Q0J5E9_ORYSJ Os08g0440200 Os08g0440200 OSNPB_080440200 ENOG411E0HM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc Kinesin-like protein KIN-14M,Kinesin-like protein KIN-14D B9FTR1,Q0E2L3 KN14M_ORYSJ,KN14D_ORYSJ KIN14M Os06g0554700 LOC_Os06g36080 OsJ_21674 P0458E11.2,KIN14D Os02g0229500/Os02g0229600 LOC_Os02g13570/LOC_Os02g13580 OsJ_05972 OSJNBb0035N08.18 ENOG411E0HK GAUT9 Q9FWA4 GAUT9_ARATH Probable galacturonosyltransferase 9 (EC 2.4.1.-) Abnormal xylan and pectin levels in cell walls-D. Mohnen-2009 FUNCTION: May be involved in pectin synthesis. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 64160 Probable galacturonosyltransferase 9 (EC 2.4.1.-) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; pectin biosynthetic process [GO:0045489] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:2074572; AT3G02350 Galacturonosyltransferase NA NA NA NA NA NA NA ENOG411E0HI Q8RXT1,A0A1P8BBF6,A0A1P8BBF5 Q8RXT1_ARATH,A0A1P8BBF6_ARATH,A0A1P8BBF5_ARATH Repressor of RNA polymerase III transcription R-ATH-8943724; 25996,26456,28389 Repressor of RNA polymerase III transcription cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA polymerase III core binding [GO:0000994]; negative regulation of transcription from RNA polymerase III promoter [GO:0016480]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; negative regulation of transcription from RNA polymerase III promoter [GO:0016480]; transcription, DNA-templated [GO:0006351] locus:2832922; AT5G13240 Repressor of RNA polymerase III transcription MAF1 Repressor of RNA polymerase III transcription Q7XM18 Q7XM18_ORYSJ Os04g0662900 OSJNBa0084K01.13 OSNPB_040662900 ENOG411E0HG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_18 Os04g0376400 protein A0A0P0W9B7 A0A0P0W9B7_ORYSJ Os04g0376400 OSNPB_040376400 ENOG411E0HC A2RVU1,A0A1P8AQQ0,A0A1P8AQR9,A0A1P8AQR1,A0A1P8AQT3,A0A1P8AQV1,A0A1P8AQT6 A2RVU1_ARATH,A0A1P8AQQ0_ARATH,A0A1P8AQR9_ARATH,A0A1P8AQR1_ARATH,A0A1P8AQT3_ARATH,A0A1P8AQV1_ARATH,A0A1P8AQT6_ARATH At1g31720 (Chitin synthase, putative (DUF1218)),Chitin synthase, putative (DUF1218) 21656,20007,20515,21147,20494,21003,19546 At1g31720 (Chitin synthase, putative (DUF1218)),Chitin synthase, putative (DUF1218) integral component of membrane [GO:0016021]; membrane [GO:0016020],integral component of membrane [GO:0016021] locus:2028596; AT1G31720 Protein of unknown function (DUF1218) Os02g0703300 protein (cDNA clone:001-002-G11, full insert sequence) (cDNA clone:001-205-H02, full insert sequence) (cDNA clone:J023113K24, full insert sequence) Q6YVJ6 Q6YVJ6_ORYSJ Os02g0703300 Os02g0703300 OJ1218_D07.23 OsJ_08068 OSNPB_020703300 P0724B10.12 ENOG411E0H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411E0H8 MRH10.5 Q9M8Z1,Q940K1,Q9FND1,Q501D1,A0A1I9LTD2 Q9M8Z1_ARATH,Q940K1_ARATH,Q9FND1_ARATH,Q501D1_ARATH,A0A1I9LTD2_ARATH AT3g04350/T6K12_3 (T6K12.3 protein) (Vacuolar sorting-associated protein (DUF946)),At5g18490 (Vacuolar sorting-associated protein (DUF946)),Uncharacterized protein At5g43950 (Uncharacterized protein At5g43950; MRH10.5) (Vacuolar protein sorting-associated protein (DUF946)),At1g04090 (Vacuolar sorting-associated protein (DUF946)),Vacuolar sorting-associated protein (DUF946) 63009,61646,64286,64197,60580 AT3g04350/T6K12_3 (T6K12.3 protein) (Vacuolar sorting-associated protein (DUF946)),At5g18490 (Vacuolar sorting-associated protein (DUF946)),Uncharacterized protein At5g43950 (Uncharacterized protein At5g43950; MRH10.5) (Vacuolar protein sorting-associated protein (DUF946)),At1g04090 (Vacuolar sorting-associated protein (DUF946)),Vacuolar sorting-associated protein (DUF946) locus:2103020;,locus:2146188;,locus:2172462;,locus:2020210; AT3G04350,AT5G18490,AT5G43950,AT1G04090 Plant protein of unknown function (DUF946) Os03g0142900 protein (Pre-mRNA processing protein PRP39, putative, expressed) (cDNA clone:J013097D18, full insert sequence) (cDNA clone:J013098E18, full insert sequence) Q10RX5 Q10RX5_ORYSJ Os03g0142900 LOC_Os03g04930 Os03g0142900 OsJ_09364 OSNPB_030142900 ENOG411E0H7 CESA1,CESA10 O48946,Q9SKJ5 CESA1_ARATH,CESAA_ARATH Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1),Probable cellulose synthase A catalytic subunit 10 [UDP-forming] (AtCesA10) (AtCesA13) (EC 2.4.1.12) Gametophytic lethal. 50% pollen grains from the heterozygous plants are significantly deformed without pollen tube formation.,Showed comparable decreases in the length of dark-grown hypocotyls accompanied by increases in width in both epidermal and cortical cells. FTIR microspectroscopy also indicated a cellulose deficiency in epidermal or cortical cells.,The greenhouse-grown mutant was slightly dwarfed.,Both mutation are additive as shown by the further shortened hypocotyl length of the double mutant.,Partial reversion of the hypocotyl-elongation defect of rsw1-10. Null: Complete male gametophyte defective; Strong knockdown: Embryo defective; Weak knockdown: Thick roots and seedlings-C. Somerwille-2007 FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation. Required during embryogenesis for cell elongation, orientation of cell expansion and complex cell wall formations, such as interdigitated pattern of epidermal pavement cells, stomatal guard cells and trichomes. Plays a role in lateral roots formation, but seems not necessary for the development of tip-growing cells such as root hairs. The presence of each protein CESA1 and CESA6 is critical for cell expansion after germination. {ECO:0000269|PubMed:10987560, ECO:0000269|PubMed:11148287, ECO:0000269|PubMed:11732051, ECO:0000269|PubMed:11732056, ECO:0000269|PubMed:11901167, ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12481071, ECO:0000269|PubMed:17878302, ECO:0000269|PubMed:17878303, ECO:0000269|PubMed:9445479}.,FUNCTION: Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250}. PATHWAY: Glycan metabolism; plant cellulose biosynthesis. MetaCyc:MONOMER-2361;,ARA:AT2G25540-MONOMER; 2.4.1.12 122237,120617 Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1),Probable cellulose synthase A catalytic subunit 10 [UDP-forming] (AtCesA10) (AtCesA13) (EC 2.4.1.12) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; hyperosmotic salinity response [GO:0042538]; plant-type primary cell wall biogenesis [GO:0009833],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type primary cell wall biogenesis [GO:0009833] DEVELOPMENTAL STAGE: Expressed throughout the embryo during all steps of embryogenesis, and decrease toward the bent-cotyledon stage. Higher levels in tissues undergoing primary cell wall formation, and drop of expression when secondary wall synthesis takes place. High levels in developing seedlings and elongating stems, with a decrease at later growth stages. {ECO:0000269|PubMed:11148287, ECO:0000269|PubMed:12481071}.,DEVELOPMENTAL STAGE: Not found in embryos. {ECO:0000269|PubMed:12068120}. TISSUE SPECIFICITY: Expressed in germinating seeds, seedlings, roots, stems, shoots leaves and flowers, but not in mature flowers. {ECO:0000269|PubMed:11148287, ECO:0000269|PubMed:11517344, ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12481071}.,TISSUE SPECIFICITY: Expressed in young plants, stems, flowers and inflorescences. {ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12481071}. locus:2127776;,locus:2040080; AT4G32410,AT2G25540 Cellulose synthase A catalytic subunit 1 UDP-forming Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (OsCesA1),Os05g0176100 protein (Fragment),Cellulose synthase (EC 2.4.1.12) (Fragment) Q6AT26,A0A0P0WIK3,A0A0P0WII5,A0A0P0WIK8 CESA1_ORYSJ,A0A0P0WIK3_ORYSJ,A0A0P0WII5_ORYSJ,A0A0P0WIK8_ORYSJ CESA1 Os05g0176100 LOC_Os05g08370 OsJ_016545 OsJ_17310 OSJNBa0029B02.3 P0617A08.14,Os05g0176100 OSNPB_050176100 FUNCTION: Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250}. ENOG411E0H6 RPA2A,RPA2B,RPA32B Q9ZQ19,Q8LFJ8,F4IYI1 RFA2A_ARATH,RFA2B_ARATH,F4IYI1_ARATH Replication protein A 32 kDa subunit A (AtRPA32A) (RP-A p32 A) (DNA replication protein A2 subunit A) (Protein SUPPRESSOR OF ROS1) (Replication factor A protein 2 A) (AtRPA2 A) (RF-A protein 2 A) (Replicon protein A2 A),Replication protein A 32 kDa subunit B (AtRPA32B) (RP-A p32 B) (DNA replication protein A2 subunit B) (Replication factor A protein 2 B) (AtRPA2 B) (RF-A protein 2 B) (Replicon protein A2 B),Replication protein A, subunit RPA32 DISRUPTION PHENOTYPE: Affected cell division in meristems but normal final cell sizes. Earlier flowering and smaller plant size. Enhanced sensitivity to methyl methanesulfonate (MMS), a genotoxic agent that damages DNA bases. Enhanced expression of some transposons. When associated with ROS1 disruption, restored silencing of some genes associated with increased histone H3 acetylation and histone H3 'Lys-4' methylation (H3K4me2), but decreased histone H3 'Lys-9' methylation (H3K9me2) in their promoter. {ECO:0000269|PubMed:16271867, ECO:0000269|PubMed:16271868, ECO:0000269|PubMed:16326925}. Increased sensitivity to DNA damagedecreased gene silencing as measured by expression of reporter genes small plants decreased trichome number early flowering in long daysdecreased cell division short roots. Dwarf; Decreased trichome density; Early flowering-Z. Gong-2005 FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Required fo cell division in meristems. Involved in the maintenance of transcriptional epigenetic gene silencing (TGS) at specific loci (including some transposons) by regulating histone H3 acetylation, 'Lys-4' and 'Lys-9' methylation. {ECO:0000269|PubMed:16271867, ECO:0000269|PubMed:16271868, ECO:0000269|PubMed:16326925}.,FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Required fo cell division in meristems. Involved in the maintenance of transcriptional epigenetic gene silencing (TGS) at specific loci (including some transposons) by regulating histone H3 acetylation, 'Lys-4' and 'Lys-9' methylation (By similarity). {ECO:0000250}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174437;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696395;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-68962;R-ATH-69166; 30980,30957,25527 Replication protein A 32 kDa subunit A (AtRPA32A) (RP-A p32 A) (DNA replication protein A2 subunit A) (Protein SUPPRESSOR OF ROS1) (Replication factor A protein 2 A) (AtRPA2 A) (RF-A protein 2 A) (Replicon protein A2 A),Replication protein A 32 kDa subunit B (AtRPA32B) (RP-A p32 B) (DNA replication protein A2 subunit B) (Replication factor A protein 2 B) (AtRPA2 B) (RF-A protein 2 B) (Replicon protein A2 B),Replication protein A, subunit RPA32 nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; gene silencing [GO:0016458],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724] DEVELOPMENTAL STAGE: Accumulates essentially in meristematic active tissues. In seedlings, expressed in primary roots, shoot apical meristems (SAMs), cotyledons, and vascular tissues. Later observed in lateral root primordia, root tips, SAMs and young leaves. {ECO:0000269|PubMed:16326925}. TISSUE SPECIFICITY: Strongly expressed in shoot and root meristems. Present in seedlings, roots, leaves, siliques and flowers. {ECO:0000269|PubMed:16271867, ECO:0000269|PubMed:16326925}. locus:2061072;,locus:2075417; AT2G24490,AT3G02920 Replication protein A Replication protein A 32 kDa subunit B (OsRPA32B) (OsRPA32-2) (Replication factor A protein 2B) (Replication protein A 2B),Replication protein A 32 kDa subunit A (OsRPA32A) (OsRPA32-1) (Replication factor A protein 2A) (Replication protein A 2A) Q6H7J5,Q6K9U2 RFA2B_ORYSJ,RFA2A_ORYSJ RPA2B RPA32B Os02g0633400 LOC_Os02g42230 OJ1643_A10.19,RPA2A RPA32A Os02g0829100 LOC_Os02g58220 OJ1124_D06.4 OsJ_08977 FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions (By similarity). {ECO:0000250}. ENOG411E0H5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0140900 protein,Os12g0137400 protein (Fragment) C7J8R9,A0A0P0Y6N1 C7J8R9_ORYSJ,A0A0P0Y6N1_ORYSJ Os11g0140900 OSNPB_110140900,Os12g0137400 OSNPB_120137400 ENOG411E0H4 F4I737,F4I735,F4I736 F4I737_ARATH,F4I735_ARATH,F4I736_ARATH ARM repeat superfamily protein R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; 160864,159169,158373 ARM repeat superfamily protein chromatin [GO:0000785]; nucleus [GO:0005634]; DNA repair [GO:0006281]; mitotic sister chromatid cohesion [GO:0007064] locus:2204665; AT1G77600 Sister chromatid cohesion protein Os01g0869300 protein (Fragment) A0A0P0VAX1 A0A0P0VAX1_ORYSJ Os01g0869300 OSNPB_010869300 ENOG411E1EB WNK1 Q9CAV6,B3H6U2,F4J622 WNK1_ARATH,B3H6U2_ARATH,F4J622_ARATH Serine/threonine-protein kinase WNK1 (AtWNK1) (EC 2.7.11.1) (Protein kinase with no lysine 1),With no lysine (K) kinase 1 DISRUPTION PHENOTYPE: Plants display delayed flowering and altered expression of genes involved in the photoperiod flowering pathway, such as ELF4, TOC1, CO and FT. {ECO:0000269|PubMed:18761494}. FUNCTION: Regulates flowering time by modulating the photoperiod pathway. Phosphorylates APRR3. {ECO:0000269|PubMed:12091722, ECO:0000269|PubMed:12506983, ECO:0000269|PubMed:18761494}. 2.7.11.1 80208,65185,77789 Serine/threonine-protein kinase WNK1 (AtWNK1) (EC 2.7.11.1) (Protein kinase with no lysine 1),With no lysine (K) kinase 1 cytosol [GO:0005829]; membrane [GO:0016020]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; circadian rhythm [GO:0007623]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2114845; AT3G04910 serine threonine-protein kinase WNK1-like Probable serine/threonine-protein kinase WNK1 (OsWNK1) (EC 2.7.11.1) (Mitogen-activated protein kinase kinase 1) (Protein kinase with no lysine 1) Q0D598 WNK1_ORYSJ WNK1 MEK1 Os07g0572800 LOC_Os07g38530 OJ1121_A05.35-1 OJ1121_A05.35-2 OJ1699_E05.11-1 OJ1699_E05.11-2 OsJ_023858 ENOG411DVQZ ALDH7B4 Q9SYG7 AL7B4_ARATH Aldehyde dehydrogenase family 7 member B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor-responsive ALDH) ARA:AT1G54100-MONOMER; R-ATH-6798163;R-ATH-71064; 1.2.1.3 54208 Aldehyde dehydrogenase family 7 member B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor-responsive ALDH) cytosol [GO:0005829]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; cellular aldehyde metabolic process [GO:0006081]; response to abscisic acid [GO:0009737]; response to desiccation [GO:0009269]; response to salt stress [GO:0009651] locus:2014380; AT1G54100 Aldehyde dehydrogenase family 7 member Aldehyde dehydrogenase (Os09g0440300 protein) (cDNA clone:001-032-H04, full insert sequence) (cDNA clone:J013034F13, full insert sequence),Aldehyde dehydrogenase-like protein (Os09g0440300 protein) Q69P84,Q69P83 Q69P84_ORYSJ,Q69P83_ORYSJ OJ1344_B01.27-1 Os09g0440300 OSNPB_090440300,OJ1344_B01.27-2 Os09g0440300 OSNPB_090440300 ENOG411DVQM XDH1,XDH2 Q8GUQ8,F4JLI5,Q9M847,Q9SZU9,A0A1P8B6H2,A0A1P8B6H0 XDH1_ARATH,XDH2_ARATH,Q9M847_ARATH,Q9SZU9_ARATH,A0A1P8B6H2_ARATH,A0A1P8B6H0_ARATH Xanthine dehydrogenase 1 (AtXDH1) (EC 1.17.1.4),Xanthine dehydrogenase 2 (AtXDH2) (EC 1.17.1.4),Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (T27C4.3 protein),Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (Uncharacterized protein AT4g37500) (Uncharacterized protein F6G17.150),Xanthine dehydrogenase 2 Mutant lacked xanthine dehydrogenase and ROS-generating activities but contained normal levels of aldehyde oxidase activity. AtXDH1 transcript level in leaves of the Atxdh1 insertion line was threefold lower than in wild type. Complete loss of XDH and ROS-generation-M. Sagi-2005 FUNCTION: Key enzyme involved in purine catabolism. Catalyzes the oxidation of hypoxanthine to xanthine and the oxidation of xanthine to urate. Regulates the level of ureides and plays an important role during plant growth and development, senescence and response to stresses. Possesses NADH oxidase activity and may contribute to the generation of superoxide anions in planta. {ECO:0000269|PubMed:14726515, ECO:0000269|PubMed:15941399, ECO:0000269|PubMed:17872919, ECO:0000269|PubMed:18266920, ECO:0000269|PubMed:19915948, ECO:0000269|PubMed:20153325}.,FUNCTION: Key enzyme involved in purine catabolism. Catalyzes the oxidation of hypoxanthine to xanthine and the oxidation of xanthine to urate. Regulates the level of ureides and plays a role during plant growth and development and senescence. {ECO:0000269|PubMed:17872919}. MISCELLANEOUS: Plants silencing simultaneously XDH1 and XDH2 show reduced growth, impaired silique development, increased seed sterility, precocious senescence of mature leaves and overaccumulation of xanthine. {ECO:0000305|PubMed:17872919}. ARA:AT4G34890-MONOMER;MetaCyc:AT4G34890-MONOMER;,ARA:GQT-868-MONOMER; 1.17.1.4; 1.17.1.4 149196,148762,8576,13393,128105,139654 Xanthine dehydrogenase 1 (AtXDH1) (EC 1.17.1.4),Xanthine dehydrogenase 2 (AtXDH2) (EC 1.17.1.4),Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (T27C4.3 protein),Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (Uncharacterized protein AT4g37500) (Uncharacterized protein F6G17.150),Xanthine dehydrogenase 2 cytosol [GO:0005829]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; oxidoreductase activity, acting on the aldehyde or oxo group of donors [GO:0016903]; xanthine dehydrogenase activity [GO:0004854]; purine nucleobase catabolic process [GO:0006145]; response to reactive oxygen species [GO:0000302]; response to water deprivation [GO:0009414]; superoxide anion generation [GO:0042554]; xanthine catabolic process [GO:0009115]; xanthine metabolic process [GO:0046110],cytosol [GO:0005829]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; oxidoreductase activity, acting on the aldehyde or oxo group of donors [GO:0016903]; xanthine dehydrogenase activity [GO:0004854]; xanthine catabolic process [GO:0009115]; xanthine metabolic process [GO:0046110],oxidoreductase activity [GO:0016491],cytosol [GO:0005829]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on the aldehyde or oxo group of donors [GO:0016903]; xanthine dehydrogenase activity [GO:0004854]; xanthine catabolic process [GO:0009115],2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],2 iron, 2 sulfur cluster binding [GO:0051537]; flavin adenine dinucleotide binding [GO:0050660]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14726515}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. locus:2116900;,locus:2116910;,locus:2100905;,locus:2126387; AT4G34890,AT4G34900,AT3G04390,AT4G37500 xanthine dehydrogenase Xanthine dehydrogenase (EC 1.17.1.4),Os03g0429800 protein (Fragment) Q6AUV1,A0A0P0VYW4,A0A0P0VZ28 XDH_ORYSJ,A0A0P0VYW4_ORYSJ,A0A0P0VZ28_ORYSJ XDH Os03g0429800 LOC_Os03g31550 OsJ_11360 OSJNBa0091B22.11,Os03g0429800 OSNPB_030429800 FUNCTION: Key enzyme involved in purine catabolism. Catalyzes the oxidation of hypoxanthine to xanthine and the oxidation of xanthine to urate. {ECO:0000250|UniProtKB:Q8GUQ8}. ENOG411DVQN NAC073 O49459 NAC73_ARATH NAC domain-containing protein 73 (ANAC073) (Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2) FUNCTION: Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. 33697 NAC domain-containing protein 73 (ANAC073) (Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. locus:2121387; AT4G28500 NAC domain-containing protein 8-like NA NA NA NA NA NA NA ENOG411EDM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EIXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EIXE MFC16.10 Q9FI25,Q9FI21,A0A1P8BFF2 BBE27_ARATH,BBE28_ARATH,A0A1P8BFF2_ARATH Berberine bridge enzyme-like 27 (AtBBE-like 27) (EC 1.1.1.-),Berberine bridge enzyme-like 28 (AtBBE-like 28) (EC 1.1.1.-),FAD-binding Berberine family protein DISRUPTION PHENOTYPE: No obvious developmental defects but reduced biomass and reduced leaves number. Increased sensitivity to salt stress. {ECO:0000269|PubMed:27276217}. FUNCTION: Involved in adaptation to salt stress. {ECO:0000269|PubMed:27276217}. ARA:AT5G44410-MONOMER;,ARA:AT5G44440-MONOMER; 1.1.1.- 61274,60137,68388 Berberine bridge enzyme-like 27 (AtBBE-like 27) (EC 1.1.1.-),Berberine bridge enzyme-like 28 (AtBBE-like 28) (EC 1.1.1.-),FAD-binding Berberine family protein extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; response to salt stress [GO:0009651],flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] TISSUE SPECIFICITY: Accumulates in cell walls of etiolated hypocotyls. {ECO:0000269|PubMed:18796151}. locus:2163411;,locus:2163441; AT5G44410,AT5G44440 reticuline oxidase-like protein-like Os06g0548200 protein (Putative CPRD2),Os10g0361200 protein,Os05g0353100 protein,Os05g0558200 protein (Os05g0558600 protein),Os09g0328900 protein,Os01g0383001 protein,Os08g0525100 protein (Fragment),Os07g0662300 protein Q5Z7I5,Q9AUP1,Q5W768,A0A0N7KL82,A0A0N7KQK9,A0A0P0V2Q7,A0A0P0XIF7,A0A0N7KP04 Q5Z7I5_ORYSJ,Q9AUP1_ORYSJ,Q5W768_ORYSJ,A0A0N7KL82_ORYSJ,A0A0N7KQK9_ORYSJ,A0A0P0V2Q7_ORYSJ,A0A0P0XIF7_ORYSJ,A0A0N7KP04_ORYSJ Os06g0548200 Os06g0548200 OSJNBa0016D02.39 OSNPB_060548200,OSJNBa0058E19.10 Os10g0361200 OsJ_31226 OSNPB_100361200,Os05g0353100 OJ1320_D10.6 OSNPB_050353100,Os05g0558200 Os05g0558600 OSNPB_050558200 OSNPB_050558600,Os09g0328900 OSNPB_090328900,Os01g0383001 OSNPB_010383001,Os08g0525100 OSNPB_080525100,Os07g0662300 OSNPB_070662300 ENOG411EIXC Q9SVG5 BBE18_ARATH Berberine bridge enzyme-like 18 (AtBBE-like 18) (EC 1.1.1.-) ARA:AT4G20820-MONOMER; 1.1.1.- 60392 Berberine bridge enzyme-like 18 (AtBBE-like 18) (EC 1.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2121534; AT4G20820 Berberine and berberine like Os06g0548100 protein (Putative CPRD2),Os06g0549633 protein (Putative CPRD2),Os06g0549900 protein (cDNA clone:002-145-B05, full insert sequence) Q5Z7I6,Q5Z956,Q0DBM6 Q5Z7I6_ORYSJ,Q5Z956_ORYSJ,Q0DBM6_ORYSJ Os06g0548100 OSJNBa0016D02.36 OSNPB_060548100,Os06g0549633 OsJ_21639 OSNPB_060549633 P0659D09.12,Os06g0549900 Os06g0549900 OSNPB_060549900 ENOG411EIXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0535600 protein) (cDNA clone:002-155-A11, full insert sequence),Os01g0299900 protein Q336X2,A0A0P0V204 Q336X2_ORYSJ,A0A0P0V204_ORYSJ Os10g0535600 LOC_Os10g39090 Os10g0535600 OSNPB_100535600,Os01g0299900 OSNPB_010299900 ENOG411EIX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0277900 protein,Os12g0277725 protein Q2QU02,B9GCM8 Q2QU02_ORYSJ,B9GCM8_ORYSJ Os12g0277900 LOC_Os12g17950 OSNPB_120277900,Os12g0277725 OsJ_35756 OSNPB_120277725 ENOG411EIX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0815300 protein (Fragment) A0A0P0VR55 A0A0P0VR55_ORYSJ Os02g0815300 OSNPB_020815300 ENOG411EBBK F4ITY2,F4ITY1 F4ITY2_ARATH,F4ITY1_ARATH DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) 23582,34634 DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2040389; AT2G38820 Protein of unknown function (DUF506) NA NA NA NA NA NA NA ENOG411EBBH MUG13.5 Q9FF65 Q9FF65_ARATH At5g05090 (Homeodomain-like superfamily protein) (Similarity to unknown protein) (Uncharacterized protein At5g05090) 29441 At5g05090 (Homeodomain-like superfamily protein) (Similarity to unknown protein) (Uncharacterized protein At5g05090) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2175364; AT5G05090 MYB family transcription factor NA NA NA NA NA NA NA ENOG411EBBN F5O8.22 Q9ZUC8,F4I699 Q9ZUC8_ARATH,F4I699_ARATH F5O8.22 protein (OBP32pep protein, putative (DUF220)),OBP32pep protein, putative (DUF220) 31144,25822 F5O8.22 protein (OBP32pep protein, putative (DUF220)),OBP32pep protein, putative (DUF220) locus:2034873; AT1G23670 Domain of unknown function DUF220 NA NA NA NA NA NA NA ENOG411EBBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EBB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0724300 protein A0A0P0W3C8 A0A0P0W3C8_ORYSJ Os03g0724300 OSNPB_030724300 ENOG411EBB2 Q6NL02 FK131_ARATH F-box/kelch-repeat protein At5g39560 46446 F-box/kelch-repeat protein At5g39560 chloroplast [GO:0009507] locus:2164845; AT5G39560 Kelch motif NA NA NA NA NA NA NA ENOG411EBB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411E0YT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Diacylglycerol kinase catalytic domain Os08g0152700 protein (Sphingosine kinase-like protein) (cDNA clone:J013001F10, full insert sequence) Q84S01 Q84S01_ORYSJ OJ1349_D05.118 Os08g0152700 OsJ_26062 OSNPB_080152700 ENOG411E7P0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0623100 protein (Fragment) Q0DQ87 Q0DQ87_ORYSJ Os03g0623100 OSNPB_030623100 ENOG411E7P1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0539700 protein (cDNA, clone: J090082D24, full insert sequence) Q651E6 Q651E6_ORYSJ Os09g0539700 B1274F11.11 OSNPB_090539700 ENOG411E7P3 PDF2.5 Q9FFP8 DEF06_ARATH Defensin-like protein 6 (Low-molecular-weight cysteine-rich protein 74) (Protein LCR74) (Plant defensin 2.5) FUNCTION: Confers broad-spectrum resistance to pathogens. 8388 Defensin-like protein 6 (Low-molecular-weight cysteine-rich protein 74) (Protein LCR74) (Plant defensin 2.5) extracellular region [GO:0005576]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:2160569; AT5G63660 Gamma-thionin family NA NA NA NA NA NA NA ENOG411E7P5 MXC20.12 Q5HZ10,Q9FLX2 Q5HZ10_ARATH,Q9FLX2_ARATH AT hook motif-containing protein (At5g52890),AT hook motif-containing protein 38159,41013 AT hook motif-containing protein (At5g52890),AT hook motif-containing protein locus:2176887; AT5G52890 AT hook motif-containing protein NA NA NA NA NA NA NA ENOG411E7P6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os08g0118800 protein Q6ZJ49 Q6ZJ49_ORYSJ Os08g0118800 OJ1005_B05.18 OsJ_25842 OSNPB_080118800 ENOG411E7PI Q9SKM9 Q9SKM9_ARATH Expressed protein (GPI-anchored protein) (Transmembrane protein) (Uncharacterized protein At2g28410) 12161 Expressed protein (GPI-anchored protein) (Transmembrane protein) (Uncharacterized protein At2g28410) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2057532; AT2G28410 NA NA NA NA NA NA NA NA ENOG411E7PM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7PN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E7PA Q9CAN7 Q9CAN7_ARATH Ribosome biogenesis NEP1-like protein (Uncharacterized protein At1g63060) (Uncharacterized protein F16M19.2) 15956 Ribosome biogenesis NEP1-like protein (Uncharacterized protein At1g63060) (Uncharacterized protein F16M19.2) integral component of membrane [GO:0016021] locus:2015203; AT1G63060 NA NA NA NA NA NA NA NA ENOG411E7PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Os01g0615050 protein (Fragment),Os01g0615100 protein (Protease inhibitor-like) (Subitilisin-chymotrypsin inhibitor) (cDNA clone:001-103-H12, full insert sequence) C7IX78,Q5ZDX2 C7IX78_ORYSJ,Q5ZDX2_ORYSJ Os01g0615050 Os01g0615050 OSNPB_010615050,Sci2 Os01g0615100 OsJ_02604 OSNPB_010615100 P0410E01.45 ENOG411E7PF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TspO/MBR family NA NA NA NA NA NA NA ENOG411E7PP Q9ZNU3 Q9ZNU3_ARATH Putative extensin (Serine/arginine repetitive matrix protein) 43246 Putative extensin (Serine/arginine repetitive matrix protein) locus:2039987; AT2G46630 NA NA NA NA NA NA NA NA ENOG411E7PR IBH1 Q9SKX1 IBH1_ARATH Transcription factor IBH1 (AtIBH1) (BHLH transcription factor zeta) (bHLH zeta) (Basic helix-loop-helix protein 158) (AtbHLH158) (bHLH 158) (Protein ILI1-BINDING BHLH 1) (bHLH transcription factor bHLH158) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:24505057}. FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that acts as transcriptional repressor that negatively regulates cell and organ elongation in response to gibberellin (GA) and brassinosteroid (BR) signaling. Is able to form heterodimer with BHLH49, thus inhibiting DNA binding of BHLH49, which is a transcriptional activator that regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds and inhibits HBI1, a positive regulator of cell elongation that directly binds to the promoters and activated the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. The ability of IBH1 to inhibit BHLH49 and HBI1 is counteracted by binding to the antagonist bHLH transcription factor PRE1, restoring the transcriptional activity of BHLH49 and HBI1 and resulting in induction of cell elongation. Functions redundantly with IBL1/BHLH159 in a regulation node known as the incoherent feed-forward loop (FFL) (PubMed:24505057). {ECO:0000269|PubMed:20009022, ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:23221598, ECO:0000269|PubMed:24505057}. MISCELLANEOUS: Plants over-expressing IBH1 are dwarf with round-shaped, dark-green leaves, short petioles, siliques and roots, and are insensitive to brassinosteroid (PubMed:20009022, PubMed:23161888, PubMed:23221598). Plants silencing IBH1 exhibit increased length of hypocotyls and leaves (PubMed:23161888). {ECO:0000305|PubMed:20009022, ECO:0000305|PubMed:23161888, ECO:0000305|PubMed:23221598}. 17825 Transcription factor IBH1 (AtIBH1) (BHLH transcription factor zeta) (bHLH zeta) (Basic helix-loop-helix protein 158) (AtbHLH158) (bHLH 158) (Protein ILI1-BINDING BHLH 1) (bHLH transcription factor bHLH158) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of growth [GO:0040008]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in rosette leaves, stems and cauline leaves. {ECO:0000269|PubMed:20009022}. locus:2053718; AT2G43060 transcription factor NA NA NA NA NA NA NA ENOG411E7PS PSK4,PSK2 Q9SZG4,O81003 PSK4_ARATH,PSK2_ARATH Putative phytosulfokines 4 (AtPSK4) [Cleaved into: Phytosulfokine-alpha-like (PSK-alpha-like) (Phytosulfokine-a-like); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)],Phytosulfokines 2 (AtPSK2) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. {ECO:0000250}.,FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. 9701,9627 Putative phytosulfokines 4 (AtPSK4) [Cleaved into: Phytosulfokine-alpha-like (PSK-alpha-like) (Phytosulfokine-a-like); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)],Phytosulfokines 2 (AtPSK2) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] extracellular matrix [GO:0031012]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; cell proliferation [GO:0008283]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed in stems, roots and leaves. {ECO:0000269|PubMed:16829587}. locus:2120091;,locus:2059216; AT4G37720,AT2G22860 Phytosulfokines Os03g0232400 protein (Phytosulfokine protein containing protein, expressed) (Putative Phytosulfokines) Q8S5X1 Q8S5X1_ORYSJ OJ1175C11.17 LOC_Os03g12990 Os03g0232400 OJ1017C11.14 OsJ_10033 OSNPB_030232400 ENOG411EH51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosome inactivating protein NA NA NA NA NA NA NA ENOG411EDJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfate bicarbonate oxalate exchanger and transporter sat-1 NA NA NA NA NA NA NA ENOG411EDJ5 FBW1 Q4PSN6 FBW1_ARATH F-box/WD-40 repeat-containing protein 1 (WD-40-associated F-box protein 1) 47276 F-box/WD-40 repeat-containing protein 1 (WD-40-associated F-box protein 1) ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2089473; AT3G21410 F-box associated NA NA NA NA NA NA NA ENOG411EDJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411EDJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-dependent decarboxylase conserved domain Serine decarboxylase 2 (EC 4.1.1.-),Serine decarboxylase 3 (EC 4.1.1.-),Os10g0105700 protein (Fragment),Os11g0473832 protein (Fragment) Q8RV06,Q7X8D4,A0A0N7KRC0,A0A0P0Y215 SDC2_ORYSJ,SDC3_ORYSJ,A0A0N7KRC0_ORYSJ,A0A0P0Y215_ORYSJ Os10g0105700 LOC_Os10g01640 OsJ_30471 OSJNBa0065H03.2 OSJNBa0071K19.20,LOC_Os04g04640 OSJNBa0059H15.18 OSJNBa0070D17.5,Os10g0105700 OSNPB_100105700,Os11g0473832 OSNPB_110473832 FUNCTION: Catalyzes the biosynthesis of ethanolamine from serine. Decarboxylation of free serine is the major source of ethanolamine production in plants and ethanolamine metabolism is crucial for the synthesis of choline, phosphatidylethanolamine (PE) and phosphatidylcholine (PC), and thus for plant growth (By similarity). {ECO:0000250}. ENOG411EDJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: dipeptidylpeptidase Os07g0689400 protein A0A0P0XAH9 A0A0P0XAH9_ORYSJ Os07g0689400 OSNPB_070689400 ENOG411EDJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ring finger protein NA NA NA NA NA NA NA ENOG411EDJ3 Q9M0Q0,Q9SSP1 Q9M0Q0_ARATH,Q9SSP1_ARATH Disease resistance protein (TIR-NBS class) (Uncharacterized protein AT4g09420),Disease resistance protein (TIR-NBS class) (Similar to part of downy mildew resistance protein RPP5) 51349,47988 Disease resistance protein (TIR-NBS class) (Uncharacterized protein AT4g09420),Disease resistance protein (TIR-NBS class) (Similar to part of downy mildew resistance protein RPP5) ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2133732;,locus:2032587; AT4G09420,AT1G72850 TIR NA NA NA NA NA NA NA ENOG411EDJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EDJM F4J573 F4J573_ARATH Late embryogenesis abundant protein (LEA) family protein 32559 Late embryogenesis abundant protein (LEA) family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuole [GO:0005773] locus:2090552; AT3G17520 late embryogenesis abundant domain-containing protein NA NA NA NA NA NA NA ENOG411EDJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EDJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EDJC ZIP8,IRT1 Q8S3W4,Q38856 ZIP8_ARATH,IRT1_ARATH Probable zinc transporter 8 (ZRT/IRT-like protein 8),Fe(2+) transport protein 1 (Fe(II) transport protein 1) (Iron-regulated transporter 1) DISRUPTION PHENOTYPE: Plants exhibit a lethal chlorotic phenotype. {ECO:0000269|PubMed:12084823}. Chlorotic; Few flowers; Sterile; Reduced iron uptake; Phenotype enhanced under short days; Heterozygotes: Early flowering under short days-C. Curie-2002 FUNCTION: Probably mediates zinc uptake from the rhizosphere. {ECO:0000250}.,FUNCTION: High-affinity iron transporter that plays a key role in the uptake of iron from the rhizosphere across the plasma membrane in the root epidermal layer. Acts as the principal regulator of iron homeostasis in planta. Also mediates the heavy metals uptake under iron-deficiency by its ability to transport cobalt, cadmium, manganese and/or zinc ions. {ECO:0000269|PubMed:12084823}. MISCELLANEOUS: Inhibited by cadmium and Fe(2+) ions and at 100-fold excess inhibited by cobalt, manganese and zinc ions.; MISCELLANEOUS: The availability of secondary non-iron metal substrates (Zn, Mn, and Co) controls the localization of IRT1 between the outer polar domain of the plasma membrane and early endosome/trans-Golgi network in root epidermal cells. {ECO:0000269|PubMed:24843126}. ARA:AT4G19690-MONOMER;MetaCyc:AT4G19690-MONOMER; 37197,36727 Probable zinc transporter 8 (ZRT/IRT-like protein 8),Fe(2+) transport protein 1 (Fe(II) transport protein 1) (Iron-regulated transporter 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385]; zinc II ion transmembrane transport [GO:0071577],early endosome [GO:0005769]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; vacuole [GO:0005773]; copper uptake transmembrane transporter activity [GO:0015088]; iron ion transmembrane transporter activity [GO:0005381]; zinc ion transmembrane transporter activity [GO:0005385]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; iron ion homeostasis [GO:0055072]; metal ion transport [GO:0030001]; nickel cation transport [GO:0015675]; response to bacterium [GO:0009617] TISSUE SPECIFICITY: Expressed in the external cell layers of the root including the lateral branching zone. Also detected in flowers before pollination. {ECO:0000269|PubMed:12084823}. locus:2133965; AT5G45105,AT4G19690 ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411EDJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CobW_C NA NA NA NA NA NA NA ENOG411EDJX F4I4Z0 F4I4Z0_ARATH Cysteine/Histidine-rich C1 domain family protein 70733 Cysteine/Histidine-rich C1 domain family protein intracellular [GO:0005622]; intracellular signal transduction [GO:0035556] locus:2011972; AT1G50190 C1 domain NA NA NA NA NA NA NA ENOG411EDJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0609100 protein A0A0P0W027 A0A0P0W027_ORYSJ Os03g0609100 OSNPB_030609100 ENOG411EDJU LECRK53,LecRK-V.3 O22834,A0A1P8AXA2 LRK53_ARATH,A0A1P8AXA2_ARATH Probable L-type lectin-domain containing receptor kinase V.3 (Arabidopsis thaliana lectin-receptor kinase c2) (AthlecRK-c2) (LecRK-V.3) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein 2.7.11.1 74398,70533 Probable L-type lectin-domain containing receptor kinase V.3 (Arabidopsis thaliana lectin-receptor kinase c2) (AthlecRK-c2) (LecRK-V.3) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] locus:2043939; AT2G43690 Legume lectin domain NA NA NA NA NA NA NA ENOG411EDJQ ERF094 Q9LND1 ERF94_ARATH Ethylene-responsive transcription factor ERF094 (Protein OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) No accumulation of ORA59 transcripts upon JA or ethephon treatment. Increased susceptibility to B.cinera infection. Susceptible to Botrytis cinerea-J. Memelink-2008 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene. {ECO:0000269|PubMed:18467450}. 27090 Ethylene-responsive transcription factor ERF094 (Protein OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; transcription, DNA-templated [GO:0006351] locus:2038500; AT1G06160 octadecanoid-responsive arabidopsis ap2 erf 59 Os07g0410700 protein (Putative ethylene response factor ERF1) (cDNA clone:001-105-A10, full insert sequence) Q8H312 Q8H312_ORYSJ P0710F09.111 Os07g0410700 OsJ_23940 OSNPB_070410700 ENOG411E75Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0480600 protein Q0J0W3 Q0J0W3_ORYSJ Os09g0480600 Os09g0480600 OSNPB_090480600 ENOG411E75Y MHF15.20 Q9FNI0 Q9FNI0_ARATH Uncharacterized protein MHF15.4 17226 Uncharacterized protein MHF15.4 locus:2164250; AT5G06280 NA NA NA NA NA NA NA NA ENOG411E75S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidinotransferase NA NA NA NA NA NA NA ENOG411E75R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E75Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0118P14.9 protein (Os04g0403900 protein) (Os04g0403901 protein) Q7XSC7 Q7XSC7_ORYSJ Os04g0403900 Os04g0403901 OSJNBb0118P14.9 OSNPB_040403900 ENOG411E75P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0581200 protein (cDNA clone:001-103-F10, full insert sequence) Q6EUN2 Q6EUN2_ORYSJ Os02g0581200 OJ1115_A05.17 OsJ_07277 OSNPB_020581200 ENOG411E75W Q93XY9,Q9M0R1 Q93XY9_ARATH,Q9M0R1_ARATH Transmembrane protein (Uncharacterized protein At1g35430; F12A4.3),At4g09170 (Expressed protein) (Transmembrane protein) (Uncharacterized protein AT4g09170) 14241,14939 Transmembrane protein (Uncharacterized protein At1g35430; F12A4.3),At4g09170 (Expressed protein) (Transmembrane protein) (Uncharacterized protein AT4g09170) integral component of membrane [GO:0016021] locus:2008653;,locus:2141568; AT1G35430,AT4G09170 NA NA NA NA NA NA NA NA ENOG411E75V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0589100 protein (cDNA clone:J023143G15, full insert sequence) Q5ZC74 Q5ZC74_ORYSJ Os01g0589100 OsJ_02413 OSNPB_010589100 P0415C01.9 ENOG411E75U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0675500 protein) Q9FRG1 Q9FRG1_ORYSJ Os03g47210 Os03g0675500 LOC_Os03g47210 OsJ_12079 OSNPB_030675500 ENOG411E75T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABA/WDS induced protein Os01g0963600 protein (Putative bundle sheath cell specific protein 1) (cDNA clone:001-033-F08, full insert sequence) (cDNA clone:006-309-D08, full insert sequence) (cDNA clone:J013041E22, full insert sequence) Q94DL7 Q94DL7_ORYSJ Os01g0963600 OsJ_04866 OSNPB_010963600 P0483G10.38 ENOG411E75K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E75J Q8LC91 Q8LC91_ARATH Transmembrane protein (Uncharacterized protein At1g05575) (Uncharacterized protein At1g05575/F3F20.22) 9525 Transmembrane protein (Uncharacterized protein At1g05575) (Uncharacterized protein At1g05575/F3F20.22) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; anaerobic respiration [GO:0009061] locus:505006102; AT1G05575 NA NA NA NA NA NA NA NA ENOG411E75I Q9SJV7,Q0WWE3,F4HXY8 Q9SJV7_ARATH,Q0WWE3_ARATH,F4HXY8_ARATH Cytochrome b-c1 complex subunit 6,Ubiquinol-cytochrome C reductase hinge protein FUNCTION: This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1. {ECO:0000256|PIRNR:PIRNR000019}. 7372,7983,19019 Cytochrome b-c1 complex subunit 6,Ubiquinol-cytochrome C reductase hinge protein mitochondrial respiratory chain complex III [GO:0005750]; ubiquinol-cytochrome-c reductase activity [GO:0008121]; aerobic respiration [GO:0009060]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122],mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; ubiquinol-cytochrome-c reductase activity [GO:0008121]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122],mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; ubiquinol-cytochrome-c reductase activity [GO:0008121]; aerobic respiration [GO:0009060]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122] locus:2045730;,locus:2037838; AT2G01090,AT1G15120 This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1 (By similarity) Cytochrome b-c1 complex subunit 6 Q0IUE3 Q0IUE3_ORYSJ Os11g0162200 OSNPB_110162200 FUNCTION: This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1. {ECO:0000256|PIRNR:PIRNR000019}. ENOG411E75H F4I2K8 F4I2K8_ARATH Cox19 family protein (CHCH motif) 7069 Cox19 family protein (CHCH motif) locus:6530298135; AT1G09794 Domain of unknown function (DUF1903) Expressed protein (Os12g0182600 protein) (cDNA clone:J013051E22, full insert sequence) Q2QWU3 Q2QWU3_ORYSJ Os12g0182600 LOC_Os12g08210 OsJ_35445 OSNPB_120182600 ENOG411E75N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0772900 protein) (cDNA clone:002-170-A02, full insert sequence) Q7XZW2 Q7XZW2_ORYSJ LOC_Os03g56200 Os03g0772900 OsJ_12755 OSJNBb0094O03.8 OSNPB_030772900 ENOG411E75M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E75C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B1358B12.5 protein (Os04g0461750 protein),Os10g0360000 protein,Os09g0521350 protein (Fragment),Os01g0594400 protein Q6MWF0,A3C3Y8,A0A0P0XQ74,A0A0P0V4S1 Q6MWF0_ORYSJ,A3C3Y8_ORYSJ,A0A0P0XQ74_ORYSJ,A0A0P0V4S1_ORYSJ B1358B12.5 Os04g0461750 OSNPB_040461750,Os10g0360000 OsJ_31219 OSNPB_100360000,Os09g0521350 OSNPB_090521350,Os01g0594400 OSNPB_010594400 ENOG411E75B Q8GXU7 Q8GXU7_ARATH At4g13612 (Uncharacterized protein family SERF) 7178 At4g13612 (Uncharacterized protein family SERF) locus:1005716191; AT4G13615 4F5 protein family Os11g0425600 protein Q0IT26 Q0IT26_ORYSJ Os11g0425600 OSNPB_110425600 ENOG411E75A CID6,CID5 Q6NQH9,Q9LYE5,C0Z2E4 CID6_ARATH,CID5_ARATH,C0Z2E4_ARATH Polyadenylate-binding protein-interacting protein 6 (PABP-interacting protein 6) (Poly(A)-binding protein-interacting protein 6) (PAM2-containing protein CID6) (Protein CTC-INTERACTING DOMAIN 6),Polyadenylate-binding protein-interacting protein 5 (PABP-interacting protein 5) (Poly(A)-binding protein-interacting protein 5) (PAM2-containing protein CID5) (Protein CTC-INTERACTING DOMAIN 5) (Protein INCREASED POLYPLOIDY LEVEL IN DARKNESS 1),AT5G25540 protein (CTC-interacting domain 6) FUNCTION: Promotes polyploidy in dark-grown seedlings. Regulates the endocycle leading to hypocotyl elongation. {ECO:0000269|PubMed:16897495}. MISCELLANEOUS: Overexpression of CID5/IPD1 leads to increased ploidy levels and longer hypocotyls in dark-grown seedlings compared to wild-type. 19347,16560,15135 Polyadenylate-binding protein-interacting protein 6 (PABP-interacting protein 6) (Poly(A)-binding protein-interacting protein 6) (PAM2-containing protein CID6) (Protein CTC-INTERACTING DOMAIN 6),Polyadenylate-binding protein-interacting protein 5 (PABP-interacting protein 5) (Poly(A)-binding protein-interacting protein 5) (PAM2-containing protein CID5) (Protein CTC-INTERACTING DOMAIN 5) (Protein INCREASED POLYPLOIDY LEVEL IN DARKNESS 1),AT5G25540 protein (CTC-interacting domain 6) DEVELOPMENTAL STAGE: Specifically expressed in mitotically dividing cells of seedlings. {ECO:0000269|PubMed:16897495}. TISSUE SPECIFICITY: Specifically expressed in immature siliques. {ECO:0000269|PubMed:15650869}. locus:2179439;,locus:2144221; AT5G25540,AT5G11440 NA NA NA NA NA NA NA NA ENOG411E75G LEA Q96261 DHLEA_ARATH Probable dehydrin LEA 19298 Probable dehydrin LEA cytosol [GO:0005829]; cold acclimation [GO:0009631]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] locus:2050095; AT2G21490 dehydrin NA NA NA NA NA NA NA ENOG411E75F Q9FVW9 Q9FVW9_ARATH At1g77400 (At1g77400 protein) (Extensin-like protein) (Uncharacterized protein At1g77400) (Uncharacterized protein F2P24.15) 25934 At1g77400 (At1g77400 protein) (Extensin-like protein) (Uncharacterized protein At1g77400) (Uncharacterized protein F2P24.15) locus:2031442; AT1G77400 NA NA NA NA NA NA NA NA ENOG411E75E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0575100 protein (Fragment) A0A0P0WYH2 A0A0P0WYH2_ORYSJ Os06g0575100 OSNPB_060575100 ENOG411E75D CIF1,CIF2 Q84MD2,O65684,A0A1P8B901 CIF1_ARATH,CIF2_ARATH,A0A1P8B901_ARATH Protein CASPARIAN STRIP INTEGRITY FACTOR 1,Protein CASPARIAN STRIP INTEGRITY FACTOR 2,Transmembrane protein DISRUPTION PHENOTYPE: No detectable phenotype in cif1-1. The double mutant cif1-1 cif2-1 is defective in ion homeostasis in the xylem due to defect in endodermal barrier formation in the roots. Highly sensitive to excess iron. Retarded growth under low-potassium conditions. Repeatedly interrupted, discontinuous Casparian strip due to patch-like localization of the CASPs proteins. Reduced rosette leaf size. {ECO:0000269|PubMed:28104889}.,DISRUPTION PHENOTYPE: Abnormal endodermal barrier formation in cif2-1. The double mutant cif1-1 cif2-1 is defective in ion homeostasis in the xylem due to defect in endodermal barrier formation in the roots. Highly sensitive to excess iron. Retarded growth under low-potassium conditions. Repeatedly interrupted, discontinuous Casparian strip due to patch-like localization of the CASPs proteins. Reduced rosette leaf size. {ECO:0000269|PubMed:28104889}. FUNCTION: Peptide hormone required for contiguous Casparian strip diffusion barrier formation in roots via the regulation of CASPs protein expression and distribution in a GSO1-GSO2 signaling pathway. The Casparian strip is required for ion homeostasis (e.g. iron and potassium ions). {ECO:0000269|PubMed:28104889}. 9512,9437,6977 Protein CASPARIAN STRIP INTEGRITY FACTOR 1,Protein CASPARIAN STRIP INTEGRITY FACTOR 2,Transmembrane protein Casparian strip [GO:0048226]; hormone activity [GO:0005179]; cell wall organization [GO:0071555]; ion homeostasis [GO:0050801]; iron ion homeostasis [GO:0055072]; multicellular organism development [GO:0007275]; regulation of root morphogenesis [GO:2000067]; response to acidic pH [GO:0010447]; response to iron ion [GO:0010039],Casparian strip [GO:0048226]; hormone activity [GO:0005179]; cell wall organization [GO:0071555]; ion homeostasis [GO:0050801]; iron ion homeostasis [GO:0055072]; multicellular organism development [GO:0007275]; pollen tube growth [GO:0009860]; regulation of root morphogenesis [GO:2000067]; response to acidic pH [GO:0010447]; response to iron ion [GO:0010039],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Accumulates in the stele, especially at the phloem pole, of the mature region of the primary roots. {ECO:0000269|PubMed:28104889}.,DEVELOPMENTAL STAGE: Confined to the root stele in the elongation and differentiation zones of both primary and lateral roots. Disappears at the sites of lateral root initiation. In the root tip, present at and above approximately 10 cells after the onset of elongation. {ECO:0000269|PubMed:28104889}. TISSUE SPECIFICITY: Expressed exclusively in the root stele. {ECO:0000269|PubMed:28104889}. locus:1006230017;,locus:2139604; AT2G16385,AT4G34600 NA NA NA NA NA NA NA NA ENOG411E759 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E758 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E753 Q8GXZ7,Q8L9X5 Q8GXZ7_ARATH,Q8L9X5_ARATH At1g52821 (Sporulation-specific protein),At4g14615 (Sporulation-specific protein) (Uncharacterized protein At4g14615/FCAALL.205) 8714,8593 At1g52821 (Sporulation-specific protein),At4g14615 (Sporulation-specific protein) (Uncharacterized protein At4g14615/FCAALL.205) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; mitochondrial respiratory chain complex IV assembly [GO:0033617] locus:1005716767;,locus:505006462; AT1G52825,AT4G14615 NA Os07g0181800 protein (cDNA clone:J023063D04, full insert sequence) Q0D862 Q0D862_ORYSJ Os07g0181800 Os07g0181800 OSNPB_070181800 ENOG411E752 GPRP Q9M0L8,Q39115 Q9M0L8_ARATH,Q39115_ARATH At4g19200 (Proline-rich family protein) (Uncharacterized protein AT4g19200),AT5g45350/MFC19_1 (GPRP protein) (Proline-rich family protein) 17745,17830 At4g19200 (Proline-rich family protein) (Uncharacterized protein AT4g19200),AT5g45350/MFC19_1 (GPRP protein) (Proline-rich family protein) locus:2134751;,locus:2163493; AT4G19200,AT5G45350 NA NA NA NA NA NA NA NA ENOG411E751 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411E750 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Nonspecific lipid-transfer protein 2, putative, expressed (Os11g0620300 protein) (cDNA clone:002-134-F08, full insert sequence) Q2R132 Q2R132_ORYSJ Os11g0620300 LOC_Os11g40530 Os11g0620300 OsJ_34667 OSNPB_110620300 ENOG411E757 A0A1P8BCC3,F4JZJ5 A0A1P8BCC3_ARATH,F4JZJ5_ARATH Cox19-like CHCH family protein 8840,8952 Cox19-like CHCH family protein mitochondrial intermembrane space [GO:0005758]; mitochondrial respiratory chain complex IV assembly [GO:0033617] locus:2144980; AT5G18920 NA Os05g0404300 protein (cDNA clone:002-133-B04, full insert sequence) Q6AUK4 Q6AUK4_ORYSJ Os05g0404300 Os05g0404300 OsJ_18496 OSJNBb0006J12.17 OSNPB_050404300 ENOG411E756 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl CoA binding protein NA NA NA NA NA NA NA ENOG411E755 F17A17.25 Q9SFC3 Q9SFC3_ARATH AT3g07910/F17A17_25 (F17A17.25 protein) (Reactive oxygen species modulator-like protein) 7368 AT3g07910/F17A17_25 (F17A17.25 protein) (Reactive oxygen species modulator-like protein) integral component of membrane [GO:0016021] locus:2077492; AT3G07910 CONTAINS InterPro DOMAIN s Reactive oxygen species modulator 1 (InterPro IPR018450) NA NA NA NA NA NA NA ENOG411E754 Q9SUG9 Q9SUG9_ARATH Putative membrane lipoprotein (Uncharacterized protein AT4g30770) (Uncharacterized protein T10C21.120) 17158 Putative membrane lipoprotein (Uncharacterized protein AT4g30770) (Uncharacterized protein T10C21.120) integral component of membrane [GO:0016021] locus:2131924; AT4G30770 NA NA NA NA NA NA NA NA ENOG411DR9Q Q9SK74 C3H21_ARATH Zinc finger CCCH domain-containing protein 21 (AtC3H21) 42389 Zinc finger CCCH domain-containing protein 21 (AtC3H21) DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:2039022; AT2G20280 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 11 (OsC3H11),Os01g0834700 protein (Fragment) Q0JHZ2,A0A0P0VA36 C3H11_ORYSJ,A0A0P0VA36_ORYSJ Os01g0834700 LOC_Os01g61830 P0460C04.40 P0506B12.7,Os01g0834700 OSNPB_010834700 ENOG411DR9P VAMP714 Q9FMR5 VA714_ARATH Vesicle-associated membrane protein 714 (AtVAMP714) The mutant plants are indistinguishable from the wild-type plants when grown in 1/2 strength Murashige and Skoog (MS) medium. However when exposed to salt stress they exhibit increased salt tolerance. Resistant to salt stress-A. Levine-2006 FUNCTION: Involved in the targeting and/or fusion of transport vesicles to their target membrane. {ECO:0000305|PubMed:11115874}. R-ATH-8856825; 25317 Vesicle-associated membrane protein 714 (AtVAMP714) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; vacuole [GO:0005773]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; response to salt stress [GO:0009651]; vesicle fusion [GO:0006906] TISSUE SPECIFICITY: Highly expressed in leaves, stems and roots. Detected in flowers. {ECO:0000269|PubMed:15342965}. locus:2176342; AT5G22360 vesicle-associated membrane protein Os10g0154000 protein (Synaptobrevin family protein, expressed) (cDNA clone:006-307-E10, full insert sequence) (cDNA clone:J013036P17, full insert sequence),Os10g0154000 protein Q33B02,A0A0P0XRP9 Q33B02_ORYSJ,A0A0P0XRP9_ORYSJ Os10g0154000 LOC_Os10g06540 Os10g0154000 OsJ_30751 OSNPB_100154000,Os10g0154000 OSNPB_100154000 ENOG411DR9S AMC9 Q9FYE1 MCA9_ARATH Metacaspase-9 (AtMC9) (EC 3.4.22.-) [Cleaved into: Metacaspase-9 subunit p20; Metacaspase-9 subunit p10 (Metacaspase 2f) (AtMCP2f)] FUNCTION: Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Required for proteolytic processing of GRI (PubMed:25398910). {ECO:0000269|PubMed:25398910}. 3.4.22.- 35505 Metacaspase-9 (AtMC9) (EC 3.4.22.-) [Cleaved into: Metacaspase-9 subunit p20; Metacaspase-9 subunit p10 (Metacaspase 2f) (AtMCP2f)] apoplast [GO:0048046]; cysteine-type peptidase activity [GO:0008234] TISSUE SPECIFICITY: Expressed in root tips, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:17028019, ECO:0000269|PubMed:21395887}. locus:2146648; AT5G04200 Caspase domain Latex-abundant protein, putative, expressed (Os11g0134700 protein) (cDNA clone:J013001B03, full insert sequence) Q2RAW9 Q2RAW9_ORYSJ Os11g0134700 LOC_Os11g04010 Os11g0134700 OSNPB_110134700 ENOG411DR9R Q93Z70,A0A1P8B108 ARGC_ARATH,A0A1P8B108_ARATH Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic (AGPR) (EC 1.2.1.38) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase),Putative N-acetyl-gamma-glutamyl-phosphate reductase PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 3/4. ARA:AT2G19940-MONOMER; 1.2.1.38 44136,42822 Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic (AGPR) (EC 1.2.1.38) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase),Putative N-acetyl-gamma-glutamyl-phosphate reductase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; nucleolus [GO:0005730]; copper ion binding [GO:0005507]; N-acetyl-gamma-glutamyl-phosphate reductase activity [GO:0003942]; NAD binding [GO:0051287]; protein dimerization activity [GO:0046983]; arginine biosynthetic process [GO:0006526]; response to cadmium ion [GO:0046686],cytoplasm [GO:0005737]; N-acetyl-gamma-glutamyl-phosphate reductase activity [GO:0003942]; NAD binding [GO:0051287]; protein dimerization activity [GO:0046983]; arginine biosynthetic process [GO:0006526] locus:2051980; AT2G19940 N-acetyl-gamma-glutamyl-phosphate reductase Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic (AGPR) (EC 1.2.1.38) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase),Os10g0494200 protein Q6AV34,A0A0N7KS03 ARGC_ORYSJ,A0A0N7KS03_ORYSJ Os03g0617900 LOC_Os03g42110 OSJNBa0063J18.8,Os10g0494200 OSNPB_100494200 ENOG411DR9U Q9SR09 Q9SR09_ARATH AT3g04650/F7O18_13 (F7O18.13 protein) (FAD/NAD(P)-binding oxidoreductase family protein) 52363 AT3g04650/F7O18_13 (F7O18.13 protein) (FAD/NAD(P)-binding oxidoreductase family protein) chloroplast [GO:0009507]; oxidoreductase activity [GO:0016491] locus:2084903; AT3G04650 Inherit from COG: fad dependent oxidoreductase Expressed protein (Os12g0597400 protein) (cDNA clone:J013078M05, full insert sequence) Q2QMN9 Q2QMN9_ORYSJ LOC_Os12g40540 Os12g0597400 OSNPB_120597400 ENOG411DR9W F24I3.190,MUF9.2 Q9FKK6,Q9M1I9,A0A1P8BGB8 EXO5_ARATH,Q9M1I9_ARATH,A0A1P8BGB8_ARATH Exonuclease V, chloroplastic (Exo V) (EC 3.1.-.-),Exonuclease V (Uncharacterized protein F24I3.190),Exonuclease V-like protein FUNCTION: Single-stranded DNA (ssDNA) bidirectional exonuclease. Has both 5'-3' and 3'-5' exonuclease activities with a strong preference for 5'-ends (By similarity). {ECO:0000250}. 3.1.-.- 46973,14687,36400 Exonuclease V, chloroplastic (Exo V) (EC 3.1.-.-),Exonuclease V (Uncharacterized protein F24I3.190),Exonuclease V-like protein chloroplast [GO:0009507]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; single-stranded DNA 5'-3' exodeoxyribonuclease activity [GO:0045145],exonuclease activity [GO:0004527],single-stranded DNA 5'-3' exodeoxyribonuclease activity [GO:0045145] locus:2175093;,locus:2080675; AT5G60370,AT3G57110 Pfam:Morph_protein1 Os05g0123300 protein A0A0P0WHF9 A0A0P0WHF9_ORYSJ Os05g0123300 OSNPB_050123300 ENOG411DR9V PME39,PME56,PME38,PME40,PME2,PME3 O81415,Q4PT34,O81320,O81301,Q42534,O49006 PME39_ARATH,PME56_ARATH,PME38_ARATH,PME40_ARATH,PME2_ARATH,PME3_ARATH Probable pectinesterase/pectinesterase inhibitor 39 [Includes: Pectinesterase inhibitor 39 (Pectin methylesterase inhibitor 39); Pectinesterase 39 (PE 39) (EC 3.1.1.11) (Pectin methylesterase 39) (AtPME39)],Probable pectinesterase 56 (PE 56) (EC 3.1.1.11) (Pectin methylesterase 56) (AtPME56),Putative pectinesterase/pectinesterase inhibitor 38 [Includes: Pectinesterase inhibitor 38 (Pectin methylesterase inhibitor 38); Pectinesterase 38 (PE 38) (EC 3.1.1.11) (Pectin methylesterase 38) (AtPME38)],Probable pectinesterase/pectinesterase inhibitor 40 [Includes: Pectinesterase inhibitor 40 (Pectin methylesterase inhibitor 40); Pectinesterase 40 (PE 40) (EC 3.1.1.11) (Pectin methylesterase 40) (AtPME40)],Pectinesterase 2 (PE 2) (EC 3.1.1.11) (Pectin methylesterase 2) (AtPME2),Pectinesterase/pectinesterase inhibitor 3 [Includes: Pectinesterase inhibitor 3 (Pectin methylesterase inhibitor 3); Pectinesterase 3 (PE 3) (EC 3.1.1.11) (Pectin methylesterase 27) (AtPME27) (Pectin methylesterase 3)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT4G02300-MONOMER;,ARA:AT1G11370-MONOMER;,ARA:AT4G00190-MONOMER;,ARA:AT4G02320-MONOMER;,ARA:AT1G53830-MONOMER;,ARA:AT3G14310-MONOMER; 3.1.1.11 59824,31400,52417,57894,64173,64256 Probable pectinesterase/pectinesterase inhibitor 39 [Includes: Pectinesterase inhibitor 39 (Pectin methylesterase inhibitor 39); Pectinesterase 39 (PE 39) (EC 3.1.1.11) (Pectin methylesterase 39) (AtPME39)],Probable pectinesterase 56 (PE 56) (EC 3.1.1.11) (Pectin methylesterase 56) (AtPME56),Putative pectinesterase/pectinesterase inhibitor 38 [Includes: Pectinesterase inhibitor 38 (Pectin methylesterase inhibitor 38); Pectinesterase 38 (PE 38) (EC 3.1.1.11) (Pectin methylesterase 38) (AtPME38)],Probable pectinesterase/pectinesterase inhibitor 40 [Includes: Pectinesterase inhibitor 40 (Pectin methylesterase inhibitor 40); Pectinesterase 40 (PE 40) (EC 3.1.1.11) (Pectin methylesterase 40) (AtPME40)],Pectinesterase 2 (PE 2) (EC 3.1.1.11) (Pectin methylesterase 2) (AtPME2),Pectinesterase/pectinesterase inhibitor 3 [Includes: Pectinesterase inhibitor 3 (Pectin methylesterase inhibitor 3); Pectinesterase 3 (PE 3) (EC 3.1.1.11) (Pectin methylesterase 27) (AtPME27) (Pectin methylesterase 3)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; defense response to Gram-negative bacterium [GO:0050829]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],apoplast [GO:0048046]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; defense response to Gram-negative bacterium [GO:0050829]; pectin catabolic process [GO:0045490]; response to fungus [GO:0009620]; response to nematode [GO:0009624] DEVELOPMENTAL STAGE: Expression restricted to early to mid-stage of silique development. {ECO:0000269|PubMed:16622707}.,DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques but not in flower buds. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:9767082}. locus:2137839;,locus:2200156;,locus:2126941;,locus:2133219;,locus:2197056;,locus:2091000; AT4G02300,AT1G11370,AT4G00190,AT4G02320,AT1G53830,AT3G14310 pectinesterase Pectinesterase (EC 3.1.1.11),Pectinesterase (EC 3.1.1.11) (Fragment) Q6Z2E1,Q53P90,Q6ZDX2,A0A0P0V1X3,A0A0P0XPW4 Q6Z2E1_ORYSJ,Q53P90_ORYSJ,Q6ZDX2_ORYSJ,A0A0P0V1X3_ORYSJ,A0A0P0XPW4_ORYSJ Os08g0220400 Os08g0220400 OSNPB_080220400 P0691F12.18,Os11g0172100 LOC_Os11g07090 OSNPB_110172100,P0618H09.21 Os07g0675100 OsJ_25560 OSNPB_070675100 P0037D09.23,Os01g0312500 OSNPB_010312500,Os09g0545600 OSNPB_090545600 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. ENOG411DR9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seed maturation protein Os06g0341300 protein (Putative Late embryogenesis abundant protein D-34) (cDNA clone:002-131-G03, full insert sequence) Q5Z9Y8 Q5Z9Y8_ORYSJ Os06g0341300 Os06g0341300 OSNPB_060341300 P0428A03.24 P0459H02.1 ENOG411DR9A PDAT1,PDAT2,PDAT Q9FNA9,Q9FYC7,A0A1P8BD95,A0A1P8BD92 PDAT1_ARATH,PDAT2_ARATH,A0A1P8BD95_ARATH,A0A1P8BD92_ARATH Phospholipid:diacylglycerol acyltransferase 1 (AtPDAT) (EC 2.3.1.158),Putative phospholipid:diacylglycerol acyltransferase 2 (AtPDAT2) (EC 2.3.1.158),Phospholipid:diacylglycerol acyltransferase DISRUPTION PHENOTYPE: No visible phenotype. No changes in the fatty acid content and composition of seeds. Dgat1 and pdat1 double mutants produce sterile deformed pollen. {ECO:0000269|PubMed:15907694, ECO:0000269|PubMed:20040537}. FUNCTION: Triacylglycerol formation by an acyl-CoA independent pathway. The enzyme preferentially transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid. Involved in epoxy and hydroxy fatty acid accumulation in seeds. Has complementary functions with DAG1 that are essential for triacylglycerol synthesis and normal development of both seeds and pollen. {ECO:0000269|PubMed:15247387, ECO:0000269|PubMed:20040537, ECO:0000269|PubMed:20101470}. PATHWAY: Glycerolipid metabolism; triacylglycerol biosynthesis. ARA:AT5G13640-MONOMER;MetaCyc:AT5G13640-MONOMER;,ARA:AT3G44830-MONOMER; 2.3.1.158;2.3.1.20; 2.3.1.158 74157,73653,56518,58074 Phospholipid:diacylglycerol acyltransferase 1 (AtPDAT) (EC 2.3.1.158),Putative phospholipid:diacylglycerol acyltransferase 2 (AtPDAT2) (EC 2.3.1.158),Phospholipid:diacylglycerol acyltransferase endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; O-acyltransferase activity [GO:0008374]; phospholipid:diacylglycerol acyltransferase activity [GO:0046027]; glycerol metabolic process [GO:0006071]; triglyceride biosynthetic process [GO:0019432],integral component of membrane [GO:0016021]; O-acyltransferase activity [GO:0008374]; phospholipid:diacylglycerol acyltransferase activity [GO:0046027]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629],O-acyltransferase activity [GO:0008374]; lipid metabolic process [GO:0006629] DEVELOPMENTAL STAGE: Peak of expression in seeds 9 days after flowering. {ECO:0000269|PubMed:20101470}. TISSUE SPECIFICITY: Ubiquitous. Highest expression in young developing seeds. {ECO:0000269|PubMed:15247387, ECO:0000269|PubMed:20040537, ECO:0000269|PubMed:20101470}. locus:2173244;,locus:2082147; AT5G13640,AT3G44830 Phospholipid diacylglycerol acyltransferase Os09g0444200 protein (Putative lecithin diacylglycerol cholesterol acyltransferase) (cDNA clone:J023001J23, full insert sequence),Os09g0444200 protein (Fragment) Q67U60,A0A0P0XNY8 Q67U60_ORYSJ,A0A0P0XNY8_ORYSJ P0046G12.50-1 Os09g0444200 OJ1123_B08.7-1 OSNPB_090444200,Os09g0444200 OSNPB_090444200 ENOG411DR9C PCMP-A2 Q0WNP3 PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520, chloroplastic (Protein PIGMENT-DEFICIENT MUTANT 1) (Protein SEEDLING LETHAL 1) DISRUPTION PHENOTYPE: Albino lethal phenotype with severe chloroplast development defects. {ECO:0000269|PubMed:24144791, ECO:0000269|Ref.7}. FUNCTION: Required for proper chloroplast development (Ref.7, PubMed:24144791). Involved in the regulation of plastid gene expression probably through regulation of plastid-encoded polymerase (PEP) dependent chloroplast transcription (PubMed:24144791). Required for RNA editing of several chloroplastic transcripts, especially accD transcripts (PubMed:24144791, PubMed:26123918). Required for processing of the chloroplastic rpoA pre-mRNA (Ref.6, Ref.7). Required for the monocistronic rpoA transcript processing from the rpl23-rpl2-rps19-rpl22-rps3-rpl16-rpl14-rps8-rpl36-rps11-rpoA polycistron. Binds the intergenic sequence of rps11-rpoA for rpoA monocistronic RNA cleavage (Ref.7). {ECO:0000269|PubMed:24144791, ECO:0000269|PubMed:26123918, ECO:0000269|Ref.6, ECO:0000269|Ref.7}. 69275 Pentatricopeptide repeat-containing protein At4g18520, chloroplastic (Protein PIGMENT-DEFICIENT MUTANT 1) (Protein SEEDLING LETHAL 1) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA modification [GO:1900865]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed specifically in aerial greening tissues, such as cotyledons, rosette leaves, cauline leaves, stems, sepals, stamens, carpels and siliques. {ECO:0000269|PubMed:24144791}. locus:2124603; AT4G18520 Pentatricopeptide repeat-containing protein Os03g0644100 protein (Os03g0644200 protein) (PPR repeat containing protein) (PPR986-12, putative, expressed) (cDNA clone:J033066I06, full insert sequence) Q60DN6 Q60DN6_ORYSJ Os03g0644200 LOC_Os03g44210 Os03g0644100 OSJNBa0038E17.22 OSNPB_030644200 ENOG411DR9B PPC2,PPC1,PPC3 Q5GM68,Q9MAH0,Q84VW9 CAPP2_ARATH,CAPP1_ARATH,CAPP3_ARATH Phosphoenolpyruvate carboxylase 2 (AtPPC2) (PEPC 2) (PEPCase 2) (EC 4.1.1.31),Phosphoenolpyruvate carboxylase 1 (AtPPC1) (PEPC 1) (PEPCase 1) (EC 4.1.1.31) (107-kDa PEPC polypeptide),Phosphoenolpyruvate carboxylase 3 (AtPPC3) (PEPC 3) (PEPCase 3) (EC 4.1.1.31) No visible phenotype. FUNCTION: Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.,FUNCTION: Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Contributes probably to the adaptation to inorganic phosphate (Pi) deprivation. {ECO:0000269|PubMed:19228119}. ARA:GQT-2357-MONOMER;,ARA:AT3G14940-MONOMER;MetaCyc:AT3G14940-MONOMER; 4.1.1.31; 4.1.1.31 109753,110286,110160 Phosphoenolpyruvate carboxylase 2 (AtPPC2) (PEPC 2) (PEPCase 2) (EC 4.1.1.31),Phosphoenolpyruvate carboxylase 1 (AtPPC1) (PEPC 1) (PEPCase 1) (EC 4.1.1.31) (107-kDa PEPC polypeptide),Phosphoenolpyruvate carboxylase 3 (AtPPC3) (PEPC 3) (PEPCase 3) (EC 4.1.1.31) apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; phosphoenolpyruvate carboxylase activity [GO:0008964]; carbon fixation [GO:0015977]; leaf development [GO:0048366]; photosynthesis [GO:0015979]; tricarboxylic acid cycle [GO:0006099],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; phosphoenolpyruvate carboxylase activity [GO:0008964]; carbon fixation [GO:0015977]; cellular response to phosphate starvation [GO:0016036]; leaf development [GO:0048366]; photosynthesis [GO:0015979]; protein tetramerization [GO:0051262]; tricarboxylic acid cycle [GO:0006099],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; phosphoenolpyruvate carboxylase activity [GO:0008964]; carbon fixation [GO:0015977]; leaf development [GO:0048366]; photosynthesis [GO:0015979]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Expressed in all plant organs, with higher levels in stems and leaves. {ECO:0000269|PubMed:12805623}.,TISSUE SPECIFICITY: Expressed in all plant organs, with higher levels in roots. {ECO:0000269|PubMed:12805623, ECO:0000269|PubMed:19228119}.,TISSUE SPECIFICITY: Expressed in roots and siliques, and to a lower extent in stems, leaves and flowers. {ECO:0000269|PubMed:12805623}. locus:2041529;,locus:2009600;,locus:2086315; AT2G42600,AT1G53310,AT3G14940 phosphoenolpyruvate carboxylase Os01g0758300 protein (Putative phosphoenolpyruvate carboxylase 1),Os08g0366000 protein (Phosphoenolpyruvate carboxylase) (cDNA clone:J033055B18, full insert sequence),Os01g0758300 protein (Fragment),Os08g0366000 protein (Fragment),Os09g0315700 protein Q5JLS6,Q8H4V1,A0A0P0V8H5,A0A0P0XF10,A0A0P0XLG1,A0A0P0XFH1 Q5JLS6_ORYSJ,Q8H4V1_ORYSJ,A0A0P0V8H5_ORYSJ,A0A0P0XF10_ORYSJ,A0A0P0XLG1_ORYSJ,A0A0P0XFH1_ORYSJ Os01g0758300 B1131G08.12 OSNPB_010758300,OJ1484_G09.129-1 Os08g0366000 OsJ_27076 OSNPB_080366000,Os01g0758300 OSNPB_010758300,Os08g0366000 OSNPB_080366000,Os09g0315700 OSNPB_090315700 ENOG411DR9E TBL38,TBL37,TBL39 Q8VY22,O22960,Q9SIN2,A0A1P8B0E0 TBL38_ARATH,TBL37_ARATH,TBL39_ARATH,A0A1P8B0E0_ARATH Protein trichome birefringence-like 38,Protein trichome birefringence-like 37,Protein trichome birefringence-like 39,TRICHOME BIREFRINGENCE-LIKE 37 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 42709,43354,43166,28291 Protein trichome birefringence-like 38,Protein trichome birefringence-like 37,Protein trichome birefringence-like 39,TRICHOME BIREFRINGENCE-LIKE 37 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2029959;,locus:2055425;,locus:2041574; AT1G29050,AT2G34070,AT2G42570 function domain containing protein expressed Lustrin A-like (Os01g0652100 protein) (cDNA clone:J023013B17, full insert sequence) (cDNA clone:J023147O12, full insert sequence) Q8RZF8 Q8RZF8_ORYSJ Os01g0652100 OSJNBb0032K15.10-1 OSNPB_010652100 ENOG411DR9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0384600 protein Q0IY09 Q0IY09_ORYSJ Os10g0384600 Os10g0384600 OSNPB_100384600 ENOG411DR9G F4KA19 F4KA19_ARATH Calcium-binding EF hand family protein 36161 Calcium-binding EF hand family protein locus:2150476; AT5G28830 NA NA NA NA NA NA NA NA ENOG411DR9I PRK6,PRK3 Q3E991,Q9M1L7 PRK6_ARATH,PRK3_ARATH Pollen receptor-like kinase 6 (AtPRK6),Pollen receptor-like kinase 3 (AtPRK3) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Impaired response to the ovular attractant LURE1.2. {ECO:0000269|PubMed:26961657}. FUNCTION: Key receptor for sensing species-specific attractants in cooperation with other pollen receptor-like kinases. Essential for pollen tube reorientation toward attractant peptides. {ECO:0000269|PubMed:26961657}.,FUNCTION: Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth (PubMed:23024212). Can phosphorylate ROPGEF1 in vitro (PubMed:23024212). {ECO:0000269|PubMed:23024212}. 2.7.11.1 72637,70249 Pollen receptor-like kinase 6 (AtPRK6),Pollen receptor-like kinase 3 (AtPRK3) (EC 2.7.11.1) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube tip [GO:0090404]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; protein serine/threonine kinase activity [GO:0004674]; pollen tube guidance [GO:0010183],integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; regulation of pollen tube growth [GO:0080092] TISSUE SPECIFICITY: Expressed specifically in the pollen tube, predominantly at the tip. {ECO:0000269|PubMed:26961657}.,TISSUE SPECIFICITY: Expressed in pollen and/or in flowers, but not in leaves. {ECO:0000269|PubMed:12139002}. locus:2180409;,locus:2078546; AT5G20690,AT3G42880 inactive leucine-rich repeat receptor-like protein kinase Os06g0198900 protein (Putative receptor-like protein kinase 3) (cDNA clone:J023092F04, full insert sequence) Q69K60 Q69K60_ORYSJ Os06g0198900 Os06g0198900 B1172G12.20 OSNPB_060198900 ENOG411DR9H AVT6A,AVT6B Q9LI61,F4KBM7 AVT6A_ARATH,AVT6B_ARATH Amino acid transporter AVT6A (AtAvt6A),Amino acid transporter AVT6B (AtAvt6B) 49517,49678 Amino acid transporter AVT6A (AtAvt6A),Amino acid transporter AVT6B (AtAvt6B) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732] locus:2102926;,locus:2166615; AT3G30390,AT5G38820 amino acid transporter NA NA NA NA NA NA NA ENOG411DR9K RECQL1,RECQI1 Q9FT74,A0A1I9LR97 RQL1_ARATH,A0A1I9LR97_ARATH ATP-dependent DNA helicase Q-like 1 (EC 3.6.4.12) (RecQ-like protein 1) (AtRecQ1) (AtRecQl1),RECQ helicase l1 FUNCTION: 3'-5' DNA helicase that may play a role in the repair of DNA. {ECO:0000250}. 3.6.4.12 68501,58969 ATP-dependent DNA helicase Q-like 1 (EC 3.6.4.12) (RecQ-like protein 1) (AtRecQ1) (AtRecQl1),RECQ helicase l1 chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; metal ion binding [GO:0046872]; cellular response to cold [GO:0070417]; cellular response to water deprivation [GO:0042631]; double-strand break repair via homologous recombination [GO:0000724],ATP binding [GO:0005524]; ATP-dependent helicase activity [GO:0008026]; nucleic acid binding [GO:0003676]; DNA recombination [GO:0006310] TISSUE SPECIFICITY: Mostly expressed in shoots, flowers, siliques and seeds, and, to a lower extent, in roots, seedlings, leaves, shoots, shoot apical mersitem, and inflorescences. {ECO:0000269|PubMed:11058127, ECO:0000269|PubMed:12856935}. locus:2074429; AT3G05740 ATP-dependent DNA helicase ATP-dependent DNA helicase (EC 3.6.4.12) Q2QZT4 Q2QZT4_ORYSJ LOC_Os11g44910 Os11g0672700 OsJ_00135 OSNPB_110672700 ENOG411DR9J PMS1 Q941I6,A0A1P8B7A4,A0A1P8B7A8,A0A1P8B7A7 PMS1_ARATH,A0A1P8B7A4_ARATH,A0A1P8B7A8_ARATH,A0A1P8B7A7_ARATH DNA mismatch repair protein PMS1 (Postmeiotic segregation protein 1) (Protein POSTMEIOTIC SEGREGATION 1),DNA mismatch repair protein DISRUPTION PHENOTYPE: Reduced fertility. Increase homeologous recombination frequency. {ECO:0000269|PubMed:19115045}. The mutant has shorter siliques and a great reduction in seed production compared to wild-type plants. A much higher proportion of pollen grains have a collapsed appearance in the mutant than in wild-type plants. A GUS-based reporter assay does not reveal any difference in the somatic homologous recombination frequency between wild type and mutant plants. However a similar assay shows that the mutants have a higher rate of homeologous somatic recombination than wild-type plants.,The mutant displays homeotic floral anomalies. Male and female gametophyte defective; Homozygotes are viable: Reduced fertility-F. Belzile-2009 FUNCTION: Required for DNA mismatch repair (MMR), correcting base-base mismatches and insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of the MutLalpha heterodimer that forms a ternary complex with the MutS heterodimers, which initially recognize the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in maintaining the genetic stability of simple sequence repeats and in the repair of heteroduplex sites present in meiotic recombination intermediates. Does not seem to be required for homologous somatic recombination. {ECO:0000269|PubMed:15604748, ECO:0000269|PubMed:19115045, ECO:0000269|PubMed:23184005}. R-ATH-5358565; 102684,91945,75714,86453 DNA mismatch repair protein PMS1 (Postmeiotic segregation protein 1) (Protein POSTMEIOTIC SEGREGATION 1),DNA mismatch repair protein MutLalpha complex [GO:0032389]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; mismatched DNA binding [GO:0030983]; single-stranded DNA binding [GO:0003697]; DNA recombination [GO:0006310]; fruit development [GO:0010154]; mismatch repair [GO:0006298]; pollen development [GO:0009555]; seed development [GO:0048316],mismatch repair complex [GO:0032300]; ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] TISSUE SPECIFICITY: Expressed at very low levels in mature leaves. Detected in rapidly dividing tissues. {ECO:0000269|PubMed:20571910, ECO:0000269|Ref.1}. locus:2133274; AT4G02460 mismatch repair Os02g0592300 protein (Putative PMS2 postmeiotic segregation increased 2),Os02g0592300 protein (Fragment) Q69L72,A0A0P0VL35 Q69L72_ORYSJ,A0A0P0VL35_ORYSJ Os02g0592300 OsJ_07338 OSJNBa0016G10.12 OSNPB_020592300,Os02g0592300 OSNPB_020592300 ENOG411DR9M MCA23.20 Q9FIJ5 Q9FIJ5_ARATH At5g47860/MCA23_20 (Gut esterase (DUF1350)) 47787 At5g47860/MCA23_20 (Gut esterase (DUF1350)) chloroplast [GO:0009507] locus:2160962; AT5G47860 Protein of unknown function (DUF1350) Os04g0405600 protein (cDNA clone:J013157C11, full insert sequence) B7EF30 B7EF30_ORYSJ Os04g0405600 OsJ_14693 OSNPB_040405600 ENOG411DS0Y F6'H2,F6'H1 Q9C899,Q9LHN8 F6H2_ARATH,F6H1_ARATH Feruloyl CoA ortho-hydroxylase 2 (EC 1.14.11.-),Feruloyl CoA ortho-hydroxylase 1 (EC 1.14.11.-) DISRUPTION PHENOTYPE: No effect on scopoletin and scopolin levels in the roots. {ECO:0000269|PubMed:18547395}.,DISRUPTION PHENOTYPE: No visible phenotype, but severe reductions in scopoletin and scopolin levels in the roots. {ECO:0000269|PubMed:18547395}. FUNCTION: 2-oxoglutarate (OG)- and Fe(II)-dependent dioxygenase (2OGD)involved in scopoletin biosynthesis. Converts feruloyl CoA into 6'-hydroxyferuloyl CoA but has no activity with ferulic acid, feruloylquinic acid, caffeic acid, caffeoyl CoA, p-coumaric acid, cinnamic acid, cinnamoyl CoA or benzoyl CoA. {ECO:0000269|PubMed:18547395}. ARA:AT1G55290-MONOMER;,ARA:AT3G13610-MONOMER;MetaCyc:AT3G13610-MONOMER; 1.14.11.- 40876,40671 Feruloyl CoA ortho-hydroxylase 2 (EC 1.14.11.-),Feruloyl CoA ortho-hydroxylase 1 (EC 1.14.11.-) dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872],dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; coumarin biosynthetic process [GO:0009805]; hydrogen peroxide-mediated programmed cell death [GO:0010421]; phenylpropanoid biosynthetic process [GO:0009699] TISSUE SPECIFICITY: Low expression in roots. {ECO:0000269|PubMed:18547395}.,TISSUE SPECIFICITY: Highly expressed in roots. {ECO:0000269|PubMed:18547395}. locus:2035671;,locus:2086789; AT1G55290,AT3G13610 2-oxoglutarate-iron(II)-dependent oxygenase NA NA NA NA NA NA NA ENOG411DR9N Q9LZE4 Q9LZE4_ARATH Phosphoadenosine phosphosulfate (PAPS) reductase family protein (Uncharacterized protein F12E4_190) ARA:AT5G03430-MONOMER; R-ATH-196843; 55380 Phosphoadenosine phosphosulfate (PAPS) reductase family protein (Uncharacterized protein F12E4_190) cytoplasm [GO:0005737]; FMN adenylyltransferase activity [GO:0003919]; FAD biosynthetic process [GO:0006747]; oxidation-reduction process [GO:0055114] locus:2831849; AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein Os01g0259600 protein A0A0P0V1F4 A0A0P0V1F4_ORYSJ Os01g0259600 OSNPB_010259600 ENOG411DR91 BPG2,F3H7.11 Q8W4I6,Q9ZSB8 BPG2_ARATH,Q9ZSB8_ARATH GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic (Protein BRZ-INSENSITIVE-PALE GREEN 2),F3H7.11 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Uncharacterized protein At4g10620) DISRUPTION PHENOTYPE: Chlorotic dwarf mutant pale green in bpg2-1 and bpg2-2 (PubMed:19919572, PubMed:19889879, PubMed:22526496). Reduced sensitivity in the light to chlorophyll accumulation promoted by brassinazole (Brz), a specific inhibitor of the biosynthesis of brassinosteroids (BRs), via the suppression of Brz-induced chloroplast protein accumulation. Decreased number of stacked grana thylakoids in chloroplast, but more starch grains, and more and larger plastoglobules. Abnormal accumulation of precursors of chloroplast 16S and 23S rRNA (PubMed:19919572). Reduced level of chlorophyll and carotenoid pigmentation in plastids leading to defective photosystem II and altered photosystem I functions (PubMed:22526496). {ECO:0000269|PubMed:19889879, ECO:0000269|PubMed:19919572, ECO:0000269|PubMed:22526496}. Has pale green cotyledons when grown in the presence of Brassinazole (Brz)an inhibitor of the biosynthesis of brassinosteroids. Pale green cotyledons; Resistant to brassinazole (inhibitor of brassinosteroid synthesis)-T. Nakano-2009 FUNCTION: Required for brassinosteroid- (BR) mediated post-transcriptional and translational regulation in the chloroplast, including accumulation of chloroplast rRNA (PubMed:19919572). Involved in chloroplast differentiation (PubMed:19919572, PubMed:22526496). {ECO:0000269|PubMed:19919572, ECO:0000269|PubMed:22526496}. ARA:GQT-470-MONOMER;,ARA:GQT-2476-MONOMER; 73087,66491 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic (Protein BRZ-INSENSITIVE-PALE GREEN 2),F3H7.11 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Uncharacterized protein At4g10620) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; rRNA binding [GO:0019843]; brassinosteroid mediated signaling pathway [GO:0009742]; chloroplast organization [GO:0009658]; chloroplast rRNA processing [GO:1901259]; developmental process [GO:0032502]; positive regulation of carotenoid biosynthetic process [GO:1904143]; positive regulation of chlorophyll biosynthetic process [GO:1902326]; regulation of transcription, DNA-templated [GO:0006355]; response to absence of light [GO:0009646]; response to brassinosteroid [GO:0009741]; response to light stimulus [GO:0009416]; response to salt stress [GO:0009651],mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome biogenesis [GO:0042254] TISSUE SPECIFICITY: Mostly expressed in stems, petioles, leaves and flowers and, at low levels, also in roots. {ECO:0000269|PubMed:19919572, ECO:0000269|PubMed:22526496}. locus:2082558;,locus:2139247; AT3G57180,AT4G10620 Inherit from KOG: nitric oxide associated 1 GTP-binding protein-like (Os09g0364500 protein) (cDNA, clone: J100031B16, full insert sequence),Os06g0498900 protein (Putative GTPase) (cDNA clone:J013041I23, full insert sequence) Q69NK1,Q656A4 Q69NK1_ORYSJ,Q656A4_ORYSJ Os09g0364500 OJ1001_G09.27 OSNPB_090364500 P0441A12.6,Os06g0498900 Os06g0498900 OsJ_21450 OSNPB_060498900 P0596H06.14 ENOG411DR90 Q9S825,Q9C8F1 IF5Z_ARATH,IF5Y_ARATH Probable eukaryotic translation initiation factor 5-2 (eIF-5 2),Probable eukaryotic translation initiation factor 5-1 (eIF-5 1) FUNCTION: Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]) (By similarity). {ECO:0000250}. R-ATH-72702; 48640,48622 Probable eukaryotic translation initiation factor 5-2 (eIF-5 2),Probable eukaryotic translation initiation factor 5-1 (eIF-5 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; GTP binding [GO:0005525]; translation initiation factor activity [GO:0003743],cytosol [GO:0005829]; GTP binding [GO:0005525]; translation initiation factor activity [GO:0003743] locus:2029416;,locus:2196376; AT1G77840,AT1G36730 eukaryotic translation initiation factor Os06g0698674 protein (Putative eukaryotic translation initiation factor 5) (cDNA, clone: J100063D05, full insert sequence),Os09g0326900 protein (Putative eukaryotic translation initiation factor 5) (cDNA clone:J013000L01, full insert sequence) (cDNA clone:J013116G06, full insert sequence),Os09g0326900 protein (Fragment) Q5Z4V2,Q6K2P9,A0A0P0XK49 Q5Z4V2_ORYSJ,Q6K2P9_ORYSJ,A0A0P0XK49_ORYSJ Os06g0698674 OsJ_22510 OSNPB_060698674 P0545E05.8,P0706E03.4-1 Os09g0326900 OsJ_28887 OSNPB_090326900,Os09g0326900 OSNPB_090326900 ENOG411DR93 PI4KB1,PI4KB2,PI-4KBETA1 Q9FMJ0,Q0WPX9,A0A1P8BC59 P4KB1_ARATH,P4KB2_ARATH,A0A1P8BC59_ARATH Phosphatidylinositol 4-kinase beta 1 (PI4-kinase beta 1) (PtdIns-4-kinase beta 1) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase beta1) (AtPI4Kbeta1) (PI-4Kbeta1),Phosphatidylinositol 4-kinase beta 2 (PI4-kinase beta 2) (PtdIns-4-kinase beta 2) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase beta2) (AtPI4Kbeta2) (PI-4Kbeta2),Phosphatidylinositol 4-OH kinase beta1 DISRUPTION PHENOTYPE: When associated with PI4KB2 disruption: aberrant root hair morphologies, and short and wavy pollen tubes. {ECO:0000269|PubMed:16567499, ECO:0000269|PubMed:19208902}.,DISRUPTION PHENOTYPE: When associated with PI4KB1 disruption: aberrant root hair morphologies, and short and wavy pollen tubes. {ECO:0000269|PubMed:16567499, ECO:0000269|PubMed:19208902}. aberrant root hair morphology FUNCTION: Acts on phosphatidylinositol (PtdIns) in the first committed step in the production of the second messenger inositol-1,4,5-trisphosphate. Necessary for proper organization of the trans-Golgi network (TGN) and post-Golgi secretion in root hairs. Together with PI4KB2, required during polarized root hair expansion and pollen tube elongation. Functions redundantly with PI4KB2 upstream of the cold response phosphoinositide-dependent phospholipase C (PI-PLC) pathway. {ECO:0000269|PubMed:10026194, ECO:0000269|PubMed:16567499, ECO:0000269|PubMed:19208902, ECO:0000269|PubMed:20603382, ECO:0000269|PubMed:21134079, ECO:0000269|PubMed:22318862}.,FUNCTION: Acts on phosphatidylinositol (PtdIns) in the first committed step in the production of the second messenger inositol-1,4,5-trisphosphate (By similarity). Necessary for proper organization of the trans-Golgi network (TGN) and post-Golgi secretion in root hairs. Together with PI4KB1, required during polarized root hair expansion and pollen tube elongation. Functions redundantly with PI4KB1 upstream of the cold response phosphoinositide-dependent phospholipase C (PI-PLC) pathway. {ECO:0000250, ECO:0000269|PubMed:16567499, ECO:0000269|PubMed:19208902, ECO:0000269|PubMed:21134079, ECO:0000269|PubMed:22318862}. ARA:AT5G64070-MONOMER;,ARA:AT5G09350-MONOMER; R-ATH-1660514; 2.7.1.67 126375,126242,101166 Phosphatidylinositol 4-kinase beta 1 (PI4-kinase beta 1) (PtdIns-4-kinase beta 1) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase beta1) (AtPI4Kbeta1) (PI-4Kbeta1),Phosphatidylinositol 4-kinase beta 2 (PI4-kinase beta 2) (PtdIns-4-kinase beta 2) (EC 2.7.1.67) (Phosphatidylinositol 4-OH kinase beta2) (AtPI4Kbeta2) (PI-4Kbeta2),Phosphatidylinositol 4-OH kinase beta1 cytoplasmic vesicle membrane [GO:0030659]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; root hair tip [GO:0035619]; 1-phosphatidylinositol 4-kinase activity [GO:0004430]; protein histidine kinase binding [GO:0043424]; Rab GTPase binding [GO:0017137]; phosphatidylinositol-mediated signaling [GO:0048015]; pollen tube growth [GO:0009860]; root hair cell tip growth [GO:0048768],cytoplasm [GO:0005737]; cytoplasmic vesicle membrane [GO:0030659]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; 1-phosphatidylinositol 4-kinase activity [GO:0004430]; phosphatidylinositol-mediated signaling [GO:0048015]; pollen tube growth [GO:0009860]; root hair cell tip growth [GO:0048768],intracellular [GO:0005622]; kinase activity [GO:0016301]; phosphatidylinositol phosphorylation [GO:0046854]; phosphatidylinositol-mediated signaling [GO:0048015] TISSUE SPECIFICITY: Expressed constitutively in leaves, roots, flowers, and stems. {ECO:0000269|PubMed:10026194}. locus:2164401;,locus:2184782; AT5G64070,AT5G09350 phosphatidylinositol 4-kinase Os11g0209700 protein (Fragment) A0A0P0XZW3 A0A0P0XZW3_ORYSJ Os11g0209700 OSNPB_110209700 ENOG411DR92 ABA2 Q9C826 ABA2_ARATH Xanthoxin dehydrogenase (EC 1.1.1.288) (Protein GLUCOSE INSENSITIVE 1) (Protein IMPAIRED SUCROSE INDUCTION 4) (Protein SALOBRENO 3) (Protein SALT RESISTANT 1) (Protein SUGAR INSENSITIVE 4) (Short-chain alcohol dehydrogenase ABA2) (Short-chain dehydrogenase reductase 1) (AtSDR1) (Xanthoxin oxidase) Unstressed leaves contain ~20 to 25% of wild type levels of ABA.,Can germinate and perform early growth under high-salt concentration that are inhibitory for wild type seeds.,Mutant plants are more sensitive to salt stress at later stages of development and are killed by prolonged exposure to 100 mM NaCl or 200 mM mannitol whereas wild type plants survive.,Seeds are more tolerant of osmotic stress at germination than wild type seedlings.,In contrast to wild type ABA levels did not increased rapidly after infection with the oomycete Pythium irregulare.,Increased susceptibility to P. irregulare compared with the wild type.,Phenotype not described.,Adult plants wilt under dessicating conditions.,After bolting the wilty phenotype became evident in the shoot apex cauline leaves and immature siliques of this mutant. This phenotype was partially restored by application of 10 μM ABA to rosette leaves.,Approximately 40% of mutant seeds germinate after far red/red light treatment whereas wild type germination was suppressed almost entirely.,Endogenous ABA levels in fresh and dehydrated tissues of the mutant were about 23% and 2.4% respectively of those of the wild type plants.,Endogenous levels of 12 amino acids were at least 2-fold greater in wild-type than in the mutant plants after 18 h dehydration. Amino acids that exhibited marked increases were leucine (152-fold) isoleucine (95-fold) proline (83-fold) and valine (25-fold). Aspartic acid was the only amino acid which showed a significant reduction in wild-type plants during dehydration. In dehydrated tissues of the mutant 9 amino acids increased more than 2-fold during dehydration however the increases in the mutant plants were less pronounced than those in wild-type plants. Glycine and alanine showed greater increases in comparison to wild type whereas the levels of glutamic acid and aspartic acid showed a reduction in the mutant during dehydration.,Free amino acid levels in fresh tissues of the mutant plants at 30 DAI were similar to those in wild type however the level of proline in the mutant plants was 4-fold higher than that in wild type.,Germination of the mutant seeds after irradiation with far red light is inhibited by paclobutrazol an inhibitor of GA biosynthesis.,Mutant showed a similar sensitivity to 25 mM trehalose as wild type (inhibition of root growth).,Seeds have a reduced dormancy.,Several GA biosynthesis genes are upregulated in the mutant compared to wild type during seed development.,The mutant embryos are morphologically normal although mature embryos are more yellow compared to white wild-type embryos.,The mutant has smaller rosette leaves and mature plants are not yellowish as has been reported for abal mutants.,Under the reported growth conditions approximately 10% of the dark germinated seedlings of the mutant produced true leaves. The dark germinated seedlings of the mutant did not show further growth even after a prolonged period of darkness. Reduced seed dormancy; Severe wilting; Low ABA levels; Resistant to salt-P. Rodriguez-2002 FUNCTION: Involved in the biosynthesis of abscisic acid. {ECO:0000269|PubMed:12172025, ECO:0000269|PubMed:12417697, ECO:0000269|PubMed:9159947}. MISCELLANEOUS: The biological substrate is probably 2-cis,4-trans-xanthoxin. ARA:AT1G52340-MONOMER;MetaCyc:AT1G52340-MONOMER; R-ATH-77111; 1.1.1.288; 1.1.1.288 30272 Xanthoxin dehydrogenase (EC 1.1.1.288) (Protein GLUCOSE INSENSITIVE 1) (Protein IMPAIRED SUCROSE INDUCTION 4) (Protein SALOBRENO 3) (Protein SALT RESISTANT 1) (Protein SUGAR INSENSITIVE 4) (Short-chain alcohol dehydrogenase ABA2) (Short-chain dehydrogenase reductase 1) (AtSDR1) (Xanthoxin oxidase) cytosol [GO:0005829]; alcohol dehydrogenase (NAD) activity [GO:0004022]; xanthoxin dehydrogenase activity [GO:0010301]; abscisic acid biosynthetic process [GO:0009688]; proline biosynthetic process [GO:0006561]; regulation of abscisic acid biosynthetic process [GO:0010115]; response to fructose [GO:0009750]; response to heat [GO:0009408]; response to water deprivation [GO:0009414]; sugar mediated signaling pathway [GO:0010182] TISSUE SPECIFICITY: Predominantly in roots and stems, and at lower levels in leaves and seeds. {ECO:0000269|PubMed:12172025, ECO:0000269|PubMed:12417697}. locus:2018149; AT1G52340 xanthoxin Os03g0810800 protein (Putative alcohol dehydrogenase) (Putative short chain alcohol dehydrogenase) (Sex determination protein tasselseed 2, putative, expressed) (cDNA clone:J023042C15, full insert sequence) Q7XZH5 Q7XZH5_ORYSJ OSJNBa0028F23.5 LOC_Os03g59610 Os03g0810800 OsJ_13064 OSJNBb0033J23.3 OSNPB_030810800 ENOG411DR95 A0A1I9LMI0,F4JU71,Q9LRQ0,F4J488,A0A1I9LMH9 A0A1I9LMI0_ARATH,F4JU71_ARATH,Q9LRQ0_ARATH,F4J488_ARATH,A0A1I9LMH9_ARATH Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 59323,117633,62436,51390,44662 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein hydrolase activity [GO:0016787],phosphoprotein phosphatase activity [GO:0004721] locus:2120883;,locus:2091823; AT4G26190,AT3G29760 NLI interacting factor-like phosphatase Os07g0109300 protein (Fragment) A0A0P0X1H8 A0A0P0X1H8_ORYSJ Os07g0109300 OSNPB_070109300 ENOG411DR94 MJB21.5 Q9FMZ6 Q9FMZ6_ARATH At5g42680 26721 At5g42680 locus:2165477; AT5G42680 Protein of unknown function DUF617 Os09g0463600 protein (cDNA clone:J023076J04, full insert sequence) (cDNA clone:J023139I23, full insert sequence) Q69MD4 Q69MD4_ORYSJ Os09g0463600 OsJ_29664 OSJNBb0019B14.18-1 OSNPB_090463600 ENOG411DR97 SCPL29 Q949Q7 SCP29_ARATH Serine carboxypeptidase-like 29 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 53056 Serine carboxypeptidase-like 29 (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:15908604}. locus:2126644; AT4G30810 Serine Carboxypeptidase Carboxypeptidase (EC 3.4.16.-) Q5SMV5 Q5SMV5_ORYSJ Os06g0186400 OsJ_20382 OSNPB_060186400 P0470C02.1 P0568D10.12 ENOG411DR96 Q9SKS7 Q9SKS7_ARATH AT2G20930 protein (At2g20930) (Expressed protein) (SNARE-like superfamily protein) R-ATH-204005;R-ATH-8876198; 15679 AT2G20930 protein (At2g20930) (Expressed protein) (SNARE-like superfamily protein) cytoplasm [GO:0005737]; ER to Golgi vesicle-mediated transport [GO:0006888] locus:2051457; AT2G20930 Trafficking protein particle complex subunit Os09g0541500 protein (cDNA clone:001-003-G05, full insert sequence) Q651C7 Q651C7_ORYSJ Os09g0541500 Os09g0541500 B1274F11.37 OsJ_30184 OSNPB_090541500 ENOG411DR99 LAZ1 Q94CA0,F4JTN2,A0A1P8AMV5 LAZH1_ARATH,LAZ1_ARATH,A0A1P8AMV5_ARATH Protein LAZ1 homolog 1 (Lazarus1 homolog 1),Protein LAZ1 (Lazarus1),Organic solute transporter ostalpha protein (DUF300) DISRUPTION PHENOTYPE: Suppresses acd11-dependent cell death. Laz1 acd11 double mutants survive throughout development to flower and set seeds, in contrast to the fate of acd11. {ECO:0000269|PubMed:20830211}. FUNCTION: Required for programmed cell death (PCD) associated with hypersensitive response (HR). Involved both in the induction of EDS1/PAD4 mediated HR and in accelerated cell death in the acd11 mutant. Not required for HR induction elicited through pathways exclusively dependent on CC-NB-LRR resistance proteins. {ECO:0000269|PubMed:20830211}. 55378,54711,40920 Protein LAZ1 homolog 1 (Lazarus1 homolog 1),Protein LAZ1 (Lazarus1),Organic solute transporter ostalpha protein (DUF300) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transport [GO:0006810],cytosol [GO:0005829]; endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; plant-type hypersensitive response [GO:0009626]; programmed cell death [GO:0012501]; transport [GO:0006810],integral component of membrane [GO:0016021] locus:2196005;,locus:2121763; AT1G77220,AT4G38360 transmembrane protein 184C-like Os05g0516900 protein (cDNA clone:J023025A15, full insert sequence),MAP kinase activating protein-like (Os06g0726600 protein),Os06g0726600 protein (Fragment) Q75II8,Q5Z7P9,A0A0P0X162 Q75II8_ORYSJ,Q5Z7P9_ORYSJ,A0A0P0X162_ORYSJ Os05g0516900 B1130G10.14 OsJ_19208 OSNPB_050516900,P0017G10.9-1 Os06g0726600 OsJ_22717 OSNPB_060726600,Os06g0726600 OSNPB_060726600 ENOG411DR98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter activity Aquaporin PIP2-4 (OsPIP2;4) (Plasma membrane intrinsic protein 2-4),Aquaporin PIP2-5 (OsPIP2;5) (Plasma membrane intrinsic protein 2-5),Os07g0448200 protein (Fragment) Q8GRT8,Q8GRI8,A0A0P0X5C6 PIP24_ORYSJ,PIP25_ORYSJ,A0A0P0X5C6_ORYSJ PIP2-4 Os07g0448100 LOC_Os07g26630 OJ1047_A06.105 P0475E07.131,PIP2-5 Os07g0448400 LOC_Os07g26660 OJ1047_A06.108-1 OsJ_023143 P0475E07.134-1,Os07g0448200 OSNPB_070448200 FUNCTION: Water channel required to facilitate the transport of water across cell membrane. May play a role in root water uptake. {ECO:0000269|PubMed:16033806}. ENOG411DS0C PCMP-E92 Q9LHN5 PP242_ARATH Putative pentatricopeptide repeat-containing protein At3g18840 76416 Putative pentatricopeptide repeat-containing protein At3g18840 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2087911; AT3G18840 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DS0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411DY12 CPX2,CPX1 Q93Z96,Q9LR75 HEM62_ARATH,HEM61_ARATH Coproporphyrinogen-III oxidase 2, chloroplastic (AtCPO-II) (Coprogen oxidase) (Coproporphyrinogenase) (EC 1.3.3.3),Coproporphyrinogen-III oxidase 1, chloroplastic (AtCPO-I) (Coprogen oxidase) (Coproporphyrinogenase) (EC 1.3.3.3) (Protein LESION INITIATION 2) DISRUPTION PHENOTYPE: Spontaneous formation of necrotic leaf lesions. {ECO:0000269|PubMed:11489187}. Plant have pale green leaves and develop lesions on the young leaves. Lesions begin as a small spot or stripe of collapsed tissue usually appearing in the middle part of the young leaves. FUNCTION: Key enzyme in heme biosynthesis. Catalyzes the oxidative decarboxylation of propionic acid side chains of rings A and B of coproporphyrinogen III (By similarity). {ECO:0000250}.,FUNCTION: Key enzyme in heme biosynthesis. Catalyzes the oxidative decarboxylation of propionic acid side chains of rings A and B of coproporphyrinogen III. {ECO:0000269|PubMed:11489187, ECO:0000269|Ref.2}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrinogen-IX from coproporphyrinogen-III (O2 route): step 1/1.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT1G03475-MONOMER;MetaCyc:AT1G03475-MONOMER; R-ATH-189451; 1.3.3.3; 1.3.3.3 26134,43796 Coproporphyrinogen-III oxidase 2, chloroplastic (AtCPO-II) (Coprogen oxidase) (Coproporphyrinogenase) (EC 1.3.3.3),Coproporphyrinogen-III oxidase 1, chloroplastic (AtCPO-I) (Coprogen oxidase) (Coproporphyrinogenase) (EC 1.3.3.3) (Protein LESION INITIATION 2) chloroplast stroma [GO:0009570]; coproporphyrinogen oxidase activity [GO:0004109]; chlorophyll biosynthetic process [GO:0015995]; protoporphyrinogen IX biosynthetic process [GO:0006782],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; coproporphyrinogen oxidase activity [GO:0004109]; protein homodimerization activity [GO:0042803]; chlorophyll biosynthetic process [GO:0015995]; protoporphyrinogen IX biosynthetic process [GO:0006782]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Expressed in cotyledons, leaves and roots. {ECO:0000269|Ref.2}. locus:505006431;,locus:2825062; AT4G03205,AT1G03475 Key enzyme in heme biosynthesis. Catalyzes the oxidative decarboxylation of propionic acid side chains of rings A and B of coproporphyrinogen III (By similarity) Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic (Coprogen oxidase) (Coproporphyrinogenase) (EC 1.3.3.3),Os04g0610800 protein Q7XPL2,A0A0P0WF16 HEM6_ORYSJ,A0A0P0WF16_ORYSJ CPX Os04g0610800 LOC_Os04g52130 OSJNBa0085I10.14,Os04g0610800 OSNPB_040610800 FUNCTION: Involved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (By similarity). {ECO:0000250}. ENOG411DY13 OSB4 Q9FYJ2 OSB4_ARATH Protein OSB4, chloroplastic (Organellar single-stranded DNA-binding protein 4) FUNCTION: Binds single-stranded DNA. {ECO:0000250}. 40627 Protein OSB4, chloroplastic (Organellar single-stranded DNA-binding protein 4) chloroplast [GO:0009507]; single-stranded DNA binding [GO:0003697] locus:2015721; AT1G31010 single-stranded dna binding protein Os01g0949060 protein Q5JKX9 Q5JKX9_ORYSJ B1147A04.4-2 Os01g0949060 OSNPB_010949060 ENOG411DY16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain Os01g0634900 protein A0A0P0V5M1 A0A0P0V5M1_ORYSJ Os01g0634900 OSNPB_010634900 ENOG411DY15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Choline/ethanolamine kinase Os01g0296100 protein (cDNA clone:J013036B06, full insert sequence),Os01g0296100 protein Q94IZ2,A0A0P0V1Q9 Q94IZ2_ORYSJ,A0A0P0V1Q9_ORYSJ Os01g0296100 OsJ_01412 OSJNBa0025P13.2-1 OSNPB_010296100,Os01g0296100 OSNPB_010296100 ENOG411DUAY SFH13 Q501H5,F4I1W0 SFH13_ARATH,F4I1W0_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 (Protein SEC FOURTEEN HOMOLOGS 13) (AtSFH13),Sec14p-like phosphatidylinositol transfer family protein FUNCTION: Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}. 72034,71402 Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 (Protein SEC FOURTEEN HOMOLOGS 13) (AtSFH13),Sec14p-like phosphatidylinositol transfer family protein Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; protein transport [GO:0015031] locus:2020492; AT1G55690 SEC14 cytosolic factor Os08g0341700 protein (Phosphatidylinositol transfer-like),Os02g0721800 protein (Putative phosphatidylinositol transfer),Os08g0341700 protein (Fragment) Q6ZCZ7,Q6Z661,A0A0P0XEW9 Q6ZCZ7_ORYSJ,Q6Z661_ORYSJ,A0A0P0XEW9_ORYSJ Os08g0341700 Os08g0341700 OJ1790_D02.16 OSNPB_080341700,Os02g0721800 OSNPB_020721800 P0654B04.19,Os08g0341700 OSNPB_080341700 ENOG411DY1J Q1PFH7,A0A1P8AST8,A0A1P8ASR0 PPR89_ARATH,A0A1P8AST8_ARATH,A0A1P8ASR0_ARATH Pentatricopeptide repeat-containing protein At1g62350,Pentatricopeptide repeat (PPR) superfamily protein 23287,29715,17264 Pentatricopeptide repeat-containing protein At1g62350,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2027149; AT1G62350 Pentatricopeptide repeat-containing protein Os03g0297700 protein (Fragment) A0A0P0VX54 A0A0P0VX54_ORYSJ Os03g0297700 OSNPB_030297700 ENOG411DY1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transmembrane transport Probable metal-nicotianamine transporter YSL17 (Protein YELLOW STRIPE LIKE 17) (OsYSL17),Probable metal-nicotianamine transporter YSL7 (Protein YELLOW STRIPE LIKE 7) (OsYSL7),Os08g0280300 protein,Os02g0116300 protein (Fragment) Q6ZCX1,Q6ZGM7,A0A0P0XDV4,A0A0P0VDX3 YSL17_ORYSJ,YSL7_ORYSJ,A0A0P0XDV4_ORYSJ,A0A0P0VDX3_ORYSJ YSL17 Os08g0280300 LOC_Os08g17830 OJ1003_E05.7 P0026A08.33,YSL7 Os02g0116300 LOC_Os02g02450 OJ1442_E05.16 OsJ_004978,Os08g0280300 OSNPB_080280300,Os02g0116300 OSNPB_020116300 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DY1F RSH1 F4JHA2,A0A1P8B8U7,F4JHA4 RSH1C_ARATH,A0A1P8B8U7_ARATH,F4JHA4_ARATH Putative GTP diphosphokinase RSH1, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 1) (AtRSH1) (ppGpp synthetase RSH1),RELA/SPOT homolog 1 FUNCTION: May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses (By similarity). Unable to functionally complement E.coli relA mutants. {ECO:0000250, ECO:0000269|PubMed:18535838}. MISCELLANEOUS: In the ecotype Landsberg erecta, RSH1 (AC P0DKG8) has been shown to interact with RPP5 (AC O04264). 2.7.6.5 98690,96829,91647 Putative GTP diphosphokinase RSH1, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 1) (AtRSH1) (ppGpp synthetase RSH1),RELA/SPOT homolog 1 chloroplast [GO:0009507]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; GTP diphosphokinase activity [GO:0008728]; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [GO:0008893]; kinase activity [GO:0016301]; guanosine tetraphosphate metabolic process [GO:0015969]; leaf senescence [GO:0010150]; photosynthesis [GO:0015979]; response to wounding [GO:0009611],guanosine tetraphosphate metabolic process [GO:0015969] TISSUE SPECIFICITY: Expressed in hypocotyls, shoots, cotyledons, rosette leaves, sepals and pistils. {ECO:0000269|PubMed:18535838}. locus:2137869; AT4G02260 GTP pyrophosphokinase-like Putative GTP diphosphokinase RSH1, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 1) (Os-RelA1) (OsRSH1) (ppGpp synthetase RSH1) Q9AYT5 RSH1_ORYSJ RSH1 Os03g0340900 LOC_Os03g22160 OsJ_10786 FUNCTION: May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses. {ECO:0000250}. ENOG411DY1E F4JFJ3 Y3206_ARATH ATP-dependent DNA helicase At3g02060, chloroplastic (EC 3.6.4.12) 3.6.4.12 93929 ATP-dependent DNA helicase At3g02060, chloroplastic (EC 3.6.4.12) chloroplast [GO:0009507]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386] locus:2078673; AT3G02060 Pfam:CarD_TRCF Os11g0533100 protein A0A0P0Y3A0 A0A0P0Y3A0_ORYSJ Os11g0533100 OSNPB_110533100 ENOG411DY1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411DY1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0656300 protein A3BMZ6 A3BMZ6_ORYSJ Os07g0656300 OsJ_25417 OSNPB_070656300 ENOG411DY1P SAC3A F4IUY8 SAC3A_ARATH SAC3 family protein A DISRUPTION PHENOTYPE: No visible phenotype. Sac3a, sac3b and sac3c triple mutants show no visible phenotype. {ECO:0000269|PubMed:19843313}. FUNCTION: Component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (PubMed:19843313). {ECO:0000269|PubMed:19843313}. 111260 SAC3 family protein A nucleus [GO:0005634] locus:2056058; AT2G39340 SAC3 GANP family protein Os05g0462600 protein,Os01g0836400 protein,Os05g0462600 protein (Fragment) C7J2C7,Q0JHY3,A0A0P0WNF6 C7J2C7_ORYSJ,Q0JHY3_ORYSJ,A0A0P0WNF6_ORYSJ Os05g0462600 Os05g0462600 OSNPB_050462600,Os01g0836400 Os01g0836400 OSNPB_010836400,Os05g0462600 OSNPB_050462600 ENOG411E9CJ BHLH54,BHLH139 Q8LEG1,Q3E7L7 BH054_ARATH,BH139_ARATH Transcription factor bHLH54 (Basic helix-loop-helix protein 54) (AtbHLH54) (bHLH 54) (Transcription factor EN 114) (bHLH transcription factor bHLH054),Transcription factor bHLH139 (Basic helix-loop-helix protein 139) (AtbHLH139) (bHLH 139) (Transcription factor EN 116) (bHLH transcription factor bHLH139) 29160,25076 Transcription factor bHLH54 (Basic helix-loop-helix protein 54) (AtbHLH54) (bHLH 54) (Transcription factor EN 114) (bHLH transcription factor bHLH054),Transcription factor bHLH139 (Basic helix-loop-helix protein 139) (AtbHLH139) (bHLH 139) (Transcription factor EN 116) (bHLH transcription factor bHLH139) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; cell growth [GO:0016049]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; root hair initiation [GO:0048766]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and flowers. {ECO:0000269|PubMed:12679534}. locus:2199221;,locus:504954900; AT1G27740,AT5G43175 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E6DH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWZ9 LRX6 Q9LUI1 LRX6_ARATH Leucine-rich repeat extensin-like protein 6 (AtLRX6) (LRR/EXTENSIN6) (Cell wall hydroxyproline-rich glycoprotein) FUNCTION: Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. {ECO:0000250}. 52335 Leucine-rich repeat extensin-like protein 6 (AtLRX6) (LRR/EXTENSIN6) (Cell wall hydroxyproline-rich glycoprotein) cell wall [GO:0005618]; extracellular region [GO:0005576]; structural constituent of cell wall [GO:0005199]; cell wall organization [GO:0071555] DEVELOPMENTAL STAGE: Observed in emerging secondary roots. {ECO:0000269|PubMed:12644681}. TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12644681}. locus:2094389; AT3G22800 leucine-rich repeat extensin-like protein Leucine Rich Repeat family protein, expressed (Os03g0795300 protein) (Putative leucine-rich receptor-like protein kinase) (cDNA clone:002-105-A10, full insert sequence),Extensin-like protein (Os07g0176400 protein) (Os07g0176500 protein) Q6F383,Q6ZEZ7 Q6F383_ORYSJ,Q6ZEZ7_ORYSJ OSJNBb0021G19.14 LOC_Os03g58110 Os03g0795300 OSNPB_030795300,Os07g0176500 Os07g0176400 OSNPB_070176500 P0534H07.20 ENOG411EJSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3458) NA NA NA NA NA NA NA ENOG411EJSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA-binding protein involved in single-strand DNA break repair double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites or when DNA ligases attempt to repair non- ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini resulting in the production of 5'-phosphate termini that can be efficiently rejoined NA NA NA NA NA NA NA ENOG411EJSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0803800 protein (Fragment) Q0DML1 Q0DML1_ORYSJ Os03g0803800 OSNPB_030803800 ENOG411DZXJ MORF9 Q9LPZ1 MORF9_ARATH Multiple organellar RNA editing factor 9, chloroplastic (RNA editing-interacting protein 9) DISRUPTION PHENOTYPE: White leaves with green islands, giving a variegated appearance. Mutant plants can grow autotrophically on soil. {ECO:0000269|PubMed:22411807}. FUNCTION: Involved in organellar RNA editing. Required for the processing of multiple editing sites in plastids. {ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. 26201 Multiple organellar RNA editing factor 9, chloroplastic (RNA editing-interacting protein 9) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast RNA modification [GO:1900865]; mRNA processing [GO:0006397] locus:2200131; AT1G11430 DAG protein Os08g0139100 protein (Putative DAG protein) (cDNA clone:001-038-B10, full insert sequence) (cDNA clone:006-306-H03, full insert sequence) Q6ZKI1 Q6ZKI1_ORYSJ Os08g0139100 Os08g0139100 OJ1119_D01.18 OsJ_25987 OSNPB_080139100 ENOG411DZXH Q9SZR6 Q9SZR6_ARATH Transmembrane protein (Uncharacterized protein AT4g29960) (Uncharacterized protein F27B13.200) 31902 Transmembrane protein (Uncharacterized protein AT4g29960) (Uncharacterized protein F27B13.200) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ERAD pathway [GO:0036503] locus:2123889; AT4G29960 Inherit from euNOG: expressed protein OSJNBa0035M09.15 protein (Os04g0606800 protein) (cDNA clone:J023134C17, full insert sequence) Q7XS49 Q7XS49_ORYSJ Os04g0606800 OsJ_16080 OSJNBa0035M09.15 OSNPB_040606800 ENOG411DTUQ VHA-C Q9SDS7 VATC_ARATH V-type proton ATPase subunit C (V-ATPase subunit C) (Vacuolar H(+)-ATPase subunit C) (Vacuolar proton pump subunit C) Abnormal seedling growth in the dark; Insensitive to brassinosteroids-J. Chory-1999 FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. R-ATH-1222556;R-ATH-77387;R-ATH-917977; 42619 V-type proton ATPase subunit C (V-ATPase subunit C) (Vacuolar H(+)-ATPase subunit C) (Vacuolar proton pump subunit C) chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase, V1 domain [GO:0000221]; vacuole [GO:0005773]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; ATP hydrolysis coupled proton transport [GO:0015991]; unidimensional cell growth [GO:0009826] locus:2010386; AT1G12840 V-type proton ATPase subunit V-type proton ATPase subunit C Q6L4R5 Q6L4R5_ORYSJ Os05g0593100 Os05g0593100 OsJ_19763 OSNPB_050593100 P0663C08.13 FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. {ECO:0000256|RuleBase:RU364010}. ENOG411DTUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os02g0655200 protein (Fragment) A0A0N7KFT2 A0A0N7KFT2_ORYSJ Os02g0655200 OSNPB_020655200 ENOG411DTUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA myb family transcription factor APL-like Os05g0491500 protein (cDNA clone:001-043-B07, full insert sequence) (cDNA clone:J023012H08, full insert sequence) Q6F335 Q6F335_ORYSJ Os05g0491500 Os05g0491500 OSJNBa0088I06.12 OSNPB_050491500 ENOG411DTUB MPF21.12 Q1WWI8,F4K7J0 Q1WWI8_ARATH,F4K7J0_ARATH At5g50110 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 22775,32491 At5g50110 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; rRNA methyltransferase activity [GO:0008649],cytosol [GO:0005829]; rRNA (guanine-N7-)-methyltransferase activity [GO:0070043]; rRNA (guanine-N7)-methylation [GO:0070476] locus:2170051; AT5G50110 ribosomal RNA small subunit methyltransferase Methyltransferase-related-like (Os06g0239000 protein) Q67VB2 Q67VB2_ORYSJ Os06g0239000 OSJNBa0052G07.16 OSJNBa0068B06.25 OSNPB_060239000 ENOG411DTUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inorganic phosphate transporter Inorganic phosphate transporter 1-11 (OsPT11) (OsPht1;11) (H(+)/Pi cotransporter) Q94DB8 PT111_ORYSJ PHT1-11 PT11 Os01g0657100 LOC_Os01g46860 OsJ_002785 P0694A04.21 FUNCTION: Symbiosis-specific regulated inorganic phosphate (Pi) transporter. Probably involved in symbiosis-mediated Pi uptake in roots colonized by myccorhizal fungi. {ECO:0000269|PubMed:12271140}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. ENOG411EI27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S25 ribosomal protein NA NA NA NA NA NA NA ENOG411DWQ0 MED31 Q8VYB1 MED31_ARATH Mediator of RNA polymerase II transcription subunit 31 (Mediator complex subunit 31) (Mediator complex subunit SOH1) FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 22819 Mediator of RNA polymerase II transcription subunit 31 (Mediator complex subunit 31) (Mediator complex subunit SOH1) core mediator complex [GO:0070847]; mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription coactivator activity [GO:0003713]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] locus:2147675; AT5G19910 Mediator of RNA polymerase II transcription subunit Mediator of RNA polymerase II transcription subunit 31 Q336R8,Q7XIE0 Q336R8_ORYSJ,Q7XIE0_ORYSJ Os10g0564100 LOC_Os10g41450 Os10g0564100 OSJNBa0027P10.17 OSNPB_100564100,P0039H02.106 P0428D12.126 Os07g0164600 OSNPB_070164600 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364129}. ENOG411DWQ1 MVP7.5 Q94AH2 Q94AH2_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At5g64730) 33066 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At5g64730) Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2176085; AT5G64730 WD repeat domain-containing protein Os02g0543400 protein (Putative WD repeat domain 5B) (cDNA clone:001-113-D11, full insert sequence) Q6ESX9 Q6ESX9_ORYSJ Os02g0543400 OsJ_07069 OSNPB_020543400 P0472F10.24 ENOG411DWQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os05g0515200 protein (Putative cytochrome P450),Os06g0267400 protein Q68Y41,A0A0P0WUZ0 Q68Y41_ORYSJ,A0A0P0WUZ0_ORYSJ Os05g0515200 OsJ_19193 OSNPB_050515200 P0022D06.13,Os06g0267400 OSNPB_060267400 ENOG411DWQ3 Q9C6S8 Q9C6S8_ARATH AT1G31870 protein (At1g31870) (Pre-mRNA-splicing factor of RES complex protein) (Uncharacterized protein F5M6.12) 64659 AT1G31870 protein (At1g31870) (Pre-mRNA-splicing factor of RES complex protein) (Uncharacterized protein F5M6.12) cytosol [GO:0005829]; nucleus [GO:0005634] locus:2034501; AT1G31870 Pre-mRNA-splicing factor of RES complex Os08g0178300 protein Q6ZKE8,Q6ZKE7 Q6ZKE8_ORYSJ,Q6ZKE7_ORYSJ OJ1120_C08.24-1 Os08g0178300 OSNPB_080178300,OJ1120_C08.24-2 Os08g0178300 OSNPB_080178300 ENOG411DWQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q69X83,Q69X81,Q69KM1 Q69X83_ORYSJ,Q69X81_ORYSJ,Q69KM1_ORYSJ Os06g0590700 OSNPB_060590700 P0633E08.26,P0633E08.29 Os06g0590800 OSNPB_060590800,Os06g0187500 OsJ_20393 OSJNBb0005A05.10 OSNPB_060187500 P0470C02.21 ENOG411DWQ5 rpoB P50546 RPOB_ARATH DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 2.7.7.6 121059 DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) chloroplast [GO:0009507]; DNA-directed RNA polymerase complex [GO:0000428]; nucleoid [GO:0009295]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; ribonucleoside binding [GO:0032549]; DNA-templated transcription, elongation [GO:0006354] locus:504954643; ATCG00190 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) P0C503 RPOB_ORYSJ rpoB LOC_Osp1g00240 Nip036 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000255|HAMAP-Rule:MF_01321}. ENOG411DWQ6 PUB20,PUB21,CMPG1 Q9C8D1,Q5PNY6,F4ID86 PUB20_ARATH,PUB21_ARATH,F4ID86_ARATH U-box domain-containing protein 20 (EC 2.3.2.27) (Plant U-box protein 20) (RING-type E3 ubiquitin transferase PUB20),U-box domain-containing protein 21 (EC 2.3.2.27) (Plant U-box protein 21) (RING-type E3 ubiquitin transferase PUB21),RING-type E3 ubiquitin transferase (EC 2.3.2.27) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 48212,48725,46409 U-box domain-containing protein 20 (EC 2.3.2.27) (Plant U-box protein 20) (RING-type E3 ubiquitin transferase PUB20),U-box domain-containing protein 21 (EC 2.3.2.27) (Plant U-box protein 21) (RING-type E3 ubiquitin transferase PUB21),RING-type E3 ubiquitin transferase (EC 2.3.2.27) ubiquitin-protein transferase activity [GO:0004842]; response to chitin [GO:0010200],ubiquitin-protein transferase activity [GO:0004842] locus:2013850;,locus:2169861; AT1G66160,AT5G37490 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27),Os01g0787300 protein Q10PB1,B7FA87,A0A0P0V972,A0A0P0WV49 Q10PB1_ORYSJ,B7FA87_ORYSJ,A0A0P0V972_ORYSJ,A0A0P0WV49_ORYSJ Os03g0240600 UPS LOC_Os03g13740 Os03g0240600 OSNPB_030240600,Os02g0738200 Os02g0738200 OSNPB_020738200,Os01g0787300 OSNPB_010787300,Os06g0248500 OSNPB_060248500 ENOG411DWQ7 EX2,EX1 Q94AT5,Q93YW0 EXEC2_ARATH,EXEC1_ARATH Protein EXECUTER 2, chloroplastic (AtEX2),Protein EXECUTER 1, chloroplastic (AtEX1) No visible phenotype.,Once they were transferred to the long day conditions (after being grown in constant light until they reached the rosette leaf stage and were ready to bolt) the mutant plants continued to grow similarly to wild type except that their growth was slightly reduced and their final height was ~80% of that of wild type.,Under continuous light the mutant plants grew equally well compared to wild type and finally reached the same height.,When mature plants grown under continuous light were shifted to the dark for 8 h free protochlorophyllide accumulated in the mutant to similar levels in rosette leaves and were 3- to 4-fold higher than in wild-type controls.,Once they were transferred to the long day conditions (after being grown in constant light until they reached the rosette leaf stage and were ready to bolt) the mutant plants stopped growing. FUNCTION: Together with EX1, enables higher plants to perceive singlet oxygen as a stress signal in plastid that activates a genetically determined nuclear stress response program which triggers a programmed cell death (PCD). This transfer of singlet oxygen-induced stress-related signals from the plastid to the nucleus that triggers genetically controlled PCD pathway is unique to photosynthetic eukaryotes and operates under mild stress conditions, impeding photosystem II (PSII) without causing photooxidative damage of the plant. {ECO:0000269|PubMed:17540731, ECO:0000269|PubMed:22797473}.,FUNCTION: Together with EX2, enables higher plants to perceive singlet oxygen as a stress signal in plastid that activates a genetically determined nuclear stress response program which triggers a programmed cell death (PCD). This transfer of singlet oxygen-induced stress-related signals from the plastid to the nucleus that triggers genetically controlled PCD pathway is unique to photosynthetic eukaryotes and operates under mild stress conditions, impeding photosystem II (PSII) without causing photooxidative damage of the plant. {ECO:0000269|PubMed:15539603, ECO:0000269|PubMed:17540731, ECO:0000269|PubMed:22797473}. 72131,76535 Protein EXECUTER 2, chloroplastic (AtEX2),Protein EXECUTER 1, chloroplastic (AtEX1) chloroplast [GO:0009507]; thylakoid membrane [GO:0042651]; singlet oxygen-mediated programmed cell death [GO:0010343] locus:2196889;,locus:2134168; AT1G27510,AT4G33630 protein EXECUTER 1 chloroplastic-like Protein EXECUTER 1, chloroplastic (OsEX1),Protein EXECUTER 2, chloroplastic (OsEX2),Os01g0107900 protein (Fragment) Q7XD99,Q657X6,A0A0N7KC69 EXEC1_ORYSJ,EXEC2_ORYSJ,A0A0N7KC69_ORYSJ EX1 Os10g0485300 LOC_Os10g34400 OSJNBa0029C15.6,EX2 Os01g0107900 OsJ_00066 P0005A05.36 P0482C06.14,Os01g0107900 OSNPB_010107900 FUNCTION: Together with EX2, enables higher plants to perceive singlet oxygen as a stress signal in plastid that activates a genetically determined nuclear stress response program which triggers a programmed cell death (PCD). This transfer of singlet oxygen-induced stress-related signals from the plastid to the nucleus that triggers genetically controlled PCD pathway is unique to photosynthetic eukaryotes and operates under mild stress conditions, impeding photosystem II (PSII) without causing photooxidative damage of the plant. {ECO:0000250|UniProtKB:Q93YW0}.,FUNCTION: Together with EX1, enables higher plants to perceive singlet oxygen as a stress signal in plastid that activates a genetically determined nuclear stress response program which triggers a programmed cell death (PCD). This transfer of singlet oxygen-induced stress-related signals from the plastid to the nucleus that triggers genetically controlled PCD pathway is unique to photosynthetic eukaryotes and operates under mild stress conditions, impeding photosystem II (PSII) without causing photooxidative damage of the plant. {ECO:0000250|UniProtKB:Q94AT5}. ENOG411DWQ9 RNC1 Q9SZV0,F4IN72,F4IN73 RNC1_ARATH,F4IN72_ARATH,F4IN73_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic (Chloroplast ribonuclease III domain protein),Ribonuclease III family protein FUNCTION: Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis. {ECO:0000250|UniProtKB:A6YSL1}. 62432,8735,9327 Ribonuclease III domain-containing protein RNC1, chloroplastic (Chloroplast ribonuclease III domain protein),Ribonuclease III family protein chloroplast [GO:0009507]; intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; double-stranded RNA binding [GO:0003725]; ribonuclease III activity [GO:0004525]; mRNA processing [GO:0006397]; pre-miRNA processing [GO:0031054]; primary miRNA processing [GO:0031053]; production of siRNA involved in RNA interference [GO:0030422]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; RNA splicing [GO:0008380] locus:2126397;,locus:6530298194; AT4G37510,AT2G48121 Ribonuclease III Ribonuclease III domain-containing protein RNC1, chloroplastic (Chloroplast ribonuclease III domain protein) Q8S1Z0 RNC1_ORYSJ RNC1 Os01g0810100 OSNPB_010810100 P0468B07.33 FUNCTION: Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis. {ECO:0000250|UniProtKB:A6YSL1}. ENOG411DWQP DRP2A,DRP2B Q9SE83,Q9LQ55 DRP2A_ARATH,DRP2B_ARATH Dynamin-2A (EC 3.6.5.5) (Dynamin-like protein 6) (Dynamin-related protein 2A),Dynamin-2B (EC 3.6.5.5) (Dynamin-like protein 3) (Dynamin-related protein 2B) FUNCTION: Microtubule-associated force-producing protein involved in clathrin-mediated vesicle trafficking from the trans-Golgi network to the central vacuole. Able to bind and hydrolyze GTP. Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P). {ECO:0000269|PubMed:11449048, ECO:0000269|PubMed:12105222, ECO:0000269|PubMed:12207647}.,FUNCTION: Putative microtubule-associated force-producing protein, able to bind and hydrolyze GTP. {ECO:0000250}. ARA:AT1G10290-MONOMER;,ARA:AT1G59610-MONOMER; R-ATH-169911; 3.6.5.5; Endocytosis (04144),Bacterial invasion of epithelial cells (05100),Synaptic vesicle cycle (04721),Endocrine and other factor-regulated calcium reabsorption (04961) 3.6.5.5 99166,100228 Dynamin-2A (EC 3.6.5.5) (Dynamin-like protein 6) (Dynamin-related protein 2A),Dynamin-2B (EC 3.6.5.5) (Dynamin-like protein 3) (Dynamin-related protein 2B) clathrin-coated vesicle [GO:0030136]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; lipid binding [GO:0008289]; microtubule binding [GO:0008017]; Golgi to vacuole transport [GO:0006896]; mitochondrial fission [GO:0000266],cell plate [GO:0009504]; clathrin-coated endocytic vesicle [GO:0045334]; cytosol [GO:0005829]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; clathrin binding [GO:0030276]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; clathrin-dependent endocytosis [GO:0072583]; mitochondrial fission [GO:0000266]; regulation of establishment of cell polarity [GO:2000114]; response to abscisic acid [GO:0009737]; root hair initiation [GO:0048766] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in siliques. {ECO:0000269|PubMed:10938838}. locus:2012763;,locus:2202847; AT1G10290,AT1G59610 K01528 dynamin GTPase EC 3.6.5.5 Os02g0738900 protein,Os06g0247800 protein (Putative phragmoplastin) (cDNA clone:J033086P03, full insert sequence),Os03g0732200 protein,Os10g0185200 protein Q0DXR0,Q654U5,A0A0P0W360,A0A0N7KRJ0 Q0DXR0_ORYSJ,Q654U5_ORYSJ,A0A0P0W360_ORYSJ,A0A0N7KRJ0_ORYSJ Os02g0738900 Os02g0738900 OsJ_08316 OSNPB_020738900,Os06g0247800 Os06g0247800 OJ1136_C11.25 OsJ_20809 OSNPB_060247800,Os03g0732200 OSNPB_030732200,Os10g0185200 OSNPB_100185200 ENOG411DWQQ CHIB1 P19172 CHIA_ARATH Acidic endochitinase (EC 3.2.1.14) FUNCTION: This protein functions as a defense against chitin containing fungal pathogens. ARA:AT5G24090-MONOMER; 3.2.1.14 33097 Acidic endochitinase (EC 3.2.1.14) extracellular region [GO:0005576]; extracellular space [GO:0005615]; beta-glucosidase activity [GO:0008422]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; lysozyme activity [GO:0003796]; cellular response to water deprivation [GO:0042631]; chitin catabolic process [GO:0006032]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; polysaccharide catabolic process [GO:0000272]; response to cold [GO:0009409]; response to light intensity [GO:0009642]; response to salt stress [GO:0009651]; response to wounding [GO:0009611] locus:2178702; AT5G24090 acidic endochitinase-like OSJNBa0020I02.6 protein (Os04g0347200 protein) Q7XVZ1 Q7XVZ1_ORYSJ Os04g0347200 OsJ_14354 OSJNBa0020I02.6 OSNPB_040347200 ENOG411DWQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DWQS PAP8 Q941D3,F4K2P2 PAP8_ARATH,F4K2P2_ARATH Probable plastid-lipid-associated protein 8, chloroplastic (Fibrillin-6),Plastid-lipid associated protein PAP / fibrillin family protein 26482,26001 Probable plastid-lipid-associated protein 8, chloroplastic (Fibrillin-6),Plastid-lipid associated protein PAP / fibrillin family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534] locus:2147720; AT5G19940 plastid-lipid-associated protein 8 OSJNBa0035M09.17 protein (Os04g0607000 protein) (cDNA clone:006-301-H04, full insert sequence) Q7XS47 Q7XS47_ORYSJ Os04g0607000 OsJ_16082 OSJNBa0035M09.17 OSNPB_040607000 ENOG411DWQT ATXR4,SDG38 Q9FG08,A0A1P8BD47 ATXR4_ARATH,A0A1P8BD47_ARATH Histone-lysine N-methyltransferase ATXR4 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 38) (Trithorax-related protein 4) (TRX-related protein 4),SET domain protein 38 FUNCTION: Histone methyltransferase. {ECO:0000250}. 2.1.1.43 36134,28543 Histone-lysine N-methyltransferase ATXR4 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 38) (Trithorax-related protein 4) (TRX-related protein 4),SET domain protein 38 nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024] locus:2144138; AT5G06620 set domain protein Os10g0410700 protein (SET domain protein 123, putative, expressed) (cDNA clone:001-009-E07, full insert sequence) (cDNA clone:J033058P06, full insert sequence) Q338E2 Q338E2_ORYSJ LOC_Os10g27060 Os10g0410700 OsJ_31491 OSNPB_100410700 ENOG411DWQU HDG11,HDG12 Q9FX31,Q9LMT8 HDG11_ARATH,HDG12_ARATH Homeobox-leucine zipper protein HDG11 (HD-ZIP protein HDG11) (Homeodomain GLABRA 2-like protein 11) (Homeodomain transcription factor HDG11) (Protein HOMEODOMAIN GLABROUS 11),Homeobox-leucine zipper protein HDG12 (HD-ZIP protein HDG12) (Homeodomain GLABRA 2-like protein 12) (Homeodomain transcription factor HDG12) (Protein HOMEODOMAIN GLABROUS 12) DISRUPTION PHENOTYPE: Plants show excess branching of trichomes. {ECO:0000269|PubMed:16778018}. edt1 mutant plants show enhanced drought tolerance due to overexpression of the HDG11 protein. edt1 mutants have a longer primary root with more lateral roots and have a higher root biomass. They have larger epidermal cells and larger stomata but a lower stomatal density. Nevertheless they have higher levels of photosynthesis than WT seedlings. Mutant seedlings accumulate higher levels of ABA following PEG treatment and show constitutively higher levels of Pro. Superoxide dismutase activity is also higher in edt1 mutants. Overexpression of HDG11 in tobacco also causes improved drought tolerance.,More branched trichomes compared with the wild type.,Obvious enhancement of the excess branching phenotype of the hdg11-1 trichome.,Although ectopic overexpression of HDG11 confers increased drought tolerance hdg11-2 mutants do not appear to be less drought tolerant than wild type plants.,The hdg11-2 mutant has increased trichome branching.,Although ectopic overexpression of HDG11 causes increased drought tolerance there is no evidence for reduced drought tolerance in hdg11-2 hdg12 double mutants. The mutants have a wild type appearance with the exception of having increased trichome branching.,No visible phenotype. Severely branched trichomes-T. Takahashi-2006 FUNCTION: Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.,FUNCTION: Probable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}. MISCELLANEOUS: The gain-of-function mutant edt1 (T-DNA tagging) exhibit enhanced drought tolerance, increased root system development, reduced leaf stomatal density, increased levels of abscisic acid and prolamine, increased resistance to oxidative stress and high levels of superoxide dismutase. {ECO:0000269|PubMed:18451323}. 79120,76527 Homeobox-leucine zipper protein HDG11 (HD-ZIP protein HDG11) (Homeodomain GLABRA 2-like protein 11) (Homeodomain transcription factor HDG11) (Protein HOMEODOMAIN GLABROUS 11),Homeobox-leucine zipper protein HDG12 (HD-ZIP protein HDG12) (Homeodomain GLABRA 2-like protein 12) (Homeodomain transcription factor HDG12) (Protein HOMEODOMAIN GLABROUS 12) nucleus [GO:0005634]; lipid binding [GO:0008289]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; plant-type cell wall loosening [GO:0009828]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; maintenance of floral organ identity [GO:0048497]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}.,TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and stamen filament epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. locus:2206880;,locus:2030913; AT1G73360,AT1G17920 homeobox-leucine zipper protein Homeobox-leucine zipper protein ROC8 (GLABRA 2-like homeobox protein 8) (HD-ZIP protein ROC8) (Homeodomain transcription factor ROC8) (Protein RICE OUTERMOST CELL-SPECIFIC 8),Os06g0207966 protein,Os06g0208100 protein (Fragment) Q69T58,A0A0P0WUD5,A0A0P0WU86 ROC8_ORYSJ,A0A0P0WUD5_ORYSJ,A0A0P0WU86_ORYSJ ROC8 GL2-8 Os06g0208100 LOC_Os06g10600 P0664C05.15,Os06g0207966 OSNPB_060207966,Os06g0208100 OSNPB_060208100 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DWQV Q8GUM5,F4J819,F4J820 NICA_ARATH,F4J819_ARATH,F4J820_ARATH Nicastrin,Zn-dependent exopeptidases superfamily protein FUNCTION: Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch. {ECO:0000250}. R-ATH-6798695; 73007,76315,66713 Nicastrin,Zn-dependent exopeptidases superfamily protein integral component of plasma membrane [GO:0005887]; endopeptidase activity [GO:0004175]; Notch signaling pathway [GO:0007219]; protein processing [GO:0016485],endoplasmic reticulum [GO:0005783]; Golgi-associated vesicle [GO:0005798]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; protein processing [GO:0016485],integral component of membrane [GO:0016021]; protein processing [GO:0016485] locus:2083223; AT3G52640 nicastrin Os02g0736500 protein (Putative nicastrin) (cDNA clone:J013002C12, full insert sequence) Q6Z743 Q6Z743_ORYSJ Os02g0736500 Os02g0736500 OsJ_08304 OSNPB_020736500 P0487D09.23 ENOG411DWQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q10ET8,A0A0N7KI36 Q10ET8_ORYSJ,A0A0N7KI36_ORYSJ LOC_Os03g55410 Os03g0762300 OSNPB_030762300,Os03g0762300 OSNPB_030762300 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DWQX HAT3.1,PRH,PRHA Q04996,P48785,F4JPG3 HAT31_ARATH,PRH_ARATH,F4JPG3_ARATH Homeobox protein HAT3.1,Pathogenesis-related homeodomain protein (PRHA),Pathogenesis related homeodomain protein A FUNCTION: Binds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.,FUNCTION: Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. 80461,90657,87582 Homeobox protein HAT3.1,Pathogenesis-related homeodomain protein (PRHA),Pathogenesis related homeodomain protein A nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; positive regulation of transcription, DNA-templated [GO:0045893]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Primarily detected in root tissue. locus:2090694;,locus:2005538; AT3G19510,AT4G29940 homeobox protein Homeobox protein HAZ1 (Homeobox protein HOX1A homolog),Homeodomain protein (Os02g0147800 protein) (Putative pathogenesis related homeodomain protein PRHA) (cDNA clone:J013000I05, full insert sequence) (cDNA clone:J013002J16, full insert sequence) (cDNA clone:J023051F17, full insert sequence),Os02g0147800 protein (Fragment) Q8H991,Q6Z441,A0A0P0VEW2 HAZ1_ORYSJ,Q6Z441_ORYSJ,A0A0P0VEW2_ORYSJ HAZ1 HOX1A Os06g0229300 LOC_Os06g12400 P0525F01.18,Os02g0147800 Os02g0147800 OsJ_05372 OSNPB_020147800 P0479D12.6,Os02g0147800 OSNPB_020147800 FUNCTION: Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}. MISCELLANEOUS: Plants over-expressing HAZ1 show increased length of the uppermost internode and panicle, due to enhanced gibberellin signaling. {ECO:0000269|PubMed:21951842}. ENOG411DWQY PER12 Q96520 PER12_ARATH Peroxidase 12 (Atperox P12) (EC 1.11.1.7) (ATP4a) (PRXR6) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: Exhibits a Ca(2+)-pectate binding affinity which could be interpreted in vivo as a specificity to interact with the pectic structure of the cell wall. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G71695-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 39559 Peroxidase 12 (Atperox P12) (EC 1.11.1.7) (ATP4a) (PRXR6) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Expressed in the first stage of developing seeds. {ECO:0000269|PubMed:11115875}. TISSUE SPECIFICITY: Expressed in roots and leaves. locus:2013001; AT1G71695 peroxidase Peroxidase (EC 1.11.1.7),Os01g0962900 protein Q7XSV2,Q94DM2,Q5JMS4,A0A0P0VD47 Q7XSV2_ORYSJ,Q94DM2_ORYSJ,Q5JMS4_ORYSJ,A0A0P0VD47_ORYSJ Os04g0688100 Os04g0688100 OsJ_16715 OSJNBa0039K24.4 OSNPB_040688100,prx22 Os01g0963000 OsJ_04860 OSNPB_010963000 P0483G10.32,Os01g0962700 Os01g0962700 OSNPB_010962700 P0483G10.28,Os01g0962900 OSNPB_010962900 ENOG411DWQZ Q8RWV1,A0A1P8ATY2,A0A1P8ATW4 Q8RWV1_ARATH,A0A1P8ATY2_ARATH,A0A1P8ATW4_ARATH Dyggve-melchior-clausen syndrome protein (Uncharacterized protein At1g04200),Dyggve-melchior-clausen syndrome protein 82643,79546,70282 Dyggve-melchior-clausen syndrome protein (Uncharacterized protein At1g04200),Dyggve-melchior-clausen syndrome protein Golgi apparatus [GO:0005794]; Golgi organization [GO:0007030] locus:2020230; AT1G04200 Dyggve-Melchior-Clausen syndrome protein Os01g0773100 protein (Putative dymeclin) Q5ZBZ3 Q5ZBZ3_ORYSJ Os01g0773100 OSNPB_010773100 P0490D09.9 P0695H10.31 ENOG411DWQA O64696,Q9C8S1,A0A1P8B0S6,F4I378 O64696_ARATH,Q9C8S1_ARATH,A0A1P8B0S6_ARATH,F4I378_ARATH Uncharacterized protein At2g34510,Uncharacterized protein T1P2.9,Uncharacterized protein 43944,44296,34880,40437 Uncharacterized protein At2g34510,Uncharacterized protein T1P2.9,Uncharacterized protein anchored component of membrane [GO:0031225],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2062321;,locus:2198279; AT2G34510,AT1G29980 Protein of unknown function (DUF642) Os01g0756600 protein (cDNA clone:006-203-C09, full insert sequence) (cDNA clone:J033091N05, full insert sequence),Os01g0531400 protein (Fragment) Q8S0T6,A0A0P0V3K7 Q8S0T6_ORYSJ,A0A0P0V3K7_ORYSJ Os01g0756600 Os01g0756600 OJ1414_E05.5 OsJ_03503 OSNPB_010756600,Os01g0531400 OSNPB_010531400 ENOG411DWQB RLP4 F4HWL3 F4HWL3_ARATH Receptor like protein 4 68419 Receptor like protein 4 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:2032221; AT1G28340 receptor-like serine threonine-protein kinase Os07g0501800 protein (Receptor-like protein kinase-like protein) (cDNA clone:J033089L20, full insert sequence) Q6ZII6 Q6ZII6_ORYSJ Os07g0501800 OJ1112_F06.16 OSNPB_070501800 ENOG411DWQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transcription factor Os06g0699600 protein (Putative CIL) (cDNA clone:J023110D04, full insert sequence),Os04g0117801 protein,Os08g0366675 protein Q5Z857,A0A0N7KIH4,A0A0P0XEY9 Q5Z857_ORYSJ,A0A0N7KIH4_ORYSJ,A0A0P0XEY9_ORYSJ Os06g0699600 OSNPB_060699600 P0468G03.13,Os04g0117801 OSNPB_040117801,Os08g0366675 OSNPB_080366675 ENOG411DWQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: 2-phosphoglycerate kinase-related P-loop NTPase domain-containing protein LPA1 homolog (Protein LOW PHYTIC ACID 1 homolog),Os09g0572200 protein (Fragment) Q651A1,A0A0P0XQP6 LPA1H_ORYSJ,A0A0P0XQP6_ORYSJ Os09g0572200 LOC_Os09g39870 B1331F11.20 OsJ_30434,Os09g0572200 OSNPB_090572200 FUNCTION: Required for the accumulation of phytic acid in seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000250|UniProtKB:B9F4I8}. ENOG411DWQE FRI Q67Z93 FRIG0_ARATH Inactive protein FRIGIDA Produced approximately twice as many juvenile leaves as Columbia indicating that FRI-Sf2 FLC-Col delays the transition from juvenile to adult phase as well as flowering.,Early flowering.,Extreme acceleration of flowering time.,Flowered more rapidly under long days than under short days. Vernalization reduced flowering time in the mutant but the reduction was higher than in WT Columbia.,Significant reduction in flowering time.,Leaves are rounder and paler than wild-type.,Reduced fertility.,Reduced plant size (rosette diameter of plant is ~80% of that of wild-type).,Suppression of the late-flowering phenotype of introgressed FRI allele.,Wild-type phenotype restored.,Early flowering almost identical to Col which is a fri null and did not display any other morphological alterations. Altered vernalization requirement for flowering-C. Dean-2000 34973 Inactive protein FRIGIDA nucleus [GO:0005634]; cell differentiation [GO:0030154]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of vegetative phase change [GO:0010321]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2127013; AT4G00650 FRIGIDA-like NA NA NA NA NA NA NA ENOG411DWQF A0A1P8B9L9,A0A1P8B9N8,Q9FJY0,A0A1P8B9N5,A0A1P8B9M5,B3H5D7 A0A1P8B9L9_ARATH,A0A1P8B9N8_ARATH,Q9FJY0_ARATH,A0A1P8B9N5_ARATH,A0A1P8B9M5_ARATH,B3H5D7_ARATH Uncharacterized protein 57935,55982,69089,63204,50096,66995 Uncharacterized protein locus:2154850; AT5G66600 Ternary complex factor MIP1 NA NA NA NA NA NA NA ENOG411DWQG FH17,FH12,FH18,FH13,FH14 Q9LH02,Q9C7S1,Q9SK28,Q9LVN1,Q9C6S1,A0A1I9LNK8,Q3E727 FH17_ARATH,FH12_ARATH,FH18_ARATH,FH13_ARATH,FH14_ARATH,A0A1I9LNK8_ARATH,Q3E727_ARATH Formin-like protein 17 (AtFH17),Formin-like protein 12 (AtFH12),Formin-like protein 18 (AtFH18),Formin-like protein 13 (AtFH13),Formin-like protein 14 (AtFH14),Actin-binding FH2 (Formin-like) protein microspore formation is defective; microtubule arrays displayed abnormalities during the meiosis-associated process of microspore formation. Decreased pollen number due to defects in meiosis-H. Ren-2010 54969,34169,123226,139728,135515,12310,25520 Formin-like protein 17 (AtFH17),Formin-like protein 12 (AtFH12),Formin-like protein 18 (AtFH18),Formin-like protein 13 (AtFH13),Formin-like protein 14 (AtFH14),Actin-binding FH2 (Formin-like) protein actin binding [GO:0003779],phosphoprotein phosphatase activity [GO:0004721],phragmoplast [GO:0009524]; preprophase band [GO:0009574]; spindle [GO:0005819]; actin binding [GO:0003779]; actin filament binding [GO:0051015]; microtubule binding [GO:0008017]; phosphoprotein phosphatase activity [GO:0004721]; actin filament bundle assembly [GO:0051017]; microsporogenesis [GO:0009556] locus:2009869;,locus:2034471;,locus:504955862; AT3G32400,AT1G42980,AT2G25050,AT5G58160,AT1G31810,AT3G32410 Formin-like protein Formin-like protein 3 (OsFH3),Formin-like protein 7 (OsFH7),Formin-like protein 6 (OsFH6),Formin-like protein (Fragment),Formin-like protein Q7G6K7,Q6K8Z4,Q6ZCX3,A0A0N7KRD2,A0A0P0XDV0,A0A0P0VQM3 FH3_ORYSJ,FH7_ORYSJ,FH6_ORYSJ,A0A0N7KRD2_ORYSJ,A0A0P0XDV0_ORYSJ,A0A0P0VQM3_ORYSJ FH3 Os10g0119300 LOC_Os10g02980 OSJNAa0079B05.2 OSJNBa0079B05.10,FH7 Os02g0794900 LOC_Os02g55150/LOC_Os02g55160/LOC_Os02g55170 OJ1695_H09.6,FH6 Os08g0280200 LOC_Os08g17820 OJ1003_E05.5-1 OsJ_025644 P0026A08.31-1,Os10g0119300 OSNPB_100119300,Os08g0280200 OSNPB_080280200,Os02g0794900 OSNPB_020794900 ENOG411DWQH PEPR2,PEPR1 Q9FZ59,Q9SSL9 PEPR2_ARATH,PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 (EC 2.7.11.1) (Elicitor peptide 1 receptor 2) (PEP1 receptor 2),Leucine-rich repeat receptor-like protein kinase PEPR1 (EC 2.7.11.1) (Elicitor peptide 1 receptor 1) (PEP1 receptor 1) FUNCTION: Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses (By similarity). {ECO:0000250}.,FUNCTION: Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates pathogen-associated molecular pattern (PAMP)-inducible plant responses. Involved in PAMP-triggered immunity (PTI) signaling. Interacts with and phosphorylates the kinase BIK1, a central rate-limiting kinase in PTI signaling (PubMed:23431184). {ECO:0000269|PubMed:16785433, ECO:0000269|PubMed:23431184}. 2.7.11.1 119177,122897 Leucine-rich repeat receptor-like protein kinase PEPR2 (EC 2.7.11.1) (Elicitor peptide 1 receptor 2) (PEP1 receptor 2),Leucine-rich repeat receptor-like protein kinase PEPR1 (EC 2.7.11.1) (Elicitor peptide 1 receptor 1) (PEP1 receptor 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; peptide binding [GO:0042277]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; guanylate cyclase activity [GO:0004383]; peptide receptor activity [GO:0001653]; protein serine/threonine kinase activity [GO:0004674]; immune response [GO:0006955]; innate immune response [GO:0045087]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611] locus:2007918;,locus:2032697; AT1G17750,AT1G73080 receptor-like protein Os08g0446200 protein (Putative receptor-like protein kinase),Os08g0446301 protein Q6ZAB7,A0A0P0XG92 Q6ZAB7_ORYSJ,A0A0P0XG92_ORYSJ Os08g0446200 OSNPB_080446200 P0429B05.10 P0479C12.36,Os08g0446301 OSNPB_080446301 ENOG411DWQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7),Os07g0626700 protein (Fragment),Peroxidase (EC 1.11.1.7) (Fragment),Os01g0293900 protein,Os07g0156910 protein,Os01g0294300 protein Q9FYP0,Q5U1T3,Q69QL4,C7J4Z6,A0A0P0X2D3,A0A0N7KCT0,A0A0P0X2E2,A0A0P0V1F6 Q9FYP0_ORYSJ,Q5U1T3_ORYSJ,Q69QL4_ORYSJ,C7J4Z6_ORYSJ,A0A0P0X2D3_ORYSJ,A0A0N7KCT0_ORYSJ,A0A0P0X2E2_ORYSJ,A0A0P0V1F6_ORYSJ prx11 Os01g0294700 OSNPB_010294700 P0702D12.15,prx10 Os01g0294500 OsJ_01406 OSNPB_010294500,Os07g0156200 prx99 OSJNBa0024L18.28 OSNPB_070156200,Os07g0626700 Os07g0626700 OSNPB_070626700,Os07g0157600 OSNPB_070157600,Os01g0293900 OSNPB_010293900,Os07g0156910 OSNPB_070156910,Os01g0294300 OSNPB_010294300 ENOG411DWQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA agmatine coumaroyltransferase-2-like Putrescine hydroxycinnamoyltransferase (EC 2.3.1.-),Os03g0682900 protein (Putative hydroxycinnamoyl transferase) (Transferase family protein),Os05g0116800 protein,Os05g0267850 protein (Fragment),Os08g0331100 protein (Fragment) Q7XXN4,Q7Y009,A0A0P0WH66,A0A0P0WK94,A0A0P0XEW4 PUHT_ORYSJ,Q7Y009_ORYSJ,A0A0P0WH66_ORYSJ,A0A0P0WK94_ORYSJ,A0A0P0XEW4_ORYSJ Os09g0544000 LOC_Os09g37200 OsJ_30201 P0705E11.4,OSJNBb0070O09.10 Os03g0682900 LOC_Os03g47860 OSNPB_030682900,Os05g0116800 OSNPB_050116800,Os05g0267850 OSNPB_050267850,Os08g0331100 OSNPB_080331100 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to putrescine, to produce coumaroyl putrescine. Can use feruloyl-CoA, caffeoyl-CoA and sinapoyl-CoA as acyl donors. Seems to be able to transfer the acyl group from feruloyl-CoA to the acyl acceptors agmatine and spermidine. {ECO:0000269|PubMed:24908251, ECO:0000269|PubMed:27015846}. ENOG411DWQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar sorting protein 9 (VPS9) domain Os03g0842700 protein (Putative Vacuolar sorting protein (With alternative splicing)),Os03g0842700 protein (Fragment),Os03g0842700 protein Q6AVP5,A0A0P0W5Z2,A0A0P0W5W8,A0A0P0W5F7 Q6AVP5_ORYSJ,A0A0P0W5Z2_ORYSJ,A0A0P0W5W8_ORYSJ,A0A0P0W5F7_ORYSJ OSJNBa0075M12.27 Os03g0842700 OSNPB_030842700,Os03g0842700 OSNPB_030842700 ENOG411DWQM MJH22.6 Q84K84 Q84K84_ARATH Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (Uncharacterized protein At5g63000) 21523 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (Uncharacterized protein At5g63000) integral component of membrane [GO:0016021] locus:2166310; AT5G63000 Tim17/Tim22/Tim23/Pmp24 family Os01g0271000 protein Q5NBF6 Q5NBF6_ORYSJ Os01g0271000 Os01g0271000 OsJ_01246 OSNPB_010271000 P0667A10.31 P0693B08.11 ENOG411DWQN Q0WWX4 Q0WWX4_ARATH Galactose oxidase/kelch repeat superfamily protein (RanGAP1 interacting protein) 77639 Galactose oxidase/kelch repeat superfamily protein (RanGAP1 interacting protein) cytosol [GO:0005829] locus:2183008; AT5G18590 Kelch motif family protein expressed Kelch motif family protein, expressed (Os12g0538800 protein),Os11g0657000 protein Q2QP85,A0A0P0Y4Z3 Q2QP85_ORYSJ,A0A0P0Y4Z3_ORYSJ LOC_Os12g35350 Os12g0538800 OSNPB_120538800,Os11g0657000 OSNPB_110657000 ENOG411DS31 F27H5_50 O80516,Q8VZ78,F4JAP3 O80516_ARATH,Q8VZ78_ARATH,F4JAP3_ARATH ELMO/CED-12 family protein (Expressed protein),ELMO/CED-12 family protein (Uncharacterized protein At3g60260) (Uncharacterized protein At3g60260; F27H5_50),ELMO/CED-12 family protein 30497,30254,27909 ELMO/CED-12 family protein (Expressed protein),ELMO/CED-12 family protein (Uncharacterized protein At3g60260) (Uncharacterized protein At3g60260; F27H5_50),ELMO/CED-12 family protein locus:2042456;,locus:2081947; AT2G44770,AT3G60260 domain-containing protein Os02g0652300 protein (Phagocytosis and cell motility protein ELMO1-like) (cDNA clone:J023020M12, full insert sequence) Q6H8H7 Q6H8H7_ORYSJ Os02g0652300 OsJ_07760 OSNPB_020652300 P0491E01.14 ENOG411EIE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E39S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 NA NA NA NA NA NA NA ENOG411E39R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MIKC MADS-domain protein NA NA NA NA NA NA NA ENOG411E396 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E395 MHF15.7 Q8L7K4 Q8L7K4_ARATH DNAJ heat shock N-terminal domain-containing protein (Uncharacterized protein At5g06410) Glossy, bright green stems; Reduced fertility; Abnormal trichome development-S. Moller-2009 R-ATH-1362409; 28931 DNAJ heat shock N-terminal domain-containing protein (Uncharacterized protein At5g06410) ATPase activator activity [GO:0001671]; chaperone binding [GO:0051087]; iron ion homeostasis [GO:0055072]; protein maturation by iron-sulfur cluster transfer [GO:0097428]; protein oligomerization [GO:0051259] locus:2164310; AT5G06410 iron-sulfur cluster co-chaperone protein HscB Co-chaperone Hsc20 family protein, expressed (Os12g0456200 protein) (cDNA clone:J023020P09, full insert sequence) Q2QRM4 Q2QRM4_ORYSJ LOC_Os12g27070 Os12g0456200 OsJ_36006 OSNPB_120456200 ENOG411E58P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os09g0368800 protein A0A0P0XM04 A0A0P0XM04_ORYSJ Os09g0368800 OSNPB_090368800 ENOG411E58U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY NA NA NA NA NA NA NA ENOG411E58Y Q9XIN3 Q9XIN3_ARATH At2g27260/F12K2.16 (Expressed protein) (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein At2g27260) 27580 At2g27260/F12K2.16 (Expressed protein) (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein At2g27260) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2039632; AT2G27260 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E58A EMB3123 Q9LVW6 Q9LVW6_ARATH PPR containing protein Null: Embryo defective; Cotyledon; Knockdown: Pigment defective embryo-D. Meinke-2011 FUNCTION: Essential protein required during embryogenesis (PubMed:15266054, PubMed:22495966). Mediates group II organellar RNA introns splicing (e.g. ycf3-2 and trnA) (PubMed:22495966). Binds weakly to specific RNA (PubMed:22495966, PubMed:24047899). Promotes the biogenesis of chloroplast thylakoid membranes (PubMed:22495966). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22495966, ECO:0000269|PubMed:24047899}. 24849 PPR containing protein chloroplast [GO:0009507]; RNA binding [GO:0003723]; chloroplast organization [GO:0009658]; Group II intron splicing [GO:0000373] locus:2089154; AT3G27750 NA Os01g0158100 protein (Similar to Arabidopsis thaliana hypothetical protein T6H20.100) (Tha8-like) Q9FYP8 Q9FYP8_ORYSJ Os01g0158100 Os01g0158100 OsJ_00452 OSNPB_010158100 P0011G08.45 ENOG411E58I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os08g0102900 protein Q69U60 Q69U60_ORYSJ P0015C07.23 Os08g0102900 OSNPB_080102900 ENOG411E58M Q3ECK2 PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial 61449 Pentatricopeptide repeat-containing protein At1g62680, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2026207; AT1G62680 BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIR AT1G63130.1) NA NA NA NA NA NA NA ENOG411DXS0 Q9STI4,Q8L742,Q9STI3,A0A1P8B956 Q9STI4_ARATH,Q8L742_ARATH,Q9STI3_ARATH,A0A1P8B956_ARATH Amine oxidase (EC 1.4.3.-) ARA:AT4G12270-MONOMER;,ARA:AT4G12290-MONOMER;,ARA:AT4G12280-MONOMER; R-ATH-211945;R-ATH-6798695; 1.4.3.- 51593,83233,33965,75319 Amine oxidase (EC 1.4.3.-) copper ion binding [GO:0005507]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; amine metabolic process [GO:0009308],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; vacuole [GO:0005773]; copper ion binding [GO:0005507]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; amine metabolic process [GO:0009308],integral component of membrane [GO:0016021]; copper ion binding [GO:0005507]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; amine metabolic process [GO:0009308] locus:2139039;,locus:2139069;,locus:2139054; AT4G12270,AT4G12290,AT4G12280 amine oxidase Amine oxidase (EC 1.4.3.-),Amine oxidase (EC 1.4.3.-) (Fragment) A0A0P0W8J1,A0A0P0WB40,A0A0P0W896,A0A0P0W8B2,A0A0P0W7X9 A0A0P0W8J1_ORYSJ,A0A0P0WB40_ORYSJ,A0A0P0W896_ORYSJ,A0A0P0W8B2_ORYSJ,A0A0P0W7X9_ORYSJ Os04g0269600 OSNPB_040269600,Os04g0465388 OSNPB_040465388 ENOG411DXS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 16 Os06g0696500 protein,Os06g0696566 protein (Fragment) Q0D9V3,A0A0P0X0P2 Q0D9V3_ORYSJ,A0A0P0X0P2_ORYSJ Os06g0696500 Os06g0696500 OSNPB_060696500,Os06g0696566 OSNPB_060696566 ENOG411DXS5 ABCI12 Q944H2 AB12I_ARATH Protein ABCI12, chloroplastic (ABC transporter I family member 12) (ABC transporter ABCI.12) (AtABCI12) 42938 Protein ABCI12, chloroplastic (ABC transporter I family member 12) (ABC transporter ABCI.12) (AtABCI12) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2089910; AT3G21580 protein ABCI12 chloroplastic-like Os05g0400600 protein (cDNA clone:J013108A03, full insert sequence) Q6ATY7 Q6ATY7_ORYSJ Os05g0400600 Os05g0400600 OsJ_18477 OSJNBa0035J16.6 OSNPB_050400600 ENOG411DXS7 ECT5 A0A1I9LTL9,Q0WR25,A0A1I9LTL8,A0A1I9LTL7,F4JB30 A0A1I9LTL9_ARATH,Q0WR25_ARATH,A0A1I9LTL8_ARATH,A0A1I9LTL7_ARATH,F4JB30_ARATH Evolutionarily conserved C-terminal region 5,Evolutionarily conserved C-terminal region 5 (Uncharacterized protein At3g13060) 67137,69481,49442,68466,60562 Evolutionarily conserved C-terminal region 5,Evolutionarily conserved C-terminal region 5 (Uncharacterized protein At3g13060) RNA binding [GO:0003723],cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2089280; AT3G13060 YT521-B-like domain Os08g0556000 protein (Putative rubisco subunit binding-protein beta subunit),Os08g0556000 protein (Fragment) Q6Z0T2,A0A0P0XJ89 Q6Z0T2_ORYSJ,A0A0P0XJ89_ORYSJ Os08g0556000 OJ1150_A11.7 OSNPB_080556000 P0439B07.22,Os08g0556000 OSNPB_080556000 ENOG411DXSH BHLH74 Q6NKN9 BH074_ARATH Transcription factor bHLH74 (Basic helix-loop-helix protein 74) (AtbHLH74) (bHLH 74) (Protein ACTIVATOR FOR CELL ELONGATION 2) (Transcription factor EN 90) (bHLH transcription factor bHLH074) FUNCTION: Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. MISCELLANEOUS: Plants over-expressing BHLH74 show increased hypocotyl and cotyledon lengths. {ECO:0000305|PubMed:23161888}. 40152 Transcription factor bHLH74 (Basic helix-loop-helix protein 74) (AtbHLH74) (bHLH 74) (Protein ACTIVATOR FOR CELL ELONGATION 2) (Transcription factor EN 90) (bHLH transcription factor bHLH074) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2201906; AT1G10120 Transcription factor Os03g0728900 protein (Fragment) A0A0P0W2I2 A0A0P0W2I2_ORYSJ Os03g0728900 OSNPB_030728900 ENOG411DXSK NUP88 Q9FFK6 NUP88_ARATH Nuclear pore complex protein NUP88 (Nucleoporin 88) (Protein EMBRYO DEFECTIVE 2789) (Protein MODIFIER OF SNC1,7) DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:19700630}. Mutant plants exhibit defects in basal and R protein-mediated immunity and in systemic acquired resistance but do not display obvious pleiotropic defects in development salt tolerance or plant hormone responses. Embryo defective; Preglobular / Globular-D. Meinke-2008 FUNCTION: Involved in the regulation of exportin-mediated nuclear protein export. Required for resistance mediated by multiple R proteins and for the appropriate nuclear accumulation of SNC1 and of the downstream defense signaling components EDS1 and NPR1. Not involved in salt tolerance, ethylene and auxin responses, but required for systemic acquired resistance. {ECO:0000269|PubMed:19700630, ECO:0000269|PubMed:21327081}. 89731 Nuclear pore complex protein NUP88 (Nucleoporin 88) (Protein EMBRYO DEFECTIVE 2789) (Protein MODIFIER OF SNC1,7) nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; transporter activity [GO:0005215]; innate immune response [GO:0045087]; mRNA export from nucleus [GO:0006406]; protein export from nucleus [GO:0006611]; protein import into nucleus [GO:0006606]; ribosomal large subunit export from nucleus [GO:0000055]; ribosomal small subunit export from nucleus [GO:0000056]; systemic acquired resistance [GO:0009627] locus:2166424; AT5G05680 Nuclear pore component Os04g0608400 protein (Fragment) A0A0P0WEN1,A0A0P0WET2,A0A0N7KJN6 A0A0P0WEN1_ORYSJ,A0A0P0WET2_ORYSJ,A0A0N7KJN6_ORYSJ Os04g0608400 OSNPB_040608400 ENOG411DXSE ELP1 Q9FNA4 ELP1_ARATH Elongator complex protein 1 (AtELP1) (Elongator component 1) (Protein ABA-OVERLY SENSITIVE 1) (Protein ELONGATA 2) DISRUPTION PHENOTYPE: Narrow leaves and reduced root growth that results from a decreased cell division rate and a reduced apical dominance. Increased abscisic acid (ABA) sensitivity and drought tolerance. Higher resistance to oxidative stress mediated by methyl viologen (MV) that blocks electron transport during photosynthesis and by CsCl in light. Accumulates anthocyanins. {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:16943431, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. Reduced organ growth. Reduced cell proliferation rate. Very low germination rate; Slow seedling growth; Narrow leaves; Short inflorescence stems and primary root; Altered inflorescence architecture; Resistant to drought-Z. Gong-2006 FUNCTION: Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). Promotes organs development by modulating cell division rate. Required for auxin distribution or signaling. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. {ECO:0000250, ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:16943431, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. 146626 Elongator complex protein 1 (AtELP1) (Elongator component 1) (Protein ABA-OVERLY SENSITIVE 1) (Protein ELONGATA 2) cytosol [GO:0005829]; Elongator holoenzyme complex [GO:0033588]; nucleus [GO:0005634]; transferase activity, transferring acyl groups [GO:0016746]; 5-carbamoylmethyl uridine residue modification [GO:0080178]; abscisic acid-activated signaling pathway [GO:0009738]; auxin-activated signaling pathway [GO:0009734]; cell proliferation [GO:0008283]; cellular response to abscisic acid stimulus [GO:0071215]; fruit morphogenesis [GO:0048530]; leaf morphogenesis [GO:0009965]; negative regulation of anthocyanin metabolic process [GO:0031538]; organ growth [GO:0035265]; positive regulation of cell proliferation [GO:0008284]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of auxin mediated signaling pathway [GO:0010928]; regulation of leaf development [GO:2000024]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979]; transcription, DNA-templated [GO:0006351]; tRNA modification [GO:0006400]; tRNA wobble uridine modification [GO:0002098] TISSUE SPECIFICITY: Expressed in meristematic tissues of in roots, stems, leaves, seedlings, cotyledons, guard cells, floral buds, flowers, siliques, and shoot apices. {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:16943431, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. locus:2173199; AT5G13680 elongator complex protein Elongator complex protein 1 Q0D5G1 Q0D5G1_ORYSJ Os07g0563700 Os07g0563700 OSNPB_070563700 FUNCTION: Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. {ECO:0000256|PIRNR:PIRNR017233}. ENOG411DXSF PCMP-H82 Q683I9 PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 64946 Pentatricopeptide repeat-containing protein At3g62890 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2081635; AT3G62890 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DXSY DCL3 Q9LXW7,A0A1I9LMD2,F4J0I5,A0A1I9LMD4,A0A1I9LMD3 DCL3_ARATH,A0A1I9LMD2_ARATH,F4J0I5_ARATH,A0A1I9LMD4_ARATH,A0A1I9LMD3_ARATH Endoribonuclease Dicer homolog 3 (EC 3.1.26.-) (Dicer-like protein 3) (AtDCL3),Dicer-like 3 FUNCTION: Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of repeat-associated small interfering RNAs (ra-siRNAs, derived from heterochromatin and DNA repeats such as transposons) by cleaving small dsRNAs into 24 nucleotide ra-siRNAs. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cabbage leaf curl virus (CaLCuV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL3 function in RNA silencing. Acts redundantly with DICER-LIKE 1 (DCL1) to promote flowering via repression of FLOWERING LOCUS C (FLC). Does not seem to be involved in microRNAs (miRNAs) processing. {ECO:0000269|PubMed:16040244, ECO:0000269|PubMed:16810317, ECO:0000269|PubMed:17579240, ECO:0000269|PubMed:17586651, ECO:0000269|PubMed:18353962}. 3.1.26.- 177425,169138,176449,151883,176362 Endoribonuclease Dicer homolog 3 (EC 3.1.26.-) (Dicer-like protein 3) (AtDCL3),Dicer-like 3 cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; RISC complex [GO:0016442]; ATP binding [GO:0005524]; double-stranded RNA binding [GO:0003725]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; ribonuclease III activity [GO:0004525]; maintenance of DNA methylation [GO:0010216]; production of siRNA involved in RNA interference [GO:0030422]; production of ta-siRNAs involved in RNA interference [GO:0010267]; RNA virus induced gene silencing [GO:0051214],ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]; ribonuclease III activity [GO:0004525]; RNA processing [GO:0006396],ribonuclease III activity [GO:0004525]; RNA processing [GO:0006396] locus:2097139; AT3G43920 endoribonuclease Dicer Endoribonuclease Dicer homolog 3a (Dicer-like protein 3a) (OsDCL3a) (EC 3.1.26.-),Endoribonuclease Dicer homolog 3b (Dicer-like protein 3b) (OsDCL3b) (EC 3.1.26.-),Os10g0485600 protein (Fragment),Os08g0148600 protein Q5N870,Q7XD96,A0A0P0XVZ5,A0A0P0XCJ6 DCL3A_ORYSJ,DCL3B_ORYSJ,A0A0P0XVZ5_ORYSJ,A0A0P0XCJ6_ORYSJ DCL3A Os01g0909200 LOC_Os01g68120 P0456E05.21,DCL3B Os10g0485600 LOC_Os10g34430 OSJNBa0029C15.23,Os10g0485600 OSNPB_100485600,Os08g0148600 OSNPB_080148600 FUNCTION: Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs (By similarity). {ECO:0000250}. ENOG411DXSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0260500 protein (Fragment) A0A0P0V0K9 A0A0P0V0K9_ORYSJ Os01g0260500 OSNPB_010260500 ENOG411DXSQ LUT2 Q38932 LCYE_ARATH Lycopene epsilon cyclase, chloroplastic (EC 5.5.1.18) (Protein LUTEIN DEFICIENT 2) Almost 80% of carotenoids are represented by β-carotene.,Lacks lutein.,Reduced conversion of &,Double mutants were indistinguishable from bps1 single mutants. Complete loss of lutein accumulation; Elevated carotenoid levels; Heterozygotes: Low lutein levels-D. DellaPenna-1996 FUNCTION: Involved in carotenoid biosynthesis. Catalyzes the single epsilon-cyclization reaction which converts lycopene to delta-carotene and neurosporene to alpha-zeacarotene (PubMed:8837512, PubMed:11226339). Required for lutein biosynthesis (PubMed:9789087). {ECO:0000269|PubMed:11226339, ECO:0000269|PubMed:8837512, ECO:0000269|PubMed:9789087}. PATHWAY: Carotenoid biosynthesis; alpha-zeacarotene biosynthesis.; PATHWAY: Carotenoid biosynthesis; delta-carotene biosynthesis. ARA:AT5G57030-MONOMER;MetaCyc:AT5G57030-MONOMER; 5.5.1.18; 5.5.1.18 58491 Lycopene epsilon cyclase, chloroplastic (EC 5.5.1.18) (Protein LUTEIN DEFICIENT 2) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; lycopene epsilon cyclase activity [GO:0045435]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; carotenoid biosynthetic process [GO:0016117]; xanthophyll biosynthetic process [GO:0016123] locus:2164590; AT5G57030 Lycopene epsilon cyclase Os01g0581300 protein (Putative lycopene epsilon-cyclase) (cDNA clone:J013056J03, full insert sequence) (cDNA clone:J013105L24, full insert sequence) Q8LJ81 Q8LJ81_ORYSJ Os01g0581300 B1097D05.16 OSNPB_010581300 ENOG411DXSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain Os09g0481100 protein (Putative phosphatidylinositol transfer-like protein II) Q69QR7 Q69QR7_ORYSJ Os09g0481100 OSNPB_090481100 P0463D04.19 P0463G11.34 ENOG411DXSS LRR-RLK Q8GY50,A0A1P8ASB5,A0A1P8ASB9,A0A1P8ASB3,A0A1P8ASH0 Q8GY50_ARATH,A0A1P8ASB5_ARATH,A0A1P8ASB9_ARATH,A0A1P8ASB3_ARATH,A0A1P8ASH0_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein At1g79620/F20B17_5),Leucine-rich repeat protein kinase family protein 106232,79805,109244,74306,88199 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein At1g79620/F20B17_5),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2019863; AT1G79620 Leucine-rich repeat receptor-like protein kinase Os05g0486100 protein,Os03g0329700 protein (Protein kinase domain containing protein, expressed),Os01g0816600 protein (Fragment),Os05g0486100 protein (Fragment) Q0DH82,Q10LZ2,A0A0P0V9M1,A0A0N7KKZ8 Q0DH82_ORYSJ,Q10LZ2_ORYSJ,A0A0P0V9M1_ORYSJ,A0A0N7KKZ8_ORYSJ Os05g0486100 Os05g0486100 OsJ_18989 OSNPB_050486100,Os03g0329700 LOC_Os03g21230 OsJ_10704 OSNPB_030329700,Os01g0816600 OSNPB_010816600,Os05g0486100 OSNPB_050486100 ENOG411EIH8 PSY2 Q8LE92 PSY2_ARATH Protein PSY2 [Cleaved into: Tyrosine-sulfated glycopeptide 2] FUNCTION: Promotes cellular proliferation and expansion. {ECO:0000250}. 7694 Protein PSY2 [Cleaved into: Tyrosine-sulfated glycopeptide 2] extracellular region [GO:0005576]; growth factor activity [GO:0008083] locus:505006387; AT3G47295 NA NA NA NA NA NA NA NA ENOG411EIH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIH3 Q9LNQ6 Q9LNQ6_ARATH At1g17490/F1L3_4 (Epidermal patterning factor-like protein) (F1L3.19) 8549 At1g17490/F1L3_4 (Epidermal patterning factor-like protein) (F1L3.19) locus:2018843; AT1G17490 NA NA NA NA NA NA NA NA ENOG411EIH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIH1 XERO2 P42758 XERO2_ARATH Dehydrin Xero 2 (Low-temperature-induced protein LTI30) 20909 Dehydrin Xero 2 (Low-temperature-induced protein LTI30) cytosol [GO:0005829]; membrane [GO:0016020]; cobalt ion binding [GO:0050897]; copper ion binding [GO:0005507]; nickel cation binding [GO:0016151]; zinc ion binding [GO:0008270]; cold acclimation [GO:0009631]; defense response to fungus [GO:0050832]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in desiccated pollen grains or seeds, roots, stems, trichomes and the vascular tissues of leaves, and in all tissues of young seedlings. {ECO:0000269|PubMed:8601466}. locus:2080918; AT3G50970 Dehydrin NA NA NA NA NA NA NA ENOG411EIHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHX Q5XUY2 Q5XUY2_ARATH Reverse transcriptase family protein 12168 Reverse transcriptase family protein RNA-directed DNA polymerase activity [GO:0003964] locus:2153276; AT5G59060 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein Os07g0559100 protein Q6Z405 Q6Z405_ORYSJ P0567H04.20 Os07g0559100 OSNPB_070559100 ENOG411EIHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: translation INITIATION FACTOR Os10g0392700 protein (Fragment) A0A0N7KRQ6 A0A0N7KRQ6_ORYSJ Os10g0392700 OSNPB_100392700 ENOG411EIHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0257700 protein A3BAE4 A3BAE4_ORYSJ Os06g0257700 OsJ_20869 OSNPB_060257700 ENOG411EIHJ A7REE7,A7REF0,A8MS25,A7REE4,A7REE8,A7REE9,A8MR37,A8MRY8,A8MRL8,A8MRP7 A7REE7_ARATH,A7REF0_ARATH,A8MS25_ARATH,A7REE4_ARATH,A7REE8_ARATH,A7REE9_ARATH,A8MR37_ARATH,A8MRY8_ARATH,A8MRL8_ARATH,A8MRP7_ARATH Plant thionin family protein 10271,10322,9799,11141,10362,10270,11151,10117,10338,10243 Plant thionin family protein locus:4010713500;,locus:4010713512;,locus:4010713509;locus:4010713511;,locus:4010713462;,locus:4010713501;locus:4010713504;locus:4010713505;locus:4010713508;,locus:4010713502;locus:4010713503;locus:4010713506;locus:4010713507;,locus:4010713463;,locus:4010713459;,locus:4010713514;,locus:4010713513; AT1G34792,AT1G34860,AT1G34840AT1G34850;,AT1G21925,AT1G34795AT1G34810;AT1G34815;AT1G34830;,AT1G34800AT1G34805;AT1G34820;AT1G34825;,AT1G21928,AT1G21835,AT1G35035,AT1G34930 Plant thionin family protein NA NA NA NA NA NA NA ENOG411EIHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0455750 protein A0A0P0XMP6 A0A0P0XMP6_ORYSJ Os09g0455750 OSNPB_090455750 ENOG411EIHF Q9LHT2,Q9LHF2,Q3ECM7,A8MS10,A8MRM7,A8MR94,F4HZQ2,F4HZQ3,A8MRJ5 Q9LHT2_ARATH,Q9LHF2_ARATH,Q3ECM7_ARATH,A8MS10_ARATH,A8MRM7_ARATH,A8MR94_ARATH,F4HZQ2_ARATH,F4HZQ3_ARATH,A8MRJ5_ARATH Gb|AAF16529.1 (Plant thionin family protein),Plant thionin family protein 9857,9930,10368,10464,10255,9974,10270,10215,9888 Gb|AAF16529.1 (Plant thionin family protein),Plant thionin family protein endomembrane system [GO:0012505]; pollen tube [GO:0090406],integral component of membrane [GO:0016021] locus:2147381;locus:4010714024;,locus:4010713773;,locus:1006230690;,locus:4010713562;,locus:4010713979;,locus:4010713561;,locus:4010713460;,locus:4010713461;,locus:4010714029; AT5G36720AT5G36805;,AT3G24465,AT1G58242,AT1G58248,AT5G34828,AT1G58245,AT1G21864,AT1G21866,AT5G38378 Plant thionin family protein NA NA NA NA NA NA NA ENOG411EIHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EIHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: microtubule-associated protein NA NA NA NA NA NA NA ENOG411EIHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: parkinson protein 7 NA NA NA NA NA NA NA ENOG411DVES MAC12.24 Q9FFZ0 Q9FFZ0_ARATH AT5g13810/MAC12_24 (Glutaredoxin family protein) (Similarity to unknown protein) 30664 AT5g13810/MAC12_24 (Glutaredoxin family protein) (Similarity to unknown protein) cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2159038; AT5G13810 glutaredoxin family NA NA NA NA NA NA NA ENOG411DVEF T5L19.180 Q94F26,A0A1P8B432 Q94F26_ARATH,A0A1P8B432_ARATH Protein phosphatase methylesterase 1 (PME-1) (EC 3.1.1.-),Esterase/lipase/thioesterase family protein FUNCTION: Demethylates proteins that have been reversibly carboxymethylated. {ECO:0000256|PIRNR:PIRNR022950}. R-ATH-69273; 3.1.1.- 38563,30448 Protein phosphatase methylesterase 1 (PME-1) (EC 3.1.1.-),Esterase/lipase/thioesterase family protein vacuole [GO:0005773]; protein methylesterase activity [GO:0051723]; protein demethylation [GO:0006482],protein methylesterase activity [GO:0051723]; protein demethylation [GO:0006482] locus:2140583; AT4G10050 Demethylates proteins that have been reversibly carboxymethylated (By similarity) Protein phosphatase methylesterase 1 (PME-1) (EC 3.1.1.-) Q0JCY4 Q0JCY4_ORYSJ Os04g0443500 Os04g0443500 OSNPB_040443500 FUNCTION: Demethylates proteins that have been reversibly carboxymethylated. {ECO:0000256|PIRNR:PIRNR022950}. ENOG411DVEH XRCC4 Q682V0,Q058G5 XRCC4_ARATH,Q058G5_ARATH DNA repair protein XRCC4,At1g61410 (DNA double-strand break repair and VJ recombination XRCC4) FUNCTION: May be involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair. May bind to DNA. The LIG4-XRCC4 complex is probably responsible for the NHEJ ligation step, and XRCC4 may enhance the joining activity of LIG4 (By similarity). {ECO:0000250}. 29854,13221 DNA repair protein XRCC4,At1g61410 (DNA double-strand break repair and VJ recombination XRCC4) nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA recombination [GO:0006310]; double-strand break repair via nonhomologous end joining [GO:0006303],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA recombination [GO:0006310]; double-strand break repair via nonhomologous end joining [GO:0006303] locus:2094593;,locus:2197679; AT3G23100,AT1G61410 DNA repair protein Double strand break repair protein, putative, expressed (Os03g0740800 protein) (cDNA clone:J023110F02, full insert sequence) Q7Y1H0 Q7Y1H0_ORYSJ OSJNBa0057G07.1 OJ1365_D05.20 LOC_Os03g53000 Os03g0740800 OSNPB_030740800 ENOG411DVEJ F2K15.50,FOP,F2K15.60,F2K15.70 Q9M3B3,Q5KS41,Q9M3B2,Q9M3B1,A0A1I9LN68 Q9M3B3_ARATH,Q5KS41_ARATH,Q9M3B2_ARATH,Q9M3B1_ARATH,A0A1I9LN68_ARATH O-acyltransferase (WSD1-like) family protein (Uncharacterized protein At3g49190) (Uncharacterized protein At3g49190/F2K15_50) (Uncharacterized protein F2K15.50),FOLDED PETALS (O-acyltransferase (WSD1-like) family protein),O-acyltransferase (WSD1-like) family protein (Uncharacterized protein F2K15.60),O-acyltransferase (WSD1-like) family protein (Uncharacterized protein F2K15.70),O-acyltransferase (WSD1-like) family protein ARA:GQT-1655-MONOMER;,ARA:GQT-2840-MONOMER;,ARA:GQT-1009-MONOMER;,ARA:GQT-2084-MONOMER; 59649,54849,57254,58529,48930 O-acyltransferase (WSD1-like) family protein (Uncharacterized protein At3g49190) (Uncharacterized protein At3g49190/F2K15_50) (Uncharacterized protein F2K15.50),FOLDED PETALS (O-acyltransferase (WSD1-like) family protein),O-acyltransferase (WSD1-like) family protein (Uncharacterized protein F2K15.60),O-acyltransferase (WSD1-like) family protein (Uncharacterized protein F2K15.70),O-acyltransferase (WSD1-like) family protein plasma membrane [GO:0005886]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; triglyceride biosynthetic process [GO:0019432],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; petal morphogenesis [GO:0048446]; triglyceride biosynthetic process [GO:0019432],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; triglyceride biosynthetic process [GO:0019432],integral component of membrane [GO:0016021]; diacylglycerol O-acyltransferase activity [GO:0004144]; glycerolipid biosynthetic process [GO:0045017] locus:2082906;,locus:2154287;,locus:2082921;,locus:2082936; AT3G49190,AT5G53390,AT3G49200,AT3G49210 O-acyltransferase (WSD1-like) Os01g0770000 protein (cDNA clone:J013130A21, full insert sequence),Os01g0681000 protein (cDNA clone:J013111A08, full insert sequence),Os05g0556300 protein,Os01g0770100 protein Q94EF2,Q5QLE2,A0A0P0WQG4,A0A0P0V8R9 Q94EF2_ORYSJ,Q5QLE2_ORYSJ,A0A0P0WQG4_ORYSJ,A0A0P0V8R9_ORYSJ Os01g0770000 Os01g0770000 OSNPB_010770000 P0665A11.11,Os01g0681000 OSNPB_010681000 P0019E03.16,Os05g0556300 OSNPB_050556300,Os01g0770100 OSNPB_010770100 ENOG411DVE1 MNJ8.18 Q93Z11 Q93Z11_ARATH AT5g37360/MNJ8_150 (LOW protein: ammonium transporter 1-like protein) 33439 AT5g37360/MNJ8_150 (LOW protein: ammonium transporter 1-like protein) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2169150; AT5G37360 NA Os02g0815400 protein (cDNA clone:006-212-D07, full insert sequence) Q6K6C2 Q6K6C2_ORYSJ Os02g0815400 Os02g0815400 OJ1293_E04.30 OsJ_08859 OSNPB_020815400 P0643F09.3 ENOG411DVE5 Q9FLE4 GUF1_ARATH Translation factor GUF1 homolog, mitochondrial (EC 3.6.5.-) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase) FUNCTION: Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. {ECO:0000255|HAMAP-Rule:MF_03137}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03137}. 3.6.5.- 73595 Translation factor GUF1 homolog, mitochondrial (EC 3.6.5.-) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase) mitochondrial inner membrane [GO:0005743]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation [GO:0006412] locus:2178042; AT5G39900 Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction by catalyzing a one- codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner (By similarity) Translation factor GUF1 homolog, mitochondrial (EC 3.6.5.-) (Elongation factor 4 homolog) (EF-4) (GTPase GUF1 homolog) (Ribosomal back-translocase) Q5VQ69 GUF1_ORYSJ Os06g0144800 LOC_Os06g05250 OsJ_20104 OSJNBa0007O20.17 FUNCTION: Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. {ECO:0000255|HAMAP-Rule:MF_03137}. ENOG411DVE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os07g0436600 protein Q0D6V3 Q0D6V3_ORYSJ Os07g0436600 Os07g0436600 OsJ_24038 OSNPB_070436600 ENOG411DVE9 RPA1D,RPA1B Q9FME0,Q9SD82 RFA1D_ARATH,RFA1B_ARATH Replication protein A 70 kDa DNA-binding subunit D (AtRPA70D) (AtRPA1-4) (Replication factor A protein 1D) (Replication protein A 1D) (AtRPA1D),Replication protein A 70 kDa DNA-binding subunit B (AtRPA70B) (AtRPA1-5) (Replication factor A protein 1B) (Replication protein A 1B) (AtRPA1B) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased sensitivity to genotoxic stresses and agents that damage DNA bases (UV and methyl methanesulfonate, MMS). {ECO:0000269|PubMed:15978034}. This mutant does not differ visibly from a wild type plant when grown under normal conditions. A UV-B dose during the first week of growth on normal media affects the atrpa70b mutant and wild-type seedlings similarly although the mutants have an increased level of leaf yellowing. After a longer period of exposure to UV-B the level of chlorophyll A and B is reduced to a greater extent in rpa70b mutants than in wild-type and root growth is more inhibited in the mutants. Treatment with MMS also causes a greater inhibition of root growth in rpa70b mutants than in wild-type seedlings. In contrast the mutants show a wild-type level of sensitivity to H2O2 in root growth assays. FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (By similarity). {ECO:0000250}.,FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions (By similarity). Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (By similarity). {ECO:0000250}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174437;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696395;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-68962;R-ATH-69166; 70264,67289 Replication protein A 70 kDa DNA-binding subunit D (AtRPA70D) (AtRPA1-4) (Replication factor A protein 1D) (Replication protein A 1D) (AtRPA1D),Replication protein A 70 kDa DNA-binding subunit B (AtRPA70B) (AtRPA1-5) (Replication factor A protein 1B) (Replication protein A 1B) (AtRPA1B) nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; response to UV-B [GO:0010224] locus:2173527;,locus:2142808; AT5G61000,AT5G08020 replication protein A 70 kDa DNA-binding Replication protein A 70 kDa DNA-binding subunit B (OsRPA70b) (Replication factor A protein 1B) (Replication protein A 1B) Q10Q08 RFA1B_ORYSJ RPA1B RPA70B Os03g0214100 LOC_Os03g11540 OsJ_09906 FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (By similarity). {ECO:0000250, ECO:0000269|PubMed:15978034}. ENOG411E305 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ripening-related protein 3 Q9FWT5 RIP3_ORYSJ Os10g0490100 LOC_Os10g34840 B1288B10.12 OsJ_31982 OSJNBa0051D19.24 ENOG411E302 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRELI-like family Os09g0486000 protein A0A0P0XNF3 A0A0P0XNF3_ORYSJ Os09g0486000 OSNPB_090486000 ENOG411EEQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PH NA NA NA NA NA NA NA ENOG411EEQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ubiquitin specific peptidase Os11g0458500 protein,Os06g0680950 protein Q2R4X0,A0A0N7KML4 Q2R4X0_ORYSJ,A0A0N7KML4_ORYSJ Os11g0458500 LOC_Os11g27020 OSNPB_110458500,Os06g0680950 OSNPB_060680950 ENOG411EEQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GATA transcription factor family protein NA NA NA NA NA NA NA ENOG411EEQ0 Q9SZV1 Q9SZV1_ARATH At4g29980 (Fasciclin-like arabinogalactan protein) (Uncharacterized protein AT4g29980) (Uncharacterized protein F6G3.10) 18308 At4g29980 (Fasciclin-like arabinogalactan protein) (Uncharacterized protein AT4g29980) (Uncharacterized protein F6G3.10) locus:2126535; AT4G29980 NA NA NA NA NA NA NA NA ENOG411EEQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0474900 protein A0A0P0XVP7 A0A0P0XVP7_ORYSJ Os10g0474900 OSNPB_100474900 ENOG411EEQ2 AGL39 Q9C6K0,Q9LNG8,F4K2U3 Q9C6K0_ARATH,Q9LNG8_ARATH,F4K2U3_ARATH 2Fe-2S ferredoxin-like superfamily protein (Uncharacterized protein F8A12.3),F21D18.12 (MADS-box transcription factor family protein),AGAMOUS-like 39 36557,36477,34353 2Fe-2S ferredoxin-like superfamily protein (Uncharacterized protein F8A12.3),F21D18.12 (MADS-box transcription factor family protein),AGAMOUS-like 39 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055],nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2036376;,locus:2023741;,locus:2181226; AT1G50780,AT1G48150,AT5G27130 Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411EEQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411EEQ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EEQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sterol methyltransferase C-terminal NA NA NA NA NA NA NA ENOG411EEQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar sorting protein 9 (VPS9) domain NA NA NA NA NA NA NA ENOG411EEQA Q949S2 Q949S2_ARATH TPRXL (Uncharacterized protein At1g30750) 22213 TPRXL (Uncharacterized protein At1g30750) locus:2204589; AT1G30750 Inherit from NOG: G protein-coupled receptor associated sorting protein NA NA NA NA NA NA NA ENOG411EEQB HVA22E,HVA22D Q9FED2,Q9S760,B3H763,F4JRS2 HA22E_ARATH,HA22D_ARATH,B3H763_ARATH,F4JRS2_ARATH HVA22-like protein e (AtHVA22e),HVA22-like protein d (AtHVA22d),HVA22-like protein Reduced fertility-T. Ho-2009 13476,15753,12344,15865 HVA22-like protein e (AtHVA22e),HVA22-like protein d (AtHVA22d),HVA22-like protein integral component of membrane [GO:0016021]; hyperosmotic salinity response [GO:0042538]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to water deprivation [GO:0009414],integral component of membrane [GO:0016021]; flower development [GO:0009908]; hyperosmotic salinity response [GO:0042538]; negative regulation of autophagy [GO:0010507]; pollen development [GO:0009555]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to water deprivation [GO:0009414],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Predominantly expressed in stem. {ECO:0000269|PubMed:12081371}.,TISSUE SPECIFICITY: Predominantly expressed in flower buds. {ECO:0000269|PubMed:12081371}. locus:2163290;,locus:2117318; AT5G50720,AT4G24960 TB2/DP1 HVA22 family NA NA NA NA NA NA NA ENOG411EEQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCAMP family NA NA NA NA NA NA NA ENOG411EEQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411EEQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EEQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: pleckstrin homology domain containing family M NA NA NA NA NA NA NA ENOG411EEQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphotransferase enzyme family NA NA NA NA NA NA NA ENOG411EEQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease P NA NA NA NA NA NA NA ENOG411EEQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EEQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411EK93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain Os02g0742000 protein (Putative serine-threonine rich antigen),Os02g0742000 protein (Fragment) Q6Z7R3,A0A0P0VPE4 Q6Z7R3_ORYSJ,A0A0P0VPE4_ORYSJ P0516G10.37-1 P0585G03.15-1 Os02g0742000 OSNPB_020742000,Os02g0742000 OSNPB_020742000 ENOG411EK92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411EK90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavokinase NA NA NA NA NA NA NA ENOG411EK97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calmodulin-binding transcription activator 3-like NA NA NA NA NA NA NA ENOG411EK95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CG-1 domain NA NA NA NA NA NA NA ENOG411EK94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SWI SNF related matrix associated actin dependent regulator of chromatin subfamily a member Chromatin remodeling protein-like (Os06g0255200 protein),Os06g0255200 protein (Fragment) Q656M9,A0A0P0WUQ3 Q656M9_ORYSJ,A0A0P0WUQ3_ORYSJ P0592E11.17-2 Os06g0255200 OSNPB_060255200,Os06g0255200 OSNPB_060255200 ENOG411EK98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CG-1 domain NA NA NA NA NA NA NA ENOG411EK9C Q8RWF9 Q8RWF9_ARATH At2g21560 (RING/U-box superfamily protein) (Uncharacterized protein At2g21500) 46685 At2g21560 (RING/U-box superfamily protein) (Uncharacterized protein At2g21500) plasma membrane [GO:0005886] locus:2050110; AT2G21500 RING NA NA NA NA NA NA NA ENOG411EK9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF629) Os11g0599101 protein,Os09g0547900 protein A0A0P0Y493,A0A0P0XR78 A0A0P0Y493_ORYSJ,A0A0P0XR78_ORYSJ Os11g0599101 OSNPB_110599101,Os09g0547900 OSNPB_090547900 ENOG411EK9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EK9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EK9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EK9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EK9I A0A1P8B0M8,F4ISY9 A0A1P8B0M8_ARATH,F4ISY9_ARATH Sel1 repeat protein 14107,15019 Sel1 repeat protein locus:2057227; AT2G38450 SEL1 NA NA NA NA NA NA NA ENOG411EK9H Q8VYI7 Q8VYI7_ARATH At1g80610/T21F11_6 22975 At1g80610/T21F11_6 locus:2198933; AT1G80610 NA NA NA NA NA NA NA NA ENOG411EK9N Q6NLV9,A0A1I9LRP1 Q6NLV9_ARATH,A0A1I9LRP1_ARATH Sulfotransferase (EC 2.8.2.-) 2.8.2.- 39066,35916 Sulfotransferase (EC 2.8.2.-) integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; sulfotransferase activity [GO:0008146],hydrolase activity [GO:0016787]; sulfotransferase activity [GO:0008146] locus:2098710; AT3G50620 Sulfotransferase domain NA NA NA NA NA NA NA ENOG411EK9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK9S MRN17.22 Q9FFA9 Q9FFA9_ARATH C2H2-like zinc finger protein (C2H2-type zinc finger protein-like) 37312 C2H2-like zinc finger protein (C2H2-type zinc finger protein-like) nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2172716; AT5G22990 zinc finger NA NA NA NA NA NA NA ENOG411EK9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain NA NA NA NA NA NA NA ENOG411EK9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411EK9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411EK9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411EK9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EK9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EK9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DVUA Q6NM16,A0A1P8BGX1 Q6NM16_ARATH,A0A1P8BGX1_ARATH At5g27710 (T-box protein),T-box protein 37519,28288 At5g27710 (T-box protein),T-box protein locus:2180285; AT5G27710 NA Os07g0673000 protein (Fragment) Q0D3Q5 Q0D3Q5_ORYSJ Os07g0673000 Os07g0673000 OSNPB_070673000 ENOG411DVUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411DVUB Q9SZ14,Q9XII4 Q9SZ14_ARATH,Q9XII4_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g26730) (Uncharacterized protein F10M23.70),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g16030) 23681,25795 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g26730) (Uncharacterized protein F10M23.70),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g16030) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2116412;,locus:2052936; AT4G26730,AT2G16030 NA Os05g0500700 protein (Fragment) A0A0P0WPC3 A0A0P0WPC3_ORYSJ Os05g0500700 OSNPB_050500700 ENOG411DVUE WAT1 Q94AP3 WAT1_ARATH Protein WALLS ARE THIN 1 DISRUPTION PHENOTYPE: In stems, defect in cell elongation resulting in dwarf and bushy plants with altered mechanical properties, as well as little to no secondary cell walls in fibers, including xylary and interfascicular fibers; these symptoms are partly reversed by continuous light conditions. At the flowering stage, red, dry and bent downwards stem apices. General repression of indole metabolism, including tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid). Broad-spectrum resistance to vascular pathogens, including the bacteria Ralstonia solanacearum and Xanthomonas campestris pv. campestris, and the fungi Verticillium dahliae and Verticillium albo-atrum in a salicylic-acid- (SA-) dependent manner. SA accumulation in roots. {ECO:0000269|PubMed:20497379, ECO:0000269|PubMed:20935503, ECO:0000269|PubMed:22978675}. Short inflorescences and decreased secondary cell wall thickness under short days-D. Goffner-2010 FUNCTION: Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation. {ECO:0000269|PubMed:20497379, ECO:0000269|PubMed:20935503, ECO:0000269|PubMed:22978675}. 42571 Protein WALLS ARE THIN 1 integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; transmembrane transporter activity [GO:0022857]; auxin biosynthetic process [GO:0009851]; auxin efflux [GO:0010315]; auxin-activated signaling pathway [GO:0009734]; cell wall organization [GO:0071555]; defense response [GO:0006952]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of auxin metabolic process [GO:0090355]; positive regulation of tryptophan metabolic process [GO:0090358]; tryptophan biosynthetic process [GO:0000162]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Mostly expressed in stems and hypocotyls, also present in seedlings, root, leaves, flowers and siliques. Ubiquitous, mostly expressed in vascular tissues and secondary wall-forming cells, including developing xylem vessels and fibers. {ECO:0000269|PubMed:20497379}. locus:2005689; AT1G75500 Auxin-induced protein WAT1-related protein Q6YYY7 Q6YYY7_ORYSJ P0604E01.39 Os08g0561500 OSNPB_080561500 ENOG411DVUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0454100 protein (Fragment) A0A0N7KND7 A0A0N7KND7_ORYSJ Os07g0454100 OSNPB_070454100 ENOG411DVUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene insensitive 3 Os04g0456900 protein A0A0P0WB01 A0A0P0WB01_ORYSJ Os04g0456900 OSNPB_040456900 ENOG411DVUF A0A1I9LRG5,Q9MBG4,A0A1I9LRG7 A0A1I9LRG5_ARATH,Q9MBG4_ARATH,A0A1I9LRG7_ARATH Biotin/lipoate A/B protein ligase family,Biotin/lipoate A/B protein ligase family (Lipoate protein ligase-like protein) 22297,30163,22976 Biotin/lipoate A/B protein ligase family,Biotin/lipoate A/B protein ligase family (Lipoate protein ligase-like protein) ligase activity [GO:0016874]; cellular protein modification process [GO:0006464] locus:2087007; AT3G29010 Biotin/lipoate A/B protein ligase family Lipoate-protein ligase A (Lipoate-protein ligase A-like) (Os08g0435800 protein) (cDNA clone:J033078H12, full insert sequence) Q6YWJ8 Q6YWJ8_ORYSJ LPLA Os08g0435800 OSNPB_080435800 P0413H11.33 ENOG411DVUK O82306,F4ITJ6 O82306_ARATH,F4ITJ6_ARATH 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (At2g25910/F17H15.6) (Expressed protein),3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein 38388,38475 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (At2g25910/F17H15.6) (Expressed protein),3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein 3'-5' exonuclease activity [GO:0008408]; RNA binding [GO:0003723] locus:2043555; AT2G25910 3-5 exonuclease Os01g0566900 protein (Fragment) A0A0P0V4C6 A0A0P0V4C6_ORYSJ Os01g0566900 OSNPB_010566900 ENOG411DVUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ Os05g0463300 protein (Fragment) A0A0P0WNG8 A0A0P0WNG8_ORYSJ Os05g0463300 OSNPB_050463300 ENOG411DVUQ Q8GWB1 Q8GWB1_ARATH RING/U-box superfamily protein (Uncharacterized protein At3g19895) 59695 RING/U-box superfamily protein (Uncharacterized protein At3g19895) locus:504955744; AT3G19895 NA Os02g0829600 protein Q6K9T7 Q6K9T7_ORYSJ OJ1124_D06.12-1 Os02g0829600 OSNPB_020829600 ENOG411DVUS Q9SIE6,F4JW60 Q9SIE6_ARATH,F4JW60_ARATH Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At2g22180),Hydroxyproline-rich glycoprotein family protein 32206,27379 Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At2g22180),Hydroxyproline-rich glycoprotein family protein integral component of membrane [GO:0016021] locus:2060400;,locus:504955357; AT2G22180,AT4G39745 NA Expressed protein (Os03g0191800 protein) Q10QM2 Q10QM2_ORYSJ Os03g0191800 LOC_Os03g09160 OSNPB_030191800 ENOG411DVUR BPC6 Q8L999,A8MQG2 BPC6_ARATH,A8MQG2_ARATH Protein BASIC PENTACYSTEINE6 (AtBPC6) (GAGA-binding transcriptional activator BBR/BPC6),Basic pentacysteine 6 FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. 38239,31518 Protein BASIC PENTACYSTEINE6 (AtBPC6) (GAGA-binding transcriptional activator BBR/BPC6),Basic pentacysteine 6 nucleolus [GO:0005730]; nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. locus:2162291; AT5G42520 GAGA-binding transcriptional activator Barley B recombinant-like protein D (BBR-like protein D) (GAGA-binding transcriptional activator BBR-D) Q5VSA8 BBRD_ORYSJ Os06g0130600 LOC_Os06g04010 P0493C11.7 FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. ENOG411DVUU AILP1 Q94BR2,A0A1P8B9Q2,F4JZM6 Q94BR2_ARATH,A0A1P8B9Q2_ARATH,F4JZM6_ARATH Aluminum induced protein with YGL and LRDR motifs (Putative aluminium-induced protein),Aluminum induced protein with YGL and LRDR motifs 25015,21496,23868 Aluminum induced protein with YGL and LRDR motifs (Putative aluminium-induced protein),Aluminum induced protein with YGL and LRDR motifs plasma membrane [GO:0005886] locus:2182137; AT5G19140 Stem-specific protein Os12g0145100 protein (Seed developmental stage protein) (Stem-specific protein TSJT1, putative, expressed) (cDNA clone:001-034-F10, full insert sequence) (cDNA clone:006-202-B06, full insert sequence) (cDNA clone:J013095J21, full insert sequence),Os11g0147800 protein (Stem-specific protein) (Stem-specific protein TSJT1, putative, expressed) (cDNA clone:001-039-G04, full insert sequence) (cDNA clone:006-211-B05, full insert sequence) (cDNA clone:J023109H06, full insert sequence),Os11g0204800 protein (Fragment),Os11g0147800 protein Q2QXS4,Q2RAK8,Q0IU00,A0A0P0XYT9 Q2QXS4_ORYSJ,Q2RAK8_ORYSJ,Q0IU00_ORYSJ,A0A0P0XYT9_ORYSJ Os12g0145100 LOC_Os12g05050 Os12g0145100 OsJ_35204 OSNPB_120145100,Os11g0147800 LOC_Os11g05050 Os11g0147800 OsJ_32962 OSNPB_110147800,Os11g0204800 OSNPB_110204800,Os11g0147800 OSNPB_110147800 ENOG411DVUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os02g0810900 protein (Putative NAC domain protein NAC1) (cDNA clone:006-202-E09, full insert sequence) (cDNA clone:J023075A01, full insert sequence) Q6K5X2 Q6K5X2_ORYSJ Os02g0810900 Os02g0810900 OJ1116_E04.11 OsJ_08821 OSNPB_020810900 P0016F11.3 ENOG411DVUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA growth-regulating factor Growth-regulating factor 6 (OsGRF6) (Transcription activator GRF6),Growth-regulating factor 7 (OsGRF7) (Transcription activator GRF7),Os12g0484900 protein (Fragment),Os03g0729500 protein Q6AWY3,Q6AWY2,A0A0P0YA26,A0A0P0W366 GRF6_ORYSJ,GRF7_ORYSJ,A0A0P0YA26_ORYSJ,A0A0P0W366_ORYSJ GRF6 Os03g0729500 LOC_Os03g51970 OsJ_12442 OSJNBb0011H13.8,GRF7 Os12g0484900 LOC_Os12g29980 OsJ_36104,Os12g0484900 OSNPB_120484900,Os03g0729500 OSNPB_030729500 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411DVUV OASB,OASC P47999,Q43725,B9DFR6,F4J9F7 CYSKP_ARATH,CYSKM_ARATH,B9DFR6_ARATH,F4J9F7_ARATH Cysteine synthase, chloroplastic/chromoplastic (EC 2.5.1.47) (At.OAS.7-4) (Beta-substituted Ala synthase 2;1) (ARAth-Bsas2;1) (CSase B) (AtCS-B) (CS-B) (O-acetylserine (thiol)-lyase) (O-acetylserine sulfhydrylase) (OAS-TL B) (cpACS1),Cysteine synthase, mitochondrial (EC 2.5.1.47) (Beta-substituted Ala synthase 2;2) (ARAth-Bsas2;2) (CSase C) (AtCS-C) (CS-C) (O-acetylserine (thiol)-lyase) (O-acetylserine sulfhydrylase) (OAS-TL C),Cysteine synthase (EC 2.5.1.47) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:18223034}.,DISRUPTION PHENOTYPE: No visible phenotype but displays lower levels of thiols in roots (PubMed:18024555). Growth retardation (PubMed:18223034). Defects in root hair formation (PubMed:22511607). {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:18223034, ECO:0000269|PubMed:22511607}. FUNCTION: Acts as a major cysteine synthase. {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:18223034}.,FUNCTION: Acts as a cysteine synthase. Plays a role in the sulfide detoxification in mitochondria. {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:18223034, ECO:0000269|PubMed:22511607}. PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 2/2. MetaCyc:AT2G43750-MONOMER;,MetaCyc:AT3G59760-MONOMER; 2.5.1.47 41656,45815,46115,46087 Cysteine synthase, chloroplastic/chromoplastic (EC 2.5.1.47) (At.OAS.7-4) (Beta-substituted Ala synthase 2;1) (ARAth-Bsas2;1) (CSase B) (AtCS-B) (CS-B) (O-acetylserine (thiol)-lyase) (O-acetylserine sulfhydrylase) (OAS-TL B) (cpACS1),Cysteine synthase, mitochondrial (EC 2.5.1.47) (Beta-substituted Ala synthase 2;2) (ARAth-Bsas2;2) (CSase C) (AtCS-C) (CS-C) (O-acetylserine (thiol)-lyase) (O-acetylserine sulfhydrylase) (OAS-TL C),Cysteine synthase (EC 2.5.1.47) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chromoplast [GO:0009509]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; plastid [GO:0009536]; trans-Golgi network [GO:0005802]; cysteine synthase activity [GO:0004124]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535]; double fertilization forming a zygote and endosperm [GO:0009567]; pollen tube growth [GO:0009860]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735],mitochondrion [GO:0005739]; cysteine synthase activity [GO:0004124]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cysteine biosynthetic process from serine [GO:0006535],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cysteine synthase activity [GO:0004124]; transferase activity [GO:0016740]; zinc ion binding [GO:0008270]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535]; double fertilization forming a zygote and endosperm [GO:0009567]; pollen tube development [GO:0048868]; pollen tube growth [GO:0009860],cysteine synthase activity [GO:0004124]; transferase activity [GO:0016740]; cysteine biosynthetic process from serine [GO:0006535] locus:2043964;,locus:2080417; AT2G43750,AT3G59760 cysteine synthase Cysteine synthase (EC 2.5.1.47) Q5JNB0 Q5JNB0_ORYSJ Os01g0978100 OsJ_04976 OSNPB_010978100 P0020E09.29 ENOG411DVUY CSE Q9C942 CSE_ARATH Caffeoylshikimate esterase (EC 3.1.1.-) (Lysophospholipase 2) (LysoPL2) DISRUPTION PHENOTYPE: Reduced height and weight of senescent plants due to reduced lignin content. {ECO:0000269|PubMed:23950498}. Sensitive to zinc and hydrogen peroxide-M. Chye-2010 FUNCTION: Esterase involved in the biosynthesis of lignin. Hydrolyzes caffeoylshikimate into caffeate and shikimate. Together with 4-coumarate--CoA ligase (4CL), acts on an alternative reaction for the formation of caffeoyl-CoA and bypasses the second reaction of shikimate O-hydroxycinnamoyltransferase (HST). Accepts also 4-coumaroylshikimate as substrate, but with lower activity. According to PubMed:20345607 and PubMed:22915575, posseses monoacylglycerol O-acyltransferase, monoacylglycerol lipase and lysophospholipase activities in vitro. With the association of ACBP2, may promote the degradation of lysophosphatidylcholine and detoxify the peroxidized membrane in response to cadmium-induced oxidative stress. However these results require additional confirmation in vivo. {ECO:0000269|PubMed:20345607, ECO:0000269|PubMed:20657176, ECO:0000269|PubMed:22915575, ECO:0000269|PubMed:23950498}. MISCELLANEOUS: Mutant plants exhibit increased sensitivity to zinc, cadmium and H(2)O(2). {ECO:0000305|PubMed:20345607}. 3.1.1.- 36975 Caffeoylshikimate esterase (EC 3.1.1.-) (Lysophospholipase 2) (LysoPL2) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 2-acylglycerol O-acyltransferase activity [GO:0003846]; caffeoyl-CoA: alcohol caffeoyl transferase activity [GO:0090430]; hydrolase activity [GO:0016787]; lysophospholipase activity [GO:0004622]; lignin biosynthetic process [GO:0009809]; lipid metabolic process [GO:0006629]; response to cadmium ion [GO:0046686]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to zinc ion [GO:0010043] TISSUE SPECIFICITY: Expressed in vasculature of roots and leaves, stems, flowers and siliques. {ECO:0000269|PubMed:20345607, ECO:0000269|PubMed:23950498}. locus:2011511; AT1G52760 Putative lysophospholipase Os02g0207900 protein A0A0P0VG76 A0A0P0VG76_ORYSJ Os02g0207900 OSNPB_020207900 ENOG411DVUX WNK11 Q6ICW6 WNK11_ARATH Probable serine/threonine-protein kinase WNK11 (AtWNK11) (EC 2.7.11.1) (Protein kinase with no lysine 11) FUNCTION: May regulate flowering time by modulating the photoperiod pathway. {ECO:0000250}. 2.7.11.1 35531 Probable serine/threonine-protein kinase WNK11 (AtWNK11) (EC 2.7.11.1) (Protein kinase with no lysine 11) cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2176135; AT5G55560 serine threonine-protein kinase Probable serine/threonine-protein kinase WNK5 (OsWNK5) (EC 2.7.11.1) (Protein kinase with no lysine 5) Q0D541 WNK5_ORYSJ WNK5 Os07g0584100 LOC_Os07g39520 OJ1127_E01.120 OsJ_023934 ENOG411DVUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family Os08g0159100 protein (Senescence-associated protein-like) (cDNA clone:J023035K06, full insert sequence) (cDNA clone:J023064O03, full insert sequence) Q7EZC8 Q7EZC8_ORYSJ P0498E12.115 Os08g0159100 OsJ_26119 OSNPB_080159100 ENOG411DVU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os03g0211500 protein A0A0P0VUS0 A0A0P0VUS0_ORYSJ Os03g0211500 OSNPB_030211500 ENOG411DVU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0479500 protein (cDNA clone:001-124-E06, full insert sequence),Os05g0575400 protein (cDNA clone:J013103C07, full insert sequence),Os04g0479800 protein,Os01g0774200 protein (cDNA clone:J013092B14, full insert sequence),Os09g0502600 protein B7EXZ6,Q6F371,Q0JCC6,Q5ZC06,A0A0P0XNQ7 B7EXZ6_ORYSJ,Q6F371_ORYSJ,Q0JCC6_ORYSJ,Q5ZC06_ORYSJ,A0A0P0XNQ7_ORYSJ Os04g0479500 OSNPB_040479500,Os05g0575400 Os05g0575400 OJ1268_B08.16 OSNPB_050575400,Os04g0479800 Os04g0479800 OSNPB_040479800,Os01g0774200 OSNPB_010774200 P0490D09.25,Os09g0502600 OSNPB_090502600 ENOG411DVU4 CPL3 Q8LL04,A0A1P8B2G0 CPL3_ARATH,A0A1P8B2G0_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 (FCP-like 3) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 3) (AtCPL3) (CTD phosphatase-like 3),C-terminal domain phosphatase-like 3 DISRUPTION PHENOTYPE: Grows more slowly and flower earlier than wild-type plants. ABA hyperactivation of stress-inducible genes. {ECO:0000269|PubMed:12149434, ECO:0000269|PubMed:16905668}. Slow growth; Early flowering-P. Hasegawa-2002 FUNCTION: Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance. {ECO:0000250, ECO:0000269|PubMed:12149434, ECO:0000269|PubMed:16905668}. R-ATH-113418;R-ATH-674695;R-ATH-6796648; 3.1.3.16 136479,108381 RNA polymerase II C-terminal domain phosphatase-like 3 (FCP-like 3) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 3) (AtCPL3) (CTD phosphatase-like 3),C-terminal domain phosphatase-like 3 DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; metal ion binding [GO:0046872]; protein C-terminus binding [GO:0008022]; RNA binding [GO:0003723]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; phosphoprotein phosphatase activity [GO:0004721] locus:2051164; AT2G33540 RNA polymerase II C-terminal domain phosphatase-like Os02g0796000 protein (Phosphatase-like),Os11g0521900 protein (Fragment) Q6K8Y2,A0A0P0Y2Y0,A0A0P0Y2X9,A0A0P0Y2R3 Q6K8Y2_ORYSJ,A0A0P0Y2Y0_ORYSJ,A0A0P0Y2X9_ORYSJ,A0A0P0Y2R3_ORYSJ Os02g0796000 OJ1004_E04.5 OJ1695_H09.20 OsJ_08715 OSNPB_020796000,Os11g0521900 OSNPB_110521900 ENOG411DVU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0117200 protein,Hydrolase, alpha/beta fold family protein, expressed (Os11g0118000 protein) Q0IQJ8,Q2RBB3 Q0IQJ8_ORYSJ,Q2RBB3_ORYSJ Os12g0117200 Os12g0117200 OSNPB_120117200,Os11g0118000 LOC_Os11g02580 Os11g0118000 OSNPB_110118000 ENOG411DVU8 PCMP-H51 Q0WQW5 PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial (Protein CHLORORESPIRATORY REDUCTION 28) DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity. {ECO:0000269|PubMed:19182104}. FUNCTION: Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 2 of ndhB (ndhB-2) and site 3 of ndhD (ndhD-3) transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Required for the activity of the NDH complex of the photosynthetic electron transport chain. {ECO:0000269|PubMed:19182104}. MISCELLANEOUS: The DYW motif is dispensable for editing activity in vivo. {ECO:0000269|PubMed:19182104}. 71960 Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial (Protein CHLORORESPIRATORY REDUCTION 28) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425]; mRNA modification [GO:0016556]; mRNA processing [GO:0006397] locus:2025946; AT1G59720 Pentatricopeptide repeat-containing protein At1g59720 Os07g0191500 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6Z4H7 Q6Z4H7_ORYSJ Os07g0191500 OSJNBa0049I08.5 OSJNBb0003E08.37 OSNPB_070191500 ENOG411E30I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0571166 protein,Os01g0571100 protein (Fragment) A0A0P0V4A6,A0A0P0V486 A0A0P0V4A6_ORYSJ,A0A0P0V486_ORYSJ Os01g0571166 OSNPB_010571166,Os01g0571100 OSNPB_010571100 ENOG411E30K NKS1 Q94AM8,Q9ZQ38 Q94AM8_ARATH,Q9ZQ38_ARATH Ubiquitin-associated protein (DUF1068) (Uncharacterized protein At4g30996),Expressed protein (Ubiquitin-associated protein (DUF1068)) (Uncharacterized protein At2g24290) 19115,19240 Ubiquitin-associated protein (DUF1068) (Uncharacterized protein At4g30996),Expressed protein (Ubiquitin-associated protein (DUF1068)) (Uncharacterized protein At2g24290) endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; hyperosmotic salinity response [GO:0042538]; vacuolar sequestering of sodium ion [GO:0043182] locus:505006538;,locus:2061027; AT4G30996,AT2G24290 Protein of unknown function (DUF1068) OSJNBa0029H02.27 protein (Os04g0501800 protein) Q0JBZ1 Q0JBZ1_ORYSJ Os04g0501800 OSJNBa0029H02.27 Os04g0501800 OsJ_15356 OSNPB_040501800 ENOG411E30F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os03g0197900 protein (cDNA clone:002-175-F02, full insert sequence) Q10QG0 Q10QG0_ORYSJ Os03g0197900 LOC_Os03g10150 Os03g0197900 OSNPB_030197900 ENOG411E30B MWD22.5 Q9LU63,F4KBV0 Q9LU63_ARATH,F4KBV0_ARATH At5g51110/MWD22_5 (PCD/DCoH-like protein 1) (Transcriptional coactivator/pterin dehydratase) (Uncharacterized protein At5g51110),Transcriptional coactivator/pterin dehydratase FUNCTION: Involved in tetrahydrobiopterin biosynthesis (By similarity). Interacts with and acts downstream of the E3 ubiquitin-protein ligase SDIR1 in abscisic acid (ABA) and salt stress signaling. Regulates the expression of the bZIP transcription factor ABI5, which mediates responses to ABA during seed germination and salt stress. The SDIR1-ATP1/SDIRIP1 complex plays an important role in ABA signaling through the ubiquitination pathway (PubMed:25616872). Acts downstream of AIRP2 in regulation of ABA signaling during drought stress (PubMed:28626006). {ECO:0000250|UniProtKB:P61457, ECO:0000269|PubMed:25616872, ECO:0000269|PubMed:28626006}. 23897,20908 At5g51110/MWD22_5 (PCD/DCoH-like protein 1) (Transcriptional coactivator/pterin dehydratase) (Uncharacterized protein At5g51110),Transcriptional coactivator/pterin dehydratase chloroplast [GO:0009507]; 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [GO:0008124]; tetrahydrobiopterin biosynthetic process [GO:0006729],4-alpha-hydroxytetrahydrobiopterin dehydratase activity [GO:0008124]; tetrahydrobiopterin biosynthetic process [GO:0006729] locus:2176182; AT5G51110 Pterin 4 alpha carbinolamine dehydratase Expressed protein (Os03g0100200 protein) (cDNA clone:001-125-G06, full insert sequence) (cDNA clone:J023131F13, full insert sequence) Q10T66 Q10T66_ORYSJ LOC_Os03g01030 Os03g0100200 OsJ_09047 OSNPB_030100200 ENOG411E30C GLP1 P92995,Q9LMC9 GLT1_ARATH,GLT2_ARATH Germin-like protein subfamily T member 1,Germin-like protein subfamily T member 2 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 23214,23184 Germin-like protein subfamily T member 1,Germin-like protein subfamily T member 2 apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2011291;,locus:2011306; AT1G18970,AT1G18980 germin-like protein NA NA NA NA NA NA NA ENOG411E30X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SERPINE1 mRNA binding protein 1 Os03g0845300 protein,Os03g0845300 protein (Fragment) A0A0P0W5H7,A0A0P0W6C2 A0A0P0W5H7_ORYSJ,A0A0P0W6C2_ORYSJ Os03g0845300 OSNPB_030845300 ENOG411EF3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Penicillin binding protein transpeptidase domain NA NA NA NA NA NA NA ENOG411EF3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family E3 ubiquitin-protein ligase (EC 2.3.2.27) A0A0P0WI58 A0A0P0WI58_ORYSJ Os05g0152600 OSNPB_050152600 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411EF3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3F5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY DNA binding domain containing protein Os11g0116600 protein A0A0P0XYN6 A0A0P0XYN6_ORYSJ Os11g0116600 OSNPB_110116600 ENOG411E1YI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os10g0167500 protein A0A0P0XT31 A0A0P0XT31_ORYSJ Os10g0167500 OSNPB_100167500 ENOG411E1YU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411DZWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os07g0693600 protein Q0D3C8 Q0D3C8_ORYSJ Os07g0693600 Os07g0693600 OsJ_25693 OSNPB_070693600 ENOG411EF39 OFP11 O23341 OFP11_ARATH Transcription repressor OFP11 (Ovate family protein 11) (AtOFP11) FUNCTION: Transcriptional repressor that may regulate multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP11 have no visible phenotype. {ECO:0000305|PubMed:21886836}. 20678 Transcription repressor OFP11 (Ovate family protein 11) (AtOFP11) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2130399; AT4G14860 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E6SK STR18 Q9FKW8,A8MS23,F4JZ39 STR18_ARATH,A8MS23_ARATH,F4JZ39_ARATH Thiosulfate sulfurtransferase 18 (EC 2.8.1.1) (Sulfurtransferase 18) (AtStr18),Sulfurtransferase 18 FUNCTION: Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate. {ECO:0000269|PubMed:12482606}. 2.8.1.1; 2.8.1.1 14883,14706,15069 Thiosulfate sulfurtransferase 18 (EC 2.8.1.1) (Sulfurtransferase 18) (AtStr18),Sulfurtransferase 18 cytoplasm [GO:0005737]; thiosulfate sulfurtransferase activity [GO:0004792],transferase activity [GO:0016740] locus:2156882; AT5G66170 Rhodanese-like domain Os02g0102300 protein Q0E4S8 Q0E4S8_ORYSJ Os02g0102300 Os02g0102300 OSNPB_020102300 ENOG411E6SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os03g0808500 protein (Protease inhibitor/seed storage/LTP family protein, expressed) Q10BQ3 Q10BQ3_ORYSJ Os03g0808500 LOC_Os03g59380 Os03g0808500 OSNPB_030808500 ENOG411E6SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411E6SD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E6SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E6SF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0564200 protein Q7F2A8 Q7F2A8_ORYSJ OJ1112_E08.106 OJ1720_F04.119 Os07g0564200 OsJ_24754 OSNPB_070564200 ENOG411E6SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: O-acetyltransferase NA NA NA NA NA NA NA ENOG411E6SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) Non-specific lipid-transfer protein 4 (LTP 4),Non-specific lipid-transfer protein O65091,Q0IV40,Q6EUA8 NLTP4_ORYSJ,Q0IV40_ORYSJ,Q6EUA8_ORYSJ Os12g0114500 LOC_Os12g02290,Os11g0114900 OSNPB_110114900,Os02g0445300 OJ1116_C12.15 OsJ_06561 OSNPB_020445300 FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.,FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. {ECO:0000256|RuleBase:RU000628}. ENOG411E6SP GRF9 Q8S9M3,A0A1P8AYT9 GRF9_ARATH,A0A1P8AYT9_ARATH Growth-regulating factor 9 (AtGRF9) (Transcription activator GRF9),Growth-regulating factor 9 FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}. 48867,35108 Growth-regulating factor 9 (AtGRF9) (Transcription activator GRF9),Growth-regulating factor 9 nucleus [GO:0005634]; ATP binding [GO:0005524]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ATP binding [GO:0005524]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. TISSUE SPECIFICITY: Detected in the shoot apical meristem (SAM) and in young leaf primordium. {ECO:0000269|PubMed:15960617, ECO:0000269|PubMed:21036927}. locus:2043595; AT2G45480 WRC NA NA NA NA NA NA NA ENOG411E6SU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0111400 protein) (cDNA clone:001-109-C08, full insert sequence),Expressed protein (Os11g0111800 protein) Q2QYP2,A3C7W7 Q2QYP2_ORYSJ,A3C7W7_ORYSJ Os12g0111400 LOC_Os12g02020 Os12g0111400 OSNPB_120111400,Os11g0111800 LOC_Os11g02054 OsJ_32687 OSNPB_110111800 ENOG411E6SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os11g0179300 protein Q53NP5 Q53NP5_ORYSJ Os11g0179300 LOC_Os11g07700 OsJ_33175 OSNPB_110179300 ENOG411E6SW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Polyadenylate-binding protein-interacting protein NA NA NA NA NA NA NA ENOG411E6S8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0627500 protein (Fragment) A0A0P0X922 A0A0P0X922_ORYSJ Os07g0627500 OSNPB_070627500 ENOG411E6S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E6S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411E6S1 O82319 O82319_ARATH Uncharacterized protein At2g25780 17417 Uncharacterized protein At2g25780 locus:2043550; AT2G25780 Protein of unknown function (DUF1677) NA NA NA NA NA NA NA ENOG411E6S2 F3C22_190 Q9LXI6 Q9LXI6_ARATH At3g52790 (Peptidoglycan-binding LysM domain-containing protein) (Uncharacterized protein At3g52790) (Uncharacterized protein F3C22_190) 12181 At3g52790 (Peptidoglycan-binding LysM domain-containing protein) (Uncharacterized protein At3g52790) (Uncharacterized protein F3C22_190) integral component of membrane [GO:0016021] locus:2083293; AT3G52790 LysM domain NA NA NA NA NA NA NA ENOG411E6S3 Q3EDG6 Q3EDG6_ARATH Expressed protein 16461 Expressed protein locus:1006230778; AT1G07985 Inherit from KOG: Protein phosphatase 6 regulatory subunit NA NA NA NA NA NA NA ENOG411E6S4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411E6S5 FHY1 Q8S4Q6 FHY1_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 1 (Protein PHYTOCHROME A SIGNAL TRANSDUCTION 3) DISRUPTION PHENOTYPE: Partially blind to far-red (FR) (PubMed:15469493, PubMed:11711433, PubMed:11726703, PubMed:19482971, PubMed:16045472). Impaired inhibition of hypocotyl elongation and cotyledons expansion under continuous FR light conditions (PubMed:11711433, PubMed:11726703, PubMed:8364355, PubMed:22582101, PubMed:19482971, PubMed:16045472). Absence of FR-induced killing response (PubMed:11726703). Increased seed germination rate in salt stress conditions (PubMed:25071219). In plants lacking FHY1 and FHL, altered phototropism (e.g. phototropic bending) associated with abnormal consitutive cytosolic localization of PHYA (PubMed:22374392, PubMed:17566111). In the double mutant fhl fhy1 several PHYA-dependent phototropic responses are altered (e.g. hypocotyl elongation and cotyledon opening under high-irradiance conditions and seed germination under very-low-fluence conditions), but not for some PHYA-dependent responses such as the abrogation of negative gravitropism in blue light and red-enhanced phototropism (PubMed:17566111). Hyposensitivity to blue light (B) (PubMed:16045472). {ECO:0000269|PubMed:11711433, ECO:0000269|PubMed:11726703, ECO:0000269|PubMed:15469493, ECO:0000269|PubMed:16045472, ECO:0000269|PubMed:17566111, ECO:0000269|PubMed:19482971, ECO:0000269|PubMed:22374392, ECO:0000269|PubMed:22582101, ECO:0000269|PubMed:25071219, ECO:0000269|PubMed:8364355}. FUNCTION: Key regulator of far red / red (FR/R) spectrum-specific responses essential for the adaption to changing light conditions (e.g. de-etiolation), essentially by regulating PHYA shuttling from the cytoplasm to the nucleus and by directly regulating the expression of some target genes, depending on light conditions and phosphorylation status (PubMed:22582101). Binds chromatin at target genes promoters, especially in FR light conditions (PubMed:25071219). Can activate transcription of different genes, some being in a phytochrome A (PHYA)-dependent and other in a PHYA-independent manners (PubMed:15469493, PubMed:11726703, PubMed:25071219). Controls specific aspects of plant development, such as the inhibition of seed germination under FR during salt stress (PubMed:25071219). Essential for light-regulated PHYA nuclear accumulation and subsequent PHYA phototropic signaling processes involved in photomorphogenesis (PubMed:17566111, PubMed:21969386, PubMed:25071219, PubMed:22374392, PubMed:19482971). Mediates the association of PHYA with HFR1 and LAF1 in the nucleus in response to FR conditions (PubMed:19482971). PHYA-specific signal transducer in response to continuous FR lights (PubMed:15469493, PubMed:16045472, PubMed:19482971, PubMed:11711433, PubMed:11726703, PubMed:8364355). Contributes to inhibition of hypocotyl elongation in continuous blue light (B) (PubMed:16045472). {ECO:0000269|PubMed:11711433, ECO:0000269|PubMed:11726703, ECO:0000269|PubMed:15469493, ECO:0000269|PubMed:16045472, ECO:0000269|PubMed:17566111, ECO:0000269|PubMed:19482971, ECO:0000269|PubMed:21969386, ECO:0000269|PubMed:22374392, ECO:0000269|PubMed:22582101, ECO:0000269|PubMed:25071219, ECO:0000269|PubMed:8364355}. 23013 Protein FAR-RED ELONGATED HYPOCOTYL 1 (Protein PHYTOCHROME A SIGNAL TRANSDUCTION 3) cytoplasm [GO:0005737]; nuclear body [GO:0016604]; nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; chromatin silencing by small RNA [GO:0031048]; maintenance of protein location in nucleus [GO:0051457]; photomorphogenesis [GO:0009640]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of response to salt stress [GO:1901000]; regulation of seed germination [GO:0010029]; response to absence of light [GO:0009646]; response to far red light [GO:0010218]; response to light stimulus [GO:0009416]; response to red light [GO:0010114]; response to red or far red light [GO:0009639]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates in young seedlings with a peak three days after seed germination (PubMed:11726703). Mostly abundant in young seedlings grown in darkness, but quickly down-regulated during further seedling development and by light exposure (at protein level) (PubMed:16244150). {ECO:0000269|PubMed:11726703, ECO:0000269|PubMed:16244150}. TISSUE SPECIFICITY: Expressed in hypocotyl cells of etiolated plants. {ECO:0000269|PubMed:11711433, ECO:0000269|PubMed:11726703}. locus:4010713689; AT2G37678 Far-red elongated hypocotyl 1 NA NA NA NA NA NA NA ENOG411E6S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain Os06g0636000 protein,Os06g0160500 protein Q67V18,A0A0P0WTB3 Q67V18_ORYSJ,A0A0P0WTB3_ORYSJ OSJNBa0019I19.46 Os06g0636000 OSNPB_060636000,Os06g0160500 OSNPB_060160500 ENOG411E6S7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0536932 protein,Os07g0536300 protein (Fragment) B9FXN6,A0A0P0X6Y2 B9FXN6_ORYSJ,A0A0P0X6Y2_ORYSJ Os07g0536932 OsJ_24573 OSNPB_070536932,Os07g0536300 OSNPB_070536300 ENOG411E3FR Q8LG79 Q8LG79_ARATH AWPM-19-like family protein (Plasma membrane associated protein-like) 18019 AWPM-19-like family protein (Plasma membrane associated protein-like) integral component of membrane [GO:0016021] locus:2179639; AT5G18970 AWPM-19-like membrane family protein Os05g0400500 protein (Fragment) Q0DIC8 Q0DIC8_ORYSJ Os05g0400500 Os05g0400500 OSNPB_050400500 ENOG411E3FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0785600 protein (cDNA clone:002-181-B12, full insert sequence) Q5ZAM6 Q5ZAM6_ORYSJ Os01g0785600 Os01g0785600 B1070A12.28 OsJ_03708 OSNPB_010785600 ENOG411E3FK P93828,A0A1P8APX5 P93828_ARATH,A0A1P8APX5_ARATH F19P19.27 protein (Thioesterase superfamily protein),Thioesterase superfamily protein R-ATH-77289; 16887,13835 F19P19.27 protein (Thioesterase superfamily protein),Thioesterase superfamily protein cytoplasm [GO:0005737]; peroxisome [GO:0005777]; acyl-CoA hydrolase activity [GO:0047617] locus:2018294; AT1G04290 thioesterase NA NA NA NA NA NA NA ENOG411E3FI Q9FLX3 FB293_ARATH F-box protein At5g52880 30704 F-box protein At5g52880 ubiquitin ligase complex [GO:0000151]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2176872; AT5G52880 F-box protein Os05g0526300 protein (cDNA clone:J013020D09, full insert sequence),Os05g0526300 protein Q65X90,A0A0P0WPR5 Q65X90_ORYSJ,A0A0P0WPR5_ORYSJ Os05g0526300 OJ1593_C11.12 OSNPB_050526300,Os05g0526300 OSNPB_050526300 ENOG411E3FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0664700 protein (cDNA clone:001-034-H05, full insert sequence),Os02g0664700 protein (cDNA clone:J013020D20, full insert sequence) Q6ESI2,B7EAY8 Q6ESI2_ORYSJ,B7EAY8_ORYSJ P0461B08.8-1 Os02g0664700 OsJ_07843 OSNPB_020664700,Os02g0664700 OSNPB_020664700 ENOG411E3FA TATB Q9XH75 TATB_ARATH Sec-independent protein translocase protein TATB, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 106) (Protein TWIN-ARGININE TRANSLOCATION B) FUNCTION: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation (By similarity). {ECO:0000250}. 28232 Sec-independent protein translocase protein TATB, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 106) (Protein TWIN-ARGININE TRANSLOCATION B) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; TAT protein transport complex [GO:0033281]; thylakoid [GO:0009579]; proton motive force dependent protein transmembrane transporter activity [GO:0009977]; positive regulation of stomatal opening [GO:1902458]; protein import into chloroplast thylakoid membrane [GO:0045038]; protein secretion [GO:0009306]; regulation of reactive oxygen species biosynthetic process [GO:1903426]; regulation of response to water deprivation [GO:2000070]; response to cold [GO:0009409] locus:2156722; AT5G52440 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development especially thylakoid membrane formation. TATC and TATB mediate precursor recognition whereas TATA facilitates translocation Sec-independent protein translocase protein TATB, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 106) (Protein TWIN-ARGININE TRANSLOCATION B),Os06g0102600 protein (Fragment) Q2R237,A0A0P0WRR8 TATB_ORYSJ,A0A0P0WRR8_ORYSJ TATB HCF106 Os11g0580800 LOC_Os11g37130 OsJ_34377,Os06g0102600 OSNPB_060102600 FUNCTION: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation. {ECO:0000250|UniProtKB:O48950}. ENOG411E3FE Q501B3 Q501B3_ARATH At5g61865 47691 At5g61865 locus:505006708; AT5G61865 Inherit from KOG: mitochondrial import inner membrane translocase subunit NA NA NA NA NA NA NA ENOG411DTIF TULP3,TLP3 Q8VY21,C0Z2Z7 TLP3_ARATH,C0Z2Z7_ARATH Tubby-like F-box protein 3 (AtTLP3),AT2G47900 protein (Tubby like protein 3) DISRUPTION PHENOTYPE: Reduced colonization of the roots by the mutualistic fungus Piriformospora indica. {ECO:0000269|PubMed:22751378}. FUNCTION: Involved in abiotic stress signaling. Tethered to plasma membrane (PM) and probably bound to phosphatidylinositol 4,5-bisphosphate. Abiotic stresses (drought, salt, H(2)O(2)) trigger phospholipase C mediated PM dislogement and plastidial and nucleocytosolic relocation of TULP3. {ECO:0000269|PubMed:22751378}. 45312,45383 Tubby-like F-box protein 3 (AtTLP3),AT2G47900 protein (Tubby like protein 3) nucleoplasm [GO:0005654]; plasma membrane [GO:0005886]; plastid [GO:0009536]; phosphatidylinositol binding [GO:0035091],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plastid [GO:0009536]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to osmotic stress [GO:0071470]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620]; response to hydrogen peroxide [GO:0042542]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Ubiquitous at low levels. Not detected in mature siliques. {ECO:0000269|PubMed:15064372, ECO:0000269|PubMed:22751378}. locus:2043303; AT2G47900 tubby-like F-box protein NA NA NA NA NA NA NA ENOG411DZGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: family with sequence similarity 213 member NA NA NA NA NA NA NA ENOG411DZGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DCD Os06g0174375 protein (Fragment),Os06g0174350 protein (Fragment) C7J457,A0A0N7KLM1 C7J457_ORYSJ,A0A0N7KLM1_ORYSJ Os06g0174375 Os06g0174375 OSNPB_060174375,Os06g0174350 OSNPB_060174350 ENOG411DZGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os02g0658400 protein (Fragment) A0A0N7KFT6 A0A0N7KFT6_ORYSJ Os02g0658400 OSNPB_020658400 ENOG411DZGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Coiled-coil domain containing 93 NA NA NA NA NA NA NA ENOG411DZGA ROPGAP3 Q8GYY5 RGAP3_ARATH Rho GTPase-activating protein 3 (Rho-type GTPase-activating protein 3) FUNCTION: Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Involved in secondary wall pattern formation. In association with ROPGEF4, mediates local activation of ARAC10/ROP11 to initiate the distinct pattern of secondary cell walls in xylem cells. {ECO:0000269|PubMed:22984069}. 50782 Rho GTPase-activating protein 3 (Rho-type GTPase-activating protein 3) plasma membrane [GO:0005886]; secondary cell wall [GO:0009531]; GTPase activator activity [GO:0005096]; multicellular organism development [GO:0007275]; plant-type cell wall organization [GO:0009664]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed in differentiating xylem cells. {ECO:0000269|PubMed:22984069}. locus:2062770; AT2G46710 RhoGAP domain containing protein expressed OSJNBa0020J04.11 protein (Os04g0577200 protein) (cDNA clone:J033078K23, full insert sequence),Os02g0679500 protein (Fragment) Q7XUH1,Q0DYN7 Q7XUH1_ORYSJ,Q0DYN7_ORYSJ Os04g0577200 Os04g0577200 OsJ_15869 OSJNBa0020J04.11 OSNPB_040577200,Os02g0679500 Os02g0679500 OSNPB_020679500 ENOG411DZGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase HcrVf1 protein-like (Os01g0603500 protein) Q5ZBC5 Q5ZBC5_ORYSJ Os01g0603500 B1085F01.31 OSNPB_010603500 P0681B11.11 ENOG411DZGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent helicase C-terminal NA NA NA NA NA NA NA ENOG411DZGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0697200 protein (cDNA clone:001-028-E09, full insert sequence) (cDNA clone:J033116E03, full insert sequence) Q6YUH8 Q6YUH8_ORYSJ Os02g0697200 OsJ_08025 OSNPB_020697200 P0459B01.2 P0666E12.10 ENOG411DTIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0647600 protein Q0D438 Q0D438_ORYSJ Os07g0647600 Os07g0647600 OSNPB_070647600 ENOG411DZG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0042D13.1 protein (OSJNBb0052B05.14 protein) (Os04g0258900 protein) (cDNA clone:001-109-F06, full insert sequence) Q7X692 Q7X692_ORYSJ Os04g0258900 Os04g0258900 OSJNBa0042D13.1 OSJNBb0052B05.14 OSNPB_040258900 ENOG411DZG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os07g0158800 protein (cDNA clone:002-103-F02, full insert sequence) Q6Z134 Q6Z134_ORYSJ Os07g0158800 Os07g0158800 OSNPB_070158800 P0455F03.29 ENOG411DTI8 XTH32 Q9SJL9,F4IP22 XTH32_ARATH,F4IP22_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 32 (At-XTH32) (XTH-32) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase 32 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. MISCELLANEOUS: In contrast to group 1 and group 2 endotransglucosylase/hydrolase proteins, it may not contain the ligase activity, and may catalyze endohydrolysis xyloglucan polymers only. ARA:AT2G36870-MONOMER; 2.4.1.207 34482,20257 Probable xyloglucan endotransglucosylase/hydrolase protein 32 (At-XTH32) (XTH-32) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase 32 apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall macromolecule catabolic process [GO:0016998]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Predominantly expressed in stems. {ECO:0000269|PubMed:11673616}. locus:2058006; AT2G36870 Xyloglucan endotransglucosylase hydrolase protein Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Q8GVR3,Q6K9X1 Q8GVR3_ORYSJ,Q6K9X1_ORYSJ P0434A03.134 Os07g0480800 OSNPB_070480800,Os02g0823700 OJ1063_D06.3 OJ1136_C04.11 OSNPB_020823700 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411EFTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Proteasome-associated protein ECM29 homolog NA NA NA NA NA NA NA ENOG411DWJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) (Fragment) Q65X86,Q0DGK3,A0A0N7KDP9 Q65X86_ORYSJ,Q0DGK3_ORYSJ,A0A0N7KDP9_ORYSJ Os05g0526800 OJ1187_E11.2 OJ1593_C11.16 OsJ_19276 OSNPB_050526800,Os05g0526900 Os05g0526900 OsJ_19277 OSNPB_050526900,Os01g0736300 OSNPB_010736300 ENOG411DWJ0 TKPR1 Q500U8 TKPR1_ARATH Tetraketide alpha-pyrone reductase 1 (EC 1.1.1.-) (Protein DIHYDROFLAVONOL 4-REDUCTASE-LIKE 1) DISRUPTION PHENOTYPE: Male sterility due to distorted pollen grains lacking reticulate exine pattern. {ECO:0000269|PubMed:19054337, ECO:0000269|PubMed:21193572}. impaired pollen formation and seed production Reduced fertility-M. Legrand-2010 FUNCTION: Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Is essential for pollen wall development. Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. {ECO:0000269|PubMed:19054337, ECO:0000269|PubMed:21193572}. ARA:AT4G35420-MONOMER;MetaCyc:AT4G35420-MONOMER; 1.1.1.- 36463 Tetraketide alpha-pyrone reductase 1 (EC 1.1.1.-) (Protein DIHYDROFLAVONOL 4-REDUCTASE-LIKE 1) endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; coenzyme binding [GO:0050662]; oxidoreductase activity [GO:0016491]; pollen development [GO:0009555]; pollen exine formation [GO:0010584]; seed development [GO:0048316]; sporopollenin biosynthetic process [GO:0080110] TISSUE SPECIFICITY: Specifically expressed in anther tapetal cells during microspores development. {ECO:0000269|PubMed:19054337, ECO:0000269|PubMed:21193572, ECO:0000269|PubMed:23632852}. locus:2122093; AT4G35420 bifunctional dihydroflavonol 4-reductase flavanone Os08g0516100 protein,Os09g0493500 protein,Os08g0515900 protein Q84Z59,Q0J0M1,A0A0N7KQ50 Q84Z59_ORYSJ,Q0J0M1_ORYSJ,A0A0N7KQ50_ORYSJ P0686C03.129 Os08g0516100 OSNPB_080516100,Os09g0493500 OSNPB_090493500,Os08g0515900 OSNPB_080515900 ENOG411DWJ3 CSN7,FUS5 Q94JU3,F4HVW0 CSN7_ARATH,F4HVW0_ARATH COP9 signalosome complex subunit 7 (CSN complex subunit 7) (Protein FUSCA 5),Proteasome component (PCI) domain protein Dark-grown mutants exhibit short hypocotyls and open expanded cotyledons similar to light-grown mutant and wild-type seedlings and accumulate high levels of anthocyanin. In addition mutants develop chloroplasts in the dark express high levels of light-inducible genes although grown in darkness and die after the seedling stage in light and darkness.,In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,In the homozygous progeny dark purple seeds.,In the homozygous progeny the mutation leads to CSN1 CSN3 CSN4 CSN6 and CSN8 instability accompanied by a mild reduction of CSN5.,Mutation is lethal in the homozygous state. Red cotyledons due to anthocyanin accumulation; Abnormal growth in the dark-D. Chamovitz-1999 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. Regulates the TSO2 subcellular localization. May be involved in nucleic acid binding. {ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:18854373, ECO:0000269|PubMed:21614643}. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 29469,26796 COP9 signalosome complex subunit 7 (CSN complex subunit 7) (Protein FUSCA 5),Proteasome component (PCI) domain protein COP9 signalosome [GO:0008180]; cytosol [GO:0005829]; COP9 signalosome assembly [GO:0010387]; multicellular organism development [GO:0007275]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585],proteasome complex [GO:0000502] locus:2205593; AT1G02090 COP9 signalosome complex subunit Os07g0490800 protein (Fragment) Q0D6D1 Q0D6D1_ORYSJ Os07g0490800 Os07g0490800 OSNPB_070490800 ENOG411DWJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Glycosyltransferase family-like (Os09g0480400 protein) (cDNA clone:J023110G15, full insert sequence) Q69QS2 Q69QS2_ORYSJ Os09g0480400 Os09g0480400 OsJ_29771 OSNPB_090480400 P0463D04.11 P0463G11.26 ENOG411DWJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger Os05g0112200 protein (Putative dof-type zinc finger domain-containing protein) Q65XV0 Q65XV0_ORYSJ Os05g0112200 OSNPB_050112200 P0016H04.18 ENOG411DWJ4 PCMP-A5 Q9LRV2 PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540 79195 Pentatricopeptide repeat-containing protein At3g26540 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2088827; AT3G26540 Pentatricopeptide repeat-containing protein OSJNBa0006B20.8 protein (Os04g0436800 protein) (cDNA clone:J033025G14, full insert sequence) Q7XV61 Q7XV61_ORYSJ Os04g0436800 OSJNBa0006B20.8 OSNPB_040436800 ENOG411DWJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0284700 protein,Os12g0285100 protein (Fragment),Os12g0449900 protein,Os12g0549400 protein Q2QTS3,A0A0P0Y944,A0A0N7KTZ8,A0A0P0Y985,A0A0P0Y9P0,A0A0P0YBB4 Q2QTS3_ORYSJ,A0A0P0Y944_ORYSJ,A0A0N7KTZ8_ORYSJ,A0A0P0Y985_ORYSJ,A0A0P0Y9P0_ORYSJ,A0A0P0YBB4_ORYSJ Os12g0284700 LOC_Os12g18690 OsJ_35778 OSNPB_120284700,Os12g0285100 OSNPB_120285100,Os12g0449900 OSNPB_120449900,Os12g0549400 OSNPB_120549400 ENOG411DWJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase Cadmium/zinc-transporting ATPase HMA3 (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 3) (OsHMA3),Os01g0869100 protein (Potential cadmium/zinc-transporting ATPase 4-like) Q8H384,Q5N954 HMA3_ORYSJ,Q5N954_ORYSJ HMA3 CASTLE1n Os07g0232900 LOC_Os07g12900 OSJNBa0061L20.105,P0677H08.28 Os01g0869100 OSNPB_010869100 FUNCTION: Root-specific cadmium (Cd) transporter that mediates Cd efflux in root vacuoles. Involved in Cd detoxification by sequestrating Cd into root vacuoles and limiting translocation of Cd from the roots to the shoots, and accumulation in grains. {ECO:0000269|PubMed:20823253, ECO:0000269|PubMed:20840506, ECO:0000269|PubMed:25151617}. ENOG411DWJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Os03g0348800 protein (Triacylglycerol Lipase, putative, expressed) (cDNA clone:006-201-G01, full insert sequence) (cDNA clone:J013049I08, full insert sequence) Q10LI2 Q10LI2_ORYSJ Os03g0348800 LOC_Os03g22670 OSNPB_030348800 ENOG411DWJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os03g0239400 protein (Transcription factor HBP-1a, putative, expressed) (cDNA clone:J013071G08, full insert sequence) Q10PC3 Q10PC3_ORYSJ LOC_Os03g13614 Os03g0239400 OsJ_10083 OSNPB_030239400 ENOG411EFTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWJQ Q9C5F4,F4I5H7 Q9C5F4_ARATH,F4I5H7_ARATH Anthranilate phosphoribosyltransferase (Uncharacterized protein At1g70570),Anthranilate phosphoribosyltransferase 65224,69803 Anthranilate phosphoribosyltransferase (Uncharacterized protein At1g70570),Anthranilate phosphoribosyltransferase transferase activity, transferring glycosyl groups [GO:0016757]; metabolic process [GO:0008152],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; GMP synthase (glutamine-hydrolyzing) activity [GO:0003922]; GMP synthase activity [GO:0003921]; transferase activity, transferring glycosyl groups [GO:0016757]; GMP biosynthetic process [GO:0006177] locus:2026836; AT1G70570 anthranilate Os02g0131200 protein (Putative Anthranilate phosphoribosyltransferase) (cDNA clone:J023035J06, full insert sequence) Q6ZG91 Q6ZG91_ORYSJ Os02g0131200 OJ1007_D04.17 OSNPB_020131200 ENOG411DWJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein Armadillo repeat-containing protein-like (Os01g0948500 protein) (cDNA clone:001-131-D10, full insert sequence) Q8GSZ9 Q8GSZ9_ORYSJ Os01g0948500 OSNPB_010948500 P0466H10.39 ENOG411DWJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411DWJR GRXS17 Q9ZPH2,O65541 GRS17_ARATH,O65541_ARATH Monothiol glutaredoxin-S17 (AtGrxS17),Thioredoxin superfamily protein (Uncharacterized protein At4g32580) (Uncharacterized protein F4D11.220) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides (Probable). Participates probably to the maturation of iron-sulfur proteins and to the regulation of the redox state of the BOLA proteins. The GRXS17-BOLA2 heterodimer binds a labile, oxygen sensitive iron-sulfur cluster (PubMed:24714563). {ECO:0000269|PubMed:24714563, ECO:0000305}. 53115,17351 Monothiol glutaredoxin-S17 (AtGrxS17),Thioredoxin superfamily protein (Uncharacterized protein At4g32580) (Uncharacterized protein F4D11.220) cytosol [GO:0005829]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; auxin polar transport [GO:0009926]; cell redox homeostasis [GO:0045454]; cellular response to DNA damage stimulus [GO:0006974]; reactive oxygen species metabolic process [GO:0072593]; regulation of cell cycle [GO:0051726]; response to heat [GO:0009408],cell [GO:0005623]; cell redox homeostasis [GO:0045454] locus:2135363;,locus:2125627; AT4G04950,AT4G32580 Monothiol Monothiol glutaredoxin-S11,Os10g0501000 protein (Fragment),Os10g0501300 protein (Pentatricopeptide, putative, expressed) (Putative leaf protein),Os10g0501200 protein,Os10g0500700 protein Q0IWL9,Q0IWL8,Q8LNF7,A0A0P0XWF9,A0A0P0XVV6 GRS11_ORYSJ,Q0IWL8_ORYSJ,Q8LNF7_ORYSJ,A0A0P0XWF9_ORYSJ,A0A0P0XVV6_ORYSJ GRXS11 Os10g0500700 LOC_Os10g35720 OsJ_32056 OSJNBa0078O01.9,Os10g0501000 OSNPB_100501000,Os10g0501300 LOC_Os10g35760 Os10g0501300 OSJNBa0078O01.26 OSNPB_100501300,Os10g0501200 OSNPB_100501200,Os10g0500700 OSNPB_100500700 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411DWJU GEX2 F4K4R6,W0TY53,A0A1P8BC45,A0A1P8BC47,A0A1P8BC31,A0A1P8BC40,A0A1P8BC34,A0A1P8BC26 GEX2_ARATH,W0TY53_ARATH,A0A1P8BC45_ARATH,A0A1P8BC47_ARATH,A0A1P8BC31_ARATH,A0A1P8BC40_ARATH,A0A1P8BC34_ARATH,A0A1P8BC26_ARATH Protein GAMETE EXPRESSED 2,Gamete expressed 2 (Gamete expressed 2 protein),Gamete expressed 2 100588,119870,89458,118654,107430,106942,119382,88970 Protein GAMETE EXPRESSED 2,Gamete expressed 2 (Gamete expressed 2 protein),Gamete expressed 2 integral component of plasma membrane [GO:0005887]; pollen sperm cell differentiation [GO:0048235],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: In tricellular pollen, expressed in mature sperm cells but not in the vegetative cell. In bicellular pollen, detected in the progenitor generative cell. Detected in the egg cell within the female gametophyte. {ECO:0000269|PubMed:16055690, ECO:0000269|PubMed:19825564}. locus:2155949; AT5G49150 Filamin/ABP280 repeat Os09g0424701 protein,Os09g0424800 protein A0A0P0XM12,A0A0P0XMN3 A0A0P0XM12_ORYSJ,A0A0P0XMN3_ORYSJ Os09g0424701 OSNPB_090424701,Os09g0424800 OSNPB_090424800 ENOG411DWJT HEXO2 Q9SYK0 HEXO2_ARATH Beta-hexosaminidase 2 (EC 3.2.1.52) (Beta-GlcNAcase 2) (Beta-N-acetylhexosaminidase 2) (Beta-hexosaminidase 3) (AtHEX3) (N-acetyl-beta-glucosaminidase 2) FUNCTION: Has a broad substrate specificity. Can use synthetic substrates such as p-nitrophenyl-beta-N-acetylglucosaminide, p-nitrophenyl-2-acetamido-2-deoxy-beta-D-glucopyranoside (pNP-GlcNAc), p-nitrophenyl-2-acetamido-2-deoxy-beta-D-galactopyranoside (pNP-GalNAc), 4-methylumbelliferyl-2-acetamido-2-deoxy-beta-D-glucopyranoside (MU-GlcNAc), and 4-methylumbelliferyl-6-sulfo-2-acetamido-2-deoxy-beta-D-glucopyranoside (MU-GlcNAc-6SO(4)) as substrates. Removes terminal GlcNAc residues from alpha1,3- and alpha1,6-mannosyl branches of biantennary N-glycans without any strict branch preference. {ECO:0000269|PubMed:17636254, ECO:0000269|PubMed:17644627, ECO:0000269|PubMed:21252225}. ARA:AT1G05590-MONOMER; 3.2.1.52; 3.2.1.52 64991 Beta-hexosaminidase 2 (EC 3.2.1.52) (Beta-GlcNAcase 2) (Beta-N-acetylhexosaminidase 2) (Beta-hexosaminidase 3) (AtHEX3) (N-acetyl-beta-glucosaminidase 2) plasma membrane [GO:0005886]; beta-N-acetylhexosaminidase activity [GO:0004563]; hexosaminidase activity [GO:0015929]; N-acetyl-beta-D-galactosaminidase activity [GO:0102148]; UDP-glucosyltransferase activity [GO:0035251]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17644627}. locus:2031988; AT1G05590 beta-hexosaminidase Beta-hexosaminidase (EC 3.2.1.52),Os05g0390200 protein Q10PW1,Q6I5X5,A0A0P0X7V8 Q10PW1_ORYSJ,Q6I5X5_ORYSJ,A0A0P0X7V8_ORYSJ Os03g0219400 LOC_Os03g11980 Os03g0219400 OsJ_09944 OSNPB_030219400,Os05g0390200 OJ1562_H01.10 OsJ_18416 OSNPB_050390200,Os07g0575500 OSNPB_070575500 ENOG411DWJW XLG3 Q9C516 XLG3_ARATH Extra-large guanine nucleotide-binding protein 3 (Extra-large GTP-binding protein 3) (Extra-large G-protein 3) DISRUPTION PHENOTYPE: No visible phenotype. Severely compromised root waving and abnormal root skewing response. Hypersensitivity to ethylene (ACC). {ECO:0000269|PubMed:17999646, ECO:0000269|PubMed:18397373}. FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems (By similarity). Binds GTP with specificity. Plays a role in the root morphogenesis by regulation of the cell proliferation. Acts with GB1 in the positive regulation of root waving and root skewing. {ECO:0000250, ECO:0000269|PubMed:17999646, ECO:0000269|PubMed:18397373}. MISCELLANEOUS: Dark-grown xlg1-1 xlg2-1 xlg3-1 triple mutant plants showed markedly increased primary root length compared with wild-type plants. Dark-grown roots of the xlg triple mutants also showed altered sensitivity to sugars, abscisic acid (ABA) hyposensitivity and ethylene hypersensitivity, whereas seed germination in xlg triple mutants was hypersensitive to osmotic stress and ABA (PubMed:17999646). {ECO:0000305|PubMed:17999646}. R-ATH-112043;R-ATH-202040;R-ATH-2514859;R-ATH-399997;R-ATH-416476;R-ATH-416482;R-ATH-418555;R-ATH-434316; 96171 Extra-large guanine nucleotide-binding protein 3 (Extra-large GTP-binding protein 3) (Extra-large G-protein 3) heterotrimeric G-protein complex [GO:0005834]; nucleus [GO:0005634]; G-protein beta/gamma-subunit complex binding [GO:0031683]; G-protein coupled receptor binding [GO:0001664]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; signal transducer activity [GO:0004871]; adenylate cyclase-modulating G-protein coupled receptor signaling pathway [GO:0007188]; regulation of root development [GO:2000280]; response to bacterium [GO:0009617]; response to ethylene [GO:0009723] TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in vascular tissues, root and shoot meristems and lateral root primordia. {ECO:0000269|PubMed:17999646}. locus:2034446; AT1G31930 GTP-binding protein Os06g0111400 protein (Putative extra-large G-protein) (cDNA clone:J023031J07, full insert sequence),G-protein alpha subunit, putative, expressed (Os11g0206700 protein) (cDNA clone:J023039G05, full insert sequence),Os10g0117800 protein (Fragment),Os06g0111400 protein (Fragment),Os11g0206700 protein (Fragment) Q9LI02,Q2R941,Q0IZ94,A0A0P0XS71,A0A0P0WS66,A0A0P0Y0H5 Q9LI02_ORYSJ,Q2R941_ORYSJ,Q0IZ94_ORYSJ,A0A0P0XS71_ORYSJ,A0A0P0WS66_ORYSJ,A0A0P0Y0H5_ORYSJ Os06g0111400 OsJ_19863 OSNPB_060111400 P0029D06.12,Os11g0206700 LOC_Os11g10050 Os11g0206700 OsJ_33304 OSNPB_110206700,Os10g0117800 OSNPB_100117800,Os06g0111400 OSNPB_060111400,Os11g0206700 OSNPB_110206700 ENOG411DWJV F9F8.20 Q5XV52,Q8W4N1 Q5XV52_ARATH,Q8W4N1_ARATH PLAC8 family protein,PLAC8 family protein (Uncharacterized protein At3g10980) (Uncharacterized protein At3g10980; F9F8.20) 59682,63234 PLAC8 family protein,PLAC8 family protein (Uncharacterized protein At3g10980) (Uncharacterized protein At3g10980; F9F8.20) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2153544;,locus:2085502; AT5G05350,AT3G10980 Protein of unknown function (DUF2985) Os05g0474900 protein Q65WW0 Q65WW0_ORYSJ Os05g0474900 Os05g0474900 OsJ_18905 OSNPB_050474900 P0486C01.15 ENOG411DWJY DELTA-OAT Q9FNK4 OAT_ARATH Ornithine aminotransferase, mitochondrial (EC 2.6.1.13) (Ornithine delta-aminotransferase) (Ornithine--oxo-acid aminotransferase) DISRUPTION PHENOTYPE: Unable to use arginine or ornithine as nitrogen source. Displays sensitivity against type II non-host pathogen infection. {ECO:0000269|PubMed:18419821, ECO:0000269|PubMed:22321246}. This mutant has about 1/10 of the ornithine aminotransferase activity detected in wild type plants but it has no other obvious phenotypic defects when grown under greenhouse conditions. In response to salt-stress the mutant appears to produce wild-type levels of proline. However unlike wild type seedlings mutant seedlings cannot survive when arginine or ornithine is provided as the sole nitrogen source implicating this enzyme in arginine catabolism. Seedling lethal with ornithine or arginine as sole nitrogen source-W. Koch-2008 FUNCTION: Mediates degradation of arginine for nitrogen recycling. Plays a role in non-host disease resistance by regulating pyrroline-5-carboxylate metabolism-induced hypersensitive response. {ECO:0000269|PubMed:18419821, ECO:0000269|PubMed:22321246}. PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-ornithine: step 1/1. ARA:AT5G46180-MONOMER;MetaCyc:AT5G46180-MONOMER; R-ATH-70614; 2.6.1.13; 2.6.1.13 52178 Ornithine aminotransferase, mitochondrial (EC 2.6.1.13) (Ornithine delta-aminotransferase) (Ornithine--oxo-acid aminotransferase) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; identical protein binding [GO:0042802]; ornithine-oxo-acid transaminase activity [GO:0004587]; pyridoxal phosphate binding [GO:0030170]; zinc ion binding [GO:0008270]; arginine catabolic process to glutamate [GO:0019544]; defense response to bacterium, incompatible interaction [GO:0009816]; hyperosmotic salinity response [GO:0042538]; mitochondrion localization [GO:0051646]; ornithine catabolic process [GO:0006593]; plant-type hypersensitive response [GO:0009626]; proline biosynthetic process [GO:0006561]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to flooding [GO:0009413]; response to heat [GO:0009408]; response to jasmonic acid [GO:0009753]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:2161398; AT5G46180 ornithine-oxo-acid transaminase activity Ornithine aminotransferase, mitochondrial (EC 2.6.1.13) (Ornithine delta-aminotransferase) (Ornithine--oxo-acid aminotransferase),Os03g0643300 protein (Fragment) Q10G56,A0A0P0W0L3 OAT_ORYSJ,A0A0P0W0L3_ORYSJ OAT Os03g0643300 LOC_Os03g44150 OSJNBa0038E17.15,Os03g0643300 OSNPB_030643300 FUNCTION: Confers drought and oxidative stress tolerance mainly through enhancing ROS-scavenging capacity and Pro pre-accumulation. {ECO:0000269|PubMed:23116672}. ENOG411DWJX NFXL1 Q9SY59,A0A1P8AVZ2,A0A1P8AVY4 NFXL1_ARATH,A0A1P8AVZ2_ARATH,A0A1P8AVY4_ARATH NF-X1-type zinc finger protein NFXL1 (AtNFXL1) (EC 6.3.2.-),NF-X-like 1 DISRUPTION PHENOTYPE: Impaired growth and survival under salt stress. Reduced H(2)O(2) production. Hypersensitivity to T-2 toxin and DAS (but not to DON), accompanied by enhanced SA accumulation and several plant defense gene induction. Less susceptible to Pst DC3000. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. Reduced growth (decreased biomass) when grown under conditions with salt or osmotic stress. Reduced levels of H2O2. Susceptible to fungal mycotoxin; Altered defense response-T. Nishiuchi-2007 FUNCTION: Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. PATHWAY: Protein modification; protein ubiquitination. 6.3.2.- 130716,133103,122265 NF-X1-type zinc finger protein NFXL1 (AtNFXL1) (EC 6.3.2.-),NF-X-like 1 nucleus [GO:0005634]; ligase activity [GO:0016874]; mRNA binding [GO:0003729]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001078]; zinc ion binding [GO:0008270]; defense response to bacterium [GO:0042742]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; protein ubiquitination [GO:0016567]; regulation of hydrogen peroxide metabolic process [GO:0010310]; response to light intensity [GO:0009642]; response to microbial phytotoxin [GO:0010188]; response to salt stress [GO:0009651]; salicylic acid biosynthetic process [GO:0009697]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. locus:2012753; AT1G10170 NF-X1-type zinc finger protein Os06g0252300 protein (Fragment) A0A0P0WUQ4,A0A0P0WV74 A0A0P0WUQ4_ORYSJ,A0A0P0WV74_ORYSJ Os06g0252300 OSNPB_060252300 ENOG411DWJA F4IW50 F4IW50_ARATH Polyphosphatidylinositol phosphatase 43482 Polyphosphatidylinositol phosphatase locus:2050911; AT2G45320 NA Os06g0571300 protein A0A0P0WY28 A0A0P0WY28_ORYSJ Os06g0571300 OSNPB_060571300 ENOG411DWJC PCMP-E40 Q84MA3,A0A1P8B4N6 PP345_ARATH,A0A1P8B4N6_ARATH Pentatricopeptide repeat-containing protein At4g32430, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein 85184,70584 Pentatricopeptide repeat-containing protein At4g32430, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; positive regulation of mitochondrial mRNA catabolic process [GO:1905639]; RNA modification [GO:0009451] locus:2127801; AT4G32430 Pentatricopeptide repeat-containing protein At4g32430 Os07g0670000 protein (Selenium-binding protein-like protein),Os07g0670000 protein (Fragment) Q8GSH3,A0A0N7KP14 Q8GSH3_ORYSJ,A0A0N7KP14_ORYSJ P0470D12.102 P0625E02.133 Os07g0670000 OSNPB_070670000,Os07g0670000 OSNPB_070670000 ENOG411DWJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA START domain Homeobox-leucine zipper protein TF1 (HD-ZIP protein TF1) (Homeodomain transcription factor TF1) (Protein TRANSCRIPTION FACTOR 1) (OsTF1),Os01g0788800 protein (Fragment),Os01g0788800 protein Q5ZAY0,A0A0P0V990,A0A0P0V954 TF1_ORYSJ,A0A0P0V990_ORYSJ,A0A0P0V954_ORYSJ TF1 Os01g0788800 LOC_Os01g57890 P0415A04.46-1 P0415A04.46-2 P0415A04.46-3 P0415A04.46-4 P0557A01.4-1 P0557A01.4-2 P0557A01.4-3 P0557A01.4-4,Os01g0788800 OSNPB_010788800 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DWJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0468500 protein (Putative GDSL-motif lipase/hydrolase),Os01g0832100 protein (Putative family II extracellular lipase 3 (EXL3)) Q6I5R8,Q5QLD0 Q6I5R8_ORYSJ,Q5QLD0_ORYSJ Os05g0468500 OJ1058_C01.7 OSNPB_050468500,Os01g0832100 Os01g0832100 OSNPB_010832100 P0446G04.42 P0460C04.1 ENOG411DWJD FOLK Q67ZM7 FOLK_ARATH Farnesol kinase, chloroplastic (EC 2.7.1.216) DISRUPTION PHENOTYPE: Increased sensitivity to abscisic acid. {ECO:0000269|PubMed:21395888}. This mutant lacks farnesol kinase activity exhibits an enhanced response to ABA in seed germination assays and develops supernumerary carpels under water-stress (drought-stress) conditions. FUNCTION: Kinase involved in negative regulation of abscisic acid (ABA) signaling. Substrate preferrence is farnesol > geraniol > geranylgeraniol, but has no activity with farnesyl phosphate. Can use CTP > ATP > GTP = UTP as phosphoryl donor. {ECO:0000269|PubMed:21395888}. MetaCyc:AT5G58560-MONOMER; 2.7.1.216 33218 Farnesol kinase, chloroplastic (EC 2.7.1.216) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; CTP:2-trans,-6-trans-farnesol kinase activity [GO:0052669]; farnesol kinase activity [GO:0052668]; geraniol kinase activity [GO:0052670]; geranylgeraniol kinase activity [GO:0052671]; kinase activity [GO:0016301]; carpel development [GO:0048440]; farnesol metabolic process [GO:0016487]; isoprenoid metabolic process [GO:0006720]; response to abscisic acid [GO:0009737] locus:2178768; AT5G58560 Phytol kinase Probable phytol kinase 2, chloroplastic (EC 2.7.1.182),Os01g0832000 protein Q5N9J9,Q0JI11 PHYK2_ORYSJ,Q0JI11_ORYSJ Os01g0832000 LOC_Os01g61560 P0446G04.41,Os01g0832000 Os01g0832000 OsJ_03964 OSNPB_010832000 FUNCTION: Involved in the activation and reutilization of phytol from chlorophyll degradation in plant metabolism, including tocopherol biosynthesis. Catalyzes the conversion of phytol to phytol monophosphate (PMP) (By similarity). {ECO:0000250}. ENOG411DWJG Q9STM6 GDL57_ARATH GDSL esterase/lipase At3g48460 (EC 3.1.1.-) (Extracellular lipase At3g48460) ARA:AT3G48460-MONOMER; 3.1.1.- 42235 GDSL esterase/lipase At3g48460 (EC 3.1.1.-) (Extracellular lipase At3g48460) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2101180; AT3G48460 GDSL esterase lipase GDSL-motif lipase/hydrolase family protein, putative, expressed (Os03g0844600 protein) (Putative GDSL-like lipase/acylhydrolase) (cDNA clone:001-023-E06, full insert sequence),Os03g0844600 protein (Fragment) Q75LC6,A0A0P0W632 Q75LC6_ORYSJ,A0A0P0W632_ORYSJ OSJNBa0032G11.17 LOC_Os03g62740 Os03g0844600 OSNPB_030844600,Os03g0844600 OSNPB_030844600 ENOG411DWJF 2MMP,3MMP O04529,Q5XF51 2MMP_ARATH,3MMP_ARATH Metalloendoproteinase 2-MMP (At2-MMP) (EC 3.4.24.-),Metalloendoproteinase 3-MMP (At3-MMP) (EC 3.4.24.-) DISRUPTION PHENOTYPE: Growth inhibition, due to inhibited onset of shoots, reduced growth of roots, leaves and shoots, late flowering, fast degradation of chlorophyll in leaves and early senescence. {ECO:0000269|PubMed:11726650}. Late flowering; Early senescence-K. Dietz-2002 FUNCTION: Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). Required for plant growth, morphogenesis, and development with particular relevance for flowering and senescence (PubMed:11726650). Active on McaPLGLDpaAR-NH(2) (QF24) and myelin basic protein (MBP) and, to some extent, on beta-casein (PubMed:24156403). {ECO:0000250|UniProtKB:O23507, ECO:0000269|PubMed:11726650, ECO:0000269|PubMed:24156403}.,FUNCTION: Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). Active on McaPLGLDpaAR-NH(2) (QF24) and beta-casein and, to some extent, on myelin basic protein (MBP) (PubMed:24156403). {ECO:0000250|UniProtKB:O23507, ECO:0000269|PubMed:24156403}. R-ATH-1592389;R-ATH-6798695; 3.4.24.- 42006,43017 Metalloendoproteinase 2-MMP (At2-MMP) (EC 3.4.24.-),Metalloendoproteinase 3-MMP (At3-MMP) (EC 3.4.24.-) anchored component of membrane [GO:0031225]; extracellular matrix [GO:0031012]; plasma membrane [GO:0005886]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270]; developmental vegetative growth [GO:0080186]; multicellular organism development [GO:0007275]; negative regulation of leaf senescence [GO:1900056]; regulation of photoperiodism, flowering [GO:2000028]; response to cadmium ion [GO:0046686]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651],anchored component of membrane [GO:0031225]; extracellular matrix [GO:0031012]; plasma membrane [GO:0005886]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270] DEVELOPMENTAL STAGE: Accumulates during aging. Expressed in leaves and roots of young seedlings and in leaves, roots, and inflorescences of mature flowering plants. In leaves, present in the phloem, in developing xylem elements, epidermal cells, and neighboring mesophyll cell layers. In flowers, localized in pistils, ovules, and receptacles. {ECO:0000269|PubMed:11726650}. TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in flowers, leaves and stems. {ECO:0000269|PubMed:10574937, ECO:0000269|PubMed:11726650}.,TISSUE SPECIFICITY: Mostly expressed in leaves and roots, and, to a lower extent, in flowers and stems. {ECO:0000269|PubMed:10574937}. locus:2020548;,locus:2032467; AT1G70170,AT1G24140 Metalloendoproteinase Os02g0740700 protein (Putative zinc metalloproteinase),Os06g0239100 protein (Putative metalloproteinase) Q6Z7S6,Q67VB1 Q6Z7S6_ORYSJ,Q67VB1_ORYSJ Os02g0740700 Os02g0740700 OSNPB_020740700 P0516G10.18,Os06g0239100 Os06g0239100 OsJ_20758 OSJNBa0052G07.17 OSJNBa0068B06.26 OSNPB_060239100 ENOG411DWJI TEL1 F4JBE2 F4JBE2_ARATH Terminal EAR1-like 1 69480 Terminal EAR1-like 1 RNA binding [GO:0003723] locus:2090350; AT3G26120 Terminal Protein terminal ear1 homolog (MEI2-like protein 1) (OML1) (Protein LEAFY HEAD2) (Protein PLASTOCHRON2) Q0JGS5 EAR1_ORYSJ PLA2 LHD2 ML1 Os01g0907900 LOC_Os01g68000 B1417F08.27 OsJ_004377 P0497A05.12 DISRUPTION PHENOTYPE: Plants produce threefold the number of leaves, and leaf size and plant height are strongly reduced compared to wild-type. Shoot apical meristem (SAM) shows a higher rate of cell division and internode elongation is significantly reduced. Some inflorescence branches are converted into vegetative shoots. {ECO:0000269|PubMed:16461585}. FUNCTION: Probable RNA-binding protein. Involved in the regular timing (plastochron) of lateral organs formation. May regulate the rate of leaf initiation and the duration of vegetative phase. Seems to be redundant to the function of PLASTOCHRON1, but to act in an independent pathway. {ECO:0000269|PubMed:16461585}. MISCELLANEOUS: Plastochron is defined as the time interval between leaf initiation events. ENOG411DWJH MUR4 O64749,Q9SA77,A0A1P8AS43,A8MR41 ARAE2_ARATH,ARAE1_ARATH,A0A1P8AS43_ARATH,A8MR41_ARATH Putative UDP-arabinose 4-epimerase 2 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 2),UDP-arabinose 4-epimerase 1 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 1),NAD(P)-binding Rossmann-fold superfamily protein Abnormal starch, anthocyanin, and chlorophyll levels; Sensitive to sugar-M. Bevan-2007 FUNCTION: Acts as a UDP-D-xylose 4-epimerase but lacks both UDP-D-glucose and UDP-D-glucuronic acid 4-epimerase activities in vitro. {ECO:0000269|PubMed:12566589}. PATHWAY: Nucleotide-sugar biosynthesis; UDP-L-arabinose biosynthesis; UDP-L-arabinose from UDP-alpha-D-xylose: step 1/1.; PATHWAY: Cell wall biogenesis; cell wall polysaccharide biosynthesis. ARA:AT2G34850-MONOMER;,MetaCyc:AT1G30620-MONOMER; 5.1.3.5; 5.1.3.5 45955,46311,32295,46212 Putative UDP-arabinose 4-epimerase 2 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 2),UDP-arabinose 4-epimerase 1 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 1),NAD(P)-binding Rossmann-fold superfamily protein Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; UDP-arabinose 4-epimerase activity [GO:0050373]; UDP-glucose 4-epimerase activity [GO:0003978]; capsule polysaccharide biosynthetic process [GO:0045227]; embryo development ending in seed dormancy [GO:0009793]; galactose metabolic process [GO:0006012]; pollen tube development [GO:0048868]; UDP-L-arabinose biosynthetic process [GO:0033358],Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; UDP-arabinose 4-epimerase activity [GO:0050373]; UDP-glucose 4-epimerase activity [GO:0003978]; arabinose biosynthetic process [GO:0019567]; capsule polysaccharide biosynthetic process [GO:0045227]; galactose metabolic process [GO:0006012]; plant-type cell wall biogenesis [GO:0009832]; UDP-L-arabinose biosynthetic process [GO:0033358],UDP-glucose 4-epimerase activity [GO:0003978]; galactose metabolic process [GO:0006012] TISSUE SPECIFICITY: High expression in roots. Also found in leaves, stems, flowers, and siliques. {ECO:0000269|PubMed:12566589}. locus:2044802;,locus:2204639; AT2G34850,AT1G30620 UDP-arabinose 4-epimerase Probable UDP-arabinose 4-epimerase 2 (EC 5.1.3.5) (OsUEL-2) (UDP-D-xylose 4-epimerase 2) (UDP-galactose 4-epimerase-like protein 2),Probable UDP-arabinose 4-epimerase 3 (EC 5.1.3.5) (OsUEL-3) (UDP-D-xylose 4-epimerase 3) (UDP-galactose 4-epimerase-like protein 3),Probable UDP-arabinose 4-epimerase 1 (EC 5.1.3.5) (OsUEL-1) (UDP-D-xylose 4-epimerase 1) (UDP-galactose 4-epimerase-like protein 1),Os07g0139400 protein (Fragment) Q8H0B6,Q8H0B2,Q8H930,A0A0P0X2E8 ARAE2_ORYSJ,ARAE3_ORYSJ,ARAE1_ORYSJ,A0A0P0X2E8_ORYSJ UEL-2 Os04g0618200 LOC_Os04g52730 OsJ_16180 OSJNBa0058K23.4 OSJNBa0093O08.14,UEL-3 Os08g0129700 LOC_Os08g03570 P0582D05.120,UEL-1 Os07g0139400 LOC_Os07g04690 OJ1417_E01.121 OsJ_23039 P0495H05.61,Os07g0139400 OSNPB_070139400 ENOG411DWJK EXL7 O82176 EXOL7_ARATH Protein EXORDIUM-like 7 FUNCTION: May play a role in a brassinosteroid-dependent regulation of growth and development. {ECO:0000250}. 36026 Protein EXORDIUM-like 7 apoplast [GO:0048046]; extracellular space [GO:0005615] locus:2063399; AT2G35150 Phosphate-induced protein 1 conserved region Os07g0496700 protein (Putative phi-1(Phosphate-induced protein 1)) (cDNA clone:002-104-H11, full insert sequence) Q8LHZ7 Q8LHZ7_ORYSJ P0005E02.105 OJ1457_D07.124 Os07g0496700 OSNPB_070496700 ENOG411DWJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0909300 protein (Fragment),Os05g0549850 protein (Fragment) A0A0P0VC36,A0A0P0WQH9 A0A0P0VC36_ORYSJ,A0A0P0WQH9_ORYSJ Os01g0909300 OSNPB_010909300,Os05g0549850 OSNPB_050549850 ENOG411DWJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor Os01g0518000 protein (cDNA, clone: J090033F14, full insert sequence),Os01g0517800 protein B7F9M2,A0A0P0V3A4 B7F9M2_ORYSJ,A0A0P0V3A4_ORYSJ Os01g0518000 Os01g0518000 OsJ_02005 OSNPB_010518000,Os01g0517800 OSNPB_010517800 ENOG411DWJN Q5M758,Q0WPJ3,A0A1P8AUT1,F4HVP6 Q5M758_ARATH,Q0WPJ3_ARATH,A0A1P8AUT1_ARATH,F4HVP6_ARATH At1g74530 (Transmembrane protein),Transmembrane protein (Uncharacterized protein At1g74530),Transmembrane protein 32124,34862,27805,30047 At1g74530 (Transmembrane protein),Transmembrane protein (Uncharacterized protein At1g74530),Transmembrane protein integral component of membrane [GO:0016021] locus:2019230; AT1G74530 NA Os08g0171000 protein (cDNA clone:J023084C16, full insert sequence) Q6YYL0 Q6YYL0_ORYSJ Os08g0171000 Os08g0171000 OJ1590_E05.17 OSNPB_080171000 P0458D06.46 ENOG411DS96 AP4M,adaptor protein-4 mu-adaptin Q9SB50,F4JQZ0,F4JQY9 AP4M_ARATH,F4JQZ0_ARATH,F4JQY9_ARATH AP-4 complex subunit mu (Adaptor protein complex AP-4 subunit mu) (Adaptor protein-4 mu-adaptin) (Adaptor-related protein complex 4 subunit mu) (At-muC-Ad) (Mu4-adaptin),Clathrin adaptor complexes medium subunit family protein FUNCTION: Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. {ECO:0000250}. R-ATH-432720; 50946,42880,43375 AP-4 complex subunit mu (Adaptor protein complex AP-4 subunit mu) (Adaptor protein-4 mu-adaptin) (Adaptor-related protein complex 4 subunit mu) (At-muC-Ad) (Mu4-adaptin),Clathrin adaptor complexes medium subunit family protein AP-4 adaptor complex [GO:0030124]; clathrin adaptor complex [GO:0030131]; clathrin-coated pit [GO:0005905]; cytosol [GO:0005829]; trans-Golgi network [GO:0005802]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2121944; AT4G24550 AP-4 complex subunit Os07g0620300 protein (Putative clathrin-adaptor medium chain apm 4) (cDNA clone:001-030-C04, full insert sequence) (cDNA clone:001-202-C09, full insert sequence) (cDNA clone:J013101H15, full insert sequence) Q7XI39 Q7XI39_ORYSJ P0594D10.112 Os07g0620300 OsJ_25156 OSNPB_070620300 ENOG411DXUC FIP37 Q9ZSZ8 FIP37_ARATH FKBP12-interacting protein of 37 kDa (FIP-37) (Immunophilin-interacting protein AtFIP37) DISRUPTION PHENOTYPE: Embryogenesis arrest at the midglobular stage. {ECO:0000269|PubMed:15047892}. Embryo defective; Globular-M. Herzog-2002 FUNCTION: Probable regulatory subunit of the N6-methyltransferase complex, a multiprotein complex that mediates N6-methyladenosine (m6A) methylation of some adenosine residues of some mRNAs and plays a role in the efficiency of mRNA splicing and processing and mRNA stability (By similarity). Essential protein required during endosperm development and embryogenesis. Involved in endoreduplication, especially in trichomes. May play a role in splicing events. {ECO:0000250, ECO:0000269|PubMed:15047892}. R-ATH-72203; 37215 FKBP12-interacting protein of 37 kDa (FIP-37) (Immunophilin-interacting protein AtFIP37) nuclear speck [GO:0016607]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; meristem maintenance [GO:0010073]; mRNA methylation [GO:0080009]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; RNA methylation [GO:0001510] TISSUE SPECIFICITY: Ubiquitously expressed with higer levels in primary and lateral roots, leaves, trichomes, and in pollen grains (at protein level). {ECO:0000269|PubMed:15047892}. locus:2080275; AT3G54170 FKBP12-interacting protein of 37 Os06g0474200 protein (cDNA, clone: J090063M02, full insert sequence) B7F9Q5 B7F9Q5_ORYSJ Os06g0474200 OsJ_21344 OSNPB_060474200 ENOG411DXUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aspartic proteinase nepenthesin Os07g0532800 protein (Putative aspartic proteinase nepenthesin I),Os07g0533000 protein (Putative aspartic proteinase nepenthesin I),Os07g0533300 protein Q69IP7,Q69IP6,A0A0P0X779 Q69IP7_ORYSJ,Q69IP6_ORYSJ,A0A0P0X779_ORYSJ Os07g0532800 Os07g0532800 OSJNBa0039D04.11 OSNPB_070532800,OSJNBa0039D04.13 Os07g0533000 OSNPB_070533000,Os07g0533300 OSNPB_070533300 ENOG411DXUK AP22.72 A0A1P8B8T9,Q0WPT6,Q1PF11,A0A1P8B8S1 A0A1P8B8T9_ARATH,Q0WPT6_ARATH,Q1PF11_ARATH,A0A1P8B8S1_ARATH Zinc-finger domain of monoamine-oxidase A repressor R1,Uncharacterized protein At4g37110 (Zinc-finger domain of monoamine-oxidase A repressor R1) 36325,46930,62246,45408 Zinc-finger domain of monoamine-oxidase A repressor R1,Uncharacterized protein At4g37110 (Zinc-finger domain of monoamine-oxidase A repressor R1) nucleus [GO:0005634] locus:2114955;,locus:2046733; AT4G37110,AT2G23530 Zinc-finger domain of monoamine-oxidase A repressor R1 AT hook motif family protein, expressed (Os11g0568300 protein) (cDNA clone:J033124M10, full insert sequence) Q2R2F0 Q2R2F0_ORYSJ Os11g0568300 LOC_Os11g36030 Os11g0568300 OsJ_34301 OSNPB_110568300 ENOG411DXUT MSRA5 Q9SL43 MSRA5_ARATH Peptide methionine sulfoxide reductase A5 (AtMSRA5) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer (By similarity). {ECO:0000250}. 1.8.4.11; 1.8.4.11 28928 Peptide methionine sulfoxide reductase A5 (AtMSRA5) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) peptide-methionine (S)-S-oxide reductase activity [GO:0008113] locus:2060907; AT2G18030 peptide methionine sulfoxide reductase Peptide methionine sulfoxide reductase A5 (OsMSRA5) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase) Q5VPG8 MSRA5_ORYSJ MSRA5 Os06g0138100 LOC_Os06g04650 OSJNBa0041F13.12 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer (By similarity). {ECO:0000250}. ENOG411E2X6 IQD10 Q9LKA0 Q9LKA0_ARATH IQ-domain 10 29591 IQ-domain 10 locus:2086385; AT3G15050 IQ-domain NA NA NA NA NA NA NA ENOG411DR5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os05g0183900 protein,Os05g0184901 protein,Os05g0184500 protein Q65WX7,Q60F07,A0A0P0WJ09 Q65WX7_ORYSJ,Q60F07_ORYSJ,A0A0P0WJ09_ORYSJ Os05g0183900 OSNPB_050183900 P0683B12.13,Oj1111_A10.6 Os05g0184901 OSNPB_050184901,Os05g0184500 OSNPB_050184500 ENOG411E2X1 RPL27 Q9FLN4 RK27_ARATH 50S ribosomal protein L27, chloroplastic (CL27) DISRUPTION PHENOTYPE: Embryonic lethality. Embryo development arrested at the globular stage. {ECO:0000269|PubMed:22900828}. 21737 50S ribosomal protein L27, chloroplastic (CL27) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ribosome [GO:0005840]; thylakoid [GO:0009579]; structural constituent of ribosome [GO:0003735]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:2162971; AT5G40950 ribosomal protein L27 50S ribosomal protein L27, chloroplastic (CL27),Os01g0924000 protein O65037,A0A0N7KEB7 RK27_ORYSJ,A0A0N7KEB7_ORYSJ RPL27 Os01g0924000 LOC_Os01g69950 B1033B05.2-1 OsJ_04596 P0592G05.26-1,Os01g0924000 OSNPB_010924000 ENOG411E2X2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hpt domain Pseudo histidine-containing phosphotransfer protein 2 (OsHpt4) Q0DK78 PHP2_ORYSJ PHP2 Os05g0186100 LOC_Os05g09410 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low fertility and small grain phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction. {ECO:0000250|UniProtKB:Q8L9T7}. ENOG411E2XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2XQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E2XP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0573900 protein) Q2QN96 Q2QN96_ORYSJ Os12g0573900 LOC_Os12g38560 Os12g0573900 OSNPB_120573900 ENOG411EJQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger Os06g0731500 protein (Fragment),Os06g0731600 protein C7J3U6,A0A0P0X1F1 C7J3U6_ORYSJ,A0A0P0X1F1_ORYSJ Os06g0731500 Os06g0731500 OSNPB_060731500,Os06g0731600 OSNPB_060731600 ENOG411EJQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Mediator complex subunit 23 NA NA NA NA NA NA NA ENOG411E2XS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0659300 protein (cDNA clone:J023034O04, full insert sequence) Q0D3Y5 Q0D3Y5_ORYSJ Os07g0659300 Os07g0659300 OsJ_25438 OSNPB_070659300 ENOG411EJQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dedicator of cytokinesis NA NA NA NA NA NA NA ENOG411EJQ5 Q94C25 Y5005_ARATH Probable receptor-like protein kinase At5g20050 (EC 2.7.11.1) 2.7.11.1 51215 Probable receptor-like protein kinase At5g20050 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468] locus:2147635; AT5G20050 receptor-like protein kinase Os06g0142650 protein (S-receptor kinase-like) Q5VSC0 Q5VSC0_ORYSJ Os06g0142650 OSNPB_060142650 P0535G04.27 ENOG411EJQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HEAT repeat family protein Os03g0146600 protein (Fragment) Q0DV64 Q0DV64_ORYSJ Os03g0146600 Os03g0146600 OSNPB_030146600 ENOG411EJQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411EJQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0128300 protein (cDNA clone:J033039P18, full insert sequence) Q0E4A5 Q0E4A5_ORYSJ Os02g0128300 Os02g0128300 OSNPB_020128300 ENOG411EJQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Anaphase promoting complex subunit 1 NA NA NA NA NA NA NA ENOG411EJQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EJQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein Os02g0132600 protein A0A0N7KEM5 A0A0N7KEM5_ORYSJ Os02g0132600 OSNPB_020132600 ENOG411EJQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Mismatch repair protein NA NA NA NA NA NA NA ENOG411EJQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EJQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: WD repeat-containing protein NA NA NA NA NA NA NA ENOG411EJQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: WD repeat domain 91 NA NA NA NA NA NA NA ENOG411EJQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HhH2 NA NA NA NA NA NA NA ENOG411EJQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EJQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nucleoporin 160kDa NA NA NA NA NA NA NA ENOG411EJQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Tar (HIV-1) RNA binding protein 1 Os06g0482066 protein Q67W16 Q67W16_ORYSJ OSJNBa0040M10.13 Os06g0482066 OSNPB_060482066 ENOG411EJQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits (By similarity) Os10g0456900 protein (Fragment) A0A0P0XVA4 A0A0P0XVA4_ORYSJ Os10g0456900 OSNPB_100456900 ENOG411EJQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0462800 protein (Fragment) Q0IX68 Q0IX68_ORYSJ Os10g0462800 OSNPB_100462800 ENOG411EJQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 NA NA NA NA NA NA NA ENOG411EJQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function C-terminus (DUF2451) NA NA NA NA NA NA NA ENOG411EJQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: BRCA1 associated RING domain 1 NA NA NA NA NA NA NA ENOG411EJQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: U3 small nucleolar RNA-associated protein 10 Os04g0548300 protein (Fragment) Q0JB94,A0A0P0WD24 Q0JB94_ORYSJ,A0A0P0WD24_ORYSJ Os04g0548300 Os04g0548300 OSNPB_040548300,Os04g0548300 OSNPB_040548300 ENOG411EJQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os02g0116100 protein A0A0P0VE04 A0A0P0VE04_ORYSJ Os02g0116100 OSNPB_020116100 ENOG411EJQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nucleoporin NA NA NA NA NA NA NA ENOG411EJQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HEAT repeat containing NA NA NA NA NA NA NA ENOG411EJQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HEAT repeat containing Os06g0505100 protein (Fragment) A0A0P0WWZ8 A0A0P0WWZ8_ORYSJ Os06g0505100 OSNPB_060505100 ENOG411EJQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium channel NA NA NA NA NA NA NA ENOG411EJQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Anaphase promoting complex subunit 1 Os05g0354300 protein (Fragment) Q0DIX4 Q0DIX4_ORYSJ Os05g0354300 Os05g0354300 OSNPB_050354300 ENOG411EJQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Beige BEACH domain containing protein Os06g0678700 protein (Fragment) A0A0P0WZW3 A0A0P0WZW3_ORYSJ Os06g0678700 OSNPB_060678700 ENOG411E2XN ATG10 Q8VZ52 ATG10_ARATH Ubiquitin-like-conjugating enzyme ATG10 (EC 6.3.2.-) (Autophagy-related protein 10) (AtATG10) DISRUPTION PHENOTYPE: Mutant atg10-1 cannot form the ATG12-ATG5 conjugate and fails to accumulate autophagic bodies inside the vacuole. Plants are hypersensitive to nitrogen and carbon starvation and initiate senescence and programmed cell death (PCD) more quickly. Reduced anthocyanin levels under anthocyanin-inductive conditions. Development of spreading necrosis upon infection with the necrotrophic fungal pathogen, A.brassicicola, which is accompanied by the production of reactive oxygen intermediates and by enhanced hyphal growth. By contrast, in response to the virulent biotrophic phytopathogen, P.syringae pv. tomato, plants exhibit a marked resistance without spreading necrosis. Enhanced powdery mildew (e.g. G.cichoracearum) resistance. {ECO:0000269|PubMed:18245858, ECO:0000269|PubMed:20085894, ECO:0000269|PubMed:21332848, ECO:0000269|PubMed:21645148}. Reduced fertility (70% fewer seeds) slower bolting (late flowering) and slower growing. Increased sensitivity to nitrogen and carbon deprivation. Slightly slower rosette growth; Reduced fertility; Late flowering; Early senescence; Sensitive to carbon starvation and limited nitrogen-R. Vierstra-2008 FUNCTION: E2-like enzyme involved in autophagy. Acts as an E2-like enzyme that catalyzes the conjugation of ATG12 to ATG5. The ATG12-ATG5 conjugates is required for the formation of autophagic vesicles and for the timely progression of senescence and programmed cell death (PCD). Likely serves as an ATG5-recognition molecule. Confers some resistance to nitrogen and carbon starvation. Is also involved in the formation of anthocyanic vacuolar inclusions (AVI). Promotes an autophagic process that constitutes a pro-survival mechanism by controlling the containment of host tissue-destructive microbial infections during necrotrophic pathogen infection, but negatively controls SA-dependent defenses and basal immunity to bacterial infection during biotrophic infection. {ECO:0000269|PubMed:18245858, ECO:0000269|PubMed:20085894, ECO:0000269|PubMed:21332848, ECO:0000269|PubMed:21645148}. R-ATH-1632852; 6.3.2.- 25621 Ubiquitin-like-conjugating enzyme ATG10 (EC 6.3.2.-) (Autophagy-related protein 10) (AtATG10) integral component of membrane [GO:0016021]; ubiquitin activating enzyme activity [GO:0004839]; autophagy [GO:0006914]; cellular pigment accumulation [GO:0043482]; cellular response to nitrogen starvation [GO:0006995]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; positive regulation of autophagosome assembly [GO:2000786]; response to carbon starvation [GO:0090549] locus:1005716578; AT3G07525 Autophagocytosis associated protein active-site domain Os12g0506800 protein (cDNA clone:J013072A20, full insert sequence),Os04g0497350 protein (cDNA, clone: J065213B04, full insert sequence) B7EPF6,B7F927 B7EPF6_ORYSJ,B7F927_ORYSJ Os12g0506800 OSNPB_120506800,Os04g0497350 OSNPB_040497350 ENOG411E2XJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0189700 protein) Q2QWN1 Q2QWN1_ORYSJ Os12g0189700 LOC_Os12g08790 Os12g0189700 OSNPB_120189700 ENOG411EABB MORC5 F4K2G3 MORC5_ARATH Protein MICRORCHIDIA 5 (AtMORC5) (EC 3.6.-.-) (Protein CRT1-homolog 5) (CRT1-h5) FUNCTION: Exhibits ATPase activity. Binds DNA/RNA in a non-specific manner and exhibits endonuclease activity. Probably involved in DNA repair. Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing. May also be involved in the regulation of chromatin architecture to maintain gene silencing. {ECO:0000250|UniProtKB:Q84WV6}. 3.6.-.- 80919 Protein MICRORCHIDIA 5 (AtMORC5) (EC 3.6.-.-) (Protein CRT1-homolog 5) (CRT1-h5) nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; kinase activity [GO:0016301]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; gene silencing by RNA [GO:0031047]; regulation of chromatin silencing [GO:0031935]; regulation of DNA repair [GO:0006282] locus:2179837; AT5G13130 Inherit from KOG: MORC family CW-type zinc finger NA NA NA NA NA NA NA ENOG411E2XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0572500 protein A0A0P0WDP3 A0A0P0WDP3_ORYSJ Os04g0572500 OSNPB_040572500 ENOG411EABV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stage II sporulation protein E (SpoIIE) NA NA NA NA NA NA NA ENOG411DRJH Q9SAG7,F4ICW3 Q9SAG7_ARATH,F4ICW3_ARATH At1g80930/F23A5_23 (F23A5.29 protein) (MIF4G domain-containing protein / MA3 domain-containing protein),Initiation factor eIF-4 gamma, MA3 R-ATH-72163; 104017,17019 At1g80930/F23A5_23 (F23A5.29 protein) (MIF4G domain-containing protein / MA3 domain-containing protein),Initiation factor eIF-4 gamma, MA3 catalytic step 2 spliceosome [GO:0071013]; cytosol [GO:0005829]; nucleus [GO:0005634]; U2-type catalytic step 1 spliceosome [GO:0071006]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398],catalytic step 2 spliceosome [GO:0071013]; U2-type catalytic step 1 spliceosome [GO:0071006]; RNA binding [GO:0003723]; translation initiation factor activity [GO:0003743]; mRNA splicing, via spliceosome [GO:0000398] locus:2025797;,locus:504956291; AT1G80930,AT1G52325 pre-mRNA-splicing factor cwc-22 Os12g0256300 protein (Pre-mRNA splicing factor cwc22, putative, expressed) (Putative pre-mRNA-splicing factor cwc-22) (cDNA clone:J033075C23, full insert sequence),Os12g0273980 protein (Fragment),Os11g0151600 protein Q2QUQ9,A0A0P0Y905,A0A0P0XZW1 Q2QUQ9_ORYSJ,A0A0P0Y905_ORYSJ,A0A0P0XZW1_ORYSJ Os12g15420 LOC_Os12g15420 Os12g0256300 OSNPB_120256300,Os12g0273980 OSNPB_120273980,Os11g0151600 OSNPB_110151600 ENOG411DRJI Q9SGQ6,A0A1P8AVB2,A0A1P8AVF2,F4I2B7,B6EUA8 PP126_ARATH,A0A1P8AVB2_ARATH,A0A1P8AVF2_ARATH,F4I2B7_ARATH,B6EUA8_ARATH Pentatricopeptide repeat-containing protein At1g76280,Tetratricopeptide repeat (TPR)-like superfamily protein 87759,74410,91320,90814,78358 Pentatricopeptide repeat-containing protein At1g76280,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2014609; AT1G76280 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DRJJ O22918,Q9SIQ2,Q9SIQ3,Q9LMJ3,Q9C648,Q9SJA9,O22927,A0A1P8B2F8 GDL41_ARATH,GDL44_ARATH,GDL43_ARATH,GDL1_ARATH,GDL23_ARATH,GDL39_ARATH,GDL42_ARATH,A0A1P8B2F8_ARATH GDSL esterase/lipase At2g30220 (EC 3.1.1.-) (Extracellular lipase At2g30220),GDSL esterase/lipase At2g31550 (EC 3.1.1.-) (Extracellular lipase At2g31550),GDSL esterase/lipase At2g31540 (EC 3.1.1.-) (Extracellular lipase At2g31540),GDSL esterase/lipase At1g06990 (EC 3.1.1.-) (Extracellular lipase At1g06990),GDSL esterase/lipase At1g58430 (EC 3.1.1.-) (Extracellular lipase At1g58430),GDSL esterase/lipase At2g24560 (EC 3.1.1.-) (Extracellular lipase At2g24560),GDSL esterase/lipase At2g30310 (EC 3.1.1.-) (Extracellular lipase At2g30310),GDSL-like Lipase/Acylhydrolase family protein ARA:AT2G30220-MONOMER;,ARA:GQT-2746-MONOMER;,ARA:AT2G31540-MONOMER;,ARA:AT1G06990-MONOMER;,ARA:AT1G58430-MONOMER;,ARA:AT2G24560-MONOMER;,ARA:AT2G30310-MONOMER; 3.1.1.- 39672,40203,40121,39982,40402,40815,39739,35360 GDSL esterase/lipase At2g30220 (EC 3.1.1.-) (Extracellular lipase At2g30220),GDSL esterase/lipase At2g31550 (EC 3.1.1.-) (Extracellular lipase At2g31550),GDSL esterase/lipase At2g31540 (EC 3.1.1.-) (Extracellular lipase At2g31540),GDSL esterase/lipase At1g06990 (EC 3.1.1.-) (Extracellular lipase At1g06990),GDSL esterase/lipase At1g58430 (EC 3.1.1.-) (Extracellular lipase At1g58430),GDSL esterase/lipase At2g24560 (EC 3.1.1.-) (Extracellular lipase At2g24560),GDSL esterase/lipase At2g30310 (EC 3.1.1.-) (Extracellular lipase At2g30310),GDSL-like Lipase/Acylhydrolase family protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2060869;,locus:2065898;,locus:2065883;,locus:2007402;,locus:2037665;,locus:2046663;,locus:2065737; AT2G30220,AT2G31550,AT2G31540,AT1G06990,AT1G58430,AT2G24560,AT2G30310 GDSL-motif lipase hydrolase family protein Os01g0827700 protein (Putative family II lipase EXL1) Q941W9 Q941W9_ORYSJ B1088C09.9 Os01g0827700 OSNPB_010827700 ENOG411DRJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lignin degradation and detoxification of lignin-derived products (By similarity) Laccase-18 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 18) (Diphenol oxidase 18) (Urishiol oxidase 18),Laccase-19 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 19) (Diphenol oxidase 19) (Urishiol oxidase 19),Laccase-20 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 20) (Diphenol oxidase 20) (Urishiol oxidase 20) Q53LU4,Q2R0L2,Q2R0L0 LAC18_ORYSJ,LAC19_ORYSJ,LAC20_ORYSJ LAC18 Os11g0264000 LOC_Os11g16260 OsJ_032226,LAC19 Os11g0641500 LOC_Os11g42200 OsJ_033252,LAC20 Os11g0641800 LOC_Os11g42220 OsJ_033255 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411DRJM Cand3 B9DFZ1,B9DGA1,Q945Q2,A0A1I9LLB0 B9DFZ1_ARATH,B9DGA1_ARATH,Q945Q2_ARATH,A0A1I9LLB0_ARATH AT3G59090 protein (Tobamovirus multiplication protein),AT3g59090/F17J16_140 (Tobamovirus multiplication protein),Tobamovirus multiplication protein 41117,40579,41686,33980 AT3G59090 protein (Tobamovirus multiplication protein),AT3g59090/F17J16_140 (Tobamovirus multiplication protein),Tobamovirus multiplication protein integral component of membrane [GO:0016021] locus:2077705; AT3G59090 Protein of unknown function (DUF1084) Os01g0751300 protein Q5JMW7 Q5JMW7_ORYSJ Os01g0751300 OSNPB_010751300 P0046E05.27 P0435B05.8 ENOG411DRJN late embryogenesis abundant 26 Q8VZU4,O80576 Q8VZU4_ARATH,O80576_ARATH Expressed protein (Ribosomal protein L2 family) (Uncharacterized protein At2g44065),At2g44060 (Late embryogenesis abundant protein, group 2) (Similar to late embryogenesis abundant proteins) 22842,36036 Expressed protein (Ribosomal protein L2 family) (Uncharacterized protein At2g44065),At2g44060 (Late embryogenesis abundant protein, group 2) (Similar to late embryogenesis abundant proteins) mitochondrial large ribosomal subunit [GO:0005762]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to desiccation [GO:0009269] locus:505006316;,locus:2051749; AT2G44065,AT2G44060 abundant protein Os07g0272300 protein (Fragment),Os03g0843300 protein (Putative late embryogenesis abundant protein) (Salt tolerance protein, putative, expressed) (cDNA clone:001-035-H09, full insert sequence) (cDNA clone:006-311-B05, full insert sequence) (cDNA clone:J023069E08, full insert sequence) Q0D7B2,Q75LD9 Q0D7B2_ORYSJ,Q75LD9_ORYSJ Os07g0272300 Os07g0272300 OSNPB_070272300,OSJNBa0032G11.5 LOC_Os03g62620 Os03g0843300 OSNPB_030843300 ENOG411DRJA Q9FJ08 Q9FJ08_ARATH At5g49320 (Dbj|BAA84605.1) (Transmembrane protein, putative (DUF1218)) 27883 At5g49320 (Dbj|BAA84605.1) (Transmembrane protein, putative (DUF1218)) integral component of membrane [GO:0016021] locus:2155939; AT5G49320 Protein of unknown function (DUF1218) Os01g0253400 protein (cDNA clone:002-152-F09, full insert sequence) Q0JP02 Q0JP02_ORYSJ Os01g0253400 Os01g0253400 OSNPB_010253400 ENOG411DRJB PHYE P42498 PHYE_ARATH Phytochrome E FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. 122516 Phytochrome E intracellular [GO:0005622]; phosphorelay sensor kinase activity [GO:0000155]; photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]; detection of visible light [GO:0009584]; protein-chromophore linkage [GO:0018298]; protein-tetrapyrrole linkage [GO:0017006]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2005536; AT4G18130 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region NA NA NA NA NA NA NA ENOG411DRJC MIP2,MAG2-interacting protein 2 Q9FIN7,F4KH34 MIP2_ARATH,F4KH34_ARATH MAG2-interacting protein 2,Neuroblastoma-amplified sequence protein DISRUPTION PHENOTYPE: Accumulation of the precursors of the two major storage proteins albumin 2S and globulin 12S in dry seeds. {ECO:0000269|PubMed:24118572}. FUNCTION: Required for proper maturation of seed storage proteins. Forms a complex with MAG2, ZW10/MIP1 and MIP3 on the endoplasmic reticulum that may be responsible for efficient transport of seed storage proteins. {ECO:0000269|PubMed:24118572}. 266814,269091 MAG2-interacting protein 2,Neuroblastoma-amplified sequence protein endoplasmic reticulum membrane [GO:0005789]; vacuole [GO:0005773]; protein maturation [GO:0051604]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890]; vacuolar protein processing [GO:0006624],retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2152881; AT5G24350 Secretory pathway protein Sec39 Os12g0233600 protein (Fragment) A0A0P0Y8F6 A0A0P0Y8F6_ORYSJ Os12g0233600 OSNPB_120233600 ENOG411DRJD Q8RWI2 Q8RWI2_ARATH Leucine-rich repeat (LRR) family protein (Uncharacterized protein At5g07910) R-ATH-6803207; 29137 Leucine-rich repeat (LRR) family protein (Uncharacterized protein At5g07910) plasma membrane [GO:0005886] locus:2142773; AT5G07910 LRR repeats and ubiquitin-like domain-containing protein Plant intracellular Ras-group-related LRR protein 7 (Intracellular Ras-group-related LRR protein 7) (OsIRL7) B9F655 PIRL7_ORYSJ IRL7 Os03g0212200 LOC_Os03g11360 OsJ_09890 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20949308}. FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. ENOG411DRJE Q8RWL1,F4IMW2,F4IMW1,F4IMW3 Q8RWL1_ARATH,F4IMW2_ARATH,F4IMW1_ARATH,F4IMW3_ARATH AT2G36360 protein (Galactose oxidase/kelch repeat superfamily protein) (Uncharacterized protein At2g36360),Galactose oxidase/kelch repeat superfamily protein R-ATH-5689603; 55041,56923,55967,57572 AT2G36360 protein (Galactose oxidase/kelch repeat superfamily protein) (Uncharacterized protein At2g36360),Galactose oxidase/kelch repeat superfamily protein locus:2049475; AT2G36360 kelch repeat-containing protein Kelch motif family protein, expressed (Os03g0835800 protein),Kelch motif family protein, expressed (Os03g0835800 protein) (Putative transcription factor) (cDNA clone:J033113E15, full insert sequence) Q10AZ7,Q75LJ6 Q10AZ7_ORYSJ,Q75LJ6_ORYSJ Os03g0835800 LOC_Os03g61950 OsJ_13268 OSNPB_030835800,LOC_Os03g61950 Os03g0835800 OSJNBa0096I06.12 OSNPB_030835800 ENOG411DRJF AGD13,AGD12 Q8LFN9,Q9FVJ3,A0A1P8B3F7 AGD13_ARATH,AGD12_ARATH,A0A1P8B3F7_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 (ARF GAP AGD13) (Protein ARF-GAP DOMAIN 13) (AtAGD13),ADP-ribosylation factor GTPase-activating protein AGD12 (ARF GAP AGD12) (Protein ARF-GAP DOMAIN 12) (AtAGD12) (Zinc- and calcium-binding protein) (AtZAC),ARF-GAP domain 13 FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). {ECO:0000250}.,FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids. 37279,37145,33611 Probable ADP-ribosylation factor GTPase-activating protein AGD13 (ARF GAP AGD13) (Protein ARF-GAP DOMAIN 13) (AtAGD13),ADP-ribosylation factor GTPase-activating protein AGD12 (ARF GAP AGD12) (Protein ARF-GAP DOMAIN 12) (AtAGD12) (Zinc- and calcium-binding protein) (AtZAC),ARF-GAP domain 13 GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; pollen development [GO:0009555],Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; intracellular protein transport [GO:0006886],GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. Low levels of expression in seeds and stems. {ECO:0000269|PubMed:11202441}. locus:2115904;,locus:2127338; AT4G05330,AT4G21160 ADP-ribosylation factor GTPase-activating protein Os02g0198300 protein (Putative zinc finger and C2 domain protein) (cDNA clone:001-022-D08, full insert sequence),Os02g0198300 protein (Fragment),Os06g0609450 protein (Fragment) Q6H738,A0A0P0VG07,A0A0P0WYK6 Q6H738_ORYSJ,A0A0P0VG07_ORYSJ,A0A0P0WYK6_ORYSJ P0026H03.16-1 Os02g0198300 OsJ_05767 OSNPB_020198300,Os02g0198300 OSNPB_020198300,Os06g0609450 OSNPB_060609450 ENOG411DRJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early auxin response protein (Os09g0439800 protein) Q69P88 Q69P88_ORYSJ Dro1 Os09g0439800 OJ1344_B01.21 OSNPB_090439800 ENOG411DRJX CBSX3 Q9LEV3 CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial 22729 CBS domain-containing protein CBSX3, mitochondrial mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; cell redox homeostasis [GO:0045454]; response to salt stress [GO:0009651] locus:2183740; AT5G10860 CBS domain-containing protein CBS domain containing protein, expressed (Os03g0737000 protein) (cDNA clone:001-038-F01, full insert sequence),Os03g0737000 protein (Fragment) Q84R32,A0A0N7KI05 Q84R32_ORYSJ,A0A0N7KI05_ORYSJ OSJNBb0016H12.19 LOC_Os03g52690 Os03g0737000 OSNPB_030737000,Os03g0737000 OSNPB_030737000 ENOG411DRJY Q9LER0 PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770, mitochondrial 105560 Pentatricopeptide repeat-containing protein At5g14770, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT5G14770 Pentatricopeptide repeat-containing protein Os02g0824000 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6K9W7 Q6K9W7_ORYSJ Os02g0824000 OJ1063_D06.7 OJ1136_C04.15 OSNPB_020824000 ENOG411DRJZ NIFU3 Q84RQ7 NIFU3_ARATH NifU-like protein 3, chloroplastic (AtCNfu3) (AtCnfU-IVa) FUNCTION: Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins. {ECO:0000250}. 25657 NifU-like protein 3, chloroplastic (AtCNfu3) (AtCnfU-IVa) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; iron ion binding [GO:0005506]; iron-sulfur cluster binding [GO:0051536]; protein complex scaffold activity [GO:0032947]; structural molecule activity [GO:0005198]; iron-sulfur cluster assembly [GO:0016226]; photosystem I assembly [GO:0048564] TISSUE SPECIFICITY: Predominantly expressed in leaves and floral stalks. {ECO:0000269|PubMed:12553879}. locus:2120745; AT4G25910 NifU-like protein 3 Os06g0694500 protein (Putative Nuclear-encoded plastid gene, NifU1) (cDNA clone:001-017-F09, full insert sequence) (cDNA clone:J013108G13, full insert sequence) Q5Z8I4 Q5Z8I4_ORYSJ Os06g0694500 Os06g0694500 OsJ_22478 OSNPB_060694500 P0550B04.30 P0622F03.5 ENOG411DRJP RMA1 O64425 RMA1_ARATH E3 ubiquitin-protein ligase RMA1 (EC 2.3.2.27) (Protein RING membrane-anchor 1) (RING-type E3 ubiquitin transferase RMA1) DISRUPTION PHENOTYPE: No visible phenotype and no effect on drought stress response, probably due to the redundancy with RMA2 and RMA3. {ECO:0000269|PubMed:19234086}. FUNCTION: E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of aquaporin PIP2-1. Forms a ubiquitin ligase complex in cooperation with the E2 enzymes UCB8/UCB10. {ECO:0000269|PubMed:11329381, ECO:0000269|PubMed:19224217, ECO:0000269|PubMed:19234086}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-382556;R-ATH-901032; 2.3.2.B10; 2.3.2.27 28012 E3 ubiquitin-protein ligase RMA1 (EC 2.3.2.27) (Protein RING membrane-anchor 1) (RING-type E3 ubiquitin transferase RMA1) Derlin-1 retrotranslocation complex [GO:0036513]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ubiquitin-protein transferase activity [GO:0004842]; ER-associated misfolded protein catabolic process [GO:0071712]; protein exit from endoplasmic reticulum [GO:0032527]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous. Highly expressed in roots. {ECO:0000269|PubMed:19224217, ECO:0000269|PubMed:9664717}. locus:2128746; AT4G03510 E3 ubiquitin-protein ligase OSJNBa0074L08.21 protein (OSJNBa0081C01.9 protein) (Os04g0530500 protein) (cDNA clone:001-035-B09, full insert sequence) (cDNA clone:J023063I18, full insert sequence),Os02g0639800 protein (Fragment) Q7X7L7,A0A0P0VM61 Q7X7L7_ORYSJ,A0A0P0VM61_ORYSJ Os04g0530500 OsJ_15560 OSJNBa0074L08.21 OSJNBa0081C01.9 OSNPB_040530500,Os02g0639800 OSNPB_020639800 ENOG411DRJQ Q8VXV0 Q8VXV0_ARATH AT3g52570/F22O6_50 (Alpha/beta-Hydrolases superfamily protein) 37527 AT3g52570/F22O6_50 (Alpha/beta-Hydrolases superfamily protein) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2079899; AT3G52570 domain-containing protein 11-like Os01g0862000 protein (cDNA clone:J023135F13, full insert sequence) Q0JHI5 Q0JHI5_ORYSJ Os01g0862000 Os01g0862000 OSNPB_010862000 ENOG411DRJR A0A1P8AN30,A0A1P8AN34,F4HYK7 A0A1P8AN30_ARATH,A0A1P8AN34_ARATH,F4HYK7_ARATH Protein kinase superfamily protein R-ATH-446652; 37359,45826,51874 Protein kinase superfamily protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2010965; AT1G54820 serine threonine-protein kinase Os05g0398800 protein Q688N0 Q688N0_ORYSJ Os05g0398800 Os05g0398800 OSNPB_050398800 P0605G01.9 ENOG411DRJS MJB21.14 F4K327,F4K328 F4K327_ARATH,F4K328_ARATH Leucine carboxyl methyltransferase 39302,41312 Leucine carboxyl methyltransferase methyltransferase activity [GO:0008168],cytosol [GO:0005829]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2165482; AT5G42760 methyltransferase Methyltransferase, putative, TIGR00027 family protein, expressed (Os03g0775000 protein) Q8H8N5 Q8H8N5_ORYSJ Os03g0775000 LOC_Os03g56370 Os03g0775000 OsJ_12770 OSJNBa0070N04.13 OSNPB_030775000 ENOG411DRJT O80934 Y2766_ARATH Uncharacterized protein At2g37660, chloroplastic 34880 Uncharacterized protein At2g37660, chloroplastic apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; thylakoid [GO:0009579]; copper ion binding [GO:0005507]; defense response to bacterium [GO:0042742] locus:2040716; AT2G37660 3-beta hydroxysteroid dehydrogenase/isomerase family Expressed protein (Os03g0822200 protein) (cDNA clone:006-208-E08, full insert sequence) (cDNA clone:006-305-C03, full insert sequence) (cDNA clone:J023017D04, full insert sequence),Os05g0110300 protein (Fragment) Q852A3,A0A0P0WH35,A0A0N7KK10 Q852A3_ORYSJ,A0A0P0WH35_ORYSJ,A0A0N7KK10_ORYSJ OSJNBb0081B07.22 LOC_Os03g60740 Os03g0822200 OsJ_13157 OSNPB_030822200,Os05g0110300 OSNPB_050110300 ENOG411DRJU A0A1P8B7X7,Q9SZW6 A0A1P8B7X7_ARATH,Q9SZW6_ARATH DUF630 family protein (DUF630 and DUF632),DUF630 family protein (DUF630 and DUF632) (Uncharacterized protein AT4g30130) (Uncharacterized protein F6G3.160) 61242,81800 DUF630 family protein (DUF630 and DUF632),DUF630 family protein (DUF630 and DUF632) (Uncharacterized protein AT4g30130) (Uncharacterized protein F6G3.160) locus:2126510; AT4G30130 Protein of unknown function (DUF630) Os02g0175200 protein,Os02g0175301 protein A0A0P0VFJ4,A0A0P0VFB8 A0A0P0VFJ4_ORYSJ,A0A0P0VFB8_ORYSJ Os02g0175200 OSNPB_020175200,Os02g0175301 OSNPB_020175301 ENOG411DRJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter Os07g0288700 protein (Putative ABC transporter family protein) (cDNA clone:J023027L20, full insert sequence),ABC transporter family protein-like (Os07g0288700 protein) Q7EY81,Q7XI02 Q7EY81_ORYSJ,Q7XI02_ORYSJ B1126F07.104-1 P0438G07.112-1 Os07g0288700 OSNPB_070288700,P0438G07.112-2 B1126F07.104-2 Os07g0288700 OSNPB_070288700 ENOG411DRJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-) (Fragment) Q0IRW1 Q0IRW1_ORYSJ Os11g0592300 Os11g0592300 OSNPB_110592300 ENOG411DRJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0462200 protein (cDNA clone:J023136H13, full insert sequence) Q6K4Z1 Q6K4Z1_ORYSJ Os02g0462200 Os02g0462200 OsJ_06642 OSJNBa0035A24.3 OSNPB_020462200 P0644G05.36 ENOG411DRJ9 Q9SGU7,A0A1P8AS55 Q9SGU7_ARATH,A0A1P8AS55_ARATH At1g64680 (Beta-carotene isomerase D27) (F1N19.25) (Uncharacterized protein At1g64680),Beta-carotene isomerase D27 28163,23173 At1g64680 (Beta-carotene isomerase D27) (F1N19.25) (Uncharacterized protein At1g64680),Beta-carotene isomerase D27 chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; isomerase activity [GO:0016853],isomerase activity [GO:0016853] locus:2010856; AT1G64680 NA Os08g0114100 protein Q6YXS1 Q6YXS1_ORYSJ Os08g0114100 Os08g0114100 OSNPB_080114100 P0427G12.10 ENOG411DRJ0 CHLI1,CHLI2 P16127,Q5XF33 CHLI1_ARATH,CHLI2_ARATH Magnesium-chelatase subunit ChlI-1, chloroplastic (Mg-chelatase subunit I-1) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlI-1) (Protein CHLORINA 42),Magnesium-chelatase subunit ChlI-2, chloroplastic (Mg-chelatase subunit I-2) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlI-2) DISRUPTION PHENOTYPE: Homozygous mutants are chlorotic lethal when grown on soil, but can grow on sucrose-containing medium. {ECO:0000269|PubMed:11842180, ECO:0000269|PubMed:15815918, ECO:0000269|PubMed:2158442}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants show slight decrease in chlorophyll content. Chli1 and chli2 double mutants are albino. {ECO:0000269|PubMed:18846282, ECO:0000269|PubMed:19363094}. Does not accumulate protoporphyrin IX in the presence of acifluorfen whilst wildtype accumulates up to three times more than in the absence of the herbicide.,More than 80% of the mutants could grow in the presence of 500nM of the PPOX inhibitor acifluorfen while 50% and 100% of wildtype seedlings failed to grown on plates containing 50 and 100nM respectively.,The rate of 5-aminolevulinate (ALA) is one-third of that seen in wildtype most likely reflecting feedback inhibition.,When grown on soil or Kvitko medium the homozygous line dies at the cotyledon stage. On medium supplemented with sucrose the same mutant develops to the flowering stage.,Yellow-green leaves and stems from the juvenile stage until the beginning of flowering. At these stages of development the levels of chlorophylls and carotenoids in the mutant are approximately half of that of wildtype.,Viable pale green phenotype. 40% of WT Chl levels.,Seedling lethal. Albino. Accumulates 3% of WT Chl levels.,Visually WT. However accumulates significantly less Chl levels than WT. Seedling lethal; Albino seedlings; Yellow-green embryos; Delayed germination; Resistant to acifluorfen (herbicide); Heterozygotes: Yellow-green leaves and stems-B. Grimm-2005 FUNCTION: Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. The magnesium-chelatase is a complex of three subunits, CHLI, CHLD and CHLH. The reaction takes place in two steps, with an ATP-dependent activation followed by an ATP-dependent chelation step. Possesses high affinity for ATP and may play a major role in chlorophyll biosynthesis. Does not bind abscisic acid (ABA), but is a positive regulator of ABA signaling. {ECO:0000269|PubMed:11842180, ECO:0000269|PubMed:15815918, ECO:0000269|PubMed:17472958, ECO:0000269|PubMed:18846282, ECO:0000269|PubMed:23011401}.,FUNCTION: Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. The reaction takes place in two steps, with an ATP-dependent activation followed by an ATP-dependent chelation step. Possesses low affinity for ATP and may play a limited role in chlorophyll biosynthesis, and contributes to the assembly of the Mg-chelatase complex. {ECO:0000269|PubMed:18846282, ECO:0000269|PubMed:19363094}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT4G18480-MONOMER;MetaCyc:MONOMER1F-75;,ARA:AT5G45930-MONOMER; 6.6.1.1 46270,46098 Magnesium-chelatase subunit ChlI-1, chloroplastic (Mg-chelatase subunit I-1) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlI-1) (Protein CHLORINA 42),Magnesium-chelatase subunit ChlI-2, chloroplastic (Mg-chelatase subunit I-2) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlI-2) cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; magnesium chelatase complex [GO:0010007]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; magnesium chelatase activity [GO:0016851]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979]; response to cytokinin [GO:0009735],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; magnesium chelatase complex [GO:0010007]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; magnesium chelatase activity [GO:0016851]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11842180}. locus:2005500;,locus:2152405; AT4G18480,AT5G45930 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX. The Magnesium-chelatase subunit ChlI, chloroplastic (Mg-chelatase subunit I) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlI) (Protein CHLORINA 9) Q53RM0 CHLI_ORYSJ CHLI CHL9 Os03g0563300 LOC_Os03g36540 OsJ_11451 FUNCTION: Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. The reaction takes place in two steps, with an ATP-dependent activation followed by an ATP-dependent chelation step. {ECO:0000269|PubMed:16915519, ECO:0000269|PubMed:22226678}. ENOG411DRJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q5VME5 Q5VME5_ORYSJ Os06g0289900 B1026E06.3 OsJ_33480 OSNPB_060289900 ENOG411DRJ2 RPL18B,RPL18A,RPL18C,RPL18 P42791,O22254,Q940B0,A0A1I9LT16,A0A1P8BGQ0 RL182_ARATH,RL181_ARATH,RL183_ARATH,A0A1I9LT16_ARATH,A0A1P8BGQ0_ARATH 60S ribosomal protein L18-2,Putative 60S ribosomal protein L18-1,60S ribosomal protein L18-3,Ribosomal protein L18,Ribosomal protein L18e/L15 superfamily protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 20926,20994,20967,14857,14900 60S ribosomal protein L18-2,Putative 60S ribosomal protein L18-1,60S ribosomal protein L18-3,Ribosomal protein L18,Ribosomal protein L18e/L15 superfamily protein chloroplast [GO:0009507]; cytosolic large ribosomal subunit [GO:0022625]; large ribosomal subunit [GO:0015934]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:7875584}. locus:2078077;,locus:2143330; AT3G05590,AT2G47570,AT5G27850 60S ribosomal protein L18 60S ribosomal protein L18, putative, expressed (Os03g0341100 protein),Os07g0674700 protein (Putative cytoplasmic ribosomal protein L18) (cDNA clone:J013060D13, full insert sequence),Cytoplasmic ribosomal protein L18 (Os05g0155100 protein) (cDNA clone:001-042-C09, full insert sequence) (cDNA clone:J023027I12, full insert sequence) Q10LN7,Q6ZDW5,Q5WMY3 Q10LN7_ORYSJ,Q6ZDW5_ORYSJ,Q5WMY3_ORYSJ LOC_Os03g22180 Os03g0341100 OsJ_10788 OSNPB_030341100,P0618H09.15 Os07g0674700 OsJ_25556 OSNPB_070674700 P0037D09.17,Os05g0155100 OsJ_17172 OSNPB_050155100 P0431G05.5 ENOG411DRJ3 TBL16,TBL15,TBL14 F4K5L5,O80940,Q0WPS0,A0A1P8BFS1 TBL16_ARATH,TBL15_ARATH,TBL14_ARATH,A0A1P8BFS1_ARATH Protein trichome birefringence-like 16,Protein trichome birefringence-like 15,Protein trichome birefringence-like 14,TRICHOME BIREFRINGENCE-LIKE 16 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 62316,54168,46105,51495 Protein trichome birefringence-like 16,Protein trichome birefringence-like 15,Protein trichome birefringence-like 14,TRICHOME BIREFRINGENCE-LIKE 16 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],chloroplast [GO:0009507]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2180399;,locus:2040696;,locus:2160796; AT5G20680,AT2G37720,AT5G64020 expressed protein Os09g0397400 protein (cDNA clone:001-124-F01, full insert sequence) Q0J225 Q0J225_ORYSJ Os09g0397400 Os09g0397400 OSNPB_090397400 ENOG411DRJ4 Q9FKB3 PANC_ARATH Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantoate-activating enzyme) (Pantothenate synthetase) DISRUPTION PHENOTYPE: Embryonic lethality due to arrest of embryogenesis at the preglobular stage when homozygous. {ECO:0000269|PubMed:17932772}. pts-1 heterozygous mutants do not display any obvious phenotypic abnormalities in plant size pigmentation leaf development or flower development. However they produce a 3:1 ratio of viable to deformed seed upon self-fertilization. The deformed seed turn pale white and then dark brown during the greening stage. The deformed seeds contain embryos arrested at the preglobular stage.,pts-2 heterozygous mutants do not display any obvious phenotypic abnormalities in plant size pigmentation leaf development or flower development. However they produce a 3:1 ratio of viable to deformed seed upon self-fertilization. The deformed seed turn pale white and then dark brown during the greening stage. The deformed seeds contain embryos arrested at the preglobular stage. Embryo defective; Preglobular-U. Genschel-2008 FUNCTION: Catalyzes the condensation of pantoate with beta-alanine to form pantothenate. Essential for panthotenate biosynthesis. {ECO:0000269|PubMed:17040917, ECO:0000269|PubMed:17932772}. PATHWAY: Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantothenate from (R)-pantoate and beta-alanine: step 1/1. ARA:AT5G48840-MONOMER;MetaCyc:AT5G48840-MONOMER; 6.3.2.1; Biosynthesis of secondary metabolites (01110),beta-Alanine metabolism (00410),Pantothenate and CoA biosynthesis (00770),Metabolic pathways (01100) 6.3.2.1 34137 Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantoate-activating enzyme) (Pantothenate synthetase) cytosol [GO:0005829]; ATP binding [GO:0005524]; pantoate-beta-alanine ligase activity [GO:0004592]; protein homodimerization activity [GO:0042803]; embryo development ending in seed dormancy [GO:0009793]; pantothenate biosynthetic process [GO:0015940]; pantothenate biosynthetic process from valine [GO:0033317] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, stems, cauline leaves, stigma, sepals and petals. {ECO:0000269|PubMed:17932772}. locus:2156564; AT5G48840 Pantoate-beta-alanine ligase Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantoate-activating enzyme) (Pantothenate synthetase),Os03g0851800 protein (Fragment) O24210,A0A0P0W5J4 PANC_ORYSJ,A0A0P0W5J4_ORYSJ PANC Os03g0851800 LOC_Os03g63490 OSJNBa0015N08.21,Os03g0851800 OSNPB_030851800 FUNCTION: Catalyzes the condensation of pantoate with beta-alanine to form pantothenate. Essential for panthotenate biosynthesis (Probable). {ECO:0000305|PubMed:10417331}. ENOG411DRJ5 NAGLU,CYL1 Q9FNA3,A0A1P8B9A7 NAGLU_ARATH,A0A1P8B9A7_ARATH Alpha-N-acetylglucosaminidase (EC 3.2.1.50) (N-acetyl-glucosaminidase) (AtNAGLU) (Protein CYCLOPS 1),Alpha-N-acetylglucosaminidase family / NAGLU family DISRUPTION PHENOTYPE: Embryonic lethality when homozygous, due to embryo development arrested at one-cell stage. {ECO:0000269|PubMed:18782908}. Embryo defective; Preglobular-M. Devic-2008 FUNCTION: Involved in the remodeling of the N-acetyl-glucosamine residues of proteoglycan complexes during reproductive development. Is essential to promote the first divisions of the zygote. {ECO:0000305|PubMed:18782908}. ARA:AT5G13690-MONOMER; R-ATH-2024096; 3.2.1.50 92689,70972 Alpha-N-acetylglucosaminidase (EC 3.2.1.50) (N-acetyl-glucosaminidase) (AtNAGLU) (Protein CYCLOPS 1),Alpha-N-acetylglucosaminidase family / NAGLU family vacuole [GO:0005773]; alpha-N-acetylglucosaminidase activity [GO:0004561]; embryo development ending in seed dormancy [GO:0009793]; metabolic process [GO:0008152]; positive regulation of cell division [GO:0051781] DEVELOPMENTAL STAGE: Expressed during early and late male gametogenesis, and in cells of the embryo sac at the time of fertilization. After fertilization, expressed in the embryo, suspensor, and endosperm until the cotyledon stage embryo. {ECO:0000269|PubMed:18782908}. locus:2173209; AT5G13690 K01205 alpha-N-acetylglucosaminidase EC 3.2.1.50 Os04g0650900 protein (Fragment) C7J0T5 C7J0T5_ORYSJ Os04g0650900 Os04g0650900 OSNPB_040650900 ENOG411DRJ6 TIF3C1,TIF3C2 O49160,F4J1N5 EIF3C_ARATH,F4J1N5_ARATH Eukaryotic translation initiation factor 3 subunit C (eIF3c) (Eukaryotic translation initiation factor 3 subunit 8) (eIF3 p110) (p105),Eukaryotic translation initiation factor 3 subunit C (eIF3c) (Eukaryotic translation initiation factor 3 subunit 8) (eIF3 p110) FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03002}.,FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03002}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 102949,91708 Eukaryotic translation initiation factor 3 subunit C (eIF3c) (Eukaryotic translation initiation factor 3 subunit 8) (eIF3 p110) (p105),Eukaryotic translation initiation factor 3 subunit C (eIF3c) (Eukaryotic translation initiation factor 3 subunit 8) (eIF3 p110) cytosol [GO:0005829]; eukaryotic translation initiation factor 3 complex [GO:0005852]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369]; translational initiation [GO:0006413],eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446]; translational initiation [GO:0006413] locus:2078456;,locus:2084538; AT3G56150,AT3G22860 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit C (eIF3c) (Eukaryotic translation initiation factor 3 subunit 8) (eIF3 p110),Os02g0123300 protein (Fragment) Q84LG6,A0A0P0VEC0 Q84LG6_ORYSJ,A0A0P0VEC0_ORYSJ P0474G09.113 Os07g0124500 OSNPB_070124500,Os02g0123300 OSNPB_020123300 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03002}. ENOG411DRJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor C-2b (Heat stress transcription factor 16) (OsHsf-16),Os06g0553100 protein Q0DBL6,A0A0P0WXT9 HFC2B_ORYSJ,A0A0P0WXT9_ORYSJ HSFC2B HSF16 Os06g0553100 LOC_Os06g35960 P0427B07.22,Os06g0553100 OSNPB_060553100 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411E84Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0412400 protein) (cDNA clone:002-168-B05, full insert sequence) Q852E7 Q852E7_ORYSJ LOC_Os03g29930 Os03g0412400 Os03g29930 OJ1212_C05.20 OsJ_11249 OSNPB_030412400 ENOG411E84V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0595001 protein Q8L4R5 Q8L4R5_ORYSJ Os01g0595001 B1103C09.10 OsJ_02455 OSNPB_010595001 P0451D05.23 ENOG411E7I2 Q1G3M6 Q1G3M6_ARATH Bric-a-brac protein 7152 Bric-a-brac protein locus:4515103054; AT3G11591 NA NA NA NA NA NA NA NA ENOG411E7IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0281200 protein (cDNA clone:J023133M08, full insert sequence) Q6Z356 Q6Z356_ORYSJ Os07g0281200 OSNPB_070281200 P0557D09.21 ENOG411E7IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0196200 protein Q69YA5 Q69YA5_ORYSJ Os06g0196200 OSNPB_060196200 P0528E04.22 ENOG411E7IW ZFP1 Q42485 ZFP1_ARATH Zinc finger protein 1 (AtZFP1) FUNCTION: May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}. MISCELLANEOUS: Seeds over-expressing ZFP1 are insensitive to inhibition of germination by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. 25468 Zinc finger protein 1 (AtZFP1) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; photomorphogenesis [GO:0009640] TISSUE SPECIFICITY: Highly expressed in the shoot apex, including the apical meristem, developing leaves and developing vascular system. {ECO:0000269|PubMed:10794528, ECO:0000305|PubMed:8980531}. locus:2025777; AT1G80730 zinc finger protein NA NA NA NA NA NA NA ENOG411E7IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7IS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0445900 protein (Fragment) A0A0P0WB75 A0A0P0WB75_ORYSJ Os04g0445900 OSNPB_040445900 ENOG411E7IR SMAP1 Q9T0H2 SMAP1_ARATH Small acidic protein 1 DISRUPTION PHENOTYPE: No visible phenotype, except a longer hypocotyle in light-grown seedlings. {ECO:0000269|PubMed:16923017}. Responds to IAA NAA but not to 24-D. Resistant to 2,4-D and PCIB (toxic anti-auxin)-Y. Oono-2006 FUNCTION: Mediates responses to the synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D). Not involved in the response to indole-3-acetic acid (IAA). Interacts with RUB modification-related components and may regulate the cullin-ring ubiquitin E3 ligase complex (CRL) activity. {ECO:0000269|PubMed:16923017, ECO:0000269|PubMed:22576848}. 6942 Small acidic protein 1 auxin-activated signaling pathway [GO:0009734]; regulation of gene expression, epigenetic [GO:0040029]; response to auxin [GO:0009733] TISSUE SPECIFICITY: Expressed in roots, flowers, siliques, stems, leaves and seeds. In flowers, detected in petals, anthers and pistils. {ECO:0000269|PubMed:19307045}. locus:2140887; AT4G13520 NA NA NA NA NA NA NA NA ENOG411E7IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DU6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transmembrane protein 135 NA NA NA NA NA NA NA ENOG411DZCB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A3 (Alpha-expansin-3) (OsEXP3) (OsEXPA3) (OsaEXPa1.18) (RiExD),Expansin-A33 (Alpha-expansin-33) (OsEXP33) (OsEXPA33) Q40637,P0C1Y4 EXPA3_ORYSJ,EXP33_ORYSJ EXPA3 EXP3 Os05g0276500 LOC_Os05g19570,EXPA33 EXP33 Os05g0277000 LOC_Os05g19600 OsJ_17883 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DZII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Zinc finger CCCH domain-containing protein 50 (OsC3H50) (Protein ZF) Q84SL2 C3H50_ORYSJ Os07g0568300 LOC_Os07g38090 OJ1092_A07.129 OsJ_023829 ENOG411DZIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 20 Os03g0224300 protein (Fragment) Q0DTU6 Q0DTU6_ORYSJ Os03g0224300 Os03g0224300 OSNPB_030224300 ENOG411DX14 MFC16.11 Q5PP70,A0A1P8BAV6 NTM1_ARATH,A0A1P8BAV6_ARATH Alpha N-terminal protein methyltransferase 1 (EC 2.1.1.244) (X-Pro-Lys N-terminal protein methyltransferase 1) (NTM1),Alpha amino-terminal protein methyltransferase FUNCTION: Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif (By similarity). {ECO:0000250}. 2.1.1.244 31247,31236 Alpha N-terminal protein methyltransferase 1 (EC 2.1.1.244) (X-Pro-Lys N-terminal protein methyltransferase 1) (NTM1),Alpha amino-terminal protein methyltransferase cytoplasm [GO:0005737]; methyltransferase activity [GO:0008168]; N-terminal protein amino acid methylation [GO:0006480],methyltransferase activity [GO:0008168]; N-terminal protein amino acid methylation [GO:0006480] AT5G44450 N-terminal protein methyltransferase Alpha N-terminal protein methyltransferase 1 (EC 2.1.1.244) (X-Pro-Lys N-terminal protein methyltransferase 1) (NTM1),Os03g0780900 protein Q10CT5,A0A0P0W3N7 NTM1_ORYSJ,A0A0P0W3N7_ORYSJ Os03g0780900 LOC_Os03g56830 OsJ_12812 OSJNBa0091J19.10,Os03g0780900 OSNPB_030780900 FUNCTION: Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif (By similarity). {ECO:0000250}. ENOG411E7KY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0799400 protein Q10C05 Q10C05_ORYSJ Os03g0799400 LOC_Os03g58510 OSNPB_030799400 ENOG411E7KX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0640900 protein A0A0P0Y4N7 A0A0P0Y4N7_ORYSJ Os11g0640900 OSNPB_110640900 ENOG411E7KZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7KQ T20M3.17 Q9MA36 Q9MA36_ARATH T20M3.17 protein 51016 T20M3.17 protein locus:1009023116; AT1G05894 NA NA NA NA NA NA NA NA ENOG411E7KS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger NA NA NA NA NA NA NA ENOG411E7KR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0416800 protein (Fragment) A0A0N7KPV1 A0A0N7KPV1_ORYSJ Os08g0416800 OSNPB_080416800 ENOG411E7KU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II reaction centre X protein (PsbX) Os03g0343900 protein (Fragment) A0A0P0VXD4 A0A0P0VXD4_ORYSJ Os03g0343900 OSNPB_030343900 ENOG411E7KW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7KI PMEI1 Q9LNF2,Q1G390,Q1G3A4,Q1G3V3 PMEI1_ARATH,Q1G390_ARATH,Q1G3A4_ARATH,Q1G3V3_ARATH Pectinesterase inhibitor 1 (Pectin methylesterase inhibitor 1) (AtPMEI1),Plant invertase/pectin methylesterase inhibitor superfamily protein FUNCTION: Inhibits pectin methylesterase (PME) from flowers and siliques (PubMed:14675772). Inhibits PME from leaves (PubMed:14741367). {ECO:0000269|PubMed:14675772, ECO:0000269|PubMed:14741367}. 18967,21987,21764,20601 Pectinesterase inhibitor 1 (Pectin methylesterase inhibitor 1) (AtPMEI1),Plant invertase/pectin methylesterase inhibitor superfamily protein apoplast [GO:0048046]; cell periphery [GO:0071944]; pollen tube tip [GO:0090404]; pectinesterase inhibitor activity [GO:0046910]; pollen tube growth [GO:0009860],cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910],pectinesterase inhibitor activity [GO:0046910] TISSUE SPECIFICITY: Highest expression in flowers (PubMed:14675772, PubMed:14741367, PubMed:17971035). Expressed exclusively at the pollen tube tip (PubMed:14675772, PubMed:17971035). {ECO:0000269|PubMed:14675772, ECO:0000269|PubMed:14741367, ECO:0000269|PubMed:17971035}. locus:2023797;,locus:4515103335;,locus:4515103146;,locus:4515102518; AT1G48020,AT4G03945,AT3G27999,AT1G11362 pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E7KH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0781300 protein) (cDNA clone:J013158J07, full insert sequence) Q9AY69 Q9AY69_ORYSJ OSJNBa0091J19.23 LOC_Os03g56860 Os03g0781300 OsJ_12815 OSNPB_030781300 ENOG411E7KK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0022H21.10 protein (Os04g0475400 protein) Q7XKU7 Q7XKU7_ORYSJ OSJNBa0022H21.10 Os04g0475400 OSNPB_040475400 ENOG411E7KM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0482600 protein (cDNA clone:001-113-A07, full insert sequence) B7E8C3 B7E8C3_ORYSJ Os04g0482600 OsJ_15223 OSNPB_040482600 ENOG411E7KN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Abscisic stress ripening protein 2 OSJNBb0088C09.10 protein (Os04g0423400 protein),ABA/WDS induced protein, expressed (Abscisic acid-and stress-induced protein-rice) (Os11g0167800 protein) (cDNA clone:001-035-D06, full insert sequence) (cDNA clone:001-041-E02, full insert sequence) (cDNA clone:001-207-A11, full insert sequence) (cDNA clone:J013000K20, full insert sequence) Q7XJY1,Q53JF7 Q7XJY1_ORYSJ,Q53JF7_ORYSJ Os04g0423400 Os04g0423400 OSJNBb0088C09.10 OSNPB_040423400,LOC_Os11g06720 Os11g0167800 OsJ_33099 OSNPB_110167800 ENOG411E7KA ERF019 O80542 ERF19_ARATH Ethylene-responsive transcription factor ERF019 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 15816 Ethylene-responsive transcription factor ERF019 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to water deprivation [GO:0042631]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2199711; AT1G22810 Transcription factor Os05g0420300 protein,Os01g0885900 protein Q60DV7,A0A0P0VBD5 Q60DV7_ORYSJ,A0A0P0VBD5_ORYSJ Os05g0420300 OSNPB_050420300 P0426G01.15,Os01g0885900 OSNPB_010885900 ENOG411E7KC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of NA NA NA NA NA NA NA ENOG411E7KB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA abscisic stress-ripening protein Os02g0543000 protein (Putative abscisic acid response protein),Os02g0543000 protein,Os02g0543000 protein (Putative ASR2) (cDNA clone:001-108-D04, full insert sequence) (cDNA clone:J013066K05, full insert sequence),Os01g0959100 protein (Putative fruit-ripening protein) (cDNA clone:001-110-F01, full insert sequence) Q6ESY5,Q6ESY3,Q6ESY4,Q6ESY6,Q8S2D0 Q6ESY5_ORYSJ,Q6ESY3_ORYSJ,Q6ESY4_ORYSJ,Q6ESY6_ORYSJ,Q8S2D0_ORYSJ P0472F10.20-3 Os02g0543000 OSNPB_020543000,P0472F10.20-4 Os02g0543000 OSNPB_020543000,P0472F10.20-1 Os02g0543000 OSNPB_020543000,P0472F10.20-2 Os02g0543000 OSNPB_020543000,Os01g0959100 OsJ_04834 OSNPB_010959100 P0401G10.12 ENOG411E7KE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0133600 protein (cDNA clone:J033118M03, full insert sequence),Expressed protein (Os11g0136701 protein) Q2QY36,A3C8E0 Q2QY36_ORYSJ,A3C8E0_ORYSJ Os12g0133600 LOC_Os12g03980 Os12g0133600 OsJ_32885 OSNPB_120133600,Os11g0136701 LOC_Os11g04174 OsJ_32876 OSNPB_110136701 ENOG411E7KD F17A9.4 Q9M910 Q9M910_ARATH At3g06890 (F17A9.4 protein) (Transmembrane protein) (Uncharacterized protein At3g06890) 13264 At3g06890 (F17A9.4 protein) (Transmembrane protein) (Uncharacterized protein At3g06890) integral component of membrane [GO:0016021] locus:2077617; AT3G06890 NA Expressed protein (Os03g0343800 protein),Os07g0673801 protein (Fragment) Q10LL8,C7J4R1 Q10LL8_ORYSJ,C7J4R1_ORYSJ Os03g0343800 LOC_Os03g22360 Os03g0343800 OsJ_10804 OSNPB_030343800,Os07g0673801 Os07g0673801 OSNPB_070673801 ENOG411E7KG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7KF F7A19.14 Q9LZL1,Q9XI82,F4HUE8 Q9LZL1_ARATH,Q9XI82_ARATH,F4HUE8_ARATH GCK domain-containing protein (Uncharacterized protein T7H20_260),F7A19.14 protein (GCK domain-containing protein) (Uncharacterized protein At1g14050) (Uncharacterized protein At1g14060/At1g14050),GCK domain-containing protein 18504,19427,11615 GCK domain-containing protein (Uncharacterized protein T7H20_260),F7A19.14 protein (GCK domain-containing protein) (Uncharacterized protein At1g14050) (Uncharacterized protein At1g14060/At1g14050),GCK domain-containing protein locus:2185203;,locus:2014814;,locus:4515102528; AT5G02210,AT1G14060,AT1G14048 GCK domain Expressed protein (Os03g0647400 protein) (cDNA clone:J033051B07, full insert sequence),Os07g0158400 protein Q60DK0,Q6Z128 Q60DK0_ORYSJ,Q6Z128_ORYSJ Os03g0647400 LOC_Os03g44520 Os03g0647400 OsJ_11900 OSNPB_030647400,Os07g0158400 OsJ_23150 OSNPB_070158400 P0455F03.24 ENOG411E7K9 RPS30A; RPS30B; RPS30C P49689 RS30_ARATH 40S ribosomal protein S30 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 6887 40S ribosomal protein S30 cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2051985;locus:2118244;locus:2164986; AT2G19750AT4G29390;AT5G56670; 40s ribosomal protein 40S ribosomal protein S30 Q6K853 Q6K853_ORYSJ Os02g0804100 Os06g0172600 OJ1548_F12.5 OSJNBa0014B15.12 OSNPB_020804100 OSNPB_060172600 P0689B12.40 ENOG411E7K8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E7K1 F4ICS8,F4I7W9 F4ICS8_ARATH,F4I7W9_ARATH DNAse I-like superfamily protein 70562,47773 DNAse I-like superfamily protein locus:2029122;,locus:2826513; AT1G43760,AT1G40390 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E7K0 RIC1 F4IVV0 RIC1_ARATH CRIB domain-containing protein RIC1 (ROP-interactive CRIB motif-containing protein 1) (Target of ROP protein RIC1) DISRUPTION PHENOTYPE: Reduced primary root elongation. {ECO:0000269|PubMed:15766531, ECO:0000269|PubMed:19818614, ECO:0000269|PubMed:23078108}. Derived from Weigel Activation tagged line- . Mutants have fewer and shorter cortical microtubule arrays. Disorganized microtubules in pavement cells-Z. Yang-2005 "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Required for cortical microtubule organization. Promotes microtubule bundling and formation of well-ordered microtubule arrays in the neck region of pavement cells. This restricts cell lateral expansion to generate the narrow neck morphology of pavement cells. Its function is inhibited when it interacts with activated ARAC4/ROP2. Represses ARAC4/ROP2 activation and antagonizes the RIC4-actin pathway that promotes the assembly of cortical actin microfilaments. Acts as downstream effector of ARAC3/ROP6 which functions in a signaling pathway that negatively regulates clathrin-mediated endocytosis and internalization of PIN1 and PIN2. Required for the asymmetric auxin distribution during root gravitropism and vascular patterning. Positively regulates auxin responses, but negatively regulates ABA responses during lateral root development and primary root elongation. {ECO:0000269|PubMed:11752391, ECO:0000269|PubMed:15766531, ECO:0000269|PubMed:19818614, ECO:0000269|PubMed:21535258, ECO:0000269|PubMed:22683261, ECO:0000269|PubMed:23078108}." MISCELLANEOUS: Over-expression of RIC1 in tobacco germinating pollen reduces pollen tube elongation. {ECO:0000305|PubMed:11752391}. 24140 CRIB domain-containing protein RIC1 (ROP-interactive CRIB motif-containing protein 1) (Target of ROP protein RIC1) apical plasma membrane [GO:0016324]; cortical microtubule, transverse to long axis [GO:0010005]; cell morphogenesis [GO:0000902]; cellulose microfibril organization [GO:0010215]; cytoplasmic microtubule organization [GO:0031122]; multicellular organism development [GO:0007275]; pollen tube growth [GO:0009860]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in columella cells from the root tip and epidermal cells at the base of lateral roots, leaves, stems, flowers, anthers, pollen and siliques. {ECO:0000269|PubMed:11752391, ECO:0000269|PubMed:23078108}. locus:2051033; AT2G33460 Rop-interactive crib motif-containing protein 1 NA NA NA NA NA NA NA ENOG411E7K3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os01g0518300 protein A0A0P0V3B5 A0A0P0V3B5_ORYSJ Os01g0518300 OSNPB_010518300 ENOG411E7K2 P92567,P92543,Q3EC48 M1410_ARATH,M1110_ARATH,Q3EC48_ARATH Uncharacterized mitochondrial protein AtMg01410 (ORF204),Uncharacterized mitochondrial protein AtMg01110 (ORF251),Mitovirus RNA-dependent RNA polymerase MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07749) is not demonstrated. 22814,28112,27476 Uncharacterized mitochondrial protein AtMg01410 (ORF204),Uncharacterized mitochondrial protein AtMg01110 (ORF251),Mitovirus RNA-dependent RNA polymerase mitochondrion [GO:0005739],RNA-directed 5'-3' RNA polymerase activity [GO:0003968] locus:504954624;,locus:504954594;,locus:504955924; ATMG01410,ATMG01110,AT2G07749 Mitovirus RNA-dependent RNA polymerase NA NA NA NA NA NA NA ENOG411E7K5 O22783,F4I5P7 O22783_ARATH,F4I5P7_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein (Uncharacterized protein At2g33320),Calcium-dependent lipid-binding (CaLB domain) family protein 66581,66815 Calcium-dependent lipid-binding (CaLB domain) family protein (Uncharacterized protein At2g33320),Calcium-dependent lipid-binding (CaLB domain) family protein membrane [GO:0016020] locus:2051169;,locus:2197868; AT2G33320,AT1G04540 C2 domain NA NA NA NA NA NA NA ENOG411E7K4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E7K7 Q9C908 Q9C908_ARATH Homeobox-like protein (Uncharacterized protein F1O17.11) 34053 Homeobox-like protein (Uncharacterized protein F1O17.11) DNA binding [GO:0003677] locus:2019632; AT1G74220 NA NA NA NA NA NA NA NA ENOG411EKZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DY8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase D-mannose binding lectin family protein, expressed (Os03g0221700 protein) (Putative receptor-like protein kinase) (cDNA clone:001-033-A08, full insert sequence) Q8H821 Q8H821_ORYSJ OJ1743A09.6 LOC_Os03g12150 Os03g0221700 OsJ_09958 OSNPB_030221700 ENOG411DY8P RBL Q0WVH0,A0A1I9LQW4 Q0WVH0_ARATH,A0A1I9LQW4_ARATH Noc2p family (Uncharacterized protein At3g55510),Noc2p family Embryo Lethality. Embryo development arrests at heart stage.,Extra whorls of petals. Extra whorls of sepals. Decreased stamen number.,Successive whorls of petals.,Short siliques. Indeterminate floral mersitem - carpels enclose extra floral organs.,Short siliques. Extra carpels.,Indeterminate floral meristem. No carpels. Instead stamens are continually produced following a spiral phyllotaxy. Embryo defective; Transition-C. Trehin-2008 68367,59654 Noc2p family (Uncharacterized protein At3g55510),Noc2p family nucleus [GO:0005634]; floral meristem determinacy [GO:0010582] locus:2100006; AT3G55510 nucleolar complex protein 2 Os12g0163200 protein (cDNA clone:J023054G20, full insert sequence) Q2QXB4 Q2QXB4_ORYSJ Os12g0163200 LOC_Os12g06610 Os12g0163200 OSNPB_120163200 ENOG411DY8S Q84JR3 PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial 56577 Pentatricopeptide repeat-containing protein At4g21705, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:504955535; AT4G21705 Pentatricopeptide repeat-containing protein Os07g0598500 protein (Putative DNA-binding protein) (cDNA clone:J033015N07, full insert sequence) Q6ZJE1 Q6ZJE1_ORYSJ Os07g0598500 OJ1579_C03.22 OSNPB_070598500 ENOG411EGJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Lipase class 3 family protein NA NA NA NA NA NA NA ENOG411E6C6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein (DUF2246) NA NA NA NA NA NA NA ENOG411E6CX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Small hydrophilic plant seed protein Os01g0159600 protein (cDNA clone:001-125-F04, full insert sequence) (cDNA clone:J033143J06, full insert sequence) Q5ZEL0 Q5ZEL0_ORYSJ Os01g0159600 Os01g0159600 OSNPB_010159600 P0041E11.22 ENOG411E6CP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os07g0123100 protein Q6Z4S0 Q6Z4S0_ORYSJ OSJNBa0057M23.132 Os07g0123100 OSNPB_070123100 ENOG411E6CS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os03g0387300 protein (Fragment) A0A0P0VY90 A0A0P0VY90_ORYSJ Os03g0387300 OSNPB_030387300 ENOG411E6CU F28P10.140 Q9SV37 Q9SV37_ARATH At3g54880 (Uncharacterized protein At3g54880) (Uncharacterized protein F28P10.140) (Zinc finger protein) 13032 At3g54880 (Uncharacterized protein At3g54880) (Uncharacterized protein F28P10.140) (Zinc finger protein) locus:2082707; AT3G54880 Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411E6CV SAUR78 Q9C9E1 Q9C9E1_ARATH At1g72430 (SAUR-like auxin-responsive protein family) (Uncharacterized protein T10D10.10) FUNCTION: May be involved in the regulation of ethylene receptor signaling. Promotes cell expansion and plant growth. {ECO:0000269|PubMed:26207341}. MISCELLANEOUS: Plants silencing SAUR78 exhibit increased sensitivity to ethylene, while plants over-expressing SAUR78 display reduced ethylene sensitivity. Plants over-expressing SAUR78 exhibit increased rosette diameters. {ECO:0000269|PubMed:26207341}. 13591 At1g72430 (SAUR-like auxin-responsive protein family) (Uncharacterized protein T10D10.10) response to auxin [GO:0009733] locus:2193927; AT1G72430 SAUR family protein source NA NA NA NA NA NA NA ENOG411EC3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411EE6J Q9ASQ9 Q9ASQ9_ARATH At1g34200/F23M19.12 (F23M19.12/F23M19.12) (Glyceraldehyde-3-phosphate dehydrogenase-like family protein) 38588 At1g34200/F23M19.12 (F23M19.12/F23M19.12) (Glyceraldehyde-3-phosphate dehydrogenase-like family protein) oxidoreductase activity [GO:0016491] locus:2009086; AT1G34200 Oxidoreductase family NAD-binding Rossmann fold NA NA NA NA NA NA NA ENOG411EE6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Myotubularin related protein NA NA NA NA NA NA NA ENOG411EE6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4-coumarate--CoA ligase-like NA NA NA NA NA NA NA ENOG411EE6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411E90G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E90U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E90X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E904 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0464200 protein Q6I5K3 Q6I5K3_ORYSJ Os05g0464200 OJ1280_A04.13 OSJNBa0009E21.1 OSNPB_050464200 ENOG411EJJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor-A C terminal domain NA NA NA NA NA NA NA ENOG411EJJV Q9LM61 Q9LM61_ARATH F2E2.5 19459 F2E2.5 locus:2030561; AT1G22010 Zinc finger C3HC4 type (RING finger) Os11g0142650 protein,Os11g0142600 protein A0A0P0XYP6,A0A0P0XZ11 A0A0P0XYP6_ORYSJ,A0A0P0XZ11_ORYSJ Os11g0142650 OSNPB_110142650,Os11g0142600 OSNPB_110142600 ENOG411EJJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJG Q1G3P8 Q1G3P8_ARATH Ta11-like non-LTR retrotransposon 24751 Ta11-like non-LTR retrotransposon locus:1009023186; AT2G16676 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJJF IDA Q8LAD7 IDA_ARATH Protein IDA (Protein INFLORESCENCE DEFICIENT IN ABSCISSION) DISRUPTION PHENOTYPE: Floral organs remain attached to the plant body after the shedding of mature seeds despite a normal floral abscission zone development. {ECO:0000269|PubMed:12972671}. Ethylene-sensitive mutant floral organs remain attached to the plant body after the shedding of mature seeds even though a floral abscission zone develops. No other developmental processes were affected. When grown on the medium containing ethylene (10 ppm) mutant seedlings response was limited to lack of abscission in senescenced floral organs. Except with regard to floral abscission seedling response to ethylene was the same as in wild type. Indehiscent floral organs; Sensitive to ethylene-R. Aalen-2003 FUNCTION: Involved in an ethylene-independent separation step of floral abscission. May act with RLK5 and HSL2 as ligand-receptor pairs. {ECO:0000269|PubMed:18660431}. MISCELLANEOUS: IDL1 is capable of replacing the activity of IDA while IDL2, IDL3, IDL4 and IDL5 are only partially redundant.; MISCELLANEOUS: IDA is processed in vitro by the same proteolytic activity releasing the CLE peptide from CLV3. 8433 Protein IDA (Protein INFLORESCENCE DEFICIENT IN ABSCISSION) apoplast [GO:0048046]; extracellular region [GO:0005576]; extracellular space [GO:0005615]; receptor binding [GO:0005102]; floral organ abscission [GO:0010227]; lateral root morphogenesis [GO:0010102]; pectin catabolic process [GO:0045490]; regulation of gene expression [GO:0010468]; response to ethylene [GO:0009723] DEVELOPMENTAL STAGE: Expressed only during floral abscission. {ECO:0000269|PubMed:12972671}. TISSUE SPECIFICITY: Expressed specifically in the floral abscission zone. {ECO:0000269|PubMed:12972671}. locus:505006209; AT1G68765 inflorescence deficient in abscission NA NA NA NA NA NA NA ENOG411EJJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EJJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0244400 protein (Fragment) Q0J701 Q0J701_ORYSJ Os08g0244400 Os08g0244400 OSNPB_080244400 ENOG411EJJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0162900 protein) (cDNA clone:002-126-A03, full insert sequence),Expressed protein (Os11g0159500 protein) (cDNA clone:002-103-E08, full insert sequence) Q53PN9,Q2RAA1 Q53PN9_ORYSJ,Q2RAA1_ORYSJ Os11g0162900 LOC_Os11g06370 Os11g0162900 OsJ_33088 OSNPB_110162900,Os11g0159500 LOC_Os11g06070 Os11g0159500 OsJ_33050 OSNPB_110159500 ENOG411EJJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5IA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os08g0433500 protein A0A0P0XG12 A0A0P0XG12_ORYSJ Os08g0433500 OSNPB_080433500 ENOG411E5IH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411EMD9 Q5Q0D6,Q5Q0D4 Q5Q0D6_ARATH,Q5Q0D4_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein R-ATH-8876725; 26492,34375 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2197234; AT1G73320 Putative methyltransferase NA NA NA NA NA NA NA ENOG411EMD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EMD1 HCF136 O82660,A0A1P8BG37 P2SAF_ARATH,A0A1P8BG37_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic,Photosystem II stability/assembly factor, chloroplast (HCF136) Seedling lethal; Pale green cotyledons-P. Westhoff-1998 FUNCTION: Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559. Has been suggested (PubMed:11826309) to be required for chlorophyll a binding. {ECO:0000269|PubMed:11826309, ECO:0000269|PubMed:12459468, ECO:0000269|PubMed:9736608}. 44104,46914 Photosystem II stability/assembly factor HCF136, chloroplastic,Photosystem II stability/assembly factor, chloroplast (HCF136) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; photosystem II [GO:0009523]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; photosynthesis [GO:0015979]; plastid organization [GO:0009657]; protein complex assembly [GO:0006461]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735] DEVELOPMENTAL STAGE: Accumulates also in dark-grown seedlings. TISSUE SPECIFICITY: Expression in green tissue, not roots. locus:2178262; AT5G23120 Photosystem II stability assembly factor HCF136 Photosystem II stability/assembly factor HCF136, chloroplastic,Os06g0729650 protein,Os06g0729500 protein Q5Z5A8,A0A0P0X1D1,A0A0P0X1G5 P2SAF_ORYSJ,A0A0P0X1D1_ORYSJ,A0A0P0X1G5_ORYSJ HCF136 Os06g0729500 LOC_Os06g51330 OSJNBa0069C14.15,Os06g0729650 OSNPB_060729650,Os06g0729500 OSNPB_060729500 FUNCTION: Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559. {ECO:0000250}. ENOG411DXG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os08g0148100 protein,Os04g0631100 protein (Fragment) A0A0P0XBU6,A0A0P0WFB6 A0A0P0XBU6_ORYSJ,A0A0P0WFB6_ORYSJ Os08g0148100 OSNPB_080148100,Os04g0631100 OSNPB_040631100 ENOG411DXG4 Q9SMU4,A0A1I9LNT4 U496N_ARATH,A0A1I9LNT4_ARATH UPF0496 protein At3g49070,Transmembrane protein, putative (DUF677) 47273,42303 UPF0496 protein At3g49070,Transmembrane protein, putative (DUF677) integral component of membrane [GO:0016021] locus:2101363; AT3G49070 UPF0496 protein UPF0496 protein 3 Q10RR9 U496C_ORYSJ Os03g0148000 LOC_Os03g05440 OsJ_009069 OSJNBa0067N01.1 OSJNBb0050N02.3 ENOG411DXG7 MDC12.26 Q9FMJ4 Q9FMJ4_ARATH At5g63290 (Oxygen-independent coproporphyrinogen-like protein) (Radical SAM superfamily protein) ARA:AT5G63290-MONOMER; 54046 At5g63290 (Oxygen-independent coproporphyrinogen-like protein) (Radical SAM superfamily protein) cytoplasm [GO:0005737]; coproporphyrinogen oxidase activity [GO:0004109]; iron-sulfur cluster binding [GO:0051536]; porphyrin-containing compound biosynthetic process [GO:0006779] locus:2161897; AT5G63290 Oxygen-independent coproporphyrinogen-III oxidase-like protein Os12g0270100 protein (Oxygen-independent coproporphyrinogen III oxidase family protein, expressed) (cDNA clone:J013155L16, full insert sequence),Os12g0270100 protein (Fragment) Q2QU90,A0A0P0Y965 Q2QU90_ORYSJ,A0A0P0Y965_ORYSJ Os12g0270100 LOC_Os12g17070 Os12g0270100 OSNPB_120270100,Os12g0270100 OSNPB_120270100 ENOG411DXG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os05g0356700 protein Q5W6Y3 Q5W6Y3_ORYSJ Os05g0356700 OSJNBa0036C12.14 OSNPB_050356700 ENOG411DXG1 UBA2B,UBA2A O80678,Q9LES2 UBA2B_ARATH,UBA2A_ARATH UBP1-associated protein 2B,UBP1-associated protein 2A (UBP1-interacting protein 2a) FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity). {ECO:0000250}.,FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus. However, unlike UBP1, UBA2A does not stimulate pre-mRNA splicing. {ECO:0000269|PubMed:12024044}. MISCELLANEOUS: Plants over-expressing UB2A1 display severe growth defects consisting of premature cell death and chlorosis. {ECO:0000305|PubMed:18705666}. 49026,51439 UBP1-associated protein 2B,UBP1-associated protein 2A (UBP1-interacting protein 2a) nucleus [GO:0005634]; RNA binding [GO:0003723]; cell death [GO:0008219]; defense response [GO:0006952]; ethylene biosynthetic process [GO:0009693]; leaf senescence [GO:0010150],cytosol [GO:0005829]; nucleus [GO:0005634]; AU-rich element binding [GO:0017091]; mRNA binding [GO:0003729]; abscisic acid-activated signaling pathway [GO:0009738]; cell death [GO:0008219]; defense response [GO:0006952]; ethylene biosynthetic process [GO:0009693]; leaf senescence [GO:0010150]; mRNA stabilization [GO:0048255] TISSUE SPECIFICITY: Expressed in shoot meristem and flowers. {ECO:0000269|PubMed:18278441}.,TISSUE SPECIFICITY: Expressed in young leaves, flowers and embryos. {ECO:0000269|PubMed:18278441}. locus:2063177;,locus:2103670; AT2G41060,AT3G56860 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os01g0265800 protein (Putative UBP1 interacting protein 1a) (cDNA clone:001-203-A05, full insert sequence) (cDNA clone:J013113M11, full insert sequence) Q9LJ04 Q9LJ04_ORYSJ Os01g0265800 OsJ_01215 OSNPB_010265800 P0499C11.21 ENOG411DXG0 HESO1 Q5XET5 HESO1_ARATH Protein HESO1 (EC 2.7.7.52) (HEN1 suppressor 1) (RNA uridylyltransferase) DISRUPTION PHENOTYPE: No effect on miRNA accumulation in the wild-type background, but increased abundance of the heterogeneous miRNA species in a hen1 background. Reduced 3' uridylation of miRNAs without affecting the 3' truncation. {ECO:0000269|PubMed:22464194}. FUNCTION: Uridylates small RNAs to trigger their degradation (PubMed:25928341, PubMed:22464191, PubMed:22464194). Catalyzes the uridylation of 5' fragments produced by AGO1-mediated cleavage of miRNA target RNAs (PubMed:24733911). Acts synergistically with URT1 in unmethylated miRNA uridylation, leading to their degradation (PubMed:25928341). URT1 and HESO1 prefer substrates with different 3' end nucleotides and act cooperatively to tail different forms of the same miRNAs (PubMed:25928405). URT1 and HESO1 act sequentially, with URT1 mono-uridylating the miRNAs followed by their further uridylation by HESO1 (PubMed:25928405). Able to act on AGO1-bound miRNAs and the uridylated species stay associated with AGO1 (PubMed:25928405, PubMed:24733911). {ECO:0000269|PubMed:22464191, ECO:0000269|PubMed:22464194, ECO:0000269|PubMed:24733911, ECO:0000269|PubMed:25928341, ECO:0000269|PubMed:25928405}. 2.7.7.52 57592 Protein HESO1 (EC 2.7.7.52) (HEN1 suppressor 1) (RNA uridylyltransferase) cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]; nucleotidyltransferase activity [GO:0016779]; RNA uridylyltransferase activity [GO:0050265]; regulation of gene silencing by miRNA [GO:0060964]; RNA 3' uridylation [GO:0071076] locus:2063937; AT2G39740 Inherit from KOG: Zinc finger CCHC domain containing Os01g0846500 protein (cDNA clone:J033047E14, full insert sequence),Os01g0846500 protein,Os01g0846450 protein B7EMF8,Q5N789,A0A0P0VAD6 B7EMF8_ORYSJ,Q5N789_ORYSJ,A0A0P0VAD6_ORYSJ Os01g0846500 OSNPB_010846500,P0005H10.2-1 P0446B05.30-1 Os01g0846500 OsJ_04062 OSNPB_010846500,Os01g0846450 OSNPB_010846450 ENOG411DXG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (F-box domain containing protein, expressed) (Os03g0727800 protein) (cDNA clone:001-118-E11, full insert sequence) Q6ATI4 Q6ATI4_ORYSJ Os03g0727800 LOC_Os03g51760 Os03g0727800 OsJ_12433 OSNPB_030727800 ENOG411DXG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain Glutathione S-transferase GSTU6, putative, expressed (Os10g0529400 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU9) Q945W9 Q945W9_ORYSJ Os10g0529400 LOC_Os10g38590 OsJ_32235 OSJNBa0034L04.10 OSJNBb0038A07.7 OSNPB_100529400 ENOG411DXG9 Q9LT16,A0A1I9LLD2 Q9LT16_ARATH,A0A1I9LLD2_ARATH BTB/POZ domain protein 45265,50159 BTB/POZ domain protein locus:2092281; AT3G19920 NA NA NA NA NA NA NA NA ENOG411DXG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carboxylesterase 15-like Os07g0162500 protein (Putative cell death associated protein) (cDNA clone:001-206-A09, full insert sequence) (cDNA clone:001-207-G10, full insert sequence) (cDNA clone:006-310-E02, full insert sequence) Q8GSE8 Q8GSE8_ORYSJ OJ1714_H10.152 P0428D12.105 Os07g0162500 OSNPB_070162500 ENOG411DXGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os07g0533600 protein (Putative nucleoid DNA-binding protein cnd41) (cDNA clone:002-147-E01, full insert sequence),Os01g0967050 protein Q8H5I3,A0A0P0VDA0 Q8H5I3_ORYSJ,A0A0P0VDA0_ORYSJ OJ1131_E05.101 Os07g0533600 OSJNBa0039D04.22 OSNPB_070533600,Os01g0967050 OSNPB_010967050 ENOG411DXGT Q9XI22,Q9LW17,Q9SSS7,A0A1P8ANL5,A0A1P8AVH1 Q9XI22_ARATH,Q9LW17_ARATH,Q9SSS7_ARATH,A0A1P8ANL5_ARATH,A0A1P8AVH1_ARATH F9L1.42 protein (Similar to unr-interacting protein and contains WD40 domains) (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g15470),Expressed protein (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g15610) (WD-40 repeat protein-like),AT1G52730 protein (At1g52730) (F6D8.2 protein) (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g52730),Transducin/WD40 repeat-like superfamily protein 36345,37356,37754,31175,29197 F9L1.42 protein (Similar to unr-interacting protein and contains WD40 domains) (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g15470),Expressed protein (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g15610) (WD-40 repeat protein-like),AT1G52730 protein (At1g52730) (F6D8.2 protein) (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g52730),Transducin/WD40 repeat-like superfamily protein cytosol [GO:0005829] locus:2037818;,locus:2093182;,locus:2035179; AT1G15470,AT3G15610,AT1G52730 serine-threonine kinase receptor-associated Os06g0598900 protein,Os02g0205400 protein (Putative serine-threonine kinase receptor-associated protein) Q0DB62,Q6Z6C8 Q0DB62_ORYSJ,Q6Z6C8_ORYSJ Os06g0598900 Os06g0598900 OSNPB_060598900,Os02g0205400 OsJ_05825 OSJNBb0056C19.23 OSNPB_020205400 P0544H11.39 ENOG411DXGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Avr9 Cf-9 rapidly elicited protein 146 Os06g0554600 protein A0A0P0WXW3 A0A0P0WXW3_ORYSJ Os06g0554600 OSNPB_060554600 ENOG411DXGV F24B22.270 Q58FY7,Q9M375 Q58FY7_ARATH,Q9M375_ARATH Uncharacterized protein,DNA-directed RNA polymerase subunit alpha (Uncharacterized protein F24B22.270) 44910,40627 Uncharacterized protein,DNA-directed RNA polymerase subunit alpha (Uncharacterized protein F24B22.270) DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2057170;,locus:2080350; AT2G38430,AT3G54310 NA Os02g0504100 protein (cDNA clone:J023001O14, full insert sequence) B7EFP2 B7EFP2_ORYSJ Os02g0504100 OSNPB_020504100 ENOG411DXGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR Os03g0149400 protein Q0DV51 Q0DV51_ORYSJ Os03g0149400 OSNPB_030149400 ENOG411DXGS F3H Q9S818,F4J3A5 FL3H_ARATH,F4J3A5_ARATH Naringenin,2-oxoglutarate 3-dioxygenase (Naringenin 3-dioxygenase) (EC 1.14.11.9) (F3H) (Flavanone 3-hydroxylase) (Protein TRANSPARENT TESTA 6),Flavanone 3-hydroxylase Yellow seed coat-B. Weisshaar-1998 FUNCTION: Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R-dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT3G51240-MONOMER;MetaCyc:AT3G51240-MONOMER; 1.14.11.9 40276,31086 Naringenin,2-oxoglutarate 3-dioxygenase (Naringenin 3-dioxygenase) (EC 1.14.11.9) (F3H) (Flavanone 3-hydroxylase) (Protein TRANSPARENT TESTA 6),Flavanone 3-hydroxylase ATP binding [GO:0005524]; L-ascorbic acid binding [GO:0031418]; metal ion binding [GO:0046872]; naringenin 3-dioxygenase activity [GO:0045486]; flavonoid biosynthetic process [GO:0009813]; response to UV-B [GO:0010224],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2081008; AT3G51240 flavanone 3-hydroxylase NA NA NA NA NA NA NA ENOG411DXGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Lipase class 3 family protein NA NA NA NA NA NA NA ENOG411DXGY BGAL3 Q9SCV9 BGAL3_ARATH Beta-galactosidase 3 (Lactase 3) (EC 3.2.1.23) ARA:AT4G36360-MONOMER; 3.2.1.23 95193 Beta-galactosidase 3 (Lactase 3) (EC 3.2.1.23) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17466346}. locus:2115310; AT4G36360 beta-galactosidase Beta-galactosidase 5 (Lactase 5) (EC 3.2.1.23),Os03g0165400 protein (Fragment) Q10RB4,A0A0P0VTJ4 BGAL5_ORYSJ,A0A0P0VTJ4_ORYSJ Os03g0165400 LOC_Os03g06940 OJ1123F12.1,Os03g0165400 OSNPB_030165400 ENOG411DXGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: replication factor c AT hook motif family protein, expressed (Os03g0262300 protein) (cDNA, clone: J100061K16, full insert sequence) Q10NR0 Q10NR0_ORYSJ Os03g0262300 LOC_Os03g15580 OSNPB_030262300 ENOG411DXGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein phosphatase 2C 6-like NA NA NA NA NA NA NA ENOG411DXGE SCL23,SCR Q9FHZ1,Q9M384 SCL23_ARATH,SCR_ARATH Scarecrow-like protein 23 (AtSCL23) (GRAS family protein 28) (AtGRAS-28),Protein SCARECROW (AtSCR) (GRAS family protein 20) (AtGRAS-20) (Protein SHOOT GRAVITROPISM 1) DISRUPTION PHENOTYPE: Plants have a greatly reduced root length and only a single cell layer between the epidermis and the pericycle. The sgrl-1 mutant has no gravitropic response either in inflorescence stems or in hypocotyls. {ECO:0000269|PubMed:10631180, ECO:0000269|PubMed:8756724, ECO:0000269|PubMed:8819871, ECO:0000269|PubMed:9670559}. A significant but much smaller reduction of the number of cell files was observed compared to the shr-2 mutant but no differences were found in the number of stele initials or in the width of the stele 100 μm above the QC. Slow root growth-P. Benfey-1996 FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}.,FUNCTION: Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Also required for normal shoot gravitropism. Regulates the radial organization of the shoot axial organs. Binds to the promoter of MGP, NUC, RLK and SCL3. Restricts SHR movment and sequesters it into the nucleus of the endodermis. {ECO:0000269|PubMed:10631180, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15142972, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:22921914, ECO:0000269|PubMed:24302889, ECO:0000269|PubMed:8819871, ECO:0000269|PubMed:9375406, ECO:0000269|PubMed:9670559}. 44893,71506 Scarecrow-like protein 23 (AtSCL23) (GRAS family protein 28) (AtGRAS-28),Protein SCARECROW (AtSCR) (GRAS family protein 20) (AtGRAS-20) (Protein SHOOT GRAVITROPISM 1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; bundle sheath cell fate specification [GO:0090610]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; asymmetric cell division [GO:0008356]; bundle sheath cell fate specification [GO:0090610]; gravitropism [GO:0009630]; leaf development [GO:0048366]; maintenance of protein location in nucleus [GO:0051457]; radial pattern formation [GO:0009956]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected in the ground tissue of late heart-stage embryos. After germination, expressed also in the L1 layer throughout the shoot apical meristem including the peripheral zone. Detected in most tissues of young leaf primordia, except in the presumptive vasculature. In mature leaves, expressed in bundle sheath cells. Detected in inflorescence stems in a single internal cell layer corresponding to the starch sheath. {ECO:0000269|PubMed:10631180, ECO:0000269|PubMed:8756724}. TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.,TISSUE SPECIFICITY: Expressed in siliques, leaves and roots. Detected in the initial daughter cell before its asymmetric division and remains expressed only in the endodermal cell layer after the division. Expressed in the endodermis or starch sheath of the seedling hypocotyl, in the leaf bundle sheath cells and the root quiescent center. {ECO:0000269|PubMed:10631180, ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:11565032, ECO:0000269|PubMed:8756724, ECO:0000269|PubMed:9375406}. locus:2165685;,locus:2080345; AT5G41920,AT3G54220 Transcription factor Protein SCARECROW 1 (OsSCR1),Protein SCARECROW 2 (OsSCR2),Os07g0567700 protein,Os07g0567700 protein (Fragment) Q2RB59,Q2QYF3,A0A0P0X7S9,A0A0P0X7P2,A0A0P0X7N9 SCR1_ORYSJ,SCR2_ORYSJ,A0A0P0X7S9_ORYSJ,A0A0P0X7P2_ORYSJ,A0A0P0X7N9_ORYSJ SCR1 Os11g0124300 LOC_Os11g03110 OsJ_031458,SCR2 Os12g0122000 LOC_Os12g02870 OsJ_033689,Os07g0567700 OSNPB_070567700 FUNCTION: Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.,FUNCTION: Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}. ENOG411DXGD F4JAA1,A0A1I9LN82 F4JAA1_ARATH,A0A1I9LN82_ARATH Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein 120295,127155 Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672] AT3G46920 PB1 Os06g0181200 protein,Os06g0181100 protein (Fragment) Q0DE32,Q0DE33 Q0DE32_ORYSJ,Q0DE33_ORYSJ Os06g0181200 Os06g0181200 OsJ_20347 OSNPB_060181200,Os06g0181100 Os06g0181100 OSNPB_060181100 ENOG411DXGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED Os08g0198100 protein,Os08g0198750 protein,Os08g0198400 protein,Os08g0198000 protein A3BQI0,A0A0P0XD22,A0A0P0XDB5,A0A0P0XCU2 A3BQI0_ORYSJ,A0A0P0XD22_ORYSJ,A0A0P0XDB5_ORYSJ,A0A0P0XCU2_ORYSJ Os08g0198100 OsJ_26358 OSNPB_080198100,Os08g0198750 OSNPB_080198750,Os08g0198400 OSNPB_080198400,Os08g0198000 OSNPB_080198000 ENOG411DXGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB POZ domain-containing protein At5g03250-like NA NA NA NA NA NA NA ENOG411DXGA PCMP-H89 Q9LYV3 PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial 91439 Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2183931; AT5G13230 Pentatricopeptide repeat-containing protein Os03g0441400 protein,Os03g0441400 protein (Pentatricopeptide, putative, expressed) (cDNA clone:001-130-C06, full insert sequence) B9F983,Q10IY6 B9F983_ORYSJ,Q10IY6_ORYSJ Os03g0441400 OsJ_11408 OSNPB_030441400,Os03g0441400 LOC_Os03g32620 Os03g0441400 OSNPB_030441400 ENOG411DXGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411DXGB TBP1,TBP2 P28147,P28148,A0A1P8APV5,F4JDC0 TBP1_ARATH,TBP2_ARATH,A0A1P8APV5_ARATH,F4JDC0_ARATH TATA-box-binding protein 1 (AtTBP1) (TATA sequence-binding protein 1) (TBP-1) (TATA-binding factor 1) (TATA-box factor 1) (Transcription initiation factor TFIID TBP-1 subunit),TATA-box-binding protein 2 (TATA sequence-binding protein 2) (TBP-2) (TATA-binding factor 2) (TATA-box factor 2) (Transcription initiation factor TFIID TBP-2 subunit),TATA binding protein 2,TATA binding protein 1 FUNCTION: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. {ECO:0000269|PubMed:2197561}.,FUNCTION: General transcription factor (GTF) that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). Interacts with TFIIB1 and is required for activated transcription and possibly basal transcription (PubMed:10634912). May act as GTF of RNA polymerase I-dependent transcription and rRNA synthesis. Forms a ternary complex with PBRP1 and the rDNA promoter region (PubMed:18668124). {ECO:0000250|UniProtKB:P20226, ECO:0000269|PubMed:10634912, ECO:0000269|PubMed:18668124}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 22368,22396,20363,21525 TATA-box-binding protein 1 (AtTBP1) (TATA sequence-binding protein 1) (TBP-1) (TATA-binding factor 1) (TATA-box factor 1) (Transcription initiation factor TFIID TBP-1 subunit),TATA-box-binding protein 2 (TATA sequence-binding protein 2) (TBP-2) (TATA-binding factor 2) (TATA-box factor 2) (Transcription initiation factor TFIID TBP-2 subunit),TATA binding protein 2,TATA binding protein 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-templated transcription, initiation [GO:0006352]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; DNA binding [GO:0003677]; TBP-class protein binding [GO:0017025]; DNA-templated transcription, initiation [GO:0006352]; regulation of transcription, DNA-templated [GO:0006355],integral component of membrane [GO:0016021]; DNA binding [GO:0003677]; DNA-templated transcription, initiation [GO:0006352] locus:2092905;,locus:2193904; AT3G13445,AT1G55520 General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre- initiation complex (PIC) playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II TATA-binding protein 2 (TATA sequence-binding protein 2) (TBP-2) (TATA-binding factor 2) (TATA-box factor 2) (Transcription initiation factor TFIID TBP-2 subunit),Os12g0580300 protein (TATA-binding protein 2, putative, expressed) (cDNA clone:J033112A19, full insert sequence) Q8W0W4,Q2QN41 TBP2_ORYSJ,Q2QN41_ORYSJ TBP2 TFIID Os03g0657000 LOC_Os03g45410 OSJNBa0075A22.20,Os12g0580300 LOC_Os12g39070 Os12g0580300 OSNPB_120580300 FUNCTION: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). {ECO:0000250, ECO:0000269|PubMed:11971135}. ENOG411DXGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411DXGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein NB-ARC domain containing protein, expressed (Os03g0689400 protein),Os03g0689866 protein,Os03g0689833 protein Q10EZ0,A0A0P0W1M4,A0A0P0W1M5 Q10EZ0_ORYSJ,A0A0P0W1M4_ORYSJ,A0A0P0W1M5_ORYSJ Os03g0689400 LOC_Os03g48320 OSNPB_030689400,Os03g0689866 OSNPB_030689866,Os03g0689833 OSNPB_030689833 ENOG411DXGI CGR3 Q9M2Y6,Q0WPN7 Y3972_ARATH,Q0WPN7_ARATH Uncharacterized protein At3g49720,At5g65810 (Transmembrane protein) (Uncharacterized protein At5g65810) FUNCTION: Together with CGR3, required for homogalacturonan pectins (HG) methylesterification in the Golgi apparatus prior to integration into cell walls, essential for general growth and development (PubMed:25704846, PubMed:27208234). Promotes rosette growth (PubMed:25704846). Impacts carbon (C) partitioning, photosynthesis and respiration efficiency by influencing leaf mesophyll cell walls morphology and physiology; pectin methylesterification modulates both expansion and positioning of cells in leaves, probably by changing cell walls plasticity (PubMed:27208234). {ECO:0000269|PubMed:25704846, ECO:0000269|PubMed:27208234}.,FUNCTION: Together with CGR2, required for homogalacturonan pectins (HG) methylesterification in the Golgi apparatus prior to integration into cell walls, essential for general growth and development (PubMed:21422118, PubMed:25704846, PubMed:27208234). Promotes petiole elongation (PubMed:21422118). Impacts photosynthesis and respiration efficiency by influencing leaf mesophyll morphology and physiology; pectin methylesterification modulates both expansion and positioning of cells in leaves, probably by changing cell walls plasticity (PubMed:27208234). {ECO:0000269|PubMed:21422118, ECO:0000269|PubMed:25704846, ECO:0000269|PubMed:27208234}. 28532,28296 Uncharacterized protein At3g49720,At5g65810 (Transmembrane protein) (Uncharacterized protein At5g65810) chloroplast thylakoid membrane [GO:0009535]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; growth [GO:0040007]; pectin biosynthetic process [GO:0045489],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; growth [GO:0040007]; homogalacturonan metabolic process [GO:0010394]; pectin biosynthetic process [GO:0045489]; pectin metabolic process [GO:0045488] locus:2097380;,locus:2156208; AT3G49720,AT5G65810 NA Os01g0144000 protein (Fragment) A0A0P0UXW7 A0A0P0UXW7_ORYSJ Os01g0144000 OSNPB_010144000 ENOG411DXGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Brassinosteroid LRR receptor kinase BRL3 (EC 2.7.11.1) (BRI1-like receptor kinase 3) Q6ZCZ2 BRL3_ORYSJ BRL3 Os08g0342300 LOC_Os08g25380 OJ1790_D02.27 OsJ_26971 FUNCTION: May be involved in brassenosteroid (BR) perception in roots. {ECO:0000269|PubMed:16407447}. ENOG411DXGK A0A1P8ASK3,F4I9I6 A0A1P8ASK3_ARATH,F4I9I6_ARATH Myosin-like protein 44039,56212 Myosin-like protein locus:1005716743; AT1G51405 Inherit from KOG: reductase Expressed protein (Os03g0216900 protein) (cDNA clone:J033050E12, full insert sequence) Q10PY3 Q10PY3_ORYSJ LOC_Os03g11770 Os03g0216900 OSNPB_030216900 ENOG411DXGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - DUF26 kinases have homology to DUF26 containing loci expressed Os07g0539700 protein,Os07g0537900 protein (Serine/threonine kinase receptor-like protein),Os07g0537900 protein (Serine/threonine kinase receptor-like protein) (cDNA clone:J033118P18, full insert sequence),Os07g0538700 protein,Os07g0538300 protein B9FXQ0,Q7F1L4,Q7F1L5,A0A0P0X758,A0A0P0X776 B9FXQ0_ORYSJ,Q7F1L4_ORYSJ,Q7F1L5_ORYSJ,A0A0P0X758_ORYSJ,A0A0P0X776_ORYSJ Os07g0539700 OsJ_24594 OSNPB_070539700,OJ1058_A12.141-2 Os07g0537900 P0696F12.3-2 OSNPB_070537900,OJ1058_A12.141-1 P0696F12.3-1 Os07g0537900 OsJ_24582 OSNPB_070537900,Os07g0538700 OSNPB_070538700,Os07g0538300 OSNPB_070538300 ENOG411DZ3M BIG5 F4IXW2 BIG5_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 5 (BIG5) (ARF guanine-nucleotide exchange factor BIG5) (Protein BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE 1) (Protein BEN1) (Protein HOPM INTERACTOR 7) DISRUPTION PHENOTYPE: Increased susceptibility to Pseudomonas syringae infection. Displays growth and polarity defects. {ECO:0000269|PubMed:16840699, ECO:0000269|PubMed:19230664}. AtMIN7 KO plants infected by the CEL-deletion mutant of Pseudomonas syringae DC3000 showed increased bacterial multiplication and enhanced chlorotic and necrotic disease symptoms compared with Col-0 plants. AtMIN7 KO plants remained resistant to the nonpathogenic hrc mutant bacteria and responded to Pst DC3000 similarly to wild-type Col-0 plants. Sensitive to avirulent bacteria-S. He-2006 FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Acts as the major regulator of early endosomal vesicle trafficking but is also involved in the endocytosis process. Target of hopM1, a conserved Pseudomonas syringae virulence protein that directs the protein to its own proteasome-mediated degradation. Plays a broad role in PAMP-triggered immunity (PTI), effector-triggered immunity (ETI), and salicylic acid (SA)-regulated immunity. {ECO:0000269|PubMed:19230664, ECO:0000269|PubMed:21670267}. 192883 Brefeldin A-inhibited guanine nucleotide-exchange protein 5 (BIG5) (ARF guanine-nucleotide exchange factor BIG5) (Protein BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE 1) (Protein BEN1) (Protein HOPM INTERACTOR 7) cytosol [GO:0005829]; early endosome [GO:0005769]; early endosome membrane [GO:0031901]; trans-Golgi network [GO:0005802]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; defense response to bacterium [GO:0042742]; endocytosis [GO:0006897]; growth [GO:0040007]; immune response [GO:0006955]; innate immune response [GO:0045087]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012]; vesicle-mediated transport [GO:0016192]; viral process [GO:0016032] locus:2084706; AT3G43300 Brefeldin A-inhibited guanine nucleotide-exchange protein Os07g0564750 protein (Fragment),Os07g0564700 protein (Fragment) A0A0P0X7S0,A0A0P0X7K0 A0A0P0X7S0_ORYSJ,A0A0P0X7K0_ORYSJ Os07g0564750 OSNPB_070564750,Os07g0564700 OSNPB_070564700 ENOG411DZ3K ATL78 Q6NQG7 ATL78_ARATH RING-H2 finger protein ATL78 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL78) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 24286 RING-H2 finger protein ATL78 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL78) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2028436; AT1G49230 RING-H2 finger protein Os04g0419550 protein (Fragment) A0A0P0WAF2 A0A0P0WAF2_ORYSJ Os04g0419550 OSNPB_040419550 ENOG411DZ3J Q9LVS3 PP422_ARATH Pentatricopeptide repeat-containing protein At5g47360 53784 Pentatricopeptide repeat-containing protein At5g47360 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2171474; AT5G47360 Pentatricopeptide repeat-containing protein Os03g0225300 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J013102E15, full insert sequence) Q8H7S0 Q8H7S0_ORYSJ OSJNBa0081P02.11 LOC_Os03g12430 Os03g0225300 OsJ_09985 OSNPB_030225300 ENOG411DZ3I RBL13 Q9M1B5 RBL13_ARATH RHOMBOID-like protein 13 (AtRBL13) (EC 3.4.21.-) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:22007993}. 3.4.21.- 29641 RHOMBOID-like protein 13 (AtRBL13) (EC 3.4.21.-) integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2097473; AT3G59520 Rhomboid protein Os01g0895500 protein (cDNA clone:001-119-A10, full insert sequence) Q5JLU6 Q5JLU6_ORYSJ Os01g0895500 Os01g0895500 B1078G07.58 OSNPB_010895500 ENOG411DZ3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger Os02g0608100 protein (Putative far-red impaired response protein),Os02g0608100 protein (Fragment) Q6K1Y4,A0A0P0VLI9 Q6K1Y4_ORYSJ,A0A0P0VLI9_ORYSJ Os02g0608100 Os02g0608100 OSJNBa0030C08.28 OSNPB_020608100 P0496E03.1,Os02g0608100 OSNPB_020608100 ENOG411DZ3G Q9LZS8,Q9SF94,Q9LZS7,Q9LZS9,A0A1P8BE59,A0A1R7T3A7,A0A1R7T3A6 GDL70_ARATH,GDL50_ARATH,GDL71_ARATH,GDL69_ARATH,A0A1P8BE59_ARATH,A0A1R7T3A7_ARATH,A0A1R7T3A6_ARATH GDSL esterase/lipase At5g03600 (EC 3.1.1.-),GDSL esterase/lipase At3g09930 (EC 3.1.1.-) (Extracellular lipase At3g09930),GDSL esterase/lipase At5g03610 (EC 3.1.1.-) (Extracellular lipase At5g03610),GDSL esterase/lipase At5g03590 (EC 3.1.1.-) (Extracellular lipase At5g03590),SGNH hydrolase-type esterase superfamily protein,GDSL-like Lipase/Acylhydrolase superfamily protein ARA:GQT-2752-MONOMER; 3.1.1.- 35723,39829,40106,38427,39623,21808,29477 GDSL esterase/lipase At5g03600 (EC 3.1.1.-),GDSL esterase/lipase At3g09930 (EC 3.1.1.-) (Extracellular lipase At3g09930),GDSL esterase/lipase At5g03610 (EC 3.1.1.-) (Extracellular lipase At5g03610),GDSL esterase/lipase At5g03590 (EC 3.1.1.-) (Extracellular lipase At5g03590),SGNH hydrolase-type esterase superfamily protein,GDSL-like Lipase/Acylhydrolase superfamily protein hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2144548;,locus:2085054;,locus:2144558; AT5G03600,AT3G09930,AT5G03610,AT5G03590 GDSL esterase lipase Os09g0567800 protein A0A0P0XQH4 A0A0P0XQH4_ORYSJ Os09g0567800 OSNPB_090567800 ENOG411DZ3F DBP,T2J13.220,MRO11.21 O80837,Q9M2D8,Q9SMT2,Q9FFA5,A0A1P8BFC2,F4KEA0 REMO_ARATH,Y3126_ARATH,Q9SMT2_ARATH,Q9FFA5_ARATH,A0A1P8BFC2_ARATH,F4KEA0_ARATH Remorin (DNA-binding protein),Uncharacterized protein At3g61260,Remorin family protein (Remorin-like protein),Remorin family protein (Similarity to remorin) (Uncharacterized protein At5g23750) (Uncharacterized protein MRO11.3),Remorin family protein FUNCTION: Exhibits a non sequence-specific DNA-binding activity. 20968,23144,19678,22452,25364,22323 Remorin (DNA-binding protein),Uncharacterized protein At3g61260,Remorin family protein (Remorin-like protein),Remorin family protein (Similarity to remorin) (Uncharacterized protein At5g23750) (Uncharacterized protein MRO11.3),Remorin family protein plasma membrane [GO:0005886],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques, with a maximal expression in apical regions. {ECO:0000269|PubMed:16666616}. locus:2050704;,locus:2098921;,locus:2101303;,locus:2172793; AT2G45820,AT3G61260,AT3G48940,AT5G23750 Remorin family Os02g0642200 protein (Putative remorin 1) (cDNA clone:001-107-E02, full insert sequence),OSJNBb0039L24.13 protein (Os04g0533300 protein) (cDNA clone:001-014-B04, full insert sequence) (cDNA clone:001-208-D04, full insert sequence) (cDNA clone:J013002A11, full insert sequence),Os04g0533300 protein (Fragment) Q6H7R8,Q7XMK5,A0A0N7KJF0 Q6H7R8_ORYSJ,Q7XMK5_ORYSJ,A0A0N7KJF0_ORYSJ Os02g0642200 Os02g0642200 OJ1112_G03.12 OsJ_07690 OSNPB_020642200,Os04g0533300 OsJ_15583 OSJNBb0039L24.13 OSNPB_040533300,Os04g0533300 OSNPB_040533300 ENOG411DZ3D UGD3,UGD1,UGD2,UGD4,T4P13.31 Q9LF33,Q9FZE1,Q9LIA8,Q9FM01,Q9MAB5 UGDH3_ARATH,UGDH1_ARATH,UGDH2_ARATH,UGDH4_ARATH,Q9MAB5_ARATH UDP-glucose 6-dehydrogenase 3 (UDP-Glc dehydrogenase 3) (UDP-GlcDH 3) (UDPGDH 3) (EC 1.1.1.22) (At-UGD3),UDP-glucose 6-dehydrogenase 1 (UDP-Glc dehydrogenase 1) (UDP-GlcDH 1) (UDPGDH 1) (EC 1.1.1.22) (At-UGD1),UDP-glucose 6-dehydrogenase 2 (UDP-Glc dehydrogenase 2) (UDP-GlcDH 2) (UDPGDH 2) (EC 1.1.1.22) (At-UGD2),UDP-glucose 6-dehydrogenase 4 (UDP-Glc dehydrogenase 4) (UDP-GlcDH 4) (UDPGDH 4) (EC 1.1.1.22) (At-UGD4),Putative UDP-glucose 6-dehydrogenase (UDP-glucose/GDP-mannose dehydrogenase family protein) DISRUPTION PHENOTYPE: No visible phenotype. Displays smaller nematode-induced syncytia. Ugd2 and ugd3 double mutant displays a strong dwarf phenotype and often develops seedlings with severe root defects; cell walls have an altered sugar composition (PubMed:21949134). Ugd2 and ugd3 double mutant displays abnormal nematode-induced syncytia (PubMed:22848518). {ECO:0000269|PubMed:21949134, ECO:0000269|PubMed:22848518}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:22848518}.,DISRUPTION PHENOTYPE: No visible phenotype. Displays smaller nematode-induced syncytia. The UGD2 UGD3 double mutant displays a strong dwarf phenotype and often develops seedlings with severe root defects; cell walls have an altered sugar composition (PubMed:21949134). Ugd2 and ugd3 double mutants display abnormal nematode-induced syncytia (PubMed:22848518). {ECO:0000269|PubMed:21949134, ECO:0000269|PubMed:22848518}. FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. Required for the formation of cell wall ingrowths on the outer cell walls of nematode-induced syncytia. {ECO:0000269|PubMed:21949134, ECO:0000269|PubMed:22848518}.,FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. {ECO:0000269|PubMed:16817893}.,FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. Required for the formation of cell wall ingrowths on the outer cell walls of nematode-induced syncytia. {ECO:0000269|PubMed:10758504, ECO:0000269|PubMed:21949134, ECO:0000269|PubMed:22848518}.,FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. PATHWAY: Nucleotide-sugar biosynthesis; UDP-alpha-D-glucuronate biosynthesis; UDP-alpha-D-glucuronate from UDP-alpha-D-glucose: step 1/1. ARA:AT5G15490-MONOMER;,ARA:AT1G26570-MONOMER;,ARA:AT3G29360-MONOMER;,ARA:AT5G39320-MONOMER;,ARA:AT3G01010-MONOMER; R-ATH-173599; 1.1.1.22; 1.1.1.22 53117,52972,53173,53097,18258 UDP-glucose 6-dehydrogenase 3 (UDP-Glc dehydrogenase 3) (UDP-GlcDH 3) (UDPGDH 3) (EC 1.1.1.22) (At-UGD3),UDP-glucose 6-dehydrogenase 1 (UDP-Glc dehydrogenase 1) (UDP-GlcDH 1) (UDPGDH 1) (EC 1.1.1.22) (At-UGD1),UDP-glucose 6-dehydrogenase 2 (UDP-Glc dehydrogenase 2) (UDP-GlcDH 2) (UDPGDH 2) (EC 1.1.1.22) (At-UGD2),UDP-glucose 6-dehydrogenase 4 (UDP-Glc dehydrogenase 4) (UDP-GlcDH 4) (UDPGDH 4) (EC 1.1.1.22) (At-UGD4),Putative UDP-glucose 6-dehydrogenase (UDP-glucose/GDP-mannose dehydrogenase family protein) cell wall [GO:0005618]; cytosol [GO:0005829]; nucleus [GO:0005634]; NAD binding [GO:0051287]; UDP-glucose 6-dehydrogenase activity [GO:0003979]; carbohydrate metabolic process [GO:0005975]; cell wall pectin metabolic process [GO:0052546]; glycosaminoglycan biosynthetic process [GO:0006024]; UDP-glucuronate biosynthetic process [GO:0006065],cytosol [GO:0005829]; nucleus [GO:0005634]; NAD binding [GO:0051287]; UDP-glucose 6-dehydrogenase activity [GO:0003979]; glycosaminoglycan biosynthetic process [GO:0006024]; UDP-glucuronate biosynthetic process [GO:0006065],cytosol [GO:0005829]; nucleus [GO:0005634]; NAD binding [GO:0051287]; UDP-glucose 6-dehydrogenase activity [GO:0003979]; carbohydrate metabolic process [GO:0005975]; cell wall pectin metabolic process [GO:0052546]; glycosaminoglycan biosynthetic process [GO:0006024]; UDP-glucuronate biosynthetic process [GO:0006065],apoplast [GO:0048046]; cytosol [GO:0005829]; nucleus [GO:0005634]; NAD binding [GO:0051287]; UDP-glucose 6-dehydrogenase activity [GO:0003979]; glycosaminoglycan biosynthetic process [GO:0006024]; UDP-glucuronate biosynthetic process [GO:0006065],cytosol [GO:0005829]; nucleus [GO:0005634]; NAD binding [GO:0051287]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616]; glycosaminoglycan biosynthetic process [GO:0006024] DEVELOPMENTAL STAGE: Restricted expression to the primary root in young seedlings. Later detected in hypocotyl, leaves and flowers. {ECO:0000269|PubMed:18057039}.,DEVELOPMENTAL STAGE: Restricted expression to the primary shoot in young seedlings. Later detected in hypocotyl, leaves and flowers. {ECO:0000269|PubMed:18057039}.,DEVELOPMENTAL STAGE: Restricted expression to the primary root in young seedlings. Later detected in hypocotyl, leaves but with the strongest expression in the root system. {ECO:0000269|PubMed:10758504, ECO:0000269|PubMed:18057039}. TISSUE SPECIFICITY: Preferentially expressed in roots. {ECO:0000269|PubMed:10758504}. locus:2180872;,locus:2197945;,locus:2093827;,locus:2157275;,locus:2102137; AT5G15490,AT1G26570,AT3G29360,AT5G39320,AT3G01010 UDP-glucose 6-dehydrogenase UDP-glucose 6-dehydrogenase 3 (UDP-Glc dehydrogenase 3) (UDP-GlcDH 3) (UDPGDH 3) (EC 1.1.1.22) (Os-UGD3),UDP-glucose 6-dehydrogenase 4 (UDP-Glc dehydrogenase 4) (UDP-GlcDH 4) (UDPGDH 4) (EC 1.1.1.22) (Os-UGD4),UDP-glucose 6-dehydrogenase 1 (UDP-Glc dehydrogenase 1) (UDP-GlcDH 1) (UDPGDH 1) (EC 1.1.1.22) (Os-UGD1),UDP-glucose 6-dehydrogenase 5 (UDP-Glc dehydrogenase 5) (UDP-GlcDH 5) (UDPGDH 5) (EC 1.1.1.22) (Os-UGD5),Os03g0147150 protein Q9AUV6,Q2QS14,Q75GS4,Q2QS13,A0A0P0VT22 UGDH3_ORYSJ,UGDH4_ORYSJ,UGDH1_ORYSJ,UGDH5_ORYSJ,A0A0P0VT22_ORYSJ UGD3 Os03g0757900 LOC_Os03g55070 OsJ_12653 OSJNBa0040E01.8,UGD4 Os12g0443500 LOC_Os12g25690 OsJ_35985,UGD1 Os03g0425600 LOC_Os03g31210 OSJNBa0020H02.10,UGD5 Os12g0443600 LOC_Os12g25700 OsJ_35986,Os03g0147150 OSNPB_030147150 FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. {ECO:0000250}. ENOG411DZ3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os09g0343200 protein,Ankyrin-like protein (Os09g0330700 protein),Os08g0401100 protein (cDNA clone:J033023C05, full insert sequence),Os09g0337300 protein (cDNA clone:J033070B14, full insert sequence),Os09g0322500 protein,Os09g0329266 protein,Os09g0341200 protein,Os12g0283700 protein Q0J2H4,Q6EPK9,Q0J5U5,Q0J2I9,A0A0P0XL82,A0A0P0XK79,A0A0P0XLX5,A0A0P0Y935 Q0J2H4_ORYSJ,Q6EPK9_ORYSJ,Q0J5U5_ORYSJ,Q0J2I9_ORYSJ,A0A0P0XL82_ORYSJ,A0A0P0XK79_ORYSJ,A0A0P0XLX5_ORYSJ,A0A0P0Y935_ORYSJ Os09g0343200 OSNPB_090343200,Os09g0330700 OSJNBa0040N23.20 OSNPB_090330700,Os08g0401100 Os08g0401100 OSNPB_080401100,Os09g0337300 Os09g0337300 OsJ_28948 OSNPB_090337300,Os09g0322500 OSNPB_090322500,Os09g0329266 OSNPB_090329266,Os09g0341200 OSNPB_090341200,Os12g0283700 OSNPB_120283700 ENOG411DZ3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-fructofuranosidase NA NA NA NA NA NA NA ENOG411DZ3A Q8H1Q3,F4KED5,B3H6U1 Q8H1Q3_ARATH,F4KED5_ARATH,B3H6U1_ARATH Ubiquitin system component Cue protein (Uncharacterized protein At5g32440),Ubiquitin system component Cue protein 29632,29789,20599 Ubiquitin system component Cue protein (Uncharacterized protein At5g32440),Ubiquitin system component Cue protein locus:2145801; AT5G32440 CUE domain Os06g0642900 protein (cDNA clone:J033072G12, full insert sequence) Q67WV6 Q67WV6_ORYSJ Os06g0642900 Os06g0642900 OsJ_22125 OSNPB_060642900 P0416A11.21 ENOG411DZ3R MLO3 Q94KB9 MLO3_ARATH MLO-like protein 3 (AtMlo3) FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}. 58563 MLO-like protein 3 (AtMlo3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2078292; AT3G45290 May be involved in modulation of pathogen defense and leaf cell death NA NA NA NA NA NA NA ENOG411DZ35 LPXB F4IF99 LPXB_ARATH Probable lipid-A-disaccharide synthase, mitochondrial (EC 2.4.1.182) (Protein LIPID X B) (AtLpxB) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants lacking LPXB accumulate high levels of 2,3-diacylglucosamine-1-phosphate and UDP-2,3-diacylglucosamine. {ECO:0000269|PubMed:21709257}. FUNCTION: Condensation of UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses (Potential). {ECO:0000305}. PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 5/6. {ECO:0000269|PubMed:21709257}. 2.4.1.182; 2.4.1.182 51465 Probable lipid-A-disaccharide synthase, mitochondrial (EC 2.4.1.182) (Protein LIPID X B) (AtLpxB) cytosol [GO:0005829]; mitochondrion [GO:0005739]; lipid-A-disaccharide synthase activity [GO:0008915]; phospholipid binding [GO:0005543]; lipid A biosynthetic process [GO:0009245]; lipid X metabolic process [GO:2001289] locus:2058329; AT2G04560 Lipid-A-disaccharide Os01g0752600 protein (Putative Lipid-A-disaccharide synthase) (cDNA clone:J023132C04, full insert sequence) Q5JMX5 Q5JMX5_ORYSJ Os01g0752600 Os01g0752600 OsJ_03478 OSNPB_010752600 P0435B05.24 ENOG411DZ33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain Os07g0621800 protein (Putative alcohol dehydrogenase) (cDNA clone:J023114G08, full insert sequence),Os03g0189400 protein (Oxidoreductase, zinc-binding dehydrogenase family protein, expressed) (cDNA clone:J013121M03, full insert sequence) Q8LHA1,Q10QP0 Q8LHA1_ORYSJ,Q10QP0_ORYSJ P0594D10.128 Os07g0621800 OsJ_25166 OSNPB_070621800,Os03g0189400 LOC_Os03g08999 Os03g0189400 OSNPB_030189400 ENOG411DZ32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0577100 protein A0A0N7KS97 A0A0N7KS97_ORYSJ Os10g0577100 OSNPB_100577100 ENOG411DZ31 TOP3A Q9LVP1 TOP3A_ARATH DNA topoisomerase 3-alpha (EC 5.99.1.2) DISRUPTION PHENOTYPE: Severe developmental defects and early lethality. {ECO:0000269|PubMed:19096507}. viable but completely sterile; exhibits fragmented chromosomes during mitosis and sensitivity to camptothecin.,severely impaired in growth and barely germinated on growth medium or in soil; the mutants had deformed cotyledons and were not able to form roots at all. Null: Seedling lethal; Knockdown: Sterile-H. Puchta-2008 FUNCTION: Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Essential component of the RMI complex, a complex that plays an important role in the resolution step of homologous recombination, in a process called Holliday Junction dissolution, to limit DNA crossover formation in cells. Together with RMI1, is essential for the resolution of meiotic recombination intermediates, a step that prevents entanglement of the parental chromosomes. May have DNA decatenation activity. {ECO:0000269|PubMed:19096507}. 5.99.1.2 103407 DNA topoisomerase 3-alpha (EC 5.99.1.2) chromosome [GO:0005694]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type I activity [GO:0003917]; zinc ion binding [GO:0008270]; chromosome segregation [GO:0007059]; DNA repair [GO:0006281]; DNA topological change [GO:0006265]; resolution of meiotic recombination intermediates [GO:0000712] locus:2160841; AT5G63920 dna topoisomerase DNA topoisomerase 3-alpha (EC 5.99.1.2),DNA topoisomerase (EC 5.99.1.2) (Fragment) C7J0A2,A0A0P0VTL7 TOP3A_ORYSJ,A0A0P0VTL7_ORYSJ TOP3A Os03g0165000 LOC_Os03g06900 OJ1123F12.5,Os03g0165000 OSNPB_030165000 FUNCTION: Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Essential component of the RMI complex, a complex that plays an important role in the resolution step of homologous recombination, in a process called Holliday Junction dissolution, to limit DNA crossover formation in cells (By similarity). {ECO:0000250}.,FUNCTION: Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. {ECO:0000256|RuleBase:RU362092}. ENOG411DZ30 CYCB3-1 Q9SA32 CCB31_ARATH Putative cyclin-B3-1 (G2/mitotic-specific cyclin-B3-1) (CycB3;1) 45190 Putative cyclin-B3-1 (G2/mitotic-specific cyclin-B3-1) (CycB3;1) nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301] locus:2032870; AT1G16330 Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411EMDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EMDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein SKIP19-like Os02g0317300 protein (Putative N7 protein) (cDNA clone:J023114H08, full insert sequence) Q6Z846 Q6Z846_ORYSJ Os02g0317300 OSNPB_020317300 P0572D06.34 ENOG411EMDD A0A1P8AME4,F4HUD5,F4HUD6,F4HUD4 A0A1P8AME4_ARATH,F4HUD5_ARATH,F4HUD6_ARATH,F4HUD4_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein R-ATH-8876725; 23540,30992,36001,35173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:1006230779; AT1G08125 Putative methyltransferase Os02g0818700 protein B9F4I3 B9F4I3_ORYSJ Os02g0818700 OsJ_08886 OSNPB_020818700 ENOG411EM6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411EM6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os11g0656500 protein (Retrotransposon protein, putative, unclassified, expressed) Q2R072 Q2R072_ORYSJ Os11g0656500 LOC_Os11g43560 Os11g0656500 OSNPB_110656500 ENOG411EM6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EJF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cell differentiation Inactive protein FON2 SPARE1 (CLAVATA3/ESR (CLE)-related protein 202) (OsCLE202) Q6Z6T2 FOS1_ORYSJ FOS1 CLE202 Os02g0324400 LOC_Os02g21890 OsJ_06495 P0688H12.37 FUNCTION: Non functional suppressor of the fon2 mutation. In Oryza sativa subsp. japonica, the protein has a single amino acid substitution at the putative processing site of the signal peptide while in all the other varieties/species of domesticated and wild rice tested the protein is functional. {ECO:0000269|PubMed:19834537}. ENOG411EJF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0337100 protein (Fragment) A0A0P0XEG3 A0A0P0XEG3_ORYSJ Os08g0337100 OSNPB_080337100 ENOG411EJF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJF4 F4KIP1 F4KIP1_ARATH Uncharacterized protein 16062 Uncharacterized protein locus:504954898; AT5G40595 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EJF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rdx family NA NA NA NA NA NA NA ENOG411EJF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0293100 protein (cDNA clone:J023075F10, full insert sequence) Q84YX5 Q84YX5_ORYSJ Os08g0293100 Os08g0293100 OJ1705_A03.12 OSJNBb0075O18.125 OSNPB_080293100 ENOG411EJFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EJFE O80762 FBD3_ARATH FBD-associated F-box protein At1g60410 46185 FBD-associated F-box protein At1g60410 locus:2195613; AT1G60410 NA NA NA NA NA NA NA NA ENOG411EJFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Responsible for the amidation of carboxylic groups at position A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP is hydrogenolyzed for each amidation (By similarity) NA NA NA NA NA NA NA ENOG411E4WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411DSPP BASS2 Q1EBV7 BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic (Bile acid transporter 1) (Bile acid-sodium symporter family protein 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants show increased sensitivity to mevastatin, an inhibitor of cytosolic isopentenyl diphosphate biosynthesis. Chloroplasts isolated from mutant plants lack sodium-dependent pyruvate uptake activity. {ECO:0000269|PubMed:21866161}. FUNCTION: Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids. {ECO:0000269|PubMed:21866161}. R-ATH-425366; 43608 Sodium/pyruvate cotransporter BASS2, chloroplastic (Bile acid transporter 1) (Bile acid-sodium symporter family protein 2) chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021]; pyruvate transmembrane transporter activity [GO:0050833]; plasma membrane pyruvate transport [GO:0006849] TISSUE SPECIFICITY: Expressed in developing leaves. {ECO:0000269|PubMed:21866161}. locus:2039533; AT2G26900 bile acid sodium symporter family protein Probable sodium/metabolite cotransporter BASS2, chloroplastic (Bile acid-sodium symporter family protein 2) Q5VRB2 BASS2_ORYSJ BASS2 SBF1 Os01g0645200 LOC_Os01g45750 OsJ_02805 P0707D10.23-1 FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. ENOG411EM60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EM61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411DSPH MDF20.5 Q9FM77,F4K4X9 Q9FM77_ARATH,F4K4X9_ARATH Isopentenyl-diphosphate delta-isomerase (Uncharacterized protein At5g55610),Isopentenyl-diphosphate delta-isomerase 36056,31488 Isopentenyl-diphosphate delta-isomerase (Uncharacterized protein At5g55610),Isopentenyl-diphosphate delta-isomerase chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; isomerase activity [GO:0016853],isomerase activity [GO:0016853] locus:2162132; AT5G55610 NA Expressed protein (Os12g0498800 protein) (cDNA clone:J013119P15, full insert sequence) Q2QQC8 Q2QQC8_ORYSJ LOC_Os12g31490 Os12g0498800 OSNPB_120498800 ENOG411E1FA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein OJ991214_12.17 protein (OSJNBa0033G16.4 protein) (Os04g0416700 protein) (cDNA clone:J013139L19, full insert sequence) Q7X7T9 Q7X7T9_ORYSJ OJ991214_12.17 Os04g0416700 OsJ_14762 OSJNBa0033G16.4 OSNPB_040416700 ENOG411DUFT HASPIN O80528 HASP_ARATH Serine/threonine-protein kinase haspin homolog (AtHaspin) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:21749502}. FUNCTION: Threonine-protein kinase that phosphorylates histone H3 in vitro at 'Thr-3' (H3T3ph) and 'Thr-11' (H3T11ph), but not at 'Ser-10' (H3S10ph) or 'Ser-28' (H3S28ph). Plays a role in mitotic cell division during plant growth (PubMed:21527018). Threonine-protein kinase that phosphorylates histone H3 in vitro at 'Thr-3' (H3T3ph), but not at 'Thr-11' (H3T11ph), 'Ser-10' (H3S10ph) or 'Ser-28' (H3S28ph). Involved in histone H3 phosphorylation in mitotic cells. Contributes to organ and plant development, as well as embryonic patterning (PubMed:21749502). {ECO:0000269|PubMed:21527018, ECO:0000269|PubMed:21749502}. MISCELLANEOUS: Over-expression of an inactive kinase mutant decreases the size of the root meristem and delays root growth. {ECO:0000269|PubMed:21527018}. 2.7.11.1 67930 Serine/threonine-protein kinase haspin homolog (AtHaspin) (EC 2.7.11.1) chromosome [GO:0005694]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; histone kinase activity (H3-T11 specific) [GO:0035402]; histone kinase activity (H3-T3 specific) [GO:0072354]; cell cycle [GO:0007049]; histone H3-T11 phosphorylation [GO:0035407]; histone H3-T3 phosphorylation [GO:0072355]; intracellular signal transduction [GO:0035556] DEVELOPMENTAL STAGE: During embryogenesis, expressed in embryos and suspensors from the one-cell stage to the four-cell stage. Expressed in the embryo until the torpedo stage. {ECO:0000269|PubMed:21527018}. TISSUE SPECIFICITY: Expressed in meristems and primordia of root tips, lateral roots, shoot apex, leaves and flowers. {ECO:0000269|PubMed:21527018}. locus:2012340; AT1G09450 serine threonine-protein kinase Os07g0637600 protein A0A0N7KNX5 A0A0N7KNX5_ORYSJ Os07g0637600 OSNPB_070637600 ENOG411EF5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0610000 protein A0A0P0V554 A0A0P0V554_ORYSJ Os01g0610000 OSNPB_010610000 ENOG411EF5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF5I LTP5 Q9XFS7 NLTP5_ARATH Non-specific lipid-transfer protein 5 (LTP 5) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 12495 Non-specific lipid-transfer protein 5 (LTP 5) cell wall [GO:0005618]; membrane [GO:0016020]; plasmodesma [GO:0009506]; lipid binding [GO:0008289]; lipid transporter activity [GO:0005319]; lipid transport [GO:0006869] locus:2081855; AT3G51600 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411EF5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EF5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF5B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain BHLH transcription factor (Os05g0103000 protein) (cDNA clone:J013044E05, full insert sequence) Q75M33 Q75M33_ORYSJ Os05g0103000 Os05g0103000 OsJ_16787 OSNPB_050103000 P0036D10.20 P0668H12.5 ENOG411EF5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDA1/CD39 (nucleoside phosphatase) family NA NA NA NA NA NA NA ENOG411EF5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: crossover junction endonuclease MUS81 NA NA NA NA NA NA NA ENOG411EF5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0369950 protein (Fragment),Os06g0215533 protein (Fragment),Os06g0215750 protein (Fragment),Os04g0443850 protein,Os06g0216350 protein (Fragment) A0A0N7KCZ2,A0A0P0WUD8,A0A0P0WUH6,A0A0N7KJ42,A0A0P0WUA8 A0A0N7KCZ2_ORYSJ,A0A0P0WUD8_ORYSJ,A0A0P0WUH6_ORYSJ,A0A0N7KJ42_ORYSJ,A0A0P0WUA8_ORYSJ Os01g0369950 OSNPB_010369950,Os06g0215533 OSNPB_060215533,Os06g0215750 OSNPB_060215750,Os04g0443850 OSNPB_040443850,Os06g0216350 OSNPB_060216350 ENOG411EF5T F4IS71 F4IS71_ARATH RING/FYVE/PHD zinc finger superfamily protein 30052 RING/FYVE/PHD zinc finger superfamily protein zinc ion binding [GO:0008270] locus:2056710; AT2G02960 Protein of unknown function (DUF3675) NA NA NA NA NA NA NA ENOG411EF5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein NA NA NA NA NA NA NA ENOG411EF58 AT2S1,AT2S2,AT2S4,AT2S3 P15457,P15458,P15460,P15459 2SS1_ARATH,2SS2_ARATH,2SS4_ARATH,2SS3_ARATH 2S seed storage protein 1 (2S albumin storage protein) (NWMU2-2S albumin 1) [Cleaved into: 2S seed storage protein 1 small subunit; 2S seed storage protein 1 large subunit],2S seed storage protein 2 (2S albumin storage protein) (NWMU2-2S albumin 2) [Cleaved into: 2S seed storage protein 2 small subunit; 2S seed storage protein 2 large subunit],2S seed storage protein 4 (2S albumin storage protein) (NWMU2-2S albumin 4) [Cleaved into: 2S seed storage protein 4 small subunit; 2S seed storage protein 4 large subunit],2S seed storage protein 3 (2S albumin storage protein) (NWMU2-2S albumin 3) [Cleaved into: 2S seed storage protein 3 small subunit; 2S seed storage protein 3 large subunit] FUNCTION: This is a 2S seed storage protein. MISCELLANEOUS: This is the most abundant isoform of 2S albumin in Arabidopsis. 19014,19361,19169,18762 2S seed storage protein 1 (2S albumin storage protein) (NWMU2-2S albumin 1) [Cleaved into: 2S seed storage protein 1 small subunit; 2S seed storage protein 1 large subunit],2S seed storage protein 2 (2S albumin storage protein) (NWMU2-2S albumin 2) [Cleaved into: 2S seed storage protein 2 small subunit; 2S seed storage protein 2 large subunit],2S seed storage protein 4 (2S albumin storage protein) (NWMU2-2S albumin 4) [Cleaved into: 2S seed storage protein 4 small subunit; 2S seed storage protein 4 large subunit],2S seed storage protein 3 (2S albumin storage protein) (NWMU2-2S albumin 3) [Cleaved into: 2S seed storage protein 3 small subunit; 2S seed storage protein 3 large subunit] nutrient reservoir activity [GO:0045735],nutrient reservoir activity [GO:0045735]; protein histidine kinase binding [GO:0043424] locus:2136477;,locus:2136472;,locus:2136496;,locus:2136486; AT4G27140,AT4G27150,AT4G27170,AT4G27160 2S seed storage protein NA NA NA NA NA NA NA ENOG411EF56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EF54 MPF21.6,MPF21.8,T24C10.9 Q9FGA6,Q9FGA4,Q9FZ34 Q9FGA6_ARATH,Q9FGA4_ARATH,Q9FZ34_ARATH At5g50050 (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Similarity to pollen-specific protein Bnm1),Plant invertase/pectin methylesterase inhibitor superfamily protein (T24C10.9 protein) (Uncharacterized protein F14C21.31) 18654,19586,19727 At5g50050 (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Similarity to pollen-specific protein Bnm1),Plant invertase/pectin methylesterase inhibitor superfamily protein (T24C10.9 protein) (Uncharacterized protein F14C21.31) enzyme inhibitor activity [GO:0004857] locus:2170076;,locus:2170096;,locus:2010960; AT5G50050,AT5G50070,AT1G54980 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EF55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EF52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin NA NA NA NA NA NA NA ENOG411EF53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0020J04.5 protein (Os04g0576500 protein) (cDNA clone:J013074O19, full insert sequence) Q7XUH7 Q7XUH7_ORYSJ Os04g0576500 Os04g0576500 OsJ_15863 OSJNBa0020J04.5 OSNPB_040576500 ENOG411EF51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EI28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI24 Q8GYP2 Q8GYP2_ARATH At1g24145 (Transmembrane protein) 14118 At1g24145 (Transmembrane protein) integral component of membrane [GO:0016021] locus:1005716746; AT1G24145 NA NA NA NA NA NA NA NA ENOG411EI25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI26 F4IHD4,A0A1P8AX73,F4J368 F4IHD4_ARATH,A0A1P8AX73_ARATH,F4J368_ARATH Uncharacterized protein (Fragment),Uncharacterized protein 37495,31323,74027 Uncharacterized protein (Fragment),Uncharacterized protein locus:2046906;,locus:504955617; AT2G14800,AT3G44713 NA NA NA NA NA NA NA NA ENOG411EI20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EI22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0174300 protein A0A0P0Y7H8 A0A0P0Y7H8_ORYSJ Os12g0174300 OSNPB_120174300 ENOG411EI2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2W Q9FXB5 Q9FXB5_ARATH F25P12.91 protein (MAEBL domain protein) 60749 F25P12.91 protein (MAEBL domain protein) locus:2027513; AT1G56660 NA NA NA NA NA NA NA NA ENOG411EI2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY Putative cysteine proteinase inhibitor 7 (Oryzacystatin VII) (OC-VII) (Oryzacystatin-7),Putative cysteine proteinase inhibitor 9 (Oryzacystatin IX) (OC-IX) (Oryzacystatin-9) Q10Q47,Q10Q48 CYT7_ORYSJ,CYT9_ORYSJ Os03g0210100 LOC_Os03g11170 OsJ_09871,Os03g0210000 LOC_Os03g11160 OsJ_09870 FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. ENOG411EI2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0843200 protein Q5N9W7 Q5N9W7_ORYSJ Os01g0843200 OsJ_04045 OSNPB_010843200 P0406G08.26 ENOG411EI2S CLE42 Q6IWB2 CLE42_ARATH CLAVATA3/ESR (CLE)-related protein 42 [Cleaved into: CLE42p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses tracheary element differentiation but promotes the formation of procambial cells. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:16902140, ECO:0000269|PubMed:19011104}. 10106 CLAVATA3/ESR (CLE)-related protein 42 [Cleaved into: CLE42p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; axillary shoot meristem initiation [GO:0090506]; cell division [GO:0051301]; cell-cell signaling involved in cell fate commitment [GO:0045168]; secondary shoot formation [GO:0010223]; vasculature development [GO:0001944] TISSUE SPECIFICITY: Expressed at low levels in seedlings, roots and inflorescence. {ECO:0000269|PubMed:16489133}. locus:4010713679; AT2G34925 NA NA NA NA NA NA NA NA ENOG411EI2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2N F16M2_10 Q9M1X3 Q9M1X3_ARATH AT3g63160/F16M2_10 (At3g63160) (Chloroplast outer envelope membrane protein) (Outer envelope membrane protein) (Uncharacterized protein At3g63160) (Uncharacterized protein F16M2_10) 7256 AT3g63160/F16M2_10 (At3g63160) (Chloroplast outer envelope membrane protein) (Outer envelope membrane protein) (Uncharacterized protein At3g63160) (Uncharacterized protein F16M2_10) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579] locus:2077224; AT3G63160 NA NA NA NA NA NA NA NA ENOG411EI2H GRP5 Q9LTP5 GRP5_ARATH Glycine-rich protein 5 (AtGRP-5) (AtGRP5) DISRUPTION PHENOTYPE: Reduced organ length (e.g. inflorescence axis and roots). {ECO:0000269|PubMed:19434422}. Small leaves; Short roots and inflorescence stems-G. Sachetto-Martins-2009 FUNCTION: Involved in organ growth by promoting cell elongation processes. {ECO:0000269|PubMed:19434422}. 13718 Glycine-rich protein 5 (AtGRP-5) (AtGRP5) plant-type cell wall [GO:0009505]; plant-type vacuole [GO:0000325]; structural constituent of cell wall [GO:0005199]; positive regulation of cell growth [GO:0030307]; positive regulation of organ growth [GO:0046622]; response to abscisic acid [GO:0009737]; response to flooding [GO:0009413]; response to salicylic acid [GO:0009751] DEVELOPMENTAL STAGE: Expressed during somatic embryogenesis, especially in cells undergoing the first anatomical modifications leading to somatic embryo development. Accumulates also during zygotic embryo development. First detected at heart-shape-torpedo transition in the whole embryos. Developmentally regulated in cotyledons and hypocotyl, being restricted to the radicule in early and late torpedo, until the embryo reaches maturity. Gradual decrease at the seed coat during seed development. After fertilization, restricted to the seed coat and endosperm. {ECO:0000269|PubMed:20195610}. TISSUE SPECIFICITY: Mostly expressed in immature seed pods, and, to a lower extent, in stems and leaves (PubMed:2152168). Present in phloem and epiderm in leaves, stems, flowers and fruits (PubMed:20195610). {ECO:0000269|PubMed:20195610, ECO:0000269|PubMed:2152168}. locus:2092394; AT3G20470 NA NA NA NA NA NA NA NA ENOG411EI2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger Os03g0648250 protein,Os05g0489500 protein (cDNA, clone: J065168G17, full insert sequence) C7IZC0,B7F8U6 C7IZC0_ORYSJ,B7F8U6_ORYSJ Os03g0648250 OSNPB_030648250,Os05g0489500 OSNPB_050489500 ENOG411EI2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2F Q9SK01 Q9SK01_ARATH At2g28570 (Expressed protein) 7909 At2g28570 (Expressed protein) locus:2056593; AT2G28570 NA NA NA NA NA NA NA NA ENOG411EI2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0181700 protein (Os05g0181800 protein) (Unknow protein),Os01g0183900 protein Q5KQJ4,Q5VRY3 Q5KQJ4_ORYSJ,Q5VRY3_ORYSJ Os05g0181700 Os05g0181800 OsJ_17353 OSNPB_050181700 P0453H11.13,Os01g0183900 OsJ_00654 OSNPB_010183900 P0489A01.20 ENOG411EI2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EI2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZ4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B561 Cytochrome b561 (Cytochrome b561 family protein, expressed) (Os10g0504200 protein) (Putative cytochrome b-561) Q9FVY1 Q9FVY1_ORYSJ LOC_Os10g36030 Os10g0504200 OsJ_32085 OSJNBb0073N24.15 OSNPB_100504200 ENOG411DZ45 F1P2.160 Q9SN77 Q9SN77_ARATH Transcription regulator/ zinc ion binding protein (Uncharacterized protein At3g47610) (Uncharacterized protein F1P2.160) 44560 Transcription regulator/ zinc ion binding protein (Uncharacterized protein At3g47610) (Uncharacterized protein F1P2.160) nucleus [GO:0005634]; transcription coactivator activity [GO:0003713]; zinc ion binding [GO:0008270]; positive regulation of transcription, DNA-templated [GO:0045893] locus:2079192; AT3G47610 activating signal cointegrator Os09g0413100 protein (Fragment) A0A0P0XM61 A0A0P0XM61_ORYSJ Os09g0413100 OSNPB_090413100 ENOG411E8K8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family NA NA NA NA NA NA NA ENOG411E8K9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0663000 protein (Fragment) A0A0N7KP05 A0A0N7KP05_ORYSJ Os07g0663000 OSNPB_070663000 ENOG411E8K2 Q1G3B3,A0A1I9LLN5 Q1G3B3_ARATH,A0A1I9LLN5_ARATH Uncharacterized protein 13393,11776 Uncharacterized protein locus:4515103035; AT3G05936 NA NA NA NA NA NA NA NA ENOG411E8K3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0281700 protein) Q8H8V9 Q8H8V9_ORYSJ Os03g0281700 LOC_Os03g17330 OsJ_10377 OSNPB_030281700 ENOG411E8K0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8K1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8K6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411E8K7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30S ribosomal protein S15 NA NA NA NA NA NA NA ENOG411E8K4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0846900 protein) Q10AN1 Q10AN1_ORYSJ Os03g0846900 LOC_Os03g62950 OSNPB_030846900 ENOG411E8K5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0239300 protein (Fragment),Os01g0383500 protein (Subtilase-like protein),Os05g0429100 protein (cDNA clone:001-028-A09, full insert sequence) (cDNA clone:J013158H21, full insert sequence),Os03g0743650 protein,Os02g0645975 protein,Os01g0795150 protein,Os07g0543700 protein (Fragment),Os11g0604350 protein,Os09g0477550 protein (Fragment),Os01g0794250 protein,Os04g0576250 protein C7JAA3,Q5VP04,B7E582,C7IZG9,A0A0P0VMA3,A0A0P0V9C0,A0A0P0X762,A0A0P0Y4D4,A0A0P0XN72,A0A0P0V941,A0A0P0WDR1 C7JAA3_ORYSJ,Q5VP04_ORYSJ,B7E582_ORYSJ,C7IZG9_ORYSJ,A0A0P0VMA3_ORYSJ,A0A0P0V9C0_ORYSJ,A0A0P0X762_ORYSJ,A0A0P0Y4D4_ORYSJ,A0A0P0XN72_ORYSJ,A0A0P0V941_ORYSJ,A0A0P0WDR1_ORYSJ Os12g0239300 Os12g0239300 OSNPB_120239300,OSJNBa0091E23.36 Os01g0383500 OSNPB_010383500,Os05g0429100 Os05g0429100 OSNPB_050429100,Os03g0743650 OSNPB_030743650,Os02g0645975 OSNPB_020645975,Os01g0795150 OSNPB_010795150,Os07g0543700 OSNPB_070543700,Os11g0604350 OSNPB_110604350,Os09g0477550 OSNPB_090477550,Os01g0794250 OSNPB_010794250,Os04g0576250 OSNPB_040576250 ENOG411E8KH psbM P62109 PSBM_ARATH Photosystem II reaction center protein M (PSII-M) FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface. {ECO:0000255|HAMAP-Rule:MF_00438}. 3783 Photosystem II reaction center protein M (PSII-M) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; photosynthesis, light reaction [GO:0019684] locus:504954646; ATCG00220 photosystem II reaction center protein M Photosystem II reaction center protein M (PSII-M) P0C413 PSBM_ORYSJ psbM Nip029 FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface. {ECO:0000255|HAMAP-Rule:MF_00438}. ENOG411E8KI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KB OEP7 Q9SVC4 OEP7_ARATH Outer envelope membrane protein 7 (AtOEP7) 6764 Outer envelope membrane protein 7 (AtOEP7) chloroplast outer membrane [GO:0009707]; integral component of chloroplast outer membrane [GO:0031359] TISSUE SPECIFICITY: Confined to green tissues. {ECO:0000269|PubMed:11595795}. locus:2079929; AT3G52420 NA NA NA NA NA NA NA NA ENOG411E8KC Q84VG5 Q84VG5_ARATH Transmembrane protein (Uncharacterized protein At3g13275) 7385 Transmembrane protein (Uncharacterized protein At3g13275) integral component of membrane [GO:0016021] locus:504955765; AT3G13275 NA NA NA NA NA NA NA NA ENOG411E8KA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KF Q8GYQ7 Q8GYQ7_ARATH Transmembrane protein (Uncharacterized protein At5g09225) 7850 Transmembrane protein (Uncharacterized protein At5g09225) integral component of membrane [GO:0016021] locus:1006230653; AT5G09225 NA NA NA NA NA NA NA NA ENOG411E8KG MT3 O22433,F4IYQ2 MT3_ARATH,F4IYQ2_ARATH Metallothionein-like protein 3 (MT-3),Metallothionein 3 FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals (Probable). Functions as metal chelator of copper (Cu) and zinc (Zn) (PubMed:18287486). Plays a role in Cu homeostasis, specifically in the remobilization of Cu from senescing leaves. The mobilization of Cu from internal sources is important for seed development (PubMed:24635746). {ECO:0000269|PubMed:18287486, ECO:0000269|PubMed:24635746, ECO:0000305}. 7373,7171 Metallothionein-like protein 3 (MT-3),Metallothionein 3 cell [GO:0005623]; copper ion binding [GO:0005507]; zinc ion binding [GO:0008270]; cellular copper ion homeostasis [GO:0006878] TISSUE SPECIFICITY: Expressed in leaf mesophyll cells, root tips, and at low levels in anthers. {ECO:0000269|Ref.8}. locus:505006351; AT3G15353 Metallothioneins have a high content of cysteine residues that bind various heavy metals Metallothionein-like protein 3B (Class I metallothionein-like protein 3B) (OsMT-I-3b),Metallothionein-like protein 3A (Class I metallothionein-like protein 3A) (OsMT-I-3a) (OsMT3) (OsMT3a),Os05g0202800 protein (Fragment) A3B0Y1,A1YTM8,A0A0P0WJD5 MT3B_ORYSJ,MT3A_ORYSJ,A0A0P0WJD5_ORYSJ MT3B Os05g0202800 LOC_Os05g11320 OsJ_016703 OSJNBa0015G13.2,MT3A ML2 Os01g0200700 LOC_Os01g10400 B1015E06.18 OsJ_00763,Os05g0202800 OSNPB_050202800 FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals. {ECO:0000305}. ENOG411E8KE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0518750 protein A0A0P0XQ75 A0A0P0XQ75_ORYSJ Os09g0518750 OSNPB_090518750 ENOG411E8KS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0511600 protein A0A0P0XIG6 A0A0P0XIG6_ORYSJ Os08g0511600 OSNPB_080511600 ENOG411E8KP SMR3 Q9LZ60 SMR3_ARATH Cyclin-dependent protein kinase inhibitor SMR3 (Protein SIAMESE-RELATED 3) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000269|PubMed:26546445}. 13308 Cyclin-dependent protein kinase inhibitor SMR3 (Protein SIAMESE-RELATED 3) nucleus [GO:0005634]; protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] TISSUE SPECIFICITY: Expressed at low levels in roots and stems. {ECO:0000269|PubMed:17098811}. locus:2181728; AT5G02420 NA NA NA NA NA NA NA NA ENOG411E8KQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan-rich protein (DUF2389) NA NA NA NA NA NA NA ENOG411E8KW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Regulatory subunit of type II PKA R-subunit NA NA NA NA NA NA NA ENOG411E3WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0610300 protein (Fragment) A0A0P0YCC3 A0A0P0YCC3_ORYSJ Os12g0610300 OSNPB_120610300 ENOG411E3WH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription regulatory region sequence-specific DNA binding Homeobox-leucine zipper protein HOX25 (HD-ZIP protein HOX25) (Homeodomain transcription factor HOX25) (OsHox25),Os09g0379600 protein A3BYC1,A0A0P0XML4 HOX25_ORYSJ,A0A0P0XML4_ORYSJ HOX25 Os09g0379600 LOC_Os09g21180 OsJ_028043 P0027G10.17,Os09g0379600 OSNPB_090379600 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E3WK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein L51 Mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed (Os03g0207250 protein) (cDNA, clone: J065201P12, full insert sequence) Q8H065 Q8H065_ORYSJ OSJNBa0014O06.7 LOC_Os03g10930 Os03g0207250 OsJ_09851 OSNPB_030207250 ENOG411E3WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: coiled-coil domain containing 65 NA NA NA NA NA NA NA ENOG411E3WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os01g0229500 protein (cDNA clone:002-139-B12, full insert sequence) Q9LWL3 Q9LWL3_ORYSJ Os01g0229500 Os01g0229500 OSNPB_010229500 P0485D09.12 ENOG411E3WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0711900 protein A0A0P0VNS0 A0A0P0VNS0_ORYSJ Os02g0711900 OSNPB_020711900 ENOG411E3WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os05g0568200 protein,Os05g0568250 protein A0A0P0WQG0,A0A0P0WQZ3 A0A0P0WQG0_ORYSJ,A0A0P0WQZ3_ORYSJ Os05g0568200 OSNPB_050568200,Os05g0568250 OSNPB_050568250 ENOG411E3WF Q8LD26,A0A1P8ASR5 DRMH3_ARATH,A0A1P8ASR5_ARATH Dormancy-associated protein homolog 3 (DRM1 homolog 3),Dormancy/auxin associated family protein 14518,17529 Dormancy-associated protein homolog 3 (DRM1 homolog 3),Dormancy/auxin associated family protein locus:2011831; AT1G56220 Dormancy auxin associated Os03g0342900 protein,Dormancy/auxin associated protein, expressed (Os03g0342900 protein) (cDNA clone:001-038-E04, full insert sequence) (cDNA clone:001-207-C05, full insert sequence) (cDNA clone:006-201-H09, full insert sequence) (cDNA clone:006-202-G12, full insert sequence) (cDNA clone:006-308-D04, full insert sequence) (cDNA clone:006-309-D12, full insert sequence) Q0DRZ9,Q10LM8 Q0DRZ9_ORYSJ,Q10LM8_ORYSJ Os03g0342900 Os03g0342900 OSNPB_030342900,Os03g0342900 LOC_Os03g22270 OSNPB_030342900 ENOG411E3WY ATL29 O49691 ATL29_ARATH RING-H2 finger protein ATL29 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL29) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 33242 RING-H2 finger protein ATL29 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL29) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2141005; AT4G17920 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E3WZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E3WQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os05g0199800 protein Q0DK30 Q0DK30_ORYSJ Os05g0199800 Os05g0199800 OSNPB_050199800 ENOG411E3WP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os10g0508700 protein (Pectinesterase inhibitor domain containing protein, expressed) (Putative stress-responsive protein) Q8LN75 Q8LN75_ORYSJ Os10g0508700 LOC_Os10g36500 Os10g0508700 OSJNBb0091N21.27 OSNPB_100508700 ENOG411E3WS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0687200 protein (cDNA clone:001-019-H07, full insert sequence),Os06g0687300 protein Q653G4,A0A0N7KMM1 Q653G4_ORYSJ,A0A0N7KMM1_ORYSJ Os06g0687200 Os06g0687200 OsJ_22420 OSNPB_060687200 P0623A10.22,Os06g0687300 OSNPB_060687300 ENOG411E3WU ERF043 Q9M080 ERF43_ARATH Ethylene-responsive transcription factor ERF043 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 24858 Ethylene-responsive transcription factor ERF043 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2134128; AT4G32800 Transcription factor Ap21 (Os01g0200600 protein) (Putative DRE binding factor 2) (cDNA clone:002-152-C11, full insert sequence) Q8LRE9 Q8LRE9_ORYSJ Os01g0200600 Os01g0200600 B1015E06.11 OSNPB_010200600 ENOG411E3WW AHB2 O24521 HBL2_ARATH Non-symbiotic hemoglobin 2 (ARAth GLB2) (Hb2) FUNCTION: May not function as an oxygen storage or transport protein, but might act as an oxygen sensor or play a role in electron transfer, possibly to a bound oxygen molecule. Has a low affinity for O(2). 17871 Non-symbiotic hemoglobin 2 (ARAth GLB2) (Hb2) heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxygen binding [GO:0019825]; oxygen transporter activity [GO:0005344]; fatty acid metabolic process [GO:0006631]; triglyceride biosynthetic process [GO:0019432] TISSUE SPECIFICITY: Expressed in rosette leaves but not in roots. locus:2075780; AT3G10520 May not function as an oxygen storage or transport protein but might act as an oxygen sensor or play a role in electron transfer possibly to a bound oxygen molecule NA NA NA NA NA NA NA ENOG411E3WV PTAC18 O48852,Q8GX30,Q9SKY2 O48852_ARATH,Q8GX30_ARATH,Q9SKY2_ARATH At2g32650 (Expressed protein) (RmlC-like cupins superfamily protein) (Uncharacterized protein At2g32650),At2g27402 (Plastid transcriptionally active protein),Plastid transcriptionally active 18 (Uncharacterized protein At2g32180) 16271,6007,16329 At2g32650 (Expressed protein) (RmlC-like cupins superfamily protein) (Uncharacterized protein At2g32650),At2g27402 (Plastid transcriptionally active protein),Plastid transcriptionally active 18 (Uncharacterized protein At2g32180) nucleoid [GO:0009295]; plastid chromosome [GO:0009508] locus:2046412;,locus:1006230002;,locus:2045532; AT2G32650,AT2G27402,AT2G32180 BEST Arabidopsis thaliana protein match is PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR AT2G32180.1) Os02g0784900 protein Q6K8V9 Q6K8V9_ORYSJ Os02g0784900 OJ1715_H01.28 OsJ_08638 OSNPB_020784900 ENOG411E3W9 T17J13.30 Q9M1R7,Q8GXD3,F4IK44 Q9M1R7_ARATH,Q8GXD3_ARATH,F4IK44_ARATH At3g62070 (Uncharacterized protein At3g62070) (Uncharacterized protein T17J13.30),AT4G01670 protein (At1g65690) (Uncharacterized protein At4g01670/T15B16_23),Fold protein 24572,27002,27794 At3g62070 (Uncharacterized protein At3g62070) (Uncharacterized protein T17J13.30),AT4G01670 protein (At1g65690) (Uncharacterized protein At4g01670/T15B16_23),Fold protein locus:2097983;,locus:2133367;,locus:2041414; AT3G62070,AT4G01670,AT2G46940 NA OSJNBa0004B13.24 protein (Os01g0284900 protein) (cDNA clone:002-113-A09, full insert sequence) Q9AQY8 Q9AQY8_ORYSJ OSJNBa0004B13.24 Os01g0284900 OsJ_01343 OSNPB_010284900 P0498A12.18 P0581F09.39 ENOG411E3W8 NRPB9A,NRPB9B Q6NLH0,Q8L5V0,A0A1P8B3U3 RPB9A_ARATH,RPB9B_ARATH,A0A1P8B3U3_ARATH DNA-directed RNA polymerases II, IV and V subunit 9A,DNA-directed RNA polymerases II, IV and V subunit 9B,DNA-directed RNA polymerase subunit DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with NRPB9B. No effect on methylation at RdDM target sites. Nrpb9a and nrpb9b double mutants are embryo lethal. {ECO:0000269|PubMed:22550619}.,DISRUPTION PHENOTYPE: Shorter siliques and ovate leaves with shorter petioles, smaller trichomes, prominent leaf veins and changed cuticular wax coating. Loss of methylation at RdDM target sites. Partially redundant with NRPB9A with respect to Pol II. Nrpb9a and nrpb9b double mutants are embryo lethal. {ECO:0000269|PubMed:22550619}. FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. Required for RNA silencing. {ECO:0000269|PubMed:19110459, ECO:0000269|PubMed:22550619}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|PIRNR:PIRNR005586}. MISCELLANEOUS: Pol IV and V functions are not impaired in nrpb9a mutants and Pol II functions are complemented by NRPB9B. {ECO:0000305|PubMed:22550619}.,MISCELLANEOUS: The loss of silencing in nrpb9b mutants is due to a defect in Pol V function, but not at the level of transcription. Pol IV functions are not impaired in nrpb9b mutants and Pol II functions are partially complemented by NRPB9A (PubMed:22550619). {ECO:0000305|PubMed:22550619}. R-ATH-113418;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 13276,13107,15310 DNA-directed RNA polymerases II, IV and V subunit 9A,DNA-directed RNA polymerases II, IV and V subunit 9B,DNA-directed RNA polymerase subunit DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase V complex [GO:0000419]; nucleolus [GO:0005730]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [GO:0001193]; mRNA cleavage [GO:0006379]; transcription initiation from RNA polymerase II promoter [GO:0006367]; transcription-coupled nucleotide-excision repair [GO:0006283],DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; nucleolus [GO:0005730]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [GO:0001193]; mRNA cleavage [GO:0006379]; RNA-directed DNA methylation [GO:0080188]; transcription initiation from RNA polymerase II promoter [GO:0006367]; transcription-coupled nucleotide-excision repair [GO:0006283],nucleolus [GO:0005730]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA cleavage [GO:0006379]; transcription, DNA-templated [GO:0006351] locus:2086042;,locus:505006478; AT3G16980,AT4G16265 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) DNA-directed RNA polymerase subunit,Os12g0560400 protein (Fragment),Os11g0676650 protein (Fragment) Q10T38,Q0IMM9,A0A0N7KTC4 Q10T38_ORYSJ,Q0IMM9_ORYSJ,A0A0N7KTC4_ORYSJ LOC_Os03g01230 Os03g0102200 OsJ_09063 OSNPB_030102200,Os12g0560400 Os12g0560400 OSNPB_120560400,Os11g0676650 OSNPB_110676650 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|PIRNR:PIRNR005586}. ENOG411E3W1 HMGB12,HMGB7,HMGB6 Q941D1,Q8LDF9,F4KCW4 HMG12_ARATH,HMGB7_ARATH,F4KCW4_ARATH High mobility group B protein 12 (Nucleosome/chromatin assembly factor group D 12),High mobility group B protein 7 (Nucleosome/chromatin assembly factor group D 07) (Nucleosome/chromatin assembly factor group D 7) (Protein NUCLEAR FUSION DEFECTIVE 7),High-mobility group box 6 DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. FUNCTION: Binds preferentially double-stranded supercoiled DNA (PubMed:14756567). Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus (PubMed:16698901). {ECO:0000269|PubMed:14756567, ECO:0000269|PubMed:16698901}. 17015,26982,18167 High mobility group B protein 12 (Nucleosome/chromatin assembly factor group D 12),High mobility group B protein 7 (Nucleosome/chromatin assembly factor group D 07) (Nucleosome/chromatin assembly factor group D 7) (Protein NUCLEAR FUSION DEFECTIVE 7),High-mobility group box 6 nucleus [GO:0005634]; DNA binding [GO:0003677],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197] TISSUE SPECIFICITY: Expressed at low levels in lateral roots, root tips, cotyledons, leaves and flowers (including pedicels, but excluding styles). {ECO:0000269|PubMed:17316617}. locus:505006631;,locus:2154433; AT5G23405,AT5G23420 high mobility group B protein 7-like HMG type nucleosome/chromatin assembly factor (Os08g0101100 protein) (Putative HMG type nucleosome/chromatin assembly factor D) (cDNA clone:J023035E20, full insert sequence) Q6Z1Z2 Q6Z1Z2_ORYSJ Os08g0101100 Os08g0101100 B1147B12.13 OsJ_25719 OSNPB_080101100 ENOG411E3W3 Q9LR57,Q9ZT81 CSPL1_ARATH,CSPLK_ARATH CASP-like protein 1C2 (AtCASPL1C2),CASP-like protein 1C1 (AtCASPL1C1) 17859,17670 CASP-like protein 1C2 (AtCASPL1C2),CASP-like protein 1C1 (AtCASPL1C1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] DEVELOPMENTAL STAGE: Expressed in the root maturation zone and, transiently, in emerged lateral roots. {ECO:0000269|PubMed:24920445}. TISSUE SPECIFICITY: Expressed in the stele of the root. {ECO:0000269|PubMed:24920445}. locus:2020773;,locus:2128776; AT1G03700,AT4G03540 CASP-like protein CASP-like protein BLE3 (CASP-like protein 1C2) (OsCASPL1C2) (Protein brassinolide-enhanced 3) (OsBLE3) (Protein BL-enhanced 3) Q84UT5 BLE3_ORYSJ BLE3 Os05g0245300 LOC_Os05g15630 OsJ_017008 OSJNBa0037H06.9 FUNCTION: Involved in cell elongation in rice through dual regulation by brassinolide and auxin. {ECO:0000269|PubMed:16808934}. ENOG411E3W2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os02g0143400 protein Q0E405 Q0E405_ORYSJ Os02g0143400 Os02g0143400 OsJ_05348 OSNPB_020143400 ENOG411E3W5 MWF20.18 Q9LSW5,O22690 Q9LSW5_ARATH,O22690_ARATH At5g43460/MWF20_18 (HR-like lesion-inducing protein-like protein) (Nicotiana lesion-inducing like),At1g04340/F19P19_23 (F19P19.23 protein) (HR-like lesion-inducing protein-like protein) 16903,17396 At5g43460/MWF20_18 (HR-like lesion-inducing protein-like protein) (Nicotiana lesion-inducing like),At1g04340/F19P19_23 (F19P19.23 protein) (HR-like lesion-inducing protein-like protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2176476;,locus:2018364; AT5G43460,AT1G04340 HR-like lesion-inducing NA NA NA NA NA NA NA ENOG411E3W7 MIK22.18 Q9FFL6 Q9FFL6_ARATH Gb|AAD25831.1 (Transmembrane protein) 22290 Gb|AAD25831.1 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2165149; AT5G35870 NA Expressed protein (Os12g0498900 protein) (cDNA clone:J033048E12, full insert sequence) Q2QQC6 Q2QQC6_ORYSJ Os12g0498900 LOC_Os12g31510 Os12g0498900 OSNPB_120498900 ENOG411E3W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Pectinesterase inhibitor 8 (Pectin methylesterase inhibitor 8) (OsPMEI8) Q6ETW4 PMEI8_ORYSJ PMEI8 Os02g0537000 LOC_Os02g33380 OsJ_07032 P0508B05.10 FUNCTION: Pectin methylesterase (PME) inhibitor that inhibits PME in vitro. {ECO:0000269|PubMed:26874295}. ENOG411EMIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: SMP-30 Gluconolaconase LRE domain protein NA NA NA NA NA NA NA ENOG411EMIB Q6DYC8 Q6DYC8_ARATH Chalcone-flavanone isomerase family protein 21017 Chalcone-flavanone isomerase family protein chloroplast stroma [GO:0009570]; fatty acid binding [GO:0005504]; isomerase activity [GO:0016853]; fatty acid metabolic process [GO:0006631] locus:2081003; AT3G51230 NA NA NA NA NA NA NA NA ENOG411EMIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHCH domain CHCH domain containing protein, expressed (Os03g0685500 protein) (cDNA clone:001-044-F09, full insert sequence) Q7XXS3 Q7XXS3_ORYSJ LOC_Os03g48080 Os03g0685500 OsJ_12145 OSJNBb0072E24.9 OSNPB_030685500 ENOG411EMIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others Os03g0712200 protein (Zinc finger family protein, putative, expressed) (cDNA clone:J013088B04, full insert sequence) (cDNA clone:J033024G06, full insert sequence) Q10E04 Q10E04_ORYSJ OSJNBb0033N16.15 LOC_Os03g50430 Os03g0712200 OSNPB_030712200 ENOG411E74H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0269600 protein,Os08g0269700 protein (cDNA clone:001-112-D04, full insert sequence) Q6ZAX6,Q6ZAX5 Q6ZAX6_ORYSJ,Q6ZAX5_ORYSJ Os08g0269600 OJ1540_G08.28 OsJ_26683 OSNPB_080269600,Os08g0269700 Os08g0269700 OJ1540_G08.29 OsJ_26684 OSNPB_080269700 ENOG411E74R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW NA NA NA NA NA NA NA ENOG411E74Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin containing amine oxidoreductase NA NA NA NA NA NA NA ENOG411E743 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Chromosome 16 open reading frame 62 NA NA NA NA NA NA NA ENOG411DQQB Z97340.18 Q9ZU41,Q940I8,Q8VZK6,Q9M9Q2,A0A1P8AM76,F4IN81,F4IN82 Q9ZU41_ARATH,Q940I8_ARATH,Q8VZK6_ARATH,Q9M9Q2_ARATH,A0A1P8AM76_ARATH,F4IN81_ARATH,F4IN82_ARATH At2g01260 (Predicted by genscan and genefinder) (Uncharacterized protein At2g01260),At4g16100 (Heat shock protein, putative (DUF789)) (Uncharacterized protein Z97340.18),Uncharacterized protein At5g49220,T15D22.8 (Uncharacterized protein At1g15030),Uncharacterized protein 41643,44659,45813,40491,32812,28955,36515 At2g01260 (Predicted by genscan and genefinder) (Uncharacterized protein At2g01260),At4g16100 (Heat shock protein, putative (DUF789)) (Uncharacterized protein Z97340.18),Uncharacterized protein At5g49220,T15D22.8 (Uncharacterized protein At1g15030),Uncharacterized protein locus:2038756;,locus:2130045;,locus:2155924;,locus:2196214; AT2G01260,AT4G16100,AT5G49220,AT1G15030 expressed protein Expressed protein (Os03g0831300 protein),Os07g0246600 protein Q10B37,B9FWE5 Q10B37_ORYSJ,B9FWE5_ORYSJ Os03g0831300 LOC_Os03g61580 Os03g0831300 OSNPB_030831300,Os07g0246600 OsJ_23699 OSNPB_070246600 ENOG411DQQC A0A1P8APK4,A2RVK8,A0A1P8APM3 A0A1P8APK4_ARATH,A2RVK8_ARATH,A0A1P8APM3_ARATH ELMO/CED-12 family protein,At1g03620 (ELMO/CED-12 family protein) 27251,30547,34901 ELMO/CED-12 family protein,At1g03620 (ELMO/CED-12 family protein) locus:2020753; AT1G03620 ELMO domain-containing protein OSJNBa0068L06.3 protein (Os04g0101700 protein) (cDNA clone:J023013E16, full insert sequence) Q7XTC0 Q7XTC0_ORYSJ Os04g0101700 OSJNBa0068L06.3 OSNPB_040101700 ENOG411DQQA NADK3 Q500Y9,A0A1P8AQ52 NADHK_ARATH,A0A1P8AQ52_ARATH NADH kinase (AtNADK-3) (EC 2.7.1.86),NAD(H) kinase 3 SALK_079342 (nadk3) is hypersensitive to oxidative stress ABA and osmotic stress. Germination sensitive to ABA, salt, and mannitol; Seedling growth sensitive to oxidative stress-X. Wang-2006 FUNCTION: Phosphorylates specifically NADH. Can phosphorylate NAD with a 100-fold decrease in efficiency compared to NADH. Prefers ATP as nucleoside triphosphate substrate. Can also utilize UTP, GTP and CTP. Key source of the cellular reductant NADPH which is an important antioxidant factor. {ECO:0000269|PubMed:15347288}. 2.7.1.23; 2.7.1.86 34831,37688 NADH kinase (AtNADK-3) (EC 2.7.1.86),NAD(H) kinase 3 cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; NAD+ kinase activity [GO:0003951]; NADH kinase activity [GO:0042736]; NAD metabolic process [GO:0019674]; NADP biosynthetic process [GO:0006741],NAD+ kinase activity [GO:0003951]; NAD metabolic process [GO:0019674]; NADP biosynthetic process [GO:0006741] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15711971}. locus:2202975; AT1G78590 (nad(h) kinase Probable NADH kinase (EC 2.7.1.86) Q6EQG2 NADHK_ORYSJ Os09g0345700 LOC_Os09g17680 OSJNBb0085I16.26 FUNCTION: Key source of the cellular reductant NADPH which is an important antioxidant factor. {ECO:0000250}. ENOG411DQQF SKIP6 Q9SJ04 SKIP6_ARATH F-box/kelch-repeat protein SKIP6 (SKP1-interacting partner 6) PATHWAY: Protein modification; protein ubiquitination. 41294 F-box/kelch-repeat protein SKIP6 (SKP1-interacting partner 6) protein ubiquitination [GO:0016567] locus:2052596; AT2G21950 F-box Kelch-repeat protein Os07g0673700 protein (SKP1(S-phase kinase associated protein) interacting partner 6 (SKIP6)-like protein) (cDNA clone:002-130-B04, full insert sequence) (cDNA clone:J013082K04, full insert sequence) Q8H451 Q8H451_ORYSJ P0470D12.145 Os07g0673700 OSNPB_070673700 P0304A10.2 ENOG411DQQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os08g0427600 protein A0A0P0XG73 A0A0P0XG73_ORYSJ Os08g0427600 OSNPB_080427600 ENOG411DQQD TMN1 Q940G0 TMN1_ARATH Transmembrane 9 superfamily member 1 (Endomembrane protein 12) (Transmembrane nine protein 1) (AtTMN1) 66893 Transmembrane 9 superfamily member 1 (Endomembrane protein 12) (Transmembrane nine protein 1) (AtTMN1) cis-Golgi network [GO:0005801]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi medial cisterna [GO:0005797]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:20681974}. locus:2197364; AT1G10950 transmembrane 9 superfamily member Transmembrane 9 superfamily member Q2QWZ9,Q2R9Q8,Q6ZI33 Q2QWZ9_ORYSJ,Q2R9Q8_ORYSJ,Q6ZI33_ORYSJ LOC_Os12g07670 Os12g0175700 OsJ_35401 OSNPB_120175700,Os11g0181100 LOC_Os11g07910 Os11g0181100 OsJ_33190 OSNPB_110181100,Os02g0552000 Os02g0552000 OJ1004_H01.22 OSNPB_020552000 ENOG411DQQE PSI1 Q6NQ48 Q6NQ48_ARATH At1g34320 (Ikzf5 (DUF668)) (Uncharacterized protein At1g34320) 72841 At1g34320 (Ikzf5 (DUF668)) (Uncharacterized protein At1g34320) plasma membrane [GO:0005886] locus:2026135; AT1G34320 Domain of unknown function (DUF3475) Os05g0430300 protein (cDNA clone:J033067N19, full insert sequence),Os05g0430300 protein,Os01g0873900 protein Q5TKI6,A0A0P0WMR8,A0A0P0VAZ1 Q5TKI6_ORYSJ,A0A0P0WMR8_ORYSJ,A0A0P0VAZ1_ORYSJ Os05g0430300 Os05g0430300 OSJNBb0048I21.11 OSNPB_050430300,Os05g0430300 OSNPB_050430300,Os01g0873900 OSNPB_010873900 ENOG411DQQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Armadillo/beta-catenin-like repeat NA NA NA NA NA NA NA ENOG411DQQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mpv17 / PMP22 family MpV17 transgene-like (Os01g0228300 protein) Q8W0A7 Q8W0A7_ORYSJ Os01g0228300 Os01g0228300 OsJ_00968 OSNPB_010228300 P0452F10.20 ENOG411DQQH F4HZD1,B9DGQ5 F4HZD1_ARATH,B9DGQ5_ARATH JmjC domain protein JMJ24,AT1G09060 protein (JmjC domain protein JMJ24) R-ATH-3214842;R-ATH-983231; 107230,105591 JmjC domain protein JMJ24,AT1G09060 protein (JmjC domain protein JMJ24) chromatin [GO:0000785]; nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; histone binding [GO:0042393]; histone demethylase activity (H3-K9 specific) [GO:0032454]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; ubiquitin protein ligase activity [GO:0061630]; histone H3-K9 demethylation [GO:0033169]; negative regulation of histone H3-K9 acetylation [GO:2000616]; negative regulation of histone H3-K9 methylation [GO:0051573]; positive regulation of gene expression [GO:0010628]; regulation of transcription, DNA-templated [GO:0006355] locus:2036014; AT1G09060 JmjC JmjC domain containing protein, expressed (Os03g0346700 protein) Q10LJ3 Q10LJ3_ORYSJ Os03g0346700 LOC_Os03g22540 OSNPB_030346700 ENOG411DQQI Q9LEV7 FBT6_ARATH Probable folate-biopterin transporter 6 FUNCTION: Could mediate folate transport. {ECO:0000250}. 55814 Probable folate-biopterin transporter 6 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2183810; AT5G10820 BT1 family Integral membrane transporter-like protein (Os09g0423400 protein) (cDNA clone:J013121C18, full insert sequence) Q69P43 Q69P43_ORYSJ Os09g0423400 OJ1740_D06.42 OSNPB_090423400 P0418B08.13 ENOG411DQQN PNSL4,PnsL4 Q9SCY3,F4JW56 PNSL4_ARATH,F4JW56_ARATH Photosynthetic NDH subunit of lumenal location 4, chloroplastic (FK506-binding protein 16-2) (AtFKBP16-2) (Immunophilin FKBP16-2) (Peptidyl-prolyl cis-trans isomerase FKBP16-2) (PPIase FKBP16-2) (EC 5.2.1.8) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) DISRUPTION PHENOTYPE: RNAi mutant displays impaired NDH activity. {ECO:0000269|PubMed:19903870}. Decreased post-illumination chlorophyll fluorescence-T. Shikanai-2009 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (Probable). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Seems to be essential for stabilizing the NDH subcomplex A (PubMed:19903870). {ECO:0000250, ECO:0000269|PubMed:19903870, ECO:0000305}. 5.2.1.8 23260,19113 Photosynthetic NDH subunit of lumenal location 4, chloroplastic (FK506-binding protein 16-2) (AtFKBP16-2) (Immunophilin FKBP16-2) (Peptidyl-prolyl cis-trans isomerase FKBP16-2) (PPIase FKBP16-2) (EC 5.2.1.8) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077]; transport [GO:0006810],peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2135287; AT4G39710 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q6Z8J5 Q6Z8J5_ORYSJ Os02g0751600 Os02g0751600 OsJ_08405 OSNPB_020751600 P0431B06.35 ENOG411DQQM PIMT2,PIMT1 Q64J17,Q42539,A0A1P8BE80,F4K8W6,A0A1I9LP18,A0A1I9LP19 PIMT2_ARATH,PIMT1_ARATH,A0A1P8BE80_ARATH,F4K8W6_ARATH,A0A1I9LP18_ARATH,A0A1I9LP19_ARATH Protein-L-isoaspartate O-methyltransferase 2 (AtPIMT2) (EC 2.1.1.77),Protein-L-isoaspartate O-methyltransferase 1 (AtPIMT1) (EC 2.1.1.77) (L-isoaspartyl protein carboxyl methyltransferase) (Protein L-isoaspartyl methyltransferase) (Protein-beta-aspartate methyltransferase),Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) Higher PIMT protein levels in dry seeds as compared to WT. Seeds are more resistant to aging than WT. Mutant plants are morphologically similar to WT. FUNCTION: Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. {ECO:0000269|PubMed:15347786, ECO:0000269|PubMed:21076691}.,FUNCTION: Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Contributes to seed longevity and germination vigor by limiting the abnormal accumulation of the L-isoaspartyl residues in seed proteins. {ECO:0000269|PubMed:15347786, ECO:0000269|PubMed:19011119, ECO:0000269|PubMed:21076691}. MISCELLANEOUS: Seeds over-expressing PIMT1 have reduced accumulation of L-isoaspartyl residues in seed proteins and increased seed longevity and germination vigor. Conversely, reduced PIMT1 expression is associated with an increase in the accumulation of L-isoaspartyl residues in proteins, leading to increased sensitivity to aging treatments and loss of seed vigor under stressful germination conditions (PubMed:19011119). {ECO:0000305|PubMed:19011119}. R-ATH-5676934; 2.1.1.77; 2.1.1.77 33986,24614,17471,23159,30424,22866 Protein-L-isoaspartate O-methyltransferase 2 (AtPIMT2) (EC 2.1.1.77),Protein-L-isoaspartate O-methyltransferase 1 (AtPIMT1) (EC 2.1.1.77) (L-isoaspartyl protein carboxyl methyltransferase) (Protein L-isoaspartyl methyltransferase) (Protein-beta-aspartate methyltransferase),Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [GO:0004719]; protein repair [GO:0030091],cytoplasm [GO:0005737]; cytosol [GO:0005829]; protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [GO:0004719]; aging [GO:0007568]; protein repair [GO:0030091]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; seed germination [GO:0009845],protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [GO:0004719] TISSUE SPECIFICITY: Expressed in rosette leaves, stems, cauline leaves, flowers and developing seeds. {ECO:0000269|PubMed:15347786}.,TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, cauline leaves, flowers and developing seeds. {ECO:0000269|PubMed:15347786, ECO:0000269|PubMed:8624405}. locus:2157767;,locus:504955645; AT5G50240,AT3G48330 Protein-l-isoaspartate O-methyltransferase Os04g0481400 protein (cDNA clone:001-128-A09, full insert sequence),L-isoaspartate methyltransferase (Os08g0557000 protein) (cDNA clone:006-209-F04, full insert sequence) (cDNA clone:J023099B17, full insert sequence) Q0JCB3,Q6ZJ17 Q0JCB3_ORYSJ,Q6ZJ17_ORYSJ Os04g0481400 Os04g0481400 OSNPB_040481400,PIMT1 Os08g0557000 OJ1150_A11.18 OSNPB_080557000 ENOG411DQQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RecF/RecN/SMC N terminal domain Os02g0133400 protein (Fragment),Os02g0133300 protein (Fragment) A0A0P0VEI6,A0A0N7KEM6 A0A0P0VEI6_ORYSJ,A0A0N7KEM6_ORYSJ Os02g0133400 OSNPB_020133400,Os02g0133300 OSNPB_020133300 ENOG411DQQS ECT10 Q8VYH3,F4KDJ9 Q8VYH3_ARATH,F4KDJ9_ARATH At5g58190/At5g58190 (Evolutionarily conserved C-terminal region 10),Evolutionarily conserved C-terminal region 10 58342,58470 At5g58190/At5g58190 (Evolutionarily conserved C-terminal region 10),Evolutionarily conserved C-terminal region 10 RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:2161213; AT5G58190 YT521-B-like domain NA NA NA NA NA NA NA ENOG411DQQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl CoA binding protein Acyl-CoA-binding domain-containing protein 5 (Acyl-CoA binding protein 5) (OsACBP5) Q10P83 ACBP5_ORYSJ ACBP5 Os03g0243600 LOC_Os03g14000 OsJ_10106 FUNCTION: Binds medium- and long-chain acyl-CoA esters with high affinity. Can interact in vitro with palmitoyl-CoA and linolenoyl-CoA (PubMed:21128943). Binds phosphatidic acid (PA) and phosphatidylcholine (PC) in vitro. May play a role in the biosynthesis of phospholipids (PubMed:24738983). {ECO:0000269|PubMed:21128943, ECO:0000269|PubMed:24738983}. ENOG411DQQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 OSJNBb0003B01.5 protein (OSJNBb0034I13.25 protein) (Os04g0638800 protein) (cDNA clone:J023050M24, full insert sequence) (cDNA clone:J023110I06, full insert sequence) Q7X8Y3 Q7X8Y3_ORYSJ Os04g0638800 OSJNBb0003B01.5 OSJNBb0034I13.25 OSNPB_040638800 ENOG411DQQW GRF12,GRF10,GRF11 Q9C5W6,P48347,Q9S9Z8,F4I1B7,F4I1C1,F4I1B8 14312_ARATH,14310_ARATH,14311_ARATH,F4I1B7_ARATH,F4I1C1_ARATH,F4I1B8_ARATH 14-3-3-like protein GF14 iota (General regulatory factor 12),14-3-3-like protein GF14 epsilon (General regulatory factor 10),14-3-3-like protein GF14 omicron (General regulatory factor 11),14-3-3 family protein,General regulatory factor 10 FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. {ECO:0000250}.,FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. R-ATH-1445148;R-ATH-3371453;R-ATH-3371511; 30545,28915,28781,24880,28568,22407 14-3-3-like protein GF14 iota (General regulatory factor 12),14-3-3-like protein GF14 epsilon (General regulatory factor 10),14-3-3-like protein GF14 omicron (General regulatory factor 11),14-3-3 family protein,General regulatory factor 10 cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein domain specific binding [GO:0019904],cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein domain specific binding [GO:0019904]; brassinosteroid mediated signaling pathway [GO:0009742]; response to abscisic acid [GO:0009737],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATPase binding [GO:0051117]; protein domain specific binding [GO:0019904],protein domain specific binding [GO:0019904] locus:2197940;,locus:2196506;,locus:2008381;,locus:2196511; AT1G26480,AT1G22300,AT1G34760,AT1G22290 14-3-3-like protein 14-3-3-like protein GF14-G (G-box factor 14-3-3 homolog G) Q5QNB8 14337_ORYSJ GF14G Os01g0209200 LOC_Os01g11110 OSJNBa0016I09.32 FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. {ECO:0000250}. ENOG411DQQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD repeat-containing protein Os05g0299300 protein A0A0P0WKE0 A0A0P0WKE0_ORYSJ Os05g0299300 OSNPB_050299300 ENOG411DQQU Q9SUC0,A0A1P8B7M5 3HIDH_ARATH,A0A1P8B7M5_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial (HIBADH) (EC 1.1.1.31),6-phosphogluconate dehydrogenase family protein PATHWAY: Amino-acid degradation; L-valine degradation. ARA:AT4G20930-MONOMER; R-ATH-70895; 1.1.1.31 37365,29288 Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial (HIBADH) (EC 1.1.1.31),6-phosphogluconate dehydrogenase family protein mitochondrion [GO:0005739]; 3-hydroxyisobutyrate dehydrogenase activity [GO:0008442]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; valine catabolic process [GO:0006574],3-hydroxyisobutyrate dehydrogenase activity [GO:0008442]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616] locus:2133134; AT4G20930 3-hydroxyisobutyrate dehydrogenase 3-hydroxyisobutyrate dehydrogenase (HIBADH) (EC 1.1.1.31),Os06g0677400 protein Q653U8,A0A0P0X0F9 Q653U8_ORYSJ,A0A0P0X0F9_ORYSJ B1153E06.20-1 P0710B08.14-1 Os06g0677400 OSNPB_060677400,Os06g0677400 OSNPB_060677400 ENOG411DQQZ AS1 O80931 AS1_ARATH Transcription factor AS1 (Myb-related protein 91) (AtMYB91) (Protein ASYMMETRIC LEAVES 1) (Protein PHANTASTICA) (AtPHAN) asymmetric and lobed rosette leaves leaf edges slightly curled under somewhat triangular-shaped leaves.,No defects were observed in the dehiscence of as1-1 siliques.,The mutant displayed slightly altered siliques with a moderate bumpy appearance. A closer inspection of these fruits showed that they had developed enlarged repla with more cells than those of the wild type.,The number of outer epidermal cells in mutant valves was smaller causing a reduction in valve width.,The alteration produced in fruits by the as1 mutation was partially alleviated in the double mutants. Repla were narrow practically reverting to the appearance of the wild type and numbers of cells in both repla and valves were different from those of the as1 mutants.,Partial rescue of the rpl repla phenotype.,Showed large repla and a reduction in valve width.,Double mutant displayed extremely small valves and very large rough and distorted repla indicating a strong enhancement of the phenotypes of the two single mutants both in valves and replum.,Leaf phenotypes are enhanced with respect to either single mutant with deeply lobed margins and ectopic stipules present in the sinus of each lobe.,Ectopic stipules observed in cauline leaves of as1;axr1 plants are not found. Leaves have an as1-like morphology.,Mutant leaf petioles displayed clusters of densely cytoplasmic undifferentiated cells on the adaxial side coincident with the development of ectopic outgrowths.,The rosette leaf petioles of the triple mutant plants showed extensive ectopic outgrowth formation in the marginal region and some outgrowths exhibited a strongly radialized character.,The vascular patterning defects in the triple mutant leaf petioles were greatly enhanced compared with those of the parental plants.,Abnormal leaves. Leaves are pin-like or lotus-like. Altered leaf morphology-H. Huang-2002 FUNCTION: Transcription factor required for normal cell differentiation. Positively regulates LATERAL ORGAN BOUNDARIES (LOB) within the shoot apex, and the class III HD-ZIP genes REV, PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 2 (LBD6/AS2) to repress the knox homeobox genes BP/KNAT1, KNAT2, and KNAT6 and the abaxial determinants ARF3/ETT, KAN2 and YAB5. May act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA silencing pathway, to regulate the leaf morphogenesis (PubMed:11076771, PubMed:11140682, PubMed:11882937, PubMed:12750468, PubMed:16006579, PubMed:16699177, PubMed:17395603, PubMed:17559509, PubMed:23271976). Binds directly to KNAT1, KNAT2, and KNATM chromatin, regulating leaf development (PubMed:23271976). LBD6 is required for this binding (PubMed:23271976). Positive regulator of flowering that binds to the promoter of FT (PubMed:21950734). Regulates FT expression by forming a functional complex with CO (PubMed:21950734). Involved in leaf polarity establishment by functioning cooperatively with NUCL1 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures (PubMed:27334696). {ECO:0000269|PubMed:11076771, ECO:0000269|PubMed:11140682, ECO:0000269|PubMed:11882937, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:16006579, ECO:0000269|PubMed:16699177, ECO:0000269|PubMed:17395603, ECO:0000269|PubMed:17559509, ECO:0000269|PubMed:23271976, ECO:0000269|PubMed:27334696}. 42243 Transcription factor AS1 (Myb-related protein 91) (AtMYB91) (Protein ASYMMETRIC LEAVES 1) (Protein PHANTASTICA) (AtPHAN) condensed chromosome [GO:0000793]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein homodimerization activity [GO:0042803]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; asymmetric cell division [GO:0008356]; cell differentiation [GO:0030154]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; flower development [GO:0009908]; leaf formation [GO:0010338]; leaf morphogenesis [GO:0009965]; negative regulation of transcription, DNA-templated [GO:0045892]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of innate immune response [GO:0045088]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to virus [GO:0009615]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Preferential expression in young and immature plant tissues. In embryos, expressed from the late globular stage onwards. After germination, detected in leaf founder cells and on flowering, in primordia of all floral organs. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and in lateral organ promordia (PubMed:17559509). Found in the inner domain between the adaxial and abaxial domains of leaves (PubMed:17559509). Expressed in the phloem tissues of leaves, cotyledons, hypocotyls, and roots (PubMed:21950734). {ECO:0000269|PubMed:17559509, ECO:0000269|PubMed:21950734}. locus:2040671; AT2G37630 Transcription factor Protein rough sheath 2 homolog (OsPHAN) (OsRS2) (Protein PHANTASTICA homolog),Os12g0572000 protein Q94IB1,A0A0P0YCP8 RS2_ORYSJ,A0A0P0YCP8_ORYSJ RS2 Os12g0572000 LOC_Os12g38400,Os12g0572000 OSNPB_120572000 FUNCTION: Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}. ENOG411DQQX Q9XIG2 Q9XIG2_ARATH At1g43580/T10P12_6 (Sphingomyelin synthetase family protein) (T10P12.6 protein) 47120 At1g43580/T10P12_6 (Sphingomyelin synthetase family protein) (T10P12.6 protein) integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of Golgi membrane [GO:0030173]; integral component of plasma membrane [GO:0005887]; plasmodesma [GO:0009506]; ceramide cholinephosphotransferase activity [GO:0047493]; sphingomyelin synthase activity [GO:0033188]; ceramide biosynthetic process [GO:0046513] locus:2194671; AT1G43580 Inherit from KOG: sphingomyelin synthase OSJNBa0035I04.2 protein (OSJNBb0088C09.12 protein) (Os04g0423700 protein),Os02g0543100 protein Q7X8A2,A0A0N7KFG1 Q7X8A2_ORYSJ,A0A0N7KFG1_ORYSJ OSJNBa0035I04.2 Os04g0423700 OSJNBb0088C09.12 OSNPB_040423700,Os02g0543100 OSNPB_020543100 ENOG411DQQY F4I6E4,Q8L7S7,F4I2K0,F4IVD6,A1L4V1,Q1PF34,Q6NLP5,Q9LW66,A0A1P8B8F5,A0A1P8B8F2,A0A1P8B233,A0A1P8AQX9,A0A1P8AWP3,A0A1P8B2C0,A8MR48 F4I6E4_ARATH,Q8L7S7_ARATH,F4I2K0_ARATH,F4IVD6_ARATH,A1L4V1_ARATH,Q1PF34_ARATH,Q6NLP5_ARATH,Q9LW66_ARATH,A0A1P8B8F5_ARATH,A0A1P8B8F2_ARATH,A0A1P8B233_ARATH,A0A1P8AQX9_ARATH,A0A1P8AWP3_ARATH,A0A1P8B2C0_ARATH,A8MR48_ARATH Protein kinase family protein,AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (AT4g14350/dl3215c),Ypt/Rab-GAP domain of gyp1p superfamily protein,At4g28550 (Ypt/Rab-GAP domain of gyp1p superfamily protein),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (Protein kinase),At2g20440 (Uncharacterized protein At2g20440) (Ypt/Rab-GAP domain of gyp1p superfamily protein),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (Protein kinase) (Uncharacterized protein At3g23310),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein R-ATH-8854214; 64911,63180,65029,49362,49114,64843,35724,65323,40058,38584,41705,54279,52381,60991,63084 Protein kinase family protein,AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (AT4g14350/dl3215c),Ypt/Rab-GAP domain of gyp1p superfamily protein,At4g28550 (Ypt/Rab-GAP domain of gyp1p superfamily protein),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (Protein kinase),At2g20440 (Uncharacterized protein At2g20440) (Ypt/Rab-GAP domain of gyp1p superfamily protein),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (Protein kinase) (Uncharacterized protein At3g23310),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein intracellular [GO:0005622]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105],cytoplasm [GO:0005737]; cytosol [GO:0005829]; intracellular [GO:0005622]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105],cytosol [GO:0005829]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105],endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338],integral component of membrane [GO:0016021],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2204574;,locus:2129650;,locus:2024167;,locus:2038922;,locus:2121353;,locus:2054784;,locus:2090925; AT1G30640,AT4G14350,AT1G03920,AT2G20440,AT4G28550,AT2G20470,AT3G23310 serine threonine-protein kinase Non-specific serine/threonine protein kinase (EC 2.7.11.1),Os12g0290100 protein Q9AUZ4,Q6L535,A0A0P0Y950,A0A0P0Y980 Q9AUZ4_ORYSJ,Q6L535_ORYSJ,A0A0P0Y950_ORYSJ,A0A0P0Y980_ORYSJ Os10g0476100 LOC_Os10g33640 OsJ_31879 OSJNBa0026O12.14 OSJNBb0044B19.9 OSNPB_100476100,Os05g0511400 OJ1005_B11.10 OSNPB_050511400,Os12g0290100 OSNPB_120290100 ENOG411DQQ2 ING2 B3H615,F4HWW5,Q8LE83,F4HWW1 ING2_ARATH,F4HWW5_ARATH,Q8LE83_ARATH,F4HWW1_ARATH PHD finger protein ING2 (Protein INHIBITOR OF GROWTH 2) (Protein AtING2),PHD finger protein ING,PHD finger protein-like protein FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. 30123,27913,20969,37039 PHD finger protein ING2 (Protein INHIBITOR OF GROWTH 2) (Protein AtING2),PHD finger protein ING,PHD finger protein-like protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; covalent chromatin modification [GO:0016569]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; covalent chromatin modification [GO:0016569],nucleus [GO:0005634]; methylated histone binding [GO:0035064] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19154204}. locus:2020063; AT1G54390 inhibitor of growth protein PHD finger protein ING Q10CW4 Q10CW4_ORYSJ Os03g0748200 LOC_Os03g53700 Os03g0748200 OSNPB_030748200 ENOG411DQQ3 BIG2,BIG3 Q9LZX8,Q9LPC5 BIG2_ARATH,BIG3_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (BIG2) (ARF guanine-nucleotide exchange factor BIG2),Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) (ARF guanine-nucleotide exchange factor BIG3) (Protein EMBRYO SAC DEVELOPMENT ARREST 10) DISRUPTION PHENOTYPE: Abnormal nuclear numbers and positions. No embryo sac. {ECO:0000269|PubMed:15634699}. FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting (By similarity). {ECO:0000250}.,FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting (By similarity). Involved both in the nuclear division phase and in the nuclear fusion phase. {ECO:0000250, ECO:0000269|PubMed:15634699}. 199632,194943 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (BIG2) (ARF guanine-nucleotide exchange factor BIG2),Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) (ARF guanine-nucleotide exchange factor BIG3) (Protein EMBRYO SAC DEVELOPMENT ARREST 10) cytosol [GO:0005829]; membrane [GO:0016020]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012],cytosol [GO:0005829]; nucleus [GO:0005634]; trans-Golgi network membrane [GO:0032588]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; megagametogenesis [GO:0009561]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012]; vesicle-mediated transport [GO:0016192] locus:2101906;,locus:2025502; AT3G60860,AT1G01960 Brefeldin A-inhibited guanine nucleotide-exchange protein Os03g0246800 protein (Fragment),Os03g0246800 protein A0A0P0VVF6,A0A0P0VVD8,A0A0N7KGX7,A0A0P0VVE7 A0A0P0VVF6_ORYSJ,A0A0P0VVD8_ORYSJ,A0A0N7KGX7_ORYSJ,A0A0P0VVE7_ORYSJ Os03g0246800 OSNPB_030246800 ENOG411DQQ0 F4ILR7,A0A1P8AXT2,A0A1P8AXM2 DEXH1_ARATH,A0A1P8AXT2_ARATH,A0A1P8AXM2_ARATH DExH-box ATP-dependent RNA helicase DExH1 (EC 3.6.4.13),RNA helicase family protein R-ATH-3134963; 3.6.4.13 111039,104954,114646 DExH-box ATP-dependent RNA helicase DExH1 (EC 3.6.4.13),RNA helicase family protein mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA processing [GO:0006396],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2039280; AT2G35920 ATP-dependent RNA helicase NA NA NA NA NA NA NA ENOG411DQQ1 FTSHI3 Q9M895 FTSI3_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic (AtFTSHI3) (Protein FTSH INACTIVE PROTEASE 3) DISRUPTION PHENOTYPE: Embryo defective. {ECO:0000269|PubMed:24964212}. FUNCTION: Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex. {ECO:0000303|PubMed:12185496}. 69410 Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic (AtFTSHI3) (Protein FTSH INACTIVE PROTEASE 3) chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; zinc ion binding [GO:0008270]; proteolysis [GO:0006508] locus:2076929; AT3G02450 ATPase family associated with various cellular activities (AAA) Os04g0466100 protein (Fragment),Os02g0149050 protein Q0JCJ2,A0A0P0VF04 Q0JCJ2_ORYSJ,A0A0P0VF04_ORYSJ Os04g0466100 Os04g0466100 OSNPB_040466100,Os02g0149050 OSNPB_020149050 ENOG411DQQ6 LFR Q9LS90 LFR_ARATH Armadillo repeat-containing protein LFR (Protein LEAF AND FLOWER RELATED) DISRUPTION PHENOTYPE: Developmental and morphological defects at the vegetative stage in cotyledons and true leaves, and during the reproductive phase in flowers and siliques. Increased abortive frequency of embryos. {ECO:0000269|PubMed:18846319}. Abnormal cotyledon vascular pattern. Slow-growing. Leaves are shorter and narrower than WT. Increased number of petals. Petals are curled downward. Fewer stamens. Short siliques containing fewer seeds than WT. Upward-bending cotyledons and young leaves; Slow growth; Small rosette; Short, narrow leaves with long petioles; Downward-curling petals; Abnormal floral organ number; Short filaments; Reduced fertility; Abnormal cotyledon vasculature-S. Cui-2008 FUNCTION: Involved in leaf and flower development (PubMed:18846319). Required for the formation of anther cell layers and normal expression of genes that regulates anther development (PubMed:22461668). {ECO:0000269|PubMed:18846319, ECO:0000269|PubMed:22461668}. 50112 Armadillo repeat-containing protein LFR (Protein LEAF AND FLOWER RELATED) BAF-type complex [GO:0090544]; nucleus [GO:0005634]; anther development [GO:0048653]; chromatin remodeling [GO:0006338]; flower development [GO:0009908]; leaf development [GO:0048366]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:18846319}. locus:2094618; AT3G22990 NA Os07g0609766 protein A0A0P0X8P5 A0A0P0X8P5_ORYSJ Os07g0609766 OSNPB_070609766 ENOG411DQQ7 HIR1,HIR4,HIR2 Q9FM19,Q9FHM7,Q9CAR7 HIR1_ARATH,HIR4_ARATH,HIR2_ARATH Hypersensitive-induced response protein 1 (AtHIR1),Hypersensitive-induced response protein 4 (AtHIR4),Hypersensitive-induced response protein 2 (AtHIR2) FUNCTION: Positive regulator of hypersensitive response (HR)-like cell death. May be involved in potassium ion channel regulation. {ECO:0000250|UniProtKB:Q5GI04}. 31431,32378,31406 Hypersensitive-induced response protein 1 (AtHIR1),Hypersensitive-induced response protein 4 (AtHIR4),Hypersensitive-induced response protein 2 (AtHIR2) Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; protein histidine kinase binding [GO:0043424],Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773],chloroplast [GO:0009507]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; protein histidine kinase binding [GO:0043424] locus:2170698;,locus:2153117;,locus:2196749; AT5G62740,AT5G51570,AT1G69840 hypersensitive-induced response protein Hypersensitive-induced response protein 1 (OsHIR1),Hypersensitive-induced response protein-like protein 2,Hypersensitive-induced response protein-like protein 1,Os01g0588100 protein (Putative hypersensitive-induced response protein),Os06g0136000 protein (Putative hypersensitive-induced reaction protein 4) (cDNA clone:001-007-A02, full insert sequence) (cDNA clone:J033102H16, full insert sequence),Os05g0591900 protein (Fragment),Os06g0135000 protein (Fragment) Q6ZIV7,Q6K550,Q6L4S3,Q8S1F1,Q5VNU2,A0A0P0WR49,A0A0P0WSM7 HIR1_ORYSJ,HIRL2_ORYSJ,HIRL1_ORYSJ,Q8S1F1_ORYSJ,Q5VNU2_ORYSJ,A0A0P0WR49_ORYSJ,A0A0P0WSM7_ORYSJ HIR1 Os08g0398400 LOC_Os08g30790 OJ1051_A08.5 OJ1198_B10.17 OsJ_27208 OSNPB_080398400,HIRL2 Os09g0361200 OSNPB_090361200 P0711F01.54,HIRL1 Os05g0591900 OsJ_19752 OSNPB_050591900 P0663C08.5,P0700A11.19 Os01g0588100 OSNPB_010588100,Os06g0136000 OsJ_20038 OSNPB_060136000 P0001H02.28 P0548D03.13,Os05g0591900 OSNPB_050591900,Os06g0135000 OSNPB_060135000 FUNCTION: Positive regulator of hypersensitive response (HR)-like cell death. May be involved in potassium ion channel regulation. {ECO:0000250|UniProtKB:Q5GI04}. ENOG411DQQ4 LIP1 Q9ZWT1 LIAS_ARATH Lipoyl synthase, mitochondrial (EC 2.8.1.8) (Lipoate synthase) (LS) (Lip-syn) (Lipoic acid synthase) FUNCTION: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. {ECO:0000255|HAMAP-Rule:MF_03128, ECO:0000269|PubMed:9808738}. PATHWAY: Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 2/2. {ECO:0000255|HAMAP-Rule:MF_03128}. 2.8.1.8; 2.8.1.8 41344 Lipoyl synthase, mitochondrial (EC 2.8.1.8) (Lipoate synthase) (LS) (Lip-syn) (Lipoic acid synthase) mitochondrial matrix [GO:0005759]; 4 iron, 4 sulfur cluster binding [GO:0051539]; lipoate synthase activity [GO:0016992]; metal ion binding [GO:0046872]; glycine catabolic process [GO:0006546]; protein lipoylation [GO:0009249] TISSUE SPECIFICITY: Expressed in leaves and flowers, but not in roots. {ECO:0000269|PubMed:9808738}. locus:2051384; AT2G20860 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes thereby converting the octanoylated domains into lipoylated derivatives Lipoyl synthase, mitochondrial (EC 2.8.1.8) (Lipoate synthase) (LS) (Lip-syn) (Lipoic acid synthase) Q7XRF1 LIAS_ORYSJ LIP1 Os04g0455800 LOC_Os04g38330 OsJ_15022 OSJNBa0006M15.16 FUNCTION: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. {ECO:0000255|HAMAP-Rule:MF_03128}. ENOG411DQQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os07g0183866 protein A0A0P0X366 A0A0P0X366_ORYSJ Os07g0183866 OSNPB_070183866 ENOG411DQQ8 F4K946 F4K946_ARATH Protein kinase superfamily protein R-ATH-446652; 119245 Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:504954886; AT5G56890 receptor-like serine threonine-protein kinase ALE2-like Os01g0709500 protein (Protein kinase CDG1-like) (cDNA clone:J023075E10, full insert sequence),Os01g0195200 protein (Fragment),Os01g0709500 protein (Fragment),Os01g0709500 protein Q5NAH9,Q0JPX5,A0A0P0V771,A0A0P0V7E9,A0A0P0V779 Q5NAH9_ORYSJ,Q0JPX5_ORYSJ,A0A0P0V771_ORYSJ,A0A0P0V7E9_ORYSJ,A0A0P0V779_ORYSJ P0456F08.11-1 Os01g0709500 OSNPB_010709500,Os01g0195200 Os01g0195200 OSNPB_010195200,Os01g0709500 OSNPB_010709500 ENOG411DQQ9 Q9ZW88 FBL34_ARATH F-box/LRR-repeat protein At1g67190 47732 F-box/LRR-repeat protein At1g67190 locus:2033696; AT1G67190 F-box LRR-repeat protein F-box protein-like (Os01g0859600 protein) (cDNA clone:J013132O07, full insert sequence) Q8RZ32 Q8RZ32_ORYSJ Os01g0859600 OsJ_04145 OSNPB_010859600 P0489B03.15 P0679C12.5 ENOG411E7BG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 NA NA NA NA NA NA NA ENOG411EJ65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nucleolar MIF4G domain-containing protein 1-like NA NA NA NA NA NA NA ENOG411E99V DTX36,DTX37 Q9SAB0,O80695,A0A1P8ART6,A0A1P8ARS2 DTX36_ARATH,DTX37_ARATH,A0A1P8ART6_ARATH,A0A1P8ARS2_ARATH Protein DETOXIFICATION 36 (AtDTX36) (Multidrug and toxic compound extrusion protein 36) (MATE protein 36),Protein DETOXIFICATION 37 (AtDTX37) (Multidrug and toxic compound extrusion protein 37) (MATE protein 37),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) R-ATH-425366; 54995,55134,51991,54390 Protein DETOXIFICATION 36 (AtDTX36) (Multidrug and toxic compound extrusion protein 36) (MATE protein 36),Protein DETOXIFICATION 37 (AtDTX37) (Multidrug and toxic compound extrusion protein 37) (MATE protein 37),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855]; response to karrikin [GO:0080167],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2027322;,locus:2036848; AT1G11670,AT1G61890 Mate efflux family protein NA NA NA NA NA NA NA ENOG411E99Q B3H5R0,Q5XV99,A0A1I9LRA6 GLYT8_ARATH,GLYT7_ARATH,A0A1I9LRA6_ARATH Glycosyltransferase-like At2g41451 (EC 2.4.1.-),Glycosyltransferase-like At3g57200,Glycosyltransferase-like protein FUNCTION: Involved in the coordination between cell elongation and cellulose synthesis by promoting the expression of genes involved in cell elongation and cellulose synthesis. Acts as a regulator of plasmodesmatal permeability. Maybe a glycosyltransferase. {ECO:0000250|UniProtKB:Q9C9Z9}. 2.4.1.- 52259,58424,51352 Glycosyltransferase-like At2g41451 (EC 2.4.1.-),Glycosyltransferase-like At3g57200,Glycosyltransferase-like protein cytoplasm [GO:0005737]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; transferase activity, transferring glycosyl groups [GO:0016757]; cell cycle [GO:0007049]; cell differentiation [GO:0030154]; cell division [GO:0051301]; cell wall organization [GO:0071555]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008],transferase activity [GO:0016740] locus:4515102980;,locus:2082573; AT2G41451,AT3G57200 NA NA NA NA NA NA NA NA ENOG411E2D9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0555300 protein (Fragment),Os07g0554100 protein (Fragment) A0A0P0X7J4,A0A0N7KNN3,A0A0P0X7V3 A0A0P0X7J4_ORYSJ,A0A0N7KNN3_ORYSJ,A0A0P0X7V3_ORYSJ Os07g0555300 OSNPB_070555300,Os07g0554100 OSNPB_070554100 ENOG411E2D8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-binding protein ABP19a-like Os04g0288100 protein A0A0P0W8K1 A0A0P0W8K1_ORYSJ Os04g0288100 OSNPB_040288100 ENOG411E2D1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0488050 protein A0A0P0WX42 A0A0P0WX42_ORYSJ Os06g0488050 OSNPB_060488050 ENOG411E2D0 Q5XEN3,Q0WRX7 Q5XEN3_ARATH,Q0WRX7_ARATH ATPase complex subunit (At1g08220),ATPase complex subunit (Uncharacterized protein At1g08220) 22671,31058 ATPase complex subunit (At1g08220),ATPase complex subunit (Uncharacterized protein At1g08220) integral component of mitochondrial membrane [GO:0032592]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; mitochondrial proton-transporting ATP synthase complex assembly [GO:0033615] locus:2200028; AT1G08220 ATP10 protein Os05g0176500 protein (cDNA clone:006-207-D10, full insert sequence) (cDNA clone:J033029L21, full insert sequence) Q6AT24 Q6AT24_ORYSJ Os05g0176500 OsJ_17313 OSJNBa0029B02.5 OSNPB_050176500 ENOG411E2D3 VRN1 Q8L3W1,A0A1I9LQ83 VRN1_ARATH,A0A1I9LQ83_ARATH B3 domain-containing transcription factor VRN1 (Protein VERNALIZATION 1),AP2/B3-like transcriptional factor family protein In the absence of vernalization the double mutant flowered at the same time as the fca-1 single mutant.,No delay in flowering but reduction in vernalization response.,Strong delay in flowering and vernalization response. Reduced vernalization response-C. Dean-2002 FUNCTION: Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. 39275,42516 B3 domain-containing transcription factor VRN1 (Protein VERNALIZATION 1),AP2/B3-like transcriptional factor family protein nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. locus:2085849; AT3G18990 B3 domain-containing transcription factor NA NA NA NA NA NA NA ENOG411E2D2 T9C5.140 Q9SCK4,Q9FLU3 Q9SCK4_ARATH,Q9FLU3_ARATH At3g49550 (Uncharacterized protein At3g49550) (Uncharacterized protein T9C5.140),At5g24610 (Cyclic AMP-responsive element-binding protein) (Emb|CAB62459.1) (Uncharacterized protein At5g24610) 16477,16264 At3g49550 (Uncharacterized protein At3g49550) (Uncharacterized protein T9C5.140),At5g24610 (Cyclic AMP-responsive element-binding protein) (Emb|CAB62459.1) (Uncharacterized protein At5g24610) locus:2114708;,locus:2153919; AT3G49550,AT5G24610 NA Expressed protein (Os10g0509100 protein) (cDNA clone:J013120I12, full insert sequence) (cDNA clone:J023007G19, full insert sequence) Q337D0 Q337D0_ORYSJ Os10g0509100 LOC_Os10g36550 OsJ_32116 OSNPB_100509100 ENOG411E2D5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA strictosidine synthase NA NA NA NA NA NA NA ENOG411E2D4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Os07g0593000 protein (cDNA clone:001-111-H03, full insert sequence) Q84RX1 Q84RX1_ORYSJ OJ1710_H11.113 Os07g0593000 OsJ_24964 OSNPB_070593000 ENOG411E2D7 PUX9 Q4V3D3 PUX9_ARATH Plant UBX domain-containing protein 9 (PUX9) 52136 Plant UBX domain-containing protein 9 (PUX9) locus:504955540; AT4G00752 UBX domain-containing protein NA NA NA NA NA NA NA ENOG411E2D6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os08g0475000 protein (Fragment) A0A0P0XH29 A0A0P0XH29_ORYSJ Os08g0475000 OSNPB_080475000 ENOG411E99I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metallo-beta-lactamase superfamily NA NA NA NA NA NA NA ENOG411E99H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411E2DY PCMP-E56 P0C7R0 PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415, mitochondrial 85017 Pentatricopeptide repeat-containing protein At1g32415, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:505006163; AT1G32415 PPR repeat NA NA NA NA NA NA NA ENOG411E2DX Q9SW05 Q9SW05_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Putative pathogenesis-related protein) 21381 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Putative pathogenesis-related protein) extracellular region [GO:0005576] locus:2117537; AT4G25780 Pathogenesis-related protein Os02g0786900 protein (cDNA clone:001-128-D06, full insert sequence) Q0DWY7 Q0DWY7_ORYSJ Os02g0786900 Os02g0786900 OSNPB_020786900 ENOG411E2DZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:LACT Lecithin:cholesterol acyltransferase family protein, expressed (Os10g0163370 protein) (cDNA clone:006-209-F05, full insert sequence),Os10g0163400 protein,Os10g0163310 protein (Fragment) Q10A29,Q94HP4,A0A0P0XS28 Q10A29_ORYSJ,Q94HP4_ORYSJ,A0A0P0XS28_ORYSJ Os10g0163370 LOC_Os10g08026 OsJ_30818 OSNPB_100163370,OSJNBa0089D15.4 Os10g0163400 OSNPB_100163400,Os10g0163310 OSNPB_100163310 ENOG411E2DQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0256300 protein A0A0P0X4J6 A0A0P0X4J6_ORYSJ Os07g0256300 OSNPB_070256300 ENOG411E2DP RAD52-1 Q9FVV7,F4I8H5 RD521_ARATH,F4I8H5_ARATH DNA repair RAD52-like protein 1, mitochondrial (Organellar DNA-binding protein 1),Cobalt ion binding protein DISRUPTION PHENOTYPE: Reduced fertility, increased sensitivity to mitomycin C, and decreased levels of intrachromosomal recombination. {ECO:0000269|PubMed:26048959}. FUNCTION: Plant-specific single-stranded DNA-binding protein required for efficient heterologous recombination-dependent DNA repair in nuclear and mitochondrial compartments. Forms large nucleo-protein complexes with WHY2 in mitochondria. Binds ssDNA with high affinity, but with little sequence specificity (PubMed:22762281). Involved in double-stranded DNA break repair (PubMed:22202891). Involved in the hydrolytic splicing pathway in mitochondrion. Facilitates the excision of two cis-spliced group II introns, NAD1 intron 2 and NAD2 intron 1 (PubMed:26048959). {ECO:0000269|PubMed:22202891, ECO:0000269|PubMed:22762281, ECO:0000269|PubMed:26048959}. 19484,18591 DNA repair RAD52-like protein 1, mitochondrial (Organellar DNA-binding protein 1),Cobalt ion binding protein mitochondrion [GO:0005739]; nucleus [GO:0005634]; cobalt ion binding [GO:0050897]; double-stranded DNA binding [GO:0003690]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281]; double-strand break repair via homologous recombination [GO:0000724]; Group II intron splicing [GO:0000373] TISSUE SPECIFICITY: Expressed in root vascular tissue, tips of primary and secondary roots, young leaves, hydathodes, stomatal guard cells, cauline leaves, flower buds, stipules, carpels, pistils and anther filaments. {ECO:0000269|PubMed:22762281}. locus:2032313; AT1G71310 SnRK1-interacting protein 1 NA NA NA NA NA NA NA ENOG411E2DS QWRF3 Q8S8I1,A0A1P8B141,A0A1P8B132,F4IVH3 QWRF3_ARATH,A0A1P8B141_ARATH,A0A1P8B132_ARATH,F4IVH3_ARATH QWRF motif-containing protein 3,QWRF motif protein (DUF566) 54298,46036,54426,23993 QWRF motif-containing protein 3,QWRF motif protein (DUF566) locus:505006260;,locus:2827368; AT2G20815,AT2G20616 Family of unknown function (DUF566) Os03g0581500 protein A0A0P0VZI5 A0A0P0VZI5_ORYSJ Os03g0581500 OSNPB_030581500 ENOG411E2DR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E2DU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0246300 protein (Putative Pi-b protein),Os06g0575900 protein,Os04g0205200 protein Q6Z632,A0A0P0WY85,A0A0P0W780 Q6Z632_ORYSJ,A0A0P0WY85_ORYSJ,A0A0P0W780_ORYSJ Os08g0246300 Os08g0246300 OSJNBa0049G15.7 OSNPB_080246300,Os06g0575900 OSNPB_060575900,Os04g0205200 OSNPB_040205200 ENOG411E2DT F4I394,F4IHC4,F4JA83,F4I1M8 F4I394_ARATH,F4IHC4_ARATH,F4JA83_ARATH,F4I1M8_ARATH Uncharacterized protein,Nucleic acid-binding, OB-fold-like protein,Nucleic acid-binding proteins superfamily 20183,60227,34931,39004 Uncharacterized protein,Nucleic acid-binding, OB-fold-like protein,Nucleic acid-binding proteins superfamily locus:2019799;,locus:1005716636;,locus:2084673;,locus:2029219; AT1G36920,AT2G05642,AT3G32260,AT1G36510 Domain of unknown function DUF223 NA NA NA NA NA NA NA ENOG411E2DW GT-3B O80450 TGT3B_ARATH Trihelix transcription factor GT-3b (Transcription factor GT-1-like) (Trihelix DNA-binding protein GT-3b) FUNCTION: Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. 34307 Trihelix transcription factor GT-3b (Transcription factor GT-1-like) (Trihelix DNA-binding protein GT-3b) mediator complex [GO:0016592]; nucleolus [GO:0005730]; nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2042847; AT2G38250 Transcription factor NA NA NA NA NA NA NA ENOG411E2DV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transcription factor Os05g0128000 protein Q0DL24 Q0DL24_ORYSJ Os05g0128000 Os05g0128000 OsJ_16984 OSNPB_050128000 ENOG411E2DI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411E2DH atpI P56758 ATPI_ARATH ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) FUNCTION: Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. {ECO:0000255|HAMAP-Rule:MF_01393}. 27350 ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; proton-transporting ATP synthase complex, coupling factor F(o) [GO:0045263]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986] locus:504954639; ATCG00150 it plays a direct role in the translocation of protons across the membrane (By similarity) ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) P0C2Y7 ATPI_ORYSJ atpI LOC_Osp1g00280 Nip041 FUNCTION: Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. {ECO:0000255|HAMAP-Rule:MF_01393}. ENOG411E2DK RBCS-2B,RBCS-1A,RBCS-1B,RBCS-3B,RBCS1A,RBCS3B P10797,P10795,P10796,P10798,F4HRR5,F4KA76,B3H5S2 RBS2B_ARATH,RBS1A_ARATH,RBS1B_ARATH,RBS3B_ARATH,F4HRR5_ARATH,F4KA76_ARATH,B3H5S2_ARATH Ribulose bisphosphate carboxylase small chain 2B, chloroplastic (RuBisCO small subunit 2B) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain 1A, chloroplastic (RuBisCO small subunit 1A) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain 1B, chloroplastic (RuBisCO small subunit 1B) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain 3B, chloroplastic (RuBisCO small subunit 3B) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity). {ECO:0000250}.,FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. {ECO:0000256|RuleBase:RU003627}. MISCELLANEOUS: There are four genes coding for RBS in Arabidopsis thaliana. MetaCyc:AT5G38420-MONOMER;,MetaCyc:AT1G67090-MONOMER;,MetaCyc:AT5G38430-MONOMER;,MetaCyc:AT5G38410-MONOMER; Carbon fixation in photosynthetic organisms (00710),Microbial metabolism in diverse environments (01120),Glyoxylate and dicarboxylate metabolism (00630),Metabolic pathways (01100) 4.1.1.39 20350,20216,20286,20284,14559,19395,20840 Ribulose bisphosphate carboxylase small chain 2B, chloroplastic (RuBisCO small subunit 2B) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain 1A, chloroplastic (RuBisCO small subunit 1A) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain 1B, chloroplastic (RuBisCO small subunit 1B) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain 3B, chloroplastic (RuBisCO small subunit 3B) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; thylakoid [GO:0009579]; monooxygenase activity [GO:0004497]; protein domain specific binding [GO:0019904]; ribulose-bisphosphate carboxylase activity [GO:0016984]; photorespiration [GO:0009853]; reductive pentose-phosphate cycle [GO:0019253]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; copper ion binding [GO:0005507]; monooxygenase activity [GO:0004497]; ribulose-bisphosphate carboxylase activity [GO:0016984]; chloroplast ribulose bisphosphate carboxylase complex biogenesis [GO:0080158]; photorespiration [GO:0009853]; photosynthesis [GO:0015979]; reductive pentose-phosphate cycle [GO:0019253]; response to blue light [GO:0009637]; response to cold [GO:0009409]; response to far red light [GO:0010218]; response to red light [GO:0010114],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; thylakoid [GO:0009579]; monooxygenase activity [GO:0004497]; protein domain specific binding [GO:0019904]; ribulose-bisphosphate carboxylase activity [GO:0016984]; photorespiration [GO:0009853]; reductive pentose-phosphate cycle [GO:0019253]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114],chloroplast [GO:0009507]; monooxygenase activity [GO:0004497]; protein domain specific binding [GO:0019904]; ribulose-bisphosphate carboxylase activity [GO:0016984]; photorespiration [GO:0009853]; reductive pentose-phosphate cycle [GO:0019253],plastid [GO:0009536]; monooxygenase activity [GO:0004497]; ribulose-bisphosphate carboxylase activity [GO:0016984]; carbon fixation [GO:0015977]; photorespiration [GO:0009853]; photosynthesis [GO:0015979],chloroplast [GO:0009507]; monooxygenase activity [GO:0004497]; ribulose-bisphosphate carboxylase activity [GO:0016984]; carbon fixation [GO:0015977]; photorespiration [GO:0009853]; photosynthesis [GO:0015979],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; thylakoid [GO:0009579]; monooxygenase activity [GO:0004497]; ribulose-bisphosphate carboxylase activity [GO:0016984]; carbon fixation [GO:0015977]; chloroplast ribulose bisphosphate carboxylase complex biogenesis [GO:0080158]; photorespiration [GO:0009853]; photosynthesis [GO:0015979]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114] locus:2177416;,locus:2033686;,locus:2177406;,locus:2177426; AT5G38420,AT1G67090,AT5G38430,AT5G38410 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 15-bisphosphate the primary event in carbon dioxide fixation as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity) NA NA NA NA NA NA NA ENOG411E2DJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2439) NA NA NA NA NA NA NA ENOG411E2DM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 Os07g0240200 protein (Putative glucan endo-1,3-beta-glucosidase) (cDNA clone:J023003K14, full insert sequence) Q8GTK3 Q8GTK3_ORYSJ P0523A04.121 Os07g0240200 OsJ_23659 OSNPB_070240200 ENOG411E2DN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein NA NA NA NA NA NA NA ENOG411E2DA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CysPc NA NA NA NA NA NA NA ENOG411E2DC NFYA10,NFYA2,NF-YA10,NF-YA2 Q8LFU0,Q9M9X4,A0A1P8BB86,F4K3V7,A0A1I9LSX7 NFYAA_ARATH,NFYA2_ARATH,A0A1P8BB86_ARATH,F4K3V7_ARATH,A0A1I9LSX7_ARATH Nuclear transcription factor Y subunit A-10 (AtNF-YA-10),Nuclear transcription factor Y subunit A-2 (AtNF-YA-2) (Transcriptional activator HAP2B),Nuclear factor Y, subunit A10,Nuclear factor Y, subunit A2 FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 29794,32139,19577,24691,36699 Nuclear transcription factor Y subunit A-10 (AtNF-YA-10),Nuclear transcription factor Y subunit A-2 (AtNF-YA-2) (Transcriptional activator HAP2B),Nuclear factor Y, subunit A10,Nuclear factor Y, subunit A2 CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; double fertilization forming a zygote and endosperm [GO:0009567]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. locus:2144113;,locus:2078072; AT5G06510,AT3G05690 Nuclear transcription factor Y subunit CCAAT-binding transcription factor subunit B family protein, expressed (HAP2 subunit of HAP complex) (Os12g0618600 protein) (cDNA clone:J033067G24, full insert sequence),CCAAT-binding transcription factor subunit B family protein, expressed (CCAAT-box transcription factor-related) (HAP2 subunit of HAP complex) (Os03g0647600 protein) (cDNA clone:002-102-F12, full insert sequence) Q2QM38,Q60DJ8 Q2QM38_ORYSJ,Q60DJ8_ORYSJ OsHAP2F LOC_Os12g42400 Os12g0618600 OsJ_36895 OSNPB_120618600,OsHAP2H LOC_Os03g44540 Os03g0647600 OSNPB_030647600 ENOG411E2DB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF300 OSJNBb0078D11.6 protein (Os04g0563100 protein),Os02g0670000 protein (Putative MAP kinase activating protein) Q7XSJ8,Q6ESQ4 Q7XSJ8_ORYSJ,Q6ESQ4_ORYSJ OSJNBb0078D11.6 Os04g0563100 OSNPB_040563100,Os02g0670000 Os02g0670000 OJ1725_H08.37 OsJ_07877 OSNPB_020670000 P0684A08.23 ENOG411E2DE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411E2DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411E2DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain Glycosyl hydrolase family 3 C terminal domain containing protein (Os11g0696400 protein) Q2QZ84 Q2QZ84_ORYSJ Os11g0696400 LOC_Os11g47350 Os11g0696400 OSNPB_110696400 ENOG411E2DF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional activator that binds specifically to the DNA sequence 5'- AG CCGAC-3'. Binding to the C-repeat DRE element mediates high salinity- and dehydration-inducible transcription (By similarity) Dehydration-responsive element-binding protein 1E (Protein DREB1E),Dehydration-responsive element-binding protein 1G (Protein DREB1G) Q8H273,Q6EP77 DRE1E_ORYSJ,DRE1G_ORYSJ DREB1E ERF30 Os04g0572400 LOC_Os04g48350 OSJNBa0019K04.2,DREB1G ERF25 Os02g0677300 LOC_Os02g45450 OsJ_007653 OSJNBb0005A04.16 P0135D07.43 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. ENOG411E99J MUL8.11 Q9ZR99,Q9LI95 Q9ZR99_ARATH,Q9LI95_ARATH DUF1336 family protein, putative (DUF1336) (Gb|AAD00543.1),AT3G29180 protein (DUF1336 family protein (DUF1336)) 58063,57659 DUF1336 family protein, putative (DUF1336) (Gb|AAD00543.1),AT3G29180 protein (DUF1336 family protein (DUF1336)) plasma membrane [GO:0005886] locus:2175648;,locus:2093868; AT5G39430,AT3G29180 Protein of unknown function (DUF1336) NA NA NA NA NA NA NA ENOG411E0F5 O22243 C3H31_ARATH DExH-box ATP-dependent RNA helicase DExH8 (EC 3.6.4.13) (Zinc finger CCCH domain-containing protein 31) (AtC3H31) (EC 3.6.4.12) 3.6.4.13; 3.6.4.12 115085 DExH-box ATP-dependent RNA helicase DExH8 (EC 3.6.4.13) (Zinc finger CCCH domain-containing protein 31) (AtC3H31) (EC 3.6.4.12) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2043413; AT2G47680 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411ECG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411ECG6 ZHD13 Q9FMY7 ZHD13_ARATH Zinc-finger homeodomain protein 13 (AtZHD13) (Homeobox protein 27) (AtHB-27) FUNCTION: Putative transcription factor. 27968 Zinc-finger homeodomain protein 13 (AtZHD13) (Homeobox protein 27) (AtHB-27) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers. {ECO:0000269|PubMed:16428600}. locus:2165502; AT5G42780 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411E0FT O64717 O64717_ARATH Putative transport protein (Small multi-drug export protein) 35523 Putative transport protein (Small multi-drug export protein) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2065248; AT2G02590 Putative small multi-drug export protein Os03g0800500 protein (Small multi-drug export protein, putative, expressed) (cDNA clone:006-207-B07, full insert sequence) (cDNA clone:J023042L23, full insert sequence) Q851R4 Q851R4_ORYSJ OSJNBa0052F07.9 LOC_Os03g58620 Os03g0800500 OSNPB_030800500 ENOG411E0FW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os06g0679400 protein (Putative transcription factor GAMyb) Q655P0 Q655P0_ORYSJ Os06g0679400 OSNPB_060679400 P0003H08.13 ENOG411E0FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO Os08g0192800 protein (Putative RNA-binding protein Virp1a) (cDNA clone:001-028-G11, full insert sequence) (cDNA clone:J013151N01, full insert sequence) (cDNA clone:J033058G13, full insert sequence) Q6Z1C1 Q6Z1C1_ORYSJ Os08g0192800 OsJ_26323 OSJNBa0056O06.23 OSNPB_080192800 ENOG411E0FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 3-7 (Germin-like protein 7) (OsGER7),Germin-like protein 3-8,Os03g0804600 protein (Fragment) Q10BU2,Q75HJ4,A0A0N7KI87 GL37_ORYSJ,GL38_ORYSJ,A0A0N7KI87_ORYSJ GER7 Os03g0804500 LOC_Os03g58980 OsJ_012450 OSJNBb0015I02.7,Os03g0804700 LOC_Os03g59010 OsJ_012452 OSJNBb0015I02.10,Os03g0804600 OSNPB_030804600 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E0FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frigida-like protein FRIGIDA-like protein Q10QK0 Q10QK0_ORYSJ Os03g0193225 LOC_Os03g09310 Os03g0193225 OsJ_09745 OSNPB_030193225 ENOG411ECGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECGC Q9LVN2 Y5815_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 86611 Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2161303; AT5G58150 STYKc NA NA NA NA NA NA NA ENOG411ECGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFG_C Os02g0543300 protein (Putative elongation factor 2) Q6ESY0 Q6ESY0_ORYSJ Os02g0543300 Os02g0543300 OsJ_07068 OSNPB_020543300 P0472F10.23 ENOG411ECGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECGD Q9C8H4,Q0IGL7 Q9C8H4_ARATH,Q0IGL7_ARATH Protein kinase superfamily protein (Protein kinase, putative),At1g51620 (Protein kinase superfamily protein) 38125,29750 Protein kinase superfamily protein (Protein kinase, putative),At1g51620 (Protein kinase superfamily protein) ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2017547; AT1G51620 STYKc NA NA NA NA NA NA NA ENOG411ECGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os01g0155000 protein (Putative PrMC3) (cDNA clone:001-007-A09, full insert sequence) (cDNA clone:J033053C20, full insert sequence) Q93VD4 Q93VD4_ORYSJ Os01g0155000 OsJ_00429 OSNPB_010155000 P0011G08.13 P0030H07.55 ENOG411E62M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E62K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os04g0586200 protein A3AWU7 A3AWU7_ORYSJ Os04g0586200 OsJ_15938 OSNPB_040586200 ENOG411E62J Q9M9P6 Q9M9P6_ARATH At3g03280 (T17B22.3 protein) 18245 At3g03280 (T17B22.3 protein) locus:2097740; AT3G03280 NA NA NA NA NA NA NA NA ENOG411E62B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin-repressed Os08g0453200 protein (Fragment) A0A0P0XGH0 A0A0P0XGH0_ORYSJ Os08g0453200 OSNPB_080453200 ENOG411E62A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0252100 protein A0A0P0WUP1 A0A0P0WUP1_ORYSJ Os06g0252100 OSNPB_060252100 ENOG411EDQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transporting ATPase C-terminus NA NA NA NA NA NA NA ENOG411EDQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: depolymerase NA NA NA NA NA NA NA ENOG411EDQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EDQD A0A1P8AVB5,F4I9V3,F4I9V0,F4I9V4 A0A1P8AVB5_ARATH,F4I9V3_ARATH,F4I9V0_ARATH,F4I9V4_ARATH Inactive ubiquitin carboxyl-terminal hydrolase-like protein,Ubiquitin carboxyl-terminal hydrolase family protein 15865,16842,36760,30211 Inactive ubiquitin carboxyl-terminal hydrolase-like protein,Ubiquitin carboxyl-terminal hydrolase family protein thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579],hydrolase activity [GO:0016787] locus:2200395;,locus:2200380;,locus:2200405; AT1G65160,AT1G65140,AT1G65170 Ubiquitin carboxyl-terminal hydrolase NA NA NA NA NA NA NA ENOG411E627 TCP12 A0AQW4,A0A1P8AWJ0 TCP12_ARATH,A0A1P8AWJ0_ARATH Transcription factor TCP12 (Protein BRANCHED 2),TCP domain protein 12 Increased branching-P. Cubas-2007 FUNCTION: Transcription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}. 41366,41866 Transcription factor TCP12 (Protein BRANCHED 2),TCP domain protein 12 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of secondary shoot formation [GO:2000032]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}. TISSUE SPECIFICITY: Expressed in axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924}. locus:2012403; AT1G68800 transcription factor NA NA NA NA NA NA NA ENOG411E624 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NOI protein Os06g0286375 protein A0A0P0WVN6 A0A0P0WVN6_ORYSJ Os06g0286375 OSNPB_060286375 ENOG411E622 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0713250 protein Q6ZFU7 Q6ZFU7_ORYSJ OJ1479_B12.8 Os02g0713250 OSNPB_020713250 ENOG411EDQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MORN Os08g0469700 protein (Fragment) Q0J537 Q0J537_ORYSJ Os08g0469700 Os08g0469700 OSNPB_080469700 ENOG411EDQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDQV O64781,O64783,A0A1P8AWT8 Y1639_ARATH,Y1137_ARATH,A0A1P8AWT8_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 (EC 2.7.11.1),S-locus lectin protein kinase family protein 2.7.11.1 93048,90857,74182 G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 (EC 2.7.11.1),S-locus lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] locus:2197704;,locus:2197734; AT1G61390,AT1G61370 Serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EDQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Family with sequence similarity 108 member NA NA NA NA NA NA NA ENOG411EDQS DTX47 Q945F0 DTX47_ARATH Protein DETOXIFICATION 47, chloroplastic (AtDTX47) (Multidrug and toxic compound extrusion protein 47) (MATE protein 47) (Protein ENHANCED DISEASE SUSCEPTIBILITY 5) (Protein EDS5) (Protein IMPORTANT FOR THE ARR PATHWAY 1) (Protein IAP1) (Protein SALICYLIC ACID INDUCTION DEFICIENT 1) (Protein SID1) (Protein SUSCEPTIBLE TO CORONATINE-DEFICIENT PST DC3000 3) (Protein SCORD3) DISRUPTION PHENOTYPE: Enhanced susceptibility to several bacterial pathogens and alterations in PR-1 gene expression (PubMed:9090877). No salicylic acid (SA) accumulation after pathogen inoculation and more susceptibility to both virulent and avirulent forms of Pseudomonas syringae and Peronospora parasitica (PubMed:10449575, PubMed:24594657). Age-related resistance (ARR)-defective (PubMed:11884688, PubMed:19694953). Defect in stomatal response during bacterial infection (PubMed:21998587). {ECO:0000269|PubMed:10449575, ECO:0000269|PubMed:11884688, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:21998587, ECO:0000269|PubMed:24594657, ECO:0000269|PubMed:9090877}. Low SA levels; Susceptible to disease-J. Metraux-2002 FUNCTION: Functions as a multidrug and toxin extrusion transporter in the export of salicylic acid (SA) from the chloroplast to the cytoplasm (PubMed:23757404). Plays an essential function in plant defense via the pathogen-induced salicylic acid (SA) accumulation (PubMed:11826312, PubMed:24594657). Acts also as a key component of the Age-related resistance (ARR) pathway (PubMed:11884688, PubMed:19694953, PubMed:24594657). {ECO:0000269|PubMed:11826312, ECO:0000269|PubMed:11884688, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:23757404, ECO:0000269|PubMed:24594657}. 59528 Protein DETOXIFICATION 47, chloroplastic (AtDTX47) (Multidrug and toxic compound extrusion protein 47) (MATE protein 47) (Protein ENHANCED DISEASE SUSCEPTIBILITY 5) (Protein EDS5) (Protein IMPORTANT FOR THE ARR PATHWAY 1) (Protein IAP1) (Protein SALICYLIC ACID INDUCTION DEFICIENT 1) (Protein SID1) (Protein SUSCEPTIBLE TO CORONATINE-DEFICIENT PST DC3000 3) (Protein SCORD3) chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; innate immune response [GO:0045087]; negative regulation of defense response [GO:0031348]; response to nematode [GO:0009624]; response to salicylic acid [GO:0009751]; salicylic acid biosynthetic process [GO:0009697] TISSUE SPECIFICITY: Preferentially expressed in the epidermal cells. {ECO:0000269|PubMed:23333976}. locus:2120267; AT4G39030 MatE NA NA NA NA NA NA NA ENOG411E7BR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Microtubule-binding protein MIP-T3 NA NA NA NA NA NA NA ENOG411E7BW F4JX59,A0A1P8B6X7,A0A1P8BBY9,Q949V8,Q84MD3,Q8GYB2,A0A1P8B6Y1,F4JP41,F4JX57 F4JX59_ARATH,A0A1P8B6X7_ARATH,A0A1P8BBY9_ARATH,Q949V8_ARATH,Q84MD3_ARATH,Q8GYB2_ARATH,A0A1P8B6Y1_ARATH,F4JP41_ARATH,F4JX57_ARATH Uncharacterized protein,At4g17310 (Uncharacterized protein At4g17310),At5g47455 (Uncharacterized protein At5g47455),Uncharacterized protein At5g47455/MNJ7.31 10815,9511,11190,10344,10357,11069,9897,10205,12449 Uncharacterized protein,At4g17310 (Uncharacterized protein At4g17310),At5g47455 (Uncharacterized protein At5g47455),Uncharacterized protein At5g47455/MNJ7.31 mitochondrion [GO:0005739] locus:2130819;,locus:505006678; AT5G47455,AT4G17310 NA NA NA NA NA NA NA NA ENOG411E7BT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E7BU Q93WK6 Q93WK6_ARATH DNA polymerase epsilon catalytic subunit A (Uncharacterized protein At1g19530) 13656 DNA polymerase epsilon catalytic subunit A (Uncharacterized protein At1g19530) anaerobic respiration [GO:0009061] locus:2016477; AT1G19530 NA NA NA NA NA NA NA NA ENOG411E7BC Q9ZV17,A0A1P8B0G6,F4ITZ8,F4ITZ9 Q9ZV17_ARATH,A0A1P8B0G6_ARATH,F4ITZ8_ARATH,F4ITZ9_ARATH Uncharacterized protein At2g38890,Uncharacterized protein 33670,35909,35046,33542 Uncharacterized protein At2g38890,Uncharacterized protein locus:2065006; AT2G38890 NA NA NA NA NA NA NA NA ENOG411E7BF LSU4 Q8L8S2 LSU4_ARATH Protein RESPONSE TO LOW SULFUR 4 DISRUPTION PHENOTYPE: Defects in flower and inflorescence development in short-day conditions and delayed flowering. {ECO:0000269|PubMed:20848913}. FUNCTION: Required for flower development in short-day conditions. {ECO:0000269|PubMed:20848913}. 10563 Protein RESPONSE TO LOW SULFUR 4 regulation of flower development [GO:0009909]; regulation of short-day photoperiodism, flowering [GO:0048587] locus:505006636; AT5G24655 Inherit from euNOG: response to low sulfur Os10g0509401 protein,Os10g0509600 protein A0A0P0XW25,A0A0P0XWF8 A0A0P0XW25_ORYSJ,A0A0P0XWF8_ORYSJ Os10g0509401 OSNPB_100509401,Os10g0509600 OSNPB_100509600 ENOG411E7BE APC13,BNS Q8L981,A0A1P8ARS8 APC13_ARATH,A0A1P8ARS8_ARATH Anaphase-promoting complex subunit 13 (Protein BONSAI),Bonsai DISRUPTION PHENOTYPE: Abnormalities in shoot and inflorescence development leading to the 'bonsai' phenotype characterized by short, compact inflorescence, resulting in reduced plant height, disrupted phyllotaxis, reduced apical dominance and production of clusters of bracts and flowers at the apex of the inflorescence (PubMed:17627280, PubMed:16117643, PubMed:9450349). Reduced seed set mostly due to impaired pollen maturation and thus abnormal male transmission. Defects in mature miRNA miR159 accumulation (PubMed:21441434). {ECO:0000269|PubMed:16117643, ECO:0000269|PubMed:17627280, ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:9450349}. The bns-2 mutant has defects in inflorescence development. Short inflorescence stems-T. Kakutani-2007 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins (By similarity). Regulates global growth and development, including phyllotaxis and apical dominance (PubMed:17627280). Required for pollen maturation. Promotes (pri) miRNA transcription of each MIR159 genes (PubMed:21441434). {ECO:0000250|UniProtKB:Q9BS18, ECO:0000269|PubMed:17627280, ECO:0000269|PubMed:21441434}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000250|UniProtKB:Q9BS18}. Progesterone-mediated oocyte maturation (04914),Ubiquitin mediated proteolysis (04120),Oocyte meiosis (04114),Cell cycle (04110) 7145,6554 Anaphase-promoting complex subunit 13 (Protein BONSAI),Bonsai anaphase-promoting complex [GO:0005680]; cell cycle [GO:0007049]; cell division [GO:0051301]; inflorescence development [GO:0010229]; phyllome development [GO:0048827]; pollen maturation [GO:0010152]; pri-miRNA transcription from RNA polymerase II promoter [GO:0061614]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, buds, flowers, and seeds. {ECO:0000269|PubMed:17627280}. locus:505006219; AT1G73177 NA Os07g0633800 protein Q0D4D3 Q0D4D3_ORYSJ Os07g0633800 Os07g0633800 OSNPB_070633800 ENOG411E7BM MDH9.10 Q9FIH6 Q9FIH6_ARATH SAUR-like auxin-responsive protein family 12662 SAUR-like auxin-responsive protein family response to auxin [GO:0009733] locus:2162356; AT5G42410 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E7B5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE502 protein (Os05g0117300 protein) Q0DL85 Q0DL85_ORYSJ Os05g0117300 OsCLE502 Os05g0117300 OSNPB_050117300 ENOG411EFBN Q9SKN0 Q9SKN0_ARATH Uncharacterized protein At2g28400 18055 Uncharacterized protein At2g28400 locus:2057542; AT2G28400 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411EFBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UDP-Glycosyltransferase Os05g0500200 protein A0A0P0WP76 A0A0P0WP76_ORYSJ Os05g0500200 OSNPB_050500200 ENOG411EFBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411EFBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBA Q9SZ34 Q9SZ34_ARATH At4g26950 (Uncharacterized protein AT4g26950) (Uncharacterized protein F10M23.290) 16602 At4g26950 (Uncharacterized protein AT4g26950) (Uncharacterized protein F10M23.290) plasmodesma [GO:0009506] locus:2116457; AT4G26950 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411EFBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFBW Q9SYH0 Q9SYH0_ARATH F15I1.22 (Uncharacterized protein At1g54120) 14432 F15I1.22 (Uncharacterized protein At1g54120) locus:2014425; AT1G54120 NA NA NA NA NA NA NA NA ENOG411EFBS Q9C684 Q9C684_ARATH Heavy metal transport/detoxification superfamily protein (Proline-rich protein, putative) (Putative proline-rich protein) 19138 Heavy metal transport/detoxification superfamily protein (Proline-rich protein, putative) (Putative proline-rich protein) cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; defense response to fungus [GO:0050832]; metal ion transport [GO:0030001]; negative regulation of defense response to bacterium [GO:1900425] locus:2026042; AT1G51090 NA NA NA NA NA NA NA NA ENOG411EFB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os08g0105600 protein A0A0P0XAQ5 A0A0P0XAQ5_ORYSJ Os08g0105600 OSNPB_080105600 ENOG411EFB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain NA NA NA NA NA NA NA ENOG411EFB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFB3 F11C1_190 Q9SND2,F4J0L4 Q9SND2_ARATH,F4J0L4_ARATH Membrane insertase, putative (DUF1685) (Uncharacterized protein F11C1_190),Membrane insertase, putative (DUF1685) 19971,19317 Membrane insertase, putative (DUF1685) (Uncharacterized protein F11C1_190),Membrane insertase, putative (DUF1685) locus:2074875; AT3G50350 Protein of unknown function (DUF1685) NA NA NA NA NA NA NA ENOG411EFB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Erg28 like protein NA NA NA NA NA NA NA ENOG411EFB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase NA NA NA NA NA NA NA ENOG411EFB0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription initiation factor IIF NA NA NA NA NA NA NA ENOG411EKQ8 RAP74 Q9SU25 T2FA_ARATH Transcription initiation factor IIF subunit alpha (TFIIF-alpha) (General transcription factor IIF subunit 1) (Transcription initiation factor RAP74 homolog) (AtRAP74) FUNCTION: TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation (By similarity). {ECO:0000250}. 72343 Transcription initiation factor IIF subunit alpha (TFIIF-alpha) (General transcription factor IIF subunit 1) (Transcription initiation factor RAP74 homolog) (AtRAP74) nucleus [GO:0005634]; catalytic activity [GO:0003824]; DNA binding [GO:0003677]; protein C-terminus binding [GO:0008022]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription initiation from RNA polymerase II promoter [GO:0006367] AT4G12610 Transcription initiation factor IIF alpha subunit (TFIIF-alpha) NA NA NA NA NA NA NA ENOG411EKQ3 Q9SA71 GLPT3_ARATH Putative glycerol-3-phosphate transporter 3 (G-3-P transporter 3) (Glycerol-3-phosphate permease 3) (AtG3Pp3) (G-3-P permease 3) R-ATH-70263; 3.6.3.20; 55089 Putative glycerol-3-phosphate transporter 3 (G-3-P transporter 3) (Glycerol-3-phosphate permease 3) (AtG3Pp3) (G-3-P permease 3) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; carbohydrate transport [GO:0008643]; phosphate ion homeostasis [GO:0055062]; transmembrane transport [GO:0055085] locus:2028125; AT1G30560 Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EKQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EKQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EKQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA early fruit mRNA NA NA NA NA NA NA NA ENOG411EKQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription initiation factor IIF alpha subunit (TFIIF-alpha) Os03g0251800 protein (Transcription initiation factor IIF, alpha subunit family protein, expressed) (cDNA clone:J033025I20, full insert sequence),Mutant TFIIF-alpha, putative, expressed (Os10g0188100 protein) (Putative transcription initiation factor) (cDNA clone:J023112E10, full insert sequence) (cDNA, clone: J100012M17, full insert sequence),Os10g0188100 protein (Fragment) Q10P09,Q53QT1,A0A0N7KRJ2 Q10P09_ORYSJ,Q53QT1_ORYSJ,A0A0N7KRJ2_ORYSJ Os03g0251800 LOC_Os03g14720 OSNPB_030251800,Os10g0188100 LOC_Os10g10990 Os10g0188100 OSNPB_100188100,Os10g0188100 OSNPB_100188100 ENOG411EKQ6 O23596,Q9C5L3 GLPT4_ARATH,GLPT1_ARATH Putative glycerol-3-phosphate transporter 4 (G-3-P transporter 4) (Glycerol-3-phosphate permease 4) (AtG3Pp4) (G-3-P permease 4),Putative glycerol-3-phosphate transporter 1 (G-3-P transporter 1) (Glycerol-3-phosphate permease 1) (AtG3Pp1) (G-3-P permease 1) (Protein PHOSPHATE STARVATION-INDUCED GENE 3) (AtPS3) R-ATH-70263; 3.6.3.20; 59075,56309 Putative glycerol-3-phosphate transporter 4 (G-3-P transporter 4) (Glycerol-3-phosphate permease 4) (AtG3Pp4) (G-3-P permease 4),Putative glycerol-3-phosphate transporter 1 (G-3-P transporter 1) (Glycerol-3-phosphate permease 1) (AtG3Pp1) (G-3-P permease 1) (Protein PHOSPHATE STARVATION-INDUCED GENE 3) (AtPS3) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; transporter activity [GO:0005215]; carbohydrate transport [GO:0008643]; phosphate ion homeostasis [GO:0055062]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; carbohydrate transport [GO:0008643]; phosphate ion homeostasis [GO:0055062]; transmembrane transport [GO:0055085] locus:2129176;,locus:2099585; AT4G17550,AT3G47420 glycerol-3-phosphate transporter Os08g0156600 protein (cDNA clone:J023127F09, full insert sequence),Os02g0652800 protein (Putative glycerol-3-phosphate transporter) (cDNA clone:001-115-F09, full insert sequence),Os08g0156600 protein (Fragment),Os04g0555300 protein (Fragment) Q0J7X7,Q6H8H1,A0A0P0XCF4,A0A0P0WDN9,A0A0P0WDB2 Q0J7X7_ORYSJ,Q6H8H1_ORYSJ,A0A0P0XCF4_ORYSJ,A0A0P0WDN9_ORYSJ,A0A0P0WDB2_ORYSJ Os08g0156600 Os08g0156600 OSNPB_080156600,Os02g0652800 OSNPB_020652800 P0491E01.22,Os08g0156600 OSNPB_080156600,Os04g0555300 OSNPB_040555300 ENOG411EKQ5 Q9SB41 GLPT2_ARATH Putative glycerol-3-phosphate transporter 2 (G-3-P transporter 2) (Glycerol-3-phosphate permease 2) (AtG3Pp2) (G-3-P permease 2) (Protein ROOT HAIR SPECIFIC 15) (AtRHS15) R-ATH-70263; 3.6.3.20; 54376 Putative glycerol-3-phosphate transporter 2 (G-3-P transporter 2) (Glycerol-3-phosphate permease 2) (AtG3Pp2) (G-3-P permease 2) (Protein ROOT HAIR SPECIFIC 15) (AtRHS15) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; carbohydrate transport [GO:0008643]; phosphate ion homeostasis [GO:0055062]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in the root-hair differentiation zone. {ECO:0000269|PubMed:16367956}. locus:2122664; AT4G25220 Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EKQ4 G3Pp5 Q9SL56,F4IUB7 GLPT5_ARATH,F4IUB7_ARATH Putative glycerol-3-phosphate transporter 5 (G-3-P transporter 5) (Glycerol-3-phosphate permease 5) (AtG3Pp5) (G-3-P permease 5),Major facilitator superfamily protein R-ATH-70263; 53056,32765 Putative glycerol-3-phosphate transporter 5 (G-3-P transporter 5) (Glycerol-3-phosphate permease 5) (AtG3Pp5) (G-3-P permease 5),Major facilitator superfamily protein integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; carbohydrate transport [GO:0008643]; phosphate ion homeostasis [GO:0055062]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2056457; AT2G13100 glycerol-3-phosphate transporter Os06g0179900 protein (Putative glycerol 3-phosphate permease) Q8H607 Q8H607_ORYSJ Os06g0179900 OSJNBa0035I03.23 OSJNBb0019L07.5 OSNPB_060179900 ENOG411EKQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0564300 protein (cDNA, clone: J080022K01, full insert sequence) Q6Z7F2 Q6Z7F2_ORYSJ Os02g0564300 OJ1712_E04.24 OSNPB_020564300 P0020C11.13 ENOG411EKQR MAH20.19 F4KB54 F4KB54_ARATH DDT domain-containing protein 84399 DDT domain-containing protein nucleus [GO:0005634] locus:2159537; AT5G08630 DDT domain-containing protein NA NA NA NA NA NA NA ENOG411EKQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-utilising chromatin assembly and remodelling N-terminal NA NA NA NA NA NA NA ENOG411EKQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0443800 protein) Q2QS10 Q2QS10_ORYSJ Os12g0443800 LOC_Os12g25720 OSNPB_120443800 ENOG411EKQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RRM NA NA NA NA NA NA NA ENOG411EKQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others NA NA NA NA NA NA NA ENOG411EKQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others NA NA NA NA NA NA NA ENOG411EKQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others Os07g0296200 protein (RRM-containing RNA-binding protein-like) (cDNA clone:002-108-B11, full insert sequence),Os07g0296200 protein,Os09g0299500 protein Q6YS82,A0A0P0X5A3,A0A0N7KQI8 Q6YS82_ORYSJ,A0A0P0X5A3_ORYSJ,A0A0N7KQI8_ORYSJ B1272H04.13-1 Os07g0296200 OsJ_23906 OSNPB_070296200,Os07g0296200 OSNPB_070296200,Os09g0299500 OSNPB_090299500 ENOG411EKQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others Os07g0490600 protein (Putative p53 binding protein) (cDNA clone:J033066J12, full insert sequence) Q7XHQ8 Q7XHQ8_ORYSJ Os07g0490600 Os07g0490600 OSNPB_070490600 P0477A12.38 ENOG411EKQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ranBP2-type zinc finger protein NA NA NA NA NA NA NA ENOG411E19E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif 2 Os02g0517531 protein (Fragment) A0A0P0VJM2 A0A0P0VJM2_ORYSJ Os02g0517531 OSNPB_020517531 ENOG411E19F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os03g0245200 protein (Proline-rich protein, putative, expressed) (cDNA clone:001-100-E04, full insert sequence) Q10P65 Q10P65_ORYSJ LOC_Os03g14130 Os03g0245200 OsJ_10117 OSNPB_030245200 ENOG411E19A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein NA NA NA NA NA NA NA ENOG411E19M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3444) Os01g0927400 protein Q0JGE6 Q0JGE6_ORYSJ Os01g0927400 Os01g0927400 OSNPB_010927400 ENOG411E19I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain B3 domain-containing protein Os03g0120900 Q5JNA1 Y1237_ORYSJ Os01g0723700 LOC_Os01g52540 P0022F10.18 ENOG411E19K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411E19J KAO2,KAO1 Q9C5Y2,O23051 KAO2_ARATH,KAO1_ARATH Ent-kaurenoic acid oxidase 2 (AtKAO2) (EC 1.14.13.79) (Cytochrome P450 88A4),Ent-kaurenoic acid oxidase 1 (AtKAO1) (EC 1.14.13.79) (Cytochrome P450 88A3) FUNCTION: Catalyzes three successive oxidations of ent-kaurenoic acid giving gibberellin 12 (GA12), a key step in gibberellins (GAs) biosynthesis. GAs, which are involved many processes, including stem elongation, play a central role in plant development. {ECO:0000269|PubMed:11172076}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT2G32440-MONOMER;MetaCyc:AT2G32440-MONOMER;,ARA:AT1G05160-MONOMER;MetaCyc:AT1G05160-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.13.79 56750,56409 Ent-kaurenoic acid oxidase 2 (AtKAO2) (EC 1.14.13.79) (Cytochrome P450 88A4),Ent-kaurenoic acid oxidase 1 (AtKAO1) (EC 1.14.13.79) (Cytochrome P450 88A3) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ent-kaurenoate oxidase activity [GO:0051777]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; gibberellin biosynthetic process [GO:0009686]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] TISSUE SPECIFICITY: Widely expressed. Highly expressed in influorescence stem, influorescence, and silique tissue. Weakly expressed in cauline and rosette leaves. Expressed at a weaker level in stem and influorescence than AtKAO1/CYP88A3. {ECO:0000269|PubMed:11172076}.,TISSUE SPECIFICITY: Widely expressed. Highly expressed in influorescence stem, influorescence, and silique tissue. Weakly expressed in cauline and rosette leaves. Expressed at a higher level in stem and influorescence than AtKAO2/CYP88A4. {ECO:0000269|PubMed:11172076}. locus:2062623;,locus:2207240; AT2G32440,AT1G05160 Ent-kaurenoic acid oxidase Ent-kaurenoic acid oxidase (OsKAO) (EC 1.14.13.79) (Cytochrome P450 88A5) (Protein REDUCED POLLEN ELONGATION 1) Q5VRM7 KAO_ORYSJ KAO CYP88A5 RPE1 Os06g0110000 LOC_Os06g02019 OSJNBa0004I20.18 P0514G12.42 DISRUPTION PHENOTYPE: Severe dwarf phenotype without flower or seed development. {ECO:0000269|PubMed:15075394}. FUNCTION: Involved in gibberellin (GA) biosynthesis. Catalyzes three successive oxidations of ent-kaurenoic acid giving gibberellin 12 (GA12), a key step in GAs biosynthesis. GAs, which are involved many processes, including stem elongation, play a central role in plant development (Probable). Required for pollen germination and elongation (PubMed:18083909). {ECO:0000269|PubMed:18083909, ECO:0000305|PubMed:15075394}. ENOG411E19U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os07g0143200 protein A0A0P0X2F6 A0A0P0X2F6_ORYSJ Os07g0143200 OSNPB_070143200 ENOG411E19T Q9FYM1 Q9FYM1_ARATH F21J9.8 (HXXXD-type acyl-transferase family protein) ARA:AT1G24420-MONOMER; 48825 F21J9.8 (HXXXD-type acyl-transferase family protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2024061; AT1G24420 Transferase family NA NA NA NA NA NA NA ENOG411E19W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411E19V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os08g0457400 protein (Putative Avr9/Cf-9 rapidly elicited protein) (cDNA clone:002-119-E08, full insert sequence) Q6Z0P8 Q6Z0P8_ORYSJ Os08g0457400 B1144B06.39 OsJ_27563 OSNPB_080457400 P0493A04.3 ENOG411E19Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os07g0581366 protein (Fragment) A0A0P0X8J6 A0A0P0X8J6_ORYSJ Os07g0581366 OSNPB_070581366 ENOG411E19P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0231900 protein (cDNA clone:001-115-G02, full insert sequence) Q7EY28 Q7EY28_ORYSJ Os07g0231900 OSJNBa0086N05.124 OSNPB_070231900 ENOG411E19S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B6 (Beta-expansin-6) (OsEXPB6) (OsaEXPb1.8) Q7XCA7 EXPB6_ORYSJ EXPB6 Os10g0555600 LOC_Os10g40700 OSJNBb0014I11.3 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E19R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E19Y ARD3,ARD1,ARD2,ATARD2 Q8W108,O48707,Q8GXE2,A0A1P8AZL0,A0A1P8B4X2,A0A1P8AZL9,B3H6E4,A0A1P8B4W3,A0A1P8AZM1,F4JIE0,F4JIE1 MTND3_ARATH,MTND1_ARATH,MTND2_ARATH,A0A1P8AZL0_ARATH,A0A1P8B4X2_ARATH,A0A1P8AZL9_ARATH,B3H6E4_ARATH,A0A1P8B4W3_ARATH,A0A1P8AZM1_ARATH,F4JIE0_ARATH,F4JIE1_ARATH 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 3) (ARD 3) (Fe-ARD 3),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 1) (ARD 1) (Fe-ARD 1),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 2) (ARD 2) (Fe-ARD 2),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring)) (ARD) (Fe-ARD) FUNCTION: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). {ECO:0000255|HAMAP-Rule:MF_03154}.,FUNCTION: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). {ECO:0000256|HAMAP-Rule:MF_03154, ECO:0000256|SAAS:SAAS00003715}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 5/6. {ECO:0000255|HAMAP-Rule:MF_03154}.,PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 5/6. {ECO:0000256|HAMAP-Rule:MF_03154, ECO:0000256|SAAS:SAAS00003708}. ARA:AT4G14710-MONOMER;,ARA:AT2G26400-MONOMER;,ARA:AT4G14716-MONOMER; R-ATH-1237112; 1.13.11.54 23356,23442,22588,25580,21365,25372,21598,20625,27511,23484,23620 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 3) (ARD 3) (Fe-ARD 3),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 1) (ARD 1) (Fe-ARD 1),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 2) (ARD 2) (Fe-ARD 2),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring)) (ARD) (Fe-ARD) cytoplasm [GO:0005737]; nucleus [GO:0005634]; acireductone dioxygenase [iron(II)-requiring] activity [GO:0010309]; metal ion binding [GO:0046872]; L-methionine salvage from methylthioadenosine [GO:0019509]; methionine metabolic process [GO:0006555],cytoplasm [GO:0005737]; nucleus [GO:0005634]; acireductone dioxygenase [iron(II)-requiring] activity [GO:0010309]; heteropolysaccharide binding [GO:0010297]; metal ion binding [GO:0046872]; L-methionine salvage from methylthioadenosine [GO:0019509]; methionine metabolic process [GO:0006555],cytoplasm [GO:0005737]; nucleus [GO:0005634]; acireductone dioxygenase [iron(II)-requiring] activity [GO:0010309]; iron ion binding [GO:0005506]; L-methionine salvage from methylthioadenosine [GO:0019509]; methionine metabolic process [GO:0006555]; regulation of cell division [GO:0051302],cytoplasm [GO:0005737]; nucleus [GO:0005634]; acireductone dioxygenase [iron(II)-requiring] activity [GO:0010309]; iron ion binding [GO:0005506]; L-methionine salvage from methylthioadenosine [GO:0019509],cytosol [GO:0005829]; nucleus [GO:0005634]; acireductone dioxygenase [iron(II)-requiring] activity [GO:0010309]; iron ion binding [GO:0005506]; L-methionine salvage from methylthioadenosine [GO:0019509] locus:2066321;,locus:505006465;,locus:2130140; AT4G14710,AT2G26400,AT4G14716 Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 12-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (By similarity) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 1) (ARD 1) (Fe-ARD 1) (OsIDI1) (Submergence-induced protein 2),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 2) (ARD 2) (Fe-ARD 2) (Submergence-induced protein 2A) A1L4T4,Q10RE5 MTND1_ORYSJ,MTND2_ORYSJ ARD1 SIP2 Os10g0419400 LOC_Os10g28350 OSJNBa0006I13.11,ARD2 SIP2A Os03g0161800 LOC_Os03g06620 OJ1607A12.13 OsJ_09506 FUNCTION: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). {ECO:0000255|HAMAP-Rule:MF_03154}. ENOG411E19X DTX41,TT12 Q9LYT3,A0A1I9LM17 DTX41_ARATH,A0A1I9LM17_ARATH Protein DETOXIFICATION 41 (AtDTX41) (Multidrug and toxic compound extrusion protein 41) (MATE protein 41) (Protein TANNIN-DEFICIENT SEED 3) (Protein TRANSPARENT TESTA 12),MATE efflux family protein DISRUPTION PHENOTYPE: Pale brown seeds due to a strong reduction of proanthocyanidin deposition in vacuoles of endothelial cells. {ECO:0000269|PubMed:11283341, ECO:0000269|PubMed:12376625, ECO:0000269|PubMed:17601828, ECO:0000269|PubMed:20180920}. Yellow seed coat-M. Koornneef-2001 FUNCTION: Acts as a flavonoid/H(+)-antiporter that control the vacuolar sequestration of flavonoids in the seed coat endothelium (PubMed:11283341, PubMed:17601828). Could transport the anthocyanin cyanidin-3-O-glucoside (PubMed:17601828) and epicatechin 3'-O-glucoside (PubMed:19684242) in vitro. {ECO:0000269|PubMed:11283341, ECO:0000269|PubMed:17601828, ECO:0000269|PubMed:19684242}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. R-ATH-425366; 55147,46451 Protein DETOXIFICATION 41 (AtDTX41) (Multidrug and toxic compound extrusion protein 41) (MATE protein 41) (Protein TANNIN-DEFICIENT SEED 3) (Protein TRANSPARENT TESTA 12),MATE efflux family protein integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; drug transmembrane transporter activity [GO:0015238]; solute:proton antiporter activity [GO:0015299]; transmembrane transporter activity [GO:0022857]; drug transmembrane transport [GO:0006855]; flavonoid biosynthetic process [GO:0009813]; maintenance of seed dormancy [GO:0010231]; proanthocyanidin biosynthetic process [GO:0010023],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] DEVELOPMENTAL STAGE: Expressed with a peak at the early globular stage and until the late heart-torpedo stage of embryo development. {ECO:0000269|PubMed:11283341}. TISSUE SPECIFICITY: Expressed in reproductive tissues, from buds to siliques. Restricted to the endothelium layer of the ovule and the seed coat. {ECO:0000269|PubMed:11283341, ECO:0000269|PubMed:17601828}. locus:2077725; AT3G59030 protein TRANSPARENT TESTA Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q2QM65 Q2QM65_ORYSJ LOC_Os12g42130 Os12g0615700 OsJ_36878 OSNPB_120615700 ENOG411E19Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN Os04g0165000 protein (Fragment) A0A0N7KIK4 A0A0N7KIK4_ORYSJ Os04g0165000 OSNPB_040165000 ENOG411E195 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0620600 protein Q8LHB1 Q8LHB1_ORYSJ P0594D10.115 Os07g0620600 OSNPB_070620600 ENOG411E194 F4JMX1 F4JMX1_ARATH HXXXD-type acyl-transferase family protein 52642 HXXXD-type acyl-transferase family protein transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2118299; AT4G29250 Transferase family NA NA NA NA NA NA NA ENOG411E197 TBL8,TBL9 Q9CAX1,Q9FFZ4,A0A1P8BE49 TBL8_ARATH,TBL9_ARATH,A0A1P8BE49_ARATH Protein trichome birefringence-like 8,Protein trichome birefringence-like 9,TRICHOME BIREFRINGENCE-LIKE 9 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 49853,48140,36017 Protein trichome birefringence-like 8,Protein trichome birefringence-like 9,TRICHOME BIREFRINGENCE-LIKE 9 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],integral component of membrane [GO:0016021] locus:2080767;,locus:2160717; AT3G11570,AT5G06230 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411E196 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Sodium channel modifier 1 Os08g0477600 protein (Fragment) A0A0P0XGY0 A0A0P0XGY0_ORYSJ Os08g0477600 OSNPB_080477600 ENOG411E191 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Membrane-associated salt-inducible protein-like (Os01g0616600 protein) Q9ASH1 Q9ASH1_ORYSJ Os01g0616600 Os01g0616600 OSNPB_010616600 P0686E09.16 ENOG411E190 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0566700 protein (cDNA clone:J033106P12, full insert sequence),Os04g0448200 protein (Fragment) Q6YTI7,A0A0P0WB20 Q6YTI7_ORYSJ,A0A0P0WB20_ORYSJ Os02g0566700 OsJ_07188 OSNPB_020566700 P0020C11.47 P0020D05.14,Os04g0448200 OSNPB_040448200 ENOG411E199 BHLH14,BHLH28 O23090,Q9LUK7 BH014_ARATH,BH028_ARATH Transcription factor bHLH14 (Basic helix-loop-helix protein 14) (AtbHLH14) (bHLH 14) (Transcription factor EN 33) (bHLH transcription factor bHLH014),Transcription factor bHLH28 (Basic helix-loop-helix protein 28) (AtbHLH28) (bHLH 28) (Transcription factor EN 40) (bHLH transcription factor bHLH028) atnig1-1 plants show reduced survival rate fresh weight chlorophyll content and protein content under salt stress. 47733,57348 Transcription factor bHLH14 (Basic helix-loop-helix protein 14) (AtbHLH14) (bHLH 14) (Transcription factor EN 33) (bHLH transcription factor bHLH014),Transcription factor bHLH28 (Basic helix-loop-helix protein 28) (AtbHLH28) (bHLH 28) (Transcription factor EN 40) (bHLH transcription factor bHLH028) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; calcium ion binding [GO:0005509]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; hyperosmotic salinity response [GO:0042538]; regulation of transcription, DNA-templated [GO:0006355]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:2134583;,locus:2172932; AT4G00870,AT5G46830 Transcription factor NA NA NA NA NA NA NA ENOG411DSBN YUP8H12R.46 Q0WRV2 Q0WRV2_ARATH Mitochondrial transcription termination factor family protein (Uncharacterized protein At1g78930) 67564 Mitochondrial transcription termination factor family protein (Uncharacterized protein At1g78930) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2207420; AT1G78930 mTERF Os10g0511300 protein,Os09g0560100 protein B9G6L2,A0A0P0XQC4 B9G6L2_ORYSJ,A0A0P0XQC4_ORYSJ Os10g0511300 OsJ_32131 OSNPB_100511300,Os09g0560100 OSNPB_090560100 ENOG411DSBH TIM Q9SKP6,A8MRE8 TPIC_ARATH,A8MRE8_ARATH Triosephosphate isomerase, chloroplastic (TIM) (Triose-phosphate isomerase) (EC 5.3.1.1),Triosephosphate isomerase This mutant has no visible phenotypic abnormalities.,This mutant is severely stunted in growth. The seeds germinate at a rate comparable to wild type seeds but they begin to show aberrant phenotypes 3 to 4 days post-germination. Their cotyledons are paler and their primary roots are shorter than in wild type seedlings. The mutants have fewer chloroplasts per cell and the chloroplast differentiation seems to be delayed. They have fewer starch granules in their stroma. These mutants grow like wild type seedlings under dark-grown conditions. Light-grown pdtpi mutant tissue has roughly 40% less triose phosphate isomerase activity than comparable wild-type tissue. pdtpi seedlings also have elevated levels of glycerol glycerol-3-phosphate and dihydroxyacetone phosphate (DHAP) and reduced levels of glyceraldehyde-3-phosphate. The level of methylglyoxal (MG) is doubled in mutant seedlings. Total lipid content is slightly reduced but there are notable differences between various lipid components (e.g. MGDG vs. DGDG). Overall the changes in composition indicate an enhancement of the eukaryotic galactolipid biosynthesis pathway and a decrease in the prokaryotic pathway variant. DHAP and MG accumulation in the mutant may be responsible for many of the aberrant phenotypes. Seedling lethal-J. Thelen-2010 MISCELLANEOUS: In plants, there are two types of TPIS, cytosolic and plastid. PATHWAY: Carbohydrate biosynthesis; Calvin cycle. ARA:AT2G21170-MONOMER; R-ATH-70171;R-ATH-70263; 5.3.1.1 33346,32307 Triosephosphate isomerase, chloroplastic (TIM) (Triose-phosphate isomerase) (EC 5.3.1.1),Triosephosphate isomerase apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; triose-phosphate isomerase activity [GO:0004807]; chloroplast organization [GO:0009658]; gluconeogenesis [GO:0006094]; glyceraldehyde-3-phosphate biosynthetic process [GO:0046166]; glycerol catabolic process [GO:0019563]; glycolytic process [GO:0006096]; multicellular organism reproduction [GO:0032504]; primary root development [GO:0080022]; reductive pentose-phosphate cycle [GO:0019253]; triglyceride mobilization [GO:0006642],triose-phosphate isomerase activity [GO:0004807]; glycolytic process [GO:0006096] locus:2047072; AT2G21170 triosephosphate isomerase Os09g0535000 protein (Putative Triosephosphate isomerase, chloroplast),Os09g0535000 protein (Fragment),Os09g0535000 protein Q69K00,A0A0P0XPW0,A0A0P0XQK6 Q69K00_ORYSJ,A0A0P0XPW0_ORYSJ,A0A0P0XQK6_ORYSJ P0569E11.2-1 OJ1112_E07.32-1 Os09g0535000 OSNPB_090535000,Os09g0535000 OSNPB_090535000 ENOG411DSBJ FRS9 Q9SZL7 FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 FUNCTION: Putative transcription activator involved in regulating light control of development. May act as a negative regulator specific to phyB signaling. {ECO:0000269|PubMed:15591448}. 62250 Protein FAR1-RELATED SEQUENCE 9 nucleus [GO:0005634]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2121003; AT4G38170 protein FAR1-RELATED SEQUENCE NA NA NA NA NA NA NA ENOG411DSBU CYP715A1 F4KG63 F4KG63_ARATH Cytochrome P450, family 715, subfamily A, polypeptide 1 58983 Cytochrome P450, family 715, subfamily A, polypeptide 1 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2156672; AT5G52400 cytochrome P450 Os02g0824100 protein (Putative cytochrome P450),Os01g0100300 protein (Fragment),Os02g0296700 protein Q6K9W6,A0A0P0UWT2,A0A0P0VHY2 Q6K9W6_ORYSJ,A0A0P0UWT2_ORYSJ,A0A0P0VHY2_ORYSJ Os02g0824100 Os02g0824100 OJ1063_D06.8 OJ1136_C04.16 OsJ_08938 OSNPB_020824100,Os01g0100300 OSNPB_010100300,Os02g0296700 OSNPB_020296700 ENOG411DSBW KIN12C,KIN12E,KIN12D,POK1 Q27IK7,F4J1U4,Q27IK6,A0A1I9LN38,A0A1I9LN37 KN12C_ARATH,KN12E_ARATH,KN12D_ARATH,A0A1I9LN38_ARATH,A0A1I9LN37_ARATH Kinesin-like protein KIN-12C (Phragmoplast orienting kinesin 1),Kinesin-like protein KIN-12E,Kinesin-like protein KIN-12D (Phragmoplast orienting kinesin 2),Phragmoplast orienting kinesin 1 DISRUPTION PHENOTYPE: No visible phenotype. Pok1 and pok2 double mutant dissplays smaller cotyledons as well as shorter, wider roots and hypocotyls with adult plants exhibiting a dwarfed stature and producing reduced numbers of seeds. {ECO:0000269|PubMed:16682350}.,DISRUPTION PHENOTYPE: No visible phenotype. Pok1 and pok2 double mutant displays smaller cotyledons as well as shorter, wider roots and hypocotyls with adult plants exhibiting a dwarfed stature and producing reduced numbers of seeds. {ECO:0000269|PubMed:16682350}. No visible phenotype.,At seedling stage pok1/pok2 double mutants differ from wild-type by having smaller cotyledons as well as shorter wider roots and hypocotyls. Adult plants exhibit a dwarfed stature but all organs are present although miniaturized. Plants are fertile but produce reduced numbers of seeds. Microscopic observation revealed highly disordered root meristem cell patterns with most walls lacking parallel or perpendicular alignment to the longitudinal axis of the root and most cells exhibiting irregular shapes. Examination of cell wall patterns suggested that misoriented cell divisions were largely responsible for the irregular cell patterns. In pok1/pok2 double mutant embryos misplaced cell walls were observed as early as the octant stage of embryogenesis. Throughout embryogenesis the mispositioning of cell walls continues eventually giving rise to slightly misshapen mature embryos with a stubby appearance compared to wild-type. However incomplete cell walls and wall stubs a common feature of cytokinesis-defective mutants were not observed in Toluidine blue-stained sections of double mutant embryos. FUNCTION: Involved in the spatial control of cytokinesis by a proper phragmoplast guidance. Localizes TAN to the cortical division sites (CDS) during cytokinesis via direct binding. {ECO:0000269|PubMed:16682350, ECO:0000269|PubMed:21172800}.,FUNCTION: Involved in the spatial control of cytokinesis by a proper phragmoplast guidance. {ECO:0000269|PubMed:16682350}. ARA:GQT-1801-MONOMER;,ARA:GQT-1917-MONOMER; R-ATH-6811434;R-ATH-983189; 233879,142668,315062,234813,234938 Kinesin-like protein KIN-12C (Phragmoplast orienting kinesin 1),Kinesin-like protein KIN-12E,Kinesin-like protein KIN-12D (Phragmoplast orienting kinesin 2),Phragmoplast orienting kinesin 1 kinesin complex [GO:0005871]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; cytokinesis by cell plate formation [GO:0000911]; microtubule-based movement [GO:0007018]; mitotic cytokinesis [GO:0000281],kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] TISSUE SPECIFICITY: Expressed in tissues enriched in dividing cells, such as root meristems, root primordia, and leaf primordia/young leaves. {ECO:0000269|PubMed:16682350}. locus:2089000;,locus:2097184;,locus:2085844; AT3G17360,AT3G44050,AT3G19050 kinesin motor domain containing protein Kinesin-like protein KIN-12F,Kinesin-like protein KIN-12E,Kinesin-like protein KIN-12G B9GE13,B9FUF9,Q75LL2 KN12F_ORYSJ,KN12E_ORYSJ,KN12G_ORYSJ KIN12F Os12g0590500 LOC_Os12g39980 OsJ_36705,KIN12E Os07g0638000 LOC_Os07g44400 OJ1340_C08.103 OsJ_25289,KIN12G Os03g0750200/Os03g0750300 LOC_Os03g53920 OsJ_12582 OSJNBa0047E24.25 ENOG411DSBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DPMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0227300 protein (Receptor protein kinase CRINKLY4-like protein) Q8H2M1 Q8H2M1_ORYSJ OSJNBa0066H10.132 Os07g0227300 OSNPB_070227300 ENOG411DPMZ A0A1P8AZS5,A8MQJ8 A0A1P8AZS5_ARATH,A8MQJ8_ARATH Glucose-induced degradation-like protein Long hypocotyl under far-red light-N. Chua-2001 27962,24077 Glucose-induced degradation-like protein cytoplasmic vesicle [GO:0031410]; extrinsic component of membrane [GO:0019898]; GID complex [GO:0034657]; vacuole [GO:0005773]; negative regulation of gluconeogenesis [GO:0045721]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process in the vacuole [GO:0007039]; protein targeting to vacuole [GO:0006623] locus:2040761; AT2G37680 Vacuolar import and degradation protein Expressed protein (Os03g0679000 protein) (cDNA clone:006-209-D10, full insert sequence),Os01g0144200 protein (cDNA clone:006-202-F03, full insert sequence) Q10F72,Q5ZBM4 Q10F72_ORYSJ,Q5ZBM4_ORYSJ Os03g0679000 LOC_Os03g47550 Os03g0679000 OsJ_12103 OSNPB_030679000,Os01g0144200 Os01g0144200 OsJ_00338 OSNPB_010144200 P0024G09.31 ENOG411DSB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0714900 protein (cDNA clone:001-118-F01, full insert sequence) Q5Z9Q3 Q5Z9Q3_ORYSJ Os06g0714900 OSNPB_060714900 P0481E08.9 ENOG411DSB6 B4F7N8,B4F7Q4,A0A1P8BG97,F4JWN4 B4F7N8_ARATH,B4F7Q4_ARATH,A0A1P8BG97_ARATH,F4JWN4_ARATH At5g18420 (CCR4-NOT transcription complex subunit),CCR4-NOT transcription complex subunit 50446,50318,39408,50074 At5g18420 (CCR4-NOT transcription complex subunit),CCR4-NOT transcription complex subunit CCR4-NOT complex [GO:0030014] locus:2146208; AT5G18420 UPF0760 protein Os12g0197900 protein (Fragment) A0A0P0Y7W5 A0A0P0Y7W5_ORYSJ Os12g0197900 OSNPB_120197900 ENOG411DSB9 P0C945,Q3ED78,A0A1P8AUH0,A0A1P8AUH4,A0A1P8AUJ2,A0A1P8AUF2 Y1158_ARATH,C3H7_ARATH,A0A1P8AUH0_ARATH,A0A1P8AUH4_ARATH,A0A1P8AUJ2_ARATH,A0A1P8AUF2_ARATH Uncharacterized protein At1g21580,Zinc finger CCCH domain-containing protein 7 (AtC3H7) (EC 3.1.-.-) (AtSmicl),Zinc finger C-x8-C-x5-C-x3-H type family protein FUNCTION: Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. 3.1.-.- 185017,53768,225157,226160,225804,225212 Uncharacterized protein At1g21580,Zinc finger CCCH domain-containing protein 7 (AtC3H7) (EC 3.1.-.-) (AtSmicl),Zinc finger C-x8-C-x5-C-x3-H type family protein mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; endoribonuclease activity [GO:0004521]; RNA binding [GO:0003723]; mRNA polyadenylation [GO:0006378]; pre-mRNA cleavage required for polyadenylation [GO:0098789],mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; DNA binding [GO:0003677]; endoribonuclease activity [GO:0004521]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; mRNA polyadenylation [GO:0006378]; poly(A)+ mRNA export from nucleus [GO:0016973],metal ion binding [GO:0046872] AT1G21580,AT1G21570 ZnF_C3H1 NA NA NA NA NA NA NA ENOG411E8T9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE701 protein (Os07g0194350 protein) (Os07g0194400 protein) A8R3R3 A8R3R3_ORYSJ OsCLE701 Os07g0194400 Os07g0194350 OSNPB_070194400 ENOG411E8T8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of NA NA NA NA NA NA NA ENOG411E8T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CONTAINS InterPro DOMAIN s Cyclin-like F-box (InterPro IPR001810) F-box associated type 3 (InterPro IPR013187) F-box associated type 1 (InterPro IPR017451) NA NA NA NA NA NA NA ENOG411E8T2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8T1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE404 protein (OSJNBa0011F23.12 protein) (Os04g0658800 protein) (cDNA clone:002-176-A04, full insert sequence) Q7XN80 Q7XN80_ORYSJ OsCLE404 Os04g0658800 OsJ_16479 OSJNBa0011F23.12 OSNPB_040658800 ENOG411E8T7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger family protein, expressed (Os03g0164200 protein) (cDNA clone:001-125-F05, full insert sequence) (cDNA clone:J033094A22, full insert sequence),Os02g0467300 protein,Os05g0134500 protein Q10RC4,Q6K7B3,A0A0P0WHK9 Q10RC4_ORYSJ,Q6K7B3_ORYSJ,A0A0P0WHK9_ORYSJ LOC_Os03g06840 Os03g0164200 OSNPB_030164200,Os02g0467300 Os02g0467300 OJ1342_D02.26 OSNPB_020467300,Os05g0134500 OSNPB_050134500 ENOG411E8T6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E8T5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8T4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411E8TK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E8TJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8TI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8TH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family NA NA NA NA NA NA NA ENOG411E8TN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8TM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8TC Q9FIY6 Q9FIY6_ARATH C2H2 and C2HC zinc fingers superfamily protein (Uncharacterized protein At5g43540) 15347 C2H2 and C2HC zinc fingers superfamily protein (Uncharacterized protein At5g43540) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2158367; AT5G43540 Zinc finger C2H2 type family protein NA NA NA NA NA NA NA ENOG411E8TB Q1G3V5 Q1G3V5_ARATH Uncharacterized protein 9474 Uncharacterized protein locus:4515102516; AT1G11112 NA NA NA NA NA NA NA NA ENOG411E8TA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0020P07.9 protein (Os04g0119000 protein) (cDNA clone:001-045-G06, full insert sequence) (cDNA clone:J013058D11, full insert sequence) Q7XTJ5 Q7XTJ5_ORYSJ Os04g0119000 OsJ_13582 OSJNBa0020P07.9 OSNPB_040119000 ENOG411E8TG Q6AWW7 Q6AWW7_ARATH At5g08780 (Winged-helix DNA-binding transcription factor family protein) 51321 At5g08780 (Winged-helix DNA-binding transcription factor family protein) nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; nucleosome assembly [GO:0006334] locus:504956342; AT5G08780 histone H1 H5 family protein NA NA NA NA NA NA NA ENOG411E8TF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8TE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: kiaa1033 NA NA NA NA NA NA NA ENOG411E8TD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative carnitine deficiency-associated protein NA NA NA NA NA NA NA ENOG411E8TZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8TY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411E8TX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0193350 protein,Os05g0192500 protein (Fragment) B9FMW6,A0A0P0WIS6 B9FMW6_ORYSJ,A0A0P0WIS6_ORYSJ Os05g0193350 OsJ_17417 OSNPB_050193350,Os05g0192500 OSNPB_050192500 ENOG411E8TS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8TR Q9LDN8 Q9LDN8_ARATH AT3g15280/K7L4_8 16084 AT3g15280/K7L4_8 locus:2087110; AT3G15280 NA NA NA NA NA NA NA NA ENOG411E8TQ Q1G3R7 Q1G3R7_ARATH Uncharacterized protein 9512 Uncharacterized protein locus:4515102978; AT2G41342 NA NA NA NA NA NA NA NA ENOG411E8TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein interaction domain containing protein NA NA NA NA NA NA NA ENOG411E8TW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Permease family NA NA NA NA NA NA NA ENOG411E8TV A7REG6,Q3E7V3,Q3EC71 A7REG6_ARATH,Q3E7V3_ARATH,Q3EC71_ARATH Prolamin-like protein (DUF784),ECA1 gametogenesis family protein (DUF784) 17031,16843,17540 Prolamin-like protein (DUF784),ECA1 gametogenesis family protein (DUF784) locus:4010713614;,locus:504956020;,locus:504956019; AT2G04031,AT2G04041,AT2G04037 Pfam:DUF784 NA NA NA NA NA NA NA ENOG411E8TU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0456100 protein (Unknow protein) Q60EL8 Q60EL8_ORYSJ Os05g0456100 OJ1651_D06.15 OSNPB_050456100 ENOG411E8TT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: galactosyltransferase NA NA NA NA NA NA NA ENOG411DSFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal peptide binding domain NA NA NA NA NA NA NA ENOG411E3JM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411E3JJ F4P12_170 Q9LFH1,F4JAF4 Q9LFH1_ARATH,F4JAF4_ARATH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (At3g53470) (Uncharacterized protein At3g53470/F4P12_170) (Uncharacterized protein F4P12_170),2,3-bisphosphoglycerate-independent phosphoglycerate mutase 15376,15447 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (At3g53470) (Uncharacterized protein At3g53470/F4P12_170) (Uncharacterized protein F4P12_170),2,3-bisphosphoglycerate-independent phosphoglycerate mutase integral component of membrane [GO:0016021],chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2084071; AT3G53470 NA Expressed protein (Os03g0285100 protein) (cDNA clone:J023110L01, full insert sequence) Q10N24 Q10N24_ORYSJ LOC_Os03g17660 Os03g0285100 OsJ_10407 OSNPB_030285100 ENOG411E3JK NRPB6B,NRPB6A Q9SJ96,Q9FJ98 RPB6B_ARATH,RPD6A_ARATH DNA-directed RNA polymerases II and V subunit 6B,DNA-directed RNA polymerases II, IV and V subunit 6A (RNA polymerase Rpb6) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerase V which mediates RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 16740,16652 DNA-directed RNA polymerases II and V subunit 6B,DNA-directed RNA polymerases II, IV and V subunit 6A (RNA polymerase Rpb6) DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383],DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383] locus:2049213;,locus:2173058; AT2G04630,AT5G51940 DNA-directed RNA polymerases I II and III Os07g0463100 protein (Putative DNA-directed RNA polymerase Iia) (cDNA clone:J033097N04, full insert sequence),DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed (Os03g0586600 protein) (Putative DNA-directed RNA polymerase II subunit) (cDNA clone:J023067P18, full insert sequence),Os08g0426000 protein (Fragment) Q8LI69,Q6F2V1,A0A0N7KPV9 Q8LI69_ORYSJ,Q6F2V1_ORYSJ,A0A0N7KPV9_ORYSJ OJ1634_H04.114 Os07g0463100 OSNPB_070463100,OSJNBa0010D22.24 LOC_Os03g38960 Os03g0586600 OsJ_11577 OSNPB_030586600,Os08g0426000 OSNPB_080426000 ENOG411E3JH PDCB5 Q9M2K6,A0A1I9LSI7 PDCB5_ARATH,A0A1I9LSI7_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 5 (AtPDCB5) (Glucan endo-1,3-beta-glucosidase-like protein 1),Plasmodesmata callose-binding protein 5 19171,27751 PLASMODESMATA CALLOSE-BINDING PROTEIN 5 (AtPDCB5) (Glucan endo-1,3-beta-glucosidase-like protein 1),Plasmodesmata callose-binding protein 5 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasmodesma [GO:0009506]; (1->3)-beta-D-glucan binding [GO:0001872]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247],integral component of membrane [GO:0016021] locus:2085410; AT3G58100 glucan endo-13-beta-glucosidase-like protein Elicitor inducible beta-1,3-glucanase-like (Os06g0537700 protein) Q5Z6U7 Q5Z6U7_ORYSJ Os06g0537700 Os06g0537700 OSNPB_060537700 P0551A03.26 ENOG411E3JF Q6DSR9,F4ITW5,F4ITW3 Q6DSR9_ARATH,F4ITW5_ARATH,F4ITW3_ARATH Gag-Pol polyprotein/retrotransposon 23348,16450,29016 Gag-Pol polyprotein/retrotransposon integral component of membrane [GO:0016021] locus:1006230170; AT2G38695 NA Os09g0442800 protein (cDNA clone:006-303-F02, full insert sequence) Q67UT7 Q67UT7_ORYSJ P0046G12.28-1 Os09g0442800 OsJ_29536 OSNPB_090442800 ENOG411E3JD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SOUL heme-binding protein NA NA NA NA NA NA NA ENOG411E3JC MOP10 Q9FFG5 Q9FFG5_ARATH At5g05500 (Pollen Ole e 1 allergen and extensin family protein) 20170 At5g05500 (Pollen Ole e 1 allergen and extensin family protein) vesicle [GO:0031982]; root hair elongation [GO:0048767]; unidimensional cell growth [GO:0009826] locus:2169682; AT5G05500 allergen and extensin family protein Os01g0164300 protein A2ZPL6 A2ZPL6_ORYSJ Os01g0164300 OsJ_00493 OSNPB_010164300 ENOG411E3JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) Os05g0356800 protein (cDNA clone:J033105G24, full insert sequence) Q5W6Y2 Q5W6Y2_ORYSJ Os05g0356800 Os05g0356800 OSJNBa0036C12.15 OSNPB_050356800 ENOG411E3JX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copper amine oxidase N2 domain Amine oxidase (EC 1.4.3.-) A0A0P0X7R7 A0A0P0X7R7_ORYSJ Os07g0572050 OSNPB_070572050 ENOG411E3JY WRKY48 Q9FGZ4 WRK48_ARATH Probable WRKY transcription factor 48 (WRKY DNA-binding protein 48) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 44726 Probable WRKY transcription factor 48 (WRKY DNA-binding protein 48) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; positive regulation of transcription, DNA-templated [GO:0045893]; response to bacterium [GO:0009617]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2157829; AT5G49520 WRKY transcription factor NA NA NA NA NA NA NA ENOG411E3JW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0140300 protein A0A0P0WHP9 A0A0P0WHP9_ORYSJ Os05g0140300 OSNPB_050140300 ENOG411E3JR Q9M1Q1,Q9C7X8,F4I537 FB215_ARATH,FBL33_ARATH,F4I537_ARATH F-box protein At3g62230,Putative F-box/LRR-repeat protein At1g56400,F-box family protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 53142,55351,50331 F-box protein At3g62230,Putative F-box/LRR-repeat protein At1g56400,F-box family protein nucleus [GO:0005634]; pollen sperm cell differentiation [GO:0048235]; protein ubiquitination [GO:0016567] locus:2098088;,locus:2010708; AT3G62230,AT1G56400 NA NA NA NA NA NA NA NA ENOG411E3JS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os06g0248200 protein,Os06g0698400 protein (Fragment) A0A0P0WUL0,A0A0P0X0C9 A0A0P0WUL0_ORYSJ,A0A0P0X0C9_ORYSJ Os06g0248200 OSNPB_060248200,Os06g0698400 OSNPB_060698400 ENOG411E3JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein Os07g0673400 protein (Universal stress protein USP1-like protein) (cDNA clone:001-125-F10, full insert sequence),Os07g0673400 protein,Os03g0344166 protein Q8H454,A0A0P0XAH3,A0A0N7KH89 Q8H454_ORYSJ,A0A0P0XAH3_ORYSJ,A0A0N7KH89_ORYSJ P0470D12.142-1 Os07g0673400 OsJ_25543 OSNPB_070673400,Os07g0673400 OSNPB_070673400,Os03g0344166 OSNPB_030344166 ENOG411E3JQ AR781 O48720,F4IUL5 O48720_ARATH,F4IUL5_ARATH AR781 (AR781, pheromone receptor-like protein (DUF1645)) (AR781, similar to yeast pheromone receptor),AR781, pheromone receptor-like protein (DUF1645) 36205,33121 AR781 (AR781, pheromone receptor-like protein (DUF1645)) (AR781, similar to yeast pheromone receptor),AR781, pheromone receptor-like protein (DUF1645) plasma membrane [GO:0005886] locus:2066236; AT2G26530 Protein of unknown function (DUF1645) NA NA NA NA NA NA NA ENOG411E3J9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: phytochrome kinase Os10g0406900 protein A0A0P0XTY6 A0A0P0XTY6_ORYSJ Os10g0406900 OSNPB_100406900 ENOG411E3J6 TIM14-3 Q9LYY2,A0A1P8BEB9 TI143_ARATH,A0A1P8BEB9_ARATH Mitochondrial import inner membrane translocase subunit TIM14-3 (Chaperone DnaJ-domain containing protein 3),Chaperone DnaJ-domain superfamily protein FUNCTION: Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. {ECO:0000250}. 12064,16838 Mitochondrial import inner membrane translocase subunit TIM14-3 (Chaperone DnaJ-domain containing protein 3),Chaperone DnaJ-domain superfamily protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743],integral component of membrane [GO:0016021] locus:2143488; AT5G03030 Mitochondrial import inner membrane translocase subunit Os03g0776900 protein (Fragment) A0A0P0W464 A0A0P0W464_ORYSJ Os03g0776900 OSNPB_030776900 ENOG411E3J2 Q9LW11 Q9LW11_ARATH At3g15680 (Ran BP2/NZF zinc finger-like superfamily protein) (Zinc finger protein-like Ser/Thr protein kinase-like protein) 17563 At3g15680 (Ran BP2/NZF zinc finger-like superfamily protein) (Zinc finger protein-like Ser/Thr protein kinase-like protein) kinase activity [GO:0016301]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729] locus:2093317; AT3G15680 zinc finger (Ran-binding) family protein NA NA NA NA NA NA NA ENOG411E3J0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ArfGAP with FG repeats Os05g0534800 protein (Fragment) A0A0N7KL54 A0A0N7KL54_ORYSJ Os05g0534800 OSNPB_050534800 ENOG411E3J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium-binding protein that binds and activates CAMK1 a calcium calmodulin-dependent kinase Calmodulin-like protein 1 (OsCAM61) Q8S1Y9 CML1_ORYSJ CML1 Os01g0810300 LOC_Os01g59530 OsJ_003721 P0468B07.35 FUNCTION: Calcium-binding protein that binds and activates CAMK1, a calcium/calmodulin-dependent kinase. {ECO:0000250}. ENOG411EC44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SERPIN NA NA NA NA NA NA NA ENOG411EC47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Holliday junction DNA helicase ruvB N-terminus NA NA NA NA NA NA NA ENOG411EC48 T2J13.180,MRO11.11 Q9SMT6,Q9FF95,A0A178VAW3 Q9SMT6_ARATH,Q9FF95_ARATH,A0A178VAW3_ARATH Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein T2J13.180),At5g23850 (Glycosyltransferase) (O-glucosyltransferase rumi-like protein (DUF821)) (Similarity to unknown protein) (Uncharacterized protein At5g23850),O-glucosyltransferase rumi-like protein (DUF821) 62758,62587,63460 Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein T2J13.180),At5g23850 (Glycosyltransferase) (O-glucosyltransferase rumi-like protein (DUF821)) (Similarity to unknown protein) (Uncharacterized protein At5g23850),O-glucosyltransferase rumi-like protein (DUF821) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664],endomembrane system [GO:0012505]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2101358;,locus:2172818; AT3G48980,AT5G23850 CAP10 NA NA NA NA NA NA NA ENOG411EC49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os06g0238550 protein A0A0N7KLU3 A0A0N7KLU3_ORYSJ Os06g0238550 OSNPB_060238550 ENOG411EC4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein family-like (Os08g0462300 protein),Os08g0267800 protein,Os08g0267600 protein,Os08g0267000 protein,Os08g0267700 protein Q6YUC1,Q6ZAY8,A0A0N7KPK0,A0A0P0XDQ0,A0A0P0XDM3 Q6YUC1_ORYSJ,Q6ZAY8_ORYSJ,A0A0N7KPK0_ORYSJ,A0A0P0XDQ0_ORYSJ,A0A0P0XDM3_ORYSJ Os08g0462300 Os08g0462300 B1111C03.16 B1116H04.4 OSNPB_080462300,Os08g0267800 Os08g0267800 OJ1540_G08.5 OsJ_26674 OSNPB_080267800,Os08g0267600 OSNPB_080267600,Os08g0267000 OSNPB_080267000,Os08g0267700 OSNPB_080267700 ENOG411EC4I MNJ7.18 Q9FGJ8,A0A1P8BBT2 Q9FGJ8_ARATH,A0A1P8BBT2_ARATH Heat shock protein HSP20/alpha crystallin family (Uncharacterized protein At5g47590) (Uncharacterized protein At5g47590; MNJ7.18),Heat shock protein HSP20/alpha crystallin family 28945,21742 Heat shock protein HSP20/alpha crystallin family (Uncharacterized protein At5g47590) (Uncharacterized protein At5g47590; MNJ7.18),Heat shock protein HSP20/alpha crystallin family locus:2169033; AT5G47590 heat- shock NA NA NA NA NA NA NA ENOG411EC4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Regulator of nonsense transcripts NA NA NA NA NA NA NA ENOG411EC4K LBD39 Q9SZE8 LBD39_ARATH LOB domain-containing protein 39 (ASYMMETRIC LEAVES 2-like protein 41) (AS2-like protein 41) Elevated anthocyanin levels in response to nitrogen-W. Scheible-2009 26612 LOB domain-containing protein 39 (ASYMMETRIC LEAVES 2-like protein 41) (AS2-like protein 41) TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. locus:2120071; AT4G37540 Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411EC4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EAWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP thereby influencing cAMP-dependent processes (By similarity) NA NA NA NA NA NA NA ENOG411EAWW PBL25 Q9LRY1 PBL25_ARATH Probable serine/threonine-protein kinase PBL25 (EC 2.7.11.1) (PBS1-like protein 25) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 42427 Probable serine/threonine-protein kinase PBL25 (EC 2.7.11.1) (PBS1-like protein 25) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response [GO:0006952] locus:2087263; AT3G24790 STYKc NA NA NA NA NA NA NA ENOG411EAWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance NA NA NA NA NA NA NA ENOG411EAWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EAWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipopolysaccharide kinase (Kdo/WaaP) family Mitogen-activated protein kinase 8 (MAP kinase 8) (EC 2.7.11.24) (OsWJUMK1) (Wound- and JA-uninducible MAP kinase 1),Mitogen-activated protein kinase 7 (MAP kinase 7) (EC 2.7.11.24) (MAP kinase 6) (OsMAPK6),Mitogen-activated protein kinase (EC 2.7.11.24),Os01g0665200 protein Q5SN53,Q67C40,Q0JKM0,Q0DFW7,A0A0P0V6B3,A0A0N7KDG7 MPK8_ORYSJ,MPK7_ORYSJ,Q0JKM0_ORYSJ,Q0DFW7_ORYSJ,A0A0P0V6B3_ORYSJ,A0A0N7KDG7_ORYSJ MPK8 WJUMK1 Os01g0665200 LOC_Os01g47530 P0003E08.19-1,MPK7 MAPK6 Os05g0566400 LOC_Os05g49140 OJ1781_H11.5 OJ1781_H11.6,Os01g0665200 Os01g0665200 OsJ_02925 OSNPB_010665200,Os05g0566400 Os05g0566400 OSNPB_050566400,Os01g0665200 OSNPB_010665200 ENOG411EAWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EAWQ dl3580c,MDF20.22,MDF20.24,MDF20.21,F3H7.4,MZA15.6,F3A4.90,MZA15.8,68402.TRNA-PRO-3 O64713,O64512,Q9LZ89,O23361,Q9FM61,O80707,O64716,Q9SYA7,Q9LZ90,Q9SVR4,Q9FM59,Q9FM62,Q9ZPU3,Q9LRV1,O04208,O64513,Q8S8J8,Q9ZSB4,Q9LTL7,Q9C704,Q0WSX0,Q9LK82,Q9LNZ0,O80692,Q9LZ91,Q9MAG7,Q9FIQ9,Q9SN17,Q8S8R6,Q9LZ92,Q9FIQ8,A0A1P8AN25,A0A1P8B213,A0A1P8AMN4,F4HRB9,F4IG40,F4IR90,F4IR95,F4KFA3,A0A1P8AN16,F4JLN1,F4IEE2,F4IFE3,F4IEE1 O64713_ARATH,O64512_ARATH,Q9LZ89_ARATH,O23361_ARATH,Q9FM61_ARATH,O80707_ARATH,O64716_ARATH,Q9SYA7_ARATH,Q9LZ90_ARATH,Q9SVR4_ARATH,Q9FM59_ARATH,Q9FM62_ARATH,Q9ZPU3_ARATH,Q9LRV1_ARATH,O04208_ARATH,O64513_ARATH,Q8S8J8_ARATH,Q9ZSB4_ARATH,Q9LTL7_ARATH,Q9C704_ARATH,Q0WSX0_ARATH,Q9LK82_ARATH,Q9LNZ0_ARATH,O80692_ARATH,Q9LZ91_ARATH,Q9MAG7_ARATH,Q9FIQ9_ARATH,Q9SN17_ARATH,Q8S8R6_ARATH,Q9LZ92_ARATH,Q9FIQ8_ARATH,A0A1P8AN25_ARATH,A0A1P8B213_ARATH,A0A1P8AMN4_ARATH,F4HRB9_ARATH,F4IG40_ARATH,F4IR90_ARATH,F4IR95_ARATH,F4KFA3_ARATH,A0A1P8AN16_ARATH,F4JLN1_ARATH,F4IEE2_ARATH,F4IFE3_ARATH,F4IEE1_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02640),Cysteine/Histidine-rich C1 domain family protein (DC1 domain-containing protein) (Uncharacterized protein At2g02700),DC1 domain-containing protein (Uncharacterized protein T1E22_120),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g15070) (Uncharacterized protein dl3580c),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein-like),Cysteine/Histidine-rich C1 domain family protein (F8K4.22),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02610),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T13M11.7),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T1E22_110),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g13130) (Uncharacterized protein F17N18.20),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g13950),CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g40050),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02690),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g13900) (Uncharacterized protein At2g13900/F17L24.4),Cysteine/Histidine-rich C1 domain family protein (F3H7.4 protein) (Uncharacterized protein AT4g10560) (Uncharacterized protein T4F9.20),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At3g26240),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F28G11.16),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02620),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein),Cysteine/Histidine-rich C1 domain family protein (F9C16.28),Cysteine/Histidine-rich C1 domain family protein (F8K4.5 protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T1E22_100),Cysteine/Histidine-rich C1 domain family protein (F12M16.24),CHP-rich zinc finger protein (Protein kinase C-like zinc finger protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F3A4.90),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02680),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T1E22_90),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein),Cysteine/Histidine-rich C1 domain family protein,Cysteine/histidine-rich C1 domain protein 72459,56898,38915,102250,79298,85956,72152,46698,75278,89626,66712,80732,59387,78806,70711,57588,76823,81397,106240,83301,58390,112242,84112,93001,72999,76886,34539,88291,74264,75847,39198,79684,66836,71173,30822,43324,50829,71016,116189,79390,79367,68068,27069,66461 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02640),Cysteine/Histidine-rich C1 domain family protein (DC1 domain-containing protein) (Uncharacterized protein At2g02700),DC1 domain-containing protein (Uncharacterized protein T1E22_120),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g15070) (Uncharacterized protein dl3580c),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein-like),Cysteine/Histidine-rich C1 domain family protein (F8K4.22),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02610),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T13M11.7),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T1E22_110),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g13130) (Uncharacterized protein F17N18.20),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g13950),CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g40050),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02690),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g13900) (Uncharacterized protein At2g13900/F17L24.4),Cysteine/Histidine-rich C1 domain family protein (F3H7.4 protein) (Uncharacterized protein AT4g10560) (Uncharacterized protein T4F9.20),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At3g26240),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F28G11.16),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02620),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein),Cysteine/Histidine-rich C1 domain family protein (F9C16.28),Cysteine/Histidine-rich C1 domain family protein (F8K4.5 protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T1E22_100),Cysteine/Histidine-rich C1 domain family protein (F12M16.24),CHP-rich zinc finger protein (Protein kinase C-like zinc finger protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F3A4.90),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g02680),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T1E22_90),Cysteine/Histidine-rich C1 domain family protein (Putative CHP-rich zinc finger protein),Cysteine/Histidine-rich C1 domain family protein,Cysteine/histidine-rich C1 domain protein metal ion binding [GO:0046872],integral component of membrane [GO:0016021],chloroplast envelope [GO:0009941]; metal ion binding [GO:0046872],intracellular [GO:0005622]; intracellular signal transduction [GO:0035556],nucleus [GO:0005634]; response to cold [GO:0009409],intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556],embryo development ending in seed dormancy [GO:0009793],kinase activity [GO:0016301]; metal ion binding [GO:0046872] locus:2065335;,locus:2058857;,locus:2180112;,locus:2129645;,locus:2162142;,locus:2036838;,locus:2065289;,locus:2195728;,locus:2180102;,locus:2119295;,locus:2162172;,locus:2162127;,locus:2053443;,locus:2088837;,locus:2061181;,locus:2043766;,locus:2139192;,locus:2093566;,locus:2028977;,locus:2065274;,locus:2156228;,locus:2037174;,locus:2036888;,locus:2180177;,locus:2009635;,locus:2178530;,locus:2083158;,locus:2058801;,locus:2180167;,locus:2178540;,locus:1005716674;,locus:2065259;,locus:2058867;,locus:2831854;,locus:2122824;,locus:2037144;,locus:1006230020;,locus:2037149; AT2G02640,AT2G02700,AT5G02360,AT4G15070,AT5G55780,AT1G62030,AT2G02610,AT1G61710,AT5G02350,AT4G13130,AT5G55800,AT5G55770,AT2G13950,AT3G26550,AT2G40050,AT2G13900,AT4G10560,AT3G26240,AT1G66440,AT2G02620,AT5G48320,AT1G44050,AT1G61840,AT5G02340,AT1G53340,AT5G46660,AT3G50010,AT2G02680,AT5G02330,AT5G46670,AT1G45243,AT2G02630,AT2G02690,AT5G03360,AT4G10370,AT1G44030,AT2G13895,AT1G44020 domain-containing protein NA NA NA NA NA NA NA ENOG411EAWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EAWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: domain protein NA NA NA NA NA NA NA ENOG411EAWM Q9SIU5,Q9SUU4 Q9SIU5_ARATH,Q9SUU4_ARATH Expressed protein (Sugar phosphate exchanger, putative (DUF506)),AT4g32480/F8B4_180 (Sugar phosphate exchanger, putative (DUF506)) (Uncharacterized protein AT4g32480) (Uncharacterized protein F8B4.180) 33203,32593 Expressed protein (Sugar phosphate exchanger, putative (DUF506)),AT4g32480/F8B4_180 (Sugar phosphate exchanger, putative (DUF506)) (Uncharacterized protein AT4g32480) (Uncharacterized protein F8B4.180) chloroplast [GO:0009507] locus:2046006;,locus:2127856; AT2G20670,AT4G32480 Protein of unknown function (DUF506) NA NA NA NA NA NA NA ENOG411EAWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EAWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os03g0850200 protein A0A0P0W5G8 A0A0P0W5G8_ORYSJ Os03g0850200 OSNPB_030850200 ENOG411EAWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EAWH BAG3,BAG2 Q9LYP4,Q0WPX7,B3H4L7,A0A1R7T3J8,A0A1R7T3J7 BAG3_ARATH,BAG2_ARATH,B3H4L7_ARATH,A0A1R7T3J8_ARATH,A0A1R7T3J7_ARATH BAG family molecular chaperone regulator 3 (Bcl-2-associated athanogene 3),BAG family molecular chaperone regulator 2 (Bcl-2-associated athanogene 2),BCL-2-associated athanogene 2 FUNCTION: Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses. {ECO:0000250}. 34244,32263,16556,23939,23042 BAG family molecular chaperone regulator 3 (Bcl-2-associated athanogene 3),BAG family molecular chaperone regulator 2 (Bcl-2-associated athanogene 2),BCL-2-associated athanogene 2 chaperone binding [GO:0051087] locus:2182900;,locus:2174038; AT5G07220,AT5G62100 BCL-2-associated athanogene 2 NA NA NA NA NA NA NA ENOG411EAWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plus-3 domain NA NA NA NA NA NA NA ENOG411EAWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S11 NA NA NA NA NA NA NA ENOG411EAWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain NA NA NA NA NA NA NA ENOG411EAWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF3448 NA NA NA NA NA NA NA ENOG411EAWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NOL1/NOP2/sun family NA NA NA NA NA NA NA ENOG411EAWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldehyde dehydrogenase family NA NA NA NA NA NA NA ENOG411EAW9 TULP9,TULP11,TLP11,TLP9 Q9SQU1,Q6NPQ1,A0A1P8B9V1,A0A1I9LQ32 TLP9_ARATH,TLP11_ARATH,A0A1P8B9V1_ARATH,A0A1I9LQ32_ARATH Tubby-like F-box protein 9 (AtTLP9),Tubby-like F-box protein 11 (AtTLP11),Tubby like protein 11,Tubby-like protein 9 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development. {ECO:0000269|PubMed:15064372}. PATHWAY: Protein modification; protein ubiquitination. 42310,43051,32901,32050 Tubby-like F-box protein 9 (AtTLP9),Tubby-like F-box protein 11 (AtTLP11),Tubby like protein 11,Tubby-like protein 9 phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; protein ubiquitination [GO:0016567]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620],phosphatidylinositol binding [GO:0035091]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed early during seed germination, especially in the preemergent radicle. {ECO:0000269|PubMed:15064372}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15064372}. locus:2081101;,locus:2180034; AT3G06380,AT5G18680 Tub family NA NA NA NA NA NA NA ENOG411EAW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EAW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAW6 MSI17.4 Q9FKN2 Q9FKN2_ARATH Uncharacterized protein 21289 Uncharacterized protein locus:2173278; AT5G38310 NA NA NA NA NA NA NA NA ENOG411EAW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tub family Tubby-like F-box protein 6 (OsTLP6) (Tubby-like F-box protein 14) (OsTLP14),Tubby-like F-box protein 11 (OsTLP11) (Tubby-like F-box protein 7) (OsTLP7),Os03g0351400 protein (Fragment),Os03g0348500 protein Q10LG8,Q8H485,A0A0P0VYB9,A0A0P0VY81 TLP6_ORYSJ,TLP11_ORYSJ,A0A0P0VYB9_ORYSJ,A0A0P0VY81_ORYSJ TULP6 TULP14 Os03g0351400 LOC_Os03g22800 OsJ_010398,TULP11 TULP7 Os07g0667000 LOC_Os07g47110 OsJ_25493 P0450A04.125,Os03g0351400 OSNPB_030351400,Os03g0348500 OSNPB_030348500 ENOG411EAW4 Q9SYK7,Q9SYK6 Q9SYK7_ARATH,Q9SYK6_ARATH F3F20.11 protein (Pectin lyase-like superfamily protein),F3F20.10 protein (Pectin lyase-like superfamily protein) ARA:AT1G05660-MONOMER;,ARA:AT1G05650-MONOMER; 41854,41571 F3F20.11 protein (Pectin lyase-like superfamily protein),F3F20.10 protein (Pectin lyase-like superfamily protein) extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2031963;,locus:2031953; AT1G05660,AT1G05650 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411EAW3 F4JKW7 F4JKW7_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein 99687 P-loop containing nucleoside triphosphate hydrolases superfamily protein GTP binding [GO:0005525]; hydrolase activity [GO:0016787] locus:2130784; AT4G15810 AIG1 family NA NA NA NA NA NA NA ENOG411EAW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411EAW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EG3Q HSP14.7 Q6NLV0 HS147_ARATH 14.7 kDa heat shock protein (AtHsp14.7) 14687 14.7 kDa heat shock protein (AtHsp14.7) cytoplasm [GO:0005737] locus:2169048; AT5G47600 heat- shock NA NA NA NA NA NA NA ENOG411EG3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0451000 protein Q0JCS9 Q0JCS9_ORYSJ Os04g0451000 Os04g0451000 OSNPB_040451000 ENOG411EG3S EDA21 Q56XC2 DEF37_ARATH Defensin-like protein 37 (Protein EMBRYO SAC DEVELOPMENT ARREST 21) 9372 Defensin-like protein 37 (Protein EMBRYO SAC DEVELOPMENT ARREST 21) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] AT4G13235 embryo sac development arrest 21 NA NA NA NA NA NA NA ENOG411EG3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Translation initiation factor SUI1 Os04g0627900 protein (Fragment) Q0J9W8 Q0J9W8_ORYSJ Os04g0627900 Os04g0627900 OSNPB_040627900 ENOG411EG3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Vasohibin NA NA NA NA NA NA NA ENOG411EG3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EG3C Q8L9A7 Q8L9A7_ARATH At4g27580 (Phosphatidylinositol transfer SFH5-like protein) (Uncharacterized protein At4g27575) 10982 At4g27580 (Phosphatidylinositol transfer SFH5-like protein) (Uncharacterized protein At4g27575) cell wall [GO:0005618]; mitochondrion [GO:0005739] locus:2137752; AT4G27580 Inherit from KOG: stomatin-like protein NA NA NA NA NA NA NA ENOG411EG3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0255200 protein,Os01g0186400 protein Q5NBS6,Q5VRX0 Q5NBS6_ORYSJ,Q5VRX0_ORYSJ Os01g0255200 OsJ_01144 OsJ_01148 OSNPB_010255200 P0705D01.39 P0711E10.29,P0510F03.30 Os01g0186400 OSNPB_010186400 ENOG411EG3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EG3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0502700 protein (Fragment) A0A0P0Y3D1 A0A0P0Y3D1_ORYSJ Os11g0502700 OSNPB_110502700 ENOG411EG30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411EG33 T26J12.17 O23119 O23119_ARATH At1g23050 (Hydroxyproline-rich glycoprotein family protein) (T26J12.17 protein) (Uncharacterized protein F19G10.1) 17223 At1g23050 (Hydroxyproline-rich glycoprotein family protein) (T26J12.17 protein) (Uncharacterized protein F19G10.1) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2201175; AT1G23050 NA NA NA NA NA NA NA NA ENOG411EG35 F18N11.80 Q9M3E6 Q9M3E6_ARATH Transmembrane protein (Uncharacterized protein F18N11.80) 18083 Transmembrane protein (Uncharacterized protein F18N11.80) integral component of membrane [GO:0016021] locus:2078322; AT3G45320 NA NA NA NA NA NA NA NA ENOG411EG37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: leucine rich repeat NA NA NA NA NA NA NA ENOG411EG39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type IV leader peptidase family NA NA NA NA NA NA NA ENOG411E990 MED26A,MED26B F4J4Y5,Q9FHK9 MD26A_ARATH,MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26a,Probable mediator of RNA polymerase II transcription subunit 26b FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). May play a role in transcription elongation (By similarity). {ECO:0000250}. 65872,49135 Probable mediator of RNA polymerase II transcription subunit 26a,Probable mediator of RNA polymerase II transcription subunit 26b elongin complex [GO:0070449]; translation elongation factor activity [GO:0003746]; regulation of transcription, DNA-templated [GO:0006355]; transcription elongation from RNA polymerase II promoter [GO:0006368] locus:2103167;,locus:2156814; AT3G10820,AT5G05140 TFS2N NA NA NA NA NA NA NA ENOG411E99W UUAT1,RTNLB8 Q9FYE5,Q9SS40,Q9SS37 UUAT1_ARATH,PT310_ARATH,RTNLH_ARATH UDP-URONIC ACID TRANSPORTER 1,Probable sugar phosphate/phosphate translocator At3g10290,Reticulon-like protein B8 (AtRTNLB8) DISRUPTION PHENOTYPE: Changes in cell wall monosaccharide composition with a strong reduction of galacturonic acid (GalA), rhamnose and xylose content in the sead coat mucilage composition. {ECO:0000269|PubMed:28062750}. FUNCTION: UDP-glucuronic acid transporter that modulates the polysaccharide composition of seed mucilage. Transports UDP-glucuronic acid (UDP-GlcA) and UDP-galacturonic acid (UDP-GalA) in vitro. {ECO:0000269|PubMed:28062750}. 33713,38954,27913 UDP-URONIC ACID TRANSPORTER 1,Probable sugar phosphate/phosphate translocator At3g10290,Reticulon-like protein B8 (AtRTNLB8) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643]; mucilage metabolic process involved in seed coat development [GO:0048359]; nucleotide-sugar transport [GO:0015780],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] DEVELOPMENTAL STAGE: Expressed during seed development at the mucilage production stages. {ECO:0000269|PubMed:28062750}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:28062750}. locus:2146683;,locus:2076239;,locus:2076284; AT5G04160,AT3G10290,AT3G10260 UAA transporter family NA NA NA NA NA NA NA ENOG411E99N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E99D PUP17,PUP23,PUP18,PUP14 Q1PFJ4,Q9C654,Q9C508,Q9FXH5 PUP17_ARATH,PUP23_ARATH,PUP18_ARATH,PUP14_ARATH Probable purine permease 17 (AtPUP17),Probable purine permease 23 (AtPUP23),Probable purine permease 18 (AtPUP18),Purine permease 14 (AtPUP14) FUNCTION: Purine permease implicated in ATP-dependent cytokinin translocation that controls the spatiotemporal landscape of cytokinin signaling. Depletes ligands from the apoplast, which leads to a suppression of the cytokinin response. {ECO:0000269|PubMed:27701112}. 45393,44829,44182,44063 Probable purine permease 17 (AtPUP17),Probable purine permease 23 (AtPUP23),Probable purine permease 18 (AtPUP18),Purine permease 14 (AtPUP14) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863],integral component of membrane [GO:0016021]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; purine nucleobase transmembrane transporter activity [GO:0005345]; cytokinin transport [GO:0010184]; cytokinin-activated signaling pathway [GO:0009736]; negative regulation of cytokinin-activated signaling pathway [GO:0080037]; purine nucleobase transport [GO:0006863] TISSUE SPECIFICITY: Expressed in seedlings, leaves, embryos, ovules, seeds and the root and shoot meristems. In heart-stage embryos, detected in cells that failed to respond to cytokinins, including the prospective cotyledons. {ECO:0000269|PubMed:27701112}. locus:2824334;,locus:2010055;,locus:2010060;,locus:2013124; AT1G57943,AT1G57980,AT1G57990,AT1G19770 Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411EJAE Q9LQL1 Q9LQL1_ARATH F5D14.24 protein (Uncharacterized protein At1g32460) 10090 F5D14.24 protein (Uncharacterized protein At1g32460) locus:2033787; AT1G32460 NA NA NA NA NA NA NA NA ENOG411EJAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EJA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0144700 protein (cDNA clone:001-110-F06, full insert sequence) Q5ZBL3 Q5ZBL3_ORYSJ Os01g0144700 OsJ_00343 OSNPB_010144700 P0024G09.36 ENOG411EJA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA ligase N terminus NA NA NA NA NA NA NA ENOG411EJA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os09g0566600 protein A0A0N7KRA4 A0A0N7KRA4_ORYSJ Os09g0566600 OSNPB_090566600 ENOG411E5V0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0431150 protein,Os09g0408500 protein,Os09g0408550 protein A0A0N7KPW5,A0A0N7KQS4,A0A0P0XLJ6 A0A0N7KPW5_ORYSJ,A0A0N7KQS4_ORYSJ,A0A0P0XLJ6_ORYSJ Os08g0431150 OSNPB_080431150,Os09g0408500 OSNPB_090408500,Os09g0408550 OSNPB_090408550 ENOG411E5V3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxin-3 NA NA NA NA NA NA NA ENOG411E5VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5VR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0172900 protein Q6ZA56 Q6ZA56_ORYSJ P0496D04.34-2 Os07g0172900 OsJ_23270 OSNPB_070172900 ENOG411E5VA Q9SAG2,Q9SAI8 Q9SAG2_ARATH,Q9SAI8_ARATH At1g80980 (F23A5.34) (Stress response NST1-like protein),F23A5.5 (Stress response NST1-like protein) (Uncharacterized protein At1g80700) 24620,24606 At1g80980 (F23A5.34) (Stress response NST1-like protein),F23A5.5 (Stress response NST1-like protein) (Uncharacterized protein At1g80700) integral component of membrane [GO:0016021] locus:2025837;,locus:2025682; AT1G80980,AT1G80700 NA Os08g0278100 protein Q6Z1L7 Q6Z1L7_ORYSJ Os08g0278100 Os08g0278100 OsJ_26714 OSJNBa0091M20.21 OSNPB_080278100 ENOG411DTGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os01g0937100 protein (Putative xylanase inhibitor) (cDNA clone:001-203-B07, full insert sequence) Q8S1V0 Q8S1V0_ORYSJ Os01g0937100 OSNPB_010937100 P0504E02.10 ENOG411DTGH EDA30,AT3G30300.1 F4J2C8,Q8GZ81 F4J2C8_ARATH,Q8GZ81_ARATH O-fucosyltransferase family protein,At3g30300 (O-fucosyltransferase family protein) (Putative auxin-independent growth promoter protein) 75038,76904 O-fucosyltransferase family protein,At3g30300 (O-fucosyltransferase family protein) (Putative auxin-independent growth promoter protein) chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; transferase activity, transferring glycosyl groups [GO:0016757]; polar nucleus fusion [GO:0010197]; pollen tube development [GO:0048868],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2079404;,locus:2102886; AT3G03810,AT3G30300 DUF246 domain-containing protein Os05g0132500 protein,Os05g0132500 protein (Fragment) Q0DL00,A0A0P0WHJ7 Q0DL00_ORYSJ,A0A0P0WHJ7_ORYSJ Os05g0132500 Os05g0132500 OSNPB_050132500,Os05g0132500 OSNPB_050132500 ENOG411DTGK PCMP-E76 Q9SIT7 PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 78091 Pentatricopeptide repeat-containing protein At2g13600 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; sugar mediated signaling pathway [GO:0010182] locus:2054131; AT2G13600 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DTGN PCMP-E75 Q9SJG6 PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic 62656 Pentatricopeptide repeat-containing protein At2g42920, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2045580; AT2G42920 Pentatricopeptide repeat-containing protein Os03g0635000 protein (Pentatricopeptide, putative, expressed) Q10GC5 Q10GC5_ORYSJ Os03g0635000 LOC_Os03g43470 OSNPB_030635000 ENOG411DTGA UPL2,UPL1 Q8H0T4,Q8GY23 UPL2_ARATH,UPL1_ARATH E3 ubiquitin-protein ligase UPL2 (Ubiquitin-protein ligase 2) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL2),E3 ubiquitin-protein ligase UPL1 (Ubiquitin-protein ligase 1) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL1) FUNCTION: Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.,FUNCTION: Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000303|PubMed:10571878}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-6798695;R-ATH-983168; 2.3.2.26 403616,405000 E3 ubiquitin-protein ligase UPL2 (Ubiquitin-protein ligase 2) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL2),E3 ubiquitin-protein ligase UPL1 (Ubiquitin-protein ligase 1) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL1) cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630],ubiquitin protein ligase activity [GO:0061630] DEVELOPMENTAL STAGE: Constitutively expressed throughout development post-germination (at protein level). {ECO:0000269|PubMed:10571878}. TISSUE SPECIFICITY: Widely expressed. Expressed in root, stem, cauline and rosette leaf, seedling and flower (at protein level). {ECO:0000269|PubMed:10571878}. locus:2016174; AT1G70320,AT1G55860 Ubiquitin-protein ligase Os12g0428600 protein (Fragment),Os09g0252800 protein (Fragment),Os09g0252700 protein (Fragment) Q0INM5,Q0J364,Q0J365,A0A0P0Y9L1,A0A0P0XK70 Q0INM5_ORYSJ,Q0J364_ORYSJ,Q0J365_ORYSJ,A0A0P0Y9L1_ORYSJ,A0A0P0XK70_ORYSJ Os12g0428600 Os12g0428600 OSNPB_120428600,Os09g0252800 Os09g0252800 OSNPB_090252800,Os09g0252700 OSNPB_090252700,Os12g0428600 OSNPB_120428600,Os09g0252800 OSNPB_090252800 ENOG411DTGB Q9LR85,A0A1P8ANP8 Q9LR85_ARATH,A0A1P8ANP8_ARATH Putative thiol-disulfide oxidoreductase DCC (T23E23.25),Putative thiol-disulfide oxidoreductase DCC 23981,16896 Putative thiol-disulfide oxidoreductase DCC (T23E23.25),Putative thiol-disulfide oxidoreductase DCC locus:6530298147; AT1G24095 Protein of unknown function DUF393 Os06g0237100 protein A0A0P0WUX9 A0A0P0WUX9_ORYSJ Os06g0237100 OSNPB_060237100 ENOG411DTGG BAM1,BAM2 O49545,Q9M2Z1 BAME1_ARATH,BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 1),Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 2) DISRUPTION PHENOTYPE: Rescues partially CLV3 disruption. When associated with BAM2 disruption, abnormal anthers at a very early stage and later lack of endothecium, middle and tapetum layers. Loss of stem cells at the shoot and flower meristems. {ECO:0000269|PubMed:16367950, ECO:0000269|PubMed:16751349, ECO:0000269|PubMed:18780746}.,DISRUPTION PHENOTYPE: Rescues partially CLV3 disruption. When associated with BAM1 disruption, abnormal anthers at a very early stage and later lack of endothecium, middle and tapetum layers. Loss of stem cells at the shoot and flower meristems. {ECO:0000269|PubMed:16367950, ECO:0000269|PubMed:16751349, ECO:0000269|PubMed:18780746}. No visible phenotype.,Anthers in double mutant plants appeared abnormal at a very early stage and lack the endothecium middle and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs) suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis suggesting that these cells are defective.,Reduced shoot meristem size.,Plants arrest early in development due to loss of shoot apical meristem but recover through adventitious shoot formation.,Reduced numbers of stamens and carpels suggesting a reduction in floral meristem size.,Triple mutant enhances the floral meristem defects of clv1-11 single mutant. Novel phenotypes include the existence of an enlarged indeterminate meristem in the center of each flower. Leaves are smaller and number of rosette leaves is increased.,Number of carpels not statistically significant form that of clv2-1 alone.,Triple mutant shows greater suppression of the clv3-2 with approximately 4.3 carpels per flower compared to clv3-2 single mutants which have approximately 6.7 carpels per flower.,Number of carpels reduced relative to clv3 single mutant.,Altered leaf morphology: fewer veins than wild type and a distinct lack of higher-ordered veins.,Delayed in development: smaller in size and bolt and flower later than wild-type plants.,Floral organ defects.,Higher degree of branching in plants and have a longer lifespan. Almost completely sterile.,Reduced number of carpels relative to clv3 single mutant. FUNCTION: Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. {ECO:0000269|PubMed:16367950, ECO:0000269|PubMed:16751349, ECO:0000269|PubMed:18780746}. 2.7.11.1 109203,109244 Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 1),Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein self-association [GO:0043621]; protein serine/threonine kinase activity [GO:0004674]; receptor serine/threonine kinase binding [GO:0033612]; cell differentiation [GO:0030154]; floral organ development [GO:0048437]; gametophyte development [GO:0048229]; regulation of meristem growth [GO:0010075],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; receptor serine/threonine kinase binding [GO:0033612]; cell differentiation [GO:0030154]; floral organ development [GO:0048437]; gametophyte development [GO:0048229]; regulation of meristem growth [GO:0010075] DEVELOPMENTAL STAGE: Expressed in a ring surrounding the center of meristems extended in the cortex of developing stems and older pedicels. Present in all developing floral organs, especially in anthers and gynoecium. Observed in anthers at stage 2 in the archesporial cells. At stage 3, localized in the primary sporogenous and primary parietal cells. Subsequently preferentially expressed in the sporogenous cells at anther stage 4. Later restricted to the tapetum and pollen mother cells (PMCs) before disappearing progressively. {ECO:0000269|PubMed:16367950, ECO:0000269|PubMed:16751349}.,DEVELOPMENTAL STAGE: Expressed in a ring surrounding the center of meristems extended in the cortex of developing stems and older pedicels. Present in all developing floral organs, especially in anthers and gynoecium (mainly in ovules). Observed in anthers at stage 2 in the archesporial cells. At stage 3, localized in the primary sporogenous and primary parietal cells. Subsequently preferentially expressed in the sporogenous cells at anther stage 4. Later restricted to the tapetum and pollen mother cells (PMCs) before disappearing progressively. {ECO:0000269|PubMed:16367950, ECO:0000269|PubMed:16751349}. TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, inflorescences, flowers and siliques. {ECO:0000269|PubMed:16367950}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, rosette leaves, stems, inflorescences, flowers and siliques. {ECO:0000269|PubMed:16367950}. locus:2169965;,locus:2097310; AT5G65700,AT3G49670 Receptor protein kinase CLAVATA1 Os03g0773700 protein (Fragment),Os03g0228800 protein (Receptor protein kinase CLAVATA1, putative, expressed),Os07g0134200 protein (Putative OsLRK1(Receptor-type protein kinase)) (cDNA, clone: J100084O15, full insert sequence) Q0DN56,Q10PM6,Q6ZLK5 Q0DN56_ORYSJ,Q10PM6_ORYSJ,Q6ZLK5_ORYSJ Os03g0773700 OSNPB_030773700,LOC_Os03g12730 Os03g0228800 OsJ_10012 OSNPB_030228800,Os07g0134200 OJ1118_D07.29 OsJ_22997 OSNPB_070134200 P0507H12.14 ENOG411DTG8 Q9LSL9,F4I704 PP445_ARATH,F4I704_ARATH Pentatricopeptide repeat-containing protein At5g65560,Pentatricopeptide repeat (PPR) superfamily protein 103538,45416 Pentatricopeptide repeat-containing protein At5g65560,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2155730;,locus:2031432; AT5G65560,AT1G77340 Pentatricopeptide repeat-containing protein Os02g0582300 protein (Putative pentatricopeptide (PPR) repeat-containing protein),Os06g0690900 protein (Putative fertility restorer),Os08g0300700 protein (Putative fertility restorer) (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J033064B21, full insert sequence) Q6EPV3,Q654Y7,Q6ZDB7 Q6EPV3_ORYSJ,Q654Y7_ORYSJ,Q6ZDB7_ORYSJ Os02g0582300 Os02g0582300 OSJNBa0016D04.14 OSNPB_020582300,Os06g0690900 OSNPB_060690900 P0532H03.7 P0661G04.40,P0045D08.129 Os08g0300700 OSJNBa0070J19.2 OSJNBa0096K16.6 OSNPB_080300700 ENOG411DTG0 Q9SJF3 DCP1_ARATH mRNA-decapping enzyme-like protein (EC 3.-.-.-) (DCP1 homolog) DISRUPTION PHENOTYPE: Lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. {ECO:0000269|PubMed:17158604}. The homozygous progeny does not form flower buds.,The homozygous progeny is seedling lethal showed arrested postembryonic development including cotyledon expansion development of vascular networks root elongation and shoot development. Seedling lethal-N. Chua-2006 FUNCTION: As a component of the decapping complex, involved in the degradation of mRNAs. Essential for postembryonic development. {ECO:0000269|PubMed:17158604, ECO:0000269|PubMed:17485080}. R-ATH-430039; 3.-.-.- 40611 mRNA-decapping enzyme-like protein (EC 3.-.-.-) (DCP1 homolog) cytoplasm [GO:0005737]; P-body [GO:0000932]; enzyme activator activity [GO:0008047]; enzyme regulator activity [GO:0030234]; hydrolase activity [GO:0016787]; mRNA binding [GO:0003729]; deadenylation-dependent decapping of nuclear-transcribed mRNA [GO:0000290]; deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; defense response [GO:0006952]; mRNA processing [GO:0006397] DEVELOPMENTAL STAGE: Gradually accumulates during seed maturation to reached maximum levels in dry seeds. Fades progressively upon germination. {ECO:0000269|PubMed:19855049}. TISSUE SPECIFICITY: Expressed in seedlings, mostly in root tips, root hairs, and the vascular system. Also present in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:17158604}. locus:2201821; AT1G08370 mRNA-decapping enzyme-like Dcp1-like decapping family protein, expressed (Os12g0156400 protein) (cDNA clone:J013116L20, full insert sequence) (cDNA clone:J023125D09, full insert sequence),Os11g0155000 protein Q2QXH6,Q0IUI3 Q2QXH6_ORYSJ,Q0IUI3_ORYSJ Os12g0156400 LOC_Os12g06020 Os12g0156400 OsJ_35280 OSNPB_120156400,Os11g0155000 OSNPB_110155000 ENOG411EHQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE302 protein (Os03g0260432 protein) A8R3M9 A8R3M9_ORYSJ OsCLE302 Os03g0260432 OsJ_10211 OSNPB_030260432 ENOG411EHQ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1138) NA NA NA NA NA NA NA ENOG411EHQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EHQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger Os02g0474200 protein,Os02g0275500 protein A3A6S7,A3A5H8 A3A6S7_ORYSJ,A3A5H8_ORYSJ Os02g0474200 OsJ_06711 OSNPB_020474200,Os02g0275500 OsJ_06231 OSNPB_020275500 ENOG411EHQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0864566 protein,Os02g0527950 protein (Fragment) A0A0P0VAP4,A0A0P0VJV7 A0A0P0VAP4_ORYSJ,A0A0P0VJV7_ORYSJ Os01g0864566 OSNPB_010864566,Os02g0527950 OSNPB_020527950 ENOG411EHQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0167800 protein Q5VRG2 Q5VRG2_ORYSJ Os06g0167800 OsJ_20264 OSJNBa0033B09.10 OSNPB_060167800 P0680A03.31 ENOG411EHQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0750701 protein A0A0P0VPV7 A0A0P0VPV7_ORYSJ Os02g0750701 OSNPB_020750701 ENOG411EHQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hpt domain NA NA NA NA NA NA NA ENOG411EHQT Q8S8R1 Q8S8R1_ARATH Expressed protein (Late embryogenesis abundant protein, group 6) (Late embryogenesis abundant-like protein) (Uncharacterized protein At2g23120) 8482 Expressed protein (Late embryogenesis abundant protein, group 6) (Late embryogenesis abundant-like protein) (Uncharacterized protein At2g23120) cytosol [GO:0005829]; plasma membrane [GO:0005886] locus:2045299; AT2G23120 Late embryogenesis abundant protein 18 NA NA NA NA NA NA NA ENOG411E9N8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9N9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein, expressed (Os10g0145100 protein) (cDNA clone:J023054J12, full insert sequence),F-box domain containing protein, expressed (Os10g0145200 protein),F-box domain containing protein, expressed (Os10g0145000 protein) (cDNA clone:002-172-E06, full insert sequence),F-box domain containing protein, expressed (Os10g0145100 protein) Q33B36,Q33B34,Q7XGV7,Q33B35 Q33B36_ORYSJ,Q33B34_ORYSJ,Q7XGV7_ORYSJ,Q33B35_ORYSJ Os10g0145100 LOC_Os10g05530 OSNPB_100145100,LOC_Os10g05540 Os10g0145200 OSNPB_100145200,LOC_Os10g05520 Os10g0145000 OsJ_30710 OSJNBa0030B02.5 OSNPB_100145000,LOC_Os10g05530 Os10g0145100 OSNPB_100145100 ENOG411E9N0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E9N2 F24K9.9 Q9CAY4 Q9CAY4_ARATH At3g11420 (Beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604)) (Glycosyltransferase) (Uncharacterized protein At3g11420) (Uncharacterized protein F24K9.9) 58041 At3g11420 (Beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604)) (Glycosyltransferase) (Uncharacterized protein At3g11420) (Uncharacterized protein F24K9.9) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2080797; AT3G11420 Protein of unknown function DUF604 NA NA NA NA NA NA NA ENOG411E9N4 Q9LNB3 Q9LNB3_ARATH Ankyrin repeat/KH domain protein (DUF1442) (F5O11.5) (Uncharacterized protein At1g12320) 23086 Ankyrin repeat/KH domain protein (DUF1442) (F5O11.5) (Uncharacterized protein At1g12320) locus:2034645; AT1G12320 Protein of unknown function (DUF1442) NA NA NA NA NA NA NA ENOG411E9N5 PER28 Q9SS67 PER28_ARATH Peroxidase 28 (Atperox P28) (EC 1.11.1.7) (ATP39) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT3G03670-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34537 Peroxidase 28 (Atperox P28) (EC 1.11.1.7) (ATP39) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; cellular response to hypoxia [GO:0071456]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2096419; AT3G03670 Peroxidase NA NA NA NA NA NA NA ENOG411E9N6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein NB-ARC domain containing protein, expressed (Os11g0606400 protein) (cDNA clone:J013102N23, full insert sequence),NB-ARC domain containing protein, expressed (Os11g0605100 protein) (cDNA clone:J013041A20, full insert sequence),Os11g0606800 protein Q2R1F9,Q2R1H2,A0A0P0Y455 Q2R1F9_ORYSJ,Q2R1H2_ORYSJ,A0A0P0Y455_ORYSJ Os11g0606400 LOC_Os11g39310 OSNPB_110606400,LOC_Os11g39190 Os11g0605100 OSNPB_110605100,Os11g0606800 OSNPB_110606800 ENOG411E9N7 PER13 O49293 PER13_ARATH Peroxidase 13 (Atperox P13) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G77100-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34765 Peroxidase 13 (Atperox P13) (EC 1.11.1.7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] AT1G77100 Peroxidase NA NA NA NA NA NA NA ENOG411E9NX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PsbP NA NA NA NA NA NA NA ENOG411E9NY NAC001 Q0WV96 NAC1_ARATH NAC domain-containing protein 1 (ANAC001) (Protein NTM1-like 10) FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. 49426 NAC domain-containing protein 1 (ANAC001) (Protein NTM1-like 10) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. locus:2200935; AT1G01010 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E9NZ A0A1P8B591,A0A1P8B595,F4JNL1 A0A1P8B591_ARATH,A0A1P8B595_ARATH,F4JNL1_ARATH Disease resistance protein (TIR-NBS-LRR class) family 71400,68498,72528 Disease resistance protein (TIR-NBS-LRR class) family signal transduction [GO:0007165],vacuole [GO:0005773]; signal transduction [GO:0007165] locus:2117974; AT4G23510 TIR NA NA NA NA NA NA NA ENOG411E9NP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os11g0213800 protein) (cDNA clone:002-102-C02, full insert sequence),NBS-LRR disease resistance protein, putative (Os11g0212100 protein) Q2R8W6,Q2R8Y1 Q2R8W6_ORYSJ,Q2R8Y1_ORYSJ Os11g0213800 LOC_Os11g10770 Os11g0213800 OSNPB_110213800,Os11g0212100 LOC_Os11g10620 OsJ_33342 OSNPB_110212100 ENOG411E9NQ RIC3 F4I5N6 RIC3_ARATH CRIB domain-containing protein RIC3 (ROP-interactive CRIB motif-containing protein 3) (Target of ROP protein RIC3) "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Functions as downstream effector of ARAC11/ROP1 to activate calcium signaling that leads to F-actin disassembly associated with exocytosis in the tip of the growing pollen tube. Counteracts the ARAC11/ROP1-RIC4 pathway, which promotes apical F-actin assembly associated with vesicle accumulation, to control actin dynamics and pollen tube apical growth. {ECO:0000269|PubMed:11752391, ECO:0000269|PubMed:15824136, ECO:0000269|PubMed:18591430}." MISCELLANEOUS: Over-expression of RIC3 in tobacco germinating pollen induces depolarized pollen tube growth. {ECO:0000305|PubMed:11752391}. 24256 CRIB domain-containing protein RIC3 (ROP-interactive CRIB motif-containing protein 3) (Target of ROP protein RIC3) cytoplasm [GO:0005737]; establishment of vesicle localization [GO:0051650]; pollen tube growth [GO:0009860]; positive regulation of calcium-mediated signaling [GO:0050850]; positive regulation of cytosolic calcium ion concentration [GO:0007204]; regulation of actin filament depolymerization [GO:0030834]; regulation of calcium-mediated signaling [GO:0050848]; regulation of exocytosis [GO:0017157]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in flowers and pollen. {ECO:0000269|PubMed:11752391}. locus:2018369; AT1G04450 Rop-interactive crib motif-containing protein 3 NA NA NA NA NA NA NA ENOG411E9NR MLP4 Q93WB5,Q9FYJ0 Q93WB5_ARATH,Q9FYJ0_ARATH Major latex protein, putative (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),F17F8.9 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) 17682,17593 Major latex protein, putative (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),F17F8.9 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2006832;,locus:2015701; AT1G14960,AT1G30990 Bet_v_1 NA NA NA NA NA NA NA ENOG411E9NS Q1PFK0,O23360,Q3EAE5,Q9LFM0,F4JJD2,F4I1V3 FBL32_ARATH,FBL93_ARATH,FDL24_ARATH,Q9LFM0_ARATH,F4JJD2_ARATH,F4I1V3_ARATH F-box/LRR-repeat protein At1g55660,Putative F-box/LRR-repeat protein At4g15060,Putative F-box/FBD/LRR-repeat protein At4g00315,FBD / Leucine Rich Repeat domains containing protein (Uncharacterized protein F2I11_260),FBD-like domain family protein,FBD, F-box and Leucine Rich Repeat domains containing protein 41788,49721,50951,35341,19152,56575 F-box/LRR-repeat protein At1g55660,Putative F-box/LRR-repeat protein At4g15060,Putative F-box/FBD/LRR-repeat protein At4g00315,FBD / Leucine Rich Repeat domains containing protein (Uncharacterized protein F2I11_260),FBD-like domain family protein,FBD, F-box and Leucine Rich Repeat domains containing protein plasmodesma [GO:0009506] locus:1005716372;,locus:2148037;,locus:504955444;,locus:2020537; AT1G55660,AT4G15060,AT4G00315,AT5G11370,AT4G15075 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E9NT MGN6.17 Q9FHZ7 Q9FHZ7_ARATH F-box protein, putative (DUF295) (Gb|AAC80597.1) 44076 F-box protein, putative (DUF295) (Gb|AAC80597.1) locus:2164067; AT5G53790 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E9NU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fructose-bisphosphate aldolase class-I NA NA NA NA NA NA NA ENOG411E9NW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9NH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA abscisate beta-glucosyltransferase-like NA NA NA NA NA NA NA ENOG411E9NI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase Os01g0690900 protein,Os01g0689900 protein (Receptor-like protein kinase-like) (cDNA clone:002-114-G02, full insert sequence),Os01g0690600 protein (Fragment) A2ZWR3,Q5N7Q6,A0A0P0V6T6 A2ZWR3_ORYSJ,Q5N7Q6_ORYSJ,A0A0P0V6T6_ORYSJ Os01g0690900 OsJ_03079 OSNPB_010690900,P0034C09.1-3 Os01g0689900 OSNPB_010689900,Os01g0690600 OSNPB_010690600 ENOG411E9NJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9NK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os08g0456200 protein (Putative elicitor-inducible cytochrome P450) Q6Z0Q6 Q6Z0Q6_ORYSJ Os08g0456200 Os08g0456200 B1144B06.25 OsJ_27558 OSNPB_080456200 ENOG411E9NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: - F-box LRR and FBD domain containing protein expressed Os02g0105800 protein (cDNA clone:J033087L07, full insert sequence),Os02g0105600 protein Q6ETD6,Q6ETD8 Q6ETD6_ORYSJ,Q6ETD8_ORYSJ Os02g0105800 Os02g0105800 OJ1359_D06.11 OsJ_05026 OSNPB_020105800,OJ1359_D06.8 Os02g0105600 OSNPB_020105600 ENOG411E9NN ATHB-5,HB5 P46667,F4KHX1 ATHB5_ARATH,F4KHX1_ARATH Homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein ATHB-5) (Homeodomain transcription factor ATHB-5),Homeobox protein 5 FUNCTION: Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. 34791,32847 Homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein ATHB-5) (Homeodomain transcription factor ATHB-5),Homeobox protein 5 nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] DEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}. TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. locus:2168225; AT5G65310 protein homodimerization sequence-specific DNA binding transcription activator transcription factor NA NA NA NA NA NA NA ENOG411E9NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class Os10g0132500 protein,Os01g0348150 protein,Os05g0303133 protein A0A0P0XR88,A0A0P0V2B4,A0A0P0WKC3 A0A0P0XR88_ORYSJ,A0A0P0V2B4_ORYSJ,A0A0P0WKC3_ORYSJ Os10g0132500 OSNPB_100132500,Os01g0348150 OSNPB_010348150,Os05g0303133 OSNPB_050303133 ENOG411E9NB Q9C6H3,Q9C6H4,Q9C6H2 SINL2_ARATH,SINL1_ARATH,SINL3_ARATH E3 ubiquitin-protein ligase SINA-like 2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 2) (Seven in absentia-like protein 2),E3 ubiquitin-protein ligase SINA-like 1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 1) (Seven in absentia-like protein 1),E3 ubiquitin-protein ligase SINA-like 3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 3) (Seven in absentia-like protein 3) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5689880;R-ATH-983168; 2.3.2.27 35278,40788,34385 E3 ubiquitin-protein ligase SINA-like 2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 2) (Seven in absentia-like protein 2),E3 ubiquitin-protein ligase SINA-like 1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 1) (Seven in absentia-like protein 1),E3 ubiquitin-protein ligase SINA-like 3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 3) (Seven in absentia-like protein 3) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2195175;,locus:2195170;,locus:2195180; AT1G66620,AT1G66610,AT1G66630 seven in absentia (SINA) protein NA NA NA NA NA NA NA ENOG411E9NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9ND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF822) NA NA NA NA NA NA NA ENOG411E9NE MDH3 Q9FJU0 MDHC3_ARATH Malate dehydrogenase 3, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 3) (cNAD-MDH3) (Cytsolic malate dehydrogenase 3) (Cytosolic MDH3) FUNCTION: Catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments. {ECO:0000305|PubMed:20876337}. 1.1.1.37 36870 Malate dehydrogenase 3, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 3) (cNAD-MDH3) (Cytsolic malate dehydrogenase 3) (Cytosolic MDH3) cytoplasm [GO:0005737]; membrane [GO:0016020]; L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; NADH metabolic process [GO:0006734]; oxaloacetate metabolic process [GO:0006107]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Expressed in rosette leaves at low levels. {ECO:0000269|PubMed:20876337}. locus:2165066; AT5G56720 Malate dehydrogenase NA NA NA NA NA NA NA ENOG411E9NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0702800 protein A0A0P0Y5S9 A0A0P0Y5S9_ORYSJ Os11g0702800 OSNPB_110702800 ENOG411E9NG CPK19 Q1PFH8 CDPKJ_ARATH Calcium-dependent protein kinase 19 (EC 2.7.11.1) FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 62948 Calcium-dependent protein kinase 19 (EC 2.7.11.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2036783; AT1G61950 Pfam:efhand NA NA NA NA NA NA NA ENOG411ED8Z BAD1,MRB17.12 Q8GYH5,F4K1T0 BAD1_ARATH,F4K1T0_ARATH Ankyrin repeat-containing protein BDA1 (Protein BIAN DA 1),Ankyrin repeat family protein FUNCTION: Involved in plant defense. Required for basal resistance against Pseudomonas syringae pv. tomato DC3000. Required for resistance against nonpathogenic bacteria. May be involved in signaling components that function downstream of SNC2 and upstream of NPR1 and WRKY70 to regulate defense responses. {ECO:0000269|PubMed:22740615}. 48346,48582 Ankyrin repeat-containing protein BDA1 (Protein BIAN DA 1),Ankyrin repeat family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; innate immune response [GO:0045087]; response to salicylic acid [GO:0009751],integral component of membrane [GO:0016021] locus:2172089;,locus:2172099; AT5G54610,AT5G54620 ANK NA NA NA NA NA NA NA ENOG411ED8Y GSTU26 Q9SHH8 GSTUQ_ARATH Glutathione S-transferase U26 (AtGSTU26) (EC 2.5.1.18) (GST class-tau member 26) FUNCTION: In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB). May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:16538523}. 2.5.1.18 25779 Glutathione S-transferase U26 (AtGSTU26) (EC 2.5.1.18) (GST class-tau member 26) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to cold [GO:0009409]; response to herbicide [GO:0009635]; toxin catabolic process [GO:0009407] locus:2020302; AT1G17190 Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411ED8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411ED8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif OSJNBb0089B03.12 protein (Os04g0380300 protein) (cDNA clone:J013027B10, full insert sequence) Q7XNP9 Q7XNP9_ORYSJ Os04g0380300 Os04g0380300 OsJ_14521 OSJNBb0089B03.12 OSNPB_040380300 ENOG411ED8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os04g0589950 protein,Os05g0331616 protein B9FC77,A0A0P0WKW4 B9FC77_ORYSJ,A0A0P0WKW4_ORYSJ Os04g0589950 OsJ_15964 OSNPB_040589950,Os05g0331616 OSNPB_050331616 ENOG411ED8Q DRP1B,DL1B Q84XF3,A0A1I9LMW7,A0A1I9LMW6 DRP1B_ARATH,A0A1I9LMW7_ARATH,A0A1I9LMW6_ARATH Dynamin-related protein 1B (Dynamin-like protein B),DYNAMIN-like 1B FUNCTION: Putative microtubule-associated force-producing protein. {ECO:0000250}. ARA:AT3G61760-MONOMER; 68084,51646,63986 Dynamin-related protein 1B (Dynamin-like protein B),DYNAMIN-like 1B cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; mitochondrial fission [GO:0000266],GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2076780; AT3G61760 GED NA NA NA NA NA NA NA ENOG411ED8P F4JXZ8 F4JXZ8_ARATH Plant self-incompatibility protein S1 family 20854 Plant self-incompatibility protein S1 family locus:2181955; AT5G11820 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411ED8W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411ED8U WIP5 Q8W031 ZWIP5_ARATH Zinc finger protein WIP5 (WIP-domain protein 5) (AtWIP5) FUNCTION: Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. 38238 Zinc finger protein WIP5 (WIP-domain protein 5) (AtWIP5) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2008281; AT1G51220 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411ED8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ED8K CRRSP58,CRRSP59,CRRSP5,CRRSP6 Q9FHD4,Q9FHD3,Q9SH43,Q9SH42 CRR58_ARATH,CRR59_ARATH,CRRS5_ARATH,CRRS6_ARATH Cysteine-rich repeat secretory protein 58,Cysteine-rich repeat secretory protein 59,Putative cysteine-rich repeat secretory protein 5,Probable cysteine-rich repeat secretory protein 6 32077,32475,29743,30350 Cysteine-rich repeat secretory protein 58,Cysteine-rich repeat secretory protein 59,Putative cysteine-rich repeat secretory protein 5,Probable cysteine-rich repeat secretory protein 6 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886],extracellular region [GO:0005576],anchored component of membrane [GO:0031225]; extracellular region [GO:0005576]; plasma membrane [GO:0005886] locus:2155130;,locus:2155085;,locus:2031381;,locus:2031295; AT5G41290,AT5G41300,AT1G63590,AT1G63580 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ED8J CRK41,A_TM018A10.19 O23081,O23082,A0A1P8B4R0,A0A1P8B811,A0A1P8B7Y8,A0A1P8B7Z2 CRK41_ARATH,Y4960_ARATH,A0A1P8B4R0_ARATH,A0A1P8B811_ARATH,A0A1P8B7Y8_ARATH,A0A1P8B7Z2_ARATH Cysteine-rich receptor-like protein kinase 41 (Cysteine-rich RLK41) (EC 2.7.11.-),Putative receptor-like protein kinase At4g00960 (EC 2.7.11.1),Cysteine-rich RLK (RECEPTOR-like protein kinase) 41,Protein kinase superfamily protein 2.7.11.-,2.7.11.1 74887,43412,63817,33393,31638,32512 Cysteine-rich receptor-like protein kinase 41 (Cysteine-rich RLK41) (EC 2.7.11.-),Putative receptor-like protein kinase At4g00960 (EC 2.7.11.1),Cysteine-rich RLK (RECEPTOR-like protein kinase) 41,Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2134603; AT4G00970,AT4G00960 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ED8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411ED8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411ED8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411ED8C B3GALT1 Q9SAA4 B3GT1_ARATH Probable beta-1,3-galactosyltransferase 1 (EC 2.4.1.-) FUNCTION: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.- 43622 Probable beta-1,3-galactosyltransferase 1 (EC 2.4.1.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486] locus:2027352; AT1G11730 Galactosyltransferase NA NA NA NA NA NA NA ENOG411ED8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET domain NA NA NA NA NA NA NA ENOG411ED8G PVA21 Q9LVU1 VAP21_ARATH Vesicle-associated protein 2-1 (Plant VAP homolog 21) (AtPVA21) (VAMP-associated protein 2-1) [Cleaved into: Vesicle-associated protein 2-1, N-terminally processed] FUNCTION: May play a role in vesicle trafficking. {ECO:0000250}. R-ATH-6798695; 24667 Vesicle-associated protein 2-1 (Plant VAP homolog 21) (AtPVA21) (VAMP-associated protein 2-1) [Cleaved into: Vesicle-associated protein 2-1, N-terminally processed] endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2171594; AT5G47180 AT5G47180 (E 6e-100) vesicle-associated membrane family protein VAMP family protein NA NA NA NA NA NA NA ENOG411ED8F GRF2,GRF1 Q8L8A8,O81001 GRF2_ARATH,GRF1_ARATH Growth-regulating factor 2 (AtGRF2) (Transcription activator GRF2),Growth-regulating factor 1 (AtGRF1) (Transcription activator GRF1) FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.,FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. MISCELLANEOUS: Overexpression mutant display larger leaves and cotyledons, as well as a delayed bolting of the inflorescence stem when compared to wild-type plants. 58585,56401 Growth-regulating factor 2 (AtGRF2) (Transcription activator GRF2),Growth-regulating factor 1 (AtGRF1) (Transcription activator GRF1) nucleus [GO:0005634]; ATP binding [GO:0005524]; negative regulation of cell proliferation [GO:0008285]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ATP binding [GO:0005524]; sequence-specific DNA binding [GO:0043565]; glucosinolate metabolic process [GO:0019760]; regulation of nematode larval development [GO:0061062]; regulation of transcription, DNA-templated [GO:0006355]; response to nematode [GO:0009624]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Detected in young leaf primordium. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:21036927}.,TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. locus:2137549;,locus:2059206; AT4G37740,AT2G22840 QLQ NA NA NA NA NA NA NA ENOG411ED8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411ED89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein Os12g0569700 protein A0A0P0YBQ2 A0A0P0YBQ2_ORYSJ Os12g0569700 OSNPB_120569700 ENOG411ED88 F15G16.200 Q9M357 Q9M357_ARATH Glycosyl hydrolase family 17 protein (Uncharacterized protein F15G16.200) ARA:AT3G61810-MONOMER; 42055 Glycosyl hydrolase family 17 protein (Uncharacterized protein F15G16.200) anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2076735; AT3G61810 Glycosyl hydrolase family 17 protein NA NA NA NA NA NA NA ENOG411ED83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family NA NA NA NA NA NA NA ENOG411ED82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C1 domain NA NA NA NA NA NA NA ENOG411ED86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein Os08g0196200 protein (Fragment) A0A0P0XDL1 A0A0P0XDL1_ORYSJ Os08g0196200 OSNPB_080196200 ENOG411ED85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain NA NA NA NA NA NA NA ENOG411ED84 Q8RYE0 Q8RYE0_ARATH Uncharacterized protein At2g34170 58387 Uncharacterized protein At2g34170 locus:2055445; AT2G34170 Protein of unknown function (DUF688) NA NA NA NA NA NA NA ENOG411DRZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: S-phase cyclin A-associated protein in the ER Os06g0235300 protein (Zinc finger protein-like) (cDNA clone:J013072F13, full insert sequence) Q67V89 Q67V89_ORYSJ Os06g0235300 OSJNBa0080E19.23 OSJNBb0061B07.38 OSNPB_060235300 ENOG411EKD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLDc Os07g0438700 protein B9FWZ0 B9FWZ0_ORYSJ Os07g0438700 OsJ_24049 OSNPB_070438700 ENOG411EKD0 P25697 KPPR_ARATH Phosphoribulokinase, chloroplastic (PRK) (PRKase) (EC 2.7.1.19) (Phosphopentokinase) PATHWAY: Carbohydrate biosynthesis; Calvin cycle. MetaCyc:AT1G32060-MONOMER; 2.7.1.19 44464 Phosphoribulokinase, chloroplastic (PRK) (PRKase) (EC 2.7.1.19) (Phosphopentokinase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytosol [GO:0005829]; membrane [GO:0016020]; stromule [GO:0010319]; supramolecular complex [GO:0099080]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; disordered domain specific binding [GO:0097718]; phosphoribulokinase activity [GO:0008974]; protein homodimerization activity [GO:0042803]; uridine kinase activity [GO:0004849]; defense response to bacterium [GO:0042742]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097]; reductive pentose-phosphate cycle [GO:0019253]; response to cold [GO:0009409]; response to cytokinin [GO:0009735] locus:2195366; AT1G32060 Phosphoribulokinase Phosphoribulokinase (EC 2.7.1.19) C7J1V7,Q6Z8F4 C7J1V7_ORYSJ,Q6Z8F4_ORYSJ Os04g0596900 Os04g0595700 OSNPB_040596900,Os02g0698000 OsJ_08032 OSNPB_020698000 P0459B01.11 ENOG411EKD1 AtTTM1,AtTTM2 Q9C9B9,Q9C664,A0A1P8AW03,A0A1P8AVZ4,A0A1P8AW02,A0A1P8AW21,A0A1P8AW50 Q9C9B9_ARATH,Q9C664_ARATH,A0A1P8AW03_ARATH,A0A1P8AVZ4_ARATH,A0A1P8AW02_ARATH,A0A1P8AW21_ARATH,A0A1P8AW50_ARATH At1g73980/F2P9_15 (Phosphoribulokinase / Uridine kinase family) (Uncharacterized protein F2P9.15),Phosphoribulokinase / Uridine kinase family (Uncharacterized protein At1g26190) (Uncharacterized protein F28B23.13),Phosphoribulokinase / Uridine kinase family ARA:AT1G73980-MONOMER;,ARA:AT1G26190-MONOMER; 72408,76007,59575,72463,54824,65396,58963 At1g73980/F2P9_15 (Phosphoribulokinase / Uridine kinase family) (Uncharacterized protein F2P9.15),Phosphoribulokinase / Uridine kinase family (Uncharacterized protein At1g26190) (Uncharacterized protein F28B23.13),Phosphoribulokinase / Uridine kinase family cytosol [GO:0005829]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; uridine kinase activity [GO:0004849]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097]; response to abscisic acid [GO:0009737],cytosol [GO:0005829]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; pyrophosphatase activity [GO:0016462]; uridine kinase activity [GO:0004849]; defense response, incompatible interaction [GO:0009814]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097],ATP binding [GO:0005524]; kinase activity [GO:0016301],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; kinase activity [GO:0016301] locus:2031541;,locus:2028809; AT1G73980,AT1G26190 uridine-cytidine kinase C-like Os02g0708200 protein (Uridine kinase-like protein) (cDNA clone:J033088C10, full insert sequence) Q6YV21 Q6YV21_ORYSJ Os02g0708200 Os02g0708200 OSJNBb0060O16.26 OSNPB_020708200 ENOG411EKD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLASP N terminal Os04g0507500 protein,CLIP-associating protein 1-like (Os02g0617300 protein),Os02g0617300 protein,Os04g0507500 protein (Fragment) Q0JBW0,Q6KAI5,A0A0P0VLN8,A0A0P0WCA3 Q0JBW0_ORYSJ,Q6KAI5_ORYSJ,A0A0P0VLN8_ORYSJ,A0A0P0WCA3_ORYSJ Os04g0507500 Os04g0507500 OSNPB_040507500,Os02g0617300 Os02g0617300 OJ1014_H03.7-1 OSNPB_020617300,Os02g0617300 OSNPB_020617300,Os04g0507500 OSNPB_040507500 ENOG411EKD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ras-induced vulval development antagonist NA NA NA NA NA NA NA ENOG411EKD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-patch domain D111/G-patch domain-containing protein, putative, expressed (Os03g0125300 protein) (cDNA clone:J013001E10, full insert sequence) (cDNA clone:J033095A12, full insert sequence) Q10SE5 Q10SE5_ORYSJ LOC_Os03g03390 Os03g0125300 OsJ_09240 OSNPB_030125300 ENOG411EKDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ NA NA NA NA NA NA NA ENOG411EKDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trehalose-phosphate NA NA NA NA NA NA NA ENOG411EKDU DJC77 Q9SJI1 Q9SJI1_ARATH At2g42750/F7D19.25 (DNAJ heat shock N-terminal domain-containing protein) (Expressed protein) 38822 At2g42750/F7D19.25 (DNAJ heat shock N-terminal domain-containing protein) (Expressed protein) chloroplast [GO:0009507]; electron carrier activity [GO:0009055]; iron ion binding [GO:0005506] locus:2052426; AT2G42750 DNAJ heat shock N-terminal domain-containing protein Os01g0730500 protein (cDNA clone:J013160L20, full insert sequence) Q5JNF3 Q5JNF3_ORYSJ Os01g0730500 OsJ_03346 OSNPB_010730500 P0435H01.26 ENOG411EKDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: DNAJ heat shock N-terminal domain-containing protein Os06g0474800 protein (Fragment),Os06g0498450 protein (Fragment) A0A0P0WWQ1,A0A0P0WX21,A0A0P0WWX5 A0A0P0WWQ1_ORYSJ,A0A0P0WX21_ORYSJ,A0A0P0WWX5_ORYSJ Os06g0474800 OSNPB_060474800,Os06g0498450 OSNPB_060498450 ENOG411EKDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy (By similarity) NA NA NA NA NA NA NA ENOG411EKDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trehalose-phosphatase Probable trehalose-phosphate phosphatase 3 (OsTPP3) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) Q7XI41 TPP3_ORYSJ TPP3 Os07g0624600 LOC_Os07g43160 P0524E08.130 FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity). {ECO:0000250}. ENOG411EKDA Q8GUN9 Q8GUN9_ARATH TLD-domain containing nucleolar protein (Uncharacterized protein At4g39870) 43875 TLD-domain containing nucleolar protein (Uncharacterized protein At4g39870) locus:2140015; AT4G39870 Has 2018 Blast hits to 1865 proteins in 220 species Archae - 0 NA NA NA NA NA NA NA ENOG411EKDB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide exchange factor Fes1 NA NA NA NA NA NA NA ENOG411EKDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide exchange factor Fes1 Os09g0512700 protein (cDNA clone:001-029-B12, full insert sequence) Q0J0F7 Q0J0F7_ORYSJ Os09g0512700 Os09g0512700 OSNPB_090512700 ENOG411EKDE Q8GZ64,F4HZJ7,F4HZJ6 Q8GZ64_ARATH,F4HZJ7_ARATH,F4HZJ6_ARATH At1g15240 (Phox (PX) domain-containing protein) (Uncharacterized protein At1g15240) (Uncharacterized protein At1g15240/F9L1_19),Phox (PX) domain-containing protein 80069,114355,115388 At1g15240 (Phox (PX) domain-containing protein) (Uncharacterized protein At1g15240) (Uncharacterized protein At1g15240/F9L1_19),Phox (PX) domain-containing protein integral component of membrane [GO:0016021]; phosphatidylinositol binding [GO:0035091] locus:2037753; AT1G15240 phox (PX) domain-containing protein NA NA NA NA NA NA NA ENOG411EB1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EB19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os04g0508500 protein A0A0P0WCH5 A0A0P0WCH5_ORYSJ Os04g0508500 OSNPB_040508500 ENOG411DY56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Ananain, putative, expressed (Os11g0425100 protein) (cDNA clone:002-120-E11, full insert sequence),Os09g0381400 protein (cDNA clone:J023079N05, full insert sequence),Os09g0381400 protein (Fragment),Os11g0425100 protein (Fragment) Q2R5U8,Q0J238,A0A0P0XM25,A0A0P0Y1L0 Q2R5U8_ORYSJ,Q0J238_ORYSJ,A0A0P0XM25_ORYSJ,A0A0P0Y1L0_ORYSJ Os11g0425100 LOC_Os11g23770 Os11g0425100 OSNPB_110425100,Os09g0381400 Os09g0381400 OSNPB_090381400,Os09g0381400 OSNPB_090381400,Os11g0425100 OSNPB_110425100 ENOG411DY57 Q7Y217,Q67Z55,A0A1P8AMF3,A0A1P8AMC6 Q7Y217_ARATH,Q67Z55_ARATH,A0A1P8AMF3_ARATH,A0A1P8AMC6_ARATH Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) (Uncharacterized protein At1g75420),At1g19710 (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) (Uncharacterized protein At1g19710),UDP-Glycosyltransferase superfamily protein 51758,53738,42363,48776 Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) (Uncharacterized protein At1g75420),At1g19710 (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) (Uncharacterized protein At1g19710),UDP-Glycosyltransferase superfamily protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757],transferase activity [GO:0016740] locus:2018392;,locus:2013089; AT1G75420,AT1G19710 Glycosyl transferase Os01g0262600 protein Q5NBB8 Q5NBB8_ORYSJ Os01g0262600 Os01g0262600 OsJ_01190 OSNPB_010262600 P0469E09.24 ENOG411DY54 P0DO00,F4IAX0,F4IAX1 AMO2_ARATH,F4IAX0_ARATH,F4IAX1_ARATH Primary amine oxidase 2 (EC 1.4.3.21) (Amine oxidase [copper-containing] 2),Amine oxidase (EC 1.4.3.-) R-ATH-211945;R-ATH-6798695; 1.4.3.21; 1.4.3.21,1.4.3.- 75363,76674,76711 Primary amine oxidase 2 (EC 1.4.3.21) (Amine oxidase [copper-containing] 2),Amine oxidase (EC 1.4.3.-) aliphatic-amine oxidase activity [GO:0052595]; aminoacetone:oxygen oxidoreductase(deaminating) activity [GO:0052594]; copper ion binding [GO:0005507]; phenethylamine:oxygen oxidoreductase (deaminating) activity [GO:0052596]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; tryptamine:oxygen oxidoreductase (deaminating) activity [GO:0052593]; amine metabolic process [GO:0009308],copper ion binding [GO:0005507]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; amine metabolic process [GO:0009308] locus:2028666;,locus:2028636;,locus:2028606; AT1G31672,AT1G31690,AT1G31710 amine oxidase Amine oxidase (EC 1.4.3.-) Q5Z6D3,Q69KW1,A0A0P0WWN0 Q5Z6D3_ORYSJ,Q69KW1_ORYSJ,A0A0P0WWN0_ORYSJ Os06g0338200 OSNPB_060338200 P0427E01.36,Os07g0572100 Os07g0572100 OJ1121_A05.21 OSNPB_070572100,Os06g0338700 OSNPB_060338700 ENOG411DY55 GINS2,PSF2 Q9C7A8,A0A1I9LNY4,F4J9T0 PSF2_ARATH,A0A1I9LNY4_ARATH,F4J9T0_ARATH DNA replication complex GINS protein PSF2,PSF2 FUNCTION: The GINS complex plays an essential role in the initiation of DNA replication. {ECO:0000250}. R-ATH-176974; 24291,17200,22175 DNA replication complex GINS protein PSF2,PSF2 GINS complex [GO:0000811]; replication fork protection complex [GO:0031298]; DNA duplex unwinding [GO:0032508]; double-strand break repair via break-induced replication [GO:0000727]; mitotic DNA replication initiation [GO:1902975],nucleus [GO:0005634]; DNA replication [GO:0006260] locus:2101247; AT3G12530 DNA replication complex GINS protein PSF2 DNA replication complex GINS protein PSF2 Q9FTK2 Q9FTK2_ORYSJ Os01g0248600 OSNPB_010248600 P0034C11.24 ENOG411DY52 ATRX F4HW51 CHR20_ARATH Protein CHROMATIN REMODELING 20 (AtCHR20) (EC 3.6.4.-) (ATP-dependent helicase ATRX) (Transcriptional regulator ATRX) (X-linked helicase II) DISRUPTION PHENOTYPE: Slight sensivity to gamma-irradiation. {ECO:0000269|PubMed:16547115}. FUNCTION: Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes (By similarity). Involved in DNA repair of gamma-irradiation-mediated damages (PubMed:16547115). {ECO:0000250|UniProtKB:Q61687, ECO:0000269|PubMed:16547115}. 3.6.4.- 168176 Protein CHROMATIN REMODELING 20 (AtCHR20) (EC 3.6.4.-) (ATP-dependent helicase ATRX) (Transcriptional regulator ATRX) (X-linked helicase II) chromosome, telomeric region [GO:0000781]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2025560; AT1G08600 SNF2 family N-terminal domain Os10g0457700 protein (Fragment) A0A0P0XUY0 A0A0P0XUY0_ORYSJ Os10g0457700 OSNPB_100457700 ENOG411DY53 CSN2 Q8W207 CSN2_ARATH COP9 signalosome complex subunit 2 (Signalosome subunit 2) (Protein FUSCA 12) In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,In the homozygous progeny dark purple seeds.,Mutation is lethal in the homozygous state.,Lacks the intact COP9 signalosome (CSN). Rosette lethal; Red due to anthocyanin accumulation; Dwarf-X. Deng-2002 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. {ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:12615944}. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 51186 COP9 signalosome complex subunit 2 (Signalosome subunit 2) (Protein FUSCA 12) COP9 signalosome [GO:0008180]; cytosol [GO:0005829]; nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; multicellular organism development [GO:0007275]; negative regulation of transcription, DNA-templated [GO:0045892]; protein catabolic process [GO:0030163]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585] locus:2059289; AT2G26990 cop9 signalosome complex subunit Os01g0279200 protein,Os01g0279200 protein (Fragment) Q0JNL8,A0A0P0V1K9,A0A0P0V1P0 Q0JNL8_ORYSJ,A0A0P0V1K9_ORYSJ,A0A0P0V1P0_ORYSJ Os01g0279200 Os01g0279200 OsJ_01306 OSNPB_010279200,Os01g0279200 OSNPB_010279200 ENOG411DY50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit RING-type E3 ubiquitin transferase (EC 2.3.2.27) A0A0P0V0T6 A0A0P0V0T6_ORYSJ Os01g0229700 OSNPB_010229700 ENOG411DY5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor DP DP TF (Os10g0440100 protein) (Transcription factor E2F/dimerisation partner family protein, expressed),Os03g0152100 protein Q84VD5,A0A0N7KGL3 Q84VD5_ORYSJ,A0A0N7KGL3_ORYSJ Os10g0440100 LOC_Os10g30420 Os10g0440100 OSNPB_100440100,Os03g0152100 OSNPB_030152100 ENOG411DY5D SH3P3 Q8L7W0 SH3P3_ARATH SH3 domain-containing protein 3 FUNCTION: May be involved in the recruitment of DRP2A to the accessory protein complex and in the negative regulation of its GTPase activity. {ECO:0000305|PubMed:12207647}. 39534 SH3 domain-containing protein 3 clathrin-coated vesicle [GO:0030136] TISSUE SPECIFICITY: Detected in all tissues except seedlings. {ECO:0000269|PubMed:11701884}. locus:2117666; AT4G18060 Variant SH3 domain Os07g0508300 protein (Putative SH3(Src homology) domain-containing protein) (cDNA clone:J033071B14, full insert sequence),Os07g0508300 protein Q8LIJ9,A0A0N7KNI2 Q8LIJ9_ORYSJ,A0A0N7KNI2_ORYSJ OJ1163_G04.105 Os07g0508300 OsJ_24390 OSNPB_070508300,Os07g0508300 OSNPB_070508300 ENOG411DY5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor C-1a (Heat stress transcription factor 13) (rHsf13) (Heat stress transcription factor 2) (OsHsf-02) Q6VBA4 HFC1A_ORYSJ HSFC1A HSF02 HSF13 Os01g0625300 LOC_Os01g43590 OsJ_002575 OsJ_02668 P0006C01.11 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DY5A Q8L7N2 Q8L7N2_ARATH Pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (Uncharacterized protein At1g09150) 20457 Pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (Uncharacterized protein At1g09150) cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; RNA binding [GO:0003723]; formation of translation preinitiation complex [GO:0001731]; translation reinitiation [GO:0002188] locus:2195336; AT1G09150 PUA domain MCT-1 protein-like (Os01g0314300 protein) (cDNA clone:001-106-D01, full insert sequence) (cDNA clone:J033044B03, full insert sequence) Q8RZU5 Q8RZU5_ORYSJ Os01g0314300 Os01g0314300 B1011A07.51 B1012D10.2 OsJ_01493 OSNPB_010314300 ENOG411DY5N RPN3A,RPN3B Q9LNU4,Q9LQR8 PSD3A_ARATH,PSD3B_ARATH 26S proteasome non-ATPase regulatory subunit 3 homolog A (26S proteasome regulatory subunit RPN3a) (AtRPN3a) (26S proteasome regulatory subunit S3 homolog A) (Protein EMBRYO DEFECTIVE 2719) (Protein HAPLESS 15),26S proteasome non-ATPase regulatory subunit 3 homolog B (26S proteasome regulatory subunit RPN3b) (AtRPN3b) (26S proteasome regulatory subunit S3 homolog B) DISRUPTION PHENOTYPE: Short pollen tube growth and failure to exit the style. {ECO:0000269|PubMed:15514068}. Male gametophyte defective; Embryo defective-D. Meinke-2002 FUNCTION: Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250|UniProtKB:O43242}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 55582,55591 26S proteasome non-ATPase regulatory subunit 3 homolog A (26S proteasome regulatory subunit RPN3a) (AtRPN3a) (26S proteasome regulatory subunit S3 homolog A) (Protein EMBRYO DEFECTIVE 2719) (Protein HAPLESS 15),26S proteasome non-ATPase regulatory subunit 3 homolog B (26S proteasome regulatory subunit RPN3b) (AtRPN3b) (26S proteasome regulatory subunit S3 homolog B) cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; proteasome complex [GO:0000502]; proteasome regulatory particle, lid subcomplex [GO:0008541]; enzyme regulator activity [GO:0030234]; regulation of protein catabolic process [GO:0042176],cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; proteasome regulatory particle, lid subcomplex [GO:0008541]; enzyme regulator activity [GO:0030234]; protein catabolic process [GO:0030163]; regulation of protein catabolic process [GO:0042176]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}.,TISSUE SPECIFICITY: Preferentially expressed in flowers. {ECO:0000269|PubMed:14623884}. locus:2198561;,locus:2204385; AT1G20200,AT1G75990 26S proteasome non-atpase regulatory subunit Os08g0550100 protein (Putative 21D7),21D7 (Os09g0541900 protein) (Putative 26S proteasome non-ATPase regulatory subunit 3) (Putative nuclear antigen 21D7),Os09g0541900 protein (Fragment) Q6ZJI3,Q8W426,A0A0N7KR72 Q6ZJI3_ORYSJ,Q8W426_ORYSJ,A0A0N7KR72_ORYSJ Os08g0550100 Os08g0550100 OJ1479_B11.20 OSNPB_080550100,Os21D7 Os09g0541900 B1274F11.40 OsJ_30188 OSNPB_090541900 P0478E02.12,Os09g0541900 OSNPB_090541900 ENOG411DY5M YAB5 Q8GW46 YAB5_ARATH Axial regulator YABBY 5 DISRUPTION PHENOTYPE: Leaves polarity and growth defects. {ECO:0000269|PubMed:19837869}. FUNCTION: Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. 18505 Axial regulator YABBY 5 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of leaf development [GO:2000024]; regulation of shoot apical meristem development [GO:1902183]; regulation of transcription, DNA-templated [GO:0006355] locus:2066311; AT2G26580 axial regulator YABBY NA NA NA NA NA NA NA ENOG411DY5J Q9M7T1 Q9M7T1_ARATH Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (Uncharacterized protein At3g06040) (Uncharacterized protein F24F17.2) 20799 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (Uncharacterized protein At3g06040) (Uncharacterized protein F24F17.2) integral component of membrane [GO:0016021]; mitochondrial large ribosomal subunit [GO:0005762]; peptidase activity [GO:0008233]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543]; mitochondrial transport [GO:0006839] locus:2080369; AT3G06040 ribosomal protein Os02g0198900 protein (Ribosomal protein L12-like protein) (cDNA clone:J023041J19, full insert sequence) Q6H730 Q6H730_ORYSJ Os02g0198900 OsJ_05777 OSNPB_020198900 P0026H03.23 ENOG411DY5I CHX20 Q9M353,A0A1I9LL89 CHX20_ARATH,A0A1I9LL89_ARATH Cation/H(+) antiporter 20 (Protein CATION/H+ EXCHANGER 20) (AtCHX20),Cation/H+ exchanger 20 DISRUPTION PHENOTYPE: Impaired light-induced stomatal opening. {ECO:0000269|PubMed:17337534}. no visible phenotype. Showed 35% reduction in light-induced stomatal opening compared to wild type plants Reduced stomatal width-H. Sze-2007 FUNCTION: Operates as a K(+)/H(+) antiporter that maintains K(+) homeostasis in guard cells and could regulate pH. Plays a critical role in osmoregulation through the control of stomates opening. {ECO:0000269|PubMed:17337534}. 91553,83740 Cation/H(+) antiporter 20 (Protein CATION/H+ EXCHANGER 20) (AtCHX20),Cation/H+ exchanger 20 endomembrane system [GO:0012505]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; cellular potassium ion homeostasis [GO:0030007]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; protein targeting to vacuole [GO:0006623]; regulation of pH [GO:0006885]; water homeostasis [GO:0030104],integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299] TISSUE SPECIFICITY: Expressed in leaves and stems. Preferentially expressed in guards cells. {ECO:0000269|PubMed:15347787, ECO:0000269|PubMed:17337534}. locus:2084370; AT3G53720 cation H( Os05g0113300 protein Q0DLA4 Q0DLA4_ORYSJ Os05g0113300 Os05g0113300 OSNPB_050113300 ENOG411DY5V Q9SRE5,A0A1P8APU6 Y1666_ARATH,A0A1P8APU6_ARATH Uncharacterized protein At1g76660,Hydroxyproline-rich glycoprotein family protein 46430,35677 Uncharacterized protein At1g76660,Hydroxyproline-rich glycoprotein family protein plasma membrane [GO:0005886] locus:2030066; AT1G76660 NA Os01g0103800 protein (cDNA clone:J033107K12, full insert sequence),Os03g0270700 protein (Fragment) Q658D7,A0A0P0VW08 Q658D7_ORYSJ,A0A0P0VW08_ORYSJ Os01g0103800 Os01g0103800 OsJ_00030 OSNPB_010103800 P0436E04.10,Os03g0270700 OSNPB_030270700 ENOG411DY5W Q9SSE8 GLYT1_ARATH Probable glycosyltransferase At3g07620 (EC 2.4.-.-) FUNCTION: May be involved in cell wall biosynthesis. ARA:AT3G07620-MONOMER; 2.4.-.- 54691 Probable glycosyltransferase At3g07620 (EC 2.4.-.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2091122; AT3G07620 Exostosin family NA NA NA NA NA NA NA ENOG411DY5T ABCG26 Q9LK50 AB26G_ARATH ABC transporter G family member 26 (ABC transporter ABCG.26) (AtABCG26) (Putative white-brown complex homolog protein 27) (AtWBC27) Male sterile.Abnormal pollen wall development.,Mutant plants had very small siliques showing very low fertility. The the anther locules turned brown upon maturity and released fewer pollen grains than wildtype plants. Reduced fertility; Large seeds-Y. Lee-2011 77887 ABC transporter G family member 26 (ABC transporter ABCG.26) (AtABCG26) (Putative white-brown complex homolog protein 27) (AtWBC27) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; pollen development [GO:0009555]; pollen exine formation [GO:0010584]; pollen maturation [GO:0010152] locus:2090009; AT3G13220 ABC transporter G family member Os06g0609900 protein (cDNA clone:002-188-H06, full insert sequence),Os06g0607700 protein (Putative ATP-binding cassette transporter1) Q69XH7,Q69Q33 Q69XH7_ORYSJ,Q69Q33_ORYSJ Os06g0609900 OsJ_21944 OSNPB_060609900 P0490F09.12,Os06g0607700 Os06g0607700 OsJ_21924 OSNPB_060607700 P0029C06.32 P0556B08.8 ENOG411DY5U A0A1I9LNC1,B3H494,A0A1I9LNC2,F4J5D3 A0A1I9LNC1_ARATH,B3H494_ARATH,A0A1I9LNC2_ARATH,F4J5D3_ARATH KRR1 family protein 73759,74159,73959,74960 KRR1 family protein 90S preribosome [GO:0030686]; cytosol [GO:0005829]; nucleolus [GO:0005730]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447] locus:2076126; AT3G24080 protein KRI1 homolog Os05g0490000 protein (Fragment) A0A0P0WP57 A0A0P0WP57_ORYSJ Os05g0490000 OSNPB_050490000 ENOG411DY5R O82263 O82263_ARATH At2g47960/T9J23.10 (Expressed protein) (Trafficking protein particle complex subunit-like protein) (Uncharacterized protein At2g47960) R-ATH-8876198; 49290 At2g47960/T9J23.10 (Expressed protein) (Trafficking protein particle complex subunit-like protein) (Uncharacterized protein At2g47960) locus:2043433; AT2G47960 Protein of unknown function (DUF974) NA NA NA NA NA NA NA ENOG411DY5S MDA7.12,MDA7.9 Q56Y59,Q9FKU0,Q9FKU2 Q56Y59_ARATH,Q9FKU0_ARATH,Q9FKU2_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At4g26490),Uncharacterized protein,Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein 30947,13977,32259 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At4g26490),Uncharacterized protein,Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein integral component of membrane [GO:0016021] locus:2131478;,locus:2161755;,locus:2161835; AT4G26490,AT5G56070,AT5G56050 Late embryogenesis abundant protein Os08g0494000 protein (cDNA clone:002-171-C09, full insert sequence) Q6Z8S6 Q6Z8S6_ORYSJ Os08g0494000 Os08g0494000 OsJ_27779 OSNPB_080494000 P0686H11.32 ENOG411DY5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Eukaryotic aspartyl protease family protein (Os10g0539000 protein) (Putative nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein, expressed (Os12g0583300 protein),Eukaryotic aspartyl protease family protein, expressed (Os10g0538900 protein) (Putative nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein, expressed (Os10g0538400 protein) (Putative nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein (Os10g0538700 protein) (Putative nucleoid DNA binding protein),Eukaryotic aspartyl protease family protein, expressed (Os10g0538200 protein) (Putative nucleoid DNA binding protein) (cDNA clone:006-205-E10, full insert sequence),Eukaryotic aspartyl protease family protein, expressed (Os10g0537800 protein) (Putative nucleoid DNA binding protein) (cDNA clone:006-212-F01, full insert sequence),Os05g0375700 protein,Os10g0538800 protein,Os03g0586099 protein (Fragment),Os10g0538500 protein Q8LNM1,Q2QN11,Q8LNM2,Q8LNM6,Q8LNM4,Q8LNM7,Q8LNN1,Q6AUQ1,A0A0N7KS51,A0A0P0VZS7,A0A0P0XWR6 Q8LNM1_ORYSJ,Q2QN11_ORYSJ,Q8LNM2_ORYSJ,Q8LNM6_ORYSJ,Q8LNM4_ORYSJ,Q8LNM7_ORYSJ,Q8LNN1_ORYSJ,Q6AUQ1_ORYSJ,A0A0N7KS51_ORYSJ,A0A0P0VZS7_ORYSJ,A0A0P0XWR6_ORYSJ OSJNBa0040D23.23 Os10g0539000 LOC_Os10g39360 OsJ_32300 OSNPB_100539000,LOC_Os12g39360 Os12g0583300 OSNPB_120583300,OSJNBa0040D23.22 Os10g0538900 LOC_Os10g39350 OSNPB_100538900,OSJNBa0040D23.18 Os10g0538400 LOC_Os10g39310 OSNPB_100538400,OSJNBa0040D23.20 Os10g0538700 LOC_Os10g39330 OSNPB_100538700,OSJNBa0040D23.17 LOC_Os10g39300 Os10g0538200 OSNPB_100538200,OSJNBa0040D23.12 LOC_Os10g39260 Os10g0537800 OSNPB_100537800,Os05g0375700 OSJNBa0007A06.3 OSNPB_050375700,Os10g0538800 OSNPB_100538800,Os03g0586099 OSNPB_030586099,Os10g0538500 OSNPB_100538500 ENOG411DY5Z BZIP63,BZO2H3 B9DGI8,A0A1P8BBW4 BZP63_ARATH,A0A1P8BBW4_ARATH Basic leucine zipper 63 (AtbZIP63) (bZIP protein 63) (Basic leucine zipper OPAQUE 2 homolog 3) (Basic leucine zipper O2 homolog 3),BZIP transcription factor family protein FUNCTION: Transcription factor. {ECO:0000250}. 34311,24551 Basic leucine zipper 63 (AtbZIP63) (bZIP protein 63) (Basic leucine zipper OPAQUE 2 homolog 3) (Basic leucine zipper O2 homolog 3),BZIP transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to glucose stimulus [GO:0071333]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] DEVELOPMENTAL STAGE: Present in silique valves, vasculature and funiculi. {ECO:0000269|PubMed:18841482}. TISSUE SPECIFICITY: Expressed in roots, shoots, young leaves, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. locus:2184251; AT5G28770 Transcription factor bZIP transcription factor RISBZ1 (Rice seed bZIP1) (bZIP transcription factor 58) (OsbZIP58),bZIP transcription factor RISBZ2 (Rice endosperm bZIP) (Rice seed bZIP2) (bZIP transcription factor 33) (OsbZIP33) Q6ZLB0,Q7X9A8 RSBZ1_ORYSJ,RSBZ2_ORYSJ RISBZ1 BZIP58 Os07g0182000 LOC_Os07g08420 OJ1014_E09.42 OsJ_23334,RISBZ2 BZIP33 REB Os03g0796900 LOC_Os03g58250 OSJNBa0094F01.19 FUNCTION: Transcriptional activator that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. Involved in the endosperm-specific regulation of storage protein genes (PubMed:15685292). Can activate the expression of genes encoding for the seed storage proteins glutelin, prolamin, globulin and the allergen RAG1. Functions synergistically with DOF3/RPBF to positively regulate quantitatively many seed storage protein genes (PubMed:16798940, PubMed:19473328). Functions synergistically with DOF3/RPBF to positively regulate some metabolic enzymes, such as alanine aminotransferase and pyruvate phosphate dikinase, that are expressed in developing seeds (PubMed:16798940). Functions synergistically with DOF3/RPBF to positively regulate genes that are key players in the development of aleurone layers (PubMed:19473328). Functions synergistically with DOF3/RPBF to positively regulate the glutelin GLUD-1 gene in endosperm of developing seeds (PubMed:18980953). Can activate the expression of the bifunctional lysine-degrading enzyme, lysine ketoglutarate reductase/saccharopine dehydrogenase (LKR/SDH), one of the key regulators determining free lysine content in plants (PubMed:21037241). Functions as a key regulator of starch synthesis in seeds, by direct binding to the promoters of starch-synthesizing genes, such as AGPL3, WAXXY and SBE1 (PubMed:23846875). {ECO:0000269|PubMed:15685292, ECO:0000269|PubMed:16798940, ECO:0000269|PubMed:18980953, ECO:0000269|PubMed:19473328, ECO:0000269|PubMed:21037241, ECO:0000269|PubMed:23846875}.,FUNCTION: Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}. ENOG411DY5X GLYI8 Q9SKM8 Q9SKM8_ARATH Expressed protein (Lactoylglutathione lyase / glyoxalase I family protein) 21002 Expressed protein (Lactoylglutathione lyase / glyoxalase I family protein) lyase activity [GO:0016829] locus:2057522; AT2G28420 Lactoylglutathione lyase Glyoxalase family-like protein (Os07g0657100 protein) Q7EYX8 Q7EYX8_ORYSJ P0047B07.119 Os07g0657100 OsJ_25424 OSNPB_070657100 ENOG411E2QC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML16 (Calmodulin-like protein 16) Q5ZCK5 CML16_ORYSJ CML16 Os01g0135700 LOC_Os01g04330 OsJ_000267 OSJNBa0083M16.46 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E2QA ASK13,ASK8,ASK10,ASK11,ASK6,ASK9,ASK5,ASK12,ASK7,SKP1B,SKP1A Q9M1X5,Q9LSY1,Q9LSX8,O49484,Q1PEF6,Q9LSX9,Q9M1X4,O65674,Q9LSY0,Q9FHW7,Q39255 ASK13_ARATH,ASK8_ARATH,ASK10_ARATH,ASK11_ARATH,ASK6_ARATH,ASK9_ARATH,ASK5_ARATH,ASK12_ARATH,ASK7_ARATH,SKP1B_ARATH,SKP1A_ARATH SKP1-like protein 13 (AtSK13),SKP1-like protein 8 (AtSK8),SKP1-like protein 10 (AtSK10),SKP1-like protein 11 (AtSK11),SKP1-like protein 6 (AtSK6),SKP1-like protein 9 (AtSK9),SKP1-like protein 5 (AtSK5),SKP1-like protein 12 (AtSK12),SKP1-like protein 7 (AtSK7),SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2),SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1) Male sterile; Defective in homolog separation-H. Ma-1999 FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). {ECO:0000250}.,FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development. {ECO:0000250, ECO:0000269|PubMed:12970487}.,FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation. {ECO:0000269|PubMed:10398681, ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14688296}.,FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation. {ECO:0000269|PubMed:10398681, ECO:0000269|PubMed:10500191, ECO:0000269|PubMed:10528262, ECO:0000269|PubMed:11526079, ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14688296}. MISCELLANEOUS: May be the product of a pseudogene. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664;R-ATH-983168; 17234,17493,17573,17288,9791,17439,17444,17363,14454,19097,17857 SKP1-like protein 13 (AtSK13),SKP1-like protein 8 (AtSK8),SKP1-like protein 10 (AtSK10),SKP1-like protein 11 (AtSK11),SKP1-like protein 6 (AtSK6),SKP1-like protein 9 (AtSK9),SKP1-like protein 5 (AtSK5),SKP1-like protein 12 (AtSK12),SKP1-like protein 7 (AtSK7),SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2),SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1) nucleus [GO:0005634]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; protein ubiquitination [GO:0016567]; regulation of mitotic cell cycle [GO:0007346]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; chromosome segregation [GO:0007059]; embryo development ending in seed dormancy [GO:0009793]; ethylene-activated signaling pathway [GO:0009873]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511]; viral process [GO:0016032],cytosol [GO:0005829]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; spindle [GO:0005819]; auxin-activated signaling pathway [GO:0009734]; chromosome segregation [GO:0007059]; ethylene-activated signaling pathway [GO:0009873]; microtubule cytoskeleton organization [GO:0000226]; multicellular organism development [GO:0007275]; negative regulation of DNA recombination [GO:0045910]; protein ubiquitination [GO:0016567]; response to cadmium ion [GO:0046686]; ubiquitin-dependent protein catabolic process [GO:0006511]; viral process [GO:0016032] DEVELOPMENTAL STAGE: Expressed in the inflorescence meristem (IM) and young buds, particularly in stamen. Also detected in pollen grains. {ECO:0000269|PubMed:12970487}.,DEVELOPMENTAL STAGE: In young buds, confined to sepals and pedicels. {ECO:0000269|PubMed:12970487}.,DEVELOPMENTAL STAGE: Expressed during all stages of embryogenesis. {ECO:0000269|PubMed:14688296}.,DEVELOPMENTAL STAGE: During flower development, expressed in the tapetal layer surrounding the male microsporocytes, and in the endothelium layer surrounding the embryo sac within the ovule. During embryogenesis, expressed in all cells of the embryo and in developing endosperm surrounding the embryo, at the time of free nuclei proliferation. {ECO:0000269|PubMed:9530878}. TISSUE SPECIFICITY: Mostly expressed in inflorescences, and, to a lower extent, in seedlings and siliques. Also detected in cotyledons, leaves, pollen and seeds. {ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14749489}.,TISSUE SPECIFICITY: Restricted to siliques. {ECO:0000269|PubMed:12970487}.,TISSUE SPECIFICITY: Expressed in young seedlings, roots, leaves, floral stems, inflorescences, and siliques. {ECO:0000269|PubMed:12970487}.,TISSUE SPECIFICITY: Expressed in young seedlings, cotyledons, roots, leaves, floral stems, inflorescences, pollen, and siliques, with a slightly higher level in inflorescence than in other tissues. {ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14749489}.,TISSUE SPECIFICITY: Expressed in leaves, shoot apical meristem (SAM), roots, flowers and pollen. {ECO:0000269|PubMed:14749489}.,TISSUE SPECIFICITY: Restricted to inflorescences, especially in the inflorescence meristem (IM). {ECO:0000269|PubMed:12970487}.,TISSUE SPECIFICITY: Expressed in young seedlings, roots, leaves, floral stems, inflorescences, and siliques, with a slightly higher level in inflorescence than in other tissues. {ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14749489}.,TISSUE SPECIFICITY: Expressed in tips, cortical layer and epidermis of roots. Detected in whole seedling, vascular tissues, pith and vascular bundle of young stem, leaves, inflorescence meristem, young floral buds and organ primordia, flowers, developing seeds and through the valve of siliques. Expressed in male meiocytes, pollen, embryo and endosperm. {ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14688296, ECO:0000269|PubMed:14749489}.,TISSUE SPECIFICITY: Accumulates only in meristematic cells. Expressed in inflorescence, shoot and root apical meristems, as well as in developing organs such as gametocytes and seeds. Also detected in cortical layer and epidermis of roots, leaves, pith and vascular bundle of young stem, young floral buds and organ primordia, pollen and through the valve of siliques. Not detectable in mature root tissues. {ECO:0000269|PubMed:10607296, ECO:0000269|PubMed:12970487, ECO:0000269|PubMed:14688296, ECO:0000269|PubMed:14749489, ECO:0000269|PubMed:9530878}. locus:2080532;,locus:2093064;,locus:2093094;,locus:2124281;,locus:2085201;,locus:2093084;,locus:2080542;,locus:2139504;,locus:2093074;,locus:2165825;,locus:2204435; AT3G60010,AT3G21830,AT3G21860,AT4G34210,AT3G53060,AT3G21850,AT3G60020,AT4G34470,AT3G21840,AT5G42190,AT1G75950 SKP1-like protein SKP1-like protein 1 (SKP1-like 1),Os07g0625600 protein,Os09g0273800 protein (Putative SKP1) (cDNA clone:002-135-C08, full insert sequence),Os09g0274700 protein (Putative SKP1),Os07g0624900 protein (Putative Skp1(S-phase kinase-associated protein 1)) (Putative Skp1(S-phase kinase-associated protein1)),Os07g0145300 protein (Putative Skp1),Os08g0375700 protein (Putative SKP1-like protein) (SKP1),Os07g0625500 protein (Putative Skp1(S-phase kinase-associated protein1)) (cDNA clone:002-113-F08, full insert sequence),Os09g0274800 protein (Putative SKP1),Os09g0539500 protein (Putative UIP2) (cDNA, clone: J065208D18, full insert sequence),Os07g0625200 protein,Os07g0409500 protein (UIP2-like protein) (cDNA clone:J033085C17, full insert sequence),Os08g0375500 protein (Putative SKP1),Os07g0625300 protein,Os02g0101600 protein,Os09g0412050 protein,Os11g0456300 protein (Fragment),Os07g0144900 protein (Fragment) Q6PL11,A3BMD4,Q6H5Q8,Q6H4D6,Q8L561,Q8H5C3,Q8GVW5,Q8LI46,Q6H4D4,Q651E8,Q8LI49,Q7XAL5,Q6ZDJ1,Q8LI48,A0A0P0VDK6,A0A0P0XN22,A0A0N7KSW2,A0A0P0X2H5 SKP1_ORYSJ,A3BMD4_ORYSJ,Q6H5Q8_ORYSJ,Q6H4D6_ORYSJ,Q8L561_ORYSJ,Q8H5C3_ORYSJ,Q8GVW5_ORYSJ,Q8LI46_ORYSJ,Q6H4D4_ORYSJ,Q651E8_ORYSJ,Q8LI49_ORYSJ,Q7XAL5_ORYSJ,Q6ZDJ1_ORYSJ,Q8LI48_ORYSJ,A0A0P0VDK6_ORYSJ,A0A0P0XN22_ORYSJ,A0A0N7KSW2_ORYSJ,A0A0P0X2H5_ORYSJ SKP1 OSK1 LOC_Os11g26910 Os11g0456300 OsJ_33809 OSNPB_110456300,Os07g0625600 OsJ_25192 OSNPB_070625600,Os09g0273800 OJ1031_C12.26 OsJ_28630 OSNPB_090273800,Os09g0274700 OJ1031_C12.36 OsJ_28634 OSJNBb0012I09.3 OSNPB_090274700,OJ1339_F05.101 Os07g0624900 P0524E08.135 OSNPB_070624900,OJ1343_B12.137 Os07g0145300 OsJ_23075 OSJNBa0077B15.115 OSNPB_070145300,OJ1705_C03.102 Os08g0375700 OsJ_27112 OSNPB_080375700 P0436B06.28,OJ1339_F05.112 Os07g0625500 OsJ_25191 OSNPB_070625500,Os09g0274800 OJ1031_C12.39 OsJ_28635 OSJNBb0012I09.6 OSNPB_090274800,Os09g0539500 B1274F11.9 OsJ_30167 OSNPB_090539500,OJ1339_F05.108 Os07g0625200 OsJ_25188 OSNPB_070625200,P0492E07.120 Os07g0409500 OsJ_23935 OSNPB_070409500,Os08g0375500 OsJ_27113 OSNPB_080375500 P0436B06.24,OJ1339_F05.110 Os07g0625300 OsJ_25189 OSNPB_070625300,Os02g0101600 OSNPB_020101600,Os09g0412050 OSNPB_090412050,Os11g0456300 OSNPB_110456300,Os07g0144900 OSNPB_070144900 FUNCTION: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, a RING-box and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. {ECO:0000250|UniProtKB:Q9FHW7}. ENOG411E2QN MHM17.18 Q9LTR8 Q9LTR8_ARATH At5g57040 (Gb|AAD55473.1) (Lactoylglutathione lyase / glyoxalase I family protein) (Uncharacterized protein At5g57040) 22247 At5g57040 (Gb|AAD55473.1) (Lactoylglutathione lyase / glyoxalase I family protein) (Uncharacterized protein At5g57040) chloroplast [GO:0009507]; lyase activity [GO:0016829] locus:2164600; AT5G57040 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Os07g0160400 protein Q0D8H0 Q0D8H0_ORYSJ Os07g0160400 Os07g0160400 OsJ_23167 OSNPB_070160400 ENOG411E2QM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0768900 protein A0A0P0W405 A0A0P0W405_ORYSJ Os03g0768900 OSNPB_030768900 ENOG411E2QJ Q9LYD7 Q9LYD7_ARATH ARM repeat superfamily protein (Uncharacterized protein At5g11550) (Uncharacterized protein F15N18_140) 33305 ARM repeat superfamily protein (Uncharacterized protein At5g11550) (Uncharacterized protein F15N18_140) locus:2144261; AT5G11550 NA Os05g0559350 protein A0A0P0WQ80 A0A0P0WQ80_ORYSJ Os05g0559350 OSNPB_050559350 ENOG411E2QZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF623 domain containing protein expressed Transcription repressor OFP8 (OVATE family protein 8) (OsOFP8) Q94CV1 OFP8_ORYSJ OFP8 Os01g0864000 LOC_Os01g64430 OsJ_04171 P0423B08.30 FUNCTION: Probable transcriptional repressor that regulates multiple aspects of plant growth and development, partly through brassinosteroid (BR) signaling pathway. Acts downstream of the kinase GSK2, a negative regulator of BR signaling. {ECO:0000269|PubMed:27332964}. MISCELLANEOUS: The gain-of-function mutant ofp8 (T-DNA tagging) shows an enhanced lamina joint inclination at the maturation stage. Plants silencing OFP8 have a marked upright leaf phenotype and are insensitive to brassinolide. {ECO:0000269|PubMed:27332964}. ENOG411E2QX UBC36,UBC35 Q9FZ48,Q94A97,F4I615 UBC36_ARATH,UBC35_ARATH,F4I615_ARATH Ubiquitin-conjugating enzyme E2 36 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 36) (Ubiquitin carrier protein 36),Ubiquitin-conjugating enzyme E2 35 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 35) (Ubiquitin carrier protein 35),Ubiquitin-conjugating enzyme 36 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions or in phosphate-deficient plants. Unable to form branched root hairs in response to iron-deficient conditions. {ECO:0000269|PubMed:20113438}. Abnormal root hair growth in response to iron starvation-W. Schmidt-2010 FUNCTION: Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Required for postreplication repair of UV-damaged DNA and for adapting root developmental programs to suboptimal availability of iron. {ECO:0000269|PubMed:16339806, ECO:0000269|PubMed:16786304, ECO:0000269|PubMed:20113438}. MISCELLANEOUS: Partly functionally redundant with UBC35.,MISCELLANEOUS: Partly functionally redundant with UBC36. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. R-ATH-446652;R-ATH-5693565; 2.3.2.23 17220,17192,18215 Ubiquitin-conjugating enzyme E2 36 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 36) (Ubiquitin carrier protein 36),Ubiquitin-conjugating enzyme E2 35 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 35) (Ubiquitin carrier protein 35),Ubiquitin-conjugating enzyme 36 nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; postreplication repair [GO:0006301]; protein K63-linked ubiquitination [GO:0070534],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; postreplication repair [GO:0006301]; protein K63-linked ubiquitination [GO:0070534]; response to cadmium ion [GO:0046686]; response to iron ion [GO:0010039]; root epidermal cell differentiation [GO:0010053]; ubiquitin-dependent protein catabolic process [GO:0006511],cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ubiquitin-protein transferase activity [GO:0004842]; response to iron ion [GO:0010039]; root epidermal cell differentiation [GO:0010053]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitously expressed at low level. {ECO:0000269|PubMed:16786304}.,TISSUE SPECIFICITY: Ubiquitously expressed at low level. Mainly expressed in the vasculature. {ECO:0000269|PubMed:16339806, ECO:0000269|PubMed:16786304, ECO:0000269|PubMed:20113438}. locus:2037553;,locus:2015581; AT1G16890,AT1G78870 Ubiquitin-conjugating enzyme Os01g0673600 protein (Putative ubiquitin-conjugating enzyme E2) (Ubiquitin conjugated enzyme) (cDNA clone:J033117D10, full insert sequence) Q8W0I1 Q8W0I1_ORYSJ Os01g0673600 Os01g0673600 OsJ_02975 OSNPB_010673600 P0007F06.32 P0485G01.22 ENOG411DTQ3 MRE11 Q9XGM2,A0A1P8BB63 MRE11_ARATH,A0A1P8BB63_ARATH Double-strand break repair protein MRE11 (AtMre11),DNA repair and meiosis protein (Mre11) High levels of double-strand breaks.,Hyperaccumulation of AtSPO11-1 in meiocytes.,The mutant showed vegetative growth defects and sterility. Dwarf; Sterile; Long telomeres; Sensitive to genotoxic stress-P. Bundock-2002 FUNCTION: Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing (By similarity). {ECO:0000250|UniProtKB:P32829}. R-ATH-1834949;R-ATH-2559586;R-ATH-5685939;R-ATH-5693548;R-ATH-5693565;R-ATH-5693607;R-ATH-5693616; 80291,80773 Double-strand break repair protein MRE11 (AtMre11),DNA repair and meiosis protein (Mre11) chromatin [GO:0000785]; euchromatin [GO:0000791]; Mre11 complex [GO:0030870]; synaptonemal complex [GO:0000795]; 3'-5' exonuclease activity [GO:0008408]; endonuclease activity [GO:0004519]; manganese ion binding [GO:0030145]; double-strand break repair [GO:0006302]; meiotic cell cycle [GO:0051321],Mre11 complex [GO:0030870]; 3'-5' exonuclease activity [GO:0008408]; endonuclease activity [GO:0004519]; manganese ion binding [GO:0030145]; double-strand break repair [GO:0006302]; meiotic cell cycle [GO:0051321] locus:2162615; AT5G54260 double-strand break repair protein Double-strand break repair protein MRE11 (OsMre11),Os08g0177600 protein (Fragment) Q7XQR9,A0A0N7KPD1 MRE11_ORYSJ,A0A0N7KPD1_ORYSJ MRE11 Os04g0635900 OsJ_16317 OSJNBa0043L09.28,Os08g0177600 OSNPB_080177600 FUNCTION: Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. {ECO:0000250|UniProtKB:P32829}. ENOG411DTQ2 MYH9.5,MVP7.3 Q9FIC2,Q9FGG2,F4KF33 Q9FIC2_ARATH,Q9FGG2_ARATH,F4KF33_ARATH Emb|CAB71880.1 (Putative endonuclease or glycosyl hydrolase),Putative endonuclease or glycosyl hydrolase 102367,94055,80369 Emb|CAB71880.1 (Putative endonuclease or glycosyl hydrolase),Putative endonuclease or glycosyl hydrolase mitochondrion [GO:0005739]; peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468],mitochondrion [GO:0005739]; peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; mitochondrial RNA 5'-end processing [GO:0000964]; regulation of gene expression [GO:0010468],peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468] locus:2178163;,locus:2176075; AT5G09840,AT5G64710 Pfam:DUF88 Expressed protein (Os11g0167300 protein),Os12g0162900 protein Q53PU9,A0A0P0Y7E4 Q53PU9_ORYSJ,A0A0P0Y7E4_ORYSJ LOC_Os11g06680 Os11g0167300 OSNPB_110167300,Os12g0162900 OSNPB_120162900 ENOG411DTQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aluminium activated malate transporter Os02g0673000 protein (Fragment),OSJNBa0005N02.7 protein (Os04g0567200 protein) C7IYF6,Q7XSA0 C7IYF6_ORYSJ,Q7XSA0_ORYSJ Os02g0673000 Os02g0673000 OSNPB_020673000,Os04g0567200 OsJ_15815 OSJNBa0005N02.7 OSNPB_040567200 ENOG411DTQ0 HHP1 Q93ZH9 HHP1_ARATH Heptahelical transmembrane protein 1 (PAQR family protein HHP1) DISRUPTION PHENOTYPE: Reduced apical meristem dominance and length of hypocotyl, and increased cotyledon curling. Mutant plants are hypersensitive to ABA and osmotic stress. {ECO:0000269|PubMed:19286917}. Sensitive to ABA and osmotic stress-C. Yang-2009 FUNCTION: May act as a negative regulator of abscisic acid (ABA)-mediated osmotic stress signaling and function in cross-talk between cold and osmotic signaling. {ECO:0000269|PubMed:19286917, ECO:0000269|PubMed:20566565}. 37877 Heptahelical transmembrane protein 1 (PAQR family protein HHP1) integral component of membrane [GO:0016021]; receptor activity [GO:0004872]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; response to hormone [GO:0009725]; response to salt stress [GO:0009651]; response to sucrose [GO:0009744] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, vasculature of cotyledons and leaves, hydathodes and guard cells. In reproductive organs, expressed in trichomes, veins of sepals, stamens and stigmata of pistils. {ECO:0000269|PubMed:16263907, ECO:0000269|PubMed:19286917, ECO:0000269|PubMed:20566565}. locus:2149319; AT5G20270 receptor Heptahelical transmembrane protein ADIPOR1 (PAQR family protein ADIPOR1) B7F9G7 ADPO1_ORYSJ ADIPOR1 Os06g0643700 LOC_Os06g43620 P0017B12.2 P0416A11.35 FUNCTION: May play a role in abiotic stress response. {ECO:0000250}. ENOG411DTQ7 CPN60,HSP60-2 Q8L7B5,P29197,F4IVR2 CH60B_ARATH,CH60A_ARATH,F4IVR2_ARATH Chaperonin CPN60-like 1, mitochondrial (HSP60-like 1),Chaperonin CPN60, mitochondrial (HSP60),Heat shock protein 60-2 FUNCTION: Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix (By similarity). {ECO:0000250}.,FUNCTION: Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix. Legionellosis (05134),RNA degradation (03018),Type I diabetes mellitus (04940),Tuberculosis (05152) 61978,61281,61478 Chaperonin CPN60-like 1, mitochondrial (HSP60-like 1),Chaperonin CPN60, mitochondrial (HSP60),Heat shock protein 60-2 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; protein import into mitochondrial intermembrane space [GO:0045041]; protein refolding [GO:0042026]; response to cytokinin [GO:0009735],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; protein binding involved in protein folding [GO:0044183]; structural constituent of ribosome [GO:0003735]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; mitochondrion organization [GO:0007005]; protein import into mitochondrial intermembrane space [GO:0045041]; protein refolding [GO:0042026]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; ribosome assembly [GO:0042255],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein refolding [GO:0042026] locus:2046590;,locus:2076081; AT2G33210,AT3G23990 Chaperonin 60 kDa chaperonin (Mitochondrial chaperonin-60) (Os10g0462900 protein),Chaperonin (Chaperonin CPN60-1, mitochondrial, putative, expressed) (Os03g0143400 protein) (cDNA clone:J033073C08, full insert sequence) Q8H903,Q10RW9 Q8H903_ORYSJ,Q10RW9_ORYSJ Os10g0462900 Os10g0462900 OsJ_31804 OSJNBa0071K18.10 OSNPB_100462900,Os03g0143400 LOC_Os03g04970 Os03g0143400 OsJ_09368 OSNPB_030143400 ENOG411DTQ6 RE,RER1 B9DFK5,Q9FGP9 RETIC_ARATH,RER1_ARATH Protein RETICULATA, chloroplastic (Protein LOWER CELL DENSITY 1),Protein RETICULATA-RELATED 1, chloroplastic DISRUPTION PHENOTYPE: Pale interveinal phenotype due to marked reduction in the density of mesophyll cells in interveinal regions of leaves (PubMed:12848826, PubMed:16873448). Increased sensitivity to ozone and a virulent strain of the bacterial pathogen Pseudomonas syringae pv. maculicola (PubMed:12848826). {ECO:0000269|PubMed:12848826, ECO:0000269|PubMed:16873448}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23596191}. Pale plants in response to ozone-P. Conklin-2002 FUNCTION: May play a role in leaf development. Required for leaf mesophyll cell division in the early stages of leaf organogenesis (PubMed:12848826, PubMed:16873448). Acts in a developmental pathway that involves PPT1/CUE1 but does not include ASE2/DOV1 (PubMed:16873448). {ECO:0000269|PubMed:12848826, ECO:0000269|PubMed:16873448}.,FUNCTION: May play a role in leaf development. {ECO:0000305|PubMed:23596191}. 46629,46832 Protein RETICULATA, chloroplastic (Protein LOWER CELL DENSITY 1),Protein RETICULATA-RELATED 1, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; leaf development [GO:0048366]; photoperiodism [GO:0009648]; response to reactive oxygen species [GO:0000302],chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: During embryo development, expressed from torpedo stage onwards. {ECO:0000269|PubMed:23596191}. TISSUE SPECIFICITY: Highly expressed in the vasculature of developing leaf primordia, margins of fully expanded leaves, hydathodes of rosette of cauline leaves, basal region of the lamina, stipules, root tips, stamens and in the abscission zone of the funiculus. {ECO:0000269|PubMed:16873448}.,TISSUE SPECIFICITY: Expressed in root vasculature, distal region of young leaf primordia, leaf bundle sheath cells, hydathodes and pollen grains. {ECO:0000269|PubMed:23596191}. locus:2065649;,locus:2158155; AT2G37860,AT5G22790 Domain of unknown function (DUF3411) Expressed protein (Os11g0432800 protein) (cDNA clone:002-129-B11, full insert sequence),Os03g0390900 protein (Fragment),Os04g0524400 protein Q53PA2,A0A0P0VZ23,A0A0P0WCK1 Q53PA2_ORYSJ,A0A0P0VZ23_ORYSJ,A0A0P0WCK1_ORYSJ LOC_Os11g24500 Os11g0432800 OSNPB_110432800,Os03g0390900 OSNPB_030390900,Os04g0524400 OSNPB_040524400 ENOG411DTQ5 UBC25,UBC26,UBC39,UBC38 Q9LUQ5,Q8GY87,F4HPP7,Q9C918,A0A1P8AUV7 UBC25_ARATH,UBC26_ARATH,UBC39_ARATH,UBC38_ARATH,A0A1P8AUV7_ARATH Probable ubiquitin-conjugating enzyme E2 25 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 25) (Ubiquitin carrier protein 25),Probable ubiquitin-conjugating enzyme E2 26 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 26) (Ubiquitin carrier protein 26),Putative ubiquitin-conjugating enzyme E2 39 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 39) (Ubiquitin carrier protein 39),Putative ubiquitin-conjugating enzyme E2 38 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 38) (Ubiquitin carrier protein 38),Ubiquitin-conjugating enzyme family protein FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 67769,60552,36488,37292,62103 Probable ubiquitin-conjugating enzyme E2 25 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 25) (Ubiquitin carrier protein 25),Probable ubiquitin-conjugating enzyme E2 26 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 26) (Ubiquitin carrier protein 26),Putative ubiquitin-conjugating enzyme E2 39 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 39) (Ubiquitin carrier protein 39),Putative ubiquitin-conjugating enzyme E2 38 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 38) (Ubiquitin carrier protein 38),Ubiquitin-conjugating enzyme family protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625] TISSUE SPECIFICITY: Expressed in seeds, pistils, siliques, hypocotyls and leaves. {ECO:0000269|PubMed:16339806}. locus:2090096;,locus:6530298163;,locus:6530298162; AT3G15355,AT1G53025,AT1G53023,AT1G53020 ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411DTQ4 PME51,PME64 Q9LXD9,Q8L7Q7,A0A1P8BD08 PME51_ARATH,PME64_ARATH,A0A1P8BD08_ARATH Probable pectinesterase/pectinesterase inhibitor 51 [Includes: Pectinesterase inhibitor 51 (Pectin methylesterase inhibitor 51); Pectinesterase 51 (PE 51) (EC 3.1.1.11) (Pectin methylesterase 51) (AtPME51)],Probable pectinesterase/pectinesterase inhibitor 64 [Includes: Pectinesterase inhibitor 64 (Pectin methylesterase inhibitor 64); Pectinesterase 64 (PE 64) (EC 3.1.1.11) (Pectin methylesterase 64) (AtPME64)],Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589, ECO:0000256|SAAS:SAAS00560367}. ARA:AT5G09760-MONOMER;,ARA:AT5G64640-MONOMER; 3.1.1.11; 3.1.1.11 60439,65478,63504 Probable pectinesterase/pectinesterase inhibitor 51 [Includes: Pectinesterase inhibitor 51 (Pectin methylesterase inhibitor 51); Pectinesterase 51 (PE 51) (EC 3.1.1.11) (Pectin methylesterase 51) (AtPME51)],Probable pectinesterase/pectinesterase inhibitor 64 [Includes: Pectinesterase inhibitor 64 (Pectin methylesterase inhibitor 64); Pectinesterase 64 (PE 64) (EC 3.1.1.11) (Pectin methylesterase 64) (AtPME64)],Pectinesterase (EC 3.1.1.11) cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; integral component of membrane [GO:0016021]; aspartyl esterase activity [GO:0045330]; enzyme inhibitor activity [GO:0004857]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}.,DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2144806;,locus:2174794; AT5G09760,AT5G64640 pectinesterase Pectinesterase (EC 3.1.1.11) (Fragment),Pectinesterase (EC 3.1.1.11) Q0JD10,Q8LJK2 Q0JD10_ORYSJ,Q8LJK2_ORYSJ Os04g0438400 Os04g0438400 OSNPB_040438400,Os01g0880300 Os01g0880300 OsJ_04293 OSNPB_010880300 P0018C10.47 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. ENOG411DTQ9 Q8VYR5 PP351_ARATH Pentatricopeptide repeat-containing protein At4g35850, mitochondrial 50457 Pentatricopeptide repeat-containing protein At4g35850, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2125379; AT4G35850 pentatricopeptide repeat-containing protein At4g35850 Os05g0145600 protein (Unknow protein) (Unkonw protein) (cDNA clone:001-123-E09, full insert sequence) Q6ASS1 Q6ASS1_ORYSJ Os05g0145600 Os05g0145600 OsJ_17098 OSJNBa0077J22.1 OSJNBb0015A05.7 OSNPB_050145600 ENOG411DTQ8 NAGK Q9SCL7 NAGK_ARATH Acetylglutamate kinase, chloroplastic (EC 2.7.2.8) (N-acetyl-L-glutamate 5-phosphotransferase) (NAG kinase) (AtNAGK) FUNCTION: Involved in the arginine biosynthetic pathway via the intermediate compound ornithine. {ECO:0000269|PubMed:16377628, ECO:0000269|PubMed:16545809}. PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 2/4. ARA:AT3G57560-MONOMER; 2.7.2.8; 2.7.2.8 36595 Acetylglutamate kinase, chloroplastic (EC 2.7.2.8) (N-acetyl-L-glutamate 5-phosphotransferase) (NAG kinase) (AtNAGK) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; acetylglutamate kinase activity [GO:0003991]; arginine binding [GO:0034618]; ATP binding [GO:0005524]; arginine biosynthetic process via ornithine [GO:0042450] locus:2103528; AT3G57560 acetylglutamate kinase N-acetyl glutamate kinase 2 (Os02g0657600 protein),OSJNBb0034G17.8 protein (Os04g0550500 protein) (cDNA clone:006-209-G07, full insert sequence) (cDNA clone:J013050I03, full insert sequence) (cDNA clone:J023043F24, full insert sequence) (cDNA clone:J023061L10, full insert sequence) Q5KSL5,Q7XU28 Q5KSL5_ORYSJ,Q7XU28_ORYSJ OsAGK2 Os02g0657600 OSNPB_020657600,Os04g0550500 Os04g0550500 OsJ_15693 OSJNBb0034G17.8 OSNPB_040550500 ENOG411E2Q5 TAF9 Q9SYH2 TAF9_ARATH Transcription initiation factor TFIID subunit 9 (TATA binding protein associated factor 21kDa subunit) (TBP-associated factor 9) (AtTAF9) FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. R-ATH-5689880;R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 20597 Transcription initiation factor TFIID subunit 9 (TATA binding protein associated factor 21kDa subunit) (TBP-associated factor 9) (AtTAF9) SAGA complex [GO:0000124]; transcription factor TFIID complex [GO:0005669]; protein heterodimerization activity [GO:0046982]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]; histone H3 acetylation [GO:0043966]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2014350; AT1G54140 transcription initiation factor TFIID subunit Os07g0612500 protein,Os03g0408500 protein (Transcription initiation factor IID, 31kD subunit family protein, expressed) Q8H5X9,Q10JT5 Q8H5X9_ORYSJ,Q10JT5_ORYSJ OJ1003_H02.123 Os07g0612500 OsJ_25103 OSNPB_070612500,Os03g0408500 LOC_Os03g29470 OSNPB_030408500 ENOG411DTQC EMB2654 Q8RWS8,A0A1P8AXX6,F4IL02 PP199_ARATH,A0A1P8AXX6_ARATH,F4IL02_ARATH Pentatricopeptide repeat-containing protein At2g41720 (Protein EMBRYO DEFECTIVE 2654),Tetratricopeptide repeat (TPR)-like superfamily protein Embryo defective; Globular-D. Meinke-2004 92414,91657,76434 Pentatricopeptide repeat-containing protein At2g41720 (Protein EMBRYO DEFECTIVE 2654),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; chloroplast mRNA processing [GO:0010239]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451]; RNA splicing [GO:0008380] locus:2054331; AT2G41720 Pentatricopeptide repeat-containing protein Os07g0213300 protein (cDNA clone:J013123O09, full insert sequence),Os07g0213300 protein (Fragment) Q0D7S9,A0A0P0X3U6 Q0D7S9_ORYSJ,A0A0P0X3U6_ORYSJ Os07g0213300 Os07g0213300 OSNPB_070213300,Os07g0213300 OSNPB_070213300 ENOG411DTQB RABA1A P28185 RAA1A_ARATH Ras-related protein RABA1a (AtRABA1a) (Ras-related protein Ara-2) (Ras-related protein Rab11E) (AtRab11E) DISRUPTION PHENOTYPE: Slight increase of primary root elongation and lateral root branching and hypersensitivity of root growth in response to exogenous auxin. {ECO:0000269|PubMed:19199049}. Sensitive to auxin and NPA (inhibitor of polar auxin transport)-H. Lee-2009 FUNCTION: Involved in auxin-mediated response. May be involved in vesicle trafficking of components involved in polar auxin transport. Binds GTP and GDP and possesses intrinsic GTPase activity. {ECO:0000269|PubMed:19199049, ECO:0000269|PubMed:8013629}. MISCELLANEOUS: Plants overexpressing RABA1A show reduced growth of roots and shoots and smaller leaf sizes. {ECO:0000305|PubMed:19199049}. R-ATH-5620916;R-ATH-8873719; 23927 Ras-related protein RABA1a (AtRABA1a) (Ras-related protein Ara-2) (Ras-related protein Rab11E) (AtRab11E) endosome [GO:0005768]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031]; response to auxin [GO:0009733] locus:2202280; AT1G06400 RAB NA NA NA NA NA NA NA ENOG411DTQA SCPL26,SCPL27 Q9ZQQ0,Q9SFB5 SCP26_ARATH,SCP27_ARATH Serine carboxypeptidase-like 26 (EC 3.4.16.-),Serine carboxypeptidase-like 27 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 51521,52141 Serine carboxypeptidase-like 26 (EC 3.4.16.-),Serine carboxypeptidase-like 27 (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}. locus:2039275;,locus:2077422; AT2G35780,AT3G07990 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-) Q5QLC0 Q5QLC0_ORYSJ Os01g0833500 Os01g0833500 OsJ_03974 OSNPB_010833500 P0460C04.22 ENOG411DTQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os06g0692500 protein (Putative phytosulfokine receptor),Os06g0692300 protein (Putative systemin receptor SR160),Os06g0692600 protein (Putative brassinosteroid receptor),Os06g0692100 protein (Fragment) Q5Z666,Q5Z669,Q5Z665,A0A0P0X077 Q5Z666_ORYSJ,Q5Z669_ORYSJ,Q5Z665_ORYSJ,A0A0P0X077_ORYSJ P0532H03.30 Os06g0692500 OSNPB_060692500,Os06g0692300 OsJ_22458 OSNPB_060692300 P0532H03.26,Os06g0692600 Os06g0692600 OsJ_22460 OSNPB_060692600 P0532H03.32 P0550B04.2,Os06g0692100 OSNPB_060692100 ENOG411DTQF CAT7,CAT6 Q9SQZ0,Q9LZ20,A0A1P8B9T8,A0A1P8B9U0,A0A1I9LM42 CAAT7_ARATH,CAAT6_ARATH,A0A1P8B9T8_ARATH,A0A1P8B9U0_ARATH,A0A1I9LM42_ARATH Cationic amino acid transporter 7, chloroplastic,Cationic amino acid transporter 6, chloroplastic,Cationic amino acid transporter 6,Cationic amino acid transporter 7 mutants did not grow on medium containing 2.5 mM or 5 mM of L-glutamine as the sole nitrogen source. Purple leaves; No growth with L-glutamine as sole nitrogen source-D. Schachtman-2006 FUNCTION: Permease involved in the transport of the cationic amino acids. {ECO:0000250}.,FUNCTION: Permease involved in the transport of the cationic neutral or acidic amino acids. {ECO:0000269|PubMed:15377779}. R-ATH-352230; 63702,62809,44021,47255,47863 Cationic amino acid transporter 7, chloroplastic,Cationic amino acid transporter 6, chloroplastic,Cationic amino acid transporter 6,Cationic amino acid transporter 7 chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, and leaves. {ECO:0000269|PubMed:15377779}. locus:2075745;,locus:2175488; AT3G10600,AT5G04770 Cationic amino acid transporter Os04g0543600 protein (Fragment),Os12g0156866 protein,Os11g0155500 protein Q0JBB8,A0A0P0Y735,A0A0P0XZ15 Q0JBB8_ORYSJ,A0A0P0Y735_ORYSJ,A0A0P0XZ15_ORYSJ Os04g0543600 Os04g0543600 OSNPB_040543600,Os12g0156866 OSNPB_120156866,Os11g0155500 OSNPB_110155500 ENOG411DTQE CDP1 Q8VY16 CDP1_ARATH Plastid division protein CDP1, chloroplastic (ARC6-homolog protein) (Protein CHLOROPLAST DIVISION SITE POSITIONING 1) (AtCDP1) (Protein PARALOG OF ARC6) DISRUPTION PHENOTYPE: Defects of chloroplast and FtsZ filament morphology (e.g. long FtsZ filaments formed by multiple rings or spirals); elongated chloroplasts with multiple division sites. {ECO:0000269|PubMed:19453460, ECO:0000269|PubMed:19564892}. Abnormalities in size and shape of chloroplasts in mesophyll cells compared to wild type. Chloroplast division is aberrant. Few chloroplasts with abnormal morphology-Y. He-2009 FUNCTION: Component of the plastid division machinery required for PDV1 localization to constriction sites. Involved in chloroplast division site placement. Seems to inhibit FtsZ assembly, functioning as an antagonistic regulator of FtsZ dynamics against ARC6. {ECO:0000269|PubMed:19453460, ECO:0000269|PubMed:19564892}. 90823 Plastid division protein CDP1, chloroplastic (ARC6-homolog protein) (Protein CHLOROPLAST DIVISION SITE POSITIONING 1) (AtCDP1) (Protein PARALOG OF ARC6) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid inner membrane [GO:0009528]; protein self-association [GO:0043621]; chloroplast fission [GO:0010020]; plastid fission [GO:0043572] TISSUE SPECIFICITY: Exclusively expressed in young green tissues such as young cotyledons, shoot apex, emerging leaves and budding inflorescence. {ECO:0000269|PubMed:19564892}. locus:2094143; AT3G19180 plastid division protein CDP1 chloroplastic-like Os04g0675800 protein A0A0P0WG98 A0A0P0WG98_ORYSJ Os04g0675800 OSNPB_040675800 ENOG411DTQD PMR6 Q93Z04,Q9SCP2,F4JW80,A0A1P8BF75 PLY13_ARATH,PLY12_ARATH,F4JW80_ARATH,A0A1P8BF75_ARATH Probable pectate lyase 13 (EC 4.2.2.2) (Powdery mildew susceptibility protein) (Powdery mildew-resistant mutant 6),Probable pectate lyase 12 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) Resistant to powdery mildew-S. Somerville-2002 FUNCTION: Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition. {ECO:0000269|PubMed:12215508}. MISCELLANEOUS: Pmr6 mutations are pleiotropic, indicating that PMR6 plays a unique role in normal plant growth and development. The increased resistance in mutants is not mediated by the constitutive activation of the SA-dependent or the JA/ethylene-dependent defense pathway. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. ARA:AT3G54920-MONOMER;,ARA:AT3G53190-MONOMER; 4.2.2.2 53929,53593,56041,52355 Probable pectate lyase 13 (EC 4.2.2.2) (Powdery mildew susceptibility protein) (Powdery mildew-resistant mutant 6),Probable pectate lyase 12 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; cell wall modification involved in multidimensional cell growth [GO:0042547]; defense response, incompatible interaction [GO:0009814]; pectin catabolic process [GO:0045490],anchored component of membrane [GO:0031225]; metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490],anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490],metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed equally in mature leaves, buds, flowers, rosettes and roots. {ECO:0000269|PubMed:12215508}. locus:2082667;,locus:2101998;,locus:2179949; AT3G54920,AT3G53190,AT5G04310 Pectate lyase Pectate lyase (EC 4.2.2.2) A0A0P0XVJ6 A0A0P0XVJ6_ORYSJ Os10g0457200 OSNPB_100457200 ENOG411DTQK KAS Q8L3X9 KASM_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS) DISRUPTION PHENOTYPE: Slow growth and bleached leaf phenotype when grown under ambient air, but normal growth under CO(2)-enriched air. Highly prevents lipoylation of the H-protein subunit of the glycine decarboxylase (GDC) in leaves, but has only a limited effect on the lipoylation of the E2 subunits of pyruvate dehydrogenase (PDH) and alpha-ketoacid dehydrogenase (KGDH) complexes in leaves and even no effect in roots. {ECO:0000269|PubMed:17616510}. FUNCTION: Catalyzes all the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Able to elongate saturated acyl chains from 4 to at least 16 carbons. Uses malonyl-CoA but not acetyl-CoA as primer substrate. When expressed in a heterologous system, reveals a bimodal distribution of products, with peaks at C8 and C14-C16. The major product of the reaction (octanoyl-ACP) is required for the lipoylation of essential mitochondrial proteins. {ECO:0000269|PubMed:17616510}. MISCELLANEOUS: Mitochondrial protein lipoylation in leaves does not exclusively depend on the lipoate biosynthesis by KAS and may occur independently of this pathway in roots. {ECO:0000305|PubMed:17616510}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT2G04540-MONOMER;MetaCyc:AT2G04540-MONOMER; 2.3.1.41; 2.3.1.41 49379 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS) mitochondrion [GO:0005739]; 3-oxoacyl-[acyl-carrier-protein] synthase activity [GO:0004315]; fatty acid biosynthetic process [GO:0006633]; thylakoid membrane organization [GO:0010027] TISSUE SPECIFICITY: Expressed at the same level in leaves, roots and flowers. {ECO:0000269|PubMed:14660674}. locus:2058359; AT2G04540 3-oxoacyl- acyl-carrier-protein synthase Os02g0196900 protein (Fragment) Q0E328 Q0E328_ORYSJ Os02g0196900 Os02g0196900 OSNPB_020196900 ENOG411DTQI A0A1P8AP77,A0A1P8AP94,F4I240,A0A1P8AP74 A0A1P8AP77_ARATH,A0A1P8AP94_ARATH,F4I240_ARATH,A0A1P8AP74_ARATH Transcription factor jumonji (JmjC) domain-containing protein 113498,166592,137055,166464 Transcription factor jumonji (JmjC) domain-containing protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [GO:0016706],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [GO:0016706],nucleus [GO:0005634]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [GO:0016706]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2031290; AT1G63490 JmjC domain hydroxylase NA NA NA NA NA NA NA ENOG411DTQH ND5 P29388 NU5M_ARATH NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH dehydrogenase subunit 5) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. MISCELLANEOUS: Exons a and b (AtMg00513) and d and e (AtMg00060) are cis-spliced, while trans-splicing reactions are required to link exons b and c (AtMg00665) and c and d. ARA:ATMG00513-MONOMER;MetaCyc:ATMG00513-MONOMER; 1.6.5.3 74316 NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH dehydrogenase subunit 5) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773] ATMG00060ATMG00513;ATMG00665; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) Q8HCR3 Q8HCR3_ORYSJ nad5 FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000256|SAAS:SAAS00061107}. ENOG411DTQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Chitinase 1, putative, expressed (Os10g0416800 protein) (cDNA clone:001-007-F06, full insert sequence) (cDNA clone:001-208-E12, full insert sequence) (cDNA clone:006-303-H08, full insert sequence) (cDNA clone:006-306-E05, full insert sequence) (cDNA clone:J023025I19, full insert sequence) Q7XEL9 Q7XEL9_ORYSJ Os10g0416800 LOC_Os10g28120 Os10g0416800 OsJ_31527 OSNPB_100416800 ENOG411DTQM ASG7 Q9FGJ9,Q93ZA8,A0A1P8B5A4,F4JNG1 Q9FGJ9_ARATH,Q93ZA8_ARATH,A0A1P8B5A4_ARATH,F4JNG1_ARATH AT5g47580/MNJ7_17 (Transmembrane protein),At4g17250/dl4660w (Transmembrane protein),Transmembrane protein 84604,83942,73118,72840 AT5g47580/MNJ7_17 (Transmembrane protein),At4g17250/dl4660w (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021]; mitochondrion [GO:0005739],integral component of membrane [GO:0016021]; heat acclimation [GO:0010286],integral component of membrane [GO:0016021] locus:2169018;,locus:2130754; AT5G47580,AT4G17250 NA NA NA NA NA NA NA NA ENOG411DTQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting protein kinase CBL-interacting protein kinase 15 (EC 2.7.11.1) (OsCIPK15),CBL-interacting protein kinase 14 (EC 2.7.11.1) (OsCIPK14) Q2RBF0,Q2QYM3 CIPKF_ORYSJ,CIPKE_ORYSJ CIPK15 Os11g0113700 LOC_Os11g02240,CIPK14 Os12g0113500 LOC_Os12g02200 OsJ_031406 FUNCTION: Involved in salt stress tolerance. CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. {ECO:0000269|PubMed:17535819}.,FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DTQR PEX16 Q8S8S1 PEX16_ARATH Peroxisome biogenesis protein 16 (Peroxin-16) (AtPEX16) (AtPex16p) (Protein SHRUNKEN SEED 1) DISRUPTION PHENOTYPE: Not viable shrunken seeds. Starch accumulation in mature embryos, cotyledon and hypocotyl cells. Developmental delay during early embryo morphogenesis. {ECO:0000269|PubMed:10195899}. Altered seed storage composition reduced oil and protein body contents with concurrent accumulation of starch; developing embryos have white colored appearance; cotyledons and hypocotyl cells contain no recognizable protein bodies and few oil bodies; starch granules membrane stacks vesicles and vacuoles are present in cells (all of which are absent in wt cells); oil bodies contain higher electron density substances than wt; mature seeds shrink upon desiccation (as a consequence of insufficient deposition of storage molecules) and are lethal; kanamycin resistant. Embryo defective; Cotyledon-H. Goodman-1999 FUNCTION: Involved in the formation of peroxisomes, lipid bodies and protein bodies. {ECO:0000269|PubMed:10195899, ECO:0000269|PubMed:15173561, ECO:0000269|PubMed:16896794, ECO:0000269|PubMed:17431024, ECO:0000269|PubMed:17478547}. MISCELLANEOUS: Travels from the cytosol to peroxisomes via the reticular and perinuclear endoplasmic reticulum (ER) and an ER-peroxisome intermediate compartment (ERPIC). 41611 Peroxisome biogenesis protein 16 (Peroxin-16) (AtPEX16) (AtPex16p) (Protein SHRUNKEN SEED 1) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; fatty acid biosynthetic process [GO:0006633]; peroxisome organization [GO:0007031] DEVELOPMENTAL STAGE: Up-regulated during seed maturation. {ECO:0000269|PubMed:10195899}. TISSUE SPECIFICITY: Expressed in roots, siliques, seeds, cotyledons, leaves and flowers. Low expression in leaves and roots. {ECO:0000269|PubMed:10195899, ECO:0000269|PubMed:15173561, ECO:0000269|PubMed:16040658}. locus:2043674; AT2G45690 peroxisome biogenesis protein 16-like Peroxisomal membrane protein PEX16 (Fragment) A0A0P0VE35 A0A0P0VE35_ORYSJ Os02g0123200 OSNPB_020123200 ENOG411DTQQ PER43 Q9SZH2,A0A1P8B7K6 PER43_ARATH,A0A1P8B7K6_ARATH Peroxidase 43 (Atperox P43) (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.,FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G25980-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35365,31454 Peroxidase 43 (Atperox P43) (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] AT4G25980 peroxidase Peroxidase (EC 1.11.1.7) Q5U1G1,Q5U1F6 Q5U1G1_ORYSJ,Q5U1F6_ORYSJ prx132 Os11g0210100 OSNPB_110210100,prx137 LOC_Os12g08920 Os12g0191500 OsJ_35481 OSNPB_120191500 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DTQP NPC1 Q8L7Y9 NPC1_ARATH Non-specific phospholipase C1 (EC 3.1.-.-) ARA:AT1G07230-MONOMER; Glycerophospholipid metabolism (00564),Ether lipid metabolism (00565),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.-.- 60048 Non-specific phospholipase C1 (EC 3.1.-.-) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; phospholipid catabolic process [GO:0009395] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:20507939}. locus:2007357; AT1G07230 phospholipase C Os03g0826600 protein (Phosphoesterase family protein, putative, expressed) (Putative phospholipase) (cDNA clone:J033030C17, full insert sequence),Os03g0826600 protein (Fragment),Os04g0234402 protein (Fragment) Q94GF2,A0A0N7KIB6,A0A0N7KIQ0 Q94GF2_ORYSJ,A0A0N7KIB6_ORYSJ,A0A0N7KIQ0_ORYSJ OJ1111_B11.8 Os03g0826600 LOC_Os03g61130 OsJ_13198 OSJNBa0010E04.10 OSNPB_030826600,Os03g0826600 OSNPB_030826600,Os04g0234402 OSNPB_040234402 ENOG411DTQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain Beta-D-xylosidase (Glycosyl hydrolase family 3 C terminal domain containing protein, expressed) (Os11g0297800 protein) (cDNA clone:002-149-D05, full insert sequence),Os11g0297300 protein Q53MQ1,Q0IT77 Q53MQ1_ORYSJ,Q0IT77_ORYSJ LOC_Os11g19210 Os11g0297800 OSNPB_110297800,Os11g0297300 OSNPB_110297300 ENOG411DTQV T16L24.260 Q9M198,A0A1I9LQ56,A0A1I9LQ55 Q9M198_ARATH,A0A1I9LQ56_ARATH,A0A1I9LQ55_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein T16L24.260),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT3G59710-MONOMER; R-ATH-211945;R-ATH-2162123; Chemical carcinogenesis (05204),Metabolic pathways (01100),Metabolism of xenobiotics by cytochrome P450 (00980),Arachidonic acid metabolism (00590) 33255,32053,35851 NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein T16L24.260),NAD(P)-binding Rossmann-fold superfamily protein locus:2097508; AT3G59710 ( )-neomenthol dehydrogenase-like Os04g0496000 protein (Fragment),Os02g0607700 protein (Putative carbonyl reductase 3) (cDNA clone:002-185-B01, full insert sequence),Os04g0496150 protein Q0JC25,Q6K1Y8,A0A0P0WC51 Q0JC25_ORYSJ,Q6K1Y8_ORYSJ,A0A0P0WC51_ORYSJ Os04g0496000 Os04g0496000 OSNPB_040496000,Os02g0607700 OSJNBa0030C08.23 OSNPB_020607700,Os04g0496150 OSNPB_040496150 ENOG411DTQU A0A1P8B7Z1,A0A1P8B7X2,A0A1P8B7W7,A0A1P8B7X3,A0A1P8B7X5,A0A1P8B7Y7,A0A1P8B7X0,F4JKK8,F4JKL0,F4JKK9 A0A1P8B7Z1_ARATH,A0A1P8B7X2_ARATH,A0A1P8B7W7_ARATH,A0A1P8B7X3_ARATH,A0A1P8B7X5_ARATH,A0A1P8B7Y7_ARATH,A0A1P8B7X0_ARATH,F4JKK8_ARATH,F4JKL0_ARATH,F4JKK9_ARATH D111/G-patch domain-containing protein 44116,40610,43930,50087,40738,39248,43988,59667,59539 D111/G-patch domain-containing protein nucleic acid binding [GO:0003676] locus:2124306; AT4G34140 G-patch domain Os01g0170100 protein (Fragment) A0A0P0UZ37 A0A0P0UZ37_ORYSJ Os01g0170100 OSNPB_010170100 ENOG411DTQT RER5,RER6,BPG3 Q9SIY5,Q8RWG3,A0A1P8B2W9,A0A1I9LNA2 RER5_ARATH,RER6_ARATH,A0A1P8B2W9_ARATH,A0A1I9LNA2_ARATH Protein RETICULATA-RELATED 5, chloroplastic,Protein RETICULATA-RELATED 6, chloroplastic,DUF399 family protein, putative (DUF399 and DUF3411) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23596191}. FUNCTION: May play a role in leaf development. {ECO:0000305|PubMed:23596191}. 80701,82252,71486,58044 Protein RETICULATA-RELATED 5, chloroplastic,Protein RETICULATA-RELATED 6, chloroplastic,DUF399 family protein, putative (DUF399 and DUF3411) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; chlorophyll biosynthetic process [GO:0015995]; multicellular organism development [GO:0007275]; response to brassinosteroid [GO:0009741],chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; multicellular organism development [GO:0007275] locus:2063136;,locus:2078446; AT2G40400,AT3G56140 Protein of unknown function DUF399 Os01g0826900 protein (Fragment),Os05g0474600 protein (Fragment) A0A0P0V9W5,A0A0P0WNP3 A0A0P0V9W5_ORYSJ,A0A0P0WNP3_ORYSJ Os01g0826900 OSNPB_010826900,Os05g0474600 OSNPB_050474600 ENOG411DTQZ O49336 O49336_ARATH Expressed protein (Uncharacterized protein At2g30710) (Uncharacterized protein At2g30710; T11J7.10) (Ypt/Rab-GAP domain of gyp1p superfamily protein) 51506 Expressed protein (Uncharacterized protein At2g30710) (Uncharacterized protein At2g30710; T11J7.10) (Ypt/Rab-GAP domain of gyp1p superfamily protein) endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2054477; AT2G30710 TBC Os09g0515800 protein (Putative tbc1 domain family protein) (cDNA clone:J013050J18, full insert sequence) Q69IL7 Q69IL7_ORYSJ Os09g0515800 OsJ_30011 OSJNBb0034B12.5 OSNPB_090515800 P0450E05.30 ENOG411DTQY ABCC8 Q8LGU1,A0A1I9LPV3,A0A1I9LPV5,A0A1I9LPV6 AB8C_ARATH,A0A1I9LPV3_ARATH,A0A1I9LPV5_ARATH,A0A1I9LPV6_ARATH ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 6) (Glutathione S-conjugate-transporting ATPase 6) (Multidrug resistance-associated protein 6),Multidrug resistance-associated protein 6 FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}. 3.6.3.44 162072,116115,162841,161567 ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 6) (Glutathione S-conjugate-transporting ATPase 6) (Multidrug resistance-associated protein 6),Multidrug resistance-associated protein 6 integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}. locus:2094721; AT3G21250 ABC transporter C family member Os05g0196100 protein (Fragment),Os05g0196100 protein,Os06g0561800 protein A0A0N7KKA5,A0A0P0WJ59,A0A0P0WXR0 A0A0N7KKA5_ORYSJ,A0A0P0WJ59_ORYSJ,A0A0P0WXR0_ORYSJ Os05g0196100 OSNPB_050196100,Os06g0561800 OSNPB_060561800 ENOG411E2Q9 GATA2 O49741 GATA2_ARATH GATA transcription factor 2 (AtGATA-2) FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. 28864 GATA transcription factor 2 (AtGATA-2) nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}. locus:2055589; AT2G45050 GATA transcription factor Os10g0557600 protein (Fragment) A0A0P0XXK4 A0A0P0XXK4_ORYSJ Os10g0557600 OSNPB_100557600 ENOG411E4HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: flp1 flp1 (fpf1-like protein 1) Flowering-promoting factor 1-like protein 1 (FPF1-like protein 1) (Protein ROOT ARCHITECTURE ASSOCIATED 1) (OsRAA1) Q9LGE3 FLP1_ORYSJ RAA1 Os01g0257300 LOC_Os01g15340 OsJ_01159 P0462H08.5 DISRUPTION PHENOTYPE: RNAi mutants display reduced seedling height phenotype, because of abnormal cell division. {ECO:0000269|PubMed:18701670}. FUNCTION: GTP-binding protein that functions in the development of root systems, which are mediated by auxin. Acts as a cell cycle regulator during root development. Proteasome-mediated degradation of the protein is necessary for the transition of metaphase to anaphase in mitosis. {ECO:0000269|PubMed:15247372, ECO:0000269|PubMed:16173467, ECO:0000269|PubMed:18701670, ECO:0000269|PubMed:20037474}. MISCELLANEOUS: Overexpression results in reduced growth of the primary root, an increased number of adventitious roots, a helix primary root and a delayed gravitropic response of roots in seedlings. ENOG411E4HY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411E4HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os01g0108400 protein A0A0P0UXA8 A0A0P0UXA8_ORYSJ Os01g0108400 OSNPB_010108400 ENOG411E4HS Q9FMN4 TCLOT_ARATH Thioredoxin-like protein Clot (Thioredoxin Clot) (AtClot) FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 15206 Thioredoxin-like protein Clot (Thioredoxin Clot) (AtClot) cytosol [GO:0005829]; protein-disulfide reductase activity [GO:0047134]; cell redox homeostasis [GO:0045454] locus:2160021; AT5G42850 Thioredoxin-like protein Thioredoxin-like protein Clot (Thioredoxin Clot) (OsClot) Q5Z9Z3 OCLOT_ORYSJ Os06g0320000 LOC_Os06g21550 OsJ_21152 P0592B08.32 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411E4HR ASG8 Q8RYE6 Q8RYE6_ARATH Expressed protein 21270 Expressed protein locus:505006311; AT2G40475 NA Os05g0335500 protein Q0DJ26 Q0DJ26_ORYSJ Os05g0335500 Os05g0335500 OSNPB_050335500 ENOG411E4HQ O81500 O81500_ARATH At5g26330 (Copper binding protein-like, predicted GPI-anchored protein) (Cupredoxin superfamily protein) (F9D12.16 protein) 19688 At5g26330 (Copper binding protein-like, predicted GPI-anchored protein) (Cupredoxin superfamily protein) (F9D12.16 protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2151069; AT5G26330 Plastocyanin-like domain Os03g0807500 protein C7J028 C7J028_ORYSJ Os03g0807500 OSNPB_030807500 ENOG411E4HP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain BHLH protein family-like (Os08g0477900 protein) Q6ZJC8 Q6ZJC8_ORYSJ Os08g0477900 OJ1666_A04.16 OSNPB_080477900 ENOG411E4HW Q9SKZ6,Q9SKZ7 Q9SKZ6_ARATH,Q9SKZ7_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (At2g32030) (Putative alanine acetyl transferase),Acyl-CoA N-acyltransferases (NAT) superfamily protein (At2g32020) (Putative alanine acetyl transferase) 21162,20997 Acyl-CoA N-acyltransferases (NAT) superfamily protein (At2g32030) (Putative alanine acetyl transferase),Acyl-CoA N-acyltransferases (NAT) superfamily protein (At2g32020) (Putative alanine acetyl transferase) N-acetyltransferase activity [GO:0008080],N-acetyltransferase activity [GO:0008080]; response to abscisic acid [GO:0009737] locus:2045477;,locus:2045487; AT2G32030,AT2G32020 Acetyltransferase (GNAT) family Os03g0794300 protein,Os03g0794200 protein (Fragment),Os01g0358800 protein (Fragment),Os03g0794400 protein (Fragment) A0A0P0W438,A0A0N7KI73,A0A0P0V2J5,A0A0P0W473 A0A0P0W438_ORYSJ,A0A0N7KI73_ORYSJ,A0A0P0V2J5_ORYSJ,A0A0P0W473_ORYSJ Os03g0794300 OSNPB_030794300,Os03g0794200 OSNPB_030794200,Os01g0358800 OSNPB_010358800,Os03g0794400 OSNPB_030794400 ENOG411E4HV ATL41 Q9SLC3 ATL41_ARATH E3 ubiquitin-protein ligase ATL41 (EC 2.3.2.27) (RING-H2 finger protein ATL41) (RING-type E3 ubiquitin transferase ATL41) FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28, UBC29, UBC30, UBC35 and UBC36 in vitro. {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 26443 E3 ubiquitin-protein ligase ATL41 (EC 2.3.2.27) (RING-H2 finger protein ATL41) (RING-type E3 ubiquitin transferase ATL41) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567] locus:2053791; AT2G42360 E3 ubiquitin-protein ligase ATL41-like NA NA NA NA NA NA NA ENOG411E4HU EMB514 Q8L557 EM514_ARATH Protein EMBRYO DEFECTIVE 514 (Protein DOMINO 1) DISRUPTION PHENOTYPE: Embryonic lethality due to embryo development arrest at globular stage. {ECO:0000269|PubMed:15341625}. Embryo-defective. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and as a consequence reach only the globular stage at desiccation. Larger size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. The ultrastructure of mutant nucleoli is drastically different from wild type. Embryo defective; Globular-M. Devic-2004 FUNCTION: May play a role in ribosome biogenesis and in determining the rate of cell division. Involved in a process essential for nuclear and nucleolar functions. {ECO:0000269|PubMed:15341625}. 22545 Protein EMBRYO DEFECTIVE 514 (Protein DOMINO 1) nucleus [GO:0005634]; embryo development ending in seed dormancy [GO:0009793]; nucleologenesis [GO:0017126]; regulation of cell division [GO:0051302] TISSUE SPECIFICITY: Expressed in leaves, flowers and embryos at globular stage. {ECO:0000269|PubMed:15341625}. locus:2154089; AT5G62440 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division Expressed protein (Os03g0187000 protein) (cDNA clone:006-205-G11, full insert sequence) Q10QR1 Q10QR1_ORYSJ LOC_Os03g08810 Os03g0187000 OsJ_09703 OSNPB_030187000 ENOG411E4HT Q9FY56,Q93WB2 Q9FY56_ARATH,Q93WB2_ARATH At5g11090 (Serine-rich protein) (Serine-rich protein-like protein) (Uncharacterized protein At5g11090) (Uncharacterized protein T5K6_80),AT5g25280/F18G18_20 (Serine-rich protein-like protein) 23756,24109 At5g11090 (Serine-rich protein) (Serine-rich protein-like protein) (Uncharacterized protein At5g11090) (Uncharacterized protein T5K6_80),AT5g25280/F18G18_20 (Serine-rich protein-like protein) locus:2184926;,locus:2145437; AT5G11090,AT5G25280 Inherit from NOG: Serine-rich NA NA NA NA NA NA NA ENOG411E4HK Q9SGX2,Q9SAC3 Q9SGX2_ARATH,Q9SAC3_ARATH F20B24.22 (Voltage-gated hydrogen channel-like protein),T16B5.6 (Voltage-gated hydrogen channel-like protein) 26962,13182 F20B24.22 (Voltage-gated hydrogen channel-like protein),T16B5.6 (Voltage-gated hydrogen channel-like protein) integral component of membrane [GO:0016021] locus:2019998; AT1G10800 NA NA NA NA NA NA NA NA ENOG411E4HC PSRP5 Q9LER7 PSRP5_ARATH 50S ribosomal protein 5, chloroplastic (Plastid-specific 50S ribosomal protein 5) (PSRP-5) 16361 50S ribosomal protein 5, chloroplastic (Plastid-specific 50S ribosomal protein 5) (PSRP-5) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; ribosome [GO:0005840]; thylakoid [GO:0009579]; chloroplast ribulose bisphosphate carboxylase complex biogenesis [GO:0080158]; plastid translation [GO:0032544] locus:2103635; AT3G56910 plastid-specific 50S ribosomal protein 5 Os01g0278900 protein (Ribosomal protein, chloroplast-like) (cDNA clone:J013095M10, full insert sequence) Q5NBK8 Q5NBK8_ORYSJ Os01g0278900 OsJ_01303 OSNPB_010278900 P0025D05.28 ENOG411E4HB SDH6 Q941A6 SDH6_ARATH Succinate dehydrogenase subunit 6, mitochondrial PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle. {ECO:0000305}. ARA:AT1G08480-MONOMER;MetaCyc:AT1G08480-MONOMER; 15813 Succinate dehydrogenase subunit 6, mitochondrial mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; plastid [GO:0009536]; respiratory chain complex II [GO:0045273]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; tricarboxylic acid cycle [GO:0006099] locus:2201851; AT1G08480 Rickettsia 17 kDa surface antigen family protein Succinate dehydrogenase subunit 6, mitochondrial Q6ZCC4 SDH6_ORYSJ SDH6 Os08g0112800 LOC_Os08g02080 OsJ_25800 P0498H04.25 ENOG411E4HA LBD33 Q9LHS8 LBD33_ARATH LOB domain-containing protein 33 (ASYMMETRIC LEAVES 2-like protein 24) (AS2-like protein 24) 20243 LOB domain-containing protein 33 (ASYMMETRIC LEAVES 2-like protein 24) (AS2-like protein 24) TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. locus:2152820; AT5G06080 lob domain-containing protein NA NA NA NA NA NA NA ENOG411E4HE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os09g0540800 protein A0A0P0XR34 A0A0P0XR34_ORYSJ Os09g0540800 OSNPB_090540800 ENOG411E4HD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1517) Os08g0119300 protein,Os08g0119100 protein A0A0P0XB20,A0A0P0XB47 A0A0P0XB20_ORYSJ,A0A0P0XB47_ORYSJ Os08g0119300 OSNPB_080119300,Os08g0119100 OSNPB_080119100 ENOG411E4H8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4H3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os12g0508200 protein) (cDNA clone:J013023H09, full insert sequence) (cDNA clone:J023017L09, full insert sequence) Q2QQ37 Q2QQ37_ORYSJ LOC_Os12g32360 Os12g0508200 OsJ_36237 OSNPB_120508200 ENOG411E4H2 HMGB5,HMGB4 O49597,Q42344 HMGB5_ARATH,HMGB4_ARATH High mobility group B protein 5 (High mobility group protein D) (AtHMGdelta) (HMG delta) (Nucleosome/chromatin assembly factor group D 05) (Nucleosome/chromatin assembly factor group D 5),High mobility group B protein 4 (High mobility group protein G) (AtHMGgamma) (HMG gamma) (Nucleosome/chromatin assembly factor group D 04) (Nucleosome/chromatin assembly factor group D 4) FUNCTION: Binds preferentially double-stranded DNA. Confers resistance to salt and drought stresses. {ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:9461286}.,FUNCTION: Binds preferentially double-stranded DNA. {ECO:0000269|PubMed:9461286}. 14203,15420 High mobility group B protein 5 (High mobility group protein D) (AtHMGdelta) (HMG delta) (Nucleosome/chromatin assembly factor group D 05) (Nucleosome/chromatin assembly factor group D 5),High mobility group B protein 4 (High mobility group protein G) (AtHMGgamma) (HMG gamma) (Nucleosome/chromatin assembly factor group D 04) (Nucleosome/chromatin assembly factor group D 4) chromatin [GO:0000785]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; structural constituent of chromatin [GO:0030527]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin assembly or disassembly [GO:0006333],chromatin [GO:0000785]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; structural constituent of chromatin [GO:0030527]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin assembly or disassembly [GO:0006333] TISSUE SPECIFICITY: Mostly expressed lateral roots, root tips and flowers (including pedicels, but excluding ovary), and, to a lower extent, in cotyledons, hypocotyls, stems and leaves. {ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:17316617, ECO:0000269|PubMed:9461286}.,TISSUE SPECIFICITY: Mostly expressed roots and flowers, and, to a lower extent, in stems and leaves. {ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:9461286}. locus:2128003;,locus:2053893; AT4G35570,AT2G17560 high mobility group HMG type nucleosome/chromatin assembly factor (Os09g0551600 protein) (Putative HMGd1) (cDNA clone:J013071N11, full insert sequence) Q69MM2 Q69MM2_ORYSJ Os09g0551600 OSNPB_090551600 P0489D11.30 ENOG411E4H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Yippee Protein yippee-like Q7F263 Q7F263_ORYSJ OJ1127_E01.118 Os07g0584000 OsJ_24903 OSNPB_070584000 ENOG411E4H0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0337200 protein (cDNA clone:001-112-C09, full insert sequence) Q5WMQ1 Q5WMQ1_ORYSJ Os05g0337200 Os05g0337200 OsJ_18111 OSJNBa0053E01.1 OSNPB_050337200 ENOG411EMFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S16 NA NA NA NA NA NA NA ENOG411EMFC HIPP41 F4I1X0,A0A1P8ANN9,A0A1P8AT75,F4I1X2 HIP41_ARATH,A0A1P8ANN9_ARATH,A0A1P8AT75_ARATH,F4I1X2_ARATH Heavy metal-associated isoprenylated plant protein 41 (AtHIP41),Ferredoxin-fold anticodon-binding domain protein,Heavy metal-associated domain protein,Uncharacterized protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 59038,14729,16038,28486 Heavy metal-associated isoprenylated plant protein 41 (AtHIP41),Ferredoxin-fold anticodon-binding domain protein,Heavy metal-associated domain protein,Uncharacterized protein cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; phenylalanine-tRNA ligase activity [GO:0004826]; phenylalanyl-tRNA aminoacylation [GO:0006432],cytoplasm [GO:0005737]; phenylalanine-tRNA ligase activity [GO:0004826]; phenylalanyl-tRNA aminoacylation [GO:0006432] locus:2012105;,locus:2012115; AT1G55790,AT1G55800 Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411EMFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411EMFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: methyltransferase like 6 NA NA NA NA NA NA NA ENOG411EMFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EMFW PLIM2C Q500W4 PLI2C_ARATH LIM domain-containing protein PLIM2c (Pollen-expressed LIM protein 2C) FUNCTION: Binds to actin filaments and promotes cross-linking into thick bundles. Has an actin-stabilizing activity. Associates predominantly with long and dynamic actin bundles in the shank of growing pollen tubes. The actin regulatory activities are inhibited by pH > 6.8 and/or high [Ca(2+)]. {ECO:0000269|PubMed:20817848}. MISCELLANEOUS: Cross-links actin with a constant of dissociation of 1.5 uM. {ECO:0000269|PubMed:20817848}. 23765 LIM domain-containing protein PLIM2c (Pollen-expressed LIM protein 2C) cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin filament binding [GO:0051015]; metal ion binding [GO:0046872]; actin filament bundle assembly [GO:0051017] TISSUE SPECIFICITY: Exclusively expressed in pollen grains. {ECO:0000269|PubMed:20817848}. locus:2098871; AT3G61230 LIM domain-containing protein Os02g0641000 protein A0A0P0VM79 A0A0P0VM79_ORYSJ Os02g0641000 OSNPB_020641000 ENOG411ED53 T10O8_190 Q9M026 Q9M026_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T10O8_190) 48023 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T10O8_190) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872] locus:2179207; AT5G01480 C1 domain NA NA NA NA NA NA NA ENOG411ED57 F4J738,F4J737 SAD2H_ARATH,F4J737_ARATH Importin beta-like SAD2 homolog,ARM repeat superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:16889648}. FUNCTION: Functions probably in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with other importin subunits. {ECO:0000250|UniProtKB:F4IRR2}. R-ATH-5578749; 117769,117640 Importin beta-like SAD2 homolog,ARM repeat superfamily protein cytosol [GO:0005829]; nuclear envelope [GO:0005635]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; protein import into nucleus [GO:0006606]; signal transduction [GO:0007165],nucleus [GO:0005634]; Ran GTPase binding [GO:0008536]; intracellular protein transport [GO:0006886] locus:2077715; AT3G59020 AT3G59020 (E 0.0) binding protein transporter NA NA NA NA NA NA NA ENOG411EMF2 Q8L745 Q8L745_ARATH AT5g42220/K5J14_2 (Ubiquitin-like superfamily protein) 92554 AT5g42220/K5J14_2 (Ubiquitin-like superfamily protein) cytosol [GO:0005829] locus:2157602; AT5G42220 Ubiquitin-2 like Rad60 SUMO-like NA NA NA NA NA NA NA ENOG411EH9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os07g0632300 protein,Os01g0567900 protein,Os07g0632100 protein,Os01g0567800 protein Q7XI57,A2ZUI5,Q8LHN2,A0A0P0V484 Q7XI57_ORYSJ,A2ZUI5_ORYSJ,Q8LHN2_ORYSJ,A0A0P0V484_ORYSJ P0519E12.117 Os07g0632300 OSNPB_070632300,Os01g0567900 OsJ_02270 OSNPB_010567900,P0519E12.115 Os07g0632100 OSNPB_070632100,Os01g0567800 OSNPB_010567800 ENOG411EH9Z Q2V3J6,Q56XB0,Q9M9M3 DF202_ARATH,DF204_ARATH,DF205_ARATH Putative defensin-like protein 202,Defensin-like protein 204,Defensin-like protein 205 8786,9149,9974 Putative defensin-like protein 202,Defensin-like protein 204,Defensin-like protein 205 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023312;,locus:1009023262;,locus:2074414; AT4G11393,AT3G05727,AT3G05730 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) NA NA NA NA NA NA NA ENOG411EH9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1WG Q9C9I9,Q9T0F9,Q8GXQ9,A0A1P8ASY9,A0A1P8ASZ3,F4IA09 Q9C9I9_ARATH,Q9T0F9_ARATH,Q8GXQ9_ARATH,A0A1P8ASY9_ARATH,A0A1P8ASZ3_ARATH,F4IA09_ARATH Protein kinase superfamily protein (Uncharacterized protein F26A9.10),Protein kinase superfamily protein (Uncharacterized protein AT4g10010) (Uncharacterized protein T5L19.140),Protein kinase superfamily protein (Uncharacterized protein At4g10010/T5L19_140),Protein kinase superfamily protein R-ATH-674695;R-ATH-6796648; 72443,72217,52909,39523,47867,51130 Protein kinase superfamily protein (Uncharacterized protein F26A9.10),Protein kinase superfamily protein (Uncharacterized protein AT4g10010) (Uncharacterized protein T5L19.140),Protein kinase superfamily protein (Uncharacterized protein At4g10010/T5L19_140),Protein kinase superfamily protein nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2825344;,locus:2140543; AT1G71530,AT4G10010 S_TKc NA NA NA NA NA NA NA ENOG411E1WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAE1/Type III polyketide synthase-like protein NA NA NA NA NA NA NA ENOG411E1WD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3133) Os01g0621300 protein A0A0P0V5C3 A0A0P0V5C3_ORYSJ Os01g0621300 OSNPB_010621300 ENOG411E1WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytokinin riboside 5'-monophosphate phosphoribohydrolase NA NA NA NA NA NA NA ENOG411E1WY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM NA NA NA NA NA NA NA ENOG411E1WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Os04g0301500 protein (cDNA, clone: J075170K16, full insert sequence) Q0JEB7 Q0JEB7_ORYSJ Os04g0301500 Os04g0301500 OSNPB_040301500 ENOG411E1WT Q9FNP2 GDL75_ARATH GDSL esterase/lipase At5g08460 (EC 3.1.1.-) (Extracellular lipase At5g08460) ARA:AT5G08460-MONOMER; 3.1.1.- 42417 GDSL esterase/lipase At5g08460 (EC 3.1.1.-) (Extracellular lipase At5g08460) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2159547; AT5G08460 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411E929 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1W4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os08g0474800 protein (Os08g0474866 protein),Os05g0415300 protein Q0J520,B9FIN4 Q0J520_ORYSJ,B9FIN4_ORYSJ Os08g0474866 Os08g0474800 OSNPB_080474866,Os05g0415300 OsJ_18553 OSNPB_050415300 ENOG411DZKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Os01g0640600 protein (Pectin-glucuronyltransferase-like) Q5VNX0 Q5VNX0_ORYSJ Os01g0640600 Os01g0640600 OSNPB_010640600 P0039G05.11 ENOG411DZKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0462200 protein,Os09g0443000 protein A0A0P0XGR6,A0A0P0XNQ3 A0A0P0XGR6_ORYSJ,A0A0P0XNQ3_ORYSJ Os08g0462200 OSNPB_080462200,Os09g0443000 OSNPB_090443000 ENOG411DZKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Invertase_neut Invertase, putative (Neutral/alkaline invertase, putative, expressed) (Os11g0175400 protein) Q53PH5 Q53PH5_ORYSJ LOC_Os11g07440 Os11g0175400 OsJ_33156 OSNPB_110175400 ENOG411DZKC Q8RUX8,A0A1I9LPE9,Q682I4,A0A1I9LPE8 Q8RUX8_ARATH,A0A1I9LPE9_ARATH,Q682I4_ARATH,A0A1I9LPE8_ARATH At2g44525 (Expressed protein) (NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598)),NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598),NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598) (Uncharacterized protein At3g60150) 19057,14266,19129,17352 At2g44525 (Expressed protein) (NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598)),NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598),NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598) (Uncharacterized protein At3g60150) mitochondrial respiratory chain complex I assembly [GO:0032981] locus:3436179;,locus:2101437; AT2G44525,AT3G60150 NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor 3-like Nuclear protein E3-3, isoform a, putative, expressed (Os10g0571100 protein),Os03g0590700 protein (Fragment) Q108W6,A0A0P0VZT1 Q108W6_ORYSJ,A0A0P0VZT1_ORYSJ LOC_Os10g42090 Os10g0571100 OSNPB_100571100,Os03g0590700 OSNPB_030590700 ENOG411DZKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0152800 protein (cDNA clone:J013039B21, full insert sequence) Q5VMI9 Q5VMI9_ORYSJ Os06g0152800 Os06g0152800 OSNPB_060152800 P0529C07.39 P0710H01.51 ENOG411DZKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 Formin-like protein 15 (OsFH15) Q69MT2 FH15_ORYSJ FH15 Os09g0517600 LOC_Os09g34180 OSJNBb0034B12.29 ENOG411DZKJ F26O13.20 Q9SD11 Q9SD11_ARATH At3g51380 (IQ-domain 20) (Uncharacterized protein F26O13.20) 11817 At3g51380 (IQ-domain 20) (Uncharacterized protein F26O13.20) membrane [GO:0016020]; binding of sperm to zona pellucida [GO:0007339] locus:2081775; AT3G51380 IQ-domain 20 Os04g0561100 protein,IQ calmodulin-binding motif family protein, expressed (Os03g0134800 protein) B9FBY1,Q8H8D5 B9FBY1_ORYSJ,Q8H8D5_ORYSJ Os04g0561100 OsJ_15771 OSNPB_040561100,Os03g0134800 LOC_Os03g04210 OJ1006F06.10 OSNPB_030134800 ENOG411DZKI FBL10 Q9SDA8,A0A1P8B1Z8,A0A1P8B1X8 FBL10_ARATH,A0A1P8B1Z8_ARATH,A0A1P8B1X8_ARATH F-box/LRR-repeat protein 10,F-box/RNI-like superfamily protein 72282,69089,53588 F-box/LRR-repeat protein 10,F-box/RNI-like superfamily protein locus:2827644; AT2G17020 F-box LRR-repeat protein Leucine Rich Repeat family protein, expressed (Os03g0135400 protein) Q10S47 Q10S47_ORYSJ Os03g0135400 LOC_Os03g04270 Os03g0135400 OSNPB_030135400 ENOG411DZKH SBT5.5,SBT5.6 F4KEL0,Q9FK76 SBT55_ARATH,SBT56_ARATH Subtilisin-like protease SBT5.5 (EC 3.4.21.-) (Subtilase subfamily 5 member 5) (AtSBT5.5),Subtilisin-like protease SBT5.6 (EC 3.4.21.-) (Subtilase subfamily 5 member 6) (AtSBT5.6) ARA:AT5G45650-MONOMER; 3.4.21.- 87925,85146 Subtilisin-like protease SBT5.5 (EC 3.4.21.-) (Subtilase subfamily 5 member 5) (AtSBT5.5),Subtilisin-like protease SBT5.6 (EC 3.4.21.-) (Subtilase subfamily 5 member 6) (AtSBT5.6) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252] locus:2172018;,locus:2171938; AT5G45640,AT5G45650 subtilisin-like protease-like Os01g0727800 protein (Fragment),Os01g0727840 protein Q0JJP0,A0A0P0V7R1 Q0JJP0_ORYSJ,A0A0P0V7R1_ORYSJ Os01g0727800 Os01g0727800 OSNPB_010727800,Os01g0727840 OSNPB_010727840 ENOG411DZKW PME43 O23447,A0A1P8B5T5 PME43_ARATH,A0A1P8B5T5_ARATH Putative pectinesterase/pectinesterase inhibitor 43 [Includes: Pectinesterase inhibitor 43 (Pectin methylesterase inhibitor 43); Pectinesterase 43 (PE 43) (EC 3.1.1.11) (Pectin methylesterase 43) (AtPME43)],Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}.,FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589, ECO:0000256|SAAS:SAAS00560367}. ARA:AT4G15980-MONOMER; 3.1.1.11; 3.1.1.11 78573,79827 Putative pectinesterase/pectinesterase inhibitor 43 [Includes: Pectinesterase inhibitor 43 (Pectin methylesterase inhibitor 43); Pectinesterase 43 (PE 43) (EC 3.1.1.11) (Pectin methylesterase 43) (AtPME43)],Pectinesterase (EC 3.1.1.11) apoplast [GO:0048046]; cell periphery [GO:0071944]; cell wall [GO:0005618]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; enzyme inhibitor activity [GO:0004857]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}. locus:2129865; AT4G15980 pectinesterase OSJNBa0063C18.2 protein (OSJNBb0079B02.7 protein) (Os04g0641200 protein) Q7X6L1 Q7X6L1_ORYSJ Os04g0641200 Os04g0641200 OsJ_16366 OSJNBa0063C18.2 OSJNBb0079B02.7 OSNPB_040641200 ENOG411DZKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os12g0514000 protein (Sugar transporter family protein, expressed) (cDNA clone:J013000J11, full insert sequence) Q2QPX7 Q2QPX7_ORYSJ Os12g0514000 LOC_Os12g32940 Os12g0514000 OSNPB_120514000 ENOG411DZKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA monogalactosyldiacylglycerol synthase Probable monogalactosyldiacylglycerol synthase 2, chloroplastic (OsMGD2) (EC 2.4.1.46),Os08g0299400 protein (Fragment) Q6UTZ2,A0A0P0XEB8 MGDG2_ORYSJ,A0A0P0XEB8_ORYSJ MGD2 Os08g0299400 LOC_Os08g20420 OsJ_025729 OSJNBa0063H21.123 OSJNBa0070J19.22 P0045D08.104,Os08g0299400 OSNPB_080299400 FUNCTION: Involved in the synthesis of the major structural component of photosynthetic membranes. {ECO:0000250}. ENOG411DZK2 NRPE7 A6QRA1 NRPE7_ARATH DNA-directed RNA polymerase V subunit 7 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase V involved in RNA-directed DNA methylation-dependent (RdDM) silencing of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}. 20262 DNA-directed RNA polymerase V subunit 7 DNA-directed RNA polymerase V complex [GO:0000419]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; single-stranded DNA binding [GO:0003697]; single-stranded RNA binding [GO:0003727]; transcription, DNA-templated [GO:0006351] locus:2130060; AT4G14660 DNA-directed RNA polymerase Os05g0157100 protein (Putative RNA polymerase II) (cDNA clone:001-102-A10, full insert sequence),Os05g0224700 protein Q75M02,A0A0P0WJH1 Q75M02_ORYSJ,A0A0P0WJH1_ORYSJ Os05g0157100 OsJ_17187 OSNPB_050157100 P0676G05.11,Os05g0224700 OSNPB_050224700 ENOG411DZK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: one zinc finger protein Os05g0515700 protein,Os01g0753000 protein Q0DGR8,A0A0P0V8A9 Q0DGR8_ORYSJ,A0A0P0V8A9_ORYSJ Os05g0515700 Os05g0515700 OSNPB_050515700,Os01g0753000 OSNPB_010753000 ENOG411DZK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os07g0466500 protein A0A0N7KNE6 A0A0N7KNE6_ORYSJ Os07g0466500 OSNPB_070466500 ENOG411DZK8 HSFA2 O80982,B3H5P6 HSFA2_ARATH,B3H5P6_ARATH Heat stress transcription factor A-2 (AtHsfA2) (AtHsf-04),Heat shock transcription factor A2 DISRUPTION PHENOTYPE: Heat-sensitive phenotype. {ECO:0000269|PubMed:20521085}. Sensitive to high temperature-T. Wang-2007 FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs). {ECO:0000269|PubMed:16649111, ECO:0000269|PubMed:17059409, ECO:0000269|PubMed:17085506}. MISCELLANEOUS: Plants overexpressing HSFA2 show increased tolerance to combined environmental stresses. R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 39114,32809 Heat stress transcription factor A-2 (AtHsfA2) (AtHsf-04),Heat shock transcription factor A2 cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cellular response to heat [GO:0034605]; cellular response to hypoxia [GO:0071456]; cellular response to unfolded protein [GO:0034620]; heat acclimation [GO:0010286]; positive regulation of transcription, DNA-templated [GO:0045893]; response to chitin [GO:0010200]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; response to hypoxia [GO:0001666]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2057371; AT2G26150 heat shock transcription factor NA NA NA NA NA NA NA ENOG411EDRE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retinal pigment epithelial membrane protein NA NA NA NA NA NA NA ENOG411EDRA PAT01,PAT02 B3DN87,O80685 ZDH12_ARATH,ZDHC4_ARATH Probable protein S-acyltransferase 1 (EC 2.3.1.225) (Probable palmitoyltransferase At3g56920) (Zinc finger DHHC domain-containing protein At3g56920),Probable protein S-acyltransferase 2 (EC 2.3.1.225) (Probable palmitoyltransferase At2g40990) (Zinc finger DHHC domain-containing protein At2g40990) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.4}.,FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.3}. 2.3.1.225; 2.3.1.225 38669,46992 Probable protein S-acyltransferase 1 (EC 2.3.1.225) (Probable palmitoyltransferase At3g56920) (Zinc finger DHHC domain-containing protein At3g56920),Probable protein S-acyltransferase 2 (EC 2.3.1.225) (Probable palmitoyltransferase At2g40990) (Zinc finger DHHC domain-containing protein At2g40990) endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706],cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] TISSUE SPECIFICITY: Expressed in flowers and pollen. {ECO:0000269|PubMed:22968831}. locus:2103650;,locus:2063172; AT3G56920,AT2G40990 DHHC palmitoyltransferase NA NA NA NA NA NA NA ENOG411ED5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Alpha beta hydrolase NA NA NA NA NA NA NA ENOG411EDRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDRI KCS16 Q9SYZ0 KCS16_ARATH 3-ketoacyl-CoA synthase 16 (KCS-16) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 16) (VLCFA condensing enzyme 16) PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT4G34250-MONOMER; 2.3.1.199 55778 3-ketoacyl-CoA synthase 16 (KCS-16) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 16) (VLCFA condensing enzyme 16) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:18465198}. locus:2116144; AT4G34250 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411E0SJ F24B22.20 Q5S4W1,Q9M397,Q5XVA3 Q5S4W1_ARATH,Q9M397_ARATH,Q5XVA3_ARATH Myosin-M heavy protein,Myosin-M heavy protein (Uncharacterized protein F24B22.20) 52477,49289,47897 Myosin-M heavy protein,Myosin-M heavy protein (Uncharacterized protein F24B22.20) locus:2065593;,locus:2080230; AT2G37960,AT3G54060 NA Os03g0100010 protein A0A0P0VRQ9 A0A0P0VRQ9_ORYSJ Os03g0100010 OSNPB_030100010 ENOG411E0SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0287900 protein (cDNA clone:002-102-E06, full insert sequence),Os02g0294100 protein (cDNA clone:001-206-E10, full insert sequence),OSJNBa0054D14.5 protein (Os04g0324600 protein),Os02g0288000 protein (cDNA clone:002-145-G04, full insert sequence),OSJNBa0087H01.6 protein (Os04g0313500 protein),Os02g0287800 protein Q0E1Z5,Q0E1X1,Q7XKM1,Q6K8B1,Q7XW19,A0A0P0VHP5 Q0E1Z5_ORYSJ,Q0E1X1_ORYSJ,Q7XKM1_ORYSJ,Q6K8B1_ORYSJ,Q7XW19_ORYSJ,A0A0P0VHP5_ORYSJ Os02g0287900 Os02g0287900 OSNPB_020287900,Os02g0294100 Os02g0294100 OsJ_06340 OSNPB_020294100,OSJNBa0054D14.5 Os04g0324600 OSNPB_040324600,Os02g0288000 OJ1756_H07.26 OsJ_06295 OSNPB_020288000,Os04g0313500 OSJNBa0087H01.6 OSNPB_040313500,Os02g0287800 OSNPB_020287800 ENOG411E0SF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 Putative B3 domain-containing protein Os03g0621600,Os03g0621600 protein,Os03g0621650 protein,Os03g0621900 protein Q851V5,Q851V1,A0A0P0W094,A0A0P0W0A3,A0A0N7KHN5 Y3216_ORYSJ,Y3160_ORYSJ,A0A0P0W094_ORYSJ,A0A0P0W0A3_ORYSJ,A0A0N7KHN5_ORYSJ Os03g0621600 LOC_Os03g42370 OSJNBb0111B07.17,Os03g0621600 LOC_Os03g42410 OSJNBb0111B07.21,Os03g0621600 OSNPB_030621600,Os03g0621650 OSNPB_030621650,Os03g0621900 OSNPB_030621900 ENOG411E0SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF863) Expressed protein (Os10g0553900 protein) (cDNA clone:J023115O15, full insert sequence),Os10g0553900 protein (Fragment) Q9AV09,A0A0P0XX09 Q9AV09_ORYSJ,A0A0P0XX09_ORYSJ Os10g0553900 LOC_Os10g40580 Os10g0553900 OsJ_32409 OSJNBb0014I11.11 OSNPB_100553900,Os10g0553900 OSNPB_100553900 ENOG411E0SD Q8RY09,Q2V3X5 Q8RY09_ARATH,Q2V3X5_ARATH AT3g08780/F17O14_25 (BRISC complex subunit Abro1-like protein),AT3G08780 protein (BRISC complex subunit Abro1-like protein) 34486,34282 AT3g08780/F17O14_25 (BRISC complex subunit Abro1-like protein),AT3G08780 protein (BRISC complex subunit Abro1-like protein) nucleus [GO:0005634]; polyubiquitin modification-dependent protein binding [GO:0031593] locus:2077798; AT3G08780 NA Os04g0479300 protein (Fragment),Os07g0540200 protein (cDNA clone:001-205-A11, full insert sequence) Q0JCC9,Q7XHK9 Q0JCC9_ORYSJ,Q7XHK9_ORYSJ Os04g0479300 Os04g0479300 OSNPB_040479300,P0458H05.113 Os07g0540200 OsJ_24600 OSNPB_070540200 ENOG411E0SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein expressed F-box domain containing protein, expressed (Os03g0202500 protein),Os09g0506450 protein (Fragment),Os09g0506700 protein,Os09g0325220 protein (Fragment),Os09g0510900 protein Q10QB3,A0A0P0XPM6,A0A0P0XP61,A0A0P0XKM3,A0A0N7KR34 Q10QB3_ORYSJ,A0A0P0XPM6_ORYSJ,A0A0P0XP61_ORYSJ,A0A0P0XKM3_ORYSJ,A0A0N7KR34_ORYSJ LOC_Os03g10540 Os03g0202500 OSNPB_030202500,Os09g0506450 OSNPB_090506450,Os09g0506700 OSNPB_090506700,Os09g0325220 OSNPB_090325220,Os09g0510900 OSNPB_090510900 ENOG411E0SZ CYP76C4,CYP76G1 O64635,F4J865,F4J864,F4JD28 C76C4_ARATH,F4J865_ARATH,F4J864_ARATH,F4JD28_ARATH Cytochrome P450 76C4 (EC 1.14.-.-),Cytochrome P450, family 76, subfamily G, polypeptide 1,Cytochrome P450 superfamily protein ARA:AT2G45550-MONOMER; 1.14.-.- 56933,60502,58824,36074 Cytochrome P450 76C4 (EC 1.14.-.-),Cytochrome P450, family 76, subfamily G, polypeptide 1,Cytochrome P450 superfamily protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2043694;,locus:2085196;,locus:504955652; AT2G45550,AT3G52970,AT3G61035 cytochrome P450 NA NA NA NA NA NA NA ENOG411E0SX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cullin family Os01g0935300 protein (cDNA clone:001-107-B04, full insert sequence),Cullin 1B-like (Os01g0935300 protein) Q5JMQ5,Q5JMQ6 Q5JMQ5_ORYSJ,Q5JMQ6_ORYSJ P0492G09.21-2 Os01g0935300 P0423A12.51-2 OSNPB_010935300,P0492G09.21-1 P0423A12.51-1 Os01g0935300 OsJ_04678 OSNPB_010935300 ENOG411E0SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3354) Potassium channel AKT3,Os12g0118400 protein (Fragment),Os07g0175400 protein Q8H569,A0A0P0Y6C3,A0A0P0X310 AKT3_ORYSJ,A0A0P0Y6C3_ORYSJ,A0A0P0X310_ORYSJ Os07g0175400 LOC_Os07g07910 OJ1656_E11.135,Os12g0118400 OSNPB_120118400,Os07g0175400 OSNPB_070175400 FUNCTION: Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization (By similarity). {ECO:0000250}. ENOG411E0SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E0SU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPPc Inositol 1,4,5-trisphosphate 5-phosphatase-like protein (Os09g0394600 protein) Q6H453 Q6H453_ORYSJ Os09g0394600 Os09g0394600 B1040D06.9 B1339H09.16 OSNPB_090394600 ENOG411ED5G Q9C800 FB34_ARATH Putative F-box protein At1g33530 49956 Putative F-box protein At1g33530 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2006902; AT1G33530 FBOX NA NA NA NA NA NA NA ENOG411EDRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411E0S8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E0S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0642700 protein,Os01g0890200 protein,Os01g0642801 protein,Os05g0416701 protein A0A0N7KDE3,A0A0P0VBE8,A0A0P0V5S9,A0A0N7KKS6 A0A0N7KDE3_ORYSJ,A0A0P0VBE8_ORYSJ,A0A0P0V5S9_ORYSJ,A0A0N7KKS6_ORYSJ Os01g0642700 OSNPB_010642700,Os01g0890200 OSNPB_010890200,Os01g0642801 OSNPB_010642801,Os05g0416701 OSNPB_050416701 ENOG411E0S2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA xyloglucan endotransglucosylase hydrolase protein 30 Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Q84T83 Q84T83_ORYSJ LOC_Os03g63760 Os03g0854600 Os03g63760 OsJ_13419 OSNPB_030854600 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411E0S3 SDR3b Q94K41 SDR3B_ARATH Short-chain dehydrogenase reductase 3b (AtSDR3b) (EC 1.1.1.-) ARA:AT2G47140-MONOMER; R-ATH-77111; 1.1.1.- 26847 Short-chain dehydrogenase reductase 3b (AtSDR3b) (EC 1.1.1.-) oxidoreductase activity [GO:0016491] locus:2041394; AT2G47140 short-chain dehydrogenase reductase Os03g0833100 protein Q0DM18 Q0DM18_ORYSJ Os03g0833100 OSNPB_030833100 ENOG411E0S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411E0S1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os02g0732600 protein (Putative Myb51 protein) Q6Z2J9 Q6Z2J9_ORYSJ Os02g0732600 Os02g0732600 OsJ_08275 OSNPB_020732600 P0643A10.25 ENOG411E0S6 Q9M0V5 Q9M0V5_ARATH At4g05400 (Copper ion binding protein) (Uncharacterized protein AT4g05400) 27627 At4g05400 (Copper ion binding protein) (Uncharacterized protein AT4g05400) mitochondrial ribosome [GO:0005761]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507] locus:2115974; AT4G05400 NA Os01g0511200 protein (cDNA clone:001-016-F02, full insert sequence) Q5QMU6 Q5QMU6_ORYSJ Os01g0511200 Os01g0511200 OsJ_01973 OSJNBa0054L14.6 OSNPB_010511200 P0520B06.32 ENOG411E0S7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E0S4 VHA-c''1,VHA-c''2 Q9SZY7,Q9SLA2,A0A1P8B2H2,B3H4N3 VATO1_ARATH,VATO2_ARATH,A0A1P8B2H2_ARATH,B3H4N3_ARATH V-type proton ATPase subunit c''1 (V-ATPase subunit c''1) (Vacuolar H(+)-ATPase subunit c'' isoform 1) (Vacuolar proton pump subunit c''1),V-type proton ATPase subunit c''2 (V-ATPase subunit c''2) (Vacuolar H(+)-ATPase subunit c'' isoform 2) (Vacuolar proton pump subunit c''2),ATPase, F0/V0 complex, subunit C protein FUNCTION: Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. {ECO:0000269|PubMed:12909704}.,FUNCTION: Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By similarity). {ECO:0000250}. R-ATH-1222556;R-ATH-77387;R-ATH-917977; 18375,18219,24141,21761 V-type proton ATPase subunit c''1 (V-ATPase subunit c''1) (Vacuolar H(+)-ATPase subunit c'' isoform 1) (Vacuolar proton pump subunit c''1),V-type proton ATPase subunit c''2 (V-ATPase subunit c''2) (Vacuolar H(+)-ATPase subunit c'' isoform 2) (Vacuolar proton pump subunit c''2),ATPase, F0/V0 complex, subunit C protein endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035],integral component of membrane [GO:0016021]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled proton transport [GO:0015991],integral component of membrane [GO:0016021]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; vacuole [GO:0005773]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled proton transport [GO:0015991] TISSUE SPECIFICITY: Preferentially expressed in roots. {ECO:0000269|PubMed:18507826}. locus:2050286;,locus:2131337; AT4G32530,AT2G25610 V-type proton ATPase 21 kDa proteolipid Os01g0610100 protein (Vacuolar H+-exporting ATPase chain c.PPA1-like) (cDNA clone:001-110-C12, full insert sequence) (cDNA clone:006-205-A07, full insert sequence) Q9AX79 Q9AX79_ORYSJ Os01g0610100 Os01g0610100 OsJ_02567 OSNPB_010610100 P0410E03.20 ENOG411E0S5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase GDSL-lipase-like (Os06g0725100 protein) Q5Z983 Q5Z983_ORYSJ Os06g0725100 OSNPB_060725100 P0548E04.9 ENOG411DS7Q Q0WPW4 ACCO5_ARATH 1-aminocyclopropane-1-carboxylate oxidase 5 (ACC oxidase 5) (AtACO5) (EC 1.14.17.4) FUNCTION: Enzyme involved in the ethylene biosynthesis. {ECO:0000250}. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 2/2. ARA:AT1G77330-MONOMER; 1.14.17.4 34947 1-aminocyclopropane-1-carboxylate oxidase 5 (ACC oxidase 5) (AtACO5) (EC 1.14.17.4) 1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; L-ascorbic acid binding [GO:0031418]; metal ion binding [GO:0046872]; defense response [GO:0006952]; ethylene biosynthetic process [GO:0009693] locus:2031422; AT1G77330 1-aminocyclopropane-1-carboxylate oxidase Os05g0149400 protein (Putative 1-aminocyclopropane-1-carboxylate oxidase) (cDNA clone:006-206-B08, full insert sequence),Os05g0149300 protein (Fragment) Q65XE5,A0A0P0WI62 Q65XE5_ORYSJ,A0A0P0WI62_ORYSJ Os05g0149400 Os05g0149400 OJ1504_G04.9 OSNPB_050149400,Os05g0149300 OSNPB_050149300 ENOG411DS7T F4IYF8 SYHC_ARATH Histidine--tRNA ligase, cytoplasmic (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) 6.1.1.21 97537 Histidine--tRNA ligase, cytoplasmic (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) cytosol [GO:0005829]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; histidine-tRNA ligase activity [GO:0004821]; histidyl-tRNA aminoacylation [GO:0006427]; mitochondrial translation [GO:0032543] locus:2075472; AT3G02760 Histidyl-tRNA Histidine--tRNA ligase, cytoplasmic (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS),Os05g0150900 protein P93422,A0A0P0WI14,A0A0P0WHZ5 SYHC_ORYSJ,A0A0P0WI14_ORYSJ,A0A0P0WHZ5_ORYSJ Os05g0150900 LOC_Os05g05840 P0001A07.8,Os05g0150900 OSNPB_050150900 ENOG411DS7U GCN2 Q9LX30,F4J8A5,A0A1I9LN28,A0A1I9LN30 GCN2_ARATH,F4J8A5_ARATH,A0A1I9LN28_ARATH,A0A1I9LN30_ARATH eIF-2-alpha kinase GCN2 (serine/threonine-protein kinase GCN2) (EC 2.7.11.1),Protein kinase family protein FUNCTION: Metabolic-stress sensing protein kinase that phosphorylates the alpha subunit of eukaryotic translation initiation factor 2 eIF-2-alpha in response to low amino acid availability. Plays a role as an activator of the general amino acid control pathway required for adapatation to amino acid starvation. Converts phosphorylated eIF-2-alpha either to a competitive inhibitor of translation initiation, leading to a global protein synthesis repression, and thus to a reduced overall utilization of amino acids, or to a translational initiation activation of specific mRNAs, and hence allowing reprogramming of amino acid biosynthetic gene expression to alleviate nutrient depletion. Binds uncharged tRNAs. {ECO:0000250|UniProtKB:P15442}. 2.7.11.1 140322,142956,137189,140450 eIF-2-alpha kinase GCN2 (serine/threonine-protein kinase GCN2) (EC 2.7.11.1),Protein kinase family protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; tRNA binding [GO:0000049]; cellular response to amino acid starvation [GO:0034198]; cellular response to benomyl [GO:0072755]; cellular response to hydrogen peroxide [GO:0070301]; cellular stress response to acidic pH [GO:1990451]; regulation of translation [GO:0006417]; translation [GO:0006412],ATP binding [GO:0005524]; eukaryotic translation initiation factor 2alpha kinase activity [GO:0004694]; tRNA binding [GO:0000049]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cellular amino acid metabolic process [GO:0006521]; response to herbicide [GO:0009635],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, buds, flowers, siliques and seedlings. {ECO:0000269|PubMed:12905023}. locus:2081217; AT3G59410 serine threonine-protein kinase Os04g0492600 protein (Fragment),Os04g0492500 protein (Fragment),Os04g0563600 protein Q0JC45,Q0JC46,A0A0P0WDV4 Q0JC45_ORYSJ,Q0JC46_ORYSJ,A0A0P0WDV4_ORYSJ Os04g0492600 Os04g0492600 OSNPB_040492600,Os04g0492500 Os04g0492500 OSNPB_040492500,Os04g0563600 OSNPB_040563600 ENOG411DS7J TMKL1 P33543 TMKL1_ARATH Putative kinase-like protein TMKL1 FUNCTION: Does not seem to have conserved a kinase activity. 73353 Putative kinase-like protein TMKL1 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2093121; AT3G24660 kinase-like protein Os08g0564700 protein Q0J3L9 Q0J3L9_ORYSJ Os08g0564700 Os08g0564700 OSNPB_080564700 ENOG411DS7K MRS2-11 Q058N4 MRS2B_ARATH Magnesium transporter MRS2-11, chloroplastic (Magnesium Transporter 10) (AtMGT10) FUNCTION: High-affinity magnesium transporter that mediates the influx of magnesium in chloroplast. {ECO:0000269|PubMed:11752386, ECO:0000269|Ref.5}. MISCELLANEOUS: Has the ability to complement a mutant in yeast lacking magnesium transport capability. 51093 Magnesium transporter MRS2-11, chloroplastic (Magnesium Transporter 10) (AtMGT10) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; magnesium ion transmembrane transporter activity [GO:0015095] TISSUE SPECIFICITY: Expressed in the green part of the plant. Preferentially expressed in the spongy mesophyll cells and stomata of young leaves but also detected in cotyledons and at the base of the leaf petioles. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19966073, ECO:0000269|Ref.6}. locus:2172641; AT5G22830 magnesium transporter Magnesium transporter MRS2-A, chloroplastic Q9AUK4 MRS2A_ORYSJ MRS2-A Os03g0684400 LOC_Os03g48000 OsJ_12139 OSJNBb0072E24.13 FUNCTION: Magnesium transporter that may mediate the influx of magnesium in chloroplast. {ECO:0000250}. ENOG411DS7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glucan endo-1-3-beta-glucosidase Os11g0577800 protein (Fragment) A0A0P0Y3N8 A0A0P0Y3N8_ORYSJ Os11g0577800 OSNPB_110577800 ENOG411DS7N Q9FXG2,O23627,F4J376,A0A1I9LP49 SYGC_ARATH,SYGM1_ARATH,F4J376_ARATH,A0A1I9LP49_ARATH Putative glycine--tRNA ligase, cytoplasmic (EC 6.1.1.14) (Diadenosine tetraphosphate synthetase) (AP-4-A synthetase) (Glycyl-tRNA synthetase) (GlyRS),Glycine--tRNA ligase, mitochondrial 1 (EC 6.1.1.14) (Diadenosine tetraphosphate synthetase) (AP-4-A synthetase) (Glycyl-tRNA synthetase 1) (GlyRS-1),Class II aaRS and biotin synthetases superfamily protein FUNCTION: Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the attachment of glycine to tRNA(Gly). Is also able to produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs. {ECO:0000250|UniProtKB:P41250}. ARA:AT1G29870-MONOMER;,ARA:AT1G29880-MONOMER; 6.1.1.14; 6.1.1.14 52168,81944,27802,24510 Putative glycine--tRNA ligase, cytoplasmic (EC 6.1.1.14) (Diadenosine tetraphosphate synthetase) (AP-4-A synthetase) (Glycyl-tRNA synthetase) (GlyRS),Glycine--tRNA ligase, mitochondrial 1 (EC 6.1.1.14) (Diadenosine tetraphosphate synthetase) (AP-4-A synthetase) (Glycyl-tRNA synthetase 1) (GlyRS-1),Class II aaRS and biotin synthetases superfamily protein mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glycine-tRNA ligase activity [GO:0004820]; protein dimerization activity [GO:0046983]; diadenosine tetraphosphate biosynthetic process [GO:0015966]; mitochondrial glycyl-tRNA aminoacylation [GO:0070150],cytosol [GO:0005829]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; glycine-tRNA ligase activity [GO:0004820]; protein dimerization activity [GO:0046983]; diadenosine tetraphosphate biosynthetic process [GO:0015966]; mitochondrial glycyl-tRNA aminoacylation [GO:0070150]; response to cadmium ion [GO:0046686],mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glycine-tRNA ligase activity [GO:0004820]; mitochondrial glycyl-tRNA aminoacylation [GO:0070150],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; glycine-tRNA ligase activity [GO:0004820]; glycyl-tRNA aminoacylation [GO:0006426] locus:2019342;,locus:2019327;,locus:2101650; AT1G29870,AT1G29880,AT3G44740 Glycyl-tRNA synthetase Os08g0538000 protein (Putative glycyl-tRNA synthetase),Os08g0538000 protein (Fragment) Q6ZD35,A0A0P0XIQ4 Q6ZD35_ORYSJ,A0A0P0XIQ4_ORYSJ Os08g0538000 OsJ_28106 OSNPB_080538000 P0665C04.32,Os08g0538000 OSNPB_080538000 ENOG411DS7M Q9SGS1,Q9LN29,Q3ECC9 Q9SGS1_ARATH,Q9LN29_ARATH,Q3ECC9_ARATH tRNA pseudouridine synthase (EC 5.4.99.-),F14O10.3 protein (Pseudouridine synthase family protein) (Uncharacterized protein At1g20370) ARA:AT1G76120-MONOMER;,ARA:AT1G20370-MONOMER; 5.4.99.- 51782,61550,39380 tRNA pseudouridine synthase (EC 5.4.99.-),F14O10.3 protein (Pseudouridine synthase family protein) (Uncharacterized protein At1g20370) nucleus [GO:0005634]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; mRNA pseudouridine synthesis [GO:1990481]; tRNA pseudouridine synthesis [GO:0031119],cytosol [GO:0005829]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522]; tRNA processing [GO:0008033] locus:2199726;,locus:2012898; AT1G76120,AT1G20370 tRNA pseudouridine synthase Os02g0668400 protein (Putative pseudouridine synthase 1) Q6ESS0 Q6ESS0_ORYSJ Os02g0668400 Os02g0668400 OJ1725_H08.16 OSNPB_020668400 P0684A08.2 ENOG411DS7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase Os08g0476300 protein (Short-chain dehydrogenase/reductase family protein-like) (cDNA clone:001-119-C12, full insert sequence) Q6ZG50 Q6ZG50_ORYSJ Os08g0476300 OJ1111_E05.12 OsJ_27666 OSNPB_080476300 ENOG411DS7C PPR336 Q8LE47,Q9SAB4 PPR87_ARATH,PPR33_ARATH Pentatricopeptide repeat-containing protein At1g61870, mitochondrial (Protein PENTATRICOPEPTIDE REPEAT 336),Pentatricopeptide repeat-containing protein At1g11630, mitochondrial FUNCTION: May be involved in translation through its association with polysomes. Could bind RNA. 45758,46389 Pentatricopeptide repeat-containing protein At1g61870, mitochondrial (Protein PENTATRICOPEPTIDE REPEAT 336),Pentatricopeptide repeat-containing protein At1g11630, mitochondrial membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; nucleotide binding [GO:0000166]; RNA binding [GO:0003723]; RNA modification [GO:0009451],mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2036833;,locus:2027387; AT1G61870,AT1G11630 Pentatricopeptide repeat-containing protein Os01g0793200 protein (Fragment),Os01g0793200 protein (Putative drought-inducible protein 1OS) (cDNA clone:J023087D20, full insert sequence) Q0JIL7,Q8RUB8 Q0JIL7_ORYSJ,Q8RUB8_ORYSJ Os01g0793200 Os01g0793200 OSNPB_010793200,Os01g0793200 OSNPB_010793200 P0557A01.81 P0684C02.2 ENOG411DS7A VLN4 O65570 VILI4_ARATH Villin-4 DISRUPTION PHENOTYPE: No changes in the primary root length, but shorter root hairs. Increased sensitivity to latrunculin B (LatB) and instability of actin filaments. {ECO:0000269|PubMed:21275995, ECO:0000269|PubMed:22019634}. FUNCTION: Binds actin and actin filament bundles in a Ca(2+)-insensitive manner, but caps the barbed end of actin filaments and is able to sever them in a calcium-dependent manner. Involved in root hair growth through regulating actin organization in a Ca(2+)-dependent manner. {ECO:0000269|PubMed:21275995, ECO:0000269|PubMed:22019634}. 109327 Villin-4 cytoskeleton [GO:0005856]; cytosol [GO:0005829]; actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693]; actin filament depolymerization [GO:0030042]; actin filament organization [GO:0007015]; actin filament severing [GO:0051014]; cytoplasmic streaming [GO:0099636]; response to abscisic acid [GO:0009737]; root hair elongation [GO:0048767] TISSUE SPECIFICITY: Preferentially expressed in vegetative tissues. Detected in the whole seedling, hypocotyl, cotyledon, primary root, roots hair cells and trichomes. Expressed in flowers but not in the silique. {ECO:0000269|PubMed:21275995, ECO:0000269|PubMed:22019634}. locus:2128911; AT4G30160 Villin headpiece domain Villin-3,Villin-4,Villin-5 Q67U26,Q0JAD9,Q0J716 VLN3_ORYSJ,VLN4_ORYSJ,VLN5_ORYSJ VLN3 LOC_Os06g44890 Os06g0659300 B1047G05.32 OsJ_22231 OSJNBa0051O02.4 OSNPB_060659300,VLN4 LOC_Os04g51440 Os04g0604000 OsJ_16056 OSJNBa0041A02.24 OSNPB_040604000,VLN5 LOC_Os08g14230 Os08g0240800 OSNPB_080240800 FUNCTION: Ca(2+)-regulated actin-binding protein. Binds actin microfilaments (MFs). Involved in actin filament bundling, severing and capping. Caps the barbed end of actin filaments and is able to sever them in a calcium-dependent manner. MF severing is promoted by VLN1. {ECO:0000269|PubMed:20807878}.,FUNCTION: Ca(2+)-regulated actin-binding protein (By similarity). Binds actin microfilaments (MFs). Involved in actin filament bundling, severing and capping. Caps the barbed end of actin filaments and is able to sever them in a calcium-dependent manner (By similarity). {ECO:0000250|UniProtKB:O81644, ECO:0000250|UniProtKB:Q10L71}. ENOG411DS7G CYCU4-3,CYCU4-2 Q9FKF6,Q9LY16 CCU43_ARATH,CCU42_ARATH Cyclin-U4-3 (CycU4;3) (Cyclin-P4.2) (CycP4;2),Cyclin-U4-2 (CycU4;2) (Cyclin-P4.3) (CycP4;3) 25311,25005 Cyclin-U4-3 (CycU4;3) (Cyclin-P4.2) (CycP4;2),Cyclin-U4-2 (CycU4;2) (Cyclin-P4.3) (CycP4;3) protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] TISSUE SPECIFICITY: Expressed at low levels in roots, stems and flowers. Expressed in the shoot apex, leaf primordia and young leaves. {ECO:0000269|PubMed:15197472}.,TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in the shoot apex, leaf primordia and young leaves. {ECO:0000269|PubMed:15197472}. locus:2151656;,locus:2183394; AT5G61650,AT5G07450 Cyclin Cyclin Q6H3X9 Q6H3X9_ORYSJ Os02g0652000 Os02g0652000 OSJNBb0012J10.31 OSNPB_020652000 P0491E01.9 ENOG411DS7E Q9ASZ4 Q9ASZ4_ARATH At3g17900/MEB5_12 (Heat-inducible transcription repressor) 91581 At3g17900/MEB5_12 (Heat-inducible transcription repressor) locus:2088495; AT3G17900 NA Expressed protein (Os03g0152800 protein),Os03g0152800 protein (Fragment) Q10RM9,A0A0N7KGL4 Q10RM9_ORYSJ,A0A0N7KGL4_ORYSJ Os03g0152800 LOC_Os03g05812 OSNPB_030152800,Os03g0152800 OSNPB_030152800 ENOG411DS78 QRT3 O49432,A0A1P8B8B8,A0A1P8B8C8 QRT3_ARATH,A0A1P8B8B8_ARATH,A0A1P8B8C8_ARATH Polygalacturonase QRT3 (AtQRT3) (PG QRT3) (EC 3.2.1.15) (Pectinase QRT3) (Protein QUARTET 3),Pectin lyase-like superfamily protein DISRUPTION PHENOTYPE: The mature pollen grains are arranged in a tetrad. A layer of material is frequently deposited on the surface of the distal region of the pollen grains. {ECO:0000269|PubMed:14551328}. No visible phenotype.,Produced only monads (like wild-type).,Pollen grains are released as tetrads whereas wild-type grains are released as monads.,The mutant has a layer of deposited material on the surface of the distal region of the pollen grains. Tetrad pollen-C. Somerville-2003 FUNCTION: Polygalacturonase required for degrading the pollen mother cell wall during microspore development. {ECO:0000269|PubMed:14551328}. ARA:AT4G20050-MONOMER; 3.2.1.15 51659,41188,54518 Polygalacturonase QRT3 (AtQRT3) (PG QRT3) (EC 3.2.1.15) (Pectinase QRT3) (Protein QUARTET 3),Pectin lyase-like superfamily protein cell wall [GO:0005618]; extracellular region [GO:0005576]; polygalacturonase activity [GO:0004650]; cell wall organization [GO:0071555]; metabolic process [GO:0008152]; microsporogenesis [GO:0009556]; pollen exine formation [GO:0010584],lyase activity [GO:0016829] DEVELOPMENTAL STAGE: Transiently expressed during the early microspore stage. {ECO:0000269|PubMed:14551328}. TISSUE SPECIFICITY: Expressed in the tapetum cells in the anthers and in the ovules of open flowers. {ECO:0000269|PubMed:14551328}. locus:2119832; AT4G20050 polygalacturonase QRT3-like Os04g0613200 protein (cDNA clone:001-204-C08, full insert sequence) Q0JA71 Q0JA71_ORYSJ Os04g0613200 Os04g0613200 OSNPB_040613200 ENOG411DS79 ZYP1B,ZYP1A,ZYP1a,ZYP1b P61430,Q9LME2,A0A1P8ARU6,A0A1P8AWS1,A0A1P8ARS4,A0A1P8AWY4 SYCP2_ARATH,SYCP1_ARATH,A0A1P8ARU6_ARATH,A0A1P8AWS1_ARATH,A0A1P8ARS4_ARATH,A0A1P8AWY4_ARATH Synaptonemal complex protein 2 (Synaptonemal complex central region protein ZYP1b),Synaptonemal complex protein 1 (Synaptonemal complex central region protein ZYP1a),Myosin heavy chain-related protein Semi-sterile reduced fertility. Progress through prophase I meiosisI is delayed. Reduced fertility-F. Franklin-2005 FUNCTION: Required for chromosome synapsis and normal fidelity of crossing over. 99022,100007,97585,76805,92143,94703 Synaptonemal complex protein 2 (Synaptonemal complex central region protein ZYP1b),Synaptonemal complex protein 1 (Synaptonemal complex central region protein ZYP1a),Myosin heavy chain-related protein synaptonemal complex [GO:0000795]; cell division [GO:0051301]; reciprocal meiotic recombination [GO:0007131]; synapsis [GO:0007129] locus:505006139;,locus:2015031; AT1G22275,AT1G22260 Synaptonemal complex protein Synaptonemal complex protein ZEP1 Q7FAD5 ZEP1_ORYSJ ZEP1 Os04g0452500 LOC_Os04g37960 OSJNBa0027G07.1 DISRUPTION PHENOTYPE: Decreased pollen fertility due to abnormal synaptic behaviors and increased crossover formation during prophase I. {ECO:0000269|PubMed:20154151}. FUNCTION: Required for chromosome synapsis and regulates crossover frequency during meiosis. Acts as transverse filament protein and constitutes the central element of the synaptonemal complex. {ECO:0000269|PubMed:20154151}. ENOG411DS70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MBOAT membrane-bound O-acyltransferase family OSJNBa0009K15.16 protein (Os04g0277400 protein) (cDNA clone:002-152-C03, full insert sequence) Q0JEG8 Q0JEG8_ORYSJ Os04g0277400 Os04g0277400 OSJNBa0009K15.16 OSNPB_040277400 ENOG411DS75 PNSL1 O80634 PNSL1_ARATH Photosynthetic NDH subunit of lumenal location 1, chloroplastic (PsbP-like protein 2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17827269}. same as smb-3 single mutant,WT phenotype. RT-PCR confirmed that RPL23aA and RPL23aB transcript levels are similar between WT and homozygotes. Decreased post-illumination chlorophyll fluorescence; No other phenotypes detected-F. Sato-2007 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (Probable). Required for accumulation of the chloroplast NAD(P)H dehydrogenase (NDH) complex (PubMed:17827269). {ECO:0000269|PubMed:17827269, ECO:0000305}. 26963 Photosynthetic NDH subunit of lumenal location 1, chloroplastic (PsbP-like protein 2) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979]; transport [GO:0006810] locus:2039727; AT2G39470 PsbP-like protein 2 Os03g0279950 protein A0A0N7KH16 A0A0N7KH16_ORYSJ Os03g0279950 OSNPB_030279950 ENOG411EDKG dVPE Q9LJX8 VPED_ARATH Vacuolar-processing enzyme delta-isozyme (Delta-VPE) (EC 3.4.22.34) (Asparaginyl endopeptidase delta-VPE) DISRUPTION PHENOTYPE: No macroscopic phenotype, probably due to functional redundancy (PubMed:12417707, PubMed:14688293). In plants lacking all vacuolar-processing enzyme isozymes (e.g. alpha, beta, gamma and delta) shift of storage protein accumulation from normally processed polypeptides to a finite number of prominent alternatively processed polypeptides cleaved at sites other than the conserved Asn residues targeted by VPE (PubMed:14688293). Delayed cell death of the two layers of the seed coat (PubMed:15705955). {ECO:0000269|PubMed:12417707, ECO:0000269|PubMed:14688293, ECO:0000269|PubMed:15705955}. FUNCTION: Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles (By similarity). Probably involved in post-translational proteolysis of seed storage proteins in the protein storage vacuole of developing seeds (PubMed:12417707, PubMed:14688293). Exhibits a caspase-1-like activity in extracellular granules. At the early stage of seed development, required for the formation of the seed coat, by regulating cell death of specific cell layers in inner integument (PubMed:15705955). {ECO:0000250|UniProtKB:P49043, ECO:0000269|PubMed:12417707, ECO:0000269|PubMed:14688293, ECO:0000269|PubMed:15705955}. 3.4.22.34 52085 Vacuolar-processing enzyme delta-isozyme (Delta-VPE) (EC 3.4.22.34) (Asparaginyl endopeptidase delta-VPE) extracellular space [GO:0005615]; plant-type cell wall [GO:0009505]; protein storage vacuole [GO:0000326]; cysteine-type endopeptidase activity [GO:0004197]; programmed cell death [GO:0012501]; proteolysis involved in cellular protein catabolic process [GO:0051603]; seed coat development [GO:0010214]; vacuolar protein processing [GO:0006624] DEVELOPMENTAL STAGE: Specifically and transiently expressed in two cell layers of the seed coat (ii2 and ii3) at an early stage of seed development (at protein level). {ECO:0000269|PubMed:15705955}. TISSUE SPECIFICITY: Seed specific. Restricted to developing seeds at 7 days after anthesis, and, at lower levels, detected in flowers (PubMed:12417707, PubMed:14688293). Detected in siliques, specifically in seed coats (at protein level) (PubMed:15705955). {ECO:0000269|PubMed:12417707, ECO:0000269|PubMed:14688293, ECO:0000269|PubMed:15705955}. locus:2087625; AT3G20210 Peptidase C13 family NA NA NA NA NA NA NA ENOG411EDKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DREV methyltransferase NA NA NA NA NA NA NA ENOG411EDR2 CRK38 Q9XEC8,A0A1P8B5M0 CRK38_ARATH,A0A1P8B5M0_ARATH Cysteine-rich receptor-like protein kinase 38 (Cysteine-rich RLK38) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 38 2.7.11.- 72920,73164 Cysteine-rich receptor-like protein kinase 38 (Cysteine-rich RLK38) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 38 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2137154; AT4G04510 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EDKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: -phosphatase NA NA NA NA NA NA NA ENOG411EDR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DDE NA NA NA NA NA NA NA ENOG411EMF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411DUB3 B3H6K1,A0A1P8B5R9,A0A1P8B5R4 Y4791_ARATH,A0A1P8B5R9_ARATH,A0A1P8B5R4_ARATH Uncharacterized protein At4g17910,Transferases, transferring acyl groups R-ATH-162710; 48520,41590,51883 Uncharacterized protein At4g17910,Transferases, transferring acyl groups integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746]; GPI anchor biosynthetic process [GO:0006506] locus:2141080; AT4G17910 GWT1 GWT1 family protein, expressed (Os03g0378200 protein) (cDNA clone:J023042E14, full insert sequence) Q10KM5 Q10KM5_ORYSJ LOC_Os03g26090 Os03g0378200 OsJ_11046 OSNPB_030378200 ENOG411DUB2 Q9LSM5 ECD_ARATH Protein ecdysoneless homolog 73161 Protein ecdysoneless homolog nucleus [GO:0005634]; transcription coactivator activity [GO:0003713]; transcription from RNA polymerase II promoter [GO:0006366] locus:2154651; AT5G65490 Protein SGT1 homolog Os08g0447200 protein (Suppressor-like protein) Q6ZAC7 Q6ZAC7_ORYSJ Os08g0447200 OSNPB_080447200 P0409A07.7 P0429B05.28 ENOG411DUB1 KAS1,KASI P52410,F4KHF4 KASC1_ARATH,F4KHF4_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I),3-ketoacyl-acyl carrier protein synthase I Mutant kasI plants have multiple morphological defects including chlorotic (in netted patches) and curly leaves reduced fertility and semidwarfism. There are only one to five enlarged chloroplasts in the mesophyll cells of chlorotic sectors of young kasI rosette leaves indicating suppressed chloroplast division under KASI deficiency. KASI deficiency results in a significant change in the polar lipid composition disrupted embryo development before the globular stage and dramatically reduces FA levels (~33.6% of the wild type) in seeds. Embryo defective; Cotyledon; Homozygotes are viable: Semi-dwarf; Small, curled, variegated rosette leaves; Reduced fertility; Shriveled seeds; 2nd generation: Seedling lethal-H. Xue-2010 FUNCTION: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids (By similarity). {ECO:0000250}. ARA:AT5G46290-MONOMER;MetaCyc:AT5G46290-MONOMER; 2.3.1.41; 2.3.1.41 50413,52094 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I),3-ketoacyl-acyl carrier protein synthase I chloroplast stroma [GO:0009570]; 3-oxoacyl-[acyl-carrier-protein] synthase activity [GO:0004315]; fatty acid biosynthetic process [GO:0006633],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; plastid [GO:0009536]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; chloroplast fission [GO:0010020]; embryo development ending in seed dormancy [GO:0009793]; fatty acid biosynthetic process [GO:0006633]; response to cytokinin [GO:0009735] locus:2170428; AT5G46290 3-oxoacyl- acyl-carrier-protein synthase 3-oxoacyl-[acyl-carrier-protein] synthase B7F6I0,Q69YA2,Q0JCW9 B7F6I0_ORYSJ,Q69YA2_ORYSJ,Q0JCW9_ORYSJ Os04g0445700 OSNPB_040445700,Os06g0196600 Os06g0196600 OSNPB_060196600 P0528E04.26,Os04g0445700 Os04g0445700 OSNPB_040445700 ENOG411DUB6 F9L1.6 Q9XI57,A0A1P8APB9 Q9XI57_ARATH,A0A1P8APB9_ARATH F9L1.6 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ARA:AT1G15125-MONOMER; 38852,26945 F9L1.6 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:504956193; AT1G15125 methyltransferase NA NA NA NA NA NA NA ENOG411DUB5 IP5P11,5PTASE11 Q5EAF2,A0A1P8AUX2,A0A1P8AUV8,F4HT96 IP5PB_ARATH,A0A1P8AUX2_ARATH,A0A1P8AUV8_ARATH,F4HT96_ARATH Type IV inositol polyphosphate 5-phosphatase 11 (At5PTase11) (EC 3.1.3.36) (EC 3.1.3.86),Inositol polyphosphate 5-phosphatase 11 DISRUPTION PHENOTYPE: Alterations in germination and in dark-growth seedlings. Elevated level of Ins(1,4,5)P3 and InsP2 levels. {ECO:0000269|PubMed:18392779}. FUNCTION: Has phosphatase activity toward PtdIns(4,5)P2, and in vitro toward PtdIns(3,5)P2 and PtdIns(3,4,5)P3. Cannot dephosphorylate PtdIns(5)P, Ins(1,4,5)P3 and Ins(1,3,4,5)P4. {ECO:0000269|PubMed:15181205}. ARA:AT1G47510-MONOMER; R-ATH-1660514; 3.1.3.36; 3.1.3.86 37580,30715,27982,30317 Type IV inositol polyphosphate 5-phosphatase 11 (At5PTase11) (EC 3.1.3.36) (EC 3.1.3.86),Inositol polyphosphate 5-phosphatase 11 plasma membrane [GO:0005886]; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [GO:0043813]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; phosphatidylinositol dephosphorylation [GO:0046856]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651],hydrolase activity [GO:0016787]; phosphatidylinositol dephosphorylation [GO:0046856] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15181205}. locus:2015388; AT1G47510 type I inositol-145-trisphosphate 5-phosphatase Os03g0626500 protein A0A0P0W0Y8 A0A0P0W0Y8_ORYSJ Os03g0626500 OSNPB_030626500 ENOG411DUB4 MYB30,MYB96,F1P2.150,ATMYB31,MYB31,MYB94 Q9SCU7,Q9SPG0,Q24JK1,Q9SN78,Q9CA52,A0A1P8AMJ1,A0A1I9LLV4,A0A1I9LNA4,A0A1P8AMH1 MYB30_ARATH,Q9SPG0_ARATH,Q24JK1_ARATH,Q9SN78_ARATH,Q9CA52_ARATH,A0A1P8AMJ1_ARATH,A0A1I9LLV4_ARATH,A0A1I9LNA4_ARATH,A0A1P8AMH1_ARATH Transcription factor MYB30 (Myb-related protein 30) (AtMYB30),MYB96 transcription factor-like protein (Myb domain protein 96) (Putative transcription factor),At5g62470 (MYB96 transcription factor-like protein) (Myb domain protein 96),MYB transcription factor (Myb domain protein 94) (Putative transcription factor MYB94),At1g74650 (Myb domain protein 31) (Putative MYB family transcription factor; 97813-99093),Myb domain protein 31,Myb domain protein 94,Myb domain protein 30 DISRUPTION PHENOTYPE: Altered brassinosteroids response phenotypes (PubMed:19170933). Hypersensitivity to ABA during germination and seedling growth (PubMed:22814374). {ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:22814374}. Sensitive to brassinazole (inhibitor of brassinosteroid biosynthesis)-Y. Yin-2009,Increased lateral root number; Sensitive to drought-C. Park-2009 FUNCTION: Transcription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}.,FUNCTION: Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to DNA consensus sequences found in the promoters of genes encoding very-long-chain fatty acid-condensing enzymes involved in cuticular wax biosynthesis (PubMed:21398568). Functions together with MYB94 in the activation of cuticular wax biosynthesis (PubMed:27577115). Involved in drought stress response through abscisic acid (ABA) signaling. Mediates ABA signals that enhance plant resistance to drought by reducing stomatal opening. Mediates ABA-auxin cross-talk to regulate lateral root growth under drought stress conditions (PubMed:19625633). Involved in the regulation of ABA biosynthesis and ABA-dependent seed dormancy state. Binds to the promoters of NCED2 and NCED6, which are enzymes catalyzing the first step of ABA biosynthesis (PubMed:25616734). Regulates seed germination by controlling the expression of ABI4, a repressor of lipid breakdown during seed germination (PubMed:25869652). Binds to the promoter of LTP3 and transactivates LTP3 gene in response to drought stress and freezing (PubMed:23404903). Involved in cold stress response. Binds directly to the promoters of heptahelical protein (HHP) genes in response to cold stress. HHPs modulate the expression of SCRM/ICE1, SCRM2/ICE2 and CAMTA3, which are upstream regulators of cold-responsive C-repeat-binding factors (CBFs) (PubMed:25912720). Involved in defense responses against the bacterial pathogen Pseudomonas syringae. May act as a molecular link that mediates cross-talks between ABA and salicylate (PubMed:20149112). Involved in a crosstalk between the circadian clock and ABA signaling. Binds directly to the promoter of APRR1/TOC1 to activate its expression (PubMed:26725725). {ECO:0000269|PubMed:19625633, ECO:0000269|PubMed:20149112, ECO:0000269|PubMed:21398568, ECO:0000269|PubMed:23404903, ECO:0000269|PubMed:25616734, ECO:0000269|PubMed:25869652, ECO:0000269|PubMed:25912720, ECO:0000269|PubMed:26725725, ECO:0000269|PubMed:27577115}.,FUNCTION: Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}. MISCELLANEOUS: Plants overexpressing MYB96 exhibit a dwarf growth, altered leaf morphology, reduced lateral roots, and enhanced drought resistance (PubMed:19625633). The gain-of-function mutant myb96-1D (activation tagging) plants exhibit deposition of epicuticuar wax crystals on leaf surface (PubMed:21398568). The gain-of-function mutant myb96-1D (activation tagging) plants accumulate high levels of anthocyanins and salicylate (SA), express pathogenesis-related (PR) genes constitutively, and exhibit enhanced resistance to Pseudomonas syringae infection (PubMed:20149112). {ECO:0000269|PubMed:19625633, ECO:0000269|PubMed:20149112, ECO:0000269|PubMed:21398568}.,MISCELLANEOUS: Plants overexpressing MYB94 exhibit deposition of epicuticuar wax crystals on leaf surface. {ECO:0000269|PubMed:25305760}. 35919,39031,39188,37144,36969,27704,36607,27214,28234 Transcription factor MYB30 (Myb-related protein 30) (AtMYB30),MYB96 transcription factor-like protein (Myb domain protein 96) (Putative transcription factor),At5g62470 (MYB96 transcription factor-like protein) (Myb domain protein 96),MYB transcription factor (Myb domain protein 94) (Putative transcription factor MYB94),At1g74650 (Myb domain protein 31) (Putative MYB family transcription factor; 97813-99093),Myb domain protein 31,Myb domain protein 94,Myb domain protein 30 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; plant-type hypersensitive response [GO:0009626]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to bacterium [GO:0009617]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to hypoxia [GO:0001666]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351]; very long-chain fatty acid biosynthetic process [GO:0042761],DNA binding [GO:0003677],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of gene expression [GO:0010468]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to karrikin [GO:0080167]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to chitin [GO:0010200]; response to gibberellin [GO:0009739]; response to salicylic acid [GO:0009751] DEVELOPMENTAL STAGE: Expressed in 2-week-old seedlings, in the early stages of development. {ECO:0000269|PubMed:10571865}. TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, hypocotyl and roots. {ECO:0000269|PubMed:24587042}. locus:2090764;,locus:2154119;,locus:2079182;,locus:2019185; AT3G28910,AT5G62470,AT3G47600,AT1G74650 Transcription factor Os07g0484700 protein (cDNA clone:J013044E03, full insert sequence),Os07g0629000 protein (Putative myb protein),Os08g0437300 protein (Fragment) Q0D6F7,Q7X8X3,A0A0N7KPX1 Q0D6F7_ORYSJ,Q7X8X3_ORYSJ,A0A0N7KPX1_ORYSJ Os07g0484700 Os07g0484700 OSNPB_070484700,P0011H09.114 P0506F02.128 Os07g0629000 OSNPB_070629000,Os08g0437300 OSNPB_080437300 ENOG411DUB9 Q944A7 Y4523_ARATH Probable serine/threonine-protein kinase At4g35230 (EC 2.7.11.1) FUNCTION: Serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. Mediates signal transduction from BRI1 by functioning as substrate of BRI1 (PubMed:18653891). Functions as a positive regulator of plant immunity. May be involved in the regulation of pattern-triggered immunity (PTI) downstream of the flagellin receptor FLS2. Possesses kinase activity in vitro. Kinase activity is required for its function in innate immunity (PubMed:23532072). {ECO:0000269|PubMed:18653891, ECO:0000269|PubMed:23532072}. 2.7.11.1 56818 Probable serine/threonine-protein kinase At4g35230 (EC 2.7.11.1) membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468]; response to abscisic acid [GO:0009737] locus:2122058; AT4G35230 Serine threonine-protein kinase Os03g0132800 protein (Protein kinase family protein, putative, expressed) (cDNA clone:J033117I10, full insert sequence),Os07g0503400 protein Q10S67,A0A0P0X6S1 Q10S67_ORYSJ,A0A0P0X6S1_ORYSJ Os03g0132800 LOC_Os03g04050 Os03g0132800 OSNPB_030132800,Os07g0503400 OSNPB_070503400 ENOG411DUB8 P49243 FABH_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic (EC 2.3.1.180) (Beta-ketoacyl-ACP synthase III) (KAS III) Pale green leaves-T. Shikanai-2010 FUNCTION: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. KAS III catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities (By similarity). {ECO:0000250}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT1G62640-MONOMER; 2.3.1.180 42847 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic (EC 2.3.1.180) (Beta-ketoacyl-ACP synthase III) (KAS III) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 3-oxoacyl-[acyl-carrier-protein] synthase activity [GO:0004315]; beta-ketoacyl-acyl-carrier-protein synthase III activity [GO:0033818]; fatty acid biosynthetic process [GO:0006633] locus:2026167; AT1G62640 3-oxoacyl- acyl-carrier-protein synthase Os04g0643300 protein Q0J9M3 Q0J9M3_ORYSJ Os04g0643300 Os04g0643300 OSNPB_040643300 ENOG411DUBS GAMMACA2,GAMMACA1,GAMMA CA1 Q9C6B3,Q9FWR5,F4HP82 GCA2_ARATH,GCA1_ARATH,F4HP82_ARATH Gamma carbonic anhydrase 2, mitochondrial (AtCA2) (GAMMA CA2) (EC 4.2.1.-) (Transcription factor APFI),Gamma carbonic anhydrase 1, mitochondrial (AtCA1) (GAMMA CA1) (EC 4.2.1.-),Gamma carbonic anhydrase 1 DISRUPTION PHENOTYPE: Reduced levels of complex I and supercomplex I + III(2) in mitochondrion. Reduced growth rates and respiration of suspension cell culture. {ECO:0000269|PubMed:15935378}. FUNCTION: Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide (PubMed:19808034). Mediates complex I assembly in mitochondria and respiration. Binds HCO(3)-. Required for male fertility during anther development and dehiscence to regulate the secondary thickenings of the endothecial cell wall, probably by modulating H(2)O(2)-dependent lignin polymerization. {ECO:0000269|PubMed:15935378, ECO:0000269|PubMed:19326245, ECO:0000269|PubMed:19808034}.,FUNCTION: Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration (By similarity). {ECO:0000250}. ARA:AT1G47260-MONOMER;MetaCyc:AT1G47260-MONOMER;,ARA:AT1G19580-MONOMER; 4.2.1.- 30065,29971,23981 Gamma carbonic anhydrase 2, mitochondrial (AtCA2) (GAMMA CA2) (EC 4.2.1.-) (Transcription factor APFI),Gamma carbonic anhydrase 1, mitochondrial (AtCA1) (GAMMA CA1) (EC 4.2.1.-),Gamma carbonic anhydrase 1 chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; carbonate dehydratase activity [GO:0004089]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; anther dehiscence [GO:0009901]; photorespiration [GO:0009853]; protein homotrimerization [GO:0070207]; regulation of reactive oxygen species metabolic process [GO:2000377]; response to salt stress [GO:0009651],mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; carbonate dehydratase activity [GO:0004089]; metal ion binding [GO:0046872]; photorespiration [GO:0009853]; protein homotrimerization [GO:0070207] DEVELOPMENTAL STAGE: During flower development, first expressed in anthers and later in seeds. {ECO:0000269|PubMed:19326245}. TISSUE SPECIFICITY: Pollen (at protein level). Constitutively expressed in roots and leaves, with higher levels in flowers, particularly in tapetal tissue of anthers, inflorescence (IM) and floral meristems (FM). {ECO:0000269|PubMed:16242667, ECO:0000269|PubMed:19326245}. locus:2036741;,locus:2013104; AT1G47260,AT1G19580 gamma carbonic anhydrase Expressed protein (Os12g0169700 protein) (cDNA clone:J033150M03, full insert sequence),Os07g0642900 protein (Putative transcription factor APFI) (cDNA clone:006-310-G03, full insert sequence),Os01g0283100 protein (Putative gamma-carbonic anhydrase) (cDNA clone:001-035-F08, full insert sequence) (cDNA clone:006-304-F03, full insert sequence) (cDNA clone:J023109L19, full insert sequence) (cDNA clone:J033114G12, full insert sequence) Q2QX46,Q8GRK1,Q5N7E8 Q2QX46_ORYSJ,Q8GRK1_ORYSJ,Q5N7E8_ORYSJ LOC_Os12g07220 Os12g0169700 OsJ_35366 OSNPB_120169700,P0524G08.134 OJ1003_C06.118 Os07g0642900 OsJ_25319 OSNPB_070642900,Os01g0283100 OsJ_01333 OSNPB_010283100 P0581F09.18 ENOG411DUBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411DUBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os03g0701400 protein (Pentatricopeptide, putative, expressed) Q10EE2 Q10EE2_ORYSJ Os03g0701400 LOC_Os03g49464 OSNPB_030701400 ENOG411DUBV MRG7.22 Q9FK45 Q9FK45_ARATH RING/U-box superfamily protein (Uncharacterized protein At5g18260) 35673 RING/U-box superfamily protein (Uncharacterized protein At5g18260) locus:2172314; AT5G18260 RING Expressed protein (Os03g0326300 protein) (cDNA clone:J013050C14, full insert sequence),Os03g0326300 protein (Fragment),Os03g0326300 protein Q10M20,A0A0P0VXU2,A0A0P0VXR9 Q10M20_ORYSJ,A0A0P0VXU2_ORYSJ,A0A0P0VXR9_ORYSJ LOC_Os03g20980 Os03g0326300 OSNPB_030326300,Os03g0326300 OSNPB_030326300 ENOG411DUBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidase Os10g0155400 protein A0A0P0XRM7 A0A0P0XRM7_ORYSJ Os10g0155400 OSNPB_100155400 ENOG411DUBT T17J13.120 Q9M1Q8 Q9M1Q8_ARATH At3g62160 (HXXXD-type acyl-transferase family protein) (Uncharacterized protein T17J13.120) ARA:AT3G62160-MONOMER; 47554 At3g62160 (HXXXD-type acyl-transferase family protein) (Uncharacterized protein T17J13.120) N-acyltransferase activity [GO:0016410] locus:2097993; AT3G62160 3-n-debenzoyl-2-deoxytaxol Acyl transferase 4 (OsAT4) (EC 2.3.1.-) (p-coumaroyl-CoA monolignol transferase) (OsPMT),Os05g0136900 protein (cDNA clone:J023039O14, full insert sequence),Os04g0124233 protein,Os03g0446200 protein Q5JNT2,Q75L39,A0A0N7KIH9,A0A0P0VZ86 AT4_ORYSJ,Q75L39_ORYSJ,A0A0N7KIH9_ORYSJ,A0A0P0VZ86_ORYSJ AT4 PMT Os01g0291500 LOC_Os01g18744 OsJ_01392 P0706B05.17,Os05g0136900 OJ1127_B08.7 OSNPB_050136900,Os04g0124233 OSNPB_040124233,Os03g0446200 OSNPB_030446200 FUNCTION: Grass-specific monolignol p-coumaroyl transferase involved in the biosynthesis of acylated monolignols or monolignol conjugates that serve as monomer precursors of lignin. Can synthesize sinapyl p-coumarate, p-coumaryl p-coumarate, sinapyl caffeate and p-coumaryl caffeate in vitro. {ECO:0000269|PubMed:22267741}. ENOG411DUBY LYK4,LYK5 O64825,O22808 LYK4_ARATH,LYK5_ARATH LysM domain receptor-like kinase 4 (LysM-containing receptor-like kinase 4) (EC 2.7.11.1),Protein LYK5 (LysM domain receptor-like kinase 5) (LysM-containing receptor-like kinase 5) DISRUPTION PHENOTYPE: Reduced induction of chitin-responsive genes and diminished chitin-induced cytosolic calcium elevation, accompanied by an enhanced susceptibility to both the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 and the fungal pathogen Alternaria brassicicola. {ECO:0000269|PubMed:22744984}. FUNCTION: Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity. Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands. Involved in the resistance to the pathogenic fungus Alternaria brassicicola and to the bacterial pathogen the bacterial pathogen Pseudomonas syringae pv tomato DC3000, probably by sensing microbe-associated molecular pattern (MAMP) and pathogen-associated molecular patterns (PAMP). May play a role in detecting peptidoglycans (e.g. PGNs) during bacterial growth. {ECO:0000269|PubMed:22744984}.,FUNCTION: May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands. {ECO:0000250}. 2.7.11.1 66619,72569 LysM domain receptor-like kinase 4 (LysM-containing receptor-like kinase 4) (EC 2.7.11.1),Protein LYK5 (LysM domain receptor-like kinase 5) (LysM-containing receptor-like kinase 5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; chitin binding [GO:0008061]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; cellular response to chitin [GO:0071323]; cellular response to molecule of bacterial origin [GO:0071219]; innate immune response [GO:0045087]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; chitin binding [GO:0008061]; protein homodimerization activity [GO:0042803]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; cellular response to chitin [GO:0071323]; innate immune response [GO:0045087]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in roots, stems, leaves (predominantly in hydathodes, apical meristems and stipules) and buds. {ECO:0000269|PubMed:22744984}. locus:2049029;,locus:2050987; AT2G23770,AT2G33580 receptor-like protein kinase Os11g0557500 protein (Protein kinase domain containing protein, expressed),Os06g0625200 protein (Receptor protein kinase-like),Os02g0192900 protein (Os02g0193000 protein) (Fragment),Os06g0625300 protein Q2R2M3,Q69TY8,C7IYG9,A0A0P0WZC5 Q2R2M3_ORYSJ,Q69TY8_ORYSJ,C7IYG9_ORYSJ,A0A0P0WZC5_ORYSJ LOC_Os11g35330 Os11g0557500 OSNPB_110557500,Os06g0625200 OsJ_22029 OSJNBa0029G06.34 OSJNBa0072A21.3 OSNPB_060625200,Os02g0193000 Os02g0192900 OSNPB_020193000,Os06g0625300 OSNPB_060625300 ENOG411DUBX SOL1 Q9M9H7,F4IA17 SOL1_ARATH,F4IA17_ARATH Carboxypeptidase SOL1 (EC 3.4.17.-) (Protein SUPPRESSOR OF LLP1 1),Carboxypeptidase D same as smb-3 single mutant FUNCTION: Possesses in vitro carboxypeptidase activity against the C-terminal arginine and lysine residues. Involved in the maturation of CLE19. Removes the C-terminal arginine residue of CLE19 proprotein. The cleavage of the C-terminal arginine residue is necessary for CLE19 activity in vivo. Is not involved in generating active CLV3 (PubMed:24118638). Is not involved in CLE19 or CLV3 perception (PubMed:12932329, PubMed:24118638). {ECO:0000269|PubMed:12932329, ECO:0000269|PubMed:24118638}. 3.4.17.- 56046,48231 Carboxypeptidase SOL1 (EC 3.4.17.-) (Protein SUPPRESSOR OF LLP1 1),Carboxypeptidase D endosome membrane [GO:0010008]; extracellular space [GO:0005615]; integral component of membrane [GO:0016021]; metallocarboxypeptidase activity [GO:0004181]; serine-type carboxypeptidase activity [GO:0004185]; zinc ion binding [GO:0008270]; peptide metabolic process [GO:0006518]; protein processing [GO:0016485],integral component of membrane [GO:0016021]; metallocarboxypeptidase activity [GO:0004181]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:12932329}. locus:2824541; AT1G71696 Carboxypeptidase Os06g0144600 protein A0A0P0WSN8 A0A0P0WSN8_ORYSJ Os06g0144600 OSNPB_060144600 ENOG411DUBC PCMP-E29 Q9LVF9 PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470 58227 Pentatricopeptide repeat-containing protein At3g21470 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2089875; AT3G21470 Pentatricopeptide repeat-containing protein Os11g0460500 protein (Fragment),Os01g0880900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J023027J18, full insert sequence),Os11g0460700 protein (Fragment) C7J926,Q8LJJ8,A0A0P0Y219 C7J926_ORYSJ,Q8LJJ8_ORYSJ,A0A0P0Y219_ORYSJ Os11g0460500 OSNPB_110460500,Os01g0880900 OsJ_04297 OSNPB_010880900 P0018C10.56,Os11g0460700 OSNPB_110460700 ENOG411DUBA FRS5 Q9SZL8 FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 FUNCTION: Putative transcription activator involved in regulating light control of development. 90485 Protein FAR1-RELATED SEQUENCE 5 nucleus [GO:0005634]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2121060; AT4G38180 protein FAR1-RELATED SEQUENCE 5-like Os03g0655600 protein (Putative FAR1 protein) (Transposon protein, putative, unclassified, expressed),Os08g0337900 protein,Os03g0655600 protein (Fragment) Q6AT58,Q6ZC87,A0A0N7KHR5 Q6AT58_ORYSJ,Q6ZC87_ORYSJ,A0A0N7KHR5_ORYSJ Os03g0655600 LOC_Os03g45300 Os03g0655600 OSJNBb0023J24.3 OSNPB_030655600,P0702G08.9 Os08g0337900 OSNPB_080337900,Os03g0655600 OSNPB_030655600 ENOG411DUBG PCO3 Q1G3U6 PCO3_ARATH Plant cysteine oxidase 3 (EC 1.13.11.20) (NIFS-like protein 2) (NifS2) FUNCTION: Oxidizes N-terminal cysteine residues, thus preparing the protein for N-end rule pathway-mediated proteasomal degradation. {ECO:0000305|PubMed:24599061}. R-ATH-1614558; 1.13.11.20 31291 Plant cysteine oxidase 3 (EC 1.13.11.20) (NIFS-like protein 2) (NifS2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; cysteine dioxygenase activity [GO:0017172]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2014169; AT1G18490 2-aminoethanethiol dioxygenase-like Os08g0133000 protein (cDNA clone:006-311-G02, full insert sequence) (cDNA clone:J033077B10, full insert sequence),Os08g0133700 protein,Os02g0320000 protein (Fragment) Q69R46,A0A0P0XBC2,A0A0P0VI76 Q69R46_ORYSJ,A0A0P0XBC2_ORYSJ,A0A0P0VI76_ORYSJ Os08g0133000 Os08g0133000 OsJ_25947 OSJNBb0009H02.39 OSNPB_080133000,Os08g0133700 OSNPB_080133700,Os02g0320000 OSNPB_020320000 ENOG411DUBE CWINV2,CWINV4 Q1PEF8,Q8W413,A0A1I9LLD8,B6EUC9 INV2_ARATH,INV4_ARATH,A0A1I9LLD8_ARATH,B6EUC9_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV2 (EC 3.2.1.26) (Cell wall beta-fructosidase 2) (AtbetaFRUCT2) (Cell wall invertase 2) (AtcwINV2) (Sucrose hydrolase 2),Beta-fructofuranosidase, insoluble isoenzyme CWINV4 (EC 3.2.1.26) (Beta-fructofuranosidase 6) (AtFruct6) (Cell wall beta-fructosidase 4) (Cell wall invertase 4) (AtcwINV4) (Sucrose hydrolase 4),Cell wall invertase 2 The cwinv4-2 mutant has reduced invertase activity in its cell wall fraction and it does not secrete nectar. However it has normal nectary morphology. Complete loss of nectar production-C. Carter-2009 ARA:AT3G52600-MONOMER; 3.2.1.26; 3.2.1.26 66823,67413,60626,59369 Beta-fructofuranosidase, insoluble isoenzyme CWINV2 (EC 3.2.1.26) (Cell wall beta-fructosidase 2) (AtbetaFRUCT2) (Cell wall invertase 2) (AtcwINV2) (Sucrose hydrolase 2),Beta-fructofuranosidase, insoluble isoenzyme CWINV4 (EC 3.2.1.26) (Beta-fructofuranosidase 6) (AtFruct6) (Cell wall beta-fructosidase 4) (Cell wall invertase 4) (AtcwINV4) (Sucrose hydrolase 4),Cell wall invertase 2 apoplast [GO:0048046]; cell wall [GO:0005618]; sucrose alpha-glucosidase activity [GO:0004575]; carbohydrate metabolic process [GO:0005975],apoplast [GO:0048046]; cell wall [GO:0005618]; sucrose alpha-glucosidase activity [GO:0004575]; nectar secretion [GO:0071836]; starch metabolic process [GO:0005982]; sucrose catabolic process [GO:0005987],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in flowers, and seeds. {ECO:0000269|PubMed:12508063, ECO:0000269|PubMed:9951726}.,TISSUE SPECIFICITY: Expressed in flowers, and seeds, and, to a lower extent, in seedlings. {ECO:0000269|PubMed:12508063}. locus:2079944;,locus:2049445; AT3G52600,AT2G36190 beta-fructofuranosidase Beta-fructofuranosidase, insoluble isoenzyme 3 (EC 3.2.1.26) (Cell wall beta-fructosidase 3) (Invertase 3) (OsCIN3) (Sucrose hydrolase 3),Os03g0735600 protein (Os03g0735800 protein) (Fragment) Q0JDC6,C7IZD9 INV3_ORYSJ,C7IZD9_ORYSJ CIN3 INV4 Os04g0413200 LOC_Os04g33720 OJ000126_13.7 OsJ_014163 OsJ_14738,Os03g0735600 Os03g0735800 OSNPB_030735800 ENOG411DUBD WDR5B Q9SY00 WDR5B_ARATH COMPASS-like H3K4 histone methylase component WDR5B (AtWDR5B) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19567704}. R-ATH-3214841;R-ATH-3214858;R-ATH-8951664; 36303 COMPASS-like H3K4 histone methylase component WDR5B (AtWDR5B) Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2140215; AT4G02730 Eukaryotic translation initiation factor eIF2A NA NA NA NA NA NA NA ENOG411DUBJ LHCB3 Q9S7M0 CB3_ARATH Chlorophyll a-b binding protein 3, chloroplastic (Light-harvesting chlorophyll B-binding protein 3) (LHCB3*1) (Lhcb3) DISRUPTION PHENOTYPE: In koLhcb3, accumulation of LHCB1 and LHCB2 apoproteins to adjust photosystem II (PSII) (PubMed:19880802, PubMed:26562806). However, altered macrostructural arrangement of the LHCII antenna and increased rate of PSII transition from state 1 to state 2. Increased phosphorylation level of LHCII (PubMed:19880802). Reduced responsiveness of stomatal movement to abscisic acid (ABA), therefore resulting in a decrease in tolerance to drought stress (PubMed:22143917). Deceleration of the fast phase of excitation dynamics in grana cores (PubMed:26562806). {ECO:0000269|PubMed:19880802, ECO:0000269|PubMed:22143917, ECO:0000269|PubMed:26562806}. The mutant shows ABA insensitivity in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the mutant lose more water than those of the wild-type plants under dehydration condition; both young seedlings and mature plants of the mutant have lower capacity to conserve water during drought stress in comparison with wild-type plants. The ROS levels increase in the mutant in comparison with wild-type plants in both the whole leaves and in guard cells. Treatment with low concentrations of ABA reduces ROS levels in both whole leaves(1 to 10 uM ABA application) and in guard cells(5 uM ABA application) in the mutant plants. FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (PubMed:26562806). Modulates the rate of photosystem II (PSII) state transitions and influences PSII macrostructure (PubMed:19880802). Involved in PSII excitation energy transfer and charge separation during photosynthesis in thylakoids (PubMed:26562806). {ECO:0000269|PubMed:19880802, ECO:0000269|PubMed:26562806}. 28707 Chlorophyll a-b binding protein 3, chloroplastic (Light-harvesting chlorophyll B-binding protein 3) (LHCB3*1) (Lhcb3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; thylakoid membrane [GO:0042651]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; structural molecule activity [GO:0005198]; photosynthesis [GO:0015979]; photosynthesis, light harvesting in photosystem I [GO:0009768]; photosynthesis, light harvesting in photosystem II [GO:0009769]; protein-chromophore linkage [GO:0018298]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to herbicide [GO:0009635]; response to high light intensity [GO:0009644] locus:2162540; AT5G54270 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic Q6ZF30 Q6ZF30_ORYSJ Os07g0562700 OsJ_24743 OSNPB_070562700 P0406F06.32 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DUBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0723600 protein) (cDNA clone:J013119H13, full insert sequence),Os01g0547400 protein,Os02g0230025 protein Q75GU4,A0A0P0V3T0,A0A0N7KEZ2 Q75GU4_ORYSJ,A0A0P0V3T0_ORYSJ,A0A0N7KEZ2_ORYSJ LOC_Os03g51380 Os03g0723600 OJ1499_D04.14 OSNPB_030723600,Os01g0547400 OSNPB_010547400,Os02g0230025 OSNPB_020230025 ENOG411DUBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS family transcription factor source NA NA NA NA NA NA NA ENOG411DVBA ALY3,ALY4 Q94EH8,Q6NQ72,A8MQ78 THO4C_ARATH,THO4D_ARATH,A8MQ78_ARATH THO complex subunit 4C (ALYREF homolog 3) (AtALY3),THO complex subunit 4D (ALYREF homolog 4) (AtALY4),ALWAYS EARLY 4 FUNCTION: Export adapter involved in nuclear export of spliced and unspliced mRNA. {ECO:0000269|PubMed:11432957}.,FUNCTION: Export adapter involved in nuclear export of spliced and unspliced mRNA (PubMed:11432957). Plays a role in disease resistance. Mediates multiple defense responses triggered by NEP1, including stomatal closure, hypersensitive cell death (HCD) and defense-related gene expression (PubMed:24723400). {ECO:0000269|PubMed:11432957, ECO:0000269|PubMed:24723400}. RNA transport (03013),Spliceosome (03040),mRNA surveillance pathway (03015),Herpes simplex infection (05168) 31318,30435,29709 THO complex subunit 4C (ALYREF homolog 3) (AtALY3),THO complex subunit 4D (ALYREF homolog 4) (AtALY4),ALWAYS EARLY 4 nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; mRNA binding [GO:0003729]; mRNA transport [GO:0051028],nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; mRNA binding [GO:0003729]; defense response [GO:0006952]; mRNA transport [GO:0051028],RNA binding [GO:0003723] locus:2205293;,locus:2151779; AT1G66260,AT5G37720 Tho complex subunit NA NA NA NA NA NA NA ENOG411EMME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411EMMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 63 (OsC3H63),Zinc finger CCCH domain-containing protein 66 (OsC3H66),Os11g0472000 protein (Fragment) Q2R4J4,Q2QT65,A0A0P0Y2A9,A0A0P0Y253 C3H63_ORYSJ,C3H66_ORYSJ,A0A0P0Y2A9_ORYSJ,A0A0P0Y253_ORYSJ Os11g0472000 LOC_Os11g28270,Os12g0405100 LOC_Os12g21700 OsJ_35844,Os11g0472000 OSNPB_110472000 ENOG411EMMG GAE4,GAE3,GAE2 O22141,O81312,Q9LPC1 GAE4_ARATH,GAE3_ARATH,GAE2_ARATH UDP-glucuronate 4-epimerase 4 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 4) (AtUGlcAE1),UDP-glucuronate 4-epimerase 3 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 3),UDP-glucuronate 4-epimerase 2 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 2) FUNCTION: Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components.,FUNCTION: Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. {ECO:0000250}. ARA:AT2G45310-MONOMER;MetaCyc:AT2G45310-MONOMER; 5.1.3.6; 5.1.3.6 48536,47690,48133 UDP-glucuronate 4-epimerase 4 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 4) (AtUGlcAE1),UDP-glucuronate 4-epimerase 3 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 3),UDP-glucuronate 4-epimerase 2 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 2) Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; coenzyme binding [GO:0050662]; UDP-glucuronate 4-epimerase activity [GO:0050378]; carbohydrate metabolic process [GO:0005975],Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; UDP-glucuronate 4-epimerase activity [GO:0050378]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: In roots, leaves, siliques, flowers, pollen and stems. {ECO:0000269|PubMed:15225656, ECO:0000269|PubMed:15247385, ECO:0000269|PubMed:15563616}.,TISSUE SPECIFICITY: In roots, leaves, siliques, flowers, pollen and stems. {ECO:0000269|PubMed:15225656, ECO:0000269|PubMed:15247385}. locus:2050921;,locus:2126846;,locus:2025472; AT2G45310,AT4G00110,AT1G02000 UDP-glucuronate 4-epimerase NA NA NA NA NA NA NA ENOG411EMMF GAE6 Q9LIS3 GAE6_ARATH UDP-glucuronate 4-epimerase 6 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 6) (AtUGlcAE2) Short root hairs-Y. Zhu-2010 FUNCTION: Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. {ECO:0000269|PubMed:15225656}. 5.1.3.6; 5.1.3.6 50570 UDP-glucuronate 4-epimerase 6 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 6) (AtUGlcAE2) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; UDP-glucuronate 4-epimerase activity [GO:0050378]; defense response to fungus [GO:0050832]; defense response to Gram-negative bacterium [GO:0050829]; galacturonate biosynthetic process [GO:0033481] TISSUE SPECIFICITY: In roots, leaf veins, siliques, flowers, pollen and stems. {ECO:0000269|PubMed:15225656, ECO:0000269|PubMed:15247385, ECO:0000269|PubMed:15563616}. locus:2076066; AT3G23820 4-epimerase NA NA NA NA NA NA NA ENOG411EMMA MPH15.13 Q9FG30,Q9C7C3,A0A1P8BFL7,A0A1P8BFQ6,A0A1P8BFR2,A0A1I9LT79 C3H52_ARATH,C3H36_ARATH,A0A1P8BFL7_ARATH,A0A1P8BFQ6_ARATH,A0A1P8BFR2_ARATH,A0A1I9LT79_ARATH Zinc finger CCCH domain-containing protein 52 (AtC3H52),Zinc finger CCCH domain-containing protein 36 (AtC3H36),KH domain-containing protein / zinc finger (CCCH type) family protein 25368,25952,22702,17673,22979,18149 Zinc finger CCCH domain-containing protein 52 (AtC3H52),Zinc finger CCCH domain-containing protein 36 (AtC3H36),KH domain-containing protein / zinc finger (CCCH type) family protein DNA binding [GO:0003677]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],metal ion binding [GO:0046872]; RNA binding [GO:0003723] locus:2170169;,locus:2099292; AT5G06770,AT3G12130 domain--containing protein NA NA NA NA NA NA NA ENOG411EMMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) Zinc finger CCCH domain-containing protein 8 (OsC3H8) Q5ZDJ6 C3H8_ORYSJ Os01g0616400 LOC_Os01g42970 P0686E09.13-1 P0686E09.13-2 ENOG411EMMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger (CCCH Zinc finger CCCH domain-containing protein 6 (OsC3H6) (Zinc finger CCCH domain-containing protein ZFN-like 1),Os01g0258700 protein (cDNA clone:J013116H24, full insert sequence) Q5NAW2,B7F3Z8 C3H6_ORYSJ,B7F3Z8_ORYSJ Os01g0258700 LOC_Os01g15460 P0462H08.27-1 P0462H08.27-2,Os01g0258700 OSNPB_010258700 ENOG411EMMN Q8VYQ0 Q8VYQ0_ARATH Proteasome assembly chaperone (Uncharacterized protein At1g48170) 16597 Proteasome assembly chaperone (Uncharacterized protein At1g48170) proteasome complex [GO:0000502]; proteasome assembly [GO:0043248] locus:2020889; AT1G48170 NA Expressed protein (Os12g0182800 protein) (cDNA, clone: J075097P21, full insert sequence) Q2QWU1 Q2QWU1_ORYSJ Os12g0182800 LOC_Os12g08230 OSNPB_120182800 ENOG411EMMI GAE1 Q9M0B6 GAE1_ARATH UDP-glucuronate 4-epimerase 1 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 1) (AtUGlcAE3) FUNCTION: Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. {ECO:0000269|PubMed:15247385}. 5.1.3.6; 5.1.3.6 47458 UDP-glucuronate 4-epimerase 1 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 1) (AtUGlcAE3) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; UDP-glucuronate 4-epimerase activity [GO:0050378]; defense response to fungus [GO:0050832]; defense response to Gram-negative bacterium [GO:0050829]; galacturonate biosynthetic process [GO:0033481] TISSUE SPECIFICITY: In root stele, leaves, siliques, flowers, pollen and stems. {ECO:0000269|PubMed:15225656, ECO:0000269|PubMed:15247385, ECO:0000269|PubMed:15563616}. locus:2118711; AT4G30440 RmlD substrate binding domain Os02g0791500 protein (Putative nucleotide sugar epimerase) (UDP-glucuronic acid 4-epimerase isoform 2),Os06g0187200 protein (Fragment),Os02g0791500 protein (Fragment) Q6K9M5,Q0DDZ4,A0A0P0VQK6 Q6K9M5_ORYSJ,Q0DDZ4_ORYSJ,A0A0P0VQK6_ORYSJ Os02g0791500 OJ1046_F07.31 OJ1249_F12.2 OsJ_08679 OSNPB_020791500,Os06g0187200 Os06g0187200 OSNPB_060187200,Os02g0791500 OSNPB_020791500 ENOG411EMMH GAE5 Q9STI6 GAE5_ARATH UDP-glucuronate 4-epimerase 5 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 5) FUNCTION: Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. 5.1.3.6; 5.1.3.6 48165 UDP-glucuronate 4-epimerase 5 (EC 5.1.3.6) (UDP-glucuronic acid epimerase 5) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; coenzyme binding [GO:0050662]; UDP-glucuronate 4-epimerase activity [GO:0050378]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: In leaves, pollen and siliques, but not in roots or flowers. {ECO:0000269|PubMed:15225656, ECO:0000269|PubMed:15247385}. locus:2139134; AT4G12250 UDP-D-glucuronate 4-epimerase 5 NA NA NA NA NA NA NA ENOG411EMMK MYH19.120 F4KFX1 F4KFX1_ARATH GTP-binding protein 69143 GTP-binding protein mitochondrion [GO:0005739]; GTP binding [GO:0005525] locus:2178017; AT5G39960 GTPase that plays an essential role in the late steps of ribosome biogenesis (By similarity) Os01g0225200 protein C7IWA0 C7IWA0_ORYSJ Os01g0225200 Os01g0225200 OSNPB_010225200 ENOG411EMMJ emb2738 B5X565,F4J8M2 B5X565_ARATH,F4J8M2_ARATH At3g12080 (GTP-binding family protein),GTP-binding family protein Embryo defective; Globular-D. Meinke-2003 73126,64490 At3g12080 (GTP-binding family protein),GTP-binding family protein chloroplast [GO:0009507]; GTP binding [GO:0005525],GTP binding [GO:0005525] locus:2099277; AT3G12080 GTPase that plays an essential role in the late steps of ribosome biogenesis (By similarity) Os11g0638000 protein (Fragment) A0A0N7KT94 A0A0N7KT94_ORYSJ Os11g0638000 OSNPB_110638000 ENOG411EMMU NUP96 Q8LLD0 NUP96_ARATH Nuclear pore complex protein NUP96 (AtNUP96) (Nucleoporin 96) (Nucleoporin PRECOCIOUS) (Nucleoporin PRECOZ) (Protein MODIFIER OF SNC1 3) (Protein SUPPRESSOR OF AUXIN RESISTANCE 3) DISRUPTION PHENOTYPE: Pleiotropic phenotype with diverse growth defects and early flowering. {ECO:0000269|PubMed:15772285, ECO:0000269|PubMed:16751346, ECO:0000269|PubMed:21203492, ECO:0000269|PubMed:22288649}. Short roots; Few lateral roots; Thick inflorescence stems; Small floral buds and siliques; Early flowering-M. Estelle-2006 FUNCTION: Contributes to the transfer of mature mRNA from the nucleus to the cytosol. Required for both R gene-mediated and basal disease resistance. RNA export seems to play a critical role in stress responses and regulation of plant growth and development. {ECO:0000269|PubMed:15772285, ECO:0000269|PubMed:16751346, ECO:0000269|PubMed:21203492, ECO:0000269|PubMed:22288649}. MISCELLANEOUS: Unlike in mammals and yeast, NUP96 and NUP98 are not translated as a polyprotein. {ECO:0000305|PubMed:15772285}. 119154 Nuclear pore complex protein NUP96 (AtNUP96) (Nucleoporin 96) (Nucleoporin PRECOCIOUS) (Nucleoporin PRECOZ) (Protein MODIFIER OF SNC1 3) (Protein SUPPRESSOR OF AUXIN RESISTANCE 3) nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; nuclear pore cytoplasmic filaments [GO:0044614]; nucleus [GO:0005634]; nuclear localization sequence binding [GO:0008139]; nucleocytoplasmic transporter activity [GO:0005487]; porin activity [GO:0015288]; RNA binding [GO:0003723]; structural constituent of nuclear pore [GO:0017056]; defense response [GO:0006952]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; mRNA transport [GO:0051028]; posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000973]; protein import into nucleus [GO:0006606]; response to auxin [GO:0009733]; telomere tethering at nuclear periphery [GO:0034398] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16751346}. locus:2025737; AT1G80680 Nuclear protein 96 Nucleoporin family protein, putative, expressed (Os03g0172000 protein),Os03g0172000 protein (Fragment) Q10R44,A0A0P0VTQ6 Q10R44_ORYSJ,A0A0P0VTQ6_ORYSJ Os03g0172000 LOC_Os03g07580 Os03g0172000 OSNPB_030172000,Os03g0172000 OSNPB_030172000 ENOG411EMMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoporin autopeptidase Os12g0166000 protein A0A0P0Y7I3 A0A0P0Y7I3_ORYSJ Os12g0166000 OSNPB_120166000 ENOG411EMMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear protein 96 NA NA NA NA NA NA NA ENOG411EMMP PYRD Q8GWP5 RIBD_ARATH Riboflavin biosynthesis protein PYRD, chloroplastic [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (EC 3.5.4.26) (Riboflavin-specific deaminase); Inactive 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] FUNCTION: Monofunctional pyrimidine deaminase involved in the riboflavin biosynthesis pathway. Has also a reductase domain that lacks catalytically essential substrate-binding residues. {ECO:0000269|PubMed:15208317, ECO:0000269|PubMed:23150645}. MISCELLANEOUS: Unlike bacteria that have a bifunctional, two-domain RibD enzyme, plants have a monofunctional reductase and a monofunctional deaminase, each having an enzymatically inactive domain. PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 2/4. ARA:AT4G20960-MONOMER;MetaCyc:AT4G20960-MONOMER; 3.5.4.26 46674 Riboflavin biosynthesis protein PYRD, chloroplastic [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (EC 3.5.4.26) (Riboflavin-specific deaminase); Inactive 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [GO:0008835]; zinc ion binding [GO:0008270]; oxidation-reduction process [GO:0055114]; riboflavin biosynthetic process [GO:0009231]; RNA modification [GO:0009451] locus:2133074; AT4G20960 riboflavin biosynthesis protein Os03g0117200 protein (Riboflavin biosynthesis protein RibD containing protein, expressed) (cDNA clone:J023049O09, full insert sequence),Os04g0177400 protein (cDNA clone:001-116-A11, full insert sequence) Q10SM6,B7E8M5 Q10SM6_ORYSJ,B7E8M5_ORYSJ LOC_Os03g02600 Os03g0117200 OSNPB_030117200,Os04g0177400 OSNPB_040177400 ENOG411EMMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0788300 protein (Putative cell wall protein),Os03g0788300 protein Q6F3A8,A0A0N7KI65 Q6F3A8_ORYSJ,A0A0N7KI65_ORYSJ Os03g0788300 OSJNBb0024J04.18 OSNPB_030788300,Os03g0788300 OSNPB_030788300 ENOG411EMM4 Q9ZQH3 Q9ZQH3_ARATH At2g27460 (Expressed protein) (Sec23/sec24 transport family protein) (Uncharacterized protein At2g27460; F10A12.14) 82585 At2g27460 (Expressed protein) (Sec23/sec24 transport family protein) (Uncharacterized protein At2g27460; F10A12.14) COPII vesicle coat [GO:0030127]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886] locus:2038633; AT2G27460 Sec23/Sec24 zinc finger Os05g0443300 protein B9FPU5 B9FPU5_ORYSJ Os05g0443300 OsJ_18710 OSNPB_050443300 ENOG411EMM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411EMM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0568000 protein,Os07g0568000 protein (Fragment) Q84SL6,A0A0N7KNP6,A0A0P0X854 Q84SL6_ORYSJ,A0A0N7KNP6_ORYSJ,A0A0P0X854_ORYSJ OJ1092_A07.123 Os07g0568000 OsJ_24789 OSNPB_070568000,Os07g0568000 OSNPB_070568000 ENOG411EMM0 A0A1P8AW81,F4I0I5 A0A1P8AW81_ARATH,F4I0I5_ARATH Prolyl oligopeptidase family protein 89534,85872 Prolyl oligopeptidase family protein serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008] locus:2205415; AT1G69020 protease Os09g0475700 protein (Protease II-like),Os09g0475700 protein (Fragment) Q651Z3,A0A0N7KQZ6 Q651Z3_ORYSJ,A0A0N7KQZ6_ORYSJ Os09g0475700 Os09g0475700 OsJ_29741 OSNPB_090475700 P0556A05.6,Os09g0475700 OSNPB_090475700 ENOG411EMM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain Os05g0376600 protein (cDNA clone:J033014F21, full insert sequence) Q6AUP5 Q6AUP5_ORYSJ Os05g0376600 OSJNBa0007A06.10 OSNPB_050376600 ENOG411EMM2 LPA2 F4KDA6 LPA2_ARATH Protein LOW PSII ACCUMULATION 2, chloroplastic DISRUPTION PHENOTYPE: Pale-green phenotype and greatly reduced growth. Lpa2 and lpa3 double mutant is seedling lethal. {ECO:0000269|PubMed:17601825, ECO:0000269|PubMed:20605914}. Decreased Fv/Fm ratio (variable fluorescence/maximum fluorescence). Pale green; Slow growth-L. Zhang-2007 FUNCTION: Involved in assisting chlorophyll a binding protein psbC assembly within photosystem II (PSII). Works cooperatively with LPA3. {ECO:0000269|PubMed:17601825}. 20213 Protein LOW PSII ACCUMULATION 2, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:1009023492; AT5G51545 NA NA NA NA NA NA NA NA ENOG411EMM9 HUA1 Q941Q3 C3H37_ARATH Zinc finger CCCH domain-containing protein 37 (AtC3H37) (ENHANCER OF AG-4 protein 1) FUNCTION: Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. 57654 Zinc finger CCCH domain-containing protein 37 (AtC3H37) (ENHANCER OF AG-4 protein 1) cytosol [GO:0005829]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 3'-UTR binding [GO:0003730]; RNA binding [GO:0003723]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; cell fate determination [GO:0001709]; flower development [GO:0009908]; mRNA processing [GO:0006397] TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. locus:2087775; AT3G12680 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411EBWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA domain (Cdc48 subfamily) NA NA NA NA NA NA NA ENOG411E5J8 Q94AU5 Q94AU5_ARATH Transmembrane protein (Uncharacterized protein At5g19570) 14967 Transmembrane protein (Uncharacterized protein At5g19570) integral component of membrane [GO:0016021] locus:2180796; AT5G19570 transmembrane protein 234 Os05g0188300 protein (Unknow protein) (cDNA clone:J023070E02, full insert sequence) Q60D96 Q60D96_ORYSJ Os05g0188300 B1007D10.6 OsJ_17394 OSNPB_050188300 ENOG411E5J9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0196600 protein,Os07g0195500 protein Q6ZDP6,A0A0P0X457 Q6ZDP6_ORYSJ,A0A0P0X457_ORYSJ P0589E08.19 Os07g0196600 OSNPB_070196600,Os07g0195500 OSNPB_070195500 ENOG411E5J0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0126400 protein A0A0P0WRX3 A0A0P0WRX3_ORYSJ Os06g0126400 OSNPB_060126400 ENOG411E5J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: expressed protein Os01g0914000 protein (cDNA clone:J033035K05, full insert sequence) Q5N7V7 Q5N7V7_ORYSJ Os01g0914000 OSNPB_010914000 P0004D12.2 P0470A12.49 ENOG411E5J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADP-ribosylation factor family NA NA NA NA NA NA NA ENOG411E5J6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH NA NA NA NA NA NA NA ENOG411E5J7 Q9SZF8 Q9SZF8_ARATH AT4g37660/F19F18_150 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein) (Ribosomal-like protein) 18219 AT4g37660/F19F18_150 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein) (Ribosomal-like protein) integral component of membrane [GO:0016021]; mitochondrial large ribosomal subunit [GO:0005762]; peptidase activity [GO:0008233]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543]; mitochondrial transport [GO:0006839] locus:2120116; AT4G37660 ribosomal protein Os07g0626100 protein (Ribosomal protein-like) (cDNA clone:001-108-F02, full insert sequence) Q8LI41 Q8LI41_ORYSJ OJ1339_F05.119 Os07g0626100 OsJ_25195 OSNPB_070626100 ENOG411E5JH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5JI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ataxin-2 C-terminal region Os02g0135850 protein A0A0P0VEA8 A0A0P0VEA8_ORYSJ Os02g0135850 OSNPB_020135850 ENOG411E5JA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E5JC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os08g0357300 protein (Fragment) A0A0P0XFQ3 A0A0P0XFQ3_ORYSJ Os08g0357300 OSNPB_080357300 ENOG411E5JE Q1G3K2 Q1G3K2_ARATH At4g04614 20069 At4g04614 locus:1009023337; AT4G04614 NA Os06g0630300 protein (cDNA clone:002-121-F07, full insert sequence) Q67IW6 Q67IW6_ORYSJ Os06g0630300 OSJNBa0048L03.18-1 OSNPB_060630300 ENOG411E5JF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os03g0418500 protein A0A0P0VZI6 A0A0P0VZI6_ORYSJ Os03g0418500 OSNPB_030418500 ENOG411E5JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0147200 protein) (cDNA clone:001-119-E05, full insert sequence),AT3g10020/T22K18_16 (Expressed protein) (Os11g0149200 protein) Q2QXQ7,Q53PX6 Q2QXQ7_ORYSJ,Q53PX6_ORYSJ LOC_Os12g05210 Os12g0147200 OSNPB_120147200,Os11g0149200 LOC_Os11g05170 Os11g0149200 OSNPB_110149200 ENOG411E5JX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411E5JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E5JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5JQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0596200 protein (Zinc knuckle family protein, expressed) (cDNA clone:002-148-C08, full insert sequence),Os12g0435000 protein,Os03g0629001 protein,Os03g0740400 protein,Os09g0510800 protein Q10HA5,A0A0P0Y9Z8,A0A0P0W112,A0A0P0W3H4,A0A0P0XPB8 Q10HA5_ORYSJ,A0A0P0Y9Z8_ORYSJ,A0A0P0W112_ORYSJ,A0A0P0W3H4_ORYSJ,A0A0P0XPB8_ORYSJ Os03g0596200 LOC_Os03g39880 OSNPB_030596200,Os12g0435000 OSNPB_120435000,Os03g0629001 OSNPB_030629001,Os03g0740400 OSNPB_030740400,Os09g0510800 OSNPB_090510800 ENOG411E5JR Q940H5 Q940H5_ARATH Transmembrane protein 16725 Transmembrane protein integral component of membrane [GO:0016021]; plastid inner membrane [GO:0009528]; protein targeting [GO:0006605]; protein transmembrane transport [GO:0071806]; seedling development [GO:0090351] locus:2121179; AT4G38490 NA Os09g0450200 protein (cDNA clone:J013170L13, full insert sequence) Q67V49 Q67V49_ORYSJ Os09g0450200 Os09g0450200 OSNPB_090450200 P0047B10.47 ENOG411E5JS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Zinc finger protein Os03g0786400 protein (Fragment) A0A0P0W3U8 A0A0P0W3U8_ORYSJ Os03g0786400 OSNPB_030786400 ENOG411E5JT HIPP39 O03982,A0A1P8AS50,A0A1P8AS52 HIP39_ARATH,A0A1P8AS50_ARATH,A0A1P8AS52_ARATH Heavy metal-associated isoprenylated plant protein 39 (AtHIP39),Heavy metal transport/detoxification superfamily protein FUNCTION: Probable heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 19781,16151,22886 Heavy metal-associated isoprenylated plant protein 39 (AtHIP39),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2025421; AT1G01490 Heavy metal-associated domain containing protein Heavy metal-associated domain containing protein, expressed (Os10g0532300 protein) (cDNA clone:J023035E16, full insert sequence),Heavy metal-associated domain containing protein, expressed (Os12g0421000 protein),Heavy metal-associated domain containing protein, expressed (Os03g0126700 protein) (cDNA clone:J013118L13, full insert sequence) Q8LN41,Q2QSQ7,Q8S5W0 Q8LN41_ORYSJ,Q2QSQ7_ORYSJ,Q8S5W0_ORYSJ LOC_Os10g38870 Os10g0532300 OsJ_32258 OSJNBa0053C23.18 OSNPB_100532300,LOC_Os12g23280 Os12g0421000 OSNPB_120421000,LOC_Os03g03500 Os03g0126700 OJ1015F07.7 OsJ_09249 OSNPB_030126700 ENOG411E5JU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: expressed protein Os09g0494500 protein A0A0P0XNM7 A0A0P0XNM7_ORYSJ Os09g0494500 OSNPB_090494500 ENOG411E5JV POLD4 Q1H568 Q1H568_ARATH At1g09815 (Polymerase delta 4) R-ATH-110314;R-ATH-174411;R-ATH-174414;R-ATH-174417;R-ATH-174437;R-ATH-5651801;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091;R-ATH-69166;R-ATH-69183; 13824 At1g09815 (Polymerase delta 4) delta DNA polymerase complex [GO:0043625]; DNA synthesis involved in DNA repair [GO:0000731]; DNA-dependent DNA replication [GO:0006261] locus:505006114; AT1G09815 DNA polymerase Os09g0520100 protein (cDNA clone:002-156-H08, full insert sequence) Q64MB0 Q64MB0_ORYSJ Os09g0520100 Os09g0520100 OsJ_30041 OSJNOa178M01.8 OSNPB_090520100 P0669G04.6 ENOG411E5JW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain DnaJ domain containing protein (Os03g0837550 protein),DnaJ domain containing protein, expressed (DnaJ-like protein) (Os03g0560400 protein) (Putative heat shock protein) Q851M2,Q94GK7 Q851M2_ORYSJ,Q94GK7_ORYSJ OSJNBa0042I09.22 Os03g0837550 LOC_Os03g62130 OSNPB_030837550,OSJNBb0031G04.6 Os03g0560400 OSJNBa0023A13.13 LOC_Os03g36160 OsJ_11442 OSNPB_030560400 ENOG411EEU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Eukaryotic aspartyl protease family protein, expressed (Os12g0153700 protein) Q2QXK3 Q2QXK3_ORYSJ Os12g0153700 LOC_Os12g05750 OSNPB_120153700 ENOG411E1SX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant phosphoribosyltransferase C-terminal Os05g0429700 protein (Putative anthranilate phosphoribosyltransferase) (cDNA clone:J033132J08, full insert sequence),Os05g0429700 protein,Os05g0429700 protein (Fragment) Q5TKJ0,A0A0P0WMV9,A0A0P0WMQ4 Q5TKJ0_ORYSJ,A0A0P0WMV9_ORYSJ,A0A0P0WMQ4_ORYSJ Os05g0429700 OsJ_18631 OSJNBb0048I21.7 OSNPB_050429700,Os05g0429700 OSNPB_050429700 ENOG411E1SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Os03g0764100 protein (Zinc finger transcription factor ZF1) (Zinc-finger protein 1, putative, expressed),Os08g0300366 protein,Os07g0209600 protein (Fragment) Q7G7I8,A0A0P0XER8,A0A0P0X3Q8 Q7G7I8_ORYSJ,A0A0P0XER8_ORYSJ,A0A0P0X3Q8_ORYSJ LOC_Os03g55540 Os03g0764100 OSJNBa0002J24.22 OSNPB_030764100,Os08g0300366 OSNPB_080300366,Os07g0209600 OSNPB_070209600 ENOG411E1SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E1SQ ''cytochrome P450 Q9S833 Q9S833_ARATH Cytochrome P450, family 94, subfamily B, polypeptide 2 (Putative cytochrome P450) ARA:GQT-1909-MONOMER; 56460 Cytochrome P450, family 94, subfamily B, polypeptide 2 (Putative cytochrome P450) heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2078698; AT3G01900 cytochrome P450 NA NA NA NA NA NA NA ENOG411E1SP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411E1SW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 Os02g0196700 protein A0A0P0VFW7 A0A0P0VFW7_ORYSJ Os02g0196700 OSNPB_020196700 ENOG411E1SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E1SU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein NA NA NA NA NA NA NA ENOG411E1ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os06g0214850 protein (Fragment) A0A0P0WTX9 A0A0P0WTX9_ORYSJ Os06g0214850 OSNPB_060214850 ENOG411E1SK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAP10 Os06g0152700 protein Q0DEH1 Q0DEH1_ORYSJ Os06g0152700 Os06g0152700 OSNPB_060152700 ENOG411E1SJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA recombination Replication protein A 32 kDa subunit C (OsRPA32C) (OsRPA32-3) (Replication factor A protein 2C) (Replication protein A 2C) Q5Z8L1 RFA2C_ORYSJ RPA2C RPA32C Os06g0693300 LOC_Os06g47830 P0550B04.15 FUNCTION: Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions (By similarity). {ECO:0000250}. ENOG411E1SI PCMP-H64 Q9MAT2 PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840 75105 Pentatricopeptide repeat-containing protein At1g04840 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2010652; AT1G04840 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E1SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ninja-family protein NA NA NA NA NA NA NA ENOG411E1SM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E1SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBP domain Putative squamosa promoter-binding-like protein 19 Q2R3Y1 SPL19_ORYSJ SPL19 Os11g0496600 Os11g0496700 LOC_Os11g30370 LOC_Os11g30380 OsJ_032640 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. ENOG411E1SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0241000 protein A0A0P0Y133 A0A0P0Y133_ORYSJ Os11g0241000 OSNPB_110241000 ENOG411E1SA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain-containing protein NA NA NA NA NA NA NA ENOG411E1SG Q9C6Z4 Q9C6Z4_ARATH AT1G30130 protein (DUF1365 family protein) (Uncharacterized protein T2H7.7) 35773 AT1G30130 protein (DUF1365 family protein) (Uncharacterized protein T2H7.7) integral component of membrane [GO:0016021] locus:2202471; AT1G30130 Protein of unknown function (DUF1365) Os07g0153300 protein Q0D8J8 Q0D8J8_ORYSJ Os07g0153300 Os07g0153300 OSNPB_070153300 ENOG411E1SF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os03g0118400 protein,Os03g0118400 protein (Fragment),Os03g0108800 protein A0A0P0VSA1,A0A0P0VSB9,A0A0P0VS11 A0A0P0VSA1_ORYSJ,A0A0P0VSB9_ORYSJ,A0A0P0VS11_ORYSJ Os03g0118400 OSNPB_030118400,Os03g0108800 OSNPB_030108800 ENOG411E1SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0395000 protein (Putative serine/threonine protein kinase) (Serine/threonine-protein kinase NAK, putative, expressed) Q8L4T2 Q8L4T2_ORYSJ LOC_Os10g25550 Os10g0395000 OsJ_31410 OSJNAa0011L09.1 OSJNBa0011L09.11 OSNPB_100395000 ENOG411E1SD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411E1S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tripartite motif containing NA NA NA NA NA NA NA ENOG411E1S8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein NA NA NA NA NA NA NA ENOG411E1S3 PUB50 Q9FGD7,A0A1P8BEU3 PUB50_ARATH,A0A1P8BEU3_ARATH Putative U-box domain-containing protein 50 (EC 2.3.2.27) (Plant U-box protein 50) (RING-type E3 ubiquitin transferase PUB50),U-box domain-containing protein kinase family protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 87314,91317 Putative U-box domain-containing protein 50 (EC 2.3.2.27) (Plant U-box protein 50) (RING-type E3 ubiquitin transferase PUB50),U-box domain-containing protein kinase family protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ubiquitin-protein transferase activity [GO:0004842] AT5G65500 AT5G65500 (E 0.0) ATP binding kinase protein kinase protein serine threonine kinase protein tyrosine kinase ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411E1S2 EMB2758 O81767,A0A1P8B8P9 PP348_ARATH,A0A1P8B8P9_ARATH Pentatricopeptide repeat-containing protein At4g33990 (Protein EMBRYO DEFECTIVE 2758),Tetratricopeptide repeat (TPR)-like superfamily protein Embryo defective; Globular-D. Meinke-2004 92414,91650 Pentatricopeptide repeat-containing protein At4g33990 (Protein EMBRYO DEFECTIVE 2758),Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451],zinc ion binding [GO:0008270] locus:2118964; AT4G33990 Pentatricopeptide repeat-containing protein Os03g0396200 protein (Fragment) A0A0P0VZ90 A0A0P0VZ90_ORYSJ Os03g0396200 OSNPB_030396200 ENOG411E1S1 PCMP-E66 Q9C507 PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial 87490 Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2007116; AT1G69350 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E1S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0535800 protein (Receptor-like protein kinase-like) (cDNA clone:002-166-F11, full insert sequence) Q69W20 Q69W20_ORYSJ OJ1058_A12.113 Os07g0535800 OSNPB_070535800 ENOG411E1S7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II Os09g0433900 protein (Putative alanine aminotransferase) (cDNA clone:002-125-F01, full insert sequence) Q69PH8 Q69PH8_ORYSJ Os09g0433900 OJ1081_G10.17 OSNPB_090433900 ENOG411E1S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRA Os12g0128450 protein,Os11g0131600 protein A0A0P0Y6F9,A0A0P0XYC1 A0A0P0Y6F9_ORYSJ,A0A0P0XYC1_ORYSJ Os12g0128450 OSNPB_120128450,Os11g0131600 OSNPB_110131600 ENOG411E1S5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ankyrin Repeat NA NA NA NA NA NA NA ENOG411E1S4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411DSE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fumarase C-terminus NA NA NA NA NA NA NA ENOG411DSE5 SEC13A,SEC13B Q9SRI1,O64740 SC13A_ARATH,SC13B_ARATH Protein transport protein SEC13 homolog A (SEC13-like protein A),Protein transport protein SEC13 homolog B (SEC13-like protein B) FUNCTION: Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000305|PubMed:24280388}. R-ATH-204005; 32631,32642 Protein transport protein SEC13 homolog A (SEC13-like protein A),Protein transport protein SEC13 homolog B (SEC13-like protein B) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; nucleolus [GO:0005730]; mRNA transport [GO:0051028]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2100267;,locus:2045648; AT3G01340,AT2G30050 protein SEC13 homolog Os02g0135800 protein (Sec13p) (cDNA clone:001-038-G01, full insert sequence) (cDNA clone:J023039H16, full insert sequence),Os02g0135800 protein (Fragment) Q6Z0Y9,A0A0P0VEE0 Q6Z0Y9_ORYSJ,A0A0P0VEE0_ORYSJ Os02g0135800 Os02g0135800 OsJ_05292 OSJNBa0081C13.10 OSNPB_020135800,Os02g0135800 OSNPB_020135800 ENOG411DSE9 Q9FLD8 PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic Embryo defective-D. Meinke-2011 78273 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2178037; AT5G39980 Pentatricopeptide repeat-containing protein Os01g0833000 protein (Putative PPR protein),Os02g0315200 protein (Fragment) Q8LPZ1,A0A0P0VI82 Q8LPZ1_ORYSJ,A0A0P0VI82_ORYSJ Os01g0833000 OSNPB_010833000 P0460C04.13,Os02g0315200 OSNPB_020315200 ENOG411DSEY PMR5 Q9LUZ6 TBL44_ARATH Protein PMR5 (Powdery mildew resistance protein 5) (Protein trichome birefringence-like 44) Short, rounded leaves; Elevated pectin and uronic acid levels in cell wall; Resistant to fungal infection-S. Sommerville-2004 FUNCTION: Involved in pectin methyl esterification or O-acetylation. Required for nonhost resistance (NHR) during plant-microbe interactions. Plants mutated in PMR5 are resistant to powdery mildew species. {ECO:0000269|PubMed:15584961, ECO:0000269|PubMed:19810803, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 44833 Protein PMR5 (Powdery mildew resistance protein 5) (Protein trichome birefringence-like 44) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554]; defense response [GO:0006952]; response to fungus [GO:0009620] TISSUE SPECIFICITY: Expressed in flowers, siliques, stems and leaves. {ECO:0000269|PubMed:15584961}. locus:2178813; AT5G58600 Pfam:DUF231 Expressed protein (Os03g0290900 protein) (cDNA clone:001-118-H07, full insert sequence) Q10MX5 Q10MX5_ORYSJ LOC_Os03g18110 Os03g0290900 OsJ_10450 OSNPB_030290900 ENOG411DSEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os07g0596900 protein (Putative zinc finger transcription factor WRKY) (WRKY6) Q84ZK2 Q84ZK2_ORYSJ P0453E05.117 Os07g0596900 OSNPB_070596900 ENOG411DSEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os01g0568400 protein,Os10g0136400 protein A0A0P0V497,A0A0P0XSB2 A0A0P0V497_ORYSJ,A0A0P0XSB2_ORYSJ Os01g0568400 OSNPB_010568400,Os10g0136400 OSNPB_100136400 ENOG411EKTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411DW1H Q9SJ13 Q9SJ13_ARATH At2g21860/F7D8.18 (Expressed protein) (Violaxanthin de-epoxidase-like protein) 59288 At2g21860/F7D8.18 (Expressed protein) (Violaxanthin de-epoxidase-like protein) magnesium chelatase activity [GO:0016851] locus:2052454; AT2G21860 Inherit from euNOG: Violaxanthin Os01g0716400 protein (Violaxanthin de-epoxidase-related-like) (cDNA clone:J013088O12, full insert sequence) Q5JMC7 Q5JMC7_ORYSJ Os01g0716400 OsJ_03254 OSNPB_010716400 P0683B11.13 ENOG411EBS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBS6 F9D12.8 O81493,Q6RF45,Q93Z83,F4IV56,A0A1P8AYX3,A0A1P8BA53,A0A1P8AZ34,F4JZS5,F4IV58,F4IV59,A8MR02,F4JZS4,F4JZS7 O81493_ARATH,Q6RF45_ARATH,Q93Z83_ARATH,F4IV56_ARATH,A0A1P8AYX3_ARATH,A0A1P8BA53_ARATH,A0A1P8AZ34_ARATH,F4JZS5_ARATH,F4IV58_ARATH,F4IV59_ARATH,A8MR02_ARATH,F4JZS4_ARATH,F4JZS7_ARATH F9D12.8 protein (TRAF-like family protein) (Uncharacterized protein At5g26260),TRAF-like family protein,At5g26280/T19G15_130 (TRAF-like family protein) 39826,44405,39446,33876,33257,41632,41014,39391,38976,44418,36875,37964,39999 F9D12.8 protein (TRAF-like family protein) (Uncharacterized protein At5g26260),TRAF-like family protein,At5g26280/T19G15_130 (TRAF-like family protein) chloroplast [GO:0009507]; plasmodesma [GO:0009506],membrane [GO:0016020]; plasmodesma [GO:0009506],anchored component of membrane [GO:0031225],mitochondrion [GO:0005739] locus:2179744;,locus:2055998;,locus:2179699;,locus:2151054;,locus:2056008;,locus:2151049;,locus:2151064; AT5G26260,AT2G04170,AT5G26280,AT5G26300,AT2G04190,AT5G26290,AT5G26320 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EBSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NB-ARC domain containing protein, expressed (Os12g0205500 protein) (cDNA clone:J023136B13, full insert sequence) Q2QW66 Q2QW66_ORYSJ LOC_Os12g10410 Os12g0205500 OsJ_35550 OSNPB_120205500 ENOG411EBSY Q9S772 GLT3_ARATH Germin-like protein subfamily T member 3 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 24127 Germin-like protein subfamily T member 3 apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2027232; AT1G74820 Cupin domain NA NA NA NA NA NA NA ENOG411EBSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OJ000223_09.12 protein (Os04g0486300 protein) (cDNA clone:001-112-H10, full insert sequence) Q7X8M6 Q7X8M6_ORYSJ OJ000223_09.12 Os04g0486300 OSNPB_040486300 ENOG411EBSU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance protein RPP13-like NA NA NA NA NA NA NA ENOG411EBSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HI0933-like protein NA NA NA NA NA NA NA ENOG411EBSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os02g0574100 protein (Putative monosaccharide transporter 1) (cDNA clone:J013136H14, full insert sequence) Q6YXB7 Q6YXB7_ORYSJ Os02g0574100 Os02g0574100 OsJ_07229 OSJNBb0046L23.18 OSNPB_020574100 P0703B01.2 ENOG411EBSP A0A1P8B2G4,A0A1P8B2I2,F4IRX2 A0A1P8B2G4_ARATH,A0A1P8B2I2_ARATH,F4IRX2_ARATH Uncharacterized protein 63913,55240,60590 Uncharacterized protein chloroplast envelope [GO:0009941]; plasma membrane [GO:0005886] locus:2065644; AT2G37930 Domain of unknown function (DUF3527) NA NA NA NA NA NA NA ENOG411EBSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA T-complex protein 11 NA NA NA NA NA NA NA ENOG411EBSR IWS2 O49413 IWS2_ARATH Protein IWS1 homolog 2 (AtIWS2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20139304}. FUNCTION: Transcription factor involved in RNA polymerase II (RNAPII) transcription regulation. Involved in transcription elongation. May function at post-recruitment and elongation steps of transcription. {ECO:0000250|UniProtKB:F4ICK8}. 47095 Protein IWS1 homolog 2 (AtIWS2) nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2117199; AT4G19000 TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411EKTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR/MLP1/MLP2-like protein Os02g0741500 protein (Translocated promoter region-like),Os02g0741400 protein (Fragment) Q6Z7R9,A0A0P0VPM8 Q6Z7R9_ORYSJ,A0A0P0VPM8_ORYSJ Os02g0741500 OSNPB_020741500 P0516G10.28 P0585G03.6,Os02g0741400 OSNPB_020741400 ENOG411EBSM PMEI11 Q9STY5 PMI11_ARATH Pectinesterase inhibitor 11 (Pectin methylesterase inhibitor 11) (AtPMEI11) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have enhanced susceptibility to infection by the necrotrophic pathogen Botrytis cinerea. {ECO:0000269|PubMed:28082716}. FUNCTION: Pectin methylesterase (PME) inhibitor involved in the maintenance of cell wall integrity in response to necrotrophic pathogens. Modulates PME activity and pectin methylesterification during infection by Botrytis cinerea and contributes to resistance against the pathogen. {ECO:0000269|PubMed:28082716}. 22226 Pectinesterase inhibitor 11 (Pectin methylesterase inhibitor 11) (AtPMEI11) apoplast [GO:0048046]; enzyme inhibitor activity [GO:0004857]; pectinesterase inhibitor activity [GO:0046910]; plant-type cell wall organization or biogenesis [GO:0071669] locus:2099545; AT3G47380 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EBSN F23O10.17,T22E16.200 Q9LDI9,Q9M2S5,F4I0L1 Q9LDI9_ARATH,Q9M2S5_ARATH,F4I0L1_ARATH At1g69250 (F4N2.20) (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Putative RNA-binding protein; 63745-61607),Nuclear transport factor 2 (NTF2) family protein (Uncharacterized protein T22E16.200),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein 46675,38116,42914 At1g69250 (F4N2.20) (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Putative RNA-binding protein; 63745-61607),Nuclear transport factor 2 (NTF2) family protein (Uncharacterized protein T22E16.200),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; transport [GO:0006810],intracellular [GO:0005622]; nucleic acid binding [GO:0003676]; transport [GO:0006810] locus:2026423;,locus:2099926; AT1G69250,AT3G55540 Nuclear transport factor 2 (NTF2) domain NA NA NA NA NA NA NA ENOG411EBSH NUDT27 Q9FNH4 NUD27_ARATH Nudix hydrolase 27, chloroplastic (AtNUDT27) (EC 3.6.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) as substrates. {ECO:0000269|PubMed:18815383}. ARA:AT5G06340-MONOMER; 3.6.1.- 25864 Nudix hydrolase 27, chloroplastic (AtNUDT27) (EC 3.6.1.-) chloroplast [GO:0009507]; bis(5'-adenosyl)-pentaphosphatase activity [GO:0034432]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2164220; AT5G06340 NUDIX domain NA NA NA NA NA NA NA ENOG411EBSI F4JG98 F4JG98_ARATH Cystatin/monellin superfamily protein 30295 Cystatin/monellin superfamily protein locus:504955238; AT4G03565 NA NA NA NA NA NA NA NA ENOG411EBSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase family NA NA NA NA NA NA NA ENOG411EE82 ABCB23,ABCB24 Q9FUT3,Q9M0G9 AB23B_ARATH,AB24B_ARATH ABC transporter B family member 23, mitochondrial (ABC transporter ABCB.23) (AtABCB23) (ABC transporter of the mitochondrion 1) (AtATM1) (Iron-sulfur clusters transporter ATM1) (Protein STARIK 2),ABC transporter B family member 24, mitochondrial (ABC transporter ABCB.24) (AtABCB24) (ABC transporter of the mitochondrion 2) (AtATM2) (Iron-sulfur clusters transporter ATM2) (Protein STARIK 3) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19710232}. FUNCTION: Performs an essential function in the generation of cytoplasmic iron-sulfur proteins by mediating export of Fe/S cluster precursors synthesized by NFS1 and other mitochondrial proteins. Not involved in the export of cyclic pyranopterin monophosphate (cPMP) from mitochondria into the cytosol. {ECO:0000269|PubMed:11158531, ECO:0000269|PubMed:20164445}.,FUNCTION: Performs an essential function in the generation of cytoplasmic iron-sulfur proteins by mediating export of Fe/S cluster precursors synthesized by NFS1 and other mitochondrial proteins (By similarity). Not involved in the export of cyclic pyranopterin monophosphate (cPMP) from mitochondria to the cytosol. {ECO:0000250, ECO:0000269|PubMed:20164445}. ARA:AT4G28630-MONOMER;,ARA:AT4G28620-MONOMER; R-ATH-1369007; 75469,76050 ABC transporter B family member 23, mitochondrial (ABC transporter ABCB.23) (AtABCB23) (ABC transporter of the mitochondrion 1) (AtATM1) (Iron-sulfur clusters transporter ATM1) (Protein STARIK 2),ABC transporter B family member 24, mitochondrial (ABC transporter ABCB.24) (AtABCB24) (ABC transporter of the mitochondrion 2) (AtATM2) (Iron-sulfur clusters transporter ATM2) (Protein STARIK 3) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; cellular iron ion homeostasis [GO:0006879]; ion transport [GO:0006811]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17517886}.,TISSUE SPECIFICITY: Mostly expressed at low levels in roots and flowers. {ECO:0000269|PubMed:17517886}. locus:2139875;,locus:2139870; AT4G28630,AT4G28620 ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411EE83 FRO1,FRO3 Q9LMM2,F4I4K7,A0A1P8ATB2,A0A1P8ATD5 FRO1_ARATH,FRO3_ARATH,A0A1P8ATB2_ARATH,A0A1P8ATD5_ARATH Probable ferric reduction oxidase 1 (AtFRO1) (EC 1.16.1.7) (Ferric-chelate reductase 1),Ferric reduction oxidase 3, mitochondrial (AtFRO3) (EC 1.16.1.7) (Ferric-chelate reductase 3),Ferric reduction oxidase 3 FUNCTION: Ferric chelate reductase involved in iron reduction in roots (By similarity). May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. {ECO:0000250}.,FUNCTION: Ferric chelate reductase involved in iron reduction in roots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. {ECO:0000269|PubMed:16006655}. MISCELLANEOUS: It is not clear whether or not FRO3 functions in iron import to mitochondria or is involved in iron efflux to the cytosol. ARA:AT1G01590-MONOMER; 1.16.1.7 79600,80934,77769,78259 Probable ferric reduction oxidase 1 (AtFRO1) (EC 1.16.1.7) (Ferric-chelate reductase 1),Ferric reduction oxidase 3, mitochondrial (AtFRO3) (EC 1.16.1.7) (Ferric-chelate reductase 3),Ferric reduction oxidase 3 integral component of membrane [GO:0016021]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in siliques. Detected in roots. {ECO:0000269|PubMed:10067892, ECO:0000269|PubMed:16362328}.,TISSUE SPECIFICITY: Expressed in root steele. Detected in shoots, leaves, stems, siliques, flowers and cotyledons. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:16362328, ECO:0000269|PubMed:18436742}. locus:2025366;,locus:2017789; AT1G01590,AT1G23020 Ferric reductase like transmembrane component NA NA NA NA NA NA NA ENOG411EE80 A0A1P8B4K0 A0A1P8B4K0_ARATH Fringe-like protein (Fragment) 53657 Fringe-like protein (Fragment) integral component of membrane [GO:0016021] Fringe-related protein NA NA NA NA NA NA NA ENOG411EE81 DIR7 Q9LID5 DIR7_ARATH Dirigent protein 7 (AtDIR7) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 20429 Dirigent protein 7 (AtDIR7) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2091521; AT3G13650 Disease resistance response NA NA NA NA NA NA NA ENOG411EE86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411EE85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os03g0695100 protein A0A0P0W1P4 A0A0P0W1P4_ORYSJ Os03g0695100 OSNPB_030695100 ENOG411EE89 WOX8,MCL19.5 Q6X7J5,F4KG06 WOX8_ARATH,F4KG06_ARATH WUSCHEL-related homeobox 8 (Protein STIMPY-LIKE),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with WOX9 (PubMed:17706632). Wox8 and wox9 double mutants are embryo lethal, with embryos disrupted as early as the first cell division in the embryo proper (PubMed:17706632). {ECO:0000269|PubMed:17706632}. FUNCTION: Probable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}. 36312,13129 WUSCHEL-related homeobox 8 (Protein STIMPY-LIKE),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon boundary formation [GO:0090451]; cotyledon development [GO:0048825]; embryo development ending in seed dormancy [GO:0009793]; establishment of cell polarity [GO:0030010]; positive regulation of cell proliferation [GO:0008284]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; vacuole [GO:0005773]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac (PubMed:14711878). After fertilization, it is expressed in the zygote (PubMed:14711878). After the first division of the zygote, it is detected exclusively in the basal daughter cell, while WOX2 is expressed in the apical daughter cell (PubMed:14711878). Through the 16-cell stage, it is expressed in all descendants of the basal daughter, the developing suspensor and the hypophyseal cell (PubMed:14711878). After the hypophysis had divided, expression stops in descendants, but remains present in the extra embryonic suspensor (PubMed:14711878). Moreover it is found in the cellularized endosperm of the micropylar region during the globular and heart stages of embryogenesis (PubMed:14711878). Not expressed later in embryogenesis or in postembryonic stages (PubMed:14711878). Activated in the zygote after fertilization (PubMed:21316593). {ECO:0000269|PubMed:14711878, ECO:0000269|PubMed:21316593}. TISSUE SPECIFICITY: Expressed only in the egg cell (PubMed:21316593). Not detected in the pollen tube (PubMed:21316593). Expressed in the zygote, the basal cell, and later the suspensor (PubMed:21802295). Expressed in all suspensor cells, except the hypophysis, and in the embryo surrounding region (ESR) endosperm cells (PubMed:22427333). Strongly expressed in the suspensor cells, with a weak expression also detected throughout the developing embryo (PubMed:22827849). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:21802295, ECO:0000269|PubMed:22427333, ECO:0000269|PubMed:22827849}. locus:2161353;,locus:2161388; AT5G45980,AT5G46010 Homeobox domain NA NA NA NA NA NA NA ENOG411EE8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PbH1 NA NA NA NA NA NA NA ENOG411EE8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated domain NA NA NA NA NA NA NA ENOG411EE8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transporting ATPase C-terminus Probable calcium-transporting ATPase 8, plasma membrane-type (OsACA8) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8),Probable calcium-transporting ATPase 9, plasma membrane-type (OsACA9) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) Q2RAS0,Q2QY12 ACA8_ORYSJ,ACA9_ORYSJ ACA8 Os11g0140400 LOC_Os11g04460,ACA9 Os12g0136900 LOC_Os12g04220 OsJ_35157 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles. {ECO:0000250}. ENOG411EE8F Q9LF52 Q9LF52_ARATH Glycosyl hydrolase superfamily protein (Uncharacterized protein K3M16_70) 59551 Glycosyl hydrolase superfamily protein (Uncharacterized protein K3M16_70) hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2157482; AT5G17500 (glycosyl hydrolase family 5) protein NA NA NA NA NA NA NA ENOG411EE8N MYB53 Q9FJP2 Q9FJP2_ARATH MYB transcription factor (Myb domain protein 53) (Transcription factor-like protein) FUNCTION: Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. 35136 MYB transcription factor (Myb domain protein 53) (Transcription factor-like protein) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2171845; AT5G65230 myb domain protein 53 NA NA NA NA NA NA NA ENOG411EE8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA spermidine NA NA NA NA NA NA NA ENOG411EE8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE8P Q9C627,Q9C629,Q9C628,F4HRE9 FB36_ARATH,FB35_ARATH,Q9C628_ARATH,F4HRE9_ARATH Putative F-box protein At1g46984,Putative F-box protein At1g46840,F-box associated ubiquitination effector family protein (Uncharacterized protein F2G19.20),F-box associated ubiquitination effector family protein 43130,55411,36256,25555 Putative F-box protein At1g46984,Putative F-box protein At1g46840,F-box associated ubiquitination effector family protein (Uncharacterized protein F2G19.20),F-box associated ubiquitination effector family protein locus:2825797;,locus:2825822;,locus:2825787; AT1G46984,AT1G46840,AT1G46912 F-box associated domain NA NA NA NA NA NA NA ENOG411EE8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE8W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family NA NA NA NA NA NA NA ENOG411EE8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EE8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EE8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc NA NA NA NA NA NA NA ENOG411EEZX MCO15.16 Q9FLP2 Q9FLP2_ARATH At5g55210 18528 At5g55210 locus:2161630; AT5G55210 NA NA NA NA NA NA NA NA ENOG411DTD0 Q0WL28,B3H6L4 Q0WL28_ARATH,B3H6L4_ARATH Ubiquitin system component Cue protein (Uncharacterized protein At1g27750),Ubiquitin system component Cue protein 72695,96422 Ubiquitin system component Cue protein (Uncharacterized protein At1g27750),Ubiquitin system component Cue protein locus:4010713480; AT1G27752 CUE domain containing protein CUE domain containing protein, expressed (Os03g0205000 protein) (cDNA clone:J023025N13, full insert sequence) Q10Q92 Q10Q92_ORYSJ Os03g0205000 LOC_Os03g10750 Os03g0205000 OSNPB_030205000 ENOG411DTD1 Q8GYX5,Q9FHB7 Q8GYX5_ARATH,Q9FHB7_ARATH At4g25620 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At4g25620/M7J2_10),At5g52430 (Hydroxyproline-rich glycoprotein family protein) (Similarity to unknown protein) (Uncharacterized protein At5g52430) 47718,46833 At4g25620 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At4g25620/M7J2_10),At5g52430 (Hydroxyproline-rich glycoprotein family protein) (Similarity to unknown protein) (Uncharacterized protein At5g52430) locus:2131819;,locus:2156712; AT4G25620,AT5G52430 Hydroxyproline-rich glycoprotein family protein Hydroxyproline-rich glycoprotein-like (Os02g0822000 protein) (cDNA clone:001-046-H02, full insert sequence) (cDNA clone:J023093H07, full insert sequence),Os02g0822000 protein (Fragment) Q6K6Z8,A0A0P0VRC4 Q6K6Z8_ORYSJ,A0A0P0VRC4_ORYSJ P0474F11.28-1 OJ1119_A01.13-1 Os02g0822000 OsJ_08919 OSNPB_020822000,Os02g0822000 OSNPB_020822000 ENOG411DTD2 PCMP-E98 Q3E9N1 PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952, mitochondrial 85828 Pentatricopeptide repeat-containing protein At4g39952, mitochondrial chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425] locus:504955244; AT4G39952 Pentatricopeptide repeat-containing protein OSJNBa0060P14.4 protein (Os04g0463800 protein) Q7XMZ6 Q7XMZ6_ORYSJ Os04g0463800 Os04g0463800 OSJNBa0060P14.4 OSNPB_040463800 ENOG411DTD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os09g0485600 protein (Fragment),Os09g0485500 protein (cDNA clone:002-172-H09, full insert sequence),Os03g0415351 protein Q0J0S3,Q0J0S4,A0A0P0VYQ9 Q0J0S3_ORYSJ,Q0J0S4_ORYSJ,A0A0P0VYQ9_ORYSJ Os09g0485600 OSNPB_090485600,Os09g0485500 Os09g0485500 OSNPB_090485500,Os03g0415351 OSNPB_030415351 ENOG411DTD5 TRM17,TRM20 Q9SK77,Q949M4 Q9SK77_ARATH,Q949M4_ARATH GPI-anchored adhesin-like protein, putative (DUF3741) (Uncharacterized protein At2g20240),Methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) (Uncharacterized protein At4g28760) 79599,102904 GPI-anchored adhesin-like protein, putative (DUF3741) (Uncharacterized protein At2g20240),Methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) (Uncharacterized protein At4g28760) locus:2038982;,locus:2117823; AT2G20240,AT4G28760 Protein of unknown function (DUF3741) Expressed protein (Os03g0143700 protein),Os04g0506900 protein,Os04g0506900 protein (Fragment),Os03g0143700 protein (Fragment) Q10RW7,B9FG16,A0A0P0WC57,A0A0P0VSY7 Q10RW7_ORYSJ,B9FG16_ORYSJ,A0A0P0WC57_ORYSJ,A0A0P0VSY7_ORYSJ Os03g0143700 LOC_Os03g04990 Os03g0143700 OsJ_17015 OSNPB_030143700,Os04g0506900 OsJ_15391 OSNPB_040506900,Os04g0506900 OSNPB_040506900,Os03g0143700 OSNPB_030143700 ENOG411DTD6 F4JTN0,F4JTN1,F4I9G5 F4JTN0_ARATH,F4JTN1_ARATH,F4I9G5_ARATH Patched family protein R-ATH-8963678;R-ATH-8964038; 139971,142677,138285 Patched family protein integral component of membrane [GO:0016021]; lipid transporter activity [GO:0005319],integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; lipid transporter activity [GO:0005319]; pollen tube development [GO:0048868]; regulation of sphingolipid biosynthetic process [GO:0090153],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; lipid transporter activity [GO:0005319] locus:2121748;,locus:2035878; AT4G38350,AT1G42470 Niemann-Pick C1 Os04g0563801 protein A0A0P0WDF1 A0A0P0WDF1_ORYSJ Os04g0563801 OSNPB_040563801 ENOG411DTD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1637) Os08g0480400 protein (cDNA, clone: J065214F15, full insert sequence) Q6Z242 Q6Z242_ORYSJ Os08g0480400 OJ1113_A10.35 OsJ_27690 OSJNBb0092C08.5 OSNPB_080480400 ENOG411DTD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain Glutathione S-transferase GSTU6, putative, expressed (Os10g0528200 protein) (Putative glutathione S-transferase) (cDNA, clone: J075074N23, full insert sequence),Glutathione S-transferase GSTU6, putative, expressed (Os10g0529300 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU18) (cDNA clone:001-208-G09, full insert sequence) (cDNA clone:006-201-A11, full insert sequence) (cDNA clone:006-207-H12, full insert sequence),Glutathione S-transferase GSTU6, putative, expressed (Os10g0528400 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU3),Glutathione S-transferase GSTU6, putative, expressed (Os10g0528900 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU14) (cDNA clone:006-201-C07, full insert sequence) Q8S703,Q945W2,Q9FUE3,Q945W4 Q8S703_ORYSJ,Q945W2_ORYSJ,Q9FUE3_ORYSJ,Q945W4_ORYSJ Os10g0528200 LOC_Os10g38489 Os10g0528200 OsJ_32230 OSJNBa0034L04.24 OSJNBb0038A07.37 OSNPB_100528200,LOC_Os10g38580 Os10g0529300 OSJNBa0034L04.5 OSJNBb0038A07.8 OSNPB_100529300,Os10g0528400 LOC_Os10g38489 Os10g0528400 OsJ_32232 OSJNBa0034L04.7 OSJNBb0038A07.10 OSNPB_100528400,Os10g0528900 LOC_Os10g38540 Os10g0528900 OsJ_32233 OSJNBa0034L04.6 OSJNBb0038A07.9 OSNPB_100528900 ENOG411DTDA APD9 Q9SD12,Q9FKX4,Q5PNS9,A0A1P8BET0 P2C46_ARATH,P2C79_ARATH,P2C64_ARATH,A0A1P8BET0_ARATH Probable protein phosphatase 2C 46 (AtPP2C46) (EC 3.1.3.16),Probable protein phosphatase 2C 79 (AtPP2C79) (EC 3.1.3.16),Probable protein phosphatase 2C 64 (AtPP2C64) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 42179,42963,44123,31354 Probable protein phosphatase 2C 46 (AtPP2C46) (EC 3.1.3.16),Probable protein phosphatase 2C 79 (AtPP2C79) (EC 3.1.3.16),Probable protein phosphatase 2C 64 (AtPP2C64) (EC 3.1.3.16),Protein phosphatase 2C family protein plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2081770;,locus:2156877;,locus:2121234; AT3G51370,AT5G66080,AT4G38520 phosphatase 2C Probable protein phosphatase 2C 60 (OsPP2C60) (EC 3.1.3.16),Os06g0717800 protein (Fragment) Q5Z8P0,A0A0N7KMR1 P2C60_ORYSJ,A0A0N7KMR1_ORYSJ Os06g0717800 LOC_Os06g50380 OJ1540_H01.4 OsJ_22677 P0541C02.17,Os06g0717800 OSNPB_060717800 ENOG411DZ41 PRA1B5 Q9M012,F4JGU4 PR1B5_ARATH,F4JGU4_ARATH PRA1 family protein B5 (AtPRA1.B5),PRA1 family protein FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}.,FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. 23814,13315 PRA1 family protein B5 (AtPRA1.B5),PRA1 family protein endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; transport [GO:0006810] TISSUE SPECIFICITY: Expressed in roots, lateral roots, lateral root caps, columella cells, leaves, and shoot apex. {ECO:0000269|PubMed:18583532}. locus:2149815;,locus:4515103315; AT5G01640,AT4G00005 PRA1 family protein PRA1 family protein Q2RBL4,Q2QYS7 Q2RBL4_ORYSJ,Q2QYS7_ORYSJ Os11g0107600 LOC_Os11g01610 OSNPB_110107600,Os12g0107600 LOC_Os12g01690 Os12g0107600 OSNPB_120107600 FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. ENOG411DTDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein NA NA NA NA NA NA NA ENOG411DTDD PROT2,PROT3,PROT1,ProT3 P92962,Q9SJP9,P92961,A0A1P8B085,A0A1P8AZ88 PROT2_ARATH,PROT3_ARATH,PROT1_ARATH,A0A1P8B085_ARATH,A0A1P8AZ88_ARATH Proline transporter 2 (AtPROT2),Proline transporter 3 (AtPROT3),Proline transporter 1 (AtPROT1),Proline transporter 1,Proline transporter 3 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants grown with exogenous high concentrations of D-proline show reduced inhibition of root growth. {ECO:0000269|PubMed:20959625}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20959625}. FUNCTION: Proline transporter that mediates proline and glycine betaine transport. May be involved in the uptake of compatible solutes from the soil into the roots, or in retrieval of apoplastic amino acids delivered to the roots via the phloem. May be involved in delivery of proline to wounding sites. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline. {ECO:0000269|PubMed:10359089, ECO:0000269|PubMed:15618414, ECO:0000269|PubMed:20959625, ECO:0000269|PubMed:8776904}.,FUNCTION: Proline transporter that mediates proline and glycine betaine transport. When expressed in a heterologous system (yeast), imports L-proline, glycine betaine and GABA across the plasma membrane. {ECO:0000269|PubMed:15618414}.,FUNCTION: Proline transporter that mediates proline and glycine betaine transport. May be involved in long-distance transport of proline and required for phloem loading, retrieval of proline leaking from the phloem, or in xylem-to-phloem transfer. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline. {ECO:0000269|PubMed:10359089, ECO:0000269|PubMed:15618414, ECO:0000269|PubMed:20959625, ECO:0000269|PubMed:8776904}. MISCELLANEOUS: Treatment with toxic concentrations of proline reduces shoot growth and root elongation in wild-type plants, while plant lines over-expressing PROT2 stop growing shortly after unfolding of cotyledons. {ECO:0000305|PubMed:20959625}.,MISCELLANEOUS: Treatment with toxic concentrations of proline reduces shoot growth and root elongation in wild-type plants, while plant lines over-expressing PROT1 stop growing shortly after unfolding of cotyledons. {ECO:0000305|PubMed:20959625}. 48086,47651,48456,42141,36011 Proline transporter 2 (AtPROT2),Proline transporter 3 (AtPROT3),Proline transporter 1 (AtPROT1),Proline transporter 1,Proline transporter 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; L-proline transmembrane transporter activity [GO:0015193]; proline transport [GO:0015824],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in epidermal and cortex cells of roots. Expressed in stipules. {ECO:0000269|PubMed:15618414, ECO:0000269|PubMed:8776904}.,TISSUE SPECIFICITY: Expressed in epidermal cells of leaves, sepals and petals. {ECO:0000269|PubMed:15618414}.,TISSUE SPECIFICITY: Expressed in vascular tissues of roots, leaves, stems, sepals, petals, stamen and siliques. Expressed in pollen. {ECO:0000269|PubMed:15618414, ECO:0000269|PubMed:20959625, ECO:0000269|PubMed:8776904}. locus:2078981;,locus:2044835;,locus:2061156; AT3G55740,AT2G36590,AT2G39890 Proline transporter Proline transporter 1 (OsPROT),Probable proline transporter 2,Os03g0644400 protein (Fragment),Os07g0100800 protein (Fragment) Q60DN5,Q69LA1,A0A0P0W1G6,A0A0P0X1E9 PROT1_ORYSJ,PROT2_ORYSJ,A0A0P0W1G6_ORYSJ,A0A0P0X1E9_ORYSJ PROT1 PROT Os03g0644400 LOC_Os03g44230 OSJNBa0038E17.23,LOC_Os07g01090 B1026C12.12,Os03g0644400 OSNPB_030644400,Os07g0100800 OSNPB_070100800 FUNCTION: Proline transporter that mediates proline transport across the plasma membrane when expressed in a heterologous system (Xenopus oocytes). {ECO:0000269|PubMed:10945345}.,FUNCTION: Proline transporter that mediates proline transport across the plasma membrane. {ECO:0000250}. ENOG411DTDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Putative laccase-5 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 5) (Diphenol oxidase 5) (Urishiol oxidase 5),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) Q5N9W4,A0A0P0VAD4 LAC5_ORYSJ,A0A0P0VAD4_ORYSJ LAC5 Os01g0843800 LOC_Os01g62600 OsJ_003951 P0406G08.30,Os01g0843800 OSNPB_010843800 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ENOG411DTDF PUMP1 O81845 PUMP1_ARATH Mitochondrial uncoupling protein 1 (AtPUMP1) DISRUPTION PHENOTYPE: Slight reduction of shoot mass. {ECO:0000269|PubMed:17148605}. Photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate. Decreased inflorescence biomass; Decrease in photosynthesis-A. Fernie-2006 FUNCTION: PUMPS are mitochondrial transporter proteins that create proton leaks across the inner mitochondrial membrane, thus uncoupling oxidative phosphorylation. This leads to a decrease in the efficiency of oxidative phosphorylation and an increase in heat production. Is involved in protecting plant cells against oxidative stress damage and maintaining the redox balance of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. May play a regulatory role during photorespiration. {ECO:0000269|PubMed:11566183, ECO:0000269|PubMed:13678271, ECO:0000269|PubMed:17148605, ECO:0000269|PubMed:17980348, ECO:0000269|PubMed:19875678, ECO:0000269|PubMed:21912606}. MISCELLANEOUS: Over-expression of Arabidopsis UCP1 in tobacco plants increases tolerance to oxidative stress caused by exogenous hydrogen peroxide, or by drought and salt. {ECO:0000305|PubMed:13678271}. R-ATH-167826;R-ATH-167827; 32662 Mitochondrial uncoupling protein 1 (AtPUMP1) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; oxidative phosphorylation uncoupler activity [GO:0017077]; mitochondrial transmembrane transport [GO:1990542]; mitochondrial transport [GO:0006839]; photorespiration [GO:0009853] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:17148605, ECO:0000269|PubMed:9662458}. locus:2080300; AT3G54110 mitochondrial uncoupling protein Mitochondrial carrier protein, expressed (Os11g0707800 protein) (cDNA clone:006-302-D12, full insert sequence) Q2QZ12 Q2QZ12_ORYSJ Os11g0707800 LOC_Os11g48040 Os11g0707800 OsJ_34888 OSNPB_110707800 ENOG411DTDH EXPA13 Q9M9P0 EXP13_ARATH Expansin-A13 (AtEXPA13) (Alpha-expansin-13) (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 28976 Expansin-A13 (AtEXPA13) (Alpha-expansin-13) (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] locus:2097695; AT3G03220 plant-type cell wall organization Expansin-A10 (Alpha-expansin-10) (OsEXP10) (OsEXPA10) (OsaEXPa1.28),Os04g0583500 protein Q7XUD0,A0A0P0WDX8 EXP10_ORYSJ,A0A0P0WDX8_ORYSJ EXPA10 EXP10 Os04g0583500 LOC_Os04g49410 OsJ_15914 OSJNBa0088A01.16,Os04g0583500 OSNPB_040583500 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DTDI GCP1 O22145 OSGP2_ARATH Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial (EC 2.3.1.234) (Glycoprotease 1) (N6-L-threonylcarbamoyladenine synthase) (t(6)A synthase) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein GCP1) (tRNA threonylcarbamoyladenosine biosynthesis protein GCP1) DISRUPTION PHENOTYPE: Embryonic lethal. {ECO:0000269|PubMed:19694617}. Embryo defective; Globular-Adamska-2009 FUNCTION: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance (By similarity). May have a role in embryonic development in plants. {ECO:0000255|HAMAP-Rule:MF_03179}. ARA:AT2G45270-MONOMER; 2.3.1.234 52996 Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial (EC 2.3.1.234) (Glycoprotease 1) (N6-L-threonylcarbamoyladenine synthase) (t(6)A synthase) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein GCP1) (tRNA threonylcarbamoyladenosine biosynthesis protein GCP1) EKC/KEOPS complex [GO:0000408]; mitochondrial inner membrane [GO:0005743]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; N(6)-L-threonylcarbamoyladenine synthase [GO:0061711]; embryo development ending in seed dormancy [GO:0009793]; tRNA threonylcarbamoyladenosine modification [GO:0002949] DEVELOPMENTAL STAGE: Expressed transiently at the early stages of seedling development. Maximal expression is reached during week 3 after seed germination. {ECO:0000269|PubMed:19694617}. TISSUE SPECIFICITY: Expressed in young developing leaves, roots, flowers and siliques. {ECO:0000269|PubMed:19694617}. locus:2050872; AT2G45270 tRNA threonylcarbamoyladenosine biosynthesis protein Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial (EC 2.3.1.234) (Glycoprotease 1) (N6-L-threonylcarbamoyladenine synthase) (t(6)A synthase) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein Os12g0485000) (tRNA threonylcarbamoyladenosine biosynthesis protein Os12g0485000),Os12g0485000 protein (Fragment),Os01g0295900 protein (Fragment) Q2QQS9,A0A0P0YA28,A0A0P0V193 Q2QQS9_ORYSJ,A0A0P0YA28_ORYSJ,A0A0P0V193_ORYSJ Os12g0485000 GCP1 LOC_Os12g29990 Os12g0485000 OSNPB_120485000,Os12g0485000 OSNPB_120485000,Os01g0295900 OSNPB_010295900 FUNCTION: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance. {ECO:0000256|HAMAP-Rule:MF_03179}. ENOG411DTDJ ALKBH2 Q9SIE0,A0A1P8B1U3,A0A1P8B1V2,A0A1P8B1T8 ALKB2_ARATH,A0A1P8B1U3_ARATH,A0A1P8B1V2_ARATH,A0A1P8B1T8_ARATH DNA oxidative demethylase ALKBH2 (EC 1.14.11.33) (Alkylated DNA repair protein alkB homolog 2) (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2),Oxidoreductase, 2OG-Fe(II) oxygenase family protein DISRUPTION PHENOTYPE: Enhanced sensitivity to the methylating agent methylmethanesulphonate (MMS) leading to abnormal seedlings in presence of MMS. {ECO:0000269|PubMed:22532610}. FUNCTION: Dioxygenase that repairs alkylated DNA containing 1-methyladenine and 1-ethenoadenine by oxidative demethylation. Accepts double-stranded and single-stranded substrates, with a preference for dsDNA over ssDNA. Confers resistance to methylating agents such as methylmethanesulphonate (MMS). {ECO:0000269|PubMed:22532610}. 1.14.11.33 35515,28953,39411,33989 DNA oxidative demethylase ALKBH2 (EC 1.14.11.33) (Alkylated DNA repair protein alkB homolog 2) (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2),Oxidoreductase, 2OG-Fe(II) oxygenase family protein nucleus [GO:0005634]; 1-ethyladenine demethylase activity [GO:0103053]; DNA demethylase activity [GO:0035514]; metal ion binding [GO:0046872]; DNA repair [GO:0006281],oxidoreductase activity [GO:0016491] DEVELOPMENTAL STAGE: In seedlings, mostly present in the shoot meristematic region, as well as in the vasculature of the hypocotyl and root. Expressed in both primary and lateral root vasculature. In flowers, accumulates in sepals, stem, carpel tissue and anther filaments. {ECO:0000269|PubMed:22532610}. TISSUE SPECIFICITY: Expressed ubiquitously, including in seedlings, leaves and flowers. {ECO:0000269|PubMed:22532610}. locus:2060430; AT2G22260 2OG-Fe(II) oxygenase superfamily Os06g0286310 protein A0A0P0WVQ1 A0A0P0WVQ1_ORYSJ Os06g0286310 OSNPB_060286310 ENOG411DTDK CBSPPR1 Q8VYD6 PP374_ARATH Pentatricopeptide repeat-containing protein At5g10690 (CBS domain-containing protein CBSPPR1) 64491 Pentatricopeptide repeat-containing protein At5g10690 (CBS domain-containing protein CBSPPR1) cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2159654; AT5G10690 Pentatricopeptide repeat-containing protein Os09g0431600 protein A0A0P0XNN2 A0A0P0XNN2_ORYSJ Os09g0431600 OSNPB_090431600 ENOG411DTDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os06g0271000 protein A0A0P0WVH1 A0A0P0WVH1_ORYSJ Os06g0271000 OSNPB_060271000 ENOG411DTDP NHD2,NHD1 Q9C6D3,Q9LT68 NHD2_ARATH,NHD1_ARATH Sodium/proton antiporter 2 (AtNHD2) (Na(+)/H(+) antiporter 2),Sodium/proton antiporter 1 (AtNHD1) (Na(+)/H(+) antiporter 1) DISRUPTION PHENOTYPE: Decreased biomasses and lower chlorophyll levels after sodium feeding. Increased Na(+) levels in chloroplasts in high sodium chloride conditions but impaired photosynthetic performance. Altered levels of phenylalanine and tyrosine. {ECO:0000269|PubMed:24617758}. FUNCTION: Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. {ECO:0000250|UniProtKB:Q9LT68}.,FUNCTION: Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. {ECO:0000269|PubMed:24617758}. 45447,61368 Sodium/proton antiporter 2 (AtNHD2) (Na(+)/H(+) antiporter 2),Sodium/proton antiporter 1 (AtNHD1) (Na(+)/H(+) antiporter 1) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; sodium ion transport [GO:0006814],chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; pyruvate transmembrane transporter activity [GO:0050833]; pyruvate transport [GO:0006848]; response to salt stress [GO:0009651]; sodium ion transport [GO:0006814] TISSUE SPECIFICITY: Mostly expressed in mature and senescent leaves, and, to a lower extent, in seeds, roots, shoots, flowers and developing siliques. {ECO:0000269|PubMed:24617758}. locus:2007243;,locus:2090664; AT1G49810,AT3G19490 Citrate transporter Os09g0109800 protein,Os09g0109800 protein (Putative Na+/H+ antiporter) (cDNA clone:J033075C14, full insert sequence),Os09g0109800 protein (Fragment) Q0J3I3,Q6YWA3,A0A0P0XK03,A0A0P0XJN2 Q0J3I3_ORYSJ,Q6YWA3_ORYSJ,A0A0P0XK03_ORYSJ,A0A0P0XJN2_ORYSJ Os09g0109800 OSNPB_090109800,P0501E09.36-1 Os09g0109800 OSNPB_090109800 ENOG411DTDQ UBP20,AGD8,AGD10,AGD9 Q9FPS7,Q8H100,O82171,Q9FIQ0 UBP20_ARATH,AGD8_ARATH,AGD10_ARATH,AGD9_ARATH Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.4.19.12) (Deubiquitinating enzyme 20) (AtUBP20) (Ubiquitin thioesterase 20) (Ubiquitin-specific-processing protease 20),Probable ADP-ribosylation factor GTPase-activating protein AGD8 (ARF GAP AGD8) (Protein ARF-GAP DOMAIN 8) (AtAGD8),ADP-ribosylation factor GTPase-activating protein AGD10 (ARF GAP AGD10) (Protein ARF-GAP DOMAIN 10) (AtAGD10) (Protein MATERNAL EFFECT EMBRYO ARREST 28) (Protein ROOT AND POLLEN ARFGAP),Probable ADP-ribosylation factor GTPase-activating protein AGD9 (ARF GAP AGD9) (Protein ARF-GAP DOMAIN 9) (AtAGD9) DISRUPTION PHENOTYPE: Plants are arrested during endosperm development and have altered root hair development and pollen tube elongation. {ECO:0000269|PubMed:16731582}. Pollen development defective. Slow pollen tube growth (no effect on fertility); Homozygotes are viable: Abnormal root hair development-W. Yang-2006 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}.,FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). {ECO:0000250}.,FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Activates ARF1 and ARF2. Required for female gametophyte development. Involved in root hair and pollen tube growth. {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:16731582}. ARA:AT4G17895-MONOMER; R-ATH-6811434; 3.4.19.12 78633,44441,43097,43550 Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.4.19.12) (Deubiquitinating enzyme 20) (AtUBP20) (Ubiquitin thioesterase 20) (Ubiquitin-specific-processing protease 20),Probable ADP-ribosylation factor GTPase-activating protein AGD8 (ARF GAP AGD8) (Protein ARF-GAP DOMAIN 8) (AtAGD8),ADP-ribosylation factor GTPase-activating protein AGD10 (ARF GAP AGD10) (Protein ARF-GAP DOMAIN 10) (AtAGD10) (Protein MATERNAL EFFECT EMBRYO ARREST 28) (Protein ROOT AND POLLEN ARFGAP),Probable ADP-ribosylation factor GTPase-activating protein AGD9 (ARF GAP AGD9) (Protein ARF-GAP DOMAIN 9) (AtAGD9) thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],cytosol [GO:0005829]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872],Golgi apparatus [GO:0005794]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555],GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Expressed specifically in roots, pollen grains and pollen tubes. {ECO:0000269|PubMed:16731582}. locus:505006491;,locus:2141060;,locus:2063429;,locus:2178545; AT4G17895,AT4G17890,AT2G35210,AT5G46750 ADP-ribosylation factor GTPase-activating protein Os03g0854100 protein (Putative zinc finger protein) (Rev interacting-like family protein, putative, expressed),GTPase activating protein, putative, expressed (Os10g0574800 protein),Os03g0854100 protein (Fragment) Q84T71,Q7XBX2,A0A0P0W662 Q84T71_ORYSJ,Q7XBX2_ORYSJ,A0A0P0W662_ORYSJ Os03g0854100 LOC_Os03g63710 Os03g0854100 Os03g63710 OSNPB_030854100,LOC_Os10g42420 Os10g0574800 OSJNBa0003O19.4 OSNPB_100574800,Os03g0854100 OSNPB_030854100 ENOG411DTDR Q8VZK2 Q8VZK2_ARATH Translation machinery-associated protein 22 21591 Translation machinery-associated protein 22 ribosome [GO:0005840]; translation initiation complex [GO:0070992]; mRNA binding [GO:0003729]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; IRES-dependent translational initiation of linear mRNA [GO:0002192]; translation reinitiation [GO:0002188] locus:2143079; AT5G11900 Translation machinery-associated protein Translation machinery-associated protein 22 Q5SMX7 Q5SMX7_ORYSJ Os01g0195500 Os01g0195500 OSNPB_010195500 P0001B06.33 P0498B01.19 ENOG411DTDT PIP2-8,PIP2-7 Q9ZVX8,P93004 PIP28_ARATH,PIP27_ARATH Probable aquaporin PIP2-8 (Plasma membrane intrinsic protein 2-8) (AtPIP2;8) (Plasma membrane intrinsic protein 3b) (PIP3b),Aquaporin PIP2-7 (Plasma membrane intrinsic protein 2-7) (AtPIP2;7) (Plasma membrane intrinsic protein 3) (Salt stress-induced major intrinsic protein) FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}.,FUNCTION: Water channel required to facilitate the transport of water across cell membrane. May be involved in the osmoregulation in plants under high osmotic stress such as under a high salt condition. {ECO:0000269|PubMed:10102577, ECO:0000269|PubMed:9276952}. 29500,29743 Probable aquaporin PIP2-8 (Plasma membrane intrinsic protein 2-8) (AtPIP2;8) (Plasma membrane intrinsic protein 3b) (PIP3b),Aquaporin PIP2-7 (Plasma membrane intrinsic protein 2-7) (AtPIP2;7) (Plasma membrane intrinsic protein 3) (Salt stress-induced major intrinsic protein) integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to abscisic acid [GO:0009737],anchored component of plasma membrane [GO:0046658]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Expressed in roots and floral buds. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Highly expressed in flowers, expressed at low levels in siliques, and at low level in leaves and roots. {ECO:0000269|PubMed:10102577, ECO:0000269|PubMed:11806824}. locus:2039385;,locus:2131601; AT2G16850,AT4G35100 plasma membrane intrinsic protein NA NA NA NA NA NA NA ENOG411DTDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Transcription factor TGAL7 (bZIP transcription factor 70) (OsbZIP70) Q6H434 TGAL7_ORYSJ TGAL7 Os09g0280500 LOC_Os09g10840 P0651G05.17 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411DTDV Q94JS1,Q944L8,O65386,F4JVS4 Q94JS1_ARATH,Q944L8_ARATH,O65386_ARATH,F4JVS4_ARATH AT4g26860/F10M23_200 (Putative proline synthetase associated protein) (Putative pyridoxal phosphate-dependent enzyme, YBL036C type),At1g11930/F12F1_20 (Putative pyridoxal phosphate-dependent enzyme, YBL036C type),F12F1.20 protein (Putative pyridoxal phosphate-dependent enzyme, YBL036C type),Putative pyridoxal phosphate-dependent enzyme, YBL036C type FUNCTION: Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'-phosphate (PLP), the active form of vitamin B6. {ECO:0000256|HAMAP-Rule:MF_03225}. 26639,28008,27767,27780 AT4g26860/F10M23_200 (Putative proline synthetase associated protein) (Putative pyridoxal phosphate-dependent enzyme, YBL036C type),At1g11930/F12F1_20 (Putative pyridoxal phosphate-dependent enzyme, YBL036C type),F12F1.20 protein (Putative pyridoxal phosphate-dependent enzyme, YBL036C type),Putative pyridoxal phosphate-dependent enzyme, YBL036C type intracellular [GO:0005622]; pyridoxal phosphate binding [GO:0030170] locus:2008910;,locus:2116387; AT4G26860,AT1G11930 proline synthase co-transcribed bacterial homolog Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) B9EWG6,B9FMH1 B9EWG6_ORYSJ,B9FMH1_ORYSJ Os01g0950866 OsJ_04770 OSNPB_010950866,Os05g0150000 OsJ_17136 OSNPB_050150000 FUNCTION: Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'-phosphate (PLP), the active form of vitamin B6. {ECO:0000256|HAMAP-Rule:MF_03225}. ENOG411DTDW Q940A6 PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic 94617 Pentatricopeptide repeat-containing protein At4g19440, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT4G19440 Pentatricopeptide repeat-containing protein At4g19440 Os08g0290000 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6Z2B6 Q6Z2B6_ORYSJ Os08g0290000 Os08g0290000 OJ1034_C08.27 OsJ_26764 OSNPB_080290000 P0467G09.1 ENOG411DTDX Q9M0Y6,A0A1P8B6D2 DPNPM_ARATH,A0A1P8B6D2_ARATH Putative PAP-specific phosphatase, mitochondrial (EC 3.1.3.7) (3'(2'),5'-bisphosphate nucleotidase) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase),Inositol monophosphatase family protein FUNCTION: Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP. {ECO:0000250}. ARA:AT4G05090-MONOMER; 3.1.3.7 43531,40035 Putative PAP-specific phosphatase, mitochondrial (EC 3.1.3.7) (3'(2'),5'-bisphosphate nucleotidase) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase),Inositol monophosphatase family protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; 3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; metal ion binding [GO:0046872]; phosphatidylinositol phosphorylation [GO:0046854],phosphatidylinositol phosphorylation [GO:0046854] locus:2115698; AT4G05090 PAP-specific phosphatase Os07g0558300 protein (cDNA clone:J013152B16, full insert sequence),Os07g0558200 protein (Putative 3(2),5-bisphosphate nucleotidase),Os07g0558200 protein (Fragment) Q0D5I5,Q6Z413,A0A0P0X7L6 Q0D5I5_ORYSJ,Q6Z413_ORYSJ,A0A0P0X7L6_ORYSJ Os07g0558300 Os07g0558300 OsJ_24720 OSNPB_070558300,Os07g0558200 Os07g0558200 OSNPB_070558200 P0567H04.12,Os07g0558200 OSNPB_070558200 ENOG411DTDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Leaf senescence related protein-like (Os07g0656000 protein) Q8H3D7 Q8H3D7_ORYSJ P0018C07.125 Os07g0656000 OsJ_25412 OSNPB_070656000 ENOG411DTDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sucrose transporter Sucrose transport protein SUT1 (Sucrose permease 1) (Sucrose transporter 1) (OsSUT1) (Sucrose-proton symporter 1),Os03g0170900 protein (Fragment) Q10R54,A0A0P0VTN8 SUT1_ORYSJ,A0A0P0VTN8_ORYSJ SUT1 Os03g0170900 LOC_Os03g07480 OSJNBa0091P11.1,Os03g0170900 OSNPB_030170900 DISRUPTION PHENOTYPE: Male sterility probably due to impaired pollen germination. {ECO:0000269|PubMed:20603282}. FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, salicin, helicin, and alpha-phenylglucoside. Probably required for apoplastic phloem sucrose loading in source tissues (e.g. leaves) in order to transport it to sink tissues (e.g. roots, flowers). Probably not involved in transport of sugars across the symplastic discontinuity between the endosperm and the embryo. Essential for normal pollen germination, but not for pollen maturation or starch accumulation in pollen. {ECO:0000269|PubMed:19965875, ECO:0000269|PubMed:20603282, ECO:0000269|PubMed:9522469}. ENOG411DSCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os02g0706900 protein (Putative hydrolase) Q8S3R0 Q8S3R0_ORYSJ 49D11.21 Os02g0706900 OsJ_35956 OSJNBb0060O16.11 OSNPB_020706900 P0680A05.37 ENOG411E8NE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NG RTFL15,DVL6,F3F19.27 Q6X5T8,Q6IM95,Q9SAF8 Q6X5T8_ARATH,Q6IM95_ARATH,Q9SAF8_ARATH DVL5 (ROTUNDIFOLIA like 15),DVL6 (ROTUNDIFOLIA like 16),At1g13245 (DVL4) (F3F19.27 protein) (ROTUNDIFOLIA like 17) (Uncharacterized protein F3F19.27) 5223,4620,4719 DVL5 (ROTUNDIFOLIA like 15),DVL6 (ROTUNDIFOLIA like 16),At1g13245 (DVL4) (F3F19.27 protein) (ROTUNDIFOLIA like 17) (Uncharacterized protein F3F19.27) shoot system development [GO:0048367] locus:4010713587;,locus:1005716552;,locus:504956107; AT1G68825,AT3G25717,AT1G13245 DVL family Os01g0525350 protein,Os05g0549232 protein A0A0P0V3H4,A0A0P0WQ34 A0A0P0V3H4_ORYSJ,A0A0P0WQ34_ORYSJ Os01g0525350 OSNPB_010525350,Os05g0549232 OSNPB_050549232 ENOG411E8NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VTC domain NA NA NA NA NA NA NA ENOG411E8NW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0457400 protein (Fragment) A0A0P0X5Q6 A0A0P0X5Q6_ORYSJ Os07g0457400 OSNPB_070457400 ENOG411E8NS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DSS1/SEM1 family NA NA NA NA NA NA NA ENOG411E8N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0381500 protein (Fragment) A0A0P0W9I5 A0A0P0W9I5_ORYSJ Os04g0381500 OSNPB_040381500 ENOG411EIU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEZ5 Q9LUL1 CSPLE_ARATH CASP-like protein 2A2 (AtCASPL2A2) DISRUPTION PHENOTYPE: Delayed timing of petal abscission. {ECO:0000269|PubMed:22992509}. FUNCTION: Involved in floral organ shedding. {ECO:0000269|PubMed:22992509}. 19184 CASP-like protein 2A2 (AtCASPL2A2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536]; floral organ abscission [GO:0010227] TISSUE SPECIFICITY: Mostly expressed in flowers and buds and, to a lower extent, in roots and yellow siliques. Localized in the floral organ abscission zone. {ECO:0000269|PubMed:22992509}. locus:2091045; AT3G14380 Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411DZ3Y ATATH8 O80962,Q94AB3 O80962_ARATH,Q94AB3_ARATH Protein kinase superfamily protein (Putative ABC transporter; alternative splicing isoform gene prediction data combined with cDNA alignment data to generate this model),At2g39190/T16B24.17 (Protein kinase superfamily protein) (Putative ABC transporter; alternative splicing isoform Structure for this isoform supported by cDNA: gi_15081812_gb_AY048299 1_) ARA:GQT-2416-MONOMER; 91170,41680 Protein kinase superfamily protein (Putative ABC transporter; alternative splicing isoform gene prediction data combined with cDNA alignment data to generate this model),At2g39190/T16B24.17 (Protein kinase superfamily protein) (Putative ABC transporter; alternative splicing isoform Structure for this isoform supported by cDNA: gi_15081812_gb_AY048299 1_) kinase activity [GO:0016301]; transporter activity [GO:0005215],kinase activity [GO:0016301] locus:2056123; AT2G39190 ABC1 family Os02g0805800 protein (Putative ubiquinone biosynthesis protein ubiB),Os02g0805800 protein (Fragment) Q6K838,A0A0N7KGA4 Q6K838_ORYSJ,A0A0N7KGA4_ORYSJ Os02g0805800 Os02g0805800 OJ1111_C07.3 OJ1548_F12.25 OsJ_08784 OSNPB_020805800,Os02g0805800 OSNPB_020805800 ENOG411DSHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Strictosidine synthase NA NA NA NA NA NA NA ENOG411DSHS PAPS2,PAPS4,PAPS1 O82312,Q8VYW1,Q9LMT2,A0A1P8B067,A0A1P8B088 PAPS2_ARATH,PAPS4_ARATH,PAPS1_ARATH,A0A1P8B067_ARATH,A0A1P8B088_ARATH Nuclear poly(A) polymerase 2 (PAP(II)) (Poly(A) polymerase II) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 2),Nuclear poly(A) polymerase 4 (AtPAP(IV)) (PAP(IV)) (Poly(A) polymerase IV) (nPAP) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 4),Nuclear poly(A) polymerase 1 (PAP(I)) (Poly(A) polymerase I) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 1),Poly(A) polymerase 2 DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:19956626}. No homozygous mutant plants recovered-A. Hunt-2009 FUNCTION: Essential protein (PubMed:19956626). Polymerase that creates the 3'-poly(A) tail of mRNA's (PubMed:15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity). Mediates the polyadenylation of RNAs that are associated with polynucleotide phosphorylase (e.g. PNP1) (PubMed:10872823). {ECO:0000250|UniProtKB:P25500, ECO:0000269|PubMed:15297145, ECO:0000269|PubMed:19956626, ECO:0000305|PubMed:10872823}.,FUNCTION: Essential protein (PubMed:19956626). Polymerase that creates the 3'-poly(A) tail of mRNA's (PubMed:15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity). {ECO:0000250|UniProtKB:P25500, ECO:0000269|PubMed:15297145, ECO:0000269|PubMed:19956626}. R-ATH-72163; 2.7.7.19; 2.7.7.19 90968,83943,80184,87998,86437 Nuclear poly(A) polymerase 2 (PAP(II)) (Poly(A) polymerase II) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 2),Nuclear poly(A) polymerase 4 (AtPAP(IV)) (PAP(IV)) (Poly(A) polymerase IV) (nPAP) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 4),Nuclear poly(A) polymerase 1 (PAP(I)) (Poly(A) polymerase I) (EC 2.7.7.19) (Polynucleotide adenylyltransferase 1),Poly(A) polymerase 2 cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; polynucleotide adenylyltransferase activity [GO:0004652]; RNA binding [GO:0003723]; mRNA polyadenylation [GO:0006378]; RNA polyadenylation [GO:0043631],nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; polynucleotide adenylyltransferase activity [GO:0004652]; RNA binding [GO:0003723]; mRNA polyadenylation [GO:0006378]; RNA polyadenylation [GO:0043631],nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; polynucleotide adenylyltransferase activity [GO:0004652]; RNA binding [GO:0003723]; flower development [GO:0009908]; leaf development [GO:0048366]; mRNA polyadenylation [GO:0006378]; negative regulation of cell proliferation [GO:0008285]; negative regulation of innate immune response [GO:0045824]; petal formation [GO:0048451]; RNA polyadenylation [GO:0043631],nucleus [GO:0005634]; polynucleotide adenylyltransferase activity [GO:0004652]; RNA binding [GO:0003723]; RNA 3'-end processing [GO:0031123]; RNA polyadenylation [GO:0043631] TISSUE SPECIFICITY: Mostly expressed in flowers (highly in the style, receptacle and pedicel, but weakly in the vasculature of sepals) and hypocotyls, and, to a lower extent, in roots and stems. Barely detected in leaves (petioles and vascular system) (PubMed:15297145, PubMed:19956626). {ECO:0000269|PubMed:15297145, ECO:0000269|PubMed:19956626}.,TISSUE SPECIFICITY: Mostly expressed in flowers (very active in pollen, sepals, styles, and stigmas), cotyledons and hypocotyls, and, to a lower extent, in roots (confined to the vascular tissue in the radicle) and leaves (in the vascular tissue and leaf petioles). Barely detected in stems (PubMed:15297145, PubMed:19956626). Active in the primary and secondary root systems (PubMed:19956626). {ECO:0000269|PubMed:15297145, ECO:0000269|PubMed:19956626}.,TISSUE SPECIFICITY: Expressed in stems, cotyledons, hypocotyls, radicle, leaves, and, to a lower extent, in roots (including primary and secondary roots as well as root tips) and flowers (PubMed:15297145, PubMed:19956626). In radicle, roots and leaves, mainly present in vascular tissues (PubMed:19956626). {ECO:0000269|PubMed:15297145, ECO:0000269|PubMed:19956626}. locus:2043560;,locus:2134113;,locus:2030943; AT2G25850,AT4G32850,AT1G17980 poly(A) polymerase-like Os06g0319600 protein,Os06g0558766 protein (Fragment) A0A0P0WW08,A0A0P0WXU0 A0A0P0WW08_ORYSJ,A0A0P0WXU0_ORYSJ Os06g0319600 OSNPB_060319600,Os06g0558766 OSNPB_060558766 ENOG411DSHP F4JKN5,A0A1P8B8P3,A0A1P8B8M2,A0A1P8B8N2,A0A1P8B8M7,A0A1P8B8L8,A0A1P8B8L7,A0A1P8B8M0,F4JKN4 F4JKN5_ARATH,A0A1P8B8P3_ARATH,A0A1P8B8M2_ARATH,A0A1P8B8N2_ARATH,A0A1P8B8M7_ARATH,A0A1P8B8L8_ARATH,A0A1P8B8L7_ARATH,A0A1P8B8M0_ARATH,F4JKN4_ARATH Alpha/beta-Hydrolases superfamily protein 104359,99867,118822,121911,92816,93728,121413,122823,133454 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2116209; AT4G34310 Inherit from KOG: serine active site containing 1 Os03g0185500 protein (Fragment) A0A0P0VTY5 A0A0P0VTY5_ORYSJ Os03g0185500 OSNPB_030185500 ENOG411DSHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os05g0112800 protein (Putative 33 kDa secretory protein) (cDNA clone:002-142-B11, full insert sequence) Q75L18 Q75L18_ORYSJ Os05g0112800 Os05g0112800 OSJNBb0041A22.2 OSNPB_050112800 ENOG411DSHT ERDJ3B Q9LZK5 DNJ19_ARATH DnaJ protein ERDJ3B (Chaperone protein dnaJ 19) (AtDjB19) (AtJ19) (Endoplasmic reticulum dnaJ domain-containing protein 3B) (AtERdj3B) (Protein SCJ1 homolog ERDJ3B) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are insensitive to seedling growth inhibition in response to the pathogen-associated molecular pattern (PAMP) elf18. The double mutant erdj3b and p58ipk is male gametophytic lethal. {ECO:0000269|PubMed:18718935, ECO:0000269|PubMed:19763086}. same as smb-3 single mutant,Homozygotes have WT phenotype,Double homozygotes not obtained because of male gametophytic defect. FUNCTION: Regulates protein folding in the endoplasmic reticulum (ER) lumen. Forms a complex in the ER with SDF2 and MED37A/BIP1 which is required for the proper accumulation and function of the surface-exposed leucine-rich repeat receptor kinases EFR involved in pathogen-associated molecular pattern (PAMP) triggered immunity. {ECO:0000269|PubMed:19763086}. 39200 DnaJ protein ERDJ3B (Chaperone protein dnaJ 19) (AtDjB19) (AtJ19) (Endoplasmic reticulum dnaJ domain-containing protein 3B) (AtERdj3B) (Protein SCJ1 homolog ERDJ3B) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; plasma membrane [GO:0005886]; unfolded protein binding [GO:0051082]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; protein folding [GO:0006457] TISSUE SPECIFICITY: Expressed in leaves, flower buds and flowers. {ECO:0000269|PubMed:18718935}. locus:2081725; AT3G62600 DnaJ homolog subfamily B member DnaJ protein ERDJ3B (Chaperone protein dnaJ B6) (OsDjB6) (Endoplasmic reticulum dnaJ domain-containing protein 3B) (OsERdj3B) B9FHF3 DJB6_ORYSJ ERDJ3B DJB6 Os05g0156500 LOC_Os05g06440 OsJ_17183 P0431G05.15 P0676G05.5 FUNCTION: May play a role in protein folding in the endoplasmic reticulum. {ECO:0000305|PubMed:24153418}. ENOG411DSHK Q9SMR9 Q9SMR9_ARATH Cell wall integrity/stress response component-like protein (Uncharacterized protein AT4g39840) (Uncharacterized protein T5J17.10) 50610 Cell wall integrity/stress response component-like protein (Uncharacterized protein AT4g39840) (Uncharacterized protein T5J17.10) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:2139985; AT4G39840 NA Os08g0411300 protein,Os09g0371600 protein Q6Z576,Q6H4E4 Q6Z576_ORYSJ,Q6H4E4_ORYSJ Os08g0411300 Os08g0411300 OSJNBa0007M04.2 OSNPB_080411300 P0042B03.46,B1168F12.31 Os09g0371600 OSNPB_090371600 ENOG411DSHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os08g0112400 protein (Putative pentatricopeptide (PPR) repeat-containing protein),Os07g0294600 protein (Fragment) Q6ZCC8,Q0D757 Q6ZCC8_ORYSJ,Q0D757_ORYSJ Os08g0112400 OSNPB_080112400 P0498H04.20,Os07g0294600 Os07g0294600 OSNPB_070294600 ENOG411DSHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DSHB CPL2 Q5YDB5,F4K802 CPL2_ARATH,F4K802_ARATH RNA polymerase II C-terminal domain phosphatase-like 2 (FCP-like 2) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 2) (AtCPL2) (CTD phosphatase-like 2),Carboxyl-terminal domain (Ctd) phosphatase-like 2 DISRUPTION PHENOTYPE: Leaf expansion defects, early flowering, low fertility, and increased salt (NaCl) sensitivity. Produces shorter hypocotyls than wild-type plants in the light, but not in the dark. {ECO:0000269|PubMed:15388846, ECO:0000269|PubMed:18506580}. leaf expansion defects early flowering low fertility and increased salt sensitivity. cpl2 mutant plants produced shorter hypocotyls than wild-type plants in the light but were indistinguishable from wild type in the dark. FUNCTION: Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II. Together with CPL1, required for male gametes fertility. Multifunctional regulator that modulates plant growth, stress, and phytohormones responses. Positive transcription regulator of genes involved in high salinity resistance and auxin mediated signaling pathway. {ECO:0000269|PubMed:15388846, ECO:0000269|PubMed:18506580}. 3.1.3.16 85953,86449 RNA polymerase II C-terminal domain phosphatase-like 2 (FCP-like 2) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 2) (AtCPL2) (CTD phosphatase-like 2),Carboxyl-terminal domain (Ctd) phosphatase-like 2 cytoplasm [GO:0005737]; DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; metal ion binding [GO:0046872]; phosphoserine phosphatase activity [GO:0004647]; RNA binding [GO:0003723]; auxin-activated signaling pathway [GO:0009734]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; multicellular organism development [GO:0007275]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],phosphatase activity [GO:0016791]; RNA binding [GO:0003723]; developmental growth [GO:0048589]; response to auxin [GO:0009733]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Expressed in seedlings, particularly in tissues undergoing cell division and expansion, petioles, cotyledons vasculature, leaves, shoot and root meristems, and flowers, especially in buds and organs vasculatures. {ECO:0000269|PubMed:18506580}. locus:2150134; AT5G01270 C-terminal domain phosphatase-like C-terminal domain phosphatase-like protein (Os01g0857000 protein),Os01g0857000 protein (Fragment) Q5N890,A0A0P0VAJ4 Q5N890_ORYSJ,A0A0P0VAJ4_ORYSJ OJ1402_H07.29-1 P0683F02.6-1 Os01g0857000 OsJ_04124 OSNPB_010857000,Os01g0857000 OSNPB_010857000 ENOG411DSHE Q0WUK0,Q8L7T4 Q0WUK0_ARATH,Q8L7T4_ARATH Dentin sialophosphoprotein, putative (DUF1296) (Uncharacterized protein At3g13990),AT3g13990/MDC16_11 (Dentin sialophosphoprotein, putative (DUF1296)) 92169,92297 Dentin sialophosphoprotein, putative (DUF1296) (Uncharacterized protein At3g13990),AT3g13990/MDC16_11 (Dentin sialophosphoprotein, putative (DUF1296)) cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729] locus:2088202; AT3G13990 Protein of unknown function (DUF1296) Hydroxyproline-rich glycoprotein-like (Os06g0206100 protein) (cDNA clone:J023108L12, full insert sequence) Q69NN2 Q69NN2_ORYSJ Os06g0206100 Os06g0206100 OSJNBb0015B15.30 OSNPB_060206100 P0529B09.1 ENOG411DSH9 ORC2 Q38899,F4IQY6 ORC2_ARATH,F4IQY6_ARATH Origin of replication complex subunit 2 (AtORC2),Origin recognition complex second largest subunit 2 DISRUPTION PHENOTYPE: Zygotic lethal mutant phenotype. Seeds abort early, with embryos made of up to eight cells, characterized by enlarged nuclei in endosperm with arrested cell cycle. These phenotypes are partly suppressed by mutation in MEA/MEDEA. {ECO:0000269|PubMed:15020747}. Embryo defective; Globular-U. Grossniklaus-2004 FUNCTION: Essential protein (PubMed:15020747). Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication (By similarity). {ECO:0000250, ECO:0000269|PubMed:15020747}. R-ATH-68616;R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69298; 40811,38789 Origin of replication complex subunit 2 (AtORC2),Origin recognition complex second largest subunit 2 nuclear origin of replication recognition complex [GO:0005664]; origin recognition complex [GO:0000808]; DNA replication origin binding [GO:0003688]; DNA replication [GO:0006260],nucleus [GO:0005634]; origin recognition complex [GO:0000808]; DNA replication [GO:0006260] DEVELOPMENTAL STAGE: Detected in the mature female gametophyte, in the synergids and central cell. Mostly expressed in embryos (but not the suspensor) and endosperm of preglobular stage seeds. Present in pollen as well as in pollen tubes. {ECO:0000269|PubMed:15020747}. TISSUE SPECIFICITY: Expressed in female gametophyte and embryos, and, at low levels, in trichomes, pollen and the mesophyll of leaves. Follow a cell-cycle regulation with a peak at the G1/S-phase (PubMed:16179646). Mostly expressed in siliques, flowers, flower buds and leaves, and, to a lower exent, in roots and stems (PubMed:16179646, PubMed:15358564). {ECO:0000269|PubMed:15020747, ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}. locus:2040706; AT2G37560 Origin recognition complex subunit Origin of replication complex subunit 2 (OsORC2) Q10QS7 ORC2_ORYSJ ORC2 LOC_Os03g08640 Os03g0184700 OsJ_09689 FUNCTION: Essential protein (By similarity). Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication (By similarity). {ECO:0000250, ECO:0000250|UniProtKB:Q38899}. ENOG411DSH8 POX2,POX1,MKD10.10 Q6NKX1,P92983,A0A1P8BCG0 PROD2_ARATH,PROD1_ARATH,A0A1P8BCG0_ARATH Proline dehydrogenase 2, mitochondrial (EC 1.5.5.2) (Osmotic stress-induced proline dehydrogenase) (Proline oxidase),Proline dehydrogenase 1, mitochondrial (EC 1.5.5.2) (Osmotic stress-induced proline dehydrogenase) (Proline oxidase) (Protein EARLY RESPONSIVE TO DEHYDRATION 5),Proline dehydrogenase (EC 1.5.5.2) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. No proline hypersensitivity. {ECO:0000269|PubMed:20403182}.,DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Proline hypersensitivity. {ECO:0000269|PubMed:12773641, ECO:0000269|PubMed:20403182}. Decreased root elongation and decreased dry weight for plants grown under low water potential conditions.,Response to lower water potential results in an NADP/NADPH ratio that is altered (lower) with respect to wild type. However the NAD/NADH ratio remains the same. FUNCTION: Converts proline to delta-1-pyrroline-5-carboxylate. {ECO:0000269|PubMed:20403182}.,FUNCTION: Converts proline to delta-1-pyrroline-5-carboxylate. {ECO:0000269|PubMed:20403182, ECO:0000269|PubMed:9847097}.,FUNCTION: Converts proline to delta-1-pyrroline-5-carboxylate. {ECO:0000256|RuleBase:RU364054}. PATHWAY: Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 1/2. ARA:AT5G38710-MONOMER;MetaCyc:AT5G38710-MONOMER;,ARA:AT3G30775-MONOMER;MetaCyc:AT3G30775-MONOMER; R-ATH-389661;R-ATH-70688; 1.5.99.B2; 1.5.5.2 53074,54956,51775 Proline dehydrogenase 2, mitochondrial (EC 1.5.5.2) (Osmotic stress-induced proline dehydrogenase) (Proline oxidase),Proline dehydrogenase 1, mitochondrial (EC 1.5.5.2) (Osmotic stress-induced proline dehydrogenase) (Proline oxidase) (Protein EARLY RESPONSIVE TO DEHYDRATION 5),Proline dehydrogenase (EC 1.5.5.2) mitochondrion [GO:0005739]; FAD binding [GO:0071949]; proline dehydrogenase activity [GO:0004657]; proline catabolic process [GO:0006562]; proline catabolic process to glutamate [GO:0010133]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414],mitochondrion [GO:0005739]; FAD binding [GO:0071949]; proline dehydrogenase activity [GO:0004657]; defense response to bacterium [GO:0042742]; proline catabolic process to glutamate [GO:0010133]; response to oxidative stress [GO:0006979]; response to water deprivation [GO:0009414],proline dehydrogenase activity [GO:0004657]; proline catabolic process [GO:0006562] DEVELOPMENTAL STAGE: Strongly expressed in senescent leaves. {ECO:0000269|PubMed:20403182}. TISSUE SPECIFICITY: Expressed in the vascular tissue and in the abscission zone of petals, sepals, stamina, pistils and siliques. Not detected in petioles. {ECO:0000269|PubMed:20403182}.,TISSUE SPECIFICITY: Ubiquitous. Highest expression in pollen grains, in the stigma and in developing embryos. {ECO:0000269|PubMed:20403182, ECO:0000269|PubMed:9847097}. locus:2166645;,locus:2089706; AT5G38710,AT3G30775 Proline dehydrogenase Proline dehydrogenase (EC 1.5.5.2) Q336U3 Q336U3_ORYSJ Os10g0550900 LOC_Os10g40360 Os10g0550900 OSNPB_100550900 FUNCTION: Converts proline to delta-1-pyrroline-5-carboxylate. {ECO:0000256|RuleBase:RU364054}. ENOG411DSH3 XXT2,XXT1 O22775,Q9LZJ3 XXT2_ARATH,XXT1_ARATH Xyloglucan 6-xylosyltransferase 2 (AtXT2) (EC 2.4.2.39) (Putative glycosyltransferase 2) (AtGT2) (EC 2.4.-.-),Xyloglucan 6-xylosyltransferase 1 (AtXT1) (EC 2.4.2.39) DISRUPTION PHENOTYPE: Reduced xyloglucan content. {ECO:0000269|PubMed:18544630}. FUNCTION: Xylosyltransferase specific to UDP-D-xylose that accepts both cellopentaose and cellohexaose as substrates, with a better use of cellohexaose, to produce xyloglucan. Adds preferentially the first xylosyl residue to the fourth glucosyl residue from the reducing end of both acceptors. Transfer one xylose mainly to the second glucose residue from the non-reducing end. The acceptor should have a minimum of four glucose residues (PubMed:16982611, PubMed:18544630). Associates with other xyloglucan-synthesizing enzymes to form multiprotein complexes for xyloglucan synthesis in the Golgi (PubMed:25392066). {ECO:0000269|PubMed:16982611, ECO:0000269|PubMed:18544630, ECO:0000269|PubMed:25392066}.,FUNCTION: Xylosyltransferase specific to UDP-D-xylose that accepts both cellopentaose and cellohexaose as substrates, with a better use of cellohexaose, to produce xyloglucan. Adds preferentially the first xylosyl residue to the fourth glucosyl residue from the reducing end of both acceptors. Transfer one xylose mainly to the second glucose residue from the non-reducing end. The acceptor should have a minimum of four glucose residues. {ECO:0000269|PubMed:12032363, ECO:0000269|PubMed:16982611, ECO:0000269|PubMed:18544630}. PATHWAY: Protein modification; protein glycosylation. ARA:AT4G02500-MONOMER;MetaCyc:AT4G02500-MONOMER;,ARA:AT3G62720-MONOMER;MetaCyc:AT3G62720-MONOMER; 2.4.2.39; 2.4.2.39; 2.4.-.-,2.4.2.39 53095,53382 Xyloglucan 6-xylosyltransferase 2 (AtXT2) (EC 2.4.2.39) (Putative glycosyltransferase 2) (AtGT2) (EC 2.4.-.-),Xyloglucan 6-xylosyltransferase 1 (AtXT1) (EC 2.4.2.39) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; protein homodimerization activity [GO:0042803]; transferase activity, transferring hexosyl groups [GO:0016758]; UDP-xylosyltransferase activity [GO:0035252]; xyloglucan 6-xylosyltransferase activity [GO:0033843]; polysaccharide biosynthetic process [GO:0000271]; xyloglucan metabolic process [GO:0010411],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring hexosyl groups [GO:0016758]; UDP-xylosyltransferase activity [GO:0035252]; xyloglucan 6-xylosyltransferase activity [GO:0033843]; polysaccharide biosynthetic process [GO:0000271]; protein glycosylation [GO:0006486]; xyloglucan metabolic process [GO:0010411] locus:2132293;,locus:2081625; AT4G02500,AT3G62720 glycosyltransferase Probable xyloglucan 6-xylosyltransferase 1 (OsXXT1) (EC 2.4.2.39) (Proteinn SHORT ROOT HAIR 2),Probable glycosyltransferase 2 (OsGT2) (EC 2.4.-.-),Os03g0300000 protein (Fragment) Q10MQ0,Q6H765,A0A0P0VWF0,A0A0P0VWF5 XXT1_ORYSJ,GT2_ORYSJ,A0A0P0VWF0_ORYSJ,A0A0P0VWF5_ORYSJ XXT1 SRH2 Os03g0300000 LOC_Os03g18820 OsJ_27597,GT2 Os02g0529600 LOC_Os02g32750 OsJ_06989 P0476H10.24,Os03g0300000 OSNPB_030300000 DISRUPTION PHENOTYPE: Root hair phenotype, characterized by short root hairs with bubble-like extrusions at the tip. {ECO:0000269|PubMed:24834920}. FUNCTION: Probable xyloglucan xylosyltransferase involved in the biosynthesis of xyloglucan in roots. {ECO:0000269|PubMed:24834920}.,FUNCTION: Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q10MQ0}. ENOG411DSH1 MDN11.12 Q9FI34 Q9FI34_ARATH Emb|CAB68190.1 (Ubiquitin carboxyl-terminal hydrolase family protein) 49723 Emb|CAB68190.1 (Ubiquitin carboxyl-terminal hydrolase family protein) hydrolase activity [GO:0016787] locus:2162702; AT5G48040 Plant organelle RNA recognition domain Os02g0526600 protein Q6H794 Q6H794_ORYSJ Os02g0526600 OSNPB_020526600 P0458B05.12 ENOG411DSH0 TYRAAT1,TYRAAT2 Q944B6,Q9LMR3,A0A1P8BET1,A0A1P8BET3 TYRA1_ARATH,TYRA2_ARATH,A0A1P8BET1_ARATH,A0A1P8BET3_ARATH Arogenate dehydrogenase 1, chloroplastic (EC 1.3.1.78) (TYRATC) (TyrAAT1),Arogenate dehydrogenase 2, chloroplastic (EC 1.3.1.78) (TyrAAT2),Arogenate dehydrogenase FUNCTION: Involved in the biosynthesis of tyrosine. Has no prephenate dehydrogenase activity. {ECO:0000269|PubMed:12354106}.,FUNCTION: Involved in the biosynthesis of tyrosine. Has a weak prephenate dehydrogenase activity. {ECO:0000269|PubMed:12354106}. MISCELLANEOUS: Unlike TYRAAT2, TYRAAT1 is composed of two highly similar and catalytically active peptide domains. No proteolytic cleavage between the two domains.,MISCELLANEOUS: Unlike TYRAAT1, TYRAAT2 is composed of a single catalytically active domain. PATHWAY: Amino-acid biosynthesis; L-tyrosine biosynthesis; L-tyrosine from L-arogenate (NADP(+) route): step 1/1. ARA:AT5G34930-MONOMER;MetaCyc:AT5G34930-MONOMER;,ARA:AT1G15710-MONOMER;MetaCyc:AT1G15710-MONOMER; 1.3.1.78 72301,40633,74907,70195 Arogenate dehydrogenase 1, chloroplastic (EC 1.3.1.78) (TYRATC) (TyrAAT1),Arogenate dehydrogenase 2, chloroplastic (EC 1.3.1.78) (TyrAAT2),Arogenate dehydrogenase chloroplast [GO:0009507]; arogenate dehydrogenase (NADP+) activity [GO:0033730]; prephenate dehydrogenase (NAD+) activity [GO:0008977]; prephenate dehydrogenase (NADP+) activity [GO:0004665]; tyrosine biosynthetic process [GO:0006571],prephenate dehydrogenase (NAD+) activity [GO:0008977]; prephenate dehydrogenase (NADP+) activity [GO:0004665]; tyrosine biosynthetic process [GO:0006571] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and seeds. More abundant in seeds. {ECO:0000269|PubMed:19136569}. locus:2183532;,locus:2036164; AT5G34930,AT1G15710 Arogenate dehydrogenase Os06g0708832 protein (Putative arogenate dehydrogenase isoform 2),Os06g0709000 protein (Putative arogenate dehydrogenase isoform 2) Q5Z9H5,Q5Z9H3 Q5Z9H5_ORYSJ,Q5Z9H3_ORYSJ Os06g0708832 OsJ_22617 OSNPB_060708832 P0655A07.10,Os06g0709000 OsJ_22619 OSNPB_060709000 P0655A07.12 ENOG411DSH7 KIN14C,KIN14D,ATK5 Q07970,F4JGP4,A0A1P8B702 KN14C_ARATH,KN14D_ARATH,A0A1P8B702_ARATH Kinesin-like protein KIN-14C (AtKIN14a) (Kinesin-like protein KatA),Kinesin-like protein KIN-14D (AtKIN14b),Kinesin-like protein DISRUPTION PHENOTYPE: Plants show defects in male meiosis, producing an abnormal number of microspores of variable sizes. Dividing cells of mutant plants lack spindle bipolarity in metaphase of mitosis. Kin14c and kin14d double mutant is gametophytically lethal (PubMed:18088313). {ECO:0000269|PubMed:11973272, ECO:0000269|PubMed:12686621, ECO:0000269|PubMed:18088313}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but dividing cells of mutant plants exhibit abnormally broadened mitotic spindles in metaphase and anaphase. However, this does not affect chromosome alignment and segregation. Kin14c and kin14d double mutant is gametophytically lethal (PubMed:18088313). {ECO:0000269|PubMed:15659646, ECO:0000269|PubMed:17220198, ECO:0000269|PubMed:18088313}. Reduced fertility due to defects in meiosis-H. Ma-2002,Abnormal mitotic spindle morphogenesis-R. Cyr-2005 FUNCTION: Kinesin that supports microtubule movement in an ATP-dependent manner and has a minus-end directed polarity. Plays a crucial role in spindle morphogenesis in male meiosis. In mitosis, is required for normal microtubule accumulation at the spindle poles during prophase and may play a role in spindle assembly during prometaphase. {ECO:0000269|PubMed:11973272, ECO:0000269|PubMed:12112142, ECO:0000269|PubMed:12686621, ECO:0000269|PubMed:18088313}.,FUNCTION: Kinesin that supports microtubule movement in an ATP-dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein. During mitosis, is involved in early spindle assembly. Participates in the capture of antiparallel interpolar microtubules and helps in generating force to coalign microtubules. {ECO:0000269|PubMed:15659646, ECO:0000269|PubMed:17220198, ECO:0000269|PubMed:18088313}. MISCELLANEOUS: By measuring the velocity of microtubule translocation, the speed of ATK5 was determined to be 6.30 um/min at 20 degrees Celsius. {ECO:0000305|PubMed:15659646}. ARA:GQT-1964-MONOMER; 89047,89194,87814 Kinesin-like protein KIN-14C (AtKIN14a) (Kinesin-like protein KatA),Kinesin-like protein KIN-14D (AtKIN14b),Kinesin-like protein condensed chromosome kinetochore [GO:0000777]; cytoplasm [GO:0005737]; microtubule [GO:0005874]; minus-end kinesin complex [GO:0005872]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, minus-end-directed [GO:0008569]; microtubule binding [GO:0008017]; anastral spindle assembly involved in male meiosis [GO:0009971]; cell division [GO:0051301]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle microtubule [GO:0005876]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; cell division [GO:0051301]; microtubule cytoskeleton organization [GO:0000226]; microtubule-based movement [GO:0007018]; spindle assembly [GO:0051225],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] TISSUE SPECIFICITY: Slightly expressed in anther lobes with pollen mother cells at anther stage 5. Strongly expressed at anther stage 6 in the tapetum and meiotic cells. Also detected in the gynoecium and the ovule. {ECO:0000269|PubMed:18088313}. locus:2127378;,locus:2115713; AT4G21270,AT4G05190 K10405 kinesin family member C1 Kinesin-like protein KIN-14H,Kinesin-like protein KIN-14G,Kinesin-like protein KIN-14N,Kinesin-like protein (Fragment) Q0J9V3,Q7Y1C8,A3BFT0,A0A0P0WFB5 KN14H_ORYSJ,KN14G_ORYSJ,KN14N_ORYSJ,A0A0P0WFB5_ORYSJ KIN14H Os04g0629700 LOC_Os04g53760 OsJ_16274 OSJNBa0089N06.17,KIN14G Os03g0862200 LOC_Os03g64415 OSJNBa0033P04.11,KIN14N Os07g0105700 LOC_Os07g01490 B1317D11.110 OsJ_22797 P0446F04.141 P0617C02.115,Os04g0629700 OSNPB_040629700 ENOG411DSH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase NA NA NA NA NA NA NA ENOG411DSH4 STOP2 Q0WT24 STOP2_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 (Zinc finger protein STOP2) FUNCTION: Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. 42250 Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 (Zinc finger protein STOP2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to acidic pH [GO:0010447]; response to aluminum ion [GO:0010044]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. locus:2172701; AT5G22890 protein SENSITIVE TO PROTON RHIZOTOXICITY Os08g0562300 protein (Putative transparent testa 1),OSJNBa0019G23.4 protein (Os04g0165200 protein) Q6YYW0,Q7XXA5 Q6YYW0_ORYSJ,Q7XXA5_ORYSJ Os08g0562300 OSNPB_080562300 P0543D10.9 P0604E01.49,Os04g0165200 OSJNBa0019G23.4 OSNPB_040165200 ENOG411DZ9A MQM1.12 F4KE83,F4KE84 F4KE83_ARATH,F4KE84_ARATH DYAD protein 56475,56562 DYAD protein locus:2171666; AT5G23610 NA NA NA NA NA NA NA NA ENOG411DTH5 CHI1,CHI2 P41088,Q9FKW3 CFI1_ARATH,CFI2_ARATH Chalcone--flavonone isomerase 1 (Chalcone isomerase 1) (EC 5.5.1.6) (Protein TRANSPARENT TESTA 5),Chalcone--flavonone isomerase 2 (Chalcone isomerase 2) (EC 5.5.1.6) Yellow seed coat-B. Shirley-Winkel-2001 FUNCTION: Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin. {ECO:0000269|PubMed:1354004}.,FUNCTION: Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin (By similarity). {ECO:0000250}. MISCELLANEOUS: Part of the biosynthetic pathway for all classes of flavonoids, a large class of secondary plant metabolites, many of which are brightly colored. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT3G55120-MONOMER;,ARA:AT5G66220-MONOMER; 5.5.1.6 26596,24465 Chalcone--flavonone isomerase 1 (Chalcone isomerase 1) (EC 5.5.1.6) (Protein TRANSPARENT TESTA 5),Chalcone--flavonone isomerase 2 (Chalcone isomerase 2) (EC 5.5.1.6) endoplasmic reticulum [GO:0005783]; extrinsic component of endoplasmic reticulum membrane [GO:0042406]; nucleus [GO:0005634]; plant-type vacuole membrane [GO:0009705]; chalcone isomerase activity [GO:0045430]; flavonoid biosynthetic process [GO:0009813]; response to auxin [GO:0009733]; response to karrikin [GO:0080167]; response to UV [GO:0009411]; response to UV-B [GO:0010224],chalcone isomerase activity [GO:0045430]; flavonoid biosynthetic process [GO:0009813] TISSUE SPECIFICITY: Mostly expressed in siliques and flowers, and, to a lower extent, in leaves. {ECO:0000269|PubMed:15821875}. locus:2097228;,locus:2156957; AT3G55120,AT5G66220 Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 42'4'6'-tetrahydroxychalcone (also termed chalcone) into naringenin Chalcone--flavonone isomerase (Chalcone isomerase) (EC 5.5.1.6) Q84T92 CFI_ORYSJ CHI CFI Os03g0819600 LOC_Os03g60509 OJ1754_E06.14 FUNCTION: Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin (By similarity). {ECO:0000250}. MISCELLANEOUS: Part of the biosynthetic pathway for all classes of flavonoids, a large class of secondary plant metabolites, many of which are brightly colored. ENOG411DTHW GK3 Q94JM2 GMK3_ARATH Guanylate kinase 3, chloroplastic (AtGK3) (EC 2.7.4.8) (GMP kinase 3) FUNCTION: Essential for recycling GMP and indirectly, cGMP. {ECO:0000269|PubMed:17727616}.; FUNCTION: Required for normal chloroplast development. {ECO:0000269|PubMed:17727616}. MISCELLANEOUS: Plants silencing GK3 have dwarf phenotype and develop albino cotyledons and leaves. {ECO:0000305|PubMed:17727616}. ARA:AT3G06200-MONOMER; 2.7.4.8 31778 Guanylate kinase 3, chloroplastic (AtGK3) (EC 2.7.4.8) (GMP kinase 3) chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; guanylate kinase activity [GO:0004385]; regulation of developmental growth [GO:0048638] locus:2082460; AT3G06200 guanylate Guanylate kinase 2, chloroplastic/mitochondrial (OsGKpm) (EC 2.7.4.8) (GMP kinase 2) (Protein VIRESCENT 2) Q10M74 GMK2_ORYSJ V2 Os03g0320900 LOC_Os03g20460 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions at the permissive temperature of 30 degrees Celsius, but mutant seedlings develop chlorotic leaves with aberrant chloroplasts under the restrictive temperature of 20 degrees Celsius. {ECO:0000269|PubMed:15356324, ECO:0000269|PubMed:17727616}. FUNCTION: Essential for recycling GMP and indirectly, cGMP. Essential for chloroplast differentiation at early stage of leaf development. May not be involved in the synthesis and maintenance of the organellar DNA during leaf development. {ECO:0000269|PubMed:15356324, ECO:0000269|PubMed:17727616}. ENOG411DTHP NHX7 Q9LKW9 NHX7_ARATH Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7) (NHE-7) (Protein SALT OVERLY SENSITIVE 1) Sensitive to salt stress and limited potassium-J. Zhu -2000 FUNCTION: Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap. {ECO:0000269|PubMed:10823923, ECO:0000269|PubMed:11884687, ECO:0000269|PubMed:12034882, ECO:0000269|PubMed:12239394, ECO:0000269|PubMed:12469134, ECO:0000269|PubMed:12805632}. MISCELLANEOUS: Positively regulated by the salt overly sensitive (SOS) signaling pathway that involves the kinase CIPK24/SOS2 and the calcium sensor CBL4/SOS3.; MISCELLANEOUS: Transgenic plants that overexpress NHX7 have enhanced capability to grow on high saline soils. 127188 Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7) (NHE-7) (Protein SALT OVERLY SENSITIVE 1) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium:proton antiporter activity [GO:0015386]; sodium:proton antiporter activity [GO:0015385]; high-affinity potassium ion import [GO:0010163]; regulation of intracellular pH [GO:0051453]; regulation of reactive oxygen species metabolic process [GO:2000377]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to reactive oxygen species [GO:0000302]; response to salt stress [GO:0009651]; sodium ion import across plasma membrane [GO:0098719]; sodium ion transport [GO:0006814] TISSUE SPECIFICITY: More expressed in roots than in shoots. Mostly localized in parenchyma cells at the xylem/symplast boundary in roots, hypocotyls, stems and leaves. Also present in root tips epidermal cells. {ECO:0000269|PubMed:10823923, ECO:0000269|PubMed:11884687}. locus:2041100; AT2G01980 Na H antiporter Os12g0641100 protein,Na+/H+ antiporter (Os12g0641100 protein) (Plasma membrane Na+/H+ antiporter, putative, expressed),Os12g0641100 protein (Fragment) Q0ILJ6,Q5ICN3,A0A0P0YDP3 Q0ILJ6_ORYSJ,Q5ICN3_ORYSJ,A0A0P0YDP3_ORYSJ Os12g0641100 Os12g0641100 OSNPB_120641100,SOS1 Os12g0641100 LOC_Os12g44360 OsJ_37032 OSNPB_120641100,Os12g0641100 OSNPB_120641100 ENOG411DTHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Aquaporin NIP1-4 (NOD26-like intrinsic protein 1-4) (OsNIP1;4) Q5Z9E2 NIP14_ORYSJ NIP1-4 Os06g0552700 LOC_Os06g35930 P0427B07.13 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411DTHM Q9LUB9 Y5813_ARATH BTB/POZ domain-containing protein At5g48130 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 71363 BTB/POZ domain-containing protein At5g48130 protein ubiquitination [GO:0016567] locus:2164763; AT5G48130 BTB POZ domain-containing protein Os07g0584200 protein Q0D540 Q0D540_ORYSJ Os07g0584200 Os07g0584200 OSNPB_070584200 ENOG411DX6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os04g0545000 protein (WRKY transcription factor) (cDNA clone:J033063J05, full insert sequence) Q0JBA9 Q0JBA9_ORYSJ Os04g0545000 Os04g0545000 OSNPB_040545000 ENOG411DX6E Q8VXU5,A0A1I9LRC2,B3H695,Q3ECP1,B3H703 Q8VXU5_ARATH,A0A1I9LRC2_ARATH,B3H695_ARATH,Q3ECP1_ARATH,B3H703_ARATH AT3g53630/F4P12_330,Uncharacterized protein 22208,25829,8387,8430,8388 AT3g53630/F4P12_330,Uncharacterized protein locus:2084076;,locus:4515103419;,locus:2020472;,locus:4515103259; AT3G53630,AT4G18692,AT1G55710,AT3G53342 NA Expressed protein (Os03g0279600 protein) (cDNA clone:006-206-F02, full insert sequence) (cDNA clone:J023079J04, full insert sequence),Os03g0279500 protein (Fragment) Q10N76,A0A0P0VW48 Q10N76_ORYSJ,A0A0P0VW48_ORYSJ Os03g0279600 LOC_Os03g17140 Os03g0279600 OSNPB_030279600,Os03g0279500 OSNPB_030279500 ENOG411DX39 Q9FFU1 CAF2M_ARATH CRS2-associated factor 2, mitochondrial FUNCTION: May be involved for the splicing of group IIB introns in mitochondrions. {ECO:0000250}. 41411 CRS2-associated factor 2, mitochondrial intracellular ribonucleoprotein complex [GO:0030529]; mitochondrion [GO:0005739]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2160195; AT5G54890 CRS2-associated factor 2 CRS2-associated factor 2, mitochondrial,Os08g0188000 protein (Fragment),Os08g0188600 protein Q0J7J7,A0A0P0XCM5,A0A0N7KPD9 CAF2M_ORYSJ,A0A0P0XCM5_ORYSJ,A0A0N7KPD9_ORYSJ Os08g0188000 LOC_Os08g08860 P0020B10.28,Os08g0188000 OSNPB_080188000,Os08g0188600 OSNPB_080188600 FUNCTION: May be involved for the splicing of group IIB introns in mitochondrions. {ECO:0000250}. ENOG411DX38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA emp24/gp25L/p24 family/GOLD Os09g0453200 protein (Putative transmembrane trafficking protein) Q67UZ5 Q67UZ5_ORYSJ P0488D02.20 Os09g0453200 OSNPB_090453200 ENOG411DX31 RH38 Q93ZG7 RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 (EC 3.6.4.13) (Low expression of osmotically-responsive genes 4 protein) (Protein CRYOPHYTE) Early flowering; Resistant to freezing; Sensitive to elevated temperatures; Germination sensitive to ABA-J. Zhu-2005 FUNCTION: ATP-dependent RNA helicase essential for mRNA export from the nucleus. Plays an important role in the positive regulation of CBF/DREB transcription factors. {ECO:0000269|PubMed:12165572, ECO:0000269|PubMed:15598798}. 3.6.4.13 55384 DEAD-box ATP-dependent RNA helicase 38 (EC 3.6.4.13) (Low expression of osmotically-responsive genes 4 protein) (Protein CRYOPHYTE) cytoplasm [GO:0005737]; nuclear envelope [GO:0005635]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; RNA-dependent ATPase activity [GO:0008186]; poly(A)+ mRNA export from nucleus [GO:0016973]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to heat [GO:0009408]; RNA secondary structure unwinding [GO:0010501] TISSUE SPECIFICITY: Constitutively expressed. {ECO:0000269|PubMed:15598798}. locus:2101993; AT3G53110 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 38 (EC 3.6.4.13) Q10RI7 RH38_ORYSJ Os03g0158200 LOC_Os03g06220 OJ1134F05.6 FUNCTION: ATP-dependent RNA helicase essential for mRNA export from the nucleus. Plays an important role in the positive regulation of CBF/DREB transcription factors (By similarity). {ECO:0000250}. ENOG411DX30 F15B8.190 Q9M9S1,Q9SVX6 Q9M9S1_ARATH,Q9SVX6_ARATH F14L17.20 protein (Glyoxal oxidase-related protein),Glyoxal oxidase-related protein (Uncharacterized protein F15B8.190) 62765,61026 F14L17.20 protein (Glyoxal oxidase-related protein),Glyoxal oxidase-related protein (Uncharacterized protein F15B8.190) integral component of membrane [GO:0016021] locus:2012582;,locus:2076696; AT1G14430,AT3G57620 Domain of unknown function (DUF1929) NA NA NA NA NA NA NA ENOG411DX33 F4HXG0,A0A1P8ANP2,A0A1P8ANP5 F4HXG0_ARATH,A0A1P8ANP2_ARATH,A0A1P8ANP5_ARATH DNA ligase-like protein 88283,88543,88775 DNA ligase-like protein ligase activity [GO:0016874] locus:2025137; AT1G75150 NA Os03g0809400 protein A0A0N7KI94 A0A0N7KI94_ORYSJ Os03g0809400 OSNPB_030809400 ENOG411DX32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os04g0573900 protein (cDNA clone:001-036-C03, full insert sequence),Cytochrome P450 family protein, expressed (Cytochrome P450-like protein) (Os10g0525000 protein) (cDNA clone:J023012I12, full insert sequence),Cytochrome P450 family protein, expressed (Os10g0524700 protein),Cytochrome P450 family protein (Os10g0525200 protein),Os10g0525000 protein (Fragment),Os04g0573900 protein B7E6Q0,Q8S7S6,Q7G234,Q7G231,A0A0P0XWG8,A0A0N7KJJ5 B7E6Q0_ORYSJ,Q8S7S6_ORYSJ,Q7G234_ORYSJ,Q7G231_ORYSJ,A0A0P0XWG8_ORYSJ,A0A0N7KJJ5_ORYSJ Os04g0573900 OSNPB_040573900,LOC_Os10g38110 Os10g0525000 OsJ_32218 OSJNBb0005J14.27 OSNPB_100525000,Os10g0524700 LOC_Os10g38090 OSNPB_100524700,Os10g0525200 LOC_Os10g38120 OSNPB_100525200,Os10g0525000 OSNPB_100525000 ENOG411DX35 PAT18 Q9M115 ZDH16_ARATH Protein S-acyltransferase 18 (EC 2.3.1.225) (Probable palmitoyltransferase At4g01730) (Zinc finger DHHC domain-containing protein At4g01730) FUNCTION: S-acyltransferase involved in protein lipid modification. {ECO:0000269|PubMed:22968831, ECO:0000269|Ref.3}. 2.3.1.225; 2.3.1.225 57904 Protein S-acyltransferase 18 (EC 2.3.1.225) (Probable palmitoyltransferase At4g01730) (Zinc finger DHHC domain-containing protein At4g01730) cytoplasmic vesicle membrane [GO:0030659]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] DEVELOPMENTAL STAGE: Highly expressed during bolting. {ECO:0000269|PubMed:22968831}. locus:2133447; AT4G01730 zinc finger S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q2QUH9 Q2QUH9_ORYSJ LOC_Os12g16210 Os12g0263100 OsJ_17637 OSNPB_120263100 ENOG411DX34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Cyclin-A1-1 (G2/mitotic-specific cyclin-A1-1) (CycA1;1),Cyclin-A1-3 (G2/mitotic-specific cyclin-A1-3) (CycA1;3),Cyclin-A1-2 (G2/mitotic-specific cyclin-A1-2) (CycA1;2),Cyclin-A1-4 (G2/mitotic-specific cyclin-A1-4) (CycA1;4),Os12g0298950 protein (Fragment),Os05g0237100 protein,Os01g0233100 protein Q7F830,Q0INT0,Q0JPA4,Q0DJR9,A0A0P0Y9L4,A0A0N7KKD9,A0A0P0V089 CCA11_ORYSJ,CCA13_ORYSJ,CCA12_ORYSJ,CCA14_ORYSJ,A0A0P0Y9L4_ORYSJ,A0A0N7KKD9_ORYSJ,A0A0P0V089_ORYSJ CYCA1-1 CYCA1 Os01g0233500 LOC_Os01g13260 P0702F03.11,CYCA1-3 LOC_Os12g20324,CYCA1-2 Os01g0233100 Os01g0233300 LOC_Os01g13229 P0702F03.7,CYCA1-4 Os05g0237100 LOC_Os05g14730 OJ1384_A02.11,Os12g0298950 OSNPB_120298950,Os05g0237100 OSNPB_050237100,Os01g0233100 OSNPB_010233100 FUNCTION: Involved in the control of the cell cycle at the G2/M (mitosis) transition. {ECO:0000269|PubMed:10517318, ECO:0000269|PubMed:10987556}. ENOG411DX37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os01g0949800 protein (Putative glutathione S-transferase) (cDNA clone:002-113-B12, full insert sequence),Os03g0595600 protein (Fragment) Q5JKY4,A0A0P0VZU7 Q5JKY4_ORYSJ,A0A0P0VZU7_ORYSJ Os01g0949800 Os01g0949800 B1147A04.22 OSNPB_010949800,Os03g0595600 OSNPB_030595600 ENOG411DX36 MYOB7,F26K24.14 Q9FG14,Q9SF14 MYOB7_ARATH,Q9SF14_ARATH Myosin-binding protein 7,F26K24.14 protein (Uncharacterized protein At3g11850) FUNCTION: Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment. {ECO:0000269|PubMed:23995081}. 59427,57773 Myosin-binding protein 7,F26K24.14 protein (Uncharacterized protein At3g11850) integral component of membrane [GO:0016021]; transport vesicle [GO:0030133]; myosin binding [GO:0017022] locus:2144158;,locus:2081521; AT5G06560,AT3G11850 DUF593 domain containing protein expressed Expressed protein (Os03g0650800 protein),Os11g0575900 protein (Fragment),Os12g0488700 protein Q7XZZ5,A0A0P0Y3W0,A0A0P0YAC9 Q7XZZ5_ORYSJ,A0A0P0Y3W0_ORYSJ,A0A0P0YAC9_ORYSJ Os03g0650800 LOC_Os03g44800 Os03g0650800 OSJNBa0093M23.2 OSNPB_030650800,Os11g0575900 OSNPB_110575900,Os12g0488700 OSNPB_120488700 ENOG411DX6W PP2AB2 Q39247 2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AtB beta) (PP2A, subunit B, beta isoform) FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000250}. R-ATH-69231;R-ATH-69273;R-ATH-975957; 56275 Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AtB beta) (PP2A, subunit B, beta isoform) cytosol [GO:0005829]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; developmental process [GO:0032502]; mitotic cell cycle [GO:0000278]; peptidyl-serine dephosphorylation [GO:0070262]; protein dephosphorylation [GO:0006470] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:8756607}. locus:2007963; AT1G17720 Serine threonine protein phosphatase 2A 55 kDa regulatory subunit B Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (PP2A, subunit B, alpha isoform),Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (PP2A, subunit B, beta isoform),Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B,Os06g0563300 protein (Fragment) Q5Z8Z7,Q0E2P1,A0A0P0V4X3,A0A0P0WY29 2ABA_ORYSJ,2ABB_ORYSJ,A0A0P0V4X3_ORYSJ,A0A0P0WY29_ORYSJ Os06g0563300 LOC_Os06g36770 P0656E03.30,Os02g0224200 LOC_Os02g13110 OsJ_005772 P0470A03.14,Os01g0600200 OSNPB_010600200,Os06g0563300 OSNPB_060563300 FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000250}. ENOG411DX3I Q0WM93,F4JRR2,A0A1P8ATI6,A0A1P8B512,A0A1P8B505,F4HZ81,A0A1P8B504,F4HZ82,F4HX45 Q0WM93_ARATH,F4JRR2_ARATH,A0A1P8ATI6_ARATH,A0A1P8B512_ARATH,A0A1P8B505_ARATH,F4HZ81_ARATH,A0A1P8B504_ARATH,F4HZ82_ARATH,F4HX45_ARATH AAA-type ATPase family protein (Uncharacterized protein At4g02480),P-loop containing nucleoside triphosphate hydrolases superfamily protein,AAA-type ATPase family protein ARA:AT4G02480-MONOMER; 136524,124150,114241,123923,120576,132890,123422,135990,114911 AAA-type ATPase family protein (Uncharacterized protein At4g02480),P-loop containing nucleoside triphosphate hydrolases superfamily protein,AAA-type ATPase family protein nucleus [GO:0005634]; ATP binding [GO:0005524],nucleus [GO:0005634]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787],ATP binding [GO:0005524],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2133298;,locus:2126783;,locus:2024655;,locus:2018102; AT4G02480,AT4G24860,AT1G02890,AT1G62130 AAA-type ATPase family protein Os11g0661400 protein (Fragment) Q0IR92 Q0IR92_ORYSJ Os11g0661400 OSNPB_110661400 ENOG411DX3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HECTc Os05g0122400 protein A0A0P0WHC1 A0A0P0WHC1_ORYSJ Os05g0122400 OSNPB_050122400 ENOG411DX3K Q9LQI7,A0A1P8APK0,Q9C9E0,F4IDC0,A0A1P8APH2,F4I7I6 CIA30_ARATH,A0A1P8APK0_ARATH,Q9C9E0_ARATH,F4IDC0_ARATH,A0A1P8APH2_ARATH,F4I7I6_ARATH Probable complex I intermediate-associated protein 30,NADH:ubiquinone oxidoreductase intermediate-associated protein 30,NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (Uncharacterized protein T10D10.11) FUNCTION: Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). {ECO:0000250}. 25248,16239,24290,25486,21227,26024 Probable complex I intermediate-associated protein 30,NADH:ubiquinone oxidoreductase intermediate-associated protein 30,NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (Uncharacterized protein T10D10.11) mitochondrion [GO:0005739] locus:2193937;,locus:2029100; AT1G17350,AT1G72420 Complex I intermediate-associated protein Auxin-induced-related / indole-3-acetic acid induced-related-like (Os01g0727400 protein) (cDNA clone:J013038H22, full insert sequence) Q5JM48 Q5JM48_ORYSJ Os01g0727400 Os01g0727400 OSNPB_010727400 P0042A10.37 P0456A01.1 ENOG411DX3J AHL17,AHL28 Q9LTA2,Q9M9R4,A0A1P8AR37 AHL17_ARATH,AHL28_ARATH,A0A1P8AR37_ARATH AT-hook motif nuclear-localized protein 17,AT-hook motif nuclear-localized protein 28,AT-hook motif nuclear-localized protein FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}.,FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000256|PIRNR:PIRNR016021}. 29390,21459,23558 AT-hook motif nuclear-localized protein 17,AT-hook motif nuclear-localized protein 28,AT-hook motif nuclear-localized protein nucleus [GO:0005634]; AT DNA binding [GO:0003680]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2157007;,locus:2012537; AT5G49700,AT1G14490 DNA-binding protein Os09g0464300 protein,DNA-binding protein-like (Os08g0478466 protein) A3BZP1,Q6ZJC3 A3BZP1_ORYSJ,Q6ZJC3_ORYSJ Os09g0464300 OsJ_29669 OSNPB_090464300,Os08g0478466 Os08g0478466 OJ1666_A04.23 OSNPB_080478466 ENOG411DX3M O64628,Q9LSU4,A0A1I9LSC3 TXND9_ARATH,Q9LSU4_ARATH,A0A1I9LSC3_ARATH Thioredoxin domain-containing protein 9 homolog,Thioredoxin superfamily protein 24451,24443,23918 Thioredoxin domain-containing protein 9 homolog,Thioredoxin superfamily protein cytoplasm [GO:0005737]; cell redox homeostasis [GO:0045454]; queuosine biosynthetic process [GO:0008616],cell [GO:0005623]; cell redox homeostasis [GO:0045454] locus:2044495;,locus:2094503; AT2G18990,AT3G25580 Thioredoxin domain-containing protein 9 Os08g0250700 protein (Putative ATP binding protein associated with cell differentiation Protein 1-4) (cDNA clone:002-156-B06, full insert sequence) (cDNA clone:J033084O18, full insert sequence) Q6YW09 Q6YW09_ORYSJ Os08g0250700 Os08g0250700 OSJNBa0012K14.33 OSNPB_080250700 ENOG411DX3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0572300 protein A0A0N7KFJ0 A0A0N7KFJ0_ORYSJ Os02g0572300 OSNPB_020572300 ENOG411DX3C O22288,Q8W487,Q9FI87,O82350,Q8LCT2 Y2979_ARATH,YB95_ARATH,Q9FI87_ARATH,O82350_ARATH,Q8LCT2_ARATH Uncharacterized protein At2g39790, mitochondrial,Uncharacterized protein At2g39795, mitochondrial,AT5g05990/K18J17_19 (Emb|CAB81585.1) (Mitochondrial glycoprotein family protein),Mitochondrial glycoprotein family protein (Uncharacterized protein At2g46190),At3g55605 (Mitochondrial glycoprotein family protein) (Uncharacterized protein At3g55605) 27135,28061,30069,23929,29013 Uncharacterized protein At2g39790, mitochondrial,Uncharacterized protein At2g39795, mitochondrial,AT5g05990/K18J17_19 (Emb|CAB81585.1) (Mitochondrial glycoprotein family protein),Mitochondrial glycoprotein family protein (Uncharacterized protein At2g46190),At3g55605 (Mitochondrial glycoprotein family protein) (Uncharacterized protein At3g55605) mitochondrial matrix [GO:0005759],mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739] locus:2063969;,locus:505006310;,locus:2153649;,locus:2062964;,locus:505006400; AT2G39790,AT2G39795,AT5G05990,AT2G46190,AT3G55605 Mitochondrial glycoprotein family protein Os01g0143300 protein,Os01g0143700 protein Q9FU80,Q9FU75 Q9FU80_ORYSJ,Q9FU75_ORYSJ Os01g0143300 OSNPB_010143300 P0019D06.31 P0024G09.19,Os01g0143700 OsJ_00334 OSNPB_010143700 P0019D06.38 P0024G09.26 ENOG411DX3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Calcium-dependent protein kinase 27 (OsCDPK27) (OsCPK27) (EC 2.7.11.1),Os12g0487250 protein Q2QQR2,B9GD63 CDPKR_ORYSJ,B9GD63_ORYSJ CPK27 Os12g0486600 LOC_Os12g30150 OsJ_36113,Os12g0487250 OsJ_36117 OSNPB_120487250 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411DX3E MXI22.4 Q67Y06,Q0WSU9,A0A1P8B673,A0A1P8B669,F4JRQ4,B3H756,F4JRQ6 Q67Y06_ARATH,Q0WSU9_ARATH,A0A1P8B673_ARATH,A0A1P8B669_ARATH,F4JRQ4_ARATH,B3H756_ARATH,F4JRQ6_ARATH At4g24810 (Protein kinase superfamily protein) (mRNA, clone: RAFL25-20-E08),At5g50330 (Protein kinase superfamily protein) (Uncharacterized protein At5g50330),Protein kinase superfamily protein 49341,54629,35253,35879,54635,52855,50215 At4g24810 (Protein kinase superfamily protein) (mRNA, clone: RAFL25-20-E08),At5g50330 (Protein kinase superfamily protein) (Uncharacterized protein At5g50330),Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672],plastid [GO:0009536]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],chloroplast [GO:0009507]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],kinase activity [GO:0016301] locus:2177487;,locus:2126793; AT4G24810,AT5G50330 ABC1 family ABC1-like (Os01g0904200 protein) (cDNA clone:J013153C13, full insert sequence),Os01g0904200 protein Q5N6W3,A0A0N7KE93 Q5N6W3_ORYSJ,A0A0N7KE93_ORYSJ P0551C06.44-1 Os01g0904200 OSNPB_010904200,Os01g0904200 OSNPB_010904200 ENOG411DX3G Q9ZVZ4 Q9ZVZ4_ARATH C-8 sterol isomerase (T25N20.9) 44492 C-8 sterol isomerase (T25N20.9) integral component of membrane [GO:0016021]; isomerase activity [GO:0016853] locus:2201086; AT1G05440 ERG2 and Sigma1 receptor like protein Os03g0747100 protein (Fragment) A0A0P0W2Z3 A0A0P0W2Z3_ORYSJ Os03g0747100 OSNPB_030747100 ENOG411DX3Y A0A1P8AUW6,A0A1P8AUZ1,A0A1P8AUW4,F4HTS4 A0A1P8AUW6_ARATH,A0A1P8AUZ1_ARATH,A0A1P8AUW4_ARATH,F4HTS4_ARATH Obscurin-like protein 85460,63590,67134,89165 Obscurin-like protein locus:2031556; AT1G73970 NA Os02g0123400 protein A0A0P0VE89 A0A0P0VE89_ORYSJ Os02g0123400 OSNPB_020123400 ENOG411DX3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Purple acid phosphatase (EC 3.1.3.2) (Fragment) A0A0P0XPV5 A0A0P0XPV5_ORYSJ Os09g0505900 OSNPB_090505900 ENOG411DX3P VPS54 F4JT76 VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic (AtVPS54) DISRUPTION PHENOTYPE: Lethal when homozygous. In hemizygous plants, male-specific transmission defect. {ECO:0000269|PubMed:18583349}. Reduced transmission of allele through pollen. Homozygotes cannot be recovered. Suspected embryo lethality of homozygotes because reduced seed set is observed in siliques of plants segregating homozygotes.Mature pollen grains appear WT suggesting that defect occurs at a later stage. Vegetative development appears normal.,Reduced transmission through both male and female gametophytes. Mature pollen is similar to WT. Lower seed set than WT. Vegetative development is similar to WT. Male and female gametophyte defective; Embryo defective (inferred)-S. Bonhomme-2008 FUNCTION: Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Probably involved in pollen tube elongation and other polar growth. {ECO:0000250, ECO:0000269|PubMed:18583349}. 113865 Vacuolar protein sorting-associated protein 54, chloroplastic (AtVPS54) chloroplast [GO:0009507]; cytosol [GO:0005829]; GARP complex [GO:0000938]; Golgi membrane [GO:0000139]; syntaxin binding [GO:0019905]; Golgi to vacuole transport [GO:0006896]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147] TISSUE SPECIFICITY: Present in pollen. Mostly expressed in roots and flower buds, and, at lower levels, in vegetative tissues and mature flowers. {ECO:0000269|PubMed:15235115}. locus:2122945; AT4G19490 Vacuolar protein sorting-associated protein Os04g0212200 protein A0A0P0W7J0 A0A0P0W7J0_ORYSJ Os04g0212200 OSNPB_040212200 ENOG411DX3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules (By similarity) Putative 12-oxophytodienoate reductase 12 (EC 1.3.1.-) (OPDA-reductase 12) (OsOPR12),Putative 12-oxophytodienoate reductase 13 (EC 1.3.1.-) (OPDA-reductase 13) (OsOPR13),Os04g0443750 protein B9FFD2,B9FFD3,A0A0P0WAK3 OPR12_ORYSJ,OPR13_ORYSJ,A0A0P0WAK3_ORYSJ OPR12 OPR5 Os04g0443750 OsJ_14924,OPR13 OPR9 Os04g0443801 OsJ_14925,Os04g0443750 OSNPB_040443750 FUNCTION: Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}. ENOG411DX3U Q9LW26,A0A1I9LQB7,F4JDQ6 Y3684_ARATH,A0A1I9LQB7_ARATH,F4JDQ6_ARATH Acyltransferase-like protein At3g26840, chloroplastic (EC 2.3.1.-),Esterase/lipase/thioesterase family protein 2.3.1.- 78609,62124,71812 Acyltransferase-like protein At3g26840, chloroplastic (EC 2.3.1.-),Esterase/lipase/thioesterase family protein chloroplast [GO:0009507]; plastoglobule [GO:0010287]; diacylglycerol O-acyltransferase activity [GO:0004144]; phytol metabolic process [GO:0033306]; triglyceride biosynthetic process [GO:0019432],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],plastoglobule [GO:0010287]; diacylglycerol O-acyltransferase activity [GO:0004144]; phytol metabolic process [GO:0033306] locus:2088404;,locus:2088474; AT3G26840,AT3G26820 Esterase lipase thioesterase family protein NA NA NA NA NA NA NA ENOG411DX3T AMI1 Q9FR37 AMI1_ARATH Amidase 1 (AtAMI1) (EC 3.5.1.4) (Translocon at the outer membrane of chloroplasts 64-I) (AtTOC64-I) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17655652}. No visible phenotype. FUNCTION: Amidase involved in auxin biosynthesis. Converts indole-3-acetamide to indole-3-acetate (PubMed:12620340, PubMed:27135507). Converts phenyl-2-acetamide (PAM) to phenyl-2-acetate. Substrate preference is PAM > IAM (PubMed:27135507). Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid (PubMed:12620340). {ECO:0000269|PubMed:12620340, ECO:0000269|PubMed:27135507}. ARA:AT1G08980-MONOMER; 3.5.1.4 45056 Amidase 1 (AtAMI1) (EC 3.5.1.4) (Translocon at the outer membrane of chloroplasts 64-I) (AtTOC64-I) cytoplasm [GO:0005737]; cytosol [GO:0005829]; amidase activity [GO:0004040]; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810]; indoleacetamide hydrolase activity [GO:0043864]; indoleacetic acid biosynthetic process [GO:0009684] TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flower buds. Lower levels in roots, stems and siliques. {ECO:0000269|PubMed:12620340, ECO:0000269|PubMed:14741350, ECO:0000269|PubMed:16738862, ECO:0000269|PubMed:17655652}. locus:2036029; AT1G08980 Amidase Amidase 1 (OsAMI1) (EC 3.5.1.4),Os04g0117800 protein (Os04g0117900 protein) (cDNA, clone: J100072C12, full insert sequence) Q7XTK3,A3AQC6 AMI1_ORYSJ,A3AQC6_ORYSJ AMI1 Os04g0118100 LOC_Os04g02780 OSJNBa0020P07.1,Os04g0117900 Os04g0117800 OsJ_13589 OSNPB_040117900 FUNCTION: Amidase involved in auxin biosynthesis (Probable). Converts indole-3-acetamide (IAM) to indole-3-acetate, and phenyl-2-acetamide (PAM) to phenyl-2-acetate. Substrate preference is PAM > IAM (PubMed:27135507). {ECO:0000269|PubMed:27135507, ECO:0000305|PubMed:27135507}. ENOG411DU70 ALB3,ALB3L1,ALB4 Q8LBP4,Q9FYL3,F4I9A9,F4IJM1,B3H4X4 ALB3_ARATH,ALB31_ARATH,F4I9A9_ARATH,F4IJM1_ARATH,B3H4X4_ARATH Inner membrane protein ALBINO3, chloroplastic,ALBINO3-like protein 1, chloroplastic (Arabidopsis thaliana envelope membrane integrase) (Protein ALBINA 4) (Ath4) (Protein ARTEMIS),OxaA/YidC-like membrane insertion protein,63 kDa inner membrane family protein Mutant plants have altered shape of chloroplasts. Plastids somewhat larger (~20%) and more spherical in appearance compared to that of wild-type plants of the same stage and in the same tissue. The grana stacks in mesophyll cells of mutant plants are less appressed than in the wild-type chloroplasts whereas the structure of the stacks is not affected.,No visible phenotype. Pale green seeds and seedlings-G. Coupland-1997,Slow growth; Early flowering; Arrested chloroplast division-D. Schunemann-2006 FUNCTION: Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY. {ECO:0000269|PubMed:10636840, ECO:0000269|PubMed:11524428, ECO:0000269|PubMed:11891220, ECO:0000269|PubMed:9165749}.,FUNCTION: Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Plays a role in the accumulation of some cytochrome b6f components in the thylakoid membrane (PubMed:26265777). Required for the assembly and/or stability of the F(1)F(0) ATP synthase in chloroplast thylakoid membranes. Functions to stabilize or promote assembly of F(1) during its attachment to the membrane-embedded F(0) part (PubMed:19995738). Participates with STIC2 in thylakoid protein targeting. May function with a specific subset of thylakoidal proteins (PubMed:28684427). {ECO:0000269|PubMed:19995738, ECO:0000269|PubMed:26265777, ECO:0000269|PubMed:28684427}. ARA:AT2G28800-MONOMER;MetaCyc:AT2G28800-MONOMER; 50245,55188,51173,47072,36956 Inner membrane protein ALBINO3, chloroplastic,ALBINO3-like protein 1, chloroplastic (Arabidopsis thaliana envelope membrane integrase) (Protein ALBINA 4) (Ath4) (Protein ARTEMIS),OxaA/YidC-like membrane insertion protein,63 kDa inner membrane family protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; protein complex [GO:0043234]; protein domain specific binding [GO:0019904]; protein heterotrimerization [GO:0070208]; protein import into chloroplast thylakoid membrane [GO:0045038]; protein insertion into membrane [GO:0051205]; regulation of cell aging [GO:0090342]; thylakoid membrane organization [GO:0010027],chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; chloroplast organization [GO:0009658]; protein insertion into membrane [GO:0051205]; protein localization to chloroplast [GO:0072598],integral component of membrane [GO:0016021]; protein insertion into membrane [GO:0051205] TISSUE SPECIFICITY: Mainly expressed in organs that contain green tissues such as leaves, flower buds and stems. {ECO:0000269|PubMed:9165749}.,TISSUE SPECIFICITY: Highly expressed in green tissues. {ECO:0000269|PubMed:16595657}. locus:2053230;,locus:2809836; AT2G28800,AT1G24490 inner membrane protein PPF-1 Os01g0151200 protein (Putative PPF-1 protein),Os03g0844700 protein (Fragment),Os01g0151200 protein (Fragment) Q5ZEK1,A0A0P0W5Y9,A0A0P0UY29,A0A0N7KCC4 Q5ZEK1_ORYSJ,A0A0P0W5Y9_ORYSJ,A0A0P0UY29_ORYSJ,A0A0N7KCC4_ORYSJ P0009G03.18-1 Os01g0151200 OSNPB_010151200,Os03g0844700 OSNPB_030844700,Os01g0151200 OSNPB_010151200 ENOG411DU72 F4ISQ7 TOP3B_ARATH DNA topoisomerase 3-beta (EC 5.99.1.2) FUNCTION: Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). {ECO:0000250}. 5.99.1.2 97021 DNA topoisomerase 3-beta (EC 5.99.1.2) nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type I activity [GO:0003917]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; DNA topological change [GO:0006265] locus:2045517; AT2G32000 dna topoisomerase DNA topoisomerase 3-beta (EC 5.99.1.2) Q0J0S6 TOP3B_ORYSJ TOP3B Os09g0500600 LOC_Os09g32450 FUNCTION: Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). {ECO:0000250}. ENOG411DU73 EXPA7 Q9LN94 EXPA7_ARATH Expansin-A7 (AtEXPA7) (Alpha-expansin-7) (At-EXP7) (AtEx7) (Ath-ExpAlpha-1.26) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 28791 Expansin-A7 (AtEXPA7) (Alpha-expansin-7) (At-EXP7) (AtEx7) (Ath-ExpAlpha-1.26) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664]; root hair elongation [GO:0048767] locus:2034680; AT1G12560 atexpa7 exp7 atexp7 athexp alpha 1.26 expa7 atexpa7 (arabidopsis thaliana expansin a7) Putative expansin-A30 (Alpha-expansin-30) (OsEXP30) (OsEXPA30) (OsaEXPa1.32) Q8W2X8 EXP30_ORYSJ EXPA30 EXP30 Os10g0535900 LOC_Os10g39110 OsJ_32280 OSJNBb0060I05.13 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DU74 SAMTL Q8VZP7 Q8VZP7_ARATH Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein) 90627 Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; plastid [GO:0009536]; calcium ion binding [GO:0005509]; S-adenosyl-L-methionine transmembrane transporter activity [GO:0000095]; mitochondrial transport [GO:0006839] locus:2039225; AT2G35800 mitochondrial substrate carrier family protein Mitochondrial substrate carrier family protein, putative, expressed (Os11g0103700 protein) (cDNA clone:J033061A09, full insert sequence),Mitochondrial substrate carrier family protein, putative, expressed (Os12g0103000 protein) (cDNA clone:J013154A11, full insert sequence) Q2RBP8,Q2QYX8 Q2RBP8_ORYSJ,Q2QYX8_ORYSJ Os11g0103700 LOC_Os11g01270 Os11g0103700 OsJ_32642 OSNPB_110103700,LOC_Os12g01240 Os12g0103000 OSNPB_120103000 ENOG411DU75 MCM4 Q0WVF5 MCM4_ARATH DNA replication licensing factor MCM4 (EC 3.6.4.12) (Minichromosome maintenance protein 4) (AtMCM4) FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69052;R-ATH-69300; Meiosis - yeast (04113),DNA replication (03030),Cell cycle - yeast (04111),Cell cycle (04110) 3.6.4.12 93656 DNA replication licensing factor MCM4 (EC 3.6.4.12) (Minichromosome maintenance protein 4) (AtMCM4) cytosol [GO:0005829]; MCM complex [GO:0042555]; THO complex [GO:0000347]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; metal ion binding [GO:0046872]; cell cycle [GO:0007049]; DNA replication initiation [GO:0006270]; DNA unwinding involved in DNA replication [GO:0006268] TISSUE SPECIFICITY: Expressed in shoot apex and flower buds. {ECO:0000269|PubMed:19357199}. locus:2042674; AT2G16440 DNA replication licensing factor DNA replication licensing factor MCM4 (EC 3.6.4.12) (Minichromosome maintenance protein 4) (OsMCM4) Q5JKB0 MCM4_ORYSJ MCM4 Os01g0544450 LOC_Os01g36390 OSJNBa0051H17.26 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. ENOG411DU77 DTX42,DTX43 Q9SYD6,Q9SFB0,A0A1P8AU65 DTX42_ARATH,DTX43_ARATH,A0A1P8AU65_ARATH Protein DETOXIFICATION 42 (AtDTX42) (Aluminum-activated citrate transporter) (AtMATE) (FRD-like protein) (Multidrug and toxic compound extrusion protein 42) (MATE protein 42),Protein DETOXIFICATION 43 (AtDTX43) (Multidrug and toxic compound extrusion protein 43) (MATE protein 43) (Protein FERRIC REDUCTASE DEFECTIVE 3) (AtFRD3) (Protein MANGANESE ACCUMULATOR 1),MATE efflux family protein DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Strong reduction of aluminum-activated citrate release and small decrease in aluminum tolerance. {ECO:0000269|PubMed:18826429}.,DISRUPTION PHENOTYPE: Chlorotic (PubMed:12172022, PubMed:8754685, PubMed:18826429, PubMed:21742986). Constitutive expression of strategy I iron deficiency response and accumulation of iron, manganese and zinc in shoots. No reduction in aluminum tolerance (PubMed:12172022, PubMed:18826429). Accumulation of Mn, Cu, Zn and Mg in leaves and accumulation of Fe in roots (PubMed:8754685). Altered pollen development (PubMed:21742986). {ECO:0000269|PubMed:12172022, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:21742986, ECO:0000269|PubMed:8754685}. defective in iron translocation; chlorotic plants; expression of iron deficiency responses under conditions of iron sufficiency; overaccumulation of iron and other metals (plants accumulate approximately two-fold excess iron four-fold excess manganesse and two-fold excess zinc in their shoots); detached roots are capable of repressing iron uptake responses when cultured under iron-sufficient conditions; when shoots are appropriately supplied with iron they regreen and the plants are capable of correctly regulating root iron uptake responses; isolated protoplasts have lower iron levels than those from wild type plants; plants accumulate abnormal levels of ferric iron in their root vasculature FRD3 is expressed in the pericycle and other vascular cylinder cells in the mature portion of the root; lacks trichomes on stems and leaves.,constitutive ferric chelate reductase activity chlorotic Elevated iron, manganese, and zinc levels-E. Rogers-2002 FUNCTION: Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity. {ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:22413742}.,FUNCTION: Citrate transporter responsible for loading citrate into xylem tissues, which helps facilitate iron transport to shoots (PubMed:12172022, PubMed:15310833, PubMed:17351051, PubMed:18826429). Mediates the citrate release in the apoplastic spaces during plant development allowing iron nutrition between symplastically disconnected tissues (PubMed:21742986). {ECO:0000269|PubMed:12172022, ECO:0000269|PubMed:15310833, ECO:0000269|PubMed:17351051, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:21742986}. MISCELLANEOUS: Acts in parallel but independently of ALMT1, an aluminum-activated root malate transporter. {ECO:0000303|PubMed:18826429}. 55374,55946,42945 Protein DETOXIFICATION 42 (AtDTX42) (Aluminum-activated citrate transporter) (AtMATE) (FRD-like protein) (Multidrug and toxic compound extrusion protein 42) (MATE protein 42),Protein DETOXIFICATION 43 (AtDTX43) (Multidrug and toxic compound extrusion protein 43) (MATE protein 43) (Protein FERRIC REDUCTASE DEFECTIVE 3) (AtFRD3) (Protein MANGANESE ACCUMULATOR 1),MATE efflux family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; antiporter activity [GO:0015297]; citrate transmembrane transporter activity [GO:0015137]; drug transmembrane transporter activity [GO:0015238]; citrate transport [GO:0015746]; response to aluminum ion [GO:0010044],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; antiporter activity [GO:0015297]; citrate transmembrane transporter activity [GO:0015137]; drug transmembrane transporter activity [GO:0015238]; metal ion transmembrane transporter activity [GO:0046873]; transporter activity [GO:0005215]; cellular iron ion homeostasis [GO:0006879]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; cellular response to phosphate starvation [GO:0016036]; iron ion homeostasis [GO:0055072]; metal ion transport [GO:0030001]; response to abscisic acid [GO:0009737],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] DEVELOPMENTAL STAGE: Expressed during embryogenesis and during the early stages of germination. {ECO:0000269|PubMed:21742986}. TISSUE SPECIFICITY: Expressed in roots, but not in shoots (PubMed:18826429, PubMed:22413742). Detected in the mature regions of the root, extending from above the root-hair region to the root-shoot junction (PubMed:22413742). {ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:22413742}.,TISSUE SPECIFICITY: Expressed in roots in the pericycle and cells internal to the pericycle and surrounding the vascular tissue (PubMed:12172022, PubMed:15310833). Also expressed in seed and flower (PubMed:21742986). {ECO:0000269|PubMed:12172022, ECO:0000269|PubMed:15310833, ECO:0000269|PubMed:21742986}. locus:2008236;,locus:2077477; AT1G51340,AT3G08040 Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),MATE efflux family protein, putative (Os12g0438250 protein),MATE efflux family protein, putative (Os12g0156700 protein),Os10g0206800 protein (Fragment),Os05g0409600 protein Q10PY7,Q2QS67,Q8S6Q1,Q2QXH3,A0A0P0XT75,A0A0P0VC55,A0A0P0WMC7 Q10PY7_ORYSJ,Q2QS67_ORYSJ,Q8S6Q1_ORYSJ,Q2QXH3_ORYSJ,A0A0P0XT75_ORYSJ,A0A0P0VC55_ORYSJ,A0A0P0WMC7_ORYSJ LOC_Os03g11734 Os03g0216700 OSNPB_030216700,Os12g0438250 LOC_Os12g25160 OsJ_35960 OSNPB_120438250,Os10g0206800 LOC_Os10g13940 Os10g0206800 OJ1004_F02.11 OSNPB_100206800,Os12g0156700 LOC_Os12g06050 OsJ_35282 OSNPB_120156700,Os10g0206800 OSNPB_100206800,Os01g0919100 OSNPB_010919100,Os05g0409600 OSNPB_050409600 ENOG411DU78 Q9XIM8 PP155_ARATH Pentatricopeptide repeat-containing protein At2g15980 56123 Pentatricopeptide repeat-containing protein At2g15980 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2044566; AT2G15980 repeat-containing protein Os12g0407800 protein (Os12g0407900 protein) (Pentatricopeptide, putative, expressed) (cDNA clone:002-103-B10, full insert sequence) Q2QT42 Q2QT42_ORYSJ Os12g0407900 LOC_Os12g21930 Os12g0407800 OsJ_35852 OSNPB_120407900 ENOG411DU79 PCMP-E93 Q9LJ69 PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970 52558 Pentatricopeptide repeat-containing protein At3g18970 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2085874; AT3G18970 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DU7P HSFA6b Q9LUH8 HFA6B_ARATH Heat stress transcription factor A-6b (AtHsfA6b) (AtHsf-07) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 46736 Heat stress transcription factor A-6b (AtHsfA6b) (AtHsf-07) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2094339; AT3G22830 heat stress transcription factor Heat stress transcription factor A-2c (Heat stress transcription factor 25) (OsHsf-25) (Heat stress transcription factor 6) (OsHSF6) (rHsf6) Q338B0 HFA2C_ORYSJ HSFA2C HSF25 HSF6 Os10g0419300 LOC_Os10g28340 OsJ_030304 FUNCTION: Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. ENOG411DU7Q Q9LRY7,F4I5S1,A0A1P8AMW0 Q9LRY7_ARATH,F4I5S1_ARATH,A0A1P8AMW0_ARATH Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein,PB1 domain-containing protein tyrosine kinase 124861,118007,104621 Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein,PB1 domain-containing protein tyrosine kinase cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; signal transducer activity [GO:0004871]; cellular response to hypoxia [GO:0071456]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; water transport [GO:0006833],cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2093146;,locus:2197788; AT3G24715,AT1G04700 PB1 NA NA NA NA NA NA NA ENOG411DU7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR repeat-containing thioredoxin Os05g0210600 protein (Fragment) Q0DJZ3 Q0DJZ3_ORYSJ Os05g0210600 Os05g0210600 OSNPB_050210600 ENOG411DU7S MAD2 Q9LU93,A0A1I9LRJ1,F4JBB7 MAD2_ARATH,A0A1I9LRJ1_ARATH,F4JBB7_ARATH Mitotic spindle checkpoint protein MAD2 (Mitotic arrest deficient protein 2),DNA-binding HORMA family protein DISRUPTION PHENOTYPE: No visible phenotype when grown under normal growth conditions and stunted roots when grown in vitro in absence of sucrose. {ECO:0000269|PubMed:22457071}. FUNCTION: Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and delays the onset of anaphase when this process is not complete. It inhibits the activity of the anaphase promoting complex by sequestering CDC20 until all chromosomes are aligned at the metaphase plate. {ECO:0000269|PubMed:19710914}. R-ATH-141405;R-ATH-141430;R-ATH-174184; 23731,17963,23326 Mitotic spindle checkpoint protein MAD2 (Mitotic arrest deficient protein 2),DNA-binding HORMA family protein chromocenter [GO:0010369]; condensed chromosome kinetochore [GO:0000777]; cytoplasm [GO:0005737]; kinetochore [GO:0000776]; kinetochore microtubule [GO:0005828]; nuclear envelope [GO:0005635]; nucleus [GO:0005634]; spindle microtubule [GO:0005876]; cell division [GO:0051301]; mitotic spindle assembly checkpoint [GO:0007094]; regulation of mitotic cell cycle [GO:0007346],DNA binding [GO:0003677]; mitotic spindle assembly checkpoint [GO:0007094] TISSUE SPECIFICITY: Expressed in actively dividing tissues, early in organ development, in young leaves, lateral root primordia and root meristems. {ECO:0000269|PubMed:19710914}. locus:2092125; AT3G25980 Mitotic spindle checkpoint protein Os04g0486500 protein (cDNA clone:001-007-B02, full insert sequence) Q0JC85 Q0JC85_ORYSJ Os04g0486500 Os04g0486500 OSNPB_040486500 ENOG411DU7T MORC1,MORC3,MORC2,MORC6 Q84WV6,F4JPP0,Q5FV35,Q56Y74 MORC1_ARATH,MORC3_ARATH,MORC2_ARATH,MORC6_ARATH Protein MICRORCHIDIA 1 (AtMORC1) (EC 3.6.-.-) (Protein COMPROMISED RECOGNITION OF TCV 1),Protein MICRORCHIDIA 3 (AtMORC3) (EC 3.6.-.-) (Protein CRT1-homolog 2) (CRT1-h2),Protein MICRORCHIDIA 2 (AtMORC2) (EC 3.6.-.-) (Protein CRT1-homolog 1) (CRT1-h1),Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT1-h6) (Protein DEFECTIVE IN MERISTEM SILENCING 11) DISRUPTION PHENOTYPE: Loss of ATPase activity. Increased sensitivity to turnip crinkle virus (TCV) leading to spreading hypersensitive response (HR) and impaired control of viral replication and spread. Suppression of HR-like cell death induced by Pseudomonas syringae avrRpt2. Suppression of lesion formation and partial suppression of stunted growth of ssi4 mutant (PubMed:18191794). In the double mutant crt1-2 crh1-1, compromised resistance to avirulent Pseudomonas syringae and Hyaloperonospora arabidopsidis associated with compromised cytosolic calcium accumulation upon infection (PubMed:20332379). Impaired gene silencing due to decondensation of chromocenters leading to the derepression of DNA-methylated genes and transposable elements (TEs); DNA and histone methylation seems normal (PubMed:22555433, PubMed:24799676). The double mutant crt1-2 crh1-1 exhibits also an increased sensitivity to turnip crinkle virus (TCV), and reduced defense mediated by flg22 against Pseudomonas syringae (Pst). Impaired non-host resistance toward P. infestans and altered systemic acquired resistance (SAR) triggered by P. syringae pv. maculicola (Psm) AvrRpt2 cor(-). Reduced sensitivity to the DNA-damaging agent mitomycin C (PubMed:23250427). {ECO:0000269|PubMed:18191794, ECO:0000269|PubMed:20332379, ECO:0000269|PubMed:22555433, ECO:0000269|PubMed:23250427, ECO:0000269|PubMed:24799676}.,DISRUPTION PHENOTYPE: Likely lethal, leading to seeds abortion. {ECO:0000269|PubMed:18191794}.,DISRUPTION PHENOTYPE: In the double mutant crt1-2 crh1-1, compromised resistance to avirulent Pseudomonas syringae and Hyaloperonospora arabidopsidis associated with compromised cytosolic calcium accumulation upon infection (PubMed:20332379, PubMed:24799676). The double mutant crt1-2 crh1-1 exhibits also an increased sensitivity to turnip crinkle virus (TCV), and reduced defense response mediated by flg22 against Pseudomonas syringae (Pst). Impaired non-host resistance toward Phytophthora infestans and altered systemic acquired resistance (SAR) triggered by P. syringae pv. maculicola (Psm) AvrRpt2 cor(-) (PubMed:23250427). {ECO:0000269|PubMed:20332379, ECO:0000269|PubMed:23250427, ECO:0000269|PubMed:24799676}.,DISRUPTION PHENOTYPE: Accumulation of siRNAs and slight reductions of repressive epigenetic modifications (e.g. decreases in DNA methylation and H3K9me2 and increase in H3ac) at target sequences, especially in the shoot apical meristem after rosette leaves development, leading to derepression of silenced-genes (PubMed:22560611, PubMed:23675613). Stochastic silencing phenotype due to randomized RNA-directed DNA methylation (RdDM) (PubMed:23675613). Impaired gene silencing due to decondensation of chromocenters leading to the derepression of DNA-methylated genes and transposable elements (TEs); DNA and histone methylation seems normal (PubMed:22555433, PubMed:24799676, PubMed:27171427). {ECO:0000269|PubMed:22555433, ECO:0000269|PubMed:22560611, ECO:0000269|PubMed:23675613, ECO:0000269|PubMed:24799676, ECO:0000269|PubMed:27171427}. FUNCTION: Mediator of defense signaling triggered by distinct classes of R proteins. Required during hypersensitive response (HR) that confers disease resistance to turnip crinkle virus (TCV). Exhibits ATPase activity (PubMed:18191794, PubMed:19704828). Contributes to resistance against Pseudomonas syringae and Hyaloperonospora arabidopsidis, at early stages prior to cytosolic calcium ions Ca(2+) accumulation (PubMed:20332379). Required for pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), basal resistance, non-host resistance and systemic acquired resistance (SAR). Binds DNA/RNA in a non-specific manner and exhibits endonuclease activity. Probably involved in DNA repair (PubMed:23250427). Required for both RPP8- and SSI4-mediated resistance responses, thus being involved in both TIR- and CC-NB-LRR pathways (PubMed:18191794). Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing (PubMed:24799676). May also be involved in the regulation of chromatin architecture to maintain gene silencing (PubMed:22555433, PubMed:24799676). {ECO:0000269|PubMed:18191794, ECO:0000269|PubMed:19704828, ECO:0000269|PubMed:20332379, ECO:0000269|PubMed:22555433, ECO:0000269|PubMed:23250427, ECO:0000269|PubMed:24799676}.,FUNCTION: Exhibits ATPase activity. Binds DNA/RNA in a non-specific manner and exhibits endonuclease activity. Probably involved in DNA repair. Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing. May also be involved in the regulation of chromatin architecture to maintain gene silencing. {ECO:0000250|UniProtKB:Q84WV6}.,FUNCTION: Mediator of defense signaling triggered by distinct classes of R proteins. Required during hypersensitive response (HR) that confers disease resistance to turnip crinkle virus (TCV) (PubMed:19704828). Contributes to resistance against Pseudomonas syringae and Hyaloperonospora arabidopsidis, at early stages prior to cytosolic calcium ions Ca(2+) accumulation (PubMed:20332379). Required for pathogen-associated molecular pattern (PAMP)-triggered immunity, basal resistance, non-host resistance and systemic acquired resistance (SAR) (PubMed:23250427). Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing. May also be involved in the regulation of chromatin architecture to maintain gene silencing (PubMed:24799676). Exhibits ATPase activity (By similarity). {ECO:0000250|UniProtKB:Q56Y74, ECO:0000269|PubMed:19704828, ECO:0000269|PubMed:20332379, ECO:0000269|PubMed:23250427, ECO:0000269|PubMed:24799676}.,FUNCTION: Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing (PubMed:22560611, PubMed:23675613, PubMed:27171427). Together with SUVH2 and SUVH9, regulates the silencing of some transposable elements (TEs) (PubMed:27171427). Exhibits ATPase activity (PubMed:22560611). May also be involved in the regulation of chromatin architecture/condensation to maintain gene silencing (PubMed:22555433, PubMed:27171427). Binds DNA/RNA in a non-specific manner and exhibits endonuclease activity. Probably involved in DNA repair (By similarity). Positive regulator of defense against the oomycete Hyaloperonospora arabidopsidis (Hpa) (PubMed:27171361). {ECO:0000250|UniProtKB:Q84WV6, ECO:0000269|PubMed:22555433, ECO:0000269|PubMed:22560611, ECO:0000269|PubMed:23675613, ECO:0000269|PubMed:27171361, ECO:0000269|PubMed:27171427}. 3.6.-.- 70807,65939,69977,74175 Protein MICRORCHIDIA 1 (AtMORC1) (EC 3.6.-.-) (Protein COMPROMISED RECOGNITION OF TCV 1),Protein MICRORCHIDIA 3 (AtMORC3) (EC 3.6.-.-) (Protein CRT1-homolog 2) (CRT1-h2),Protein MICRORCHIDIA 2 (AtMORC2) (EC 3.6.-.-) (Protein CRT1-homolog 1) (CRT1-h1),Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT1-h6) (Protein DEFECTIVE IN MERISTEM SILENCING 11) endosome [GO:0005768]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; defense response to virus [GO:0051607]; DNA repair [GO:0006281]; gene silencing by RNA [GO:0031047]; plant-type hypersensitive response [GO:0009626]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of defense response to virus by host [GO:0002230]; positive regulation of plant-type hypersensitive response [GO:0034052]; positive regulation of systemic acquired resistance [GO:1901672]; regulation of chromatin silencing [GO:0031935]; regulation of DNA repair [GO:0006282],nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; gene silencing by RNA [GO:0031047]; regulation of chromatin silencing [GO:0031935]; regulation of DNA repair [GO:0006282],endosome [GO:0005768]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; kinase activity [GO:0016301]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; defense response to virus [GO:0051607]; DNA repair [GO:0006281]; gene silencing by RNA [GO:0031047]; plant-type hypersensitive response [GO:0009626]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of systemic acquired resistance [GO:1901672]; regulation of DNA repair [GO:0006282],chloroplast envelope [GO:0009941]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; protein homodimerization activity [GO:0042803]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; defense response [GO:0006952]; DNA repair [GO:0006281]; positive regulation of defense response to oomycetes [GO:1902290]; regulation of chromatin silencing [GO:0031935]; regulation of DNA repair [GO:0006282]; RNA-directed DNA methylation [GO:0080188] TISSUE SPECIFICITY: Expressed constitutively. {ECO:0000269|PubMed:18191794}. locus:2122264;,locus:2122244;,locus:2122254;,locus:2011226; AT4G36290,AT4G36270,AT4G36280,AT1G19100 MORC family CW-type zinc finger protein ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed (Os10g0181700 protein),Os01g0549200 protein,Os10g0181700 protein (Fragment),Os01g0549200 protein (Fragment) Q33AG5,A0A0P0V424,A0A0P0V3W5,A0A0P0XSB5,A0A0P0V437 Q33AG5_ORYSJ,A0A0P0V424_ORYSJ,A0A0P0V3W5_ORYSJ,A0A0P0XSB5_ORYSJ,A0A0P0V437_ORYSJ Os10g0181700 LOC_Os10g10190 Os10g0181700 OSNPB_100181700,Os01g0549200 OSNPB_010549200,Os10g0181700 OSNPB_100181700 ENOG411DU7U PAC1 O81148 PSA4A_ARATH Proteasome subunit alpha type-4-A (EC 3.4.25.1) (20S proteasome alpha subunit C-1) (Proteasome 27 kDa subunit) (Proteasome component 9) (Proteasome subunit alpha type-3) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 27475 Proteasome subunit alpha type-4-A (EC 3.4.25.1) (20S proteasome alpha subunit C-1) (Proteasome 27 kDa subunit) (Proteasome component 9) (Proteasome subunit alpha type-3) cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; vacuole [GO:0005773]; threonine-type endopeptidase activity [GO:0004298]; response to cadmium ion [GO:0046686]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous low levels, higher expression in siliques and flowers. {ECO:0000269|PubMed:9611183}. locus:2090399; AT3G22110 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Proteasome subunit alpha type-4-2 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3),Proteasome subunit alpha type-4-3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3),Proteasome subunit alpha type-4-1 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3) Q5VRG3,P0DKK4,P0DKK3 PSA4B_ORYSJ,PSA4C_ORYSJ,PSA4A_ORYSJ Os06g0167600 LOC_Os06g07140 OsJ_20263 OSJNBa0033B09.8 P0680A03.29,Os06g0177100 LOC_Os06g07978 P0015E04.34,PAC1A Os06g0176000 LOC_Os06g07878 OsJ_019497 P0015E04.21 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. ENOG411DU7V UGT73C1,UGT73C4,UGT73D1,UGT73C6,UGT73C5,UGT73C3,UGT73C2 Q9ZQ99,Q9ZQ97,Q9SCP6,Q9ZQ95,Q9ZQ94,Q9ZQ96,Q9ZQ98 U73C1_ARATH,U73C4_ARATH,U73D1_ARATH,U73C6_ARATH,U73C5_ARATH,U73C3_ARATH,U73C2_ARATH UDP-glycosyltransferase 73C1 (EC 2.4.1.-) (Cytokinin-O-glucosyltransferase 1) (Zeatin O-glucosyltransferase 1) (AtZOG1),UDP-glycosyltransferase 73C4 (EC 2.4.1.-),UDP-glycosyltransferase 73D1 (EC 2.4.1.-),UDP-glycosyltransferase 73C6 (EC 2.4.1.-) (Flavonol-3-O-glycoside-7-O-glucosyltransferase 1) (Zeatin O-glucosyltransferase 2),UDP-glycosyltransferase 73C5 (EC 2.4.1.-) (Cytokinin-O-glucosyltransferase 3) (Deoxynivalenol-glucosyl-transferase 1) (Zeatin O-glucosyltransferase 3) (AtZOG3),UDP-glycosyltransferase 73C3 (EC 2.4.1.-),UDP-glycosyltransferase 73C2 (EC 2.4.1.-) FUNCTION: Involved in the O-glucosylation of trans-zeatin and dihydrozeatin. Also active in vitro on cis-zeatin, dihydrozeatin-9-N-Glc, and olomoucine. Can detoxify the explosive 2,4,6-trinitrotoluene in plant by forming O- or C-glucose conjugates. {ECO:0000269|PubMed:15342621, ECO:0000269|PubMed:18702669}.,FUNCTION: Acts as a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase. 6- and 7-hydroxyflavone, but not 3- or 5-hydroxyflavone are accepted as substrates. Possesses low quercetin 3-O-glucosyltransferase, 7-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro. {ECO:0000269|PubMed:12900416, ECO:0000269|PubMed:15352060}.,FUNCTION: Specifically catalyzes 23-O-glucosylation of brassinosteroids, resulting probably in their inactivation. Also, involved in the O-glucosylation of trans-zeatin and dihydrozeatin. Active in vitro on cis-zeatin, dihydrozeatin-9-N-Glc, and olomoucine. Also involved in the detoxification of the Fusarium mycotoxin deoxynivalenol by the transfer of glucose from UDP-glucose to the hydroxyl group at C-3. Possesses low quercetin 7-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro. {ECO:0000269|PubMed:12970342, ECO:0000269|PubMed:15342621, ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:16214889}. ARA:AT2G36750-MONOMER;MetaCyc:AT2G36750-MONOMER;,ARA:AT2G36770-MONOMER;,ARA:AT3G53150-MONOMER;,MetaCyc:AT2G36800-MONOMER;,ARA:AT2G36780-MONOMER;,ARA:AT2G36760-MONOMER; 2.4.1.203; 2.4.1.- 55224,55907,57450,55929,55798,55936,55992 UDP-glycosyltransferase 73C1 (EC 2.4.1.-) (Cytokinin-O-glucosyltransferase 1) (Zeatin O-glucosyltransferase 1) (AtZOG1),UDP-glycosyltransferase 73C4 (EC 2.4.1.-),UDP-glycosyltransferase 73D1 (EC 2.4.1.-),UDP-glycosyltransferase 73C6 (EC 2.4.1.-) (Flavonol-3-O-glycoside-7-O-glucosyltransferase 1) (Zeatin O-glucosyltransferase 2),UDP-glycosyltransferase 73C5 (EC 2.4.1.-) (Cytokinin-O-glucosyltransferase 3) (Deoxynivalenol-glucosyl-transferase 1) (Zeatin O-glucosyltransferase 3) (AtZOG3),UDP-glycosyltransferase 73C3 (EC 2.4.1.-),UDP-glycosyltransferase 73C2 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; cis-zeatin O-beta-D-glucosyltransferase activity [GO:0050502]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; trans-zeatin O-beta-D-glucosyltransferase activity [GO:0050403]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152]; response to toxic substance [GO:0009636]; response to UV-B [GO:0010224],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; flavonol biosynthetic process [GO:0051555],integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; cis-zeatin O-beta-D-glucosyltransferase activity [GO:0050502]; glucosyltransferase activity [GO:0046527]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; trans-zeatin O-beta-D-glucosyltransferase activity [GO:0050403]; brassinosteroid metabolic process [GO:0016131] TISSUE SPECIFICITY: Expressed in leaves and flowers, and at a very low level in roots. {ECO:0000269|PubMed:12900416}.,TISSUE SPECIFICITY: Elongating hypocotyls and root-specific. Expressed in the vascular system, in meristematic tissues of the root tip, and in the vasculature of the hypocotyl right after germination. In late stage of flower development, expressed in petals, and in abscission zones. {ECO:0000269|PubMed:12970342, ECO:0000269|PubMed:16214889}. locus:2040590;,locus:2040610;,locus:2101938;,locus:2040540;,locus:2040570;,locus:2040530;,locus:2040600; AT2G36750,AT2G36770,AT3G53150,AT2G36790,AT2G36800,AT2G36780,AT2G36760 UDP-glycosyltransferase Glycosyltransferase (EC 2.4.1.-),Os05g0177800 protein Q9FU67,Q9FU68,Q9FU69,A0A0P0WIR4 Q9FU67_ORYSJ,Q9FU68_ORYSJ,Q9FU69_ORYSJ,A0A0P0WIR4_ORYSJ Os01g0176200 Os01g0176200 OSNPB_010176200 P0013F10.11,Os01g0176100 Os01g0176100 OsJ_00584 OSNPB_010176100 P0013F10.10,Os01g0176000 OsJ_00583 OSNPB_010176000 P0013F10.9,Os05g0177800 OSNPB_050177800 ENOG411DU7W CYP718 Q9SJH2,A0A1P8AXU2 Q9SJH2_ARATH,A0A1P8AXU2_ARATH At2g42850 (Cytochrome P450, family 718) (Putative cytochrome P450),Cytochrome P450, family 718 ARA:AT2G42850-MONOMER; R-ATH-211916;R-ATH-5365859; 55405,44425 At2g42850 (Cytochrome P450, family 718) (Putative cytochrome P450),Cytochrome P450, family 718 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2052396; AT2G42850 cytochrome P450 Os07g0520300 protein (Putative 5-alpha-taxadienol-10-beta-hydroxylase),Os07g0518100 protein (Putative taxane 14b-hydroxylase),Os07g0491800 protein (Fragment),Os07g0519800 protein Q7XIL3,Q7EZ52,A0A0P0X614,A0A0P0X6H2 Q7XIL3_ORYSJ,Q7EZ52_ORYSJ,A0A0P0X614_ORYSJ,A0A0P0X6H2_ORYSJ OJ1793_E11.119 Os07g0520300 OsJ_24476 OSNPB_070520300,Os07g0518100 OSJNBa0036M16.127 OSNPB_070518100,Os07g0491800 OSNPB_070491800,Os07g0519800 OSNPB_070519800 ENOG411DU7X Q9LRP2,Q9LNH5,A0A1P8AT28 PT317_ARATH,PT148_ARATH,A0A1P8AT28_ARATH Probable sugar phosphate/phosphate translocator At3g17430,Probable sugar phosphate/phosphate translocator At1g48230,Nodulin MtN21 /EamA-like transporter family protein 41702,40792,32379 Probable sugar phosphate/phosphate translocator At3g17430,Probable sugar phosphate/phosphate translocator At1g48230,Nodulin MtN21 /EamA-like transporter family protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021] locus:2093596;,locus:2007745; AT3G17430,AT1G48230 Sugar phosphate phosphate translocator Os03g0702700 protein (Putative DUF250 protein),Os03g0702700 protein (Fragment) Q53RH9,A0A0P0W205,A0A0P0W1Y1 Q53RH9_ORYSJ,A0A0P0W205_ORYSJ,A0A0P0W1Y1_ORYSJ Os03g0702700 Os03g0702700 OSNPB_030702700,Os03g0702700 OSNPB_030702700 ENOG411DU7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipid-transporting ATPase Phospholipid-transporting ATPase (EC 3.6.3.1) (Fragment) Q0DS44 Q0DS44_ORYSJ Os03g0334700 Os03g0334700 OSNPB_030334700 ENOG411DU7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nodulation-signaling pathway 2 protein-like NA NA NA NA NA NA NA ENOG411DU7A PNP1 Q8GZQ3 PNP1_ARATH Polyribonucleotide nucleotidyltransferase 1, chloroplastic (AtcpPNPase) (EC 2.7.7.8) (Polynucleotide phosphorylase 1) (PNPase 1) (Protein PIGMENT DEFECTIVE 326) (Protein RESISTANT TO INHIBITION WITH FSM 10) DISRUPTION PHENOTYPE: Delayed greening and retarded growth. {ECO:0000269|PubMed:16531478, ECO:0000269|PubMed:19710229, ECO:0000269|PubMed:21466602}. Adult mutant plants display a virescent phenotype: young leaves and recently expanded tissues are pale whereas mature tissues are as green as wildtype.,Mutant is unaffected by fosmidomycin treatment.,On fosmidomycin-free medium the mutant seedlings require more time than wildtype for both greening and development of true leaves.,Viable and fertile under described growth conditions. Pale green seeds and seedlings-D. Meinke-2008 FUNCTION: Involved in the metabolism of all major classes of plastid RNAs. Required for efficient 3'-end processing of mRNAs and 3'-end maturation of rRNA transcripts, but is not sufficient to mediate their degradation. Mediates tRNA degradation. May function as a poly(A) mRNA 3'-5' degrading phosphorylase. May be required for plastid ribosome assembly and non-coding RNA biogenesis and accumulation. Seems not required for efficient translation. {ECO:0000269|PubMed:12486011, ECO:0000269|PubMed:18469163, ECO:0000269|PubMed:21466602, ECO:0000269|PubMed:22384367}. 2.7.7.8 99566 Polyribonucleotide nucleotidyltransferase 1, chloroplastic (AtcpPNPase) (EC 2.7.7.8) (Polynucleotide phosphorylase 1) (PNPase 1) (Protein PIGMENT DEFECTIVE 326) (Protein RESISTANT TO INHIBITION WITH FSM 10) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 3'-5'-exoribonuclease activity [GO:0000175]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723]; carotene biosynthetic process [GO:0016120]; cellular response to phosphate starvation [GO:0016036]; chlorophyll biosynthetic process [GO:0015995]; chloroplast RNA processing [GO:0031425]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397]; negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0010323]; RNA catabolic process [GO:0006401]; rRNA processing [GO:0006364]; tRNA processing [GO:0008033]; xanthophyll biosynthetic process [GO:0016123] locus:2079429; AT3G03710 polyribonucleotide Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic (EC 2.7.7.8) (Polynucleotide phosphorylase 1) (PNPase 1) Q69LE7 PNP1_ORYSJ PNP1 Os07g0168000 LOC_Os07g07310 OSJNBa0050F10.4 FUNCTION: Involved in the metabolism of all major classes of plastid RNAs. Required for efficient 3'-end processing of mRNAs and 3'-end maturation of rRNA transcripts, but is not sufficient to mediate their degradation. Mediates tRNA degradation. May function as a poly(A) mRNA 3'-5' degrading phosphorylase (By similarity). {ECO:0000250}. ENOG411DU7B Q949W7 Q949W7_ARATH Thermosome subunit gamma (Uncharacterized protein At5g19540) 52843 Thermosome subunit gamma (Uncharacterized protein At5g19540) locus:2180821; AT5G19540 NA Os08g0387500 protein (cDNA clone:001-100-E10, full insert sequence) Q6ZA05 Q6ZA05_ORYSJ Os08g0387500 OsJ_27166 OSNPB_080387500 P0434E03.26 ENOG411DU7C Q9SUE9,Q5Q0F0,Q5Q0E8 Q9SUE9_ARATH,Q5Q0F0_ARATH,Q5Q0E8_ARATH DNA ligase (Uncharacterized protein AT4g08310),Translation initiation factor 56236,52266,52138 DNA ligase (Uncharacterized protein AT4g08310),Translation initiation factor ligase activity [GO:0016874],translation initiation factor activity [GO:0003743] locus:2132467;,locus:2194844; AT4G08310,AT1G44780 CHZ Expressed protein (Os11g0544600 protein) (cDNA clone:002-102-E08, full insert sequence),Os11g0544600 protein (Fragment) Q2R2Z3,A0A0P0Y3G9 Q2R2Z3_ORYSJ,A0A0P0Y3G9_ORYSJ Os11g0544600 LOC_Os11g34190 Os11g0544600 OsJ_34181 OSNPB_110544600,Os11g0544600 OSNPB_110544600 ENOG411DU7E FTSHI2 A8MPR5 FTSI2_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic (AtFTSHI2) (Protein EMBRYO DEFECTIVE 2083) (Protein FTSH INACTIVE PROTEASE 2) DISRUPTION PHENOTYPE: Embryo defective. {ECO:0000269|PubMed:24964212, ECO:0000303|PubMed:21286311}. Embryo defective; Transition-D. Meinke-2003 FUNCTION: Required for plastid development during embryogenesis (PubMed:24964212). Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex (PubMed:12185496). {ECO:0000269|PubMed:24964212, ECO:0000303|PubMed:12185496}. 99864 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic (AtFTSHI2) (Protein EMBRYO DEFECTIVE 2083) (Protein FTSH INACTIVE PROTEASE 2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; proteolysis [GO:0006508] locus:2094892; AT3G16290 ATP-dependent zinc metalloprotease NA NA NA NA NA NA NA ENOG411DU7F PIP P93732,F4IFH2,A0A1P8B2D9 PIP_ARATH,F4IFH2_ARATH,A0A1P8B2D9_ARATH Proline iminopeptidase (PIP) (EC 3.4.11.5) (Prolyl aminopeptidase) (PAP),Proline iminopeptidase (PIP) (EC 3.4.11.5) (Prolyl aminopeptidase),Proline iminopeptidase (EC 3.4.11.5) FUNCTION: Specifically catalyzes the removal of N-terminal proline residues from peptides. {ECO:0000250}. 3.4.11.5 43059,37433,42953 Proline iminopeptidase (PIP) (EC 3.4.11.5) (Prolyl aminopeptidase) (PAP),Proline iminopeptidase (PIP) (EC 3.4.11.5) (Prolyl aminopeptidase),Proline iminopeptidase (EC 3.4.11.5) chloroplast [GO:0009507]; cytosol [GO:0005829]; aminopeptidase activity [GO:0004177],cytoplasm [GO:0005737]; aminopeptidase activity [GO:0004177] locus:2058083; AT2G14260 proline iminopeptidase Os05g0513900 protein (Fragment) Q0DGS8,A0A0P0WPE9 Q0DGS8_ORYSJ,A0A0P0WPE9_ORYSJ Os05g0513900 Os05g0513900 OSNPB_050513900,Os05g0513900 OSNPB_050513900 ENOG411DU7G CRRSP15,PDLP8 Q6NKQ9,A0A1I9LQV5,A0A1I9LQV4 CRR15_ARATH,A0A1I9LQV5_ARATH,A0A1I9LQV4_ARATH Cysteine-rich repeat secretory protein 15 (Plasmodesmata-located protein 8) (PDLP8),Plasmodesmata-located protein 8 FUNCTION: Modulates cell-to-cell trafficking. {ECO:0000250}. 30528,27214,31668 Cysteine-rich repeat secretory protein 15 (Plasmodesmata-located protein 8) (PDLP8),Plasmodesmata-located protein 8 integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transport [GO:0006810]; viral process [GO:0016032],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Highly expressed in pollen, lateral root and elongation zone. {ECO:0000269|PubMed:19704520}. locus:2101811; AT3G60720 cysteine-rich repeat secretory protein Os04g0537800 protein (cDNA clone:J033135E09, full insert sequence),Os02g0643900 protein Q0JBE6,A0A0P0VMI2 Q0JBE6_ORYSJ,A0A0P0VMI2_ORYSJ Os04g0537800 Os04g0537800 OSNPB_040537800,Os02g0643900 OSNPB_020643900 ENOG411DU7H Q9FVR4,A8MRN1 Q9FVR4_ARATH,A8MRN1_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g32190) (Uncharacterized protein F3C3.3),Alpha/beta-Hydrolases superfamily protein 46393,37498 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g32190) (Uncharacterized protein F3C3.3),Alpha/beta-Hydrolases superfamily protein plasma membrane [GO:0005886]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2031725; AT1G32190 abhydrolase domain-containing protein Os08g0161500 protein (Putative TPA: Cgi67 serine protease) (cDNA clone:001-027-A01, full insert sequence) Q84SE0 Q84SE0_ORYSJ P0577B11.117 Os08g0161500 OSNPB_080161500 ENOG411DU7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411DU7J NOP56 Q9LTV0,Q9SGT7 Q9LTV0_ARATH,Q9SGT7_ARATH NOP56-like pre RNA processing ribonucleoprotein (Nucleolar protein),At1g56110/T6H22_9 (NOP56-like pre RNA processing ribonucleoprotein) (NOP56-like protein) (Nucleolar protein) (SAR DNA binding protein, putative) R-ATH-6791226; 56180,58673 NOP56-like pre RNA processing ribonucleoprotein (Nucleolar protein),At1g56110/T6H22_9 (NOP56-like pre RNA processing ribonucleoprotein) (NOP56-like protein) (Nucleolar protein) (SAR DNA binding protein, putative) box C/D snoRNP complex [GO:0031428]; small-subunit processome [GO:0032040]; viral nucleocapsid [GO:0019013]; snoRNA binding [GO:0030515]; rRNA modification [GO:0000154],box C/D snoRNP complex [GO:0031428]; cell wall [GO:0005618]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; small-subunit processome [GO:0032040]; viral nucleocapsid [GO:0019013]; snoRNA binding [GO:0030515]; rRNA modification [GO:0000154] locus:2087755;,locus:2205270; AT3G12860,AT1G56110 Nucleolar protein Os07g0661800 protein (Putative nucleolar protein),Nucleolar protein Nop56, putative, expressed (Os03g0352300 protein) Q8H2U5,Q10LF8 Q8H2U5_ORYSJ,Q10LF8_ORYSJ P0453E03.111 Os07g0661800 OSNPB_070661800,LOC_Os03g22880 Os03g0352300 OsJ_10851 OSNPB_030352300 ENOG411DU7K AKHSDH2,AKHSDH1 O81852,Q9SA18 AKH2_ARATH,AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic (AK-HD 2) (AK-HSDH 2) (Beta-aspartyl phosphate homoserine 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)],Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic (AK-HD 1) (AK-HSDH 1) (Beta-aspartyl phosphate homoserine 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 3/3.; PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5.; PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 3/5. 2.7.2.4; 1.1.1.3 100250,99404 Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic (AK-HD 2) (AK-HSDH 2) (Beta-aspartyl phosphate homoserine 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)],Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic (AK-HD 1) (AK-HSDH 1) (Beta-aspartyl phosphate homoserine 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; aspartate kinase activity [GO:0004072]; ATP binding [GO:0005524]; homoserine dehydrogenase activity [GO:0004412]; NADP binding [GO:0050661]; homoserine biosynthetic process [GO:0009090]; lysine biosynthetic process via diaminopimelate [GO:0009089]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088] locus:2133995;,locus:2029564; AT4G19710,AT1G31230 bifunctional aspartokinase homoserine dehydrogenase Os08g0342400 protein (Putative aspartate kinase, homoserine dehydrogenase),Os08g0342400 protein (Fragment),Aspartate kinase-homoserine dehydrogenase (Os09g0294000 protein) (cDNA clone:J013146N15, full insert sequence),Os09g0294000 protein (Fragment) Q6ZD10,Q0J6A9,Q69LG7,Q6ZD09,A0A0P0XL45 Q6ZD10_ORYSJ,Q0J6A9_ORYSJ,Q69LG7_ORYSJ,Q6ZD09_ORYSJ,A0A0P0XL45_ORYSJ OJ1790_D02.29-1 Os08g0342400 OSNPB_080342400,Os08g0342400 Os08g0342400 OSNPB_080342400,Os09g0294000 OSJNBa0044K01.3 OSNPB_090294000,OJ1790_D02.29-2 Os08g0342400 OSNPB_080342400,Os09g0294000 OSNPB_090294000 ENOG411DU7M CSP41B,CRB Q9SA52,A0A1P8ATL2 CP41B_ARATH,A0A1P8ATL2_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic (CSP41-b) (Heteroglycan-interacting protein 1.3) (Protein CHLOROPLAST RNA BINDING) (Protein Gb5f),Chloroplast RNA binding protein DISRUPTION PHENOTYPE: Small and pale plants, with altered chloroplast morphology (anarchic membrane organization) and reduced photosynthetic performance associated with a reduction in CSP41A levels. Altered monosaccharide pattern of heteroglycans. Lethal when associated with CSP41A disruption. Reduced transcript levels of photosynthesis genes. Defects in embryo development. The csp41b-2 prin2-2 double mutant is embryo lethal (PubMed:25161659). {ECO:0000269|PubMed:17617174, ECO:0000269|PubMed:18398686, ECO:0000269|PubMed:19067181, ECO:0000269|PubMed:21087810, ECO:0000269|PubMed:25161659}. Smaller and paler than wild-type plants. Reduction in both chlorophyll a and chlorophyll b. Impaired photosynthesis.,Pale green seedlings short shoots short siliques and reduced seed set. Mutants do not accumulate CSP41b protein and CSP41a protein levels are reduced. FUNCTION: Binds and cleaves RNA, particularly in stem-loops. Associates with pre-ribosomal particles in chloroplasts, and participates in chloroplast ribosomal RNA metabolism, probably during the final steps of 23S rRNA maturation. May enhance transcription by the plastid-encoded polymerase and translation in plastid via the stabilization of ribosome assembly intermediates. Required for chloroplast integrity. Involved in the regulation of the circadian system. Involved in the regulation of heteroglycans and monosaccharide mobilization. Required for full expression of genes transcribed by the plastid-encoded RNA polymerase (PEP). Essential for embryo development (PubMed:25161659). {ECO:0000269|PubMed:16633814, ECO:0000269|PubMed:17617174, ECO:0000269|PubMed:18398686, ECO:0000269|PubMed:19067181, ECO:0000269|PubMed:21087810, ECO:0000269|PubMed:25161659}. 42620,43266 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic (CSP41-b) (Heteroglycan-interacting protein 1.3) (Protein CHLOROPLAST RNA BINDING) (Protein Gb5f),Chloroplast RNA binding protein apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; plastid-encoded plastid RNA polymerase complex [GO:0000427]; plastoglobule [GO:0010287]; ribosome [GO:0005840]; stromule [GO:0010319]; vacuole [GO:0005773]; catalytic activity [GO:0003824]; coenzyme binding [GO:0050662]; DNA binding [GO:0003677]; heteropolysaccharide binding [GO:0010297]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; cellular response to water deprivation [GO:0042631]; chloroplast organization [GO:0009658]; circadian rhythm [GO:0007623]; defense response to bacterium [GO:0042742]; monosaccharide metabolic process [GO:0005996]; plastid translation [GO:0032544]; polysaccharide catabolic process [GO:0000272]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of translation [GO:0045727]; regulation of gene expression [GO:0010468]; response to cold [GO:0009409]; response to wounding [GO:0009611]; rRNA processing [GO:0006364],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] DEVELOPMENTAL STAGE: In young seedlings, expressed in hypocotyls and cotyledons. In older seedlings, limited to the outer epidermal cell layer of leaves and petioles (including guard cells). Present in trichomes and hydathodes. In flowers, detected in sepals and siliques. {ECO:0000269|PubMed:16633814}. TISSUE SPECIFICITY: Highly expressed in seedlings, particularly in photosynthetically active organs. Mostly expressed in young and mature leaves, and, to a lower extent, in flowers. Low expression in etiolated seedlings compared to green seedlings. {ECO:0000269|PubMed:16633814, ECO:0000269|PubMed:21087810}. locus:2203028; AT1G09340 NAD dependent epimerase/dehydratase family Os12g0420200 protein (RNA binding protein, putative, expressed),Os12g0420200 protein (Fragment) Q2QSR7,A0A0P0Y9F9 Q2QSR7_ORYSJ,A0A0P0Y9F9_ORYSJ Os12g0420200 LOC_Os12g23180 Os12g0420200 OsJ_35887 OSNPB_120420200,Os12g0420200 OSNPB_120420200 ENOG411DX3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) AT-hook motif nuclear-localized protein Q84K39 Q84K39_ORYSJ OJ1261C08.1 OSJNBa0071M09.20 LOC_Os03g16350 Os03g0270000 OSNPB_030270000 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000256|PIRNR:PIRNR016021}. ENOG411DX3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os05g0354400 protein (Fragment),Os05g0354400 protein A0A0P0WL99,A0A0P0WL81 A0A0P0WL99_ORYSJ,A0A0P0WL81_ORYSJ Os05g0354400 OSNPB_050354400 ENOG411DX3Z ARF19,ARF7,NPH4 Q8RYC8,P93022,F4K5M5 ARFS_ARATH,ARFG_ARATH,F4K5M5_ARATH Auxin response factor 19 (Auxin-responsive protein IAA22),Auxin response factor 7 (Auxin-responsive protein IAA21/IAA23/IAA25) (Protein BIPOSTO) (Protein NON-PHOTOTROPIC HYPOCOTYL 4) (Protein TRANSPORT INHIBITOR RESPONSE 5),Auxin response factor The primary roots of the mutant produce as many lateral roots as the wild type.,When seedlings are grown vertically under dark conditions the mutant has a normal gravitropic response.,no obvious auxin-related growth phenotype but roots show mild auxin resistance,The double mutant exhibits much stronger auxin-related phenotypes than those of the single mutants. Adult double mutant plants have thin and short inflorescence stems and their rosette leaves are small and epinastic. In addition it has reduced numbers of inflorescence stems suggesting enhanced apical dominance. By contrast its flowers appear to be normal and they fertilize normally.,The double mutant mutant displays agravitropic responses in both hypocotyls and roots. When seedlings are grown vertically under dark conditions the regulation of growth orientation is disrupted in both hypocotyls and roots with the hypocotyls occasionally growing downward and the roots upward. Also the roots and hypocotyls of the double mutant show reduced gravitropic curvatures compared with the wild type when vertically dark-grown seedlings are reoriented by 90°.,The phenotype of the double mutant is most obvious at its seedling stage with its most prominent phenotype being severely impaired lateral root formation. Its primary roots fail to produce lateral roots in 2-week-old seedlings. However double mutant seedlings start to generate several lateral roots after ~2 weeks of growth and their morphological appearance is normal.,The phototropic response toward blue light in hypocotyls of double mutant seedlings is disrupted.,nph4-1 arf19 double mutant; agravitropic response in both hypocotyls and roots; impaired phototropic response in hypocotyls; impaired lateral root formation; small plant size; small and epinastic rosette leaves; reduced auxin sensitivity,Long hypocotyl and elongated primary roots when germinated and grown on MS with sirtinol in darkness. Auxin resistant in both light and dark. Roots are less sensitive to the ethylene precursor ACC than wt roots.,Dark grown seedlings on sirtinol have both long primary roots and long hypocotyls. More resistant to 24-D and IAA than single mutants in both light and dark. The ethylene resistant root phenotype of arf19-101 is enhanced by arf7-201.,Seedlings grown in the dark on sirtinol show long hypocotyls but no apical hook have primary roots and are resistant to IAA and 24-D. In the dark hypocotyls but not roots are resistant to 24-D. There is no obvious difference between wt and mutants grown on 24-D in the light.,Gravitropic curvature similar to that of wildtype (Col) when dark-grown. Over time however the curvature becomes intermediate between that of the nph4 single mutant and wildtype.,In the presence of 1 microM brassinazole an inhibitor of brassinolide biosynthesis the mutant hypocotyls display the same gravitropic time course as that of wildtype.,Leaves and cotyledons are only weakly epinastic.,Mutant hypocotyls are more sensitive to IAA treatment (inhibition of growth) than those of wildtype.,Similar phototropic response of etiolated hypocotyls compared to that of wildtype.,Hypocotyl growth resistant (but not root growth) to 24-D inhibition compared to wildtype.,Mature mutant plants are largely wildtype in phenotype apart for the morphology of the rosette leaves.,Root growth significantly reduced (about two-third of that of wildtype) when grown in white light.,Rosette leaves are somewhat epinatic albeit less so than those of msg1-2.,Slower gravitropic response than wildtype although the final curvatures are comparable.,Dramatically reduced phototropic response.,Phenotype not described.,Strongly epinastic rosette leaves.,About half of the rosette leaves are epinastic the remaining half was hyponastic.,Gravitropic response of dark-grown mutant hypocotyls is slower than that of wildtype (Col).,Mutant hypocotyls are more resistant to IAA treatment (inhibition of growth) than wildtype.,Slower phototropic response of etiolated hypocotyl compared to wildtype.,When grown on 24-D-containing medium the hyponastic rosette leaves become flat.,Mutant produces fewer lateral roots compared with the wild type.,When seedlings are grown vertically under dark conditions the hypocotyl growth orientation of mutant is significantly skewed compared with the wild type. Insensitive to ethylene and IAA; Resistant to 2,4-D and sirtinol (activator of auxin signaling); Heterozygotes: Intermediate 2,4-D resistance phenotype-Y. Zhao-2006,Altered inflorescence gravitropism; Reduced phototropism-E. Liscum-2000 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Act as a transcriptional activator of several tropic stimulus-induced (TSI) genes, including SAUR50. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF5. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:16371470, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 120576,128886,127440 Auxin response factor 19 (Auxin-responsive protein IAA22),Auxin response factor 7 (Auxin-responsive protein IAA21/IAA23/IAA25) (Protein BIPOSTO) (Protein NON-PHOTOTROPIC HYPOCOTYL 4) (Protein TRANSPORT INHIBITOR RESPONSE 5),Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; lateral root development [GO:0048527]; lateral root formation [GO:0010311]; leaf development [GO:0048366]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; blue light signaling pathway [GO:0009785]; gravitropism [GO:0009630]; lateral root development [GO:0048527]; lateral root formation [GO:0010311]; leaf development [GO:0048366]; phototropism [GO:0009638]; positive regulation of transcription, DNA-templated [GO:0045893]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. locus:2202205;,locus:2180469; AT1G19220,AT5G20730 auxin response factor Auxin response factor 19 (OsARF7a),Auxin response factor 5,Auxin response factor 16,Auxin response factor 21 (OsARF7b),Os06g0196700 protein,Auxin response factor (Fragment),Os08g0520500 protein (Fragment) Q0D9R7,Q6Z2W3,A3B9A0,Q6YZW0,C7J3Z7,A0A0P0XIX0,A0A0P0VEL8,A0A0P0XIJ3 ARFS_ORYSJ,ARFE_ORYSJ,ARFP_ORYSJ,ARFU_ORYSJ,C7J3Z7_ORYSJ,A0A0P0XIX0_ORYSJ,A0A0P0VEL8_ORYSJ,A0A0P0XIJ3_ORYSJ ARF19 ARF7A Os06g0702600 LOC_Os06g48950 OJ1215_E11.1 P0596H10.43,ARF5 Os02g0141100 LOC_Os02g04810 OJ1679_B08.29 OsJ_005181,ARF16 Os06g0196700 LOC_Os06g09660 OsJ_019622,ARF21 ARF7B Os08g0520500 LOC_Os08g40900 OJ1003_A09.14 P0689E12.38,Os06g0196700 Os06g0196700 OSNPB_060196700,Os08g0520550 OSNPB_080520550,Os02g0141100 OSNPB_020141100,Os08g0520500 OSNPB_080520500 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. ENOG411ED2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0486900 protein (Fragment),Os09g0106000 protein A0A0N7KU18,A0A0P0XJT3 A0A0N7KU18_ORYSJ,A0A0P0XJT3_ORYSJ Os12g0486900 OSNPB_120486900,Os09g0106000 OSNPB_090106000 ENOG411ECIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family NA NA NA NA NA NA NA ENOG411EDFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411EDFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family NA NA NA NA NA NA NA ENOG411EDFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EDFQ CYP81F3 Q0WTF4 C81F3_ARATH Cytochrome P450 81F3 (EC 1.14.-.-) FUNCTION: Involved in indole glucosinolate biosynthesis. Catalyzes hydroxylation reactions of the glucosinolate indole ring. Converts indol-3-yl-methylglucosinolate (I3M) to 4-hydroxy-indol-3-yl-methylglucosinolate (4OH-I3M) and/or 1-hydroxy-indol-3-yl-methylglucosinolate (1OH-I3M) intermediates. These hydroxy intermediates are converted to 4-methoxy-indol-3-yl-methylglucosinolate (4MO-I3M) and 1-methoxy-indol-3-yl-methylglucosinolate (1MO-I3M) by indole glucosinolate methyltransferase 1 and 2 (IGMT1 and IGMT2). {ECO:0000269|PubMed:21317374}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:AT4G37400-MONOMER; 1.14.-.- 56637 Cytochrome P450 81F3 (EC 1.14.-.-) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550] locus:2126372; AT4G37400 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411EDFP Q9T028 Q9T028_ARATH Nucleolar-like protein (Uncharacterized protein AT4g39190) (Uncharacterized protein T22F8.90) 31817 Nucleolar-like protein (Uncharacterized protein AT4g39190) (Uncharacterized protein T22F8.90) integral component of membrane [GO:0016021] locus:2136318; AT4G39190 NA NA NA NA NA NA NA NA ENOG411EDFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0885500 protein Q5N8H2 Q5N8H2_ORYSJ Os01g0885500 OsJ_04328 OSNPB_010885500 P0408G07.18 ENOG411EDFR Q1PE27,Q9T035,Q9M2B5,Q9SUR8,O49488 FBK92_ARATH,FBK97_ARATH,FBK72_ARATH,FBK88_ARATH,FBK93_ARATH F-box/kelch-repeat protein At4g33900,Putative F-box/kelch-repeat protein At4g39290,Putative F-box/kelch-repeat protein At3g43710,F-box/kelch-repeat protein At4g23580,Putative F-box/kelch-repeat protein At4g34170 43186,42173,43408,43599,33448 F-box/kelch-repeat protein At4g33900,Putative F-box/kelch-repeat protein At4g39290,Putative F-box/kelch-repeat protein At3g43710,F-box/kelch-repeat protein At4g23580,Putative F-box/kelch-repeat protein At4g34170 locus:2118954;,locus:2136333;,locus:2080198;,locus:2128419;,locus:2124221; AT4G33900,AT4G39290,AT3G43710,AT4G23580,AT4G34170 Kelch motif NA NA NA NA NA NA NA ENOG411EDFU UBP13,UBP12 Q84WU2,Q9FPT1,F4J7I2,F4K3X1 UBP13_ARATH,UBP12_ARATH,F4J7I2_ARATH,F4K3X1_ARATH Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.4.19.12) (Deubiquitinating enzyme 13) (AtUBP13) (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13),Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.4.19.12) (Deubiquitinating enzyme 12) (AtUBP12) (Ubiquitin thioesterase 12) (Ubiquitin-specific-processing protease 12),Ubiquitin-specific protease 13,Ubiquitin-specific protease 12 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT3G11910-MONOMER;,ARA:AT5G06600-MONOMER; R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-8866652; 3.4.19.12 130649,130607,130521,115152 Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.4.19.12) (Deubiquitinating enzyme 13) (AtUBP13) (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13),Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.4.19.12) (Deubiquitinating enzyme 12) (AtUBP12) (Ubiquitin thioesterase 12) (Ubiquitin-specific-processing protease 12),Ubiquitin-specific protease 13,Ubiquitin-specific protease 12 cytosol [GO:0005829]; plasmodesma [GO:0009506]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],cytosol [GO:0005829]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2081501;,locus:2144118; AT3G11910,AT5G06600 ubiquitin carboxyl-terminal hydrolase Os11g0573000 protein (Fragment) A0A0P0Y3W8 A0A0P0Y3W8_ORYSJ Os11g0573000 OSNPB_110573000 ENOG411EDFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EDFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411EDFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 12-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (By similarity) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 3) (ARD 3) (Fe-ARD 3),1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring)) (ARD) (Fe-ARD) Q7XNS7,A0A0P0W8W1 MTND3_ORYSJ,A0A0P0W8W1_ORYSJ ARD3 Os04g0345800 LOC_Os04g27830 OSJNBb0085H11.10,Os04g0345800 OSNPB_040345800 FUNCTION: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). {ECO:0000255|HAMAP-Rule:MF_03154}.,FUNCTION: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). {ECO:0000256|HAMAP-Rule:MF_03154, ECO:0000256|SAAS:SAAS00003715}. ENOG411EDFI HPAT2 Q494Q2 HPAT2_ARATH Hydroxyproline O-arabinosyltransferase 2 (EC 2.4.2.58) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:24036508). Short-root-hair phenotype (PubMed:25944827). Hpat1 hpat2 double mutants have longer hypocotyls, are early flowering and show early senescence in leaves associated with a decrease in chlorophyll content (PubMed:24036508). Hpat1 hpat2 hpat3 tiple mutants fail to produce detectable levels of Hyp-arabinosides, have low fertility and shorter pollen tubes (PubMed:26577059). {ECO:0000269|PubMed:24036508, ECO:0000269|PubMed:25944827, ECO:0000269|PubMed:26577059}. FUNCTION: Glycosyltransferase involved in the O-arabinosylation of several proteins including extensins and small signaling peptides (PubMed:24036508, PubMed:26577059). Catalyzes the transfer of the initial L-arabinose to the hydroxyl group of Hyp residues (PubMed:24036508). Contributes redundantly with HPAT1 and HPAT3 to arabinosylation of EXT3 (PubMed:24036508). {ECO:0000269|PubMed:24036508, ECO:0000269|PubMed:26577059}. ARA:AT2G25260-MONOMER; 2.4.2.58 40972 Hydroxyproline O-arabinosyltransferase 2 (EC 2.4.2.58) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; hydroxyproline O-arabinosyltransferase activity [GO:1990585]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:24036508}. locus:2059573; AT2G25260 NA NA NA NA NA NA NA NA ENOG411EDFH Q8GWU3,A0A1I9LNS8,A0A1I9LNS7 Q8GWU3_ARATH,A0A1I9LNS8_ARATH,A0A1I9LNS7_ARATH At3g20200 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein) (Uncharacterized protein At3g20200/MAL21_24),Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 86191,84105,81332 At3g20200 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein) (Uncharacterized protein At3g20200/MAL21_24),Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777]; response to stress [GO:0006950],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950] locus:2087610; AT3G20200 Universal stress protein family NA NA NA NA NA NA NA ENOG411EDFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDFM BSK11 A0A1P8ANY4,F4I7Y4 A0A1P8ANY4_ARATH,F4I7Y4_ARATH Kinase with tetratricopeptide repeat domain-containing protein FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. {ECO:0000250|UniProtKB:Q944A7}. 57129,57611 Kinase with tetratricopeptide repeat domain-containing protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2036426; AT1G50990 STYKc NA NA NA NA NA NA NA ENOG411EDFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_TTF NA NA NA NA NA NA NA ENOG411EDFC Q9SI67 Q9SI67_ARATH Ankyrin repeat/KH domain protein (DUF1442) (At1g62840) (F23N19.19) (Uncharacterized protein At1g62840) 24583 Ankyrin repeat/KH domain protein (DUF1442) (At1g62840) (F23N19.19) (Uncharacterized protein At1g62840) locus:2026202; AT1G62840 Protein of unknown function (DUF1442) NA NA NA NA NA NA NA ENOG411EDFE ATXYN3 F4JG11,F4JG10 F4JG11_ARATH,F4JG10_ARATH Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein 74401,84552 Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],endo-1,4-beta-xylanase activity [GO:0031176]; carbohydrate metabolic process [GO:0005975] locus:2128833; AT4G08160 glycosyl hydrolase family 10 protein NA NA NA NA NA NA NA ENOG411EDFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EDFG ZHD1 Q9FKP8 ZHD1_ARATH Zinc-finger homeodomain protein 1 (AtZHD1) (Homeobox protein 25) (AtHB-25) (Zinc finger homeodomain transcription factor 2) FUNCTION: Putative transcription factor. 31098 Zinc-finger homeodomain protein 1 (AtZHD1) (Homeobox protein 25) (AtHB-25) (Zinc finger homeodomain transcription factor 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; regulation of gibberellin biosynthetic process [GO:0010371]; regulation of transcription, DNA-templated [GO:0006355]; seed maturation [GO:0010431]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. locus:2168240; AT5G65410 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411EDFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDF9 Q4PSD8 Q4PSD8_ARATH Copper-binding family protein (Heavy metal transport/detoxification superfamily protein) 30559 Copper-binding family protein (Heavy metal transport/detoxification superfamily protein) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2153794; AT5G37860 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EDF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EDF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-hydroxyacyl-CoA dehydrogenase NAD binding domain NA NA NA NA NA NA NA ENOG411EDF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os10g0133800 protein,Os10g0133600 protein (Fragment),Os10g0131500 protein B9G7E3,Q0IZ39,A0A0P0XSF7 B9G7E3_ORYSJ,Q0IZ39_ORYSJ,A0A0P0XSF7_ORYSJ Os10g0133800 OsJ_30633 OSNPB_100133800,Os10g0133600 OSNPB_100133600,Os10g0131500 OSNPB_100131500 ENOG411EDF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mechanosensitive ion channel NA NA NA NA NA NA NA ENOG411EDF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 Os01g0300400 protein,Os08g0300100 protein,Os12g0625200 protein (Fragment) A0A0N7KCT5,A0A0P0XE43,A0A0P0YC83 A0A0N7KCT5_ORYSJ,A0A0P0XE43_ORYSJ,A0A0P0YC83_ORYSJ Os01g0300400 OSNPB_010300400,Os08g0300100 OSNPB_080300100,Os12g0625200 OSNPB_120625200 ENOG411EDF5 AKR4C8 O80944,A0A1P8B1V1 AKRC8_ARATH,A0A1P8B1V1_ARATH Aldo-keto reductase family 4 member C8 (EC 1.1.1.-),NAD(P)-linked oxidoreductase superfamily protein FUNCTION: Oxidoreductase acting on a broad range of substrates: reduces ketosteroids, aromatic aldehydes, ketones, sugars and other aliphatic aldehydes, and oxidizes hydroxysteroids. May function as detoxifiying enzyme by reducing a range of toxic aldehydes and ketones produced during stress. {ECO:0000269|PubMed:19616008}. ARA:AT2G37760-MONOMER;ARA:GQT-1608-MONOMER;MetaCyc:AT2G37760-MONOMER; R-ATH-156590;R-ATH-193144;R-ATH-193368;R-ATH-193775;R-ATH-193807;R-ATH-196108;R-ATH-2162123;R-ATH-5365859;R-ATH-5652227;R-ATH-5661270; 1.1.1.- 34685,29831 Aldo-keto reductase family 4 member C8 (EC 1.1.1.-),NAD(P)-linked oxidoreductase superfamily protein cytosol [GO:0005829]; aldo-keto reductase (NADP) activity [GO:0004033]; NADP+ binding [GO:0070401]; steroid dehydrogenase activity [GO:0016229]; oxidation-reduction process [GO:0055114]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to toxic substance [GO:0009636]; response to water deprivation [GO:0009414],oxidoreductase activity [GO:0016491] locus:2040751; AT2G37760 reductase family NA NA NA NA NA NA NA ENOG411EDF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SMP-30/Gluconolaconase/LRE-like region NA NA NA NA NA NA NA ENOG411EDF7 A0A1I9LSJ2,Q58FW3 A0A1I9LSJ2_ARATH,Q58FW3_ARATH Tropomyosin 32279,36593 Tropomyosin locus:2103187; AT3G10880 NA NA NA NA NA NA NA NA ENOG411EDF6 TSA1 F4ICX9 TSA1_ARATH TSK-associating protein 1 FUNCTION: Involved in seedling development in the dark. May be involved, when interacting with TSK, in the organization of spindle microtubules and may participate, when interacting with GIP1, in structural links between the nuclear envelope and the cytoskeleton. {ECO:0000269|PubMed:22133685, ECO:0000269|PubMed:24348487}. 84376 TSK-associating protein 1 chloroplast thylakoid membrane [GO:0009535]; endoplasmic reticulum lumen [GO:0005788]; nuclear envelope [GO:0005635]; peroxisome [GO:0005777]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; defense response to fungus [GO:0050832]; photomorphogenesis [GO:0009640] TISSUE SPECIFICITY: Expressed preferentially in flowers and shoot apex. {ECO:0000269|PubMed:15964904}. locus:2018164; AT1G52410 tsk-associating protein 1 NA NA NA NA NA NA NA ENOG411DPQN SFH8,SFH5,SFH6,SFH4 F4IHJ0,Q8GXC6,F4JVA6,F4HP88,B3H588,A0A1P8AQG3,F4JVA7,F4HP89,F4HZ25 SFH8_ARATH,SFH5_ARATH,SFH6_ARATH,SFH4_ARATH,B3H588_ARATH,A0A1P8AQG3_ARATH,F4JVA7_ARATH,F4HP89_ARATH,F4HZ25_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 (Protein SEC FOURTEEN HOMOLOGS 8) (AtSFH8),Phosphatidylinositol/phosphatidylcholine transfer protein SFH5 (Protein SEC FOURTEEN HOMOLOGS 5) (AtSFH5),Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 (Protein SEC FOURTEEN HOMOLOGS 6) (AtSFH6),Phosphatidylinositol/phosphatidylcholine transfer protein SFH4 (Protein SEC FOURTEEN HOMOLOGS 4) (AtSFH4),Sec14p-like phosphatidylinositol transfer family protein FUNCTION: Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}. 71725,69956,69603,69280,72116,50781,69376,61128,77082 Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 (Protein SEC FOURTEEN HOMOLOGS 8) (AtSFH8),Phosphatidylinositol/phosphatidylcholine transfer protein SFH5 (Protein SEC FOURTEEN HOMOLOGS 5) (AtSFH5),Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 (Protein SEC FOURTEEN HOMOLOGS 6) (AtSFH6),Phosphatidylinositol/phosphatidylcholine transfer protein SFH4 (Protein SEC FOURTEEN HOMOLOGS 4) (AtSFH4),Sec14p-like phosphatidylinositol transfer family protein Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; protein transport [GO:0015031],intracellular [GO:0005622]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; transporter activity [GO:0005215],plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2136288;,locus:2013134;,locus:2050019;,locus:2018416; AT2G21520,AT1G75370,AT4G39170,AT1G19650 transfer protein Os02g0133100 protein (Fragment) Q0E473 Q0E473_ORYSJ Os02g0133100 Os02g0133100 OSNPB_020133100 ENOG411E79U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0519200 protein,Expressed protein (Os11g0513700 protein) (cDNA clone:J023059G14, full insert sequence),Os11g0513000 protein Q2R3I7,Q2R3M3,A0A0P0Y2T4 Q2R3I7_ORYSJ,Q2R3M3_ORYSJ,A0A0P0Y2T4_ORYSJ Os11g0519200 LOC_Os11g31800 OsJ_34053 OSNPB_110519200,LOC_Os11g31450 Os11g0513700 OsJ_34019 OSNPB_110513700,Os11g0513000 OSNPB_110513000 ENOG411E79S Q9M0C1 Q9M0C1_ARATH At4g30390 (UDP-arabinopyranose mutase) (Uncharacterized protein AT4g30390) 10638 At4g30390 (UDP-arabinopyranose mutase) (Uncharacterized protein AT4g30390) locus:2118661; AT4G30390 NA NA NA NA NA NA NA NA ENOG411E79P A0A1P8AM80,Q6AWV5 A0A1P8AM80_ARATH,Q6AWV5_ARATH Uncharacterized protein,At4g00525 15867,15876 Uncharacterized protein,At4g00525 locus:504955466; AT4G00525 NA NA NA NA NA NA NA NA ENOG411E79Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os03g0660400 protein,Auxin responsive protein (Os03g0660500 protein) (Putative auxin responsive protein) A3AL27,Q75GQ1 A3AL27_ORYSJ,Q75GQ1_ORYSJ Os03g0660400 OsJ_11983 OSNPB_030660400,OSJNBb0065L20.12 Os03g0660500 LOC_Os03g45860 OSNPB_030660500 ENOG411E79Y Q9SX67,Q9LUN9 Q9SX67_ARATH,Q9LUN9_ARATH At1g48330 (F11A17.11) (SsrA-binding protein),SsrA-binding protein 8516,9068 At1g48330 (F11A17.11) (SsrA-binding protein),SsrA-binding protein locus:2007705;,locus:2090497; AT1G48330,AT3G17580 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E79G Q9FGD2 Y5698_ARATH Putative B3 domain-containing protein At5g66980 38780 Putative B3 domain-containing protein At5g66980 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2158108; AT5G66980 Transcriptional factor B3 family protein NA NA NA NA NA NA NA ENOG411E79B MAB16.4 Q9LVY8,Q84WS6,F4K2W9,F4I9U3,F4I9U2 Q9LVY8_ARATH,Q84WS6_ARATH,F4K2W9_ARATH,F4I9U3_ARATH,F4I9U2_ARATH Gb|AAD26867.1 (Transmembrane protein),Nucleolin (Uncharacterized protein At1g65090) (Uncharacterized protein At1g65100),Transmembrane protein,Nucleolin 26615,26749,33209,41866,31788 Gb|AAD26867.1 (Transmembrane protein),Nucleolin (Uncharacterized protein At1g65090) (Uncharacterized protein At1g65100),Transmembrane protein,Nucleolin integral component of membrane [GO:0016021] locus:2158951;,locus:2014978; AT5G36100,AT1G65090 NA Expressed protein (Os12g0506700 protein) Q2QQ53 Q2QQ53_ORYSJ Os12g0506700 LOC_Os12g32200 Os12g0506700 OsJ_36222 OSNPB_120506700 ENOG411E79N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os03g0244950 protein (Fragment) A0A0P0VVB5 A0A0P0VVB5_ORYSJ Os03g0244950 OSNPB_030244950 ENOG411E79K Q56ZM7 Q56ZM7_ARATH Heavy metal transport/detoxification superfamily protein 8869 Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:4010713945; AT5G05365 Heavy-metal-associated domain Os01g0826000 protein Q94D91 Q94D91_ORYSJ Os01g0826000 OsJ_03926 OSNPB_010826000 P0439E11.20 ENOG411E79I T19F11.9 Q9SRM8 Q9SRM8_ARATH At3g11690 (T19F11.9 protein) 27856 At3g11690 (T19F11.9 protein) locus:2098353; AT3G11690 NA NA NA NA NA NA NA NA ENOG411E79H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA T-complex protein 10 C-terminus NA NA NA NA NA NA NA ENOG411E797 Q8LBL7 Q8LBL7_ARATH At3g25855 (Copper transport protein family) 13084 At3g25855 (Copper transport protein family) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:505006377; AT3G25855 NA NA NA NA NA NA NA NA ENOG411E796 UPB1 O22901 BH151_ARATH Transcription factor UPBEAT1 (Basic helix-loop-helix protein 151) (AtbHLH151) (bHLH 151) (Transcription factor EN 146) (Transcription factor bHLH151) (bHLH transcription factor bHLH151) DISRUPTION PHENOTYPE: Enlargment of the meristem and longer root length. {ECO:0000269|PubMed:21074051}. longer root than the wild type; significant increase in cortex cell number indicating enlargement of the meristem. FUNCTION: Transcription factor that modulates the balance between cellular proliferation and differentiation in root growth. Does not act through cytokinin and auxin signaling, but by repressing peroxidase expression in the elongation zone. {ECO:0000269|PubMed:21074051}. 11879 Transcription factor UPBEAT1 (Basic helix-loop-helix protein 151) (AtbHLH151) (bHLH 151) (Transcription factor EN 146) (Transcription factor bHLH151) (bHLH transcription factor bHLH151) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; regulation of root development [GO:2000280]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the root vascular tissue and in root hairs and lateral root caps. Detected at the protein level in all cell files in the elongation zone. {ECO:0000269|PubMed:21074051}. locus:2065134; AT2G47270 Transcription factor NA NA NA NA NA NA NA ENOG411E795 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0644600 protein Q5VRC2 Q5VRC2_ORYSJ Os01g0644600 Os01g0644600 OsJ_02800 OSNPB_010644600 P0707D10.15 ENOG411E794 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E793 F4JLT3 F4JLT3_ARATH Transmembrane protein 24857 Transmembrane protein integral component of membrane [GO:0016021] locus:2130559; AT4G16400 NA NA NA NA NA NA NA NA ENOG411E792 O81889 O81889_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis-related protein-like) 18830 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis-related protein-like) extracellular region [GO:0005576]; negative regulation of response to salt stress [GO:1901001] locus:2134193; AT4G33730 extracellular protein Os07g0127500 protein (Putative pathogenesis-related protein) (cDNA clone:001-109-C06, full insert sequence),Os07g0125201 protein (Os07g0125400 protein) (Os07g0126100 protein) (Os07g0126500 protein) (Putative pathogenesis-related protein),Os07g0127700 protein (Fragment) Q6YSH3,Q84J99,A0A0P0X1X8 Q6YSH3_ORYSJ,Q84J99_ORYSJ,A0A0P0X1X8_ORYSJ Os07g0127500 Os07g0127500 B1249D05.19 OJ1212_C12.40 OSNPB_070127500,P0474G09.126 Os07g0125201 Os07g0126100 Os07g0126500 P0474G09.139 P0474G09.152 Os07g0125400 B1249D05.7 OJ1212_C12.16 OJ1212_C12.28 OJ1212_C12.3 OsJ_22951 OSNPB_070125201 OSNPB_070126100 OSNPB_070126500,Os07g0127700 OSNPB_070127700 ENOG411E791 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os07g0686300 protein (cDNA clone:001-105-D02, full insert sequence) Q8LIH1 Q8LIH1_ORYSJ OJ1200_C08.113 OJ1150_E04.109 Os07g0686300 OSNPB_070686300 ENOG411E790 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA and FBD domain containing protein expressed Os07g0285700 protein (Putative RNA apurinic site specific lyase),Os07g0285200 protein (Putative ribosomal RNA apurinic site specific lyase) (cDNA clone:J033022I08, full insert sequence),Os07g0286300 protein (Putative RNA apurinic site specific lyase),Os07g0286900 protein (Putative RNA apurinic site specific lyase),Os07g0286400 protein,Os12g0558400 protein,Os12g0557900 protein,Os12g0558366 protein,Os07g0285450 protein (Fragment) Q8GVM0,Q8GVM3,Q7F0P3,Q8GVU6,A0A0P0X4M0,A0A0P0YBG1,A0A0P0YBE0,A0A0P0YBA6,A0A0P0X4Y6 Q8GVM0_ORYSJ,Q8GVM3_ORYSJ,Q7F0P3_ORYSJ,Q8GVU6_ORYSJ,A0A0P0X4M0_ORYSJ,A0A0P0YBG1_ORYSJ,A0A0P0YBE0_ORYSJ,A0A0P0YBA6_ORYSJ,A0A0P0X4Y6_ORYSJ Os07g0285700 OsJ_23861 OSJNBb0091I19.122 OSNPB_070285700,Os07g0285200 OSJNBb0091I19.114 OSNPB_070285200,P0045F02.107 Os07g0286300 OsJ_23865 OSJNBb0091I19.131 OSNPB_070286300,P0045F02.116 Os07g0286900 OSNPB_070286900,Os07g0286400 OSNPB_070286400,Os12g0558400 OSNPB_120558400,Os12g0557900 OSNPB_120557900,Os12g0558366 OSNPB_120558366,Os07g0285450 OSNPB_070285450 ENOG411E798 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0260800 protein (cDNA clone:J023096E14, full insert sequence) Q9LE46 Q9LE46_ORYSJ Os01g0260800 OsJ_01180 OSNPB_010260800 P0469E09.1 P0699D11.20 ENOG411DU4X CLV2 O80809 CLV2_ARATH Leucine-rich repeat receptor-like protein CLAVATA2 (Receptor-like protein 10) (AtRLP10) DISRUPTION PHENOTYPE: Enlarged shoot and flower meristems, as well as alterations in the development of the gynoecia, flower pedicels, and stamens. Reduced sensitivity to CLV3, CLE19 and CLE40 peptides. {ECO:0000269|PubMed:16055633, ECO:0000269|PubMed:9729492}. Number of carpels not statistically significant form that of clv2-1 alone. Abnormal pistil, pedicel, and stamen development; Large shoot and floral meristems; Fasciated stems and inflorescences, early flowering, and rescued floral phenotypes under short days-S. Clark-1999 FUNCTION: Involved in the perception of CLV3 and CLV3-like (CLE) peptides, that act as extracellular signals regulating meristems maintenance. Involved in controlling the stem cell population size in shoot and root apical meristems, and during organ development. Promotes the formation of CLV1 multimers. In complex with CRN, perceives secreted CLV3-like effector proteins from plant-parasitic cyst nematodes as ligand mimics of the plant CLE signaling pathway (PubMed:21265896, PubMed:21750229). This recognition is required for proper feeding structure (syncytium) development and ultimately successful nematode infection (PubMed:21265896, PubMed:21750229). CLE14 perception by CLV2/CRN complex triggers root meristem differentiation (PubMed:20697738, PubMed:28586647). {ECO:0000269|PubMed:10521522, ECO:0000269|PubMed:16055633, ECO:0000269|PubMed:19897604, ECO:0000269|PubMed:19933383, ECO:0000269|PubMed:20697738, ECO:0000269|PubMed:21265896, ECO:0000269|PubMed:21750229, ECO:0000269|PubMed:28586647, ECO:0000269|PubMed:9729492}. 79228 Leucine-rich repeat receptor-like protein CLAVATA2 (Receptor-like protein 10) (AtRLP10) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; receptor serine/threonine kinase binding [GO:0033612]; meristem development [GO:0048507]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in apices (e.g. shoot apical meristem and flower buds), and, to a lower extent, in flowers, leaves, seedlings and siliques. {ECO:0000269|PubMed:10521522}. locus:2206245; AT1G65380 RECEPTOR-like protein Os02g0603100 protein (Putative fasciated ear2) Q6K8K0 Q6K8K0_ORYSJ OJ1669_F01.20 Os02g0603100 OSNPB_020603100 ENOG411DU4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DU4R EIF6-2,EIF6-1 Q9M060,O22290 IF62_ARATH,IF61_ARATH Eukaryotic translation initiation factor 6-2 (AteIF-6;2),Eukaryotic translation initiation factor 6-1 (AteIF-6;1) DISRUPTION PHENOTYPE: Causes embryonic lethality. {ECO:0000269|PubMed:20570652}. Embryo defective; Globular-D. Meinke-2003 FUNCTION: Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. {ECO:0000255|HAMAP-Rule:MF_03132}.,FUNCTION: Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. {ECO:0000255|HAMAP-Rule:MF_03132, ECO:0000269|PubMed:20570652}. 26482,26511 Eukaryotic translation initiation factor 6-2 (AteIF-6;2),Eukaryotic translation initiation factor 6-1 (AteIF-6;1) cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; preribosome, large subunit precursor [GO:0030687]; ribosomal large subunit binding [GO:0043023]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; assembly of large subunit precursor of preribosome [GO:1902626]; cellular response to abscisic acid stimulus [GO:0071215]; embryo development ending in seed dormancy [GO:0009793]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470]; mature ribosome assembly [GO:0042256]; ribosomal subunit export from nucleus [GO:0000054],cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; preribosome, large subunit precursor [GO:0030687]; ribosomal large subunit binding [GO:0043023]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; assembly of large subunit precursor of preribosome [GO:1902626]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470]; mature ribosome assembly [GO:0042256]; ribosomal subunit export from nucleus [GO:0000054] locus:2078921;,locus:2063927; AT3G55620,AT2G39820 Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (By similarity) Eukaryotic translation initiation factor 6 (eIF-6) Q5NAB6,Q8GVF5 Q5NAB6_ORYSJ,Q8GVF5_ORYSJ EIF6 Os01g0280500 B1085F09.12 OSNPB_010280500 P0003H10.23,OJ1340_C08.131 EIF6 Os07g0639800 OsJ_25302 OSNPB_070639800 FUNCTION: Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. {ECO:0000256|HAMAP-Rule:MF_03132}. ENOG411EKEM Q0V7R8,F4JHF7,A0A1P8AX14,Q58FV2 Q0V7R8_ARATH,F4JHF7_ARATH,A0A1P8AX14_ARATH,Q58FV2_ARATH Gamma-tubulin complex component,Spc97 / Spc98 family of spindle pole body (SBP) component 14688,17481,11437,14739 Gamma-tubulin complex component,Spc97 / Spc98 family of spindle pole body (SBP) component equatorial microtubule organizing center [GO:0000923]; gamma-tubulin ring complex [GO:0008274]; microtubule [GO:0005874]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; structural constituent of cytoskeleton [GO:0005200]; cytoplasmic microtubule organization [GO:0031122]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly [GO:0090307],equatorial microtubule organizing center [GO:0000923]; gamma-tubulin small complex [GO:0008275]; microtubule [GO:0005874]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; structural constituent of cytoskeleton [GO:0005200]; cytoplasmic microtubule organization [GO:0031122]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly [GO:0090307],cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule organizing center [GO:0005815]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; microtubule nucleation [GO:0007020] locus:505006233;,locus:504955465; AT1G80245,AT4G00695 NA NA NA NA NA NA NA NA ENOG411DPQZ ATC401 Q8S9D1,Q8GZ63,A0A1P8BEQ9,F4JY71 PP395_ARATH,PP397_ARATH,A0A1P8BEQ9_ARATH,F4JY71_ARATH Pentatricopeptide repeat-containing protein At5g21222 (SNF1-like protein kinase AtC401),Pentatricopeptide repeat-containing protein At5g25630,Tetratricopeptide repeat (TPR)-like superfamily protein 93143,63894,58120,66741 Pentatricopeptide repeat-containing protein At5g21222 (SNF1-like protein kinase AtC401),Pentatricopeptide repeat-containing protein At5g25630,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; endonuclease activity [GO:0004519]; protein kinase activity [GO:0004672]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:1005716169;,locus:2179444; AT5G21222,AT5G25630 Pentatricopeptide repeat-containing protein Os01g0228400 protein (Putative leaf protein) (cDNA clone:001-114-A12, full insert sequence) Q8W0A6 Q8W0A6_ORYSJ Os01g0228400 Os01g0228400 OSNPB_010228400 P0452F10.21 ENOG411EEKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1FY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF Os08g0365500 protein (Putative wall-associated kinase),Os02g0808300 protein (Wall-associated kinase 4-like),Os08g0365800 protein,Os07g0169300 protein Q8H4V7,Q6K9A8,A0A0P0XEX4,A0A0P0X311 Q8H4V7_ORYSJ,Q6K9A8_ORYSJ,A0A0P0XEX4_ORYSJ,A0A0P0X311_ORYSJ OJ1484_G09.121 Os08g0365500 OsJ_27073 OSNPB_080365500,Os02g0808300 OJ1112_G06.7 OJ1520_C09.19 OSNPB_020808300,Os08g0365800 OSNPB_080365800,Os07g0169300 OSNPB_070169300 ENOG411E1FZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TBC Os11g0479300 protein A0A0P0Y2G3 A0A0P0Y2G3_ORYSJ Os11g0479300 OSNPB_110479300 ENOG411E1FP ABCG25 Q84TH5 AB25G_ARATH ABC transporter G family member 25 (ABC transporter ABCG.25) (AtABCG25) (White-brown complex homolog protein 26) (AtWBC26) 72903 ABC transporter G family member 25 (ABC transporter ABCG.25) (AtABCG25) (White-brown complex homolog protein 26) (AtWBC26) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; abscisic acid transport [GO:0080168]; response to abscisic acid [GO:0009737] locus:2016089; AT1G71960 ABC transporter G family member NA NA NA NA NA NA NA ENOG411E1FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENT domain Os03g0796400 protein (Fragment) A0A0P0W487 A0A0P0W487_ORYSJ Os03g0796400 OSNPB_030796400 ENOG411E1FV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os01g0935000 protein (Putative zinc finger protein) (cDNA clone:J023050E05, full insert sequence) Q942Y7 Q942Y7_ORYSJ Os01g0935000 Os01g0935000 OSNPB_010935000 P0423A12.42 P0492G09.12 ENOG411E1FH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyl-CpG binding domain NA NA NA NA NA NA NA ENOG411E1FI F4JNM3,F4JNM2,F4ITF9 F4JNM3_ARATH,F4JNM2_ARATH,F4ITF9_ARATH Regulator of Vps4 activity in the MVB pathway protein R-ATH-6798695; 116100,119290,104927 Regulator of Vps4 activity in the MVB pathway protein protein transport [GO:0015031] locus:2118334;,locus:2052035; AT4G29440,AT2G19710 Regulator of Vps4 activity in the MVB pathway MAPK activating protein-like (Os01g0706400 protein) (cDNA clone:J013092D23, full insert sequence),Os01g0706400 protein,Os01g0706400 protein (Fragment) Q5N8F0,Q5N8E9,A0A0P0V760 Q5N8F0_ORYSJ,Q5N8E9_ORYSJ,A0A0P0V760_ORYSJ P0692C11.22-1 Os01g0706400 OSNPB_010706400,P0692C11.22-2 Os01g0706400 OSNPB_010706400,Os01g0706400 OSNPB_010706400 ENOG411E1FK MYOB4 F4INW9 MYOB4_ARATH Probable myosin-binding protein 4 DISRUPTION PHENOTYPE: No visible phenotype. Myob1, myob2, myob3 and myob4 quadruple mutant has a significant height reduction, a reduced rosette diameter and a delayed flowering. {ECO:0000269|PubMed:23995081}. FUNCTION: Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment. {ECO:0000305|PubMed:23995081}. 85659 Probable myosin-binding protein 4 endomembrane system [GO:0012505]; integral component of membrane [GO:0016021] locus:2054467; AT2G30690 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411E1FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0756700 protein A0A0P0W356 A0A0P0W356_ORYSJ Os03g0756700 OSNPB_030756700 ENOG411E1FD Q1ECQ5 Q1ECQ5_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At4g02485) 25791 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At4g02485) nuclear chromatin [GO:0000790]; ferrous iron binding [GO:0008198]; histone binding [GO:0042393]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [GO:0016706]; protein hydroxylation [GO:0018126] locus:505006428; AT4G02485 2OG-Fe(II) oxygenase superfamily Os11g0657200 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed) (cDNA clone:006-211-E11, full insert sequence) Q2R067 Q2R067_ORYSJ Os11g0657200 LOC_Os11g43610 Os11g0657200 OsJ_34702 OSNPB_110657200 ENOG411E1FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) Os05g0345700 protein (cDNA clone:J023121M11, full insert sequence),Os05g0115500 protein B7F743,B9FKC3 B7F743_ORYSJ,B9FKC3_ORYSJ Os05g0345700 OSNPB_050345700,Os05g0115500 OsJ_16887 OSNPB_050115500 ENOG411E1F8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411E1F9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 and GRAM domain-containing protein Os08g0492400 protein (Fragment) A0A0P0XHQ1 A0A0P0XHQ1_ORYSJ Os08g0492400 OSNPB_080492400 ENOG411E1F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0130200 protein (Putative receptor kinase Lecrk) Q6YT57 Q6YT57_ORYSJ Os07g0130200 Os07g0130200 OSJNBa0088O14.28 OSNPB_070130200 ENOG411E1F4 F7A19.27 Q9XI69,Q9XI68,A0A1P8APH9 Q9XI69_ARATH,Q9XI68_ARATH,A0A1P8APH9_ARATH At1g14180/F7A19_27 (F7A19.27 protein) (Glucose-methanol-choline (GMC) oxidoreductase family protein),F7A19.28 protein (Glucose-methanol-choline (GMC) oxidoreductase family protein),Glucose-methanol-choline (GMC) oxidoreductase family protein ARA:AT1G14185-MONOMER;,ARA:AT1G14190-MONOMER; R-ATH-6798163; 55420,55138,57506 At1g14180/F7A19_27 (F7A19.27 protein) (Glucose-methanol-choline (GMC) oxidoreductase family protein),F7A19.28 protein (Glucose-methanol-choline (GMC) oxidoreductase family protein),Glucose-methanol-choline (GMC) oxidoreductase family protein flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:505006121;,locus:2035830; AT1G14185,AT1G14190 GMC oxidoreductase NA NA NA NA NA NA NA ENOG411E1F6 Q9LZB2 GDL74_ARATH GDSL esterase/lipase At5g03980 (EC 3.1.1.-) (Extracellular lipase At5g03980) ARA:AT5G03980-MONOMER; 3.1.1.- 35695 GDSL esterase/lipase At5g03980 (EC 3.1.1.-) (Extracellular lipase At5g03980) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2150675; AT5G03980 GDSL-like Lipase Acylhydrolase family protein GDSL-like Lipase/Acylhydrolase family protein, expressed (Os11g0521000 protein) Q2R3H2 Q2R3H2_ORYSJ LOC_Os11g31940 Os11g0521000 OSNPB_110521000 ENOG411DTWJ MRC8.20 A0A1P8ARP5,Q9LV19,Q0WLF0,Q9C742,Q9FIX4,A0A1P8ARR0,A0A1P8BEX9,A0A1P8ARP7,A0A1P8BEW5,A0A1P8AQX1,A0A1P8AQY4,A0A1P8ARQ3,A0A1P8BF15,F4HV54,F4HYK1,F4K794 A0A1P8ARP5_ARATH,Q9LV19_ARATH,Q0WLF0_ARATH,Q9C742_ARATH,Q9FIX4_ARATH,A0A1P8ARR0_ARATH,A0A1P8BEX9_ARATH,A0A1P8ARP7_ARATH,A0A1P8BEW5_ARATH,A0A1P8AQX1_ARATH,A0A1P8AQY4_ARATH,A0A1P8ARQ3_ARATH,A0A1P8BF15_ARATH,F4HV54_ARATH,F4HYK1_ARATH,F4K794_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g18210) (Uncharacterized protein MRC8.20),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein At1g48740),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein F11I4_9),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Gb|AAB72163.1),Pentatricopeptide repeat (PPR) superfamily protein 32677,45179,47665,45556,42510,27837,46368,30009,41147,44117,34827,37064,35781,31127,34109,47731 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g18210) (Uncharacterized protein MRC8.20),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein At1g48740),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein F11I4_9),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Gb|AAB72163.1),Pentatricopeptide repeat (PPR) superfamily protein iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2092727;,locus:2008149;,locus:2202618;,locus:2008189;,locus:2158327; AT3G18210,AT1G48740,AT1G47940,AT1G48700,AT5G43660 P4Hc Os01g0502400 protein (Oxidoreductase, 2OG-Fe(II) oxygenase-like protein) (cDNA clone:001-035-A03, full insert sequence) (cDNA clone:001-207-B12, full insert sequence) Q5QMV1 Q5QMV1_ORYSJ Os01g0502400 Os01g0502400 B1080D07.43 OSNPB_010502400 P0507H06.16 ENOG411EEAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os01g0532700 protein A0A0N7KD36 A0A0N7KD36_ORYSJ Os01g0532700 OSNPB_010532700 ENOG411EMN4 Q9SGJ0 Q9SGJ0_ARATH EEIG1/EHBP1 protein amino-terminal domain protein (F28J7.14 protein) (Uncharacterized protein At3g01810/F28J7_14) 101704 EEIG1/EHBP1 protein amino-terminal domain protein (F28J7.14 protein) (Uncharacterized protein At3g01810/F28J7_14) nuclear pore inner ring [GO:0044611]; plasma membrane [GO:0005886]; structural constituent of nuclear pore [GO:0017056]; nuclear pore organization [GO:0006999] locus:2082319; AT3G01810 NA NA NA NA NA NA NA NA ENOG411EMEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3523) NA NA NA NA NA NA NA ENOG411E56X Q9LSA1,A8MRE5 Q9LSA1_ARATH,A8MRE5_ARATH Translation elongation factor EF1B/ribosomal protein S6 family protein (Uncharacterized protein At3g18760) (Uncharacterized protein At3g18760/MVE11_12),Translation elongation factor EF1B/ribosomal protein S6 family protein 15966,15409 Translation elongation factor EF1B/ribosomal protein S6 family protein (Uncharacterized protein At3g18760) (Uncharacterized protein At3g18760/MVE11_12),Translation elongation factor EF1B/ribosomal protein S6 family protein ribosome [GO:0005840]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; translation elongation factor activity [GO:0003746],ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation elongation factor activity [GO:0003746] locus:2094009; AT3G18760 ribosomal protein S6 Os01g0220300 protein (cDNA clone:001-104-E12, full insert sequence) Q9LWD2 Q9LWD2_ORYSJ Os01g0220300 Os01g0220300 OSNPB_010220300 P0483F08.18 ENOG411EF5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF5J GRXS13 Q84TF4,A0A1P8AQF1 GRS13_ARATH,A0A1P8AQF1_ARATH Monothiol glutaredoxin-S13 (AtGrxS13) (Protein ROXY 18),Glutaredoxin family protein FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 16366,17158 Monothiol glutaredoxin-S13 (AtGrxS13) (Protein ROXY 18),Glutaredoxin family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; defense response to fungus [GO:0050832]; response to cytokinin [GO:0009735]; response to photooxidative stress [GO:0080183] locus:2024162; AT1G03850 Glutaredoxin NA NA NA NA NA NA NA ENOG411E2XW F4JK28,Q9SST2 F4JK28_ARATH,Q9SST2_ARATH Mitochondrial transcription termination factor family protein,At4g09620 (Mitochondrial transcription termination factor family protein) (Uncharacterized protein AT4g09620) 24009,23749 Mitochondrial transcription termination factor family protein,At4g09620 (Mitochondrial transcription termination factor family protein) (Uncharacterized protein AT4g09620) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380],double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355] locus:2136902; AT4G09620 NA Expressed protein (Os03g0838900 protein) (cDNA clone:J013088J21, full insert sequence) Q851N3 Q851N3_ORYSJ OSJNBa0042I09.11 LOC_Os03g62240 Os03g0838900 OsJ_13295 OSNPB_030838900 ENOG411E56W A0A1P8AZN6,O82326,Q9SYZ4 A0A1P8AZN6_ARATH,O82326_ARATH,Q9SYZ4_ARATH SWIB/MDM2 domain superfamily protein,Expressed protein (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein At2g14880; T26I20.4),SWIB/MDM2 domain superfamily protein (Uncharacterized protein At4g34290) 11654,15903,15999 SWIB/MDM2 domain superfamily protein,Expressed protein (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein At2g14880; T26I20.4),SWIB/MDM2 domain superfamily protein (Uncharacterized protein At4g34290) locus:2060469;,locus:2116189; AT2G14880,AT4G34290 domain-containing protein Os03g0761000 protein (SWIB complex BAF60b domain-containing protein, putative, expressed) (cDNA, clone: J100037D16, full insert sequence) Q94H99 Q94H99_ORYSJ Os03g0761000 LOC_Os03g55310 OSJNBb0048A17.21 OSNPB_030761000 ENOG411EF5G F26C17.9 Q9FH44,Q9S9L0,Q9SW62,F4KA15,F4I9G9,F4I3A8,F4I9H0,F4IPG2,F4IPG3 Q9FH44_ARATH,Q9S9L0_ARATH,Q9SW62_ARATH,F4KA15_ARATH,F4I9G9_ARATH,F4I3A8_ARATH,F4I9H0_ARATH,F4IPG2_ARATH,F4IPG3_ARATH Ulp1 protease family protein,F26C17.9 protein (Ulp1 protease family protein),Ulp1 protease family protein (Uncharacterized protein AT4g08430) (Uncharacterized protein C18G5.10),Cysteine proteinase superfamily protein,Cysteine proteinases superfamily protein 105806,65105,92519,31242,34197,70548,33443,58831,61691 Ulp1 protease family protein,F26C17.9 protein (Ulp1 protease family protein),Ulp1 protease family protein (Uncharacterized protein AT4g08430) (Uncharacterized protein C18G5.10),Cysteine proteinase superfamily protein,Cysteine proteinases superfamily protein cysteine-type peptidase activity [GO:0008234],peptidase activity [GO:0008233] locus:2157141;,locus:504955085;,locus:2115860;,locus:2184221;,locus:4515102645;,locus:2203058;,locus:2055666; AT5G45570,AT5G28235,AT4G08430,AT5G28810,AT1G42525,AT1G37020,AT2G10260 Ulp1 protease family protein NA NA NA NA NA NA NA ENOG411E2XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0487600 protein) (cDNA clone:006-202-E12, full insert sequence) (cDNA clone:006-208-F02, full insert sequence) (cDNA clone:J023067B14, full insert sequence),Expressed protein (Os10g0487600 protein),Os08g0141000 protein,Os08g0518350 protein,Os08g0140700 protein (Fragment) Q109I2,Q109I1,Q0J830,Q84Z83,A0A0P0XC65 Q109I2_ORYSJ,Q109I1_ORYSJ,Q0J830_ORYSJ,Q84Z83_ORYSJ,A0A0P0XC65_ORYSJ LOC_Os10g34614 Os10g0487600 OsJ_31959 OSNPB_100487600,Os10g0487600 LOC_Os10g34614 OSNPB_100487600,Os08g0141000 Os08g0141000 OsJ_25998 OSNPB_080141000,P0700D12.123 Os08g0518350 OsJ_27945 OSNPB_080518350,Os08g0140700 OSNPB_080140700 ENOG411E2XK AGD15 Q0WQQ1,A0A1I9LR21,A0A1I9LR19,A0A1I9LR20,A0A1I9LR18 AGD15_ARATH,A0A1I9LR21_ARATH,A0A1I9LR19_ARATH,A0A1I9LR20_ARATH,A0A1I9LR18_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 (ARF GAP AGD15) (Protein ARF-GAP DOMAIN 15) (AtAGD15),ARF-GAP domain 15 FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). {ECO:0000250}. 26210,24966,20729,22141,27874 Probable ADP-ribosylation factor GTPase-activating protein AGD15 (ARF GAP AGD15) (Protein ARF-GAP DOMAIN 15) (AtAGD15),ARF-GAP domain 15 GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872] locus:2090517; AT3G17660 ADP-ribosylation factor GTPase-activating protein NA NA NA NA NA NA NA ENOG411E56Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fip1 motif NA NA NA NA NA NA NA ENOG411E2XD YAB4,INO Q9LDT3,A0A1P8APE2 YAB4_ARATH,A0A1P8APE2_ARATH Axial regulator YABBY 4 (Protein INNER NO OUTER),Plant-specific transcription factor YABBY family protein Outer integument of the ovule is absent and the inner integument is replaced by a relatively amorphous collar-like structure. Abnormal integuments-C. Gasser-1999 FUNCTION: Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. 25957,29633 Axial regulator YABBY 4 (Protein INNER NO OUTER),Plant-specific transcription factor YABBY family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant ovule development [GO:0048481]; polarity specification of adaxial/abaxial axis [GO:0009944],multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. locus:2028020; AT1G23420 axial regulator YABBY 4-like NA NA NA NA NA NA NA ENOG411EKB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rpp14/Pop5 family Os05g0270500 protein,Os04g0295100 protein,Os10g0191600 protein (Fragment) A0A0P0WJY7,A0A0P0W8H6,A0A0N7KRJ5 A0A0P0WJY7_ORYSJ,A0A0P0W8H6_ORYSJ,A0A0N7KRJ5_ORYSJ Os05g0270500 OSNPB_050270500,Os04g0295100 OSNPB_040295100,Os10g0191600 OSNPB_100191600 ENOG411EF5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E46X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os01g0864500 protein (Putative harpin inducing protein) (Putative harpin inducing protein NDR3) (cDNA clone:J013135B08, full insert sequence) Q94CU7 Q94CU7_ORYSJ NDR3 Os01g0864500 OSNPB_010864500 P0423B08.35 P0505D12.1 ENOG411E46Q rpl20 P56794 RK20_ARATH 50S ribosomal protein L20, chloroplastic FUNCTION: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). {ECO:0000250}. 14163 50S ribosomal protein L20, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:504954689; ATCG00660 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity) 50S ribosomal protein L20, chloroplastic P12139 RK20_ORYSJ rpl20 LOC_Osp1g00580 FUNCTION: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). {ECO:0000250}. ENOG411E46S PEI1 O65036 C3H54_ARATH Zinc finger CCCH domain-containing protein 54 (AtC3H54) Embryo defective; Cotyledon-T. Thomas-2002 FUNCTION: Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. MISCELLANEOUS: Plants lacking PEI1 produce white seeds in which embryo development does not progress through heart stage. 28175 Zinc finger CCCH domain-containing protein 54 (AtC3H54) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; embryo development ending in seed dormancy [GO:0009793]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}. locus:2183339; AT5G07500 Transcription factor NA NA NA NA NA NA NA ENOG411E46U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain OSJNBa0089K21.15 protein (OSJNBb0022F23.3 protein) (Os04g0472200 protein) (cDNA clone:002-168-B08, full insert sequence) Q7X7S7 Q7X7S7_ORYSJ Os04g0472200 OSJNBa0089K21.15 OSJNBb0022F23.3 OSNPB_040472200 ENOG411E46V F4JHA1 F4JHA1_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 17202 Plant invertase/pectin methylesterase inhibitor superfamily protein cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2137864; AT4G02250 Invertase pectin methylesterase inhibitor family protein Os03g0830800 protein (Pectinesterase inhibitor domain containing protein, expressed) (Putative plant invertase/pectin methylesterase inhibitor) (cDNA clone:002-149-E11, full insert sequence) Q850Z1 Q850Z1_ORYSJ OSJNBb0027B08.14 LOC_Os03g61530 Os03g0830800 OsJ_13223 OSJNBa0078D06.14 OSNPB_030830800 ENOG411E46I EMB1687 Q6AWV1 POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5 (EC 3.1.26.5) (Protein EMBRYO DEFECTIVE 1687) Embryo defective; Globular-D. Meinke-2002 FUNCTION: Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP (By similarity). {ECO:0000250}. 3.1.26.5 17017 Probable ribonuclease P/MRP protein subunit POP5 (EC 3.1.26.5) (Protein EMBRYO DEFECTIVE 1687) nucleolus [GO:0005730]; vacuole [GO:0005773]; ribonuclease P activity [GO:0004526]; protein lipoylation [GO:0009249]; tRNA processing [GO:0008033] locus:504956160; AT1G04635 ribonuclease P MRP protein subunit NA NA NA NA NA NA NA ENOG411E46H BLT F4I878,A0A1P8ARI7,A0A1P8ARL0 BLT_ARATH,A0A1P8ARI7_ARATH,A0A1P8ARL0_ARATH Protein BRANCHLESS TRICHOME,Branchless trichome DISRUPTION PHENOTYPE: Shows trichomes with no branching. {ECO:0000269|PubMed:19626137, ECO:0000269|PubMed:21558384}. branchless trichomes with blunt tips FUNCTION: Acts as a key regulator of trichome branching. Could participate with STI in the same pathway. Also plays a role in integrating endoreplication levels with cell shape. {ECO:0000269|PubMed:19626137, ECO:0000269|PubMed:21558384}. 32599,38555,33995 Protein BRANCHLESS TRICHOME,Branchless trichome trichome branching [GO:0010091]; trichome morphogenesis [GO:0010090] locus:2010876; AT1G64690 NA Expressed protein (Os10g0562600 protein) Q7XC47 Q7XC47_ORYSJ Os10g0562600 LOC_Os10g41300 OSNPB_100562600 ENOG411E46K P93739,Q8RXJ5,A0A1P8AYV4 P93739_ARATH,Q8RXJ5_ARATH,A0A1P8AYV4_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At2g42080),Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At3g58020),DnaJ domain protein 30839,29567,24343 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At2g42080),Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At3g58020),DnaJ domain protein mitochondrion [GO:0005739]; brassinosteroid mediated signaling pathway [GO:0009742]; hyperosmotic salinity response [GO:0042538]; regulation of ATP metabolic process [GO:1903578]; regulation of unidimensional cell growth [GO:0051510]; response to high light intensity [GO:0009644],nucleus [GO:0005634] locus:2064622;,locus:2095818; AT2G42080,AT3G58020 DNAJ heat shock N-terminal domain-containing protein Os07g0470800 protein Q0D6K5 Q0D6K5_ORYSJ Os07g0470800 Os07g0470800 OSNPB_070470800 ENOG411E46J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0806600 protein) (cDNA clone:J023067J19, full insert sequence) Q10BS2 Q10BS2_ORYSJ Os03g0806600 LOC_Os03g59180 Os03g0806600 OSNPB_030806600 ENOG411E46M dl3250c O23298 O23298_ARATH AT4g14420/dl3250c (Elicitor like protein) (HR-like lesion-inducing protein-like protein) 17427 AT4g14420/dl3250c (Elicitor like protein) (HR-like lesion-inducing protein-like protein) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] locus:2129720; AT4G14420 Nicotiana lesion-inducing like Os10g0445500 protein (cDNA clone:J033003G06, full insert sequence),Expressed protein (Os03g0149200 protein) (cDNA, clone: J100081K13, full insert sequence),OSJNBa0027O01.6 protein (Os04g0181100 protein) (cDNA, clone: J065204I08, full insert sequence) Q0IXE1,Q8H080,Q7XSC5 Q0IXE1_ORYSJ,Q8H080_ORYSJ,Q7XSC5_ORYSJ Os10g0445500 Os10g0445500 OsJ_31692 OSNPB_100445500,Os03g0149200 LOC_Os03g05520 Os03g0149200 OSJNBb0050N02.11 OSNPB_030149200,Os04g0181100 OsJ_13977 OSJNBa0027O01.6 OSNPB_040181100 ENOG411E46N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain containing protein, expressed (AP2 domain, putative) (Os11g0242300 protein) Q53N79 Q53N79_ORYSJ Os11g0242300 LOC_Os11g13840 OSNPB_110242300 ENOG411E46A KTI1 Q8RXD5 KTI1_ARATH Kunitz trypsin inhibitor 1 (AtKTI1) (Trypsin protease inhibitor) DISRUPTION PHENOTYPE: Enhanced lesion development after infiltration of leaf tissue with the programmed cell death (PCD)-eliciting fungal toxin fumonisin B1 (FB1) or the avirulent bacterial pathogen P.syringae pv. tomato DC3000 carrying avrB (Pst avrB). Enhanced resistance to the virulent pathogen E.carotovora subsp. carotovora SCC1. {ECO:0000269|PubMed:19825555}. FUNCTION: Exhibits Kunitz trypsin protease inhibitor activity. Involved in modulating programmed cell death (PCD) in plant-pathogen interactions. {ECO:0000269|PubMed:19825555}. 23793 Kunitz trypsin inhibitor 1 (AtKTI1) (Trypsin protease inhibitor) mitochondrion [GO:0005739]; endopeptidase inhibitor activity [GO:0004866]; defense response to bacterium [GO:0042742]; programmed cell death [GO:0012501]; response to hydrogen peroxide [GO:0042542]; response to insect [GO:0009625]; response to molecule of bacterial origin [GO:0002237]; response to molecule of fungal origin [GO:0002238]; response to nematode [GO:0009624]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:16236154}. locus:2197249; AT1G73260 trypsin and protease inhibitor family protein Kunitz family protein Alpha-amylase/subtilisin inhibitor (RASI) P29421 IAAS_ORYSJ RASI Os04g0526600 LOC_Os04g44470 OSJNBa0038O10.14 FUNCTION: This protein inhibits independently subtilisin and T.castaneum alpha-amylase but not barley alpha-amylase. ENOG411E46C EDA34,T9L24.51 O81315,Q9FDZ8 O81315_ARATH,Q9FDZ8_ARATH Calcium-binding EF-hand family protein (F6N15.19 protein) (Uncharacterized protein AT4g00140),At1g73440 (Calmodulin-like protein) (Uncharacterized protein T9L24.51) 28687,28253 Calcium-binding EF-hand family protein (F6N15.19 protein) (Uncharacterized protein AT4g00140),At1g73440 (Calmodulin-like protein) (Uncharacterized protein T9L24.51) polar nucleus fusion [GO:0010197],calcium ion binding [GO:0005509] locus:2126886;,locus:2206870; AT4G00140,AT1G73440 NA OSJNBb0020O11.16 protein (Os04g0534300 protein) (cDNA clone:J013043D04, full insert sequence) Q7XU75 Q7XU75_ORYSJ Os04g0534300 Os04g0534300 OsJ_15591 OSJNBb0020O11.16 OSNPB_040534300 ENOG411E46E ERF073,ERF73 Q8H0T5,F4IDA7,B3H5K8 ERF73_ARATH,F4IDA7_ARATH,B3H5K8_ARATH Ethylene-responsive transcription factor ERF073,Integrase-type DNA-binding superfamily protein FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 23661,29094,28950 Ethylene-responsive transcription factor ERF073,Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to ethylene stimulus [GO:0071369]; cellular response to hypoxia [GO:0071456]; ethylene-activated signaling pathway [GO:0009873]; regulation of transcription, DNA-templated [GO:0006355]; response to anoxia [GO:0034059]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2194007; AT1G72360 AP2 EREB-like protein (Os07g0617000 protein) (cDNA clone:006-205-F01, full insert sequence) (cDNA clone:006-206-B03, full insert sequence) (cDNA clone:J013090P08, full insert sequence),Os10g0390800 protein Q7X826,Q0IXY8 Q7X826_ORYSJ,Q0IXY8_ORYSJ P0552F09.103 B1056G08.120 Os07g0617000 OsJ_25135 OSNPB_070617000,Os10g0390800 OSNPB_100390800 ENOG411E46D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os09g0572800 protein (cDNA clone:J023010B15, full insert sequence),Os07g0590500 protein Q0IZF0,A0A0P0X8K5 Q0IZF0_ORYSJ,A0A0P0X8K5_ORYSJ Os09g0572800 Os09g0572800 OSNPB_090572800,Os07g0590500 OSNPB_070590500 ENOG411E46G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0414400 protein) (cDNA clone:001-021-H01, full insert sequence) (cDNA clone:J023121E03, full insert sequence) Q75IY5 Q75IY5_ORYSJ Os03g0414400 LOC_Os03g30092 Os03g0414400 OsJ_11261 OSJNBa0039N21.19 OSNPB_030414400 ENOG411E46F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 Os09g0100800 protein (Tyrosine specific protein phosphatase-like) (cDNA clone:J023081P06, full insert sequence),Os10g0177800 protein Q651G2,Q8LNC0 Q651G2_ORYSJ,Q8LNC0_ORYSJ Os09g0100800 Os09g0100800 OSJNBb0023E08.28 OSNPB_090100800,Os10g0177800 LOC_Os10g09910 OsJ_30879 OSJNBa0047G15.7 OSNPB_100177800 ENOG411E461 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os07g0524000 protein (Fragment) A0A0P0X775 A0A0P0X775_ORYSJ Os07g0524000 OSNPB_070524000 ENOG411E460 O22969,Q9LP53 Y2416_ARATH,Q9LP53_ARATH Uncharacterized protein At2g34160,Alba DNA/RNA-binding protein (At1g29250/F28N24_8) (F28N24.7 protein) 14617,14574 Uncharacterized protein At2g34160,Alba DNA/RNA-binding protein (At1g29250/F28N24_8) (F28N24.7 protein) cytosol [GO:0005829]; nucleic acid binding [GO:0003676],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729] locus:2055516;,locus:2029949; AT2G34160,AT1G29250 Alba Os01g0173100 protein (cDNA clone:J023073M05, full insert sequence) Q94E63 Q94E63_ORYSJ Os01g0173100 Os01g0173100 OsJ_00565 OSJNBa0089K24.5 OSNPB_010173100 ENOG411E463 Q9LUH6 Q9LUH6_ARATH At5g43180 (Genomic DNA, chromosome 5, TAC clone:K24F5) (Uncharacterized protein At5g43180) 26539 At5g43180 (Genomic DNA, chromosome 5, TAC clone:K24F5) (Uncharacterized protein At5g43180) integral component of membrane [GO:0016021] locus:2156476; AT5G43180 Protein of unknown function DUF599 NA NA NA NA NA NA NA ENOG411E467 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Proteasome subunit NA NA NA NA NA NA NA ENOG411E466 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os04g0655700 protein (Fragment) A0A0P0WFU1 A0A0P0WFU1_ORYSJ Os04g0655700 OSNPB_040655700 ENOG411EF59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S6 NA NA NA NA NA NA NA ENOG411EKBH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Integrator complex subunit 9 Os03g0243200 protein A0A0P0VVB4 A0A0P0VVB4_ORYSJ Os03g0243200 OSNPB_030243200 ENOG411EF7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EF7P MKP11.1 Q9FYN3 Q9FYN3_ARATH At5g17340 (Putative membrane lipoprotein) 17810 At5g17340 (Putative membrane lipoprotein) locus:2167250; AT5G17340 NA NA NA NA NA NA NA NA ENOG411EF7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ripening-related protein NA NA NA NA NA NA NA ENOG411EF7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0368666 protein,Os03g0143150 protein (Fragment) A0A0N7KKM9,A0A0P0VSX9 A0A0N7KKM9_ORYSJ,A0A0P0VSX9_ORYSJ Os05g0368666 OSNPB_050368666,Os03g0143150 OSNPB_030143150 ENOG411EF7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA processing NA NA NA NA NA NA NA ENOG411EKBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os11g0533800 protein) (cDNA clone:J023037G05, full insert sequence),Os11g0532600 protein (Fragment) Q2R369,A0A0N7KT07 Q2R369_ORYSJ,A0A0N7KT07_ORYSJ Os11g0533800 LOC_Os11g32940 Os11g0533800 OSNPB_110533800,Os11g0532600 OSNPB_110532600 ENOG411EF7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI NA NA NA NA NA NA NA ENOG411EF7I Q1G3C3,Q2V3J8,Q3ECT3,F4HPY3 Q1G3C3_ARATH,Q2V3J8_ARATH,Q3ECT3_ARATH,F4HPY3_ARATH Reverse transcriptase-like protein,RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,Ribonuclease 11571,17110,10883,33382 Reverse transcriptase-like protein,RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,Ribonuclease RNA-directed DNA polymerase activity [GO:0003964] locus:4515102869;,locus:1009023330;,locus:2031020;,locus:2036489; AT2G19146,AT4G10613,AT1G50080,AT1G60720 RNA-directed DNA polymerase (reverse NA NA NA NA NA NA NA ENOG411EF7J Q9CAI6 Q9CAI6_ARATH At1g72720 (Uncharacterized protein At1g72720/F28P22_9) (Uncharacterized protein F28P22.9) 14703 At1g72720 (Uncharacterized protein At1g72720/F28P22_9) (Uncharacterized protein F28P22.9) locus:2030295; AT1G72720 Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411EF7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PDS5 regulator of cohesion maintenance homolog NA NA NA NA NA NA NA ENOG411E004 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0170100 protein (Putative wall-associated kinase 4),Os06g0169100 protein Q5VRE1,A3B8T2 Q5VRE1_ORYSJ,A3B8T2_ORYSJ Os06g0170100 OSJNBa0033B09.36 OSNPB_060170100 P0675A05.2,Os06g0169100 OsJ_20274 OSNPB_060169100 ENOG411E003 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411E002 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os01g0672100 protein,Os05g0563000 protein (cDNA clone:J023145A15, full insert sequence) C7IWQ1,Q6AUG9 C7IWQ1_ORYSJ,Q6AUG9_ORYSJ Os01g0672100 Os01g0672100 OSNPB_010672100,Os05g0563000 OsJ_19547 OSJNBb0053D02.2 OSNPB_050563000 ENOG411E000 SWEET15 Q9FY94 SWT15_ARATH Bidirectional sugar transporter SWEET15 (AtSWEET15) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 15) (Senescence-associated protein 29) DISRUPTION PHENOTYPE: Reduced sensitivity to high salinity. In plants lacking SWEET11, SWEET12 and SWEET15, severe seed defects, which include retarded embryo development, reduced seed weight, and reduced starch and lipid content, causing a wrinkled seed phenotype. Altered sucrose efflux involved in the transfer of sugars from seed coat to embryos thus leading to starch accumulation in the seed coat but not in the embryo (PubMed:25794936). {ECO:0000269|PubMed:20963606, ECO:0000269|PubMed:25794936}. Resistant to salt-C. Park-2011 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. Regulates cell viability under high salinity. Promotes senescence and sensitivity to salt stress (PubMed:20963606). Contributes to seed filling by triggering sucrose efflux involved in the transfer of sugars from seed coat to embryos (PubMed:25988582). {ECO:0000269|PubMed:20963606, ECO:0000269|PubMed:22157085, ECO:0000269|PubMed:25794936, ECO:0000303|PubMed:25988582}. R-ATH-189200; 32936 Bidirectional sugar transporter SWEET15 (AtSWEET15) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 15) (Senescence-associated protein 29) Golgi membrane [GO:0000139]; integral component of plasma membrane [GO:0005887]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to osmotic stress [GO:0071470]; cellular response to salicylic acid stimulus [GO:0071446]; embryo development ending in seed dormancy [GO:0009793]; leaf senescence [GO:0010150]; seed maturation [GO:0010431]; sucrose transport [GO:0015770] DEVELOPMENTAL STAGE: In seedlings, expressed at low levels in the petioles (at protein level) (PubMed:25794936). In young plants, mainly expressed in the roots, particularly in the tips and primordia of lateral roots. In flowering plants, first observed at high levels in young buds of the inflorescence (at protein level), later detected in reproductive tissues, such as pollen grains and ovules. In developing seeds, accumulates specifically at different stages. At globular stage, mostly present in outer integument, but also in endosperm and embryo. At the heart stage, only observed in endosperm and embryo. From the linear mature cotyledon stage until mature seed, accumulates in outer integument and in micropylar endosperm. Detected at low levels in senescent leaves (at protein level) despite a high transcription induction during senescence (PubMed:25794936). {ECO:0000269|PubMed:20963606, ECO:0000269|PubMed:25794936}. TISSUE SPECIFICITY: Accumulates in leaves during senescence, in a SA-independent manner. Expressed in the lateral roots and in flowers. Expressed in developing seeds (PubMed:25794936). {ECO:0000269|PubMed:10412905, ECO:0000269|PubMed:20963606, ECO:0000269|PubMed:25794936}. locus:2179867; AT5G13170 bidirectional sugar transporter Bidirectional sugar transporter SWEET15 (OsSWEET15) Q6K602 SWT15_ORYSJ SWEET15 Os02g0513100 LOC_Os02g30910 OJ1789_D08.23 OsJ_06889 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.; FUNCTION: Confers blight susceptibility (PubMed:25988582). Confers TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae (PubMed:23879865). {ECO:0000269|PubMed:23879865, ECO:0000303|PubMed:25988582}. ENOG411E008 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nod26-like intrinsic protein Aquaporin NIP3-2 (NOD26-like intrinsic protein 3-2) (OsNIP3;2),Aquaporin NIP3-3 (NOD26-like intrinsic protein 3-3) (OsNIP3;3),Os08g0152100 protein,Os12g0204100 protein (Fragment) Q7EYH7,Q84S07,A0A0P0XCL7,A0A0P0Y820 NIP32_ORYSJ,NIP33_ORYSJ,A0A0P0XCL7_ORYSJ,A0A0P0Y820_ORYSJ NIP3-2 Os08g0152000 LOC_Os08g05590 OJ1349_D05.108 P0443G08.140,NIP3-3 Os08g0152100 LOC_Os08g05600 OJ1349_D05.110 OsJ_025008,Os08g0152100 OSNPB_080152100,Os12g0204100 OSNPB_120204100 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411DTGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) A0A0N7KPI2 A0A0N7KPI2_ORYSJ Os08g0240566 OSNPB_080240566 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DTGZ MYB60 Q3E6Y6,Q8GYP5 Q3E6Y6_ARATH,Q8GYP5_ARATH Myb domain protein 60,MYB transcription factor (Myb domain protein 60) (Putative myb family transcription factor) (Putative transcription factor) Reduced stomatal width; Resistant to drought-C. Tonelli-2005 22637,32017 Myb domain protein 60,MYB transcription factor (Myb domain protein 60) (Putative myb family transcription factor) (Putative transcription factor) DNA binding [GO:0003677],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to light stimulus [GO:0009416]; response to salicylic acid [GO:0009751]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118] locus:2025565; AT1G08810 Myb-related protein Myb-like DNA-binding domain containing protein, expressed (Os12g0125000 protein) (cDNA clone:006-307-B04, full insert sequence),Myb-like DNA-binding domain containing protein, expressed (Os11g0128500 protein) (cDNA, clone: J065176M15, full insert sequence) Q2QYC1,Q2RB26 Q2QYC1_ORYSJ,Q2RB26_ORYSJ LOC_Os12g03150 Os12g0125000 OsJ_35067 OSNPB_120125000,Os11g0128500 LOC_Os11g03440 Os11g0128500 OsJ_32794 OSNPB_110128500 ENOG411E00C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chitinase Chitinase 8 (EC 3.2.1.14) (Class II chitinase a) (OsChia2a) (Pathogenesis related (PR)-3 chitinase 8),Os10g0543400 protein (Fragment) Q7XCK6,A0A0P0XWU1 CHI8_ORYSJ,A0A0P0XWU1_ORYSJ Cht8 Cht2 Os10g0542900 LOC_Os10g39680 OsJ_32330 OSJNBb0015I11.14,Os10g0543400 OSNPB_100543400 ENOG411E00B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting protein kinase CBL-interacting protein kinase 31 (EC 2.7.11.1) (OsCIPK31) (OsCK1),Non-specific serine/threonine protein kinase (EC 2.7.11.1) (Fragment),Os03g0319400 protein Q6X4A2,A0A0P0VXP0,A0A0P0VWU4 CIPKV_ORYSJ,A0A0P0VXP0_ORYSJ,A0A0P0VWU4_ORYSJ CIPK31 CK1 Os03g0319400 LOC_Os03g20380,Os03g0319400 OSNPB_030319400 FUNCTION: Involved in cold stress tolerance. CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. {ECO:0000269|PubMed:17535819}. ENOG411EKBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E00K MBG8.22 Q9FFT5 Q9FFT5_ARATH Aconitase family protein (Similarity to cytoplasmic aconitate hydratase) ARA:GQT-1114-MONOMER; 8198 Aconitase family protein (Similarity to cytoplasmic aconitate hydratase) locus:2160155; AT5G54950 Aconitate hydratase Aconitate hydratase (Aconitase) (EC 4.2.1.3),Os03g0136900 protein (Fragment) Q10S34,A0A0P0VSS6 Q10S34_ORYSJ,A0A0P0VSS6_ORYSJ Os03g0136900 LOC_Os03g04410 Os03g0136900 OSNPB_030136900,Os03g0136900 OSNPB_030136900 FUNCTION: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. {ECO:0000256|RuleBase:RU361275}. ENOG411E00I Q8LPK7 Q8LPK7_ARATH Paramyosin (Putative myosin heavy chain) 76501 Paramyosin (Putative myosin heavy chain) locus:2024081; AT1G24560 NA Os09g0565400 protein (cDNA clone:J013119M08, full insert sequence),Os09g0565400 protein (Fragment) Q650W4,A0A0P0XRN1 Q650W4_ORYSJ,A0A0P0XRN1_ORYSJ Os09g0565400 Os09g0565400 OSJNBa0042B15.33 OSJNBa0070E11.7 OSNPB_090565400,Os09g0565400 OSNPB_090565400 ENOG411DTGP F4IDS7 F4IDS7_ARATH Zinc ion binding protein FUNCTION: Essential protein required during embryogenesis. Believed to act as a core component of the putative HOPS endosomal tethering complex and of the class C core vacuole/endosome tethering (CORVET) complex. CORVET is required for vacuolar transport of SYP22. HOPS is required for the central vacuole formation. Involved in root development (PubMed:29463724). Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways (By similarity). {ECO:0000250|UniProtKB:Q9P253, ECO:0000269|PubMed:29463724}. 112320 Zinc ion binding protein endosome [GO:0005768]; HOPS complex [GO:0030897]; protein binding, bridging [GO:0030674]; endosome organization [GO:0007032]; intracellular protein transport [GO:0006886]; lysosome organization [GO:0007040]; regulation of SNARE complex assembly [GO:0035542]; vesicle docking involved in exocytosis [GO:0006904] locus:2034735; AT1G12470 Vacuolar protein sorting-associated protein 18 Os08g0178100 protein (Putative vacuolar protein sorting protein 18) (cDNA clone:J033060O03, full insert sequence) Q6ZKF1 Q6ZKF1_ORYSJ Os08g0178100 OJ1120_C08.21 OSNPB_080178100 ENOG411DTGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fumble Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid kinase 1),Os11g0311100 protein (Fragment) Q69TF4,Q0IT45 PANK1_ORYSJ,Q0IT45_ORYSJ Os06g0207000 LOC_Os06g09910 P0529B09.16,Os11g0311100 OSNPB_110311100 FUNCTION: Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration (By similarity). {ECO:0000250}. ENOG411EH04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L39 protein 60S ribosomal protein L39-3 Q5SMI4 RL393_ORYSJ RPL39C Os06g0181566 LOC_Os06g08320 OsJ_20351 OSJNBa0035I03.41 OSJNBb0019L07.23 ENOG411EH01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411DTGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os03g0760200 protein,Cytochrome P450 family protein, expressed (Os03g0760500 protein) (Putative cytochrome P450) (cDNA clone:J023109P12, full insert sequence),Os04g0255600 protein (Fragment) Q0DND2,Q94HA3,A0A0P0W7N0 Q0DND2_ORYSJ,Q94HA3_ORYSJ,A0A0P0W7N0_ORYSJ Os03g0760200 OSNPB_030760200,Os03g0760500 LOC_Os03g55260 Os03g0760500 OsJ_12671 OSJNBb0048A17.4 OSNPB_030760500,Os04g0255600 OSNPB_040255600 ENOG411EH0I Q9SKM0,Q9S9X7,F4I6H7 Q9SKM0_ARATH,Q9S9X7_ARATH,F4I6H7_ARATH Uncharacterized protein At2g15180 (Zinc knuckle (CCHC-type) family protein),AT4g07350 protein (F28D6.10 protein),Uncharacterized protein 54058,38752,66240 Uncharacterized protein At2g15180 (Zinc knuckle (CCHC-type) family protein),AT4g07350 protein (F28D6.10 protein),Uncharacterized protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2041809;,locus:2124397;,locus:1005716734; AT2G15180,AT4G07350,AT1G40129 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EH0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0255200 protein (cDNA, clone: J075155O06, full insert sequence) B7F9B1 B7F9B1_ORYSJ Os11g0255200 OSNPB_110255200 ENOG411DRZ9 Q84K35 Q84K35_ARATH Indigoidine synthase A family protein (Uncharacterized protein At1g50510) ARA:GQT-1740-MONOMER; 34800 Indigoidine synthase A family protein (Uncharacterized protein At1g50510) peroxisome [GO:0005777]; plasma membrane [GO:0005886]; hydrolase activity, acting on glycosyl bonds [GO:0016798] locus:2008081; AT1G50510 Indigoidine synthase A like protein Erwinia chrysanthemi IndA protein homolog-like (Os08g0504400 protein) (cDNA clone:J013116B08, full insert sequence),Os08g0504400 protein Q6ZK87,Q0J4M3 Q6ZK87_ORYSJ,Q0J4M3_ORYSJ Os08g0504400 OJ1134_H03.5-2 OSNPB_080504400,Os08g0504400 Os08g0504400 OSNPB_080504400 ENOG411DTGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os07g0526600 protein (Putative PrMC3) (cDNA clone:002-154-E12, full insert sequence),Os07g0501400 protein (Putative cell death associated protein),Os09g0435700 protein (Fragment) Q6Z4L7,Q6ZIJ0,A0A0P0XM40 Q6Z4L7_ORYSJ,Q6ZIJ0_ORYSJ,A0A0P0XM40_ORYSJ Os07g0526600 OsJ_24515 OSJNBa0077J18.12 OSNPB_070526600,OJ1112_F06.11 Os07g0501400 OSNPB_070501400,Os09g0435700 OSNPB_090435700 ENOG411DTGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14-beta-D-glucanase-like NA NA NA NA NA NA NA ENOG411EIB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: microtubule associated serine threonine kinase NA NA NA NA NA NA NA ENOG411ECWB Q9SSN4,F4IF04,F4IF05 Q9SSN4_ARATH,F4IF04_ARATH,F4IF05_ARATH Similar to part of disease resistance protein (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein (TIR-NBS class) 31796,56698,50622 Similar to part of disease resistance protein (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein (TIR-NBS class) response to wounding [GO:0009611]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2032723;,locus:2032672; AT1G72920,AT1G72890 TIR NA NA NA NA NA NA NA ENOG411DWU8 ; P93295,Q9SUM7 M310_ARATH,Q9SUM7_ARATH Uncharacterized mitochondrial protein AtMg00310 (ORF154),RNA binding / RNA-directed DNA polymerase (Uncharacterized protein AT4g20520) (Uncharacterized protein F9F13.170) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07737) is not demonstrated. 17971,42445 Uncharacterized mitochondrial protein AtMg00310 (ORF154),RNA binding / RNA-directed DNA polymerase (Uncharacterized protein AT4g20520) (Uncharacterized protein F9F13.170) mitochondrion [GO:0005739],RNA-directed DNA polymerase activity [GO:0003964] locus:504954514;,locus:2128605; AT2G07737ATMG00310;,AT4G20520 Retrotransposon protein Os11g0194050 protein,Os11g0203800 protein,Os06g0484800 protein A0A0P0XZN6,A0A0P0Y0G3,A0A0P0WX53 A0A0P0XZN6_ORYSJ,A0A0P0Y0G3_ORYSJ,A0A0P0WX53_ORYSJ Os11g0194050 OSNPB_110194050,Os11g0203800 OSNPB_110203800,Os06g0484800 OSNPB_060484800 ENOG411DWU9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA strictosidine synthase Os07g0543600 protein (Putative strictosidine synthase),Os06g0623700 protein (Putative strictosidine synthase) Q6Z5B5,Q69U01 Q6Z5B5_ORYSJ,Q69U01_ORYSJ Os07g0543600 OJ1582_D10.1 OJ1729_E01.28 OSNPB_070543600,Os06g0623700 TGW6 OsJ_22021 OSJNBa0029G06.8 OSNPB_060623700 ENOG411DWU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 734A5 (EC 1.14.-.-),Os07g0647200 protein Q8LIF2,A0A0P0X9R6 C7345_ORYSJ,A0A0P0X9R6_ORYSJ CYP734A5 Os07g0647200 LOC_Os07g45290 OJ1316_A04.108 OsJ_25362 P0503D09.125,Os07g0647200 OSNPB_070647200 FUNCTION: Cytochrome P450 probably involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis. {ECO:0000250}. ENOG411DWU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3755) Os04g0523100 protein (cDNA clone:J023088J02, full insert sequence),Os04g0523100 protein B7EKR7,A3AVN9 B7EKR7_ORYSJ,A3AVN9_ORYSJ Os04g0523100 OSNPB_040523100,Os04g0523100 OsJ_15505 OSNPB_040523100 ENOG411DWU6 EMB975 Q5XET4 PP142_ARATH Pentatricopeptide repeat-containing protein At2g01860 (Protein EMBRYO DEFECTIVE 975) Embryo defective; Globular-H. Mireau-2007 55650 Pentatricopeptide repeat-containing protein At2g01860 (Protein EMBRYO DEFECTIVE 975) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2059733; AT2G01860 Pentatricopeptide repeat-containing protein Os02g0118000 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6ZGL2 Q6ZGL2_ORYSJ Os02g0118000 Os02g0118000 OJ1217_F02.3 OJ1442_E05.34 OSNPB_020118000 ENOG411DWU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411DWU0 PKP2 Q9FLW9 PKP2_ARATH Plastidial pyruvate kinase 2 (PKp2) (EC 2.7.1.40) (Plastidial pyruvate kinase 1) (PKP1) (Pyruvate kinase III) (Pyruvate kinase isozyme B1, chloroplastic) (PKP-BETA1) (Plastidic pyruvate kinase beta subunit 1) DISRUPTION PHENOTYPE: Reduced plastidial pyruvate kinase activity and altered seed oil content leading to wrinkled seeds, retarded embryo elongation and reduced seed germination. {ECO:0000269|PubMed:17557808, ECO:0000269|PubMed:17892448}. Embryo defective; Cotyledon-C. Benning-2007 FUNCTION: Required for plastidial pyruvate kinase activity. Involved in seed oil accumulation, embryo development and seed storage compounds mobilization upon germination. {ECO:0000269|PubMed:17557808, ECO:0000269|PubMed:17892448, ECO:0000269|PubMed:17965177}. PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5. 2.7.1.40 63522 Plastidial pyruvate kinase 2 (PKp2) (EC 2.7.1.40) (Plastidial pyruvate kinase 1) (PKP1) (Pyruvate kinase III) (Pyruvate kinase isozyme B1, chloroplastic) (PKP-BETA1) (Plastidic pyruvate kinase beta subunit 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; fatty acid biosynthetic process [GO:0006633]; lipid metabolic process [GO:0006629]; response to cadmium ion [GO:0046686]; seed development [GO:0048316]; seed maturation [GO:0010431] DEVELOPMENTAL STAGE: In seeds, accumulates in endosperm and embryo. In torpedo-shaped embryos, restricted to the hypocotyl and in the outer parts of the young cotyledons. In later embryo stages, present in all tissues except root tips. {ECO:0000269|PubMed:17892448}. TISSUE SPECIFICITY: Mostly expressed in seeds, and, to a lower extent, in roots, leaves (veins and trichomes), inflorescences, siliques, pollen (grains and tubes) and flowers (sepals and petals). {ECO:0000269|PubMed:17557808, ECO:0000269|PubMed:17892448}. locus:2176912; AT5G52920 Pyruvate kinase Pyruvate kinase (EC 2.7.1.40) (Fragment) Q0JKP1 Q0JKP1_ORYSJ Os01g0660300 Os01g0660300 OSNPB_010660300 ENOG411DWU1 MXC20.1 Q5XV01,F4KHM5,F4KHM4 Q5XV01_ARATH,F4KHM5_ARATH,F4KHM4_ARATH DNA primase 51332,58072,70665 DNA primase locus:2176877; AT5G52800 coiled-coil domain-containing protein 111 Os07g0467900 protein (cDNA clone:J033076F17, full insert sequence) Q69RL2 Q69RL2_ORYSJ Os07g0467900 OSNPB_070467900 P0003B09.27 ENOG411DWU2 PME53 Q8VYZ3 PME53_ARATH Probable pectinesterase 53 (PE 53) (EC 3.1.1.11) (Pectin methylesterase 53) (AtPME53) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G19730-MONOMER; 3.1.1.11 42541 Probable pectinesterase 53 (PE 53) (EC 3.1.1.11) (Pectin methylesterase 53) (AtPME53) cell wall [GO:0005618]; cytoplasm [GO:0005737]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2183214; AT5G19730 pectinesterase Pectinesterase (EC 3.1.1.11) Q5JKV5,Q8LQ65,Q53WM8 Q5JKV5_ORYSJ,Q8LQ65_ORYSJ,Q53WM8_ORYSJ P0439E07.27-2 Os01g0743200 OSNPB_010743200,P0439E07.27-1 Os01g0743200 OsJ_03413 OSNPB_010743200,Os05g0521600 Os05g0521600 OJ1087_C03.4 OsJ_19250 OSNPB_050521600 ENOG411DWU3 PCMP-E50 Q9ZUT4 PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320 56344 Pentatricopeptide repeat-containing protein At2g37320 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2049736; AT2G37320 Pentatricopeptide repeat-containing protein Expressed protein (Os11g0275400 protein) (Pentatricopeptide, putative, expressed),Os08g0238100 protein Q53Q87,A0A0N7KPI0 Q53Q87_ORYSJ,A0A0N7KPI0_ORYSJ LOC_Os11g17530 Os11g0275400 OsJ_09020 OSNPB_110275400,Os08g0238100 OSNPB_080238100 ENOG411DWUM Q7XA65,A0A1P8AU32 PUS1_ARATH,A0A1P8AU32_ARATH RNA pseudouridine synthase 1 (EC 5.4.99.-) (RNA pseudouridylate synthase 1) (RNA-uridine isomerase 1),Pseudouridine synthase family protein ARA:AT1G56345-MONOMER; 5.4.99.- 35894,17902 RNA pseudouridine synthase 1 (EC 5.4.99.-) (RNA pseudouridylate synthase 1) (RNA-uridine isomerase 1),Pseudouridine synthase family protein mitochondrion [GO:0005739]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119] locus:2824464; AT1G56345 synthase RNA pseudouridine synthase 1 (EC 5.4.99.-) (RNA pseudouridylate synthase 1) (RNA-uridine isomerase 1),Os12g0560500 protein Q2QNM3,A0A0P0YBD5 PUS1_ORYSJ,A0A0P0YBD5_ORYSJ Os12g0560500 LOC_Os12g37380,Os12g0560500 OSNPB_120560500 ENOG411DWUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0700100 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:001-133-C07, full insert sequence) Q5Z851 Q5Z851_ORYSJ Os06g0700100 Os06g0700100 OsJ_22527 OSNPB_060700100 P0468G03.19 ENOG411DWUH CML15,CML16 Q9FZ75,Q9LI84 CML15_ARATH,CML16_ARATH Probable calcium-binding protein CML15 (Calmodulin-like protein 15),Probable calcium-binding protein CML16 (Calmodulin-like protein 16) FUNCTION: Potential calcium sensor. {ECO:0000250}. 17146,17642 Probable calcium-binding protein CML15 (Calmodulin-like protein 15),Probable calcium-binding protein CML16 (Calmodulin-like protein 16) calcium ion binding [GO:0005509] locus:2027488;,locus:2102340; AT1G18530,AT3G25600 calcium-binding protein Probable calcium-binding protein CML14 (Calmodulin-like protein 14) Q6L5F4 CML14_ORYSJ CML14 Os05g0577500 LOC_Os05g50180 OJ1126_B10.8 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411DWUI APRR2 Q6LA43 APRR2_ARATH Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. 59402 Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; phosphorelay signal transduction system [GO:0000160]; transcription, DNA-templated [GO:0006351] locus:2141020; AT4G18020 Two-component response NA NA NA NA NA NA NA ENOG411DWUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glycosyltransferase Os02g0331200 protein (Putative HGA1) (cDNA clone:J023015H06, full insert sequence) (cDNA clone:J033123E06, full insert sequence),Os02g0331200 protein (Putative HGA1) (cDNA clone:001-123-D12, full insert sequence),Glycosyltransferase, putative, expressed (Os10g0492200 protein) (cDNA clone:001-200-C03, full insert sequence) Q6YUL6,Q6YUL5,Q9FWV3 Q6YUL6_ORYSJ,Q6YUL5_ORYSJ,Q9FWV3_ORYSJ OJ1116_E03.25-1 Os02g0331200 OSJNBb0037J12.3-1 OSNPB_020331200,Os02g0331200 OJ1116_E03.25-2 OSJNBb0037J12.3-2 OSNPB_020331200,LOC_Os10g35020 Os10g0492200 OsJ_31998 OSJNBa0051D19.6 OSNPB_100492200 ENOG411DWUK A0A1P8BDQ5,F4JXN6,Q6ID68,F4JXN7 A0A1P8BDQ5_ARATH,F4JXN6_ARATH,Q6ID68_ARATH,F4JXN7_ARATH Expressed protein,At5g66005 (Expressed protein) ARA:AT5G66005-MONOMER; 12842,16319,21169,17935 Expressed protein,At5g66005 (Expressed protein) nucleotide phosphatase activity, acting on free nucleotides [GO:0098519] locus:1006230543; AT5G66005 Pfam:DUF265 Os03g0130750 protein (Fragment) A0A0P0VSN6 A0A0P0VSN6_ORYSJ Os03g0130750 OSNPB_030130750 ENOG411DWUD Q6NMJ9 Q6NMJ9_ARATH At2g23840 (HNH endonuclease) 32723 At2g23840 (HNH endonuclease) endonuclease activity [GO:0004519] locus:2061476; AT2G23840 HNH endonuclease Os07g0170200 protein (Fragment) A0A0P0X3I2 A0A0P0X3I2_ORYSJ Os07g0170200 OSNPB_070170200 ENOG411DWUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os05g0391600 protein (cDNA clone:002-165-C08, full insert sequence) Q60ES7 Q60ES7_ORYSJ Os05g0391600 Os05g0391600 OJ1764_D01.5 OSNPB_050391600 ENOG411DWUF Q9SR93,Q9M028 LMBD1_ARATH,LMBD2_ARATH LIMR family protein At3g08930,LIMR family protein At5g01460 56545,56502 LIMR family protein At3g08930,LIMR family protein At5g01460 integral component of membrane [GO:0016021]; plasmodesma [GO:0009506],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2097618;,locus:2179197; AT3G08930,AT5G01460 LIMR family LIMR family protein Os06g0128200 Q658I5 LMBD1_ORYSJ Os06g0128200 LOC_Os06g03760 OsJ_19972 OSJNBa0038F22.26-1 OSJNBa0038F22.26-2 P0538C01.4-1 P0538C01.4-2 ENOG411DWUG PIGM,PNT1 Q500W7,A0A1P8BHL0,F4K8F7 PIGM_ARATH,A0A1P8BHL0_ARATH,F4K8F7_ARATH GPI mannosyltransferase 1 (EC 2.4.1.-) (GPI mannosyltransferase I) (GPI-MT-I) (Phosphatidylinositol-glycan biosynthesis class M protein) (PIG-M) (Protein PEANUT 1),Mannosyltransferase family protein DISRUPTION PHENOTYPE: Plants display cell walls with decreased crystalline cellulose, increased pectins and irregular and ectopic deposition of pectins, xyloglucans and callose. {ECO:0000269|PubMed:15772281}. Male gametophyte defective; Embryo defective-S. Gillmor-2003 FUNCTION: Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN-acyl-PI during GPI precursor assembly. {ECO:0000269|PubMed:15772281}. PATHWAY: Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis. 2.4.1.- 52946,51153,55249 GPI mannosyltransferase 1 (EC 2.4.1.-) (GPI mannosyltransferase I) (GPI-MT-I) (Phosphatidylinositol-glycan biosynthesis class M protein) (PIG-M) (Protein PEANUT 1),Mannosyltransferase family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; transferase activity, transferring hexosyl groups [GO:0016758]; GPI anchor biosynthetic process [GO:0006506],integral component of membrane [GO:0016021]; transferase activity, transferring hexosyl groups [GO:0016758]; GPI anchor biosynthetic process [GO:0006506],integral component of membrane [GO:0016021]; alpha-1,4-mannosyltransferase activity [GO:0051751]; cell division [GO:0051301]; cellulose biosynthetic process [GO:0030244]; embryo development ending in seed dormancy [GO:0009793]; GPI anchor biosynthetic process [GO:0006506]; plant-type cell wall biogenesis [GO:0009832] TISSUE SPECIFICITY: Expressed in influorescence meristem. Present at low level in roots, hypocotyls, leaves and stems. {ECO:0000269|PubMed:15772281}. locus:504954755; AT5G22130 GPI mannosyltransferase Mannosyltransferase family protein, putative, expressed (Os03g0670200 protein) (cDNA clone:J023020O11, full insert sequence),Os03g0670200 protein Q10FE9,A0A0P0W194 Q10FE9_ORYSJ,A0A0P0W194_ORYSJ LOC_Os03g46750 Os03g0670200 OSNPB_030670200,Os03g0670200 OSNPB_030670200 ENOG411DWUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Malate dehydrogenase Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (PP37) Q7XDC8 MDHC_ORYSJ Os10g0478200 LOC_Os10g33800 OSJNBa0055P24.3 ENOG411DWUB KPNB1 Q9FJD4 IMB1_ARATH Importin subunit beta-1 (Karyopherin subunit beta-1) (ATKPNB1) DISRUPTION PHENOTYPE: Delayed development and flowering, reduced length of leaves, stems and siliques, increased sensitivity to abscisic acid (ABA) and increased drought tolerance. {ECO:0000269|PubMed:23582042}. FUNCTION: Acts as negative effector of drought tolerance. Involved in the regulation of stomatal closure and in the abscisic acid (ABA)-mediated pathway that lead to drought tolerance. Does not directly mediate nuclear import of ABI1 and ABI2 which are key regulators of the ABA signaling pathway. May be involved in nuclear translocation of other type 2C protein phosphatases that mediate ABA signaling. {ECO:0000269|PubMed:23582042}. R-ATH-6798695; 96259 Importin subunit beta-1 (Karyopherin subunit beta-1) (ATKPNB1) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nucleus [GO:0005634]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; NLS-bearing protein import into nucleus [GO:0006607]; protein import into nucleus [GO:0006606]; protein import into nucleus, translocation [GO:0000060]; ribosomal protein import into nucleus [GO:0006610] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, stems, petals, stamen, stigma, siliques, embryos and guard cells. {ECO:0000269|PubMed:23582042}. locus:2168586; AT5G53480 importin Os12g0568800 protein (Fragment) A0A0P0YBG5,A0A0P0YBI9 A0A0P0YBG5_ORYSJ,A0A0P0YBI9_ORYSJ Os12g0568800 OSNPB_120568800 ENOG411DWUC BRXL4 Q8GZ92 BRXL4_ARATH Protein Brevis radix-like 4 (AtBRXL4) 42883 Protein Brevis radix-like 4 (AtBRXL4) nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:16514016}. locus:2149897; AT5G20540 protein BREVIS RADIX-like NA NA NA NA NA NA NA ENOG411DWUX SAC3C Q67XV2 SAC3C_ARATH SAC3 family protein C DISRUPTION PHENOTYPE: No visible phenotype. Sac3a, sac3b and sac3c triple mutants show no visible phenotype. {ECO:0000269|PubMed:19843313}. FUNCTION: Possible component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery. {ECO:0000305|PubMed:19843313}. 46973 SAC3 family protein C locus:2096189; AT3G54380 SAC3 GANP family protein Os03g0352200 protein A0A0P0VYA7 A0A0P0VYA7_ORYSJ Os03g0352200 OSNPB_030352200 ENOG411DWUY WRKY12 Q93WY4 WRK12_ARATH Probable WRKY transcription factor 12 (WRKY DNA-binding protein 12) Increased above-ground biomass-R. Dixon-2010 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 24548 Probable WRKY transcription factor 12 (WRKY DNA-binding protein 12) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:505006317; AT2G44745 Transcription factor Os02g0652100 protein A0A0P0VMD3 A0A0P0VMD3_ORYSJ Os02g0652100 OSNPB_020652100 ENOG411DWUZ LRR-RLK Q9FRI1 Q9FRI1_ARATH At1g25320/F4F7_17 (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein F4F7.29) 76431 At1g25320/F4F7_17 (Leucine-rich repeat protein kinase family protein) (Leucine-rich repeat receptor-like protein kinase) (Uncharacterized protein F4F7.29) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2033000; AT1G25320 Leucine-rich repeat receptor-like protein kinase CLV1 receptor kinase-like protein (Os01g0514700 protein) Q8LRD7 Q8LRD7_ORYSJ Os01g0514700 Os01g0514700 B1075D06.7 OSNPB_010514700 ENOG411DWUT ORG4 Q8VY85 Q8VY85_ARATH OBP3-responsive protein 4 (ORG4) (Uncharacterized protein At2g06010) 21541 OBP3-responsive protein 4 (ORG4) (Uncharacterized protein At2g06010) plastid [GO:0009536]; response to salicylic acid [GO:0009751] locus:2051582; AT2G06010 OBP3-responsive gene 4 Os04g0446200 protein A0A0P0WAL8 A0A0P0WAL8_ORYSJ Os04g0446200 OSNPB_040446200 ENOG411DWUU SRF7,SRF6 Q9LUL4,Q9C8M9,F4JFU5,A8MQH3,F4JFU7 SRF7_ARATH,SRF6_ARATH,F4JFU5_ARATH,A8MQH3_ARATH,F4JFU7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 7 (Leucine-rich repeat receptor kinase-like protein SRF7),Protein STRUBBELIG-RECEPTOR FAMILY 6 (Leucine-rich repeat receptor kinase-like protein SRF6),STRUBBELIG-receptor family 7,STRUBBELIG-receptor family 6 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17397538}. MISCELLANEOUS: Cannot functionally replace STRUBBELIG.; MISCELLANEOUS: Over-expression of SRF7 led to male-sterility in cv. Columbia but not in cv. Landsberg.,MISCELLANEOUS: Cannot functionally replace STRUBBELIG.; MISCELLANEOUS: Over-expression of SRF6 induces no obvious phenotypes. R-ATH-446652; 77635,78085,74386,78172,73704 Protein STRUBBELIG-RECEPTOR FAMILY 7 (Leucine-rich repeat receptor kinase-like protein SRF7),Protein STRUBBELIG-RECEPTOR FAMILY 6 (Leucine-rich repeat receptor kinase-like protein SRF6),STRUBBELIG-receptor family 7,STRUBBELIG-receptor family 6 cytosol [GO:0005829]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17397538}. locus:2091015;,locus:2024837; AT3G14350,AT1G53730 strubbelig-receptor family Leucine-rich repeat transmembrane protein kinase 1, putative, expressed (Os03g0183800 protein) (Putative leucine-rich repeat transmembrane protein kinase 1) (cDNA clone:J023108F23, full insert sequence),Os07g0618400 protein,Leucine-rich repeat transmembrane protein kinase, putative, expressed (Os10g0389800 protein) (Putative leucine-rich repeat transmembrane protein kinase),Os03g0183800 protein (Fragment) Q10QT7,Q0D4M3,Q84VG3,A0A0P0VU36 Q10QT7_ORYSJ,Q0D4M3_ORYSJ,Q84VG3_ORYSJ,A0A0P0VU36_ORYSJ Os03g0183800 LOC_Os03g08550 Os03g0183800 OsJ_09681 OSJNBa0032G08.7 OSNPB_030183800,Os07g0618400 Os07g0618400 OSNPB_070618400,Os10g0389800 LOC_Os10g25090 Os10g0389800 OsJ_31383 OSNPB_100389800,Os03g0183800 OSNPB_030183800 ENOG411DWUV O22714 PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 55905 Pentatricopeptide repeat-containing protein At1g60770 intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2036586; AT1G60770 Pentatricopeptide repeat-containing protein OSJNBa0041M06.2 protein (OSJNBb0026L04.10 protein) (Os04g0320200 protein) (cDNA clone:001-123-H03, full insert sequence) Q7XTG6 Q7XTG6_ORYSJ OSJNBa0041M06.2 Os04g0320200 OsJ_14297 OSJNBb0026L04.10 OSNPB_040320200 ENOG411DWUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family Os02g0271600 protein,Os04g0127300 protein (Fragment),Os02g0271000 protein (Putative subtilisin-like serine proteinase) (cDNA clone:J013118B21, full insert sequence),Os04g0127200 protein (Fragment),Os02g0270200 protein,Os02g0270900 protein,Os04g0127600 protein (Fragment),Os02g0270800 protein,Os02g0269600 protein Q0E251,Q0JF91,Q6EPJ5,Q0JF92,Q0E256,A0A0P0VHD8,A0A0P0W683,A0A0P0W697,A0A0P0VHE8,A0A0P0VHD1 Q0E251_ORYSJ,Q0JF91_ORYSJ,Q6EPJ5_ORYSJ,Q0JF92_ORYSJ,Q0E256_ORYSJ,A0A0P0VHD8_ORYSJ,A0A0P0W683_ORYSJ,A0A0P0W697_ORYSJ,A0A0P0VHE8_ORYSJ,A0A0P0VHD1_ORYSJ Os02g0271600 Os02g0271600 OsJ_06200 OSNPB_020271600,Os04g0127300 Os04g0127300 OSNPB_040127300,Os02g0271000 OsJ_06201 OSJNBa0033K18.27 OSNPB_020271000,Os04g0127200 Os04g0127200 OSNPB_040127200,Os02g0270200 Os02g0270200 OSNPB_020270200,Os02g0270900 OSNPB_020270900,Os04g0127600 OSNPB_040127600,Os04g0127200 OSNPB_040127200,Os02g0270800 OSNPB_020270800,Os02g0269600 OSNPB_020269600 ENOG411DWUP MQO24.2 Q84WI4 Q84WI4_ARATH At5g43670 (Sec23/Sec24 protein transport family protein) R-ATH-204005;R-ATH-5694530;R-ATH-983170; 88778 At5g43670 (Sec23/Sec24 protein transport family protein) COPII vesicle coat [GO:0030127]; zinc ion binding [GO:0008270]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886] locus:2171914; AT5G43670 transport) protein Os03g0742800 protein (Sec23/Sec24 trunk domain containing protein, expressed) (cDNA clone:J013170A05, full insert sequence) (cDNA clone:J033107G01, full insert sequence) Q75KX1 Q75KX1_ORYSJ OJ1365_D05.6 LOC_Os03g53140 Os03g0742800 OSNPB_030742800 ENOG411DWUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0293300 protein (Putative disease resistance gene homolog 9N),Os03g0379801 protein Q84YX3,A0A0P0VY00 Q84YX3_ORYSJ,A0A0P0VY00_ORYSJ Os08g0293300 OJ1705_A03.15 OSJNBb0075O18.128 OSNPB_080293300,Os03g0379801 OSNPB_030379801 ENOG411DWUR Q8RXY1,F4JVU0 Q8RXY1_ARATH,F4JVU0_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000256|RuleBase:RU363103}. 20935,16705 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 mitochondrial inner membrane [GO:0005743]; NADH dehydrogenase complex [GO:0030964]; respiratory chain [GO:0070469]; electron carrier activity [GO:0009055]; NADH dehydrogenase (ubiquinone) activity [GO:0008137],mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; electron carrier activity [GO:0009055]; NADH dehydrogenase (ubiquinone) activity [GO:0008137] locus:1005716486; AT4G26965 NADH ubiquinone oxidoreductase family protein NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (Fragment) A0A0P0XQ33,A0A0P0WPS3 A0A0P0XQ33_ORYSJ,A0A0P0WPS3_ORYSJ Os09g0500200 OSNPB_090500200,Os05g0538900 OSNPB_050538900 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000256|RuleBase:RU363103}. ENOG411DWUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DTG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc Os07g0194500 protein (cDNA clone:J033098K22, full insert sequence) Q0D7Z6 Q0D7Z6_ORYSJ Os07g0194500 Os07g0194500 OSNPB_070194500 ENOG411DXBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411DXBD Q0WNN6 Q0WNN6_ARATH Carbohydrate esterase, putative (DUF303) (Uncharacterized protein At3g53010) 32961 Carbohydrate esterase, putative (DUF303) (Uncharacterized protein At3g53010) integral component of membrane [GO:0016021] locus:2085241; AT3G53010 Carbohydrate esterase NA NA NA NA NA NA NA ENOG411EHVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0634600 protein) (cDNA clone:J023053N08, full insert sequence) Q2QLP0 Q2QLP0_ORYSJ LOC_Os12g43810 Os12g0634600 OsJ_36985 OSNPB_120634600 ENOG411EHVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0049I21.1 protein (Os04g0142400 protein) (cDNA clone:J033116L09, full insert sequence),Os04g0149400 protein (Fragment) Q7XRV9,A0A0P0W6J4 Q7XRV9_ORYSJ,A0A0P0W6J4_ORYSJ Os04g0142400 Os04g0142400 OsJ_13677 OSJNBb0049I21.1 OSNPB_040142400,Os04g0149400 OSNPB_040149400 ENOG411EHVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0256100 protein Q2QUR0 Q2QUR0_ORYSJ Os12g0256100 LOC_Os12g15410 OSNPB_120256100 ENOG411EH18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANX Os09g0368850 protein A0A0N7KQP0 A0A0N7KQP0_ORYSJ Os09g0368850 OSNPB_090368850 ENOG411EHVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0111800 protein Q9ASI8 Q9ASI8_ORYSJ Os01g0111800 Os01g0111800 OsJ_00096 OSJNBb0032H19.2 OSNPB_010111800 P0439B06.28 ENOG411E289 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os02g0747600 protein (Fragment) A0A0P0VPP6 A0A0P0VPP6_ORYSJ Os02g0747600 OSNPB_020747600 ENOG411E285 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Possible lysine decarboxylase Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7 (EC 3.2.2.n1) (Protein LONELY GUY-like 7) Q5TKP8 LOGL7_ORYSJ LOGL7 Os05g0541200 LOC_Os05g46360 OJ1362_G11.10 OsJ_19391 FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}. ENOG411E284 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 B3 domain-containing protein Os03g0184500 Q10QS9 Y3845_ORYSJ Os03g0184500 LOC_Os03g08620 OsJ_09687 OSJNBa0032G08.2 ENOG411E286 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar cation proton exchanger Putative vacuolar cation/proton exchanger 4 (Ca(2+)/H(+) exchanger 4) (OsCAX4) Q6YXZ1 CAX4_ORYSJ Os02g0138900 LOC_Os02g04630 OSJNBa0026E05.30 FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase (By similarity). {ECO:0000250}. ENOG411E280 BHLH121,bHLH121 Q9LT23,A0A1I9LN90 BH121_ARATH,A0A1I9LN90_ARATH Transcription factor bHLH121 (Basic helix-loop-helix protein 121) (AtbHLH121) (bHLH 121) (Transcription factor EN 138) (bHLH transcription factor bHLH121),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 37920,35404 Transcription factor bHLH121 (Basic helix-loop-helix protein 121) (AtbHLH121) (bHLH 121) (Transcription factor EN 138) (bHLH transcription factor bHLH121),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2092216; AT3G19860 Transcription factor BHLH transcription factor (Basic helix-loop-helix-like protein) (Os02g0433600 protein) (cDNA clone:001-017-H10, full insert sequence) (cDNA clone:J023031O20, full insert sequence) Q67U21 Q67U21_ORYSJ Os02g0433600 Os02g0433600 OsJ_06533 OSJNBa0065F08.2 OSNPB_020433600 ENOG411E282 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein OSJNBa0064H22.13 protein (Os04g0448700 protein) Q7XV23 Q7XV23_ORYSJ Os04g0448700 OsJ_14971 OSJNBa0064H22.13 OSNPB_040448700 ENOG411EMND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease OTU-like cysteine protease family protein, expressed (Os03g0266000 protein) (cDNA clone:001-109-H02, full insert sequence) (cDNA clone:J013160P06, full insert sequence) Q10NL4 Q10NL4_ORYSJ LOC_Os03g15930 Os03g0266000 OsJ_10252 OSNPB_030266000 ENOG411E28Y MHJ24.14 Q94C20 Q94C20_ARATH AT5g64160/MHJ24_14 (Plant/protein) 24954 AT5g64160/MHJ24_14 (Plant/protein) locus:2164406; AT5G64160 NA Os02g0753200 protein Q6ZGP6 Q6ZGP6_ORYSJ Os02g0753200 Os02g0753200 OJ1288_G09.18 OsJ_08414 OSNPB_020753200 ENOG411E28X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os01g0240700 protein,Os03g0683600 protein,Os01g0239800 protein,Os01g0240600 protein B9EUL8,A3ALH0,A0A0P0V0J6,A0A0P0V088 B9EUL8_ORYSJ,A3ALH0_ORYSJ,A0A0P0V0J6_ORYSJ,A0A0P0V088_ORYSJ Os01g0240700 OsJ_01058 OSNPB_010240700,Os03g0683600 OsJ_12132 OSNPB_030683600,Os01g0239800 OSNPB_010239800,Os01g0240600 OSNPB_010240600 ENOG411E28Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Voltage gated chloride channel NA NA NA NA NA NA NA ENOG411E28U RKD5 O81791,A0A1P8B478 RKD5_ARATH,A0A1P8B478_ARATH Protein RKD5 (AtRKD5) (RWP-RK domain-containing protein 5),RWP-RK domain-containing protein FUNCTION: Putative transcription factor. {ECO:0000250}. 43358,37517 Protein RKD5 (AtRKD5) (RWP-RK domain-containing protein 5),RWP-RK domain-containing protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2127908; AT4G35590 RWP-RK domain-containing protein Os04g0564000 protein A0A0P0WDI4 A0A0P0WDI4_ORYSJ Os04g0564000 OSNPB_040564000 ENOG411E28T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E28W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os09g0461500 protein (Putative PrMC3) (cDNA clone:001-115-A02, full insert sequence) (cDNA clone:J033090L22, full insert sequence) Q67J02 Q67J02_ORYSJ Os09g0461500 Os09g0461500 OsJ_29649 OSJNBa0054F02.35 OSNPB_090461500 ENOG411E28V SKS1,SKS2 Q8VXX5,Q9FHN6 SKS1_ARATH,SKS2_ARATH Monocopper oxidase-like protein SKS1,Monocopper oxidase-like protein SKS2 ARA:GQT-2674-MONOMER;,ARA:GQT-2300-MONOMER; 65877,66407 Monocopper oxidase-like protein SKS1,Monocopper oxidase-like protein SKS2 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722] locus:2122689;,locus:2153107; AT4G25240,AT5G51480 monocopper oxidase-like protein NA NA NA NA NA NA NA ENOG411E28Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain Putative B3 domain-containing protein Os04g0676650,B3 domain-containing protein Os04g0676600 (Protein IDEF1 homolog) Q7XKC4,Q7XKC5 Y4765_ORYSJ,IDEFH_ORYSJ Os04g0676650 Os04g0676500 LOC_Os04g58010 OSJNBa0064G10.7,Os04g0676600 LOC_Os04g58000 OsJ_16616 OSJNBa0064G10.6 FUNCTION: Probable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. ENOG411E28P CBL8 Q9FUQ7,A0A1P8AUP2 CNBL8_ARATH,A0A1P8AUP2_ARATH Calcineurin B-like protein 8 FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. 24649,22770 Calcineurin B-like protein 8 cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; calcium-mediated signaling [GO:0019722],calcium ion binding [GO:0005509] locus:2019439; AT1G64480 calcineurin b-like protein NA NA NA NA NA NA NA ENOG411E28S SPL6 Q94JW8 SPL6_ARATH Squamosa promoter-binding-like protein 6 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. 45953 Squamosa promoter-binding-like protein 6 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. locus:2026428; AT1G69170 Squamosa promoter-binding-like protein NA NA NA NA NA NA NA ENOG411E28R Q9LFD3 Q9LFD3_ARATH Enolase, putative (DUF3527) (Uncharacterized protein At5g01030) (Uncharacterized protein F7J8_10) 82292 Enolase, putative (DUF3527) (Uncharacterized protein At5g01030) (Uncharacterized protein F7J8_10) locus:2150029; AT5G01030 Domain of unknown function (DUF3527) NA NA NA NA NA NA NA ENOG411E28M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 9 NA NA NA NA NA NA NA ENOG411E28N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clp amino terminal domain NA NA NA NA NA NA NA ENOG411E28I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CPDc Os03g0755600 protein,Os03g0755800 protein (Fragment) C7IZH2,A0A0P0W3F9 C7IZH2_ORYSJ,A0A0P0W3F9_ORYSJ Os03g0755600 OSNPB_030755600,Os03g0755800 OSNPB_030755800 ENOG411E28H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KIP1-like protein Kinase interacting protein 1-like (Os01g0167900 protein) (cDNA clone:001-021-E04, full insert sequence) (p0028E10.14 protein) Q9AS78 Q9AS78_ORYSJ P0028E10.14 Os01g0167900 OJ1276_B06.12 OsJ_00520 OSNPB_010167900 P0701D05.40 ENOG411E28K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like NA NA NA NA NA NA NA ENOG411E28J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os04g0194500 protein Q0JEW2 Q0JEW2_ORYSJ Os04g0194500 Os04g0194500 OSNPB_040194500 ENOG411E28D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldehyde dehydrogenase family NA NA NA NA NA NA NA ENOG411E28G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transketolase thiamine diphosphate binding domain NA NA NA NA NA NA NA ENOG411E28C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E28B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor bHLH96-like NA NA NA NA NA NA NA ENOG411DVAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family Acetyltransferase, GNAT family protein, expressed (Os03g0205800 protein) Q10Q85 Q10Q85_ORYSJ Os03g0205800 LOC_Os03g10810 OSNPB_030205800 ENOG411E2R9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ripening-related protein NA NA NA NA NA NA NA ENOG411E2RA MYB21 Q9LK95,A0A1I9LPZ0 MYB21_ARATH,A0A1I9LPZ0_ARATH Transcription factor MYB21 (Myb homolog 3) (AtMyb3) (Myb-related protein 21) (AtMYB21),Myb domain protein 21 DISRUPTION PHENOTYPE: Short anther filaments, delayed anther dehiscence and greatly reduced male fertility. Myb21 and myb24 double mutant is more severely sterile than myb21 mutant and has petals that just grew out of the sepals but ended at a lower level than the stigma. Myb21 and myb57 double mutant has an intermediate sterility phenotype and petals that grew to a final height parallel to the pistil. Myb21, myb24 and myb57 triple mutant has a strongly reduced fertility and an arrested growth of the petals that never grew out of the sepals. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19325888}. Shorter anther filaments delayed anther dehiscence and greatly reduced male fertility. Severely reduced fertility-J. Browse-2006 FUNCTION: Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. 25351,20355 Transcription factor MYB21 (Myb homolog 3) (AtMyb3) (Myb-related protein 21) (AtMYB21),Myb domain protein 21 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; gibberellic acid mediated signaling pathway [GO:0009740]; jasmonic acid mediated signaling pathway [GO:0009867]; red, far-red light phototransduction [GO:0009585]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; stamen development [GO:0048443]; stamen filament development [GO:0080086]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Mainly expressed in floral tissues. expressed in all four whorls of the flower, in the anther vascular tissue and in cells at the junction between anther and stamen filaments. Detected in the nectaries and ovules. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19325888, ECO:0000269|Ref.1}. locus:2089159; AT3G27810 transcription factor NA NA NA NA NA NA NA ENOG411E2RH LBD1,LBD11 Q9LQR0,Q9SK08 LBD1_ARATH,LBD11_ARATH LOB domain-containing protein 1 (ASYMMETRIC LEAVES 2-like protein 8) (AS2-like protein 8),LOB domain-containing protein 11 (ASYMMETRIC LEAVES 2-like protein 7) (AS2-like protein 7) 21410,25535 LOB domain-containing protein 1 (ASYMMETRIC LEAVES 2-like protein 8) (AS2-like protein 8),LOB domain-containing protein 11 (ASYMMETRIC LEAVES 2-like protein 7) (AS2-like protein 7) mitochondrion [GO:0005739] TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.,TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. locus:2026611;,locus:2056578; AT1G07900,AT2G28500 lob domain-containing protein LOB domain protein 1, putative, expressed (Os03g0287400 protein) (cDNA clone:J023131K07, full insert sequence) Q10N09 Q10N09_ORYSJ Os03g0287400 LOC_Os03g17810 Os03g0287400 OsJ_10424 OSNPB_030287400 ENOG411E2RN HSFC1 Q9LV52 HSFC1_ARATH Heat stress transcription factor C-1 (AtHsfC1) (AtHsf-08) FUNCTION: Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 37714 Heat stress transcription factor C-1 (AtHsfC1) (AtHsf-08) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2091762; AT3G24520 Transcription factor NA NA NA NA NA NA NA ENOG411E2RW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Succinate dehydrogenase subunit 4, mitochondrial,Os01g0935900 protein (Fragment) Q942X4,A0A0P0VCM0 SDH4_ORYSJ,A0A0P0VCM0_ORYSJ SDH4 Os01g0935900 LOC_Os01g70980 P0492G09.31,Os01g0935900 OSNPB_010935900 FUNCTION: Membrane-anchoring subunit of succinate dehydrogenase (SDH). {ECO:0000250|UniProtKB:P69054}. ENOG411EHV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2RY Q84TF6 Q84TF6_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (At1g09740) (Putative ER6 protein) 18150 Adenine nucleotide alpha hydrolases-like superfamily protein (At1g09740) (Putative ER6 protein) hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2024291; AT1G09740 Universal stress protein family Os02g0760500 protein (Putative ethylene-responsive protein) (cDNA clone:001-109-D03, full insert sequence),Os10g0318900 protein (Fragment),Os02g0599800 protein Q6K8D2,Q0IYG4,A0A0P0VLG5 Q6K8D2_ORYSJ,Q0IYG4_ORYSJ,A0A0P0VLG5_ORYSJ Os02g0760500 Os02g0760500 OJ1175_B01.17 OsJ_08468 OSNPB_020760500,Os10g0318900 OSNPB_100318900,Os02g0599800 OSNPB_020599800 ENOG411DYVN Q94K50,A0A1P8AWU2,A0A1P8AX05,A0A1P8AWW9 Q94K50_ARATH,A0A1P8AWU2_ARATH,A0A1P8AX05_ARATH,A0A1P8AWW9_ARATH Transmembrane Fragile-X-F-associated protein (Uncharacterized protein At1g68820),Transmembrane Fragile-X-F-associated protein 53637,49266,54333,49961 Transmembrane Fragile-X-F-associated protein (Uncharacterized protein At1g68820),Transmembrane Fragile-X-F-associated protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966],integral component of membrane [GO:0016021] locus:2012453; AT1G68820 Transmembrane Fragile-X-F protein NA NA NA NA NA NA NA ENOG411DUW7 WRKY74,WRKY39 Q93WU6,Q9SR07,B9DG02 WRK74_ARATH,WRK39_ARATH,B9DG02_ARATH Probable WRKY transcription factor 74 (WRKY DNA-binding protein 74),Probable WRKY transcription factor 39 (WRKY DNA-binding protein 39),AT3G04670 protein (WRKY DNA-binding protein 39) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 36495,36719,32329 Probable WRKY transcription factor 74 (WRKY DNA-binding protein 74),Probable WRKY transcription factor 39 (WRKY DNA-binding protein 39),AT3G04670 protein (WRKY DNA-binding protein 39) nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2148815;,locus:2084943; AT5G28650,AT3G04670 Transcription factor Os03g0741400 protein (Putative somatic embryogenesis related protein) (WRKY DNA binding domain containing protein, expressed) (WRKY transcription factor) (cDNA clone:J033100L17, full insert sequence) Q75KW2 Q75KW2_ORYSJ OJ1365_D05.15 LOC_Os03g53050 Os03g0741400 OSNPB_030741400 ENOG411E2K0 ECP63 Q9LF88,Q9SKP0,A0A1P8B189 Y3304_ARATH,ECP63_ARATH,A0A1P8B189_ARATH Late embryogenesis abundant protein At3g53040 (LEA domain-containing protein At3g53040),Late embryogenesis abundant protein ECP63 (Embryonic cell protein 63) (AtECP63) (LEA domain-containing protein ECP63),Embryonic cell protein 63 FUNCTION: May function in the proximal abscission zone cells to prevent water loss after floral organ shedding (Probable). May be involved in the reestablishment of desiccation tolerance in germinated seeds (Probable). {ECO:0000305|PubMed:22992509, ECO:0000305|PubMed:25809152}.,FUNCTION: May be involved in the BHLH109-mediated regulation of somatic embryogenesis. {ECO:0000269|PubMed:26973252}. 52084,48493,38861 Late embryogenesis abundant protein At3g53040 (LEA domain-containing protein At3g53040),Late embryogenesis abundant protein ECP63 (Embryonic cell protein 63) (AtECP63) (LEA domain-containing protein ECP63),Embryonic cell protein 63 cytosol [GO:0005829]; floral organ abscission [GO:0010227],cytosol [GO:0005829] DEVELOPMENTAL STAGE: Expressed during somatic embryogenesis. {ECO:0000269|PubMed:26973252}. TISSUE SPECIFICITY: Highly expressed in the epidermal abscission zone cells from flowers and siliques. Expressed in roots, vasculature of cotyledons and leaves, stigmas, anther filaments and pollen grains. {ECO:0000269|PubMed:22992509}.,TISSUE SPECIFICITY: Expressed in mature seeds. {ECO:0000269|PubMed:9016956}. locus:2085171;,locus:2040615; AT3G53040,AT2G36640 late embryogenesis abundant protein Late embryogenesis abundant protein 17 (OsLEA17) (Late embryogenesis abundant protein 1) (OsLEA3-2) A3AHG5 LEA17_ORYSJ LEA17 LEA1 LEA3-2 Os03g0322900 LOC_Os03g20680 OsJ_010237 FUNCTION: Involved in abiotic stress responses. May function as chaperone and contribute to prevent the formation of damaging protein aggregates. {ECO:0000269|PubMed:23024799}. MISCELLANEOUS: Plants overexpressing LEA17 display enhanced tolerance to salt stress, drought stress and osmotic shock. {ECO:0000269|PubMed:23024799}. ENOG411DR6D AMSH1,AMSH3 Q8VYB5,Q5PNU3 AMSH1_ARATH,AMSH3_ARATH AMSH-like ubiquitin thioesterase 1 (EC 3.4.19.-) (Deubiquitinating enzyme AMSH1),AMSH-like ubiquitin thioesterase 3 (EC 3.4.19.-) (Deubiquitinating enzyme AMSH3) DISRUPTION PHENOTYPE: Seedling growth arrest phenotype. Impaired central lytic vacuole formation, autophagosomes accumulation, and mis-sorting of vacuolar protein cargo to the intercellular space as well as disturbed endocytosis. {ECO:0000269|PubMed:20543027}. impaired vacuole formation and vacuolar transport; accumulates autophagosomes; defective endocytosis and intracellular transport. Seedling lethal-C. Schwechheimer-2010 FUNCTION: Zinc metalloprotease that cleaves 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. {ECO:0000250}.,FUNCTION: Zinc metalloprotease that cleaves 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains, but is not implicated in protein degradation by the 26S proteasome, deneddylation, or desumoylation. Required for intracellular trafficking (e.g. trafficking from the Golgi to the vacuole and the vacuolar trafficking of endocytosed cargo), endocytosis and vacuole biogenesis. {ECO:0000269|PubMed:20543027}. R-ATH-5689901; 3.4.19.- 57383,57268 AMSH-like ubiquitin thioesterase 1 (EC 3.4.19.-) (Deubiquitinating enzyme AMSH1),AMSH-like ubiquitin thioesterase 3 (EC 3.4.19.-) (Deubiquitinating enzyme AMSH3) cytoplasm [GO:0005737]; membrane [GO:0016020]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; protein K48-linked deubiquitination [GO:0071108]; protein K63-linked deubiquitination [GO:0070536],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; vacuolar membrane [GO:0005774]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; endocytosis [GO:0006897]; intracellular transport [GO:0046907]; positive regulation of intracellular protein transport [GO:0090316]; positive regulation of vacuole organization [GO:0044090]; protein K48-linked deubiquitination [GO:0071108]; protein K63-linked deubiquitination [GO:0070536]; protein transport [GO:0015031]; vacuole organization [GO:0007033] locus:2008184;,locus:504955440; AT1G48790,AT4G16144 AMSH-like ubiquitin thiolesterase Os01g0499300 protein (STAM binding protein-like protein) (cDNA clone:J033103P11, full insert sequence),Os01g0338200 protein (STAM binding protein(Associated molecule with the SH3 domain of STAM)-like) (cDNA clone:J013131J21, full insert sequence),Os09g0378100 protein Q5QLJ2,Q942M1,A3BYB2 Q5QLJ2_ORYSJ,Q942M1_ORYSJ,A3BYB2_ORYSJ Os01g0499300 Os01g0499300 B1111E11.40 OSNPB_010499300,Os01g0338200 B1088D01.3 OsJ_01608 OSNPB_010338200,Os09g0378100 OsJ_29172 OSNPB_090378100 ENOG411E0HV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os08g0334900 protein (Putative xyloglucan fucosyltransferase) (cDNA clone:001-022-G05, full insert sequence),Os06g0211700 protein Q6YUI8,A0A0P0WUC7 Q6YUI8_ORYSJ,A0A0P0WUC7_ORYSJ Os08g0334900 Os08g0334900 OsJ_26935 OSJNBb0076O03.28 OSNPB_080334900,Os06g0211700 OSNPB_060211700 ENOG411E0HU TPR4 Q8VZ31 Q8VZ31_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g04530) 34553 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g04530) RNA processing [GO:0006396] locus:2197768; AT1G04530 NA NA NA NA NA NA NA NA ENOG411E0HT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA potassium transporter 5-like NA NA NA NA NA NA NA ENOG411E0HF ANAC087,NAC046 Q9FK44,Q9SQQ6,F4JWK6 Q9FK44_ARATH,Q9SQQ6_ARATH,F4JWK6_ARATH NAC domain containing protein 87 (NAM (No apical meristem)-like protein) (No apical meristem (NAM)-like protein) (Putative NAM (No apical meristem) protein),AT3g04060/T11I18_17 (NAC domain containing protein 46) (NAM-like protein (No apical meristem)),NAC domain containing protein 87 FUNCTION: Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.,FUNCTION: Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. MISCELLANEOUS: Plants overexpressing NAC046 exhibit early-senescence phenotype and reduced chlorophyll content. Plants silencing NAC046 exhibit delayed-senescence phenotype and increased chlorophyll content. {ECO:0000269|PubMed:27021284}. 38271,37781,38202 NAC domain containing protein 87 (NAM (No apical meristem)-like protein) (No apical meristem (NAM)-like protein) (Putative NAM (No apical meristem) protein),AT3g04060/T11I18_17 (NAC domain containing protein 46) (NAM-like protein (No apical meristem)),NAC domain containing protein 87 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; regulatory region DNA binding [GO:0000975]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of chlorophyll catabolic process [GO:1903648]; positive regulation of leaf senescence [GO:1900057]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2172334;,locus:2095958; AT5G18270,AT3G04060 (No apical meristem) protein GRAB2 protein, putative, expressed (NAC transcription factor 39) (Os03g0327100 protein) (Putative NAM (No apical meristem) protein) (cDNA clone:J013046E14, full insert sequence) Q8H7M4 Q8H7M4_ORYSJ OSJNBb0014I10.2 NAC39 LOC_Os03g21030 Os03g0327100 OsJ_10688 OSNPB_030327100 ENOG411E0HE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411E0HD APCB1 Q9M9A8,A0A1P8AS38 APCB1_ARATH,A0A1P8AS38_ARATH Aspartyl protease APCB1 (EC 3.4.23.-) (Aspartyl protease cleaving BAG 1),Eukaryotic aspartyl protease family protein DISRUPTION PHENOTYPE: Enhanced susceptibility to B.cinerea and permissive fungal growth. {ECO:0000269|PubMed:26739014}. FUNCTION: Involved in proteolytic processing of BAG6 and plant basal immunity. {ECO:0000269|PubMed:26739014}. 3.4.23.- 65349,51882 Aspartyl protease APCB1 (EC 3.4.23.-) (Aspartyl protease cleaving BAG 1),Eukaryotic aspartyl protease family protein integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190]; defense response to fungus [GO:0050832]; protein catabolic process [GO:0030163],integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190] locus:2028466; AT1G49050 Eukaryotic aspartyl protease Os02g0730700 protein (Putative nucellin-like aspartic protease) (cDNA clone:J013159L17, full insert sequence) Q6YWQ0 Q6YWQ0_ORYSJ Os02g0730700 OsJ_08261 OSJNBa0072H09.41 OSNPB_020730700 P0617A09.20 ENOG411E0HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Leaf senescence protein-like (Os06g0234900 protein),Leaf senescence protein-like (Os06g0235000 protein),Leaf senescence protein-like (Os06g0235100 protein) Q67V94,Q67V93,Q67V92 Q67V94_ORYSJ,Q67V93_ORYSJ,Q67V92_ORYSJ Os06g0234900 OsJ_20727 OSJNBa0080E19.18 OSJNBb0061B07.33 OSNPB_060234900,Os06g0235000 OsJ_20728 OSJNBa0080E19.19 OSJNBb0061B07.34 OSNPB_060235000,Os06g0235100 OsJ_20729 OSJNBa0080E19.20 OSJNBb0061B07.35 OSNPB_060235100 ENOG411E0H3 F4IDY5,F4HVS0,A0A1P8AWE8 BTSL1_ARATH,BTSL2_ARATH,A0A1P8AWE8_ARATH Zinc finger protein BRUTUS-like At1g18910,Zinc finger protein BRUTUS-like At1g74770,Zinc ion binding protein FUNCTION: Probable E3 ubiquitin-protein ligase that may regulate the response to iron deficiency and thus contributes to iron homeostasis. {ECO:0000250|UniProtKB:Q8LPQ5}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 144092,144923,141441 Zinc finger protein BRUTUS-like At1g18910,Zinc finger protein BRUTUS-like At1g74770,Zinc ion binding protein integral component of membrane [GO:0016021]; nucleus [GO:0005634]; ligase activity [GO:0016874]; zinc ion binding [GO:0008270]; cellular response to iron ion starvation [GO:0010106]; protein ubiquitination [GO:0016567],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; ligase activity [GO:0016874]; zinc ion binding [GO:0008270]; protein ubiquitination [GO:0016567],zinc ion binding [GO:0008270] locus:2011266;,locus:2027176; AT1G18910,AT1G74770 Zinc ion binding NA NA NA NA NA NA NA ENOG411E0H2 RAD51D Q9LQQ2,A3QS64,A0A1P8AT83,A8MSF8 RA51D_ARATH,A3QS64_ARATH,A0A1P8AT83_ARATH,A8MSF8_ARATH DNA repair protein RAD51 homolog 4 (AtRAD51D),DNA repair RAD51-like protein (RAD51D splice variant b),DNA repair RAD51-like protein FUNCTION: Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. {ECO:0000250}. R-ATH-5693616; 35384,25745,23772,33411 DNA repair protein RAD51 homolog 4 (AtRAD51D),DNA repair RAD51-like protein (RAD51D splice variant b),DNA repair RAD51-like protein Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281]; meiotic DNA recombinase assembly [GO:0000707]; mitotic recombination [GO:0006312]; positive regulation of defense response to bacterium [GO:1900426]; reciprocal meiotic recombination [GO:0007131]; response to ionizing radiation [GO:0010212]; somatic cell DNA recombination [GO:0016444]; strand invasion [GO:0042148],ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; DNA repair [GO:0006281] locus:2825233; AT1G07745 DNA repair protein Rad51 Os09g0104200 protein (RAD51D variant 1),Os09g0104200 protein (RAD51D variant 2),Os09g0104200 protein (RAD51D variant 3) A0A075DNI2,A0A075DNI4,A0A075DNI1 A0A075DNI2_ORYSJ,A0A075DNI4_ORYSJ,A0A075DNI1_ORYSJ RAD51D Os09g0104200 OSNPB_090104200 ENOG411E0H0 BIM2 Q9CAA4 BIM2_ARATH Transcription factor BIM2 (BES1-interacting Myc-like protein 2) (Basic helix-loop-helix protein 102) (AtbHLH102) (bHLH 102) (Transcription factor EN 125) (bHLH transcription factor bHLH102) FUNCTION: Positive brassinosteroid-signaling protein. 34487 Transcription factor BIM2 (BES1-interacting Myc-like protein 2) (Basic helix-loop-helix protein 102) (AtbHLH102) (bHLH 102) (Transcription factor EN 125) (bHLH transcription factor bHLH102) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2205455; AT1G69010 Transcription factor NA NA NA NA NA NA NA ENOG411DVA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os04g0407500 protein (Fragment) A0A0N7KJ07 A0A0N7KJ07_ORYSJ Os04g0407500 OSNPB_040407500 ENOG411DUWP ARA1,F18P9_10 O23461,Q9M1M0,A0A1I9LRU1 ARAK_ARATH,Q9M1M0_ARATH,A0A1I9LRU1_ARATH L-arabinokinase (AtISA1) (EC 2.7.1.46),Arabinose kinase-like protein (Mevalonate/galactokinase family protein),Mevalonate/galactokinase family protein Sensitive to arabinose-C. Cobbett-1999 FUNCTION: Arabinose kinase. Involved in the salvage pathway which converts free L-arabinose to UDP-L-arabinose. May play a role in arabinose transport. {ECO:0000269|PubMed:10344205}. MISCELLANEOUS: Sup1, a suppressor of the ara1-1 arabinose-sensitive phenotype, contains a second point mutation resulting in a premature stop codon and a complete loss of kinase activity. Therefore, the putative arabinose transport function is independent from the kinase activity. ARA:AT4G16130-MONOMER;MetaCyc:AT4G16130-MONOMER;,ARA:AT3G42850-MONOMER; 2.7.1.46 114261,105736,106689 L-arabinokinase (AtISA1) (EC 2.7.1.46),Arabinose kinase-like protein (Mevalonate/galactokinase family protein),Mevalonate/galactokinase family protein cytosol [GO:0005829]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; galactose binding [GO:0005534]; L-arabinokinase activity [GO:0009702],ATP binding [GO:0005524]; galactose binding [GO:0005534]; kinase activity [GO:0016301] locus:2130105;,locus:2078516; AT4G16130,AT3G42850 Galactokinase galactose-binding signature GHMP kinase-like protein (Os02g0141300 protein) (cDNA clone:J013097O08, full insert sequence),GHMP kinase-like (Os06g0702500 protein) (cDNA clone:J013108L09, full insert sequence),Os06g0702500 protein,Os03g0239933 protein Q6YX79,Q5Z8W3,A0A0P0X0N1,A0A0N7KGW9 Q6YX79_ORYSJ,Q5Z8W3_ORYSJ,A0A0P0X0N1_ORYSJ,A0A0N7KGW9_ORYSJ Os02g0141300 Os02g0141300 OJ1123_E07.2 OsJ_05332 OSNPB_020141300,P0596H10.38-1 Os06g0702500 OSNPB_060702500,Os06g0702500 OSNPB_060702500,Os03g0239933 OSNPB_030239933 ENOG411DUWR Q84TD5 Q84TD5_ARATH At5g27400 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g27400) R-ATH-8876725; 41176 At5g27400 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g27400) cytosol [GO:0005829]; methyltransferase activity [GO:0008168] locus:2146430; AT5G27400 Putative methyltransferase NA NA NA NA NA NA NA ENOG411DUWW GI Q9SQI2 GIGAN_ARATH Protein GIGANTEA Observed temperature-dependent effects on both period and rhythm robustness as those seen in gi-11.,Although at 17°C the gi mutant and the wild type have no significant period difference (measured by the free-running periods of the leaf movement rhythms) as the temperature increased (22 and 27°C) the period of the mutant becomes significantly shorter than that of the wild type.,Delayed flowering.,In addition to a shortening of the period a temperature-dependent increase in the variance of period was seen for the mutant with the variance increasing from 3.1 at 17°C to 18.0 at 27°C (F test P = 1.8x10-9). Although an increase in the variance of period with temperature was also observed for the wild type this was not of the same magnitude (from 1.9 at 17°C to 3.8 at 27°C; F test P = 4.1x10-3). Late flowering-J. Putterill-1999 FUNCTION: Involved in regulation of circadian rhythm and photoperiodic flowering. May play a role in maintenance of circadian amplitude and period length. Is involved in phytochrome B signaling. Stabilizes ADO3 and the circadian photoreceptor ADO1/ZTL. Regulates 'CONSTANS' (CO) in the long-day flowering pathway by modulating the ADO3-dependent protein stability of CDF1 and CDF2, but is not essential to activate CO transcription. Regulates, via the microRNA miR172, a CO-independent pathway that promotes photoperiodic flowering by inducing 'FLOWERING LOCUS T'. {ECO:0000269|PubMed:10920210, ECO:0000269|PubMed:17890372, ECO:0000269|PubMed:19619493}. 127876 Protein GIGANTEA cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623]; flower development [GO:0009908]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; red, far-red light phototransduction [GO:0009585]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637]; response to cold [GO:0009409]; response to far red light [GO:0010218]; response to hydrogen peroxide [GO:0042542]; response to karrikin [GO:0080167]; temperature compensation of the circadian clock [GO:0010378] DEVELOPMENTAL STAGE: Found at all stages. TISSUE SPECIFICITY: Widely expressed with highest levels in inflorescence apices, young flowers and young siliques. locus:2199685; AT1G22770 gigantea Protein GIGANTEA Q9AWL7 GIGAN_ORYSJ GI Os01g0182600 LOC_Os01g08700 P0666G04.27-1 P0666G04.27-2 FUNCTION: Involved in regulation of circadian rhythm, and in the control of the photoperiodic flowering. Acts as suppressor of flowering under short-day (SD) and long-day (LD) conditions. Activates Hd1/CONSTANS gene. {ECO:0000269|PubMed:12700762}. ENOG411DUWK EBM Q75W54 EBM_ARATH Mannosylglycoprotein endo-beta-mannosidase (AtEBM) (Endo-beta-mannosidase) (EC 3.2.1.152) [Cleaved into: Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit] FUNCTION: Glycosidase that specifically hydrolyzes the Man-beta-1,4-GlcNAc linkage in the trimannosyl core structure of N-glycans. Does not hydrolyzes pyridylamino derivatives sugar chains containing Man-alpha-1,3-Man-beta or Xylose-beta-1,2-Man-beta. ARA:AT1G09010-MONOMER; R-ATH-6798695;R-ATH-8853383; 3.2.1.152; 3.2.1.152 107661 Mannosylglycoprotein endo-beta-mannosidase (AtEBM) (Endo-beta-mannosidase) (EC 3.2.1.152) [Cleaved into: Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit] vacuole [GO:0005773]; mannosylglycoprotein endo-beta-mannosidase activity [GO:0033947]; carbohydrate metabolic process [GO:0005975] locus:2036094; AT1G09010 mannosylglycoprotein endo-beta-mannosidase-like Os05g0391500 protein Q0DIG5 Q0DIG5_ORYSJ Os05g0391500 Os05g0391500 OsJ_18426 OSNPB_050391500 ENOG411EID8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EID9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0545400 protein Q0IZW5 Q0IZW5_ORYSJ Os09g0545400 Os09g0545400 OSNPB_090545400 ENOG411EID6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0440201 protein (Fragment) A0A0P0WMS5 A0A0P0WMS5_ORYSJ Os05g0440201 OSNPB_050440201 ENOG411EID7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EID4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EID5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA function NA NA NA NA NA NA NA ENOG411EIDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411EIDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0562000 protein,Os05g0561800 protein (Fragment) A0A0N7KL87,A0A0P0WQ92 A0A0N7KL87_ORYSJ,A0A0P0WQ92_ORYSJ Os05g0562000 OSNPB_050562000,Os05g0561800 OSNPB_050561800 ENOG411EIDB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0603100 protein A0A0P0Y4I4 A0A0P0Y4I4_ORYSJ Os11g0603100 OSNPB_110603100 ENOG411EIDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Phosphofructokinase NA NA NA NA NA NA NA ENOG411EIDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDY Q3EAK6 Q3EAK6_ARATH Uncharacterized protein 12091 Uncharacterized protein locus:504955611; AT3G53235 NA NA NA NA NA NA NA NA ENOG411EIDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDS Q1G379 Q1G379_ARATH Uncharacterized protein 12591 Uncharacterized protein locus:4515103538; AT5G07572 NA NA NA NA NA NA NA NA ENOG411EIDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EIDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0171900 protein Q942S2 Q942S2_ORYSJ P0583G08.27 Os01g0171900 OSNPB_010171900 ENOG411EIDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3681) Os01g0145800 protein,Os01g0145200 protein,Os01g0145000 protein,Os01g0146200 protein,Os01g0144800 protein (cDNA clone:002-170-A12, full insert sequence),Os01g0146700 protein,Os01g0145400 protein,Os01g0146000 protein,Os01g0145500 protein,Os01g0146500 protein,Os01g0145700 protein Q5ZDM1,B9ESU3,Q5ZBL0,B9ESU9,Q5ZBL2,Q5ZDL1,Q5ZDM6,A0A0P0UYN7,A0A0P0UY64,A0A0P0UY77,A0A0P0UY58 Q5ZDM1_ORYSJ,B9ESU3_ORYSJ,Q5ZBL0_ORYSJ,B9ESU9_ORYSJ,Q5ZBL2_ORYSJ,Q5ZDL1_ORYSJ,Q5ZDM6_ORYSJ,A0A0P0UYN7_ORYSJ,A0A0P0UY64_ORYSJ,A0A0P0UY77_ORYSJ,A0A0P0UY58_ORYSJ P0416D03.10 Os01g0145800 OSNPB_010145800,Os01g0145200 OsJ_00346 OSNPB_010145200,Os01g0145000 OsJ_00345 OSNPB_010145000 P0024G09.41,Os01g0146200 OsJ_00355 OSNPB_010146200,Os01g0144800 OSNPB_010144800 P0024G09.37,P0416D03.33 Os01g0146700 OSNPB_010146700,Os01g0145400 OsJ_00347 OSNPB_010145400 P0416D03.2,Os01g0146000 OSNPB_010146000,Os01g0145500 OSNPB_010145500,Os01g0146500 OSNPB_010146500,Os01g0145700 OSNPB_010145700 ENOG411EDC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like NA NA NA NA NA NA NA ENOG411EDCQ O64873,Q9FIY8,O64872 O64873_ARATH,Q9FIY8_ARATH,O64872_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g44390),Cysteine/Histidine-rich C1 domain family protein,At2g44380 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g44380) 23674,28653,28273 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g44390),Cysteine/Histidine-rich C1 domain family protein,At2g44380 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g44380) cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2050502;,locus:2158347;,locus:2050477; AT2G44390,AT5G43520,AT2G44380 C1 domain NA NA NA NA NA NA NA ENOG411EDCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 AP2/ERF and B3 domain-containing protein Os01g0141000,Putative AP2/ERF and B3 domain-containing protein Os01g0140700,B3 domain-containing protein Os02g0764100 Q9AWS0,Q9AWS7,Q0DXB1 Y1410_ORYSJ,Y1407_ORYSJ,Y2641_ORYSJ Os01g0141000 LOC_Os01g04800 P0480E02.32,Os01g0140700 LOC_Os01g04750 P0480E02.22,Os02g0764100 LOC_Os02g52620 ENOG411EDCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp70 protein Os04g0211700 protein A0A0P0W7F2 A0A0P0W7F2_ORYSJ Os04g0211700 OSNPB_040211700 ENOG411EDCE AGL13 Q38837 AGL13_ARATH Agamous-like MADS-box protein AGL13 FUNCTION: Probable transcription factor. 27968 Agamous-like MADS-box protein AGL13 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant ovule development [GO:0048481]; pollen development [GO:0009555]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of gene expression [GO:0010468]; transcription, DNA-templated [GO:0006351] locus:2098826; AT3G61120 K-box region NA NA NA NA NA NA NA ENOG411EDCB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDCC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDCA O04582,Q9ZQR6,Q9C8T2,Q4PSX9,A0A1P8ANB3,F4HX47,F4I826,F4HX48 SPZ5_ARATH,SPZ2_ARATH,Q9C8T2_ARATH,Q4PSX9_ARATH,A0A1P8ANB3_ARATH,F4HX47_ARATH,F4I826_ARATH,F4HX48_ARATH Probable non-inhibitory serpin-Z5 (ArathZ5),Serpin-Z2 (ArathZ2),Serine protease inhibitor (SERPIN) family protein (Serpin-related) (Uncharacterized protein F9N12.10),Putative serpin/serine protease inhibitor (Serine protease inhibitor (SERPIN) family protein),Serine protease inhibitor (SERPIN) family protein When exposed to MMS mutants grew consistently more vigorously than wild-type. Reduced induction of DNA repair- and cell cycle-related genes. Resistant to MMS (inducer of genotoxic stress)-T. Roberts-2009 FUNCTION: Probable serine protease inhibitor. {ECO:0000250}. 48174,45887,13897,20659,22429,24888,21890,51867 Probable non-inhibitory serpin-Z5 (ArathZ5),Serpin-Z2 (ArathZ2),Serine protease inhibitor (SERPIN) family protein (Serpin-related) (Uncharacterized protein F9N12.10),Putative serpin/serine protease inhibitor (Serine protease inhibitor (SERPIN) family protein),Serine protease inhibitor (SERPIN) family protein extracellular space [GO:0005615]; serine-type endopeptidase inhibitor activity [GO:0004867],extracellular space [GO:0005615]; nucleus [GO:0005634]; serine-type endopeptidase inhibitor activity [GO:0004867]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281],extracellular space [GO:0005615]; peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867],extracellular space [GO:0005615]; peptidase activity [GO:0008233] TISSUE SPECIFICITY: Weakly expressed during seedling development. {ECO:0000269|PubMed:18060440}. locus:2055185;,locus:2038473;,locus:2024563;,locus:2017997;,locus:2008321;,locus:2018002; AT1G62170,AT2G14540,AT1G63280,AT1G64010,AT1G62160,AT1G51330 SERPIN NA NA NA NA NA NA NA ENOG411EDCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein Os08g0126100 protein (Zinc finger (C3HC4-type RING finger) protein family-like),Os04g0266700 protein (Fragment),Os12g0203500 protein,Os08g0126000 protein Q6ZFR3,A0A0P0W7R6,A0A0P0Y7Y6,A0A0P0XB69 Q6ZFR3_ORYSJ,A0A0P0W7R6_ORYSJ,A0A0P0Y7Y6_ORYSJ,A0A0P0XB69_ORYSJ Os08g0126100 OJ1163_G08.13 OJ1499_A07.35 OsJ_25891 OSNPB_080126100,Os04g0266700 OSNPB_040266700,Os12g0203500 OSNPB_120203500,Os08g0126000 OSNPB_080126000 ENOG411EIBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0502300 protein A0A0P0XWA1 A0A0P0XWA1_ORYSJ Os10g0502300 OSNPB_100502300 ENOG411E4HI MUL8.6 Q9FLZ6 Q9FLZ6_ARATH Emb|CAB62594.1 (Plant calmodulin-binding protein-like protein) 56415 Emb|CAB62594.1 (Plant calmodulin-binding protein-like protein) vacuolar membrane [GO:0005774]; calmodulin binding [GO:0005516] locus:2175693; AT5G39380 Plant calmodulin-binding domain Expressed protein (Os03g0211400 protein) (cDNA clone:J023073N11, full insert sequence) Q10Q34 Q10Q34_ORYSJ Os03g0211400 LOC_Os03g11290 Os03g0211400 OSNPB_030211400 ENOG411E4HN MPC1,AtMPC1 Q949R9,B3H6E6 MPC1_ARATH,B3H6E6_ARATH Mitochondrial pyruvate carrier 1 (AtMPC1),Mitochondrial pyruvate carrier FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000269|PubMed:24842572}.,FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000256|RuleBase:RU363100}. 12438,10904 Mitochondrial pyruvate carrier 1 (AtMPC1),Mitochondrial pyruvate carrier integral component of mitochondrial inner membrane [GO:0031305]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; pyruvate transmembrane transporter activity [GO:0050833]; mitochondrial pyruvate transmembrane transport [GO:1902361]; mitochondrial pyruvate transport [GO:0006850],mitochondrial inner membrane [GO:0005743]; mitochondrial pyruvate transport [GO:0006850] locus:2147695; AT5G20090 Brain protein Mitochondrial pyruvate carrier Q6H4I2,Q6Z565 Q6H4I2_ORYSJ,Q6Z565_ORYSJ Os09g0373000 OsJ_29139 OSNPB_090373000 P0599F09.17,Os08g0412500 OSJNBa0007M04.17 OSNPB_080412500 FUNCTION: Mediates the uptake of pyruvate into mitochondria. {ECO:0000256|RuleBase:RU363100}. ENOG411E268 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) OSJNBa0071I13.19 protein (Os04g0657500 protein) (cDNA clone:J013074N08, full insert sequence) Q7FAL5 Q7FAL5_ORYSJ Os04g0657500 Os04g0657500 OsJ_16467 OSJNBa0071I13.19 OSNPB_040657500 ENOG411EEU5 Q9MAD4 Q9MAD4_ARATH At3g01250 (T4P13.6 protein) (Transmembrane protein) 18622 At3g01250 (T4P13.6 protein) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2102167; AT3G01250 NA NA NA NA NA NA NA NA ENOG411EEU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family NA NA NA NA NA NA NA ENOG411EEU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EEU1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411EEU0 NRPB7L Q6NML5 RPB7L_ARATH DNA-directed RNA polymerase subunit 7-like protein 22749 DNA-directed RNA polymerase subunit 7-like protein DNA-directed RNA polymerase complex [GO:0000428]; nucleus [GO:0005634]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; single-stranded DNA binding [GO:0003697]; single-stranded RNA binding [GO:0003727]; transcription, DNA-templated [GO:0006351] locus:2129855; AT4G14520 Inherit from KOG: RNA polymerase II NA NA NA NA NA NA NA ENOG411EEU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Os08g0490100 protein (Putative DNA-binding protein) (cDNA, clone: J065152E11, full insert sequence) Q6ZBQ1 Q6ZBQ1_ORYSJ Os08g0490100 OsJ_27751 OSNPB_080490100 P0605H02.27 ENOG411EEUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HMG (high mobility group) box NA NA NA NA NA NA NA ENOG411EEUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 NA NA NA NA NA NA NA ENOG411EEUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/calcium exchanger protein NA NA NA NA NA NA NA ENOG411EEUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AWPM-19-like family Os02g0731500 protein (cDNA, clone: J065098J18, full insert sequence),Os02g0731500 protein (Fragment) B7F8L3,A0A0P0VPB2 B7F8L3_ORYSJ,A0A0P0VPB2_ORYSJ Os02g0731500 Os02g0731500 OSNPB_020731500,Os02g0731500 OSNPB_020731500 ENOG411EEUN T4L20.330 O65694 O65694_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34750) (Uncharacterized protein T4L20.330) 16434 SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34750) (Uncharacterized protein T4L20.330) response to auxin [GO:0009733] locus:2139569; AT4G34750 auxin-induced protein NA NA NA NA NA NA NA ENOG411EEUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ-DOMAIN 31-like NA NA NA NA NA NA NA ENOG411EEUH APPB1 Q9SB59 Q9SB59_ARATH Bnm1 like protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) 19936 Bnm1 like protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) apoplast [GO:0048046]; vacuole [GO:0005773]; enzyme inhibitor activity [GO:0004857] locus:2121964; AT4G24640 PMEI NA NA NA NA NA NA NA ENOG411EEUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEUU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0103000 protein Q5VRH5 Q5VRH5_ORYSJ OSJNBa0075G19.22 Os06g0103000 OSNPB_060103000 ENOG411EEUT ANR1,AGL44 Q9SI38,A0A1P8AYX0 ANR1_ARATH,A0A1P8AYX0_ARATH MADS-box transcription factor ANR1 (Protein AGAMOUS-LIKE 44) (Protein ARABIDOPSIS NITRATE REGULATED 1),AGAMOUS-like 44 DISRUPTION PHENOTYPE: Impaired lateral root proliferation in nitrate rich root zones. {ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:9430595}. FUNCTION: Probable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner. {ECO:0000269|PubMed:15667327, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}. 26803,26918 MADS-box transcription factor ANR1 (Protein AGAMOUS-LIKE 44) (Protein ARABIDOPSIS NITRATE REGULATED 1),AGAMOUS-like 44 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor binding [GO:0008134]; cellular response to nitrate [GO:0071249]; lateral root development [GO:0048527]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; response to nitrate [GO:0010167]; response to nutrient [GO:0007584]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Specifically expressed in roots, mostly in lateral roots (LR) primordia, young emerging LRs, apex and base of LRs, apex of the primary root, and in the stele. Barely detectable in shoots. {ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}. locus:2042182; AT2G14210 K-box region NA NA NA NA NA NA NA ENOG411EEUW Q9ZQF4,Q8H1M4,F4IJB8 Q9ZQF4_ARATH,Q8H1M4_ARATH,F4IJB8_ARATH Spire, putative (DUF1685) (Uncharacterized protein At2g15590) (Uncharacterized protein At2g15590/F9O13.14),Spire, putative (DUF1685) (Uncharacterized protein At2g15590/F9O13.14),Uncharacterized protein 17783,14353,17829 Spire, putative (DUF1685) (Uncharacterized protein At2g15590) (Uncharacterized protein At2g15590/F9O13.14),Spire, putative (DUF1685) (Uncharacterized protein At2g15590/F9O13.14),Uncharacterized protein locus:2053603;,locus:2053643; AT2G15590,AT2G15610 Protein of unknown function (DUF1685) NA NA NA NA NA NA NA ENOG411EEUQ MBD5 Q9SNC0 MBD5_ARATH Methyl-CpG-binding domain-containing protein 5 (AtMBD5) (MBD05) (Methyl-CpG-binding protein MBD5) FUNCTION: Transcriptional regulator that binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides. In addition, binds specifically methylated m(5)CpNpN but not m(5)CpNpG (N is A, T or C). Plays probably a role in gene silencing. {ECO:0000269|PubMed:12787239, ECO:0000269|PubMed:14605234, ECO:0000269|PubMed:15010609}. 20558 Methyl-CpG-binding domain-containing protein 5 (AtMBD5) (MBD05) (Methyl-CpG-binding protein MBD5) nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; perinucleolar chromocenter [GO:0010370]; enzyme binding [GO:0019899]; methyl-CpG binding [GO:0008327]; protein self-association [GO:0043621]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in seedlings, buds, stems and mature seeds, but barely in roots, exclusively in root meristem cells at tips (at protein level). {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:14605234, ECO:0000269|PubMed:15010609}. locus:2075135; AT3G46580 Methyl-CpG binding domain NA NA NA NA NA NA NA ENOG411EEUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor NA NA NA NA NA NA NA ENOG411EEUY T10B6_20 Q9LF48 Q9LF48_ARATH At5g17360 (DNA ligase) (Uncharacterized protein At5g17360/T10B6_20) (Uncharacterized protein T10B6_20) 19615 At5g17360 (DNA ligase) (Uncharacterized protein At5g17360/T10B6_20) (Uncharacterized protein T10B6_20) ligase activity [GO:0016874] locus:2167175; AT5G17360 NA NA NA NA NA NA NA NA ENOG411DT99 PPT1 Q93YP7,F4JPA9 COQ2_ARATH,F4JPA9_ARATH 4-hydroxybenzoate polyprenyltransferase, mitochondrial (4-HB polyprenyltransferase) (4HPT) (EC 2.5.1.39) (4-hydroxybenzoate nonaprenyltransferase) (Para-hydroxybenzoate--polyprenyltransferase) (PHB:PPT) (PHB:polyprenyltransferase) (Polyprenyltransferase 1) (AtPPT1),4-hydroxybenzoate polyprenyltransferase, mitochondrial (4-HB polyprenyltransferase) (EC 2.5.1.39) (4-hydroxybenzoate nonaprenyltransferase) (Para-hydroxybenzoate--polyprenyltransferase) (PHB:PPT) (PHB:polyprenyltransferase) DISRUPTION PHENOTYPE: Arrest of embryo development at an early stage of zygotic embryogenesis. {ECO:0000269|PubMed:15604701}. Frequently observed defects (~30%) in the mature seed in all the silique of heterozygous plants.,In the homozygous progeny (seeds) the development of the zygotic embryo was already delayed at the globular stage and was completely arrested at the heart stage compared with the normal embryo.,Mutation is lethal in the homozygous state. Embryo defective; Transition-H. Yamane-2007 FUNCTION: Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. Required for embryo development. {ECO:0000255|HAMAP-Rule:MF_03189, ECO:0000269|PubMed:15604701}.,FUNCTION: Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. {ECO:0000256|HAMAP-Rule:MF_03189}. PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03189}.,PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. {ECO:0000256|HAMAP-Rule:MF_03189}. ARA:AT4G23660-MONOMER;MetaCyc:MONOMER-17042; R-ATH-2142789; 2.5.1.39; 2.5.1.39 44604,47364 4-hydroxybenzoate polyprenyltransferase, mitochondrial (4-HB polyprenyltransferase) (4HPT) (EC 2.5.1.39) (4-hydroxybenzoate nonaprenyltransferase) (Para-hydroxybenzoate--polyprenyltransferase) (PHB:PPT) (PHB:polyprenyltransferase) (Polyprenyltransferase 1) (AtPPT1),4-hydroxybenzoate polyprenyltransferase, mitochondrial (4-HB polyprenyltransferase) (EC 2.5.1.39) (4-hydroxybenzoate nonaprenyltransferase) (Para-hydroxybenzoate--polyprenyltransferase) (PHB:PPT) (PHB:polyprenyltransferase) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; 4-hydroxybenzoate decaprenyltransferase activity [GO:0002083]; 4-hydroxybenzoate nonaprenyltransferase activity [GO:0047293]; isoprenoid biosynthetic process [GO:0008299]; ubiquinone biosynthetic process [GO:0006744],integral component of mitochondrial inner membrane [GO:0031305]; 4-hydroxybenzoate decaprenyltransferase activity [GO:0002083]; 4-hydroxybenzoate nonaprenyltransferase activity [GO:0047293]; embryo development ending in seed dormancy [GO:0009793]; isoprenoid biosynthetic process [GO:0008299]; ubiquinone biosynthetic process [GO:0006744] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:15604701}. locus:2128424; AT4G23660 4-hydroxybenzoate 4-hydroxybenzoate polyprenyltransferase, mitochondrial (4-HB polyprenyltransferase) (EC 2.5.1.39) (Para-hydroxybenzoate--polyprenyltransferase) (PHB:PPT) (PHB:polyprenyltransferase),Os08g0389300 protein (Fragment) Q6ZAH2,A0A0P0XFT7,A0A0P0XF65 Q6ZAH2_ORYSJ,A0A0P0XFT7_ORYSJ,A0A0P0XF65_ORYSJ OsPPT1 Os08g0322600 OSNPB_080322600 P0048E12.27,Os08g0389300 OSNPB_080389300,Os08g0388900 OSNPB_080388900 FUNCTION: Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. {ECO:0000256|HAMAP-Rule:MF_03189}. ENOG411DT98 SUN5 F4JPE9 SUN5_ARATH SUN domain-containing protein 5 (AtSUN5) DISRUPTION PHENOTYPE: No visible phenotype. Embryo lethal when associated with disruption mutants SUN3 and SUN4. {ECO:0000269|PubMed:25217773}. FUNCTION: Encodes a member of the mid-SUN subfamily of SUN-domain proteins. It is involved in early seed development and nuclear morphology. [TAIR]. 63594 SUN domain-containing protein 5 (AtSUN5) integral component of membrane [GO:0016021]; protein self-association [GO:0043621] locus:2138156; AT4G23950 Sad1 / UNC-like C-terminal Os06g0698001 protein,Os02g0209250 protein,Os01g0599900 protein A0A0P0X0F0,A0A0P0VG92,A0A0P0V4W3 A0A0P0X0F0_ORYSJ,A0A0P0VG92_ORYSJ,A0A0P0V4W3_ORYSJ Os06g0698001 OSNPB_060698001,Os02g0209250 OSNPB_020209250,Os01g0599900 OSNPB_010599900 ENOG411DT93 FHY Q84MD8 FHYRK_ARATH Bifunctional riboflavin kinase/FMN phosphatase [Includes: FMN phosphatase (EC 3.1.3.102) (FMN phosphohydrolase); Riboflavin kinase (EC 2.7.1.26) (Flavokinase)] FUNCTION: Bifunctional enzyme that catalyzes the hydrolysis of flavin-mononucleotide (FMN) to riboflavin (vitamin B2) and the phosphorylation of riboflavin to form (FMN) coenzyme. {ECO:0000269|PubMed:16183635}. PATHWAY: Cofactor biosynthesis; FMN biosynthesis; FMN from riboflavin (ATP route): step 1/1. ARA:AT4G21470-MONOMER;MetaCyc:AT4G21470-MONOMER; 3.1.3.102; 2.7.1.26 42110 Bifunctional riboflavin kinase/FMN phosphatase [Includes: FMN phosphatase (EC 3.1.3.102) (FMN phosphohydrolase); Riboflavin kinase (EC 2.7.1.26) (Flavokinase)] ATP binding [GO:0005524]; FMN adenylyltransferase activity [GO:0003919]; hydrolase activity [GO:0016787]; magnesium ion binding [GO:0000287]; riboflavin kinase activity [GO:0008531]; FMN biosynthetic process [GO:0009398]; riboflavin biosynthetic process [GO:0009231] locus:2119647; AT4G21470 riboflavin kinase (EC 2.7.1.26) GS1-like protein (HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed) (Os10g0464400 protein) (Putative glutamine synthetase) (cDNA clone:001-047-A01, full insert sequence) (cDNA clone:J013071M21, full insert sequence),Os10g0209300 protein Q8H921,A0A0P0XT88 Q8H921_ORYSJ,A0A0P0XT88_ORYSJ GLN LOC_Os10g32730 Os10g0464400 OsJ_31815 OSJNBa0071K18.3 OSNPB_100464400,Os10g0209300 OSNPB_100209300 ENOG411DT92 GAUT11 Q949Q1,Q1G3X2,F4HTT8 GAUTB_ARATH,Q1G3X2_ARATH,F4HTT8_ARATH Probable galacturonosyltransferase 11 (EC 2.4.1.-),Galacturonosyltransferase Abnormal xylan and pectin levels in cell walls-D. Mohnen-2009 FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls (By similarity). Involved in seed mucilage extrusion. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 61879,7446,11174 Probable galacturonosyltransferase 11 (EC 2.4.1.-),Galacturonosyltransferase Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; mucilage biosynthetic process [GO:0010192]; pectin biosynthetic process [GO:0045489],polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:2027453;,locus:4010713594; AT1G18580,AT1G74088 Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-) Q75IZ5 Q75IZ5_ORYSJ LOC_Os03g30000 Os03g0413400 Os03g30000 OSNPB_030413400 ENOG411DT91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3633) LIM domain-containing protein, putative, expressed (Os12g0596800 protein) (cDNA clone:J013039D10, full insert sequence),Os12g0596800 protein (Fragment) Q2QMP4,A0A0P0YBW6 Q2QMP4_ORYSJ,A0A0P0YBW6_ORYSJ Os12g0596800 LOC_Os12g40490 Os12g0596800 OSNPB_120596800,Os12g0596800 OSNPB_120596800 ENOG411DT90 WRKY60,WRKY18 Q9SK33,Q9C5T4,A0A1P8B2U6,A0A1P8B2R2,F4JSS8,A0A1P8B913 WRK60_ARATH,WRK18_ARATH,A0A1P8B2U6_ARATH,A0A1P8B2R2_ARATH,F4JSS8_ARATH,A0A1P8B913_ARATH Probable WRKY transcription factor 60 (WRKY DNA-binding protein 60),WRKY transcription factor 18 (WRKY DNA-binding protein 18) (AtWRKY18),WRKY DNA-binding protein 60,WRKY DNA-binding protein 18 Ninefold reduction in the growth of the bacterial pathogen PstDC3000. extensive chlorosis. more susceptible to the fungal pathogen B. cinerea than the double mutants.,Mutant is almost fully resistant to the virulent powdery mildew Golovinomyces orontii.,Susceptibility to the virulent powdery mildew Golovinomyces orontii remains unchanged compared to wild type.,little reduction in the growth of the bacterial pathogen PstDC3000,no reduction in the growth of the bacterial pathogen PstDC3000.,Enhanced susceptibility to Psm ES4326 infection.,sixfold reduction in the growth of the bacterial pathogen PstDC3000,twofold to threefold reduction in the growth of the bacterial pathogen PstDC3000 Resistant to bacterial infection; Susceptible to fungal infection-X. Dong-2006 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.,FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. MISCELLANEOUS: Constitutive expression at high level causes severe abnormality in plant growth. 30578,34766,25590,28179,27365,27303 Probable WRKY transcription factor 60 (WRKY DNA-binding protein 60),WRKY transcription factor 18 (WRKY DNA-binding protein 18) (AtWRKY18),WRKY DNA-binding protein 60,WRKY DNA-binding protein 18 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; regulation of defense response [GO:0031347]; response to molecule of bacterial origin [GO:0002237]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; identical protein binding [GO:0042802]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; regulation of defense response [GO:0031347]; response to chitin [GO:0010200]; response to molecule of bacterial origin [GO:0002237]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2047395;,locus:2124874; AT2G25000,AT4G31800 WRKY transcription factor WRKY transcription factor WRKY76 (OsWRKY76) Q6EPZ2 WRK76_ORYSJ WRKY76 Os09g0417600 OsJ_29378 OSNPB_090417600 P0014G10.39 FUNCTION: Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21961049}. ENOG411DT97 FIO1 Q5XEU1,F4IGH3,F4IGH5 Q5XEU1_ARATH,F4IGH3_ARATH,F4IGH5_ARATH U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase (EC 2.1.1.-) Early flowering; Abnormal circadian rhythms-H. Nam-2008 ARA:GQT-620-MONOMER; 2.1.1.- 53860,57532,42662 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase (EC 2.1.1.-) methyltransferase activity [GO:0008168],nucleus [GO:0005634]; 23S rRNA (adenine(1618)-N(6))-methyltransferase activity [GO:0052907]; circadian rhythm [GO:0007623]; photoperiodism [GO:0009648]; photoperiodism, flowering [GO:0048573]; rRNA base methylation [GO:0070475] locus:2047047; AT2G21070 Methyltransferase-like protein U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase (EC 2.1.1.-) Q6YUR7 Q6YUR7_ORYSJ Os02g0121200 OJ1020_C02.13 OSJNBb0088N06.22 OSNPB_020121200 ENOG411DT96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glycosyl hydrolases family 17 Glycosyl hydrolases family 17 protein, expressed (Os10g0160100 protein),Os06g0552500 protein Q33AW5,A0A0P0WXL8 Q33AW5_ORYSJ,A0A0P0WXL8_ORYSJ LOC_Os10g07290 Os10g0160100 OSNPB_100160100,Os06g0552500 OSNPB_060552500 ENOG411DT95 AG P17839,F4JSC8,A0A1P8B602 AG_ARATH,F4JSC8_ARATH,A0A1P8B602_ARATH Floral homeotic protein AGAMOUS,K-box region and MADS-box transcription factor family protein DISRUPTION PHENOTYPE: Mutations result in the replacement of the six stamens by six petals and of the carpels by a new mutant flower. {ECO:0000269|PubMed:1973265}. In the double mutant plants fertile stamens were replaced by sterile petaloid stamens.,Same phenotype as ag-1 single mutants with completely normal petals developing in the second whorl. In addition sepal number was normal in these flowers and no cases of sepal fusion were observed.,Mutant flowers do not have carpels and are indeterminate.,Extra whorls of petals. Extra whorls of sepals. Decreased stamen number.,Extra petal whorls. Extra sepal whorls.,Successive whorls of petals.,Single whorl of sepals then successive whorls of petals. No stamens or carpels.,No carples. Extra stamens formed following a spiral phyllotaxy. Indeterminate floral meristem. Homeotic floral transformations-E. Meyerowitz-1990 FUNCTION: Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:19956801}. 28723,27162,21036 Floral homeotic protein AGAMOUS,K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Detected early in the floral meristem but mostly expressed in stamen and carpel primordia. {ECO:0000269|PubMed:1675158}. AT4G18960 Transcription factor Os01g0201700 protein (Fragment) A0A0P0UZJ6 A0A0P0UZJ6_ORYSJ Os01g0201700 OSNPB_010201700 ENOG411DT94 F4J3Z2 F4J3Z2_ARATH Nucleic acid-binding proteins superfamily 74167 Nucleic acid-binding proteins superfamily locus:2086127; AT3G17030 NA Expressed protein (Os03g0832500 protein) Q7Y145 Q7Y145_ORYSJ LOC_Os03g61700 Os03g0832500 OSJNBa0078D06.31 OSNPB_030832500 ENOG411DT9Z HDA10,HDA9,HDA17 Q9M1N8,Q8H0W2,Q9LXN8,A0A1I9LT06,F4J364 HDA10_ARATH,HDA9_ARATH,HDA17_ARATH,A0A1I9LT06_ARATH,F4J364_ARATH Putative histone deacetylase 10 (EC 3.5.1.98),Histone deacetylase 9 (EC 3.5.1.98),Histone deacetylase 17 (EC 3.5.1.98),Uncharacterized protein FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250}. 3.5.1.98 16384,48688,18116,134563,137960 Putative histone deacetylase 10 (EC 3.5.1.98),Histone deacetylase 9 (EC 3.5.1.98),Histone deacetylase 17 (EC 3.5.1.98),Uncharacterized protein nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; sequence-specific DNA binding [GO:0043565]; histone H3-K9 deacetylation [GO:1990619]; negative regulation of seed germination [GO:0010187]; regulation of leaf senescence [GO:1900055]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2098105;,locus:2098115;,locus:2076053;,locus:2098130; AT3G44660,AT3G44680,AT3G44490,AT3G44690 histone deacetylase Os04g0409600 protein A0A0P0WA41 A0A0P0WA41_ORYSJ Os04g0409600 OSNPB_040409600 ENOG411DT9Y P4H12 Q8GXT7,A0A1P8B6T9,A0A1P8B6T8,A0A1P8B6U0 P4H12_ARATH,A0A1P8B6T9_ARATH,A0A1P8B6T8_ARATH,A0A1P8B6U0_ARATH Probable prolyl 4-hydroxylase 12 (AtP4H12) (EC 1.14.11.2),Oxoglutarate/iron-dependent oxygenase FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. {ECO:0000250|UniProtKB:F4JAU3}. ARA:AT4G25600-MONOMER; 1.14.11.2 32173,25158,25394,26475 Probable prolyl 4-hydroxylase 12 (AtP4H12) (EC 1.14.11.2),Oxoglutarate/iron-dependent oxygenase endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656],iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2131884; AT4G25600 ShKT NA NA NA NA NA NA NA ENOG411DT9X GDI1 Q9SFC6 GDIR_ARATH Rho GDP-dissociation inhibitor 1 (AtRhoGDI1) (Rho GDI-1) FUNCTION: Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them. {ECO:0000250}. R-ATH-194840; 27231 Rho GDP-dissociation inhibitor 1 (AtRhoGDI1) (Rho GDI-1) cytoplasm [GO:0005737]; GTPase activator activity [GO:0005096]; Rho GDP-dissociation inhibitor activity [GO:0005094]; cell tip growth [GO:0009932]; root epidermal cell differentiation [GO:0010053] locus:2077462; AT3G07880 rho GDP-dissociation inhibitor Os02g0719000 protein (cDNA clone:J033007K19, full insert sequence),Os06g0318300 protein (Putative Rho GDP dissociation inhibitor 2) (cDNA clone:J013041C14, full insert sequence),Os06g0318300 protein (Putative Rho GDP dissociation inhibitor 2) (cDNA clone:001-034-H12, full insert sequence) Q0DY32,Q5ZA14,Q5ZA13 Q0DY32_ORYSJ,Q5ZA14_ORYSJ,Q5ZA13_ORYSJ Os02g0719000 Os02g0719000 OSNPB_020719000,P0592B08.1-2 P0468A12.27-2 Os06g0318300 OsJ_21142 OSNPB_060318300,P0592B08.1-1 Os06g0318300 P0468A12.27-1 OSNPB_060318300 ENOG411DT9S FRS3 Q9ZVC9 FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 FUNCTION: Putative transcription activator involved in regulating light control of development. 96258 Protein FAR1-RELATED SEQUENCE 3 nucleus [GO:0005634]; plasmodesma [GO:0009506]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2059304; AT2G27110 protein FAR1-RELATED SEQUENCE 3-like NA NA NA NA NA NA NA ENOG411DT9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-acyltransferase WSD1-like NA NA NA NA NA NA NA ENOG411DT9Q PLP9 Q93ZQ3 PLP9_ARATH Probable inactive patatin-like protein 9 (AtPLP9) (Patatin-related phospholipase A IIIdelta) (pPLAIIId) (Phospholipase A IIIB) (AtPLAIIIB) ARA:GQT-1673-MONOMER; 41487 Probable inactive patatin-like protein 9 (AtPLP9) (Patatin-related phospholipase A IIIdelta) (pPLAIIId) (Phospholipase A IIIB) (AtPLAIIIB) hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in flowers and siliques. {ECO:0000269|PubMed:21447788}. locus:2077269; AT3G63200 patatin group A-3-like NA NA NA NA NA NA NA ENOG411DT9P Q9FWA3,Q9FFR3,Q9SH69 6GPD3_ARATH,6PGD2_ARATH,6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 (EC 1.1.1.44),6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic (EC 1.1.1.44),6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic (EC 1.1.1.44) FUNCTION: Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. {ECO:0000250}. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 3/3. ARA:AT5G41670-MONOMER;,ARA:AT1G64190-MONOMER; R-ATH-71336; 1.1.1.44 53577,53318,53378 6-phosphogluconate dehydrogenase, decarboxylating 3 (EC 1.1.1.44),6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic (EC 1.1.1.44),6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic (EC 1.1.1.44) chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; P4 peroxisome [GO:0019822]; peroxisome [GO:0005777]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; D-gluconate metabolic process [GO:0019521]; male-female gamete recognition during double fertilization [GO:0080173]; pentose-phosphate shunt [GO:0006098]; response to salt stress [GO:0009651],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; plastid [GO:0009536]; phosphogluconate 2-dehydrogenase activity [GO:0008114]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; D-gluconate metabolic process [GO:0019521]; pentose-phosphate shunt, oxidative branch [GO:0009051]; response to cadmium ion [GO:0046686]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to sucrose [GO:0009744],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; membrane [GO:0016020]; plastid [GO:0009536]; phosphogluconate 2-dehydrogenase activity [GO:0008114]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; D-gluconate metabolic process [GO:0019521]; pentose-phosphate shunt, oxidative branch [GO:0009051]; response to salt stress [GO:0009651] locus:2074577;,locus:2160422;,locus:2024542; AT3G02360,AT5G41670,AT1G64190 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2) with concomitant reduction of NADP to NADPH (By similarity) 6-phosphogluconate dehydrogenase, decarboxylating 1 (OsG6PGH1) (EC 1.1.1.44),6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic (OsG6PGH2) (EC 1.1.1.44),Os11g0484500 protein (Fragment),6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) (Fragment) Q9LI00,Q2R480,A0A0P0Y2C4,A0A0N7KLE5 6PGD1_ORYSJ,6PGD2_ORYSJ,A0A0P0Y2C4_ORYSJ,A0A0N7KLE5_ORYSJ G6PGH1 Os06g0111500 LOC_Os06g02144 OsJ_19864 P0029D06.14-1,G6PGH2 Os11g0484500 LOC_Os11g29400,Os11g0484500 OSNPB_110484500,Os06g0111500 OSNPB_060111500 FUNCTION: Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. {ECO:0000250}. ENOG411DT9W MAA21_60,TRM5 Q9LY72,A0A1I9LMK3 Q9LY72_ARATH,A0A1I9LMK3_ARATH At3g63430 (Uncharacterized protein MAA21_60) (Zinc finger CCCH domain protein),Zinc finger CCCH domain protein 61147,57657 At3g63430 (Uncharacterized protein MAA21_60) (Zinc finger CCCH domain protein),Zinc finger CCCH domain protein regulation of monopolar cell growth [GO:0051513] locus:2087413; AT3G63430 expressed protein Os11g0587300 protein A0A0P0Y3T9 A0A0P0Y3T9_ORYSJ Os11g0587300 OSNPB_110587300 ENOG411DT9V Q8GYT8,A0A1P8B1T2,A0A1P8B1S9 Q8GYT8_ARATH,A0A1P8B1T2_ARATH,A0A1P8B1S9_ARATH UPSTREAM OF FLC protein (DUF966) (Uncharacterized protein At2g28150),UPSTREAM OF FLC protein (DUF966) 60084,43650,50717 UPSTREAM OF FLC protein (DUF966) (Uncharacterized protein At2g28150),UPSTREAM OF FLC protein (DUF966) plasma membrane [GO:0005886] locus:2046213; AT2G28150 function DUF966 domain containing protein expressed Auxin-regulated protein, putative, expressed (Expressed protein) (Os03g0692400 protein),Os09g0571000 protein,Os08g0561600 protein (Putative auxin-regulated protein),Os08g0561600 protein Q6AV45,C7J6N6,Q6YYY6,Q0J3N8 Q6AV45_ORYSJ,C7J6N6_ORYSJ,Q6YYY6_ORYSJ,Q0J3N8_ORYSJ LOC_Os03g48600 Os03g0692400 OsJ_12184 OSJNBb0101N11.16 OSNPB_030692400,Os09g0571000 OSNPB_090571000,P0604E01.40-1 Os08g0561600 P0543D10.0-1 OSNPB_080561600,Os08g0561600 Os08g0561600 OSNPB_080561600 ENOG411DT9U AMC4,AMC5 O64517,O64518 MCA4_ARATH,MCA5_ARATH Metacaspase-4 (AtMC4) (EC 3.4.22.-) (Metacaspase 2d) (AtMCP2d) (Metacaspase-7) [Cleaved into: Metacaspase-4 subunit p20; Metacaspase-4 subunit p10],Metacaspase-5 (AtMC5) (EC 3.4.22.-) (Metacaspase 2b) (AtMCP2b) (Metacaspase-6) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions, but reduced sensitivity to cell death induced by the mycotoxin fumonisin B1, methyl viologen (oxidative stress) and infection with an avirulent strain of P.syringae DC3000. {ECO:0000269|PubMed:21395887}. FUNCTION: Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Plays a positive regulatory role in biotic and abiotic stress-induced programmed cell death. {ECO:0000269|PubMed:15326173, ECO:0000269|PubMed:21209078, ECO:0000269|PubMed:21395887}.,FUNCTION: Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. May be involved in the modulation of programmed cell death activated by oxidative stress. {ECO:0000269|PubMed:15691845}. MISCELLANEOUS: Plants overexpressing MCA4 are more sensitive to the mycotoxin fumonisin B1 and methyl viologen (oxidative stress) and exhibited accelerated cell-death progression. 3.4.22.- 45484,44846 Metacaspase-4 (AtMC4) (EC 3.4.22.-) (Metacaspase 2d) (AtMCP2d) (Metacaspase-7) [Cleaved into: Metacaspase-4 subunit p20; Metacaspase-4 subunit p10],Metacaspase-5 (AtMC5) (EC 3.4.22.-) (Metacaspase 2b) (AtMCP2b) (Metacaspase-6) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; cysteine-type endopeptidase activity [GO:0004197]; cysteine-type peptidase activity [GO:0008234]; identical protein binding [GO:0042802]; defense response [GO:0006952]; positive regulation of programmed cell death [GO:0043068]; protein autoprocessing [GO:0016540],chloroplast [GO:0009507]; cysteine-type endopeptidase activity [GO:0004197]; positive regulation of programmed cell death [GO:0043068] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, cauline leaves, pollen and embryos. {ECO:0000269|PubMed:21395887}.,TISSUE SPECIFICITY: Expressed in roots, leaves, cauline leaves and flower buds. {ECO:0000269|PubMed:21395887}. locus:2207350;,locus:2207430; AT1G79340,AT1G79330 Metacaspase Os01g0799900 protein (Putative latex-abundant protein) (cDNA clone:J023138I07, full insert sequence),Latex-abundant protein-like protein (Os05g0496500 protein) (Putative latex-abundant protein) Q8LJ88,Q84VF0 Q8LJ88_ORYSJ,Q84VF0_ORYSJ Os01g0799900 Os01g0799900 OsJ_03763 OSNPB_010799900 P0691E06.32,Os05g0496500 Os05g0496500 OJ1118_C04.3 OsJ_19068 OSNPB_050496500 ENOG411DT9T Q9C5K7,Q8H1S4,F4IDQ0,F4IDQ2 ACCH2_ARATH,ACCH3_ARATH,F4IDQ0_ARATH,F4IDQ2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2,1-aminocyclopropane-1-carboxylate oxidase homolog 3,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT1G06640-MONOMER;,ARA:AT1G06650-MONOMER; 41745,42020,32289,42819 1-aminocyclopropane-1-carboxylate oxidase homolog 2,1-aminocyclopropane-1-carboxylate oxidase homolog 3,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2009210;,locus:2009175;,locus:2824199; AT1G06640,AT1G06650,AT1G06645 1-aminocyclopropane-1-carboxylate oxidase homolog NA NA NA NA NA NA NA ENOG411DT9K PLT4 Q0WUU6,A0A1P8B229 PLT4_ARATH,A0A1P8B229_ARATH Probable polyol transporter 4,Major facilitator superfamily protein FUNCTION: Plasma membrane sugar-proton symporter. {ECO:0000250}. 56801,50797 Probable polyol transporter 4,Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2051443; AT2G20780 transporter OSJNBa0074L08.15 protein (OSJNBa0081C01.3 protein) (Os04g0529800 protein) (cDNA clone:J023028O21, full insert sequence),Os04g0529800 protein (Fragment) Q7X6M3,A0A0N7KJE6 Q7X6M3_ORYSJ,A0A0N7KJE6_ORYSJ Os04g0529800 OsJ_15554 OSJNBa0074L08.15 OSJNBa0081C01.3 OSNPB_040529800,Os04g0529800 OSNPB_040529800 ENOG411DT9J CYP63 Q9LY75 CYP63_ARATH Peptidyl-prolyl cis-trans isomerase CYP63 (AtCYP63) (PPIase CYP63) (EC 5.2.1.8) (Cyclophilin-63) (Cyclophilin-like protein CypRS64) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be implicated in the folding, transport, and assembly of proteins. Probably involved in early steps of spliceosomal assembly. 5.2.1.8 63540 Peptidyl-prolyl cis-trans isomerase CYP63 (AtCYP63) (PPIase CYP63) (EC 5.2.1.8) (Cyclophilin-63) (Cyclophilin-like protein CypRS64) nuclear speck [GO:0016607]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2087383; AT3G63400 PPIases accelerate the folding of proteins Os02g0204300 protein,Os07g0179200 protein (Fragment) A0A0P0VG74,A0A0N7KN09 A0A0P0VG74_ORYSJ,A0A0N7KN09_ORYSJ Os02g0204300 OSNPB_020204300,Os07g0179200 OSNPB_070179200 ENOG411DT9I PER47 Q9SZB9,A0A1P8B4A9 PER47_ARATH,A0A1P8B4A9_ARATH Peroxidase 47 (Atperox P47) (EC 1.11.1.7) (ATP32),Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G33420-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35975,41230 Peroxidase 47 (Atperox P47) (EC 1.11.1.7) (ATP32),Peroxidase (EC 1.11.1.7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Up-regulated during leaf development. {ECO:0000269|Ref.5}. locus:2119251; AT4G33420 peroxidase Peroxidase (EC 1.11.1.7) Q6ZCC2 Q6ZCC2_ORYSJ Os08g0113000 Os08g0113000 OsJ_25802 OSNPB_080113000 P0498H04.27 ENOG411DT9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os01g0378600 protein (Os01g0379001 protein),Os12g0421300 protein (Fragment) Q5VNR7,A0A0P0Y9V6 Q5VNR7_ORYSJ,A0A0P0Y9V6_ORYSJ Os01g0379001 Os01g0378600 B1150E06.10 OsJ_01851 OSNPB_010378600 OSNPB_010379001,Os12g0421300 OSNPB_120421300 ENOG411DT9N IAA27 Q9ZSY8 IAA27_ARATH Auxin-responsive protein IAA27 (Auxin-induced protein 27) (Indoleacetic acid-induced protein 27) (Phytochrome-associated protein 2) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 33196 Auxin-responsive protein IAA27 (Auxin-induced protein 27) (Indoleacetic acid-induced protein 27) (Phytochrome-associated protein 2) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] locus:2119976; AT4G29080 auxin-responsive protein Auxin-responsive protein IAA17 (Indoleacetic acid-induced protein 17),Auxin-responsive protein IAA21 (Indoleacetic acid-induced protein 21),Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3),Auxin-responsive protein (Fragment) Q75GB1,Q5Z749,Q5NB25,A0A0P0WJS7,A0A0P0WWB0 IAA17_ORYSJ,IAA21_ORYSJ,IAA3_ORYSJ,A0A0P0WJS7_ORYSJ,A0A0P0WWB0_ORYSJ IAA17 Os05g0230700 LOC_Os05g14180 B1402B06.19 OsJ_17700 OSJNBa0042F15.4,IAA21 Os06g0335500 LOC_Os06g22870 OSJNBa0012F14.28,IAA3 Os01g0231000 LOC_Os01g13030 P0431F01.14 P0485D09.31,Os05g0230700 OSNPB_050230700,Os06g0335500 OSNPB_060335500 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. ENOG411DT9M DCI1 Q9FHR8 DCI1_ARATH Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal (AtDCI1) (EC 5.3.3.-) FUNCTION: Converts 3,5-dienoyl-CoAs to the corresponding 2,4-dienoyl-CoAs. Involved in degradation of unsaturated fatty acids. {ECO:0000269|PubMed:16040662}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. {ECO:0000305}. ARA:AT5G43280-MONOMER;MetaCyc:AT5G43280-MONOMER; 5.3.3.- 29920 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal (AtDCI1) (EC 5.3.3.-) peroxisome [GO:0005777]; delta3,5-delta2,4-dienoyl-CoA isomerase activity [GO:0051750]; fatty acid beta-oxidation [GO:0006635]; fatty acid catabolic process [GO:0009062] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16040662}. locus:2169258; AT5G43280 delta(35)delta(24)-dienoyl-coa isomerase Enoyl CoA hydratase-like protein (Os01g0925200 protein) (Putative enoyl coenzyme A hydratase 1, peroxisomal) (cDNA clone:001-128-E06, full insert sequence),Os04g0429075 protein Q8RUL6,A0A0P0WAC6 Q8RUL6_ORYSJ,A0A0P0WAC6_ORYSJ P0482D04.4 Os01g0925200 B1033B05.26 OSNPB_010925200,Os04g0429075 OSNPB_040429075 ENOG411DT9C Q9M9N9 Q9M9N9_ARATH At3g03210 (Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein) (T17B22.10 protein) 41337 At3g03210 (Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein) (T17B22.10 protein) Golgi apparatus [GO:0005794]; Golgi lumen [GO:0005796]; integral component of membrane [GO:0016021]; acetyltransferase activity [GO:0016407]; xylan O-acetyltransferase activity [GO:1990538]; xylan biosynthetic process [GO:0045492] locus:2097710; AT3G03210 NA Expressed protein (Os10g0539400 protein) (cDNA clone:J023085I16, full insert sequence) Q8LMY3 Q8LMY3_ORYSJ Os10g0539400 LOC_Os10g39400 OSJNBa0025B05.3 OSNPB_100539400 ENOG411DT9B YUC11,YUC10 Q9LPL3,Q9FVQ0 YUC11_ARATH,YUC10_ARATH Probable indole-3-pyruvate monooxygenase YUCCA11 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA11),Probable indole-3-pyruvate monooxygenase YUCCA10 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA10) FUNCTION: Involved in auxin biosynthesis. {ECO:0000269|PubMed:17704214}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. 1.14.13.168 43358,42387 Probable indole-3-pyruvate monooxygenase YUCCA11 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA11),Probable indole-3-pyruvate monooxygenase YUCCA10 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA10) membrane [GO:0016020]; flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851],indole-3-pyruvate monooxygenase activity [GO:0103075]; auxin biosynthetic process [GO:0009851] DEVELOPMENTAL STAGE: Expression relatively broad during early stages of embryogenesis and more restricted to discrete groups of cells in mature embryos. Later, expression mainly restricted to the cotyledons and the apical meristem. {ECO:0000269|PubMed:17704214}. locus:2026967;,locus:2028558; AT1G21430,AT1G48910 flavin-containing monooxygenase Flavin-binding monooxygenase-like family protein (Os11g0207900 protein),Os02g0272200 protein (Putative flavin-containing monooxygenase),Os11g0287100 protein,Os01g0274100 protein,Os01g0273800 protein (Putative flavin-containing monooxygenase YUCCA3) (cDNA clone:002-138-H02, full insert sequence),Os11g0207700 protein,Os12g0189500 protein Q2R929,Q6EST7,Q5R1L2,A2ZRQ8,Q9SDE9,A0A0P0Y011,A0A0P0Y7T8 Q2R929_ORYSJ,Q6EST7_ORYSJ,Q5R1L2_ORYSJ,A2ZRQ8_ORYSJ,Q9SDE9_ORYSJ,A0A0P0Y011_ORYSJ,A0A0P0Y7T8_ORYSJ Os11g0207900 LOC_Os11g10170 OsJ_33313 OSNPB_110207900,P0521F09.15 Os02g0272200 OSNPB_020272200,Os11g0287100 LOC_Os11g18380 OSNPB_110287100,Os01g0274100 Os01g0274100 OsJ_01267 OSNPB_010274100,Os01g0273800 Os01g0273800 OSNPB_010273800 P0424A08.4,Os11g0207700 OSNPB_110207700,Os12g0189500 OSNPB_120189500 ENOG411DT9A CUL4 Q9STG3,Q9SZ75,Q8LGH4 CLL4_ARATH,CLL5_ARATH,CUL4_ARATH Putative cullin-like protein 4,Cullin-like protein 5,Cullin-4 (AtCUL4) DISRUPTION PHENOTYPE: Small plants with mishaped cotyledons and leaves. Reduction of the number and the size of lateral roots. Increased sensitivity to sugar, cytokinin and abscisic acid (ABA). Early flowering under short day (SD) conditions. {ECO:0000269|PubMed:16792691, ECO:0000269|PubMed:16844902, ECO:0000269|PubMed:18223036, ECO:0000269|PubMed:20061554}. reduced growth and aberrant leaf development. Few lateral roots; Abnormal leaf stomata and vascular tissue-H. Hellmann-2006 FUNCTION: Component of the CUL4-RBX1-CDD (COP10-DDB1a-DET1) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Participates in the CDD complex to light-mediated control of development. May repress photomorphogenesis through enhancing COP1 E3 ubiquitin-protein ligase activity. Acts together with the CUL4-DDB1-COP1-SPA E3 ubiquitin-protein ligase complexes in the repression of photomorphogenesis and flowering time. Component ot the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex which mediates ubiquitination and subsequent degradation of AKIN10. Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling and may target ABI5 for degradation. {ECO:0000269|PubMed:16792691, ECO:0000269|PubMed:16844902, ECO:0000269|PubMed:18223036, ECO:0000269|PubMed:18552200, ECO:0000269|PubMed:20061554, ECO:0000269|PubMed:20525848}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-110314;R-ATH-5696394;R-ATH-5696395;R-ATH-5696400;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-8951664; 2.3.2.B10; 28281,50244,91471 Putative cullin-like protein 4,Cullin-like protein 5,Cullin-4 (AtCUL4) anaphase-promoting complex [GO:0005680]; ubiquitin protein ligase binding [GO:0031625]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; ubiquitin protein ligase binding [GO:0031625]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; ubiquitin protein ligase binding [GO:0031625]; abscisic acid-activated signaling pathway [GO:0009738]; cotyledon development [GO:0048825]; DNA repair [GO:0006281]; flower development [GO:0009908]; fruit development [GO:0010154]; hormone-mediated signaling pathway [GO:0009755]; leaf development [GO:0048366]; negative regulation of photomorphogenesis [GO:0010100]; photomorphogenesis [GO:0009640]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; shoot system development [GO:0048367]; short-day photoperiodism, flowering [GO:0048575]; sugar mediated signaling pathway [GO:0010182] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16792691}. locus:2102772;,locus:2118111;,locus:2162060; AT3G46910,AT4G12100,AT5G46210 cullin 4 Os03g0786800 protein (Fragment) Q0DMY2 Q0DMY2_ORYSJ Os03g0786800 Os03g0786800 OSNPB_030786800 ENOG411DT9G PCMP-H92 Q9LFL5 PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 94637 Pentatricopeptide repeat-containing protein At5g16860 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2148101; AT5G16860 Pentatricopeptide repeat-containing protein Os04g0218100 protein (Fragment),Os05g0305300 protein (Fragment) Q0JER4,A0A0P0WKI2 Q0JER4_ORYSJ,A0A0P0WKI2_ORYSJ Os04g0218100 Os04g0218100 OSNPB_040218100,Os05g0305300 OSNPB_050305300 ENOG411DT9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) Putative zinc finger CCCH domain-containing protein 21 (OsC3H21),Os03g0301500 protein Q10MN8,A0A0P0VWG7 C3H21_ORYSJ,A0A0P0VWG7_ORYSJ Os03g0301500 LOC_Os03g18950 OsJ_010105,Os03g0301500 OSNPB_030301500 ENOG411DT9E PFK5 Q8VYN6 PFKA5_ARATH ATP-dependent 6-phosphofructokinase 5, chloroplastic (ATP-PFK 5) (Phosphofructokinase 5) (EC 2.7.1.11) (Phosphohexokinase 5) FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000255|HAMAP-Rule:MF_03186}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4. {ECO:0000255|HAMAP-Rule:MF_03186}. ARA:AT2G22480-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.11; 2.7.1.11 58615 ATP-dependent 6-phosphofructokinase 5, chloroplastic (ATP-PFK 5) (Phosphofructokinase 5) (EC 2.7.1.11) (Phosphohexokinase 5) chloroplast [GO:0009507]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; fructose 6-phosphate metabolic process [GO:0006002]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:17485088}. locus:2041208; AT2G22480 6-phosphofructokinase 5 ATP-dependent 6-phosphofructokinase (ATP-PFK) (Phosphofructokinase) (EC 2.7.1.11) (Phosphohexokinase),Os08g0439000 protein Q338G3,Q0J1S6,A0A0N7KPX2 Q338G3_ORYSJ,Q0J1S6_ORYSJ,A0A0N7KPX2_ORYSJ Os10g0405600 PFK LOC_Os10g26570 Os10g0405600 OsJ_31463 OSNPB_100405600,Os09g0415800 PFK OSNPB_090415800,Os08g0439000 OSNPB_080439000 FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000256|HAMAP-Rule:MF_03186}. ENOG411DT9D PTEN1 Q9FLZ5 PTEN1_ARATH Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN1 (EC 3.1.3.48) (EC 3.1.3.67) (Protein PHOSPHATASE AND TENSIN HOMOLOG 1) (AtPTEN1) DISRUPTION PHENOTYPE: Pollen cell death after mitosis, during the late stage of development, characterized by collapsed pollen grains, shrunken, with highly deformed exines and reduced size. {ECO:0000269|PubMed:12368500}. Collapsed pollen-S. Luan-2002 FUNCTION: Protein tyrosine phosphatase that exhibits also lipid phosphatase activity. Can use phosphatidylinositol substrates such as PtdIns(3,4,5)P(3) as substrate. Pollen-specific phosphatase required for pollen development. {ECO:0000269|PubMed:12368500}. ARA:AT5G39400-MONOMER; R-ATH-1660514; 3.1.3.48; 3.1.3.67 47355 Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN1 (EC 3.1.3.48) (EC 3.1.3.67) (Protein PHOSPHATASE AND TENSIN HOMOLOG 1) (AtPTEN1) phosphatase activity [GO:0016791]; phosphatidylinositol phosphate phosphatase activity [GO:0052866]; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity [GO:0016314]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; phosphatidylinositol dephosphorylation [GO:0046856]; pollen development [GO:0009555] TISSUE SPECIFICITY: Expressed exclusively in pollen grains during the late stage of development (at protein level). {ECO:0000269|PubMed:12368500, ECO:0000269|PubMed:21864294}. locus:2175713; AT5G39400 C2 domain of PTEN tumour-suppressor protein NA NA NA NA NA NA NA ENOG411DVQ9 GLE1 Q0WPZ7 GLE1_ARATH Protein GLE1 (AtGLE1) (Protein EMBRYO DEFECTIVE 1745) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22898497}. FUNCTION: Required for seed viability. {ECO:0000269|PubMed:22898497}. 69640 Protein GLE1 (AtGLE1) (Protein EMBRYO DEFECTIVE 1745) cytoplasm [GO:0005737]; nuclear envelope [GO:0005635]; nuclear pore cytoplasmic filaments [GO:0044614]; inositol hexakisphosphate binding [GO:0000822]; phospholipid binding [GO:0005543]; translation initiation factor binding [GO:0031369]; mRNA export from nucleus [GO:0006406]; poly(A)+ mRNA export from nucleus [GO:0016973]; regulation of translational initiation [GO:0006446]; regulation of translational termination [GO:0006449]; seed development [GO:0048316] locus:2031835; AT1G13120 GLE1-like protein Os02g0596100 protein (Fragment) A0A0P0VL78 A0A0P0VL78_ORYSJ Os02g0596100 OSNPB_020596100 ENOG411DVQ8 ARPC2A Q8LGI3 ARC2A_ARATH Actin-related protein 2/3 complex subunit 2A (Actin-related protein C2A) (Arp2/3 complex 34 kDa subunit) (p34-ARC) (Protein DISTORTED TRICHOMES 2) DISRUPTION PHENOTYPE: Distorted trichomes. {ECO:0000269|PubMed:15295064}. Slightly reduced fresh weight; Abnormal trichomes; Short hypocotyl in the dark-D. Szymanski-2004 FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament (By similarity). Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. {ECO:0000250, ECO:0000269|PubMed:15086808, ECO:0000269|PubMed:15295064}. R-ATH-2029482;R-ATH-5663213; 36041 Actin-related protein 2/3 complex subunit 2A (Actin-related protein C2A) (Arp2/3 complex 34 kDa subunit) (p34-ARC) (Protein DISTORTED TRICHOMES 2) Arp2/3 protein complex [GO:0005885]; cell projection [GO:0042995]; cytoplasm [GO:0005737]; actin filament binding [GO:0051015]; structural constituent of cytoskeleton [GO:0005200]; actin filament organization [GO:0007015]; actin filament polymerization [GO:0030041]; Arp2/3 complex-mediated actin nucleation [GO:0034314]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed at low levels in all tissues with a relatively highest expression in inflorescences. {ECO:0000269|PubMed:12913159, ECO:0000269|PubMed:15086808}. locus:505006160; AT1G30825 protein 2 3 complex subunit Arp2/3 complex 34 kDa subunit (Fragment) Q0JKR7 Q0JKR7_ORYSJ Os01g0654300 Os01g0654300 OSNPB_010654300 FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. {ECO:0000256|RuleBase:RU364015}. ENOG411DVQ5 MYB98 Q9S7L2 MYB98_ARATH Transcription factor MYB98 (Myb-related protein 98) (AtMYB98) DISRUPTION PHENOTYPE: Impaired in pollen tube attraction associated with a reduced cytoplasmic calcium burst during pollen tube tips growing (PubMed:17937500, PubMed:23093426). Altered expression of several ovule-specific genes (PubMed:17937500). {ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:23093426}. Specifically affects female gametophyte while overall morphology of the mutant plants was normal. The cell wall of synergid cells in mutant plants lacked extensive invaginations characteristic of the filiform apparatus. Instead an extremely thickened cell wall was observed. In most cases synergid cells lacked cell wall projections completely and had uniform electron density. Also pollen tube guidance is affected in mutant female gametophytes. In wild-type pollen (and myb98 mutant pollen) pollen tubes grew from the placenta to the funiculus but failed to grow into the micropyle. Despite fertilization is not affected in mutant plant female gametophytes affected by the myb98-1 mutation can become fertilized and give rise to seeds. Thus with the exception of pollen tube guidance the synergid cells appear to function normally in myb98-1 female gametophytes. Female gametophyte defective, Homozygotes are viable: Severely reduced fertility-G. Drews-2005 FUNCTION: Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. 50116 Transcription factor MYB98 (Myb-related protein 98) (AtMYB98) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; embryo sac development [GO:0009553]; pollen tube guidance [GO:0010183]; regulation of embryo sac central cell differentiation [GO:0045691]; regulation of synergid differentiation [GO:0045697]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}. TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}. locus:2124162; AT4G18770 Transcription factor Os06g0162700 protein (Fragment) A0A0P0WSX1 A0A0P0WSX1_ORYSJ Os06g0162700 OSNPB_060162700 ENOG411DVQ4 KIN7A Q8S905 KN7A_ARATH Kinesin-like protein KIN-7A (NPK1-activating kinesin-1) (AtNACK1) (Protein HINKEL) DISRUPTION PHENOTYPE: Growth defects, dwarf plants with small, humped cotyledons and leaves. Development arrested at the vegetative stage without production of reproductive organs. {ECO:0000269|PubMed:11818068, ECO:0000269|PubMed:11955449, ECO:0000269|PubMed:15569152}. Seedling lethal-U. Mayer-2002 FUNCTION: Probable plus end-directed motor protein that functions in the NACK-PQR (ANP1-MKK6-MPK4) MAP kinase signaling pathway, which is essential for somatic cell cytokinesis, especially for the cell-plate formation and its expansion. Regulates the activity and the localization of ANP1, probably by association through the non-catalytic region of the kinase. Functionally redundant with NACK2 and essential to promote the progression of cytokinesis and for cellularization (formation of the cell plate) during microgametogenesis and megagametogenesis. {ECO:0000269|PubMed:11818068, ECO:0000269|PubMed:11955449, ECO:0000269|PubMed:15569152, ECO:0000269|PubMed:19825582, ECO:0000269|PubMed:20802223, ECO:0000269|PubMed:22006334, ECO:0000303|PubMed:26745275}. 110174 Kinesin-like protein KIN-7A (NPK1-activating kinesin-1) (AtNACK1) (Protein HINKEL) kinesin complex [GO:0005871]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; cytokinesis by cell plate formation [GO:0000911]; embryo sac cellularization [GO:0009558]; gametophyte development [GO:0048229]; microtubule-based movement [GO:0007018]; pollen development [GO:0009555] DEVELOPMENTAL STAGE: Expressed in a patchy pattern during embryogenesis. {ECO:0000269|PubMed:11818068}. TISSUE SPECIFICITY: Expressed in roots, flowers, pollen mother cells and embryos. {ECO:0000269|PubMed:15569152}. locus:2014069; AT1G18370 Domain of unknown function (DUF3490) Kinesin-like protein KIN-7A (NPK1-activating kinesin-like protein) (OsNACK) (Protein DWARF BAMBOO SHOOT 1) Q9AWM8 KN7A_ORYSJ KIN7A DBS1 NACK Os01g0513900 LOC_Os01g33040 OsJ_01991 P0504D03.36 FUNCTION: May be essential to promote the progression of cytokinesis during node-internode differentiation. {ECO:0000269|PubMed:16183700}. ENOG411DVQ7 GAT1 F4HW02,A0A1P8ANX9,A0A1P8ANY8 GAT1_ARATH,A0A1P8ANX9_ARATH,A0A1P8ANY8_ARATH GABA transporter 1 (AtGAT1) (Bidirectional amino acid transporter 1),Transmembrane amino acid transporter family protein FUNCTION: High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8-aminocaprylic acid, but does not mediate the transport of proline or glycine betaine. {ECO:0000269|PubMed:16407306, ECO:0000269|PubMed:19199104}. 49695,36580,38815 GABA transporter 1 (AtGAT1) (Bidirectional amino acid transporter 1),Transmembrane amino acid transporter family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; gamma-aminobutyric acid transmembrane transporter activity [GO:0015185]; amino acid transmembrane transport [GO:0003333]; gamma-aminobutyric acid transport [GO:0015812],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in roots, leaves and stems. {ECO:0000269|PubMed:16407306, ECO:0000269|PubMed:19199104}. locus:2199978; AT1G08230 transporter Os01g0857400 protein (Putative betaine/proline transporter) Q94DE5 Q94DE5_ORYSJ Os01g0857400 OJ1402_H07.33 OSNPB_010857400 P0683F02.10 ENOG411DVQ6 A2RVW1 A2RVW1_ARATH At4g33480 (BTB/POZ domain protein TNFAIP protein) Increased root hair density. 36628 At4g33480 (BTB/POZ domain protein TNFAIP protein) locus:2119216; AT4G33480 Protein of unknown function (DUF3727) Os04g0692200 protein (cDNA clone:001-035-A02, full insert sequence) (cDNA clone:J023110I24, full insert sequence) Q0J8Q7 Q0J8Q7_ORYSJ Os04g0692200 Os04g0692200 OSNPB_040692200 ENOG411DVQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Cys2/His2-type zinc finger transcription factor (Early heading date 2) (Os10g0419200 protein) B1B534 B1B534_ORYSJ Ehd2 Os10g0419200 RID1 OSNPB_100419200 ENOG411DVQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os07g0571700 protein (Putative organic cation transporter) Q6YTU9 Q6YTU9_ORYSJ Os07g0571700 Os07g0571700 OJ1121_A05.16 OSNPB_070571700 ENOG411DVQ2 PHL5,MPH15.16 Q0WVU3,A0A1P8BBX9 PHL5_ARATH,A0A1P8BBX9_ARATH Myb family transcription factor PHL5 (Protein PHR1-LIKE 5),Myb-like HTH transcriptional regulator family protein 42703,31778 Myb family transcription factor PHL5 (Protein PHR1-LIKE 5),Myb-like HTH transcriptional regulator family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2170199; AT5G06800 Myb-like DNA-binding domain Os04g0665600 protein Q0J995 Q0J995_ORYSJ Os04g0665600 Os04g0665600 OSNPB_040665600 ENOG411DVQT AR791 Q9SAU9 Q9SAU9_ARATH Actin binding protein family (At1g52080/F5F19_14) (F5F19.14 protein) 66292 Actin binding protein family (At1g52080/F5F19_14) (F5F19.14 protein) chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; chloroplast organization [GO:0009658] locus:2034091; AT1G52080 protein CHUP1 chloroplastic-like Os05g0185800 protein (cDNA clone:J013001I17, full insert sequence) Q60EZ9 Q60EZ9_ORYSJ OJ1111_A10.14 Os05g0185800 OsJ_17379 OSNPB_050185800 ENOG411DVQW MBG8.14 Q9FFU3,Q9SZ41,Q9C5K0,A0A1P8BB73 Q9FFU3_ARATH,Q9SZ41_ARATH,Q9C5K0_ARATH,A0A1P8BB73_ARATH Inositol-1,4,5-trisphosphate 5-phosphatase,At4g27020/F10M23_360 (Inositol-1,4,5-trisphosphate 5-phosphatase) (Uncharacterized protein AT4g27020) (Uncharacterized protein F10M23.360),Uncharacterized protein At1g70160 (Zinc finger MYND domain protein) 59735,59682,59135,48610 Inositol-1,4,5-trisphosphate 5-phosphatase,At4g27020/F10M23_360 (Inositol-1,4,5-trisphosphate 5-phosphatase) (Uncharacterized protein AT4g27020) (Uncharacterized protein F10M23.360),Uncharacterized protein At1g70160 (Zinc finger MYND domain protein) vacuole [GO:0005773] locus:2160165;,locus:2116347;,locus:2020553; AT5G54870,AT4G27020,AT1G70160 NA Os01g0793500 protein (cDNA clone:J033024J15, full insert sequence) Q5ZBU1 Q5ZBU1_ORYSJ P0684C02.6-2 Os01g0793500 OsJ_03735 OSNPB_010793500 ENOG411DVQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411DVQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os12g0632600 protein A0A0P0YCR0 A0A0P0YCR0_ORYSJ Os12g0632600 OSNPB_120632600 ENOG411DVQS MBB18.19 Q9FFV8,F4IT40 Q9FFV8_ARATH,F4IT40_ARATH At5g38640 (NagB/RpiA/CoA transferase-like superfamily protein) (Similarity to guanine nucleotide exchange factor) (Uncharacterized protein At5g38640; MBB18.19),NagB/RpiA/CoA transferase-like superfamily protein R-ATH-72731; 69495,37199 At5g38640 (NagB/RpiA/CoA transferase-like superfamily protein) (Similarity to guanine nucleotide exchange factor) (Uncharacterized protein At5g38640; MBB18.19),NagB/RpiA/CoA transferase-like superfamily protein cytoplasm [GO:0005737]; transferase activity [GO:0016740]; cellular metabolic process [GO:0044237] locus:2159868;,locus:2051779; AT5G38640,AT2G44070 translation Initiation Factor Initiation factor 2 subunit family protein, expressed (Os12g0617100 protein),Os03g0645200 protein (Fragment) Q2QM52,Q0DQ10 Q2QM52_ORYSJ,Q0DQ10_ORYSJ LOC_Os12g42260 Os12g0617100 OsJ_36888 OSNPB_120617100,Os03g0645200 Os03g0645200 OSNPB_030645200 ENOG411DVQR Q8GYH1,A0A1P8AS08 Q8GYH1_ARATH,A0A1P8AS08_ARATH Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein),Mitochondrial substrate carrier family protein 40313,34987 Mitochondrial substrate carrier family protein (Putative mitochondrial carrier protein),Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2019657; AT1G74240 Mitochondrial carrier Mitochondrial carrier protein, expressed (Os03g0213800 protein) (cDNA clone:J033119F13, full insert sequence),Os09g0388550 protein Q10Q11,A0A0P0XN31 Q10Q11_ORYSJ,A0A0P0XN31_ORYSJ LOC_Os03g11510 Os03g0213800 OsJ_09903 OSNPB_030213800,Os09g0388550 OSNPB_090388550 ENOG411DVQI OBAP2C,OBAP2B,OBAP2A O04147,Q9C7N3,Q1PE68,Q941A4 CPD_ARATH,OBP2C_ARATH,OBP2B_ARATH,OBP2A_ARATH Cyclic phosphodiesterase (CPDase) (EC 3.1.4.-),Oil body-associated protein 2C,Oil body-associated protein 2B,Oil body-associated protein 2A "FUNCTION: Hydrolyzes ADP-ribose 1"",2""-cyclic phosphate (Appr>1) that is produced during tRNA splicing into ADP-ribose 1""-phosphate (Appr-1""p). Acts also on nucleoside 2',3'-cyclic phosphates." 3.1.4.- 20514,26876,27748,27846 Cyclic phosphodiesterase (CPDase) (EC 3.1.4.-),Oil body-associated protein 2C,Oil body-associated protein 2B,Oil body-associated protein 2A cytoplasm [GO:0005737]; 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [GO:0004113]; cyclic nucleotide metabolic process [GO:0009187]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388] TISSUE SPECIFICITY: Expressed in leaves, stems, roots, floral buds and germinating seeds. {ECO:0000269|PubMed:9148938}. locus:2117099;,locus:2013668;,locus:2117089;,locus:2171968; AT4G18930,AT1G29680,AT4G18920,AT5G45690 Protein of unknown function (DUF1264) Lipoprotein-like (Os01g0749000 protein),Os01g0728700 protein (cDNA clone:002-135-G05, full insert sequence) Q94J20,Q9AX20 Q94J20_ORYSJ,Q9AX20_ORYSJ Os01g0749000 Os01g0749000 OSNPB_010749000 P0481E12.35,Os01g0728700 Os01g0728700 OSNPB_010728700 P0435H01.4 P0456A01.21 ENOG411DVQH HCAR Q8GS60 HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic (EC 1.17.7.2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants accumulate 7-hydroxymethyl chlorophyll a in green leaves. {ECO:0000269|PubMed:21934147}. FUNCTION: Probable iron-sulfur flavoprotein that converts 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin as a reducing equivalent. Catalyzes the reduction of a hydroxymethyl group to a methyl group. Belongs to the chlorophyll catabolic enzymes (CCEs). {ECO:0000269|PubMed:21934147}. ARA:AT1G04620-MONOMER;MetaCyc:AT1G04620-MONOMER; 1.17.7.2 51661 7-hydroxymethyl chlorophyll a reductase, chloroplastic (EC 1.17.7.2) chloroplast [GO:0009507]; 7-hydroxymethyl chlorophyll a reductase activity [GO:0090415]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; chlorophyll cycle [GO:0033354]; chlorophyll metabolic process [GO:0015994] DEVELOPMENTAL STAGE: Constantly expressed throughout development. {ECO:0000269|PubMed:23200839}. locus:2197848; AT1G04620 metal cluster binding 7-hydroxymethyl chlorophyll a reductase, chloroplastic (EC 1.17.7.2),Os04g0320100 protein Q7XTG7,A0A0P0W8S6 HCAR_ORYSJ,A0A0P0W8S6_ORYSJ HCAR Os04g0320100 LOC_Os04g25400 OSJNBa0041M06.1 OSJNBb0026L04.9,Os04g0320100 OSNPB_040320100 FUNCTION: Probable iron-sulfur flavoprotein that converts 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin as a reducing equivalent. Catalyzes the reduction of a hydroxymethyl group to a methyl group. {ECO:0000250|UniProtKB:Q8GS60}. ENOG411DVQK T22N4.1 Q9SRI3 Q9SRI3_ARATH At3g01360 (Plant viral-response family protein (DUF716)) (T22N4.1 protein) (Uncharacterized protein At3g01360) 34763 At3g01360 (Plant viral-response family protein (DUF716)) (T22N4.1 protein) (Uncharacterized protein At3g01360) integral component of membrane [GO:0016021] locus:2100237; AT3G01360 Family of unknown function (DUF716) Os06g0238900 protein (TMV response-related protein-like) (cDNA clone:001-206-G08, full insert sequence) Q67VB3 Q67VB3_ORYSJ Os06g0238900 Os06g0238900 OsJ_20756 OSJNBa0052G07.15 OSJNBa0068B06.24 OSNPB_060238900 ENOG411DVQJ CDF2 Q93ZL5 CDF2_ARATH Cyclic dof factor 2 (Dof zinc finger protein DOF5.2) (AtDOF5.2) DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:19619493}. FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. 49808 Cyclic dof factor 2 (Dof zinc finger protein DOF5.2) (AtDOF5.2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. locus:2164860; AT5G39660 dof zinc finger protein Os01g0264000 protein (Fragment) A0A0P0V0N4 A0A0P0V0N4_ORYSJ Os01g0264000 OSNPB_010264000 ENOG411DVQE OLI2 Q8VYM6,Q9FG73,A0A1P8B490,A0A1P8B469,A0A1P8B458,A0A1P8B455,A0A1P8B472,A0A1P8B451,F4JP83,F4JP84 Q8VYM6_ARATH,Q9FG73_ARATH,A0A1P8B490_ARATH,A0A1P8B469_ARATH,A0A1P8B458_ARATH,A0A1P8B455_ARATH,A0A1P8B472_ARATH,A0A1P8B451_ARATH,F4JP83_ARATH,F4JP84_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At4g26600),Nucleolar protein-like (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein,NOL1/NOP2/sun family protein Cell number in first leaves decreased to <20% of the wild type level and cell size increased to more than 2.5-fold the wild type size.,Palisade mesophyll cells are reduced in number but apparently normal in size. Plants have pointed leaves and increased air spaces in the palisade mesophyll.,Shorter primary roots with respect to the wild type.,Decrease in cell number of 30-60% with respect to the wild type in the first leaves. Palisade cells are 1.5 to 2-fold larger in size than wild type. Leaf area is slightly reduced compared to parental single mutants. ARA:GQT-2168-MONOMER;,ARA:GQT-1780-MONOMER; 75543,76776,60523,61937,73235,79276,65670,56790,20929,22584 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At4g26600),Nucleolar protein-like (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein,NOL1/NOP2/sun family protein nucleolus [GO:0005730]; RNA binding [GO:0003723]; rRNA (cytosine-C5-)-methyltransferase activity [GO:0009383]; maturation of LSU-rRNA [GO:0000470]; rRNA base methylation [GO:0070475],cytosol [GO:0005829]; nucleolus [GO:0005730]; RNA binding [GO:0003723]; rRNA (cytosine-C5-)-methyltransferase activity [GO:0009383]; cell proliferation [GO:0008283]; leaf morphogenesis [GO:0009965]; maturation of LSU-rRNA [GO:0000470]; root morphogenesis [GO:0010015]; rRNA base methylation [GO:0070475],RNA binding [GO:0003723]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; rRNA processing [GO:0006364],methyltransferase activity [GO:0008168],nucleolus [GO:0005730]; rRNA (cytosine-C5-)-methyltransferase activity [GO:0009383]; maturation of LSU-rRNA [GO:0000470]; rRNA base methylation [GO:0070475] locus:2133832;,locus:2178393;,locus:2129291; AT4G26600,AT5G55920,AT4G17590 ribosomal RNA methyltransferase Os09g0551300 protein (Putative nucleolar protein),Os02g0724600 protein,Os09g0551300 protein (Fragment) Q69MP1,A0A0P0VP26,A0A0P0XR57 Q69MP1_ORYSJ,A0A0P0VP26_ORYSJ,A0A0P0XR57_ORYSJ Os09g0551300 OSNPB_090551300 P0489D11.25,Os02g0724600 OSNPB_020724600,Os09g0551300 OSNPB_090551300 ENOG411DVQG NPGR2 Q66GN3,A0A1P8B6U4 NPGR2_ARATH,A0A1P8B6U4_ARATH Protein NPGR2 (NO POLLEN GERMINATION RELATED 2),No pollen germination related 2 82733,83338 Protein NPGR2 (NO POLLEN GERMINATION RELATED 2),No pollen germination related 2 plasma membrane [GO:0005886]; calmodulin binding [GO:0005516] TISSUE SPECIFICITY: Expressed in pollen, flowers and fruits. {ECO:0000269|PubMed:12928497}. locus:2139860; AT4G28600 Tetratricopeptide repeat protein Os10g0471400 protein (TPR Domain containing protein, expressed) Q337L2 Q337L2_ORYSJ Os10g0471400 LOC_Os10g33290 Os10g0471400 OsJ_31862 OSNPB_100471400 ENOG411DVQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os06g0164500 protein A0A0P0WT38 A0A0P0WT38_ORYSJ Os06g0164500 OSNPB_060164500 ENOG411DVQC O82307,O82199 C3H23_ARATH,C3H20_ARATH Zinc finger CCCH domain-containing protein 23 (AtC3H23) (Protein ATCTH),Zinc finger CCCH domain-containing protein 20 (AtC3H20) atozf1 mutants are more sensitive to oxidative stress (various concentration of H2O2). In the presence of H2O2 MDA (malondialdehyde) content in atozf1 is significantly higher than that in WT. atozf1 mutants display lower activities of catalase and guaiacol peroxidase higher chlorosis and down-regulated expression of antioxidant genes under oxidative stress. Under normal condition atozf1 mutant exhibit similar phenotype with WT. Sensitive to oxidative stress-C. Kim-2010 35465,39845 Zinc finger CCCH domain-containing protein 23 (AtC3H23) (Protein ATCTH),Zinc finger CCCH domain-containing protein 20 (AtC3H20) cytoplasm [GO:0005737]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; single-stranded RNA binding [GO:0003727]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; mRNA destabilization [GO:0061157]; regulation of transcription, DNA-templated [GO:0006355],plasma membrane [GO:0005886]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to oxidative stress [GO:0006979] locus:2043565;,locus:2052005; AT2G25900,AT2G19810 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 2 (OsC3H2) (Protein DELAY OF THE ONSET OF SENESCENCE) (OsDOS),Zinc finger CCCH domain-containing protein 35 (OsC3H35) (Protein DELAY OF THE ONSET OF SENESCENCE-like),Os01g0192000 protein (Fragment),Os07g0574900 protein (Fragment) Q9FU27,Q6L4N4,A0A0P0UZF9,A0A0P0X7P7 C3H2_ORYSJ,C3H35_ORYSJ,A0A0P0UZF9_ORYSJ,A0A0P0X7P7_ORYSJ Os01g0192000 LOC_Os01g09620 P0671B11.13,Os05g0195200 LOC_Os05g10670 P0473H02.8,Os01g0192000 OSNPB_010192000,Os07g0574900 OSNPB_070574900 FUNCTION: Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. ENOG411EH4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Urb2/Npa2 family NA NA NA NA NA NA NA ENOG411DYU2 Q1JPM3 Q1JPM3_ARATH At1g77250 (RING/FYVE/PHD-type zinc finger family protein) 58382 At1g77250 (RING/FYVE/PHD-type zinc finger family protein) metal ion binding [GO:0046872] locus:2195945; AT1G77250 PHD-finger PHD finger protein EHD3 (Proetin EARLY HEADING 3),Os08g0105000 protein (Fragment) Q6ZJM9,A0A0P0XB52 EHD3_ORYSJ,A0A0P0XB52_ORYSJ EHD3 Os08g0105000 LOC_Os08g01420 OJ1300_E01.8-1,Os08g0105000 OSNPB_080105000 DISRUPTION PHENOTYPE: Late-flowering phenotype under short day (SD) and natural day (ND) conditions. Extreme late-flowering phenotype under long day (LD) conditions. {ECO:0000269|PubMed:21284756}. FUNCTION: Probable transcription factor involved in the regulation of floral induction under long day (LD) conditions. Promotes photoperiodic flowering by repressing GHD7, a major floral repressor. Seems to function independently of HD1. {ECO:0000269|PubMed:21284756}. ENOG411DYU8 T6C23.19 Q9S7U2,A0A1P8AWD6,A0A1P8AWB9 Q9S7U2_ARATH,A0A1P8AWD6_ARATH,A0A1P8AWB9_ARATH Uncharacterized protein F24J1.24 (Uncharacterized protein T6C23.19) (Zinc finger FYVE domain protein, putative (DUF1666)),Zinc finger FYVE domain protein, putative (DUF1666) 74325,74456,69301 Uncharacterized protein F24J1.24 (Uncharacterized protein T6C23.19) (Zinc finger FYVE domain protein, putative (DUF1666)),Zinc finger FYVE domain protein, putative (DUF1666) cytosolic large ribosomal subunit [GO:0022625]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2026729; AT1G69610 Protein of unknown function (DUF1666) NA NA NA NA NA NA NA ENOG411DYU9 F21O3.2 Q9S7A6,A0A1I9LQH8 Q9S7A6_ARATH,A0A1I9LQH8_ARATH F21O3.2 protein (Phosphoserine aminotransferase, putative (DUF760)) (T1B9.2 protein) (Uncharacterized protein At3g07310) (Uncharacterized protein F21O3.2),Phosphoserine aminotransferase, putative (DUF760) 41368,30341 F21O3.2 protein (Phosphoserine aminotransferase, putative (DUF760)) (T1B9.2 protein) (Uncharacterized protein At3g07310) (Uncharacterized protein F21O3.2),Phosphoserine aminotransferase, putative (DUF760) transaminase activity [GO:0008483] locus:2079626; AT3G07310 Protein of unknown function (DUF760) Os11g0456100 protein (Fragment) A0A0P0Y2F2 A0A0P0Y2F2_ORYSJ Os11g0456100 OSNPB_110456100 ENOG411DYUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CDC48_2 Os08g0413000 protein A0A0P0XFK3 A0A0P0XFK3_ORYSJ Os08g0413000 OSNPB_080413000 ENOG411DYUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Saposin-like type B region 1 Os05g0334400 protein (Os05g0335100 protein) Q5KQF4 Q5KQF4_ORYSJ Os05g0334400 Os05g0335100 OsJ_18103 OSJNBa0049D13.6 OSNPB_050334400 ENOG411EGUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411E6WF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0217700 protein (cDNA clone:001-105-B04, full insert sequence) Q69QC1 Q69QC1_ORYSJ Os06g0217700 OSNPB_060217700 P0644A02.3 ENOG411E6WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CASP-like protein CASP-like protein UU-1 (OsCASPLUU-1) Q6Z1G3 CSPL3_ORYSJ Os08g0536200 LOC_Os08g42430 OSJNBa0033D24.32 P0665C04.13 ENOG411E6WH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os07g0244800 protein A0A0N7KN71 A0A0N7KN71_ORYSJ Os07g0244800 OSNPB_070244800 ENOG411E6WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NBS-LRR disease resistance protein-like (Os02g0597200 protein) (cDNA clone:J013000L09, full insert sequence) Q6K906 Q6K906_ORYSJ Os02g0597200 OJ1568_B05.21 OSNPB_020597200 ENOG411E6WK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E6WT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0179100 protein (Fragment) A0A0P0WT39 A0A0P0WT39_ORYSJ Os06g0179100 OSNPB_060179100 ENOG411E6WV F4I8C2 F4I8C2_ARATH COMPLEX 1 LYR-like protein 10325 COMPLEX 1 LYR-like protein locus:4515102717; AT1G65032 Inherit from KOG: Ring finger protein NA NA NA NA NA NA NA ENOG411E6WW P93318 M660_ARATH Uncharacterized mitochondrial protein AtMg00660 (ORF149) 16699 Uncharacterized mitochondrial protein AtMg00660 (ORF149) mitochondrion [GO:0005739] locus:504954549; ATMG00660 NA NA NA NA NA NA NA NA ENOG411E6WP A0A1P8BFF1,Q67XT3,A0A1P8BFI7,A0A1P8BFI9,F4K9F4 A0A1P8BFF1_ARATH,Q67XT3_ARATH,A0A1P8BFI7_ARATH,A0A1P8BFI9_ARATH,F4K9F4_ARATH Plectin-like protein,Plectin-like protein (Uncharacterized protein At3g08880) FUNCTION: Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division. Required for the maintenance of plant architecture. {ECO:0000269|PubMed:29356153}. 23653,23332,23506,19313,24765 Plectin-like protein,Plectin-like protein (Uncharacterized protein At3g08880) locus:2097603;,locus:2149825; AT3G08880,AT5G01570 NA NA NA NA NA NA NA NA ENOG411E6WR Q9LQ71 Q9LQ71_ARATH AP2-like ethylene-responsive transcription factor SNZ (At1g01840/T1N6_19) (T1N6.26) 16942 AP2-like ethylene-responsive transcription factor SNZ (At1g01840/T1N6_19) (T1N6.26) locus:2198170; AT1G01840 NA NA NA NA NA NA NA NA ENOG411E6WZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger Os01g0673700 protein A0A0N7KDH5 A0A0N7KDH5_ORYSJ Os01g0673700 OSNPB_010673700 ENOG411E6W4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E6W5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0536100 protein (cDNA clone:002-134-H05, full insert sequence) Q6EU61 Q6EU61_ORYSJ Os02g0536100 OJ1112_G07.27 OSNPB_020536100 ENOG411E6W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: NUF2 NDC80 kinetochore complex component homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411E6W7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: finger protein NA NA NA NA NA NA NA ENOG411E6W1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os12g0407600 protein,Os11g0189475 protein A0A0P0Y9A8,A0A0P0XZH0 A0A0P0Y9A8_ORYSJ,A0A0P0XZH0_ORYSJ Os12g0407600 OSNPB_120407600,Os11g0189475 OSNPB_110189475 ENOG411E6W2 F4HPX2,A0A1P8ANR1,F4HPX1,F4HPX0,F4HPW9 F4HPX2_ARATH,A0A1P8ANR1_ARATH,F4HPX1_ARATH,F4HPX0_ARATH,F4HPW9_ARATH Stress response protein 38776,29071,38647,33898,33798 Stress response protein nucleic acid binding [GO:0003676] locus:2036509; AT1G60640 NA Os01g0505700 protein (Fragment) A0A0P0V3D8 A0A0P0V3D8_ORYSJ Os01g0505700 OSNPB_010505700 ENOG411E6W3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0700000 protein (cDNA clone:001-206-B10, full insert sequence) (cDNA clone:006-310-F01, full insert sequence) (cDNA clone:J023119M09, full insert sequence) Q5N8I8 Q5N8I8_ORYSJ Os01g0700000 Os01g0700000 OsJ_03145 OSNPB_010700000 P0047E11.2 P0454A11.21 ENOG411E6W8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain B3 domain-containing protein Os06g0112300 Q9LHY9 Y6112_ORYSJ Os06g0112300 LOC_Os06g02230 OsJ_19871 P0029D06.25 ENOG411EIVI Q9LW52,A0A1I9LMI8,A0A1I9LMI7,F4JUP8 Q9LW52_ARATH,A0A1I9LMI8_ARATH,A0A1I9LMI7_ARATH,F4JUP8_ARATH Transmembrane protein 34865,33358,34111,12380 Transmembrane protein integral component of membrane [GO:0016021]; mRNA binding [GO:0003729],integral component of membrane [GO:0016021] locus:2090905;,locus:4515103393; AT3G23450,AT4G14301 NA NA NA NA NA NA NA NA ENOG411E8I2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os08g0451300 protein A0A0P0XGC3 A0A0P0XGC3_ORYSJ Os08g0451300 OSNPB_080451300 ENOG411E8I8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8I9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family Os02g0172300 protein,Os01g0932700 protein (Os01g0932825 protein) Q6H6Z3,C7IX29 Q6H6Z3_ORYSJ,C7IX29_ORYSJ P0030G02.49 Os02g0172300 OSNPB_020172300,Os01g0932700 Os01g0932825 OSNPB_010932700 ENOG411E8IP Q1PDN7 Q1PDN7_ARATH Transmembrane protein 13344 Transmembrane protein integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:504954920; AT5G42785 NA NA NA NA NA NA NA NA ENOG411E8IY Q8LC94 Q8LC94_ARATH Uncharacterized protein 9765 Uncharacterized protein locus:505006516; AT4G23493 NA NA NA NA NA NA NA NA ENOG411E8IA F4P12_370 Q9LFF4 Q9LFF4_ARATH Uncharacterized protein At3g53670; F4P12.370 (Uncharacterized protein F4P12.370) (Uncharacterized protein F4P12_370) 21934 Uncharacterized protein At3g53670; F4P12.370 (Uncharacterized protein F4P12.370) (Uncharacterized protein F4P12_370) locus:2084106; AT3G53670 NA NA NA NA NA NA NA NA ENOG411E8IM Q9LK60 Q9LK60_ARATH Transmembrane protein 23160 Transmembrane protein integral component of membrane [GO:0016021] locus:2089994; AT3G13130 NA NA NA NA NA NA NA NA ENOG411E8IN MPA22.10 Q9FGI2 Q9FGI2_ARATH At5g37550 26246 At5g37550 locus:2169891; AT5G37550 NA NA NA NA NA NA NA NA ENOG411ECW9 MDP40 Q93ZG1,O49310 Q93ZG1_ARATH,O49310_ARATH At1g23060/T26J12_16,T26J12.16 protein 41005,34067 At1g23060/T26J12_16,T26J12.16 protein locus:2201240; AT1G23060 NA NA NA NA NA NA NA NA ENOG411ECW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411ECW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411ECW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411ECW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ECW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ECW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os02g0229400 protein (Putative hexose transporter) (Tonoplast monosaccharide transporter 2),Os02g0229400 protein (Fragment) Q6H536,A0A0P0VGR3 Q6H536_ORYSJ,A0A0P0VGR3_ORYSJ Os02g0229400 Os02g0229400 OSJNBb0035N08.17 OSNPB_020229400,Os02g0229400 OSNPB_020229400 ENOG411ECW6 IPT7 Q94ID1 IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial (AtIPT7) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 7) (Cytokinin synthase 7) DISRUPTION PHENOTYPE: No visible phenotype, due the redundancy with other IPTs. {ECO:0000269|PubMed:17062755}. No visible phenotype.,Decreased levels of isopentenyladenosine riboside (iPR) and isopentenyladenosine monophosphate (iPRMP) compared to wild type.,Decreases in free-base iP and tZ are moderate compared to those of the riboside and ribotide forms.,External application of trans-zeatin partially rescues the growth of aerial parts of the mutant and reduced its lateral root elongation.,Fewer rosette leaves than wild type indicating a prolonged plastochron.,Flowering time is delayed when grown on vermiculite but not on nutrient agar.,Increased levels of cis-zeatin riboside (cZR) and cis-zeatin riboside monophosphate (cZRMP) compared to wild type.,Indistinguishable from wild type in the early stages of development. Phenotypic differences become evident as the plant age.,Levels of iPRMP iPR tZRMP tZR. tZ-7-glucoside tZ-9-glucoside and tZ-O-glucoside are all reduced to less than 20% of those of wild type.,Rduced shoot apical meristem size and thin inflorescence stems.,Reduced cambial activity and reduced secondary growth in both shoots and roots.,Relative to wild type both the number of lateral roots (longer than 1cm) and the total length of the lateral roots are increased.,Short and thin aerial parts.,Some seeds are aborted but surviving ones are larger than those of wild type.,Thin small plants.,Enhanced root growth rate resulting in longer roots.,Mutant root meristems showed an increased number of meristematic cells already at two days after germination (dpg) and accumulated cells also after five dpg vastly exceeding the fixed number of cells of wild-type meristems. FUNCTION: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP. {ECO:0000269|PubMed:11313355, ECO:0000269|PubMed:15998742, ECO:0000269|PubMed:17062755}. ARA:AT3G23630-MONOMER;MetaCyc:AT3G23630-MONOMER; 2.5.1.112; 2.5.1.112 36980 Adenylate isopentenyltransferase 7, mitochondrial (AtIPT7) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 7) (Cytokinin synthase 7) mitochondrion [GO:0005739]; ADP dimethylallyltransferase activity [GO:0052623]; AMP dimethylallyltransferase activity [GO:0009824]; ATP binding [GO:0005524]; ATP dimethylallyltransferase activity [GO:0052622]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; pollen tube growth [GO:0009860]; tRNA modification [GO:0006400] TISSUE SPECIFICITY: Expressed in both the vascular stele and the phloem companion cells of the root, in endodermis of the root elongation zone, trichomes on young leaves, and some pollen tubes. {ECO:0000269|PubMed:14675438, ECO:0000269|PubMed:15356331}. locus:2088025; AT3G23630 Isopentenyl transferase NA NA NA NA NA NA NA ENOG411ECWQ XTH19,XTH17,XTH20,XTH18 Q9M0D1,O80803,Q9FI31,Q9M0D2,A0A1P8AQT8 XTH19_ARATH,XTH17_ARATH,XTH20_ARATH,XTH18_ARATH,A0A1P8AQT8_ARATH Xyloglucan endotransglucosylase/hydrolase protein 19 (At-XTH19) (XTH-19) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 17 (At-XTH17) (XTH-17) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 20 (At-XTH20) (XTH-20) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 18 (At-XTH18) (XTH-18) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Short petioles under green shadelight and low red:far-red light-R. Pierik-2010 FUNCTION: Possesses xyloglucan endotransglucosylase (XET) activity in vitro. Does not possess xyloglucan endohydrolysis (XEH) activity (PubMed:20732879). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (PubMed:23585673). Involved in cell proliferation in the tissue reunion process of wounded inflorescence stems. Maybe a downstream target of NAC071 as a consequence of auxin action in wounded stems (PubMed:25182467). {ECO:0000269|PubMed:20732879, ECO:0000269|PubMed:25182467, ECO:0000305|PubMed:23585673}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000269|PubMed:24948835}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) (By similarity). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (PubMed:23585673). Involved in cell proliferation in the tissue reunion process of wounded inflorescence stems. Maybe a downstream target of NAC071 as a consequence of auxin action in wounded stems (PubMed:25182467). {ECO:0000250|UniProtKB:Q9M0D1, ECO:0000269|PubMed:25182467, ECO:0000305|PubMed:23585673}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. MISCELLANEOUS: Knockdown mutants have shorter roots, decreased cell wall xyloglucan content and increased aluminum resistance. {ECO:0000269|PubMed:24948835}. ARA:AT4G30290-MONOMER;,ARA:AT1G65310-MONOMER;,ARA:AT5G48070-MONOMER;,ARA:AT4G30280-MONOMER; 2.4.1.207; 2.4.1.207 31563,31992,32437,32072,34626 Xyloglucan endotransglucosylase/hydrolase protein 19 (At-XTH19) (XTH-19) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 17 (At-XTH17) (XTH-17) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 20 (At-XTH20) (XTH-20) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 18 (At-XTH18) (XTH-18) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell proliferation [GO:0008283]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; cellular response to auxin stimulus [GO:0071365]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Root specific. {ECO:0000269|PubMed:11673616}.,TISSUE SPECIFICITY: Root specific (PubMed:11673616). Expressed in all cell types in the elongating and differentiating region of the root (PubMed:15659443). {ECO:0000269|PubMed:11673616, ECO:0000269|PubMed:15659443}. locus:2118751;,locus:2206335;,locus:2162652;,locus:2118746; AT4G30290,AT1G65310,AT5G48070,AT4G30280 xyloglucan xyloglucosyl transferase NA NA NA NA NA NA NA ENOG411ECWP PUP22,PUP8,PUP7 Q8RY74,Q0WRB9,Q2V3H2 PUP22_ARATH,PUP8_ARATH,PUP7_ARATH Probable purine permease 22 (AtPUP22),Probable purine permease 8 (AtPUP8),Probable purine permease 7 (AtPUP7) (Peroxisomal biogenesis protein 17) 41787,43537,42805 Probable purine permease 22 (AtPUP22),Probable purine permease 8 (AtPUP8),Probable purine permease 7 (AtPUP7) (Peroxisomal biogenesis protein 17) integral component of membrane [GO:0016021]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863] locus:1009023365;,locus:1009023376;,locus:1009023346; AT4G18205,AT4G18195,AT4G18197 Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411ECWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sterol methyltransferase C-terminal NA NA NA NA NA NA NA ENOG411ECWI CIPK22 O80902 CIPKM_ARATH CBL-interacting serine/threonine-protein kinase 22 (EC 2.7.11.1) (SNF1-related kinase 3.19) (SOS2-like protein kinase PKS14) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 48680 CBL-interacting serine/threonine-protein kinase 22 (EC 2.7.11.1) (SNF1-related kinase 3.19) (SOS2-like protein kinase PKS14) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] AT2G38490 CBL-interacting protein kinase 22 NA NA NA NA NA NA NA ENOG411ECWK AGL27,AGL70,AGL31,MAF5,MAF3,MAF4,MAF2,MAF1 Q9AT76,Q9LSR7,Q9FPN7,Q683D7,Q84NB4,Q84NB2,Q9LSR6,A8MRI3,A0A1P8BGG4,A0A1P8BFZ7,A0A1P8ARA3,A0A1P8BG03,A0A1P8BGI9,A0A1P8BGD0,A0A1P8ARE3,A0A1P8ARA2,A0A1P8ARB5,A0A1P8ARC3,A0A1P8BAY7,A0A1P8ARA1,A0A1P8ARA9,F4KGH9 AGL27_ARATH,AGL70_ARATH,AGL31_ARATH,MAF5_ARATH,Q84NB4_ARATH,Q84NB2_ARATH,Q9LSR6_ARATH,A8MRI3_ARATH,A0A1P8BGG4_ARATH,A0A1P8BFZ7_ARATH,A0A1P8ARA3_ARATH,A0A1P8BG03_ARATH,A0A1P8BGI9_ARATH,A0A1P8BGD0_ARATH,A0A1P8ARE3_ARATH,A0A1P8ARA2_ARATH,A0A1P8ARB5_ARATH,A0A1P8ARC3_ARATH,A0A1P8BAY7_ARATH,A0A1P8ARA1_ARATH,A0A1P8ARA9_ARATH,F4KGH9_ARATH Agamous-like MADS-box protein AGL27 (MADS box FLC1-like nuclear protein) (Protein FLOWERING LOCUS M) (Protein MADS AFFECTING FLOWERING 1),Agamous-like MADS-box protein AGL70 (MADS box FLC1-like nuclear protein 3) (Protein AGAMOUS-like 70) (Protein MADS AFFECTING FLOWERING 3),Agamous-like MADS-box protein AGL31 (Protein MADS AFFECTING FLOWERING 2),Protein MADS AFFECTING FLOWERING 5 (MADS box protein FCL1) (MADS-box protein AGAMOUS-LIKE 68),At5g65060 (K-box region and MADS-box transcription factor family protein) (MADS affecting flowering 3 variant II),K-box region and MADS-box transcription factor family protein (MADS affecting flowering 4 variant I) (MAF4),K-box region and MADS-box transcription factor family protein (MADS box transcription factor-like),AGAMOUS-like 31 (MAF2),K-box region and MADS-box transcription factor family protein,AGAMOUS-like 31,K-box region/MADS-box transcription factor family protein DISRUPTION PHENOTYPE: Suppress the late-flowering phenotype of photoperiod-pathway mutants. Affects natural variation in flowering behavior in both long and short days. {ECO:0000269|PubMed:14558654, ECO:0000269|PubMed:15695584, ECO:0000269|PubMed:18799658}.,DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:20551443}. Dwarf; Early flowering; Heterozygotes: Early flowering-R. Amasino-2001,Abnormal vernalization response-J. Riechmann-2003 FUNCTION: Probable transcription factor involved in the negative regulation of flowering time in both long and short days, probably through the photoperiodic and vernalization pathways. Prevents premature flowering. {ECO:0000269|PubMed:11351076, ECO:0000269|PubMed:14558654, ECO:0000269|PubMed:15695584, ECO:0000269|PubMed:18799658}.,FUNCTION: Probable transcription factor involved in the negative regulation of flowering time, probably through the photoperiodic and vernalization pathways; more efficient in cv. Landsberg erecta than in cv. Columbia background. Prevents premature flowering (PubMed:12724541, PubMed:25339407). Involved in the modulation of vernalization impact on flowering according to genotype acclimation to altitude (PubMed:25339407). {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:25339407}.,FUNCTION: Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}.,FUNCTION: Transcription factor involved in the negative regulation of flowering time in short days, probably through the photoperiodic and vernalization pathways. Prevents premature flowering, particularly in the cv. Landsberg erecta background. In non-inductive photoperiods (e.g. short days), required for flowering through VIL2-mediated maintenance of the epigenetically repressed state of MAF5 via H3K9me2 and plant homeodomain / polycomb repressive complex 2 (PHD-PRC2)-dependent H3K27me3. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:18798874, ECO:0000269|PubMed:18852898, ECO:0000269|PubMed:20837520, ECO:0000269|PubMed:21150261, ECO:0000269|PubMed:21175890, ECO:0000269|PubMed:21398257, ECO:0000269|PubMed:22378382}. MISCELLANEOUS: The early flowering of cv. Nd-1 (especially in short days) is due to a deletion of AGL27. This deletion is associated with the QTL 'FLOWERING 1' (FLW1) (PubMed:15695584). {ECO:0000305|PubMed:15695584}.,MISCELLANEOUS: Complex rearrangements within the MAF2-5 gene cluster plays a role in the variation of the flowering time, an ecologically important variable phenotype. 22119,22129,22061,22343,20914,22853,26406,20435,16754,20874,25273,16552,23861,17133,19952,19373,14052,17206,21538,16219,16840,26493 Agamous-like MADS-box protein AGL27 (MADS box FLC1-like nuclear protein) (Protein FLOWERING LOCUS M) (Protein MADS AFFECTING FLOWERING 1),Agamous-like MADS-box protein AGL70 (MADS box FLC1-like nuclear protein 3) (Protein AGAMOUS-like 70) (Protein MADS AFFECTING FLOWERING 3),Agamous-like MADS-box protein AGL31 (Protein MADS AFFECTING FLOWERING 2),Protein MADS AFFECTING FLOWERING 5 (MADS box protein FCL1) (MADS-box protein AGAMOUS-LIKE 68),At5g65060 (K-box region and MADS-box transcription factor family protein) (MADS affecting flowering 3 variant II),K-box region and MADS-box transcription factor family protein (MADS affecting flowering 4 variant I) (MAF4),K-box region and MADS-box transcription factor family protein (MADS box transcription factor-like),AGAMOUS-like 31 (MAF2),K-box region and MADS-box transcription factor family protein,AGAMOUS-like 31,K-box region/MADS-box transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; photoperiodism, flowering [GO:0048573]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of flower development [GO:0009910]; regulation of photoperiodism, flowering [GO:2000028]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; negative regulation of vernalization response [GO:0010221]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; regulation of photoperiodism, flowering [GO:2000028]; regulation of short-day photoperiodism, flowering [GO:0048587]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700],nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of flower development [GO:0009910]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in most plant tissues, embryo, seedlings, roots, leaves, stems, inflorescence, pollen, siliques and flowers. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:11351076, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148}.,TISSUE SPECIFICITY: Mostly expressed in roots, leaves and flowers, and, to a lower extent, in inflorescence, siliques, pollen and shoots. {ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148}.,TISSUE SPECIFICITY: Expressed in most plant tissues, roots, seedlings, leaves, stems, inflorescences, pollen, siliques and flowers. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148}. locus:2025282;,locus:2144345;,locus:2177749;,locus:2144355;,locus:2144350; AT1G77080,AT5G65060,AT5G65050,AT5G65080,AT5G65070 MADS affecting flowering NA NA NA NA NA NA NA ENOG411ECWJ NADP-ME3,NADP-ME2 Q9XGZ0,Q9LYG3,A0A1P8BDG6,A0A1P8BDF1 MAOP3_ARATH,MAOP2_ARATH,A0A1P8BDG6_ARATH,A0A1P8BDF1_ARATH NADP-dependent malic enzyme 3 (AtNADP-ME3) (NADP-malic enzyme 3) (EC 1.1.1.40),NADP-dependent malic enzyme 2 (AtNADP-ME2) (NADP-malic enzyme 2) (EC 1.1.1.40),Malic enzyme ARA:AT5G25880-MONOMER;,ARA:AT5G11670-MONOMER; 1.1.1.40; 1.1.1.40 64610,64413,61341,58775 NADP-dependent malic enzyme 3 (AtNADP-ME3) (NADP-malic enzyme 3) (EC 1.1.1.40),NADP-dependent malic enzyme 2 (AtNADP-ME2) (NADP-malic enzyme 2) (EC 1.1.1.40),Malic enzyme chloroplast [GO:0009507]; cytosol [GO:0005829]; malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; malate dehydrogenase (decarboxylating) (NADP+) activity [GO:0004473]; metal ion binding [GO:0046872]; NAD binding [GO:0051287]; oxaloacetate decarboxylase activity [GO:0008948]; malate metabolic process [GO:0006108]; protein homooligomerization [GO:0051260]; pyruvate metabolic process [GO:0006090],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; malate dehydrogenase (decarboxylating) (NADP+) activity [GO:0004473]; metal ion binding [GO:0046872]; NAD binding [GO:0051287]; oxaloacetate decarboxylase activity [GO:0008948]; malate metabolic process [GO:0006108]; pentose-phosphate shunt, oxidative branch [GO:0009051]; protein homooligomerization [GO:0051260]; pyruvate metabolic process [GO:0006090]; response to cadmium ion [GO:0046686],malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; metal ion binding [GO:0046872]; NAD binding [GO:0051287] DEVELOPMENTAL STAGE: During embryogenesis, present in the embryo at the globular and heart stages. Detected in the central vasculature of the siliques. During germination, only observed in stipules at the shoot apex and restricted to trichomes of the primary leaves. {ECO:0000269|PubMed:16113210}.,DEVELOPMENTAL STAGE: During embryogenesis, present in the embryo at the globular and heart stages. Detected in the funiculus and vascular tissues of the siliques. During germination, restricted to the proximal part of the radicle having root hairs to later expands toward the meristematic region, except for the root tip. Strongly expressed in hypocotyls and cotyledons 6 days after imbibition. Present in primary leaves. In developed flowers expressed in sepals and filaments. In developing siliques, present at both ends, the stigmatic papillae and the abscission zone. {ECO:0000269|PubMed:16113210}. TISSUE SPECIFICITY: Pollen (at protein level). Mostly expressed in flowers, and, to a lower extent, in stems. In leaves and stems, restricted to the trichomes and trichome basal cells. Also present in the stipules flanking the base of the inflorescence bract leaves and in the meristematic zone of developing lateral roots. In flowers, present in pollen and the abscission zone of developing siliques. {ECO:0000269|PubMed:16113210, ECO:0000269|PubMed:16242667, ECO:0000269|PubMed:16247729}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and roots. Particularly present in vasculatures, trichome basal cells and hydatodes. {ECO:0000269|PubMed:16113210}. locus:2180547;,locus:2181980; AT5G25880,AT5G11670 NADP-malic enzyme 2 NA NA NA NA NA NA NA ENOG411ECWM Q3EAE0 Q3EAE0_ARATH NC domain-containing protein-like protein 28381 NC domain-containing protein-like protein locus:504955372; AT4G00905 Pfam:NC NA NA NA NA NA NA NA ENOG411ECWN ERF016 Q9C591 ERF16_ARATH Ethylene-responsive transcription factor ERF016 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 24400 Ethylene-responsive transcription factor ERF016 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:504956445; AT5G21960 AP2 NA NA NA NA NA NA NA ENOG411ECWA Q3ECX9,Q3E7I8 Q3ECX9_ARATH,Q3E7I8_ARATH Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (NLI interacting factor family protein),At1g43600 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) R-ATH-113418;R-ATH-674695;R-ATH-6796648; 30249,26194 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (NLI interacting factor family protein),At1g43600 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; CTD phosphatase activity [GO:0008420]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940] locus:2194666;,locus:2194656; AT1G43610,AT1G43600 NLI interacting factor (NIF) family protein NA NA NA NA NA NA NA ENOG411ECWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411ECWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411ECWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) Os05g0108400 protein Q65X22 Q65X22_ORYSJ Os05g0108400 OSJNBa0068N01.13 OSNPB_050108400 ENOG411DQTW ASD2,ASD1 Q8VZR2,Q9SG80,A0A1I9LPN8 ASD2_ARATH,ASD1_ARATH,A0A1I9LPN8_ARATH Alpha-L-arabinofuranosidase 2 (AtASD2) (EC 3.2.1.55) (Beta-D-xylosidase) (EC 3.2.1.-),Alpha-L-arabinofuranosidase 1 (AtASD1) (EC 3.2.1.55) (Beta-D-xylosidase) (EC 3.2.1.-),Alpha-L-arabinofuranosidase 1 DISRUPTION PHENOTYPE: No visible phenotype, even in asd1 and asd2 double mutant. {ECO:0000269|PubMed:18344421}.,DISRUPTION PHENOTYPE: No visible phenotype; even in asd1 and asd2 double mutant. {ECO:0000269|PubMed:18344421}. FUNCTION: May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels. {ECO:0000269|PubMed:18344421}.,FUNCTION: May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels. Prefers arabinoxylan, but may also use pectic arabinans as substrates. {ECO:0000269|PubMed:15181203, ECO:0000269|PubMed:16798843, ECO:0000269|PubMed:18344421}. ARA:AT5G26120-MONOMER;,ARA:AT3G10740-MONOMER; 3.2.1.55; 3.2.1.- 75439,75045,77330 Alpha-L-arabinofuranosidase 2 (AtASD2) (EC 3.2.1.55) (Beta-D-xylosidase) (EC 3.2.1.-),Alpha-L-arabinofuranosidase 1 (AtASD1) (EC 3.2.1.55) (Beta-D-xylosidase) (EC 3.2.1.-),Alpha-L-arabinofuranosidase 1 plant-type cell wall [GO:0009505]; proteinaceous extracellular matrix [GO:0005578]; alpha-L-arabinofuranosidase activity [GO:0046556]; L-arabinose metabolic process [GO:0046373],apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; proteinaceous extracellular matrix [GO:0005578]; vacuole [GO:0005773]; alpha-L-arabinofuranosidase activity [GO:0046556]; xylan 1,4-beta-xylosidase activity [GO:0009044]; L-arabinose metabolic process [GO:0046373]; xylan catabolic process [GO:0045493],alpha-L-arabinofuranosidase activity [GO:0046556]; L-arabinose metabolic process [GO:0046373] TISSUE SPECIFICITY: High expression in flowers, siliques and stems. Observed in the vasculature of older root tissue, at the tip of anthers and in the petal blade of fully developed flowers, in floral abscission zones and in silique replum tissue. Expressed in the cambium and phloem, but not in the xylem or in the vascular system of floral tissues. {ECO:0000269|PubMed:14512381, ECO:0000269|PubMed:18344421}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers, stems, siliques and seedlings. Observed in zones of cell proliferation, the vascular system and floral abscission zones. Expressed in the guard cells in stems, in xylem vessels and parenchyma cells surrounding the vessels, in the cambium and in the phloem, but not in the secondary xylem. {ECO:0000269|PubMed:14512381, ECO:0000269|PubMed:15181203, ECO:0000269|PubMed:18344421}. locus:2180652;,locus:2103172; AT5G26120,AT3G10740 alpha-l-arabinofuranosidase Alpha-L-arabinofuranosidase C-terminus family protein, expressed (Os12g0128700 protein),Alpha-L-arabinofuranosidase C-terminus family protein, expressed (Os11g0131900 protein) (cDNA clone:J013002I08, full insert sequence),Os11g0131900 protein (Fragment),Os04g0274250 protein Q2QY88,Q2RAZ7,A0A0P0XYH3,A0A0P0W8T4 Q2QY88_ORYSJ,Q2RAZ7_ORYSJ,A0A0P0XYH3_ORYSJ,A0A0P0W8T4_ORYSJ Os12g0128700 LOC_Os12g03470 Os12g0128700 OSNPB_120128700,LOC_Os11g03730 Os11g0131900 OsJ_32826 OSNPB_110131900,Os11g0131900 OSNPB_110131900,Os04g0274250 OSNPB_040274250 ENOG411DQTP PCMP-H60 Q9ZUW3 PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 97185 Pentatricopeptide repeat-containing protein At2g27610 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2038603; AT2G27610 Pentatricopeptide repeat-containing protein Os05g0455900 protein (Unknow protein) Q60EM0 Q60EM0_ORYSJ Os05g0455900 OJ1651_D06.13 OsJ_18783 OSNPB_050455900 ENOG411DQTS LSF1 F4J117,A0A1I9LL73 LSF1_ARATH,A0A1I9LL73_ARATH Phosphoglucan phosphatase LSF1, chloroplastic (EC 3.1.3.-) (Phosphoglucan phosphatase like sex Four1) (Protein LIKE SEX4 1),Like SEX4 1 DISRUPTION PHENOTYPE: Slight reduction in rosette size and fresh weight and increased starch content in leaves. {ECO:0000269|PubMed:20018601}. Elevated starch levels-A. Smith-2010 FUNCTION: Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation. Participates in the regulation of the initial steps of starch degradation at the granule surface. May release a different set of phosphate groups from those removed by DSP4. {ECO:0000269|PubMed:20018601}. 3.1.3.- 65741,50276 Phosphoglucan phosphatase LSF1, chloroplastic (EC 3.1.3.-) (Phosphoglucan phosphatase like sex Four1) (Protein LIKE SEX4 1),Like SEX4 1 chloroplast [GO:0009507]; chloroplast starch grain [GO:0009569]; chloroplast stroma [GO:0009570]; starch grain [GO:0043036]; carbohydrate phosphatase activity [GO:0019203]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; starch catabolic process [GO:0005983],protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; starch catabolic process [GO:0005983] locus:2084133; AT3G01510 Dual specificity phosphatase catalytic domain Os08g0379300 protein,Os08g0379300 protein (Fragment) Q7EYM9,A0A0N7KPS3,A0A0P0XFR9 Q7EYM9_ORYSJ,A0A0N7KPS3_ORYSJ,A0A0P0XFR9_ORYSJ Os08g0379300 Os08g0379300 OSJNBb0011E04.124 OSNPB_080379300 P0709D11.14,Os08g0379300 OSNPB_080379300 ENOG411DQTH SCP1-like small phosphatase 5 Q9LYI7 Q9LYI7_ARATH At5g11860 (SCP1-like small phosphatase 5) (Uncharacterized protein F14F18_30) 34847 At5g11860 (SCP1-like small phosphatase 5) (Uncharacterized protein F14F18_30) chromosome [GO:0005694]; chromosome, centromeric region [GO:0000775]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; protein dephosphorylation [GO:0006470] locus:2143019; AT5G11860 phosphatase-like protein CTD phosphatase-like protein (Os07g0207700 protein),NLI interacting factor-like protein (Os07g0207700 protein) (cDNA clone:002-147-A05, full insert sequence),NLI interacting factor, putative, expressed (Os03g0850100 protein) (Putative NLI-interacting factor),Os07g0207700 protein C7EYT0,Q7F1S4,Q84K83,A0A0P0X3R4 C7EYT0_ORYSJ,Q7F1S4_ORYSJ,Q84K83_ORYSJ,A0A0P0X3R4_ORYSJ Os07g0207700 OSNPB_070207700,OJ1559_F09.106 Os07g0207700 OJ1119_B04.36 OSNPB_070207700,LOC_Os03g63300 Os03g0850100 OsJ_13375 OSJNBa0015N08.2 OSJNBb0096M04.20 OSNPB_030850100 ENOG411DQTJ Q93YN5,F4KIJ2 Q93YN5_ARATH,F4KIJ2_ARATH ABC1 family protein (At5g24810/F6A4.20) (Uncharacterized protein AT5g24810;F6A4.20),ABC1 family protein 112210,116136 ABC1 family protein (At5g24810/F6A4.20) (Uncharacterized protein AT5g24810;F6A4.20),ABC1 family protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886] locus:2149408; AT5G24810 Beta-lactamase ABC transporter-like (Os06g0701300 protein),Os06g0701300 protein (Fragment) Q5Z8Y3,A0A0P0X0J0,A0A0P0X0G5 Q5Z8Y3_ORYSJ,A0A0P0X0J0_ORYSJ,A0A0P0X0G5_ORYSJ Os06g0701300 OSNPB_060701300 P0596H10.5,Os06g0701300 OSNPB_060701300 ENOG411DQTC MRH10.6 Q9FND0,F4K7E0 Q9FND0_ARATH,F4K7E0_ARATH Gb|AAD20086.1 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Uncharacterized protein At5g43960),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein 50122,43485 Gb|AAD20086.1 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Uncharacterized protein At5g43960),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; transport [GO:0006810],intracellular [GO:0005622]; RNA binding [GO:0003723]; transport [GO:0006810] locus:2172472; AT5G43960 G3BP-like protein-like Os02g0131700 protein A0A0P0VEB3 A0A0P0VEB3_ORYSJ Os02g0131700 OSNPB_020131700 ENOG411EMN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0236100 protein A0A0P0Y8Q6 A0A0P0Y8Q6_ORYSJ Os12g0236100 OSNPB_120236100 ENOG411EMN7 Q9SKZ0,F4ISS2 Q9SKZ0_ARATH,F4ISS2_ARATH At2g32090/F22D22.16 (Expressed protein) (Lactoylglutathione lyase / glyoxalase I family protein),Lactoylglutathione lyase / glyoxalase I family protein 14996,12521 At2g32090/F22D22.16 (Expressed protein) (Lactoylglutathione lyase / glyoxalase I family protein),Lactoylglutathione lyase / glyoxalase I family protein lyase activity [GO:0016829] locus:2045482; AT2G32090 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NA NA NA NA NA NA NA ENOG411EMN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain NA NA NA NA NA NA NA ENOG411DWN9 SSRP1 Q05153 SSRP1_ARATH FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (High mobility group B protein 8) (Nucleosome/chromatin assembly factor group D 08) (Nucleosome/chromatin assembly factor group D 8) (Protein NUCLEAR FUSION DEFECTIVE 8) (Recombination signal sequence recognition protein 1) DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. Very reduced leaf size.Leaf shape resembles that if ssrp1-2 single mutant.Earlier flowering than either single mutant. Increased branching and leaf number; Abnormal flower and leaf morphology; Reduced fertility; Early flowering-K. Grasser-2009 FUNCTION: Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. Binds specifically to double-stranded DNA (Probable). Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus (PubMed:16698901). {ECO:0000269|PubMed:16698901, ECO:0000305|PubMed:15546350}. R-ATH-674695;R-ATH-6796648;R-ATH-6804756; 71646 FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (High mobility group B protein 8) (Nucleosome/chromatin assembly factor group D 08) (Nucleosome/chromatin assembly factor group D 8) (Protein NUCLEAR FUSION DEFECTIVE 8) (Recombination signal sequence recognition protein 1) FACT complex [GO:0035101]; nuclear euchromatin [GO:0005719]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Widely expressed. Present in embryos, shoots and roots, whereas it is not present in terminally differentiated cells such as mature trichoblasts or cells of the root cap (at protein level). {ECO:0000269|PubMed:15546350}. locus:2098413; AT3G28730 Component of the FACT complex a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II FACT complex subunit SSRP1-B (Facilitates chromatin transcription complex subunit SSRP1-B) (Recombination signal sequence recognition protein 1-B),FACT complex subunit SSRP1-A (Early drought-induced protein R1G1A) (Facilitates chromatin transcription complex subunit SSRP1-A) (Recombination signal sequence recognition protein 1-A) Q65WY8,Q9LGR0 SSP1B_ORYSJ,SSP1A_ORYSJ SSRP1-B Os05g0182600 LOC_Os05g08970 OsJ_17363 P0453H11.18 P0683B12.1,SSRP1-A R1G1A Os01g0184900 LOC_Os01g08970 OsJ_00664 P0510F03.10 FUNCTION: Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. Binds specifically to double-stranded DNA (By similarity). {ECO:0000250}. ENOG411DWN8 AED1 Q9LEW3,Q8S9J6 AED1_ARATH,ASPA_ARATH Aspartyl protease AED1 (EC 3.4.23.-) (Apoplastic EDS1-dependent protein 1),Aspartyl protease family protein At5g10770 (EC 3.4.23.-) FUNCTION: Aspartyl protease involved in a homeostatic feedback mechanism regulating systemic immunity. Has only mild or no influence on local defenses. Acts downstream of salicylic acid to suppress systemic immunity. {ECO:0000269|PubMed:24755512}.,FUNCTION: Probably not redundant with AED1 and not involved in restriction of salicylic acid (SA) or systemic acquired resistance (SAR) signaling. {ECO:0000269|PubMed:24755512}. 3.4.23.- 49474,49864 Aspartyl protease AED1 (EC 3.4.23.-) (Apoplastic EDS1-dependent protein 1),Aspartyl protease family protein At5g10770 (EC 3.4.23.-) apoplast [GO:0048046]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; systemic acquired resistance [GO:0009627],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2183715;,locus:2183730; AT5G10760,AT5G10770 aspartic proteinase Os06g0610800 protein (Putative nucleoid DNA-binding protein cnd41, chloroplast),Os09g0482200 protein (Os09g0482500 protein) (Putative nucleoid DNA-binding protein cnd41) Q69XG4,Q69QQ2 Q69XG4_ORYSJ,Q69QQ2_ORYSJ P0490F09.29-1 Os06g0610800 OSNPB_060610800,Os09g0482500 Os09g0482200 OsJ_29786 OSNPB_090482200 OSNPB_090482500 P0463D04.33 P0463D04.36 ENOG411DWN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Leucine zipper protein-like (Os01g0827600 protein) (cDNA clone:J033148K20, full insert sequence) Q5QLT4 Q5QLT4_ORYSJ Os01g0827600 B1088C09.8 OSNPB_010827600 ENOG411DWN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein Os01g0170600 protein Q0JQC2,A0A0P0UZF8 Q0JQC2_ORYSJ,A0A0P0UZF8_ORYSJ Os01g0170600 Os01g0170600 OSNPB_010170600,Os01g0170600 OSNPB_010170600 ENOG411DWN7 Q9SZU2 Q9SZU2_ARATH Glycosyltransferase (Glycosyltransferase family protein (DUF23)) (Uncharacterized protein AT4g37420) (Uncharacterized protein F6G17.70) 67364 Glycosyltransferase (Glycosyltransferase family protein (DUF23)) (Uncharacterized protein AT4g37420) (Uncharacterized protein F6G17.70) integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2126392; AT4G37420 UPF0392 protein Os06g0727900 protein (Fragment) A0A0N7KMS3 A0A0N7KMS3_ORYSJ Os06g0727900 OSNPB_060727900 ENOG411DWN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative RNA methylase family UPF0020 NA NA NA NA NA NA NA ENOG411DWN1 Q6DYE5 U496K_ARATH UPF0496 protein At1g20180 44074 UPF0496 protein At1g20180 integral component of membrane [GO:0016021] locus:2198591; AT1G20180 UPF0496 protein NA NA NA NA NA NA NA ENOG411DWN0 NAP1 Q5S2C4 NCKP1_ARATH Protein NAP1 (ARP2/3 regulatory protein subunit NAPP) (NAP of plants) (Nck-associated protein 1) (AtNAP1) (AtNAP125) (Protein GNARLED) (p125Nap1) FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex. R-ATH-6798695; 158915 Protein NAP1 (ARP2/3 regulatory protein subunit NAPP) (NAP of plants) (Nck-associated protein 1) (AtNAP1) (AtNAP125) (Protein GNARLED) (p125Nap1) endoplasmic reticulum membrane [GO:0005789]; nucleus [GO:0005634]; SCAR complex [GO:0031209]; actin filament organization [GO:0007015]; actin nucleation [GO:0045010]; multidimensional cell growth [GO:0009825]; positive regulation of transcription, DNA-templated [GO:0045893]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed in roots, root hairs, hypocotyls, cotyledons, stems, leaves, trichomes, and flowers. {ECO:0000269|PubMed:15294869, ECO:0000269|PubMed:15296760, ECO:0000269|PubMed:15316111, ECO:0000269|PubMed:15516496}. locus:2063479; AT2G35110 Membrane-associated apoptosis protein Probable protein NAP1 (NAP of plants) (Nck-associated protein 1) (P125Nap1),Os08g0544500 protein (Fragment) Q6ZBH9,Q0J3Z5,A0A0P0XJ08 NCKP1_ORYSJ,Q0J3Z5_ORYSJ,A0A0P0XJ08_ORYSJ NAP1 Os08g0544500 LOC_Os08g43130 P0623F08.25,Os08g0544500 Os08g0544500 OSNPB_080544500,Os08g0544500 OSNPB_080544500 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411DWN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Microtubule associated protein (MAP65/ASE1 family) Os03g0719000 protein (Fragment) Q0DP33 Q0DP33_ORYSJ Os03g0719000 OSNPB_030719000 ENOG411DWNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:YDG_SRA Os08g0399300 protein,Histone-lysine N-methyltransferase-like protein (Os08g0400000 protein) (cDNA clone:J023022E24, full insert sequence),Os08g0400200 protein (Putative histone-lysine N-methyltransferase),Os08g0399500 protein B9G0S4,Q6ZJS5,Q6Z2A2,A0A0P0XFP4 B9G0S4_ORYSJ,Q6ZJS5_ORYSJ,Q6Z2A2_ORYSJ,A0A0P0XFP4_ORYSJ Os08g0399300 OsJ_27213 OSNPB_080399300,Os08g0400000 OJ1051_A08.21 OSNPB_080400000,Os08g0400200 OJ1051_A08.22 OSJNBa0086F04.1 OSNPB_080400200,Os08g0399500 OSNPB_080399500 ENOG411DWNN Q9FY57,A0A1P8BCL0,F4JWE4,F4JWQ4 Q9FY57_ARATH,A0A1P8BCL0_ARATH,F4JWE4_ARATH,F4JWQ4_ARATH Ubiquitin family protein (Ubiquitin-like superfamily protein) (Uncharacterized protein T5K6_70),Ubiquitin-like superfamily protein 39706,37279,42212,67412 Ubiquitin family protein (Ubiquitin-like superfamily protein) (Uncharacterized protein T5K6_70),Ubiquitin-like superfamily protein locus:2184921;,locus:2145432; AT5G11080,AT5G25270 Inherit from KOG: BCL-2-associated athanogene 6 NA NA NA NA NA NA NA ENOG411DWNI MWD22.11 Q9LU57,A0A1P8BD99,A0A1P8BD93,A8MS62 Q9LU57_ARATH,A0A1P8BD99_ARATH,A0A1P8BD93_ARATH,A8MS62_ARATH U6 snRNA phosphodiesterase (EC 3.1.4.-),U6 snRNA phosphodiesterase-like protein FUNCTION: Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA. {ECO:0000256|HAMAP-Rule:MF_03040}. 3.1.4.- 31855,28765,25367,26687 U6 snRNA phosphodiesterase (EC 3.1.4.-),U6 snRNA phosphodiesterase-like protein nucleus [GO:0005634]; 3'-5'-exoribonuclease activity [GO:0000175]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380]; U6 snRNA 3'-end processing [GO:0034477],nucleus [GO:0005634]; nuclease activity [GO:0004518]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380]; U6 snRNA 3'-end processing [GO:0034477],nuclease activity [GO:0004518]; U6 snRNA 3'-end processing [GO:0034477] locus:2176162; AT5G51170 Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule leading to the formation of mature U6 snRNA (By similarity) Os02g0651000 protein Q0DZ34 Q0DZ34_ORYSJ Os02g0651000 Os02g0651000 OSNPB_020651000 ENOG411DWNH NPF6.1 Q9LYR6 PTR49_ARATH Protein NRT1/ PTR FAMILY 6.1 (AtNPF6.1) R-ATH-427975;R-ATH-6798695; 69075 Protein NRT1/ PTR FAMILY 6.1 (AtNPF6.1) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in flower and siliques. {ECO:0000269|PubMed:17481610}. locus:2181655; AT5G13400 peptide nitrate transporter Os01g0103100 protein (Putative peptide transport protein) (Putative peptide transporter-like protein) (cDNA clone:J023061L16, full insert sequence),Os01g0103100 protein Q9FTZ3,A0A0P0UX70 Q9FTZ3_ORYSJ,A0A0P0UX70_ORYSJ P0455C04.25 Os01g0103100 OSNPB_010103100 P0436E04.6,Os01g0103100 OSNPB_010103100 ENOG411DWNK AtTAD1 F4HU58,A0A1P8ASW1,A0A1P8ASQ9 F4HU58_ARATH,A0A1P8ASW1_ARATH,A0A1P8ASQ9_ARATH Denosine deaminases acting on tRNA FUNCTION: Involved in RNA editing. Catalyzes the specific deamination of adenosine-37 in the cytosolic tRNA-Ala. Generates inosine at the position 3'-adjacent to the anticodon tRNA-Ala. {ECO:0000269|PubMed:23355609}. R-ATH-75102;R-ATH-77042; 46493,47871,45961 Denosine deaminases acting on tRNA adenosine deaminase activity [GO:0004000]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2198185; AT1G01760 adenosine deaminase Os04g0683500 protein (cDNA clone:001-204-B01, full insert sequence),Os04g0683500 protein,OSJNBa0032F06.25 protein (Os04g0683500 protein) B7EYF8,Q0J8X1,Q7XPV6 B7EYF8_ORYSJ,Q0J8X1_ORYSJ,Q7XPV6_ORYSJ Os04g0683500 OSNPB_040683500,Os04g0683500 Os04g0683500 OSNPB_040683500,OSJNBa0032F06.25 Os04g0683500 OSNPB_040683500 ENOG411DWNE MTI20.22 Q9FJM0,A0A1P8BEY8 Q9FJM0_ARATH,A0A1P8BEY8_ARATH GTP binding protein-like (GTP-binding protein, HflX),GTP-binding protein, HflX ARA:GQT-2358-MONOMER; 60528,43158 GTP binding protein-like (GTP-binding protein, HflX),GTP-binding protein, HflX chloroplast [GO:0009507]; GTP binding [GO:0005525]; ribosome binding [GO:0043022],GTP binding [GO:0005525] locus:2174458; AT5G57960 gtp-binding protein Os11g0592700 protein (Small GTP-binding protein domain containing protein, expressed) Q2R1U5 Q2R1U5_ORYSJ Os11g0592700 LOC_Os11g38020 OSNPB_110592700 ENOG411DWND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os02g0699000 protein (Putative nitrate transporter NRT1) Q6Z8E5 Q6Z8E5_ORYSJ Os02g0699000 Os02g0699000 OSNPB_020699000 P0459B01.23 ENOG411DWNG O82808,A0A1P8AXX7 O82808_ARATH,A0A1P8AXX7_ARATH At2g25950 (Expressed protein) (PITH domain protein (DUF1000)) (Uncharacterized protein At2g25950),PITH domain protein (DUF1000) 22689,21397 At2g25950 (Expressed protein) (PITH domain protein (DUF1000)) (Uncharacterized protein At2g25950),PITH domain protein (DUF1000) locus:2057432; AT2G25950 PITH domain Os01g0559000 protein (Thioredoxin family Trp26-like protein) (cDNA clone:006-307-H03, full insert sequence),Os01g0559000 protein Q5JKQ4,A0A0P0V423 Q5JKQ4_ORYSJ,A0A0P0V423_ORYSJ B1064G04.15-1 B1144D11.37-1 Os01g0559000 OsJ_02227 OSNPB_010559000,Os01g0559000 OSNPB_010559000 ENOG411DWNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase OSJNBb0050O03.5 protein (Os04g0116600 protein) (cDNA clone:J013001B01, full insert sequence),Os06g0300200 protein Q7XT17,A0A0P0WVX6 Q7XT17_ORYSJ,A0A0P0WVX6_ORYSJ Os04g0116600 Os04g0116600 OsJ_13573 OSJNBb0050O03.5 OSNPB_040116600,Os06g0300200 OSNPB_060300200 ENOG411DWNA FRS8 Q9S793 FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 FUNCTION: Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. 82564 Protein FAR1-RELATED SEQUENCE 8 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2016259; AT1G80010 protein FAR1-RELATED SEQUENCE Os03g0843700 protein (Putative far-red impaired response protein) (Transposon protein, putative, unclassified, expressed) Q75LD4 Q75LD4_ORYSJ OSJNBa0032G11.9 LOC_Os03g62660 Os03g0843700 OSNPB_030843700 ENOG411DWNC GTE7,GTE2 Q7Y214,Q9LXA7 GTE7_ARATH,GTE2_ARATH Transcription factor GTE7 (Bromodomain-containing protein GTE7) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E7),Transcription factor GTE2 (Bromodomain-containing protein GTE2) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E2) 65077,64103 Transcription factor GTE7 (Bromodomain-containing protein GTE7) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E7),Transcription factor GTE2 (Bromodomain-containing protein GTE2) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E2) nucleus [GO:0005634]; DNA mediated transformation [GO:0009294]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2155715; AT5G65630,AT5G10550 Transcription factor OSJNBa0053K19.4 protein (OSJNBb0085C12.15 protein) (Os04g0623100 protein) (cDNA clone:J013097L22, full insert sequence),Os04g0622000 protein,Os04g0622800 protein Q7X637,A0A0P0WF17,A0A0N7KJQ5 Q7X637_ORYSJ,A0A0P0WF17_ORYSJ,A0A0N7KJQ5_ORYSJ Os04g0623100 OSJNBa0053K19.4 OSJNBb0085C12.15 OSNPB_040623100,Os04g0622000 OSNPB_040622000,Os04g0622800 OSNPB_040622800 ENOG411DWNB Q9LSB0,F4J8U1 Q9LSB0_ARATH,F4J8U1_ARATH Ankyrin repeat family protein 74813,67901 Ankyrin repeat family protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; membrane [GO:0016020]; signal transduction [GO:0007165] locus:2094039; AT3G18670 ANK NA NA NA NA NA NA NA ENOG411DWNY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os04g0271800 protein,OSJNBb0056F09.12 protein (Os04g0272200 protein),Glycosyltransferase (EC 2.4.1.-) A3ART7,Q7XSY4,Q7XSZ0 A3ART7_ORYSJ,Q7XSY4_ORYSJ,Q7XSZ0_ORYSJ Os04g0271800 OsJ_14084 OSNPB_040271800,Os04g0272200 Os04g0272200 OSJNBb0056F09.12 OSNPB_040272200,Os04g0271700 Os04g0271700 OSJNBb0056F09.6 OSNPB_040271700 ENOG411DWNX F4HXZ8 F4HXZ8_ARATH Transmembrane protein 38194 Transmembrane protein integral component of membrane [GO:0016021] locus:2027057; AT1G21370 DUF218 domain OSJNBa0006B20.20 protein (Os04g0438500 protein) Q7XRA6 Q7XRA6_ORYSJ Os04g0438500 Os04g0438500 OSJNBa0006B20.20 OSNPB_040438500 ENOG411DWNZ CYP86B1,T22D6_190 Q9FMY1,Q8L7B4,Q9LEY2 C86B1_ARATH,Q8L7B4_ARATH,Q9LEY2_ARATH Cytochrome P450 86B1 (EC 1.14.-.-),Cytochrome P450 superfamily protein (Cytochrome P450-like protein) DISRUPTION PHENOTYPE: No visible vegetative growth phenotype. Very large reduction in alpha, omega-bifunctional C22 to C24 saturated suberin components in seeds. No effect on seed coat permeability. {ECO:0000269|PubMed:19525321, ECO:0000269|PubMed:19759341}. Abnormal fatty acid composition-F. Pinot-2009 FUNCTION: Involved in very long chain fatty acids (VLCFA) omega-hydroxylation. Required for the synthesis of saturated VLCFA alpha, omega-bifunctional suberin monomers. {ECO:0000269|PubMed:19525321, ECO:0000269|PubMed:19759341}. ARA:AT5G23190-MONOMER;MetaCyc:AT5G23190-MONOMER;,ARA:AT5G08250-MONOMER; 1.14.15.3; 1.14.-.- 64325,56587,63598 Cytochrome P450 86B1 (EC 1.14.-.-),Cytochrome P450 superfamily protein (Cytochrome P450-like protein) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; cell wall organization [GO:0071555]; suberin biosynthetic process [GO:0010345]; very long-chain fatty acid biosynthetic process [GO:0042761],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Expressed in roots endodermis, anthers, stigmas, stomata of young pedicels of inflorescences, the placenta region of siliques, at the level of the hilum in matures seeds, at the junction of siliques to pedicels where abscission of floral parts takes place and in nectary glands. {ECO:0000269|PubMed:19525321}. locus:2166786;,locus:2181579; AT5G23190,AT5G08250 cytochrome P450 Cytochrome P450 family protein, expressed (Os10g0486100 protein) (Putative cytochrome P450 protein) Q8W372 Q8W372_ORYSJ Os10g0486100 LOC_Os10g34480 OSJNBa0029C15.3 OSNPB_100486100 ENOG411DWNU Q9LJ65,Q9LJ66,F4J9Y8,F4J9Z1,F4J9Y9 Q9LJ65_ARATH,Q9LJ66_ARATH,F4J9Y8_ARATH,F4J9Z1_ARATH,F4J9Y9_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxidase-like protein) (Uncharacterized protein At3g19010),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxylase-like protein) (Uncharacterized protein At3g19000),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT3G19010-MONOMER;,ARA:AT3G19000-MONOMER; 40696,40659,31677,34383,36994 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxidase-like protein) (Uncharacterized protein At3g19010),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxylase-like protein) (Uncharacterized protein At3g19000),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2085879;,locus:2085864; AT3G19010,AT3G19000 gibberellin 20 oxidase Os03g0618300 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (Putative oxidoreductase) (cDNA clone:J033026A10, full insert sequence),Os08g0249900 protein Q6AV32,A0A0P0XE27 Q6AV32_ORYSJ,A0A0P0XE27_ORYSJ LOC_Os03g42130 Os03g0618300 OSJNBa0063J18.10 OSNPB_030618300,Os08g0249900 OSNPB_080249900 ENOG411DWNT F11F12.1 Q9LPT6 Q9LPT6_ARATH F11F12.1 protein (OTU-containing deubiquitinating enzyme 2) (OTU-like cysteine protease family protein) (Uncharacterized protein At1g50670) (Uncharacterized protein F17J6.19) ARA:GQT-1841-MONOMER; R-ATH-5689896; 23425 F11F12.1 protein (OTU-containing deubiquitinating enzyme 2) (OTU-like cysteine protease family protein) (Uncharacterized protein At1g50670) (Uncharacterized protein F17J6.19) cytosol [GO:0005829]; nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; endoplasmic reticulum unfolded protein response [GO:0030968]; protein deubiquitination [GO:0016579]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2007991; AT1G50670 ubiquitin thioesterase Os02g0164800 protein Q6H6V5 Q6H6V5_ORYSJ Os02g0164800 Os02g0164800 OJ1661_C12.24 OSJNBa0023I17.7 OSNPB_020164800 ENOG411DWNW Q9SAD9 PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial 58676 Pentatricopeptide repeat-containing protein At1g13040, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2031825; AT1G13040 Pentatricopeptide repeat-containing protein Membrane-associated salt-inducible protein-like (Os07g0688100 protein) (cDNA clone:J033055B02, full insert sequence) Q7XIR4 Q7XIR4_ORYSJ OJ1165_F02.107 OJ1150_E04.130 Os07g0688100 OsJ_25651 OSNPB_070688100 ENOG411DWNV WRKY4,WRKY3 Q9XI90,Q9ZQ70 WRKY4_ARATH,WRKY3_ARATH Probable WRKY transcription factor 4 (WRKY DNA-binding protein 4),Probable WRKY transcription factor 3 (WRKY DNA-binding protein 3) DISRUPTION PHENOTYPE: Increased sensitivity to the necrotrophic fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:18570649}. FUNCTION: Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.,FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 55816,56284 Probable WRKY transcription factor 4 (WRKY DNA-binding protein 4),Probable WRKY transcription factor 3 (WRKY DNA-binding protein 3) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; defense response [GO:0006952]; negative regulation of defense response to bacterium [GO:1900425]; regulation of defense response to fungus [GO:1900150]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. locus:2014799;,locus:2063835; AT1G13960,AT2G03340 Transcription factor Os03g0444900 protein (Fragment),Os12g0507300 protein Q0DQV8,B9GDC1 Q0DQV8_ORYSJ,B9GDC1_ORYSJ Os03g0444900 OSNPB_030444900,Os12g0507300 OsJ_36227 OSNPB_120507300 ENOG411DWNQ LIGB Q949R4 DIOXL_ARATH Extradiol ring-cleavage dioxygenase (AtLigB) (EC 1.13.11.-) DISRUPTION PHENOTYPE: Deficient in arabidopyrones. {ECO:0000269|PubMed:22923580}. FUNCTION: Opens the cyclic ring of caffealdehyde between carbons 2 and 3 or between carbons 4 and 5. Involved in the biosynthesis of arabidopyrones. {ECO:0000269|PubMed:22923580}. MISCELLANEOUS: Arabidopyrones are derived from phenylalanine instead of tyrosine like other ring-cleavage-derived plant metabolites. {ECO:0000305|PubMed:22923580}. ARA:AT4G15093-MONOMER;MetaCyc:MONOMER-19384; 1.13.11.- 30247 Extradiol ring-cleavage dioxygenase (AtLigB) (EC 1.13.11.-) dioxygenase activity [GO:0051213]; ferrous iron binding [GO:0008198]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen [GO:0016701]; zinc ion binding [GO:0008270]; cellular aromatic compound metabolic process [GO:0006725] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems and flowers. {ECO:0000269|PubMed:22923580}. locus:505006468; AT4G15093 45-DOPA dioxygenase Os01g0878800 protein,Os01g0878800 protein (Putative 4,5-DOPA dioxygenase extradiol),Os01g0878900 protein (Putative 4,5-DOPA dioxygenase extradiol) (cDNA clone:006-201-A03, full insert sequence) (cDNA clone:006-208-A08, full insert sequence) (cDNA clone:006-301-C01, full insert sequence) (cDNA clone:006-305-C02, full insert sequence) (cDNA clone:006-308-G05, full insert sequence) (cDNA clone:006-311-C01, full insert sequence) Q0JH82,Q8L4J7,Q8L3U9 Q0JH82_ORYSJ,Q8L4J7_ORYSJ,Q8L3U9_ORYSJ Os01g0878800 Os01g0878800 OSNPB_010878800,Os01g0878800 OSNPB_010878800 P0018C10.19 P0471B04.30,Os01g0878900 Os01g0878900 OSNPB_010878900 P0018C10.20 P0471B04.31 ENOG411DWNP VTI13,VTI11,VTI12,MIJ24.100 Q9LVP9,Q9SEL6,Q9SEL5,Q1PDQ2,A1A6H8 VTI13_ARATH,VTI11_ARATH,VTI12_ARATH,Q1PDQ2_ARATH,A1A6H8_ARATH Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle soluble NSF attachment protein receptor 13) (Vesicle transport v-SNARE protein VTI13),Vesicle transport v-SNARE 11 (AtVTI11) (Protein SHOOT GRAVITROPISM 4) (Vesicle soluble NSF attachment protein receptor VTI1a) (AtVTI1a) (Vesicle transport v-SNARE protein VTI1a),Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle soluble NSF attachment protein receptor VTI1b) (AtVTI1b) (Vesicle transport v-SNARE protein VTI1b),Vesicle transport v-SNARE family protein,At3g29100 (Vesicle transport V-snare 13) DISRUPTION PHENOTYPE: Abnormal amyloplast sedimentation and gravitropism in both inflorescence stems and hypocotyls with elongated stems in a zigzag fashion, due to narrower angles in internodes mediated by aberrant cell shapes. Reduced formation of vacuolar membrane 'bulbs'. Small and wrinkled rosette leaves. Fragmentation and vesiculation of vacuoles mostly in cortex cells of the inflorescence stem in comparison to endodermal cells. {ECO:0000269|PubMed:11826297, ECO:0000269|PubMed:11826298, ECO:0000269|PubMed:21645145, ECO:0000269|PubMed:9210330}. Inflorescence stems and hypocotyls of mutant plants showed abnormal gravitropic response while root gravitropism was normal.,Zip1 dominantly supresses the zigzag phenotype of the zig1 mutant. The zip1 gain of function allele results in ectopic expression of VTI12 which forms complexes with SYP22. Corrects the gravtitropism defect of zag1 homozygotes.,Reduced response to gravity but not as strong as zig-1 along. Zip3 suppresses zig-1 phenotype. Abnormal hypocotyl and inflorescence gravitropism-M. Tasaka-2002,Sensitive to nitrogen and carbon starvation-N. Raikhel-2003 FUNCTION: May function as a v-SNARE responsible for targeting vesicles involved in the secretory pathway. {ECO:0000250}.,FUNCTION: May function as a v-SNARE responsible for targeting AtELP-containing vesicles from the trans-Golgi network (TGN) to the prevacuolar compartment (PVC). May be also involved in retrograde traffic to the cis-Golgi (By similarity). Promotes the formation of vacuolar membrane 'bulbs'. Required for amyloplast sedimentation in the endodermis during shoot gravitropism, which are thus acting as statoliths. Expression in the endodermis is essential for the shoot gravitropic response, whereas expression in other tissues may be responsible for the correct stem and leaf shape. {ECO:0000250, ECO:0000269|PubMed:11826297, ECO:0000269|PubMed:11826298, ECO:0000269|PubMed:21645145, ECO:0000269|PubMed:9210330}.,FUNCTION: May function as a v-SNARE responsible for the docking or fusion of transport vesicles within the trans-Golgi network (TGN). May be also involved in retrograde traffic to the cis-Golgi (By similarity). {ECO:0000250}. R-ATH-114608;R-ATH-6811438;R-ATH-6811440; 25026,24951,25057,23935,22189 Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle soluble NSF attachment protein receptor 13) (Vesicle transport v-SNARE protein VTI13),Vesicle transport v-SNARE 11 (AtVTI11) (Protein SHOOT GRAVITROPISM 4) (Vesicle soluble NSF attachment protein receptor VTI1a) (AtVTI1a) (Vesicle transport v-SNARE protein VTI1a),Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle soluble NSF attachment protein receptor VTI1b) (AtVTI1b) (Vesicle transport v-SNARE protein VTI1b),Vesicle transport v-SNARE family protein,At3g29100 (Vesicle transport V-snare 13) cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; plant-type vacuole [GO:0000325]; SNARE complex [GO:0031201]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; gravitropism [GO:0009630]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; trans-Golgi network [GO:0005802]; SNAP receptor activity [GO:0005484]; soluble NSF attachment protein activity [GO:0005483]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; intracellular transport [GO:0046907]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in roots, stems, flowers and leaves. locus:2175733;,locus:2200595;,locus:2164830;,locus:2094662; AT3G29100,AT5G39510,AT1G26670,AT5G39630 Vesicle transport V-snare NA NA NA NA NA NA NA ENOG411DWNS FTSH6 Q1PDW5,F4K9Q6 FTSH6_ARATH,F4K9Q6_ARATH ATP-dependent zinc metalloprotease FTSH 6, chloroplastic (AtFTSH6) (EC 3.4.24.-),FTSH protease 6 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16157880}. No visible change in plant growth development or pigmentation.,no visible difference in leaf morphology and variegation when grown under normal light and temperature conditions compared to wild-type. FUNCTION: Probable ATP-dependent zinc metallopeptidase. Involved in the degradation of the light-harvesting complex of photosystem II (LHC II) during senescence or high light acclimation. {ECO:0000269|PubMed:16157880}. 3.4.24.B20; 3.4.24.- 74515,55610 ATP-dependent zinc metalloprotease FTSH 6, chloroplastic (AtFTSH6) (EC 3.4.24.-),FTSH protease 6 chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; zinc ion binding [GO:0008270]; photoinhibition [GO:0010205]; photosystem II repair [GO:0010206]; thylakoid membrane organization [GO:0010027],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; peptidase activity [GO:0008233]; zinc ion binding [GO:0008270]; PSII associated light-harvesting complex II catabolic process [GO:0010304] locus:2150926; AT5G15250 ATP-dependent zinc metalloprotease FTSH 6 ATP-dependent zinc metalloprotease FTSH 6, chloroplastic (OsFTSH6) (EC 3.4.24.-),Os06g0229000 protein (Fragment),Os06g0229066 protein Q67WJ2,Q0DDE7,A0A0P0WUS5 FTSH6_ORYSJ,Q0DDE7_ORYSJ,A0A0P0WUS5_ORYSJ FTSH6 Os06g0229066 LOC_Os06g12370 OsJ_019841 P0425F05.40 P0525F01.10,Os06g0229000 Os06g0229000 OSNPB_060229000,Os06g0229066 OSNPB_060229066 FUNCTION: Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. ENOG411DWNR DROUGHT SENSITIVE 1 Q9SAI7 Q9SAI7_ARATH DROUGHT SENSITIVE 1 (F23A5.6 protein) 57777 DROUGHT SENSITIVE 1 (F23A5.6 protein) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; DNA binding [GO:0003677]; cellular response to DNA damage stimulus [GO:0006974]; regulation of DNA damage checkpoint [GO:2000001]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] locus:2025762; AT1G80710 WD repeat-containing protein 76-like Os08g0285200 protein (Fragment),Os08g0282500 protein (Transducin / WD-40 repeat protein-like) (cDNA clone:001-123-A10, full insert sequence) (cDNA clone:J033058D01, full insert sequence) Q0J6Q2,Q6YS10 Q0J6Q2_ORYSJ,Q6YS10_ORYSJ Os08g0285200 Os08g0285200 OSNPB_080285200,Os08g0282500 Os08g0282500 B1446H11.26 OSNPB_080282500 ENOG411DYX7 FAS2 Q9SXY1,F4KF21 FAS2_ARATH,F4KF21_ARATH Chromatin assembly factor 1 subunit FAS2 (CAF-1 subunit FAS2) (CAF-1 p60 homolog) (Protein FASCIATA 2),Transducin/WD40 repeat-like superfamily protein DISRUPTION PHENOTYPE: Fasciated plants with broad, flat stems and disrupted phyllotaxy. Shoot apical meristem enlargement and altered floral development. Reduced heterochromatin content, more open conformation of euchromatin and dramatic increase of homologous recombination. {ECO:0000269|PubMed:11163246}. Slow growth; Short roots; Fasciated stems and inflorescences; Abnormal leaf morphology; Abnormal phyllotaxy; Reduced petal and stamen number; Narrow sepals and petals; Reduced fertility; Abnormal SAM and RAM morphology-T. Araki-2001 FUNCTION: Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. Required for several aspects of development, including seedling growth and leaf hair differentiation. Plays a critical role in the organization of shoot apical meristem (SAM) and root apical meristem (RAM) during postembryonic development by facilitating stable maintenance of gene expression states. Seems not required to maintain transcriptional repression of heterochromatic genes. Involved in heterologous recombination. {ECO:0000269|PubMed:11163246, ECO:0000269|PubMed:16452472, ECO:0000269|PubMed:17021044, ECO:0000269|PubMed:17110925, ECO:0000269|PubMed:18045841, ECO:0000269|PubMed:20699390}. 54106,47946 Chromatin assembly factor 1 subunit FAS2 (CAF-1 subunit FAS2) (CAF-1 p60 homolog) (Protein FASCIATA 2),Transducin/WD40 repeat-like superfamily protein CAF-1 complex [GO:0033186]; nucleus [GO:0005634]; histone binding [GO:0042393]; cell proliferation [GO:0008283]; covalent chromatin modification [GO:0016569]; DNA recombination [GO:0006310]; double-strand break repair via homologous recombination [GO:0000724]; heterochromatin assembly [GO:0031507]; leaf development [GO:0048366]; meristem structural organization [GO:0009933]; nucleosome assembly [GO:0006334]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] locus:2174784; AT5G64630 Chromatin assembly factor 1 subunit Chromatin assembly factor 1 subunit FAS2 homolog (CAF-1 subunit FAS2 homolog) (CAF-1 p60 homolog) (Protein FASCIATA 2 homolog) Q6ZD63 FAS2_ORYSJ FAS2 Os08g0108200 LOC_Os08g01680 OsJ_25768 P0450B04.31 FUNCTION: Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. Required for several aspects of development, including apical meristem maintenance by regulating the durations of the S- and G2-phases of the cell cycle through its chromatin assembly activity (By similarity). {ECO:0000250}. ENOG411EMQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EMNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family Os10g0203000 protein (Fragment) A0A0N7KRK1 A0A0N7KRK1_ORYSJ Os10g0203000 OSNPB_100203000 ENOG411EMNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease Auxin-regulated protein-like (Os08g0506000 protein) (cDNA clone:J033029N11, full insert sequence),Os09g0487700 protein (cDNA clone:J023041O13, full insert sequence) Q6Z3T8,Q0J0Q7 Q6Z3T8_ORYSJ,Q0J0Q7_ORYSJ Os08g0506000 Os08g0506000 OJ1134_H03.35 OSJNBa0025J22.25 OSNPB_080506000,Os09g0487700 Os09g0487700 OSNPB_090487700 ENOG411EMNG MUA2.4 Q9FKM4 Q9FKM4_ARATH At5g57460 (Muniscin carboxy-terminal mu-like domain protein) (Uncharacterized protein At5g57460) 70512 At5g57460 (Muniscin carboxy-terminal mu-like domain protein) (Uncharacterized protein At5g57460) chloroplast [GO:0009507]; plasma membrane [GO:0005886] locus:2174592; AT5G57460 NA Os08g0243900 protein (cDNA clone:J023142L20, full insert sequence) (cDNA clone:J033104B11, full insert sequence) Q6Z0T9 Q6Z0T9_ORYSJ Os08g0243900 OSJNBb0070J06.32 OSNPB_080243900 P0437G01.17 ENOG411EMNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411EMNY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in ubiquitin-hydrolases and other protein NA NA NA NA NA NA NA ENOG411EMNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EMNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Timeless protein NA NA NA NA NA NA NA ENOG411EMNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Timeless protein C terminal region NA NA NA NA NA NA NA ENOG411DR09 F18O21_290 Q9LYL0 Q9LYL0_ARATH tRNA (guanine(26)-N(2))-dimethyltransferase (EC 2.1.1.216) 2.1.1.216 48473 tRNA (guanine(26)-N(2))-dimethyltransferase (EC 2.1.1.216) plastid [GO:0009536]; tRNA (guanine-N2-)-methyltransferase activity [GO:0004809]; tRNA binding [GO:0000049] locus:2078431; AT3G56330 N(2)N(2)-dimethylguanosine tRNA methyltransferase Os05g0324200 protein,Os05g0324100 protein (Fragment) Q0DJ61,Q0DJ62 Q0DJ61_ORYSJ,Q0DJ62_ORYSJ Os05g0324200 Os05g0324200 OSNPB_050324200,Os05g0324100 Os05g0324100 OSNPB_050324100 ENOG411DSKB DME,DML3,DML2,ROS1 Q8LK56,O49498,Q9SR66,Q9SJQ6,A0A1P8B6V0,A0A1P8B6U7,A0A1P8B6V3,B3H5X5,B3H5Q5 DME_ARATH,DML3_ARATH,DML2_ARATH,ROS1_ARATH,A0A1P8B6V0_ARATH,A0A1P8B6U7_ARATH,A0A1P8B6V3_ARATH,B3H5X5_ARATH,B3H5Q5_ARATH Transcriptional activator DEMETER (EC 3.2.2.-) (DNA glycosylase-related protein DME),DEMETER-like protein 3 (EC 3.2.2.-),DEMETER-like protein 2 (EC 3.2.2.-),Protein ROS1 (EC 3.2.2.-) (DEMETER-like protein 1) (Repressor of silencing 1),Demeter-like protein 3,RRM in demeter (DUF1985) DISRUPTION PHENOTYPE: Decreased response to UV-B radiation (PubMed:24155752). No visible phenotype (PubMed:25569774). {ECO:0000269|PubMed:24155752, ECO:0000269|PubMed:25569774}. Enhanced sensitivity to methyl methanesulfonate and hydrogen peroxide,Mutants have abnormal bioluminescence (luciferase transgene) in response to cold osmotic stress or ABA treatment.,The mutation causes DNA hypermethylation in the promoter of several genes.,When three-week-old seedlings were treated with the cytosine methylation inhibitor 5-aza-2-deoxycytine (5Aza-dC) newly grown roots in ros1-1 were found to have a strong luminescence response similar to that in wild-type plants.,Increased sensitivity to DNA damagedecreased gene silencing as measured by expression of reporter genes small plants decreased trichome number early flowering in long daysdecreased cell division short roots.,The transgene-minus mutant plants did not produce any smRNAs and showed a wild-type level of DNA methylation in the endogenous RD29A gene promoter.,The luminescence response of the ros1/ ros1::ddm1/ddm1 double mutant was much higher than that of ros1/ros1::DDM1/DDM1 plants but was still lower than that of ROS1/ROS1::DDM1/DDM1 plants. Embryo defective; 50% defective seeds-R. Fischer; D. Meinke-2002,Increased DNA methylation-J. Zhu-2002 FUNCTION: Transcriptional activator involved in gene imprinting. Catalyzes the release of 5-methylcytosine (5-meC) from DNA by a glycosylase/lyase mechanism. Allows the expression of the maternal copy of the imprinted MEA gene before fertilization, possibly by antagonizing or suppressing DNA methylation on target promoter. Probably acts by nicking the MEA promoter. Required for stable reproducible patterns of floral and vegetative development. {ECO:0000269|PubMed:12150995, ECO:0000269|PubMed:15128940, ECO:0000269|PubMed:16624880}.,FUNCTION: Potential transcriptional activator that may act by nicking the target promoter. Catalyzes the release of 5-methylcytosine (5-meC) from DNA by a glycosylase/lyase mechanism (By similarity). {ECO:0000250}.,FUNCTION: Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity (PubMed:25240767). Generates 3'-phosphor-alpha,beta-unsaturated aldehyde (3'-PUA) as a primary 5-meC excision intermediate (PubMed:25228464). Prevents DNA hypermethylation, specifically in the promoter of otherwise silenced loci. May be involved in DNA repair through its nicking activity on methylated DNA. Binds with similar affinity to both methylated and non-methylated DNA. Highly distributive behavior on DNA substrates containing multiple 5-meC residues. Involved with Pol IV in the remodeling of the 5S rDNA chromatin via DNA methylation modifications during the first days of development post-germination. Participates in UV-B induced- and oxidative DNA damage repair (PubMed:24155752). {ECO:0000269|PubMed:12526807, ECO:0000269|PubMed:16624880, ECO:0000269|PubMed:18845569, ECO:0000269|PubMed:19443451, ECO:0000269|PubMed:20489198, ECO:0000269|PubMed:24155752, ECO:0000269|PubMed:25228464, ECO:0000269|PubMed:25240767}. MISCELLANEOUS: Although strongly related to DNA glycosylase proteins, it differs from these proteins because of its large size and its unique N-terminal basic domain. The DNA repair function has not been proved and may not exist.,MISCELLANEOUS: Although strongly related to DNA glycosylase proteins, it differs from these proteins. The DNA repair function may not exist.,MISCELLANEOUS: Although strongly related to DNA glycosylase proteins, it differs from these proteins. The DNA repair function may not exist. {ECO:0000305}.; MISCELLANEOUS: MBD7 binds to chromatin at high mCG density regions and then recruits IDM2 and IDM3, thus bringing IDM1 to the methylated DNA. The specific histone H3 acetylation marks produced by IDM1 create a chromatin environment that facilitate the binding of ROS1 to erase DNA methylation. {ECO:0000305|PubMed:25684209}. 3.2.2.- 221147,120297,151476,156547,97309,113447,127742,109954,8966 Transcriptional activator DEMETER (EC 3.2.2.-) (DNA glycosylase-related protein DME),DEMETER-like protein 3 (EC 3.2.2.-),DEMETER-like protein 2 (EC 3.2.2.-),Protein ROS1 (EC 3.2.2.-) (DEMETER-like protein 1) (Repressor of silencing 1),Demeter-like protein 3,RRM in demeter (DUF1985) nucleus [GO:0005634]; polar nucleus [GO:0043078]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA N-glycosylase activity [GO:0019104]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; metal ion binding [GO:0046872]; base-excision repair [GO:0006284]; DNA methylation [GO:0006306]; embryo development ending in seed dormancy [GO:0009793]; regulation of gene expression by genetic imprinting [GO:0006349]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA N-glycosylase activity [GO:0019104]; metal ion binding [GO:0046872]; base-excision repair [GO:0006284]; maintenance of DNA methylation [GO:0010216]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; base-excision repair [GO:0006284]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleolus [GO:0005730]; nucleus [GO:0005634]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA N-glycosylase activity [GO:0019104]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; metal ion binding [GO:0046872]; base-excision repair [GO:0006284]; chromatin silencing [GO:0006342]; defense response to fungus [GO:0050832]; DNA demethylation [GO:0080111]; DNA methylation [GO:0006306]; DNA repair [GO:0006281]; negative regulation of chromatin silencing [GO:0031936]; transcription, DNA-templated [GO:0006351],catalytic activity [GO:0003824]; base-excision repair [GO:0006284] DEVELOPMENTAL STAGE: Maternally expressed. Expressed primarily in the central cell of gametophyte before fertilization. Not expressed in endosperm and embryo after fertilization. TISSUE SPECIFICITY: Mainly expressed in immature flower buds, then decreases as the flower matures. Expressed in the ovule carpels, but not expressed in pollen stamens. Expressed in developing and mature ovules (stages 12-14), then strongly decreases after fertilization.,TISSUE SPECIFICITY: Expressed ubiquitously in both vegetative and reproductive organs. {ECO:0000269|PubMed:12526807}. locus:2184432;,locus:2124301;,locus:2100138;,locus:2044923;,locus:4515103342; AT5G04560,AT4G34060,AT3G10010,AT2G36490,AT4G04957 transcriptional activator Os01g0217900 protein (Os01g0218032 protein) (Fragment),Os05g0445900 protein (Fragment),Os05g0446000 protein (Fragment),Os02g0494700 protein,Os05g0446550 protein,Os05g0446600 protein (Fragment) C7IW64,Q0DHS4,A0A0P0WMX3,A0A0P0VJ76,A0A0P0WN66,A0A0P0WN36 C7IW64_ORYSJ,Q0DHS4_ORYSJ,A0A0P0WMX3_ORYSJ,A0A0P0VJ76_ORYSJ,A0A0P0WN66_ORYSJ,A0A0P0WN36_ORYSJ Os01g0218032 Os01g0217900 OSNPB_010218032,Os05g0445900 Os05g0445900 OSNPB_050445900,Os05g0446000 OSNPB_050446000,Os02g0494700 OSNPB_020494700,Os05g0446550 OSNPB_050446550,Os05g0446600 OSNPB_050446600 ENOG411DR0R KIN14S F4K4C5 KN14S_ARATH Kinesin-like protein KIN-14S 85438 Kinesin-like protein KIN-14S kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2143616; AT5G27550 KISc Kinesin-like protein KIN-14J Q75HV1 KN14J_ORYSJ KIN14J Os05g0397900 LOC_Os05g33030 OsJ_18460 OSJNBb0092G21.14 P0605G01.4 ENOG411DR0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) NA NA NA NA NA NA NA ENOG411DR0B MXC17.8 Q93W02 Q93W02_ARATH AT5g24690/MXC17_8 (Plant/protein, putative (DUF3411)) (Uncharacterized protein At5g24690) (Uncharacterized protein At5g24700) 56812 AT5g24690/MXC17_8 (Plant/protein, putative (DUF3411)) (Uncharacterized protein At5g24690) (Uncharacterized protein At5g24700) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2176826; AT5G24690 Domain of unknown function (DUF3411) Os12g0283800 protein (Fragment) Q0INW6,A0A0P0Y963 Q0INW6_ORYSJ,A0A0P0Y963_ORYSJ Os12g0283800 Os12g0283800 OSNPB_120283800,Os12g0283800 OSNPB_120283800 ENOG411DS1W Q8GUN1,F4JRY9 Q8GUN1_ARATH,F4JRY9_ARATH AT4G31340 protein (Myosin heavy chain-like protein) (Uncharacterized protein At4g31340),Myosin heavy chain-like protein 49649,47740 AT4G31340 protein (Myosin heavy chain-like protein) (Uncharacterized protein At4g31340),Myosin heavy chain-like protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774],integral component of membrane [GO:0016021] locus:2128166; AT4G31340 Inherit from euNOG: DNA repair ATPase-related Os09g0497700 protein Q0J0J2 Q0J0J2_ORYSJ Os09g0497700 Os09g0497700 OsJ_29885 OSNPB_090497700 ENOG411EM2Y RBG2,GR-RBP2 Q9SVM8,A8MSB9,A8MRQ4,F4JTU2 RBG2_ARATH,A8MSB9_ARATH,A8MRQ4_ARATH,F4JTU2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial (AtGR-RBP2) (AtRBG2) (Glycine-rich protein 2) (AtGRP2) (Mitochondrial RNA-binding protein 1a) (At-mRBP1a),Glycine-rich RNA-binding protein 2 DISRUPTION PHENOTYPE: Defects in seed germination under salt or cold stress. Defects in seedling growth under cold stress. {ECO:0000269|PubMed:17376161}. FUNCTION: Plays a role in RNA transcription or processing during stress. Binds RNAs and DNAs sequence with a preference to single-stranded nucleic acids. Displays strong affinity to poly(U) sequence. Exerts cold and freezing tolerance, probably by exhibiting an RNA chaperone activity during the cold and freezing adaptation process. {ECO:0000269|PubMed:11972043, ECO:0000269|PubMed:16207746, ECO:0000269|PubMed:17376161}. MISCELLANEOUS: Plants overexpressing RBG2 confer freezing tolerance. 15702,14691,13426,15417 Glycine-rich RNA-binding protein 2, mitochondrial (AtGR-RBP2) (AtRBG2) (Glycine-rich protein 2) (AtGRP2) (Mitochondrial RNA-binding protein 1a) (At-mRBP1a),Glycine-rich RNA-binding protein 2 mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; double-stranded DNA binding [GO:0003690]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; transcription antitermination factor activity, RNA binding [GO:0001072]; cold acclimation [GO:0009631]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; seed germination [GO:0009845]; transcription antitermination [GO:0031564],RNA binding [GO:0003723] locus:2119495; AT4G13850 Glycine-rich RNA-binding protein 2 Os01g0916600 protein (OsGRP2) (cDNA clone:001-028-A07, full insert sequence) (cDNA clone:J033067G16, full insert sequence) Q7F2X8 Q7F2X8_ORYSJ Os01g0916600 OsJ_04542 OSNPB_010916600 P0004D12.37 P0413C03.11 ENOG411EM2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nucleolysin Os08g0520300 protein (Putative oligouridylate binding protein) (cDNA clone:J023037G11, full insert sequence),Os11g0620100 protein (RNA recognition motif family protein, expressed) (cDNA clone:J013098D14, full insert sequence),Os07g0615400 protein (Putative oligouridylate binding protein) (cDNA clone:001-114-E11, full insert sequence) (cDNA clone:J033132B05, full insert sequence),Os11g0620100 protein (Fragment),Os07g0615400 protein (Fragment) Q6YZW2,Q2R134,Q8H393,A0A0P0Y4G7,A0A0P0X928 Q6YZW2_ORYSJ,Q2R134_ORYSJ,Q8H393_ORYSJ,A0A0P0Y4G7_ORYSJ,A0A0P0X928_ORYSJ Os08g0520300 OJ1003_A09.12 OsJ_27962 OSNPB_080520300 P0689E12.36,LOC_Os11g40510 Os11g0620100 OsJ_34666 OSNPB_110620100,P0616D06.127-1 Os07g0615400 OsJ_25126 OSNPB_070615400,Os11g0620100 OSNPB_110620100,Os07g0615400 OSNPB_070615400 ENOG411EM2U RBG8 Q03251 RBG8_ARATH Glycine-rich RNA-binding protein 8 (AtGR-RBP8) (AtRBG8) (Glycine-rich protein 8) (AtGRP8) (Protein COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1) (Protein CCR1) FUNCTION: Plays a role in RNA transcription or processing during stress. Binds RNAs and DNAs sequence with a preference to single-stranded nucleic acids. Involved in mRNA alternative splicing of numerous targets by modulating splice site selection. Negatively regulates the circadian oscillations of its own transcript as well as RBG7 transcript. Forms an interlocked post-transcriptional negative feedback loop with the RBG7 autoregulatory circuit. Both proteins negatively autoregulate and reciprocally crossregulate by binding to their pre-mRNAs and promoting unproductive splicing coupled to degradation via the NMD pathway. Target of the Pseudomonas syringae type III effector HopU1. {ECO:0000269|PubMed:18987006, ECO:0000269|PubMed:19527663, ECO:0000269|PubMed:23042250}. 16579 Glycine-rich RNA-binding protein 8 (AtGR-RBP8) (AtRBG8) (Glycine-rich protein 8) (AtGRP8) (Protein COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1) (Protein CCR1) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; nucleolus [GO:0005730]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; alternative mRNA splicing, via spliceosome [GO:0000380]; innate immune response [GO:0045087]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:7513083}. locus:2136298; AT4G39260 Glycine-rich RNA-binding protein NA NA NA NA NA NA NA ENOG411EM2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA kDa ribonucleoprotein NA NA NA NA NA NA NA ENOG411EM2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0117100 protein (Putative RNA-binding protein RNP-D) (cDNA clone:J013058B07, full insert sequence) Q69UI3 Q69UI3_ORYSJ Os08g0117100 Os08g0117100 OSNPB_080117100 P0470F10.16 ENOG411EM2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA arginine serine-rich splicing factor NA NA NA NA NA NA NA ENOG411EM2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os05g0105900 protein (cDNA clone:001-121-A12, full insert sequence) Q65XI3 Q65XI3_ORYSJ Os05g0105900 Os05g0105900 OSJNBb0035J08.10 OSNPB_050105900 ENOG411EM2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os03g0376600 protein (Putative ribonucleoprotein) (RNA recognition motif family protein, expressed) (cDNA clone:006-303-G07, full insert sequence) (cDNA clone:J013169L09, full insert sequence) Q10KP0 Q10KP0_ORYSJ LOC_Os03g25960 Os03g0376600 OsJ_11032 OSJNBb0048D20.12 OSNPB_030376600 ENOG411EM2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31 kDa ribonucleoprotein NA NA NA NA NA NA NA ENOG411EM2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0557100 protein (Fragment),Os08g0557100 protein (Putative nucleic acid-binding protein) (cDNA clone:J023062K14, full insert sequence) Q0J3S0,Q6ZJ16 Q0J3S0_ORYSJ,Q6ZJ16_ORYSJ Os08g0557100 Os08g0557100 OSNPB_080557100,OJ1150_A11.19-2 Os08g0557100 OsJ_28256 OSNPB_080557100 ENOG411EM2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os10g0321700 protein (RNA recognition motif family protein, expressed) Q109W0 Q109W0_ORYSJ Os10g0321700 LOC_Os10g17454 Os10g0321700 OSNPB_100321700 ENOG411E520 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411E521 MRG7.21 Q6NNK6,Q9FK46 Q6NNK6_ARATH,Q9FK46_ARATH AT3G04040 protein (At3g04040) (Transmembrane protein),At5g18250 (Dbj|BAA90342.1) (Transmembrane protein) 14401,14127 AT3G04040 protein (At3g04040) (Transmembrane protein),At5g18250 (Dbj|BAA90342.1) (Transmembrane protein) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] locus:2095943;,locus:2172399; AT3G04040,AT5G18250 NA Os01g0264500 protein (cDNA clone:001-104-C10, full insert sequence) Q9LDB3 Q9LDB3_ORYSJ Os01g0264500 Os01g0264500 OsJ_01207 OSNPB_010264500 P0453A06.25 P0499C11.7 ENOG411E522 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Monothiol glutaredoxin-S9 P0C291 GRXS9_ORYSJ GRXS9 Os05g0563900 LOC_Os05g48930 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411E524 A0A1I9LNV2,Q9LVP5,F4J1T2 A0A1I9LNV2_ARATH,Q9LVP5_ARATH,F4J1T2_ARATH KxDL motif protein 10505,13680,19616 KxDL motif protein locus:2094637; AT3G29130 Uncharacterized conserved protein Expressed protein (Os03g0640400 protein) (cDNA clone:J013126D04, full insert sequence) Q6ASS9 Q6ASS9_ORYSJ Os03g0640400 LOC_Os03g43910 Os03g0640400 B1394A07.12 OsJ_11860 OSNPB_030640400 ENOG411E525 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os09g0469300 protein Q6K4A7 Q6K4A7_ORYSJ Os09g0469300 Os09g0469300 OJ1595_D08.10 OsJ_29699 OSNPB_090469300 P0676H02.28 ENOG411E526 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF740) Expressed protein (Os03g0189100 protein) (cDNA clone:J013087C18, full insert sequence) Q8H7N4 Q8H7N4_ORYSJ OJ1217B09.12 LOC_Os03g08970 Os03g0189100 OsJ_09713 OSNPB_030189100 ENOG411E527 CXXS1 Q8LDI5 CXXS1_ARATH Thioredoxin-like protein CXXS1 (AtCXXS1) (Mono-cysteine thioredoxin 1) FUNCTION: Possesses low disulfide reductase activity, but efficient protein disulfide isomerase activity. Does not possess deglutathionylation activity. {ECO:0000269|PubMed:18384502}. 13334 Thioredoxin-like protein CXXS1 (AtCXXS1) (Mono-cysteine thioredoxin 1) cytosol [GO:0005829]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide isomerase activity [GO:0003756]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18384502}. locus:2200141; AT1G11530 Thioredoxin Thioredoxin-like protein CXXS1 (OsCXXS1) (OsTrx15) Q0J9V5 CXXS1_ORYSJ Os04g0629500 LOC_Os04g53740 OsJ_16273 OSJNBa0089N06.15 ENOG411E528 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40s ribosomal protein NA NA NA NA NA NA NA ENOG411E529 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rare lipoprotein A (RlpA)-like double-psi beta-barrel NA NA NA NA NA NA NA ENOG411E52A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: post-GPI attachment to proteins 1 NA NA NA NA NA NA NA ENOG411E52B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os05g0512100 protein,Os05g0509800 protein (Fragment),Os05g0509600 protein C7J2B9,A0A0P0WPD5,A0A0P0WPB0 C7J2B9_ORYSJ,A0A0P0WPD5_ORYSJ,A0A0P0WPB0_ORYSJ Os05g0512100 Os05g0512100 OSNPB_050512100,Os05g0509800 OSNPB_050509800,Os05g0509600 OSNPB_050509600 ENOG411E52C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0485800 protein A0A0P0XVJ5 A0A0P0XVJ5_ORYSJ Os10g0485800 OSNPB_100485800 ENOG411E52E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) Os01g0257100 protein (Putative RALF) (cDNA, clone: J100046K16, full insert sequence) Q9SDJ5 Q9SDJ5_ORYSJ Os01g0257100 OsJ_01158 OSNPB_010257100 P0462H08.2 P0711E10.45 ENOG411E52F T8B10_40 Q9M221 Q9M221_ARATH Cotton fiber protein (Uncharacterized protein T8B10_40) 82639 Cotton fiber protein (Uncharacterized protein T8B10_40) integral component of membrane [GO:0016021] locus:2103381; AT3G60380 NA NA NA NA NA NA NA NA ENOG411E52G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome b5-like Heme/Steroid binding domain Os02g0649800 protein (Putative cytochrome b5) (cDNA clone:J013079M22, full insert sequence) Q6H3Z7 Q6H3Z7_ORYSJ Os02g0649800 OsJ_07729 OSJNBb0012J10.1 OSNPB_020649800 P0048B08.25 ENOG411E52H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family B1358B12.9 protein (OSJNBa0072F16.17 protein) (Os04g0462200 protein) (cDNA clone:002-116-A06, full insert sequence) Q7XTF1 Q7XTF1_ORYSJ Os04g0462200 B1358B12.9 OsJ_15071 OSJNBa0072F16.17 OSNPB_040462200 ENOG411E52J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0909500 protein (cDNA clone:J013116D08, full insert sequence),Os01g0909100 protein (Fragment) B7EPQ1,A0A0P0VBX6 B7EPQ1_ORYSJ,A0A0P0VBX6_ORYSJ Os01g0909500 OSNPB_010909500,Os01g0909100 OSNPB_010909100 ENOG411E52Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxygen evolving enhancer protein 3 (PsbQ) Os04g0522800 protein (cDNA clone:J013146P05, full insert sequence) Q0JBN1 Q0JBN1_ORYSJ Os04g0522800 Os04g0522800 OsJ_15503 OSNPB_040522800 ENOG411E52R Q9LJM5 Q9LJM5_ARATH At3g19690 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (Pathogenesis-related protein-like) 17809 At3g19690 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (Pathogenesis-related protein-like) extracellular region [GO:0005576] locus:2091196; AT3G19690 SCP NA NA NA NA NA NA NA ENOG411E52S WRKY51 Q93WU9 WRK51_ARATH Probable WRKY transcription factor 51 (WRKY DNA-binding protein 51) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21030507}. FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. 22044 Probable WRKY transcription factor 51 (WRKY DNA-binding protein 51) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; jasmonic acid mediated signaling pathway [GO:0009867]; transcription, DNA-templated [GO:0006351] locus:2177639; AT5G64810 WRKY transcription factor NA NA NA NA NA NA NA ENOG411E52T Q8GWR8 Q8GWR8_ARATH At4g31270 (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At4g31270/F8F16_90) 33369 At4g31270 (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At4g31270/F8F16_90) histone acetyltransferase complex [GO:0000123]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA demethylation [GO:0080111]; regulation of chromatin silencing [GO:0031935]; regulation of transcription, DNA-templated [GO:0006355] locus:2128186; AT4G31270 NA Os02g0174300 protein A0A0N7KES5 A0A0N7KES5_ORYSJ Os02g0174300 OSNPB_020174300 ENOG411E52V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E52Y Q9SK46 Q9SK46_ARATH At2g24860/F27C12.22 (DnaJ/Hsp40 cysteine-rich domain superfamily protein) (Expressed protein) (Tsi1-interacting protein TSIP1) (Uncharacterized protein At2g24861) 15466 At2g24860/F27C12.22 (DnaJ/Hsp40 cysteine-rich domain superfamily protein) (Expressed protein) (Tsi1-interacting protein TSIP1) (Uncharacterized protein At2g24861) heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] locus:2047426; AT2G24860 NA Os09g0423700 protein (Putative Tsi1-interacting protein TSIP1) (cDNA clone:001-023-G05, full insert sequence) Q69QJ6 Q69QJ6_ORYSJ Os09g0423700 OSNPB_090423700 P0418B08.20 ENOG411EM22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM NA NA NA NA NA NA NA ENOG411EM24 CP31A,CP31B Q04836,Q9FGS0 CP31A_ARATH,CP31B_ARATH 31 kDa ribonucleoprotein, chloroplastic (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein CP31A) (RNA-binding protein RNP-T) (RNA-binding protein cp31),RNA-binding protein CP31B, chloroplastic DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit multiple specific editing defects in chloroplast transcripts (PubMed:19297624, PubMed:23110894). Mutant plants have increased sensitivity to cold stress (PubMed:23110894). {ECO:0000269|PubMed:19297624, ECO:0000269|PubMed:23110894}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit multiple specific editing defects in chloroplast transcripts. {ECO:0000269|PubMed:19297624}. defective in RNA editing; defective in postillumination reduction of the plastoquinone pool; FUNCTION: Required for specific RNA editing events in chloroplasts and stabilizes specific chloroplast mRNAs. Associates with the 3'-terminus ndhF mRNAs and protects them against 3'-exonucleolytic degradation (PubMed:19297624, PubMed:23110894). Required for normal chloroplast development under cold stress conditions by stabilizing transcripts of numerous mRNAs under these conditions (PubMed:23110894). May modulate telomere replication through RNA binding domains (PubMed:14703514). {ECO:0000269|PubMed:14703514, ECO:0000269|PubMed:19297624, ECO:0000269|PubMed:23110894}.,FUNCTION: Required for specific RNA editing events in chloroplasts and stabilizes specific chloroplast mRNAs (PubMed:19297624). 35787,31869 31 kDa ribonucleoprotein, chloroplastic (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein CP31A) (RNA-binding protein RNP-T) (RNA-binding protein cp31),RNA-binding protein CP31B, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; intracellular ribonucleoprotein complex [GO:0030529]; thylakoid [GO:0009579]; mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]; base conversion or substitution editing [GO:0016553]; cold acclimation [GO:0009631]; innate immune response [GO:0045087]; mRNA processing [GO:0006397]; response to cold [GO:0009409]; RNA modification [GO:0009451]; RNA processing [GO:0006396]; RNA stabilization [GO:0043489],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; innate immune response [GO:0045087]; mRNA processing [GO:0006397]; RNA modification [GO:0009451] locus:2122009;,locus:2157702; AT4G24770,AT5G50250 RNA-binding protein Os09g0565200 protein (Putative nucleic acid-binding protein) (cDNA clone:001-034-H01, full insert sequence) (cDNA clone:J023007A14, full insert sequence),Os09g0106200 protein (Fragment) Q650W6,Q0J3J0 Q650W6_ORYSJ,Q0J3J0_ORYSJ Os09g0565200 Os09g0565200 OsJ_30367 OSJNBa0042B15.31 OSJNBa0070E11.5 OSNPB_090565200,Os09g0106200 OSNPB_090106200 ENOG411EM25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411DRNE AGD2 Q9C5B9,F4HPY8,Q93ZN2,Q9ASZ9,O22707,Q84M96,A0A1P8AWQ7,A0A1P8AWD7,A0A1P8AWH3 ALKR1_ARATH,ALKR6_ARATH,ALKR4_ARATH,ALKR5_ARATH,ALKR3_ARATH,ALKR2_ARATH,A0A1P8AWQ7_ARATH,A0A1P8AWD7_ARATH,A0A1P8AWH3_ARATH Probable aldo-keto reductase 1 (EC 1.1.1.-),Probable aldo-keto reductase 6 (EC 1.1.1.-),Probable aldo-keto reductase 4 (EC 1.1.1.-),Probable aldo-keto reductase 5 (EC 1.1.1.-),Probable aldo-keto reductase 3 (EC 1.1.1.-),Probable aldo-keto reductase 2 (EC 1.1.1.-) (ARF-GAP domain-containing protein 2),NAD(P)-linked oxidoreductase superfamily protein ARA:AT1G10810-MONOMER;,ARA:AT1G60710-MONOMER;,ARA:AT1G60730-MONOMER;,ARA:AT1G60690-MONOMER;,ARA:AT1G60680-MONOMER; 1.1.1.- 37596,36352,37925,37857,38161,38269,27035,27841,32470 Probable aldo-keto reductase 1 (EC 1.1.1.-),Probable aldo-keto reductase 6 (EC 1.1.1.-),Probable aldo-keto reductase 4 (EC 1.1.1.-),Probable aldo-keto reductase 5 (EC 1.1.1.-),Probable aldo-keto reductase 3 (EC 1.1.1.-),Probable aldo-keto reductase 2 (EC 1.1.1.-) (ARF-GAP domain-containing protein 2),NAD(P)-linked oxidoreductase superfamily protein oxidoreductase activity [GO:0016491],cytosol [GO:0005829]; oxidoreductase activity [GO:0016491]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; oxidoreductase activity [GO:0016491],chloroplast envelope [GO:0009941]; plasma membrane [GO:0005886]; oxidoreductase activity [GO:0016491] locus:2196446;,locus:2036551;,locus:2036504;,locus:2036515;,locus:2036611;,locus:2036591; AT1G10810,AT1G60750,AT1G60710,AT1G60730,AT1G60690,AT1G60680 auxin-induced protein Probable aldo-keto reductase 1 (EC 1.1.1.-),Probable aldo-keto reductase 2 (EC 1.1.1.-),Auxin-induced protein PCNT115, putative, expressed (Os10g0419100 protein) (cDNA clone:002-107-H09, full insert sequence),Os04g0338100 protein (Fragment),Os04g0341100 protein,Os01g0618100 protein (Putative auxin-induced protein),Os04g0337500 protein (Fragment),Os04g0337800 protein Q0JE32,Q7XT99,Q338B1,Q0JE28,A3ASJ2,Q5ZBH8,A0A0P0W8M8,A0A0P0W8U8 AKR1_ORYSJ,AKR2_ORYSJ,Q338B1_ORYSJ,Q0JE28_ORYSJ,A3ASJ2_ORYSJ,Q5ZBH8_ORYSJ,A0A0P0W8M8_ORYSJ,A0A0P0W8U8_ORYSJ Os04g0337500 LOC_Os04g26870 OsJ_14313 OSJNBa0008A08.8,Os04g0338000 LOC_Os04g26910 OsJ_14315 OSJNBa0008A08.11 OSJNBa0032I19.2,Os10g0419100 LOC_Os10g28320 OSNPB_100419100,Os04g0338100 Os04g0338100 OSNPB_040338100,Os04g0341100 OsJ_14328 OSNPB_040341100,Os01g0618100 B1040D09.1 OsJ_02625 OSNPB_010618100,Os04g0337500 OSNPB_040337500,Os04g0337800 OSNPB_040337800 ENOG411DRNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif Os05g0541100 protein Q0DGC3 Q0DGC3_ORYSJ Os05g0541100 Os05g0541100 OsJ_19389 OSNPB_050541100 ENOG411DRNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 Os03g0600600 protein (Fragment),Os01g0941500 protein A0A0P0W076,A0A0P0VCS5 A0A0P0W076_ORYSJ,A0A0P0VCS5_ORYSJ Os03g0600600 OSNPB_030600600,Os01g0941500 OSNPB_010941500 ENOG411DRNM Q9SB68 ADPRM_ARATH Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase (EC 3.6.1.13) (EC 3.6.1.16) (EC 3.6.1.53) (ADPRibase-Mn) (CDP-choline phosphohydrolase) When grown on plates containing 250 ;M NO3- as the sole source of available N for 10 days mutant plants grew poorly shoot growth being particularly affected. Roots and shoots accumulated significantly less NO3- than wild type. Nitrate influx into roots of mutant plants was reduced. FUNCTION: Hydrolyzes ADP-ribose, IDP-ribose, CDP-glycerol, CDP-choline and CDP-ethanolamine, but not other non-reducing ADP-sugars or CDP-glucose. {ECO:0000250}. R-ATH-2393930; 3.6.1.13; 3.6.1.16; 3.6.1.53 34737 Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase (EC 3.6.1.13) (EC 3.6.1.16) (EC 3.6.1.53) (ADPRibase-Mn) (CDP-choline phosphohydrolase) ADP-ribose diphosphatase activity [GO:0047631]; CDP-glycerol diphosphatase activity [GO:0047734]; metal ion binding [GO:0046872] AT4G24730 manganese-dependent ADP-ribose CDP-alcohol diphosphatase-like Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase (EC 3.6.1.13) (EC 3.6.1.16) (EC 3.6.1.53) (ADPRibase-Mn) (CDP-choline phosphohydrolase),Calcineurin-like phosphoesterase family-like (Os08g0557200 protein),Os01g0258501 protein Q8H5F8,Q6ZJ14,A0A0P0V0N9 ADPRM_ORYSJ,Q6ZJ14_ORYSJ,A0A0P0V0N9_ORYSJ Os07g0688000 LOC_Os07g48840 OJ1150_E04.129 OJ1165_F02.106 OsJ_25650,Os08g0557200 Os08g0557200 OJ1150_A11.20 OsJ_34100 OSNPB_080557200,Os01g0258501 OSNPB_010258501 FUNCTION: Hydrolyzes ADP-ribose, IDP-ribose, CDP-glycerol, CDP-choline and CDP-ethanolamine, but not other non-reducing ADP-sugars or CDP-glucose. {ECO:0000250}. ENOG411DRNN F4HWB0 F4HWB0_ARATH Hydroxyproline-rich glycoprotein family protein 66204 Hydroxyproline-rich glycoprotein family protein cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2006717; AT1G14710 Hydroxyproline-rich glycoprotein family protein Hydroxyproline-rich glycoprotein family protein, putative, expressed (Os10g0116900 protein) (cDNA clone:J023051E10, full insert sequence),Hydroxyproline-rich glycoprotein family protein, putative, expressed (Os03g0238800 protein),Os10g0116900 protein (Fragment) Q33BD7,Q10PC8,A0A0P0XR64 Q33BD7_ORYSJ,Q10PC8_ORYSJ,A0A0P0XR64_ORYSJ OSJNBa0023I19.11 LOC_Os10g02760 Os10g0116900 OsJ_30537 OSNPB_100116900,Os03g0238800 LOC_Os03g13560 OSNPB_030238800,Os10g0116900 OSNPB_100116900 ENOG411DRNH APUM8,APUM12,APUM7,PUM12,PUM7 Q9LM20,Q9LVC3,Q9C9R6,A0A1P8BHG0,A0A1P8AT22 PUM8_ARATH,PUM12_ARATH,PUM7_ARATH,A0A1P8BHG0_ARATH,A0A1P8AT22_ARATH Putative pumilio homolog 8, chloroplastic (APUM-8) (AtPUM8),Pumilio homolog 12 (APUM-12) (AtPUM12),Putative pumilio homolog 7, chloroplastic (APUM-7) (AtPUM7),Pumilio 12,Pumilio 7 FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 58014,68671,73501,65166,73760 Putative pumilio homolog 8, chloroplastic (APUM-8) (AtPUM8),Pumilio homolog 12 (APUM-12) (AtPUM12),Putative pumilio homolog 7, chloroplastic (APUM-7) (AtPUM7),Pumilio 12,Pumilio 7 chloroplast [GO:0009507]; cytoplasm [GO:0005737]; RNA binding [GO:0003723]; regulation of translation [GO:0006417],cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; regulation of translation [GO:0006417],RNA binding [GO:0003723] locus:2015036;,locus:2167111;,locus:2194699; AT1G22240,AT5G56510,AT1G78160 pumilio homolog Os11g0579900 protein (Pumilio-family RNA binding repeat containing protein, expressed) (cDNA clone:J033091K07, full insert sequence),Os12g0493900 protein (Pumilio-family RNA binding repeat containing protein, expressed),Os12g0488900 protein (Pumilio-family RNA binding repeat containing protein, expressed) (cDNA clone:J023001H05, full insert sequence),Os03g0191700 protein (Pumilio-family RNA binding repeat containing protein, expressed) Q2R241,Q2QQH7,Q2QQM5,Q10QM3 Q2R241_ORYSJ,Q2QQH7_ORYSJ,Q2QQM5_ORYSJ,Q10QM3_ORYSJ LOC_Os11g37090 Os11g0579900 OsJ_34373 OSNPB_110579900,LOC_Os12g31000 Os12g0493900 OsJ_36154 OSNPB_120493900,Os12g0488900 LOC_Os12g30520 Os12g0488900 OsJ_36125 OSNPB_120488900,Os03g0191700 LOC_Os03g09150 Os03g0191700 OSNPB_030191700 ENOG411DRNI Q6NQ93 Q6NQ93_ARATH At3g26950 (Transmembrane protein) (Uncharacterized protein At3g26950) 61035 At3g26950 (Transmembrane protein) (Uncharacterized protein At3g26950) integral component of membrane [GO:0016021] locus:2092050; AT3G26950 NA Expressed protein (Os11g0507400 protein) Q2R3Q7 Q2R3Q7_ORYSJ LOC_Os11g31110 Os11g0507400 OSNPB_110507400 ENOG411DRNJ CUL3A,CUL3B Q9ZVH4,Q9C9L0 CUL3A_ARATH,CUL3B_ARATH Cullin-3A (AtCUL3a),Cullin-3B (AtCUL3b) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. Reduced sensitivity of the inhibition of hypocotyl growth in far-red light. Cul3a and cul3b double mutant is embryonic lethal (PubMed:16045478). {ECO:0000269|PubMed:15659098, ECO:0000269|PubMed:15772280, ECO:0000269|PubMed:16045478}.,DISRUPTION PHENOTYPE: No visible phenotype. Cul3a and cul3b double mutant is embryonic lethal (PubMed:16045478). {ECO:0000269|PubMed:15659098, ECO:0000269|PubMed:15772280, ECO:0000269|PubMed:16045478}. Mutants are virtually indistinguishable from wild-type siblings in the dark and in all light conditions both at seedling and mature stages.,Significant increase (five- to sixfold) in the total amount of CSN5 with respect to the CSN5 level observed in the csn5a-2 single mutant.,Mutant plants flowered slightly later than wild type and had a reduced sensitivity of the inhibition of hypocotyl growth in far-red light,No visible phenotype.,Arrest of embryogenesis occurred predominantly at heart stage. The following abnormalities were observed: premature or abnormal division of hypophyseal cell underdeveloped short suspensor abnormalities in procambial cell divisions abnormalities in protoderm formation underdeveloped endosperm with delayed cellularization.,Segregates about 17% embryo lethal. Embryos about around the transition stage. FUNCTION: Component of the cullin-RING ubiquitin ligases (CRL), or CUL3-RBX1-BTB protein E3 ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the CRL complex depends on the BTB domain-containing protein as the susbstrate recognition component. Involved in embryo pattern formation and endosperm development. Required for the normal division and organization of the root stem cells and columella root cap cells. Regulates primary root growth by an unknown pathway, but in an ethylene-dependent manner. Functions in distal root patterning, by an ethylene-independent mechanism. Functionally redundant with CUL3B. {ECO:0000269|PubMed:15659098, ECO:0000269|PubMed:15772280, ECO:0000269|PubMed:16045478, ECO:0000269|PubMed:19132085}.,FUNCTION: Component of the cullin-RING ubiquitin ligases (CRL), or CUL3-RBX1-BTB protein E3 ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the CRL complex depends on the BTB domain-containing protein as the susbstrate recognition component. Involved in embryo pattern formation and endosperm development. Required for the normal division and organization of the root stem cells and columella root cap cells. Regulates primary root growth by an unknown pathway, but in an ethylene-dependent manner. Functions in distal root patterning, by an ethylene-independent mechanism. Functionally redundant with CUL3A. {ECO:0000269|PubMed:15659098, ECO:0000269|PubMed:15772280, ECO:0000269|PubMed:16045478, ECO:0000269|PubMed:19132085}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-4641258;R-ATH-5632684;R-ATH-8951664; 85313,85610 Cullin-3A (AtCUL3a),Cullin-3B (AtCUL3b) cullin-RING ubiquitin ligase complex [GO:0031461]; cytosol [GO:0005829]; ubiquitin protein ligase binding [GO:0031625]; positive regulation of flower development [GO:0009911]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to red or far red light [GO:0009639],cullin-RING ubiquitin ligase complex [GO:0031461]; ubiquitin protein ligase binding [GO:0031625]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] DEVELOPMENTAL STAGE: Expressed during flower development in floral meristem, sepals, petals, developing carpels, growing integuments and tetrads of megaspores. In mature ovules, expressed in the cells of the embryo sac. Expressed in the sporogenous cells, tetrads of microspores and mature pollen in stamens After fertilization, expressed in the embryo and endosperm at the globular and heart stages. The progressively decreases during ovule development and is not observed in the developing seed coat. {ECO:0000269|PubMed:16045478}.,DEVELOPMENTAL STAGE: Expressed in developing and mature reproductive organs and during embryogenesis. {ECO:0000269|PubMed:16045478}. locus:2200670;,locus:2205020; AT1G26830,AT1G69670 cullin 3 Os02g0746000 protein (Putative cullin 3) (cDNA clone:J023079J03, full insert sequence),Os04g0642801 protein Q6YWY5,A3AXY3 Q6YWY5_ORYSJ,A3AXY3_ORYSJ Os02g0746000 OJ1118_G04.26 OsJ_08372 OSJNBb0024K03.4 OSNPB_020746000,Os04g0642801 OsJ_16377 OSNPB_040642801 ENOG411DRNK GPAT2,GPAT3 Q9FZ22,Q9SYJ2,A0A1P8B6E6 GPAT2_ARATH,GPAT3_ARATH,A0A1P8B6E6_ARATH Probable glycerol-3-phosphate acyltransferase 2 (AtGPAT2) (EC 2.3.1.15),Probable glycerol-3-phosphate acyltransferase 3 (AtGPAT3) (EC 2.3.1.15),Glycerol-3-phosphate acyltransferase 3 FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate, an essential step in glycerolipid biosynthesis. {ECO:0000250}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 1/3. ARA:AT1G02390-MONOMER;,ARA:AT4G01950-MONOMER; 2.3.1.15 59968,58762,62157 Probable glycerol-3-phosphate acyltransferase 2 (AtGPAT2) (EC 2.3.1.15),Probable glycerol-3-phosphate acyltransferase 3 (AtGPAT3) (EC 2.3.1.15),Glycerol-3-phosphate acyltransferase 3 integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; glycerol-3-phosphate O-acyltransferase activity [GO:0004366]; phosphatase activity [GO:0016791]; sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity [GO:0102420]; CDP-diacylglycerol biosynthetic process [GO:0016024]; cutin biosynthetic process [GO:0010143]; dephosphorylation [GO:0016311],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Weakly or not expressed in roots, leaves, seedlings, developing siliques and flower buds. {ECO:0000269|PubMed:12897259}.,TISSUE SPECIFICITY: Widely expressed at low level. Expressed at higher level in seedlings and leaves. {ECO:0000269|PubMed:12897259}. locus:2204818;,locus:2141410; AT1G02390,AT4G01950 glycerol-3-phosphate acyltransferase Os05g0280500 protein (Putative phospholipid/glycerol acyltransferase) (cDNA clone:002-183-E12, full insert sequence),Os01g0329000 protein,Acyltransferase family protein, expressed (Os03g0832800 protein) (cDNA clone:001-043-C05, full insert sequence),Os01g0299300 protein (Fragment),Os11g0679700 protein (Fragment),Os03g0832800 protein Q75IG9,Q0JN44,Q7Y144,A0A0P0V1E5,A0A0P0Y5A6,A0A0P0W5A8,A0A0P0W5K5 Q75IG9_ORYSJ,Q0JN44_ORYSJ,Q7Y144_ORYSJ,A0A0P0V1E5_ORYSJ,A0A0P0Y5A6_ORYSJ,A0A0P0W5A8_ORYSJ,A0A0P0W5K5_ORYSJ Os05g0280500 OSNPB_050280500 P0048F12.11,Os01g0329000 Os01g0329000 OSNPB_010329000,Os03g0832800 LOC_Os03g61720 Os03g0832800 OSJNBa0078D06.33 OSNPB_030832800,Os01g0299300 OSNPB_010299300,Os11g0679700 OSNPB_110679700,Os03g0832800 OSNPB_030832800 ENOG411DRNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0867200 protein (cDNA clone:J033032A03, full insert sequence) Q5N972 Q5N972_ORYSJ Os01g0867200 Os01g0867200 OSNPB_010867200 P0505D12.49 P0677H08.1 ENOG411DRNV TIL Q9FGT8 TIL_ARATH Temperature-induced lipocalin-1 (AtTIL1) DISRUPTION PHENOTYPE: Increased sensitivity to sudden drops in temperature and paraquat treatment. Dark-grown plants die shortly after transfer to light. These phenotypes are associated with an accumulation of hydrogen peroxide and other ROS, which causes an oxidative stress that leads to a reduction in hypocotyl growth and sensitivity to light (PubMed:18671872). Severe defects in basal (BT) and acquired thermotolerance (AT) leading to death within 7 days. Stronger sensitivity to tert-butyl hydroperoxide, a reagent that induces lipid peroxidation (PubMed:19302169). Stronger sensitivity to high salt levels (NaCl) associated with membrane injury, chlorophyll b degradation and accumulation of chloride and sodium in chloroplasts (PubMed:20959419, PubMed:24028869). When associated with disruption in CHL, highly sensitive to temperature, drought and light stresses than the single mutants, exhibiting intense lipid peroxidation. Seeds of this double mutant are very sensitive to natural and artificial aging, associated with the oxidation of polyunsaturated lipids (PubMed:23837879). {ECO:0000269|PubMed:18671872, ECO:0000269|PubMed:19302169, ECO:0000269|PubMed:20959419, ECO:0000269|PubMed:23837879, ECO:0000269|PubMed:24028869}. defect in basal and acquired thermotolerance Sensitive to high temperature-Y. Charng-2009 FUNCTION: Involved in basal (BT) and acquired thermotolerance (AT), probably by preventing plasma membrane lipids peroxidation induced by severe heat-shock (HS) (PubMed:19302169, PubMed:23837879). Lipocalin that confers protection against oxidative stress caused by heat, freezing, paraquat and light (PubMed:18671872, PubMed:19302169). Confers resistance to high salt (NaCl) levels, probably by protecting chloroplasts from ion toxicity via ion homeostasis maintenance (PubMed:20959419, PubMed:24028869). Required for seed longevity by insuring polyunsaturated lipids integrity (PubMed:23837879). {ECO:0000269|PubMed:18671872, ECO:0000269|PubMed:19302169, ECO:0000269|PubMed:20959419, ECO:0000269|PubMed:23837879, ECO:0000269|PubMed:24028869}. ARA:GQT-1847-MONOMER; 21434 Temperature-induced lipocalin-1 (AtTIL1) chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; nutrient reservoir activity [GO:0045735]; transporter activity [GO:0005215]; cellular chloride ion homeostasis [GO:0030644]; cellular sodium ion homeostasis [GO:0006883]; heat acclimation [GO:0010286]; hyperosmotic salinity response [GO:0042538]; lipid metabolic process [GO:0006629]; positive regulation of response to oxidative stress [GO:1902884]; positive regulation of response to salt stress [GO:1901002]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to freezing [GO:0050826]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to light stimulus [GO:0009416]; response to paraquat [GO:1901562]; response to water deprivation [GO:0009414]; seed maturation [GO:0010431] TISSUE SPECIFICITY: Expressed ubiquitously at similar levels, except in dry seeds (at protein level) (PubMed:18671872, PubMed:19302169). Present in seeds (PubMed:23837879). {ECO:0000269|PubMed:18671872, ECO:0000269|PubMed:19302169, ECO:0000269|PubMed:23837879}. locus:2155831; AT5G58070 temperature-induced Os08g0440100 protein (Putative temperature stress-induced lipocalin) (cDNA clone:J013155M04, full insert sequence),Os02g0612900 protein (Putative emperature stress-induced lipocalin) (cDNA clone:J023078B21, full insert sequence),Os08g0440150 protein Q6Z9F9,Q6K623,A0A0P0XGM4 Q6Z9F9_ORYSJ,Q6K623_ORYSJ,A0A0P0XGM4_ORYSJ Os08g0440100 OsJ_27468 OSNPB_080440100 P0524F03.30 P0528B09.3,Os02g0612900 Os02g0612900 OJ1004_A05.35 OsJ_07507 OSNPB_020612900,Os08g0440150 OSNPB_080440150 ENOG411DRNP CYFBP Q9MA79 F16P2_ARATH Fructose-1,6-bisphosphatase, cytosolic (FBPase) (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (Protein FRUCTOSE INSENSITIVE 1) DISRUPTION PHENOTYPE: Slight decreased in growth rate. {ECO:0000269|PubMed:25743161}. FUNCTION: Catalyzes the first irreversible reaction from fructose-1,6-bisphosphate to fructose-6-phosphate and inorganic phosphate and plays an important regulatory role in sucrose biosynthesis and metabolism (Probable). Its activity is essential to regulate starch levels (PubMed:25743161). Functions in fructose-mediated signaling independently of its catalytic activity in sugar metabolism. May act downstream of ABA2/GIN1, which is involved in abscisic acid (ABA) synthesis to regulate autotrophic transition and modulate early seedling establishment after seed germination (PubMed:21253566). {ECO:0000269|PubMed:21253566, ECO:0000269|PubMed:25743161, ECO:0000305|PubMed:10998187, ECO:0000305|PubMed:22297909}. MISCELLANEOUS: In plants there are two FBPase isozymes: one in the cytosol and the other in the chloroplast. {ECO:0000305}. ARA:AT1G43670-MONOMER;MetaCyc:AT1G43670-MONOMER; R-ATH-70263; 3.1.3.11 37287 Fructose-1,6-bisphosphatase, cytosolic (FBPase) (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (Protein FRUCTOSE INSENSITIVE 1) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; fructose 1,6-bisphosphate 1-phosphatase activity [GO:0042132]; metal ion binding [GO:0046872]; fructose 1,6-bisphosphate metabolic process [GO:0030388]; fructose 6-phosphate metabolic process [GO:0006002]; fructose metabolic process [GO:0006000]; gluconeogenesis [GO:0006094]; photosynthesis [GO:0015979]; response to abscisic acid [GO:0009737]; response to fructose [GO:0009750]; starch catabolic process [GO:0005983]; sucrose biosynthetic process [GO:0005986] locus:2031103; AT1G43670 K03841 fructose-16-bisphosphatase I EC 3.1.3.11 Fructose-1,6-bisphosphatase, cytosolic (FBPase) (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (Protein MONOCULM 2),Os05g0438600 protein (Fragment) Q0JHF8,A0A0P0WMW5 F16P2_ORYSJ,A0A0P0WMW5_ORYSJ CFBP1 FBP1 MOC2 Os01g0866400 LOC_Os01g64660 P0505D12.36,Os05g0438600 OSNPB_050438600 DISRUPTION PHENOTYPE: Reduced tiller numbers, pale-green leaves, reduced growth rate and dwarf phenotype. {ECO:0000269|Ref.8}. FUNCTION: Catalyzes the first irreversible reaction from fructose-1,6-bisphosphate to fructose-6-phosphate and inorganic phosphate and plays an important regulatory role in sucrose biosynthesis and metabolism. Required for sucrose supply and tiller bud outgrowth. {ECO:0000269|Ref.8}. MISCELLANEOUS: In plants there are two FBPase isozymes: one in the cytosol and the other in the chloroplast. ENOG411DRNQ XTH9 Q8LDW9,F4JI68 XTH9_ARATH,F4JI68_ARATH Xyloglucan endotransglucosylase/hydrolase protein 9 (At-XTH9) (XTH-9) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Involved in internodal cell elongation. {ECO:0000269|PubMed:12856951}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ARA:AT4G03210-MONOMER; 2.4.1.207 33141,29953 Xyloglucan endotransglucosylase/hydrolase protein 9 (At-XTH9) (XTH-9) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Highly expressed in shoot apices. In the vegetative and reproductive phases, it accumulates in the shoot apex region, where cell division is most active. In the reproductive phase, it is also expressed in flower buds, flower stalks and internodes bearing flowers. {ECO:0000269|PubMed:11673616, ECO:0000269|PubMed:12856951}. locus:2125437; AT4G03210 Xyloglucan endotransglucosylase hydrolase protein Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207),Os11g0235750 protein (Fragment) Q5JQW6,A0A0P0Y0M3 Q5JQW6_ORYSJ,A0A0P0Y0M3_ORYSJ Os04g0631200 OSJNBb0015D13.13 OSNPB_040631200,Os11g0235750 OSNPB_110235750 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DRNX COAC2,COAC1,CoA Carrier 2,CoA Carrier 1 F4JU70,F4HW79,A0A1P8B7M7,A0A1P8AQ47,A0A1P8AQ10 COAC2_ARATH,COAC1_ARATH,A0A1P8B7M7_ARATH,A0A1P8AQ47_ARATH,A0A1P8AQ10_ARATH Mitochondrial carrier protein CoAc2 (AtCoAc2) (Mitochondrial coenzyme A transporter CoAc2),Mitochondrial carrier protein CoAc1 (AtCoAc1) (Mitochondrial coenzyme A transporter CoAc1),Mitochondrial substrate carrier family protein FUNCTION: Required for the accumulation of coenzyme A in the mitochondrial matrix. {ECO:0000269|PubMed:23590975}. R-ATH-196783; 37093,36255,32529,26055,33696 Mitochondrial carrier protein CoAc2 (AtCoAc2) (Mitochondrial coenzyme A transporter CoAc2),Mitochondrial carrier protein CoAc1 (AtCoAc1) (Mitochondrial coenzyme A transporter CoAc1),Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; coenzyme A transmembrane transporter activity [GO:0015228]; mitochondrial coenzyme A transmembrane transport [GO:1990559],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ADP transmembrane transporter activity [GO:0015217]; AMP transmembrane transporter activity [GO:0080122]; coenzyme A transmembrane transporter activity [GO:0015228]; ADP transport [GO:0015866]; mitochondrial coenzyme A transmembrane transport [GO:1990559]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed throughout the plant. {ECO:0000269|PubMed:23590975}. locus:2120878;,locus:2204513; AT4G26180,AT1G14560 mitochondrial substrate carrier family protein Mitochondrial carrier protein-like (Os01g0571000 protein),Graves disease mitochondrial solute carrier protein-like (Os01g0708900 protein) (cDNA clone:J013050L21, full insert sequence),Os02g0226300 protein,Os07g0422800 protein Q656X5,Q5NAJ0,Q8S1A3,A0A0P0VGN9,A0A0P0X501 Q656X5_ORYSJ,Q5NAJ0_ORYSJ,Q8S1A3_ORYSJ,A0A0P0VGN9_ORYSJ,A0A0P0X501_ORYSJ B1114B07.36-2 Os01g0571000 OsJ_02284 OSNPB_010571000,Os01g0708900 OsJ_03205 OSNPB_010708900 P0456F08.4,B1114B07.36-1 Os01g0571000 OSNPB_010571000,Os02g0226300 OSNPB_020226300,Os07g0422800 OSNPB_070422800 ENOG411DRNY LRR-RLK Q9FHM8,O22138 Q9FHM8_ARATH,O22138_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor-like protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase) 74752,75346 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor-like protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor-like protein kinase) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2153097;,locus:2050877; AT5G51560,AT2G45340 Leucine-rich repeat Os08g0117700 protein (Putative SERK1 protein),Os06g0134700 protein (Fragment) Q69UH7,Q0DEU2 Q69UH7_ORYSJ,Q0DEU2_ORYSJ Os08g0117700 Os08g0117700 OSNPB_080117700 P0470F10.23,Os06g0134700 Os06g0134700 OSNPB_060134700 ENOG411DRNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase Os06g0314600 protein (Putative S-adenosyl-L-methionine) (cDNA clone:J013105P13, full insert sequence),Os06g0329900 protein (Putative S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) (cDNA clone:J013159M15, full insert sequence),Os06g0315000 protein (Putative S-adenosyl-L-methionine),Os06g0313440 protein,Os06g0315300 protein Q5Z4A0,Q69UX7,Q5Z496,A0A0P0WVT4,A0A0P0WW24 Q5Z4A0_ORYSJ,Q69UX7_ORYSJ,Q5Z496_ORYSJ,A0A0P0WVT4_ORYSJ,A0A0P0WW24_ORYSJ Os06g0314600 OSNPB_060314600 P0734C01.25,Os06g0329900 OJ1230_H04.20 OsJ_21194 OSNPB_060329900,Os06g0315000 B1156C07.3 OSNPB_060315000 P0734C01.34,Os06g0313440 OSNPB_060313440,Os06g0315300 OSNPB_060315300 ENOG411DRN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DRN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Triacylglycerol Lipase NA NA NA NA NA NA NA ENOG411DRN6 F4KBY0,Q3E9X5,F4JNI3 GAOXL_ARATH,Q3E9X5_ARATH,F4JNI3_ARATH Gibberellin 20-oxidase-like protein (EC 1.14.11.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein DISRUPTION PHENOTYPE: Longer root hairs under Pi-deficient conditions. {ECO:0000269|PubMed:21248074}. FUNCTION: Negative regulator of root hair growth. {ECO:0000305|PubMed:21248074}. ARA:AT5G51310-MONOMER; 1.14.11.- 37125,23627,36794 Gibberellin 20-oxidase-like protein (EC 1.14.11.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; root hair elongation [GO:0048767],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Highly expressed in elongation zone of lateral roots. {ECO:0000305|PubMed:21248074}. locus:2176237;,locus:2121671; AT5G51310,AT4G23340 gibberellin NA NA NA NA NA NA NA ENOG411DRN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411DRN0 Q8GXH4,A0A1P8AY82 Q8GXH4_ARATH,A0A1P8AY82_ARATH Major facilitator superfamily protein (Uncharacterized protein At2g23095),Major facilitator superfamily protein 50404,42612 Major facilitator superfamily protein (Uncharacterized protein At2g23095),Major facilitator superfamily protein integral component of membrane [GO:0016021]; molybdate ion transmembrane transporter activity [GO:0015098] locus:1005716655; AT2G23093 major facilitator superfamily domain-containing protein 5-like Os08g0113800 protein B9FYR6 B9FYR6_ORYSJ Os08g0113800 OsJ_25809 OSNPB_080113800 ENOG411DRN1 SAM1,METK4,SAM2,METK3 P23686,Q9LUT2,P17562,Q9SJL8 METK1_ARATH,METK4_ARATH,METK2_ARATH,METK3_ARATH S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1),S-adenosylmethionine synthase 4 (AdoMet synthase 4) (EC 2.5.1.6) (Methionine adenosyltransferase 4) (MAT 4),S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2),S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3) Elevated methionine levels-M. Tarczynski-2002 FUNCTION: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The reaction comprises two steps that are both catalyzed by the same enzyme: formation of S-adenosylmethionine (AdoMet) and triphosphate, and subsequent hydrolysis of the triphosphate. {ECO:0000269|PubMed:16365035}.,FUNCTION: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The reaction comprises two steps that are both catalyzed by the same enzyme: formation of S-adenosylmethionine (AdoMet) and triphosphate, and subsequent hydrolysis of the triphosphate. {ECO:0000250|UniProtKB:Q96551}.,FUNCTION: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The reaction comprises two steps that are both catalyzed by the same enzyme: formation of S-adenosylmethionine (AdoMet) and triphosphate, and subsequent hydrolysis of the triphosphate (PubMed:12087191, PubMed:16365035). Involved in the biosynthesis of lignin (PubMed:11844113). {ECO:0000269|PubMed:11844113, ECO:0000269|PubMed:12087191, ECO:0000269|PubMed:16365035}. PATHWAY: Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1. {ECO:0000269|PubMed:16365035}.,PATHWAY: Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1. {ECO:0000250|UniProtKB:Q96551}.,PATHWAY: Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1. {ECO:0000269|PubMed:12087191, ECO:0000269|PubMed:16365035}. ARA:AT1G02500-MONOMER;MetaCyc:AT1G02500-MONOMER;,ARA:AT3G17390-MONOMER;,ARA:AT4G01850-MONOMER;,ARA:AT2G36880-MONOMER; R-ATH-156581;R-ATH-1614635;R-ATH-2408508; 2.5.1.6 43158,42796,43255,42497 S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1),S-adenosylmethionine synthase 4 (AdoMet synthase 4) (EC 2.5.1.6) (Methionine adenosyltransferase 4) (MAT 4),S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2),S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3) cell wall [GO:0005618]; cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; methionine adenosyltransferase activity [GO:0004478]; cellular response to iron ion [GO:0071281]; ethylene biosynthetic process [GO:0009693]; one-carbon metabolic process [GO:0006730]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; S-adenosylmethionine biosynthetic process [GO:0006556],cell wall [GO:0005618]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; methionine adenosyltransferase activity [GO:0004478]; mRNA binding [GO:0003729]; lignin biosynthetic process [GO:0009809]; methionine metabolic process [GO:0006555]; one-carbon metabolic process [GO:0006730]; response to cold [GO:0009409]; S-adenosylmethionine biosynthetic process [GO:0006556],cell wall [GO:0005618]; cytosol [GO:0005829]; extracellular exosome [GO:0070062]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; methionine adenosyltransferase activity [GO:0004478]; cellular response to iron ion [GO:0071281]; one-carbon metabolic process [GO:0006730]; response to cytokinin [GO:0009735]; S-adenosylmethionine biosynthetic process [GO:0006556],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; methionine adenosyltransferase activity [GO:0004478]; lignin biosynthetic process [GO:0009809]; one-carbon metabolic process [GO:0006730]; pollen tube growth [GO:0009860]; S-adenosylmethionine biosynthetic process [GO:0006556] TISSUE SPECIFICITY: Highly expressed in stems and roots. {ECO:0000269|PubMed:2482229}.,TISSUE SPECIFICITY: Trichomes. {ECO:0000269|PubMed:15276459}.,TISSUE SPECIFICITY: Pollen (at protein level). {ECO:0000269|PubMed:16242667, ECO:0000269|PubMed:16247729}. locus:2196160;,locus:2089070;,locus:2141385;,locus:2058011; AT1G02500,AT3G17390,AT4G01850,AT2G36880 Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3),S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2),S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1),Os01g0207300 protein (Putative S-adenosyl methionine synthetase),Os07g0477250 protein Q9LGU6,P93438,Q0DKY4,Q8LRJ3,A0A0P0X5U4 METK3_ORYSJ,METK2_ORYSJ,METK1_ORYSJ,Q8LRJ3_ORYSJ,A0A0P0X5U4_ORYSJ METK3 Os01g0293000 LOC_Os01g18860 OsJ_001358 P0706B05.41,SAM2 SAMS2 Os01g0323600 LOC_Os01g22010 OSJNBa0011P19.8,SAM1 SAMS Os05g0135700 LOC_Os05g04510 OsJ_016271 P0519E07.14,Os01g0207300 Os01g0207300 OsJ_00819 OSJNBa0016I09.10 OSNPB_010207300,Os07g0477250 OSNPB_070477250 FUNCTION: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The reaction comprises two steps that are both catalyzed by the same enzyme: formation of S-adenosylmethionine (AdoMet) and triphosphate, and subsequent hydrolysis of the triphosphate. {ECO:0000250|UniProtKB:Q96551}. ENOG411DRN2 SBT2.3,SBT2.2,MFC16.21 Q9FI12,Q9SUN6,A0A1P8BHI3,A0A1P8BHH8 SBT23_ARATH,SBT22_ARATH,A0A1P8BHI3_ARATH,A0A1P8BHH8_ARATH Subtilisin-like protease SBT2.3 (EC 3.4.21.-) (Subtilase subfamily 2 member 3) (AtSBT2.3),Subtilisin-like protease SBT2.2 (EC 3.4.21.-) (Subtilase subfamily 2 member 2) (AtSBT2.2),Subtilase family protein ARA:AT5G44530-MONOMER;,ARA:AT4G20430-MONOMER; 3.4.21.- 90617,91815,67891,93466 Subtilisin-like protease SBT2.3 (EC 3.4.21.-) (Subtilase subfamily 2 member 3) (AtSBT2.3),Subtilisin-like protease SBT2.2 (EC 3.4.21.-) (Subtilase subfamily 2 member 2) (AtSBT2.2),Subtilase family protein extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252],serine-type endopeptidase activity [GO:0004252] locus:2163446;,locus:2128595; AT5G44530,AT4G20430 subtilase family Os01g0769200 protein (Putative meiotic serine proteinase) Q94EF5 Q94EF5_ORYSJ Os01g0769200 B1143G03.30 OsJ_03598 OSNPB_010769200 P0665A11.6 ENOG411DRN3 XRCC1 Q24JK4 XRCC1_ARATH DNA-repair protein XRCC1 (AtXRCC1) (Homolog of X-ray repair cross complementing 1) DISRUPTION PHENOTYPE: Reduced capacity to complete DNA demethylation initiated by ROS1. {ECO:0000269|PubMed:23316050}. Sensitive to gamma rays-C. White-2010 FUNCTION: Corrects defective DNA strand-break repair and sister chromatid exchange following treatment with ionizing radiation and alkylating agents (By similarity). Involved in DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation. {ECO:0000250|UniProtKB:P18887, ECO:0000269|PubMed:23316050}. 39838 DNA-repair protein XRCC1 (AtXRCC1) (Homolog of X-ray repair cross complementing 1) nucleus [GO:0005634]; double-stranded methylated DNA binding [GO:0010385]; DNA demethylation [GO:0080111]; DNA ligation [GO:0006266]; double-strand break repair via nonhomologous end joining [GO:0006303]; positive regulation of DNA-5-methylcytosine glycosylase activity [GO:1901972]; positive regulation of polynucleotide 3'-phosphatase activity [GO:1901969] locus:2198973; AT1G80420 BRCA1 C Terminus (BRCT) domain DNA repair protein XRCC1-like (Os06g0144000 protein) (X-ray repair cross complementing protein 1) Q5VQ75 Q5VQ75_ORYSJ xrcc1 Os06g0144000 OSJNBa0007O20.9 OSNPB_060144000 ENOG411DRN8 Q67XK9,O22787,A0A1P8ARL2,F4IVT6 Q67XK9_ARATH,O22787_ARATH,A0A1P8ARL2_ARATH,F4IVT6_ARATH At1g04490 (Uncharacterized protein At1g04490),At2g33360 (Cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527)) (Uncharacterized protein At2g33360),Uncharacterized protein,Cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) 44828,66507,40363,49797 At1g04490 (Uncharacterized protein At1g04490),At2g33360 (Cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527)) (Uncharacterized protein At2g33360),Uncharacterized protein,Cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) vacuole [GO:0005773] locus:2018299;,locus:2051109; AT1G04490,AT2G33360 expressed protein Expressed protein (Os03g0139200 protein) (cDNA clone:J013098N06, full insert sequence) (cDNA clone:J023027F09, full insert sequence) Q10S09 Q10S09_ORYSJ LOC_Os03g04600 Os03g0139200 OsJ_09342 OSNPB_030139200 ENOG411DRN9 ARC3 Q6F6B5 ARC3_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 DISRUPTION PHENOTYPE: Small number of abnormally large and heterogeneous chloroplasts sometimes exhibiting alteration in stromule length and frequency in non-green tissues (e.g. slightly increased stromule frequency in hypocotyl epidermal cells). {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:15356321, ECO:0000269|PubMed:17304239, ECO:0000269|PubMed:18764889}. Defective in chloroplast accumulation and division. Reduced number of chloroplasts and affected division plane in chloroplast biogenesis. Highly enlongated and multiple arrayed chloroplasts in developing green tissues. Mutant proteins do not form homodimers as wt proteins do and localize aberrantly inside chloroplasts. Few, large chloroplasts-R. Leech-1999 FUNCTION: Z-ring accessory protein involved in the initiation of plastid division and division site placement (might functionally replace bacterial MinC). May control the rate of chloroplast expansion. Seems to influence stromule (stroma-filled tubular extensions of the plastid envelope membrane) length and frequency. {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:15356321, ECO:0000269|PubMed:17304239, ECO:0000269|PubMed:18764889}. 82583 Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 chloroplast outer membrane [GO:0009707]; chloroplast stroma [GO:0009570]; extrinsic component of plastid membrane [GO:0035452]; GTPase activity [GO:0003924]; protein self-association [GO:0043621]; chloroplast fission [GO:0010020] locus:2027242; AT1G75010 accumulation and replication of chloroplasts Os09g0555600 protein Q0IZQ8 Q0IZQ8_ORYSJ Os09g0555600 OSNPB_090555600 ENOG411DSN7 BAN Q9SEV0 BAN_ARATH Anthocyanidin reductase (AtANR) (EC 1.3.1.77) (Anthocyanin spotted testa) (ast) (Protein BANYULS) Purple seed coats due to anthocyanin accumulation-M. Delseny-1999 FUNCTION: Involved in the biosynthesis of condensed tannins. Converts cyanidin into (-)-epicatechin as the major product. {ECO:0000269|PubMed:12532018, ECO:0000269|PubMed:14725861}. MISCELLANEOUS: Regulated by TRANSPARENT TESTA 2, TRANSPARENT TESTA 8 and TRANSPARENT TESTA GLABRA 1. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT1G61720-MONOMER; 1.3.1.77; 1.3.1.77 37906 Anthocyanidin reductase (AtANR) (EC 1.3.1.77) (Anthocyanin spotted testa) (ast) (Protein BANYULS) anthocyanidin reductase activity [GO:0033729]; coenzyme binding [GO:0050662]; oxidoreductase activity [GO:0016491]; flavonoid biosynthetic process [GO:0009813]; negative regulation of flavonoid biosynthetic process [GO:0009964] DEVELOPMENTAL STAGE: From fertilization until pre-globular embryo stage. TISSUE SPECIFICITY: Flowers and young siliques. Detected specifically in the endothelium of seed coat. {ECO:0000269|PubMed:10504561}. locus:2195733; AT1G61720 anthocyanidin reductase OSJNBa0089N06.22 protein (Os04g0630400 protein) (cDNA clone:J023133I21, full insert sequence),Os04g0630300 protein (cDNA clone:001-029-C03, full insert sequence),Os04g0630100 protein (cDNA clone:J013151C19, full insert sequence),Os04g0630800 protein (cDNA clone:J013104E10, full insert sequence),Os04g0631000 protein,Os04g0630900 protein (Fragment),Os04g0630600 protein,Os10g0477900 protein (Fragment) Q0J9U9,Q0J9V0,Q0J9V1,Q0J9U6,A0A0P0WFB9,A0A0N7KJR7,A0A0P0WF45,A0A0P0XVA5 Q0J9U9_ORYSJ,Q0J9V0_ORYSJ,Q0J9V1_ORYSJ,Q0J9U6_ORYSJ,A0A0P0WFB9_ORYSJ,A0A0N7KJR7_ORYSJ,A0A0P0WF45_ORYSJ,A0A0P0XVA5_ORYSJ Os04g0630400 Os04g0630400 OSJNBa0089N06.22 OSNPB_040630400,Os04g0630300 Os04g0630300 OSNPB_040630300,Os04g0630100 Os04g0630100 OSNPB_040630100,Os04g0630800 Os04g0630800 OSNPB_040630800,Os04g0631000 OSNPB_040631000,Os04g0630900 OSNPB_040630900,Os04g0630600 OSNPB_040630600,Os10g0477900 OSNPB_100477900 ENOG411E3U4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0844850 protein Q75LC2 Q75LC2_ORYSJ OSJNBa0032G11.20 Os03g0844850 LOC_Os03g62770 OSNPB_030844850 ENOG411E3U8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family HVA22-like protein,HVA22-like protein (Fragment) Q6YSC4,A0A0P0XGY5 Q6YSC4_ORYSJ,A0A0P0XGY5_ORYSJ P0104B02.43-1 P0470B03.14-1 Os08g0467500 OSNPB_080467500,Os08g0467500 OSNPB_080467500 ENOG411DSEM F4JC81,F4JC80 F4JC81_ARATH,F4JC80_ARATH WW domain-containing protein 84456,97569 WW domain-containing protein locus:2090064; AT3G13225 WW domain Os06g0298400 protein (WW domain-containing protein-like) Q5ZA54 Q5ZA54_ORYSJ Os06g0298400 OSNPB_060298400 P0501G08.3 ENOG411DYVB O04195,F4IG20 Y2992_ARATH,F4IG20_ARATH Uncharacterized protein At2g39920,HAD superfamily, subfamily IIIB acid phosphatase 32671,32584 Uncharacterized protein At2g39920,HAD superfamily, subfamily IIIB acid phosphatase integral component of membrane [GO:0016021]; response to cadmium ion [GO:0046686],integral component of membrane [GO:0016021] locus:2061201; AT2G39920 HAD superfamily subfamily IIIB (Acid phosphatase) NA NA NA NA NA NA NA ENOG411DYVE Q9FX59 Q9FX59_ARATH Expressed protein (Sodium/hydrogen exchanger (DUF1218)) (T6J4.13 protein) 20260 Expressed protein (Sodium/hydrogen exchanger (DUF1218)) (T6J4.13 protein) integral component of membrane [GO:0016021] locus:2009922; AT1G13380 fiber protein Fb34 Os09g0281300 protein (Putative fiber protein Fb34) (cDNA clone:006-205-E02, full insert sequence) (cDNA clone:J023131J22, full insert sequence) Q6H422 Q6H422_ORYSJ Os09g0281300 Os09g0281300 OsJ_28665 OSNPB_090281300 P0645D04.18 P0651G05.38 ENOG411DYVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os09g0251100 protein A0A0N7KQF2 A0A0N7KQF2_ORYSJ Os09g0251100 OSNPB_090251100 ENOG411DYVZ Q9LJL8 Q9LJL8_ARATH At3g19120/MVI11_3 (PIF / Ping-Pong family of plant transposase) 49418 At3g19120/MVI11_3 (PIF / Ping-Pong family of plant transposase) locus:2094088; AT3G19120 Plant transposon protein NA NA NA NA NA NA NA ENOG411E38E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Bet v I family Os04g0593400 protein A3AWZ0 A3AWZ0_ORYSJ Os04g0593400 OsJ_15989 OSNPB_040593400 ENOG411E38F MRPL11 Q9SVW7 Q9SVW7_ARATH At4g35490 (Mitochondrial ribosomal protein L11) (Ribosomal protein L11 homolog) (Ribosomal protein L11-like protein) Analysis of the mitochondrial electron transport chain revealed a marked and general decrease in the abundance of the protein complexes in mutant plants with respect to the wild type.,Impairment of mitochondrial gene expression without affecting photosynthesis.,Mutant plants are reduced in size and show a darker leaf coloration than the wild type.,Defective in both mitochondrial and plastid gene expression.,Double mutant leaves were identical to those of the prpl11-1 single mutant in terms of thylakoid protein composition and photosynthetic performance.,No increase in H2O2 content in light- or dark-adapted mutant plants.,Pale-green leaves and a drastic reduction in size.,The photosynthetic performance of the double mutant is identical to that of prpl11-1 plants (Fv/Fm 0.69 versus 0.79 in the wild type; ΦII 0.53 versus 0.75 in the wild type; 1-qP 0.06 versus 0.05 in the wild type).,prors1-like transcriptional response. Semi-dwarf; Dark green leaves-D. Leister-2006 16888 At4g35490 (Mitochondrial ribosomal protein L11) (Ribosomal protein L11 homolog) (Ribosomal protein L11-like protein) ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:2117627; AT4G35490 ribosomal protein Os10g0466200 protein (Putative ribosomal protein L11) (Ribosomal protein L11 containing protein, expressed) (cDNA clone:001-120-G08, full insert sequence) Q9AV82 Q9AV82_ORYSJ OSJNBa0006L06.28 LOC_Os10g32870 Os10g0466200 OsJ_31828 OSNPB_100466200 ENOG411E38I F20D21.31 Q9SLI4 Q9SLI4_ARATH At1g54500/F20D21_31 (Rubredoxin, putative) (Rubredoxin-like superfamily protein) (Uncharacterized protein F20D21.31) 21875 At1g54500/F20D21_31 (Rubredoxin, putative) (Rubredoxin-like superfamily protein) (Uncharacterized protein F20D21.31) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; acyl-CoA dehydrogenase activity [GO:0003995]; flavin adenine dinucleotide binding [GO:0050660]; iron ion binding [GO:0005506]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539]; photosystem II assembly [GO:0010207] locus:2020083; AT1G54500 Rubredoxin Os08g0323400 protein (Putative rubredoxin) (cDNA clone:006-306-H08, full insert sequence) (cDNA clone:J013165B12, full insert sequence) Q6Z0E5 Q6Z0E5_ORYSJ Os08g0323400 Os08g0323400 OSJNBa0078D03.13 OSNPB_080323400 ENOG411E38J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromosome segregation protein Spc25 Os05g0110700 protein (Fragment) A0A0P0WH03 A0A0P0WH03_ORYSJ Os05g0110700 OSNPB_050110700 ENOG411E38K TRB2 Q9FJW5 TRB2_ARATH Telomere repeat-binding factor 2 (AtTRB2) (MYB transcription factor) (Telomere-binding protein 3) (AtTBP3) FUNCTION: Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. 33014 Telomere repeat-binding factor 2 (AtTRB2) (MYB transcription factor) (Telomere-binding protein 3) (AtTBP3) chromatin [GO:0000785]; nuclear chromosome, telomeric region [GO:0000784]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; nucleus [GO:0005634]; double-stranded telomeric DNA binding [GO:0003691]; protein homodimerization activity [GO:0042803]; single-stranded telomeric DNA binding [GO:0043047]; telomeric DNA binding [GO:0042162]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; nucleosome assembly [GO:0006334]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. locus:2158611; AT5G67580 DNA binding double-stranded telomeric DNA binding protein homodimerization single-stranded telomeric DNA binding transcription factor NA NA NA NA NA NA NA ENOG411E38U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0826800 protein,Os05g0474700 protein (cDNA clone:002-188-E04, full insert sequence),Os01g0826651 protein Q94D86,Q65WW2,A0A0P0V9X0 Q94D86_ORYSJ,Q65WW2_ORYSJ,A0A0P0V9X0_ORYSJ Os01g0826800 Os01g0826800 OsJ_03929 OSNPB_010826800 P0439E11.30,Os05g0474700 Os05g0474700 OSNPB_050474700 P0486C01.13,Os01g0826651 OSNPB_010826651 ENOG411E38V F4KG48,A0A1P8BCU8 F4KG48_ARATH,A0A1P8BCU8_ARATH SNARE-like superfamily protein 26011,26354 SNARE-like superfamily protein integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2145131; AT5G52270 Vesicle transport NA NA NA NA NA NA NA ENOG411E38Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein WI12 Os05g0342000 protein (Fragment) A0A0P0WL04 A0A0P0WL04_ORYSJ Os05g0342000 OSNPB_050342000 ENOG411E38X CITRX Q9M7X9 CITRX_ARATH Thioredoxin-like protein CITRX, chloroplastic (EC 1.8.-.-) (Cf-9-interacting thioredoxin) (AtCiTrx) (PEP-associated protein 10) (Thioredoxin Trx p) (Thioredoxin Z) DISRUPTION PHENOTYPE: Albino seedlings leading to lethality. Abnormal plastids lacking internal membrane structures. {ECO:0000269|PubMed:20133584, ECO:0000269|PubMed:20511297}. severe albino phenotype; inhibited in chloroplast development; reduced expression of class I chloroplast encoded genes.,Completely albino ceased growth and died shortly after germination. Plastids in trx p plants lacked visible internal membrane structures including stromal and granal thylakoids as well as starch granules Seedling lethal (inferred from pigment defect); Albino to pale yellow-F. Bornke-2010 FUNCTION: Thiol-disulfide oxidoreductase that plays a role in proper chloroplast development, most likely through regulating plastid-encoded polymerase (PEP) dependent chloroplast transcription. Acts as a component of the transcriptionally active plastid chromosome that is required for plastid gene expression. May be involved in cell death and defense responses (By similarity). {ECO:0000250|UniProtKB:Q9LKW0, ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20133584, ECO:0000269|PubMed:20511297, ECO:0000269|PubMed:21949211}. 1.8.-.- 20670 Thioredoxin-like protein CITRX, chloroplastic (EC 1.8.-.-) (Cf-9-interacting thioredoxin) (AtCiTrx) (PEP-associated protein 10) (Thioredoxin Trx p) (Thioredoxin Z) chloroplast [GO:0009507]; nucleoid [GO:0009295]; thylakoid [GO:0009579]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell death [GO:0008219]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; defense response [GO:0006952]; glycerol ether metabolic process [GO:0006662]; negative regulation of plant-type hypersensitive response [GO:0034051]; plastid organization [GO:0009657]; regulation of defense response [GO:0031347] locus:2083398; AT3G06730 thioredoxin-like protein CITRX Thioredoxin-like protein CITRX, chloroplastic (EC 1.8.-.-) (Cf-9-interacting thioredoxin) (OsCiTrx) (OsTrx25) Q8H2V6 CITRX_ORYSJ Os08g0378900 LOC_Os08g29110 OsJ_27130 OSJNBb0011E04.120 P0709D11.10 FUNCTION: Probable thiol-disulfide oxidoreductase that may play a role in proper chloroplast development. May be involved in cell death and defense responses. {ECO:0000250|UniProtKB:Q9LKW0, ECO:0000250|UniProtKB:Q9M7X9}. ENOG411E38Y MSRB6,MSRB5,MSRB2,MSRB3,MSRB4 Q8GWF4,Q9ZS91,Q9C5C8,Q9M0Z6,Q9M0Z5,A0A1P8B8L0 MSRB6_ARATH,MSRB5_ARATH,MSRB2_ARATH,MSRB3_ARATH,MSRB4_ARATH,A0A1P8B8L0_ARATH Peptide methionine sulfoxide reductase B6 (AtMSRB6) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B5 (AtMSRB5) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B2, chloroplastic (AtMSRB2) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B3 (AtMSRB3) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B4 (AtMSRB4) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Methionine sulfoxide reductase B4 DISRUPTION PHENOTYPE: Increased methionine sulfoxide content after cold treatment. Increased sensitivity to oxidative stress induced by cold. Loss of cold acclimation. {ECO:0000269|PubMed:17956860}. Sensitive to low temperature-P. Rey-2009 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Specifically reduces the MetSO R-enantiomer. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May play an essential function in association with MSRB1 in maintaining vegetative growth during environmental constraints, through the preservation of photosynthetic antennae. MSRB1 and MSRB2 account for most of the leaf peptide MSR capacity. {ECO:0000269|PubMed:15923321, ECO:0000269|PubMed:17761174, ECO:0000269|PubMed:19457862, ECO:0000269|PubMed:19874542}.,FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. Involved in cold tolerance. Eliminates MetSO and reactive oxygen species that accumulate at the ER during cold acclimation. MSRB family specifically reduces the MetSO R-enantiomer (By similarity). {ECO:0000250, ECO:0000269|PubMed:17956860}. MISCELLANEOUS: Reduced by thioredoxins f, m, x and y through a dithiol-disulfide exchange involving both redox-active Cys of the two partners. 1.8.4.12 17098,15251,21968,18847,15332,12919 Peptide methionine sulfoxide reductase B6 (AtMSRB6) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B5 (AtMSRB5) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B2, chloroplastic (AtMSRB2) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B3 (AtMSRB3) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B4 (AtMSRB4) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Methionine sulfoxide reductase B4 cytosol [GO:0005829]; metal ion binding [GO:0046872]; peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; protein repair [GO:0030091]; response to oxidative stress [GO:0006979],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; metal ion binding [GO:0046872]; peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; protein repair [GO:0030091]; response to oxidative stress [GO:0006979],endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; methionine-R-sulfoxide reductase activity [GO:0070191]; peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; cellular response to oxidative stress [GO:0034599]; cold acclimation [GO:0009631]; protein repair [GO:0030091],peptide-methionine (R)-S-oxide reductase activity [GO:0033743]; protein repair [GO:0030091]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in stems, young leaves, floral buds and flowers. Expressed at low levels in roots, mature leaves and siliques (at protein level). {ECO:0000269|PubMed:15923321}. locus:2138937;,locus:2138922;,locus:2141702;,locus:2138892;,locus:2138902; AT4G04840,AT4G04830,AT4G21860,AT4G04800,AT4G04810 methionine sulfoxide reductase Peptide methionine sulfoxide reductase B5 (OsMSRB5) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Peptide methionine sulfoxide reductase B3, chloroplastic (OsMSRB3) (EC 1.8.4.12) (Peptide-methionine (R)-S-oxide reductase),Os05g0404200 protein Q10L32,Q6AUK5,B9FPI9 MSRB5_ORYSJ,MSRB3_ORYSJ,B9FPI9_ORYSJ MSRB5 Os03g0360700 LOC_Os03g24600 OsJ_10923,MSRB3 Os05g0404200 LOC_Os05g33510 OSJNBb0006J12.16,Os05g0404200 OsJ_18495 OSNPB_050404200 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer (By similarity). {ECO:0000250}. ENOG411E38Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) Protein G1-like3,Protein G1-like4,Os02g0623400 protein Q0DZF3,Q7XRS1,A0A0P0VM14 G1L3_ORYSJ,G1L4_ORYSJ,A0A0P0VM14_ORYSJ G1L3 Os02g0623400 LOC_Os02g41460 B1215B07.4 OSJNOa148N02.6,G1L4 Os04g0516200 LOC_Os04g43580 OsJ_15463 OSJNBb0072M01.12,Os02g0623400 OSNPB_020623400 FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. ENOG411E384 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os01g0253200 protein Q9SNF2 Q9SNF2_ORYSJ Os01g0253200 OsJ_01127 OSNPB_010253200 P0503G09.12 ENOG411E385 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) OSJNBb0028M18.9 protein (OSJNBb0050N09.2 protein) (Os04g0162600 protein),Os04g0163150 protein,Os04g0164701 protein (Fragment),OSJNBb0050N09.12 protein (Os04g0164500 protein) Q7XSM8,A3AQW3,C7J1J9,Q7XQV7 Q7XSM8_ORYSJ,A3AQW3_ORYSJ,C7J1J9_ORYSJ,Q7XQV7_ORYSJ Os04g0162600 Os04g0162600 OSJNBb0028M18.9 OSJNBb0050N09.2 OSNPB_040162600,Os04g0163150 OsJ_13766 OSNPB_040163150,Os04g0164701 Os04g0164701 OSNPB_040164701,Os04g0164500 OsJ_13771 OSJNBb0050N09.12 OSNPB_040164500 ENOG411E386 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Os01g0127450 protein A0A0N7KC94 A0A0N7KC94_ORYSJ Os01g0127450 OSNPB_010127450 ENOG411E387 HY5 O24646,A0A1P8BB55 HY5_ARATH,A0A1P8BB55_ARATH Transcription factor HY5 (Protein LONG HYPOCOTYL 5) (bZIP transcription factor 56) (AtbZIP56),Basic-leucine zipper (BZIP) transcription factor family protein DISRUPTION PHENOTYPE: Reduced sensitivity to abscisic acid (ABA) leading to impaired ABA-mediated reduction of seed germination. The double mutant shw1 hy5 has altered root growth, hypocotyl length and hook angle similar to the single mutant shw1 in the darkness and far red light (FR), but shorter hypocotyl in WL, red light (RL) and blue light (BL). In addition, shw1 hy5 is recued for gravitropic root growth defect observed in hy5 single mutant. {ECO:0000269|PubMed:26474641}. In the hypocotyl of light-grown Arabidopsis seedlings chloroplasts are well developed. The morphology and distribution of chloroplasts of the mutant is indistinguishable from those of wild type only at the upper part of the hypocotyl. However a reduced number of chloroplasts which are pale green are observed at the middle part of the mutant. In the lower part of the hypocotyl the number of chloroplasts is reduced in wild-type plants; however the mutant showed only a few small and transparent plastids.,Mutants grown on agar plates have widely spread lateral roots. Compared with that of wild-type plants the direction of lateral root growth is nearly horizontal rather than downward indicating alteration of the gravitropic response. The angles between the lateral roots and the orientation of gravity are larger than those of the wild type. In addition secondary lateral roots grow and change their direction of elongation to the horizontal.,Roots of wild-type plants turn green when grown under light conditions. The roots of wildtype plants were green whereas those of the mutants remained white after having been cultured for 30 days under light. The chlorophyll content in roots of the wild-type plant (Ws) was 1.1 ;g of chlorophyll/gram of fresh roots. Chlorophyll was not detected in roots of hy5-1 or hy5-Ks50.,The longitudinal length of epidermal cells is ~1.9 times that of the wild type.,The mutant showed reduced secondary thickening of the hypocotyl with a hypocotyl diameter of ~50% of that in the wild type at the same stage. The number of lignified xylem vessels and fiber elements was reduced in the hypocotyl of the mutant as well.,Decreased sensitivity to ABA induced lateral root inhibition. Increased sensitivity to osmotic and salt stress. Increased ABA tolerance.,Under FRc conditions the length mutant hypocotyls is increased compared to that of wild-type plants. Under Rc conditions the hypocotyl length is also increased and the cotyledon area is smaller.,The average length of hypocotyls in the mutant seedlings is &,When grown under constant red light the mutant had longer hypocotyls compared with wild type.,At 4 DAG the number of lateral root primordia is increased in the Wassilewskija (Ws) wild type but the increase was two times greater in the hy5-Ks50 mutant than in Ws.,Mutant produces significantly reduced levels of anthocyanins and is not responsive to cytokinins at all.,Blue-light-grown double-mutant seedlings have a longer hypocotyl than seedlings carrying the hyh or hy5 mutation alone.,The double-mutant seedlings contains &,Under constant red-light conditions the hypocotyl length of the double mutant was intermediate to that of the parental single mutants. Long hypocotyl; Altered root waving and gravitropism-K. Okada-1997 FUNCTION: Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes (Probable). Acts coordinately with SPL7 to regulate the microRNA miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Regulates the abscisic acid (ABA) signaling pathway. Also involved in root gravitropism (PubMed:26474641). {ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26474641, ECO:0000305}. 18463,20213 Transcription factor HY5 (Protein LONG HYPOCOTYL 5) (bZIP transcription factor 56) (AtbZIP56),Basic-leucine zipper (BZIP) transcription factor family protein nucleus [GO:0005634]; protein-DNA complex [GO:0032993]; DNA binding [GO:0003677]; double-stranded DNA binding [GO:0003690]; regulatory region DNA binding [GO:0000975]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; gibberellic acid mediated signaling pathway [GO:0009740]; positive gravitropism [GO:0009958]; positive regulation of anthocyanin metabolic process [GO:0031539]; positive regulation of circadian rhythm [GO:0042753]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of photomorphogenesis [GO:0010099]; response to abscisic acid [GO:0009737]; response to far red light [GO:0010218]; response to karrikin [GO:0080167]; response to red light [GO:0010114]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Expressed in root, hypocotyl, cotyledon, leaf, stem and floral organs. locus:2148007; AT5G11260 transcription factor Os02g0203000 protein,Os06g0601500 protein (Fragment) A0A0P0VG62,A0A0N7KMD3 A0A0P0VG62_ORYSJ,A0A0N7KMD3_ORYSJ Os02g0203000 OSNPB_020203000,Os06g0601500 OSNPB_060601500 ENOG411E380 PER71 Q43387 PER71_ARATH Peroxidase 71 (Atperox P71) (EC 1.11.1.7) (ATP15a) (ATPO2) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G64120-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34890 Peroxidase 71 (Atperox P71) (EC 1.11.1.7) (ATP15a) (ATPO2) apoplast [GO:0048046]; cell wall [GO:0005618]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; defense response to fungus [GO:0050832]; hydrogen peroxide catabolic process [GO:0042744]; lignin metabolic process [GO:0009808]; plant-type cell wall organization [GO:0009664]; respiratory burst [GO:0045730]; response to oxidative stress [GO:0006979]; rhythmic process [GO:0048511] TISSUE SPECIFICITY: Slightly expressed in roots. locus:2164366; AT5G64120 Peroxidase NA NA NA NA NA NA NA ENOG411E381 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E383 NRPE5C Q9M1H8 RPE5C_ARATH DNA-directed RNA polymerase V subunit 5C FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase V involved in RNA-directed DNA methylation-dependent (RdDM) silencing of endogenous repeated sequences, including transposable elements. R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 26886 DNA-directed RNA polymerase V subunit 5C DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flower buds and siliques. {ECO:0000269|PubMed:19141635}. locus:2096971; AT3G54490 DNA-directed RNA polymerases I II and III subunit RPABC1-like NA NA NA NA NA NA NA ENOG411E389 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411DRBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0482500 protein (Fragment),Expressed protein (Os11g0160700 protein),Os11g0160700 protein (Fragment),Os11g0482500 protein C7J993,Q2RA87,A0A0P0XZ43,A0A0P0Y2I0 C7J993_ORYSJ,Q2RA87_ORYSJ,A0A0P0XZ43_ORYSJ,A0A0P0Y2I0_ORYSJ Os11g0482500 OSNPB_110482500,LOC_Os11g06190 Os11g0160700 OsJ_33066 OSNPB_110160700,Os11g0160700 OSNPB_110160700 ENOG411DVD2 P0C8Q4,A0A1P8B8J0 Y4990_ARATH,A0A1P8B8J0_ARATH Uncharacterized protein At4g19900,Alpha 1,4-glycosyltransferase family protein 73490,54038 Uncharacterized protein At4g19900,Alpha 1,4-glycosyltransferase family protein integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2119752; AT4G19900 Glycosyltransferase sugar-binding region containing DXD motif Os07g0567300 protein Q84SM4 Q84SM4_ORYSJ OJ1092_A07.115 Os07g0567300 OSNPB_070567300 ENOG411DVD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os08g0538800 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J023049D08, full insert sequence) Q69UA3 Q69UA3_ORYSJ P0666G10.106 Os08g0538800 OSNPB_080538800 ENOG411DVD0 Q682Z0,O64619,A0A1P8B2N3 Q682Z0_ARATH,O64619_ARATH,A0A1P8B2N3_ARATH Protein kinase superfamily protein (Uncharacterized protein At2g18890),At2g18890 (Protein kinase superfamily protein) (Uncharacterized protein At2g18890),Protein kinase superfamily protein 31476,44533,38738 Protein kinase superfamily protein (Uncharacterized protein At2g18890),At2g18890 (Protein kinase superfamily protein) (Uncharacterized protein At2g18890),Protein kinase superfamily protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2044420; AT2G18890 serine threonine-protein kinase Os04g0654600 protein Q0J9G2 Q0J9G2_ORYSJ Os04g0654600 Os04g0654600 OSNPB_040654600 ENOG411DVD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA queuine tRNA-ribosyltransferase subunit Queuine tRNA-ribosyltransferase accessory subunit 2 (Queuine tRNA-ribosyltransferase domain-containing protein 1) Q948C4 Q948C4_ORYSJ Os10g0141900 LOC_Os10g05220 Os10g0141900 OsJ_30695 OSJNAa0029P06.16 OSJNBa0034A02.7 OSNPB_100141900 FUNCTION: Non-catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, - His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). {ECO:0000256|HAMAP-Rule:MF_03043}. ENOG411DVD6 MCCB Q9LDD8 MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial (MCCase subunit beta) (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 2) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) mccb1-1 seeds have much higher levels of free branched-chain amino acids Ile Leu and Val. mccb1-1 seeds also have higher Arg His and Ser and lower Gln and Glu. FUNCTION: Carboxyltransferase subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism. {ECO:0000250}. MISCELLANEOUS: Temporal and spatial accumulation of the alpha and beta subunits during development at approximately equal molar ratios. PATHWAY: Amino-acid degradation; L-leucine degradation; (S)-3-hydroxy-3-methylglutaryl-CoA from 3-isovaleryl-CoA: step 2/3. ARA:AT4G34030-MONOMER; R-ATH-196780;R-ATH-70895; 6.4.1.4; 6.4.1.4 64013 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial (MCCase subunit beta) (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 2) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; methylcrotonoyl-CoA carboxylase activity [GO:0004485]; zinc ion binding [GO:0008270]; leucine catabolic process [GO:0006552] TISSUE SPECIFICITY: In roots, cotyledons, leaves, flowers, ovaries, siliques and embryos. locus:2124256; AT4G34030 methylcrotonoyl-CoA carboxylase beta chain Os08g0424200 protein (Fragment) Q0J5L9 Q0J5L9_ORYSJ Os08g0424200 Os08g0424200 OSNPB_080424200 ENOG411DVD7 RRP46 Q9LX74,Q9ZV81 EXOS5_ARATH,Q9ZV81_ARATH Exosome complex exonuclease RRP46 homolog (EC 3.1.13.-) (Exosome component 5) (Ribosomal RNA-processing protein 46),Exosome complex exonuclease RRP46-like protein (Uncharacterized protein At2g07110) FUNCTION: Probable component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. {ECO:0000250|UniProtKB:Q84T68}. R-ATH-429958;R-ATH-450604;R-ATH-6791226; 3.1.13.- 25810,17038 Exosome complex exonuclease RRP46 homolog (EC 3.1.13.-) (Exosome component 5) (Ribosomal RNA-processing protein 46),Exosome complex exonuclease RRP46-like protein (Uncharacterized protein At2g07110) cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; ribosome [GO:0005840]; deoxyribonuclease activity [GO:0004536]; double-stranded DNA binding [GO:0003690]; exonuclease activity [GO:0004527]; identical protein binding [GO:0042802]; ribonuclease activity [GO:0004540]; single-stranded RNA binding [GO:0003727]; nuclear mRNA surveillance [GO:0071028]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; rRNA 3'-end processing [GO:0031125]; rRNA catabolic process [GO:0016075]; U4 snRNA 3'-end processing [GO:0034475],cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; exonuclease activity [GO:0004527]; nuclear mRNA surveillance [GO:0071028]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; rRNA 3'-end processing [GO:0031125]; rRNA catabolic process [GO:0016075]; U4 snRNA 3'-end processing [GO:0034475] locus:2075351;,locus:2060111; AT3G46210,AT2G07110 exosome complex exonuclease Exosome complex exonuclease RRP46 homolog (EC 3.1.13.-) (Exosome component 5) (Ribosomal RNA-processing protein 46) (oRrp46) Q84T68 EXOS5_ORYSJ RRP46 Os03g0854200 LOC_Os03g63720 FUNCTION: Probable component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. May form a homodimer separately from exosome complexes and function in DNA cleavage process. Binds double-stranded DNA (dsDNA) and single-stranded RNA (ssRNA), and possesses hydrolytic DNase and phosphorolytic RNase activities in vitro. {ECO:0000269|PubMed:20660080}. ENOG411DVD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger MYM-type protein 1-like NA NA NA NA NA NA NA ENOG411DVD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase PKN PRK1 effector Myosin-like protein (Os08g0430100 protein) Q6ZKC2 Q6ZKC2_ORYSJ Os08g0430100 OJ1124_B05.3 OSNPB_080430100 ENOG411DVD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A28 (Alpha-expansin-28) (OsEXP28) (OsEXPA28) (OsaEXPa1.7),Os10g0439200 protein (Fragment) Q4PR40,A0A0P0XV64 EXP28_ORYSJ,A0A0P0XV64_ORYSJ EXPA28 EXP28 Os10g0439200 LOC_Os10g30340,Os10g0439200 OSNPB_100439200 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DVD9 Q9LZ73 Q9LZ73_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase-like protein 32497 3-oxoacyl-[acyl-carrier-protein] synthase-like protein locus:2184372; AT5G04520 Protein of unknown function (DUF455) Expressed protein (Os03g0363200 protein) Q10L10 Q10L10_ORYSJ Os03g0363200 LOC_Os03g24830 OSNPB_030363200 ENOG411DVDR AKT2,KT2 Q38898,A0A1P8B652 AKT2_ARATH,A0A1P8B652_ARATH Potassium channel AKT2/3,Potassium transport 2/3 DISRUPTION PHENOTYPE: Delayed development and flowering. {ECO:0000269|PubMed:21445098}. Reduced number of rosette leaves. Fewer inflorescence stalks. Reduced sucrose content in phloem. Decreased potassium permeability of the plasma membrane in leaf mesophyll cell layers-E. Spalding-2001 FUNCTION: Highly selective and weak inward-rectifying potassium channel. Plays a role in both loading and unloading potassium into/from the phloem sap. Seems to control sugar loading into phloem via a voltage-dependent process. Blocked by physiological concentrations of external calcium and by external acidification. May interact with the cytoskeleton or with regulatory proteins. Dephosphorylation by PP2CA not only leads to the inhibition of potassium currents but also to an increase of the voltage-dependence of the channel. Regulated by the CBL4/CIPK6 calcium sensor/protein kinase complex via a kinase interaction-dependent but phosphorylation-independent translocation of the channel to the plasma membrane. {ECO:0000269|PubMed:12447548, ECO:0000269|PubMed:12678562}. 91308,68830 Potassium channel AKT2/3,Potassium transport 2/3 endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; plasmodesma [GO:0009506]; identical protein binding [GO:0042802]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391]; response to abscisic acid [GO:0009737],integral component of membrane [GO:0016021]; voltage-gated potassium channel activity [GO:0005249] TISSUE SPECIFICITY: Expressed mainly in the phloem tissues throughout the plant but also, at a lower level, in leaf epiderm, mesophyll and guard cells. {ECO:0000269|PubMed:10377458, ECO:0000269|PubMed:10852932, ECO:0000269|PubMed:12034902, ECO:0000269|PubMed:8552711}. locus:2132065; AT4G22200 Potassium channel Potassium channel AKT2,Os05g0428700 protein (Fragment) Q75HP9,A0A0P0WMK7 AKT2_ORYSJ,A0A0P0WMK7_ORYSJ Os05g0428700 LOC_Os05g35410 OsJ_18626 OSJNBb0048I21.3 P0636F09.19,Os05g0428700 OSNPB_050428700 FUNCTION: Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization (By similarity). {ECO:0000250}. ENOG411DVDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os07g0685900 protein (cDNA clone:001-131-E09, full insert sequence),Os03g0430500 protein Q0D3H9,A0A0P0VYZ5 Q0D3H9_ORYSJ,A0A0P0VYZ5_ORYSJ Os07g0685900 Os07g0685900 OSNPB_070685900,Os03g0430500 OSNPB_030430500 ENOG411DVDP ESP1,ESP Q5IBC5,A0A1P8B3N4,F4K8J4 ESP1_ARATH,A0A1P8B3N4_ARATH,F4K8J4_ARATH Separase (EC 3.4.22.49) (Protein EXTRA SPINDLE POLES) (AtESP) (Protein RADIALLY SWOLLEN 4),Separase DISRUPTION PHENOTYPE: Embryo lethality. Embryos arrested at the globular stage, no cellularization of endosperm nuclei and enlargment of many nuclei and nucleoli resulting in a titan-like phenotype. {ECO:0000269|PubMed:16582011}. Approximately 25% of mutant seeds were dry and shrunken. Embryo lethal embryo development arrested at globular stage. Alteration of endosperm development occurred at the same stage - cellularization of endosperm is blocked with noticeable enlarged nuclei with enlarged nucleoli in both chalazal and peripheral regions. Seed defects similar to ttn mutants.,Embryo lethal similar to aesp-2. Embryo defective; Globular-C. Makaroff-2007 FUNCTION: Cleaves SYN1, releasing sister chromatid cohesion. Required for the release of cohesin at anaphase I and anaphase II, whereas the release of cohesin during diplotene and diakinesis occurs in a separase-independent process. Essential for embryo and endosperm development. May play a role in centromeric heterochromatin structure/formation during early meiosis, non-homologous centromere association and radial microtubule system (RMS) formation. May regulate the mitosis-specific cyclin CYCB1-1. {ECO:0000269|PubMed:16582011, ECO:0000269|PubMed:19592426, ECO:0000269|PubMed:20150278, ECO:0000269|PubMed:21559383}. R-ATH-2467813; 3.4.22.49; Oocyte meiosis (04114),Meiosis - yeast (04113),Cell cycle - yeast (04111),Cell cycle (04110) 3.4.22.49 244847,244975,32631 Separase (EC 3.4.22.49) (Protein EXTRA SPINDLE POLES) (AtESP) (Protein RADIALLY SWOLLEN 4),Separase cytoplasm [GO:0005737]; microtubule [GO:0005874]; mitotic spindle [GO:0072686]; nucleus [GO:0005634]; cysteine-type endopeptidase activity [GO:0004197]; peptidase activity [GO:0008233]; chromosome separation [GO:0051304]; cytokinesis by cell plate formation [GO:0000911]; embryo development ending in seed dormancy [GO:0009793]; endosperm development [GO:0009960]; exocytosis [GO:0006887]; meiotic chromosome separation [GO:0051307]; positive regulation of sister chromatid cohesion [GO:0045876]; regulation of establishment of cell polarity [GO:2000114]; response to glucose [GO:0009749]; unidimensional cell growth [GO:0009826]; vesicle-mediated transport [GO:0016192],nucleus [GO:0005634]; peptidase activity [GO:0008233] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and buds. {ECO:0000269|PubMed:16582011}. locus:2127238;,locus:2179073; AT4G22970,AT5G28550 Peptidase family C50 Os02g0770700 protein (Fragment) A0A0N7KG60 A0A0N7KG60_ORYSJ Os02g0770700 OSNPB_020770700 ENOG411DVDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Putative laccase-11 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 11) (Diphenol oxidase 11) (Urishiol oxidase 11),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) Q0DHL5,A0A0N7KKW9 LAC11_ORYSJ,A0A0N7KKW9_ORYSJ LAC11 Os05g0458300 LOC_Os05g38390 OsJ_018044,Os05g0458300 OSNPB_050458300 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ENOG411DVDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL11 (Protein YELLOW STRIPE LIKE 11) (OsYSL11) Q7X660 YSL11_ORYSJ YSL11 Os04g0524900 LOC_Os04g44330 OsJ_014870 OSJNBa0038O10.1 OSJNBb0065J09.18 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DVDT PCMP-H38 Q9FI80 PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 pale green leaf Dwarf; Pale green leaves-L. Zhang-2009 73259 Pentatricopeptide repeat-containing protein At5g48910 chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2154389; AT5G48910 Pentatricopeptide repeat-containing protein Expressed protein (Os03g0821700 protein) (cDNA clone:J033116F23, full insert sequence) Q84TA9 Q84TA9_ORYSJ OJ1754_E06.32 LOC_Os03g60690 Os03g0821700 OsJ_13153 OSNPB_030821700 ENOG411DVDU YAB1,AFO O22152,A0A1P8AX82 YAB1_ARATH,A0A1P8AX82_ARATH Axial regulator YABBY 1 (Fl-54) (Protein ABNORMAL FLORAL ORGANS) (Protein FILAMENTOUS FLOWER) (Protein antherless),Plant-specific transcription factor YABBY family protein DISRUPTION PHENOTYPE: Leaves polarity and growth defects. {ECO:0000269|PubMed:19837869}. Clusters of filamentous structures and flowers; Altered floral organ number and shape-K. Okada-1999 FUNCTION: Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. 25779,18883 Axial regulator YABBY 1 (Fl-54) (Protein ABNORMAL FLORAL ORGANS) (Protein FILAMENTOUS FLOWER) (Protein antherless),Plant-specific transcription factor YABBY family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abaxial cell fate specification [GO:0010158]; cell fate commitment [GO:0045165]; fruit development [GO:0010154]; inflorescence meristem growth [GO:0010450]; meristem structural organization [GO:0009933]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of flower development [GO:0009909]; regulation of leaf development [GO:2000024]; regulation of shoot apical meristem development [GO:1902183]; specification of floral organ identity [GO:0010093]; specification of plant organ position [GO:0090706],multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo the expression starts during the transition between globular and heart stages in the cotyledon anlagen. From the heart stage, expression expands to abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. TISSUE SPECIFICITY: Expressed in abaxial regions of young lateral aerial organs, and in primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:14555697, ECO:0000269|Ref.3}. locus:2005492; AT2G45190 axial regulator YABBY Protein YABBY 4 (OsYAB7) (OsYABBY4) Q6H668 YAB4_ORYSJ YAB4 Os02g0643200 LOC_Os02g42950 OJ1282_H11.2 OsJ_007454 FUNCTION: Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. ENOG411DVDZ O80941 O80941_ARATH Glycosyltransferase (Glycosyltransferase (DUF604)) (Putative zinc finger protein) 60372 Glycosyltransferase (Glycosyltransferase (DUF604)) (Putative zinc finger protein) integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2040711; AT2G37730 Protein of unknown function DUF604 Fringe protein, putative, expressed (Os03g0269900 protein),Os02g0517150 protein Q10NG1,A0A0P0VJN9 Q10NG1_ORYSJ,A0A0P0VJN9_ORYSJ Os03g0269900 LOC_Os03g16334 Os03g0269900 OsJ_10286 OSNPB_030269900,Os02g0517150 OSNPB_020517150 ENOG411DVDX UBP14 Q8L6Y1 UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.4.19.12) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) per1 plants show normal root hair development under control conditions but displayed an inhibited root hair elongation phenotype upon Pi deficiency. The per1 mutant exhibits a pleiotropic phenotype under control conditions resembling Pi-deficient plants in several aspects. Embryo defective; Globular; Enlarged endosperm nuclei-D. Meinke; R. Vierstra-2002 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development. {ECO:0000269|PubMed:11576424, ECO:0000269|PubMed:11788751}. ARA:AT3G20630-MONOMER; R-ATH-5689880;R-ATH-8866652; 3.4.19.12 88374 Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.4.19.12) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) cytosol [GO:0005829]; nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; zinc ion binding [GO:0008270]; embryo development ending in seed dormancy [GO:0009793]; protein deubiquitination [GO:0016579]; root hair elongation [GO:0048767]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Constitutively and ubiquitously expressed (at protein level). {ECO:0000269|PubMed:11576424}. locus:2083440; AT3G20630 ubiquitin carboxyl-terminal hydrolase Ubiquitinyl hydrolase 1 (EC 3.4.19.12) Q5VRV7 Q5VRV7_ORYSJ Os01g0177200 OsJ_00593 OSNPB_010177200 P0013F10.24 ENOG411DVDY NCA1 Q9M2V1 NCA1_ARATH Protein NCA1 (NO CATALASE ACTIVITY 1) DISRUPTION PHENOTYPE: Hyponastic leaves and reduced growth (PubMed:24285797). Severely reduced catalase activities (PubMed:24285797). Hypersensitivity to multiple abiotic stresses (PubMed:25700484). {ECO:0000269|PubMed:24285797, ECO:0000269|PubMed:25700484}. FUNCTION: Has holdase chaperone activity that may fold catalase to a functional structure (PubMed:25700484). Not required for the peroxisome import of catalases (PubMed:25700484). Required for the activity of catalases and acts mainly at the post-transcriptional level (PubMed:24285797). {ECO:0000269|PubMed:24285797, ECO:0000269|PubMed:25700484}. 44530 Protein NCA1 (NO CATALASE ACTIVITY 1) cytosol [GO:0005829]; nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; maintenance of DNA methylation [GO:0010216]; positive regulation of catalase activity [GO:1902553]; protein ubiquitination [GO:0016567]; regulation of methylation-dependent chromatin silencing [GO:0090308] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:25700484}. locus:2096179; AT3G54360 RING Os02g0795300 protein (Fragment),Os01g0104100 protein (Fragment) A0A0P0VQW4,A0A0P0UX72,A0A0N7KC65 A0A0P0VQW4_ORYSJ,A0A0P0UX72_ORYSJ,A0A0N7KC65_ORYSJ Os02g0795300 OSNPB_020795300,Os01g0104100 OSNPB_010104100 ENOG411DVDB Q8VYF0 Q8VYF0_ARATH Expressed protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At2g27590) 42886 Expressed protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At2g27590) methyltransferase activity [GO:0008168] locus:2038668; AT2G27590 NA Os01g0858700 protein (cDNA clone:J023056F20, full insert sequence) Q5N900 Q5N900_ORYSJ Os01g0858700 Os01g0858700 OsJ_04137 OSNPB_010858700 P0683F02.27 ENOG411DVDC NAC014 B5X570,F4HPG6 NAC14_ARATH,F4HPG6_ARATH NAC domain-containing protein 14 (ANAC014) (Protein NTM1-like 2),NAC 014 FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. 74048,73556 NAC domain-containing protein 14 (ANAC014) (Protein NTM1-like 2),NAC 014 integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. locus:2037920; AT1G33060 No apical meristem (NAM) protein NAC2 protein (NAC2 protein-like) (Os08g0157900 protein) Q7EZD3 Q7EZD3_ORYSJ P0498E12.103 Os08g0157900 OsJ_26109 OSNPB_080157900 ENOG411DVDA Q8H1S5 Q8H1S5_ARATH GATA zinc finger protein (Uncharacterized protein At3g52610) 52382 GATA zinc finger protein (Uncharacterized protein At3g52610) locus:2083183; AT3G52610 NA Os01g0861900 protein Q94CW7 Q94CW7_ORYSJ Os01g0861900 OSNPB_010861900 P0423B08.6 P0679C12.47 ENOG411DVDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase/Carboxylesterase Os04g0174900 protein (cDNA, clone: J065014E07, full insert sequence),Lysophospholipase 2-like (Os01g0612500 protein) (cDNA clone:J023004J23, full insert sequence),Os05g0588100 protein (Fragment) B7F8C9,Q5ZBI5,A0A0P0WR56 B7F8C9_ORYSJ,Q5ZBI5_ORYSJ,A0A0P0WR56_ORYSJ Os04g0174900 OsJ_14006 OSNPB_040174900,Os01g0612500 OSNPB_010612500 P0046B10.25 P0410E01.6,Os05g0588100 OSNPB_050588100 ENOG411DVDG GUX1,GUX3,PGSIP1 Q9LSB1,Q8W4A7,F4J8T8 GUX1_ARATH,GUX3_ARATH,F4J8T8_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 (UDP-GlcA:xylan glucuronyltransferase 1) (EC 2.4.1.-) (Glycogenin-like protein 1) (Plant glycogenin-like starch initiation protein 1) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 1) (AtGUX1),Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 (UDP-GlcA:xylan glucuronyltransferase 3) (EC 2.4.1.-) (Glycogenin-like protein 3) (Plant glycogenin-like starch initiation protein 2) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 3) (AtGUX3),Hexosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show reduced xylan substitution. {ECO:0000269|PubMed:20852069}. GlcA transferase activity in pgsip1 was only 50% of the wild type level. Significantly lower contents of GlcA compared to wild type. Abnormal xylan modification-P. Dupree-2010 FUNCTION: Glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls. In association with GUX2, is responsible for almost all of the substitutions of the xylan backbone in stem glucuronoxylan. {ECO:0000269|PubMed:20852069, ECO:0000269|PubMed:21124849}.,FUNCTION: May be involved in the substitutions of the xylan backbone in stem glucuronoxylan. {ECO:0000250}. ARA:AT3G18660-MONOMER; R-ATH-5357572;R-ATH-6798695;R-ATH-70221; 2.4.1.- 76285,71487,75487 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 (UDP-GlcA:xylan glucuronyltransferase 1) (EC 2.4.1.-) (Glycogenin-like protein 1) (Plant glycogenin-like starch initiation protein 1) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 1) (AtGUX1),Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 (UDP-GlcA:xylan glucuronyltransferase 3) (EC 2.4.1.-) (Glycogenin-like protein 3) (Plant glycogenin-like starch initiation protein 2) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 3) (AtGUX3),Hexosyltransferase (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucuronosyltransferase activity [GO:0015020]; glucuronoxylan glucuronosyltransferase activity [GO:0080116]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan biosynthetic process [GO:0045492],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; glucuronosyltransferase activity [GO:0015020]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan biosynthetic process [GO:0045492],Golgi apparatus [GO:0005794]; glucuronosyltransferase activity [GO:0015020]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan biosynthetic process [GO:0045492] locus:2094014;,locus:2196020; AT3G18660,AT1G77130 plant glycogenin-like starch initiation protein Hexosyltransferase (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) (Fragment),Os01g0880200 protein (Fragment),Os05g0426400 protein (Fragment) Q5NA53,A0A0P0WMK1,A0A0P0VBA1,A0A0P0VB67,A0A0P0VB85,A0A0P0WMH2 Q5NA53_ORYSJ,A0A0P0WMK1_ORYSJ,A0A0P0VBA1_ORYSJ,A0A0P0VB67_ORYSJ,A0A0P0VB85_ORYSJ,A0A0P0WMH2_ORYSJ P0018C10.44-1 Os01g0880200 OSNPB_010880200,Os05g0426400 OSNPB_050426400,Os01g0880200 OSNPB_010880200 ENOG411DVDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PA domain Os03g0335300 protein (Vacuolar sorting receptor 1, putative, expressed) (cDNA clone:J013000C17, full insert sequence) (cDNA clone:J023133A05, full insert sequence),Os03g0335300 protein (Fragment) Q10LT8,A0A0P0VX62 Q10LT8_ORYSJ,A0A0P0VX62_ORYSJ LOC_Os03g21720 Os03g0335300 OsJ_10747 OSNPB_030335300,Os03g0335300 OSNPB_030335300 ENOG411DVDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquinol oxidase Ubiquinol oxidase 1b, mitochondrial (EC 1.10.3.11) (Alternative oxidase 1b) (OsAOX1B) O82766 AOX1B_ORYSJ AOX1B Os04g0600300 LOC_Os04g51160 OsJ_16033 OSJNBa0083N12.12 FUNCTION: Catalyzes the cyanide-resistant oxidation of ubiquinol and the reduction of molecular oxygen to water, but does not translocate protons and consequently is not linked to oxidative phosphorylation. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures. {ECO:0000250|UniProtKB:Q39219}. ENOG411DVDJ PDR2 Q9LT02 PDR2_ARATH Probable manganese-transporting ATPase PDR2 (EC 3.6.3.-) (Protein MALE GAMETOGENESIS IMPAIRED ANTHERS) (Protein PHOSPHATE DEFICIENCY RESPONSE 2) DISRUPTION PHENOTYPE: Imbalances in cation homeostasis and severe reduction in fertility. Increased inhibition of primary root growth in low inorganic phosphate conditions. {ECO:0000269|PubMed:14996215, ECO:0000269|PubMed:16291648, ECO:0000269|PubMed:19666499}. similar to mia-1 and mia-2,Mutant plants exhibit a severe reduction in fertility and markedly reduced size of the siliques. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure. Consequently pollen grain was mostly not released from open anthers and those that were released appeared as pollen tetrads. Pollen germination in vitro was very poor compared to the wild type pollen. In addition mutant plants suffer from imbalances in cation homeostasis. Small rosette leaves; Severely reduced fertility and silique size; Low pollen germination rate; Late flowering; Delayed senescence-M. Palmgren-2005 FUNCTION: Mediates manganese transport into the endoplasmic reticulum. The ATPase activity is required for cellular manganese homeostasis (By similarity). Plays an important role in pollen and root development through its impact on protein secretion and transport processes. Functions together with LPR1 and LPR2 in a common pathway that adjusts root meristem activity to phosphate availability. Under phosphate limitation, restricts SHR movement in root meristem and is required for maintaining SCR expression in the root meristem stem-cell niche as well as for proximal meristem activity. Can complement the yeast spf1 mutant. {ECO:0000250, ECO:0000269|PubMed:14996215, ECO:0000269|PubMed:16291648, ECO:0000269|PubMed:19666499}. R-ATH-936837; 3.6.3.- 131115 Probable manganese-transporting ATPase PDR2 (EC 3.6.3.-) (Protein MALE GAMETOGENESIS IMPAIRED ANTHERS) (Protein PHOSPHATE DEFICIENCY RESPONSE 2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; metal ion binding [GO:0046872]; cellular calcium ion homeostasis [GO:0006874]; cellular metal ion homeostasis [GO:0006875]; cellular response to phosphate starvation [GO:0016036]; meristem maintenance [GO:0010073]; pollen germination [GO:0009846]; pollen maturation [GO:0010152]; stem cell fate determination [GO:0048867] TISSUE SPECIFICITY: Highly expressed in root meristem. Expressed in pavement cells of trichomes, stipules, stamens and pollen grains. {ECO:0000269|PubMed:19666499}. locus:2171686; AT5G23630 Cation-transporting Cation-transporting ATPase (EC 3.6.3.-) (Fragment) A0A0P0WM50 A0A0P0WM50_ORYSJ Os05g0402800 OSNPB_050402800 ENOG411DVDK SYT1,SYT2,SYTA Q9SKR2,B6ETT4,Q9SKQ7,F4IFM7,F4IFM9,F4IFM6 SYT1_ARATH,SYT2_ARATH,Q9SKQ7_ARATH,F4IFM7_ARATH,F4IFM9_ARATH,F4IFM6_ARATH Synaptotagmin-1 (NTMC2T1.1) (Synaptotagmin A),Synaptotagmin-2 (NTMC2T1.2) (Synaptotagmin B),Calcium-dependent lipid-binding (CaLB domain) family protein (Predicted protein),Synaptotagmin A,Calcium-dependent lipid-binding (CaLB domain) family protein DISRUPTION PHENOTYPE: Reduced growth. {ECO:0000269|PubMed:19088328, ECO:0000269|PubMed:19088329}. Knockdown: Resistant to viral infection-S. Lazarowitz-2010 FUNCTION: Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. {ECO:0000269|PubMed:19088328, ECO:0000269|PubMed:19088329, ECO:0000269|PubMed:19088330, ECO:0000269|PubMed:20133785, ECO:0000269|PubMed:20498364}.,FUNCTION: May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. {ECO:0000269|PubMed:22140429}. MISCELLANEOUS: Phospholipid binding to the first C2 domain is calcium-dependent, but binding to the second C2 domain is calcium-independent. {ECO:0000305|PubMed:19088329}. 61744,60837,29233,64490,29544,66260 Synaptotagmin-1 (NTMC2T1.1) (Synaptotagmin A),Synaptotagmin-2 (NTMC2T1.2) (Synaptotagmin B),Calcium-dependent lipid-binding (CaLB domain) family protein (Predicted protein),Synaptotagmin A,Calcium-dependent lipid-binding (CaLB domain) family protein endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; metal ion binding [GO:0046872]; endocytosis [GO:0006897]; viral process [GO:0016032],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; metal ion binding [GO:0046872]; protein secretion [GO:0009306],integral component of membrane [GO:0016021]; lipid binding [GO:0008289],cortical endoplasmic reticulum [GO:0032541]; cytoplasmic side of plasma membrane [GO:0009898]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; phosphatidylinositol phosphate binding [GO:1901981]; endocytic recycling [GO:0032456]; endocytosis [GO:0006897]; plasma membrane repair [GO:0001778]; protein targeting to membrane [GO:0006612]; response to cold [GO:0009409]; response to mechanical stimulus [GO:0009612]; transport of virus in host, cell to cell [GO:0046740] TISSUE SPECIFICITY: Expressed in roots, shoots, rosette and cauline leaves, inflorescences, and siliques. In roots, expressed in vascular bundle, epidermis, the differential zone of the tips of root hairs, and the quiescent center and columella of root tips. {ECO:0000269|PubMed:19088329, ECO:0000269|PubMed:20498364}. locus:2198581;,locus:2047132;,locus:2047027;,locus:2047057; AT2G20990,AT1G20080,AT2G21040,AT2G21010 Plant synaptotagmin Os02g0448400 protein (Putative CLB1 protein),Os09g0538800 protein (Putative CLB1 protein) (cDNA clone:J013038J10, full insert sequence),Os09g0538800 protein (Fragment),Os01g0819200 protein,Os01g0819150 protein,Os01g0819300 protein (Fragment) Q6ETC4,Q69JE2,A0A0P0XPW9,A0A0P0V9S4,A0A0P0V9V3,A0A0P0V9L7 Q6ETC4_ORYSJ,Q69JE2_ORYSJ,A0A0P0XPW9_ORYSJ,A0A0P0V9S4_ORYSJ,A0A0P0V9V3_ORYSJ,A0A0P0V9L7_ORYSJ Os02g0448400 OJ1538_H05.7 OSNPB_020448400,Os09g0538800 B1274F11.3 OsJ_30162 OSNPB_090538800 P0229B10.34,Os09g0538800 OSNPB_090538800,Os01g0819200 OSNPB_010819200,Os01g0819150 OSNPB_010819150,Os01g0819300 OSNPB_010819300 ENOG411DVDH AAE12,AEE22,AAE11,AAE20 Q9SS00,Q9C9G2,Q9C8D4,Q9SS01 AAE12_ARATH,AEE22_ARATH,AAE11_ARATH,AAE20_ARATH Probable acyl-activating enzyme 12, peroxisomal (EC 6.2.1.-),Probable acyl-activating enzyme 22 (EC 6.2.1.-),Butyrate--CoA ligase AAE11, peroxisomal (EC 6.2.1.2) (Acyl-activating enzyme 11) (Butyryl-CoA synthetase),Benzoate--CoA ligase, peroxisomal (EC 6.2.1.25) (Acyl-activating enzyme 20) (Protein BENZOYLOXYGLUCOSINOLATE 1) FUNCTION: May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. {ECO:0000250}.,FUNCTION: Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate. {ECO:0000269|PubMed:12805634}.,FUNCTION: Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants. {ECO:0000269|PubMed:17651367}. ARA:AT1G65890-MONOMER;,ARA:AT1G68270-MONOMER;,ARA:AT1G66120-MONOMER;,ARA:AT1G65880-MONOMER;MetaCyc:AT1G65880-MONOMER; 6.2.1.-,6.2.1.2,6.2.1.25 64725,60209,63941,64941 Probable acyl-activating enzyme 12, peroxisomal (EC 6.2.1.-),Probable acyl-activating enzyme 22 (EC 6.2.1.-),Butyrate--CoA ligase AAE11, peroxisomal (EC 6.2.1.2) (Acyl-activating enzyme 11) (Butyryl-CoA synthetase),Benzoate--CoA ligase, peroxisomal (EC 6.2.1.25) (Acyl-activating enzyme 20) (Protein BENZOYLOXYGLUCOSINOLATE 1) peroxisome [GO:0005777]; ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631],ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631],peroxisome [GO:0005777]; butyrate-CoA ligase activity [GO:0047760]; butyrate metabolic process [GO:0019605],peroxisome [GO:0005777]; benzoate-CoA ligase activity [GO:0018858]; defense response [GO:0006952]; glucosinolate biosynthetic process [GO:0019761] TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:12805634}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12805634}. locus:2009714;,locus:2199267;,locus:2013860;,locus:2009774; AT1G65890,AT1G68270,AT1G66120,AT1G65880 acid-thiol ligase activity Acyl-activating enzyme 11, putative, expressed (Os03g0130100 protein) (cDNA clone:002-171-C04, full insert sequence),Os09g0555800 protein Q9SNJ6,Q0IZQ6 Q9SNJ6_ORYSJ,Q0IZQ6_ORYSJ Os03g0130100 LOC_Os03g03790 Os03g0130100 OsJ_09281 OSNPB_030130100,Os09g0555800 Os09g0555800 OsJ_30291 OSNPB_090555800 ENOG411DVDI Q8VYJ0,Q9LYG5,Q94AM5,A0A1R7T386 Q8VYJ0_ARATH,Q9LYG5_ARATH,Q94AM5_ARATH,A0A1R7T386_ARATH Alpha/beta-Hydrolases superfamily protein (At1g18360/F15H18_2),Alpha/beta-Hydrolases superfamily protein (At5g11650) (Lysophospholipase-like protein),Alpha/beta-Hydrolases superfamily protein (Putative lysophospholipase homolog),Alpha/beta-Hydrolases superfamily protein ARA:AT1G18360-MONOMER;,ARA:AT5G11650-MONOMER;,ARA:AT1G73480-MONOMER; R-ATH-1482883;R-ATH-426048; 41960,43273,50767,32888 Alpha/beta-Hydrolases superfamily protein (At1g18360/F15H18_2),Alpha/beta-Hydrolases superfamily protein (At5g11650) (Lysophospholipase-like protein),Alpha/beta-Hydrolases superfamily protein (Putative lysophospholipase homolog),Alpha/beta-Hydrolases superfamily protein membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; lipase activity [GO:0016298]; lipid metabolic process [GO:0006629],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2014084;,locus:2181950;,locus:2206825; AT1G18360,AT5G11650,AT1G73480 hydrolase alpha beta fold family protein Os09g0394700 protein (cDNA, clone: J100045P03, full insert sequence),Hydrolase, alpha/beta fold family protein, expressed (Os03g0719400 protein) (Putative lipase) (cDNA clone:J023019A20, full insert sequence),Monoglyceride lipase isoform 2-like (Os01g0199400 protein) (cDNA clone:J013154B19, full insert sequence),Os01g0199400 protein A3BYJ4,Q6ASW1,Q4VWY7,A0A0P0UZG8 A3BYJ4_ORYSJ,Q6ASW1_ORYSJ,Q4VWY7_ORYSJ,A0A0P0UZG8_ORYSJ Os09g0394700 OsJ_29253 OSNPB_090394700,B1377B10.6 Os03g0719400 LOC_Os03g51010 OSNPB_030719400,B1046G12.33-1 Os01g0199400 OsJ_00752 OSNPB_010199400,Os01g0199400 OSNPB_010199400 ENOG411DVDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411DVDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA QLQ Growth-regulating factor 8 (OsGRF8) (Transcription activator GRF8),Os11g0551900 protein Q6AWY1,A0A0P0Y3G2 GRF8_ORYSJ,A0A0P0Y3G2_ORYSJ GRF8 Os11g0551900 LOC_Os11g35030,Os11g0551900 OSNPB_110551900 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411DYV2 F4JV40 F4JV40_ARATH Transmembrane protein 30195 Transmembrane protein integral component of membrane [GO:0016021] locus:2125647; AT4G32680 NA Os02g0659600 protein A0A0P0VMJ2 A0A0P0VMJ2_ORYSJ Os02g0659600 OSNPB_020659600 ENOG411EKVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os01g0383700 protein C7IWT8 C7IWT8_ORYSJ Os01g0383700 Os01g0383700 OSNPB_010383700 ENOG411EFNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EFNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EFNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411EFNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NOL1/NOP2/sun family NA NA NA NA NA NA NA ENOG411EFNJ F4JQQ8,Q8VZS7 F4JQQ8_ARATH,Q8VZS7_ARATH Suppressor,AT4G18070 protein (At4g18070) (Suppressor) (Uncharacterized protein At4g18070) 24004,27778 Suppressor,AT4G18070 protein (At4g18070) (Suppressor) (Uncharacterized protein At4g18070) locus:2117676; AT4G18070 NA NA NA NA NA NA NA NA ENOG411EFNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EFNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411EFNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) NA NA NA NA NA NA NA ENOG411EFNP Q9M9U8,Q9LTU8,Q9FN35,Q9M9U7,F4ILN3,Q3ED97 Q9M9U8_ARATH,Q9LTU8_ARATH,Q9FN35_ARATH,Q9M9U7_ARATH,F4ILN3_ARATH,Q3ED97_ARATH F6A14.12 protein (RING domain protein) (RING/U-box superfamily protein),RING/U-box superfamily protein,Gb|AAF27103.1 (RING domain protein) (RING/U-box superfamily protein),At1g18760 (F6A14.13 protein) (Zinc finger, C3HC4 type (RING finger) family protein) 36920,36432,26799,26041,33389,12119 F6A14.12 protein (RING domain protein) (RING/U-box superfamily protein),RING/U-box superfamily protein,Gb|AAF27103.1 (RING domain protein) (RING/U-box superfamily protein),At1g18760 (F6A14.13 protein) (Zinc finger, C3HC4 type (RING finger) family protein) integral component of membrane [GO:0016021],ubiquitin-protein transferase activity [GO:0004842] locus:2034924;,locus:505006341;,locus:2154729;,locus:2034939;,locus:2060699;,locus:2034934; AT1G18780,AT3G13228,AT5G53910,AT1G18760,AT2G29840,AT1G18770 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EFNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) NA NA NA NA NA NA NA ENOG411EFN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HCaRG protein NA NA NA NA NA NA NA ENOG411E1E8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family OSJNBa0013K16.23 protein (Os04g0587400 protein) (cDNA clone:J023108B05, full insert sequence),Os01g0217100 protein (cDNA clone:J013008N09, full insert sequence),Os09g0334401 protein Q7X7S4,Q5QNF4,A0A0P0XL60 Q7X7S4_ORYSJ,Q5QNF4_ORYSJ,A0A0P0XL60_ORYSJ Os04g0587400 OSJNBa0013K16.23 OSNPB_040587400,Os01g0217100 OSNPB_010217100 P0515G01.45 P0665D10.4,Os09g0334401 OSNPB_090334401 ENOG411DZ79 RPN2A,RPN2B O48844,Q9MAT0 PSD1A_ARATH,PSD1B_ARATH 26S proteasome non-ATPase regulatory subunit 1 homolog A (26S proteasome regulatory subunit RPN2a) (AtRPN2a) (26S proteasome regulatory subunit S1 homolog A),26S proteasome non-ATPase regulatory subunit 1 homolog B (26S proteasome regulatory subunit RPN2b) (AtRPN2b) (26S proteasome regulatory subunit S1 homolog B) FUNCTION: Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 108977,108866 26S proteasome non-ATPase regulatory subunit 1 homolog A (26S proteasome regulatory subunit RPN2a) (AtRPN2a) (26S proteasome regulatory subunit S1 homolog A),26S proteasome non-ATPase regulatory subunit 1 homolog B (26S proteasome regulatory subunit RPN2b) (AtRPN2b) (26S proteasome regulatory subunit S1 homolog B) cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; proteasome storage granule [GO:0034515]; enzyme regulator activity [GO:0030234]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of protein catabolic process [GO:0042176],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; proteasome storage granule [GO:0034515]; enzyme regulator activity [GO:0030234]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163]; regulation of protein catabolic process [GO:0042176] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2046402;,locus:2010672; AT2G32730,AT1G04810 26S proteasome 26S proteasome non-ATPase regulatory subunit 1 homolog,Os04g0608500 protein (Fragment),Os08g0224700 protein (Fragment),Os12g0590066 protein (Fragment) Q6Z921,A0A0P0WEK5,A0A0P0XD82,A0A0P0YBV3 Q6Z921_ORYSJ,A0A0P0WEK5_ORYSJ,A0A0P0XD82_ORYSJ,A0A0P0YBV3_ORYSJ Os08g0224700 Os08g0224700 OSNPB_080224700 P0494D11.3,Os04g0608500 OSNPB_040608500,Os08g0224700 OSNPB_080224700,Os12g0590066 OSNPB_120590066 FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000256|PIRNR:PIRNR015947}. ENOG411DZ78 ADH1 P06525 ADH1_ARATH Alcohol dehydrogenase class-P (AtADH) (EC 1.1.1.1) DISRUPTION PHENOTYPE: Loss of alcohol dehydrogenase activity (PubMed:3377754, PubMed:12509334). Increased resistance to allyl alcohol (PubMed:20508152). Decreased survival, associated with impaired lateral roots development, upon oxygen deprivation leading to hypoxic conditions (PubMed:12509334, PubMed:12857811). Impaired root acclimation to hypoxic stress (PubMed:9880346). {ECO:0000269|PubMed:12509334, ECO:0000269|PubMed:12857811, ECO:0000269|PubMed:20508152, ECO:0000269|PubMed:3377754, ECO:0000269|PubMed:9880346}. FUNCTION: Alcohol dehydrogenase mostly active on ethanol (EtOH), but exhibits broad substrates selectivity for primary and secondary alcohols (e.g. butanol, propyl alcohol, pentanol, isopentanol, ethylene glycol, isopropanol, methanol and tertiary butyl alcohol) (PubMed:23707506). Converts allyl alcohol to highly toxic acryl-aldehyde (PubMed:20508152). Required for survival and acclimation in hypoxic conditions, especially in roots (PubMed:12857811, PubMed:9880346). {ECO:0000269|PubMed:12857811, ECO:0000269|PubMed:20508152, ECO:0000269|PubMed:23707506, ECO:0000269|PubMed:9880346}. MISCELLANEOUS: Unlike most plants, Arabidopsis contains only one gene for ADH. {ECO:0000303|PubMed:3377754}. 1.1.1.1 41178 Alcohol dehydrogenase class-P (AtADH) (EC 1.1.1.1) cytosol [GO:0005829]; plasma membrane [GO:0005886]; alcohol dehydrogenase (NAD) activity [GO:0004022]; nucleotide binding [GO:0000166]; protein homodimerization activity [GO:0042803]; zinc ion binding [GO:0008270]; positive regulation of cellular response to hypoxia [GO:1900039]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to caffeine [GO:0031000]; response to cold [GO:0009409]; response to estradiol [GO:0032355]; response to flooding [GO:0009413]; response to hydrogen peroxide [GO:0042542]; response to hypoxia [GO:0001666]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to sucrose [GO:0009744]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Root specific (PubMed:9611167). Also detected in etiolated seedlings and leaves in cold conditons (PubMed:12231733). {ECO:0000269|PubMed:12231733, ECO:0000269|PubMed:9611167}. locus:2025237; AT1G77120 alcohol dehydrogenase Alcohol dehydrogenase 2 (EC 1.1.1.1),Alcohol dehydrogenase 1 (EC 1.1.1.1),Os11g0210600 protein (Fragment),Os11g0210300 protein,Os11g0210500 protein (Fragment) Q0ITW7,Q2R8Z5,Q0ITW6,A0A0P0Y0G4,A0A0P0Y0E7 ADH2_ORYSJ,ADH1_ORYSJ,Q0ITW6_ORYSJ,A0A0P0Y0G4_ORYSJ,A0A0P0Y0E7_ORYSJ ADH2 DUPR11.1 Os11g0210500 LOC_Os11g10510,ADH1 DUPR11.3 Os11g0210300 LOC_Os11g10480 OsJ_032001,Os11g0210600 OSNPB_110210600,Os11g0210300 OSNPB_110210300,Os11g0210500 OSNPB_110210500 ENOG411DZ71 PTST,MKM21.80 Q94AX2,A0A1R7T3C7,A0A1R7T3C8 PTST_ARATH,A0A1R7T3C7_ARATH,A0A1R7T3C8_ARATH Protein PTST, chloroplastic (PROTEIN TARGETING TO STARCH),PROTEIN TARGETING TO STARCH (PTST) DISRUPTION PHENOTYPE: 100-fold reduction of starch-bound GBSS1 protein and production of amylose-free starch. {ECO:0000269|PubMed:25710501}. FUNCTION: Involved in targeting GBSS1 to the starch granule (PubMed:25710501). Was originally thought to be a carbohydrate-binding scaffold protein, but it has been shown that it is mainly found as a soluble protein and that interaction with GBSS1 is a pre-requisite for subsequent starch granule binding (PubMed:19038037, PubMed:25710501). Dissociation from starch as a function of pH, Mg(2+) concentration or redox state is not observed (PubMed:19038037). Interacts primarily with amylopectin and is required for amylose synthesis (PubMed:25710501). {ECO:0000269|PubMed:19038037, ECO:0000269|PubMed:25710501}. 31524,23984,31870 Protein PTST, chloroplastic (PROTEIN TARGETING TO STARCH),PROTEIN TARGETING TO STARCH (PTST) chloroplast [GO:0009507]; chloroplast starch grain [GO:0009569]; chloroplast stroma [GO:0009570]; polysaccharide binding [GO:0030247]; starch binding [GO:2001070]; regulation of starch biosynthetic process [GO:0010581]; starch biosynthetic process [GO:0019252] locus:2167067; AT5G39790 Inherit from KOG: Protein kinase AMP-activated beta NA NA NA NA NA NA NA ENOG411DZ76 BZR2,BZR1,BES1 Q9LN63,Q8S307,F4HP45 BZR2_ARATH,BZR1_ARATH,F4HP45_ARATH Protein BRASSINAZOLE-RESISTANT 2 (Protein 107) (Protein BIN2 SUBSTRATE 1) (Protein BRI1-EMS-SUPPRESSOR 1),Protein BRASSINAZOLE-RESISTANT 1 (Protein BIN2 SUBSTRATE 2),Brassinosteroid signaling positive regulator (BZR1) family protein DISRUPTION PHENOTYPE: Reduced brassinosteroid (BR)-mediated quiescent center (QC) cells division. {ECO:0000269|PubMed:24981610}.,DISRUPTION PHENOTYPE: In bzr1-1D, weak dwarf phenotype with reduced hypocotyl and petiole lengths and dark green curled leaves when light-grown. Increased cell elongation in the dark. Hypersensitive to brassinosteroid (BR). {ECO:0000269|PubMed:15681342}. FUNCTION: Positive regulator of brassinosteroid (BR) signaling. Transcription factor that activates target gene expression by binding specifically to the DNA sequence 5'-CANNTG-3'(E box) through its N-terminal domain. Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BIM1, BIM2 or BIM3. The C-terminal domain is probably involved in transcriptional activation (PubMed:12007405, PubMed:15680330, PubMed:18467490, PubMed:19170933). Recruits the transcription elongation factor IWS1 to control BR-regulated gene expression (PubMed:20139304). Forms a trimeric complex with IWS1 and ASHH2/SDG8 to regulate BR-regulated gene expression (PubMed:24838002). Promotes quiescent center (QC) self-renewal by cell divisions in the primary root. Binds to the E-boxes of the BRAVO promoter to repress its expression (PubMed:24981610). {ECO:0000269|PubMed:12007405, ECO:0000269|PubMed:15680330, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20139304, ECO:0000269|PubMed:24838002, ECO:0000269|PubMed:24981610}.,FUNCTION: Transcriptional repressor that binds to the brassinosteroid (BR) response element (BRRE) 5'-CGTG(T/C)G-3' in gene promoter. Regulates positively the brassinosteroid-signaling pathway. Mediates downstream growth responses and negative feedback regulation of brassinosteroid biosynthesis. Promotes growth. Modulates ovule initiation and development by monitoring the expression of genes related to ovule development (e.g. HLL, ANT, and AP2). {ECO:0000269|PubMed:15681342, ECO:0000269|PubMed:22914576}. MISCELLANEOUS: Phosphorylation by BIN2 increases protein degradation and/or interferes with the nuclear localization. 36486,39240 Protein BRASSINAZOLE-RESISTANT 2 (Protein 107) (Protein BIN2 SUBSTRATE 1) (Protein BRI1-EMS-SUPPRESSOR 1),Protein BRASSINAZOLE-RESISTANT 1 (Protein BIN2 SUBSTRATE 2),Brassinosteroid signaling positive regulator (BZR1) family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; cellular response to brassinosteroid stimulus [GO:0071367]; quiescent center organization [GO:1904961]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; negative regulation of transcription, DNA-templated [GO:0045892]; plant ovule development [GO:0048481]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; seed development [GO:0048316]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; defense response to bacterium [GO:0042742]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed in cotyledons, leaves, hypocotyls and roots. {ECO:0000269|PubMed:12007405}.,TISSUE SPECIFICITY: Accumulates in the growing region of the hypocotyl. {ECO:0000269|PubMed:11970900}. locus:2037279;,locus:2016472; AT1G19350,AT1G75080 BRASSINAZOLE-RESISTANT 1-like NA NA NA NA NA NA NA ENOG411DZ75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wall-associated receptor kinase Os12g0615000 protein (Protein kinase domain containing protein, expressed),Os03g0643200 protein Q2QM74,A0A0P0W0M7 Q2QM74_ORYSJ,A0A0P0W0M7_ORYSJ Os12g0615000 LOC_Os12g42050 OsJ_36871 OSNPB_120615000,Os03g0643200 OSNPB_030643200 ENOG411DZ7Z CIPK24,SOS2 Q9LDI3,A0A1P8BGJ7 CIPKO_ARATH,A0A1P8BGJ7_ARATH CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.11.1) (Protein SALT OVERLY SENSITIVE 2) (SNF1-related kinase 3.11),Non-specific serine/threonine protein kinase (EC 2.7.11.1) Do not display altered sensitivity for inhibition of root growth by osmotic stress compared to wild-type. Sensitive to salt stress and limited potassium-J. Zhu -2000 FUNCTION: Involved in the regulatory pathway for the control of intracellular Na(+) and K(+) homeostasis and salt tolerance. Activates the vacuolar H(+)/Ca(2+) antiporter CAX1 and operates in synergy with CBL4/SOS3 to activate the plasma membrane Na(+)/H(+) antiporter SOS1. CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Phosphorylates CBL1, CBL4 and CBL10. {ECO:0000269|PubMed:10725350, ECO:0000269|PubMed:12034882, ECO:0000269|PubMed:14583601, ECO:0000269|PubMed:22253446}. 2.7.11.1 50635,42539 CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.11.1) (Protein SALT OVERLY SENSITIVE 2) (SNF1-related kinase 3.11),Non-specific serine/threonine protein kinase (EC 2.7.11.1) nucleus [GO:0005634]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; response to salt stress [GO:0009651],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transduction [GO:0007165] locus:2155233; AT5G35410 CBL-interacting protein kinase CBL-interacting protein kinase 24 (EC 2.7.11.1) (OsCIPK24) Q69Q47 CIPKO_ORYSJ CIPK24 Os06g0606000 LOC_Os06g40370 P0029C06.1 P0481H08.35 FUNCTION: Involved in the regulatory pathway for the control of intracellular Na(+) and K(+) homeostasis and salt tolerance. Operates in synergy with CBL4 to activate the plasma membrane Na(+)/H(+) antiporter SOS1. CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. {ECO:0000269|PubMed:17142477}. ENOG411DZ7Y HACL Q9LF46 HACL_ARATH 2-hydroxyacyl-CoA lyase (EC 4.1.-.-) (2-hydroxyphytanoyl-CoA lyase) (2-HPCL) (Oxalyl-CoA decarboxylase) FUNCTION: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. {ECO:0000250}. ARA:AT5G17380-MONOMER; R-ATH-389599; 4.1.-.- 61470 2-hydroxyacyl-CoA lyase (EC 4.1.-.-) (2-hydroxyphytanoyl-CoA lyase) (2-HPCL) (Oxalyl-CoA decarboxylase) cytosol [GO:0005829]; carboxy-lyase activity [GO:0016831]; magnesium ion binding [GO:0000287]; thiamine pyrophosphate binding [GO:0030976] locus:2167205; AT5G17380 2-hydroxyacyl-CoA 2-hydroxyacyl-CoA lyase (EC 4.1.-.-) (2-hydroxyphytanoyl-CoA lyase) (2-HPCL) (Oxalyl-CoA decarboxylase),Os01g0505400 protein (cDNA clone:J013001O02, full insert sequence),Os01g0505400 protein (Fragment) Q0JMH0,B7EAG8,A0A0P0V3A0 HACL_ORYSJ,B7EAG8_ORYSJ,A0A0P0V3A0_ORYSJ Os01g0505400 LOC_Os01g32080,Os01g0505400 OSNPB_010505400 FUNCTION: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. {ECO:0000250}. ENOG411DZ7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 Os03g0811550 protein Q7XZH1 Q7XZH1_ORYSJ Os03g0811550 LOC_Os03g59690 OSJNBb0033J23.11 OSNPB_030811550 ENOG411DZ7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0346900 protein Q6ES95 Q6ES95_ORYSJ Os09g0346900 Os09g0346900 OsJ_28996 OSNPB_090346900 P0512H04.11 ENOG411DZ7Q F4J4B9,A0A1I9LT08,A0A1I9LT11,A0A1I9LT10,A0A1I9LT09 F4J4B9_ARATH,A0A1I9LT08_ARATH,A0A1I9LT11_ARATH,A0A1I9LT10_ARATH,A0A1I9LT09_ARATH Shugoshin 31195,31914,31351,20385,19666 Shugoshin AT3G44960 NA Expressed protein (Os10g0457400 protein) (cDNA clone:001-117-E05, full insert sequence),Os06g0526200 protein Q7XDP3,A0A0P0WX72 Q7XDP3_ORYSJ,A0A0P0WX72_ORYSJ Os10g0457400 LOC_Os10g31930 Os10g0457400 OSNPB_100457400,Os06g0526200 OSNPB_060526200 ENOG411DZ7P EMB2001 O81004,Q9LYE2 Y2287_ARATH,Q9LYE2_ARATH GTP-binding protein At2g22870 (Protein EMBRYO DEFECTIVE 2001),At5g11480/F15N18_70 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Putative GTP-binding protein) Embryo defective; Transition-D. Meinke-2004 33692,35661 GTP-binding protein At2g22870 (Protein EMBRYO DEFECTIVE 2001),At5g11480/F15N18_70 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Putative GTP-binding protein) cytoplasm [GO:0005737]; GTP binding [GO:0005525]; metal ion binding [GO:0046872],cytoplasm [GO:0005737]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787] locus:2059221;,locus:2144271; AT2G22870,AT5G11480 GTP-binding protein GTP-binding protein, putative, expressed (Os03g0232500 protein) (cDNA clone:002-174-C08, full insert sequence),Os01g0732200 protein (Putative GTP-binding protein) (cDNA clone:J013111I12, full insert sequence) Q10PJ0,Q5JM78 Q10PJ0_ORYSJ,Q5JM78_ORYSJ Os03g0232500 LOC_Os03g13000 Os03g0232500 OSNPB_030232500,Os01g0732200 OSJNBb0036G09.5 OSNPB_010732200 ENOG411DZ7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DZ7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain CBS domain containing protein-like (Os08g0529200 protein) Q6ZIB3 Q6ZIB3_ORYSJ Os08g0529200 OJ1770_H02.18 OSNPB_080529200 ENOG411DZ7U KTI12 Q9LMH0 KTI12_ARATH Protein KTI12 homolog (AtKTI12) (At1g13870) (Protein DEFORMED ROOTS AND LEAVES 1) (AtDRL1) (Protein ELONGATA4) DISRUPTION PHENOTYPE: Defective organ formation due to disorganized shoot, inflorescence, flower, and root meristems leading to stunted roots, few root hairs, lanceolate leaves, and a highly enlarged, disorganized shoot apex that does not produce an inflorescence (PubMed:12615938, PubMed:8392411, PubMed:10353913, PubMed:11589569, PubMed:15894610, PubMed:25518926). Altered cell division and cell differentiation in leaves (PubMed:25518926). No detectable 5-carbamoylmethyluridine (ncm5U) modified nucleosides (PubMed:20836892). {ECO:0000269|PubMed:10353913, ECO:0000269|PubMed:11589569, ECO:0000269|PubMed:12615938, ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:20836892, ECO:0000269|PubMed:25518926, ECO:0000269|PubMed:8392411}. Narrow leaf lamina phenotype. Abnormal root and leaf growth-C. Dean-1993 FUNCTION: Elongator-associated factor that is not a structural subunit but rather transiently contacts Elongator, presumably to promote its interaction with elongation competent pol II (PubMed:25518926). Regulates both meristem activity and organ growth; acts as a positive regulator of adaxial leaf patterning by modulating both cell division and differentiation (PubMed:12615938, PubMed:8392411, PubMed:11589569, PubMed:15894610, PubMed:25518926). Required for an early step in synthesis of 5-carbamoylmethyl (ncm5) groups present on uridines (ncm5U) at the wobble position in tRNA (PubMed:20836892). {ECO:0000250|UniProtKB:P34253, ECO:0000269|PubMed:11589569, ECO:0000269|PubMed:12615938, ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:20836892, ECO:0000269|PubMed:25518926, ECO:0000269|PubMed:8392411}. 34064 Protein KTI12 homolog (AtKTI12) (At1g13870) (Protein DEFORMED ROOTS AND LEAVES 1) (AtDRL1) (Protein ELONGATA4) cytoplasm [GO:0005737]; Elongator holoenzyme complex [GO:0033588]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; 5-carbamoylmethyl uridine residue modification [GO:0080178]; leaf development [GO:0048366]; meristem structural organization [GO:0009933]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; root meristem growth [GO:0010449]; transcription, DNA-templated [GO:0006351]; tRNA modification [GO:0006400]; tRNA wobble uridine modification [GO:0002098] DEVELOPMENTAL STAGE: Detected in globular-, heart-, and torpedo-stage embryos, in the outer integuments of ovules and in the funiculi. Also expressed in the peripheral zone of the shoot apical meristem (SAM) corresponding to the central zone. In elongating tissues, restricted at the periphery of the vascular bundle. In shoot and inflorescence apices, mostly present in the L2 layer, and, at lower levels, in the L1 layer, but absent of the L3 layer. In young leaf primordia, localized in the basal part of the dorsal side. In older leaf primordia, detected in vascular bundles and in the mesophyll between the vascular bundles. In expanding leaves, confined to stomatal guard cells, and individual palisade and spongy mesophyll parenchyma cells. In general, present around the vascular bundles. Expressed in young flower organs but not in mature sepals and petals. Gradient accumulation in the stamens and carpels, with the highest activity at the tip of the organs. Present in the meristematic and elongation zones of the primary root and in the vascular bundle of the differentiation zone. {ECO:0000269|PubMed:12615938}. TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apices, stems, inflorescence apices, leaves and flowers. {ECO:0000269|PubMed:12615938}. locus:2014804; AT1G13870 Chromatin associated protein KTI12 Protein KTI12 homolog (OsKTI12) (Protein DEFORMED ROOTS AND LEAVES 1) (OsDRL1),Os11g0312340 protein B9GAG9,A0A0P0Y1I8 KTI12_ORYSJ,A0A0P0Y1I8_ORYSJ KTI12 DRL1 Os11g0312782 OsJ_33743,Os11g0312340 OSNPB_110312340 FUNCTION: Elongator-associated factor that is not a structural subunit but rather transiently contacts Elongator, presumably to promote its interaction with elongation competent pol II (PubMed:25518926). Regulates both meristem activity and organ growth; acts as a positive regulator of adaxial leaf patterning. Required for an early step in synthesis of 5-carbamoylmethyl (ncm5) groups present on uridines (ncm5U) at the wobble position in tRNA (By similarity). {ECO:0000250|UniProtKB:Q9LMH0, ECO:0000269|PubMed:25518926}. ENOG411DZ7T COX3; P92514 COX3_ARATH Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) FUNCTION: Subunits I, II and III form the functional core of the enzyme complex. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07687) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. ARA:AT2G07687-MONOMER;ARA:ATMG00730-MONOMER;MetaCyc:ATMG00730-MONOMER; 1.9.3.1 29961 Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; cytochrome-c oxidase activity [GO:0004129]; aerobic electron transport chain [GO:0019646] AT2G07687ATMG00730; Subunits I II and III form the functional core of the enzyme complex (By similarity) Cytochrome c oxidase subunit 3 Q8HCR6 Q8HCR6_ORYSJ cox3 FUNCTION: Subunits I, II and III form the functional core of the enzyme complex. {ECO:0000256|RuleBase:RU003375}. ENOG411DZ7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) F-box domain containing protein, expressed (Os10g0519800 protein) (cDNA clone:002-140-A01, full insert sequence),Os10g0520100 protein Q9FWD4,A0A0P0XWR3 Q9FWD4_ORYSJ,A0A0P0XWR3_ORYSJ Os10g0519800 LOC_Os10g37540 Os10g0519800 OsJ_32179 OSJNBb0018B10.6 OSNPB_100519800,Os10g0520100 OSNPB_100520100 ENOG411DZ7J HSFA3 Q8GYY1 HSFA3_ARATH Heat stress transcription factor A-3 (AtHsfA3) (AtHsf-17) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. MISCELLANEOUS: Plants overexpressing HSFA3 show increased thermotolerance. R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 46458 Heat stress transcription factor A-3 (AtHsfA3) (AtHsf-17) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; response to heat [GO:0009408]; transcription, DNA-templated [GO:0006351] locus:2144603; AT5G03720 heat stress transcription factor Heat stress transcription factor A-3 (Heat stress transcription factor 7) (OsHsf-07) Q6H6Q7 HSFA3_ORYSJ HSFA3 HSF07 Os02g0527300 LOC_Os02g32590 P0458B05.23 P0475F05.3 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DZ7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) AAA-type ATPase-like (Os07g0192000 protein) (cDNA clone:J013027N01, full insert sequence) Q69S65 Q69S65_ORYSJ Os07g0192000 Os07g0192000 OSJNBa0049I08.13 OSNPB_070192000 ENOG411DZ7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411DZ7N Q9LV59 Q9LV59_ARATH Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 39083 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2091757; AT3G24490 Alcohol dehydrogenase transcription factor Myb/SANT-like NA NA NA NA NA NA NA ENOG411DZ7C MBK5.19 Q8W4S5,A0A1P8BC30,A0A1P8BC39 Y5371_ARATH,A0A1P8BC30_ARATH,A0A1P8BC39_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g63710 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 68434,64286,68765 Probable LRR receptor-like serine/threonine-protein kinase At5g63710 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2160644; AT5G63710 LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DZ7B Q8RXZ9,Q9FI73,A0A1P8BB39,A0A1I9LRT1 TDPC1_ARATH,TDPC2_ARATH,A0A1P8BB39_ARATH,A0A1I9LRT1_ARATH Mitochondrial thiamine diphosphate carrier 1,Mitochondrial thiamine diphosphate carrier 2,Mitochondrial substrate carrier family protein FUNCTION: Mitochondrial transporter that mediates uptake of thiamine diphosphate (ThDP) into mitochondria. {ECO:0000269|PubMed:22426856}. R-ATH-196819; 36560,37493,30124,38999 Mitochondrial thiamine diphosphate carrier 1,Mitochondrial thiamine diphosphate carrier 2,Mitochondrial substrate carrier family protein integral component of mitochondrial inner membrane [GO:0031305]; mitochondrion [GO:0005739]; thiamine pyrophosphate transporter activity [GO:0090422]; thiamine transmembrane transporter activity [GO:0015234]; mitochondrial transport [GO:0006839]; thiamine pyrophosphate transport [GO:0030974],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2089453;,locus:2154374; AT3G21390,AT5G48970 mitochondrial thiamine pyrophosphate Os01g0934200 protein (Putative mitochondrial deoxynucleotide carrier) (cDNA clone:J023039I10, full insert sequence) Q5JMQ9 Q5JMQ9_ORYSJ Os01g0934200 OsJ_04667 OSNPB_010934200 P0423A12.32 P0492G09.2 ENOG411DZ7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANTH domain NA NA NA NA NA NA NA ENOG411DZ7G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411DZ7F TON1 Recruiting Motif 28,TRM28 Q9LZS1,A0A1R7T3F9 Q9LZS1_ARATH,A0A1R7T3F9_ARATH Histone-lysine N-methyltransferase SETD1B-like protein (Uncharacterized protein At5g03670) (Uncharacterized protein F17C15_90),Histone-lysine N-methyltransferase SETD1B-like protein 59093,47932 Histone-lysine N-methyltransferase SETD1B-like protein (Uncharacterized protein At5g03670) (Uncharacterized protein F17C15_90),Histone-lysine N-methyltransferase SETD1B-like protein methyltransferase activity [GO:0008168] locus:2144628; AT5G03670 NA NA NA NA NA NA NA NA ENOG411DZ7E NAT1 Q9SHZ3 NAT1_ARATH Nucleobase-ascorbate transporter 1 (AtNAT1) R-ATH-196836; 57131 Nucleobase-ascorbate transporter 1 (AtNAT1) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in cotyledons 4 days after imbibition (DAI). Expressed in the minor and major veins of cotyledons and leaves, in the shoot apex and pedicels. Expressed in the root meristems, root tips and lateral root primordia. {ECO:0000269|PubMed:16982705}. locus:2060076; AT2G05760 nucleobase-ascorbate transporter NA NA NA NA NA NA NA ENOG411E1EU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0141800 protein),Os03g0142200 protein (Fragment) Q10RY4,A0A0P0VST8 Q10RY4_ORYSJ,A0A0P0VST8_ORYSJ Os03g0141800 LOC_Os03g04840 Os03g0141800 OSNPB_030141800,Os03g0142200 OSNPB_030142200 ENOG411EK76 Q8L5Y8 Q8L5Y8_ARATH Thioredoxin superfamily protein (Uncharacterized protein At5g65840) 29883 Thioredoxin superfamily protein (Uncharacterized protein At5g65840) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; antioxidant activity [GO:0016209]; oxidation-reduction process [GO:0055114] locus:2152054; AT5G65840 Inherit from euNOG: family with sequence similarity 213 member NA NA NA NA NA NA NA ENOG411E1EV IJ Q9LDY9 IOJAC_ARATH Protein Iojap, chloroplastic FUNCTION: May be a ribosome silencing factor (Potential). Involved in plastid biogenesis (By similarity). {ECO:0000250, ECO:0000305}. 26378 Protein Iojap, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ribosomal large subunit binding [GO:0043023]; negative regulation of ribosome biogenesis [GO:0090071]; negative regulation of translation [GO:0017148] locus:2089235; AT3G12930 Pfam:DUF143 Os09g0493600 protein (cDNA clone:J013036E07, full insert sequence) Q0J0L9 Q0J0L9_ORYSJ Os09g0493600 Os09g0493600 OsJ_29867 OSNPB_090493600 ENOG411E1EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein Os09g0386700 protein,Os09g0384100 protein,Os09g0384300 protein,OSJNBa0071I13.20 protein (Os04g0657600 protein),Os09g0340800 protein,Os09g0392900 protein,Os09g0385600 protein,Os02g0598600 protein (Os02g0598900 protein),Os09g0391600 protein,Os09g0392200 protein B9G3D3,A3BYE6,Q6H5N7,Q7XPX5,Q6EQC5,Q6H409,Q6H596,Q6K5J3,A0A0P0XL70,A0A0P0XM13 B9G3D3_ORYSJ,A3BYE6_ORYSJ,Q6H5N7_ORYSJ,Q7XPX5_ORYSJ,Q6EQC5_ORYSJ,Q6H409_ORYSJ,Q6H596_ORYSJ,Q6K5J3_ORYSJ,A0A0P0XL70_ORYSJ,A0A0P0XM13_ORYSJ Os09g0386700 OsJ_29219 OSNPB_090386700,Os09g0384100 OsJ_29205 OSNPB_090384100,Os09g0384300 OJ1118_F11.24 OsJ_29206 OSNPB_090384300,Os04g0657600 Os04g0657600 OsJ_16468 OSJNBa0071I13.20 OSNPB_040657600,Os09g0340800 OJ1104_G11.31 OSNPB_090340800 P0448B03.4,B1175F05.30 Os09g0392900 OSNPB_090392900,Os09g0385600 OsJ_29213 OSJNBa0048A13.8 OSNPB_090385600,Os02g0598600 Os02g0598900 Os02g0598600 OJ1212_D02.20 OJ1212_D02.34 OsJ_07392 OSJNBa0038P01.18 OSJNBa0038P01.4 OSNPB_020598600 OSNPB_020598900,Os09g0391600 OSNPB_090391600,Os09g0392200 OSNPB_090392200 ENOG411E1EA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411E1EE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May be involved in modulation of pathogen defense and leaf cell death (By similarity) NA NA NA NA NA NA NA ENOG411E1ED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Targeting protein for Xklp2 (TPX2) Os11g0592600 protein (Targeting protein for Xklp2 containing protein, expressed) (cDNA clone:J013155D03, full insert sequence) Q2R1U6 Q2R1U6_ORYSJ Os11g0592600 LOC_Os11g38010 Os11g0592600 OSNPB_110592600 ENOG411E1EG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os03g0183300 protein (Fragment),AP2 domain containing protein, expressed (AP2/ERF domain protein) (EREBP-like protein) (Os03g0183300 protein) (Putative EREBP-like protein) (cDNA clone:001-205-A05, full insert sequence) (cDNA clone:001-208-B04, full insert sequence) (cDNA clone:001-208-C04, full insert sequence) Q0DUJ4,Q10QU2 Q0DUJ4_ORYSJ,Q10QU2_ORYSJ Os03g0183300 OSNPB_030183300,Os03g0183300 LOC_Os03g08500 OsJ_09678 OSJNBa0032G08.12 OSNPB_030183300 ENOG411E1EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flavin-containing monooxygenase FMO GS-OX-like Os10g0554300 protein (Fragment) A0A0P0XXK5 A0A0P0XXK5_ORYSJ Os10g0554300 OSNPB_100554300 ENOG411E1EH MYB62 Q9C9G7 MYB62_ARATH Transcription factor MYB62 (Myb-related protein 62) (AtMYB62) FUNCTION: Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. 33239 Transcription factor MYB62 (Myb-related protein 62) (AtMYB62) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cellular response to phosphate starvation [GO:0016036]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; negative regulation of gibberellin biosynthetic process [GO:0010373]; negative regulation of transcription, DNA-templated [GO:0045892]; phosphate ion homeostasis [GO:0055062]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to salicylic acid [GO:0009751]; root morphogenesis [GO:0010015]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. locus:2199357; AT1G68320 Transcription factor Os01g0128000 protein Q0JR06 Q0JR06_ORYSJ Os01g0128000 Os01g0128000 OsJ_00224 OSNPB_010128000 ENOG411E1EN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Transcription factor TIP2 (Basic helix-loop-helix protein 142) (OsbHLH142) (Basic helix-loop-helix protein TIP2) (TDR INTERACTING PROTEIN2) Q5JNS0 TIP2_ORYSJ TIP2 BHLH142 LOC_Os01g18870 Os01g0293100 P0706B05.43 DISRUPTION PHENOTYPE: Has normal vegetative growth, inflorescence and flower morphology, however has smaller anthers and does not produce mature pollen grains during reproductive stage. After stage 6, during which anther forms four somatic layers, the three inner anther wall layers remain undifferentiated. Meiosis progresses normally from leptotene stage to metaphase I, but is arrasted at anaphase I and no cytokinesis occurs at prophase II, resulting in degenerated meiocytes. {ECO:0000269|PubMed:24755456}. FUNCTION: Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. ENOG411E7H8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os02g0536300 protein A0A0P0VK24 A0A0P0VK24_ORYSJ Os02g0536300 OSNPB_020536300 ENOG411EJY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L9 N-terminal domain NA NA NA NA NA NA NA ENOG411EJYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LSM domain NA NA NA NA NA NA NA ENOG411EJB9 SMR11 Q9SKN7 SMR11_ARATH Cyclin-dependent protein kinase inhibitor SMR11 (Protein SIAMESE-RELATED 11) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000269|PubMed:26546445}. 16893 Cyclin-dependent protein kinase inhibitor SMR11 (Protein SIAMESE-RELATED 11) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:2057537; AT2G28330 NA NA NA NA NA NA NA NA ENOG411EJB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJB0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJB5 ATTI7 Q42330,F4HTA0 DF192_ARATH,F4HTA0_ARATH Defensin-like protein 192 (Trypsin inhibitor ATTI-7),Scorpion toxin-like knottin superfamily protein 10993,11064 Defensin-like protein 192 (Trypsin inhibitor ATTI-7),Scorpion toxin-like knottin superfamily protein extracellular region [GO:0005576]; ion channel inhibitor activity [GO:0008200]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],extracellular region [GO:0005576]; ion channel inhibitor activity [GO:0008200]; defense response [GO:0006952] locus:2015433; AT1G47540 Scorpion toxin-like domain NA NA NA NA NA NA NA ENOG411EJBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBM AGP26 Q94F57 AGP26_ARATH Classical arabinogalactan protein 26 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 13983 Classical arabinogalactan protein 26 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; response to karrikin [GO:0080167] locus:2043383; AT2G47930 NA NA NA NA NA NA NA NA ENOG411EJBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Scorpion toxin-like domain NA NA NA NA NA NA NA ENOG411EJBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411EJBA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411EJBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411EJBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family (UPF0172) NA NA NA NA NA NA NA ENOG411EJBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EJBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411EJBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBQ Q84R17 Q84R17_ARATH At4g24275 (Uncharacterized protein At4g24275) 14395 At4g24275 (Uncharacterized protein At4g24275) response to water deprivation [GO:0009414] locus:504955337; AT4G24275 NA NA NA NA NA NA NA NA ENOG411EJBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Early fruit mRNA NA NA NA NA NA NA NA ENOG411EJBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxygen evolving enhancer protein 3 (PsbQ) NA NA NA NA NA NA NA ENOG411EJBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0654400 protein Q0JKR6 Q0JKR6_ORYSJ Os01g0654400 Os01g0654400 OsJ_02860 OSNPB_010654400 ENOG411EJBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EABD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EABF RLP56,RLP21,RLP14,RPP27 A0A1P8BAV7,F4IRP9,A0A1P8B265,A0A1P8BAV8,A0A1P8AWN1,A0A1P8ANW0,A0A1P8BAW0,A0A1P8BAV1,A0A1P8BAW2,A0A1P8BAW9,A0A1P8B226,Q3ECQ0,F4K4T3,F4HTV4 A0A1P8BAV7_ARATH,F4IRP9_ARATH,A0A1P8B265_ARATH,A0A1P8BAV8_ARATH,A0A1P8AWN1_ARATH,A0A1P8ANW0_ARATH,A0A1P8BAW0_ARATH,A0A1P8BAV1_ARATH,A0A1P8BAW2_ARATH,A0A1P8BAW9_ARATH,A0A1P8B226_ARATH,Q3ECQ0_ARATH,F4K4T3_ARATH,F4HTV4_ARATH Receptor like protein 56,Receptor like protein 21,Receptor like protein 14,LRR receptor-like Serine/Threonine-kinase,Resistance to peronospora parasitica protein 105212,104511,109593,101989,106926,23144,77287,106743,99227,83945,91528,51658,102450,108615 Receptor like protein 56,Receptor like protein 21,Receptor like protein 14,LRR receptor-like Serine/Threonine-kinase,Resistance to peronospora parasitica protein integral component of membrane [GO:0016021],chloroplast [GO:0009507]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2040075;,locus:2155909;,locus:2037308; AT2G25470,AT1G54470,AT5G49290,AT1G74180 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EABA Q9SSR8 DRL6_ARATH Probable disease resistance protein At1g52660 FUNCTION: Possible disease resistance protein. {ECO:0000250}. 41896 Probable disease resistance protein At1g52660 ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952] AT1G52660 Archaeal ATPase NA NA NA NA NA NA NA ENOG411EABC FBX12,T8M16_220 Q9SA03,Q9FYI3,Q9MAP2,P0C2C9,Q6ICX6,Q9SVX4,P0C2D0,Q3ECH0,Q9FMC1,P0C2G3,Q9MAP1,P0C2G2,Q9LTF5,Q9LER9,A0A1I9LPQ0 FB27_ARATH,FB23_ARATH,FB32_ARATH,FBX12_ARATH,FB329_ARATH,FB205_ARATH,FB22_ARATH,FB75_ARATH,FB269_ARATH,FB308_ARATH,FB33_ARATH,FB21_ARATH,FB292_ARATH,Q9LER9_ARATH,A0A1I9LPQ0_ARATH Putative F-box protein At1g31090,Putative F-box protein At1g30945,Putative F-box protein At1g33010,F-box only protein 12,F-box protein At3g57580,F-box protein At3g57590,Putative F-box protein At1g30930,F-box protein At1g67130,Putative F-box protein At5g38810,Putative F-box protein At1g30925,Putative F-box protein At1g33020,Putative F-box protein At1g30920,Putative F-box protein At5g52620,F-box associated ubiquitination effector family protein (Uncharacterized protein T8M16_220),F-box and associated interaction domains-containing protein 36401,19244,41417,46505,46702,46319,43300,52357,31320,60397,64126,46005,42747,24691,41624 Putative F-box protein At1g31090,Putative F-box protein At1g30945,Putative F-box protein At1g33010,F-box only protein 12,F-box protein At3g57580,F-box protein At3g57590,Putative F-box protein At1g30930,F-box protein At1g67130,Putative F-box protein At5g38810,Putative F-box protein At1g30925,Putative F-box protein At1g33020,Putative F-box protein At1g30920,Putative F-box protein At5g52620,F-box associated ubiquitination effector family protein (Uncharacterized protein T8M16_220),F-box and associated interaction domains-containing protein integral component of membrane [GO:0016021] locus:2029574;,locus:2038006;,locus:2076651;,locus:2015731;,locus:2038011;,locus:2015756;,locus:2149649;,locus:2103605; AT1G31090,AT1G30945,AT1G33010,AT1G30935,AT3G57580,AT3G57590,AT1G30930,AT1G67130,AT5G38810,AT1G30925,AT1G33020,AT1G30920,AT5G52620,AT3G56890 F-box associated domain NA NA NA NA NA NA NA ENOG411EABJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EABK APUM11 Q9LDW3 PUM11_ARATH Pumilio homolog 11 (APUM-11) (AtPUM11) FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 63129 Pumilio homolog 11 (APUM-11) (AtPUM11) cytoplasm [GO:0005737]; RNA binding [GO:0003723]; regulation of translation [GO:0006417] locus:2138258; AT4G08840 Pumilio-family RNA binding repeat NA NA NA NA NA NA NA ENOG411EABT TUBB8,TUBB6,TUBB3,TUBB2,TUBB7 P29516,P29514,Q9ASR0,Q56YW9,P29515 TBB8_ARATH,TBB6_ARATH,TBB3_ARATH,TBB2_ARATH,TBB7_ARATH Tubulin beta-8 chain (Beta-8-tubulin),Tubulin beta-6 chain (Beta-6-tubulin),Tubulin beta-3 chain,Tubulin beta-2 chain,Tubulin beta-7 chain (Beta-7-tubulin) FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.,FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. {ECO:0000250|UniProtKB:P02557}. MISCELLANEOUS: There are nine genes coding for beta-tubulin.,MISCELLANEOUS: There are nine genes coding for beta-tubulin. The sequences coded by genes 2 and 3 are identical. R-ATH-6798695; 50607,50586,50734,50747 Tubulin beta-8 chain (Beta-8-tubulin),Tubulin beta-6 chain (Beta-6-tubulin),Tubulin beta-3 chain,Tubulin beta-2 chain,Tubulin beta-7 chain (Beta-7-tubulin) Golgi apparatus [GO:0005794]; membrane [GO:0016020]; microtubule [GO:0005874]; tubulin complex [GO:0045298]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule cytoskeleton [GO:0015630]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017]; response to cold [GO:0009409]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017],cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; tubulin complex [GO:0045298]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] locus:505006632;,locus:2177003;,locus:2043082; AT5G23860,AT5G12250,AT5G62700,AT5G62690,AT2G29550 Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain Tubulin beta-5 chain (Beta-5-tubulin),Tubulin beta-6 chain (Beta-6-tubulin),Tubulin beta-4 chain (Beta-4-tubulin),Tubulin beta-7 chain (Beta-7-tubulin) (pTUB22),Tubulin beta-1 chain (Beta-1-tubulin),Tubulin beta-2 chain (Beta-2-tubulin),Tubulin beta-3 chain (Beta-3-tubulin) P46265,Q76FS3,P45960,P37832,Q43594,Q8H7U1,Q40665 TBB5_ORYSJ,TBB6_ORYSJ,TBB4_ORYSJ,TBB7_ORYSJ,TBB1_ORYSJ,TBB2_ORYSJ,TBB3_ORYSJ TUBB5 OSTB-50 R2242 TUB5 Os02g0167300 LOC_Os02g07060 OsJ_05524 OSJNBa0085K21.33,TUBB6 TUB6 Os05g0413200 LOC_Os05g34170 P0017D10.10,TUBB4 OSTB-16 R1623 RTUB-1 TUB4 Os01g0805900 LOC_Os01g59150 P0034E02.62,TUBB7 TUB7 Os03g0780600 LOC_Os03g56810 OSJNBa0091J19.2,TUBB1 OSTB-34 TUB1 Os01g0282800 LOC_Os01g18050 OSJNBa0004B13.5 P0581F09.13,TUBB2 TUB2 Os03g0105600 LOC_Os03g01530 OSJNBa0009C08.10,TUBB3 RTUB-2 TUB3 Os06g0671900 LOC_Os06g46000 OsJ_22330 OSJNBa0032M14.15 P0485A07.25 FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.,FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. {ECO:0000250|UniProtKB:P02557}. ENOG411EABQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_CA NA NA NA NA NA NA NA ENOG411EABR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EABX AT1,AT2 Q9FJ72,Q9FJ73 WAXS1_ARATH,WAXS2_ARATH Probable long-chain-alcohol O-fatty-acyltransferase 1 (EC 2.3.1.75) (Wax synthase 1),Probable long-chain-alcohol O-fatty-acyltransferase 2 (EC 2.3.1.75) (Wax synthase 2) FUNCTION: Catalyzes the final step in the synthesis of long-chain linear esters (waxes). {ECO:0000250}. ARA:AT5G55380-MONOMER;,ARA:AT5G55370-MONOMER; 2.3.1.75; 2.3.1.75 38734,39807 Probable long-chain-alcohol O-fatty-acyltransferase 1 (EC 2.3.1.75) (Wax synthase 1),Probable long-chain-alcohol O-fatty-acyltransferase 2 (EC 2.3.1.75) (Wax synthase 2) integral component of membrane [GO:0016021]; arachidoyl-CoA:1-dodecanol O-acyltransferase activity [GO:0102966]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; wax ester synthase activity [GO:0103095]; lipid metabolic process [GO:0006629] locus:2173962;,locus:2173947; AT5G55380,AT5G55370 Inherit from euNOG: long-chain-alcohol O-fatty-acyltransferase NA NA NA NA NA NA NA ENOG411EABY T2J13.240 Q9SMT1 Q9SMT1_ARATH MYB transcription factor (Myb domain protein 45) (Myb-like protein) 29876 MYB transcription factor (Myb domain protein 45) (Myb-like protein) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to salicylic acid [GO:0009751] locus:2101273; AT3G48920 myb domain protein 45 NA NA NA NA NA NA NA ENOG411EABZ SAL3,MBM17.9 Q8GY63,F4KC75 DPNP3_ARATH,F4KC75_ARATH Probable SAL3 phosphatase (3'(2'),5'-bisphosphate nucleotidase 3) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 3) (DPNPase 3) (Inositol polyphosphate 1-phosphatase 3) (IPPase 3) (Inositol-1,4-bisphosphate 1-phosphatase 3) (EC 3.1.3.57),Inositol monophosphatase family protein FUNCTION: Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP. Is also able to hydrolyze inositol 1,4-bisphosphate. {ECO:0000250}. PATHWAY: Signal transduction; phosphatidylinositol signaling pathway. ARA:AT5G63990-MONOMER; 3.1.3.7; 3.1.3.57 38385,31826 Probable SAL3 phosphatase (3'(2'),5'-bisphosphate nucleotidase 3) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 3) (DPNPase 3) (Inositol polyphosphate 1-phosphatase 3) (IPPase 3) (Inositol-1,4-bisphosphate 1-phosphatase 3) (EC 3.1.3.57),Inositol monophosphatase family protein 3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; inositol-1,4-bisphosphate 1-phosphatase activity [GO:0004441]; metal ion binding [GO:0046872]; phosphatidylinositol phosphorylation [GO:0046854]; sulfur compound metabolic process [GO:0006790],3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; phosphatidylinositol phosphorylation [GO:0046854]; sulfur compound metabolic process [GO:0006790] locus:2160831; AT5G63990 Inositol monophosphatase family NA NA NA NA NA NA NA ENOG411EF9Z Q9SHQ5 Q9SHQ5_ARATH F1K23.7 13083 F1K23.7 locus:4010713483; AT1G28815 NA NA NA NA NA NA NA NA ENOG411EF9X BHLH99,MNA5.5 Q9FKQ6,A0A1P8BDH6 BH099_ARATH,A0A1P8BDH6_ARATH Transcription factor bHLH99 (Basic helix-loop-helix protein 99) (AtbHLH99) (bHLH 99) (Transcription factor EN 18) (bHLH transcription factor bHLH099),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 33761,31552 Transcription factor bHLH99 (Basic helix-loop-helix protein 99) (AtbHLH99) (bHLH 99) (Transcription factor EN 18) (bHLH transcription factor bHLH099),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2168235; AT5G65320 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EF9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0220200 protein (Fragment),Os06g0263450 protein (Fragment),Os03g0181550 protein (Fragment),Os11g0591300 protein (Fragment),Os10g0416350 protein (Fragment),Os06g0598850 protein (Fragment),Os06g0260250 protein (Fragment),Os03g0162725 protein (Fragment) A0A0P0VV32,A0A0P0WUU3,A0A0P0VTY1,A0A0P0Y3Z8,A0A0P0XU95,A0A0P0WYP4,A0A0N7KLW1,A0A0P0VTC4 A0A0P0VV32_ORYSJ,A0A0P0WUU3_ORYSJ,A0A0P0VTY1_ORYSJ,A0A0P0Y3Z8_ORYSJ,A0A0P0XU95_ORYSJ,A0A0P0WYP4_ORYSJ,A0A0N7KLW1_ORYSJ,A0A0P0VTC4_ORYSJ Os03g0220200 OSNPB_030220200,Os06g0263450 OSNPB_060263450,Os03g0181550 OSNPB_030181550,Os11g0591300 OSNPB_110591300,Os10g0416350 OSNPB_100416350,Os06g0598850 OSNPB_060598850,Os06g0260250 OSNPB_060260250,Os03g0162725 OSNPB_030162725 ENOG411EF9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EF9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0159700 protein (Fragment) A0A0P0WSQ5 A0A0P0WSQ5_ORYSJ Os06g0159700 OSNPB_060159700 ENOG411EF9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin NA NA NA NA NA NA NA ENOG411EF9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EF9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FKBP-type peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411EF9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411EF9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZmEBE-1 protein Os07g0179700 protein (Fragment),Os12g0504900 protein (Fragment),Os11g0222680 protein A0A0P0X2S9,A0A0N7KU31,A0A0P0Y0I5 A0A0P0X2S9_ORYSJ,A0A0N7KU31_ORYSJ,A0A0P0Y0I5_ORYSJ Os07g0179700 OSNPB_070179700,Os12g0504900 OSNPB_120504900,Os11g0222680 OSNPB_110222680 ENOG411EF9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease NA NA NA NA NA NA NA ENOG411EF9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0666300 protein A0A0P0X9V0 A0A0P0X9V0_ORYSJ Os07g0666300 OSNPB_070666300 ENOG411EF9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q8LMF1 Q8LMF1_ORYSJ LOC_Os10g18820 Os10g0334500 OJ1325D05.19 OsJ_31115 OSNPB_100334500 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EF9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411EF9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LrgB-like family NA NA NA NA NA NA NA ENOG411EF9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0268750 protein,Os02g0267600 protein,Os02g0268000 protein A0A0N7KF26,A0A0P0VHD9,A0A0P0VHC8 A0A0N7KF26_ORYSJ,A0A0P0VHD9_ORYSJ,A0A0P0VHC8_ORYSJ Os02g0268750 OSNPB_020268750,Os02g0267600 OSNPB_020267600,Os02g0268000 OSNPB_020268000 ENOG411EF9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cobalamin synthesis protein cobW C-terminal domain NA NA NA NA NA NA NA ENOG411EF9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: senescence-associated protein NA NA NA NA NA NA NA ENOG411EF9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os09g0546900 protein (Putative auxin induced protein) Q651Q4 Q651Q4_ORYSJ Os09g0546900 OsJ_30219 OSJNBa0038K02.15 OSNPB_090546900 ENOG411EF9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EF9G MUP24.7 Q9FF54 Q9FF54_ARATH Proline-rich receptor-like kinase 15976 Proline-rich receptor-like kinase integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2175821; AT5G60650 NA NA NA NA NA NA NA NA ENOG411EF9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MAR-binding protein, putative, expressed (Os12g0299700 protein) (cDNA clone:J023082N05, full insert sequence) Q2QT96 Q2QT96_ORYSJ Os12g0299700 LOC_Os12g20410 Os12g0299700 OsJ_35832 OSNPB_120299700 ENOG411EF99 GRXS11 Q9M9Y9 GRS11_ARATH Monothiol glutaredoxin-S11 (AtGrxS11) (Protein ROXY 6) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 10890 Monothiol glutaredoxin-S11 (AtGrxS11) (Protein ROXY 6) cytoplasm [GO:0005737]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2033148; AT1G06830 Glutaredoxin NA NA NA NA NA NA NA ENOG411EF92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF395 NA NA NA NA NA NA NA ENOG411EF93 SAUR44 Q9LZF9 Q9LZF9_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (At5g03310) (SAUR-like auxin-responsive protein family) (Uncharacterized protein F12E4_40) 13097 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (At5g03310) (SAUR-like auxin-responsive protein family) (Uncharacterized protein F12E4_40) response to auxin [GO:0009733] locus:2142624; AT5G03310 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EF90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os06g0166400 protein (Putative AP2 domain containing protein RAP2.1) Q5VRR2 Q5VRR2_ORYSJ Os06g0166400 OSJNBa0015I14.36 OSNPB_060166400 P0680A03.10 ENOG411EF91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EF96 PSAN P49107,F4KC80 PSAN_ARATH,F4KC80_ARATH Photosystem I reaction center subunit N, chloroplastic (PSI-N),Photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) FUNCTION: May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna. Plays an important role in docking plastocyanin to the PSI complex. Does not bind pigments. {ECO:0000269|PubMed:10230065, ECO:0000269|PubMed:12324436}. MISCELLANEOUS: The N-terminal Edman sequence is 2 amino acids down-stream of the N-acetylated terminal peptide identified by mass spectrometry. This suggests an additional processing. MetaCyc:MONOMER-1095; 18429,19347 Photosystem I reaction center subunit N, chloroplastic (PSI-N),Photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) chloroplast thylakoid membrane [GO:0009535]; photosystem I [GO:0009522]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979],chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; photosystem I [GO:0009522]; thylakoid [GO:0009579]; photosynthesis [GO:0015979] locus:2164371; AT5G64040 Photosystem I reaction centre subunit N (PSAN or PSI-N) NA NA NA NA NA NA NA ENOG411EF97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FKBP-type peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411EF94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family 19.0 kDa class II heat shock protein (19.0 kDa heat shock protein) (OsHsp19.0) Q6Z6L5 HSP19_ORYSJ HSP19.0 Os02g0217900 LOC_Os02g12610 OsJ_05903 P0027A02.5 ENOG411EF95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0149500 protein (cDNA clone:J033109D03, full insert sequence) Q5VND4 Q5VND4_ORYSJ Os06g0149500 Os06g0149500 OsJ_20232 OSNPB_060149500 P0624B04.20 P0710H01.6 ENOG411E6VY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EEXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EDJI CAT3,CAT2 Q8GYB4,Q9ASS7 CAAT3_ARATH,CAAT2_ARATH Cationic amino acid transporter 3, mitochondrial,Cationic amino acid transporter 2, vacuolar FUNCTION: Permease involved in the transport of the cationic neutral or acidic amino acids. {ECO:0000269|PubMed:15377779}.,FUNCTION: Permease involved in the transport of the cationic amino acids. {ECO:0000250}. R-ATH-352230; 65285,67115 Cationic amino acid transporter 3, mitochondrial,Cationic amino acid transporter 2, vacuolar endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; nuclear envelope [GO:0005635]; amino acid transmembrane transporter activity [GO:0015171],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; amino acid transmembrane transporter activity [GO:0015171]; amino acid homeostasis [GO:0080144] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, and leaves. {ECO:0000269|PubMed:15377779}.,TISSUE SPECIFICITY: Expressed in roots, stems, flowers, leaves, and siliques. {ECO:0000269|PubMed:15377779}. locus:2167462;,locus:2196245; AT5G36940,AT1G58030 Amino acid permease NA NA NA NA NA NA NA ENOG411EDJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PEP-utilising enzyme mobile domain Pyruvate, phosphate dikinase 2 (EC 2.7.9.1) (Pyruvate, orthophosphate dikinase 2),Os03g0432100 protein Q75KR1,A0A0P0VZ25 PPDK2_ORYSJ,A0A0P0VZ25_ORYSJ PPDK2 CPDK2 Os03g0432100 LOC_Os03g31750 OsJ_010907 OSJNBa0036E17.10,Os03g0432100 OSNPB_030432100 FUNCTION: Formation of phosphoenolpyruvate. MISCELLANEOUS: This gene codes only for the short cytoplasmic isoform of PPDK. ENOG411EDJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SOUL heme-binding protein NA NA NA NA NA NA NA ENOG411EDJG BGLU28,BGLU29 Q4V3B3,Q8GXT2,A0A1P8AZ43 BGL28_ARATH,BGL29_ARATH,A0A1P8AZ43_ARATH Beta-glucosidase 28 (AtBGLU28) (EC 3.2.1.21),Beta-glucosidase 29 (AtBGLU29) (EC 3.2.1.21),Beta glucosidase 28 ARA:AT2G44460-MONOMER;,ARA:AT2G44470-MONOMER; R-ATH-189085; 3.2.1.21 67299,68244,50605 Beta-glucosidase 28 (AtBGLU28) (EC 3.2.1.21),Beta-glucosidase 29 (AtBGLU29) (EC 3.2.1.21),Beta glucosidase 28 membrane [GO:0016020]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657]; response to karrikin [GO:0080167],beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2050615;,locus:2050497; AT2G44460,AT2G44470 Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411EDJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Biopterin-dependent aromatic amino acid hydroxylase NA NA NA NA NA NA NA ENOG411E9WV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411EDJT UGT73B3,UGT73B1,UGT73B2,UGT73B5 Q8W491,Q8VZE9,Q94C57,Q9ZQG4,F4JKK6 U73B3_ARATH,U73B1_ARATH,U73B2_ARATH,U73B5_ARATH,F4JKK6_ARATH UDP-glycosyltransferase 73B3 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT73B3) (EC 2.4.1.91),UDP-glycosyltransferase 73B1 (EC 2.4.1.-),UDP-glucosyl transferase 73B2 (EC 2.4.1.-) (Flavonol 7-O-glucosyltransferase) (UDP glucose:flavonoid 7-O-glucosyltransferase),UDP-glycosyltransferase 73B5 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT73B5) (EC 2.4.1.91),UDP-glucosyltransferase 73B2 DISRUPTION PHENOTYPE: Decreased resistance to avirulent strains of P.syringae. {ECO:0000269|PubMed:16306146}. FUNCTION: Possesses quercetin 3-O-glucosyltransferase activity in vitro. Also active in vitro on benzoates and benzoate derivatives. Involved in stress or defense responses. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:16306146}.,FUNCTION: Possesses low quercetin 3-O-glucosyltransferase and 7-O-glucosyltransferase activities in vitro. {ECO:0000269|PubMed:15352060}.,FUNCTION: Catalyzes the glycosylation of flavonoids from UDP-glucose. Uses a wide range of flavonoid substrates including flavonols (quercetin, kaempferol, isorhamnetin, 3-OH 7,2',4'-MeO-flavone), flavones (luteolin, apigenin), flavanones (naringenin, hesperetin), flavanonols (taxifolin), isoflavones (genistein, daidzein), flavonol glycosides (quercitrin, isoquercitrin, rutin), and chalcones (isoliquiritigenin). Specific for the C-7 position, with a 20-fold lower activity for the C-3 position. {ECO:0000269|PubMed:14697269, ECO:0000269|PubMed:15352060}.,FUNCTION: Possesses quercetin 3-O-glucosyltransferase activity in vitro. Involved in stress or defense responses. {ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:16306146}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT4G34138-MONOMER;,ARA:GQT-2822-MONOMER; 2.4.1.170;2.4.1.81; 2.4.1.-; 2.4.1.91,2.4.1.- 54591,54836,54215,54184,37860 UDP-glycosyltransferase 73B3 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT73B3) (EC 2.4.1.91),UDP-glycosyltransferase 73B1 (EC 2.4.1.-),UDP-glucosyl transferase 73B2 (EC 2.4.1.-) (Flavonol 7-O-glucosyltransferase) (UDP glucose:flavonoid 7-O-glucosyltransferase),UDP-glycosyltransferase 73B5 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT73B5) (EC 2.4.1.91),UDP-glucosyltransferase 73B2 intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; defense response [GO:0006952]; metabolic process [GO:0008152]; response to other organism [GO:0051707],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; flavonol biosynthetic process [GO:0051555]; response to other organism [GO:0051707],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:16306146}.,TISSUE SPECIFICITY: Expressed in roots and senescent leaves. {ECO:0000269|PubMed:16306146}. locus:2831352;,locus:505006556;,locus:505006555;,locus:2053618; AT4G34131,AT4G34138,AT4G34135,AT2G15480 UDP-glucosyl transferase 73B1 NA NA NA NA NA NA NA ENOG411EDJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aquaporin NA NA NA NA NA NA NA ENOG411EDJP S-ACP-DES3 Q9LF05,A0A1P8BGU7 STAD3_ARATH,A0A1P8BGU7_ARATH Stearoyl-[acyl-carrier-protein] 9-desaturase 3, chloroplastic (Stearoyl-ACP desaturase 3) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 3),Plant stearoyl-acyl-carrier-protein desaturase family protein DISRUPTION PHENOTYPE: Reduced omega-7 fatty acids accumulation in the endosperm. The endosperm oil of double mutant aad2-3 aad3-3 lacks omega-7 fatty acids. {ECO:0000269|PubMed:27681170}. FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. Also able to convert palmitoyl-ACP to palmitoleoyl-ACP at the C9 position. Exhibits delta-9 palmitoyl-[acyl-carrier-protein] desaturase (PAD) activity. Involved in omega-7 monounsaturated fatty acid biosynthesis, especially in the endosperm oil (PubMed:27681170). {ECO:0000269|PubMed:17072561, ECO:0000269|PubMed:27681170}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT5G16230-MONOMER; 1.14.19.2; 1.14.19.2 45860,37276 Stearoyl-[acyl-carrier-protein] 9-desaturase 3, chloroplastic (Stearoyl-ACP desaturase 3) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 3),Plant stearoyl-acyl-carrier-protein desaturase family protein chloroplast [GO:0009507]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-[acp] desaturase activity [GO:0102786]; endosperm development [GO:0009960]; fatty acid homeostasis [GO:0055089]; regulation of endosperm development [GO:2000014]; unsaturated fatty acid biosynthetic process [GO:0006636],acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; fatty acid metabolic process [GO:0006631] DEVELOPMENTAL STAGE: Accumulates in maturing endosperm. {ECO:0000269|PubMed:27681170}. TISSUE SPECIFICITY: Ubiquitously expressed with a preference in leaves, flowers and stems. {ECO:0000269|PubMed:17072561}. locus:2181427; AT5G16230 Fatty acid desaturase NA NA NA NA NA NA NA ENOG411EDJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EDJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411E9WD PAP14 Q84LR6 PPA14_ARATH Probable inactive purple acid phosphatase 14 45576 Probable inactive purple acid phosphatase 14 extracellular region [GO:0005576]; plasmodesma [GO:0009506]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:16244908}. locus:2041379; AT2G46880 atpap14 pap14 NA NA NA NA NA NA NA ENOG411E3SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411E3SD Q8L8Q8 Y5486_ARATH Uncharacterized protein At5g64816 14442 Uncharacterized protein At5g64816 locus:505006714; AT5G64816 NA Expressed protein (Os03g0185600 protein) Q10QS1 Q10QS1_ORYSJ Os03g0185600 LOC_Os03g08710 Os03g0185600 OsJ_09693 OSNPB_030185600 ENOG411E3SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Leo1 Paf1 RNA polymerase II complex component homolog (S. cerevisiae) Os06g0255300 protein (Fragment) A0A0P0WUR7,A0A0P0WUR0 A0A0P0WUR7_ORYSJ,A0A0P0WUR0_ORYSJ Os06g0255300 OSNPB_060255300 ENOG411E3SA Q0WTL2 Q0WTL2_ARATH Regulatory protein RecX family protein (Uncharacterized protein At3g13226) 43777 Regulatory protein RecX family protein (Uncharacterized protein At3g13226) regulation of DNA repair [GO:0006282] locus:505006340; AT3G13226 regulatory protein Os04g0667900 protein,Os04g0667900 protein (Fragment) Q0J981,A0A0N7KJW2 Q0J981_ORYSJ,A0A0N7KJW2_ORYSJ Os04g0667900 Os04g0667900 OSNPB_040667900,Os04g0667900 OSNPB_040667900 ENOG411E3SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 OSJNBb0051N19.5 protein (Os04g0177100 protein) Q7XSF8 Q7XSF8_ORYSJ Os04g0177100 OSJNBb0051N19.5 OSNPB_040177100 ENOG411E3SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os05g0137700 protein A0A0N7KK42 A0A0N7KK42_ORYSJ Os05g0137700 OSNPB_050137700 ENOG411E3SM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 Os06g0128800 protein (Fragment) A0A0P0WSF6 A0A0P0WSF6_ORYSJ Os06g0128800 OSNPB_060128800 ENOG411E3SN RPL35AC,RPL35AA Q9C912,Q9LMK0 R35A3_ARATH,R35A1_ARATH 60S ribosomal protein L35a-3,60S ribosomal protein L35a-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 12916,12848 60S ribosomal protein L35a-3,60S ribosomal protein L35a-1 cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal large subunit biogenesis [GO:0042273],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal large subunit biogenesis [GO:0042273] locus:2019627;,locus:2007422; AT1G74270,AT1G07070 60S ribosomal protein Os02g0785800 protein (Putative ribosomal protein L35A) (cDNA clone:001-122-D08, full insert sequence) (cDNA clone:J033092B03, full insert sequence) Q6K8U8 Q6K8U8_ORYSJ Os02g0785800 Os02g0785800 OJ1316_E06.5 OJ1715_H01.42 OsJ_08647 OSNPB_020785800 ENOG411E3SI RPS17C,RPS17A,RPS17D,RPS17B Q9SQZ1,P49205,Q9LZ17,Q9SJ36 RS173_ARATH,RS171_ARATH,RS174_ARATH,RS172_ARATH 40S ribosomal protein S17-3,40S ribosomal protein S17-1,40S ribosomal protein S17-4,40S ribosomal protein S17-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 16036,16047,16019,15952 40S ribosomal protein S17-3,40S ribosomal protein S17-1,40S ribosomal protein S17-4,40S ribosomal protein S17-2 cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:2075735;,locus:2058324;,locus:2175428;,locus:2051229; AT3G10610,AT2G04390,AT5G04800,AT2G05220 40s ribosomal protein 40S ribosomal protein S17, putative, expressed (Os03g0109500 protein) (Putative 40S ribosomal protein S17),40S ribosomal protein S17-4, putative, expressed (Os10g0411800 protein) Q8H7V0,Q7XEQ3 Q8H7V0_ORYSJ,Q7XEQ3_ORYSJ OSJNBb0043C10.11 LOC_Os03g01900 Os03g0109500 OsJ_09121 OSNPB_030109500,LOC_Os10g27190 Os10g0411800 OSNPB_100411800 ENOG411E3SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family Os11g0703000 protein (Osmotin protein homolog-rice, putative) (Thaumatin family protein, expressed) (cDNA clone:002-135-H05, full insert sequence) Q53NM4 Q53NM4_ORYSJ LOC_Os11g47670 Os11g0703000 OSNPB_110703000 ENOG411E3SK PSB27-2,LPA19 Q9ZVZ9,A0A1P8ASY3 PB27B_ARATH,A0A1P8ASY3_ARATH Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic (Psb27-H2) (LOW PSII accumulation 19 protein) (LPA19) (Thylakoid lumenal protein PSB27-H2),Photosystem II 11 kDa protein-like protein DISRUPTION PHENOTYPE: A high chlorophyll fluorescence mutant. Impaired PSII function, maximum photochemical efficiency of PSII was decreased, about 25% PSII in thylakoids; severely reduced growth, decreased chlorophyll content. Inefficient processing of the D1 precursor to the mature form. {ECO:0000269|PubMed:20444695}. Dwarf; Pale green leaves-L. Zhang-2010 FUNCTION: Required, but not essential, for D1 (psbA) precursor processing and thus correct photosystem II assembly (PSII). {ECO:0000269|PubMed:20444695}. 22267,16203 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic (Psb27-H2) (LOW PSII accumulation 19 protein) (LPA19) (Thylakoid lumenal protein PSB27-H2),Photosystem II 11 kDa protein-like protein chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; photosystem II assembly [GO:0010207],photosystem II assembly [GO:0010207] locus:505006101; AT1G05385 NA Expressed protein (Os03g0747700 protein) (cDNA clone:001-002-H05, full insert sequence) Q10CX9 Q10CX9_ORYSJ Os03g0747700 LOC_Os03g53640 Os03g0747700 OSNPB_030747700 ENOG411E3SJ Q9SVB9,F4JVE0 Q9SVB9_ARATH,F4JVE0_ARATH TSL-kinase interacting-like protein (Uncharacterized protein AT4g39380),TSL-kinase interacting-like protein 56770,58895 TSL-kinase interacting-like protein (Uncharacterized protein AT4g39380),TSL-kinase interacting-like protein kinase activity [GO:0016301],nucleus [GO:0005634]; chromatin binding [GO:0003682]; kinase activity [GO:0016301] locus:2122457; AT4G39380 Inherit from NOG: tsl-kinase interacting protein NA NA NA NA NA NA NA ENOG411E3SU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os01g0725900 protein (Fragment) A0A0P0V7P5 A0A0P0V7P5_ORYSJ Os01g0725900 OSNPB_010725900 ENOG411E3ST TTN9 Q9LJZ4,A0A1I9LSI5 Q9LJZ4_ARATH,A0A1I9LSI5_ARATH Titan9 (Uncharacterized protein At3g20070),Titan9 Embryo defective; Preglobular; Enlarged endosperm nuclei-D. Meinke-2002 32466,27111 Titan9 (Uncharacterized protein At3g20070),Titan9 embryo development ending in seed dormancy [GO:0009793]; endosperm development [GO:0009960] locus:2087630; AT3G20070 NA Os01g0138600 protein (cDNA clone:J023144O06, full insert sequence),Os06g0245600 protein (Fragment) Q0JQU2,A0A0P0WV62 Q0JQU2_ORYSJ,A0A0P0WV62_ORYSJ Os01g0138600 Os01g0138600 OSNPB_010138600,Os06g0245600 OSNPB_060245600 ENOG411E3SQ Q9FLT3 GL34_ARATH Germin-like protein subfamily 3 member 4 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 22890 Germin-like protein subfamily 3 member 4 apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2159193; AT5G61750 germin-like protein Germin-like protein 11-1 Q2R352 GL111_ORYSJ Os11g0537350 LOC_Os11g33110 OsJ_032823 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E3SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone h2a NA NA NA NA NA NA NA ENOG411E3SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os06g0347300 protein A0A0P0WWB8 A0A0P0WWB8_ORYSJ Os06g0347300 OSNPB_060347300 ENOG411E3SX T1B9.22 Q9SFU2 Q9SFU2_ARATH At3g07120 (Putative RING zinc finger protein) (RING/U-box superfamily protein) 39452 At3g07120 (Putative RING zinc finger protein) (RING/U-box superfamily protein) locus:2098515; AT3G07120 RING NA NA NA NA NA NA NA ENOG411E3S4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potassium channel NA NA NA NA NA NA NA ENOG411E3S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase Os01g0136501 protein A0A0P0UYK4 A0A0P0UYK4_ORYSJ Os01g0136501 OSNPB_010136501 ENOG411E3S1 TET14,TET15 Q58G33,Q1PDI1 TET14_ARATH,TET15_ARATH Tetraspanin-14,Tetraspanin-15 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 30549,35880 Tetraspanin-14,Tetraspanin-15 integral component of membrane [GO:0016021] locus:2041155;,locus:2174383; AT2G01960,AT5G57810 Tetraspanin family NA NA NA NA NA NA NA ENOG411E3S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411E3S3 HIPP04 Q9SHQ8 HIP4_ARATH Heavy metal-associated isoprenylated plant protein 4 (AtHIP04) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 33411 Heavy metal-associated isoprenylated plant protein 4 (AtHIP04) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2018768; AT1G29000 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E3S2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling NA NA NA NA NA NA NA ENOG411E3S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dual specificity phosphatase catalytic domain NA NA NA NA NA NA NA ENOG411DPYU MBK5.18 A0A1P8BGI4,F4KAT5 A0A1P8BGI4_ARATH,F4KAT5_ARATH Zinc ion binding / DNA binding protein 60282,69485 Zinc ion binding / DNA binding protein DNA binding [GO:0003677]; metal ion binding [GO:0046872],DNA binding [GO:0003677] locus:2160629; AT5G63700 zinc finger Os01g0884500 protein (Zinc finger (CCCH-type) protein-like) Q5N7H4 Q5N7H4_ORYSJ Os01g0884500 Os01g0884500 B1065E10.54 OSNPB_010884500 ENOG411DPYS Q93WC5,Q9FZ24 PP300_ARATH,PPR4_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial,Pentatricopeptide repeat-containing protein At1g02370, mitochondrial 56942,60353 Pentatricopeptide repeat-containing protein At4g01990, mitochondrial,Pentatricopeptide repeat-containing protein At1g02370, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2141360;,locus:2204808; AT4G01990,AT1G02370 Pentatricopeptide repeat-containing protein Os01g0301500 protein (Putative DNA-binding protein),Os01g0301000 protein (Putative DNA-binding protein) (cDNA clone:J013054P19, full insert sequence) (cDNA clone:J033005A18, full insert sequence) Q5JL28,Q5JL31 Q5JL28_ORYSJ,Q5JL31_ORYSJ Os01g0301500 Os01g0301500 OsJ_01440 OSNPB_010301500 P0682B08.26,Os01g0301000 Os01g0301000 OSNPB_010301000 P0682B08.21 ENOG411DPYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RECEPTOR-like protein Os10g0155800 protein (Fragment),Os01g0515300 protein,Os10g0155700 protein Q0IYV8,A0A0P0V387,A0A0P0XS56 Q0IYV8_ORYSJ,A0A0P0V387_ORYSJ,A0A0P0XS56_ORYSJ Os10g0155800 OSNPB_100155800,Os01g0515300 OSNPB_010515300,Os10g0155700 OSNPB_100155700 ENOG411DPYC BAT1 Q9ZU50,Q5FV40 BAT1_ARATH,Q5FV40_ARATH Amino-acid permease BAT1 (Bidirectional amino acid transporter 1) (GABA permease) (AtGABP),At2g01170 (Bidirectional amino acid transporter 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants grown on medium without sucrose show strong decrease in root growth and plants grown on soil under low light intensity have reduced rosette leaf expansion. {ECO:0000269|PubMed:21501262}. FUNCTION: May play a role in primary carbon metabolism and plant growth, by mediating the transport of GABA from the cytosol to mitochondria. When expressed in a heterologous system (yeast), imports Arg and Ala across the plasma membrane and exports Lys and Glu, but does not transport proline. {ECO:0000269|PubMed:19199104, ECO:0000269|PubMed:21501262}. 55332,46757 Amino-acid permease BAT1 (Bidirectional amino acid transporter 1) (GABA permease) (AtGABP),At2g01170 (Bidirectional amino acid transporter 1) integral component of plasma membrane [GO:0005887]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; antiporter activity [GO:0015297]; arginine transmembrane transporter activity [GO:0015181]; gamma-aminobutyric acid transmembrane transporter activity [GO:0015185]; L-alanine transmembrane transporter activity [GO:0015180]; L-glutamate transmembrane transporter activity [GO:0005313]; L-lysine transmembrane transporter activity [GO:0015189]; gamma-aminobutyric acid transport [GO:0015812],integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:19199104}. locus:2038811; AT2G01170 amino acid Amino-acid permease BAT1 homolog,Os01g0607200 protein B9EXZ6,A0A0N7KDA6 BAT1_ORYSJ,A0A0N7KDA6_ORYSJ BAT1 Os01g0607200 LOC_Os01g42234 OsJ_02547,Os01g0607200 OSNPB_010607200 FUNCTION: May be involved in the transport of amino acids. {ECO:0000250}. ENOG411DPYN CXE1 Q9LMA7 CXE1_ARATH Probable carboxylesterase 1 (AtCXE1) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT1G19190-MONOMER; 3.1.1.1 36081 Probable carboxylesterase 1 (AtCXE1) (EC 3.1.1.1) cytosol [GO:0005829]; carboxylic ester hydrolase activity [GO:0052689]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in roots, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2202190; AT1G19190 Carboxylesterase NA NA NA NA NA NA NA ENOG411DPYK O22813 O22813_ARATH At2g33630/F4P9.40 (NAD(P)-binding Rossmann-fold superfamily protein) (Putative steroid dehydrogenase) ARA:AT2G33630-MONOMER; 53435 At2g33630/F4P9.40 (NAD(P)-binding Rossmann-fold superfamily protein) (Putative steroid dehydrogenase) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; 3-beta-hydroxy-delta5-steroid dehydrogenase activity [GO:0003854]; steroid biosynthetic process [GO:0006694] locus:2051063; AT2G33630 short-chain dehydrogenase reductase family 42E member Os02g0715200 protein (Putative NAD(P)-dependent cholesterol dehydrogenase) (cDNA clone:J023066G02, full insert sequence),Os02g0715200 protein (Fragment) Q6ZHP8,A0A0P0VNV4 Q6ZHP8_ORYSJ,A0A0P0VNV4_ORYSJ Os02g0715200 Os02g0715200 OJ1191_G08.12 OSNPB_020715200,Os02g0715200 OSNPB_020715200 ENOG411EC84 NAC102 Q8H115,A0A1P8BAQ3 NA102_ARATH,A0A1P8BAQ3_ARATH NAC domain-containing protein 102 (ANAC102),NAC domain containing protein 102 DISRUPTION PHENOTYPE: No visible changes in phenotype. {ECO:0000269|PubMed:19176720}. FUNCTION: May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. 35999,37166 NAC domain-containing protein 102 (ANAC102),NAC domain containing protein 102 chloroplast [GO:0009507]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; glucosinolate metabolic process [GO:0019760]; response to hypoxia [GO:0001666]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in root cortex, root caps and sepals. Not detected in imbibed seeds. {ECO:0000269|PubMed:19176720}. locus:2160634; AT5G63790 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EC85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EC86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain Os07g0507500 protein (Serine/threonine phosphatase PP7-related-like protein) (cDNA clone:J023114F23, full insert sequence) Q8H3F8 Q8H3F8_ORYSJ Os07g0507500 Os07g0507500 OSJNBb0062D12.132 OSNPB_070507500 ENOG411EC80 HMGB11 Q9LG02 HMG11_ARATH Putative high mobility group B protein 11 (Nucleosome/chromatin assembly factor group D 11) FUNCTION: Binds preferentially DNA with A/T-rich content. {ECO:0000250}. 38049 Putative high mobility group B protein 11 (Nucleosome/chromatin assembly factor group D 11) chloroplast [GO:0009507]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2020517; AT1G55650 BRIGHT NA NA NA NA NA NA NA ENOG411EC81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411EC82 MFC19.19 Q9FHI4 Q9FHI4_ARATH Leucine-rich repeat (LRR) family protein 132582 Leucine-rich repeat (LRR) family protein chloroplast [GO:0009507]; plasma membrane [GO:0005886]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2163593; AT5G45520 NA NA NA NA NA NA NA NA ENOG411EC83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: oxidoreductase NA NA NA NA NA NA NA ENOG411EC8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411E62H GATA11,GATA10 Q6DBP8,Q8VZP4 GAT11_ARATH,GAT10_ARATH GATA transcription factor 11,GATA transcription factor 10 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. 33839,34290 GATA transcription factor 11,GATA transcription factor 10 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2205100;,locus:2205090; AT1G08010,AT1G08000 gata transcription factor NA NA NA NA NA NA NA ENOG411EC8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411EC8P MQJ16.10,F13I12.300,MQJ16.9,T18B22.110 Q9FK83,Q5XVB2,Q9SD48,Q9FK84,Q9M1N3,A0A1I9LT05,F4K9X4 Q9FK83_ARATH,Q5XVB2_ARATH,Q9SD48_ARATH,Q9FK84_ARATH,Q9M1N3_ARATH,A0A1I9LT05_ARATH,F4K9X4_ARATH Emb|CAB72473.1 (Transmembrane protein, putative (DUF247)),Transmembrane protein,Transmembrane protein, putative (DUF247) (Uncharacterized protein At3g47250) (Uncharacterized protein F13I12.300),At3g44710 (Transmembrane protein, putative (DUF247)) (Uncharacterized protein At3g44710) (Uncharacterized protein T18B22.110),Transmembrane protein, putative (DUF247) 59532,24879,54806,56251,57736,24756,50596 Emb|CAB72473.1 (Transmembrane protein, putative (DUF247)),Transmembrane protein,Transmembrane protein, putative (DUF247) (Uncharacterized protein At3g47250) (Uncharacterized protein F13I12.300),At3g44710 (Transmembrane protein, putative (DUF247)) (Uncharacterized protein At3g44710) (Uncharacterized protein T18B22.110),Transmembrane protein, putative (DUF247) integral component of membrane [GO:0016021] locus:2171147;,locus:2075611;,locus:2171132;,locus:2098140; AT5G22560,AT3G44700,AT3G47250,AT5G22550,AT3G44710 Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EC8Q BHLH36,MIO24.9 Q9FLI1,A0A1P8BCN7 BH036_ARATH,A0A1P8BCN7_ARATH Transcription factor bHLH36 (Basic helix-loop-helix protein 36) (AtbHLH36) (bHLH 36) (Transcription factor EN 6) (bHLH transcription factor bHLH036),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 19929,22684 Transcription factor bHLH36 (Basic helix-loop-helix protein 36) (AtbHLH36) (bHLH 36) (Transcription factor EN 6) (bHLH transcription factor bHLH036),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2165311; AT5G51780 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411DQU8 F4JQG6,F4IQK5,A0A1P8B270 VCL43_ARATH,VCL21_ARATH,A0A1P8B270_ARATH Vicilin-like seed storage protein At4g36700 (Globulin At4g36700),Vicilin-like seed storage protein At2g18540 (Globulin At2g18540),RmlC-like cupins superfamily protein FUNCTION: Seed storage protein. {ECO:0000305}. 59085,84769,85258 Vicilin-like seed storage protein At4g36700 (Globulin At4g36700),Vicilin-like seed storage protein At2g18540 (Globulin At2g18540),RmlC-like cupins superfamily protein nutrient reservoir activity [GO:0045735] locus:2115390;,locus:2046273; AT4G36700,AT2G18540 Cupin family Os03g0197300 protein (Fragment) A0A0P0VUB4 A0A0P0VUB4_ORYSJ Os03g0197300 OSNPB_030197300 ENOG411DQU9 MUP24.17 Q8VZ58 Q8VZ58_ARATH CAAX amino terminal protease family protein (Uncharacterized protein At5g60750) 39000 CAAX amino terminal protease family protein (Uncharacterized protein At5g60750) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; peptidase activity [GO:0008233]; photosynthetic acclimation [GO:0009643] locus:2175836; AT5G60750 CAAX amino terminal protease family protein Metal-dependent membrane protease-like (Os06g0505400 protein) Q654D3 Q654D3_ORYSJ Os06g0505400 OsJ_21482 OSJNBb0026G06.4 OSNPB_060505400 ENOG411DQU6 AXR4 Q9FZ33 AXR4_ARATH Protein AUXIN RESPONSE 4 DISRUPTION PHENOTYPE: Plants show reduced gravitropism, auxin-resistant root growth and AUX1 accumulation in the endoplasmic reticulum. {ECO:0000269|PubMed:16690816}. auxin resistant; irregular rosette leaves slightly curled around leaf axis; roots elongate on auxin-containing medium; defective root gravitropism; reduced number of lateral roots,auxin resistant; irregular rosette leaves slightly curled around leaf axis; roots very auxin resistant; defective root gravitropism; reduced number of lateral roots; plant appearance similar to axr1-12 but more pronounced; dwarf bushy plants; reduced plant height; reduced fertility.,auxin resistant; narrow irregular rosette leaves slightly curled around leaf axis; roots elongate on auxin-containing medium; defective root gravitropism; reduced number of lateral roots - greater reduction than for either single mutant; dwarf bushy plants; reduced plant height; ethylene resistant; reduced fertility.,Phenotype not described. Defective root gravitropism; Insensitive to auxin-M. Estelle-1995 FUNCTION: Required for the auxin influx facilitator AUX1 polar trafficking and its asymmetric localization within the plasma membrane. Not involved in the PIN proteins localization. {ECO:0000269|PubMed:16690816}. 52419 Protein AUXIN RESPONSE 4 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; auxin polar transport [GO:0009926]; response to auxin [GO:0009733]; response to mechanical stimulus [GO:0009612] TISSUE SPECIFICITY: Most abundant in root tissue, lesser amounts in rosette leaves, stems and flowers and very little in mature siliques. {ECO:0000269|PubMed:16690816}. locus:2011000; AT1G54990 Protein AUXIN RESPONSE Expressed protein (Os11g0544100 protein) Q2R2Z8 Q2R2Z8_ORYSJ LOC_Os11g34140 Os11g0544100 OSNPB_110544100 ENOG411DQU7 F4I8B9,Q9M8T5,Q9LFE4,F4JJP1,A0A1P8B4L4,F4IZP3 Y1501_ARATH,Y3293_ARATH,Y5673_ARATH,Y4759_ARATH,A0A1P8B4L4_ARATH,F4IZP3_ARATH Putative WEB family protein At1g65010, chloroplastic,WEB family protein At3g02930, chloroplastic,WEB family protein At5g16730, chloroplastic,WEB family protein At4g27595, chloroplastic,WEB family protein (DUF827),Weak chloroplast movement under blue light protein (DUF827) 152702,91859,96208,138952,136477,91618 Putative WEB family protein At1g65010, chloroplastic,WEB family protein At3g02930, chloroplastic,WEB family protein At5g16730, chloroplastic,WEB family protein At4g27595, chloroplastic,WEB family protein (DUF827),Weak chloroplast movement under blue light protein (DUF827) chloroplast [GO:0009507]; microtubule associated complex [GO:0005875]; synaptonemal complex [GO:0000795]; reciprocal meiotic recombination [GO:0007131],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; microtubule associated complex [GO:0005875]; synaptonemal complex [GO:0000795]; reciprocal meiotic recombination [GO:0007131] locus:2010826;,locus:2075402;,locus:2149035;,locus:504955294; AT1G65010,AT3G02930,AT5G16730,AT4G27595 protein transport protein-related Os05g0119700 protein (Fragment),Cingulin-like (Os02g0439200 protein),OSJNBa0009P12.17 protein (Os04g0592400 protein),Os04g0592400 protein (Fragment) Q0DL73,Q6Z7G3,Q0JAK9,A0A0P0WE64 Q0DL73_ORYSJ,Q6Z7G3_ORYSJ,Q0JAK9_ORYSJ,A0A0P0WE64_ORYSJ Os05g0119700 Os05g0119700 OSNPB_050119700,Os02g0439200 Os02g0439200 OJ1570_H12.23 OsJ_06552 OSNPB_020439200,Os04g0592400 Os04g0592400 OsJ_15983 OSJNBa0009P12.17 OSNPB_040592400,Os04g0592400 OSNPB_040592400 ENOG411DQU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox protein knotted-1-like NA NA NA NA NA NA NA ENOG411DQU5 Q9C794,Q9LQY7 Q9C794_ARATH,Q9LQY7_ARATH Son of sevenless protein (Uncharacterized protein F10D13_10),Son of sevenless protein (T24P13.3) 38289,37017 Son of sevenless protein (Uncharacterized protein F10D13_10),Son of sevenless protein (T24P13.3) integral component of membrane [GO:0016021] locus:2007096;,locus:2200590; AT1G69430,AT1G26650 NA Os07g0595900 protein (Fragment) A0A0P0X8B6 A0A0P0X8B6_ORYSJ Os07g0595900 OSNPB_070595900 ENOG411DQU2 RHM3,RHM1,RHM2 Q9LH76,Q9SYM5,Q9LPG6,A0A1I9LN83 RHM3_ARATH,RHM1_ARATH,RHM2_ARATH,A0A1I9LN83_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 (Probable rhamnose biosynthetic enzyme 3) (AtRHM3) [Includes: UDP-glucose 4,6-dehydratase (EC 4.2.1.76); UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase (EC 1.1.1.-) (EC 5.1.3.-)],Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (Protein REPRESSOR OF LRX1 1) (Rhamnose biosynthetic enzyme 1) (AtRHM1) [Includes: UDP-glucose 4,6-dehydratase (EC 4.2.1.76); UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase (EC 1.1.1.-) (EC 5.1.3.-)],Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 (NDP-rhamnose synthase) (Protein MUCILAGE-MODIFIED 4) (Protein RHAMNOSE BIOSYNTHESIS 2) (Rhamnose biosynthetic enzyme 2) (AtRHM2) (UDP-L-rhamnose synthase MUM4) [Includes: UDP-glucose 4,6-dehydratase (EC 4.2.1.76); UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase (EC 1.1.1.-) (EC 5.1.3.-)],Rhamnose biosynthesis 3 DISRUPTION PHENOTYPE: Hyponastic growth, aberrant pavement cell and stomatal morphology in cotyledons, and defective trichome formation. {ECO:0000269|PubMed:18567791}. A detailed analysis of the rol1-2 mutants show aberrant cotyledon development with an uneven surface and hyponastic growth aberrant pavement cell and stomatal morphology in cotyledons and defective trichome formation. Further the typical jigsaw puzzle–like cell shape of pavement cells was absent in rol1-2 mutants.,No significant differences in the amounts of the major sugars of cell wall material including Rha were identified between the WT and rol1-2. However rol1-2 and lrx1 rol1-2 showed an approx 30% reduction in the RG II-specific monosaccharides 2-O-methyl-D-xylose and 2-O-methyl-L-fucose. These methylated sugars are diagnostic components of the two large Rha-containing side chains of RG II and their reduced abundance may reflect a defect in the synthesis of RG II. Abnormal cotyledon growth; Slightly shorter roots and root hairs; Deformed trichomes-M. Klein-2008,Abnormal seed mucilage-T. Western-2009 FUNCTION: Trifunctional enzyme involved in UDP-beta-L-rhamnose biosynthesis, a precursor of the primary cell wall components rhamnogalacturonan I (RG-I) and rhamnogalacturonan II (RG-II) (PubMed:17190829). Catalyzes the dehydration of UDP-glucose to form UDP-4-dehydro-6-deoxy-D-glucose followed by the epimerization of the C3' and C5' positions of UDP-4-dehydro-6-deoxy-D-glucose to form UDP-4-keto-beta-L-rhamnose and the reduction of UDP-4-keto-beta-L-rhamnose to yield UDP-beta-L-rhamnose (By similarity). {ECO:0000250|UniProtKB:Q9LPG6, ECO:0000269|PubMed:14671019, ECO:0000269|PubMed:17190829}.,FUNCTION: Trifunctional enzyme involved in UDP-beta-L-rhamnose biosynthesis, a precursor of the primary cell wall components rhamnogalacturonan I (RG-I) and rhamnogalacturonan II (RG-II) (PubMed:14671019, PubMed:17190829, PubMed:19056285). Plays a major role in supplying UDP-rhamnose for flavonol biosynthesis (PubMed:18757557). Catalyzes the dehydration of UDP-glucose to form UDP-4-dehydro-6-deoxy-D-glucose followed by the epimerization of the C3' and C5' positions of UDP-4-dehydro-6-deoxy-D-glucose to form UDP-4-keto-beta-L-rhamnose and the reduction of UDP-4-keto-beta-L-rhamnose to yield UDP-beta-L-rhamnose (By similarity). {ECO:0000250|UniProtKB:Q9LPG6, ECO:0000269|PubMed:14671019, ECO:0000269|PubMed:17190829, ECO:0000269|PubMed:18757557, ECO:0000269|PubMed:19056285}.,FUNCTION: Trifunctional enzyme involved in UDP-beta-L-rhamnose biosynthesis, a precursor of the primary cell wall components rhamnogalacturonan I (RG-I) and rhamnogalacturonan II (RG-II). Catalyzes the dehydration of UDP-glucose to form UDP-4-dehydro-6-deoxy-D-glucose followed by the epimerization of the C3' and C5' positions of UDP-4-dehydro-6-deoxy-D-glucose to form UDP-4-keto-beta-L-rhamnose and the reduction of UDP-4-keto-beta-L-rhamnose to yield UDP-beta-L-rhamnose (PubMed:17190829). Required for the normal seed coat epidermal development (PubMed:14671019). {ECO:0000269|PubMed:14671019, ECO:0000269|PubMed:17190829}. MISCELLANEOUS: In bacteria, TDP-L-rhamnose is formed by the successive action of three different enzymes on TDP-D-glucose. In plants, on the other hand, a single polypeptide probably catalyzes all three reactions that lead to the conversion of UDP-D-glucose to UDP-L-rhamnose.,MISCELLANEOUS: The increased accumulation of auxin in rol1-2 seedlings appears to be caused by a flavonol-induced modification of auxin transport (PubMed:18567791, PubMed:21502189). In bacteria, TDP-L-rhamnose is formed by the successive action of three different enzymes on TDP-D-glucose. In plants, on the other hand, a single polypeptide probably catalyzes all three reactions that lead to the conversion of UDP-D-glucose to UDP-L-rhamnose. {ECO:0000269|PubMed:18567791, ECO:0000269|PubMed:21502189}.,MISCELLANEOUS: In bacteria, TDP-L-rhamnose is formed by the successive action of three different enzymes on TDP-D-glucose. In plants, on the other hand, a single polypeptide probably catalyzes all three reactions that lead to the conversion of UDP-D-glucose to UDP-L-rhamnose.; MISCELLANEOUS: RHM2 appears to be more highly expressed in cv. Landsberg erecta than in cv. Col-2. Transcriptions factors AP2, TTG1, and GL2 are required for maximum levels of RHM2 expression at the time of mucilage production. PATHWAY: Carbohydrate biosynthesis. {ECO:0000305}. ARA:AT3G14790-MONOMER;,ARA:AT1G78570-MONOMER;MetaCyc:AT1G78570-MONOMER;,MetaCyc:AT1G53500-MONOMER; 4.2.1.76; 1.1.1.-; 5.1.3.- 74914,75372,75226,75287 Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 (Probable rhamnose biosynthetic enzyme 3) (AtRHM3) [Includes: UDP-glucose 4,6-dehydratase (EC 4.2.1.76); UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase (EC 1.1.1.-) (EC 5.1.3.-)],Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (Protein REPRESSOR OF LRX1 1) (Rhamnose biosynthetic enzyme 1) (AtRHM1) [Includes: UDP-glucose 4,6-dehydratase (EC 4.2.1.76); UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase (EC 1.1.1.-) (EC 5.1.3.-)],Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 (NDP-rhamnose synthase) (Protein MUCILAGE-MODIFIED 4) (Protein RHAMNOSE BIOSYNTHESIS 2) (Rhamnose biosynthetic enzyme 2) (AtRHM2) (UDP-L-rhamnose synthase MUM4) [Includes: UDP-glucose 4,6-dehydratase (EC 4.2.1.76); UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase (EC 1.1.1.-) (EC 5.1.3.-)],Rhamnose biosynthesis 3 cytosol [GO:0005829]; plasmodesma [GO:0009506]; isomerase activity [GO:0016853]; oxidoreductase activity [GO:0016491]; UDP-glucose 4,6-dehydratase activity [GO:0050377]; UDP-L-rhamnose synthase activity [GO:0010280]; UDP-rhamnose biosynthetic process [GO:0010253],cytosol [GO:0005829]; plasmodesma [GO:0009506]; dTDP-glucose 4,6-dehydratase activity [GO:0008460]; isomerase activity [GO:0016853]; oxidoreductase activity [GO:0016491]; UDP-glucose 4,6-dehydratase activity [GO:0050377]; UDP-L-rhamnose synthase activity [GO:0010280]; auxin efflux [GO:0010315]; cell differentiation [GO:0030154]; cell wall organization [GO:0071555]; flavonol biosynthetic process [GO:0051555]; regulation of cell proliferation [GO:0042127]; UDP-rhamnose biosynthetic process [GO:0010253],cytosol [GO:0005829]; dTDP-glucose 4,6-dehydratase activity [GO:0008460]; UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity [GO:0010489]; UDP-4-keto-rhamnose-4-keto-reductase activity [GO:0010490]; UDP-glucose 4,6-dehydratase activity [GO:0050377]; UDP-L-rhamnose synthase activity [GO:0010280]; mucilage biosynthetic process [GO:0010192]; seed coat development [GO:0010214]; UDP-rhamnose biosynthetic process [GO:0010253] DEVELOPMENTAL STAGE: Up-regulated at the time of mucilage production during seed coat differentiation. {ECO:0000269|PubMed:14701918}. TISSUE SPECIFICITY: Expressed in roots, stems, seedlings, and siliques. Lower expression in inflorescence tips, and leaves. {ECO:0000269|PubMed:14671019, ECO:0000269|PubMed:14701918}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seedlings, inflorescence tips, and siliques. Detected in the adaxial side of cotyledons, in the emerging leaves and in trichomes. Also detected in the root tip, more precisely in the epidermal cells in the meristematic and elongation zone. {ECO:0000269|PubMed:14671019, ECO:0000269|PubMed:14701918, ECO:0000269|PubMed:16766693, ECO:0000269|PubMed:19056285, ECO:0000269|PubMed:21502189}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seedlings, inflorescence tips, and siliques. {ECO:0000269|PubMed:14671019}. locus:2099372;,locus:2202960;,locus:2024902; AT3G14790,AT1G78570,AT1G53500 Rhamnose biosynthetic enzyme Os03g0278200 protein (Rhamnose biosynthetic enzyme 1, putative, expressed),Os03g0278200 protein (Fragment),Os05g0203400 protein Q10N92,A0A0P0VWN1,A0A0P0WJ20 Q10N92_ORYSJ,A0A0P0VWN1_ORYSJ,A0A0P0WJ20_ORYSJ Os03g0278200 LOC_Os03g17000 Os03g0278200 OsJ_10344 OSNPB_030278200,Os03g0278200 OSNPB_030278200,Os05g0203400 OSNPB_050203400 ENOG411DQU3 LARP6B O80567 LRP6B_ARATH La-related protein 6B (AtLARP6b) (VirF-interacting protein FIP1) FUNCTION: Transcriptional regulator. {ECO:0000250}. 60589 La-related protein 6B (AtLARP6b) (VirF-interacting protein FIP1) intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; regulation of transcription, DNA-templated [GO:0006355]; RNA processing [GO:0006396]; transcription, DNA-templated [GO:0006351] locus:2051734; AT2G43970 La domain Os12g0225100 protein (Fragment),Os11g0248200 protein (Fragment) C7JA61,Q0ITJ6 C7JA61_ORYSJ,Q0ITJ6_ORYSJ Os12g0225100 Os12g0225100 OSNPB_120225100,Os11g0248200 OSNPB_110248200 ENOG411DQU0 CPK29 Q8RWL2,A0A1P8AP07 CDPKT_ARATH,A0A1P8AP07_ARATH Calcium-dependent protein kinase 29 (EC 2.7.11.1),Calcium-dependent protein kinase 29 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. 2.7.11.1 60493,57579 Calcium-dependent protein kinase 29 (EC 2.7.11.1),Calcium-dependent protein kinase 29 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672] locus:2204340; AT1G76040 calcium-dependent protein kinase Calcium-dependent protein kinase 12 (OsCDPK12) (OsCPK12) (EC 2.7.11.1) Q7XSQ5 CDPKC_ORYSJ CPK12 Os04g0560600 LOC_Os04g47300 OsJ_15768 OSJNBa0084K11.9 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Functions in signal transduction pathways that positively regulate responses to low-nitrogen (Ref.7). Functions in multiple signaling pathways, positively regulating salt tolerance and negatively modulating rice blast fungus resistance. May promote tolerance to salt stress by negatively regulating NADPH oxidase and positively regulating reactive oxygen species (ROS) scavengers (PubMed:21883553). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:21883553, ECO:0000269|Ref.7}. MISCELLANEOUS: Plants over-expressing CPK12 show enhanced tolerance to low nitrogen stress (Ref.7). Plants over-expressing CPK12 show increased tolerance to salt stress, increased sensitivity to abscisic acid (ABA) and increased susceptibility to rice blast fungus (M.oryzae) (PubMed:21883553). {ECO:0000269|PubMed:21883553, ECO:0000269|Ref.7}. ENOG411DQU1 Q9LM55 FBK8_ARATH F-box/kelch-repeat protein At1g22040 52534 F-box/kelch-repeat protein At1g22040 locus:2030601; AT1G22040 F-box kelch-repeat protein Kelch motif family protein, expressed (Os10g0363600 protein) (Putative kelch-containing protein) (cDNA clone:J013002P06, full insert sequence),Kelch repeat-containing F-box-like protein (Os02g0574900 protein) Q8S6N3,Q69S84 Q8S6N3_ORYSJ,Q69S84_ORYSJ Os10g0363600 LOC_Os10g21930 Os10g0363600 OsJ_31238 OSJNBa0073L01.3 OSNPB_100363600,Os02g0574900 Os02g0574900 OsJ_07234 OSNPB_020574900 P0703B01.15 ENOG411DQUZ Q8GZA6 PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210, mitochondrial 100431 Pentatricopeptide repeat-containing protein At1g71210, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2026316; AT1G71210 Pentatricopeptide repeat-containing protein Os02g0127600 protein A0A0P0VED0 A0A0P0VED0_ORYSJ Os02g0127600 OSNPB_020127600 ENOG411DQUX O64757 O64757_ARATH Disease resistance family protein / LRR family protein (Putative disease resistance protein) 100282 Disease resistance family protein / LRR family protein (Putative disease resistance protein) cell wall [GO:0005618]; defense response to fungus [GO:0050832] locus:2044767; AT2G34930 LRR receptor-like serine threonine-protein kinase HcrVf1 protein-like (Os01g0601675 protein),Os11g0567800 protein,Leucine Rich Repeat family protein, expressed (Os11g0558400 protein),Leucine Rich Repeat family protein, expressed (Os10g0527900 protein),Leucine Rich Repeat family protein, expressed (Os11g0558900 protein),Leucine Rich Repeat family protein (Os11g0559100 protein),Leucine Rich Repeat family protein, expressed (Os11g0565000 protein) (cDNA, clone: J065113J02, full insert sequence),HcrVf1 protein-like (Os01g0601625 protein),Os10g0469300 protein,Leucine Rich Repeat family protein (Os11g0568200 protein),Os11g0565920 protein,Os10g0469600 protein,Os10g0375400 protein,Os01g0601700 protein (Fragment),Os11g0559700 protein,Os11g0561100 protein (Fragment),Os11g0564900 protein,Os11g0569100 protein,Os10g0468875 protein Q8S1D2,C7J946,Q2R2L4,Q336Y6,Q2R2L0,Q2R2K6,Q2R2H0,Q5ZBC0,B9G667,Q2R2F1,A0A0P0Y3K7,A0A0P0XV52,A0A0P0XUB1,A0A0P0V4W2,A0A0P0Y3Q8,A0A0P0Y3J7,A0A0P0Y3E8,A0A0P0Y3G4,A0A0P0XV54 Q8S1D2_ORYSJ,C7J946_ORYSJ,Q2R2L4_ORYSJ,Q336Y6_ORYSJ,Q2R2L0_ORYSJ,Q2R2K6_ORYSJ,Q2R2H0_ORYSJ,Q5ZBC0_ORYSJ,B9G667_ORYSJ,Q2R2F1_ORYSJ,A0A0P0Y3K7_ORYSJ,A0A0P0XV52_ORYSJ,A0A0P0XUB1_ORYSJ,A0A0P0V4W2_ORYSJ,A0A0P0Y3Q8_ORYSJ,A0A0P0Y3J7_ORYSJ,A0A0P0Y3E8_ORYSJ,A0A0P0Y3G4_ORYSJ,A0A0P0XV54_ORYSJ Os01g0601675 Os01g0601675 B1085F01.5 OsJ_02500 OSNPB_010601675 P0518F01.27,Os11g0567800 OSNPB_110567800,Os11g0558400 LOC_Os11g35410 Os11g0558400 OSNPB_110558400,LOC_Os10g38450 Os10g0527900 OSNPB_100527900,Os11g0558900 LOC_Os11g35450 Os11g0558900 OsJ_34267 OSNPB_110558900,Os11g0559100 LOC_Os11g35490 OsJ_34268 OSNPB_110559100,Os11g0565000 LOC_Os11g35850 Os11g0565000 OsJ_34287 OSNPB_110565000,Os01g0601625 B1085F01.3 OsJ_02497 OSNPB_010601625 P0518F01.25,Os10g0469300 OsJ_31848 OSNPB_100469300,Os11g0568200 LOC_Os11g36020 Os11g0568200 OsJ_34300 OSNPB_110568200,Os11g0565920 OSNPB_110565920,Os10g0469600 OSNPB_100469600,Os10g0375400 OSNPB_100375400,Os01g0601700 OSNPB_010601700,Os11g0559700 OSNPB_110559700,Os11g0561100 OSNPB_110561100,Os11g0564900 OSNPB_110564900,Os11g0569100 OSNPB_110569100,Os10g0468875 OSNPB_100468875 ENOG411DQUY Q9LQQ1 PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial 52295 Pentatricopeptide repeat-containing protein At1g07740, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2026560; AT1G07740 Pentatricopeptide repeat-containing protein Os05g0548600 protein,Os03g0400901 protein (Fragment) Q0DG81,A0A0P0VYI2 Q0DG81_ORYSJ,A0A0P0VYI2_ORYSJ Os05g0548600 Os05g0548600 OsJ_19438 OSNPB_050548600,Os03g0400901 OSNPB_030400901 ENOG411DQUV TIM50 Q8VYE2,F4I3H1 TIM50_ARATH,F4I3H1_ARATH Mitochondrial import inner membrane translocase subunit TIM50 (Protein EMBRYO DEFECTIVE 1860),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Embryo defective; Preglobular-D. Meinke-2002 FUNCTION: Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. {ECO:0000250}. 42640,41891 Mitochondrial import inner membrane translocase subunit TIM50 (Protein EMBRYO DEFECTIVE 1860),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrion [GO:0005739]; phosphoprotein phosphatase activity [GO:0004721]; protein import into mitochondrial matrix [GO:0030150],integral component of membrane [GO:0016021]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; hydrolase activity [GO:0016787]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in young cotyledons, roots, flowers and leaves. {ECO:0000269|PubMed:14730085}. locus:2012010; AT1G55900 import inner membrane translocase subunit Os05g0513200 protein,Os01g0762400 protein Q0DGT4,A0A0P0V8I5 Q0DGT4_ORYSJ,A0A0P0V8I5_ORYSJ Os05g0513200 Os05g0513200 OSNPB_050513200,Os01g0762400 OSNPB_010762400 ENOG411DQUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0817100 protein Q6K6A0 Q6K6A0_ORYSJ Os02g0817100 OJ1136_C12.10 OsJ_08877 OSNPB_020817100 P0643F09.30 ENOG411DQUS XTH7,XTH6 Q8LER3,Q8LF99 XTH7_ARATH,XTH6_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 7 (At-XTH7) (XTH-7) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 6 (At-XTH6) (XTH-6) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. ARA:AT4G37800-MONOMER;,ARA:AT5G65730-MONOMER; 2.4.1.207 33681,33692 Probable xyloglucan endotransglucosylase/hydrolase protein 7 (At-XTH7) (XTH-7) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 6 (At-XTH6) (XTH-6) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; response to water deprivation [GO:0009414]; xyloglucan metabolic process [GO:0010411] locus:2137609;,locus:2169990; AT4G37800,AT5G65730 Xyloglucan endotransglucosylase hydrolase protein NA NA NA NA NA NA NA ENOG411DQUP FY Q6NLV4,A0A1P8BCJ2,A0A1P8BCM2,F4K3Y7 FY_ARATH,A0A1P8BCJ2_ARATH,A0A1P8BCM2_ARATH,F4K3Y7_ARATH Flowering time control protein FY,Transducin/WD40 repeat-like superfamily protein DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:16033802}. Segregates embryo lethal that arrests at early stages of embryogenesis. Null: Embryo defective; Preglobular; Knockdown: Late flowering-C. Dean-2005 FUNCTION: Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3' end-processing factor. Required for growth and development in plants. {ECO:0000269|PubMed:12809608, ECO:0000269|PubMed:16033802}. R-ATH-72163;R-ATH-77595; 72242,70951,69461,73632 Flowering time control protein FY,Transducin/WD40 repeat-like superfamily protein mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; cell differentiation [GO:0030154]; flower development [GO:0009908]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; embryo development ending in seed dormancy [GO:0009793]; regulation of flower development [GO:0009909] DEVELOPMENTAL STAGE: At globular stage, expressed throughout the embryo, endosperm and surrounding maternal seed tissue. From the heart-stage, expression restricted to the embryo and the funiculus. {ECO:0000269|PubMed:16033802}. TISSUE SPECIFICITY: Expressed in embryos, in shoot and root meristems and in the vasculature. {ECO:0000269|PubMed:16033802}. locus:2185036; AT5G13480 flowering time control protein Os01g0951000 protein (Fragment),Os01g0951000 protein A0A0P0VCW9,A0A0N7KEF1 A0A0P0VCW9_ORYSJ,A0A0N7KEF1_ORYSJ Os01g0951000 OSNPB_010951000 ENOG411DQUN MRH10.1 Q9FND4 Q9FND4_ARATH Transducin family protein / WD-40 repeat family protein (WD-repeat protein-like) (Will die slowly) 59122 Transducin family protein / WD-40 repeat family protein (WD-repeat protein-like) (Will die slowly) locus:2172432; AT5G43920 WD repeat-containing protein Os10g0465000 protein (Fragment),Os10g0465000 protein A0A0P0XV37,A0A0N7KRX1 A0A0P0XV37_ORYSJ,A0A0N7KRX1_ORYSJ Os10g0465000 OSNPB_100465000 ENOG411DQUM Q8L8V4 Q8L8V4_ARATH At3g07640 (Period circadian protein) (Uncharacterized protein At3g07641) 27028 At3g07640 (Period circadian protein) (Uncharacterized protein At3g07641) locus:2091132; AT3G07640 NA Os02g0582400 protein (cDNA clone:J023075I23, full insert sequence),Os02g0582400 protein (Fragment) Q6EPV2,A0A0P0VKU9 Q6EPV2_ORYSJ,A0A0P0VKU9_ORYSJ Os02g0582400 Os02g0582400 OsJ_07285 OSJNBa0016D04.15-1 OSNPB_020582400,Os02g0582400 OSNPB_020582400 ENOG411DQUJ MWD9.26 Q9C915,Q9C914,Q9FMQ5,Q9C913 Q9C915_ARATH,Q9C914_ARATH,Q9FMQ5_ARATH,Q9C913_ARATH Alpha/beta-Hydrolases superfamily protein (At1g74300) (Uncharacterized protein At1g74300) (Uncharacterized protein F1O17.3),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein F1O17.4),Alpha/beta-Hydrolases superfamily protein (Gb|AAF31728.1) (Uncharacterized protein At5g22460),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g74280) (Uncharacterized protein F1O17.5) 38709,42334,39098,42274 Alpha/beta-Hydrolases superfamily protein (At1g74300) (Uncharacterized protein At1g74300) (Uncharacterized protein F1O17.3),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein F1O17.4),Alpha/beta-Hydrolases superfamily protein (Gb|AAF31728.1) (Uncharacterized protein At5g22460),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g74280) (Uncharacterized protein F1O17.5) integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; hydrolase activity [GO:0016787] locus:2019672;,locus:2019677;,locus:2176367;,locus:2019617; AT1G74300,AT1G74290,AT5G22460,AT1G74280 Esterase lipase thioesterase family protein Hydrolase, alpha/beta fold family protein, putative, expressed (Os12g0152100 protein) (cDNA clone:J023038B22, full insert sequence),Os12g0152500 protein (Fragment) Q2QXL8,A0A0N7KTL1 Q2QXL8_ORYSJ,A0A0N7KTL1_ORYSJ Os12g0152100 LOC_Os12g05600 Os12g0152100 OsJ_35244 OSNPB_120152100,Os12g0152500 OSNPB_120152500 ENOG411DQUK SRO5,SRO4 Q9FJJ3,Q9STU1 SRO5_ARATH,SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 (Protein SIMILAR TO RCD ONE 5),Probable inactive poly [ADP-ribose] polymerase SRO4 (Protein SIMILAR TO RCD ONE 4) FUNCTION: Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses. {ECO:0000250}. 34623,35420 Probable inactive poly [ADP-ribose] polymerase SRO5 (Protein SIMILAR TO RCD ONE 5),Probable inactive poly [ADP-ribose] polymerase SRO4 (Protein SIMILAR TO RCD ONE 4) mitochondrion [GO:0005739]; nuclear matrix [GO:0016363]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; multicellular organism development [GO:0007275]; reactive oxygen species metabolic process [GO:0072593]; response to salt stress [GO:0009651],nucleus [GO:0005634]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; multicellular organism development [GO:0007275] locus:2154084;,locus:2100357; AT5G62520,AT3G47720 inactive poly ADP-ribose polymerase NA NA NA NA NA NA NA ENOG411DQUI UNE7 Q9SS69,A0A1I9LPH2 Q9SS69_ARATH,A0A1I9LPH2_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (T12J13.3 protein),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 43823,23949 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (T12J13.3 protein),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein membrane [GO:0016020]; acetylglucosaminyltransferase activity [GO:0008375]; double fertilization forming a zygote and endosperm [GO:0009567]; pollen tube development [GO:0048868],membrane [GO:0016020]; acetylglucosaminyltransferase activity [GO:0008375] locus:2096399; AT3G03690 xylosyltransferase Os10g0437000 protein (Secondary cell wall-related glycosyltransferase family 14, putative, expressed) (cDNA clone:J023087N08, full insert sequence),Os10g0437000 protein Q337V3,A0A0P0XUL9,A0A0P0XUI5 Q337V3_ORYSJ,A0A0P0XUL9_ORYSJ,A0A0P0XUI5_ORYSJ Os10g0437000 LOC_Os10g30080 Os10g0437000 OSNPB_100437000,Os10g0437000 OSNPB_100437000 ENOG411DQUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase Os05g0170300 protein A0A0P0WIF5 A0A0P0WIF5_ORYSJ Os05g0170300 OSNPB_050170300 ENOG411DQUG DAAT,ADCL Q8L493,A0A1P8BC80 DAAA_ARATH,A0A1P8BC80_ARATH D-amino-acid transaminase, chloroplastic (EC 2.6.1.21) (EC 4.1.3.38) (Aminodeoxychorismate lyase) (AtADCL) (Branched-chain-amino-acid aminotransferase-like protein 3),D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein FUNCTION: Amino acid aminotransferase showing activity for D-Asp and D-Ala as amino donors with 2-oxoglutarate as an amino acceptor. Can also use D-Met, D-Tyr, D-Phe, D-Gln, D-Trp and D-Asn as substrates, but no activity with L-Asp, L-Ala, L-Leu, L-Ile or L-Val. Catalyzes also the reverse reaction where an amino group is transferred from D-Glu to pyruvate or oxaloacetate to produce D-Ala or D-Asp, respectively. Also involved in folate biosynthesis, acting as an aminodeoxychorismate lyase converting 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate (PABA)(PubMed:15500462). {ECO:0000269|PubMed:15500462, ECO:0000269|PubMed:18318836}. PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 4-aminobenzoate from chorismate: step 2/2. ARA:AT5G57850-MONOMER;MetaCyc:AT5G57850-MONOMER; 2.6.1.21; 4.1.3.38 41065,32272 D-amino-acid transaminase, chloroplastic (EC 2.6.1.21) (EC 4.1.3.38) (Aminodeoxychorismate lyase) (AtADCL) (Branched-chain-amino-acid aminotransferase-like protein 3),D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 4-amino-4-deoxychorismate lyase activity [GO:0008696]; D-alanine:2-oxoglutarate aminotransferase activity [GO:0047810]; para-aminobenzoic acid biosynthetic process [GO:0008153]; tetrahydrofolate biosynthetic process [GO:0046654],transaminase activity [GO:0008483]; metabolic process [GO:0008152] locus:2174433; AT5G57850 Branched-chain-amino-acid aminotransferase-like protein 3 Os02g0273100 protein (cDNA clone:J023080D02, full insert sequence),Os02g0272850 protein (Fragment) Q0E243,A0A0P0VHG5 Q0E243_ORYSJ,A0A0P0VHG5_ORYSJ Os02g0273100 Os02g0273100 OSNPB_020273100,Os02g0272850 OSNPB_020272850 ENOG411DQUD F3E22.9 Q0WMI7,Q8RWK6,Q8RX04,Q9FPJ2,Q94C86,Q9M7Y3,A0A1I9LN94,A0A178VEB5 Q0WMI7_ARATH,Q8RWK6_ARATH,Q8RX04_ARATH,Q9FPJ2_ARATH,Q94C86_ARATH,Q9M7Y3_ARATH,A0A1I9LN94_ARATH,A0A178VEB5_ARATH Pectin lyase-like superfamily protein,Pectin lyase-like superfamily protein (Uncharacterized protein At3g06770),Pectin lyase-like superfamily protein (Uncharacterized protein At5g49215),AT3g62110 (Pectin lyase-like superfamily protein) (Uncharacterized protein At3g62110),Pectin lyase-like superfamily protein (Putative polygalacturonase),F3E22.9 protein (Pectin lyase-like superfamily protein) ARA:AT5G49215-MONOMER;,ARA:AT3G62110-MONOMER; 48572,48124,48759,51997,49124,40808,48252,39222 Pectin lyase-like superfamily protein,Pectin lyase-like superfamily protein (Uncharacterized protein At3g06770),Pectin lyase-like superfamily protein (Uncharacterized protein At5g49215),AT3g62110 (Pectin lyase-like superfamily protein) (Uncharacterized protein At3g62110),Pectin lyase-like superfamily protein (Putative polygalacturonase),F3E22.9 protein (Pectin lyase-like superfamily protein) lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975],extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; vacuole [GO:0005773]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2083383;,locus:504954979;,locus:2098038;,locus:2086740; AT5G49215,AT3G06770,AT3G62110,AT3G16850 glycoside hydrolase family 28 protein Glycoside hydrolase family 28 protein, putative, expressed (Os03g0833800 protein) (Putative polygalacturonase) (cDNA clone:J013058D09, full insert sequence),Os12g0554800 protein (Fragment),Os07g0245200 protein (Putative polygalacturonase),Glycoside hydrolase family 28 protein, putative, expressed (Os11g0658800 protein) Q75LI0,Q0IMQ3,Q6ZLN7,Q2R052 Q75LI0_ORYSJ,Q0IMQ3_ORYSJ,Q6ZLN7_ORYSJ,Q2R052_ORYSJ Os03g0833800 LOC_Os03g61800 Os03g0833800 OSJNBa0096I06.27 OSNPB_030833800,Os12g0554800 Os12g0554800 OSNPB_120554800,Os07g0245200 OJ1058_C08.16 OSNPB_070245200,Os11g0658800 LOC_Os11g43750 Os11g0658800 OsJ_34717 OSNPB_110658800 ENOG411DQUE PAT11 Q9LIH7 ZDHC7_ARATH Protein S-acyltransferase 11 (EC 2.3.1.225) (Probable palmitoyltransferase At3g18620) (Zinc finger DHHC domain-containing protein At3g18620) FUNCTION: S-acyltransferase involved in protein lipid modification. {ECO:0000269|PubMed:22968831, ECO:0000269|Ref.4}. 2.3.1.225; 2.3.1.225 37863 Protein S-acyltransferase 11 (EC 2.3.1.225) (Probable palmitoyltransferase At3g18620) (Zinc finger DHHC domain-containing protein At3g18620) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2086894; AT3G18620 zinc finger S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) (Fragment),Os06g0308900 protein A0A0P0WG92,A0A0P0WW89 A0A0P0WG92_ORYSJ,A0A0P0WW89_ORYSJ Os04g0674450 OSNPB_040674450,Os06g0308900 OSNPB_060308900 ENOG411DQUB T11I11.180,ARO2 Q9SW41,Q9FKW5 Q9SW41_ARATH,Q9FKW5_ARATH Armadillo repeat only 1 (Uncharacterized protein AT4g34940) (Uncharacterized protein T11I11.180),Armadillo repeat only 2 (Uncharacterized protein At5g66200) Gametophytic effect. Cannot be transmitted by male gametophyte. Therefore homozygote plants cannot be recovered. Pollen tubes either burst immediately upon germination or are short and plump. Pollen tubes are unable to penetrate the cell wall of stigmatic cells. Pollen tube actin cytoskeleton is severely disorganized.,Allele cannot be transmitted through pollen therefore homozygote plants cannot be recovered. Pollen tubes either burst immediately upon germination or are short and plump. Pollen tubes are unable to penetrate the cell wall of stigmatic cells. Pollen tube actin cytoskeleton is severely disorganized.,WT phenotype exhibited by both heterozygous and homozygous plants.,WT phenotype exhibited by both heterozygous and homozygous plants. Complete male gametophyte defective-S. Sprunck-2008 72968,70813 Armadillo repeat only 1 (Uncharacterized protein AT4g34940) (Uncharacterized protein T11I11.180),Armadillo repeat only 2 (Uncharacterized protein At5g66200) cytoplasm [GO:0005737]; nucleus [GO:0005634]; pollen tube tip [GO:0090404]; actin cytoskeleton organization [GO:0030036]; pollen tube growth [GO:0009860],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886] locus:2116850;,locus:2156932; AT4G34940,AT5G66200 armadillo beta-catenin repeat family protein NA NA NA NA NA NA NA ENOG411DQUC O80846 O80846_ARATH Eukaryotic initiation factor 3 gamma subunit family protein (Expressed protein) (Uncharacterized protein At2g45730) (Uncharacterized protein At2g45730; F4I18.29) FUNCTION: Substrate-binding subunit of tRNA (adenine-N1-)-methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. {ECO:0000256|PIRNR:PIRNR038170}. 49411 Eukaryotic initiation factor 3 gamma subunit family protein (Expressed protein) (Uncharacterized protein At2g45730) (Uncharacterized protein At2g45730; F4I18.29) tRNA (m1A) methyltransferase complex [GO:0031515]; translation initiation factor activity [GO:0003743]; tRNA methylation [GO:0030488] locus:2043714; AT2G45730 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 Q7XQC2 Q7XQC2_ORYSJ Os04g0112300 OSJNBb0021I10.2 OSJNBb0060M15.9 OSNPB_040112300 FUNCTION: Substrate-binding subunit of tRNA (adenine-N1-)-methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. {ECO:0000256|PIRNR:PIRNR038170}. ENOG411DQUA DGL Q9SIN9,Q9MA46 PLA13_ARATH,PLA12_ARATH Phospholipase A1-Ialpha2, chloroplastic (EC 3.1.1.-),Galactolipase DONGLE, chloroplastic (EC 3.1.1.26) (EC 3.1.1.32) (DAD1-like lipase 6) (Phospholipase A1 DONGLE) (Phospholipase A1-Ialpha1) DISRUPTION PHENOTYPE: No visible phenotype under standard growth phenotype. {ECO:0000269|PubMed:20348210}. FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine at the sn-1 position. Has a strong galactolipase activity toward monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG). Low triacylglycerol (TAG) lipase activity. Plays a role in plant growth and in leaf senescence. {ECO:0000269|PubMed:17259290}.,FUNCTION: Sn-1-specific phospholipase that releases free fatty acids from phosphatidylcholine. Has a higher galactolipase activity than phospholipase A1 activity when digalactosyldiacylglycerol (DGDG) is used as substrate. Catalyzes the initial step of jasmonic acid biosynthesis. Required for the biosynthesis of basal-level endogenous jasmonate in vegetative tissues. Regulates leaves growth. Not essential for jasmonate biosynthesis after wounding or upon pathogen infection. {ECO:0000269|PubMed:18267087, ECO:0000269|PubMed:20348210}. MISCELLANEOUS: Overexpression of DGL causes a dwarf phenotype. ARA:AT2G31690-MONOMER;,ARA:AT1G05800-MONOMER; 3.1.1.-,3.1.1.26; 3.1.1.32 54924,52800 Phospholipase A1-Ialpha2, chloroplastic (EC 3.1.1.-),Galactolipase DONGLE, chloroplastic (EC 3.1.1.26) (EC 3.1.1.32) (DAD1-like lipase 6) (Phospholipase A1 DONGLE) (Phospholipase A1-Ialpha1) chloroplast stroma [GO:0009570]; plastoglobule [GO:0010287]; galactolipase activity [GO:0047714]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; triglyceride lipase activity [GO:0004806]; leaf senescence [GO:0010150]; thylakoid membrane organization [GO:0010027]; triglyceride catabolic process [GO:0019433],chloroplast [GO:0009507]; lipid droplet [GO:0005811]; 1-18:1-2-16:0-monogalactosyldiacylglycerol lipase activity [GO:0102549]; 1-acyl-2-lysophosphatidylserine acylhydrolase activity [GO:0052740]; galactolipase activity [GO:0047714]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; phosphatidylserine 1-acylhydrolase activity [GO:0052739]; defense response to fungus [GO:0050832]; jasmonic acid biosynthetic process [GO:0009695]; lipid catabolic process [GO:0016042]; negative regulation of cell growth [GO:0030308]; response to wounding [GO:0009611] DEVELOPMENTAL STAGE: Induced during senescence. {ECO:0000269|PubMed:17259290}. TISSUE SPECIFICITY: Ubiquitous. Highest expression in flowers and leaves. {ECO:0000269|PubMed:17259290, ECO:0000269|PubMed:19527719}.,TISSUE SPECIFICITY: Expressed in leaves and seedlings. Not detected in flowers, siliques or roots. {ECO:0000269|PubMed:18267087, ECO:0000269|PubMed:19527719}. locus:2065873;,locus:2198728; AT2G31690,AT1G05800 galactolipase DONGLE NA NA NA NA NA NA NA ENOG411E75X Q9LI85 Q9LI85_ARATH Transmembrane protein 18705 Transmembrane protein integral component of membrane [GO:0016021] locus:1009023261; AT3G25597 NA NA NA NA NA NA NA NA ENOG411DQSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter NA NA NA NA NA NA NA ENOG411E08N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HIT zinc finger NA NA NA NA NA NA NA ENOG411E08H CML22 Q9LRN6 CML22_ARATH Probable calcium-binding protein CML22 (Calmodulin-like protein 22) FUNCTION: Potential calcium sensor. {ECO:0000250}. 26266 Probable calcium-binding protein CML22 (Calmodulin-like protein 22) calcium ion binding [GO:0005509] locus:2093716; AT3G24110 calcium-binding protein NA NA NA NA NA NA NA ENOG411E08G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPR1/NIM1 like defence protein C terminal BTB/POZ domain and ankyrin repeat-containing protein NPR3 (OsNPR3),BTB/POZ domain containing protein, expressed (Os03g0667100 protein) Q75HA6,Q10FI1 NPR3_ORYSJ,Q10FI1_ORYSJ NPR3 NH3 Os03g0667100 LOC_Os03g46440 OsJ_12014 OSJNBa0056E06.6,Os03g0667100 LOC_Os03g46440 OSNPB_030667100 FUNCTION: Involved in defense response against the bacterial blight disease caused by Xanthomonas oryzae pv. oryzae (Xoo). Plants expressing an NPR3/NH3 transgene driven by its native promoter show enhanced resistance to the Xoo pathogen, and exhibit elevated sensitivity to benzothiadiazole (BTH) treatment and enhanced induction of defense-related genes upon treatment with BTH (PubMed:20561248). Intriguingly, constitutive over-expression of NPR3/NH3 with a ubiquitin promoter does not confer disease resistance to Xoo (PubMed:17309686). {ECO:0000269|PubMed:17309686, ECO:0000269|PubMed:20561248}. ENOG411E08F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3475) OSJNBa0088K19.7 protein (Os04g0433600 protein),Os04g0433600 protein (Fragment) Q7XUZ4,A0A0P0WAJ9,A0A0P0WAC3 Q7XUZ4_ORYSJ,A0A0P0WAJ9_ORYSJ,A0A0P0WAC3_ORYSJ Os04g0433600 OsJ_14871 OSJNBa0088K19.7 OSNPB_040433600,Os04g0433600 OSNPB_040433600 ENOG411E08E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Dehydrin Rab25 (Drought-resistant protein 1) (rDRP1),Os01g0702450 protein,Os01g0702500 protein (Fragment) P30287,A0A0P0V788,A0A0P0V781 DHR25_ORYSJ,A0A0P0V788_ORYSJ,A0A0P0V781_ORYSJ RAB25 Os01g0702500 LOC_Os01g50700 P0421H07.13,Os01g0702450 OSNPB_010702450,Os01g0702500 OSNPB_010702500 ENOG411E08C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Glutaredoxin-like (Os01g0829400 protein) (cDNA clone:002-130-C12, full insert sequence),Os10g0343900 protein (Fragment),Os05g0471100 protein (Os05g0471350 protein),Os08g0554699 protein,Os02g0741000 protein (Fragment) Q941V7,Q0IYB0,Q6ATX0,A0A0P0XIH9,A0A0P0VP98 Q941V7_ORYSJ,Q0IYB0_ORYSJ,Q6ATX0_ORYSJ,A0A0P0XIH9_ORYSJ,A0A0P0VP98_ORYSJ Os01g0829400 Os01g0829400 B1088C09.33 OSNPB_010829400 P0446G04.6,Os10g0343900 OSNPB_100343900,Os05g0471350 Os05g0471100 OSJNBa0052E20.11 OSNPB_050471350 P0015C02.6,Os08g0554699 OSNPB_080554699,Os02g0741000 OSNPB_020741000 ENOG411E08B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411E08A ACA9,ACA8,ACA10,MNB8.7 Q9LU41,Q9LF79,Q9SZR1,F4KHQ2,A0A1P8BEZ2 ACA9_ARATH,ACA8_ARATH,ACA10_ARATH,F4KHQ2_ARATH,A0A1P8BEZ2_ARATH Calcium-transporting ATPase 9, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9),Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8),Calcium-transporting ATPase 10, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10),Calcium-transporting ATPase slightly retarded. Leaves contained undegraded starch at the end of night. FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles. {ECO:0000250}.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into the endoplasmic reticulum. {ECO:0000250}. ARA:AT3G21180-MONOMER;,ARA:AT5G57110-MONOMER;,ARA:AT4G29900-MONOMER; R-ATH-418359;R-ATH-5578775;R-ATH-936837; 3.6.3.8; 3.6.3.8 118768,116174,116858,115801,85028 Calcium-transporting ATPase 9, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9),Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8),Calcium-transporting ATPase 10, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10),Calcium-transporting ATPase integral component of plasma membrane [GO:0005887]; intracellular membrane-bounded organelle [GO:0043231]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872]; pollen development [GO:0009555]; single fertilization [GO:0007338],integral component of plasma membrane [GO:0005887]; intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872]; protein self-association [GO:0043621]; response to nematode [GO:0009624],integral component of plasma membrane [GO:0005887]; intracellular membrane-bounded organelle [GO:0043231]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; nucleotide binding [GO:0000166] locus:2094726;,locus:2175579;,locus:2123924;,locus:2168397; AT3G21180,AT5G57110,AT4G29900,AT5G53010 calcium-transporting ATPase 9 plasma membrane-type-like Calcium-transporting ATPase 5, plasma membrane-type (OsACA5) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 5) (OsACA6),Calcium-transporting ATPase (EC 3.6.3.8) Q7X8B5,A0A0P0VFR4 ACA5_ORYSJ,A0A0P0VFR4_ORYSJ ACA5 Os04g0605500 LOC_Os04g51610 OsJ_16068 OSJNBa0035M09.2 OSJNBb0015N08.12,Os02g0176700 OSNPB_020176700 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles (By similarity). Involved in salt and drought stress tolerance (PubMed:24128296). Involved in cold stress tolerance (PubMed:24992889). {ECO:0000250, ECO:0000269|PubMed:24128296, ECO:0000269|PubMed:24992889}.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. {ECO:0000256|RuleBase:RU361146}. ENOG411E08Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) Os09g0416600 protein (cDNA clone:002-103-E02, full insert sequence),Os09g0416600 protein,Os03g0343200 protein Q6EQ09,A0A0P0XLT9,A0A0P0VXC3 Q6EQ09_ORYSJ,A0A0P0XLT9_ORYSJ,A0A0P0VXC3_ORYSJ P0014G10.19-1 Os09g0416600 P0707C02.39-1 OSNPB_090416600,Os09g0416600 OSNPB_090416600,Os03g0343200 OSNPB_030343200 ENOG411E08Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0648500 protein Q67WY8 Q67WY8_ORYSJ Os06g0648500 Os06g0648500 OSJNBa0062J02.24 OSNPB_060648500 ENOG411E08X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Os07g0423000 protein (cDNA clone:002-145-H07, full insert sequence) Q6Z3Q4 Q6Z3Q4_ORYSJ Os07g0423000 Os07g0423000 OsJ_24009 OSJNBa0084P08.15 OSNPB_070423000 ENOG411E08W ATCRT1 Q9FM98,Q9ZVU8,A0A1P8AQV3 Q9FM98_ARATH,Q9ZVU8_ARATH,A0A1P8AQV3_ARATH RING/U-box superfamily protein (Uncharacterized protein At5g56340),At1g55530/T5A14_7 (RING/U-box superfamily protein) (T5A14.7 protein),RING/U-box superfamily protein R-ATH-983168; 44360,38963,35597 RING/U-box superfamily protein (Uncharacterized protein At5g56340),At1g55530/T5A14_7 (RING/U-box superfamily protein) (T5A14.7 protein),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2161058;,locus:2193874; AT5G56340,AT1G55530 zinc finger (C3HC4-type RING finger) family protein Os03g0812200 protein (Putative ring finger protein) (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:001-010-F10, full insert sequence) (cDNA clone:J013111A16, full insert sequence) Q7XZF6 Q7XZF6_ORYSJ LOC_Os03g59760 Os03g0812200 OsJ_13080 OSJNBa0024F18.35 OSJNBb0033J23.18 OSNPB_030812200 ENOG411E08V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 43 Probable glucuronosyltransferase Os07g0694400 (EC 2.4.-.-) Q6Z3Y6 GT71_ORYSJ Os07g0694400 LOC_Os07g49370 P0627E10.10 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411E08U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os05g0211100 protein (Putative cytochrome P450),Os07g0567200 protein Q6L4I8,A0A0P0X7M6 Q6L4I8_ORYSJ,A0A0P0X7M6_ORYSJ Os05g0211100 Os05g0211100 OSJNBa0074P11.4 OSNPB_050211100,Os07g0567200 OSNPB_070567200 ENOG411E08T Q9LVF2 Q9LVF2_ARATH Transducin family protein / WD-40 repeat family protein R-ATH-6791226; 106066 Transducin family protein / WD-40 repeat family protein nucleolus [GO:0005730]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; maturation of SSU-rRNA [GO:0030490] locus:2089855; AT3G21540 WD repeat-containing protein Os03g0151700 protein (Phage head-tail adaptor family protein, expressed) (cDNA clone:J033032N04, full insert sequence),Os03g0151700 protein (Fragment) Q10RP1,A0A0P0VT37 Q10RP1_ORYSJ,A0A0P0VT37_ORYSJ LOC_Os03g05720 Os03g0151700 OSNPB_030151700,Os03g0151700 OSNPB_030151700 ENOG411E08S A0A1P8AZG2,Q5S4X7 A0A1P8AZG2_ARATH,Q5S4X7_ARATH FAD-dependent oxidoreductase family protein 32649,45680 FAD-dependent oxidoreductase family protein oxidoreductase activity [GO:0016491],cytoplasm [GO:0005737]; oxidoreductase activity [GO:0016491] locus:2066060; AT2G22650 )-oxidoreductase Os06g0181400 protein A0A0P0WTI0 A0A0P0WTI0_ORYSJ Os06g0181400 OSNPB_060181400 ENOG411E08R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0401100 protein (Protein kinase domain containing protein, expressed) Q10K10 Q10K10_ORYSJ Os03g0401100 LOC_Os03g28300 OSNPB_030401100 ENOG411E08Q T14E10_140 Q9M1H1 Q9M1H1_ARATH Calmodulin-binding protein-related (Plant calmodulin-binding protein-like protein) (Uncharacterized protein T14E10_140) 47207 Calmodulin-binding protein-related (Plant calmodulin-binding protein-like protein) (Uncharacterized protein T14E10_140) calmodulin binding [GO:0005516] locus:2096966; AT3G54570 Plant calmodulin-binding domain NA NA NA NA NA NA NA ENOG411E08P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Chitinase (EC 3.2.1.14) (Os01g0860500 protein) (cDNA clone:001-007-A04, full insert sequence) (cDNA clone:006-203-C02, full insert sequence) (cDNA clone:J023091F16, full insert sequence) O49827 O49827_ORYSJ Os01g0860500 Os01g0860500 OSNPB_010860500 P0489B03.31 P0679C12.21 ENOG411E089 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 Os09g0533200 protein (Fragment) A0A0P0XQ41 A0A0P0XQ41_ORYSJ Os09g0533200 OSNPB_090533200 ENOG411E088 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein NA NA NA NA NA NA NA ENOG411E086 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os10g0530300 protein A0A0P0XWH4 A0A0P0XWH4_ORYSJ Os10g0530300 OSNPB_100530300 ENOG411E085 Q8GW25 Q8GW25_ARATH At4g10100 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At4g10110/F28M11_30) 19342 At4g10100 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At4g10110/F28M11_30) RNA binding [GO:0003723] locus:2124670; AT4G10110 RNA recognition motif-containing protein Os05g0427300 protein (cDNA clone:J013089N11, full insert sequence),Os01g0876500 protein,Os05g0427300 protein (cDNA clone:001-038-E05, full insert sequence) (cDNA clone:001-041-A02, full insert sequence) (cDNA clone:006-309-A11, full insert sequence) (cDNA clone:J013095G08, full insert sequence) B7EPH5,Q0JH94,Q0DI02 B7EPH5_ORYSJ,Q0JH94_ORYSJ,Q0DI02_ORYSJ Os05g0427300 OSNPB_050427300,Os01g0876500 Os01g0876500 OSNPB_010876500,Os05g0427300 Os05g0427300 OsJ_18618 OSNPB_050427300 ENOG411E084 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3755) Os04g0673000 protein,Os04g0673000 protein (cDNA clone:J013057D02, full insert sequence),Os04g0673000 protein (cDNA clone:J013147K07, full insert sequence) Q0J943,B7EBX1,B7EEU3 Q0J943_ORYSJ,B7EBX1_ORYSJ,B7EEU3_ORYSJ Os04g0673000 Os04g0673000 OSNPB_040673000,Os04g0673000 OSNPB_040673000 ENOG411E082 F4J3F2,F4J3F3 F4J3F2_ARATH,F4J3F3_ARATH ARM repeat superfamily protein 92370,122035 ARM repeat superfamily protein locus:2076666; AT3G57570 NA NA NA NA NA NA NA NA ENOG411E9W7 TAT3 Q9SK47 TAT3_ARATH Probable aminotransferase TAT3 (EC 2.6.1.-) (Tyrosine aminotransferase 3) MISCELLANEOUS: Induction by wounding requires COI1. ARA:AT2G24850-MONOMER; R-ATH-71182; 2.6.1.- 48819 Probable aminotransferase TAT3 (EC 2.6.1.-) (Tyrosine aminotransferase 3) L-tyrosine:2-oxoglutarate aminotransferase activity [GO:0004838]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in roots, leaves and cauline leaves. {ECO:0000269|PubMed:9342878}. locus:2047441; AT2G24850 Beta-eliminating lyase NA NA NA NA NA NA NA ENOG411E9W6 Q9LZ12 Q9LZ12_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis related protein-like) 22790 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis related protein-like) extracellular region [GO:0005576] locus:2151211; AT5G02730 SCP NA NA NA NA NA NA NA ENOG411E9W5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9W4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alginate lyase NA NA NA NA NA NA NA ENOG411E9W3 GSTF3,GSTF2 Q9SLM6,P46422 GSTF3_ARATH,GSTF2_ARATH Glutathione S-transferase F3 (AtGSTF3) (EC 2.5.1.18) (GST class-phi member 3) (Glutathione S-transferase 16),Glutathione S-transferase F2 (AtGSTF2) (EC 2.5.1.18) (24 kDa auxin-binding protein) (AtPM24) (GST class-phi member 2) FUNCTION: Binds a series of heterocyclic compounds, including lumichrome, harmane, norharmane and indole-3-aldehyde. May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.,FUNCTION: Binds auxin, endogenous flavonoids and the phytoalexin camalexin and may be involved in regulating the binding and transport of small bioactive natural products and defense-related compounds during plant stress. Binds a series of heterocyclic compounds, including lumichrome, harmane, norharmane and indole-3-aldehyde. In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and benzyl isothiocyanate (BITC). Acts as glutathione peroxidase on cumene hydroperoxide, linoleic acid-13-hydroperoxide and trans-stilbene oxide, but not trans-cinnamic acid or IAA-CoA. {ECO:0000269|PubMed:12090627, ECO:0000269|PubMed:21631432}. ARA:AT2G02930-MONOMER;,ARA:AT4G02520-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 24121,24129 Glutathione S-transferase F3 (AtGSTF3) (EC 2.5.1.18) (GST class-phi member 3) (Glutathione S-transferase 16),Glutathione S-transferase F2 (AtGSTF2) (EC 2.5.1.18) (24 kDa auxin-binding protein) (AtPM24) (GST class-phi member 2) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; glutathione transferase activity [GO:0004364]; defense response to fungus [GO:0050832]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; camalexin binding [GO:2001147]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; peroxidase activity [GO:0004601]; protein domain specific binding [GO:0019904]; quercitrin binding [GO:2001227]; auxin-activated signaling pathway [GO:0009734]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043]; toxin catabolic process [GO:0009407] TISSUE SPECIFICITY: Expressed in the root-shoot transition zone and root tips. {ECO:0000269|PubMed:14617075}. locus:2056685;,locus:2132308; AT2G02930,AT4G02520 May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides NA NA NA NA NA NA NA ENOG411E9W2 SUC6,SUC8,SUC5,SUC7,SUC9,SUC1,SUC2 Q6A329,Q9ZVK6,Q9C8X2,Q67YF8,Q9FG00,Q39232,Q39231,Q2V4E7,F4IEW7 SUC6_ARATH,SUC8_ARATH,SUC5_ARATH,SUC7_ARATH,SUC9_ARATH,SUC1_ARATH,SUC2_ARATH,Q2V4E7_ARATH,F4IEW7_ARATH Putative sucrose transport protein SUC6 (Sucrose permease 6) (Sucrose-proton symporter 6),Sucrose transport protein SUC8 (Sucrose permease 8) (Sucrose-proton symporter 8),Sucrose transport protein SUC5 (Sucrose permease 5) (Sucrose-proton symporter 5),Sucrose transport protein SUC7 (Sucrose permease 7) (Sucrose-proton symporter 7),Sucrose transport protein SUC9 (Sucrose permease 9) (Sucrose-proton symporter 9),Sucrose transport protein SUC1 (Sucrose permease 1) (Sucrose-proton symporter 1),Sucrose transport protein SUC2 (Sucrose permease 2) (Sucrose transporter 1) (Sucrose-proton symporter 2),Sucrose-proton symporter 7 DISRUPTION PHENOTYPE: Significant but transient reduction in fatty acid concentration in developing seeds. Slight delay in embryo development. {ECO:0000269|PubMed:16146522}.,DISRUPTION PHENOTYPE: Early flowering phenotype under short-day conditions. {ECO:0000269|PubMed:17098854}.,DISRUPTION PHENOTYPE: Defective pollen with low rate of germination. Reduction of anthocyanin accumulation in response to exogenous sucrose or maltose. {ECO:0000269|PubMed:18359840}. Male gametophyte defective; Homozygotes are viable: Low anthocyanin levels in response to sugar-J. Ward-2008,Seedling lethal without exogenous sucrose-M. Sussman-2000 FUNCTION: May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose.,FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. {ECO:0000269|PubMed:15361146}.,FUNCTION: Responsible in a heterologous system for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport biotin, and probably maltose at a lesser rate. In planta, the role of SUC5 for the transport of sucrose seems to be negligible. Plays a role in the nutrition of the filial tissues during early seed development and is probably involved in the import of biotin into the endosperm and the embryo epidermis. {ECO:0000269|PubMed:11115131, ECO:0000269|PubMed:16146522, ECO:0000269|PubMed:23031218}.,FUNCTION: High-affinity sucrose transporter. Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport a wide range of glucosides, such as helicin, salicin, arbutin, maltose, fraxin, esculin, uranose, alpha-methylglucoside, alpha-phenylglucoside and beta-phenylglucoside. Plays a role in flowering time transition delay. {ECO:0000269|PubMed:15361146, ECO:0000269|PubMed:17098854}.,FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). This transport is both voltage- and energy-dependent. Can also transport other glucosides such as maltose, alpha-phenylglucoside and beta-phenylglucoside. May also transport biotin. Required for normal pollen germination and anthocyanin accumulation induced by sucrose. {ECO:0000269|PubMed:10476074, ECO:0000269|PubMed:18359840, ECO:0000269|PubMed:7920705, ECO:0000269|PubMed:9307438}.,FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin (hydroquinone-beta-D-glucoside), salicin (2-(hydroxymethyl)phenyl-beta-D-glucoside), alpha-phenylglucoside, beta-phenylglucoside, alpha-paranitrophenylglucoside, beta-paranitrophenylglucoside, and paranitrophenyl-beta-thioglucoside. May also transport biotin. Required for apoplastic phloem sucrose loading in source tissues (e.g. leaves) in order to transport it to sink tissues (e.g. roots, flowers). {ECO:0000269|PubMed:11087840, ECO:0000269|PubMed:12954621, ECO:0000269|PubMed:7920705}. PATHWAY: Glycan biosynthesis; sucrose metabolism. MetaCyc:AT1G71880-MONOMER;,MetaCyc:AT1G22710-MONOMER; R-ATH-189200; 52727,52748,54834,52873,52578,54858,54547,45634,50402 Putative sucrose transport protein SUC6 (Sucrose permease 6) (Sucrose-proton symporter 6),Sucrose transport protein SUC8 (Sucrose permease 8) (Sucrose-proton symporter 8),Sucrose transport protein SUC5 (Sucrose permease 5) (Sucrose-proton symporter 5),Sucrose transport protein SUC7 (Sucrose permease 7) (Sucrose-proton symporter 7),Sucrose transport protein SUC9 (Sucrose permease 9) (Sucrose-proton symporter 9),Sucrose transport protein SUC1 (Sucrose permease 1) (Sucrose-proton symporter 1),Sucrose transport protein SUC2 (Sucrose permease 2) (Sucrose transporter 1) (Sucrose-proton symporter 2),Sucrose-proton symporter 7 integral component of plasma membrane [GO:0005887]; sucrose transmembrane transporter activity [GO:0008515]; symporter activity [GO:0015293]; sucrose metabolic process [GO:0005985],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; biotin transporter activity [GO:0015225]; sucrose transmembrane transporter activity [GO:0008515]; symporter activity [GO:0015293]; seed development [GO:0048316]; sucrose metabolic process [GO:0005985],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; arbutin transmembrane transporter activity [GO:0042951]; maltose:proton symporter activity [GO:0005364]; salicin transmembrane transporter activity [GO:0042950]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; flower development [GO:0009908]; glucoside transport [GO:0042946]; maltose transport [GO:0015768]; regulation of flower development [GO:0009909]; sucrose metabolic process [GO:0005985],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; sucrose:proton symporter activity [GO:0008506]; pollen germination [GO:0009846]; response to nematode [GO:0009624]; sucrose metabolic process [GO:0005985],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; sucrose:proton symporter activity [GO:0008506]; sucrose metabolic process [GO:0005985],integral component of plasma membrane [GO:0005887]; sucrose transmembrane transporter activity [GO:0008515] DEVELOPMENTAL STAGE: Expressed in developing seeds 3 to 4 days after flowering (DAF) in the micropylar region of the endosperm. At 6 DAF, expressed the micropylar pole. At the globular stage of embryo development, expressed specifically in the endosperm and then extends to the chalazal pole of the endosperm at the torpedo stage. The expression decreases at the upturned-U stage, 9 DAF, as the endosperm becomes limited to a few cell layers embedding the maturing embryo. Expressed in the embryo at the later stages of development. {ECO:0000269|PubMed:16146522, ECO:0000269|PubMed:23031218}.,DEVELOPMENTAL STAGE: Transcripts accumulate in mature pollen before and during germination, but translation starts only when pollen germination initiates, and continues in pollen tubes. Expressed in cells surrounding the vascular bundle of the anther connective tissue, mostly at the dehiscence time. Also present in a ring of parenchymatic cells between the xylem vessels of the style (upper end of the transmitting tract toward which pollen tubes grow). Expressed in the epidermal cell layers of funiculi (at protein level). {ECO:0000269|PubMed:10476074}.,DEVELOPMENTAL STAGE: First seen in the tips of young rosette leaves. In older leaves and during their concomitant sink/source transition, expression proceeded from the tips to the bases of the leaves. {ECO:0000269|PubMed:7647685}. TISSUE SPECIFICITY: Specifically expressed in flowers, along the transmitting tissue and at the funiculi. {ECO:0000269|PubMed:15361146}.,TISSUE SPECIFICITY: Widely expressed. Expressed in the endosperm and on the epidermis of the outer surface of the cotyledons of torpedo-stage or older embryos. {ECO:0000269|PubMed:11115131, ECO:0000269|PubMed:23031218}.,TISSUE SPECIFICITY: Expressed in anthers. {ECO:0000269|PubMed:15361146}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:15361146, ECO:0000269|PubMed:17098854}.,TISSUE SPECIFICITY: Expressed in flowers (at protein level). Highly expressed in pollen. Expressed in pollen tubes and root vascular cylinder, pericycle and endodermis. {ECO:0000269|PubMed:10476074, ECO:0000269|PubMed:18359840}.,TISSUE SPECIFICITY: Expressed in leaves and, to a lower extent, in roots, flowers and stems. Highly specific to the phloem, exclusively localized in companion cells (at protein level). {ECO:0000269|PubMed:12689351, ECO:0000269|PubMed:7647685, ECO:0000269|PubMed:7920705, ECO:0000269|Ref.7}. locus:2158352;,locus:2064253;,locus:2016074;,locus:2028947;,locus:2160732;,locus:2016069;,locus:2199633; AT5G43610,AT2G14670,AT1G71890,AT1G66570,AT5G06170,AT1G71880,AT1G22710 into the cell with the concomitant uptake of protons (symport system) NA NA NA NA NA NA NA ENOG411E9W1 Q9LRZ4,A0A1I9LQT0,A0A1I9LQS9 P2C41_ARATH,A0A1I9LQT0_ARATH,A0A1I9LQS9_ARATH Probable protein phosphatase 2C 41 (AtPP2C41) (EC 3.1.3.16),Protein phosphatase 2C family protein R-ATH-70895; 3.1.3.16 38601,28323,25659 Probable protein phosphatase 2C 41 (AtPP2C41) (EC 3.1.3.16),Protein phosphatase 2C family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; drought recovery [GO:0009819]; microtubule cytoskeleton organization [GO:0000226]; negative regulation of growth [GO:0045926]; protein dephosphorylation [GO:0006470],protein serine/threonine phosphatase activity [GO:0004722] locus:2086755; AT3G16800 phosphatase 2C NA NA NA NA NA NA NA ENOG411E9W0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MIZ/SP-RING zinc finger NA NA NA NA NA NA NA ENOG411E9W9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os10g0197000 protein A0A0P0XSS8 A0A0P0XSS8_ORYSJ Os10g0197000 OSNPB_100197000 ENOG411E9W8 MYB14,MYB13 Q9SJX8,Q9LNC9 MYB14_ARATH,MYB13_ARATH Transcription factor MYB14 (Myb-related protein 14) (AtMYB14) (MYB14At),Transcription factor MYB13 (ATMYBL1) (Myb-related protein 13) (AtMYB13) DISRUPTION PHENOTYPE: Increased tolerance to freezing stress and higher accumulation of CBF genes and downstream genes under cold treatment. {ECO:0000269|PubMed:24415840}. FUNCTION: Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.,FUNCTION: Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}. MISCELLANEOUS: Plants expressing ectopically MYB13 display peculiar hook structure at pedicel branching points, and a reversed order of first flowers and axillary buds. {ECO:0000269|PubMed:9681014}. 28769,27951 Transcription factor MYB14 (Myb-related protein 14) (AtMYB14) (MYB14At),Transcription factor MYB13 (ATMYBL1) (Myb-related protein 13) (AtMYB13) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to cold [GO:0009409]; response to ethylene [GO:0009723]; response to freezing [GO:0050826]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.,TISSUE SPECIFICITY: Expressed in roots and flowers. Expressed in shoot apex, axillary buds, at the basis of flowers and branching points of inflorescences. {ECO:0000269|PubMed:9681014}. locus:2042526;,locus:2038520; AT2G31180,AT1G06180 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E9WW FAF1 Q9SY06 FAF1_ARATH Protein FANTASTIC FOUR 1 alterations in F-actin organization in expanding trichomes FUNCTION: Able to repress WUS when constitutively overexpressed, but have no effect on CLV3. {ECO:0000269|PubMed:21176196}. 31197 Protein FANTASTIC FOUR 1 DEVELOPMENTAL STAGE: Expressed throughout development. During germination, initially restricted to the hypocotyl, but expression gradually shifts to the root and on day 6, to the vasculature of the cotyledons and then of the leaves. Increased expression in the shoot apex during the transition to flowering. Induced in the inflorescence vasculature and young flower buds as flowering commenced. Expressed in developing embryos from the early heart stage until torpedo stage. {ECO:0000269|PubMed:21176196}. TISSUE SPECIFICITY: Expressed in the shoot apex, stamens, anthers and young siliques. Detected in provascular and vascular tissue. {ECO:0000269|PubMed:21176196}. locus:2140205; AT4G02810 Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411E9WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9WT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os05g0338900 protein A0A0P0WL01 A0A0P0WL01_ORYSJ Os05g0338900 OSNPB_050338900 ENOG411E9WS F4JAA2,A0A1I9LS71,A0A1I9LS72,A0A1I9LS74,A0A1I9LS73,A0A1I9LS70 F4JAA2_ARATH,A0A1I9LS71_ARATH,A0A1I9LS72_ARATH,A0A1I9LS74_ARATH,A0A1I9LS73_ARATH,A0A1I9LS70_ARATH Protein kinase superfamily protein 53954,48190,48799,38276,44924,57830 Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672] AT3G46930 STYKc NA NA NA NA NA NA NA ENOG411E9WQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily NA NA NA NA NA NA NA ENOG411E9WY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os06g0218200 protein (Fragment),Os06g0484950 protein (Fragment),Os08g0326300 protein (Fragment) A0A0P0WUN5,A0A0P0WX24,A0A0P0XEI9 A0A0P0WUN5_ORYSJ,A0A0P0WX24_ORYSJ,A0A0P0XEI9_ORYSJ Os06g0218200 OSNPB_060218200,Os06g0484950 OSNPB_060484950,Os08g0326300 OSNPB_080326300 ENOG411E9WX ABCE1 Q9LID6 AB1E_ARATH ABC transporter E family member 1 (ABC transporter ABCE.1) (AtABCE1) (RNase L inhibitor-like protein 1) (AtRLI1) (AthaRLI1) 68161 ABC transporter E family member 1 (ABC transporter ABCE.1) (AtABCE1) (RNase L inhibitor-like protein 1) (AtRLI1) (AthaRLI1) cell [GO:0005623]; membrane [GO:0016020]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; iron ion binding [GO:0005506]; ribosomal small subunit binding [GO:0043024]; transporter activity [GO:0005215]; ribosomal subunit export from nucleus [GO:0000054]; translational initiation [GO:0006413]; translational termination [GO:0006415] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:15383904}. locus:2091506; AT3G13640 Possible Fer4-like domain in RNase L inhibitor RLI NA NA NA NA NA NA NA ENOG411E9WG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endotransglucosylase hydrolase protein NA NA NA NA NA NA NA ENOG411E9WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3508) NA NA NA NA NA NA NA ENOG411E9WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E9WB Q8W591,O22266,A0A1P8B328 Q8W591_ARATH,O22266_ARATH,A0A1P8B328_ARATH At3g62570/T12C14_270 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At2g47440),Tetratricopeptide repeat (TPR)-like superfamily protein 61963,58651,57214 At3g62570/T12C14_270 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At2g47440),Tetratricopeptide repeat (TPR)-like superfamily protein vacuole [GO:0005773] locus:2096114;,locus:2062052; AT3G62570,AT2G47440 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411E9WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os04g0197100 protein,Os03g0284650 protein,Os04g0199600 protein A3ARA6,A0A0P0VW99,A0A0P0W7P3 A3ARA6_ORYSJ,A0A0P0VW99_ORYSJ,A0A0P0W7P3_ORYSJ Os04g0197100 OsJ_13904 OSNPB_040197100,Os03g0284650 OSNPB_030284650,Os04g0199600 OSNPB_040199600 ENOG411E9WN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411E9WM A8MSF0,F4HXI8 A8MSF0_ARATH,F4HXI8_ARATH Polyketide cyclase/dehydrase and lipid transport superfamily protein 22295,24585 Polyketide cyclase/dehydrase and lipid transport superfamily protein locus:2196165; AT1G02470 EXPRESSED DURING 4 anthesis C globular stage petal differentiation and expansion stage NA NA NA NA NA NA NA ENOG411E9WK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411E9WJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E9WH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DR9T SGB1 Q2V4B9,Q9FYG3,A0A1P8ANU5,A0A1P8ANT5,F4HQB5,F4HRU5,A0A1P8AWB0 PLST3_ARATH,PLST2_ARATH,A0A1P8ANU5_ARATH,A0A1P8ANT5_ARATH,F4HQB5_ARATH,F4HRU5_ARATH,A0A1P8AWB0_ARATH Probable plastidic glucose transporter 3,Probable plastidic glucose transporter 2,Major facilitator superfamily protein FUNCTION: May be involved in the efflux of glucose towards the cytosol. {ECO:0000250}. R-ATH-189200;R-ATH-196836;R-ATH-422356;R-ATH-5653890;R-ATH-6798695;R-ATH-8981373; 52441,53127,45713,48010,47729,53274,41823 Probable plastidic glucose transporter 3,Probable plastidic glucose transporter 2,Major facilitator superfamily protein chloroplast membrane [GO:0031969]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; substrate-specific transmembrane transporter activity [GO:0022891]; carbohydrate transport [GO:0008643],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2017899;,locus:2019554; AT1G79820,AT1G67300 Plastidic glucose transporter Os02g0274900 protein (Putative sugar transporter),Os02g0274900 protein (Putative sugar transporter) (cDNA clone:J033073C19, full insert sequence),Os02g0274900 protein (Fragment) Q6K7T0,Q6K7S9,A0A0P0VHM3 Q6K7T0_ORYSJ,Q6K7S9_ORYSJ,A0A0P0VHM3_ORYSJ P0413A11.38-1 P0017G06.8-1 Os02g0274900 OSNPB_020274900,P0413A11.38-2 Os02g0274900 P0017G06.8-2 OSNPB_020274900,Os02g0274900 OSNPB_020274900 ENOG411DR9Z PAP23 Q6TPH1,A0A1P8B627 PPA23_ARATH,A0A1P8B627_ARATH Purple acid phosphatase 23 (EC 3.1.3.2),Purple acid phosphatase (EC 3.1.3.2) FUNCTION: Acid phosphatase activity with ATP, ADP, dATP, pyrophosphate, polyphosphate, phosphoserine and phosphothreonine. Low or no activity with phosphotyrosine, AMP and phytate. {ECO:0000269|PubMed:16244908}. 3.1.3.2; 3.1.3.2 51551,46341 Purple acid phosphatase 23 (EC 3.1.3.2),Purple acid phosphatase (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872],acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] DEVELOPMENTAL STAGE: First observed in the floral apical meristem (FAP). In flowers, observed in petals and anthers, particularly in anther filaments. {ECO:0000269|PubMed:16244908}. TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:16244908}. AT4G13700 Purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2) Q6ZCX8 Q6ZCX8_ORYSJ Os08g0280100 OSNPB_080280100 P0026A08.24 ENOG411EM70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain Os02g0471300 protein (Putative monooxygenase),Os02g0561500 protein Q6K7M5,A0A0P0VKJ1 Q6K7M5_ORYSJ,A0A0P0VKJ1_ORYSJ Os02g0471300 Os02g0471300 OsJ_06696 OSNPB_020471300 P0403C01.28,Os02g0561500 OSNPB_020561500 ENOG411EM7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fumarase C C-terminus NA NA NA NA NA NA NA ENOG411EM28 RZ1A Q9LIN3 RZ1A_ARATH Glycine-rich RNA-binding protein RZ1A (AtRZ-1a) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but germination of mutant seeds is strongly delayed under low temperature conditions. {ECO:0000269|PubMed:15941401}. reduced expression of atRZ-1a,no expression of atRZ-1a Germination and seedling growth sensitive to low temperature-H. Kang-2005 FUNCTION: Binds RNA and DNA sequences with a preference to single-stranded nucleic acids. Displays strong affinity to poly(G) and poly(U) sequences. May be involved in tolerance to cold stress. {ECO:0000269|PubMed:15941401}. MISCELLANEOUS: Plants over-expressing RZ1A have enhanced freezing tolerance. {ECO:0000269|PubMed:15941401}. 26923 Glycine-rich RNA-binding protein RZ1A (AtRZ-1a) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; nucleotide binding [GO:0000166]; zinc ion binding [GO:0008270]; response to cold [GO:0009409] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15941401}. locus:2079276; AT3G26420 Zinc knuckle NA NA NA NA NA NA NA ENOG411EHH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RHS Repeat NA NA NA NA NA NA NA ENOG411EFFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0578201 protein,Os02g0577600 protein (Fragment) C7IYR7,A0A0P0VKT1 C7IYR7_ORYSJ,A0A0P0VKT1_ORYSJ Os02g0578201 Os02g0578201 OSNPB_020578201,Os02g0577600 OSNPB_020577600 ENOG411EFFX Q9LJV8 Q9LJV8_ARATH Glycine-rich protein 34452 Glycine-rich protein locus:2094682; AT3G29075 glycine-rich protein NA NA NA NA NA NA NA ENOG411EFFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os05g0461200 protein A0A0P0WND1 A0A0P0WND1_ORYSJ Os05g0461200 OSNPB_050461200 ENOG411EFFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os03g0620137 protein,Os02g0163000 protein,Os05g0552451 protein A0A0P0W0T8,A0A0N7KER2,A0A0P0WQA3 A0A0P0W0T8_ORYSJ,A0A0N7KER2_ORYSJ,A0A0P0WQA3_ORYSJ Os03g0620137 OSNPB_030620137,Os02g0163000 OSNPB_020163000,Os05g0552451 OSNPB_050552451 ENOG411EFFQ O22713 O22713_ARATH F8A5.27 protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) 17941 F8A5.27 protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) enzyme inhibitor activity [GO:0004857] locus:2036571; AT1G60760 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EFFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0495075 protein (Fragment),Os03g0328600 protein (Fragment) A0A0P0WC17,A0A0P0VXV3 A0A0P0WC17_ORYSJ,A0A0P0VXV3_ORYSJ Os04g0495075 OSNPB_040495075,Os03g0328600 OSNPB_030328600 ENOG411EFFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: FBD-associated F-box protein NA NA NA NA NA NA NA ENOG411EFFU O48838 O48838_ARATH At2g32790 (E2, ubiquitin-conjugating enzyme, putative) (Ubiquitin-conjugating enzyme family protein) 20390 At2g32790 (E2, ubiquitin-conjugating enzyme, putative) (Ubiquitin-conjugating enzyme family protein) locus:2046377; AT2G32790 Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EFFT Q9M9L9,A0A1I9LME4,F4HV99 Q9M9L9_ARATH,A0A1I9LME4_ARATH,F4HV99_ARATH F10A16.6 protein,Uncharacterized protein Male gametophyte defective; Embryo defective (inferred)-S. McCormick-2009 46934,45227,36119 F10A16.6 protein,Uncharacterized protein pollen tube development [GO:0048868] locus:2074439;,locus:2020013; AT3G05770,AT1G54300 NA NA NA NA NA NA NA NA ENOG411EFFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EFFJ B3H5H4,F4JW86,B3H590 B3H5H4_ARATH,F4JW86_ARATH,B3H590_ARATH Plant self-incompatibility protein S1 family 15233,16715,14601 Plant self-incompatibility protein S1 family locus:4515103141;,locus:2179974;,locus:4515103140; AT3G27331,AT5G04350,AT3G27329 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EFFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA source UniProtKB NA NA NA NA NA NA NA ENOG411EFFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Cleaves proteins imported into the mitochondrion to their mature size. While most mitochondrial precursor proteins are processed to the mature form in one step by mitochondrial processing peptidase (MPP) the sequential cleavage by MIP of an octapeptide after initial processing by MPP is a required step for a subgroup of nuclear-encoded precursor proteins destined for the matrix or the inner membrane NA NA NA NA NA NA NA ENOG411EFFM BIC2 Q9M280 BIC2_ARATH Protein BIC2 (BLUE-LIGHT INHIBITOR OF CRYPTOCHROMES 2) DISRUPTION PHENOTYPE: No visible phenotype. Bic1 and bic2 double mutants have a blue light-hypersensitive short-hypocotyl phenotype and an increased anthocyanin accumulation when grown in continuous blue light. {ECO:0000269|PubMed:27846570}. FUNCTION: Regulates the blue-light dependent dimerization of CRY2 and formation of photobodies. Inhibits CRY phosphorylation. {ECO:0000269|PubMed:27846570}. 12696 Protein BIC2 (BLUE-LIGHT INHIBITOR OF CRYPTOCHROMES 2) nucleus [GO:0005634]; response to karrikin [GO:0080167] locus:2100167; AT3G44450 NA NA NA NA NA NA NA NA ENOG411EFFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Exonuclease 3'-5' domain containing 2 NA NA NA NA NA NA NA ENOG411EFFB Q9SUX3 Q9SUX3_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Extensin like protein) 14056 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Extensin like protein) locus:2127560; AT4G22460 Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EFFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Potassium voltage-gated channel subfamily H (Eag-related) member NA NA NA NA NA NA NA ENOG411EFFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Seed allergenic protein RA5 RA14 RA17 precursor expressed Seed allergenic protein RAG1 (Seed allergenic protein RA17) (allergen Ory s aA_TI),Seed allergenic protein RAG2 (Seed allergenic protein RA14) (allergen Ory s aA_TI),Seed allergenic protein RA5 (allergen Ory s aA_TI),Alpha-amylase/trypsin inhibitor RA16 (Allergen RA16) (allergen Ory s aA_TI),Allergen RA5B (Os07g0215500 protein) (cDNA, clone: J075198N21, full insert sequence),Allergenic protein (Os07g0213800 protein) (Putative allergenic protein) (cDNA clone:002-125-C09, full insert sequence),Os07g0213700 protein Q01883,Q01882,Q01881,Q8H4L8,Q0D7S0,Q8H4M4,A0A0P0X3X4 RAG1_ORYSJ,RAG2_ORYSJ,RA05_ORYSJ,RA16_ORYSJ,Q0D7S0_ORYSJ,Q8H4M4_ORYSJ,A0A0P0X3X4_ORYSJ RAG1 RA17 Os07g0214100 LOC_Os07g11360 OJ1116_C08.112,RAG2 RA14 Os07g0214300 LOC_Os07g11380 OJ1116_C08.114 OsJ_23551,RA5 Os07g0215500 LOC_Os07g11510,RA16 Os07g0214600 OJ1116_C08.118,Os07g0215500 Os07g0215500 OsJ_23554 OSNPB_070215500,OJ1116_C08.108 Os07g0213800 OsJ_23547 OSNPB_070213800,Os07g0213700 OSNPB_070213700 FUNCTION: Seed storage protein. {ECO:0000305}. ENOG411EFF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCT NA NA NA NA NA NA NA ENOG411EFF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FN3 NA NA NA NA NA NA NA ENOG411EFF1 T11I11.40 Q9SW54 Q9SW54_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34800) (Uncharacterized protein T11I11.40) 10524 SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34800) (Uncharacterized protein T11I11.40) response to auxin [GO:0009733] locus:2116885; AT4G34800 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetrapyrrole (Corrin/Porphyrin) Methylases NA NA NA NA NA NA NA ENOG411EFF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0876200 protein Q0JH97 Q0JH97_ORYSJ Os01g0876200 Os01g0876200 OSNPB_010876200 ENOG411E432 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family Expressed protein (Os03g0830200 protein),Os03g0830500 protein (PGP224, putative, expressed) (cDNA clone:J023082F07, full insert sequence),Os03g0830400 protein (Os03g0830401 protein) (PGPS/D12, putative, expressed),Os03g0830300 protein,Os03g0829900 protein Q850Y6,Q850Y9,Q850Y8,Q850Y7,Q850Y3 Q850Y6_ORYSJ,Q850Y9_ORYSJ,Q850Y8_ORYSJ,Q850Y7_ORYSJ,Q850Y3_ORYSJ OSJNBb0027B08.19 LOC_Os03g61470 Os03g0830200 OsJ_13218 OSJNBa0078D06.8 OSNPB_030830200,OSJNBb0027B08.16 LOC_Os03g61500 Os03g0830500 OsJ_13220 OSJNBa0078D06.11 OSNPB_030830500,OSJNBb0027B08.17 Os03g0830400 LOC_Os03g61490 Os03g0830401 OSJNBa0078D06.10 OSNPB_030830400,OSJNBb0027B08.18 Os03g0830300 LOC_Os03g61480 OSJNBa0078D06.9 OSNPB_030830300,OSJNBb0027B08.22 Os03g0829900 LOC_Os03g61440 OsJ_13217 OSJNBa0078D06.5 OSNPB_030829900 ENOG411E43M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E43K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant zinc cluster domain Os02g0462800 protein (WRKY transcription factor) (WRKY transcription factor 42Peronospora parasitica revealed occasional plant cell death-associated autofluorescence.,Mutant displays a loss of RPP5 resistance.,Under microscopic analysis it was estimated that the hypersensitive response was disable by ~95% of pathogen inoculation sites in the mutant.,Examination under UV light of leaves inoculated with Peronospora parasitica did not reveal occasional plant cell death-associated autofluorescence.,The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance. Susceptible to downy mildew -E. Holub-2002 FUNCTION: Functions in R gene-mediated resistance, but participates in a lower extent than SGT1B to RPP5-mediated resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. {ECO:0000269|PubMed:16619029}.,FUNCTION: Involved in plant innate immunity. Is essential for resistance conferred by multiple R genes recognizing different oomycete pathogen isolates like avirulent H.parasitica (downy mildew). Contributes additively with RAR1 to RPP5-dependent resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Functions as negative regulator of RPS5 accumulation by assisting its degradation. May be involved in heat shock response by associating with HSC70-1 chaperone. Required for the SCF(TIR1)-mediated degradation of Aux/IAA proteins, but maybe not for SCF(TIR1) assembly or binding to its Aux/IAA substrates. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. Required for the coronatine/jasmonic acid-mediated signal transduction pathway. {ECO:0000269|PubMed:11847308, ECO:0000269|PubMed:12034892, ECO:0000269|PubMed:12782725, ECO:0000269|PubMed:15976272, ECO:0000269|PubMed:16619029, ECO:0000269|PubMed:18065690, ECO:0000269|PubMed:19304739, ECO:0000269|PubMed:20854394}. R-ATH-844456; 39225,39762 Protein SGT1 homolog A (AtSGT1a) (Suppressor of G2 allele of SKP1 homolog A),Protein SGT1 homolog B (AtSGT1b) (Protein ENHANCED DOWNY MILDEW 1) (Protein ENHANCER OF TIR1-1 AUXIN RESISTANCE 3) (Suppressor of G2 allele of SKP1 homolog B) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; cellular response to auxin stimulus [GO:0071365]; defense response [GO:0006952]; innate immune response [GO:0045087]; regulation of defense response to fungus, incompatible interaction [GO:2000072]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; auxin-activated signaling pathway [GO:0009734]; defense response to fungus [GO:0050832]; innate immune response [GO:0045087]; jasmonic acid mediated signaling pathway [GO:0009867]; negative regulation of seed germination [GO:0010187]; protein catabolic process [GO:0030163]; regulation of defense response to fungus, incompatible interaction [GO:2000072]; response to heat [GO:0009408]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2128404;,locus:2128278; AT4G23570,AT4G11260 suppressor of G2 allele of SKP1 Protein SGT1 homolog (OsSGT1) (Suppressor of G2 allele of SKP1 homolog),Os01g0624500 protein (Fragment) Q0JL44,A0A0P0V5J2 SGT1_ORYSJ,A0A0P0V5J2_ORYSJ SGT1 Os01g0624500 LOC_Os01g43540 OsJ_02663,Os01g0624500 OSNPB_010624500 FUNCTION: Involved in basal disease resistance to bacterial blight (X.oryzae). May act as positive regulator of basal defense. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. {ECO:0000269|PubMed:18257679}. ENOG411DPQB FLD,LDL1 Q9CAE3,Q8VXV7,A0A1I9LNW7,A0A1I9LNW6 FLD_ARATH,LDL1_ARATH,A0A1I9LNW7_ARATH,A0A1I9LNW6_ARATH Protein FLOWERING LOCUS D (EC 1.-.-.-) (Protein SUPPRESSOR OF OVEREXPRESSED FCA 1),Lysine-specific histone demethylase 1 homolog 1 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 1) (Protein LSD1-LIKE 1),Protein FLOWERING locus D-like protein Late flowering. Flowers later than flc3 single mutant but earlier than ldl1/ldl2 double mutant.,Roots are longer than WT. Late flowering-R. Amasino-2007 FUNCTION: Probable histone demethylase that promotes flowering independently of the photoperiod and vernalization pathways by repressing FLOWERING LOCUS C (FLC), a floral repressor that blocks the transition from vegetative to reproductive development. Probably mediates histone H3 'Lys-4' demethylation at FLC locus. Seems to act in partial redundancy with LDL1 and LDL2 to repress FLC expression. Required for histone H4 deacetylation of FLC locus. May be a component of the histone deacetylase complex. {ECO:0000269|PubMed:14593187, ECO:0000269|PubMed:17921315, ECO:0000269|PubMed:17996704}.,FUNCTION: Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin of the floral repressor FLOWERING LOCUS C (FLC) and the sporophytically silenced floral repressor FWA (PubMed:17921315). Seems to act in partial redundancy with FLOWERING LOCUS D (FLD) to repress FLC expression (PubMed:17921315). Required for cytosine methylation of FWA (PubMed:17921315). Controls primary seed dormancy by regulating DOG1 and abscisic acid signaling-related genes (PubMed:25852712). {ECO:0000269|PubMed:17921315, ECO:0000269|PubMed:25852712}. ARA:AT3G10390-MONOMER;,ARA:AT1G62830-MONOMER; R-ATH-3214842; 1.14.11.B1; 1.-.-.- 86037,93312,100404,101515 Protein FLOWERING LOCUS D (EC 1.-.-.-) (Protein SUPPRESSOR OF OVEREXPRESSED FCA 1),Lysine-specific histone demethylase 1 homolog 1 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 1) (Protein LSD1-LIKE 1),Protein FLOWERING locus D-like protein DNA binding [GO:0003677]; oxidoreductase activity [GO:0016491]; histone deacetylation [GO:0016575]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; DNA binding [GO:0003677]; oxidoreductase activity [GO:0016491]; histone deacetylation [GO:0016575]; histone H3-K4 methylation [GO:0051568]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in the shoot and root apical regions of young seedlings. Expressed in cotyledons and inflorescences. {ECO:0000269|PubMed:17921315}. locus:2075870;,locus:2026187; AT3G10390,AT1G62830 lysine-specific histone demethylase 1 Lysine-specific histone demethylase 1 homolog 3 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 3) (Protein FLOWERING LOCUS D-LIKE) (Protein LSD1-LIKE 3),Lysine-specific histone demethylase 1 homolog 1 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 1) (Protein LSD1-LIKE 1),Os04g0560300 protein,Os06g0306101 protein Q7XUR2,Q6Z690,A0A0P0WDM4,A0A0N7KLZ7 LDL3_ORYSJ,LDL1_ORYSJ,A0A0P0WDM4_ORYSJ,A0A0N7KLZ7_ORYSJ Os04g0560300 LOC_Os04g47270 OSJNBa0084K11.6,Os02g0755200 LOC_Os02g51880 P0627E03.23,Os04g0560300 OSNPB_040560300,Os06g0306101 OSNPB_060306101 FUNCTION: Probable histone demethylase. {ECO:0000250}. ENOG411DPQW ETFB,ETFBETA Q9LSW8,A0A1R7T3K7 ETFB_ARATH,A0A1R7T3K7_ARATH Electron transfer flavoprotein subunit beta, mitochondrial (Beta-ETF),Electron transfer flavoprotein beta DISRUPTION PHENOTYPE: Reduced plant viability on extended exposure to darkness and a reduced reproductive performance under normal growth conditions. {ECO:0000269|PubMed:16923016}. Accelerated senescence under constant dark conditions. Reduced fertility-C. Leaver-2006 FUNCTION: The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). Involved in leucine catabolism and in phytol degradation. {ECO:0000250, ECO:0000269|PubMed:16923016}. ARA:AT5G43430-MONOMER; R-ATH-611105; 27400,31015 Electron transfer flavoprotein subunit beta, mitochondrial (Beta-ETF),Electron transfer flavoprotein beta cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; electron carrier activity [GO:0009055]; chlorophyll catabolic process [GO:0015996]; leucine catabolic process [GO:0006552]; oxidation-reduction process [GO:0055114],electron carrier activity [GO:0009055] locus:2176446; AT5G43430 Electron transfer flavoprotein subunit beta Electron transfer flavoprotein subunit beta, mitochondrial (Beta-ETF) Q7F9U3 ETFB_ORYSJ ETFB Os04g0182800 LOC_Os04g10400 OsJ_013398 OSJNBb0006L01.5 FUNCTION: The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). {ECO:0000250}. ENOG411DPQV UTR5B,UTR5 Q6NMB6,Q6NM25,A0A1I9LP14 UTR5B_ARATH,UTR5_ARATH,A0A1I9LP14_ARATH UDP-galactose/UDP-glucose transporter 5B (AtUTr5B),UDP-galactose/UDP-glucose transporter 5 (AtUTr5),UDP-galactose transporter 5 FUNCTION: Sugar transporter involved in the transport of nucleotide-sugars from cytoplasm into the Golgi and/or the endoplasmic reticulum. {ECO:0000250}. R-ATH-174362;R-ATH-727802; 38218,38860,32161 UDP-galactose/UDP-glucose transporter 5B (AtUTr5B),UDP-galactose/UDP-glucose transporter 5 (AtUTr5),UDP-galactose transporter 5 integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of Golgi membrane [GO:0030173]; 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity [GO:0046964]; antiporter activity [GO:0015297]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2174289;,locus:2075311; AT5G59740,AT3G46180 adenosine 3'-phospho 5'-phosphosulfate transporter Os05g0115700 protein (Unknow protein) (cDNA clone:J023065F02, full insert sequence) Q65XA4 Q65XA4_ORYSJ Os05g0115700 Os05g0115700 OJ1654_B10.14 OsJ_16889 OSNPB_050115700 P0496H07.4 ENOG411DPQU CER1 F4HVY0,A0A1P8AN63,A0A1P8AN85 CER1_ARATH,A0A1P8AN63_ARATH,A0A1P8AN85_ARATH Protein ECERIFERUM 1,Fatty acid hydroxylase superfamily DISRUPTION PHENOTYPE: Glossy stem and fruit and reduced fertility due to the inability of the pollen grains to rehydrate on the stigma surface. Disappearance of the wax crystals. Decreased C29, C31 and C33 alkane contents. Increased susceptibility to soil water deficit. {ECO:0000269|PubMed:21386033, ECO:0000269|PubMed:8718622}. Glossy inflorescence stems and siliques; Male sterile in low humidity-A. Pereira-1995 FUNCTION: Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes. Core component of a very-long-chain alkane synthesis complex. Involved in epicuticular wax biosynthesis and pollen fertility. {ECO:0000269|PubMed:21386033, ECO:0000269|PubMed:22773744, ECO:0000269|PubMed:8718622}. 72406,44430,72750 Protein ECERIFERUM 1,Fatty acid hydroxylase superfamily endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; alkane biosynthetic process [GO:0043447]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; lipid biosynthetic process [GO:0008610]; lipid metabolic process [GO:0006629]; response to water deprivation [GO:0009414]; wax biosynthetic process [GO:0010025],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; lipid biosynthetic process [GO:0008610] TISSUE SPECIFICITY: Expressed in seedlings, stems, leaves, flowers, fruits and siliques. Not detected in roots, pollen and seeds. Expressed in trichomes, cotyledons, shoot apical meristem and leaf primordia. Preferentially associated with young leaves rather than mature leaves. Expressed in the epidermis of the stem and caulines leaves, in the carpels and the sepals. {ECO:0000269|PubMed:21386033, ECO:0000269|PubMed:8718622}. locus:2827068; AT1G02205 WAX2 C-terminal domain CER1 protein, putative, expressed (Os10g0471100 protein) (Putative CER1),CER1 protein, putative, expressed (Os10g0471100 protein) (cDNA clone:J023068L20, full insert sequence) Q7XDI3,Q109K0 Q7XDI3_ORYSJ,Q109K0_ORYSJ Os10g0471100 LOC_Os10g33250 Os10g0471100 OsJ_31858 OSJNBa0079L16.17 OSNPB_100471100,Os10g0471100 LOC_Os10g33250 OSNPB_100471100 ENOG411DPQT AL3,AL5 Q9M2B4,Q5XEM9,A0A1P8BEU7 ALFL3_ARATH,ALFL5_ARATH,A0A1P8BEU7_ARATH PHD finger protein ALFIN-LIKE 3 (Protein AL3),PHD finger protein ALFIN-LIKE 5 (Protein AL5),Alfin-like 5 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. 28215,29592,24972 PHD finger protein ALFIN-LIKE 3 (Protein AL3),PHD finger protein ALFIN-LIKE 5 (Protein AL5),Alfin-like 5 nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; transcription corepressor activity [GO:0003714]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],histone binding [GO:0042393]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19154204}. locus:2099321;,locus:2149867; AT3G42790,AT5G20510 Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3) which mark transcription start sites of virtually all active genes (By similarity) NA NA NA NA NA NA NA ENOG411DPQR Q9SL94,A0A1P8AX29 Q9SL94_ARATH,A0A1P8AX29_ARATH At2g25690 (DUF581 family protein, putative (DUF581)) (Uncharacterized protein At2g25690),DUF581 family protein, putative (DUF581) 36092,33620 At2g25690 (DUF581 family protein, putative (DUF581)) (Uncharacterized protein At2g25690),DUF581 family protein, putative (DUF581) locus:2050271; AT2G25690 Protein of unknown function (DUF581) Os01g0593200 protein (cDNA clone:J033137D23, full insert sequence) Q5ZC42 Q5ZC42_ORYSJ Os01g0593200 Os01g0593200 OsJ_02442 OSNPB_010593200 P0451D05.2 P0710A02.35 ENOG411DPQQ COL13 O82256,A0A1P8B0C5,F4IM60 COL13_ARATH,A0A1P8B0C5_ARATH,F4IM60_ARATH Zinc finger protein CONSTANS-LIKE 13,B-box type zinc finger protein with CCT domain-containing protein 37510,33880,26131 Zinc finger protein CONSTANS-LIKE 13,B-box type zinc finger protein with CCT domain-containing protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355],intracellular [GO:0005622]; zinc ion binding [GO:0008270] locus:2043288; AT2G47890 zinc finger protein Os07g0667300 protein (cDNA clone:J013022K23, full insert sequence),CCT motif family protein, expressed (Os03g0351100 protein) (Zinc finger protein) (cDNA clone:J013111C11, full insert sequence) (cDNA clone:J033067J11, full insert sequence) Q0D3T5,O82112 Q0D3T5_ORYSJ,O82112_ORYSJ Os07g0667300 Os07g0667300 OSNPB_070667300,LOC_Os03g22770 Os03g0351100 OSNPB_030351100 ENOG411DPQP LIS O22212,Q9SIB8 PRP4L_ARATH,Q9SIB8_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein (Protein EMBRYO DEFECTIVE 2776) (Protein LACHESIS),Putative U4/U6 small nuclear ribonucleoprotein (Transducin/WD40 repeat-like superfamily protein) DISRUPTION PHENOTYPE: Gametophytic lethality due to female gametophyte defect, when homozygous. {ECO:0000269|PubMed:17326723}. Forms supernumerary egg cells. Homozygous line is lethal. Male and female gametophyte defective; Embryo defective-U. Grossniklaus-2007 FUNCTION: Participates in pre-mRNA splicing. Part of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome (By similarity). Essential for reproduction. In female gametophyte, is necessary for the egg cell and central cell fate determination and hence reproductive success. Involved in a mechanism that prevents accessory cells from adopting gametic cell fate (PubMed:17326723). Modulates egg cell signaling center that regulates the development of all female gametophytic cells (PubMed:22190635). {ECO:0000250|UniProtKB:O43172, ECO:0000269|PubMed:17326723, ECO:0000269|PubMed:22190635}. R-ATH-72163; 61842,31104 U4/U6 small nuclear ribonucleoprotein PRP4-like protein (Protein EMBRYO DEFECTIVE 2776) (Protein LACHESIS),Putative U4/U6 small nuclear ribonucleoprotein (Transducin/WD40 repeat-like superfamily protein) nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U4 snRNA binding [GO:0030621]; U6 snRNA binding [GO:0017070]; cell fate determination [GO:0001709]; cell-cell signaling [GO:0007267]; embryo sac development [GO:0009553]; embryo sac egg cell differentiation [GO:0009560]; mRNA splicing, via spliceosome [GO:0000398],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; viral nucleocapsid [GO:0019013]; U4 snRNA binding [GO:0030621]; U6 snRNA binding [GO:0017070]; mRNA splicing, via spliceosome [GO:0000398] DEVELOPMENTAL STAGE: During female gametophyte development, prerentially expressed in the gametic cells. {ECO:0000269|PubMed:17326723, ECO:0000269|PubMed:22190635}. locus:2060560;,locus:2063349; AT2G41500,AT2G05720 U4 U6 small nuclear ribonucleoprotein Os03g0355200 protein (Os03g0355400 protein) (U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed) Q10LA2 Q10LA2_ORYSJ Os03g0355400 Os03g0355200 LOC_Os03g23909 LOC_Os03g23929 OSNPB_030355200 OSNPB_030355400 ENOG411DPQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphofructokinase Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha (PFP) (6-phosphofructokinase, pyrophosphate dependent) (PPi-PFK) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) Q84QT9 Q84QT9_ORYSJ P0410E11.122 PFP-ALPHA Os08g0345700 OsJ_26990 OSNPB_080345700 FUNCTION: Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. {ECO:0000256|HAMAP-Rule:MF_03185}. ENOG411DPQ6 F11C1_110,MXA21.5 Q9SND9,Q9SNE0,Q9FH98,Q6DBD5,F4J0K7,A0A1I9LM25,F4J0K8 Y3028_ARATH,Q9SNE0_ARATH,Q9FH98_ARATH,Q6DBD5_ARATH,F4J0K7_ARATH,A0A1I9LM25_ARATH,F4J0K8_ARATH Uncharacterized acetyltransferase At3g50280 (EC 2.3.1.-),Anthranilate N-hydroxycinnamoyl/benzoyltransferase-like protein (HXXXD-type acyl-transferase family protein),Anthranilate N-hydroxycinnamoyl/benzoyltransferase-like protein (HXXXD-type acyl-transferase family protein) (Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase),At5g38130 (HXXXD-type acyl-transferase family protein),HXXXD-type acyl-transferase family protein ARA:AT3G50280-MONOMER;,ARA:AT3G50270-MONOMER;,ARA:AT5G67150-MONOMER;,ARA:AT5G38130-MONOMER; 2.3.1.- 49960,49806,49940,52095,30743,35205,50249 Uncharacterized acetyltransferase At3g50280 (EC 2.3.1.-),Anthranilate N-hydroxycinnamoyl/benzoyltransferase-like protein (HXXXD-type acyl-transferase family protein),Anthranilate N-hydroxycinnamoyl/benzoyltransferase-like protein (HXXXD-type acyl-transferase family protein) (Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase),At5g38130 (HXXXD-type acyl-transferase family protein),HXXXD-type acyl-transferase family protein transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],cytosol [GO:0005829]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2074790;,locus:2074775;,locus:2155558;,locus:2176672;,locus:2074805;,locus:2074820; AT3G50280,AT3G50270,AT5G67150,AT5G38130,AT3G50290,AT3G50300 transferase family Os08g0111800 protein (Putative AER),Os08g0111300 protein (Putative AER) (cDNA clone:002-173-B07, full insert sequence),OSJNBa0069D17.14 protein (Os04g0374601 protein),Os08g0111500 protein,Os08g0112300 protein (Fragment),Os04g0374400 protein Q6ZCD2,Q6ZC51,Q7XVL2,A0A0P0XAW5,A0A0P0XB42,A0A0N7KIX6 Q6ZCD2_ORYSJ,Q6ZC51_ORYSJ,Q7XVL2_ORYSJ,A0A0P0XAW5_ORYSJ,A0A0P0XB42_ORYSJ,A0A0N7KIX6_ORYSJ Os08g0111800 OsJ_25791 OSNPB_080111800 P0498H04.14,Os08g0111300 Os08g0111300 OsJ_25790 OSNPB_080111300 P0007D08.43 P0498H04.4,OSJNBa0069D17.14 Os04g0374601 OSNPB_040374601,Os08g0111500 OSNPB_080111500,Os08g0112300 OSNPB_080112300,Os04g0374400 OSNPB_040374400 ENOG411DPQ5 NOA1 Q66GP9 NOA1_ARATH NO-associated protein 1, chloroplastic/mitochondrial (AtNOA1) (Dubious mitochondrial nitric oxide synthase 1) (AtNOS1) (EC 1.14.13.39) (GTPase NOA1) (Protein RESISTANT TO INHIBITION BY FOSMIDOMYCIN 1) DISRUPTION PHENOTYPE: Pale seedlings with a delayed development and greening of true leaves resulting in small plants with a characteristic virescent phenotype of pale young leaves but green mature leaves. Loss of NOS activity in mitochondria. Reduced extracellular calmodulin- (ExtCaM-) triggered and salicylic acid (SA)-mediated increase in NO levels and subsequent H(2)O(2)-dependent stomatal closure. Faster dark-induced senescence in leaves. Higher accumulation of hydrogen peroxide, superoxide anion, oxidized lipid, and oxidized protein. Increased hypersensitivity to salt stress and methyl viologen (MV) treatment. Enhanced accumulation of Na(+) but reduced accumulation of K(+) when exposed to NaCl leading to an enhanced sensitivity to salt. Post-transcriptional up-regulation of the methylerythritol phosphate (MEP) pathway. Enhanced resistance to fosmidomycin (FSM). Disturbed chlorophyll-a fluorescence induction in response to temperature variation, accompanied with altered polyamines accumulation. {ECO:0000269|PubMed:16272429, ECO:0000269|PubMed:16690168, ECO:0000269|PubMed:17351048, ECO:0000269|PubMed:18469163, ECO:0000269|PubMed:19321706, ECO:0000269|PubMed:20657186, ECO:0000269|PubMed:21392840}. rif1-3 mutants are pale green with delayed leaf development. They are resistant to fosmidomycin an inhibitor of the isoprenoid biosynthetic enzyme DXP,Not impaired in NO biosynthesis in response to exogenous H2O2 compared to wild-type.,Reduced nitric oxide synthase (NOS) production in leaves and root tips; impaired organ growth: yellowish first true leaves reduced root and inflorescence growth reduced fertility; defective abscisic acid- induced stomatal movements; kanamycin resistant,Significantly impaired in NO biosynthesis in response to ABA compared to wild-type.,Stomatal aperture not affected by treatment with sodium nitroprusside (SNP).,rif1-2 mutants are pale green with delayed leaf development. They are resistant to fosmidomycin an inhibitor of the isoprenoid biosynthetic enzyme DXR,sensitive to ozone (O3),rif1-1 mutants are pale green with delayed leaf development. They have a strong resistance to fosmidomycin (FSM) an inhibitor of the isoprenoid biosynthetic enzyme DXR. The reduced rate of degradation of DXS and DXR in rif1-1 mutants leads to a higher accumulation of these two MEP biosynthetic enzymes. Though RIF1 was originally believed to be an NO-synthase treatment with an NO donor does not rescue the DXR over-accumulation phenotype implying that this is not an NO-dependent phenotype. There is a reduction in the level of the large subunit of Rubisco and two other plastid-encoded proteins in the rif1-1 mutant however levels of the plastid-encoded ClpP1 protease are elevated in rif1-1 mutants compared to wild type seedlings. A plastid-targeted YqeH-GFP construct can rescue the growth pigmentation and FSM-resistance phenotypes of rif1-1. YqeH is a GTPase implicated in ribosomal biogenesis in bacteria. Pale green cotyledons; Delayed growth; Young leaves are pale; Resistant to fosmidomycin (inhibitor of isoprenoid biosynthesis)-M. Rodriguez-Concepcion-2008 FUNCTION: Exhibits cGTPase activity; binds and hydrolyzes specifically GTP (PubMed:18801746). May participate in ribosome assembly and stability and thus regulates protein synthesis in chloroplasts. The GTPase activity requires MgCl(2)and the presence of either KCl or (NH(4))(2)SO(4). Involved in the post-transcriptional regulation of the methylerythritol phosphate (MEP) pathway. Involved in chlorophyll-a fluorescence regulation. {ECO:0000269|PubMed:18801746}.; FUNCTION: May mediate the production or accumulation of nitric oxide (NO) which is a messenger molecule involved in hormonal signaling and defense responses in plant (PubMed:14526079, PubMed:16272429, PubMed:16690168 and PubMed:17351048). Acts as an antisenescence agent. Plays a crucial role in both extracellular calmodulin (ExtCaM)-triggered and salicylic acid (SA)-mediated H(2)O(2)-dependent stomatal closure. ARA:AT3G47450-MONOMER; Biosynthesis of secondary metabolites (01110),Arginine and proline metabolism (00330),Plant-pathogen interaction (04626),Metabolic pathways (01100) 1.14.13.39 61957 NO-associated protein 1, chloroplastic/mitochondrial (AtNOA1) (Dubious mitochondrial nitric oxide synthase 1) (AtNOS1) (EC 1.14.13.39) (GTPase NOA1) (Protein RESISTANT TO INHIBITION BY FOSMIDOMYCIN 1) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; oxidoreductase activity [GO:0016491]; leaf development [GO:0048366]; nitric oxide biosynthetic process [GO:0006809]; plastid organization [GO:0009657]; regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0010322]; regulation of protein metabolic process [GO:0051246]; response to oxidative stress [GO:0006979]; response to ozone [GO:0010193]; response to salt stress [GO:0009651]; ribosome biogenesis [GO:0042254]; thylakoid membrane organization [GO:0010027] TISSUE SPECIFICITY: Expressed in aleurone layer and the embryo. {ECO:0000269|PubMed:17220360}. locus:2099520; AT3G47450 Nitric oxide synthase Putative nitric oxide synthase (EC 1.14.13.39),Os02g0104700 protein Q6YPG5,A0A0P0VDT6 NOS_ORYSJ,A0A0P0VDT6_ORYSJ Os02g0104700 LOC_Os02g01440 OJ1212_C06.17 OJA1212_C06.18,Os02g0104700 OSNPB_020104700 FUNCTION: Produces nitric oxide (NO) which is a messenger molecule involved in hormonal signaling and defense responses in plant. {ECO:0000250}. ENOG411DPQ4 RH44,RH21 Q9FZ92,P93008,A0A1P8ANU3 RH44_ARATH,RH21_ARATH,A0A1P8ANU3_ARATH Putative DEAD-box ATP-dependent RNA helicase 44 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase-like protein FUNCTION: ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity). {ECO:0000250}. R-ATH-72163;R-ATH-72165; 3.6.4.13 72674,85277,13351 Putative DEAD-box ATP-dependent RNA helicase 44 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase-like protein catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; U5 snRNP [GO:0005682]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501]; RNA splicing, via transesterification reactions [GO:0000375],catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; U5 snRNP [GO:0005682]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA secondary structure unwinding [GO:0010501]; RNA splicing, via transesterification reactions [GO:0000375],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2057640; AT1G28180,AT2G33730 ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.4.13) Q53RK8 RH21_ORYSJ Os03g0708600 LOC_Os03g50090 OsJ_12293 FUNCTION: ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity). {ECO:0000250}. ENOG411DPQ1 COL4 Q940T9 COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 39167 Zinc finger protein CONSTANS-LIKE 4 nucleus [GO:0005634]; zinc ion binding [GO:0008270]; regulation of flower development [GO:0009909]; response to light stimulus [GO:0009416] AT5G24930 Zinc finger protein CONSTANS-LIKE NA NA NA NA NA NA NA ENOG411DPQ0 A0A1I9LM20,A0A1I9LM23,A0A1I9LM21,F4JEH2,A0A1I9LM22 A0A1I9LM20_ARATH,A0A1I9LM23_ARATH,A0A1I9LM21_ARATH,F4JEH2_ARATH,A0A1I9LM22_ARATH Integrator complex subunit 76681,76768,62656,77186,77273 Integrator complex subunit integrator complex [GO:0032039]; snRNA processing [GO:0016180] locus:2079696; AT3G07530 integrator complex subunit NA NA NA NA NA NA NA ENOG411E8X7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: auxin-regulated gene involved in organ size NA NA NA NA NA NA NA ENOG411E8X5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os06g0360600 protein (Fragment) A0A0P0WWF6 A0A0P0WWF6_ORYSJ Os06g0360600 OSNPB_060360600 ENOG411E8X4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8X3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E8X2 Q9T0A3 Q9T0A3_ARATH At4g23880 (Uncharacterized protein AT4g23880) 23303 At4g23880 (Uncharacterized protein AT4g23880) locus:2138171; AT4G23880 NA NA NA NA NA NA NA NA ENOG411E8X1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Acid_phosphat_A NA NA NA NA NA NA NA ENOG411E8X9 MZA15.13 Q9FIQ3 Q9FIQ3_ARATH AIG2-like (Avirulence induced gene) family protein (Uncharacterized protein At5g46720) 19918 AIG2-like (Avirulence induced gene) family protein (Uncharacterized protein At5g46720) locus:2178510; AT5G46720 AIG2-like family NA NA NA NA NA NA NA ENOG411E8X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA metallothionein-like protein Metallothionein-like protein 4A (Class I metallothionein-like protein 4A) (OsMT-I-4a) (OsMT1b),Metallothionein-like protein 4C (Class I metallothionein-like protein 4C) (MT-1-4b) (OsMT-I-4c) (OsMT1c),Metallothionein-like protein 4B (Class I metallothionein-like protein 4B) (OsMT-I-4b),Metallothionein-like protein 1, putative, expressed (Os12g0567800 protein) (cDNA, clone: J100017F03, full insert sequence),Metallothionein-like protein 1, putative, expressed (Os12g0568500 protein) (cDNA, clone: J100020I16, full insert sequence) Q0IMG5,Q2QNC3,Q2QNE8,Q2QNF2,Q2QNE5 MT4A_ORYSJ,MT4C_ORYSJ,MT4B_ORYSJ,Q2QNF2_ORYSJ,Q2QNE5_ORYSJ MT4A Os12g0570700 LOC_Os12g38270,MT4C Os12g0571100 LOC_Os12g38300 OsJ_36585,MT4B Os12g0568200 LOC_Os12g38051 LOC_Os12g38064,LOC_Os12g38010 Os12g0567800 OsJ_36549 OSNPB_120567800,Os12g0568500 LOC_Os12g38064 OsJ_36555 OSNPB_120568500 FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals. {ECO:0000305}.,FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals (Probable). Acts as reactive oxygen species (ROS) scavenger. Possesses superoxide anion and hydroxyl radical scavenging activities in vitro. Involved in ROS homeostasis during anther and pollen development (PubMed:21297036). {ECO:0000269|PubMed:21297036, ECO:0000305}. MISCELLANEOUS: Plants silencing MT4C show decreased pollen fertility and increased level of superoxide anion. {ECO:0000269|PubMed:21297036}. ENOG411E8XF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0630600 protein) (cDNA, clone: J100033A04, full insert sequence) Q2QLS1 Q2QLS1_ORYSJ LOC_Os12g43510 Os12g0630600 OSNPB_120630600 ENOG411E8XE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8XD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0519700 protein (Os02g0519800 protein) (Fragment) C7IY38 C7IY38_ORYSJ Os02g0519700 Os02g0519800 OSNPB_020519700 ENOG411E8XC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2775) NA NA NA NA NA NA NA ENOG411E8XN CLE25 Q8LFL4 CLE25_ARATH CLAVATA3/ESR (CLE)-related protein 25 [Cleaved into: CLE25p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:16902140}. 8625 CLAVATA3/ESR (CLE)-related protein 25 [Cleaved into: CLE25p] extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in flowers and siliques, and, to a lower extent, in roots, stems, apex, seedlings, leaves and pollen. {ECO:0000269|PubMed:12602871}. locus:504955760; AT3G28455 Inherit from euNOG: clavata3 esr-related 25 NA NA NA NA NA NA NA ENOG411E8XM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8XK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E8XJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: phosphoserine phosphatase activity NA NA NA NA NA NA NA ENOG411E8XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411E8XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA NA NA NA NA NA NA NA ENOG411E8XW PHE2,PHE1 Q7XJK8,O80805 PHE2_ARATH,PHE1_ARATH MADS-box transcription factor PHERES 2 (Agamous-like MADS-box protein AGL38),MADS-box transcription factor PHERES 1 (Agamous-like MADS-box protein AGL37) FUNCTION: Probable transcription factor involved in the development of gametophytes and seeds.,FUNCTION: Probable transcription factor involved in the development of gametophytes and seeds. {ECO:0000269|PubMed:12815071}. MISCELLANEOUS: The PHE2 locus is imprinted in gametophytes. Maternal inherited gene is repressed in female gametophyte, while the paternal inherited gene is expressed in the male gametophyte (pollen tube) and in fertilized seeds. The maternal repression is dependent on MEA, which may modulate the methylation of the maternal locus, and repress its transcription.; MISCELLANEOUS: This protein was called 'Pheres' in memory of one of the murdered sons of the mythological 'Medea', as PHERES2 is repressed by MEDEA.,MISCELLANEOUS: The PHE1 locus is imprinted in gametophytes. Maternal inherited gene is repressed in female gametophyte, while the paternal inherited gene is expressed in the male gametophyte (pollen tube) and in fertilized seeds. The maternal repression is dependent on MEA, FIS2 and FIE proteins, which may modulate the methylation of the maternal locus, and repress its transcription.; MISCELLANEOUS: This protein was called 'Pheres' in memory of one of the murdered sons of the mythological 'Medea', as PHERES1 is repressed by MEDEA. 31658,31953 MADS-box transcription factor PHERES 2 (Agamous-like MADS-box protein AGL38),MADS-box transcription factor PHERES 1 (Agamous-like MADS-box protein AGL37) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; pollen tube [GO:0090406]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Not present in female gametophyte before fertilization. Expressed in pollen tube and at the micropylar pole of pollinated seeds. {ECO:0000269|PubMed:15619622}. TISSUE SPECIFICITY: Male gametophyte, embryo and endosperm. {ECO:0000269|PubMed:12815071}.,TISSUE SPECIFICITY: Male gametophyte, embryo and endosperm. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:15619622}. locus:2206325;,locus:2206280; AT1G65300,AT1G65330 transcription factor NA NA NA NA NA NA NA ENOG411E8XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Eukaryotic family of unknown function (DUF1754) NA NA NA NA NA NA NA ENOG411E8XU Q8LFD5 Y4323_ARATH Uncharacterized protein At4g13230 13064 Uncharacterized protein At4g13230 cytosol [GO:0005829] locus:2119310; AT4G13230 late embryogenesis abundant domain-containing protein NA NA NA NA NA NA NA ENOG411E8XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE101 protein (Os01g0170900 protein) (cDNA clone:002-175-F07, full insert sequence) Q942S9 Q942S9_ORYSJ Os01g0170900 OsCLE101 Os01g0170900 OsJ_00546 OSNPB_010170900 P0583G08.18 ENOG411E8XS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF672 NA NA NA NA NA NA NA ENOG411E8XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8XQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD dependent oxidoreductase NA NA NA NA NA NA NA ENOG411E8XP Q3E7U8 Q3E7U8_ARATH Uncharacterized protein 8538 Uncharacterized protein locus:2146764; AT5G26620 NA NA NA NA NA NA NA NA ENOG411E8XZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8XY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA intron endonuclease catalytic C-terminal domain NA NA NA NA NA NA NA ENOG411E8XX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3F8 Q66GK4,A0A1P8B5C8 Q66GK4_ARATH,A0A1P8B5C8_ARATH At4g15563 (F-box-like protein) (Uncharacterized protein At4g15563),F-box-like protein 18913,22733 At4g15563 (F-box-like protein) (Uncharacterized protein At4g15563),F-box-like protein locus:504955422; AT4G15563 F-box domain containing protein Os05g0372800 protein (cDNA clone:002-138-H10, full insert sequence) Q6I5Q2 Q6I5Q2_ORYSJ Os05g0372800 OSJNBa0025P09.9 OSNPB_050372800 ENOG411E3F9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) Protein G1-like8 Q6ATW6 G1L8_ORYSJ G1L8 Os05g0472000 LOC_Os05g39500 OSJNBa0052E20.15 P0015C02.10 FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. ENOG411E3F2 Q6NLT6,Q8L8X4,A0A1P8AWZ6 Q6NLT6_ARATH,Q8L8X4_ARATH,A0A1P8AWZ6_ARATH At1g34010 (Uncharacterized protein At1g34010),Low affinity potassium transport system protein (Uncharacterized protein At1g22790),Uncharacterized protein 20256,23548,27283 At1g34010 (Uncharacterized protein At1g34010),Low affinity potassium transport system protein (Uncharacterized protein At1g22790),Uncharacterized protein plasma membrane [GO:0005886] locus:2009081;,locus:2199660; AT1G34010,AT1G22790 NA Os05g0591450 protein (Fragment),Os01g0589700 protein (Fragment) A0A0P0WRK2,A0A0P0V4P1 A0A0P0WRK2_ORYSJ,A0A0P0V4P1_ORYSJ Os05g0591450 OSNPB_050591450,Os01g0589700 OSNPB_010589700 ENOG411E3F3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA QLQ Growth-regulating factor 2 (OsGRF2) (Transcription activator GRF2),Os04g0307300 protein (Fragment) Q6AWY7,A0A0P0W8T3 GRF2_ORYSJ,A0A0P0W8T3_ORYSJ GRF2 Os06g0204800 LOC_Os06g10310 OSJNBb0015B15.12,Os04g0307300 OSNPB_040307300 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411E3F1 A0A1P8ANI6,F4HYI1 A0A1P8ANI6_ARATH,F4HYI1_ARATH Nuclear localized protein 50857,50454 Nuclear localized protein locus:2198100; AT1G48580 Inherit from euNOG: chromosome 17 open reading frame 53 Os07g0258800 protein A0A0P0X470 A0A0P0X470_ORYSJ Os07g0258800 OSNPB_070258800 ENOG411E3F6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os05g0482501 protein A0A0P0WNQ9 A0A0P0WNQ9_ORYSJ Os05g0482501 OSNPB_050482501 ENOG411E3F4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor OSJNBa0027P08.11 protein (Os04g0445300 protein) (cDNA clone:001-110-H04, full insert sequence) Q7XUW7 Q7XUW7_ORYSJ Os04g0445300 OSJNBa0027P08.11 OSNPB_040445300 ENOG411E3FZ B9DG97,Q9FXC5,Q8GYY2,Q9FYM6,A0A1P8AW28,F4I989 B9DG97_ARATH,Q9FXC5_ARATH,Q8GYY2_ARATH,Q9FYM6_ARATH,A0A1P8AW28_ARATH,F4I989_ARATH AT1G24350 protein (Acid phosphatase/vanadium-dependent haloperoxidase-related protein),Acid phosphatase/vanadium-dependent haloperoxidase-related protein (At1g67600) (F12A21.27),Acid phosphatase/vanadium-dependent haloperoxidase-related protein (At1g24350) (Uncharacterized protein At1g24350/F21J9_310),Acid phosphatase/vanadium-dependent haloperoxidase-related protein (F21J9.1),Acid phosphatase/vanadium-dependent haloperoxidase-related protein 18053,17599,16009,16409,15768,20054 AT1G24350 protein (Acid phosphatase/vanadium-dependent haloperoxidase-related protein),Acid phosphatase/vanadium-dependent haloperoxidase-related protein (At1g67600) (F12A21.27),Acid phosphatase/vanadium-dependent haloperoxidase-related protein (At1g24350) (Uncharacterized protein At1g24350/F21J9_310),Acid phosphatase/vanadium-dependent haloperoxidase-related protein (F21J9.1),Acid phosphatase/vanadium-dependent haloperoxidase-related protein integral component of membrane [GO:0016021]; peroxidase activity [GO:0004601] locus:2008575;,locus:2032377; AT1G24350,AT1G67600 Acid phosphatase vanadium-dependent Os01g0901800 protein,Os01g0901800 protein (cDNA clone:J023045G07, full insert sequence),Os08g0127500 protein (cDNA clone:J023087N16, full insert sequence) Q5N6Y4,Q5N6Y5,Q6ZK50 Q5N6Y4_ORYSJ,Q5N6Y5_ORYSJ,Q6ZK50_ORYSJ P0551C06.13-2 Os01g0901800 P0035F12.32-2 OSNPB_010901800,P0551C06.13-1 P0035F12.32-1 Os01g0901800 OsJ_04440 OSNPB_010901800,Os08g0127500 OJ1163_G08.27 OSNPB_080127500 ENOG411E3FX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-cell receptor-associated protein 31-like NA NA NA NA NA NA NA ENOG411E3FY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive NA NA NA NA NA NA NA ENOG411E3FP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411E3FQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome b5 Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed (Os12g0223300 protein) (cDNA clone:006-309-C09, full insert sequence),Os12g0223300 protein (Fragment) Q2QVN9,A0A0N7KTR9 Q2QVN9_ORYSJ,A0A0N7KTR9_ORYSJ Os12g0223300 LOC_Os12g12170 Os12g0223300 OsJ_35599 OSNPB_120223300,Os12g0223300 OSNPB_120223300 ENOG411E3FV Q9SKH9 Q9SKH9_ARATH BSD domain-containing protein (Expressed protein) (Uncharacterized protein At2g10950) (Uncharacterized protein At2g10960) 37335 BSD domain-containing protein (Expressed protein) (Uncharacterized protein At2g10950) (Uncharacterized protein At2g10960) locus:2041937; AT2G10950 NA NA NA NA NA NA NA NA ENOG411E3FU dl4380w O23514 O23514_ARATH At4g16710 (Glycosyltransferase family protein 28) (Uncharacterized protein AT4g16710) (Uncharacterized protein dl4380w) ARA:AT4G16710-MONOMER; 19582 At4g16710 (Glycosyltransferase family protein 28) (Uncharacterized protein AT4g16710) (Uncharacterized protein dl4380w) UDP-N-acetylglucosamine transferase complex [GO:0043541]; transferase activity, transferring hexosyl groups [GO:0016758]; dolichol-linked oligosaccharide biosynthetic process [GO:0006488] locus:2129071; AT4G16710 UDP-N-acetylglucosamine transferase subunit ALG13 Os02g0467700 protein (Fragment) Q0E1A4 Q0E1A4_ORYSJ Os02g0467700 Os02g0467700 OSNPB_020467700 ENOG411E3FJ Q6GKW1,F4ILY0,A8MQP4 Q6GKW1_ARATH,F4ILY0_ARATH,A8MQP4_ARATH At2g41945 (Transmembrane protein),Transmembrane protein 17052,22132,17826 At2g41945 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; embryo development ending in seed dormancy [GO:0009793]; seed maturation [GO:0010431] locus:1006230174; AT2G41945 Gb protein Gb protein-like (Os06g0206200 protein) (cDNA clone:J023139F14, full insert sequence) Q69TG0 Q69TG0_ORYSJ Os06g0206200 Os06g0206200 OsJ_20523 OSNPB_060206200 P0529B09.2 ENOG411E3FH Q949S3 Q949S3_ARATH Putative membrane lipoprotein (Uncharacterized protein At3g42725) 22704 Putative membrane lipoprotein (Uncharacterized protein At3g42725) integral component of membrane [GO:0016021] locus:505006385; AT3G42725 NA NA NA NA NA NA NA NA ENOG411E3FN RIC5 F4J424,A0A1I9LQ47 RIC5_ARATH,A0A1I9LQ47_ARATH CRIB domain-containing protein RIC5 (ROP-interactive CRIB motif-containing protein 5) (Target of ROP protein RIC5),ROP-interactive CRIB motif-containing protein 5 "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Is involved in pollen tube growth regulation through its interaction with ARAC11/ROP1. {ECO:0000269|PubMed:11752391}." MISCELLANEOUS: Over-expression of RIC5 in tobacco germinating pollen reduces pollen tube expansion elongation. {ECO:0000305|PubMed:11752391}. 20702,17667 CRIB domain-containing protein RIC5 (ROP-interactive CRIB motif-containing protein 5) (Target of ROP protein RIC5),ROP-interactive CRIB motif-containing protein 5 apical plasma membrane [GO:0016324]; pollen tube growth [GO:0009860]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in flowers and pollen. {ECO:0000269|PubMed:11752391}. locus:2090880; AT3G23380 rop-interactive CRIB motif-containing protein Os07g0446000 protein (cDNA clone:J023144B01, full insert sequence) Q8LH90 Q8LH90_ORYSJ P0030H06.108 Os07g0446000 OSNPB_070446000 ENOG411E3FM Q9SJL4 Q9SJL4_ARATH Expressed protein (Uncharacterized protein At2g36930) (Zinc finger (C2H2 type) family protein) 22629 Expressed protein (Uncharacterized protein At2g36930) (Zinc finger (C2H2 type) family protein) preribosome, large subunit precursor [GO:0030687]; nucleic acid binding [GO:0003676]; ribosomal large subunit binding [GO:0043023]; zinc ion binding [GO:0008270]; ribosomal large subunit export from nucleus [GO:0000055] locus:2057926; AT2G36930 zinc finger protein Os08g0564500 protein (cDNA, clone: J090081A12, full insert sequence) A3BVU4 A3BVU4_ORYSJ Os08g0564500 OsJ_28308 OSNPB_080564500 ENOG411E3FC YAB2 Q9XFB0 YAB2_ARATH Putative axial regulator YABBY 2 FUNCTION: Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. 20701 Putative axial regulator YABBY 2 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abaxial cell fate specification [GO:0010158]; specification of floral organ number [GO:0048833] DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. locus:2826731; AT1G08465 Axial regulator NA NA NA NA NA NA NA ENOG411E3FD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q8S1R2 Q8S1R2_ORYSJ Os01g0837400 OsJ_04004 OSNPB_010837400 P0506B12.42 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EK2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-patch domain NA NA NA NA NA NA NA ENOG411EK2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-patch domain NA NA NA NA NA NA NA ENOG411EK2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK2E T2J15.1,T17F15.210 O04244,Q9SIU3,Q9FKH5,Q9SIU4,Q9C7Z7,Q9SHS1,Q3E6T3,Q9SU55,O22221,Q9FG64,Q1G3S7,Q6DR65,F4JWP5,F4JY67,A0A178UN75,F4I3A1,F4ICS1 Y4200_ARATH,Q9SIU3_ARATH,Q9FKH5_ARATH,Q9SIU4_ARATH,Q9C7Z7_ARATH,Q9SHS1_ARATH,Q3E6T3_ARATH,Q9SU55_ARATH,O22221_ARATH,Q9FG64_ARATH,Q1G3S7_ARATH,Q6DR65_ARATH,F4JWP5_ARATH,F4JY67_ARATH,A0A178UN75_ARATH,F4I3A1_ARATH,F4ICS1_ARATH Uncharacterized protein At4g02000,Putative Ta11-like non-LTR retroelement protein (Ta11-like non-LTR retrotransposon),Similarity to Ta11-like non-LTR retroelement protein (Ta11-like non-LTR retrotransposon),Nucleic acid-binding/zinc ion-binding protein (Uncharacterized protein T2J15.1),Ta11-like non-LTR retrotransposon,Ta11-like non-LTR retrotransposon (Uncharacterized protein T17F15.210),Nucleic acid binding / zinc ion binding protein (Similarity to Ta11-like non-LTR retroelement protein),Nucleic acid binding / zinc ion binding protein,Putative nucleic-acid protein,Uncharacterized protein,Nucleic acid-binding/zinc ion-binding protein 36365,31929,14378,39629,34260,45552,42384,34755,42891,41877,46316,35640,42422,37491,42332,20135,28176 Uncharacterized protein At4g02000,Putative Ta11-like non-LTR retroelement protein (Ta11-like non-LTR retrotransposon),Similarity to Ta11-like non-LTR retroelement protein (Ta11-like non-LTR retrotransposon),Nucleic acid-binding/zinc ion-binding protein (Uncharacterized protein T2J15.1),Ta11-like non-LTR retrotransposon,Ta11-like non-LTR retrotransposon (Uncharacterized protein T17F15.210),Nucleic acid binding / zinc ion binding protein (Similarity to Ta11-like non-LTR retroelement protein),Nucleic acid binding / zinc ion binding protein,Putative nucleic-acid protein,Uncharacterized protein,Nucleic acid-binding/zinc ion-binding protein locus:2132163;,locus:2054100;,locus:1006230599;,locus:2054168;,locus:2825073;,locus:2060331;,locus:1006230619;,locus:2097850;,locus:2062652;,locus:1009023409;,locus:4515102790;,locus:2827815;,locus:2146990;,locus:2179414;,locus:504956119;,locus:2031108; AT4G02000,AT2G13510,AT5G35737,AT2G13500,AT1G48095,AT2G13450,AT5G18636,AT3G47920,AT2G41590,AT5G36228,AT2G02103,AT2G17920,AT5G25200,AT5G25600,AT1G36960,AT1G43680 NA NA NA NA NA NA NA NA ENOG411EASK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os07g0613900 protein A0A0P0X939 A0A0P0X939_ORYSJ Os07g0613900 OSNPB_070613900 ENOG411EASJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0681400 protein (Fragment),Os01g0545500 protein A0A0N7KTC7,A0A0P0V3S2 A0A0N7KTC7_ORYSJ,A0A0P0V3S2_ORYSJ Os11g0681400 OSNPB_110681400,Os01g0545500 OSNPB_010545500 ENOG411EASI SCL27,SCL22 Q7XJM8,Q9M000 SCL27_ARATH,SCL22_ARATH Scarecrow-like protein 27 (AtSCL27) (GRAS family protein 14) (AtGRAS-14),Scarecrow-like protein 22 (AtSCL22) (GRAS family protein 21) (AtGRAS-21) (SCL6-III) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 70206,68090 Scarecrow-like protein 27 (AtSCL27) (GRAS family protein 14) (AtGRAS-14),Scarecrow-like protein 22 (AtSCL22) (GRAS family protein 21) (AtGRAS-21) (SCL6-III) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; cell division [GO:0051301]; regulation of transcription, DNA-templated [GO:0006355]; root hair cell tip growth [GO:0048768]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. locus:2055622;,locus:2101801; AT2G45160,AT3G60630 GRAS domain family NA NA NA NA NA NA NA ENOG411EASH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF NA NA NA NA NA NA NA ENOG411EASN Q8GYP4 Q8GYP4_ARATH Uncharacterized protein At4g18630 (Uncharacterized protein At4g18630/F28A21_40) 54374 Uncharacterized protein At4g18630 (Uncharacterized protein At4g18630/F28A21_40) locus:2124087; AT4G18630 Protein of unknown function (DUF688) NA NA NA NA NA NA NA ENOG411EASM F4I8T0,F4I8S9,F4I8T1 F4I8T0_ARATH,F4I8S9_ARATH,F4I8T1_ARATH Uncharacterized protein 25936,43009,24412 Uncharacterized protein locus:2201081; AT1G05550 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EASC TRM21 Q9LKC1 Q9LKC1_ARATH Methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) (Uncharacterized protein At5g43880) 93492 Methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) (Uncharacterized protein At5g43880) membrane [GO:0016020] locus:2149519; AT5G43880 Protein of unknown function (DUF3741) NA NA NA NA NA NA NA ENOG411EASB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EASA HSP22.0 Q38806 HSP22_ARATH 22.0 kDa heat shock protein (AtHsp22.0) 21997 22.0 kDa heat shock protein (AtHsp22.0) endoplasmic reticulum [GO:0005783]; response to heat [GO:0009408] locus:2122774; AT4G10250 Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411EASG ERF056 Q9SIE4 ERF56_ARATH Ethylene-responsive transcription factor ERF056 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 29793 Ethylene-responsive transcription factor ERF056 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2060385; AT2G22200 AP2 NA NA NA NA NA NA NA ENOG411EASF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0373400 protein A0A0P0XFA3 A0A0P0XFA3_ORYSJ Os08g0373400 OSNPB_080373400 ENOG411EASE LACS6,LACS7 Q8LPS1,Q8LKS5 LACS6_ARATH,LACS7_ARATH Long chain acyl-CoA synthetase 6, peroxisomal (EC 6.2.1.3),Long chain acyl-CoA synthetase 7, peroxisomal (EC 6.2.1.3) DISRUPTION PHENOTYPE: Seedlings of the lacs6 and lacs7 double mutant were arrested in postgerminative growth due to inability to mobilize fatty acids into beta-oxidation, a necessary process to pursue the development. {ECO:0000269|PubMed:14742880}. FUNCTION: Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. {ECO:0000269|PubMed:12481085, ECO:0000269|PubMed:14742880}.,FUNCTION: Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process (By similarity). {ECO:0000250, ECO:0000269|PubMed:14742880}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT3G05970-MONOMER;MetaCyc:AT3G05970-MONOMER;,ARA:AT5G27600-MONOMER;MetaCyc:AT5G27600-MONOMER; R-ATH-2046105;R-ATH-2046106;R-ATH-75876; 6.2.1.3 76603,77353 Long chain acyl-CoA synthetase 6, peroxisomal (EC 6.2.1.3),Long chain acyl-CoA synthetase 7, peroxisomal (EC 6.2.1.3) glyoxysomal membrane [GO:0046861]; membrane [GO:0016020]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; fatty acid metabolic process [GO:0006631]; multicellular organism development [GO:0007275]; response to ozone [GO:0010193],peroxisome [GO:0005777]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; fatty acid metabolic process [GO:0006631]; response to ozone [GO:0010193]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Induced during seed germination. {ECO:0000269|PubMed:12366803}. TISSUE SPECIFICITY: Preferentially expressed in seeds and senescent leaves. {ECO:0000269|PubMed:16256065}.,TISSUE SPECIFICITY: Preferentially expressed in seeds. {ECO:0000269|PubMed:16256065}. locus:2083013;,locus:2143661; AT3G05970,AT5G27600 AMP-binding enzyme AMP-binding enzyme family protein, expressed (Os12g0143900 protein),AMP-binding enzyme family protein, expressed (Os11g0147000 protein) Q2QXT1,Q2RAL6 Q2QXT1_ORYSJ,Q2RAL6_ORYSJ LOC_Os12g04990 Os12g0143900 OsJ_35198 OSNPB_120143900,LOC_Os11g04980 Os11g0147000 OSNPB_110147000 ENOG411EASD T28P6.13 Q1PFW9,Q9SXA7,Q9SXA9 Q1PFW9_ARATH,Q9SXA7_ARATH,Q9SXA9_ARATH Transmembrane protein, putative (DUF761),At1g11210 (At1g11210/T28P6_5) (Cotton fiber protein, putative (DUF761)) (T28P6.13 protein),T28P6.11 protein (Transmembrane protein, putative (DUF761)) 34600,34902,39347 Transmembrane protein, putative (DUF761),At1g11210 (At1g11210/T28P6_5) (Cotton fiber protein, putative (DUF761)) (T28P6.13 protein),T28P6.11 protein (Transmembrane protein, putative (DUF761)) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; response to oxidative stress [GO:0006979] locus:2202094;,locus:2202109; AT1G11230,AT1G11210 Cotton fibre expressed protein NA NA NA NA NA NA NA ENOG411EASZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retroviral aspartyl protease NA NA NA NA NA NA NA ENOG411EASY CXE3 Q9FX92 CXE3_ARATH Probable carboxylesterase 3 (AtCXE3) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT1G49640-MONOMER; 3.1.1.1 35429 Probable carboxylesterase 3 (AtCXE3) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2012196; AT1G49640 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EASX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EASS F4IK85 F4IK85_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 78135 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; pollen tube growth [GO:0009860]; response to stress [GO:0006950] locus:2063601; AT2G07020 Universal stress protein family NA NA NA NA NA NA NA ENOG411EASR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase NA NA NA NA NA NA NA ENOG411EASQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os11g0174900 protein,Os11g0174600 protein,Os08g0328550 protein,Os11g0175101 protein,Os11g0174700 protein Q53PG4,Q53PG6,A0A0P0XER3,A0A0P0XZR2,A0A0P0XZT3 Q53PG4_ORYSJ,Q53PG6_ORYSJ,A0A0P0XER3_ORYSJ,A0A0P0XZR2_ORYSJ,A0A0P0XZT3_ORYSJ Os11g0174900 LOC_Os11g07380 OSNPB_110174900,Os11g0174600 LOC_Os11g07360 OSNPB_110174600,Os08g0328550 OSNPB_080328550,Os11g0175101 OSNPB_110175101,Os11g0174700 OSNPB_110174700 ENOG411EASP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thiamine pyrophosphate enzyme N-terminal TPP binding domain NA NA NA NA NA NA NA ENOG411EASW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EASU GDPDL5 F4JEQ1 GPDL5_ARATH Glycerophosphodiester phosphodiesterase GDPDL5 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 5) (ATGDPDL5) (Glycerophosphodiesterase-like 4) (Protein SHV3-LIKE 3) 3.1.4.46 81360 Glycerophosphodiester phosphodiesterase GDPDL5 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 5) (ATGDPDL5) (Glycerophosphodiesterase-like 4) (Protein SHV3-LIKE 3) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in stems, flowers and siliques. {ECO:0000269|PubMed:21323773}. locus:2085710; AT3G20520 phosphodiesterase NA NA NA NA NA NA NA ENOG411EAST O22818 PGLR6_ARATH Probable polygalacturonase At2g43860 (PG) (EC 3.2.1.15) (Pectinase At2g43860) ARA:AT2G43860-MONOMER; 3.2.1.15 43462 Probable polygalacturonase At2g43860 (PG) (EC 3.2.1.15) (Pectinase At2g43860) cell wall [GO:0005618]; extracellular region [GO:0005576]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed in developing and germinated seeds in the chalazal region immediately adjacent to the site of penetration of the radicle through the testa. {ECO:0000269|PubMed:17010199, ECO:0000269|PubMed:17928369}. locus:2043974; AT2G43860 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411EAS9 WRKY62 Q9LZV6 WRK62_ARATH Probable WRKY transcription factor 62 (WRKY DNA-binding protein 62) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 30443 Probable WRKY transcription factor 62 (WRKY DNA-binding protein 62) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; salicylic acid mediated signaling pathway [GO:0009863]; transcription, DNA-templated [GO:0006351] locus:2181052; AT5G01900 WRKY NA NA NA NA NA NA NA ENOG411EAS8 Q8S8Q9,Q3E9Z8,Q0WRU9,A0A1P8AYY1,F4IR26 FBL40_ARATH,FB236_ARATH,FBK44_ARATH,A0A1P8AYY1_ARATH,F4IR26_ARATH F-box/LRR-repeat protein At2g43260,Putative F-box protein At4g17780,F-box/kelch-repeat protein At2g43445,F-box and associated interaction domains-containing protein 48963,45985,46720,50474,44541 F-box/LRR-repeat protein At2g43260,Putative F-box protein At4g17780,F-box/kelch-repeat protein At2g43445,F-box and associated interaction domains-containing protein nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357],integral component of membrane [GO:0016021] locus:2041016;,locus:2129430;,locus:4010713706;,locus:2058127; AT2G43260,AT4G17780,AT2G43445,AT2G43270 F-box associated domain NA NA NA NA NA NA NA ENOG411EAS3 OCT6 Q9SA36 OCT6_ARATH Organic cation/carnitine transporter 6 (AtOCT6) FUNCTION: High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations (By similarity). {ECO:0000250}. R-ATH-112311;R-ATH-181430;R-ATH-197264;R-ATH-200425;R-ATH-2161517;R-ATH-442660;R-ATH-549127;R-ATH-561048; 58351 Organic cation/carnitine transporter 6 (AtOCT6) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; organic anion transmembrane transporter activity [GO:0008514]; cellular response to salt stress [GO:0071472]; cellular response to water deprivation [GO:0042631] TISSUE SPECIFICITY: Expressed in roots and stems. In the stem of secondary inflorescences, localized to the phloem. Also present in flowers, specifically in the stamen, in the filaments and the connective, and restricted to major veins in leaves. {ECO:0000269|PubMed:18710496}. locus:2032790; AT1G16370 organic cation carnitine transporter 6 NA NA NA NA NA NA NA ENOG411EAS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent protease La (LON) domain NA NA NA NA NA NA NA ENOG411EAS1 Q4PSX0 Q4PSX0_ARATH Actin cross-linking protein 43945 Actin cross-linking protein locus:2196764; AT1G69900 Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411EAS0 COBL5 Q9FME5 COBL5_ARATH COBRA-like protein 5 MISCELLANEOUS: COBL5 appears to be a truncated member of the COBRA family due to a in-frame mutation that introduces a stop codon. This truncated gene is actively transcribed. 22480 COBRA-like protein 5 anchored component of membrane [GO:0031225]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215]; defense response to fungus [GO:0050832] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12376623}. locus:2173547; AT5G60950 cobra-like protein 5 precursor NA NA NA NA NA NA NA ENOG411EAS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0191000 protein (Putative RPR1) Q6YUT7 Q6YUT7_ORYSJ Os02g0191000 Os02g0191000 OsJ_05705 OSJNBb0031B09.29 OSNPB_020191000 P0453H10.4 ENOG411EAS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PAP associated domain containing NA NA NA NA NA NA NA ENOG411EAS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EG7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Complex I intermediate-associated protein 30 (CIA30) NA NA NA NA NA NA NA ENOG411EG7H Q1G3E1 Q1G3E1_ARATH Uncharacterized protein 13931 Uncharacterized protein locus:4010713533; AT1G48745 NA NA NA NA NA NA NA NA ENOG411EG7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: GNAT family acetyltransferase NA NA NA NA NA NA NA ENOG411EG7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EG7D Q94JV8 Q94JV8_ARATH AT2g04793 (At2g04793/At2g04793) (Expressed protein) 10328 AT2g04793 (At2g04793/At2g04793) (Expressed protein) response to oxidative stress [GO:0006979] locus:505006236; AT2G04795 NA NA NA NA NA NA NA NA ENOG411EG7G Q9LTD3 Q9LTD3_ARATH At3g23170 11697 At3g23170 locus:2086228; AT3G23170 NA NA NA NA NA NA NA NA ENOG411EG7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os10g0551700 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (Putative lipid transfer protein) (cDNA clone:002-134-A09, full insert sequence) Q9FWN9 Q9FWN9_ORYSJ OSJNBa0015J15.17 LOC_Os10g40420 Os10g0551700 OSNPB_100551700 ENOG411EG7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0244750 protein A0A0P0VVC4 A0A0P0VVC4_ORYSJ Os03g0244750 OSNPB_030244750 ENOG411EG7Z F24G24.70 O82615,Q8GY66 O82615_ARATH,Q8GY66_ARATH At4g10270 (Probable wound-induced protein) (T9A4.6 protein) (Wound-responsive family protein),At4g10262 (Wound-responsive family protein) 9824,9267 At4g10270 (Probable wound-induced protein) (T9A4.6 protein) (Wound-responsive family protein),At4g10262 (Wound-responsive family protein) locus:2122799;,locus:1005716386; AT4G10270,AT4G10265 Wound-induced protein NA NA NA NA NA NA NA ENOG411EG7S LCR57,PDF3.2,LCR58,PDF3.1 P82771,P82773,P82772,P82789 DF179_ARATH,DF182_ARATH,DF180_ARATH,DF181_ARATH Putative defensin-like protein 179 (Putative low-molecular-weight cysteine-rich protein 57) (Protein LCR57),Defensin-like protein 182 (Low-molecular-weight cysteine-rich protein 59) (Protein LCR59) (Plant defensin 3.2),Putative defensin-like protein 180 (Putative low-molecular-weight cysteine-rich protein 58) (Protein LCR58),Defensin-like protein 181 (Low-molecular-weight cysteine-rich protein 80) (Protein LCR80) (Plant defensin 3.1) FUNCTION: Confers broad-spectrum resistance to pathogens. 12926,13863,13625,13122 Putative defensin-like protein 179 (Putative low-molecular-weight cysteine-rich protein 57) (Protein LCR57),Defensin-like protein 182 (Low-molecular-weight cysteine-rich protein 59) (Protein LCR59) (Plant defensin 3.2),Putative defensin-like protein 180 (Putative low-molecular-weight cysteine-rich protein 58) (Protein LCR58),Defensin-like protein 181 (Low-molecular-weight cysteine-rich protein 80) (Protein LCR80) (Plant defensin 3.1) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],extracellular region [GO:0005576]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023418;,locus:2126545;,locus:1009023434;,locus:2173288; AT5G42242,AT4G30070,AT5G38317,AT5G38330 Low-molecular-weight cysteine-rich NA NA NA NA NA NA NA ENOG411EG7R Q9XEB2,A0A1P8B772,A0A1P8B8R6 Q9XEB2_ARATH,A0A1P8B772_ARATH,A0A1P8B8R6_ARATH Homeodomain-like superfamily protein (Uncharacterized protein AT4g04580) (Uncharacterized protein F4H6.10),Myb family transcription factor,Myb-like DNA-binding domain protein 19216,13205,25325 Homeodomain-like superfamily protein (Uncharacterized protein AT4g04580) (Uncharacterized protein F4H6.10),Myb family transcription factor,Myb-like DNA-binding domain protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2125771; AT4G04580 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EG79 Q5BQ22 Q5BQ22_ARATH Expressed protein (TPRXL) 18055 Expressed protein (TPRXL) locus:2033163; AT1G06930 NA NA NA NA NA NA NA NA ENOG411EG78 RIC2 Q8GYU0,A0A1P8APS5,A0A1P8APT1 RIC2_ARATH,A0A1P8APS5_ARATH,A0A1P8APT1_ARATH CRIB domain-containing protein RIC2 (ROP-interactive CRIB motif-containing protein 2) (Target of ROP protein RIC2),ROP-interactive CRIB motif-containing protein 2 "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Is involved in pollen tube growth regulation through its interaction with ARAC11/ROP1. {ECO:0000269|PubMed:11752391}." MISCELLANEOUS: Over-expression of RIC2 in tobacco germinating pollen reduces pollen tube elongation. {ECO:0000305|PubMed:11752391}. 12586,19091,9542 CRIB domain-containing protein RIC2 (ROP-interactive CRIB motif-containing protein 2) (Target of ROP protein RIC2),ROP-interactive CRIB motif-containing protein 2 plasma membrane [GO:0005886]; pollen tube growth [GO:0009860]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, siliques and pollen. {ECO:0000269|PubMed:11752391}. locus:2016009; AT1G27380 rop-interactive crib motif-containing protein 2 NA NA NA NA NA NA NA ENOG411EG76 CML34 Q9SRP5 CML34_ARATH Probable calcium-binding protein CML34 (Calmodulin-like protein 2) (Calmodulin-like protein 34) FUNCTION: Potential calcium sensor. {ECO:0000250}. 14732 Probable calcium-binding protein CML34 (Calmodulin-like protein 2) (Calmodulin-like protein 34) calcium ion binding [GO:0005509] locus:2099679; AT3G03410 Pfam:efhand NA NA NA NA NA NA NA ENOG411EG70 NIMIN-1 Q9FNZ5 NIMI1_ARATH Protein NIM1-INTERACTING 1 (Protein NIMIN-1) 16818 Protein NIM1-INTERACTING 1 (Protein NIMIN-1) nucleus [GO:0005634]; defense response to bacterium [GO:0042742]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of systemic acquired resistance [GO:0010112] locus:2196065; AT1G02450 NA NA NA NA NA NA NA NA ENOG411E2FQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Immediate-early fungal elicitor protein-like (Os06g0498650 protein) Q656A8 Q656A8_ORYSJ Os06g0498650 OsJ_21448 OSNPB_060498650 P0596H06.6 ENOG411E1IY Q8GY13 Q8GY13_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At2g38500) (Uncharacterized protein At2g38500) 40632 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At2g38500) (Uncharacterized protein At2g38500) integral component of membrane [GO:0016021] locus:2057130; AT2G38500 NA Os01g0823400 protein,Os02g0578333 protein A0A0P0V9S7,A0A0P0VKR5 A0A0P0V9S7_ORYSJ,A0A0P0VKR5_ORYSJ Os01g0823400 OSNPB_010823400,Os02g0578333 OSNPB_020578333 ENOG411E1IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family Os06g0653100 protein (Putative senescence-associated protein 5) (cDNA, clone: J090089G04, full insert sequence) Q67WQ6 Q67WQ6_ORYSJ Os06g0653100 OsJ_22196 OSJNBa0085J13.14 OSNPB_060653100 ENOG411E1IZ Q94K98 Y1720_ARATH Glycosyltransferase family 92 protein At1g27200 (EC 2.4.1.-) 2.4.1.- 66360 Glycosyltransferase family 92 protein At1g27200 (EC 2.4.1.-) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2205829; AT1G27200 UPF0392 protein RCOM_0530710-like NA NA NA NA NA NA NA ENOG411E1IM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os07g0524200 protein (cDNA clone:002-141-D05, full insert sequence) Q69SA8 Q69SA8_ORYSJ Os07g0524200 OSJNBb0052O11.109 OSNPB_070524200 P0678G09.1 ENOG411E1I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0476000 protein (TMV-MP30 binding protein 2C-like) (cDNA clone:J033000J24, full insert sequence) Q651Z1 Q651Z1_ORYSJ Os09g0476000 Os09g0476000 OSNPB_090476000 P0556A05.10 ENOG411DQB9 KAT2,KAT1 Q38849,Q39128,A0A1P8B8U1 KAT2_ARATH,KAT1_ARATH,A0A1P8B8U1_ARATH Potassium channel KAT2,Potassium channel KAT1,Potassium channel KAT1-like protein FUNCTION: Highly selective inward-rectifying potassium channel. This voltage-dependent channel could mediate long-term potassium influx into guard cells leading to stomatal opening. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. The channel activity is enhanced upon external acidification.,FUNCTION: Highly selective inward-rectifying potassium channel. This voltage-gated channel could mediate long-term potassium influx into guard cells leading to stomatal opening. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. The channel activity is enhanced upon external acidification. Also permeable to ammonium ions. Blocked by tetraethylammonium and barium ions. {ECO:0000269|PubMed:8966547}. ARA:GQT-883-MONOMER;,ARA:AT5G46240-MONOMER;MetaCyc:MONOMER-14553; 80150,78271,81525 Potassium channel KAT2,Potassium channel KAT1,Potassium channel KAT1-like protein integral component of plasma membrane [GO:0005887]; voltage-gated potassium channel activity [GO:0005249]; circadian rhythm [GO:0007623]; regulation of membrane potential [GO:0042391]; response to high light intensity [GO:0009644]; stomatal movement [GO:0010118],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; identical protein binding [GO:0042802]; inward rectifier potassium channel activity [GO:0005242]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; voltage-gated potassium channel activity [GO:0005249] TISSUE SPECIFICITY: Expressed in guard cells of hypocotyls, stems leaves and petioles. Detected also in the phloem of minor veins and in flower at a lower level.,TISSUE SPECIFICITY: Expressed in guard cells, and in roots. {ECO:0000269|PubMed:7480337}. locus:2005531;,locus:2170468; AT4G18290,AT5G46240 Potassium channel Potassium channel KAT1,Os02g0245800 protein (Fragment) Q6K3T2,A0A0P0VH16 KAT1_ORYSJ,A0A0P0VH16_ORYSJ Os02g0245800 LOC_Os02g14840 OJ1134_F06.17 OSJNBa0090H18.7,Os02g0245800 OSNPB_020245800 FUNCTION: Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization (By similarity). {ECO:0000250}. ENOG411DQB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate-induced protein 1 conserved region Os10g0376400 protein (Phosphate-induced protein 1 conserved region containing protein) Q8S7K1 Q8S7K1_ORYSJ Os10g0376400 LOC_Os10g22990 OSJNBa0095C06.7 OSNPB_100376400 ENOG411DQB7 PRXIIE Q949U7 PRX2E_ARATH Peroxiredoxin-2E, chloroplastic (EC 1.11.1.15) (Peroxiredoxin IIE) (Thioredoxin peroxidase 2E) FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides (By similarity). May be involved in chloroplast redox homeostasis (Probable). {ECO:0000250|UniProtKB:A9PCL4, ECO:0000305|PubMed:15890615}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. {ECO:0000250|UniProtKB:A9PCL4}. ARA:AT3G52960-MONOMER; R-ATH-3299685; 1.11.1.15 24684 Peroxiredoxin-2E, chloroplastic (EC 1.11.1.15) (Peroxiredoxin IIE) (Thioredoxin peroxidase 2E) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plant-type cell wall [GO:0009505]; plastid [GO:0009536]; thylakoid [GO:0009579]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454]; defense response to bacterium [GO:0042742] TISSUE SPECIFICITY: Expressed in all tissues but predominantly in buds, siliques and seeds. {ECO:0000269|PubMed:12913160, ECO:0000269|Ref.4}. locus:2085181; AT3G52960 Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in chloroplast redox homeostasis Peroxiredoxin-2E-1, chloroplastic (EC 1.11.1.15) (Peroxiredoxin IIE-1) (Thioredoxin peroxidase 2E-1),Peroxiredoxin-2E-2, chloroplastic (EC 1.11.1.15) (Peroxiredoxin IIE-2) (Thioredoxin peroxidase 2E-2) Q69TY4,Q7F8S5 PR2E1_ORYSJ,PR2E2_ORYSJ PRXIIE-1 Os06g0625500 LOC_Os06g42000 OSJNBa0029G06.40 OSJNBa0072A21.9,PRXIIE-2 Os02g0192700 LOC_Os02g09940 P0437H03.112 P0453H10.33 FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides (By similarity). May be involved in chloroplast redox homeostasis (By similarity). {ECO:0000250|UniProtKB:A9PCL4, ECO:0000250|UniProtKB:Q949U7}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. {ECO:0000250|UniProtKB:A9PCL4}. ENOG411DQB6 F4I7U9 F4I7U9_ARATH PLATZ transcription factor family protein 27877 PLATZ transcription factor family protein locus:2015761; AT1G31040 zinc-binding protein Os06g0666100 protein (Putative zinc-binding protein) (cDNA clone:J023090I20, full insert sequence),Os02g0172800 protein (Putative zinc-binding protein) (cDNA clone:J033148H01, full insert sequence) Q655W8,Q6H517 Q655W8_ORYSJ,Q6H517_ORYSJ Os06g0666100 Os06g0666100 OSNPB_060666100 P0473H04.39 P0637D03.10,Os02g0172800 OsJ_05564 OSJNBa0073A21.2 OSNPB_020172800 P0030G02.53 ENOG411DQB5 T7I23.21 O81915 O81915_ARATH At1g02260 (Divalent ion symporter) (T7I23.21 protein) 54724 At1g02260 (Divalent ion symporter) (T7I23.21 protein) integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2204858; AT1G02260 transporter Os10g0447900 protein,Os03g0147400 protein (Putative anion transporter) (Transmembrane protein, putative, expressed),Os03g0147400 protein (Fragment) A3C592,Q10RS7,A0A0P0VT53 A3C592_ORYSJ,Q10RS7_ORYSJ,A0A0P0VT53_ORYSJ Os10g0447900 OsJ_31712 OSNPB_100447900,LOC_Os03g05390 Os03g0147400 OsJ_09409 OSJNBa0067N01.6 OSNPB_030147400,Os03g0147400 OSNPB_030147400 ENOG411DQB4 Q8GXI1,Q5XEN2,A0A1P8AM89 Q8GXI1_ARATH,Q5XEN2_ARATH,A0A1P8AM89_ARATH Ubiquitin-like superfamily protein (Uncharacterized protein At5g25340) (Uncharacterized protein At5g25340/F18G18_80),At1g80060 (Ubiquitin-like superfamily protein),Ubiquitin-like superfamily protein 23453,27289,20898 Ubiquitin-like superfamily protein (Uncharacterized protein At5g25340) (Uncharacterized protein At5g25340/F18G18_80),At1g80060 (Ubiquitin-like superfamily protein),Ubiquitin-like superfamily protein locus:2145502;,locus:2016244; AT5G25340,AT1G80060 NA Os02g0188500 protein (cDNA clone:J033079N13, full insert sequence) Q6ZHR8 Q6ZHR8_ORYSJ Os02g0188500 OJ1145_F01.17 OSNPB_020188500 ENOG411DQB2 GGAT2,GGAT1 Q9S7E9,Q9LR30 GGT2_ARATH,GGT1_ARATH Glutamate--glyoxylate aminotransferase 2 (AtGGT2) (EC 2.6.1.4) (Alanine aminotransferase GGT2) (EC 2.6.1.2) (Alanine--glyoxylate aminotransferase GGT2) (EC 2.6.1.44) (Alanine-2-oxoglutarate aminotransferase 2) (EC 2.6.1.-),Glutamate--glyoxylate aminotransferase 1 (AtGGT2) (EC 2.6.1.4) (Alanine aminotransferase GGT1) (EC 2.6.1.2) (Alanine--glyoxylate aminotransferase GGT1) (EC 2.6.1.44) (Alanine-2-oxoglutarate aminotransferase 1) (EC 2.6.1.-) DISRUPTION PHENOTYPE: Reduced growth. Loss of alanine aminotransferase activity and increased light sensitivity alleviated by addition of sucrose and rescued by high CO(2). Higher H(2)O(2) levels in light conditions. Greater root growth in low water potential and upon NaCl-stress. {ECO:0000269|PubMed:12631323, ECO:0000269|PubMed:17318317}. ABA-regulated seed germination was unaffected under the experimental conditions used.,Although ggt1-1 did not affect cold tolerance of plants kept in the dark mutant plants subjected to cold and light treatment exhibited severe leaf chlorosis. This light sensitivity of ggt1-1 could be alleviated either by reduced light intensity or by growth on media containing sucrose.,In the absence of ABA treatment root elongation of ggt1-1 was reduced nearly 50% compared to wild-type.,Mutant leaves were stained with NBT or DAB: the results indicated an increased level of H2O2 but little difference in O2- . This difference in H2O2 was further investigated by quantitative determination of seedling H2O2 using an Amplex Red assay. Light grown ggt1-1 seedlings but not dark grown seedlings had increased levels of H2O2 relative to wild-type.,Mutant plants had a pale green color and grew more slowly than wild-type.,Proline accumulation was higher in untreated ggt1-1 seedlings and also increased to a higher than wild-type level upon ABA treatment.,The mutant shows a reduction in ABA-responsive RD29A expression. In ggt1-1 expression of RD29A:LUC was approximately one-third of the wild-type level at 3 h after application of 100 μM ABA.,Same phenotype as ggt1-1. Pale green; Slow growth; Severe leaf chlorosis at low temperature-J. Zhu-2007 FUNCTION: Catalyzes the Glu:glyoxylate aminotransferase (GGT), Ala:glyoxylate aminotransferase (AGT), Ala:2-oxoglutarate aminotransferase (AKT) and Glu:pyruvate aminotransferase (GPT) reactions in peroxisomes. {ECO:0000269|PubMed:12529529}.,FUNCTION: Catalyzes the glutamate:glyoxylate (GGT or GGAT), alanine:glyoxylate (AGT), alanine:2-oxoglutarate (AKT) and glutamate:pyruvate (GPT) aminotransferase reactions in peroxisomes. Required for abscisic acid (ABA)- and stress-mediated responses in an H(2)O(2)-dependent manner. Function as a photorespiratory aminotransferase that modulates amino acid content during photorespiration (GGAT activity); promotes serine, glycine and citrulline metabolism in response to light. {ECO:0000269|PubMed:12529529, ECO:0000269|PubMed:12631323, ECO:0000269|PubMed:16950862, ECO:0000269|PubMed:17318317}. PATHWAY: Photosynthesis; C4 acid pathway.; PATHWAY: Amino-acid degradation; L-alanine degradation via transaminase pathway; pyruvate from L-alanine: step 1/1.,PATHWAY: Amino-acid biosynthesis; glycine biosynthesis; glycine from glyoxylate: step 1/1.; PATHWAY: Photosynthesis; C4 acid pathway.; PATHWAY: Amino-acid degradation; L-alanine degradation via transaminase pathway; pyruvate from L-alanine: step 1/1. MetaCyc:AT1G70580-MONOMER;,MetaCyc:AT1G23310-MONOMER; R-ATH-70614; 2.6.1.44;,2.3.2.2; 2.6.1.4; 2.6.1.2; 2.6.1.44; 2.6.1.- 53444,53301 Glutamate--glyoxylate aminotransferase 2 (AtGGT2) (EC 2.6.1.4) (Alanine aminotransferase GGT2) (EC 2.6.1.2) (Alanine--glyoxylate aminotransferase GGT2) (EC 2.6.1.44) (Alanine-2-oxoglutarate aminotransferase 2) (EC 2.6.1.-),Glutamate--glyoxylate aminotransferase 1 (AtGGT2) (EC 2.6.1.4) (Alanine aminotransferase GGT1) (EC 2.6.1.2) (Alanine--glyoxylate aminotransferase GGT1) (EC 2.6.1.44) (Alanine-2-oxoglutarate aminotransferase 1) (EC 2.6.1.-) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; peroxisome [GO:0005777]; alanine-glyoxylate transaminase activity [GO:0008453]; glycine:2-oxoglutarate aminotransferase activity [GO:0047958]; L-alanine:2-oxoglutarate aminotransferase activity [GO:0004021]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; L-alanine catabolic process [GO:0042853],apoplast [GO:0048046]; chloroplast [GO:0009507]; membrane [GO:0016020]; peroxisome [GO:0005777]; vacuole [GO:0005773]; alanine-glyoxylate transaminase activity [GO:0008453]; glycine:2-oxoglutarate aminotransferase activity [GO:0047958]; L-alanine:2-oxoglutarate aminotransferase activity [GO:0004021]; pyridoxal phosphate binding [GO:0030170]; glycine biosynthetic process [GO:0006545]; L-alanine catabolic process [GO:0042853]; photorespiration [GO:0009853]; response to hypoxia [GO:0001666] TISSUE SPECIFICITY: Expressed at low levels in seedlings, leaves, flowers, roots, and green siliques. {ECO:0000269|PubMed:12529529, ECO:0000269|PubMed:12631323}.,TISSUE SPECIFICITY: Mostly expressed in leaves, and, to a lower extent, in shoots, stems, flowers, seedlings and green siliques. {ECO:0000269|PubMed:12529529, ECO:0000269|PubMed:12631323, ECO:0000269|PubMed:17319845}. locus:2026841;,locus:2028000; AT1G70580,AT1G23310 aminotransferase Os07g0108300 protein (Putative alanine aminotransferase) (cDNA clone:J013118J02, full insert sequence),Os07g0108300 protein (Fragment) Q69UU3,A0A0P0X1V6 Q69UU3_ORYSJ,A0A0P0X1V6_ORYSJ P0585H11.115 Os07g0108300 OsJ_22816 OSNPB_070108300,Os07g0108300 OSNPB_070108300 ENOG411DQB1 RPS3AA,RPS3AB Q9CAV0,Q42262 RS3A1_ARATH,RS3A2_ARATH 40S ribosomal protein S3a-1,40S ribosomal protein S3a-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 29851,29803 40S ribosomal protein S3a-1,40S ribosomal protein S3a-2 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255] locus:2114840;,locus:2139574; AT3G04840,AT4G34670 40S ribosomal protein S3a 40S ribosomal protein S3a (CYC07 protein),40S ribosomal protein S3a,Os02g0287000 protein (Fragment),Os03g0200500 protein (Fragment) P49397,Q6K8B8,Q0INR5,A0A0P0VHP9,A0A0P0VUA6 RS3A_ORYSJ,Q6K8B8_ORYSJ,Q0INR5_ORYSJ,A0A0P0VHP9_ORYSJ,A0A0P0VUA6_ORYSJ RPS3A CYC07 T151 Os03g0200500 LOC_Os03g10340 OsJ_09804,Os02g0287000 Os02g0287000 OJ1115_D03.49 OJ1756_H07.11 OSNPB_020287000,Os12g0406200 LOC_Os12g21798 Os12g0406200 OSNPB_120406200,Os02g0287000 OSNPB_020287000,Os03g0200500 OSNPB_030200500 ENOG411DQB0 Q94KE1,O22285 PMTA_ARATH,PMTB_ARATH Probable methyltransferase PMT10 (EC 2.1.1.-),Probable methyltransferase PMT11 (EC 2.1.1.-) 2.1.1.- 74448,78369 Probable methyltransferase PMT10 (EC 2.1.1.-),Probable methyltransferase PMT11 (EC 2.1.1.-) cytoplasm [GO:0005737]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2195955;,locus:2063947; AT1G77260,AT2G39750 Methyltransferase Ankyrin-like protein (Os01g0846600 protein) (cDNA clone:J023041I24, full insert sequence),Os01g0846600 protein (Fragment) Q941U5,A0A0P0VAF1 Q941U5_ORYSJ,A0A0P0VAF1_ORYSJ Os01g0846600 Os01g0846600 OsJ_04065 OSNPB_010846600 P0005H10.3 P0446B05.31,Os01g0846600 OSNPB_010846600 ENOG411DQBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Diacylglycerol acyltransferase Os01g0361700 protein (Fragment) Q0JMU0 Q0JMU0_ORYSJ Os01g0361700 Os01g0361700 OSNPB_010361700 ENOG411DQBX TRN1 Q8H0U4,Q1PF58,A0A1P8AX06,F4IMD5 TNPO1_ARATH,Q1PF58_ARATH,A0A1P8AX06_ARATH,F4IMD5_ARATH Transportin-1 (AtTRN1) (Importin beta-2) (Karyopherin beta-2),ARM repeat superfamily protein (Importin beta-2 subunit family protein),Transportin (Fragment),ARM repeat superfamily protein FUNCTION: Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the glycine-rich RNA-binding RBG7 and mediates its nuclear import. {ECO:0000250, ECO:0000269|PubMed:14756317}. 99109,57009,6757,62253 Transportin-1 (AtTRN1) (Importin beta-2) (Karyopherin beta-2),ARM repeat superfamily protein (Importin beta-2 subunit family protein),Transportin (Fragment),ARM repeat superfamily protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; miRNA loading onto RISC involved in gene silencing by miRNA [GO:0035280]; NLS-bearing protein import into nucleus [GO:0006607]; nuclear import [GO:0051170]; protein import into nucleus, translocation [GO:0000060]; ribosomal protein import into nucleus [GO:0006610] locus:2039410;,locus:2039420; AT2G16950,AT2G16960 Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring Ran- dependent mechanism. At the nucleoplasmic side of the NPC Ran binds to the importin the importin substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity) Transportin-1 (OsTRN1) (Importin beta-2) (Karyopherin beta-2),Os04g0691500 protein B9FDR3,A0A0N7KJZ4,A0A0P0WGR2 TNPO1_ORYSJ,A0A0N7KJZ4_ORYSJ,A0A0P0WGR2_ORYSJ TRN1 Os04g0691500 LOC_Os04g59494 OsJ_16737,Os04g0691500 OSNPB_040691500 FUNCTION: Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). {ECO:0000250}. ENOG411DQBW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 6a (OsTIFY6a) (Jasmonate ZIM domain-containing protein 3) (OsJAZ3) (OsJAZ9),Os12g0609200 protein (Fragment),Os08g0428400 protein (Fragment) Q6ZJU3,Q0IM04,A0A0N7KPW2 TIF6A_ORYSJ,Q0IM04_ORYSJ,A0A0N7KPW2_ORYSJ TIFY6A JAZ3 Os08g0428400 LOC_Os08g33160 OJ1663_D06.22 OsJ_27393,Os12g0609200 Os12g0609200 OSNPB_120609200,Os08g0428400 OSNPB_080428400 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411DQBU MED12 H3K2Y6 MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 (Protein CENTER CITY) (Protein CRYPTIC PRECOCIOUS) DISRUPTION PHENOTYPE: Abnormal embryo and cotyledon development, and embryo lethality in some cases. When viable, plants are small, with abnormal leaf shape and vascular patterning, ectopic bract-like organs and greatly delayed flowering time and sterile flowers. {ECO:0000269|PubMed:20023166, ECO:0000269|PubMed:22247249}. Uncoupling of growth and pattern formation in early embryogenesis. Patterning is delayed by several days after which radial patterning beings in a remarkably normal manner. Reduced fertility; Large SAM-R. Poethig-2010 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Flowering regulator which suppresses FLC expression, promotes FT and TSF expression and up-regulates SOC1 and FUL mainly in an FT-dependent manner under long-day conditions. Involved in diverse developmental aspects through gene regulation and modulation of the auxin response. Acts closely together with MAB13. Involved in the regulation of embryo patterning and cotyledon organogenesis by transiently repressing a transcriptional program that interferes with this process. {ECO:0000269|PubMed:20023166, ECO:0000269|PubMed:22247249}. 247227 Mediator of RNA polymerase II transcription subunit 12 (Protein CENTER CITY) (Protein CRYPTIC PRECOCIOUS) mediator complex [GO:0016592]; nucleus [GO:0005634]; RNA polymerase II transcription cofactor activity [GO:0001104]; multicellular organism development [GO:0007275]; regulation of development, heterochronic [GO:0040034]; regulation of growth [GO:0040008]; regulation of radial pattern formation [GO:0090213]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed first at the dermatogen stage of embryogenesis and then in all cells of the embryo and suspensor through the globular stage. Decreases in the periphery of the hypocotyl and on the abaxial side of cotyledons from the heart stage to the torpedo stage, and by the bent cotyledon stage, restricted to the vascular tissue and the shoot and root apical meristems. {ECO:0000269|PubMed:20023166}. TISSUE SPECIFICITY: Ubiquitous. Higher expression in vascular tissue, shoot apex and developing floral organs. {ECO:0000269|PubMed:22247249}. locus:2126056; AT4G00450 Transcription mediator complex subunit Med12 Os10g0550100 protein (Fragment),Os07g0648266 protein,Os07g0648300 protein (Fragment),Os10g0550066 protein (Fragment) Q0IVW3,A0A0P0X9Z1,A0A0P0XA26,A0A0N7KS64 Q0IVW3_ORYSJ,A0A0P0X9Z1_ORYSJ,A0A0P0XA26_ORYSJ,A0A0N7KS64_ORYSJ Os10g0550100 OSNPB_100550100,Os07g0648266 OSNPB_070648266,Os07g0648300 OSNPB_070648300,Os10g0550066 OSNPB_100550066 ENOG411DQBS Q9ZUM0 C3H17_ARATH Zinc finger CCCH domain-containing protein 17 (AtC3H17) 75832 Zinc finger CCCH domain-containing protein 17 (AtC3H17) DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729] locus:2051683; AT2G02160 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 19 (OsC3H19),Os02g0831100 protein (Fragment) Q6K977,A0A0P0VS07 C3H19_ORYSJ,A0A0P0VS07_ORYSJ Os02g0831100 LOC_Os02g58440 OJ1149_C12.8 OsJ_008677,Os02g0831100 OSNPB_020831100 ENOG411DQBR ALDH2B7,ALDH2B4 Q8S528,Q9SU63,A0A1P8AQG6 AL2B7_ARATH,AL2B4_ARATH,A0A1P8AQG6_ARATH Aldehyde dehydrogenase family 2 member B7, mitochondrial (ALDH2b) (EC 1.2.1.3),Aldehyde dehydrogenase family 2 member B4, mitochondrial (ALDH2a) (EC 1.2.1.3),Aldehyde dehydrogenase 2B7 FUNCTION: Possesses activity on acetaldehyde and glycolaldehyde in vitro. {ECO:0000269|PubMed:11999848}. ARA:AT1G23800-MONOMER;,ARA:AT3G48000-MONOMER; R-ATH-380612;R-ATH-5365859;R-ATH-70350;R-ATH-71384; 1.2.1.3 58153,58589,44479 Aldehyde dehydrogenase family 2 member B7, mitochondrial (ALDH2b) (EC 1.2.1.3),Aldehyde dehydrogenase family 2 member B4, mitochondrial (ALDH2a) (EC 1.2.1.3),Aldehyde dehydrogenase 2B7 mitochondrial matrix [GO:0005759]; aldehyde dehydrogenase (NAD) activity [GO:0004029],chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; ATP binding [GO:0005524]; response to cadmium ion [GO:0046686],oxidoreductase activity [GO:0016491] locus:2034855;,locus:2097845; AT1G23800,AT3G48000 Aldehyde dehydrogenase Aldehyde dehydrogenase ALDH2b (Os06g0270900 protein) (cDNA clone:J013051L04, full insert sequence) (cDNA clone:J013116E11, full insert sequence) (cDNA clone:J033005P04, full insert sequence),Os06g0270900 protein (Fragment) Q9FRX7,A0A0P0WVJ1 Q9FRX7_ORYSJ,A0A0P0WVJ1_ORYSJ Aldh2b Os06g0270900 OsJ_20928 OSJNBa0084K06.38 OSNPB_060270900,Os06g0270900 OSNPB_060270900 ENOG411DQBQ KNAT7 Q9FPQ8 KNAT7_ARATH Homeobox protein knotted-1-like 7 (Protein IRREGULAR XYLEM 11) (Protein KNAT7) No visible root phenotype. Abnormal xylem-S. Turner-2005 FUNCTION: May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. 32908 Homeobox protein knotted-1-like 7 (Protein IRREGULAR XYLEM 11) (Protein KNAT7) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; mucilage biosynthetic process [GO:0010192]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of secondary cell wall biogenesis [GO:2000652]; xylem development [GO:0010089] locus:2015554; AT1G62990 Homeobox protein knotted-1-like Homeobox protein knotted-1-like 3 (Homeobox protein HOS66),Os03g0123500 protein (Fragment) Q94LW3,A0A0P0VSF1 KNOS3_ORYSJ,A0A0P0VSF1_ORYSJ HOS66 Os03g0123500 LOC_Os03g03164 OJ1126B12.15/OJ1126B12.16 OsJ_008895 OsJ_008896 OsJ_09228,Os03g0123500 OSNPB_030123500 ENOG411DQBP MKD15.11 Q8LAD2,P68209,A0A1P8BEZ0,B3H632 SUCA2_ARATH,SUCA1_ARATH,A0A1P8BEZ0_ARATH,B3H632_ARATH Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha-2) (SCS-alpha-2),Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha-1) (SCS-alpha-1),Succinyl-CoA ligase, alpha subunit,Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) FUNCTION: Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. {ECO:0000255|HAMAP-Rule:MF_03222}.,FUNCTION: Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. {ECO:0000256|HAMAP-Rule:MF_03222}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1. {ECO:0000255|HAMAP-Rule:MF_03222}.,PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1. {ECO:0000256|HAMAP-Rule:MF_03222}. ARA:AT5G23250-MONOMER;,ARA:AT5G08300-MONOMER; R-ATH-71403; 6.2.1.5 35317,36152,26615,30704 Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha-2) (SCS-alpha-2),Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha-1) (SCS-alpha-1),Succinyl-CoA ligase, alpha subunit,Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; cofactor binding [GO:0048037]; copper ion binding [GO:0005507]; nucleotide binding [GO:0000166]; succinate-CoA ligase (ADP-forming) activity [GO:0004775]; succinate-CoA ligase (GDP-forming) activity [GO:0004776]; tricarboxylic acid cycle [GO:0006099],cell wall [GO:0005618]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; cofactor binding [GO:0048037]; copper ion binding [GO:0005507]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; succinate-CoA ligase (ADP-forming) activity [GO:0004775]; succinate-CoA ligase (GDP-forming) activity [GO:0004776]; response to cadmium ion [GO:0046686]; tricarboxylic acid cycle [GO:0006099],cofactor binding [GO:0048037]; ligase activity [GO:0016874]; metabolic process [GO:0008152],mitochondrion [GO:0005739]; cofactor binding [GO:0048037]; nucleotide binding [GO:0000166]; succinate-CoA ligase (ADP-forming) activity [GO:0004775]; tricarboxylic acid cycle [GO:0006099] locus:2166756;,locus:2150773; AT5G23250,AT5G08300 Succinyl-coa ligase Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) Q6ZL94 SUCA_ORYSJ Os07g0577700 LOC_Os07g38970 OJ1065_B06.20 OsJ_24862 FUNCTION: Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. {ECO:0000255|HAMAP-Rule:MF_03222}. ENOG411DQBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0446900 protein,Os10g0543700 protein Q67UE4,A0A0P0XWW1 Q67UE4_ORYSJ,A0A0P0XWW1_ORYSJ OJ1596_C06.4 Os09g0446900 OSNPB_090446900,Os10g0543700 OSNPB_100543700 ENOG411DQBK CLC-F Q8RXR2 CLCF_ARATH Chloride channel protein CLC-f (AtCLC-f) (CBS domain-containing protein CBSCLC1) FUNCTION: Voltage-gated chloride channel. 83549 Chloride channel protein CLC-f (AtCLC-f) (CBS domain-containing protein CBSCLC1) chloride channel complex [GO:0034707]; chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; voltage-gated chloride channel activity [GO:0005247] locus:2020542; AT1G55620 chloride channel Chloride channel protein Q6Z673,Q6ZKN1 Q6Z673_ORYSJ,Q6ZKN1_ORYSJ Os02g0720700 Os02g0720700 OJ1008_D06.20 OsJ_08177 OSNPB_020720700 P0654B04.5,Os08g0499200 Os08g0499200 OJ1118_A06.1 OSNPB_080499200 ENOG411DQBI SYNC2,NS2 Q9SW95,A0A1I9LPQ1 SYNC2_ARATH,A0A1I9LPQ1_ARATH Asparagine--tRNA ligase, cytoplasmic 2 (EC 6.1.1.22) (Asparaginyl-tRNA synthetase 2) (AsnRS 2) (AtNS2),Asparaginyl-tRNA synthetase 2 ARA:AT3G07420-MONOMER; 6.1.1.22 71364,60699 Asparagine--tRNA ligase, cytoplasmic 2 (EC 6.1.1.22) (Asparaginyl-tRNA synthetase 2) (AsnRS 2) (AtNS2),Asparaginyl-tRNA synthetase 2 chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; asparagine-tRNA ligase activity [GO:0004816]; ATP binding [GO:0005524]; asparaginyl-tRNA aminoacylation [GO:0006421],aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; tRNA aminoacylation for protein translation [GO:0006418] locus:2079646; AT3G07420 Asparaginyl-tRNA synthetase Os12g0414500 protein (tRNA synthetases class II family protein, expressed) Q2QSX5 Q2QSX5_ORYSJ Os12g0414500 LOC_Os12g22600 Os12g0414500 OsJ_35868 OSNPB_120414500 ENOG411DQBH UNE1 Q9SKY7,Q9MAG4,Q9LKB7,Q84JK4,Q2V3V8,Q9LP57 Q9SKY7_ARATH,Q9MAG4_ARATH,Q9LKB7_ARATH,Q84JK4_ARATH,Q2V3V8_ARATH,Q9LP57_ARATH At2g32130 (Intracellular protein transporter, putative (DUF641)) (Uncharacterized protein At2g32130),At1g53380 (F12M16.27),AT3G14870 protein,Uncharacterized protein At3g14870,F28N24.3 protein (Intracellular protein transporter, putative (DUF641)) 17697,52280,54738,54252,54383,51427 At2g32130 (Intracellular protein transporter, putative (DUF641)) (Uncharacterized protein At2g32130),At1g53380 (F12M16.27),AT3G14870 protein,Uncharacterized protein At3g14870,F28N24.3 protein (Intracellular protein transporter, putative (DUF641)) double fertilization forming a zygote and endosperm [GO:0009567] locus:2045442;,locus:2009670;,locus:2086365;,locus:2030012; AT2G32130,AT1G53380,AT3G14870,AT1G29300 Plant protein of unknown function (DUF641) NA NA NA NA NA NA NA ENOG411DQBG Q9LFM6 PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310, mitochondrial 68337 Pentatricopeptide repeat-containing protein At5g11310, mitochondrial cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; regulation of seed germination [GO:0010029]; RNA modification [GO:0009451]; seed germination [GO:0009845] locus:2147947; AT5G11310 Pentatricopeptide repeat-containing protein Leaf protein-like (Os01g0506100 protein) (cDNA clone:J033091P06, full insert sequence) Q5QN90 Q5QN90_ORYSJ Os01g0506100 OSNPB_010506100 P0436D06.45 ENOG411DQBF BZIP68,BZIP16 Q84LG2,Q501B2 BZP68_ARATH,BZP16_ARATH bZIP transcription factor 68 (AtbZIP68),bZIP transcription factor 16 (AtbZIP16) FUNCTION: Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.,FUNCTION: Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. 40868,43109 bZIP transcription factor 68 (AtbZIP68),bZIP transcription factor 16 (AtbZIP16) nucleus [GO:0005634]; identical protein binding [GO:0042802]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; identical protein binding [GO:0042802]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] locus:2031705;,locus:2062455; AT1G32150,AT2G35530 Transcription factor BZIP transcription factor family protein, expressed (Os12g0233800 protein) (cDNA clone:J013039C04, full insert sequence) (cDNA clone:J023123F07, full insert sequence) Q2QVD6 Q2QVD6_ORYSJ Os12g0233800 LOC_Os12g13170 OSNPB_120233800 ENOG411DQBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Os06g0730000 protein (Fragment) Q0D9A6 Q0D9A6_ORYSJ Os06g0730000 Os06g0730000 OSNPB_060730000 ENOG411DQBC AT1G61240.1,AT4G12840.1,AT1G11170.1 Q8GYU5,B3LFC6,Q8S9J5,A0A1P8AR16,A0A1P8AQH7,A0A1P8B5M6,A0A1P8AQF5,A0A1P8AR15,A0A1P8AR12,A0A1P8B5Y1,A0A1P8B5N9,F4JRH1,F4I7E3,F4JRK4 Q8GYU5_ARATH,B3LFC6_ARATH,Q8S9J5_ARATH,A0A1P8AR16_ARATH,A0A1P8AQH7_ARATH,A0A1P8B5M6_ARATH,A0A1P8AQF5_ARATH,A0A1P8AR15_ARATH,A0A1P8AR12_ARATH,A0A1P8B5Y1_ARATH,A0A1P8B5N9_ARATH,F4JRH1_ARATH,F4I7E3_ARATH,F4JRK4_ARATH At1g61240 (Lysine ketoglutarate reductase trans-splicing-like protein) (Lysine ketoglutarate reductase trans-splicing-like protein (DUF707)) (Uncharacterized protein At1g61240/F11P17_22),At4g12840 (GTPase Der) (GTPase Der (DUF707)),At1g11170/T28P6_16 (Lysine ketoglutarate reductase trans-splicing-like protein) (Lysine ketoglutarate reductase trans-splicing-like protein (DUF707)),Lysine ketoglutarate reductase trans-splicing-like protein (DUF707),Lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707),GTPase Der (DUF707) 49120,45276,50647,39676,41200,35987,41742,29849,42671,34769,44645,45195,38831,45177 At1g61240 (Lysine ketoglutarate reductase trans-splicing-like protein) (Lysine ketoglutarate reductase trans-splicing-like protein (DUF707)) (Uncharacterized protein At1g61240/F11P17_22),At4g12840 (GTPase Der) (GTPase Der (DUF707)),At1g11170/T28P6_16 (Lysine ketoglutarate reductase trans-splicing-like protein) (Lysine ketoglutarate reductase trans-splicing-like protein (DUF707)),Lysine ketoglutarate reductase trans-splicing-like protein (DUF707),Lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707),GTPase Der (DUF707) transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2008425;,locus:2135733;,locus:2202124;,locus:2124608; AT1G61240,AT4G12840,AT1G11170,AT4G18530 Lysine ketoglutarate reductase trans-splicing related 1 Os07g0564800 protein (Putative lysine ketoglutarate reductase trans-splicing related 1) (cDNA clone:J023123N13, full insert sequence),Os06g0731900 protein (Putative lysine ketoglutarate reductase trans-splicing related 1) (cDNA clone:002-105-D01, full insert sequence),Lysine ketoglutarate reductase trans-splicing related 1-like (Os01g0919600 protein) (cDNA clone:J013066P10, full insert sequence),Os06g0731900 protein (Putative lysine ketoglutarate reductase trans-splicing related 1) (cDNA clone:J033024G18, full insert sequence),Os01g0919600 protein (Fragment) Q7XIK6,Q5Z401,Q5JLN0,Q5Z400,A0A0P0VC10 Q7XIK6_ORYSJ,Q5Z401_ORYSJ,Q5JLN0_ORYSJ,Q5Z400_ORYSJ,A0A0P0VC10_ORYSJ OJ1773_H01.102 OJ1112_E08.121 Os07g0564800 OSNPB_070564800,B1206D04.27-1 Os06g0731900 OSNPB_060731900,Os01g0919600 Os01g0919600 OSNPB_010919600 P0678F11.25,B1206D04.27-2 Os06g0731900 OSNPB_060731900,Os01g0919600 OSNPB_010919600 ENOG411DQBB KIN14Q,KIN14R F4IBQ9,F4IJK6,A0A1P8AN70,A0A1P8AN53,A0A1P8B002 KN14Q_ARATH,KN14R_ARATH,A0A1P8AN70_ARATH,A0A1P8AN53_ARATH,A0A1P8B002_ARATH Kinesin-like protein KIN-14Q,Kinesin-like protein KIN-14R,Di-glucose binding protein with Kinesin motor domain-containing protein ARA:GQT-1354-MONOMER; 134254,122922,135629,135700,123033 Kinesin-like protein KIN-14Q,Kinesin-like protein KIN-14R,Di-glucose binding protein with Kinesin motor domain-containing protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2207011;,locus:2066030; AT1G72250,AT2G22610 kinesin motor Kinesin-like protein KIN-14E,Kinesin-like protein KIN-14R,Os02g0609800 protein,Os02g0213450 protein B9FAF3,Q2QM62,A0A0P0VLM3,A0A0P0VGD8 KN14E_ORYSJ,KN14R_ORYSJ,A0A0P0VLM3_ORYSJ,A0A0P0VGD8_ORYSJ KIN14E Os03g0114000 LOC_Os03g02290 OsJ_09155 OSJNBa0090O10.9,KIN14R Os12g0616000 LOC_Os12g42160 OsJ_36881,Os02g0609800 OSNPB_020609800,Os02g0213450 OSNPB_020213450 ENOG411DQBA HEB1 A0A1P8ATM6,F4I8B3 A0A1P8ATM6_ARATH,F4I8B3_ARATH ARM repeat superfamily protein R-ATH-2299718; 137326,134110 ARM repeat superfamily protein nucleus [GO:0005634],mitochondrion [GO:0005739]; nucleus [GO:0005634] locus:2010901; AT1G64960 Condensin II non structural maintenance of chromosomes subunit Os03g0616500 protein A0A0P0W0S0 A0A0P0W0S0_ORYSJ Os03g0616500 OSNPB_030616500 ENOG411EK5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rADc Os02g0122800 protein (Putative arginine/serine-rich splicing factor RSp41) (cDNA clone:J023126J16, full insert sequence),rRNA adenine N(6)-methyltransferase (EC 2.1.1.-) (Fragment),Os02g0122800 protein Q6Z725,C7IYB7,A0A0P0VE15 Q6Z725_ORYSJ,C7IYB7_ORYSJ,A0A0P0VE15_ORYSJ P0575F10.6-1 Os02g0122800 OSNPB_020122800,Os02g0122900 Os02g0122900 OSNPB_020122900,Os02g0122800 OSNPB_020122800 ENOG411EDA5 Q9CAE9,Q9SVJ9 FBK53_ARATH,FBK95_ARATH Putative F-box/kelch-repeat protein At3g10510,F-box/kelch-repeat protein At4g38940 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 42324,42073 Putative F-box/kelch-repeat protein At3g10510,F-box/kelch-repeat protein At4g38940 nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:2075795;,locus:2120262; AT3G10510,AT4G38940 kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EDA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EDA7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plug domain of Sec61p Os09g0347700 protein (Putative Sec61 alpha form 2) (Sec 61 alpha) (Sec 61 alpha form 2) (cDNA clone:J023107A15, full insert sequence),Os03g0213100 protein (Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed),Os09g0347500 protein (Fragment),Os03g0213100 protein (Fragment) Q6ES11,Q10Q18,Q0J2F7,A0A0P0VUM8 Q6ES11_ORYSJ,Q10Q18_ORYSJ,Q0J2F7_ORYSJ,A0A0P0VUM8_ORYSJ Os09g0347700 Os09g0347700 OsJ_29000 OSNPB_090347700 P0512H04.21 P0698G06.1,Os03g0213100 LOC_Os03g11440 Os03g0213100 OSNPB_030213100,Os09g0347500 OSNPB_090347500,Os03g0213100 OSNPB_030213100 ENOG411EDA0 AMC6 O64519 MCA6_ARATH Metacaspase-6 (AtMC6) (EC 3.4.22.-) (Metacaspase 2c) (AtMCP2c) (Metacaspase-5) 3.4.22.- 40242 Metacaspase-6 (AtMC6) (EC 3.4.22.-) (Metacaspase 2c) (AtMCP2c) (Metacaspase-5) cysteine-type peptidase activity [GO:0008234] TISSUE SPECIFICITY: Expressed in roots and flower buds. {ECO:0000269|PubMed:21395887}. locus:2207440; AT1G79320 Caspase domain NA NA NA NA NA NA NA ENOG411EDA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_TTF NA NA NA NA NA NA NA ENOG411EDA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class Os12g0551900 protein,Os07g0267400 protein (Fragment),Os11g0646232 protein A0A0P0YBA3,A0A0P0X517,A0A0P0Y578 A0A0P0YBA3_ORYSJ,A0A0P0X517_ORYSJ,A0A0P0Y578_ORYSJ Os12g0551900 OSNPB_120551900,Os07g0267400 OSNPB_070267400,Os11g0646232 OSNPB_110646232 ENOG411EHU9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUE AGP25 Q6NN00 AGP25_ARATH Classical arabinogalactan protein 25 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 11851 Classical arabinogalactan protein 25 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2180039; AT5G18690 NA NA NA NA NA NA NA NA ENOG411EHUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EHUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1070) NA NA NA NA NA NA NA ENOG411EHUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0109066 protein,Os01g0615400 protein A0A0P0XQU7,A0A0P0V591 A0A0P0XQU7_ORYSJ,A0A0P0V591_ORYSJ Os10g0109066 OSNPB_100109066,Os01g0615400 OSNPB_010615400 ENOG411EHUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0324700 protein (cDNA clone:001-117-H10, full insert sequence) Q5W6T6 Q5W6T6_ORYSJ Os05g0324700 OSNPB_050324700 P0018A03.13 ENOG411EHUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0142600 protein (cDNA clone:001-107-H06, full insert sequence) Q0D8N7 Q0D8N7_ORYSJ Os07g0142600 Os07g0142600 OSNPB_070142600 ENOG411EHUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0834800 protein Q5QMG1 Q5QMG1_ORYSJ Os01g0834800 OSNPB_010834800 P0460C04.41 P0506B12.8 ENOG411EHUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NOL1/NOP2/sun family NA NA NA NA NA NA NA ENOG411EDAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Os07g0448400 protein (Fragment) Q0D6R5 Q0D6R5_ORYSJ Os07g0448400 Os07g0448400 OSNPB_070448400 ENOG411EDAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beta-lactamase NA NA NA NA NA NA NA ENOG411DUVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0120900 protein (cDNA clone:J033105I05, full insert sequence) Q60F50 Q60F50_ORYSJ Os05g0120900 OJ1001_G01.2 OsJ_16930 OSNPB_050120900 ENOG411EDAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vps5 C terminal like NA NA NA NA NA NA NA ENOG411EDAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PhoD-like phosphatase NA NA NA NA NA NA NA ENOG411EDAE APR2 P92981,F4HX50 APR2_ARATH,F4HX50_ARATH 5'-adenylylsulfate reductase 2, chloroplastic (EC 1.8.4.9) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 43) (PAPS reductase homolog 43) (Prh-43) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 2) (APS sulfotransferase 2) (Thioredoxin-independent APS reductase 2),5'adenylylphosphosulfate reductase 2 mutant accumulated 2.5 times more sulfate than the wild type Elevated sulfate levels-F. Daniel-Vedele-2007 FUNCTION: Reduces sulfate for Cys biosynthesis. Substrate preference is adenosine-5'-phosphosulfate (APS) >> 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Uses glutathione or DTT as source of protons. {ECO:0000269|PubMed:11553635}. MetaCyc:AT1G62180-MONOMER; 1.8.4.9 50656,49927 5'-adenylylsulfate reductase 2, chloroplastic (EC 1.8.4.9) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 43) (PAPS reductase homolog 43) (Prh-43) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 2) (APS sulfotransferase 2) (Thioredoxin-independent APS reductase 2),5'adenylylphosphosulfate reductase 2 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; adenylyl-sulfate reductase (glutathione) activity [GO:0033741]; adenylyl-sulfate reductase activity [GO:0009973]; phosphoadenylyl-sulfate reductase (thioredoxin) activity [GO:0004604]; cell redox homeostasis [GO:0045454]; cysteine biosynthetic process [GO:0019344]; sulfate assimilation [GO:0000103]; sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [GO:0019379],cell [GO:0005623]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; cell redox homeostasis [GO:0045454]; sulfate reduction [GO:0019419] TISSUE SPECIFICITY: Leaves and stem. locus:2018097; AT1G62180 Phosphoadenosine phosphosulfate reductase family NA NA NA NA NA NA NA ENOG411EDAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0112700 protein (Fragment) Q0IZB0 Q0IZB0_ORYSJ Os10g0112700 OSNPB_100112700 ENOG411EDAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0218600 protein (Fragment) A0A0P0W7H6 A0A0P0W7H6_ORYSJ Os04g0218600 OSNPB_040218600 ENOG411E9J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTP-binding protein TrmE N-terminus NA NA NA NA NA NA NA ENOG411E9J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E9J6 Q7XA77,F4IEX9 SINL5_ARATH,F4IEX9_ARATH E3 ubiquitin-protein ligase SINA-like 5 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 5) (Seven in absentia-like protein 5),E3 ubiquitin-protein ligase (EC 2.3.2.27) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates. {ECO:0000250}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|RuleBase:RU201113}. R-ATH-5689880;R-ATH-983168; 2.3.2.27 37320,39554 E3 ubiquitin-protein ligase SINA-like 5 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 5) (Seven in absentia-like protein 5),E3 ubiquitin-protein ligase (EC 2.3.2.27) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2033354; AT1G66660 Seven in absentia protein family NA NA NA NA NA NA NA ENOG411E9J7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zc3h12a-like Ribonuclease NYN domain NA NA NA NA NA NA NA ENOG411E9J0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411E9J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9J2 SK2,SK1 Q8GY88,Q9SJ05,A8MRG1,F4IIJ2,F4JW33 SK2_ARATH,SK1_ARATH,A8MRG1_ARATH,F4IIJ2_ARATH,F4JW33_ARATH Shikimate kinase 2, chloroplastic (AtSK2) (EC 2.7.1.71),Shikimate kinase 1, chloroplastic (AtSK1) (EC 2.7.1.71),Shikimate kinase 1,Shikimate kinase 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19057671}. FUNCTION: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. {ECO:0000269|PubMed:19057671, ECO:0000269|PubMed:21520319}. MISCELLANEOUS: SK1 forms a homodimer in solution, which may facilitate its relative thermostability when exposed at 37 degrees Celsius. {ECO:0000305|PubMed:21520319}. PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7. ARA:AT4G39540-MONOMER;MetaCyc:AT4G39540-MONOMER;,ARA:AT2G21940-MONOMER;MetaCyc:AT2G21940-MONOMER; 2.7.1.71; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 2.7.1.71 33777,33982,30769,34039,34650 Shikimate kinase 2, chloroplastic (AtSK2) (EC 2.7.1.71),Shikimate kinase 1, chloroplastic (AtSK1) (EC 2.7.1.71),Shikimate kinase 1,Shikimate kinase 2 chloroplast [GO:0009507]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; shikimate kinase activity [GO:0004765]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]; shikimate metabolic process [GO:0019632],chloroplast [GO:0009507]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; shikimate kinase activity [GO:0004765]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423],kinase activity [GO:0016301],chloroplast [GO:0009507]; shikimate kinase activity [GO:0004765]; shikimate metabolic process [GO:0019632] locus:2052586;,locus:2122566; AT4G39540,AT2G21940 Shikimate kinase NA NA NA NA NA NA NA ENOG411E9J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0198300 protein,Os04g0198733 protein A0A0P0W7Q3,A0A0P0W7B5 A0A0P0W7Q3_ORYSJ,A0A0P0W7B5_ORYSJ Os04g0198300 OSNPB_040198300,Os04g0198733 OSNPB_040198733 ENOG411E9J8 SBT2.1 Q9SA75 SBT21_ARATH Subtilisin-like protease SBT2.1 (EC 3.4.21.-) (Subtilase subfamily 2 member 1) (AtSBT2.1) 3.4.21.- 88545 Subtilisin-like protease SBT2.1 (EC 3.4.21.-) (Subtilase subfamily 2 member 1) (AtSBT2.1) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; serine-type endopeptidase activity [GO:0004252] locus:2204619; AT1G30600 Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411E9J9 HMA3 P0CW77,A0A1P8B4Q4 HMA3A_ARATH,A0A1P8B4Q4_ARATH Putative inactive cadmium/zinc-transporting ATPase HMA3 (Putative inactive cadmium/zinc-transporting ATPase 4) (Putative inactive protein HEAVY METAL ATPASE 3),Heavy metal atpase 3 Sensitive to zinc and cadmium-P. Richaud-2009 MetaCyc:MONOMER-14750; 58642,41323 Putative inactive cadmium/zinc-transporting ATPase HMA3 (Putative inactive cadmium/zinc-transporting ATPase 4) (Putative inactive protein HEAVY METAL ATPASE 3),Heavy metal atpase 3 integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; cation-transporting ATPase activity [GO:0019829]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; detoxification of cadmium ion [GO:0071585]; metal ion transport [GO:0030001],integral component of membrane [GO:0016021]; cation-transporting ATPase activity [GO:0019829]; nucleotide binding [GO:0000166] locus:2126500; AT4G30120 E1-E2 ATPase NA NA NA NA NA NA NA ENOG411E9JT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: prolyl 4-hydroxylase NA NA NA NA NA NA NA ENOG411E9JU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9JV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E9JW MPK17.3,MUF9.3 F4K4G7,Q941C9,F4JYY1,F4JWS2 F4K4G7_ARATH,Q941C9_ARATH,F4JYY1_ARATH,F4JWS2_ARATH Pol-like polyprotein/retrotransposon, putative (DUF239),AT5g25410/F18G18_150 (Transmembrane protein, putative (DUF239)),Transmembrane protein, putative (DUF239),Uncharacterized protein 37370,41123,41335,37077 Pol-like polyprotein/retrotransposon, putative (DUF239),AT5g25410/F18G18_150 (Transmembrane protein, putative (DUF239)),Transmembrane protein, putative (DUF239),Uncharacterized protein integral component of membrane [GO:0016021] locus:2147406;locus:2832616;,locus:2145497;,locus:2175103;,locus:505006637; AT5G36680AT5G36770;,AT5G25410,AT5G60380,AT5G25415 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E9JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA polymerase type B organellar and viral NA NA NA NA NA NA NA ENOG411E9JR GATA3 Q8L4M6 GATA3_ARATH GATA transcription factor 3 (AtGATA-3) FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. 30468 GATA transcription factor 3 (AtGATA-3) nucleolus [GO:0005730]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623] TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. locus:2139594; AT4G34680 GATA transcription factor 3 NA NA NA NA NA NA NA ENOG411E9JS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAM-like protein (Os02g0463725 protein) C6F1L2 C6F1L2_ORYSJ Os02g0463725 OSNPB_020463725 ENOG411E9JX EXPA18 Q9LQ07 EXP18_ARATH Expansin-A18 (AtEXPA18) (Alpha-expansin-18) (At-EXP18) (AtEx18) (Ath-ExpAlpha-1.25) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 27870 Expansin-A18 (AtEXPA18) (Alpha-expansin-18) (At-EXP18) (AtEx18) (Ath-ExpAlpha-1.25) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664] locus:2015539; AT1G62980 Pollen allergen NA NA NA NA NA NA NA ENOG411E9JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411E9JZ CSA1,RPS4 F4KIF3,Q9XGM3,Q9FHF0,O49471,A0A1P8B4W0,A0A1P8BFL2 CSA1_ARATH,RPS4C_ARATH,Q9FHF0_ARATH,O49471_ARATH,A0A1P8B4W0_ARATH,A0A1P8BFL2_ARATH Disease resistance-like protein CSA1 (Protein CONSTITUTIVE SHADE-AVOIDANCE 1),Disease resistance protein RPS4 (Resistance to Pseudomonas syringae 4) (TIR-NBS-LRR class disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (TMV resistance protein N-like),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) DISRUPTION PHENOTYPE: Shade avoidance phenotype in the absence of shade and enhanced growth of the bacterial pathogen P.syringae pv. tomato DC3000 (avirulent avrRpt2 strain). The constitutive shade avoidance phenotype can be rescued by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae. {ECO:0000269|PubMed:17114357}.,DISRUPTION PHENOTYPE: Loss of resistance to P.syringae expressing AvrRps4. {ECO:0000269|PubMed:15469494}. Shade avoidance phenotype (long stem) under high red:far-red ratios (i.e. in the absence of a shade signal). Long petioles and erect, pale leaves under high red:far-red light-M. Yanovsky-2006,Resistant to Pseudomonas syringae-B. Staskawicz-1999 FUNCTION: TIR-NB-LRR receptor-like protein that functions in photomorphogenic development. May function downstream of phytochrome B (phyB) signaling. {ECO:0000269|PubMed:17114357}.,FUNCTION: Disease resistance (R) protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The combined presence of both regular and alternative RPS4 transcripts with truncated open reading frames (ORFs) is necessary for function (PubMed:17951452). RPS4 function is regulated at multiple levels, including gene expression, alternative splicing, and protein stability (PubMed:17951452). When over-expressed, confers temperature-conditioned EDS1-dependent auto-immunity (PubMed:24146667). Heterodimerization with RRS1 is required to form a functional complex to recognize AvrRps4 and PopP2 (PubMed:24744375). Abscisic acid deficiency enhances nuclear accumulation of RPS4 and its cell death-inducing activity (PubMed:22454454). {ECO:0000269|PubMed:10571887, ECO:0000269|PubMed:15469494, ECO:0000269|PubMed:22454454, ECO:0000269|PubMed:24146667, ECO:0000269|PubMed:24744375, ECO:0000305|PubMed:17951452, ECO:0000305|PubMed:19519800}. MISCELLANEOUS: MOS12 and the MOS4-associated complex (MAC) are required for the proper splicing of R genes and contribute in the alternative splicing of RPS4. {ECO:0000269|PubMed:22248079}.; MISCELLANEOUS: Only two amino-acid changes (N195D and Y950H) are linked to a change from a resistant strain (cv. Columbia or cv. Landsberg erecta) to a susceptible one (cv. RLD). {ECO:0000269|PubMed:10571887}. 135859,137726,132401,132506,135143,134338 Disease resistance-like protein CSA1 (Protein CONSTITUTIVE SHADE-AVOIDANCE 1),Disease resistance protein RPS4 (Resistance to Pseudomonas syringae 4) (TIR-NBS-LRR class disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (TMV resistance protein N-like),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to bacterium [GO:0042742]; multicellular organism development [GO:0007275]; response to light stimulus [GO:0009416]; response to red light [GO:0010114]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; endomembrane system [GO:0012505]; membrane [GO:0016020]; nucleus [GO:0005634]; ADP binding [GO:0043531]; receptor activity [GO:0004872]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626],ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response signaling pathway, resistance gene-dependent [GO:0009870] locus:2170333;,locus:2158475;,locus:2153207;,locus:2122985; AT5G17880,AT5G45250,AT5G45060,AT4G19530 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E9JD LECRKS3 Q9STF0 LRKS3_ARATH Receptor like protein kinase S.3 (LecRK-S.3) (EC 2.7.11.1) 2.7.11.1 38207 Receptor like protein kinase S.3 (LecRK-S.3) (EC 2.7.11.1) ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2102797; AT3G46760 kinase family NA NA NA NA NA NA NA ENOG411E9JE RMR4 Q0WPW5 RMR4_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 4 (AtRMR4) FUNCTION: Involved in the trafficking of vacuolar proteins. May function as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) (By similarity). {ECO:0000250}. 49723 Receptor homology region, transmembrane domain- and RING domain-containing protein 4 (AtRMR4) integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; protein storage vacuole membrane [GO:0032586]; metal ion binding [GO:0046872]; protein transport [GO:0015031] locus:2133697; AT4G09560 PA domain NA NA NA NA NA NA NA ENOG411E9JF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase alpha/beta family nucleotide-binding domain NA NA NA NA NA NA NA ENOG411E9JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0461800 protein (cDNA clone:J013069F06, full insert sequence) (cDNA clone:J013087K18, full insert sequence),Os08g0461400 protein (Fragment),Os08g0461800 protein (Fragment) B7ECB0,A0A0N7KPZ2,A0A0P0XGI0 B7ECB0_ORYSJ,A0A0N7KPZ2_ORYSJ,A0A0P0XGI0_ORYSJ Os08g0461800 OSNPB_080461800,Os08g0461400 OSNPB_080461400 ENOG411E9JA Q9FGT2,Q9C515,Q9CAD8,Q9CAD9,A0A1P8AQ92,F4I3Q6 Q9FGT2_ARATH,Q9C515_ARATH,Q9CAD8_ARATH,Q9CAD9_ARATH,A0A1P8AQ92_ARATH,F4I3Q6_ARATH Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS class) (Disease resistance protein, putative) (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 27010-23648),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 23468-19973),Disease resistance protein (TIR-NBS-LRR class) family 119935,48024,110510,121769,75373,113497 Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Disease resistance protein (TIR-NBS class) (Disease resistance protein, putative) (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 27010-23648),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 23468-19973),Disease resistance protein (TIR-NBS-LRR class) family ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2155801;,locus:2013875;,locus:2026649;,locus:2026634; AT5G58120,AT1G66090,AT1G63730,AT1G63740 Disease resistance protein NA NA NA NA NA NA NA ENOG411E9JB SAUR34 O49643 O49643_ARATH Auxin-responsive family protein (Predicted protein) (SAUR-like auxin-responsive protein family) (Uncharacterized protein AT4g22620) 18568 Auxin-responsive family protein (Predicted protein) (SAUR-like auxin-responsive protein family) (Uncharacterized protein AT4g22620) response to auxin [GO:0009733] locus:2127555; AT4G22620 Auxin-responsive family NA NA NA NA NA NA NA ENOG411E9JC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein Os02g0470600 protein A0A0P0VIW3 A0A0P0VIW3_ORYSJ Os02g0470600 OSNPB_020470600 ENOG411E9JM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Os02g0761100 protein (Putative peptidylprolyl isomerase D) (cDNA clone:J023054M07, full insert sequence),Os06g0216800 protein (Putative cyclophilin-40) (cDNA clone:J013134M21, full insert sequence) Q6Z6H8,Q69TG8 Q6Z6H8_ORYSJ,Q69TG8_ORYSJ Os02g0761100 Os02g0761100 OJ1175_B01.26 OSNPB_020761100 P0486G03.2,Os06g0216800 OSJNBb0024N18.19 OSNPB_060216800 ENOG411E9JN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Digalactosyldiacylglycerol synthase NA NA NA NA NA NA NA ENOG411E9JH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411E9JI HDG4 Q8L7H4 HDG4_ARATH Homeobox-leucine zipper protein HDG4 (HD-ZIP protein HDG4) (Homeodomain GLABRA 2-like protein 4) (Homeodomain transcription factor HDG4) (Protein HOMEODOMAIN GLABROUS 4) FUNCTION: Probable transcription factor. {ECO:0000250}. 79277 Homeobox-leucine zipper protein HDG4 (HD-ZIP protein HDG4) (Homeodomain GLABRA 2-like protein 4) (Homeodomain transcription factor HDG4) (Protein HOMEODOMAIN GLABROUS 4) nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:16778018}. locus:2129396; AT4G17710 START NA NA NA NA NA NA NA ENOG411E9JJ CML35 P30188 CML35_ARATH Probable calcium-binding protein CML35 (Calmodulin-like protein 1) (Calmodulin-like protein 35) FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 23443 Probable calcium-binding protein CML35 (Calmodulin-like protein 1) (Calmodulin-like protein 35) plasma membrane [GO:0005886]; calcium ion binding [GO:0005509] locus:2040342; AT2G41410 Pfam:efhand NA NA NA NA NA NA NA ENOG411E9JK F1I16_80 Q9SMT9,Q9LXJ7,Q9SMU1,Q501E9,Q9SMU0,Q9LXJ6,Q9M055,F4J826,A0A1I9LNU8,F4IWQ4 FBD9_ARATH,FBD11_ARATH,FDL19_ARATH,FDL20_ARATH,FDL18_ARATH,FDL21_ARATH,Q9M055_ARATH,F4J826_ARATH,A0A1I9LNU8_ARATH,F4IWQ4_ARATH FBD-associated F-box protein At3g49020,FBD-associated F-box protein At3g52670,Putative F-box/FBD/LRR-repeat protein At3g49040,F-box/FBD/LRR-repeat protein At3g51530,Putative F-box/FBD/LRR-repeat protein At3g49030,F-box/FBD/LRR-repeat protein At3g52680,F-box/FBD/LRR protein (Uncharacterized protein F1I16_80),RNI-like superfamily protein,F-box/FBD/LRR protein,FBD, F-box and Leucine Rich Repeat domains containing protein 51421,48650,48309,52751,50820,52255,25389,34475,13729,47848 FBD-associated F-box protein At3g49020,FBD-associated F-box protein At3g52670,Putative F-box/FBD/LRR-repeat protein At3g49040,F-box/FBD/LRR-repeat protein At3g51530,Putative F-box/FBD/LRR-repeat protein At3g49030,F-box/FBD/LRR-repeat protein At3g52680,F-box/FBD/LRR protein (Uncharacterized protein F1I16_80),RNI-like superfamily protein,F-box/FBD/LRR protein,FBD, F-box and Leucine Rich Repeat domains containing protein nucleus [GO:0005634] locus:2101293;,locus:2101323;,locus:2081880;,locus:2101308;,locus:2083268;,locus:2078986;,locus:2083278; AT3G49020,AT3G52670,AT3G49040,AT3G51530,AT3G49030,AT3G52680,AT3G55670,AT3G52690 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E0UJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ammonium Transporter Putative ammonium transporter 4 member 1 (OsAMT4;1),Os12g0105100 protein Q10CV4,A0A0P0Y6B7 AMT41_ORYSJ,A0A0P0Y6B7_ORYSJ AMT4-1 Os03g0749000 Os03g0749050 LOC_Os03g53780 OSJNBa0069E14.17,Os12g0105100 OSNPB_120105100 ENOG411EE1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411E0UT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411ED4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411ED4T C0SUZ3 C0SUZ3_ARATH BZIP family transcription factor (Uncharacterized protein At1g35490) (Fragment) 34511 BZIP family transcription factor (Uncharacterized protein At1g35490) (Fragment) nucleus [GO:0005634]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893] locus:2008673; BRLZ NA NA NA NA NA NA NA ENOG411ED4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipopolysaccharide kinase (Kdo/WaaP) family NA NA NA NA NA NA NA ENOG411ED4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411ED4Q F9F8.19,T9C5.40 Q9SCL2,Q9M2D0,Q9SRL0,Q9S7F8,A0A1I9LRT9 FB197_ARATH,FB214_ARATH,Q9SRL0_ARATH,Q9S7F8_ARATH,A0A1I9LRT9_ARATH F-box protein At3g49450,F-box protein At3g61340,F-box associated ubiquitination effector family protein (Uncharacterized protein F9F8.19),F-box associated ubiquitination effector family protein (F-box family protein-related) (Uncharacterized protein T1G12.14) (Uncharacterized protein T9C5.40),F-box and associated interaction domains-containing protein 45433,47330,20320,23795,50242 F-box protein At3g49450,F-box protein At3g61340,F-box associated ubiquitination effector family protein (Uncharacterized protein F9F8.19),F-box associated ubiquitination effector family protein (F-box family protein-related) (Uncharacterized protein T1G12.14) (Uncharacterized protein T9C5.40),F-box and associated interaction domains-containing protein locus:2114673;,locus:2098911;,locus:2085497;,locus:2114658; AT3G49450,AT3G61340,AT3G10990,AT3G49440 F-box associated domain NA NA NA NA NA NA NA ENOG411ED4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411ED4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function DUF20 NA NA NA NA NA NA NA ENOG411ED4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like NA NA NA NA NA NA NA ENOG411ED4E Q9LV41,B3H594 FBK68_ARATH,B3H594_ARATH Putative F-box/kelch-repeat protein At3g24610,F-box/kelch-repeat SKIP6-like protein 43190,28100 Putative F-box/kelch-repeat protein At3g24610,F-box/kelch-repeat SKIP6-like protein locus:2091737;,locus:4515102849; AT3G24610,AT2G14288 Kelch motif NA NA NA NA NA NA NA ENOG411ED4C APX3 Q42564 APX3_ARATH L-ascorbate peroxidase 3 (AtAPx03) (EC 1.11.1.11) FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ARA:AT4G35000-MONOMER; 1.11.1.11 31572 L-ascorbate peroxidase 3 (AtAPx03) (EC 1.11.1.11) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; glyoxysomal membrane [GO:0046861]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to cytokinin [GO:0009735]; response to oxidative stress [GO:0006979]; response to reactive oxygen species [GO:0000302] locus:2131586; AT4G35000 Peroxidase NA NA NA NA NA NA NA ENOG411ED4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os09g0385000 protein,Os09g0384900 protein,Os02g0271700 protein A3BYE9,Q6H5N4,A0A0P0VHH7 A3BYE9_ORYSJ,Q6H5N4_ORYSJ,A0A0P0VHH7_ORYSJ Os09g0385000 OsJ_29211 OSNPB_090385000,Os09g0384900 OJ1118_F11.28 OsJ_29209 OSNPB_090384900,Os02g0271700 OSNPB_020271700 ENOG411ED46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0207000 protein (SEU3A protein, putative, expressed),Expressed protein (Os11g0207100 protein) (cDNA clone:J013001P12, full insert sequence),Os11g0207000 protein (Fragment) Q2R940,Q2R939,A0A0P0XZU7 Q2R940_ORYSJ,Q2R939_ORYSJ,A0A0P0XZU7_ORYSJ LOC_Os11g10060 Os11g0207000 OSNPB_110207000,Os11g0207100 LOC_Os11g10070 Os11g0207100 OSNPB_110207100,Os11g0207000 OSNPB_110207000 ENOG411ED45 TET16,TET17 Q5BQ04,Q58G35 TET16_ARATH,TET17_ARATH Tetraspanin-16,Tetraspanin-17 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 28224,28404 Tetraspanin-16,Tetraspanin-17 integral component of membrane [GO:0016021] locus:2014064;,locus:504956230; AT1G18510,AT1G74045 NA NA NA NA NA NA NA NA ENOG411ED44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAF domain NA NA NA NA NA NA NA ENOG411ED43 Q9LJP2 GDL51_ARATH GDSL esterase/lipase At3g14220 (EC 3.1.1.-) (Extracellular lipase At3g14220) 3.1.1.- 40249 GDSL esterase/lipase At3g14220 (EC 3.1.1.-) (Extracellular lipase At3g14220) extracellular region [GO:0005576]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2090780; AT3G14220 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411ED42 CHX16 Q1HDT3 CHX16_ARATH Cation/H(+) antiporter 16 (Protein CATION/H+ EXCHANGER 16) (AtCHX16) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 88051 Cation/H(+) antiporter 16 (Protein CATION/H+ EXCHANGER 16) (AtCHX16) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Expressed in leaves and roots. {ECO:0000269|PubMed:15347787}. locus:2024578; AT1G64170 Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411ED41 Q93Z34,A0A1P8AZZ1 Q93Z34_ARATH,A0A1P8AZZ1_ARATH Alpha/beta-Hydrolases superfamily protein (At2g24280/F27D4.19),Alpha/beta-Hydrolases superfamily protein R-ATH-6798695; 56233,49188 Alpha/beta-Hydrolases superfamily protein (At2g24280/F27D4.19),Alpha/beta-Hydrolases superfamily protein dipeptidyl-peptidase activity [GO:0008239]; serine-type peptidase activity [GO:0008236]; proteolysis [GO:0006508],serine-type peptidase activity [GO:0008236] locus:2047495; AT2G24280 serine carboxypeptidase S28 family protein NA NA NA NA NA NA NA ENOG411ED40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411DZKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH OSJNBb0015D13.17 protein (Os04g0631600 protein) Q0J9U0 Q0J9U0_ORYSJ Os04g0631600 Os04g0631600 OsJ_16289 OSJNBb0015D13.17 OSNPB_040631600 ENOG411DZKZ Q949M8,Q9C991 3HID3_ARATH,3HID2_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial (HIBADH-like) (EC 1.1.1.31),Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial (HIBADH-like) (EC 1.1.1.31) PATHWAY: Amino-acid degradation; L-valine degradation. ARA:AT1G71180-MONOMER;,ARA:AT1G71170-MONOMER; 1.1.1.31 33378,31438 Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial (HIBADH-like) (EC 1.1.1.31),Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial (HIBADH-like) (EC 1.1.1.31) mitochondrion [GO:0005739]; 3-hydroxyisobutyrate dehydrogenase activity [GO:0008442]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; valine catabolic process [GO:0006574] locus:2026351;,locus:2026341; AT1G71180,AT1G71170 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein Os05g0565500 protein (cDNA, clone: J100058A22, full insert sequence) Q0DFX0 Q0DFX0_ORYSJ Os05g0565500 Os05g0565500 OSNPB_050565500 ENOG411DZKX C0LGG7,F4JLP8,A0A1P8B4D6,A0A1P8B4D7,A0A1P8B4E9,F4JLQ0 Y1534_ARATH,F4JLP8_ARATH,A0A1P8B4D6_ARATH,A0A1P8B4D7_ARATH,A0A1P8B4E9_ARATH,F4JLQ0_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53420 (EC 2.7.11.1),Leucine-rich repeat (LRR) family protein 2.7.11.1 107490,19363,14013,16719,16623,17602 Probable LRR receptor-like serine/threonine-protein kinase At1g53420 (EC 2.7.11.1),Leucine-rich repeat (LRR) family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2009630;,locus:1009023334; AT1G53420,AT4G16162 leucine-rich repeat receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411E0JU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWP-RK domain Os02g0136000 protein,Os11g0615400 protein,Os05g0192301 protein A0A0P0VEJ5,A0A0N7KT78,A0A0P0WJ41 A0A0P0VEJ5_ORYSJ,A0A0N7KT78_ORYSJ,A0A0P0WJ41_ORYSJ Os02g0136000 OSNPB_020136000,Os11g0615400 OSNPB_110615400,Os05g0192301 OSNPB_050192301 ENOG411E0JV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAR NA NA NA NA NA NA NA ENOG411E0JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF593 Expressed protein (Os10g0414800 protein) (cDNA clone:J023057O19, full insert sequence) Q7XEN2 Q7XEN2_ORYSJ LOC_Os10g27480 Os10g0414800 OsJ_31514 OSNPB_100414800 ENOG411E0JA Q8GWH6,A0A1P8APF0,A0A1P8APH0,A0A1P8APM1 Q8GWH6_ARATH,A0A1P8APF0_ARATH,A0A1P8APH0_ARATH,A0A1P8APM1_ARATH At1g16040 (Phosphatidylinositol-glycan biosynthesis class F-like protein) (Uncharacterized protein At1g16040/T24D18_15) (mRNA, clone: RAFL21-55-D09) (mRNA, clone: RAFL21-88-A17),Phosphatidylinositol-glycan biosynthesis class F-like protein R-ATH-162710; 25064,14245,21167,23975 At1g16040 (Phosphatidylinositol-glycan biosynthesis class F-like protein) (Uncharacterized protein At1g16040/T24D18_15) (mRNA, clone: RAFL21-55-D09) (mRNA, clone: RAFL21-88-A17),Phosphatidylinositol-glycan biosynthesis class F-like protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; GPI anchor biosynthetic process [GO:0006506] locus:2200467; AT1G16040 Glycosylphosphatidylinositol anchor biosynthesis protein 11 Os03g0129000 protein (Phospho-ethanolamine N-methyltransferase family protein, expressed) (cDNA clone:J033074N24, full insert sequence),Os10g0200800 protein Q10SA7,A0A0P0XT63 Q10SA7_ORYSJ,A0A0P0XT63_ORYSJ LOC_Os03g03690 Os03g0129000 OsJ_09269 OSNPB_030129000,Os10g0200800 OSNPB_100200800 ENOG411E0JC HSFB3 O22230 HSFB3_ARATH Heat stress transcription factor B-3 (AtHsfB3) (AtHsf-05) FUNCTION: Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 28308 Heat stress transcription factor B-3 (AtHsfB3) (AtHsf-05) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to cadmium ion [GO:0046686]; transcription, DNA-templated [GO:0006351] locus:2062698; AT2G41690 transcription factor NA NA NA NA NA NA NA ENOG411E0JE SRT2 Q94AQ6,F4KCI5,F4KCI3 SIR4_ARATH,F4KCI5_ARATH,F4KCI3_ARATH NAD-dependent protein deacylase SRT2 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 2),Sirtuin 2,NAD-dependent protein deacylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog) FUNCTION: NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues (By similarity). Negatively regulates plant basal defense against plant pathogens, possibly by suppressing salicylic acid biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03161, ECO:0000269|PubMed:20573705}.,FUNCTION: NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues. {ECO:0000256|HAMAP-Rule:MF_03161}. R-ATH-2151201; 3.5.1.- 41536,30445,36479 NAD-dependent protein deacylase SRT2 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 2),Sirtuin 2,NAD-dependent protein deacylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog) mitochondrial matrix [GO:0005759]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; NAD+ binding [GO:0070403]; defense response to bacterium [GO:0042742]; negative regulation of defense response [GO:0031348],NAD+ binding [GO:0070403],mitochondrial matrix [GO:0005759]; NAD+ binding [GO:0070403]; NAD-dependent protein deacetylase activity [GO:0034979]; zinc ion binding [GO:0008270]; protein ADP-ribosylation [GO:0006471] locus:2184717; AT5G09230 NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form (By similarity) NAD-dependent protein deacylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog) Q2QWW9 Q2QWW9_ORYSJ LOC_Os12g07950 Os12g0179800 OSNPB_120179800 FUNCTION: NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues. {ECO:0000256|HAMAP-Rule:MF_03161}. ENOG411E0JD O80569 O80569_ARATH GPI-anchored adhesin-like protein (Uncharacterized protein At2g43990) 68903 GPI-anchored adhesin-like protein (Uncharacterized protein At2g43990) locus:2051759; AT2G43990 NA Expressed protein (Os11g0247500 protein) (cDNA clone:002-172-C02, full insert sequence) Q53M54 Q53M54_ORYSJ Os11g0247500 LOC_Os11g14240 Os11g0247500 OSNPB_110247500 ENOG411EFSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EFSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EFSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cobalamin adenosyltransferase NA NA NA NA NA NA NA ENOG411EFSR Q5HZ54,Q9C7E6,F4IFU5 Q5HZ54_ARATH,Q9C7E6_ARATH,F4IFU5_ARATH ATP-dependent RNA helicase (At2g33510),ATP-dependent RNA helicase (At1g28070) (Uncharacterized protein At1g28070) (Uncharacterized protein F13K9.17),ATP-dependent RNA helicase 21568,19948,23305 ATP-dependent RNA helicase (At2g33510),ATP-dependent RNA helicase (At1g28070) (Uncharacterized protein At1g28070) (Uncharacterized protein F13K9.17),ATP-dependent RNA helicase helicase activity [GO:0004386],helicase activity [GO:0004386]; cuticle development [GO:0042335] locus:2010534;,locus:2051114; AT2G33510,AT1G28070 Has 40 Blast hits to 35 proteins in 7 species Archae - 0 NA NA NA NA NA NA NA ENOG411EFSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nucleolar protein Os08g0109600 protein,Os06g0355900 protein A0A0N7KP57,A0A0P0WWR0 A0A0N7KP57_ORYSJ,A0A0P0WWR0_ORYSJ Os08g0109600 OSNPB_080109600,Os06g0355900 OSNPB_060355900 ENOG411EFSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) Os08g0164000 protein (cDNA clone:002-116-G10, full insert sequence),Os08g0164300 protein,Os10g0358900 protein,Os08g0163900 protein,Os08g0164400 protein,Os08g0166100 protein,Os07g0171400 protein Q7EY05,Q7EY04,Q8W2V8,A0A0P0XCA2,A0A0P0XCA8,A0A0P0XCZ9,A0A0P0X2P3 Q7EY05_ORYSJ,Q7EY04_ORYSJ,Q8W2V8_ORYSJ,A0A0P0XCA2_ORYSJ,A0A0P0XCA8_ORYSJ,A0A0P0XCZ9_ORYSJ,A0A0P0X2P3_ORYSJ OJ9990_A01.124 Os08g0164000 OJ1449_C01.7 OSNPB_080164000,OJ9990_A01.128 Os08g0164300 OJ1449_C01.11 OSNPB_080164300,Os10g0358900 LOC_Os10g21490 OsJ_31202 OSJNBb0076H04.14 OSNPB_100358900,Os08g0163900 OSNPB_080163900,Os08g0164400 OSNPB_080164400,Os08g0166100 OSNPB_080166100,Os07g0171400 OSNPB_070171400 ENOG411EFSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase C65 Otubain NA NA NA NA NA NA NA ENOG411EFSH Q9MA57 Q9MA57_ARATH C2 domain-containing protein (F22F7.11 protein) 14274 C2 domain-containing protein (F22F7.11 protein) locus:2079762; AT3G05440 C2 domain NA NA NA NA NA NA NA ENOG411EFSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFSJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFSK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EFSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein regulator of cytokinesis NA NA NA NA NA NA NA ENOG411EFSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFSB COR15B,COR15A Q9SIN5,Q42512,F4IP47 CR15B_ARATH,CR15A_ARATH,F4IP47_ARATH Protein COLD-REGULATED 15B, chloroplastic (AtCOR15B),Protein COLD-REGULATED 15A, chloroplastic (AtCOR15A),Cold-regulated 15a FUNCTION: Exhibits cryoprotective activity toward stromal substrates in chloroplasts and in protoplasts and confers freezing tolerance to plants in a CBF-dependent manner. Protectant against various stresses (e.g. cold, drought and heat stress) by preventing protein aggregation and attenuating enzyme inactivation. Influences the intrinsic curvature of the inner membrane of the chloroplast envelope, and modulates the freeze-induced lamellar-to-hexagonal II phase transitions that occur in regions where the plasma membrane is brought into close apposition with the chloroplast envelope during freeze-induced osmotic contraction (By similarity). Mediates a shift in the melting curves of phospholipids-containing membranes to lower temperatures (PubMed:20510170). Involved in the regulation of leaf senescence by abscisic acid (ABA) in a VNI2-dependent manner (PubMed:21673078). {ECO:0000250|UniProtKB:Q42512, ECO:0000269|PubMed:20510170, ECO:0000269|PubMed:21673078}.,FUNCTION: Exhibits cryoprotective activity toward stromal substrates (e.g. LDH and rubisco) in chloroplasts and in protoplasts and confers freezing tolerance to plants in a CBF-dependent manner (PubMed:1567390, PubMed:11038526, PubMed:9826741, PubMed:17384167, PubMed:18540080, PubMed:19563440). Protectant against various stresses (e.g. cold, drought and heat stress) by preventing protein aggregation (e.g. LDH) and attenuating enzyme inactivation (PubMed:18540080). Influences the intrinsic curvature of the inner membrane of the chloroplast envelope, and modulates the freeze-induced lamellar-to-hexagonal II phase transitions that occur in regions where the plasma membrane is brought into close apposition with the chloroplast envelope during freeze-induced osmotic contraction (PubMed:9826741). Mediates a shift in the melting curves of phospholipids-containing membranes to lower temperatures (PubMed:20510170). Involved in the regulation of leaf senescence by abscisic acid (ABA) in a VNI2-dependent manner (PubMed:21673078). {ECO:0000269|PubMed:11038526, ECO:0000269|PubMed:1567390, ECO:0000269|PubMed:17384167, ECO:0000269|PubMed:18540080, ECO:0000269|PubMed:19563440, ECO:0000269|PubMed:20510170, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:9826741}. MISCELLANEOUS: Predominantly unstructured in solution and mainly alpha-helical after drying. {ECO:0000269|PubMed:20510170}.,MISCELLANEOUS: Remaining soluble upon boiling in aqueous solution. Oligomers can stay soluble with small structural change after boiling and freeze-thaw treatments (PubMed:16668917, PubMed:17384167). Predominantly unstructured in solution and mainly alpha-helical after drying (PubMed:20510170). {ECO:0000269|PubMed:16668917, ECO:0000269|PubMed:17384167, ECO:0000269|PubMed:20510170}. 14961,14605,11043 Protein COLD-REGULATED 15B, chloroplastic (AtCOR15B),Protein COLD-REGULATED 15A, chloroplastic (AtCOR15A),Cold-regulated 15a chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; galactose binding [GO:0005534]; lipid binding [GO:0008289]; cold acclimation [GO:0009631]; defense response to fungus [GO:0050832]; leaf senescence [GO:0010150]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; galactose binding [GO:0005534]; lipid binding [GO:0008289]; circadian rhythm [GO:0007623]; cold acclimation [GO:0009631]; drought recovery [GO:0009819]; heat acclimation [GO:0010286]; leaf senescence [GO:0010150]; plastid inner membrane organization [GO:0009667]; protein homooligomerization [GO:0051260]; protein oligomerization [GO:0051259]; protein stabilization [GO:0050821]; red or far-red light signaling pathway [GO:0010017]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to freezing [GO:0050826]; response to high light intensity [GO:0009644]; response to light stimulus [GO:0009416]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:2041534;,locus:2041504; AT2G42530,AT2G42540 NA NA NA NA NA NA NA NA ENOG411EFSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFSE Q0WR80,Q9LSN2 Q0WR80_ARATH,Q9LSN2_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein At3g17145),Invertase inhibitor-like protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) 20749,19483 Plant invertase/pectin methylesterase inhibitor superfamily protein (Uncharacterized protein At3g17145),Invertase inhibitor-like protein (Plant invertase/pectin methylesterase inhibitor superfamily protein) enzyme inhibitor activity [GO:0004857] locus:2086072;,locus:4010713751; AT3G17150,AT3G17152 Enzyme inhibitor pectinesterase NA NA NA NA NA NA NA ENOG411EFSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0461000 protein (cDNA clone:002-118-B02, full insert sequence),Os08g0461700 protein (Fragment) Q6Z227,A0A0P0XGV2 Q6Z227_ORYSJ,A0A0P0XGV2_ORYSJ Os08g0461000 Os08g0461000 B1111C03.1 OSNPB_080461000 P0690E03.29,Os08g0461700 OSNPB_080461700 ENOG411EFSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0513250 protein,Os07g0445300 protein,Os04g0248500 protein,Os04g0343600 protein B9F076,A0A0P0X5D4,A0A0P0W7M8,A0A0P0W8X8 B9F076_ORYSJ,A0A0P0X5D4_ORYSJ,A0A0P0W7M8_ORYSJ,A0A0P0W8X8_ORYSJ Os02g0513250 OsJ_06891 OSNPB_020513250,Os07g0445300 OSNPB_070445300,Os04g0248500 OSNPB_040248500,Os04g0343600 OSNPB_040343600 ENOG411EFS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EFS9 PP2A2,PP2-A2 O81866,A0A1P8B3N9,F4JTZ6 P2A02_ARATH,A0A1P8B3N9_ARATH,F4JTZ6_ARATH Protein PHLOEM PROTEIN 2-LIKE A2 (AtPP2-A2),Lectin-like protein 22480,25285,25577 Protein PHLOEM PROTEIN 2-LIKE A2 (AtPP2-A2),Lectin-like protein integral component of membrane [GO:0016021],carbohydrate binding [GO:0030246] TISSUE SPECIFICITY: Vascular tissues, specifically in phloem companion cell-sieve element complexes. {ECO:0000269|PubMed:12529520}. locus:2133960; AT4G19850 NA NA NA NA NA NA NA NA ENOG411EFS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0216300 protein (cDNA clone:J023088C01, full insert sequence),Os02g0216300 protein (Fragment) B7EQF1,A0A0P0VGK7,A0A0N7KEX7,A0A0P0VGJ7,A0A0P0VGG1 B7EQF1_ORYSJ,A0A0P0VGK7_ORYSJ,A0A0N7KEX7_ORYSJ,A0A0P0VGJ7_ORYSJ,A0A0P0VGG1_ORYSJ Os02g0216300 OSNPB_020216300 ENOG411EFS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease T2 family NA NA NA NA NA NA NA ENOG411EFS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0593100 protein Q6ATT5 Q6ATT5_ORYSJ OSJNBb0056O10.6 Os03g0593100 OsJ_11613 OSNPB_030593100 ENOG411EFS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 Os07g0144800 protein (Putative Skp1),Os09g0274400 protein (Putative SKP1),Os09g0275200 protein (Putative SKP1) (cDNA clone:J023074H10, full insert sequence),Os06g0113800 protein (Putative SKP1),Os07g0625400 protein (Fragment) Q8H5C9,Q6H5Q3,Q6H4D0,Q9LWT8,A0A0P0X908 Q8H5C9_ORYSJ,Q6H5Q3_ORYSJ,Q6H4D0_ORYSJ,Q9LWT8_ORYSJ,A0A0P0X908_ORYSJ OJ1343_B12.128 Os07g0144800 OSJNBa0077B15.106 OSNPB_070144800,Os09g0274400 OJ1031_C12.33 OsJ_28632 OSNPB_090274400,Os09g0275200 Os09g0275200 OsJ_28637 OSJNBb0012I09.11 OSNPB_090275200,Os06g0113800 Os06g0113800 OsJ_19880 OSNPB_060113800 P0541H01.17,Os07g0625400 OSNPB_070625400 ENOG411EFS5 VQ22 Q9LIE6 VQ22_ARATH VQ motif-containing protein 22 (AtVQ22) FUNCTION: May function as positive regulator of plant growth. {ECO:0000305|PubMed:22535423}. MISCELLANEOUS: Plants over-expressing VQ22 show stunted growth phenotype. {ECO:0000269|PubMed:22535423}. 20390 VQ motif-containing protein 22 (AtVQ22) nucleus [GO:0005634] locus:2090389; AT3G22160 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411EFS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription initiation factor TFIID component TAF4 family NA NA NA NA NA NA NA ENOG411EFS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0823150 protein (Fragment),Os05g0477666 protein (Fragment),Os05g0277100 protein (Fragment),Os05g0276750 protein (Fragment),Os02g0268675 protein (Fragment),Os10g0439166 protein (Fragment),Os02g0267350 protein (Fragment),Os01g0249050 protein (Fragment),Os03g0155566 protein (Fragment),Os03g0822033 protein (Fragment),Os06g0621950 protein (Fragment),Os03g0377201 protein (Fragment) A0A0P0V9T4,A0A0N7KKY9,A0A0P0WKB5,A0A0P0WKC6,A0A0P0VHH5,A0A0P0XV11,A0A0P0VHD7,A0A0P0V0M3,A0A0N7KGL6,A0A0P0W5A7,A0A0P0WYS9,A0A0P0VXZ0 A0A0P0V9T4_ORYSJ,A0A0N7KKY9_ORYSJ,A0A0P0WKB5_ORYSJ,A0A0P0WKC6_ORYSJ,A0A0P0VHH5_ORYSJ,A0A0P0XV11_ORYSJ,A0A0P0VHD7_ORYSJ,A0A0P0V0M3_ORYSJ,A0A0N7KGL6_ORYSJ,A0A0P0W5A7_ORYSJ,A0A0P0WYS9_ORYSJ,A0A0P0VXZ0_ORYSJ Os01g0823150 OSNPB_010823150,Os05g0477666 OSNPB_050477666,Os05g0277100 OSNPB_050277100,Os05g0276750 OSNPB_050276750,Os02g0268675 OSNPB_020268675,Os10g0439166 OSNPB_100439166,Os02g0267350 OSNPB_020267350,Os01g0249050 OSNPB_010249050,Os03g0155566 OSNPB_030155566,Os03g0822033 OSNPB_030822033,Os06g0621950 OSNPB_060621950,Os03g0377201 OSNPB_030377201 ENOG411EGII Q4VNZ5,Q2V459,Q4VNZ6 DF296_ARATH,DF298_ARATH,DF295_ARATH Defensin-like protein 296,Putative defensin-like protein 298,Defensin-like protein 295 12067,10861,12551 Defensin-like protein 296,Putative defensin-like protein 298,Defensin-like protein 295 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023175;,locus:1009023232;,locus:1009023220; AT2G04046,AT2G25185,AT2G04045 NA NA NA NA NA NA NA NA ENOG411EGIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0937900 protein Q8S1U3 Q8S1U3_ORYSJ Os01g0937900 OSNPB_010937900 P0504E02.22 ENOG411DV60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0541900 protein A0A0P0WD06 A0A0P0WD06_ORYSJ Os04g0541900 OSNPB_040541900 ENOG411EGPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0680100 protein Q5QMA3 Q5QMA3_ORYSJ Os01g0680100 B1144G04.49 OSNPB_010680100 P0019E03.4 ENOG411EGPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGPE T22K18.24 Q9SR60 Q9SR60_ARATH At3g09950 (Uncharacterized protein T22K18.24) 10786 At3g09950 (Uncharacterized protein T22K18.24) locus:2100128; AT3G09950 NA NA NA NA NA NA NA NA ENOG411EGPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411E010 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Transcription factor TGAL9 (bZIP transcription factor 17) (OsbZIP17) Q0E342 TGAL9_ORYSJ TGAL9 Os02g0194900 LOC_Os02g10140 OJ1225_F07.6 OsJ_05742 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411EK54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411DUXE MED14 Q9SR02 MED14_ARATH Mediator of RNA polymerase II transcription subunit 14 (Protein STRUWWELPETER) (AtSWP) DISRUPTION PHENOTYPE: Dwarf plants with disorganized shoot apical meristem, stem fasciation, abnormal floral structure, delayed flowering and sterile flowers. Reduced cell numbers in aerial organs. {ECO:0000269|PubMed:12426376}. Lanceolate, slightly darker green cotyledons; Dwarf; Fasciated stems and inflorescences; Few, small leaves; Slightly reduced root growth; Abnormal floral morphology; Sterile; SAM becomes increasingly disrupted over time-J. Traas-2002 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in defining the duration of cell proliferation. {ECO:0000269|PubMed:12426376, ECO:0000269|PubMed:17526732}. 185509 Mediator of RNA polymerase II transcription subunit 14 (Protein STRUWWELPETER) (AtSWP) core mediator complex [GO:0070847]; mediator complex [GO:0016592]; plasmodesma [GO:0009506]; RNA polymerase II transcription cofactor activity [GO:0001104]; cold acclimation [GO:0009631]; multicellular organism development [GO:0007275]; positive regulation of cell proliferation [GO:0008284]; regulation of growth [GO:0040008]; systemic acquired resistance [GO:0009627]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During embryogenesis, detected in all cells from the early octant to the torpedo stage. {ECO:0000269|PubMed:12426376}. TISSUE SPECIFICITY: Expressed in roots, stems, developing embryos, young leaf primordia, shoot apical meristems, inflorescence meristems, tapetum in anthers, ovules and floral organ primordia, but not in mature organs. {ECO:0000269|PubMed:12426376}. locus:2084948; AT3G04740 Mediator complex subunit MED14 Os08g0333000 protein (Fragment),Os09g0281900 protein (Thyroid hormone receptor-associated protein complex component TRAP170-like protein),Os09g0281900 protein Q0J6D0,Q6ENK5,A0A0P0XFD7,A0A0P0XKR8 Q0J6D0_ORYSJ,Q6ENK5_ORYSJ,A0A0P0XFD7_ORYSJ,A0A0P0XKR8_ORYSJ Os08g0333000 Os08g0333000 OSNPB_080333000,Os09g0281900 Os09g0281900 OsJ_28670 OSNPB_090281900 P0645D04.24,Os08g0333000 OSNPB_080333000,Os09g0281900 OSNPB_090281900 ENOG411EK50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411DPR0 CSTF64 Q9M9G6 CTF64_ARATH Cleavage stimulating factor 64 (AtCstF-64) (AtCstF64) (CF-1 64 kDa subunit) (Cleavage stimulation factor 64 kDa subunit) (CSTF 64 kDa subunit) (Protein ENHANCED SILENCING PHENOTYPE 1) (Protein SUPPRESSORS OF OVEREXPRESSED FCA 19) (SOF19) DISRUPTION PHENOTYPE: Impaired antisense-RNA-mediated gene silencing (e.g. suppression of overexpression of FCA-mediated FLC repression). Reduced fertility, early flowering, reduced organ size and pale leaves. {ECO:0000269|PubMed:17008405, ECO:0000269|PubMed:19965720}. Decreased organ size and fertility. FUNCTION: One of the multiple factors required for polyadenylation and 3'-end cleavage of pre-mRNAs (By similarity). This subunit is directly involved in the binding to pre-mRNAs, especially on the 3' non-coding region (PubMed:12379796). Required for the targeted 3' processing of antisense transcripts that triggers transcriptional silencing of the corresponding sense gene (PubMed:17008405, PubMed:19965720). {ECO:0000250|UniProtKB:Q8C7E9, ECO:0000269|PubMed:12379796, ECO:0000269|PubMed:17008405, ECO:0000269|PubMed:19965720}. R-ATH-72163;R-ATH-77595; 50137 Cleavage stimulating factor 64 (AtCstF-64) (AtCstF64) (CF-1 64 kDa subunit) (Cleavage stimulation factor 64 kDa subunit) (CSTF 64 kDa subunit) (Protein ENHANCED SILENCING PHENOTYPE 1) (Protein SUPPRESSORS OF OVEREXPRESSED FCA 19) (SOF19) mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; mRNA binding [GO:0003729]; antisense RNA metabolic process [GO:0042868]; developmental growth [GO:0048589]; gene silencing by RNA [GO:0031047]; negative regulation of transcription, DNA-templated [GO:0045892]; pre-mRNA cleavage required for polyadenylation [GO:0098789]; regulation of gene silencing [GO:0060968]; RNA 3'-end processing [GO:0031123] locus:2013016; AT1G71800 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os11g0176100 protein (RNA recognition motif family protein, expressed) (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain), putative) (cDNA clone:J013124G12, full insert sequence) Q53PI0 Q53PI0_ORYSJ LOC_Os11g07490 Os11g0176100 OsJ_33161 OSNPB_110176100 ENOG411DPRU SCAMP4 Q9C6X2 SCAM4_ARATH Secretory carrier-associated membrane protein 4 (Secretory carrier membrane protein 4) FUNCTION: Probably involved in membrane trafficking. {ECO:0000250}. R-ATH-6798695; 30060 Secretory carrier-associated membrane protein 4 (Secretory carrier membrane protein 4) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; transport vesicle membrane [GO:0030658]; protein transport [GO:0015031] locus:2195371; AT1G32050 secretory carrier-associated membrane protein Secretory carrier-associated membrane protein 5 (Secretory carrier membrane protein 5),Secretory carrier-associated membrane protein 6 (Secretory carrier membrane protein 6) Q6Z8F5,Q0JAI9 SCAM5_ORYSJ,SCAM6_ORYSJ SCAMP5 Os02g0697800 LOC_Os02g47010 OsJ_007763 P0459B01.9,SCAMP6 Os04g0597000 Os04g0595800 LOC_Os04g50890 OsJ_16007 OSJNBa0006A01.24 OSJNba0093F12.6 FUNCTION: Probably involved in membrane trafficking. {ECO:0000250}. ENOG411DPRY BHLH51 Q9XEF0 BH051_ARATH Transcription factor bHLH51 (Basic helix-loop-helix protein 51) (AtbHLH51) (bHLH 51) (Transcription factor EN 57) (bHLH transcription factor bHLH051) 28415 Transcription factor bHLH51 (Basic helix-loop-helix protein 51) (AtbHLH51) (bHLH 51) (Transcription factor EN 57) (bHLH transcription factor bHLH051) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2065086; AT2G40200 Transcription factor NA NA NA NA NA NA NA ENOG411EH0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0468200 protein (Os08g0468801 protein) A0A0P0XGL4 A0A0P0XGL4_ORYSJ Os08g0468801 Os08g0468200 OSNPB_080468200 OSNPB_080468801 ENOG411E4DV AGL102 Q9FZF2 Q9FZF2_ARATH AGAMOUS-like 102 (MADS-box protein AGL102) (T2E6.17) 21283 AGAMOUS-like 102 (MADS-box protein AGL102) (T2E6.17) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2202420; AT1G47760 agamous-like MADS-box protein Os02g0164450 protein Q6H6V9 Q6H6V9_ORYSJ Os02g0164450 OJ1661_C12.19 OSJNBa0023I17.2 OSNPB_020164450 ENOG411E4DU TIM14-1,TIM14-2 Q8RV04,Q9SF33 TI141_ARATH,TI142_ARATH Mitochondrial import inner membrane translocase subunit TIM14-1 (Chaperone DnaJ-domain containing protein 1),Mitochondrial import inner membrane translocase subunit TIM14-2 (Chaperone DnaJ-domain containing protein 2) FUNCTION: Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. {ECO:0000250}. 11997,12109 Mitochondrial import inner membrane translocase subunit TIM14-1 (Chaperone DnaJ-domain containing protein 1),Mitochondrial import inner membrane translocase subunit TIM14-2 (Chaperone DnaJ-domain containing protein 2) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743] locus:2828254;,locus:2075004; AT2G35795,AT3G09700 Mitochondrial import inner membrane translocase subunit Os07g0192300 protein (Fragment),Os01g0157800 protein (Putative DNAJ domain-containing methylation-controlled J protein) (cDNA clone:J033072F06, full insert sequence) Q0D810,Q5ZCC4 Q0D810_ORYSJ,Q5ZCC4_ORYSJ Os07g0192300 Os07g0192300 OSNPB_070192300,Os01g0157800 Os01g0157800 OSNPB_010157800 P0011G08.42 ENOG411E4DS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os05g0441400 protein Q6F2M2 Q6F2M2_ORYSJ Os05g0441400 Os05g0441400 B1110B01.7 OsJ_18701 OSJNBa0020H14.2 OSNPB_050441400 ENOG411E4DR Q9FJW1 Q9FJW1_ARATH At5g67620 (DUF4228 domain protein) (Uncharacterized protein At5g67620) 19706 At5g67620 (DUF4228 domain protein) (Uncharacterized protein At5g67620) microtubule [GO:0005874] locus:2158651; AT5G67620 Inherit from euNOG: expressed protein Expressed protein (Os03g0200200 protein) Q10QE1 Q10QE1_ORYSJ Os03g0200200 LOC_Os03g10320 Os03g0200200 OSNPB_030200200 ENOG411E4DQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411E4DP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Expressed protein (Os11g0241200 protein) (cDNA clone:002-181-D06, full insert sequence) Q53M14 Q53M14_ORYSJ Os11g0241200 LOC_Os11g13720 Os11g0241200 OsJ_33490 OSNPB_110241200 ENOG411E4DY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein C2H2 type zinc finger containing protein (Os03g0437100 protein) (Os11g0340477 protein) (Putative zinc finger protein) (Zinc finger, C2H2 type family protein, expressed) (cDNA clone:002-153-G07, full insert sequence) Q75KE6 Q75KE6_ORYSJ Os11g0340477 OSJNBb0034P05.7 LOC_Os03g32220 Os03g0437100 OsJ_11394 OSJNBa0054H04.3 OSNPB_030437100 OSNPB_110340477 ENOG411E4DF Q9LJ90 Q9LJ90_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (Alanine acetyl transferase-like protein) (At3g22560) 19962 Acyl-CoA N-acyltransferases (NAT) superfamily protein (Alanine acetyl transferase-like protein) (At3g22560) membrane [GO:0016020]; N-acetyltransferase activity [GO:0008080] locus:2077046; AT3G22560 Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411E4DC ABF1 Q9M7Q5,F4I3C9 AI5L4_ARATH,F4I3C9_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 (Abscisic acid responsive elements-binding factor 1) (ABRE-binding factor 1) (bZIP transcription factor 35) (AtbZIP35),Abscisic acid responsive element-binding factor 1 Sensitive to freezing when not acclimated-T. Palva-2002 FUNCTION: Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression. 42728,43895 ABSCISIC ACID-INSENSITIVE 5-like protein 4 (Abscisic acid responsive elements-binding factor 1) (ABRE-binding factor 1) (bZIP transcription factor 35) (AtbZIP35),Abscisic acid responsive element-binding factor 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; response to abscisic acid [GO:0009737] locus:2012206; AT1G49720 abscisic acid responsive element-binding factor 1 NA NA NA NA NA NA NA ENOG411E4DB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copper type II ascorbate-dependent monooxygenase C-terminal domain NA NA NA NA NA NA NA ENOG411E4DN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML20 (Calmodulin-like protein 20) Q6Z2J1 CML20_ORYSJ CML20 Os02g0733500 LOC_Os02g50060 OsJ_008004 P0643A10.34 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E4DM HTA12 Q9FJE8,Q9LZ46,F4KCF4 H2A7_ARATH,H2A4_ARATH,F4KCF4_ARATH Probable histone H2A.7 (HTA6),Probable histone H2A.4 (HTA12),Histone H2A FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. 15966,16218,18891 Probable histone H2A.7 (HTA6),Probable histone H2A.4 (HTA12),Histone H2A heterochromatin [GO:0000792]; nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; pericentric heterochromatin [GO:0005721]; plasmodesma [GO:0009506]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342],nuclear chromatin [GO:0000790]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342],chromosome, centromeric region [GO:0000775]; heterochromatin [GO:0000792]; nucleosome [GO:0000786]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982] TISSUE SPECIFICITY: Strong expression through-out the roots and leaves. Also found in meristems and dividing cells. {ECO:0000269|PubMed:16751347}. locus:2168148;,locus:2181808; AT5G59870,AT5G02560 histone h2a Histone H2A,Os04g0212700 protein (Fragment),Os06g0250300 protein,Os08g0289266 protein A0A0P0V312,A0A0P0W7C1,A0A0P0WUM7,A0A0P0XDY7 A0A0P0V312_ORYSJ,A0A0P0W7C1_ORYSJ,A0A0P0WUM7_ORYSJ,A0A0P0XDY7_ORYSJ Os01g0502700 OSNPB_010502700,Os04g0212700 OSNPB_040212700,Os06g0250300 OSNPB_060250300,Os08g0289266 OSNPB_080289266 ENOG411E4D5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Harpin-induced protein 1 containing protein (Os12g0158900 protein),Harpin-induced protein 1 containing protein, expressed (Os12g0159000 protein) (cDNA clone:002-135-B12, full insert sequence) Q2QXF6,Q2QXF5 Q2QXF6_ORYSJ,Q2QXF5_ORYSJ Os12g0158900 LOC_Os12g06210 Os12g0158900 OSNPB_120158900,Os12g0159000 LOC_Os12g06220 Os12g0159000 OSNPB_120159000 ENOG411E4D4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD homeobox protein At4g24660-like NA NA NA NA NA NA NA ENOG411E4D3 LSD1 P94077,A0A1P8B450,F4JUW0 LSD1_ARATH,A0A1P8B450_ARATH,F4JUW0_ARATH Protein LSD1 (Protein CHILLING SENSITIVE 4) (Protein LESION SIMULATING DISEASE 1) (AtLSD1) (Putative zinc finger LSD1),LSD1 zinc finger family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, however cold treatment induces the development of yellowish leaves with necrosis, and treatment with salicylic acid or infection with avirulent pathogen causes a runaway cell death and plant death. {ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:20456049}. Sensitive to avirulent Pseudomonas syringae, BTH (SA mimic), and oxidative stress-J. Dangl-1997 FUNCTION: Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. MISCELLANEOUS: When expressed in Arabidopsis, Pisum sativa LSD1 interacts with importin alpha via the LSD1-type zinc finger motifs, suggesting that the nuclear import of LSD1 may rely on the interaction between its zinc finger motifs and importin alpha. {ECO:0000269|PubMed:21811563}. 20107,13983,22364 Protein LSD1 (Protein CHILLING SENSITIVE 4) (Protein LESION SIMULATING DISEASE 1) (AtLSD1) (Putative zinc finger LSD1),LSD1 zinc finger family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; negative regulation of programmed cell death [GO:0043069]; plant-type hypersensitive response [GO:0009626],transcription factor activity, sequence-specific DNA binding [GO:0003700]; aerenchyma formation [GO:0010618]; cell death [GO:0008219]; plant-type hypersensitive response [GO:0009626]; regulation of 1-aminocyclopropane-1-carboxylate metabolic process [GO:0010602]; regulation of ethylene-activated signaling pathway [GO:0010104]; regulation of hydrogen peroxide metabolic process [GO:0010310]; response to hypoxia [GO:0001666]; response to molecule of oomycetes origin [GO:0002240]; response to superoxide [GO:0000303]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862] TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. locus:2128639; AT4G20380 LSD1 zinc finger domain containing protein expressed Protein LOL2 (Protein LSD ONE LIKE 2) (OsLOL2) (Putative zinc finger LOL2),Protein LOL3 (Protein LSD ONE LIKE 3) (OsLOL3) (Putative zinc finger LOL3) Q2QMB3,Q6ASS2 LOL2_ORYSJ,LOL3_ORYSJ LOL2 Os12g0611000 LOC_Os12g41700 OsJ_36836,LOL3 Os03g0639600 LOC_Os03g43840 B1394A07.19 OsJ_11851 OSJNBb0029I19.1 FUNCTION: Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. ENOG411E4D1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 OSJNBb0103I08.8 protein (Os04g0542000 protein) (cDNA clone:002-118-E05, full insert sequence) Q7XUJ4 Q7XUJ4_ORYSJ Os04g0542000 OSJNBb0103I08.8 OSNPB_040542000 ENOG411E4D0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor OSJNBa0038O10.11 protein (Os04g0526000 protein) Q7XKJ6 Q7XKJ6_ORYSJ Os04g0526000 Os04g0526000 OSJNBa0038O10.11 OSNPB_040526000 ENOG411DUXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os01g0653100 protein (Fragment) A0A0P0V610 A0A0P0V610_ORYSJ Os01g0653100 OSNPB_010653100 ENOG411EG7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PsbP NA NA NA NA NA NA NA ENOG411E0WD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os06g0121200 protein,Os06g0120200 protein (cDNA clone:J013050O22, full insert sequence),Os06g0119300 protein,Os06g0117500 protein Q5VQ90,Q5VQ96,Q5VPR0,A0A0P0WRS0 Q5VQ90_ORYSJ,Q5VQ96_ORYSJ,Q5VPR0_ORYSJ,A0A0P0WRS0_ORYSJ Os06g0121200 OsJ_19935 OSNPB_060121200 P0660D08.31,Os06g0120200 Os06g0120200 OsJ_19931 OSNPB_060120200 P0660D08.21,Os06g0119300 OsJ_19919 OSJNBa0062J13.37 OSNPB_060119300 P0660D08.6,Os06g0117500 OSNPB_060117500 ENOG411E0WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor MADS-box transcription factor 5 (FDRMADS2) (OsMADS5) Q0DEB8 MADS5_ORYSJ MADS5 Os06g0162800 LOC_Os06g06750 OsJ_019405 P0681F10.39 FUNCTION: Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}. ENOG411E0WB C0Z2W6,A0A1P8ASC9,Q8GWB5,F4HZ95,F4HZ93 C0Z2W6_ARATH,A0A1P8ASC9_ARATH,Q8GWB5_ARATH,F4HZ95_ARATH,F4HZ93_ARATH AT1G02960 protein (Kinetochore protein),Kinetochore protein,Kinetochore protein (Uncharacterized protein At1g02960) (Uncharacterized protein At1g02960/F22D16_4) 46440,42755,52020,45489,51069 AT1G02960 protein (Kinetochore protein),Kinetochore protein,Kinetochore protein (Uncharacterized protein At1g02960) (Uncharacterized protein At1g02960/F22D16_4) locus:2024760; AT1G02960 NA NA NA NA NA NA NA NA ENOG411E0WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os11g0442500 protein A0A0P0Y1V2 A0A0P0Y1V2_ORYSJ Os11g0442500 OSNPB_110442500 ENOG411E0WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os06g0288900 protein,Os01g0334000 protein,Os01g0540400 protein,Os02g0470200 protein,Os03g0845100 protein Q5VMH0,A0A0P0V1Y9,A0A0N7KD41,A0A0P0VIV7,A0A0P0W5N4 Q5VMH0_ORYSJ,A0A0P0V1Y9_ORYSJ,A0A0N7KD41_ORYSJ,A0A0P0VIV7_ORYSJ,A0A0P0W5N4_ORYSJ B1197G05.26 Os06g0288900 OSNPB_060288900,Os01g0334000 OSNPB_010334000,Os01g0540400 OSNPB_010540400,Os02g0470200 OSNPB_020470200,Os03g0845100 OSNPB_030845100 ENOG411E0WN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphate-induced protein 1 conserved region domain containing protein expressed Os02g0756800 protein (Putative phosphate-induced protein 1) (cDNA clone:001-118-C09, full insert sequence) Q0DXF4 Q0DXF4_ORYSJ Os02g0756800 Os02g0756800 OSNPB_020756800 ENOG411E0WJ PPA6 Q9LXC9 IPYR6_ARATH Soluble inorganic pyrophosphatase 6, chloroplastic (EC 3.6.1.1) (Inorganic pyrophosphatase 6) (Pyrophosphate phospho-hydrolase 6) (PPase 6) R-ATH-379716;R-ATH-379726;R-ATH-71737; 3.6.1.1; 3.6.1.1 33380 Soluble inorganic pyrophosphatase 6, chloroplastic (EC 3.6.1.1) (Inorganic pyrophosphatase 6) (Pyrophosphate phospho-hydrolase 6) (PPase 6) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; thylakoid [GO:0009579]; inorganic diphosphatase activity [GO:0004427]; magnesium ion binding [GO:0000287]; defense response to bacterium [GO:0042742]; phosphate-containing compound metabolic process [GO:0006796]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Expressed throughout plant development, with a lower expression in young plantes and a maximum during flowering. {ECO:0000303|Ref.8}. TISSUE SPECIFICITY: Expressed in all tissues tested. Highest expression in flowers, leaves and roots. Lower levels of expression in siliques, stems, ovary, stigma and pollen. {ECO:0000269|PubMed:15135060, ECO:0000303|Ref.8}. locus:2144766; AT5G09650 inorganic pyrophosphatase Os02g0768600 protein (Fragment),Os02g0768600 protein (Putative inorganic pyrophosphatase) (cDNA clone:006-201-B08, full insert sequence) (cDNA clone:006-311-D07, full insert sequence) Q0DX85,Q6ZGJ8 Q0DX85_ORYSJ,Q6ZGJ8_ORYSJ Os02g0768600 Os02g0768600 OSNPB_020768600,OJ1767_D02.15-2 Os02g0768600 OSNPB_020768600 ENOG411E0WK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch Os01g0873300 protein,Os02g0563000 protein A0A0P0VB25,A0A0N7KFI1 A0A0P0VB25_ORYSJ,A0A0N7KFI1_ORYSJ Os01g0873300 OSNPB_010873300,Os02g0563000 OSNPB_020563000 ENOG411E0WH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GED Os04g0381000 protein (Fragment) A0A0P0W9A2 A0A0P0W9A2_ORYSJ Os04g0381000 OSNPB_040381000 ENOG411E0WV Q9SIX2,Q9FX76 Q9SIX2_ARATH,Q9FX76_ARATH Transmembrane protein (Uncharacterized protein At2g16270),At1g16630 (F19K19.8 protein) (Hypothetical protei) (Transmembrane protein) 85089,93874 Transmembrane protein (Uncharacterized protein At2g16270),At1g16630 (F19K19.8 protein) (Hypothetical protei) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2042699;,locus:2017938; AT2G16270,AT1G16630 NA Expressed protein (Os03g0672400 protein) Q84R70 Q84R70_ORYSJ Os03g0672400 LOC_Os03g46920 Os03g0672400 OSJNBb0113I20.14 OSNPB_030672400 ENOG411E0WW AFR Q8LAW2 AFR_ARATH F-box protein AFR (Protein ATTENUATED FAR-RED RESPONSE) (SKP1-interacting partner 29) FUNCTION: Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure. {ECO:0000250, ECO:0000269|PubMed:14653999}. PATHWAY: Protein modification; protein ubiquitination. 41278 F-box protein AFR (Protein ATTENUATED FAR-RED RESPONSE) (SKP1-interacting partner 29) protein ubiquitination [GO:0016567]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585] locus:2046683; AT2G24540 F-box protein Kelch repeat containing F-box protein-like (Os06g0655500 protein) (cDNA clone:J023014H04, full insert sequence),Os06g0655500 protein (Fragment) Q67W96,A0A0P0WZE5 Q67W96_ORYSJ,A0A0P0WZE5_ORYSJ P0460H04.11-1 P0709F06.32-1 Os06g0655500 OSNPB_060655500,Os06g0655500 OSNPB_060655500 ENOG411E0WT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_like Os12g0615100 protein (Wall-associated kinase 3, putative, expressed) (cDNA clone:002-112-E04, full insert sequence),Os12g0615100 protein (Fragment),Os12g0614800 protein,Os12g0615300 protein (Fragment),Os03g0642600 protein,Os12g0614851 protein Q2QM73,A0A0P0YC18,A0A0P0YD44,A0A0N7KUD2,A0A0P0W1H4,A0A0P0YCF9,A0A0P0YC84 Q2QM73_ORYSJ,A0A0P0YC18_ORYSJ,A0A0P0YD44_ORYSJ,A0A0N7KUD2_ORYSJ,A0A0P0W1H4_ORYSJ,A0A0P0YCF9_ORYSJ,A0A0P0YC84_ORYSJ Os12g0615100 LOC_Os12g42060 OSNPB_120615100,Os12g0615100 OSNPB_120615100,Os12g0614800 OSNPB_120614800,Os12g0615300 OSNPB_120615300,Os03g0642600 OSNPB_030642600,Os12g0614851 OSNPB_120614851 ENOG411E0WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0259100 protein,Loricrin-like (Os02g0259100 protein) Q0E296,Q6K246 Q0E296_ORYSJ,Q6K246_ORYSJ Os02g0259100 Os02g0259100 OSNPB_020259100,B1178F07.7-2 Os02g0259100 OSJNBa0060K08.17-2 OSNPB_020259100 ENOG411E0WR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os10g0200700 protein) (cDNA clone:006-310-B07, full insert sequence),Expressed protein (Os03g0253600 protein) (cDNA clone:001-134-F05, full insert sequence) Q33AB2,Q10NZ3 Q33AB2_ORYSJ,Q10NZ3_ORYSJ LOC_Os10g12750 Os10g0200700 OSNPB_100200700,Os03g0253600 LOC_Os03g14880 Os03g0253600 OsJ_36634 OSNPB_030253600 ENOG411E0WS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain SPX domain-containing membrane protein Os09g0521800,Os09g0521800 protein (Fragment) B9FMX4,A0A0P0XPA5 SPXM4_ORYSJ,A0A0P0XPA5_ORYSJ Os09g0521800 LOC_Os09g34990 OsJ_17427/OsJ_17429 OSJNOa273B05.6,Os09g0521800 OSNPB_090521800 ENOG411E0WP HIPP37 A2RVM8,A0A1P8AVS3 HIP37_ARATH,A0A1P8AVS3_ARATH Heavy metal-associated isoprenylated plant protein 37 (AtHIP37),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 39312,46004 Heavy metal-associated isoprenylated plant protein 37 (AtHIP37),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2017709; AT1G23000 Heavy-metal-associated domain Os01g0125600 protein (cDNA clone:001-008-D10, full insert sequence) (p0044F08.14 protein) Q9AWU8 Q9AWU8_ORYSJ P0044F08.14 Os01g0125600 OSNPB_010125600 P0037C04.32 ENOG411E0WQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger Os09g0268600 protein,Os07g0598600 protein Q0J325,A0A0P0X8R0 Q0J325_ORYSJ,A0A0P0X8R0_ORYSJ Os09g0268600 Os09g0268600 OSNPB_090268600,Os07g0598600 OSNPB_070598600 ENOG411E0WZ SCD2,MQM1.3 Q8RWD5,Q8VZL1,A0A1P8BB69,A0A1P8BB67,F4KE93,F4JF62,A0A1I9LM32 SCD2_ARATH,Q8VZL1_ARATH,A0A1P8BB69_ARATH,A0A1P8BB67_ARATH,F4KE93_ARATH,F4JF62_ARATH,A0A1I9LM32_ARATH Coiled-coil domain-containing protein SCD2 (Protein STOMATAL CYTOKINESIS DEFECTIVE 2),Myosin (Uncharacterized protein At5g13260),Coiled-coil protein DISRUPTION PHENOTYPE: Defects in seedling development, root elongation, leaf expansion, flower morphogenesis and fertility due to defective cytokinesis in epidermal cells. {ECO:0000269|PubMed:24179130}. FUNCTION: Involved in growth and development through its role in cytokinesis and polarized cell expansion. Required for plasma membrane internalization. May function in clathrin-mediated membrane trafficking, including plasma membrane endocytosis, essential to both cytokinesis and cell expansion. {ECO:0000269|PubMed:24179130}. 63725,59716,64670,61498,64209,54089,47545 Coiled-coil domain-containing protein SCD2 (Protein STOMATAL CYTOKINESIS DEFECTIVE 2),Myosin (Uncharacterized protein At5g13260),Coiled-coil protein clathrin-coated vesicle [GO:0030136]; plasma membrane [GO:0005886]; cytokinesis by cell plate formation [GO:0000911]; multidimensional cell growth [GO:0009825]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in the mature region of the primary root, tips of short, young lateral roots, guard cells in the epidermis of cotyledons and rosette leaves, the socket cells surrounding the base of trichomes and hydathodes of fully expanded rosette leaves. {ECO:0000269|PubMed:24179130}. locus:2099423;,locus:2183876;,locus:2171646; AT3G48860,AT5G13260,AT5G23700 NA Os01g0928100 protein (cDNA clone:J023002A11, full insert sequence) Q5JK43 Q5JK43_ORYSJ Os01g0928100 Os01g0928100 OSJNBa0052O12.5 OSNPB_010928100 ENOG411E0WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0644000 protein (Fragment) A0A0P0Y4Q7 A0A0P0Y4Q7_ORYSJ Os11g0644000 OSNPB_110644000 ENOG411E0WY ILR3 Q9FH37 ILR3_ARATH Transcription factor ILR3 (Basic helix-loop-helix protein 105) (AtbHLH105) (bHLH 105) (Protein IAA-LEUCINE RESISTANT 3) (Transcription factor EN 133) (bHLH transcription factor bHLH105) DISRUPTION PHENOTYPE: Plants are more sensitive to IAA conjugates. {ECO:0000269|PubMed:17028341}. FUNCTION: Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. 25488 Transcription factor ILR3 (Basic helix-loop-helix protein 105) (AtbHLH105) (bHLH 105) (Protein IAA-LEUCINE RESISTANT 3) (Transcription factor EN 133) (bHLH transcription factor bHLH105) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; glucosinolate metabolic process [GO:0019760]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. locus:2157538; AT5G54680 Transcription factor BHLH transcription factor (Helix-loop-helix-like protein) (Os08g0138500 protein) (cDNA clone:J033115D14, full insert sequence),BHLH transcription factor (BHLH-HALZ myc like protein) (Os07g0543000 protein) (Putative bHLH protein) (cDNA clone:001-007-D03, full insert sequence),Os07g0543000 protein Q6ZKI8,Q7XXQ5,A0A0N7KNL9 Q6ZKI8_ORYSJ,Q7XXQ5_ORYSJ,A0A0N7KNL9_ORYSJ Os08g0138500 Os08g0138500 OJ1119_D01.9 OSNPB_080138500,OJ1729_E01.17-1 OsMYC1 Os07g0543000 OsJ_24621 OSNPB_070543000,Os07g0543000 OSNPB_070543000 ENOG411E0W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Transcription factor JAMYB (OsJAMyb) Q2QZJ8 JAMYB_ORYSJ JAMYB Os11g0684000 LOC_Os11g45740 FUNCTION: Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. ENOG411E0W7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os08g0253100 protein,Glycosyltransferase (EC 2.4.1.-),Os06g0192100 protein A3BR74,Q6ZF65,A0A0P0WU30 A3BR74_ORYSJ,Q6ZF65_ORYSJ,A0A0P0WU30_ORYSJ Os08g0253100 OsJ_26625 OSNPB_080253100,Os07g0148200 OsJ_23095 OSNPB_070148200 P0022E03.24,Os06g0192100 OSNPB_060192100 ENOG411E0W4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin response factor B3 domain-containing protein Os07g0183200,B3 domain-containing protein Os07g0183300/Os07g0183600,B3 domain-containing protein Os07g0183700,Auxin response factor 13,Putative auxin response factor 20,Auxin response factor,Os07g0183050 protein (Fragment) Q8H507,Q8H506,A3BH91,Q7XSS9,A3BH85,A0A0P0X2W6,A0A0P0X3L0 Y7832_ORYSJ,Y7833_ORYSJ,Y7838_ORYSJ,ARFM_ORYSJ,ARFT_ORYSJ,A0A0P0X2W6_ORYSJ,A0A0P0X3L0_ORYSJ Os07g0183200 LOC_Os07g08530 OJ1046_F10.104 OJ1506_G02.21,Os07g0183350 LOC_Os07g08540 OJ1046_F10.105 OJ1506_G02.22,Os07g0183700 Os07g0183866 Os07g0183932 LOC_Os07g08600 OJ1046_F10.111 OJ1506_G02.28 OsJ_23349,ARF13 Os04g0690600 LOC_Os04g59430 OSJNBa0039K24.27,ARF20 Os07g0183100 LOC_Os07g08520 OJ1046_F10.103 OJ1506_G02.20 OsJ_022407,Os07g0183100 OSNPB_070183100,Os07g0183050 OSNPB_070183050 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. ENOG411E0W5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 Os01g0268700 protein A0A0P0V0W9 A0A0P0V0W9_ORYSJ Os01g0268700 OSNPB_010268700 ENOG411E0W2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) (Fragment) Q5U1S8,A0A0P0V1X7 Q5U1S8_ORYSJ,A0A0P0V1X7_ORYSJ prx15 Os01g0327100 OSNPB_010327100,Os01g0327100 OSNPB_010327100 ENOG411E0W1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0276600 protein (Zinc finger protein-like),Os03g0286100 protein (Fragment) Q9SDG0,A0A0P0VWB9 Q9SDG0_ORYSJ,A0A0P0VWB9_ORYSJ Os01g0276600 OSNPB_010276600 P0038F12.24,Os03g0286100 OSNPB_030286100 ENOG411E0W8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0216000 protein,Os02g0214633 protein (Fragment) Q6YUZ6,A0A0P0VGE0 Q6YUZ6_ORYSJ,A0A0P0VGE0_ORYSJ B1307A11.13 Os02g0216000 OSNPB_020216000,Os02g0214633 OSNPB_020214633 ENOG411E0W9 DGP3 Q8H1F6 DGP3_ARATH DAR GTPase 3, chloroplastic (Protein EMBRYO DEFECTIVE 3129) Embryo defective; Globular-D. Meinke-2011 FUNCTION: GTPase that may function in chloroplast ribosome assembly (Probable). {ECO:0000305|PubMed:16849600}. 41722 DAR GTPase 3, chloroplastic (Protein EMBRYO DEFECTIVE 3129) chloroplast [GO:0009507]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome biogenesis [GO:0042254] locus:2140270; AT4G02790 Mitochondrial GTPase 1 Os05g0430400 protein (Putative GTP-binding protein) (cDNA clone:001-117-G09, full insert sequence) Q5TKI5 Q5TKI5_ORYSJ Os05g0430400 OsJ_18635 OSJNBb0048I21.12 OSNPB_050430400 ENOG411DS3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA La domain La domain containing protein, expressed (Os03g0859300 protein) (Putative extensin) (cDNA clone:001-116-H02, full insert sequence),La domain containing protein, expressed (Os03g0859300 protein) Q7Y1E1,Q10AA9 Q7Y1E1_ORYSJ,Q10AA9_ORYSJ Os03g0859300 LOC_Os03g64190 Os03g0859300 OsJ_13448 OSJNBa0033P04.1 OSNPB_030859300,Os03g0859300 LOC_Os03g64190 OSNPB_030859300 ENOG411DS3Q Q8S8E7,A0A1P8B2Z1,A0A1P8B2Y9,A0A1P8B2Z5,A8MR51 Q8S8E7_ARATH,A0A1P8B2Z1_ARATH,A0A1P8B2Y9_ARATH,A0A1P8B2Z5_ARATH,A8MR51_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (Expressed protein),Acyl-CoA N-acyltransferases (NAT) superfamily protein 24530,23491,23854,24185,21502 Acyl-CoA N-acyltransferases (NAT) superfamily protein (Expressed protein),Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity [GO:0008080] locus:505006237; AT2G04845 Acetyltransferase (GNAT) family Acetyltransferase, GNAT family protein, expressed (Os03g0194400 protein) Q10QJ2 Q10QJ2_ORYSJ Os03g0194400 LOC_Os03g09860 OSNPB_030194400 ENOG411DS3Z ETR2 Q0WPQ2,A0A1I9LQU7 ETR2_ARATH,A0A1I9LQU7_ARATH Ethylene receptor 2 (AtETR2) (EC 2.7.11.-) (Protein ETHYLENE RESPONSE 2) (Protein ETR2),Signal transduction histidine kinase, hybrid-type, ethylene sensor Abnormal trichome branching-S. Regan-2009 FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling. {ECO:0000269|PubMed:15703053}. MISCELLANEOUS: ETR2 is degraded by a proteasome-dependent pathway in response to ethylene binding. 2.7.11.- 85613,67367 Ethylene receptor 2 (AtETR2) (EC 2.7.11.-) (Protein ETHYLENE RESPONSE 2) (Protein ETR2),Signal transduction histidine kinase, hybrid-type, ethylene sensor endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ethylene binding [GO:0051740]; ethylene receptor activity [GO:0038199]; metal ion binding [GO:0046872]; phosphorelay sensor kinase activity [GO:0000155]; protein serine/threonine kinase activity [GO:0004674]; receptor activity [GO:0004872]; negative regulation of ethylene-activated signaling pathway [GO:0010105],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; phosphorelay sensor kinase activity [GO:0000155] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers, mature siliques, shoot apical meristems, leaf primordia, inflorescence meristems, young floral meristems, developing petals, carpels and ovules. Low expression in stamens. {ECO:0000269|PubMed:9576967, ECO:0000269|PubMed:9707532}. locus:2086208; AT3G23150 Ethylene receptor Ethylene receptor 3 (OsETR3) (EC 2.7.13.3) (OsPK2),Os06g0579350 protein,Os02g0820900 protein (Fragment),Os06g0579300 protein Q0DWC7,A0A0P0WYC8,A0A0P0VRH3,A0A0P0WYG6 ETR3_ORYSJ,A0A0P0WYC8_ORYSJ,A0A0P0VRH3_ORYSJ,A0A0P0WYG6_ORYSJ ETR3 Os02g0820900 LOC_Os02g57530 OJ1119_A01.4-1 P0474F11.19-1,Os06g0579350 OSNPB_060579350,Os02g0820900 OSNPB_020820900,Os06g0579300 OSNPB_060579300 DISRUPTION PHENOTYPE: Enhanced ethylene sensitivity and early flowering. {ECO:0000269|PubMed:19417056}. FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as negative regulator of ethylene signaling. May delay the transition from the vegetative stage to the floral stage by upregulating GI (GIGANTEA) and RCN1 and cause starch accumulation in stems by down-regulating the alpha-amylase AMY3D. {ECO:0000269|PubMed:19417056}. ENOG411DS3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os05g0596000 protein (cDNA clone:J023001F07, full insert sequence) (cDNA clone:J023099A02, full insert sequence) Q5TKF2 Q5TKF2_ORYSJ Os05g0596000 Os05g0596000 OSJNBa0030I14.14 OSJNBb0086G17.5 OSNPB_050596000 ENOG411DS3G SHT O64470 SHT_ARATH Spermidine hydroxycinnamoyl transferase (EC 2.3.1.-) (BAHD-like hydroxycinnamoyl transferase) DISRUPTION PHENOTYPE: Glossy and sticky pollen, but very little changes in the exine patterns. Drastic reduction in flower buds of the content in N1,N5,N10-tri-(hydroxyferuloyl)-spermidine and N1,N5-di(hydroxyferuloyl)-N10-sinapoyl-spermidine. {ECO:0000269|PubMed:19077165, ECO:0000269|PubMed:19762055, ECO:0000269|PubMed:20827470, ECO:0000269|PubMed:21849515}. FUNCTION: Hydroxycinnamoyl transferase involved in the conjugation of feruloyl CoA to spermidine. Able to perform all three conjugating steps required for the biosynthesis of N1,N5,N10-triferuloyl-spermidine. Spermidine is the only acceptor substrate while feruloyl CoA > caffeoyl CoA > coumaroyl CoA > cinnamoyl CoA >> sinapoyl CoA are efficient acyl donors. No activity with hydroxyferuloyl CoA. {ECO:0000269|PubMed:19077165, ECO:0000269|PubMed:19762055}. ARA:AT2G19070-MONOMER;MetaCyc:AT2G19070-MONOMER; 2.3.1.- 50435 Spermidine hydroxycinnamoyl transferase (EC 2.3.1.-) (BAHD-like hydroxycinnamoyl transferase) N-acyltransferase activity [GO:0016410]; spermidine:caffeoyl CoA N-acyltransferase activity [GO:0080074]; spermidine:coumaroyl CoA N-acyltransferase activity [GO:0080073]; spermidine:feruloyl CoA N-acyltransferase activity [GO:0080075]; spermidine:sinapoyl CoA N-acyltransferase activity [GO:0080072]; pollen development [GO:0009555]; pollen exine formation [GO:0010584]; spermidine hydroxycinnamate conjugate biosynthetic process [GO:0080088] DEVELOPMENTAL STAGE: Expressed during bud growth and diappears when the flower opens. {ECO:0000269|PubMed:19077165}. TISSUE SPECIFICITY: Expressed in flower buds and inflorescences. Restricted to anther tapetum. {ECO:0000269|PubMed:19077165, ECO:0000269|PubMed:19762055}. locus:2059109; AT2G19070 shikimate quinate hydroxycinnamoyltransferase-like NA NA NA NA NA NA NA ENOG411DS3D EMB2247 F4KE63 SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.9) (Protein EMBRYO DEFECTIVE 2247) (Valyl-tRNA synthetase) (ValRS) DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at the globular stage. {ECO:0000305|PubMed:16297076}. Embryo defective; Globular-D. Meinke-2003 6.1.1.9 110629 Valine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.9) (Protein EMBRYO DEFECTIVE 2247) (Valyl-tRNA synthetase) (ValRS) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; valine-tRNA ligase activity [GO:0004832]; embryo development ending in seed dormancy [GO:0009793]; valyl-tRNA aminoacylation [GO:0006438] locus:505006620; AT5G16715 Valyl tRNA synthetase tRNA binding arm Os07g0163500 protein (Fragment) Q0D8F6 Q0D8F6_ORYSJ Os07g0163500 Os07g0163500 OSNPB_070163500 ENOG411DS3B F4IBV1,Q8L9B0,A8MS14,F4IBV0 F4IBV1_ARATH,Q8L9B0_ARATH,A8MS14_ARATH,F4IBV0_ARATH Pathogenesis-related family protein,Pathogenesis-related family protein (Pathogenesis-related protein-like protein) 28581,27283,26941,19968 Pathogenesis-related family protein,Pathogenesis-related family protein (Pathogenesis-related protein-like protein) locus:2037503; AT1G78780 Inherit from NOG: Pathogenesis related protein-like protein Os01g0731100 protein (Putative infection-related protein) (cDNA clone:001-206-D09, full insert sequence) (cDNA clone:006-303-D12, full insert sequence) (cDNA clone:006-308-E01, full insert sequence),Os01g0731600 protein Q94EA4,A0A0P0V7U9 Q94EA4_ORYSJ,A0A0P0V7U9_ORYSJ Os01g0731100 Os01g0731100 OsJ_03350 OSNPB_010731100 P0435H01.33,Os01g0731600 OSNPB_010731600 ENOG411DS3C Q9ZQ26 Q9ZQ26_ARATH AT2G24420 protein (At2g24420/T28I24.15) (DNA repair ATPase-like protein) (Expressed protein) 50352 AT2G24420 protein (At2g24420/T28I24.15) (DNA repair ATPase-like protein) (Expressed protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774] locus:2061067; AT2G24420 Inherit from euNOG: DNA repair ATPase-related Os08g0519400 protein (Putative stress related-like protein interactor) Q6ZBK6 Q6ZBK6_ORYSJ Os08g0519400 Os08g0519400 OSNPB_080519400 P0689E12.19 ENOG411DS3A Q6NM29,F4JKP9,A0A1P8B1U2,A0A1P8B1U7 Q6NM29_ARATH,F4JKP9_ARATH,A0A1P8B1U2_ARATH,A0A1P8B1U7_ARATH At2g15730 (P-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein 39804,39594,36067,34330 At2g15730 (P-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2053578;,locus:2116229; AT2G15730,AT4G34420 Nodulation protein Os01g0784600 protein (cDNA clone:J013109O21, full insert sequence),Nodulation protein, putative, expressed (Os03g0394900 protein) (cDNA clone:J033136I20, full insert sequence),Os03g0394900 protein Q5ZAK9,Q10K64,A0A0P0VYF1 Q5ZAK9_ORYSJ,Q10K64_ORYSJ,A0A0P0VYF1_ORYSJ Os01g0784600 B1070A12.11 OSNPB_010784600,LOC_Os03g27760 Os03g0394900 OsJ_11141 OSNPB_030394900,Os03g0394900 OSNPB_030394900 ENOG411DS3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 36 (OsC3H36),Os05g0497500 protein Q75K81,A0A0P0WP07 C3H36_ORYSJ,A0A0P0WP07_ORYSJ Os05g0497500 LOC_Os05g41790 OJ1118_C04.11 OsJ_018290 P0010D04.1,Os05g0497500 OSNPB_050497500 ENOG411DS3M CYP71A14,CYP71A19,CYP71A26,CYP76C2,CYP71A24,CYP71A28,CYP71A13,CYP71A23,CYP71A27,CYP71A12,CYP71A16,CYP71A20,CYP76C1,CYP71A18,CYP71A21,CYP71A25,CYP71A15,CYP71A22 P58045,Q9T0K0,Q9STK7,O64637,Q9STK9,P58047,O49342,Q9STL0,O65438,O49340,Q9FH66,Q9T0K2,O64636,Q9SAB6,Q9STL2,Q9STK8,P58046,Q9STL1,A0A1P8B7L6,A0A1P8B586,F4I8Y7,F4JDX0,F4JT00,A0A1P8BF27,A0A1I9LLC1 C71AE_ARATH,C71AJ_ARATH,C71AQ_ARATH,C76C2_ARATH,C71AO_ARATH,C71AS_ARATH,C71AD_ARATH,C71AN_ARATH,C71AR_ARATH,C71AC_ARATH,C71AG_ARATH,C71AK_ARATH,C76C1_ARATH,C71AI_ARATH,C71AL_ARATH,C71AP_ARATH,C71AF_ARATH,C71AM_ARATH,A0A1P8B7L6_ARATH,A0A1P8B586_ARATH,F4I8Y7_ARATH,F4JDX0_ARATH,F4JT00_ARATH,A0A1P8BF27_ARATH,A0A1I9LLC1_ARATH Cytochrome P450 71A14 (EC 1.14.-.-),Cytochrome P450 71A19 (EC 1.14.-.-),Cytochrome P450 71A26 (EC 1.14.-.-),Cytochrome P450 76C2 (EC 1.14.-.-) (Protein YELLOW-LEAF-SPECIFIC GENE 6),Cytochrome P450 71A24 (EC 1.14.-.-),Putative cytochrome P450 71A28 (EC 1.14.-.-),Indoleacetaldoxime dehydratase (EC 4.99.1.6) (Cytochrome P450 71A13),Cytochrome P450 71A23 (EC 1.14.-.-),Cytochrome P450 71A27 (EC 1.14.-.-),Cytochrome P450 71A12 (EC 1.14.-.-),Cytochrome P450 71A16 (EC 1.14.-.-),Cytochrome P450 71A20 (EC 1.14.-.-),Cytochrome P450 76C1 (EC 1.14.-.-),Cytochrome P450 71A18 (EC 1.14.-.-),Cytochrome P450 71A21 (EC 1.14.-.-),Cytochrome P450 71A25 (EC 1.14.-.-),Cytochrome P450 71A15 (EC 1.14.-.-),Cytochrome P450 71A22 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily A, polypeptide 27,Cytochrome P450, family 71, subfamily A, polypeptide 28,Cytochrome P450, family 71, subfamily A, polypeptide 18,Cytochrome P450, family 71, subfamily A, polypeptide 24,Cytochrome P450, family 71, subfamily A, polypeptide 20,Cytochrome P450, family 71, subfamily A, polypeptide 14,Cytochrome P450, family 71, subfamily A, polypeptide 23 DISRUPTION PHENOTYPE: 90% decrease of all indole-3-carbonyl nitrile (ICN) derivatives and increased susceptibility to virulent Pseudomonas syringae. {ECO:0000269|PubMed:26352477}. No visible phenotype.,When droplets of the necrotrophic fungi Alternaria brassicicola (10 ;L) containing 105 spores/mL were placed on the third fourth and fifth true leaves of each plant wild-type plants developed necrotic spots at the sites of the inoculation droplets whereas cyp71A13 mutants developed spreading necrotic lesions.,When indole-3-acetonitrile (IAN) was applied to silver nitrate-treated cyp71A13 leaves camalexin levels were approximately sixfold higher than when water was applied.,When infected with Alternaria brassicicola or Pseudomonas syringae camalexin levels in infected cyp71A13 mutants were <20% of wild-type levels even though the ratio of infected to uninfected leaf area was much larger in the mutants than in the wild type.,When camalexin was determined two days after infection with Pseudomonas syringae no reduction in camalexin levels relative to wild-type plants was observed. Susceptible to Alternaria brassicicola-J. Glazebrook-2007 FUNCTION: Involved in the biosynthesis of the indole-derived phytoalexin camalexin. Catalyzes the conversion of indole-3-acetaldoxime to indole-3-acetonitrile. Required for resistance to A.brassicicola and B.cinerea. {ECO:0000269|PubMed:17573535, ECO:0000269|PubMed:19154205}.,FUNCTION: Converts indole-3-acetaldoxime to indole cyanohydrin. Involved in the biosynthetic pathway to 4-hydroxyindole-3-carbonyl nitrile (4-OH-ICN), a cyanogenic metabolite required for inducible pathogen defense. {ECO:0000269|PubMed:26352477}. ARA:AT3G48270-MONOMER;,ARA:AT2G45570-MONOMER;,ARA:AT3G48290-MONOMER;,ARA:AT2G30770-MONOMER;MetaCyc:AT2G30770-MONOMER;,ARA:AT3G48300-MONOMER;,ARA:AT4G20240-MONOMER;,ARA:AT2G45560-MONOMER;,ARA:AT3G48320-MONOMER;,ARA:AT3G48280-MONOMER;,ARA:AT3G48310-MONOMER; 1.14.-.-,4.99.1.6 56846,55615,55833,57257,56006,58216,56086,54761,57087,56152,55628,56498,56801,56277,55608,55784,56356,55999,45557,16695,57379,59133,44453,45813,55006 Cytochrome P450 71A14 (EC 1.14.-.-),Cytochrome P450 71A19 (EC 1.14.-.-),Cytochrome P450 71A26 (EC 1.14.-.-),Cytochrome P450 76C2 (EC 1.14.-.-) (Protein YELLOW-LEAF-SPECIFIC GENE 6),Cytochrome P450 71A24 (EC 1.14.-.-),Putative cytochrome P450 71A28 (EC 1.14.-.-),Indoleacetaldoxime dehydratase (EC 4.99.1.6) (Cytochrome P450 71A13),Cytochrome P450 71A23 (EC 1.14.-.-),Cytochrome P450 71A27 (EC 1.14.-.-),Cytochrome P450 71A12 (EC 1.14.-.-),Cytochrome P450 71A16 (EC 1.14.-.-),Cytochrome P450 71A20 (EC 1.14.-.-),Cytochrome P450 76C1 (EC 1.14.-.-),Cytochrome P450 71A18 (EC 1.14.-.-),Cytochrome P450 71A21 (EC 1.14.-.-),Cytochrome P450 71A25 (EC 1.14.-.-),Cytochrome P450 71A15 (EC 1.14.-.-),Cytochrome P450 71A22 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily A, polypeptide 27,Cytochrome P450, family 71, subfamily A, polypeptide 28,Cytochrome P450, family 71, subfamily A, polypeptide 18,Cytochrome P450, family 71, subfamily A, polypeptide 24,Cytochrome P450, family 71, subfamily A, polypeptide 20,Cytochrome P450, family 71, subfamily A, polypeptide 14,Cytochrome P450, family 71, subfamily A, polypeptide 23 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; indoleacetaldoxime dehydratase activity [GO:0047720]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response [GO:0006952],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571}. locus:2149383;,locus:2142055;,locus:504955639;,locus:2043605;,locus:504955634;,locus:2152701;,locus:2142075;,locus:2043699;,locus:504955642;,locus:504955637;,locus:2149373;,locus:504955640;,locus:2027407;,locus:504955636; AT5G24960,AT4G13290,AT3G48270,AT2G45570,AT3G48290,AT4G20235,AT2G30770,AT3G48300,AT4G20240,AT2G30750,AT5G42590,AT4G13310,AT2G45560,AT1G11610,AT3G48320,AT3G48280,AT5G24950,AT3G48310 cytochrome P450 Cytochrome P450 family protein, expressed (Os11g0465200 protein) (cDNA clone:J013043F18, full insert sequence),Os01g0544200 protein (cDNA clone:J013039G14, full insert sequence),Os08g0106000 protein,Os01g0544200 protein,Os08g0106300 protein,Os11g0465200 protein (Fragment),Os11g0469900 protein Q2R4P9,B7F5M5,A0A0P0XAP4,A0A0N7KD44,A0A0P0XAX3,A0A0P0Y2C2,A0A0P0Y224 Q2R4P9_ORYSJ,B7F5M5_ORYSJ,A0A0P0XAP4_ORYSJ,A0A0N7KD44_ORYSJ,A0A0P0XAX3_ORYSJ,A0A0P0Y2C2_ORYSJ,A0A0P0Y224_ORYSJ LOC_Os11g27730 Os11g0465200 OSNPB_110465200,Os01g0544200 OSNPB_010544200,Os08g0106000 OSNPB_080106000,Os08g0106300 OSNPB_080106300,Os11g0465200 OSNPB_110465200,Os11g0469900 OSNPB_110469900 ENOG411DS37 Q9SQN5,F4HQA2 Q9SQN5_ARATH,F4HQA2_ARATH F20B17.17 (HAT transposon superfamily) (Uncharacterized protein F19K16.28),HAT transposon superfamily 58831,73759 F20B17.17 (HAT transposon superfamily) (Uncharacterized protein F19K16.28),HAT transposon superfamily nucleic acid binding [GO:0003676]; protein dimerization activity [GO:0046983],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2017864; AT1G79740 Protein of unknown function (DUF 659) Os01g0222700 protein (cDNA clone:J013170M12, full insert sequence) Q0JPH5 Q0JPH5_ORYSJ Os01g0222700 Os01g0222700 OSNPB_010222700 ENOG411DS34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cellulose synthase-like Probable mixed-linked glucan synthase 6 (EC 2.4.1.-) (1,3;1,4-beta-D-glucan synthase 6) (Cellulose synthase-like protein F6) (OsCslF6),Cellulose synthase-1-like protein (Os08g0160500 protein) Q84UP7,Q7EYE9 CSLF6_ORYSJ,Q7EYE9_ORYSJ CSLF6 Os08g0160500 LOC_Os08g06380 OsJ_025078 P0577B11.104-1 P0672D01.120-1,P0577B11.104-2 Os08g0160500 P0672D01.120-2 OSNPB_080160500 FUNCTION: May catalyze both beta-1,3 and beta-1,4 glycosidic linkage on beta-D-glucan. Essential for (1,3;1,4)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats, wheat, rice and barley. They can account for up to 70% by weight of the wall (By similarity). {ECO:0000250}. ENOG411DS35 Q8RXK3,F4J9B1 Q8RXK3_ARATH,F4J9B1_ARATH Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein (Uncharacterized protein At3g53270),Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein 32455,32327 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein (Uncharacterized protein At3g53270),Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein snRNA-activating protein complex [GO:0019185]; sequence-specific DNA binding [GO:0043565]; snRNA transcription from RNA polymerase II promoter [GO:0042795]; snRNA transcription from RNA polymerase III promoter [GO:0042796] locus:2101988; AT3G53270 Small nuclear RNA activating complex (SNAPc) subunit SNAP43 Expressed protein (Os10g0493800 protein) Q8LNT0 Q8LNT0_ORYSJ OSJNBa0041P03.7 LOC_Os10g35130 Os10g0493800 OsJ_32009 OSNPB_100493800 ENOG411DS32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PA domain Os07g0680000 protein (Putative vacuolar targeting receptor) (cDNA clone:J023134F15, full insert sequence) Q7XHX6 Q7XHX6_ORYSJ Os07g0680000 Os07g0680000 OJ1205_F02.19 OsJ_25594 OSJNBa0008J01.6 OSNPB_070680000 ENOG411DS33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE associated Golgi protein Os07g0634000 protein A0A0P0X9A4 A0A0P0X9A4_ORYSJ Os07g0634000 OSNPB_070634000 ENOG411DS30 WIN2 Q8LAY8,Q8RXV3,Q4PSE8,A0A1P8B4X7 P2C69_ARATH,P2C59_ARATH,P2C71_ARATH,A0A1P8B4X7_ARATH Probable protein phosphatase 2C 69 (AtPP2C69) (EC 3.1.3.16),Probable protein phosphatase 2C 59 (AtPP2C59) (EC 3.1.3.16) (HopW1-1-interacting protein 2) (Protein phosphatase 2C WIN2) (PP2C WIN2),Probable protein phosphatase 2C 71 (AtPP2C71) (EC 3.1.3.16),HOPW1-1-interacting 2 FUNCTION: Protein phosphatase that modulates defense response to pathogenic bacteria, conferring resistance and promoting salicylic acid (SA) accumulation. {ECO:0000269|PubMed:18266921}. 3.1.3.16 38036,33248,48120,32764 Probable protein phosphatase 2C 69 (AtPP2C69) (EC 3.1.3.16),Probable protein phosphatase 2C 59 (AtPP2C59) (EC 3.1.3.16) (HopW1-1-interacting protein 2) (Protein phosphatase 2C WIN2) (PP2C WIN2),Probable protein phosphatase 2C 71 (AtPP2C71) (EC 3.1.3.16),HOPW1-1-interacting 2 metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; defense response to bacterium [GO:0042742]; interspecies interaction between organisms [GO:0044419]; protein dephosphorylation [GO:0006470],apoplast [GO:0048046]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2183695;,locus:2124784;,locus:2149363; AT5G10740,AT4G31750,AT5G24940 phosphatase 2C Probable protein phosphatase 2C 10 (OsPP2C10) (EC 3.1.3.16),Probable protein phosphatase 2C 45 (OsPP2C45) (EC 3.1.3.16),Probable protein phosphatase 2C 59 (OsPP2C59) (EC 3.1.3.16),Os06g0698300 protein Q67UX7,Q7XR06,Q5Z6F5,A0A0N7KMN4 P2C10_ORYSJ,P2C45_ORYSJ,P2C59_ORYSJ,A0A0N7KMN4_ORYSJ Os02g0149800 LOC_Os02g05630 OSJNBa0050G13.3,Os04g0659500 LOC_Os04g56450 OsJ_015762 OSJNBa0011F23.20 OSJNBa0015K02.7,Os06g0698300 LOC_Os06g48300 OsJ_021637 P0028E05.39,Os06g0698300 OSNPB_060698300 ENOG411EA1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA atkt1 atkt1p atkup1 kup1 atkt1 (potassium transporter 1) NA NA NA NA NA NA NA ENOG411EF1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: diacylglycerol lipase NA NA NA NA NA NA NA ENOG411EG75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein 1589 of unknown function (A_thal_3526) NA NA NA NA NA NA NA ENOG411EF45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formamidopyrimidine-DNA glycosylase H2TH domain NA NA NA NA NA NA NA ENOG411EF40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF1H ATG8E Q8S926 ATG8E_ARATH Autophagy-related protein 8e (Autophagy-related ubiquitin-like modifier ATG8e) (AtAPG8e) (Protein autophagy 8e) FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. 13947 Autophagy-related protein 8e (Autophagy-related ubiquitin-like modifier ATG8e) (AtAPG8e) (Protein autophagy 8e) autophagosome [GO:0005776]; autophagosome membrane [GO:0000421]; cytoplasm [GO:0005737]; cytoplasmic vesicle [GO:0031410]; membrane [GO:0016020]; microtubule [GO:0005874]; autophagy [GO:0006914]; cellular response to nitrogen starvation [GO:0006995]; cellular response to starvation [GO:0009267]; protein transport [GO:0015031] TISSUE SPECIFICITY: Contitutively expressed. {ECO:0000269|PubMed:15494556}. locus:2055537; AT2G45170 Pfam:MAP1_LC3 NA NA NA NA NA NA NA ENOG411EA12 Q9SGR3,Q9LMV9 Q9SGR3_ARATH,Q9LMV9_ARATH At1g76210 (DUF241 domain protein, putative (DUF241)) (T23E18.14),DUF241 domain protein, putative (DUF241) (F5M15.16) 25921,26188 At1g76210 (DUF241 domain protein, putative (DUF241)) (T23E18.14),DUF241 domain protein, putative (DUF241) (F5M15.16) locus:2199731;,locus:2034381; AT1G76210,AT1G20520 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411EJZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411E5N6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA H15 NA NA NA NA NA NA NA ENOG411E5N0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0395700 protein (Fragment) A0A0P0VYC0 A0A0P0VYC0_ORYSJ Os03g0395700 OSNPB_030395700 ENOG411E5N8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) NA NA NA NA NA NA NA ENOG411E5N9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh EF hand family protein (Os11g0600500 protein) Q2R1L7 Q2R1L7_ORYSJ Os11g0600500 LOC_Os11g38780 Os11g0600500 OsJ_34436 OSNPB_110600500 ENOG411E5ND WOX5,WOX7 Q8H1D2,Q9FFK0 WOX5_ARATH,WOX7_ARATH WUSCHEL-related homeobox 5,WUSCHEL-related homeobox 7 DISRUPTION PHENOTYPE: Abnormal quiescent center (QC) in the root apical meristem (RAM) and defects in cell differentiation. {ECO:0000269|PubMed:25631790}. FUNCTION: Transcription factor, which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:25631790}.,FUNCTION: Potential transcription factor that plays a central role during developmental processes. {ECO:0000250}. 21226,13997 WUSCHEL-related homeobox 5,WUSCHEL-related homeobox 7 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; maintenance of root meristem identity [GO:0010078]; positive regulation of stem cell population maintenance [GO:1902459]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Specifically expressed in the hypophysis of the majority of early globular embryos, approximately one round of cell division after the 16-cell stage, but never at the 16-cell stage itself. After the division of the hypophysis, it is detected in the upper lens-shaped cell that gives rise to the QC, but not in the lower daughter cell that gives rise to the central root cap. Subsequently, in heart stage and bent cotyledon stage embryos, it is detected in the four cells of the QC, which are the direct descendants of the lens-shaped cell. Also expressed in patches of cells that appeared associated with the vascular primordium of the cotyledons. This expression is strongest in late heart stage embryos and then gradually decreases. {ECO:0000269|PubMed:14711878}. TISSUE SPECIFICITY: Specifically expressed in the central cells of a quiescent center (QC) of the root. {ECO:0000269|PubMed:14711878}. locus:2074638;,locus:2166434; AT3G11260,AT5G05770 WUSCHEL-related homeobox WUSCHEL-related homeobox 9 (OsWOX9) (Protein WOX5) (Quiescent-specific homeobox protein) Q8W0F1 WOX9_ORYSJ WOX9 QHB WOX5 Os01g0854500 LOC_Os01g63510 B1096A10.8 OsJ_004011 P0529E05.42 FUNCTION: Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}. ENOG411E5NG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0534950 protein,Os06g0534900 protein A0A0P0WXB7,A0A0P0WXK7 A0A0P0WXB7_ORYSJ,A0A0P0WXK7_ORYSJ Os06g0534950 OSNPB_060534950,Os06g0534900 OSNPB_060534900 ENOG411E5NB F4K464 F4K464_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 31819 Tetratricopeptide repeat (TPR)-like superfamily protein locus:2149314; AT5G20190 NA NA NA NA NA NA NA NA ENOG411E5NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rare lipoprotein A (RlpA)-like double-psi beta-barrel NA NA NA NA NA NA NA ENOG411E5NK F4ISV2 F4ISV2_ARATH EXS (ERD1/XPR1/SYG1) family protein 54053 EXS (ERD1/XPR1/SYG1) family protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021] locus:504955935; AT2G32295 EXS family NA NA NA NA NA NA NA ENOG411E5NU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) Os02g0543800 protein (Fragment) A0A0P0VK31 A0A0P0VK31_ORYSJ Os02g0543800 OSNPB_020543800 ENOG411E5NP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Expressed protein (Os11g0678200 protein) (cDNA clone:002-140-B12, full insert sequence),Os11g0678301 protein (Fragment) Q2QZP4,A0A0P0Y585 Q2QZP4_ORYSJ,A0A0P0Y585_ORYSJ Os11g0678200 LOC_Os11g45290 Os11g0678200 OsJ_34820 OSNPB_110678200,Os11g0678301 OSNPB_110678301 ENOG411E5NQ RPL28 O22795 RK28_ARATH 50S ribosomal protein L28, chloroplastic (CL28) DISRUPTION PHENOTYPE: Seedling lethality. Albino seedlings unable to grow under photoautotrophic conditions. {ECO:0000269|PubMed:22900828}. 16033 50S ribosomal protein L28, chloroplastic (CL28) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2051023; AT2G33450 50S ribosomal protein L28 Os05g0101400 protein (Putative ribosomal protein L28) (cDNA clone:J013107H14, full insert sequence),Os05g0101400 protein (Fragment) Q9FW34,A0A0P0WGS3 Q9FW34_ORYSJ,A0A0P0WGS3_ORYSJ Os05g0101400 OsJ_16775 OSJNBb0098I11.9 OSNPB_050101400 P0036D10.8,Os05g0101400 OSNPB_050101400 ENOG411E5NS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5NY O82368,F4KA16 Y2988_ARATH,F4KA16_ARATH Uncharacterized protein At2g29880,Myb/SANT-like DNA-binding domain protein 35622,19467 Uncharacterized protein At2g29880,Myb/SANT-like DNA-binding domain protein DNA binding [GO:0003677] locus:2052070;,locus:2184231; AT2G29880,AT5G28820 Inherit from euNOG: at2g29880 (e NA NA NA NA NA NA NA ENOG411E5NZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E357 BPC2,BPC1 Q9LDE2,Q9SKD0 BPC2_ARATH,BPC1_ARATH Protein BASIC PENTACYSTEINE2 (AtBPC2) (GAGA-binding transcriptional activator BBR/BPC2),Protein BASIC PENTACYSTEINE1 (AtBPC1) FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.,FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. 31169,31648 Protein BASIC PENTACYSTEINE2 (AtBPC2) (GAGA-binding transcriptional activator BBR/BPC2),Protein BASIC PENTACYSTEINE1 (AtBPC1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of developmental process [GO:0050793]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; regulation of developmental process [GO:0050793]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.,TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. locus:2823945;,locus:2045842; AT1G14685,AT2G01930 GAGA-binding protein Barley B recombinant-like protein B (BBR-like protein B) (GAGA-binding transcriptional activator BBR-B),Barley B recombinant-like protein A (BBR-like protein A) (GAGA-binding transcriptional activator BBR-A),Barley B recombinant-like protein C (BBR-like protein C) (GAGA-binding transcriptional activator BBR-C),Os10g0115500 protein P0DH89,P0DH88,Q7XH85,A0A0P0XRW0 BBRB_ORYSJ,BBRA_ORYSJ,BBRC_ORYSJ,A0A0P0XRW0_ORYSJ Os10g0115200 LOC_Os10g02584 OSJNBa0092N12.5,Os10g0114500 LOC_Os10g02509 OJ1014H12.2 OsJ_30525 OSJNBa0092N12.11,Os10g0115500 LOC_Os10g02620 OsJ_30527 OSJNBa0092N12.3,Os10g0115500 OSNPB_100115500 FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. ENOG411E25A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain B3 domain-containing protein Os03g0622200,B3 domain-containing protein Os03g0622100 Q10GM3,Q10GM4 Y3222_ORYSJ,Y3221_ORYSJ Os03g0622200 LOC_Os03g42430 OsJ_11768 OSJNBb0111B07.22,Os03g0622100 LOC_Os03g42420 OSJNBb0111B07.22 ENOG411EJ5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L40e family Os09g0452700 protein (Putative ubiquitin / ribosomal protein CEP52),Os07g0493033 protein (Fragment) Q67V00,A0A0P0X666 Q67V00_ORYSJ,A0A0P0X666_ORYSJ Os09g0452700 OsJ_29596 OSNPB_090452700 P0488D02.15,Os07g0493033 OSNPB_070493033 ENOG411E3GW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) Fiber protein Fb34, putative, expressed (Os10g0495900 protein) Q8H8J9 Q8H8J9_ORYSJ Os10g0495900 LOC_Os10g35294 OsJ_32025 OSJNBa0066I08.2 OSNPB_100495900 ENOG411E3GV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA salt tolerance-like protein At1g78600-like NA NA NA NA NA NA NA ENOG411E3GC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os09g0557900 protein (cDNA clone:002-135-G04, full insert sequence) (cDNA clone:002-151-D03, full insert sequence) Q653S5 Q653S5_ORYSJ Os09g0557900 OJ1065_E04.1 OsJ_30310 OSNPB_090557900 ENOG411E3G0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0180500 protein Q5KQK2 Q5KQK2_ORYSJ Os05g0180500 OSNPB_050180500 P0453H11.5 ENOG411E3G4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os11g0205500 protein),Os12g0193800 protein,Os12g0193501 protein,Os11g0205500 protein (Fragment),Os12g0105000 protein,Os11g0105200 protein Q53LJ8,B9GC95,A0A0P0Y7T6,A0A0P0Y014,A0A0P0Y6I4,A0A0P0XYE3 Q53LJ8_ORYSJ,B9GC95_ORYSJ,A0A0P0Y7T6_ORYSJ,A0A0P0Y014_ORYSJ,A0A0P0Y6I4_ORYSJ,A0A0P0XYE3_ORYSJ Os11g0205500 LOC_Os11g09940 Os11g0205500 OSNPB_110205500,Os12g0193800 OsJ_35500 OSNPB_120193800,Os12g0193501 OSNPB_120193501,Os11g0205500 OSNPB_110205500,Os12g0105000 OSNPB_120105000,Os11g0105200 OSNPB_110105200 ENOG411E3G6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein NA NA NA NA NA NA NA ENOG411EF4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EGDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EGDF WRKY29 Q9SUS1 WRK29_ARATH Probable WRKY transcription factor 29 (WRKY DNA-binding protein 29) FUNCTION: Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. MISCELLANEOUS: Acts downstream a MAPK cascade and therefore might be regulated by phosphorylation. WRKY 22 and WRKY 29 may provide redundant functions. 33770 Probable WRKY transcription factor 29 (WRKY DNA-binding protein 29) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2128389; AT4G23550 transcription factor NA NA NA NA NA NA NA ENOG411EGDG ERF095 Q9LTC6 ERF95_ARATH Ethylene-responsive transcription factor ERF095 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 15708 Ethylene-responsive transcription factor ERF095 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2086203; AT3G23220 AP2 NA NA NA NA NA NA NA ENOG411EGDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EGDB SPH26 Q9FJ04 SPH26_ARATH S-protein homolog 26 22274 S-protein homolog 26 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] AT5G37785 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EGDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like NA NA NA NA NA NA NA ENOG411EGDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0790801 protein,Os10g0138150 protein,Os03g0791050 protein A0A0N7KI68,A0A0N7KRE9,A0A0P0W4K5 A0A0N7KI68_ORYSJ,A0A0N7KRE9_ORYSJ,A0A0P0W4K5_ORYSJ Os03g0790801 OSNPB_030790801,Os10g0138150 OSNPB_100138150,Os03g0791050 OSNPB_030791050 ENOG411EGDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DoH NA NA NA NA NA NA NA ENOG411EGDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein Os11g0197600-like NA NA NA NA NA NA NA ENOG411EGDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGDJ A0A1P8B058,A0A1P8AXF5,A0A1P8AX99,A0A1P8AX97,B3H6S6,F4IKW3 A0A1P8B058_ARATH,A0A1P8AXF5_ARATH,A0A1P8AX99_ARATH,A0A1P8AX97_ARATH,B3H6S6_ARATH,F4IKW3_ARATH Agamous-like MADS-box protein 36883,27316,21127,20021,26517,48765 Agamous-like MADS-box protein vacuole [GO:0005773] locus:4515102979;,locus:2060545; AT2G41445,AT2G41470 NA NA NA NA NA NA NA NA ENOG411EGDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Os10g0391801 protein A0A0P0XTY3 A0A0P0XTY3_ORYSJ Os10g0391801 OSNPB_100391801 ENOG411EGDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0490300 protein A0A0P0XVZ8 A0A0P0XVZ8_ORYSJ Os10g0490300 OSNPB_100490300 ENOG411EGDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0110050 protein,Os11g0109950 protein A0A0P0Y662,A0A0P0XY03 A0A0P0Y662_ORYSJ,A0A0P0XY03_ORYSJ Os12g0110050 OSNPB_120110050,Os11g0109950 OSNPB_110109950 ENOG411EGDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-like transcription factor-like (Os06g0258200 protein),Myb-like transcription factor-like (Os07g0434300 protein),Myb-like transcription factor-like (Os02g0724400 protein),Myb-like transcription factor-like (Os06g0258500 protein),Myb-like transcription factor-like (Os06g0250760 protein),Os10g0350400 protein,Os01g0210200 protein,Os10g0350200 protein,Os07g0434125 protein (Fragment) Q652S8,Q6Z3W3,Q6Z5L1,Q652S6,Q653P2,A0A0P0XT38,A0A0P0UZP4,A0A0N7KRM8,A0A0P0X5E5 Q652S8_ORYSJ,Q6Z3W3_ORYSJ,Q6Z5L1_ORYSJ,Q652S6_ORYSJ,Q653P2_ORYSJ,A0A0P0XT38_ORYSJ,A0A0P0UZP4_ORYSJ,A0A0N7KRM8_ORYSJ,A0A0P0X5E5_ORYSJ Os06g0258200 OsJ_20871 OSNPB_060258200 P0603C10.27,P0673E01.18 Os07g0434300 OSNPB_070434300,Os02g0724400 OsJ_08202 OSNPB_020724400 P0685G12.28,Os06g0258500 OsJ_20873 OSNPB_060258500 P0603C10.31,Os06g0250760 OSJNBa0091G06.33 OSNPB_060250760 P0431E05.9,Os10g0350400 OSNPB_100350400,Os01g0210200 OSNPB_010210200,Os10g0350200 OSNPB_100350200,Os07g0434125 OSNPB_070434125 ENOG411EGDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EGDQ B3H4T3 B3H4T3_ARATH Thioesterase superfamily protein 15332 Thioesterase superfamily protein cytoplasm [GO:0005737]; acyl-CoA hydrolase activity [GO:0047617] locus:4515102668; AT1G52191 Inherit from euNOG: Thioesterase superfamily NA NA NA NA NA NA NA ENOG411EGDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0394200 protein A0A0P0VYC9 A0A0P0VYC9_ORYSJ Os03g0394200 OSNPB_030394200 ENOG411EGDY F18O21_220 Q9LYL7,Q6NLT4 Q9LYL7_ARATH,Q6NLT4_ARATH Uncharacterized protein F18O21_220,At3g56260 19225,21552 Uncharacterized protein F18O21_220,At3g56260 locus:2078496; AT3G56260 NA NA NA NA NA NA NA NA ENOG411EGDZ F4HZV5 F4HZV5_ARATH Uncharacterized protein 19314 Uncharacterized protein locus:5019474629; AT1G29041 NA NA NA NA NA NA NA NA ENOG411EGD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copper type II ascorbate-dependent monooxygenase C-terminal domain NA NA NA NA NA NA NA ENOG411EGD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family NA NA NA NA NA NA NA ENOG411EGD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copper/zinc superoxide dismutase (SODC) NA NA NA NA NA NA NA ENOG411EGD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EGD3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGD8 FD4 Q9FIA7 FER4_ARATH Probable ferredoxin-4, chloroplastic (AtFd4) FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. 16255 Probable ferredoxin-4, chloroplastic (AtFd4) chloroplast [GO:0009507]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; electron transport chain [GO:0022900] TISSUE SPECIFICITY: Expressed in leaves. Not detected in roots. {ECO:0000269|PubMed:14684843}. locus:2178153; AT5G10000 2Fe-2S iron-sulfur cluster binding domain NA NA NA NA NA NA NA ENOG411EGD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0253000 protein (cDNA clone:J013046D10, full insert sequence) Q6YVL6 Q6YVL6_ORYSJ Os07g0253000 Os07g0253000 OsJ_23736 OSNPB_070253000 P0669H03.25 ENOG411EG2S Q9C8R7 Q9C8R7_ARATH Uncharacterized protein T1P2.11 18590 Uncharacterized protein T1P2.11 locus:2198247; AT1G30020 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411EG2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0132400 protein,Os05g0170250 protein Q0JF77,A0A0N7KK81 Q0JF77_ORYSJ,A0A0N7KK81_ORYSJ Os04g0132400 Os04g0132400 OSNPB_040132400,Os05g0170250 OSNPB_050170250 ENOG411E4YT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain Os09g0338200 protein (Speckle-type POZ protein(Spop)-like),Os09g0338000 protein (Speckle-type POZ protein(Spop)-like) Q6ERL7,Q6ERL8 Q6ERL7_ORYSJ,Q6ERL8_ORYSJ OJ1118_A10.18 Os09g0338200 OSNPB_090338200,OJ1118_A10.12 Os09g0338000 OSNPB_090338000 ENOG411E4YU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os04g0585900 protein (Fragment),Os04g0585900 protein Q0JAP2,A0A0P0WE20 Q0JAP2_ORYSJ,A0A0P0WE20_ORYSJ Os04g0585900 Os04g0585900 OSNPB_040585900,Os04g0585900 OSNPB_040585900 ENOG411E4YV ERF106 Q9LY05 EF106_ARATH Ethylene-responsive transcription factor ERF106 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 23146 Ethylene-responsive transcription factor ERF106 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] AT5G07580 transcription factor NA NA NA NA NA NA NA ENOG411E4YW PMEI10 Q9SI74 PMI10_ARATH Pectinesterase inhibitor 10 (Pectin methylesterase inhibitor 10) (AtPMEI10) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have enhanced susceptibility to infection by the necrotrophic pathogen Botrytis cinerea. {ECO:0000269|PubMed:28082716}. FUNCTION: Pectin methylesterase (PME) inhibitor involved in the maintenance of cell wall integrity in response to necrotrophic pathogens. Modulates PME activity and pectin methylesterification during infection by Botrytis cinerea and contributes to resistance against the pathogen. {ECO:0000269|PubMed:28082716}. 32354 Pectinesterase inhibitor 10 (Pectin methylesterase inhibitor 10) (AtPMEI10) apoplast [GO:0048046]; enzyme inhibitor activity [GO:0004857]; pectinesterase inhibitor activity [GO:0046910]; plant-type cell wall organization or biogenesis [GO:0071669] locus:2026227; AT1G62760 PMEI NA NA NA NA NA NA NA ENOG411E4YP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA GATA transcription factor 15 (OsGATA15) (Protein NECK LEAF 1) Q6L5E5 GAT15_ORYSJ GATA15 NL1 Os05g0578900 LOC_Os05g50270 10A19I.2 OJ1126_B10.17 OsJ_19663 OSJNBa0017N18.4 DISRUPTION PHENOTYPE: Reduced plant size. Delayed transition from vegetative to reproductive growth. Reduced panicle size with overgrown bracts at their bases. {ECO:0000269|PubMed:19337211}. FUNCTION: Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}. ENOG411E4YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML31 (Calmodulin-like protein 31),Putative calcium-binding protein CML19 (Calmodulin-like protein 19),Putative calcium-binding protein CML23 (Calmodulin-like protein 23),Os01g0955100 protein (Fragment) Q8RYK0,Q8RYJ8,Q8RYJ9,A0A0P0VD12 CML31_ORYSJ,CML19_ORYSJ,CML23_ORYSJ,A0A0P0VD12_ORYSJ CML31 Os01g0955100 LOC_Os01g72530 B1139B11.15,CML19 Os01g0955500 LOC_Os01g72550 B1139B11.19 OsJ_004700,CML23 Os01g0955400 LOC_Os01g72540 B1139B11.18 OsJ_004699,Os01g0955100 OSNPB_010955100 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E4YR C7A10.940 O23238 O23238_ARATH At4g36420/C7A10_940 (Putative ribosomal protein) (Ribosomal protein) (Ribosomal protein L12 family protein) 19513 At4g36420/C7A10_940 (Putative ribosomal protein) (Ribosomal protein) (Ribosomal protein L12 family protein) integral component of membrane [GO:0016021]; mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543]; mitochondrial transport [GO:0006839] locus:2115385; AT4G36420 ribosomal protein Os03g0734400 protein (Putative ribosomal protein) (Ribosomal protein L7/L12 C-terminal domain containing protein, expressed) (cDNA clone:001-105-C05, full insert sequence) Q6AVT7 Q6AVT7_ORYSJ OSJNBa0027J18.14 LOC_Os03g52400 Os03g0734400 OSNPB_030734400 ENOG411E4YS MBB18.16 Q9FFW0 Q9FFW0_ARATH At5g38610 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At5g38610) 21638 At5g38610 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At5g38610) cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2159833; AT5G38610 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E4YX ABR1,RAP2-6 Q9FGF8,Q7G1L2 ABR1_ARATH,RAP26_ARATH Ethylene-responsive transcription factor ABR1 (Protein ABA REPRESSOR 1),Ethylene-responsive transcription factor RAP2-6 (Protein RELATED TO APETALA2 6) Germination rate hypersensitive to ABA osmotic stress and glucose. Under these conditions the plants are slower growing. Sensitive to ABA, glucose, and osmotic stress-S. Luan-2005 FUNCTION: Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.,FUNCTION: Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Binds to the GCC-box pathogenesis-related promoter element and the cis-element CE1 (coupling element 1). Involved in the regulation of gene expression in response to abiotic stresses, possibly through the abscisic acid (ABA) signaling pathway (PubMed:20193749). Involved in resistance to the beet cyst nematode Heterodera schachtii in roots. May promote callose deposition at syncytia which may interfere with nutrient import into syncytia and inhibit the development of nematodes (PubMed:23510309). {ECO:0000269|PubMed:20193749, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:23510309}. 42814,21963 Ethylene-responsive transcription factor ABR1 (Protein ABA REPRESSOR 1),Ethylene-responsive transcription factor RAP2-6 (Protein RELATED TO APETALA2 6) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; defense response to fungus [GO:0050832]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; response to abscisic acid [GO:0009737]; response to glucose [GO:0009749]; response to osmotic stress [GO:0006970]; response to salt [GO:1902074]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to heat [GO:0034605]; chloroplast organization [GO:0009658]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to jasmonic acid [GO:0009753]; response to osmotic stress [GO:0006970]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}.,TISSUE SPECIFICITY: Expressed in petals, carpels and valves of immature siliques (PubMed:21069430). Expressed at high levels in stems. Expressed in roots, rosette leaves, flowers and siliques (PubMed:20193749, PubMed:23510309). {ECO:0000269|PubMed:20193749, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:23510309}. locus:2176095;,locus:2018635; AT5G64750,AT1G43160 Transcription factor NA NA NA NA NA NA NA ENOG411E4YY LSM8 Q8VYI0,F4IBJ7 LSM8_ARATH,F4IBJ7_ARATH Sm-like protein LSM8 (AtLSM8) (U6 snRNA-associated Sm-like protein LSM8),Small nuclear ribonucleoprotein family protein DISRUPTION PHENOTYPE: Developmental alterations, such as reduced root length, alterations in the shape and number of cotyledons, small rosette leaves with short petioles, early flowering, short siliques with reduced seed number and frequently aborted seeds. {ECO:0000269|PubMed:23221597}. FUNCTION: Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs). LSM8 is essential for the formation of the nuclear LSM2-LSM8 complex involved in the accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-72163; 10706,15760 Sm-like protein LSM8 (AtLSM8) (U6 snRNA-associated Sm-like protein LSM8),Small nuclear ribonucleoprotein family protein precatalytic spliceosome [GO:0071011]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398],cytosol [GO:0005829]; nucleus [GO:0005634]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688]; viral nucleocapsid [GO:0019013]; mRNA splicing, via spliceosome [GO:0000398]; RNA metabolic process [GO:0016070] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2018551; AT1G65700 N-alpha-acetyltransferase 38 NatC auxiliary Os05g0594900 protein Q5TKF9 Q5TKF9_ORYSJ Os05g0594900 Os05g0594900 OSJNBa0030I14.7 OSNPB_050594900 ENOG411E4YZ WRKY24,WRKY56 Q9FFS3,Q8VWQ4 WRK24_ARATH,WRK56_ARATH Probable WRKY transcription factor 24 (WRKY DNA-binding protein 24),Probable WRKY transcription factor 56 (WRKY DNA-binding protein 56) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 20812,21774 Probable WRKY transcription factor 24 (WRKY DNA-binding protein 24),Probable WRKY transcription factor 56 (WRKY DNA-binding protein 56) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2160512;,locus:2024583; AT5G41570,AT1G64000 Transcription factor NA NA NA NA NA NA NA ENOG411E4YD Q9LSW0 Q9LSW0_ARATH Uncharacterized protein At3g25400 (dCTP pyrophosphatase-like protein) ARA:GQT-801-MONOMER; 15820 Uncharacterized protein At3g25400 (dCTP pyrophosphatase-like protein) nucleoside-triphosphate diphosphatase activity [GO:0047429]; nucleoside triphosphate catabolic process [GO:0009143] locus:2094458; AT3G25400 dCTP pyrophosphatase Os04g0346800 protein,Os02g0479300 protein (Fragment) A0A0P0W8Z0,A0A0P0VJ63 A0A0P0W8Z0_ORYSJ,A0A0P0VJ63_ORYSJ Os04g0346800 OSNPB_040346800,Os02g0479300 OSNPB_020479300 ENOG411E4YE MBG8.11 Q9FFU5 Q9FFU5_ARATH At5g54850 (Hexon) 21846 At5g54850 (Hexon) locus:2160135; AT5G54850 NA Os07g0520600 protein (Fragment) A0A0P0X6N5 A0A0P0X6N5_ORYSJ Os07g0520600 OSNPB_070520600 ENOG411E4YF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 NA NA NA NA NA NA NA ENOG411E4YG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E4YA T5P19_10 Q9LY04,Q9FLC9 Q9LY04_ARATH,Q9FLC9_ARATH At3g56360 (Uncharacterized protein At3g56360) (Uncharacterized protein T5P19_10),AT5g05250/K18I23_5 25140,25863 At3g56360 (Uncharacterized protein At3g56360) (Uncharacterized protein T5P19_10),AT5g05250/K18I23_5 plastid [GO:0009536] locus:2102489;,locus:2153509; AT3G56360,AT5G05250 NA Os03g0736900 protein (Fragment) Q0DNS7 Q0DNS7_ORYSJ Os03g0736900 OSNPB_030736900 ENOG411E4YB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Os12g0555100 protein (Pathogenesis-related protein 10, putative, expressed) (cDNA, clone: J100073M08, full insert sequence),Os12g0555500 protein (Pathogenesis-related protein) (Pathogenesis-related protein Bet v I family protein, expressed) (cDNA clone:J023104B18, full insert sequence),Os12g0555200 protein (Pathogenesis-related protein Bet v I family protein, expressed) (cDNA clone:J023064O18, full insert sequence) (cDNA clone:J023064O19, full insert sequence),Os12g0555300 protein (Pathogenesis-related protein 10, putative, expressed),Os12g0555000 protein (Pathogenesis-related protein) (Pathogenesis-related protein 10) (Pathogenesis-related protein 10, putative, expressed) (Root specific pathogenesis-related protein 10) (cDNA clone:001-030-C06, full insert sequence) Q2QNT1,Q2QNS7,Q2QNT0,Q2QNS9,Q75T45 Q2QNT1_ORYSJ,Q2QNS7_ORYSJ,Q2QNT0_ORYSJ,Q2QNS9_ORYSJ,Q75T45_ORYSJ LOC_Os12g36840 Os12g0555100 OSNPB_120555100,LOC_Os12g36880 Os12g0555500 OsJ_36471 OSNPB_120555500,Os12g0555200 LOC_Os12g36850 Os12g0555200 OSNPB_120555200,Os12g0555300 LOC_Os12g36860 OSNPB_120555300,RSOsPR10 LOC_Os12g36830 Os12g0555000 OsJ_36466 OSNPB_120555000 ENOG411E4YC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4YM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Putative glutaredoxin-C2 Q0JG89 GRXC2_ORYSJ GRXC2 Os01g0936000 LOC_Os01g70990 OsJ_04685 P0492G09.32 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E4YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0663900 protein A0A0P0W141 A0A0P0W141_ORYSJ Os03g0663900 OSNPB_030663900 ENOG411E4YH BPC7 O82286 BPC7_ARATH Protein BASIC PENTACYSTEINE7 (AtBPC7) (GAGA-binding transcriptional activator BBR/BPC7) FUNCTION: Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. 24813 Protein BASIC PENTACYSTEINE7 (AtBPC7) (GAGA-binding transcriptional activator BBR/BPC7) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. locus:2062440; AT2G35550 GAGA-binding transcriptional activator NA NA NA NA NA NA NA ENOG411E4YI CIB22 Q945M1 NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (B22 subunit of eukaryotic mitochondrial complex I) (Complex I-B22) (AtCIB22) (CI-B22) (NADH-ubiquinone oxidoreductase B22 subunit) DISRUPTION PHENOTYPE: Shorter roots, smaller plants and delayed flowering. {ECO:0000269|PubMed:21035093}. Knockdown: Short roots; Dwarf; Few, small leaves; Late flowering-L. Qu-2010 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). Is required for correct plant growth and development. {ECO:0000250, ECO:0000269|PubMed:21035093}. 13616 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (B22 subunit of eukaryotic mitochondrial complex I) (Complex I-B22) (AtCIB22) (CI-B22) (NADH-ubiquinone oxidoreductase B22 subunit) mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; vacuolar membrane [GO:0005774]; carbohydrate metabolic process [GO:0005975]; mitochondrial electron transport, NADH to ubiquinone [GO:0006120]; photorespiration [GO:0009853] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, rosette leaves, cauline leaves and siliques, with the highest expression in the stems. {ECO:0000269|PubMed:21035093}. locus:2139619; AT4G34700 NADH dehydrogenase (ubiquinone) 1 beta subcomplex Complex 1 family protein-like (Os06g0714100 protein) Q5Z7T4 Q5Z7T4_ORYSJ Os06g0714100 Os06g0714100 OJ1136_F03.17 OsJ_22647 OSNPB_060714100 ENOG411E4YJ Q0WS40 Q0WS40_ARATH Membrane insertase, putative (DUF1685) (Uncharacterized protein At4g33990) 17026 Membrane insertase, putative (DUF1685) (Uncharacterized protein At4g33990) locus:505006554; AT4G33985 Protein of unknown function (DUF1685) NA NA NA NA NA NA NA ENOG411E4YK Q9MA39,Q8VZ71 Q9MA39_ARATH,Q8VZ71_ARATH At1g05870 (T20M3.14 protein),AT2G31560 protein (At2g31560) (Signal transducer/transcription protein, putative (DUF1685)) (Uncharacterized protein At2g31560) 20806,22165 At1g05870 (T20M3.14 protein),AT2G31560 protein (At2g31560) (Signal transducer/transcription protein, putative (DUF1685)) (Uncharacterized protein At2g31560) locus:2198708;,locus:2065913; AT1G05870,AT2G31560 Protein of unknown function (DUF1685) Os01g0898800 protein,Expressed protein (Os11g0282300 protein),Expressed protein (Os12g0230600 protein) (cDNA clone:J023131I01, full insert sequence),Os11g0245400 protein (Fragment) B9EVD3,Q53NY5,Q2QVG6,A0A0P0Y0K8 B9EVD3_ORYSJ,Q53NY5_ORYSJ,Q2QVG6_ORYSJ,A0A0P0Y0K8_ORYSJ Os01g0898800 OsJ_04419 OSNPB_010898800,Os11g0282300 LOC_Os11g17930 OSNPB_110282300,Os12g0230600 LOC_Os12g12880 Os12g0230600 OSNPB_120230600,Os11g0245400 OSNPB_110245400 ENOG411E4Y4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon NA NA NA NA NA NA NA ENOG411E4Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger C3HC4 type domain containing protein expressed Os08g0157400 protein (cDNA clone:002-139-E12, full insert sequence),Os07g0421800 protein (Fragment) Q6ZD90,A0A0P0X5D8 Q6ZD90_ORYSJ,A0A0P0X5D8_ORYSJ Os08g0157400 OSNPB_080157400 P0438H08.27,Os07g0421800 OSNPB_070421800 ENOG411E4Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANTA (SANT Associated) Os01g0530300 protein (Fragment) Q0JM77 Q0JM77_ORYSJ Os01g0530300 Os01g0530300 OSNPB_010530300 ENOG411E4Y7 Q6ID73 Q6ID73_ARATH At2g26695 (Ran BP2/NZF zinc finger-like superfamily protein) 15295 At2g26695 (Ran BP2/NZF zinc finger-like superfamily protein) metal ion binding [GO:0046872] locus:1006230021; AT2G26695 zinc finger Ran-binding domain-containing protein 2-like NA NA NA NA NA NA NA ENOG411E4Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LisH Os03g0607800 protein (Fragment) Q0DQD2 Q0DQD2_ORYSJ Os03g0607800 Os03g0607800 OSNPB_030607800 ENOG411E4Y1 COPT5 Q93VM8 COPT5_ARATH Copper transporter 5 (AtCOPT5) FUNCTION: Involved in the transport of copper. {ECO:0000269|PubMed:12650623}. 15784 Copper transporter 5 (AtCOPT5) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; copper ion transmembrane transporter activity [GO:0005375]; intracellular copper ion transport [GO:0015680]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Highly expressed in leaves and stems and at lower levels in roots and flowers. {ECO:0000269|PubMed:12650623}. locus:2180474; AT5G20650 copper transporter Copper transporter 5.1 (OsCOPT5.1),Putative copper transporter 5.2 (OsCOPT5.2) Q69P80,Q6Z0Q9 COP51_ORYSJ,COP52_ORYSJ COPT5.1 Os09g0440700 LOC_Os09g26900 OJ1344_B01.31,COPT5.2 Os08g0455900 LOC_Os08g35490 B1144B06.22 FUNCTION: Involved in the transport of copper. {ECO:0000250}. ENOG411E4Y2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heavy metal-associated domain containing protein expressed Os12g0144600 protein,Heavy metal-associated domain containing protein, expressed (Os11g0147500 protein) Q0IQ54,Q2RAL3 Q0IQ54_ORYSJ,Q2RAL3_ORYSJ Os12g0144600 Os12g0144600 OSNPB_120144600,LOC_Os11g05010 Os11g0147500 OsJ_32960 OSNPB_110147500 ENOG411E4Y3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Expressed protein (Os03g0421800 protein) (cDNA clone:J013026N15, full insert sequence) Q6ATM0 Q6ATM0_ORYSJ OSJNBb0021K20.22 LOC_Os03g30830 Os03g0421800 OsJ_11311 OSNPB_030421800 ENOG411E4Y8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0041A02.6 protein (OSJNBa0083N12.22 protein) (Os04g0601600 protein),Os04g0602000 protein,Os04g0601900 protein Q7FAM5,A0A0P0WED2,A0A0P0WEB7 Q7FAM5_ORYSJ,A0A0P0WED2_ORYSJ,A0A0P0WEB7_ORYSJ Os04g0601600 OSJNBa0041A02.6 OSJNBa0083N12.22 OSNPB_040601600,Os04g0602000 OSNPB_040602000,Os04g0601900 OSNPB_040601900 ENOG411E4Y9 Q5Q0I0,Q1G3Y6,F4I9P5 Q5Q0I0_ARATH,Q1G3Y6_ARATH,F4I9P5_ARATH Multidrug resistance protein 14314,12845,6145 Multidrug resistance protein integral component of membrane [GO:0016021] locus:504956276;,locus:4010713560; AT1G09812,AT1G58007 NA Os01g0878000 protein (Fragment) A0A0P0VB48,A0A0P0VB66 A0A0P0VB48_ORYSJ,A0A0P0VB66_ORYSJ Os01g0878000 OSNPB_010878000 ENOG411EA4Z T11I11.160 Q9SW43 Q9SW43_ARATH AT4g34920/F11I11_160 (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein AT4g34920) (Uncharacterized protein T11I11.160) 36400 AT4g34920/F11I11_160 (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein AT4g34920) (Uncharacterized protein T11I11.160) cytosol [GO:0005829]; phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] locus:2116930; AT4G34920 Phosphatidylinositol-specific phospholipase C X domain NA NA NA NA NA NA NA ENOG411EA4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJZ0 Q9FXC7 FB79_ARATH Putative F-box protein At1g67623 34438 Putative F-box protein At1g67623 locus:2824055; AT1G67623 F-box domain NA NA NA NA NA NA NA ENOG411EB8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DREG Q6NKS1 P2C65_ARATH Probable protein phosphatase 2C 65 (AtPP2C65) (EC 3.1.3.16) R-ATH-70895; 3.1.3.16 42004 Probable protein phosphatase 2C 65 (AtPP2C65) (EC 3.1.3.16) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2149775; AT5G01700 phosphatase 2C Probable protein phosphatase 2C 73 (OsPP2C73) (EC 3.1.3.16),Os12g0108600 protein (Fragment) Q2RBJ6,A0A0P0Y6C4 P2C73_ORYSJ,A0A0P0Y6C4_ORYSJ Os11g0109000 LOC_Os11g01790,Os12g0108600 OSNPB_120108600 ENOG411DREF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Acyl transferase 5 (OsAT5) (EC 2.3.1.-) Q0DJH7 AT5_ORYSJ AT5 Os05g0278500 LOC_Os05g19910 OsJ_17890 FUNCTION: Involved in the incorporation of ferulate into the cell wall. May act as arabinoxylan feruloyl transferase. {ECO:0000269|PubMed:23391577}. MISCELLANEOUS: Plants over-expressing AT5 have significant increase of ferulate in leaf cell wall. {ECO:0000269|PubMed:23391577}. ENOG411E2M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0345900 protein,Os01g0347300 protein (Fragment),Os01g0346250 protein B9EWB3,A0A0P0V2S4,A0A0P0V249 B9EWB3_ORYSJ,A0A0P0V2S4_ORYSJ,A0A0P0V249_ORYSJ Os01g0345900 OsJ_01662 OSNPB_010345900,Os01g0347300 OSNPB_010347300,Os01g0346250 OSNPB_010346250 ENOG411E2M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0530500 protein Q6ZI97 Q6ZI97_ORYSJ Os08g0530500 OJ1770_H02.35 OJ1789_C07.14 OsJ_28049 OSNPB_080530500 ENOG411E2M7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0607150 protein A0A0P0WEH6 A0A0P0WEH6_ORYSJ Os04g0607150 OSNPB_040607150 ENOG411E2M9 Q9LIP1,A0A1I9LPJ0 Q9LIP1_ARATH,A0A1I9LPJ0_ARATH Proline-rich receptor-like kinase 39906,38056 Proline-rich receptor-like kinase integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2079256; AT3G26350 Inherit from euNOG: harpin-induced protein 1 domain containing protein NA NA NA NA NA NA NA ENOG411E2MU A8MRD9,A0A1P8ART9,A0A1P8ARR1,B3H4B3 A8MRD9_ARATH,A0A1P8ART9_ARATH,A0A1P8ARR1_ARATH,B3H4B3_ARATH Tudor/PWWP/MBT superfamily protein 87970,74418,93511,87841 Tudor/PWWP/MBT superfamily protein chromatin [GO:0000785]; nucleus [GO:0005634]; DNA repair [GO:0006281]; mitotic sister chromatid cohesion [GO:0007064] locus:2025712; AT1G80810 Inherit from KOG: PDS5 regulator of cohesion maintenance homolog NA NA NA NA NA NA NA ENOG411E2MA O80675 O80675_ARATH At2g41120 (DUF309 domain protein) (Uncharacterized protein At2g41120) 29532 At2g41120 (DUF309 domain protein) (Uncharacterized protein At2g41120) locus:2063213; AT2G41120 Domain of unknown function (DUF309) Expressed protein (Os11g0130200 protein) (cDNA clone:001-028-C06, full insert sequence),Os09g0421400 protein,Os12g0126900 protein Q2RB12,A0A0N7KQT7,A0A0P0Y6Q0 Q2RB12_ORYSJ,A0A0N7KQT7_ORYSJ,A0A0P0Y6Q0_ORYSJ Os11g0130200 LOC_Os11g03580 Os11g0130200 OsJ_32810 OSNPB_110130200,Os09g0421400 OSNPB_090421400,Os12g0126900 OSNPB_120126900 ENOG411E2MK F4HTY0 F4HTY0_ARATH SNARE-like superfamily protein R-ATH-204005;R-ATH-8876198; 15265 SNARE-like superfamily protein cytoplasm [GO:0005737]; ER to Golgi vesicle-mediated transport [GO:0006888] locus:2198983; AT1G80500 Trafficking protein particle complex subunit Os02g0613600 protein (Putative spondyloepiphyseal dysplasia) (cDNA clone:J023084J18, full insert sequence),Os04g0503800 protein (Fragment) Q6K5Z3,Q0JBY0 Q6K5Z3_ORYSJ,Q0JBY0_ORYSJ Os02g0613600 Os02g0613600 OJ2055_H10.6 OsJ_07512 OSNPB_020613600,Os04g0503800 Os04g0503800 OSNPB_040503800 ENOG411E2MI Q94JM4,A0A1P8B3B0 Q94JM4_ARATH,A0A1P8B3B0_ARATH AT4g19390/T5K18_170 (Uncharacterized protein family (UPF0114)),Uncharacterized protein family (UPF0114) 30043,20746 AT4g19390/T5K18_170 (Uncharacterized protein family (UPF0114)),Uncharacterized protein family (UPF0114) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2140411; AT4G19390 Uncharacterized protein family UPF0114 Os06g0710300 protein (cDNA clone:J023121B11, full insert sequence) Q5Z9G6 Q5Z9G6_ORYSJ Os06g0710300 OSNPB_060710300 P0655A07.23 ENOG411DSDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF Os09g0471800 protein (Putative wall-associated serine/threonine kinase),Os09g0471600 protein,Os09g0471550 protein,Os09g0471400 protein (Fragment),Os09g0471200 protein,Os09g0471500 protein,Os09g0373800 protein (Fragment),Os06g0706600 protein (Fragment) Q6K4D6,A0A0P0XNG3,A0A0N7KQZ1,A0A0P0XPJ9,A0A0P0XPL0,A0A0P0XP33,A0A0P0XM28,A0A0P0X115 Q6K4D6_ORYSJ,A0A0P0XNG3_ORYSJ,A0A0N7KQZ1_ORYSJ,A0A0P0XPJ9_ORYSJ,A0A0P0XPL0_ORYSJ,A0A0P0XP33_ORYSJ,A0A0P0XM28_ORYSJ,A0A0P0X115_ORYSJ Os09g0471800 OJ1118_B06.25 OJ1509_C06.1 OSNPB_090471800,Os09g0471600 OSNPB_090471600,Os09g0471550 OSNPB_090471550,Os09g0471400 OSNPB_090471400,Os09g0471200 OSNPB_090471200,Os09g0471500 OSNPB_090471500,Os09g0373800 OSNPB_090373800,Os06g0706600 OSNPB_060706600 ENOG411DSDV Q9FZ97 Q9FZ97_ARATH F3H9.11 protein (Strawberry notch protein (DUF616)) 65578 F3H9.11 protein (Strawberry notch protein (DUF616)) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2032137; AT1G28240 Protein of unknown function (DUF616) Os05g0531500 protein,Os01g0304300 protein (cDNA, clone: J075118M20, full insert sequence),Os05g0531500 protein (Fragment) B9FLA1,B7F980,A0A0P0WQC7 B9FLA1_ORYSJ,B7F980_ORYSJ,A0A0P0WQC7_ORYSJ Os05g0531500 OsJ_19313 OSNPB_050531500,Os01g0304300 OSNPB_010304300,Os05g0531500 OSNPB_050531500 ENOG411DSDT PMM O80840 PMM_ARATH Phosphomannomutase (AtPMM) (EC 5.4.2.8) DISRUPTION PHENOTYPE: The thermosensitive lethality of pmm-12 results from glycosylation defects rather than ascorbic acid depletion. {ECO:0000269|PubMed:18086684}. pmm-12 plants are phenotypically similar to wild type seedlings when grown at 16–18 °C but die within several days after transfer to 28 °C. This phenotype is observed throughout both vegetative and reproductive development. Protein extracts derived from pmm-12 plants have lower protein and enzyme activity levels and at restrictive temperature glycosylation is perturbed. Lethal at high temperature-M. Vuylsteke-2008 FUNCTION: Involved in ascorbic acid biosynthesis and in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. {ECO:0000269|PubMed:17217471, ECO:0000269|PubMed:18086684}. PATHWAY: Nucleotide-sugar biosynthesis; GDP-alpha-D-mannose biosynthesis; alpha-D-mannose 1-phosphate from D-fructose 6-phosphate: step 2/2. MetaCyc:AT2G45790-MONOMER; R-ATH-446205; 5.4.2.8; Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 5.4.2.8 27762 Phosphomannomutase (AtPMM) (EC 5.4.2.8) cytosol [GO:0005829]; phosphomannomutase activity [GO:0004615]; GDP-mannose biosynthetic process [GO:0009298]; L-ascorbic acid biosynthetic process [GO:0019853]; mannose metabolic process [GO:0006013]; protein N-linked glycosylation [GO:0006487]; protein targeting to ER [GO:0045047]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flower buds, flowers and immature fruits. {ECO:0000269|PubMed:17217471}. locus:2050751; AT2G45790 phosphomannomutase Phosphomannomutase (OsPMM) (EC 5.4.2.8),Phosphomannomutase (EC 5.4.2.8) Q7XPW5,A0A0N7KJY2 PMM_ORYSJ,A0A0N7KJY2_ORYSJ PMM Os04g0682300 LOC_Os04g58580 OsJ_015937 OSJNBa0032F06.16,Os04g0682300 OSNPB_040682300 FUNCTION: Involved in ascorbic acid biosynthesis and in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. {ECO:0000250}.,FUNCTION: Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. {ECO:0000256|RuleBase:RU361118}. ENOG411DSDS E2FB,E2FA,E2F3 Q9FV71,Q9FNY0,F4ILT1 E2FB_ARATH,E2FA_ARATH,F4ILT1_ARATH Transcription factor E2FB (E2F transcription factor-1) (AtE2F1),Transcription factor E2FA (E2F transcription factor-3) (AtE2F3),E2F transcription factor 3 FUNCTION: Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}.,FUNCTION: Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. R-ATH-1538133;R-ATH-68689;R-ATH-68911;R-ATH-69298; 51653,52839,56422 Transcription factor E2FB (E2F transcription factor-1) (AtE2F1),Transcription factor E2FA (E2F transcription factor-3) (AtE2F3),E2F transcription factor 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell cycle [GO:0007049]; positive regulation of cell proliferation [GO:0008284]; positive regulation of meiotic cell cycle [GO:0051446]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cell division [GO:0051302]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351]; trichome morphogenesis [GO:0010090],cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell cycle [GO:0007049]; positive regulation of meiotic cell cycle [GO:0051446]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant at the G1/S transition. Lower but constant level in the following phases. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:16514015}.,DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. TISSUE SPECIFICITY: Expressed in proliferating cells and several differentiated tissues. Detected in inflorescence and shoot apical meristems, cotyledonary vascular tissues, leaf primordia, young leaves, base of trichomes, central cylinder and elongation zone of roots, lateral root primordia, flowers, pistils of immature flowers and pollen grains. {ECO:0000269|PubMed:16514015}.,TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. locus:3685148;,locus:2039220; AT5G22220,AT2G36010 transcription factor E2F-DP transcription factor (Os02g0537500 protein) (Putative E2F homolog) (cDNA clone:J013161I16, full insert sequence),Os12g0158800 protein (Transcription factor E2F/dimerisation partner family protein, expressed),Os04g0416100 protein (cDNA clone:J013113N12, full insert sequence) Q5QL93,Q2QXF8,Q0JDB0 Q5QL93_ORYSJ,Q2QXF8_ORYSJ,Q0JDB0_ORYSJ P0508B05.21-2 Os02g0537500 OSNPB_020537500,LOC_Os12g06200 Os12g0158800 OSNPB_120158800,Os04g0416100 Os04g0416100 OSNPB_040416100 ENOG411DSDR Q8H132,A0A1P8B3Y5,F4KD53 Q8H132_ARATH,A0A1P8B3Y5_ARATH,F4KD53_ARATH Major facilitator superfamily protein (Uncharacterized protein At4g19450),Major facilitator superfamily protein 62598,45651,62538 Major facilitator superfamily protein (Uncharacterized protein At4g19450),Major facilitator superfamily protein integral component of membrane [GO:0016021] locus:2140386;,locus:1006230550; AT4G19450,AT5G45275 Nodulin-like Major Facilitator Superfamily protein, expressed (Os11g0107400 protein),Nodulin-like family protein, expressed (Os12g0106500 protein) Q2RBL6,Q2QYU1 Q2RBL6_ORYSJ,Q2QYU1_ORYSJ Os11g0107400 LOC_Os11g01590 Os11g0107400 OSNPB_110107400,Os12g0106500 LOC_Os12g01570 OSNPB_120106500 ENOG411DSDQ MNJ8.130,MQJ16.2 A4VCM4,A0A1P8BED3,F4K9W6,F4K746 A4VCM4_ARATH,A0A1P8BED3_ARATH,F4K9W6_ARATH,F4K746_ARATH At5g37340 (ZPR1 zinc-finger domain protein),ZPR1 zinc-finger domain protein 54033,50554,54077,54445 At5g37340 (ZPR1 zinc-finger domain protein),ZPR1 zinc-finger domain protein zinc ion binding [GO:0008270],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; zinc ion binding [GO:0008270],cytoplasm [GO:0005737]; nucleus [GO:0005634]; zinc ion binding [GO:0008270] locus:2171142;,locus:2169130; AT5G37340,AT5G22480 zinc finger Os08g0471900 protein (Putative zinc-finger protein) (Zinc finger protein) (cDNA clone:J023022E19, full insert sequence) Q6Z9R0 Q6Z9R0_ORYSJ Os08g0471900 OsJ_27641 OSNPB_080471900 P0013B04.4 P0461F06.39 ENOG411DSDP 4CL3 Q9S777,F4I9T8 4CL3_ARATH,F4I9T8_ARATH 4-coumarate--CoA ligase 3 (4CL 3) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 3) (At4CL3) (4-coumaroyl-CoA synthase 3),4-coumarate:CoA ligase 3 FUNCTION: Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics. PATHWAY: Phytoalexin biosynthesis; 3,4',5-trihydroxystilbene biosynthesis; 3,4',5-trihydroxystilbene from trans-4-coumarate: step 1/2. ARA:AT1G65060-MONOMER;MetaCyc:AT1G65060-MONOMER; 6.2.1.12 61311,54299 4-coumarate--CoA ligase 3 (4CL 3) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 3) (At4CL3) (4-coumaroyl-CoA synthase 3),4-coumarate:CoA ligase 3 4-coumarate-CoA ligase activity [GO:0016207]; ATP binding [GO:0005524]; phenylpropanoid metabolic process [GO:0009698]; pollen exine formation [GO:0010584],integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Preferentially expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:10417722}. locus:2015003; AT1G65060 4-coumarate--CoA ligase Probable 4-coumarate--CoA ligase 2 (4CL 2) (Os4CL2) (EC 6.2.1.12) (4-coumaroyl-CoA synthase 2) Q42982 4CL2_ORYSJ 4CL2 4CL.2 Os02g0697400 LOC_Os02g46970 P0459B01.4-1 P0666E12.12-1 ENOG411DSDZ TIC20-V Q9FM67 TI205_ARATH Protein TIC 20-v, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-V) (AtTIC20-v) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21395885}. FUNCTION: May be involved in protein precursor import into chloroplasts. Not redundant with TIC20-I, TIC20-II or TIC20-IV. 23652 Protein TIC 20-v, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-V) (AtTIC20-v) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; protein transport [GO:0015031] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21395885}. TISSUE SPECIFICITY: Expressed in leaves, siliques and roots. {ECO:0000269|PubMed:21395885}. locus:2162167; AT5G55710 Inherit from NOG: protein transport Os02g0726600 protein (Fragment) Q0DXY2 Q0DXY2_ORYSJ Os02g0726600 Os02g0726600 OSNPB_020726600 ENOG411DSDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copine Copine I-like (Os08g0494300 protein) Q6Z5F6 Q6Z5F6_ORYSJ Os08g0494300 Os08g0494300 B1142B04.3 OsJ_27782 OSNPB_080494300 P0686H11.35 ENOG411DSDX PHR2 Q8LB72 PHR2_ARATH Blue-light photoreceptor PHR2 48878 Blue-light photoreceptor PHR2 photoreceptor activity [GO:0009881]; protein-chromophore linkage [GO:0018298] locus:2061961; AT2G47590 Blue-light photoreceptor Os03g0343400 protein (Photolyase/blue-light receptor PHR2, putative, expressed) Q10LM1 Q10LM1_ORYSJ Os03g0343400 LOC_Os03g22330 Os03g0343400 OsJ_10801 OSNPB_030343400 ENOG411DSDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411DSDF PRXQ Q9LU86,F4JBC9,A0A1I9LR27 PRXQ_ARATH,F4JBC9_ARATH,A0A1I9LR27_ARATH Peroxiredoxin Q, chloroplastic (EC 1.11.1.15) (Thioredoxin peroxidase),Thioredoxin superfamily protein FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. Involved in the photosystem II protection against hydrogen peroxide. {ECO:0000269|PubMed:12084836, ECO:0000269|PubMed:16507087, ECO:0000269|PubMed:21798375}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this atypical 2-Cys peroxiredoxin, C(R) is present in the same subunit to form an intramolecular disulfide. The disulfide is subsequently reduced by thioredoxin. {ECO:0000250|UniProtKB:P0AE52}. ARA:AT3G26060-MONOMER; 1.11.1.15 23678,23806,17028 Peroxiredoxin Q, chloroplastic (EC 1.11.1.15) (Thioredoxin peroxidase),Thioredoxin superfamily protein chloroplast thylakoid lumen [GO:0009543]; plastoglobule [GO:0010287]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; plastoglobule [GO:0010287]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454],cell [GO:0005623]; antioxidant activity [GO:0016209]; oxidoreductase activity [GO:0016491]; cell redox homeostasis [GO:0045454] TISSUE SPECIFICITY: Expressed in all tissues at the exception of roots. {ECO:0000269|PubMed:16507087, ECO:0000269|Ref.6}. locus:2092135; AT3G26060 Peroxiredoxin Peroxiredoxin Q, chloroplastic (EC 1.11.1.15) (Thioredoxin peroxidase) P0C5D5 PRXQ_ORYSJ Os06g0196300 LOC_Os06g09610 OsJ_019618 P0528E04.23 FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. {ECO:0000250|UniProtKB:Q9LU86}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this atypical 2-Cys peroxiredoxin, C(R) is present in the same subunit to form an intramolecular disulfide. The disulfide is subsequently reduced by thioredoxin. {ECO:0000250|UniProtKB:P0AE52}. ENOG411DSDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os09g0501600 protein (cDNA clone:001-021-C10, full insert sequence) Q0J0S0 Q0J0S0_ORYSJ Os09g0501600 Os09g0501600 OsJ_29905 OSNPB_090501600 ENOG411DSDD PAL1,PAL2 P35510,P45724 PAL1_ARATH,PAL2_ARATH Phenylalanine ammonia-lyase 1 (EC 4.3.1.24),Phenylalanine ammonia-lyase 2 (EC 4.3.1.24) FUNCTION: This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton. PATHWAY: Phenylpropanoid metabolism; trans-cinnamate biosynthesis; trans-cinnamate from L-phenylalanine: step 1/1. R-ATH-70921; 4.3.1.24; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 4.3.1.24 78726,77860 Phenylalanine ammonia-lyase 1 (EC 4.3.1.24),Phenylalanine ammonia-lyase 2 (EC 4.3.1.24) cytoplasm [GO:0005737]; phenylalanine ammonia-lyase activity [GO:0045548]; cinnamic acid biosynthetic process [GO:0009800]; drought recovery [GO:0009819]; L-phenylalanine catabolic process [GO:0006559]; lignin catabolic process [GO:0046274]; pollen development [GO:0009555]; response to karrikin [GO:0080167]; response to oxidative stress [GO:0006979]; response to UV-B [GO:0010224]; salicylic acid catabolic process [GO:0046244],cytosol [GO:0005829]; phenylalanine ammonia-lyase activity [GO:0045548]; cinnamic acid biosynthetic process [GO:0009800]; L-phenylalanine catabolic process [GO:0006559]; phenylpropanoid biosynthetic process [GO:0009699]; response to karrikin [GO:0080167]; response to oxidative stress [GO:0006979] locus:2057981;,locus:2101958; AT2G37040,AT3G53260 Phenylalanine ammonialyase Phenylalanine ammonia-lyase (EC 4.3.1.24),Os02g0626400 protein (Fragment),Os08g0308300 protein (Fragment),Os12g0461300 protein (Fragment),Phenylalanine ammonia-lyase (EC 4.3.1.24) (Fragment) Q0DZE0,Q6K6Q1,Q7X8V3,Q75HQ7,A0A0N7KFQ4,A0A0P0VLY5,A0A0P0XE65,A0A0P0Y9W1,A0A0P0VM80 PAL2_ORYSJ,Q6K6Q1_ORYSJ,Q7X8V3_ORYSJ,Q75HQ7_ORYSJ,A0A0N7KFQ4_ORYSJ,A0A0P0VLY5_ORYSJ,A0A0P0XE65_ORYSJ,A0A0P0Y9W1_ORYSJ,A0A0P0VM80_ORYSJ ZB8 Os02g0627100 LOC_Os02g41680 OsJ_007359 P0042D01.10,Os02g0626400 Os02g0626400 OsJ_07593 OSNPB_020626400 P0042D01.4,Os04g0518400 OsJ_19054 OSJNBa0073E02.18 OSJNBb0061C13.5 OSNPB_040518400,Os05g0427400 Os05g0427400 OsJ_18619 OSJNBa0044P19.16 OSNPB_050427400 P0636F09.10,Os02g0626400 OSNPB_020626400,Os08g0308300 OSNPB_080308300,Os12g0461300 OSNPB_120461300,Os02g0626600 OSNPB_020626600 FUNCTION: This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton. ENOG411DSDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411DSDB PEX2,TED3 Q9CA86,F4HQB1 PEX2_ARATH,F4HQB1_ARATH Peroxisome biogenesis protein 2 (E3 ubiquitin-protein ligase PEX2) (Peroxin-2) (AtPEX2) (AthPEX2) (Pex2p),Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein DISRUPTION PHENOTYPE: Embryo lethality at the heart stage. {ECO:0000269|PubMed:12130786}. Embryo defective; Transition-J. Hu-2007 FUNCTION: Might act directly in a photomorphogenetic pathway negatively regulated by DET1, which is involved in peroxisome assembly and matrix protein import. Could be part of a complex responsible for the monoubiquitination of PEX5. Acts as an E3 ubiquitin-protein ligase. {ECO:0000269|PubMed:12130786, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:20679226, ECO:0000269|PubMed:23336935}. MISCELLANEOUS: Travels directly from the cytosol to the peroxisomes. R-ATH-8866654; 38174,32464 Peroxisome biogenesis protein 2 (E3 ubiquitin-protein ligase PEX2) (Peroxin-2) (AtPEX2) (AthPEX2) (Pex2p),Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein cytosol [GO:0005829]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; fatty acid beta-oxidation [GO:0006635]; peroxisome organization [GO:0007031]; photomorphogenesis [GO:0009640]; protein import into peroxisome matrix [GO:0016558]; protein monoubiquitination [GO:0006513],metal ion binding [GO:0046872] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:12130786}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, pollen, ovules, seeds and siliques. {ECO:0000269|PubMed:12130786}. locus:2017804; AT1G79810 peroxisome biogenesis protein 2-like Os05g0275700 protein (Putative peroxisome assembly protein 2) (cDNA clone:J013121E16, full insert sequence) Q6ATD1 Q6ATD1_ORYSJ Os05g0275700 Os05g0275700 OsJ_17880 OSJNBa0018H09.15 OSNPB_050275700 ENOG411DSDM LHCB7 Q9C9K1 CB7_ARATH Chlorophyll a-b binding protein 7, chloroplastic (Light-harvesting chlorophyll B-binding protein 7) (AtLHCB7) (Lhcb7) FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (Probable). Probably functions in non-photochemical quenching (NPQ) to dissipate energy under conditions where the absorbed light exceeds the electron transfer capacities of the thylakoid complexes contributing to primary photochemistry (PubMed:24119415). {ECO:0000269|PubMed:24119415, ECO:0000305}. 36375 Chlorophyll a-b binding protein 7, chloroplastic (Light-harvesting chlorophyll B-binding protein 7) (AtLHCB7) (Lhcb7) chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; chlorophyll binding [GO:0016168]; pigment binding [GO:0031409]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to far red light [GO:0010218] TISSUE SPECIFICITY: Expressed in a punctuate pattern in cotyledons and leaves. Expressed in flowers, mature siliques and mature embryos. {ECO:0000269|PubMed:18820083}. locus:2011691; AT1G76570 Chlorophyll a-b binding protein Chlorophyll a-b binding protein, chloroplastic Q69TB3 Q69TB3_ORYSJ Os09g0296800 Os09g0296800 OSNPB_090296800 P0592C05.21 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DSDK CYCA3-2,CYCA3-4,CYCA3-1,CYCA3-3,CYCA3;2,CYCA3:1 Q9C6A9,Q3ECW2,Q9FMH5,A0MEB5,Q9ZU36,F4HT55,A0A1P8BF48 CCA32_ARATH,CCA34_ARATH,CCA31_ARATH,CCA33_ARATH,Q9ZU36_ARATH,F4HT55_ARATH,A0A1P8BF48_ARATH Cyclin-A3-2 (G2/mitotic-specific cyclin-A3-2) (CycA3;2),Cyclin-A3-4 (G2/mitotic-specific cyclin-A3-4) (CycA3;4),Putative cyclin-A3-1 (G2/mitotic-specific cyclin-A3-1) (CycA3;1),Cyclin-A3-3 (G2/mitotic-specific cyclin-A3-3) (CycA3;3),At2g01310 (Uncharacterized protein At2g01310),Cyclin-dependent protein kinase 32,Cyclin A31 R-ATH-1538133;R-ATH-174184;R-ATH-5689880;R-ATH-5693607;R-ATH-68911;R-ATH-68949;R-ATH-69273;R-ATH-69656; 42461,42317,40956,38130,6045,21559,40359 Cyclin-A3-2 (G2/mitotic-specific cyclin-A3-2) (CycA3;2),Cyclin-A3-4 (G2/mitotic-specific cyclin-A3-4) (CycA3;4),Putative cyclin-A3-1 (G2/mitotic-specific cyclin-A3-1) (CycA3;1),Cyclin-A3-3 (G2/mitotic-specific cyclin-A3-3) (CycA3;3),At2g01310 (Uncharacterized protein At2g01310),Cyclin-dependent protein kinase 32,Cyclin A31 cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301],nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301],kinase activity [GO:0016301],nucleus [GO:0005634] DEVELOPMENTAL STAGE: Expressed in the G1/S phases. {ECO:0000269|PubMed:16517759}.,DEVELOPMENTAL STAGE: Highly expressed in the S and G2 phases and reduceed levels in the M phase. {ECO:0000269|PubMed:15970679}. locus:2030648;,locus:2036756;,locus:2167761;,locus:2036761;,locus:2038721; AT1G47210,AT1G47230,AT5G43080,AT1G47220,AT2G01310 Cyclin A Cyclin-A3-2 (G2/mitotic-specific cyclin-A3-2) (CycA3;2),Cyclin-A3-1 (G2/mitotic-specific cyclin-A3-1) (CycA3;1),Os03g0607600 protein (Fragment) Q2QN26,Q75I54,A0A0P0W051 CCA32_ORYSJ,CCA31_ORYSJ,A0A0P0W051_ORYSJ CYCA3-2 Os12g0581800 LOC_Os12g39210 OsJ_035222,CYCA3-1 Os03g0607600 LOC_Os03g41100 OSJNBa0091E13.3,Os03g0607600 OSNPB_030607600 ENOG411DSDJ A0A1P8B6C8 A0A1P8B6C8_ARATH Tubulin-tyrosine ligase 19555 Tubulin-tyrosine ligase ligase activity [GO:0016874] NA Os08g0512100 protein Q6Z8P1 Q6Z8P1_ORYSJ P0711H09.7 Os08g0512100 OSNPB_080512100 ENOG411DSDI RMF,T12C14_200 Q9FGB8,Q9M365,Q9LZP0,A0A1I9LQ20 FB332_ARATH,FB331_ARATH,Q9LZP0_ARATH,A0A1I9LQ20_ARATH Probable F-box protein At5g36000,Probable F-box protein At3g61730 (Protein RFM) (Reduced male fertility protein),F-box protein RMF (Uncharacterized protein T12C14_200),F-box protein RMF Reduced growth small dark green leaves. Small flowers with poorly developed stamens and short filaments. Male sterile. Increased growth rate; Large leaves and flowers-C. Park-2010 FUNCTION: Regulates tapetum degeneration and pollen maturation during anther development. {ECO:0000269|PubMed:20458496}. 39739,40452,42376,45034 Probable F-box protein At5g36000,Probable F-box protein At3g61730 (Protein RFM) (Reduced male fertility protein),F-box protein RMF (Uncharacterized protein T12C14_200),F-box protein RMF nucleus [GO:0005634],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Expressed to a high level in young floral buds, but decreases in the later floral developmental stages. Expression restricted to microspores and pollen grains at the later developmental stages of anther. {ECO:0000269|PubMed:20458496}. TISSUE SPECIFICITY: Expressed in flower buds, developing anthers, pollen grains, siliques, rosette leaves and roots. Detected at lower levels in open flowers, stems and cauline leaves. Expressed in young seedling in the hydathodes, shoot apical meristem, root tips and lateral root primordia. {ECO:0000269|PubMed:20458496}. locus:2162883;,locus:2096014; AT5G36000,AT3G61730,AT3G62500 F-Box protein Os01g0219200 protein (cDNA clone:002-145-H02, full insert sequence) Q0JPJ6 Q0JPJ6_ORYSJ Os01g0219200 Os01g0219200 OSNPB_010219200 ENOG411DSDH FTSH1,FTSH5 Q39102,Q9FH02 FTSH1_ARATH,FTSH5_ARATH ATP-dependent zinc metalloprotease FTSH 1, chloroplastic (AtFTSH1) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 5, chloroplastic (AtFTSH5) (EC 3.4.24.-) (Protein VARIEGATED 1) DISRUPTION PHENOTYPE: No visible changes in phenotype, probably due to a complementation by FTSH5. The presence of both FTSH1 or FTSH5 (subunit type A) and FTSH2 or FTSH8 (subunit type B) is essential for an active complex formation. {ECO:0000269|PubMed:14630971}.,DISRUPTION PHENOTYPE: Leaf-variegated. Mutations can be complemented by overexpression of FTSH1. The presence of both FTSH1 or FTSH5 (subunit type A) and FTSH2 or FTSH8 (subunit type B) is essential for an active complex formation. {ECO:0000269|PubMed:12167156}. no visible difference in leaf morphology and variegation when grown under normal light and temperature conditions compared to wild-type.,More variegated than ftsh2.,Completely white seedlings. Restoration of Heterozygocity of FTSH5 allows chloroplast development in the cotyledons.,Lesser ability to deal with photoinhibition.,variegated. Variegated-M. Murata-2002 FUNCTION: Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions. {ECO:0000269|PubMed:10715327}.,FUNCTION: Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions. Not involved in the degradation of the light-harvesting complex of photosystem II (LHC II) or in thermotolerance. {ECO:0000269|PubMed:12167156, ECO:0000269|PubMed:14630971, ECO:0000269|PubMed:16157880, ECO:0000269|PubMed:16972866}. 3.4.24.B20; 3.4.24.- 76759,75232 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic (AtFTSH1) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 5, chloroplastic (AtFTSH5) (EC 3.4.24.-) (Protein VARIEGATED 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; thylakoid lumen [GO:0031977]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; multicellular organism development [GO:0007275]; photoinhibition [GO:0010205]; photosystem II repair [GO:0010206]; proteolysis [GO:0006508]; PSII associated light-harvesting complex II catabolic process [GO:0010304],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; ATPase activity [GO:0016887]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; multicellular organism development [GO:0007275]; photoinhibition [GO:0010205]; photosystem I assembly [GO:0048564]; photosystem II repair [GO:0010206]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; PSII associated light-harvesting complex II catabolic process [GO:0010304]; response to cytokinin [GO:0009735] DEVELOPMENTAL STAGE: Low expression in cotyledons, increasing with leaves development. {ECO:0000269|PubMed:15918877}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16040665}. locus:2011952;,locus:2157637; AT1G50250,AT5G42270 ATP-dependent zinc metalloprotease FTSH ATP-dependent zinc metalloprotease FTSH 1, chloroplastic (OsFTSH1) (EC 3.4.24.-),Os06g0725900 protein (Fragment) Q5Z974,A0A0N7KMS0 FTSH1_ORYSJ,A0A0N7KMS0_ORYSJ FTSH1 Os06g0725900 LOC_Os06g51029 OsJ_021819 P0548E04.20,Os06g0725900 OSNPB_060725900 FUNCTION: Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. ENOG411DSD7 PCMP-E1 Q9FGR2 PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600 59955 Pentatricopeptide repeat-containing protein At5g59600 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2148393; AT5G59600 Pentatricopeptide repeat-containing protein Os03g0271300 protein (Pentatricopeptide, putative, expressed) Q10NF1 Q10NF1_ORYSJ Os03g0271300 LOC_Os03g16450 OSNPB_030271300 ENOG411DSD6 S-ACP-DES6 Q84VY3 STAD6_ARATH Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic (Stearoyl-ACP desaturase 6) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 6) FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. {ECO:0000250|UniProtKB:P22337}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT1G43800-MONOMER; 1.14.19.2; 1.14.19.2 44156 Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic (Stearoyl-ACP desaturase 6) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 6) chloroplast [GO:0009507]; membrane [GO:0016020]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-[acp] desaturase activity [GO:0102786]; fatty acid biosynthetic process [GO:0006633] locus:2029142; AT1G43800 Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain (By similarity) Stearoyl-[acyl-carrier-protein] 9-desaturase 1, chloroplastic (Stearoyl-ACP desaturase 1) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 1) Q8LJJ9 STAD1_ORYSJ Os01g0880800 LOC_Os01g65830 P0018C10.55 FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. {ECO:0000250|UniProtKB:P22337}. ENOG411DSD5 IPT2 Q9ZUX7 IPT2_ARATH tRNA dimethylallyltransferase 2 (EC 2.5.1.75) (Isopentenyl-diphosphate: tRNA isopentenyltransferase 2) (AtIPT2) (IPP transferase 2) (IPPT 2) DISRUPTION PHENOTYPE: No visible phenotype, due the redundancy with IPT9. {ECO:0000269|PubMed:17062755}. Levels of cZ are reduced in this mutant compared to those of wild type.,Levels of cZR and cZRMP are reduced in this mutant compared to those of wild type.,Levels of iP-type and tZ-type cytokinins are unaffected in this mutant.,No visible phenotype.,The levels of cZR contained in tRNA are decreased to ~30% of those found in wild type; in contrast the levels of iPR in tRNA remain unchanged.,This mutant can be chlorotic.,cZR and cZRMP are almost undetectable in this mutant. FUNCTION: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis. {ECO:0000269|PubMed:11999372, ECO:0000269|PubMed:17062755}. MISCELLANEOUS: Contains 2 inserted regions when compared with other members of the Arabidopsis IPT family. No adenylate isopentenyltransferase activity detected neither in cv. Columbia, nor in cv. Wassilewskija. ARA:AT2G27760-MONOMER;MetaCyc:AT2G27760-MONOMER; 2.5.1.75; 2.5.1.75 53098 tRNA dimethylallyltransferase 2 (EC 2.5.1.75) (Isopentenyl-diphosphate: tRNA isopentenyltransferase 2) (AtIPT2) (IPP transferase 2) (IPPT 2) cytosol [GO:0005829]; mitochondrion [GO:0005739]; AMP dimethylallyltransferase activity [GO:0009824]; ATP binding [GO:0005524]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400] TISSUE SPECIFICITY: Expressed ubiquitously, with highest expression in proliferating tissues. {ECO:0000269|PubMed:14675438}. locus:2042103; AT2G27760 tRNA dimethylallyltransferase tRNA dimethylallyltransferase (EC 2.5.1.75),Os01g0968700 protein (Fragment) Q5JLF1,A0A0P0VDC7 Q5JLF1_ORYSJ,A0A0P0VDC7_ORYSJ OJ1656_A11.16-1 Os01g0968700 OsJ_04908 OSNPB_010968700,Os01g0968700 OSNPB_010968700 FUNCTION: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37. {ECO:0000256|PIRNR:PIRNR039110}. ENOG411DSD4 RABA4C,RABA4D Q9FE79,Q9LH50 RAA4C_ARATH,RAA4D_ARATH Ras-related protein RABA4c (AtRABA4c) (Ras-related protein SMG1),Ras-related protein RABA4d (AtRABA4d) DISRUPTION PHENOTYPE: Defects in pollen tube growth and altered deposition of cell wall components. {ECO:0000269|PubMed:19208902}. in vitro: bulged pollen tubes of mutant pollen with a reduced rate of growth in vitro; altered deposition of some cell wall components; in vivo male-specific transmission defect with mutant pollen tubes displaying aberrant growth in the ovary and reduced guidance at the micropyle. Altered pollen tube growth and morphology; Homozygotes are viable: 100% abnormal pollen-E. Nielsen-2009 FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}.,FUNCTION: Intracellular vesicle trafficking and protein transport. Plays an important role in the regulation of pollen tube tip growth. {ECO:0000269|PubMed:19208902}. Endocytosis (04144),Pancreatic secretion (04972),Vasopressin-regulated water reabsorption (04962),Endocrine and other factor-regulated calcium reabsorption (04961) 24839,24720 Ras-related protein RABA4c (AtRABA4c) (Ras-related protein SMG1),Ras-related protein RABA4d (AtRABA4d) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],apical part of cell [GO:0045177]; cytoplasmic vesicle membrane [GO:0030659]; endosome [GO:0005768]; exocytic vesicle [GO:0070382]; Golgi apparatus [GO:0005794]; pollen tube tip [GO:0090404]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; kinase binding [GO:0019900]; pollen tube development [GO:0048868]; pollen tube growth [GO:0009860]; protein transport [GO:0015031]; regulation of pollen tube growth [GO:0080092] TISSUE SPECIFICITY: Specifically expressed in pollen and localized to the tips of growing pollen tubes. {ECO:0000269|PubMed:19208902}. locus:2152753;,locus:2082269; AT5G47960,AT3G12160 ras-related protein Ras-related protein RGP1 (GTP-binding regulatory protein RGP1),Os09g0281700 protein (Fragment) P25766,Q0J2Y2 RLGP1_ORYSJ,Q0J2Y2_ORYSJ RGP1 Os09g0281700 LOC_Os09g10940 P0645D04.22-1,Os09g0281700 OSNPB_090281700 FUNCTION: May play an important role in plant growth and development. ENOG411DSD3 A0A1I9LTP3,F4JCI4 A0A1I9LTP3_ARATH,F4JCI4_ARATH Alpha-galactosidase (EC 3.2.1.22) (Melibiase) 3.2.1.22 53719,72343 Alpha-galactosidase (EC 3.2.1.22) (Melibiase) raffinose alpha-galactosidase activity [GO:0052692]; carbohydrate metabolic process [GO:0005975],cell wall [GO:0005618]; raffinose alpha-galactosidase activity [GO:0052692]; carbohydrate metabolic process [GO:0005975] locus:2079221; AT3G26380 Inherit from KOG: alpha-galactosidase Alpha-galactosidase (EC 3.2.1.22) (Melibiase) Q5QLK3 Q5QLK3_ORYSJ Os01g0518500 Os01g0518500 B1003B09.6 OSNPB_010518500 ENOG411DSD2 ANTR4,ANTR3,PHT4:3,PHT4:2 Q66GI9,Q7XJR2,A0A1I9LP06,A0A1I9LP04,A0A1P8B2A2,A0A1I9LP07,A0A1I9LP03 ANTR4_ARATH,ANTR3_ARATH,A0A1I9LP06_ARATH,A0A1I9LP04_ARATH,A0A1P8B2A2_ARATH,A0A1I9LP07_ARATH,A0A1I9LP03_ARATH Probable anion transporter 4, chloroplastic (Phosphate transporter PHT4;3),Probable anion transporter 3, chloroplastic (Phosphate transporter PHT4;2),Phosphate transporter 43,Phosphate transporter 42 FUNCTION: Inorganic phosphate and probable anion transporter. {ECO:0000269|PubMed:18086223}. 3.6.3.27; 58243,55307,38469,63755,61233,31626,38398 Probable anion transporter 4, chloroplastic (Phosphate transporter PHT4;3),Probable anion transporter 3, chloroplastic (Phosphate transporter PHT4;2),Phosphate transporter 43,Phosphate transporter 42 chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; inorganic phosphate transmembrane transporter activity [GO:0005315]; anion transmembrane transport [GO:0098656],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in leaf veins and root tips. {ECO:0000269|PubMed:18086223, ECO:0000269|PubMed:19513231}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:19513231}. locus:2075586;,locus:2065615; AT3G46980,AT2G38060 anion transporter Probable anion transporter 2, chloroplastic (Phosphate transporter 4;2),Os01g0852200 protein (Fragment) Q53WP9,A0A0P0VAE6 PHT42_ORYSJ,A0A0P0VAE6_ORYSJ PHT4;2 Os05g0451100 LOC_Os05g37820 OJ1576_F01.6,Os01g0852200 OSNPB_010852200 FUNCTION: Probable anion transporter. {ECO:0000250}. ENOG411DSD1 MQL5.24 A0A1P8BEJ0,A0A1P8BEL0,A0A1P8BEJ2,A0A1P8BEI4,F4JX46 A0A1P8BEJ0_ARATH,A0A1P8BEL0_ARATH,A0A1P8BEJ2_ARATH,A0A1P8BEI4_ARATH,F4JX46_ARATH Uncharacterized protein 56505,67982,61841,56946,70150 Uncharacterized protein locus:2171499; AT5G47380 Protein of unknown function DUF547 Expressed protein (Os10g0559800 protein) Q108Y5 Q108Y5_ORYSJ Os10g0559800 LOC_Os10g41040 Os10g0559800 OSNPB_100559800 ENOG411DSD0 CAT9 Q9C5D6,A0A1P8AU30,A0A1P8AU13,A0A1P8AU02 CAAT9_ARATH,A0A1P8AU30_ARATH,A0A1P8AU13_ARATH,A0A1P8AU02_ARATH Cationic amino acid transporter 9, chloroplastic,Cationic amino acid transporter 9 FUNCTION: Permease involved in the transport of the cationic amino acids. {ECO:0000250}. R-ATH-352230; 60176,52592,48119,55596 Cationic amino acid transporter 9, chloroplastic,Cationic amino acid transporter 9 chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171],integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, and leaves. {ECO:0000269|PubMed:15377779}. locus:2198861; AT1G05940 amino acid Amino acid permease-like (Os02g0655700 protein) Q6H6H8 Q6H6H8_ORYSJ Os02g0655700 OJ1003_B06.31 OSNPB_020655700 P0519E06.15 ENOG411DSD9 DGK3,DGK7,DGK4 Q8VZG1,F4JQ95,Q1PDI2,A0A1P8B509 DGK3_ARATH,DGK7_ARATH,DGK4_ARATH,A0A1P8B509_ARATH Diacylglycerol kinase 3 (AtDGK3) (DAG kinase 3) (EC 2.7.1.107) (Diglyceride kinase 3) (DGK 3),Diacylglycerol kinase 7 (AtDGK7) (DAG kinase 7) (EC 2.7.1.107) (Diglyceride kinase 7) (DGK 7),Diacylglycerol kinase 4 (AtDGK4) (DAG kinase 4) (EC 2.7.1.107) (Diglyceride kinase 4) (DGK 4),Diacylglycerol kinase 7 FUNCTION: Phosphorylates the second messenger diacylglycerol (DAG) to generate phosphatidic acid (PA), another important signaling molecule. PA is required for plant development and responses to abiotic stress and pathogen attack. May be involved in the accumulation of PA during cold stress (By similarity). {ECO:0000250}.,FUNCTION: Phosphorylates the second messenger diacylglycerol (DAG) to generate phosphatidic acid (PA), another important signaling molecule. PA is required for plant development and responses to abiotic stress and pathogen attack. May be involved in the accumulation of PA during cold stress xhibits high specificity for 1,2-dioleoyl-sn-glycerol (1,2-DOG), 1-palmitoyl, 2-oleoyl-sn-glycerol (1,2 POG), 1-stearoyl, 2-linoleoyl-sn-glycerol (1,2-SLG) and 1-oleoyl, 2-palmitoyl-sn-glycerol (1,2-OPG). {ECO:0000269|PubMed:16081412, ECO:0000269|PubMed:23346092}. ARA:AT2G18730-MONOMER;,ARA:AT5G57690-MONOMER; R-ATH-114508; Glycerophospholipid metabolism (00564),Metabolic pathways (01100),Phosphatidylinositol signaling system (04070),Glycerolipid metabolism (00561) 2.7.1.107 53881,54572,54181,41192 Diacylglycerol kinase 3 (AtDGK3) (DAG kinase 3) (EC 2.7.1.107) (Diglyceride kinase 3) (DGK 3),Diacylglycerol kinase 7 (AtDGK7) (DAG kinase 7) (EC 2.7.1.107) (Diglyceride kinase 7) (DGK 7),Diacylglycerol kinase 4 (AtDGK4) (DAG kinase 4) (EC 2.7.1.107) (Diglyceride kinase 4) (DGK 4),Diacylglycerol kinase 7 membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; diacylglycerol kinase activity [GO:0004143]; NAD+ kinase activity [GO:0003951]; defense response [GO:0006952]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; diacylglycerol kinase activity [GO:0004143]; NAD+ kinase activity [GO:0003951]; defense response [GO:0006952]; leaf development [GO:0048366]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205]; root development [GO:0048364],ATP binding [GO:0005524]; diacylglycerol kinase activity [GO:0004143]; NAD+ kinase activity [GO:0003951]; defense response [GO:0006952]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205],diacylglycerol kinase activity [GO:0004143]; NAD+ kinase activity [GO:0003951]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205] TISSUE SPECIFICITY: Highly expressed in flowers, and at low levels in roots, stems and leaves. {ECO:0000269|PubMed:16081412}. locus:2053978;,locus:2118791;,locus:2172575; AT2G18730,AT4G30340,AT5G57690 Diacylglycerol kinase Diacylglycerol kinase (DAG kinase) (EC 2.7.1.107) Q6K4P5 Q6K4P5_ORYSJ Os02g0787800 OSJNBa0054K20.17 OSNPB_020787800 ENOG411DSD8 PME31 Q9LVQ0 PME31_ARATH Pectinesterase 31 (PE 31) (EC 3.1.1.11) (Pectin methylesterase 31) (AtPME31) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Acts in a blockwise manner, resulting in a cell wall rigidification. {ECO:0000250, ECO:0000269|PubMed:18936961}. MISCELLANEOUS: This is the only member of the pectinesterase family that do not contain a transmembrane or a signal peptide. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G29090-MONOMER; 3.1.1.11 35520 Pectinesterase 31 (PE 31) (EC 3.1.1.11) (Pectin methylesterase 31) (AtPME31) cell wall [GO:0005618]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; defense response to Gram-negative bacterium [GO:0050829]; pectin catabolic process [GO:0045490]; pectin metabolic process [GO:0045488] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2094652; AT3G29090 pectinesterase Os10g0407000 protein (Pectinesterase family protein, expressed) (Putative pectin methylesterase) (cDNA clone:J033043C06, full insert sequence) Q7XEU2 Q7XEU2_ORYSJ OSJNBa0060A14.17 LOC_Os10g26680 Os10g0407000 OsJ_31472 OSNPB_100407000 ENOG411DX75 ADAP,WRI4 Q94AN4,A0JPZ8,A0A1P8AP53,A8MQS2,A0A1P8ATB5,A0A1P8ATD6,A0A1P8AP44 AP2L1_ARATH,AP2L3_ARATH,A0A1P8AP53_ARATH,A8MQS2_ARATH,A0A1P8ATB5_ARATH,A0A1P8ATD6_ARATH,A0A1P8AP44_ARATH AP2-like ethylene-responsive transcription factor At1g16060,AP2-like ethylene-responsive transcription factor At1g79700,ARIA-interacting double AP2 domain protein,Integrase-type DNA-binding superfamily protein Early germination: Increased growth rate; Sensitive to drought; Insensitive to ABA; Resistant to salt stress-S. Kim-2009 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 39171,34238,23642,35411,26044,26639,21346 AP2-like ethylene-responsive transcription factor At1g16060,AP2-like ethylene-responsive transcription factor At1g79700,ARIA-interacting double AP2 domain protein,Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; negative regulation of seed germination [GO:0010187]; positive regulation of cutin biosynthetic process [GO:1901959]; positive regulation of fatty acid biosynthetic process [GO:0045723]; regulation of growth [GO:0040008]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; multicellular organism development [GO:0007275]; positive regulation of cutin biosynthetic process [GO:1901959]; positive regulation of fatty acid biosynthetic process [GO:0045723]; positive regulation of wax biosynthetic process [GO:1904278]; transcription, DNA-templated [GO:0006351] locus:2200477;,locus:2017829; AT1G16060,AT1G79700 AP2-like ethylene-responsive transcription factor Os09g0423800 protein (Fragment),AP2-EREBP transcription factor (Os08g0442400 protein) (cDNA clone:002-115-F07, full insert sequence) Q0J1N6,Q0J5D4 Q0J1N6_ORYSJ,Q0J5D4_ORYSJ Os09g0423800 OSNPB_090423800,Os08g0442400 Os08g0442400 OSNPB_080442400 ENOG411DX77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase Glutathione S-transferase, N-terminal domain containing protein, expressed (Os03g0135300 protein) (Putative glutathione S-transferase) (cDNA clone:001-035-F06, full insert sequence) (cDNA clone:J023107J18, full insert sequence) Q8H8E0 Q8H8E0_ORYSJ Os03g0135300 LOC_Os03g04260 Os03g0135300 OJ1006F06.5 OsJ_09313 OSNPB_030135300 ENOG411DX76 ALG3 O82244,A0A1P8AZV0 ALG3_ARATH,A0A1P8AZV0_ARATH Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase (EC 2.4.1.258) (Alpha-1,3-mannosyltransferase ALG3) (Asparagine-linked glycosylation protein 3) (AtALG3) (Not56-like protein),Asparagine-linked glycosylation 3 DISRUPTION PHENOTYPE: No obvious phenotype under normal and high temperature or salt/osmotic stress conditions. {ECO:0000269|PubMed:20356820}. Abnormal N-glycan composition; No other phenotypes detected-K. Fujiyama-2010 FUNCTION: Required for N-linked oligosaccharide assembly. Adds the sixth mannose residue in an alpha-1,3 linkage onto the dolichol-PP-oligosaccharide precursor dolichol-PP-Man(5)GlcNAc(2). {ECO:0000269|PubMed:18567790, ECO:0000269|PubMed:20356820}. MISCELLANEOUS: In the absence of ALG3 activity, the N-glycans transferred to proteins are aberrant, indicating that the oligosaccharyltransferase (OST) complex is substrate-tolerant. PATHWAY: Protein modification; protein glycosylation. ARA:AT2G47760-MONOMER; R-ATH-446193; 2.4.1.258; 2.4.1.258 49243,46290 Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase (EC 2.4.1.258) (Alpha-1,3-mannosyltransferase ALG3) (Asparagine-linked glycosylation protein 3) (AtALG3) (Not56-like protein),Asparagine-linked glycosylation 3 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; alpha-1,3-mannosyltransferase activity [GO:0000033]; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity [GO:0052925]; protein glycosylation [GO:0006486],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; transferase activity, transferring hexosyl groups [GO:0016758] locus:2043343; AT2G47760 dol-P-Man Man(5)GlcNAc(2)-PP-Dol alpha-13-mannosyltransferase-like Os01g0172000 protein A0A0P0UZ40 A0A0P0UZ40_ORYSJ Os01g0172000 OSNPB_010172000 ENOG411DX71 Q9ZQ87 Q9ZQ87_ARATH Expressed protein (SPFH/Band 7/PHB domain-containing membrane-associated protein family) R-ATH-382556; 40596 Expressed protein (SPFH/Band 7/PHB domain-containing membrane-associated protein family) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; cholesterol binding [GO:0015485]; ubiquitin protein ligase binding [GO:0031625]; SREBP signaling pathway [GO:0032933]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2063857; AT2G03510 PHB Os03g0421400 protein A0A0N7KHG4 A0A0N7KHG4_ORYSJ Os03g0421400 OSNPB_030421400 ENOG411DX70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os08g0518400 protein (Fragment),Os05g0246600 protein (Fragment) A0A0P0XI13,A0A0N7KKE6 A0A0P0XI13_ORYSJ,A0A0N7KKE6_ORYSJ Os08g0518400 OSNPB_080518400,Os05g0246600 OSNPB_050246600 ENOG411DX73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411DX72 Q96252 ATP4_ARATH ATP synthase subunit delta', mitochondrial (F-ATPase delta' subunit) FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. 21548 ATP synthase subunit delta', mitochondrial (F-ATPase delta' subunit) mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) [GO:0000275]; mitochondrion [GO:0005739]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; zinc ion binding [GO:0008270]; ATP synthesis coupled proton transport [GO:0015986]; response to salt stress [GO:0009651] locus:2171022; AT5G47030 atp synthase Os07g0495200 protein (Putative ATP synthase delta' chain, mitochondrial) (cDNA clone:J023078O13, full insert sequence) Q8GTK7 Q8GTK7_ORYSJ OJ1457_D07.102 OJ1058_B11.123 Os07g0495200 OSNPB_070495200 ENOG411DX79 PRP38 Q8LB54 PRP38_ARATH Pre-mRNA-splicing factor 38 FUNCTION: Probably required for the first pre-mRNA cleavage reaction catalyzed by the spliceosome. {ECO:0000250}. R-ATH-72163; 43172 Pre-mRNA-splicing factor 38 precatalytic spliceosome [GO:0071011]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2064811; AT2G40650 PRP38 family Os09g0103600 protein (Pre-mRNA splicing factor PRP38 protein-like) Q69K06 Q69K06_ORYSJ Os09g0103600 OSJNBa0006G10.4 OSNPB_090103600 P0414D03.36 ENOG411DX78 Q9SLD9,Q94A99,F4JM84,F4JM82 Q9SLD9_ARATH,Q94A99_ARATH,F4JM84_ARATH,F4JM82_ARATH Expressed protein (High-affinity nickel-transport family protein),AT4g35080/M4E13_135 (High-affinity nickel-transport family protein),High-affinity nickel-transport family protein 39687,38527,35616,41430 Expressed protein (High-affinity nickel-transport family protein),AT4g35080/M4E13_135 (High-affinity nickel-transport family protein),High-affinity nickel-transport family protein integral component of membrane [GO:0016021] locus:2059889;,locus:2131581; AT2G16800,AT4G35080 high-affinity nickel-transport family protein Chloroplast zebra-necrosis protein (High-affinity nickel-transport protein-like) (Os06g0116400 protein) (cDNA clone:001-205-F10, full insert sequence),High-affinity nickel-transport family protein, putative, expressed (Os03g0156700 protein) Q8H658,Q8LMQ1 Q8H658_ORYSJ,Q8LMQ1_ORYSJ ZN Os06g0116400 OSJNBa0019F11.26 OSNPB_060116400,Os03g0156700 LOC_Os03g06090 Os03g0156700 OsJ_00798 OSJNBa0011L14.10 OSNPB_030156700 ENOG411DX7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411DX7D IAR1 Q9M647,A0A1P8ATB0 IAR1_ARATH,A0A1P8ATB0_ARATH IAA-alanine resistance protein 1,ZIP metal ion transporter family Insensitive to IAA-Ala-B. Bartel-2000 FUNCTION: May participate in auxin metabolism or response. Probable transporter. R-ATH-442380; 50583,46896 IAA-alanine resistance protein 1,ZIP metal ion transporter family endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; zinc ion transmembrane transporter activity [GO:0005385]; cellular zinc ion homeostasis [GO:0006882]; zinc II ion transmembrane transport [GO:0071577],integral component of membrane [GO:0016021]; metal ion transmembrane transporter activity [GO:0046873] locus:2200266; AT1G68100 IAA-alanine resistance protein Os08g0467400 protein (Putative IAA-alanine resistance protein) (cDNA clone:J023054A11, full insert sequence) Q6YSC5 Q6YSC5_ORYSJ Os08g0467400 OSNPB_080467400 P0104B02.41 P0470B03.12 ENOG411DX7G Q93Y16,A0A1P8ATZ2,A0A1P8ATW0 DEAH4_ARATH,A0A1P8ATZ2_ARATH,A0A1P8ATW0_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22),RNA helicase family protein FUNCTION: May be involved in pre-mRNA splicing. {ECO:0000305}. 3.6.4.13 78370,60287,62215 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22),RNA helicase family protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA processing [GO:0006396]; RNA splicing [GO:0008380],ATP binding [GO:0005524]; helicase activity [GO:0004386] locus:2010549; AT1G27900 RNA helicase Helicase associated domain family protein, expressed (Os11g0310800 protein) Q2R6C2 Q2R6C2_ORYSJ Os11g0310800 LOC_Os11g20554 Os11g0310800 OsJ_33742 OSNPB_110310800 ENOG411DX7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX7A Q9LVK2,Q9SLL2 BIG1A_ARATH,BIG1B_ARATH Protein BIG GRAIN 1-like A,Protein BIG GRAIN 1-like B FUNCTION: Involved in auxin transport. Regulator of the auxin signaling pathway. {ECO:0000250|UniProtKB:Q10R09}. 40076,41770 Protein BIG GRAIN 1-like A,Protein BIG GRAIN 1-like B plasma membrane [GO:0005886]; auxin transport [GO:0060918]; auxin-activated signaling pathway [GO:0009734]; positive regulation of auxin mediated signaling pathway [GO:0010929] locus:2088192;,locus:2020153; AT3G13980,AT1G54200 NA NA NA NA NA NA NA NA ENOG411DX7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AhpC/TSA family Os03g0284600 protein (UPF0308 protein, chloroplast, putative, expressed),Os01g0929967 protein (Fragment) Q10N28,A0A0P0VCP9 Q10N28_ORYSJ,A0A0P0VCP9_ORYSJ LOC_Os03g17600 Os03g0284600 OsJ_10400 OSNPB_030284600,Os01g0929967 OSNPB_010929967 ENOG411DX7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Purple acid phosphatase (EC 3.1.3.2) B9GEG4 B9GEG4_ORYSJ Os12g0637000 OsJ_37000 OSNPB_120637000 ENOG411DX7M ACA6,ACA4 Q9SUB4,F4JIK2 ATCA6_ARATH,ATCA4_ARATH Alpha carbonic anhydrase 6 (AtaCA6) (AtalphaCA6) (EC 4.2.1.1) (Alpha carbonate dehydratase 6),Alpha carbonic anhydrase 4 (AtaCA4) (AtalphaCA4) (EC 4.2.1.1) (Alpha carbonate dehydratase 4) FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000250}. ARA:AT4G21000-MONOMER; R-ATH-1237044;R-ATH-1247673;R-ATH-1475029; 4.2.1.1 29948,30593 Alpha carbonic anhydrase 6 (AtaCA6) (AtalphaCA6) (EC 4.2.1.1) (Alpha carbonate dehydratase 6),Alpha carbonic anhydrase 4 (AtaCA4) (AtalphaCA4) (EC 4.2.1.1) (Alpha carbonate dehydratase 4) chloroplast stroma [GO:0009570]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; one-carbon metabolic process [GO:0006730],chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; one-carbon metabolic process [GO:0006730] locus:2133129;,locus:2133119; AT4G21000,AT4G20990 carbonic anhydrase NA NA NA NA NA NA NA ENOG411DX7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DX7I Q8L733 Y4121_ARATH Putative transferase At4g12130, mitochondrial (EC 2.1.-.-) (Iron-sulfur cluster assembly factor homolog COG0354) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:21984653}. FUNCTION: Folate-dependent protein involved in Fe/S cluster biogenesis. Functionally complements an E.coli mutant defective in ygfZ. {ECO:0000269|PubMed:20489182, ECO:0000269|PubMed:21984653}. 2.1.-.- 43528 Putative transferase At4g12130, mitochondrial (EC 2.1.-.-) (Iron-sulfur cluster assembly factor homolog COG0354) mitochondrial matrix [GO:0005759]; transferase activity [GO:0016740]; iron-sulfur cluster assembly [GO:0016226] TISSUE SPECIFICITY: Expressed in flowers, siliques and seeds (at protein level). {ECO:0000269|PubMed:21984653}. locus:2118041; AT4G12130 Aminomethyltransferase folate-binding domain Glycine cleavage T protein-like (Os06g0134800 protein) (cDNA clone:001-119-F10, full insert sequence) Q5VNV1 Q5VNV1_ORYSJ Os06g0134800 Os06g0134800 OSNPB_060134800 P0001H02.16 P0548D03.1 ENOG411DX7H SNL2,SNL5,SNL3,SNL6,SNL4,SNL1,MJE4.6 Q9LFQ3,Q9XIE1,O48686,Q9XIK6,O04539,Q9SRH9,Q9LFQ1,Q9SY67,Q9FJS7,Q84R24,F4K8B0,F4I962,F4IEM8,A0A1P8AX02,A0A1P8BFD5,A0A1P8AQ30,A0A1P8ARW9,F4K8B2,A0A1P8AQ85,F4JAQ8,F4IEN0,F4I964,F4IEM7 SNL2_ARATH,SNL5_ARATH,SNL3_ARATH,SNL6_ARATH,SNL4_ARATH,SNL1_ARATH,Q9LFQ1_ARATH,Q9SY67_ARATH,Q9FJS7_ARATH,Q84R24_ARATH,F4K8B0_ARATH,F4I962_ARATH,F4IEM8_ARATH,A0A1P8AX02_ARATH,A0A1P8BFD5_ARATH,A0A1P8AQ30_ARATH,A0A1P8ARW9_ARATH,F4K8B2_ARATH,A0A1P8AQ85_ARATH,F4JAQ8_ARATH,F4IEN0_ARATH,F4I964_ARATH,F4IEM7_ARATH Paired amphipathic helix protein Sin3-like 2,Paired amphipathic helix protein Sin3-like 5,Paired amphipathic helix protein Sin3-like 3 (Histone deacetylase complex subunit Sin3) (AtSin3) (Transcriptional corepressor Sin3),Paired amphipathic helix protein Sin3-like 6,Paired amphipathic helix protein Sin3-like 4,Paired amphipathic helix protein Sin3-like 1,Paired amphipathic helix (PAH2) superfamily protein (Uncharacterized protein F2G14_160),F14N23.13 (Paired amphipathic helix Sin3-like protein),Gb|AAB61107.1 (Paired amphipathic helix (PAH2) superfamily protein),Paired amphipathic helix (PAH2) superfamily protein (Uncharacterized protein At1g70030),SIN3-like 2,SIN3-like 3,SIN3-like 5,Paired amphipathic helix Sin3-like protein,Paired amphipathic helix (PAH2) superfamily protein,SIN3-like 1 FUNCTION: Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability (By similarity). {ECO:0000250}.,FUNCTION: Acts as a transcriptional repressor. Interacts with ERF7 to repress genes in abscisic acid and drought stress responses. The heterodimer represses transcription by tethering SNL3 to DNA. {ECO:0000269|PubMed:15994908}.,FUNCTION: Acts as a transcriptional repressor. An histone deacetylase (HDAC) activity is required for transcription repression. May play a role in telomere stability. {ECO:0000269|PubMed:19962994}. MISCELLANEOUS: Loss-of-function mutant (antisense inhibition) leads to abscisic acid hypersensitivity in germination. 155119,132600,151200,134417,150792,156209,10287,8996,18339,18723,153817,150824,133027,151787,13835,16153,128542,15985,14355,154924,132098,22764,131362 Paired amphipathic helix protein Sin3-like 2,Paired amphipathic helix protein Sin3-like 5,Paired amphipathic helix protein Sin3-like 3 (Histone deacetylase complex subunit Sin3) (AtSin3) (Transcriptional corepressor Sin3),Paired amphipathic helix protein Sin3-like 6,Paired amphipathic helix protein Sin3-like 4,Paired amphipathic helix protein Sin3-like 1,Paired amphipathic helix (PAH2) superfamily protein (Uncharacterized protein F2G14_160),F14N23.13 (Paired amphipathic helix Sin3-like protein),Gb|AAB61107.1 (Paired amphipathic helix (PAH2) superfamily protein),Paired amphipathic helix (PAH2) superfamily protein (Uncharacterized protein At1g70030),SIN3-like 2,SIN3-like 3,SIN3-like 5,Paired amphipathic helix Sin3-like protein,Paired amphipathic helix (PAH2) superfamily protein,SIN3-like 1 chromatin [GO:0000785]; cytosol [GO:0005829]; histone deacetylase complex [GO:0000118]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; transcription, DNA-templated [GO:0006351],chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; transcription, DNA-templated [GO:0006351],chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; negative regulation of transcription, DNA-templated [GO:0045892]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351],chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; nucleus [GO:0005634]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351],chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355] locus:2147845;,locus:2032382;,locus:2020563;,locus:2100277;,locus:2147870;,locus:2012838;,locus:2165887;,locus:2020603;,locus:2025956;,locus:2032397; AT5G15020,AT1G59890,AT1G24190,AT1G10450,AT1G70060,AT3G01320,AT5G15040,AT1G10250,AT5G35610,AT1G70030,AT5G15030,AT1G24200 Paired amphipathic helix protein Sin3-like Os01g0109700 protein (Fragment),Os05g0100500 protein (Fragment),Os08g0339750 protein Q0JRB9,Q0DLI6,A0A0N7KPP5 Q0JRB9_ORYSJ,Q0DLI6_ORYSJ,A0A0N7KPP5_ORYSJ Os01g0109700 Os01g0109700 OSNPB_010109700,Os05g0100500 Os05g0100500 OSNPB_050100500,Os08g0339750 OSNPB_080339750 ENOG411DX7K BUB1 F4IVI0 BUB1_ARATH Mitotic checkpoint serine/threonine-protein kinase BUB1 (AtBUB1) (EC 2.7.11.1) (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 1) FUNCTION: Serine/threonine-protein kinase that performs 2 crucial functions during mitosis: it is essential for spindle-assembly checkpoint signaling and for correct chromosome alignment. Has a key role in the assembly of checkpoint proteins at the kinetochore. Acts as a substrate for anaphase-promoting complex or cyclosome (APC/C). Necessary for ensuring proper chromosome segregation. Can regulate chromosome segregation in a kinetochore-independent manner. The BUB1-BUB3 complex plays a role in the inhibition of APC/C when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. Kinase activity is essential for inhibition of APC/CCDC20 and for chromosome alignment but does not play a major role in the spindle-assembly checkpoint activity (By similarity). {ECO:0000250}. R-ATH-141430;R-ATH-174184; 2.7.11.1 61123 Mitotic checkpoint serine/threonine-protein kinase BUB1 (AtBUB1) (EC 2.7.11.1) (Protein BUDDING UNINHIBITED BY BENZYMIDAZOL 1) condensed nuclear chromosome kinetochore [GO:0000778]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; cell division [GO:0051301]; meiotic sister chromatid cohesion, centromeric [GO:0051754]; mitotic spindle assembly checkpoint [GO:0007094] locus:2827363; AT2G20635 checkpoint serine threonine-protein kinase Os07g0508500 protein B9FXF7 B9FXF7_ORYSJ Os07g0508500 OsJ_24392 OSNPB_070508500 ENOG411DX7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0249300 protein) Q53JL1 Q53JL1_ORYSJ Os11g0249300 LOC_Os11g14390 Os11g0249300 OSNPB_110249300 ENOG411DX7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) Os01g0153500 protein,Os01g0153900 protein Q5ZD69,A0A0P0UYI1 Q5ZD69_ORYSJ,A0A0P0UYI1_ORYSJ Os01g0153500 Os01g0153500 OsJ_00417 OSNPB_010153500 P0030H07.27,Os01g0153900 OSNPB_010153900 ENOG411DX7T MXC9.8 O81015,Q9FMQ0 O81015_ARATH,Q9FMQ0_ARATH At2g26920 (Ubiquitin-associated/translation elongation factor EF1B protein) (Uncharacterized protein At2g26920),AT5g12120/MXC9_8 (At5g12120) (Ubiquitin-associated/translation elongation factor EF1B protein) (Uncharacterized protein At5g12120) 71058,67884 At2g26920 (Ubiquitin-associated/translation elongation factor EF1B protein) (Uncharacterized protein At2g26920),AT5g12120/MXC9_8 (At5g12120) (Ubiquitin-associated/translation elongation factor EF1B protein) (Uncharacterized protein At5g12120) translation elongation factor activity [GO:0003746],plasma membrane [GO:0005886]; translation elongation factor activity [GO:0003746] locus:2039513;,locus:2177043; AT2G26920,AT5G12120 Inherit from NOG: TS-N domain-containing protein Os05g0409000 protein (Fragment) A0A0P0WM72 A0A0P0WM72_ORYSJ Os05g0409000 OSNPB_050409000 ENOG411DX7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Natural resistance-associated macrophage protein Metal transporter Nramp4,Os01g0503400 protein Q5QN13,A0A0P0V304,A0A0N7KD13 NRAM4_ORYSJ,A0A0P0V304_ORYSJ,A0A0N7KD13_ORYSJ NRAMP4 Os01g0503400 LOC_Os01g31870 OsJ_01931 P0507H06.36-1 P0507H06.36-2,Os01g0503400 OSNPB_010503400 FUNCTION: Probable metal transporter. {ECO:0000250}. ENOG411DX7V WAG2,WAG1 Q9LUL2,Q9C8M5 WAG2_ARATH,WAG1_ARATH Serine/threonine-protein kinase WAG2 (EC 2.7.11.1),Serine/threonine-protein kinase WAG1 (EC 2.7.11.1) (Protein kinase 3) (AtPK3) DISRUPTION PHENOTYPE: Enhanced root waving when grown on agar plates. {ECO:0000269|PubMed:16460509}. Morphologically similar to wild type. When seedlings were grown on vertical plates root exhibited pronounced wavy pattern.,Morphologically similar to double mutant wag1-1/wag2-1. When seedlings were grown on vertical plates root exhibited pronounced wavy pattern. Gravitropism was not affected in mutant plants. Double mutant plants were more resistant to inhibition of root curling by auxin transport inhibitor NPA than wild type plants.,Morphologically similar to wild type. When seedlings were grown on vertical plates root exhibited wavy pattern.,Similar to wild type when seedlings were grown on vertical plates.,Morphologically similar to wild type. When seedlings were grown on vertical plates root exhibited slight wavy pattern. Overall phenotype identical to wag1-1 mutant allele. Wavy roots under vertical growth-J. Watson-2006 FUNCTION: Serine/threonine-protein kinase involved in the regulation of auxin signaling. Acts as a positive regulator of cellular auxin efflux and regulates organ development by enhancing PIN-mediated polar auxin transport. Phosphorylates conserved serine residues in the PIN auxin efflux carriers. Phosphorylation of PIN proteins is required and sufficient for apical-basal PIN polarity that enables directional intercellular auxin fluxes, which mediate differential growth, tissue patterning and organogenesis. Acts as suppressors of root waving. {ECO:0000269|PubMed:16460509, ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20823065}. MISCELLANEOUS: Over-expression of WAG1 induces a basal-to-apical shift in PIN1, PIN2 and PIN4 localization, resulting in the loss of auxin gradients and strong defects in embryo and seedling roots. {ECO:0000305|PubMed:20823065}. 2.7.11.1 54427,53820 Serine/threonine-protein kinase WAG2 (EC 2.7.11.1),Serine/threonine-protein kinase WAG1 (EC 2.7.11.1) (Protein kinase 3) (AtPK3) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; cotyledon development [GO:0048825]; intracellular signal transduction [GO:0035556]; regulation of growth [GO:0040008] DEVELOPMENTAL STAGE: Expressed throughout embryogenesis with higher expression in the cotyledon primordia at heart stages. {ECO:0000269|PubMed:19075219}. TISSUE SPECIFICITY: Expressed in root tips, lateral root primordia and emerging true leaf primordia. {ECO:0000269|PubMed:16460509}.,TISSUE SPECIFICITY: Expressed in root tips and lateral root primordia. {ECO:0000269|PubMed:16460509}. locus:2091035;,locus:2024892; AT3G14370,AT1G53700 S_TKc Os03g0253200 protein A0A0P0VVI3 A0A0P0VVI3_ORYSJ Os03g0253200 OSNPB_030253200 ENOG411DX7Q Q8RY11 Q8RY11_ARATH AT3g05350/T12H1_32 (Metallopeptidase M24 family protein) FUNCTION: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro. {ECO:0000250|UniProtKB:Q9VJG0}. 78709 AT3g05350/T12H1_32 (Metallopeptidase M24 family protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; metal ion binding [GO:0046872]; metalloaminopeptidase activity [GO:0070006] locus:2096319; AT3G05350 Xaa-Pro aminopeptidase Os07g0205700 protein (Putative X-prolyl aminopeptidase) (cDNA clone:J013130G17, full insert sequence) Q6ZIY1 Q6ZIY1_ORYSJ Os07g0205700 Os07g0205700 OJ1119_B04.6 OsJ_23499 OSNPB_070205700 ENOG411DX7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411DX7S PSKR1 Q9ZVR7 PSKR1_ARATH Phytosulfokine receptor 1 (AtPSKR1) (EC 2.7.11.1) (EC 4.6.1.2) (Guanylate cyclase) (Phytosulfokine LRR receptor kinase 1) (Protein serine-threonine kinase) DISRUPTION PHENOTYPE: Gradual loss of individual cells potential to form callus as the tissues mature (PubMed:16829587). Premature senescence of the leaves (PubMed:17989228). Limitted root growth (PubMed:19076296). Enhanced resistance to bacterial biotrophic pathogens, but increased susceptibility to necrotrophic fungal infection (PubMed:23062058). {ECO:0000269|PubMed:16829587, ECO:0000269|PubMed:17989228, ECO:0000269|PubMed:19076296, ECO:0000269|PubMed:23062058}. Compared to wildtype mutant cells gradually lose their ability to form calluses as they age.,Mutant calluses exhibit premature signs of senescence (browning within 3 weeks).,Mutant leaves display premature senescence four weeks after germination and are fully senesced after six weeks.,Treatment of hypocotyl segments of the mutant with auxin/cytokinin resuls in normal calluses development.,When grown on B5 agar the mutant seedlings were indistinguishable from wildtype albeit with a slight reduction in root growth. After three weeks of culture the mutant was morphologically identical from above-ground widltype plants.,Whereas wildtype callus growth is significantly promoted by 10mM phytosulfokine (PSK) calluses of the mutant are less sensitive to PSK. Slightly shorter roots; Early leaf senescence; Complete loss of hormone-induced callus formation-Y. Sakagami-2006 FUNCTION: Phytosulfokine receptor with both a serine/threonine-protein kinase activity and a guanylate cyclase activity (PubMed:21504901). Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Involved in plant immunity, with antagonistic effects on bacterial and fungal resistances (PubMed:23062058). Not involved in PSY perception. CNGC17 and AHAs form a functional cation-translocating unit that is activated by PSKR1/BAK1 and possibly other BAK1/RLK complexes (PubMed:26071421). {ECO:0000269|PubMed:16829587, ECO:0000269|PubMed:17989228, ECO:0000269|PubMed:21504901, ECO:0000269|PubMed:23062058}. MISCELLANEOUS: PSKR1 and PSYR1 mediate a signaling pathway by two distinct ligands, which redundantly contribute to cellular proliferation and plant growth. {ECO:0000269|PubMed:17989228}. 2.7.11.1; 4.6.1.2 112354 Phytosulfokine receptor 1 (AtPSKR1) (EC 2.7.11.1) (EC 4.6.1.2) (Guanylate cyclase) (Phytosulfokine LRR receptor kinase 1) (Protein serine-threonine kinase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; guanylate cyclase activity [GO:0004383]; peptide receptor activity [GO:0001653]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; innate immune response [GO:0045087]; regulation of defense response [GO:0031347] TISSUE SPECIFICITY: Weakly expressed in roots, leaves, stems and flowers (PubMed:16829587). Expressed in the primary and lateral roots, including root primordia and root tips, but not in the hypocotyl (PubMed:19076296). {ECO:0000269|PubMed:16829587, ECO:0000269|PubMed:19076296}. locus:2051628; AT2G02220 Phytosulfokine receptor Os04g0672600 protein (Fragment),OSJNBb0004A17.8 protein (Os04g0672100 protein),Os02g0629400 protein (cDNA clone:J013157D09, full insert sequence) Q0J947,Q7XPI1,Q0DZD2 Q0J947_ORYSJ,Q7XPI1_ORYSJ,Q0DZD2_ORYSJ Os04g0672600 Os04g0672600 OSNPB_040672600,OSJNBb0004A17.8 Os04g0672100 OSNPB_040672100,Os02g0629400 Os02g0629400 OSNPB_020629400 ENOG411DX7R DTA2,T20K12.170 Q6NKS0,F4IH50,Q9M2D7,A0A1I9LS97 Q6NKS0_ARATH,F4IH50_ARATH,Q9M2D7_ARATH,A0A1I9LS97_ARATH At2g45830 (Downstream target of AGL15 2),Downstream target of AGL15 2 (Glycosyltransferase),Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein At3g61270) (Uncharacterized protein T20K12.170),O-glucosyltransferase rumi-like protein (DUF821) 45769,61777,58524,45060 At2g45830 (Downstream target of AGL15 2),Downstream target of AGL15 2 (Glycosyltransferase),Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein At3g61270) (Uncharacterized protein T20K12.170),O-glucosyltransferase rumi-like protein (DUF821) endomembrane system [GO:0012505]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664],transferase activity [GO:0016740] locus:2050674;,locus:2098936; AT2G45830,AT3G61270 downstream target of AGL15 2 NA NA NA NA NA NA NA ENOG411DX7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411DX7X T19K24.16 O48587 O48587_ARATH At5g44730 (Dreg-2 like protein) (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) 28809 At5g44730 (Dreg-2 like protein) (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) hydrolase activity [GO:0016787]; metabolic process [GO:0008152] locus:2156299; AT5G44730 Haloacid dehalogenase-like hydrolase domain-containing protein Dreg-2 like protein (Os06g0665100 protein) (cDNA clone:006-310-E08, full insert sequence) (cDNA clone:J033034G21, full insert sequence) Q655Y3 Q655Y3_ORYSJ Os06g0665100 Os06g0665100 OsJ_22278 OSNPB_060665100 P0473H04.14 ENOG411DX7Z DLD Q94AX4 DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial (AtD-LDH) (EC 1.1.2.4) (D-lactate ferricytochrome C oxidoreductase) (Glycolate deshydrogenase) DISRUPTION PHENOTYPE: No visible phenotype when grown under standard conditions, but developmental retardation and lethality when grown in presence of methylglyoxal or D-lactate. {ECO:0000269|PubMed:19586914}. Sensitive to D-lactate and methylglyoxal (cytotoxic byproduct of glycolysis)-V. Maurino-2009 FUNCTION: Catalyzes the stereospecific oxidation of D-lactate to pyruvate. Involved in the detoxification of methylglyoxal and D-lactate, but probably not involved in the metabolization of glycolate. {ECO:0000269|PubMed:14966218, ECO:0000269|PubMed:19586914}. ARA:AT5G06580-MONOMER;MetaCyc:AT5G06580-MONOMER; 1.1.2.4 62176 D-lactate dehydrogenase [cytochrome], mitochondrial (AtD-LDH) (EC 1.1.2.4) (D-lactate ferricytochrome C oxidoreductase) (Glycolate deshydrogenase) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; D-lactate dehydrogenase (cytochrome) activity [GO:0004458]; D-lactate dehydrogenase activity [GO:0008720]; flavin adenine dinucleotide binding [GO:0050660]; glycolate dehydrogenase activity [GO:0019154]; glycolate oxidase activity [GO:0008891]; identical protein binding [GO:0042802]; methylglyoxal catabolic process [GO:0051596] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and roots. {ECO:0000269|PubMed:14966218}. locus:2144093; AT5G06580 D-lactate dehydrogenase cytochrome Os07g0163000 protein (cDNA clone:J013118L17, full insert sequence) B7EDV2 B7EDV2_ORYSJ Os07g0163000 OSNPB_070163000 ENOG411DU38 YY1 Q2V3L3,F4JGT7 YY1_ARATH,F4JGT7_ARATH Zinc finger transcription factor YY1 (Protein YIN YANG 1) (AtYY1),Zinc finger (C2H2 type) family protein DISRUPTION PHENOTYPE: Deregulated expression of glutaredoxins GRX480, GRXS13 and thioredoxin TRX-h5 leading to enhanced susceptibility to fungal infection (e.g. B.cinerea) (PubMed:24451981). Increased sensitivity to abscisic acid (ABA), drought, and salt (NaCl) stress. Reduced induction of ABR1, but reduced repression of RD29A, RD29B, and COR15A in response to abiotic stresses (PubMed:26961720). {ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. FUNCTION: Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. 44703,44015 Zinc finger transcription factor YY1 (Protein YIN YANG 1) (AtYY1),Zinc finger (C2H2 type) family protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of defense response to fungus [GO:1900150]; regulation of response to salt stress [GO:1901000]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to absence of light [GO:0009646]; response to light stimulus [GO:0009416]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] DEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}. TISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}. locus:1005716361; AT4G06634 zinc finger protein Os02g0551900 protein (cDNA clone:J033143G04, full insert sequence),Os05g0106000 protein (cDNA clone:J033129E14, full insert sequence),Os05g0106000 protein (Fragment) Q0E0H1,Q65XI2,A0A0N7KK05 Q0E0H1_ORYSJ,Q65XI2_ORYSJ,A0A0N7KK05_ORYSJ Os02g0551900 Os02g0551900 OsJ_07105 OSNPB_020551900,Os05g0106000 Os05g0106000 OsJ_16816 OSJNBb0035J08.11 OSNPB_050106000,Os05g0106000 OSNPB_050106000 ENOG411DU39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 58 (OsMADS58),MADS-box transcription factor 3 (OsMADS3) (Protein AGAMOUS-like) (RMADS222) Q2V0P1,Q40704 MAD58_ORYSJ,MADS3_ORYSJ MADS58 Os05g0203800 LOC_Os05g11414 OSJNBa0015G13.8,MADS3 RAG Os01g0201700 LOC_Os01g10504 DISRUPTION PHENOTYPE: Abnormal flowers with floral-like organs. {ECO:0000269|PubMed:16326928}.,DISRUPTION PHENOTYPE: Homeotic transformation of stamens into lodicules, and ectopic development of lodicules where they do not form in the wild-type. {ECO:0000269|PubMed:16326928}. FUNCTION: Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.,FUNCTION: Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. MISCELLANEOUS: The transformation of lodicules into stamens is observed in overexpressing plants. ENOG411DU34 F4IK72 F4IK72_ARATH Protein rolling protein 34644 Protein rolling protein integral component of membrane [GO:0016021] locus:505006323; AT2G47115 expressed protein Os07g0658100 protein (Fragment),Os01g0295600 protein A0A0P0X9N4,A0A0N7KCT1 A0A0P0X9N4_ORYSJ,A0A0N7KCT1_ORYSJ Os07g0658100 OSNPB_070658100,Os01g0295600 OSNPB_010295600 ENOG411DU35 FOLD4,FOLD2,FOLD3 O65271,Q9LHH7,O65269 FOLD4_ARATH,FOLD2_ARATH,FOLD3_ARATH Bifunctional protein FolD 4, chloroplastic (Protein EMBRYO DEFECTIVE 3127) (Tetrahydrofolate dehydrogenase/cyclohydrolase 4) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)],Bifunctional protein FolD 2 (Tetrahydrofolate dehydrogenase/cyclohydrolase 2) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)],Bifunctional protein FolD 3, chloroplastic (Tetrahydrofolate dehydrogenase/cyclohydrolase 3) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Embryo defective; Preglobular-D. Meinke-2011 FUNCTION: Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate. {ECO:0000250}. PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. ARA:AT4G00620-MONOMER;,ARA:AT3G12290-MONOMER;,ARA:AT4G00600-MONOMER; R-ATH-196757; 1.5.1.5; 3.5.4.9 38742,31590,33696 Bifunctional protein FolD 4, chloroplastic (Protein EMBRYO DEFECTIVE 3127) (Tetrahydrofolate dehydrogenase/cyclohydrolase 4) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)],Bifunctional protein FolD 2 (Tetrahydrofolate dehydrogenase/cyclohydrolase 2) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)],Bifunctional protein FolD 3, chloroplastic (Tetrahydrofolate dehydrogenase/cyclohydrolase 3) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] chloroplast [GO:0009507]; cytosol [GO:0005829]; methenyltetrahydrofolate cyclohydrolase activity [GO:0004477]; methylenetetrahydrofolate dehydrogenase (NADP+) activity [GO:0004488]; one-carbon metabolic process [GO:0006730]; photorespiration [GO:0009853]; tetrahydrofolate interconversion [GO:0035999],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; methenyltetrahydrofolate cyclohydrolase activity [GO:0004477]; methylenetetrahydrofolate dehydrogenase (NADP+) activity [GO:0004488]; one-carbon metabolic process [GO:0006730]; photorespiration [GO:0009853]; regulation of DNA methylation [GO:0044030]; tetrahydrofolate interconversion [GO:0035999]; tetrahydrofolate metabolic process [GO:0046653] locus:2127113;,locus:2082254;,locus:2127083; AT4G00620,AT3G12290,AT4G00600 Bifunctional protein Os02g0120900 protein,Os05g0150800 protein (cDNA clone:J033131D02, full insert sequence),Os05g0150800 protein (Fragment) Q0E4G1,Q5WN02,A0A0P0WI81 Q0E4G1_ORYSJ,Q5WN02_ORYSJ,A0A0P0WI81_ORYSJ Os02g0120900 Os02g0120900 OSNPB_020120900,Os05g0150800 OSNPB_050150800 P0001A07.7,Os05g0150800 OSNPB_050150800 ENOG411DU36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os04g0204200 protein (Fragment),Os05g0294900 protein,Os05g0295000 protein,Os07g0235600 protein A0A0P0W7Z7,A0A0P0WK67,A0A0P0WK80,A0A0N7KN63 A0A0P0W7Z7_ORYSJ,A0A0P0WK67_ORYSJ,A0A0P0WK80_ORYSJ,A0A0N7KN63_ORYSJ Os04g0204200 OSNPB_040204200,Os05g0294900 OSNPB_050294900,Os05g0295000 OSNPB_050295000,Os07g0235600 OSNPB_070235600 ENOG411DU37 RPN11,MQM1.19 Q9LT08,A8MR12,A0A1P8BGX5 PSDE_ARATH,A8MR12_ARATH,A0A1P8BGX5_ARATH 26S proteasome non-ATPase regulatory subunit 14 homolog (EC 3.4.19.-) (26S proteasome regulatory subunit RPN11) (AtRPN11),Mov34/MPN/PAD-1 family protein,JAB1/Mov34/MPN/PAD-1 ubiquitin protease FUNCTION: Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear (By similarity). {ECO:0000250}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-5689901;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.19.- 34353,29207,13991 26S proteasome non-ATPase regulatory subunit 14 homolog (EC 3.4.19.-) (26S proteasome regulatory subunit RPN11) (AtRPN11),Mov34/MPN/PAD-1 family protein,JAB1/Mov34/MPN/PAD-1 ubiquitin protease cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; Lys63-specific deubiquitinase activity [GO:0061578]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; protein catabolic process [GO:0030163]; response to salt stress [GO:0009651],Lys63-specific deubiquitinase activity [GO:0061578],Lys63-specific deubiquitinase activity [GO:0061578]; peptidase activity [GO:0008233] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2171696; AT5G23540 26S proteasome non-ATPase regulatory subunit Os06g0703600 protein (Putative 26S proteasome regulatory particle non-ATPase subunit11) (cDNA clone:002-174-E09, full insert sequence),26S proteasome regulatory particle non-ATPase subunit11 (Os01g0267200 protein) (Putative Pad1) (cDNA clone:J013022M19, full insert sequence),Os05g0371200 protein (Putative 26S proteasome non-ATPase regulatory subunit 14) (cDNA clone:006-302-D04, full insert sequence) (cDNA clone:006-309-B06, full insert sequence) (cDNA clone:J023062E06, full insert sequence),Os07g0129600 protein Q5Z816,Q9SDD1,Q60EW3,A0A0P0X2C5 Q5Z816_ORYSJ,Q9SDD1_ORYSJ,Q60EW3_ORYSJ,A0A0P0X2C5_ORYSJ Os06g0703600 Os06g0703600 OJ1215_E11.13 OSNPB_060703600,OsRPN11 Os01g0267200 OsJ_01223 OSNPB_010267200 P0011D01.14,Os05g0371200 Os05g0371200 OJ1118_F06.13 OsJ_18298 OSNPB_050371200,Os07g0129600 OSNPB_070129600 ENOG411DU30 DSEL O49523,A0A1P8B5V6,A0A1P8B5V5 DSEL_ARATH,A0A1P8B5V6_ARATH,A0A1P8B5V5_ARATH Phospholipase A1-IIgamma (EC 3.1.1.-) (DAD1-like seedling establishment-related lipase) (AtDSEL) (Phospholipase DSEL),Alpha/beta-Hydrolases superfamily protein DISRUPTION PHENOTYPE: Mildly fast-growing seedlings regardless of the presence of an exogenous carbon source, accompanied by a better beta-oxidation and mobilization of seed storage oils. {ECO:0000269|PubMed:21477884}. FUNCTION: Acylhydrolase that catalyzes the hydrolysis of 1,3-diacylglycerol (1,3-DAG) and 1-monoacylglycerol (1-MAG) at the sn-1 position. High activity toward 1,3-DAG and 1-MAG, but low activity toward 1,2-diacylglycerol (1,2-DAG) and 1-lysophosphatidylcholine (1-LPC), and no activity toward phosphatidylcholine (PC), monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG), triacylglycerol (TAG) and 2-monoacylglycerol (2-MAG). May be involved in the negative regulation of seedling establishment by inhibiting the breakdown, beta-oxidation and mobilization of seed storage oils. {ECO:0000269|PubMed:21477884}. ARA:AT4G18550-MONOMER;MetaCyc:AT4G18550-MONOMER; 3.1.1.- 47792,36847,49923 Phospholipase A1-IIgamma (EC 3.1.1.-) (DAD1-like seedling establishment-related lipase) (AtDSEL) (Phospholipase DSEL),Alpha/beta-Hydrolases superfamily protein cytoplasm [GO:0005737]; acylglycerol lipase activity [GO:0047372]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; diacylglycerol catabolic process [GO:0046340]; lipid storage [GO:0019915]; monoacylglycerol catabolic process [GO:0052651]; negative regulation of seed germination [GO:0010187],phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in seedlings, stems and siliques, and, to a lower extent, in flowers. {ECO:0000269|PubMed:21477884}. locus:2124529; AT4G18550 Lipase class 3 family protein Phospholipase A1-II 4 (EC 3.1.1.-),Os01g0652300 protein B9EYD3,A0A0P0V5Z9 PLA4_ORYSJ,A0A0P0V5Z9_ORYSJ Os01g0652300 LOC_Os01g46370 OsJ_02844,Os01g0652300 OSNPB_010652300 FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ENOG411DU31 ARP P45951,A0A1P8AX84,A0A1P8AX21,B3H7C2 ARP_ARATH,A0A1P8AX84_ARATH,A0A1P8AX21_ARATH,B3H7C2_ARATH DNA-(apurinic or apyrimidinic site) lyase, chloroplastic (EC 4.2.99.18) (Apurinic endonuclease-redox protein),DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:19372224, PubMed:19172180, PubMed:21781197, PubMed:25569774). Loss of chloroplastic glycosylase-lyase/endonuclease activity (PubMed:19372224). Hypersensitivity to 5-fluorouracil (PubMed:21781197). Ape1l arp double mutants have no visible phenotype (PubMed:19172180). Ape2 arp double mutants have no visible phenotype (PubMed:19172180). {ECO:0000269|PubMed:19172180, ECO:0000269|PubMed:19372224, ECO:0000269|PubMed:21781197, ECO:0000269|PubMed:25569774}. FUNCTION: Repairs oxidative DNA damages, seems also to act as a redox factor (PubMed:7512729). Is multifunctional and may be involved both in DNA repair and in the regulation of transcription (PubMed:7512729). Exhibits apurinic/apyrimidinic (AP) endonuclease activity (PubMed:25569774, PubMed:21781197, PubMed:25228464). Catalyzes the conversion of 3'-phosphor-alpha,beta-unsaturated aldehyde (3'-PUA) to 3'-OH (PubMed:25228464). May be involved in base excision repair in chloroplasts (PubMed:19372224). According to a report, has a significant in vitro 3'-phosphatase activity (PubMed:25228464). According to another report, has no in vitro 3'-phosphatase activity (PubMed:25569774). Has a strong non-specific affinity to DNA (PubMed:25228464). {ECO:0000269|PubMed:19372224, ECO:0000269|PubMed:21781197, ECO:0000269|PubMed:25228464, ECO:0000269|PubMed:25569774, ECO:0000269|PubMed:7512729, ECO:0000305|PubMed:19172180}. R-ATH-110357;R-ATH-110373;R-ATH-5651801;R-ATH-73933; 4.2.99.18 60260,59435,55164,45155 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic (EC 4.2.99.18) (Apurinic endonuclease-redox protein),DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) chloroplast nucleoid [GO:0042644]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; DNA binding [GO:0003677]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; double-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008311]; metal ion binding [GO:0046872]; phosphatase activity [GO:0016791]; phosphodiesterase I activity [GO:0004528]; base-excision repair [GO:0006284]; nucleotide-excision repair, DNA incision [GO:0033683]; positive regulation of transcription, DNA-templated [GO:0045893],intracellular [GO:0005622]; DNA binding [GO:0003677]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; metal ion binding [GO:0046872]; DNA repair [GO:0006281] TISSUE SPECIFICITY: Expressed in the siliques, flowers, and stems (PubMed:7512729). A high level expression is seen in the leaves (PubMed:7512729). Expressed in both vegetative and reproductive organs (PubMed:25228464). {ECO:0000269|PubMed:25228464, ECO:0000269|PubMed:7512729}. locus:2060540; AT2G41460 Apurinic endonuclease-redox DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) Q0JIH6,Q5VQJ9 Q0JIH6_ORYSJ,Q5VQJ9_ORYSJ Os01g0801100 Os01g0801100 OSNPB_010801100,Os01g0801000 Os01g0801000 OsJ_03774 OSNPB_010801000 P0003D09.14 P0691E06.46 ENOG411DU32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat shock cognate 70 kDa Heat shock cognate 70 kDa protein, putative, expressed (Os03g0277300 protein) Q10NA1 Q10NA1_ORYSJ Os03g0277300 LOC_Os03g16920 OsJ_10337 OSNPB_030277300 ENOG411DU33 MBB18.5 Q9FFW9,F4KBJ3 Q9FFW9_ARATH,F4KBJ3_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g38520),Alpha/beta-Hydrolases superfamily protein 39570,40992 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g38520),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chlorophyllase activity [GO:0047746]; chlorophyll metabolic process [GO:0015994] locus:2159823; AT5G38520 Hydrolase Os05g0419000 protein (cDNA clone:J013099K07, full insert sequence) Q60DW4 Q60DW4_ORYSJ Os05g0419000 Os05g0419000 OSNPB_050419000 P0426G01.8 ENOG411DU3M SHM4,SHM5,EDA36 O23254,Q9SVM4,A0A1P8B5D5 GLYC4_ARATH,GLYC5_ARATH,A0A1P8B5D5_ARATH Serine hydroxymethyltransferase 4 (AtSHMT4) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 4) (Serine methylase 4),Serine hydroxymethyltransferase 5 (AtSHMT5) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 5) (Protein EMBRYO SAC DEVELOPMENT ARREST 36) (Protein EMBRYO SAC DEVELOPMENT ARREST 37) (Serine methylase 5),Serine hydroxymethyltransferase (EC 2.1.2.1) Female gametophyte defective; Embryo defective (inferred)-V. Sundaresan-2005 FUNCTION: Catalyzes the interconversion of serine and glycine. {ECO:0000250}.,FUNCTION: Interconversion of serine and glycine. {ECO:0000256|RuleBase:RU000585}. PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion.,PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. {ECO:0000256|RuleBase:RU000585}. ARA:AT4G13930-MONOMER;,ARA:AT4G13890-MONOMER; 2.1.2.1 51718,52261,43656 Serine hydroxymethyltransferase 4 (AtSHMT4) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 4) (Serine methylase 4),Serine hydroxymethyltransferase 5 (AtSHMT5) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 5) (Protein EMBRYO SAC DEVELOPMENT ARREST 36) (Protein EMBRYO SAC DEVELOPMENT ARREST 37) (Serine methylase 5),Serine hydroxymethyltransferase (EC 2.1.2.1) cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; circadian rhythm [GO:0007623]; glycine biosynthetic process [GO:0006545]; response to cadmium ion [GO:0046686]; tetrahydrofolate interconversion [GO:0035999],cytoplasm [GO:0005737]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; glycine biosynthetic process [GO:0006545]; polar nucleus fusion [GO:0010197]; pollen development [GO:0009555]; tetrahydrofolate interconversion [GO:0035999],glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; glycine biosynthetic process [GO:0006545]; tetrahydrofolate interconversion [GO:0035999] TISSUE SPECIFICITY: Mostly expressed in flowers, less abundant in roots, inflorescence stems, and siliques, and barely detectable in leaves. {ECO:0000269|PubMed:10806255}. locus:2129251;,locus:2119545; AT4G13930,AT4G13890 interconversion of serine and glycine (By similarity) Serine hydroxymethyltransferase (EC 2.1.2.1),Os11g0455800 protein (Fragment) Q2QT32,A0A0P0Y248,A0A0P0Y200 Q2QT32_ORYSJ,A0A0P0Y248_ORYSJ,A0A0P0Y200_ORYSJ Os12g0409000 LOC_Os12g22030 OSNPB_120409000,Os11g0455800 OSNPB_110455800 FUNCTION: Interconversion of serine and glycine. {ECO:0000256|RuleBase:RU000585}. ENOG411DU3N GATA Q9LI77 GATA_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial (Glu-AdT subunit A) (EC 6.3.5.7) FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_03150, ECO:0000269|PubMed:18441100}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03150}. ARA:AT3G25660-MONOMER; 6.3.5.7 57181 Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial (Glu-AdT subunit A) (EC 6.3.5.7) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; glutamyl-tRNA(Gln) amidotransferase complex [GO:0030956]; mitochondrion [GO:0005739]; amidase activity [GO:0004040]; ATP binding [GO:0005524]; glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [GO:0050567]; translation [GO:0006412] locus:2102380; AT3G25660 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) (By similarity) Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial (Glu-AdT subunit A) (EC 6.3.5.7) Q7X8Z8,A0A0N7KJT1 GATA_ORYSJ,A0A0N7KJT1_ORYSJ GATA Os04g0643200 LOC_Os04g55050 OSJNBa0033G05.4 OSJNBa0063C18.18,Os04g0643200 GATA OSNPB_040643200 FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_03150}.,FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000256|HAMAP-Rule:MF_03150}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03150}.,MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000256|HAMAP-Rule:MF_03150}. ENOG411DU3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0508700 protein (Fragment),Os01g0775300 protein (Fragment),Os05g0508700 protein Q0DGW2,A0A0P0V8S3,A0A0P0WPC2,A0A0P0WPJ0 Q0DGW2_ORYSJ,A0A0P0V8S3_ORYSJ,A0A0P0WPC2_ORYSJ,A0A0P0WPJ0_ORYSJ Os05g0508700 Os05g0508700 OSNPB_050508700,Os01g0775300 OSNPB_010775300,Os05g0508700 OSNPB_050508700 ENOG411DU3I AATP1,AATP2 Q39002,P92935 TLC1_ARATH,TLC2_ARATH ADP,ATP carrier protein 1, chloroplastic (ADP/ATP translocase 1) (Adenine nucleotide translocase 1),ADP,ATP carrier protein 2, chloroplastic (ADP/ATP translocase 2) (Adenine nucleotide translocase 2) Necrotic leaf lesions in short day conditions at low light. Light-induced accumulation of H(2)O(2) and constitutive expression of genes for copper/zinc superoxide dismutase 2 and ascorbate peroxidase 1. FUNCTION: May function as an ATP importer. {ECO:0000269|PubMed:9025303}. MetaCyc:AT1G80300-MONOMER;,MetaCyc:AT1G15500-MONOMER; 68134,67530 ADP,ATP carrier protein 1, chloroplastic (ADP/ATP translocase 1) (Adenine nucleotide translocase 1),ADP,ATP carrier protein 2, chloroplastic (ADP/ATP translocase 2) (Adenine nucleotide translocase 2) chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATP:ADP antiporter activity [GO:0005471],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATP:ADP antiporter activity [GO:0005471] locus:2034235;,locus:2196588; AT1G80300,AT1G15500 Plastidic ATP ADP,ATP carrier protein Q6H8E4,Q5VQU1 Q6H8E4_ORYSJ,Q5VQU1_ORYSJ Os02g0208100 OJ1003_F05.23 OJ1006_A02.6 OSNPB_020208100,Os01g0647100 Os01g0647100 OSNPB_010647100 P0038D11.19 P0707D10.46 ENOG411DU3J Q9FNL2 PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100 52879 Pentatricopeptide repeat-containing protein At5g46100 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2161408; AT5G46100 Pentatricopeptide repeat-containing protein Os01g0672166 protein (Fragment) A0A0N7KDH3 A0A0N7KDH3_ORYSJ Os01g0672166 OSNPB_010672166 ENOG411DU3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD Os01g0965700 protein (Fragment) A0A0P0VD75 A0A0P0VD75_ORYSJ Os01g0965700 OSNPB_010965700 ENOG411DU3D CYP90A1,CPD Q42569,A8MRD1,F4K0T0 C90A1_ARATH,A8MRD1_ARATH,F4K0T0_ARATH Cytochrome P450 90A1 (EC 1.14.-.-),AT5G05690 protein (Cytochrome P450 superfamily protein),Cytochrome P450 superfamily protein Dwarf; Male sterile-C. Koncz-1996 ARA:AT5G05690-MONOMER;MetaCyc:AT5G05690-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.-.- 53785,40504,46197 Cytochrome P450 90A1 (EC 1.14.-.-),AT5G05690 protein (Cytochrome P450 superfamily protein),Cytochrome P450 superfamily protein integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; anther wall tapetum cell differentiation [GO:0048657]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; pollen exine formation [GO:0010584]; positive regulation of flower development [GO:0009911]; response to UV-B [GO:0010224]; sterol metabolic process [GO:0016125],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2166439; AT5G05690 cytochrome P450 Cytochrome P450 90A3 (EC 1.14.99.-) (Protein CONSTITUTIVE PHOTOMORPHOGENESIS AND DWARFISM 1) (OsCPD1) (Steroid 23-alpha-hydroxylase),Cytochrome P450 90A4 (EC 1.14.99.-) (Protein CONSTITUTIVE PHOTOMORPHOGENESIS AND DWARFISM 2) (OsCPD2) (Steroid 23-alpha-hydroxylase) Q2RAP4,Q5CCK1 C90A3_ORYSJ,C90A4_ORYSJ CYP90A3 CPD1 Os11g0143200 LOC_Os11g04710 OsJ_32928,CYP90A4 CPD2 Os12g0139300 LOC_Os12g04480 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|Ref.7}. FUNCTION: Catalyzes the C23-alpha-hydroxylation step in brassinosteroid biosynthesis. Converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6-oxidation pathway and cathasterone to teasterone in the early C6-oxidation pathway of brassinolide biosynthesis. {ECO:0000305|Ref.7}. ENOG411DU3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle Os03g0820700 protein (Zinc knuckle family protein, expressed) Q10BE5 Q10BE5_ORYSJ LOC_Os03g60600 Os03g0820700 OSNPB_030820700 ENOG411DU3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os04g0682400 protein A0A0P0WGS4 A0A0P0WGS4_ORYSJ Os04g0682400 OSNPB_040682400 ENOG411DU3G RPL4 O50061,Q2V4Q4,Q3EDH2 RK4_ARATH,Q2V4Q4_ARATH,Q3EDH2_ARATH 50S ribosomal protein L4, chloroplastic (CL4) (R-protein L4),AT1G07320 protein (Ribosomal protein L4),Ribosomal protein L4 Embryo defective; Globular-D. Meinke-2008 FUNCTION: This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation. {ECO:0000250}. 30559,30142,30415 50S ribosomal protein L4, chloroplastic (CL4) (R-protein L4),AT1G07320 protein (Ribosomal protein L4),Ribosomal protein L4 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleus [GO:0005634]; plastid large ribosomal subunit [GO:0000311]; thylakoid [GO:0009579]; poly(U) RNA binding [GO:0008266]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2025107; AT1G07320 Ribosomal protein L4 50S ribosomal protein L4, chloroplast, putative, expressed (Os03g0265400 protein) (cDNA clone:006-203-A01, full insert sequence) (cDNA clone:006-205-F06, full insert sequence) (cDNA clone:006-308-D01, full insert sequence) Q10NM5 Q10NM5_ORYSJ Os03g0265400 LOC_Os03g15870 Os03g0265400 OSNPB_030265400 ENOG411DU3A STY46 F4JTP5,A0A1P8B466,A0A1P8B481 STY46_ARATH,A0A1P8B466_ARATH,A0A1P8B481_ARATH Serine/threonine-protein kinase STY46 (EC 2.7.11.1) (Serine/threonine/tyrosine-protein kinase 46),ACT-like protein tyrosine kinase family protein DISRUPTION PHENOTYPE: Retarded growth. {ECO:0000269|PubMed:21799034}. FUNCTION: Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides). May be part of a cytosolic regulatory network involved in chloroplast protein import. Does not phosphorylate mitochondrion precursor proteins. Specific for ATP and does not utilize other NTPs (PubMed:17090544, PubMed:16429265). Plays a role in chloroplast biogenesis and differentiation in cotyledons, possibly through phosphorylation of chloroplast preproteins (PubMed:21799034). {ECO:0000269|PubMed:17090544, ECO:0000269|PubMed:21799034}. 2.7.11.1 64811,62629,57194 Serine/threonine-protein kinase STY46 (EC 2.7.11.1) (Serine/threonine/tyrosine-protein kinase 46),ACT-like protein tyrosine kinase family protein cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; chloroplast organization [GO:0009658]; intracellular signal transduction [GO:0035556],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2121154; AT4G38470 kinase family Os09g0544300 protein (Putative serine/threonine-protein kinase ctr1) (cDNA clone:J023139F03, full insert sequence),EDR1-like (Os06g0724900 protein) (cDNA clone:J033068K18, full insert sequence) Q7XXN2,Q5Z986 Q7XXN2_ORYSJ,Q5Z986_ORYSJ Os09g0544300 OSNPB_090544300 P0705E11.7,Os06g0724900 OsJ_22701 OSNPB_060724900 P0535F09.40 P0548E04.7 ENOG411DU3B Q9T0K8 Q9T0K8_ARATH At4g13370 (Serine/arginine repetitive matrix protein, putative (DUF936)) (Uncharacterized protein AT4g13370) (Uncharacterized protein At4g13370/T9E8_110) 73432 At4g13370 (Serine/arginine repetitive matrix protein, putative (DUF936)) (Uncharacterized protein AT4g13370) (Uncharacterized protein At4g13370/T9E8_110) cytosol [GO:0005829] locus:2142060; AT4G13370 expressed protein Expressed protein (Os11g0120200 protein),Expressed protein (Os12g0120000 protein) (cDNA clone:001-123-C07, full insert sequence) Q2RB96,Q2QYH0 Q2RB96_ORYSJ,Q2QYH0_ORYSJ LOC_Os11g02740 Os11g0120200 OsJ_32750 OSNPB_110120200,LOC_Os12g02710 Os12g0120000 OSNPB_120120000 ENOG411DU3C CJD1 Q93WG3 Q93WG3_ARATH Chloroplast J-like domain 1 (Uncharacterized protein At1g08640) 32902 Chloroplast J-like domain 1 (Uncharacterized protein At1g08640) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; fatty acid metabolic process [GO:0006631] locus:2025660; AT1G08640 Protein of unknown function (DUF3353) DnaJ domain containing protein, expressed (Os10g0478100 protein) (cDNA clone:006-209-D05, full insert sequence) (cDNA clone:J023116K03, full insert sequence),Os08g0127600 protein (cDNA clone:J013149L10, full insert sequence) Q337K3,Q6ZK49 Q337K3_ORYSJ,Q6ZK49_ORYSJ Os10g0478100 LOC_Os10g33790 Os10g0478100 OSNPB_100478100,Os08g0127600 OJ1163_G08.28 OSNPB_080127600 ENOG411DU3X ISPH Q94B35 ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic (EC 1.17.7.4) (Protein CHLOROPLAST BIOGENESIS 6) DISRUPTION PHENOTYPE: Albino phenotype and seedling lethal when homozygous. The phenotype is caused by an early arrest in chloroplast differentiation. {ECO:0000269|PubMed:15659625, ECO:0000269|PubMed:15863698}. Albino seedling,Plants with albino phenotype which exhibit purple-tinted phenotype superimposed on the albino phenotype when grown sucrose-containing medium. ispH-1 plants develop normal roots rosette leaves and inflorescences. Albino seeds and seedlings-P. Leon-2004 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development. {ECO:0000269|PubMed:15659625, ECO:0000269|PubMed:15863698}. PATHWAY: Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from (2E)-4-hydroxy-3-methylbutenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 6/6. ARA:AT4G34350-MONOMER-9581;MetaCyc:AT4G34350-MONOMER-9581; 1.17.7.4 52781 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic (EC 1.17.7.4) (Protein CHLOROPLAST BIOGENESIS 6) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 3 iron, 4 sulfur cluster binding [GO:0051538]; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [GO:0051745]; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [GO:0046429]; metal ion binding [GO:0046872]; dimethylallyl diphosphate biosynthetic process [GO:0050992]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:15863698}. locus:2116164; AT4G34350 4-hydroxy-3-methylbut-2-enyl diphosphate 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic (EC 1.17.7.4),Os03g0732000 protein Q6AVG6,Q0DNV6 ISPH_ORYSJ,Q0DNV6_ORYSJ ISPH Os03g0731900 LOC_Os03g52170 OSJNBa0079G12.18,Os03g0732000 OSNPB_030732000 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development (By similarity). {ECO:0000250}. ENOG411DU3Y Q940T0 Q940T0_ARATH At1g79420/T8K14_16 (C-type mannose receptor (DUF620)) 45966 At1g79420/T8K14_16 (C-type mannose receptor (DUF620)) locus:2206425; AT1G79420 Protein of unknown function (DUF620) NA NA NA NA NA NA NA ENOG411DU3Z emb1579 A0A1P8AXY9,F4IS91 A0A1P8AXY9_ARATH,F4IS91_ARATH ATP/GTP-binding protein family Embryo defective; Cotyledon-D. Meinke-2002 R-ATH-3371453;R-ATH-72163; 150641,150913 ATP/GTP-binding protein family calcium ion binding [GO:0005509]; regulation of transcription, DNA-templated [GO:0006355],cytosol [GO:0005829]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; regulation of transcription, DNA-templated [GO:0006355]; sodium ion homeostasis [GO:0055078] locus:2056881; AT2G03150 Inherit from KOG: cell division cycle and apoptosis regulator 1 NA NA NA NA NA NA NA ENOG411DU3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os04g0324400 protein,Os04g0313900 protein A0A0P0W8M4,A0A0P0W937 A0A0P0W8M4_ORYSJ,A0A0P0W937_ORYSJ Os04g0324400 OSNPB_040324400,Os04g0313900 OSNPB_040313900 ENOG411DU3U HRD3B,HRD3A Q9C6B6,Q9LM25 HRD3B_ARATH,HRD3A_ARATH ERAD-associated E3 ubiquitin-protein ligase component HRD3B (AtSel1B),ERAD-associated E3 ubiquitin-protein ligase component HRD3A (AtSel1A) (Protein EMS-MUTAGENIZED BRI1 SUPPRESSOR 5) Endoplasmic reticulum (ER)-associated degradation process is blocked and the unfolded protein response is activated in ebs5-5 mutant. FUNCTION: May be involved in the endoplasmic reticulum (ER) quality control system called ER-associated degradation (ERAD). {ECO:0000250|UniProtKB:Q9LM25}.,FUNCTION: Component of the endoplasmic reticulum (ER) quality control system called ER-associated degradation (ERAD) and involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Functions as an ERAD substrate-recruiting factor that recognizes misfolded proteins for the HRD1 E3 ubiquitin ligase complex. Targets the misfolded LRR receptor kinase BRI1. {ECO:0000269|PubMed:21187394}. R-ATH-382556;R-ATH-5358346;R-ATH-901032; 67761,75942 ERAD-associated E3 ubiquitin-protein ligase component HRD3B (AtSel1B),ERAD-associated E3 ubiquitin-protein ligase component HRD3A (AtSel1A) (Protein EMS-MUTAGENIZED BRI1 SUPPRESSOR 5) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; hyperosmotic salinity response [GO:0042538]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2035047;,locus:2014109; AT1G73570,AT1G18260 Protein sel-1 homolog ERAD-associated E3 ubiquitin-protein ligase component HRD3 (OsSel1) Q10NT7 HRD3_ORYSJ HRD3 Os03g0259300 LOC_Os03g15350 FUNCTION: Component of the endoplasmic reticulum (ER) quality control system called ER-associated degradation (ERAD) and involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Functions as an ERAD substrate-recruiting factor that recognizes misfolded proteins for the HRD1 E3 ubiquitin ligase complex. {ECO:0000250|UniProtKB:Q9LM25}. ENOG411DU3V NPF7.1,NPF7.3 Q3E9B5,Q9LQL2 PTR51_ARATH,PTR14_ARATH Protein NRT1/ PTR FAMILY 7.1 (AtNPF7.1),Protein NRT1/ PTR FAMILY 7.3 (AtNPF7.3) (Nitrate transporter 1.5) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Lower nitrate concentration in xylem sap. Decreased long-distance root-to-shoot transport of nitrate but not of sulfate or phosphate. {ECO:0000269|PubMed:18780802, ECO:0000269|PubMed:20501909}. Defective in xylem transport of nitrate from root to shoot. Morphologically WT when grown on soil. When grown on plates roots were shorter than WT Reduced nitrate transport from root to shoot-T. Ysay-2008 FUNCTION: Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport. {ECO:0000269|PubMed:18780802}. R-ATH-427975;R-ATH-6798695; 67463,68699 Protein NRT1/ PTR FAMILY 7.1 (AtNPF7.1),Protein NRT1/ PTR FAMILY 7.3 (AtNPF7.3) (Nitrate transporter 1.5) integral component of membrane [GO:0016021]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; symporter activity [GO:0015293]; leaf senescence [GO:0010150]; nitrate transport [GO:0015706]; potassium ion homeostasis [GO:0055075]; response to nitrate [GO:0010167] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: High expression in roots. Barely detected in shoots. Expressed in root pericycle cells close to the xylem. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:18780802, ECO:0000269|PubMed:20501909}. locus:2183194;,locus:2033776; AT5G19640,AT1G32450 Nitrate transporter Os02g0689900 protein (Putative peptide transporter),Os02g0716800 protein (Peptide transporter-like) Q6ZGY3,Q6ZGW7 Q6ZGY3_ORYSJ,Q6ZGW7_ORYSJ Os02g0689900 Os02g0689900 OJ1743_B12.30 OsJ_07990 OSNPB_020689900,Os02g0716800 Os02g0716800 OJ1191_G08.33 OJ2056_H01.5 OsJ_08148 OSNPB_020716800 ENOG411DU3W F22G10.1 Q9C8N0,F4HTC0 Q9C8N0_ARATH,F4HTC0_ARATH K+-H+ exchange-like protein (Uncharacterized protein At1g53760) (Uncharacterized protein F22G10.1),K+-H+ exchange-like protein 30607,24032 K+-H+ exchange-like protein (Uncharacterized protein At1g53760) (Uncharacterized protein F22G10.1),K+-H+ exchange-like protein integral component of mitochondrial inner membrane [GO:0031305]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; potassium ion transport [GO:0006813]; proton transport [GO:0015992],integral component of membrane [GO:0016021] locus:2024812; AT1G53760 Pfam:DUF2343 Os02g0152600 protein Q67IU3 Q67IU3_ORYSJ Os02g0152600 OsJ_05409 OSNPB_020152600 P0463E12.7 ENOG411DU3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA START domain NA NA NA NA NA NA NA ENOG411DU3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os11g0180900 protein B9G9P9 B9G9P9_ORYSJ Os11g0180900 OsJ_33189 OSNPB_110180900 ENOG411DU3R MAA21.3 Q8RXY0,A0A1I9LNS1,A0A1I9LNR8,A0A1I9LNR3,A0A1I9LNR7,A0A1I9LNR5,A0A1I9LNR2 Y3333_ARATH,A0A1I9LNS1_ARATH,A0A1I9LNR8_ARATH,A0A1I9LNR3_ARATH,A0A1I9LNR7_ARATH,A0A1I9LNR5_ARATH,A0A1I9LNR2_ARATH Probable inactive protein kinase At3g63330,Kinase superfamily protein,Kinase superfamily protein (Fragment) 42655,111562,112647,42652,115882,95117,115965 Probable inactive protein kinase At3g63330,Kinase superfamily protein,Kinase superfamily protein (Fragment) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; regulation of gene expression [GO:0010468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine phosphatase activity [GO:0004722],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] AT3G63330 Protein kinase domain Putative protein phosphatase 2C 76 (OsPP2C76) (EC 3.1.3.16),Os01g0728400 protein (cDNA clone:J013001L21, full insert sequence),Os11g0586100 protein (Fragment),Os07g0228000 protein A3CCP9,B7EAF7,A0A0P0Y424,A0A0P0X4E4 P2C76_ORYSJ,B7EAF7_ORYSJ,A0A0P0Y424_ORYSJ,A0A0P0X4E4_ORYSJ Os11g0586001 LOC_Os11g37540,Os01g0728400 OsJ_03333 OSNPB_010728400,Os11g0586100 OSNPB_110586100,Os07g0228000 OSNPB_070228000 ENOG411E2EY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHEU Q9FHX8,Q9SGW6 MDA3_ARATH,Q9SGW6_ARATH Mediator-associated protein 3 (DEK-domain containing protein At5g42060) (KELP-like protein),At1g64490 (DEK, chromatin associated protein) (F1N19.6) (Uncharacterized protein At1g64490) 10702,14188 Mediator-associated protein 3 (DEK-domain containing protein At5g42060) (KELP-like protein),At1g64490 (DEK, chromatin associated protein) (F1N19.6) (Uncharacterized protein At1g64490) mediator complex [GO:0016592]; nucleus [GO:0005634]; transcription factor complex [GO:0005667]; transcription coactivator activity [GO:0003713]; positive regulation of transcription initiation from RNA polymerase II promoter [GO:0060261],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; transcription coactivator activity [GO:0003713]; positive regulation of transcription initiation from RNA polymerase II promoter [GO:0060261] locus:2165780;,locus:2019469; AT5G42060,AT1G64490 DEK C terminal domain NA NA NA NA NA NA NA ENOG411EHEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os06g0680100 protein,Os01g0685100 protein (Fragment),Os01g0352000 protein,Os01g0891650 protein,Os06g0681050 protein,Os02g0552500 protein,Os12g0123400 protein,Os01g0149300 protein,Os10g0457800 protein,Os02g0155201 protein,Os05g0326900 protein A3BEP0,A0A0P0V6P3,A0A0P0V295,A0A0P0VBG1,A0A0P0X0A7,A0A0P0VKF4,A0A0P0Y6U2,A0A0N7KCC1,A0A0N7KRW4,A0A0P0VEX3,A0A0N7KKJ6 A3BEP0_ORYSJ,A0A0P0V6P3_ORYSJ,A0A0P0V295_ORYSJ,A0A0P0VBG1_ORYSJ,A0A0P0X0A7_ORYSJ,A0A0P0VKF4_ORYSJ,A0A0P0Y6U2_ORYSJ,A0A0N7KCC1_ORYSJ,A0A0N7KRW4_ORYSJ,A0A0P0VEX3_ORYSJ,A0A0N7KKJ6_ORYSJ Os06g0680100 OsJ_22373 OSNPB_060680100,Os01g0685100 OSNPB_010685100,Os01g0352000 OSNPB_010352000,Os01g0891650 OSNPB_010891650,Os06g0681050 OSNPB_060681050,Os02g0552500 OSNPB_020552500,Os12g0123400 OSNPB_120123400,Os01g0149300 OSNPB_010149300,Os10g0457800 OSNPB_100457800,Os02g0155201 OSNPB_020155201,Os05g0326900 OSNPB_050326900 ENOG411EHER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411EHEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein DEHYDRATION-INDUCED 19 homolog NA NA NA NA NA NA NA ENOG411EHEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: chromosome 5 open reading frame 44 Os10g0498800 protein (Fragment) Q0IWN0 Q0IWN0_ORYSJ Os10g0498800 OSNPB_100498800 ENOG411EHEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3741) NA NA NA NA NA NA NA ENOG411EDBU CYCT1-2,CYCT1:2 Q56YF8,A0A1P8B7P7 CCT12_ARATH,A0A1P8B7P7_ARATH Cyclin-T1-2 (CycT1;2),Cyclin family protein R-ATH-674695;R-ATH-6796648; 51813,43491 Cyclin-T1-2 (CycT1;2),Cyclin family protein cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944],nucleus [GO:0005634] locus:2122940; AT4G19560 Cyclin N-terminal domain NA NA NA NA NA NA NA ENOG411EDBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os02g0291600 protein (Putative GDSL-lipase) (cDNA clone:J033070K23, full insert sequence),Os02g0292600 protein (Putative GDSL-lipase) Q6K868,Q6K861 Q6K868_ORYSJ,Q6K861_ORYSJ Os02g0291600 OJ1124_E11.20 OSNPB_020291600,Os02g0292600 OJ1057_D08.9 OJ1124_E11.30 OSNPB_020292600 ENOG411EDBW CYP71B8,CYP71B21,CYP71B5,CYP71B22,CYP71B31,CYP71B38,CYP71B32 P58048,Q9LTM2,O65784,Q9LTM1,Q9SCN2,Q9LXM3,F4J9C1 C71B8_ARATH,C71BL_ARATH,C71B5_ARATH,C71BM_ARATH,C71BU_ARATH,C71BZ_ARATH,F4J9C1_ARATH Cytochrome P450 71B8 (EC 1.14.-.-) (Cytochrome P450, family 71, subfamily B, polypeptide 8),Cytochrome P450 71B21 (EC 1.14.-.-),Cytochrome P450 71B5 (EC 1.14.-.-),Cytochrome P450 71B22 (EC 1.14.-.-),Cytochrome P450 71B31 (EC 1.14.-.-),Cytochrome P450 71B38 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 32 ARA:AT5G35715-MONOMER;,ARA:AT3G26190-MONOMER;,ARA:AT3G53280-MONOMER;,ARA:AT3G26200-MONOMER;,ARA:AT3G53300-MONOMER;,ARA:AT3G44250-MONOMER; 1.14.-.- 57970,56984,56374,57033,57143,56996,38268 Cytochrome P450 71B8 (EC 1.14.-.-) (Cytochrome P450, family 71, subfamily B, polypeptide 8),Cytochrome P450 71B21 (EC 1.14.-.-),Cytochrome P450 71B5 (EC 1.14.-.-),Cytochrome P450 71B22 (EC 1.14.-.-),Cytochrome P450 71B31 (EC 1.14.-.-),Cytochrome P450 71B38 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 32 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2093541;,locus:2102003;,locus:2093521;,locus:2102033;,locus:504955610; AT5G35715,AT3G26190,AT3G53280,AT3G26200,AT3G53300,AT3G44250,AT3G53305 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EDBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EDBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EDBR OSB3,OSB2 Q8GWJ4,Q8GXH3,F4KBP3 OSB3_ARATH,OSB2_ARATH,F4KBP3_ARATH Protein OSB3, chloroplastic/mitochondrial (Organellar single-stranded DNA-binding protein 3),Protein OSB2, chloroplastic (Organellar single-stranded DNA-binding protein 2) (Protein FLORAL ABSCISSION ASSOCIATED) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 9),Organellar single-stranded DNA binding protein 3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17189341}. FUNCTION: Binds single-stranded DNA. {ECO:0000250}.,FUNCTION: Binds preferentially single-stranded DNA. Does not bind to RNA. {ECO:0000269|PubMed:17189341}. 49900,41729,50128 Protein OSB3, chloroplastic/mitochondrial (Organellar single-stranded DNA-binding protein 3),Protein OSB2, chloroplastic (Organellar single-stranded DNA-binding protein 2) (Protein FLORAL ABSCISSION ASSOCIATED) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 9),Organellar single-stranded DNA binding protein 3 chloroplast [GO:0009507]; mitochondrion [GO:0005739]; single-stranded DNA binding [GO:0003697],chloroplast [GO:0009507]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; single-stranded DNA binding [GO:0003697] TISSUE SPECIFICITY: Expressed primarily in the female gametophyte and in the floral abscission zone. {ECO:0000269|PubMed:16990374, ECO:0000269|PubMed:17189341}.,TISSUE SPECIFICITY: Expressed in the floral abscission zone. {ECO:0000269|PubMed:16990374}. locus:2119767;,locus:505006672; AT5G44785,AT4G20010 organellar single-stranded dna binding protein 3 NA NA NA NA NA NA NA ENOG411EDBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger Os08g0246800 protein (Fragment),Os05g0475600 protein A0A0P0XED5,A0A0P0WNM9 A0A0P0XED5_ORYSJ,A0A0P0WNM9_ORYSJ Os08g0246800 OSNPB_080246800,Os05g0475600 OSNPB_050475600 ENOG411EDBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0626600 protein,Os04g0626700 protein A0A0P0WF19,A0A0P0WF72 A0A0P0WF19_ORYSJ,A0A0P0WF72_ORYSJ Os04g0626600 OSNPB_040626600,Os04g0626700 OSNPB_040626700 ENOG411EDBZ RLM1B,F13N6.13 Q9CAK1,Q9CAK0,A0A1P8AQP9,Q9C7W9,Q9CAE0,F4I3Q8,A0A1P8AN87,A0A1P8AQB1,A0A1P8AQN5,A0A1P8AQ72,F4I3S8,F4I552,F4I3S7 RLM1B_ARATH,Q9CAK0_ARATH,A0A1P8AQP9_ARATH,Q9C7W9_ARATH,Q9CAE0_ARATH,F4I3Q8_ARATH,A0A1P8AN87_ARATH,A0A1P8AQB1_ARATH,A0A1P8AQN5_ARATH,A0A1P8AQ72_ARATH,F4I3S8_ARATH,F4I552_ARATH,F4I3S7_ARATH Disease resistance protein RML1B (Protein RESISTANCE TO LEPTOSPHAERIA MACULANS 1B),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 28811-33581),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein, putative),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 17840-13447) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are susceptible to the pathogen Leptosphaeria maculans. {ECO:0000269|PubMed:16623885, ECO:0000269|PubMed:19220763}. Reduced resistance to Leptosphaeria maculans causal agent of blackleg disease. Susceptible to Leptosphaeria maculans-C. Dixelius-2006 FUNCTION: TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Leptosphaeria maculans (blackleg disease). {ECO:0000269|PubMed:16623885, ECO:0000269|PubMed:19220763}. 115415,117607,107478,101813,128069,109096,86698,83306,111803,104415,115433,126890,113480 Disease resistance protein RML1B (Protein RESISTANCE TO LEPTOSPHAERIA MACULANS 1B),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 28811-33581),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein, putative),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein; 17840-13447) ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to fungus [GO:0050832]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531],ADP binding [GO:0043531] locus:2195468;,locus:2195478;,locus:2026624;,locus:2823395;,locus:2010733; AT1G63880,AT1G63870,AT1G56520,AT1G63750,AT1G63860 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EDBE LECRK32,LECRK31 Q9ZW11,Q9ZW09,Q9LNW6,Q4PT39 LRK32_ARATH,LRK31_ARATH,Q9LNW6_ARATH,Q4PT39_ARATH Putative inactive L-type lectin-domain containing receptor kinase III.2 (LecRK-III.2),Probable inactive L-type lectin-domain containing receptor kinase III.1 (LecRK-III.1),Concanavalin A-like lectin family protein (F22G5.19),Concanavalin A-like lectin family protein (Legume lectin family protein) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:25083911}. 68216,68789,35568,28367 Putative inactive L-type lectin-domain containing receptor kinase III.2 (LecRK-III.2),Probable inactive L-type lectin-domain containing receptor kinase III.1 (LecRK-III.1),Concanavalin A-like lectin family protein (F22G5.19),Concanavalin A-like lectin family protein (Legume lectin family protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; defense response to oomycetes [GO:0002229],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672],carbohydrate binding [GO:0030246],anchored component of membrane [GO:0031225]; carbohydrate binding [GO:0030246] locus:2043127;,locus:2043162;,locus:2025037; AT2G29250,AT2G29220,AT1G07460 Legume lectin domain NA NA NA NA NA NA NA ENOG411EDBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDBG AHL4 Q9FHM5 AHL4_ARATH AT-hook motif nuclear-localized protein 4 DISRUPTION PHENOTYPE: Misspecification of tissue boundaries between the xylem and procambium. {ECO:0000269|PubMed:23335615}. FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Acts redundantly with AHL3 to regulate the formation of tissue boundary between the xylem and procambium in the root meristem. Cell-to-cell movement of AHL4 from the procambium to the xylem is critical for its function in root vascular patterning (PubMed:23335615). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:23335615}. 44594 AT-hook motif nuclear-localized protein 4 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein self-association [GO:0043621]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051]; xylem development [GO:0010089] TISSUE SPECIFICITY: Predominantly expressed in the stele of the root meristem with a specificity to the procambium. {ECO:0000269|PubMed:23335615}. locus:2153142; AT5G51590 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411EDBF Q9LTU7 Q9LTU7_ARATH Kinesin-like protein (DUF868) 32297 Kinesin-like protein (DUF868) locus:504955764; AT3G13229 Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411EDBA CELLULOSE SYNTHASE LIKE D1 Q9FXF4 Q9FXF4_ARATH At1g29770 (F1N18.17 protein) (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) 31726 At1g29770 (F1N18.17 protein) (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) integral component of membrane [GO:0016021]; phosphoprotein phosphatase activity [GO:0004721] locus:2019332; AT1G29770 CPDc NA NA NA NA NA NA NA ENOG411EDBC B3GALT5 Q9LM60 B3GT5_ARATH Probable beta-1,3-galactosyltransferase 5 (EC 2.4.1.-) FUNCTION: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.- 45201 Probable beta-1,3-galactosyltransferase 5 (EC 2.4.1.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486] locus:505006138; AT1G22015 Galactosyltransferase NA NA NA NA NA NA NA ENOG411EDBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0035M09.9 protein (Os04g0606500 protein) (cDNA clone:J013145H18, full insert sequence),Os08g0230200 protein (Fragment),Os08g0230100 protein (Fragment) Q7X8W5,A0A0P0XDG3,A0A0P0XD66 Q7X8W5_ORYSJ,A0A0P0XDG3_ORYSJ,A0A0P0XD66_ORYSJ Os04g0606500 OSJNBa0035M09.9 OSNPB_040606500,Os08g0230200 OSNPB_080230200,Os08g0230100 OSNPB_080230100 ENOG411EDBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vta1 like Os01g0533100 protein A0A0P0V3M1 A0A0P0V3M1_ORYSJ Os01g0533100 OSNPB_010533100 ENOG411EDBI HEMB2 Q94LA4 HEM22_ARATH Probable delta-aminolevulinic acid dehydratase 2, chloroplastic (ALADH2) (EC 4.2.1.24) (Porphobilinogen synthase) FUNCTION: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen (By similarity). {ECO:0000250}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT1G44318-MONOMER; R-ATH-189451;R-ATH-6798695; 4.2.1.24 44878 Probable delta-aminolevulinic acid dehydratase 2, chloroplastic (ALADH2) (EC 4.2.1.24) (Porphobilinogen synthase) chloroplast [GO:0009507]; cytosol [GO:0005829]; porphobilinogen synthase activity [GO:0004655]; zinc ion binding [GO:0008270]; chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782] locus:2823624; AT1G44318 ALAD NA NA NA NA NA NA NA ENOG411EDBH AGAMOUS-like 64 Q5BIV4,Q67XF2,A0A1P8AUC7 Q5BIV4_ARATH,Q67XF2_ARATH,A0A1P8AUC7_ARATH At1g23470 (Peptidase S24/S26A/S26B/S26C family protein),Peptidase S24/S26A/S26B/S26C family protein (Uncharacterized protein At1g29960),Peptidase S24/S26A/S26B/S26C family protein 18856,18837,13670 At1g23470 (Peptidase S24/S26A/S26B/S26C family protein),Peptidase S24/S26A/S26B/S26C family protein (Uncharacterized protein At1g29960),Peptidase S24/S26A/S26B/S26C family protein membrane [GO:0016020]; serine-type peptidase activity [GO:0008236],integral component of membrane [GO:0016021]; mitochondrial inner membrane peptidase complex [GO:0042720]; serine-type peptidase activity [GO:0008236]; mitochondrial respiratory chain complex assembly [GO:0033108]; protein processing involved in protein targeting to mitochondrion [GO:0006627]; signal peptide processing [GO:0006465] locus:1006230730;,locus:2019357; AT1G23465,AT1G29960 mitochondrial inner membrane protease subunit NA NA NA NA NA NA NA ENOG411EDBK BGAL2 Q9LFA6,A0A1I9LM56 BGAL2_ARATH,A0A1I9LM56_ARATH Beta-galactosidase 2 (Lactase 2) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) ARA:AT3G52840-MONOMER; 3.2.1.23; 3.2.1.23 82015,88406 Beta-galactosidase 2 (Lactase 2) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975],integral component of membrane [GO:0016021]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Ubiquitous, with higher expression levels in roots and siliques. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:17466346}. locus:2085131; AT3G52840 Beta-galactosidase NA NA NA NA NA NA NA ENOG411EDBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Proto-chlorophyllide reductase 57 kD subunit NA NA NA NA NA NA NA ENOG411EDB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase HSL2-like Os02g0228000 protein,Os02g0227500 protein A0A0P0VGQ3,A0A0P0VGR5 A0A0P0VGQ3_ORYSJ,A0A0P0VGR5_ORYSJ Os02g0228000 OSNPB_020228000,Os02g0227500 OSNPB_020227500 ENOG411EDB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S1 NA NA NA NA NA NA NA ENOG411EDB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA methyltransferase NA NA NA NA NA NA NA ENOG411EDB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411EDB0 Q8LAR7,Q8LED0 DDPS8_ARATH,DDPS7_ARATH Dehydrodolichyl diphosphate synthase 8 (Dedol-PP synthase 8) (EC 2.5.1.-),Dehydrodolichyl diphosphate synthase 7 (Dedol-PP synthase 7) (EC 2.5.1.-) FUNCTION: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. ARA:AT5G60510-MONOMER;,ARA:AT5G60500-MONOMER; 2.5.1.- 31037,30901 Dehydrodolichyl diphosphate synthase 8 (Dedol-PP synthase 8) (EC 2.5.1.-),Dehydrodolichyl diphosphate synthase 7 (Dedol-PP synthase 7) (EC 2.5.1.-) polyprenyltransferase activity [GO:0002094]; polyprenol biosynthetic process [GO:0016094]; protein glycosylation [GO:0006486],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; polyprenyltransferase activity [GO:0002094]; polyprenol biosynthetic process [GO:0016094]; protein glycosylation [GO:0006486] locus:2175183;,locus:2175168; AT5G60510,AT5G60500 Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein (By similarity) NA NA NA NA NA NA NA ENOG411EDB3 ZHD7 Q9SVL0 ZHD7_ARATH Zinc-finger homeodomain protein 7 (AtZHD7) (Homeobox protein 28) (AtHB-28) FUNCTION: Putative transcription factor. 28658 Zinc-finger homeodomain protein 7 (AtZHD7) (Homeobox protein 28) (AtHB-28) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. locus:2077957; AT3G50890 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411EDB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated NA NA NA NA NA NA NA ENOG411EDB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF630) Os07g0686500 protein (Fragment) Q0D3H5 Q0D3H5_ORYSJ Os07g0686500 Os07g0686500 OSNPB_070686500 ENOG411EDB8 ECT9 Q500V8,A0A1P8AUC1,A0A1P8AU98 Q500V8_ARATH,A0A1P8AUC1_ARATH,A0A1P8AU98_ARATH At1g27960 (Evolutionarily conserved C-terminal region 9),Evolutionarily conserved C-terminal region 9 61277,48992,53332 At1g27960 (Evolutionarily conserved C-terminal region 9),Evolutionarily conserved C-terminal region 9 RNA binding [GO:0003723] locus:2010494; AT1G27960 evolutionarily conserved C-terminal region 9 NA NA NA NA NA NA NA ENOG411DUQ1 A2RVM4,A0A1P8BFV0 A2RVM4_ARATH,A0A1P8BFV0_ARATH At5g17570 (TatD related DNase),TatD related DNase 35575,35181 At5g17570 (TatD related DNase),TatD related DNase hydrolase activity, acting on ester bonds [GO:0016788] locus:2151406; AT5G17570 TatD related DNase OSJNBa0020J04.13 protein (Os04g0577500 protein) (cDNA clone:001-038-H04, full insert sequence) (cDNA clone:006-310-G06, full insert sequence) Q7XUG9 Q7XUG9_ORYSJ Os04g0577500 Os04g0577500 OsJ_15872 OSJNBa0020J04.13 OSNPB_040577500 ENOG411EDUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inosine-uridine preferring nucleoside hydrolase NA NA NA NA NA NA NA ENOG411E5T6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411EAQJ LECRK15 Q9M1G4 LRK15_ARATH Probable L-type lectin-domain containing receptor kinase I.5 (LecRK-I.5) (EC 2.7.11.1) 2.7.11.1 74378 Probable L-type lectin-domain containing receptor kinase I.5 (LecRK-I.5) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674] locus:2085577; AT3G45430 Legume lectin domain NA NA NA NA NA NA NA ENOG411EAQD NPF8.5,PTR6 Q93Z20,A0A1P8AP16,A0A1P8AP25 PTR17_ARATH,A0A1P8AP16_ARATH,A0A1P8AP25_ARATH Protein NRT1/ PTR FAMILY 8.5 (AtNPF8.5) (Peptide transporter PTR6),Major facilitator superfamily protein R-ATH-427975;R-ATH-6798695; 3.6.3.43; 65496,70594,69019 Protein NRT1/ PTR FAMILY 8.5 (AtNPF8.5) (Peptide transporter PTR6),Major facilitator superfamily protein integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in shoots, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17481610}. locus:2018032; AT1G62200 POT family NA NA NA NA NA NA NA ENOG411EAQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitinase class I NA NA NA NA NA NA NA ENOG411EAQA pEARLI4 Q9LFP2,Q9SKR5,A0A1P8AYN4,A0A1P8AYH5 Q9LFP2_ARATH,Q9SKR5_ARATH,A0A1P8AYN4_ARATH,A0A1P8AYH5_ARATH Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein F2I11_30),PEARLI 4 protein (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein 27618,84863,76711,80908 Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein F2I11_30),PEARLI 4 protein (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein chromatin binding [GO:0003682]; mitotic sister chromatid cohesion [GO:0007064]; regulation of gene expression [GO:0010468] locus:2147937;,locus:2047122; AT5G11140,AT2G20960 Arabidopsis phospholipase-like protein (PEARLI 4) NA NA NA NA NA NA NA ENOG411EAQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EHE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant phosphoribosyltransferase C-terminal NA NA NA NA NA NA NA ENOG411EAQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF894 NA NA NA NA NA NA NA ENOG411E5TV BOLA2 Q9FIC3 BOLA2_ARATH Protein BOLA2 FUNCTION: May act either alone or in interaction with glutaredoxin as a redox-regulated transcriptional regulator, or as a factor regulating Fe-S cluster biogenesis (Probable). The GRXS17-BOLA2 heterodimer binds a labile, oxygen sensitive iron-sulfur cluster (PubMed:24714563). {ECO:0000269|PubMed:24714563, ECO:0000305|PubMed:24203231}. 10375 Protein BOLA2 cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; response to iron ion [GO:0010039]; response to oxidative stress [GO:0006979] locus:2178143; AT5G09830 bolA-like protein Os01g0866600 protein (Fragment) A0A0P0VAX3 A0A0P0VAX3_ORYSJ Os01g0866600 OSNPB_010866600 ENOG411E5TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: domain protein NA NA NA NA NA NA NA ENOG411E5TA Q67ZF8 Q67ZF8_ARATH CCT motif family protein (Uncharacterized protein At1g63820) 33617 CCT motif family protein (Uncharacterized protein At1g63820) nucleus [GO:0005634]; regulation of flower development [GO:0009909]; response to light stimulus [GO:0009416] locus:2195518; AT1G63820 CCT motif NA NA NA NA NA NA NA ENOG411DUQH Q9STI8 Q9STI8_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g12230) (Uncharacterized protein T4C9.70) 43547 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g12230) (Uncharacterized protein T4C9.70) hydrolase activity [GO:0016787] locus:2139104; AT4G12230 Esterase lipase thioesterase family protein Esterase/lipase/thioesterase family protein, putative, expressed (Os10g0169800 protein) Q33AQ0 Q33AQ0_ORYSJ LOC_Os10g08840 Os10g0169800 OSNPB_100169800 ENOG411DR1Y UVR8 Q9FN03 UVR8_ARATH Ultraviolet-B receptor UVR8 (Protein UV-B RESISTANCE 8) (RCC1 domain-containing protein UVR8) DISRUPTION PHENOTYPE: Hypersensitivity to UV-B. {ECO:0000269|PubMed:12226503}. Sensitive to UV-B light-R. Last-2002 FUNCTION: UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore. {ECO:0000269|PubMed:16330762, ECO:0000269|PubMed:17720867, ECO:0000269|PubMed:18055587, ECO:0000269|PubMed:19165148, ECO:0000269|PubMed:19402876, ECO:0000269|PubMed:21041653, ECO:0000269|PubMed:21395889, ECO:0000269|PubMed:21454788, ECO:0000269|PubMed:22447155, ECO:0000269|PubMed:22988111, ECO:0000269|PubMed:23012433, ECO:0000269|PubMed:23161229}. 47118 Ultraviolet-B receptor UVR8 (Protein UV-B RESISTANCE 8) (RCC1 domain-containing protein UVR8) chromatin [GO:0000785]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; guanyl-nucleotide exchange factor activity [GO:0005085]; photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]; entrainment of circadian clock [GO:0009649]; protein-chromophore linkage [GO:0018298]; response to UV [GO:0009411]; response to UV-B [GO:0010224] locus:2163986; AT5G63860 E3 ubiquitin-protein ligase OSJNBa0006B20.1 protein (Os04g0435700 protein) (cDNA clone:J023123M01, full insert sequence),Os02g0554100 protein (Putative UVB-resistance protein (UVR8)) (cDNA clone:J023039G23, full insert sequence) Q7XRB6,Q69SU2 Q7XRB6_ORYSJ,Q69SU2_ORYSJ Os04g0435700 Os04g0435700 OsJ_14886 OSJNBa0006B20.1 OSNPB_040435700,Os02g0554100 OSNPB_020554100 P0470G10.15 ENOG411DR1P ANL2,ATML1,HDG6,HDG3,HDG2,HDG1,PDF2 Q0WV12,Q8RWU4,Q9FVI6,Q9ZV65,Q94C37,Q9M2E8,Q93V99,Q84JD1,Q9M0J8,B3H6Y4,B3H591,A0A1P8AUV2,F4K6M0 ANL2_ARATH,ATML1_ARATH,FWA_ARATH,HDG3_ARATH,HDG2_ARATH,HDG1_ARATH,PDF2_ARATH,Q84JD1_ARATH,Q9M0J8_ARATH,B3H6Y4_ARATH,B3H591_ARATH,A0A1P8AUV2_ARATH,F4K6M0_ARATH Homeobox-leucine zipper protein ANTHOCYANINLESS 2 (HD-ZIP protein ANL2) (Homeodomain protein AHDP) (Homeodomain transcription factor ANL2),Homeobox-leucine zipper protein MERISTEM L1 (HD-ZIP protein ATML1) (Homeodomain transcription factor ATML1),Homeobox-leucine zipper protein HDG6 (HD-ZIP protein HDG6) (Homeobox protein FWA) (Homeodomain GLABRA 2-like protein 6) (Homeodomain transcription factor HDG6) (Protein HOMEODOMAIN GLABROUS 6),Homeobox-leucine zipper protein HDG3 (HD-ZIP protein HDG3) (Homeodomain GLABRA 2-like protein 3) (Homeodomain transcription factor HDG3) (Protein HOMEODOMAIN GLABROUS 3) (Protein UPCURVED LEAF 1),Homeobox-leucine zipper protein HDG2 (HD-ZIP protein HDG2) (Homeodomain GLABRA 2-like protein 2) (Homeodomain transcription factor HDG2) (Protein HOMEODOMAIN GLABROUS 2),Homeobox-leucine zipper protein HDG1 (HD-ZIP protein HDG1) (Homeodomain GLABRA 2-like protein 1) (Homeodomain transcription factor HDG1) (Protein HOMEODOMAIN GLABROUS 1),Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (HD-ZIP protein PDF2) (Homeodomain transcription factor PDF2),START (StAR-related lipid-transfer) lipid-binding domain-containing protein (Uncharacterized protein At5g07260),Putative homeodomain protein (START (StAR-related lipid-transfer) lipid-binding domain-containing protein),Homeodomain GLABROUS 2,Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein,START (StAR-related lipid-transfer) lipid-binding domain-containing protein DISRUPTION PHENOTYPE: Plants display a strong reduction of anthocyanin content on the adaxial side of rosette leaves, a slight reduction onf the abaxial side, and extra cells between cortical and epidermal layers in roots. {ECO:0000269|PubMed:10402424}. No visible phenotype.,Defects in cotyledon development. Frequently exhibited hyponastic growth of cotyledons.,Complete absence of cytosine methylation in two direct repeated sequences located in FWA 5 promoter and coding regions. This is opposite to the strong methylation observed in wild-type FWA. Hypomethylation activates expression of the gene and leads to late flowering.,late flowering,Defects in cotyledon development. Abnormal root architecture; Low anthocyanin levels in subepidermal cells-M. Koornneef-1999 FUNCTION: Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.,FUNCTION: Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.,FUNCTION: Probable transcription factor involved in the regulation of time of flowering through the photoperiod flowering pathway. May repress FT. {ECO:0000269|PubMed:17189287}.,FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. MISCELLANEOUS: Under epigenetic control. In wild-type plant, FWA is silenced in the sporophyte. The epi-allele fwa mutants (which do not have a change in the nucleotide sequence of FWA) cause a late-flowering phenotype due to ectopic FWA expression in sporophytic tissues. Repression of FWA is dependent on histone H3 'Lys-4' methylation and cytosine methylation which are partly controlled by the lysine-specific demthylase 1 (LSD1) homologs, LDL1 and LDL2. 87194,83490,76253,80070,79424,88167,81530,61689,52336,79210,62715,68179,61125 Homeobox-leucine zipper protein ANTHOCYANINLESS 2 (HD-ZIP protein ANL2) (Homeodomain protein AHDP) (Homeodomain transcription factor ANL2),Homeobox-leucine zipper protein MERISTEM L1 (HD-ZIP protein ATML1) (Homeodomain transcription factor ATML1),Homeobox-leucine zipper protein HDG6 (HD-ZIP protein HDG6) (Homeobox protein FWA) (Homeodomain GLABRA 2-like protein 6) (Homeodomain transcription factor HDG6) (Protein HOMEODOMAIN GLABROUS 6),Homeobox-leucine zipper protein HDG3 (HD-ZIP protein HDG3) (Homeodomain GLABRA 2-like protein 3) (Homeodomain transcription factor HDG3) (Protein HOMEODOMAIN GLABROUS 3) (Protein UPCURVED LEAF 1),Homeobox-leucine zipper protein HDG2 (HD-ZIP protein HDG2) (Homeodomain GLABRA 2-like protein 2) (Homeodomain transcription factor HDG2) (Protein HOMEODOMAIN GLABROUS 2),Homeobox-leucine zipper protein HDG1 (HD-ZIP protein HDG1) (Homeodomain GLABRA 2-like protein 1) (Homeodomain transcription factor HDG1) (Protein HOMEODOMAIN GLABROUS 1),Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (HD-ZIP protein PDF2) (Homeodomain transcription factor PDF2),START (StAR-related lipid-transfer) lipid-binding domain-containing protein (Uncharacterized protein At5g07260),Putative homeodomain protein (START (StAR-related lipid-transfer) lipid-binding domain-containing protein),Homeodomain GLABROUS 2,Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein,START (StAR-related lipid-transfer) lipid-binding domain-containing protein nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anthocyanin accumulation in tissues in response to UV light [GO:0043481]; cuticle development [GO:0042335]; plant-type cell wall modification [GO:0009827]; root development [GO:0048364]; root hair cell differentiation [GO:0048765]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; plant epidermal cell differentiation [GO:0090627]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; gene silencing by RNA [GO:0031047]; multicellular organism development [GO:0007275]; positive regulation of flower development [GO:0009911]; regulation of gene expression by genetic imprinting [GO:0006349]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; maintenance of floral organ identity [GO:0048497]; transcription, DNA-templated [GO:0006351]; trichome morphogenesis [GO:0010090],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; maintenance of floral organ identity [GO:0048497]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; epidermal cell differentiation [GO:0009913]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351],lipid binding [GO:0008289],integral component of membrane [GO:0016021]; DNA binding [GO:0003677]; lipid binding [GO:0008289],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}.,DEVELOPMENTAL STAGE: Detected in siliques from 3 days after pollination until maturity of seeds. TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.,TISSUE SPECIFICITY: Expressed in siliques, ovules and germinating seeds. {ECO:0000269|PubMed:17189287}.,TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16778018, ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.,TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.,TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. locus:2127008;,locus:2119048;,locus:2131814;,locus:2062540;,locus:2207235;,locus:2098866;,locus:2135368;,locus:2182850;,locus:2116442; AT4G00730,AT4G21750,AT4G25530,AT2G32370,AT1G05230,AT3G61150,AT4G04890,AT5G07260,AT4G26920 homeobox-leucine zipper protein Homeobox-leucine zipper protein ROC6 (GLABRA 2-like homeobox protein 6) (HD-ZIP protein ROC6) (Homeodomain transcription factor ROC6) (Protein RICE OUTERMOST CELL-SPECIFIC 6),Homeobox-leucine zipper protein ROC1 (GLABRA 2-like homeobox protein 1) (HD-ZIP protein ROC1) (Homeodomain transcription factor ROC1) (Protein RICE OUTERMOST CELL-SPECIFIC 1),Homeobox-leucine zipper protein ROC2 (GLABRA 2-like homeobox protein 2) (HD-ZIP protein ROC2) (Homeodomain transcription factor ROC2) (Protein RICE OUTERMOST CELL-SPECIFIC 2),Os08g0187500 protein,Os08g0292000 protein (Fragment),Os04g0627000 protein (Fragment),Os09g0526300 protein (Fragment) Q7Y0V7,Q6ZAR0,Q0J9X2,A0A0P0XCM0,A0A0N7KPL6,A0A0P0WFC7,A0A0P0XEM8,A0A0P0XPZ2 ROC6_ORYSJ,ROC1_ORYSJ,ROC2_ORYSJ,A0A0P0XCM0_ORYSJ,A0A0N7KPL6_ORYSJ,A0A0P0WFC7_ORYSJ,A0A0P0XEM8_ORYSJ,A0A0P0XPZ2_ORYSJ ROC6 GL2-6 Os09g0526300 LOC_Os09g35760,ROC1 GL2-1 Os08g0187500 LOC_Os08g08820 P0020B10.22 P0547A06.49,ROC2 GL2-2 Os04g0627000 LOC_Os04g53540 OSJNBb0060E08.16,Os08g0187500 OSNPB_080187500,Os08g0292000 OSNPB_080292000,Os04g0627000 OSNPB_040627000,Os09g0526300 OSNPB_090526300 FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. ENOG411DR1T SAMC2,SAMC1 F4HT41,Q94AG6,A0A1P8ATX1 SAMC2_ARATH,SAMC1_ARATH,A0A1P8ATX1_ARATH Probable S-adenosylmethionine carrier 2, chloroplastic,S-adenosylmethionine carrier 1, chloroplastic/mitochondrial (S-adenosylmethionine transporter 1) (AtSAMT1),S-adenosylmethionine carrier 2 DISRUPTION PHENOTYPE: Severely growth-retarded phenotype and reduced chlorophyll and plastoquinone contents. Unable to germinate when homozygous. {ECO:0000269|PubMed:16950860, ECO:0000269|PubMed:17098813}. pale-green leaf phenotype during the first weeks and a severely growth-retarded. Low germination rate; Dwarf; Pale green leaves; Late flowering-B. Camara-2006 FUNCTION: Probable S-adenosylmethionine (SAM) transporter able to catalyze both uniport and exchange reactions through membranes.,FUNCTION: Transporter involved in exchange reactions through membranes. Has a low uniporter activity. Specifically mediates the transport of S-adenosylmethionine (SAM) and its closest analogs. Probably involved in the uptake of SAM in exchange for S-adenosylhomocysteine (SAHC), which is produced from SAM in the mitochondrial matrix and plastidial stroma by methyltransferase activities. {ECO:0000269|PubMed:16950860, ECO:0000269|PubMed:17098813}. R-ATH-425393; 36883,34861,36142 Probable S-adenosylmethionine carrier 2, chloroplastic,S-adenosylmethionine carrier 1, chloroplastic/mitochondrial (S-adenosylmethionine transporter 1) (AtSAMT1),S-adenosylmethionine carrier 2 chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; S-adenosyl-L-methionine transmembrane transporter activity [GO:0000095]; mitochondrial transport [GO:0006839],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; S-adenosyl-L-methionine transmembrane transporter activity [GO:0000095]; chloroplast organization [GO:0009658]; mitochondrial transport [GO:0006839]; S-adenosyl-L-methionine transport [GO:0015805],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed at low levels in seedlings, leaves, flowers, stems and roots. {ECO:0000269|PubMed:16950860}.,TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, leaves and flowers. Lower levels of expression in stems and roots. Not detected in senescent leaves, petals and pollen grains. {ECO:0000269|PubMed:16950860, ECO:0000269|PubMed:17098813}. locus:505006167;,locus:2122452; AT1G34065,AT4G39460 Mitochondrial carrier protein Os05g0361900 protein (Putative mitochondrial carrier protein) (cDNA clone:001-038-E09, full insert sequence) (cDNA clone:006-308-C07, full insert sequence) (cDNA clone:006-308-G08, full insert sequence),Mitochondrial aspartate-glutamate carrier protein-like (Os07g0295000 protein) (cDNA clone:J023115D04, full insert sequence) (cDNA clone:J023137D03, full insert sequence),Os05g0361900 protein Q6L4L8,Q6YVE7,A0A0P0WLC2,A0A0P0WLA6 Q6L4L8_ORYSJ,Q6YVE7_ORYSJ,A0A0P0WLC2_ORYSJ,A0A0P0WLA6_ORYSJ Os05g0361900 OsJ_18234 OSNPB_050361900 P0530H10.16 P0692D12.10,B1120F06.131 Os07g0295000 OSNPB_070295000,Os05g0361900 OSNPB_050361900 ENOG411DR1W Q4PSZ5,Q29Q34 Q4PSZ5_ARATH,Q29Q34_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Putative cinnamyl-alcohol dehydrogenase),At5g19440 (NAD(P)-binding Rossmann-fold superfamily protein) ARA:AT1G51410-MONOMER;,ARA:AT5G19440-MONOMER; 35919,35594 NAD(P)-binding Rossmann-fold superfamily protein (Putative cinnamyl-alcohol dehydrogenase),At5g19440 (NAD(P)-binding Rossmann-fold superfamily protein) alcohol dehydrogenase (NAD) activity [GO:0004022]; coenzyme binding [GO:0050662],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; alcohol dehydrogenase (NAD) activity [GO:0004022]; coenzyme binding [GO:0050662] locus:2033904;,locus:2150315; AT1G51410,AT5G19440 bifunctional dihydroflavonol 4-reductase flavanone Os01g0528800 protein (Putative cinnamyl alcohol dehydrogenase) (cDNA clone:001-025-F12, full insert sequence) (cDNA clone:J013162A03, full insert sequence) Q5QM39 Q5QM39_ORYSJ Os01g0528800 Os01g0528800 B1129H01.17 OsJ_02064 OSNPB_010528800 ENOG411DR1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os10g0130701 protein,Os06g0483500 protein,Os11g0491600 protein,Os09g0445900 protein Q8L4L9,A0A0P0WWQ9,A0A0P0Y2C6,A0A0P0XMS5 Q8L4L9_ORYSJ,A0A0P0WWQ9_ORYSJ,A0A0P0Y2C6_ORYSJ,A0A0P0XMS5_ORYSJ Os10g0130701 OSJNAb0072F04.12 OSJNBb0072F04.18 OSNPB_100130701,Os06g0483500 OSNPB_060483500,Os11g0491600 OSNPB_110491600,Os09g0445900 OSNPB_090445900 ENOG411DR1H F13G24.180,F13G24.170 A0A1P8BDJ5,Q9FF08,Q9SD86,Q9SD87 A0A1P8BDJ5_ARATH,Q9FF08_ARATH,Q9SD86_ARATH,Q9SD87_ARATH Dentin sialophosphoprotein-like protein,Dentin sialophosphoprotein-like protein (Uncharacterized protein F13G24.180),Dentin sialophosphoprotein-like protein (Uncharacterized protein At5g07970) (Uncharacterized protein F13G24.170) 162895,167418,164361,121119 Dentin sialophosphoprotein-like protein,Dentin sialophosphoprotein-like protein (Uncharacterized protein F13G24.180),Dentin sialophosphoprotein-like protein (Uncharacterized protein At5g07970) (Uncharacterized protein F13G24.170) plasmodesma [GO:0009506] locus:2142818;,locus:2142873;,locus:2142863; AT5G07940,AT5G07980,AT5G07970 expressed protein Expressed protein (Os03g0213300 protein),Expressed protein (Os10g0316400 protein),Os03g0213300 protein (Fragment) Q10Q16,Q33A23,Q33A24,A0A0P0VUN6 Q10Q16_ORYSJ,Q33A23_ORYSJ,Q33A24_ORYSJ,A0A0P0VUN6_ORYSJ LOC_Os03g11460 Os03g0213300 OsJ_09898 OSNPB_030213300,Os10g0316400 LOC_Os10g16640 OSNPB_100316400,Os10g0316400 LOC_Os10g16640 Os10g0316400 OSNPB_100316400,Os03g0213300 OSNPB_030213300 ENOG411DR1K 5FCL Q8L539 5FCL_ARATH 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (5-FCL) (EC 6.3.3.2) DISRUPTION PHENOTYPE: Reduced growth rate and delayed flowering. {ECO:0000269|PubMed:15888445}. FUNCTION: Contributes to tetrahydrofolate metabolism and photorespiration through the regulation of serine hydroxymethyltransferase. Prefers the pentalutamyl to the monoglutamyl form of 5-formyltetrahydrofolate. {ECO:0000269|PubMed:12207015, ECO:0000269|PubMed:15888445}. ARA:AT5G13050-MONOMER; R-ATH-196757; 6.3.3.2; 6.3.3.2 31233 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (5-FCL) (EC 6.3.3.2) mitochondrion [GO:0005739]; 5-formyltetrahydrofolate cyclo-ligase activity [GO:0030272]; ATP binding [GO:0005524]; folic acid-containing compound biosynthetic process [GO:0009396]; tetrahydrofolate interconversion [GO:0035999]; tetrahydrofolate metabolic process [GO:0046653] locus:2179827; AT5G13050 5-formyltetrahydrofolate cycloligase 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2),Os07g0578600 protein A3BLI0,Q0D564,A0A0P0X7X2 A3BLI0_ORYSJ,Q0D564_ORYSJ,A0A0P0X7X2_ORYSJ Os07g0578600 OsJ_24872 OSNPB_070578600,Os07g0578600 Os07g0578600 OSNPB_070578600,Os07g0578600 OSNPB_070578600 ENOG411DR1J ALDH10A9,ALDH10A8 Q9STS1,Q9S795,F4HXD2 BADH2_ARATH,BADH1_ARATH,F4HXD2_ARATH Betaine aldehyde dehydrogenase 2, mitochondrial (BADH) (EC 1.2.1.8) (Aldehyde dehydrogenase family 10 member A9),Betaine aldehyde dehydrogenase 1, chloroplastic (BADH) (EC 1.2.1.8) (Aldehyde dehydrogenase family 10 member A8),Aldehyde dehydrogenase 10A8 Sensitive to drought, salt, and mannitol-D. Bartels-2011 PATHWAY: Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine from betaine aldehyde: step 1/1. ARA:AT3G48170-MONOMER;MetaCyc:AT3G48170-MONOMER;,ARA:AT1G74920-MONOMER; R-ATH-71262; 1.2.1.8; 1.2.1.8 54918,54432,53978 Betaine aldehyde dehydrogenase 2, mitochondrial (BADH) (EC 1.2.1.8) (Aldehyde dehydrogenase family 10 member A9),Betaine aldehyde dehydrogenase 1, chloroplastic (BADH) (EC 1.2.1.8) (Aldehyde dehydrogenase family 10 member A8),Aldehyde dehydrogenase 10A8 mitochondrion [GO:0005739]; peroxisome [GO:0005777]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; betaine-aldehyde dehydrogenase activity [GO:0008802]; oxidation-reduction process [GO:0055114]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; leucoplast [GO:0009516]; betaine-aldehyde dehydrogenase activity [GO:0008802]; glycine betaine biosynthetic process from choline [GO:0019285]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],oxidoreductase activity [GO:0016491] locus:2100449;,locus:2027186; AT3G48170,AT1G74920 Betaine aldehyde dehydrogenase Betaine aldehyde dehydrogenase 1 (OsBADH1) (EC 1.2.1.8),Betaine aldehyde dehydrogenase 2 (OsBADH2) (EC 1.2.1.8),Os08g0424500 protein (Fragment) O24174,Q84LK3,A0A0P0XG36 BADH1_ORYSJ,BADH2_ORYSJ,A0A0P0XG36_ORYSJ BADH1 Os04g0464200 LOC_Os04g39020 OSJNBa0060P14.8,BADH2 fgr LOC_Os08g32870 Os08g0424500 OsJ_27367 OSJNBa0056L09.30 P0456B03.101,Os08g0424500 OSNPB_080424500 DISRUPTION PHENOTYPE: Reduced crop productivity, but increased accumulation of gamma-4-aminobutyraldehyde (GAB-ald) and higher 2-acetyl-1-pyrroline (2AP) biosynthesis, which influences aroma. {ECO:0000269|PubMed:18599581, ECO:0000269|PubMed:18840300}. FUNCTION: Dehydrogenase that can use N-acetyl-gamma-aminobutyraldehyde (NAGABald), gamma-guanidinobutyraldehyde (GGBald), betaine aldehyde (Bet-ald), gamma-aminobutyraldehyde (GAB-ald), acetaldehyde, 4-aminobutylaldehyde (AB-ald), 3-aminopropionaldehyde (AP-ald), 4-N-trimethylaminobutyraldehyde (TMAB-ald) and 3-N-trimethylaminopropionaldehyde (TMAP-ald) as substrates. Catalyzes the oxidation of GAB-ald more efficiently than Bet-ald. May convert acetaldehyde into acetate, thus facilitating the production of acetyl-CoA in peroxisomes under anaerobic conditions. {ECO:0000269|PubMed:18704694, ECO:0000269|PubMed:19850038, ECO:0000269|PubMed:22534193}.,FUNCTION: Dehydrogenase that can use N-acetyl-gamma-aminobutyraldehyde (NAGABald), gamma-guanidinobutyraldehyde (GGBald), betaine aldehyde (Bet-ald), gamma-aminobutyraldehyde (GAB-ald), acetaldehyde, 4-aminobutylaldehyde (AB-ald), 3-aminopropionaldehyde (AP-ald), 4-N-trimethylaminobutyraldehyde (TMAB-ald) and 3-N-trimethylaminopropionaldehyde (TMAP-ald) as substrates. Catalyzes the oxidation of GAB-ald more efficiently than Bet-ald. Mediates the conversion of GAB-ald into gamma-aminobutyric acid (GABA), and prevents the formation of 2-acetyl-1-pyrroline (2AP) which gives fragrant rice its aromatic properties. {ECO:0000269|PubMed:18491070, ECO:0000269|PubMed:18599581, ECO:0000269|PubMed:18704694, ECO:0000269|PubMed:19850038, ECO:0000269|PubMed:22534193}. MISCELLANEOUS: Present in a truncated form, mostly allele badh2.1, also called 'fgr' in fragrant rice varieties (e.g. basmati and jasmine rice). The loss of activity leads to accumulation of 2-acetyl-1-pyrroline (2AP) that confers the flavor of fragrant rice. Haplotype analysis suggests a single origin of the badh2.1 allele within the Japonica varietal group and demonstrates the introgression of this allele from Japonica to Indica (PubMed:17129318, PubMed:18599581, PubMed:18491070, PubMed:19371779, PubMed:19706531). {ECO:0000305|PubMed:17129318, ECO:0000305|PubMed:18491070, ECO:0000305|PubMed:18599581, ECO:0000305|PubMed:19371779, ECO:0000305|PubMed:19706531}. ENOG411DR1N TWN2 P93736,F4HR51 SYVM1_ARATH,F4HR51_ARATH Valine--tRNA ligase, mitochondrial 1 (EC 6.1.1.9) (AtSYV1) (Protein TWIN 2) (Valyl-tRNA synthetase) (ValRS),Valyl-tRNA synthetase / valine-tRNA ligase-like protein Embryo defective; Suspensor-derived twin embryos; Female gametophyte defective-C. Somerville-1997 FUNCTION: Required for embryo development and seed viability. {ECO:0000269|PubMed:9207094}. ARA:AT1G14610-MONOMER; 6.1.1.9; 6.1.1.9 125926,23612 Valine--tRNA ligase, mitochondrial 1 (EC 6.1.1.9) (AtSYV1) (Protein TWIN 2) (Valyl-tRNA synthetase) (ValRS),Valyl-tRNA synthetase / valine-tRNA ligase-like protein chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; valine-tRNA ligase activity [GO:0004832]; embryo development ending in seed dormancy [GO:0009793]; valyl-tRNA aminoacylation [GO:0006438],ATP binding [GO:0005524]; valine-tRNA ligase activity [GO:0004832]; valyl-tRNA aminoacylation [GO:0006438] locus:2204543;,locus:2205789; AT1G14610,AT1G27160 Valyl-tRNA Os03g0694900 protein (Putative valyl tRNA synthetase) (Valyl-tRNA synthetase, putative, expressed),Os03g0335600 protein,Os10g0506200 protein,Os03g0111700 protein Q851K9,A0A0P0VX51,A0A0P0XWD3,A0A0P0VSC8 Q851K9_ORYSJ,A0A0P0VX51_ORYSJ,A0A0P0XWD3_ORYSJ,A0A0P0VSC8_ORYSJ Os03g0694900 LOC_Os03g48850 Os03g0694900 OSJNBa0010B01.6 OSJNBb0021O11.3 OSNPB_030694900,Os03g0335600 OSNPB_030335600,Os10g0506200 OSNPB_100506200,Os03g0111700 OSNPB_030111700 ENOG411DR1B PAP9,PAP2 Q9ZQ81,Q9LMG7 PPA9_ARATH,PPA2_ARATH Probable inactive purple acid phosphatase 9,Probable inactive purple acid phosphatase 2 ARA:AT2G03450-MONOMER;,ARA:AT1G13900-MONOMER; 73813,73717 Probable inactive purple acid phosphatase 9,Probable inactive purple acid phosphatase 2 extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; endosome [GO:0005768]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; mitochondrial envelope [GO:0005740]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; mitochondrion targeting sequence binding [GO:0030943]; protein import into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626]; regulation of carbohydrate metabolic process [GO:0006109] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2063777;,locus:2014839; AT2G03450,AT1G13900 inactive purple acid phosphatase NA NA NA NA NA NA NA ENOG411DR1E TBL2 Q8VYR3 TBL2_ARATH Protein trichome birefringence-like 2 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 61394 Protein trichome birefringence-like 2 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] TISSUE SPECIFICITY: Not expressed in trichomes. {ECO:0000269|PubMed:20388664}. locus:2036631; AT1G60790 Pfam:DUF231 OSJNBa0043L24.14 protein (OSJNBb0002J11.24 protein) (Os04g0508000 protein) Q7X6G0 Q7X6G0_ORYSJ Os04g0508000 OsJ_15402 OSJNBa0043L24.14 OSJNBb0002J11.24 OSNPB_040508000 ENOG411DR1D Q9FY87 Q9FY87_ARATH Pectate lyase (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. 4.2.2.2 32971 Pectate lyase (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2184797; AT5G09280 Pectate lyase Pectate lyase (EC 4.2.2.2) A0A0P0XED9 A0A0P0XED9_ORYSJ Os08g0286100 OSNPB_080286100 ENOG411DR1G Q9LNT0,Q8GYY3,Q9LN66,Q9LQT4,Q8GUG1,A0A1P8B6P8,A8MS42 Q9LNT0_ARATH,Q8GYY3_ARATH,Q9LN66_ARATH,Q9LQT4_ARATH,Q8GUG1_ARATH,A0A1P8B6P8_ARATH,A8MS42_ARATH Pathogenesis-related thaumatin superfamily protein (T20H2.19 protein),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin),At1g19320 (F18O14.4) (Pathogenesis-related thaumatin superfamily protein),At1g75800/T4O12_2 (Pathogenesis-related thaumatin superfamily protein) (T4O12.3),At1g20030 (Calreticulin, putative) (Pathogenesis-related thaumatin superfamily protein) (Thaumatin-like protein),Receptor Serine/Threonine kinase-like protein,Pathogenesis-related thaumatin superfamily protein 33495,30096,25431,34884,31558,27016,28229 Pathogenesis-related thaumatin superfamily protein (T20H2.19 protein),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin),At1g19320 (F18O14.4) (Pathogenesis-related thaumatin superfamily protein),At1g75800/T4O12_2 (Pathogenesis-related thaumatin superfamily protein) (T4O12.3),At1g20030 (Calreticulin, putative) (Pathogenesis-related thaumatin superfamily protein) (Thaumatin-like protein),Receptor Serine/Threonine kinase-like protein,Pathogenesis-related thaumatin superfamily protein anchored component of membrane [GO:0031225],kinase activity [GO:0016301] locus:2198641;,locus:2121204;,locus:2016442;,locus:2005549; AT1G20030,AT4G38670,AT1G19320,AT1G75800 thaumatin-like protein Os03g0244200 protein (SCUTL1, putative, expressed) (cDNA clone:001-202-E10, full insert sequence),Os03g0244200 protein (Fragment) Q10P75,A0A0P0VVE5 Q10P75_ORYSJ,A0A0P0VVE5_ORYSJ Os03g0244200 LOC_Os03g14050 Os03g0244200 OSNPB_030244200,Os03g0244200 OSNPB_030244200 ENOG411DR1F A0A1P8B8I4,F4JM51 A0A1P8B8I4_ARATH,F4JM51_ARATH Phosphorylase superfamily protein 28322,38484 Phosphorylase superfamily protein catalytic activity [GO:0003824]; nucleoside metabolic process [GO:0009116] locus:2123543; AT4G28940 bark storage protein A-like Os05g0228000 protein (cDNA clone:J033055L05, full insert sequence),Os01g0229800 protein Q6AVB5,A0A0P0V061 Q6AVB5_ORYSJ,A0A0P0V061_ORYSJ Os05g0228000 Os05g0228000 OJ1212_C10.15 OsJ_17617 OSNPB_050228000,Os01g0229800 OSNPB_010229800 ENOG411EAPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FtsJ-like methyltransferase NA NA NA NA NA NA NA ENOG411EAPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA solute carrier family 35 member NA NA NA NA NA NA NA ENOG411EAPA MYB76,MYB29 Q9SPG5,Q9FLR1 MYB76_ARATH,MYB29_ARATH Transcription factor MYB76 (Myb-related protein 76) (AtMYB76) (Protein HIGH ALIPHATIC GLUCOSINOLATE 2),Transcription factor MYB29 (Myb-related protein 29) (AtMYB29) (Protein HIGH ALIPHATIC GLUCOSINOLATE 3) (Protein PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2) DISRUPTION PHENOTYPE: Low levels of aliphatic glucosinolates. {ECO:0000269|PubMed:23580754}. No visible phenotype. FUNCTION: Plays a role in determining the spatial distribution of aliphatic glucosinolates (AGLSs) within the leaf, mostly short chained. Together with MYB28/HAG1 and MYB29/HAG3, promotes aliphatic glucosinolate biosynthesis and represses indolic glucosinolate biosynthesis, but could not activate AGSL biosynthesis on its own. {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}.,FUNCTION: Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. 38194,37966 Transcription factor MYB76 (Myb-related protein 76) (AtMYB76) (Protein HIGH ALIPHATIC GLUCOSINOLATE 2),Transcription factor MYB29 (Myb-related protein 29) (AtMYB29) (Protein HIGH ALIPHATIC GLUCOSINOLATE 3) (Protein PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of glucosinolate biosynthetic process [GO:0010439]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cellular response to sulfur starvation [GO:0010438]; defense response to fungus [GO:0050832]; drought recovery [GO:0009819]; hormone-mediated signaling pathway [GO:0009755]; induced systemic resistance [GO:0009682]; jasmonic acid mediated signaling pathway [GO:0009867]; mitochondria-nucleus signaling pathway [GO:0031930]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; regulation of glucosinolate biosynthetic process [GO:0010439]; regulation of response to water deprivation [GO:2000070]; regulation of RNA binding transcription factor activity [GO:1905255]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to bacterium [GO:0009617]; response to gibberellin [GO:0009739]; response to high light intensity [GO:0009644]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Primarily present around the midvein in seedlings. Accumulates gradually in expanding leaves, reaching a maximum in fully expanded leaves in both primary and secondary veins. {ECO:0000269|PubMed:18042203}.,DEVELOPMENTAL STAGE: Primarily present around the midvein in seedlings. Accumulates gradually in expanding leaves, reaching a maximum in fully expanded leaves in the primary vein. {ECO:0000269|PubMed:18042203}. TISSUE SPECIFICITY: Expressed in both vegetative and generative organs. Mostly present in inflorescences, flowers and seedlings, in the transition zone between roots and the foliar part, and stems, and, to a lower extent, in leaves (in midvein and trichomes). {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23115560}.,TISSUE SPECIFICITY: Expressed in both vegetative and generative organs. Mostly present in seedlings, inflorescences, roots and stems, and, to a lower extent, in leaves (in midvein and trichomes) and siliques. {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:9839469}. locus:2160349;,locus:2160339; AT5G07700,AT5G07690 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411DR18 TFL1,CEN P93003,Q9ZNV5 TFL1_ARATH,CEN_ARATH Protein TERMINAL FLOWER 1,Protein CENTRORADIALIS-like DISRUPTION PHENOTYPE: Plants do not show a phenotype similar to those of TERMINAL FLOWER 1 mutants. {ECO:0000269|PubMed:11318875}. Abnormal flower (fusion of two or three flowers because it consisted of more sepals petals stamens and carpels than a wild-type flower) at the apex of primary inflorescence after developing a few lateral flowers which appeared to be morphologically normal. Inflorescences terminate early with a single flower; Early flowering independent of photoperiod-F. Motoyoshi-1997 FUNCTION: Controls inflorescence meristem identity and is required for maintenance of a indeterminate inflorescence. Prevents the expression of 'APETALA1' and 'LEAFY'. Also plays a role in the regulation of the time of flowering in the long-day flowering pathway. May form complexes with phosphorylated ligands by interfering with kinases and their effectors (By similarity). {ECO:0000250}.,FUNCTION: May form complexes with phosphorylated ligands by interfering with kinases and their effectors (By similarity). Can substitute for TERMINAL FLOWER 1 (in vitro). {ECO:0000250}. "MISCELLANEOUS: Mutagenesis of His-88 to Tyr converts the repressor of flowering ""TERMINAL FLOWER 1"" into a ""FLOWERING LOCUS T""-like activator of flowering." R-ATH-5675221; 20158,19893 Protein TERMINAL FLOWER 1,Protein CENTRORADIALIS-like cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; vesicle [GO:0031982]; transcription cofactor activity [GO:0003712]; cell differentiation [GO:0030154]; flower development [GO:0009908]; negative regulation of cell aging [GO:0090344]; negative regulation of flower development [GO:0009910]; protein targeting to vacuole [GO:0006623]; response to sucrose [GO:0009744],cytoplasm [GO:0005737]; nucleus [GO:0005634]; negative regulation of flower development [GO:0009910]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Weakly expressed in vegetative phase from day 2 or day 3. Increased expression after commitment to flowering from day 7 on. TISSUE SPECIFICITY: Expressed below the apical dome of inflorescence and coflorescence meristems, and in inflorescence stem.,TISSUE SPECIFICITY: Expressed in tissues surrounding vascular bundles in hypocotyl of 2-week-old plants. {ECO:0000269|PubMed:11318875}. locus:2150595;,locus:2038643; AT5G03840,AT2G27550 Cen-like protein OSJNBa0073L04.4 protein (Os04g0411400 protein) (cDNA clone:002-169-A07, full insert sequence),Os02g0531600 protein (Putative Cen-like protein) (cDNA, clone: J100010A16, full insert sequence),CENTRORADIALIS, putative, expressed (Os12g0152000 protein),CEN-like protein 2, putative, expressed (Os11g0152500 protein) (Phosphatidylethanolamine-binding protein) Q7XVG4,Q6ESF8,Q2QXL9,Q53Q71 Q7XVG4_ORYSJ,Q6ESF8_ORYSJ,Q2QXL9_ORYSJ,Q53Q71_ORYSJ Os04g0411400 Os04g0411400 OsJ_14719 OSJNBa0073L04.4 OSNPB_040411400,Os02g0531600 Os02g0531600 OsJ_07001 OSNPB_020531600 P0605D08.14,LOC_Os12g05590 Os12g0152000 OsJ_35245 OSNPB_120152000,LOC_Os11g05470 Os11g0152500 OsJ_32992 OSNPB_110152500 ENOG411DR11 DBR1 Q94K01,A0A1P8B568 DBR1_ARATH,A0A1P8B568_ARATH Lariat debranching enzyme (AtDBR1) (EC 3.1.-.-),Debranching enzyme 1 Embryo defective; Cotyledon-S. Perry-2004 FUNCTION: Cleaves the 2'-5' phosphodiester linkage at the branch point of lariat intron pre-mRNAs after splicing and converts them into linear molecules that are subsequently degraded. It thereby facilitates ribonucleotide turnover. It may also participate in retrovirus replication via an RNA lariat intermediate in cDNA synthesis. Plays en essential role during embryogenesis. {ECO:0000269|PubMed:14570879}. 3.1.-.- 48175,46793 Lariat debranching enzyme (AtDBR1) (EC 3.1.-.-),Debranching enzyme 1 nucleus [GO:0005634]; RNA lariat debranching enzyme activity [GO:0008419]; embryo development ending in seed dormancy [GO:0009793]; mRNA splicing, via spliceosome [GO:0000398],hydrolase activity, acting on ester bonds [GO:0016788]; mRNA processing [GO:0006397] TISSUE SPECIFICITY: Widely expressed. Expressed in roots, stems, cauline and rosette leaves, flower buds and siliques. {ECO:0000269|PubMed:14570879}. locus:2124829; AT4G31770 Lariat debranching Lariat debranching enzyme (EC 3.1.-.-),Os03g0725300 protein Q6AU07,A0A0P0W316 DBR1_ORYSJ,A0A0P0W316_ORYSJ DBR1 Os03g0725300 LOC_Os03g51540 OSJNBb0122C16.4,Os03g0725300 OSNPB_030725300 FUNCTION: Cleaves the 2'-5' phosphodiester linkage at the branch point of lariat intron pre-mRNAs after splicing and converts them into linear molecules that are subsequently degraded. It thereby facilitates ribonucleotide turnover. It may also participate in retrovirus replication via an RNA lariat intermediate in cDNA synthesis (By similarity). {ECO:0000250}. ENOG411DR10 Q8RX37,Q3EAZ3,Q9SUF4,O80871,F4IFH3,F4IG99,Q3ED35 P2C02_ARATH,P2C45_ARATH,P2C53_ARATH,P2C25_ARATH,F4IFH3_ARATH,F4IG99_ARATH,Q3ED35_ARATH Probable protein phosphatase 2C 2 (AtPP2C02) (EC 3.1.3.16) (Protein phosphatase AP2C2),Putative protein phosphatase 2C-like protein 45 (AtPP2C45) (Protein phosphatase AP2C6),Putative protein phosphatase 2C 53 (AtPP2C53) (EC 3.1.3.16) (Protein phosphatase AP2C5),Probable protein phosphatase 2C 25 (AtPP2C25) (EC 3.1.3.16) (Protein phosphatase AP2C1),Cytochrome C oxidase polypeptide VIB family protein,Protein phosphatase 2C family protein DISRUPTION PHENOTYPE: High jasmonate production and PDF1.2 expression upon wounding. Slight reduction of lesion size caused by fungal pathogen. Slight decrease of spider mite reproductive performance. {ECO:0000269|PubMed:17630279}. Increased stomatal width; Germination sensitive to ABA-A. Gust-2010 FUNCTION: Protein phosphatase that negatively regulates defense respones. Inactivates MPK4 and MPK6 MAP kinases involved in stress and defense signaling. {ECO:0000269|PubMed:17630279}. 3.1.3.16 40709,26567,23323,42420,12919,21966,20199 Probable protein phosphatase 2C 2 (AtPP2C02) (EC 3.1.3.16) (Protein phosphatase AP2C2),Putative protein phosphatase 2C-like protein 45 (AtPP2C45) (Protein phosphatase AP2C6),Putative protein phosphatase 2C 53 (AtPP2C53) (EC 3.1.3.16) (Protein phosphatase AP2C5),Probable protein phosphatase 2C 25 (AtPP2C25) (EC 3.1.3.16) (Protein phosphatase AP2C1),Cytochrome C oxidase polypeptide VIB family protein,Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722],nucleus [GO:0005634]; plastid [GO:0009536]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; abscisic acid-activated signaling pathway [GO:0009738]; defense response to fungus [GO:0050832]; response to fungus [GO:0009620]; response to wounding [GO:0009611] locus:2007327;,locus:2095133;,locus:2132497;,locus:2045678;,locus:2058073;,locus:2044948;,locus:2035539; AT1G07160,AT3G27140,AT4G08260,AT2G30020,AT2G14270,AT2G05050,AT1G32720 phosphatase 2C Probable protein phosphatase 2C 32 (OsPP2C32) (EC 3.1.3.16) Q10MX1 P2C32_ORYSJ Os03g0292100 LOC_Os03g18150 ENOG411DR13 CYP707A3,CYP707A1 Q9FH76,Q949P1,A8MRX5 ABAH3_ARATH,ABAH1_ARATH,A8MRX5_ARATH Abscisic acid 8'-hydroxylase 3 (ABA 8'-hydroxylase 3) (EC 1.14.13.93) (Cytochrome P450 707A3),Abscisic acid 8'-hydroxylase 1 (ABA 8'-hydroxylase 1) (EC 1.14.13.93) (Cytochrome P450 707A1),Cytochrome P450, family 707, subfamily A, polypeptide 1 DISRUPTION PHENOTYPE: Plants are not affected in seed germination, but show a restricted greening rate after germination and increase the drought resistance. {ECO:0000269|PubMed:16623881}.,DISRUPTION PHENOTYPE: Plants show a reduced germination. {ECO:0000269|PubMed:16543410}. ABA levels in dry seeds are 20-fold higher compared to those in wild type.,ABA levels in dry seeds are 5-fold higher compared to those in wild type.,Higher survival rate than wild type after 14 days of water withholding. This phenotype is supported by the observation of a moderate suppression of transpiration in the mutant.,No difference in ABA levels compared to wild type.,No visible phenotype.,Accumulates ABA to 10-fold higher levels than wild type.,Significant reduction in the percentage of germination unless seeds were stratified.,ABA levels in dry seeds are 50-fold higher compared to those in wild type.,Accumulates ABA to 7-fold higher levels than wild type. Resistant to drought-K. Shinozaki-2006,Low ABA levels; Low germination rate without stratification-E. Nambara-2006 FUNCTION: Involved in the oxidative degradation of abscisic acid, but not in the isomerization of the produced 8'-hydroxyabscisic acid (8'-OH-ABA) to (-)-phaseic acid (PA). Involved in the control of postgermination growth. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:15064374, ECO:0000269|PubMed:16623881}.,FUNCTION: Involved in the oxidative degradation of abscisic acid. Plays an important role in determining abscisic acid levels in dry seeds and in the control of postgermination growth. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:15064374, ECO:0000269|PubMed:16543410}. PATHWAY: Plant hormone degradation; abscisic acid degradation. ARA:AT5G45340-MONOMER;MetaCyc:AT5G45340-MONOMER;,ARA:AT4G19230-MONOMER;MetaCyc:AT4G19230-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.13.93; 1.14.13.93 52367,53037,55334 Abscisic acid 8'-hydroxylase 3 (ABA 8'-hydroxylase 3) (EC 1.14.13.93) (Cytochrome P450 707A3),Abscisic acid 8'-hydroxylase 1 (ABA 8'-hydroxylase 1) (EC 1.14.13.93) (Cytochrome P450 707A1),Cytochrome P450, family 707, subfamily A, polypeptide 1 integral component of membrane [GO:0016021]; (+)-abscisic acid 8'-hydroxylase activity [GO:0010295]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; abscisic acid catabolic process [GO:0046345]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; response to red or far red light [GO:0009639]; response to water deprivation [GO:0009414]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; (+)-abscisic acid 8'-hydroxylase activity [GO:0010295]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; abscisic acid catabolic process [GO:0046345]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; sterol metabolic process [GO:0016125],(+)-abscisic acid 8'-hydroxylase activity [GO:0010295]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; abscisic acid metabolic process [GO:0009687]; defense response to fungus [GO:0050832]; release of seed from dormancy [GO:0048838]; response to red or far red light [GO:0009639] DEVELOPMENTAL STAGE: Up-regulated 12 hours after imbibition. {ECO:0000269|PubMed:15044947}.,DEVELOPMENTAL STAGE: Expressed predominantly during mid-maturation of seed and down-regulated during late maturation. Up-regulated 12 hours after seed imbibition. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:16543410}. TISSUE SPECIFICITY: Mainly expressed in flower buds, flowers, rosette leaves and roots. Lower expression in mature siliques and inflorescence stems. Not expressed in dry seeds. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:15064374}.,TISSUE SPECIFICITY: Mainly expressed in flowers, siliques, roots and stems. Lower expression in rosette leaves and dry seeds. Expressed in vascular tissues of embryo during the seed development. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:15064374, ECO:0000269|PubMed:16543410}. locus:2158480;,locus:2134781; AT5G45340,AT4G19230 Abscisic acid 8'-hydroxylase Abscisic acid 8'-hydroxylase 1 (ABA 8'-hydroxylase 1) (EC 1.14.13.93) (Cytochrome P450 707A5) (OsABA8ox1),Os02g0703600 protein Q05JG2,A0A0P0VNB7 ABAH1_ORYSJ,A0A0P0VNB7_ORYSJ CYP707A5 ABA8OX1 Os02g0703600 LOC_Os02g47470 OJ1218_D07.28 OsJ_007800 P0724B10.17,Os02g0703600 OSNPB_020703600 FUNCTION: Involved in the oxidative degradation of abscisic acid. ENOG411DR12 CLC-C,CLC-G,CLC-D Q96282,P60300,P92943,A0A1P8B9J9 CLCC_ARATH,CLCG_ARATH,CLCD_ARATH,A0A1P8B9J9_ARATH Chloride channel protein CLC-c (AtCLC-c) (CBS domain-containing protein CBSCLC4),Putative chloride channel-like protein CLC-g (CBS domain-containing protein CBSCLC6),Chloride channel protein CLC-d (AtCLC-d) (CBS domain-containing protein CBSCLC2),Chloride channel protein Root growth at neutral and acidic pH on synthetic medium impaired. Abnormal stomatal response to light; Sensitive to salt-L. Leonhardt-2010,Short roots; Sensitive to concanamycin A (vacuole proton pump inhibitor)-U. Ludwig-2007 FUNCTION: Voltage-gated chloride channel.,FUNCTION: Putative voltage-gated chloride channel. R-ATH-2672351; 85232,83858,87062,84874 Chloride channel protein CLC-c (AtCLC-c) (CBS domain-containing protein CBSCLC4),Putative chloride channel-like protein CLC-g (CBS domain-containing protein CBSCLC6),Chloride channel protein CLC-d (AtCLC-d) (CBS domain-containing protein CBSCLC2),Chloride channel protein chloride channel complex [GO:0034707]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; voltage-gated chloride channel activity [GO:0005247]; chloride transmembrane transport [GO:1902476],chloride channel complex [GO:0034707]; voltage-gated chloride channel activity [GO:0005247]; chloride transmembrane transport [GO:1902476],chloride channel complex [GO:0034707]; trans-Golgi network [GO:0005802]; voltage-gated chloride channel activity [GO:0005247]; unidimensional cell growth [GO:0009826],integral component of membrane [GO:0016021]; voltage-gated chloride channel activity [GO:0005247] TISSUE SPECIFICITY: Broadly expressed in the plant.,TISSUE SPECIFICITY: Broadly expressed in the plant, but predominantly in the silique. locus:2158809;,locus:2183068;,locus:2179724; AT5G49890,AT5G33280,AT5G26240 chloride channel Chloride channel (Os02g0558100 protein),Os03g0695700 protein (Fragment),Os02g0558100 protein,Os01g0876100 protein (Fragment),Chloride channel protein (Fragment) Q6YVX5,Q0DPE7,A0A0P0VKD3,A0A0P0VB46,A0A0N7KFH5 Q6YVX5_ORYSJ,Q0DPE7_ORYSJ,A0A0P0VKD3_ORYSJ,A0A0P0VB46_ORYSJ,A0A0N7KFH5_ORYSJ Os02g0558100 OsJ_07147 OSJNBb0038F20.15-1 OSNPB_020558100,Os03g0695700 OSNPB_030695700,Os02g0558100 OSNPB_020558100,Os01g0876100 OSNPB_010876100 ENOG411DR14 PER9 Q96512 PER9_ARATH Peroxidase 9 (Atperox P9) (EC 1.11.1.7) (ATP18a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G44970-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37741 Peroxidase 9 (Atperox P9) (EC 1.11.1.7) (ATP18a) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2028280; AT1G44970 peroxidase Peroxidase (EC 1.11.1.7) Q9LDY1 Q9LDY1_ORYSJ prx5 Os01g0263000 OsJ_01193 OSNPB_010263000 P0453A06.3 P0469E09.29 ENOG411DR16 PPR40 Q9LSQ2,A0A1I9LN42 PP239_ARATH,A0A1I9LN42_ARATH Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (Protein PENTATRICOPEPTIDE REPEAT 40),Pentatricopeptide (PPR) domain protein 40 semi-dwarf; enhanced sensitivity to salt ABA and oxidative stress; reduced electron transport through Complex III (cytochrome c reductase). Slightly delayed germination; Small rosette; Sensitive to ABA-L. Szabados-2008 FUNCTION: Required for the ubiquinol-cytochrome c oxidoreductase activity of mitochondrial complex III. {ECO:0000269|PubMed:18305213}. 74258,59880 Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (Protein PENTATRICOPEPTIDE REPEAT 40),Pentatricopeptide (PPR) domain protein 40 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial ATP synthesis coupled electron transport [GO:0042775]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; RNA modification [GO:0009451] locus:2086032; AT3G16890 Pentatricopeptide repeat-containing protein Os12g0557800 protein Q0IMN9 Q0IMN9_ORYSJ Os12g0557800 Os12g0557800 OSNPB_120557800 ENOG411EAPU MANP,MAN3,MAN4 Q9LW44,Q9SG94,Q9SG95 MANP_ARATH,MAN3_ARATH,MAN4_ARATH Putative mannan endo-1,4-beta-mannosidase P (EC 3.2.1.78) (Beta-mannanase P) (Endo-beta-1,4-mannanase P) (AtMANP),Mannan endo-1,4-beta-mannosidase 3 (EC 3.2.1.78) (Beta-mannanase 3) (Endo-beta-1,4-mannanase 3) (AtMAN3),Putative mannan endo-1,4-beta-mannosidase 4 (EC 3.2.1.78) (Beta-mannanase 4) (Endo-beta-1,4-mannanase 4) (AtMAN4) ARA:AT3G30540-MONOMER;,ARA:AT3G10890-MONOMER;,ARA:AT3G10900-MONOMER; 3.2.1.78 45356,46462,45376 Putative mannan endo-1,4-beta-mannosidase P (EC 3.2.1.78) (Beta-mannanase P) (Endo-beta-1,4-mannanase P) (AtMANP),Mannan endo-1,4-beta-mannosidase 3 (EC 3.2.1.78) (Beta-mannanase 3) (Endo-beta-1,4-mannanase 3) (AtMAN3),Putative mannan endo-1,4-beta-mannosidase 4 (EC 3.2.1.78) (Beta-mannanase 4) (Endo-beta-1,4-mannanase 4) (AtMAN4) extracellular region [GO:0005576]; mannan endo-1,4-beta-mannosidase activity [GO:0016985]; mannan catabolic process [GO:0046355],apoplast [GO:0048046]; mannan endo-1,4-beta-mannosidase activity [GO:0016985]; detoxification of cadmium ion [GO:0071585]; mannan catabolic process [GO:0046355]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Expressed in leaves, flowers, siliques and seeds. {ECO:0000269|PubMed:16897088}. locus:2103262;,locus:2103197; AT3G30540,AT3G10890,AT3G10900 Cellulase (glycosyl hydrolase family 5) NA NA NA NA NA NA NA ENOG411EAPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EKW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKWD Q9SJI7 PLA20_ARATH Phospholipase A1-IIdelta (EC 3.1.1.-) DISRUPTION PHENOTYPE: Enhanced tolerance to UV-B stress but not osmotic stress. Impaired PR-1 accumulation in response to UV-B. {ECO:0000269|PubMed:15181214}. FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine (PC) at the sn-1 position. High activity toward PC, medium activity toward monogalactosyldiacylglycerol (MGDG) and low activity toward triacylglycerol (TAG). Confers sensitivity to UV-B radiation probably by deesterifying membrane phospholipids. {ECO:0000269|PubMed:15181214}. ARA:AT2G42690-MONOMER; 3.1.1.- 46057 Phospholipase A1-IIdelta (EC 3.1.1.-) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; cellular response to UV-B [GO:0071493]; lipid catabolic process [GO:0016042]; UV protection [GO:0009650] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques, and, at low levels, in seeds and roots (at protein level). {ECO:0000269|PubMed:15181214}. locus:2041599; AT2G42690 phosphatidylcholine 1-acylhydrolase activity Phospholipase A1-II 5 (EC 3.1.1.-) Q5NAI4 PLA5_ORYSJ Os01g0710700 LOC_Os01g51360 OsJ_03214 P0456F08.24 FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ENOG411EKWF DAD1-Like Lipase 3,PLA-I{gamma}1 Q3EBR6,Q941F1,F4INU9,F4HNT5 PLA16_ARATH,PLA15_ARATH,F4INU9_ARATH,F4HNT5_ARATH Phospholipase A1-Igamma2, chloroplastic (EC 3.1.1.-),Phospholipase A1-Igamma1, chloroplastic (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under standard growth phenotype. {ECO:0000269|PubMed:20348210}.,DISRUPTION PHENOTYPE: No visible phenotype under standard growth phenotype. Decreased dinor-12-oxo-phytodienoic acid (dnOPDA) formation. {ECO:0000269|PubMed:20348210}. FUNCTION: Acylhydrolase with a broad specificity. Catalyzes the hydrolysis of phosphatidylcholine at the sn-1 position. Moderate activity toward phosphatidylcholine (PC), monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG) and triacylglycerol (TAG). {ECO:0000269|PubMed:19527719}.,FUNCTION: Acylhydrolase with a broad specificity. Catalyzes the hydrolysis of phosphatidylcholine at the sn-1 position. Moderate activity toward phosphatidylcholine (PC), monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG) and triacylglycerol (TAG). May display dual sn-1/sn-2 substrate specificity. Could be involved in early wound response. {ECO:0000269|PubMed:19527719, ECO:0000269|PubMed:20348210}. ARA:AT2G30550-MONOMER;,ARA:AT1G06800-MONOMER; 3.1.1.- 60402,58445,52802,50184 Phospholipase A1-Igamma2, chloroplastic (EC 3.1.1.-),Phospholipase A1-Igamma1, chloroplastic (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein chloroplast [GO:0009507]; galactolipase activity [GO:0047714]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; triglyceride lipase activity [GO:0004806]; lipid catabolic process [GO:0016042],hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Ubiquitous. Highly expressed in leaves and stems. {ECO:0000269|PubMed:19527719}.,TISSUE SPECIFICITY: Ubiquitous. Highly expressed in leaves. {ECO:0000269|PubMed:19527719}. locus:2064321;,locus:2033066; AT2G30550,AT1G06800 Lipase class 3 family protein Os05g0390000 protein A0A0P0WLY0 A0A0P0WLY0_ORYSJ Os05g0390000 OSNPB_050390000 ENOG411EKWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipase NA NA NA NA NA NA NA ENOG411EKWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKWS O23522 PLA14_ARATH Phospholipase A1-Ibeta2, chloroplastic (EC 3.1.1.-) DISRUPTION PHENOTYPE: No visible phenotype under standard growth phenotype. {ECO:0000269|PubMed:20348210}. FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine at the sn-1 position. Has a strong galactolipase activity toward digalactosyldiacylglycerol (DGDG). Hydrolyzes triacylglycerol (TAG), but has a low activity toward phosphatidylcholine (PC) and monogalactosyldiacylglycerol (MGDG). ARA:AT4G16820-MONOMER; 3.1.1.- 57640 Phospholipase A1-Ibeta2, chloroplastic (EC 3.1.1.-) chloroplast [GO:0009507]; galactolipase activity [GO:0047714]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; triglyceride lipase activity [GO:0004806]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Ubiquitous. Hihgest expression in flowers and seedlings. {ECO:0000269|PubMed:19527719}. locus:2129181; AT4G16820 phospholipase A1-Ibeta2 chloroplastic-like DAD-1 (DAD1) (Os02g0653900 protein) (Putative defective in anther dehiscence1) (cDNA clone:001-039-F10, full insert sequence) (cDNA clone:001-208-A03, full insert sequence),Lipase-like (Os06g0233500 protein),Os10g0562200 protein Q6H8G1,Q67UK0,A0A0P0XXD6 Q6H8G1_ORYSJ,Q67UK0_ORYSJ,A0A0P0XXD6_ORYSJ Os02g0653900 Os02g0653900 OsJ_07769 OSNPB_020653900 P0491E01.40,Os06g0233500 OSJNBb0061B07.3 OSNPB_060233500 P0479H10.37,Os10g0562200 OSNPB_100562200 ENOG411EKWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKWW Q9M8T3 Y2910_ARATH Putative gamma-glutamylcyclotransferase At3g02910 (EC 2.3.2.-) FUNCTION: Putative gamma-glutamylcyclotransferase. {ECO:0000250}. 2.3.2.- 21284 Putative gamma-glutamylcyclotransferase At3g02910 (EC 2.3.2.-) transferase activity, transferring acyl groups [GO:0016746]; response to karrikin [GO:0080167] locus:2075437; AT3G02910 AIG2-like family NA NA NA NA NA NA NA ENOG411EKWV F4JY30,A0A1P8BAJ1,Q93Z64,Q6DBI3,A0A1P8BAH6,F4JY28 F4JY30_ARATH,A0A1P8BAJ1_ARATH,Q93Z64_ARATH,Q6DBI3_ARATH,A0A1P8BAH6_ARATH,F4JY28_ARATH Alpha/beta-Hydrolases superfamily protein,AT5g18630/T1A4_10 (Alpha/beta-Hydrolases superfamily protein) (Putative triacylglycerol lipase) (Triacylglycerol lipase-like protein),Alpha/beta-Hydrolases superfamily protein (At5g18630) ARA:AT5G18630-MONOMER; 40234,41680,40616,40673,32351,32552 Alpha/beta-Hydrolases superfamily protein,AT5g18630/T1A4_10 (Alpha/beta-Hydrolases superfamily protein) (Putative triacylglycerol lipase) (Triacylglycerol lipase-like protein),Alpha/beta-Hydrolases superfamily protein (At5g18630) hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2180064;,locus:2180054; AT5G18640,AT5G18630 Lipase class 3 family protein NA NA NA NA NA NA NA ENOG411EG84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1802) NA NA NA NA NA NA NA ENOG411EHEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EG8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EG8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1BT Q9LVA7 ICLN_ARATH Chloride conductance regulatory protein ICln (I(Cln)) (Chloride ion current inducer protein) (ClCI) FUNCTION: May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway. {ECO:0000250}. 25603 Chloride conductance regulatory protein ICln (I(Cln)) (Chloride ion current inducer protein) (ClCI) cytosol [GO:0005829]; methylosome [GO:0034709]; nucleus [GO:0005634]; pICln-Sm protein complex [GO:0034715]; plasma membrane [GO:0005886]; cell volume homeostasis [GO:0006884]; chloride transport [GO:0006821]; spliceosomal snRNP assembly [GO:0000387] locus:2167918; AT5G62290 nucleotide-sensitive chloride conductance regulator Nucleotide-sensitive chloride conductance regulator family protein, expressed (Os10g0170000 protein) (cDNA clone:J033105N05, full insert sequence),Nucleotide-sensitive chloride conductance regulator family protein, expressed (Os03g0249300 protein) (cDNA clone:J023044M21, full insert sequence) Q10A23,Q10P28 Q10A23_ORYSJ,Q10P28_ORYSJ LOC_Os10g08879 Os10g0170000 OsJ_30846 OSNPB_100170000,Os03g0249300 LOC_Os03g14520 Os03g0249300 OsJ_10144 OSNPB_030249300 ENOG411E1BV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0438300 protein) (cDNA clone:J013118K05, full insert sequence) Q2QS66 Q2QS66_ORYSJ Os12g0438300 LOC_Os12g25170 Os12g0438300 OsJ_35961 OSNPB_120438300 ENOG411E1BW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0106900 protein (Serine/threonine-specific receptor protein kinase-like protein) Q6ETC7 Q6ETC7_ORYSJ Os02g0106900 Os02g0106900 OJ1359_D06.30 OSNPB_020106900 P0017C12.1 ENOG411E1BP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme AMP-binding enzyme family protein, expressed (Os03g0305100 protein) Q10MK9 Q10MK9_ORYSJ Os03g0305100 LOC_Os03g19250 Os03g0305100 OSNPB_030305100 ENOG411E1BQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Expressed protein (Os10g0365800 protein) (cDNA clone:J023002G01, full insert sequence),Os10g0365300 protein,Os03g0697333 protein,Os03g0697600 protein,Os03g0697833 protein,Os08g0535100 protein,Os10g0343951 protein,Os04g0177500 protein Q339E0,A0A0N7KRN7,A0A0P0W2G2,A0A0P0W1S1,A0A0P0W2I7,A0A0N7KQ75,A0A0N7KRM4,A0A0P0W6Z0 Q339E0_ORYSJ,A0A0N7KRN7_ORYSJ,A0A0P0W2G2_ORYSJ,A0A0P0W1S1_ORYSJ,A0A0P0W2I7_ORYSJ,A0A0N7KQ75_ORYSJ,A0A0N7KRM4_ORYSJ,A0A0P0W6Z0_ORYSJ Os10g0365800 LOC_Os10g22100 Os10g0365800 OSNPB_100365800,Os10g0365300 OSNPB_100365300,Os03g0697333 OSNPB_030697333,Os03g0697600 OSNPB_030697600,Os03g0697833 OSNPB_030697833,Os08g0535100 OSNPB_080535100,Os10g0343951 OSNPB_100343951,Os04g0177500 OSNPB_040177500 ENOG411E1BX Q9ZQN7,F4I9C1 Q9ZQN7_ARATH,F4I9C1_ARATH Homeodomain-like superfamily protein (Uncharacterized protein At2g35640),Hydroxyproline-rich glycoprotein family protein 38305,42589 Homeodomain-like superfamily protein (Uncharacterized protein At2g35640),Hydroxyproline-rich glycoprotein family protein DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2058718;,locus:2197490; AT2G35640,AT1G31310 NA OSJNBa0043A12.37 protein (Os04g0670900 protein) (Putative shattering protein) (Trihelix-type transcription factor) Q7XR48 Q7XR48_ORYSJ sh4 SH3 Os04g0670900 OSJNBa0043A12.37 OSNPB_040670900 ENOG411E1BY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0678100 protein Q653T7 Q653T7_ORYSJ Os06g0678100 Os06g0678100 B1153E06.38 OSNPB_060678100 P0710B08.32 ENOG411E1BZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA COBW domain-containing protein OSJNBa0083N12.6 protein (Os04g0599700 protein) (cDNA clone:J013002J04, full insert sequence) Q7XPT4 Q7XPT4_ORYSJ Os04g0599700 OsJ_16026 OSJNBa0083N12.6 OSNPB_040599700 ENOG411E1BD WIP3 Q94AV5,A0A1I9LSR4 WIP3_ARATH,A0A1I9LSR4_ARATH WPP domain-interacting protein 3,WPP domain interacting protein 3 Both endogenous RanGAP1 and RanGAP1-GFP were absent from the nuclear envelope in root-tip cells of the triple mutant.,Mutant plants had no observable defect in growth or development under standard laboratory conditions and no change in auxin sensitivity was observed in a standard root-elongation assay.,When tested by immunofluorescence for RanGAP1 localization no difference from wild-type plants was detected. FUNCTION: Mediates and enhances the nuclear envelope docking of RANGAP proteins mediated by WIT1 and WIT2 in the undifferentiated cells of root tips (PubMed:17600715). As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (PubMed:25759303). {ECO:0000269|PubMed:17600715, ECO:0000269|PubMed:25759303}. 50274,56672 WPP domain-interacting protein 3,WPP domain interacting protein 3 integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; nucleus organization [GO:0006997],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: First observed in roots and cotyledons of young developing seedlings. Later confined to root tips and cauline leaves tips. In flowers, detected in the stamens and at the senescence region of developing siliques. {ECO:0000269|PubMed:17600715}. TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269|PubMed:17600715}. locus:2088170; AT3G13360 NA OSJNBa0089K21.10 protein (Os04g0471300 protein) (cDNA clone:J023027N05, full insert sequence) Q7XQM6 Q7XQM6_ORYSJ Os04g0471300 Os04g0471300 OSJNBa0089K21.10 OSNPB_040471300 ENOG411E1BF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase Os01g0353400 protein,Os01g0369700 protein (Putative glutathione transferase F4) (cDNA clone:001-121-F03, full insert sequence) (cDNA clone:002-188-H01, full insert sequence) (cDNA clone:J033039A11, full insert sequence) Q0JMX6,Q5ZC86 Q0JMX6_ORYSJ,Q5ZC86_ORYSJ Os01g0353400 Os01g0353400 OSNPB_010353400,Os01g0369700 OSNPB_010369700 P0043B10.43 P0493G01.3 ENOG411E1BM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q6Z6C7,Q69X62 Q6Z6C7_ORYSJ,Q69X62_ORYSJ Os02g0205500 Os02g0205500 OSJNBb0056C19.24 OSNPB_020205500 P0544H11.40,Os06g0598800 OsJ_21873 OSNPB_060598800 P0642B07.46 ENOG411E1BN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Putative cyclin-F1-2 (CycF1;2),Putative cyclin-F1-4 (CycF1;4),Putative cyclin-F1-1 (CycF1;1),Putative cyclin-F1-3 (CycF1;3),Os02g0607100 protein (Fragment),Os02g0262500 protein,Os01g0519700 protein,Os02g0607400 protein (Fragment),Os03g0164400 protein (Fragment),Os02g0604800 protein (Fragment),Os08g0340800 protein,Os02g0604600 protein Q6K8S5,Q6K8S3,Q6K1Z1,Q6K8S1,A0A0N7KFN0,A0A0P0VHJ2,A0A0P0V3P7,A0A0P0VLF5,A0A0P0VTG9,A0A0P0VLE5,A0A0P0XES3,A0A0N7KFM7 CCF12_ORYSJ,CCF14_ORYSJ,CCF11_ORYSJ,CCF13_ORYSJ,A0A0N7KFN0_ORYSJ,A0A0P0VHJ2_ORYSJ,A0A0P0V3P7_ORYSJ,A0A0P0VLF5_ORYSJ,A0A0P0VTG9_ORYSJ,A0A0P0VLE5_ORYSJ,A0A0P0XES3_ORYSJ,A0A0N7KFM7_ORYSJ CYCF1-2 Os02g0604600 LOC_Os02g39220 OJ1058_F07.4,CycF1-4 Os02g0604700 LOC_Os02g39230 OJ1058_F07.6 OsJ_007218,CYCF1-1 Os02g0607400 LOC_Os02g39470 OSJNBa0030C08.20,CYCF1-3 Os02g0604800 LOC_Os02g39240 OJ1058_F07.8,Os02g0607100 OSNPB_020607100,Os02g0262500 OSNPB_020262500,Os01g0519700 OSNPB_010519700,Os02g0607400 OSNPB_020607400,Os03g0164400 OSNPB_030164400,Os02g0604800 OSNPB_020604800,Os08g0340800 OSNPB_080340800,Os02g0604600 OSNPB_020604600 ENOG411E1BH PCMP-E30 Q9FG85 PP415_ARATH Pentatricopeptide repeat-containing protein At5g43790 51644 Pentatricopeptide repeat-containing protein At5g43790 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2170877; AT5G43790 Pentatricopeptide repeat-containing protein Os12g0128200 protein (Os12g0128300 protein),Os11g0131400 protein (Fragment) C7JA50,A0A0N7KSD6 C7JA50_ORYSJ,A0A0N7KSD6_ORYSJ Os12g0128200 Os12g0128300 OSNPB_120128200,Os11g0131400 OSNPB_110131400 ENOG411E1BJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Expressed protein (Os12g0637400 protein) (cDNA clone:J023133D10, full insert sequence),Os12g0637200 protein (Fragment) Q2QLL6,A0A0P0YDK3 Q2QLL6_ORYSJ,A0A0P0YDK3_ORYSJ LOC_Os12g44050 Os12g0637400 OSNPB_120637400,Os12g0637200 OSNPB_120637200 ENOG411E1BK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411DWQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-isomer specific 2-hydroxyacid dehydrogenase catalytic domain NA NA NA NA NA NA NA ENOG411E1B3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain Os05g0545000 protein (cDNA clone:J013052B04, full insert sequence),Os05g0545000 protein (Fragment) Q65X38,A0A0P0WQE9 Q65X38_ORYSJ,A0A0P0WQE9_ORYSJ Os05g0545000 Os05g0545000 OJ1206_C08.12 OSNPB_050545000,Os05g0545000 OSNPB_050545000 ENOG411E1B8 HMGB9 Q9SGS2 HMGB9_ARATH High mobility group B protein 9 (Nucleosome/chromatin assembly factor group D 09) (Nucleosome/chromatin assembly factor group D 9) (Protein NUCLEAR FUSION DEFECTIVE 9) DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. FUNCTION: Binds preferentially DNA with A/T-rich content (PubMed:19053246). Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus (PubMed:16698901). {ECO:0000269|PubMed:16698901, ECO:0000269|PubMed:19053246}. 38774 High mobility group B protein 9 (Nucleosome/chromatin assembly factor group D 09) (Nucleosome/chromatin assembly factor group D 9) (Protein NUCLEAR FUSION DEFECTIVE 9) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in leaves, flowers and seedlings. {ECO:0000269|PubMed:19053246}. locus:2199824; AT1G76110 high mobility group Os09g0544500 protein A0A0P0XPV0 A0A0P0XPV0_ORYSJ Os09g0544500 OSNPB_090544500 ENOG411E1B9 FIT,FRU Q0V7X4,A0A1P8AYH9 FIT_ARATH,A0A1P8AYH9_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (Basic helix-loop-helix protein 29) (AtbHLH29) (bHLH 29) (FER-LIKE REGULATOR OF IRON UPTAKE) (Transcription factor EN 43) (Transcription factor Fe-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1) (bHLH transcription factor bHLH029),FER-like regulator of iron uptake Seedlings are chlorotic consistent with iron starvation are smaller than their wildtype counterparts and die 2 to 3 weeks post-germination. Watering with supplemental iron overcomes lethality. Roots contain less iron than wt. Seedling lethal without exogenous iron-M. Guerinot-2004 FUNCTION: Transcription factor. Essential protein involved in iron uptake responses. Regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation. Confers enhanced iron mobilization responses at low iron supply. {ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:16117851}. 35520,34633 Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (Basic helix-loop-helix protein 29) (AtbHLH29) (bHLH 29) (FER-LIKE REGULATOR OF IRON UPTAKE) (Transcription factor EN 43) (Transcription factor Fe-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1) (bHLH transcription factor bHLH029),FER-like regulator of iron uptake nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; regulation of iron ion transport [GO:0034756]; regulation of transcription, DNA-templated [GO:0006355]; response to iron ion [GO:0010039]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed in roots and inflorescence, and to a lower extent, in leaves and stems. In roots, confined to the outer cell layers, specifically in the differentiation zone. Also detected in the endodermis and inner tissues of the central cylinder. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641}. locus:2046198; AT2G28160 transcription factor Os04g0381700 protein A0A0N7KIY3 A0A0N7KIY3_ORYSJ Os04g0381700 OSNPB_040381700 ENOG411EKU4 F9K21.200 Q9M1E5,F4J6P6 Q9M1E5_ARATH,F4J6P6_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At3g45620) (Uncharacterized protein At3g45620/F9K21_200) (Uncharacterized protein F9K21.200),Transducin/WD40 repeat-like superfamily protein R-ATH-8951664; 54019,58018 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At3g45620) (Uncharacterized protein At3g45620/F9K21_200) (Uncharacterized protein F9K21.200),Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2085602; AT3G45620 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotidyltransferase family protein, putative, expressed (Os11g0114700 protein) (cDNA clone:J013072K15, full insert sequence),Os12g0114200 protein (Fragment),Os11g0114700 protein (Fragment) Q2RBE2,A0A0P0Y6A3,A0A0P0XYF3 Q2RBE2_ORYSJ,A0A0P0Y6A3_ORYSJ,A0A0P0XYF3_ORYSJ LOC_Os11g02320 Os11g0114700 OsJ_32709 OSNPB_110114700,Os12g0114200 OSNPB_120114200,Os11g0114700 OSNPB_110114700 ENOG411EKU1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotidyltransferase domain NA NA NA NA NA NA NA ENOG411E9B8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0700500 protein,Os07g0196700 protein A0A0P0W2K6,A0A0P0X3X6 A0A0P0W2K6_ORYSJ,A0A0P0X3X6_ORYSJ Os03g0700500 OSNPB_030700500,Os07g0196700 OSNPB_070196700 ENOG411E9B7 ARAC1,ARAC11,ARAC3,ARAC5,ARAC4,ARAC6 Q38902,P92978,Q38912,Q38937,Q38919,Q9SBJ6 RAC1_ARATH,RAC11_ARATH,RAC3_ARATH,RAC5_ARATH,RAC4_ARATH,RAC6_ARATH Rac-like GTP-binding protein ARAC1 (GTPase protein ROP3),Rac-like GTP-binding protein ARAC11 (GTPase protein ROP1),Rac-like GTP-binding protein ARAC3 (GTPase protein ROP6),Rac-like GTP-binding protein ARAC5 (GTPase protein ROP4),Rac-like GTP-binding protein ARAC4 (GTPase protein ROP2),Rac-like GTP-binding protein ARAC6 (GTPase protein ROP5) stomata open faster and the extent of aperture increase is larger in response to light Increased stomatal width and opening rate-Y. Lee-2008 FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}.,FUNCTION: May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes. May regulate callose synthase 1 (CALS1) activity through the interaction with UGT1. {ECO:0000269|PubMed:9765526}.; FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}.,FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. May be involved in cell polarity control during the actin-dependent tip growth of root hairs (PubMed:11387211). SPK1-dependent activation is required for auxin-mediated inhibition of PIN2 internalization during gravitropic responses (PubMed:22683260). {ECO:0000269|PubMed:11387211, ECO:0000269|PubMed:22683260}.,FUNCTION: May be involved in cell polarity control during the actin-dependent tip growth of root hairs. {ECO:0000269|PubMed:11387211}.; FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000269|PubMed:11387211}.,FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of root hairs. May regulate a WAVE complex that activates the Arp2/3 complex. {ECO:0000250, ECO:0000269|PubMed:11971133}.,FUNCTION: May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes. {ECO:0000269|PubMed:10209027, ECO:0000269|PubMed:9765526}.; FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. ARA:AT4G35020-MONOMER; R-ATH-194840; 21530,21619,21728,21777,21636,21571 Rac-like GTP-binding protein ARAC1 (GTPase protein ROP3),Rac-like GTP-binding protein ARAC11 (GTPase protein ROP1),Rac-like GTP-binding protein ARAC3 (GTPase protein ROP6),Rac-like GTP-binding protein ARAC5 (GTPase protein ROP4),Rac-like GTP-binding protein ARAC4 (GTPase protein ROP2),Rac-like GTP-binding protein ARAC6 (GTPase protein ROP5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; spindle [GO:0005819]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; abscisic acid-activated signaling pathway [GO:0009738]; auxin-activated signaling pathway [GO:0009734]; small GTPase mediated signal transduction [GO:0007264],apical part of cell [GO:0045177]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; spindle [GO:0005819]; GTP binding [GO:0005525]; GTPase activating protein binding [GO:0032794]; GTPase activity [GO:0003924]; establishment of vesicle localization [GO:0051650]; pollen tube growth [GO:0009860]; regulation of actin filament depolymerization [GO:0030834]; regulation of actin filament polymerization [GO:0030833]; regulation of exocytosis [GO:0017157]; small GTPase mediated signal transduction [GO:0007264],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; site of polarized growth [GO:0030427]; spindle [GO:0005819]; GDP binding [GO:0019003]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; auxin-activated signaling pathway [GO:0009734]; positive gravitropism [GO:0009958]; regulation of auxin mediated signaling pathway [GO:0010928]; small GTPase mediated signal transduction [GO:0007264],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein kinase binding [GO:0019901]; small GTPase mediated signal transduction [GO:0007264],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell morphogenesis [GO:0000902]; microtubule cytoskeleton organization [GO:0000226]; pollen tube growth [GO:0009860]; regulation of stomatal movement [GO:0010119]; response to light stimulus [GO:0009416]; small GTPase mediated signal transduction [GO:0007264],cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; small GTPase mediated signal transduction [GO:0007264] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:9765526}.,TISSUE SPECIFICITY: Exclusively expressed in mature pollen and pollen tubes. {ECO:0000269|PubMed:9765526}.,TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed at the tip of root hairs. {ECO:0000269|PubMed:11387211, ECO:0000269|PubMed:9765526}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11971133, ECO:0000269|PubMed:9765526}.,TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in mature pollen and pollen tubes. {ECO:0000269|PubMed:10209027, ECO:0000269|PubMed:9765526}. locus:2827916;,locus:2080878;,locus:2131606;,locus:2204380;,locus:2198566;,locus:2125399; AT2G17800,AT3G51300,AT4G35020,AT1G75840,AT1G20090,AT4G35950 RHO Rac-like GTP-binding protein 5 (GTPase protein RacD) (OsRac5),Rac-like GTP-binding protein 6 (GTPase protein RacB) (OsRac6) Q6EP31,Q6ZHA3 RAC5_ORYSJ,RAC6_ORYSJ RAC5 RACD Os02g0834000 LOC_Os02g58730 OJ1282_E10.23-1 OJ1282_E10.23-2 OsJ_09018 P0264G11.2-1 P0264G11.2-2,RAC6 RACB Os02g0120800 LOC_Os02g02840 OJ1020_C02.8 OsJ_05161 OSJNBb0088N06.17 FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. ENOG411E9B0 ORP2A,ORP2B Q940Y1,Q9SU36,A0A1P8B361,A0A1P8B371,A0A1P8B378,A0A1P8B380 ORP2A_ARATH,ORP2B_ARATH,A0A1P8B361_ARATH,A0A1P8B371_ARATH,A0A1P8B378_ARATH,A0A1P8B380_ARATH Oxysterol-binding protein-related protein 2A (OSBP-related protein 2A),Oxysterol-binding protein-related protein 2B (OSBP-related protein 2B),OSBP(Oxysterol binding protein)-related protein 2B FUNCTION: May be involved in the transport of sterols. {ECO:0000250}. R-ATH-192105; 82042,79566,58074,68633,79694,68505 Oxysterol-binding protein-related protein 2A (OSBP-related protein 2A),Oxysterol-binding protein-related protein 2B (OSBP-related protein 2B),OSBP(Oxysterol binding protein)-related protein 2B lipid binding [GO:0008289]; lipid transport [GO:0006869] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16897474}. locus:2127565;,locus:2135580; AT4G22540,AT4G12460 Oxysterol-binding protein NA NA NA NA NA NA NA ENOG411E9B2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9B3 GBF2 P42775 GBF2_ARATH G-box-binding factor 2 (bZIP transcription factor 54) (AtbZIP54) FUNCTION: Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}. 38789 G-box-binding factor 2 (bZIP transcription factor 54) (AtbZIP54) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; glucosinolate metabolic process [GO:0019760]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Found in both light and dark grown leaves. {ECO:0000269|PubMed:1373374}. locus:2124938; AT4G01120 G-box binding protein MFMR NA NA NA NA NA NA NA ENOG411E9BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sterol-sensing domain of SREBP cleavage-activation NA NA NA NA NA NA NA ENOG411E9BH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tricarboxylate carrier NA NA NA NA NA NA NA ENOG411E9BD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA domain (dynein-related subfamily) NA NA NA NA NA NA NA ENOG411E9BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E9BG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411E9BB LBD30 O81323 LBD30_ARATH LOB domain-containing protein 30 (ASYMMETRIC LEAVES 2-like protein 19) (AS2-like protein 19) Segregates 25% embryo lethal (globular arrest).,Segregates embryo lethal phenotype (globular arrest) and reduced seed set.,Reduced fertilityabnormal leaf shapereduced floral organ number loss of apical dominance. Embryo defective; Globular-R. Simon-2007 FUNCTION: Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. MISCELLANEOUS: Plants over-expressing LBD30 have a dwarf and bushy phenotype, with short petioles, curled downward leaves, ectopic shoots from the adaxial side of cotyledons, shrunken root tips and disorganized columella cells. {ECO:0000269|PubMed:19088331}. 23968 LOB domain-containing protein 30 (ASYMMETRIC LEAVES 2-like protein 19) (AS2-like protein 19) organ boundary specification between lateral organs and the meristem [GO:0010199]; xylem development [GO:0010089] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}. locus:2126881; AT4G00220 jagged lateral organs NA NA NA NA NA NA NA ENOG411E9BC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caspase domain Os05g0496400 protein A0A0P0WP05 A0A0P0WP05_ORYSJ Os05g0496400 OSNPB_050496400 ENOG411DYS0 TIC110 Q8LPR9 TI110_ARATH Protein TIC110, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 110) (AtTIC110) DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:15829604}. Embryo defective; Globular; Heterozygotes: Pale green; Chlorotic-P. Jarvis-2007 FUNCTION: Involved in protein precursor import into chloroplasts. Forms a voltage-dependent cation-selective channel at the inner envelope of chloroplasts, which specifically responds to a transit peptide. Associates with both the precursor and mature forms of the preprotein. {ECO:0000269|PubMed:12032074, ECO:0000269|PubMed:12874276, ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:15829604}. MISCELLANEOUS: The region 143-1016 is indicated to be located in the stroma (PubMed:12874276, PubMed:9632730) while the homologous region in pea TIC110 contains probably 4 trans-membrane domains resulting in 2 regions in the intermembrane space localized to form supercomplexes with the TOC machinery and to receive the transit peptide of preproteins. {ECO:0000305|PubMed:12874276, ECO:0000305|PubMed:9632730}.; MISCELLANEOUS: Inserts into the inner envelope membrane from the stroma after import from the cytoplasm. 112121 Protein TIC110, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 110) (AtTIC110) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; Tic complex [GO:0031897]; chloroplast organization [GO:0009658]; protein import into chloroplast stroma [GO:0045037] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:15659100}. TISSUE SPECIFICITY: Expressed in seedlings, flowers, leaves, stems and roots. {ECO:0000269|PubMed:15033972, ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:15829604}. locus:2007437; AT1G06950 translocon at the inner envelope membrane of chloroplasts 110 Os10g0492300 protein,Os10g0492101 protein,Os10g0492000 protein (Fragment) Q0IWS0,A0A0P0XW86,A0A0P0XWA7 Q0IWS0_ORYSJ,A0A0P0XW86_ORYSJ,A0A0P0XWA7_ORYSJ Os10g0492300 OSNPB_100492300,Os10g0492101 OSNPB_100492101,Os10g0492000 OSNPB_100492000 ENOG411DYS3 A0A1P8B0S2,O04198,F4IG26 A0A1P8B0S2_ARATH,O04198_ARATH,F4IG26_ARATH Flocculation protein,At2g39950 (Flocculation protein) (Uncharacterized protein At2g39950) 50375,68188,59211 Flocculation protein,At2g39950 (Flocculation protein) (Uncharacterized protein At2g39950) locus:2061146; AT2G39950 NA Os07g0100500 protein (cDNA clone:J013128H10, full insert sequence),Os07g0100500 protein Q69LA4,A0A0P0X1B7 Q69LA4_ORYSJ,A0A0P0X1B7_ORYSJ Os07g0100500 B1026C12.9 OSNPB_070100500,Os07g0100500 OSNPB_070100500 ENOG411DYS4 O64737 O64737_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (Hookless1-like protein) 43918 Acyl-CoA N-acyltransferases (NAT) superfamily protein (Hookless1-like protein) cytosolic ribosome [GO:0022626]; NatA complex [GO:0031415]; peptide-glutamate-N-acetyltransferase activity [GO:1990190]; peptide-serine-N-acetyltransferase activity [GO:1990189]; internal protein amino acid acetylation [GO:0006475]; N-terminal peptidyl-glutamic acid acetylation [GO:0018002]; N-terminal peptidyl-serine acetylation [GO:0017198] locus:2060874; AT2G30090 GCN5-related N-acetyltransferase (GNAT) family protein NA NA NA NA NA NA NA ENOG411DYS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Xylanase inhibitor protein 2 (Class III chitinase homolog h),Os05g0247800 protein (Putative chitinase) (cDNA clone:J033068H05, full insert sequence),DIP3 (Os05g0247100 protein) (Putative chitinase) (cDNA clone:001-045-C02, full insert sequence),Chitinase (EC 3.2.1.14) (Chitinase III C00481-rice) (Os11g0701200 protein) (Xylanase inhibitor protein 2, putative, expressed) (cDNA clone:J033067D20, full insert sequence),Chitinase (EC 3.2.1.14) (Chitinase III C10150-rice) (NADPH-dependent oxidoreductase) (Os11g0701400 protein) (Xylanase inhibitor protein 2, putative, expressed) (cDNA clone:002-101-E05, full insert sequence),Glycosyl hydrolases family 18 (Os11g0701500 protein) (Xylanase inhibitor protein 2, putative, expressed) (cDNA clone:001-007-B10, full insert sequence),Os05g0248200 protein (cDNA, clone: J065093C08, full insert sequence),Os08g0518800 protein (Fragment),Os11g0701100 protein (Fragment),Os11g0701600 protein (Fragment),Os05g0247100 protein (Fragment) Q53NL5,Q5WMW5,Q5WMX0,O49824,O49826,Q53NL2,Q0DJN7,Q0J4E6,A0A0P0Y5V8,A0A0N7KTE2,A0A0P0WJU8 XIP2_ORYSJ,Q5WMW5_ORYSJ,Q5WMX0_ORYSJ,O49824_ORYSJ,O49826_ORYSJ,Q53NL2_ORYSJ,Q0DJN7_ORYSJ,Q0J4E6_ORYSJ,A0A0P0Y5V8_ORYSJ,A0A0N7KTE2_ORYSJ,A0A0P0WJU8_ORYSJ Chib3H-h Os11g0701100 LOC_Os11g47520,Os05g0247800 Os05g0247800 OJ1037_G10.8 OsJ_17793 OSNPB_050247800,dip3 Os05g0247100 OJ1037_G10.2 OsJ_17789 OSJNBa0037H06.16 OSNPB_050247100,Os11g0701200 LOC_Os11g47530 Os11g0701200 OSNPB_110701200,LOC_Os11g47550 Os11g0701400 OSNPB_110701400,LOC_Os11g47560 Os11g0701500 OSNPB_110701500,Os05g0248200 Os05g0248200 OsJ_17795 OSNPB_050248200,Os08g0518800 Os08g0518800 OSNPB_080518800,Os11g0701100 OSNPB_110701100,Os11g0701600 OSNPB_110701600,Os05g0247100 OSNPB_050247100 FUNCTION: Fungal xylanase inhibitor. Possesses competitive inhibiting activity against several fungal endo-1,4-beta-D-xylanases belonging to glycoside hydrolase family 10 (GH10) and family 11 (GH11). May function in plant defense against secreted fungal pathogen xylanases. Is similar to class III chitinases, but does not exhibit chitinase activity. {ECO:0000269|PubMed:15895691}. ENOG411DYS6 A0A1P8BHE6,A0A1P8BHC3,A0A1P8BHE1,F4K5S1,F4K5S0 A0A1P8BHE6_ARATH,A0A1P8BHC3_ARATH,A0A1P8BHE1_ARATH,F4K5S1_ARATH,F4K5S0_ARATH ARM repeat superfamily protein 180627,178840,179344,180484,184051 ARM repeat superfamily protein locus:2143779; AT5G27970 Inherit from KOG: MON2 homolog (S. cerevisiae) Os01g0772700 protein A0A0P0V8Q5 A0A0P0V8Q5_ORYSJ Os01g0772700 OSNPB_010772700 ENOG411DYS7 MOR1 Q94FN2,A0A1P8B2A9,F4IZ00 MOR1_ARATH,A0A1P8B2A9_ARATH,F4IZ00_ARATH Protein MOR1 (Protein GEM1) (Protein GEMINI POLLEN 1) (Protein MICROTUBULE ORGANIZATION 1) (Protein RID5) (Protein ROOT INITIATION DEFECTIVE 5),ARM repeat superfamily protein,Uncharacterized protein DISRUPTION PHENOTYPE: Homozygous lethal in gem1-1 mutant. No visible phenotype under normal growth condition in mor1-1 and mor1-2 mutants, but the restrictive temperature of 29 degrees Celsius causes cortical microtubule shortening and disorganization, left-handed helical growth of root, disrupts microtubule arrays during mitosis and cytokinesis and alters plant morphology and organ development. {ECO:0000269|PubMed:11385579, ECO:0000269|PubMed:12198497, ECO:0000269|PubMed:14522871}. Stronger phenotype than gem1-1. Defects in cell division - particularly in the pollen which leads reduced transmission through pollen in heterozygotes. Sporphytic lethal as homozygote. Male and female gametophyte defective; Homozygotes are viable: Increased percentage of abnormal pollen-D. Twell-1998 FUNCTION: Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. {ECO:0000269|PubMed:11385579, ECO:0000269|PubMed:12198497, ECO:0000269|PubMed:12782733, ECO:0000269|PubMed:14522871, ECO:0000269|PubMed:14617086, ECO:0000269|PubMed:15753108, ECO:0000269|PubMed:16377747, ECO:0000269|PubMed:16608453, ECO:0000269|PubMed:19033380}. MISCELLANEOUS: Aberrant cytokinesis and cell division pattern during pollen mitosis in heterozygous gem1-1 and gem1-2 mutants. 217550,205264,11423 Protein MOR1 (Protein GEM1) (Protein GEMINI POLLEN 1) (Protein MICROTUBULE ORGANIZATION 1) (Protein RID5) (Protein ROOT INITIATION DEFECTIVE 5),ARM repeat superfamily protein,Uncharacterized protein cortical microtubule cytoskeleton [GO:0030981]; kinetochore [GO:0000776]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasmodesma [GO:0009506]; preprophase band [GO:0009574]; spindle [GO:0005819]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; microtubule plus-end binding [GO:0051010]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; cytokinesis by cell plate formation [GO:0000911]; establishment or maintenance of microtubule cytoskeleton polarity [GO:0030951]; microtubule polymerization [GO:0046785]; spindle organization [GO:0007051] TISSUE SPECIFICITY: Expressed in roots, cotyledons, rosette leaves, stems, open flowers and green siliques. {ECO:0000269|PubMed:11385579}. locus:2058739;,locus:2089740; AT2G35630,AT3G28155 Microtubule organization 1 Protein MOR1 (Protein GEM1) (Protein MICROTUBULE ORGANIZATION 1),Os01g0816400 protein (Fragment),Os01g0816500 protein (Fragment) Q5N749,A0A0P0V9R9,A0A0P0V9P2 MOR1_ORYSJ,A0A0P0V9R9_ORYSJ,A0A0P0V9P2_ORYSJ MOR1 Os01g0816400 LOC_Os01g60040 B1148D12.6-1 OsJ_03864 OSJNBa0085D07.49-1,Os01g0816400 OSNPB_010816400,Os01g0816500 OSNPB_010816500 FUNCTION: Microtubule-associated protein that is essential for cortical microtubules organization and function. {ECO:0000250}. ENOG411DYS8 SUC3,SUT2 O80605,F4IRC0 SUC3_ARATH,F4IRC0_ARATH Sucrose transport protein SUC3 (Sucrose permease 3) (Sucrose transporter 2) (Sucrose-proton symporter 3),Sucrose transporter 2 FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Probably involved in carpel maturation that leads to pod shatter and seed dispersal. {ECO:0000269|PubMed:11135120}. PATHWAY: Glycan biosynthesis; sucrose metabolism. R-ATH-189200; 63973,50323 Sucrose transport protein SUC3 (Sucrose permease 3) (Sucrose transporter 2) (Sucrose-proton symporter 3),Sucrose transporter 2 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; sucrose transmembrane transporter activity [GO:0008515]; symporter activity [GO:0015293]; response to wounding [GO:0009611]; sucrose metabolic process [GO:0005985]; sucrose transport [GO:0015770],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Expressed in pollen and pollen tubes, as well as in seed coats. Specific increase of expression in innermost layer cells of the mesocarp (cells located between the outer epidermis (exocarp) and the inner epidermis (endocarp) of the carpel) during carpel maturation (at protein level). Present in suspensor of embryos and in embryos root tips. Absent in very young organs, but levels increase as they mature. {ECO:0000269|PubMed:11135120, ECO:0000269|PubMed:14739351}. TISSUE SPECIFICITY: Mostly localized in parenchymatic cells next to vascular tissues (at protein level). Present in stipules, trichomes, hydathodes and guard cells of source leaves, as well as in lateral root tips and flowers. {ECO:0000269|PubMed:10899981, ECO:0000269|PubMed:11135120, ECO:0000269|PubMed:12689351, ECO:0000269|PubMed:14739351}. locus:2056675; AT2G02860 Sucrose transport protein NA NA NA NA NA NA NA ENOG411DYSQ Q9SZR0 CHMO_ARATH Choline monooxygenase, chloroplastic (EC 1.14.15.7) FUNCTION: Catalyzes the first step of the osmoprotectant glycine betaine synthesis. {ECO:0000250}. PATHWAY: Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (monooxygenase route): step 1/1. ARA:AT4G29890-MONOMER; 1.14.15.7 47724 Choline monooxygenase, chloroplastic (EC 1.14.15.7) chloroplast stroma [GO:0009570]; 2 iron, 2 sulfur cluster binding [GO:0051537]; choline monooxygenase activity [GO:0019133]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor [GO:0016708]; aromatic compound catabolic process [GO:0019439]; glycine betaine biosynthetic process from choline [GO:0019285] locus:2123914; AT4G29890 choline monooxygenase Os06g0698785 protein A0A0P0X0M6 A0A0P0X0M6_ORYSJ Os06g0698785 OSNPB_060698785 ENOG411DYSR MHK7.6 C0Z305,Q9LK30,Q9FKS3 C0Z305_ARATH,Q9LK30_ARATH,Q9FKS3_ARATH AT5G40830 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At3g27230 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At5g40830 (Emb|CAB80933.1) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g40830) 42041,45861,46522 AT5G40830 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At3g27230 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),At5g40830 (Emb|CAB80933.1) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g40830) integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2086543;,locus:2164491; AT3G27230,AT5G40830 Pfam:DUF248 Os06g0138500 protein (Os06g0138600 protein) (cDNA clone:J013068J24, full insert sequence) (cDNA clone:J023022B22, full insert sequence) Q5VPG4 Q5VPG4_ORYSJ Os06g0138600 Os06g0138500 OSJNBa0041F13.15 OSNPB_060138600 ENOG411DYSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:LACT Lecithin-cholesterol acyltransferase-like 1 (EC 2.3.1.-) Q10PI6 LCAT1_ORYSJ Os03g0232800 LOC_Os03g13030 OJ1175C11.13 ENOG411DYST emb1381 F4IQS9 F4IQS9_ARATH Embryo defective 1381 Embryo defective; Transition-D. Meinke-2002 64382 Embryo defective 1381 locus:2061280; AT2G31340 NA Os09g0296400 protein A0A0P0XKW6 A0A0P0XKW6_ORYSJ Os09g0296400 OSNPB_090296400 ENOG411DYSU Q9LNP3 Q9LNP3_ARATH At1g17620/F11A6_23 (F1L3.32) (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein At1g17620) 28288 At1g17620/F11A6_23 (F1L3.32) (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein At1g17620) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2007968; AT1G17620 Late embryogenesis abundant protein Os05g0199100 protein (cDNA clone:J013170B15, full insert sequence) Q60E41 Q60E41_ORYSJ Os05g0199100 OSJNBa0007C23.12 OSNPB_050199100 ENOG411DYSV F9L11.1 Q9T0B9,Q9MAQ7 Q9T0B9_ARATH,Q9MAQ7_ARATH RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein AT4g10600) (Uncharacterized protein T4F9.60),Location of EST 206I21T7, gb|N37185 (RING/FYVE/PHD zinc finger superfamily protein) 26792,117549 RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein AT4g10600) (Uncharacterized protein T4F9.60),Location of EST 206I21T7, gb|N37185 (RING/FYVE/PHD zinc finger superfamily protein) metal ion binding [GO:0046872] locus:2139232;,locus:2038021; AT4G10600,AT1G32810 PHD Os04g0221600 protein (Fragment) A0A0P0W885 A0A0P0W885_ORYSJ Os04g0221600 OSNPB_040221600 ENOG411DYSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os07g0563600 protein (Putative far-red impaired response protein) Q8H344 Q8H344_ORYSJ OJ1720_F04.111 Os07g0563600 OSNPB_070563600 ENOG411DYSX Q9LJQ6,Q683K3,A0A1P8B5A6 Q9LJQ6_ARATH,Q683K3_ARATH,A0A1P8B5A6_ARATH AT3G18240 protein (AT3g18240) (Ribosomal protein S24/S35) (Uncharacterized protein At3g18240),Ribosomal protein S24/S35 (Uncharacterized protein At4g21460),Ribosomal protein S24/S35 48053,47554,49176 AT3G18240 protein (AT3g18240) (Ribosomal protein S24/S35) (Uncharacterized protein At3g18240),Ribosomal protein S24/S35 (Uncharacterized protein At4g21460),Ribosomal protein S24/S35 cytosol [GO:0005829]; mitochondrial small ribosomal subunit [GO:0005763]; nucleus [GO:0005634]; structural constituent of ribosome [GO:0003735],mitochondrial small ribosomal subunit [GO:0005763]; structural constituent of ribosome [GO:0003735],ribosome [GO:0005840] locus:2089653;,locus:2119637; AT3G18240,AT4G21460 Mitochondrial ribosomal subunit protein Os08g0513300 protein (cDNA clone:J013162F01, full insert sequence) Q6Z8N1 Q6Z8N1_ORYSJ Os08g0513300 OsJ_27916 OSNPB_080513300 P0711H09.20 ENOG411DYSY TAF1B,TAF1,HAF2 Q6PUA2,Q8LRK9,A0A1I9LSR7 TAF1B_ARATH,TAF1_ARATH,A0A1I9LSR7_ARATH Transcription initiation factor TFIID subunit 1b (TAFII250-B) (TBP-associated factor 1b) (AtTAF1b) (Transcription initiation factor TFIID subunit 1-B),Transcription initiation factor TFIID subunit 1 (TAFII250-A) (TBP-associated factor 1) (AtTAF1) (Transcription initiation factor TFIID subunit 1-A),Histone acetyltransferase of the TAFII250 family 2 DISRUPTION PHENOTYPE: Plants show reduced acetylation of histone H3 in light-responsive promoters, decreased chlorophyll accumulation and altered expression of about 9% of genes in young leaves. {ECO:0000269|PubMed:15527982}. Cotyledons of seven day old plants are paler than those of Col-0 with a 35-40% and 50% reduction in chlorophyll a and chlorophyll b contents compared with Col-0. Induction of expression of light responsive genes RBCS-1A and CAB2 during germination is seriously impaired.,Cotyledons of seven day old plants are paler than those of Ws with a 35-40% and 50% reduction in chlorophyll a and chlorophyll b contents compared with Ws. Newly produced youg leaves and shoots are yellowish. During expansion the leaves become gradually greener from the base to the distal end. Induction of expression of light responsive genes RBCS-1A and CAB2 during germination is seriously impaired. Pale green cotyledons; Yellow early leaves-D. Zhou-2005 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Core scaffold of the TFIID complex. Acts as a histone acetyltransferase involved in the light regulation of growth and gene expression. Required for H3K9, H3K27, and H4K12 acetylation on the target promoters. {ECO:0000269|PubMed:15525647, ECO:0000269|PubMed:17085686}.,FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Core scaffold of the TFIID complex (By similarity). {ECO:0000250}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 202252,217194,202815 Transcription initiation factor TFIID subunit 1b (TAFII250-B) (TBP-associated factor 1b) (AtTAF1b) (Transcription initiation factor TFIID subunit 1-B),Transcription initiation factor TFIID subunit 1 (TAFII250-A) (TBP-associated factor 1) (AtTAF1) (Transcription initiation factor TFIID subunit 1-A),Histone acetyltransferase of the TAFII250 family 2 membrane [GO:0016020]; transcription factor TFIID complex [GO:0005669]; histone acetyltransferase activity [GO:0004402]; RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly [GO:0001129]; sequence-specific DNA binding [GO:0043565]; TBP-class protein binding [GO:0017025]; transcription cofactor activity [GO:0003712]; histone acetylation [GO:0016573]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; response to light stimulus [GO:0009416],transcription factor TFIID complex [GO:0005669]; histone acetyltransferase activity [GO:0004402]; RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly [GO:0001129]; sequence-specific DNA binding [GO:0043565]; TBP-class protein binding [GO:0017025]; DNA mediated transformation [GO:0009294]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944],transferase activity [GO:0016740] TISSUE SPECIFICITY: Expressed in roots, shoots, leaves and inflorescences. {ECO:0000269|PubMed:15525647, ECO:0000269|PubMed:15527982}.,TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2085909;,locus:2035574; AT3G19040,AT1G32750 transcription initiation factor TFIID subunit Transcription initiation factor TFIID subunit 1 (TAFII250),Os06g0645700 protein (Fragment),Os06g0645800 protein (Fragment),Os06g0645901 protein (Fragment) Q67W65,Q0DAL5,C7J4C7,A0A0P0WZS5 TAF1_ORYSJ,Q0DAL5_ORYSJ,C7J4C7_ORYSJ,A0A0P0WZS5_ORYSJ TAF1 Os06g0645700 LOC_Os06g43790 OJ1226_A12.6 P0017B12.32,Os06g0645700 Os06g0645700 OSNPB_060645700,Os06g0645800 Os06g0645800 OSNPB_060645800,Os06g0645901 OSNPB_060645901 FUNCTION: Largest component and core scaffold of the TFIID basal transcription factor complex. {ECO:0000250}. ENOG411DYSZ PCMP-E78,MEF21 Q9SIL5,A0A1P8B0F7 PP165_ARATH,A0A1P8B0F7_ARATH Pentatricopeptide repeat-containing protein At2g20540,Mitochondrial editing factor 21 60880,57487 Pentatricopeptide repeat-containing protein At2g20540,Mitochondrial editing factor 21 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2054789; AT2G20540 Pentatricopeptide repeat-containing protein Os05g0439300 protein (Putative pentatricopeptide repeat-containing protein) (cDNA, clone: J100062A03, full insert sequence) Q75HW7 Q75HW7_ORYSJ Os05g0439300 OSJNBb0042J17.15 OSNPB_050439300 ENOG411DYSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc Probable protein phosphatase 2C 38 (OsPP2C38) (EC 3.1.3.16),Os04g0321800 protein (Fragment) Q7XW27,A0A0P0W934 P2C38_ORYSJ,A0A0P0W934_ORYSJ Os04g0321800 LOC_Os04g25570 OSJNBb0062H02.4,Os04g0321800 OSNPB_040321800 ENOG411DYSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q67UZ8 Q67UZ8_ORYSJ Os09g0452900 Os09g0452900 OsJ_29598 OSNPB_090452900 P0488D02.17 ENOG411DYSC Q9SZ98 Q9SZ98_ARATH Nuclear receptor family 2 group C protein (Uncharacterized protein At4g09830) (Uncharacterized protein F17A8.180) 21071 Nuclear receptor family 2 group C protein (Uncharacterized protein At4g09830) (Uncharacterized protein F17A8.180) locus:2118529; AT4G09830 NA Os09g0360400 protein (Putative holocarboxylase synthetase) (cDNA clone:J023095O09, full insert sequence),Os08g0397900 protein (Putative holocarboxylase synthetase) (cDNA clone:006-308-D12, full insert sequence) (cDNA clone:J013089E18, full insert sequence),Os08g0397900 protein (Putative holocarboxylase synthetase) (cDNA clone:002-148-A02, full insert sequence) Q6K559,Q6ZIW2,Q5QLN8 Q6K559_ORYSJ,Q6ZIW2_ORYSJ,Q5QLN8_ORYSJ Os09g0360400 Os09g0360400 OsJ_29059 OSNPB_090360400 P0711F01.39,Os08g0397900 OJ1198_B10.8-2 OsJ_27204 OSNPB_080397900,Os08g0397900 OJ1198_B10.8-1 OSNPB_080397900 ENOG411DYSD B3H5W6,Q8W553,B3H745,A0A1P8BH65,F4JYC1 B3H5W6_ARATH,Q8W553_ARATH,B3H745_ARATH,A0A1P8BH65_ARATH,F4JYC1_ARATH AT5G35180 protein (ENHANCED DISEASE RESISTANCE protein (DUF1336)),AT5g35180/T25C13_60 (ENHANCED DISEASE RESISTANCE protein (DUF1336)) (Uncharacterized protein At5g35180),ENHANCED DISEASE RESISTANCE protein (DUF1336) 86999,87029,66733,87549,90932 AT5G35180 protein (ENHANCED DISEASE RESISTANCE protein (DUF1336)),AT5g35180/T25C13_60 (ENHANCED DISEASE RESISTANCE protein (DUF1336)) (Uncharacterized protein At5g35180),ENHANCED DISEASE RESISTANCE protein (DUF1336) lipid binding [GO:0008289],plasma membrane [GO:0005886]; lipid binding [GO:0008289] locus:2182417; AT5G35180 Protein of unknown function (DUF1336) Os08g0439100 protein (cDNA clone:J013102K12, full insert sequence) Q6Z9J1 Q6Z9J1_ORYSJ Os08g0439100 OSNPB_080439100 P0524F03.11 ENOG411DYSE ATHB-6 P46668 ATHB6_ARATH Homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein ATHB-6) (Homeodomain transcription factor ATHB-6) FUNCTION: Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. 35018 Homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein ATHB-6) (Homeodomain transcription factor ATHB-6) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; positive regulation of transcription, DNA-templated [GO:0045893]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}. locus:2041283; AT2G22430 homeobox-leucine zipper protein NA NA NA NA NA NA NA ENOG411DYSF FAP1 Q9M1X2 FAP1_ARATH Fatty-acid-binding protein 1 (AtFAP1) (Chalcone-flavanone isomerase family protein 1) DISRUPTION PHENOTYPE: No visible phenotype during vegetative growth, but shorter siliques containing a reduced number of viable seeds. Elevated total fatty-acid levels in leaves and seeds of plants grown at 15 and 22 degrees Celsius. {ECO:0000269|PubMed:22622584}. FUNCTION: Fatty-acid-binding protein. Interacts preferentially with saturated fatty acid. May be involved in alpha-linolenic (C18:3) metabolism. 30394 Fatty-acid-binding protein 1 (AtFAP1) (Chalcone-flavanone isomerase family protein 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid [GO:0009536]; chalcone isomerase activity [GO:0045430]; fatty acid binding [GO:0005504]; fatty acid metabolic process [GO:0006631]; flavonoid biosynthetic process [GO:0009813] TISSUE SPECIFICITY: Expressed in developing cotyledons, young seedlings, roots, seeds, embryos, macrospores, preanthesis and tapetum. Restricted to developing and reproductive tissues. {ECO:0000269|PubMed:22622584}. locus:2077229; AT3G63170 Chalcone-flavanone isomerase Os07g0571600 protein Q0D5A7 Q0D5A7_ORYSJ Os07g0571600 Os07g0571600 OSNPB_070571600 ENOG411DYSG Q9C8T7,Q9CAM8,Q9SH60,Q9SH26,Q9SXD1,Q9LQ15,Q9CAN6,Q9LQ16,Q9LQ14,Q9CAN5,Q9SXD8,Q9CAN0,Q6DR07,F4I221,F4J555,F4I3N7,A8MRJ8 PP101_ARATH,PP100_ARATH,PP103_ARATH,PP102_ARATH,PPR91_ARATH,PPR95_ARATH,PPR97_ARATH,PPR94_ARATH,PPR96_ARATH,PPR98_ARATH,PPR90_ARATH,PPR99_ARATH,Q6DR07_ARATH,F4I221_ARATH,F4J555_ARATH,F4I3N7_ARATH,A8MRJ8_ARATH Pentatricopeptide repeat-containing protein At1g63330,Pentatricopeptide repeat-containing protein At1g63150,Pentatricopeptide repeat-containing protein At1g64100,Pentatricopeptide repeat-containing protein At1g63400,Pentatricopeptide repeat-containing protein At1g62670, mitochondrial,Pentatricopeptide repeat-containing protein At1g62914, mitochondrial,Pentatricopeptide repeat-containing protein At1g63070, mitochondrial,Pentatricopeptide repeat-containing protein At1g62910,Pentatricopeptide repeat-containing protein At1g62930, chloroplastic,Pentatricopeptide repeat-containing protein At1g63080, mitochondrial,Pentatricopeptide repeat-containing protein At1g62590,Pentatricopeptide repeat-containing protein At1g63130, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein,Pentatricopeptide repeat (PPR) superfamily protein,Pentatricopeptide (PPR) repeat-containing protein 62850,70790,75019,64952,70846,59336,66072,70983,70923,68848,70862,70969,17128,20950,23905,30932,91894 Pentatricopeptide repeat-containing protein At1g63330,Pentatricopeptide repeat-containing protein At1g63150,Pentatricopeptide repeat-containing protein At1g64100,Pentatricopeptide repeat-containing protein At1g63400,Pentatricopeptide repeat-containing protein At1g62670, mitochondrial,Pentatricopeptide repeat-containing protein At1g62914, mitochondrial,Pentatricopeptide repeat-containing protein At1g63070, mitochondrial,Pentatricopeptide repeat-containing protein At1g62910,Pentatricopeptide repeat-containing protein At1g62930, chloroplastic,Pentatricopeptide repeat-containing protein At1g63080, mitochondrial,Pentatricopeptide repeat-containing protein At1g62590,Pentatricopeptide repeat-containing protein At1g63130, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein,Pentatricopeptide repeat (PPR) superfamily protein,Pentatricopeptide (PPR) repeat-containing protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397]; RNA 5'-end processing [GO:0000966],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],mitochondrion [GO:0005739]; adenylate cyclase activity [GO:0004016]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2038483;,locus:2015213;,locus:2024537;,locus:2031301;,locus:2026192;,locus:6530298165;,locus:2015218;,locus:2015549;,locus:2015494;,locus:2015228;,locus:2203916;,locus:2015208;,locus:2038426;,locus:2089025;,locus:2026654; AT1G63330,AT1G63150,AT1G64100,AT1G63400,AT1G62670,AT1G62914,AT1G63070,AT1G62910,AT1G62930,AT1G63080,AT1G62590,AT1G63130,AT1G63630,AT1G63320,AT3G17370 Pentatricopeptide repeat-containing protein Os10g0497300 protein (cDNA clone:J013000A16, full insert sequence),Os10g0499500 protein (Pentatricopeptide repeat-containing protein) (Rf1 protein, mitochondrial, putative, expressed) (cDNA clone:J013020B09, full insert sequence) (cDNA clone:J023011K09, full insert sequence),Fertility restorer (Os10g0497432 protein) (Os10g0497450 protein) (Pentatricopeptide repeat-containing protein),Os08g0110200 protein (Putative PPR protein),Os10g0495200 protein (PPR protein PPR9-782-ZH) (Rf1 protein, mitochondrial, putative, expressed),Os08g0107800 protein (Putative PPR protein) (cDNA clone:J023069E09, full insert sequence),Os10g0493100 protein (Fragment) Q76C22,Q8LNH0,Q76C20,Q6ZC60,Q337H7,Q6ZD66,A0A0P0XVN4 Q76C22_ORYSJ,Q8LNH0_ORYSJ,Q76C20_ORYSJ,Q6ZC60_ORYSJ,Q337H7_ORYSJ,Q6ZD66_ORYSJ,A0A0P0XVN4_ORYSJ Os10g0497300 Os10g0497300 OSNPB_100497300,rf1b LOC_Os10g35640 Os10g0499500 OsJ_32049 OSJNBa0078O01.20 OSNPB_100499500,rf-1 Os10g0497432 rf1a Os10g0497450 OSNPB_100497432,Os08g0110200 Os08g0110200 OsJ_25782 OSNPB_080110200 P0007D08.28,Rf4 LOC_Os10g35240 Os10g0495200 OSNPB_100495200,Os08g0107800 OSNPB_080107800 P0450B04.28,Os10g0493100 OSNPB_100493100 ENOG411DYSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAP10 Os08g0101800 protein Q6Z1Y8 Q6Z1Y8_ORYSJ Os08g0101800 B1147B12.20 OsJ_25724 OSNPB_080101800 P0015C07.3 ENOG411DYSJ Q949Z2,Q9SFF8 Q949Z2_ARATH,Q9SFF8_ARATH AT5G26740 protein (Organic solute transporter ostalpha protein (DUF300)) (Uncharacterized protein At5g26734),At3g05940 (F2O10.10 protein) (Organic solute transporter ostalpha protein (DUF300)) (Uncharacterized protein At3g05940) 46997,47339 AT5G26740 protein (Organic solute transporter ostalpha protein (DUF300)) (Uncharacterized protein At5g26734),At3g05940 (F2O10.10 protein) (Organic solute transporter ostalpha protein (DUF300)) (Uncharacterized protein At3g05940) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transport [GO:0006810] locus:2146799;,locus:2074504; AT5G26740,AT3G05940 Pfam:DUF300 NA NA NA NA NA NA NA ENOG411DYSK EGY2 Q9FFK3,F4K0T7,F4K0T6 EGY2_ARATH,F4K0T7_ARATH,F4K0T6_ARATH Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2),Ethylene-dependent gravitropism-deficient and yellow-green-like 2 FUNCTION: Probable membrane-associated metalloprotease that may be involved in chloroplast development. {ECO:0000250}. 3.4.24.- 60064,56802,56400 Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2),Ethylene-dependent gravitropism-deficient and yellow-green-like 2 chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; metallopeptidase activity [GO:0008237],integral component of membrane [GO:0016021] locus:2166389; AT5G05740 Peptidase family M50 Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2) (OsEGY2),Os01g0142100 protein (Fragment) Q0JQS5,A0A0P0UY68 EGY2_ORYSJ,A0A0P0UY68_ORYSJ EGY2 Os01g0142100 LOC_Os01g04900 OsJ_00322 P0019D06.11,Os01g0142100 OSNPB_010142100 FUNCTION: Probable membrane-associated metalloprotease that may be involved in chloroplast development. {ECO:0000250}. ENOG411DYSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc NA NA NA NA NA NA NA ENOG411DYSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA galactosyl transferase GMA12/MNN10 family Probable glycosyltransferase 3 (OsGT3) (EC 2.4.-.-),Os12g0149300 protein (Fragment) Q2QXP0,A0A0P0Y765 GT3_ORYSJ,A0A0P0Y765_ORYSJ GT3 Os12g0149300 LOC_Os12g05380 OsJ_35230,Os12g0149300 OSNPB_120149300 FUNCTION: Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q10MQ0}. ENOG411EDIW F15B8.50 Q9SVZ0 Q9SVZ0_ARATH At3g57760/F15B8_50 (Protein kinase superfamily protein) (Uncharacterized protein F15B8.50) 43084 At3g57760/F15B8_50 (Protein kinase superfamily protein) (Uncharacterized protein F15B8.50) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2076631; AT3G57760 kinase family NA NA NA NA NA NA NA ENOG411EA56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411E42U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor Os03g0809200 protein (Fragment) Q0DMG8 Q0DMG8_ORYSJ Os03g0809200 OSNPB_030809200 ENOG411E42T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase A2 Os11g0546600 protein (Phospholipase A2, putative, expressed) Q2R2W3 Q2R2W3_ORYSJ Os11g0546600 LOC_Os11g34440 OSNPB_110546600 ENOG411E42W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA two-component response regulator NA NA NA NA NA NA NA ENOG411E42V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os06g0681200 protein (Putative phytocyanin protein, PUP2) (cDNA clone:002-135-E05, full insert sequence) Q653Y0 Q653Y0_ORYSJ Os06g0681200 OsJ_22381 OSNPB_060681200 P0547F09.13 ENOG411E42Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0187400 protein,Os04g0189000 protein A0A0P0W7Y5,A0A0P0W6Z9 A0A0P0W7Y5_ORYSJ,A0A0P0W6Z9_ORYSJ Os04g0187400 OSNPB_040187400,Os04g0189000 OSNPB_040189000 ENOG411E42P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calmodulin-like protein 5-like NA NA NA NA NA NA NA ENOG411E42S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os05g0573600 protein B9FIF8 B9FIF8_ORYSJ Os05g0573600 OsJ_19627 OSNPB_050573600 ENOG411E42R Q84JL8,A0A1P8AQS7 Q84JL8_ARATH,A0A1P8AQS7_ARATH Triacylglycerol lipase-like protein (Uncharacterized protein At1g04985),Triacylglycerol lipase-like protein 21924,15594 Triacylglycerol lipase-like protein (Uncharacterized protein At1g04985),Triacylglycerol lipase-like protein integral component of membrane [GO:0016021] locus:2824357; AT1G04985 NA Os04g0669100 protein (cDNA clone:J023045K17, full insert sequence) (cDNA clone:J033119L03, full insert sequence) Q0J973 Q0J973_ORYSJ Os04g0669100 Os04g0669100 OsJ_16558 OSNPB_040669100 ENOG411E42Y DOF3.5 Q9SVC5,C0SVE3 DOF35_ARATH,C0SVE3_ARATH Dof zinc finger protein DOF3.5 (AtDOF3.5),Dof-type zinc finger DNA-binding family protein (Uncharacterized protein At3g52440) (Fragment) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 26936,29267 Dof zinc finger protein DOF3.5 (AtDOF3.5),Dof-type zinc finger DNA-binding family protein (Uncharacterized protein At3g52440) (Fragment) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:2079954; AT3G52440 zinc finger NA NA NA NA NA NA NA ENOG411E42X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os01g0212700 protein (Fragment) A0A0P0V031 A0A0P0V031_ORYSJ Os01g0212700 OSNPB_010212700 ENOG411E42Z T18N14.110 Q9LZW6,Q9SCT5 Q9LZW6_ARATH,Q9SCT5_ARATH AT5g01800/T20L15_70 (Saposin B domain-containing protein) (Uncharacterized protein T20L15_70),AT3g51730/T18N14_110 (Saposin B domain-containing protein) (Uncharacterized protein T18N14.110) 24632,24098 AT5g01800/T20L15_70 (Saposin B domain-containing protein) (Uncharacterized protein T20L15_70),AT3g51730/T18N14_110 (Saposin B domain-containing protein) (Uncharacterized protein T18N14.110) lipid metabolic process [GO:0006629],vacuole [GO:0005773]; lipid metabolic process [GO:0006629] locus:2181037;,locus:2098257; AT5G01800,AT3G51730 Saposin-like type B region 1 Os01g0166700 protein (cDNA clone:J013119N08, full insert sequence) Q5VQH7 Q5VQH7_ORYSJ Os01g0166700 Os01g0166700 OsJ_00511 OSNPB_010166700 P0701D05.24 ENOG411E42G F4J6B8,A0A178VGR9 F4J6B8_ARATH,A0A178VGR9_ARATH Vacuolar protein sorting 55 (VPS55) family protein 12472,10076 Vacuolar protein sorting 55 (VPS55) family protein endosome [GO:0005768]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; late endosome to vacuole transport via multivesicular body sorting pathway [GO:0032511]; negative regulation of protein localization to cell surface [GO:2000009],integral component of membrane [GO:0016021] locus:2080732; AT3G11530 Vacuolar protein Os01g0966500 protein (Fragment) A0A0N7KEG9,A0A0P0VDE0 A0A0N7KEG9_ORYSJ,A0A0P0VDE0_ORYSJ Os01g0966500 OSNPB_010966500 ENOG411E42C CPN10-1,CPN10-2 Q9M1C2,O80504 CH101_ARATH,CH102_ARATH 10 kDa chaperonin 1, chloroplastic,10 kDa chaperonin 2, chloroplastic (Chloroplast chaperonin 10) (Chl-Cpn10) FUNCTION: Functions as co-chaperone for protein folding in chloroplasts. {ECO:0000250|UniProtKB:Q9M1C2}.,FUNCTION: Functions as co-chaperone for protein folding in chloroplasts. {ECO:0000269|PubMed:11402030}. 15141,15049 10 kDa chaperonin 1, chloroplastic,10 kDa chaperonin 2, chloroplastic (Chloroplast chaperonin 10) (Chl-Cpn10) chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; chaperone binding [GO:0051087]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; chaperone mediated protein folding requiring cofactor [GO:0051085]; response to unfolded protein [GO:0006986],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; chaperone binding [GO:0051087]; metal ion binding [GO:0046872]; protein domain specific binding [GO:0019904]; unfolded protein binding [GO:0051082]; chaperone mediated protein folding requiring cofactor [GO:0051085]; protein folding [GO:0006457]; response to unfolded protein [GO:0006986] TISSUE SPECIFICITY: Expressed at low levels in germinating seeds, seedlings, rosettes leaves, flowers and siliques. {ECO:0000269|PubMed:23783410}.,TISSUE SPECIFICITY: Expressed in leaves and stems (PubMed:11402030). Expressed at low levels in germinating seeds, seedlings, rosettes leaves, flowers and siliques (PubMed:23783410). {ECO:0000269|PubMed:11402030, ECO:0000269|PubMed:23783410}. locus:2101492;,locus:2042381; AT3G60210,AT2G44650 Chaperonin Chloroplast chaperonin 10, putative, expressed (Os10g0566700 protein) (Putative chloroplast chaperonin) Q7XC09 Q7XC09_ORYSJ OSJNBa0057L21.3 LOC_Os10g41710 Os10g0566700 OSNPB_100566700 ENOG411E42M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine-rich secretory protein family Os02g0787000 protein (Putative Pathogenesis-related protein PRB1-3) Q6K4Q3 Q6K4Q3_ORYSJ Os02g0787000 OJ1316_E06.20 OSJNBa0054K20.6 OSNPB_020787000 ENOG411E42N FOLB1,FOLB2,FOLB3 Q9SF23,Q9FM54,Q6GKX5,F4IYU3 FOLB1_ARATH,FOLB2_ARATH,FOLB3_ARATH,F4IYU3_ARATH Dihydroneopterin aldolase 1 (DHNA1) (EC 4.1.2.25) (7,8-dihydroneopterin aldolase) (AtFolB1),Dihydroneopterin aldolase 2 (DHNA2) (EC 4.1.2.25) (7,8-dihydroneopterin aldolase) (AtFolB2),Probable dihydroneopterin aldolase 3 (DHNA3) (EC 4.1.2.25) (7,8-dihydroneopterin aldolase) (AtFolB3),Dihydroneopterin aldolase FUNCTION: Catalyzes the conversion of 7,8-dihydroneopterin into 6-hydroxymethyl-7,8-dihydropterin, a biosynthetic precursor of the vitamin tetrahydrofolate. Can use L-threo-dihydroneopterin and D-erythro-dihydroneopterin as substrates for the formation of 6-hydroxymethyldihydropterin, but it can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin. {ECO:0000269|PubMed:15107504, ECO:0000269|PubMed:15165863}.,FUNCTION: Catalyzes the conversion of 7,8-dihydroneopterin into 6-hydroxymethyl-7,8-dihydropterin, a biosynthetic precursor of the vitamin tetrahydrofolate. Can use L-threo-dihydroneopterin and D-erythro-dihydroneopterin as substrates for the formation of 6-hydroxymethyldihydropterin, but it can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin. {ECO:0000269|PubMed:15107504}.,FUNCTION: Catalyzes the conversion of 7,8-dihydroneopterin into 6-hydroxymethyl-7,8-dihydropterin, a biosynthetic precursor of the vitamin tetrahydrofolate. Can use L-threo-dihydroneopterin and D-erythro-dihydroneopterin as substrates for the formation of 6-hydroxymethyldihydropterin, but it can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin. {ECO:0000250|UniProtKB:Q9SF23}. PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 3/4. {ECO:0000305}. ARA:AT3G11750-MONOMER;,ARA:AT5G62980-MONOMER;,ARA:AT3G21730-MONOMER; 4.1.2.25; 4.1.2.25 16281,14685,18035,8635 Dihydroneopterin aldolase 1 (DHNA1) (EC 4.1.2.25) (7,8-dihydroneopterin aldolase) (AtFolB1),Dihydroneopterin aldolase 2 (DHNA2) (EC 4.1.2.25) (7,8-dihydroneopterin aldolase) (AtFolB2),Probable dihydroneopterin aldolase 3 (DHNA3) (EC 4.1.2.25) (7,8-dihydroneopterin aldolase) (AtFolB3),Dihydroneopterin aldolase cytosol [GO:0005829]; 7,8-dihydromonapterin aldolase activity [GO:0102083]; dihydroneopterin aldolase activity [GO:0004150]; folic acid biosynthetic process [GO:0046656]; tetrahydrofolate biosynthetic process [GO:0046654],7,8-dihydromonapterin aldolase activity [GO:0102083]; dihydroneopterin aldolase activity [GO:0004150]; folic acid biosynthetic process [GO:0046656]; tetrahydrofolate biosynthetic process [GO:0046654],dihydroneopterin aldolase activity [GO:0004150]; folic acid-containing compound metabolic process [GO:0006760] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and siliques. {ECO:0000269|PubMed:15107504}.,TISSUE SPECIFICITY: Expressed at very low levels in siliques. {ECO:0000269|PubMed:15107504}. locus:2081496;,locus:2166300;,locus:2093054; AT3G11750,AT5G62980,AT3G21730 dihydroneopterin aldolase 7,8-dihydroneopterin aldolase (EC 4.1.2.25) Q5VMP2,Q6Z0T7,Q653D9 Q5VMP2_ORYSJ,Q6Z0T7_ORYSJ,Q653D9_ORYSJ Os06g0154600 OSJNBa0085L11.15 OSNPB_060154600,Os08g0556200 Os08g0556200 OJ1150_A11.9 OsJ_28246 OSNPB_080556200 P0439B07.24,Os09g0560500 Os09g0560500 OJ1065_E04.28 OSNPB_090560500 P0635G10.5 FUNCTION: Catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin. {ECO:0000256|RuleBase:RU362079}. ENOG411E42I CML45 Q93Z27 CML45_ARATH Probable calcium-binding protein CML45 (Calmodulin-like protein 45) FUNCTION: Potential calcium sensor. {ECO:0000250}. 23834 Probable calcium-binding protein CML45 (Calmodulin-like protein 45) calcium ion binding [GO:0005509] locus:2164870; AT5G39670 Calcium-binding EF hand family protein NA NA NA NA NA NA NA ENOG411E42H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Expressed protein (Os12g0198000 protein) Q2QWE5 Q2QWE5_ORYSJ Os12g0198000 LOC_Os12g09620 Os12g0198000 OsJ_35528 OSNPB_120198000 ENOG411E42K QCR7-2,QCR7-1 F4JWS8,Q9SUU5,A0A1P8BFE2,F4JWS9,F4JUC2 QCR72_ARATH,QCR71_ARATH,A0A1P8BFE2_ARATH,F4JWS9_ARATH,F4JUC2_ARATH Cytochrome b-c1 complex subunit 7-2 (Complex III subunit VII),Cytochrome b-c1 complex subunit 7-1 (Complex III subunit VII),Cytochrome b-c1 complex subunit 7 FUNCTION: This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping (By similarity). {ECO:0000250}.,FUNCTION: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. {ECO:0000256|PIRNR:PIRNR000022}. 14596,14527,10762,12761,12046 Cytochrome b-c1 complex subunit 7-2 (Complex III subunit VII),Cytochrome b-c1 complex subunit 7-1 (Complex III subunit VII),Cytochrome b-c1 complex subunit 7 membrane [GO:0016020]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; aerobic respiration [GO:0009060]; hydrogen ion transmembrane transport [GO:1902600]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122]; mitochondrial respiratory chain complex III assembly [GO:0034551],membrane [GO:0016020]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; aerobic respiration [GO:0009060]; hydrogen ion transmembrane transport [GO:1902600]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122]; mitochondrial respiratory chain complex III assembly [GO:0034551],mitochondrial respiratory chain complex III [GO:0005750]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122] locus:2145527;,locus:2127846; AT5G25450,AT4G32470 component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is part of the mitochondrial respiratory chain Os07g0205000 protein,Cytochrome b-c1 complex subunit 7 Q0D7W3,Q84M34,Q0J6Z4,B9FW35 Q0D7W3_ORYSJ,Q84M34_ORYSJ,Q0J6Z4_ORYSJ,B9FW35_ORYSJ Os07g0205000 Os07g0205000 OSNPB_070205000,Os03g0806900 LOC_Os03g59220 Os03g0806900 OsJ_13033 OSJNBa0059E14.17 OSNPB_030806900,Os08g0246400 Os08g0246400 OSNPB_080246400,Os07g0205000 OsJ_23497 OSNPB_070205000 FUNCTION: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. {ECO:0000256|PIRNR:PIRNR000022}. ENOG411E42J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor Os09g0474000 protein (cDNA clone:002-141-G12, full insert sequence) Q69JJ9 Q69JJ9_ORYSJ Os09g0474000 Os09g0474000 OsJ_10404 OSJNBa0026C08.19 OSNPB_090474000 ENOG411E426 Q6ID70,F4J2B8 Y3377_ARATH,F4J2B8_ARATH Uncharacterized protein At3g03773,HSP20-like chaperones superfamily protein R-ATH-2162123;R-ATH-3371497;R-ATH-3371511;R-ATH-3371568; 17366,23723 Uncharacterized protein At3g03773,HSP20-like chaperones superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; negative regulation of cytokinin-activated signaling pathway [GO:0080037]; positive regulation of gene expression [GO:0010628]; regulation of auxin polar transport [GO:2000012]; root meristem growth [GO:0010449] locus:504955859; AT3G03773 CS domain Os03g0655300 protein A0A0P0W1L4 A0A0P0W1L4_ORYSJ Os03g0655300 OSNPB_030655300 ENOG411E421 FTRC Q9SJ89,A0A1P8AY16 FTRC_ARATH,A0A1P8AY16_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic (FTR-C) (EC 1.8.7.2) (Ferredoxin-thioredoxin reductase subunit B) (FTR-B),Ferredoxin thioredoxin reductase catalytic beta chain family protein FUNCTION: Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin. {ECO:0000250}. ARA:AT2G04700-MONOMER; 1.8.7.2 16434,10177 Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic (FTR-C) (EC 1.8.7.2) (Ferredoxin-thioredoxin reductase subunit B) (FTR-B),Ferredoxin thioredoxin reductase catalytic beta chain family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; ferredoxin-thioredoxin reductase activity [GO:0103012]; ferredoxin:thioredoxin reductase activity [GO:0030385]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114],oxidoreductase activity, acting on iron-sulfur proteins as donors [GO:0016730] locus:2049228; AT2G04700 FTR is a 4Fe-4S protein playing a central role in the ferredoxin thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic (FTR-C) (EC 1.8.7.2) (Ferredoxin-thioredoxin reductase subunit B) (FTR-B) Q6K471 FTRC_ORYSJ Os09g0249900 LOC_Os09g07570 OJ1116_H10.13 OJ1695_A02.34 OsJ_28527 FUNCTION: Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin. {ECO:0000250}. ENOG411E420 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os07g0686100 protein (cDNA clone:002-173-C06, full insert sequence) Q0D3H8 Q0D3H8_ORYSJ Os07g0686100 Os07g0686100 OSNPB_070686100 ENOG411E428 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYB9 Q9SLI0 Q9SLI0_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein F20D21.35) 26383 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein F20D21.35) integral component of membrane [GO:0016021] locus:2020163; AT1G54540 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411DYBP WAVE5,SCAR3,SCAR1,ATRANGAP2,WAVE2 Q5XPK0,Q9LP46,Q6AWX6,F4IGW2,A0A1P8B4S1,A0A1P8B4R2,A0A1P8B1T4,A0A1P8B4R7,A0A1P8B4T4,B3H466,B3H7L7 SCARL_ARATH,SCAR3_ARATH,SCAR1_ARATH,F4IGW2_ARATH,A0A1P8B4S1_ARATH,A0A1P8B4R2_ARATH,A0A1P8B1T4_ARATH,A0A1P8B4R7_ARATH,A0A1P8B4T4_ARATH,B3H466_ARATH,B3H7L7_ARATH Scar-like domain-containing protein WAVE 5,Protein SCAR3 (AtSCAR3) (Protein WAVE2),Protein SCAR1 (AtSCAR1) (Protein WAVE1),SCAR family protein Phenotype not described. FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex. Regulates trichome branch positioning and expansion. {ECO:0000269|PubMed:15316111}. 222122,113030,92090,78390,207595,220991,73901,217839,220114,108641,107956 Scar-like domain-containing protein WAVE 5,Protein SCAR3 (AtSCAR3) (Protein WAVE2),Protein SCAR1 (AtSCAR1) (Protein WAVE1),SCAR family protein cytoskeleton [GO:0005856]; actin cytoskeleton organization [GO:0030036],cytoskeleton [GO:0005856]; SCAR complex [GO:0031209]; actin binding [GO:0003779]; actin cytoskeleton organization [GO:0030036]; positive regulation of actin nucleation [GO:0051127],cell periphery [GO:0071944]; cytoskeleton [GO:0005856]; intracellular organelle [GO:0043229]; membrane [GO:0016020]; SCAR complex [GO:0031209]; actin monomer binding [GO:0003785]; actin cytoskeleton organization [GO:0030036]; positive regulation of actin nucleation [GO:0051127] TISSUE SPECIFICITY: Expressed in expanding cotyledons, expanding leaves and expanding siliques containing developing embryos. Detected in unopened flower buds. Reduced expression in mature leaves. {ECO:0000269|PubMed:15534215}.,TISSUE SPECIFICITY: Expressed in expanding cotyledons, expanding leaves and expanding siliques containing developing embryos. Detected in unopened flower buds. Reduced expression in mature leaves and mature cotyledons. {ECO:0000269|PubMed:15534215}.,TISSUE SPECIFICITY: Expressed in expanding cotyledons, expanding leaves and expanding siliques containing developing embryos. Detected in unopened flower buds and in the expanding tip region of roots. Reduced expression in mature leaves and mature cotyledons. {ECO:0000269|PubMed:15534215}. locus:2124598;,locus:2030000;,locus:2055511; AT4G18600,AT1G29170,AT2G34150 SCAR-like protein SCAR-like protein 2,Os01g0208600 protein (Fragment) Q5QNA6,A0A0P0V057,A0A0P0UZG7 SCRL2_ORYSJ,A0A0P0V057_ORYSJ,A0A0P0UZG7_ORYSJ Os01g0208600 LOC_Os01g11040 OSJNBa0016I09.25,Os01g0208600 OSNPB_010208600 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411DYBZ NQR Q9LK88 NQR_ARATH NADPH:quinone oxidoreductase (EC 1.6.5.2) FUNCTION: The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinones involved in detoxification pathways. ARA:AT3G27890-MONOMER; 1.6.5.3; 1.6.5.2 21556 NADPH:quinone oxidoreductase (EC 1.6.5.2) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; FMN binding [GO:0010181]; FMN reductase (NADPH) activity [GO:0052873]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955]; defense response to bacterium [GO:0042742]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651] locus:2086445; AT3G27890 nadph quinone Probable NADPH:quinone oxidoreductase 1 (EC 1.6.5.2) Q941Z0 NQR1_ORYSJ Os01g0953600 LOC_Os01g72430 OsJ_04792 P0431G06.26-1 FUNCTION: The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinones involved in detoxification pathways. {ECO:0000250}. ENOG411EJIK Q9FLJ3 Q9FLJ3_ARATH Uncharacterized protein 6978 Uncharacterized protein locus:4515103746; AT5G61412 NA NA NA NA NA NA NA NA ENOG411E44J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0610600 protein (Fragment) A0A0P0Y472 A0A0P0Y472_ORYSJ Os11g0610600 OSNPB_110610600 ENOG411E44I NRPB8B,NRPB8A Q9M1A8,O81097 RPB8B_ARATH,RPB8A_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B (RNA polymerase Rpb8),DNA-directed RNA polymerases II and V subunit 8A (RNA polymerase I, II and III 16.5 kDa subunit) (AtRPABC16.5) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerase V which mediates RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 16603,16511 DNA-directed RNA polymerases II, IV and V subunit 8B (RNA polymerase Rpb8),DNA-directed RNA polymerases II and V subunit 8A (RNA polymerase I, II and III 16.5 kDa subunit) (AtRPABC16.5) DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383],DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase V complex [GO:0000419]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383] locus:2097468;,locus:2020188; AT3G59600,AT1G54250 DNA-directed RNA polymerases I II and III Os03g0845700 protein (Putative RNA polymerase) (RNA polymerase Rpb8 family protein, expressed) (cDNA clone:001-105-B10, full insert sequence),Os06g0697400 protein (Fragment) Q84SP5,A0A0P0X0W6 Q84SP5_ORYSJ,A0A0P0X0W6_ORYSJ OSJNBa0032G11.30 LOC_Os03g62870 Os03g0845700 OsJ_13351 OSJNBb0043P23.23 OSNPB_030845700,Os06g0697400 OSNPB_060697400 ENOG411E44Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0199600 protein A0A0P0VG37 A0A0P0VG37_ORYSJ Os02g0199600 OSNPB_020199600 ENOG411EICA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0119200 protein Q5VPR1 Q5VPR1_ORYSJ Os06g0119200 OSJNBa0062J13.36 OSNPB_060119200 P0660D08.5 ENOG411EICD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Eukaryotic elongation factor-2 kinase NA NA NA NA NA NA NA ENOG411EICP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EICW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EICU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EICX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0436825 protein,Os01g0784833 protein,Os05g0501325 protein A0A0P0XUH5,A0A0P0V908,A0A0P0WP41 A0A0P0XUH5_ORYSJ,A0A0P0V908_ORYSJ,A0A0P0WP41_ORYSJ Os10g0436825 OSNPB_100436825,Os01g0784833 OSNPB_010784833,Os05g0501325 OSNPB_050501325 ENOG411EIC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0352600 protein Q10LF3 Q10LF3_ORYSJ Os03g0352600 LOC_Os03g22930 OsJ_10855 OSNPB_030352600 ENOG411EHHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0319850 protein (Fragment) A0A0P0WVY2 A0A0P0WVY2_ORYSJ Os06g0319850 OSNPB_060319850 ENOG411EHHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0733900 protein,Os03g0734000 protein (cDNA clone:002-105-D10, full insert sequence) C7IZE1,Q6AVT3 C7IZE1_ORYSJ,Q6AVT3_ORYSJ Os03g0733900 OSNPB_030733900,OSJNBa0027J18.18 LOC_Os03g52360 Os03g0734000 OsJ_12470 OSNPB_030734000 ENOG411DSYT DXR Q9XFS9,F4K7T6 DXR_ARATH,F4K7T6_ARATH 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (1-deoxyxylulose-5-phosphate reductoisomerase) (DXP reductoisomerase) (EC 1.1.1.267) (2-C-methyl-D-erythritol 4-phosphate synthase) (Protein PIGMENT-DEFECTIVE EMBRYO 129),1-deoxy-D-xylulose 5-phosphate reductoisomerase DISRUPTION PHENOTYPE: Albino and dwarf phenotype. {ECO:0000269|PubMed:20404857}. Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP). Required for chloroplast development. {ECO:0000269|PubMed:12177470, ECO:0000269|PubMed:16941216, ECO:0000269|PubMed:20404857}. MISCELLANEOUS: Plants over-expressing DXR show increased levels of plastid isoprenoids derived from the methylerythritol 4-phosphate (MEP) pathway, such as chlorophylls, carotenoids, and taxadiene. {ECO:0000305|PubMed:16941216}. PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 1/6. ARA:AT5G62790-MONOMER;MetaCyc:AT5G62790-MONOMER; 1.1.1.267; 1.1.1.267 51964,54228 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (1-deoxyxylulose-5-phosphate reductoisomerase) (DXP reductoisomerase) (EC 1.1.1.267) (2-C-methyl-D-erythritol 4-phosphate synthase) (Protein PIGMENT-DEFECTIVE EMBRYO 129),1-deoxy-D-xylulose 5-phosphate reductoisomerase chloroplast stroma [GO:0009570]; 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [GO:0030604]; manganese ion binding [GO:0030145]; NADPH binding [GO:0070402]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process [GO:0051484],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [GO:0030604]; isomerase activity [GO:0016853]; metal ion binding [GO:0046872]; NADPH binding [GO:0070402]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288]; isoprenoid biosynthetic process [GO:0008299]; response to cadmium ion [GO:0046686] locus:2170773; AT5G62790 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (1-deoxyxylulose-5-phosphate reductoisomerase) (DXP reductoisomerase) (EC 1.1.1.267) (2-C-methyl-D-erythritol 4-phosphate synthase) Q8W250 DXR_ORYSJ DXR Os01g0106900 LOC_Os01g01710 OsJ_00058 P0005A05.24 P0482C06.2 FUNCTION: Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP). Required for chloroplast development (By similarity). {ECO:0000250}. ENOG411DSYU PCMP-E35 Q9SVH0 PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770 86377 Pentatricopeptide repeat-containing protein At4g20770 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2121479; AT4G20770 Pentatricopeptide repeat-containing protein Os02g0167200 protein (Fragment) Q0E3L9 Q0E3L9_ORYSJ Os02g0167200 Os02g0167200 OSNPB_020167200 ENOG411DSYV MFO20.3 Q67ZD0,F4K306 Q67ZD0_ARATH,F4K306_ARATH Major surface like glycoprotein (Metalloendopeptidase / zinc ion binding protein),Metalloendopeptidase / zinc ion binding protein 93199,98656 Major surface like glycoprotein (Metalloendopeptidase / zinc ion binding protein),Metalloendopeptidase / zinc ion binding protein membrane [GO:0016020]; metalloendopeptidase activity [GO:0004222]; cell adhesion [GO:0007155] locus:2163847; AT5G42620 Metalloendopeptidase metallopeptidase zinc ion binding protein Major surface like glycoprotein, putative, expressed (Os03g0731500 protein) (Putative leishmanolysin-like protein) (cDNA clone:J013116D21, full insert sequence) (cDNA clone:J013123C23, full insert sequence) Q6AVG4 Q6AVG4_ORYSJ OSJNBa0079G12.20 LOC_Os03g52150 Os03g0731500 OSNPB_030731500 ENOG411DSYW OST48 Q944K2 OST48_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit (Oligosaccharyl transferase 48 kDa subunit) (EC 2.4.99.18) (Protein DEFECTIVE GLYCOSYLATION 1) DISRUPTION PHENOTYPE: Embryo-lethal. {ECO:0000269|PubMed:15860005}. Dwarf. Growth defect of the dark-grown hypocotyl. Post-embryonic development ceases entirely at the seedling stage. Cell wall polysaccharides with an altered monosaccharide composition: increased arabinose and glucose content in non-cellulosic polymers. Cell elongation is reduced in both hypocotyls and roots. Organization of the endodermis and pericycle cell layers of the hypocotyl is abnormal. Cell division is not impaired. Embryo defective; Preglobular / Globular-P. Lerouge-2007 FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000269|PubMed:15860005}. PATHWAY: Protein modification; protein glycosylation. ARA:AT5G66680-MONOMER; R-ATH-6798695; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 2.4.99.18 48744 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit (Oligosaccharyl transferase 48 kDa subunit) (EC 2.4.99.18) (Protein DEFECTIVE GLYCOSYLATION 1) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; nucleolus [GO:0005730]; oligosaccharyltransferase complex [GO:0008250]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; transferase activity, transferring glycosyl groups [GO:0016757]; plant-type cell wall organization [GO:0009664]; protein N-linked glycosylation via asparagine [GO:0018279]; unidimensional cell growth [GO:0009826] locus:2173659; AT5G66680 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit (Oligosaccharyl transferase 48 kDa subunit) (EC 2.4.99.18) Q6ZLK0 OST48_ORYSJ OST48 Os07g0209000 LOC_Os07g10830 OJ1136_A05.21 FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000250}. ENOG411DSYP MOS4 Q949S9 SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog (Modifier of SNC1 member 4) (Protein BCAS2 homolog) DISRUPTION PHENOTYPE: Enhanced susceptibility to virulent and avirulent pathogens. {ECO:0000269|PubMed:17575050}. suppresses the autoimmunity-related phenotypes of snc1. Reduced fertility; Late flowering-X. Li-2007 FUNCTION: Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Involved in mRNA splicing. {ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:22248079}. R-ATH-72163; 29680 Pre-mRNA-splicing factor SPF27 homolog (Modifier of SNC1 member 4) (Protein BCAS2 homolog) catalytic step 2 spliceosome [GO:0071013]; nucleolus [GO:0005730]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; Prp19 complex [GO:0000974]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; innate immune response [GO:0045087]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:505006356; AT3G18165 pre-mRNA-splicing factor SPF27 homolog NA NA NA NA NA NA NA ENOG411DSYQ F6F9.20 Q9FXH3,Q9FWT4 Q9FXH3_ARATH,Q9FWT4_ARATH ATP-dependent protease La (LON) domain protein (F6F9.20 protein) (Uncharacterized protein At1g19740),ATP-dependent protease La (LON) domain protein (F1B16.1 protein) (Protease, putative) (Putative protease) 31371,31336 ATP-dependent protease La (LON) domain protein (F6F9.20 protein) (Uncharacterized protein At1g19740),ATP-dependent protease La (LON) domain protein (F1B16.1 protein) (Protease, putative) (Putative protease) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; intracellular [GO:0005622]; peptidase activity [GO:0008233]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209],chloroplast [GO:0009507]; intracellular [GO:0005622]; peptidase activity [GO:0008233]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209] locus:2013144;,locus:2018427; AT1G19740,AT1G75460 protease Os07g0509700 protein (Putative ATP-dependent proteinase BsgA) (cDNA, clone: J075094E19, full insert sequence) Q6Z4A9 Q6Z4A9_ORYSJ Os07g0509700 OSNPB_070509700 P0409B11.11 ENOG411DSYR PUMP3 Q9XI74 PUMP3_ARATH Mitochondrial uncoupling protein 3 (AtPUMP3) Mutant plant Does Not show the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness.,Mutant plants showed the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness. FUNCTION: PUMPS are mitochondrial transporter proteins that create proton leaks across the inner mitochondrial membrane, thus uncoupling oxidative phosphorylation. This leads to a decrease in the efficiency of oxidative phosphorylation and an increase in heat production. May be involved in protecting plant cells against oxidative stress damage (By similarity). {ECO:0000250}. R-ATH-167826;R-ATH-167827; 33441 Mitochondrial uncoupling protein 3 (AtPUMP3) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839]; regulation of mitochondrial membrane potential [GO:0051881]; response to cold [GO:0009409] locus:2035769; AT1G14140 mitochondrial uncoupling protein OSJNBa0064H22.17 protein (Os04g0449000 protein) (cDNA clone:002-104-H10, full insert sequence),Os04g0449000 protein Q7XTC8,A0A0P0WAR0 Q7XTC8_ORYSJ,A0A0P0WAR0_ORYSJ Os04g0449000 OsJ_14974 OSJNBa0064H22.17 OSNPB_040449000,Os04g0449000 OSNPB_040449000 ENOG411DSYS Q9LZ15,Q9FNI9,Q9LSJ3,A0A1I9LM95,A0A1I9LM94 FBL78_ARATH,FBD14_ARATH,FBL48_ARATH,A0A1I9LM95_ARATH,A0A1I9LM94_ARATH Putative F-box/LRR-repeat protein At5g02700,Putative FBD-associated F-box protein At5g22720,Putative F-box/LRR-repeat protein At3g28410,F-box family protein 52421,53626,53692,26015,25205 Putative F-box/LRR-repeat protein At5g02700,Putative FBD-associated F-box protein At5g22720,Putative F-box/LRR-repeat protein At3g28410,F-box family protein locus:2151316;,locus:2088882; AT5G02700,AT5G22720,AT3G28410 F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411DSYX HDA7,HDA6 Q9FH09,Q9FML2 HDA7_ARATH,HDA6_ARATH Histone deacetylase 7 (EC 3.5.1.98),Histone deacetylase 6 (EC 3.5.1.98) DISRUPTION PHENOTYPE: Curling and serrated leaves. Down curling phenotype on both the distal and lateral axis. {ECO:0000269|PubMed:23271976}. hypersensitive to ABA and salt stress; histone acetylation defect. Late flowering; Delayed leaf senescence-V. Chalkam-2008 FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. May be involved in flowering induction. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250, ECO:0000269|PubMed:16699543}.,FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Might remove acetyl residues only from specific targets, such as rDNA repeats or complex transgenes. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required for rRNA gene silencing in nucleolar dominance. Plays a role in transgene silencing, but this effect seems to bee independent of the histone deacetylase activity (PubMed:11340181, PubMed:12486004, PubMed:15037732, PubMed:16648464). Part of the AS1 repressor complex to regulate the KNOX expression in leaf development (PubMed:23271976). Binds to KNAT1, KNAT2, and KNATM chromatin (PubMed:23271976). {ECO:0000269|PubMed:11340181, ECO:0000269|PubMed:12486004, ECO:0000269|PubMed:15037732, ECO:0000269|PubMed:16648464, ECO:0000269|PubMed:23271976}. MISCELLANEOUS: HDA6 mutations induce high acetylation of histone H4, increased methylation of histone H3 'Lys-4' and hypomethylation of DNA at particular loci, such as the rDNA repeats. R-ATH-1538133; 3.5.1.98 46017,52652 Histone deacetylase 7 (EC 3.5.1.98),Histone deacetylase 6 (EC 3.5.1.98) nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; regulation of transcription, DNA-templated [GO:0006355]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351],chloroplast envelope [GO:0009941]; nucleolus [GO:0005730]; nucleus [GO:0005634]; histone deacetylase activity [GO:0004407]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; embryo development ending in seed dormancy [GO:0009793]; gene silencing [GO:0016458]; histone deacetylation [GO:0016575]; posttranscriptional gene silencing [GO:0016441]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; seed maturation [GO:0010431]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Low expression in flowers. {ECO:0000269|PubMed:16699543}.,TISSUE SPECIFICITY: Not detected in leaves, stems, flowers and young siliques. {ECO:0000269|PubMed:11117260}. locus:2157111;,locus:2162017; AT5G35600,AT5G63110 histone deacetylase Histone deacetylase (EC 3.5.1.98) Q6ZB59 Q6ZB59_ORYSJ Os08g0344100 OJ1119_B10.28 OSNPB_080344100 ENOG411DSYY LAF3 F4IY42,A0A1I9LN01,A0A1I9LMZ9,F4IY41,A0A1I9LN02 F4IY42_ARATH,A0A1I9LN01_ARATH,A0A1I9LMZ9_ARATH,F4IY41_ARATH,A0A1I9LN02_ARATH Amidohydrolase family 62943,63785,52158,50801,48998 Amidohydrolase family hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810],integral component of membrane [GO:0016021]; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810],endoplasmic reticulum [GO:0005783]; perinuclear region of cytoplasm [GO:0048471]; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810] locus:2081998; AT3G55850 Amidohydrolase family Os01g0952700 protein (Putative LAF3 isoform 2) (cDNA clone:J033129L01, full insert sequence) Q5JKZ8 Q5JKZ8_ORYSJ Os01g0952700 OsJ_04785 OSNPB_010952700 P0431G06.12 ENOG411DSYZ ELM1,MBL20.6 Q93YN4,A0A1P8BB40,Q8LGK6 ELM1_ARATH,A0A1P8BB40_ARATH,Q8LGK6_ARATH Mitochondrial fission protein ELM1 (Protein ELONGATED MITOCHONDRIA 1),Fission ELM1-like protein (DUF1022),AT5G06180 protein (At5g06180) (Fission ELM1-like protein (DUF1022)) DISRUPTION PHENOTYPE: Reduced plant growth and early bolting. Elongated mitochondria and reduction of the number of mitochondria per cell. {ECO:0000269|PubMed:18559960}. homozygotes show elongated mitochondria,Slow growing and slightly smaller than WT. Early bolting. Severely elongated mitochondria often forming an interconnected network. Some small discrete mitochondria are found in each cell. Mitochondrial movement is normal.,Elongated mitochondria Dwarf; Slow growth; Elongated mitochondria-S. Arimura-2008 FUNCTION: Plant-specific factor involved in mitochondria fission. Is required for the correct localization of DRP3A from the cytosol to mitochondrial fission sites. Does not seem to be required for peroxisomal division. {ECO:0000269|PubMed:18559960}. 47605,37355,44981 Mitochondrial fission protein ELM1 (Protein ELONGATED MITOCHONDRIA 1),Fission ELM1-like protein (DUF1022),AT5G06180 protein (At5g06180) (Fission ELM1-like protein (DUF1022)) mitochondrial outer membrane [GO:0005741]; mitochondrial fission [GO:0000266] locus:2176332;,locus:2160737; AT5G22350,AT5G06180 Pfam:DUF1022 Os02g0535700 protein,Os04g0414000 protein A0A0P0VK57,A0A0P0WA22 A0A0P0VK57_ORYSJ,A0A0P0WA22_ORYSJ Os02g0535700 OSNPB_020535700,Os04g0414000 OSNPB_040414000 ENOG411DSYD F4JNE1 F4JNE1_ARATH Poly(U)-specific endoribonuclease-B protein 35951 Poly(U)-specific endoribonuclease-B protein hydrolase activity, acting on ester bonds [GO:0016788] locus:2130519; AT4G17100 Endoribonuclease XendoU Os04g0542900 protein (cDNA clone:J013155A07, full insert sequence) Q0JBC2 Q0JBC2_ORYSJ Os04g0542900 Os04g0542900 OSNPB_040542900 ENOG411DSYE ABCB28 Q8LPQ6,F4JSM3 AB28B_ARATH,F4JSM3_ARATH ABC transporter B family member 28 (ABC transporter ABCB.28) (AtABCB28) (Non-intrinsic ABC protein 8) (TAP-related protein 1),Non-intrinsic ABC protein 8 77926,59245 ABC transporter B family member 28 (ABC transporter ABCB.28) (AtABCB28) (Non-intrinsic ABC protein 8) (TAP-related protein 1),Non-intrinsic ABC protein 8 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2131809; AT4G25450 ABC transporter B family member Os07g0464600 protein (Putative ATP-binding cassette, sub-family B, member 10) (cDNA clone:J023030H03, full insert sequence) Q69RG8 Q69RG8_ORYSJ P0473C09.107 Os07g0464600 OsJ_24163 OSNPB_070464600 ENOG411DSYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lectin-domain containing receptor kinase NA NA NA NA NA NA NA ENOG411DSYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os12g0630800 protein A0A0P0YCR4 A0A0P0YCR4_ORYSJ Os12g0630800 OSNPB_120630800 ENOG411DSYA VHA-H Q9LX65 VATH_ARATH V-type proton ATPase subunit H (V-ATPase subunit H) (Vacuolar H(+)-ATPase subunit H) (Vacuolar proton pump subunit H) FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}. R-ATH-1222556;R-ATH-77387;R-ATH-917977; 50284 V-type proton ATPase subunit H (V-ATPase subunit H) (Vacuolar H(+)-ATPase subunit H) (Vacuolar proton pump subunit H) chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase, V1 domain [GO:0000221]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035] locus:2083881; AT3G42050 ATPase subunit Probable V-type proton ATPase subunit H (V-ATPase subunit H) (Vacuolar proton pump subunit H),Os07g0549700 protein Q84ZC0,C7J582 VATH_ORYSJ,C7J582_ORYSJ Os07g0549700 LOC_Os07g36470 P0534A03.126,Os07g0549700 Os07g0549700 OSNPB_070549700 FUNCTION: Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}. ENOG411DSYB MJM18.1 O82746,Q9FGL6 O82746_ARATH,Q9FGL6_ARATH Molybdenum cofactor sulfurase-like protein (Uncharacterized protein AT4g22980) (Uncharacterized protein F7H19.160),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 64051,64418 Molybdenum cofactor sulfurase-like protein (Uncharacterized protein AT4g22980) (Uncharacterized protein F7H19.160),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein catalytic activity [GO:0003824],transferase activity [GO:0016740] locus:2127253;,locus:2166523; AT4G22980,AT5G51920 Molybdenum cofactor Os08g0545000 protein (cDNA clone:J023097I24, full insert sequence) Q6ZBH4 Q6ZBH4_ORYSJ Os08g0545000 Os08g0545000 OJ1323_A06.1 OsJ_28160 OSNPB_080545000 P0623F08.34 ENOG411DSYC GA2OX8 O49561,F4JIN8,F4JIN9 G2OX8_ARATH,F4JIN8_ARATH,F4JIN9_ARATH Gibberellin 2-beta-dioxygenase 8 (EC 1.14.11.13) (GA 2-oxidase 8) (Gibberellin 2-beta-hydroxylase 8) (Gibberellin 2-oxidase 8),Gibberellin 2-oxidase 8 In short day conditions mutant formed fewer rosette leaves before bolting.,In short day conditions mutant formed a greater number of cauline leaves.,Longer hypocotyl compared to wild-type when grown in medium- and low-light.,In long day conditions no significant difference in flowering behaviour between mutant and wild-type.,Dwarf (growth under long-day photoperiod). Long hypocotyl; Few rosette leaves, many cauline leaves under short days; Germination resistant to ancymidol (herbicide)-R. Amasino-2003 FUNCTION: Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs. Hydroxylates the C20-GA GA12 and GA53, but is not active on C19-GAs, like GA1, GA4, GA9 and GA20. {ECO:0000269|PubMed:12509528}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. 1.14.11.13; 1.14.11.13 39086,20405,17160 Gibberellin 2-beta-dioxygenase 8 (EC 1.14.11.13) (GA 2-oxidase 8) (Gibberellin 2-beta-hydroxylase 8) (Gibberellin 2-oxidase 8),Gibberellin 2-oxidase 8 C-20 gibberellin 2-beta-dioxygenase activity [GO:0052635]; metal ion binding [GO:0046872]; gibberellin biosynthetic process [GO:0009686]; gibberellin metabolic process [GO:0009685] locus:2127403; AT4G21200 Gibberellin 2-beta-dioxygenase Gibberellin 2-beta-dioxygenase 6 (EC 1.14.11.13) (Gibberellin 2-beta-hydroxylase 6) (Gibberellin 2-oxidase 6) (GA 2-oxidase 6) (OsGA2ox6),Os07g0103500 protein (Putative 1-aminocyclopropane-1-carboxylate oxidase 1),Os02g0630300 protein (cDNA clone:002-146-E04, full insert sequence),Os02g0630300 protein (Fragment) Q7XP65,Q8LGZ9,B7F1G2,A0A0P0VLZ5 G2OX6_ORYSJ,Q8LGZ9_ORYSJ,B7F1G2_ORYSJ,A0A0P0VLZ5_ORYSJ GA2OX6 Os04g0522500 LOC_Os04g44150 OsJ_15497 OSJNBa0019D11.23,P0446F04.116 Os07g0103500 OSNPB_070103500,Os02g0630300 OSNPB_020630300 FUNCTION: Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. In vitro, converts GA12 and GA53 to the corresponding 2-beta-hydroxylated products GA110 and GA97, respectively. {ECO:0000269|PubMed:18952778}. MISCELLANEOUS: Plants overexpressing GA2OX6 exhibit extremely dwarf phenotype and are unable to achieve phase transition from vegetative to reproductive growth. {ECO:0000269|PubMed:18952778}. ENOG411DSYM pde194 Q9C712,A0A1P8ARF1 Q9C712_ARATH,A0A1P8ARF1_ARATH Formyl transferase, putative (Formyltransferase),Formyltransferase Seedling lethal (inferred from pigment defect)-D. Meinke-2002 ARA:AT1G66520-MONOMER; 38503,35556 Formyl transferase, putative (Formyltransferase),Formyltransferase methionyl-tRNA formyltransferase activity [GO:0004479],hydroxymethyl-, formyl- and related transferase activity [GO:0016742]; biosynthetic process [GO:0009058] locus:2029012; AT1G66520 Methionyl-trna Met-tRNAi formyl transferase-like (Os01g0687500 protein) (cDNA clone:J023008N17, full insert sequence) Q5N7L5 Q5N7L5_ORYSJ Os01g0687500 Os01g0687500 OsJ_03057 OSNPB_010687500 P0519D04.22 ENOG411DSYN MEE65 F4IW19,Q0WVQ3,F4I4V4,F4IN86,A0A1I9LNM0,A0A1P8B2F1,A0A1P8B2F7 F4IW19_ARATH,Q0WVQ3_ARATH,F4I4V4_ARATH,F4IN86_ARATH,A0A1I9LNM0_ARATH,A0A1P8B2F1_ARATH,A0A1P8B2F7_ARATH Cyclin/Brf1-like TBP-binding protein,Cyclin/Brf1-like TBP-binding protein (Putative transcription factor),Cyclin/Brf1-like TBP-binding domain-containing protein 62954,68009,28598,61429,58856,54006,50018 Cyclin/Brf1-like TBP-binding protein,Cyclin/Brf1-like TBP-binding protein (Putative transcription factor),Cyclin/Brf1-like TBP-binding domain-containing protein transcription factor TFIIIB complex [GO:0000126]; TBP-class protein binding [GO:0017025]; TFIIIB-type transcription factor activity [GO:0001026]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; transcription from RNA polymerase III promoter [GO:0006383],transcription factor TFIIIB complex [GO:0000126]; TBP-class protein binding [GO:0017025]; TFIIIB-type transcription factor activity [GO:0001026]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; embryo development ending in seed dormancy [GO:0009793]; transcription from RNA polymerase III promoter [GO:0006383] locus:2055600;,locus:2083579;,locus:4515102612;,locus:2038786; AT2G45100,AT3G09360,AT1G30455,AT2G01280 transcription factor Os05g0305100 protein Q0DJB2 Q0DJB2_ORYSJ Os05g0305100 Os05g0305100 OsJ_17983 OSNPB_050305100 ENOG411DSYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411DSYI MTHFR2,MTHFR1 O80585,Q9SE60,F4JAK1 MTHR2_ARATH,MTHR1_ARATH,F4JAK1_ARATH Methylenetetrahydrofolate reductase 2 (AtMTHFR2) (EC 1.5.1.20),Methylenetetrahydrofolate reductase 1 (AtMTHFR1) (EC 1.5.1.20),Methylenetetrahydrofolate reductase (EC 1.5.1.20) FUNCTION: The probable reversibility of the MTHFR reaction in plants suggests that they can metabolize the methyl group of 5,10-methylenetetrahydrofolate to serine, sugars and starch. {ECO:0000269|PubMed:10593891}. PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion.,PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. {ECO:0000256|RuleBase:RU004254}. ARA:AT2G44160-MONOMER;,ARA:AT3G59970-MONOMER; R-ATH-196757; 1.5.1.20; Carbon fixation pathways in prokaryotes (00720),Microbial metabolism in diverse environments (01120),One carbon pool by folate (00670),Metabolic pathways (01100) 1.5.1.20 66802,66288,45612 Methylenetetrahydrofolate reductase 2 (AtMTHFR2) (EC 1.5.1.20),Methylenetetrahydrofolate reductase 1 (AtMTHFR1) (EC 1.5.1.20),Methylenetetrahydrofolate reductase (EC 1.5.1.20) cytosol [GO:0005829]; methylenetetrahydrofolate reductase (NAD(P)H) activity [GO:0004489]; methionine metabolic process [GO:0006555]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate interconversion [GO:0035999],cytosol [GO:0005829]; methylenetetrahydrofolate reductase (NAD(P)H) activity [GO:0004489]; methionine biosynthetic process [GO:0009086]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate interconversion [GO:0035999],cytosol [GO:0005829]; methylenetetrahydrofolate reductase (NAD(P)H) activity [GO:0004489]; methionine biosynthetic process [GO:0009086]; tetrahydrofolate interconversion [GO:0035999] locus:2051789;,locus:2080477; AT2G44160,AT3G59970 Methylenetetrahydrofolate reductase Probable methylenetetrahydrofolate reductase (EC 1.5.1.20),Os03g0815200 protein (Fragment) Q75HE6,A0A0P0W4Q0,A0A0P0W573 MTHR_ORYSJ,A0A0P0W4Q0_ORYSJ,A0A0P0W573_ORYSJ Os03g0815200 LOC_Os03g60090 OSJNBa0024F18.2 OSJNBb0042K11.1,Os03g0815200 OSNPB_030815200 FUNCTION: The probable reversibility of the MTHFR reaction in plants suggests that they can metabolize the methyl group of 5,10-methylenetetrahydrofolate to serine, sugars and starch. {ECO:0000250}. ENOG411DSYJ NUP85 Q8RXH2 NUP85_ARATH Nuclear pore complex protein NUP85 (Nuclear pore complex protein NUP75) (Nucleoporin 75) (Nucleoporin 85) FUNCTION: Functions as component of the nuclear pore complex (NPC). {ECO:0000250}. 80849 Nuclear pore complex protein NUP85 (Nuclear pore complex protein NUP75) (Nucleoporin 75) (Nucleoporin 85) nuclear envelope [GO:0005635]; nuclear pore outer ring [GO:0031080]; structural constituent of nuclear pore [GO:0017056]; mRNA export from nucleus [GO:0006406]; positive regulation of transcription, DNA-templated [GO:0045893]; protein import into nucleus [GO:0006606] locus:2123757; AT4G32910 Nuclear pore complex protein Os01g0746200 protein (Putative nucleoporin Nup75) Q8LIZ0,Q5JLX7 Q8LIZ0_ORYSJ,Q5JLX7_ORYSJ Os01g0746200 OSJNBa0014K08.33-1 OSNPB_010746200,OSJNBa0014K08.33-2 Os01g0746200 OSNPB_010746200 ENOG411DSYK PAO3 Q9LYT1 PAO3_ARATH Polyamine oxidase 3 (AtPAO3) (EC 1.5.3.17) Male gametophyte defective; Homozygotes are viable: Reduced fertility-S. Zhang-2010 FUNCTION: Flavoenzyme that catalyzes the sequential oxidation of spermine to spermidine, and of spermidine to putrescine. Substrate preference is spermidine > spermine > N(1)-acetylspermidine > N(1)-acetylspermine. No activity detected when diamines (agmatine, cadaverine or putrescine) or N(8)-acetylspermidine are used as substrates. {ECO:0000269|PubMed:18583528}. PATHWAY: Amine and polyamine degradation; spermine degradation. ARA:AT3G59050-MONOMER;MetaCyc:AT3G59050-MONOMER; 1.5.3.17; 1.5.3.17 54132 Polyamine oxidase 3 (AtPAO3) (EC 1.5.3.17) peroxisome [GO:0005777]; N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [GO:0052904]; N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [GO:0052903]; polyamine oxidase activity [GO:0046592]; spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity [GO:0052902]; spermine:oxygen oxidoreductase (spermidine-forming) activity [GO:0052901]; polyamine catabolic process [GO:0006598]; spermine catabolic process [GO:0046208] TISSUE SPECIFICITY: Expressed at similar levels in all tissues tested. Highest expression is seen in siliques. {ECO:0000269|PubMed:18583528}. locus:2077670; AT3G59050 Polyamine oxidase NA NA NA NA NA NA NA ENOG411DSY4 KPHMT1,KPHMT2 O82357,Q9M315 PANB1_ARATH,PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial (EC 2.1.2.11) (Ketopantoate hydroxymethyltransferase 1),3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial (EC 2.1.2.11) (Ketopantoate hydroxymethyltransferase 2) FUNCTION: Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate. {ECO:0000269|PubMed:14675432}. PATHWAY: Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 1/2. ARA:AT2G46110-MONOMER;MetaCyc:AT2G46110-MONOMER; 2.1.2.11 36693,37364 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial (EC 2.1.2.11) (Ketopantoate hydroxymethyltransferase 1),3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial (EC 2.1.2.11) (Ketopantoate hydroxymethyltransferase 2) mitochondrion [GO:0005739]; 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [GO:0003864]; metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168]; pantothenate biosynthetic process [GO:0015940],mitochondrion [GO:0005739]; 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [GO:0003864]; cobalt ion binding [GO:0050897]; methyltransferase activity [GO:0008168]; zinc ion binding [GO:0008270]; pantothenate biosynthetic process [GO:0015940] locus:2062969;,locus:2082847; AT2G46110,AT3G61530 3-methyl-2-oxobutanoate 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial (EC 2.1.2.11) (Ketopantoate hydroxymethyltransferase 1),3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial (EC 2.1.2.11) (Ketopantoate hydroxymethyltransferase 2),Os01g0225400 protein (Fragment) Q9AWZ8,Q9AWZ7,A0A0P0V0B3 PANB1_ORYSJ,PANB2_ORYSJ,A0A0P0V0B3_ORYSJ KPHMT1 PANB1 Os01g0225400 LOC_Os01g12560 P0443E07.6 P0492F05.15,KPHMT2 PANB2 Os01g0225500 LOC_Os01g12570 P0443E07.7 P0492F05.16,Os01g0225400 OSNPB_010225400 FUNCTION: Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate. {ECO:0000250}. ENOG411DSY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Transcription factor TGA2.3 (OsNIF3) (bZIP transcription factor 3) (OsbZIP03) Q0JNL3 TGA23_ORYSJ TGA2.3 Os01g0279900 LOC_Os01g17260 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411DSY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0027H09.3 protein (Os04g0127800 protein) (cDNA clone:001-117-D07, full insert sequence),Expressed protein (Os12g0245100 protein),Os12g0245000 protein (Fragment) Q7XP36,Q2QV37,A0A0N7KTT6,A0A0P0Y8L2 Q7XP36_ORYSJ,Q2QV37_ORYSJ,A0A0N7KTT6_ORYSJ,A0A0P0Y8L2_ORYSJ Os04g0127800 OSJNBa0027H09.3 OSNPB_040127800,Os12g0245100 LOC_Os12g14150 Os12g0245100 OsJ_36582 OSNPB_120245100,Os12g0245000 OSNPB_120245000 ENOG411DSY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411DSY0 TRO Q9C8J7 TRO_ARATH Protein TRAUCO (Protein ASH2 RELATIVE) (AtASH2R) DISRUPTION PHENOTYPE: Embryo lethality when homozygous. {ECO:0000269|PubMed:20118203, ECO:0000269|PubMed:21423667}. embryo lethal Embryo defective; Globular-Aquea-2010 FUNCTION: Trithorax-group gene homolog required for early embryogenesis (PubMed:20118203, PubMed:21423667). Required for the expression of FLC and FLC homologs and represses flowering (PubMed:21423667). Required for proper leaf growth and development (PubMed:21423667). Part of COMPASS-like complexes responsible for H3K4 trimethylation, but not for di- or mono-methylation of histone H3 'Lys-4' (PubMed:21423667). Binds to target loci chromatin, increasing H3K4 trimethylation and causing activation of the gene (PubMed:21423667). {ECO:0000269|PubMed:20118203, ECO:0000269|PubMed:21423667}. MISCELLANEOUS: Named TRAUCO (TRO) in honor of the fertility mythology from the Chiloe island in southern Chile. {ECO:0000303|PubMed:20118203}. R-ATH-3214841; 55507 Protein TRAUCO (Protein ASH2 RELATIVE) (AtASH2R) nucleus [GO:0005634]; Set1C/COMPASS complex [GO:0048188]; chromatin DNA binding [GO:0031490]; transcription regulatory region DNA binding [GO:0044212]; embryo development ending in seed dormancy [GO:0009793]; histone H3-K4 trimethylation [GO:0080182]; simple leaf morphogenesis [GO:0060776]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Expressed during embryo development. {ECO:0000269|PubMed:20118203}. TISSUE SPECIFICITY: Ubiquitous. Highest expression in pollen and seeds. Expressed in the embryo and the suspensor cells. Detected in cotyledons, roots, leaf hydathodes, sepals, anthers and pollen grains (PubMed:20118203). Strongly expressed in root tips, shoot apices, vascular tissues, developing embryos and endosperms (PubMed:21423667). {ECO:0000269|PubMed:20118203, ECO:0000269|PubMed:21423667}. locus:2033954; AT1G51450 set1 Ash2 histone methyltransferase complex subunit Os11g0146500 protein (SPRY domain containing protein, expressed) (cDNA clone:J033110K08, full insert sequence),Os12g0143200 protein (SPRY domain containing protein, expressed),Os11g0145700 protein,Os11g0146500 protein (Fragment) Q2RAM1,Q2QXT8,A0A0P0XYP4,A0A0P0XYV9 Q2RAM1_ORYSJ,Q2QXT8_ORYSJ,A0A0P0XYP4_ORYSJ,A0A0P0XYV9_ORYSJ Os11g0146500 LOC_Os11g04930 Os11g0146500 OSNPB_110146500,Os12g0143200 LOC_Os12g04930 Os12g0143200 OsJ_35193 OSNPB_120143200,Os11g0145700 OSNPB_110145700,Os11g0146500 OSNPB_110146500 ENOG411DSY1 ATH1 P48731 ATH1_ARATH Homeobox protein ATH1 Under LD conditions the flowering time of ath1-1 is indistinguishable from that of wild-type Col-8. In contrast under SD conditions ath1-1 plants flower with approximately 20% fewer leaves than wild-type controls.,ath1-1 mutants showed a 95% reduction in FLC expression and a resulting increase of FT but had no significant effect on the expression of FRI.,Significant reduction in flowering time.,Significant though not complete reduction in flowering.,No additive effect on flowering time.,Double mutant enhances the SAM phenotype. 80% of double mutants show shoot termination after germination and production of the first two sets of leaves. Shoots regenerate at a low frequency.,Shoot apex arrests prematurely in less than 50% of double mutants. This occurs around 2 weeks post germination or after 8 or so sets of leaves are made. The meristems are reduced in size. After growth resumption new abnormally shaped leaves are produced and the plants eventually flower.,In triple mutants the primary apical meristem terminates after germination-usually being consumed in the formation of a single terminal leaf. Growth can resume with the formation of new meristems however the phyllotaxy is abnormal.,Phenotype not described. Slightly early flowering under short days-S. Smeekens-2007 FUNCTION: Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. 53900 Homeobox protein ATH1 nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; floral organ abscission [GO:0010227]; negative regulation of cell proliferation [GO:0008285]; photomorphogenesis [GO:0009640]; regulation of gibberellin biosynthetic process [GO:0010371]; shoot organ boundary specification [GO:0090470]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}. TISSUE SPECIFICITY: Most abundant in flowers. locus:2005494; AT4G32980 homeobox Os06g0562300 protein,Os02g0226600 protein (Putative homeobox protein),Os03g0350900 protein Q0DBI4,Q6H6J2,A0A0P0VXF4 Q0DBI4_ORYSJ,Q6H6J2_ORYSJ,A0A0P0VXF4_ORYSJ Os06g0562300 Os06g0562300 OSNPB_060562300,Os02g0226600 OsJ_05952 OSNPB_020226600 P0495C02.27,Os03g0350900 OSNPB_030350900 ENOG411DSY2 HDA8,HDA08 Q94EJ2,A0A1P8AMF5 HDA8_ARATH,A0A1P8AMF5_ARATH Histone deacetylase 8 (EC 3.5.1.98),Histone deacetylase 8 FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250}. 3.5.1.98 41263,35347 Histone deacetylase 8 (EC 3.5.1.98),Histone deacetylase 8 nucleus [GO:0005634]; metal ion binding [GO:0046872]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2201826; AT1G08460 Histone deacetylase Histone deacetylase (EC 3.5.1.98),Os05g0440632 protein Q60DG6,Q60DG7,A0A0P0WN24 Q60DG6_ORYSJ,Q60DG7_ORYSJ,A0A0P0WN24_ORYSJ Os05g0440300 Os05g0440300 B1110B01.3 OsJ_18693 OSNPB_050440300,Os05g0440250 Os05g0440100 B1110B01.2 OsJ_18692 OSNPB_050440250,Os05g0440632 OSNPB_050440632 ENOG411DSY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411DSY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 28 N-terminal domain Os07g0419500 protein (cDNA, clone: J075127D07, full insert sequence) B7F986 B7F986_ORYSJ Os07g0419500 OsJ_23986 OSNPB_070419500 ENOG411DSY9 SS2 Q9MAC8 SSY2_ARATH Starch synthase 2, chloroplastic/amyloplastic (AtSS2) (EC 2.4.1.21) (Soluble starch synthase II) DISRUPTION PHENOTYPE: Reduced plant growth under short day photopheriod conditions and starch granules with alterated morphology. {ECO:0000269|PubMed:18811962}. FUNCTION: Involved in the synthesis of glycan chains within amylopectin in leaves. Is required to produce chains with a degree of polymerization of 12 to 25 (DP12-DP25). {ECO:0000269|PubMed:18811962}. PATHWAY: Glycan biosynthesis; starch biosynthesis. 2.4.1.21 87593 Starch synthase 2, chloroplastic/amyloplastic (AtSS2) (EC 2.4.1.21) (Soluble starch synthase II) amyloplast [GO:0009501]; chloroplast [GO:0009507]; alpha-1,4-glucan synthase activity [GO:0033201]; glycogen (starch) synthase activity [GO:0004373]; starch synthase activity [GO:0009011]; amylopectin biosynthetic process [GO:0010021]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:17217470}. locus:2102102; AT3G01180 starch synthase Soluble starch synthase 2-3, chloroplastic/amyloplastic (EC 2.4.1.21) (Soluble starch synthase II-3) (Starch synthase IIa),Soluble starch synthase 2-2, chloroplastic/amyloplastic (EC 2.4.1.21) (Soluble starch synthase II-2),Soluble starch synthase 2-1, chloroplastic/amyloplastic (EC 2.4.1.21) (Soluble starch synthase II-1),Starch synthase, chloroplastic/amyloplastic (EC 2.4.1.-) (Fragment) Q0DDE3,Q6Z2T8,Q7XE48,Q0DXM0,A0A0P0VPK3 SSY23_ORYSJ,SSY22_ORYSJ,SSY21_ORYSJ,Q0DXM0_ORYSJ,A0A0P0VPK3_ORYSJ SSII-3 ALK Os06g0229800 LOC_Os06g12450 P0525F01.23,SSII-2 SS2 Os02g0744700 LOC_Os02g51070 OJ1118_G04.8 OJ1734_E02.35,SSII-1 Os10g0437600 LOC_Os10g30156 OSJNBb0016G17.2,Os02g0744700 Os02g0744700 OSNPB_020744700,Os02g0744700 OSNPB_020744700 FUNCTION: Plays an important role during endosperm starch synthesis. Determines the type of amylopectin structure of starch grain. Synthesizes long B1 amylopectin chains by elongating short A and B1 chains, independently of the other soluble starch synthases. Barely active in japonica subspecies. {ECO:0000269|PubMed:14740212, ECO:0000269|PubMed:16027975}.,FUNCTION: May contribute to the deposition of transient starch in chloroplasts of leaves.,FUNCTION: May be involved in starch synthesis in endosperm amyloplasts and contribute to the deposition of transient starch in chloroplasts of leaves. {ECO:0000269|PubMed:14740212}. MISCELLANEOUS: Increased activity due to variations in subspecies indica is associated with the synthesis of the L-type amylopectin, which contains much lower proportion of short amylopectin chains than the S-type amylopectin found in most japonica varieties. The difference in amylopectin chain composition explains why starch from japonica subspecies has a lower gelatinisation temperature than starch from indica subspecies. ENOG411EJN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E249 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic peptide chain release factor subunit 'putative peptide chain release factor subunit 1 (ERF1), PF03463 (Os05g0373900 protein) (Putative peptide chain release factor subunit 1 (ERF1)) (cDNA clone:002-112-G01, full insert sequence) Q75K79 Q75K79_ORYSJ Os05g0373900 Os05g0373900 OJ1005_E12.2 OsJ_18318 OSJNBa0025P09.17 OSNPB_050373900 ENOG411E248 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os04g0137700 protein,Os04g0138066 protein A0A0P0W6Q3,A0A0P0W6F2 A0A0P0W6Q3_ORYSJ,A0A0P0W6F2_ORYSJ Os04g0137700 OSNPB_040137700,Os04g0138066 OSNPB_040138066 ENOG411E241 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1005) Expressed protein (Os03g0773000 protein),Os07g0252100 protein Q7XZV9,Q6YVM6 Q7XZV9_ORYSJ,Q6YVM6_ORYSJ LOC_Os03g56220 Os03g0773000 OSJNBb0094O03.10 OSNPB_030773000,P0669H03.8 Os07g0252100 OSNPB_070252100 ENOG411E240 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 Formin-like protein 4 (OsFH4),Formin-like protein (Fragment) Q8H8K7,A0A0P0XTE6 FH4_ORYSJ,A0A0P0XTE6_ORYSJ FH4 Os10g0347800 LOC_Os10g20710 OSJNBb0078C13.8,Os10g0347800 OSNPB_100347800 ENOG411E243 PBL12 O64842 PBL12_ARATH Probable serine/threonine-protein kinase PBL12 (EC 2.7.11.1) (PBS1-like protein 12) (Root-specific kinase 1) FUNCTION: May play a role in the signal transduction pathway of osmotic stress (Probable). May be involved in plant defense signaling (By similarity). {ECO:0000250|UniProtKB:O48814, ECO:0000305|PubMed:7655506}. 2.7.11.1 48086 Probable serine/threonine-protein kinase PBL12 (EC 2.7.11.1) (PBS1-like protein 12) (Root-specific kinase 1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed specifically in roots. {ECO:0000269|PubMed:7655506}. locus:2057770; AT2G26290 serine threonine-protein kinase At5g01020-like NA NA NA NA NA NA NA ENOG411E242 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Os08g0171333 protein Q6YYK8 Q6YYK8_ORYSJ Os08g0171333 OJ1590_E05.19 OsJ_29526 OSNPB_080171333 ENOG411E245 GLIP4 Q9LJP1,A0A1I9LLT5 GRIP4_ARATH,A0A1I9LLT5_ARATH GDSL esterase/lipase 4 (EC 3.1.1.-) (Extracellular lipase 4),GDSL-motif lipase 4 ARA:AT3G14225-MONOMER; 3.1.1.- 42029,41601 GDSL esterase/lipase 4 (EC 3.1.1.-) (Extracellular lipase 4),GDSL-motif lipase 4 extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042],integral component of membrane [GO:0016021]; lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] locus:2090785; AT3G14225 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411E244 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatidylinositol-4-phosphate 5-kinase Os03g0356596 protein (Fragment) C7J0B6 C7J0B6_ORYSJ Os03g0356596 OSNPB_030356596 ENOG411E247 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0623900 protein C7IXC3 C7IXC3_ORYSJ Os01g0623900 Os01g0623900 OSNPB_010623900 ENOG411E246 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Male sterility protein Fatty acyl-CoA reductase (EC 1.2.1.84),Fatty acyl-CoA reductase (EC 1.2.1.84) (Fragment) Q0IZI9,A0A0P0XQL4 Q0IZI9_ORYSJ,A0A0P0XQL4_ORYSJ Os09g0567500 Os09g0567500 OSNPB_090567500,Os09g0567500 OSNPB_090567500 FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. {ECO:0000256|RuleBase:RU363097}. ENOG411E24I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family Os12g0613250 protein (Transposon protein, putative, Mutator sub-class, expressed) Q2QM90 Q2QM90_ORYSJ Os12g0613250 LOC_Os12g41910 OSNPB_120613250 ENOG411E24H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os03g0235900 protein (POT family protein, expressed) (cDNA clone:J013090P16, full insert sequence) Q10PF8 Q10PF8_ORYSJ Os03g0235900 LOC_Os03g13274 OSNPB_030235900 ENOG411E24K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Os10g0459700 protein (Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed),Os10g0459600 protein (Putative exostosin family protein) (Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed) (cDNA clone:002-174-D08, full insert sequence) Q337N1,Q8LMZ1 Q337N1_ORYSJ,Q8LMZ1_ORYSJ LOC_Os10g32170 Os10g0459700 OSNPB_100459700,OSJNBa0013H08.3 LOC_Os10g32160 Os10g0459600 OsJ_31791 OSNPB_100459600 ENOG411E24J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/calcium exchanger protein Os12g0624200 protein (Fragment),Os07g0476401 protein (Fragment) A0A0P0YCN6,A0A0P0X5Z0 A0A0P0YCN6_ORYSJ,A0A0P0X5Z0_ORYSJ Os12g0624200 OSNPB_120624200,Os07g0476401 OSNPB_070476401 ENOG411E24M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arsenical pump membrane protein Silicon efflux transporter LSI2 (Low silicon protein 2),Silicon efflux transporter LSI3 (Low silicon protein 3) Q10SY9,Q9AV23 LSI2_ORYSJ,LSI3_ORYSJ LSI2 SIET1 Os03g0107300 LOC_Os03g01700 OJ1384D03.1 OsJ_09099,LSI3 Os10g0547500 LOC_Os10g39980 OSJNBa0001O14.19 FUNCTION: Silicon efflux transporter involved in silicon transport from the root cells to the apoplast. Is coupled with the silicon influx transporter NIP2-1/LSI1 in both exodermal and endodermal root cells for an efficient silicon transport across the cells into the stele. Silicon is beneficial to plant growth and helps plants to overcome abiotic and biotic stresses by preventing lodging (falling over) and increasing resistance to pests and diseases, as well as other stresses (PubMed:17625566). In the nodes, involved with LSI3 and NIP2-2/LSI6 in silicon intervascular transfer, which is required for the preferential distribution of silicon, such as hyperaccumulation of silicon in the husk (PubMed:26283388). Is coupled with NIP2-1/LSI1 transporter in roots for efficient uptake of arsenite, which is further dispatched in shoots and grains (PubMed:18626020). {ECO:0000269|PubMed:17625566, ECO:0000269|PubMed:18626020, ECO:0000269|PubMed:26283388}.,FUNCTION: Silicon efflux transporter involved in silicon transport in shoots. In the nodes, involved with LSI2 and NIP2-2/LSI6 in silicon intervascular transfer, which is required for the preferential distribution of silicon, such as hyperaccumulation of silicon in the husk. Silicon is beneficial to plant growth and helps plants to overcome abiotic and biotic stresses by preventing lodging (falling over) and increasing resistance to pests and diseases, as well as other stresses. {ECO:0000269|PubMed:26283388}. ENOG411E24N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q9FTW1 Q9FTW1_ORYSJ Os01g0620800 Os01g0620800 OsJ_02642 OSNPB_010620800 P0407B12.34 ENOG411E24A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411E24C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0589400 protein Q5ZC73 Q5ZC73_ORYSJ Os01g0589400 OSNPB_010589400 P0415C01.12 ENOG411E24B VPS37-2,VPS37-1 Q3EBL9,Q9SCP9 VP372_ARATH,VP371_ARATH Vacuolar protein-sorting-associated protein 37 homolog 2 (AtVPS37-2) (ESCRT-I complex subunit VPS37 homolog 2),Vacuolar protein-sorting-associated protein 37 homolog 1 (AtVPS37-1) (ESCRT-I complex subunit VPS37 homolog 1) FUNCTION: Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs) (By similarity). {ECO:0000250}. 24987,24940 Vacuolar protein-sorting-associated protein 37 homolog 2 (AtVPS37-2) (ESCRT-I complex subunit VPS37 homolog 2),Vacuolar protein-sorting-associated protein 37 homolog 1 (AtVPS37-1) (ESCRT-I complex subunit VPS37 homolog 1) ESCRT I complex [GO:0000813]; protein transport [GO:0015031] locus:2040560;,locus:2102008; AT2G36680,AT3G53120 vacuolar protein-sorting-associated protein 37 homolog Modifier of rudimentary protein, expressed (Os03g0572300 protein) (cDNA clone:006-304-F12, full insert sequence),Modifier of rudimentary protein, expressed (Os03g0186800 protein) (cDNA clone:J023083K06, full insert sequence) Q10HX5,Q10QR4 Q10HX5_ORYSJ,Q10QR4_ORYSJ LOC_Os03g37580 Os03g0572300 OSNPB_030572300,LOC_Os03g08770 Os03g0186800 OSNPB_030186800 ENOG411E24E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os05g0537100 protein (WRKY transcription factor 7) Q6IES4 Q6IES4_ORYSJ WRKY7 Os05g0537100 OJ1741_B01.16 OsJ_19359 OSNPB_050537100 ENOG411E24D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E24G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family OSJNBa0044K18.3 protein (Os04g0477000 protein) (cDNA clone:J013126J03, full insert sequence) Q7XK42 Q7XK42_ORYSJ Os04g0477000 Os04g0477000 OSJNBa0044K18.3 OSNPB_040477000 ENOG411E24F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein NA NA NA NA NA NA NA ENOG411E24Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein-like (Os01g0374400 protein),Os01g0939200 protein (Fragment),Os07g0177000 protein Q5ZCW4,A0A0P0VCS8,A0A0P0X3G7 Q5ZCW4_ORYSJ,A0A0P0VCS8_ORYSJ,A0A0P0X3G7_ORYSJ Os01g0374400 B1045D11.27 OsJ_01825 OSNPB_010374400,Os01g0939200 OSNPB_010939200,Os07g0177000 OSNPB_070177000 ENOG411E24X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os01g0177400 protein,Os05g0178100 protein,Os04g0517600 protein (Fragment),Os05g0257800 protein Q0JQ78,A0A0P0WII8,A0A0P0WCT7,A0A0P0WJV5 Q0JQ78_ORYSJ,A0A0P0WII8_ORYSJ,A0A0P0WCT7_ORYSJ,A0A0P0WJV5_ORYSJ Os01g0177400 Os01g0177400 OSNPB_010177400,Os05g0178100 OSNPB_050178100,Os04g0517600 OSNPB_040517600,Os05g0257800 OSNPB_050257800 ENOG411E24Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_CA Os04g0370900 protein (cDNA, clone: J013067H13, full insert sequence),OSJNBa0016N04.10 protein (Os04g0368000 protein),OSJNBb0058J09.13 protein (Os04g0275100 protein) (cDNA clone:002-112-H08, full insert sequence),Os04g0371000 protein,OSJNBa0016N04.9 protein (Os04g0367900 protein),OSJNBa0016N04.12 protein (Os04g0368300 protein),Os04g0366800 protein,Os04g0371275 protein,Os04g0370100 protein,Os04g0371200 protein,Os04g0371100 protein,Os04g0368800 protein,Os04g0370900 protein (Fragment),Os04g0369600 protein,Os04g0366401 protein,Os02g0624100 protein,Os02g0623600 protein B7F891,Q7XVH6,Q7XWW6,B9FEQ5,Q7XVH5,Q7XVH8,A0A0P0W950,A0A0P0W970,A0A0P0W979,A0A0P0W9R0,A0A0N7KIX3,A0A0P0W972,A0A0P0W9P1,A0A0P0W996,A0A0P0W919,A0A0P0VM56,A0A0P0VM64 B7F891_ORYSJ,Q7XVH6_ORYSJ,Q7XWW6_ORYSJ,B9FEQ5_ORYSJ,Q7XVH5_ORYSJ,Q7XVH8_ORYSJ,A0A0P0W950_ORYSJ,A0A0P0W970_ORYSJ,A0A0P0W979_ORYSJ,A0A0P0W9R0_ORYSJ,A0A0N7KIX3_ORYSJ,A0A0P0W972_ORYSJ,A0A0P0W9P1_ORYSJ,A0A0P0W996_ORYSJ,A0A0P0W919_ORYSJ,A0A0P0VM56_ORYSJ,A0A0P0VM64_ORYSJ Os04g0370900 OsJ_14461 OSNPB_040370900,Os04g0368000 OsJ_14446 OSJNBa0016N04.10 OSNPB_040368000,Os04g0275100 Os04g0275100 OSJNBb0058J09.13 OSNPB_040275100,Os04g0371000 OsJ_14462 OSNPB_040371000,Os04g0367900 OsJ_14445 OSJNBa0016N04.9 OSNPB_040367900,Os04g0368300 OsJ_14447 OSJNBa0016N04.12 OSNPB_040368300,Os04g0366800 OSNPB_040366800,Os04g0371275 OSNPB_040371275,Os04g0370100 OSNPB_040370100,Os04g0371200 OSNPB_040371200,Os04g0371100 OSNPB_040371100,Os04g0368800 OSNPB_040368800,Os04g0370900 OSNPB_040370900,Os04g0369600 OSNPB_040369600,Os04g0366401 OSNPB_040366401,Os02g0624100 OSNPB_020624100,Os02g0623600 OSNPB_020623600 ENOG411E24Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase OSJNBb0062H02.3 protein (Os04g0321700 protein) (cDNA clone:J013000M18, full insert sequence),Os12g0257000 protein (Fragment) Q7X7Y5,A0A0N7KTU2 Q7X7Y5_ORYSJ,A0A0N7KTU2_ORYSJ Os04g0321700 OsJ_14259 OSJNBb0062H02.3 OSNPB_040321700,Os12g0257000 OSNPB_120257000 ENOG411E24P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family Non-phototropic hypocotyl 3-like (Os06g0184500 protein) Q5SMN3 Q5SMN3_ORYSJ Os06g0184500 Os06g0184500 OsJ_20369 OSNPB_060184500 P0554A06.16 ENOG411E24S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription DNA-dependent B3 domain-containing protein LOC_Os12g40080,B3 domain-containing protein Os12g0591400,Os12g0591300 protein (Fragment),Os12g0591500 protein Q2QMT6,Q2QMT7,A0A0P0YC05,A0A0P0YD97 Y1208_ORYSJ,Y1214_ORYSJ,A0A0P0YC05_ORYSJ,A0A0P0YD97_ORYSJ Os12g0591400 LOC_Os12g40080,Os12g0591300 LOC_Os12g40070,Os12g0591300 OSNPB_120591300,Os12g0591500 OSNPB_120591500 ENOG411E24R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vesicle transport v-SNARE protein N-terminus Os01g0560200 protein (Vesicle transport v-SNARE (Vesicle soluble NSF attachment protein receptor) protein-like) (cDNA clone:J033079N06, full insert sequence) Q8S9S2 Q8S9S2_ORYSJ Os01g0560200 B1064G04.46 OSNPB_010560200 ENOG411E24U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACT domain Os08g0103200 protein (Protein kinase family-like),Os08g0103000 protein (Fragment) Q69U55,A0A0P0XAR4,A0A0N7KP48 Q69U55_ORYSJ,A0A0P0XAR4_ORYSJ,A0A0N7KP48_ORYSJ Os08g0103200 OsJ_25734 OSNPB_080103200 P0015C07.28,Os08g0103000 OSNPB_080103000 ENOG411E24T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0255900 protein Q0DTC8 Q0DTC8_ORYSJ Os03g0255900 OSNPB_030255900 ENOG411E24W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DIL NA NA NA NA NA NA NA ENOG411EJ41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0688000 protein A0A0P0Y5K0 A0A0P0Y5K0_ORYSJ Os11g0688000 OSNPB_110688000 ENOG411EJ40 REM22,MGO3.11 Q9STF1,Q9FHB0,Q9LST3,Q9LVG1,A0A1P8BAD7,A0A1P8BE83,A0A1P8BE88,A0A1P8BAC7,A0A1P8BAE5,A0A1P8BE84 REM22_ARATH,Y5014_ARATH,Y5142_ARATH,Y5013_ARATH,A0A1P8BAD7_ARATH,A0A1P8BE83_ARATH,A0A1P8BE88_ARATH,A0A1P8BAC7_ARATH,A0A1P8BAE5_ARATH,A0A1P8BE84_ARATH B3 domain-containing protein REM22 (Protein REPRODUCTIVE MERISTEM 22),B3 domain-containing protein At5g60140,B3 domain-containing protein At5g60142,B3 domain-containing protein At5g60130,AP2/B3-like transcriptional factor family protein,AP2/B3-like transcriptional factor family protein (Fragment) 31951,37084,40190,37181,34281,32030,37191,36808,27890,27850 B3 domain-containing protein REM22 (Protein REPRODUCTIVE MERISTEM 22),B3 domain-containing protein At5g60140,B3 domain-containing protein At5g60142,B3 domain-containing protein At5g60130,AP2/B3-like transcriptional factor family protein,AP2/B3-like transcriptional factor family protein (Fragment) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2102812;,locus:2164135;,locus:4515103743;,locus:2164180; AT3G46770,AT5G60140,AT5G60142,AT5G60130 B3 NA NA NA NA NA NA NA ENOG411EJ43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease T2 family NA NA NA NA NA NA NA ENOG411EJ42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) Os09g0389300 protein,Os11g0299400 protein Q6H4L0,A0A0P0Y1M9 Q6H4L0_ORYSJ,A0A0P0Y1M9_ORYSJ OSJNBa0025E03.4 Os09g0389300 OSNPB_090389300,Os11g0299400 OSNPB_110299400 ENOG411EJ45 Q9ZQ60,Q4PSE7,Q3E960,Q9ZQR2,O82236,Q9SN66,Q9SXC7,F4HSY3,F4HSY9,F4HSY5 FB102_ARATH,FB262_ARATH,FB337_ARATH,FB103_ARATH,O82236_ARATH,Q9SN66_ARATH,Q9SXC7_ARATH,F4HSY3_ARATH,F4HSY9_ARATH,F4HSY5_ARATH F-box protein At2g14290,F-box protein At5g25290,Probable F-box protein At5g25300,F-box protein At2g14500,F-box protein (DUF295) (Uncharacterized protein At2g24080),F-box family protein (Uncharacterized protein AT4g10820) (Uncharacterized protein F25I24.30),F-box protein (DUF295) (T17H3.4),F-box protein (DUF295),F-box family protein 40840,46334,55263,40314,42265,31188,47815,44656,42463,14400 F-box protein At2g14290,F-box protein At5g25290,Probable F-box protein At5g25300,F-box protein At2g14500,F-box protein (DUF295) (Uncharacterized protein At2g24080),F-box family protein (Uncharacterized protein AT4g10820) (Uncharacterized protein F25I24.30),F-box protein (DUF295) (T17H3.4),F-box protein (DUF295),F-box family protein locus:2058053;,locus:2145447;,locus:2145462;,locus:2055180;,locus:2061431;,locus:2123381;,locus:2196884;,locus:2196924;,locus:2196894; AT2G14290,AT5G25290,AT5G25300,AT2G14500,AT2G24080,AT4G10820,AT1G27540,AT1G27580,AT1G27550 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EJ47 Q3EB05 Q3EB05_ARATH RNA-directed DNA polymerase (Reverse transcriptase)-related family protein 32472 RNA-directed DNA polymerase (Reverse transcriptase)-related family protein RNA-directed DNA polymerase activity [GO:0003964] locus:2086019; AT3G25720 CONTAINS InterPro DOMAIN s RNA-directed DNA polymerase (reverse transcriptase) related (InterPro IPR015706) NA NA NA NA NA NA NA ENOG411EJ46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EJ49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein NA NA NA NA NA NA NA ENOG411EJ4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ4C MJG14.10 A0A1P8BF65,A0A1P8BF68,F4K5W7 A0A1P8BF65_ARATH,A0A1P8BF68_ARATH,F4K5W7_ARATH O-methyltransferase family protein R-ATH-209931; 20394,26142,37316 O-methyltransferase family protein O-methyltransferase activity [GO:0008171],O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438] locus:2166193; AT5G37170 Dimerisation domain NA NA NA NA NA NA NA ENOG411EJ4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Platelet-activating factor acetylhydrolase isoform II NA NA NA NA NA NA NA ENOG411EJ4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EJ4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os07g0421600 protein (Putative benzoyl coenzyme A) Q84PQ3 Q84PQ3_ORYSJ B1123E10.118 Os07g0421600 OsJ_24001 OSNPB_070421600 ENOG411EJ4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EJ4K SINE3 Q9C900 SINE3_ARATH Protein SINE3 21284 Protein SINE3 integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635] locus:2084334; AT3G06600 NA NA NA NA NA NA NA NA ENOG411EJ4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM NA NA NA NA NA NA NA ENOG411EJ4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: mutS homolog 4 (E. coli) NA NA NA NA NA NA NA ENOG411EJ4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-box zinc finger NA NA NA NA NA NA NA ENOG411EJ4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: transposon protein NA NA NA NA NA NA NA ENOG411EJ4P T8B10_130 Q9M212 Q9M212_ARATH Transmembrane protein, putative (DUF247) (Uncharacterized protein T8B10_130) 62784 Transmembrane protein, putative (DUF247) (Uncharacterized protein T8B10_130) integral component of membrane [GO:0016021] locus:2103401; AT3G60470 Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EJ4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJ4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EJ4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411EJ4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EJ4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: NFX1-type zinc finger-containing protein NA NA NA NA NA NA NA ENOG411EJ4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Viral movement protein (MP) NA NA NA NA NA NA NA ENOG411EJ4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BED zinc finger NA NA NA NA NA NA NA ENOG411EJ4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EJNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: helicase NA NA NA NA NA NA NA ENOG411EJNY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: dehydrin NA NA NA NA NA NA NA ENOG411DY75 A0A1P8AP43,F4I4T7 A0A1P8AP43_ARATH,F4I4T7_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 92352,91811 Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2009787; AT1G30290 Pentatricopeptide repeat-containing protein Os12g0615600 protein A0A0P0YC73 A0A0P0YC73_ORYSJ Os12g0615600 OSNPB_120615600 ENOG411DY71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CPDc Os02g0796100 protein A0A0P0VQL1 A0A0P0VQL1_ORYSJ Os02g0796100 OSNPB_020796100 ENOG411E3HW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os05g0129800 protein C7J2F1 C7J2F1_ORYSJ Os05g0129800 Os05g0129800 OSNPB_050129800 ENOG411E3HP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0277200 protein,Os01g0245600 protein,Os01g0292300 protein,Os05g0136100 protein Q6I548,Q0JP43,A0A0P0V200,A0A0P0WHQ0 Q6I548_ORYSJ,Q0JP43_ORYSJ,A0A0P0V200_ORYSJ,A0A0P0WHQ0_ORYSJ Os05g0277200 OSJNBa0055E23.5 OSNPB_050277200,Os01g0245600 Os01g0245600 OSNPB_010245600,Os01g0292300 OSNPB_010292300,Os05g0136100 OSNPB_050136100 ENOG411E3HQ Q8GYX2,Q8GRN0 Q8GYX2_ARATH,Q8GRN0_ARATH At5g20700 (Senescence-associated family protein, putative (DUF581)) (Uncharacterized protein At5g20700/T1M15_100),Cyclin-dependent kinase, putative (DUF581) (Expressed protein) 27739,24969 At5g20700 (Senescence-associated family protein, putative (DUF581)) (Uncharacterized protein At5g20700/T1M15_100),Cyclin-dependent kinase, putative (DUF581) (Expressed protein) kinase activity [GO:0016301] locus:2180429;,locus:2027278; AT5G20700,AT1G74940 Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E3HD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411E3HF RBCX1 Q94AU9 RBCX1_ARATH Chaperonin-like RBCX protein 1, chloroplastic (AtRBCX1) FUNCTION: Chaperone involved in RuBisCO assembly process. {ECO:0000269|PubMed:21922322}. 20199 Chaperonin-like RBCX protein 1, chloroplastic (AtRBCX1) chloroplast thylakoid [GO:0009534]; protein binding involved in protein folding [GO:0044183]; chaperone-mediated protein folding [GO:0061077]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:2134877; AT4G04330 RbcX protein Os08g0425200 protein (cDNA clone:J013034N11, full insert sequence) Q7EZV3 Q7EZV3_ORYSJ P0456B03.109 Os08g0425200 OSNPB_080425200 ENOG411E3HB SDHAF2 Q9FI44,B9DGI7,A0A1P8BCI7,F4KBT8 SDAF2_ARATH,B9DGI7_ARATH,A0A1P8BCI7_ARATH,F4KBT8_ARATH Succinate dehydrogenase assembly factor 2, mitochondrial (SDH assembly factor 2),AT5G51040 protein (Succinate dehydrogenase assembly factor),Succinate dehydrogenase assembly factor DISRUPTION PHENOTYPE: Inhibition of primary root elongation and early lateral root emergence. {ECO:0000269|PubMed:23036115}. FUNCTION: Plays an essential role in the assembly of succinate dehydrogenase (SDH), an enzyme complex (also referred to as respiratory complex II) that is a component of both the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol (PubMed:23036115). Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit of the SDH catalytic dimer (PubMed:23036115, PubMed:23154507). {ECO:0000269|PubMed:23036115, ECO:0000269|PubMed:23154507}. 21276,20730,15874,22247 Succinate dehydrogenase assembly factor 2, mitochondrial (SDH assembly factor 2),AT5G51040 protein (Succinate dehydrogenase assembly factor),Succinate dehydrogenase assembly factor mitochondrion [GO:0005739]; mitochondrial electron transport, succinate to ubiquinone [GO:0006121]; mitochondrial respiratory chain complex II assembly [GO:0034553]; protein-FAD linkage [GO:0018293]; tricarboxylic acid cycle [GO:0006099],mitochondrion [GO:0005739]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; primary root development [GO:0080022] locus:2157418; AT5G51040 Flavinator of succinate dehydrogenase Os11g0528300 protein (TPR repeat region family protein, expressed) Q2R3B8 Q2R3B8_ORYSJ Os11g0528300 LOC_Os11g32480 Os11g0528300 OsJ_34096 OSNPB_110528300 ENOG411DT57 EXPB6,EXPB2,EXPB4 F4IBJ3,Q9SHY6,Q9SHD1 EXB6L_ARATH,EXPB2_ARATH,EXPB4_ARATH Expansin-B6 (At-EXPB6) (AtEXPB6) (Beta-expansin-6),Putative expansin-B2 (At-EXPB2) (AtEXPB2) (Ath-ExpBeta-1.4) (Beta-expansin-2),Expansin-B4 (At-EXPB4) (AtEXPB4) (Ath-ExpBeta-1.1) (Beta-expansin-4) FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. {ECO:0000305|PubMed:16356276}.,FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 24013,29127,27204 Expansin-B6 (At-EXPB6) (AtEXPB6) (Beta-expansin-6),Putative expansin-B2 (At-EXPB2) (AtEXPB2) (Ath-ExpBeta-1.4) (Beta-expansin-2),Expansin-B4 (At-EXPB4) (AtEXPB4) (Ath-ExpBeta-1.1) (Beta-expansin-4) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; sexual reproduction [GO:0019953],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall loosening [GO:0009828]; sexual reproduction [GO:0019953]; unidimensional cell growth [GO:0009826],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; cell wall organization [GO:0071555]; sexual reproduction [GO:0019953] locus:4515102723;,locus:2018521;,locus:2055594; AT1G65681,AT1G65680,AT2G45110 May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found Expansin-B15 (Beta-expansin-15) (OsEXPB15) (OsaEXPb1.16),Putative expansin-B14 (Beta-expansin-14) (OsEXPB14) (OsaEXPb1.18),Expansin-B18 (Beta-expansin-18) (OsEXPB18) (OsaEXPb1.15) Q7XT40,Q6H677,Q5W6Z9 EXB15_ORYSJ,EXB14_ORYSJ,EXB18_ORYSJ EXPB15 Os04g0552000 LOC_Os04g46630 OsJ_15706 OSJNBa0010H02.7,EXPB14 Os02g0658600 LOC_Os02g44106 OJ1112_F09.27 P0708H12.6,EXPB18 Os05g0246300 LOC_Os05g15690 OSJNBa0037H06.12 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DT56 AGL17,AGL21,AGL16 Q38840,Q9SZJ6,A2RVQ5,A0A1I9LNT5,A0A1P8B617,A0A1P8B622,A0A1P8B618 AGL17_ARATH,AGL21_ARATH,AGL16_ARATH,A0A1I9LNT5_ARATH,A0A1P8B617_ARATH,A0A1P8B622_ARATH,A0A1P8B618_ARATH Agamous-like MADS-box protein AGL17,Agamous-like MADS-box protein AGL21,Agamous-like MADS-box protein AGL16,AGAMOUS-like 16,AGAMOUS-like 21 Late flowering under long days.Average of 15-16 rosette leaves produced before flowering compared to average of 10 for normal siblings. Late flowering-H. Yu-2008 FUNCTION: Probable transcription factor.,FUNCTION: Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. 26314,26411,27428,23951,19694,19955,24742 Agamous-like MADS-box protein AGL17,Agamous-like MADS-box protein AGL21,Agamous-like MADS-box protein AGL16,AGAMOUS-like 16,AGAMOUS-like 21 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor binding [GO:0008134]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor binding [GO:0008134]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; stomatal lineage progression [GO:0010440]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}. TISSUE SPECIFICITY: Preferentially expressed in roots.,TISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}.,TISSUE SPECIFICITY: Expressed at high levels in leaves, moderate levels in roots, seedlings and stems, and at low levels in flowers, pollen and siliques. Accumulates in leaf guard cells and trichomes. Also present in epidermal cells of roots (PubMed:11115127, PubMed:12837945, PubMed:12949148). Expressed in mature guard cells (PubMed:17704216). {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:17704216}. locus:2066050;,locus:2121070;,locus:2082618; AT2G22630,AT4G37940,AT3G57230 Transcription factor MADS-box transcription factor 27 (OsMADS27) (RMADS218),MADS-box transcription factor 25 (OsMADS25),Os06g0347700 protein Q6EP49,Q84NC5,A0A0P0WWA7 MAD27_ORYSJ,MAD25_ORYSJ,A0A0P0WWA7_ORYSJ MADS27 Os02g0579600 LOC_Os02g36924 B1267B06.20,MADS25 Os04g0304400 LOC_Os04g23910 OSJNBa0079M09.14,Os06g0347700 OSNPB_060347700 FUNCTION: Probable transcription factor. ENOG411DT55 O48766 GUN11_ARATH Endoglucanase 11 (EC 3.2.1.4) (Endo-1,4-beta glucanase 11) ARA:AT2G32990-MONOMER; 3.2.1.4 59087 Endoglucanase 11 (EC 3.2.1.4) (Endo-1,4-beta glucanase 11) extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245] locus:2059375; AT2G32990 Endoglucanase Endoglucanase 22 (EC 3.2.1.4) (Endo-1,4-beta glucanase 22) (OsGLU11),Endoglucanase (EC 3.2.1.4) Q6H3Z9,A0A0P0XL88 GUN22_ORYSJ,A0A0P0XL88_ORYSJ GLU11 Os09g0394300 LOC_Os09g23084 B1339H09.3 OSJNOa018M17.6,Os09g0394300 OSNPB_090394300 ENOG411DT54 MYB3R5,MYB3R1,MYB3R3,MYB3R4,PC-MYB1,MYB3R-5,MYB3R-4,MYB3R-3 Q6R032,Q9S7G7,Q8H1P9,Q94FL9,Q29PZ8,Q9ZPU2,F4JV48,A0A1P8BDD0,F4JXW4,A0A1P8AXX4,A0A1I9LSC6,A0A1P8BAI6 MB3R5_ARATH,MB3R1_ARATH,MB3R3_ARATH,MB3R4_ARATH,Q29PZ8_ARATH,Q9ZPU2_ARATH,F4JV48_ARATH,A0A1P8BDD0_ARATH,F4JXW4_ARATH,A0A1P8AXX4_ARATH,A0A1I9LSC6_ARATH,A0A1P8BAI6_ARATH Transcription factor MYB3R-5 (Myb-related protein 3R-5),Transcription factor MYB3R-1 (Myb-related protein 3R-1) (Plant c-MYB-like protein 1) (Protein PC-MYB1),Transcription factor MYB3R-3 (Myb-related protein 3R-3),Transcription factor MYB3R-4 (Myb-related protein 3R-4) (Protein ENHANCED DEFECTIVE CYTOKINESIS),At2g13960 (Homeodomain-like superfamily protein),Homeodomain-like superfamily protein (MYB transcription factor) (Putative MYB family transcription factor),Homeodomain-like protein,Myb domain protein 3r-5,Myb domain protein 3r-4,Homeodomain-like superfamily protein,Myb domain protein 3r-3 DISRUPTION PHENOTYPE: In double mutant myb3r3 myb3r5 and triple mutant myb3r1 myb3r3 myb3r5, up-regulation of many G2/M-specific genes leading to larger seeds, organs and embryos due to overproliferation and ectopic cell divisions. {ECO:0000269|PubMed:26069325}.,DISRUPTION PHENOTYPE: The double mutant myb3r1 myb3r4 often fails to complete cytokinesis, resulting in multinucleate cells with gapped walls and cell wall stubs in diverse tissues (e.g. in embryo during the first or second division after fertilization, in stomata guard mother cell) and several pleiotropic developmental defects, and associated with the selective reduction of several G2/M phase-specific genes transcript levels (e.g. CYCB2, CDC20.1 and KNOLLE). Hypersensitivity to caffeine, an inhibitor of cytokinesis (PubMed:17287251, PubMed:21862669). In triple mutant myb3r1 myb3r3 myb3r5, up-regulation of many G2/M-specific genes leading to larger seeds, organs and embryos due to overproliferation and ectopic cell divisions (PubMed:26069325). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.,DISRUPTION PHENOTYPE: In EDC plants, defects of cytokinesis (PubMed:25806785). The double mutant myb3r1 myb3r4 often fails to complete cytokinesis, resulting in multinucleate cells with gapped walls and cell wall stubs in diverse tissues (e.g. in embryo during the first or second division after fertilization, in stomata guard mother cell) and several pleiotropic developmental defects, and associated with the selective reduction of several G2/M phase-specific genes transcript levels (e.g. CYCB2, CDC20.1 and KNOLLE). Hypersensitivity to caffeine, an inhibitor of cytokinesis (PubMed:17287251, PubMed:21862669). Impaired powdery mildew (e.g. G.orontii)-induced endoreduplication. Reduced G.orontii growth and reproduction leading to an enhanced resistance to powdery mildew (PubMed:20018666). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:20018666, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}. No visible phenotype.,Defective cytokinesis was found in embryo most frequently during the first or second division after fertilization: these embryos were rod- or club-shaped and contained multiple nuclei that were not separated by cell walls. FUNCTION: Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.,FUNCTION: Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.,FUNCTION: Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}. 61732,86506,56119,108236,17056,13665,110372,55424,90419,12388,57789,87516 Transcription factor MYB3R-5 (Myb-related protein 3R-5),Transcription factor MYB3R-1 (Myb-related protein 3R-1) (Plant c-MYB-like protein 1) (Protein PC-MYB1),Transcription factor MYB3R-3 (Myb-related protein 3R-3),Transcription factor MYB3R-4 (Myb-related protein 3R-4) (Protein ENHANCED DEFECTIVE CYTOKINESIS),At2g13960 (Homeodomain-like superfamily protein),Homeodomain-like superfamily protein (MYB transcription factor) (Putative MYB family transcription factor),Homeodomain-like protein,Myb domain protein 3r-5,Myb domain protein 3r-4,Homeodomain-like superfamily protein,Myb domain protein 3r-3 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; negative regulation of cell proliferation [GO:0008285]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to ethylene [GO:0009723]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; negative regulation of cell proliferation [GO:0008285]; negative regulation of cellular response to caffeine [GO:1901181]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cytokinesis [GO:0032465]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of cell proliferation [GO:0008285]; negative regulation of transcription, DNA-templated [GO:0045892]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription coactivator activity [GO:0003713]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; negative regulation of cellular response to caffeine [GO:1901181]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cytokinesis [GO:0032465]; regulation of DNA endoreduplication [GO:0032875]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to fungus [GO:0009620]; response to parasitic fungus [GO:0009623]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700],integral component of membrane [GO:0016021]; DNA binding [GO:0003677],DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.,DEVELOPMENTAL STAGE: Accumulates in the columella root cap. Also present in floral organs in young flower buds. Strongly expressed in vascular tissues of filaments and anthers. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed both in proliferating and maturing stages of leaves (PubMed:26069325). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}.,DEVELOPMENTAL STAGE: Expressed in the root quiescent center (PubMed:15937229). Accumulates in division zone of primary root tips and emerging lateral roots. Also present in floral organs in young flower buds. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed specifically in proliferating stage of leaves (PubMed:26069325). {ECO:0000269|PubMed:15937229, ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}. TISSUE SPECIFICITY: Expressed ubiquitously at low levels (PubMed:10743663). Expressed in roots, cotyledons, flowers and leaves, especially in vascular tissues (PubMed:17287251). {ECO:0000269|PubMed:10743663, ECO:0000269|PubMed:17287251}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons and leaves, especially in vascular tissues, and in flowers. {ECO:0000269|PubMed:17287251}. locus:2180157;,locus:2083599;,locus:2144216;,locus:2053453;,locus:2125712; AT5G02320,AT4G32730,AT3G09370,AT5G11510,AT2G13960 transcription factor Transcription factor MYB3R-2 (Myb-related protein MYB3R-2) (OsMYB3R-2),Os05g0459000 protein,Os01g0229000 protein (Fragment),Os12g0238000 protein Q0JHU7,Q0DHL1,A0A0P0V047,A0A0P0Y8F4 MB3R2_ORYSJ,Q0DHL1_ORYSJ,A0A0P0V047_ORYSJ,A0A0P0Y8F4_ORYSJ MYB3R-2 MYB15 Os01g0841500 LOC_Os01g62410 OsJ_04034 P0408C03.41,Os05g0459000 Os05g0459000 OSNPB_050459000,Os01g0229000 OSNPB_010229000,Os12g0238000 OSNPB_120238000 FUNCTION: Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. MISCELLANEOUS: Plants over-expressing MYB3R-2 show increased tolerance to freezing (PubMed:19279197). Plants over-expressing MYB3R-2 show retarded growth, increased tolerance to cold, drought and salt stresses, and have decreased sensitivity to seed germination inhibition by abscisic acid (ABA) or salt (PubMed:17293435). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. ENOG411DT53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cysteine synthase Cysteine synthase (Os06g0564500 protein) (cDNA clone:001-043-H12, full insert sequence),Os06g0149900 protein (Putative cysteine synthase) (cDNA clone:J023123O18, full insert sequence),Os06g0564700 protein (Putative cysteine synthase) (cDNA clone:J023050D23, full insert sequence),Cysteine synthase (Os06g0149700 protein),Os06g0564400 protein,Os06g0564600 protein Q5Z8Y9,Q5VND2,Q5Z6A9,Q5VND3,A0A0P0WXY8,A0A0P0WY15 Q5Z8Y9_ORYSJ,Q5VND2_ORYSJ,Q5Z6A9_ORYSJ,Q5VND3_ORYSJ,A0A0P0WXY8_ORYSJ,A0A0P0WY15_ORYSJ Os06g0564500 Os06g0564500 OsJ_21722 OSNPB_060564500 P0656E03.40,Os06g0149900 OsJ_20138 OSNPB_060149900 P0710H01.9,Os06g0564700 Os06g0564700 OSNPB_060564700 P0513E02.4 P0656E03.46,Os06g0149700 OsJ_20137 OSNPB_060149700 P0710H01.8,Os06g0564400 OSNPB_060564400,Os06g0564600 OSNPB_060564600 ENOG411DT52 PME6 O49298 PME6_ARATH Probable pectinesterase/pectinesterase inhibitor 6 [Includes: Pectinesterase inhibitor 6 (Pectin methylesterase inhibitor 6); Pectinesterase 6 (PE 6) (EC 3.1.1.11) (Pectin methylesterase 6) (AtPME6)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT1G23200-MONOMER; 3.1.1.11 61270 Probable pectinesterase/pectinesterase inhibitor 6 [Includes: Pectinesterase inhibitor 6 (Pectin methylesterase inhibitor 6); Pectinesterase 6 (PE 6) (EC 3.1.1.11) (Pectin methylesterase 6) (AtPME6)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Low expression in vegetative and flower stages. No expression in young siliques but highly expressed in older siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in rosette leaves, flower and siliques. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:9767082}. locus:2201230; AT1G23200 pectinesterase Os09g0545525 protein A0A0P0XPW3 A0A0P0XPW3_ORYSJ Os09g0545525 OSNPB_090545525 ENOG411DT51 T16L24.180 Q9M1A5,A0A1I9LRW3 Q9M1A5_ARATH,A0A1I9LRW3_ARATH AT3g59630/T16L24_180 (At3g59630) (Diphthamide synthesis DPH2 family protein) (Uncharacterized protein T16L24.180),Diphthamide synthesis DPH2 family protein FUNCTION: Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2. {ECO:0000256|RuleBase:RU364133}. PATHWAY: Protein modification; peptidyl-diphthamide biosynthesis. {ECO:0000256|SAAS:SAAS00738906}. 54843,47645 AT3g59630/T16L24_180 (At3g59630) (Diphthamide synthesis DPH2 family protein) (Uncharacterized protein T16L24.180),Diphthamide synthesis DPH2 family protein peptidyl-diphthamide biosynthetic process from peptidyl-histidine [GO:0017183] locus:2097513; AT3G59630 diphthamide biosynthesis protein Diphthamide biosynthesis protein 2 (Diphthamide biosynthesis protein 2 containing protein, expressed) (Os11g0265600 protein) Q53LS8 Q53LS8_ORYSJ Os11g0265600 LOC_Os11g16430 OsJ_33577 OSNPB_110265600 ENOG411DT50 Q9LW84 PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 72925 Pentatricopeptide repeat-containing protein At3g16010 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2093472; AT3G16010 Pentatricopeptide repeat-containing protein Os02g0266200 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J013064M09, full insert sequence) (cDNA clone:J033127A08, full insert sequence) Q6ETX2 Q6ETX2_ORYSJ Os02g0266200 OsJ_06176 OSNPB_020266200 P0006C08.32 ENOG411E3HH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0821200 protein,Os10g0563100 protein A0A0P0V9S6,A0A0P0XXV4 A0A0P0V9S6_ORYSJ,A0A0P0XXV4_ORYSJ Os01g0821200 OSNPB_010821200,Os10g0563100 OSNPB_100563100 ENOG411DT59 Q84WV7 Q84WV7_ARATH Adaptin ear-binding coat-associated protein 1 NECAP-1 (Uncharacterized protein At3g58600) 33918 Adaptin ear-binding coat-associated protein 1 NECAP-1 (Uncharacterized protein At3g58600) membrane [GO:0016020]; endocytosis [GO:0006897] locus:2076461; AT3G58600 adaptin ear-binding coat-associated protein Os01g0614700 protein,Os01g0614700 protein (cDNA clone:001-207-C03, full insert sequence) Q5ZDX6,Q5ZDX7 Q5ZDX6_ORYSJ,Q5ZDX7_ORYSJ P0410E01.39-2 Os01g0614700 OSNPB_010614700,P0410E01.39-1 Os01g0614700 OSNPB_010614700 ENOG411DT58 CRLK1 Q9FIU5 CRLK1_ARATH Calcium/calmodulin-regulated receptor-like kinase 1 (AtCRLK1) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased sensitivity to chilling and freezing temperatures, associated with a delayed induction of cold-responsive genes (PubMed:20026608, PubMed:20724845). Impaired MAP kinases activation in response to cold (PubMed:20724845). {ECO:0000269|PubMed:20026608, ECO:0000269|PubMed:20724845}. increased sensitivity to chilling and freezing temperature. Sensitive to freezing-B. Poovaiah-2010 FUNCTION: Required for cold tolerance, via the activation of MAP kinases activity (PubMed:20026608, PubMed:20724845). Phosphorylates and activates MEKK1 in response to cold in a calcium-dependent manner (PubMed:23857079). {ECO:0000269|PubMed:20026608, ECO:0000269|PubMed:20724845, ECO:0000269|PubMed:23857079}. 2.7.11.1 48970 Calcium/calmodulin-regulated receptor-like kinase 1 (AtCRLK1) (EC 2.7.11.1) endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; protein serine/threonine kinase activity [GO:0004674]; cold acclimation [GO:0009631]; response to cold [GO:0009409] TISSUE SPECIFICITY: Similar transcript expression levels in seedlings, roots, leaves, stems and flowers,and lower levels in siliques, but protein accumulates mostly in 7-day-old seedlings, old roots and young leaves and, to a lower extent, in young roots, old leaves, flowers and siliques (at protein level). {ECO:0000269|PubMed:20026608}. locus:2172149; AT5G54590 leucine-rich repeat receptor-like serine threonine-protein kinase Os08g0138700 protein (Putative serine/threonine-specific protein kinase) (cDNA, clone: J065045C12, full insert sequence) Q6ZKI6 Q6ZKI6_ORYSJ Os08g0138700 OJ1119_D01.12 OsJ_25984 OSNPB_080138700 ENOG411E3HJ Q9C584 Q9C584_ARATH At5g22040 (Ubiquitin carboxyl-terminal hydrolase) (Uncharacterized protein At5g22040) 32135 At5g22040 (Ubiquitin carboxyl-terminal hydrolase) (Uncharacterized protein At5g22040) hydrolase activity [GO:0016787] locus:504956463; AT5G22040 NA Os03g0274700 protein (Fragment) A0A0P0VW12 A0A0P0VW12_ORYSJ Os03g0274700 OSNPB_030274700 ENOG411E3HK A0A1P8B4G3,Q84JY3,A8MRG4 A0A1P8B4G3_ARATH,Q84JY3_ARATH,A8MRG4_ARATH Histone acetyltransferase,Histone acetyltransferase (Uncharacterized protein At4g32295) 18036,26998,19311 Histone acetyltransferase,Histone acetyltransferase (Uncharacterized protein At4g32295) transferase activity [GO:0016740] locus:504955556; AT4G32295 NA NA NA NA NA NA NA NA ENOG411DT5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potassium transporter Potassium transporter 1 (OsHAK1),Potassium transporter (Fragment) Q6VVA6,A0A0P0WA59 HAK1_ORYSJ,A0A0P0WA59_ORYSJ HAK1 Os04g0401700 LOC_Os04g32920 OsJ_14662 OSJNBb0012E08.7,Os04g0401700 OSNPB_040401700 FUNCTION: High-affinity potassium transporter. Also transport rubidium, with the same affinity and cesium, with a lower affinity. {ECO:0000269|PubMed:12376644}.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. ENOG411DT5V EBP1 Q96327 EBP1_ARATH ERBB-3 BINDING PROTEIN 1 (AtEBP1) (Proliferation-associated protein G2p) (AtG2) (Protein CELL-PROLIFERATION-RELATED) (AtCPR) DISRUPTION PHENOTYPE: Distorted reduced growth leading to small plants, and impaired fertility. At the seedling stage, a delay in leaf initiation and distorted leaf shape were characteristic of the silenced lines. {ECO:0000269|PubMed:17024182}. FUNCTION: Binds RNA. Associates with 28S, 18S and 5.8S mature rRNAs, several rRNA precursors and probably U3 small nucleolar RNA. May be involved in regulation of intermediate and late steps of rRNA processing. May be involved in ribosome assembly (By similarity). Required for expression of cell cycle genes such as CYCD3-1, RNR2A and CDKB1-1. Promotes, in a dose- and auxin-dependent manner, organ growth by stimulating both cell proliferation and expansion, via the regulation of RBR1 levels (PubMed:17024182). {ECO:0000250|UniProtKB:Q9UQ80, ECO:0000269|PubMed:17024182}. R-ATH-6798695; 42979 ERBB-3 BINDING PROTEIN 1 (AtEBP1) (Proliferation-associated protein G2p) (AtG2) (Protein CELL-PROLIFERATION-RELATED) (AtCPR) intracellular ribonucleoprotein complex [GO:0030529]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; RNA binding [GO:0003723]; auxin-activated signaling pathway [GO:0009734]; cell cycle G1/S phase transition [GO:0044843]; multicellular organism development [GO:0007275]; regulation of cell division [GO:0051302]; regulation of cell growth [GO:0001558]; response to cytokinin [GO:0009735]; rRNA processing [GO:0006364] DEVELOPMENTAL STAGE: Accumulates mostly in developing organs. During early stages of organ development, promotes cell proliferation, influences cell-size threshold for division and shortens the period of meristematic activity. In postmitotic cells, enhances cell expansion. {ECO:0000269|PubMed:17024182}. TISSUE SPECIFICITY: Strongly expressed in calls, roots and flowers, to a lower extent, in stems and siliques, but hardly detectable in leaves. {ECO:0000269|PubMed:15689342}. locus:2074373; AT3G51800 Proliferation-associated protein Os05g0350500 protein (Putative DNA-binding protein GBP16) (cDNA clone:001-037-G08, full insert sequence) (cDNA clone:J033112P14, full insert sequence) Q5W6H1 Q5W6H1_ORYSJ Os05g0350500 OSJNBa0077J17.8 OSNPB_050350500 ENOG411DT5U RPF1 Q9LPX2,P0C7Q7,A0A1P8ANP1,Q0IGJ6,A0A1P8ARL9 PPR39_ARATH,PPR38_ARATH,A0A1P8ANP1_ARATH,Q0IGJ6_ARATH,A0A1P8ARL9_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial,Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial,RNA processing FACTOR,At1g63230 (Tetratricopeptide repeat (TPR)-like superfamily protein),Pentatricopeptide (PPR) repeat protein 72325,67178,68990,36122,18015 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial,Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial,RNA processing FACTOR,At1g63230 (Tetratricopeptide repeat (TPR)-like superfamily protein),Pentatricopeptide (PPR) repeat protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:1009023134;,locus:2195103;,locus:2038451; AT1G12775,AT1G12700,AT1G63230 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DT5T SWI3D,SWI3C Q8VY05,Q9XI07 SWI3D_ARATH,SWI3C_ARATH SWI/SNF complex subunit SWI3D (AtSWI3D) (Transcription regulatory protein SWI3D),SWI/SNF complex subunit SWI3C (AtSWI3C) (Transcription regulatory protein SWI3C) DISRUPTION PHENOTYPE: Plants are viable but have alterations in leaf, root and flower development, and are early flowering. {ECO:0000269|PubMed:16055636}. Delayed developmentsemi-dwarf growth habit and formation of aberrant rosettes. The rosette and cauline leaves are severely twisted along the proximodistal axis leading to a downward curvature of the lateral edges toward the abaxial leaf surface. Cross sections of leaves showed an increased protrusion of mesophyll cell files around the vascular bundles. The root system is greatly reduced because elongation of primary roots is inhibited. Seedlings develop several side roots and secondary root branches. Semi-dwarf; Slow growth; Abnormal rosette growth; Downward-bending leaves; Very short roots; Decreased branching; Few cauline leaves; Abnormal floral morphology; Severely reduced fertility; Slightly early flowering-A. Jerzmanowski-2005 FUNCTION: Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.,FUNCTION: Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636}. 107797,88250 SWI/SNF complex subunit SWI3D (AtSWI3D) (Transcription regulatory protein SWI3D),SWI/SNF complex subunit SWI3C (AtSWI3C) (Transcription regulatory protein SWI3C) nucleus [GO:0005634]; DNA binding [GO:0003677]; zinc ion binding [GO:0008270]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],SWI/SNF complex [GO:0016514]; DNA binding [GO:0003677]; chromatin remodeling [GO:0006338]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:14682613}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:14682613}. locus:2116159;,locus:2036942; AT4G34430,AT1G21700 SWI SNF complex subunit Os11g0183700 protein (SWIRM domain containing protein, expressed) (cDNA clone:J013089J18, full insert sequence),Os11g0183700 protein (Fragment),Os12g0176700 protein (Fragment) Q53KK6,A0A0P0XZQ9,A0A0P0Y7F6 Q53KK6_ORYSJ,A0A0P0XZQ9_ORYSJ,A0A0P0Y7F6_ORYSJ LOC_Os11g08080 Os11g0183700 OSNPB_110183700,Os11g0183700 OSNPB_110183700,Os12g0176700 OSNPB_120176700 ENOG411DT5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family OSJNBa0084A10.13 protein (Os04g0432100 protein) Q7XQP2 Q7XQP2_ORYSJ OSJNBa0084A10.13 Os04g0432100 OSNPB_040432100 ENOG411DT5R PAT22 Q9C533 ZDHC1_ARATH Probable protein S-acyltransferase 22 (EC 2.3.1.225) (Probable palmitoyltransferase At1g69420) (Zinc finger DHHC domain-containing protein At1g69420) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.4}. 2.3.1.225; 2.3.1.225 65890 Probable protein S-acyltransferase 22 (EC 2.3.1.225) (Probable palmitoyltransferase At1g69420) (Zinc finger DHHC domain-containing protein At1g69420) cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] DEVELOPMENTAL STAGE: Highly expressed during bolting. {ECO:0000269|PubMed:22968831}. locus:2007086; AT1G69420 S-acyltransferase At1g69420-like S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) C7J4J0 C7J4J0_ORYSJ Os07g0596000 Os07g0596000 OSNPB_070596000 ENOG411DT5Q Q94CC0,Q9STW1 Y5994_ARATH,Q9STW1_ARATH Uncharacterized protein At5g49945,At4g24330 (Uncharacterized protein AT4g24330) (Uncharacterized protein T22A6.160) 54592,53947 Uncharacterized protein At5g49945,At4g24330 (Uncharacterized protein AT4g24330) (Uncharacterized protein T22A6.160) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; calcium ion binding [GO:0005509] locus:505006684;,locus:2135987; AT5G49945,AT4G24330 Protein of unknown function (DUF1682) Os05g0432400 protein (cDNA clone:J023004C23, full insert sequence) (cDNA clone:J023011H02, full insert sequence),Os05g0432400 protein Q6I5U8,A0A0P0WMY1 Q6I5U8_ORYSJ,A0A0P0WMY1_ORYSJ Os05g0432400 OJ1301_G07.5 OJ1378_A04.10 OSNPB_050432400,Os05g0432400 OSNPB_050432400 ENOG411DT5P Q8GYT4 Q8GYT4_ARATH RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At1g11020) (Uncharacterized protein At1g11020/T19D16_25) 35987 RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At1g11020) (Uncharacterized protein At1g11020/T19D16_25) integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2197434; AT1G11020 zinc finger NA NA NA NA NA NA NA ENOG411DT5Z RXW8 Q94A87,F4IBD7,A0A1P8ATL6 CSCL9_ARATH,CSCLA_ARATH,A0A1P8ATL6_ARATH CSC1-like protein At1g10090,CSC1-like protein RXW8,GDSL-like lipase/acylhydrolase superfamily protein FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. 86768,84848,71488 CSC1-like protein At1g10090,CSC1-like protein RXW8,GDSL-like lipase/acylhydrolase superfamily protein integral component of membrane [GO:0016021]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2201876; AT1G10090,AT1G58520 early-responsive to dehydration Early-responsive to dehydration protein, putative, expressed (Os12g0633600 protein) (cDNA clone:J033131J04, full insert sequence),Os03g0673800 protein (Fragment),Os03g0673800 protein Q2QLP9,A0A0N7KHT4,A0A0P0W1Y5 Q2QLP9_ORYSJ,A0A0N7KHT4_ORYSJ,A0A0P0W1Y5_ORYSJ LOC_Os12g43720 Os12g0633600 OsJ_20480 OSNPB_120633600,Os03g0673800 OSNPB_030673800 ENOG411DT5Y MJC20.7 F4K000 F4K000_ARATH Metal-dependent protein hydrolase 42299 Metal-dependent protein hydrolase cytosol [GO:0005829]; mitochondrion [GO:0005739]; hydrolase activity [GO:0016787] locus:2165760; AT5G41970 UPF0160 protein MYG1 Os02g0686600 protein (Putative GAMM1 protein) Q6ZHC0 Q6ZHC0_ORYSJ Os02g0686600 OJ1717_A09.37 OsJ_07968 OSNPB_020686600 ENOG411DT5X Q84JV6 Q84JV6_ARATH Radical SAM superfamily protein (Uncharacterized protein At3g19630) ARA:GQT-581-MONOMER; 41179 Radical SAM superfamily protein (Uncharacterized protein At3g19630) cytoplasm [GO:0005737]; iron-sulfur cluster binding [GO:0051536]; rRNA methyltransferase activity [GO:0008649]; tRNA methyltransferase activity [GO:0008175]; rRNA base methylation [GO:0070475] locus:2091161; AT3G19630 Ribosomal RNA large subunit methyltransferase Os03g0202300 protein (Radical SAM enzyme, Cfr family protein, expressed) Q10QB5 Q10QB5_ORYSJ LOC_Os03g10520 Os03g0202300 OSNPB_030202300 ENOG411DT5G A0A1P8AX98,F4IVJ8 A0A1P8AX98_ARATH,F4IVJ8_ARATH ARM repeat superfamily protein 199704,201212 ARM repeat superfamily protein protein complex scaffold activity [GO:0032947]; proteasome assembly [GO:0043248],membrane [GO:0016020]; protein complex scaffold activity [GO:0032947]; proteasome assembly [GO:0043248] locus:2039483; AT2G26780 Proteasome-associated protein ECM29 homolog Os11g0137300 protein (Fragment),Os12g0134200 protein (Fragment),Os12g0148400 protein (Fragment),Os11g0137300 protein Q0IUS4,Q0IQA2,A0A0P0Y714,A0A0P0XZ26 Q0IUS4_ORYSJ,Q0IQA2_ORYSJ,A0A0P0Y714_ORYSJ,A0A0P0XZ26_ORYSJ Os11g0137300 OSNPB_110137300,Os12g0134200 Os12g0134200 OSNPB_120134200,Os12g0148400 OSNPB_120148400 ENOG411DT5F B3GALT14,B3GALT13,B3GALT12 Q8L7M1,Q9LKA9,Q66GS2,A0A1P8B0L1 B3GTE_ARATH,B3GTD_ARATH,B3GTC_ARATH,A0A1P8B0L1_ARATH Probable beta-1,3-galactosyltransferase 14 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 13 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 12 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) FUNCTION: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.- 38777,38722,41217,39777 Probable beta-1,3-galactosyltransferase 14 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 13 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 12 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486] locus:2009665;,locus:2086370;,locus:2057442; AT1G53290,AT3G14960,AT2G26100 Beta-13-galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q60E38,Q5VMA2 Q60E38_ORYSJ,Q5VMA2_ORYSJ Os05g0199500 Os05g0199500 OsJ_17464 OSJNBa0007C23.15 OSJNBa0017O06.7 OSNPB_050199500,KMK0024M20.12 Os06g0156900 OsJ_20186 OSNPB_060156900 P0046E09.18 ENOG411DT5E A0A1I9LS22,F4J262 A0A1I9LS22_ARATH,F4J262_ARATH N-acetylglucosaminyl transferase component family protein / Gpi1 family protein R-ATH-162710; 57246,63246 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein integral component of membrane [GO:0016021]; phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]; GPI anchor biosynthetic process [GO:0006506],glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex [GO:0000506]; integral component of membrane [GO:0016021]; phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]; GPI anchor biosynthetic process [GO:0006506] locus:2080655; AT3G57170 N-acetylglucosaminyl transferase component (Gpi1) Os05g0290300 protein A0A0P0WK37 A0A0P0WK37_ORYSJ Os05g0290300 OSNPB_050290300 ENOG411DT5D B3H4P1 PP450_ARATH Pentatricopeptide repeat-containing protein At5g66631 76174 Pentatricopeptide repeat-containing protein At5g66631 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:4515103769; AT5G66631 Pentatricopeptide repeat-containing protein Os01g0167750 protein Q5VQG1 Q5VQG1_ORYSJ Os01g0167750 Os01g0167750 OJ1276_B06.9 OSNPB_010167750 P0701D05.37 ENOG411DT5C Q9M9T2,F4HUI7 Q9M9T2_ARATH,F4HUI7_ARATH ARM repeat superfamily protein (At1g14300) (F14L17.6 protein),ARM repeat superfamily protein 37686,41931 ARM repeat superfamily protein (At1g14300) (F14L17.6 protein),ARM repeat superfamily protein locus:2012527; AT1G14300 Domain of unknown function (DUF383) Expressed protein (Os10g0406800 protein) Q338F8 Q338F8_ORYSJ LOC_Os10g26660 Os10g0406800 OSNPB_100406800 ENOG411DT5B SMG7 A9QM73,A0A1P8BBV1 SMG7_ARATH,A0A1P8BBV1_ARATH Protein SMG7 (SMG7 homolog),Telomerase activating protein Est1 DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:18544632}. Null: No homozygous mutant plants recovered; Knockdown 1: Seedling lethal; Dwarf; Decreased leaf number; Knockdown 2: Slow growth; Abnormal rosette leaf morphology; High penetrance of rosette lethality; Large SAM-K. Riha-2008 FUNCTION: Plays multiple roles in growth and development. Involved in nonsense-mediated mRNA decay (NMD). May provide a link to the mRNA degradation machinery to initiate NMD and serve as an adapter for UPF proteins function. Required for meiotic progression through anaphase II of pollen mother cells. May counteract cyclin-dependent kinase (CDK) activity at the end of meiosis. May play a role in plant defense through its involvement in NMD. {ECO:0000269|PubMed:18544632, ECO:0000269|PubMed:21119056, ECO:0000269|PubMed:22379136, ECO:0000269|PubMed:22974464}. R-ATH-975957; 117006,113644 Protein SMG7 (SMG7 homolog),Telomerase activating protein Est1 nucleus [GO:0005634]; P-body [GO:0000932]; telomerase holoenzyme complex [GO:0005697]; ribonuclease activity [GO:0004540]; ribonucleoprotein complex binding [GO:0043021]; telomerase RNA binding [GO:0070034]; telomeric DNA binding [GO:0042162]; defense response [GO:0006952]; mRNA export from nucleus [GO:0006406]; multicellular organism development [GO:0007275]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; regulation of growth [GO:0040008]; regulation of RNA stability [GO:0043487]; spindle assembly involved in meiosis [GO:0090306]; telomere maintenance via telomerase [GO:0007004] TISSUE SPECIFICITY: Expressed in flowers and at lower levels in stems and leaves. {ECO:0000269|PubMed:18544632}. locus:2150280; AT5G19400 Telomerase activating protein Est1 Os08g0305300 protein (cDNA clone:J023087H17, full insert sequence),Os08g0305300 protein (Fragment) Q0J6K0,A0A0N7KPM4 Q0J6K0_ORYSJ,A0A0N7KPM4_ORYSJ Os08g0305300 Os08g0305300 OSNPB_080305300,Os08g0305300 OSNPB_080305300 ENOG411DT5A P0C8Q6 PP368_ARATH Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial 94071 Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2150783; AT5G08310 pentatricopeptide repeat-containing protein At5g08310 NA NA NA NA NA NA NA ENOG411DT5N BBX25,BBX24,STO Q9SID1,Q96288,F4IBY7 BBX25_ARATH,BBX24_ARATH,F4IBY7_ARATH B-box zinc finger protein 25 (Protein SALT TOLERANCE HOMOLOG 1) (Salt tolerance-like protein),B-box zinc finger protein 24 (Salt tolerance protein),B-box zinc finger family protein DISRUPTION PHENOTYPE: Reduced length of hypocotyls. {ECO:0000269|PubMed:23624715}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings show reduction of hypocotyls length when grown under continous blue light and a short primary root phenotype under UV-B radiation. {ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:22410790}. Under FRc conditions the length mutant hypocotyls is decreased compared to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is similar to that of wild type.,shorter hypocotyl under Rc FRc Bc and larger cotyledon area than wt/increased anthocyanin accumulation under FRc and Bc. Short hypocotyl in red and far-red light-P. Quail-2006,Short hypocotyl-M. Rodriguez-Franco-2007 FUNCTION: Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.,FUNCTION: Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. MISCELLANEOUS: BBX24/STO expression is not changed in plants treated with increasing salt concentrations. {ECO:0000269|PubMed:12909688}. 26657,27641,19718 B-box zinc finger protein 25 (Protein SALT TOLERANCE HOMOLOG 1) (Salt tolerance-like protein),B-box zinc finger protein 24 (Salt tolerance protein),B-box zinc finger family protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; zinc ion binding [GO:0008270]; negative regulation of photomorphogenesis [GO:0010100]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription cofactor activity [GO:0003712]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; photoperiodism, flowering [GO:0048573]; regulation of transcription, DNA-templated [GO:0006355]; response to karrikin [GO:0080167]; response to light stimulus [GO:0009416]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],intracellular [GO:0005622]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. locus:2061330;,locus:2198841; AT2G31380,AT1G06040 salt tolerance ORPHAN transcription factor (Os02g0606200 protein) (Zinc finger protein) (cDNA clone:001-007-G06, full insert sequence) (cDNA clone:006-205-E01, full insert sequence),Os04g0493000 protein (Fragment) O82115,A0A0P0WC73 O82115_ORYSJ,A0A0P0WC73_ORYSJ Os02g0606200 OJ1058_F07.25 OSJNBa0030C08.1 OSNPB_020606200,Os04g0493000 OSNPB_040493000 ENOG411DT5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os07g0162600 protein (Putative pepper esterase) (cDNA clone:001-202-H03, full insert sequence) (cDNA clone:002-100-G12, full insert sequence) Q8GRZ3 Q8GRZ3_ORYSJ OJ1714_H10.153 P0428D12.106 Os07g0162600 OSNPB_070162600 ENOG411DT5K GPL2 P0DKL0,Q8GYK7 STKLT_ARATH,Y5285_ARATH GLABROUS1 enhancer-binding protein-like 2 (Protein GPL2) (Storekeeper-like protein At5g14280),TLC domain-containing protein At5g14285 FUNCTION: Probable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. 33721,28600 GLABROUS1 enhancer-binding protein-like 2 (Protein GPL2) (Storekeeper-like protein At5g14280),TLC domain-containing protein At5g14285 nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and in the septun of siliques, but not in roots. {ECO:0000269|PubMed:18162594}. AT5G14280,AT5G14285 TLC Os05g0302600 protein (cDNA clone:006-210-B06, full insert sequence) Q0DJC1 Q0DJC1_ORYSJ Os05g0302600 Os05g0302600 OSNPB_050302600 ENOG411DT5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA subtilisin-like OSJNBa0065O17.13 protein (Os04g0559000 protein),Os10g0568500 protein Q7XPR8,A0A0P0XXE6 Q7XPR8_ORYSJ,A0A0P0XXE6_ORYSJ Os04g0559000 OsJ_15755 OSJNBa0065O17.13 OSNPB_040559000,Os10g0568500 OSNPB_100568500 ENOG411DT5I Q8GUI4,F4HX19 UGPI6_ARATH,F4HX19_ARATH Uncharacterized GPI-anchored protein At1g61900,Uncharacterized protein 47028,46630 Uncharacterized GPI-anchored protein At1g61900,Uncharacterized protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2036788; AT1G61900 NA Os07g0102300 protein (cDNA clone:J033071E12, full insert sequence) Q0D977 Q0D977_ORYSJ Os07g0102300 Os07g0102300 OSNPB_070102300 ENOG411DT5H Q9SFV9 PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290, mitochondrial 98059 Pentatricopeptide repeat-containing protein At3g07290, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2098495; AT3G07290 repeat-containing protein NA NA NA NA NA NA NA ENOG411DYH1 PI P48007,A0A1P8BAQ7 PIST_ARATH,A0A1P8BAQ7_ARATH Floral homeotic protein PISTILLATA (Transcription factor PI),K-box region and MADS-box transcription factor family protein Homeotic floral transformations-E. Meyerowitz-1994 FUNCTION: Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms a heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP. {ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9489703}. MISCELLANEOUS: Mutations in PI cause transformation of petals into sepals and stamina into carpels. 24047,17247 Floral homeotic protein PISTILLATA (Transcription factor PI),K-box region and MADS-box transcription factor family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; specification of floral organ identity [GO:0010093]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2149264; AT5G20240 MADS-box transcription factor NA NA NA NA NA NA NA ENOG411DYH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411DYH3 MDC12.23 Q9STM4,Q3ECU8,Q5RJC5,F4K9A6 C3H43_ARATH,C3H13_ARATH,C3H67_ARATH,F4K9A6_ARATH Zinc finger CCCH domain-containing protein 43 (AtC3H43) (Zinc finger CCCH domain-containing protein ZFN-like 6),Zinc finger CCCH domain-containing protein 13 (AtC3H13),Zinc finger CCCH domain-containing protein 67 (AtC3H67) (Zinc finger CCCH domain-containing protein ZFN-like 5),Zinc finger C-x8-C-x5-C-x3-H type family protein 49864,9451,48607,50504 Zinc finger CCCH domain-containing protein 43 (AtC3H43) (Zinc finger CCCH domain-containing protein ZFN-like 6),Zinc finger CCCH domain-containing protein 13 (AtC3H13),Zinc finger CCCH domain-containing protein 67 (AtC3H67) (Zinc finger CCCH domain-containing protein ZFN-like 5),Zinc finger C-x8-C-x5-C-x3-H type family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872],DNA binding [GO:0003677]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; mRNA binding [GO:0003729] locus:2101170;,locus:1006230718;,locus:2161987; AT3G48440,AT1G48195,AT5G63260 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411DYH2 O22780,F4I5Q2,A0A1P8APB4,A0A1P8B207,A0A1P8B1Z9 FBT9_ARATH,FBT8_ARATH,A0A1P8APB4_ARATH,A0A1P8B207_ARATH,A0A1P8B1Z9_ARATH Probable folate-biopterin transporter 9, chloroplastic,Probable folate-biopterin transporter 8, chloroplastic,Major facilitator superfamily protein FUNCTION: Could mediate folate transport. {ECO:0000250}. 59023,59507,42838,46825,38947 Probable folate-biopterin transporter 9, chloroplastic,Probable folate-biopterin transporter 8, chloroplastic,Major facilitator superfamily protein chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; transport [GO:0006810],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2051078;,locus:2197803; AT2G33280,AT1G04570 integral membrane transporter family protein Os07g0425000 protein (Fragment) Q0D6X1 Q0D6X1_ORYSJ Os07g0425000 Os07g0425000 OSNPB_070425000 ENOG411DYH5 A0A1I9LQ09,A0A1I9LQ10,F4JCM7,F4IUN0,F4JCM5,F4JCM6 A0A1I9LQ09_ARATH,A0A1I9LQ10_ARATH,F4JCM7_ARATH,F4IUN0_ARATH,F4JCM5_ARATH,F4JCM6_ARATH Transducin family protein / WD-40 repeat family protein 143984,134184,150877,136900,146898,148601 Transducin family protein / WD-40 repeat family protein locus:2102207;,locus:2066231; AT3G33530,AT2G26610 Transducin family protein WD-40 repeat family Os02g0137000 protein (Fragment),Os02g0136933 protein Q0E448,A0A0N7KEN0 Q0E448_ORYSJ,A0A0N7KEN0_ORYSJ Os02g0137000 Os02g0137000 OSNPB_020137000,Os02g0136933 OSNPB_020136933 ENOG411DYH4 ANN5 Q9C9X3,A0A1P8ANK4 ANXD5_ARATH,A0A1P8ANK4_ARATH Annexin D5 (AnnAt5),Annexin 5 R-ATH-114608;R-ATH-6798695; 35993,28494 Annexin D5 (AnnAt5),Annexin 5 actin filament binding [GO:0051015]; calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; phospholipid binding [GO:0005543]; pollen development [GO:0009555]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to red or far red light [GO:0009639]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544] TISSUE SPECIFICITY: Expressed mainly in roots and flowers. Lower in stems and leaves. {ECO:0000269|PubMed:11457958}. locus:2200281; AT1G68090 annexin D5-like Annexin Q84Q48,Q6H450 Q84Q48_ORYSJ,Q6H450_ORYSJ P0456B03.120 Os08g0425700 OSNPB_080425700,Os09g0394900 B1040D06.12 B1339H09.19 OsJ_29255 OSNPB_090394900 ENOG411DYH7 TIP1-1 P25818 TIP11_ARATH Aquaporin TIP1-1 (Aquaporin TIP) (Gamma-tonoplast intrinsic protein) (Gamma-TIP) (Tonoplast intrinsic protein 1-1) (AtTIP1;1) (Tonoplast intrinsic protein, root-specific RB7) DISRUPTION PHENOTYPE: Plants display lesion formation or plant death, and low contents of glucose, fructose, inositol, and threonic, succinic, fumaric, and malic acids. {ECO:0000269|PubMed:15584951}. Null: Seedling lethal; Knockdown: Dwarf; Early senescence-H. Bohnert-2004 FUNCTION: Water channel required to facilitate the transport of water, diffusion of amino acids and/or peptides from the vacuolar compartment to the cytoplasm. Does not promote glycerol permeability. May play a role in the control of cell turgor and cell expansion. Its function is impaired by Hg(2+). May be involved in a vesicle-based metabolite routing through or between pre-vacuolar compartments and the central vacuole. Transports urea in yeast cells in a pH-independent manner. Transports H(2)O(2) in yeast cells. {ECO:0000269|PubMed:14576283, ECO:0000269|PubMed:15584951, ECO:0000269|PubMed:17105724, ECO:0000269|PubMed:8508761}. R-ATH-432047; 25620 Aquaporin TIP1-1 (Aquaporin TIP) (Gamma-tonoplast intrinsic protein) (Gamma-TIP) (Tonoplast intrinsic protein 1-1) (AtTIP1;1) (Tonoplast intrinsic protein, root-specific RB7) central vacuole [GO:0042807]; chloroplast envelope [GO:0009941]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; protein storage vacuole [GO:0000326]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; urea transmembrane transporter activity [GO:0015204]; water channel activity [GO:0015250]; hydrogen peroxide transmembrane transport [GO:0080170]; ion transmembrane transport [GO:0034220]; urea transport [GO:0015840]; water transport [GO:0006833] TISSUE SPECIFICITY: In all the vegetative organs, but not in seeds. Preferentially expressed in roots. {ECO:0000269|PubMed:8624437}. locus:2057906; AT2G36830 Aquaporin Probable aquaporin TIP1-1 (Tonoplast intrinsic protein 1-1) (OsTIP1;1) (rTIP1),Os03g0146100 protein (Fragment) P50156,A0A0P0VSY1 TIP11_ORYSJ,A0A0P0VSY1_ORYSJ TIP1-1 YK333 Os03g0146100 LOC_Os03g05290 OsJ_009057 OSJNBa0067N01.16,Os03g0146100 OSNPB_030146100 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DYH6 RUS4 Q67YT8 RUS4_ARATH Protein root UVB sensitive 4 58620 Protein root UVB sensitive 4 integral component of membrane [GO:0016021] locus:2046753; AT2G23470 Vitamin B6 photo-protection and homoeostasis NA NA NA NA NA NA NA ENOG411DYH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA START domain NA NA NA NA NA NA NA ENOG411DYH8 ALDH22A1 Q0WSF1,F4JC27 AL221_ARATH,F4JC27_ARATH Aldehyde dehydrogenase 22A1 (EC 1.2.1.3) (Novel aldehyde dehydrogenase family 22 member A1),Aldehyde dehydrogenase ARA:AT3G66658-MONOMER; 1.2.1.3 66003,61019 Aldehyde dehydrogenase 22A1 (EC 1.2.1.3) (Novel aldehyde dehydrogenase family 22 member A1),Aldehyde dehydrogenase endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; aldehyde dehydrogenase (NAD) activity [GO:0004029],aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; cellular aldehyde metabolic process [GO:0006081] TISSUE SPECIFICITY: Constituively expressed at low levels. {ECO:0000269|PubMed:15830124}. locus:2103425; AT3G66658 Aldehyde dehydrogenase Betaine aldehyde dehydrogenase-like (Os07g0688800 protein),Os07g0689150 protein Q8H5F0,A0A0P0XAG0 Q8H5F0_ORYSJ,A0A0P0XAG0_ORYSJ OJ1165_F02.119 P0597G07.102 Os07g0688800 OSNPB_070688800,Os07g0689150 OSNPB_070689150 ENOG411DYHQ GT6,GT7 Q9SZG1,O81007,Q9SVF4 GT6_ARATH,GT7_ARATH,Q9SVF4_ARATH Glycosyltransferase 6 (AtGT6) (EC 2.4.-.-),Putative glycosyltransferase 7 (AtGT7) (EC 2.4.-.-),At4g38310 (Galactosyl transferase GMA12/MNN10 family protein) (Glycosyltransferase) (Uncharacterized protein AT4g38310) (Uncharacterized protein F22I13.80) FUNCTION: Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q9CA75}. ARA:AT4G37690-MONOMER;,ARA:AT2G22900-MONOMER;,ARA:AT4G38310-MONOMER; 2.4.-.- 50295,52075,13903 Glycosyltransferase 6 (AtGT6) (EC 2.4.-.-),Putative glycosyltransferase 7 (AtGT7) (EC 2.4.-.-),At4g38310 (Galactosyl transferase GMA12/MNN10 family protein) (Glycosyltransferase) (Uncharacterized protein AT4g38310) (Uncharacterized protein F22I13.80) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; galactosyltransferase activity [GO:0008378]; galactoglucomannan metabolic process [GO:0010392]; galactomannan biosynthetic process [GO:0051070]; mucilage biosynthetic process [GO:0010192],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; galactosyltransferase activity [GO:0008378]; galactoglucomannan metabolic process [GO:0010392]; galactomannan biosynthetic process [GO:0051070]; mucilage biosynthetic process [GO:0010192]; seed coat development [GO:0010214],endosome [GO:0005768]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; galactosyltransferase activity [GO:0008378]; galactoglucomannan metabolic process [GO:0010392]; galactomannan biosynthetic process [GO:0051070]; mucilage biosynthetic process [GO:0010192] locus:2120145;,locus:2059155;,locus:2121798; AT4G37690,AT2G22900,AT4G38310 Galactosyl transferase GMA12 MNN10 family protein Probable glycosyltransferase 7 (OsGT7) (EC 2.4.-.-),Probable glycosyltransferase 6 (OsGT6) (EC 2.4.-.-) Q6Z5M3,Q2R2W8 GT7_ORYSJ,GT6_ORYSJ GT7 Os02g0723200 LOC_Os02g49140 P0685G12.14,GT6 Os11g0546500 LOC_Os11g34390 FUNCTION: Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q10MQ0}. ENOG411DYHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF862 Os06g0107000 protein (Fragment) A0A0P0WS35 A0A0P0WS35_ORYSJ Os06g0107000 OSNPB_060107000 ENOG411DYHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os08g0174100 protein A0A0P0XCH6 A0A0P0XCH6_ORYSJ Os08g0174100 OSNPB_080174100 ENOG411DYHR Q8VY14,Q9ZVT0,A0A1P8AT82,A0A1P8AT68,F4JHW4 Q8VY14_ARATH,Q9ZVT0_ARATH,A0A1P8AT82_ARATH,A0A1P8AT68_ARATH,F4JHW4_ARATH ELKS/Rab6-interacting/CAST family protein (Uncharacterized protein At4g02880),ELKS/Rab6-interacting/CAST family protein (F15K9.11 protein),ELKS/Rab6-interacting/CAST family protein 60378,63327,57611,60177,60791 ELKS/Rab6-interacting/CAST family protein (Uncharacterized protein At4g02880),ELKS/Rab6-interacting/CAST family protein (F15K9.11 protein),ELKS/Rab6-interacting/CAST family protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366] locus:2014540;,locus:2140190; AT4G02880,AT1G03290 NA Os10g0315400 protein A0A0P0XTG5 A0A0P0XTG5_ORYSJ Os10g0315400 OSNPB_100315400 ENOG411DYHU F4KHR9 F4KHR9_ARATH Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) 56686 Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2153281; AT5G59070 glycosyl transferase family 1 protein NA NA NA NA NA NA NA ENOG411DYHT Q9LK83,F4K1M6 Q9LK83_ARATH,F4K1M6_ARATH Portal protein 131660,128405 Portal protein integral component of membrane [GO:0016021] locus:2156268; AT5G48310 NA Os02g0198400 protein A0A0P0VG47 A0A0P0VG47_ORYSJ Os02g0198400 OSNPB_020198400 ENOG411DYHW SYCO,SYCO ARATH F4IPY2,F4IQQ3 SYCM_ARATH,F4IQQ3_ARATH Cysteine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS),Cysteinyl-tRNA synthetase, class Ia family protein DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:21135240}. Embryo defective; Male gametophyte defective; Abnormal female gametophyte morphology-R. Gross-Hardt-2010 FUNCTION: Required for female gametophyte development. Is necessary for the fusion of central cell nuclei and programmed cell death (PCD) of the antipodals. {ECO:0000269|PubMed:21135240}. 6.1.1.16 63914,45288 Cysteine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS),Cysteinyl-tRNA synthetase, class Ia family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cysteine-tRNA ligase activity [GO:0004817]; metal ion binding [GO:0046872]; cristae formation [GO:0042407]; cysteinyl-tRNA aminoacylation [GO:0006423]; polar nucleus fusion [GO:0010197]; regulation of programmed cell death [GO:0043067],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; cysteine-tRNA ligase activity [GO:0004817]; cysteinyl-tRNA aminoacylation [GO:0006423] locus:2042521; AT2G31170 Cysteinyl-tRNA Cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) Q0IZQ2 CPS11_ORYSJ Os09g0556500 LOC_Os09g38420 OsJ_30298 FUNCTION: Nuclear genome-encoded factor required for normal assembly of chloroplast polysomes. {ECO:0000250|UniProtKB:A0A1D6LAG9}. ENOG411DYHV ELF5 F4K7R6 F4K7R6_ARATH Proline-rich family protein 58008 Proline-rich family protein nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; mRNA cis splicing, via spliceosome [GO:0045292]; photoperiodism, flowering [GO:0048573] locus:2172229; AT5G62640 Inherit from KOG: WW domain binding protein 11 Os07g0192900 protein A0A0P0X3N8 A0A0P0X3N8_ORYSJ Os07g0192900 OSNPB_070192900 ENOG411DYHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aspartic proteinase Os02g0314600 protein (Putative chloroplast nucleoid DNA binding protein) (cDNA clone:J013170E21, full insert sequence) Q6Z6Q8 Q6Z6Q8_ORYSJ Os02g0314600 Os02g0314600 OsJ_06441 OSNPB_020314600 P0705A04.34 ENOG411DYHX Q9SUD5 WTR36_ARATH WAT1-related protein At4g28040 39348 WAT1-related protein At4g28040 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2132982; AT4G28040 EamA-like transporter family NA NA NA NA NA NA NA ENOG411DYHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin_1 Cupincin (EC 3.4.-.-) (52 kDa globulin-like protein) (allergen Ory s NRA),Os11g0549660 protein Q852L2,Q2R2S9 CUCIN_ORYSJ,Q2R2S9_ORYSJ Os03g0793700 LOC_Os03g57960 OSJNBb0060J21.10,Os11g0549660 LOC_Os11g34780 OSNPB_110549660 FUNCTION: Seed storage protein (Probable). Globulin-like protein that acts as zinc metalloprotease. Cleaves specifically between Leu-15 and Tyr-16 of insulin B chain, and Gln-1 and Leu-2 of neurotensin (NT) peptide in vitro. May play a role as an initiating endopeptidase in germinating seeds (By similarity). {ECO:0000250|UniProtKB:B8AL97, ECO:0000305}. ENOG411DYHA Q8GUH5,F4JVX7 Q8GUH5_ARATH,F4JVX7_ARATH AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (At4g33080) (Uncharacterized protein At4g33080),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein 60431,59056 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (At4g33080) (Uncharacterized protein At4g33080),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein intracellular [GO:0005622]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2125894; AT4G33080 serine threonine-protein kinase Non-specific serine/threonine protein kinase (EC 2.7.11.1) Q5SNF8 Q5SNF8_ORYSJ Os01g0186700 OSNPB_010186700 P0695A04.6 ENOG411DYHC CCT3 Q84WV1 TCPG_ARATH T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (Chaperonin CCT3) DISRUPTION PHENOTYPE: Embryonic lethal. {ECO:0000269|PubMed:21868675}. FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. {ECO:0000305}. R-ATH-390471;R-ATH-6814122; 60339 T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (Chaperonin CCT3) chaperonin-containing T-complex [GO:0005832]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077] locus:2151084; AT5G26360 T-complex protein 1 subunit T-complex protein 1 subunit gamma Q5Z6U5,Q6K3R8 Q5Z6U5_ORYSJ,Q6K3R8_ORYSJ Os06g0538000 Os06g0538000 OSNPB_060538000 P0551A03.30,Os02g0247200 OSJNBa0090H18.25 OSNPB_020247200 FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. ENOG411DYHB F4F15.40 Q9SV11 Q9SV11_ARATH At3g51930 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g51930) (Uncharacterized protein F4F15.40) 45278 At3g51930 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g51930) (Uncharacterized protein F4F15.40) locus:2083710; AT3G51930 WD domain G-beta repeat Os01g0946100 protein (p0660F12.30 protein) Q94CQ0 Q94CQ0_ORYSJ P0660F12.30 Os01g0946100 OSNPB_010946100 ENOG411DYHE Q1PFI4 FB69_ARATH F-box protein At1g60400 45864 F-box protein At1g60400 locus:2195603; AT1G60400 FBOX Os02g0178200 protein A0A0P0VFJ1 A0A0P0VFJ1_ORYSJ Os02g0178200 OSNPB_020178200 ENOG411DYHD STR7 Q1JPN0 STR7_ARATH Rhodanese-like domain-containing protein 7 (Sulfurtransferase 7) (AtStr7) 52677 Rhodanese-like domain-containing protein 7 (Sulfurtransferase 7) (AtStr7) locus:2064796; AT2G40760 UPF0176 protein Os05g0323100 protein Q0DJ66 Q0DJ66_ORYSJ Os05g0323100 Os05g0323100 OsJ_18063 OSNPB_050323100 ENOG411DYHG PUB27,PUB28 Q9FLF4,Q9LXE3 PUB27_ARATH,PUB28_ARATH U-box domain-containing protein 27 (EC 2.3.2.27) (Plant U-box protein 27) (RING-type E3 ubiquitin transferase PUB27),U-box domain-containing protein 28 (EC 2.3.2.27) (Plant U-box protein 28) (RING-type E3 ubiquitin transferase PUB28) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 46767,45775 U-box domain-containing protein 27 (EC 2.3.2.27) (Plant U-box protein 27) (RING-type E3 ubiquitin transferase PUB27),U-box domain-containing protein 28 (EC 2.3.2.27) (Plant U-box protein 28) (RING-type E3 ubiquitin transferase PUB28) ubiquitin-protein transferase activity [GO:0004842]; response to chitin [GO:0010200] locus:2174814;,locus:2144846; AT5G64660,AT5G09800 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q6ETF7,A0A0P0WAA1 Q6ETF7_ORYSJ,A0A0P0WAA1_ORYSJ Os02g0540700 OJ1298_H07.14 OSNPB_020540700,Os04g0418500 OSNPB_040418500 ENOG411DYHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0658500 protein Q67U32 Q67U32_ORYSJ Os06g0658500 B1047G05.12 OSNPB_060658500 P0677B10.27 ENOG411DYHI FLN1 Q9M394 SCKL1_ARATH Fructokinase-like 1, chloroplastic (PEP-associated protein 6) (pfkB-type carbohydrate kinase family protein 2) DISRUPTION PHENOTYPE: Albino seedlings leading to lethality. {ECO:0000269|PubMed:21949211, ECO:0000269|PubMed:22770232}. FUNCTION: Required for proper chloroplast development, most likely through regulating plastid-encoded polymerase (PEP) dependent chloroplast transcription. Acts as a component of the transcriptionally active plastid chromosome that is required for plastid gene expression. {ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20511297, ECO:0000269|PubMed:21949211, ECO:0000269|PubMed:22770232}. MISCELLANEOUS: RNAi plants display abnormal plastids lacking internal membrane structures. {ECO:0000269|PubMed:20511297}. ARA:AT3G54090-MONOMER; 53781 Fructokinase-like 1, chloroplastic (PEP-associated protein 6) (pfkB-type carbohydrate kinase family protein 2) chloroplast [GO:0009507]; chloroplast nucleoid [GO:0042644]; cytoplasm [GO:0005737]; nucleoid [GO:0009295]; nucleus [GO:0005634]; kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; protein self-association [GO:0043621]; chloroplast organization [GO:0009658]; transcription from plastid promoter [GO:0042793] locus:2080270; AT3G54090 pfkB family carbohydrate kinase Os01g0851000 protein (Putative fructokinase) (cDNA clone:J013000K08, full insert sequence) Q5N7A1 Q5N7A1_ORYSJ Os01g0851000 Os01g0851000 OSNPB_010851000 P0529H11.26 ENOG411DYHH SCAMP3,SCAMP5,SCAMP2,SC3 Q9M5P2,Q9SXA5,A0A1P8AXH0,A0A1P8ANB7,F4I7E4,F4HTI7 SCAM3_ARATH,SCAM5_ARATH,A0A1P8AXH0_ARATH,A0A1P8ANB7_ARATH,F4I7E4_ARATH,F4HTI7_ARATH Secretory carrier-associated membrane protein 3 (AtSC3) (Secretory carrier membrane protein 3),Secretory carrier-associated membrane protein 5 (Secretory carrier membrane protein 5),Secretory carrier-associated membrane protein (Secretory carrier membrane protein) FUNCTION: Probably involved in membrane trafficking. {ECO:0000250}.,FUNCTION: Probably involved in membrane trafficking. {ECO:0000256|RuleBase:RU363122}. R-ATH-6798695; 32613,32628,27331,31802,33173,30942 Secretory carrier-associated membrane protein 3 (AtSC3) (Secretory carrier membrane protein 3),Secretory carrier-associated membrane protein 5 (Secretory carrier membrane protein 5),Secretory carrier-associated membrane protein (Secretory carrier membrane protein) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; transport vesicle membrane [GO:0030658]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transport vesicle membrane [GO:0030658]; protein transport [GO:0015031] locus:2008465;,locus:2202119; AT1G61250,AT1G11180 secretory carrier-associated membrane protein NA NA NA NA NA NA NA ENOG411DYHK GT14 Q84R16 GT14_ARATH Probable xyloglucan galactosyltransferase GT14 (EC 2.4.1.-) (Glycosyltransferase 14) (AtGT14) FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 60991 Probable xyloglucan galactosyltransferase GT14 (EC 2.4.1.-) (Glycosyltransferase 14) (AtGT14) cell wall [GO:0005618]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, stems, stamens and carpels. {ECO:0000269|PubMed:15020758}. locus:2129281; AT4G13990 Exostosin family NA NA NA NA NA NA NA ENOG411DYHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Aquaporin NIP4-1 (NOD26-like intrinsic protein 4-1) (OsNIP4;1) Q9ASI1 NIP41_ORYSJ NIP4-1 Os01g0112400 LOC_Os01g02190 OsJ_00101 OSJNBb0032H19.9 P0439B06.35 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411DYHM MJP23.7 F4JYU0 F4JYU0_ARATH DNA mismatch repair protein MutS, type 2 87963 DNA mismatch repair protein MutS, type 2 mismatch repair complex [GO:0032300]; ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA-dependent ATPase activity [GO:0008094]; endonuclease activity [GO:0004519]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298]; negative regulation of DNA recombination [GO:0045910] locus:2166572; AT5G54090 DNA mismatch repair MutS family protein Os10g0509000 protein (Fragment) A0A0P0XWQ1 A0A0P0XWQ1_ORYSJ Os10g0509000 OSNPB_100509000 ENOG411DYHN AGD7,AGD6 O80925,Q9M354 AGD7_ARATH,AGD6_ARATH ADP-ribosylation factor GTPase-activating protein AGD7 (ARF GAP AGD7) (Protein ARF-GAP DOMAIN 7) (AtAGD7) (Protein PDE1 SUPPRESSOR 1),Probable ADP-ribosylation factor GTPase-activating protein AGD6 (ARF GAP AGD6) (Protein ARF-GAP DOMAIN 6) (AtAGD6) (Protein ZIGA2) FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Involved in protein trafficking by controlling ARF1 activity; may participate in COPI vesicle formation at the Golgi complex. {ECO:0000269|PubMed:17307897}.,FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). {ECO:0000250}. MISCELLANEOUS: Plants overexpressing AGD7 show a relocation of proteins from the Golgi complex to the endoplasmic reticulum. R-ATH-6811434; 49252,49724 ADP-ribosylation factor GTPase-activating protein AGD7 (ARF GAP AGD7) (Protein ARF-GAP DOMAIN 7) (AtAGD7) (Protein PDE1 SUPPRESSOR 1),Probable ADP-ribosylation factor GTPase-activating protein AGD6 (ARF GAP AGD6) (Protein ARF-GAP DOMAIN 6) (AtAGD6) (Protein ZIGA2) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; vesicle-mediated transport [GO:0016192],cytosol [GO:0005829]; nucleus [GO:0005634]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in leaves, stems, flower buds and flowers. {ECO:0000269|PubMed:11572485}. locus:2040691;,locus:2084360; AT2G37550,AT3G53710 ADP-ribosylation factor GTPase-activating protein ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed (Os03g0278400 protein) (cDNA clone:J023040P09, full insert sequence) Q10N88 Q10N88_ORYSJ LOC_Os03g17020 Os03g0278400 OsJ_10347 OSNPB_030278400 ENOG411ECS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os05g0421675 protein,Os01g0721750 protein,Os07g0653366 protein,Os01g0668650 protein A0A0P0WMI8,A0A0N7KDN2,A0A0P0X9R8,A0A0P0V699 A0A0P0WMI8_ORYSJ,A0A0N7KDN2_ORYSJ,A0A0P0X9R8_ORYSJ,A0A0P0V699_ORYSJ Os05g0421675 OSNPB_050421675,Os01g0721750 OSNPB_010721750,Os07g0653366 OSNPB_070653366,Os01g0668650 OSNPB_010668650 ENOG411ECSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor-A protein 1 N-terminal domain NA NA NA NA NA NA NA ENOG411ECSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411ECSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0359400 protein (Powdery mildew resistance protein PM3b-like protein) (cDNA clone:001-116-F10, full insert sequence) (cDNA clone:J013063I04, full insert sequence) (cDNA clone:J013110O03, full insert sequence) Q5ZAJ9 Q5ZAJ9_ORYSJ B1164G11.13-1 P0514H03.33-1 Os01g0359400 OSNPB_010359400 ENOG411ECSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411ECSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os01g0810800 protein (cDNA, clone: J100063K14, full insert sequence),Os01g0810600 protein,Os01g0811001 protein B7FAC9,A0A0P0V9G7,A0A0N7KDY0 B7FAC9_ORYSJ,A0A0P0V9G7_ORYSJ,A0A0N7KDY0_ORYSJ Os01g0810800 OsJ_03824 OSNPB_010810800,Os01g0810600 OSNPB_010810600,Os01g0811001 OSNPB_010811001 ENOG411ECSH Q9LS14 Q9LS14_ARATH At5g38070 (RING/FYVE/PHD zinc finger superfamily protein) (Similarity to unknown protein) 29048 At5g38070 (RING/FYVE/PHD zinc finger superfamily protein) (Similarity to unknown protein) integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270] locus:2144441; AT5G38070 Protein of unknown function (DUF3675) NA NA NA NA NA NA NA ENOG411ECSK MEE39,F16L2_130 C0LGP2,Q9LZT8,A0A1I9LN97 MEE39_ARATH,Q9LZT8_ARATH,A0A1I9LN97_ARATH Probable LRR receptor-like serine/threonine-protein kinase MEE39 (EC 2.7.11.1) (Protein MATERNAL EFFECT EMBRYO ARREST 39),Protein kinase superfamily protein (Protein kinase-like),Leucine-rich repeat protein kinase family protein DISRUPTION PHENOTYPE: Endosperm development arrested. {ECO:0000269|PubMed:15634699}. FUNCTION: Receptor-like serine/threonine-kinase required during the endosperm development in seeds. {ECO:0000269|PubMed:15634699}. 2.7.11.1 98678,21550,96134 Probable LRR receptor-like serine/threonine-protein kinase MEE39 (EC 2.7.11.1) (Protein MATERNAL EFFECT EMBRYO ARREST 39),Protein kinase superfamily protein (Protein kinase-like),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; embryo development ending in seed dormancy [GO:0009793]; endosperm development [GO:0009960],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2078176;,locus:2077112; AT3G46330,AT3G45920 STYKc NA NA NA NA NA NA NA ENOG411ECSJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411ECI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os09g0303100 protein,Os08g0351200 protein (cDNA, clone: J065219E08, full insert sequence) B9G2R1,B7F941 B9G2R1_ORYSJ,B7F941_ORYSJ Os09g0303100 OsJ_28774 OSNPB_090303100,Os08g0351200 OSNPB_080351200 ENOG411ECI2 DOF1.1,OBP2 Q8L9V6,Q2V4Q1 DOF11_ARATH,Q2V4Q1_ARATH Dof zinc finger protein DOF1.1 (AtDOF1.1) (OBF-binding protein 2),Dof-type zinc finger DNA-binding family protein FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. 35589,36507 Dof zinc finger protein DOF1.1 (AtDOF1.1) (OBF-binding protein 2),Dof-type zinc finger DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regionalization [GO:0003002]; regulation of glucosinolate biosynthetic process [GO:0010439]; regulation of transcription, DNA-templated [GO:0006355]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Predominantly expressed in leaves and roots. {ECO:0000269|PubMed:10758484}. locus:2026595; AT1G07640 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411ECIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411ECIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-box LRR-repeat protein Os07g0550300 protein A0A0P0X7Q4 A0A0P0X7Q4_ORYSJ Os07g0550300 OSNPB_070550300 ENOG411ECIC CSI2 Q9C6Y4,A0A1P8ARA5,A0A1P8AR52 CSI2_ARATH,A0A1P8ARA5_ARATH,A0A1P8AR52_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 2,CELLULOSE SYNTHASE INTERACTIVE 2 FUNCTION: Regulator of the microtubular cytoskeleton. Microtubule-associated protein involved in the association of cellulase synthase (CESA) complexes (CSCs) and cortical microtubules. Promotes dynamics of CSCs in the plasma membrane. Regulates primary cell wall biosynthesis and cellulose microfibrils organization. {ECO:0000250|UniProtKB:F4IIM1}. 230854,233814,219194 Protein CELLULOSE SYNTHASE INTERACTIVE 2,CELLULOSE SYNTHASE INTERACTIVE 2 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; cell wall organization [GO:0071555]; multicellular organism development [GO:0007275]; regulation of cell shape [GO:0008360]; regulation of growth [GO:0040008] locus:2205866; AT1G44120 domain-containing protein NA NA NA NA NA NA NA ENOG411ECIB EXO70B2 Q9LMJ4 E70B2_ARATH Exocyst complex component EXO70B2 (AtExo70b2) (Exocyst subunit Exo70 family protein B2) DISRUPTION PHENOTYPE: No discernible phenotype in normal conditions (PubMed:16942608, PubMed:21199889, PubMed:27956469). Altered mannitol (drought)-promoted stomatal closure (PubMed:27956469). Enhanced susceptibility to the bacterial pathogen P.syringae pv. maculicola and abnormal papilla formation, with an unusual wide halo made of vesicle-like structures upon inoculation by the fungal pathogen B.graminis hordei (PubMed:21199889). Reduced sensitivity to pathogen-associated molecular patterns (PAMPs) (e.g. bacterial elicitor flg22, bacterial transcription factor elf18, Pep1 and fungal chitin) leading to a reduced production of reactive oxygen species (ROS) and impaired induction of several plant defense genes. Increased disease susceptibility to the biotrophic oomycete H.arabidopsidis (PubMed:23170036). {ECO:0000269|PubMed:16942608, ECO:0000269|PubMed:21199889, ECO:0000269|PubMed:23170036, ECO:0000269|PubMed:27956469}. FUNCTION: Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole. Regulates autophagosome formation and autophagy-related Golgi-independent import into the vacuole (By similarity). Positive regulator of defense responses to pathogenic bacteria (e.g. P.syringae pv. maculicola), to the biotrophic oomycete H.arabidopsidis and to fungi (e.g. B.graminis hordei), especially in cell wall apposition formation related to plant defense (PubMed:21199889, PubMed:23170036). Required for both immediate and later responses triggered by pathogen-associated molecular patterns (PAMPs) (PubMed:23170036). Positive regulator of abscisic acid (ABA)-independent mannitol (drought)-promoted stomatal closure (PubMed:27956469). {ECO:0000250|UniProtKB:Q9FGH9, ECO:0000269|PubMed:21199889, ECO:0000269|PubMed:23170036, ECO:0000269|PubMed:27956469}. R-ATH-5620916; 67715 Exocyst complex component EXO70B2 (AtExo70b2) (Exocyst subunit Exo70 family protein B2) cytoplasm [GO:0005737]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; nucleus [GO:0005634]; phagocytic vesicle [GO:0045335]; plasma membrane [GO:0005886]; protein self-association [GO:0043621]; cell wall modification [GO:0042545]; defense response [GO:0006952]; exocytosis [GO:0006887]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of defense response to oomycetes [GO:1902290]; regulation of defense response to fungus [GO:1900150]; regulation of stomatal closure [GO:0090333]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; response to molecule of bacterial origin [GO:0002237]; response to molecule of fungal origin [GO:0002238]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Mostly expressed in leaves and, to a lower extent, in roots, cotyledons, internodes, flower buds, siliques and anthers. {ECO:0000269|PubMed:20943851}. locus:2007347; AT1G07000 exocyst subunit exo70 family protein B2 NA NA NA NA NA NA NA ENOG411ECIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 OSJNBa0010H02.11 protein (Os04g0552700 protein) (cDNA clone:J033109L03, full insert sequence) Q7XT38 Q7XT38_ORYSJ Os04g0552700 Os04g0552700 OSJNBa0010H02.11 OSNPB_040552700 ENOG411DWB8 Q9FT93 Q9FT93_ARATH KRR1 small subunit processome component (KRR-R motif-containing protein 1) FUNCTION: Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. {ECO:0000256|PIRNR:PIRNR006515}. R-ATH-6791226; 45323 KRR1 small subunit processome component (KRR-R motif-containing protein 1) nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; RNA binding [GO:0003723]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2150818; AT5G08420 Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (By similarity) KRR1 small subunit processome component (KRR-R motif-containing protein 1) Q7XDT2,A0A0P0V7B9 Q7XDT2_ORYSJ,A0A0P0V7B9_ORYSJ Os10g0452800 LOC_Os10g31520 Os10g0452800 OsJ_31745 OSNPB_100452800,Os01g0713800 OSNPB_010713800 FUNCTION: Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. {ECO:0000256|PIRNR:PIRNR006515}. ENOG411DWB1 O48679 O48679_ARATH F3I6.5 protein (Transducin/WD40 repeat-like superfamily protein) 45797 F3I6.5 protein (Transducin/WD40 repeat-like superfamily protein) locus:2032452; AT1G24130 WD domain G-beta repeat Os06g0238700 protein A0A0P0WUH4 A0A0P0WUH4_ORYSJ Os06g0238700 OSNPB_060238700 ENOG411DWB0 MIK1,PXL1,TDR Q9M0G7,Q9FRS6,Q9FII5 MIK1_ARATH,PXL1_ARATH,TDR_ARATH MDIS1-interacting receptor like kinase 1 (AtMIK1) (Leucine-rich repeat receptor-like protein kinase PXL2) (EC 2.7.11.1) (Protein PHLOEM INTERCALATED WITH XYLEM-LIKE 2),Leucine-rich repeat receptor-like protein kinase PXL1 (EC 2.7.11.1) (Protein PHLOEM INTERCALATED WITH XYLEM-LIKE 1),Leucine-rich repeat receptor-like protein kinase TDR (EC 2.7.11.1) (Protein PHLOEM INTERCALATED WITH XYLEM) (Tracheary element differentiation inhibitory factor receptor) (AtTDR) (TDIF receptor) DISRUPTION PHENOTYPE: Reduced procambial cells number, and adjacent or interspersed xylem and phloem formation. {ECO:0000269|PubMed:17570668}.,DISRUPTION PHENOTYPE: Reduced procambial cells number, and adjacent or interspersed xylem and phloem formation. {ECO:0000269|PubMed:17570668, ECO:0000269|PubMed:18812507}. FUNCTION: Involved in the regulation of procambium maintenance and polarity during vascular-tissue development (PubMed:17570668). Involved in the pollen tube perception of the female signal (PubMed:26863186). Phosphorylates MDSI1 (PubMed:26863186). {ECO:0000269|PubMed:17570668, ECO:0000269|PubMed:26863186}.,FUNCTION: Involved in the regulation of procambium maintenance and polarity during vascular-tissue development (PubMed:17570668). Phosphorylates HIRD11 and LHCA1 in vitro (PubMed:25602612). {ECO:0000269|PubMed:17570668}.,FUNCTION: Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins. {ECO:0000269|PubMed:17570668, ECO:0000269|PubMed:18812507}. 2.7.11.1 110478,113820,114678 MDIS1-interacting receptor like kinase 1 (AtMIK1) (Leucine-rich repeat receptor-like protein kinase PXL2) (EC 2.7.11.1) (Protein PHLOEM INTERCALATED WITH XYLEM-LIKE 2),Leucine-rich repeat receptor-like protein kinase PXL1 (EC 2.7.11.1) (Protein PHLOEM INTERCALATED WITH XYLEM-LIKE 1),Leucine-rich repeat receptor-like protein kinase TDR (EC 2.7.11.1) (Protein PHLOEM INTERCALATED WITH XYLEM) (Tracheary element differentiation inhibitory factor receptor) (AtTDR) (TDIF receptor) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; cell differentiation [GO:0030154]; procambium histogenesis [GO:0010067]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; vasculature development [GO:0001944],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell differentiation [GO:0030154]; procambium histogenesis [GO:0010067]; vasculature development [GO:0001944],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell division [GO:0051301]; procambium histogenesis [GO:0010067]; secondary shoot formation [GO:0010223]; vasculature development [GO:0001944]; xylem development [GO:0010089] TISSUE SPECIFICITY: Expressed in pollen tubes. {ECO:0000269|PubMed:26863186}.,TISSUE SPECIFICITY: Widely expressed along the vascular strands. In roots and hypocotyls, confined to procambial cells. {ECO:0000269|PubMed:17570668, ECO:0000269|PubMed:18812507}. locus:2139885;,locus:2025545;,locus:2161158; AT4G28650,AT1G08590,AT5G61480 Leucine-rich repeat receptor-like protein kinase Os02g0111800 protein (Putative CLAVATA1 receptor kinase),Os08g0148300 protein (Fragment),Os03g0145102 protein Q6Z8Y3,Q0J814,A0A0P0VSY6 Q6Z8Y3_ORYSJ,Q0J814_ORYSJ,A0A0P0VSY6_ORYSJ Os02g0111800 Os02g0111800 OSNPB_020111800 P0501G04.29,Os08g0148300 Os08g0148300 OSNPB_080148300,Os03g0145102 OSNPB_030145102 ENOG411DWB3 VPS29 Q9STT2 VPS29_ARATH Vacuolar protein sorting-associated protein 29 (Protein MAIGO 1) (Vesicle protein sorting 29) DISRUPTION PHENOTYPE: Dwarf phenotype. Reduced primary root length and fewer secondary roots. Abnormal cotyledon shape, number and positioning. Accumulation of storage proteins globulin 12S and albumin 2S in dry seeds. {ECO:0000269|PubMed:16926167, ECO:0000269|PubMed:17889650}. Reduced but still significant response to gravity. mag1 represses the phenotype of zig-1.Similar phenotype to mag-1 single mutant. FUNCTION: Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. Required for the auxin-carrier protein PIN2 sorting to the lytic vacuolar pathway and the PIN1 recycling to the plasma membrane. Also involved in the efficient sorting of seed storage proteins globulin 12S and albumin 2S. The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane. {ECO:0000269|PubMed:17889650, ECO:0000269|PubMed:19004783}. 20968 Vacuolar protein sorting-associated protein 29 (Protein MAIGO 1) (Vesicle protein sorting 29) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; multivesicular body [GO:0005771]; retromer complex [GO:0030904]; zinc ion binding [GO:0008270]; protein targeting to vacuole [GO:0006623]; receptor recycling [GO:0001881]; retrograde transport, endosome to Golgi [GO:0042147]; vacuolar transport [GO:0007034] locus:2100362; AT3G47810 vacuolar protein Vacuolar protein sorting-associated protein 29 Q6ETY0 Q6ETY0_ORYSJ Os02g0265400 Os02g0265400 OsJ_06169 OSNPB_020265400 P0006C08.21 ENOG411DWB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Os03g0119100 protein (Fragment),Os10g0524400 protein (Phospholipase D beta 1, putative, expressed) (Putative phospholipase) (cDNA clone:J023061O15, full insert sequence),Os10g0524400 protein Q0DVP7,Q8H093,A0A0P0XWU4,A0A0P0XX01 Q0DVP7_ORYSJ,Q8H093_ORYSJ,A0A0P0XWU4_ORYSJ,A0A0P0XX01_ORYSJ Os03g0119100 OSNPB_030119100,Os10g0524400 LOC_Os10g38060 Os10g0524400 OSNPB_100524400,Os10g0524400 OSNPB_100524400 ENOG411DWB5 APD1,APD2,APD3,APD4 Q0WS06,Q6DBH0,A0A1P8AYU1,F4ISV9,F4IS11,B3H754,F4IS12,F4IS08 Q0WS06_ARATH,Q6DBH0_ARATH,A0A1P8AYU1_ARATH,F4ISV9_ARATH,F4IS11_ARATH,B3H754_ARATH,F4IS12_ARATH,F4IS08_ARATH RING/U-box superfamily protein (Uncharacterized protein At2g38190),At5g01450 (RING/U-box superfamily protein) (Uncharacterized protein At5g01450),RING/U-box superfamily protein 49058,49277,44795,44536,38423,45067,36661,49704 RING/U-box superfamily protein (Uncharacterized protein At2g38190),At5g01450 (RING/U-box superfamily protein) (Uncharacterized protein At5g01450),RING/U-box superfamily protein integral component of membrane [GO:0016021] locus:2179187;,locus:4515102961;,locus:2042922;,locus:505006305; AT2G38185,AT5G01450,AT2G38195,AT2G38220 RING Os05g0521000 protein A0A0P0WPM1 A0A0P0WPM1_ORYSJ Os05g0521000 OSNPB_050521000 ENOG411DWB4 LNK2 F4JCX9 LNK2_ARATH Protein LNK2 (Night light-inducible and clock-regulated 2) DISRUPTION PHENOTYPE: No differences in hypocotyl length when grown in complete darkness, but longer hypocotyls in plants under continuous white or red light (PubMed:23818596). Lengthened circadian cycle (PubMed:25012192). {ECO:0000269|PubMed:23818596, ECO:0000269|PubMed:25012192}. FUNCTION: Transcriptional coactivator necessary for expression of the clock genes PRR5 and TOC1 (PubMed:25012192, PubMed:25848708). Antagonizes REV8 function in the regulation of anthocyanin accumulation (PubMed:25848001). Involved in red light input to the clock (PubMed:25012192). Activates clock-controlled genes with afternoon peak (PubMed:23818596). Mediates light inhibition of hypocotyl elongation (PubMed:23818596). Unable to bind to DNA, but recruited to the evening element (EE)-containing region of the PRR5 and TOC1 promoters through its interaction with the DNA binding proteins REV8 and REV4 (PubMed:25012192, PubMed:25848708). {ECO:0000269|PubMed:23818596, ECO:0000269|PubMed:25012192, ECO:0000269|PubMed:25848001, ECO:0000269|PubMed:25848708}. 73593 Protein LNK2 (Night light-inducible and clock-regulated 2) nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; rhythmic process [GO:0048511]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seedlings, cotyledons, inflorescences and siliques. Highest expression in root tips, young leaves and vasculatur tissues. {ECO:0000269|PubMed:25012192}. locus:2096981; AT3G54500 NA Os01g0498200 protein (Fragment) Q0JMJ0 Q0JMJ0_ORYSJ Os01g0498200 Os01g0498200 OSNPB_010498200 ENOG411DWB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q0JKA9,Q5N7M4 Q0JKA9_ORYSJ,Q5N7M4_ORYSJ Os01g0686300 Os01g0686300 OSNPB_010686300,Os01g0686200 OSNPB_010686200 P0478H03.36 P0519D04.4 ENOG411DWBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sequence-specific DNA binding Homeobox-leucine zipper protein HOX7 (HD-ZIP protein HOX7) (Homeodomain transcription factor HOX7) (OsHox7) Q0E0A6 HOX7_ORYSJ HOX7 Os02g0565600 LOC_Os02g35770 P0020C11.33 FUNCTION: Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. ENOG411DWBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD Os12g0527800 protein (PHD-finger family protein, expressed) (cDNA clone:J033084A01, full insert sequence),Os12g0527800 protein (Fragment) Q2QPI8,A0A0P0YAN5 Q2QPI8_ORYSJ,A0A0P0YAN5_ORYSJ LOC_Os12g34330 Os12g0527800 OSNPB_120527800,Os12g0527800 OSNPB_120527800 ENOG411DWBZ T8G24.2,F17A17.37 Q9C6U3,Q9SFB1 Q9C6U3_ARATH,Q9SFB1_ARATH Uncharacterized protein T8G24.2 (Fragment),F17A17.37 protein (Uncharacterized protein At3g08030) 34701,39066 Uncharacterized protein T8G24.2 (Fragment),F17A17.37 protein (Uncharacterized protein At3g08030) cell wall [GO:0005618]; plasma membrane [GO:0005886] locus:2077467; AT3G08030 Protein of unknown function (DUF642) Expressed protein (Os03g0807700 protein) (cDNA clone:001-025-D10, full insert sequence),Os07g0206900 protein (Fragment),Os03g0807700 protein (Fragment) Q84M59,A0A0P0X3Z7,A0A0P0W4K0 Q84M59_ORYSJ,A0A0P0X3Z7_ORYSJ,A0A0P0W4K0_ORYSJ Os03g0807700 LOC_Os03g59300 Os03g0807700 OsJ_13041 OSJNBa0059E14.9 OSNPB_030807700,Os07g0206900 OSNPB_070206900,Os03g0807700 OSNPB_030807700 ENOG411DWBQ Q8RWE7 Q8RWE7_ARATH ARM repeat superfamily protein (At1g51350) (Uncharacterized protein At1g51350) R-ATH-6798695; 72393 ARM repeat superfamily protein (At1g51350) (Uncharacterized protein At1g51350) locus:2008246; AT1G51350 armadillo repeat-containing protein Os11g0638900 protein (Fragment) Q0IRG2 Q0IRG2_ORYSJ Os11g0638900 OSNPB_110638900 ENOG411DWBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain MYB transcription factor-like (Os06g0543200 protein) (cDNA clone:J033048N17, full insert sequence) Q5Z6X2 Q5Z6X2_ORYSJ Os06g0543200 Os06g0543200 B1068H08.25 OsJ_21617 OSNPB_060543200 ENOG411DWBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinesterase Pectinesterase (EC 3.1.1.11) Q7XUZ9 Q7XUZ9_ORYSJ Os04g0458900 OsJ_15044 OSJNBa0036B21.20 OSNPB_040458900 ENOG411DWBR AP17 Q84WL9 AP2S_ARATH AP-2 complex subunit sigma (Adaptor AP-2 17 kDa protein) (Adaptor-related protein complex 2 subunit sigma) (Clathrin assembly protein 2 small chain) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Sigma2-adaptin) FUNCTION: Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The complex binds polyphosphoinositides (By similarity). {ECO:0000250}. R-ATH-8856825;R-ATH-8856828; Endocytosis (04144),Huntington's disease (05016),Synaptic vesicle cycle (04721),Endocrine and other factor-regulated calcium reabsorption (04961) 17067 AP-2 complex subunit sigma (Adaptor AP-2 17 kDa protein) (Adaptor-related protein complex 2 subunit sigma) (Clathrin assembly protein 2 small chain) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Sigma2-adaptin) clathrin-coated pit [GO:0005905]; plasma membrane [GO:0005886]; protein transporter activity [GO:0008565]; endocytosis [GO:0006897] locus:2202415; AT1G47830 AP-2 complex subunit AP complex subunit sigma Q2QW51 Q2QW51_ORYSJ Os12g0207300 LOC_Os12g10560 Os12g0207300 OSNPB_120207300 ENOG411DWBU TYW1 Q8RXN5 TYW1_ARATH S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase (EC 4.1.3.44) (tRNA wybutosine-synthesizing protein 1 homolog) FUNCTION: Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine, an intermediate in wybutosine biosynthesis (By similarity). {ECO:0000250}. PATHWAY: tRNA modification; wybutosine-tRNA(Phe) biosynthesis. 4.1.3.44 72080 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase (EC 4.1.3.44) (tRNA wybutosine-synthesizing protein 1 homolog) mitochondrion [GO:0005739]; 4 iron, 4 sulfur cluster binding [GO:0051539]; FMN binding [GO:0010181]; lyase activity [GO:0016829]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114]; tRNA processing [GO:0008033] locus:2025152; AT1G75200 tRNA wybutosine-synthesizing protein 1 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase (EC 4.1.3.44) (tRNA wybutosine-synthesizing protein 1 homolog),Os10g0365900 protein Q8H8N3,A0A0P0XTB0 TYW1_ORYSJ,A0A0P0XTB0_ORYSJ TYW1 Os03g0775300 LOC_Os03g56390 OSJNBa0070N04.14,Os10g0365900 OSNPB_100365900 FUNCTION: Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine, an intermediate in wybutosine biosynthesis (By similarity). {ECO:0000250}. ENOG411DWBT MMN10.5 F4JXC7 F4JXC7_ARATH DNA-binding protein 47090 DNA-binding protein DNA binding [GO:0003677] locus:2168088; AT5G59830 NA NA NA NA NA NA NA NA ENOG411DWBW F8A24.12 Q9LZF8,Q0WSF6,O81064,Q9SF86,A0A1P8B0K8,F4IJP2 Q9LZF8_ARATH,Q0WSF6_ARATH,O81064_ARATH,Q9SF86_ARATH,A0A1P8B0K8_ARATH,F4IJP2_ARATH At5g03320 (Protein kinase superfamily protein) (Protein kinase-like) (Protein serine/threonine kinase),Protein kinase superfamily protein (Uncharacterized protein At2g39110),At2g28940 (Protein kinase superfamily protein) (Uncharacterized protein At2g28940),Protein kinase superfamily protein (Uncharacterized protein At3g09830) (Uncharacterized protein F8A24.12),Protein kinase superfamily protein FUNCTION: Functions redundantly with PCRK1 in basal resistance against bacterial pathogens and in regulation of plant immunity. Functions together with PCRK1 downstream of the pathogen-associated molecular pattern (PAMP) receptor FLS2. Contributes to the induction of SARD1 and CBP60G, which are transcriptional activator of ICS1, an enzyme involved in salicylate (SA) biosynthesis upon pathogen attack. {ECO:0000269|PubMed:27208222}.,FUNCTION: Involved in the activation of early immune responses. Plays a role in pattern-triggered immunity (PTI) induced by pathogen-associated molecular patterns (PAMPs) and damage-associated molecular patterns (DAMPs) (PubMed:25711411). Contributes to PTI in response to the bacterial pathogen Pseudomonas syringae pv maculicola strain ES4326 (PubMed:25711411, PubMed:26237268). Contributes to PTI in response to the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:25711411). Functions redundantly with PCRK2 in basal resistance against bacterial pathogens and in regulation of plant immunity. Functions together with PCRK2 downstream of the PAMP receptor FLS2. Contributes to the induction of SARD1 and CBP60G, which are transcriptional activator of ICS1, an enzyme involved in salicylate (SA) biosynthesis upon pathogen attack (PubMed:27208222). {ECO:0000269|PubMed:25711411, ECO:0000269|PubMed:26237268, ECO:0000269|PubMed:27208222}. 47006,48883,51940,46790,47279,39122 At5g03320 (Protein kinase superfamily protein) (Protein kinase-like) (Protein serine/threonine kinase),Protein kinase superfamily protein (Uncharacterized protein At2g39110),At2g28940 (Protein kinase superfamily protein) (Uncharacterized protein At2g28940),Protein kinase superfamily protein (Uncharacterized protein At3g09830) (Uncharacterized protein F8A24.12),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; pattern recognition receptor signaling pathway [GO:0002221]; protein phosphorylation [GO:0006468]; regulation of salicylic acid biosynthetic process [GO:0080142],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response to bacterium [GO:0042742]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; pattern recognition receptor signaling pathway [GO:0002221]; protein phosphorylation [GO:0006468]; regulation of salicylic acid biosynthetic process [GO:0080142]; response to bacterium [GO:0009617],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2142639;,locus:2064920;,locus:2053250;,locus:2085069; AT5G03320,AT2G39110,AT2G28940,AT3G09830 receptor-like protein kinase Os02g0819600 protein Q6K720 Q6K720_ORYSJ Os02g0819600 OJ1202_E07.22 OsJ_08896 OSNPB_020819600 P0474F11.3 ENOG411DWBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acidPPc Acid phosphatase ACP2 (Os01g0693300 protein) (Phosphatidic acid phosphatase beta-like) (cDNA clone:J033030N09, full insert sequence) Q5N7Q9 Q5N7Q9_ORYSJ Os01g0693300 Os01g0693300 OSNPB_010693300 P0034C09.38 ENOG411DWBI ATG18F,G18F Q9FH32,A0A1R7T3J2 AT18F_ARATH,A0A1R7T3J2_ARATH Autophagy-related protein 18f (AtATG18f),Autophagy 18 F-like protein FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity). {ECO:0000250}. 82780,70833 Autophagy-related protein 18f (AtATG18f),Autophagy 18 F-like protein cytoplasm [GO:0005737]; pre-autophagosomal structure membrane [GO:0034045]; vacuolar membrane [GO:0005774]; autophagy [GO:0006914]; protein transport [GO:0015031]; response to starvation [GO:0042594]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in roots, flowers and leaves. {ECO:0000269|PubMed:15860012}. locus:2157523; AT5G54730 Breast carcinoma amplified sequence 3 Os01g0786900 protein (cDNA clone:J033069O17, full insert sequence) A2ZYJ2 A2ZYJ2_ORYSJ Os01g0786900 Os01g0786900 OsJ_03714 OSNPB_010786900 ENOG411DWBH CSK F4HVG8 CSK_ARATH Chloroplast sensor kinase, chloroplastic (EC 2.7.13.3) DISRUPTION PHENOTYPE: Abnormal regulation of psaA gene expression by light variation and reduced plastoquinone pool (PubMed:18632566, PubMed:22039472). Accentuated superimposition effect of light leading to plastoquinone oxidation. Increased level of non-photochemical quenching, faster pre-steady state kinetics of the 'Kautsky' transient (PubMed:22039472). {ECO:0000269|PubMed:18632566, ECO:0000269|PubMed:22039472}. FUNCTION: Sensor kinase required for sensing the plastoquinone redox state involved in both photosystems stoichiometry adjustment (e.g. long-term adaptation via transcriptional regulation of reaction center genes of photosystems I and II) and state transitions (e.g. short-term adaptation involving reversible post-translational phosphorylation of light-harvesting complex II, LHC II), thus linking photosynthesis with gene expression in chloroplasts (PubMed:18632566, PubMed:22039472). Probably phosphorylates SIGA/SIG1 in response to plastoquinone redox state modification (PubMed:23754813). {ECO:0000269|PubMed:18632566, ECO:0000269|PubMed:22039472, ECO:0000269|PubMed:23754813}. 2.7.13.3 66843 Chloroplast sensor kinase, chloroplastic (EC 2.7.13.3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; kinase activity [GO:0016301]; protein histidine kinase activity [GO:0004673]; protein self-association [GO:0043621]; quinone binding [GO:0048038]; detection of redox state [GO:0051776]; photosystem stoichiometry adjustment [GO:0080005]; protein autophosphorylation [GO:0046777]; regulation of gene expression [GO:0010468]; regulation of photosynthesis [GO:0010109] locus:2008525; AT1G67840 NA Os12g0292900 protein (Fragment),Os12g0292900 protein A0A0N7KTX0,A0A0P0Y9B6,A0A0P0Y998 A0A0N7KTX0_ORYSJ,A0A0P0Y9B6_ORYSJ,A0A0P0Y998_ORYSJ Os12g0292900 OSNPB_120292900 ENOG411DWBK SCL8 Q9FYR7 SCL8_ARATH Scarecrow-like protein 8 (AtSCL8) (GRAS family protein 30) (AtGRAS-30) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 69150 Scarecrow-like protein 8 (AtSCL8) (GRAS family protein 30) (AtGRAS-30) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. locus:2184625; AT5G52510 Scarecrow-like protein Os02g0681900 protein (Putative gibberellin-insensitive protein OsGAI) (Scarecrow transcriptional regulator-like protein),OSJNBa0064M23.7 protein (Os04g0580300 protein) (cDNA clone:J023075P18, full insert sequence) Q84PD5,Q7X7C0 Q84PD5_ORYSJ,Q7X7C0_ORYSJ Os02g0681900 OJ1123_G04.1 OsJ_07941 OSNPB_020681900,Os04g0580300 OsJ_15890 OSJNBa0064M23.7 OSNPB_040580300 ENOG411DWBJ PSAF Q9SHE8 PSAF_ARATH Photosystem I reaction center subunit III, chloroplastic (Light-harvesting complex I 17 kDa protein) (PSI-F) FUNCTION: Participates in efficiency of electron transfer from plastocyanin to P700 (or cytochrome c553 in algae and cyanobacteria). This plastocyanin-docking protein contributes to the specific association of plastocyanin to PSI. {ECO:0000269|PubMed:10900198}. MISCELLANEOUS: Plants lacking PSAF have altered thylakoid structure and are not viable. MetaCyc:MONOMER-1092; 24173 Photosystem I reaction center subunit III, chloroplastic (Light-harvesting complex I 17 kDa protein) (PSI-F) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I reaction center [GO:0009538]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979] locus:2197515; AT1G31330 Photosystem I reaction center subunit III Os03g0778100 protein,Os03g0778100 protein (Photosystem I reaction center subunit III, chloroplast, putative, expressed) (Photosystem-1 F subunit) (cDNA clone:001-016-D02, full insert sequence) (cDNA clone:006-208-C12, full insert sequence) Q0DN30,Q8S7H8 Q0DN30_ORYSJ,Q8S7H8_ORYSJ Os03g0778100 Os03g0778100 OSNPB_030778100,OSJNBa0010I09.4 Os03g0778100 LOC_Os03g56670 OSNPB_030778100 ENOG411DWBM DSE1 Q3MV14 DSE1_ARATH Protein DECREASED SIZE EXCLUSION LIMIT 1 (AtDSE1) (Protein ALUMINUM TOLERANT 2) (Protein EMBRYO DEFECTIVE 2757) (Protein TANMEI) DISRUPTION PHENOTYPE: Defects in both embryo and seedling development, and pale yellow seeds. Die as embryos, probably because of intolerance to desiccation and abnormal protein and lipid body accumulation in mature seeds, but immature mutant seeds can be germinated in culture and lead to short life seedlings defective in shoot and root development, with reduced hypocotyls elongation in the dark (PubMed:16113228, PubMed:15266054). Seedlings accumulate less anthocyanin, are intolerant to desiccation, form trichomes on cotyledons, and have reduced accumulation of storage proteins and lipids (PubMed:16113228). Suppressor of the aluminum- (Al) hypersensitive mutant als3-1 that fails to halt root growth after Al exposure, does not accumulate CyclinB1;1 in the root tip, and fails to force differentiation of the quiescent center and is thus highly tolerant to high Al levels (PubMed:22345493). In dse1, reduced plasmodesmata (PD) formation and cell-to-cell transport during embryogenesis, due to reduced PD size exclusion limit. Dse1 embryos are developmentally retarded and accumulate anthocyanin at the junction between the cotyledons and hypocotyls, corresponding to the shoot apical meristem (SAM). Reduced apical dominance leading to the production of small abnormal flowers, often with altered organ numbers. Infertility due in part to the abnormal development of stamen with under-extended anther filaments that don't release pollen, and due in part to abnormal ovules lacking pollen attractiveness (PubMed:22411811). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:16113228, ECO:0000269|PubMed:22345493, ECO:0000269|PubMed:22411811}. Phenotype very similar to tan-1,embryo and seedling defective. Mutant plants had defects in both embryo and seedling development. Mutant seeds accumulate anthocyanin are intolerant to desiccation cotyledons did not curl and had often fused along one side of their margins. Trichomes were formed on the cotyledons during embryogenesis and the accumulation of storage proteins and lipids were reduced. Tan mutants die as embryos but immature mutant seeds can be germinated in culture. However tan mutant seedlings are defective in shoot and root development with stunted roots and hypocotyls that fail to elongate in the dark. True leaves rarely emerged and plants die at seedling stage.,Most mutant embryos were arrested at transition or heart stage with few reaching torpedo stage. Mutant seeds were desiccation intolerant and germinated poorly even when cultured on agar plates.,Similar to tan-1 lec1-2 embryo arrested mostly at transition or heart stage. Embryo defective; Cotyledon-D. Meinke-2004 FUNCTION: Involved in the formation of X-, Y-shaped and twinned plasmodesmata (PD), thus modelating PD size exclusion limit and regulating cell-to-cell transport (PubMed:22411811). Cell cycle checkpoint regulator that monitors and responds to DNA damage such as DNA cross-links, and triggers the halt of the cell cycle progression in the presence of DNA cross-linking agents. Mediates the active process of aluminum- (Al) dependent root growth inhibition and thus is required for response to Al toxicity (PubMed:22345493). Required for both early and late phases of embryo development as well as during seedling growth (PubMed:16113228, PubMed:15266054). Essential for signal transduction and development of both male and female organs (PubMed:22411811). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:16113228, ECO:0000269|PubMed:22345493, ECO:0000269|PubMed:22411811}. MISCELLANEOUS: 'Tanmei' means short life in Japanese. {ECO:0000303|PubMed:16113228}. 41986 Protein DECREASED SIZE EXCLUSION LIMIT 1 (AtDSE1) (Protein ALUMINUM TOLERANT 2) (Protein EMBRYO DEFECTIVE 2757) (Protein TANMEI) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; acquisition of desiccation tolerance in seed [GO:0048700]; cell cycle [GO:0007049]; cellular response to DNA damage stimulus [GO:0006974]; DNA integrity checkpoint [GO:0031570]; embryo development ending in seed dormancy [GO:0009793]; plant ovule development [GO:0048481]; plasmodesma organization [GO:0009663]; plasmodesmata-mediated intercellular transport [GO:0010497]; pollen development [GO:0009555]; positive regulation of cell cycle arrest [GO:0071158]; regulation of DNA repair [GO:0006282]; regulation of root development [GO:2000280]; response to aluminum ion [GO:0010044]; response to cisplatin [GO:0072718] DEVELOPMENTAL STAGE: Accumulates throughout the embryo and in endosperm (PubMed:16113228). Expressed throughout the plant life cycle, from embryogenesis to seed set. Accumulates in the shoot apex. In roots, confined to the vascular system. In anthers, observed when the filaments start to elongate, and remain expressed in later stages. Constitutively expressed in gynoecia (PubMed:22411811). {ECO:0000269|PubMed:16113228, ECO:0000269|PubMed:22411811}. TISSUE SPECIFICITY: Expressed at low levels in floral buds, leaves, stems, roots, and siliques, highest levels being in siliques that contain developing seeds. {ECO:0000269|PubMed:16113228, ECO:0000269|PubMed:22345493, ECO:0000269|PubMed:22411811}. locus:2123869; AT4G29860 guanine nucleotide-binding protein subunit beta-like protein 1 homolog Os06g0131100 protein (Transducin protein-like) (cDNA clone:001-124-D02, full insert sequence),Os06g0131100 protein Q5VSA6,A0A0P0WS42 Q5VSA6_ORYSJ,A0A0P0WS42_ORYSJ P0493C11.12-1 Os06g0131100 OSNPB_060131100,Os06g0131100 OSNPB_060131100 ENOG411DWBN XTH26 Q9SVV2 XTH26_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 26 (At-XTH26) (XTH-26) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. ARA:AT4G28850-MONOMER; 2.4.1.207 32924 Probable xyloglucan endotransglucosylase/hydrolase protein 26 (At-XTH26) (XTH-26) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] locus:2117838; AT4G28850 Xyloglucan endotransglucosylase hydrolase protein Os06g0335900 protein A0A0P0WW43 A0A0P0WW43_ORYSJ Os06g0335900 OSNPB_060335900 ENOG411DWBA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os08g0469000 protein (Putative nucleoid DNA-binding protein),Os09g0452400 protein (Putative aspartic proteinase nepenthesin I) (cDNA clone:001-114-C09, full insert sequence) Q6ZC30,Q67V02 Q6ZC30_ORYSJ,Q67V02_ORYSJ Os08g0469000 OsJ_27627 OSNPB_080469000 P0470B03.34,Os09g0452400 Os09g0452400 OSNPB_090452400 P0488D02.13 ENOG411DWBC COL11,COL12,BBX10 O23379,Q9LJ44,A0A1I9LPX4 COL11_ARATH,COL12_ARATH,A0A1I9LPX4_ARATH Putative zinc finger protein CONSTANS-LIKE 11,Zinc finger protein CONSTANS-LIKE 12,B-box type zinc finger protein with CCT domain-containing protein 36619,40470,40873 Putative zinc finger protein CONSTANS-LIKE 11,Zinc finger protein CONSTANS-LIKE 12,B-box type zinc finger protein with CCT domain-containing protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; zinc ion binding [GO:0008270] locus:2129860;,locus:2088748; AT4G15250,AT3G21880 zinc finger NA NA NA NA NA NA NA ENOG411DWBB RPN10 P55034 PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog (26S proteasome regulatory subunit RPN10) (AtRPN10) (26S proteasome regulatory subunit S5A homolog) (Multiubiquitin chain-binding protein 1) (AtMCB1) DISRUPTION PHENOTYPE: Displays reduced seed germination, growth rate, stamen number, genetic transmission through the male gamete, hormone-induced cell division and increased oxidative stress tolerance. Is also more sensitive to abscisic acid (ABA), salt, sucrose stress, heat shock and DNA-damaging agents and shows a decreased sensitivity to cytokinin and auxin. In flowers, epidermal cells in petals were larger than those in the wild type. {ECO:0000269|PubMed:12671091, ECO:0000269|PubMed:17971041, ECO:0000269|PubMed:19321709, ECO:0000269|PubMed:20059542, ECO:0000269|PubMed:21764993, ECO:0000269|PubMed:22751321}. The rpn10-1 mutant has elevated levels of ubiquitin conjugates but the RPN(1-186):ARP(exon2):NPTII protein is still detected in a 26S proteasome-enriched fraction. This mutant has a reduced germination rate several growth abnormalities increased rosette leaf senescence a reduction in stamen number increased sensitivity to DNA damaging agents decreased sensitivity to cytokinin and increased sensitivity to abscisic acid sucrose and salt.,The rpn10-1 mutant has defects in ubiquitin-mediated proteolysis via the 26S proteasome rendering it more sensitive to misfolded proteins that are degraded in a 26S-proteasome / Ub-dependent manner. However it has increased levels of the 20S core particle of the proteasome and exhibits reduced sensitivity to oxidative stress presumably since oxidatively damaged proteins can be degraded in a 20S proteasome-dependent but 26S proteasome /Ub-independent manner. The mutation confers the same phenotypes in Col that were described in the C24 background. Very low germination rate; Slow growth; Chlorotic leaves; Decreased stamen number; Reduced fertility; Early rosette leaf senescence-R. Vierstra-2003 FUNCTION: Plays a role in maintaining the structural integrity of the 19S regulatory particle (RP), subcomplex of the 26S proteasome. Plays a major role in both the direct and indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a potential docking subunit for both ubiquitin receptors RAD23s and DSK2s. Plays a role in the growth and development via the proteasome-dependent degradation of the ABA-signaling protein ABI5/DPBF1. Plays an important role for balancing cell expansion with cell proliferation rates during shoot development. {ECO:0000269|PubMed:12671091, ECO:0000269|PubMed:17971041, ECO:0000269|PubMed:19321709, ECO:0000269|PubMed:20059542, ECO:0000269|PubMed:21764993, ECO:0000269|PubMed:22751321, ECO:0000269|PubMed:8530351, ECO:0000269|PubMed:8570648, ECO:0000269|PubMed:9442033, ECO:0000269|PubMed:9741626}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 40757 26S proteasome non-ATPase regulatory subunit 4 homolog (26S proteasome regulatory subunit RPN10) (AtRPN10) (26S proteasome regulatory subunit S5A homolog) (Multiubiquitin chain-binding protein 1) (AtMCB1) cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; peptide receptor activity [GO:0001653]; polyubiquitin modification-dependent protein binding [GO:0031593]; cellular response to DNA damage stimulus [GO:0006974]; leaf development [GO:0048366]; leaf senescence [GO:0010150]; pollen development [GO:0009555]; post-embryonic root development [GO:0048528]; proteasome assembly [GO:0043248]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; response to heat [GO:0009408]; response to misfolded protein [GO:0051788]; response to salt stress [GO:0009651]; response to sucrose [GO:0009744]; root hair elongation [GO:0048767]; stamen formation [GO:0048455] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2121269; AT4G38630 26S proteasome non-atpase regulatory subunit 26S proteasome regulatory particle (26S proteasome regulatory particle non-ATPase subunit10) (Os03g0243300 protein) (OsS5a) (Ubiquitin interaction motif family protein, expressed) (cDNA clone:J033046D23, full insert sequence),Os10g0141400 protein (Fragment) O82143,A0A0P0XRM8 O82143_ORYSJ,A0A0P0XRM8_ORYSJ OsRPN10 LOC_Os03g13970 Os03g0243300 OsJ_10104 OSNPB_030243300,Os10g0141400 OSNPB_100141400 ENOG411DWBE PPDK O23404 PPDK1_ARATH Pyruvate, phosphate dikinase 1, chloroplastic (EC 2.7.9.1) (Pyruvate, orthophosphate dikinase 1) FUNCTION: Formation of phosphoenolpyruvate. May be involved in regulating the flux of carbon into starch and fatty acids of seeds and in the remobilization of nitrogen reserves in senescing leaves. {ECO:0000269|PubMed:15272878, ECO:0000269|PubMed:16915520, ECO:0000269|PubMed:21414960, ECO:0000269|PubMed:21883547}. MISCELLANEOUS: The reaction takes place in three steps, mediated by a phosphocarrier histidine residue located on the surface of the central domain. The two first partial reactions are catalyzed at an active site located on the N-terminal domain, and the third partial reaction is catalyzed at an active site located on the C-terminal domain. For catalytic turnover, the central domain swivels from the concave surface of the N-terminal domain to that of the C-terminal domain. {ECO:0000250|UniProtKB:P11155}. ARA:AT4G15530-MONOMER; 2.7.11.32; Carbon fixation in photosynthetic organisms (00710),Microbial metabolism in diverse environments (01120),Pyruvate metabolism (00620),Metabolic pathways (01100) 2.7.9.1 105138 Pyruvate, phosphate dikinase 1, chloroplastic (EC 2.7.9.1) (Pyruvate, orthophosphate dikinase 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; metal ion binding [GO:0046872]; pyruvate, phosphate dikinase activity [GO:0050242]; photosynthesis [GO:0015979]; pyruvate metabolic process [GO:0006090] DEVELOPMENTAL STAGE: Both isoforms 1 and 2 increase up to 7 days after sowing, but then decline. {ECO:0000269|PubMed:16915520}. TISSUE SPECIFICITY: Isoform 1 is expressed in leaves, flowers and siliques. Isoform 2 is found in cotyledons, rosette and cauline leaves, petioles, flowers and siliques. {ECO:0000269|PubMed:16915520}. locus:2130324; AT4G15530 pyruvate phosphate dikinase Pyruvate, phosphate dikinase 1, chloroplastic (EC 2.7.9.1) (OsPPDKB) (Pyruvate, orthophosphate dikinase 1) Q6AVA8 PPDK1_ORYSJ PPDK1 CPDK1 PPDKB Os05g0405000 LOC_Os05g33570 OJ1174_H11.5 OsJ_017742 DISRUPTION PHENOTYPE: Plants have a floury-white endosperm. {ECO:0000269|PubMed:15941402}. FUNCTION: Formation of phosphoenolpyruvate. The cytoplasmic isoform supports the biosynthetic processes in the nascent endosperm and provides an efficient mechanism for glycolytic ATP synthesis in oxygen depleted tissues. May be involved in regulating the flux of carbon into starch and fatty acids of seeds and in the remobilization of nitrogen reserves in senescing leaves. {ECO:0000269|PubMed:15941402, ECO:0000269|PubMed:16596412, ECO:0000269|PubMed:9278162}. MISCELLANEOUS: The reaction takes place in three steps, mediated by a phosphocarrier histidine residue located on the surface of the central domain. The two first partial reactions are catalyzed at an active site located on the N-terminal domain, and the third partial reaction is catalyzed at an active site located on the C-terminal domain. For catalytic turnover, the central domain swivels from the concave surface of the N-terminal domain to that of the C-terminal domain (By similarity). {ECO:0000250}.; MISCELLANEOUS: A second gene codes only for the short cytoplasmic isoform of PPDK. ENOG411DWBD CYP94C1 Q9ZUX1 C94C1_ARATH Cytochrome P450 94C1 (EC 1.14.-.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants accumulate high amounts of 12COOH-JA-Ile in response to wounding. {ECO:0000269|PubMed:22215670}. FUNCTION: Involved in the oxidation of the plant hormone jasmonoyl-L-isoleucine (JA-Ile), a bioactive phytohormone of the jasmonate-mediated signaling pathway. Converts 12-hydroxy-JA-Ile (12OH-JA-Ile) to the carboxy-derivative 12COOH-JA-Ile (PubMed:17868380, PubMed:22215670, PubMed:26164240). Exerts negative feedback control on JA-Ile levels and plays a role in attenuation of jasmonate responses (PubMed:22215670). Functions also as in-chain fatty acids hydroxylase in vitro (PubMed:17868380). Catalyzes the hydroxylation of 12-hydroxy-jasmonoyl-L-phenylalanine (12OH-JA-Phe) in vitro. Converts 12OH-JA-Phe to the carboxy-derivative 12COOH-JA-Phe (PubMed:26164240). {ECO:0000269|PubMed:17868380, ECO:0000269|PubMed:22215670, ECO:0000269|PubMed:26164240}. MetaCyc:AT2G27690-MONOMER; 1.14.-.- 56569 Cytochrome P450 94C1 (EC 1.14.-.-) integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; alkane 1-monooxygenase activity [GO:0018685]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; response to wounding [GO:0009611] locus:2042108; AT2G27690 cytochrome P450 Os05g0445100 protein,Cytochrome P450 (Cytochrome P450 family protein, expressed) (Os11g0151400 protein),Cytochrome P450 family protein, expressed (Os12g0150200 protein) (cDNA clone:002-105-H01, full insert sequence),Os05g0445100 protein (Putative cytochrome P450) (cDNA clone:001-115-D01, full insert sequence),Os01g0858350 protein (Putative cytochrome P450-dependent fatty acid hydroxylase) (cDNA clone:006-207-H02, full insert sequence) B9FPV1,Q53PZ7,Q2QXN4,Q65WU0,Q94DD8 B9FPV1_ORYSJ,Q53PZ7_ORYSJ,Q2QXN4_ORYSJ,Q65WU0_ORYSJ,Q94DD8_ORYSJ Os05g0445100 OsJ_18720 OSNPB_050445100,Os11g0151400 LOC_Os11g05380 Os11g0151400 OSNPB_110151400,Os12g0150200 LOC_Os12g05440 OSNPB_120150200,Os05g0445100 Os05g0445100 OSNPB_050445100 P0615D12.3,Os01g0858350 OsJ_04135 OSNPB_010858350 P0683F02.21 ENOG411DWBG SIRB Q84JH7,A0A1P8AWW0,A0A1P8AWY5 SIRB_ARATH,A0A1P8AWW0_ARATH,A0A1P8AWY5_ARATH Sirohydrochlorin ferrochelatase, chloroplastic (AtSirB) (EC 4.99.1.4),Sirohydrochlorin ferrochelatase B DISRUPTION PHENOTYPE: Post-germination growth arrest. {ECO:0000269|PubMed:22414210}. FUNCTION: Chelates iron to the siroheme precursor. Catalyzes the last step of the siroheme biosynthesis. Unlike its counterparts in bacteria, contains an [Fe-S] cluster which is not involved directly in the enzymatic reaction, but may play regulatory role in iron, sulfur and tetrapyrrole metabolism (PubMed:15545265, PubMed:22414210). The [Fe-S] cluster is required for normal plant growth (PubMed:22414210). {ECO:0000269|PubMed:15545265, ECO:0000269|PubMed:22414210}. PATHWAY: Porphyrin-containing compound metabolism; siroheme biosynthesis; siroheme from sirohydrochlorin: step 1/1. {ECO:0000305}. 4.99.1.4 24925,24014,24104 Sirohydrochlorin ferrochelatase, chloroplastic (AtSirB) (EC 4.99.1.4),Sirohydrochlorin ferrochelatase B chloroplast [GO:0009507]; 4 iron, 4 sulfur cluster binding [GO:0051539]; identical protein binding [GO:0042802]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; sirohydrochlorin cobaltochelatase activity [GO:0016852]; sirohydrochlorin ferrochelatase activity [GO:0051266]; cobalamin biosynthetic process [GO:0009236]; response to oxidative stress [GO:0006979]; siroheme biosynthetic process [GO:0019354],sirohydrochlorin cobaltochelatase activity [GO:0016852]; cobalamin biosynthetic process [GO:0009236] locus:2011987; AT1G50170 sirohydrochlorin Os02g0296800 protein (cDNA clone:J013000E01, full insert sequence) Q0E1W5 Q0E1W5_ORYSJ Os02g0296800 Os02g0296800 OSNPB_020296800 ENOG411DWBF SRS8,SHI,SRS1 F4KH89,Q9XGX0,Q9SD40,A0A1P8BC69,A0A1P8BC81,F4KH88 SRS8_ARATH,SHI_ARATH,SRS1_ARATH,A0A1P8BC69_ARATH,A0A1P8BC81_ARATH,F4KH88_ARATH Protein SHI RELATED SEQUENCE 8,Protein SHORT INTERNODES,Protein SHI RELATED SEQUENCE 1 (Protein STYLISH 1),Lateral root primordium (LRP) protein-like protein,SHI-related sequence 8 DISRUPTION PHENOTYPE: High gibberellin (GA) levels associated with dwarfism, short hypocotyl, narrow leaves, reduced apical dominance, and late flowering, but more flowers. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.,DISRUPTION PHENOTYPE: Gynoecia with aberrant style morphology. The double mutant sty1-1 and sty2-1 has a reduction in the amount of stylar and stigmatic tissues and decreased proliferation of stylar xylem, as well as shorter siliques and rosette and cauline leaves with a higher degree of serration. Hypersensitive to 1-N-naphthylphtalamic acid (NPA), but restored by exogenous application of auxin. {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. Seeds unable to germinate without application of exogenous GA.,No visible phenotype.,When grown under long day mutant plants were essentially the same as wild type plants except showing some morphological aberrations restricted to the apical part of the gynoecium. Mature styles exhibited slight depression and were generally wider that in the wild type. Style epidermal cells were found at the edges of the stigma where stigmatic papillae were formed in the WT. Papillae tent to sprawl in all directions. The outer replum is broader in mutant gynoecia. Uppermost portion of the siliques was narrowed as a result of aborted uppermost ovules in the siliques.,The gynoecial defects of ett-1 mutants such as reduction in ovary size and increased gynophore elongation were enhanced by the sty1-1 mutation. A number of double mutant gynoecia were nearly completely valveless and in those ovules grew on top of a placental surface. In addition the apical ends of sty1-1 ett-1 gynoecia were less fused than those of ett-1 and sty1-1 and ovules frequently protruded at the apex. The amount of stylar and stigmatic tissues was reduced compared with ett-1 and the double mutant was sterile. As in ett-1 gynoecia ectopic tissue of transmitting tract identity was generally present.,enhanced phenotype of pin1-5 single mutant the valves of mutant gyneoecia were reduced and often fused along one of the margins. Abnormal style morphology; Slightly reduced fertility-E. Sundberg-2002 FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.,FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.,FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. 19543,35377,38352,35454,34801,11737 Protein SHI RELATED SEQUENCE 8,Protein SHORT INTERNODES,Protein SHI RELATED SEQUENCE 1 (Protein STYLISH 1),Lateral root primordium (LRP) protein-like protein,SHI-related sequence 8 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; gibberellic acid mediated signaling pathway [GO:0009740]; multicellular organism development [GO:0007275]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein heterodimerization activity [GO:0046982]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; positive regulation of transcription, DNA-templated [GO:0045893] DEVELOPMENTAL STAGE: In germinating seeds, first detected at about 48 h after imbibition. In young seedlings grown in continuous light, present in the root/shoot transition zone, in the apex, and in the apical region of the cotyledons. Later observed in lateral root primordia and in emerging lateral roots, particularly in the root tips, as well as in the shoot apex and in the new leaves, especially in the apical and lateral hydathodes. In adult plants, accumulates in lateral root tips, lateral root primordia, and axillary shoot primordia. In flowers, expressed in the style and stigmatic surface of the pistil and in the receptacle (base) of the flower throughout the development of the pistil until anthesis and later in the silique. Fades out after fertilization. {ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.,DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. Detected throughout the youngest flower primordium. Later relocalizes towards the regions of the presumptive sepal anlagen and remains in sepal primordia until just after their emergence. Also observed on the abaxial side of the young floral meristem. Present in the newly arisen gynoecial primordium. Restricted to the apical parts of the carpels as the open-ended gynoecial cylinder elongates vertically. In the apical regions of the gynoecium, confined to a zone in the interphase between the style and the stigma and fades out later. Within the gynoecium, accumulates in ovule primordia, and, as the ovules developed, restricted to the epidermis of the developing funiculi, to the outer, but not the inner, integuments and to the tip of the nucellus. Also present in the cell layer of the septum that faces the ovary. In the embryo, detected in the cotyledon primordia during late globular to mid heart stage. In addition, transiently expressed in petal and stamen primordia and in the tapetum of the anthers. {ECO:0000269|PubMed:12361963}. TISSUE SPECIFICITY: Expressed in young organs such as shoot apices and root tips. Present in roots, stems, flowers, leaves, hydathodes and siliques. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176}.,TISSUE SPECIFICITY: Expressed in flowers, seeds and seedlings. {ECO:0000269|PubMed:12361963}. locus:2183078;,locus:2155021;,locus:2080818; AT5G33210,AT5G66350,AT3G51060 Domain of unknown function (DUF702) Os06g0712600 protein (Putative LRP1) Q5Z5Y2 Q5Z5Y2_ORYSJ Os06g0712600 OJ1663_H12.30 OSNPB_060712600 P0712G01.5 ENOG411EHTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ribosomal protein L.2 NA NA NA NA NA NA NA ENOG411EHTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DT4B MKP11.10 F4KGY0 F4KGY0_ARATH Alkaline-phosphatase-like family protein 104711 Alkaline-phosphatase-like family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mannose-ethanolamine phosphotransferase activity [GO:0051377]; GPI anchor biosynthetic process [GO:0006506] locus:2167245; AT5G17250 Type I phosphodiesterase / nucleotide pyrophosphatase Os10g0170300 protein (Phosphatidylinositolglycan class O, putative, expressed) Q33AP3 Q33AP3_ORYSJ LOC_Os10g08940 Os10g0170300 OsJ_30850 OSNPB_100170300 ENOG411DT4F FATA2,FATA Q9SV64,Q42561 FATA2_ARATH,FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic (EC 3.1.2.14) (18:0-acyl-carrier protein thioesterase) (18:0-ACP thioesterase) (Acyl-[acyl-carrier-protein] hydrolase),Oleoyl-acyl carrier protein thioesterase 1, chloroplastic (EC 3.1.2.14) (18:0-acyl-carrier protein thioesterase) (18:0-ACP thioesterase) (Acyl-[acyl-carrier-protein] hydrolase) FUNCTION: Plays an essential role in chain termination during de novo fatty acid synthesis. Possesses high thioesterase activity for oleoyl-ACP versus other acyl-ACPs. {ECO:0000269|PubMed:22002626}.,FUNCTION: Plays an essential role in chain termination during de novo fatty acid synthesis. Possesses high thioesterase activity for oleoyl-ACP versus other acyl-ACPs. Substrate preference is 18:1 > 18:0 > 16:1. {ECO:0000269|PubMed:12061798, ECO:0000269|PubMed:22002626}. ARA:AT4G13050-MONOMER;,ARA:AT3G25110-MONOMER;MetaCyc:AT3G25110-MONOMER; 3.1.2.14 42231,40819 Oleoyl-acyl carrier protein thioesterase 2, chloroplastic (EC 3.1.2.14) (18:0-acyl-carrier protein thioesterase) (18:0-ACP thioesterase) (Acyl-[acyl-carrier-protein] hydrolase),Oleoyl-acyl carrier protein thioesterase 1, chloroplastic (EC 3.1.2.14) (18:0-acyl-carrier protein thioesterase) (18:0-ACP thioesterase) (Acyl-[acyl-carrier-protein] hydrolase) chloroplast [GO:0009507]; myristoyl-[acyl-carrier-protein] hydrolase activity [GO:0016295]; oleoyl-[acyl-carrier-protein] hydrolase activity [GO:0004320]; palmitoyl-[acyl-carrier-protein] hydrolase activity [GO:0016296]; fatty acid biosynthetic process [GO:0006633],chloroplast [GO:0009507]; acyl-[acyl-carrier-protein] hydrolase activity [GO:0016297]; myristoyl-[acyl-carrier-protein] hydrolase activity [GO:0016295]; oleoyl-[acyl-carrier-protein] hydrolase activity [GO:0004320]; palmitoyl-[acyl-carrier-protein] hydrolase activity [GO:0016296]; fatty acid biosynthetic process [GO:0006633] locus:2123256;,locus:2090285; AT4G13050,AT3G25110 carrier protein thioesterase Acyl-[acyl-carrier-protein] hydrolase (EC 3.1.2.-) (Fragment) Q0J0M2 Q0J0M2_ORYSJ Os09g0505300 OSNPB_090505300 FUNCTION: Plays an essential role in chain termination during de novo fatty acid synthesis. {ECO:0000256|RuleBase:RU363096}. ENOG411DT4K IBR3 Q8RWZ3 IBR3_ARATH Probable acyl-CoA dehydrogenase IBR3 (EC 1.3.99.-) (Protein INDOLE-3-BUTYRIC ACID RESPONSE 3) DISRUPTION PHENOTYPE: Defective in root hair expansion (PubMed:20562230). Mutant plants are resistant to the inhibitory effect of intermediate levels of indole-3-butyric acid (IBA) and 2,4-DB on root elongation (PubMed:17277896, PubMed:18725356). {ECO:0000269|PubMed:17277896, ECO:0000269|PubMed:18725356, ECO:0000269|PubMed:20562230}. Roots moderately resistant to elongation inhibition by 24-DB (24-Dichlorophenoxybutyric acid) but remained sensitive to inhibition by 24-D (24-Dichlorophenoxyacetic acid). Fewer lateral roots are produced without induction which becomes more pronounced in response to IBA (Indole-3-butyric acid) treatment. Insensitive to IBA; Resistant to 2, 4-DB-B. Bartel-2007 FUNCTION: Involved with IBR1 and IBR10 in the peroxisomal beta-oxidation of indole-3-butyric acid (IBA) to form indole-3-acetic acid (IAA), a biologically active auxin (PubMed:20562230). May be responsible for catalyzing the first step in IBA-CoA beta-oxidation (PubMed:17277896). May play a role in defense response to pathogenic bacteria (PubMed:23906045). {ECO:0000269|PubMed:17277896, ECO:0000269|PubMed:20562230, ECO:0000269|PubMed:23906045}. MISCELLANEOUS: Plants over-expressing IBR3 exhibit enhanced susceptibility to the bacterial pathogen P.syringae pv. tomato strain DC3000. {ECO:0000269|PubMed:23906045}. ARA:AT3G06810-MONOMER; R-ATH-77289; 1.3.99.- 91713 Probable acyl-CoA dehydrogenase IBR3 (EC 1.3.99.-) (Protein INDOLE-3-BUTYRIC ACID RESPONSE 3) peroxisome [GO:0005777]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539]; root hair elongation [GO:0048767] locus:2083328; AT3G06810 acyl-CoA dehydrogenase Os07g0675000 protein (Putative acyl-CoA dehydrogenase) (cDNA clone:J033044B11, full insert sequence),Os07g0675000 protein (Fragment) Q6ZDX3,A0A0P0XA30,A0A0P0XAC9 Q6ZDX3_ORYSJ,A0A0P0XA30_ORYSJ,A0A0P0XAC9_ORYSJ P0618H09.20-1 P0037D09.22-1 Os07g0675000 OSNPB_070675000,Os07g0675000 OSNPB_070675000 ENOG411E7NU Q9LYF4 Q9LYF4_ARATH AT5g11760/T22P22_150 (Stress response protein) (Uncharacterized protein T22P22_150) 20766 AT5g11760/T22P22_150 (Stress response protein) (Uncharacterized protein T22P22_150) locus:2181875; AT5G11760 Eukaryotic protein of unknown function (DUF1764) NA NA NA NA NA NA NA ENOG411DT41 RH52,RH11,RH37 Q9M2F9,Q8LA13,Q84W89 RH52_ARATH,RH11_ARATH,RH37_ARATH DEAD-box ATP-dependent RNA helicase 52 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 11 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 37 (EC 3.6.4.13) R-ATH-6798695; 3.6.4.13 69242,66026,67626 DEAD-box ATP-dependent RNA helicase 52 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 11 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 37 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; RNA secondary structure unwinding [GO:0010501],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; RNA secondary structure unwinding [GO:0010501],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2076436;,locus:2076351;,locus:2041549; AT3G58570,AT3G58510,AT2G42520 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 52B (EC 3.6.4.13) (OsPL10b),DEAD-box ATP-dependent RNA helicase 37 (EC 3.6.4.13) (OsPL10a),DEAD-box ATP-dependent RNA helicase 52A (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 52C (EC 3.6.4.13),Os06g0602400 protein (Fragment),Os07g0202100 protein (Fragment) Q6Z4K6,Q75HJ0,Q0DB53,Q2R1M8,A0A0P0WYT0,A0A0P0X3B5 RH52B_ORYSJ,RH37_ORYSJ,RH52A_ORYSJ,RH52C_ORYSJ,A0A0P0WYT0_ORYSJ,A0A0P0X3B5_ORYSJ PL10B Os07g0202100 LOC_Os07g10250 OsJ_23477 OSJNBa0081K20.14,PL10A Os03g0805200 LOC_Os03g59050 OsJ_13017 OSJNBb0015I02.14,Os06g0602400 LOC_Os06g40020 P0486H12.18,Os11g0599500 LOC_Os11g38670,Os06g0602400 OSNPB_060602400,Os07g0202100 OSNPB_070202100 ENOG411EJY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleolar protein 12 (25kDa) NA NA NA NA NA NA NA ENOG411EJY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-patch domain NA NA NA NA NA NA NA ENOG411EJY0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dehydrin NA NA NA NA NA NA NA ENOG411EJYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pre-rRNA-processing protein TSR2 NA NA NA NA NA NA NA ENOG411EJYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJYD A0A1P8B721,A0A1P8AV76,A0A1P8AV47,F4JVM4,F4I793 A0A1P8B721_ARATH,A0A1P8AV76_ARATH,A0A1P8AV47_ARATH,F4JVM4_ARATH,F4I793_ARATH Dentin sialophosphoprotein-like protein,Dentin sialophosphoprotein 67722,28901,16796,79827,44035 Dentin sialophosphoprotein-like protein,Dentin sialophosphoprotein locus:2121514;,locus:2205528; AT4G20720,AT1G05090 NA NA NA NA NA NA NA NA ENOG411EJYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA copper chaperone NA NA NA NA NA NA NA ENOG411EJYB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mitochondrial ribosomal protein S6 NA NA NA NA NA NA NA ENOG411EJYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like NA NA NA NA NA NA NA ENOG411EJYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJYW O64778,Q9SY95,O64774,O64771,A0A1P8AS04,A0A1P8ARZ8,A0A1P8AS39,F4HVB3 Y1142_ARATH,Y1155_ARATH,Y1146_ARATH,Y1148_ARATH,A0A1P8AS04_ARATH,A0A1P8ARZ8_ARATH,A0A1P8AS39_ARATH,F4HVB3_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61420 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61550 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61480 (EC 2.7.11.1),S-locus lectin protein kinase family protein,ATP binding / protein kinase 2.7.11.1 90406,89398,84086,90741,90592,74220,74034,23439 G-type lectin S-receptor-like serine/threonine-protein kinase At1g61420 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61550 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61480 (EC 2.7.11.1),S-locus lectin protein kinase family protein,ATP binding / protein kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468] locus:2197744;,locus:2200923;,locus:2197709;,locus:4515102699; AT1G61420,AT1G61550,AT1G61460,AT1G61480,AT1G61475 G-type lectin S-receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EJYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411EJYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised ACR YagE family COG1723 NA NA NA NA NA NA NA ENOG411EJYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EJYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Arsenic ( 3 oxidation state) methyltransferase NA NA NA NA NA NA NA ENOG411EJYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EJYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUC153 domain NA NA NA NA NA NA NA ENOG411EJYZ XTH3 Q9LJR7 XTH3_ARATH Xyloglucan endotransglucosylase/hydrolase protein 3 (At-XTH3) (XTH-3) (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. ARA:AT3G25050-MONOMER; 2.4.1.207 33259 Xyloglucan endotransglucosylase/hydrolase protein 3 (At-XTH3) (XTH-3) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall organization [GO:0071555]; photoperiodism, flowering [GO:0048573]; plant-type cell wall biogenesis [GO:0009832]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Predominantly expressed in flower buds. {ECO:0000269|PubMed:11673616}. locus:2086959; AT3G25050 Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411EJYX DTX1 Q9SIA5 DTX1_ARATH Protein DETOXIFICATION 1 (AtDTX1) (Multidrug and toxic compound extrusion protein 1) (MATE protein 1) FUNCTION: Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux. {ECO:0000269|PubMed:11739388}. R-ATH-425366; 51845 Protein DETOXIFICATION 1 (AtDTX1) (Multidrug and toxic compound extrusion protein 1) (MATE protein 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; cadmium ion transport [GO:0015691]; sequestering of metal ion [GO:0051238] TISSUE SPECIFICITY: Ubiquitous. Highest expression in flowers and stems. {ECO:0000269|PubMed:11739388}. locus:2050190; AT2G04040 MatE NA NA NA NA NA NA NA ENOG411EJYY APRR9,PRR9 Q8L500,A0A1P8B243,C0SV91,A0A1P8B286,F4IJA1 APRR9_ARATH,A0A1P8B243_ARATH,C0SV91_ARATH,A0A1P8B286_ARATH,F4IJA1_ARATH Two-component response regulator-like APRR9 (Pseudo-response regulator 9),Pseudo-response regulator 9,CCT motif family protein (Uncharacterized protein At2g46670) (Fragment) Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is increased compared to wild type and the cotyledon area is smaller.,double mutant shows dramatic and more than additive period lengthening in the light and becomes arrhythmic in constant darkness. Fails both to maintain an oscillation after entrainment to thermocycles and to reset its clock in response to cold pulses. Long hypocotyl and small cotyledons under red light-P. Quail-2006 FUNCTION: Transcriptional repressor of CCA1 and LHY, and positive regulator of LWD1 and LWD2 expression. Controls photoperiodic flowering response and temperature compensation. Involved in the positive and negative feedback loops of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. Regulated at the transcriptional level by a corepressor complex consisting of ELF4, ELF3, and LUX. APRR9, APRR7, and APRR5 coordinately act on the upstream region of the target genes to repress their expression from noon until midnight. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. {ECO:0000269|PubMed:11100772, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:21098730, ECO:0000269|PubMed:21357491, ECO:0000269|PubMed:23027938}. MISCELLANEOUS: Regulated at the level of mRNA maturation and alternative splicing by SKIP (PubMed:22942380) and PRMT5 (PubMed:20962777). The expression of APRR9, APRR7, and APRR5 requires the presence of LWD1 and/or LWD2, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491). {ECO:0000305|PubMed:20962777, ECO:0000305|PubMed:21357491, ECO:0000305|PubMed:22942380}. 52565,34681,20539,49707,39479 Two-component response regulator-like APRR9 (Pseudo-response regulator 9),Pseudo-response regulator 9,CCT motif family protein (Uncharacterized protein At2g46670) (Fragment) nucleus [GO:0005634]; DNA binding [GO:0003677]; circadian rhythm [GO:0007623]; negative regulation of transcription, DNA-templated [GO:0045892]; phosphorelay signal transduction system [GO:0000160]; red or far-red light signaling pathway [GO:0010017]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634],nucleus [GO:0005634]; regulation of flower development [GO:0009909]; response to light stimulus [GO:0009416],intracellular [GO:0005622]; phosphorelay signal transduction system [GO:0000160],nucleus [GO:0005634]; phosphorelay signal transduction system [GO:0000160] locus:2044376;,locus:2062749; AT2G46790 CCT motif NA NA NA NA NA NA NA ENOG411ECRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411ECR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cationic peroxidase NA NA NA NA NA NA NA ENOG411E56Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E56T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor MADS-box transcription factor 17 (NMADS3) (OsMADS17) (RMADS213),MADS17 (Os04g0580700 protein) (cDNA clone:J023057B01, full insert sequence) Q7XUN2,Q0JAS4 MAD17_ORYSJ,Q0JAS4_ORYSJ MADS17 Os04g0580700 LOC_Os04g49150 OSJNBa0064M23.11,Os04g0580700 MADS17 Os04g0580700 OSNPB_040580700 DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy with MADS6. {ECO:0000269|PubMed:19820190}. FUNCTION: Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. ENOG411E56U SHW1 F4I3V6,A0A1P8ATK8 SHW1_ARATH,A0A1P8ATK8_ARATH Protein SHORT HYPOCOTYL IN WHITE LIGHT 1,Short hypocotyl in white light1 DISRUPTION PHENOTYPE: Short hypocotyl in dark with drastic reduction in apical hook curvature. Enhanced inhibition in hypocotyl elongation in white light (WL), especially at lower fluence rates (PubMed:18375596, PubMed:26474641). Delayed flowering under long-day conditions (PubMed:18375596). Reduced lateral roots formation (PubMed:18375596, PubMed:26474641). Reduced chlorophyll accumulation and expression of light-regulated genes. Increase in the anthocyanin level in the dark (PubMed:18375596). Reduced sensitivity to abscisic acid (ABA) leading to impaired ABA-mediated reduction of seed germination (PubMed:19704523, PubMed:26474641). The double mutant shw1 phyB exhibits a strongly reduced hypocotyl length in WL (PubMed:19704523). The double mutant shw1 cop1 displays an enhanced photomorphogenic growth in the darkness as well as abnormal accumulation of HY5 (PubMed:26474641, PubMed:18375596). The double mutant shw1 hy5 has altered root growth, hypocotyl length and hook angle similar to the single mutant shw1 in the darkness and far red light (FR), but shorter hypocotyl in WL, red light (RL) and blue light (BL). In addition, shw1 hy5 is recued for gravitropic root growth defect observed in hy5 single mutant (PubMed:26474641). {ECO:0000269|PubMed:18375596, ECO:0000269|PubMed:19704523, ECO:0000269|PubMed:26474641}. Dark grown seedlings have shorter hypocotyls and reduced apical hook curvature. In white light mutants have shorter hypocotyls indicating an enhanced inhibition of hypocotyl elongation. Late flowering in long days. Reduced chlorophyll accumulation. Late flowering; Short hypocotyl under continuous light and in the dark-S. Chattopadhyay-2008 FUNCTION: Negative regulator of photomorphogenesis modulating both light and abscisic acid (ABA) signaling pathways (PubMed:19704523, PubMed:18375596, PubMed:26474641). Regulates negatively the light-mediated inhibition of hypocotyl elongation, probably in a PHYB-mediated signaling pathway, but promotes flowering time (especially in long days) and lateral root formation (PubMed:18375596, PubMed:19704523). Enhances light-regulated gene expression (PubMed:18375596). Promotes COP1-mediated degradation of HY5 during seedling development (e.g. hypocotyl growth) through enhanced ubiquitination in the darkness. Also involved in root gravitropism (PubMed:26474641, PubMed:18375596). {ECO:0000269|PubMed:18375596, ECO:0000269|PubMed:19704523, ECO:0000269|PubMed:26474641}. 21367,17880 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1,Short hypocotyl in white light1 integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; nucleus [GO:0005634]; abscisic acid-activated signaling pathway [GO:0009738]; flower development [GO:0009908]; negative regulation of photomorphogenesis [GO:0010100]; positive gravitropism [GO:0009958]; positive regulation of lateral root development [GO:1901333]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of chlorophyll biosynthetic process [GO:0010380]; regulation of red or far-red light signaling pathway [GO:0090227]; response to light intensity [GO:0009642]; response to light stimulus [GO:0009416] DEVELOPMENTAL STAGE: In seedlings, expressed in hypocotyl and cotyledons up to the fifth day after germination. Levels decrease gradually in hypocotyl to become undetectable in 8 days old seedlings. In cotyledons, repartition becomes later patchy. In adult plants, observed in green tissues, with a gradual decrease during aging leading to patchy distribution. Also detected in seeds still partly green but disapear in dry seeds. {ECO:0000269|PubMed:18375596}. TISSUE SPECIFICITY: Expressed in young seedlings (e.g. hypocotyl and cotyledons) and in green tissues (e.g. leaves, stems, sepals, and young siliques). {ECO:0000269|PubMed:18375596}. locus:505006215; AT1G69935 NA NA NA NA NA NA NA NA ENOG411E56V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E56P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ DnaJ domain containing protein (Os03g0837700 protein),Os03g0837400 protein,Os10g0188200 protein Q851M4,A3API4,A0A0P0XSP1 Q851M4_ORYSJ,A3API4_ORYSJ,A0A0P0XSP1_ORYSJ OSJNBa0042I09.20 LOC_Os03g62150 Os03g0837700 OSNPB_030837700,Os03g0837400 OsJ_13284 OSNPB_030837400,Os10g0188200 OSNPB_100188200 ENOG411E56S TPD1,TDL1 Q6TLJ2,Q1G3T1 TPD1_ARATH,TDL1_ARATH Protein TAPETUM DETERMINANT 1,TPD1 protein homolog 1 (TPD1-like protein 1) (AtTDL1) DISRUPTION PHENOTYPE: Male-sterile phenotype due to the absence of tapetum. Presence of extra microsporocytes in the developing anthers (PubMed:14615601). No effect on cell wall degradation during microsporocyte formation (PubMed:23893118). {ECO:0000269|PubMed:14615601, ECO:0000269|PubMed:23893118}. Male sterile mutant; anthers lack tapetal cells and have an increased number of microsporocytes. No tetrads were formed and mature anthers in mutant flowers contained no pollen. The middle layer was thicker than in the wild type and remained abnormal; at the final stage of anther development became highly vacuolated.,similar to tpd1-1 Completely male sterile due to anther defects-D. Ye-2003 FUNCTION: Involved in cell specification during anther and pollen development. Required for the differentiation, specialization and persistence of tapetal cells in the anthers (PubMed:14615601, PubMed:16055681). May serve as an extracellular ligand for the EMS1 receptor kinase to signal cell fate determination during plant sexual reproduction (PubMed:18250314). {ECO:0000269|PubMed:14615601, ECO:0000269|PubMed:16055681, ECO:0000269|PubMed:18250314}. 19457,19885 Protein TAPETUM DETERMINANT 1,TPD1 protein homolog 1 (TPD1-like protein 1) (AtTDL1) anther development [GO:0048653]; cell fate determination [GO:0001709],response to heat [GO:0009408] DEVELOPMENTAL STAGE: Expressed in flower buds at development stage 2 in archesporial cells, in primary sporogenous cells and primary parietal cells at stage 3, and in secondary parietal cells at early stage 4. In microsporocytes, expression increases at stage 5 and at late stage 5, expressed predominantly in both tapetum and microsporocytes. Expression in tapetum and microsporocytes is reduced greatly at stage 6 and then declined gradually to be not detectable at stage 10. {ECO:0000269|PubMed:14615601}. TISSUE SPECIFICITY: Expressed in leaves, young seedlings, inflorescence meristems, floral meristems, carpel primordia and ovule primordia. {ECO:0000269|PubMed:14615601}. locus:1006230300;,locus:1009023131; AT4G24972,AT1G32583 NA TPD1 protein homolog 1B (TPD1-like protein 1B) (OsTDL1B),TPD1 protein homolog 1A (Protein MICROSPORELESS 2) (TPD1-like protein 1A) (OsTDL1A) Q8S6P9,Q2QR54 TDL1B_ORYSJ,TDL1A_ORYSJ TDL1B Os10g0207500 LOC_Os10g14020 OJ1004_F02.2 OsJ_31024,TDL1A MIL2 Os12g0472500 LOC_Os12g28750 DISRUPTION PHENOTYPE: Male-sterile phenotype due to the absence of tapetal cells in the developing anthers. {ECO:0000269|PubMed:22913653}. FUNCTION: May play a role during anther development. {ECO:0000250|UniProtKB:Q2QR54}.,FUNCTION: Involved in cell specification during anther development. Required for the differentiation of primary parietal cells into secondary parietal cells in anthers (PubMed:22913653). May serve as an extracellular ligand for the MSP1 receptor kinase to limit sporocyte number in ovules (PubMed:18248596). {ECO:0000269|PubMed:18248596, ECO:0000269|PubMed:22913653}. ENOG411E56N BHLH75 A4D998 BH075_ARATH Transcription factor bHLH75 (Basic helix-loop-helix protein 75) (AtbHLH75) (bHLH 75) (Transcription factor EN 78) (bHLH transcription factor bHLH075) 25209 Transcription factor bHLH75 (Basic helix-loop-helix protein 75) (AtbHLH75) (bHLH 75) (Transcription factor EN 78) (bHLH transcription factor bHLH075) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of brassinosteroid biosynthetic process [GO:2000488]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2032990; AT1G25330 Transcription factor NA NA NA NA NA NA NA ENOG411E56H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Os08g0119700 protein A0A0P0XB35 A0A0P0XB35_ORYSJ Os08g0119700 OSNPB_080119700 ENOG411E56I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os07g0175000 protein A0A0N7KN05 A0A0N7KN05_ORYSJ Os07g0175000 OSNPB_070175000 ENOG411E56J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E56D O22919 O22919_ARATH 6,7-dimethyl-8-ribityllumazine synthase (Uncharacterized protein At2g30230) 19842 6,7-dimethyl-8-ribityllumazine synthase (Uncharacterized protein At2g30230) locus:2060859; AT2G30230 expressed protein Os05g0165200 protein Q6F2T0 Q6F2T0_ORYSJ OSJNBa0027N19.12 Os05g0165200 OSNPB_050165200 ENOG411E56G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os05g0497200 protein (cDNA, clone: J080064G22, full insert sequence) Q75K84 Q75K84_ORYSJ Os05g0497200 Os05g0497200 OJ1118_C04.8 OsJ_19060 OSNPB_050497200 ENOG411E56A MHM17.20 Q7X6A8,Q9LTR7,Q9SZI0,F4KAI3 Q7X6A8_ARATH,Q9LTR7_ARATH,Q9SZI0_ARATH,F4KAI3_ARATH 60S ribosomal L18a-like protein (Uncharacterized protein At5g57060),60S ribosomal L18a-like protein,At4g26060 (Ribosomal protein L18ae family) (Uncharacterized protein AT4g26060) (Uncharacterized protein F20B18.170) 15843,16804,14883,12798 60S ribosomal L18a-like protein (Uncharacterized protein At5g57060),60S ribosomal L18a-like protein,At4g26060 (Ribosomal protein L18ae family) (Uncharacterized protein AT4g26060) (Uncharacterized protein F20B18.170) integral component of membrane [GO:0016021]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytolysis [GO:0019835]; defense response to Gram-negative bacterium [GO:0050829]; translation [GO:0006412],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2164620;,locus:2120840; AT5G57060,AT4G26060 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E56C TCP15 Q9C9L2 TCP15_ARATH Transcription factor TCP15 34753 Transcription factor TCP15 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin homeostasis [GO:0010252]; cell proliferation [GO:0008283]; circadian rhythm [GO:0007623]; DNA endoreduplication [GO:0042023]; gynoecium development [GO:0048467]; inflorescence development [GO:0010229]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. locus:2205065; AT1G69690 TCP family transcription factor NA NA NA NA NA NA NA ENOG411E568 TOM2B Q8H960 TOM2B_ARATH Tobamovirus multiplication protein 2B (AtTOM2B) DISRUPTION PHENOTYPE: Reduced efficiency of intracellular multiplication of tobamoviruses (e.g. crucifer strain TMV-Cg). {ECO:0000269|PubMed:12514139, ECO:0000269|PubMed:9568044}. FUNCTION: Necessary for the efficient intracellular multiplication of tobamoviruses. {ECO:0000269|PubMed:12514139, ECO:0000269|PubMed:9568044}. 12795 Tobamovirus multiplication protein 2B (AtTOM2B) viral replication complex formation and maintenance [GO:0046786] locus:2033781; AT1G32370 NA Os02g0279600 protein (Putative tobamovirus multiplication protein 2B) Q6ET30 Q6ET30_ORYSJ Os02g0279600 OsJ_06249 OSNPB_020279600 P0444A09.25 ENOG411E569 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0928400 protein Q5JK41 Q5JK41_ORYSJ Os01g0928400 Os01g0928400 OSJNBa0052O12.9 OSNPB_010928400 ENOG411E564 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) Os08g0531900 protein A0A0P0XI85 A0A0P0XI85_ORYSJ Os08g0531900 OSNPB_080531900 ENOG411E566 MQD22.20 Q9FGQ9,Q8VZM9 Q9FGQ9_ARATH,Q8VZM9_ARATH Uncharacterized protein,Senescence-associated family protein (DUF581) (Uncharacterized protein At4g17670) 20382,18593 Uncharacterized protein,Senescence-associated family protein (DUF581) (Uncharacterized protein At4g17670) locus:2171047;,locus:2129331; AT5G47060,AT4G17670 Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E567 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain NA NA NA NA NA NA NA ENOG411E560 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Transcription factor ILI3 (OsILI3) (Basic helix-loop-helix protein 153) (OsbHLH153) (Protein INCREASED LEAF INCLINATION 3) (bHLH transcription factor bHLH153),BHLH family protein, putative, expressed (Os10g0403800 protein) Q10R47,Q8LNC7 ILI3_ORYSJ,Q8LNC7_ORYSJ ILI3 BHLH153 Os03g0171700 LOC_Os03g07540 OsJ_09590,Os10g0403800 LOC_Os10g26410 OsJ_31454 OSJNBa0044A10.22 OSNPB_100403800 FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. ENOG411E561 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ocs element-binding factor BZIP transcription factor (Os05g0129300 protein) (Putative bZIP protein) (cDNA clone:001-042-G08, full insert sequence) (cDNA clone:001-102-F02, full insert sequence) (cDNA clone:J013002D17, full insert sequence) Q688Q7 Q688Q7_ORYSJ Os05g0129300 Os05g0129300 OsJ_16993 OSJNBa0056I11.13 OSNPB_050129300 ENOG411E562 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chloroplast small heat shock protein class I NA NA NA NA NA NA NA ENOG411E563 STR17 F4IPI4,A0A1P8B1H4,A0A1P8B1H1 STR17_ARATH,A0A1P8B1H4_ARATH,A0A1P8B1H1_ARATH Rhodanese-like domain-containing protein 17 (Sulfurtransferase 17) (AtStr17),Rhodanese/Cell cycle control phosphatase superfamily protein 17945,14854,21815 Rhodanese-like domain-containing protein 17 (Sulfurtransferase 17) (AtStr17),Rhodanese/Cell cycle control phosphatase superfamily protein locus:2827795; AT2G17850 Rhodanese-like domain Os04g0249600 protein,Os04g0249600 protein (Fragment) B9FE35,Q0JEL3 B9FE35_ORYSJ,Q0JEL3_ORYSJ Os04g0249600 OsJ_14035 OSNPB_040249600,Os04g0249600 Os04g0249600 OSNPB_040249600 ENOG411EM6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM6P SEC Q9M8Y0,A0A178VFL2 SEC_ARATH,A0A178VFL2_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC (EC 2.4.1.-) (Protein SECRET AGENT),Tetratricopeptide repeat (TPR)-like superfamily protein Sensitive to paclobutrazol (GA biosynthesis inhibitor)-N. Olszewski -2002 FUNCTION: O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. {ECO:0000269|PubMed:16014901}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.255; 2.4.1.- 110114,83889 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC (EC 2.4.1.-) (Protein SECRET AGENT),Tetratricopeptide repeat (TPR)-like superfamily protein transferase activity, transferring glycosyl groups [GO:0016757]; multicellular organism development [GO:0007275]; protein O-linked glycosylation [GO:0006493] locus:2103025; AT3G04240 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase Os02g0489550 protein A0A0P0VJ70 A0A0P0VJ70_ORYSJ Os02g0489550 OSNPB_020489550 ENOG411EM6Q SPY Q96301,F4J7C7 SPY_ARATH,F4J7C7_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-),Tetratricopeptide repeat (TPR)-like superfamily protein most extreme allele; resemble wild-type plants that have been repeatedly treated with G.A.; erect rosette leaves light green color early flowering and parthenocarpy; stem elongation is increased caused primarily by an increase in internode length; early stem elongation is so rapid that flower buds occasionally remain wrapped in the yet unfolded cauline leaves resulting in bending of the main stem; partial male sterility (greatly reduced when plants grown at 18C); altered gibberellin signal transduction resistant to the gibberellin (G.A.) biosynthesis inhibitor paclobutrazol; long hypocotyl due to HY2 allele.,resemble wild-type plants that have been repeatedly treated with G.A.; long hypocotyls erect rosette leaves light green color early flowering and parthenocarpy; seedlings defective in cotyledon number and phyllotaxy; stem elongation is increased caused primarily by an increase in the ,Mutant flowers are glabrous.,resemble wild-type plants that have been repeatedly treated with G.A.; long hypocotyls erect rosette leaves light green color early flowering and parthenocarpy; stem elongation is increased caused primarily by an increase in the number of nodes; partial male sterility (greatly reduced at 18C) altered gibberellin signal transduction and resistant to the gibberellin (G.A.) biosynthesis inhibitor paclobutrazol.,early flowering; usually light green; somewhat curled leaves; bent siliques; reduced fertility.,In LD-grown double mutant plants bolted at a similar time to WT controls. In SDs they bolted 10 days later than WT plants but much earlier than ctr1-1 single-mutant plants.,Trichome production on the rosette leaves of double mutants was similar to that of spy-3 and wild-type plants although abaxial trichomes appeared slightly later on rosette leaves as in gis seedlings that were established on GA-containing medium. Double mutants had stem trichomes that were mostly three-branched as in the gis mutants.,The trichome production is most similar to that of the gis2 mutant on branches and cauline leaves but glabrous flowers are produced . Long hypocotyl; Pale green; Tall inflorescence stems; Reduced fertility; Siliques form without fertilization; Early flowering; Resistant to paclobutrazol (inhibitor of GA synthesis)-N. Olszewski-1996 FUNCTION: Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo. {ECO:0000269|PubMed:11457967, ECO:0000269|PubMed:12136030, ECO:0000269|PubMed:15155885, ECO:0000269|PubMed:15608330, ECO:0000269|PubMed:8799194}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.255; 2.4.1.- 101430,81054 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-),Tetratricopeptide repeat (TPR)-like superfamily protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein N-acetylglucosaminyltransferase activity [GO:0016262]; cell differentiation [GO:0030154]; cytokinin-activated signaling pathway [GO:0009736]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; protein glycosylation [GO:0006486]; regulation of reactive oxygen species metabolic process [GO:2000377]; rhythmic process [GO:0048511] DEVELOPMENTAL STAGE: Detected in all organs of the plant and at all stages of the life cycle. Detected 1 day after germination in the radicle just before its emergence from the seed. At 2.5 and 3 days after germination, expression in the young seedling is highest in the cotyledons and the root tip. At 3, 4 and 5 days, expression is also detectable in the hypocotyl. At 10 days of age, expression in the first pair of true leaves is reduced relative to the rest of the seedling. 2 days later, this difference disappears and the expression level is again fairly similar throughout the aboveground portion of the plant, with a higher intensity in the vegetative apex. This developmental regulation is not detected in leaves developing at later nodes. Older plants also display uniform expression throughout the vegetative organs, but this expression is less intense. In older seedlings, expression is observed throughout the root, particularly at the tip of the primary root and in lateral roots. Expression is also observed in trichomes and senescing leaves, and in inflorescence internodes, flowers. Expression is observed in the seeds and carpels of fully elongated siliques. Lower expression is also observed in expanding siliques and in the developing seeds in these siliques. Expression is also detected in the embryo of maturing seeds (after the disappearance of the endosperm) (at protein level). {ECO:0000269|PubMed:12068105}. TISSUE SPECIFICITY: Widely expressed. Present throughout the plant (at protein level). {ECO:0000269|PubMed:12068105}. locus:2080722; AT3G11540 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.255) Q6YZI0 SPY_ORYSJ SPY Os08g0559300 LOC_Os08g44510 P0562A06.20 FUNCTION: Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). {ECO:0000250}. ENOG411EM6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA small nuclear ribonucleoprotein-associated protein Os07g0166600 protein (Fragment) A0A0P0X2T0 A0A0P0X2T0_ORYSJ Os07g0166600 OSNPB_070166600 ENOG411EM6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ty1-copia subclass Os05g0442550 protein A0A0P0WMW9 A0A0P0WMW9_ORYSJ Os05g0442550 OSNPB_050442550 ENOG411EM6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Mariner sub-class Os06g0523701 protein (Fragment) A0A0P0WXA3 A0A0P0WXA3_ORYSJ Os06g0523701 OSNPB_060523701 ENOG411EM6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class NA NA NA NA NA NA NA ENOG411EM6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os01g0915400 protein (Fragment) A0A0P0VBZ2 A0A0P0VBZ2_ORYSJ Os01g0915400 OSNPB_010915400 ENOG411EM64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ty1-copia subclass NA NA NA NA NA NA NA ENOG411EM66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon Os12g0292200 protein,Os11g0248732 protein A0A0P0Y982,A0A0N7KSQ0 A0A0P0Y982_ORYSJ,A0A0N7KSQ0_ORYSJ Os12g0292200 OSNPB_120292200,Os11g0248732 OSNPB_110248732 ENOG411EM67 ; P93293,P92512 M300_ARATH,M710_ARATH Uncharacterized mitochondrial protein AtMg00300 (ORF1451) (ORF145a),Uncharacterized mitochondrial protein AtMg00710 (ORF120) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07736) is not demonstrated. 16352,13474 Uncharacterized mitochondrial protein AtMg00300 (ORF1451) (ORF145a),Uncharacterized mitochondrial protein AtMg00710 (ORF120) mitochondrion [GO:0005739],mitochondrion [GO:0005739]; nucleic acid binding [GO:0003676] locus:504954513;,locus:504954554; AT2G07736ATMG00300;,ATMG00710 Retrotransposon protein NA NA NA NA NA NA NA ENOG411EM62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EM68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411DRBP TPP2 F4JVN6 TPPII_ARATH Tripeptidyl-peptidase 2 (EC 3.4.14.10) (Tripeptidyl-peptidase II) (TPPII) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:15908606}. FUNCTION: Serine protease of the proteasome pathway that may function with the 20S proteasome to degrade oxidized proteins generated by environmental stress. {ECO:0000269|PubMed:15908606, ECO:0000269|PubMed:19822524}. R-ATH-983168; 3.4.14.10 152368 Tripeptidyl-peptidase 2 (EC 3.4.14.10) (Tripeptidyl-peptidase II) (TPPII) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; aminopeptidase activity [GO:0004177]; serine-type endopeptidase activity [GO:0004252]; tripeptidyl-peptidase activity [GO:0008240]; proteolysis [GO:0006508] locus:2133039; AT4G20850 Tripeptidyl-peptidase Tripeptidyl-peptidase 2 (EC 3.4.14.10) (Tripeptidyl-peptidase II) (TPPII),Os02g0664300 protein (Fragment) Q6ESI7,A0A0N7KFU2,A0A0P0VML9 TPPII_ORYSJ,A0A0N7KFU2_ORYSJ,A0A0P0VML9_ORYSJ TPP2 Os02g0664300 LOC_Os02g44520 P0461B08.4-1 P0461B08.4-2,Os02g0664300 OSNPB_020664300 FUNCTION: Serine protease that may function in the proteasome pathway. {ECO:0000250}. ENOG411DRBQ Q9CAL6,F4I5G3 Q9CAL6_ARATH,F4I5G3_ARATH OBP32pep, putative (DUF220) (Uncharacterized protein At1g70480) (Uncharacterized protein At1g70480; F24J13.5) (Uncharacterized protein F24J13.5),OBP32pep, putative (DUF220) 36339,38438 OBP32pep, putative (DUF220) (Uncharacterized protein At1g70480) (Uncharacterized protein At1g70480; F24J13.5) (Uncharacterized protein F24J13.5),OBP32pep, putative (DUF220) locus:2026856; AT1G70480 Domain of unknown function DUF220 Os09g0327550 protein A0A0P0XKL1 A0A0P0XKL1_ORYSJ Os09g0327550 OSNPB_090327550 ENOG411DRBR PAE8 Q6DBP4,A0A1P8B645,A0A1P8B651 PAE8_ARATH,A0A1P8B645_ARATH,A0A1P8B651_ARATH Pectin acetylesterase 8 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) DISRUPTION PHENOTYPE: Reduced inflorescence stem growth and increased levels of acetate in rosette leaves. {ECO:0000269|PubMed:25115560}. FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000269|PubMed:25115560}.,FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. 3.1.1.- 44439,33501,48499 Pectin acetylesterase 8 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] locus:2140436; AT4G19420 protein notum homolog Pectin acetylesterase (EC 3.1.1.-) Q6YVK6 Q6YVK6_ORYSJ Os02g0702400 Os02g0702400 OJ1218_D07.12 OsJ_08062 OSNPB_020702400 P0724B10.1 FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. ENOG411DRBS RABA5B,RABA5E,RABA5D,RABA5A,RABA5C Q9SRS5,P19892,Q9SIP0,Q9FGK5,P28187,A0A1P8AVC8 RAA5B_ARATH,RAA5E_ARATH,RAA5D_ARATH,RAA5A_ARATH,RAA5C_ARATH,A0A1P8AVC8_ARATH Ras-related protein RABA5b (AtRABA5b),Ras-related protein RABA5e (AtRABA5e) (Ras-related protein Ara-1),Ras-related protein RABA5d (AtRABA5d),Ras-related protein RABA5a (AtRABA5a),Ras-related protein RABA5c (AtRABA5c) (Ras-related protein Ara-4) (Ras-related protein Rab11F) (AtRab11F),Rab GTPase-like A5A protein FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}.,FUNCTION: Intracellular vesicle trafficking and protein transport. Binds GTP and GDP and possesses intrinsic GTPase activity. {ECO:0000269|PubMed:8013629}. Endocytosis (04144),Pancreatic secretion (04972),Vasopressin-regulated water reabsorption (04962),Endocrine and other factor-regulated calcium reabsorption (04961) 24320,24210,24361,24445,23981,29187 Ras-related protein RABA5b (AtRABA5b),Ras-related protein RABA5e (AtRABA5e) (Ras-related protein Ara-1),Ras-related protein RABA5d (AtRABA5d),Ras-related protein RABA5a (AtRABA5a),Ras-related protein RABA5c (AtRABA5c) (Ras-related protein Ara-4) (Ras-related protein Rab11F) (AtRab11F),Rab GTPase-like A5A protein plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],cytosol [GO:0005829]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],cytosol [GO:0005829]; Golgi membrane [GO:0000139]; Golgi stack [GO:0005795]; Golgi-associated vesicle [GO:0005798]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; inter-Golgi cisterna vesicle-mediated transport [GO:0048219]; response to heat [GO:0009408],GTP binding [GO:0005525]; GTPase activity [GO:0003924] TISSUE SPECIFICITY: Expressed in roots and actively dividing cells. {ECO:0000269|PubMed:11532937}. locus:2079631;,locus:2065858;,locus:2169053;,locus:2041036; AT3G07410,AT1G05810,AT2G31680,AT5G47520,AT2G43130 ras-related protein Os08g0525000 protein (Putative GTP-binding protein(RAB11G)) (cDNA clone:J033122O18, full insert sequence),Os07g0634200 protein (Putative Rab GTP-binding protein Rab11a) (cDNA clone:J033094O19, full insert sequence) Q84QW0,Q8LHP5 Q84QW0_ORYSJ,Q8LHP5_ORYSJ OJ1191_A10.113 Os08g0525000 OSNPB_080525000,P0455H11.113 Os07g0634200 OSNPB_070634200 ENOG411DRBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os05g0177000 protein,Os05g0177400 protein,Os05g0177100 protein (Fragment),Os05g0175800 protein Q6AT20,A0A0P0WIL0,A0A0P0WIW2,A0A0N7KK85 Q6AT20_ORYSJ,A0A0P0WIL0_ORYSJ,A0A0P0WIW2_ORYSJ,A0A0N7KK85_ORYSJ Os05g0177000 Os05g0177000 OsJ_17317 OSJNBa0029B02.9 OSNPB_050177000,Os05g0177400 OSNPB_050177400,Os05g0177100 OSNPB_050177100,Os05g0175800 OSNPB_050175800 ENOG411DRBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal peptide peptidase Signal peptide peptidase-like 3 (OsSPPL3) (EC 3.4.23.-) Q5N808 SIPL3_ORYSJ SPPL3 Os01g0914700 LOC_Os01g68620 OsJ_04526 P0004D12.11 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. {ECO:0000250}. ENOG411DRBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY DNA -binding domain Os01g0821600 protein (WRKY transcription factor 21) (WRKY transcription factor 48-like protein) Q8RV01 Q8RV01_ORYSJ WRKY21 Os01g0821600 OSNPB_010821600 P0485B12.13 P0703B11.22 ENOG411DRBW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA polymerase kappa Os10g0350800 protein (Fragment) A0A0P0XT23 A0A0P0XT23_ORYSJ Os10g0350800 OSNPB_100350800 ENOG411DRBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: helix-loop-helix DNA-binding domain containing protein Os03g0205300 protein A0A0N7KGS8 A0A0N7KGS8_ORYSJ Os03g0205300 OSNPB_030205300 ENOG411DRBY Q84W22,A0A1P8BH97,F4KIL1 Q84W22_ARATH,A0A1P8BH97_ARATH,F4KIL1_ARATH Protein kinase superfamily protein (Uncharacterized protein At5g24970),Protein kinase superfamily protein ARA:GQT-512-MONOMER; 81196,81494,85865 Protein kinase superfamily protein (Uncharacterized protein At5g24970),Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2149393; AT5G24970 ABC1 family Os07g0459200 protein (Putative ubiquinone biosynthesis protein ubiB),Os07g0459200 protein Q7EY94,C7J4H8 Q7EY94_ORYSJ,C7J4H8_ORYSJ OSJNBa0040K22.112-1 Os07g0459200 OsJ_24137 OSNPB_070459200,Os07g0459200 Os07g0459200 OSNPB_070459200 ENOG411DRBZ A0A1P8AMS8,Q8RWN4 A0A1P8AMS8_ARATH,Q8RWN4_ARATH HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase,Cytosolic IMP-GMP specific 5-nucleotidase, putative (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase) ARA:AT1G75210-MONOMER; 62535,74314 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase,Cytosolic IMP-GMP specific 5-nucleotidase, putative (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase) hydrolase activity [GO:0016787]; metal ion binding [GO:0046872],5'-nucleotidase activity [GO:0008253]; metal ion binding [GO:0046872] locus:2025142; AT1G75210 Cytosolic purine HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed (Os03g0774300 protein) (Putative N5'-nucleotidase),Os03g0774300 protein (Fragment),Os12g0180600 protein Q7XZV8,A0A0P0W4A2,A0A0P0Y7Q4,A0A0P0W3N2 Q7XZV8_ORYSJ,A0A0P0W4A2_ORYSJ,A0A0P0Y7Q4_ORYSJ,A0A0P0W3N2_ORYSJ Os03g0774300 LOC_Os03g56310 OSJNBb0094O03.19 OSNPB_030774300,Os03g0774300 OSNPB_030774300,Os12g0180600 OSNPB_120180600 ENOG411DRBA Q8GXW8,Q9M840 Q8GXW8_ARATH,Q9M840_ARATH Ankyrin repeat family protein (Uncharacterized protein At1g04780/F13M7_20),Ankyrin repeat family protein (T27C4.12 protein) 74360,71501 Ankyrin repeat family protein (Uncharacterized protein At1g04780/F13M7_20),Ankyrin repeat family protein (T27C4.12 protein) cytoplasm [GO:0005737]; plasma membrane [GO:0005886] locus:2010597;,locus:2100900; AT1G04780,AT3G04470 Ankyrin Repeat Os07g0436100 protein (cDNA, clone: J100075L13, full insert sequence),Ankyrin repeat protein-like (Os02g0810100 protein) B7FAI8,Q6KA74 B7FAI8_ORYSJ,Q6KA74_ORYSJ Os07g0436100 OSNPB_070436100,OJ1112_G06.34 Os02g0810100 OSNPB_020810100 ENOG411DRBB CESA2,CESA9 O48947,Q9SJ22 CESA2_ARATH,CESA9_ARATH Cellulose synthase A catalytic subunit 2 [UDP-forming] (AtCesA2) (Ath-A) (EC 2.4.1.12),Probable cellulose synthase A catalytic subunit 9 [UDP-forming] (AtCesA9) (EC 2.4.1.12) DISRUPTION PHENOTYPE: Plants display reduced cellulose synthesis affecting microtubule orientation, general cell size, hypocotyl growth and seeds production. Partially redundant with CESA6. {ECO:0000269|PubMed:17085513}. The cesa2/cesa6 double mutant has reduced hypocotyl length in the dark reduced root length in the light strong dwarf and bushy.,The double mutant seedlings had significantly shorter and swollen roots. The plants had stunted growth and reduced size.,the triple mutant pollen grains are severely deformed the pollen cell walls are unevenly deposited. The mutant pollen is not fertile. Short hypocotyl; Reduced fertility-Q. Xie-2007 FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation. {ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:17085513, ECO:0000269|PubMed:17878303}.,FUNCTION: Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250}. PATHWAY: Glycan metabolism; plant cellulose biosynthesis. ARA:AT4G39350-MONOMER;,ARA:AT2G21770-MONOMER; 2.4.1.12 122069,123447 Cellulose synthase A catalytic subunit 2 [UDP-forming] (AtCesA2) (Ath-A) (EC 2.4.1.12),Probable cellulose synthase A catalytic subunit 9 [UDP-forming] (AtCesA9) (EC 2.4.1.12) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type primary cell wall biogenesis [GO:0009833]; seed coat development [GO:0010214] DEVELOPMENTAL STAGE: Expressed throughout the embryo during all steps of embryogenesis, and decrease toward the bent-cotyledon stage. {ECO:0000269|PubMed:12481071}.,DEVELOPMENTAL STAGE: Mostly expressed in cotyledons during all steps of embryogenesis, and decrease toward the bent-cotyledon stage. {ECO:0000269|PubMed:12481071}. TISSUE SPECIFICITY: Strongly and ubiquitously expressed. Localized in some dividing and expanding cells, as well as in vascular tissues. {ECO:0000269|PubMed:11517344, ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12481071, ECO:0000269|PubMed:17085513}.,TISSUE SPECIFICITY: Expressed in young plants, stems and flowers. {ECO:0000269|PubMed:12481071}. locus:2136308;,locus:2052576; AT4G39350,AT2G21770 cellulose synthase A catalytic subunit NA NA NA NA NA NA NA ENOG411DRBC A8MRY9,A0A1P8AXP5,F4JU87 NSTU3_ARATH,A0A1P8AXP5_ARATH,F4JU87_ARATH Nucleotide-sugar uncharacterized transporter 3,UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter,Nucleotide/sugar transporter family protein R-ATH-173599;R-ATH-2022854;R-ATH-2022928;R-ATH-727802; 37640,38737,39429 Nucleotide-sugar uncharacterized transporter 3,UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter,Nucleotide/sugar transporter family protein integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; pyrimidine nucleotide-sugar transmembrane transporter activity [GO:0015165]; carbohydrate transport [GO:0008643] locus:4010713922; AT4G32272 UDP-sugar transporter Os02g0614100 protein (Putative UDP-N-acetylglucosamine transporter) (cDNA clone:J013089M04, full insert sequence) Q6K5Y4 Q6K5Y4_ORYSJ Os02g0614100 Os02g0614100 OJ2055_H10.17 OsJ_07515 OSNPB_020614100 ENOG411DRBE PYRE-F Q42586 UMPS_ARATH Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (OPRTase) (EC 2.4.2.10); Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMPdecase)] PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2. ARA:AT3G54470-MONOMER;MetaCyc:AT3G54470-MONOMER; R-ATH-500753; 2.4.2.10; 4.1.1.23 51850 Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (OPRTase) (EC 2.4.2.10); Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMPdecase)] cytosol [GO:0005829]; orotate phosphoribosyltransferase activity [GO:0004588]; orotidine-5'-phosphate decarboxylase activity [GO:0004590]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; 'de novo' UMP biosynthetic process [GO:0044205]; cellular response to phosphate starvation [GO:0016036]; response to cadmium ion [GO:0046686] locus:504955714; AT3G54470 uridine 5-monophosphate Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (OPRTase) (EC 2.4.2.10); Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMPdecase)],Os01g0951400 protein (Fragment) Q8RZA1,Q9LDN2,A0A0P0VCV1 UMPS2_ORYSJ,UMPS1_ORYSJ,A0A0P0VCV1_ORYSJ UMPS2 Os01g0951400 LOC_Os01g72250 B1147A04.39,UMPS1 Os01g0951200 LOC_Os01g72240 B1147A04.37 OsJ_04774,Os01g0951400 OSNPB_010951400 ENOG411DRBF LPPB Q9SUW4 LPPB_ARATH Probable lipid phosphate phosphatase beta (AtLPPB) (EC 3.1.3.-) (Phosphatidic acid phosphatase beta) ARA:GQT-1635-MONOMER; R-ATH-191273; 3.1.3.4; 3.1.3.- 23388 Probable lipid phosphate phosphatase beta (AtLPPB) (EC 3.1.3.-) (Phosphatidic acid phosphatase beta) integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2127575; AT4G22550 acidPPc Os02g0661800 protein (Putative PnFL-1) (cDNA clone:J013163P22, full insert sequence) Q6H6M1 Q6H6M1_ORYSJ Os02g0661800 OsJ_07825 OSNPB_020661800 P0516F12.16 ENOG411DRBG P42339 PI3K_ARATH Phosphatidylinositol 3-kinase VPS34 (EC 2.7.1.137) (PI3-kinase VPS34) (AtVPS34) (PI3K VPS34) (PtdIns-3-kinase VSP34) Mutants showed reduced endocytosis and little ROS production upon exposure to salt stress. Bleaching became visible in the mutant plants after 4–5 days and most plants were dead after 7 days after mutants were transferred to plates containing 150 mM NaCl.,Similar to wild type siblings. Normal root hair length. Segregates 1:1 for wt:het offspring as mutation affects the male gametophyte and is not transmitted.,Adult plant morphologically normal. Reduced transmission through male gametophyte. More than half of pollen grains are defective having abnormal vacuolar development. Pollen germination and pollen tube growth is also affected. Complete male gametophyte defective-Y. Lee-2008 ARA:AT1G60490-MONOMER; R-ATH-1632852;R-ATH-1660514;R-ATH-1660516;R-ATH-1660517;R-ATH-5668599; 2.7.1.137; 2.7.1.137 93328 Phosphatidylinositol 3-kinase VPS34 (EC 2.7.1.137) (PI3-kinase VPS34) (AtVPS34) (PI3K VPS34) (PtdIns-3-kinase VSP34) endosome [GO:0005768]; peroxisome [GO:0005777]; phosphatidylinositol 3-kinase complex, class III, type I [GO:0034271]; phosphatidylinositol 3-kinase complex, class III, type II [GO:0034272]; pre-autophagosomal structure [GO:0000407]; 1-phosphatidylinositol-3-kinase activity [GO:0016303]; ATP binding [GO:0005524]; autophagosome assembly [GO:0000045]; endocytosis [GO:0006897]; endosomal transport [GO:0016197]; microgametogenesis [GO:0055046]; pexophagy [GO:0030242]; phosphatidylinositol-mediated signaling [GO:0048015]; protein phosphorylation [GO:0006468]; reactive oxygen species metabolic process [GO:0072593]; response to salt stress [GO:0009651] locus:2036546; AT1G60490 Phosphatidylinositol 3-kinase Os05g0180600 protein (Putative phosphatidylinositol 3-kinase),Os05g0180600 protein (Fragment) Q5KQK1,A0A0P0WIJ9 Q5KQK1_ORYSJ,A0A0P0WIJ9_ORYSJ Os05g0180600 OsJ_17344 OSNPB_050180600 P0453H11.6,Os05g0180600 OSNPB_050180600 ENOG411DRBH IPMS1,IPMS2,IMS1 Q9LPR4,Q9C550,A0A1P8AV04,A0A1P8AUZ8 LEU11_ARATH,LEU12_ARATH,A0A1P8AV04_ARATH,A0A1P8AUZ8_ARATH 2-isopropylmalate synthase 1, chloroplastic (EC 2.3.3.13) (Methylthioalkylmalate synthase-like 4),2-isopropylmalate synthase 2, chloroplastic (EC 2.3.3.13) (2-isopropylmalate synthase 1) (Methylthioalkylmalate synthase-like 3),2-isopropylmalate synthase 1 DISRUPTION PHENOTYPE: Plants show an increased Val content but no changes in Leu content. {ECO:0000269|PubMed:17189332}.,DISRUPTION PHENOTYPE: Plants do not show any changes in soluble amino acid content. {ECO:0000269|PubMed:17189332}. IPMS1 mutants grew somewhat slower and had undulated leaves that tended to be slightly chlorotic. Showed an increase in the content of the aliphatic amino acid Val. Slow growth; Undulated, chlorotic leaves-J. Gershenzon-2007 FUNCTION: Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate). Involved in Leu biosynthesis, but do not participate in the chain elongation of glucosinolates. {ECO:0000269|PubMed:15155874, ECO:0000269|PubMed:17189332}. PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 1/4. 2.3.3.13; 2.3.3.13 68676,68136,52484,59962 2-isopropylmalate synthase 1, chloroplastic (EC 2.3.3.13) (Methylthioalkylmalate synthase-like 4),2-isopropylmalate synthase 2, chloroplastic (EC 2.3.3.13) (2-isopropylmalate synthase 1) (Methylthioalkylmalate synthase-like 3),2-isopropylmalate synthase 1 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 2-isopropylmalate synthase activity [GO:0003852]; leucine biosynthetic process [GO:0009098],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; 2-isopropylmalate synthase activity [GO:0003852]; lyase activity [GO:0016829]; leucine biosynthetic process [GO:0009098],transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [GO:0046912]; carboxylic acid metabolic process [GO:0019752],2-isopropylmalate synthase activity [GO:0003852]; leucine biosynthetic process [GO:0009098] DEVELOPMENTAL STAGE: Induced in seeds during silique ripening. {ECO:0000269|PubMed:17189332}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17189332}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12432038, ECO:0000269|PubMed:17189332}. locus:2014179;,locus:2031586; AT1G18500,AT1G74040 2-isopropylmalate synthase 2-isopropylmalate synthase B, putative, expressed (Os12g0138900 protein),2-isopropylmalate synthase B, putative, expressed (Os11g0142500 protein),Os12g0589898 protein Q2QXY9,Q2RAP8,A0A0P0YCF4 Q2QXY9_ORYSJ,Q2RAP8_ORYSJ,A0A0P0YCF4_ORYSJ Os12g0138900 LOC_Os12g04440 Os12g0138900 OsJ_35174 OSNPB_120138900,Os11g0142500 LOC_Os11g04670 OsJ_32925 OSNPB_110142500,Os12g0589898 OSNPB_120589898 ENOG411DRBI MBK5.16,MAH20.13,MCD7.8 O65595,Q9FFP6,Q9FNN1,Q9FM97 KPYC_ARATH,Q9FFP6_ARATH,Q9FNN1_ARATH,Q9FM97_ARATH Probable pyruvate kinase, cytosolic isozyme (PK) (EC 2.7.1.40),Pyruvate kinase (EC 2.7.1.40) FUNCTION: Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation. {ECO:0000250|UniProtKB:Q2RAK2}. PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5.,PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5. {ECO:0000256|RuleBase:RU000504}. ARA:AT4G26390-MONOMER;,ARA:AT5G63680-MONOMER;,ARA:AT5G08570-MONOMER;,ARA:AT5G56350-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.40 54319,55018,54977,54411 Probable pyruvate kinase, cytosolic isozyme (PK) (EC 2.7.1.40),Pyruvate kinase (EC 2.7.1.40) cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096],cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686],cytoplasm [GO:0005737]; cytosol [GO:0005829]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096] locus:2131453;,locus:2160599;,locus:2159577;,locus:2161068; AT4G26390,AT5G63680,AT5G08570,AT5G56350 Pyruvate kinase Pyruvate kinase (EC 2.7.1.40),Pyruvate kinase (EC 2.7.1.40) (Fragment) Q0DS91,Q5NBQ0,Q7XKB5,A0A0P0V155,A0A0P0V0X7 Q0DS91_ORYSJ,Q5NBQ0_ORYSJ,Q7XKB5_ORYSJ,A0A0P0V155_ORYSJ,A0A0P0V0X7_ORYSJ Os03g0325000 OSNPB_030325000,Os01g0276700 OsJ_01290 OSNPB_010276700 P0038F12.25,Os04g0677500 OsJ_16627 OSJNBa0064G10.16 OSNPB_040677500,Os01g0276700 OSNPB_010276700 ENOG411DRBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0199100 protein) (cDNA clone:J013027L21, full insert sequence),NB-ARC domain containing protein (NB-ARC domain, putative) (Os11g0704100 protein),Os11g0479400 protein (Fragment),Os10g0394400 protein,Os05g0250700 protein,Os05g0250600 protein (Fragment),Os11g0479100 protein Q0IPH7,Q53NN7,A0A0P0Y2B6,A0A0P0XTQ5,A0A0P0WJR9,A0A0P0WK54,A0A0N7KSX4 Q0IPH7_ORYSJ,Q53NN7_ORYSJ,A0A0P0Y2B6_ORYSJ,A0A0P0XTQ5_ORYSJ,A0A0P0WJR9_ORYSJ,A0A0P0WK54_ORYSJ,A0A0N7KSX4_ORYSJ Os12g0199100 LOC_Os12g09739 Os12g0199100 OSNPB_120199100,Os11g0704100 LOC_Os11g47780 OSNPB_110704100,Os11g0479400 OSNPB_110479400,Os10g0394400 OSNPB_100394400,Os05g0250700 OSNPB_050250700,Os05g0250600 OSNPB_050250600,Os11g0479100 OSNPB_110479100 ENOG411DRBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0109400 protein (Fragment),Os05g0112700 protein,Os09g0120100 protein A0A0N7KK09,A0A0P0WH94,A0A0P0XJS1 A0A0N7KK09_ORYSJ,A0A0P0WH94_ORYSJ,A0A0P0XJS1_ORYSJ Os05g0109400 OSNPB_050109400,Os05g0112700 OSNPB_050112700,Os09g0120100 OSNPB_090120100 ENOG411DRBM F4J9G2 F4J9G2_ARATH Rhodanese/Cell cycle control phosphatase superfamily protein 73935 Rhodanese/Cell cycle control phosphatase superfamily protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; nucleus [GO:0005634] locus:2080442; AT3G59780 NA Os01g0896500 protein,Os01g0896500 protein (Fragment),Os05g0441750 protein Q0JGY3,A0A0P0VBM6,A0A0N7KKV2 Q0JGY3_ORYSJ,A0A0P0VBM6_ORYSJ,A0A0N7KKV2_ORYSJ Os01g0896500 Os01g0896500 OSNPB_010896500,Os01g0896500 OSNPB_010896500,Os05g0441750 OSNPB_050441750 ENOG411DRBN Q56XU4,A0A1P8AW26 C3H6_ARATH,A0A1P8AW26_ARATH Zinc finger CCCH domain-containing protein 6 (AtC3H6),Zinc finger C-x8-C-x5-C-x3-H type family protein 45127,45117 Zinc finger CCCH domain-containing protein 6 (AtC3H6),Zinc finger C-x8-C-x5-C-x3-H type family protein DNA binding [GO:0003677]; metal ion binding [GO:0046872],metal ion binding [GO:0046872] locus:2035434; AT1G19860 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 30 (OsC3H30),Os04g0663200 protein,Os04g0663200 protein (Fragment) Q7XM16,A0A0P0WFW2,A0A0P0WFY7 C3H30_ORYSJ,A0A0P0WFW2_ORYSJ,A0A0P0WFY7_ORYSJ Os04g0663200 LOC_Os04g56750 OsJ_015790 OSJNBa0084K01.15,Os04g0663200 OSNPB_040663200 ENOG411DRB0 P33207 FABG_ARATH 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase) PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT1G24360-MONOMER;MetaCyc:AT1G24360-MONOMER; Biotin metabolism (00780),Biosynthesis of unsaturated fatty acids (01040),Fatty acid biosynthesis (00061),Metabolic pathways (01100) 1.1.1.100 33548 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3-oxo-glutaryl-[acp] methyl ester reductase activity [GO:0102131]; 3-oxo-pimeloyl-[acp] methyl ester reductase activity [GO:0102132]; 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [GO:0004316]; copper ion binding [GO:0005507]; NAD binding [GO:0051287]; fatty acid biosynthetic process [GO:0006633] locus:2024021; AT1G24360 3-oxoacyl- acyl-carrier-protein reductase Os04g0376300 protein (Fragment),Os02g0503500 protein (cDNA, clone: J100063K09, full insert sequence) Q0JDU3,B7FAC8 Q0JDU3_ORYSJ,B7FAC8_ORYSJ Os04g0376300 Os04g0376300 OSNPB_040376300,Os02g0503500 OsJ_06836 OSNPB_020503500 ENOG411DRB1 CDKF-1 O80345 CDKF1_ARATH Cyclin-dependent kinase F-1 (CDKF;1) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 1-At) (CAK1-At) Rosette lethal; Slow growth; Small, wavy leaves with abnormal serration-M. Umeda-2009 FUNCTION: CDK-activating kinase that modulates CDKD-2 and CDKD-3 activities by phosphorylation of the T-loop. Activates CDKD-2 C-terminal domain (CTD) kinase activity. Activates CDKA-1 probably by phosphorylation. Posseses a CDK kinase activity independently of association with cyclin CYCH1-1. Phosphorylates the CTD of the large subunit of RNA polymerase II. {ECO:0000269|PubMed:12084729, ECO:0000269|PubMed:15486101, ECO:0000269|PubMed:16856985}. 2.7.11.22; 2.7.11.23 53752 Cyclin-dependent kinase F-1 (CDKF;1) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 1-At) (CAK1-At) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein serine/threonine kinase activity [GO:0004674]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; cell cycle [GO:0007049]; cell division [GO:0051301]; maintenance of root meristem identity [GO:0010078]; protein phosphorylation [GO:0006468]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] TISSUE SPECIFICITY: Highly expressed in suspension cell culture. Expressed at low levels in all plant organs. {ECO:0000269|PubMed:9560221}. locus:2119961; AT4G28980 Cyclin-dependent kinase Cyclin-dependent kinase F-1 (CDKF;1) (EC 2.7.11.22) (EC 2.7.11.23),Os06g0334400 protein (Fragment) Q5Z754,A0A0P0WWD2 CDKF1_ORYSJ,A0A0P0WWD2_ORYSJ CDKF-1 Os06g0334400 LOC_Os06g22820 OSJNBa0012F14.17,Os06g0334400 OSNPB_060334400 ENOG411DRB2 TAF5 Q6S7B0,A0A1P8BA79 TAF5_ARATH,A0A1P8BA79_ARATH Transcription initiation factor TFIID subunit 5 (TBP-associated factor 5) (AtTAF5),TBP-associated factor 5 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 74414,74112 Transcription initiation factor TFIID subunit 5 (TBP-associated factor 5) (AtTAF5),TBP-associated factor 5 nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2179300; AT5G25150 transcription initiation factor TFIID subunit Os06g0649500 protein (Putative TAF5),Os07g0205200 protein,Os07g0205200 protein (Fragment) Q67UR9,A0A0P0X3D9,A0A0P0X3L9 Q67UR9_ORYSJ,A0A0P0X3D9_ORYSJ,A0A0P0X3L9_ORYSJ Os06g0649500 Os06g0649500 OsJ_22170 OSJNBa0062J02.37 OSNPB_060649500 P0453H04.6,Os07g0205200 OSNPB_070205200 ENOG411DRB3 DCL1 Q9SP32,F4HQG6 DCL1_ARATH,F4HQG6_ARATH Endoribonuclease Dicer homolog 1 (EC 3.1.26.-) (Dicer-like protein 1) (AtDCL1) (Protein ABNORMAL SUSPENSOR 1) (Protein CARPEL FACTORY) (Protein SHORT INTEGUMENTS 1) (Protein SUSPENSOR 1),Dicer-like 1 DISRUPTION PHENOTYPE: Embryonic lethality in sus-1 mutant. Weaker mutant (caf-1) also exists. Mutant caf-1 produces extra whorls of stamens, indefinite number of carpels and show an absence of axillary inflorescence meristems and abnormally shaped leaves and floral organs. {ECO:0000269|PubMed:10556049, ECO:0000269|PubMed:12376646}. Increased abundance of miRNA precursors.,indeterminate floral meristems producing extra whorls of stamens and an indefinite number of carpels; unregulated cell division in the center of the flower with normal floral organ identity; plants also show other developmental defects including absence of axillary inflorescence meristems and abnormally shaped cotyledons leaves sepals stamens and carpels Null: Embryo defective; Globular; Abnormal suspensor; Knockdown 1: Female sterile due to short integuments; Knockdown 2: Increased carpel number-D. Meinke-2002 FUNCTION: Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of natural siRNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving 24 nucleotide nat-siRNAs into 21 nucleotide nat-siRNAs. Can produce RDR6-dependent endogenous ta-siRNAs derived from TAS1 and TAS2. Required for the production of 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). Acts redundantly with DICER-LIKE 3 (DCL3) to promote flowering via repression of FLOWERING LOCUS C (FLC). Represses antiviral RNA silencing through negative regulation of the expression of DCL4 and DCL3. {ECO:0000269|PubMed:15821876, ECO:0000269|PubMed:16040244, ECO:0000269|PubMed:16428603, ECO:0000269|PubMed:17579240, ECO:0000269|PubMed:18003861, ECO:0000269|PubMed:18632569, ECO:0000269|PubMed:18799732}. MISCELLANEOUS: Expression in the early embryo is from the maternally contributed genome. 3.1.26.- 213574,213673 Endoribonuclease Dicer homolog 1 (EC 3.1.26.-) (Dicer-like protein 1) (AtDCL1) (Protein ABNORMAL SUSPENSOR 1) (Protein CARPEL FACTORY) (Protein SHORT INTEGUMENTS 1) (Protein SUSPENSOR 1),Dicer-like 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; RISC complex [GO:0016442]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; gene silencing by RNA [GO:0031047]; RNA processing [GO:0006396]; rRNA catabolic process [GO:0016075],nuclear dicing body [GO:0010445]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; double-stranded RNA binding [GO:0003725]; ribonuclease III activity [GO:0004525]; cytokinesis by cell plate formation [GO:0000911]; embryonic pattern specification [GO:0009880]; flower development [GO:0009908]; mRNA cleavage involved in gene silencing by miRNA [GO:0035279]; primary miRNA processing [GO:0031053]; production of lsiRNA involved in RNA interference [GO:0010599]; production of ta-siRNAs involved in RNA interference [GO:0010267]; regulation of seed maturation [GO:2000034]; RNA processing [GO:0006396]; rRNA catabolic process [GO:0016075]; seed morphogenesis [GO:0048317]; vegetative to reproductive phase transition of meristem [GO:0010228]; virus induced gene silencing [GO:0009616] DEVELOPMENTAL STAGE: Detected in the embryo, but not in the suspensor, up to the globular stage. {ECO:0000269|PubMed:12376646}. TISSUE SPECIFICITY: Highly expressed in flowers and seeds and detected in leaves and stems. Found in ovule integuments, inflorescence and floral meristems, stigma of flowers until just before pollination, vasculature of the funiculus, and embryo. {ECO:0000269|PubMed:10556049, ECO:0000269|PubMed:12376646}. locus:2200960; AT1G01040 endoribonuclease Dicer Endoribonuclease Dicer homolog 1 (Dicer-like protein 1) (OsDCL1) (EC 3.1.26.-),Os03g0121901 protein,Os03g0121800 protein (Fragment) Q8LMR2,A0A0P0VSF3,A0A0P0VSG3 DCL1_ORYSJ,A0A0P0VSF3_ORYSJ,A0A0P0VSG3_ORYSJ DCL1 Os03g0121800 LOC_Os03g02970 OJ1705B08.11 OsJ_09217,Os03g0121901 OSNPB_030121901,Os03g0121800 OSNPB_030121800 DISRUPTION PHENOTYPE: Severe dwarfism and dark green color. Seedling viability compromised. {ECO:0000269|PubMed:16126864}. FUNCTION: Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production. {ECO:0000269|PubMed:16126864, ECO:0000269|PubMed:18353984}. ENOG411DRB4 CSLC4 Q9LJP4 CSLC4_ARATH Xyloglucan glycosyltransferase 4 (EC 2.4.1.-) (Cellulose synthase-like protein C4) (AtCslC4) (Xyloglucan synthase 4) FUNCTION: Beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose. Seems to work simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a noncellulosic polysaccharides of plant cell wall and consists of a glucan backbone substituted by xylose, galactose and fucose (PubMed:17488821). Associates with other xyloglucan-synthesizing enzymes to form multiprotein complexes for xyloglucan synthesis in the Golgi (PubMed:25392066). {ECO:0000269|PubMed:17488821, ECO:0000269|PubMed:25392066}. ARA:AT3G28180-MONOMER;MetaCyc:AT3G28180-MONOMER; 2.4.2.39; 2.4.1.- 77516 Xyloglucan glycosyltransferase 4 (EC 2.4.1.-) (Cellulose synthase-like protein C4) (AtCslC4) (Xyloglucan synthase 4) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; protein homodimerization activity [GO:0042803]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2089730; AT3G28180 xyloglucan glycosyltransferase NA NA NA NA NA NA NA ENOG411DRB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May be involved in modulation of pathogen defense and leaf cell death (By similarity) MLO-like protein A0A0P0WAK8 A0A0P0WAK8_ORYSJ Os04g0444400 MLO OSNPB_040444400 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. ENOG411DRB6 PDE318 Q8L7Q9,A0A1P8APB2,A0A1P8AP55,A0A1P8AP72,F4HU14,A0A1P8AP60 Q8L7Q9_ARATH,A0A1P8APB2_ARATH,A0A1P8AP55_ARATH,A0A1P8AP72_ARATH,F4HU14_ARATH,A0A1P8AP60_ARATH GTP-binding protein, putative (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein Pale green seeds and seedlings-D. Meinke-2003 50413,52207,48548,54073,39760,47806 GTP-binding protein, putative (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein GTP binding [GO:0005525]; hydrolase activity [GO:0016787] locus:2025827; AT1G80770 Nucleolar GTP-binding protein Nucleolar GTP-binding protein 1-like (Os08g0158900 protein) Q7EZC9 Q7EZC9_ORYSJ P0498E12.113 Os08g0158900 OsJ_26117 OSNPB_080158900 ENOG411DRB7 ECT6,ECT7 Q1JPL5,F4HWS5,A8MPR6 Q1JPL5_ARATH,F4HWS5_ARATH,A8MPR6_ARATH At3g17330 (Evolutionarily conserved C-terminal region 6),Evolutionarily conserved C-terminal region 7,Evolutionarily conserved C-terminal region 6 65650,70863,54415 At3g17330 (Evolutionarily conserved C-terminal region 6),Evolutionarily conserved C-terminal region 7,Evolutionarily conserved C-terminal region 6 mRNA binding [GO:0003729],RNA binding [GO:0003723] locus:2088995;,locus:2023807; AT3G17330,AT1G48110 YT521-B-like domain Os03g0317000 protein (YT521-B-like family protein, expressed) (cDNA clone:J013100F17, full insert sequence) Q10MA6 Q10MA6_ORYSJ Os03g0317000 LOC_Os03g20180 Os03g0317000 OSNPB_030317000 ENOG411DRB8 GATA27,GATA26 Q5PP38,Q8W4H1,F4JP79,F4JP80 GAT27_ARATH,GAT26_ARATH,F4JP79_ARATH,F4JP80_ARATH GATA transcription factor 27,GATA transcription factor 26 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 52601,56968,57368,58897 GATA transcription factor 27,GATA transcription factor 26 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154],sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270] locus:2151987;,locus:2129206; AT5G47140,AT4G17570 gata transcription factor OSJNBb0038F03.10 protein (Os04g0544500 protein) (cDNA clone:J023063M07, full insert sequence) Q7XN01 Q7XN01_ORYSJ Os04g0544500 Os04g0544500 OsJ_15656 OSJNBb0038F03.10 OSNPB_040544500 ENOG411DRB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0194600 protein A0A0P0VG12 A0A0P0VG12_ORYSJ Os02g0194600 OSNPB_020194600 ENOG411ED2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIW7 Q9LT36,Q4PSE5,Q3E939 Q9LT36_ARATH,Q4PSE5_ARATH,Q3E939_ARATH Proline-rich family protein,Hydroxyproline-rich glycoprotein family protein 14883,11478,15710 Proline-rich family protein,Hydroxyproline-rich glycoprotein family protein locus:2091901;,locus:2180577;,locus:2180592; AT3G20850,AT5G26070,AT5G26080 NA NA NA NA NA NA NA NA ENOG411EIW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 Os01g0512400 protein (Fragment) A0A0P0V394 A0A0P0V394_ORYSJ Os01g0512400 OSNPB_010512400 ENOG411EIW4 Q9FLC4 Q9FLC4_ARATH Gb|AAF01528.1 10555 Gb|AAF01528.1 regulation of innate immune response [GO:0045088] locus:2153584; AT5G05300 NA NA NA NA NA NA NA NA ENOG411EIW3 Q8LAL6 Q8LAL6_ARATH At1g24575 (DEAD-box ATP-dependent RNA helicase-like protein) 10350 At1g24575 (DEAD-box ATP-dependent RNA helicase-like protein) helicase activity [GO:0004386] locus:505006143; AT1G24575 NA NA NA NA NA NA NA NA ENOG411EIW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIW8 Q3EBI2 Q3EBI2_ARATH At2g41905 (Transmembrane protein) 5859 At2g41905 (Transmembrane protein) integral component of membrane [GO:0016021] locus:1006230173; AT2G41905 NA NA NA NA NA NA NA NA ENOG411EIWG Q8LGG2 Q8LGG2_ARATH Hydroxyproline-rich glycoprotein family protein 14855 Hydroxyproline-rich glycoprotein family protein anchored component of membrane [GO:0031225] locus:505006217; AT1G70985 NA NA NA NA NA NA NA NA ENOG411EIWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhomboid family NA NA NA NA NA NA NA ENOG411EIWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3355) Os05g0349000 protein (cDNA clone:J023006K02, full insert sequence) (cDNA clone:J023063E02, full insert sequence),Os02g0789700 protein,Os11g0608000 protein (Fragment),Os05g0349000 protein (Fragment) Q5W648,Q6K4M7,A0A0P0Y491,A0A0P0WL12 Q5W648_ORYSJ,Q6K4M7_ORYSJ,A0A0P0Y491_ORYSJ,A0A0P0WL12_ORYSJ Os05g0349000 OSJNBb0052F16.14 OSNPB_050349000,Os02g0789700 OJ1046_F07.12 OSJNBa0054K20.38 OSNPB_020789700,Os11g0608000 OSNPB_110608000,Os05g0349000 OSNPB_050349000 ENOG411EIWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycine rich protein family NA NA NA NA NA NA NA ENOG411EIWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ribosomal protein L.2 NA NA NA NA NA NA NA ENOG411EIWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7SB Q6NLF5 Q6NLF5_ARATH At5g18850 (Low-density receptor-like protein) 11296 At5g18850 (Low-density receptor-like protein) integral component of membrane [GO:0016021] locus:2144900; AT5G18850 NA NA NA NA NA NA NA NA ENOG411E7SD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7SI Q5Q0C3 Q5Q0C3_ARATH Fission regulator-like protein 13057 Fission regulator-like protein integral component of membrane [GO:0016021] locus:2103468; AT3G57500 NA NA NA NA NA NA NA NA ENOG411E7SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0314501 protein (cDNA, clone: J065076J12, full insert sequence),Os11g0663800 protein B7F8K3,A0A0P0Y580 B7F8K3_ORYSJ,A0A0P0Y580_ORYSJ Os06g0314501 OSNPB_060314501,Os11g0663800 OSNPB_110663800 ENOG411E7SP F4HV65 DRMH4_ARATH Dormancy-associated protein homolog 4 (DRM1 homolog 4) 13100 Dormancy-associated protein homolog 4 (DRM1 homolog 4) locus:2014325; AT1G54070 Dormancy/auxin associated protein NA NA NA NA NA NA NA ENOG411E7SU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0144800 protein,Os12g0140600 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:002-176-C01, full insert sequence) (cDNA clone:J033036L15, full insert sequence),Os12g0134500 protein (Fragment) B9G9D2,Q2QXW8,A0A0P0Y743 B9G9D2_ORYSJ,Q2QXW8_ORYSJ,A0A0P0Y743_ORYSJ Os11g0144800 OsJ_32939 OSNPB_110144800,LOC_Os12g04650 Os12g0140600 OsJ_35182 OSNPB_120140600,Os12g0134500 OSNPB_120134500 ENOG411E7SW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family 17kDa alpha-amylase/trypsin inhibitor 1 (allergen Ory s 17kD),17kDa alpha-amylase/trypsin inhibitor 2 (allergen Ory s 17kD) Q7X7E6,Q7X8H9 AI171_ORYSJ,AI172_ORYSJ Os07g0216600 OJ1080_F08.102 OJ1779_B07.129 OsJ_23555,Os07g0216700 LOC_Os07g11650 OJ1080_F08.106 OJ1779_B07.133 OsJ_23556 FUNCTION: Seed storage protein. {ECO:0000305}. ENOG411E7SZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os03g0252900 protein,Myb family transcription factor, putative (Os03g0855900 protein) B9F6T8,Q75IQ0 B9F6T8_ORYSJ,Q75IQ0_ORYSJ Os03g0252900 OsJ_10167 OSNPB_030252900,Os03g0855900 LOC_Os03g63890 Os03g63890 OsJ_13426 OSNPB_030855900 ENOG411E7S6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7S8 GASA11 F4IQJ4,A0A1P8B308 GASAB_ARATH,A0A1P8B308_ARATH Gibberellin-regulated protein 11 (GAST1 protein homolog 11),Gibberellin-regulated family protein FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 10155,7546 Gibberellin-regulated protein 11 (GAST1 protein homolog 11),Gibberellin-regulated family protein extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740] locus:2062175; AT2G18420 Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411EKHY C50 Q8GUN6 DNJ50_ARATH Chaperone protein dnaJ 50 (AtDjC50) (AtJ50) FUNCTION: May play a role in protein folding in the endoplasmic reticulum. {ECO:0000305|PubMed:18718935}. 34952 Chaperone protein dnaJ 50 (AtDjC50) (AtJ50) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in leaves, flower buds and flowers. {ECO:0000269|PubMed:18718935}. locus:2195723; AT1G61770 dnaJ homolog subfamily C member DnaJ protein ERDJ7 (Chaperone protein dnaJ C79) (OsDjC79) (Endoplasmic reticulum dnaJ domain-containing protein 7) (OsERdj7) Q2QUP1 DJC79_ORYSJ ERDJ7 DJC79 Os12g0258200 LOC_Os12g15590 FUNCTION: May play a role in protein folding in the endoplasmic reticulum. {ECO:0000305|PubMed:24153418}. ENOG411EKHV SUVH2,SUVH9 O22781,Q9T0G7 SUVH2_ARATH,SUVH9_ARATH Histone-lysine N-methyltransferase family member SUVH2 (Cytosine-HMTase 2) (H3-K27-HMTase 2) (H4-K20-HMTase 2) (Histone H3-K9 methyltransferase 2) (H3-K9-HMTase 2) (Protein SET DOMAIN GROUP 3) (Suppressor of variegation 3-9 homolog protein 2) (Su(var)3-9 homolog protein 2),Histone-lysine N-methyltransferase family member SUVH9 (Histone H3-K9 methyltransferase 9) (H3-K9-HMTase 9) (Protein SET DOMAIN GROUP 22) (Suppressor of variegation 3-9 homolog protein 9) (Su(var)3-9 homolog protein 9) DISRUPTION PHENOTYPE: Impaired gene silencing due to decondensation of chromocenters leading to the derepression of DNA-methylated genes and transposable elements (TEs). {ECO:0000269|PubMed:27171427}. FUNCTION: Histone methyltransferase family member that plays a central role in gene silencing (PubMed:15775980, PubMed:16384625, PubMed:19043555, PubMed:24463519, PubMed:27171427). Together with MORC6 and SUVH9, regulates the silencing of some transposable elements (TEs) (PubMed:27171427). According to PubMed:15775980, it is required for normal methylation of 'Lys-9' and 'Lys-27' of histone H3, 'Lys-20' of H4, and cytosine, but PubMed:19043555 see no significant effect on histone methylation when the gene is mutated. According to PubMed:19043555, the protein does not bind S-adenosyl-L-methionine and lacks methyltransferase activity. Instead, it may function downstream of DRM2 in RNA-directed DNA methylation, binding to methylated DNA and recruiting DNA-directed RNA polymerase V to chromatin (PubMed:24463519, PubMed:27171427). {ECO:0000269|PubMed:15775980, ECO:0000269|PubMed:16384625, ECO:0000269|PubMed:19043555, ECO:0000269|PubMed:24463519, ECO:0000269|PubMed:27171427}.,FUNCTION: Histone methyltransferase family member that plays a role in gene silencing (PubMed:19043555, PubMed:24463519, PubMed:27171427). Together with MORC6 and SUVH2, regulates the silencing of some transposable elements (TEs) (PubMed:27171427). According to PubMed:19043555, the protein does not bind S-adenosyl-L-methionine and lacks methyltransferase activity. Instead, it may function downstream of DRM2 in RNA-directed DNA methylation, binding to methylated DNA and recruiting DNA-directed RNA polymerase V to chromatin (PubMed:24463519, PubMed:27171427). {ECO:0000269|PubMed:19043555, ECO:0000269|PubMed:24463519, ECO:0000269|PubMed:27171427}. R-ATH-3214841; 72848,72174 Histone-lysine N-methyltransferase family member SUVH2 (Cytosine-HMTase 2) (H3-K27-HMTase 2) (H4-K20-HMTase 2) (Histone H3-K9 methyltransferase 2) (H3-K9-HMTase 2) (Protein SET DOMAIN GROUP 3) (Suppressor of variegation 3-9 homolog protein 2) (Su(var)3-9 homolog protein 2),Histone-lysine N-methyltransferase family member SUVH9 (Histone H3-K9 methyltransferase 9) (H3-K9-HMTase 9) (Protein SET DOMAIN GROUP 22) (Suppressor of variegation 3-9 homolog protein 9) (Su(var)3-9 homolog protein 9) chromosome, centromeric region [GO:0000775]; nuclear heterochromatin [GO:0005720]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone binding [GO:0042393]; histone methyltransferase activity [GO:0042054]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; histone methylation [GO:0016571]; regulation of gene expression, epigenetic [GO:0040029]; RNA-directed DNA methylation [GO:0080188],chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone binding [GO:0042393]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; DNA mediated transformation [GO:0009294]; RNA-directed DNA methylation [GO:0080188] TISSUE SPECIFICITY: Expressed at low levels in leaves stems and flowers. {ECO:0000269|PubMed:11691919}. locus:2051083;,locus:2140827; AT2G33290,AT4G13460 SRA Os07g0435900 protein (Putative SET-domain transcriptional regulator) (cDNA clone:J013097K17, full insert sequence) Q7XHM7 Q7XHM7_ORYSJ Os07g0435900 OSJNBb0095H08.7 OSNPB_070435900 ENOG411EKHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family NA NA NA NA NA NA NA ENOG411EKHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EKHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Proteasome complex subunit Rpn13 ubiquitin receptor NA NA NA NA NA NA NA ENOG411EKHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family Expressed protein (Os10g0559900 protein) (cDNA clone:J023040K18, full insert sequence) Q7XC72 Q7XC72_ORYSJ Os10g0559900 OSJNBa0042H09.18 LOC_Os10g41050 Os10g0559900 OsJ_32448 OSNPB_100559900 ENOG411EKHB T8B10_80 Q9M217 Q9M217_ARATH At3g60420 (Phosphoglycerate mutase family protein) (Uncharacterized protein At3g60420/T8B10_80) (Uncharacterized protein T8B10_80) 30365 At3g60420 (Phosphoglycerate mutase family protein) (Uncharacterized protein At3g60420/T8B10_80) (Uncharacterized protein T8B10_80) AT3G60420 Pfam:PGAM NA NA NA NA NA NA NA ENOG411EKH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA trihelix transcription factor GT-2-like NA NA NA NA NA NA NA ENOG411EERK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIG1 family NA NA NA NA NA NA NA ENOG411E6A0 O22846 O22846_ARATH F14B2.25/F14B2.25 (Ribosomal L18p/L5e family protein) (Uncharacterized protein At2g43310) (Uncharacterized protein At2g43310/F14B2.31) 15002 F14B2.25/F14B2.25 (Ribosomal L18p/L5e family protein) (Uncharacterized protein At2g43310) (Uncharacterized protein At2g43310/F14B2.31) ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2041066; AT2G43310 NA NA NA NA NA NA NA NA ENOG411EER1 ZHD12 Q9FKJ9 ZHD12_ARATH Zinc-finger homeodomain protein 12 (AtZHD12) (Homeobox protein 26) (AtHB-26) FUNCTION: Putative transcription factor. 25237 Zinc-finger homeodomain protein 12 (AtZHD12) (Homeobox protein 26) (AtHB-26) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2175138; AT5G60480 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411EG1V A0A1P8AU60,F4HUN5,F4HUM4,F4HUM3,F4HUN7 A0A1P8AU60_ARATH,F4HUN5_ARATH,F4HUM4_ARATH,F4HUM3_ARATH,F4HUN7_ARATH Transport/golgi organization-like protein (DUF833),Transport/golgi organization-like protein, putative (DUF833) 29623,28994,30370,29678,30272 Transport/golgi organization-like protein (DUF833),Transport/golgi organization-like protein, putative (DUF833) locus:2030507;,locus:2030437;,locus:2030402; AT1G20730,AT1G20680,AT1G20740 Pfam:DUF833 NA NA NA NA NA NA NA ENOG411EG1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PIG-P NA NA NA NA NA NA NA ENOG411EG1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1N Q8L8T4 Q8L8T4_ARATH At1g30515 (GATA zinc finger protein) 15684 At1g30515 (GATA zinc finger protein) integral component of membrane [GO:0016021] locus:505006157; AT1G30515 Inherit from KOG: This enzyme is required for electron transfer from NADP to cytochrome P450 (By similarity) NA NA NA NA NA NA NA ENOG411EG13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EEDW Q9XIA2,A0A1P8AVW1,A0A1P8AVW3 FB49_ARATH,A0A1P8AVW1_ARATH,A0A1P8AVW3_ARATH F-box protein At1g49360,F-box family protein 55267,43638,52627 F-box protein At1g49360,F-box family protein locus:2010172; AT1G49360 FBOX NA NA NA NA NA NA NA ENOG411EEDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP NA NA NA NA NA NA NA ENOG411EEDU AVT6D,AVT6C Q0WQJ3,Q9LYM2 AVT6D_ARATH,AVT6C_ARATH Amino acid transporter AVT6D (AtAvt6D),Amino acid transporter AVT6C (AtAvt6C) 47670,47105 Amino acid transporter AVT6D (AtAvt6D),Amino acid transporter AVT6C (AtAvt6C) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2063068;,locus:2078381; AT2G40420,AT3G56200 amino acid NA NA NA NA NA NA NA ENOG411EEDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEDS FLS3 Q9FFQ5 FLS3_ARATH Flavonol synthase 3 (EC 1.14.11.23) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18467451, ECO:0000269|PubMed:18998159}. FUNCTION: Catalyzes the formation of flavonols from dihydroflavonols. Possesses low activity in vitro towards dihydrokaempferol and dihydroquercetin producing kaempferol and quercitin, respectively. {ECO:0000269|PubMed:18998159, ECO:0000269|PubMed:19433090}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT5G63590-MONOMER; 1.14.11.23; 1.14.11.23 35452 Flavonol synthase 3 (EC 1.14.11.23) flavonol synthase activity [GO:0045431]; metal ion binding [GO:0046872]; flavonoid biosynthetic process [GO:0009813]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Widely expressed at low levels. {ECO:0000269|PubMed:18467451}. locus:2160589; AT5G63590 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EEDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM NA NA NA NA NA NA NA ENOG411EEDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif NA NA NA NA NA NA NA ENOG411EEDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: exportin NA NA NA NA NA NA NA ENOG411EEDY MSD2 Q9LYK8 SODM2_ARATH Superoxide dismutase [Mn] 2, mitochondrial (EC 1.15.1.1) (Protein MANGANESE SUPEROXIDE DISMUTASE 2) (AtMSD2) FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. {ECO:0000250}. ARA:AT3G56350-MONOMER; R-ATH-3299685; 1.15.1.1 26892 Superoxide dismutase [Mn] 2, mitochondrial (EC 1.15.1.1) (Protein MANGANESE SUPEROXIDE DISMUTASE 2) (AtMSD2) mitochondrial matrix [GO:0005759]; metal ion binding [GO:0046872]; superoxide dismutase activity [GO:0004784]; floral organ abscission [GO:0010227] locus:2078356; AT3G56350 radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) NA NA NA NA NA NA NA ENOG411EEDF PUMP6 Q9FY68 PUMP6_ARATH Mitochondrial uncoupling protein 6 (AtPUMP6) (Mitochondrial dicarboxylate carrier 3) FUNCTION: PUMPS are mitochondrial transporter proteins that create proton leaks across the inner mitochondrial membrane, thus uncoupling oxidative phosphorylation. This leads to a decrease in the efficiency of oxidative phosphorylation and an increase in heat production. May be involved in protecting plant cells against oxidative stress damage (By similarity). Recombinant PUMP6, reconstituted into liposomes, transports a wide range of dicarboxylic acids including malate, oxaloacetate and succinate as well as phosphate, sulfate and thiosulfate. However, it is unknown if these transports are of any biological significance in vivo. {ECO:0000250, ECO:0000269|PubMed:18039180}. R-ATH-1614517;R-ATH-428643;R-ATH-70263; 36096 Mitochondrial uncoupling protein 6 (AtPUMP6) (Mitochondrial dicarboxylate carrier 3) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; antiporter activity [GO:0015297]; dicarboxylic acid transmembrane transporter activity [GO:0005310]; malate transmembrane transporter activity [GO:0015140]; oxaloacetate transmembrane transporter activity [GO:0015131]; phosphate transmembrane transporter activity [GO:1901677]; succinate transmembrane transporter activity [GO:0015141]; sulfate transmembrane transporter activity [GO:0015116]; thiosulfate transmembrane transporter activity [GO:0015117]; malate transmembrane transport [GO:0071423]; mitochondrial transport [GO:0006839]; oxaloacetate transport [GO:0015729]; phosphate ion transmembrane transport [GO:0035435]; succinate transmembrane transport [GO:0071422]; sulfate transport [GO:0008272]; thiosulfate transport [GO:0015709] locus:2184832; AT5G09470 Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EEDB AOP3,AOP2 Q9ZTA1,Q9ZTA2 AOP3C_ARATH,AOP2C_ARATH 2-oxoglutarate-dependent dioxygenase AOP3 (EC 1.14.11.-),Probable inactive 2-oxoglutarate-dependent dioxygenase AOP2 FUNCTION: 2-oxoglutarate-dependent dioxygenase involved in glucosinolates biosynthesis. Catalyzes the conversion of methylsulfinylalkyl glucosinolates to hydroxyalkyl glucosinolates (By similarity). {ECO:0000250}. MetaCyc:AT4G03050-MONOMER; 1.14.11.- 44963,44221 2-oxoglutarate-dependent dioxygenase AOP3 (EC 1.14.11.-),Probable inactive 2-oxoglutarate-dependent dioxygenase AOP2 metal ion binding [GO:0046872]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [GO:0016706]; glucosinolate biosynthetic process [GO:0019761],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Not expressed. locus:2139370; AT4G03050,AT4G03060 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EEDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0301500 protein (Fragment) A0A0P0X5A7 A0A0P0X5A7_ORYSJ Os07g0301500 OSNPB_070301500 ENOG411EED6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0305300 protein A0A0N7KF56 A0A0N7KF56_ORYSJ Os02g0305300 OSNPB_020305300 ENOG411EED7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EED4 PMEI6 O22244 PMEI6_ARATH Pectinesterase inhibitor 6 (Pectin methylesterase inhibitor 6) (AtPMEI6) FUNCTION: Pectin methylesterase (PME) inhibitor that targets PME from seeds and modulates PME activity and pectin methylesterification during seed germination. Promotes mucilage release by limiting methylesterification of homogalacturonan in seed coat epidermal cells. {ECO:0000269|PubMed:23362209}. 23178 Pectinesterase inhibitor 6 (Pectin methylesterase inhibitor 6) (AtPMEI6) apoplast [GO:0048046]; pectinesterase inhibitor activity [GO:0046910]; seed coat development [GO:0010214] locus:2043398; AT2G47670 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EED5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EED2 Q940G5 Q940G5_ARATH Galactose mutarotase-like superfamily protein (Possible apospory-associated like protein) ARA:GQT-1745-MONOMER; 36252 Galactose mutarotase-like superfamily protein (Possible apospory-associated like protein) cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; carbohydrate binding [GO:0030246]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975] locus:2117572; AT4G25900 Aldose 1-epimerase family protein NA NA NA NA NA NA NA ENOG411EED0 WOX6 Q9ZVF5 WOX6_ARATH WUSCHEL-related homeobox 6 (Protein PRETTY FEW SEEDS 2) FUNCTION: Transcription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}. 31453 WUSCHEL-related homeobox 6 (Protein PRETTY FEW SEEDS 2) nucleus [GO:0005634]; primary endosperm nucleus [GO:0048353]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; cell division [GO:0051301]; cell growth [GO:0016049]; embryo sac morphogenesis [GO:0048314]; floral organ development [GO:0048437]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; petal morphogenesis [GO:0048446]; plant ovule morphogenesis [GO:0048482]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In developing seeds, it is expressed in the embryo, suspensor and endosperm nuclei, but absent in the integuments. In seedlings, it is expressed in the shoot apical meristem and leaf primordia, but not in expanded cotyledons or mature leaves. In reproductive structures, transcripts could be detected in floral apical meristems, floral primordia, stamens and pistils. Also expressed in the tapetum in anthers and in the gynoecium. Weakly expressed in petals, sepals and the walls of carpels. {ECO:0000269|PubMed:15659481}. TISSUE SPECIFICITY: Highly expressed in developing ovules. Present in developing primordia and differentiating organs but absent in mature organs. {ECO:0000269|PubMed:15659481}. locus:2049547; AT2G01500 Homeobox domain NA NA NA NA NA NA NA ENOG411EED1 Q39165 OLEO2_ARATH Oleosin 21.2 kDa (Oleosin type 2) ole2 seeds have larger oil bodies than wild-type. OLE2 dificiency leads to loss of freezing tolerance of Arabidopsis seeds. Treating ole2 seeds with freezing (at -30°C for 1 day) delays their germination although ole2 seeds without freezing treatment germinate normally. Seeds of ole1 ole2 double mutant exhibit severe phenotypes. Oil bodies of ole1 ole2 double mutant are much larger than ole2. ole1 ole2 seeds hardly germinate. None of the ole1 ole2 seeds that are treated with freezing (at -30°C for 1 day) germinate. Oil bodies of ole2 ole3 double mutant are much larger than ole2. Treating ole2 ole3 seeds with freezing (at -30°C for 1 day) inhibits and delay their germination although ole2 ole3 seeds without freezing treatment germinate normally.,Oil bodies of ole1 ole2 double mutant are much larger than ole1 and ole2 single mutants. ole1 ole2 seeds hardly germinate. None of them that are treated with freezing (at -30°C for 1 day) germinate.,Oil bodies of ole2 ole3 double mutant are much larger than ole2 and ole3 single mutants. Treating ole2 ole3 seeds with freezing (at -30°C for 1 day) inhibits and delays their germination although ole2 ole3 seeds without freezing germinate normally. Abnormal germination; Large oil bodies -I. Hara-Nishimura-2008 FUNCTION: May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth (By similarity). {ECO:0000250}. 21279 Oleosin 21.2 kDa (Oleosin type 2) integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; mRNA binding [GO:0003729]; lipid storage [GO:0019915]; response to freezing [GO:0050826]; seed germination [GO:0009845]; seed oilbody biogenesis [GO:0010344] DEVELOPMENTAL STAGE: In siliques, expression is first detected at stage 7 when the siliques are green-brown. Expression then rises steadily to reach a maximum at maturity. {ECO:0000269|PubMed:8756608}. locus:2170558; AT5G40420 Oleosin NA NA NA NA NA NA NA ENOG411EED8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EED9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411E10X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) OSJNBb0034I13.9 protein (Os04g0636900 protein) (cDNA clone:001-015-B10, full insert sequence) (cDNA clone:J033037I12, full insert sequence),Os10g0525700 protein,Os06g0304050 protein Q0J9Q1,Q8S7T1,A0A0P0WVY1 Q0J9Q1_ORYSJ,Q8S7T1_ORYSJ,A0A0P0WVY1_ORYSJ Os04g0636900 Os04g0636900 OSJNBb0034I13.9 OSNPB_040636900,Os10g0525700 LOC_Os10g38170 OsJ_32221 OSJNBb0005J14.22 OSNPB_100525700,Os06g0304050 OSNPB_060304050 ENOG411E341 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0272400 protein) (cDNA clone:J023050K07, full insert sequence) Q10ND9 Q10ND9_ORYSJ LOC_Os03g16580 Os03g0272400 OsJ_10310 OSNPB_030272400 ENOG411E343 MEE4 O49313,Q8RWA7,A0A1P8B0W9 NDADB_ARATH,NDADA_ARATH,A0A1P8B0W9_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A (Protein MATERNAL EFFECT EMBRYO ARREST 4),GRIM-19 protein FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT2G33220-MONOMER;MetaCyc:AT2G33220-MONOMER; 16122,16126,19647 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A (Protein MATERNAL EFFECT EMBRYO ARREST 4),GRIM-19 protein integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; oxidation-reduction process [GO:0055114]; photorespiration [GO:0009853],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; embryo development ending in seed dormancy [GO:0009793]; oxidation-reduction process [GO:0055114]; photorespiration [GO:0009853],integral component of membrane [GO:0016021] locus:2046575;,locus:2197833; AT2G33220,AT1G04630 NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit GRIM-19 protein, expressed (Os03g0192400 protein) (cDNA clone:J023056B01, full insert sequence) Q10QL6 Q10QL6_ORYSJ Os03g0192400 LOC_Os03g09210 Os03g0192400 OsJ_09737 OSNPB_030192400 ENOG411E346 Q9SGP9 Q9SGP9_ARATH At1g28510/F3M18_5 (F3M18.5) (Optic atrophy 3 protein (OPA3)) 19179 At1g28510/F3M18_5 (F3M18.5) (Optic atrophy 3 protein (OPA3)) mitochondrion [GO:0005739]; regulation of lipid metabolic process [GO:0019216] locus:2032548; AT1G28510 Optic atrophy 3 protein (OPA3) Os01g0242300 protein (cDNA clone:J023044E02, full insert sequence) Q5NA80 Q5NA80_ORYSJ Os01g0242300 Os01g0242300 B1066G12.14 OSNPB_010242300 ENOG411E347 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0316100 protein (cDNA clone:001-115-A01, full insert sequence) (cDNA clone:002-130-G06, full insert sequence) Q5Z4Q7 Q5Z4Q7_ORYSJ Os06g0316100 Os06g0316100 B1156C07.28 OSNPB_060316100 ENOG411E348 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others Os06g0141200 protein (Putative zinc finger transcription factor ZFP30) (cDNA clone:006-211-B04, full insert sequence) (cDNA clone:J013154B21, full insert sequence) Q9SNS0 Q9SNS0_ORYSJ Os06g0141200 OSNPB_060141200 P0535G04.5 ENOG411E34P ARR3 Q9ZWS9,A0A1P8ATH0 ARR3_ARATH,A0A1P8ATH0_ARATH Two-component response regulator ARR3,Response regulator 3 altered red light sensitivity,lengthens the period of the clock in all conditions FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:14973166, ECO:0000269|PubMed:9482949}. 25250,36580 Two-component response regulator ARR3,Response regulator 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; circadian rhythm [GO:0007623]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; red light signaling pathway [GO:0010161]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay signal transduction system [GO:0000160] TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:9482949}. locus:2025911; AT1G59940 response regulator NA NA NA NA NA NA NA ENOG411E34Q ISU2,ISU1 Q9MAB6,O49627 ISU2_ARATH,ISU1_ARATH Iron-sulfur cluster assembly protein 2 (AtISU2) (Protein ISCU-LIKE 2) (NifU-like N-terminal domain-containing protein ISU2) (NifU-like protein ISU2),Iron-sulfur cluster assembly protein 1 (AtISU1) (Protein ISCU-LIKE 1) (NifU-like N-terminal domain-containing protein ISU1) (NifU-like protein ISU1) Dwarf; Thin inflorescence stems; Increased branching-B. Winkel-2007 FUNCTION: Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (PubMed:17417719). First, a [2Fe-2S] cluster is transiently assembled on the scaffold protein ISCU (ISU1, ISU2 or ISU3). In a second step, the cluster is released from ISCU, transferred to a glutaredoxin, followed by the formation of mitochondrial [2Fe-2S] proteins, the synthesis of [4Fe-4S] clusters and their target-specific insertion into the recipient apoproteins. Cluster assembly on ISCU depends on the function of the cysteine desulfurase complex NFS1-ISD11, which serves as the sulfur donor for cluster synthesis, the iron-binding protein frataxin as the putative iron donor, and the electron transfer chain comprised of ferredoxin reductase and ferredoxin, which receive their electrons from NADH (By similarity). {ECO:0000250|UniProtKB:Q03020, ECO:0000269|PubMed:17417719}.,FUNCTION: Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (PubMed:15507320, PubMed:17417719). First, a [2Fe-2S] cluster is transiently assembled on the scaffold protein ISCU (ISU1, ISU2 or ISU3). In a second step, the cluster is released from ISCU, transferred to a glutaredoxin, followed by the formation of mitochondrial [2Fe-2S] proteins, the synthesis of [4Fe-4S] clusters and their target-specific insertion into the recipient apoproteins. Cluster assembly on ISCU depends on the function of the cysteine desulfurase complex NFS1-ISD11, which serves as the sulfur donor for cluster synthesis, the iron-binding protein frataxin as the putative iron donor, and the electron transfer chain comprised of ferredoxin reductase and ferredoxin, which receive their electrons from NADH (By similarity). {ECO:0000250|UniProtKB:Q03020, ECO:0000269|PubMed:15507320, ECO:0000269|PubMed:17417719}. PATHWAY: Cofactor biosynthesis; iron-sulfur cluster biosynthesis. {ECO:0000250|UniProtKB:Q03020}. R-ATH-1362409; 17745,17915 Iron-sulfur cluster assembly protein 2 (AtISU2) (Protein ISCU-LIKE 2) (NifU-like N-terminal domain-containing protein ISU2) (NifU-like protein ISU2),Iron-sulfur cluster assembly protein 1 (AtISU1) (Protein ISCU-LIKE 1) (NifU-like N-terminal domain-containing protein ISU1) (NifU-like protein ISU1) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ferrous iron binding [GO:0008198]; iron-sulfur transferase activity [GO:0036455]; structural molecule activity [GO:0005198]; cellular iron ion homeostasis [GO:0006879]; iron-sulfur cluster assembly [GO:0016226]; protein maturation by iron-sulfur cluster transfer [GO:0097428] TISSUE SPECIFICITY: Mostly expressed in leaves, pollen and flowers. {ECO:0000269|PubMed:15792798, ECO:0000269|PubMed:17417719}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, pollen and siliques. {ECO:0000269|PubMed:15507320, ECO:0000269|PubMed:15792798, ECO:0000269|PubMed:17417719}. locus:2102122;,locus:2132090; AT3G01020,AT4G22220 iron-sulfur cluster assembly NA NA NA NA NA NA NA ENOG411E34T CML14,CML13 Q8VZ50,Q94AZ4 CML14_ARATH,CML13_ARATH Probable calcium-binding protein CML14 (Calmodulin-like protein 14),Probable calcium-binding protein CML13 (Calmodulin-like protein 13) FUNCTION: Potential calcium sensor. {ECO:0000250}. 16579,16517 Probable calcium-binding protein CML14 (Calmodulin-like protein 14),Probable calcium-binding protein CML13 (Calmodulin-like protein 13) cytosol [GO:0005829]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; response to cold [GO:0009409],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509] locus:2026252;,locus:2034635; AT1G62820,AT1G12310 calcium-binding protein Probable calcium-binding protein CML7 (Calmodulin-like protein 7) Q84VG0 CML7_ORYSJ CML7 Os08g0117400 LOC_Os08g02420 OsJ_024805 P0470F10.20 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E34U Q9LXB4 Y5620_ARATH Putative RNA methyltransferase At5g10620 (EC 2.1.1.-) 2.1.1.- 21533 Putative RNA methyltransferase At5g10620 (EC 2.1.1.-) cytoplasm [GO:0005737]; methyltransferase activity [GO:0008168]; rRNA processing [GO:0006364] locus:2142479; AT5G10620 RNA methyltransferase Os04g0606900 protein (cDNA clone:006-311-E09, full insert sequence) (cDNA clone:J033132B15, full insert sequence) Q0JAB9 Q0JAB9_ORYSJ Os04g0606900 Os04g0606900 OsJ_16081 OSNPB_040606900 ENOG411E34V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIFY NA NA NA NA NA NA NA ENOG411E34W ZFP7 Q39266 ZFP7_ARATH Zinc finger protein 7 FUNCTION: Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. MISCELLANEOUS: Seeds over-expressing ZFP7 are insensitive to inhibition of germination by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. 23166 Zinc finger protein 7 nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; glucosinolate metabolic process [GO:0019760]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; regulation of transcription, DNA-templated [GO:0006355] locus:2825107; AT1G24625 zinc finger protein Os12g0581900 protein (Zinc finger protein 7, putative, expressed) (cDNA clone:J013056L24, full insert sequence) Q2QN25 Q2QN25_ORYSJ LOC_Os12g39220 Os12g0581900 OsJ_36664 OSNPB_120581900 ENOG411E34Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) NA NA NA NA NA NA NA ENOG411E34E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Os07g0108500 protein (Fragment) A0A0P0X1T4 A0A0P0X1T4_ORYSJ Os07g0108500 OSNPB_070108500 ENOG411E34F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EF hand family protein Os10g0116300 protein (Fragment),Os09g0482840 protein (cDNA clone:002-114-C07, full insert sequence),Os09g0483300 protein,Os09g0483100 protein,Os09g0482800 protein (cDNA clone:001-123-B12, full insert sequence) (cDNA clone:J033097N16, full insert sequence),Os09g0483500 protein (cDNA clone:J023148I04, full insert sequence),Calcium-binding EF-hand family protein-like (Os08g0502600 protein) (cDNA clone:002-132-F07, full insert sequence) Q0IZA0,A3C021,Q0J0U3,Q0J0U5,A3C020,Q0J0U0,Q6ZFI7 Q0IZA0_ORYSJ,A3C021_ORYSJ,Q0J0U3_ORYSJ,Q0J0U5_ORYSJ,A3C020_ORYSJ,Q0J0U0_ORYSJ,Q6ZFI7_ORYSJ Os10g0116300 OSNPB_100116300,Os09g0482840 Os09g0482840 OsJ_29798 OSNPB_090482840,Os09g0483300 Os09g0483300 OsJ_29805 OSNPB_090483300,Os09g0483100 Os09g0483100 OsJ_29803 OSNPB_090483100,Os09g0482800 OsJ_29796 OSNPB_090482800,Os09g0483500 Os09g0483500 OsJ_29807 OSNPB_090483500,Os08g0502600 Os08g0502600 OJ1345_D02.37 OJ1506_F01.9 OsJ_27849 OSNPB_080502600 ENOG411E34I Q9MAD0 Q9MAD0_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (T4P13.10 protein) 26411 RNA-binding (RRM/RBD/RNP motifs) family protein (T4P13.10 protein) nucleic acid binding [GO:0003676] locus:2102067; AT3G01210 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E34J MXC20.6 Q9FLX7,A0A1P8BD41,F4JKF9 NDUA5_ARATH,A0A1P8BD41_ARATH,F4JKF9_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial,NADH-ubiquinone oxidoreductase-like protein,NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT5G52840-MONOMER;MetaCyc:AT5G52840-MONOMER; 19179,13587,12778 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial,NADH-ubiquinone oxidoreductase-like protein,NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; oxidoreductase activity, acting on NAD(P)H [GO:0016651]; photorespiration [GO:0009853]; respiratory electron transport chain [GO:0022904],mitochondrial inner membrane [GO:0005743]; oxidoreductase activity, acting on NAD(P)H [GO:0016651]; respiratory electron transport chain [GO:0022904] locus:2176917;,locus:504955387; AT5G52840,AT4G28005 NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 5 ETC complex I subunit conserved region family protein, expressed (Os03g0313000 protein) Q10MD5 Q10MD5_ORYSJ Os03g0313000 LOC_Os03g19890 Os03g0313000 OSNPB_030313000 ENOG411E34M NAC082,NAC103 Q9FY82,Q9FMJ1 NAC82_ARATH,Q9FMJ1_ARATH NAC domain-containing protein 82 (ANAC082) (Protein VND-INTERACTING 1),NAC domain containing protein 103 (Similarity to NAM) FUNCTION: Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. 54442,39868 NAC domain-containing protein 82 (ANAC082) (Protein VND-INTERACTING 1),NAC domain containing protein 103 (Similarity to NAM) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. locus:2184742;,locus:2164391; AT5G09330,AT5G64060 nac domain NAM-like protein (Os05g0426200 protein) (Transcription factor) (Unknow protein) (cDNA clone:J013032G17, full insert sequence) Q60EC0 Q60EC0_ORYSJ Os05g0426200 OsJ_18610 OSJNBa0044P19.7 OSNPB_050426200 ENOG411EK48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411EK49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA His Kinase A (phospho-acceptor) domain NA NA NA NA NA NA NA ENOG411EK40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Component of the Mediator complex a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors NA NA NA NA NA NA NA ENOG411EK42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PDS5 regulator of cohesion maintenance homolog BRI1-KD interacting protein 135 (Os02g0612800 protein) Q6K624 Q6K624_ORYSJ Os02g0612800 OJ1004_A05.34 OsJ_07506 OSNPB_020612800 ENOG411EK43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os03g0436500 protein (Fragment) Q0DQY3 Q0DQY3_ORYSJ Os03g0436500 Os03g0436500 OSNPB_030436500 ENOG411EK44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynamin family NA NA NA NA NA NA NA ENOG411EK45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EH NA NA NA NA NA NA NA ENOG411EK46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EH EF hand family protein, expressed (Os03g0130500 protein) Q10S92 Q10S92_ORYSJ LOC_Os03g03830 Os03g0130500 OSNPB_030130500 ENOG411EK47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EH NA NA NA NA NA NA NA ENOG411EK4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein B1159F04.6 protein (OSJNBb0046K02.17 protein) (Os04g0333300 protein) Q7XK82 Q7XK82_ORYSJ Os04g0333300 B1159F04.6 OsJ_14303 OSJNBb0046K02.17 OSNPB_040333300 ENOG411EK4I Q3E7T9 Q3E7T9_ARATH Pol-like polyprotein/retrotransposon 12658 Pol-like polyprotein/retrotransposon locus:504955662; AT3G29785 NA NA NA NA NA NA NA NA ENOG411EK4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os08g0124900 protein,Os08g0124600 protein (Fragment) A0A0P0XBC7,A0A0N7KP75 A0A0P0XBC7_ORYSJ,A0A0N7KP75_ORYSJ Os08g0124900 OSNPB_080124900,Os08g0124600 OSNPB_080124600 ENOG411EK4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EK4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EK4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sensory histidine protein kinase NA NA NA NA NA NA NA ENOG411EK4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EK4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA His Kinase A (phospho-acceptor) domain NA NA NA NA NA NA NA ENOG411EK4D AN,ASG4 O23702,A0A1P8AM82 CTBP_ARATH,A0A1P8AM82_ARATH C-terminal binding protein AN (CtBP) (Protein ANGUSTIFOLIA) (Protein DETORQUEO),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Dwarfism. Impaired cortical microtubules (MTs) arrangement leading to abnormal cell shapes (reduced complexity), and narrow but thick leaves, characterized by cells small in the leaf-width direction and large in the leaf-thickness direction; this phenotype is also slightly observed in floral organs. Reduced trichome branching. Twisted siliques and reduced seed productivity. Delayed flowering and senescence, but increased tolerance to drought and pathogen attack. {ECO:0000269|PubMed:10572032, ECO:0000269|PubMed:11889033, ECO:0000269|PubMed:12079678, ECO:0000269|PubMed:19843316, ECO:0000269|PubMed:23368817, ECO:0000269|PubMed:23672620, ECO:0000269|PubMed:8625845, ECO:0000269|PubMed:9736998}. Phenotype not described.,Trichomes of mutant undergo primary but not secondary branching.,Unbranched trichomes.,Predominantly produces unbranched trichomes.,Reduced but still significant number of branched trichomes.,Trichomes have only one branch point. Narrow leaves; Narrow, slightly elongated floral organs; Twisted siliques-H. Uchimiya-1996 FUNCTION: Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Required for cortical microtubules (MTs) arrangement that confers cell shape. Regulates the width of leaves by controlling the polar elongation of leaf cells. Involved in the regulation of trichome branching. Seems to not be able to regulate gene transcription. Regulates epidermal cell divisions and elongation in a non-cell-autonomous manner (regulated by subepidermal cells), but regulates epidermal cell polarity, shape, trichome branching and elongation in a cell-autonomous manner. Negatively regulates growth in the petiole elongation. Prevents lipid peroxidation as a result of abiotic stress response. Is involved in the SUB-dependent signaling mechanism and may act in a membrane trafficking event around the trans-Golgi network. {ECO:0000250, ECO:0000269|PubMed:10572032, ECO:0000269|PubMed:11889033, ECO:0000269|PubMed:12079678, ECO:0000269|PubMed:17972097, ECO:0000269|PubMed:19843316, ECO:0000269|PubMed:23368817, ECO:0000269|PubMed:23672620, ECO:0000269|PubMed:8625845, ECO:0000269|PubMed:9736998}. 70150,23004 C-terminal binding protein AN (CtBP) (Protein ANGUSTIFOLIA) (Protein DETORQUEO),Homeodomain-like superfamily protein cytosol [GO:0005829]; microtubule [GO:0005874]; trans-Golgi network [GO:0005802]; identical protein binding [GO:0042802]; NAD binding [GO:0051287]; protein homodimerization activity [GO:0042803]; floral organ morphogenesis [GO:0048444]; fruit morphogenesis [GO:0048530]; inductive cell-cell signaling [GO:0031129]; leaf morphogenesis [GO:0009965]; microtubule cytoskeleton organization [GO:0000226]; monopolar cell growth [GO:0042814]; oxidation-reduction process [GO:0055114]; regulation of cell shape [GO:0008360]; regulation of epidermal cell differentiation [GO:0045604]; regulation of epidermal cell division [GO:0010482]; regulation of trichome morphogenesis [GO:2000039]; trichome branching [GO:0010091],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in cotyledons, leaves, roots, stems and floral buds. {ECO:0000269|PubMed:11889033, ECO:0000269|PubMed:11889034, ECO:0000269|PubMed:21801251}. locus:2025376; AT1G01510 D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain NA NA NA NA NA NA NA ENOG411EK4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31) (Fragment) A0A0P0XMK6 A0A0P0XMK6_ORYSJ Os09g0419600 OSNPB_090419600 ENOG411EK4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EK4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os04g0131500 protein (Fragment) A0A0P0W693 A0A0P0W693_ORYSJ Os04g0131500 OSNPB_040131500 ENOG411EK4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EK4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EK4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Viral movement protein (MP) NA NA NA NA NA NA NA ENOG411EK4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os05g0380700 protein (Fragment) A0A0N7KKP1 A0A0N7KKP1_ORYSJ Os05g0380700 OSNPB_050380700 ENOG411EK4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EK4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EK4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411DQUU SAC4,SAC3,SAC2,SAC1 Q7XZU1,Q7XZU2,Q94A27,Q7XZU3,F4IXV2,A0A1I9LQ31,A0A178VL78 SAC4_ARATH,SAC3_ARATH,SAC2_ARATH,SAC1_ARATH,F4IXV2_ARATH,A0A1I9LQ31_ARATH,A0A178VL78_ARATH Phosphoinositide phosphatase SAC4 (AtSAC4) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC4) (Protein SUPPRESSOR OF ACTIN 4) (SAC domain protein 4),Phosphoinositide phosphatase SAC3 (AtSAC3) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC3) (Protein SUPPRESSOR OF ACTIN 3) (SAC domain protein 3),Phosphoinositide phosphatase SAC2 (AtSAC2) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC2) (Protein SUPPRESSOR OF ACTIN 2) (SAC domain protein 2),Phosphoinositide phosphatase SAC1 (AtSAC1) (EC 3.1.3.-) (Factor-induced gene 4-like protein) (AtFIG4) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC1) (Protein FRAGILE FIBER 7) (Protein SUPPRESSOR OF ACTIN 1) (SAC domain protein 1),Phosphoinositide phosphatase family protein Defective interfascicular fiber cells in infloresnce stems. Decrease in cell wall synthesis reduction in cell elongation and alteration in the normal organization of the actin cytoskeleton. Global change in plant architecture. Short roots; Short hypocotyl; Semi-dwarf; Crooked inflorescence stems; Abnormal trichome morphology; Abnormal pavement cell morphology-Z. Ye-2005 FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). {ECO:0000250}.,FUNCTION: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for normal cell morphogenesis, cell wall synthesis, and actin organization. {ECO:0000269|PubMed:15805481}. ARA:AT5G20840-MONOMER;,ARA:AT3G43220-MONOMER;,ARA:AT3G14205-MONOMER;,ARA:AT1G22620-MONOMER; R-ATH-1660514;R-ATH-1660516;R-ATH-1660517; 3.1.3.- 94047,92747,91632,102812,82337,92103,71352 Phosphoinositide phosphatase SAC4 (AtSAC4) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC4) (Protein SUPPRESSOR OF ACTIN 4) (SAC domain protein 4),Phosphoinositide phosphatase SAC3 (AtSAC3) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC3) (Protein SUPPRESSOR OF ACTIN 3) (SAC domain protein 3),Phosphoinositide phosphatase SAC2 (AtSAC2) (EC 3.1.3.-) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC2) (Protein SUPPRESSOR OF ACTIN 2) (SAC domain protein 2),Phosphoinositide phosphatase SAC1 (AtSAC1) (EC 3.1.3.-) (Factor-induced gene 4-like protein) (AtFIG4) (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC1) (Protein FRAGILE FIBER 7) (Protein SUPPRESSOR OF ACTIN 1) (SAC domain protein 1),Phosphoinositide phosphatase family protein plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; phosphoric ester hydrolase activity [GO:0042578]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; vacuole organization [GO:0007033],vacuolar membrane [GO:0005774]; phosphoric ester hydrolase activity [GO:0042578]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; vacuole organization [GO:0007033],Golgi apparatus [GO:0005794]; vacuolar membrane [GO:0005774]; phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [GO:0043813]; cytoskeleton organization [GO:0007010]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; plant-type cell wall biogenesis [GO:0009832]; unidimensional cell growth [GO:0009826]; vacuole organization [GO:0007033],integral component of membrane [GO:0016021]; phosphoric ester hydrolase activity [GO:0042578]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; vacuole organization [GO:0007033],phosphoric ester hydrolase activity [GO:0042578]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; vacuole organization [GO:0007033] TISSUE SPECIFICITY: Ubiquitous with a higher level of expression in young seedlings than in other tissues. {ECO:0000269|PubMed:12805586}.,TISSUE SPECIFICITY: Ubiquitous with higher expression level in both young elongating and nonelongating stems. Detected in vascular tissues. {ECO:0000269|PubMed:12805586, ECO:0000269|PubMed:15805481}. locus:2147082;,locus:2084711;,locus:505006345;,locus:2009477; AT5G20840,AT3G43220,AT3G14205,AT1G22620 Phosphoinositide phosphatase family protein Os03g0182400 protein (SacIy domain containing protein, expressed) (cDNA clone:J013151A15, full insert sequence),Os08g0109100 protein (Putative sac domain-containing inositol phosphatase 3) (cDNA clone:J033105A05, full insert sequence),Os10g0390900 protein,Os08g0109100 protein (Fragment),Os06g0355150 protein (Fragment) Q10QV1,Q6ZC72,A0A0P0XU74,A0A0P0XBF4,A0A0P0WWR4 Q10QV1_ORYSJ,Q6ZC72_ORYSJ,A0A0P0XU74_ORYSJ,A0A0P0XBF4_ORYSJ,A0A0P0WWR4_ORYSJ LOC_Os03g08430 Os03g0182400 OSNPB_030182400,P0007D08.10-1 Os08g0109100 OSNPB_080109100,Os10g0390900 OSNPB_100390900,Os08g0109100 OSNPB_080109100,Os06g0355150 OSNPB_060355150 ENOG411DWX1 Q9SKF0 Q9SKF0_ARATH Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Putative N-acetylglucosaminyltransferase) R-ATH-975574; 42311 Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Putative N-acetylglucosaminyltransferase) integral component of membrane [GO:0016021]; beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity [GO:0003830]; protein N-linked glycosylation [GO:0006487] locus:2042280; AT2G13290 glycosyl transferase family 17 protein Glycosyl transferase family 17 protein, putative, expressed (Os12g0611900 protein) (cDNA clone:J033025O17, full insert sequence) Q2QMA5 Q2QMA5_ORYSJ Os12g0611900 LOC_Os12g41780 Os12g0611900 OsJ_36843 OSNPB_120611900 ENOG411E9KZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0116000 protein (Putative rust resistance kinase Lr10),Os01g0117200 protein (Putative rust resistance kinase Lr10) (cDNA clone:J013020P18, full insert sequence),Os01g0116200 protein (Putative rust resistance kinase Lr10) (cDNA clone:J033074L11, full insert sequence),Os01g0114450 protein,Os01g0114400 protein,Os01g0113400 protein (Fragment),Os01g0113700 protein Q7F7M1,Q5ZE77,Q9FE99,A2ZNI8,A0A0N7KC78,A0A0P0UY10,A0A0P0UXV9 Q7F7M1_ORYSJ,Q5ZE77_ORYSJ,Q9FE99_ORYSJ,A2ZNI8_ORYSJ,A0A0N7KC78_ORYSJ,A0A0P0UY10_ORYSJ,A0A0P0UXV9_ORYSJ Os01g0116000 OSNPB_010116000 P0463F06.34 P0698G03.3,Os01g0117200 OSNPB_010117200 P0494A10.2 P0698G03.30,Os01g0116200 Os01g0116200 OsJ_00141 OSNPB_010116200 P0463F06.47 P0698G03.16,Os01g0114450 OsJ_00121 OSNPB_010114450,Os01g0114400 OSNPB_010114400,Os01g0113400 OSNPB_010113400,Os01g0113700 OSNPB_010113700 ENOG411EC6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411DYIQ PAP11,PAP19,PAP5 Q9SI18,Q9LX83,Q9C927 PPA11_ARATH,PPA19_ARATH,PPA5_ARATH Purple acid phosphatase 11 (EC 3.1.3.2),Purple acid phosphatase 19 (EC 3.1.3.2),Purple acid phosphatase 5 (EC 3.1.3.2) ARA:AT2G18130-MONOMER;,ARA:AT3G46120-MONOMER;,ARA:AT1G52940-MONOMER; 3.1.3.2 50362,44053,45420 Purple acid phosphatase 11 (EC 3.1.3.2),Purple acid phosphatase 19 (EC 3.1.3.2),Purple acid phosphatase 5 (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:16244908}. locus:2053149;,locus:2075341;,locus:2011501; AT2G18130,AT3G46120,AT1G52940 Purple acid phosphatase NA NA NA NA NA NA NA ENOG411DYIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Os06g0654900 protein A0A0P0WZZ8 A0A0P0WZZ8_ORYSJ Os06g0654900 OSNPB_060654900 ENOG411DYIU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13-beta-glucan synthase component Os01g0533000 protein (Fragment) A0A0P0V3J9 A0A0P0V3J9_ORYSJ Os01g0533000 OSNPB_010533000 ENOG411DYIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13-beta-glucan synthase component NA NA NA NA NA NA NA ENOG411DYIJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA type I inositol-145-trisphosphate 5-phosphatase CVP2-like NA NA NA NA NA NA NA ENOG411DYIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dual specificity phosphatase catalytic domain Os06g0152000 protein A0A0P0WT25 A0A0P0WT25_ORYSJ Os06g0152000 OSNPB_060152000 ENOG411DYIH Q8L517,Q5XET7,F4JKH5 Q8L517_ARATH,Q5XET7_ARATH,F4JKH5_ARATH AFG1-like ATPase family protein (Uncharacterized protein At4g30490),AFG1-like ATPase family protein (At4g28070),AFG1-like ATPase family protein 56535,53245,52207 AFG1-like ATPase family protein (Uncharacterized protein At4g30490),AFG1-like ATPase family protein (At4g28070),AFG1-like ATPase family protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516],ATP binding [GO:0005524] locus:2118786;,locus:2133007; AT4G30490,AT4G28070 lactation elevated protein Os11g0302900 protein (Fragment),Os08g0265500 protein,Os08g0265401 protein,Os08g0265450 protein Q0IT66,A0A0P0XDP0,A0A0P0XDT7,A0A0P0XDP6 Q0IT66_ORYSJ,A0A0P0XDP0_ORYSJ,A0A0P0XDT7_ORYSJ,A0A0P0XDP6_ORYSJ Os11g0302900 OSNPB_110302900,Os08g0265500 OSNPB_080265500,Os08g0265401 OSNPB_080265401,Os08g0265450 OSNPB_080265450 ENOG411DYI7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA voltage-gated Ca2 channel alpha subunit NA NA NA NA NA NA NA ENOG411E64I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ctr copper transporter family Copper transporter 4 (OsCOPT4) Q10KT6 COPT4_ORYSJ COPT4 Os03g0370800 LOC_Os03g25470 FUNCTION: Involved in the transport of copper. {ECO:0000250}. ENOG411E64J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC Os09g0521700 protein (cDNA clone:001-118-F04, full insert sequence),Os09g0521700 protein,Os12g0258101 protein,Os09g0521750 protein Q64MA6,Q64MA5,A0A0P0Y8P8,A0A0P0XQ19 Q64MA6_ORYSJ,Q64MA5_ORYSJ,A0A0P0Y8P8_ORYSJ,A0A0P0XQ19_ORYSJ Os09g0521700 Os09g0521700 OSJNOa273B05.4-2 OSNPB_090521700,OSJNOa273B05.4-1 Os09g0521700 OSNPB_090521700,Os12g0258101 OSNPB_120258101,Os09g0521750 OSNPB_090521750 ENOG411E8B9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8BP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caspase domain NA NA NA NA NA NA NA ENOG411EJK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIH9 F4IFT7 F4IFT7_ARATH Uncharacterized protein 17847 Uncharacterized protein locus:6530298184; AT2G27389 NA NA NA NA NA NA NA NA ENOG411EIH6 Q9LFI9 Q9LFI9_ARATH Cysteine proteinases superfamily protein (Uncharacterized protein F2K13_290) 12763 Cysteine proteinases superfamily protein (Uncharacterized protein F2K13_290) cysteine-type peptidase activity [GO:0008234] locus:2148251; AT5G17140 Inherit from KOG: cathepsin NA NA NA NA NA NA NA ENOG411EIH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHS B6EUC4,B3H4U9 B6EUC4_ARATH,B3H4U9_ARATH Zinc finger C-x8-C-x5-C-x3-H type family protein 50377,68852 Zinc finger C-x8-C-x5-C-x3-H type family protein metal ion binding [GO:0046872] locus:2013758; AT1G29560 Inherit from KOG: zinc finger NA NA NA NA NA NA NA ENOG411EIHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EIHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411ED7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411ED7P TAF14 F4IPK2 TAF14_ARATH Transcription initiation factor TFIID subunit 14 (Protein AF-9 homolog b) (TBP-associated factor 14) (AtTAF14) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with TAF14B (PubMed:21282526). Decreased FLC expression leading to earlier transition from vegetative to reproductive phase (Ref.7). Taf14 and taf14b double mutants show a pleiotropic phenotype that includes small size and abnormal leaf morphology (PubMed:21282526). Taf14 and taf14b double mutants flowers significantly earlier than single mutants under both long days and short days conditions (Ref.7). {ECO:0000269|PubMed:21282526, ECO:0000269|Ref.7}. FUNCTION: Negative regulator of flowering controlling the H4K5 acetylation levels in the FLC and FT chromatin. Positively regulates FLC expression. Component of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of a NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. {ECO:0000269|PubMed:23017898, ECO:0000269|Ref.7}. 30363 Transcription initiation factor TFIID subunit 14 (Protein AF-9 homolog b) (TBP-associated factor 14) (AtTAF14) cytoplasm [GO:0005737]; NuA4 histone acetyltransferase complex [GO:0035267]; nucleus [GO:0005634]; cell differentiation [GO:0030154]; flower development [GO:0009908]; histone H4-K5 acetylation [GO:0043981]; regulation of flower development [GO:0009909]; regulation of photoperiodism, flowering [GO:2000028]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves, inflorescence and flowering tissues. {ECO:0000269|PubMed:15527982, ECO:0000269|PubMed:23017898}. locus:2060938; AT2G18000 YEATS family NA NA NA NA NA NA NA ENOG411ED7Q Q9C864 Q9C864_ARATH Aspartyl protease family protein (Chloroplast nucleoid DNA binding protein, putative) (Eukaryotic aspartyl protease family protein) 47908 Aspartyl protease family protein (Chloroplast nucleoid DNA binding protein, putative) (Eukaryotic aspartyl protease family protein) aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2206184; AT1G31450 Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411ED7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQ8J SYD F4IHS2,A0A1P8B2Y3,A0A1P8B2X1 SYD_ARATH,A0A1P8B2Y3_ARATH,A0A1P8B2X1_ARATH Chromatin structure-remodeling complex protein SYD (EC 3.6.4.-) (ATP-dependent helicase SYD) (Protein CHROMATIN REMODELING 3) (Protein SPLAYED),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: Precocious transition from inflorescence to flower formation and impaired maintenance of the shoot apical meristem (SAM) during the reproductive phase. Abnormal flowers with splayed open first-whorl sepals due to outward bending of the pointy sepal tips. Reduced male fertility and reduced anther dehiscence. Partially unfused at the tip fourth-whorl carpels, with stigmatic tissue missing or placed internal to the carpel tip, leading to funnel shaped carpels. Female sterility ovule growth arrest at megagametogenesis. Fused cotyledons. Impaired expression of PDF1.2a, leading to reduced ethylene (ET) and jasmonic acid (JA) signaling. Reduced resistance toward B. cinerea. {ECO:0000269|PubMed:11818058, ECO:0000269|PubMed:15833920, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17293567, ECO:0000269|PubMed:19079584, ECO:0000269|PubMed:22323601}. Embryo lethal embryos arrest at early heart stage.,Strongly enhanced cotyledon fusion phenotype of cuc1-1. Short inflorescence stems; Decreased branching; Slow growth; Small, upward-bending leaves; Abnormal floral organ morphology, position, and number; Sterile; Premature SAM termination-E. Meyerowitz-2002 FUNCTION: Catalytic component of the chromatin structure-remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls stem cell fate via the transcription regulation of WUS in the shoot apical meristem, by modulating its promoter. LFY-dependent repressor of the meristem identity switch from vegetative to reproductive development probably by modulating chromatin state. Involved in the regulation of floral homeotic gene expression in response to environmental stimuli. Required for carpel and ovule development, and for cotyledon separation via the regulation of CUC2 transcription. Regulates the promoters of several genes downstream of the jasmonate (JA) and ethylene (ET) signaling pathways. Required for resistance against the necrotrophic pathogen B.cinerea but not the biotrophic pathogen P.syringae. {ECO:0000269|PubMed:11818058, ECO:0000269|PubMed:15833920, ECO:0000269|PubMed:16640604, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17293567, ECO:0000269|PubMed:19079584, ECO:0000269|PubMed:22323601}. R-ATH-1266695;R-ATH-3247509; 3.6.4.- 389864,386483,389935 Chromatin structure-remodeling complex protein SYD (EC 3.6.4.-) (ATP-dependent helicase SYD) (Protein CHROMATIN REMODELING 3) (Protein SPLAYED),P-loop containing nucleoside triphosphate hydrolases superfamily protein cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; histone binding [GO:0042393]; ATP-dependent chromatin remodeling [GO:0043044]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; flower development [GO:0009908]; organ boundary specification between lateral organs and the meristem [GO:0010199]; regulation of defense response to fungus [GO:1900150]; regulation of ethylene-activated signaling pathway [GO:0010104]; regulation of gene expression, epigenetic [GO:0040029]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ATP binding [GO:0005524]; histone binding [GO:0042393]; hydrolase activity [GO:0016787]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Mostly expressed in rapidly dividing cells in the vegetative, inflorescence, and root meristems, as well as in young leaf and flower primordia. Detected in epidermis cells (at protein level). Isoform 1 is predominantly found in seedlings whereas isoform 2 is present in both seedlings and inflorescences (at protein level). {ECO:0000269|PubMed:11818058, ECO:0000269|PubMed:15276459, ECO:0000269|PubMed:16640604}. locus:2062840; AT2G28290 SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411DQ8Y PEX19-1,PEX19-2 Q9SRQ3,Q94EI3,A0A1P8BFP6 PE191_ARATH,PE192_ARATH,A0A1P8BFP6_ARATH Peroxisome biogenesis protein 19-1 (Peroxin-19-1) (AtPEX19-1) (Peroxisomal membrane protein import receptor PEX19-1),Peroxisome biogenesis protein 19-2 (Peroxin-19-2) (AtPEX19-2) (Peroxisomal membrane protein import receptor PEX19-2),Peroxin 19-2 FUNCTION: Contributes to morphology determination of peroxisomes, but not to import of peroxisomal matrix proteins (PubMed:16923726, PubMed:17478547). Required for proper post-translational import and stabilization of peroxisomal membrane proteins (PMPs) (PubMed:16923726, PubMed:17478547). Acts as a cytosolic import receptor for PMPs and delivers them to the docking factor PEX3 at the peroxisomal membrane for subsequent insertion into the membrane (PubMed:17478547). Required for transport of APEM9 to peroxisome membranes (PubMed:21487094). Acts as a chaperone in stabilizing or maintaining PMPs in the lipid bilayer (PubMed:17478547). {ECO:0000269|PubMed:16923726, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:21487094}.,FUNCTION: Contributes to morphology determination of peroxisomes, but not to import of peroxisomal matrix proteins. Required for proper post-translational import and stabilization of peroxisomal membrane proteins (PMPs). Acts as a cytosolic import receptor for PMPs and delivers them to the docking factor PEX3 at the peroxisomal membrane for subsequent insertion into the membrane. Acts as a chaperone in stabilizing or maintaining PMPs in the lipid bilayer. {ECO:0000269|PubMed:16923726, ECO:0000269|PubMed:17478547}. R-ATH-1369062; 28289,27841,21998 Peroxisome biogenesis protein 19-1 (Peroxin-19-1) (AtPEX19-1) (Peroxisomal membrane protein import receptor PEX19-1),Peroxisome biogenesis protein 19-2 (Peroxin-19-2) (AtPEX19-2) (Peroxisomal membrane protein import receptor PEX19-2),Peroxin 19-2 cytosol [GO:0005829]; peroxisomal membrane [GO:0005778]; identical protein binding [GO:0042802]; peroxisome membrane targeting sequence binding [GO:0033328]; peroxisome organization [GO:0007031]; protein transport [GO:0015031],cytosol [GO:0005829]; peroxisomal membrane [GO:0005778]; peroxisome membrane targeting sequence binding [GO:0033328]; peroxisome organization [GO:0007031]; protein targeting to peroxisome [GO:0006625],peroxisome [GO:0005777] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers, siliques and stems. Highest expression in stems and flowers. {ECO:0000269|PubMed:16923726}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers, siliques and stems. Highest expression in roots and leaves. {ECO:0000269|PubMed:16923726}. locus:2099694;,locus:2151386; AT3G03490,AT5G17550 peroxisomal biogenesis factor Os02g0661000 protein A0A0N7KFT8 A0A0N7KFT8_ORYSJ Os02g0661000 OSNPB_020661000 ENOG411DQ89 Q9C9T0,A0A1P8AMK1 Q9C9T0_ARATH,A0A1P8AMK1_ARATH Ssu72-like family protein (Uncharacterized protein At1g73820) (Uncharacterized protein At1g73820/F25P22_24) (Uncharacterized protein F25P22.24),Ssu72-like family protein 22294,23933 Ssu72-like family protein (Uncharacterized protein At1g73820) (Uncharacterized protein At1g73820/F25P22_24) (Uncharacterized protein F25P22.24),Ssu72-like family protein chloroplast [GO:0009507]; mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; CTD phosphatase activity [GO:0008420]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; mRNA polyadenylation [GO:0006378]; termination of RNA polymerase II transcription [GO:0006369],nucleus [GO:0005634]; phosphoprotein phosphatase activity [GO:0004721]; mRNA processing [GO:0006397] locus:2027789; AT1G73820 RNA polymerase II subunit A C-terminal domain phosphatase Os12g0168200 protein (Ssu72-like protein, expressed) (cDNA clone:J023025N02, full insert sequence) Q2QX64 Q2QX64_ORYSJ Os12g0168200 LOC_Os12g07050 Os12g0168200 OSNPB_120168200 ENOG411DQ80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RF-1 domain NA NA NA NA NA NA NA ENOG411EJN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 5 (OsTIFY5) (Jasmonate ZIM domain-containing protein 2) (OsJAZ2),Os07g0153000 protein Q69NY7,A0A0P0X2D6 TIF5_ORYSJ,A0A0P0X2D6_ORYSJ TIFY5 JAZ2 Os07g0153000 LOC_Os07g05830 OSJNBb0050B07.2,Os07g0153000 OSNPB_070153000 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411EJN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II 5 kDa protein Os02g0581100 protein Q0E032 Q0E032_ORYSJ Os02g0581100 Os02g0581100 OSNPB_020581100 ENOG411EJN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EJNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC Os02g0307133 protein,Os04g0608750 protein,Os07g0649766 protein,Os04g0608700 protein,Os07g0649733 protein,Os10g0201901 protein,Os10g0201600 protein A0A0N7KF58,A0A0P0WES1,A0A0P0X9Q1,A0A0P0WEJ4,A0A0P0X9T9,A0A0P0XSI3,A0A0N7KRK0 A0A0N7KF58_ORYSJ,A0A0P0WES1_ORYSJ,A0A0P0X9Q1_ORYSJ,A0A0P0WEJ4_ORYSJ,A0A0P0X9T9_ORYSJ,A0A0P0XSI3_ORYSJ,A0A0N7KRK0_ORYSJ Os02g0307133 OSNPB_020307133,Os04g0608750 OSNPB_040608750,Os07g0649766 OSNPB_070649766,Os04g0608700 OSNPB_040608700,Os07g0649733 OSNPB_070649733,Os10g0201901 OSNPB_100201901,Os10g0201600 OSNPB_100201600 ENOG411EJNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EJND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain NA NA NA NA NA NA NA ENOG411EJNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABA/WDS induced protein NA NA NA NA NA NA NA ENOG411EJNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear autoantigenic sperm protein (Histone-binding) NA NA NA NA NA NA NA ENOG411EJNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411EJNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRYQ GLYR2,GLYR1 F4I907,Q9LSV0,A0A1P8AS42,A0A1I9LPQ6 GLYR2_ARATH,GLYR1_ARATH,A0A1P8AS42_ARATH,A0A1I9LPQ6_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic (AtGLYR2) (AtGR2) (SSA reductase 2) (EC 1.1.1.79) (EC 1.1.1.n11),Glyoxylate/succinic semialdehyde reductase 1 (AtGLYR1) (AtGR1) (SSA reductase 1) (EC 1.1.1.79) (EC 1.1.1.n11) (Gamma-hydroxybutyrate dehydrogenase) (AtGHBDH),Glyoxylate reductase 2,Glyoxylate reductase 1 FUNCTION: Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May function in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively. {ECO:0000269|PubMed:18495639}.,FUNCTION: Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May function in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively. {ECO:0000269|PubMed:12882961, ECO:0000269|Ref.7, ECO:0000269|Ref.8}. MISCELLANEOUS: Although GLYR2 acts as an aldo/keto reductase, it has no significant homology with either mammalian and bacterial NADPH-dependent SSA reductases.,MISCELLANEOUS: Follows a sequentially ordered Bi-Bi catalytic mechanism involving the complexation of NADPH to the enzyme before glyoxylate or SSA, and the release of NADP(+) before glycolate or gamma-hydroxybutyrate, respectively. Although GLYR1 acts as an aldo/keto reductase, it has no significant homology with either mammalian and bacterial NADPH-dependent SSA reductases. ARA:AT3G25530-MONOMER; 1.1.1.79;,1.1.1.26;1.1.1.61;1.1.1.79; 1.1.1.79; 1.1.1.n11 37781,30692,31282,21982 Glyoxylate/succinic semialdehyde reductase 2, chloroplastic (AtGLYR2) (AtGR2) (SSA reductase 2) (EC 1.1.1.79) (EC 1.1.1.n11),Glyoxylate/succinic semialdehyde reductase 1 (AtGLYR1) (AtGR1) (SSA reductase 1) (EC 1.1.1.79) (EC 1.1.1.n11) (Gamma-hydroxybutyrate dehydrogenase) (AtGHBDH),Glyoxylate reductase 2,Glyoxylate reductase 1 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; glyoxylate reductase (NADP) activity [GO:0030267]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616],cytosol [GO:0005829]; 3-hydroxybutyrate dehydrogenase activity [GO:0003858]; glyoxylate reductase (NADP) activity [GO:0030267]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; response to oxidative stress [GO:0006979],NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616] locus:2007923;,locus:2094518; AT1G17650,AT3G25530 oxidoreductase GLYR1-like Gamma hydroxybutyrate dehydrogenase-like protein (Os02g0562700 protein) (Putative gamma hydroxybutyrate dehydrogenase) (cDNA clone:006-212-E09, full insert sequence) (cDNA clone:006-308-H04, full insert sequence) (cDNA clone:J023114G06, full insert sequence),Os01g0574600 protein (Oxidoreductase-like) (cDNA clone:J013000J16, full insert sequence) Q84VC8,Q656T5 Q84VC8_ORYSJ,Q656T5_ORYSJ Os02g0562700 Os02g0562700 OJ1712_E04.5 OsJ_07161 OSNPB_020562700,Os01g0574600 B1151A10.27 OsJ_02307 OSNPB_010574600 ENOG411DRYP Q0WVJ0,A0A1P8BD07,A0A1P8BC68,F4JZQ6 Q0WVJ0_ARATH,A0A1P8BD07_ARATH,A0A1P8BC68_ARATH,F4JZQ6_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Putative receptor-like kinase),Protein kinase family protein,Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 78634,79414,69025,78852 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Putative receptor-like kinase),Protein kinase family protein,Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; response to stress [GO:0006950],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2143094;,locus:2180677; AT5G12000,AT5G26150 U-box domain-containing protein Os02g0218400 protein (Putative serine threonine kinase),Os01g0581400 protein (Serine threonine kinase 1-like),Os02g0763501 protein,Os04g0297933 protein,Os02g0284300 protein (Fragment) Q6Z6L3,Q5ZB74,A0A0P0VQ33,A0A0P0W8W8,A0A0P0VHM7 Q6Z6L3_ORYSJ,Q5ZB74_ORYSJ,A0A0P0VQ33_ORYSJ,A0A0P0W8W8_ORYSJ,A0A0P0VHM7_ORYSJ Os02g0218400 Os02g0218400 OsJ_05907 OSNPB_020218400 P0027A02.9,Os01g0581400 Os01g0581400 B1097D05.17 OSNPB_010581400,Os02g0763501 OSNPB_020763501,Os04g0297933 OSNPB_040297933,Os02g0284300 OSNPB_020284300 ENOG411DRYS ACS B9DGD6,A0A1P8BCV2 ACS_ARATH,A0A1P8BCV2_ARATH Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal (EC 6.2.1.1) (Acetate--CoA ligase) (Acetyl-CoA synthetase),Acetyl-coenzyme A synthetase (EC 6.2.1.1) FUNCTION: Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation. May play a limited role in the biosynthesis of lipids. {ECO:0000269|PubMed:10859180, ECO:0000269|PubMed:12051672}. ARA:AT5G36880-MONOMER; R-ATH-71384; 6.2.1.1; 6.2.1.1 81889,67598 Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal (EC 6.2.1.1) (Acetate--CoA ligase) (Acetyl-CoA synthetase),Acetyl-coenzyme A synthetase (EC 6.2.1.1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; glyoxysome [GO:0009514]; acetate-CoA ligase activity [GO:0003987]; AMP binding [GO:0016208]; ATP binding [GO:0005524]; acetate metabolic process [GO:0006083]; acetyl-CoA biosynthetic process from acetate [GO:0019427]; fatty acid metabolic process [GO:0006631],acetate-CoA ligase activity [GO:0003987]; AMP binding [GO:0016208]; ATP binding [GO:0005524]; acetyl-CoA biosynthetic process from acetate [GO:0019427] DEVELOPMENTAL STAGE: In the forming silique, expressed in the funiculus and ovule from 1 to 3 day after flowering (DAF). At 3 DAF, expressed in the globular embryo, but expression decreases at 5 DAF and almost disappears at 7 DAF in the embryo. By 1 d after imbibition, expressed in the tip of seed radicle and then in the root tip up to 4 d after imbibition. {ECO:0000269|PubMed:10859180}. TISSUE SPECIFICITY: Expressed in leaves, flower buds and young flowers. {ECO:0000269|PubMed:10859180}. locus:2149104; AT5G36880 synthetase Acetyl-coenzyme A synthetase (EC 6.2.1.1),Os02g0525900 protein (Fragment) Q6H798,A0A0P0VJQ7,A0A0P0WAB9 Q6H798_ORYSJ,A0A0P0VJQ7_ORYSJ,A0A0P0WAB9_ORYSJ Os02g0525900 OsJ_06966 OSNPB_020525900 P0415B12.41 P0458B05.3,Os02g0525900 OSNPB_020525900,Os04g0404800 OSNPB_040404800 ENOG411DRYR MRL7L Q9SKB6 MRL7L_ARATH Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic (Protein MESOPHYLL-CELL RNAI LIBRARY LINE 7-LIKE) (AtMRL7-L) (Protein SUPPRESSOR OF VARIEGATION 4-LIKE) DISRUPTION PHENOTYPE: Seedling lethality due to deficiency in chloroplast development. {ECO:0000269|PubMed:24111559}. FUNCTION: Plays an essential role in early steps of chloroplast development (PubMed:21515910, PubMed:24111559). Involved in the regulation of plastid gene expression (PubMed:21515910, PubMed:24111559). Required for the proper function of the plastid transcriptional machinery and protein accumulation in thylakoid membranes. May function as molecular chaperone to ensure proper organization of the nucleoids in chloroplasts (PubMed:24111559). {ECO:0000269|PubMed:21515910, ECO:0000269|PubMed:24111559}. 40540 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic (Protein MESOPHYLL-CELL RNAI LIBRARY LINE 7-LIKE) (AtMRL7-L) (Protein SUPPRESSOR OF VARIEGATION 4-LIKE) chloroplast stroma [GO:0009570]; chloroplast organization [GO:0009658]; regulation of transcription, DNA-templated [GO:0006355] locus:2045208; AT2G31840 NA Thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic (OsMRL7-L) Q0DI48 MRL7L_ORYSJ MRL7L Os05g0417200 LOC_Os05g34470 OsJ_18562 OSJNBa0084P24.17 P0579A05.3 FUNCTION: Plays an essential role in early steps of chloroplast development. Involved in the regulation of plastid gene expression. Required for the proper function of the plastid transcriptional machinery and protein accumulation in thylakoid membranes. May function as molecular chaperone to ensure proper organization of the nucleoids in chloroplasts. {ECO:0000250|UniProtKB:Q9SKB6}. ENOG411DRYU Q9LNE1,A0A1P8AV86 Q9LNE1_ARATH,A0A1P8AV86_ARATH At1g06060 (LisH and RanBPM domains containing protein) (T21E18.11 protein) (Uncharacterized protein At1g06060),LisH and RanBPM domains containing protein 24556,24575 At1g06060 (LisH and RanBPM domains containing protein) (T21E18.11 protein) (Uncharacterized protein At1g06060),LisH and RanBPM domains containing protein locus:2198796; AT1G06060 Pfam:RanBPM_CRA Os01g0775600 protein (cDNA clone:001-009-H03, full insert sequence) (cDNA clone:J033121A05, full insert sequence) Q5ZAY8 Q5ZAY8_ORYSJ Os01g0775600 OSNPB_010775600 P0413G02.7 ENOG411DRYT APC2 F4KBU1 F4KBU1_ARATH Mitochondrial substrate carrier family protein 55659 Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; ADP transmembrane transporter activity [GO:0015217]; AMP transmembrane transporter activity [GO:0080122]; ATP transmembrane transporter activity [GO:0005347]; calcium ion binding [GO:0005509]; phosphate ion transmembrane transporter activity [GO:0015114]; ADP transport [GO:0015866]; AMP transport [GO:0080121]; ATP transport [GO:0015867]; phosphate ion transmembrane transport [GO:0035435] locus:2157423; AT5G51050 Calcium-binding mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411DRYW MS5 Q9SUC3,Q9FKV5 MS5_ARATH,MS5L1_ARATH Protein POLLENLESS 3 (Protein MALE STERILE 5) (Protein THREE-DIVISION MUTANT 1),Protein POLLENLESS 3-LIKE 1 DISRUPTION PHENOTYPE: Sterile plants with abnormal formation of polyads during microsporogenesis, tetrads with more than four pools of chromosomes, after male meiosis, due to an unusual and abnormal cell division without further DNA or chromosome replication after meiosis I and II, and leading to collapsed pollen in flattened anthers (PubMed:9750346, Ref.2). Chromatin recondensation and stretching after meiosis II characterized by a dense microtubule network connecting haploid nuclei in the tetrad stage rearranged into four bipolar spindles as chromatids recondense, as if haploid nuclei entered a third meiotic division (PubMed:9451956, PubMed:21119056). {ECO:0000269|PubMed:21119056, ECO:0000269|PubMed:9451956, ECO:0000269|PubMed:9750346, ECO:0000269|Ref.2}. Male sterile-E. Dennis-1998 FUNCTION: Essential for male fertility, especially for microspore and pollen grain production (PubMed:9750346, Ref.2). Involved in the regulation of cell division after male meiosis I and II to facilitate exit from meiosis and transition to G1 (PubMed:9451956, PubMed:21119056). {ECO:0000269|PubMed:21119056, ECO:0000269|PubMed:9451956, ECO:0000269|PubMed:9750346, ECO:0000269|Ref.2}.,FUNCTION: Probably involved in the regulation of cell division. {ECO:0000250|UniProtKB:Q9SUC3}. 49216,53281 Protein POLLENLESS 3 (Protein MALE STERILE 5) (Protein THREE-DIVISION MUTANT 1),Protein POLLENLESS 3-LIKE 1 nucleus [GO:0005634]; cell division [GO:0051301]; male meiotic nuclear division [GO:0007140]; meiotic cell cycle [GO:0051321]; microsporogenesis [GO:0009556],nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301] DEVELOPMENTAL STAGE: Specifically localized within meiotic cells in the anther locules, transiently, only during late meiosis. {ECO:0000269|Ref.2}. TISSUE SPECIFICITY: Expressed at low levels mostly in floral organs during meiosis. Also barely detectable in leaves, stems and roots. {ECO:0000269|PubMed:9750346, ECO:0000269|Ref.2}.,TISSUE SPECIFICITY: Expressed in floral and vegetative organs. Also barely detectable in leaves and stems. {ECO:0000269|Ref.4}. locus:2133099;,locus:2158750; AT4G20900,AT5G44330 Male sterility MS5 NA NA NA NA NA NA NA ENOG411DRYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0660600 protein,Os06g0117800 protein,Os06g0660650 protein A0A0P0X038,A0A0P0WSA3,A0A0P0WZR8 A0A0P0X038_ORYSJ,A0A0P0WSA3_ORYSJ,A0A0P0WZR8_ORYSJ Os06g0660600 OSNPB_060660600,Os06g0117800 OSNPB_060117800,Os06g0660650 OSNPB_060660650 ENOG411DRYY RBOHI,RBOHF Q9SUT8,O48538 RBOHI_ARATH,RBOHF_ARATH Probable respiratory burst oxidase homolog protein I (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHI) (AtRBOHI),Respiratory burst oxidase homolog protein F (EC 1.11.1.-) (EC 1.6.3.-) (Cytochrome b245 beta chain homolog RbohAp108) (NADPH oxidase RBOHF) (AtRBOHF) ABA fails to induce significant nitric acid (NO) production in the guard cells of this double mutant.,DAB staining (H2O2 visualization) greatly reduced compared to wild-type.,Four-weeks old plants have necrotic lesions and callose deposition.,Reduced localized cell death compared to wild-type.,Smaller than wild-type.,Some plants stop growing and die before setting seeds.,Diminution of ion leakage (greater even than that of atrbohD).,Morphologically normal but slightly smaller than wild-type.,No change in pattern of DAB staining (H2O2 visualization) compared to wild-type.,Same phenotype as atrbohF-F3. Semi-dwarf; Resistant to fungal infection-J. Jones-2002 FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide.,FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide. Generates reactive oxygen species (ROS) during incompatible interactions with pathogens and is important in the regulation of the hypersensitive response (HR). Involved in abscisic acid-induced stomatal closing and in UV-B and abscisic acid ROS-dependent signaling. {ECO:0000269|PubMed:11756663, ECO:0000269|PubMed:12773379, ECO:0000269|PubMed:16428598, ECO:0000269|PubMed:16913867, ECO:0000269|PubMed:16961732}. ARA:AT4G11230-MONOMER;,ARA:AT1G64060-MONOMER; R-ATH-3299685;R-ATH-6798695; 1.11.1.-; 1.6.3.- 106952,108418 Probable respiratory burst oxidase homolog protein I (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHI) (AtRBOHI),Respiratory burst oxidase homolog protein F (EC 1.11.1.-) (EC 1.6.3.-) (Cytochrome b245 beta chain homolog RbohAp108) (NADPH oxidase RBOHF) (AtRBOHF) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor [GO:0050664]; peroxidase activity [GO:0004601],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; NAD(P)H oxidase activity [GO:0016174]; peroxidase activity [GO:0004601]; abscisic acid-activated signaling pathway [GO:0009738]; carbohydrate homeostasis [GO:0033500]; defense response by callose deposition [GO:0052542]; ethylene-activated signaling pathway [GO:0009873]; hydrogen peroxide biosynthetic process [GO:0050665]; negative regulation of programmed cell death [GO:0043069]; osmosensory signaling pathway [GO:0007231]; regulation of stomatal movement [GO:0010119]; respiratory burst involved in defense response [GO:0002679]; response to ethylene [GO:0009723] TISSUE SPECIFICITY: Expressed in roots, stems, seedlings, inflorescences, leaves and guard cells. {ECO:0000269|PubMed:12773379, ECO:0000269|PubMed:9490748, ECO:0000269|PubMed:9628030}. locus:2128248;,locus:2024603; AT4G11230,AT1G64060 respiratory burst oxidase Os05g0528000 protein (Putative cytochrome b245 beta chain),Os01g0734200 protein,Os01g0734333 protein,Os01g0734466 protein (Fragment) Q65XC8,A0A0P0V7V7,A0A0P0V7W9,A0A0P0V7W2 Q65XC8_ORYSJ,A0A0P0V7V7_ORYSJ,A0A0P0V7W9_ORYSJ,A0A0P0V7W2_ORYSJ Os05g0528000 Os05g0528000 OJ1187_E11.11 OsJ_19284 OSNPB_050528000,Os01g0734200 OSNPB_010734200,Os01g0734333 OSNPB_010734333,Os01g0734466 OSNPB_010734466 ENOG411DRYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DRYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os01g0950000 protein (Putative glutathione S-transferase) (cDNA clone:002-113-F04, full insert sequence),Os01g0949750 protein (Fragment) Q5JKY3,A0A0P0VCV3 Q5JKY3_ORYSJ,A0A0P0VCV3_ORYSJ Os01g0950000 Os01g0950000 B1147A04.24 OsJ_04766 OSNPB_010950000,Os01g0949750 OSNPB_010949750 ENOG411DRYC BAG4 Q8RX71 BAG4_ARATH BAG family molecular chaperone regulator 4 (Bcl-2-associated athanogene 4) DISRUPTION PHENOTYPE: Early flowering and shorter vegetative and reproductive phases, with more branched roots and inflorescences. Early senescence. Enhanced susceptibility to salt stress. Hypersensitivity to light. {ECO:0000269|PubMed:16636050}. Mutant plants exhibited earlier flowering and shorter vegetative and reproductive phases producing more branched roots and inflorescences compared to wild-type plants. Senescence occurred earlier in mutants than the wild-type plants. Heterozygotes: Increased branching and lateral root number; Early flowering and senescence; Incomplete penetrance of purple leaves; Homozygotes not mentioned-M. Dickman-2006 FUNCTION: Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses. {ECO:0000250}. 29211 BAG family molecular chaperone regulator 4 (Bcl-2-associated athanogene 4) cytosol [GO:0005829]; chaperone binding [GO:0051087]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Detected in stems, leaves, flowers and roots. {ECO:0000269|PubMed:16636050}. locus:2074353; AT3G51780 BAG domain BAG domain containing protein-like (EIP1) (Os01g0831200 protein) (cDNA clone:J023047C12, full insert sequence) Q5N9K2 Q5N9K2_ORYSJ Os01g0831200 Os01g0831200 OSNPB_010831200 P0446G04.34 ENOG411DRYB F4JE17,Q8GXI8,A0A1I9LR33 F4JE17_ARATH,Q8GXI8_ARATH,A0A1I9LR33_ARATH Downstream neighbor of Son,AT3G54750 protein (Downstream neighbor of Son) (Uncharacterized protein At3g54750/T5N23_110) 65314,65227 Downstream neighbor of Son,AT3G54750 protein (Downstream neighbor of Son) (Uncharacterized protein At3g54750/T5N23_110) nucleus [GO:0005634]; nuclear DNA replication [GO:0033260] locus:2102415; AT3G54750 Inherit from NOG: downstream neighbor of Son Expressed protein (Os12g0621700 protein) (cDNA clone:J033044P17, full insert sequence) Q2QM08 Q2QM08_ORYSJ LOC_Os12g42700 Os12g0621700 OSNPB_120621700 ENOG411DRYE Q8GYP6,Q9SSF9,F4IDY2 PPR49_ARATH,PP123_ARATH,F4IDY2_ARATH Pentatricopeptide repeat-containing protein At1g18900,Pentatricopeptide repeat-containing protein At1g74750,Pentatricopeptide repeat (PPR) superfamily protein 95214,94709,98058 Pentatricopeptide repeat-containing protein At1g18900,Pentatricopeptide repeat-containing protein At1g74750,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2027212;,locus:2011211; AT1G18900,AT1G74750 Pentatricopeptide repeat-containing protein Os12g0638900 protein (Pentatricopeptide, putative, expressed),Os12g0638900 protein (Fragment) Q2QLK4,A0A0N7KUF6 Q2QLK4_ORYSJ,A0A0N7KUF6_ORYSJ LOC_Os12g44170 Os12g0638900 OsJ_37016 OSNPB_120638900,Os12g0638900 OSNPB_120638900 ENOG411DRYD AAP3,AAP6 Q39134,P92934 AAP3_ARATH,AAP6_ARATH Amino acid permease 3 (Amino acid transporter AAP3),Amino acid permease 6 (Amino acid transporter AAP6) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:15361541, ECO:0000269|PubMed:18681934}.,DISRUPTION PHENOTYPE: Larger seeds and rosette leaves and increased number of cauline leaves at flowering. Decreased concentration of lysine, phenylalanine, leucine and aspartic acid in the sieve element sap, but no significant effect on aphid feeding behavior or reproduction. {ECO:0000269|PubMed:19755569}. Increased cauline leaf number; Large rosette leaves and seeds-J. Pritchard-2010 FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids. {ECO:0000269|PubMed:7608199}.,FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma. {ECO:0000269|PubMed:8776904}. 52037,53021 Amino acid permease 3 (Amino acid transporter AAP3),Amino acid permease 6 (Amino acid transporter AAP6) integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333]; basic amino acid transport [GO:0015802],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; acidic amino acid transmembrane transporter activity [GO:0015172]; neutral amino acid transmembrane transporter activity [GO:0015175]; symporter activity [GO:0015293]; aspartate transport [GO:0015810]; tryptophan transport [GO:0015827] DEVELOPMENTAL STAGE: Induced in the connective tissue of stamens shortly before dehiscence.,DEVELOPMENTAL STAGE: Expressed at higher levels in sink as compared with source leaves. TISSUE SPECIFICITY: Expressed in the root phloem. Detected in stamens, in cotyledons, and in major veins of mature leaves. {ECO:0000269|PubMed:15361541, ECO:0000269|PubMed:7608199}.,TISSUE SPECIFICITY: Expressed in roots and leaves, and at lower levels in stems and flowers. Found in the xylem parenchyma. {ECO:0000269|PubMed:12244056, ECO:0000269|PubMed:8776904}. locus:2031402;,locus:2168912; AT1G77380,AT5G49630 amino acid Os05g0424000 protein (Putative amino acid transporter),Os07g0134000 protein (Putative amino acid permease) (cDNA clone:001-207-D09, full insert sequence) (cDNA clone:J013046A03, full insert sequence),Os02g0102200 protein (Putative amino acid transporter),Os01g0882800 protein (Putative amino acid carrier),Os07g0134000 protein (Putative amino acid permease),Os07g0134000 protein (Fragment) Q60EP1,Q6ZLK8,Q6YU84,Q8RZP7,Q6ZLK7,A0A0P0X298 Q60EP1_ORYSJ,Q6ZLK8_ORYSJ,Q6YU84_ORYSJ,Q8RZP7_ORYSJ,Q6ZLK7_ORYSJ,A0A0P0X298_ORYSJ Os05g0424000 OJ1212_B02.8 OsJ_18601 OSNPB_050424000,OJ1118_D07.26-1 P0507H12.11-1 Os07g0134000 OSNPB_070134000,Os02g0102200 Os02g0102200 B1370C05.25 OJ1435_F07.15 OsJ_04998 OSNPB_020102200,Os01g0882800 B1065E10.27 OsJ_04310 OSNPB_010882800,OJ1118_D07.26-2 Os07g0134000 P0507H12.11-2 OSNPB_070134000,Os07g0134000 OSNPB_070134000 ENOG411DRYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein OSJNBa0004N05.2 protein (OSJNBb0065L13.14 protein) (Os04g0510600 protein) (cDNA clone:006-205-H02, full insert sequence) Q7X6W1 Q7X6W1_ORYSJ Os04g0510600 OSJNBa0004N05.2 OSJNBb0065L13.14 OSNPB_040510600 ENOG411DRYF Q9M0F7,O82202,A0A1P8B625 Q9M0F7_ARATH,O82202_ARATH,A0A1P8B625_ARATH Extensin-like protein (Leucine-rich repeat (LRR) family protein) (Putative extensin),Leucine-rich repeat (LRR) family protein (Putative disease resistance protein),Leucine-rich repeat (LRR) family protein 44202,42843,40910 Extensin-like protein (Leucine-rich repeat (LRR) family protein) (Putative extensin),Leucine-rich repeat (LRR) family protein (Putative disease resistance protein),Leucine-rich repeat (LRR) family protein locus:2118279;,locus:2051915; AT4G29240,AT2G19780 leucine-rich repeat Os05g0188700 protein (cDNA, clone: J100039I23, full insert sequence) B7FA32 B7FA32_ORYSJ Os05g0188700 OsJ_17398 OSNPB_050188700 ENOG411DRYI A0A1P8B8K0,F4JPJ1 A0A1P8B8K0_ARATH,F4JPJ1_ARATH Urb2/Npa2 family protein 220074,224593 Urb2/Npa2 family protein nucleolus [GO:0005730]; ribosome biogenesis [GO:0042254] locus:2126530; AT4G30150 Urb2/Npa2 family Os03g0203100 protein (Fragment) A0A0P0VUE9 A0A0P0VUE9_ORYSJ Os03g0203100 OSNPB_030203100 ENOG411DRYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0227000 protein,Os04g0226800 protein C7J128,A0A0P0W7S1 C7J128_ORYSJ,A0A0P0W7S1_ORYSJ Os04g0227000 Os04g0227000 OSNPB_040227000,Os04g0226800 OSNPB_040226800 ENOG411DRYK RBOHG,RBOHB,RBOHC,RBOHD,RBOHA Q9SW17,Q9SBI0,O81210,Q9FIJ0,F4HZD8,F4JRU7,F4K6P2 RBOHG_ARATH,RBOHB_ARATH,RBOHC_ARATH,RBOHD_ARATH,F4HZD8_ARATH,F4JRU7_ARATH,F4K6P2_ARATH Putative respiratory burst oxidase homolog protein G (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHG) (AtRBOHG),Respiratory burst oxidase homolog protein B (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHB) (AtRBOHB),Respiratory burst oxidase homolog protein C (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHC) (AtRBOHC) (Protein ROOT HAIR DEFECTIVE 2),Respiratory burst oxidase homolog protein D (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHD) (AtRBOHD),Respiratory burst oxidase-like protein,Riboflavin synthase-like superfamily protein,Respiratory burst oxidase homolog A DISRUPTION PHENOTYPE: Plants have short root hairs and stunted roots. {ECO:0000269|PubMed:12660786}.,DISRUPTION PHENOTYPE: Plants do not accumulate reactive oxygen species during disease-resistance reactions, do not up-regulate UV-B-dependent gene expression and are impaired in abscisic acid-induced stomatal closing and in root growth and seed germination inhibitions. {ECO:0000269|PubMed:15608336}. Mutants fail to after-ripen and show reduced protein oxidation.,Does not produce reactive oxygen species in response to extracellular AtP stimulus.,DAB staining (H2O2 visualization) greatly reduced compared to wild-type.,Diminution of ion leakage.,Morphologically normal but slightly smaller than wild-type.,Peroxide production triggered by Pp Emco5 is greatly reduced but not the typical trailing necrosis.,ABA fails to induce significant nitric acid (NO) production in the guard cells of this double mutant.,Four-weeks old plants have necrotic lesions and callose deposition.,Reduced localized cell death compared to wild-type.,Smaller than wild-type.,Some plants stop growing and die before setting seeds. Complete loss of seed after-ripening-G. Leubner-Metzger-2009,Short root hairs-J. Lynch-2000,Semi-dwarf-J. Jones-2002 FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide.,FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide. Required for H(2)O(2) production in response to K(+) deficiency and for the generation of reactive oxygen species (ROS) that regulate cell expansion through the activation of Ca(2+) channels. {ECO:0000269|PubMed:12660786, ECO:0000269|PubMed:15173595}.,FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide. Involved in the generation of reactive oxygen species (ROS) during incompatible interactions with pathogens and in UV-B and abscisic acid ROS-dependent signaling. Might be required for ROS signal amplification during light stress. {ECO:0000269|PubMed:11756663, ECO:0000269|PubMed:12773379, ECO:0000269|PubMed:15608336, ECO:0000269|PubMed:16428598, ECO:0000269|PubMed:16913867, ECO:0000269|PubMed:17601167}. ARA:AT4G25090-MONOMER;,ARA:AT1G09090-MONOMER;,ARA:AT5G51060-MONOMER;,ARA:AT5G47910-MONOMER; R-ATH-3299685;R-ATH-6798695; 1.6.3.1; 1.11.1.-; 1.6.3.- 96862,96390,102518,103909,71333,95600,95498 Putative respiratory burst oxidase homolog protein G (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHG) (AtRBOHG),Respiratory burst oxidase homolog protein B (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHB) (AtRBOHB),Respiratory burst oxidase homolog protein C (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHC) (AtRBOHC) (Protein ROOT HAIR DEFECTIVE 2),Respiratory burst oxidase homolog protein D (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHD) (AtRBOHD),Respiratory burst oxidase-like protein,Riboflavin synthase-like superfamily protein,Respiratory burst oxidase homolog A cytosolic ribosome [GO:0022626]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor [GO:0050664]; peroxidase activity [GO:0004601],integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; NAD(P)H oxidase activity [GO:0016174]; peroxidase activity [GO:0004601]; response to heat [GO:0009408]; seed germination [GO:0009845],integral component of plasma membrane [GO:0005887]; calcium ion binding [GO:0005509]; NAD(P)H oxidase activity [GO:0016174]; peroxidase activity [GO:0004601]; aerobic respiration [GO:0009060]; response to ATP [GO:0033198]; root epidermal cell differentiation [GO:0010053],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; NAD(P)H oxidase activity [GO:0016174]; peroxidase activity [GO:0004601]; carbohydrate homeostasis [GO:0033500]; defense response to fungus [GO:0050832]; negative regulation of programmed cell death [GO:0043069]; osmosensory signaling pathway [GO:0007231]; reactive oxygen species metabolic process [GO:0072593]; response to heat [GO:0009408]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; NAD(P)H oxidase activity [GO:0016174]; peroxidase activity [GO:0004601],integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor [GO:0050664]; peroxidase activity [GO:0004601] TISSUE SPECIFICITY: In roots, expressed in the epidermis in the proximal regions of the meristem, in the elongation zone, in the differentiation zone and in elongating root hairs. {ECO:0000269|PubMed:12660786, ECO:0000269|PubMed:15173595}.,TISSUE SPECIFICITY: More abundant in roots than in leaves, stems or inflorescences. Expressed in mesophyll and guard cells. {ECO:0000269|PubMed:12773379, ECO:0000269|PubMed:9628030}. locus:2117258;,locus:2036104;,locus:2157348;,locus:2160917; AT4G25090,AT1G09090,AT5G51060,AT5G47910,AT5G07390 respiratory burst oxidase NA NA NA NA NA NA NA ENOG411DRYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class IV NA NA NA NA NA NA NA ENOG411DRYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DELLA protein GAI1-like Os11g0507300 protein A0A0N7KSZ0 A0A0N7KSZ0_ORYSJ Os11g0507300 OSNPB_110507300 ENOG411DRYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0574100 protein A0A0P0X811 A0A0P0X811_ORYSJ Os07g0574100 OSNPB_070574100 ENOG411DRY1 F4K2V2,Q9SQT7,F4JY42,Q3E9D9 F4K2V2_ARATH,Q9SQT7_ARATH,F4JY42_ARATH,Q3E9D9_ARATH DNAJ heat shock N-terminal domain-containing protein,DNAJ heat shock N-terminal domain-containing protein (Putative DnaJ protein),Uncharacterized protein 124443,75920,48279,100407 DNAJ heat shock N-terminal domain-containing protein,DNAJ heat shock N-terminal domain-containing protein (Putative DnaJ protein),Uncharacterized protein locus:2181261;,locus:2081046;,locus:2180014;,locus:2180024; AT5G27240,AT3G06340,AT5G18740,AT5G18750 DNAJ heat shock N-terminal domain-containing protein Os06g0535300 protein (Putative DNAJ heat shock N-terminal domain-containing protein) (cDNA clone:J023071K08, full insert sequence),Os11g0578100 protein,Os11g0574216 protein Q5Z5F4,A0A0P0Y3S7,A0A0P0Y3P4 Q5Z5F4_ORYSJ,A0A0P0Y3S7_ORYSJ,A0A0P0Y3P4_ORYSJ Os06g0535300 OsJ_21576 OSJNBa0001B21.20 OSNPB_060535300,Os11g0578100 OSNPB_110578100,Os11g0574216 OSNPB_110574216 ENOG411DRY0 GLR3.6 Q84W41,A0A1I9LP23,A0A1I9LP22 GLR36_ARATH,A0A1I9LP23_ARATH,A0A1I9LP22_ARATH Glutamate receptor 3.6 (Ligand-gated ion channel 3.6),Glutamate receptor DISRUPTION PHENOTYPE: Reduced wound-activated surface potential changes (WASP) duration in the systemic leaves, resulting in a decreased induction of the regulators of jasmonate-signaling. Glr3.3 and glr3.6 double mutant has no detectable changes in surface potential in systemic leaves and the induction of the regulators of jasmonate-signaling is more strongly decreased. {ECO:0000269|PubMed:23969459}. FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. Mediates leaf-to-leaf wound signaling. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. {ECO:0000269|PubMed:23969459}.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 100530,86382,90577 Glutamate receptor 3.6 (Ligand-gated ion channel 3.6),Glutamate receptor integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267]; cellular response to amino acid stimulus [GO:0071230]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970],integral component of membrane [GO:0016021]; G-protein coupled receptor activity [GO:0004930]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots and siliques. {ECO:0000269|PubMed:12082126}. locus:2081805; AT3G51480 Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411DRY3 RPL3A Q9SKX4 RK3A_ARATH 50S ribosomal protein L3-1, chloroplastic FUNCTION: One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. {ECO:0000250}. 29364 50S ribosomal protein L3-1, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2053713; AT2G43030 50S ribosomal protein Os02g0137200 protein,Os02g0137200 protein (Fragment) A3A2Y2,Q0E446 A3A2Y2_ORYSJ,Q0E446_ORYSJ Os02g0137200 OsJ_05302 OSNPB_020137200,Os02g0137200 Os02g0137200 OSNPB_020137200 ENOG411DRY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein phosphatase 2A regulatory B subunit (B56 family) Serine/threonine protein phosphatase 2A regulatory subunit Q6AT11 Q6AT11_ORYSJ Os05g0178400 Os05g0178400 OSJNBa0029B02.18 OSNPB_050178400 FUNCTION: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000256|PIRNR:PIRNR028043}. ENOG411DRY5 ABCB27 Q0WML0,A0A1P8BFP2 AB27B_ARATH,A0A1P8BFP2_ARATH ABC transporter B family member 27 (ABC transporter ABCB.27) (AtABCB27) (Aluminum tolerance-related ATP-binding cassette transporter) (Antigen peptide transporter-like 2) (Transporter associated with antigen processing-like protein 2) (AtTAP2),Transporter associated with antigen processing protein 2 FUNCTION: Probably involved in redistribution of internalized aluminum. May mediate vacuolar sequestration of a metal complex. {ECO:0000269|PubMed:17171374}. 69104,57190 ABC transporter B family member 27 (ABC transporter ABCB.27) (AtABCB27) (Aluminum tolerance-related ATP-binding cassette transporter) (Antigen peptide transporter-like 2) (Transporter associated with antigen processing-like protein 2) (AtTAP2),Transporter associated with antigen processing protein 2 integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; response to aluminum ion [GO:0010044],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Expressed in the vascular tissue of roots, leaves, stems and flowers, in the distal portion of the root tip, in leaf hyathodes and in anther filaments, pistils and flower receptacles. {ECO:0000269|PubMed:17171374}. locus:2177162; AT5G39040 ABC transporter B family member ABC transporter B family member 25 (ABC transporter ABCB.25) (OsABCB25) (Protein ALS1 homolog),Os03g0755900 protein Q9FNU2,B9FBW3 AB25B_ORYSJ,B9FBW3_ORYSJ OsABCB25 Os03g0755100 LOC_Os03g54790 OSJNBb0081K01.19,Os03g0755900 OsJ_12635 OSNPB_030755900 FUNCTION: May be involved in redistribution of internalized aluminum. May mediate vacuolar sequestration of a metal complex (By similarity). {ECO:0000250}. ENOG411DRY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol 3- and 4-kinase Os08g0489800 protein (Phosphatidylinositol 3-and 4-kinase family-like) Q6ZBQ6 Q6ZBQ6_ORYSJ Os08g0489800 OsJ_27749 OSNPB_080489800 P0605H02.22 ENOG411DRY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: leucine rich repeat containing NA NA NA NA NA NA NA ENOG411DRY6 PCMP-E42 Q9SX45 PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 67396 Pentatricopeptide repeat-containing protein At1g50270 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2011892; AT1G50270 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DRY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os11g0256100 protein (Pentatricopeptide, putative) (Similar to selenium-binding protein) Q53L25 Q53L25_ORYSJ LOC_Os11g14980 Os11g0256100 OsJ_21321 OSNPB_110256100 ENOG411DRY8 PCFS4 Q0WPF2 PCFS4_ARATH Polyadenylation and cleavage factor homolog 4 DISRUPTION PHENOTYPE: Delayed flowering mediated by FLC under both long-day and short-day conditions, but normal response to vernalization treatment. Abnormal alternative polyadenylation-dependent FCA expression profile of the known transcripts (PubMed:18298670). Global differentially processed (DPG) and differentially expressed (DEG) stress-associated genes due to alternative polyadenylation, splicing or transcription initiation (PubMed:21364912). {ECO:0000269|PubMed:18298670, ECO:0000269|PubMed:21364912}. Delayed flowering. Late flowering independent of photoperiod-Q. Li-2008 FUNCTION: Promotes flowering by suppressing FLC-mediated inhibition of flowering through the regulation of FCA pre-mRNA alternative processing (PubMed:18298670). Regulates mRNA maturation including alternative polyadenylation, splicing or transcription initiation of stress-associated genes (PubMed:21364912). {ECO:0000269|PubMed:18298670, ECO:0000269|PubMed:21364912}. R-ATH-72163; 89228 Polyadenylation and cleavage factor homolog 4 cytoplasm [GO:0005737]; mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA polymerase II core binding [GO:0000993]; flower development [GO:0009908]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; mRNA processing [GO:0006397]; positive regulation of flower development [GO:0009911]; termination of RNA polymerase II transcription [GO:0006369] DEVELOPMENTAL STAGE: During embryogenesis, first observed at the heart stage. Expressed through the whole developing embryo from the torpedo stage. Disappears in the root tip of the mature embryo and in adult plants. In seedlings, mostly present in the shoot apical meristem and young leaves. In flowers, detected in sepals, stamens and pistils, but not in petals. {ECO:0000269|PubMed:18298670}. TISSUE SPECIFICITY: Expressed in embryos, seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18298670}. locus:504955249; AT4G04885 RPR NA NA NA NA NA NA NA ENOG411EAYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyt-b5 NA NA NA NA NA NA NA ENOG411E6T1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411E6T0 A0A1P8BDN2,F4K313 A0A1P8BDN2_ARATH,F4K313_ARATH Dirigent protein FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. 21145,14374 Dirigent protein apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:504954921; AT5G42655 NA Expressed protein (Os03g0740100 protein) Q7Y1F3 Q7Y1F3_ORYSJ OSJNBa0057G07.9 OJ1365_D05.28 Os03g0740100 LOC_Os03g52920 OSNPB_030740100 ENOG411E6TZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0171700 protein Q0IPR7 Q0IPR7_ORYSJ Os12g0171700 Os12g0171700 OSNPB_120171700 ENOG411E6TS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0457100 protein,Os08g0457300 protein,Os08g0457200 protein Q6Z0Q1,Q6Z0P9,Q6Z0Q0 Q6Z0Q1_ORYSJ,Q6Z0P9_ORYSJ,Q6Z0Q0_ORYSJ Os08g0457100 Os08g0457100 B1144B06.35 OsJ_27560 OSNPB_080457100,Os08g0457300 B1144B06.38 OsJ_27562 OSNPB_080457300 P0493A04.2,Os08g0457200 B1144B06.37 OsJ_27561 OSNPB_080457200 P0493A04.1 ENOG411E6TN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain NA NA NA NA NA NA NA ENOG411E6TI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E6TH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family NA NA NA NA NA NA NA ENOG411E6TJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein NA NA NA NA NA NA NA ENOG411EAHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0341600 protein,Os09g0344400 protein (Fragment),Os09g0324100 protein Q6EQB2,A0A0P0XM17,A0A0P0XL76 Q6EQB2_ORYSJ,A0A0P0XM17_ORYSJ,A0A0P0XL76_ORYSJ Os09g0341600 Os09g0341600 OJ1116_F08.11 OSNPB_090341600 P0448B03.22,Os09g0344400 OSNPB_090344400,Os09g0324100 OSNPB_090324100 ENOG411EAHG PUB58,PUB57 Q9SGT2,Q9SGT1 PUB58_ARATH,PUB57_ARATH Putative U-box domain-containing protein 58 (EC 2.3.2.27) (Plant U-box protein 58) (RING-type E3 ubiquitin transferase PUB58),U-box domain-containing protein 57 (EC 2.3.2.27) (Plant U-box protein 57) (RING-type E3 ubiquitin transferase PUB57) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 49531,45583 Putative U-box domain-containing protein 58 (EC 2.3.2.27) (Plant U-box protein 58) (RING-type E3 ubiquitin transferase PUB58),U-box domain-containing protein 57 (EC 2.3.2.27) (Plant U-box protein 57) (RING-type E3 ubiquitin transferase PUB57) ubiquitin-protein transferase activity [GO:0004842] AT1G56040,AT1G56030 Ubox NA NA NA NA NA NA NA ENOG411EAHD MYB41 Q9M0J5,A0A1P8B402 MYB41_ARATH,A0A1P8B402_ARATH Transcription factor MYB41 (Myb-related protein 41) (AtMYB41),Myb domain protein 41 FUNCTION: Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. 31652,21923 Transcription factor MYB41 (Myb-related protein 41) (AtMYB41),Myb domain protein 41 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cell growth [GO:0016049]; cuticle development [GO:0042335]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of primary metabolic process [GO:0080090]; regulation of raffinose metabolic process [GO:0080091]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2132957; AT4G28110 myb domain protein 41 NA NA NA NA NA NA NA ENOG411EAHE P0C2G4,Q8GXF6 FBK84_ARATH,FBK85_ARATH F-box/kelch-repeat protein At4g19865,F-box/kelch-repeat protein At4g19870 44241,45081 F-box/kelch-repeat protein At4g19865,F-box/kelch-repeat protein At4g19870 locus:1005716274;,locus:2133985; AT4G19865,AT4G19870 kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EAHB DTX7,DTX8 Q1PFG9,F4HQ05 DTX7_ARATH,DTX8_ARATH Protein DETOXIFICATION 7 (AtDTX7) (Multidrug and toxic compound extrusion protein 7) (MATE protein 7),Protein DETOXIFICATION 8 (AtDTX8) (Multidrug and toxic compound extrusion protein 8) (MATE protein 8) R-ATH-425366; 55708,53577 Protein DETOXIFICATION 7 (AtDTX7) (Multidrug and toxic compound extrusion protein 7) (MATE protein 7),Protein DETOXIFICATION 8 (AtDTX8) (Multidrug and toxic compound extrusion protein 8) (MATE protein 8) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:2010926;,locus:2033309; AT1G64820,AT1G66780 Mate efflux family protein NA NA NA NA NA NA NA ENOG411EAHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0116600 protein (Unknow protein) (cDNA clone:002-148-B10, full insert sequence),Os05g0116200 protein,Os09g0563500 protein,Os01g0904900 protein,Os05g0116300 protein Q65X98,B9FM62,Q650Z1,A3A0N9,A0A0P0WH67 Q65X98_ORYSJ,B9FM62_ORYSJ,Q650Z1_ORYSJ,A3A0N9_ORYSJ,A0A0P0WH67_ORYSJ Os05g0116600 OJ1654_B10.20 OSNPB_050116600 P0496H07.11,Os05g0116200 OsJ_16901 OSNPB_050116200,Os09g0563500 OSJNBa0042B15.3 OSNPB_090563500 P0635G10.38,Os01g0904900 OsJ_04458 OSNPB_010904900,Os05g0116300 OSNPB_050116300 ENOG411EAHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EAHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411EAHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENTH NA NA NA NA NA NA NA ENOG411EAHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EAHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os05g0563550 protein Q6AUG4 Q6AUG4_ORYSJ Os05g0563550 OSJNBb0053D02.7 OSNPB_050563550 ENOG411EAHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EAHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NifU-like domain NA NA NA NA NA NA NA ENOG411EAHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAHX Q9LMW0 Q9LMW0_ARATH F5M15.15 (Girdin (DUF630 and DUF632)) 70898 F5M15.15 (Girdin (DUF630 and DUF632)) locus:2030382; AT1G20530 Protein of unknown function (DUF630) NA NA NA NA NA NA NA ENOG411EAHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EAH5 A8MQR2,B9DHF0,A0A1I9LLN8,F4JCJ2,A0A1I9LLN7 A8MQR2_ARATH,B9DHF0_ARATH,A0A1I9LLN8_ARATH,F4JCJ2_ARATH,A0A1I9LLN7_ARATH AT3G26440 protein (Transmembrane protein, putative (DUF707)),Transmembrane protein, putative (DUF707) 42602,45456,48158,43144,48218 AT3G26440 protein (Transmembrane protein, putative (DUF707)),Transmembrane protein, putative (DUF707) integral component of membrane [GO:0016021],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2079291; AT3G26440 Protein of unknown function (DUF707) NA NA NA NA NA NA NA ENOG411EAH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain OSJNBb0026E15.9 protein (Os04g0196200 protein) Q7XPB2 Q7XPB2_ORYSJ Os04g0196200 Os04g0196200 OsJ_13908 OSJNBb0026E15.9 OSNPB_040196200 ENOG411EAH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp -Asn -His and -Tyr). After this exchange a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine resulting in the hypermodified nucleoside queuosine (Q) (7-(((45-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (By similarity) NA NA NA NA NA NA NA ENOG411E1SZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat stress transcription factor Putative heat stress transcription factor A-6a (Heat stress transcription factor 17) (OsHsf-17) Q5Z6A4 HFA6A_ORYSJ HSFA6A HSF17 Os06g0565200 LOC_Os06g36930 OsJ_020873 P0513E02.12 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DQY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA APO protein 3 NA NA NA NA NA NA NA ENOG411DQY9 O82219,Q9M0B3,A0A1P8B2J9,A0A1P8B2J5,A0A1P8B2M1 O82219_ARATH,Q9M0B3_ARATH,A0A1P8B2J9_ARATH,A0A1P8B2J5_ARATH,A0A1P8B2M1_ARATH At2g23910 (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamoyl CoA reductase),Cinnamoyl-CoA reductase-like protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT2G23910-MONOMER;,ARA:AT4G30470-MONOMER; 34382,34196,30863,30404,31185 At2g23910 (NAD(P)-binding Rossmann-fold superfamily protein) (Putative cinnamoyl CoA reductase),Cinnamoyl-CoA reductase-like protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein response to karrikin [GO:0080167] locus:2061411;,locus:2118766; AT2G23910,AT4G30470 bifunctional dihydroflavonol 4-reductase flavanone NAD dependent epimerase/dehydratase family protein, expressed (Os10g0576900 protein) (cDNA clone:001-125-C10, full insert sequence) (cDNA clone:J033068A22, full insert sequence) Q336P0 Q336P0_ORYSJ LOC_Os10g42620 Os10g0576900 OSNPB_100576900 ENOG411DQY2 CABIN1 A0A1P8B5K4,F4JV60,F4JV59 A0A1P8B5K4_ARATH,F4JV60_ARATH,F4JV59_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein FUNCTION: May be required for replication-independent chromatin assembly. {ECO:0000250|UniProtKB:Q9Y6J0}. 207568,211815,210741 Tetratricopeptide repeat (TPR)-like superfamily protein DNA replication-independent nucleosome assembly [GO:0006336],nucleus [GO:0005634]; DNA replication-independent nucleosome assembly [GO:0006336] locus:2134098; AT4G32820 Inherit from euNOG: Calcineurin binding protein 1 NA NA NA NA NA NA NA ENOG411DQY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fibronectin type III domain Os05g0145400 protein (Unknow protein) (cDNA clone:002-118-C02, full insert sequence) Q6AUH8 Q6AUH8_ORYSJ Os05g0145400 OsJ_17097 OSJNBb0015A05.6 OSNPB_050145400 ENOG411DQY0 MOL1 Q9FGN6 Q9FGN6_ARATH Leucine-rich repeat receptor-like protein kinase (Leucine-rich repeat transmembrane protein kinase family protein) (Receptor protein kinase-like) Enhanced formation of secondary vascular tissue in fascicular and interfascicular regions that exceeded the wild-type by 30%. 98907 Leucine-rich repeat receptor-like protein kinase (Leucine-rich repeat transmembrane protein kinase family protein) (Receptor protein kinase-like) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; negative regulation of secondary growth [GO:2000604] locus:2163665; AT5G51350 Leucine-rich repeat receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DQY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Harpin-induced protein-like (Os02g0538700 protein) (cDNA clone:006-301-D03, full insert sequence) (cDNA clone:006-301-G02, full insert sequence) (cDNA clone:006-301-G10, full insert sequence) (cDNA clone:006-306-D10, full insert sequence) (cDNA clone:J013049G21, full insert sequence) Q6ER87 Q6ER87_ORYSJ Os02g0538700 Os02g0538700 OSJNBa0014M17.19 OSNPB_020538700 P0508B05.40 ENOG411DQY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: MON2 homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411DQY4 Q9LP50,F4HZY1 Q9LP50_ARATH,F4HZY1_ARATH At1g29220 (F28N24.10 protein) (Transcriptional regulator family protein) (Uncharacterized protein At1g29220),Transcriptional regulator family protein 39005,40427 At1g29220 (F28N24.10 protein) (Transcriptional regulator family protein) (Uncharacterized protein At1g29220),Transcriptional regulator family protein regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355] locus:2029979; AT1G29220 transcriptional regulator family protein Os01g0759700 protein (Transcriptional regulator family protein-like) (cDNA clone:J013102B21, full insert sequence),Os01g0759700 protein Q5JLQ6,A0A0P0V8F6 Q5JLQ6_ORYSJ,A0A0P0V8F6_ORYSJ B1131G08.43-1 Os01g0759700 P0512C01.1-1 OSNPB_010759700,Os01g0759700 OSNPB_010759700 ENOG411DQYJ ACA11,ACA4,ACA1 Q9M2L4,O22218,A0A1P8AXT8,A0A1P8AR51,A0A1I9LPN7 ACA11_ARATH,ACA4_ARATH,A0A1P8AXT8_ARATH,A0A1P8AR51_ARATH,A0A1I9LPN7_ARATH Putative calcium-transporting ATPase 11, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11),Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4),Calcium-transporting ATPase (EC 3.6.3.8) Low penetrance of faint chlorotic spots-J. Harper-2010 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles. {ECO:0000250}.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into small vacuoles.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. {ECO:0000256|RuleBase:RU361146}. ARA:AT3G57330-MONOMER;,ARA:AT2G41560-MONOMER; R-ATH-418359;R-ATH-5578775;R-ATH-936837; 3.6.3.8 111945,112749,100803,103847,105461 Putative calcium-transporting ATPase 11, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11),Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4),Calcium-transporting ATPase (EC 3.6.3.8) chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872]; anion homeostasis [GO:0055081]; defense response to bacterium [GO:0042742]; negative regulation of programmed cell death [GO:0043069],chloroplast [GO:0009507]; integral component of plasma membrane [GO:0005887]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872]; anion homeostasis [GO:0055081]; defense response to bacterium [GO:0042742]; negative regulation of programmed cell death [GO:0043069]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388] locus:2082528;,locus:2062673; AT3G57330,AT2G41560 Calcium-transporting ATPase Calcium-transporting ATPase 1, plasma membrane-type (OsACA1) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1),Calcium-transporting ATPase (EC 3.6.3.8) Q8RUN1,A0A0P0XYM8 ACA1_ORYSJ,A0A0P0XYM8_ORYSJ ACA1 Os01g0939100 LOC_Os01g71240 B1150F11.11 P0504E02.35,Os11g0140400 OSNPB_110140400 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles. {ECO:0000250}.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. {ECO:0000256|RuleBase:RU361146}. ENOG411DQYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0686800 protein Q0D3H2 Q0D3H2_ORYSJ Os07g0686800 Os07g0686800 OSNPB_070686800 ENOG411DQYH OXP1 Q9FIZ7 OPLA_ARATH 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase) (5-OPase) (Protein OXOPROLINASE 1) (Pyroglutamase) DISRUPTION PHENOTYPE: No morphological phenotype, but high accumulation of 5-oxoproline and decreased concentration of glutamate. {ECO:0000269|PubMed:18768907}. oxp1-1 cannot convert 5-oxoproline (5OP) into glutamine. Elevated levels of 5OP accumulate in the the leaves stems roots flowers and siliques of this mutant while the level of glutamate is reduced. oxp1-1 mutants have normal seedling root growth and do not display any other morphological defects. They appear to have normal levels of Asp Ser Gln Gly Thr Arg and Ala and have a wild-type sensitivity to nitrogen deficiency.,The 5-oxoproline (5OP) level in this mutant is not significantly different from the level in the oxp1-1 mutant suggesting that neither GGT1 nor GGT4 are important upstream enzymes for generating the 5OP used by OXP1.,The 5-oxoproline (5OP) level in this mutant is not significantly different from the level in the oxp1-1 mutant suggesting that GGT1 is not an important upstream enzyme for generating the 5OP used by OXP1.,The 5-oxoproline (5OP) level in this mutant is not significantly different from the level in the oxp1-1 mutant suggesting that GGT4 is not an important upstream enzyme for generating the 5OP used by OXP1. FUNCTION: Catalyzes the cleavage of 5-oxo-L-proline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Acts in the glutathione degradation pathway. {ECO:0000269|PubMed:18768907}. ARA:AT5G37830-MONOMER; R-ATH-174403; 3.5.2.9; 3.5.2.9 137531 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase) (5-OPase) (Protein OXOPROLINASE 1) (Pyroglutamase) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasmodesma [GO:0009506]; 5-oxoprolinase (ATP-hydrolyzing) activity [GO:0017168]; ATP binding [GO:0005524]; glutathione catabolic process [GO:0006751] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. locus:2156030; AT5G37830 5-oxoprolinase Os01g0966000 protein (Putative 5-oxoprolinase) (cDNA clone:J013023K07, full insert sequence),Os01g0966000 protein (Fragment),Os01g0966000 protein Q8LHD1,A0A0P0VD85,A0A0N7KEG8 Q8LHD1_ORYSJ,A0A0P0VD85_ORYSJ,A0A0N7KEG8_ORYSJ P0458E05.23-1 Os01g0966000 OSNPB_010966000,Os01g0966000 OSNPB_010966000 ENOG411DQYI Q9M8X6 GL16_ARATH Germin-like protein subfamily 1 member 6 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 24921 Germin-like protein subfamily 1 member 6 apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2102955; AT3G04200 germin-like protein NA NA NA NA NA NA NA ENOG411DQYN F4KB73 F4KB73_ARATH ARM repeat superfamily protein 242498 ARM repeat superfamily protein cell cortex [GO:0005938]; membrane [GO:0016020]; plasma membrane [GO:0005886]; site of polarized growth [GO:0030427]; actin filament reorganization [GO:0090527]; cell morphogenesis [GO:0000902] locus:2143216; AT5G15680 protein furry homolog-like Os02g0830801 protein,Os02g0830900 protein (Fragment) A0A0P0VRL9,A0A0P0VRU9 A0A0P0VRL9_ORYSJ,A0A0P0VRU9_ORYSJ Os02g0830801 OSNPB_020830801,Os02g0830900 OSNPB_020830900 ENOG411DQYM MWD22.17 Q500Z1,A0A1P8BG53,A0A1P8BG65 Q500Z1_ARATH,A0A1P8BG53_ARATH,A0A1P8BG65_ARATH At5g51220 (Ubiquinol-cytochrome C chaperone family protein),Ubiquinol-cytochrome C chaperone family protein 32114,25934,25460 At5g51220 (Ubiquinol-cytochrome C chaperone family protein),Ubiquinol-cytochrome C chaperone family protein mitochondrion [GO:0005739]; mitochondrial respiratory chain complex III assembly [GO:0034551]; positive regulation of mitochondrial translation [GO:0070131] locus:2176227; AT5G51220 Ubiquinol-cytochrome c Os07g0490300 protein (cDNA clone:J013149P03, full insert sequence) Q7XHR1 Q7XHR1_ORYSJ Os07g0490300 OSNPB_070490300 P0477A12.34 ENOG411DQYB Q9SV01,F4J5P7 FBW4_ARATH,F4J5P7_ARATH F-box/WD-40 repeat-containing protein At3g52030,F-box family protein with WD40/YVTN repeat doamin 50966,48574 F-box/WD-40 repeat-containing protein At3g52030,F-box family protein with WD40/YVTN repeat doamin locus:2083735; AT3G52030 F-box WD-40 repeat-containing protein F-box domain containing protein, expressed (F-box domain, putative) (Os11g0182400 protein) (cDNA clone:002-105-F05, full insert sequence) Q53MM4 Q53MM4_ORYSJ Os11g0182400 LOC_Os11g07970 Os11g0182400 OsJ_33199 OSNPB_110182400 ENOG411DQYC PEX5 Q9FMA3 PEX5_ARATH Peroxisome biogenesis protein 5 (Peroxin-5) (AtPEX5) (Peroxisomal targeting signal type 1 receptor) (Pex5p) DISRUPTION PHENOTYPE: Peroxisome-defective phenotype including an absolute requirement for sucrose during early development, high seedling lethality, and delayed development. {ECO:0000269|PubMed:16272432}. resistant to the inhibition of root elongation caused by 5 microM indole-3-butyric acid (IBA); fails to induce normal number of lateral roots when treated with 5 microM IBA; exhibits shorter hypocotyl than wt when grown in the dark without sucrose but has a normal hypocotyl when grown in the dark with 0.5% sucrose; no visible phenotype in aerial morphology; defective in seed storage lipid utilization. Embryo defective; Globular-D. Meinke-2008 FUNCTION: Import receptor for peroxisomal-targeting signal one (PTS1). A receptor-cargo complex composed of PEX5, PEX7, a PTS1-containing protein and a PTS2-containing protein is targeted to peroxisomes during import. Necessary for the developmental elimination of obsolete peroxisome matrix proteins. {ECO:0000269|PubMed:11978862, ECO:0000269|PubMed:15548601, ECO:0000269|PubMed:15637057, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:19246395, ECO:0000269|PubMed:20130089, ECO:0000269|PubMed:20974890}. MISCELLANEOUS: PEX5 stability in light-grown seedlings depends on PEX7. R-ATH-8866654; 80912 Peroxisome biogenesis protein 5 (Peroxin-5) (AtPEX5) (Peroxisomal targeting signal type 1 receptor) (Pex5p) cytosol [GO:0005829]; peroxisomal membrane [GO:0005778]; peroxisome matrix targeting signal-1 binding [GO:0005052]; protein import into peroxisome matrix, docking [GO:0016560]; protein targeting to peroxisome [GO:0006625]; response to auxin [GO:0009733] DEVELOPMENTAL STAGE: Expressed at the early stage of germination and during the conversion of glyoxysomes to peroxisomes. Accumulates at high levels in seedlings and at lower levels as plants mature. {ECO:0000269|PubMed:11118212, ECO:0000269|PubMed:11978862, ECO:0000269|PubMed:20974890}. TISSUE SPECIFICITY: Expressed in flowers, siliques, leaves and roots. {ECO:0000269|PubMed:11978862}. locus:2177606; AT5G56290 peroxisomal targeting signal 1 Os08g0500100 protein (Putative peroxisomal targeting signal 1 receptor),Os08g0500100 protein (Putative peroxisomal targeting signal 1 receptor) (cDNA clone:J013001O15, full insert sequence) Q6ZKM1,Q6ZKM0 Q6ZKM1_ORYSJ,Q6ZKM0_ORYSJ OJ1118_A06.13-1 Os08g0500100 OSNPB_080500100,OJ1118_A06.13-2 Os08g0500100 OSNPB_080500100 ENOG411DQYA AAA1 Q9SEX2 KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1) (EC 3.6.4.3) (CAD ATPase) (Katanin-1) (Atp60) (Protein BOTERO 1) (Protein ECTOPIC ROOT HAIR 3) (Protein FAT ROOT) (Protein FRAGILE FIBER 2) (AtAAA1) (p60 katanin) Although more than 60% of the double mutant have two trichome branches at least 30% are unbranched.,About 60% of the trichomes are two-branched.,Decreased fertility compared to wild type.,Reduced trichome branching,Predominantly produces unbranched trichomes.,Grows more slowly than wild type; produces abnormally short and bushy bolts at the time of flowering.,Double mutant has approximately the same proportion of two-branched and unbranched trichomes as the gl-3 single mutant.,Double mutants have more trichome branches than frc single mutant but fewer than nok single mutant.,Produces mostly two-branched trichomes.,Exclusively produces unbranched trichomes.,Produces less two-branched trichomes (~40%) than the frc single mutant. Dwarf; Short hypocotyl; Small rosette; Short roots; Small flowers; Reduced fertility; Fragile inflorescence stems-Z. Ye-2001 FUNCTION: Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. May be required for reorientation of cortical microtubule arrays during cellular elongation. Failure to correctly orient these arrays drastically compromises fiber length, cell wall thickness and mechanical strength. May also be required for the spatial organization of developmental cues within the root. {ECO:0000269|PubMed:11169190, ECO:0000269|PubMed:11283338, ECO:0000269|PubMed:11782406, ECO:0000269|PubMed:12020351, ECO:0000269|PubMed:12571277}. 3.6.4.3; 3.6.4.3 57236 Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1) (EC 3.6.4.3) (CAD ATPase) (Katanin-1) (Atp60) (Protein BOTERO 1) (Protein ECTOPIC ROOT HAIR 3) (Protein FAT ROOT) (Protein FRAGILE FIBER 2) (AtAAA1) (p60 katanin) cytoplasm [GO:0005737]; microtubule [GO:0005874]; nucleus [GO:0005634]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule-severing ATPase activity [GO:0008568]; cortical microtubule organization [GO:0043622]; microtubule cytoskeleton organization [GO:0000226]; microtubule severing [GO:0051013]; multidimensional cell growth [GO:0009825]; plant-type cell wall biogenesis [GO:0009832]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:11283338}. locus:2034230; AT1G80350 Katanin p60 ATPase-containing Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1) (EC 3.6.4.3) (p60 katanin),Os01g0683100 protein (Fragment) Q8S118,A0A0P0V6N8 Q8S118_ORYSJ,A0A0P0V6N8_ORYSJ P0445E10.4-1 KATNA1 P0019E03.39-1 Os01g0683100 OsJ_03030 OSNPB_010683100,Os01g0683100 OSNPB_010683100 FUNCTION: Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. {ECO:0000256|HAMAP-Rule:MF_03023}. ENOG411DQYF MLE2.18 Q9FFQ8,Q84JB7 Q9FFQ8_ARATH,Q84JB7_ARATH DEK domain-containing chromatin associated protein (Emb|CAB62360.1),DEK domain-containing chromatin associated protein (Uncharacterized protein At5g63550) 59556,59428 DEK domain-containing chromatin associated protein (Emb|CAB62360.1),DEK domain-containing chromatin associated protein (Uncharacterized protein At5g63550) nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; chromatin remodeling [GO:0006338]; regulation of double-strand break repair [GO:2000779] locus:2167301; AT5G63550 DEK C terminal domain Os01g0924900 protein (Putative BRI1-KD interacting protein 112) (cDNA clone:J013128L13, full insert sequence),Os01g0924900 protein (Fragment) Q5JKH1,A0A0P0VC90 Q5JKH1_ORYSJ,A0A0P0VC90_ORYSJ Os01g0924900 Os01g0924900 B1033B05.16 OSNPB_010924900,Os01g0924900 OSNPB_010924900 ENOG411DQYG CRK43 Q9M0G5 CRK43_ARATH Putative cysteine-rich receptor-like protein kinase 43 (Cysteine-rich RLK43) (EC 2.7.11.-) 2.7.11.- 70182 Putative cysteine-rich receptor-like protein kinase 43 (Cysteine-rich RLK43) (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468] locus:2139845; AT4G28670 Cysteine-rich receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DQYD PTD F4IDW9 PTD_ARATH Protein PARTING DANCERS (AtPTD) (EC 3.1.-.-) DISRUPTION PHENOTYPE: Reduction in the number of class I crossovers (COs) during meiosis (PubMed:21771883, PubMed:16394097, PubMed:24656236). Delay in the formation of synaptonemal complexes (SC) as well as a few unsynapsed axial elements in early pachytene nuclei in some meiocytes. Early nodules (ENs) are observed on the central element of SC. Reduced fertility due to altered male and female meiosis (PubMed:16394097). {ECO:0000269|PubMed:16394097, ECO:0000269|PubMed:21771883, ECO:0000269|PubMed:24656236}. FUNCTION: Required for chromosome segregation during meiosis (PubMed:16394097). During diakinesis and prometaphase I, essential for the formation of class I meiotic crossovers and homologous recombination (PubMed:16394097, PubMed:21771883, PubMed:24656236). {ECO:0000269|PubMed:16394097, ECO:0000269|PubMed:21771883, ECO:0000269|PubMed:24656236}. 3.1.-.- 27894 Protein PARTING DANCERS (AtPTD) (EC 3.1.-.-) nucleus [GO:0005634]; endonuclease activity [GO:0004519]; chromosome segregation [GO:0007059]; male meiotic nuclear division [GO:0007140]; plant-type sporogenesis [GO:0048236]; pollen development [GO:0009555]; positive regulation of reciprocal meiotic recombination [GO:0010845]; reciprocal meiotic recombination [GO:0007131]; resolution of meiotic recombination intermediates [GO:0000712] DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) and young flower buds. In mature flowers, restricted to the reproductive organs stamens and carpels. In the stamen, accumulates in male meiocytes and in tapetal cells, as well as in mature pollen grains. In the carpel, present in developing ovules and in developing embryos. {ECO:0000269|PubMed:16394097}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, siliques, flowers, inflorescence and anthers. Strongly expressed in meiocytes. {ECO:0000269|PubMed:16394097}. locus:2010321; AT1G12790 NA Os05g0588200 protein (cDNA clone:002-188-H05, full insert sequence) Q6L5B5 Q6L5B5_ORYSJ Os05g0588200 OJ1007_H05.15 OsJ_19727 OSNPB_050588200 ENOG411DQYE A8MQF3,Q94AU3,F4IGM4 A8MQF3_ARATH,Q94AU3_ARATH,F4IGM4_ARATH Uncharacterized protein,Expressed protein (Uncharacterized protein At2g21385) (Uncharacterized protein At2g21385/F3K23.12) 28701,37554,32754 Uncharacterized protein,Expressed protein (Uncharacterized protein At2g21385) (Uncharacterized protein At2g21385/F3K23.12) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; proton-transporting ATP synthase complex biogenesis [GO:0070272] locus:505006264; AT2G21385 NA Os09g0531100 protein Q652K7 Q652K7_ORYSJ Os09g0531100 OJ1254_E07.7 OSNPB_090531100 ENOG411DQYR CAD7,CAD8 Q02971,Q02972 CADH7_ARATH,CADH8_ARATH Cinnamyl alcohol dehydrogenase 7 (AtCAD7) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase-like protein B),Cinnamyl alcohol dehydrogenase 8 (AtCAD8) (EC 1.1.1.195) (NAD-dependent mannitol dehydrogenase 2) FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000269|PubMed:14745009}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. ARA:AT4G37980-MONOMER;MetaCyc:MONOMER-17195;,ARA:AT4G37990-MONOMER; 1.1.1.195; 1.1.1.195 38246,38942 Cinnamyl alcohol dehydrogenase 7 (AtCAD7) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase-like protein B),Cinnamyl alcohol dehydrogenase 8 (AtCAD8) (EC 1.1.1.195) (NAD-dependent mannitol dehydrogenase 2) cinnamyl-alcohol dehydrogenase activity [GO:0045551]; sinapyl alcohol dehydrogenase activity [GO:0052747]; zinc ion binding [GO:0008270]; lignin biosynthetic process [GO:0009809]; response to bacterium [GO:0009617],aryl-alcohol dehydrogenase (NADP+) activity [GO:0047681]; cinnamyl-alcohol dehydrogenase activity [GO:0045551]; sinapyl alcohol dehydrogenase activity [GO:0052747]; zinc ion binding [GO:0008270]; lignin biosynthetic process [GO:0009809]; response to bacterium [GO:0009617] TISSUE SPECIFICITY: Expressed in the differentiation and elongation zones of primary and lateral roots. Expressed in the hypocotyl, cotyledon and leaf veins, hydathodes and trichomes. In stems, expressed in the vascular cambium region. Expressed in the style, anthers, stamen filaments, vascular tissues of sepals and stigmatic regions in flowers, and abscission, style and stigmatic regions of siliques and seed testa. {ECO:0000269|PubMed:16832689, ECO:0000269|PubMed:17467016}.,TISSUE SPECIFICITY: Expressed in the differentiation and elongation zones of primary and lateral roots. Expressed in the hypocotyl, cotyledon veins, vasculature of the first rosette leaves, hydathodes and trichomes. In stems, expressed in the vascular cambium and developing xylem tissues. Expressed in the style, anthers, stamen filaments, stigmatic regions in flowers, and abscission and style regions of siliques. {ECO:0000269|PubMed:16832689, ECO:0000269|PubMed:17467016}. locus:2005527;,locus:2005528; AT4G37980,AT4G37990 Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers Probable cinnamyl alcohol dehydrogenase 8A (OsCAD8A) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 8D (OsCAD8D) (EC 1.1.1.195) Q6ERX1,Q6ERW5 CAD8A_ORYSJ,CAD8D_ORYSJ CAD8A Os09g0399800 LOC_Os09g23530 P0435D08.27 P0650H04.9,CAD8D Os09g0400400 LOC_Os09g23560 OsJ_29284 P0435D08.35 P0650H04.17 FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000250|UniProtKB:O49482}. ENOG411DQYS ATHB-4,HAT3,HAT4 P92953,P46602,Q05466 ATHB4_ARATH,HAT3_ARATH,HAT4_ARATH Homeobox-leucine zipper protein ATHB-4 (HD-ZIP protein ATHB-4) (Homeodomain transcription factor ATHB-4),Homeobox-leucine zipper protein HAT3 (Homeodomain-leucine zipper protein HAT3) (HD-ZIP protein 3),Homeobox-leucine zipper protein HAT4 (HD-ZIP protein ATHB-2) (Homeodomain transcription factor ATHB-2) (Homeodomain-leucine zipper protein HAT4) (HD-ZIP protein 4) Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. 34816,34747,31853 Homeobox-leucine zipper protein ATHB-4 (HD-ZIP protein ATHB-4) (Homeodomain transcription factor ATHB-4),Homeobox-leucine zipper protein HAT3 (Homeodomain-leucine zipper protein HAT3) (HD-ZIP protein 3),Homeobox-leucine zipper protein HAT4 (HD-ZIP protein ATHB-2) (Homeodomain transcription factor ATHB-2) (Homeodomain-leucine zipper protein HAT4) (HD-ZIP protein 4) nucleus [GO:0005634]; plasmodesma [GO:0009506]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to far red light [GO:0010218]; response to hormone [GO:0009725]; shade avoidance [GO:0009641]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell proliferation [GO:0008283]; negative regulation of transcription, DNA-templated [GO:0045892]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; response to far red light [GO:0010218]; root development [GO:0048364]; shade avoidance [GO:0009641]; shoot system morphogenesis [GO:0010016]; transcription, DNA-templated [GO:0006351]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Predominantly expressed in leaves and stems. {ECO:0000269|PubMed:8106086}. locus:2055028;,locus:2103396;,locus:2129136; AT2G44910,AT3G60390,AT4G16780 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX1 (HD-ZIP protein HOX1) (Homeodomain transcription factor HOX1) (OsHox1) Q7XC54 HOX1_ORYSJ HOX1 Os10g0561800 LOC_Os10g41230 OsJ_031189 OSJNBb0089A17.12 FUNCTION: Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. ENOG411DQYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein NA NA NA NA NA NA NA ENOG411DQYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease family protein OTU-like cysteine protease-like (Os06g0669800 protein) (cDNA clone:J033044I12, full insert sequence),Os02g0168600 protein Q655R7,Q6H6D4 Q655R7_ORYSJ,Q6H6D4_ORYSJ Os06g0669800 Os06g0669800 OsJ_22312 OSNPB_060669800 P0686E06.34,Os02g0168600 OsJ_05537 OSNPB_020168600 P0669G09.12 ENOG411DQYV EIF2B Q41969,Q9LZV2,A0A1P8BFE1,F4JFQ0,A0A1P8BFD8 IF2B_ARATH,Q9LZV2_ARATH,A0A1P8BFE1_ARATH,F4JFQ0_ARATH,A0A1P8BFD8_ARATH Eukaryotic translation initiation factor 2 subunit beta (eIF2-beta) (Protein EMBRYO DEFECTIVE 1401),Eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (Translation initiation factor eIF-2 beta chain-like protein),Eukaryotic translation initiation factor 2B family protein / eIF-2B family protein,Translation initiation factor IF2/IF5 Embryo defective; Cotyledon-D. Meinke-2003 FUNCTION: eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S pre-initiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B (By similarity). {ECO:0000250}. R-ATH-156827;R-ATH-382556;R-ATH-72695;R-ATH-72702;R-ATH-72731; 30663,26548,24773,19109,28230 Eukaryotic translation initiation factor 2 subunit beta (eIF2-beta) (Protein EMBRYO DEFECTIVE 1401),Eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (Translation initiation factor eIF-2 beta chain-like protein),Eukaryotic translation initiation factor 2B family protein / eIF-2B family protein,Translation initiation factor IF2/IF5 plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; translation initiation factor activity [GO:0003743],translation initiation factor activity [GO:0003743] locus:2147162;,locus:2181002;,locus:2077507; AT5G20920,AT5G01940,AT3G07920 eukaryotic translation initiation factor 2 Eukaryotic translation initiation factor 2 beta subunit, putative, expressed (Os03g0333300 protein) (cDNA clone:J033023N08, full insert sequence),Os07g0681000 protein (Putative translation initiation factor eIF-2 beta chain),Os03g0333300 protein (Fragment) Q10LV9,Q7XHW8,A0A0P0VX12,A0A0P0VX34 Q10LV9_ORYSJ,Q7XHW8_ORYSJ,A0A0P0VX12_ORYSJ,A0A0P0VX34_ORYSJ Os03g0333300 LOC_Os03g21550 Os03g0333300 OsJ_10726 OSNPB_030333300,Os07g0681000 OSJNBa0008J01.17 OSNPB_070681000,Os03g0333300 OSNPB_030333300 ENOG411DQYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) OSJNBa0064G10.22 protein (Os04g0678200 protein) (cDNA clone:001-208-E04, full insert sequence) Q7XKA9 Q7XKA9_ORYSJ Os04g0678200 Os04g0678200 OsJ_16632 OSJNBa0064G10.22 OSNPB_040678200 ENOG411DQYU F4JB46 F4JB46_ARATH Leucine-rich repeat (LRR) family protein 57261 Leucine-rich repeat (LRR) family protein locus:2094103; AT3G19230 LRR receptor-like serine threonine-protein kinase Leucine-rich repeat family protein, putative, expressed (Os03g0184400 protein),Os09g0458300 protein (Putative serine/threonine-specific receptor protein kinase) (cDNA clone:002-145-H08, full insert sequence) Q10QT0,Q67TZ6 Q10QT0_ORYSJ,Q67TZ6_ORYSJ Os03g0184400 LOC_Os03g08610 Os03g0184400 OsJ_09686 OSNPB_030184400,Os09g0458300 Os09g0458300 B1045B05.18 OsJ_29635 OSNPB_090458300 ENOG411ECR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF642) NA NA NA NA NA NA NA ENOG411ED4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411DXJ2 Q9FN36,Q8VY99 Q9FN36_ARATH,Q8VY99_ARATH Gb|AAF34833.1 (Serine/threonine-protein kinase WNK (With No Lysine)-like protein),Serine/threonine-protein kinase WNK (With No Lysine)-like protein (Uncharacterized protein At5g53900) 42210,29927 Gb|AAF34833.1 (Serine/threonine-protein kinase WNK (With No Lysine)-like protein),Serine/threonine-protein kinase WNK (With No Lysine)-like protein (Uncharacterized protein At5g53900) cytosol [GO:0005829]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],kinase activity [GO:0016301] locus:2154719; AT5G53900 NA Protein RICE SALT SENSITIVE 3,Os11g0446000 protein K4PW38,A0A0P0Y247 RSS3_ORYSJ,A0A0P0Y247_ORYSJ RSS3 Os11g0446000 LOC_Os11g25920,Os11g0446000 OSNPB_110446000 DISRUPTION PHENOTYPE: Defects in root growth. {ECO:0000269|PubMed:23715469}. FUNCTION: Involved in the repression of jasmonate (JA)-induced genes. Forms a ternary complex with TIFY11A/JAZ9 and BHLH094 to negatively regulate JA-responsive genes. Involved in transcriptional regulation in the root tip. Plays a regulatory role in root cell elongation. Regulates root cell elongation during salt stress. {ECO:0000269|PubMed:23715469}. ENOG411DXJ3 CLH1 O22527 CLH1_ARATH Chlorophyllase-1 (AtCLH1) (EC 3.1.1.14) (Chlorophyll-chlorophyllido hydrolase 1) (Chlase 1) (Coronatine-induced protein 1) (CORI1) FUNCTION: Catalyzes the hydrolysis of ester bond in chlorophyll to yield chlorophyllide and phytol. Shows a preferential activity toward chlorophyll a. {ECO:0000269|PubMed:10611389, ECO:0000269|PubMed:11950974}. MISCELLANEOUS: Unlike CLH2, the expression of this protein is dependent on the presence of a functional COI1 protein.; MISCELLANEOUS: It has been proposed that some chlorophyllase might be transported to vacuole via the endoplasmic reticulum where they might be glycosylated. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll degradation. MetaCyc:AT1G19670-MONOMER; 3.1.1.14; 3.1.1.14 34855 Chlorophyllase-1 (AtCLH1) (EC 3.1.1.14) (Chlorophyll-chlorophyllido hydrolase 1) (Chlase 1) (Coronatine-induced protein 1) (CORI1) vacuole [GO:0005773]; chlorophyllase activity [GO:0047746]; pheophytinase b activity [GO:0102293]; chlorophyll catabolic process [GO:0015996]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832] DEVELOPMENTAL STAGE: Constitutively expressed in flowers with a higher level at the stage of buds. TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers and siliques, but not in roots. {ECO:0000269|PubMed:9501136}. locus:2013129; AT1G19670 chlorophyllase (EC 3.1.1.14) NA NA NA NA NA NA NA ENOG411DXJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os04g0543700 protein (Fragment) Q0JBB7 Q0JBB7_ORYSJ Os04g0543700 Os04g0543700 OSNPB_040543700 ENOG411DXJ1 TRP2,TRFL1 Q9SNB9,A0A1I9LN25,A0A1I9LN24 TRP2_ARATH,A0A1I9LN25_ARATH,A0A1I9LN24_ARATH Telomere repeat-binding protein 2 (Protein TRF-LIKE 1),TRF-like 1 DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy. {ECO:0000269|PubMed:15364931}. FUNCTION: Binds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}. 61775,57050,44089 Telomere repeat-binding protein 2 (Protein TRF-LIKE 1),TRF-like 1 nuclear telomere cap complex [GO:0000783]; DNA binding, bending [GO:0008301]; double-stranded telomeric DNA binding [GO:0003691]; telomeric DNA binding [GO:0042162]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and leaves. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}. locus:2075145; AT3G46590 telomeric DNA binding Telomere-binding protein 1 (Protein RTBP1),Os02g0817800 protein Q9LL45,A0A0P0VR85,A0A0P0VRH0 TBP1_ORYSJ,A0A0P0VR85_ORYSJ,A0A0P0VRH0_ORYSJ TBP1 Os02g0817800 LOC_Os02g57270 OJ1136_C12.18-1 OJ1136_C12.18-2 OJ1202_E07.1-1 OJ1202_E07.1-2,Os02g0817800 OSNPB_020817800 DISRUPTION PHENOTYPE: Severe developmental abnormalities of vegetative organs and impaired reproductive organ formation. Chromosomal fusion in mother pollen cells. Increased telomere length and frequency of anaphase bridges containing telomeric repeat DNA. {ECO:0000269|PubMed:17586654}. FUNCTION: Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}. ENOG411DXJ6 Q9LDE3 FBK9_ARATH F-box/kelch-repeat protein At1g23390 43879 F-box/kelch-repeat protein At1g23390 locus:2028090; AT1G23390 F-box Kelch-repeat protein Kelch repeat-containing F-box-like protein (Os02g0465600 protein) (cDNA, clone: J100086M08, full insert sequence),Kelch repeat-containing F-box-like protein (Os09g0292900 protein),Os01g0704300 protein (Fragment) Q6K4V7,Q69J07,A0A0P0V732 Q6K4V7_ORYSJ,Q69J07_ORYSJ,A0A0P0V732_ORYSJ Os02g0465600 Os02g0465600 OJ1342_D02.3 OSJNBa0035A24.53 OSNPB_020465600,Os09g0292900 Os09g0292900 B1043F11.15 B1054C11.35 OSNPB_090292900,Os01g0704300 OSNPB_010704300 ENOG411DXJ7 CLASP Q8RWY6 CLASP_ARATH CLIP-associated protein (AtCLASP) DISRUPTION PHENOTYPE: Various plant growth reductions (e.g. dwarf), cell form defects (e.g. reduced trichome branches number) and reduced mitotic activity. Less root cortical microtubule arrays hypersensitive to microtubule-destabilizing drugs. Aberrant microtubule preprophase bands, mitotic spindles, and phragmoplasts. {ECO:0000269|PubMed:17873093, ECO:0000269|PubMed:18042620, ECO:0000269|PubMed:18716054}. Microtubules in interphase and mitotic microtubule arrays appear less stable and are more sensitive to the microtubule destabilizer oryzalin. Buildup of microtubules in the preprophase band and decrease in microtubule lengths in spindles and phragmoplasts are all consistent with the presence of destabilized microtubules.,Significant dwarfing at all stages of development compared with wild type. Cell expansion in leaves roots and hypocotyls is affected. Dwarf; Short roots; Reduced fertility-G. Wasteneys-2007 FUNCTION: Cortical microtubule plus-end tracking protein required for cell morphogenesis and cell division. Promotes the stabilization of dynamic microtubules during mitosis. Regulates microtubule-cortex attachment, thereby contributing to self-organization of cortical microtubules and subsequent cell shape. {ECO:0000269|PubMed:17873093, ECO:0000269|PubMed:18042620, ECO:0000269|PubMed:18716054, ECO:0000269|PubMed:21847104, ECO:0000269|PubMed:22500804}. 158951 CLIP-associated protein (AtCLASP) cell cortex [GO:0005938]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; spindle microtubule [GO:0005876]; microtubule plus-end binding [GO:0051010]; cell cycle [GO:0007049]; cell division [GO:0051301]; cell growth [GO:0016049]; cortical microtubule organization [GO:0043622]; negative regulation of microtubule depolymerization [GO:0007026]; protein stabilization [GO:0050821] TISSUE SPECIFICITY: Expressed at a low level in all tissues, mostly in young developing tissues. {ECO:0000269|PubMed:18042620}. locus:2061599; AT2G20190 CLASP N terminal NA NA NA NA NA NA NA ENOG411DXJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DXJ5 ACO1,ACO3 Q42560,Q9SIB9,B3H5Y0 ACO1_ARATH,ACO3M_ARATH,B3H5Y0_ARATH Aconitate hydratase 1 (Aconitase 1) (EC 4.2.1.3) (Citrate hydro-lyase 1),Aconitate hydratase 3, mitochondrial (Aconitase 3) (mACO1) (EC 4.2.1.3) (Citrate hydro-lyase 3),Aconitate hydratase (Aconitase) (EC 4.2.1.3) DISRUPTION PHENOTYPE: Reduced cytosolic and mitochondrial aconitase (ACO) activities by 70 and 20 precent, respectively (PubMed:17013749, PubMed:17437406). Increased tolerance to oxidative stress mediated by paraquat, a superoxide-generating agent (PubMed:17013749). Slightly higher production of CO(2) (PubMed:25061985). {ECO:0000269|PubMed:17013749, ECO:0000269|PubMed:17437406, ECO:0000269|PubMed:25061985}.,DISRUPTION PHENOTYPE: Reduced cytosolic and mitochondrial aconitase (ACO) activities by 25 and 55 precent, respectively (PubMed:17013749, PubMed:17437406). Increased tolerance to oxidative stress mediated by paraquat, a superoxide-generating agent (PubMed:17013749). Delayed early seedling growth, altered assimilation of acetate feeding and elevated citrate and malate levels (PubMed:25061985). {ECO:0000269|PubMed:17013749, ECO:0000269|PubMed:17437406, ECO:0000269|PubMed:25061985}. FUNCTION: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. Contributes to oxidative stress tolerance (PubMed:17013749). May have a role in respiration (PubMed:25061985). {ECO:0000269|PubMed:17013749, ECO:0000269|PubMed:25061985}.,FUNCTION: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. Contributes to oxidative stress tolerance (PubMed:17013749). Modulates cytosolic citrate metabolism during lipid mobilization. Required during seedling growth (PubMed:25061985). {ECO:0000269|PubMed:17013749, ECO:0000269|PubMed:25061985}.,FUNCTION: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. {ECO:0000256|RuleBase:RU361275}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 2/2. {ECO:0000250|UniProtKB:P19414}. MetaCyc:AT4G35830-MONOMER; R-ATH-917937; 4.2.1.3 98152,108201,86546 Aconitate hydratase 1 (Aconitase 1) (EC 4.2.1.3) (Citrate hydro-lyase 1),Aconitate hydratase 3, mitochondrial (Aconitase 3) (mACO1) (EC 4.2.1.3) (Citrate hydro-lyase 3),Aconitate hydratase (Aconitase) (EC 4.2.1.3) apoplast [GO:0048046]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; 4 iron, 4 sulfur cluster binding [GO:0051539]; aconitate hydratase activity [GO:0003994]; copper ion binding [GO:0005507]; mRNA 5'-UTR binding [GO:0048027]; citrate metabolic process [GO:0006101]; isocitrate metabolic process [GO:0006102]; response to iron ion starvation [GO:1990641]; response to salt stress [GO:0009651]; tricarboxylic acid cycle [GO:0006099],cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; 4 iron, 4 sulfur cluster binding [GO:0051539]; aconitate hydratase activity [GO:0003994]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; citrate metabolic process [GO:0006101]; glyoxylate cycle [GO:0006097]; isocitrate metabolic process [GO:0006102]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; seedling development [GO:0090351]; tricarboxylic acid cycle [GO:0006099],4 iron, 4 sulfur cluster binding [GO:0051539]; aconitate hydratase activity [GO:0003994]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Mostly expressed in roots, stems and leaves, also present in stems and flowers. {ECO:0000269|PubMed:17437406}.,TISSUE SPECIFICITY: Major aconitase isoenzyme in young seedlings (PubMed:25061985). Expressed in roots, leaves, stems and flowers, and, at low levels, in seeds (PubMed:17437406). {ECO:0000269|PubMed:17437406, ECO:0000269|PubMed:25061985}. locus:2125354;,locus:2063354; AT4G35830,AT2G05710 Aconitate hydratase Putative aconitate hydratase, cytoplasmic (Aconitase) (EC 4.2.1.3) (Citrate hydro-lyase),Aconitate hydratase (Aconitase) (EC 4.2.1.3) (Fragment) Q6YZX6,A0A0N7KLZ5 ACOC_ORYSJ,A0A0N7KLZ5_ORYSJ Os08g0191100 LOC_Os08g09200 P0610E02.32,Os06g0303400 OSNPB_060303400 FUNCTION: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. {ECO:0000250}.,FUNCTION: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. {ECO:0000256|RuleBase:RU361275}. ENOG411DXJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger Dof domain, zinc finger family protein, expressed (Os03g0764900 protein) (cDNA clone:001-114-F11, full insert sequence) Q10EQ1 Q10EQ1_ORYSJ LOC_Os03g55610 Os03g0764900 OSNPB_030764900 ENOG411DXJ9 PCMP-H26 Q8LK93 PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 85) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19934379}. FUNCTION: Involved in RNA editing event in chloroplasts. Required for the editing of a single site in ndhD transcript, which is a plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Not essential for the activity of the NDH complex of the photosynthetic electron transport chain. {ECO:0000269|PubMed:19934379}. 68170 Pentatricopeptide repeat-containing protein At2g02980, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 85) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA processing [GO:0031425]; mRNA processing [GO:0006397]; RNA modification [GO:0009451] locus:2056740; AT2G02980 Pentatricopeptide repeat-containing protein Os03g0795200 protein (Pentatricopeptide, putative, expressed) (Putative PPR repeat containing protein) Q6F382 Q6F382_ORYSJ OSJNBb0021G19.15 LOC_Os03g58100 Os03g0795200 OSNPB_030795200 ENOG411DXJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0119100 protein (cDNA clone:J033114H01, full insert sequence),Os08g0313600 protein Q0J3G0,A0A0P0XE80 Q0J3G0_ORYSJ,A0A0P0XE80_ORYSJ Os09g0119100 Os09g0119100 OSNPB_090119100,Os08g0313600 OSNPB_080313600 ENOG411DXJS PCMP-E45 Q9SZK1 PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010 62434 Pentatricopeptide repeat-containing protein At4g38010 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2121055; AT4G38010 Pentatricopeptide repeat-containing protein Os04g0488200 protein A0A0P0WC23 A0A0P0WC23_ORYSJ Os04g0488200 OSNPB_040488200 ENOG411DXJP PHR1 Q94CL7 PHR1_ARATH Protein PHOSPHATE STARVATION RESPONSE 1 (AtPHR1) DISRUPTION PHENOTYPE: Strongly reduced shoot growth, and slightly increased root growth. Reduced expression of phosphate starvation-induced (PSI) genes, decreased cellular inorganic phosphate (Pi) content and shoot-to-root ratio, and impaired anthocyanin accumulation (PubMed:17927693). {ECO:0000269|PubMed:17927693}. FUNCTION: Transcription factor involved in phosphate starvation signaling (PubMed:11511543, PubMed:17927693, PubMed:26586833). Binds as a dimer to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:11511543, PubMed:20838596, PubMed:26586833). SPX1 is a competitive inhibitor of this DNA-binding (PubMed:25271326). PHR1 binding to its targets is low Pi-dependent (PubMed:25271326). Regulates the expression of miR399 (PubMed:20838596). Regulates the expression of IPS1 (At3g09922), a non-coding RNA that mimics the target of miR399 to block the cleavage of PHO2 under Pi-deficient conditions (PubMed:17643101). Regulates lipid remodeling and triacylglycerol accumulation during phosphorus starvation (PubMed:25680792). Required for the shoot-specific hypoxic response (PubMed:24753539). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). Contributes to the homeostasis of both sulfate and phosphate in plants under phosphate deficiency (PubMed:21261953). Required for adaptation to high light and retaining functional photosynthesis during phosphate starvation (PubMed:21910737). Involved in the coregulation of Zn and Pi homeostasis (PubMed:24420568). {ECO:0000269|PubMed:11511543, ECO:0000269|PubMed:17643101, ECO:0000269|PubMed:17927693, ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:21261953, ECO:0000269|PubMed:21910737, ECO:0000269|PubMed:23788639, ECO:0000269|PubMed:24420568, ECO:0000269|PubMed:24753539, ECO:0000269|PubMed:25271326, ECO:0000269|PubMed:25680792, ECO:0000269|PubMed:26586833}. 45546 Protein PHOSPHATE STARVATION RESPONSE 1 (AtPHR1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to high light intensity [GO:0071486]; cellular response to phosphate starvation [GO:0016036]; circadian rhythm [GO:0007623]; regulation of transcription, DNA-templated [GO:0006355]; sulfate ion homeostasis [GO:0055063]; transcription, DNA-templated [GO:0006351] locus:2139865; AT4G28610 Myb-like DNA-binding domain containing protein expressed Protein PHOSPHATE STARVATION RESPONSE 1 (OsPHR1),Protein PHOSPHATE STARVATION RESPONSE 2 (OsPHR2),Os07g0438800 protein (Fragment) Q10LZ1,Q6Z156,A0A0N7KNC8 PHR1_ORYSJ,PHR2_ORYSJ,A0A0N7KNC8_ORYSJ PHR1 Os03g0329900 LOC_Os03g21240 OsJ_10705,PHR2 Os07g0438800 LOC_Os07g25710 OSJNBa0026I22.19 P0443H10.4,Os07g0438800 OSNPB_070438800 FUNCTION: Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}.,FUNCTION: Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:25657119, PubMed:26082401). Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). Involved in both systematic and local Pi-signaling pathways (PubMed:19704822). Regulates several Pi transporters (PubMed:18263782). Regulates the expression of PT2 (PubMed:20149131). Directly up-regulates SPX1 and SPX2 expression, but PHR2 binding to DNA is repressed redundantly by SPX1 and SPX2 in a PI-dependent manner (PubMed:25271318). The DNA-binding activity is also repressed by SPX4 (PubMed:24692424). Involved in root growth under Pi deprivation (PubMed:18263782). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:19704822, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:24692424, ECO:0000269|PubMed:25271318, ECO:0000269|PubMed:25657119, ECO:0000269|PubMed:26082401}. ENOG411DXJQ F4IFA9,A0A1P8AZ71,Q8RY62,A0A1P8AZ49 F4IFA9_ARATH,A0A1P8AZ71_ARATH,Q8RY62_ARATH,A0A1P8AZ49_ARATH Pyridoxamine 5'-phosphate oxidase family protein,At2g04690/F28I8.27 (Pyridoxamine 5'-phosphate oxidase family protein) R-ATH-6798695; 22821,12646,23594,26043 Pyridoxamine 5'-phosphate oxidase family protein,At2g04690/F28I8.27 (Pyridoxamine 5'-phosphate oxidase family protein) cofactor binding [GO:0048037],integral component of membrane [GO:0016021]; cofactor binding [GO:0048037],vacuole [GO:0005773]; cofactor binding [GO:0048037] locus:2049234; AT2G04690 Inherit from KOG: Cellular Repressor of E1A-stimulated Genes CREG2-protein-like (Os06g0238300 protein) Q67VB8 Q67VB8_ORYSJ Os06g0238300 Os06g0238300 OsJ_20751 OSJNBa0052G07.8 OSJNBa0068B06.17 OSNPB_060238300 ENOG411DXJV TFCE Q8GRL7 TBCE_ARATH Tubulin-folding cofactor E (AtTFCE) (Protein PFIFFERLING) DISRUPTION PHENOTYPE: Embryo lethality. Embryo development limited to the formation of a few giant cells lacking microtubules but not actin filaments. Failure to localize KNOLLE in mitotic cells. {ECO:0000269|PubMed:11959844}. Embryo defective; Preglobular; Enlarged embryo cells and endosperm nuclei-U. Mayer-2002 FUNCTION: Essential tubulin-folding protein involved in the tubulin folding pathway. Not essential for cell viability. Probably involved in the binding of alpha-tubulin in the multimeric supercomplex. {ECO:0000269|PubMed:10099932, ECO:0000269|PubMed:11959844}. MISCELLANEOUS: Belongs to the PILZ group of genes that disrupt, when mutated, the microtubule cytoskeleton and produce mushroom-shaped ('pilz' in German) embryos. 58242 Tubulin-folding cofactor E (AtTFCE) (Protein PFIFFERLING) chloroplast [GO:0009507]; embryo development ending in seed dormancy [GO:0009793] locus:2825339; AT1G71440 Tubulin-specific chaperone Os05g0105300 protein Q75M15 Q75M15_ORYSJ Os05g0105300 Os05g0105300 OSJNBb0035J08.7 OSNPB_050105300 P0668H12.22 ENOG411DXJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (Os11g0222900 protein) Q53NZ3 Q53NZ3_ORYSJ Os11g0222900 LOC_Os11g11550 Os11g0222900 OSNPB_110222900 ENOG411DXJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os03g0591600 protein A0A0P0W0I2 A0A0P0W0I2_ORYSJ Os03g0591600 OSNPB_030591600 ENOG411DXJU Q9LIG0 Y3136_ARATH Clavaminate synthase-like protein At3g21360 (EC 1.-.-.-) MISCELLANEOUS: May use 2-oxoglutarate as a cosubstrate. {ECO:0000250}. 1.-.-.- 37212 Clavaminate synthase-like protein At3g21360 (EC 1.-.-.-) nucleus [GO:0005634]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2089423; AT3G21360 clavaminate synthase-like protein Os01g0190000 protein A0A0P0UZ39 A0A0P0UZ39_ORYSJ Os01g0190000 OSNPB_010190000 ENOG411DXJZ CYP714A2,CYP714A1 Q6NKZ8,Q93Z79,A0A1P8BDE2,A0A1R7T3K0 C14A2_ARATH,C14A1_ARATH,A0A1P8BDE2_ARATH,A0A1R7T3K0_ARATH Cytochrome P450 714A2 (EC 1.14.-.-) (EUI-like P450 A2),Cytochrome P450 714A1 (EC 1.14.-.-) (EUI-like P450 A1),Cytochrome P450, family 714, subfamily A, polypeptide 2,Cytochrome P450, family 714, subfamily A, polypeptide 1 DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with CYP714A1. Cyp714a1 and cyp714a2 double mutants flower earlier and have an increased plant size and biomass. {ECO:0000269|PubMed:21457373}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with CYP714A2. Cyp714a1 and cyp714a2 double mutants flower earlier and have an increased plant size and biomass. {ECO:0000269|PubMed:21457373}. FUNCTION: Involved in the inactivation of early gibberellin (GA) intermediates. {ECO:0000269|PubMed:21457373}. MISCELLANEOUS: Overexpression of CYP714A2 causes severe dwarfism with defective leaf development. {ECO:0000305|PubMed:21457373}.,MISCELLANEOUS: Overexpression of CYP714A1 causes severe dwarfism with defective leaf development. {ECO:0000305|PubMed:21457373}. ARA:AT5G24900-MONOMER; 1.14.-.- 59334,60335,45821,46046 Cytochrome P450 714A2 (EC 1.14.-.-) (EUI-like P450 A2),Cytochrome P450 714A1 (EC 1.14.-.-) (EUI-like P450 A1),Cytochrome P450, family 714, subfamily A, polypeptide 2,Cytochrome P450, family 714, subfamily A, polypeptide 1 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and petioles of young leaves, in the leaf margin and petiole vein of cotyledons, and at low levels in the filaments of developing flowers. Not detected in siliques. {ECO:0000269|PubMed:21457373}.,TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), petioles of young leaves and emerging leaves, in sepals, stigma, anther and filaments of the developing flowers, and in the receptacle and stigma of the developing siliques. {ECO:0000269|PubMed:21457373}. locus:2149423;,locus:2149438; AT5G24900,AT5G24910 cytochrome P450 Cytochrome P450 714C2 (EC 1.14.-.-),Os11g0119700 protein Q2QYH7,A0A0P0XYR6 C14C2_ORYSJ,A0A0P0XYR6_ORYSJ CYP714C2 Os12g0119000 LOC_Os12g02640 OsJ_35025,Os11g0119700 OSNPB_110119700 FUNCTION: Probably not involved in gibberellin metabolism since over-expression of CYP714C2 in a heterologous system does not induce semi-dwarfism. {ECO:0000269|PubMed:23319637}. ENOG411DXJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein Os01g0234100-like NA NA NA NA NA NA NA ENOG411DXJY Q8VZR3,A0A1P8AWN5,Q6IDJ6,Q9C6E7,A0A1P8AVT2,F4HWQ7,A0A1P8AVQ9,A0A1P8AVP4 Q8VZR3_ARATH,A0A1P8AWN5_ARATH,Q6IDJ6_ARATH,Q9C6E7_ARATH,A0A1P8AVT2_ARATH,F4HWQ7_ARATH,A0A1P8AVQ9_ARATH,A0A1P8AVP4_ARATH TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (Uncharacterized protein At1g45010) (Uncharacterized protein At1g45010/F27F5_9),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein,At1g35180 (At3g16870) (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (Uncharacterized protein T32G9.29) 25918,20275,26022,25009,25127,25841,19359,17566 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (Uncharacterized protein At1g45010) (Uncharacterized protein At1g45010/F27F5_9),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein,At1g35180 (At3g16870) (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (Uncharacterized protein T32G9.29) integral component of membrane [GO:0016021] locus:2028220;,locus:2203256;,locus:2203272; AT1G45010,AT1G35180,AT1G35170 TRAM LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Os01g0262500 protein (Fragment) A0A0P0V1A2 A0A0P0V1A2_ORYSJ Os01g0262500 OSNPB_010262500 ENOG411DXJB PSD1 Q84V22,A0A1P8B7Z0 PSD1_ARATH,A0A1P8B7Z0_ARATH Phosphatidylserine decarboxylase proenzyme 1, mitochondrial (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 1 beta chain; Phosphatidylserine decarboxylase 1 alpha chain],Phosphatidylserine decarboxylase 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17449644}. FUNCTION: Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Contributes only to a minor proportion of PtdEtn production. {ECO:0000255|HAMAP-Rule:MF_03208, ECO:0000269|PubMed:12857846, ECO:0000269|PubMed:17449644}. PATHWAY: Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2. {ECO:0000255|HAMAP-Rule:MF_03208, ECO:0000305|PubMed:12857846}. MetaCyc:AT4G16700-MONOMER; 4.1.1.65 50560,42983 Phosphatidylserine decarboxylase proenzyme 1, mitochondrial (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 1 beta chain; Phosphatidylserine decarboxylase 1 alpha chain],Phosphatidylserine decarboxylase 1 integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; phosphatidylserine decarboxylase activity [GO:0004609]; phosphatidylethanolamine biosynthetic process [GO:0006646],phosphatidylserine decarboxylase activity [GO:0004609]; phospholipid biosynthetic process [GO:0008654] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12857846, ECO:0000269|PubMed:17449644}. locus:2129046; AT4G16700 phosphatidylserine decarboxylase Phosphatidylserine decarboxylase proenzyme 1, mitochondrial (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 1 beta chain; Phosphatidylserine decarboxylase 1 alpha chain] Q10T43 PSD1_ORYSJ PSD1 Os03g0101900 LOC_Os03g01216 FUNCTION: Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. {ECO:0000255|HAMAP-Rule:MF_03208}. ENOG411DXJC XRN4 Q9FQ04,A0A1P8AQR8 XRN4_ARATH,A0A1P8AQR8_ARATH 5'-3' exoribonuclease 4 (EC 3.1.13.-) (Protein ACC INSENSITIVE 1) (Protein ETHYLENE INSENSITIVE 5) (Protein EXORIBONUCLEASE 4),Exoribonuclease 4 DISRUPTION PHENOTYPE: Plants are viable with no apparent deleterious phenotype. {ECO:0000269|PubMed:15260969, ECO:0000269|PubMed:15528448, ECO:0000269|PubMed:16920797, ECO:0000269|PubMed:17085683}. Insensitive to ethylene-P. Genschik-2006 FUNCTION: Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades miRNA target cleavage products that lack a 5'-cap structure. Antagonizes the negative feedback regulation on EIN3 by promoting EBF1 and EBF2 mRNA decay, which consequently allows the accumulation of EIN3 protein to trigger the ethylene response. {ECO:0000269|PubMed:15260969, ECO:0000269|PubMed:15528448, ECO:0000269|PubMed:16920797, ECO:0000269|PubMed:17085683}.,FUNCTION: Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. {ECO:0000256|PIRNR:PIRNR037239}. R-ATH-6791226; 3.1.13.- 107778,101177 5'-3' exoribonuclease 4 (EC 3.1.13.-) (Protein ACC INSENSITIVE 1) (Protein ETHYLENE INSENSITIVE 5) (Protein EXORIBONUCLEASE 4),Exoribonuclease 4 cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; P-body [GO:0000932]; polysome [GO:0005844]; 5'-3' exoribonuclease activity [GO:0004534]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; cell division [GO:0051301]; cellular heat acclimation [GO:0070370]; deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; heat acclimation [GO:0010286]; miRNA catabolic process [GO:0010587]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397]; nuclear-transcribed mRNA catabolic process, exonucleolytic [GO:0000291]; regulation of gene expression, epigenetic [GO:0040029]; unidimensional cell growth [GO:0009826]; vasculature development [GO:0001944],nucleus [GO:0005634]; 5'-3' exoribonuclease activity [GO:0004534]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:11106401}. locus:2020073; AT1G54490 5-3 exoribonuclease 5'-3' exoribonuclease (EC 3.1.13.-),Os03g0794800 protein (Fragment) Q6F378,A0A0P0W431 Q6F378_ORYSJ,A0A0P0W431_ORYSJ OSJNBb0021G19.19 LOC_Os03g58060 Os03g0794800 OSNPB_030794800,Os03g0794800 OSNPB_030794800 FUNCTION: Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. {ECO:0000256|PIRNR:PIRNR037239}. ENOG411DXJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-CoA synthase NA NA NA NA NA NA NA ENOG411DXJF NIP4-1,NIP4-2,NIP4:2 Q9FIZ9,Q8W036,A0A1P8BA67 NIP41_ARATH,NIP42_ARATH,A0A1P8BA67_ARATH Putative aquaporin NIP4-1 (NOD26-like intrinsic protein 4-1) (AtNIP4;1),Probable aquaporin NIP4-2 (NOD26-like intrinsic protein 4-2) (AtNIP4;2) (Nodulin-26-like major intrinsic protein 5) (NodLikeMip5) (Protein NLM5),NOD26-like intrinsic protein 42 FUNCTION: Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}.,FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. 30217,30277,34620 Putative aquaporin NIP4-1 (NOD26-like intrinsic protein 4-1) (AtNIP4;1),Probable aquaporin NIP4-2 (NOD26-like intrinsic protein 4-2) (AtNIP4;2) (Nodulin-26-like major intrinsic protein 5) (NodLikeMip5) (Protein NLM5),NOD26-like intrinsic protein 42 integral component of plasma membrane [GO:0005887]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] locus:2156020;,locus:2156025; AT5G37810,AT5G37820 Aquaporin NA NA NA NA NA NA NA ENOG411DXJG RH42,RH45,RH24 Q8H0U8,Q9SF41,O22907,A0A1I9LRR1 RH42_ARATH,RH45_ARATH,RH24_ARATH,A0A1I9LRR1_ARATH DEAD-box ATP-dependent RNA helicase 42 (EC 3.6.4.13) (DEAD-box RNA helicase RCF1) (REGULATOR OF CBF GENE EXPRESSION 1),DEAD-box ATP-dependent RNA helicase 45 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 24 (EC 3.6.4.13),P-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Helicase required for pre-mRNA splicing, cold-responsive gene regulation and cold tolerance. {ECO:0000269|PubMed:23371945}. R-ATH-72163;,R-ATH-72163;R-ATH-72165; 3.6.4.13 133033,111625,83051,111757 DEAD-box ATP-dependent RNA helicase 42 (EC 3.6.4.13) (DEAD-box RNA helicase RCF1) (REGULATOR OF CBF GENE EXPRESSION 1),DEAD-box ATP-dependent RNA helicase 45 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 24 (EC 3.6.4.13),P-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; regulation of gene expression [GO:0010468]; RNA secondary structure unwinding [GO:0010501],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; nucleic acid binding [GO:0003676] locus:2037416;,locus:2074899;,locus:2065215; AT1G20920,AT3G09620,AT2G47330 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 42 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 24 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 45 (EC 3.6.4.13),Os08g0154200 protein (Fragment),Os08g0154225 protein Q84UQ1,Q10MH8,Q0J7Y8,A0A0P0XBX9,A0A0P0XCD9 RH42_ORYSJ,RH24_ORYSJ,RH45_ORYSJ,A0A0P0XBX9_ORYSJ,A0A0P0XCD9_ORYSJ Os08g0159900 LOC_Os08g06344 OsJ_26125 P0498E12.131 P0672D01.114,Os03g0308500 LOC_Os03g19530,Os08g0154200 LOC_Os08g05810,Os08g0154200 OSNPB_080154200,Os08g0154225 OSNPB_080154225 ENOG411DXJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os06g0101800 protein (cDNA clone:002-104-B01, full insert sequence) Q0DFC8 Q0DFC8_ORYSJ Os06g0101800 Os06g0101800 OSNPB_060101800 ENOG411DXJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May be involved in modulation of pathogen defense and leaf cell death (By similarity) NA NA NA NA NA NA NA ENOG411DXJJ MAIL3 Q9LNG5 PPP7L_ARATH Serine/threonine-protein phosphatase 7 long form homolog (EC 3.1.3.16) (Protein MAIN-LIKE 3) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:24635680}. FUNCTION: Maybe required to maintain cell division activity in meristematic cells. {ECO:0000250|UniProtKB:Q9LMT7}. 3.1.3.16 149455 Serine/threonine-protein phosphatase 7 long form homolog (EC 3.1.3.16) (Protein MAIN-LIKE 3) nucleus [GO:0005634]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721] TISSUE SPECIFICITY: Expressed in root tips, the shoot apical meristem (SAM), leaf vasculature, hydathodes and mature flowers. {ECO:0000269|PubMed:24635680}. locus:2023792; AT1G48120 Serine threonine-protein phosphatase 7 long form homolog Calcineurin-like phosphoesterase-like (Os07g0238800 protein) (cDNA clone:002-102-A05, full insert sequence),Os02g0592600 protein (Fragment),Os11g0534500 protein,Os01g0738500 protein (Fragment),Os01g0531200 protein (Fragment) Q7XHQ1,A0A0P0VL38,A0A0P0VL28,A0A0P0Y360,A0A0N7KDQ2,A0A0P0V3V1 Q7XHQ1_ORYSJ,A0A0P0VL38_ORYSJ,A0A0P0VL28_ORYSJ,A0A0P0Y360_ORYSJ,A0A0N7KDQ2_ORYSJ,A0A0P0V3V1_ORYSJ P0565A07.129 P0523A04.101 Os07g0238800 OSNPB_070238800,Os02g0592600 OSNPB_020592600,Os11g0534500 OSNPB_110534500,Os01g0738500 OSNPB_010738500,Os01g0531200 OSNPB_010531200 ENOG411DXJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0227600 protein (cDNA clone:J033148M04, full insert sequence),Os02g0228300 protein (Putative CLAVATA1 receptor kinase),Os02g0228151 protein B7F4D3,Q6H5Y1,A0A0P0VGR0 B7F4D3_ORYSJ,Q6H5Y1_ORYSJ,A0A0P0VGR0_ORYSJ Os02g0227600 OSNPB_020227600,Os02g0228300 OsJ_05965 OSNPB_020228300 P0620H05.25,Os02g0228151 OSNPB_020228151 ENOG411DXJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os06g0639800 protein (Putative cytochrome P450) (cDNA clone:001-013-E10, full insert sequence) (cDNA clone:001-206-H02, full insert sequence),Os06g0641200 protein,Os06g0640800 protein,Os06g0640100 protein,Os06g0641500 protein Q67WH9,Q0DAP2,A0A0P0WZH2,A0A0P0WZ54,A0A0P0WZJ2 Q67WH9_ORYSJ,Q0DAP2_ORYSJ,A0A0P0WZH2_ORYSJ,A0A0P0WZ54_ORYSJ,A0A0P0WZJ2_ORYSJ Os06g0639800 Os06g0639800 OSNPB_060639800 P0458E02.18,Os06g0641200 Os06g0641200 OSNPB_060641200,Os06g0640800 OSNPB_060640800,Os06g0640100 OSNPB_060640100,Os06g0641500 OSNPB_060641500 ENOG411DXJI Q9SKU6 PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial 56827 Pentatricopeptide repeat-containing protein At2g20710, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2051379; AT2G20710 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DXJN PCMP-H76 Q9SN85 PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530 66326 Pentatricopeptide repeat-containing protein At3g47530 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2079187; AT3G47530 Pentatricopeptide repeat-containing protein Os08g0434000 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6YWL6 Q6YWL6_ORYSJ Os08g0434000 OSNPB_080434000 P0413H11.3 P0431A03.25 ENOG411DXJM A4,A2,A1,A3 Q8GTY0,Q8W4H7,P0DH99,Q0WL56,Q6NLF6,F4HUA0 EF1A4_ARATH,EF1A2_ARATH,EF1A1_ARATH,EF1A3_ARATH,Q6NLF6_ARATH,F4HUA0_ARATH Elongation factor 1-alpha 4 (EF-1-alpha 4) (eEF-1A4),Elongation factor 1-alpha 2 (EF-1-alpha 2) (eEF-1A2),Elongation factor 1-alpha 1 (EF-1-alpha 1) (eEF-1A1),Elongation factor 1-alpha 3 (EF-1-alpha 3) (eEF-1A3),At1g35550 (Elongation factor Tu C-terminal domain-containing protein),GTP binding Elongation factor Tu family protein Short roots under vertical growth-W. Ransom-Hodgkins-2009 FUNCTION: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. MISCELLANEOUS: There are four genes for EF-1-alpha in Arabidopsis thaliana. The sequence of genes 1, 2, and 3 are identical. R-ATH-3371511;R-ATH-6798695;R-ATH-8876725; 49502,11578,41374 Elongation factor 1-alpha 4 (EF-1-alpha 4) (eEF-1A4),Elongation factor 1-alpha 2 (EF-1-alpha 2) (eEF-1A2),Elongation factor 1-alpha 1 (EF-1-alpha 1) (eEF-1A1),Elongation factor 1-alpha 3 (EF-1-alpha 3) (eEF-1A3),At1g35550 (Elongation factor Tu C-terminal domain-containing protein),GTP binding Elongation factor Tu family protein cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746],intracellular [GO:0005622]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; mRNA binding [GO:0003729]; translation elongation factor activity [GO:0003746],intracellular [GO:0005622]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746],chloroplast [GO:0009507]; cytosol [GO:0005829]; intracellular [GO:0005622]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; response to cadmium ion [GO:0046686],translation elongation factor activity [GO:0003746],GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746] locus:2175118;,locus:2205105;,locus:2205115;,locus:2205095;,locus:2014741; AT5G60390,AT1G07930,AT1G07940,AT1G07920,AT1G35550 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (By similarity) Elongation factor 1-alpha (EF-1-alpha),Os03g0177900 protein,Os03g0177400 protein (Fragment) O64937,A0A0P0VTT8,A0A0N7KGP4 EF1A_ORYSJ,A0A0P0VTT8_ORYSJ,A0A0N7KGP4_ORYSJ REFA1 Os03g0177400 LOC_Os03g08010; REFA2 Os03g0178000 LOC_Os03g08060; REFA3 Os03g0177900 LOC_Os03g08050; REFA4 Os03g0177500 LOC_Os03g08020,Os03g0177900 OSNPB_030177900,Os03g0177400 OSNPB_030177400 FUNCTION: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. ENOG411EEQ4 T16L24.200 Q9M1A3,F4J9E4 Q9M1A3_ARATH,F4J9E4_ARATH At3g59650 (Mitochondrial ribosomal protein L51/S25/CI-B8 family protein) (Uncharacterized protein At3g59650) (Uncharacterized protein T16L24.200),Mitochondrial ribosomal protein L51/S25/CI-B8 family protein 13701,16643 At3g59650 (Mitochondrial ribosomal protein L51/S25/CI-B8 family protein) (Uncharacterized protein At3g59650) (Uncharacterized protein T16L24.200),Mitochondrial ribosomal protein L51/S25/CI-B8 family protein ribosome [GO:0005840],mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735] locus:2097563; AT3G59650 Mitochondrial ribosomal protein L51 S25 CI-B8 family protein NA NA NA NA NA NA NA ENOG411EEQH Q9M0I9 Q9M0I9_ARATH At4g28180 (Uncharacterized protein AT4g28180) 27609 At4g28180 (Uncharacterized protein AT4g28180) locus:2123658; AT4G28180 NA NA NA NA NA NA NA NA ENOG411EEQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411EEQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EEQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L21e NA NA NA NA NA NA NA ENOG411EEQR Q5S4V8 Q5S4V8_ARATH Uncharacterized protein 30969 Uncharacterized protein locus:504956080; AT2G38823 NA NA NA NA NA NA NA NA ENOG411EEQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase Mutator family NA NA NA NA NA NA NA ENOG411EAI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-box protein Os02g0812700 protein A0A0P0VR42 A0A0P0VR42_ORYSJ Os02g0812700 OSNPB_020812700 ENOG411EFR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox domain NA NA NA NA NA NA NA ENOG411E9S3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2985) NA NA NA NA NA NA NA ENOG411E9S2 F9K21.70,F9K21.50 Q9SJT6,Q9M1F8,Q9M1G0,Q9SKL2,F4IRP1,F4IRP0,F4K784 Q9SJT6_ARATH,Q9M1F8_ARATH,Q9M1G0_ARATH,Q9SKL2_ARATH,F4IRP1_ARATH,F4IRP0_ARATH,F4K784_ARATH IBR domain containing protein (Mutator-like transposase),Reverse transcriptase-like protein (Uncharacterized protein F9K21.70),IBR domain containing protein (Uncharacterized protein F9K21.50),RING/U-box superfamily protein (Uncharacterized protein At2g25360),RING/U-box superfamily protein 52791,23457,25642,43589,62617,69451,51019 IBR domain containing protein (Mutator-like transposase),Reverse transcriptase-like protein (Uncharacterized protein F9K21.70),IBR domain containing protein (Uncharacterized protein F9K21.50),RING/U-box superfamily protein (Uncharacterized protein At2g25360),RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964]; ubiquitin-protein transferase activity [GO:0004842],cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] locus:2050100;,locus:2085652;,locus:2085622;,locus:2040065;,locus:2040025;,locus:2151689; AT2G21420,AT3G45490,AT3G45470,AT2G25360,AT2G25370,AT5G37560 IBR domain NA NA NA NA NA NA NA ENOG411E9S1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin propeller repeat NA NA NA NA NA NA NA ENOG411E9S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase C65 Otubain Os02g0521600 protein (Fragment),Os02g0521500 protein (Fragment) A0A0P0VJU2,A0A0P0VJR1 A0A0P0VJU2_ORYSJ,A0A0P0VJR1_ORYSJ Os02g0521600 OSNPB_020521600,Os02g0521500 OSNPB_020521500 ENOG411E9S7 Q9LYL6 Y3270_ARATH WEB family protein At3g56270 51240 WEB family protein At3g56270 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2078361; AT3G56270 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411E9S5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0576200 protein A0A0P0WYB5 A0A0P0WYB5_ORYSJ Os06g0576200 OSNPB_060576200 ENOG411E9S4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative esterase NA NA NA NA NA NA NA ENOG411E9S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411E9S8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E9SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NBS-LRR-like protein Os01g0582100 protein,Os01g0581800 protein,Os01g0582300 protein A0A0P0V4H4,A0A0P0V4J7,A0A0P0V4J2 A0A0P0V4H4_ORYSJ,A0A0P0V4J7_ORYSJ,A0A0P0V4J2_ORYSJ Os01g0582100 OSNPB_010582100,Os01g0581800 OSNPB_010581800,Os01g0582300 OSNPB_010582300 ENOG411E9SB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0141900 protein (Putative NBS-LRR disease resistance protein homologue),Os04g0626450 protein (Fragment),Os04g0626500 protein (Fragment),Os11g0263000 protein Q8H4K7,C7J1X6,A0A0P0WF22,A0A0P0Y115 Q8H4K7_ORYSJ,C7J1X6_ORYSJ,A0A0P0WF22_ORYSJ,A0A0P0Y115_ORYSJ OJ1351_C05.118 Os07g0141900 OsJ_23053 OSNPB_070141900,Os04g0626450 Os04g0626450 OSNPB_040626450,Os04g0626500 OSNPB_040626500,Os11g0263000 OSNPB_110263000 ENOG411E9SA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411E9SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411E9SF Q9LXC7 Q9LXC7_ARATH At5g09630 (LisH/CRA/RING-U-box domains-containing protein) (Similarity to unknown protein) (Uncharacterized protein F17I14_180) 44427 At5g09630 (LisH/CRA/RING-U-box domains-containing protein) (Similarity to unknown protein) (Uncharacterized protein F17I14_180) cytoplasm [GO:0005737]; GID complex [GO:0034657]; nucleus [GO:0005634]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2144736; AT5G09630 CRA NA NA NA NA NA NA NA ENOG411E9SE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: monooxygenase NA NA NA NA NA NA NA ENOG411E9SD MYB87 F4JSU0 MYB87_ARATH Transcription factor MYB87 (Myb-related protein 87) (AtMYB87) FUNCTION: Transcription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}. 34966 Transcription factor MYB87 (Myb-related protein 87) (AtMYB87) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; plant-type cell wall organization [GO:0009664]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves, internodes, shoot tips and flowers. {ECO:0000269|PubMed:16461581}. locus:2137589; AT4G37780 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E9SK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytidylyltransferase Cytidylyltransferase family protein, expressed (Os12g0121300 protein) (cDNA clone:J013062A17, full insert sequence),Os11g0123400 protein Q2QYF8,A0A0N7KSC9 Q2QYF8_ORYSJ,A0A0N7KSC9_ORYSJ LOC_Os12g02820 Os12g0121300 OsJ_35038 OSNPB_120121300,Os11g0123400 OSNPB_110123400 ENOG411E9SJ MDJ22.2,MDJ22.10,MDJ22.1,MFC16.16,MDJ22.15 Q9C8Y6,Q9C8Y8,Q9C8Y7,Q9LZZ2,Q9FI16,Q9FNI8,Q9C8Y5,Q9FNK0,Q9C6H1,Q0WVH8,Q1PDU4,Q9FNJ3,Q9FNK2,A0A1P8AS92,A0A1P8BCZ8,A0A1P8BCX4 FBD5_ARATH,FDL7_ARATH,FDL8_ARATH,FBD12_ARATH,FBD18_ARATH,FBD32_ARATH,FBD6_ARATH,FDL30_ARATH,Q9C6H1_ARATH,Q0WVH8_ARATH,Q1PDU4_ARATH,Q9FNJ3_ARATH,Q9FNK2_ARATH,A0A1P8AS92_ARATH,A0A1P8BCZ8_ARATH,A0A1P8BCX4_ARATH FBD-associated F-box protein At1g66310,Putative F-box/FBD/LRR-repeat protein At1g66290,Putative F-box/FBD/LRR-repeat protein At1g66300,Putative FBD-associated F-box protein At3g60710,FBD-associated F-box protein At5g44490,FBD-associated F-box protein At5g22730,FBD-associated F-box protein At1g66320,Putative F-box/FBD/LRR-repeat protein At5g22610,RNI-like superfamily protein (Uncharacterized protein T12I7.9),FBD-like domain family protein,FBD / Leucine Rich Repeat domains containing protein,F-box protein,Leucine Rich Repeat protein family,F-box/RNI-like/FBD-like domains-containing protein,FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein 50198,52633,52337,36725,54862,53650,52689,57504,48407,13088,37965,27875,34932,47343,52849,45130 FBD-associated F-box protein At1g66310,Putative F-box/FBD/LRR-repeat protein At1g66290,Putative F-box/FBD/LRR-repeat protein At1g66300,Putative FBD-associated F-box protein At3g60710,FBD-associated F-box protein At5g44490,FBD-associated F-box protein At5g22730,FBD-associated F-box protein At1g66320,Putative F-box/FBD/LRR-repeat protein At5g22610,RNI-like superfamily protein (Uncharacterized protein T12I7.9),FBD-like domain family protein,FBD / Leucine Rich Repeat domains containing protein,F-box protein,Leucine Rich Repeat protein family,F-box/RNI-like/FBD-like domains-containing protein,FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein locus:2201527;,locus:2201512;,locus:2201522;,locus:2101796;,locus:2162484;,locus:2201537;,locus:2195185;,locus:4515103727;,locus:2162429;,locus:2162434;,locus:2162424; AT1G66310,AT1G66290,AT1G66300,AT3G60710,AT5G44490,AT5G22730,AT1G66320,AT5G22610,AT1G66640,AT5G53592,AT5G22600,AT5G22680,AT5G22590 FBD NA NA NA NA NA NA NA ENOG411E9SI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9SN CYP71B3,CYP71B24 O65785,Q9LTL8 C71B3_ARATH,C71BO_ARATH Cytochrome P450 71B3 (EC 1.14.-.-),Cytochrome P450 71B24 (EC 1.14.-.-) ARA:AT3G26220-MONOMER;,ARA:AT3G26230-MONOMER; 1.14.-.- 57663,56809 Cytochrome P450 71B3 (EC 1.14.-.-),Cytochrome P450 71B24 (EC 1.14.-.-) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2093546;,locus:2093556; AT3G26220,AT3G26230 cytochrome P450 family 71 subfamily B polypeptide NA NA NA NA NA NA NA ENOG411E9SM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X-Pro dipeptidyl-peptidase (S15 family) NA NA NA NA NA NA NA ENOG411E9SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Os07g0632000 protein (Putative chitinase) (cDNA clone:J023022A01, full insert sequence) Q8LHN3 Q8LHN3_ORYSJ P0519E12.114 Os07g0632000 OSNPB_070632000 ENOG411E9SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0493100 protein A0A0P0Y2J8 A0A0P0Y2J8_ORYSJ Os11g0493100 OSNPB_110493100 ENOG411E9SQ STP4 Q39228 STP4_ARATH Sugar transport protein 4 (Hexose transporter 4) FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. {ECO:0000269|PubMed:8989877}. 57095 Sugar transport protein 4 (Hexose transporter 4) integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; glucose transmembrane transporter activity [GO:0005355]; monosaccharide transmembrane transporter activity [GO:0015145]; sucrose:proton symporter activity [GO:0008506]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; sucrose transport [GO:0015770] TISSUE SPECIFICITY: Mostly in flowers and roots, especially in anthers, including pollen, and root tips. Also present in some hydathodes. {ECO:0000269|PubMed:12805612, ECO:0000269|PubMed:8989877}. locus:2092286; AT3G19930 carbohydrate transmembrane transporter monosaccharide transmembrane transporter sucrose hydrogen symporter sugar hydrogen symporter NA NA NA NA NA NA NA ENOG411E9SP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9SW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A NA NA NA NA NA NA NA ENOG411E9SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411E9SU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411E9ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins (By similarity) NA NA NA NA NA NA NA ENOG411E9SZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9SY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0545400 protein A0A0P0YB14 A0A0P0YB14_ORYSJ Os12g0545400 OSNPB_120545400 ENOG411E9SX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transporting ATPase C-terminus NA NA NA NA NA NA NA ENOG411DVV9 MQB2.25 Q9FM04,A0A1P8BGM5,A0A1P8BGN5 GDL88_ARATH,A0A1P8BGM5_ARATH,A0A1P8BGN5_ARATH GDSL esterase/lipase At5g62930 (EC 3.1.1.-),SGNH hydrolase-type esterase superfamily protein 3.1.1.- 27157,20733,30174 GDSL esterase/lipase At5g62930 (EC 3.1.1.-),SGNH hydrolase-type esterase superfamily protein cytosol [GO:0005829]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2170738; AT5G62930 GDSL esterase lipase GDSL-like Lipase/Acylhydrolase family protein, expressed (Os10g0476700 protein) (cDNA clone:006-311-B04, full insert sequence) (cDNA clone:J023052C15, full insert sequence) Q337K6 Q337K6_ORYSJ Os10g0476700 LOC_Os10g33690 Os10g0476700 OsJ_31884 OSNPB_100476700 ENOG411DVVX ATPC Q96250 ATPG3_ARATH ATP synthase subunit gamma, mitochondrial (F-ATPase gamma subunit) FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. ARA:AT2G33040-MONOMER; 35448 ATP synthase subunit gamma, mitochondrial (F-ATPase gamma subunit) cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleus [GO:0005634]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; zinc ion binding [GO:0008270]; ATP synthesis coupled proton transport [GO:0015986] locus:2046485; AT2G33040 Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel linked together by a central stalk and a peripheral stalk. During catalysis ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits ATP synthase gamma chain (ATP synthase gamma chain, mitochondrial, putative, expressed) (Os10g0320400 protein) (cDNA clone:J023135E20, full insert sequence) Q7G3Y4 Q7G3Y4_ORYSJ LOC_Os10g17280 Os10g0320400 OSNPB_100320400 ENOG411DRDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os12g0289600 protein (Fragment) A0A0P0Y979 A0A0P0Y979_ORYSJ Os12g0289600 OSNPB_120289600 ENOG411DRDB NHX6,NHX5 Q8RWU6,Q8S396 NHX6_ARATH,NHX5_ARATH Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6),Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5) (NHE-5) DISRUPTION PHENOTYPE: No visible phenotype; due to redundancy with NHX5. Nhx5 and nhx6 double mutant has a slower development, is drastically smaller and is salt sensitive. {ECO:0000269|PubMed:21278129}.,DISRUPTION PHENOTYPE: No visible phenotype; due to redundancy with NHX6. Nhx5 and nhx6 double mutant has a slower development, is drastically smaller and is salt sensitive. {ECO:0000269|PubMed:21278129}. FUNCTION: Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity (By similarity). {ECO:0000250, ECO:0000269|PubMed:21278129}.,FUNCTION: Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. {ECO:0000269|PubMed:12047628, ECO:0000269|PubMed:21278129}. R-ATH-425986; 59314,57335 Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6),Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5) (NHE-5) endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium:proton antiporter activity [GO:0015386]; sodium:proton antiporter activity [GO:0015385]; potassium ion transmembrane transport [GO:0071805]; regulation of intracellular pH [GO:0051453]; sodium ion import across plasma membrane [GO:0098719] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Detected at very low levels in roots and shoots. {ECO:0000269|PubMed:12047628, ECO:0000269|PubMed:21278129}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Detected at low levels in roots and shoots. {ECO:0000269|PubMed:12047628, ECO:0000269|PubMed:21278129}. locus:2019853;,locus:2020068; AT1G79610,AT1G54370 Sodium hydrogen exchanger Sodium/hydrogen exchanger,Os09g0482620 protein Q0J2X1,A0A0P0XNN5 Q0J2X1_ORYSJ,A0A0P0XNN5_ORYSJ OsNHX5 Os09g0286400 OSNPB_090286400,Os09g0482620 OSNPB_090482620 ENOG411DRDM PCMP-E99 Q9XE98 PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370 81212 Pentatricopeptide repeat-containing protein At4g04370 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2134842; AT4G04370 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DRDW Q93W28 Y4554_ARATH Uncharacterized protein At4g15545 37206 Uncharacterized protein At4g15545 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:505006472; AT4G15545 NA Os05g0406000 protein (Fragment) Q0DI98 Q0DI98_ORYSJ Os05g0406000 Os05g0406000 OSNPB_050406000 ENOG411DRDT MJJ3.13 F4KCG5,F4K0T3,F4JT92 F4KCG5_ARATH,F4K0T3_ARATH,F4JT92_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein,Nucleotide/nucleic acid binding protein 78544,50705,91564 RNA-binding (RRM/RBD/RNP motifs) family protein,Nucleotide/nucleic acid binding protein RNA binding [GO:0003723],nucleolus [GO:0005730]; RNA binding [GO:0003723] locus:4515103541;,locus:2166359;,locus:2122990; AT5G08695,AT5G05720,AT4G19610 Multiple RNA-binding domain-containing protein Os04g0611500 protein (Fragment) Q0JA84 Q0JA84_ORYSJ Os04g0611500 Os04g0611500 OSNPB_040611500 ENOG411DRDS CCT6B,CCT6A Q8L7N0,Q9M888 TCPZB_ARATH,TCPZA_ARATH T-complex protein 1 subunit zeta 2 (TCP-1-zeta 2) (CCT-zeta 2) (Chaperonin CCT6B),T-complex protein 1 subunit zeta 1 (TCP-1-zeta 1) (CCT-zeta 1) (Chaperonin CCT6A) FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. {ECO:0000305}. R-ATH-390471;R-ATH-6814122; 58928,58950 T-complex protein 1 subunit zeta 2 (TCP-1-zeta 2) (CCT-zeta 2) (Chaperonin CCT6B),T-complex protein 1 subunit zeta 1 (TCP-1-zeta 1) (CCT-zeta 1) (Chaperonin CCT6A) chaperonin-containing T-complex [GO:0005832]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077],chaperonin-containing T-complex [GO:0005832]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; response to cadmium ion [GO:0046686]; response to zinc ion [GO:0010043] locus:2146082;,locus:2076924; AT5G16070,AT3G02530 T-complex protein 1 subunit Chaperonin protein (Os05g0147400 protein) (Putative chaperonin),Os05g0147400 protein (Fragment) Q6ASR1,A0A0N7KK53 Q6ASR1_ORYSJ,A0A0N7KK53_ORYSJ Os05g0147400 OsJ_17110 OSJNBa0077J22.11 OSNPB_050147400,Os05g0147400 OSNPB_050147400 FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. ENOG411DRDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0710500 protein (Receptor protein kinase-like) (cDNA clone:J033126M21, full insert sequence) Q6ZFY2 Q6ZFY2_ORYSJ Os02g0710500 Os02g0710500 OJ1038_A06.12 OJ1311_H06.22 OsJ_08111 OSNPB_020710500 ENOG411DVUI Q84W43,Q9LXU4 Q84W43_ARATH,Q9LXU4_ARATH Proline-tRNA ligase (DUF1680) (Uncharacterized protein At5g12960),Proline-tRNA ligase (DUF1680) (Uncharacterized protein At5g12950/T24H18_120) (Uncharacterized protein T24H18_120) 96525,96236 Proline-tRNA ligase (DUF1680) (Uncharacterized protein At5g12960),Proline-tRNA ligase (DUF1680) (Uncharacterized protein At5g12950/T24H18_120) (Uncharacterized protein T24H18_120) alpha-L-arabinofuranosidase activity [GO:0046556]; ligase activity [GO:0016874]; L-arabinose metabolic process [GO:0046373],plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; ligase activity [GO:0016874] locus:2182295;,locus:2182280; AT5G12960,AT5G12950 Putative glycosyl hydrolase of unknown function (DUF1680) Os02g0195500 protein,Os02g0195500 protein (Fragment),Os06g0612900 protein (Fragment) Q6H7P9,A0A0P0VFY4,A0A0P0VFX7,A0A0P0WZ40 Q6H7P9_ORYSJ,A0A0P0VFY4_ORYSJ,A0A0P0VFX7_ORYSJ,A0A0P0WZ40_ORYSJ Os02g0195500 OJ1225_F07.14 OsJ_05746 OSNPB_020195500,Os02g0195500 OSNPB_020195500,Os06g0612900 OSNPB_060612900 ENOG411DVUJ SCAR2 Q5XPJ9 SCAR2_ARATH Protein SCAR2 (AtSCAR2) (Protein DISTORTED 3) (Protein IRREGULAR TRICHOME BRANCH 1) (Protein WAVE4) Mutant plants showed irregularities in trichome branch positioning and expansion.,Mutant plants showed irregularities in trichome branch positioning and expansion. Disruption of actin and microtubule cytoskeleton organization was observed.,Mutant plants showed irregularities in trichome branch positioning and expansion,Dark-grown mutant lines occasionally exhibit severe cell expansion and adherence defects such that in some instances cells tear out of the epidermal tissue layer and bend away from the surface.,The mutants showed well-developed epidermal lobes and no significant difference with regart to the pavement cell complexity compared to wild type.,Weak distorted phenotype reminiscent of arp2-arp3 complex mutant trichomes: branches of mutant trichomes are often twisted and variable in length. Abnormal trichome morphology; Short hypocotyl in the dark-D. Oppenheimer-2002 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex. Regulates trichome branch positioning and expansion. {ECO:0000269|PubMed:15296761, ECO:0000269|PubMed:15316111, ECO:0000269|PubMed:15659634, ECO:0000269|PubMed:16006582}. 151585 Protein SCAR2 (AtSCAR2) (Protein DISTORTED 3) (Protein IRREGULAR TRICHOME BRANCH 1) (Protein WAVE4) cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; SCAR complex [GO:0031209]; actin binding [GO:0003779]; actin cytoskeleton organization [GO:0030036]; actin nucleation [GO:0045010]; positive regulation of actin nucleation [GO:0051127]; single organismal cell-cell adhesion [GO:0016337]; trichome branching [GO:0010091]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed in expanding cotyledons, expanding leaves and expanding siliques containing developing embryos. Lower expression, sometimes not detected, in unopened flower buds and in matures leaves. {ECO:0000269|PubMed:15534215, ECO:0000269|PubMed:15659634, ECO:0000269|PubMed:16006582}. locus:2057155; AT2G38440 NA SCAR-like protein 1,Os03g0816900 protein (Fragment),Os03g0817000 protein (Fragment) Q84TX2,Q0DMC7,Q0DMC6 SCRL1_ORYSJ,Q0DMC7_ORYSJ,Q0DMC6_ORYSJ Os03g0816900 Os03g0817000 LOC_Os03g60240 OSJNBa0094J08.20,Os03g0816900 Os03g0816900 OSNPB_030816900,Os03g0817000 OSNPB_030817000 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411DVUM Q9SA78,O64748,B3H5Z4 COPE1_ARATH,COPE2_ARATH,B3H5Z4_ARATH Coatomer subunit epsilon-1 (Epsilon-coat protein 1) (Epsilon-COP 1),Coatomer subunit epsilon-2 (Epsilon-coat protein 2) (Epsilon-COP 2),Coatomer epsilon subunit FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811434; 32602,32658,24084 Coatomer subunit epsilon-1 (Epsilon-coat protein 1) (Epsilon-COP 1),Coatomer subunit epsilon-2 (Epsilon-coat protein 2) (Epsilon-COP 2),Coatomer epsilon subunit COPI vesicle coat [GO:0030126]; Golgi membrane [GO:0000139]; vacuolar membrane [GO:0005774]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],structural molecule activity [GO:0005198]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2204644;,locus:2044792; AT1G30630,AT2G34840 Coatomer subunit Coatomer subunit epsilon-1 (Epsilon-coat protein 1) (Epsilon-COP 1) (Epsilon1-COP) Q9MAX6 COPE1_ORYSJ COPE1 Os04g0612600 LOC_Os04g52270 OsJ_015440 OSJNBa0070C17.12 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. ENOG411DVUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Possible lysine decarboxylase Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (EC 3.2.2.n1) (Protein LONELY GUY),Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8 (EC 3.2.2.n1) (Protein LONELY GUY-like 8),Os01g0588900 protein Q5ZC82,Q0DFG8,A0A0P0V4N4 LOG_ORYSJ,LOGL8_ORYSJ,A0A0P0V4N4_ORYSJ LOG Os01g0588900 LOC_Os01g40630 OsJ_02411 P0415C01.3,LOGL8 Os05g0591600 LOC_Os05g51390 OsJ_19750 OSJNBa0022J22.18 P0663C08.4,Os01g0588900 OSNPB_010588900 DISRUPTION PHENOTYPE: Premature termination of the floral meristem. {ECO:0000269|PubMed:17287810}. FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Controls the shoot meristem activity. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. Reacts specifically with cytokinin nucleoside 5'-monophosphates, but not with di-or triphosphate. {ECO:0000269|PubMed:17287810, ECO:0000269|PubMed:19837870}.,FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}. MISCELLANEOUS: The name lonely guy came from the fact that flowers of the mutants often contained only one stamen but no pistil. ENOG411DVU5 Q8GUS7 Q8GUS7_ARATH ARM repeat superfamily protein (Uncharacterized protein F10A12.11) 48734 ARM repeat superfamily protein (Uncharacterized protein F10A12.11) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2038598; AT2G27430 Inherit from KOG: Ubox domain-containing protein Os05g0573800 protein Q6F355 Q6F355_ORYSJ Os05g0573800 OJ1268_B08.1 OJ1735_C10.19 OSNPB_050573800 ENOG411DVU6 O22926 O22926_ARATH Major facilitator superfamily protein (Uncharacterized protein At2g30300) 54586 Major facilitator superfamily protein (Uncharacterized protein At2g30300) integral component of membrane [GO:0016021] locus:2065730; AT2G30300 Nodulin-like Nodulin-like protein (Os01g0825500 protein) (cDNA clone:001-013-G09, full insert sequence) (cDNA clone:J023026C12, full insert sequence),Os05g0475700 protein (cDNA clone:J013058N11, full insert sequence),Nodulin-like protein (Os01g0825500 protein) (cDNA clone:001-025-F06, full insert sequence),Os05g0475700 protein Q94D97,Q0DHC7,Q5QMA4,A0A0P0WNL1 Q94D97_ORYSJ,Q0DHC7_ORYSJ,Q5QMA4_ORYSJ,A0A0P0WNL1_ORYSJ P0439E11.14-1 P0031D02.50-1 Os01g0825500 OsJ_03920 OSNPB_010825500,Os05g0475700 Os05g0475700 OsJ_18910 OSNPB_050475700,P0439E11.14-2 Os01g0825500 P0031D02.50-2 OSNPB_010825500,Os05g0475700 OSNPB_050475700 ENOG411EFJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integrase core domain containing protein NA NA NA NA NA NA NA ENOG411EFJU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os02g0830400 protein,Os03g0817600 protein A0A0P0VRM1,A0A0P0W594 A0A0P0VRM1_ORYSJ,A0A0P0W594_ORYSJ Os02g0830400 OSNPB_020830400,Os03g0817600 OSNPB_030817600 ENOG411EFJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EFJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide deacetylase NA NA NA NA NA NA NA ENOG411EFJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIG2-like family Os06g0702700 protein (Putative avrRpt2-induced AIG2 protein) (cDNA clone:J023063C04, full insert sequence) Q5Z825 Q5Z825_ORYSJ Os06g0702700 OJ1215_E11.2 OSNPB_060702700 P0596H10.44 ENOG411EFJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EFJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EFJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFJX ARF46 Q9M0U1,B3H469 Y4563_ARATH,Y4261_ARATH B3 domain-containing protein At4g05630 (Protein AUXIN RESPONSE FACTOR 46),Putative B3 domain-containing protein At4g12617 14657,15066 B3 domain-containing protein At4g05630 (Protein AUXIN RESPONSE FACTOR 46),Putative B3 domain-containing protein At4g12617 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2121576;,locus:4515103381; AT4G05630,AT4G12617 NA NA NA NA NA NA NA NA ENOG411EFJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFJF LBD28 Q9SCS4 LBD28_ARATH LOB domain-containing protein 28 (ASYMMETRIC LEAVES 2-like protein 25) (AS2-like protein 25) 22465 LOB domain-containing protein 28 (ASYMMETRIC LEAVES 2-like protein 25) (AS2-like protein 25) locus:2098680; AT3G50510 Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411EFJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os02g0721100 protein (Putative ubiquitin conjugating enzyme 11),Os02g0721200 protein (Putative ubiquitin conjugating enzyme 11),Os02g0721500 protein Q6Z668,Q6Z667,A0A0P0VP46 Q6Z668_ORYSJ,Q6Z667_ORYSJ,A0A0P0VP46_ORYSJ Os02g0721100 OJ1008_D06.26 OSNPB_020721100 P0654B04.11,Os02g0721200 OJ1008_D06.27 OSNPB_020721200 P0654B04.12,Os02g0721500 OSNPB_020721500 ENOG411EFJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os05g0478800 protein (Fragment) A0A0P0WNQ6 A0A0P0WNQ6_ORYSJ Os05g0478800 OSNPB_050478800 ENOG411EFJC PLAT3 Q2V2V3 PLAT3_ARATH PLAT domain-containing protein 3 (AtPLAT3) (PLAT domain protein 3) 11687 PLAT domain-containing protein 3 (AtPLAT3) (PLAT domain protein 3) locus:1009023406; AT5G65158 PLAT/LH2 domain NA NA NA NA NA NA NA ENOG411EFJB MPI10.4 Q9LV38 Q9LV38_ARATH At5g56880 17471 At5g56880 locus:2170287; AT5G56880 NA NA NA NA NA NA NA NA ENOG411EFJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EFJN B3H742 B3H742_ARATH Uncharacterized protein 13923 Uncharacterized protein locus:4515103433; AT4G21902 NA NA NA NA NA NA NA NA ENOG411EFJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helicase associated domain NA NA NA NA NA NA NA ENOG411EFJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EFJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1823) NA NA NA NA NA NA NA ENOG411EFJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os09g0546700 protein (Putative auxin induced protein) Q651Q6 Q651Q6_ORYSJ Os09g0546700 OsJ_30217 OSJNBa0038K02.13 OSNPB_090546700 ENOG411EFJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Conserved hypothetical protein NA NA NA NA NA NA NA ENOG411EFJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0698748 protein Q5Z4U8 Q5Z4U8_ORYSJ P0545E05.31-1 Os06g0698748 OSNPB_060698748 ENOG411EFJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region family protein expressed Os10g0503800 protein (Remorin, C-terminal region family protein, expressed) (cDNA clone:J033075A20, full insert sequence) Q337E7 Q337E7_ORYSJ Os10g0503800 LOC_Os10g36000 OSNPB_100503800 ENOG411EFJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFJ3 Q1G3S9 Q1G3S9_ARATH At2g01913 16339 At2g01913 locus:1009023183; AT2G01913 NA NA NA NA NA NA NA NA ENOG411EFJ2 F6F9.13 Q9FXI0 Q9FXI0_ARATH At1g19830 (F6F9.13 protein) (SAUR-like auxin-responsive protein family) (Uncharacterized protein At1g19830/F14P1_25) 13331 At1g19830 (F6F9.13 protein) (SAUR-like auxin-responsive protein family) (Uncharacterized protein At1g19830/F14P1_25) response to auxin [GO:0009733] locus:2013074; AT1G19830 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411EFJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L28e protein family NA NA NA NA NA NA NA ENOG411EFJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os12g0624700 protein,Os12g0624400 protein (Fragment) Q2QLX8,A0A0P0YCB4 Q2QLX8_ORYSJ,A0A0P0YCB4_ORYSJ Os12g0624700 LOC_Os12g42950 OSNPB_120624700,Os12g0624400 OSNPB_120624400 ENOG411EKY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 17 (OsC3H17),Os02g0677700 protein (Fragment) Q0DYP5,A0A0P0VN45 C3H17_ORYSJ,A0A0P0VN45_ORYSJ Os02g0677700 LOC_Os02g45480,Os02g0677700 OSNPB_020677700 ENOG411EKY2 Q94AD8 FBW3_ARATH F-box/WD-40 repeat-containing protein At5g21040 60555 F-box/WD-40 repeat-containing protein At5g21040 cellular response to phosphate starvation [GO:0016036] locus:2147077; AT5G21040 F-box WD-40 repeat-containing protein Os04g0619700 protein (Fragment) A0A0P0WEV3 A0A0P0WEV3_ORYSJ Os04g0619700 OSNPB_040619700 ENOG411EKY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKY0 MFL8.15 Q9ZW85,F4IQ61 LEUD3_ARATH,F4IQ61_ARATH 3-isopropylmalate dehydratase small subunit 3 (EC 4.2.1.33) (AtLEUD3) (Isopropylmalate isomerase small subunit 3),Aconitase/3-isopropylmalate dehydratase protein DISRUPTION PHENOTYPE: Embryonic lethal when homozygous. {ECO:0000269|PubMed:20663849}. Female gametophyte defective; Embryo defective (inferred)-S. Chen-2010 FUNCTION: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. plays an essential role in leucine biosynthesis and female gametophyte development. {ECO:0000269|PubMed:20663849}. PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4. ARA:AT2G43090-MONOMER; 4.2.1.33; 4.2.1.33 26790,23724 3-isopropylmalate dehydratase small subunit 3 (EC 4.2.1.33) (AtLEUD3) (Isopropylmalate isomerase small subunit 3),Aconitase/3-isopropylmalate dehydratase protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3-isopropylmalate dehydratase activity [GO:0003861]; chloroplast organization [GO:0009658]; gametophyte development [GO:0048229]; glucosinolate biosynthetic process [GO:0019761]; leucine biosynthetic process [GO:0009098]; response to salt stress [GO:0009651] locus:2041081; AT2G43090 3-isopropylmalate dehydratase small 3-isopropylmalate dehydratase, small subunit-like (Os02g0655300 protein) (cDNA clone:001-207-D01, full insert sequence) (cDNA clone:002-186-A03, full insert sequence) (cDNA clone:006-311-A03, full insert sequence) Q6H6I1 Q6H6I1_ORYSJ Os02g0655300 OJ1003_B06.26 OsJ_07781 OSNPB_020655300 P0519E06.10 ENOG411EKY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-patch domain G-patch domain containing protein, expressed (Os10g0491900 protein) (cDNA, clone: J075100E01, full insert sequence) Q9FWV1 Q9FWV1_ORYSJ Os10g0491900 LOC_Os10g35000 Os10g0491900 OsJ_31996 OSJNBa0051D19.20 OSNPB_100491900 ENOG411EKY6 F4IC62 F4IC62_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein 28552 Polynucleotidyl transferase, ribonuclease H-like superfamily protein nucleic acid binding [GO:0003676]; transferase activity [GO:0016740]; rRNA 5'-end processing [GO:0000967] locus:1009023117; AT1G12244 holliday junction Expressed protein (Os10g0555200 protein) (cDNA clone:J023003I12, full insert sequence) Q9AV16 Q9AV16_ORYSJ LOC_Os10g40650 Os10g0555200 OsJ_32416 OSJNBb0014I11.5 OSNPB_100555200 ENOG411EKY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os03g0851600 protein (Transducin family protein, putative, expressed),Os03g0851600 protein,Os08g0511500 protein (Fragment) Q10AI1,A0A0P0W5N8,A0A0N7KQ46 Q10AI1_ORYSJ,A0A0P0W5N8_ORYSJ,A0A0N7KQ46_ORYSJ Os03g0851600 LOC_Os03g63470 OSNPB_030851600,Os03g0851600 OSNPB_030851600,Os08g0511500 OSNPB_080511500 ENOG411EKY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os01g0187500 protein (Fragment) C7IWC0 C7IWC0_ORYSJ Os01g0187500 Os01g0187500 OSNPB_010187500 ENOG411EKY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain NA NA NA NA NA NA NA ENOG411EKY8 MAH20.10 Q93VT6 Q93VT6_ARATH Ribosomal RNA small subunit methyltransferase J (Uncharacterized protein At5g08540) 38655 Ribosomal RNA small subunit methyltransferase J (Uncharacterized protein At5g08540) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536]; methyltransferase activity [GO:0008168] locus:2159532; AT5G08540 NA NA NA NA NA NA NA NA ENOG411EKYC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated NA NA NA NA NA NA NA ENOG411EKYB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated ABC transporter G family member 34 (OsABCG34) (Pleiotropic drug resistance protein 10) (OsPDR10) Q7PC80 AB34G_ORYSJ ABCG34 PDR1 PDR10 Os01g0609000 LOC_Os01g42350 P0410E03.4 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411EKYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated NA NA NA NA NA NA NA ENOG411EKYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class II (A) NA NA NA NA NA NA NA ENOG411EKYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein SPIRAL1-like 3 Q2QQ99 SP1L3_ORYSJ Os12g0502000 LOC_Os12g31780 OsJ_36193 FUNCTION: Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth. {ECO:0000250}. ENOG411EKYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated ABC transporter G family member 45 (OsABCG45) (Pleiotropic drug resistance protein 1) (OsPDR1),Os08g0544400 protein (Fragment) Q8GU82,A0A0N7KQ86 AB45G_ORYSJ,A0A0N7KQ86_ORYSJ ABCG45 PDR1 Os08g0544400 LOC_Os08g43120 P0623F08.24,Os08g0544400 OSNPB_080544400 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411EKYD ABCG40 Q9M9E1,A0A1P8AW07 AB40G_ARATH,A0A1P8AW07_ARATH ABC transporter G family member 40 (ABC transporter ABCG.40) (AtABCG40) (Pleiotropic drug resistance protein 12),Pleiotropic drug resistance 12 DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici. {ECO:0000269|PubMed:26011556}. Increased sensitivity to drought stress. Sensitive to drought; Slow stomatal closure in response to ABA-Y. Lee-2010 FUNCTION: May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol (PubMed:14526118, PubMed:15923333). {ECO:0000250|UniProtKB:Q76CU2, ECO:0000269|PubMed:14526118, ECO:0000269|PubMed:15923333}.; FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:26011556}. 161017,145836 ABC transporter G family member 40 (ABC transporter ABCG.40) (AtABCG40) (Pleiotropic drug resistance protein 12),Pleiotropic drug resistance 12 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; abscisic acid transport [GO:0080168]; defense response to oomycetes [GO:0002229]; drug transmembrane transport [GO:0006855]; lead ion transport [GO:0015692]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to ozone [GO:0010193]; response to salicylic acid [GO:0009751]; terpenoid transport [GO:0046865],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810] TISSUE SPECIFICITY: Ubiquitous with higher levels in leaves, stems and flowers. {ECO:0000269|PubMed:12430018, ECO:0000269|PubMed:14526118, ECO:0000269|PubMed:15923333}. locus:2196593; AT1G15520 Pleiotropic drug resistance protein NA NA NA NA NA NA NA ENOG411EKYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0130600 protein (cDNA clone:J023041I07, full insert sequence) Q6ZG95 Q6ZG95_ORYSJ Os02g0130600 OJ1007_D04.9 OsJ_05246 OSNPB_020130600 ENOG411EKYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EKYM AP22.13 Q94K88,F4JRB6 Q94K88_ARATH,F4JRB6_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At4g37210),Tetratricopeptide repeat (TPR)-like superfamily protein 52275,40592 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At4g37210),Tetratricopeptide repeat (TPR)-like superfamily protein locus:2115045; AT4G37210 SHNi-TPR NA NA NA NA NA NA NA ENOG411EKYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EKYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EKYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EKYW MWD22.12 Q949V0 Q949V0_ARATH AT5G51180 protein (Alpha/beta-Hydrolases superfamily protein) (Uncharacterized protein At5g51180) 40043 AT5G51180 protein (Alpha/beta-Hydrolases superfamily protein) (Uncharacterized protein At5g51180) carboxylic ester hydrolase activity [GO:0052689]; cellular lipid metabolic process [GO:0044255] locus:2176172; AT5G51180 serine esterase family protein NA NA NA NA NA NA NA ENOG411EKYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger Nucleolin-related protein NRP-like (Os07g0690300 protein),Os07g0690300 protein (Fragment) Q7F0H9,A0A0P0XAG1 Q7F0H9_ORYSJ,A0A0P0XAG1_ORYSJ P0597G07.119-1 Os07g0690300 OSNPB_070690300,Os07g0690300 OSNPB_070690300 ENOG411EKYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EKYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os12g0209700 protein (Fragment) A0A0P0Y808 A0A0P0Y808_ORYSJ Os12g0209700 OSNPB_120209700 ENOG411EKYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative serine esterase (DUF676) NA NA NA NA NA NA NA ENOG411EKYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative serine esterase (DUF676) Os02g0655600 protein,Os02g0655600 protein (Fragment) C7IYB3,A0A0P0VMP7 C7IYB3_ORYSJ,A0A0P0VMP7_ORYSJ Os02g0655600 Os02g0655600 OSNPB_020655600,Os02g0655600 OSNPB_020655600 ENOG411EKYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative serine esterase (DUF676) Os08g0447300 protein A0A0P0XGM9 A0A0P0XGM9_ORYSJ Os08g0447300 OSNPB_080447300 ENOG411DV51 MDK4.6 O81838,Q9FL72 O81838_ARATH,Q9FL72_ARATH Membrane lipoprotein lipid attachment site-like protein, putative (DUF1223) (Uncharacterized protein At4g27350),Membrane lipoprotein lipid attachment site-like protein, putative (DUF1223) 30379,30627 Membrane lipoprotein lipid attachment site-like protein, putative (DUF1223) (Uncharacterized protein At4g27350),Membrane lipoprotein lipid attachment site-like protein, putative (DUF1223) locus:2131754;,locus:2162595; AT4G27350,AT5G54240 secreted protein Membrane lipoprotein lipid attachment site-containing protein-like (Os07g0559400 protein) Q6Z402 Q6Z402_ORYSJ Os07g0559400 Os07g0559400 OsJ_24725 OSNPB_070559400 P0567H04.23 ENOG411DV50 Q6DST9,Q9C7R3,A0A1P8AUE5 Q6DST9_ARATH,Q9C7R3_ARATH,A0A1P8AUE5_ARATH Beta-1,3 glucanase (Carbohydrate-binding X8 domain superfamily protein),Beta-1,3 glucanase, putative; 26636-27432 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein 30688,21901,25640 Beta-1,3 glucanase (Carbohydrate-binding X8 domain superfamily protein),Beta-1,3 glucanase, putative; 26636-27432 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:2013728; AT1G29380 X8 domain Beta 1,3-glucanase-like (Os01g0631500 protein) (cDNA clone:001-113-F12, full insert sequence) Q8RZK0 Q8RZK0_ORYSJ Os01g0631500 B1158C05.10 OsJ_02710 OSNPB_010631500 ENOG411DV53 UNE10 Q8GZ38,A0A1P8B885,A0A1P8B876 UNE10_ARATH,A0A1P8B885_ARATH,A0A1P8B876_ARATH Transcription factor UNE10 (Basic helix-loop-helix protein 16) (AtbHLH16) (bHLH 16) (Protein UNFERTILIZED EMBRYO SAC 10) (Transcription factor EN 108) (bHLH transcription factor bHLH016),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein DISRUPTION PHENOTYPE: Plants exhibit unfertilized ovules but normal pollen tube attraction. {ECO:0000269|PubMed:15634699}. FUNCTION: Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. 43365,41774,32514 Transcription factor UNE10 (Basic helix-loop-helix protein 16) (AtbHLH16) (bHLH 16) (Protein UNFERTILIZED EMBRYO SAC 10) (Transcription factor EN 108) (bHLH transcription factor bHLH016),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; double fertilization forming a zygote and endosperm [GO:0009567]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. locus:2126876; AT4G00050 Transcription factor Os10g0556200 protein A0A0P0XX67 A0A0P0XX67_ORYSJ Os10g0556200 OSNPB_100556200 ENOG411DV55 CBR1 Q9ZNT1 NB5R1_ARATH NADH--cytochrome b5 reductase 1 (EC 1.6.2.2) No detectable differences from wild type in growth development or seed set.,The proportion of 18:3 in the seed oil is decreased in mutant and there is a concomitant increase in the proportion of 18:1 compared with wild type.,A decrease in 18:3 content was observed in the mutant seeds but it is much less than the decrease in 18:1-OH + 18:2-OH. Low hydroxyl fatty acid levels in seeds-J. Browse-2006 FUNCTION: Reductase transferring electrons from NADH to cytochrome b5. Required for the NADH-dependent electron transfer involved in the desaturation and hydroxylation of fatty acids and in the desaturation of sterol precursors. No activity with NADPH as electron donor. {ECO:0000269|PubMed:17227547, ECO:0000269|PubMed:9880378}. ARA:AT5G17770-MONOMER; R-ATH-114608;R-ATH-1237044;R-ATH-6798695; 1.6.2.2 31490 NADH--cytochrome b5 reductase 1 (EC 1.6.2.2) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; mitochondrial outer membrane [GO:0005741]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; cytochrome-b5 reductase activity, acting on NAD(P)H [GO:0004128]; electron transport chain [GO:0022900] TISSUE SPECIFICITY: Expressed in roots, stems, flowers and siliques. Detected in leaves. {ECO:0000269|PubMed:9880378}. locus:2176001; AT5G17770 b5 reductase NADH-cytochrome b5 reductase (EC 1.6.2.2) Q5N760,Q6AVN1 Q5N760_ORYSJ,Q6AVN1_ORYSJ Os01g0814900 OsJ_03855 OSJNBa0085D07.31 OSNPB_010814900,Os05g0488900 Os05g0488900 OJ1119_H02.12 OSNPB_050488900 ENOG411DV54 CYS6 Q8H0X6 CYT6_ARATH Cysteine proteinase inhibitor 6 (AtCYS-6) (PIP-M) (PRLI-interacting factor M) Early germination; Fast seedling growth-C. Lim-2009 FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. 26294 Cysteine proteinase inhibitor 6 (AtCYS-6) (PIP-M) (PRLI-interacting factor M) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; cobalt ion binding [GO:0050897]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; protease binding [GO:0002020]; defense response [GO:0006952]; hyperosmotic response [GO:0006972]; negative regulation of cysteine-type endopeptidase activity [GO:2000117]; response to cold [GO:0009409]; response to oxidative stress [GO:0006979]; response to water deprivation [GO:0009414] locus:2092492; AT3G12490 Cysteine proteinase inhibitor Cysteine proteinase inhibitor 12 (Oryzacystatin XII) (OC-XII) (Oryzacystatin-12),Cysteine proteinase inhibitor (Fragment) Q0JNR2,A0A0P0V179 CYT12_ORYSJ,A0A0P0V179_ORYSJ Os01g0270100 LOC_Os01g16430 P0667A10.20,Os01g0270100 OSNPB_010270100 FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. ENOG411DV57 EB1C Q9FGQ6 EB1C_ARATH Microtubule-associated protein RP/EB family member 1C (APC-binding protein EB1C) (End-binding protein 1C) (AtEB1C) (Protein ATEB1 homolog 1) (AtEB1H1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but seedlings show increased sensitivity to oryzalin, a microtubule-destabilizing agent. conditions. {ECO:0000269|PubMed:18281505, ECO:0000269|PubMed:20067996}. Plants grown on agar plants show leftward skewing of root growth occasionally forming clockwise spirals with twisted epidermal cell files. Thin roots that grow in a clockwise spiral fashion-S. Bisgrove-2008 FUNCTION: Plant-specific EB1 subtype that functions preferentially at early stages of plant mitosis by regulating spindle positioning and chromosome segregation. Accumulates in the prophase nucleus and is required to maintain spindle bipolarity during premetaphase and/or metaphase and for efficient segregation of chromosomes at anaphase. May play a role in the dynamics of microtubule network in elongating pollen tubes. {ECO:0000269|PubMed:19825573, ECO:0000269|PubMed:20067996}. MISCELLANEOUS: Plant microtubules behave differently from those of other eukaryotes in mitosis: they lack centrosomes and spindles are barrel-shaped with unfocused poles and no astral microtubules. {ECO:0000305|PubMed:18281505}. 36386 Microtubule-associated protein RP/EB family member 1C (APC-binding protein EB1C) (End-binding protein 1C) (AtEB1C) (Protein ATEB1 homolog 1) (AtEB1H1) cell wall [GO:0005618]; microtubule [GO:0005874]; nucleolus [GO:0005730]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; cortical cytoskeleton organization [GO:0030865]; thigmotropism [GO:0009652] TISSUE SPECIFICITY: Highly expressed in the root and shoot meristems, in guard cells of leaf stomata, pollen grains and pollen tubes. {ECO:0000269|PubMed:20067996}. locus:2157177; AT5G67270 Microtubule-associated protein RP EB family Microtubule-associated EB1 family protein, putative, expressed (Os10g0498900 protein) (Putative microtubule-associated protein) Q8LNH6 Q8LNH6_ORYSJ LOC_Os10g35580 Os10g0498900 OsJ_32048 OSJNBa0078O01.4 OSNPB_100498900 ENOG411DV56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) Os12g0556900 protein A0A0P0YB79 A0A0P0YB79_ORYSJ Os12g0556900 OSNPB_120556900 ENOG411DV59 Q7XJ53 P2C35_ARATH Probable protein phosphatase 2C 35 (AtPP2C35) (EC 3.1.3.16) R-ATH-70895; 3.1.3.16 38330 Probable protein phosphatase 2C 35 (AtPP2C35) (EC 3.1.3.16) plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2082465; AT3G06270 phosphatase 2C NA NA NA NA NA NA NA ENOG411DV58 ERCC1 Q9MA98,A0A1I9LSV8 ERCC1_ARATH,A0A1I9LSV8_ARATH DNA excision repair protein ERCC-1 (AtERCC1) (AtRAD10) (EC 3.1.-.-) (Ultraviolet hypersensitive 7),Nucleotide repair protein FUNCTION: Seems to be involved in nucleotide excision repair (NER) of damaged DNA (dark repair mechanism). The UVH1/RAD1-ERCC1/RAD10 complex may act as an endonuclease making DNA incision 5' to the lesion site. In vitro, is implicated in double strand breaks (DSBs) repair and is required for homologous recombination in the presence of non-homologous overhangs. In vitro, is involved in chromosomal recombination between tandem repeats in both direct and inverted orientations. May mediate the induction of a DNA-damage sensitive cell-cycle checkpoint during the G2 phase. {ECO:0000269|PubMed:12554710, ECO:0000269|PubMed:15255863}. R-ATH-5696395;R-ATH-5696400;R-ATH-6782135; 3.1.-.- 45748,32631 DNA excision repair protein ERCC-1 (AtERCC1) (AtRAD10) (EC 3.1.-.-) (Ultraviolet hypersensitive 7),Nucleotide repair protein ERCC4-ERCC1 complex [GO:0070522]; nucleotide-excision repair factor 1 complex [GO:0000110]; 5'-flap endonuclease activity [GO:0017108]; damaged DNA binding [GO:0003684]; single-stranded DNA binding [GO:0003697]; single-stranded DNA endodeoxyribonuclease activity [GO:0000014]; double-strand break repair via homologous recombination [GO:0000724]; meiotic mismatch repair [GO:0000710]; mitotic recombination [GO:0006312]; non-photoreactive DNA repair [GO:0010213]; nucleotide-excision repair, DNA incision, 5'-to lesion [GO:0006296]; nucleotide-excision repair, preincision complex assembly [GO:0006294]; response to gamma radiation [GO:0010332]; response to UV-B [GO:0010224]; UV-damage excision repair [GO:0070914],nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; endonuclease activity [GO:0004519]; DNA repair [GO:0006281] locus:2096329; AT3G05210 DNA excision repair protein DNA excision repair protein ERCC-1, putative, expressed (Os10g0518900 protein) (cDNA clone:J023070H24, full insert sequence) Q337B1 Q337B1_ORYSJ Os10g0518900 LOC_Os10g37490 Os10g0518900 OSNPB_100518900 ENOG411DV5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase E3 ubiquitin-protein ligase DIS1 (EC 2.3.2.27) (Drought-induced SINA protein 1) (OsDIS1) (RING-type E3 ubiquitin transferase DIS1),E3 ubiquitin-protein ligase (EC 2.3.2.27) Q10L91,Q7XAM5 DIS1_ORYSJ,Q7XAM5_ORYSJ DIS1 Os03g0356414 LOC_Os03g24040,OJ1477_F01.127 P0496C02.112 Os07g0659800 OSNPB_070659800 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (Probable). Plays a negative role in drought stress tolerance through transcriptional and post-translational regulation of diverse stress-related genes. Interacts with the serine/threonine-protein kinase NEK6 and promotes its degradation via the 26S proteasome-dependent pathway (PubMed:21719639). {ECO:0000269|PubMed:21719639, ECO:0000305|PubMed:21719639}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. MISCELLANEOUS: Plants overexpressing DIS1 exhibit reduced drought tolerance. Plants silencing DIS1 show enhanced drought tolerance. {ECO:0000269|PubMed:21719639}. ENOG411DV5C F22O6_120 Q9SVD1 Q9SVD1_ARATH At3g52500 (Eukaryotic aspartyl protease family protein) (Uncharacterized protein At3g52500) (Uncharacterized protein F22O6_120) 51005 At3g52500 (Eukaryotic aspartyl protease family protein) (Uncharacterized protein At3g52500) (Uncharacterized protein F22O6_120) cell wall [GO:0005618]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2079919; AT3G52500 aspartic proteinase Os04g0685200 protein (Fragment),Os03g0281400 protein Q0J8V7,Q8H8W4 Q0J8V7_ORYSJ,Q8H8W4_ORYSJ Os04g0685200 Os04g0685200 OSNPB_040685200,Os03g0281400 OSNPB_030281400 ENOG411DV5B psbD P56761 PSBD_ARATH Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) FUNCTION: Photosystem II (PSII) is a light-driven water: plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. {ECO:0000255|HAMAP-Rule:MF_01383}. MISCELLANEOUS: 2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water. {ECO:0000255|HAMAP-Rule:MF_01383}. MetaCyc:ATCG00270-MONOMER; 1.10.3.9 39548 Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; photosynthetic electron transport in photosystem II [GO:0009772]; protein-chromophore linkage [GO:0018298] locus:504954651; ATCG00270 One of the two reaction center proteins of photosystem II (PSII) D2 is needed for assembly of a stable PSII complex (By similarity) Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) P0C437 PSBD_ORYSJ psbD LOC_Osp1g00170 Nip018 FUNCTION: Photosystem II (PSII) is a light-driven water: plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. {ECO:0000255|HAMAP-Rule:MF_01383}. MISCELLANEOUS: 2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water. {ECO:0000255|HAMAP-Rule:MF_01383}. ENOG411DV5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase NA NA NA NA NA NA NA ENOG411DV5D ECI1 O04469 ECI1_ARATH Enoyl-CoA delta isomerase 1, peroxisomal (EC 5.3.3.8) (Delta(3),Delta(2)-enoyl CoA isomerase 1) (AtECI1) Although the gene that is mutated in this plant encodes a protein that is 49% identical to the IBR10 protein implicated in indole-3-butyric acid (IBA) responses this mutant displays a normal wild-type IBA response. FUNCTION: Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Essential for the beta oxidation of unsaturated fatty acids. {ECO:0000269|PubMed:18657232}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. {ECO:0000305}. ARA:AT1G65520-MONOMER;MetaCyc:AT1G65520-MONOMER; 5.3.3.8 25908 Enoyl-CoA delta isomerase 1, peroxisomal (EC 5.3.3.8) (Delta(3),Delta(2)-enoyl CoA isomerase 1) (AtECI1) peroxisome [GO:0005777]; dodecenoyl-CoA delta-isomerase activity [GO:0004165]; fatty acid beta-oxidation [GO:0006635]; fatty acid catabolic process [GO:0009062] locus:2034178; AT1G65520 (delta(3) delta(2)-enoyl coa isomerase 1) NA NA NA NA NA NA NA ENOG411DV5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein Os11g0700100 protein,Os11g0588600 protein,Os08g0170800 protein (Fragment),NB-ARC domain containing protein, expressed (Os11g0588400 protein),NB-ARC domain containing protein, expressed (Os11g0590700 protein) (cDNA clone:J013082K15, full insert sequence),Os11g0589401 protein,Os08g0150150 protein,Os05g0240200 protein (Fragment),Os11g0591000 protein (Fragment),Os11g0590400 protein,Os11g0588400 protein (Fragment),Os07g0294100 protein,Os08g0170200 protein,Os08g0170150 protein,Os11g0589800 protein (Fragment),Os11g0589100 protein,Os11g0590900 protein,Os11g0130900 protein (Fragment),Os11g0589200 protein,Os11g0590100 protein C7J8N7,C7J9B9,Q0J7Q8,Q2R1X5,Q2R1W3,A0A0P0Y410,A0A0P0XBQ3,A0A0P0WJS2,A0A0P0Y3V6,A0A0P0Y3S1,A0A0P0Y454,A0A0N7KNA1,A0A0P0XCF1,A0A0P0XC72,A0A0P0WJS3,A0A0P0Y3T5,A0A0P0Y4L9,A0A0P0Y3V8,A0A0P0WJS6,A0A0P0XYC6,A0A0P0Y4B2,A0A0N7KT54 C7J8N7_ORYSJ,C7J9B9_ORYSJ,Q0J7Q8_ORYSJ,Q2R1X5_ORYSJ,Q2R1W3_ORYSJ,A0A0P0Y410_ORYSJ,A0A0P0XBQ3_ORYSJ,A0A0P0WJS2_ORYSJ,A0A0P0Y3V6_ORYSJ,A0A0P0Y3S1_ORYSJ,A0A0P0Y454_ORYSJ,A0A0N7KNA1_ORYSJ,A0A0P0XCF1_ORYSJ,A0A0P0XC72_ORYSJ,A0A0P0WJS3_ORYSJ,A0A0P0Y3T5_ORYSJ,A0A0P0Y4L9_ORYSJ,A0A0P0Y3V8_ORYSJ,A0A0P0WJS6_ORYSJ,A0A0P0XYC6_ORYSJ,A0A0P0Y4B2_ORYSJ,A0A0N7KT54_ORYSJ Os11g0700100 OSNPB_110700100,Os11g0588600 OSNPB_110588600,Os08g0170800 Os08g0170800 OSNPB_080170800,Os11g0588400 LOC_Os11g37740 OSNPB_110588400,Os11g0590700 LOC_Os11g37860 Os11g0590700 OSNPB_110590700,Os11g0589401 OSNPB_110589401,Os08g0150150 OSNPB_080150150,Os05g0240200 OSNPB_050240200,Os11g0591000 OSNPB_110591000,Os11g0590400 OSNPB_110590400,Os11g0588400 OSNPB_110588400,Os07g0294100 OSNPB_070294100,Os08g0170200 OSNPB_080170200,Os08g0170150 OSNPB_080170150,Os11g0589800 OSNPB_110589800,Os11g0589100 OSNPB_110589100,Os11g0590900 OSNPB_110590900,Os11g0130900 OSNPB_110130900,Os11g0589200 OSNPB_110589200,Os11g0590100 OSNPB_110590100 ENOG411DV5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PXA domain Os05g0583500 protein (Unknow protein),Os05g0583500 protein (Fragment) Q75HY6,A0A0P0WRB3 Q75HY6_ORYSJ,A0A0P0WRB3_ORYSJ Os05g0583500 Os05g0583500 OSJNBb0035N21.8 OSNPB_050583500,Os05g0583500 OSNPB_050583500 ENOG411DV5I NCBP Q9FK59 IF4E5_ARATH Eukaryotic translation initiation factor NCBP (Novel cap-binding protein) (nCBP) (mRNA cap-binding protein) FUNCTION: Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. {ECO:0000269|PubMed:9553087}. 25745 Eukaryotic translation initiation factor NCBP (Novel cap-binding protein) (nCBP) (mRNA cap-binding protein) cytosol [GO:0005829]; translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417] locus:2172339; AT5G18110 Translation initiation factor Eukaryotic translation initiation factor NCBP (Novel cap-binding protein) (nCBP) (mRNA cap-binding protein) Q10NQ9 IF4E3_ORYSJ NCBP Os03g0262400 LOC_Os03g15590 OsJ_10222 FUNCTION: Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. ENOG411DV5H ITPK3,ITPK2,3 Q9SUG3,O81893,F4JG14,A8MRH2,A0A1P8B5H0 ITPK3_ARATH,ITPK2_ARATH,F4JG14_ARATH,A8MRH2_ARATH,A0A1P8B5H0_ARATH Inositol-tetrakisphosphate 1-kinase 3 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 3) (AtItpk-3) (Inositol-triphosphate 5/6-kinase 3) (Ins(1,3,4)P(3) 5/6-kinase 3) (EC 2.7.1.159),Inositol-tetrakisphosphate 1-kinase 2 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 2) (AtItpk-2) (Inositol-triphosphate 5/6-kinase 2) (Ins(1,3,4)P(3) 5/6-kinase 2) (EC 2.7.1.159),Inositol 1,3,4-trisphosphate 5/6-kinase family protein,Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134) DISRUPTION PHENOTYPE: Distorted seed coat with reduced mucilage content and decreased suberin and cutin composition. Crumpled columellas. {ECO:0000269|PubMed:23595027}. FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 to form InsP5 (PubMed:17698066). This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not (By similarity). Also phosphorylates Ins(1,3,4)P3 or a racemic mixture of Ins(1,4,6)P3 and Ins(3,4,6)P3 to form InsP4 (PubMed:17698066). Ins(1,3,4,6)P4 is an essential molecule in the hexakisphosphate (InsP6) pathway (By similarity). {ECO:0000250|UniProtKB:Q13572, ECO:0000269|PubMed:17698066}.,FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 to form InsP5 (PubMed:17698066). This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not (By similarity). Also phosphorylates Ins(1,3,4)P3 or a racemic mixture of Ins(1,4,6)P3 and Ins(3,4,6)P3 to form InsP4 (PubMed:17698066). Ins(1,3,4,6)P4 is an essential molecule in the hexakisphosphate (InsP6) pathway (By similarity). Plays a role in seed coat development and lipid polyester barrier formation (PubMed:23595027). {ECO:0000250|UniProtKB:Q13572, ECO:0000269|PubMed:17698066, ECO:0000269|PubMed:23595027}.,FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. {ECO:0000256|PIRNR:PIRNR038186}. ARA:AT4G08170-MONOMER;,ARA:AT4G33770-MONOMER; R-ATH-1855167;R-ATH-1855204;R-ATH-983231; 2.7.1.159; 2.7.1.134; 2.7.1.159,2.7.1.134 39631,44172,24981,33731,24855 Inositol-tetrakisphosphate 1-kinase 3 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 3) (AtItpk-3) (Inositol-triphosphate 5/6-kinase 3) (Ins(1,3,4)P(3) 5/6-kinase 3) (EC 2.7.1.159),Inositol-tetrakisphosphate 1-kinase 2 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 2) (AtItpk-2) (Inositol-triphosphate 5/6-kinase 2) (Ins(1,3,4)P(3) 5/6-kinase 2) (EC 2.7.1.159),Inositol 1,3,4-trisphosphate 5/6-kinase family protein,Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; inositol tetrakisphosphate 1-kinase activity [GO:0047325]; inositol-1,3,4-trisphosphate 5-kinase activity [GO:0052726]; inositol-1,3,4-trisphosphate 6-kinase activity [GO:0052725]; magnesium ion binding [GO:0000287]; inositol trisphosphate metabolic process [GO:0032957]; response to wounding [GO:0009611],intracellular [GO:0005622]; ATP binding [GO:0005524]; inositol tetrakisphosphate 1-kinase activity [GO:0047325]; inositol-1,3,4-trisphosphate 5-kinase activity [GO:0052726]; inositol-1,3,4-trisphosphate 6-kinase activity [GO:0052725]; magnesium ion binding [GO:0000287]; inositol trisphosphate metabolic process [GO:0032957]; seed coat development [GO:0010214],intracellular [GO:0005622]; ATP binding [GO:0005524]; inositol tetrakisphosphate 1-kinase activity [GO:0047325]; inositol-1,3,4-trisphosphate 5-kinase activity [GO:0052726]; inositol-1,3,4-trisphosphate 6-kinase activity [GO:0052725]; magnesium ion binding [GO:0000287]; inositol trisphosphate metabolic process [GO:0032957] DEVELOPMENTAL STAGE: Expressed in the seed coat of developing seeds from 2 to 6 days after fertilization. {ECO:0000269|PubMed:23595027}. TISSUE SPECIFICITY: Highly expressed in leaves and flowers, and at lower levels in roots, stems, cauline leaves and siliques. {ECO:0000269|PubMed:17698066, ECO:0000269|PubMed:23595027}.,TISSUE SPECIFICITY: Expressed in seedling roots, cotyledons, rosette leaves, cauline leaves, stems, flowers, siliques and seeds. {ECO:0000269|PubMed:17698066, ECO:0000269|PubMed:23595027}. locus:2132487;,locus:2134253; AT4G08170,AT4G33770 Inositol-tetrakisphosphate 1-kinase Inositol-tetrakisphosphate 1-kinase 2 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 2) (Inositol-triphosphate 5/6-kinase 2) (Ins(1,3,4)P(3) 5/6-kinase 2) (OsITP5/6K-2) (OsITPK2) (EC 2.7.1.159) (OsITL1) (Protein DROUGHT- AND SALT-SENSITIVE MUTANT 3) (OsDSM3),Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (Inositol-triphosphate 5/6-kinase 1) (Ins(1,3,4)P(3) 5/6-kinase 1) (OsITP5/6K-1) (OsITPK1) (EC 2.7.1.159) (OsITL2),Inositol-tetrakisphosphate 1-kinase 3 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 3) (Inositol-triphosphate 5/6-kinase 3) (Ins(1,3,4)P(3) 5/6-kinase 3) (OsITP5/6K-3) (OsITPK3) (EC 2.7.1.159) Q10PL5,Q33BI9,Q75GI4 ITPK2_ORYSJ,ITPK1_ORYSJ,ITPK3_ORYSJ ITPK2 DSM3 ITL1 Os03g0230500 LOC_Os03g12840 OJ1017C11.3 OJ1781E12.6 OsJ_10020,ITPK1 Os10g0103800 LOC_Os10g01480 OsJ_30457 OSJNBa0071K19.6,ITPK3 OsIPK1?? (OsMIK) Os03g0726200 LOC_Os03g51610 OsJ_12420 OSJNBa0013A09.13 OSJNBb0122C16.11 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased sensitivity to salt and drought stresses. {ECO:0000269|PubMed:22038091}. FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds (By similarity). May be involved in the negative regulation of osmotic stress signaling (PubMed:18421420, PubMed:22038091). {ECO:0000250|UniProtKB:Q84Y01, ECO:0000269|PubMed:18421420, ECO:0000269|PubMed:22038091}.,FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000250|UniProtKB:Q84Y01}. ENOG411DV5K Q9CAP1 Q9CAP1_ARATH At1g77670 (Putative aminotransferase; 101422-99564) (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein) ARA:AT1G77670-MONOMER; R-ATH-70614;R-ATH-71182;R-ATH-71240; 48709 At1g77670 (Putative aminotransferase; 101422-99564) (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein) chloroplast [GO:0009507]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; biosynthetic process [GO:0009058] locus:2204660; AT1G77670 Aminotransferase Aminotransferase (Os09g0453800 protein) (Putative cysteine conjugate beta-lyase) (cDNA clone:J013050C15, full insert sequence),Os09g0453800 protein Q67UZ0,A0A0P0XMX9 Q67UZ0_ORYSJ,A0A0P0XMX9_ORYSJ Os09g0453800 OsIDI4 Os09g0453800 OSNPB_090453800 P0488D02.27,Os09g0453800 OSNPB_090453800 ENOG411DV5J A0A1P8B4R3,Q93XX0,Q93ZW4,A0A1P8B4Q6,A0A1P8ANQ6,A0A1P8B4R5,F4JLP0 A0A1P8B4R3_ARATH,Q93XX0_ARATH,Q93ZW4_ARATH,A0A1P8B4Q6_ARATH,A0A1P8ANQ6_ARATH,A0A1P8B4R5_ARATH,F4JLP0_ARATH TMPIT-like protein,TMPIT-like protein (Uncharacterized protein At4g10430) (Uncharacterized protein At4g10430; F7L13.10),TMPIT-like protein (Uncharacterized protein At1g33230) 34063,39895,40014,35299,40572,26685,28858 TMPIT-like protein,TMPIT-like protein (Uncharacterized protein At4g10430) (Uncharacterized protein At4g10430; F7L13.10),TMPIT-like protein (Uncharacterized protein At1g33230) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; membrane [GO:0016020] locus:2127701;,locus:2196668; AT4G10430,AT1G33230 transmembrane protein 120 Os02g0106800 protein,Os08g0152800 protein Q6ETC8,A0A0P0XBR8 Q6ETC8_ORYSJ,A0A0P0XBR8_ORYSJ Os02g0106800 Os02g0106800 OJ1359_D06.29 OsJ_05033 OSNPB_020106800,Os08g0152800 OSNPB_080152800 ENOG411DV5M VP22-2,VP22-1 Q9LIJ4,Q5M759 VP222_ARATH,VP221_ARATH Putative vacuolar protein sorting-associated protein 22 homolog 2,Vacuolar protein sorting-associated protein 22 homolog 1 (AtVPS22-1) (ESCRT-II complex subunit VPS22 homolog 1) FUNCTION: Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex (By similarity). {ECO:0000250}. R-ATH-917729; 13629,28310 Putative vacuolar protein sorting-associated protein 22 homolog 2,Vacuolar protein sorting-associated protein 22 homolog 1 (AtVPS22-1) (ESCRT-II complex subunit VPS22 homolog 1) ESCRT II complex [GO:0000814]; protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328] locus:2116357; AT3G31960,AT4G27040 Vacuolar protein sorting-associated protein 22 homolog Vacuolar protein sorting-associated protein,Os11g0670800 protein (Fragment) A0A0P0XQU3,A0A0P0Y553,A0A0P0Y538 A0A0P0XQU3_ORYSJ,A0A0P0Y553_ORYSJ,A0A0P0Y538_ORYSJ Os09g0529700 OSNPB_090529700,Os11g0670700 OSNPB_110670700,Os11g0670800 OSNPB_110670800 FUNCTION: Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. {ECO:0000256|PIRNR:PIRNR017215}. ENOG411DV5N MAP65-7,MAP65-6 Q8L836,Q9SIS3 MA657_ARATH,MA656_ARATH 65-kDa microtubule-associated protein 7 (AtMAP65-7),65-kDa microtubule-associated protein 6 (AtMAP65-6) FUNCTION: Microtubule-associated protein that mediates the formation of a mesh-like stable and dense network formed by individual microtubules (MT). Confers MT resistance to high concentration of NaCl. {ECO:0000269|PubMed:15908607}. 69061,69407 65-kDa microtubule-associated protein 7 (AtMAP65-7),65-kDa microtubule-associated protein 6 (AtMAP65-6) cytoplasm [GO:0005737]; microtubule [GO:0005874]; nucleus [GO:0005634]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cytokinesis [GO:0000910]; microtubule cytoskeleton organization [GO:0000226],microtubule [GO:0005874]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plastid [GO:0009536]; preprophase band [GO:0009574]; microtubule binding [GO:0008017]; cytokinesis [GO:0000910]; microtubule cytoskeleton organization [GO:0000226] locus:2006737;,locus:2059713; AT1G14690,AT2G01910 65-kDa microtubule-associated protein Microtubule associated protein family protein, putative, expressed (Os03g0237600 protein) (cDNA clone:J013000P23, full insert sequence),Os09g0450300 protein,Os03g0237600 protein (Fragment) Q10PE0,Q0J1C5,A0A0P0XMZ5,A0A0P0VVE2 Q10PE0_ORYSJ,Q0J1C5_ORYSJ,A0A0P0XMZ5_ORYSJ,A0A0P0VVE2_ORYSJ Os03g0237600 LOC_Os03g13460 Os03g0237600 OSNPB_030237600,Os09g0450300 OSNPB_090450300,Os03g0237600 OSNPB_030237600 ENOG411DV5Q GONST3 Q9S845 GONS3_ARATH GDP-mannose transporter GONST3 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 3) FUNCTION: GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen. {ECO:0000269|PubMed:15480787}. 41740 GDP-mannose transporter GONST3 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 3) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; carbohydrate transport [GO:0008643]; nucleotide-sugar transport [GO:0015780] TISSUE SPECIFICITY: Expressed in rosette leaves, stems, flowers and siliques. {ECO:0000269|PubMed:15480787}. locus:2014634; AT1G76340 GDP-mannose transporter Integral membrane family protein, putative, expressed (Os03g0215000 protein),Os02g0154600 protein (cDNA clone:J033089D19, full insert sequence),Os03g0215000 protein (Fragment),Os02g0154600 protein (Fragment) Q10Q03,A3A395,A0A0P0VUL9,A0A0P0VF13 Q10Q03_ORYSJ,A3A395_ORYSJ,A0A0P0VUL9_ORYSJ,A0A0P0VF13_ORYSJ Os03g0215000 LOC_Os03g11590 OsJ_09911 OSNPB_030215000,Os02g0154600 Os02g0154600 OsJ_05421 OSNPB_020154600,Os03g0215000 OSNPB_030215000,Os02g0154600 OSNPB_020154600 ENOG411DV5P Q6NLH7 Q6NLH7_ARATH At5g19300 (Methyltransferase C9orf114 protein) (Uncharacterized protein At5g19300) 44880 At5g19300 (Methyltransferase C9orf114 protein) (Uncharacterized protein At5g19300) methyltransferase activity [GO:0008168] locus:2150255; AT5G19300 Pfam:DUF171 Os04g0244500 protein (cDNA clone:J013047P15, full insert sequence) Q0JEM0 Q0JEM0_ORYSJ Os04g0244500 Os04g0244500 OSNPB_040244500 ENOG411DV5S ALP1 Q94K49 ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 (EC 3.1.-.-) DISRUPTION PHENOTYPE: Suppression of PcG defects in several PRC1 and PRC2 components including lhp1 (in alp1-2 and alp1-3 mutants) and clf (in alp1-3 and alp1-4 mutants) phenotypes (PubMed:26642436, PubMed:22837357). In alp1-4, weak downward curling and slightly late flowering in short days. Increases synergistically ult1 and ult2 floral organ defects in double mutants alp1-3 ult1 and alp1-3 ult2. The double mutant alp1-3 efs has a stronger dwarf, branched phenotype than efs single mutant (PubMed:26642436). {ECO:0000269|PubMed:22837357, ECO:0000269|PubMed:26642436}. FUNCTION: Transposase-derived protein that may have nuclease activity (Probable). Antagonist of polycomb-group (PcG) protein-mediated chromatin silencing, probably by preventing the association of POLYCOMB REPRESSIVE COMPLEX 2 (PRC2) with its accessory components. Needed for full reactivation of several floral homeotic genes that are repressed by PcG (PubMed:26642436). {ECO:0000269|PubMed:26642436, ECO:0000305}. 3.1.-.- 44972 Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 (EC 3.1.-.-) ESC/E(Z) complex [GO:0035098]; nucleus [GO:0005634]; PRC1 complex [GO:0035102]; chromatin binding [GO:0003682]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; negative regulation of chromatin silencing [GO:0031936]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, inflorescence stems, seedlings, leaves, flower buds, inflorescences, and siliques. {ECO:0000269|PubMed:26642436}. locus:2077259; AT3G63270 Plant transposon protein Os07g0175100 protein (Fragment) Q0D898 Q0D898_ORYSJ Os07g0175100 Os07g0175100 OSNPB_070175100 ENOG411DV5R MKK3 O80396,A0A1P8BGD1,A0A1P8BGC3 M2K3_ARATH,A0A1P8BGD1_ARATH,A0A1P8BGC3_ARATH Mitogen-activated protein kinase kinase 3 (AtMKK3) (MAP kinase kinase 3) (EC 2.7.12.2),Mitogen-activated protein kinase kinase 3 DISRUPTION PHENOTYPE: More sensitive to Pseudomonas syringae pv. tomato DC3000 infection. Hypersensitivity to abscisic acid (ABA) in germination and root elongation (PubMed:25720833). {ECO:0000269|PubMed:17933903, ECO:0000269|PubMed:25720833}. FUNCTION: MKK3-MPK6 module plays an important role in the jasmonate signal transduction pathway through the negative regulation of MYC2/JIN1 expression. Activates by phosphorylation the downstream MPK6, MPK7 and MPK8. MKK3-MPK7 module acts as a positive regulator of PR1 gene expression. MKK3-MPK8 module negatively regulates ROS accumulation through controlling expression of the RBOHD gene. Component of the abscisic acid (ABA) signaling pathway that may act as ABA signal transducer in the context of abiotic stresses. Activator of the C group MAP kinases. Activates MPK7 in response to ABA (PubMed:25720833). {ECO:0000269|PubMed:17369371, ECO:0000269|PubMed:17933903, ECO:0000269|PubMed:21419340, ECO:0000269|PubMed:25720833}. 2.7.12.2 57529,55674,48602 Mitogen-activated protein kinase kinase 3 (AtMKK3) (MAP kinase kinase 3) (EC 2.7.12.2),Mitogen-activated protein kinase kinase 3 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; MAP kinase kinase activity [GO:0004708]; abscisic acid-activated signaling pathway [GO:0009738]; defense response, incompatible interaction [GO:0009814]; induced systemic resistance, ethylene mediated signaling pathway [GO:0009866]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; regulation of mitotic cell cycle [GO:0007346]; response to abscisic acid [GO:0009737]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10048483, ECO:0000269|PubMed:21419340}. locus:2170578; AT5G40440 mitogen-activated protein kinase kinase Os06g0473200 protein,Os06g0473200 protein (Fragment) C7J4B4,A0A0P0WWL4 C7J4B4_ORYSJ,A0A0P0WWL4_ORYSJ Os06g0473200 Os06g0473200 OSNPB_060473200,Os06g0473200 OSNPB_060473200 ENOG411DV5U ALEU,ALP Q8H166,Q8RWQ9,F4JYX9,F4J5J9,A8MQZ1 ALEU_ARATH,ALEUL_ARATH,F4JYX9_ARATH,F4J5J9_ARATH,A8MQZ1_ARATH Thiol protease aleurain (AtALEU) (EC 3.4.22.16) (Senescence-associated gene product 2),Thiol protease aleurain-like (EC 3.4.22.16),Aleurain-like protease,Cysteine proteinases superfamily protein FUNCTION: May play a role in proteolysis leading to mobilization of nitrogen during senescence and starvation. R-ATH-6798695; 3.4.22.16 38959,39542,38902,39485,39584 Thiol protease aleurain (AtALEU) (EC 3.4.22.16) (Senescence-associated gene product 2),Thiol protease aleurain-like (EC 3.4.22.16),Aleurain-like protease,Cysteine proteinases superfamily protein extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; immune response [GO:0006955]; proteolysis involved in cellular protein catabolic process [GO:0051603],cysteine-type peptidase activity [GO:0008234],vacuole [GO:0005773]; cysteine-type peptidase activity [GO:0008234]; aging [GO:0007568] TISSUE SPECIFICITY: Expressed in leaves (at protein level). {ECO:0000269|PubMed:8518555, ECO:0000269|PubMed:9225474}. locus:2078312;,locus:2175088; AT5G60360,AT3G45310 Thiol protease Oryzain gamma chain (EC 3.4.22.-),Os09g0442300 protein (Fragment) P25778,A0A0P0XNI7 ORYC_ORYSJ,A0A0P0XNI7_ORYSJ Os09g0442300 LOC_Os09g27030 P0046G12.22,Os09g0442300 OSNPB_090442300 ENOG411DV5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Lectin protein kinase, putative, expressed (Os10g0442000 protein) (cDNA clone:J023089J23, full insert sequence) Q337T2 Q337T2_ORYSJ LOC_Os10g30540 Os10g0442000 OSNPB_100442000 ENOG411DV5W UGT80B1 Q9XIG1,A0A1P8AP89 U80B1_ARATH,A0A1P8AP89_ARATH Sterol 3-beta-glucosyltransferase UGT80B1 (EC 2.4.1.173) (Protein TRANSPARENT TESTA 15) (UDP-glucose:sterol glucosyltransferase 80B1),UDP-Glycosyltransferase superfamily protein DISRUPTION PHENOTYPE: Reduced growth rates. Altered embryonic development, seed suberin accumulation, cutin formation in the seed coat and reduced seed size. Lack of flavanoid accumulation in the seed coat (transparent testa phenotype). {ECO:0000269|PubMed:19641030}. Pale seed coat; Small seeds-C. Somerville-2009 FUNCTION: Involved in the biosynthesis of sterol glucosides. Catalyzes the synthesis of steryl glycosides (SGs) and acyl steryl glycosides (ASGs) which are the most abundant sterol derivatives in higher plants. Can act on several sterols like sitosterol, campesterol and stigmasterol. Is required for embryonic development, seed suberin accumulation, cutin formation and flavanoid accumulation in the seed coat. Both UGT80A2 and UGT80B1 are required for the normal production of SGs and ASGs in seeds. {ECO:0000269|PubMed:19641030, ECO:0000269|PubMed:21830156}. 2.4.1.173 68345,49451 Sterol 3-beta-glucosyltransferase UGT80B1 (EC 2.4.1.173) (Protein TRANSPARENT TESTA 15) (UDP-glucose:sterol glucosyltransferase 80B1),UDP-Glycosyltransferase superfamily protein vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; brassicasterol glucosyltransferase activity [GO:0102203]; cholesterol allpha-glucosyltransferase activity [GO:0102205]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; soladodine glucosyltransferase activity [GO:0102202]; sterol 3-beta-glucosyltransferase activity [GO:0016906]; carbohydrate metabolic process [GO:0005975]; flavonoid biosynthetic process [GO:0009813]; lipid glycosylation [GO:0030259]; seed coat development [GO:0010214]; seed germination [GO:0009845]; sterol biosynthetic process [GO:0016126]; sterol metabolic process [GO:0016125],transferase activity, transferring hexosyl groups [GO:0016758]; carbohydrate metabolic process [GO:0005975]; lipid glycosylation [GO:0030259] TISSUE SPECIFICITY: Expressed in developing seeds, seedlings, leaves and around the apical tip of cotyledons. In embryo, expressed in the seed coat and cotyledons. {ECO:0000269|PubMed:19641030}. locus:2194676; AT1G43620 Glycosyltransferase family 28 N-terminal domain Os01g0867600 protein (Putative UDP-glucose:sterol glucosyltransferase) Q5N968 Q5N968_ORYSJ Os01g0867600 Os01g0867600 OSNPB_010867600 P0677H08.6 ENOG411DV5V F5K20_250 Q9M332 Q9M332_ARATH AT3g53950/F5K20_250 (Glyoxal oxidase-related protein) (Uncharacterized protein At3g53950/F5K20_250) (Uncharacterized protein F5K20_250) 60004 AT3g53950/F5K20_250 (Glyoxal oxidase-related protein) (Uncharacterized protein At3g53950/F5K20_250) (Uncharacterized protein F5K20_250) integral component of membrane [GO:0016021] locus:2084480; AT3G53950 Domain of unknown function (DUF1929) NA NA NA NA NA NA NA ENOG411DV5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os03g0584400 protein (Fragment) Q0DQK8 Q0DQK8_ORYSJ Os03g0584400 OSNPB_030584400 ENOG411DV5X PCMP-H44 Q9SI53 PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial 71699 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2056794; AT2G03880 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DV5Z ENT2 Q9SR64 ENT2_ARATH Equilibrative nucleotide transporter 2 (AtENT2) (Nucleoside transporter ENT2) FUNCTION: May be involved in nucleoside transport. {ECO:0000250}. 45676 Equilibrative nucleotide transporter 2 (AtENT2) (Nucleoside transporter ENT2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nucleoside transmembrane transporter activity [GO:0005337] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:12810710}. locus:2100068; AT3G09990 equilibrative nucleoside transporter Os07g0557100 protein (Putative equilibrative nucleoside transporter ENT8 splice variant) (cDNA clone:001-016-H11, full insert sequence) (cDNA clone:J033081M13, full insert sequence) Q69S29 Q69S29_ORYSJ Os07g0557100 Os07g0557100 OSJNBa0058I18.40 OSNPB_070557100 ENOG411DPU9 EMB1417 Q8LG95 PP332_ARATH Pentatricopeptide repeat-containing protein At4g21190 (Protein EMBRYO DEFECTIVE 1417) Embryo defective; Globular-D. Meinke-2002 35481 Pentatricopeptide repeat-containing protein At4g21190 (Protein EMBRYO DEFECTIVE 1417) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2127388; AT4G21190 Pentatricopeptide repeat-containing protein Os01g0757700 protein (cDNA clone:J033106B06, full insert sequence) Q0JJ68 Q0JJ68_ORYSJ Os01g0757700 Os01g0757700 OSNPB_010757700 ENOG411DPU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q69UA2 Q69UA2_ORYSJ P0666G10.108 Os08g0539100 OSNPB_080539100 ENOG411DPU3 Q94JM0,Q9FJZ7,A0A1P8BA73 Q94JM0_ARATH,Q9FJZ7_ARATH,A0A1P8BA73_ARATH AT5g66420/K1F13_7 (TIM-barrel signal transduction protein),AT5G66420 protein (TIM-barrel signal transduction protein),TIM-barrel signal transduction protein 70033,80719,66280 AT5g66420/K1F13_7 (TIM-barrel signal transduction protein),AT5G66420 protein (TIM-barrel signal transduction protein),TIM-barrel signal transduction protein catalytic activity [GO:0003824] locus:2154960; AT5G66420 TIM-barrel signal transduction protein Os06g0472400 protein (Putative transcriptional regulator),Os06g0472400 protein (Fragment) Q69XZ5,A0A0P0WWK3 Q69XZ5_ORYSJ,A0A0P0WWK3_ORYSJ Os06g0472400 OsJ_21334 OSNPB_060472400 P0633D04.3,Os06g0472400 OSNPB_060472400 ENOG411DPU2 PBL8 Q8GXZ3 PBL8_ARATH Probable serine/threonine-protein kinase PBL8 (EC 2.7.11.1) (PBS1-like protein 8) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 45618 Probable serine/threonine-protein kinase PBL8 (EC 2.7.11.1) (PBS1-like protein 8) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2150019; AT5G01020 serine threonine-protein kinase Os11g0121500 protein,Os11g0121400 protein (Serine/threonine-protein kinase NAK, putative, expressed) (cDNA clone:J033088N21, full insert sequence),Os12g0121100 protein (Fragment),Os11g0122150 protein Q0IV07,Q2RB87,A0A0N7KTH7,A0A0P0XY56 Q0IV07_ORYSJ,Q2RB87_ORYSJ,A0A0N7KTH7_ORYSJ,A0A0P0XY56_ORYSJ Os11g0121500 OSNPB_110121500,Os11g0121400 LOC_Os11g02830 Os11g0121400 OsJ_32754 OSNPB_110121400,Os12g0121100 OSNPB_120121100,Os11g0122150 OSNPB_110122150 ENOG411DPU1 SDI1 Q8L730,Q8GXU5,F4KBC0,F4KBB9 SDI2_ARATH,SDI1_ARATH,F4KBC0_ARATH,F4KBB9_ARATH Protein SULFUR DEFICIENCY-INDUCED 2,Protein SULFUR DEFICIENCY-INDUCED 1 (AtSDI1),Uncharacterized protein DISRUPTION PHENOTYPE: Maintain higher tissue sulfate concentrations under sulfur-limiting conditions. {ECO:0000269|PubMed:19154231}. Elevated sulfate levels in roots under sulfate starvation-M. Hawkesford-2009 FUNCTION: Involved in the utilization of stored sulfate under sulfur-deficient conditions. {ECO:0000250|UniProtKB:Q8GXU5}.,FUNCTION: Involved in the utilization of stored sulfate under sulfur-deficient conditions. {ECO:0000269|PubMed:19154231}. 34660,35257,22867,26708 Protein SULFUR DEFICIENCY-INDUCED 2,Protein SULFUR DEFICIENCY-INDUCED 1 (AtSDI1),Uncharacterized protein nucleus [GO:0005634]; cellular response to sulfur starvation [GO:0010438]; chloroplast organization [GO:0009658]; regulation of glucosinolate biosynthetic process [GO:0010439],nuclear transcriptional repressor complex [GO:0090568]; cellular response to sulfur starvation [GO:0010438]; regulation of sulfur utilization [GO:0006792] locus:2010612;,locus:2156574;,locus:4515103601; AT1G04770,AT5G48850,AT5G22794 male sterility MS5 family protein Os05g0506000 protein (cDNA clone:001-043-E07, full insert sequence) (cDNA clone:J013002B13, full insert sequence) Q65X56 Q65X56_ORYSJ Os05g0506000 Os05g0506000 OJ1123_F01.11 OSNPB_050506000 ENOG411DPU0 Q9LSA9,A0A1I9LRT3 Q9LSA9_ARATH,A0A1I9LRT3_ARATH Amino acid kinase family protein (Putative uridylate kinase),Amino acid kinase family protein Seedling lethal without exogenous sucrose; Slow growth; Pale green leaves-R. Oelmuller-2009 ARA:AT3G18680-MONOMER; 36263,40003 Amino acid kinase family protein (Putative uridylate kinase),Amino acid kinase family protein chloroplast [GO:0009507]; UMP kinase activity [GO:0033862]; pyrimidine nucleotide biosynthetic process [GO:0006221],cytoplasm [GO:0005737]; UMP kinase activity [GO:0033862]; pyrimidine nucleotide biosynthetic process [GO:0006221] locus:2093949; AT3G18680 Uridylate Os01g0965400 protein (Putative UMP-kinase) (cDNA clone:001-039-E08, full insert sequence) (cDNA clone:J023027E20, full insert sequence) Q5JJV9 Q5JJV9_ORYSJ Os01g0965400 Os01g0965400 OsJ_04876 OSNPB_010965400 P0458E05.17 ENOG411DPU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MAC/Perforin domain Os02g0475300 protein,Os02g0475300 protein (Fragment) Q6K740,Q6K741,A0A0P0VIY9 Q6K740_ORYSJ,Q6K741_ORYSJ,A0A0P0VIY9_ORYSJ P0419C03.10-2 Os02g0475300 OSNPB_020475300,P0419C03.10-1 Os02g0475300 OSNPB_020475300,Os02g0475300 OSNPB_020475300 ENOG411DPU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:3_5_exonuc NA NA NA NA NA NA NA ENOG411DPU5 CYP86A2,CYP86A4,CYP86A8,CYP86A7 O23066,Q9LMM1,O80823,Q9CAD6 C86A2_ARATH,C86A4_ARATH,C86A8_ARATH,C86A7_ARATH Cytochrome P450 86A2 (EC 1.14.14.1) (Protein ABERRANT INDUCTION OF TYPE THREE 1),Cytochrome P450 86A4 (EC 1.14.14.1),Cytochrome P450 86A8 (EC 1.14.14.1) (Protein LACERATA),Cytochrome P450 86A7 (EC 1.14.14.1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced content of cutin, loose cuticle membrane ultrastructure, show increased permeability to water vapor and display enhanced disease severity to a virulent strain of the bacterial pathogen P.syringae. {ECO:0000269|PubMed:15241470}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced content of the flower polyesters 16-hydroxypalmitate, 10,16-dihydroxypalmitate and 1,16-hexadecanedioate. {ECO:0000269|PubMed:19959665}.,DISRUPTION PHENOTYPE: Organ fusion between rosette leaves and in inflorescences. {ECO:0000269|PubMed:11493698}. Abnormalities in cell morphology in lcr-3P77: These were very often observed as bulges consisting of several cells and as abnormally large roundish cells. The development of trichomes was also found to be affected in a way that suggested that cell differentiation was retarded in lcr-3P77 compared with wild-type plants.,Detached leaves of lcr were apparently able to obtain the required water and mineral nutrients through the sutures with contacting leaves suggesting that the lipid boundary at the exterior epidermal cell walls in lcr-3P77 mutants becomes permeable or may even disappear upon fusion.,Fusions between rosette leaves and in inflorescences.,Mutant plants generally produced fertile flowers and displayed relatively weak fusions in inflorescences.,Mutant plants reached a lower height and had an increased number of shoots relative to wild type implying that apical dominance was reduced; delayed senescence irregular leaf shapes and lower fertility compared with wild-type plants were also noted.,Some 3P77 plants exhibited extremely strong fusions resulting in tearing of leaf tissues during their growth. Occasionally petioles of some fused leaves have been forced to tear; however the detached leaves did not senesce and remained green for several days.,Some lcr leaves displayed regions that virtually lacked all trichomes.,Similar phenotype to that of lcr-3P77. Fused leaves-A. Yephremov-2001 FUNCTION: Catalyzes the omega-hydroxylation of various fatty acids (FA). Acts on saturated and unsaturated fatty acids with chain lengths from C12 to C18. Plays a major role in the biosynthesis of extracellular lipids. Involved in the biosynthesis of hydroxylated fatty acids required for cutin biosynthesis, cuticle development and repression of bacterial type III gene expression. {ECO:0000269|PubMed:15241470, ECO:0000269|PubMed:15709153, ECO:0000269|PubMed:17427946}.,FUNCTION: Catalyzes the omega-hydroxylation of various fatty acids (FA). Acts on saturated and unsaturated fatty acids with chain lengths from C12 to C18. Involved in the biosynthesis of 16-hydroxypalmitate. {ECO:0000269|PubMed:15709153, ECO:0000269|PubMed:17427946, ECO:0000269|PubMed:19959665}.,FUNCTION: Catalyzes the omega-hydroxylation of various fatty acids (FA). Acts on saturated and unsaturated fatty acids with chain lengths from C12 to C18. May be involved in the biosynthesis of cutin in the epidermis which prevents post-genital organ fusions. Hydroxylated FAs may be important for trichome differentiation, establishment of apical dominance and senescence. {ECO:0000269|PubMed:11493698, ECO:0000269|PubMed:15709153, ECO:0000269|PubMed:17427946}.,FUNCTION: Catalyzes the omega-hydroxylation of various fatty acids (FA). Acts on saturated and unsaturated fatty acids with chain lengths from C12 to C18. {ECO:0000269|PubMed:15709153, ECO:0000269|PubMed:17427946}. MetaCyc:AT2G45970-MONOMER;,ARA:AT1G63710-MONOMER; 1.14.14.1 62530,62603,60916,60352 Cytochrome P450 86A2 (EC 1.14.14.1) (Protein ABERRANT INDUCTION OF TYPE THREE 1),Cytochrome P450 86A4 (EC 1.14.14.1),Cytochrome P450 86A8 (EC 1.14.14.1) (Protein LACERATA),Cytochrome P450 86A7 (EC 1.14.14.1) integral component of membrane [GO:0016021]; alkane 1-monooxygenase activity [GO:0018685]; aromatase activity [GO:0070330]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; defense response [GO:0006952]; fatty acid metabolic process [GO:0006631],integral component of membrane [GO:0016021]; alkane 1-monooxygenase activity [GO:0018685]; aromatase activity [GO:0070330]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; fatty acid metabolic process [GO:0006631] DEVELOPMENTAL STAGE: Expressed in the seed coat inner integument layer facing the endosperm in the stages from globular to torpedo embryo. {ECO:0000269|PubMed:18179651}. TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. Expressed at low levels in roots. Expressed in guard cells of cotyledons and leaves. {ECO:0000269|PubMed:15709153, ECO:0000269|PubMed:19704826}.,TISSUE SPECIFICITY: Expressed in stems, flowers and siliques. {ECO:0000269|PubMed:15709153}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. Expressed at low levels in roots. {ECO:0000269|PubMed:15709153}. locus:2126051;,locus:2025371;,locus:2050787;,locus:2026659; AT4G00360,AT1G01600,AT2G45970,AT1G63710 cytochrome P450 OSJNBa0084K11.4 protein (Os04g0560100 protein) (cDNA clone:001-205-H12, full insert sequence),Os02g0666500 protein (Putative cytochrome P450) (cDNA clone:J023003E06, full insert sequence) Q7XSQ8,Q6ESH0 Q7XSQ8_ORYSJ,Q6ESH0_ORYSJ Os04g0560100 OSJNBa0084K11.4 OSNPB_040560100,Os02g0666500 Os02g0666500 OJ1486_E07.14 OsJ_07852 OSNPB_020666500 P0461B08.29 ENOG411DPU4 Q9CAA0,F4HQE7 COB21_ARATH,F4HQE7_ARATH Coatomer subunit beta'-1 (Beta'-coat protein 1) (Beta'-COP 1),Coatomer subunit beta' FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.,FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. {ECO:0000256|PIRNR:PIRNR005567}. R-ATH-6807878;R-ATH-6811434; 103969,103009 Coatomer subunit beta'-1 (Beta'-coat protein 1) (Beta'-COP 1),Coatomer subunit beta' COPI vesicle coat [GO:0030126]; Golgi membrane [GO:0000139]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],COPI-coated vesicle membrane [GO:0030663]; Golgi membrane [GO:0000139]; membrane coat [GO:0030117]; structural molecule activity [GO:0005198]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] AT1G79990 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles which further mediate biosynthetic protein transport from the ER via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) Coatomer subunit beta'-1 (Beta'-coat protein 1) (Beta'-COP 1) Q5VQ78 COB21_ORYSJ Os06g0143900 LOC_Os06g05180 OSJNBa0007O20.8-1 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. ENOG411DPUZ PEPKR2 Q8W490 PEPK2_ARATH Serine/threonine-protein kinase PEPKR2 (EC 2.7.11.-) (Protein PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2) R-ATH-445355;R-ATH-5627123; 2.7.11.- 52059 Serine/threonine-protein kinase PEPKR2 (EC 2.7.11.-) (Protein PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2195037; AT1G12680 serine threonine-protein kinase Os09g0466900 protein (Putative calcium-dependent protein kinase),Os09g0466900 protein (Putative calcium-dependent protein kinase) (cDNA clone:J033129G18, full insert sequence) Q6YXH0,Q6YXH1 Q6YXH0_ORYSJ,Q6YXH1_ORYSJ OJ1005_D12.36-2 Os09g0466900 OSNPB_090466900,OJ1005_D12.36-1 Os09g0466900 OSNPB_090466900 ENOG411DPUY ROPGAP5,ROPGAP1,ROPGAP2 Q6NKT5,Q9FMR1,F4JI46 RGAP5_ARATH,RGAP1_ARATH,RGAP2_ARATH Rho GTPase-activating protein 5 (Rho-type GTPase-activating protein 5),Rho GTPase-activating protein 1 (Rho-type GTPase-activating protein 1),Rho GTPase-activating protein 2 (Rho-type GTPase-activating protein 2) FUNCTION: Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. {ECO:0000250}. 36830,51991,47299 Rho GTPase-activating protein 5 (Rho-type GTPase-activating protein 5),Rho GTPase-activating protein 1 (Rho-type GTPase-activating protein 1),Rho GTPase-activating protein 2 (Rho-type GTPase-activating protein 2) plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; signal transduction [GO:0007165],GTPase activator activity [GO:0005096]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed in differentiating xylem cells. {ECO:0000269|PubMed:22984069}. locus:2199948;,locus:2176392;,locus:2139330; AT1G08340,AT5G22400,AT4G03100 rac GTPase activating protein Os11g0153400 protein (Rac GTPase activating protein 1) (Rac GTPase activating protein 1, putative, expressed),Os07g0408500 protein (Rac GTPase activating protein 3-like protein) (cDNA clone:J033133E02, full insert sequence),Os12g0533400 protein (Rho GTPase activating protein 1) (Fragment),Os12g0155200 protein Q53LV1,Q7XAL7,Q6UQ73,A0A0P0Y741 Q53LV1_ORYSJ,Q7XAL7_ORYSJ,Q6UQ73_ORYSJ,A0A0P0Y741_ORYSJ Os11g0153400 LOC_Os11g05540 Os11g0153400 OsJ_32999 OSNPB_110153400,P0492E07.106 Os07g0408500 OsJ_23926 OSNPB_070408500,Os12g0533400 Os12g0533400 OSNPB_120533400,Os12g0155200 OSNPB_120155200 ENOG411DPUX MFH8.9,MFB16.1 Q6NMG4,Q9LUF9,Q9FG44,Q9FGM2,Q9SLA7,A0A1P8BDU8,F4K8L8,F4K7J1,F4K8L9 Q6NMG4_ARATH,Q9LUF9_ARATH,Q9FG44_ARATH,Q9FGM2_ARATH,Q9SLA7_ARATH,A0A1P8BDU8_ARATH,F4K8L8_ARATH,F4K7J1_ARATH,F4K8L9_ARATH At5g53150 (DnaJ heat shock amino-terminal domain protein),Molecular chaperone Hsp40/DnaJ family protein,At5g37440 (Chaperone DnaJ-domain superfamily protein) (Similarity to DnaJ protein),DnaJ heat shock amino-terminal domain protein (DnaJ protein-like),At2g25560/F13B15.22 (DNAJ heat shock N-terminal domain-containing protein) (Putative DnaJ protein),DnaJ heat shock amino-terminal domain protein,Chaperone DnaJ-domain superfamily protein 82210,25634,32549,85237,73097,61993,27704,55161,23839 At5g53150 (DnaJ heat shock amino-terminal domain protein),Molecular chaperone Hsp40/DnaJ family protein,At5g37440 (Chaperone DnaJ-domain superfamily protein) (Similarity to DnaJ protein),DnaJ heat shock amino-terminal domain protein (DnaJ protein-like),At2g25560/F13B15.22 (DNAJ heat shock N-terminal domain-containing protein) (Putative DnaJ protein),DnaJ heat shock amino-terminal domain protein,Chaperone DnaJ-domain superfamily protein locus:2163786;,locus:2159742;locus:2832380;,locus:2182508;,locus:2040110;,locus:2151714;,locus:504954888;,locus:2151729; AT5G53150,AT5G50510AT5G50620;,AT5G37440,AT2G25560,AT5G37750,AT5G50115,AT5G37760 dnaJ domain containing protein expressed Heat shock protein-like (Os02g0510000 protein),DnaJ domain containing protein, expressed (Os03g0401200 protein) (Putative heat shock protein),Os04g0388800 protein (Fragment) Q6K2F0,Q94H83,Q0JDP0 Q6K2F0_ORYSJ,Q94H83_ORYSJ,Q0JDP0_ORYSJ Os02g0510000 Os02g0510000 OsJ_06868 OSJNBa0052M16.36 OSNPB_020510000,LOC_Os03g28310 Os03g0401200 Os03g28310 OsJ_11180 OSNPB_030401200,Os04g0388800 Os04g0388800 OSNPB_040388800 ENOG411DPUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K00227 lathosterol oxidase EC 1.14.21.6 Os01g0134500 protein (Putative sterol-C5(6)-desaturase) (cDNA clone:J033069O22, full insert sequence) Q5ZCK9 Q5ZCK9_ORYSJ Os01g0134500 OsJ_00268 OSJNBa0083M16.29 OSNPB_010134500 ENOG411DPUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0034I13.2 protein (Os04g0636200 protein) (cDNA clone:J033087K04, full insert sequence) Q0J9Q8 Q0J9Q8_ORYSJ Os04g0636200 Os04g0636200 OsJ_16321 OSJNBb0034I13.2 OSNPB_040636200 ENOG411DPUQ DGK6,DGK5 F4JKI3,Q9C5E5 DGK6_ARATH,DGK5_ARATH Diacylglycerol kinase 6 (AtDGK6) (DAG kinase 6) (EC 2.7.1.107) (Diglyceride kinase 6) (DGK 6),Diacylglycerol kinase 5 (AtDGK5) (DAG kinase 5) (EC 2.7.1.107) (Diglyceride kinase 5) (DGK 5) FUNCTION: Phosphorylates the second messenger diacylglycerol (DAG) to generate phosphatidic acid (PA), another important signaling molecule. PA is required for plant development and responses to abiotic stress and pathogen attack. May be involved in the accumulation of PA during cold stress. {ECO:0000269|PubMed:23346092}.,FUNCTION: Phosphorylates the second messenger diacylglycerol (DAG) to generate phosphatidic acid (PA), another important signaling molecule. PA is required for plant development and responses to abiotic stress and pathogen attack. May be involved in the accumulation of PA during cold stress (By similarity). {ECO:0000250}. ARA:AT2G20900-MONOMER; R-ATH-114508; 2.7.1.107 52490,57377 Diacylglycerol kinase 6 (AtDGK6) (DAG kinase 6) (EC 2.7.1.107) (Diglyceride kinase 6) (DGK 6),Diacylglycerol kinase 5 (AtDGK5) (DAG kinase 5) (EC 2.7.1.107) (Diglyceride kinase 5) (DGK 5) chloroplast [GO:0009507]; ATP binding [GO:0005524]; diacylglycerol kinase activity [GO:0004143]; NAD+ kinase activity [GO:0003951]; defense response [GO:0006952]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205],ATP binding [GO:0005524]; diacylglycerol kinase activity [GO:0004143]; NAD+ kinase activity [GO:0003951]; defense response [GO:0006952]; protein kinase C-activating G-protein coupled receptor signaling pathway [GO:0007205] locus:2123703;,locus:2051343; AT4G28130,AT2G20900 Diacylglycerol kinase Diacylglycerol kinase (DAG kinase) (EC 2.7.1.107) Q7XQT2,Q0J7M1 Q7XQT2_ORYSJ,Q0J7M1_ORYSJ Os04g0634700 OSJNBa0043L09.15 OSNPB_040634700,Os08g0178700 Os08g0178700 OSNPB_080178700 ENOG411DPUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os09g0456200 protein (Putative bZIP transcription factor ABI5) (cDNA clone:J013049N23, full insert sequence) Q67TQ5 Q67TQ5_ORYSJ Os09g0456200 B1342C04.26 OSNPB_090456200 P0025H07.45 ENOG411DPUW GLN1-2,GLN1-4,GLN1-1,GLN1-3,GSR2,GLN1:4 Q8LCE1,Q9FMD9,Q56WN1,Q9LVI8,F4ID91,A0A1P8BF22 GLN12_ARATH,GLN14_ARATH,GLN11_ARATH,GLN13_ARATH,F4ID91_ARATH,A0A1P8BF22_ARATH Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;2) (GLN1;2),Glutamine synthetase cytosolic isozyme 1-4 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;4) (GLN1;4),Glutamine synthetase cytosolic isozyme 1-1 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;1) (GLN1;1),Glutamine synthetase cytosolic isozyme 1-3 (GS1) (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;3) (GLN1;3),Glutamine synthetase (EC 6.3.1.2),Glutamine synthetase 14 Small rosette leaves in response to nitrate-C. Masclaux-Daubresse-2011 FUNCTION: Low-affinity glutamine synthetase. May contribute to the homeostatic control of glutamine synthesis in roots.,FUNCTION: High-affinity glutamine synthetase. May contribute to the homeostatic control of glutamine synthesis in roots. ARA:AT5G16570-MONOMER;MetaCyc:AT5G16570-MONOMER; R-ATH-210455;R-ATH-70614; 6.3.1.2; 6.3.1.2 39207,38987,39115,38595,40390,27226 Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;2) (GLN1;2),Glutamine synthetase cytosolic isozyme 1-4 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;4) (GLN1;4),Glutamine synthetase cytosolic isozyme 1-1 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;1) (GLN1;1),Glutamine synthetase cytosolic isozyme 1-3 (GS1) (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;3) (GLN1;3),Glutamine synthetase (EC 6.3.1.2),Glutamine synthetase 14 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; glutamate-ammonia ligase activity [GO:0004356]; glutamine biosynthetic process [GO:0006542]; nitrogen fixation [GO:0009399],cytosol [GO:0005829]; ATP binding [GO:0005524]; glutamate-ammonia ligase activity [GO:0004356]; glutamine biosynthetic process [GO:0006542]; nitrate assimilation [GO:0042128]; nitrogen fixation [GO:0009399],cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; glutamate-ammonia ligase activity [GO:0004356]; glutamine biosynthetic process [GO:0006542]; leaf senescence [GO:0010150]; nitrate assimilation [GO:0042128]; nitrogen fixation [GO:0009399],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; glutamate-ammonia ligase activity [GO:0004356]; structural constituent of ribosome [GO:0003735]; glutamine biosynthetic process [GO:0006542]; nitrate assimilation [GO:0042128]; response to cadmium ion [GO:0046686]; ribosome assembly [GO:0042255],apoplast [GO:0048046]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; vacuole [GO:0005773]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; glutamate-ammonia ligase activity [GO:0004356]; glutamine biosynthetic process [GO:0006542]; nitrate assimilation [GO:0042128]; response to salt stress [GO:0009651],glutamate-ammonia ligase activity [GO:0004356]; glutamine biosynthetic process [GO:0006542] TISSUE SPECIFICITY: Expressed in the pericycle of all root tissues. {ECO:0000269|PubMed:14757761}.,TISSUE SPECIFICITY: Expressed in the pericycle in the region of lateral root emergence. {ECO:0000269|PubMed:14757761}.,TISSUE SPECIFICITY: Expressed in root tips, root hairs and epidermis. Ubiquitously expressed with higher levels in siliques and roots. {ECO:0000269|PubMed:14757761, ECO:0000269|PubMed:16472779}.,TISSUE SPECIFICITY: Expressed in the pericycle in the region of mature root. {ECO:0000269|PubMed:14757761}. locus:2174175;,locus:2151739;,locus:2088580;,locus:2013880; AT1G66200,AT5G16570,AT5G37600,AT3G17820 glutamine synthetase Glutamine synthetase cytosolic isozyme 1-1 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;1) (OsGLN1;1) (Glutamine synthetase shoot isozyme) (OsGS1;1),Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;2) (OsGLN1;2) (Glutamine synthetase root isozyme) (OsGS1;2) P14656,P14654 GLN11_ORYSJ,GLN12_ORYSJ GLN1-1 RGS28 Os02g0735200 LOC_Os02g50240 OsJ_08295 P0487D09.8,GLN1-2 GSR RGS8 Os03g0223400 LOC_Os03g12290 OJ1743A09.19 OsJ_09974 DISRUPTION PHENOTYPE: Plants show marked reduction in leaf blades elongation, plant height, panicle size and grain filling. {ECO:0000269|PubMed:15918879}. FUNCTION: High-affinity glutamine synthetase. May be a major component of the cytosolic glutamine synthetic pathway in leaf blades. {ECO:0000269|PubMed:15918879}.,FUNCTION: High-affinity glutamine synthetase. May play a role in the primary assimilation of ammonium taken up by roots. ENOG411DPUV CHR23,CHR12 F4K128,F4J9M5 CHR23_ARATH,CHR12_ARATH Probable ATP-dependent DNA helicase CHR23 (EC 3.6.4.12) (Protein CHROMATIN REMODELING 23) (AtCHR23) (Protein MINUSCULE 2),Probable ATP-dependent DNA helicase CHR12 (EC 3.6.4.12) (Protein CHROMATIN REMODELING 12) (AtCHR12) (Protein MINUSCULE 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but double mutant plants chr12 and chr23 are embryonic lethal. {ECO:0000269|PubMed:23062007}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but double mutant plants chr12 and chr23 are embryonic lethal. {ECO:0000269|PubMed:17605754, ECO:0000269|PubMed:23062007}. FUNCTION: Probable chromatin-remodeling factor that is functionally redundant with CHR12 in root and shoot stem cell initiation and root apical meristem (RAM) and shoot apical meristem (SAM) maintenance. Can associate with the promoter region of WOX5 (PubMed:23062007). May promote seed maturation and repress initiation of germination (PubMed:24839909). May repress plant growth (PubMed:24666886). {ECO:0000269|PubMed:23062007, ECO:0000269|PubMed:24666886, ECO:0000269|PubMed:24839909}.,FUNCTION: Probable chromatin-remodeling factor that is functionally redundant with CHR23 in root and shoot stem cell initiation, and root apical meristem (RAM) and shoot apical meristem (SAM) maintenance. Plays an important role in mediating the temporary plant growth arrest induced upon perception of stress (PubMed:17605754, PubMed:23062007). May promote seed maturation and repress initiation of germination (PubMed:24839909). {ECO:0000269|PubMed:17605754, ECO:0000269|PubMed:23062007, ECO:0000269|PubMed:24839909}. R-ATH-1266695;R-ATH-3247509; 3.6.4.12 122887,126735 Probable ATP-dependent DNA helicase CHR23 (EC 3.6.4.12) (Protein CHROMATIN REMODELING 23) (AtCHR23) (Protein MINUSCULE 2),Probable ATP-dependent DNA helicase CHR12 (EC 3.6.4.12) (Protein CHROMATIN REMODELING 12) (AtCHR12) (Protein MINUSCULE 1) nucleus [GO:0005634]; ATP binding [GO:0005524]; chromatin DNA binding [GO:0031490]; helicase activity [GO:0004386]; histone binding [GO:0042393]; covalent chromatin modification [GO:0016569]; maintenance of root meristem identity [GO:0010078]; maintenance of seed dormancy [GO:0010231]; maintenance of shoot apical meristem identity [GO:0010492]; regulation of growth [GO:0040008]; unidimensional cell growth [GO:0009826],nucleus [GO:0005634]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; histone binding [GO:0042393]; covalent chromatin modification [GO:0016569]; maintenance of root meristem identity [GO:0010078]; maintenance of seed dormancy [GO:0010231]; maintenance of shoot apical meristem identity [GO:0010492]; regulation of growth [GO:0040008]; response to heat [GO:0009408]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in embryos, root apical meristem (RAM) and shoot apical meristem (SAM). {ECO:0000269|PubMed:23062007}.,TISSUE SPECIFICITY: Expressed in root endodermis, cotyledons, young buds, developing cauline leaves, rosette and cauline leaf stipules, sepals of young flower buds, stigma and seeds. {ECO:0000269|PubMed:17605754}. locus:2150270;,locus:2083033; AT5G19310,AT3G06010 Class II histone deacetylase complex subunits 2 and 3 NA NA NA NA NA NA NA ENOG411DPUU AIH,EMB1873 Q8GWW7,A0A1P8BAZ8,A0A1P8BB17 AGUA_ARATH,A0A1P8BAZ8_ARATH,A0A1P8BB17_ARATH Agmatine deiminase (EC 3.5.3.12) (Agmatine iminohydrolase) (Protein EMBRYO DEFECTIVE 1873),Porphyromonas-type peptidyl-arginine deiminase family protein Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine. PATHWAY: Amine and polyamine biosynthesis; putrescine biosynthesis via agmatine pathway; N-carbamoylputrescine from agmatine: step 1/1. MetaCyc:MONOMER-2641; 3.5.3.12 43155,33397,42290 Agmatine deiminase (EC 3.5.3.12) (Agmatine iminohydrolase) (Protein EMBRYO DEFECTIVE 1873),Porphyromonas-type peptidyl-arginine deiminase family protein agmatine deiminase activity [GO:0047632]; protein-arginine deiminase activity [GO:0004668]; polyamine biosynthetic process [GO:0006596]; putrescine biosynthetic process from arginine [GO:0033388],agmatine deiminase activity [GO:0047632]; protein-arginine deiminase activity [GO:0004668]; putrescine biosynthetic process [GO:0009446] locus:2181499; AT5G08170 agmatine Os04g0466600 protein (cDNA, clone: J100056P20, full insert sequence) B7FA89 B7FA89_ORYSJ Os04g0466600 OsJ_15109 OSNPB_040466600 ENOG411DPUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Expressed protein (Os03g0187800 protein) Q8H7P2 Q8H7P2_ORYSJ OJ1217B09.4 LOC_Os03g08880 Os03g0187800 OSNPB_030187800 ENOG411DPUK Q9LMR5,Q9M8L2 FK126_ARATH,FBK30_ARATH F-box/kelch-repeat protein At1g15670,F-box/kelch-repeat protein At1g80440 40179,38813 F-box/kelch-repeat protein At1g15670,F-box/kelch-repeat protein At1g80440 cytosol [GO:0005829]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; negative regulation of cytokinin-activated signaling pathway [GO:0080037]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of phenylpropanoid metabolic process [GO:2000762]; regulation of proteolysis [GO:0030162] locus:2036119;,locus:2198958; AT1G15670,AT1G80440 F-box kelch-repeat protein Kelch repeat-containing F-box-like (Os06g0594400 protein) (cDNA clone:J023001I15, full insert sequence),Os01g0797800 protein (Fragment),Os02g0208700 protein Q69UE9,Q0JIJ4,A0A0P0VGE5 Q69UE9_ORYSJ,Q0JIJ4_ORYSJ,A0A0P0VGE5_ORYSJ Os06g0594400 Os06g0594400 OSNPB_060594400 P0502H06.49 P0652A05.14,Os01g0797800 Os01g0797800 OSNPB_010797800,Os02g0208700 OSNPB_020208700 ENOG411DPUI Q9FVR6 Y1222_ARATH Uncharacterized protein At1g32220, chloroplastic 31979 Uncharacterized protein At1g32220, chloroplastic chloroplast [GO:0009507]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; NADH dehydrogenase activity [GO:0003954]; response to oxidative stress [GO:0006979]; ubiquinone-6 biosynthetic process [GO:1901006] locus:2031710; AT1G32220 NAD dependent epimerase/dehydratase family OSJNBb0118P14.7 protein (Os04g0403500 protein) (cDNA clone:J023036D02, full insert sequence) (cDNA clone:J033120N14, full insert sequence) Q7XVF8 Q7XVF8_ORYSJ Os04g0403500 OSJNBb0118P14.7 OSNPB_040403500 ENOG411DPUH NRPC2 F4KD38,A0A1P8BFS9 NRPC2_ARATH,A0A1P8BFS9_ARATH DNA-directed RNA polymerase III subunit 2 (DNA-directed RNA polymerase III subunit RPC2) (DNA polymerase I subunit C2) (EC 2.7.7.6) (Nuclear RNA polymerase C2),Nuclear RNA polymerase C2 DISRUPTION PHENOTYPE: Defect in seed production due to female gametophyte developmental arrest. {ECO:0000269|PubMed:18723889}. Complete female gametophyte defective; Male gametophyte defective-C. Pikaard-2008 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and NRPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. {ECO:0000250|UniProtKB:P22276}.; FUNCTION: Essential for the completion of the three rounds of mitosis in female megaspores required for the development of mature gametophytes (PubMed:18723889). {ECO:0000269|PubMed:18723889}. R-ATH-1834949; 2.7.7.6 130212,93774 DNA-directed RNA polymerase III subunit 2 (DNA-directed RNA polymerase III subunit RPC2) (DNA polymerase I subunit C2) (EC 2.7.7.6) (Nuclear RNA polymerase C2),Nuclear RNA polymerase C2 DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; ribonucleoside binding [GO:0032549]; megagametogenesis [GO:0009561]; transcription from RNA polymerase III promoter [GO:0006383],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; ribonucleoside binding [GO:0032549]; transcription, DNA-templated [GO:0006351] locus:2153323; AT5G45140 DNA-directed RNA Polymerase DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) Q10JZ3 Q10JZ3_ORYSJ Os03g0403100 LOC_Os03g28960 Os03g0403100 OSNPB_030403100 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU363031}. ENOG411DPUM UGT75D1,UGT75C1 O23406,Q0WW21 U75D1_ARATH,U75C1_ARATH UDP-glycosyltransferase 75D1 (EC 2.4.1.-),UDP-glycosyltransferase 75C1 (EC 2.4.1.-) (Anthocyanin 5-O-glucosyltransferase) (UDP glucose:anthocyanin 5-O-glucosyltransferase) FUNCTION: Glucosyltransferase that glucosylates kaempferol. Can glucosylate the phytotoxic xenobiotic compound 2,4,5-trichlorophenol (TCP). {ECO:0000269|PubMed:12721858}.,FUNCTION: Catalyzes the glycosylation of anthocyanins from UDP-glucose. {ECO:0000269|PubMed:15807784, ECO:0000269|PubMed:20085894}. PATHWAY: Pigment biosynthesis; anthocyanin biosynthesis. ARA:AT4G14090-MONOMER;MetaCyc:MONOMER-18511; 2.4.1.- 53867,50703 UDP-glycosyltransferase 75D1 (EC 2.4.1.-),UDP-glycosyltransferase 75C1 (EC 2.4.1.-) (Anthocyanin 5-O-glucosyltransferase) (UDP glucose:anthocyanin 5-O-glucosyltransferase) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152]; response to toxic substance [GO:0009636],intracellular membrane-bounded organelle [GO:0043231]; anthocyanin 5-O-glucosyltransferase activity [GO:0080018]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; anthocyanin-containing compound biosynthetic process [GO:0009718]; phenylpropanoid metabolic process [GO:0009698] locus:2130359;,locus:2129381; AT4G15550,AT4G14090 UDP-glycosyltransferase 75D1-like Glycosyltransferase (EC 2.4.1.-) Q69UF5,Q53KJ5,Q69XD3,A0A0N7KEW3 Q69UF5_ORYSJ,Q53KJ5_ORYSJ,Q69XD3_ORYSJ,A0A0N7KEW3_ORYSJ Os06g0593800 OSNPB_060593800 P0502H06.40 P0652A05.5,Os11g0446700 LOC_Os11g25990 OsJ_13736 OSNPB_110446700,Os06g0593200 OSNPB_060593200 P0502H06.32,Os02g0203300 OSNPB_020203300 ENOG411DPUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulatory protein BTB/POZ domain and ankyrin repeat-containing protein NPR5 (OsNPR5) A2CIR7 NPR5_ORYSJ NPR5 NH4 Os01g0948900 LOC_Os01g72020 P0466H10.44-1 FUNCTION: Involved in defense response against pathogens. {ECO:0000250|UniProtKB:Q9FDY4}. ENOG411DPUG MYJ24.15 Q9FN44 Q9FN44_ARATH Zinc finger, C3HC4 type (RING finger) family protein 527251 Zinc finger, C3HC4 type (RING finger) family protein plasmodesma [GO:0009506] locus:2178322; AT5G23110 RING Os04g0675300 protein (Fragment),Os04g0675101 protein,Os04g0675200 protein (Fragment) Q0J927,A0A0P0WGA6,A0A0P0WGK9,A0A0P0WGB5 Q0J927_ORYSJ,A0A0P0WGA6_ORYSJ,A0A0P0WGK9_ORYSJ,A0A0P0WGB5_ORYSJ Os04g0675300 Os04g0675300 OSNPB_040675300,Os04g0675101 OSNPB_040675101,Os04g0675200 OSNPB_040675200,Os04g0675300 OSNPB_040675300 ENOG411DPUE Q8H124 Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic 30471 Uncharacterized protein At2g34460, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; intracellular [GO:0005622]; plastoglobule [GO:0010287] locus:2040854; AT2G34460 NmrA-like family Os06g0360300 protein (Putative Tic62 protein) (cDNA clone:001-205-A02, full insert sequence),Os06g0360300 protein (Fragment) Q69SX2,A0A0P0WWK9 Q69SX2_ORYSJ,A0A0P0WWK9_ORYSJ Os06g0360300 OSNPB_060360300 P0640D01.14 P0680B05.37,Os06g0360300 OSNPB_060360300 ENOG411DPUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os05g0197900 protein (Os05g0198000 protein),Os09g0300150 protein,Os04g0647425 protein (Fragment),Os05g0198100 protein C7J2P4,A0A0P0XK74,A0A0P0WFJ4,A0A0P0WJ43 C7J2P4_ORYSJ,A0A0P0XK74_ORYSJ,A0A0P0WFJ4_ORYSJ,A0A0P0WJ43_ORYSJ Os05g0197900 Os05g0198000 OSNPB_050197900,Os09g0300150 OSNPB_090300150,Os04g0647425 OSNPB_040647425,Os05g0198100 OSNPB_050198100 ENOG411EKAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EKA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein, expressed (Os10g0128200 protein) Q7G5F5 Q7G5F5_ORYSJ Os10g0128200 LOC_Os10g03870 OsJ_30603 OSNPB_100128200 ENOG411EGVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0518600 protein,Os11g0517200 protein Q0ISH5,A0A0P0Y2N5 Q0ISH5_ORYSJ,A0A0P0Y2N5_ORYSJ Os11g0518600 Os11g0518600 OsJ_34051 OSNPB_110518600,Os11g0517200 OSNPB_110517200 ENOG411E3B6 CLPT1 Q93WL3 CLPT1_ARATH ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic (nClpC-like protein) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:21266658, PubMed:25921872). Clpt1 and clpt2 double mutants show delayed development, reduced plant growth, and virescent, serrated leaves (PubMed:25921872). Clpt1 and clpt2 double mutants are seedling lethal under autotrophic conditions (PubMed:21266658). {ECO:0000269|PubMed:21266658, ECO:0000269|PubMed:25921872}. FUNCTION: Accessory protein regulating the assembly of the plastidial Clp protease system (PubMed:21266658, PubMed:25921872). CLPT1 first binds to the heptameric P-ring containing the CLP3-6 subunits followed by CLPT2, and only then does the P-ring combine with the R-ring composed of the clpP1 and CLPR1-4 subunits (PubMed:21266658). Once the core complex is fully assembled, it then associates to the CLPC chaperone partner to form the functional protease (PubMed:21266658). CLPT1 and CLPT2 are partially redundant (PubMed:25921872). {ECO:0000269|PubMed:21266658, ECO:0000269|PubMed:25921872}. 26050 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic (nClpC-like protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid stroma [GO:0009532]; thylakoid [GO:0009579]; protein metabolic process [GO:0019538] locus:2138048; AT4G25370 clp protease-related protein At4g12060 chloroplastic-like Clp amino terminal domain containing protein, expressed (Os03g0247000 protein) (cDNA clone:J023123H08, full insert sequence) Q10P51 Q10P51_ORYSJ LOC_Os03g14280 Os03g0247000 OSNPB_030247000 ENOG411E3B7 Q1G3F4 Q1G3F4_ARATH Transmembrane protein 17529 Transmembrane protein integral component of membrane [GO:0016021] locus:4010713411; AT1G04555 NA Os02g0816700 protein Q6K6A5 Q6K6A5_ORYSJ Os02g0816700 Os02g0816700 OJ1136_C12.2 OsJ_08873 OSNPB_020816700 P0643F09.22 ENOG411E3B4 F5K20_160 Q9MA40,Q84LR2,Q84LR3,Q9M340,A0A1P8AVI7 Q9MA40_ARATH,Q84LR2_ARATH,Q84LR3_ARATH,Q9M340_ARATH,A0A1P8AVI7_ARATH INO80 complex subunit D-like protein (T20M3.13 protein) (Uncharacterized protein At1g05860) (Uncharacterized protein At1g05860/T20M3_11),INO80 complex subunit D-like protein,INO80 complex subunit D-like protein (Uncharacterized protein F5K20_160) 31176,23883,32950,31025,25028 INO80 complex subunit D-like protein (T20M3.13 protein) (Uncharacterized protein At1g05860) (Uncharacterized protein At1g05860/T20M3_11),INO80 complex subunit D-like protein,INO80 complex subunit D-like protein (Uncharacterized protein F5K20_160) histone acetyltransferase complex [GO:0000123],histone acetyltransferase complex [GO:0000123]; histone H4-K16 acetylation [GO:0043984]; histone H4-K5 acetylation [GO:0043981]; histone H4-K8 acetylation [GO:0043982] locus:2198698;,locus:2065959;,locus:2084470; AT1G05860,AT2G31600,AT3G53860 NA Os05g0304100 protein A0A0P0WKE2 A0A0P0WKE2_ORYSJ Os05g0304100 OSNPB_050304100 ENOG411E3B5 Q9SUP0,Q9FI10 CSPLQ_ARATH,CSPLW_ARATH CASP-like protein 1B2 (AtCASPL1B2),CASP-like protein 1B1 (AtCASPL1B1) 21148,20748 CASP-like protein 1B2 (AtCASPL1B2),CASP-like protein 1B1 (AtCASPL1B1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:2128649;,locus:2163386; AT4G20390,AT5G44550 CASP-like protein CASP-like protein 1B1 (OsCASPL1B1),Os12g0610800 protein (Fragment) Q0ILZ7,A0A0N7KUC5 CSPL6_ORYSJ,A0A0N7KUC5_ORYSJ Os12g0610800 LOC_Os12g41690 OsJ_035393 OsJ_36834,Os12g0610800 OSNPB_120610800 ENOG411E3B2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Optic atrophy 3 protein (OPA3) Os02g0312500 protein,Os02g0312500 protein (cDNA clone:J023085P21, full insert sequence) Q6Z7L9,B7EQD1 Q6Z7L9_ORYSJ,B7EQD1_ORYSJ OJ1233_A01.26-1 Os02g0312500 OsJ_06425 OSNPB_020312500,Os02g0312500 OSNPB_020312500 ENOG411E3B3 P57742 PFD5_ARATH Probable prefoldin subunit 5 Dwarf; Slow growth; Dark green; Short hypocotyl; Late flowering; Abnormal pavement cell morphology and microtubule development; Sensitive to salt-J. Salinas-2009 FUNCTION: Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). {ECO:0000250}. 16410 Probable prefoldin subunit 5 cytosol [GO:0005829]; prefoldin complex [GO:0016272]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; regulation of transcription, DNA-templated [GO:0006355] locus:2166811; AT5G23290 prefoldin subunit Os10g0488100 protein (Fragment),Os10g0488100 protein (Prefoldin subunit 5, putative, expressed) (Putative c-myc binding protein) (cDNA clone:001-125-D11, full insert sequence) Q0IWU1,Q7XD74 Q0IWU1_ORYSJ,Q7XD74_ORYSJ Os10g0488100 OSNPB_100488100,Os10g0488100 LOC_Os10g34670 OSJNBb0049A16.4 OSNPB_100488100 ENOG411E3B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0482700 protein A0A0P0XNN8 A0A0P0XNN8_ORYSJ Os09g0482700 OSNPB_090482700 ENOG411E3B1 Q9LW59,B3H5H9,A0A1I9LLU3,A0A1I9LLU4 Q9LW59_ARATH,B3H5H9_ARATH,A0A1I9LLU3_ARATH,A0A1I9LLU4_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein 89448,85024,76795,82289 RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2090920; AT3G23370 NA NA NA NA NA NA NA NA ENOG411E3B8 T8H10.14,AtREM4.2 Q93YN8,P93758 Q93YN8_ARATH,P93758_ARATH Remorin family protein (Uncharacterized protein At3g57540) (Uncharacterized protein T8H10.14),Putative DNA binding protein (Remorin family protein) 32867,30944 Remorin family protein (Uncharacterized protein At3g57540) (Uncharacterized protein T8H10.14),Putative DNA binding protein (Remorin family protein) locus:2103508;,locus:2054376; AT3G57540,AT2G41870 Remorin C-terminal region Remorin 4.1 (OsREM4.1) (Remorin group 4 member 1),Os03g0808300 protein (Remorin, C-terminal region family protein, expressed) (Remorin-like protein) (cDNA clone:006-211-F02, full insert sequence) Q7XII4,Q84M49 REM41_ORYSJ,Q84M49_ORYSJ REM4.1 Os07g0569100 LOC_Os07g38170 OJ1019_E02.9 OsJ_24800,Os03g0808300 LOC_Os03g59360 Os03g0808300 OsJ_13047 OSJNBa0059E14.3 OSJNBa0060M17.4 OSNPB_030808300 FUNCTION: Functions in abscisic acid (ABA) signaling downstream of BZIP23. Acts as antagonistic and negative regulator of brassinosteroid (BR) signaling. Binds to BAK1 and inhibits its interaction with the BR receptor BRI1. Inhibits the formation and subsequent activation of the BRI1-BAK1 receptor complex. {ECO:0000269|PubMed:27424498}. MISCELLANEOUS: Plants over-expressing REM4.1 are dwarf, with dark-green, short and wide flat leaf blades, short panicles, spikelets and grains, narrow bending angle of the lamina joint, and short leaf epidermis cells. {ECO:0000269|PubMed:27424498}. ENOG411E3B9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like Os11g0663100 protein,Os11g0664800 protein,Os11g0665000 protein,Os11g0664500 protein A0A0P0Y516,A0A0P0Y5T7,A0A0P0Y5K5,A0A0P0Y5H7 A0A0P0Y516_ORYSJ,A0A0P0Y5T7_ORYSJ,A0A0P0Y5K5_ORYSJ,A0A0P0Y5H7_ORYSJ Os11g0663100 OSNPB_110663100,Os11g0664800 OSNPB_110664800,Os11g0665000 OSNPB_110665000,Os11g0664500 OSNPB_110664500 ENOG411E3BV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: methyltransferase like NA NA NA NA NA NA NA ENOG411E3BW Q8GYE1,A0A1P8B9U9 Q8GYE1_ARATH,A0A1P8B9U9_ARATH Uncharacterized protein At5g06590 (Uncharacterized protein At5g06590/F15M7_12),Uncharacterized protein 34859,33024 Uncharacterized protein At5g06590 (Uncharacterized protein At5g06590/F15M7_12),Uncharacterized protein locus:2144108; AT5G06590 NA Os12g0623400 protein (Fragment) A0A0P0YCC0 A0A0P0YCC0_ORYSJ Os12g0623400 OSNPB_120623400 ENOG411E3BT DIR4,DIR15 Q9SKQ2,F4JUF8 DIR4_ARATH,DIR15_ARATH Dirigent protein 4 (AtDIR4),Dirigent protein 15 (AtDIR15) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 20427,20816 Dirigent protein 4 (AtDIR4),Dirigent protein 15 (AtDIR15) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2047127;,locus:2121249; AT2G21110,AT4G38700 disease resistance-responsive family protein Dirigent protein Q6ATP8 Q6ATP8_ORYSJ OSJNBa0028F23.22 LOC_Os03g59440 Os03g0809000 OsJ_13051 OSNPB_030809000 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E3BR SCL30 Q8L3X8 SRC30_ARATH Serine/arginine-rich SC35-like splicing factor SCL30 (At-SCL30) (AtSCL30) (SC35-like splicing factor 30) (Serine/arginine-rich splicing factor 30) FUNCTION: Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5' splice sites. {ECO:0000305}. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}. 29567 Serine/arginine-rich SC35-like splicing factor SCL30 (At-SCL30) (AtSCL30) (SC35-like splicing factor 30) (Serine/arginine-rich splicing factor 30) nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; identical protein binding [GO:0042802]; mRNA binding [GO:0003729]; mRNA splicing, via spliceosome [GO:0000398]; response to oxidative stress [GO:0006979]; RNA splicing [GO:0008380] locus:2099931; AT3G55460 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os12g0572300 protein (Os12g0572400 protein) (Fragment),Os12g0572400 protein (RNA recognition motif family protein, expressed) (cDNA clone:J013034H02, full insert sequence) A0A0P0YBM4,Q2QNB0 A0A0P0YBM4_ORYSJ,Q2QNB0_ORYSJ Os12g0572400 Os12g0572300 OSNPB_120572300 OSNPB_120572400,Os12g0572400 LOC_Os12g38430 Os12g0572400 OsJ_36595 OSNPB_120572400 ENOG411E3BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CASP-like protein Casparian strip membrane protein 2 (OsCASP2),CASP-like protein (Fragment) Q6Z1Y7,A0A0P0XAV8 CASP2_ORYSJ,A0A0P0XAV8_ORYSJ Os08g0101900 LOC_Os08g01160 B1147B12.21 OsJ_024703 P0015C07.4,Os08g0101900 OSNPB_080101900 FUNCTION: Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). {ECO:0000250}. ENOG411E3BP TAF12 Q9SR71 TAF12_ARATH Transcription initiation factor TFIID subunit 12 (TBP-associated factor 12) (AtTAF12) FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 57710 Transcription initiation factor TFIID subunit 12 (TBP-associated factor 12) (AtTAF12) SAGA complex [GO:0000124]; transcription factor TFIID complex [GO:0005669]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; RNA polymerase II activating transcription factor binding [GO:0001102]; TBP-class protein binding [GO:0017025]; histone H3 acetylation [GO:0043966]; regulation of transcription, DNA-templated [GO:0006355]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2100053; AT3G10070 transcription initiation factor Os01g0858500 protein Q0JHK4 Q0JHK4_ORYSJ Os01g0858500 Os01g0858500 OsJ_04136 OSNPB_010858500 ENOG411E3BQ ATL2 Q8L9T5 ATL2_ARATH RING-H2 finger protein ATL2 (EC 2.3.2.27) (Protein ARABIDOPSIS TOXICOS EN LEVADURA 2) (Protein ATL2) (RING-type E3 ubiquitin transferase ATL2) Sensitive to nitrogen starvation and glucose-J. Yamaguchi-2009 FUNCTION: May be involved in the early steps of the plant defense signaling pathway. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34052 RING-H2 finger protein ATL2 (EC 2.3.2.27) (Protein ARABIDOPSIS TOXICOS EN LEVADURA 2) (Protein ATL2) (RING-type E3 ubiquitin transferase ATL2) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to chitin [GO:0010200] TISSUE SPECIFICITY: Preferentially expressed around the apical meristem region. {ECO:0000269|PubMed:15238540}. locus:2089398; AT3G16720 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E3BZ Q9SR04 Q9SR04_ARATH At3g04700 (Carboxylate clamp-TPR protein (DUF1685)) (F7O18.17 protein) 21286 At3g04700 (Carboxylate clamp-TPR protein (DUF1685)) (F7O18.17 protein) locus:2084973; AT3G04700 expressed protein OSJNBa0071G03.3 protein (Os04g0282200 protein) (cDNA clone:001-127-D01, full insert sequence) Q7XX26 Q7XX26_ORYSJ Os04g0282200 Os04g0282200 OSJNBa0071G03.3 OSNPB_040282200 ENOG411E3BX GIS3 Q9C9H1 GIS3_ARATH Zinc finger protein GIS3 (Protein GLABROUS INFLORESCENCE STEMS 3) DISRUPTION PHENOTYPE: Decreased number of trichomes in cauline leaves, lateral branches, sepals and main stems. {ECO:0000269|PubMed:25640859}. FUNCTION: Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}. MISCELLANEOUS: Plants over-expressing GIS3 have increased trichome densities in sepals, cauline leaves, lateral branches, main inflorescence stems, and have ectopic trichomes on carpels. {ECO:0000269|PubMed:25640859}. 25600 Zinc finger protein GIS3 (Protein GLABROUS INFLORESCENCE STEMS 3) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cytokinin-activated signaling pathway [GO:0009736]; gibberellic acid mediated signaling pathway [GO:0009740]; glucosinolate metabolic process [GO:0019760]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome morphogenesis [GO:0010090] locus:2199367; AT1G68360 zinc finger protein Os01g0132766 protein (cDNA, clone: J100088J08, full insert sequence) Q943S6 Q943S6_ORYSJ Os01g0132766 Os01g0132766 OSJNBa0083M16.11 OSNPB_010132766 ENOG411E3BY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os08g0494400 protein (cDNA clone:J013000K10, full insert sequence),Os08g0495300 protein B7EAS5,B9G1K9 B7EAS5_ORYSJ,B9G1K9_ORYSJ Os08g0494400 Os08g0494400 OSNPB_080494400,Os08g0495300 OsJ_27790 OSNPB_080495300 ENOG411E3BG HDT1,HDT3,HDA3 Q9FVE6,Q9LZR5,F4J378 HDT1_ARATH,HDT3_ARATH,F4J378_ARATH Histone deacetylase HDT1 (HD-tuins protein 1) (Histone deacetylase 2a),Histone deacetylase HDT3 (HD-tuins protein 3) (Histone deacetylase 2c),Histone deacetylase 3 FUNCTION: Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for histone H3 'Lys-9' deacetylation. Involved in rRNA gene silencing in nucleolar dominance. Seems to be implicated in the regulation of genes involved in seeds development. {ECO:0000269|PubMed:10792817, ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:14992728, ECO:0000269|PubMed:15144374}.,FUNCTION: Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Involved in the modulation of abscisic acid and stress-responsive genes. {ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:16553900}. MISCELLANEOUS: Loss-of-function mutant (antisense inhibition) induces increased methylation of histone H3 'Lys-4' and hypomethylation of DNA at rDNA repeats. 26372,31830,25985 Histone deacetylase HDT1 (HD-tuins protein 1) (Histone deacetylase 2a),Histone deacetylase HDT3 (HD-tuins protein 3) (Histone deacetylase 2c),Histone deacetylase 3 nucleolus [GO:0005730]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; covalent chromatin modification [GO:0016569]; DNA mediated transformation [GO:0009294]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of transcription, DNA-templated [GO:0006355]; seed dormancy process [GO:0010162]; transcription, DNA-templated [GO:0006351],nucleolus [GO:0005730]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275]; negative regulation of transcription, DNA-templated [GO:0045892]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed in leaves, roots, stems, young plantlets, flowers and siliques. Highest levels in ovules, embryos, shoot apical meristems and first leaves. Also expressed in somatic embryos. {ECO:0000269|PubMed:10792817, ECO:0000269|PubMed:15144374}.,TISSUE SPECIFICITY: Expressed in leaves, roots, stems, young plantlets, flowers and siliques. Highest levels in ovules, embryos, shoot apical meristems and first leaves. Also expressed in somatic embryos. {ECO:0000269|PubMed:15144374, ECO:0000269|PubMed:16553900}. locus:2101655;,locus:2144623; AT3G44750,AT5G03740 Histone deacetylase Os01g0909500 protein,Os01g0909150 protein A0A0P0VBS5,A0A0P0VBW4 A0A0P0VBS5_ORYSJ,A0A0P0VBW4_ORYSJ Os01g0909500 OSNPB_010909500,Os01g0909150 OSNPB_010909150 ENOG411E3BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os05g0368600 protein (cDNA clone:001-020-A11, full insert sequence),Copper chaperone (CCH)-related protein-like (Os01g0933200 protein) Q6L585,Q5JMG8 Q6L585_ORYSJ,Q5JMG8_ORYSJ Os05g0368600 OJ1393_A07.13 OSNPB_050368600,Os01g0933200 Os01g0933200 OsJ_04662 OSNPB_010933200 P0423A12.20 P0506E04.41 ENOG411E3BB F4HR02 F4HR02_ARATH Nucleolin 28236 Nucleolin locus:2198571; AT1G19990 NA Os03g0249900 protein (Rap8, putative, expressed) (cDNA clone:001-014-H02, full insert sequence),Os03g0249900 protein (Fragment) Q10P22,A0A0N7KGY1 Q10P22_ORYSJ,A0A0N7KGY1_ORYSJ Os03g0249900 LOC_Os03g14580 Os03g0249900 OsJ_10150 OSNPB_030249900,Os03g0249900 OSNPB_030249900 ENOG411E3BC PMEI12,MQD22.9,MQD22.8 Q9FJR5,Q9FJR6,Q9FJR7 PMI12_ARATH,Q9FJR6_ARATH,Q9FJR7_ARATH Pectinesterase inhibitor 12 (Pectin methylesterase inhibitor 12) (AtPMEI12),At5g46950 (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Similarity to invertase inhibitor) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have enhanced susceptibility to infection by the necrotrophic pathogen Botrytis cinerea. {ECO:0000269|PubMed:28082716}. FUNCTION: Pectin methylesterase (PME) inhibitor involved in the maintenance of cell wall integrity in response to necrotrophic pathogens. Modulates PME activity and pectin methylesterification during infection by Botrytis cinerea and contributes to resistance against the pathogen. {ECO:0000269|PubMed:28082716}. 19070,19089,19164 Pectinesterase inhibitor 12 (Pectin methylesterase inhibitor 12) (AtPMEI12),At5g46950 (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein (Similarity to invertase inhibitor) apoplast [GO:0048046]; cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; plant-type cell wall organization or biogenesis [GO:0071669],cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2171032;,locus:2171027;,locus:2171012; AT5G46960,AT5G46950,AT5G46940 Invertase pectin methylesterase inhibitor Os02g0103200 protein A3A265 A3A265_ORYSJ Os02g0103200 OsJ_05006 OSNPB_020103200 ENOG411E3BA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger C3HC4 type domain containing protein expressed Os01g0919500 protein (cDNA clone:J013091M15, full insert sequence),Os01g0919500 protein (cDNA clone:001-022-D10, full insert sequence) (cDNA clone:001-204-D05, full insert sequence) Q5JLM2,Q5JLM3 Q5JLM2_ORYSJ,Q5JLM3_ORYSJ P0678F11.22-1 Os01g0919500 OSNPB_010919500,P0678F11.22-2 Os01g0919500 OsJ_04562 OSNPB_010919500 ENOG411E3BN Q9SIF5,Q9SIF3 GDL32_ARATH,GDL33_ARATH GDSL esterase/lipase At2g03980 (EC 3.1.1.-) (Extracellular lipase At2g03980),GDSL esterase/lipase At2g04020 (EC 3.1.1.-) (Extracellular lipase At2g04020) ARA:AT2G03980-MONOMER;,ARA:AT2G04020-MONOMER; 3.1.1.- 40758,35962 GDSL esterase/lipase At2g03980 (EC 3.1.1.-) (Extracellular lipase At2g03980),GDSL esterase/lipase At2g04020 (EC 3.1.1.-) (Extracellular lipase At2g04020) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2049661;,locus:2049641; AT2G03980,AT2G04020 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411E3BM ZHD6 Q9ZPW7 ZHD6_ARATH Zinc-finger homeodomain protein 6 (AtZHD6) (Homeobox protein 24) (AtHB-24) FUNCTION: Putative transcription factor. 29951 Zinc-finger homeodomain protein 6 (AtZHD6) (Homeobox protein 24) (AtHB-24) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}. locus:2062141; AT2G18350 homeobox protein NA NA NA NA NA NA NA ENOG411E3BJ NACA2 Q9SZY1,Q94JX9,Q8LGC6,A8MQP6,A0A1I9LR04 NACA4_ARATH,NACA2_ARATH,NACA5_ARATH,A8MQP6_ARATH,A0A1I9LR04_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 4 (NAC-alpha-like protein 4) (Alpha-NAC-like protein 4),Nascent polypeptide-associated complex subunit alpha-like protein 2 (NAC-alpha-like protein 2) (Alpha-NAC-like protein 2),Nascent polypeptide-associated complex subunit alpha-like protein 5 (NAC-alpha-like protein 5) (Alpha-NAC-like protein 5),Nascent polypeptide-associated complex (NAC), alpha subunit family protein,Nascent polypeptide-associated complex subunit alpha-like protein 2 FUNCTION: May promote appropriate targeting of ribosome-nascent polypeptide complexes. {ECO:0000250}. 23172,23712,22780,23115,25399 Nascent polypeptide-associated complex subunit alpha-like protein 4 (NAC-alpha-like protein 4) (Alpha-NAC-like protein 4),Nascent polypeptide-associated complex subunit alpha-like protein 2 (NAC-alpha-like protein 2) (Alpha-NAC-like protein 2),Nascent polypeptide-associated complex subunit alpha-like protein 5 (NAC-alpha-like protein 5) (Alpha-NAC-like protein 5),Nascent polypeptide-associated complex (NAC), alpha subunit family protein,Nascent polypeptide-associated complex subunit alpha-like protein 2 nascent polypeptide-associated complex [GO:0005854]; protein transport [GO:0015031],cytosol [GO:0005829]; nascent polypeptide-associated complex [GO:0005854]; protein transport [GO:0015031],nascent polypeptide-associated complex [GO:0005854] locus:2127681;,locus:2114703;,locus:2206975; AT4G10480,AT3G49470,AT1G33040 nascent polypeptide-associated complex subunit alpha-like protein Nascent polypeptide-associated complex alpha subunit, putative, expressed (Os03g0121700 protein) (Putative nascent polypeptide-associated complex alpha chain) (cDNA clone:J023142E05, full insert sequence),Os07g0407300 protein,Os01g0698900 protein Q8LMR3,B9FWP2,A0A0P0V707 Q8LMR3_ORYSJ,B9FWP2_ORYSJ,A0A0P0V707_ORYSJ Os03g0121700 LOC_Os03g02960 Os03g0121700 OJ1705B08.10 OsJ_09216 OSNPB_030121700,Os07g0407300 OsJ_23868 OSNPB_070407300,Os01g0698900 OSNPB_010698900 ENOG411E3BK Q8RY26,B3H5W4 Q8RY26_ARATH,B3H5W4_ARATH AT4g31110/F6E21_30 (DUF1997 family protein, putative (DUF1997)),DUF1997 family protein, putative (DUF1997) 28342,31049 AT4g31110/F6E21_30 (DUF1997 family protein, putative (DUF1997)),DUF1997 family protein, putative (DUF1997) locus:1005716370; AT4G31115 Protein of unknown function (DUF1997) Os08g0521800 protein (cDNA clone:001-040-E10, full insert sequence) Q84QR4 Q84QR4_ORYSJ OJ1081_B12.109 Os08g0521800 OJ1003_A09.38 OsJ_27977 OSNPB_080521800 ENOG411E3BH HVA22C Q9S784 HA22C_ARATH HVA22-like protein c (AtHVA22c) 22033 HVA22-like protein c (AtHVA22c) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; hyperosmotic salinity response [GO:0042538]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Predominantly expressed in flower buds and stem. {ECO:0000269|PubMed:12081371}. locus:2205055; AT1G69700 HVA22-like protein NA NA NA NA NA NA NA ENOG411E3BI OFP13 Q9FMC8 OPF13_ARATH Transcription repressor OFP13 (Ovate family protein 13) (AtOFP13) FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP13 show small rosette size, late flowering, reduced fertilization and blunt-end siliques. {ECO:0000305|PubMed:21886836}. 28383 Transcription repressor OFP13 (Ovate family protein 13) (AtOFP13) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2175453; AT5G04820 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E07E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-isomer specific 2-hydroxyacid dehydrogenase catalytic domain NA NA NA NA NA NA NA ENOG411DZWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase NA NA NA NA NA NA NA ENOG411DZWV SECA1,AGY1 Q9SYI0,A0A1P8B485,F4JG57 SECA1_ARATH,A0A1P8B485_ARATH,F4JG57_ARATH Protein translocase subunit SECA1, chloroplastic (AtcpSecA) (Protein ALBINO OR GLASSY YELLOW 1),Protein translocase subunit SecA,Albino or Glassy Yellow 1 DISRUPTION PHENOTYPE: Seedling lethal. Albino seedlings with yellow and translucent (glassy) lateral organs when grown heterotrophically. {ECO:0000269|PubMed:20194926, ECO:0000269|PubMed:21051552}. Albino cotyledons albino or glossy yellow rosette leaves with a small portion having albino/glassy yellow variegated leaves.,Chloroplasts are smaller than wild type. lack thylakoids and contain many plastoglobules.,Seedling lethal on soil but could produce a few rosette leaves on 1% sucrose media. No starch accumulation at the end of the diurnal cycle. Can grow heterotrophically but is sensitive to light. Seedling lethal (inferred from pigment defect); Albino embryos-N. Wang-2010 FUNCTION: Has a central role in coupling the hydrolysis of ATP to the transfer of proteins across the thylakoid membrane. Involved in photosynthetic acclimation and required for chloroplast biogenesis. {ECO:0000269|PubMed:20194926, ECO:0000269|PubMed:21051552}. MISCELLANEOUS: Cannot substitute for SECA2. 115183,115315,117414 Protein translocase subunit SECA1, chloroplastic (AtcpSecA) (Protein ALBINO OR GLASSY YELLOW 1),Protein translocase subunit SecA,Albino or Glassy Yellow 1 chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; ATP binding [GO:0005524]; ATPase-coupled protein transmembrane transporter activity [GO:0015462]; protein import [GO:0017038]; protein targeting [GO:0006605],intracellular [GO:0005622]; membrane [GO:0016020]; ATP binding [GO:0005524]; protein import [GO:0017038]; protein targeting [GO:0006605],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ATP binding [GO:0005524]; chloroplast organization [GO:0009658]; protein import [GO:0017038]; protein targeting [GO:0006605]; regulation of photosynthesis [GO:0010109]; response to absence of light [GO:0009646]; trichome morphogenesis [GO:0010090] DEVELOPMENTAL STAGE: Induced steadily during photomorphogenesis. {ECO:0000269|PubMed:20194926}. TISSUE SPECIFICITY: Expressed in green tissues, including cotyledons, rosette and cauline leaves, and sepals. Also detected at the base and the tip of the trichome. {ECO:0000269|PubMed:20194926}. locus:2141335; AT4G01800 Protein translocase subunit SecA Os01g0321300 protein A0A0P0V242 A0A0P0V242_ORYSJ Os01g0321300 OSNPB_010321300 ENOG411DZWJ ZEP Q9FGC7 ZEP_ARATH Zeaxanthin epoxidase, chloroplastic (AtZEP) (EC 1.14.15.21) (Protein ABA DEFICIENT 1) (AtABA1) (Protein IMPAIRED IN BABA-INDUCED STERILITY 3) (Protein LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6) (Protein NON-PHOTOCHEMICAL QUENCHING 2) DISRUPTION PHENOTYPE: Increased endogenous level of zeaxanthin and reduced level of ABA. Reduced size of leaves, inflorescences and flowers, early flowering, increased number of wilted plants, premature seed germination and reduced osmotic water permeability and ability to close stomata. Reduced susceptibility to virulent isolates of P.parasitica and sensitivity to BABA-induced priming. {ECO:0000269|PubMed:11124119, ECO:0000269|PubMed:11707572, ECO:0000269|PubMed:11779861, ECO:0000269|PubMed:12047634, ECO:0000269|PubMed:15548743, ECO:0000269|PubMed:15722464, ECO:0000269|PubMed:15983017, ECO:0000269|PubMed:16666794}. Wilty; Low ABA levels-O. Bjorkman-1998 FUNCTION: Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, ABA-dependent stomatal closure, seed development and dormancy, modulation of defense gene expression and disease resistance and non-photochemical quencing (NPQ). Through its role in ABA biosynthesis, regulates the expression of stress-responsive genes such as RD29A during osmotic stress and is required for normal plant growth during vegetative development. Is required for late skotomorphogenic growth through its role in the xanthophyll carotenoids neoxanthin, violaxanthin and antheraxanthin biosynthesis. Required for beta-aminobutyric acid (BABA)-induced priming in disease resistance, tolerance to salt and drought stresses and sterility. Participates in NPQ by regulating the level of zeaxanthin in photosynthetic energy conversion. NPQ is a process that maintains the balance between dissipation and utilization of light energy to minimize the generation of oxidizing molecules and the molecular damages they can generate. {ECO:0000269|PubMed:11779861, ECO:0000269|PubMed:12447533, ECO:0000269|PubMed:14722117, ECO:0000269|PubMed:15053765, ECO:0000269|PubMed:15548743, ECO:0000269|PubMed:15722464, ECO:0000269|PubMed:15983017, ECO:0000269|PubMed:16113213, ECO:0000269|PubMed:17416642, ECO:0000269|PubMed:17996011, ECO:0000269|PubMed:18680727, ECO:0000269|PubMed:19278749, ECO:0000269|PubMed:9668132}. MISCELLANEOUS: Plants overexpressing ZEP show increased levels of violaxanthin and ABA and increased tolerance to salt and drought stresses. PATHWAY: Plant hormone biosynthesis; abscisate biosynthesis. MetaCyc:AT5G67030-MONOMER; 1.14.13.90; 1.14.15.21 73842 Zeaxanthin epoxidase, chloroplastic (AtZEP) (EC 1.14.15.21) (Protein ABA DEFICIENT 1) (AtABA1) (Protein IMPAIRED IN BABA-INDUCED STERILITY 3) (Protein LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6) (Protein NON-PHOTOCHEMICAL QUENCHING 2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; FAD binding [GO:0071949]; zeaxanthin epoxidase [overall] activity [GO:0009540]; abscisic acid biosynthetic process [GO:0009688]; response to heat [GO:0009408]; response to red light [GO:0010114]; response to water deprivation [GO:0009414]; secondary metabolite biosynthetic process [GO:0044550]; sugar mediated signaling pathway [GO:0010182]; xanthophyll biosynthetic process [GO:0016123] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, and at lower levels in roots and siliques. {ECO:0000269|PubMed:11779861}. locus:2158083; AT5G67030 Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (By similarity) Zeaxanthin epoxidase, chloroplastic (OsZEP1) (EC 1.14.15.21) (Protein ABA DEFICIENT 1) (OsABA1),Os04g0448950 protein Q0JCU7,A0A0P0WAS5 ZEP_ORYSJ,A0A0P0WAS5_ORYSJ ZEP ABA1 Os04g0448900 LOC_Os04g37619 OSJNBa0064H22.16,Os04g0448950 OSNPB_040448950 DISRUPTION PHENOTYPE: Accumulation of endogenous zeaxanthin and reduced level of ABA. Wilty phenotype, increased water loss and premature seed germination. {ECO:0000269|PubMed:11244106}. FUNCTION: Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, seed development and dormancy. {ECO:0000269|PubMed:11244106}. ENOG411DZWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Os06g0230100 protein A0A0P0WUA1 A0A0P0WUA1_ORYSJ Os06g0230100 OSNPB_060230100 ENOG411DQF9 ANN4,ANNAT4 Q9ZVJ6,A0A1P8B1L4 ANXD4_ARATH,A0A1P8B1L4_ARATH Annexin D4 (AnnAt4),Annexin 4 DISRUPTION PHENOTYPE: Plants are hypersensitive to osmotic stress and abscisic acid (ABA) during germination and early seedling growth. {ECO:0000269|PubMed:15161963}. Germination and early seedling growth sensitive to osmotic stress and ABA-O. Park-2004 FUNCTION: May be involved in osmotic stress and abscisic acid signaling in a calcium-dependent manner. {ECO:0000269|PubMed:15161963}. R-ATH-114608;R-ATH-6798695; 36221,34494 Annexin D4 (AnnAt4),Annexin 4 plasmodesma [GO:0009506]; calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]; mRNA binding [GO:0003729]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544] TISSUE SPECIFICITY: Expressed mainly in roots and flowers. Lower in stems and leaves. {ECO:0000269|PubMed:11457958}. locus:2064222; AT2G38750 annexin D4-like Os05g0382600 protein (Fragment),Os05g0382600 protein (cDNA clone:006-305-B07, full insert sequence) (cDNA clone:006-310-E05, full insert sequence) (cDNA clone:J013001F11, full insert sequence) Q0DIK2,B7E4J4 Q0DIK2_ORYSJ,B7E4J4_ORYSJ Os05g0382600 Os05g0382600 OSNPB_050382600,Os05g0382600 OSNPB_050382600 ENOG411DQF8 KAB1 O23016 KCAB_ARATH Probable voltage-gated potassium channel subunit beta (K(+) channel subunit beta) (Potassium voltage beta 1) (KV-beta1) FUNCTION: Probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit. {ECO:0000269|PubMed:8837508}. R-ATH-6798695; 36539 Probable voltage-gated potassium channel subunit beta (K(+) channel subunit beta) (Potassium voltage beta 1) (KV-beta1) membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; voltage-gated ion channel activity [GO:0005244]; potassium ion transport [GO:0006813] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers (at protein level). {ECO:0000269|PubMed:8837508}. locus:2197793; AT1G04690 Potassium channel Probable voltage-gated potassium channel subunit beta (K(+) channel subunit beta) Q40648 KCAB_ORYSJ KOB1 Os02g0817500 LOC_Os02g57240 OJ1136_C12.15 P0643F09.35 FUNCTION: Probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit. MISCELLANEOUS: In vitro, interacts with the N-terminal part of A.thaliana KAT1, a voltage-gated potassium channel alpha subunit. ENOG411DQF3 Q3ECP7,A0A1P8AWE1,A0A1P8AWA4,A0A1P8AWE3,A0A1P8AWA9,A0A1P8AWE2,A0A1P8AWG7 ERDL5_ARATH,A0A1P8AWE1_ARATH,A0A1P8AWA4_ARATH,A0A1P8AWE3_ARATH,A0A1P8AWA9_ARATH,A0A1P8AWE2_ARATH,A0A1P8AWG7_ARATH Sugar transporter ERD6-like 5,Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 50740,44669,35756,48433,42362,44481,36694 Sugar transporter ERD6-like 5,Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2199539; AT1G54730 sugar transporter ERD6-like Os11g0643800 protein (cDNA, clone: J065199H08, full insert sequence) B7F8Z6 B7F8Z6_ORYSJ Os11g0643800 OsJ_34588 OSNPB_110643800 ENOG411DQF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os06g0275700 protein (Fragment) A0A0P0WV73 A0A0P0WV73_ORYSJ Os06g0275700 OSNPB_060275700 ENOG411DQF1 RRP6L2,RRP6L1 A9LLI7,Q0WVE8,A0A1P8AVS7,F4HWX0,A0A1P8AVW8,A0A1P8AVX1 RP6L2_ARATH,RP6L1_ARATH,A0A1P8AVS7_ARATH,F4HWX0_ARATH,A0A1P8AVW8_ARATH,A0A1P8AVX1_ARATH Protein RRP6-like 2 (AtRRP6L2),Protein RRP6-like 1 (AtRRP6L1),Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:18285452, PubMed:25211139). The double mutants rrp6l1 and rrp6l2 have a late flowering phenotype (PubMed:25211139). {ECO:0000269|PubMed:18285452, ECO:0000269|PubMed:25211139}. FUNCTION: Acts as an important epigenetic regulator through multiple silencing mechanisms (PubMed:23555312, PubMed:25211139). Involved in association with RRP6L1 in the silencing of the solo LTR locus. Controls levels of non-coding RNAs (ncRNAs) from the solo LTR locus. Seems to function independently of the RNA-mediated gene silencing (RdDM) pathway (PubMed:23555312). Functions redundantly with RRP6L1 in the regulation of FLC locus. Participates in the maintenance of trimethylated 'Lys-27' (H3K27me3) at FLC locus via the regulation of antisense long non-coding RNAs (lncRNAs) and the regulation of diverse antisense RNAs derived from the FLC locus. Seems not involved in the exosomal RNA degradation (PubMed:25211139). May be involved in poly(A)-mediated RNA degradation (PubMed:18285452). {ECO:0000269|PubMed:18285452, ECO:0000269|PubMed:23555312, ECO:0000269|PubMed:25211139}.,FUNCTION: Acts as an important epigenetic regulator through multiple silencing mechanisms (PubMed:23555312, PubMed:24726328, PubMed:24719467, PubMed:25211139). Involved in transcriptional gene silencing (TGS). Plays a role for DNA methylation in the RNA-directed DNA methylation (RdDM) pathway. Contributes to the methylation status of the retrotransposon SN1. Required for DNA methylation only at a subset of RdDM target loci (PubMed:24719467). Plays a regulatory role in RdDM through retention of non-coding RNAs (ncRNAs) in normal cells. Helps to retain Pol V-transcribed RNAs in chromatin to enable their scaffold function and is required for genome-wide Pol IV-dependent siRNA (24 nt siRNA) production that may involve retention of Pol IV transcripts (PubMed:24726328). Involved in association with RRP6L2 in the silencing of the solo LTR locus. Controls levels of ncRNAs from the solo LTR locus. Seems to function independently of the RdDM pathway (PubMed:23555312). Functions redundantly with RRP6L2 in the regulation of FLC locus. Participates in the maintenance of trimethylated 'Lys-27' (H3K27me3) at FLC locus via the regulation of antisense long non-coding RNAs (lncRNAs) and the regulation of diverse antisense RNAs derived from the FLC locus (PubMed:25211139). Seems not involved in the exosomal RNA degradation (PubMed:24726328, PubMed:25211139). Can complement the growth defect of a yeast mutant lacking RRP6 exonuclease (PubMed:18285452). {ECO:0000269|PubMed:18285452, ECO:0000269|PubMed:23555312, ECO:0000269|PubMed:24719467, ECO:0000269|PubMed:24726328, ECO:0000269|PubMed:25211139}. R-ATH-6791226; 97889,73483,67776,73724,67792,56810 Protein RRP6-like 2 (AtRRP6L2),Protein RRP6-like 1 (AtRRP6L1),Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]; polyadenylation-dependent RNA catabolic process [GO:0043633]; positive regulation of histone H3-K27 trimethylation [GO:1902466]; RNA-directed DNA methylation [GO:0080188]; rRNA processing [GO:0006364],nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; 3'-5'-exoribonuclease activity [GO:0000175]; nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]; positive regulation of histone H3-K27 trimethylation [GO:1902466]; RNA-directed DNA methylation [GO:0080188],intracellular [GO:0005622]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]; transferase activity [GO:0016740],nucleoplasm [GO:0005654]; 3'-5' exonuclease activity [GO:0008408]; nucleotide binding [GO:0000166]; single-stranded RNA binding [GO:0003727]; transferase activity [GO:0016740]; methylation-dependent chromatin silencing [GO:0006346]; positive regulation of production of siRNA involved in RNA interference [GO:1903705]; positive regulation of transcription from RNA polymerase V promoter [GO:1904281]; regulation of DNA methylation [GO:0044030]; RNA localization to chromatin [GO:1990280]; RNA-directed DNA methylation [GO:0080188] locus:2165189;,locus:2020113; AT5G35910,AT1G54440 exosome component 10-like Os10g0437200 protein A0A0P0XUY4 A0A0P0XUY4_ORYSJ Os10g0437200 OSNPB_100437200 ENOG411DQF0 GC1 A0A1P8BEA8,Q8L870,A0A1P8BEB4,A0A1P8BEA3,F4K294 A0A1P8BEA8_ARATH,Q8L870_ARATH,A0A1P8BEB4_ARATH,A0A1P8BEA3_ARATH,F4K294_ARATH Guanylyl cyclase 1,At5g05930 (Guanylyl cyclase 1) (Putative guanylate cyclase) (Uncharacterized protein At5g05930) ARA:GQT-606-MONOMER; 22425,30914,23111,24485,23811 Guanylyl cyclase 1,At5g05930 (Guanylyl cyclase 1) (Putative guanylate cyclase) (Uncharacterized protein At5g05930) locus:2153674; AT5G05930 guanylyl cyclase Os05g0453500 protein Q6I642 Q6I642_ORYSJ Os05g0453500 OJ1126_D01.8 OSNPB_050453500 ENOG411DQF7 NTMC2T6.1,NTMC2T6.2 Q93XX4,Q67XP8,A0A1I9LPP2,A0A1I9LPP1,B3H4I1,F4IW75 C2D61_ARATH,Q67XP8_ARATH,A0A1I9LPP2_ARATH,A0A1I9LPP1_ARATH,B3H4I1_ARATH,F4IW75_ARATH C2 domain-containing protein At1g53590 (N-terminal-TM-C2 domain type 6 protein 1) (NTMC2TYPE6.1),Calcium-dependent lipid-binding (CaLB domain) family protein (NTMC2T6.2 protein) (Uncharacterized protein At3g14590),Calcium-dependent lipid-binding (CaLB domain) family protein R-ATH-1660662; 84901,78060,72408,72970,83445,79843 C2 domain-containing protein At1g53590 (N-terminal-TM-C2 domain type 6 protein 1) (NTMC2TYPE6.1),Calcium-dependent lipid-binding (CaLB domain) family protein (NTMC2T6.2 protein) (Uncharacterized protein At3g14590),Calcium-dependent lipid-binding (CaLB domain) family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2024912;,locus:2089601; AT1G53590,AT3G14590 integral membrane single C2 domain protein C2 domain-containing protein-like (Os02g0313700 protein),Os02g0313700 protein Q6Z6R6,A0A0P0VI61 Q6Z6R6_ORYSJ,A0A0P0VI61_ORYSJ P0705A04.17-1 Os02g0313700 OSNPB_020313700,Os02g0313700 OSNPB_020313700 ENOG411DQF6 DHDPS1,DHDPS2 Q9LZX6,Q9FVC8 DAPA1_ARATH,DAPA2_ARATH 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic (HTPA synthase 1) (EC 4.3.3.7),4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic (HTPA synthase 2) (EC 4.3.3.7) Small rosette; Short roots; Elevated threonine levels-M. Vauterin-2000 FUNCTION: Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). {ECO:0000250}. PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4. ARA:AT2G45440-MONOMER; R-ATH-389661; 4.3.3.7 40620,40292 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic (HTPA synthase 1) (EC 4.3.3.7),4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic (HTPA synthase 2) (EC 4.3.3.7) chloroplast [GO:0009507]; 4-hydroxy-tetrahydrodipicolinate synthase [GO:0008840]; diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089] locus:2101921;,locus:2050936; AT3G60880,AT2G45440 Dihydrodipicolinate synthase Os04g0254000 protein (cDNA clone:J023080C02, full insert sequence),4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) (EC 4.3.3.7) Q0JEK1,A0A0P0WDS4 Q0JEK1_ORYSJ,A0A0P0WDS4_ORYSJ Os04g0254000 Os04g0254000 OSNPB_040254000,Os04g0574800 OSNPB_040574800 ENOG411DQF5 PER11 Q96519 PER11_ARATH Peroxidase 11 (Atperox P11) (EC 1.11.1.7) (ATP23a/ATP23b) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G68850-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37313 Peroxidase 11 (Atperox P11) (EC 1.11.1.7) (ATP23a/ATP23b) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]; rhythmic process [GO:0048511] TISSUE SPECIFICITY: Expressed in roots and stems. locus:2012428; AT1G68850 peroxidase Peroxidase (EC 1.11.1.7) Q9FP11 Q9FP11_ORYSJ prx77 Os06g0274800 OsJ_20954 OSNPB_060274800 P0038C05.20 P0676F10.31 ENOG411DQF4 APRR1 Q9LKL2 APRR1_ARATH Two-component response regulator-like APRR1 (ABI3-interacting protein 1) (Pseudo-response regulator 1) (Timing of CAB expression 1) semidominant; aberrant cycling pattern of the cab2::luc reporter; shortens the period of two distinct circadian bioluminescence rhythms the expression of chlorophyll a/b-binding protein (CAB) genes and the movements of primary leaves; seedlings grown in light or dark and mature light-grown plants are indistinguishable from the 2CAC transgenic parent (CS3755).,Phenotype not described. Short circadian rhythms in light-S. Kay-2000 FUNCTION: Controls photoperiodic flowering response. Component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Positive regulator of CCA1 and LHY expression. {ECO:0000269|PubMed:11100772, ECO:0000269|PubMed:19286557}. MISCELLANEOUS: Subject of targeted degradation by the 26S proteasome. ZEITLUPE (ADO1/ZTL) is the F-box protein that associates with the SCF (for Skp/Cullin/F-box) E3 ubiquitin ligase that is responsible for marking APRR1/TOC1 for turnover. CUL1 is the functional cullin for the SCF(ZTL) complex. APRR3 binding competitively inhibits the ADO1/ZTL interaction. 69195 Two-component response regulator-like APRR1 (ABI3-interacting protein 1) (Pseudo-response regulator 1) (Timing of CAB expression 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; circumnutation [GO:0010031]; flower development [GO:0009908]; negative regulation of gene expression [GO:0010629]; phosphorelay signal transduction system [GO:0000160]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, flowers and siliques. Restricted to the vasculature. {ECO:0000269|PubMed:10743655, ECO:0000269|PubMed:18055606}. locus:2163198; AT5G61380 Two-component response regulator-like Two-component response regulator-like PRR1 (Pseudo-response regulator 1) (OsPRR1) Q689G9 PRR1_ORYSJ PRR1 Os02g0618200 LOC_Os02g40510 OJ1014_H03.23 OJ1212_C01.9 OsJ_07546 FUNCTION: Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock (By similarity). {ECO:0000250}. ENOG411DQFK Q7Y1Z8,F4JGB9 Q7Y1Z8_ARATH,F4JGB9_ARATH Malonyl-CoA decarboxylase family protein (Malonyl-CoA decarboxylase like protein) (Putative malonyl-CoA decarboxylase),Malonyl-CoA decarboxylase family protein ARA:AT4G04320-MONOMER; R-ATH-390247; beta-Alanine metabolism (00410),Metabolic pathways (01100),Peroxisome (04146),Propanoate metabolism (00640) 58452,58324 Malonyl-CoA decarboxylase family protein (Malonyl-CoA decarboxylase like protein) (Putative malonyl-CoA decarboxylase),Malonyl-CoA decarboxylase family protein peroxisome [GO:0005777]; malonyl-CoA decarboxylase activity [GO:0050080]; fatty acid biosynthetic process [GO:0006633],malonyl-CoA decarboxylase activity [GO:0050080]; fatty acid biosynthetic process [GO:0006633] locus:2134872; AT4G04320 malonyl-CoA decarboxylase Os09g0394100 protein (Putative Malonyl-CoA decarboxylase, mitochondrial (MCD)) Q6H400 Q6H400_ORYSJ Os09g0394100 B1339H09.2 OSJNOa018M17.5 OSNPB_090394100 ENOG411DQFJ TET6 Q9C7C1 TET6_ARATH Tetraspanin-6 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 32256 Tetraspanin-6 integral component of membrane [GO:0016021]; organ growth [GO:0035265] locus:2099272; AT3G12090 Tetraspanin family Os05g0126100 protein (Putative senescence-associated protein) (cDNA clone:J013054A22, full insert sequence) (cDNA clone:J013167F21, full insert sequence),Os05g0126100 protein (Putative senescence-associated protein) (cDNA clone:001-029-E11, full insert sequence),Os01g0977100 protein Q6L4K6,Q75IM5,A0A0P0VDH5 Q6L4K6_ORYSJ,Q75IM5_ORYSJ,A0A0P0VDH5_ORYSJ Os05g0126100 OSJNBb0079L11.11 OSNPB_050126100 P0683F12.5,Os05g0126100 OSNPB_050126100 P0683F12.5,Os01g0977100 OSNPB_010977100 ENOG411DQFI Q9C723 NADE_ARATH Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+) synthase [glutamine-hydrolyzing]) (NAD(+) synthetase) PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1. ARA:AT1G55090-MONOMER; R-ATH-196807; 6.3.5.1 80900 Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+) synthase [glutamine-hydrolyzing]) (NAD(+) synthetase) cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; glutaminase activity [GO:0004359]; NAD+ synthase (glutamine-hydrolyzing) activity [GO:0003952]; NAD biosynthetic process [GO:0009435] locus:2205667; AT1G55090 glutamine-dependent NAD Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+) synthase [glutamine-hydrolyzing]) (NAD(+) synthetase),Os07g0167100 protein (Fragment) Q0D8D4,A0A0P0X3G2 NADE_ORYSJ,A0A0P0X3G2_ORYSJ Os07g0167100 LOC_Os07g07260,Os07g0167100 OSNPB_070167100 ENOG411DQFH PSY1,PSY P37271,F4KGX7 PSY_ARATH,F4KGX7_ARATH Phytoene synthase, chloroplastic (EC 2.5.1.32),PHYTOENE SYNTHASE FUNCTION: Catalyzes the reaction from prephytoene diphosphate to phytoene. {ECO:0000269|PubMed:25675505}. PATHWAY: Carotenoid biosynthesis; phytoene biosynthesis; all-trans-phytoene from geranylgeranyl diphosphate: step 1/1. {ECO:0000305}. ARA:AT5G17230-MONOMER;MetaCyc:AT5G17230-MONOMER; 2.5.1.32; Biosynthesis of secondary metabolites (01110),Carotenoid biosynthesis (00906),Biosynthesis of terpenoids and steroids (01062),Metabolic pathways (01100) 2.5.1.32 47487,49223 Phytoene synthase, chloroplastic (EC 2.5.1.32),PHYTOENE SYNTHASE chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; farnesyl-diphosphate farnesyltransferase activity [GO:0004310]; geranylgeranyl-diphosphate geranylgeranyltransferase activity [GO:0016767]; squalene synthase activity [GO:0051996]; carotenoid biosynthetic process [GO:0016117]; ergosterol biosynthetic process [GO:0006696],chloroplast [GO:0009507]; plastoglobule [GO:0010287]; farnesyl-diphosphate farnesyltransferase activity [GO:0004310]; geranylgeranyl-diphosphate geranylgeranyltransferase activity [GO:0016767]; phytoene synthase activity [GO:0046905]; squalene synthase activity [GO:0051996]; carotenoid biosynthetic process [GO:0016117]; ergosterol biosynthetic process [GO:0006696] locus:2167225; AT5G17230 phytoene synthase Os06g0729000 protein (Phytoene synthase) (cDNA clone:J023057D05, full insert sequence),Os06g0729000 protein (Phytoene synthase-like),Os12g0626400 protein (Phytoene synthase, chloroplast, putative, expressed) (cDNA clone:J033025L21, full insert sequence),Os12g0626400 protein (Fragment),Os09g0555500 protein (Fragment),Os06g0729000 protein (Fragment) Q5Z5B7,Q5Z5B6,Q2QLV9,Q0ILS1,A0A0P0XQQ5,A0A0P0X173 Q5Z5B7_ORYSJ,Q5Z5B6_ORYSJ,Q2QLV9_ORYSJ,Q0ILS1_ORYSJ,A0A0P0XQQ5_ORYSJ,A0A0P0X173_ORYSJ PSY1 Os06g0729000 OsJ_22735 OSJNBa0069C14.4-1 OSNPB_060729000,OSJNBa0069C14.4-2 Os06g0729000 OSNPB_060729000,Os12g0626400 LOC_Os12g43130 OSNPB_120626400,Os12g0626400 Os12g0626400 OSNPB_120626400,Os09g0555500 OSNPB_090555500,Os06g0729000 OSNPB_060729000 ENOG411DQFN B9DGX7 B9DGX7_ARATH AT3G54800 protein (Pleckstrin homology (PH) and lipid-binding START domains-containing protein) 83282 AT3G54800 protein (Pleckstrin homology (PH) and lipid-binding START domains-containing protein) lipid binding [GO:0008289] locus:2102465; AT3G54800 pleckstrin homology (PH) domain-containing protein lipid-binding START domain-containing protein NA NA NA NA NA NA NA ENOG411DQFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rop guanine nucleotide exchange factor 1 Os01g0675000 protein Q0JKH0 Q0JKH0_ORYSJ Os01g0675000 Os01g0675000 OsJ_02984 OSNPB_010675000 ENOG411DQFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Haloacid dehalogenase-like hydrolase family protein NA NA NA NA NA NA NA ENOG411DQFB GATA8 Q9SV30 GATA8_ARATH GATA transcription factor 8 Reduced germination rate. Increased dormancy. Low germination rate; Reduced response to cold stratification-H. Nonogaki-2005 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. 35629 GATA transcription factor 8 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623]; seed germination [GO:0009845] locus:2082637; AT3G54810 gata transcription factor Os02g0806400 protein (Fragment) A0A0P0VQY4 A0A0P0VQY4_ORYSJ Os02g0806400 OSNPB_020806400 ENOG411DQFA GTG1,GTG2 Q9XIP7,Q0WQG8,A0A1P8B832,A0A1P8B836,A0A1P8B833,F4JJP9 GTG1_ARATH,GTG2_ARATH,A0A1P8B832_ARATH,A0A1P8B836_ARATH,A0A1P8B833_ARATH,F4JJP9_ARATH GPCR-type G protein 1,GPCR-type G protein 2 DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with GTG2. The double mutants gtg1 and gtg2 are hyposensitive to abscisic acid. {ECO:0000269|PubMed:19135895}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with GTG1. The double mutants gtg1 and gtg2 are hyposensitive to abscisic acid. {ECO:0000269|PubMed:19135895}. gtg1-1 mutant plants do not show any obvious phenotypic abnormalities and are indistinguishable from wild-type plants.,These double mutants are hyposensitive to ABA in seed germination post-germination development root elongation ABA-induced gene expression and ABA-induced stomatal closure assays. However they have a normal response to ABA in inhibition of stomatal opening assays. These mutants are smaller than wild-type plants and flower earlier. They have normal endogenous levels of ABA. No differences in the transcript levels of CHLH FCA or GCR2 are observed in these mutants compared to wild-type plants.,gtg2-1 mutant plants do not show any obvious phenotypic abnormalities and are indistinguishable from wild-type plants. FUNCTION: Abscisic acid receptor. The GDP-bound form exhibits greater abscisic acid binding than the GTP-bound form (PubMed:19135895). Required for seedling growth and fertility (PubMed:23001037). {ECO:0000269|PubMed:19135895, ECO:0000269|PubMed:23001037}. MISCELLANEOUS: Has both a topology similar to GPCRs and a GTP-binding/GTPase activity. 53546,53514,46304,43573,32456,56338 GPCR-type G protein 1,GPCR-type G protein 2 endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; GTP binding [GO:0005525]; GTPase binding [GO:0051020]; post-embryonic development [GO:0009791]; response to abscisic acid [GO:0009737]; vegetative to reproductive phase transition of meristem [GO:0010228],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; GTP binding [GO:0005525],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; GTP binding [GO:0005525]; GTPase binding [GO:0051020]; post-embryonic development [GO:0009791]; response to abscisic acid [GO:0009737]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in cotyledons, leaves, stems, roots, flowers and guard cells. {ECO:0000269|PubMed:19135895}. locus:2010796;,locus:2137702; AT1G64990,AT4G27630 GPCR-type G protein GPCR-type G protein COLD1 (Protein CHILLING TOLERANCE DIVERGENCE 1) Q7X7S8 COLD1_ORYSJ COLD1 Os04g0600800 LOC_Os04g51180 OsJ_16035 OSJNBa0083N12.15 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are sensitive to cold. {ECO:0000269|PubMed:25728666}. FUNCTION: Involved in chilling tolerance. Interacts with the G-protein alpha subunit GPA1 to activate the calcium channel for sensing low temperature and to accelerate G-protein GTPase activity. {ECO:0000269|PubMed:25728666}. MISCELLANEOUS: In cold sensitive indica cultivars (AC A2XX57) Lys-187 is replaced by Met-187 or Thr-187. These polymorphisms are associated with divergence in chilling tolerance of rice cultivars. COLD1 confers adaptation of japonica rice to chilling and originated from the Chinese wild populations of Oryza rufipogon. {ECO:0000269|PubMed:25728666}. ENOG411DQFG Q9SAJ2,Q9SA26,A0A1P8ASK1,O64768,A0A1P8ASQ6 Q9SAJ2_ARATH,Q9SA26_ARATH,A0A1P8ASK1_ARATH,O64768_ARATH,A0A1P8ASQ6_ARATH Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein (T8K14.1 protein),F3O9.7 protein (Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein),Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein,Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein (Uncharacterized protein At2g35050) 137243,126781,128910,139705,113271 Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein (T8K14.1 protein),F3O9.7 protein (Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein),Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein,Kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein (Uncharacterized protein At2g35050) cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2206350;,locus:2032895;,locus:2044702; AT1G79570,AT1G16270,AT2G35050 (E 0.0) protein kinase family protein Os07g0438500 protein (Fragment),Os07g0438550 protein (Fragment) Q0D6U7,A0A0P0X5D2 Q0D6U7_ORYSJ,A0A0P0X5D2_ORYSJ Os07g0438500 Os07g0438500 OSNPB_070438500,Os07g0438550 OSNPB_070438550 ENOG411DQFF Q8W566,A0A1I9LRX2 Y3514_ARATH,A0A1I9LRX2_ARATH Uncharacterized exonuclease domain-containing protein At3g15140 (EC 3.1.-.-),Polynucleotidyl transferase, ribonuclease H-like superfamily protein 3.1.-.- 38670,32460 Uncharacterized exonuclease domain-containing protein At3g15140 (EC 3.1.-.-),Polynucleotidyl transferase, ribonuclease H-like superfamily protein mitochondrion [GO:0005739]; endoribonuclease activity, producing 5'-phosphomonoesters [GO:0016891]; exonuclease activity [GO:0004527]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; posttranscriptional gene silencing by RNA [GO:0035194]; regulation of production of siRNA involved in RNA interference [GO:0090065],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2083636; AT3G15140 Pfam:Exonuc_X-T Os06g0353400 protein (cDNA clone:J023087P03, full insert sequence),Os06g0353400 protein Q69SM2,C7J4A1 Q69SM2_ORYSJ,C7J4A1_ORYSJ Os06g0353400 OSJNBa0022O02.32-1 OSNPB_060353400,Os06g0353400 Os06g0353400 OSNPB_060353400 ENOG411DQFE FBX13 Q9SMZ3,A0A1P8B768 FBX13_ARATH,A0A1P8B768_ARATH F-box only protein 13,F-box family protein 51664,58328 F-box only protein 13,F-box family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2125889; AT4G33160 F-box only protein F-box protein family, AtFBX13-like protein (Os07g0617700 protein),Expressed protein (F-box protein, putative, expressed) (Os03g0399400 protein) Q8GSA3,Q94LF5 Q8GSA3_ORYSJ,Q94LF5_ORYSJ P0552F09.118 B1056G08.135 Os07g0617700 OSNPB_070617700,LOC_Os03g28130 Os03g0399400 Os03g28130 OSJNBa0015K03.1 OSNPB_030399400 ENOG411DQFD BEN1 O22133,A0A1P8AYJ2,A0A1P8AYJ1,A0A1P8AYD5 BEN1_ARATH,A0A1P8AYJ2_ARATH,A0A1P8AYJ1_ARATH,A0A1P8AYD5_ARATH Protein BRI1-5 ENHANCED 1 (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein DISRUPTION PHENOTYPE: Abnormal organs elongation leading to long inflorescences, leaves and petioles, especially in the light. {ECO:0000269|PubMed:17521414, ECO:0000269|PubMed:23893742}. organ-elongated phenotypes with their inflorescences leaves and petioles all longer than those of wild-type plants,Has shortened inflorescences and reduced rosette size and produces rounded leaves and shortened petioles. The width of the leaf blades of the ben1-1D mutant is greater than that of wild-type Tall inflorescence stems; Elongated leaves-J. Li-2007 FUNCTION: Element of the brassinosteroid metabolic pathway that regulates typhasterol, castasterone and brassinolide levels (PubMed:17521414). Involved in the control of organ elongation (PubMed:17521414, PubMed:23893742). {ECO:0000269|PubMed:17521414, ECO:0000269|PubMed:23893742}. MISCELLANEOUS: The ben1-1D (bri1-5 enhanced 1-1dominant) activation-tagging mutant suppresses the bri1-5 weak mutant allele of the brassinosteroid receptor gene BRI1. {ECO:0000269|PubMed:17521414}. PATHWAY: Plant hormone biosynthesis; brassinosteroid biosynthesis. {ECO:0000269|PubMed:17521414}. ARA:AT2G45400-MONOMER; 1.1.1.- 40261,27609,34299,35904 Protein BRI1-5 ENHANCED 1 (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein cytoplasm [GO:0005737]; coenzyme binding [GO:0050662]; oxidoreductase activity [GO:0016491]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid metabolic process [GO:0016131]; multicellular organism development [GO:0007275]; regulation of brassinosteroid biosynthetic process [GO:0010422]; response to absence of light [GO:0009646],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] DEVELOPMENTAL STAGE: First observed after seed germination, mainly in the root cap, and in elongation and maturation zones, and, to a lower extent, in the apical meristem zone. Later present in roots, with higher levels in light conditions than in darkness. Weak levels in young flowers. Progressive accumulation in developing siliques, at both ends. In rosette leaves, mainly localized in vascular tissues and hydathodes. {ECO:0000269|PubMed:17521414}. TISSUE SPECIFICITY: Mainly present in cell elongating-containing tissues. Strongly expressed in roots and flowers, also observed in petioles, stems, leaves and siliques. {ECO:0000269|PubMed:17521414}. locus:2050882; AT2G45400 Male sterility protein NA NA NA NA NA NA NA ENOG411DQFZ IDD11,IDD7 Q9LRW7,Q8H1F5,A0A1I9LR14,A0A1I9LR16 IDD11_ARATH,IDD7_ARATH,A0A1I9LR14_ARATH,A0A1I9LR16_ARATH Protein indeterminate-domain 11,Protein indeterminate-domain 7,Indeterminate(ID)-domain 11 FUNCTION: Probable transcription factor. {ECO:0000305}. 56727,50903,56107,54379 Protein indeterminate-domain 11,Protein indeterminate-domain 7,Indeterminate(ID)-domain 11 DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] locus:2087979;,locus:2205672; AT3G13810,AT1G55110 zinc finger protein Os01g0195000 protein (Putative zinc finger protein ID1),Os01g0572300 protein Q5SMY2,A0A0N7KD71 Q5SMY2_ORYSJ,A0A0N7KD71_ORYSJ Os01g0195000 OsJ_00729 OSNPB_010195000 P0001B06.25 P0498B01.11,Os01g0572300 OSNPB_010572300 ENOG411DQFY P82658 TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic (P19) 24979 Thylakoid lumenal 19 kDa protein, chloroplastic (P19) chloroplast thylakoid lumen [GO:0009543]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] AT3G63540 Thylakoid lumenal 19 kDa protein Os08g0504500 protein (cDNA clone:001-101-D09, full insert sequence) Q6ZK86 Q6ZK86_ORYSJ Os08g0504500 Os08g0504500 OJ1134_H03.7 OsJ_27860 OSNPB_080504500 ENOG411DQFX FKGP Q9LNJ9,A0A1P8APH1,A0A1P8API3,A0A1P8APH6 FKGP_ARATH,A0A1P8APH1_ARATH,A0A1P8API3_ARATH,A0A1P8APH6_ARATH Bifunctional fucokinase/fucose pyrophosphorylase (AtFKGP) [Includes: L-fucokinase (EC 2.7.1.52); Fucose-1-phosphate guanylyltransferase (EC 2.7.7.30) (GDP-fucose pyrophosphorylase)],L-fucokinase/GDP-L-fucose pyrophosphorylase DISRUPTION PHENOTYPE: No visible phenotype and no alteration of the sugar composition of cell wall polysaccharides, but accumulation of free L-fucose. {ECO:0000269|PubMed:18199744}. fkgp-1 mutants have about 40 times more L-fucose than wild type Arabidopsis plants but the levels of other monosaccharides do not appear to differ significantly in the mutants. No obvious phenotypic abnormalities were observed in the fkgp-1 mutants nor were any differences in the sugar composition of cell wall polysaccharides detected.,fkgp-2 mutants have about 40 times more L-fucose than wild type Arabidopsis plants. No obvious phenotypic abnormalities were observed in the fkgp-2 mutants nor were any differences in the sugar composition of cell wall polysaccharides detected. FUNCTION: Bifunctional enzyme involved in the salvage pathway which converts free L-fucose to GDP-L-fucose. The sugar-1-kinase activity has a strict substrate specificity for L-fucose and ATP. The pyrophosphorylase activity has a strict substrate specificity for L-fucose 1-phosphate and GTP. {ECO:0000269|PubMed:18199744}. R-ATH-6787639; 2.7.1.52; 2.7.7.30 116351,95471,105347,104356 Bifunctional fucokinase/fucose pyrophosphorylase (AtFKGP) [Includes: L-fucokinase (EC 2.7.1.52); Fucose-1-phosphate guanylyltransferase (EC 2.7.7.30) (GDP-fucose pyrophosphorylase)],L-fucokinase/GDP-L-fucose pyrophosphorylase ATP binding [GO:0005524]; fucokinase activity [GO:0050201]; fucose-1-phosphate guanylyltransferase activity [GO:0047341]; metal ion binding [GO:0046872]; carbohydrate metabolic process [GO:0005975]; GDP-L-fucose salvage [GO:0042352],ATP binding [GO:0005524]; kinase activity [GO:0016301] TISSUE SPECIFICITY: Ubiquitous. Highest expression in flower buds. {ECO:0000269|PubMed:18199744}. locus:2035362; AT1G01220 Bifunctional fucokinase fucose GHMP kinases putative ATP-binding protein, expressed (Os03g0115100 protein) (cDNA clone:J023069I12, full insert sequence),Os03g0115100 protein (Fragment) Q8GZW3,A0A0P0VS97 Q8GZW3_ORYSJ,A0A0P0VS97_ORYSJ OSJNBa0090O10.21 LOC_Os03g02410 Os03g0115100 OSNPB_030115100,Os03g0115100 OSNPB_030115100 ENOG411DQFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0218701 protein (Fragment),Os04g0218600 protein (Fragment),Os10g0581000 protein (Fragment) A0A0P0W7X2,A0A0P0W853,A0A0N7KSA3 A0A0P0W7X2_ORYSJ,A0A0P0W853_ORYSJ,A0A0N7KSA3_ORYSJ Os04g0218701 OSNPB_040218701,Os04g0218600 OSNPB_040218600,Os10g0581000 OSNPB_100581000 ENOG411DQFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aminopeptidase NA NA NA NA NA NA NA ENOG411DQFQ UBP5 O22207 UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12) (Deubiquitinating enzyme 5) (AtUBP5) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) Pale green seeds and seedlings-D. Meinke-2004 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. {ECO:0000269|PubMed:10898935}. ARA:AT2G40930-MONOMER; R-ATH-5689880; 3.4.19.12 103875 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12) (Deubiquitinating enzyme 5) (AtUBP5) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2058490; AT2G40930 ubiquitin carboxyl-terminal hydrolase Os11g0473200 protein (Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed),Os11g0473350 protein (Fragment) Q2R4I5,A0A0P0Y308 Q2R4I5_ORYSJ,A0A0P0Y308_ORYSJ LOC_Os11g28360 Os11g0473200 OSNPB_110473200,Os11g0473350 OSNPB_110473350 ENOG411DQFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding protein OSJNBa0016O02.7 protein (Os04g0467300 protein),Os04g0516300 protein Q7XJW3,A0A0P0WCL3 Q7XJW3_ORYSJ,A0A0P0WCL3_ORYSJ OSJNBa0016O02.7 Os04g0467300 OSNPB_040467300,Os04g0516300 OSNPB_040516300 ENOG411DQFW PGR3 P0C7R3,Q9SZ52,A0A1P8AWD9 PP106_ARATH,PP344_ARATH,A0A1P8AWD9_ARATH Pentatricopeptide repeat-containing protein At1g64583, mitochondrial,Pentatricopeptide repeat-containing protein At4g31850, chloroplastic (Protein PROTON GRADIENT REGULATION 3),Tetratricopeptide repeat (TPR)-like superfamily protein FUNCTION: Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. {ECO:0000269|PubMed:15053768}. 57889,124194,54963 Pentatricopeptide repeat-containing protein At1g64583, mitochondrial,Pentatricopeptide repeat-containing protein At4g31850, chloroplastic (Protein PROTON GRADIENT REGULATION 3),Tetratricopeptide repeat (TPR)-like superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:6530298167;,locus:2116772; AT1G64583,AT4G31850 Pentatricopeptide repeat-containing protein Os10g0421800 protein (Fragment) Q0IXM5 Q0IXM5_ORYSJ Os10g0421800 OSNPB_100421800 ENOG411DQFV MON1 Q9SKN1 MON1_ARATH Vacuolar fusion protein MON1 homolog DISRUPTION PHENOTYPE: Severe plant growth defects, such as short root phenotype, retarded growth and dwarf phenotype. {ECO:0000269|PubMed:10617197}. FUNCTION: Plays an important role in membrane trafficking through the secretory apparatus. In complex with CCZ1, acts as a guanine exchange factor (GEF) for RABG3F of the Rab7 protein family. Promotes the exchange of GDP to GTP, converting RABG3F from an inactive GDP-bound form into an active GTP-bound form. The RABG3F active form is involved in protein trafficking from prevacuolar compartments (PVCs) to vacuoles. May serve as a linker between Rab5 and Rab7 protein families in PVCs and mediate PVC maturation. {ECO:0000269|PubMed:24824487}. MISCELLANEOUS: Due to the stability of its transcription during plant development, this gene is proposed as a reference gene for transcript normalization. {ECO:0000305|PubMed:16166256}. R-ATH-8876198; 66924 Vacuolar fusion protein MON1 homolog endomembrane system [GO:0012505]; endosome [GO:0005768]; late endosome [GO:0005770]; guanyl-nucleotide exchange factor activity [GO:0005085]; intracellular protein transport [GO:0006886]; late endosome to vacuole transport [GO:0045324]; plant organ development [GO:0099402]; vacuole organization [GO:0007033]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Widely expressed at stable levels. {ECO:0000269|PubMed:16166256}. locus:2057552; AT2G28390 vacuolar fusion protein MON1 homolog Vacuolar fusion protein MON1 homolog Q5JL08 MON1_ORYSJ MON1 Os01g0976000 LOC_Os01g74460 P0020E09.1 P0459B04.31 FUNCTION: Plays an important role in membrane trafficking through the secretory apparatus. In complex with CCZ1, acts as a guanine exchange factor (GEF) for Rab7 protein family. Promotes the exchange of GDP to GTP, converting it from an inactive GDP-bound form into an active GTP-bound form. The active form is involved in protein trafficking from prevacuolar compartments (PVCs) to vacuoles. May serve as a linker between Rab5 and Rab7 protein families in PVCs and mediate PVC maturation. {ECO:0000250|UniProtKB:Q9SKN1}. ENOG411DQFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Expressed protein (Os03g0216300 protein) (cDNA clone:J033107K05, full insert sequence),Os03g0216300 protein (Fragment) Q10PZ2,A0A0P0VUS3 Q10PZ2_ORYSJ,A0A0P0VUS3_ORYSJ LOC_Os03g11690 Os03g0216300 OSNPB_030216300,Os03g0216300 OSNPB_030216300 ENOG411DQFT MTX1 O64471,A0A1P8B0Y5 MTX_ARATH,A0A1P8B0Y5_ARATH Mitochondrial outer membrane import complex protein METAXIN,Metaxin-like protein DISRUPTION PHENOTYPE: Decreased growth, abnormal leaf morphology and ectopic floral development and sterility. Higher starch accumulation in chloroplasts and reduced rates of mitochondrial protein import. {ECO:0000269|PubMed:17981999}. Diminished growth after leaf emergence abnormal leaf morphology ectopic floral development sterile. Large starch deposits within the chloroplasts of leaf mesophyll cells. Dwarf; Abnormal leaf morphology; Abnormal floral development; Sterile; Elevated starch levels-J. Whelan-2007 FUNCTION: Involved in transport of proteins into the mitochondrion. {ECO:0000269|PubMed:17981999}. 35854,27217 Mitochondrial outer membrane import complex protein METAXIN,Metaxin-like protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; plastid [GO:0009536]; protein targeting to mitochondrion [GO:0006626] TISSUE SPECIFICITY: Expressed in roots, young cotyledons, flowers and leaves. {ECO:0000269|PubMed:14730085}. locus:2059024; AT2G19080 Inherit from KOG: Metaxin 3 NA NA NA NA NA NA NA ENOG411EG21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetase class II (D K and N) family protein NA NA NA NA NA NA NA ENOG411EG28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Yippee NA NA NA NA NA NA NA ENOG411EHY0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GatB domain NA NA NA NA NA NA NA ENOG411EHY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bowman-Birk type NA NA NA NA NA NA NA ENOG411EHY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase Rpc34 subunit NA NA NA NA NA NA NA ENOG411EHYC F4K8V7 F4K8V7_ARATH F-box associated ubiquitination effector family protein 20791 F-box associated ubiquitination effector family protein locus:504954962; AT5G44345 F-box associated domain NA NA NA NA NA NA NA ENOG411EHYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0694400 protein C7IXA8 C7IXA8_ORYSJ Os01g0694400 Os01g0694400 OSNPB_010694400 ENOG411EHYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0108450 protein A0A0P0WGX9 A0A0P0WGX9_ORYSJ Os05g0108450 OSNPB_050108450 ENOG411EHYM Q9C9G0,B3H767 Q9C9G0_ARATH,B3H767_ARATH At1g68250 (Uncharacterized protein T22E19.12),Uncharacterized protein 14818,12349 At1g68250 (Uncharacterized protein T22E19.12),Uncharacterized protein locus:2199292; AT1G68250 NA NA NA NA NA NA NA NA ENOG411EB9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411EB9B F4IR05,F4HVX7,A0A1P8B1Z1,A0A1P8B1Z3 CERL2_ARATH,CERL1_ARATH,A0A1P8B1Z1_ARATH,A0A1P8B1Z3_ARATH Protein CER1-like 2,Protein CER1-like 1,Fatty acid hydroxylase superfamily 70573,72093,71656,67371 Protein CER1-like 2,Protein CER1-like 1,Fatty acid hydroxylase superfamily endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; lipid biosynthetic process [GO:0008610]; lipid metabolic process [GO:0006629],integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; lipid biosynthetic process [GO:0008610] TISSUE SPECIFICITY: Not detected in any tissues. {ECO:0000269|PubMed:21386033}.,TISSUE SPECIFICITY: Expressed in flowers and siliques. Not detected in pollen, pedicels and seeds. {ECO:0000269|PubMed:21386033, ECO:0000269|PubMed:8718622}. locus:2040666;,locus:2204813; AT2G37700,AT1G02190 WAX2 C-terminal domain NA NA NA NA NA NA NA ENOG411EB9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EIQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB98 Q9LUU5,Q9LJ39,Q9LUP1 FB148_ARATH,FB185_ARATH,FBK61_ARATH Putative F-box protein At3g17265,Putative F-box protein At3g24700,Putative F-box/kelch-repeat protein At3g17570 39724,30708,44467 Putative F-box protein At3g17265,Putative F-box protein At3g24700,Putative F-box/kelch-repeat protein At3g17570 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:1005716539;,locus:2090482; AT3G17265,AT3G24700,AT3G17570 F-box associated NA NA NA NA NA NA NA ENOG411EIQ8 Q3E926,Q3E927,A8MQK9,A8MRY4 Q3E926_ARATH,Q3E927_ARATH,A8MQK9_ARATH,A8MRY4_ARATH Putative membrane lipoprotein 8753,8783,10625,10717 Putative membrane lipoprotein locus:1005716879;,locus:1005716874;,locus:4010714057;,locus:4010713973; AT5G26717,AT5G26692,AT5G58412,AT5G26673 Encodes a Plant thionin family protein NA NA NA NA NA NA NA ENOG411EB93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: seed maturation protein PM23 Os12g0581700 protein (Seed maturation protein PM23, putative, expressed) (cDNA clone:J013066M24, full insert sequence),Os12g0581700 protein,Os12g0581700 protein (Fragment) Q2QN28,A0A0P0YC46,A0A0P0YBZ6 Q2QN28_ORYSJ,A0A0P0YC46_ORYSJ,A0A0P0YBZ6_ORYSJ LOC_Os12g39200 Os12g0581700 OsJ_36662 OSNPB_120581700,Os12g0581700 OSNPB_120581700 ENOG411EB90 KCS8 Q4V3C9 KCS8_ARATH 3-ketoacyl-CoA synthase 8 (KCS-8) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 8) (VLCFA condensing enzyme 8) PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT2G15090-MONOMER; 2.3.1.199 54191 3-ketoacyl-CoA synthase 8 (KCS-8) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 8) (VLCFA condensing enzyme 8) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in leaves and seedlings. {ECO:0000269|PubMed:18465198}. locus:2055782; AT2G15090 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411EB91 RLP54 F4KHA2 F4KHA2_ARATH Receptor like protein 54 88797 Receptor like protein 54 locus:2173777; AT5G40170 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EIQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQP F4KBG4 F4KBG4_ARATH Nuclease 17024 Nuclease locus:2148690; AT5G28950 Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EIQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LMWPc NA NA NA NA NA NA NA ENOG411E7YV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9F0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 NA NA NA NA NA NA NA ENOG411E9F1 TGG2,TGG1,TGG3 Q9C5C2,P37702,Q3E8E5 BGL37_ARATH,BGL38_ARATH,BGL39_ARATH Myrosinase 2 (EC 3.2.1.147) (Beta-glucosidase 37) (AtBGLU37) (Sinigrinase 2) (Thioglucosidase 2),Myrosinase 1 (EC 3.2.1.147) (Beta-glucosidase 38) (AtBGLU38) (EC 3.2.1.21) (Sinigrinase 1) (Thioglucosidase 1),Putative myrosinase 3 (EC 3.2.1.147) (Beta-glucosidase 39) (AtBGLU39) (Sinigrinase 3) (Thioglucosidase 3) contains only 1% of wild-type myrosinase activity. Among the above-ground tissues the activity is only detected in flowers.,contains only 5% of wild-type myrosinase activity in the above-ground tissues FUNCTION: May degrade glucosinolates (glucose residue linked by a thioglucoside bound to an amino acid derivative) to glucose, sulfate and any of the products: thiocyanates, isothiocyanates, nitriles, epithionitriles or oxazolidine-2-thiones. These toxic degradation products can deter insect herbivores. Seems to function in abscisic acid (ABA) and methyl jasmonate (MeJA) signaling in guard cells. Functionally redundant with TGG1. {ECO:0000269|PubMed:16640593, ECO:0000269|PubMed:19433491}.,FUNCTION: Degradation of glucosinolates (glucose residue linked by a thioglucoside bound to an amino acid derivative) to glucose, sulfate and any of the products: thiocyanates, isothiocyanates, nitriles, epithionitriles or oxazolidine-2-thiones. These toxic degradation products can deter insect herbivores. Seems to function in abscisic acid (ABA) and methyl jasmonate (MeJA) signaling in guard cells. Functionally redundant with TGG2. Hydrolyzes sinigrin and, with lower efficiency, p-nitrophenyl beta-D-glucoside. {ECO:0000269|PubMed:15643972, ECO:0000269|PubMed:16640593, ECO:0000269|PubMed:19433491, ECO:0000269|PubMed:19703694}. MISCELLANEOUS: It seems that the absence of a catalytic proton donor in plant myrosinases is not impairing the hydrolysis of glucosinolates. MetaCyc:AT5G25980-MONOMER;,MetaCyc:AT5G26000-MONOMER;,ARA:AT5G48375-MONOMER; R-ATH-189085; 3.2.1.147; 3.2.1.147,3.2.1.147; 3.2.1.21 62732,61133,50758 Myrosinase 2 (EC 3.2.1.147) (Beta-glucosidase 37) (AtBGLU37) (Sinigrinase 2) (Thioglucosidase 2),Myrosinase 1 (EC 3.2.1.147) (Beta-glucosidase 38) (AtBGLU38) (EC 3.2.1.21) (Sinigrinase 1) (Thioglucosidase 1),Putative myrosinase 3 (EC 3.2.1.147) (Beta-glucosidase 39) (AtBGLU39) (Sinigrinase 3) (Thioglucosidase 3) apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosolic ribosome [GO:0022626]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; beta-glucosidase activity [GO:0008422]; thioglucosidase activity [GO:0019137]; abscisic acid-activated signaling pathway [GO:0009738]; carbohydrate metabolic process [GO:0005975]; defense response to insect [GO:0002213]; glucosinolate catabolic process [GO:0019762]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosolic ribosome [GO:0022626]; peroxisome [GO:0005777]; plant-type cell wall [GO:0009505]; thylakoid [GO:0009579]; vacuole [GO:0005773]; beta-glucosidase activity [GO:0008422]; metal ion binding [GO:0046872]; scopolin beta-glucosidase activity [GO:0102483]; thioglucosidase activity [GO:0019137]; abscisic acid-activated signaling pathway [GO:0009738]; carbohydrate metabolic process [GO:0005975]; defense response to insect [GO:0002213]; glucosinolate catabolic process [GO:0019762]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to insect [GO:0009625]; response to salt stress [GO:0009651],beta-glucosidase activity [GO:0008422]; thioglucosidase activity [GO:0019137]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; response to hormone [GO:0009725]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in phloem-associated cells. {ECO:0000269|PubMed:16640593}.,TISSUE SPECIFICITY: Expressed in guard cells, phloem-associated cells and myrosin cells. {ECO:0000269|PubMed:15316292}.,TISSUE SPECIFICITY: Expressed specifically in stamens and petals. {ECO:0000269|PubMed:12010464}. locus:2180567;,locus:2180597;,locus:504954978; AT5G25980,AT5G26000,AT5G48375 tgg1 bglu38 tgg1 (thioglucoside glucohydrolase 1) NA NA NA NA NA NA NA ENOG411E9F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os11g0241900 protein (Fragment),Os12g0516800 protein,Os12g0554100 protein (Fragment) A0A0P0Y0J3,A0A0P0YB26,A0A0P0YB85 A0A0P0Y0J3_ORYSJ,A0A0P0YB26_ORYSJ,A0A0P0YB85_ORYSJ Os11g0241900 OSNPB_110241900,Os12g0516800 OSNPB_120516800,Os12g0554100 OSNPB_120554100 ENOG411E9F3 TIFY7 Q8W4J8,A0A1P8API7 TIF7_ARATH,A0A1P8API7_ARATH Protein TIFY 7 (Jasmonate ZIM domain-containing protein 9),TIFY domain/Divergent CCT motif family protein FUNCTION: Repressor of jasmonate responses. Jasmonoyl-isoleucine (JA-Ile) specifically promotes COI1-TIFY7/JAZ9 interaction. {ECO:0000269|PubMed:19151223}. 28842,30326 Protein TIFY 7 (Jasmonate ZIM domain-containing protein 9),TIFY domain/Divergent CCT motif family protein nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:2033607; AT1G70700 TIFY NA NA NA NA NA NA NA ENOG411E9F4 NRPD5B,NRPE5A,RPB5D Q9ZVB9,Q9M1J2,A0A1P8B115,A0A1P8B0Z3 RPD5B_ARATH,RPE5A_ARATH,A0A1P8B115_ARATH,A0A1P8B0Z3_ARATH DNA-directed RNA polymerases IV and V subunit 5B (DNA-directed RNA polymerase 23kD subunit),DNA-directed RNA polymerase V subunit 5A,RNA polymerase II fifth largest subunit, D DISRUPTION PHENOTYPE: Partial loss of methylation and silencing of RdDM targets, probably due to the redundancy with NRPE5B. {ECO:0000269|PubMed:19141635, ECO:0000269|PubMed:21150311}. FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase V involved in RNA-directed DNA methylation-dependent (RdDM) silencing of endogenous repeated sequences, including transposable elements. Required for establishment of DNA methylation. {ECO:0000269|PubMed:19110459, ECO:0000269|PubMed:21150311}. R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 24901,25586,22671,20734 DNA-directed RNA polymerases IV and V subunit 5B (DNA-directed RNA polymerase 23kD subunit),DNA-directed RNA polymerase V subunit 5A,RNA polymerase II fifth largest subunit, D DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351],DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed inleaves, flower buds, flowers and siliques. {ECO:0000269|PubMed:19141635}.,TISSUE SPECIFICITY: Expressed in roots, leaves, siliques and seeds, and to a lower level, in flower buds and flowers. {ECO:0000269|PubMed:19141635}. locus:2040257;,locus:2080650; AT2G41340,AT3G57080 RNA polymerase II fifth largest subunit D NA NA NA NA NA NA NA ENOG411E9F5 Q9FZ53 FDL4_ARATH Putative F-box/FBD/LRR-repeat protein At1g16940 50571 Putative F-box/FBD/LRR-repeat protein At1g16940 locus:2015571; AT1G16940 FBD NA NA NA NA NA NA NA ENOG411E9F6 UTR2,UTR4 Q29Q28,Q9LDX3 UTR2_ARATH,UTR4_ARATH UDP-galactose/UDP-glucose transporter 2 (AtUTr2),UDP-galactose/UDP-glucose transporter 4 (AtUTr4) FUNCTION: Sugar transporter involved in the transport of UDP-galactose form the cytoplasm into the Golgi apparatus. {ECO:0000269|PubMed:15891899}.,FUNCTION: Sugar transporter involved in the transport of nucleotide-sugars from cytoplasm into the Golgi and/or the endoplasmic reticulum. {ECO:0000250}. R-ATH-174362;R-ATH-727802; 38373,38944 UDP-galactose/UDP-glucose transporter 2 (AtUTr2),UDP-galactose/UDP-glucose transporter 4 (AtUTr4) integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of Golgi membrane [GO:0030173]; 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity [GO:0046964]; antiporter activity [GO:0015297]; UDP-galactose transmembrane transporter activity [GO:0005459]; UDP-galactose transmembrane transport [GO:0072334],integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of Golgi membrane [GO:0030173]; 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity [GO:0046964]; antiporter activity [GO:0015297]; carbohydrate transport [GO:0008643] TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in seedlings, shoots, leaves and flowers. {ECO:0000269|PubMed:15891899}. locus:2127163;,locus:2195032; AT4G23010,AT1G12600 UAA transporter family Os03g0118200 protein (UDP-galactose transporter, putative, expressed) (cDNA clone:001-035-H01, full insert sequence) (cDNA clone:006-304-G11, full insert sequence) Q10SL9 Q10SL9_ORYSJ Os03g0118200 LOC_Os03g02670 Os03g0118200 OSNPB_030118200 ENOG411E9F7 ALMT3 Q9LPQ8,A0A1P8AQE2 ALMT3_ARATH,A0A1P8AQE2_ARATH Putative aluminum-activated malate transporter 3 (AtALMT3),Aluminum activated malate transporter family protein FUNCTION: Malate transporter. {ECO:0000250}. 64911,55395 Putative aluminum-activated malate transporter 3 (AtALMT3),Aluminum activated malate transporter family protein integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; malate transmembrane transporter activity [GO:0015140],integral component of membrane [GO:0016021]; malate transport [GO:0015743] locus:2014119; AT1G18420 Fusaric acid resistance protein family NA NA NA NA NA NA NA ENOG411E9F8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411E9F9 T26J12.3 O49297 O49297_ARATH At1g23205 (F26F24.4) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (T26J12.3 protein) 22677 At1g23205 (F26F24.4) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (T26J12.3 protein) enzyme inhibitor activity [GO:0004857] locus:2825395; AT1G23205 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E9FA MGN6.10 Q9FI02,A8MRZ6,F4JYR8,F4JYT5,A8MR71 Q9FI02_ARATH,A8MRZ6_ARATH,F4JYR8_ARATH,F4JYT5_ARATH,A8MR71_ARATH Uncharacterized protein,Egg cell-secreted-like protein (DUF1278),Prolamin-like protein,Egg cell-secreted-like protein,ECA1 gametogenesis related family protein 30852,12575,18850,22329,12759 Uncharacterized protein,Egg cell-secreted-like protein (DUF1278),Prolamin-like protein,Egg cell-secreted-like protein,ECA1 gametogenesis related family protein locus:2164017;,locus:4010714052;,locus:504954984;,locus:504954909;,locus:4010714039; AT5G53740,AT5G53742,AT5G53905,AT5G54062,AT5G44495 Inherit from euNOG: ECA1 gametogenesis related family protein NA NA NA NA NA NA NA ENOG411E9FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_11 NA NA NA NA NA NA NA ENOG411E9FC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411E9FD MGO3.6,MGO3.7 Q9LVG6,Q9LVG5 Q9LVG6_ARATH,Q9LVG5_ARATH Protein kinase family protein (Protein kinase superfamily protein) (Serine/threonine protein kinase-like),Protein kinase superfamily protein (Similarity to protein kinase) R-ATH-446652; 41896,44981 Protein kinase family protein (Protein kinase superfamily protein) (Serine/threonine protein kinase-like),Protein kinase superfamily protein (Similarity to protein kinase) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2164150;,locus:2164155; AT5G60080,AT5G60090 kinase family NA NA NA NA NA NA NA ENOG411E9FE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os11g0570000 protein (Receptor kinase, putative, expressed) (cDNA clone:J023050J11, full insert sequence) Q2R2D3 Q2R2D3_ORYSJ Os11g0570000 LOC_Os11g36200 Os11g0570000 OSNPB_110570000 ENOG411E9FF Q9SGR2 Q9SGR2_ARATH T23E18.15 29904 T23E18.15 locus:2199742; AT1G76220 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E9FG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411E9FH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF300 NA NA NA NA NA NA NA ENOG411E9FI Q9SUG4,P0CG94,O49647,O49624,Q9FMT5,F4JUM4 FB241_ARATH,FB347_ARATH,FB246_ARATH,FB242_ARATH,FB256_ARATH,F4JUM4_ARATH Putative F-box protein At4g22170,Probable F-box protein At4g22165,Putative F-box protein At4g22660,Putative F-box protein At4g22180,Putative F-box protein At5g14160,F-box family protein-like protein 42908,42376,46375,46798,40302,30639 Putative F-box protein At4g22170,Probable F-box protein At4g22165,Putative F-box protein At4g22660,Putative F-box protein At4g22180,Putative F-box protein At5g14160,F-box family protein-like protein plasmodesma [GO:0009506] locus:2132021;,locus:505006507;,locus:2127595;,locus:2132035;,locus:2174723;,locus:504955428; AT4G22170,AT4G22165,AT4G22660,AT4G22180,AT5G14160,AT4G14165 Protein of unknown function (DUF295) F-box domain containing protein (Os11g0572000 protein) Q2R2B8 Q2R2B8_ORYSJ Os11g0572000 LOC_Os11g36350 OSNPB_110572000 ENOG411E9FJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_11 NA NA NA NA NA NA NA ENOG411E9FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like NA NA NA NA NA NA NA ENOG411E9FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411E9FP A0A1P8AZD7 A0A1P8AZD7_ARATH Uncharacterized protein 17725 Uncharacterized protein C2 domain NA NA NA NA NA NA NA ENOG411E9FQ GH3.12,PBS3 Q9LYU4,A0A1P8B9P8 GH312_ARATH,A0A1P8B9P8_ARATH 4-substituted benzoates-glutamate ligase GH3.12 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 12) (AtGH3-12) (Protein GH3-LIKE DEFENSE GENE 1) (Protein GRETCHEN HAGEN 3.12) (Protein HOPW1-1-INTERACTING 3) (Protein avrPPHB SUSCEPTIBLE 3),Auxin-responsive GH3 family protein DISRUPTION PHENOTYPE: Enhanced susceptibility to virulent and avirulent bacterial pathogens P.syringae pv. tomato and pv. maculicola ES4326 with or without DC3000(avrPphB, avrRpt2, avrB, avrRpm1, or avrRps4) as well as to the oomycete pathogen Hyaloperonospora parasitica (downy mildew) isolates Emoy2, Hind4, Hiks1, Wela3, Cand5, and Wand1. Impaired hyper-sensitive response (HR) and systemic acquired resistance (SAR). Compromised salicylic acid glucosides (SAG) accumulation. Resistance is partially rescued by SA treatment. {ECO:0000269|PubMed:10224270, ECO:0000269|PubMed:17468220, ECO:0000269|PubMed:17521413, ECO:0000269|PubMed:17918621}. Susceptible to avirulent bacteria-R. Innes-1999 FUNCTION: Catalyzes the conjugation of specific amino acids (e.g. Glu and possibly His, Lys, and Met) to their preferred acyl substrates (e.g. 4-substituted benzoates), in a magnesium ion- and ATP-dependent manner. Can use 4-substituted benzoates such as 4-aminobenzoate (pABA), 4-fluorobenzoate and 4-hydroxybenzoate (4-HBA), and, to a lesser extent, benzoate, vanillate and trans-cinnamate, but not 2-substituted benzoates and salicylic acid (SA), as conjugating acyl substrates. Involved in both basal and induced resistance in a SA-dependent manner. Confers resistance to virulent and avirulent pathogens (at least bacteria and oomycetes), and promotes SA glucosides accumulation. Required for the establishment of hyper-sensitive response (HR) upon incompatible interaction and subsequent systemic acquired resistance (SAR). {ECO:0000269|PubMed:10224270, ECO:0000269|PubMed:11846877, ECO:0000269|PubMed:16353557, ECO:0000269|PubMed:17468220, ECO:0000269|PubMed:17521413, ECO:0000269|PubMed:17918621, ECO:0000269|PubMed:18266921, ECO:0000269|PubMed:19189963}. ARA:AT5G13320-MONOMER;MetaCyc:AT5G13320-MONOMER; R-ATH-6798695; 6.3.2.- 65128,66902 4-substituted benzoates-glutamate ligase GH3.12 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 12) (AtGH3-12) (Protein GH3-LIKE DEFENSE GENE 1) (Protein GRETCHEN HAGEN 3.12) (Protein HOPW1-1-INTERACTING 3) (Protein avrPPHB SUSCEPTIBLE 3),Auxin-responsive GH3 family protein 4-aminobenzoate amino acid synthetase activity [GO:0052625]; 4-hydroxybenzoate amino acid synthetase activity [GO:0052628]; benzoate amino acid synthetase activity [GO:0052626]; vanillate amino acid synthetase activity [GO:0052627]; benzoate metabolic process [GO:0018874]; cellular response to hypoxia [GO:0071456]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; detection of fungus [GO:0016046]; interspecies interaction between organisms [GO:0044419]; plant-type hypersensitive response [GO:0009626]; positive regulation of plant-type hypersensitive response [GO:0034052]; regulation of systemic acquired resistance [GO:0010112]; salicylic acid mediated signaling pathway [GO:0009863] DEVELOPMENTAL STAGE: Observed in young plants. In flowers, first detected in flower buds at the beginning of the floral stage 13. In petals, levels fade out during flower maturation do disappear at floral opening. Present in sepals and to some extent in stamen and carpel. {ECO:0000269|PubMed:17521413}. TISSUE SPECIFICITY: Expressed in seedlings, mostly in cotyledons, leaves, hypocotyls and sporadically in roots. Not detected in unchallenged adult plants, except in flowers. {ECO:0000269|PubMed:17521413}. locus:6530584248; AT5G13320 pbs3 gdg1 win3 gh3.12 pbs3 (avrpphb susceptible 3) NA NA NA NA NA NA NA ENOG411E9FR NAS2,NAS1 Q9FKT9,Q9FF79 NAS2_ARATH,NAS1_ARATH Nicotianamine synthase 2 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 2) (AtNAS2),Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 1) (AtNAS1) FUNCTION: Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron. ARA:AT5G56080-MONOMER;,ARA:AT5G04950-MONOMER; 2.5.1.43; 2.5.1.43 35679,35547 Nicotianamine synthase 2 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 2) (AtNAS2),Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 1) (AtNAS1) nicotianamine synthase activity [GO:0030410]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; nicotianamine biosynthetic process [GO:0030418]; phloem transport [GO:0010233]; pollen development [GO:0009555]; pollen tube growth [GO:0009860]; response to zinc ion [GO:0010043],nicotianamine synthase activity [GO:0030410]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; nicotianamine biosynthetic process [GO:0030418]; phloem transport [GO:0010233]; pollen development [GO:0009555]; pollen tube growth [GO:0009860] TISSUE SPECIFICITY: In shoots and roots. locus:2161770;,locus:2175304; AT5G56080,AT5G04950 Nicotianamine synthase protein NA NA NA NA NA NA NA ENOG411E9FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411E9FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E9FV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0472300 protein A0A0N7KM39 A0A0N7KM39_ORYSJ Os06g0472300 OSNPB_060472300 ENOG411E9FW A0A1P8BFY8,A0A1P8BG18,A0A1P8BG20,A0A1P8BFZ2,F4K365,F4K366 A0A1P8BFY8_ARATH,A0A1P8BG18_ARATH,A0A1P8BG20_ARATH,A0A1P8BFZ2_ARATH,F4K365_ARATH,F4K366_ARATH Defense protein-like protein 33486,31630,35837,31853,28208,24969 Defense protein-like protein integral component of membrane [GO:0016021] locus:1006230531; AT5G48657 NA NA NA NA NA NA NA NA ENOG411E9FX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA NA NA NA NA NA NA NA ENOG411E9FY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class NA NA NA NA NA NA NA ENOG411E9FZ Q9SQR1 Q9SQR1_ARATH At3g04010 (O-Glycosyl hydrolases family 17 protein) (Putative beta-1,3-glucanase) ARA:AT3G04010-MONOMER; 54060 At3g04010 (O-Glycosyl hydrolases family 17 protein) (Putative beta-1,3-glucanase) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2095923; AT3G04010 family 17 NA NA NA NA NA NA NA ENOG411ED0A CKL13,CKL8,ckl8 Q5XF24,Q9LSX4,A0A1P8BBL3 CKL13_ARATH,CKL8_ARATH,A0A1P8BBL3_ARATH Casein kinase 1-like protein 13 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 13),Casein kinase 1-like protein 8 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 8),Casein kinase I-like 8 FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins. {ECO:0000250|UniProtKB:P48730}. 2.7.11.1 53205,54441,42732 Casein kinase 1-like protein 13 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 13),Casein kinase 1-like protein 8 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 8),Casein kinase I-like 8 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2018269;,locus:2176431; AT1G04440,AT5G43320 STYKc NA NA NA NA NA NA NA ENOG411ED0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED0K Q9LH38,A0A1I9LT28,F4J6P1 Q9LH38_ARATH,A0A1I9LT28_ARATH,F4J6P1_ARATH Uncharacterized protein 18716,28478,15173 Uncharacterized protein locus:2101753; AT3G30730 Domain of unknown function DUF223 NA NA NA NA NA NA NA ENOG411ED0J PCS1,PCS2,CAD1 Q9S7Z3,Q9ZWB7,A0A1P8AVJ0,A0A1P8BHA6,A0A1P8AVN4 PCS1_ARATH,PCS2_ARATH,A0A1P8AVJ0_ARATH,A0A1P8BHA6_ARATH,A0A1P8AVN4_ARATH Glutathione gamma-glutamylcysteinyltransferase 1 (EC 2.3.2.15) (Cadmium tolerance protein) (Phytochelatin synthase 1) (AtPCS1),Glutathione gamma-glutamylcysteinyltransferase 2 (EC 2.3.2.15) (Phytochelatin synthase 2) (AtPCS2),Phytochelatin synthase 2,Phytochelatin synthase 1 (PCS1) DISRUPTION PHENOTYPE: Plants are highly sensitive to Cd (20- to 40-fold) and AsO(4)(3-) ions, sensitive (eightfold) to Ag ions, slightly sensitive (twofold) to Cu and Hg ions, and insensitive to Zn, SeO(3)(2-) and Ni ions. {ECO:0000269|PubMed:17253989}. Exposure of seedlings to 50 ;M Cd2+ for 2 days does not induce phytochelatin biosynthesis.,When grown in the presence of inhibitory levels of cadmium growth is inhibited leaves become progressively chlorotic and the roots develop a distinct brown pigment.,Exposure of seedlings to 50 ;M Cd2+ for 2 days does phytochelatin biosynthesis as it does in wild type. Low phytochelatin levels; Sensitive to cadmium-C. Cobbett-1999 FUNCTION: Involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. Also involved in glutathione-conjugates degradation. {ECO:0000269|PubMed:12514032, ECO:0000269|PubMed:15004013, ECO:0000269|PubMed:16593801, ECO:0000269|PubMed:16594069, ECO:0000269|PubMed:17253989}.,FUNCTION: Involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. {ECO:0000269|PubMed:11684101, ECO:0000269|PubMed:15750344, ECO:0000269|PubMed:17253989}. MISCELLANEOUS: Homoglutathione (hGSH) is a good acceptor, but a poor donor, of gamma-glutamylcysteine units.,MISCELLANEOUS: Expression of PCS2 is too low to complement a PCS1-defective mutant. ARA:AT5G44070-MONOMER;MetaCyc:AT5G44070-MONOMER;,ARA:AT1G03980-MONOMER; 2.3.2.15; 2.3.2.15 54475,51551,43229,50594,54289 Glutathione gamma-glutamylcysteinyltransferase 1 (EC 2.3.2.15) (Cadmium tolerance protein) (Phytochelatin synthase 1) (AtPCS1),Glutathione gamma-glutamylcysteinyltransferase 2 (EC 2.3.2.15) (Phytochelatin synthase 2) (AtPCS2),Phytochelatin synthase 2,Phytochelatin synthase 1 (PCS1) cytosol [GO:0005829]; ATPase-coupled arsenite transmembrane transporter activity [GO:0015446]; cadmium ion binding [GO:0046870]; copper ion binding [GO:0005507]; glutathione gamma-glutamylcysteinyltransferase activity [GO:0016756]; phytochelatin transmembrane transporter activity [GO:0071992]; arsenite transport [GO:0015700]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; indole glucosinolate catabolic process [GO:0042344]; phytochelatin biosynthetic process [GO:0046938]; response to arsenic-containing substance [GO:0046685]; response to cadmium ion [GO:0046686],glutathione gamma-glutamylcysteinyltransferase activity [GO:0016756]; metal ion binding [GO:0046872]; phytochelatin biosynthetic process [GO:0046938]; response to metal ion [GO:0010038] DEVELOPMENTAL STAGE: Expressed constitutively. {ECO:0000269|PubMed:12172853}. TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:10368185, ECO:0000269|PubMed:10369673}.,TISSUE SPECIFICITY: Expressed in shoots, roots, leaves, stems and flowers. {ECO:0000269|PubMed:11684101}. locus:2172497;,locus:2024172; AT5G44070,AT1G03980 Phytochelatin synthase NA NA NA NA NA NA NA ENOG411ED0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411ED0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411ED0R ARI12 Q84RQ9,A0A1P8AVA0 ARI12_ARATH,A0A1P8AVA0_ARATH Probable E3 ubiquitin-protein ligase ARI12 (EC 2.3.2.-) (ARIADNE-like protein ARI12) (Protein ariadne homolog 12) (RING-type E3 ubiquitin transferase ARI12),RING/U-box superfamily protein FUNCTION: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. {ECO:0000250, ECO:0000269|PubMed:12446796}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664; 2.3.2.- 56495,54809 Probable E3 ubiquitin-protein ligase ARI12 (EC 2.3.2.-) (ARIADNE-like protein ARI12) (Protein ariadne homolog 12) (RING-type E3 ubiquitin transferase ARI12),RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; cellular response to hypoxia [GO:0071456]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to UV-B [GO:0010224],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Preferentially expressed in roots. {ECO:0000269|PubMed:12529512}. locus:2198718; AT1G05880 IBR domain NA NA NA NA NA NA NA ENOG411ED0Q KCS15 Q9SUY9,A0A1I9LR12 KCS15_ARATH,A0A1I9LR12_ARATH 3-ketoacyl-CoA synthase 15 (KCS-15) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 15) (VLCFA condensing enzyme 15),3-ketoacyl-CoA synthase 15 PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT3G52160-MONOMER; 2.3.1.199 51109,38085 3-ketoacyl-CoA synthase 15 (KCS-15) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 15) (VLCFA condensing enzyme 15),3-ketoacyl-CoA synthase 15 integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633],membrane [GO:0016020]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:18465198}. locus:2083825; AT3G52160 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411ED0P RH27 Q9SB89 RH27_ARATH DEAD-box ATP-dependent RNA helicase 27 (EC 3.6.4.13) 3.6.4.13 72053 DEAD-box ATP-dependent RNA helicase 27 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2152099; AT5G65900 DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411ED0W NAC032 Q9CAR0 NAC32_ARATH NAC transcription factor 32 (NAC domain-containing protein 32) (ANAC032) FUNCTION: Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. MISCELLANEOUS: Plants silencing NAC032 produce abnormally shaped seeds. {ECO:0000269|PubMed:18849494}. 28744 NAC transcription factor 32 (NAC domain-containing protein 32) (ANAC032) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of leaf senescence [GO:1900057]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in germinating seeds, roots, leaf veins, open flowers and silique stalks. {ECO:0000269|PubMed:27388337}. locus:2204685; AT1G77450 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411ED0U NRT2.6 Q9LXH0 NRT26_ARATH High affinity nitrate transporter 2.6 (AtNRT2:6) DISRUPTION PHENOTYPE: Loss of plant growth and root system architecture responses to the rhizospheric Phyllobacterium. {ECO:0000269|PubMed:23398541}. FUNCTION: Involved in high-affinity nitrate transport (PubMed:15107992). Required for the nitrate uptake-independent plant growth promotion and lateral root response to the rhizospheric Phyllobacterium (PubMed:23398541). {ECO:0000269|PubMed:15107992, ECO:0000269|PubMed:23398541}. 58637 High affinity nitrate transporter 2.6 (AtNRT2:6) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Expressed in roots and shoots (PubMed:12668777). Expressed in leaves (PubMed:23398541). {ECO:0000269|PubMed:12668777, ECO:0000269|PubMed:23398541}. locus:2075909; AT3G45060 Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411ED0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411ED0Y NIP2-1,NIP2:1 Q8W037,O82369,A0A1P8AYR6,A0A1P8AYX5,A0A1P8AYY0 NIP21_ARATH,O82369_ARATH,A0A1P8AYR6_ARATH,A0A1P8AYX5_ARATH,A0A1P8AYY0_ARATH Aquaporin NIP2-1 (NOD26-like intrinsic protein 2-1) (AtNIP2;1) (Nodulin-26-like major intrinsic protein 4) (NodLikeMip4) (Protein NLM4),Aquaporin-like superfamily protein (Putative aquaporin (Plasma membrane intrinsic protein)),NOD26-like intrinsic protein 21 FUNCTION: Low water transport activity in yeast cells. {ECO:0000269|PubMed:16954136}. 30581,14720,24572,26192,23064 Aquaporin NIP2-1 (NOD26-like intrinsic protein 2-1) (AtNIP2;1) (Nodulin-26-like major intrinsic protein 4) (NodLikeMip4) (Protein NLM4),Aquaporin-like superfamily protein (Putative aquaporin (Plasma membrane intrinsic protein)),NOD26-like intrinsic protein 21 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; lactate transmembrane transporter activity [GO:0015129]; water channel activity [GO:0015250]; lactate transport [GO:0015727]; response to hypoxia [GO:0001666],integral component of plasma membrane [GO:0005887]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Specifically expressed in roots with high expression in root elongation zone and root stele. {ECO:0000269|PubMed:16954136}. locus:2040904;,locus:2060649; AT2G34390,AT2G29870 NOD26-like intrinsic protein 2 NA NA NA NA NA NA NA ENOG411ED0X BHLH143 Q9FY69 BH143_ARATH Transcription factor bHLH143 (Basic helix-loop-helix protein 143) (AtbHLH143) (bHLH 143) (Transcription factor EN 129) (bHLH transcription factor bHLH143) 36444 Transcription factor bHLH143 (Basic helix-loop-helix protein 143) (AtbHLH143) (bHLH 143) (Transcription factor EN 129) (bHLH transcription factor bHLH143) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2184822; AT5G09460 Transcription factor NA NA NA NA NA NA NA ENOG411ED03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NACHT domain Os11g0615900 protein (Fragment) Q0IRM2 Q0IRM2_ORYSJ Os11g0615900 OSNPB_110615900 ENOG411ED01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411ED00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Ac Serine/threonine-protein phosphatase PP1 (EC 3.1.3.16),Os03g0268000 protein (Fragment) P48489,A0A0P0VVV2 PP1_ORYSJ,A0A0P0VVV2_ORYSJ Os03g0268000 LOC_Os03g16110 OJ1364E02.17 OJA1364E02.7,Os03g0268000 OSNPB_030268000 ENOG411ED07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411ED06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain OSJNBb0060M15.6 protein (Os04g0111900 protein) Q7XQC5 Q7XQC5_ORYSJ Os04g0111900 Os04g0111900 OSJNBb0060M15.6 OSNPB_040111900 ENOG411ED05 Q9LSF2 Q9LSF2_ARATH Sulfate/thiosulfate import ATP-binding protein, putative (DUF506) 31631 Sulfate/thiosulfate import ATP-binding protein, putative (DUF506) ATP binding [GO:0005524] locus:2090295; AT3G25240 Protein of unknown function (DUF506) NA NA NA NA NA NA NA ENOG411ED09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc knuckle (CCHC-type) family protein NA NA NA NA NA NA NA ENOG411ED08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Predicted membrane protein NA NA NA NA NA NA NA ENOG411E0SW Q8RWG5 Q8RWG5_ARATH At2g16630 (Pollen Ole e 1 allergen and extensin family protein) (Uncharacterized protein At2g16630) 38810 At2g16630 (Pollen Ole e 1 allergen and extensin family protein) (Uncharacterized protein At2g16630) locus:2059914; AT2G16630 Pollen proteins Ole e I like Os02g0101900 protein (Fragment),Os05g0346700 protein A0A0P0VDM4,A0A0P0WLB0 A0A0P0VDM4_ORYSJ,A0A0P0WLB0_ORYSJ Os02g0101900 OSNPB_020101900,Os05g0346700 OSNPB_050346700 ENOG411EFWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFWV Q1PDJ2 Q1PDJ2_ARATH Uncharacterized protein 12202 Uncharacterized protein locus:504954950; AT5G55135 NA NA NA NA NA NA NA NA ENOG411EFWW SMR10 Q9ZV27 SMR10_ARATH Cyclin-dependent protein kinase inhibitor SMR10 (Protein SIAMESE-RELATED 10) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250|UniProtKB:Q9LZ78}. 17928 Cyclin-dependent protein kinase inhibitor SMR10 (Protein SIAMESE-RELATED 10) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:2053245; AT2G28870 NA NA NA NA NA NA NA NA ENOG411EFWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFWQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TspO/MBR family NA NA NA NA NA NA NA ENOG411EFWR Q3E922 Y5680_ARATH B3 domain-containing protein At5g26805 18769 B3 domain-containing protein At5g26805 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:1006230475; AT5G26805 NA NA NA NA NA NA NA NA ENOG411EFWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear-like sequence Q8HCP3 Q8HCP3_ORYSJ orf187 ENOG411EFWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EFWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EFWD A0JQ68,Q6NMD9 A0JQ68_ARATH,Q6NMD9_ARATH At1g70990 (Proline-rich family protein),At1g02405 (Proline-rich family protein) (Uncharacterized protein At1g02405) 19377,14196 At1g70990 (Proline-rich family protein),At1g02405 (Proline-rich family protein) (Uncharacterized protein At1g02405) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2014010;,locus:504956113; AT1G70990,AT1G02405 NA NA NA NA NA NA NA NA ENOG411EFWE BZIP8 Q9CA46 BZIP8_ARATH Basic leucine zipper 8 (AtbZIP8) (bZIP protein 8) 16245 Basic leucine zipper 8 (AtbZIP8) (bZIP protein 8) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2012413; AT1G68880 Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EFWF AtXYP13 Q2PE60 Q2PE60_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Xylogen like protein 13) 25907 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Xylogen like protein 13) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2034325; AT1G36150 AAI NA NA NA NA NA NA NA ENOG411EFWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EFWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0356951 protein (Os01g0357000 protein) Q5ZBK5 Q5ZBK5_ORYSJ Os01g0356951 Os01g0357000 OSNPB_010356951 P0025H06.18 ENOG411EFWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EFWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411EFWN RAB18 P30185,F4K0K7 DHR18_ARATH,F4K0K7_ARATH Dehydrin Rab18,Dehydrin family protein 18464,18335 Dehydrin Rab18,Dehydrin family protein cytosol [GO:0005829]; copper ion binding [GO:0005507]; nickel cation binding [GO:0016151]; cold acclimation [GO:0009631]; response to 1-aminocyclopropane-1-carboxylic acid [GO:0009961]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414],response to stress [GO:0006950]; response to water [GO:0009415] locus:2154930; AT5G66400 Dehydrin NA NA NA NA NA NA NA ENOG411EFWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14 kDa proline-rich protein DC2.15-like NA NA NA NA NA NA NA ENOG411EFWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XPGN NA NA NA NA NA NA NA ENOG411EFWK MGN6.5 Q9LZD9,Q5BPG8,Q67YA0,A0A1P8BBH0,F4IZU8,A0A1P8BFZ0,F4JZB9,A0A1P8BBD7 Q9LZD9_ARATH,Q5BPG8_ARATH,Q67YA0_ARATH,A0A1P8BBH0_ARATH,F4IZU8_ARATH,A0A1P8BFZ0_ARATH,F4JZB9_ARATH,A0A1P8BBD7_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein F12E4_250),RNA-binding (RRM/RBD/RNP motifs) family protein,RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At5g03500),RNA-binding protein 35799,27677,24985,21953,14747,24660,17844,17222 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein F12E4_250),RNA-binding (RRM/RBD/RNP motifs) family protein,RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At5g03500),RNA-binding protein nucleus [GO:0005634]; RNA binding [GO:0003723],nucleic acid binding [GO:0003676],RNA binding [GO:0003723] locus:2142634;,locus:2164062;,locus:4010713942;,locus:2083514;,locus:2153534; AT5G03480,AT5G53700,AT5G03495,AT3G09160,AT5G05430 Inherit from KOG: ubiquitin carboxyl-terminal hydrolase NA NA NA NA NA NA NA ENOG411EFW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipid methyltransferase NA NA NA NA NA NA NA ENOG411EFW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0307600 protein),Os05g0448000 protein,Os01g0849900 protein,Os04g0641600 protein,Os02g0622900 protein,Os01g0295000 protein,Os07g0504300 protein,Os04g0354300 protein,Os07g0504350 protein Q2R6F5,A0A0N7KKV9,A0A0P0VAA8,A0A0P0WFR8,A0A0P0VM85,A0A0P0V1F8,A0A0P0X6G6,A0A0P0W925,A0A0P0X6U4 Q2R6F5_ORYSJ,A0A0N7KKV9_ORYSJ,A0A0P0VAA8_ORYSJ,A0A0P0WFR8_ORYSJ,A0A0P0VM85_ORYSJ,A0A0P0V1F8_ORYSJ,A0A0P0X6G6_ORYSJ,A0A0P0W925_ORYSJ,A0A0P0X6U4_ORYSJ Os11g0307600 LOC_Os11g20239 Os11g0307600 OSNPB_110307600,Os05g0448000 OSNPB_050448000,Os01g0849900 OSNPB_010849900,Os04g0641600 OSNPB_040641600,Os02g0622900 OSNPB_020622900,Os01g0295000 OSNPB_010295000,Os07g0504300 OSNPB_070504300,Os04g0354300 OSNPB_040354300,Os07g0504350 OSNPB_070504350 ENOG411EFW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411EFW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0465000 protein,Expressed protein (Os12g0465100 protein),Os12g0465200 protein,Os12g0464600 protein Q2QRD6,Q2QRD5,Q2QRD4,A0A0P0Y9Z7 Q2QRD6_ORYSJ,Q2QRD5_ORYSJ,Q2QRD4_ORYSJ,A0A0P0Y9Z7_ORYSJ Os12g0465000 LOC_Os12g27930 OsJ_36033 OSNPB_120465000,LOC_Os12g27940 Os12g0465100 OsJ_36034 OSNPB_120465100,Os12g0465200 LOC_Os12g27950 OsJ_36035 OSNPB_120465200,Os12g0464600 OSNPB_120464600 ENOG411EFW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAB NA NA NA NA NA NA NA ENOG411EFW1 MNL12.2,F18P9_100 Q9FHS5,Q9M1L1,Q9ZQ22,Q9ZQ20,Q9LJJ3,A0A1P8AZY5,F4IPM1 Q9FHS5_ARATH,Q9M1L1_ARATH,Q9ZQ22_ARATH,Q9ZQ20_ARATH,Q9LJJ3_ARATH,A0A1P8AZY5_ARATH,F4IPM1_ARATH Gb|AAD18119.1 (Zinc finger, C3HC4 type (RING finger) family protein),C3HC4-type RING finger protein (Uncharacterized protein F18P9_100),C3HC4-type RING finger protein (Uncharacterized protein At2g24460) (Uncharacterized protein T28I24.19),Uncharacterized protein At2g24480 (Zinc finger, C3HC4 type (RING finger) family protein),Zinc finger, C3HC4 type (RING finger) family protein 23422,21990,16864,22594,24465,12604,12014 Gb|AAD18119.1 (Zinc finger, C3HC4 type (RING finger) family protein),C3HC4-type RING finger protein (Uncharacterized protein F18P9_100),C3HC4-type RING finger protein (Uncharacterized protein At2g24460) (Uncharacterized protein T28I24.19),Uncharacterized protein At2g24480 (Zinc finger, C3HC4 type (RING finger) family protein),Zinc finger, C3HC4 type (RING finger) family protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2169263;,locus:2078521;,locus:2061017;,locus:2061057;,locus:2095542;,locus:504955943; AT5G43200,AT3G42940,AT2G24460,AT2G24480,AT3G28620,AT2G24285 Zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EFW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ankyrin Repeat NA NA NA NA NA NA NA ENOG411EFW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os11g0426400 protein,Basic blue copper protein (Os11g0428800 protein) (Plastocyanin-like domain containing protein, expressed) (cDNA, clone: J100087F13, full insert sequence) Q0IT23,Q53MV1 Q0IT23_ORYSJ,Q53MV1_ORYSJ Os11g0426400 Os11g0426400 OsJ_12016 OSNPB_110426400,LOC_Os11g24140 Os11g0428800 OsJ_33756 OSNPB_110428800 ENOG411E14B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Is associated with a DNA binding complex that binds to the G box a well-characterized cis-acting DNA regulatory element found in plant genes (By similarity) 14-3-3-like protein GF14-A (G-box factor 14-3-3 homolog A) Q84J55 14331_ORYSJ GF14A Os08g0480800 LOC_Os08g37490 OJ1113_A10.40 OSJNBb0092C08.10 FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. {ECO:0000250}. ENOG411E14J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E14K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) Os04g0675000 protein,Os08g0100600 protein (Fragment) B9FDA0,Q0J8P7 B9FDA0_ORYSJ,Q0J8P7_ORYSJ Os04g0675000 OsJ_16606 OSNPB_040675000,Os08g0100600 Os08g0100600 OSNPB_080100600 ENOG411E14H T20H2.2 A0JQ12,Q8W456,A0A1P8AMK3,A0A1P8AMI0 A0JQ12_ARATH,Q8W456_ARATH,A0A1P8AMK3_ARATH,A0A1P8AMI0_ARATH At1g76020 (Thioredoxin superfamily protein),Thioredoxin superfamily protein (Uncharacterized protein At1g20220) (Uncharacterized protein At1g20220; T20H2.2),Thioredoxin superfamily protein 25255,26052,20267,19998 At1g76020 (Thioredoxin superfamily protein),Thioredoxin superfamily protein (Uncharacterized protein At1g20220) (Uncharacterized protein At1g20220; T20H2.2),Thioredoxin superfamily protein cell wall [GO:0005618]; vacuole [GO:0005773],cytosol [GO:0005829]; vacuole [GO:0005773] locus:2204415;,locus:504956159; AT1G76020,AT1G20225 Inherit from KOG: ribonuclease P MRP 25kDa Os09g0542200 protein (cDNA clone:001-040-C11, full insert sequence) (cDNA clone:J013000K12, full insert sequence),OSJNBb0015G09.12 protein (OSJNBb0071D01.2 protein) (Os04g0227500 protein) (cDNA clone:006-305-A07, full insert sequence) (cDNA clone:006-307-A06, full insert sequence) Q651C1,Q7XNV4 Q651C1_ORYSJ,Q7XNV4_ORYSJ Os09g0542200 B1274F11.44 OSNPB_090542200,Os04g0227500 OsJ_13476 OSJNBb0015G09.12 OSJNBb0071D01.2 OSNPB_040227500 ENOG411E14I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FtsH Extracellular ATP-dependent zinc metalloprotease FTSH 8, mitochondrial (OsFTSH8) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 3, mitochondrial (OsFTSH3) (EC 3.4.24.-) Q0DHL4,Q8S2A7 FTSH8_ORYSJ,FTSH3_ORYSJ FTSH8 Os05g0458400 LOC_Os05g38400 OJ1362_D02.8 OsJ_018045,FTSH3 Os01g0842600 LOC_Os01g62500 OsJ_003942 P0406G08.15 FUNCTION: Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. ENOG411E14M Q9LV18,A0A1I9LLB8 Q9LV18_ARATH,A0A1I9LLB8_ARATH Uncharacterized protein At3g18215,Uncharacterized protein 27640,19380 Uncharacterized protein At3g18215,Uncharacterized protein integral component of membrane [GO:0016021] locus:505006357; AT3G18215 Protein of unknown function DUF599 Os01g0683700 protein Q5N7N9 Q5N7N9_ORYSJ Os01g0683700 Os01g0683700 OSNPB_010683700 P0445E10.13 P0478H03.3 ENOG411E14R MAC12.15 Q9FFY4 Q9FFY4_ARATH At5g13890 (Gb|AAD43171.1) (Plant viral-response family protein (DUF716)) (Uncharacterized protein At5g13890) 33924 At5g13890 (Gb|AAD43171.1) (Plant viral-response family protein (DUF716)) (Uncharacterized protein At5g13890) integral component of membrane [GO:0016021] locus:2159043; AT5G13890 Family of unknown function (DUF716) Os11g0534100 protein Q2R368 Q2R368_ORYSJ Os11g0534100 LOC_Os11g32950 OsJ_34127 OSNPB_110534100 ENOG411E14S SRO1 O82289,A0A1P8AY19 SRO1_ARATH,A0A1P8AY19_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 (Protein SIMILAR TO RCD ONE 1),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. {ECO:0000269|PubMed:19548978, ECO:0000269|PubMed:20009514, ECO:0000269|PubMed:21172813}. Long roots; Increased lateral root number; Late flowering; Resistant to oxidative and osmotic stress-R. Lamb-2009 FUNCTION: Probable inactive ADP-ribosyltransferase that functions with RCD1 to regulate oxidative stress, hormonal and developmental responses. May regulate some stress-responsive genes. Seems to play a smaller developmental role than R. {ECO:0000269|PubMed:19548978, ECO:0000269|PubMed:19625634, ECO:0000269|PubMed:21172813}. 2.4.2.30 64137,52422 Probable inactive poly [ADP-ribose] polymerase SRO1 (Protein SIMILAR TO RCD ONE 1),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) nuclear matrix [GO:0016363]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; embryo development ending in seed dormancy [GO:0009793]; lateral root morphogenesis [GO:0010102]; photoperiodism, flowering [GO:0048573]; response to osmotic stress [GO:0006970]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651],NAD+ ADP-ribosyltransferase activity [GO:0003950] DEVELOPMENTAL STAGE: Expressed in the embryo proper at the globular stage. Expressed in the embryo until the torpedo stage, after which expression within the procambial strands becomes pronounced. {ECO:0000269|PubMed:21172813}. TISSUE SPECIFICITY: Expressed in young developing tissues, such as young leaves and flowers and root tips. In mature plants, expressed in vasculature of leaves and roots. {ECO:0000269|PubMed:19548978, ECO:0000269|PubMed:19625634, ECO:0000269|PubMed:21172813}. locus:2062471; AT2G35510 RCD1-SRO-TAF4 (RST) plant domain Os03g0854800 protein (Poly polymerase catalytic domain containing protein, expressed) (Putative CEO protein (Alternative splicing products)),Os03g0854800 protein Q84T80,A0A0P0W5M2 Q84T80_ORYSJ,A0A0P0W5M2_ORYSJ Os03g0854800 LOC_Os03g63770 Os03g63770 OSNPB_030854800,Os03g0854800 OSNPB_030854800 ENOG411E14P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acid phosphatase Os06g0559500 protein (Putative Acid phosphatase 1) (cDNA clone:006-308-D10, full insert sequence) (cDNA clone:J023014B19, full insert sequence) Q5Z7F8 Q5Z7F8_ORYSJ Os06g0559500 OSJNBa0090E14.35 OSNPB_060559500 P0528E12.6 ENOG411E14Q F4JRF6 F4JRF6_ARATH RPA-interacting protein A 30137 RPA-interacting protein A locus:2135753; AT4G12760 NA Os05g0417300 protein (cDNA clone:001-129-A08, full insert sequence) (cDNA clone:J033011P22, full insert sequence) Q6AT70 Q6AT70_ORYSJ Os05g0417300 Os05g0417300 OsJ_18563 OSJNBa0084P24.18 OSNPB_050417300 P0579A05.4 ENOG411E14V VASCULAR-RELATED NAC-DOMAIN 6 Q9FHC2 Q9FHC2_ARATH At5g52380 (VASCULAR-RELATED NAC-DOMAIN 6) Regulation of actin cytoskeleton (04810),Fc gamma R-mediated phagocytosis (04666),Axon guidance (04360),Pertussis (05133) 30038 At5g52380 (VASCULAR-RELATED NAC-DOMAIN 6) nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2156647; AT5G52380 Zinc knuckle Os04g0555800 protein (cDNA clone:002-172-B08, full insert sequence) B7F357 B7F357_ORYSJ Os04g0555800 OSNPB_040555800 ENOG411E14T F3A4.110 Q9SN15 Q9SN15_ARATH ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (Uncharacterized protein F3A4.110) 57331 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (Uncharacterized protein F3A4.110) locus:2083068; AT3G50030 NA NA NA NA NA NA NA NA ENOG411E14Z WOX1 Q6X7K0 WOX1_ARATH WUSCHEL-related homeobox 1 (PFS2-like protein) FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. 40143 WUSCHEL-related homeobox 1 (PFS2-like protein) cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant organ development [GO:0099402]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}. locus:2088550; AT3G18010 WUSCHEL-related homeobox 1-like NA NA NA NA NA NA NA ENOG411E14X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PUB domain Os08g0526700 protein A0A0P0XI76 A0A0P0XI76_ORYSJ Os08g0526700 OSNPB_080526700 ENOG411E14Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0628700 protein (cDNA, clone: J100002I07, full insert sequence) B7F9W3 B7F9W3_ORYSJ Os01g0628700 OSNPB_010628700 ENOG411E142 YUP8H12R.45 A0A1P8AMZ9,F4IDG3,F4IDG2 A0A1P8AMZ9_ARATH,F4IDG3_ARATH,F4IDG2_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 83585,75933,84187 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672] locus:2207325; AT1G78940 Universal stress protein family NA NA NA NA NA NA NA ENOG411E143 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:NPD Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 (EC 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (OsGLO2) (Short chain alpha-hydroxy acid oxidase GLO2),Os04g0623600 protein (Fragment) Q7XPR4,A0A0P0WEX1 GLO2_ORYSJ,A0A0P0WEX1_ORYSJ GLO2 Os04g0623600 LOC_Os04g53214 OsJ_16218 OSJNBa0053K19.9,Os04g0623600 OSNPB_040623600 FUNCTION: Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation (By similarity). {ECO:0000250}. ENOG411E140 Q6DBN3,F4J8D6,F4J8D7 Q6DBN3_ARATH,F4J8D6_ARATH,F4J8D7_ARATH At3g57360 (tRNA-splicing endonuclease subunit),tRNA-splicing endonuclease subunit 28107,23087,18185 At3g57360 (tRNA-splicing endonuclease subunit),tRNA-splicing endonuclease subunit tRNA-intron endonuclease complex [GO:0000214]; endonuclease activity [GO:0004519]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; tRNA-type intron splice site recognition and cleavage [GO:0000379],endonuclease activity [GO:0004519] locus:2082553;,locus:2074582; AT3G57360,AT3G02370 Inherit from KOG: tRNA splicing endonuclease 54 homolog (S. cerevisiae) Os09g0504800 protein (cDNA clone:J033023G15, full insert sequence) Q0J0N0 Q0J0N0_ORYSJ Os09g0504800 Os09g0504800 OsJ_29924 OSNPB_090504800 ENOG411E141 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein heavy chain and region D6 of dynein motor NA NA NA NA NA NA NA ENOG411E146 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear pore complex protein NA NA NA NA NA NA NA ENOG411E147 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B561 Os10g0118800 protein (Fragment),Os10g0118350 protein A0A0P0XR06,A0A0P0XR61 A0A0P0XR06_ORYSJ,A0A0P0XR61_ORYSJ Os10g0118800 OSNPB_100118800,Os10g0118350 OSNPB_100118350 ENOG411E144 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E145 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B12 (Beta-expansin-12) (OsEXPB12) (OsaEXPb1.17),Os03g0645000 protein (Fragment) Q10G40,A0A0P0W1J4 EXB12_ORYSJ,A0A0P0W1J4_ORYSJ EXPB12 Os03g0645000 LOC_Os03g44290,Os03g0645000 OSNPB_030645000 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E148 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os06g0549600 protein (Putative CPRD2) (cDNA clone:J033046H14, full insert sequence) Q5Z957 Q5Z957_ORYSJ Os06g0549600 Os06g0549600 OsJ_21638 OSNPB_060549600 P0659D09.11 ENOG411E149 MCA1,MCA2 Q8L7E9,Q3EBY6,A0A1P8AZD6 MCAC1_ARATH,MCAC2_ARATH,A0A1P8AZD6_ARATH Protein MID1-COMPLEMENTING ACTIVITY 1,Protein MID1-COMPLEMENTING ACTIVITY 2,PLAC8 family protein DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions; due to partial redundancy with MCA2. The roots are unable to sense a change in the hardness of the growth medium. Mca1 and mca2 double mutant shows a strong growth defect. {ECO:0000269|PubMed:17360695, ECO:0000269|PubMed:20097794}.,DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions, due to redundancy with MCA1. The roots are able to normally sense the hardness of the growth medium. Mca1 and mca2 double mutant shows a strong growth defect. {ECO:0000269|PubMed:20097794}. primary roots failed to penetrate a harder agar medium from a softer medium. Abnormal root thigmotropism-H. Iida-2007 FUNCTION: Calcium-permeable stretch-activated channel component. Involved in mechano-stimulated calcium uptake mechanism and in mechanosensing in the primary root. {ECO:0000269|PubMed:17360695, ECO:0000269|PubMed:20097794}.,FUNCTION: Calcium-permeable stretch-activated channel component. Probably involved in mechanosensing and in mechano-stimulated calcium uptake mechanism. {ECO:0000269|PubMed:20097794}. 48037,47414,44158 Protein MID1-COMPLEMENTING ACTIVITY 1,Protein MID1-COMPLEMENTING ACTIVITY 2,PLAC8 family protein integral component of plasma membrane [GO:0005887]; calcium channel activity [GO:0005262]; calcium ion transport [GO:0006816]; carbohydrate homeostasis [GO:0033500]; mechanosensory behavior [GO:0007638]; osmosensory signaling pathway [GO:0007231],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; post-embryonic root development [GO:0048528] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Expressed in vascular tissues of cotyledons, leaves and primary root, in the promeristem and adjacent elongation zone of the primary root and in the shoot apical meristem. Detected in the stele and endodermis, but not in the cortex, epidermis or root cap, including the columella. Not expressed in root hairs or in mesophyll cells of leaves and cotyledons. {ECO:0000269|PubMed:17360695, ECO:0000269|PubMed:20097794}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. In the root, high levels of expression in vascular tissues, in the stele and endodermis, but no expression in the cortex, epidermis, root cap, promeristem and adjacent elongation zone of the primary root. Not expressed in root hairs. Detected in shoot apical meristem, leaf mesophyll cells and vascular tissues, upper half of inflorescence, but not in petioles of rosette leaves. {ECO:0000269|PubMed:20097794}. locus:2125369;,locus:2827953; AT4G35920,AT2G17780 Mid1-complementing activity Mid1-complementing activity 1 (Os03g0157300 protein) Q10RJ5 Q10RJ5_ORYSJ OsMCA1 LOC_Os03g06120 Os03g0157300 OSNPB_030157300 ENOG411E6SJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0607100 protein,Os11g0545650 protein A0A0P0V516,A0A0P0Y348 A0A0P0V516_ORYSJ,A0A0P0Y348_ORYSJ Os01g0607100 OSNPB_010607100,Os11g0545650 OSNPB_110545650 ENOG411E6SM SAUR46,SAUR57 Q9SJK4,A0A1I9LQF0,A0A178VC16 Q9SJK4_ARATH,A0A1I9LQF0_ARATH,A0A178VC16_ARATH Auxin-responsive family protein (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family 14187,17791,14182 Auxin-responsive family protein (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family response to auxin [GO:0009733] locus:2057971; AT2G37030,AT3G53250 Auxin-responsive family OSJNBa0073E02.12 protein (Os04g0517900 protein) (cDNA, clone: J065141A04, full insert sequence) Q7X7G3 Q7X7G3_ORYSJ Os04g0517900 OSJNBa0073E02.12 OSNPB_040517900 ENOG411E6SZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0184300 protein Q2QWS8 Q2QWS8_ORYSJ Os12g0184300 LOC_Os12g08340 OsJ_35455 OSNPB_120184300 ENOG411E6SQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0142500 protein (Fragment),Os08g0142900 protein C7J689,Q6YYZ5 C7J689_ORYSJ,Q6YYZ5_ORYSJ Os08g0142500 Os08g0142500 OSNPB_080142500,Os08g0142900 Os08g0142900 OSNPB_080142900 P0025F03.12 P0473D02.34 ENOG411E6SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor NA NA NA NA NA NA NA ENOG411E6ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411EB67 A0A1P8AUJ8,A0A1P8AUN7,Q3ED83 A0A1P8AUJ8_ARATH,A0A1P8AUN7_ARATH,Q3ED83_ARATH Mitochondrial transcription termination factor family protein 51549,40245,44290 Mitochondrial transcription termination factor family protein double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355],chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2199612; AT1G21150 mTERF NA NA NA NA NA NA NA ENOG411EB66 Q8L956 Q8L956_ARATH Syringolide-induced protein 26586 Syringolide-induced protein locus:2012948; AT1G20310 NA NA NA NA NA NA NA NA ENOG411EB65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Enoyl-CoA hydratase/isomerase family NA NA NA NA NA NA NA ENOG411EB64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Adenylate kinase NA NA NA NA NA NA NA ENOG411EB63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prenyltransferase and squalene oxidase repeat Achilleol B synthase (EC 5.4.99.48),Os06g0483200 protein Q2R712,A0A0P0WX55 ACBSY_ORYSJ,A0A0P0WX55_ORYSJ Os11g0285000 LOC_Os11g18194,Os06g0483200 OSNPB_060483200 FUNCTION: Specifically mediates the conversion of oxidosqualene ((3S)-2,3-epoxy-2,3-dihydrosqualene) to achilleol B. Achilleol B is probably formed by cleavage of the 8-14 and 9-10 bonds of (3S)-2,3-epoxy-2,3-dihydrosqualene as part of the cyclization reaction, after formation of the oleanane skeleton. {ECO:0000269|PubMed:21526825}. ENOG411EB61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EB6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase D C terminal NA NA NA NA NA NA NA ENOG411EB6F Q9LJJ5,F4J0C0,F4KFX5,A0A1I9LN06 AATPB_ARATH,AATPA_ARATH,AATPJ_ARATH,A0A1I9LN06_ARATH AAA-ATPase At3g28610 (EC 3.6.1.3),AAA-ATPase At3g28600 (EC 3.6.1.3),AAA-ATPase At5g40000 (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein 3.6.1.3 54798,54872,54095,50067 AAA-ATPase At3g28610 (EC 3.6.1.3),AAA-ATPase At3g28600 (EC 3.6.1.3),AAA-ATPase At5g40000 (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; ATPase activity [GO:0016887]; response to salt stress [GO:0009651],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2095537;,locus:2095532;,locus:2178057; AT3G28610,AT3G28600,AT5G40000 AAA-type ATPase family protein NA NA NA NA NA NA NA ENOG411EB6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EB6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SelR domain NA NA NA NA NA NA NA ENOG411EB6C Q9LRM5,Q944R1,F4JTS3 PLY9_ARATH,PLY15_ARATH,F4JTS3_ARATH Probable pectate lyase 9 (EC 4.2.2.2),Probable pectate lyase 15 (EC 4.2.2.2) (Pectate lyase A11),Pectate lyase (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. ARA:AT3G24230-MONOMER;,ARA:AT4G13710-MONOMER; 4.2.2.2 49985,51936,49889 Probable pectate lyase 9 (EC 4.2.2.2),Probable pectate lyase 15 (EC 4.2.2.2) (Pectate lyase A11),Pectate lyase (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed in flowers, but not in leaves. {ECO:0000269|PubMed:9278171}. locus:2093761;,locus:2005487; AT3G24230,AT4G13710 Pectate lyase NA NA NA NA NA NA NA ENOG411EB6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated region NA NA NA NA NA NA NA ENOG411EB6A CML26 Q9C9U8 CML26_ARATH Probable calcium-binding protein CML26 (Calmodulin-like protein 26) FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 18002 Probable calcium-binding protein CML26 (Calmodulin-like protein 26) cytoplasm [GO:0005737]; calcium ion binding [GO:0005509] locus:2027869; AT1G73630 Pfam:efhand NA NA NA NA NA NA NA ENOG411EB6N Q9LTQ5,Q9LTQ4,A0A1I9LRA3 Q9LTQ5_ARATH,Q9LTQ4_ARATH,A0A1I9LRA3_ARATH AT3g20370/MQC12_13 (TRAF-like family protein),TRAF-like family protein (Uncharacterized protein At3g20380),TRAF-like family protein 43449,43158,41105 AT3g20370/MQC12_13 (TRAF-like family protein),TRAF-like family protein (Uncharacterized protein At3g20380),TRAF-like family protein membrane [GO:0016020]; plasmodesma [GO:0009506] locus:2092344;,locus:2092359; AT3G20370,AT3G20380 MATH domain NA NA NA NA NA NA NA ENOG411EB6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR NA NA NA NA NA NA NA ENOG411EB6K AER,P2 Q39172,Q39173,Q93Z72,Q9LTB4,Q9FKC9,Q9FKD2,Q9M9M7,Q9LFK5,Q9C677,A0A1P8BD40,A0A1P8BEE4,A0A1P8BD56,F4K8P3,F4IE59 AER_ARATH,P2_ARATH,Q93Z72_ARATH,Q9LTB4_ARATH,Q9FKC9_ARATH,Q9FKD2_ARATH,Q9M9M7_ARATH,Q9LFK5_ARATH,Q9C677_ARATH,A0A1P8BD40_ARATH,A0A1P8BEE4_ARATH,A0A1P8BD56_ARATH,F4K8P3_ARATH,F4IE59_ARATH NADPH-dependent oxidoreductase 2-alkenal reductase (AtAER) (EC 1.3.1.-) (EC 1.3.1.74) (NADP-dependent alkenal double bond reductase P1) (DBR1) (NADPH-azodicarbonyl/quinone reductase) (NADPH:2-alkenal/one alpha,beta-hydrogenase) (ALH) (P1-zeta-crystallin protein) (P1-ZCr),NADP-dependent alkenal double bond reductase P2 (EC 1.3.1.74),AT5g16970/F2K13_120 (Putative quinone oxidoreductase) (Zinc-binding dehydrogenase family protein),At5g38000 (NADP-dependent oxidoreductase-like) (Oxidoreductase like protein) (Zinc-binding dehydrogenase family protein),Allyl alcohol dehydrogenase; NADP-dependent oxidoreductase-like protein (Zinc-binding dehydrogenase family protein),Allyl alcohol dehydrogenase; NADP-dependent oxidoreductase-like protein (At5g37940/K18L3_100) (Zinc-binding dehydrogenase family protein),Putative NADP-dependent oxidoreductase (Zinc-binding dehydrogenase family protein),Quinone oxidoreductase-like protein (Zinc-binding dehydrogenase family protein),Allyl alcohol dehydrogenase, putative (Putative allyl alcohol dehydrogenase) (Zinc-binding dehydrogenase family protein),Zinc-binding dehydrogenase family protein,GroES-like family protein FUNCTION: Involved in the detoxification of reactive carbonyls (PubMed:10848984, PubMed:12514241, PubMed:16299173). Acts on lipid peroxide-derived reactive aldehydes (PubMed:12514241). Specific to a double bond activated by an adjacent carbonyl group (PubMed:12514241). Can use both quinones and diamide as substrates, but not menadione, ferricyanide or phylloquinone (PubMed:10848984). Can use 4-hydroxy-(2E)-nonenal (HNE), 4-hydroxy-(2E)-hexenal (HHE), (2E)-nonenal, (2E)-hexenal, (2E)-pentenal, propenal (acrolein), 3-buten-2-one and 3-penten-2-one, but not (R)-(-)-carvone, n-nonanal, n-hexanal, (3Z)-hexanal, cyclohex-2-en-1-one or 12-oxo phytodienoic acid (OPDA) as electron acceptors (PubMed:12514241). Catalyzes the reduction of the alpha,beta-unsaturated bond of 2-alkenals, of lipid peroxide-derived oxenes 9-oxo-10(E),12(Z)-octadecadienoic acid (9-KODE) and 13-oxo-9(Z),11(E)-octadecadienoic acid (13-KODE), as well as 4-oxo-(2E)-nonenal and 4-hydroxynonenal (PubMed:16299173). Can use 12-oxo-10(E) dodecanoate (traumatin), trans-1,3 diphenyl-2-propenone, trans-1,4-diphenyl-2-butene-1,4-dione, 9-oxo-12,13-epoxy-(10E)-octadecenoic acid (trans-EKODE-1b) and 9,13-dihydroxy-10-oxo-11-octadecenoic acid as substrates (PubMed:26678323). Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro) (PubMed:17028190). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro) (PubMed:17028190). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)H homeostasis (PubMed:17028190). {ECO:0000269|PubMed:10848984, ECO:0000269|PubMed:12514241, ECO:0000269|PubMed:16299173, ECO:0000269|PubMed:17028190, ECO:0000269|PubMed:26678323}.,FUNCTION: Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro) (By similarity). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)h homeostasis. {ECO:0000250}. ARA:AT5G16970-MONOMER;MetaCyc:AT5G16970-MONOMER;,ARA:AT5G16990-MONOMER;,ARA:AT5G17000-MONOMER;,ARA:AT5G38000-MONOMER;,ARA:AT5G37980-MONOMER;,ARA:AT5G37940-MONOMER;,ARA:AT3G03080-MONOMER;,ARA:AT1G26320-MONOMER; 1.3.1.-; 1.3.1.74,1.3.1.74 38134,37989,38116,38555,38584,38616,38501,38133,38765,36516,27128,38305,12045,38148 NADPH-dependent oxidoreductase 2-alkenal reductase (AtAER) (EC 1.3.1.-) (EC 1.3.1.74) (NADP-dependent alkenal double bond reductase P1) (DBR1) (NADPH-azodicarbonyl/quinone reductase) (NADPH:2-alkenal/one alpha,beta-hydrogenase) (ALH) (P1-zeta-crystallin protein) (P1-ZCr),NADP-dependent alkenal double bond reductase P2 (EC 1.3.1.74),AT5g16970/F2K13_120 (Putative quinone oxidoreductase) (Zinc-binding dehydrogenase family protein),At5g38000 (NADP-dependent oxidoreductase-like) (Oxidoreductase like protein) (Zinc-binding dehydrogenase family protein),Allyl alcohol dehydrogenase; NADP-dependent oxidoreductase-like protein (Zinc-binding dehydrogenase family protein),Allyl alcohol dehydrogenase; NADP-dependent oxidoreductase-like protein (At5g37940/K18L3_100) (Zinc-binding dehydrogenase family protein),Putative NADP-dependent oxidoreductase (Zinc-binding dehydrogenase family protein),Quinone oxidoreductase-like protein (Zinc-binding dehydrogenase family protein),Allyl alcohol dehydrogenase, putative (Putative allyl alcohol dehydrogenase) (Zinc-binding dehydrogenase family protein),Zinc-binding dehydrogenase family protein,GroES-like family protein cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; 2-alkenal reductase [NAD(P)] activity [GO:0032440]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979],cytosol [GO:0005829]; plasma membrane [GO:0005886]; 2-alkenal reductase [NAD(P)] activity [GO:0032440]; response to oxidative stress [GO:0006979],oxidoreductase activity [GO:0016491],plasmodesma [GO:0009506]; oxidoreductase activity [GO:0016491],oxidation-reduction process [GO:0055114] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:16299173}. locus:2148131;,locus:2148166;,locus:2148186;,locus:2154041;,locus:2153759;,locus:2153799;,locus:2097795;,locus:2148116;,locus:2028736;,locus:2153739; AT5G16970,AT5G16990,AT5G17000,AT5G38000,AT5G37980,AT5G37940,AT3G03080,AT5G16960,AT1G26320,AT5G37960 Zinc-binding dehydrogenase NA NA NA NA NA NA NA ENOG411EB6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase Jasmonate O-methyltransferase, putative (Os10g0173800 protein) (Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase) Q7G6Q5 Q7G6Q5_ORYSJ Os10g0173800 LOC_Os10g09360 OsJ_30860 OSJNBa0011A24.3 OSNPB_100173800 ENOG411EB6I BLH3,BLH10 Q9FWS9,Q9FXG8,A0A1P8AMF2 BLH3_ARATH,BLH10_ARATH,A0A1P8AMF2_ARATH BEL1-like homeodomain protein 3 (BEL1-like protein 3),BEL1-like homeodomain protein 10 (BEL1-like protein 10),BEL1-like homeodomain 3 FUNCTION: Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. 59679,60636,45703 BEL1-like homeodomain protein 3 (BEL1-like protein 3),BEL1-like homeodomain protein 10 (BEL1-like protein 10),BEL1-like homeodomain 3 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:2018398;,locus:2013154; AT1G75410,AT1G19700 POX NA NA NA NA NA NA NA ENOG411EB6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EB6W Q9CAA6,Q5BPV6 Q9CAA6_ARATH,Q5BPV6_ARATH Uncharacterized protein T6L1.14,Uncharacterized protein 42578,29324 Uncharacterized protein T6L1.14,Uncharacterized protein locus:2205435; AT1G68960 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EB6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sigma-54 interaction domain NA NA NA NA NA NA NA ENOG411EB6T VLN5 Q9LVC6 VILI5_ARATH Villin-5 DISRUPTION PHENOTYPE: Retarded pollen tube growth, but no effect on pollen germination, root hair growth, organization or amount of filamentous actin in pollen grains or tubes. Increased sensitivity to latrunculin B (LatB) and instability of actin filaments in pollen tubes. Decreased severing frequency of actin filaments. Vln2 and vln5 double mutants have pollen tubes curled and wider at some regions along the tube. They accumulate actin filaments at the tips of pollen tubes (PubMed:23715472). {ECO:0000269|PubMed:20807879, ECO:0000269|PubMed:23715472}. Male gametophyte defective-S. Huang-2010 FUNCTION: Major actin filament stabilizing factor and regulator of actin dynamics. Binds actin and actin filament bundles in a Ca(2+)-insensitive manner, but caps the barbed end of actin filaments and is able to sever them in a calcium-dependent manner. Required for the construction of actin collars in pollen tubes. Acts synergistically with VLN2 (AC O81644) to regulate polarized pollen tube growth. {ECO:0000269|PubMed:20807879, ECO:0000269|PubMed:23715472}. 107826 Villin-5 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; actin filament binding [GO:0051015]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693] TISSUE SPECIFICITY: Ubiquitous, but expressed preferentially in pollen and stamens. {ECO:0000269|PubMed:20807879}. locus:2165570; AT5G57320 Villin headpiece domain NA NA NA NA NA NA NA ENOG411EB6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_11 Os05g0498800 protein (cDNA clone:002-102-C06, full insert sequence),Os06g0595433 protein Q6L4U5,A0A0P0WYA4 Q6L4U5_ORYSJ,A0A0P0WYA4_ORYSJ Os05g0498800 OJ1057_B02.3 OSNPB_050498800 P0010D04.14,Os06g0595433 OSNPB_060595433 ENOG411EB6R NAC041 O22798,A0A1P8B1M0,B3H636 NAC41_ARATH,A0A1P8B1M0_ARATH,B3H636_ARATH NAC domain-containing protein 41 (ANAC041),NAC domain containing protein 41 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:24243147}. FUNCTION: Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. 31124,24633,30939 NAC domain-containing protein 41 (ANAC041),NAC domain containing protein 41 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2051053; AT2G33480 NAC domain containing protein 41 NA NA NA NA NA NA NA ENOG411EB6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain Ent-pimara-8(14),15-diene synthase (EC 4.2.3.30) (Ent-kaurene synthase-like 5) (OsKS5) (OsKSL5) (Ent-kaurene synthase-like 6) (OsKS6),Ent-isokaur-15-ene synthase (EC 4.2.3.103) (Ent-kaurene synthase-like 5) (OsKS5) (Ent-kaurene synthase-like 6) (OsKS6) (OsKSL6) (Iso-kaurene synthase),Ent-sandaracopimara-8(14),15-diene synthase (EC 4.2.3.29) (Ent-kaurene synthase-like 10) (OsKSL10) (Ent-sandaracopimaradiene synthase) (Gamma-curcumene synthase) (EC 4.2.3.94),Stemar-13-ene synthase (EC 4.2.3.33) (Diterpene cyclase 2) (OsDTC2) (Ent-kaurene synthase-like 8) (OsKSL8) (Stemarene synthase),Os02g0568700 protein,Os11g0474583 protein,Os12g0491500 protein,Os11g0474800 protein (Fragment),Os11g0474600 protein Q6Z5J6,A4KAG8,Q2QQJ5,Q6BDZ9,A0A0N7KFI7,A0A0P0Y268,A0A0P0YAB9,A0A0P0Y285,A0A0N7KSX2 KSL5_ORYSJ,KSL6_ORYSJ,KSL10_ORYSJ,KSL8_ORYSJ,A0A0N7KFI7_ORYSJ,A0A0P0Y268_ORYSJ,A0A0P0YAB9_ORYSJ,A0A0P0Y285_ORYSJ,A0A0N7KSX2_ORYSJ KSL5 KS6 Os02g0571300 LOC_Os02g36220 P0689H05.20,KSL6 KS5 Os02g0571800 LOC_Os02g36264 P0689H05.34,KSL10 KS10 Os12g0491800 LOC_Os12g30824,KSL8 DTC2 Os11g0474800 LOC_Os11g28530,Os02g0568700 OSNPB_020568700,Os11g0474583 OSNPB_110474583,Os12g0491500 OSNPB_120491500,Os11g0474800 OSNPB_110474800,Os11g0474600 OSNPB_110474600 FUNCTION: Catalyzes the conversion of ent-copalyl diphosphate to ent-pimara-8(14),15-diene. {ECO:0000269|PubMed:16861806, ECO:0000269|PubMed:17456599}.,FUNCTION: Catalyzes the conversion of ent-copalyl diphosphate to the phytoalexin precursor ent-isokaur-15-ene.,FUNCTION: Involved in oryzalexin phytoalexins biosynthesis. Catalyzes the conversion of ent-copalyl diphosphate to the phytoalexin precursor ent-sandaracopimaradiene. {ECO:0000269|PubMed:15388982, ECO:0000269|PubMed:17141283, ECO:0000269|PubMed:21323642}.,FUNCTION: Catalyzes the conversion of syn-copalyl diphosphate to the phytoalexin precursor stemarene. {ECO:0000269|PubMed:15280039}. MISCELLANEOUS: Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation).,MISCELLANEOUS: ent-sandaracopimaradiene is a precursor of the phytoalexins oryzalexins A-F. Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation).,MISCELLANEOUS: Stemar-13-ene is a putative precursor of the phytoalexin oryzalexin S. Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation). ENOG411EB6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os06g0604500 protein (Putative small calcium-binding mitochondrial carrier 2) (cDNA clone:J013118F23, full insert sequence) (cDNA clone:J023042A05, full insert sequence),Os06g0604500 protein (Fragment),Os02g0201500 protein Q69X19,A0A0P0WYH1,A0A0P0VG45 Q69X19_ORYSJ,A0A0P0WYH1_ORYSJ,A0A0P0VG45_ORYSJ Os06g0604500 Os06g0604500 OSNPB_060604500 P0481H08.6,Os06g0604500 OSNPB_060604500,Os02g0201500 OSNPB_020201500 ENOG411EB6Z B9DG91,Q1PE85 B9DG91_ARATH,Q1PE85_ARATH AT3G13950 protein (Ankyrin),Ankyrin repeat protein 23401,25136 AT3G13950 protein (Ankyrin),Ankyrin repeat protein integral component of membrane [GO:0016021] locus:2088267;,locus:1006230305; AT3G13950,AT4G13266 NA NA NA NA NA NA NA NA ENOG411ED3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EJZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger Os01g0883400 protein A0A0P0VB64 A0A0P0VB64_ORYSJ Os01g0883400 OSNPB_010883400 ENOG411EJZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411EJZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RRM OSJNBa0039K24.21 protein (Os04g0689700 protein) (cDNA clone:J013051K19, full insert sequence),Os09g0111800 protein (cDNA clone:001-035-D03, full insert sequence) (cDNA clone:J023012N03, full insert sequence),Os02g0669700 protein (cDNA clone:002-111-F10, full insert sequence) Q7XST5,Q0J3H6,Q6ESQ6 Q7XST5_ORYSJ,Q0J3H6_ORYSJ,Q6ESQ6_ORYSJ Os04g0689700 OsJ_16722 OSJNBa0039K24.21 OSNPB_040689700,Os09g0111800 Os09g0111800 OsJ_28377 OSNPB_090111800,Os02g0669700 Os02g0669700 OJ1725_H08.33 OSNPB_020669700 P0684A08.19 ENOG411EJZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411EJZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411EJZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CTD kinase subunit gamma CTK3 Os03g0358000 protein A0A0P0VXN2 A0A0P0VXN2_ORYSJ Os03g0358000 OSNPB_030358000 ENOG411E6SI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) Non-specific lipid-transfer protein Q2QYK8,Q6ZX06,Q2QYL0,Q2RBD1 Q2QYK8_ORYSJ,Q6ZX06_ORYSJ,Q2QYL0_ORYSJ,Q2RBD1_ORYSJ Os12g0115500 LOC_Os12g02340 OsJ_34998 OSNPB_120115500,ltp2 Os11g0116200 LOC_Os11g02424 OsJ_32723 OSNPB_110116200,Os12g0115300 LOC_Os12g02330 Os12g0115300 OsJ_34997 OSNPB_120115300,Os11g0116000 LOC_Os11g02400 Os11g0116000 OsJ_32721 OSNPB_110116000 FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. {ECO:0000256|RuleBase:RU000628}. ENOG411E6SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein NA NA NA NA NA NA NA ENOG411ED3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411DZS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Invertase_neut Cytosolic invertase 1 (OsCYT-INV1) (EC 3.2.1.26),OSJNBa0084A10.16 protein (Os04g0432400 protein) (cDNA clone:J013030A21, full insert sequence),Os04g0432400 protein (Fragment) Q69T31,Q0JD43,A0A0P0WAC5 CINV1_ORYSJ,Q0JD43_ORYSJ,A0A0P0WAC5_ORYSJ CINV1 Os02g0550600 LOC_Os02g34560 OsJ_07095 P0451A10.27,Os04g0432400 OSJNBa0084A10.16 Os04g0432400 OsJ_14860 OSNPB_040432400,Os04g0432400 OSNPB_040432400 FUNCTION: Cytosolic invertase that cleaves sucrose into glucose and fructose and is involved in the regulation of primary root elongation, lateral root formation, floral transition and pollen development. {ECO:0000269|PubMed:18317796}. ENOG411DZS7 MQO24.4 Q94AZ7 Q94AZ7_ARATH AT5g43680/MQO24_4 25032 AT5g43680/MQO24_4 locus:2171919; AT5G43680 NA Os11g0550900 protein,Os11g0551350 protein Q0IS75,A0A0N7KT24 Q0IS75_ORYSJ,A0A0N7KT24_ORYSJ Os11g0550900 OSNPB_110550900,Os11g0551350 OSNPB_110551350 ENOG411DZS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os05g0541400 protein A0A0P0WQ90 A0A0P0WQ90_ORYSJ Os05g0541400 OSNPB_050541400 ENOG411DZS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain Os04g0399300 protein (cDNA clone:001-116-D03, full insert sequence) Q0JDJ5 Q0JDJ5_ORYSJ Os04g0399300 Os04g0399300 OsJ_14649 OSNPB_040399300 ENOG411DZS4 Q1G3F7 Q1G3F7_ARATH Transferases/nucleotidyltransferase R-ATH-72731; 49036 Transferases/nucleotidyltransferase nucleotidyltransferase activity [GO:0016779]; biosynthetic process [GO:0009058] locus:1009023495; AT5G19485 Translation initiation factor eIF-2B Os06g0338900 protein (Putative eukaryotic translation initiation factor 2B, subunit 3) Q5Z6D2 Q5Z6D2_ORYSJ Os06g0338900 OJ1294_G12.5 OSNPB_060338900 P0427E01.43 ENOG411DZS3 SSL10 Q4V3D9 SSL10_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 10 (AtSSL10) (Strictosidine synthase 8) (AtSS8) ARA:AT3G57030-MONOMER; 41001 Protein STRICTOSIDINE SYNTHASE-LIKE 10 (AtSSL10) (Strictosidine synthase 8) (AtSS8) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058] locus:2080575; AT3G57030 strictosidine synthase NA NA NA NA NA NA NA ENOG411DZS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os04g0432800 protein A0A0P0WAE0 A0A0P0WAE0_ORYSJ Os04g0432800 OSNPB_040432800 ENOG411DZS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycerophosphoryl diester phosphodiesterase family Os07g0602800 protein (Fragment) A0A0P0X8I7 A0A0P0X8I7_ORYSJ Os07g0602800 OSNPB_070602800 ENOG411DZSN PCMP-H49 Q9FHF9,Q9FHG1 PP419_ARATH,Q9FHG1_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial,At5g46440 (PPR containing-like protein) 78877,10481 Pentatricopeptide repeat-containing protein At5g46460, mitochondrial,At5g46440 (PPR containing-like protein) intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2151501;,locus:2151481; AT5G46460,AT5G46440 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DZSM AMY2 Q8LFG1 AMY2_ARATH Probable alpha-amylase 2 (AtAMY2) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:15637061}. FUNCTION: Probable alpha-amylase that does not seem to be required for breakdown of transitory starch in leaves. {ECO:0000269|PubMed:15637061}. ARA:AT1G76130-MONOMER; 3.2.1.1 47170 Probable alpha-amylase 2 (AtAMY2) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) cytosol [GO:0005829]; extracellular region [GO:0005576]; alpha-amylase activity [GO:0004556]; alpha-amylase activity (releasing maltohexaose) [GO:0103025]; calcium ion binding [GO:0005509]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in developing siliques. {ECO:0000269|PubMed:15927942}. locus:2199808; AT1G76130 alpha-amylase NA NA NA NA NA NA NA ENOG411DZSK DIM1B Q9FK02 DIM1B_ARATH Ribosomal RNA small subunit methyltransferase, mitochondrial (EC 2.1.1.-) (18S mitochondrial rRNA (adenine(1914)-N(6)/adenine(1915)-N(6))-dimethyltransferase) (Adenosine dimethyl transferase 1B) (Dimethyladenosine transferase 1B) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions or under cold stress, but lack of methylation of the adenosine dinucleotide present in the mitochondrial 18S rRNA. {ECO:0000269|PubMed:19929881}. FUNCTION: N6-adenine methyltransferase which modifies the AA dinucleotide at the plant mitochondrial 18S rRNA nucleotides A1914 and A1915. Not active as mitochondrial transcription factor. {ECO:0000269|PubMed:19929881}. 2.1.1.- 43315 Ribosomal RNA small subunit methyltransferase, mitochondrial (EC 2.1.1.-) (18S mitochondrial rRNA (adenine(1914)-N(6)/adenine(1915)-N(6))-dimethyltransferase) (Adenosine dimethyl transferase 1B) (Dimethyladenosine transferase 1B) mitochondrion [GO:0005739]; RNA binding [GO:0003723]; rRNA (adenine-N6,N6-)-dimethyltransferase activity [GO:0000179]; adenosine metabolic process [GO:0046085] locus:2155031; AT5G66360 dimethyladenosine rRNA adenine N(6)-methyltransferase (EC 2.1.1.-) (Fragment) Q0D661 Q0D661_ORYSJ Os07g0509600 Os07g0509600 OSNPB_070509600 ENOG411DZSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NBS-LRR disease resistance protein Os11g0212000 protein A0A0P0Y076 A0A0P0Y076_ORYSJ Os11g0212000 OSNPB_110212000 ENOG411DZSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain B3 domain-containing protein Os01g0905400 Q5N6V0 Y1054_ORYSJ Os01g0905400 LOC_Os01g67830 OsJ_04461 OSJNOa108M02.5 ENOG411DZSG O23129,B3H5L7 O23129_ARATH,B3H5L7_ARATH T-complex protein 11 (Uncharacterized protein At1g22930) (Uncharacterized protein F19G10.11),T-complex protein 11 127623,114813 T-complex protein 11 (Uncharacterized protein At1g22930) (Uncharacterized protein F19G10.11),T-complex protein 11 plasmodesma [GO:0009506] locus:2017749; AT1G22930 T-complex protein 11 Os04g0439100 protein (Fragment),Os02g0556700 protein (Putative T-complex protein 11),OJ000114_01.8 protein (Os04g0439200 protein),Os02g0556700 protein (Fragment),Os04g0439100 protein Q0JD06,Q6ZI82,Q7XQG9,A0A0P0VKJ6,A0A0P0WAP2,A0A0N7KJ37 Q0JD06_ORYSJ,Q6ZI82_ORYSJ,Q7XQG9_ORYSJ,A0A0P0VKJ6_ORYSJ,A0A0P0WAP2_ORYSJ,A0A0N7KJ37_ORYSJ Os04g0439100 Os04g0439100 OSNPB_040439100,OJ1008_F08.17-1 Os02g0556700 OSNPB_020556700,Os04g0439200 OJ000114_01.8 OsJ_14908 OSNPB_040439200,Os02g0556700 OSNPB_020556700,Os04g0439100 OSNPB_040439100 ENOG411DZSE Q940L8,F4J5W3 Q940L8_ARATH,F4J5W3_ARATH AT3g58520/F14P22_110 (Ubiquitin carboxyl-terminal hydrolase family protein),Ubiquitin carboxyl-terminal hydrolase family protein 48821,47650 AT3g58520/F14P22_110 (Ubiquitin carboxyl-terminal hydrolase family protein),Ubiquitin carboxyl-terminal hydrolase family protein hydrolase activity [GO:0016787] locus:2076361; AT3G58520 Plant organelle RNA recognition domain Os04g0546100 protein A0A0P0WD03 A0A0P0WD03_ORYSJ Os04g0546100 OSNPB_040546100 ENOG411DZSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutamate-gated kainate-type ion channel receptor subunit GluR5 NA NA NA NA NA NA NA ENOG411DZSC F4IUJ0,F4IUI9 F4IUJ0_ARATH,F4IUI9_ARATH Uncharacterized protein 27824,29165 Uncharacterized protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535] locus:2057716; AT2G26340 NA Os03g0176600 protein (Os03g0176700 protein) B9FBM2 B9FBM2_ORYSJ Os03g0176700 Os03g0176600 OsJ_09625 OSNPB_030176700 ENOG411DZSB TON1 Recruiting Motif 22,TRM22 Q9FZH7,A0A1P8ARP0 Q9FZH7_ARATH,A0A1P8ARP0_ARATH DnaA initiator-associating protein (F1O19.10 protein),DnaA initiator-associating protein 92796,92992 DnaA initiator-associating protein (F1O19.10 protein),DnaA initiator-associating protein plasmodesma [GO:0009506] locus:2019728; AT1G67040 NA Os05g0551100 protein Q6AUD7 Q6AUD7_ORYSJ Os05g0551100 OSJNBa0079H23.5 OSNPB_050551100 ENOG411DZSA TRFL6 Q94AX9,F4IDF1 Q94AX9_ARATH,F4IDF1_ARATH At1g72650/F28P22_16 (MYB transcription factor) (TRF-like 6),TRF-like 6 69543,70230 At1g72650/F28P22_16 (MYB transcription factor) (TRF-like 6),TRF-like 6 DNA binding [GO:0003677],nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; telomeric loop formation [GO:0031627] locus:2030255; AT1G72650 Transcription factor MYB transcription factor-like (Myb transcription factor) (Os02g0776700 protein) (cDNA clone:J023049B09, full insert sequence),Os02g0776700 protein (Fragment) Q6YZ61,A0A0P0VQG0 Q6YZ61_ORYSJ,A0A0P0VQG0_ORYSJ Os02g0776700 Os02g0776700 OJ1534_E09.1-1 OsJ_08581 OSJNBb0013K01.35-1 OSNPB_020776700,Os02g0776700 OSNPB_020776700 ENOG411DZSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPPc Os02g0477700 protein (Fragment) Q0E180 Q0E180_ORYSJ Os02g0477700 Os02g0477700 OSNPB_020477700 ENOG411DZSY SIP1-1,SIP1-2 Q9M8W5,Q9FK43 SIP11_ARATH,SIP12_ARATH Aquaporin SIP1-1 (Small basic intrinsic protein 1-1) (AtSIP1;1),Probable aquaporin SIP1-2 (Small basic intrinsic protein 1-2) (AtSIP1;2) FUNCTION: Water channel required to facilitate the transport of water across cell membrane. {ECO:0000269|PubMed:16223486}. 25706,26036 Aquaporin SIP1-1 (Small basic intrinsic protein 1-1) (AtSIP1;1),Probable aquaporin SIP1-2 (Small basic intrinsic protein 1-2) (AtSIP1;2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220] TISSUE SPECIFICITY: Expressed in roots and above ground. Expressed in elongating regions of the root tips, trichome cells of the rosette leaves, vascular tissues of the flower petals, stigma, stamens (anthers and filaments), pollen and the top and bottom (receptacle) of siliques. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:16223486}.,TISSUE SPECIFICITY: Expressed in roots and above ground. Expressed in elongating regions of the root tips, cotyledons, minor veins and hydathode cells of the rosette leaves. Weakly expressed in vascular tissues of the flower petals, filaments of stamens, upper part of the styles and receptacles of the siliques. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:16223486}. locus:2103010;,locus:2146268; AT3G04090,AT5G18290 basic intrinsic protein NA NA NA NA NA NA NA ENOG411DZSX FKBP20-2 Q0WRJ7,A0A1I9LRJ6 FK202_ARATH,A0A1I9LRJ6_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic (PPIase FKBP20-2) (EC 5.2.1.8) (FK506-binding protein 20-2) (AtFKBP20-2) (Immunophilin FKBP20-2) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) Reduced plant growth. Lower rate of PSII activity and oxygen evolution. Lower levels of PSII supercomplex accumulation and elevated levels of monomer and dimer building blocks in mutant plants compared with WT. Dwarf; Small, pale green leaves-S. Luan-2006 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Involved in the accumulation of the PSII complex. {ECO:0000250, ECO:0000269|PubMed:16894144}. MISCELLANEOUS: PPIase activity is unaffected on reduction. 5.2.1.8 27192,30386 Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic (PPIase FKBP20-2) (EC 5.2.1.8) (FK506-binding protein 20-2) (AtFKBP20-2) (Immunophilin FKBP20-2) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; cytoplasm [GO:0005737]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; FK506 binding [GO:0005528]; oxidoreductase activity [GO:0016491]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077]; photosystem II assembly [GO:0010207],peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2103366; AT3G60370 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q7XHR0 Q7XHR0_ORYSJ Os07g0490400 Os07g0490400 OSNPB_070490400 P0477A12.35 ENOG411DZSW FRS1 Q5UBY2,F4JU19,A0A1P8B4E2,A0A1P8B4E0,A0A1P8B4E6 FRS1_ARATH,F4JU19_ARATH,A0A1P8B4E2_ARATH,A0A1P8B4E0_ARATH,A0A1P8B4E6_ARATH Protein FAR1-RELATED SEQUENCE 1,FAR1-related sequence 1 FUNCTION: Putative transcription activator involved in regulating light control of development. 80312,90328,87755,89403,87652 Protein FAR1-RELATED SEQUENCE 1,FAR1-related sequence 1 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585],zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2119737; AT4G19990 FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411DZSV F13M14.23,F13M14.24,NAC052,NAC050,NAC077 Q9SQY0,Q9SQX9,A0A178VCG8,A0A1P8BGF2,F4J3T0,F4J3S8,F4JW93,F4J3S6 Q9SQY0_ARATH,Q9SQX9_ARATH,A0A178VCG8_ARATH,A0A1P8BGF2_ARATH,F4J3T0_ARATH,F4J3S8_ARATH,F4JW93_ARATH,F4J3S6_ARATH F18K10.6 protein (NAC domain containing protein 52) (Uncharacterized protein F13M14.23),F18K10.5 protein (NAC domain containing protein 50) (Uncharacterized protein At3g10480) (Uncharacterized protein F13M14.24),NAC domain containing protein 52,NAC transcription factor-like protein,NAC domain containing protein 50,NAC domain protein FUNCTION: Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.,FUNCTION: Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. 51291,50355,40113,21047,26949,50227,26779,59463 F18K10.6 protein (NAC domain containing protein 52) (Uncharacterized protein F13M14.23),F18K10.5 protein (NAC domain containing protein 50) (Uncharacterized protein At3g10480) (Uncharacterized protein F13M14.24),NAC domain containing protein 52,NAC transcription factor-like protein,NAC domain containing protein 50,NAC domain protein nucleolus [GO:0005730]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; posttranscriptional gene silencing [GO:0016441]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2075835;,locus:2179944;,locus:2075855; AT3G10490,AT3G10480,AT5G04400 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411DZSU WRKY69,WRKY65 Q93WV5,Q9LP56 WRK69_ARATH,WRK65_ARATH Probable WRKY transcription factor 69 (WRKY DNA-binding protein 69),Probable WRKY transcription factor 65 (WRKY DNA-binding protein 65) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 30160,29054 Probable WRKY transcription factor 69 (WRKY DNA-binding protein 69),Probable WRKY transcription factor 65 (WRKY DNA-binding protein 65) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2099044;,locus:2029919; AT3G58710,AT1G29280 Transcription factor Os01g0750100 protein (WRKY transcription factor-like),Os01g0750100 protein (WRKY transcription factor 13) (WRKY transcription factor-like) (WRKY13) (cDNA clone:J013100D22, full insert sequence),Os01g0750100 protein (Fragment) Q5JNH8,Q94J08,A0A0N7KDR5 Q5JNH8_ORYSJ,Q94J08_ORYSJ,A0A0N7KDR5_ORYSJ P0481E12.50-2 Os01g0750100 OSNPB_010750100,P0481E12.50-1 Os01g0750100 WRKY13 OSNPB_010750100,Os01g0750100 OSNPB_010750100 ENOG411DZST F4JCR1,F4JCR3,F4JCR2 F4JCR1_ARATH,F4JCR3_ARATH,F4JCR2_ARATH Ubiquitin carboxyl-terminal hydrolase-related protein 177390,181136,181037 Ubiquitin carboxyl-terminal hydrolase-related protein nucleic acid binding [GO:0003676]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579] locus:2097935;,locus:2097835; AT3G47890,AT3G47910 ubiquitin Os03g0165600 protein (Fragment) Q0DUV5 Q0DUV5_ORYSJ Os03g0165600 Os03g0165600 OSNPB_030165600 ENOG411DZSS COX11 Q8GWR0 COX11_ARATH Cytochrome c oxidase assembly protein COX11, mitochondrial FUNCTION: Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I. {ECO:0000250}. 32605 Cytochrome c oxidase assembly protein COX11, mitochondrial integral component of mitochondrial membrane [GO:0032592]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; protein self-association [GO:0043621]; pollen germination [GO:0009846]; positive regulation of cytochrome-c oxidase activity [GO:1904960]; post-embryonic root morphogenesis [GO:0010101] locus:2204838; AT1G02410 cytochrome c oxidase assembly protein Cytochrome c oxidase assembly protein ctaG, putative, expressed (Os03g0718600 protein) Q10DV4 Q10DV4_ORYSJ Os03g0718600 LOC_Os03g50940 OSNPB_030718600 ENOG411DZSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Endosperm specific protein-like (Os06g0656800 protein),Os05g0159850 protein (Fragment),Os02g0483000 protein (Fragment) Q67W76,A0A0P0WID6,A0A0P0VJ29 Q67W76_ORYSJ,A0A0P0WID6_ORYSJ,A0A0P0VJ29_ORYSJ Os06g0656800 Os06g0656800 OSNPB_060656800 P0460H04.37,Os05g0159850 OSNPB_050159850,Os02g0483000 OSNPB_020483000 ENOG411E6SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin NA NA NA NA NA NA NA ENOG411EAE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0161800 protein) Q53PN3 Q53PN3_ORYSJ Os11g0161800 LOC_Os11g06300 OsJ_33081 OSNPB_110161800 ENOG411DQ39 U2AF65A,U2AF65B,F23C21.4,ATU2AF65A O23212,Q8L716,Q9C6C1,F4JQG2 U2A2A_ARATH,U2A2B_ARATH,Q9C6C1_ARATH,F4JQG2_ARATH Splicing factor U2af large subunit A (U2 auxiliary factor 65 kDa subunit A) (U2 small nuclear ribonucleoprotein auxiliary factor large subunit A) (U2 snRNP auxiliary factor large subunit A),Splicing factor U2af large subunit B (U2 auxiliary factor 65 kDa subunit B) (U2 small nuclear ribonucleoprotein auxiliary factor large subunit B) (U2 snRNP auxiliary factor large subunit B),RNA-binding (RRM/RBD/RNP motifs) family protein (U2 snRNP auxiliary factor, large subunit, putative; 15147-15692),U2 snRNP auxilliary factor, large subunit, splicing factor FUNCTION: Necessary for the splicing of pre-mRNA. {ECO:0000250}.,FUNCTION: Necessary for the splicing of pre-mRNA. {ECO:0000256|RuleBase:RU364135}. 63551,66316,12044,60665 Splicing factor U2af large subunit A (U2 auxiliary factor 65 kDa subunit A) (U2 small nuclear ribonucleoprotein auxiliary factor large subunit A) (U2 snRNP auxiliary factor large subunit A),Splicing factor U2af large subunit B (U2 auxiliary factor 65 kDa subunit B) (U2 small nuclear ribonucleoprotein auxiliary factor large subunit B) (U2 snRNP auxiliary factor large subunit B),RNA-binding (RRM/RBD/RNP motifs) family protein (U2 snRNP auxiliary factor, large subunit, putative; 15147-15692),U2 snRNP auxilliary factor, large subunit, splicing factor commitment complex [GO:0000243]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; U2-type prespliceosome [GO:0071004]; U2AF [GO:0089701]; poly-pyrimidine tract binding [GO:0008187]; pre-mRNA 3'-splice site binding [GO:0030628]; defense response to bacterium [GO:0042742]; mRNA splicing, via spliceosome [GO:0000398],commitment complex [GO:0000243]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; U2-type prespliceosome [GO:0071004]; U2AF [GO:0089701]; poly-pyrimidine tract binding [GO:0008187]; pre-mRNA 3'-splice site binding [GO:0030628]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],commitment complex [GO:0000243]; nuclear speck [GO:0016607]; U2-type prespliceosome [GO:0071004]; U2AF [GO:0089701]; poly-pyrimidine tract binding [GO:0008187]; pre-mRNA 3'-splice site binding [GO:0030628],nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397] locus:2115280;,locus:2206001;,locus:2025860; AT4G36690,AT1G60900,AT1G60830 splicing factor U2af large subunit Splicing factor U2af large subunit A (U2 auxiliary factor 65 kDa subunit A) (U2 small nuclear ribonucleoprotein auxiliary factor large subunit A) (U2 snRNP auxiliary factor large subunit A),Splicing factor U2af large subunit B (U2 auxiliary factor 65 kDa subunit B) (U2 small nuclear ribonucleoprotein auxiliary factor large subunit B) (U2 snRNP auxiliary factor large subunit B),U2 snRNP auxiliary factor large subunit,Os11g0682300 protein Q2R0Q1,Q2QZL4,H2KWA3,A0A0P0Y5P6 U2A2A_ORYSJ,U2A2B_ORYSJ,H2KWA3_ORYSJ,A0A0P0Y5P6_ORYSJ U2AF65A Os11g0636900 LOC_Os11g41820 OsJ_34542,U2AF65B Os11g0682300 LOC_Os11g45590,Os11g0636900 LOC_Os11g41820 OSNPB_110636900,Os11g0682300 OSNPB_110682300 FUNCTION: Necessary for the splicing of pre-mRNA. {ECO:0000250}.,FUNCTION: Necessary for the splicing of pre-mRNA. {ECO:0000256|RuleBase:RU364135}. ENOG411DQ30 CELLULOSE SYNTHASE LIKE C5 Q8RWB7 Q8RWB7_ARATH At1g29790 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At1g29790) 41956 At1g29790 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At1g29790) cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2019312; AT1G29790 NA Os10g0578600 protein (Fragment),Expressed protein (Os10g0578600 protein) (cDNA clone:002-124-C02, full insert sequence) Q0IVC7,Q336N1 Q0IVC7_ORYSJ,Q336N1_ORYSJ Os10g0578600 OSNPB_100578600,Os10g0578600 LOC_Os10g42770 OSNPB_100578600 ENOG411DQ31 GEK1 Q9ZPQ3,A0A1P8B2P5 GEK1_ARATH,A0A1P8B2P5_ARATH D-aminoacyl-tRNA deacylase (EC 3.1.1.96) (Ethanol tolerance protein GEKO1),D-aminoacyl-tRNA deacylase DISRUPTION PHENOTYPE: Increased sensitivity to acetaldehyde and hypersensitivity to ethanol. {ECO:0000269|PubMed:15215505}. Ethanol hypersensitivity.,When the mutant seedlings grown on normal medium were transferred to medium containing 0.03-0.1% (v/v) ethanol their growth was reduced strongly.,The germination rates of the mutant were significantly reduced by 0.003% (v/v~0.5 mM) ethanol whereas the wild type germinated normally in the presence of at least 0.3% (v/v) ethanol.,The mutant died eventually in the presence of 0.1% ethanol. Sensitive to ethanol-K. Shinozaki-2004 FUNCTION: Hydrolyzes D-aminoacyl-tRNA into D-amino acid and free tRNA. Broad specificity toward the amino acid, but strict specificity toward the D-isomer. Seems to be required for ethanol tolerance. {ECO:0000269|PubMed:15215500, ECO:0000269|PubMed:17251192}. 3.1.1.96; 3.1.1.96 34732,39775 D-aminoacyl-tRNA deacylase (EC 3.1.1.96) (Ethanol tolerance protein GEKO1),D-aminoacyl-tRNA deacylase cytosol [GO:0005829]; nucleus [GO:0005634]; D-aminoacyl-tRNA deacylase activity [GO:0051499]; metal ion binding [GO:0046872]; D-amino acid catabolic process [GO:0019478],D-aminoacyl-tRNA deacylase activity [GO:0051499] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15215500}. locus:2044279; AT2G03800 Ethanol tolerance protein GEKO1 Os08g0339200 protein (Putative GEKO1) (cDNA clone:J033001O09, full insert sequence),GEKO1-like protein (Os09g0248000 protein),Os09g0248000 protein Q6Z0F0,Q6K4F8,A0A0P0XK57,A0A0P0XKJ3 Q6Z0F0_ORYSJ,Q6K4F8_ORYSJ,A0A0P0XK57_ORYSJ,A0A0P0XKJ3_ORYSJ Os08g0339200 OsJ_26959 OSJNBa0062G05.10 OSNPB_080339200 P0702G08.23,OJ1451_A02.32-2 P0499G10.13-2 Os09g0248000 OSNPB_090248000,Os09g0248000 OSNPB_090248000 ENOG411DQ32 O23673,A0A1P8ATD0,Q3E6Y8 O23673_ARATH,A0A1P8ATD0_ARATH,Q3E6Y8_ARATH Nitroreductase family protein (T7I23.2 protein) (Uncharacterized protein At1g02020),Nitroreductase family protein 71366,50076,60694 Nitroreductase family protein (T7I23.2 protein) (Uncharacterized protein At1g02020),Nitroreductase family protein chloroplast [GO:0009507]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:2205639; AT1G02020 Inherit from COG: nitroreductase Os10g0190800 protein A0A0P0XT12 A0A0P0XT12_ORYSJ Os10g0190800 OSNPB_100190800 ENOG411DQ33 SFGH Q8LAS8 SFGH_ARATH S-formylglutathione hydrolase (AtSFGH) (EC 3.1.2.12) (Esterase D) FUNCTION: Serine hydrolase involved in the detoxification of formaldehyde. {ECO:0000269|PubMed:16626737}. MISCELLANEOUS: The conserved Cys-59, implicated in catalysis in cysteine hydrolases, lies in close proximity to the serine hydrolase triad, serving a gate-keeping function in regulating access to the active site via disulfide formation with glutathione. ARA:AT2G41530-MONOMER; R-ATH-156590; 3.1.2.12; 3.1.2.12 31656 S-formylglutathione hydrolase (AtSFGH) (EC 3.1.2.12) (Esterase D) apoplast [GO:0048046]; carboxylic ester hydrolase activity [GO:0052689]; S-formylglutathione hydrolase activity [GO:0018738]; formaldehyde catabolic process [GO:0046294]; response to cadmium ion [GO:0046686] locus:2062729; AT2G41530 s-formylglutathione Os01g0939700 protein (cDNA clone:002-183-E01, full insert sequence),S-formylglutathione hydrolase (EC 3.1.2.12) B7F3S0,Q5JLP6 B7F3S0_ORYSJ,Q5JLP6_ORYSJ Os01g0939700 OSNPB_010939700,B1150F11.18-1 Os01g0939700 OSNPB_010939700 FUNCTION: Serine hydrolase involved in the detoxification of formaldehyde. {ECO:0000256|RuleBase:RU363068}. ENOG411DQ34 AIR9 F4IIU4,A0A1P8B0X3 AIR9_ARATH,A0A1P8B0X3_ARATH 187-kDa microtubule-associated protein AIR9 (Auxin-induced in root cultures protein 9),Outer arm dynein light chain 1 protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:25908862}. Male gametophyte defective; Rare embryo defective (inferred)-D. Twell-2004 FUNCTION: Microtubule-associated protein that may be involved in the maturation of cell plates and proper insertion of cross-walls after cytokinesis. {ECO:0000269|PubMed:17027491}. 186862,194134 187-kDa microtubule-associated protein AIR9 (Auxin-induced in root cultures protein 9),Outer arm dynein light chain 1 protein cortical microtubule [GO:0055028]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; preprophase band [GO:0009574]; cell cycle [GO:0007049]; cell division [GO:0051301]; lateral root morphogenesis [GO:0010102]; response to auxin [GO:0009733] DEVELOPMENTAL STAGE: Expressed during auxin-induced lateral root formation. {ECO:0000269|PubMed:10080694}. TISSUE SPECIFICITY: Strongly expressed in dividing cells, like the meristemic region of the root tip. {ECO:0000269|PubMed:25908862}. locus:2061539; AT2G34680 Inherit from KOG: leucine rich repeat Os07g0148800 protein (Fragment) Q0D8L5 Q0D8L5_ORYSJ Os07g0148800 Os07g0148800 OSNPB_070148800 ENOG411DQ35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial glycoprotein Os05g0456000 protein (Unknow protein) (cDNA clone:001-015-D08, full insert sequence) (cDNA clone:J033081C21, full insert sequence) Q60EL9 Q60EL9_ORYSJ Os05g0456000 Os05g0456000 OJ1651_D06.14 OsJ_18784 OSNPB_050456000 ENOG411DQ36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os09g0132200 protein (cDNA clone:006-308-H03, full insert sequence),Os09g0132200 protein B7E4N3,Q0J3C5 B7E4N3_ORYSJ,Q0J3C5_ORYSJ Os09g0132200 OSNPB_090132200 ENOG411DQ37 CALS11 Q9S9U0 CALSB_ARATH Callose synthase 11 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 1) DISRUPTION PHENOTYPE: Plants develop collapsed and inviable pollen grains. {ECO:0000269|PubMed:16021399}. FUNCTION: Required the formation of the callose wall separating the tetraspores (interstitial wall), but not for the callose wall surrounding the pollen mother cells (peripheral wall). Functionally redudant to CALS12 (GSL5). During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals. {ECO:0000269|PubMed:16021399}. ARA:AT4G04970-MONOMER; 2.4.1.34 205526 Callose synthase 11 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 1) 1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; circadian rhythm [GO:0007623]; pollen development [GO:0009555]; regulation of cell shape [GO:0008360]; reproduction [GO:0000003] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16021399}. locus:2138396; AT4G04970 callose synthase Os01g0754200 protein (Putative callose synthase 1 catalytic subunit) (cDNA clone:J013036H01, full insert sequence),Os01g0754200 protein (Fragment) Q8S1X0,A0A0P0V8B5 Q8S1X0_ORYSJ,A0A0P0V8B5_ORYSJ P0503C12.17-1 Os01g0754200 OSNPB_010754200,Os01g0754200 OSNPB_010754200 ENOG411DQ3H MOS14 Q8GUL2 MOS14_ARATH Transportin MOS14 (Importin beta MOS14) (Protein MODIFIER OF SNC1 14) (Transportin-SR) (TRN-SR) DISRUPTION PHENOTYPE: Semi-dwarf phenotype. {ECO:0000269|PubMed:21738492}. FUNCTION: Functions as nuclear import receptor for serine-arginine rich (SR) proteins. Regulates nuclear import of SR proteins that are required for proper splicing of the two resistance (R) genes SNC1 and RPS4, a crucial step for their functions in plant immunity. {ECO:0000269|PubMed:21738492}. 106917 Transportin MOS14 (Importin beta MOS14) (Protein MODIFIER OF SNC1 14) (Transportin-SR) (TRN-SR) cytoplasm [GO:0005737]; nuclear membrane [GO:0031965]; nucleus [GO:0005634]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; protein import into nucleus [GO:0006606]; regulation of RNA splicing [GO:0043484] locus:2154159; AT5G62600 Exportin 1-like protein Os10g0477800 protein,Os10g0477800 protein (Fragment) B9G693,A0A0P0XVQ1 B9G693_ORYSJ,A0A0P0XVQ1_ORYSJ Os10g0477800 OsJ_31893 OSNPB_100477800,Os10g0477800 OSNPB_100477800 ENOG411DQ3I BHLH111 Q9FYJ6,A0A1P8ASB7,A0A1P8ASA7,A0A1P8ASD5,A0A1P8ASG1,A0A1P8ASA2,A0A1P8ASA4,A0A1P8ASA6 BH111_ARATH,A0A1P8ASB7_ARATH,A0A1P8ASA7_ARATH,A0A1P8ASD5_ARATH,A0A1P8ASG1_ARATH,A0A1P8ASA2_ARATH,A0A1P8ASA4_ARATH,A0A1P8ASA6_ARATH Transcription factor bHLH111 (Basic helix-loop-helix protein 111) (AtbHLH111) (bHLH 111) (Transcription factor EN 66) (bHLH transcription factor bHLH111),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 36231,48803,42163,41662,49480,41498,42000,46435 Transcription factor bHLH111 (Basic helix-loop-helix protein 111) (AtbHLH111) (bHLH 111) (Transcription factor EN 66) (bHLH transcription factor bHLH111),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983],integral component of membrane [GO:0016021]; DNA binding [GO:0003677],DNA binding [GO:0003677] AT1G31050 HLH Os07g0471900 protein,Os07g0471683 protein Q0D6J9,A0A0P0X686 Q0D6J9_ORYSJ,A0A0P0X686_ORYSJ Os07g0471900 Os07g0471900 OSNPB_070471900,Os07g0471683 OSNPB_070471683 ENOG411DQ3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (By similarity) NA NA NA NA NA NA NA ENOG411DQ3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter Os05g0410900 protein (Putative proton-dependent oligopeptide transporter (POT)) (cDNA clone:002-117-H03, full insert sequence) (cDNA clone:J023060I20, full insert sequence),Os05g0411100 protein,Os05g0410500 protein (Fragment) Q6AU92,B9FIM6,Q0DI76 Q6AU92_ORYSJ,B9FIM6_ORYSJ,Q0DI76_ORYSJ Os05g0410900 OsJ_18532 OSNPB_050410900 P0668F02.9,Os05g0411100 OsJ_18534 OSNPB_050411100,Os05g0410500 Os05g0410500 OSNPB_050410500 ENOG411DQ3M UVH1 Q9LKI5,F4JWY5,A0A1P8BAA2 XPF_ARATH,F4JWY5_ARATH,A0A1P8BAA2_ARATH DNA repair endonuclease UVH1 (EC 3.1.-.-) (DNA excision repair protein XP-F homolog) (Ultraviolet hypersensitive 1) (AtRAD1),Restriction endonuclease, type II-like superfamily protein Early senescence; Sensitive to UV light and ionizing radiation-D. Mount-2000 FUNCTION: Seems to be involved in nucleotide excision repair (NER) of damaged DNA (dark repair mechanism). Involved in repair of UV light, and probably oxidative damage. The UVH1/RAD1-ERCC1/RAD10 complex may act as an endonuclease making DNA incision 5' to the lesion site. In vitro, is implicated in double strand breaks (DSBs) repair and is required for homologous recombination in the presence of non-homologous overhangs. May mediate the induction of a DNA-damage sensitive cell-cycle checkpoint during the G2 phase. {ECO:0000269|PubMed:10758501, ECO:0000269|PubMed:10758502, ECO:0000269|PubMed:11027708, ECO:0000269|PubMed:11826311, ECO:0000269|PubMed:12383497, ECO:0000269|PubMed:12393748, ECO:0000269|PubMed:12554710}. R-ATH-5696395;R-ATH-5696400;R-ATH-6782135; 3.1.-.- 107635,77547,99995 DNA repair endonuclease UVH1 (EC 3.1.-.-) (DNA excision repair protein XP-F homolog) (Ultraviolet hypersensitive 1) (AtRAD1),Restriction endonuclease, type II-like superfamily protein nucleotide-excision repair factor 1 complex [GO:0000110]; damaged DNA binding [GO:0003684]; single-stranded DNA binding [GO:0003697]; single-stranded DNA endodeoxyribonuclease activity [GO:0000014]; DNA repair [GO:0006281]; double-strand break repair via homologous recombination [GO:0000724]; nucleotide-excision repair [GO:0006289]; nucleotide-excision repair involved in interstrand cross-link repair [GO:1901255]; nucleotide-excision repair, DNA incision, 5'-to lesion [GO:0006296]; resolution of meiotic recombination intermediates [GO:0000712]; response to oxidative stress [GO:0006979]; response to radiation [GO:0009314],endonuclease activity [GO:0004519],DNA binding [GO:0003677]; endonuclease activity [GO:0004519] TISSUE SPECIFICITY: Isoform 1 and isoform 2 are widely expressed, predominantly in flowers, meristems and stems. Isoform 3 is detected at low levels. {ECO:0000269|PubMed:10758501, ECO:0000269|PubMed:10758502}. locus:2163011; AT5G41150 DNA repair endonuclease ERCC4 domain containing protein, expressed (Os03g0100400 protein) (cDNA clone:J013151H20, full insert sequence) (cDNA clone:J033104L13, full insert sequence) Q10T59 Q10T59_ORYSJ Os03g0100400 LOC_Os03g01100 Os03g0100400 OsJ_09049 OSNPB_030100400 ENOG411DQ3N RRA1,RRA3,RRA2 Q9C9Q6,Q9LN62,Q9C9Q5 RRA1_ARATH,RRA3_ARATH,RRA2_ARATH Arabinosyltransferase RRA1 (EC 2.4.2.-) (Protein REDUCED RESIDUAL ARABINOSE 1),Arabinosyltransferase RRA3 (EC 2.4.2.-) (Protein REDUCED RESIDUAL ARABINOSE 3),Arabinosyltransferase RRA2 (EC 2.4.2.-) (Protein REDUCED RESIDUAL ARABINOSE 1) DISRUPTION PHENOTYPE: Reduced arabinose content in the insoluble cell wall fraction of meristematic region (PubMed:17401635). Reduced root hair length and content of arabinosylated extensins in root cell walls (PubMed:21680836). {ECO:0000269|PubMed:17401635, ECO:0000269|PubMed:21680836}.,DISRUPTION PHENOTYPE: Reduced root hair length and content of arabinosylated extensins in root cell walls. {ECO:0000269|PubMed:21680836}. FUNCTION: Plays a role in the arabinosylation of cell wall components (PubMed:17401635). Involved in the arabinosylation of extensin proteins in root hair cells. Extensins are structural glycoproteins present in cell walls and its arabinosylation is important for root hair cell development (PubMed:21680836). {ECO:0000269|PubMed:17401635, ECO:0000269|PubMed:21680836}.,FUNCTION: Plays a role in the arabinosylation of cell wall components. Involved in the arabinosylation of extensin proteins in root hair cells (PubMed:21680836). Extensins are structural glycoproteins present in cell walls and its arabinosylation is important for root hair cell development and root hair tip growth (PubMed:21680836, PubMed:25944827). {ECO:0000269|PubMed:21680836, ECO:0000269|PubMed:25944827}. 2.4.2.- 45475,48251,48169 Arabinosyltransferase RRA1 (EC 2.4.2.-) (Protein REDUCED RESIDUAL ARABINOSE 1),Arabinosyltransferase RRA3 (EC 2.4.2.-) (Protein REDUCED RESIDUAL ARABINOSE 3),Arabinosyltransferase RRA2 (EC 2.4.2.-) (Protein REDUCED RESIDUAL ARABINOSE 1) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; root hair cell development [GO:0080147],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; root hair cell development [GO:0080147] TISSUE SPECIFICITY: Expressed in leaf meristem and at points of cauline leaf attachments on the primary stem. Expressed at low levels in siliques. {ECO:0000269|PubMed:17401635}.,TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17401635}. locus:2037273;,locus:2016487;,locus:2037248; AT1G75120,AT1G19360,AT1G75110 Nucleotide-diphospho-sugar transferase Glycosyltransferase (EC 2.4.2.-) Q6ZIQ4 Q6ZIQ4_ORYSJ Os07g0587100 OJ1047_C01.5 OSNPB_070587100 ENOG411DQ3A NPC6 Q8H965 NPC6_ARATH Non-specific phospholipase C6 (EC 3.1.-.-) ARA:AT3G48610-MONOMER; Glycerophospholipid metabolism (00564),Ether lipid metabolism (00565),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.-.- 57911 Non-specific phospholipase C6 (EC 3.1.-.-) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; phospholipid catabolic process [GO:0009395] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:20507939}. locus:2114470; AT3G48610 phospholipase Os01g0102000 protein (Phospholipase-like) Q655M2 Q655M2_ORYSJ Os01g0102000 OsJ_00017 OSNPB_010102000 P0672D08.27 ENOG411DQ3B NFD5 Q8LEZ4,Q940Z1 NFD5_ARATH,PPR51_ARATH Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial,Pentatricopeptide repeat-containing protein At1g19525 DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. Male and female gametophyte defective; Rare embryo defective (inferred)-G. Drews-2006 FUNCTION: Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus. {ECO:0000269|PubMed:16698901}. 43110,35253 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial,Pentatricopeptide repeat-containing protein At1g19525 mitochondrion [GO:0005739]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2016402; AT1G19520,AT1G19525 Pentatricopeptide repeat-containing protein Os02g0611400 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J033033O21, full insert sequence) Q6K643 Q6K643_ORYSJ Os02g0611400 Os02g0611400 OJ1004_A05.9 OJ1476_F05.35 OsJ_07494 OSNPB_020611400 ENOG411DQ3C Q9ZVL6 U603_ARATH UPF0603 protein At1g54780, chloroplastic (Thylakoid lumen 18.3 kDa protein) 3.1.3.2; 31139 UPF0603 protein At1g54780, chloroplastic (Thylakoid lumen 18.3 kDa protein) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; acid phosphatase activity [GO:0003993]; photosystem II repair [GO:0010206] locus:2199466; AT1G54780 UPF0603 protein UPF0603 protein Os05g0401100, chloroplastic Q6ATY4 U603_ORYSJ Os05g0401100 LOC_Os05g33280 OSJNBa0035J16.9 ENOG411DQ3D Q8L502,F4K2P4 Q8L502_ARATH,F4K2P4_ARATH AT5G19950 protein (Tudor domain protein (DUF1767)) (Uncharacterized protein At5g19950),Tudor domain protein (DUF1767) 48540,48355 AT5G19950 protein (Tudor domain protein (DUF1767)) (Uncharacterized protein At5g19950),Tudor domain protein (DUF1767) mitochondrion [GO:0005739] locus:2147615; AT5G19950 Domain of unknown function (DUF1767) Os01g0178100 protein Q5VRD9 Q5VRD9_ORYSJ Os01g0178100 Os01g0178100 OSNPB_010178100 P0406H10.1 P0509B06.3 ENOG411DQ3E dNK Q501D4 Q501D4_ARATH At1g72040 (Uncharacterized protein At1g72040) (p-loop containing nucleoside triphosphate hydrolases superfamily protein) ARA:AT1G72040-MONOMER;MetaCyc:AT1G72040-MONOMER; R-ATH-73614; 64605 At1g72040 (Uncharacterized protein At1g72040) (p-loop containing nucleoside triphosphate hydrolases superfamily protein) nucleus [GO:0005634]; deoxynucleoside kinase activity [GO:0019136]; hydrolase activity [GO:0016787] locus:2030367; AT1G72040 Deoxynucleoside kinase family Os01g0874100 protein,Os05g0430200 protein (Fragment) Q0JHA8,A0A0P0WMS7,A0A0N7KKU0,A0A0P0VAY9 Q0JHA8_ORYSJ,A0A0P0WMS7_ORYSJ,A0A0N7KKU0_ORYSJ,A0A0P0VAY9_ORYSJ Os01g0874100 Os01g0874100 OSNPB_010874100,Os05g0430200 OSNPB_050430200,Os01g0874100 OSNPB_010874100 ENOG411DQ3F PSB33 Q9C9I7 Q9C9I7_ARATH Rieske (2Fe-2S) domain-containing protein (Uncharacterized protein At1g71500) (Uncharacterized protein At1g71500/F26A9_12) (Uncharacterized protein F26A9.12) 31727 Rieske (2Fe-2S) domain-containing protein (Uncharacterized protein At1g71500) (Uncharacterized protein At1g71500/F26A9_12) (Uncharacterized protein F26A9.12) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; 2 iron, 2 sulfur cluster binding [GO:0051537]; nitrite reductase [NAD(P)H] activity [GO:0008942]; nitrate assimilation [GO:0042128]; photosystem II assembly [GO:0010207]; photosystem II stabilization [GO:0042549] locus:2825369; AT1G71500 Inherit from COG: nitrite reductase (nad(p)h) small subunit Os11g0242400 protein (Rieske [2Fe-2S] domain, putative) (Rieske domain containing protein, expressed) (cDNA clone:J013093A06, full insert sequence) Q53N80 Q53N80_ORYSJ LOC_Os11g13850 Os11g0242400 OsJ_33497 OSNPB_110242400 ENOG411DQ3G FTSZ2-1,FTSZ2-2 O82533,Q9LXJ0,A0A1P8AXD8,A0A1I9LSJ8 FTZ21_ARATH,FTZ22_ARATH,A0A1P8AXD8_ARATH,A0A1I9LSJ8_ARATH Cell division protein FtsZ homolog 2-1, chloroplastic (AtFtsZ2-1) (Plastid division protein FTSZ2-1),Cell division protein FtsZ homolog 2-2, chloroplastic (AtFtsZ2-2) (Plastid division protein FTSZ2-2),Tubulin/FtsZ family protein DISRUPTION PHENOTYPE: Reduced number of heterogeneous large chloroplast population (small and large plastids) due to impaired plastid division. {ECO:0000269|PubMed:18284374, ECO:0000269|PubMed:19995726}.,DISRUPTION PHENOTYPE: Slightly reduced number of large chloroplasts due to impaired plastid division. {ECO:0000269|PubMed:18284374, ECO:0000269|PubMed:19995726}. FUNCTION: Exhibits GTPase activity. Component of the plastid division machinery that forms a contractile ring at the division site. Required for plastid division in a dose-dependent manner. {ECO:0000269|PubMed:11115884, ECO:0000269|PubMed:11743110, ECO:0000269|PubMed:18284374, ECO:0000269|PubMed:19925792, ECO:0000269|PubMed:19995726, ECO:0000269|PubMed:20421292, ECO:0000269|PubMed:9836740}.,FUNCTION: Exhibits GTPase activity (By similarity). Component of the plastid division machinery that forms a contractile ring at the division site. {ECO:0000250, ECO:0000269|PubMed:18284374, ECO:0000269|PubMed:19995726}. 50722,50317,41583,37311 Cell division protein FtsZ homolog 2-1, chloroplastic (AtFtsZ2-1) (Plastid division protein FTSZ2-1),Cell division protein FtsZ homolog 2-2, chloroplastic (AtFtsZ2-2) (Plastid division protein FTSZ2-2),Tubulin/FtsZ family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein self-association [GO:0043621]; chloroplast fission [GO:0010020],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; plastid stroma [GO:0009532]; thylakoid membrane [GO:0042651]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; identical protein binding [GO:0042802]; protein self-association [GO:0043621]; chloroplast fission [GO:0010020]; chloroplast organization [GO:0009658],cytoplasm [GO:0005737]; GTP binding [GO:0005525]; GTPase activity [GO:0003924],cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2049455;,locus:2083258; AT2G36250,AT3G52750 Cell division protein ftsZ Os05g0443800 protein (Putative cell division protein FtsZ) (cDNA clone:002-111-G04, full insert sequence),Cell division protein ftsZ, putative, expressed (Os03g0646100 protein) (cDNA clone:J023101A08, full insert sequence) Q6F2N1,Q10G26 Q6F2N1_ORYSJ,Q10G26_ORYSJ Os05g0443800 OsJ_18713 OSJNBa0020H14.16 OSNPB_050443800,Os03g0646100 LOC_Os03g44420 Os03g0646100 OSNPB_030646100 ENOG411DQ3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7),Os01g0378100 protein (Fragment) Q0IMX5,A0A0P0V2S1 Q0IMX5_ORYSJ,A0A0P0V2S1_ORYSJ Os12g0530100 LOC_Os12g34524 Os12g0530100 OSNPB_120530100,Os01g0378100 OSNPB_010378100 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DQ3Y AGC1-7,AGC1-5,RHS3 Q1PFB9,Q9LTW5,F4I4F2 AGC17_ARATH,AGC15_ARATH,RHS3_ARATH Serine/threonine-protein kinase AGC1-7 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 1 member 7),Serine/threonine-protein kinase AGC1-5 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 1 member 5),Serine/threonine-protein kinase RHS3 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 1 member 6) (Protein ROOT HAIR SPECIFIC 3) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but pollen of the double mutants agc1.5 and agc1.7 is impaired in polarized growth of pollen tube. {ECO:0000269|PubMed:19144004}. Double mutant displays defects in pollen tubes. Tubes are wider and bulge out indicating a defect in polarity maintenance. Pollen tubes are also shorter. FUNCTION: Functions redudantly with AGC1-5 as signaling component in the pollen tube. Required for polarized growth of pollen tubes. {ECO:0000269|PubMed:19144004}.,FUNCTION: Functions redudantly with AGC1-7 as signaling component in the pollen tube. Required for polarized growth of pollen tubes. {ECO:0000269|PubMed:19144004}.,FUNCTION: Involved in root hair growth and morphogenesis. {ECO:0000269|PubMed:19448035}. MISCELLANEOUS: Plants over-expressing RHS3 show altered root hair morphology, such as spiral, bent or branched hairs. {ECO:0000269|PubMed:19448035}. 2.7.11.1 61069,63768,56130 Serine/threonine-protein kinase AGC1-7 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 1 member 7),Serine/threonine-protein kinase AGC1-5 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 1 member 5),Serine/threonine-protein kinase RHS3 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 1 member 6) (Protein ROOT HAIR SPECIFIC 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; regulation of growth [GO:0040008],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; pollen tube growth [GO:0009860],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; root hair cell development [GO:0080147] TISSUE SPECIFICITY: Specifically expressed in pollen grains. {ECO:0000269|PubMed:19144004}.,TISSUE SPECIFICITY: Specifically expressed in root hair cells. {ECO:0000269|PubMed:19448035}. locus:2207470;,locus:2087785;,locus:2032785; AT1G79250,AT3G12690,AT1G16440 protein kinase G11A-like Os05g0237400 protein (cDNA clone:002-121-C08, full insert sequence) (cDNA clone:J023009I16, full insert sequence),Os01g0233800 protein (cDNA clone:J023037H09, full insert sequence) Q6F344,Q0JPA1 Q6F344_ORYSJ,Q0JPA1_ORYSJ Os05g0237400 OJ1122_B08.1 OJ1384_A02.13 OSNPB_050237400,Os01g0233800 Os01g0233800 OSNPB_010233800 ENOG411DQ3Z ADCS Q8LPN3 ADCS_ARATH Aminodeoxychorismate synthase, chloroplastic (ADC synthase) (EC 2.6.1.85) (P-aminobenzoic acid synthase) (PABA synthase) (Para-aminobenzoate synthase) (Protein EMBRYO DEFFECTIVE 1997) Embryo defective; Preglobular / Globular-D. Meinke-2002 FUNCTION: Bifunctional enzyme that catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine. In the first step, a glutamine amidotransferase generates ammonia that is channelled between the binding sites of glutamine and chorismate and used along with chorismate in the second step, catalyzed by aminodeoxychorismate synthase, to produce ADC. Required for the synthesis of 4-aminobenzoate (PABA), an important component in tetrahydrofolate biosynthesis. Does not possess ADC lyase activity. {ECO:0000269|PubMed:14745019, ECO:0000269|PubMed:16466344, ECO:0000269|PubMed:20851095}. PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 4-aminobenzoate from chorismate: step 1/2. MetaCyc:AT2G28880-MONOMER; 2.6.1.85 102920 Aminodeoxychorismate synthase, chloroplastic (ADC synthase) (EC 2.6.1.85) (P-aminobenzoic acid synthase) (PABA synthase) (Para-aminobenzoate synthase) (Protein EMBRYO DEFFECTIVE 1997) chloroplast [GO:0009507]; 4-amino-4-deoxychorismate synthase activity [GO:0046820]; chorismate metabolic process [GO:0046417]; folic acid biosynthetic process [GO:0046656]; glutamine metabolic process [GO:0006541]; para-aminobenzoic acid biosynthetic process [GO:0008153]; tetrahydrofolate biosynthetic process [GO:0046654] locus:2053255; AT2G28880 synthase Probable aminodeoxychorismate synthase, chloroplastic (ADC synthase) (EC 2.6.1.85) (P-aminobenzoic acid synthase) (PABA synthase) (Para-aminobenzoate synthase),Os06g0699700 protein (Fragment) Q5Z856,A0A0N7KMN7 ADCS_ORYSJ,A0A0N7KMN7_ORYSJ ADCS Os06g0699700 LOC_Os06g48620 P0468G03.14,Os06g0699700 OSNPB_060699700 FUNCTION: Bifunctional enzyme that catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine. In the first step, a glutamine amidotransferase generates ammonia that is channelled between the binding sites of glutamine and chorismate and used along with chorismate in the second step, catalyzed by aminodeoxychorismate synthase, to produce ADC. Required for the synthesis of 4-aminobenzoate (PABA), an important component in tetrahydrofolate biosynthesis. Does not possess ADC lyase activity (By similarity). {ECO:0000250}. ENOG411DQ3P TET8 Q8S8Q6 TET8_ARATH Tetraspanin-8 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 30658 Tetraspanin-8 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; defense response to Gram-negative bacterium [GO:0050829] locus:2048982; AT2G23810 Tetraspanin family Os09g0425900 protein (Putative senescence-associated protein 5) (Senescence-associated protein-like protein) (cDNA clone:001-208-A07, full insert sequence),Os08g0443800 protein (Putative senescence-associated protein) (cDNA clone:002-169-B08, full insert sequence),Os09g0425900 protein Q84VG2,Q6Z8Q8,A0A0P0XN52 Q84VG2_ORYSJ,Q6Z8Q8_ORYSJ,A0A0P0XN52_ORYSJ OJ1299_A11.16-1 Os09g0425900 OsJ_29427 OSNPB_090425900,Os08g0443800 OSNPB_080443800 P0708B04.21,Os09g0425900 OSNPB_090425900 ENOG411DQ3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os03g0566700 protein (Fragment) A0A0P0VZG0 A0A0P0VZG0_ORYSJ Os03g0566700 OSNPB_030566700 ENOG411DQ3R PRMT11 Q9SU94 ANM11_ARATH Protein arginine N-methyltransferase 1.1 (AtPRMT11) (EC 2.1.1.319) (Arginine methyltransferase pam1) (Histone-arginine N-methyltransferase PRMT11) DISRUPTION PHENOTYPE: Reduced levels of proteins with asymmetrically dimethylated arginines. Altered leaf morphology and development (curled leaves), multiple rosettes with an increased number of leaves, delayed flowering, disturbed inflorescence morphology, increased sterility. {ECO:0000269|PubMed:17711414}. FUNCTION: Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain. Type I arginine methyltransferase active on both histones and non-histone proteins. Required for leaves and flowers development. Mediates the methylation of MBD7 and MED36A. {ECO:0000269|PubMed:17666011, ECO:0000269|PubMed:17711414}. R-ATH-3214858; 2.1.1.319 43894 Protein arginine N-methyltransferase 1.1 (AtPRMT11) (EC 2.1.1.319) (Arginine methyltransferase pam1) (Histone-arginine N-methyltransferase PRMT11) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; histone-arginine N-methyltransferase activity [GO:0008469]; protein-arginine N-methyltransferase activity [GO:0016274]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2134328; AT4G29510 Protein arginine n-methyltransferase Probable protein arginine N-methyltransferase 1 (EC 2.1.1.-),Os09g0359800 protein (Fragment) Q0J2C6,A0A0P0XLV3 ANM1_ORYSJ,A0A0P0XLV3_ORYSJ PRMT1 Os09g0359800 LOC_Os09g19560 OsJ_027926 P0711F01.27-1,Os09g0359800 OSNPB_090359800 FUNCTION: Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). {ECO:0000250}. ENOG411DQ3S NRP1,NRP2 Q9CA59,Q8LC68 NRP1_ARATH,NRP2_ARATH NAP1-related protein 1 (Nucleosome/chromatin assembly factor group A6) (Protein SET homolog 1),NAP1-related protein 2 (Nucleosome/chromatin assembly factor group A5) (Protein SET homolog 2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17122067, ECO:0000269|PubMed:22534127}. mutants did not show any phenotype under in vitro culture and greenhouse growth conditions.,Double mutant plants showed a short-root phenotype: roots grew like the wild-type roots until 6 d after germination (DAG). However after 7 DAG the elongation of the double mutant roots was dramatically reduced compared with the wild-type roots. The aerial organs (leaves rosettes inflorescences flowers fruits and embryos) developed normally in the double mutant plants. FUNCTION: Acts as histone H2A/H2B chaperone in nucleosome assembly, playing a critical role for the correct expression of genes involved in root proliferation and patterning. Required with NRP2 for the maintenance of cell proliferation and differentiation in postembryonic root growth. Involved in both intramolecular and intermolecular somatic homologous recombination. {ECO:0000269|PubMed:17122067, ECO:0000269|PubMed:19704743, ECO:0000269|PubMed:22534127}.,FUNCTION: Acts as histone H2A/H2B chaperone in nucleosome assembly, playing a critical role for the correct expression of genes involved in root proliferation and patterning. Required with NRP1 for the maintenance of cell proliferation and differentiation in postembryonic root growth. Involved in both intramolecular and intermolecular somatic homologous recombination. {ECO:0000269|PubMed:17122067, ECO:0000269|PubMed:19704743, ECO:0000269|PubMed:22534127}. MISCELLANEOUS: Double mutant nrp1-nrp2 shows arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips resulting in a short-root phenotype (PubMed:17122067). Double mutant nrp1-nrp2 also displays hypersensitive response to DNA damage (PubMed:17122067) and impaired somatic homologous recombination (PubMed:22534127). {ECO:0000305|PubMed:17122067, ECO:0000305|PubMed:22534127}. 29416,29354 NAP1-related protein 1 (Nucleosome/chromatin assembly factor group A6) (Protein SET homolog 1),NAP1-related protein 2 (Nucleosome/chromatin assembly factor group A5) (Protein SET homolog 2) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; histone binding [GO:0042393]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; response to cadmium ion [GO:0046686]; somatic cell DNA recombination [GO:0016444],cytoplasm [GO:0005737]; nucleus [GO:0005634]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17122067}. locus:2019075;,locus:2034995; AT1G74560,AT1G18800 Nucleosome chromatin assembly NAP1-related protein 2 (Protein SET homolog 2) Q69JW2 NRP2_ORYSJ Os02g0576700 LOC_Os02g36710 B1342F01.10 FUNCTION: Acts as histone H2A/H2B chaperone in nucleosome assembly. {ECO:0000250}. ENOG411DQ3T ETG1 Q501D5 MCMBP_ARATH Mini-chromosome maintenance complex-binding protein (MCM-BP) (MCM-binding protein) (Protein E2F TARGET GENE 1) DISRUPTION PHENOTYPE: Serrated leaves due to cell cycle inhibition and to a stringent late G2 cell cycle arrest. The leaf blade area is almost normal while the average abaxial pavement cell area increases significantly in the mutant plants, accompanied with a decrease in cell number per leaf. At the bolting stage, younger leaves display a slightly elongated and serrated leaf phenotype. In addition, the root growth rate of the mutant plants is significantly reduced. {ECO:0000269|PubMed:18528439}. Increased endoreduplication in leaf tissues. Increased number of abaxial pavement cells. Leaves slightly elongated and serrated.Reduced cell numbers with a corresponding increase in cell size. Serrated leaves-L. De Veylder-2008 FUNCTION: Associated component of the MCM complex that acts as a regulator of DNA replication. Binds to the MCM complex during late S phase and may act by promoting the disassembly of the MCM complex from chromatin. Required for sister chromatid cohesion. {ECO:0000269|PubMed:18528439, ECO:0000269|PubMed:20090939}. 65755 Mini-chromosome maintenance complex-binding protein (MCM-BP) (MCM-binding protein) (Protein E2F TARGET GENE 1) chloroplast envelope [GO:0009941]; MCM complex [GO:0042555]; nuclear chromatin [GO:0000790]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; cell division [GO:0051301]; DNA replication [GO:0006260]; DNA-dependent DNA replication [GO:0006261]; postreplication repair [GO:0006301]; sister chromatid cohesion [GO:0007062] locus:2061833; AT2G40550 Pfam:DUF2044 Os01g0166800 protein (cDNA clone:J033067O18, full insert sequence) (cDNA clone:J033068H14, full insert sequence) Q5VQH6 Q5VQH6_ORYSJ Os01g0166800 OSNPB_010166800 P0701D05.25 ENOG411DQ3U SDH2-1,SDH2-2,SDH2-3 Q8LBZ7,Q8LB02,Q9FJP9,A0A1P8BFU4,A0A1P8BF67 SDHB1_ARATH,SDHB2_ARATH,SDHB3_ARATH,A0A1P8BFU4_ARATH,A0A1P8BF67_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (EC 1.3.5.1),Succinate dehydrogenase 2-3 Low germination rate-X. Jordana-2009 FUNCTION: Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). {ECO:0000250}.,FUNCTION: Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). {ECO:0000256|RuleBase:RU361237}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; fumarate from succinate (eukaryal route): step 1/1. {ECO:0000305}.,PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; fumarate from succinate (eukaryal route): step 1/1. {ECO:0000256|RuleBase:RU361237}. MetaCyc:AT5G40650-MONOMER; 1.3.5.1; 1.3.5.1 31171,31141,34983,24639,28120 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (EC 1.3.5.1),Succinate dehydrogenase 2-3 mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; succinate dehydrogenase complex [GO:0045281]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 3 iron, 4 sulfur cluster binding [GO:0051538]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; succinate dehydrogenase activity [GO:0000104]; zinc ion binding [GO:0008270]; aerobic respiration [GO:0009060]; mitochondrial electron transport, succinate to ubiquinone [GO:0006121]; respiratory electron transport chain [GO:0022904]; tricarboxylic acid cycle [GO:0006099],mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; succinate dehydrogenase complex [GO:0045281]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 3 iron, 4 sulfur cluster binding [GO:0051538]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; succinate dehydrogenase activity [GO:0000104]; zinc ion binding [GO:0008270]; aerobic respiration [GO:0009060]; mitochondrial electron transport, succinate to ubiquinone [GO:0006121]; respiratory electron transport chain [GO:0022904]; tricarboxylic acid cycle [GO:0006099],mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; succinate dehydrogenase complex [GO:0045281]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 3 iron, 4 sulfur cluster binding [GO:0051538]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; succinate dehydrogenase activity [GO:0000104]; aerobic respiration [GO:0009060]; mitochondrial electron transport, succinate to ubiquinone [GO:0006121]; respiratory electron transport chain [GO:0022904]; tricarboxylic acid cycle [GO:0006099],mitochondrial inner membrane [GO:0005743]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 3 iron, 4 sulfur cluster binding [GO:0051538]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; tricarboxylic acid cycle [GO:0006099],2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; oxidoreductase activity [GO:0016491]; tricarboxylic acid cycle [GO:0006099] DEVELOPMENTAL STAGE: Expressed in floral meristems and sex organ primordia at early stages of development. Later expressed in anthers, particularly in the tapetum, pollen mother cells, and microspores. {ECO:0000269|PubMed:15563621}.,DEVELOPMENTAL STAGE: Expressed during seed development. Detected during seed maturation and decreased during germination. {ECO:0000269|PubMed:16249327}. TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in flowers and inflorescences. {ECO:0000269|PubMed:11442063, ECO:0000269|PubMed:15563621}.,TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in flowers, inflorescences and root tips. {ECO:0000269|PubMed:11442063, ECO:0000269|PubMed:15563621}. locus:2086716;,locus:2168818;,locus:504954878; AT3G27380,AT5G40650,AT5G65165 succinate dehydrogenase Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip),Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (EC 1.3.5.1) Q6H4G3,Q9S827,Q9S7D3 SDHB2_ORYSJ,SDHB1_ORYSJ,Q9S7D3_ORYSJ SDH2-2 Os09g0370300 LOC_Os09g20440 B1168F12.7,SDH2-1 Os08g0120000 LOC_Os08g02640 OJ1005_B05.29-1,rps14 OJ1005_B05.29-2 Os08g0120000 OSNPB_080120000 FUNCTION: Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). {ECO:0000250|UniProtKB:Q8LBZ7}.,FUNCTION: Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). {ECO:0000256|RuleBase:RU361237}. ENOG411DQ3V ROPGEF1,ROPGEF5,ROPGEF7 Q93ZY2,F4K295,Q9LZN0,A0A1R7T3I0 ROGF1_ARATH,ROGF5_ARATH,ROGF7_ARATH,A0A1R7T3I0_ARATH Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1),Rop guanine nucleotide exchange factor 5 (AtRopGEF5) (Rho of plants guanine nucleotide exchange factor 5),Rop guanine nucleotide exchange factor 7 (AtRopGEF7) (Rho of plants guanine nucleotide exchange factor 7),ROP guanine nucleotide exchange factor 5 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22500990}. FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. Acts downstream of PRK2 in the control of polarized pollen tube growth by activating ARAC11/ROP1. In association with ROPGEF4, acts as specific regulator of ARAC10/ROP11 function in ABA-mediated stomatal closure. May play a role in the Rac/Rop-signaling pathway that controls ROS-mediated root hair development. {ECO:0000269|PubMed:15980860, ECO:0000269|PubMed:16415208, ECO:0000269|PubMed:22500990, ECO:0000269|PubMed:23024212}.,FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. {ECO:0000250}.,FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. In postembryonic roots, modulates root stem cell maintenance by regulating the expression of PLT1 and PLT2, which are key transcription factors that mediate the patterning of the root stem cell niche. May connect RopGEF-regulated Rac/Rop signaling and auxin-dependent PLT-regulated root pattern formation. {ECO:0000269|PubMed:21828289}. MISCELLANEOUS: Plants overexpressing ROPGEF1 or ROPGEF4 are relatively insensitive to ABA-induced stomatal closure and become severely wilted during drought stress. A similar phenotype is observed in plants expressing a constitutively active ARAC10/ROP11 (PubMed:22500990). {ECO:0000305|PubMed:22500990}.,MISCELLANEOUS: Plants silencing ROPGEF7 show defects in embryo patterning and maintenance of the quiescent center (QC), and postembryonic loss of root stem cell population. {ECO:0000305|PubMed:22984069}. 60848,68465,61753,55356 Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1),Rop guanine nucleotide exchange factor 5 (AtRopGEF5) (Rho of plants guanine nucleotide exchange factor 5),Rop guanine nucleotide exchange factor 7 (AtRopGEF7) (Rho of plants guanine nucleotide exchange factor 7),ROP guanine nucleotide exchange factor 5 apical plasma membrane [GO:0016324]; cytosol [GO:0005829]; Rho guanyl-nucleotide exchange factor activity [GO:0005089]; pollen tube growth [GO:0009860]; regulation of pollen tube growth [GO:0080092],Rho guanyl-nucleotide exchange factor activity [GO:0005089],cytosol [GO:0005829]; plasma membrane [GO:0005886]; Rho guanyl-nucleotide exchange factor activity [GO:0005089] DEVELOPMENTAL STAGE: During embryogenesis, specifically expressed in the precursor cells of the quiescent center (QC) at the heart, torpedo, bent-cotyledon, and mature embryo stages. At the seedling stage, expressed in the QC and vascular bundles of root differentiated zones and lateral root primordia. Expressed in the vasculature of hypocotyls, and meristemoids and guard cells of cotyledons. {ECO:0000269|PubMed:21828289}. TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, stems, sepals, petals, anthers, pollen grains, stigmas and siliques. {ECO:0000269|PubMed:16415208, ECO:0000269|PubMed:22500990}. locus:2121828;,locus:2153684;,locus:2185153; AT4G38430,AT5G05940,AT5G02010 rop guanine nucleotide exchange factor Os09g0544800 protein (cDNA clone:001-124-B07, full insert sequence),Os05g0454200 protein,Os01g0849100 protein Q0IZW9,Q6I638,Q5N780 Q0IZW9_ORYSJ,Q6I638_ORYSJ,Q5N780_ORYSJ Os09g0544800 Os09g0544800 OsJ_17735 OSNPB_090544800,Os05g0454200 Os05g0454200 OJ1126_D01.12 OsJ_18767 OSNPB_050454200,Os01g0849100 Os01g0849100 OsJ_04082 OSNPB_010849100 P0005H10.39 ENOG411DQ3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Asparaginase NA NA NA NA NA NA NA ENOG411E0YS NHX4 Q8S397 NHX4_ARATH Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4) (NHE-4) Sensitive to potassium starvation-H. Zhang-2010 FUNCTION: May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. R-ATH-425986; 58872 Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4) (NHE-4) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; potassium:proton antiporter activity [GO:0015386]; sodium ion transmembrane transporter activity [GO:0015081]; sodium:proton antiporter activity [GO:0015385]; potassium ion homeostasis [GO:0055075]; potassium ion transmembrane transport [GO:0071805]; regulation of intracellular pH [GO:0051453]; response to salt stress [GO:0009651]; sodium ion import across plasma membrane [GO:0098719] TISSUE SPECIFICITY: Expressed at very low levels in roots and shoots. {ECO:0000269|PubMed:12047628}. locus:2173972; AT5G55470 Sodium hydrogen exchanger Os06g0318500 protein A0A0P0WVY4 A0A0P0WVY4_ORYSJ Os06g0318500 OSNPB_060318500 ENOG411E6VZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DUZY SSP4b,SSP4 A0A1P8B5P3,Q8VY28,F4JQR6,F4JQR8,F4KHG9 A0A1P8B5P3_ARATH,Q8VY28_ARATH,F4JQR6_ARATH,F4JQR8_ARATH,F4KHG9_ARATH SCP1-like small phosphatase 4b,SCP1-like small phosphatase 4 (Uncharacterized protein At5g46410),SCP1-like small phosphatase 4 50567,51276,51171,50694,51550 SCP1-like small phosphatase 4b,SCP1-like small phosphatase 4 (Uncharacterized protein At5g46410),SCP1-like small phosphatase 4 phosphatase activity [GO:0016791],nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; protein dephosphorylation [GO:0006470] locus:2117661;,locus:2170458; AT5G46410,AT4G18140 NLI interacting Os01g0629400 protein (Fragment) Q0JL24,A0A0P0V5J1 Q0JL24_ORYSJ,A0A0P0V5J1_ORYSJ Os01g0629400 Os01g0629400 OSNPB_010629400,Os01g0629400 OSNPB_010629400 ENOG411DUZX ARP6 Q8LGE3 ARP6_ARATH Actin-related protein 6 (Protein EARLY IN SHORT DAYS 1) (Protein SUPPRESSOR OF FRIGIDA 3) DISRUPTION PHENOTYPE: Early flowering, leaf serration, production of extra petals and weak apical dominance. {ECO:0000269|PubMed:17220196}. Early flowering reduced fertility indehiscent anthersincrease petals small carpels. In short days leaves are smaller with serrated leaves. In long days the leaves are smaller.,Under long days suf3 showed much earlier flowering than wild-type Col:FRISF2 and similar flowering time to Col which has a fri FLC genotype. Delay in flowering under short days similar to Col. Much stronger acceleration of flowering by vernalization than Col. Consistently produced serrated leaves starting from the sixth leaf and approximately twice as many coflorescence shoots as Col. Occasionally secondary shoot apices converted to terminal flowers after producing racemic inflorescences as well as produced flowers with extra petals. Slightly longer hypocotyl; Short inflorescence stems; Small, curled leaves with serrated margins; Small flowers; Increased sepal and petal numbers; Reduced fertility; Early flowering independent of photoperiod-J. Jarillo-2006 FUNCTION: Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. Binds to the promoter region of FLC chromatin. Required for the activation of FLC and FLC/MAF genes expression to levels that inhibit flowering, through both histone H3 and H4 acetylation and methylation mechanisms. Involved in several developmental processes including organization of plant organs, leaves formation, flowering time repression, and fertility. Modulates photoperiod-dependent epidermal leaves cell development; promotes cell division in long days, and cell expansion/division in short days. May be involved in the regulation of pathogenesis-related proteins (PRs). {ECO:0000269|PubMed:16141450, ECO:0000269|PubMed:16155178, ECO:0000269|PubMed:16495307, ECO:0000269|PubMed:17220196, ECO:0000269|PubMed:17470967, ECO:0000269|PubMed:17988222}. 46944 Actin-related protein 6 (Protein EARLY IN SHORT DAYS 1) (Protein SUPPRESSOR OF FRIGIDA 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; structural constituent of cytoskeleton [GO:0005200]; actin filament-based process [GO:0030029]; cell proliferation [GO:0008283]; chromatin remodeling [GO:0006338]; covalent chromatin modification [GO:0016569]; defense response [GO:0006952]; negative regulation of flower development [GO:0009910]; regulation of transcription, DNA-templated [GO:0006355]; response to osmotic stress [GO:0006970]; response to temperature stimulus [GO:0009266]; seed germination [GO:0009845] TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in seedlings, shoot apex, stems, siliques, seeds, and roots (at protein level). {ECO:0000269|PubMed:11891255, ECO:0000269|PubMed:16141450, ECO:0000269|PubMed:16155178, ECO:0000269|PubMed:16495307}. locus:2102202; AT3G33520 Actin-related protein Actin-related protein 6 Q5NBI2 ARP6_ORYSJ ARP6 Os01g0269900 LOC_Os01g16414 OsJ_001201 P0667A10.19 FUNCTION: Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes by chromatin remodeling. Involved in several developmental processes. May be involved in the regulation of pathogenesis-related proteins (PRs) (By similarity). {ECO:0000250}. ENOG411DUZS ECT8 A0A1P8ARJ2,Q9FPE7 A0A1P8ARJ2_ARATH,Q9FPE7_ARATH Evolutionarily conserved C-terminal region 8,Evolutionarily conserved C-terminal region 8 (Uncharacterized protein At1g79270) 57771,59549 Evolutionarily conserved C-terminal region 8,Evolutionarily conserved C-terminal region 8 (Uncharacterized protein At1g79270) RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:2207405; AT1G79270 YT521-B-like domain Os01g0679900 protein (Rubisco subunit binding-protein beta subunit-like) (cDNA clone:J013046L18, full insert sequence),Os01g0679900 protein (Rubisco subunit binding-protein beta subunit-like),Os01g0679900 protein (Fragment) Q5QM96,Q5QM95,A0A0P0V6I8 Q5QM96_ORYSJ,Q5QM95_ORYSJ,A0A0P0V6I8_ORYSJ B1144G04.45-2 Os01g0679900 OSNPB_010679900,B1144G04.45-1 Os01g0679900 OSNPB_010679900,Os01g0679900 OSNPB_010679900 ENOG411DUZP GAMT2 Q5XF78 GAMT2_ARATH Gibberellic acid methyltransferase 2 (Gibberellin A(4) carboxyl methyltransferase) (EC 2.1.1.276) DISRUPTION PHENOTYPE: No visible phenotype, even in gamt1 and gamt2 double mutants. {ECO:0000269|PubMed:17220201}. Higher levels of bioactive GA4 and GA1 in the siliques of mutant compared to wild type.,No visible phenotype.,Whereas the germination of wild type seeds was completely inhibited by 30 ;M ancymidol (inhibitor of GA biosynthesis) 60% of the mutant seeds still germinated.,Whereas the germination of wild type seeds was completely inhibited by 30 ;M ancymidol (inhibitor of GA biosynthesis) some of the mutant seeds still germinated. FUNCTION: Methylates the carboxyl group of several gibberellins (GAs). Substrate preference is GA4 > GA34 > GA9 > GA3 > GA1 > GA51 > GA20. No activity with diterpenes abietic acid and ent-kaurenoic acid. {ECO:0000269|PubMed:17220201}. MISCELLANEOUS: Overexpression of GAMT2 results in dwarf phenotype. {ECO:0000305|PubMed:17220201}. MetaCyc:AT5G56300-MONOMER; 2.1.1.276; 2.1.1.276 43349 Gibberellic acid methyltransferase 2 (Gibberellin A(4) carboxyl methyltransferase) (EC 2.1.1.276) gibberellin A4 carboxyl methyltransferase activity [GO:0102118]; gibberellin carboxyl-O-methyltransferase activity [GO:0010341]; metal ion binding [GO:0046872]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757] DEVELOPMENTAL STAGE: Expression begins at early stages of silique development, peaks in the second half of this process and decreases after the start of desiccation. {ECO:0000269|PubMed:17220201}. TISSUE SPECIFICITY: Expressed in siliques and germinating seeds. Not detected in leaves, stems, flowers and roots. {ECO:0000269|PubMed:17220201}. locus:2161008; AT5G56300 SAM dependent carboxyl methyltransferase OSJNBa0087O24.12 protein (Os04g0666100 protein),Os04g0666366 protein Q7XPJ8,A0A0P0WG49 Q7XPJ8_ORYSJ,A0A0P0WG49_ORYSJ Os04g0666100 OsJ_16538 OSJNBa0087O24.12 OSNPB_040666100,Os04g0666366 OSNPB_040666366 ENOG411DUZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: A kinase (PRKA) anchor protein Os07g0586000 protein (cDNA clone:J023012B09, full insert sequence),Os01g0593100 protein B7EG21,A0A0P0V4R4 B7EG21_ORYSJ,A0A0P0V4R4_ORYSJ Os07g0586000 OSNPB_070586000,Os01g0593100 OSNPB_010593100 ENOG411DUZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rho GDP-dissociation inhibitor Os01g0913600 protein (Putative Rac GDP-dissociation inhibitor 1) (cDNA clone:J023112G04, full insert sequence) Q8S081 Q8S081_ORYSJ Os01g0913600 OsJ_04519 OSNPB_010913600 P0470A12.46 ENOG411DUZJ SDH1-1,SDH1-2 O82663,Q9ZPX5 SDHA1_ARATH,SDHA2_ARATH Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial (EC 1.3.5.1) (Flavoprotein subunit 1 of complex II) (FP),Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial (EC 1.3.5.1) (Flavoprotein subunit 2 of complex II) (FP) Complete male gametophyte defective; Female gametophyte defective-X. Jordana-2007 FUNCTION: Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). {ECO:0000250|UniProtKB:P31040}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; fumarate from succinate (eukaryal route): step 1/1. {ECO:0000250|UniProtKB:P31040}. MetaCyc:AT5G66760-MONOMER; 1.3.5.1 69656,69363 Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial (EC 1.3.5.1) (Flavoprotein subunit 1 of complex II) (FP),Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial (EC 1.3.5.1) (Flavoprotein subunit 2 of complex II) (FP) cell wall [GO:0005618]; mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; succinate dehydrogenase activity [GO:0000104]; anaerobic respiration [GO:0009061]; mitochondrial electron transport, succinate to ubiquinone [GO:0006121]; tricarboxylic acid cycle [GO:0006099],mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; succinate dehydrogenase activity [GO:0000104]; anaerobic respiration [GO:0009061]; mitochondrial electron transport, succinate to ubiquinone [GO:0006121]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in flowers and inflorescences. {ECO:0000269|PubMed:12374303}.,TISSUE SPECIFICITY: Expressed at a low level. {ECO:0000269|PubMed:12374303}. locus:2173654;,locus:2062146; AT5G66760,AT2G18450 succinate dehydrogenase Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3.5.1) (Flavoprotein subunit of complex II) (FP),Os07g0134800 protein (Fragment) Q6ZDY8,A0A0P0X2D8 SDHA_ORYSJ,A0A0P0X2D8_ORYSJ SDH1 Os07g0134800 LOC_Os07g04240 P0507H12.27,Os07g0134800 OSNPB_070134800 FUNCTION: Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). {ECO:0000250|UniProtKB:P31040}. ENOG411DUZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os12g0616500 protein A0A0P0YC61 A0A0P0YC61_ORYSJ Os12g0616500 OSNPB_120616500 ENOG411DUZC UREG O64700,F4IHW4 UREG_ARATH,F4IHW4_ARATH Urease accessory protein G (AtUREG),Urease accessory protein G DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants cannot grow on medium with urea as the sole source of nitrogen. {ECO:0000269|PubMed:16244137}. No visible phenotype. Unable to sustain growth on urea as sole nitrogen source. No urease activity detected. Unable to use urea as primary nitrogen source-T. Romeis-2005 FUNCTION: Required for the maturation and activation of urease via the functional incorporation of the urease nickel metallocenter. {ECO:0000269|PubMed:16244137}. 30083,30225 Urease accessory protein G (AtUREG),Urease accessory protein G GTP binding [GO:0005525]; GTPase activity [GO:0003924]; nickel cation binding [GO:0016151]; nitrogen compound metabolic process [GO:0006807]; positive regulation of catalytic activity [GO:0043085],membrane [GO:0016020]; GTPase activity [GO:0003924]; nickel cation binding [GO:0016151]; nitrogen compound metabolic process [GO:0006807]; positive regulation of urease activity [GO:1905182] locus:2040894; AT2G34470 urease accessory protein Urease accessory protein G (AtUREG) Q6AUF3 UREG_ORYSJ UREG Os05g0565200 LOC_Os05g49050 OsJ_19563 OSJNBb0053D02.18 FUNCTION: Required for the maturation and activation of urease via the functional incorporation of the urease nickel metallocenter. {ECO:0000250}. ENOG411DUZB PCMP-H61,PCMP-H88 Q9FJY7,Q9FG16 PP449_ARATH,PP367_ARATH Pentatricopeptide repeat-containing protein At5g66520,Pentatricopeptide repeat-containing protein At5g06540 70716,70495 Pentatricopeptide repeat-containing protein At5g66520,Pentatricopeptide repeat-containing protein At5g06540 chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA modification [GO:1900865]; cytidine to uridine editing [GO:0016554],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2154855;,locus:2144143; AT5G66520,AT5G06540 Pentatricopeptide repeat-containing protein Os06g0231400 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os08g0249600 protein (Fragment) Q67X36,A0A0N7KPJ0 Q67X36_ORYSJ,A0A0N7KPJ0_ORYSJ Os06g0231400 OsJ_20697 OSNPB_060231400 P0525F01.38,Os08g0249600 OSNPB_080249600 ENOG411DUZ9 Q08A69,F4I2P7 Q08A69_ARATH,F4I2P7_ARATH Alpha/beta-Hydrolases superfamily protein (At1g10040),Alpha/beta-Hydrolases superfamily protein 46793,46525 Alpha/beta-Hydrolases superfamily protein (At1g10040),Alpha/beta-Hydrolases superfamily protein carboxylic ester hydrolase activity [GO:0052689]; cellular lipid metabolic process [GO:0044255],hydrolase activity [GO:0016787] locus:2201901; AT1G10040 Putative serine esterase (DUF676) NA NA NA NA NA NA NA ENOG411DUZ8 TIC100,emb1211 Q8LPR8,A0A1P8BBB7,F4K9Z1 TI100_ARATH,A0A1P8BBB7_ARATH,F4K9Z1_ARATH Protein TIC 100 (Protein EMBRYO DEFECTIVE 1211) (Translocon at the inner envelope membrane of chloroplasts 100) (AtTIC100),MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein DISRUPTION PHENOTYPE: Severe defects during embryogenesis, producing abnormal embryos and thereby leading to a lethality of young seedlings. {ECO:0000269|PubMed:20738804, ECO:0000269|PubMed:23372012}. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope (PubMed:23372012). Plays an important role during embryogenesis and chloroplast biogenesis (PubMed:20738804). {ECO:0000269|PubMed:20738804, ECO:0000269|PubMed:23372012}. 99954,70842,85948 Protein TIC 100 (Protein EMBRYO DEFECTIVE 1211) (Translocon at the inner envelope membrane of chloroplasts 100) (AtTIC100),MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536]; protein transporter activity [GO:0008565]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; protein import into chloroplast stroma [GO:0045037] DEVELOPMENTAL STAGE: Expressed in developing emryo. {ECO:0000269|PubMed:20738804}. TISSUE SPECIFICITY: Preferentially expressed in ovules, and moderately expressed in leaves and siliques. {ECO:0000269|PubMed:20738804}. locus:2162469; AT5G22640 MORN NA NA NA NA NA NA NA ENOG411DUZ0 GMII Q9LFR0 GMAN2_ARATH Alpha-mannosidase 2 (EC 3.2.1.114) (Golgi alpha-mannosidase II) (AMan II) (AtGMII) (Man II) (Protein hybrid glycosylation 1) DISRUPTION PHENOTYPE: Predominant presence of unprocessed hybrid N-glycans (PubMed:16460512). Reduced levels of glycoprotein N-glycans (PubMed:21478158). Increased sensitivity to salt stress (PubMed:18408158). {ECO:0000269|PubMed:16460512, ECO:0000269|PubMed:18408158, ECO:0000269|PubMed:21478158}. Defective in the formation of hybrid and complex N-glycans. Viable and fertile and do not show any obvious phenotype under standard growth conditions. FUNCTION: Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway. Converts GlcNAcMan(5)GlcNAc(2) (Man5Gn) into GlcNAcMan(3)GlcNAc(2) (MGn) by sequential removal of two alpha1,6- and alpha1,3-linked mannose residues from the alpha1,6-mannose branch of the substrate. To a lesser extent, also able to cleave beta1,2-xylosylated Man5Gn-glycopeptide (Man5GnX-GP) and pyridylaminated substrates Man5Gn-PA and Man5GnX-PA, but not active toward Man5-glycopeptide (PubMed:16460512, PubMed:21478158). Required for resistance to salt stress (PubMed:18408158). {ECO:0000269|PubMed:16460512, ECO:0000269|PubMed:18408158, ECO:0000269|PubMed:21478158}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000269|PubMed:16460512, ECO:0000269|PubMed:21478158}. ARA:AT5G14950-MONOMER; R-ATH-975578; 3.2.1.114; 3.2.1.114 134726 Alpha-mannosidase 2 (EC 3.2.1.114) (Golgi alpha-mannosidase II) (AMan II) (AtGMII) (Man II) (Protein hybrid glycosylation 1) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity [GO:0004572]; metal ion binding [GO:0046872]; hyperosmotic salinity response [GO:0042538]; mannose metabolic process [GO:0006013]; N-glycan processing [GO:0006491]; protein deglycosylation [GO:0006517]; protein N-linked glycosylation [GO:0006487] locus:2147855; AT5G14950 alpha-mannosidase Alpha-mannosidase (EC 3.2.1.-) A0A0P0WUK6 A0A0P0WUK6_ORYSJ Os06g0245700 OSNPB_060245700 ENOG411DUZ7 ndhI P56755 NDHI_ARATH NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01351}. ARA:ATCG01090-MONOMER; 1.6.5.- 20086 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; 4 iron, 4 sulfur cluster binding [GO:0051539]; metal ion binding [GO:0046872]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; NADPH dehydrogenase activity [GO:0003959]; quinone binding [GO:0048038]; photosynthesis [GO:0015979] locus:504954732; ATCG01090 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) P0C386 NDHI_ORYSJ ndhI frxB LOC_Osp1g00950 Nip173 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01351}. ENOG411DUZ6 O80832,Q9M2D2,A0A1P8AXP7,A0A1P8AXN9,A0A1I9LTI1,A0A1I9LTI2,A0A1I9LTI0 YU87_ARATH,YU88_ARATH,A0A1P8AXP7_ARATH,A0A1P8AXN9_ARATH,A0A1I9LTI1_ARATH,A0A1I9LTI2_ARATH,A0A1I9LTI0_ARATH UPF0187 protein At2g45870, chloroplastic,UPF0187 protein At3g61320, chloroplastic,Bestrophin-like protein 46280,46539,40830,35186,53448,41390,39526 UPF0187 protein At2g45870, chloroplastic,UPF0187 protein At3g61320, chloroplastic,Bestrophin-like protein chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; thylakoid membrane [GO:0042651]; regulation of photosynthesis, light reaction [GO:0042548],chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chloroplast stromal thylakoid [GO:0009533]; integral component of membrane [GO:0016021]; thylakoid membrane [GO:0042651]; voltage-gated chloride channel activity [GO:0005247]; photosynthesis, light reaction [GO:0019684]; regulation of photosynthesis, light reaction [GO:0042548]; thylakoid membrane organization [GO:0010027],integral component of membrane [GO:0016021] locus:2050740;,locus:2098881; AT2G45870,AT3G61320 UPF0187 protein At3g61320 Os03g0106000 protein (cDNA clone:001-114-B03, full insert sequence) Q8H7T9 Q8H7T9_ORYSJ LOC_Os03g01570 Os03g0106000 OsJ_09088 OSJNBa0009C08.12 OSNPB_030106000 ENOG411DUZ5 MED15A,MED15B,NRB4 F4I171,F4I169,B3H4K3,A0A1P8AQ03,A0A1P8AQ17 MD15A_ARATH,MD15B_ARATH,B3H4K3_ARATH,A0A1P8AQ03_ARATH,A0A1P8AQ17_ARATH Mediator of RNA polymerase II transcription subunit 15a,Probable mediator of RNA polymerase II transcription subunit 15b,Mediator of RNA polymerase II transcription subunit,Mediator of RNA polymerase II transcription subunit 15a-like protein FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. 146345,32658,14367,149012,150234 Mediator of RNA polymerase II transcription subunit 15a,Probable mediator of RNA polymerase II transcription subunit 15b,Mediator of RNA polymerase II transcription subunit,Mediator of RNA polymerase II transcription subunit 15a-like protein mediator complex [GO:0016592]; nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; transcription coactivator activity [GO:0003713]; positive regulation of fatty acid biosynthetic process [GO:0045723]; regulation of transcription, DNA-templated [GO:0006355]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],transcription cofactor activity [GO:0003712]; regulation of transcription, DNA-templated [GO:0006355] locus:2036154;,locus:2036139;,locus:4515102536; AT1G15780,AT1G15770,AT1G15772 NA Os08g0564800 protein (Putative CTV.22) (cDNA clone:J023088K02, full insert sequence) Q7EZK6 Q7EZK6_ORYSJ P0705A05.123 Os08g0564800 OsJ_28313 OSJNBa0044E16.7 OSNPB_080564800 ENOG411EHB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PCF11 cleavage and polyadenylation factor subunit homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EHB2 Q3E7C8 Q3E7C8_ARATH Uncharacterized protein 8439 Uncharacterized protein locus:1006230739; AT1G77885 NA NA NA NA NA NA NA NA ENOG411EHB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EHB6 Q8S8I3 Q8S8I3_ARATH At2g20835 (Predicted protein) (Uncharacterized protein At2g20835/F5H14.1) 7494 At2g20835 (Predicted protein) (Uncharacterized protein At2g20835/F5H14.1) locus:2827497; AT2G20835 NA NA NA NA NA NA NA NA ENOG411EHB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0267900 protein (Os08g0268000 protein),OSJNBa0006B20.10 protein (Os04g0437200 protein) C7J5G7,Q7XRB2 C7J5G7_ORYSJ,Q7XRB2_ORYSJ Os08g0268000 Os08g0267900 OSNPB_080268000,OSJNBa0006B20.10 Os04g0437200 OSNPB_040437200 ENOG411EHBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHBW F4JGC8,F4J311 F4JGC8_ARATH,F4J311_ARATH C2H2 and C2HC zinc fingers superfamily protein,Zinc finger (C2H2 type) family protein 26260,72765 C2H2 and C2HC zinc fingers superfamily protein,Zinc finger (C2H2 type) family protein nucleus [GO:0005634]; nucleic acid binding [GO:0003676],nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:504955363;,locus:2093807; AT4G04404,AT3G29340 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EHBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHBA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase NA NA NA NA NA NA NA ENOG411EHBI O23018 O23018_ARATH Glycine-rich protein (T1G11.8 protein) (Uncharacterized protein At1g04660) 18312 Glycine-rich protein (T1G11.8 protein) (Uncharacterized protein At1g04660) locus:2197843; AT1G04660 NA NA NA NA NA NA NA NA ENOG411EHBH A0A1P8B5J4 A0A1P8B5J4_ARATH MADS-box transcription factor-like protein 21973 MADS-box transcription factor-like protein integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EHBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP OSJNBb0096E05.15 protein (Os04g0290500 protein) Q7XRQ9 Q7XRQ9_ORYSJ OSJNBb0096E05.15 Os04g0290500 OSNPB_040290500 ENOG411E4GN SIB1 Q9LDH1 SIB1_ARATH Sigma factor binding protein 1, chloroplastic (AtsibI) (Sigma factor binding protein I) (SigA binding protein) (VQ motif-containing protein 23) (AtVQ23) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show impaired induction of some defense-related genes triggered by pathogen infection and treatments with salicylic acid (SA) and jasmonic acid (JA) (PubMed:20040062). Increased susceptibility to the necrotrophic fungal pathogen B.cinerea (PubMed:21990940). {ECO:0000269|PubMed:20040062, ECO:0000269|PubMed:21990940}. FUNCTION: Contributes to plant defense. May regulate chloroplast metabolism upon infection with pathogens such as Pseudomonas syringae (PubMed:20040062). Functions as activator of WRKY33 in plant defense against necrotrophic pathogens by stimulating the DNA-binding activity of WRKY33 (PubMed:21990940). {ECO:0000269|PubMed:20040062, ECO:0000269|PubMed:21990940}. 16862 Sigma factor binding protein 1, chloroplastic (AtsibI) (Sigma factor binding protein I) (SigA binding protein) (VQ motif-containing protein 23) (AtVQ23) chloroplast [GO:0009507]; nucleus [GO:0005634]; cellular response to light stimulus [GO:0071482]; defense response to bacterium, incompatible interaction [GO:0009816]; positive regulation of sequence-specific DNA binding transcription factor activity [GO:0051091] TISSUE SPECIFICITY: Expressed in leaves and roots, but not in flowers. {ECO:0000269|PubMed:11943170}. locus:2103580; AT3G56710 sib1 sib1 (sigma factor binding protein 1) NA NA NA NA NA NA NA ENOG411E4GB Q9LIF6 Q9LIF6_ARATH Dynein beta chain, ciliary protein (Uncharacterized protein At3g21400) (Uncharacterized protein At3g21400/MHC9_8) 21070 Dynein beta chain, ciliary protein (Uncharacterized protein At3g21400) (Uncharacterized protein At3g21400/MHC9_8) mitochondrion [GO:0005739]; mitochondrial respiratory chain complex I assembly [GO:0032981] locus:2089463; AT3G21400 NA Os12g0540700 protein (Fragment) A0A0P0YB51 A0A0P0YB51_ORYSJ Os12g0540700 OSNPB_120540700 ENOG411E4GA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 10c (OsTIFY10c) (Jasmonate ZIM domain-containing protein 8) (OsJAZ8) (OsJAZ7) Q69P94 TI10C_ORYSJ TIFY10C JAZ8 Os09g0439200 LOC_Os09g26780 OJ1344_B01.13 OsJ_29511 P0556H01.29 FUNCTION: Repressor of jasmonate (JA) responses. Acts as a repressor of JA-induced resistance to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae (Xoo) (PubMed:23104764). Regulates JA-induced accumulation of linalool at the transcriptional level of linalool synthase gene LIS. Linalool is important for resistance to bacterial blight pathogen Xoo (PubMed:23889289). {ECO:0000269|PubMed:23104764, ECO:0000269|PubMed:23889289}. MISCELLANEOUS: Plants over-expressing a truncated form of TIFY10C/JAZ8 display a jasmonate-insensitive phenotype and have altered expression of jasmonate-responsive genes. {ECO:0000269|PubMed:23104764}. ENOG411E4GF ERF034 Q8LBQ7 ERF34_ARATH Ethylene-responsive transcription factor ERF034 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 31985 Ethylene-responsive transcription factor ERF034 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2055007; AT2G44940 AP2 domain-containing transcription factor TINY NA NA NA NA NA NA NA ENOG411E4GD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0161500 protein (Fragment),Os12g0161700 protein (Fragment) A0A0P0Y779,A0A0P0Y781 A0A0P0Y779_ORYSJ,A0A0P0Y781_ORYSJ Os12g0161500 OSNPB_120161500,Os12g0161700 OSNPB_120161700 ENOG411E326 BFT Q9FIT4 BFT_ARATH Protein BROTHER of FT and TFL 1 FUNCTION: May form complexes with phosphorylated ligands by interfering with kinases and their effectors. {ECO:0000250}. R-ATH-5675221; 20008 Protein BROTHER of FT and TFL 1 cytoplasm [GO:0005737]; flower development [GO:0009908]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2174058; AT5G62040 CEN-like protein NA NA NA NA NA NA NA ENOG411E324 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0306550 protein A0A0P0VI24 A0A0P0VI24_ORYSJ Os02g0306550 OSNPB_020306550 ENOG411E325 RPS6 Q8VY91,A0A1P8AV66 RR6_ARATH,A0A1P8AV66_ARATH 30S ribosomal protein S6 alpha, chloroplastic,Translation elongation factor EF1B/ribosomal protein S6 family protein FUNCTION: Binds together with S18 to 16S ribosomal RNA. {ECO:0000250}. 22761,25460 30S ribosomal protein S6 alpha, chloroplastic,Translation elongation factor EF1B/ribosomal protein S6 family protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; ribosome [GO:0005840]; thylakoid [GO:0009579]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation elongation factor activity [GO:0003746] locus:2019489; AT1G64510 ribosomal protein S6 Os03g0843400 protein (Putative plastid ribosomal protein S6) (Ribosomal protein S6 family protein, putative, expressed) (cDNA clone:006-209-H08, full insert sequence) (cDNA clone:J023002E21, full insert sequence) Q75LD8 Q75LD8_ORYSJ OSJNBa0032G11.6 LOC_Os03g62630 Os03g0843400 OSNPB_030843400 ENOG411E321 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein light chain type 1 Dynein light chain A0A0P0VPL3 A0A0P0VPL3_ORYSJ Os02g0733001 OSNPB_020733001 ENOG411E329 NUDT16 Q9LHK1 NUD16_ARATH Nudix hydrolase 16, mitochondrial (AtNUDT16) (EC 3.6.1.-) FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}. ARA:AT3G12600-MONOMER; 3.6.1.- 20392 Nudix hydrolase 16, mitochondrial (AtNUDT16) (EC 3.6.1.-) cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2091275; AT3G12600 Nudix hydrolase NA NA NA NA NA NA NA ENOG411EK2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Insulinase (Peptidase family M16) NA NA NA NA NA NA NA ENOG411EK2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heterogeneous nuclear ribonucleoprotein NA NA NA NA NA NA NA ENOG411EK2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK2F OEP61,RHF2A B7ZWR6,Q9ZT42,A0A1P8BEK7 OEP61_ARATH,RHF2A_ARATH,A0A1P8BEK7_ARATH Outer envelope protein 61 (Tetratricopeptide repeat domain-containing protein 7),E3 ubiquitin-protein ligase RHF2A (EC 2.3.2.27) (RING-H2 finger F2a) (RING-H2 zinc finger protein RHF2a) (RING-type E3 ubiquitin transferase RHF2A),RING-H2 group F2A The rhf2a mutant does not have any visibly aberrant phenotypes but an rhf1a rhf2a double mutant reveals the role of these two proteins in gametogenesis and protein degradation.,This double mutant has shorter siliques than WT plants and lower fertility. Approximately 60% of ovules abort the megagametophytic development process at the FG1 stage. Often one of the megaspores that is supposed to degenerate remains visible in the rhf1a rhf2a megagametophyte for a prolonged period of time. Some of the mutants arrested at the two nucleate (F2) stage whereas about 30% developed normal female gametophytes that could be successfully fertilized to produce viable seed. The pollen of the double mutant is largely defective with about 50-70% nonviability compared to ~0.5% nonviability for wild type pollen. The pollen for rhf1a rhf2a mutants appears to develop normally through PMI but 30-40% of the pollen grain fail to undergo this mitotic division and then of those that did pass through another 20-30% never go through the next round of cell division (PMII). The variety of different ploidy levels measured in generative cells arrested at the PMII phase indicate that they could be blocked at the G1 S or G2. Levels of myc:KRP6 increase in the double mutant suggesting that this protein is a putative substrate of this E3 ubiquitin ligase. And many of the aberrant phenotypes observed in the double mutant can be improved when KRP6 levels are decreased by RNAi. FUNCTION: Plays a role in protein import into the endoplasmic reticulum (ER). May function as chaperone docking protein during post-translational protein translocation into the ER. Chaperone receptor mediating Hsp70-dependent protein targeting to chloroplasts. Interacts specifically with some chloroplast precursors, but not with mitochondrial precursors. Able to select precursors for delivery to the chloroplast translocase independently of Hsp70. {ECO:0000269|PubMed:21612577, ECO:0000269|PubMed:22899711}.,FUNCTION: E3 ubiquitin-protein ligase involved in the positive regulation of the gametogenesis progression. Required for the degradation of KRP6, a cyclin-dependent kinase inhibitor which accumulates during meiosis and blocks the progression of subsequent mitoses during gametophytes development. Functions in association with RHF1A. {ECO:0000269|PubMed:18552199}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 60757,41029,33426 Outer envelope protein 61 (Tetratricopeptide repeat domain-containing protein 7),E3 ubiquitin-protein ligase RHF2A (EC 2.3.2.27) (RING-H2 finger F2a) (RING-H2 zinc finger protein RHF2a) (RING-type E3 ubiquitin transferase RHF2A),RING-H2 group F2A chloroplast outer membrane [GO:0009707]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; cytosol to ER transport [GO:0046967]; protein transport [GO:0015031],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; megagametogenesis [GO:0009561]; microgametogenesis [GO:0055046]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; proteolysis involved in cellular protein catabolic process [GO:0051603]; regulation of cell cycle [GO:0051726] DEVELOPMENTAL STAGE: Expressed throughout flower development. {ECO:0000269|PubMed:18552199}. TISSUE SPECIFICITY: Ubiquitous. Highest expression in leaves and lowest in roots. {ECO:0000269|PubMed:21612577}. locus:504956437;,locus:505006626; AT5G21990,AT5G22000 Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EK23 ; P92555 M1250_ARATH Uncharacterized mitochondrial protein AtMg01250 (ORF102) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07697) is not demonstrated. 13646 Uncharacterized mitochondrial protein AtMg01250 (ORF102) mitochondrion [GO:0005739] locus:504954608; AT2G07697ATMG01250; Endonuclease/Exonuclease/phosphatase family Os01g0714200 protein,Os08g0561250 protein (Fragment),Os01g0714300 protein,Os01g0714225 protein (Fragment),Os01g0714366 protein,Os05g0354075 protein (Fragment) A0A0N7KDM2,A0A0P0XJF7,A0A0P0V7D8,A0A0P0V7C8,A0A0P0V7F8,A0A0P0WL50 A0A0N7KDM2_ORYSJ,A0A0P0XJF7_ORYSJ,A0A0P0V7D8_ORYSJ,A0A0P0V7C8_ORYSJ,A0A0P0V7F8_ORYSJ,A0A0P0WL50_ORYSJ Os01g0714200 OSNPB_010714200,Os08g0561250 OSNPB_080561250,Os01g0714300 OSNPB_010714300,Os01g0714225 OSNPB_010714225,Os01g0714366 OSNPB_010714366,Os05g0354075 OSNPB_050354075 ENOG411E32F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E32E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Binds to actin and affects the structure of the cytoskeleton. At high concentrations profilin prevents the polymerization of actin whereas it enhances it at low concentrations. By Profilin LP04,Profilin-A Q5VMJ3,Q9FUD1 PROFX_ORYSJ,PROFA_ORYSJ Os06g0152100 LOC_Os06g05880 OsJ_019338 P0529C07.32 P0710H01.44,Os10g0323600 LOC_Os10g17660 OSJNBa0065C16.11; Os10g0323900 LOC_Os10g17680 OSJNBa0065C16.14 FUNCTION: Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG (By similarity). {ECO:0000250}.,FUNCTION: Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG (By similarity). May serve as a modulator in pollen germination and pollen tube growth. {ECO:0000250}. ENOG411E32B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF827 NA NA NA NA NA NA NA ENOG411E32A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q8L532,Q8L453 Q8L532_ORYSJ,Q8L453_ORYSJ Os01g0879300 OSNPB_010879300 P0018C10.26 P0471B04.37,Os01g0879200 Os01g0879200 OSNPB_010879200 P0018C10.24 P0471B04.35 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E32H A0JQ78 A0JQ78_ARATH At3g10405 (Vacuolar acid trehalase) Defective pollen development. 23499 At3g10405 (Vacuolar acid trehalase) pollen development [GO:0009555] locus:504955888; AT3G10405 NA Os10g0545100 protein B9G1Z7 B9G1Z7_ORYSJ Os10g0545100 OsJ_28077 OSNPB_100545100 ENOG411E32I Q9LII1 Q9LII1_ARATH Nucleic acid-binding, OB-fold-like protein 24214 Nucleic acid-binding, OB-fold-like protein single-stranded DNA binding [GO:0003697] locus:2086889; AT3G18580 single-stranded DNA-binding protein Os01g0642900 protein (Single-strand DNA binding protein-like) (cDNA clone:001-122-B08, full insert sequence) (cDNA clone:J033043K18, full insert sequence) Q5VP75 Q5VP75_ORYSJ Os01g0642900 OsJ_02792 OSNPB_010642900 P0510C12.21 ENOG411E32W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADPH-dependent FMN reductase Os03g0748500 protein A0A0P0W2Z2 A0A0P0W2Z2_ORYSJ Os03g0748500 OSNPB_030748500 ENOG411E32R Q9FNB1 Q9FNB1_ARATH Gb|AAD43168.1 34025 Gb|AAD43168.1 locus:2173224; AT5G13620 NA NA NA NA NA NA NA NA ENOG411E32P Q84MC5,Q9LDP3 Q84MC5_ARATH,Q9LDP3_ARATH At5g36710 (Transmembrane protein) (Uncharacterized protein At5g36800),Gb|AAF32471.1 (Transmembrane protein) 20362,24486 At5g36710 (Transmembrane protein) (Uncharacterized protein At5g36800),Gb|AAF32471.1 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2147376;locus:2832155; AT5G36710AT5G36800; NA Os01g0896400 protein (cDNA clone:002-121-E07, full insert sequence) (p0696G06.26 protein) Q8L419 Q8L419_ORYSJ P0696G06.26 Os01g0896400 OsJ_04398 OSNPB_010896400 ENOG411E32Q Q9FT92,A0A1P8BDA8 Y5843_ARATH,A0A1P8BDA8_ARATH Uncharacterized protein At5g08430,SWIB/MDM2 and Plus-3 and GYF domain-containing protein 63068,50418 Uncharacterized protein At5g08430,SWIB/MDM2 and Plus-3 and GYF domain-containing protein DNA binding [GO:0003677] locus:2150828; AT5G08430 Plus-3 domain NA NA NA NA NA NA NA ENOG411E32X MZB10.1 Q9S724,A0A1I9LP74 Q9S724_ARATH,A0A1I9LP74_ARATH At3g08980 (Peptidase S24/S26A/S26B/S26C family protein) (Putative mitochondrial inner membrane protease subunit 2) (Putative signal peptidase),Peptidase S24/S26A/S26B/S26C family protein 17326,15468 At3g08980 (Peptidase S24/S26A/S26B/S26C family protein) (Putative mitochondrial inner membrane protease subunit 2) (Putative signal peptidase),Peptidase S24/S26A/S26B/S26C family protein mitochondrial inner membrane peptidase complex [GO:0042720]; serine-type peptidase activity [GO:0008236]; mitochondrial respiratory chain complex assembly [GO:0033108]; protein processing involved in protein targeting to mitochondrion [GO:0006627]; signal peptide processing [GO:0006465],membrane [GO:0016020]; serine-type peptidase activity [GO:0008236] locus:2095249; AT3G08980 Mitochondrial inner membrane protease subunit OSJNBa0019G23.8 protein (Os04g0165600 protein) (cDNA clone:001-103-F08, full insert sequence),Os03g0147900 protein (Fragment) Q7XS59,A0A0P0VT29 Q7XS59_ORYSJ,A0A0P0VT29_ORYSJ Os04g0165600 OsJ_13779 OSJNBa0019G23.8 OSNPB_040165600,Os03g0147900 OSNPB_030147900 ENOG411E32Y F4HTL4,B3H569,B3H7F0 F4HTL4_ARATH,B3H569_ARATH,B3H7F0_ARATH CAP-gly domain linker 13552,17487,19339 CAP-gly domain linker locus:2197699;,locus:4515102698; AT1G61450,AT1G61415 NA Os05g0275600 protein Q6ATD2 Q6ATD2_ORYSJ Os05g0275600 Os05g0275600 OSJNBa0018H09.14 OSNPB_050275600 ENOG411DUVU TAF14B Q9FH40 TA14B_ARATH Transcription initiation factor TFIID subunit 14b (GAS 41-like protein) (Protein AF-9 homolog a) (TBP-associated factor 14b) (AtTAF14b) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with TAF14. Modest early flowering. Taf14 and taf14b double mutants show a pleiotropic phenotype that includes small size and abnormal leaf morphology (PubMed:21282526, PubMed:23017898). Taf14 and taf14b double mutants show a reduced H4K5 acetylation in the promoter region of major flowering regulator genes including FLC, CO and SOC1, and a more prononced early flowering (Ref.9). {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23017898, ECO:0000269|Ref.9}. FUNCTION: Negative regulator of flowering controlling the H4K5 acetylation levels in the FLC and FT chromatin. Positively regulates FLC expression. Component of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of a NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. {ECO:0000269|PubMed:23017898, ECO:0000269|Ref.9}. 30232 Transcription initiation factor TFIID subunit 14b (GAS 41-like protein) (Protein AF-9 homolog a) (TBP-associated factor 14b) (AtTAF14b) cytoplasm [GO:0005737]; NuA4 histone acetyltransferase complex [GO:0035267]; nucleus [GO:0005634]; cell differentiation [GO:0030154]; DNA repair [GO:0006281]; flower development [GO:0009908]; histone H4-K5 acetylation [GO:0043981]; regulation of flower development [GO:0009909]; regulation of histone H4 acetylation [GO:0090239]; regulation of photoperiodism, flowering [GO:2000028]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves, inflorescence and flowering tissues. {ECO:0000269|PubMed:15527982, ECO:0000269|PubMed:23017898}. locus:2157156; AT5G45600 protein AF-9 homolog Os06g0137300 protein (Putative TAF14b) Q5VPH6 Q5VPH6_ORYSJ Os06g0137300 Os06g0137300 OSJNBa0041F13.3 OSNPB_060137300 P0548D03.33 ENOG411DUVT Q56XQ0,A0A1P8B2P1 U496I_ARATH,A0A1P8B2P1_ARATH UPF0496 protein At2g18630,Transmembrane protein, putative (DUF677) 45006,44513 UPF0496 protein At2g18630,Transmembrane protein, putative (DUF677) integral component of membrane [GO:0016021]; peroxisome [GO:0005777],integral component of membrane [GO:0016021] locus:2053962; AT2G18630 UPF0496 protein NA NA NA NA NA NA NA ENOG411DUVR Q8LF20,Q8S9J8 CAP2_ARATH,CAP1_ARATH Putative clathrin assembly protein At2g25430,Probable clathrin assembly protein At4g32285 72084,70555 Putative clathrin assembly protein At2g25430,Probable clathrin assembly protein At4g32285 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897],clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897] locus:2040115;,locus:505006543; AT2G25430,AT4G32285 Clathrin assembly protein Clathrin assembly protein, putative, expressed (Os03g0275500 protein) (cDNA clone:J013002H14, full insert sequence),Os03g0275500 protein (Fragment) Q10NB4,A0A0P0VW19 Q10NB4_ORYSJ,A0A0P0VW19_ORYSJ Os03g0275500 LOC_Os03g16800 Os03g0275500 OSNPB_030275500,Os03g0275500 OSNPB_030275500 ENOG411DUVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) E3 ubiquitin-protein ligase Os06g0535400 (EC 2.3.2.27) (RING-H2 finger protein Os06g0535400) (RING-type E3 ubiquitin transferase Os06g0535400) Q5Z5F2 ATL61_ORYSJ Os06g0535400 LOC_Os06g34450 OSJNBa0001B21.23 FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. {ECO:0000269|PubMed:16186120}. ENOG411DUVA CRTISO Q9M9Y8,A0A1P8ATC2,A0A1P8ATE5,A0A1P8ATA5 CRTSO_ARATH,A0A1P8ATC2_ARATH,A0A1P8ATE5_ARATH,A0A1P8ATA5_ARATH Prolycopene isomerase, chloroplastic (CrtISO) (EC 5.2.1.13) (Carotenoid and chloroplast regulation protein 2) (Carotenoid isomerase),Carotenoid isomerase FUNCTION: Carotene cis-trans-isomerase that converts 7,9,9'-tri-cis-neurosporene to 9'-cis-neurosporene and 7,9,9',7'-tetra-cis-lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9'. Carotenoid biosynthesis is partly required to form the prolamellar bodies of etioplasts. {ECO:0000269|PubMed:11884677}. PATHWAY: Carotenoid biosynthesis; lycopene biosynthesis. {ECO:0000269|PubMed:11884677}. ARA:AT1G06820-MONOMER;MetaCyc:AT1G06820-MONOMER; 5.2.1.13 65428,64611,52771,57722 Prolycopene isomerase, chloroplastic (CrtISO) (EC 5.2.1.13) (Carotenoid and chloroplast regulation protein 2) (Carotenoid isomerase),Carotenoid isomerase chloroplast membrane [GO:0031969]; carotenoid isomerase activity [GO:0046608]; oxidoreductase activity [GO:0016491]; carotenoid biosynthetic process [GO:0016117]; etioplast organization [GO:0009662],carotenoid isomerase activity [GO:0046608]; oxidoreductase activity [GO:0016491]; carotenoid biosynthetic process [GO:0016117] locus:2033055; AT1G06820 isomerase Os11g0572700 protein (Putative carotenoid isomerase ZEBRA2) (Fragment) B0L964 B0L964_ORYSJ Os11g0572700 OSNPB_110572700 ENOG411DUVM NPF5.7,NPF5.6 Q9M331,P0CI03,A0A1P8AZR9 PTR45_ARATH,PTR28_ARATH,A0A1P8AZR9_ARATH Protein NRT1/ PTR FAMILY 5.7 (AtNPF5.7),Protein NRT1/ PTR FAMILY 5.6 (AtNPF5.6),Major facilitator superfamily protein R-ATH-427975;R-ATH-6798695; 67063,64306,55281 Protein NRT1/ PTR FAMILY 5.7 (AtNPF5.7),Protein NRT1/ PTR FAMILY 5.6 (AtNPF5.6),Major facilitator superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in shoots, stems, leaves and flowers. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in stems, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:17481610}. locus:2084500;,locus:2065568; AT3G53960,AT2G37900 transporter Os01g0386600 protein,Os03g0204700 protein,Os03g0823500 protein (POT family protein, expressed) (Putative peptide transport protein) (cDNA clone:001-020-D02, full insert sequence) (cDNA clone:J023109G05, full insert sequence) C7IX99,B9F620,Q852B2 C7IX99_ORYSJ,B9F620_ORYSJ,Q852B2_ORYSJ Os01g0386600 Os01g0386600 OSNPB_010386600,Os03g0204700 OsJ_09830 OSNPB_030204700,OSJNBb0081B07.12 LOC_Os03g60850 Os03g0823500 OsJ_13171 OSNPB_030823500 ENOG411DUVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain Glutathione S-transferase, N-terminal domain containing protein, expressed (Os10g0395400 protein) (Putative Bronze-2 protein) Q8L576 Q8L576_ORYSJ Os10g0395400 LOC_Os10g25590 Os10g0395400 OSJNAa0011L09.5 OSJNBa0011L09.7 OSNPB_100395400 ENOG411DUVH Q8GX17,F4JSG6 Q8GX17_ARATH,F4JSG6_ARATH Ankyrin repeat family protein (Putative ankyrin),Ankyrin repeat family protein 25524,24046 Ankyrin repeat family protein (Putative ankyrin),Ankyrin repeat family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842] locus:2134786; AT4G19150 Ankyrin repeat Ankyrin (Ankyrin-2, putative, expressed) (Os10g0580700 protein) (Putative ankyrin protein) Q7X6P5 Q7X6P5_ORYSJ Os10g0580700 LOC_Os10g43040 Os10g0580700 OsJ_32612 OSJNBa0056G17.5 OSNPB_100580700 ENOG411E51S HIPP32 Q9M8K5,F4J9P5 HIP32_ARATH,F4J9P5_ARATH Heavy metal-associated isoprenylated plant protein 32 (AtHIP32),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 49192,35896 Heavy metal-associated isoprenylated plant protein 32 (AtHIP32),Heavy metal transport/detoxification superfamily protein cell wall [GO:0005618]; cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2082425; AT3G06130 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411DUV7 CCOAOMT1,CCoAOMT1 O49499,A0A1P8B3H0,Q3E6Z1 CAMT4_ARATH,A0A1P8B3H0_ARATH,Q3E6Z1_ARATH Caffeoyl-CoA O-methyltransferase 1 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT1),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype, but slightly smaller when grown in short days conditions. 70% and 85% reduction in scopoletin and scopolin levels respectively in the roots. Reduction in global lignin content and in hydroxycinnamic acid amides content in pollen. {ECO:0000269|PubMed:17594112, ECO:0000269|PubMed:18547395, ECO:0000269|PubMed:22258746}. FUNCTION: Methylates caffeoyl-CoA to feruloyl-CoA. Has a very low activity with caffeic acid and esculetin. Involved in scopoletin biosynthesis in roots. {ECO:0000269|PubMed:17594112, ECO:0000269|PubMed:18547395, ECO:0000269|PubMed:22258746}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. ARA:AT4G34050-MONOMER;MetaCyc:AT4G34050-MONOMER; 2.1.1.104; 2.1.1.104 29155,32473,16714 Caffeoyl-CoA O-methyltransferase 1 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT1),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein caffeoyl-CoA O-methyltransferase activity [GO:0042409]; metal ion binding [GO:0046872]; coumarin biosynthetic process [GO:0009805]; lignin biosynthetic process [GO:0009809]; response to cadmium ion [GO:0046686],O-methyltransferase activity [GO:0008171] DEVELOPMENTAL STAGE: Expressed in young flower buds and decreases just before the petals appearance. {ECO:0000269|PubMed:22258746}. TISSUE SPECIFICITY: Expressed in stems and roots. Detected in leaves, siliques, flower buds, flowers. Expressed in the tapetum, but not in the endothecium. Detected in the vascular system of leaves and all flower organs, including stigma, stamens, petals and sepals. {ECO:0000269|PubMed:17594112, ECO:0000269|PubMed:22258746}. locus:2124286; AT4G34050 Methylates caffeoyl-CoA to feruloyl-CoA and 5- hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall- bound ferulic acid polymers Caffeoyl-CoA O-methyltransferase (Os06g0165800 protein) (Putative caffeoyl-CoA O-methyltransferase) Q9XJ19 Q9XJ19_ORYSJ Os06g0165800 COA1 Os06g0165800 OsJ_20249 OSJNBa0015I14.29 OSNPB_060165800 P0680A03.3 ENOG411DUV6 CYC11,CYC12 Q9LK29,Q9FKS5 CYC1A_ARATH,CYC1B_ARATH Cytochrome c1 1, heme protein, mitochondrial (Complex III subunit 4-1) (Complex III subunit IV-1) (Cytochrome b-c1 complex subunit 4-1) (Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit 1) (Cytochrome c-1 1),Cytochrome c1 2, heme protein, mitochondrial (Complex III subunit 4-2) (Complex III subunit IV-2) (Cytochrome b-c1 complex subunit 4-2) (Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit 2) (Cytochrome c-1 2) FUNCTION: This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain. {ECO:0000250}. ARA:AT3G27240-MONOMER; 33650,33690 Cytochrome c1 1, heme protein, mitochondrial (Complex III subunit 4-1) (Complex III subunit IV-1) (Cytochrome b-c1 complex subunit 4-1) (Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit 1) (Cytochrome c-1 1),Cytochrome c1 2, heme protein, mitochondrial (Complex III subunit 4-2) (Complex III subunit IV-2) (Cytochrome b-c1 complex subunit 4-2) (Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit 2) (Cytochrome c-1 2) membrane [GO:0016020]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity [GO:0045155]; electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity [GO:0045153]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122],membrane [GO:0016020]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]; vacuole [GO:0005773]; electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity [GO:0045155]; electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity [GO:0045153]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122] locus:2086553;,locus:2164471; AT3G27240,AT5G40810 cytochrome c1-1 heme protein Os01g0935700 protein (Putative ubiquinol-cytochrome-c reductase cytochrome c1) (cDNA clone:J023013M20, full insert sequence),Os05g0301700 protein (cDNA clone:J023061F14, full insert sequence),Os01g0935700 protein (cDNA clone:J033010L17, full insert sequence) Q942X6,Q0DJC3,B7ELQ3 Q942X6_ORYSJ,Q0DJC3_ORYSJ,B7ELQ3_ORYSJ P0492G09.27-1 Os01g0935700 OsJ_04682 OSNPB_010935700,Os05g0301700 Os05g0301700 OSNPB_050301700,Os01g0935700 OSNPB_010935700 ENOG411DUV5 PS2 Q67YC0,Q9SU92,Q9FZ62,A0A1P8B4E1 PPSP1_ARATH,PPSP3_ARATH,PPSP2_ARATH,A0A1P8B4E1_ARATH Inorganic pyrophosphatase 1 (AtPPsPase1) (PPi phosphatase 1) (Pyrophosphate-specific phosphatase 1) (EC 3.6.1.1) (Protein PHOSPHATE STARVATION-INDUCED GENE 2) (AtPS2),Thiamine phosphate phosphatase-like protein (EC 3.1.3.100),Inorganic pyrophosphatase 2 (AtPPsPase2) (PPi phosphatase 2) (Pyrophosphate-specific phosphatase 2) (EC 3.6.1.1),Pyridoxal phosphate phosphatase-related protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:26537753}. FUNCTION: Catalyzes the specific cleavage of pyrophosphate. {ECO:0000269|PubMed:21122813}.,FUNCTION: HAD-like hydrolase that has a thiamine monophosphate phosphatase activity in an heterologous system (PubMed:26537753). Does not contribute to thiamine monophosphate phosphatase activity in planta (PubMed:27677881). {ECO:0000269|PubMed:26537753, ECO:0000269|PubMed:27677881}.,FUNCTION: Catalyzes the specific cleavage of pyrophosphate. {ECO:0000250}. ARA:AT1G73010-MONOMER;,ARA:AT4G29530-MONOMER;MetaCyc:AT4G29530-MONOMER;,ARA:AT1G17710-MONOMER; R-ATH-1483191;R-ATH-1483213; 3.6.1.1;,3.1.3.75; 3.6.1.1,3.1.3.100 33515,28053,31570,26589 Inorganic pyrophosphatase 1 (AtPPsPase1) (PPi phosphatase 1) (Pyrophosphate-specific phosphatase 1) (EC 3.6.1.1) (Protein PHOSPHATE STARVATION-INDUCED GENE 2) (AtPS2),Thiamine phosphate phosphatase-like protein (EC 3.1.3.100),Inorganic pyrophosphatase 2 (AtPPsPase2) (PPi phosphatase 2) (Pyrophosphate-specific phosphatase 2) (EC 3.6.1.1),Pyridoxal phosphate phosphatase-related protein inorganic diphosphatase activity [GO:0004427]; metal ion binding [GO:0046872]; phosphatase activity [GO:0016791]; pyrophosphatase activity [GO:0016462]; cellular response to phosphate starvation [GO:0016036]; protein tetramerization [GO:0051262],inorganic diphosphatase activity [GO:0004427]; metal ion binding [GO:0046872]; phosphatase activity [GO:0016791]; thiamine phosphate phosphatase activity [GO:0042131]; protein tetramerization [GO:0051262]; thiamine diphosphate biosynthetic process [GO:0009229],inorganic diphosphatase activity [GO:0004427]; metal ion binding [GO:0046872]; phosphocholine phosphatase activity [GO:0052731]; phosphoethanolamine phosphatase activity [GO:0052732]; protein tetramerization [GO:0051262],phosphatase activity [GO:0016791] locus:2032748;,locus:2134353;,locus:2007958; AT1G73010,AT4G29530,AT1G17710 phosphatase Os01g0720400 protein (Phosphatase-like),Os01g0600500 protein Q8W0E7,A0A0P0V4W4 Q8W0E7_ORYSJ,A0A0P0V4W4_ORYSJ Os01g0720400 Os01g0720400 OSNPB_010720400 P0690B02.6,Os01g0600500 OSNPB_010600500 ENOG411E51W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Viral movement protein (MP) NA NA NA NA NA NA NA ENOG411DUV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Probable glutathione S-transferase GSTU1 (EC 2.5.1.18),Os07g0468100 protein (Putative glutathione-S-transferase) (cDNA clone:001-204-E06, full insert sequence) (cDNA clone:J023025D08, full insert sequence) Q10CE7,Q69RL1 GSTU1_ORYSJ,Q69RL1_ORYSJ GSTU1 GST1 Os03g0785900 LOC_Os03g57200 OsJ_012308,Os07g0468100 OsJ_24179 OSNPB_070468100 P0003B09.29 FUNCTION: Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. ENOG411DUV2 UGT72D1 Q9ZU72,F4IQK7 U72D1_ARATH,F4IQK7_ARATH UDP-glycosyltransferase 72D1 (EC 2.4.1.-),Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) ARA:AT2G18570-MONOMER; 2.4.1.- 51913,42423 UDP-glycosyltransferase 72D1 (EC 2.4.1.-),Glycosyltransferase (UDP-Glycosyltransferase superfamily protein) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2046328;,locus:2046338; AT2G18570,AT2G18560 anthocyanidin 3-O-glucosyltransferase 5-like NA NA NA NA NA NA NA ENOG411E51I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC NA NA NA NA NA NA NA ENOG411DUV0 Q8LEJ7 Q8LEJ7_ARATH At1g55265 19137 At1g55265 vacuole [GO:0005773] locus:505006187; AT1G55265 Protein of unknown function DUF538 Expressed protein (Os03g0692700 protein),Os03g0692700 protein,Expressed protein (Os03g0692700 protein) (cDNA clone:001-012-C05, full insert sequence) (cDNA clone:J023003K18, full insert sequence) Q851I6,Q851I5,Q10EV9,A0A0P0W1R1 Q851I6_ORYSJ,Q851I5_ORYSJ,Q10EV9_ORYSJ,A0A0P0W1R1_ORYSJ Os03g0692700 LOC_Os03g48626 OsJ_12187 OSJNBb0021O11.26 OSJNBb0101N11.19 OSNPB_030692700,OSJNBb0021O11.27 Os03g0692700 OSNPB_030692700,Os03g0692700 LOC_Os03g48626 OSNPB_030692700,Os03g0692700 OSNPB_030692700 ENOG411E51J RDM1 Q9LUJ3 RDM1_ARATH Protein RDM1 (Protein RNA-directed DNA methylation 1) DISRUPTION PHENOTYPE: Impaired accumulation of siRNAs, reduced DNA methylation, and loss of transcriptional gene silencing at RdDM target loci. Impaired RNA polymerase V-chromatin associations (Pol V). {ECO:0000269|PubMed:20409711, ECO:0000269|PubMed:20410883, ECO:0000269|PubMed:22864289}. Decreased DNA methylation-J. Zhu-2010 FUNCTION: Regulator of RNA-directed DNA methylation (RdDM). Binds to single-stranded methyl DNA. Involved in the assembly of RNA polymerase V (Pol V) transcription initiation or elongation complexes at the chromatin, as a component of the DDR complex. {ECO:0000269|PubMed:20409711, ECO:0000269|PubMed:20410883, ECO:0000269|PubMed:22864289}. 18692 Protein RDM1 (Protein RNA-directed DNA methylation 1) DNA-directed RNA polymerase V complex [GO:0000419]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein self-association [GO:0043621]; DNA methylation [GO:0006306]; production of small RNA involved in gene silencing by RNA [GO:0070918]; regulation of DNA methylation [GO:0044030] locus:2094399; AT3G22680 Domain of unknown function(DUF1950) Os06g0630300 protein (cDNA clone:J023105O05, full insert sequence) Q67IW5 Q67IW5_ORYSJ Os06g0630300 OSJNBa0023I22.45-2 OSJNBa0048L03.18-2 OSNPB_060630300 ENOG411E51E ENODL4,ENODL3 Q84JV2,F4JL85 Q84JV2_ARATH,F4JL85_ARATH Early nodulin-like protein 4 (Putative nodulin),Early nodulin-like protein 3 23658,21602 Early nodulin-like protein 4 (Putative nodulin),Early nodulin-like protein 3 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2127861;,locus:505006529; AT4G32490,AT4G28365 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E51G O64568,Q9SZQ6 O64568_ARATH,Q9SZQ6_ARATH Expressed protein (Transmembrane protein (DUF872)) (Uncharacterized protein At2g19350),At4g29850 (Transmembrane protein (DUF872)) (Uncharacterized protein AT4g29850) (Uncharacterized protein F27B13.90) 11386,11481 Expressed protein (Transmembrane protein (DUF872)) (Uncharacterized protein At2g19350),At4g29850 (Transmembrane protein (DUF872)) (Uncharacterized protein AT4g29850) (Uncharacterized protein F27B13.90) integral component of membrane [GO:0016021] locus:2047625;,locus:2123949; AT2G19350,AT4G29850 expressed protein Os02g0176400 protein (cDNA clone:001-106-F08, full insert sequence) Q6ETP4 Q6ETP4_ORYSJ Os02g0176400 Os02g0176400 OJ1077_E05.25 OsJ_05591 OSNPB_020176400 P0504A05.1 ENOG411EM1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EHF4 Q66GS7 Q66GS7_ARATH At1g30250 9134 At1g30250 locus:2009802; AT1G30250 NA NA NA NA NA NA NA NA ENOG411EHF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0182850 protein Q6H891 Q6H891_ORYSJ OJ1572_F02.1 Os02g0182850 OSNPB_020182850 ENOG411EHFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFI MTE17.17 Q8GWA4 Q8GWA4_ARATH At5g55460 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At5g55460/MTE17_17) 11691 At5g55460 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At5g55460/MTE17_17) locus:2173957; AT5G55460 AAI NA NA NA NA NA NA NA ENOG411EHFH CLE43 Q6IWB1 CLE43_ARATH CLAVATA3/ESR (CLE)-related protein 43 [Cleaved into: CLE43p] FUNCTION: Extracellular signal peptide that regulates cell fate. {ECO:0000250}. 11306 CLAVATA3/ESR (CLE)-related protein 43 [Cleaved into: CLE43p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed at low levels in seedlings. {ECO:0000269|PubMed:16489133}. locus:1009023110; AT1G25425 clavata3 esr-related 43 NA NA NA NA NA NA NA ENOG411EHFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os08g0541800 protein,Os01g0111000 protein Q6ZIT5,A0A0P0UXK1 Q6ZIT5_ORYSJ,A0A0P0UXK1_ORYSJ Os08g0541800 OJ1211_G06.26 OJ1521_G02.4 OsJ_28133 OSNPB_080541800,Os01g0111000 OSNPB_010111000 ENOG411EHFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0618900 protein,Os02g0619100 protein,Os02g0619200 protein,Os02g0619166 protein,Os02g0619000 protein Q6K945,Q6K943,Q6K941,A0A0P0VM29,A0A0P0VLR9 Q6K945_ORYSJ,Q6K943_ORYSJ,Q6K941_ORYSJ,A0A0P0VM29_ORYSJ,A0A0P0VLR9_ORYSJ Os02g0618900 OJ1212_C01.24 OJ1372_D06.7 OsJ_07552 OSNPB_020618900,Os02g0619100 OJ1212_C01.26 OJ1372_D06.9 OSNPB_020619100,Os02g0619200 OJ1212_C01.28 OJ1372_D06.11 OSNPB_020619200,Os02g0619166 OSNPB_020619166,Os02g0619000 OSNPB_020619000 ENOG411EHFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFZ MFB16.5 Q9LUF5 Q9LUF5_ARATH At5g50660 (Emb|CAB62355.1) (Predicted GPI-anchored protein) (Transmembrane protein, putative (DUF 3339)) 7392 At5g50660 (Emb|CAB62355.1) (Predicted GPI-anchored protein) (Transmembrane protein, putative (DUF 3339)) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2159707;locus:2832466; AT5G50560AT5G50660; Protein of unknown function (DUF3339) NA NA NA NA NA NA NA ENOG411EHFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helicase NA NA NA NA NA NA NA ENOG411EAAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-CoA synthase 10-like NA NA NA NA NA NA NA ENOG411DVJ8 Q93XW7,A0A1I9LM37 C3H40_ARATH,A0A1I9LM37_ARATH Zinc finger CCCH domain-containing protein 40 (AtC3H40),Zinc finger C-x8-C-x5-C-x3-H type family protein 50519,47769 Zinc finger CCCH domain-containing protein 40 (AtC3H40),Zinc finger C-x8-C-x5-C-x3-H type family protein DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:2093044; AT3G21810 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 13 (OsC3H13) (BRI1-kinase domain-interacting protein 105) (BIP105) Q6H7U2 C3H13_ORYSJ Os02g0161200 LOC_Os02g06584 B1103G11.54 OJ9003_G05.19 ENOG411E5BP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411E5BQ RHA4A Q84TF5 RHA4A_ARATH Probable E3 ubiquitin-protein ligase RHA4A (EC 2.3.2.27) (RING-H2 finger A4a) (RING-H2 zinc finger protein RHA4a) (RING-type E3 ubiquitin transferase RHA4A) FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9ZT50}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 2.3.2.27 19717 Probable E3 ubiquitin-protein ligase RHA4A (EC 2.3.2.27) (RING-H2 finger A4a) (RING-H2 zinc finger protein RHA4a) (RING-type E3 ubiquitin transferase RHA4A) metal ion binding [GO:0046872]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in stems, flowers, cauline leaves and roots. {ECO:0000269|PubMed:9781696}. locus:1006230395; AT4G24015 Ring-H2 zinc finger protein NA NA NA NA NA NA NA ENOG411E5BR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0329300 protein (cDNA clone:J013122H17, full insert sequence) Q69UY7 Q69UY7_ORYSJ Os06g0329300 Os06g0329300 OJ1230_H04.6 OsJ_21192 OSNPB_060329300 ENOG411E5BS Y-3 Q6DR24,A0A1I9LLG8 Y3795_ARATH,A0A1I9LLG8_ARATH Uncharacterized protein At3g17950,Transmembrane protein 22901,21575 Uncharacterized protein At3g17950,Transmembrane protein integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in inflorescences, stems, rosette leaves and weakly in roots. {ECO:0000269|PubMed:15618630}. locus:2088565; AT3G17950 NA Os06g0256800 protein (Fragment) A0A0P0WV67 A0A0P0WV67_ORYSJ Os06g0256800 OSNPB_060256800 ENOG411E5BT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0462000 protein (Fragment),Os01g0930200 protein,Os06g0279350 protein (Fragment) Q0E1C7,Q5JK33,A0A0P0WVR2 Q0E1C7_ORYSJ,Q5JK33_ORYSJ,A0A0P0WVR2_ORYSJ Os02g0462000 Os02g0462000 OSNPB_020462000,Os01g0930200 Os01g0930200 OsJ_04643 OSJNBa0052O12.29 OSNPB_010930200 P0506E04.7,Os06g0279350 OSNPB_060279350 ENOG411E5BU Q9XI97 Q9XI97_ARATH F13F21.27 protein (Rho guanine nucleotide exchange factor) 38777 F13F21.27 protein (Rho guanine nucleotide exchange factor) locus:2010277; AT1G49290 NA NA NA NA NA NA NA NA ENOG411E5BV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E5BW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5BX PMEI7 Q9SB37 PMEI7_ARATH Pectinesterase inhibitor 7 (Pectin methylesterase inhibitor 7) (AtPMEI7) FUNCTION: Pectin methylesterase (PME) inhibitor that can target the PME3 and may regulate homogalacturonan methylesterification during plant development. {ECO:0000269|PubMed:26183897}. 22173 Pectinesterase inhibitor 7 (Pectin methylesterase inhibitor 7) (AtPMEI7) apoplast [GO:0048046]; enzyme inhibitor activity [GO:0004857]; shade avoidance [GO:0009641] locus:2122624; AT4G25260 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E5BY Q5PP35,F4J517 Q5PP35_ARATH,F4J517_ARATH At3g11000 (DCD (Development and Cell Death) domain protein),DCD (Development and Cell Death) domain protein 53878,67817 At3g11000 (DCD (Development and Cell Death) domain protein),DCD (Development and Cell Death) domain protein locus:2085492; AT3G11000 DCD NA NA NA NA NA NA NA ENOG411E5BZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Pectinesterase inhibitor 12 (Pectin methylesterase inhibitor 12) (OsPMEI12),Os02g0537100 protein Q10T67,A0A0P0VJX3 PMI12_ORYSJ,A0A0P0VJX3_ORYSJ PMEI12 Os03g0100100 LOC_Os03g01020 OsJ_09046,Os02g0537100 OSNPB_020537100 FUNCTION: Pectin methylesterase (PME) inhibitor that inhibits PME in vitro. {ECO:0000269|PubMed:26874295}. ENOG411E5BA F4I7D6,F4I7D7 F4I7D6_ARATH,F4I7D7_ARATH CTTNBP 2 amino-terminal-like protein 20605,17582 CTTNBP 2 amino-terminal-like protein integral component of membrane [GO:0016021] locus:2197389; AT1G11120 NA Os07g0565500 protein (Fragment) A0A0P0X7I4 A0A0P0X7I4_ORYSJ Os07g0565500 OSNPB_070565500 ENOG411E5BB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Membrane fusion protein Use1 Cation exchanger-like protein (Os09g0272500 protein) (cDNA clone:J023117G02, full insert sequence) Q6H4Y9 Q6H4Y9_ORYSJ Os09g0272500 OSNPB_090272500 P0515A04.25 ENOG411E5BC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os07g0590100 protein (Fragment) A0A0P0X8R3 A0A0P0X8R3_ORYSJ Os07g0590100 OSNPB_070590100 ENOG411E5BD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os03g0794000 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (Putative protease inhibitor) Q852L5 Q852L5_ORYSJ OSJNBb0060J21.7 LOC_Os03g57990 Os03g0794000 OSNPB_030794000 ENOG411E5BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Rna binding protein Os02g0227100 protein (Fragment) A0A0N7KEY9 A0A0N7KEY9_ORYSJ Os02g0227100 OSNPB_020227100 ENOG411E5BF ENODL6,ENODL5 Q4PSZ8,Q9LII0 Q4PSZ8_ARATH,Q9LII0_ARATH Early nodulin-like protein 6 (Plastocyanin-like domain-containing protein),Early nodulin-like protein 5 19750,20561 Early nodulin-like protein 6 (Plastocyanin-like domain-containing protein),Early nodulin-like protein 5 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2028396;,locus:2086899; AT1G48940,AT3G18590 Early nodulin-like protein OSJNBa0018M05.5 protein (OSJNBb0004A17.20 protein) (Os04g0673800 protein) (cDNA clone:J023082A20, full insert sequence) Q7XQA3 Q7XQA3_ORYSJ OSJNBb0004A17.20 Os04g0673800 OsJ_16595 OSJNBa0018M05.5 OSNPB_040673800 ENOG411E5BG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0296200 protein (Fragment) A0A0P0VWE6 A0A0P0VWE6_ORYSJ Os03g0296200 OSNPB_030296200 ENOG411E5BH MSF19.3 Q9FIE4 Q9FIE4_ARATH U4/U6.U5 small nuclear ribonucleoprotein (Uncharacterized protein At5g57370) R-ATH-72163; 26042 U4/U6.U5 small nuclear ribonucleoprotein (Uncharacterized protein At5g57370) cytosol [GO:0005829]; precatalytic spliceosome [GO:0071011]; viral nucleocapsid [GO:0019013]; RNA splicing [GO:0008380] locus:2172999; AT5G57370 Protein of unknown function (DUF1777) Os02g0461600 protein (cDNA clone:001-113-D01, full insert sequence) (cDNA clone:002-148-C12, full insert sequence),Os06g0515200 protein,Os02g0461600 protein (Fragment) Q0E1C9,A0A0P0WX64,A0A0P0VIS4 Q0E1C9_ORYSJ,A0A0P0WX64_ORYSJ,A0A0P0VIS4_ORYSJ Os02g0461600 Os02g0461600 OsJ_06638 OSNPB_020461600,Os06g0515200 OSNPB_060515200,Os02g0461600 OSNPB_020461600 ENOG411E5BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) Os02g0534000 protein C7IYN4 C7IYN4_ORYSJ Os02g0534000 Os02g0534000 OSNPB_020534000 ENOG411E5BJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA epidermal patterning factor-like protein Os07g0132300 protein (cDNA, clone: J065132F16, full insert sequence) Q7F166 Q7F166_ORYSJ OJ1606_D04.120 Os07g0132300 OsJ_22987 OSNPB_070132300 ENOG411E5BK Q9SUC4 Q9SUC4_ARATH Ethylene-regulated transcript 2 (ERT2) (Ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)) (Putative ethylene-regulated transcript 2 ERT2) 45668 Ethylene-regulated transcript 2 (ERT2) (Ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)) (Putative ethylene-regulated transcript 2 ERT2) integral component of membrane [GO:0016021]; nucleus [GO:0005634] locus:2133069; AT4G20880 Inherit from euNOG: Ethylene-responsive nuclear protein NA NA NA NA NA NA NA ENOG411E5BM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Glutaredoxin-C15 Q2QP86 GRC15_ORYSJ GRXC15 Os12g0538700 LOC_Os12g35340 OsJ_36376 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E5BN OFP17 Q84RF2 OPF17_ARATH Transcription repressor OFP17 (Ovate family protein 17) (AtOFP17) FUNCTION: Transcriptional repressor that may regulate multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP17 have no visible phenotype. {ECO:0000305|PubMed:21886836}. 22697 Transcription repressor OFP17 (Ovate family protein 17) (AtOFP17) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] locus:504955904; AT2G30395 NA Os05g0328300 protein A0A0P0WKS6 A0A0P0WKS6_ORYSJ Os05g0328300 OSNPB_050328300 ENOG411E5B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0679100 protein Q7XIV7 Q7XIV7_ORYSJ Os07g0679100 OJ1205_F02.3 OJ1409_C08.22 OSNPB_070679100 ENOG411E5B1 A0A1P8BFV7,F4KG83 A0A1P8BFV7_ARATH,F4KG83_ARATH RNA-binding protein-like RNA recognition motif protein 17659,8950 RNA-binding protein-like RNA recognition motif protein RNA binding [GO:0003723] locus:504955051; AT5G52545 RNA-binding protein 18-like NA NA NA NA NA NA NA ENOG411E5B2 Q0WVV5 Q0WVV5_ARATH Oxidoreductases, acting on NADH or NADPH (Uncharacterized protein At1g75260) 56445 Oxidoreductases, acting on NADH or NADPH (Uncharacterized protein At1g75260) locus:2025172; AT1G75260 NA NA NA NA NA NA NA NA ENOG411E5B3 Q6NL19,A0A1P8ANJ5,F4I2E7,F4I2E6 Q6NL19_ARATH,A0A1P8ANJ5_ARATH,F4I2E7_ARATH,F4I2E6_ARATH At1g20890 (Caveolin-1 protein),Caveolin-1 protein 22554,19888,26379,24598 At1g20890 (Caveolin-1 protein),Caveolin-1 protein integral component of membrane [GO:0016021] locus:2037360;,locus:2011756; AT1G20890,AT1G76480 NA Expressed protein (Os03g0804100 protein),Os08g0374900 protein Q75HK3,A0A0P0XFK4 Q75HK3_ORYSJ,A0A0P0XFK4_ORYSJ Os03g0804100 LOC_Os03g58930 Os03g0804100 OsJ_13007 OSJNBb0015I02.2 OSNPB_030804100,Os08g0374900 OSNPB_080374900 ENOG411E5B4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA NA NA NA NA NA NA NA ENOG411E5B5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein NA NA NA NA NA NA NA ENOG411E5B6 GRXC5,GrxC5 Q8GWS0,A0A1P8B4W9 GRXC5_ARATH,A0A1P8B4W9_ARATH Glutaredoxin-C5, chloroplastic (AtGrxC5),Glutaredoxin family protein FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. Can assemble a [2Fe-2S] cluster, but cannot transfer it to an apoferredoxin. {ECO:0000269|PubMed:21632542}. 18814,15504 Glutaredoxin-C5, chloroplastic (AtGrxC5),Glutaredoxin family protein chloroplast [GO:0009507]; electron carrier activity [GO:0009055]; glutathione-disulfide reductase activity [GO:0004362]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; iron-sulfur cluster assembly [GO:0016226],cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2117793; AT4G28730 Glutaredoxin Monothiol glutaredoxin-S10,Os08g0565800 protein (Fragment) Q0J3L4,A0A0P0XJN9 GRS10_ORYSJ,A0A0P0XJN9_ORYSJ GRXS10 Os08g0565800 LOC_Os08g45140 OsJ_28319 OSJNBa0044E16.18-1 OSJNBa0044E16.18-2 P0705A05.134-1 P0705A05.134-2,Os08g0565800 OSNPB_080565800 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411E5B7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os02g0720100 protein (Putative small blue copper protein Bcp1) (cDNA clone:001-120-D09, full insert sequence) Q6ZI14 Q6ZI14_ORYSJ Os02g0720100 Os02g0720100 OJ1008_D06.14 OSNPB_020720100 ENOG411E5B8 SAUR38,SAUR37 Q9ZQ28,O49581 Q9ZQ28_ARATH,O49581_ARATH At2g24400 (Putative auxin-regulated protein) (SAUR-like auxin-responsive protein family),Auxin induced like-protein (SAUR-like auxin-responsive protein family) 20054,21417 At2g24400 (Putative auxin-regulated protein) (SAUR-like auxin-responsive protein family),Auxin induced like-protein (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2061037;,locus:2128136; AT2G24400,AT4G31320 auxin-responsive protein OSJNBa0060N03.10 protein (Os04g0608300 protein) (cDNA clone:002-181-G09, full insert sequence) Q7XPF1 Q7XPF1_ORYSJ Os04g0608300 OsJ_16092 OSJNBa0060N03.10 OSNPB_040608300 ENOG411E5B9 Q8VY53 Q8VY53_ARATH Phosphatidylinositolglycan-like protein (Uncharacterized protein At4g35530) 21941 Phosphatidylinositolglycan-like protein (Uncharacterized protein At4g35530) integral component of membrane [GO:0016021]; phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176] locus:2127938; AT4G35530 GPI-GlcNAc transferase complex PIG-H component Os05g0165400 protein (cDNA clone:001-127-F03, full insert sequence) Q0DKG4 Q0DKG4_ORYSJ Os05g0165400 Os05g0165400 OSNPB_050165400 ENOG411DVJX RPL11A,RPL11B; RPL11C; RPL11D P42795,P42794 RL111_ARATH,RL112_ARATH 60S ribosomal protein L11-1 (L16A),60S ribosomal protein L11-2 (L16) FUNCTION: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel. {ECO:0000250|UniProtKB:P0C0W9}. MISCELLANEOUS: There are four genes for RPL11 in A.thaliana. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 20831,20861 60S ribosomal protein L11-1 (L16A),60S ribosomal protein L11-2 (L16) chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleus [GO:0005634]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:2052432;,locus:2099024;locus:2124112;locus:505006673; AT2G42740,AT3G58700AT4G18730;AT5G45775; ribosomal protein 60S ribosomal protein L11,Os01g0205500 protein (Putative 60S ribosomal protein L11-1) (cDNA clone:J013120K02, full insert sequence),Os02g0235600 protein (cDNA clone:J013093C14, full insert sequence),Os06g0550000 protein (Fragment) Q0DK10,Q9LWN1,Q0E2I8,A0A0P0WXQ4 RL11_ORYSJ,Q9LWN1_ORYSJ,Q0E2I8_ORYSJ,A0A0P0WXQ4_ORYSJ RPL11 Os05g0207300 LOC_Os05g11710 OJ1430_B02.2 OsJ_17505 OsJ_21642,Os01g0205500 OsJ_00808 OSNPB_010205500 P0451C06.24,Os02g0235600 Os02g0235600 OSNPB_020235600,Os06g0550000 OSNPB_060550000 FUNCTION: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel. {ECO:0000250|UniProtKB:P0C0W9}. ENOG411DVJZ OBAP1B,OBAP1A Q8GWR2,Q9ZVY7 OBP1B_ARATH,OBP1A_ARATH Oil body-associated protein 1B,Oil body-associated protein 1A DISRUPTION PHENOTYPE: Irregularly expanded oil-containing structures, 40% reduction of triacylglycerols (TAG) content in seeds and 98% decreased seed germination rate. {ECO:0000269|PubMed:24406791}. 26759,27293 Oil body-associated protein 1B,Oil body-associated protein 1A lipid droplet [GO:0005811]; embryo development ending in seed dormancy [GO:0009793]; lipid storage [GO:0019915]; response to abscisic acid [GO:0009737]; seed oilbody biogenesis [GO:0010344] DEVELOPMENTAL STAGE: Highly expressed during seed maturation. Decreases rapidly after imbibition, becoming undetectable only 5 days after imbibition. {ECO:0000269|PubMed:24406791}. TISSUE SPECIFICITY: Expressed in seeds. Not detected in stems or mature leaves. {ECO:0000269|PubMed:24406791}. locus:504956051;,locus:2201041; AT2G31985,AT1G05510 Protein of unknown function (DUF1264) Os05g0569500 protein (Putative embryo-specific protein Ose731) (cDNA clone:J033045K24, full insert sequence) Q6AUN1 Q6AUN1_ORYSJ Os05g0569500 OSJNBa0040E06.9 OSNPB_050569500 ENOG411DVJP HCC1 Q8VYP0 SCO11_ARATH Protein SCO1 homolog 1, mitochondrial (Homolog of the copper chaperone SCO1 member 1) (HCC1) DISRUPTION PHENOTYPE: Embryos arrested at various developmental stages, mostly at the heart or torpedo stage. {ECO:0000269|PubMed:21041373, ECO:0000269|PubMed:21543521}. Embryo defective; Transition-G. Rodel-2011 FUNCTION: Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX. Plays an essential role in embryo development. {ECO:0000269|PubMed:21041373, ECO:0000269|PubMed:21543521}. 37195 Protein SCO1 homolog 1, mitochondrial (Homolog of the copper chaperone SCO1 member 1) (HCC1) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; cell redox homeostasis [GO:0045454]; cellular copper ion homeostasis [GO:0006878]; copper ion transport [GO:0006825]; embryo development ending in seed dormancy [GO:0009793]; mitochondrial respiratory chain complex IV assembly [GO:0033617] TISSUE SPECIFICITY: Expressed in the whole plant with highest expression in imbibed seeds, embryos, endosperm, and root tips. {ECO:0000269|PubMed:21543521}. locus:2097673; AT3G08950 protein SCO1 homolog Os02g0159700 protein A0A0P0VF55 A0A0P0VF55_ORYSJ Os02g0159700 OSNPB_020159700 ENOG411DVJS MHF15.22 Q9FNI2,A0A1P8BAM8,A0A1P8BAM0,F4JJY3 Q9FNI2_ARATH,A0A1P8BAM8_ARATH,A0A1P8BAM0_ARATH,F4JJY3_ARATH Similarity to unknown protein (TLD-domain containing nucleolar protein) (Uncharacterized protein At5g06260),TLD-domain containing nucleolar protein,Calcium-binding EF-hand family protein 47424,40342,37288,34875 Similarity to unknown protein (TLD-domain containing nucleolar protein) (Uncharacterized protein At5g06260),TLD-domain containing nucleolar protein,Calcium-binding EF-hand family protein calcium ion binding [GO:0005509] locus:2164225;,locus:2124316; AT5G06260,AT4G34070 TLD Os12g0157200 protein (TLD family protein, expressed) Q2QXG8 Q2QXG8_ORYSJ Os12g0157200 LOC_Os12g06100 Os12g0157200 OSNPB_120157200 ENOG411E5N2 atpF P56759 ATPF_ARATH ATP synthase subunit b, chloroplastic (ATP synthase F(0) sector subunit b) (ATPase subunit I) FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. {ECO:0000255|HAMAP-Rule:MF_01398}.; FUNCTION: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). {ECO:0000255|HAMAP-Rule:MF_01398}. MISCELLANEOUS: In plastids the F-type ATPase is also known as CF(1)CF(0). 21057 ATP synthase subunit b, chloroplastic (ATP synthase F(0) sector subunit b) (ATPase subunit I) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; proton-transporting ATP synthase complex, coupling factor F(o) [GO:0045263]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP synthesis coupled proton transport [GO:0015986]; response to cytokinin [GO:0009735] locus:504954637; ATCG00130 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel linked together by a central stalk and a peripheral stalk. During catalysis ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity) ATP synthase subunit b, chloroplastic (ATP synthase F(0) sector subunit b) (ATPase subunit I) P0C2Z0 ATPF_ORYSJ atpF Nip045 FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. {ECO:0000255|HAMAP-Rule:MF_01398}.; FUNCTION: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). {ECO:0000255|HAMAP-Rule:MF_01398}. MISCELLANEOUS: In plastids the F-type ATPase is also known as CF(1)CF(0). ENOG411E5NE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E5NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RuBisCO catalyzes two reactions the carboxylation of D- ribulose 15-bisphosphate the primary event in carbon dioxide fixation as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity) NA NA NA NA NA NA NA ENOG411EHKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HELICc NA NA NA NA NA NA NA ENOG411EHKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5NN Q700D9 MYBF_ARATH Putative Myb family transcription factor At1g14600 FUNCTION: Putative transcription factor. 29094 Putative Myb family transcription factor At1g14600 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2204518; AT1G14600 dna binding NA NA NA NA NA NA NA ENOG411EHKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phloem filament protein PP1 NA NA NA NA NA NA NA ENOG411E5NI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os03g0124500 protein) Q10SF2 Q10SF2_ORYSJ Os03g0124500 LOC_Os03g03320 Os03g0124500 OsJ_09234 OSNPB_030124500 ENOG411E5NJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger homeodomain protein NA NA NA NA NA NA NA ENOG411EHKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E5NV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411E5NW MNF13.2 Q8VZ30,A8MQK4 Q8VZ30_ARATH,A8MQK4_ARATH Uncharacterized protein At5g40500,Uncharacterized protein 14017,13066 Uncharacterized protein At5g40500,Uncharacterized protein locus:2168723; AT5G40500 NA OSJNBa0081L15.1 protein (OSJNBb0011N17.21 protein) (Os04g0482900 protein) (cDNA clone:J023013P08, full insert sequence) Q7XUP2 Q7XUP2_ORYSJ Os04g0482900 OsJ_15226 OSJNBa0081L15.1 OSJNBb0011N17.21 OSNPB_040482900 ENOG411EHKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBK4 CYP84A1,CYP84A4 Q42600,F4JW83 C84A1_ARATH,C84A4_ARATH Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H),Cytochrome P450 84A4 (EC 1.14.-.-) DISRUPTION PHENOTYPE: Deficient in arabidopyrones, but normal amounts of sinapate esters. {ECO:0000269|PubMed:22923580}. altered phenylpropanoid metabolism; reduced sinapoyl malate syringyl lignin and sinpoyl choline probably due to lack of conversion of ferulate to 5-hydroxyferulate; may be sensitive to UV-B radiation.,Double mutants lacked hyper-fluorescent trichomes. Low sinapoylmalate levels in leaves-K. Meyer-1999 FUNCTION: Cytochrome P450 involved in the production of catechol-substituted substrates needed for the arabidopyrones biosynthesis. Converts p-coumaraldehyde into caffealdehyde. {ECO:0000269|PubMed:22923580}. MISCELLANEOUS: Arabidopyrones are derived from phenylalanine instead of tyrosine like other ring-cleavage-derived plant metabolites. {ECO:0000305|PubMed:22923580}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. MetaCyc:AT4G36220-MONOMER;,MetaCyc:MONOMER-19383; 1.14.-.- 58721,57955 Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H),Cytochrome P450 84A4 (EC 1.14.-.-) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; lignin biosynthetic process [GO:0009809]; phenylpropanoid biosynthetic process [GO:0009699]; response to UV-B [GO:0010224],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; lignin biosynthetic process [GO:0009809]; oxidation-reduction process [GO:0055114] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems and inflorescence nodes. Low or no expression in leaves, flowers, seeds and lignifying tissue. {ECO:0000269|PubMed:22923580}. locus:2122194;,locus:2179959; AT4G36220,AT5G04330 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EBK5 TET13 Q9SI56 TET13_ARATH Tetraspanin-13 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 32607 Tetraspanin-13 integral component of membrane [GO:0016021]; lateral root development [GO:0048527]; primary root development [GO:0080022] locus:2056810; AT2G03840 Tetraspanin family NA NA NA NA NA NA NA ENOG411EBK6 FBX9 Q9LUI9,Q1PEN2,Q9LUJ1,Q9LUP9,Q9LUI8,Q9SI34,Q9LUJ0,Q9LUG3,F4J085 FB325_ARATH,FB174_ARATH,FB324_ARATH,FB152_ARATH,FBK65_ARATH,FBX9_ARATH,FB177_ARATH,Q9LUG3_ARATH,F4J085_ARATH Probable F-box protein At3g22720,F-box protein At3g22350,F-box protein At3g22700,Putative F-box protein At3g17480,Putative F-box/kelch-repeat protein At3g22730,Putative F-box only protein 9,Putative F-box protein At3g22710,F-box associated ubiquitination effector family protein,F-box and associated interaction domains-containing protein 44593,28999,40211,43444,42891,44166,38936,17962,44246 Probable F-box protein At3g22720,F-box protein At3g22350,F-box protein At3g22700,Putative F-box protein At3g17480,Putative F-box/kelch-repeat protein At3g22730,Putative F-box only protein 9,Putative F-box protein At3g22710,F-box associated ubiquitination effector family protein,F-box and associated interaction domains-containing protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2094409;,locus:2045039;,locus:2094334;,locus:4515103115;,locus:2087877; AT3G22720,AT3G22350,AT3G22700,AT3G17480,AT3G22730,AT2G04920,AT3G22710,AT3G23633 F-box associated NA NA NA NA NA NA NA ENOG411EBK7 CYP76C6,T27I15_130,''cytochrome P450,CYP76C1 A0A1P8ANS0,Q9LEX2,Q9LQ25,A0A1P8ANR9,A0A1P8B309 A0A1P8ANS0_ARATH,Q9LEX2_ARATH,Q9LQ25_ARATH,A0A1P8ANR9_ARATH,A0A1P8B309_ARATH Cytochrome P450, family 76, subfamily C, polypeptide 6,Cytochrome P450 monooxygenase-like protein (Cytochrome P450, family 76, subfamily C, polypeptide 7),Cytochrome P450, family 76, subfamily C, polypeptide 6 (Putative cytochrome P450),Cytochrome P450, family 76, subfamily C, polypeptide 1 ARA:AT3G61040-MONOMER;,ARA:AT1G33720-MONOMER; 42770,56533,57481,45720,26472 Cytochrome P450, family 76, subfamily C, polypeptide 6,Cytochrome P450 monooxygenase-like protein (Cytochrome P450, family 76, subfamily C, polypeptide 7),Cytochrome P450, family 76, subfamily C, polypeptide 6 (Putative cytochrome P450),Cytochrome P450, family 76, subfamily C, polypeptide 1 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2100982;,locus:2012693; AT3G61040,AT1G33720 (S)-N-methylcoclaurine 3'-hydroxylase isozyme NA NA NA NA NA NA NA ENOG411EBK0 Q9ZUA7,Q9M2J5,Q9LJB5,Q9M2J6,Q9M2J0,Q9LSD2,Q9M2I9,F4J4P8,F4J4A0,Q9M2J1,A0A1I9LMA6 MCC03_ARATH,MCC16_ARATH,MCC12_ARATH,MCC15_ARATH,MCC20_ARATH,MCC11_ARATH,MCC21_ARATH,MCC17_ARATH,MCC13_ARATH,MCC19_ARATH,A0A1I9LMA6_ARATH MATH domain and coiled-coil domain-containing protein At2g01790 (RTM3-like protein At2g01790),MATH domain and coiled-coil domain-containing protein At3g58210 (RTM3-like protein At3g58210),MATH domain and coiled-coil domain-containing protein At3g29580 (RTM3-like protein At3g29580),MATH domain and coiled-coil domain-containing protein At3g58200 (RTM3-like protein At3g58200),MATH domain and coiled-coil domain-containing protein At3g58260 (RTM3-like protein At3g58260),MATH domain and coiled-coil domain-containing protein At3g27040 (RTM3-like protein At3g27040),MATH domain and coiled-coil domain-containing protein At3g58270 (RTM3-like protein At3g58270),MATH domain and coiled-coil domain-containing protein At3g58220 (RTM3-like protein At3g58220),MATH domain and coiled-coil domain-containing protein At3g44790 (RTM3-like protein At3g44790),MATH domain and coiled-coil domain-containing protein At3g58250 (RTM3-like protein At3g58250),TRAF-like family protein 30515,37798,35040,36861,36257,31021,38583,35911,37263,34554,41265 MATH domain and coiled-coil domain-containing protein At2g01790 (RTM3-like protein At2g01790),MATH domain and coiled-coil domain-containing protein At3g58210 (RTM3-like protein At3g58210),MATH domain and coiled-coil domain-containing protein At3g29580 (RTM3-like protein At3g29580),MATH domain and coiled-coil domain-containing protein At3g58200 (RTM3-like protein At3g58200),MATH domain and coiled-coil domain-containing protein At3g58260 (RTM3-like protein At3g58260),MATH domain and coiled-coil domain-containing protein At3g27040 (RTM3-like protein At3g27040),MATH domain and coiled-coil domain-containing protein At3g58270 (RTM3-like protein At3g58270),MATH domain and coiled-coil domain-containing protein At3g58220 (RTM3-like protein At3g58220),MATH domain and coiled-coil domain-containing protein At3g44790 (RTM3-like protein At3g44790),MATH domain and coiled-coil domain-containing protein At3g58250 (RTM3-like protein At3g58250),TRAF-like family protein locus:2065455;,locus:2085445;,locus:2093650;,locus:2085430;,locus:2085370;,locus:2092000;,locus:2085385;,locus:2085460;,locus:2101625;,locus:2085355; AT2G01790,AT3G58210,AT3G29580,AT3G58200,AT3G58260,AT3G27040,AT3G58270,AT3G58220,AT3G44790,AT3G58250 MATH NA NA NA NA NA NA NA ENOG411EBK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBK2 CEP2 Q9STL4 CEP2_ARATH KDEL-tailed cysteine endopeptidase CEP2 (EC 3.4.22.-) FUNCTION: Involved in the final stage of developmental programmed cell death and in intercalation of new cells. Cleaves extensins, thus probably supporting the final cell collapse. {ECO:0000269|PubMed:21632425}. 3.4.22.- 40371 KDEL-tailed cysteine endopeptidase CEP2 (EC 3.4.22.-) endoplasmic reticulum [GO:0005783]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in roots, stems, rosette and cauline leaves, flowers, buds and green siliques. Found in the tip of young primary leaves, in very young root tips and at later stages in all tissues of lateral root, including the vascular bundle. Not expressed in lateral root primordia, while directly emerging through the epidermis. {ECO:0000269|PubMed:21632425}. locus:504955641; AT3G48340 Inhibitor_I29 NA NA NA NA NA NA NA ENOG411EBK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Probable E3 ubiquitin-protein ligase XBOS31 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS31) (RING-type E3 ubiquitin transferase XBOS31) (XB3 protein homolog 1) Q94CT7 XB31_ORYSJ XBOS31 Os01g0974400 LOC_Os01g74320 P0459B04.9 ENOG411EBK8 PHL13 F4J3P7,A0A1I9LQD6 PHLD_ARATH,A0A1I9LQD6_ARATH Myb family transcription factor PHL13 (Protein PHR1-LIKE 13),Homeodomain-like superfamily protein 49400,34562 Myb family transcription factor PHL13 (Protein PHR1-LIKE 13),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2100880; AT3G04450 Transcription factor NA NA NA NA NA NA NA ENOG411EBK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EBKA HSA32,SBT3.1 Q8GWL1,F4JJH4 HSA32_ARATH,SBT31_ARATH Protein HEAT-STRESS-ASSOCIATED 32 (Heat-stress-associated 32-kDa protein),Subtilisin-like protease SBT3.1 (EC 3.4.21.-) (Subtilase subfamily 3 member 1) (AtSBT3.1) DISRUPTION PHENOTYPE: Normal growth and development under nonstress conditions. Compromised acquired thermotolerance following a long recovery period (> 24 h) after acclimation heat shock (HS) treatment, but normal when challenged within a short recovery period (PubMed:16500991, PubMed:17085506). Reduced expression of several highly heat-inducible genes. Slight increased in sensitivity to HS without acclimation (PubMed:17085506). Faster degradation of HSP101 (PubMed:23439916). {ECO:0000269|PubMed:16500991, ECO:0000269|PubMed:17085506, ECO:0000269|PubMed:23439916}. under normal conditions hsa32-1 plants exhibited no obvious phenotypic difference in terms of germination time and rate growth rate time to flowering and seed yield as compared to the wild type. The acclimation treatment (37oC for 1 h recovery for 2 h at 22oC) led to enhanced tolerance of a similar level in the wild type and hsa32-1 against the HS challenge at 44oC up to 220 min but both lines were killed at 44oC for 250 min. However a great loss of thermotolerance was observed in the mutant if the challenge was applied after 48 h or 72 h of recovery. Sensitive to high temperature-S. Ko-2006 FUNCTION: Transactivator required, together with HSP101, for long-term acquired thermotolerance (LAT) maintenance, probably by regulating heat-inducible genes expression, thus being a cellular component of thermomemory. {ECO:0000269|PubMed:16500991, ECO:0000269|PubMed:17085506}. 3.4.21.- 32640,82638 Protein HEAT-STRESS-ASSOCIATED 32 (Heat-stress-associated 32-kDa protein),Subtilisin-like protease SBT3.1 (EC 3.4.21.-) (Subtilase subfamily 3 member 1) (AtSBT3.1) catalytic activity [GO:0003824]; heat acclimation [GO:0010286]; posttranscriptional regulation of gene expression [GO:0010608]; response to heat [GO:0009408],extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252]; pollen tube growth [GO:0009860] locus:2141196;,locus:505006503; AT4G21320,AT4G21323 (2R)-phospho-3-sulfolactate synthase (ComA) NA NA NA NA NA NA NA ENOG411EBKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) NA NA NA NA NA NA NA ENOG411EBKN AFP4 Q9S7Z2 AFP4_ARATH Ninja-family protein AFP4 (ABI five-binding protein 4) (ABI5-binding protein 4) (Protein TWO OR MORE ABRES-CONTAINING GENE 2) DISRUPTION PHENOTYPE: Exhibits insensitivity to abscisic acid (ABA) and salt. {ECO:0000269|PubMed:18484180}. Decreased germination on high concentrations of glucose and sorbitol. Insensitive to ABA; Resistant to salt; Sensitive to glucose and sorbitol-R. Finklestein-2008 FUNCTION: Acts as a negative regulator of abscisic acid (ABA) and salinity responses. {ECO:0000269|PubMed:17195036}. 35455 Ninja-family protein AFP4 (ABI five-binding protein 4) (ABI5-binding protein 4) (Protein TWO OR MORE ABRES-CONTAINING GENE 2) nucleus [GO:0005634]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; regulation of starch biosynthetic process [GO:0010581]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Predominantly expressed in roots and seedlings. {ECO:0000269|PubMed:17195036}. locus:2076502; AT3G02140 Two or more abres-containing gene 2 NA NA NA NA NA NA NA ENOG411EBKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EBKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DCD NA NA NA NA NA NA NA ENOG411EBKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os07g0633300 protein Q7XI48 Q7XI48_ORYSJ P0519E12.128 Os07g0633300 OsJ_25254 OSNPB_070633300 ENOG411EBKQ Q9C8D5 Q9C8D5_ARATH Uncharacterized protein F15E12.15 38504 Uncharacterized protein F15E12.15 locus:2013885; AT1G66110 Family of unknown function (DUF577) NA NA NA NA NA NA NA ENOG411EBKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E821 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0573200 protein Q7XBY8 Q7XBY8_ORYSJ Os10g0573200 LOC_Os10g42260 OsJ_32553 OSNPB_100573200 ENOG411E820 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0516700 protein Q75IJ0 Q75IJ0_ORYSJ Os05g0516700 B1130G10.12 OSNPB_050516700 ENOG411E823 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: intraflagellar transport 140 homolog (Chlamydomonas) NA NA NA NA NA NA NA ENOG411E822 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0147600 protein A0A0N7KCB9 A0A0N7KCB9_ORYSJ Os01g0147600 OSNPB_010147600 ENOG411E825 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0923000 protein (cDNA clone:J023064M05, full insert sequence) Q8RYH1 Q8RYH1_ORYSJ Os01g0923000 B1455F06.22 OsJ_04588 OSNPB_010923000 P0592G05.6 ENOG411E824 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0188100 protein (cDNA, clone: J080090D12, full insert sequence) Q0DK70 Q0DK70_ORYSJ Os05g0188100 Os05g0188100 OsJ_17393 OSNPB_050188100 ENOG411E827 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E826 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411E829 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0433300 protein A0A0P0WAH0 A0A0P0WAH0_ORYSJ Os04g0433300 OSNPB_040433300 ENOG411E82Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr Os11g0482200 protein (Fragment) A0A0N7KSX6 A0A0N7KSX6_ORYSJ Os11g0482200 OSNPB_110482200 ENOG411E82P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0234700 protein (cDNA clone:001-103-A10, full insert sequence) Q6EUK3 Q6EUK3_ORYSJ Os02g0234700 Os02g0234700 OJ1145_E05.8 OsJ_06007 OSNPB_020234700 ENOG411E82S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3681) Os04g0591500 protein A0A0P0WE55 A0A0P0WE55_ORYSJ Os04g0591500 OSNPB_040591500 ENOG411E82R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Non-specific lipid-transfer protein C4 (OsC4) Q6ZFW0 C4_ORYSJ C4 Os08g0546300 OJ1323_A06.22 OsJ_28169 FUNCTION: Lipid-transfer protein that may be regulated by the transcription factor UDT1 in developing anthers and play a role in tapetum development. {ECO:0000269|PubMed:16141453}. ENOG411E82U O22789,A0A1P8B099 O22789_ARATH,A0A1P8B099_ARATH Uncharacterized protein At2g33390,Uncharacterized protein 10849,10970 Uncharacterized protein At2g33390,Uncharacterized protein locus:2051144; AT2G33390 NA NA NA NA NA NA NA NA ENOG411E82T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E82W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E82V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os01g0635200 protein (cDNA clone:001-108-G06, full insert sequence) Q0JL02 Q0JL02_ORYSJ Os01g0635200 Os01g0635200 OSNPB_010635200 ENOG411E82Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Expressed protein (Os11g0648400 protein),Expressed protein (Os10g0540300 protein) (cDNA clone:001-039-E02, full insert sequence) (cDNA clone:J013066A01, full insert sequence) (cDNA clone:J023055M03, full insert sequence),Os11g0648800 protein (cDNA, clone: J090086L04, full insert sequence),Expressed protein (Os10g0540900 protein) (cDNA clone:J023135N08, full insert sequence),Os11g0648700 protein (Fragment),Os11g0648200 protein Q0IRC9,Q7XCM6,B7F9T8,Q336W6,A0A0P0Y4V2,A0A0P0Y4T1 Q0IRC9_ORYSJ,Q7XCM6_ORYSJ,B7F9T8_ORYSJ,Q336W6_ORYSJ,A0A0P0Y4V2_ORYSJ,A0A0P0Y4T1_ORYSJ Os11g0648400 LOC_Os11g42850 Os11g0648400 OSNPB_110648400,OSJNBb0064P21.4 LOC_Os10g39470 Os10g0540300 OsJ_32312 OSNPB_100540300,Os11g0648800 OsJ_34604 OSNPB_110648800,LOC_Os10g39510 Os10g0540900 OsJ_32314 OSNPB_100540900,Os11g0648700 OSNPB_110648700,Os11g0648200 OSNPB_110648200 ENOG411E82X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0860900 protein Q5N7B5 Q5N7B5_ORYSJ Os01g0860900 OSNPB_010860900 P0489B03.45 P0679C12.35 ENOG411E82Z PSK3 Q9M2Y0 PSK3_ARATH Phytosulfokines 3 (AtPSK3) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. 8897 Phytosulfokines 3 (AtPSK3) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] extracellular matrix [GO:0031012]; Golgi apparatus [GO:0005794]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; cell proliferation [GO:0008283]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed in roots, mature leaves, stems, flowers and siliques. Most abundant in vascular bundles. {ECO:0000269|PubMed:16829587}. locus:2097345; AT3G49780 Phytosulfokine precursor protein (PSK) NA NA NA NA NA NA NA ENOG411E82A WOX14,WOX10 Q9LM84,Q9LM83,A0A1P8AUV1,A0A1P8AUU8 WOX14_ARATH,WOX10_ARATH,A0A1P8AUV1_ARATH,A0A1P8AUU8_ARATH WUSCHEL-related homeobox 14 (Homeodomain protein PALE-2) (AtPALE2),Putative WUSCHEL-related homeobox 10,WUSCHEL related homeobox 14 Reduced fertility short siliques and aborted seeds. Late flowering. Reduced number of lateral roots.Short stamens. FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}.,FUNCTION: Potential transcription factor that plays a central role during developmental processes. {ECO:0000250}. 23976,22400,22959,16815 WUSCHEL-related homeobox 14 (Homeodomain protein PALE-2) (AtPALE2),Putative WUSCHEL-related homeobox 10,WUSCHEL related homeobox 14 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell division [GO:0051301]; phloem or xylem histogenesis [GO:0010087]; primary shoot apical meristem specification [GO:0010072]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2030467;,locus:2030487; AT1G20700,AT1G20710 Transcription factor NA NA NA NA NA NA NA ENOG411E82C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF NA NA NA NA NA NA NA ENOG411E82E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0558700 protein Q5JKR4 Q5JKR4_ORYSJ Os01g0558700 Os01g0558700 B1064G04.10 B1144D11.32 OSNPB_010558700 ENOG411E82D MKS1 Q8LGD5 MKS1_ARATH Protein MKS1 (Protein MAP kinase 4 substrate 1) (VQ motif-containing protein 21) (AtVQ21) Susceptible to Pseudomonas syringae-M. Peterson-2010 FUNCTION: Regulator of plant defense response. May contribute to MPK4-regulated defense activation by coupling the kinase to specific WRKY transcription factors. {ECO:0000269|PubMed:15990873}. 23582 Protein MKS1 (Protein MAP kinase 4 substrate 1) (VQ motif-containing protein 21) (AtVQ21) nucleus [GO:0005634]; defense response [GO:0006952]; defense response signaling pathway, resistance gene-dependent [GO:0009870] locus:2093959; AT3G18690 MAP kinase substrate 1 NA NA NA NA NA NA NA ENOG411E82G EPFL2 Q9T068 EPFL2_ARATH EPIDERMAL PATTERNING FACTOR-like protein 2 (EPF-like protein 2) [Cleaved into: MEPFL2] FUNCTION: Controls stomatal patterning. {ECO:0000250}. 14318 EPIDERMAL PATTERNING FACTOR-like protein 2 (EPF-like protein 2) [Cleaved into: MEPFL2] extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; stomatal complex development [GO:0010374] locus:2137614; AT4G37810 Inherit from euNOG: epidermal patterning factor-like protein NA NA NA NA NA NA NA ENOG411E82F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) Os05g0103300 protein (cDNA clone:001-109-G10, full insert sequence) (cDNA clone:J023101E05, full insert sequence) Q75M31 Q75M31_ORYSJ Os05g0103300 Os05g0103300 OsJ_16790 OSNPB_050103300 P0668H12.7 ENOG411E82I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os03g0375717 protein (Fragment) A0A0P0VYV3 A0A0P0VYV3_ORYSJ Os03g0375717 OSNPB_030375717 ENOG411E82H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Glutathione S-transferase C-terminal domain containing NA NA NA NA NA NA NA ENOG411E82K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E82J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabinogalactan peptide Os01g0657000 protein (cDNA clone:002-150-C11, full insert sequence) Q94DB9 Q94DB9_ORYSJ Os01g0657000 Os01g0657000 OsJ_02879 OSNPB_010657000 P0694A04.20 ENOG411E82M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHQ O80571 O80571_ARATH At2g44010 (Uncharacterized protein At2g44010) 11517 At2g44010 (Uncharacterized protein At2g44010) floral organ abscission [GO:0010227] locus:2051794; AT2G44010 NA NA NA NA NA NA NA NA ENOG411EGHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3444) NA NA NA NA NA NA NA ENOG411EGHS Q8GYN8 Q8GYN8_ARATH Stress induced protein (Uncharacterized protein At5g25240) (Uncharacterized protein At5g25240/F21J6_107) 15089 Stress induced protein (Uncharacterized protein At5g25240) (Uncharacterized protein At5g25240/F21J6_107) locus:2146955; AT5G25240 BEST Arabidopsis thaliana protein match is NHL repeat-containing protein (TAIR AT5G14890.1) NA NA NA NA NA NA NA ENOG411EGHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class I (I L M and V) NA NA NA NA NA NA NA ENOG411EGHU RTNLB15 Q9ZU43 RTNLO_ARATH Reticulon-like protein B15 (AtRTNLB15) 21859 Reticulon-like protein B15 (AtRTNLB15) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] AT2G01240 Reticulon NA NA NA NA NA NA NA ENOG411EGHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO NA NA NA NA NA NA NA ENOG411EGHX F26K9_70 Q9LZK1 Q9LZK1_ARATH At3g62640 (DUF3511 domain protein (DUF3511)) (Uncharacterized protein At3g62640/F26K9_70) (Uncharacterized protein F26K9_70) 12318 At3g62640 (DUF3511 domain protein (DUF3511)) (Uncharacterized protein At3g62640/F26K9_70) (Uncharacterized protein F26K9_70) locus:2081630; AT3G62640 Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411EGHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHZ VQ1 Q1G3U8 VQ1_ARATH VQ motif-containing protein 1 (AtVQ1) FUNCTION: May modulate WRKY transcription factor activities. {ECO:0000250|UniProtKB:Q9M9F0}. 10895 VQ motif-containing protein 1 (AtVQ1) nucleus [GO:0005634] locus:4515102541; AT1G17147 BEST Arabidopsis thaliana protein match is VQ motif-containing protein (TAIR AT1G78410.1) NA NA NA NA NA NA NA ENOG411EGHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 Os02g0225100 protein Q6Z8A9 Q6Z8A9_ORYSJ Os02g0225100 OSNPB_020225100 P0470A03.29 P0495C02.7 ENOG411EGHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHD Q8VZ24 Q8VZ24_ARATH Gelsolin protein (Uncharacterized protein At4g11100) 32321 Gelsolin protein (Uncharacterized protein At4g11100) locus:2136123; AT4G11100 NA NA NA NA NA NA NA NA ENOG411EGHE RPP1B,RPP1C,RPP1A O23095,Q8LEQ0,Q8LCW9,A8MQK8 RLA12_ARATH,RLA13_ARATH,RLA11_ARATH,A8MQK8_ARATH 60S acidic ribosomal protein P1-2,60S acidic ribosomal protein P1-3,60S acidic ribosomal protein P1-1,60S acidic ribosomal protein family FUNCTION: Plays an important role in the elongation step of protein synthesis. {ECO:0000250}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 11307,11247,11162,10000 60S acidic ribosomal protein P1-2,60S acidic ribosomal protein P1-3,60S acidic ribosomal protein P1-1,60S acidic ribosomal protein family cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; protein kinase activator activity [GO:0030295]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; positive regulation of protein kinase activity [GO:0045860]; translational elongation [GO:0006414],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein kinase activator activity [GO:0030295]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; positive regulation of protein kinase activity [GO:0045860]; translational elongation [GO:0006414],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; protein kinase activator activity [GO:0030295]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; positive regulation of protein kinase activity [GO:0045860]; ribosome assembly [GO:0042255]; translational elongation [GO:0006414],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translational elongation [GO:0006414] locus:2134608;,locus:2160862;,locus:2200985; AT4G00810,AT5G47700,AT1G01100 60S acidic ribosomal protein NA NA NA NA NA NA NA ENOG411EGHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Hydroxyproline-rich glycoprotein DZ-HRGP-related) (Os11g0160400 protein) (cDNA clone:002-154-B12, full insert sequence) Q53PL2 Q53PL2_ORYSJ Os11g0160400 LOC_Os11g06150 Os11g0160400 OSNPB_110160400 ENOG411EGHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Meltrins fertilins and related Zn-dependent metalloproteinases of the ADAMs family (ISS) NA NA NA NA NA NA NA ENOG411EGHI Q9MAD2 Q9MAD2_ARATH Splicing regulatory glutamine/lysine-rich-like protein (T4P13.8 protein) (Uncharacterized protein At3g01230) 14616 Splicing regulatory glutamine/lysine-rich-like protein (T4P13.8 protein) (Uncharacterized protein At3g01230) locus:2102182; AT3G01230 NA NA NA NA NA NA NA NA ENOG411EGHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0350500 protein (Fragment) A0A0P0V2L6 A0A0P0V2L6_ORYSJ Os01g0350500 OSNPB_010350500 ENOG411EGHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGH1 Q1PFR2,Q45GN7,Q45GN6,Q1PFR0,Q5BPU6,F4HY84 Q1PFR2_ARATH,Q45GN7_ARATH,Q45GN6_ARATH,Q1PFR0_ARATH,Q5BPU6_ARATH,F4HY84_ARATH Transcriptional regulator EFH1-like protein,Expressed protein (Transcriptional regulator EFH1-like protein),Repressor ROX1-like protein 39873,40527,34909,36133,48169,63615 Transcriptional regulator EFH1-like protein,Expressed protein (Transcriptional regulator EFH1-like protein),Repressor ROX1-like protein locus:2029426;,locus:2018723; AT1G28630,AT1G77960 NA NA NA NA NA NA NA NA ENOG411EGH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein conserved in bacteria (DUF2064) NA NA NA NA NA NA NA ENOG411EGH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0626532 protein,Os12g0521101 protein A0A0P0VM18,A0A0P0YB53 A0A0P0VM18_ORYSJ,A0A0P0YB53_ORYSJ Os02g0626532 OSNPB_020626532,Os12g0521101 OSNPB_120521101 ENOG411EGH5 Q1G3W7 Q1G3W7_ARATH Transcription repressor OFP17-like protein 20089 Transcription repressor OFP17-like protein locus:1009023088; AT1G06923 NA NA NA NA NA NA NA NA ENOG411EGH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGH7 dl3050c O23263 O23263_ARATH At4g14020 (Rapid alkalinization factor (RALF) family protein) (Uncharacterized protein AT4g14020) (Uncharacterized protein dl3050c) 12790 At4g14020 (Rapid alkalinization factor (RALF) family protein) (Uncharacterized protein AT4g14020) (Uncharacterized protein dl3050c) intracellular [GO:0005622]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722] locus:2129346; AT4G14020 Rapid alkalinization factor (RALF) family protein NA NA NA NA NA NA NA ENOG411EGH8 Q9C7Q3 Q9C7Q3_ARATH Uncharacterized protein F15D2.6 26106 Uncharacterized protein F15D2.6 locus:2013643; AT1G29480 NA NA NA NA NA NA NA NA ENOG411EGH9 Q8L7G2,O65707 Q8L7G2_ARATH,O65707_ARATH SCD6 protein-like protein (Uncharacterized protein At4g19360),SCD6 protein-like protein (Uncharacterized protein AT4g19360) 18880,29999 SCD6 protein-like protein (Uncharacterized protein At4g19360),SCD6 protein-like protein (Uncharacterized protein AT4g19360) locus:2140376; AT4G19360 Inherit from KOG: LSM14A SCD6 homolog A (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EAAH Q9SL83 Q9SL83_ARATH At2g19970 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (Putative pathogenesis-related protein) 19953 At2g19970 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (Putative pathogenesis-related protein) locus:2061693; AT2G19970 SCP NA NA NA NA NA NA NA ENOG411EE0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EE0K Q8VYT1 Q8VYT1_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g66900) 30207 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g66900) hydrolase activity [GO:0016787] locus:2204455; AT1G66900 Has 2819 Blast hits to 2817 proteins in 490 species Archae - 0 NA NA NA NA NA NA NA ENOG411EE0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0506300 protein,Os06g0716600 protein A0A0P0Y2I2,A0A0P0X0Z5 A0A0P0Y2I2_ORYSJ,A0A0P0X0Z5_ORYSJ Os11g0506300 OSNPB_110506300,Os06g0716600 OSNPB_060716600 ENOG411EE0N ERF104 Q9FKG1 EF104_ARATH Ethylene-responsive transcription factor ERF104 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 26825 Ethylene-responsive transcription factor ERF104 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell division [GO:0051301]; defense response to fungus [GO:0050832]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944] locus:2151591; AT5G61600 AP2 NA NA NA NA NA NA NA ENOG411EE0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein NA NA NA NA NA NA NA ENOG411EE0C Q9FLA2,Q9FLA1,Q9C6W9,Q9FLA3,Q8H1M0,Q9FL99,A0A1P8BAS3,Q9FLA0,F4ITL1,A0A1P8AXJ3,A0A1P8AXL6,A0A178VIK9,F4JA00 FDL34_ARATH,FDL35_ARATH,FB28_ARATH,FBD42_ARATH,FDL16_ARATH,FDL36_ARATH,A0A1P8BAS3_ARATH,Q9FLA0_ARATH,F4ITL1_ARATH,A0A1P8AXJ3_ARATH,A0A1P8AXL6_ARATH,A0A178VIK9_ARATH,F4JA00_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950,Putative F-box/FBD/LRR-repeat protein At5g44960,Putative F-box protein At1g32020,Putative FBD-associated F-box protein At5g44940,F-box/FBD/LRR-repeat protein At2g26030,F-box/FBD/LRR-repeat protein At5g44980,F-box/RNI-like/FBD-like domains-containing protein,Protein with RNI-like/FBD-like domain (Similarity to heat shock transcription factor),F-box/RNI/FBD-like domain protein 50377,50766,19495,44103,51454,50996,36166,44474,42843,33325,52087,20239,20108 Putative F-box/FBD/LRR-repeat protein At5g44950,Putative F-box/FBD/LRR-repeat protein At5g44960,Putative F-box protein At1g32020,Putative FBD-associated F-box protein At5g44940,F-box/FBD/LRR-repeat protein At2g26030,F-box/FBD/LRR-repeat protein At5g44980,F-box/RNI-like/FBD-like domains-containing protein,Protein with RNI-like/FBD-like domain (Similarity to heat shock transcription factor),F-box/RNI/FBD-like domain protein locus:2155327;,locus:2195386;,locus:2155312;,locus:2057422;,locus:2155367;,locus:2155357;,locus:2085904; AT5G44950,AT5G44960,AT1G32020,AT5G44940,AT2G26030,AT5G44980,AT5G44970,AT3G19085 FBD NA NA NA NA NA NA NA ENOG411EE0A MAP70.4,MAP70-4 Q9LQU7,F4HXV4 MP704_ARATH,F4HXV4_ARATH Microtubule-associated protein 70-4 (AtMAP70-4) (70 kDa microtubule-associated protein 4),Microtubule-associated proteins 70-4 FUNCTION: Plant-specific protein that interact with microtubules. {ECO:0000250}. 67488,65518 Microtubule-associated protein 70-4 (AtMAP70-4) (70 kDa microtubule-associated protein 4),Microtubule-associated proteins 70-4 cytoplasm [GO:0005737]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; microtubule binding [GO:0008017]; cytoskeleton organization [GO:0007010],microtubule binding [GO:0008017]; cytoskeleton organization [GO:0007010] locus:2006787; AT1G14840 microtubule-associated proteins 70-4 NA NA NA NA NA NA NA ENOG411EE0Z MSL9 Q84M97 MSL9_ARATH Mechanosensitive ion channel protein 9 (Mechanosensitive channel of small conductance-like 9) (MscS-Like protein 9) (AtMSL9) Shifts single-channel amplitude peak from 10pa(WT) to 19.9pa.,Abolished stretch-activate mechanosensitive channel activity,Reduced stretch-activated mechanosensitive channel activity. Abnormal stretch-activated channel activity-J. Frachisse-2008 FUNCTION: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. {ECO:0000269|PubMed:18485707, ECO:0000269|PubMed:19704841}. 84249 Mechanosensitive ion channel protein 9 (Mechanosensitive channel of small conductance-like 9) (MscS-Like protein 9) (AtMSL9) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; mechanically-gated ion channel activity [GO:0008381]; anion transport [GO:0006820]; detection of mechanical stimulus [GO:0050982]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Detected in the epidermis, cortex, and endodermis of the root tip. {ECO:0000269|PubMed:18485707}. locus:2180811; AT5G19520 mechanosensitive channel of small conductance-like 9 NA NA NA NA NA NA NA ENOG411EE0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha adaptin AP2 C-terminal domain Os03g0112400 protein (Fragment) Q0DVU5 Q0DVU5_ORYSJ Os03g0112400 OSNPB_030112400 ENOG411EE0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase family NA NA NA NA NA NA NA ENOG411EE0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family NA NA NA NA NA NA NA ENOG411EE0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAF domain NA NA NA NA NA NA NA ENOG411EE0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411EE0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cofilin/tropomyosin-type actin-binding protein NA NA NA NA NA NA NA ENOG411EE08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA R-linalool synthase NA NA NA NA NA NA NA ENOG411EE09 REM7,REM13,REM15.15,REM14 Q8H2D0,F4KFT6,P0CAP5,O23076,Q8GYM4,F4IQL7,A0A1P8AYS0,A0A1P8B210,A0A1P8AYU9,A0A1P8AYQ9,A0A1P8B205,A0A1P8B219,A0A1P8B214,A0A1P8B255,A0A1P8B216 REM7_ARATH,REML3_ARATH,REM13_ARATH,REM15_ARATH,REM14_ARATH,REML2_ARATH,A0A1P8AYS0_ARATH,A0A1P8B210_ARATH,A0A1P8AYU9_ARATH,A0A1P8AYQ9_ARATH,A0A1P8B205_ARATH,A0A1P8B219_ARATH,A0A1P8B214_ARATH,A0A1P8B255_ARATH,A0A1P8B216_ARATH B3 domain-containing protein REM7 (Auxin response factor 25) (Protein REPRODUCTIVE MERISTEM 7),B3 domain-containing protein REM-like 3 (Protein REPRODUCTIVE MERISTEM-like 3),B3 domain-containing protein REM13 (Protein REPRODUCTIVE MERISTEM 13),Putative B3 domain-containing protein REM15 (Protein REPRODUCTIVE MERISTEM 15),B3 domain-containing protein REM14 (Protein REPRODUCTIVE MERISTEM 14),B3 domain-containing protein REM-like 2 (Protein REPRODUCTIVE MERISTEM-like 2),Transcriptional factor B3 family protein,B3 domain-containing protein REM13 28758,60888,117805,60035,55530,42838,53966,95212,56547,47190,113302,97628,108011,115718,110097 B3 domain-containing protein REM7 (Auxin response factor 25) (Protein REPRODUCTIVE MERISTEM 7),B3 domain-containing protein REM-like 3 (Protein REPRODUCTIVE MERISTEM-like 3),B3 domain-containing protein REM13 (Protein REPRODUCTIVE MERISTEM 13),Putative B3 domain-containing protein REM15 (Protein REPRODUCTIVE MERISTEM 15),B3 domain-containing protein REM14 (Protein REPRODUCTIVE MERISTEM 14),B3 domain-containing protein REM-like 2 (Protein REPRODUCTIVE MERISTEM-like 2),Transcriptional factor B3 family protein,B3 domain-containing protein REM13 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2124794;,locus:2145811;,locus:2046668;,locus:2126016;,locus:6530298182;,locus:1006230049; AT4G31660,AT5G32460,AT2G24650,AT4G00260,AT2G24645,AT2G24696 maternal effect embryo arrest 45 NA NA NA NA NA NA NA ENOG411EE02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EE03 BS,TPS13,TPS12 Q4KSH9,Q9T0K1,Q9T0J9,Q9ZQD0 BARS_ARATH,GBIS2_ARATH,GBIS1_ARATH,Q9ZQD0_ARATH Alpha-barbatene synthase (AtBS) (EC 4.2.3.69) (Beta-chamigrene synthase) (EC 4.2.3.78) (Terpeneoid synthase 11) (AtTPS11) (Thujopsene synthase) (EC 4.2.3.79),(Z)-gamma-bisabolene synthase 2 (EC 4.2.3.40) (Terpenoid synthase 13) (AtTPS13),(Z)-gamma-bisabolene synthase 1 (EC 4.2.3.40) (Terpenoid synthase 12) (AtTPS12),Putative vetispiradiene synthase (Terpenoid synthases superfamily protein) DISRUPTION PHENOTYPE: Does not emit any sesquiterpene volatiles except (E)-beta-caryophyllene, alpha-copaene and alpha-humulene. {ECO:0000269|PubMed:15918888}. FUNCTION: Involved in the biosynthesis of over 15 sesquiterpenes (C15). The major products are (+)-alpha-barbatene (27.3%), (+)-thujopsene (17.8%) and (+)-beta-chamigrene (9.9%). Can use farnesyl diphosphate or geranyl diphosphate as substrates, but not geranylgeranyl diphosphate. {ECO:0000269|PubMed:15918888, ECO:0000269|PubMed:15965019}.,FUNCTION: Involved in sesquiterpene (C15) biosynthesis. The major product is (Z)-gamma-bisabolene with minor amounts of (E)-nerolidol and alpha-bisabolol. {ECO:0000269|PubMed:16297850}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT5G44630-MONOMER;MetaCyc:AT5G44630-MONOMER;,ARA:AT4G13300-MONOMER;MetaCyc:AT4G13300-MONOMER;,ARA:AT4G13280-MONOMER;MetaCyc:AT4G13280-MONOMER; 4.2.3.69;4.2.3.78;4.2.3.79; 4.2.3.69; 4.2.3.78; 4.2.3.79,4.2.3.40 64909,64145,63851,12493 Alpha-barbatene synthase (AtBS) (EC 4.2.3.69) (Beta-chamigrene synthase) (EC 4.2.3.78) (Terpeneoid synthase 11) (AtTPS11) (Thujopsene synthase) (EC 4.2.3.79),(Z)-gamma-bisabolene synthase 2 (EC 4.2.3.40) (Terpenoid synthase 13) (AtTPS13),(Z)-gamma-bisabolene synthase 1 (EC 4.2.3.40) (Terpenoid synthase 12) (AtTPS12),Putative vetispiradiene synthase (Terpenoid synthases superfamily protein) cytoplasm [GO:0005737]; plasmodesma [GO:0009506]; (+)-alpha-barbatene synthase activity [GO:0102878]; (+)-beta-chamigrene synthase activity [GO:0102883]; (+)-thujopsene synthase activity [GO:0102879]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; sesquiterpene biosynthetic process [GO:0051762]; sesquiterpenoid biosynthetic process [GO:0016106],cytoplasm [GO:0005737]; (Z)-gamma-bisabolene synthase activity [GO:0052683]; cyclase activity [GO:0009975]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; farnesyl diphosphate metabolic process [GO:0045338]; response to wounding [GO:0009611]; sesquiterpenoid biosynthetic process [GO:0016106],peroxisome [GO:0005777]; (Z)-gamma-bisabolene synthase activity [GO:0052683]; cyclase activity [GO:0009975]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; farnesyl diphosphate metabolic process [GO:0045338]; response to wounding [GO:0009611]; sesquiterpenoid biosynthetic process [GO:0016106],magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333] TISSUE SPECIFICITY: Expressed exclusively in flowers. Expressed in intrafloral nectaries and in the funiculus within the ovules. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:15918888}.,TISSUE SPECIFICITY: Predominantly expressed in roots. Expressed in the cortex and the sub-epidermal layers of roots. Also detected in leaf hydathodes and flower stigmata. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:16297850}. locus:2152155;,locus:2142065;,locus:2142045;,locus:2061784; AT5G44630,AT4G13300,AT4G13280,AT2G37140 terpene synthase cyclase family protein NA NA NA NA NA NA NA ENOG411EE00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EE01 BCA6 Q9C6F5,A0A1P8ANM5 BCA6_ARATH,A0A1P8ANM5_ARATH Beta carbonic anhydrase 6, mitochondrial (AtbCA6) (AtbetaCA6) (EC 4.2.1.1) (Beta carbonate dehydratase 6),Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000250}.,FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000256|RuleBase:RU003956}. ARA:AT1G58180-MONOMER; 4.2.1.1 33072,31364 Beta carbonic anhydrase 6, mitochondrial (AtbCA6) (AtbetaCA6) (EC 4.2.1.1) (Beta carbonate dehydratase 6),Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) mitochondrion [GO:0005739]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976],carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976] TISSUE SPECIFICITY: Strongly expressed in aerial tissues including leaves, stems, flowers and siliques, and, to a lower extent, in roots. Accumulates in guard cells. {ECO:0000269|PubMed:17407539, ECO:0000269|PubMed:20010812}. locus:2196292; AT1G58180 carbonic anhydrase NA NA NA NA NA NA NA ENOG411EE06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os07g0192800 protein A0A0N7KN26 A0A0N7KN26_ORYSJ Os07g0192800 OSNPB_070192800 ENOG411EE04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD NA NA NA NA NA NA NA ENOG411EE05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Ac NA NA NA NA NA NA NA ENOG411E0HH Q9FLE8 Y5986_ARATH Uncharacterized protein At5g39865 43944 Uncharacterized protein At5g39865 plasma membrane [GO:0005886]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:504954828; AT5G39865 Glutaredoxin Glutaredoxin family protein (Os03g0170800 protein) Q8S7X1 Q8S7X1_ORYSJ OSJNBa0091P11.17 Os03g0170800 LOC_Os03g07470 OsJ_09583 OSNPB_030170800 ENOG411E4UA Q8L6Z1,Q8LCY3 Q8L6Z1_ARATH,Q8LCY3_ARATH NADH-ubiquinone oxidoreductase chain (Uncharacterized protein At1g20460),At1g76185 (NADH-ubiquinone oxidoreductase chain) (Uncharacterized protein At1g76185) 12409,12425 NADH-ubiquinone oxidoreductase chain (Uncharacterized protein At1g20460),At1g76185 (NADH-ubiquinone oxidoreductase chain) (Uncharacterized protein At1g76185) integral component of membrane [GO:0016021] locus:2034362;,locus:505006224; AT1G20460,AT1G76185 NA NA NA NA NA NA NA NA ENOG411E4UB Q6NM81,O49443 Q6NM81_ARATH,O49443_ARATH At4g28330 (Pyrroline-5-carboxylate reductase),Pyrroline-5-carboxylate reductase (Uncharacterized protein AT4g28340) (Uncharacterized protein F20O9.20) 17461,17635 At4g28330 (Pyrroline-5-carboxylate reductase),Pyrroline-5-carboxylate reductase (Uncharacterized protein AT4g28340) (Uncharacterized protein F20O9.20) integral component of membrane [GO:0016021] locus:2121397;,locus:2121402; AT4G28330,AT4G28340 NA Os12g0295600 protein C7J9S8 C7J9S8_ORYSJ Os12g0295600 Os12g0295600 OSNPB_120295600 ENOG411E4UC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein Expressed protein (Os12g0616800 protein) (cDNA clone:J023043J24, full insert sequence),Os03g0644600 protein Q2QM56,Q60DN1 Q2QM56_ORYSJ,Q60DN1_ORYSJ LOC_Os12g42220 Os12g0616800 OSNPB_120616800,Os03g0644600 LOC_Os03g44250 OsJ_11881 OSJNBa0038E17.27 OSNPB_030644600 ENOG411E4UD O64870 O64870_ARATH Ecotropic viral integration site protein (Uncharacterized protein At2g44360) 14592 Ecotropic viral integration site protein (Uncharacterized protein At2g44360) locus:2050569; AT2G44360 NA Os09g0553800 protein (Fragment) Q0IZR8 Q0IZR8_ORYSJ Os09g0553800 OSNPB_090553800 ENOG411E4UE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor Transcription factor PCF1,Os04g0194600 protein (Fragment) O23875,A0A0P0W7T3 PCF1_ORYSJ,A0A0P0W7T3_ORYSJ PCF1 Os04g0194600 LOC_Os04g11830 OSJNBa0040D17.14 OSJNBb0026E15.1,Os04g0194600 OSNPB_040194600 FUNCTION: Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. ENOG411E4UF RPL37AB,RPL37AC Q9SRK6,Q8RXU5 R37A1_ARATH,R37A2_ARATH Putative 60S ribosomal protein L37a-1,60S ribosomal protein L37a-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 10445,10241 Putative 60S ribosomal protein L37a-1,60S ribosomal protein L37a-2 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2085532;,locus:505006406; AT3G10950,AT3G60245 60S ribosomal protein L37a 60S ribosomal protein L37a-2,60S ribosomal protein L37a-1,Os01g0679700 protein (Fragment) P0DKK2,P0DKK1,A0A0N7KDI2 RL372_ORYSJ,RL371_ORYSJ,A0A0N7KDI2_ORYSJ Os05g0557000 LOC_Os05g48320 OJ1214_E03.13 OsJ_018715,Os01g0679700 LOC_Os01g48770 B1144G04.40-1 OsJ_03011,Os01g0679700 OSNPB_010679700 ENOG411E4UG MIA40 Q8GYJ4 MIA40_ARATH Mitochondrial intermembrane space import and assembly protein 40 homolog (AtMIA40) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20829360}. FUNCTION: Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (Probable). Involved in the mitochondrial oxidative folding of the copper-zinc superoxide dismutase CSD1, the copper chaperone for superoxide dismutase CCS, and subunits of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). Involved in the peroxisomal oxidative folding of the copper-zinc superoxide dismutase CSD3, and the fatty acid beta-oxidation multifunctional protein AIM1 (PubMed:20829360). {ECO:0000269|PubMed:20829360, ECO:0000305}. 17367 Mitochondrial intermembrane space import and assembly protein 40 homolog (AtMIA40) mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; peroxisomal matrix [GO:0005782]; peroxisome [GO:0005777]; oxidoreductase activity [GO:0016491]; protein targeting to mitochondrion [GO:0006626]; protein targeting to peroxisome [GO:0006625] locus:504956369; AT5G23395 mitochondrial intermembrane space import and assembly protein 40-like Mitochondrial intermembrane space import and assembly protein 40 homolog (OsMIA40) Q7XKI7 MIA40_ORYSJ MIA40 Os04g0527700 LOC_Os04g44550 OsJ_15538 OSJNBa0038O10.21 FUNCTION: Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space. {ECO:0000305}. ENOG411E4UH FAF3 Q6NMR8 FAF3_ARATH Protein FANTASTIC FOUR 3 DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with other FAF genes. {ECO:0000269|PubMed:21176196}. FUNCTION: Able to repress WUS when constitutively overexpressed, but have no effect on CLV3. {ECO:0000269|PubMed:21176196}. 32102 Protein FANTASTIC FOUR 3 DEVELOPMENTAL STAGE: Expressed throughout development. Decreased expression in the shoot apex during the transition to flowering. Expressed in developing embryos from the early heart stage until torpedo stage. {ECO:0000269|PubMed:21176196}. TISSUE SPECIFICITY: Expressed in the shoot apex, stamens, young leaves and young siliques, but not in old leaves. Detected in provascular and vascular tissue, but not in the vegetative meristem. In inflorescences, restricted to the vasculature and absent from young flowers, except from anthers. {ECO:0000269|PubMed:21176196}. locus:2150205; AT5G19260 Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411E4UI ATG8I Q9LRP7 ATG8I_ARATH Autophagy-related protein 8i (Autophagy-related ubiquitin-like modifier ATG8i) (AtAPG8i) (Protein autophagy 8i) FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. R-ATH-1632852;R-ATH-8854214; 13251 Autophagy-related protein 8i (Autophagy-related ubiquitin-like modifier ATG8i) (AtAPG8i) (Protein autophagy 8i) autophagosome membrane [GO:0000421]; cytoplasmic vesicle [GO:0031410]; microtubule [GO:0005874]; Atg8 activating enzyme activity [GO:0019779]; Atg8 ligase activity [GO:0019776]; Atg8-specific protease activity [GO:0019786]; autophagy [GO:0006914]; cellular response to nitrogen starvation [GO:0006995]; protein transport [GO:0015031] TISSUE SPECIFICITY: Contitutively expressed. {ECO:0000269|PubMed:15494556}. locus:2092560; AT3G15580 autophagy-related protein Autophagy-related protein 8D (Autophagy-related ubiquitin-like modifier ATG8D),Os11g0100100 protein Q2RBS4,A0A0P0XYC2 ATG8D_ORYSJ,A0A0P0XYC2_ORYSJ ATG8D APG8D Os11g0100100 LOC_Os11g01010 OSJNBa0029D01,Os11g0100100 OSNPB_110100100 FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. ENOG411E4UJ MBM17.11 F4KC77 F4KC77_ARATH U2 small nuclear ribonucleoprotein auxiliary factor-like protein 26164 U2 small nuclear ribonucleoprotein auxiliary factor-like protein intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]; response to water deprivation [GO:0009414]; stomatal closure [GO:0090332] locus:2160786; AT5G64010 NA Os04g0693250 protein,Os04g0693200 protein B9FDT3,A0A0P0WGU6 B9FDT3_ORYSJ,A0A0P0WGU6_ORYSJ Os04g0693250 OsJ_16764 OSNPB_040693250,Os04g0693200 OSNPB_040693200 ENOG411E4UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4UM ERF5 O80341 EF102_ARATH Ethylene-responsive transcription factor 5 (AtERF5) (Ethylene-responsive element-binding factor 5) (EREBP-5) FUNCTION: Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. 33810 Ethylene-responsive transcription factor 5 (AtERF5) (Ethylene-responsive element-binding factor 5) (EREBP-5) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] locus:2171529; AT5G47230 Transcription factor NA NA NA NA NA NA NA ENOG411E4UN HSP15.4 O49710 HS154_ARATH 15.4 kDa class V heat shock protein (15.4 kDa heat shock protein) (AtHsp15.4) 15387 15.4 kDa class V heat shock protein (15.4 kDa heat shock protein) (AtHsp15.4) cytoplasm [GO:0005737]; response to heat [GO:0009408] locus:2141632; AT4G21870 kDa class V heat shock 18.8 kDa class V heat shock protein (18.8 kDa heat shock protein) (OsHsp18.8),Os07g0517100 protein Q7EZ57,A0A0P0X6E0 HS188_ORYSJ,A0A0P0X6E0_ORYSJ HSP18.8 Os07g0517100 LOC_Os07g33350 OsJ_24457 OSJNBa0036M16.111-1 OSJNBa0036M16.111-2 P0650C03.26-1 P0650C03.26-2,Os07g0517100 OSNPB_070517100 ENOG411E4UP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os02g0191600 protein (Fragment) A0A0P0VFR9 A0A0P0VFR9_ORYSJ Os02g0191600 OSNPB_020191600 ENOG411E4UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0149000 protein (cDNA clone:002-175-C01, full insert sequence) Q65XE9 Q65XE9_ORYSJ Os05g0149000 OJ1504_G04.4 OSNPB_050149000 ENOG411E4UR MTI20.17 Q9FJM4,Q8GW24,Q9M097,A0A1P8B3Z2 Q9FJM4_ARATH,Q8GW24_ARATH,Q9M097_ARATH,A0A1P8B3Z2_ARATH Emb|CAB79781.1 (Ribosomal RNA small subunit methyltransferase G),At5g57910 (Ribosomal RNA small subunit methyltransferase G) (Uncharacterized protein At5g57910/MTI20_17),At4g30630 (Uncharacterized protein AT4g30630),Uncharacterized protein 19244,24093,26900,22036 Emb|CAB79781.1 (Ribosomal RNA small subunit methyltransferase G),At5g57910 (Ribosomal RNA small subunit methyltransferase G) (Uncharacterized protein At5g57910/MTI20_17),At4g30630 (Uncharacterized protein AT4g30630),Uncharacterized protein methyltransferase activity [GO:0008168] locus:2174413;,locus:2118731; AT5G57910,AT4G30630 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E4US F22O6_160 Q9SVC7 Q9SVC7_ARATH Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein F22O6_160) 33152 Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein F22O6_160) integral component of membrane [GO:0016021] locus:2079974; AT3G52460 NA NA NA NA NA NA NA NA ENOG411E4UT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mitochondrial outer membrane protein porin NA NA NA NA NA NA NA ENOG411E4UU PGR5 Q9SL05 PGR5_ARATH Protein PROTON GRADIENT REGULATION 5, chloroplastic FUNCTION: Involved in the regulation of the cyclic electron flow (CEF) around Photosystem I. Essential for the reduction of PGRL1A by ferredoxin and for photoprotection. {ECO:0000269|PubMed:12176323, ECO:0000269|PubMed:17803955, ECO:0000269|PubMed:17913767, ECO:0000269|PubMed:23290914}. 14293 Protein PROTON GRADIENT REGULATION 5, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; electron carrier activity [GO:0009055]; cellular response to light intensity [GO:0071484]; photoprotection [GO:0010117]; photosynthetic electron transport in photosystem I [GO:0009773]; response to high light intensity [GO:0009644]; response to water deprivation [GO:0009414] locus:2058974; AT2G05620 proton gradient regulation 5 Os08g0566600 protein (cDNA clone:J013056J23, full insert sequence) Q6Z1P2 Q6Z1P2_ORYSJ Os08g0566600 Os08g0566600 OsJ_28325 OSJNBa0044E16.27 OSNPB_080566600 ENOG411E4UV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Hypoxia-responsive protein / zinc finger (C3HC4-type RING finger) protein-like (Os09g0375900 protein) (cDNA clone:001-027-C03, full insert sequence) (cDNA clone:J023138J18, full insert sequence) Q6H5G3 Q6H5G3_ORYSJ Os09g0375900 OsJ_29155 OSNPB_090375900 P0711A01.13 ENOG411E4UW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E4UX GRXC10 Q29PZ1 GRC10_ARATH Glutaredoxin-C10 (AtGrxC10) (Protein ROXY 20) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 15709 Glutaredoxin-C10 (AtGrxC10) (Protein ROXY 20) cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2143004; AT5G11930 protein disulfide oxidoreductase activity NA NA NA NA NA NA NA ENOG411E4UY Q9M9C9 Q9M9C9_ARATH At1g68440/T2E12_1 (Transmembrane protein) (Uncharacterized protein T2E12.1) 33924 At1g68440/T2E12_1 (Transmembrane protein) (Uncharacterized protein T2E12.1) integral component of membrane [GO:0016021] locus:2202344; AT1G68440 NA NA NA NA NA NA NA NA ENOG411E4UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0105200 protein,Os02g0262300 protein,Os06g0248900 protein A0A0N7KQC0,A0A0N7KF20,A0A0P0WV75 A0A0N7KQC0_ORYSJ,A0A0N7KF20_ORYSJ,A0A0P0WV75_ORYSJ Os09g0105200 OSNPB_090105200,Os02g0262300 OSNPB_020262300,Os06g0248900 OSNPB_060248900 ENOG411E4U0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0824900 protein (cDNA clone:006-306-D05, full insert sequence) Q5QMB5 Q5QMB5_ORYSJ Os01g0824900 OsJ_03917 OSNPB_010824900 P0031D02.39 P0439E11.3 ENOG411E4U1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0035M09.14 protein (Os04g0606700 protein) (cDNA clone:J033145L05, full insert sequence) Q7XS50 Q7XS50_ORYSJ Os04g0606700 OSJNBa0035M09.14 OSNPB_040606700 ENOG411E4U2 ND4L Q04614 NU4LM_ARATH NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3) (NADH dehydrogenase subunit 4L) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:ATMG00650-MONOMER; 1.6.5.3 11135 NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3) (NADH dehydrogenase subunit 4L) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773] ATMG00650 NADH dehydrogenase subunit 4L NADH dehydrogenase subunit 4L Q8HCN5 Q8HCN5_ORYSJ nad4L ENOG411E4U3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0243600 protein Q8S2N4 Q8S2N4_ORYSJ Os01g0243600 Os01g0243600 B1008C01.8 B1066G12.31 OsJ_01076 OSNPB_010243600 ENOG411E4U4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0183700 protein A0A0P0XS93 A0A0P0XS93_ORYSJ Os10g0183700 OSNPB_100183700 ENOG411E4U5 ATL44 O22755 ATL44_ARATH Probable E3 ubiquitin-protein ligase ATL44 (EC 2.3.2.27) (RING-H2 finger A3a) (RING-H2 finger protein ATL44) (RING-H2 zinc finger protein RHA3a) (RING-type E3 ubiquitin transferase ATL44) FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9LY41}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 2.3.2.27 19937 Probable E3 ubiquitin-protein ligase ATL44 (EC 2.3.2.27) (RING-H2 finger A3a) (RING-H2 finger protein ATL44) (RING-H2 zinc finger protein RHA3a) (RING-type E3 ubiquitin transferase ATL44) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] TISSUE SPECIFICITY: Expressed in stems, flowers and green siliques. {ECO:0000269|PubMed:9781696}. locus:2053863; AT2G17450 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E4U6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E4U7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA emp24/gp25L/p24 family/GOLD Os03g0328300 protein A0A0P0VXR4 A0A0P0VXR4_ORYSJ Os03g0328300 OSNPB_030328300 ENOG411E4U8 KIC Q9ZPX9 KIC_ARATH Calcium-binding protein KIC (KCBP-interacting calcium-binding protein) FUNCTION: Calcium-binding regulatory protein that interacts with kinesin motor protein KCBP in a calcium-dependent manner. Inhibits KCBP microtubule binding activity and microtubule-stimulated ATPase activity. Involved in the regulation of trichome branching through its interaction with KCBP. {ECO:0000269|PubMed:14688294}. MISCELLANEOUS: Plants overexpressing KIC1 causes a reduction in the number of trichome branches. 15168 Calcium-binding protein KIC (KCBP-interacting calcium-binding protein) calcium ion binding [GO:0005509]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Expressed in stems, leaves and flowers. {ECO:0000269|PubMed:14688294}. locus:2039969; AT2G46600 calcium-binding protein Os02g0122600 protein (Putative EF-hand Ca2+-binding protein CCD1) Q6Z727 Q6Z727_ORYSJ Os02g0122600 Os02g0122600 OSNPB_020122600 P0575F10.4 ENOG411E4U9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0573300 protein Q9AYL6 Q9AYL6_ORYSJ Os10g0573300 OsJ_32554 OSJNBa0003O19.12 OSNPB_100573300 ENOG411E8CN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E42E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Expressed protein (Os03g0245300 protein) (cDNA clone:001-027-C05, full insert sequence) Q10P64 Q10P64_ORYSJ Os03g0245300 LOC_Os03g14140 Os03g0245300 OsJ_10118 OSNPB_030245300 ENOG411E42D Q9SLE0,A0A1P8B2W6,A0A1P8B2T4,B3H6H9 Q9SLE0_ARATH,A0A1P8B2W6_ARATH,A0A1P8B2T4_ARATH,B3H6H9_ARATH Gluconokinase (EC 2.7.1.12),P-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Phosphorylates gluconate to 6-phosphogluconate. {ECO:0000250|UniProtKB:Q5FQ97}. PATHWAY: Carbohydrate acid metabolism; D-gluconate degradation. {ECO:0000256|RuleBase:RU363066}. ARA:AT2G16790-MONOMER; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Pentose phosphate pathway (00030),Metabolic pathways (01100) 2.7.1.12 20969,19972,21505,20769 Gluconokinase (EC 2.7.1.12),P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; gluconokinase activity [GO:0046316]; hydrolase activity [GO:0016787]; D-gluconate catabolic process [GO:0046177],hydrolase activity [GO:0016787]; kinase activity [GO:0016301]; carbohydrate metabolic process [GO:0005975] locus:2059878; AT2G16790 Shikimate kinase Gluconokinase (EC 2.7.1.12) A0A0P0WRJ9 A0A0P0WRJ9_ORYSJ Os06g0114650 OSNPB_060114650 ENOG411E425 Q9FHK5,A0A1P8BB25,F4JZ84 Q9FHK5_ARATH,A0A1P8BB25_ARATH,F4JZ84_ARATH Gb|AAF19561.1 (Myosin heavy chain, striated protein),Myosin heavy chain, striated protein 49879,46566,47119 Gb|AAF19561.1 (Myosin heavy chain, striated protein),Myosin heavy chain, striated protein locus:2156794; AT5G05180 NA NA NA NA NA NA NA NA ENOG411E422 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os04g0443200 protein (cDNA clone:002-135-F08, full insert sequence) Q0JCY6 Q0JCY6_ORYSJ Os04g0443200 Os04g0443200 OSNPB_040443200 ENOG411ED7X AGAMOUS-like 105 Q9FG45,Q9M0P8,Q9SRZ2,Q9FG46,Q9C8D9,Q9FG41,Q9FG47,Q9FG42,Q9FKD4,A0A1P8BHB3,A0A1P8B9F4 Q9FG45_ARATH,Q9M0P8_ARATH,Q9SRZ2_ARATH,Q9FG46_ARATH,Q9C8D9_ARATH,Q9FG41_ARATH,Q9FG47_ARATH,Q9FG42_ARATH,Q9FKD4_ARATH,A0A1P8BHB3_ARATH,A0A1P8B9F4_ARATH Similarity to unknown protein,Uncharacterized protein AT4g09440,F12P19.17 protein,Uncharacterized protein F15E12.9,Uncharacterized protein 3.2.1.55; 70548,20408,35852,67470,35841,73283,72092,72266,71159,73093,73527 Similarity to unknown protein,Uncharacterized protein AT4g09440,F12P19.17 protein,Uncharacterized protein F15E12.9,Uncharacterized protein transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2182503;,locus:2133752;,locus:2013795;,locus:2182553;,locus:2013815;,locus:2182523;,locus:2182543;,locus:2182518;,locus:2153779; AT5G37430,AT4G09440,AT1G66000,AT5G37420,AT1G66060,AT5G37470,AT5G37410,AT5G37460,AT5G37920 Family of unknown function (DUF577) NA NA NA NA NA NA NA ENOG411E8M5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0495150 protein A0A0P0WBS9 A0A0P0WBS9_ORYSJ Os04g0495150 OSNPB_040495150 ENOG411E0D3 PME36 Q84R10 PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36 [Includes: Pectinesterase inhibitor 36 (Pectin methylesterase inhibitor 36); Pectinesterase 36 (PE 36) (EC 3.1.1.11) (Pectin methylesterase 36) (AtPME36)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G60730-MONOMER; 3.1.1.11 57877 Probable pectinesterase/pectinesterase inhibitor 36 [Includes: Pectinesterase inhibitor 36 (Pectin methylesterase inhibitor 36); Pectinesterase 36 (PE 36) (EC 3.1.1.11) (Pectin methylesterase 36) (AtPME36)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during early seed development and late developmental phases of siliques. {ECO:0000269|PubMed:16504176, ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2101836; AT3G60730 pectinesterase pectinesterase inhibitor NA NA NA NA NA NA NA ENOG411E0D1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YT521-B-like domain High-glucose-regulated protein 8-like (Os07g0170300 protein) Q69LD0 Q69LD0_ORYSJ Os07g0170300 Os07g0170300 OSJNBa0050F10.27 OSNPB_070170300 ENOG411E0D0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Os06g0105350 protein A0A0P0WRA8 A0A0P0WRA8_ORYSJ Os06g0105350 OSNPB_060105350 ENOG411E0D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family OSJNBa0043L24.8 protein (OSJNBb0002J11.17 protein) (Os04g0507400 protein),Os05g0289700 protein (Putative benzoyl coenzyme A: benzyl alcohol benzoyl transferase),Os05g0315700 protein,Os07g0550600 protein (Putative benzoyl coenzyme A: benzyl alcohol benzoyl transferase) (cDNA clone:002-124-C01, full insert sequence),Os02g0698200 protein,Os05g0155800 protein,Os01g0877700 protein Q7X880,Q75HS1,Q5WMS2,Q7EZ34,A0A0P0VNI2,A0A0P0WIJ8,A0A0N7KE61 Q7X880_ORYSJ,Q75HS1_ORYSJ,Q5WMS2_ORYSJ,Q7EZ34_ORYSJ,A0A0P0VNI2_ORYSJ,A0A0P0WIJ8_ORYSJ,A0A0N7KE61_ORYSJ Os04g0507400 OSJNBa0043L24.8 OSJNBb0002J11.17 OSNPB_040507400,Os05g0289700 P0587F01.17 OSNPB_050289700 P0628H02.3,Os05g0315700 OJ1333_C12.9 OSNPB_050315700,OSJNBb0041B22.105 P0534A03.139 Os07g0550600 OsJ_24673 OSNPB_070550600,Os02g0698200 OSNPB_020698200,Os05g0155800 OSNPB_050155800,Os01g0877700 OSNPB_010877700 ENOG411E0D6 A0A1P8ATP2,Q9FZ82,A0A1P8ATP8,A0A1P8ATR4,A0A1P8ATP7,F4HTV1 A0A1P8ATP2_ARATH,Q9FZ82_ARATH,A0A1P8ATP8_ARATH,A0A1P8ATR4_ARATH,A0A1P8ATP7_ARATH,F4HTV1_ARATH Galactose oxidase/kelch repeat superfamily protein,F25I16.5 protein (Galactose oxidase/kelch repeat superfamily protein) 43961,60858,62451,62580,61088,62808 Galactose oxidase/kelch repeat superfamily protein,F25I16.5 protein (Galactose oxidase/kelch repeat superfamily protein) locus:2027443;,locus:2037323; AT1G18610,AT1G74150 CONTAINS InterPro DOMAIN s Galactose oxidase kelch beta-propeller (InterPro IPR011043) Kelch repeat type 1 (InterPro IPR006652) Kelch repeat type 2 (InterPro IPR011498) Kelch-type beta propeller (InterPro IPR015915) NA NA NA NA NA NA NA ENOG411E0D5 Q9SR18 Q9SR18_ARATH F7O18.3 protein (Nucleolar/coiled-body phosphoprotein) (Uncharacterized protein At3g04560) 45879 F7O18.3 protein (Nucleolar/coiled-body phosphoprotein) (Uncharacterized protein At3g04560) locus:2084928; AT3G04560 NA Os02g0820600 protein (cDNA clone:J013070F02, full insert sequence) Q6K712 Q6K712_ORYSJ Os02g0820600 OsJ_08904 OSNPB_020820600 P0474F11.15 ENOG411E0D4 PCMP-H16 Q9LZ19 PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780, mitochondrial 71725 Pentatricopeptide repeat-containing protein At5g04780, mitochondrial chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2175498; AT5G04780 Pentatricopeptide repeat-containing protein Os12g0156900 protein (SEC14 cytosolic factor, putative) Q2QXH1 Q2QXH1_ORYSJ Os12g0156900 LOC_Os12g06070 OsJ_35285 OSNPB_120156900 ENOG411E0D9 ACR6 Q9SGA0,A0A1I9LSD7,A0A1I9LSD2,A0A1I9LSD9,A0A1I9LSD1,A0A1I9LSD8,A0A1I9LSD3,A0A1I9LSD4,A0A1I9LSD6 ACR6_ARATH,A0A1I9LSD7_ARATH,A0A1I9LSD2_ARATH,A0A1I9LSD9_ARATH,A0A1I9LSD1_ARATH,A0A1I9LSD8_ARATH,A0A1I9LSD3_ARATH,A0A1I9LSD4_ARATH,A0A1I9LSD6_ARATH ACT domain-containing protein ACR6 (Protein ACT DOMAIN REPEATS 6),ACT domain repeat 6 FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 48742,50343,34319,48553,37943,39544,35920,38609,50154 ACT domain-containing protein ACR6 (Protein ACT DOMAIN REPEATS 6),ACT domain repeat 6 amino acid binding [GO:0016597] locus:2078678; AT3G01990 ACT domain ACT-domain repeat protein 8 (Os08g0533600 protein) (Putative ACT domain-containing protein) (cDNA clone:001-038-C04, full insert sequence) (cDNA clone:001-208-A12, full insert sequence),ACT-domain repeat protein 6 (OSJNBa0055C08.5 protein) (Os04g0391500 protein) (cDNA clone:J013102O07, full insert sequence),Os04g0391500 protein Q6YZC7,Q7XVN5,A0A0P0W9M0 Q6YZC7_ORYSJ,Q7XVN5_ORYSJ,A0A0P0W9M0_ORYSJ OsACR8 Os08g0533600 OSNPB_080533600 P0702C09.1 P0702E04.39,OsACR6 Os04g0391500 OSJNBa0055C08.5 OSNPB_040391500,Os04g0391500 OSNPB_040391500 ENOG411E0D8 BXL6 Q9LXA8 BXL6_ARATH Probable beta-D-xylosidase 6 (AtBXL6) (EC 3.2.1.-) ARA:AT5G10560-MONOMER; 3.2.1.- 87185 Probable beta-D-xylosidase 6 (AtBXL6) (EC 3.2.1.-) proteinaceous extracellular matrix [GO:0005578]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; xylan 1,4-beta-xylosidase activity [GO:0009044]; carbohydrate metabolic process [GO:0005975] locus:2142434; AT5G10560 glycosyl hydrolase family 3 protein OSJNBa0074L08.23 protein (OSJNBa0081C01.11 protein) (Os04g0530700 protein) Q7X7M4 Q7X7M4_ORYSJ Os04g0530700 OSJNBa0074L08.23 OSJNBa0081C01.11 OSNPB_040530700 ENOG411E0DR GRF9 Q96299,F4IP55,F4IP53 14339_ARATH,F4IP55_ARATH,F4IP53_ARATH 14-3-3-like protein GF14 mu (General regulatory factor 9),General regulatory factor 9 FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. R-ATH-1445148;R-ATH-3371453;R-ATH-3371511; 29520,30969,29463 14-3-3-like protein GF14 mu (General regulatory factor 9),General regulatory factor 9 cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein domain specific binding [GO:0019904],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; protein domain specific binding [GO:0019904]; post-embryonic root development [GO:0048528],protein domain specific binding [GO:0019904] locus:2041544; AT2G42590 14-3-3-like protein NA NA NA NA NA NA NA ENOG411E0DP SRFR1 F4JS25,A0A1P8B8I2 SRFR1_ARATH,A0A1P8B8I2_ARATH Suppressor of RPS4-RLD 1 (Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 5) (AtSNC5),Tetratricopeptide repeat (TPR)-like superfamily protein DISRUPTION PHENOTYPE: Severe stunting in cv. Columbia. {ECO:0000269|PubMed:21079790}. FUNCTION: Negative regulator of effector-triggered immunity associated with the EDS1 resistance pathway (PubMed:15469494, PubMed:18774967, PubMed:19649196, PubMed:19525323, PubMed:20862316, PubMed:21079790). May localize its interactors to a microsomal membrane (PubMed:22158819). May therefore negatively regulate RPS4 and SNC1 translocation to the nucleus (PubMed:21079790). Contributes to the regulation of RPS2 and RPS4 protein levels and negatively regulates SNC1 stability (PubMed:20862316). {ECO:0000269|PubMed:15469494, ECO:0000269|PubMed:18774967, ECO:0000269|PubMed:19525323, ECO:0000269|PubMed:19649196, ECO:0000269|PubMed:20862316, ECO:0000269|PubMed:21079790, ECO:0000269|PubMed:22158819}. 118107,100472 Suppressor of RPS4-RLD 1 (Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 5) (AtSNC5),Tetratricopeptide repeat (TPR)-like superfamily protein cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; protein complex scaffold activity [GO:0032947]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; negative regulation of defense response [GO:0031348]; negative regulation of transcription, DNA-templated [GO:0045892] TISSUE SPECIFICITY: Ubiquitous. Not detected in very young flowers and older siliques. {ECO:0000269|PubMed:18774967}. locus:2126347; AT4G37460 Tetratricopeptide repeat protein Os07g0113700 protein (Tetratricopeptide repeat(TPR)-containing protein-like) Q7XHN9 Q7XHN9_ORYSJ OJ1513_F02.124 OJ1118_G09.131 Os07g0113700 OSNPB_070113700 ENOG411E0DV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-norcoclaurine synthase 1-like NA NA NA NA NA NA NA ENOG411E0DU NUDT8 Q8L7W2,A0A1P8BEI5 NUDT8_ARATH,A0A1P8BEI5_ARATH Nudix hydrolase 8 (AtNUDT8) (EC 3.6.1.-),Nudix hydrolase homolog 8 DISRUPTION PHENOTYPE: Small and stunted plant phenotype when grown on 12/12 hour photoperiod light. No visible phenotype when grown under short or long day light (8/16 hours or 16/8 hours of light/dark). {ECO:0000269|PubMed:25436909}. FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives (By similarity). May be involved in plant immunity and act as a positive regulator of defense response through salicylic acid (SA) signaling (PubMed:25436909). {ECO:0000250, ECO:0000269|PubMed:25436909}. ARA:AT5G47240-MONOMER; 3.6.1.- 41314,44778 Nudix hydrolase 8 (AtNUDT8) (EC 3.6.1.-),Nudix hydrolase homolog 8 hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; response to wounding [GO:0009611],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, stems and, at lower level, leaves. {ECO:0000269|PubMed:15878881}. locus:2171544; AT5G47240 Nudix hydrolase Os04g0547900 protein (cDNA clone:001-010-C09, full insert sequence) (cDNA clone:J013047F16, full insert sequence) Q0JB97 Q0JB97_ORYSJ Os04g0547900 Os04g0547900 OsJ_15676 OSNPB_040547900 ENOG411E0DC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os12g0605400 protein (Ubiquitin-conjugating enzyme spm2, putative, expressed) (cDNA clone:J013130B07, full insert sequence) Q2QMG7 Q2QMG7_ORYSJ LOC_Os12g41220 Os12g0605400 OsJ_36792 OSNPB_120605400 ENOG411E0DA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os02g0694100 protein Q6Z891 Q6Z891_ORYSJ Os02g0694100 Os02g0694100 OSNPB_020694100 P0017H11.21 ENOG411E0DG PTAC13 Q94AA3 Q94AA3_ARATH AT3g09210/F3L24_8 (Plastid transcriptionally active 13) 37491 AT3g09210/F3L24_8 (Plastid transcriptionally active 13) nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; regulation of transcription, DNA-templated [GO:0006355] locus:2083584; AT3G09210 Transcription termination factor nusG family protein KOW motif family protein, expressed (Os03g0825500 protein) (Putative transcription factor) Q10BA7 Q10BA7_ORYSJ OJ1111_B11.18 LOC_Os03g61030 Os03g0825500 OSNPB_030825500 ENOG411E0DE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0394900 protein (cDNA clone:001-020-B07, full insert sequence) Q6AU73 Q6AU73_ORYSJ Os05g0394900 OSJNBa0014C03.10 OSNPB_050394900 ENOG411E0DK Q8H0Z2,Q8VYC6,Q9FRK9,A0A1P8AR26,A0A1P8ASB8 Q8H0Z2_ARATH,Q8VYC6_ARATH,Q9FRK9_ARATH,A0A1P8AR26_ARATH,A0A1P8ASB8_ARATH Erythronate-4-phosphate dehydrogenase family protein (Uncharacterized protein At1g75180),Erythronate-4-phosphate dehydrogenase family protein (Uncharacterized protein At1g19400),AT1G75180 protein (Erythronate-4-phosphate dehydrogenase family protein) (Uncharacterized protein At1g75180) (Uncharacterized protein F22H5.9),Erythronate-4-phosphate dehydrogenase family protein 27282,33954,35379,27168,30491 Erythronate-4-phosphate dehydrogenase family protein (Uncharacterized protein At1g75180),Erythronate-4-phosphate dehydrogenase family protein (Uncharacterized protein At1g19400),AT1G75180 protein (Erythronate-4-phosphate dehydrogenase family protein) (Uncharacterized protein At1g75180) (Uncharacterized protein F22H5.9),Erythronate-4-phosphate dehydrogenase family protein integral component of membrane [GO:0016021] locus:2016382;,locus:2025187; AT1G75180,AT1G19400 NA Dehydrogenase, putative, expressed (Os03g0775600 protein) (cDNA clone:002-102-B02, full insert sequence),Dehydrogenase, putative, expressed (Os03g0775600 protein) (cDNA clone:J013074F23, full insert sequence) Q10DL7,Q10DL9 Q10DL7_ORYSJ,Q10DL9_ORYSJ Os03g0775600 LOC_Os03g56420 OSNPB_030775600,LOC_Os03g56420 Os03g0775600 OsJ_12775 OSNPB_030775600 ENOG411E0DJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RFC-E_C Os02g0704966 protein A0A0P0VNR0 A0A0P0VNR0_ORYSJ Os02g0704966 OSNPB_020704966 ENOG411E0DH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0498000 protein (Tyrosine specific protein phosphatase-like) Q654I3 Q654I3_ORYSJ Os06g0498000 OsJ_21444 OSNPB_060498000 P0036C11.28 ENOG411E0DM Q9FGF3 Q9FGF3_ARATH At5g64430 (Octicosapeptide/Phox/Bem1p family protein) (Similarity to unknown protein) (Uncharacterized protein At5g64430) (Uncharacterized protein At5g64430; T12B11.2) 56441 At5g64430 (Octicosapeptide/Phox/Bem1p family protein) (Similarity to unknown protein) (Uncharacterized protein At5g64430) (Uncharacterized protein At5g64430; T12B11.2) chloroplast envelope [GO:0009941] locus:2179366; AT5G64430 PB1 Os02g0809100 protein (Fragment) A0A0P0VRC8 A0A0P0VRC8_ORYSJ Os02g0809100 OSNPB_020809100 ENOG411DU4Z NPF2.3,NPF2.5,NPF2.2,NPF2.1,NPF2.7,NPF2.4,NPF2.6,NAXT1 Q9M175,Q9M172,Q9M174,Q9M171,Q9M1E2,Q9M173,Q9M1E1,A0A1I9LN67,A0A1I9LSG9 PTR39_ARATH,PTR42_ARATH,PTR40_ARATH,PTR43_ARATH,PTR37_ARATH,PTR41_ARATH,PTR38_ARATH,A0A1I9LN67_ARATH,A0A1I9LSG9_ARATH Protein NRT1/ PTR FAMILY 2.3 (AtNPF2.3) (Probable nitrate excretion transporter 3) (Protein NAXT1-like 2),Protein NRT1/ PTR FAMILY 2.5 (AtNPF2.5) (Probable nitrate excretion transporter 6) (Protein NAXT1-like 5),Putative protein NRT1/ PTR FAMILY 2.2 (AtNPF2.2) (Protein NAXT1-like 3) (Putative nitrate excretion transporter 4),Protein NRT1/ PTR FAMILY 2.1 (AtNPF2.1) (Protein NAXT1-like 6) (Putative nitrate excretion transporter 7),Protein NRT1/ PTR FAMILY 2.7 (AtNPF2.7) (Nitrate excretion transporter 1),Protein NRT1/ PTR FAMILY 2.4 (AtNPF2.4) (Probable nitrate excretion transporter 5) (Protein NAXT1-like 4),Protein NRT1/ PTR FAMILY 2.6 (AtNPF2.6) (Probable nitrate excretion transporter 2) (Protein NAXT1-like 1),Major facilitator superfamily protein,Nitrate excretion transporter1 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17993627}. FUNCTION: Transporter involved in a passive nitrate efflux. {ECO:0000250}.,FUNCTION: Transporter involved in a passive nitrate efflux. Not competent for chloride transport. {ECO:0000269|PubMed:17993627}. R-ATH-427975;R-ATH-6798695; 3.6.3.26; 61250,61643,57111,61103,61099,60828,61485,64070,64074 Protein NRT1/ PTR FAMILY 2.3 (AtNPF2.3) (Probable nitrate excretion transporter 3) (Protein NAXT1-like 2),Protein NRT1/ PTR FAMILY 2.5 (AtNPF2.5) (Probable nitrate excretion transporter 6) (Protein NAXT1-like 5),Putative protein NRT1/ PTR FAMILY 2.2 (AtNPF2.2) (Protein NAXT1-like 3) (Putative nitrate excretion transporter 4),Protein NRT1/ PTR FAMILY 2.1 (AtNPF2.1) (Protein NAXT1-like 6) (Putative nitrate excretion transporter 7),Protein NRT1/ PTR FAMILY 2.7 (AtNPF2.7) (Nitrate excretion transporter 1),Protein NRT1/ PTR FAMILY 2.4 (AtNPF2.4) (Probable nitrate excretion transporter 5) (Protein NAXT1-like 4),Protein NRT1/ PTR FAMILY 2.6 (AtNPF2.6) (Probable nitrate excretion transporter 2) (Protein NAXT1-like 1),Major facilitator superfamily protein,Nitrate excretion transporter1 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to salt stress [GO:0071472]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706]; oligopeptide transport [GO:0006857]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; chloride transmembrane transporter activity [GO:0015108]; cellular response to salt [GO:1902075]; chloride transport [GO:0006821]; nitrate assimilation [GO:0042128]; oligopeptide transport [GO:0006857],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; nitrate assimilation [GO:0042128]; oligopeptide transport [GO:0006857],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; nitrate assimilation [GO:0042128],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate efflux transmembrane transporter activity [GO:0010542]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706]; response to acidic pH [GO:0010447],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; chloride transmembrane transporter activity [GO:0015108]; chloride transmembrane transport [GO:1902476]; nitrate assimilation [GO:0042128]; oligopeptide transport [GO:0006857],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in flowers, siliques and root epidermis or cortex. Detected in shoots. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:17993627}.,TISSUE SPECIFICITY: Expressed in the root epidermis or cortex. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:17993627}.,TISSUE SPECIFICITY: Not detected. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in shoots and in the cortex of mature roots. Not expressed in root tip meristematic cells. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:17993627}.,TISSUE SPECIFICITY: Strongly expressed in the root stele. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:17993627}. locus:2102659;,locus:2102689;,locus:2102669;,locus:2102694;,locus:2085647;,locus:2102679;,locus:2085662; AT3G45680,AT3G45710,AT3G45690,AT3G45720,AT3G45650,AT3G45700,AT3G45660 transporter Os01g0960900 protein,Os05g0338933 protein A0A0P0VD41,A0A0P0WL68 A0A0P0VD41_ORYSJ,A0A0P0WL68_ORYSJ Os01g0960900 OSNPB_010960900,Os05g0338933 OSNPB_050338933 ENOG411E6E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain Os11g0472600 protein A0A0P0Y2E3 A0A0P0Y2E3_ORYSJ Os11g0472600 OSNPB_110472600 ENOG411EK7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF629) Os06g0681100 protein A0A0P0WZY1 A0A0P0WZY1_ORYSJ Os06g0681100 OSNPB_060681100 ENOG411EK7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxin thioredoxin reductase variable alpha chain NA NA NA NA NA NA NA ENOG411EK7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EK7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWI NA NA NA NA NA NA NA ENOG411EK7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA NA NA NA NA NA NA NA ENOG411EK7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411EK7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0V5 Q6IDA8,A0A1P8B0L9 Q6IDA8_ARATH,A0A1P8B0L9_ARATH At2g14110 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 21749,17250 At2g14110 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein phosphatase activity [GO:0016791] locus:2059440; AT2G14110 Magnesium-dependent phosphatase HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed (Os11g0434000 protein) (cDNA clone:002-183-C07, full insert sequence) (cDNA clone:J033068D13, full insert sequence),Magnesium-dependent phosphatase-1 family protein, expressed (Os03g0737300 protein) (cDNA clone:J023081E04, full insert sequence),Magnesium-dependent phosphatase-1 family protein, expressed (Os03g0737400 protein) (cDNA clone:001-120-D02, full insert sequence) Q2R5L0,Q84R48,Q84R45 Q2R5L0_ORYSJ,Q84R48_ORYSJ,Q84R45_ORYSJ Os11g0434000 LOC_Os11g24630 Os11g0434000 OSNPB_110434000,OSJNBb0016H12.22 LOC_Os03g52720 Os03g0737300 OsJ_12492 OSNPB_030737300,OSJNBb0016H12.23 LOC_Os03g52730 Os03g0737400 OSNPB_030737400 ENOG411E0V4 Q9SGW5 Q9SGW5_ARATH F1N19.7 (Glutaredoxin family protein) (Putative peptide transporter protein) 41016 F1N19.7 (Glutaredoxin family protein) (Putative peptide transporter protein) actin filament [GO:0005884]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; actin filament bundle assembly [GO:0051017]; cell redox homeostasis [GO:0045454]; chloroplast relocation [GO:0009902] locus:2019479; AT1G64500 Glutaredoxin Os01g0235900 protein (Peptide transporter protein-like),Os04g0592901 protein,Os06g0667800 protein Q9LI27,A0A0P0WE56,A0A0P0X051 Q9LI27_ORYSJ,A0A0P0WE56_ORYSJ,A0A0P0X051_ORYSJ Os01g0235900 Os01g0235900 OSNPB_010235900 P0708G02.17,Os04g0592901 OSNPB_040592901,Os06g0667800 OSNPB_060667800 ENOG411E0V6 F4HRV0 F4HRV0_ARATH Ran BP2/NZF zinc finger-like superfamily protein 31105 Ran BP2/NZF zinc finger-like superfamily protein AT1G67325 ranBP2-type zinc finger protein Os08g0521400 protein (cDNA clone:J023041G22, full insert sequence) (p53 binding protein-like),Os08g0521400 protein (cDNA clone:001-038-H09, full insert sequence) (p53 binding protein-like),Os08g0521400 protein (p53 binding protein-like) Q7F1K3,Q7F1K5,Q7F1K4 Q7F1K3_ORYSJ,Q7F1K5_ORYSJ,Q7F1K4_ORYSJ OJ1081_B12.106-3 OJ1003_A09.35-3 Os08g0521400 OSNPB_080521400,OJ1081_B12.106-2 OJ1003_A09.35-2 Os08g0521400 OSNPB_080521400,OJ1081_B12.106-1 OJ1003_A09.35-1 Os08g0521400 OSNPB_080521400 ENOG411E0VU SCPL17,SCPL19,SCPL52,SCPL15,SCPL14,SCPL18,scpl17,scpl18,scpl16 Q9C7D6,Q8VZU3,Q8S8P0,Q9C7D2,Q9C7D3,Q9C7Z9,A0A1I9LS91,A0A1I9LS92,A0A1P8ASK8,A0A1I9LRY3,A0A1I9LRY2 SCP17_ARATH,SCP19_ARATH,SCP52_ARATH,SCP15_ARATH,SCP14_ARATH,SCP18_ARATH,A0A1I9LS91_ARATH,A0A1I9LS92_ARATH,A0A1P8ASK8_ARATH,A0A1I9LRY3_ARATH,A0A1I9LRY2_ARATH Serine carboxypeptidase-like 17 (EC 3.4.16.-),Serine carboxypeptidase-like 19 (Protein SINAPOYLGLUCOSE ACCUMULATOR 2) (Sinapoylglucose--choline O-sinapoyltransferase) (SCT) (EC 2.3.1.91) [Cleaved into: Serine carboxypeptidase-like 19 chain A; Serine carboxypeptidase-like 19 chain B],Putative serine carboxypeptidase-like 52,Serine carboxypeptidase-like 15 (EC 3.4.16.-),Serine carboxypeptidase-like 14 (EC 3.4.16.-),Serine carboxypeptidase-like 18 (EC 3.4.16.-),Serine carboxypeptidase-like 17,Serine carboxypeptidase-like 18,Serine carboxypeptidase-like 16 DISRUPTION PHENOTYPE: Plants accumulate sinapoylglucose and contain low levels of sinapoylcholine and increased levels of choline. Decreased levels of both benzoylated and sinapoylated glucosinolates. {ECO:0000269|PubMed:11696189, ECO:0000269|PubMed:18515127, ECO:0000269|PubMed:22762247}. Elevated sinapoylglucose levels; Low sinapoylcholine levels-C. Chapple-2001 FUNCTION: Probable carboxypeptidase. {ECO:0000250}.,FUNCTION: Involved in plants secondary metabolism. Functions as acyltransferase to form the sinapate ester sinapoylcholine also known as sinapine. Able to convert in vitro benzoylglucose into benzoylcholine. {ECO:0000269|PubMed:11696189, ECO:0000269|PubMed:12657648, ECO:0000269|PubMed:17094968, ECO:0000269|PubMed:17600138, ECO:0000269|PubMed:18515127, ECO:0000269|PubMed:22762247}. ARA:AT3G12203-MONOMER;,ARA:AT5G09640-MONOMER;,ARA:AT2G22960-MONOMER;,ARA:AT3G12240-MONOMER;,ARA:AT3G12230-MONOMER;,ARA:AT1G33540-MONOMER; R-ATH-6798695; 2.3.1.91; 3.4.16.-,2.3.1.91 49505,52579,21246,49350,49020,52300,42961,46942,47530,45912,43400 Serine carboxypeptidase-like 17 (EC 3.4.16.-),Serine carboxypeptidase-like 19 (Protein SINAPOYLGLUCOSE ACCUMULATOR 2) (Sinapoylglucose--choline O-sinapoyltransferase) (SCT) (EC 2.3.1.91) [Cleaved into: Serine carboxypeptidase-like 19 chain A; Serine carboxypeptidase-like 19 chain B],Putative serine carboxypeptidase-like 52,Serine carboxypeptidase-like 15 (EC 3.4.16.-),Serine carboxypeptidase-like 14 (EC 3.4.16.-),Serine carboxypeptidase-like 18 (EC 3.4.16.-),Serine carboxypeptidase-like 17,Serine carboxypeptidase-like 18,Serine carboxypeptidase-like 16 extracellular region [GO:0005576]; carboxypeptidase activity [GO:0004180]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; secondary metabolic process [GO:0019748],extracellular region [GO:0005576]; sinapoylglucose-choline O-sinapoyltransferase activity [GO:0047202]; sinapoyltransferase activity [GO:0016752]; proteolysis [GO:0006508]; secondary metabolic process [GO:0019748],extracellular region [GO:0005576]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; cellular response to UV-B [GO:0071493]; flavonol biosynthetic process [GO:0051555]; proteolysis [GO:0006508]; secondary metabolic process [GO:0019748],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expressed in seedlings and siliques. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in roots and flowers, and at lower levels in young leaves and seedlings. Expressed in mature seeds and detected in expanding siliques. {ECO:0000269|PubMed:11696189, ECO:0000269|PubMed:15908604, ECO:0000269|PubMed:18515127}.,TISSUE SPECIFICITY: Expressed in seedlings and roots. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in senescent leaves. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:15908604}. locus:2082249;,locus:2144751;,locus:2045324;,locus:2082219;,locus:2082229; AT3G12203,AT5G09640,AT2G22960,AT3G12240,AT3G12230,AT1G33540 serine carboxypeptidase-like Os03g0730500 protein (Serine carboxypeptidase family protein, expressed) (cDNA clone:J013070H07, full insert sequence),Os10g0101100 protein (Serine carboxypeptidase family protein, expressed),OSJNBb0051N19.2 protein (Os04g0176400 protein),Os02g0687900 protein (Putative serine carboxypeptidase) (cDNA clone:J013000E09, full insert sequence),Os03g0730400 protein (Serine carboxypeptidase family protein, expressed) (cDNA clone:J013128F10, full insert sequence),Carboxypeptidase (EC 3.4.16.-),Os11g0430000 protein,Os11g0432900 protein (Fragment),Os03g0730400 protein,Os03g0730700 protein,Os12g0581400 protein,Os06g0519700 protein,Os11g0643400 protein Q10DG0,Q33BK5,Q7XSG1,Q6ZH05,Q10DG3,Q2R5M2,A0A0P0Y234,A0A0P0Y1P1,A0A0P0W381,A0A0P0W2K4,A0A0P0YBR5,A0A0N7KM71,A0A0N7KT99 Q10DG0_ORYSJ,Q33BK5_ORYSJ,Q7XSG1_ORYSJ,Q6ZH05_ORYSJ,Q10DG3_ORYSJ,Q2R5M2_ORYSJ,A0A0P0Y234_ORYSJ,A0A0P0Y1P1_ORYSJ,A0A0P0W381_ORYSJ,A0A0P0W2K4_ORYSJ,A0A0P0YBR5_ORYSJ,A0A0N7KM71_ORYSJ,A0A0N7KT99_ORYSJ Os03g0730500 LOC_Os03g52070 Os03g0730500 OSNPB_030730500,Os10g0101100 LOC_Os10g01110 Os10g0101100 OSNPB_100101100,Os04g0176400 Os04g0176400 OSJNBb0051N19.2 OSNPB_040176400,Os02g0687900 Os02g0687900 OJ1743_B12.5 OSNPB_020687900,Os03g0730400 LOC_Os03g52040 OSNPB_030730400,LOC_Os11g24510 Os11g0432900 OSNPB_110432900,Os11g0430000 OSNPB_110430000,Os11g0432900 OSNPB_110432900,Os03g0730400 OSNPB_030730400,Os03g0730700 OSNPB_030730700,Os12g0581400 OSNPB_120581400,Os06g0519700 OSNPB_060519700,Os11g0643400 OSNPB_110643400 ENOG411E0VT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0913400 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os01g0913400 protein (Fragment) Q5N7W0,A0A0P0VBY0 Q5N7W0_ORYSJ,A0A0P0VBY0_ORYSJ P0470A12.44-1 Os01g0913400 OSNPB_010913400,Os01g0913400 OSNPB_010913400 ENOG411E0VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411EIVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0138600 protein,Os11g0142101 protein Q0IQ82,A0A0P0XZ62 Q0IQ82_ORYSJ,A0A0P0XZ62_ORYSJ Os12g0138600 Os12g0138600 OSNPB_120138600,Os11g0142101 OSNPB_110142101 ENOG411EIVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIVQ Q9C9N4 Q9C9N4_ARATH Glycine-rich protein (Uncharacterized protein At1g66820) (Uncharacterized protein F4N21_5) 11049 Glycine-rich protein (Uncharacterized protein At1g66820) (Uncharacterized protein F4N21_5) locus:2033364; AT1G66820 glycine-rich protein NA NA NA NA NA NA NA ENOG411EIVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Jumonji domain containing 7 NA NA NA NA NA NA NA ENOG411EIVV Q1PFM9 Q1PFM9_ARATH At1g47280 8470 At1g47280 locus:2203781; AT1G47280 NA NA NA NA NA NA NA NA ENOG411EIVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411EIVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411EK72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411E7R2 psbF P62095 PSBF_ARATH Cytochrome b559 subunit beta (PSII reaction center subunit VI) FUNCTION: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00643}. 4424 Cytochrome b559 subunit beta (PSII reaction center subunit VI) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; photosynthetic electron transport chain [GO:0009767] locus:504954680; ATCG00570 This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity) Cytochrome b559 subunit beta (PSII reaction center subunit VI) P0C401,Q6Z1V5 PSBF_ORYSJ,Q6Z1V5_ORYSJ psbF LOC_Osp1g00510 Nip078,psbF Os03g0659266 B1065E10.7 OSJNBa0022A24.43 OSNPB_030659266 P0018C10.66 P0417D05.61 P0642B07.29 FUNCTION: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00643}.,FUNCTION: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000256|HAMAP-Rule:MF_00643, ECO:0000256|RuleBase:RU004529}. ENOG411E7R3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411E7R0 SMP1 Q9LE44 Q9LE44_ARATH At3g12960 (Seed maturation protein) 9464 At3g12960 (Seed maturation protein) locus:2089265; AT3G12960 seed maturation protein NA NA NA NA NA NA NA ENOG411E7R6 Q9LPK9 Q9LPK9_ARATH F24J8.11 protein (Uncharacterized protein unannotated coding sequence from BAC F24J8) 13259 F24J8.11 protein (Uncharacterized protein unannotated coding sequence from BAC F24J8) chloroplast thylakoid [GO:0009534] locus:2026962; AT1G21500 NA NA NA NA NA NA NA NA ENOG411E7R7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family NA NA NA NA NA NA NA ENOG411E7R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0608000 protein Q69V63 Q69V63_ORYSJ P0556B08.11-1 Os06g0608000 OSNPB_060608000 ENOG411E8CE VQ10 Q8VYI5 VQ10_ARATH VQ motif-containing protein 10 (AtVQ10) (Tobacco rattle virus-induced protein variant 1) FUNCTION: May modulate WRKY transcription factor activities. {ECO:0000250|UniProtKB:Q9M9F0}. 11875 VQ motif-containing protein 10 (AtVQ10) (Tobacco rattle virus-induced protein variant 1) nucleus [GO:0005634]; response to oxidative stress [GO:0006979] locus:2032050; AT1G78410 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411E7RB Q8L9P2,A0A1I9LSN0,A0A1I9LSN1 Q8L9P2_ARATH,A0A1I9LSN0_ARATH,A0A1I9LSN1_ARATH At3g60480 (StAR lipid transfer-like protein) (Uncharacterized protein At3g60480),StAR lipid transfer-like protein 11733,9055,12933 At3g60480 (StAR lipid transfer-like protein) (Uncharacterized protein At3g60480),StAR lipid transfer-like protein integral component of membrane [GO:0016021] locus:2103286; AT3G60480 NA NA NA NA NA NA NA NA ENOG411E7RA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Succinate dehydrogenase subunit 8A, mitochondrial,Succinate dehydrogenase subunit 8B, mitochondrial Q0DF13,Q5VS45 SDH8A_ORYSJ,SDH8B_ORYSJ SDH8A Os06g0124900 LOC_Os06g03486 OsJ_19947,SDH8B Os06g0125132 LOC_Os06g03514 P0425F02.23 ENOG411E7RG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative tRNA binding domain NA NA NA NA NA NA NA ENOG411E7RJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0729500 protein (cDNA clone:002-103-A10, full insert sequence) Q0JJM9 Q0JJM9_ORYSJ Os01g0729500 Os01g0729500 OSNPB_010729500 ENOG411E7RH Q1PF57,Q5BPT6,F4IME9 Q1PF57_ARATH,Q5BPT6_ARATH,F4IME9_ARATH Uncharacterized protein 29638,29635,9083 Uncharacterized protein locus:2827681;,locus:2827661;,locus:5019474720; AT2G17080,AT2G17070,AT2G17043 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E7RI Q9M9C8 Q9M9C8_ARATH At1g68430 (Uncharacterized protein T2E12.2) 16383 At1g68430 (Uncharacterized protein T2E12.2) locus:2202349; AT1G68430 NA NA NA NA NA NA NA NA ENOG411E7RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0266400 protein (cDNA clone:J023085H22, full insert sequence) Q5NBG6 Q5NBG6_ORYSJ Os01g0266400 Os01g0266400 OsJ_01219 OSNPB_010266400 P0011D01.3 P0499C11.31 ENOG411E7RU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0204400 protein,Os03g0806800 protein (cDNA clone:001-034-B07, full insert sequence) (cDNA clone:J013059N15, full insert sequence) Q7XB63,Q84M60 Q7XB63_ORYSJ,Q84M60_ORYSJ Os07g0204400 Os07g0204400 OSNPB_070204400 P0431A02.27,LOC_Os03g59210 Os03g0806800 OsJ_13032 OSJNBa0059E14.18 OSNPB_030806800 ENOG411E5YP CP12-3 Q9C9K2 CP123_ARATH Calvin cycle protein CP12-3, chloroplastic (CP12 domain-containing protein 3) (Chloroplast protein 12-3) FUNCTION: Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues. {ECO:0000269|PubMed:20399532}. MISCELLANEOUS: Binds copper and nickel ions. Copper ions catalyze the oxidation of reduced thiol groups and thus promote formation of the disulfide bonds required for linker activity (By similarity). {ECO:0000250}. 15449 Calvin cycle protein CP12-3, chloroplastic (CP12 domain-containing protein 3) (Chloroplast protein 12-3) chloroplast [GO:0009507]; protein complex [GO:0043234]; copper ion binding [GO:0005507]; nickel cation binding [GO:0016151]; cellular response to anoxia [GO:0071454]; cellular response to heat [GO:0034605]; negative regulation of reductive pentose-phosphate cycle [GO:0080153]; reductive pentose-phosphate cycle [GO:0019253] DEVELOPMENTAL STAGE: In flowers, restricted to the stigma and anthers. {ECO:0000269|PubMed:18974062}. TISSUE SPECIFICITY: Mostly expressed, at low levels, in stems and, to a lesser extent, in leaves and roots. {ECO:0000269|PubMed:18974062}. locus:2011676; AT1G76560 CP12 domain Os08g0513100 protein (Fragment) A0A0P0XHS0 A0A0P0XHS0_ORYSJ Os08g0513100 OSNPB_080513100 ENOG411E5YS Q8GW13,F4IFF0 Q8GW13_ARATH,F4IFF0_ARATH At2g14045 (Putative c-myc binding protein) (c-Myc-binding protein),c-Myc-binding protein 14035,10657 At2g14045 (Putative c-myc binding protein) (c-Myc-binding protein),c-Myc-binding protein transcription coactivator activity [GO:0003713]; regulation of transcription, DNA-templated [GO:0006355] locus:504955998; AT2G14045 c-Myc-binding Os07g0185800 protein (cDNA clone:001-110-C09, full insert sequence) Q0D842 Q0D842_ORYSJ Os07g0185800 Os07g0185800 OSNPB_070185800 ENOG411E5YR SECE1 O23342 SECE1_ARATH Preprotein translocase subunit SECE1 DISRUPTION PHENOTYPE: Seedling lethal. Albino seedlings with yellow and translucent (glassy) lateral organs when grown heterotrophically. {ECO:0000269|PubMed:21051552}. Seedling lethal; Albino embryos-D. Fernandez-2011 FUNCTION: Involved in the import/insertion pathway in the thylakoids. The signal recognition particle is not involved in the insertion of SECE1 in the thylakoid membrane. {ECO:0000269|PubMed:11389897, ECO:0000269|PubMed:21051552}. 19121 Preprotein translocase subunit SECE1 chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein secretion [GO:0009306]; protein targeting [GO:0006605] locus:2130409; AT4G14870 NA Os08g0399050 protein,Os04g0306750 protein (Fragment) A0A0P0XFI7,A0A0P0W8V9 A0A0P0XFI7_ORYSJ,A0A0P0W8V9_ORYSJ Os08g0399050 OSNPB_080399050,Os04g0306750 OSNPB_040306750 ENOG411E5YU GATA21 Q5HZ36 GAT21_ARATH GATA transcription factor 21 reduced chlorophyll levels. A transcript profiling experiment revealed that a considerable proportion of genes downregulated in the loss-of- function mutants are involved in carbon metabolism. More sensitive to exogenous glucose Pale green leaves-S. Rothstein-2005 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 44840 GATA transcription factor 21 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623]; gibberellic acid mediated signaling pathway [GO:0009740]; glucose mediated signaling pathway [GO:0010255]; negative regulation of flower development [GO:0009910]; negative regulation of seed germination [GO:0010187]; regulation of chlorophyll biosynthetic process [GO:0010380]; regulation of gene expression [GO:0010468]; regulation of nitrogen compound metabolic process [GO:0051171]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] locus:2170277; AT5G56860 transcription factor NA NA NA NA NA NA NA ENOG411E5YT SAUR40 O64538 SAU40_ARATH Auxin-responsive protein SAUR40 (Protein SMALL AUXIN UP RNA 40) FUNCTION: Plays a role in the regulation of cell expansion, root meristem patterning and auxin transport. {ECO:0000250|UniProtKB:Q9SA49}. 14600 Auxin-responsive protein SAUR40 (Protein SMALL AUXIN UP RNA 40) cytoplasm [GO:0005737]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008] locus:2207375; AT1G79130 auxin-responsive Os06g0671150 protein A3BEJ0 A3BEJ0_ORYSJ Os06g0671150 Os06g0671150 OsJ_22325 OSNPB_060671150 ENOG411E5YW YUP8H12R.31 Q8GXI5 Q8GXI5_ARATH SNARE-associated protein-like protein (Uncharacterized protein At1g79070) (Uncharacterized protein At1g79070/YUP8H12R_17) 14883 SNARE-associated protein-like protein (Uncharacterized protein At1g79070) (Uncharacterized protein At1g79070/YUP8H12R_17) BLOC-1 complex [GO:0031083]; intracellular protein transport [GO:0006886] locus:2207425; AT1G79070 NA Os08g0129900 protein A0A0N7KP82 A0A0N7KP82_ORYSJ Os08g0129900 OSNPB_080129900 ENOG411E5YV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein Os04g0629400,Os04g0629400 protein (Fragment) Q0J9V6,A0A0N7KJR5 Y4294_ORYSJ,A0A0N7KJR5_ORYSJ Os04g0629400 LOC_Os04g53730 OSJNBa0089N06.15,Os04g0629400 OSNPB_040629400 ENOG411E5YY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0230000 protein (cDNA clone:002-156-F07, full insert sequence) Q6H529 Q6H529_ORYSJ Os02g0230000 OsJ_05975 OSJNBb0035N08.25-1 OSNPB_020230000 ENOG411E5YX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dna binding protein DNA-binding protein-like (Os01g0246601 protein) Q1EHT3 Q1EHT3_ORYSJ Os01g0246601 Os01g0246601 OSJNBa0004G10.22 OSNPB_010246601 ENOG411E5YZ MAKR6 Q84JK8 MAKR6_ARATH Probable membrane-associated kinase regulator 6 FUNCTION: May be involved in abscisic acid signaling by acting as a kinase regulator. {ECO:0000269|PubMed:15772289}. 27070 Probable membrane-associated kinase regulator 6 plasma membrane [GO:0005886]; abscisic acid-activated signaling pathway [GO:0009738] locus:2176892; AT5G52900 membrane-associated kinase regulator NA NA NA NA NA NA NA ENOG411E5YA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os11g0587400 protein A0A0P0Y3T6 A0A0P0Y3T6_ORYSJ Os11g0587400 OSNPB_110587400 ENOG411E5YC MNL12.8 Q94CB5 Q94CB5_ARATH Chaperone protein dnaJ-like protein (Uncharacterized protein At5g43260) 10066 Chaperone protein dnaJ-like protein (Uncharacterized protein At5g43260) integral component of membrane [GO:0016021] locus:2169243; AT5G43260 drought-induced protein 1 Os02g0506600 protein (Putative drought-induced protein) (cDNA clone:002-135-D03, full insert sequence) Q6K6K3 Q6K6K3_ORYSJ Os02g0506600 Os02g0506600 OSNPB_020506600 P0047E05.19 ENOG411E5YB Q9LQT3 Q9LQT3_ARATH At1g75810 (T4O12.4) (Transmembrane protein) (Uncharacterized protein At1g75810) 13323 At1g75810 (T4O12.4) (Transmembrane protein) (Uncharacterized protein At1g75810) integral component of membrane [GO:0016021] locus:2204335; AT1G75810 NA NA NA NA NA NA NA NA ENOG411E5YE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5YD RBG7,RBG1,CCR1,GRP7 Q03250,Q9SIX3,Q9SJ28,F4JVC1,F4JVB9,F4JVC0,F4IHK9 RBG7_ARATH,RBG1_ARATH,Q9SJ28_ARATH,F4JVC1_ARATH,F4JVB9_ARATH,F4JVC0_ARATH,F4IHK9_ARATH Glycine-rich RNA-binding protein 7 (AtGR-RBP7) (AtRBG7) (Glycine-rich protein 7) (AtGRP7) (Protein COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) (Protein CCR2),Probable glycine-rich RNA-binding protein 1 (AtGR-RBP1) (AtRBG1),Putative glycine-rich RNA binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),Cold, circadian rhythm, and RNA binding 1,Cold, circadian rhythm, and rna binding 2 DISRUPTION PHENOTYPE: Hypersensitive responses to ABA in both seed germination and root growth. Late-flowering. Increased germination rate and seedling growth under salt and dehydration stress. Impaired mRNA export under cold stress conditions. Defective in PAMP-triggered immunity (PTI) responses and high susceptibility to P.syringae and P.carotovorum SCC1 (Pec). {ECO:0000269|PubMed:17001447, ECO:0000269|PubMed:17450127, ECO:0000269|PubMed:18410480, ECO:0000269|PubMed:18573194, ECO:0000269|PubMed:22013065, ECO:0000269|PubMed:22902796}. Increased susceptibility to P. syringae infection. Reduced callose deposition suggests defect in innate immune response.,Late flowering in both long and short days.,grp7-KD (knock-down) mutants are less-sensitive to osmotic stress based on germination assays and more sensitive to cold stress based on freezing tolerance analyses than their wild type counterparts.,grp7-KO (knock-out) mutants are less-sensitive to osmotic stress based on germination assays and more sensitive to cold stress based on freezing tolerance analyses than their wild type counterparts. These mutants also have altered stomatal responses. ABA-induced stomatal closure is decreased cold-induced stomatal opening is increased and NaCl and mannitol-induced stomatal closing is increased in grp7-KO plants relative to wild type. There is no difference in stomatal closing in response to light. Germination and root growth sensitive to ABA; Sensitive to a combination of salt and mannitol-G. Xu-2006 FUNCTION: Plays a role in RNA transcription or processing during stress. Binds RNAs and DNAs sequence with a preference to single-stranded nucleic acids. Displays strong affinity to poly(U) and poly(G) sequence. Involved in mRNA alternative splicing of numerous targets by modulating splice site selection. Negatively regulates the circadian oscillations of its own transcript as well as RBG8 transcript. Forms an interlocked post-transcriptional negative feedback loop with the RBG8 autoregulatory circuit. Both proteins negatively autoregulate and reciprocally crossregulate by binding to their pre-mRNAs and promoting unproductive splicing coupled to degradation via the NMD pathway. Involved in the regulation of abscisic acid and stress responses. Affects the growth and stress tolerance under high salt and dehydration stress conditions, and also confers freezing tolerance, particularly via the regulation of stomatal opening and closing in the guard cells. Exhibits RNA chaperone activity during the cold adaptation process. Involved in the export of mRNAs from the nucleus to the cytoplasm under cold stress conditions. Target of the Pseudomonas syringae type III effector HopU1, which could probably be involved in plant innate immunity. Component of the flowering autonomous pathway which promotes floral transition, at least partly by down-regulating FLC. {ECO:0000269|PubMed:11710982, ECO:0000269|PubMed:12535349, ECO:0000269|PubMed:16207746, ECO:0000269|PubMed:17001447, ECO:0000269|PubMed:17169986, ECO:0000269|PubMed:17924945, ECO:0000269|PubMed:18410480, ECO:0000269|PubMed:18573194, ECO:0000269|PubMed:18987006, ECO:0000269|PubMed:19083177, ECO:0000269|PubMed:21511907, ECO:0000269|PubMed:22013065, ECO:0000269|PubMed:22902796, ECO:0000269|PubMed:23042250, ECO:0000269|PubMed:9238008}.,FUNCTION: Possibly has a role in RNA transcription or processing during stress. {ECO:0000250}. MISCELLANEOUS: Plants overexpressing RBG7 display retarded germination and affected seedling growth under salt and dehydration stress conditions, confer freezing tolerance and also possess enhanced resistance to P.syringae. 16890,16026,13456,12807,10864,10230,15548 Glycine-rich RNA-binding protein 7 (AtGR-RBP7) (AtRBG7) (Glycine-rich protein 7) (AtGRP7) (Protein COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) (Protein CCR2),Probable glycine-rich RNA-binding protein 1 (AtGR-RBP1) (AtRBG1),Putative glycine-rich RNA binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),Cold, circadian rhythm, and RNA binding 1,Cold, circadian rhythm, and rna binding 2 apoplast [GO:0048046]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; double-stranded DNA binding [GO:0003690]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; alternative mRNA splicing, via spliceosome [GO:0000380]; circadian rhythm [GO:0007623]; DNA duplex unwinding [GO:0032508]; innate immune response [GO:0045087]; mRNA export from nucleus [GO:0006406]; regulation of stomatal movement [GO:0010119]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; response to zinc ion [GO:0010043]; RNA secondary structure unwinding [GO:0010501]; vegetative to reproductive phase transition of meristem [GO:0010228],RNA binding [GO:0003723]; response to cold [GO:0009409],RNA binding [GO:0003723] TISSUE SPECIFICITY: Ubiquitous with strong expression in guard cell. {ECO:0000269|PubMed:18410480, ECO:0000269|PubMed:7513083}. locus:2049359;,locus:2049339; AT2G21660,AT2G16260,AT2G21690,AT4G39260 Glycine-rich RNA-binding protein Os03g0670700 protein (Retrotransposon protein, putative, Ty1-copia subclass, expressed),Glycine-rich RNA binding protein (Glycine-rich RNA-binding protein, putative) (Os03g0670700 protein) (Receptor-like serine threonine kinase) (Retrotransposon protein, putative, Ty1-copia subclass, expressed) (cDNA clone:J023037K17, full insert sequence),Glycine-rich RNA-binding protein GRP1A, putative, expressed (Os12g0632000 protein) (cDNA, clone: J100087I01, full insert sequence),Os03g0670700 protein Q10FE7,Q6ASX7,Q2QLR2,A0A0P0W1Y6,A0A0P0W1U8 Q10FE7_ORYSJ,Q6ASX7_ORYSJ,Q2QLR2_ORYSJ,A0A0P0W1Y6_ORYSJ,A0A0P0W1U8_ORYSJ Os03g0670700 LOC_Os03g46770 Os03g0670700 OSNPB_030670700,Os03g0670700 LOC_Os03g46770 B1130H05.5 OSNPB_030670700,Os12g0632000 LOC_Os12g43600 Os12g0632000 OsJ_36973 OSNPB_120632000,Os03g0670700 OSNPB_030670700 ENOG411E5YG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HMG1 2-like HMG protein (HMG transcription factor) (OSJNBa0017B10.6 protein) (Os04g0564600 protein) (cDNA clone:J013151P06, full insert sequence),Os04g0564600 protein Q7XQK2,A0A0P0WDJ2 Q7XQK2_ORYSJ,A0A0P0WDJ2_ORYSJ Os04g0564600 OsJ_15798 OSJNBa0017B10.6 OSNPB_040564600,Os04g0564600 OSNPB_040564600 ENOG411E5YF F12F1.21 O65387 O65387_ARATH F12F1.21 protein (Stigma-specific Stig1 family protein) 15602 F12F1.21 protein (Stigma-specific Stig1 family protein) integral component of membrane [GO:0016021] locus:504956323; AT1G11925 Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411E5YI Q8LEF3 ELOF1_ARATH Transcription elongation factor 1 homolog FUNCTION: Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. {ECO:0000250}. 13885 Transcription elongation factor 1 homolog transcription elongation factor complex [GO:0008023]; metal ion binding [GO:0046872]; RNA polymerase II core binding [GO:0000993]; chromatin-mediated maintenance of transcription [GO:0048096]; transcription elongation from RNA polymerase II promoter [GO:0006368] locus:2161418; AT5G46030 transcription elongation factor 1 Transcription elongation factor 1 homolog Q8LHP0,Q0E463 ELOF1_ORYSJ,Q0E463_ORYSJ Os07g0631100 LOC_Os07g43730 OsJ_25233 P0519E12.3,Os02g0134300 Os02g0134300 OsJ_05282 OSNPB_020134300 FUNCTION: Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. {ECO:0000250}.,FUNCTION: Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. {ECO:0000256|RuleBase:RU364033}. ENOG411E5YH ACBP6 P57752 ACBP6_ARATH Acyl-CoA-binding domain-containing protein 6 (Acyl-CoA binding protein 6) (Acyl-CoA-binding protein) (ACBP) DISRUPTION PHENOTYPE: Enhanced sensitivity to freezing stress. {ECO:0000269|PubMed:18621979}. FUNCTION: Binds medium- and long-chain acyl-CoA esters with very high affinity. May function as an intracellular carrier of acyl-CoA esters. Confers resistance to cold and freezing. Interacts with phosphatidylcholine and derivatives, but not phosphatidic acid and lysophosphatidylcholine. May be involved in phospholipid metabolism. {ECO:0000269|PubMed:18621979, ECO:0000269|PubMed:8660683}. R-ATH-77289; 10386 Acyl-CoA-binding domain-containing protein 6 (Acyl-CoA binding protein 6) (Acyl-CoA-binding protein) (ACBP) cytosol [GO:0005829]; plasma membrane [GO:0005886]; fatty-acyl-CoA binding [GO:0000062]; phosphatidylcholine binding [GO:0031210]; lipid transport [GO:0006869]; response to absence of light [GO:0009646]; response to cold [GO:0009409]; response to freezing [GO:0050826]; response to hypoxia [GO:0001666] TISSUE SPECIFICITY: Mostly expressed in seeds, stems, and siliques, and, to a lower extent, in leaves, flowers, and roots (at protein level). {ECO:0000269|PubMed:18621979, ECO:0000269|PubMed:8660683}. locus:2826180; AT1G31812 acyl-coa-binding protein Acyl-CoA-binding domain-containing protein 3 (Acyl-CoA binding protein 3) (OsACBP3),Acyl-CoA-binding domain-containing protein 1 (Acyl-CoA binding protein 1) (OsACBP1),Acyl-CoA-binding domain-containing protein 2 (Acyl-CoA binding protein 2) (OsACBP2) Q75G87,Q84SC3,Q5VRM0 ACBP3_ORYSJ,ACBP1_ORYSJ,ACBP2_ORYSJ ACBP3 Os03g0576600 LOC_Os03g37960 OSJNBa0008D12.7,ACBP1 Os08g0162800 LOC_Os08g06550 OJ9990_A01.106 OsJ_26146 P0577B11.140,ACBP2 Os06g0115300 LOC_Os06g02490 OsJ_19900 OSJNBa0019F11.14 P0541H01.36 FUNCTION: Binds medium- and long-chain acyl-CoA esters with high affinity. Can interact in vitro with linolenoyl-CoA (PubMed:21128943). Binds phosphatidic acid (PA) and phosphatidylcholine (PC) in vitro. May play a role in the biosynthesis of phospholipids (PubMed:24738983). {ECO:0000269|PubMed:21128943, ECO:0000269|PubMed:24738983}.,FUNCTION: Binds medium- and long-chain acyl-CoA esters with high affinity. Can interact in vitro with palmitoyl-CoA, oleoyl-CoA, linoleoyl-CoA and linolenoyl-CoA (PubMed:21128943). Binds phosphatidic acid (PA) and phosphatidylcholine (PC) in vitro. May play a role in the biosynthesis of phospholipids (PubMed:24738983). {ECO:0000269|PubMed:21128943, ECO:0000269|PubMed:24738983}.,FUNCTION: Binds medium- and long-chain acyl-CoA esters with high affinity. Can interact in vitro with linolenoyl-CoA (PubMed:21128943). Binds palmitoyl-CoA and linoleoyl-CoA in vitro (PubMed:28471368). Binds phosphatidic acid (PA) and phosphatidylcholine (PC) in vitro. May play a role in the biosynthesis of phospholipids (PubMed:24738983). {ECO:0000269|PubMed:21128943, ECO:0000269|PubMed:24738983, ECO:0000269|PubMed:28471368}. ENOG411E5YK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0549100 protein Q84ZC6 Q84ZC6_ORYSJ P0534A03.120 Os07g0549100 OSNPB_070549100 ENOG411E5YJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os03g0180100 protein (Fragment) A0A0P0VTW5 A0A0P0VTW5_ORYSJ Os03g0180100 OSNPB_030180100 ENOG411E5YM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0551000 protein (cDNA clone:001-206-D06, full insert sequence) (cDNA clone:J023086F06, full insert sequence) Q5JK91 Q5JK91_ORYSJ Os01g0551000 Os01g0551000 OSJNBa0024F24.32 OSJNBa0066C06.1 OSNPB_010551000 ENOG411E5Y1 ERF084 Q9M8M5 ERF84_ARATH Ethylene-responsive transcription factor ERF084 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 28827 Ethylene-responsive transcription factor ERF084 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2198978; AT1G80580 AP2 NA NA NA NA NA NA NA ENOG411E5Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0643800 protein A0A0N7KJT2 A0A0N7KJT2_ORYSJ Os04g0643800 OSNPB_040643800 ENOG411E5Y3 T26I12.120 Q9M3C7 Q9M3C7_ARATH Uncharacterized protein At3g55240 (Uncharacterized protein T26I12.120) 11090 Uncharacterized protein At3g55240 (Uncharacterized protein T26I12.120) developmental process [GO:0032502] locus:2100676; AT3G55240 Plant protein 1589 of unknown function (A_thal_3526) NA NA NA NA NA NA NA ENOG411E5Y2 Q8GXU4 Q8GXU4_ARATH At1g65000 (F-box only protein) (Uncharacterized protein At1g65000/F13O11_34) 9752 At1g65000 (F-box only protein) (Uncharacterized protein At1g65000/F13O11_34) locus:2010866; AT1G65000 NA Os03g0857750 protein (Fragment) A0A0P0W689 A0A0P0W689_ORYSJ Os03g0857750 OSNPB_030857750 ENOG411E5Y5 C/VIF1 F4HWQ8,F4J405 CVIF1_ARATH,F4J405_ARATH Cell wall / vacuolar inhibitor of fructosidase 1 (AtC/VIF1),Plant invertase/pectin methylesterase inhibitor superfamily protein DISRUPTION PHENOTYPE: Increased vacuolar invertase activity leading to accumulation of hexose. {ECO:0000269|PubMed:15327983}. FUNCTION: Inhibits fructosidases from vacuoles (vacuolar invertase VI). {ECO:0000269|PubMed:14871666, ECO:0000269|PubMed:15327983}. 22326,11987 Cell wall / vacuolar inhibitor of fructosidase 1 (AtC/VIF1),Plant invertase/pectin methylesterase inhibitor superfamily protein cell wall [GO:0005618]; vacuole [GO:0005773]; enzyme inhibitor activity [GO:0004857]; negative regulation of catalytic activity [GO:0043086],enzyme inhibitor activity [GO:0004857] TISSUE SPECIFICITY: Mostly expressed in roots, senescent leaves and flowers (in sepals), and, to a lower extent, in stems, specifically in the vascular tissues (e.g. in the phloem). {ECO:0000269|PubMed:15327983}. locus:2202605;,locus:2086057; AT1G47960,AT3G17140 Invertase inhibitor NA NA NA NA NA NA NA ENOG411E5Y4 RPS13 Q9CA19 RT13_ARATH Small ribosomal subunit protein S13, mitochondrial (mS13) FUNCTION: Located at the top of the head of the small subunit, it contacts several helices of the 18S rRNA. {ECO:0000250}. 17272 Small ribosomal subunit protein S13, mitochondrial (mS13) mitochondrial small ribosomal subunit [GO:0005763]; mitochondrion [GO:0005739]; small ribosomal subunit [GO:0015935]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412] locus:2203216; AT1G77750 Ribosomal protein S13/S18 NA NA NA NA NA NA NA ENOG411E5Y7 SCI1 Q8GWY0 Q8GWY0_ARATH At1g79200 (Splicing regulatory glutamine/lysine-rich-like protein) (Uncharacterized protein At1g79200/YUP8H12R_37) 19087 At1g79200 (Splicing regulatory glutamine/lysine-rich-like protein) (Uncharacterized protein At1g79200/YUP8H12R_37) nucleus [GO:0005634]; gynoecium development [GO:0048467] locus:2207335; AT1G79200 NA Os02g0170200 protein (cDNA clone:002-132-H11, full insert sequence) Q6H712 Q6H712_ORYSJ Os02g0170200 OJ1116_A06.25 OsJ_05552 OSNPB_020170200 P0030G02.15 ENOG411E5Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0494000 protein (cDNA clone:001-122-C10, full insert sequence),Os06g0494000 protein (Fragment) Q651J2,A0A0N7KM56 Q651J2_ORYSJ,A0A0N7KM56_ORYSJ B1423D04.24-1 Os06g0494000 OSNPB_060494000,Os06g0494000 OSNPB_060494000 ENOG411E5Y9 F7A19.2 Q9XI93 Q9XI93_ARATH At1g13930/F16A14.27 (F16A14.14) (F7A19.2 protein) (Oleosin-B3-like protein) Increased sensitivity to salt stress. Sensitive to salt-C. Xiang-2008 16164 At1g13930/F16A14.27 (F16A14.14) (F7A19.2 protein) (Oleosin-B3-like protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plasma membrane [GO:0005886]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651] locus:2035837; AT1G13930 NA Expressed protein (Os10g0330000 protein) (cDNA clone:001-020-G07, full insert sequence) (cDNA clone:J023043A18, full insert sequence) (cDNA clone:J023092O07, full insert sequence) Q7G649 Q7G649_ORYSJ LOC_Os10g18340 Os10g0330000 OSJNAb0008A05.8 OSJNBb0008A05.1 OSNPB_100330000 ENOG411E5Y8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0371500 protein Q60EW2 Q60EW2_ORYSJ Os05g0371500 OJ1118_F06.14 OsJ_18301 OSNPB_050371500 ENOG411DS21 GXM2,GXM3,GXM1 Q9T0F7,Q9LQ32,Q6NMK1 GXM2_ARATH,GXM3_ARATH,GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 2 (EC 2.1.1.112),Glucuronoxylan 4-O-methyltransferase 3 (EC 2.1.1.112),Glucuronoxylan 4-O-methyltransferase 1 (EC 2.1.1.112) DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with GXM1 and GXM3. Gxm2 and gxm3 double mutants show reduced stem mechanical strength. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:23045523}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with GXM1 and GXM2. Reduced levels of methylated glucuronic acids. Gxm2 and gxm3 double mutants show reduced stem mechanical strength. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:23045523}.,DISRUPTION PHENOTYPE: No visible phenotype, due to redundancy with GXM2 and GXM3. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:23045523}. FUNCTION: Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan. {ECO:0000269|PubMed:23045523}. 2.1.1.112 32837,33670,31883 Glucuronoxylan 4-O-methyltransferase 2 (EC 2.1.1.112),Glucuronoxylan 4-O-methyltransferase 3 (EC 2.1.1.112),Glucuronoxylan 4-O-methyltransferase 1 (EC 2.1.1.112) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucuronoxylan 4-O-methyltransferase activity [GO:0030775]; xylan biosynthetic process [GO:0045492]; xylan metabolic process [GO:0045491],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucuronoxylan 4-O-methyltransferase activity [GO:0030775]; lignin metabolic process [GO:0009808]; polysaccharide metabolic process [GO:0005976]; xylan biosynthetic process [GO:0045492]; xylan metabolic process [GO:0045491] DEVELOPMENTAL STAGE: Up-regulated during secondary cell wall deposition. {ECO:0000269|PubMed:21251108}. TISSUE SPECIFICITY: Expressed in roots, rosette leaves and stems. {ECO:0000269|PubMed:21288268, ECO:0000269|PubMed:23045523}.,TISSUE SPECIFICITY: Expressed in hypocotyls, roots, rosette leaves, stems and siliques. {ECO:0000269|PubMed:21288268, ECO:0000269|PubMed:23045523}.,TISSUE SPECIFICITY: Expressed in rosette leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21288268, ECO:0000269|PubMed:23045523}. locus:2140518;,locus:2012728;,locus:2012350; AT4G09990,AT1G33800,AT1G09610 glucuronoxylan 4-O-methyltransferase activity Os12g0204500 protein (cDNA clone:J023038F14, full insert sequence) Q2QW75 Q2QW75_ORYSJ Os12g0204500 LOC_Os12g10320 Os12g0204500 OSNPB_120204500 ENOG411DS20 FTSH4 O80983 FTSH4_ARATH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (AtFTSH4) (EC 3.4.24.-) Asymmetric rosette leaves with irregular serration under short days-H. Janska-2009 FUNCTION: Probable ATP-dependent zinc metallopeptidase. Involved in the assembly and/or stability of the complex V of the mitochondrial oxidative phosphorylation system. {ECO:0000269|Ref.9}. MISCELLANEOUS: In contrast to fungi and metazoa, plant mitochondria have more than one i-AAA-like complexes. 3.4.24.B20; 3.4.24.- 77275 ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (AtFTSH4) (EC 3.4.24.-) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; meristem maintenance [GO:0010073]; proteolysis [GO:0006508] locus:2057386; AT2G26140 ATP-dependent zinc metalloprotease FTSH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (OsFTSH4) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 5, mitochondrial (OsFTSH5) (EC 3.4.24.-),Os01g0574500 protein (Fragment),Os01g0574400 protein (Fragment) Q8LQJ9,Q8LQJ8,A0A0P0V4G1,A0A0P0V4C3 FTSH4_ORYSJ,FTSH5_ORYSJ,A0A0P0V4G1_ORYSJ,A0A0P0V4C3_ORYSJ FTSH4 Os01g0574400 LOC_Os01g39250 B1151A10.24-2 OsJ_002240,FTSH5 Os01g0574500 LOC_Os01g39260 B1151A10.26-1 OsJ_002241,Os01g0574500 OSNPB_010574500,Os01g0574400 OSNPB_010574400 FUNCTION: Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. ENOG411DS22 BOA,LUX,PCL1 Q9LTH4,Q9SNB4,F4J959 PCLL_ARATH,PCL1_ARATH,F4J959_ARATH Transcription factor BOA (Protein BROTHER OF LUX ARRHYTHMO) (Protein PHYTOCLOCK 1-like) (Protein PCL1-like),Transcription factor LUX (Protein LUX ARRHYTHMO) (Protein PHYTOCLOCK 1),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Mutant plant flowering lacks a photoperiodic response. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597}. Long hypocotyl. Plants flower early in short- and long-day conditions. Arrhythmic CAB2:LUC (reporter gene) expression and leaf movement in constant light monochromatic red or blue light. Arrhythmic CCR2::LUC (reporter gene) expression in constant dark and constant light.,Long hypocotyl. Plants flower early in short- and long-day conditions. Arrhythmic CAB2:LUC (reporter gene) expression and leaf movement in constant light monochromatic red or blue light.,Long hypocotyl seedlings. Arrhythmic CAB2::LUC (reporter gene) expression under constant light. Abnormal circadian rhythms-M. Ishiura-2005 FUNCTION: Transcription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.,FUNCTION: Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}. 32367,34649,35012 Transcription factor BOA (Protein BROTHER OF LUX ARRHYTHMO) (Protein PHYTOCLOCK 1-like) (Protein PCL1-like),Transcription factor LUX (Protein LUX ARRHYTHMO) (Protein PHYTOCLOCK 1),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; positive regulation of circadian rhythm [GO:0042753]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2148348;,locus:2075200; AT5G59570,AT3G46640 MYB family transcription factor Transcription factor PCL1 (Protein PHYTOCLOCK 1 homolog) (OsPCL1) Q94DH3 PCL1_ORYSJ PCL1 Os01g0971800 OsJ_04927 P0518C01.17 FUNCTION: Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. ENOG411DR5U SHM6,SHM7 Q9LM59,Q84WV0 GLYC6_ARATH,GLYC7_ARATH Serine hydroxymethyltransferase 6 (AtSHMT6) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 6) (Serine methylase 6),Serine hydroxymethyltransferase 7 (AtSHMT7) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 7) (Serine methylase 7) FUNCTION: Catalyzes the interconversion of serine and glycine. {ECO:0000250}. PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. ARA:AT1G22020-MONOMER;,ARA:AT1G36370-MONOMER; 2.1.2.1 66647,66294 Serine hydroxymethyltransferase 6 (AtSHMT6) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 6) (Serine methylase 6),Serine hydroxymethyltransferase 7 (AtSHMT7) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 7) (Serine methylase 7) cytoplasm [GO:0005737]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; glycine biosynthetic process [GO:0006545]; tetrahydrofolate interconversion [GO:0035999],cytoplasm [GO:0005737]; nucleus [GO:0005634]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; glycine biosynthetic process [GO:0006545]; regulation of DNA methylation [GO:0044030]; response to cadmium ion [GO:0046686]; S-adenosylmethionine metabolic process [GO:0046500]; sulfate ion homeostasis [GO:0055063]; tetrahydrofolate interconversion [GO:0035999] locus:2030581;,locus:2035937; AT1G22020,AT1G36370 interconversion of serine and glycine (By similarity) Serine hydroxymethyltransferase (EC 2.1.2.1),Os01g0874900 protein (Putative hydroxymethyltransferase) (Putative serine hydroxymethyltransferase) (cDNA clone:J033132G05, full insert sequence) Q75HP7,Q8RYY6 Q75HP7_ORYSJ,Q8RYY6_ORYSJ Os05g0429000 Os05g0429000 OSJNBb0048I21.4 OSNPB_050429000 P0636F09.21,P0648C09.14 Os01g0874900 OsJ_04263 OSNPB_010874900 P0698A10.15 FUNCTION: Interconversion of serine and glycine. {ECO:0000256|RuleBase:RU000585}. ENOG411DS2U PCMP-E105 P0C8Q7 PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305 59918 Pentatricopeptide repeat-containing protein At5g08305 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:6530298236; AT5G08305 Pentatricopeptide repeat-containing protein Os10g0442700 protein (Pentatricopeptide, putative) (cDNA clone:J013052M01, full insert sequence) (cDNA clone:J033033A09, full insert sequence) Q7XE15 Q7XE15_ORYSJ Os10g0442700 LOC_Os10g30590 Os10g0442700 OSNPB_100442700 ENOG411DR5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os07g0664600 protein (cDNA clone:006-211-C09, full insert sequence),Os07g0664200 protein (cDNA clone:002-154-H12, full insert sequence),Os07g0663700 protein (Fragment),Os07g0664150 protein,Os12g0260500 protein (Fragment),Os07g0664000 protein,Os07g0663800 protein (Fragment),Os07g0663900 protein,Os07g0592100 protein (Fragment) Q0D3U8,Q0D3V2,A0A0P0XA86,A0A0P0X9U1,A0A0P0Y8Z9,A0A0P0XA14,A0A0P0X9S9,A0A0P0X9T5,A0A0P0X8K6 Q0D3U8_ORYSJ,Q0D3V2_ORYSJ,A0A0P0XA86_ORYSJ,A0A0P0X9U1_ORYSJ,A0A0P0Y8Z9_ORYSJ,A0A0P0XA14_ORYSJ,A0A0P0X9S9_ORYSJ,A0A0P0X9T5_ORYSJ,A0A0P0X8K6_ORYSJ Os07g0664600 Os07g0664600 OSNPB_070664600,Os07g0664200 Os07g0664200 OSNPB_070664200,Os07g0663700 OSNPB_070663700,Os07g0664150 OSNPB_070664150,Os12g0260500 OSNPB_120260500,Os07g0664000 OSNPB_070664000,Os07g0663800 OSNPB_070663800,Os07g0663900 OSNPB_070663900,Os07g0592100 OSNPB_070592100 ENOG411DR5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NifU-like protein 4 Os05g0155300 protein (cDNA clone:J023010L13, full insert sequence) Q5WMY1 Q5WMY1_ORYSJ Os05g0155300 OsJ_17174 OSNPB_050155300 P0431G05.7 ENOG411DR5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0673500 protein (Transcription factor-like) Q6EPG4 Q6EPG4_ORYSJ Os02g0673500 Os02g0673500 OsJ_07902 OSNPB_020673500 P0657H12.6 ENOG411DR5P Q8VY61 Q8VY61_ARATH 50S ribosomal protein L4 (Ribosomal protein L4/L1 family) 33263 50S ribosomal protein L4 (Ribosomal protein L4/L1 family) cytosolic ribosome [GO:0022626]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2061659; AT2G20060 ribosomal protein Os11g0585700 protein (Ribosomal protein L4/L1 family protein, expressed),Os12g0488600 protein Q2R1Z9,A0A0P0YA90 Q2R1Z9_ORYSJ,A0A0P0YA90_ORYSJ LOC_Os11g37510 Os11g0585700 OSNPB_110585700,Os12g0488600 OSNPB_120488600 ENOG411DR5R F18E5.200 O65423,B9DGL1,A8MRW5 O65423_ARATH,B9DGL1_ARATH,A8MRW5_ARATH AT4g21580/F18E5_200 (Oxidoreductase, zinc-binding dehydrogenase family protein) (Putative NADPH quinone oxidoreductase),AT4G21580 protein (Oxidoreductase, zinc-binding dehydrogenase family protein),Oxidoreductase, zinc-binding dehydrogenase family protein ARA:AT4G21580-MONOMER; R-ATH-6803205; 34465,30839,33835 AT4g21580/F18E5_200 (Oxidoreductase, zinc-binding dehydrogenase family protein) (Putative NADPH quinone oxidoreductase),AT4G21580 protein (Oxidoreductase, zinc-binding dehydrogenase family protein),Oxidoreductase, zinc-binding dehydrogenase family protein cytosol [GO:0005829]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:2119682; AT4G21580 Quinone oxidoreductase Os02g0805600 protein (Putative quinone oxidoreductase) (cDNA clone:006-205-D12, full insert sequence) (cDNA clone:006-307-G03, full insert sequence),Os06g0208151 protein (Fragment) Q6K840,A0A0P0WU47 Q6K840_ORYSJ,A0A0P0WU47_ORYSJ Os02g0805600 Os02g0805600 OJ1111_C07.1 OJ1548_F12.23 OsJ_08782 OSNPB_020805600,Os06g0208151 OSNPB_060208151 ENOG411DR5X NAD-ME2,NAD-ME1 Q8L7K9,Q9SIU0 MAO2_ARATH,MAO1_ARATH NAD-dependent malic enzyme 2, mitochondrial (AtNAD-ME2) (NAD-malic enzyme 2) (EC 1.1.1.39),NAD-dependent malic enzyme 1, mitochondrial (AtNAD-ME1) (NAD-malic enzyme 1) (EC 1.1.1.39) DISRUPTION PHENOTYPE: When associated with NAD-ME1 disruption, loss of NAD-dependent malic enzyme activity associated with an altered steady-state levels of sugars and amino acids at the end of the light period. {ECO:0000269|PubMed:18223148}.,DISRUPTION PHENOTYPE: When associated with NAD-ME2 disruption, loss of NAD-dependent malic enzyme activity associated with an altered steady-state levels of sugars and amino acids at the end of the light period. {ECO:0000269|PubMed:18223148}. The nad-me1.1 / nad-me2.1 double mutant has no detectable NAD-dependent malic enzyme activity. However it appears to grow and develop normally and to have normal photosynthetic parameters. However the levels of several metabolites including fructose galactose sucrose 2-oxoglutarate succinate fumarate citrate and several amino acids are altered in these double mutants relative to wild type plants. The metabolites affected differ depending on whether the analyses are done at the end of the day or end of the night.,The nad-me2.1 mutants appear to grow and develop normally and display normal photosynthetic behavior however the plants have a significant reduction in NAD-dependent malic enzyme activity.,The nad-me1.1 mutants appear to grow and develop normally and display normal photosynthetic behavior however the plants have a significant reduction in NAD-dependent malic enzyme activity. FUNCTION: Involved in the regulation of sugars and amino acids metabolisms during the night period. {ECO:0000269|PubMed:18223148}. ARA:AT4G00570-MONOMER;,ARA:AT2G13560-MONOMER; 1.1.1.39; 1.1.1.39 66641,69656 NAD-dependent malic enzyme 2, mitochondrial (AtNAD-ME2) (NAD-malic enzyme 2) (EC 1.1.1.39),NAD-dependent malic enzyme 1, mitochondrial (AtNAD-ME1) (NAD-malic enzyme 1) (EC 1.1.1.39) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; NAD binding [GO:0051287]; protein homodimerization activity [GO:0042803]; zinc ion binding [GO:0008270]; malate metabolic process [GO:0006108]; pyruvate metabolic process [GO:0006090],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; malate dehydrogenase (decarboxylating) (NAD+) activity [GO:0004471]; NAD binding [GO:0051287]; protein homodimerization activity [GO:0042803]; zinc ion binding [GO:0008270]; malate metabolic process [GO:0006108]; pyruvate metabolic process [GO:0006090]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: In flowers, mostly present in anthers, stigmatic papillae, gynoecium (apical part) and filaments, and, barely in sepals (at protein level). In developing siliques, localized in the apical part and the abscission zone. In seedlings, expressed in cotyledons, hypocotyls, and root tip. Accumulates slowly in leaves as they mature, in the mesophyll and the cells that surround the vascular bundles. {ECO:0000269|PubMed:18223148, ECO:0000269|PubMed:20133948}.,DEVELOPMENTAL STAGE: In flowers, mostly present in sepals, stigmatic papillae, gynoecium (apical part) and filaments. Excluded from anthers (at protein level). In developing siliques, localized in the apical part and the abscission zone. In seedlings, expressed in cotyledons, hypocotyls, and root tip. Accumulates slowly in leaves as they mature, in the mesophyll and the cells that surround the vascular bundles. {ECO:0000269|PubMed:18223148, ECO:0000269|PubMed:20133948}. TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, and roots (at protein level). Present in pollen. {ECO:0000269|PubMed:18223148, ECO:0000269|PubMed:20133948}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, and roots (at protein level). {ECO:0000269|PubMed:18223148, ECO:0000269|PubMed:20133948}. locus:2127038;,locus:2054085; AT4G00570,AT2G13560 malic enzyme Malic enzyme,Malic enzyme (Fragment),Os10g0503500 protein (Fragment) Q337E9,Q7F190,A0A0P0XWJ6,A0A0N7KNH1,A0A0P0XWH9 Q337E9_ORYSJ,Q7F190_ORYSJ,A0A0P0XWJ6_ORYSJ,A0A0N7KNH1_ORYSJ,A0A0P0XWH9_ORYSJ Os10g0503500 LOC_Os10g35960 Os10g0503500 OSNPB_100503500,OJ1457_D07.117 Os07g0496200 OsJ_24330 OSNPB_070496200,Os10g0503500 OSNPB_100503500,Os07g0496200 OSNPB_070496200 ENOG411DR5Z CSLB2,CSLB5,CSLB3,CSLB1,CSLB4,CSLB6,CSLB06,CSLB02 O80899,Q0WT40,Q8RX83,O80898,O80891,O23386,A0A1P8B5E9,A0A1P8B5F8,A0A1P8AY75,A0A1P8AY23,A0A1P8B5D7,A0A1P8AY24,A0A1P8B5F6 CSLB2_ARATH,CSLB5_ARATH,CSLB3_ARATH,CSLB1_ARATH,CSLB4_ARATH,CSLB6_ARATH,A0A1P8B5E9_ARATH,A0A1P8B5F8_ARATH,A0A1P8AY75_ARATH,A0A1P8AY23_ARATH,A0A1P8B5D7_ARATH,A0A1P8AY24_ARATH,A0A1P8B5F6_ARATH Cellulose synthase-like protein B2 (AtCslB2) (EC 2.4.1.-),Cellulose synthase-like protein B5 (AtCslB5) (EC 2.4.1.-),Cellulose synthase-like protein B3 (AtCslB3) (EC 2.4.1.-),Cellulose synthase-like protein B1 (AtCslB1) (EC 2.4.1.-),Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-),Cellulose synthase-like protein B6 (AtCslB6) (EC 2.4.1.-),Cellulose synthase-like B6,Cellulose synthase-like B6 (Fragment),Cellulose synthase-like B FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ARA:AT2G32620-MONOMER;,ARA:AT4G15290-MONOMER;,ARA:AT2G32530-MONOMER;,ARA:AT2G32610-MONOMER;,ARA:AT2G32540-MONOMER; 2.4.1.- 84261,85201,84889,85061,84986,85579,87685,85337,61253,68742,89159,73221,85708 Cellulose synthase-like protein B2 (AtCslB2) (EC 2.4.1.-),Cellulose synthase-like protein B5 (AtCslB5) (EC 2.4.1.-),Cellulose synthase-like protein B3 (AtCslB3) (EC 2.4.1.-),Cellulose synthase-like protein B1 (AtCslB1) (EC 2.4.1.-),Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-),Cellulose synthase-like protein B6 (AtCslB6) (EC 2.4.1.-),Cellulose synthase-like B6,Cellulose synthase-like B6 (Fragment),Cellulose synthase-like B Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type primary cell wall biogenesis [GO:0009833],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type primary cell wall biogenesis [GO:0009833]; root hair elongation [GO:0048767],integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244],integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose biosynthetic process [GO:0030244] TISSUE SPECIFICITY: Expressed in young seedlings, primarily in the root vascular tissue. {ECO:0000269|PubMed:11554468}.,TISSUE SPECIFICITY: Expressed in young seedlings, primarily in the vascular tissue. Expressed in the root cap. {ECO:0000269|PubMed:11554468}.,TISSUE SPECIFICITY: Expressed in young seedlings, primarily in the vascular tissue. {ECO:0000269|PubMed:11554468}. locus:2060216;,locus:2129915;,locus:2060263;,locus:2060285;,locus:2060211; AT2G32620,AT4G15290,AT2G32530,AT2G32610,AT2G32540,AT4G15320 cellulose synthase-like protein Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1),Cellulose synthase-like protein H2 (EC 2.4.1.-) (OsCslH2),Putative cellulose synthase-like protein H3 (EC 2.4.1.-) (OsCslH3),Os04g0429500 protein,Os10g0341700 protein (Fragment) Q339N5,Q7XUT9,Q7XUU0,A0A0P0WAL7,A0A0P0XSY4,A0A0P0XT09 CSLH1_ORYSJ,CSLH2_ORYSJ,CSLH3_ORYSJ,A0A0P0WAL7_ORYSJ,A0A0P0XSY4_ORYSJ,A0A0P0XT09_ORYSJ CSLH1 Os10g0341700 LOC_Os10g20090 OSJNBa0035F15.9,CSLH2 Os04g0429500 LOC_Os04g35020 OSJNBa0042L16.13,CSLH3 Os04g0429600 LOC_Os04g35030 OSJNBa0042L16.14,Os04g0429500 OSNPB_040429500,Os10g0341700 OSNPB_100341700 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ENOG411DR5E LRL1 A0A1P8B061 A0A1P8B061_ARATH LJRHL1-like 1 25597 LJRHL1-like 1 protein dimerization activity [GO:0046983] transcription factor Os02g0795800 protein,Os06g0184000 protein,Os09g0417400 protein A0A0P0VQL9,A0A0P0WTJ8,A0A0P0XN61 A0A0P0VQL9_ORYSJ,A0A0P0WTJ8_ORYSJ,A0A0P0XN61_ORYSJ Os02g0795800 OSNPB_020795800,Os06g0184000 OSNPB_060184000,Os09g0417400 OSNPB_090417400 ENOG411DR5D PDIL5-2 Q94F09 PDI52_ARATH Protein disulfide-isomerase 5-2 (AtPDIL5-2) (Protein disulfide-isomerase 7-1) (AtPDIL7-1) (Protein disulfide-isomerase 8) (PDI8) FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}. 49851 Protein disulfide-isomerase 5-2 (AtPDIL5-2) (Protein disulfide-isomerase 7-1) (AtPDIL7-1) (Protein disulfide-isomerase 8) (PDI8) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595}. locus:2014681; AT1G35620 Protein disulfide isomerase Os04g0432500 protein (Fragment) A0A0P0WAB5 A0A0P0WAB5_ORYSJ Os04g0432500 OSNPB_040432500 ENOG411DR5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os03g0169300 protein (Pentatricopeptide, putative) (Putative pentatricopeptide repeat containing protein) (cDNA, clone: J090081F08, full insert sequence) Q8S7V8 Q8S7V8_ORYSJ OSJNBa0091P11.22 LOC_Os03g07330 Os03g0169300 OsJ_09569 OSNPB_030169300 ENOG411DR5F T22A15.3 Q9C8W1,F4I1K2 Q9C8W1_ARATH,F4I1K2_ARATH At1g36050 (Endoplasmic reticulum vesicle transporter protein) (Uncharacterized protein At1g36050) (Uncharacterized protein T22A15.3),Endoplasmic reticulum vesicle transporter protein 43358,55482 At1g36050 (Endoplasmic reticulum vesicle transporter protein) (Uncharacterized protein At1g36050) (Uncharacterized protein T22A15.3),Endoplasmic reticulum vesicle transporter protein integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774] locus:2034330; AT1G36050 Endoplasmic reticulum-Golgi intermediate compartment protein NA NA NA NA NA NA NA ENOG411DR5A APY1,APY2,PUB48 Q9SQG2,Q9SPM5,Q3E9F5 APY1_ARATH,APY2_ARATH,PUB48_ARATH Apyrase 1 (AtAPY1) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 1),Apyrase 2 (AtAPY2) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 2),U-box domain-containing protein 48 (EC 2.3.2.27) (Plant U-box protein 48) (RING-type E3 ubiquitin transferase PUB48) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Apy1 and apy2 double mutant displays developmental defects including the lack of functional root and shoot meristems, and morphogenetic and patterning abnormalities of the cotyledons. Double mutant exhibits a complete inhibition of pollen germination. {ECO:0000269|PubMed:12692323, ECO:0000269|PubMed:17434987, ECO:0000269|PubMed:17534719}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Apy1 and apy2 double mutant displays developmental defects including the lack of functional root and shoot meristems, and morphogenetic and patterning abnormalities of the cotyledons. Double mutant exhibits a complete inhibition of pollen germination. {ECO:0000269|PubMed:12692323, ECO:0000269|PubMed:17534719}. FUNCTION: Catalyzes the hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates. Substrate preference is ATP > ADP. Functions with APY2 to reduce extracellular ATP level which is essential for pollen germination and normal plant development. Plays a role in the regulation of stomatal function by modulating extracellular ATP levels in guard cells. {ECO:0000269|PubMed:12692323, ECO:0000269|PubMed:17434987, ECO:0000269|PubMed:17534719, ECO:0000269|PubMed:21636723, ECO:0000269|Ref.1}.,FUNCTION: Catalyzes the hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates. Substrate preference is ATP > ADP. Functions with APY1 to reduce extracellular ATP level which is essential for pollen germination and normal plant development. Plays a role in the regulation of stomatal function by modulating extracellular ATP levels in guard cells. {ECO:0000269|PubMed:12692323, ECO:0000269|PubMed:17534719, ECO:0000269|Ref.2}.,FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. ARA:AT3G04080-MONOMER;,ARA:AT5G18280-MONOMER; R-ATH-8850843; 3.6.1.5,2.3.2.27 51194,51599,50792 Apyrase 1 (AtAPY1) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 1),Apyrase 2 (AtAPY2) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 2),U-box domain-containing protein 48 (EC 2.3.2.27) (Plant U-box protein 48) (RING-type E3 ubiquitin transferase PUB48) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; 8-oxo-dGTP phosphohydrolase activity [GO:0102490]; ATP binding [GO:0005524]; guanosine-diphosphatase activity [GO:0004382]; uridine-diphosphatase activity [GO:0045134]; pollen germination [GO:0009846],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; 8-oxo-dGTP phosphohydrolase activity [GO:0102490]; ATP binding [GO:0005524],ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Expressed in roots, root hairs, root cap, leaves, stems, trichomes, phloem throughout the plant, guard cells, filaments of young stamens, stipules, papillae of stigmas, pollen, pollen tubes and the abscission zone of siliques. {ECO:0000269|PubMed:12692323, ECO:0000269|PubMed:17434987, ECO:0000269|PubMed:17534719, ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Expressed in roots, root hairs, root cap, leaves, stems, trichomes, phloem throughout the plant, guard cells, filaments of young stamens, stipules, papillae of stigmas, pollen, pollen tubes and the abscission zone of siliques. {ECO:0000269|PubMed:12692323, ECO:0000269|PubMed:17534719, ECO:0000269|Ref.2}. locus:2103040;,locus:2146213; AT3G04080,AT5G18280,AT5G18340 K14641 apyrase EC 3.6.1.5 Probable apyrase 1 (OsAPY1) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase),Probable apyrase 2 (OsAPY2) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase),Os03g0328400 protein (Fragment),Os07g0682800 protein (Fragment),Os10g0475400 protein (Fragment) Q8H7L6,Q6Z4P2,Q0DS73,A0A0P0XAI6,A0A0P0XVQ7 APY1_ORYSJ,APY2_ORYSJ,Q0DS73_ORYSJ,A0A0P0XAI6_ORYSJ,A0A0P0XVQ7_ORYSJ APY1 Os03g0328400 LOC_Os03g21120 OSJNBb0014I10.10,APY2 Os07g0682800 LOC_Os07g48430 OsJ_25612 OSJNBa0060O17.4,Os03g0328400 OSNPB_030328400,Os07g0682800 OSNPB_070682800,Os10g0475400 OSNPB_100475400 FUNCTION: Catalyzes the hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates. {ECO:0000250}. ENOG411DR5C F11M15.2 Q9SYB8 Q9SYB8_ARATH At1g51160 (F11M15.2 protein) (SNARE-like superfamily protein) (Uncharacterized protein At1g51160) (Uncharacterized protein F23H24.18) R-ATH-204005;R-ATH-6798695;R-ATH-8876198; 18965 At1g51160 (F11M15.2 protein) (SNARE-like superfamily protein) (Uncharacterized protein At1g51160) (Uncharacterized protein F23H24.18) cytosol [GO:0005829]; TRAPP complex [GO:0030008]; Rab guanyl-nucleotide exchange factor activity [GO:0017112]; ER to Golgi vesicle-mediated transport [GO:0006888] locus:2008326; AT1G51160 Trafficking protein particle complex subunit Os01g0513700 protein (Putative trafficking protein particle complex 1) (cDNA clone:J023001F01, full insert sequence),Os01g0513700 protein (Putative trafficking protein particle complex 1) (cDNA clone:001-015-G05, full insert sequence) Q5QNC8,Q9AWN0 Q5QNC8_ORYSJ,Q9AWN0_ORYSJ P0504D03.30-1 Os01g0513700 OSNPB_010513700,P0504D03.30-2 Os01g0513700 OSNPB_010513700 ENOG411DR5B Q9SFU0 SC24A_ARATH Protein transport protein Sec24-like At3g07100 Null: No homozygous mutant plants recovered; Knockdown: Abnormal ER morphology-F. Brandizzi-2009 FUNCTION: Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity). {ECO:0000250}. R-ATH-204005;R-ATH-5694530;R-ATH-983170; 113960 Protein transport protein Sec24-like At3g07100 COPII vesicle coat [GO:0030127]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi membrane [GO:0000139]; zinc ion binding [GO:0008270]; cell growth [GO:0016049]; endoplasmic reticulum organization [GO:0007029]; ER body organization [GO:0080119]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886]; male gamete generation [GO:0048232]; negative regulation of DNA endoreduplication [GO:0032876]; regulation of cell size [GO:0008361] locus:2098545; AT3G07100 protein transport protein Sec24-like Os04g0129500 protein,Os04g0129500 protein (Fragment) Q0JF82,A0A0P0W6B7,A0A0P0W6L3 Q0JF82_ORYSJ,A0A0P0W6B7_ORYSJ,A0A0P0W6L3_ORYSJ Os04g0129500 Os04g0129500 OSNPB_040129500,Os04g0129500 OSNPB_040129500 ENOG411DR5M UXT2,UXT3 Q8GUJ1,Q8RXL8,A0A1P8B177,A0A1P8B1A0,A0A1P8ANY9,F4HNU3 UXT2_ARATH,UXT3_ARATH,A0A1P8B177_ARATH,A0A1P8B1A0_ARATH,A0A1P8ANY9_ARATH,F4HNU3_ARATH UDP-xylose transporter 2,UDP-xylose transporter 3,Nucleotide/sugar transporter family protein,Nodulin MtN21 /EamA-like transporter family protein FUNCTION: Nucleotide-sugar transporter that transports UDP-xylose and UMP in a strict counter-exchange mode. {ECO:0000269|PubMed:25804536}. 38830,39038,36884,38452,38419,38547 UDP-xylose transporter 2,UDP-xylose transporter 3,Nucleotide/sugar transporter family protein,Nodulin MtN21 /EamA-like transporter family protein Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; UDP-xylose transmembrane transporter activity [GO:0005464]; carbohydrate transport [GO:0008643]; UDP-xylose transport [GO:0015790],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; antiporter activity [GO:0015297]; UDP-xylose transmembrane transporter activity [GO:0005464]; carbohydrate transport [GO:0008643]; UDP-xylose transport [GO:0015790],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:25804536}. locus:2064316;,locus:2033097; AT2G30460,AT1G06890 Triose-phosphate Transporter family Os01g0167500 protein (Putative glucose-6-phosphate/phosphate-tranlocator) (cDNA clone:001-101-A03, full insert sequence) (p0028E10.8 protein),Os01g0823200 protein (cDNA clone:J013056K15, full insert sequence),Os05g0168700 protein (Putative phosphate translocator) (cDNA clone:J013028M22, full insert sequence) Q9AS84,Q0JI57,Q60DT9 Q9AS84_ORYSJ,Q0JI57_ORYSJ,Q60DT9_ORYSJ P0028E10.8 Os01g0167500 OJ1276_B06.6 OsJ_00515 OSNPB_010167500 P0701D05.34,Os01g0823200 Os01g0823200 OSNPB_010823200,Os05g0168700 Os05g0168700 OsJ_17270 OSJNBa0086E02.16 OSNPB_050168700 ENOG411DR5N ADK1,ADK2 Q9SF85,Q9LZG0,A0A1P8BAP0 ADK1_ARATH,ADK2_ARATH,A0A1P8BAP0_ARATH Adenosine kinase 1 (AK 1) (EC 2.7.1.20) (Adenosine 5'-phosphotransferase 1),Adenosine kinase 2 (AK 2) (EC 2.7.1.20) (Adenosine 5'-phosphotransferase 2),Adenosine kinase 2 FUNCTION: ATP dependent phosphorylation of adenosine and other related nucleoside analogs to monophosphate derivatives. Essential to sustain methyl recycling. {ECO:0000269|PubMed:17272833}. PATHWAY: Purine metabolism; AMP biosynthesis via salvage pathway; AMP from adenosine: step 1/1. MetaCyc:AT3G09820-MONOMER;,MetaCyc:AT5G03300-MONOMER; R-ATH-74217; 2.7.1.20; 2.7.1.20 37836,37846,31989 Adenosine kinase 1 (AK 1) (EC 2.7.1.20) (Adenosine 5'-phosphotransferase 1),Adenosine kinase 2 (AK 2) (EC 2.7.1.20) (Adenosine 5'-phosphotransferase 2),Adenosine kinase 2 apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; adenosine kinase activity [GO:0004001]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; adenosine salvage [GO:0006169]; AMP salvage [GO:0044209]; response to cadmium ion [GO:0046686]; response to trehalose-6-phosphate [GO:0080094]; viral process [GO:0016032],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; adenosine kinase activity [GO:0004001]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; adenosine salvage [GO:0006169]; AMP salvage [GO:0044209]; viral process [GO:0016032],adenosine kinase activity [GO:0004001]; purine ribonucleoside salvage [GO:0006166] DEVELOPMENTAL STAGE: Up-regulated during the lignification process in inflorescence stems. {ECO:0000269|PubMed:17272833}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11115893, ECO:0000269|PubMed:17272833}. locus:2085079;,locus:2142609; AT3G09820,AT5G03300 adenosine kinase Os02g0625500 protein (Fragment),Os04g0518000 protein Q0DZE5,Q0JBQ0,A0A0P0VLT9 Q0DZE5_ORYSJ,Q0JBQ0_ORYSJ,A0A0P0VLT9_ORYSJ Os02g0625500 Os02g0625500 OSNPB_020625500,Os04g0518000 Os04g0518000 OSNPB_040518000,Os02g0625500 OSNPB_020625500 ENOG411DR5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_10 Os11g0506150 protein,Os05g0319900 protein,Os05g0298700 protein,Os11g0556866 protein,Os05g0304000 protein A0A0N7KSY9,A0A0P0WKS5,A0A0P0WKA9,A0A0P0Y3L7,A0A0N7KKH7 A0A0N7KSY9_ORYSJ,A0A0P0WKS5_ORYSJ,A0A0P0WKA9_ORYSJ,A0A0P0Y3L7_ORYSJ,A0A0N7KKH7_ORYSJ Os11g0506150 OSNPB_110506150,Os05g0319900 OSNPB_050319900,Os05g0298700 OSNPB_050298700,Os11g0556866 OSNPB_110556866,Os05g0304000 OSNPB_050304000 ENOG411DR5H Q42577 NDUS7_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT5G11770-MONOMER;MetaCyc:AT5G11770-MONOMER; R-ATH-6799198; 1.6.5.3; 1.6.99.3 24044 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; 4 iron, 4 sulfur cluster binding [GO:0051539]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038]; zinc ion binding [GO:0008270] locus:2181885; AT5G11770 NADH dehydrogenase ubiquinone iron-sulfur protein 7 Os05g0533700 protein (Putative NADH-ubiquinone oxidoreductase 20 kDa subunit) (cDNA, clone: J100088K13, full insert sequence),Os01g0720300 protein (Putative NADH2 dehydrogenase (Ubiquinone) chain PSST) Q6I5H0,Q8W0E8 Q6I5H0_ORYSJ,Q8W0E8_ORYSJ Os05g0533700 OSJNBa0053E05.16 OSNPB_050533700,Os01g0720300 OsJ_03280 OSNPB_010720300 P0690B02.5 ENOG411DR5K HSP90-5 Q9SIF2 HS905_ARATH Heat shock protein 90-5, chloroplastic (AtHSP90.5) (AtHsp90-5) (Heat shock protein 88-1) (Hsp88-1) (Hsp90C) (Protein EMBRYO DEFECTIVE 1956) (Protein chlorate-resistance 88) DISRUPTION PHENOTYPE: Embyronic lethality due to embryo development arrest at the heart stage. {ECO:0000269|PubMed:23382192, ECO:0000269|PubMed:23875936}. Embryo defective; Transition-D. Meinke-2002 FUNCTION: Molecular chaperone required for chloroplast biogenesis (PubMed:12943545, PubMed:25216779). Essential for chloroplast biogenesis and maintenance, and thus for embryogenesis (PubMed:23875936, PubMed:23382192). May be involved in the disassembly of VIPP1 for thylakoid membrane formation and/or maintenance (PubMed:23875936). Cooperates with TIC components and other molecular chaperones to drive transport of preproteins into chloroplasts and functions in the chloroplast stroma to facilitate membrane translocation during protein import into the organelle (PubMed:23382192). {ECO:0000269|PubMed:12943545, ECO:0000269|PubMed:23382192, ECO:0000269|PubMed:23875936, ECO:0000269|PubMed:25216779}. MISCELLANEOUS: Plants over-expressing HSP90.7 show albino and stunted leaves. {ECO:0000269|PubMed:23875936}. 88663 Heat shock protein 90-5, chloroplastic (AtHSP90.5) (AtHsp90-5) (Heat shock protein 88-1) (Hsp88-1) (Hsp90C) (Protein EMBRYO DEFECTIVE 1956) (Protein chlorate-resistance 88) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; unfolded protein binding [GO:0051082]; de-etiolation [GO:0009704]; protein folding [GO:0006457]; protein import into chloroplast stroma [GO:0045037]; response to chlorate [GO:0010157]; response to heat [GO:0009408]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] DEVELOPMENTAL STAGE: During embryogenesis, highly expressed at 4 days post anthesis. {ECO:0000269|PubMed:23875936}. TISSUE SPECIFICITY: Expressed in roots, cotyledons, young leaves, mature leaves, stems, flowers, petals and siliques. {ECO:0000269|PubMed:12943545}. locus:2049651; AT2G04030 heat shock protein Os08g0487800 protein (Putative heat-shock protein),Os09g0474300 protein Q6ZCV7,Q0J0Z5 Q6ZCV7_ORYSJ,Q0J0Z5_ORYSJ Os08g0487800 Os08g0487800 OSNPB_080487800 P0028A08.21,Os09g0474300 OSNPB_090474300 ENOG411DR5J LAC14,TT10 Q9FY79,Q84J37 LAC14_ARATH,LAC15_ARATH Laccase-14 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 14) (Diphenol oxidase 14) (Urishiol oxidase 14),Laccase-15 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 15) (Diphenol oxidase 15) (Protein TRANSPARENT TESTA 10) (Urishiol oxidase 15) no observable phenotype,yellow or pale seed color,Seeds from the homozygous mutant plants were golden yellow in comparison to wild-type or heterozygous plants that were dark brown for newly matured seeds.,pale brown seeds due to reduced levels of brown pigment in the outer layers of the seed coat (testa). Pale brown seed coat with dark-brown chalazal zone-I. Debeaujon-2005 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products (By similarity). Involved in lignin synthesis in seed coats, in seed coat permeability, in seed germination, and in root elongation. Required for the seed coat (testa) brown pigmentation by mediating the polymerization of proanthocyanidin (tannin) from its monomer precursor epicatechin. Promotes sligthly seed dormancy. {ECO:0000250, ECO:0000269|PubMed:10677433, ECO:0000269|PubMed:16243908, ECO:0000269|PubMed:16779554, ECO:0000269|PubMed:16804053, ECO:0000269|Ref.4}. ARA:AT5G09360-MONOMER;,ARA:AT5G48100-MONOMER; 1.10.3.2 64878,63994 Laccase-14 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 14) (Diphenol oxidase 14) (Urishiol oxidase 14),Laccase-15 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 15) (Diphenol oxidase 15) (Protein TRANSPARENT TESTA 10) (Urishiol oxidase 15) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin biosynthetic process [GO:0009809]; lignin catabolic process [GO:0046274]; proanthocyanidin biosynthetic process [GO:0010023]; response to copper ion [GO:0046688] DEVELOPMENTAL STAGE: Transcript levels increase during rosette leaves development. In the inflorescence stem, highest levels in the young, developing tip and lowest levels in the basal stem tissues. Strong increase 4 days after fertilization. Specifically localized in developing seed coat (testa). Detected in the endothelium and in the pigment strand at the chalaza zone during early stages of embryo morphogenesis. Later, the activity increased and spread to the outer integument, mostly in the oil penultimate cell layer. Strongly expressed in early aborted seeds and in the transmitting tissue of the silique. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16243908}. TISSUE SPECIFICITY: Expressed at low levels in flowers and siliques. {ECO:0000269|PubMed:16804053}.,TISSUE SPECIFICITY: Mostly expressed in siliques, particularly in developing seeds. Also detected at low levels in stems, seedlings, and flowers. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16243908, ECO:0000269|PubMed:16779554, ECO:0000269|PubMed:16804053}. locus:2184802;,locus:2162677; AT5G09360,AT5G48100 hydroquinone:oxygen oxidoreductase activity Putative laccase-16 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 16) (Diphenol oxidase 16) (Urishiol oxidase 16),Putative laccase-9 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 9) (Diphenol oxidase 9) (Urishiol oxidase 9),Putative laccase-1 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 1) (Diphenol oxidase 1) (Urishiol oxidase 1),Laccase-21 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 21) (Diphenol oxidase 21) (Urishiol oxidase 21),Os01g0374600 protein (Fragment) Q7XE50,Q6Z8L2,Q5ZCW1,Q2QZ80,A0A0P0V333 LAC16_ORYSJ,LAC9_ORYSJ,LAC1_ORYSJ,LAC21_ORYSJ,A0A0P0V333_ORYSJ LAC16 Os10g0437400 LOC_Os10g30140,LAC9 Os02g0749700 LOC_Os02g51440 OsJ_008109 P0431B06.7,LAC1 Os01g0374600 LOC_Os01g27700 B1045D11.30 OsJ_001779,LAC21 Os11g0696900 LOC_Os11g47390,Os01g0374600 OSNPB_010374600 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411DS2R ARC5 Q84N64,F4JCC8 ARC5_ARATH,F4JCC8_ARATH Dynamin-like protein ARC5 (EC 3.6.5.5) (Dynamin-related protein 5B) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 5),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: Defects in plastid constriction leading to large and dumbbell-shaped chloroplasts in mesophyll-cell only. Reduced number of large chloroplasts in green tissues. Mostly normal vascular and epidermal chloroplasts and normal plastid size in non green tissues, sometimes exhibiting alteration in stromule length and frequency (e.g. increase in the frequency of stromules in cells of stamen filaments). Presence of highly clustered peroxisomes unable to complete fission and/or enlarged peroxisomes. Impaired peroxisome-related functions, such as photorespiration and fatty acid beta-oxidation. {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:12232072, ECO:0000269|PubMed:12642673, ECO:0000269|PubMed:18764889, ECO:0000269|PubMed:20179140, ECO:0000269|PubMed:8819323}. Similar to arc5-1 with large centrally constricted chloroplasts.,Leaf mesophyll cells in mutants contain fewer and larger chloroplasts than the wild type cells which have about 120 chloroplasts at maturity. The mutant cells contain between 3 and 15 chloroplasts in fully expanded mesophyll cells. Chloroplasts frequently remain dumbbell. Few, large chloroplasts-R. Leech-1994 FUNCTION: Probable GTPase component of both plastid and peroxisme division machinery. Required for the last steps of plastid division specifically in mesophyll-cell, when the narrow isthmus breaks, facilitating the separation of the daughter plastids. Necessary for peroxisome activities. Seems to influence stromule (stroma-filled tubular extensions of the plastid envelope membrane) length and frequency. {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:12232072, ECO:0000269|PubMed:12642673, ECO:0000269|PubMed:18764889, ECO:0000269|PubMed:20179140, ECO:0000269|PubMed:8819323}. ARA:AT3G19720-MONOMER; 3.6.5.5 87171,87714 Dynamin-like protein ARC5 (EC 3.6.5.5) (Dynamin-related protein 5B) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 5),P-loop containing nucleoside triphosphate hydrolases superfamily protein chloroplast [GO:0009507]; chloroplast outer membrane [GO:0009707]; peroxisome [GO:0005777]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; identical protein binding [GO:0042802]; microtubule binding [GO:0008017]; chloroplast fission [GO:0010020]; circadian rhythm [GO:0007623]; peroxisome fission [GO:0016559],GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2091226; AT3G19720 dynamin-like protein Os12g0178700 protein A0A0N7KTN7 A0A0N7KTN7_ORYSJ Os12g0178700 OSNPB_120178700 ENOG411DR55 SYT3,SYTC Q7XA06,A0A1P8BD17 SYT3_ARATH,A0A1P8BD17_ARATH Synaptotagmin-3 (NTMC2T1.3) (Synaptotagmin C),Calcium-dependent lipid-binding (CaLB domain) family protein FUNCTION: May be involved in membrane trafficking. {ECO:0000250}. 61870,55076 Synaptotagmin-3 (NTMC2T1.3) (Synaptotagmin C),Calcium-dependent lipid-binding (CaLB domain) family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; metal ion binding [GO:0046872],lipid binding [GO:0008289] locus:2146688; AT5G04220 C2 domain Os06g0685300 protein B9FQJ7 B9FQJ7_ORYSJ Os06g0685300 OsJ_22411 OSNPB_060685300 ENOG411DR54 SHM2,SHM1 Q94C74,Q9SZJ5 GLYM2_ARATH,GLYM1_ARATH Serine hydroxymethyltransferase 2, mitochondrial (AtSHMT2) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 2) (Serine methylase 2),Serine hydroxymethyltransferase 1, mitochondrial (AtSHMT1) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 1) (Serine Transhydroxymethyltransferase) (STM) (Serine methylase 1) DISRUPTION PHENOTYPE: Does not display a lethal photorespiratory phenotype when grown at ambient carbon dioxide. {ECO:0000269|PubMed:16339799}.,DISRUPTION PHENOTYPE: Displays a lethal photorespiratory phenotype when grown at ambient carbon dioxide. {ECO:0000269|PubMed:15659103, ECO:0000269|PubMed:16339799}. Photorespiratory phenotype: chlorosis at ambient CO2 levels fully rescued at 3% CO2.,forms chlorotic lesions shortly after germination which spread as the plant grow and is most prominent between leaf veins. The intensity of the chlorosis and the affected leaf surface increases during maturation until HR-like necrotic spots appear inside the chlorotic area. shmt1-1 plants also display a reduction in size and rate of development compared with wild-type controls.,Dramatic dwarf and chlorotic phenotype when grown on soil and on axenic MS medium.,Enhanced H2O2 accumulation.,shmt1-2 plants died without producing progeny under the growth conditions used in this study. Rosette lethal at ambient CO2 levels-A. Weber-2006 FUNCTION: Functions outside the photorespiratory pathway in catalyzing the interconversion of serine and glycine. {ECO:0000269|PubMed:16339799, ECO:0000269|PubMed:21976482}.,FUNCTION: Functions in the photorespiratory pathway in catalyzing the interconversion of serine and glycine. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants. {ECO:0000269|PubMed:15659103, ECO:0000269|PubMed:16339799, ECO:0000269|PubMed:21976482, ECO:0000269|PubMed:23232097}. MISCELLANEOUS: Recessive mutant shmt1-1 (shm1-3) shows enhanced susceptibility to salt stress and to biotrophic and necrotrophic pathogens. {ECO:0000305|PubMed:15659103}. PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. ARA:AT4G37930-MONOMER;MetaCyc:AT4G37930-MONOMER; R-ATH-196757;R-ATH-71262; 2.1.2.1 57342,57401 Serine hydroxymethyltransferase 2, mitochondrial (AtSHMT2) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 2) (Serine methylase 2),Serine hydroxymethyltransferase 1, mitochondrial (AtSHMT1) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 1) (Serine Transhydroxymethyltransferase) (STM) (Serine methylase 1) cytosol [GO:0005829]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; zinc ion binding [GO:0008270]; glycine biosynthetic process [GO:0006545]; glycine metabolic process [GO:0006544]; L-serine metabolic process [GO:0006563]; tetrahydrofolate interconversion [GO:0035999],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; stromule [GO:0010319]; glycine hydroxymethyltransferase activity [GO:0004372]; poly(U) RNA binding [GO:0008266]; pyridoxal phosphate binding [GO:0030170]; circadian rhythm [GO:0007623]; glycine biosynthetic process [GO:0006545]; glycine metabolic process [GO:0006544]; L-serine metabolic process [GO:0006563]; photorespiration [GO:0009853]; plant-type hypersensitive response [GO:0009626]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; tetrahydrofolate interconversion [GO:0035999] TISSUE SPECIFICITY: Ubiquitous. Mainly expressed in the shoot apical meristem and roots. Also detected in the leaf vasculature, especially in the protoxylem and adjacent cell layers. {ECO:0000269|PubMed:16339799, ECO:0000269|PubMed:21976482}.,TISSUE SPECIFICITY: Ubiquitous. Mostly expressed in leaves, less abundant in stems, flowers and siliques, and barely detectable in roots. {ECO:0000269|PubMed:10806255, ECO:0000269|PubMed:15659103, ECO:0000269|PubMed:16339799, ECO:0000269|PubMed:21976482}. locus:2148463;,locus:2005518; AT5G26780,AT4G37930 interconversion of serine and glycine (By similarity) Serine hydroxymethyltransferase (EC 2.1.2.1),Serine hydroxymethyltransferase (EC 2.1.2.1) (Fragment) Q10D68,A0A0P0W2R2 Q10D68_ORYSJ,A0A0P0W2R2_ORYSJ Os03g0738400 LOC_Os03g52840 Os03g0738400 OSNPB_030738400,Os03g0738400 OSNPB_030738400 FUNCTION: Interconversion of serine and glycine. {ECO:0000256|RuleBase:RU000585}. ENOG411DR57 ATN1,MNF13.60 Q9LT56,Q8L6Y9,Q9FM43,Q9FGS7,A0A1P8BEB6,A0A1P8BGL4,A0A1P8BEB1,A0A1P8BEB2 Q9LT56_ARATH,Q8L6Y9_ARATH,Q9FM43_ARATH,Q9FGS7_ARATH,A0A1P8BEB6_ARATH,A0A1P8BGL4_ARATH,A0A1P8BEB1_ARATH,A0A1P8BEB2_ARATH AT3g27560/MMJ24_11 (Nearly identical to protein kinase ATN1) (Protein kinase superfamily protein),Protein kinase ATN1-like protein (Protein kinase superfamily protein),Protein kinase ATN1 (Protein kinase like protein) (Protein kinase superfamily protein),At5g50180 (Protein kinase ATN1-like protein) (Protein kinase superfamily protein),Protein kinase superfamily protein 40096,37589,39661,38969,31906,40276,31098,28704 AT3g27560/MMJ24_11 (Nearly identical to protein kinase ATN1) (Protein kinase superfamily protein),Protein kinase ATN1-like protein (Protein kinase superfamily protein),Protein kinase ATN1 (Protein kinase like protein) (Protein kinase superfamily protein),At5g50180 (Protein kinase ATN1-like protein) (Protein kinase superfamily protein),Protein kinase superfamily protein mitochondrion [GO:0005739]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; root epidermal cell differentiation [GO:0010053],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2091423;,locus:2180992;,locus:2168778;,locus:2157717; AT3G27560,AT5G01850,AT5G40540,AT5G50180 serine threonine-protein kinase HT1-like Os03g0816100 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J033124F12, full insert sequence),Os02g0594100 protein Q10BI9,Q6ZH81 Q10BI9_ORYSJ,Q6ZH81_ORYSJ LOC_Os03g60150 Os03g0816100 OSNPB_030816100,Os02g0594100 OJ1067_B01.11 OsJ_07350 OSNPB_020594100 ENOG411DR56 Q9ASV5 Q9ASV5_ARATH AT4g39690/T19P19_80 (MICOS complex subunit) (Uncharacterized protein At4g39690) 70553 AT4g39690/T19P19_80 (MICOS complex subunit) (Uncharacterized protein At4g39690) inner mitochondrial membrane protein complex [GO:0098800]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; cardiolipin binding [GO:1901612]; regulation of membrane lipid distribution [GO:0097035] locus:2135267; AT4G39690 Mitochondrial inner membrane protein Os04g0636600 protein (Fragment),Os04g0636600 protein A0A0P0WFA0,A0A0P0WFK3 A0A0P0WFA0_ORYSJ,A0A0P0WFK3_ORYSJ Os04g0636600 OSNPB_040636600 ENOG411DR51 TFCC Q9SMR2 TBCC_ARATH Tubulin-folding cofactor C (AtTFCC) (TFC C) (Protein PORCINO) DISRUPTION PHENOTYPE: Disturbed microtubule organization. Lethal embryos that consist of one or a few grossly enlarged cells that lack microtubules but not actin filaments. Failure to localize KNOLLE in mitotic cells. Cortical microtubules-free interphase cells and mitotic nuclei missing spindles. Reduced trichome size with fewer branches. {ECO:0000269|PubMed:11959844, ECO:0000269|PubMed:12225668}. Embryo defective; Preglobular; Enlarged embryo cells and endosperm nuclei-U. Mayer-2002 FUNCTION: Essential tubulin-folding protein involved in the final step of the tubulin folding pathway. Required for continuous microtubule cytoskeleton organization, mitotic division, cytokinesis, and to couple cell cycle progression to cell division in embryos and endosperms. Not essential for cell viability. Binds probably to the multimeric supercomplex, stimulating GTP hydrolysis by the bound beta-tubulin and the release of the alpha-/beta-tubulin heterodimer. {ECO:0000269|PubMed:10099932, ECO:0000269|PubMed:11959844, ECO:0000269|PubMed:12225668}. MISCELLANEOUS: Belongs to the PILZ group of genes that disrupt, when mutated, the microtubule cytoskeleton and produce mushroom-shaped ('pilz' in German) embryos. 38309 Tubulin-folding cofactor C (AtTFCC) (TFC C) (Protein PORCINO) cytoplasm [GO:0005737]; tubulin binding [GO:0015631]; microtubule cytoskeleton organization [GO:0000226]; post-chaperonin tubulin folding pathway [GO:0007023]; protein folding [GO:0006457]; tubulin complex assembly [GO:0007021] TISSUE SPECIFICITY: Ubiquitously expressed (at protein level). Present in leaves, roots, flowers, and stems. {ECO:0000269|PubMed:11959844, ECO:0000269|PubMed:12225668}. locus:2140089; AT4G39920 Tubulin binding cofactor C Os02g0557000 protein (Putative tubulin folding cofactor C) (cDNA clone:001-116-B05, full insert sequence) Q6YVY3 Q6YVY3_ORYSJ Os02g0557000 OJ1008_F08.25 OSJNBb0038F20.1 OSNPB_020557000 ENOG411DR50 4CL1,4CL2 Q42524,Q9S725,A0A1I9LR43,A8MS69 4CL1_ARATH,4CL2_ARATH,A0A1I9LR43_ARATH,A8MS69_ARATH 4-coumarate--CoA ligase 1 (4CL 1) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 1) (At4CL1) (4-coumaroyl-CoA synthase 1),4-coumarate--CoA ligase 2 (4CL 2) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 2) (At4CL2) (4-coumaroyl-CoA synthase 2),4-coumarate:CoA ligase 2,4-coumarate:CoA ligase 1 FUNCTION: Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics. PATHWAY: Phytoalexin biosynthesis; 3,4',5-trihydroxystilbene biosynthesis; 3,4',5-trihydroxystilbene from trans-4-coumarate: step 1/2. ARA:AT1G51680-MONOMER;MetaCyc:AT1G51680-MONOMER;,ARA:AT3G21240-MONOMER;MetaCyc:AT3G21240-MONOMER; 6.2.1.12; 6.2.1.12 61053,60842,53789,58546 4-coumarate--CoA ligase 1 (4CL 1) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 1) (At4CL1) (4-coumaroyl-CoA synthase 1),4-coumarate--CoA ligase 2 (4CL 2) (EC 6.2.1.12) (4-coumarate--CoA ligase isoform 2) (At4CL2) (4-coumaroyl-CoA synthase 2),4-coumarate:CoA ligase 2,4-coumarate:CoA ligase 1 cytoplasm [GO:0005737]; 4-coumarate-CoA ligase activity [GO:0016207]; ATP binding [GO:0005524]; phenylpropanoid metabolic process [GO:0009698],4-coumarate-CoA ligase activity [GO:0016207]; ATP binding [GO:0005524]; phenylpropanoid metabolic process [GO:0009698],ligase activity [GO:0016874]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Preferentially expressed in roots, bolting stems and siliques. Also detected in leaves. {ECO:0000269|PubMed:10417722, ECO:0000269|PubMed:15677481}.,TISSUE SPECIFICITY: Preferentially expressed in roots. {ECO:0000269|PubMed:10417722}. locus:2017602;,locus:2094716; AT1G51680,AT3G21240 4-coumarate-coa ligase Probable 4-coumarate--CoA ligase 4 (4CL 4) (Os4CL4) (EC 6.2.1.12) (4-coumaroyl-CoA synthase 4),Probable 4-coumarate--CoA ligase 3 (4CL 3) (Os4CL3) (EC 6.2.1.12) (4-coumaroyl-CoA synthase 3),Os02g0177600 protein (Fragment) Q67W82,Q6ETN3,A0A0P0VFD3 4CL4_ORYSJ,4CL3_ORYSJ,A0A0P0VFD3_ORYSJ 4CL4 Os06g0656500 LOC_Os06g44620 P0460H04.31-1 P0460H04.31-2,4CL3 Os02g0177600 LOC_Os02g08100 OsJ_005431 P0504A05.24,Os02g0177600 OSNPB_020177600 ENOG411DR52 PYRD P32746 PYRD_ARATH Dihydroorotate dehydrogenase (quinone), mitochondrial (DHOdehase) (EC 1.3.5.2) (Dihydroorotate oxidase) FUNCTION: Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor. PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; orotate from (S)-dihydroorotate (quinone route): step 1/1. ARA:AT5G23300-MONOMER;MetaCyc:AT5G23300-MONOMER; R-ATH-500753; 1.3.5.2; 1.3.5.2 48547 Dihydroorotate dehydrogenase (quinone), mitochondrial (DHOdehase) (EC 1.3.5.2) (Dihydroorotate oxidase) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; dihydroorotate dehydrogenase activity [GO:0004152]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; 'de novo' UMP biosynthetic process [GO:0044205]; pyrimidine ribonucleotide biosynthetic process [GO:0009220] locus:2166943; AT5G23300 Dihydroorotate dehydrogenase Dihydroorotate dehydrogenase (quinone), mitochondrial (DHOdehase) (EC 1.3.5.2) (Dihydroorotate oxidase) Q7XKC8 PYRD_ORYSJ PYRD Os04g0676300 LOC_Os04g57950 OsJ_16613 OSJNBa0064G10.3 FUNCTION: Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor. {ECO:0000250}. ENOG411DR58 MQK4.2 Q9FFF3,F4KCR6,F4KCR7,F4KCR8 Q9FFF3_ARATH,F4KCR6_ARATH,F4KCR7_ARATH,F4KCR8_ARATH Low density lipoprotein B-like protein (Vps51/Vps67 family (Components of vesicular transport) protein),Vps51/Vps67 family (Components of vesicular transport) protein R-ATH-6807878;R-ATH-6811438; 118802,114963,114865,114984 Low density lipoprotein B-like protein (Vps51/Vps67 family (Components of vesicular transport) protein),Vps51/Vps67 family (Components of vesicular transport) protein cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi transport complex [GO:0017119]; intra-Golgi vesicle-mediated transport [GO:0006891],Golgi transport complex [GO:0017119]; intra-Golgi vesicle-mediated transport [GO:0006891] locus:2171302; AT5G16300 Conserved oligomeric Golgi complex subunit Os01g0777000 protein A0A0P0V8W3 A0A0P0V8W3_ORYSJ Os01g0777000 OSNPB_010777000 ENOG411DS2N Q94A56 Q94A56_ARATH AT4g39470/F23K16_100 (Tetratricopeptide repeat (TPR)-like superfamily protein) 39156 AT4g39470/F23K16_100 (Tetratricopeptide repeat (TPR)-like superfamily protein) locus:2122462; AT4G39470 chloroplast lumen common family protein Os05g0182100 protein (Unknow protein) (cDNA clone:001-206-C01, full insert sequence) (cDNA clone:J023079N14, full insert sequence) Q5KQJ2 Q5KQJ2_ORYSJ Os05g0182100 OSNPB_050182100 P0453H11.15 ENOG411DY76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine-rich repeat receptor-like protein kinase Os01g0711200 protein (Receptor protein kinase-like),Os02g0267766 protein Q9ASD8,A0A0P0VHD2 Q9ASD8_ORYSJ,A0A0P0VHD2_ORYSJ Os01g0711200 Os01g0711200 B1142C05.3 OSNPB_010711200 P0456F08.28,Os02g0267766 OSNPB_020267766 ENOG411DY72 GATL8,GATL9 O48684,O04536 GATL8_ARATH,GATL9_ARATH Probable galacturonosyltransferase-like 8 (EC 2.4.1.-) (Like glycosyl transferase 9),Probable galacturonosyltransferase-like 9 (EC 2.4.1.-) (Like glycosyl transferase 8) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 43989,44259 Probable galacturonosyltransferase-like 8 (EC 2.4.1.-) (Like glycosyl transferase 9),Probable galacturonosyltransferase-like 9 (EC 2.4.1.-) (Like glycosyl transferase 8) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489]; polysaccharide biosynthetic process [GO:0000271] locus:2032357;,locus:2020638; AT1G24170,AT1G70090 galacturonosyltransferase-like 9-like Hexosyltransferase (EC 2.4.1.-) (Fragment),Hexosyltransferase (EC 2.4.1.-) Q0DD76,Q6Z5N7 Q0DD76_ORYSJ,Q6Z5N7_ORYSJ Os06g0247000 Os06g0247000 OSNPB_060247000,Os02g0739400 Os02g0739400 OSNPB_020739400 P0684F11.21 ENOG411DSB5 F4JTD2 F4JTD2_ARATH Putative rRNA methyltransferase (EC 2.1.1.-) (2'-O-ribose RNA methyltransferase SPB1 homolog) FUNCTION: Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. {ECO:0000256|HAMAP-Rule:MF_03163}. 2.1.1.- 92267 Putative rRNA methyltransferase (EC 2.1.1.-) (2'-O-ribose RNA methyltransferase SPB1 homolog) nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; rRNA (guanine) methyltransferase activity [GO:0016435]; rRNA (uridine-2'-O-)-methyltransferase activity [GO:0008650]; enzyme-directed rRNA 2'-O-methylation [GO:0000453]; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000466]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; rRNA methylation [GO:0031167] locus:2117487; AT4G25730 AdoMet-dependent rRNA methyltransferase Putative rRNA methyltransferase (EC 2.1.1.-) (2'-O-ribose RNA methyltransferase SPB1 homolog),Os09g0445100 protein (Fragment) Q0DFV9,A0A0P0XMV1 Q0DFV9_ORYSJ,A0A0P0XMV1_ORYSJ Os05g0567400 Os05g0567400 OSNPB_050567400,Os09g0445100 OSNPB_090445100 FUNCTION: Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. {ECO:0000256|HAMAP-Rule:MF_03163}. ENOG411DY7G NUC,MGP Q9FFH3,Q9ZWA6,A0A1P8BBS4 IDD8_ARATH,IDD3_ARATH,A0A1P8BBS4_ARATH Zinc finger protein NUTCRACKER (Protein indeterminate-domain 8),Zinc finger protein MAGPIE (Protein indeterminate-domain 3),C2H2-like zinc finger protein DISRUPTION PHENOTYPE: Delayed flowering. {ECO:0000269|PubMed:21265895}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21265895}. Late flowering-C. Park-2011 FUNCTION: Transcription factor that binds to the DNA sequence 5'-CTTTTGTCC-3'. Regulates photoperiodic flowering by modulating sugar transport and metabolism. Regulates SUS1 and SUS4. {ECO:0000269|PubMed:21265895}.,FUNCTION: Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527). Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722}. MISCELLANEOUS: MGP expression is SHR- and SCR-dependent. 51189,55826,47170 Zinc finger protein NUTCRACKER (Protein indeterminate-domain 8),Zinc finger protein MAGPIE (Protein indeterminate-domain 3),C2H2-like zinc finger protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; asymmetric cell division [GO:0008356]; leaf senescence [GO:0010150]; photoperiodism, flowering [GO:0048573]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; asymmetric cell division [GO:0008356]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}. TISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. {ECO:0000269|PubMed:21265895, ECO:0000305|PubMed:21265895}.,TISSUE SPECIFICITY: Expressed in the ground tissue and stele cells of embryos and 2-days post-germination roots but not in the quiescent center. Detected only in cells that perform asymmetric cell divisions. {ECO:0000269|PubMed:17785527}. locus:2167608;,locus:2024193; AT5G44160,AT1G03840 Zinc finger protein Os01g0242200 protein (Putative zinc finger protein ID1) Q5NA81 Q5NA81_ORYSJ Os01g0242200 B1066G12.13 OSNPB_010242200 ENOG411DY7C PSBP1,PSBP2 Q42029,O49344 PSBP1_ARATH,PSBP2_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (23 kDa thylakoid membrane protein) (OEC 23 kDa subunit) (OEC23),Putative oxygen-evolving enhancer protein 2-2 (OEE2) FUNCTION: May be involved in the regulation of photosystem II. 28095,13443 Oxygen-evolving enhancer protein 2-1, chloroplastic (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (23 kDa thylakoid membrane protein) (OEC 23 kDa subunit) (OEC23),Putative oxygen-evolving enhancer protein 2-2 (OEE2) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; poly(U) RNA binding [GO:0008266]; protein domain specific binding [GO:0019904]; defense response to bacterium [GO:0042742]; photosynthesis, light reaction [GO:0019684],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2033087;,locus:2054482; AT1G06680,AT2G30790 Oxygen-evolving enhancer protein 2 Os07g0141400 protein (Probable photosystem II oxygen-evolving complex protein 2) (cDNA clone:001-038-B02, full insert sequence) (cDNA clone:J013002J02, full insert sequence) Q8GTK4 Q8GTK4_ORYSJ OJ1351_C05.112 Os07g0141400 OsJ_23049 OSNPB_070141400 ENOG411DY7Z F11C1_70,LRR-RLK Q93Y06,Q9SNE4,Q9FMI2,A0A1I9LQ53 Y5720_ARATH,Q9SNE4_ARATH,Q9FMI2_ARATH,A0A1I9LQ53_ARATH Probable inactive receptor kinase At5g67200,Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor protein kinase-like protein),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor kinase-like protein),Leucine-rich repeat protein kinase family protein 74006,72761,73926,74156 Probable inactive receptor kinase At5g67200,Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor protein kinase-like protein),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Receptor kinase-like protein),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2155508;,locus:2074830;,locus:2167781; AT5G67200,AT3G50230,AT5G43020 inactive receptor kinase OSJNBb0059K02.5 protein (Os04g0649700 protein) (cDNA clone:J023004B22, full insert sequence),Os04g0649700 protein (Fragment) Q7XMQ6,A0A0P0WFW7,A0A0P0WFL8,A0A0P0WFL0 Q7XMQ6_ORYSJ,A0A0P0WFW7_ORYSJ,A0A0P0WFL8_ORYSJ,A0A0P0WFL0_ORYSJ Os04g0649700 Os04g0649700 OSJNBb0059K02.5 OSNPB_040649700,Os04g0649700 OSNPB_040649700 ENOG411DY7T Q9FRR2 Q9FRR2_ARATH At1g08760 (F22O13.25) (GPI-anchored adhesin-like protein, putative (DUF936)) (Uncharacterized protein At1g08760) 80749 At1g08760 (F22O13.25) (GPI-anchored adhesin-like protein, putative (DUF936)) (Uncharacterized protein At1g08760) locus:2025605; AT1G08760 expressed protein Os09g0516700 protein (cDNA clone:J023121E21, full insert sequence),Os08g0541500 protein Q0J0C7,Q6ZIT8 Q0J0C7_ORYSJ,Q6ZIT8_ORYSJ Os09g0516700 Os09g0516700 OSNPB_090516700,Os08g0541500 Os08g0541500 OJ1211_G06.22 OSNPB_080541500 ENOG411E9DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleolar GTP-binding protein 1 (NOG1) NA NA NA NA NA NA NA ENOG411E1NA ndhD P26288,A0A1P8B2B4 NU4C_ARATH,A0A1P8B2B4_ARATH NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4),NADH-plastoquinone oxidoreductase subunit ARA:ATCG01050-MONOMER; 1.6.5.- 56228,10621 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4),NADH-plastoquinone oxidoreductase subunit chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038]; ATP synthesis coupled electron transport [GO:0042773],NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773] ATCG01050 NADH dehydrogenase subunit 4 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) P0C325 NU4C_ORYSJ ndhD Nip169 ENOG411E1NB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q69QL3 Q69QL3_ORYSJ OSJNBa0024L18.29 Os07g0156467 Os07g0157000 OSNPB_070156467 OSNPB_070157000 ENOG411E1NC GRF5 Q8L8A6 GRF5_ARATH Growth-regulating factor 5 (AtGRF5) (Transcription activator GRF5) DISRUPTION PHENOTYPE: Small and narrow leaves. {ECO:0000269|PubMed:15960617}. FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. 44696 Growth-regulating factor 5 (AtGRF5) (Transcription activator GRF5) nucleus [GO:0005634]; ATP binding [GO:0005524]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15960617}. locus:2088272; AT3G13960 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides Growth-regulating factor 1 (OsGRF1) (Transcription activator GRF1),Os02g0776900 protein (Fragment),Os04g0125800 protein (Fragment),Os03g0441700 protein (Fragment) Q6AWY8,A0A0N7KG68,A0A0P0W685,A0A0P0VZX2 GRF1_ORYSJ,A0A0N7KG68_ORYSJ,A0A0P0W685_ORYSJ,A0A0P0VZX2_ORYSJ GRF1 Os02g0776900 LOC_Os02g53690 OJ1534_E09.5 OsJ_08584 OSJNBb0013K01.39,Os02g0776900 OSNPB_020776900,Os04g0125800 OSNPB_040125800,Os03g0441700 OSNPB_030441700 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411E1ND FAX3 Q9ZVH7 FAX3_ARATH Protein FATTY ACID EXPORT 3, chloroplastic (At-FAX3) FUNCTION: May be involved in free fatty acids export from the plastids. {ECO:0000250|UniProtKB:Q93V66}. MISCELLANEOUS: For all TMEM14 proteins, 4 hydrophobic alpha-helical domains are predicted. However, NMR structure determination of the human TMEM14A showed that only 3 of these helices are membrane-spaning while the amphiphilic N-terminal helix is probably located at the lipid micelle-water interface. {ECO:0000305|PubMed:25646734}. 36701 Protein FATTY ACID EXPORT 3, chloroplastic (At-FAX3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536] DEVELOPMENTAL STAGE: Highly expressed during seed development and germination. {ECO:0000305|PubMed:25646734}. locus:2064206; AT2G38550 non-green plastid inner envelope membrane protein Os01g0821700 protein (Putative non-green plastid inner envelope membrane protein) Q5QM65 Q5QM65_ORYSJ Os01g0821700 OSNPB_010821700 P0485B12.14 P0703B11.23 ENOG411E1NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: interactor of constitutive active rops NA NA NA NA NA NA NA ENOG411E1NG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KNOX1 domain Putative homeobox protein knotted-1-like 5,Homeobox protein knotted-1-like 4 (Homeobox protein OSH10),Homeobox protein knotted-1-like 9,Homeobox protein knotted-1-like 8 (Homeobox protein OSH43),Os03g0673000 protein (Fragment),Os03g0772100 protein (Fragment),Os03g0673500 protein Q75LX9,Q75LX7,Q10EC6,Q10ED2,A0A0P0W1A5,A0A0P0W446,A0A0P0W174 KNOS5_ORYSJ,KNOS4_ORYSJ,KNOS9_ORYSJ,KNOS8_ORYSJ,A0A0P0W1A5_ORYSJ,A0A0P0W446_ORYSJ,A0A0P0W174_ORYSJ Os03g0673500 LOC_Os03g47036/LOC_Os03g47042 OsJ_011587 OSJNBa0035I24.10,OSH10 Os03g0673000 Os03g0673100 LOC_Os03g47016/LOC_Os03g47022 OsJ_011583/OsJ_011584 OSJNBa0035I24.12 OSJNBb0113I20.24,Os03g0772100 LOC_Os03g56140 OsJ_012214 OSJNBb0094O03.2,OSH43 Os03g0771500 LOC_Os03g56110 OSJNBa0072F13.3,Os03g0673000 OSNPB_030673000,Os03g0772100 OSNPB_030772100,Os03g0673500 OSNPB_030673500 FUNCTION: Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}. ENOG411E1NH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional activator that binds specifically to the DNA sequence 5'- AG CCGAC-3'. Binding to the C-repeat DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt cold and drought stress (By similarity) Dehydration-responsive element-binding protein 1I (Protein DREB1I),Dehydration-responsive element-binding protein 1A (Protein DREB1A) (Protein C-repeat-binding factor 3) (rCBF3) Q0J3Y6,Q64MA1 DRE1I_ORYSJ,DRE1A_ORYSJ DREB1I ERF29 Os08g0545500 LOC_Os08g43210 OJ1323_A06.8 P0623F08.41,DREB1A CBF3 ERF24 Os09g0522200 LOC_Os09g35030 OSJNOa273B05.11 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.,FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:12609047, ECO:0000269|PubMed:16284406}. ENOG411E1NI Q9SII1 Q9SII1_ARATH Plant calmodulin-binding protein-like protein (Uncharacterized protein At2g38800) 69025 Plant calmodulin-binding protein-like protein (Uncharacterized protein At2g38800) calmodulin binding [GO:0005516] locus:2040379; AT2G38800 Plant calmodulin-binding domain Os05g0381700 protein (Fragment),Os05g0381700 protein,Os05g0381600 protein (Fragment) A0A0P0WLS6,A0A0P0WLP5,A0A0P0WLV7 A0A0P0WLS6_ORYSJ,A0A0P0WLP5_ORYSJ,A0A0P0WLV7_ORYSJ Os05g0381700 OSNPB_050381700,Os05g0381600 OSNPB_050381600 ENOG411E1NJ RTNLB12 Q9M392 RTNLL_ARATH Reticulon-like protein B12 (AtRTNLB12) 23053 Reticulon-like protein B12 (AtRTNLB12) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2080315; AT3G54120 Reticulon-like protein Reticulon-like protein Q5N7A0 Q5N7A0_ORYSJ Os01g0851300 OsJ_04095 OSNPB_010851300 P0529H11.29 ENOG411E1NK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase Os05g0564100 protein (cDNA clone:002-188-A05, full insert sequence) Q6AUG1 Q6AUG1_ORYSJ Os05g0564100 OSJNBb0053D02.10 OSNPB_050564100 ENOG411E1NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os03g0569800 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J023045J04, full insert sequence) Q10HZ9 Q10HZ9_ORYSJ Os03g0569800 LOC_Os03g37260 OsJ_11489 OSNPB_030569800 ENOG411E1NN Q9CA70,Q9M9U3 Q9CA70_ARATH,Q9M9U3_ARATH ER membrane protein, putative (DUF962) (Uncharacterized protein F1M20.12),At1g18720/F6A14_17 (ER membrane protein, putative (DUF962)) (F6A14.17 protein) 23445,23134 ER membrane protein, putative (DUF962) (Uncharacterized protein F1M20.12),At1g18720/F6A14_17 (ER membrane protein, putative (DUF962)) (F6A14.17 protein) integral component of membrane [GO:0016021] locus:2019135;,locus:2034975; AT1G74440,AT1G18720 Protein of unknown function (DUF962) Os10g0407200 protein (YGL010w, putative, expressed),Os02g0578800 protein (YGL010w-like protein) (cDNA clone:J023040N16, full insert sequence) Q338F7,Q6EP55 Q338F7_ORYSJ,Q6EP55_ORYSJ Os10g0407200 LOC_Os10g26700 Os10g0407200 OSNPB_100407200,Os02g0578800 B1267B06.7 OsJ_07258 OSNPB_020578800 ENOG411E1NP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1NQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1635) NA NA NA NA NA NA NA ENOG411E1NR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA thioredoxin reductase NA NA NA NA NA NA NA ENOG411E1NS Q9ZUA9 Y2181_ARATH PHD finger protein At2g01810 79480 PHD finger protein At2g01810 nucleus [GO:0005634]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2065388; AT2G01810 PHD finger NA NA NA NA NA NA NA ENOG411E1NT RBK1 Q8H1D6,A0A1R7T399,F4KI00 RBK1_ARATH,A0A1R7T399_ARATH,F4KI00_ARATH Receptor-like cytosolic serine/threonine-protein kinase RBK1 (EC 2.7.11.1) (Protein ROP BINDING PROTEIN KINASES 1),ROP binding protein kinases 1,Protein kinase superfamily protein 2.7.11.1 52652,41934,51551 Receptor-like cytosolic serine/threonine-protein kinase RBK1 (EC 2.7.11.1) (Protein ROP BINDING PROTEIN KINASES 1),ROP binding protein kinases 1,Protein kinase superfamily protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; endomembrane system [GO:0012505]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; GTPase binding [GO:0051020]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; cellular response to ethylene stimulus [GO:0071369]; defense response, incompatible interaction [GO:0009814]; protein phosphorylation [GO:0006468]; response to parasitic fungus [GO:0009623],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],cell periphery [GO:0071944]; nucleoplasm [GO:0005654]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response to fungus [GO:0050832]; protein autophosphorylation [GO:0046777]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Mostly expressed in vasculature, hydathode endothem, leaf mesophyll cells and trichomes. {ECO:0000269|PubMed:18088316}. locus:2142514;,locus:2155700; AT5G10520,AT5G65530 receptor-like cytosolic serine threonine-protein kinase RBK1-like (RAP Annotation release2) Protein kinase-like domain containing protein (Os06g0663900 protein) (Putative receptor protein kinase PERK1),Os06g0663900 protein (Receptor protein kinase PERK1-like) (cDNA clone:J023111J08, full insert sequence),Os06g0663900 protein (Putative receptor protein kinase PERK1),Os06g0663900 protein (Fragment) Q653Y9,Q653Y8,Q653Y7,A0A0P0X009 Q653Y9_ORYSJ,Q653Y8_ORYSJ,Q653Y7_ORYSJ,A0A0P0X009_ORYSJ Os06g0663900 OsJ_22271 OSJNBb0065C04.50-1 OSNPB_060663900,Os06g0663900 OSJNBb0065C04.50-3 OSNPB_060663900,OSJNBb0065C04.50-2 Os06g0663900 OSNPB_060663900,Os06g0663900 OSNPB_060663900 ENOG411E1NU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E1NV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLASP N terminal Os02g0816300 protein,Os02g0816300 protein (Fragment) Q0DWG3,A0A0P0VRI8,A0A0P0VR67 Q0DWG3_ORYSJ,A0A0P0VRI8_ORYSJ,A0A0P0VR67_ORYSJ Os02g0816300 Os02g0816300 OSNPB_020816300,Os02g0816300 OSNPB_020816300 ENOG411E1NW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os01g0550800 protein (Putative ZmEBE-1 protein) (cDNA clone:002-104-D02, full insert sequence),Os06g0278000 protein,Os01g0973100 protein,Os01g0550900 protein (Fragment) Q5JK80,A0A0P0WVJ8,A0A0N7KEH6,A0A0P0V3Z1 Q5JK80_ORYSJ,A0A0P0WVJ8_ORYSJ,A0A0N7KEH6_ORYSJ,A0A0P0V3Z1_ORYSJ Os01g0550800 OSJNBa0024F24.27 OSNPB_010550800,Os06g0278000 OSNPB_060278000,Os01g0973100 OSNPB_010973100,Os01g0550900 OSNPB_010550900 ENOG411E1NX BHLH154,BHLH153 Q7XJU1,Q7XJU2,A0A1P8AVK1,A0A1P8AVJ7 BH154_ARATH,BH153_ARATH,A0A1P8AVK1_ARATH,A0A1P8AVJ7_ARATH Transcription factor bHLH154 (BHLH transcription factor beta) (bHLH beta) (Basic helix-loop-helix protein 154) (AtbHLH154) (bHLH 154) (bHLH transcription factor bHLH154),Transcription factor bHLH153 (BHLH transcription factor alpha) (bHLH alpha) (Basic helix-loop-helix protein 153) (AtbHLH153) (bHLH 153) (bHLH transcription factor bHLH153),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 17254,16611,18085,15717 Transcription factor bHLH154 (BHLH transcription factor beta) (bHLH beta) (Basic helix-loop-helix protein 154) (AtbHLH154) (bHLH 154) (bHLH transcription factor bHLH154),Transcription factor bHLH153 (BHLH transcription factor alpha) (bHLH alpha) (Basic helix-loop-helix protein 153) (AtbHLH153) (bHLH 153) (bHLH transcription factor bHLH153),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; response to gibberellin [GO:0009739]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2045263; AT2G31730,AT1G05710 Ethylene-responsive protein OJ990528_30.9 protein (OSJNBb0091E11.4 protein) (Os04g0493100 protein) (cDNA clone:001-025-C01, full insert sequence) (cDNA clone:J033055B08, full insert sequence) Q7X7U7 Q7X7U7_ORYSJ Os04g0493100 Os04g0493100 OJ990528_30.9 OsJ_15304 OSJNBb0091E11.4 OSNPB_040493100 ENOG411E1NY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0559200 protein Q653S6 Q653S6_ORYSJ Os09g0559200 OJ1065_E04.15 OSNPB_090559200 ENOG411E1NZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA wall-associated receptor kinase-like 14-like NA NA NA NA NA NA NA ENOG411E1N0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YABBY protein Protein YABBY 2 (OsYABBY2) (OsYAB2) (Protein FILAMENTOUS FLOWER 2) Q10FZ7 YAB2_ORYSJ YAB2 FIL2 Os03g0650000 LOC_Os03g44710 ENOG411E1N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA indole-3-acetic acid-amido synthetase Probable indole-3-acetic acid-amido synthetase GH3.6 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 6) (OsGH3-6),Os05g0143800 protein (Fragment) Q60EY1,A0A0N7KK49 GH36_ORYSJ,A0A0N7KK49_ORYSJ GH3.6 Os05g0143800 LOC_Os05g05180 OJ1607_F09.5,Os05g0143800 OSNPB_050143800 FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ENOG411E1N2 Q9FGV5 Q9FGV5_ARATH 40S ribosomal protein S27 82237 40S ribosomal protein S27 ribosome [GO:0005840] locus:2152778; AT5G47940 NA Os07g0569000 protein Q7XII5 Q7XII5_ORYSJ Os07g0569000 Os07g0569000 OJ1019_E02.8 OsJ_24799 OSNPB_070569000 ENOG411E1N3 TIFY6B,TIFY6A,JAZ3,JAZ4 Q9LVI4,Q58G47,F4J6F9,B3H630,B3H4G3,A8MR24 TIF6B_ARATH,TIF6A_ARATH,F4J6F9_ARATH,B3H630_ARATH,B3H4G3_ARATH,A8MR24_ARATH Protein TIFY 6B (Jasmonate ZIM domain-containing protein 3) (Protein JASMONATE INSENSITIVE 3),Protein TIFY 6A (Jasmonate ZIM domain-containing protein 4),Jasmonate-zim-domain protein 3,Jasmonate-zim-domain protein 4 FUNCTION: Repressor of jasmonate responses. Jasmonoyl-isoleucine (JA-Ile) specifically promotes COI1-TIFY6B/JAZ3 interaction. Acts as a negative regulator of MYC2 function. Feed-back regulated by MYC2. {ECO:0000269|PubMed:17637675, ECO:0000269|PubMed:17637677, ECO:0000269|PubMed:19151223, ECO:0000269|PubMed:21335373}.,FUNCTION: Repressor of jasmonate responses. {ECO:0000269|PubMed:19151223}. 37746,33632,34168,26750,29997,36550 Protein TIFY 6B (Jasmonate ZIM domain-containing protein 3) (Protein JASMONATE INSENSITIVE 3),Protein TIFY 6A (Jasmonate ZIM domain-containing protein 4),Jasmonate-zim-domain protein 3,Jasmonate-zim-domain protein 4 nucleus [GO:0005634]; identical protein binding [GO:0042802]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; jasmonic acid mediated signaling pathway [GO:0009867]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Srtongly expressed in root tips. {ECO:0000269|PubMed:17499004}. locus:2088530;,locus:2198018; AT3G17860,AT1G48500 TIFY 6B-like Protein TIFY 6b (OsTIFY6b) (Jasmonate ZIM domain-containing protein 4) (OsJAZ4) (OsJAZ8),Os09g0401300 protein,Os09g0401300 protein (Fragment) Q6ES51,Q6ES49,A0A0P0XMF5 TIF6B_ORYSJ,Q6ES49_ORYSJ,A0A0P0XMF5_ORYSJ TIFY6B JAZ4 Os09g0401300 LOC_Os09g23660 OsJ_29291 P0650H04.35-1,P0650H04.35-3 Os09g0401300 OSNPB_090401300,Os09g0401300 OSNPB_090401300 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411E1N4 UGT71D2,UGT71D1 O82385,O82383 U71D2_ARATH,U71D1_ARATH UDP-glycosyltransferase 71D2 (EC 2.4.1.-),UDP-glycosyltransferase 71D1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71D1) (EC 2.4.1.91) FUNCTION: Possesses quercetin 3-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}. ARA:AT2G29710-MONOMER; 2.4.1.-,2.4.1.-; 2.4.1.91 52076,53000 UDP-glycosyltransferase 71D2 (EC 2.4.1.-),UDP-glycosyltransferase 71D1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71D1) (EC 2.4.1.91) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2060599;,locus:2060679; AT2G29710,AT2G29730 UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E1N5 Q8GYG8 Q8GYG8_ARATH Ferredoxin-like protein (Uncharacterized protein At1g02180/T6A9_2) 24788 Ferredoxin-like protein (Uncharacterized protein At1g02180/T6A9_2) locus:2204803; AT1G02180 NA Ferredoxin-like (Os02g0834300 protein) (cDNA clone:002-157-F01, full insert sequence) Q6EP30 Q6EP30_ORYSJ Os02g0834300 Os02g0834300 OJ1282_E10.26 OsJ_09022 OSNPB_020834300 P0264G11.5 ENOG411E1N6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein BREVIS RADIX Putative protein Brevis radix-like 3 (OsBRXL3),Protein Brevis radix-like 2 (OsBRXL2) Q7XPT0,Q6ZIK7 BRXL3_ORYSJ,BRXL2_ORYSJ BRXL3 Os04g0600500 LOC_Os04g51172 OSJNBa0083N12.14,BRXL2 Os02g0700700 LOC_Os02g47230 OJ1111_E07.14 OsJ_08053 ENOG411E1N7 A0A1P8B557,F4JN47,F4K4C2 A0A1P8B557_ARATH,F4JN47_ARATH,F4K4C2_ARATH Pectin lyase-like superfamily protein 30590,42122,49650 Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2128023;,locus:2146370; AT4G35670,AT5G27530 glycoside hydrolase family 28 protein NA NA NA NA NA NA NA ENOG411E1N8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amb_all Pectate lyase (EC 4.2.2.2) Q0DJF3 Q0DJF3_ORYSJ Os05g0293500 Os05g0293500 OsJ_17924 OSNPB_050293500 ENOG411E1N9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Integral membrane protein, putative, expressed (Os10g0479700 protein) (Putative phosphate translocator) (cDNA clone:J033126D12, full insert sequence),Os10g0479700 protein (Fragment) Q9AV45,A0A0P0XVT8 Q9AV45_ORYSJ,A0A0P0XVT8_ORYSJ Os10g0479700 LOC_Os10g33920 Os10g0479700 OsJ_31909 OSJNBa0093B11.4 OSNPB_100479700,Os10g0479700 OSNPB_100479700 ENOG411E6J0 DFC Q9LX15 DFC_ARATH Protein DOWNSTREAM OF FLC (AtDFC) (Pollen allergen-like protein) reduced FLC mRNA early flowering FUNCTION: Part of a three-gene cluster containing FLC, UFC and DFC, which is coordinately regulated in response to vernalization. Not regulated by FLX. {ECO:0000269|PubMed:15186749, ECO:0000269|PubMed:18156133}. 17819 Protein DOWNSTREAM OF FLC (AtDFC) (Pollen allergen-like protein) extracellular space [GO:0005615] locus:2184103; AT5G10130 pollen Ole e 1 allergen and extensin family protein NA NA NA NA NA NA NA ENOG411DYW8 Q9LK58 PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150 60630 Pentatricopeptide repeat-containing protein At3g13150 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2090014; AT3G13150 PPR repeat NA NA NA NA NA NA NA ENOG411DYW9 RH32 Q9FFT9 RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 (EC 3.6.4.13) 3.6.4.13 83582 DEAD-box ATP-dependent RNA helicase 32 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2160225; AT5G54910 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 32 (EC 3.6.4.13),Os07g0517000 protein (Fragment) Q0D622,A0A0P0X6B6 RH32_ORYSJ,A0A0P0X6B6_ORYSJ Os07g0517000 LOC_Os07g33340 OSJNBa0036M16.110 P0650C03.25,Os07g0517000 OSNPB_070517000 ENOG411DYW4 LECRKS6 Q9FHX3 LRKS6_ARATH L-type lectin-domain containing receptor kinase S.6 (LecRK-S.6) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici and to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}. 2.7.11.1 76556 L-type lectin-domain containing receptor kinase S.6 (LecRK-S.6) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229] locus:2165740; AT5G42120 L-type lectin-domain containing receptor kinase Os02g0459600 protein A0A0P0VIP0 A0A0P0VIP0_ORYSJ Os02g0459600 OSNPB_020459600 ENOG411DYW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os12g0614250 protein,Os06g0576800 protein,Os01g0693600 protein,Os01g0545800 protein B9GEA2,A0A0P0WY14,A0A0P0V6X8,A0A0P0V3R8 B9GEA2_ORYSJ,A0A0P0WY14_ORYSJ,A0A0P0V6X8_ORYSJ,A0A0P0V3R8_ORYSJ Os12g0614250 OsJ_36866 OSNPB_120614250,Os06g0576800 OSNPB_060576800,Os01g0693600 OSNPB_010693600,Os01g0545800 OSNPB_010545800 ENOG411DYW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfite exporter TauE/SafE NA NA NA NA NA NA NA ENOG411DYW2 SPPL1 Q93Z32 SIPL1_ARATH Signal peptide peptidase-like 1 (AtSPPL1) (EC 3.4.23.-) FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. {ECO:0000250}. 3.4.23.- 41002 Signal peptide peptidase-like 1 (AtSPPL1) (EC 3.4.23.-) endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; trans-Golgi network [GO:0005802]; aspartic-type endopeptidase activity [GO:0004190] DEVELOPMENTAL STAGE: Expressed in the shoot meristem and root epidermal cells in germinating seeds. {ECO:0000269|PubMed:18067581}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18067581}. locus:2119236; AT4G33410 signal peptide peptidase-like Signal peptide peptidase-like 1 (OsSPPL1) (EC 3.4.23.-) Q7G7C7 SIPL1_ORYSJ SPPL1 Os10g0393100 LOC_Os10g25360 OsJ_31401 OSJNBa0011L09.25 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. {ECO:0000250}. ENOG411DYW3 RABA2C,RABA2B,RABA2D Q96283,Q9LNW1,Q9FIF9,Q9SUG1,A0A1P8B9N4 RAA2C_ARATH,RAA2B_ARATH,RAA2D_ARATH,Q9SUG1_ARATH,A0A1P8B9N4_ARATH Ras-related protein RABA2c (AtRABA2c) (Ras-related protein Rab11A) (AtRab11A),Ras-related protein RABA2b (AtRABA2b),Ras-related protein RABA2d (AtRABA2d),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Rab-like protein),RAB GTPase homolog A2D FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-5620916;R-ATH-8873719; 23849,23689,23816,14272,18054 Ras-related protein RABA2c (AtRABA2c) (Ras-related protein Rab11A) (AtRab11A),Ras-related protein RABA2b (AtRABA2b),Ras-related protein RABA2d (AtRABA2d),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Rab-like protein),RAB GTPase homolog A2D cell plate [GO:0009504]; cytosol [GO:0005829]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],cell plate [GO:0009504]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031],GTP binding [GO:0005525]; GTPase activity [GO:0003924] TISSUE SPECIFICITY: Expressed in root tips. {ECO:0000269|PubMed:18239134}. locus:2102777;,locus:2024992;,locus:2168469;,locus:2132502; AT3G46830,AT1G07410,AT5G59150,AT4G08190 RAB Os03g0823700 protein (Ras-related GTP-binding protein) (Ras-related protein Rab11A, putative, expressed) (cDNA clone:006-303-B12, full insert sequence) Q852B4 Q852B4_ORYSJ OSJNBb0081B07.10 LOC_Os03g60870 Os03g0823700 OsJ_13172 OSNPB_030823700 ENOG411DYWM MCA23.11 Q9FIK2 Q9FIK2_ARATH At5g47790/MCA23_11 (SMAD/FHA domain-containing protein) FUNCTION: Inhibitor of protein-phosphatase 1 (PP1). Binds to and inhibits PP1 activity. {ECO:0000250|UniProtKB:Q9LTK0}. 39985 At5g47790/MCA23_11 (SMAD/FHA domain-containing protein) nuclear speck [GO:0016607]; mRNA binding [GO:0003729]; protein serine/threonine phosphatase inhibitor activity [GO:0004865]; negative regulation of protein dephosphorylation [GO:0035308] locus:2160872; AT5G47790 Nuclear inhibitor of protein Nuclear inhibitor of PP1-like (Os08g0326100 protein) Q8H4Y5 Q8H4Y5_ORYSJ OJ1136_A10.104 Os08g0326100 OsJ_26889 OSNPB_080326100 P0703C03.39 ENOG411DYWN MQB2.8 Q56XD6,A0A1P8BGU2,Q9FM17,F4K7T1,F4K7S9 Q56XD6_ARATH,A0A1P8BGU2_ARATH,Q9FM17_ARATH,F4K7T1_ARATH,F4K7S9_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (ZAP-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to nuclear protein ZAP) 42753,43587,72205,74208,71847 P-loop containing nucleoside triphosphate hydrolases superfamily protein (ZAP-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to nuclear protein ZAP) nucleus [GO:0005634]; hydrolase activity [GO:0016787] locus:2170728; AT5G62760 nuclear protein Os02g0215000 protein Q0E2T9 Q0E2T9_ORYSJ Os02g0215000 Os02g0215000 OSNPB_020215000 ENOG411DYWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase Os02g0511400 protein (Putative steroleosin) (cDNA clone:001-134-A10, full insert sequence),Os02g0511100 protein Q6K785,A0A0P0VJG9 Q6K785_ORYSJ,A0A0P0VJG9_ORYSJ Os02g0511400 Os02g0511400 OSJNBa0001A11.16 OSNPB_020511400,Os02g0511100 OSNPB_020511100 ENOG411DYWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA respiratory burst oxidase homolog protein NA NA NA NA NA NA NA ENOG411DYWJ Q9FZJ4 Q9FZJ4_ARATH DNA repair metallo-beta-lactamase family protein (F17L21.20) (Uncharacterized protein At1g27420) (Uncharacterized protein At1g27420; F17L21.21) 47763 DNA repair metallo-beta-lactamase family protein (F17L21.20) (Uncharacterized protein At1g27420) (Uncharacterized protein At1g27420; F17L21.21) locus:2015939; AT1G27410 DNA repair metallo-beta-lactamase Os01g0783400 protein Q0JIR1 Q0JIR1_ORYSJ Os01g0783400 Os01g0783400 OSNPB_010783400 ENOG411DYWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os01g0536400 protein (Putative 2-oxoglutarate-dependent oxygenase) (cDNA, clone: J100072E06, full insert sequence) Q8GSY5 Q8GSY5_ORYSJ Os01g0536400 OSJNBa0086A10.24 OSNPB_010536400 ENOG411DYWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Polycomb group ring finger Os03g0798200 protein (Zinc finger, C3HC4 type family protein, expressed) Q10C16 Q10C16_ORYSJ Os03g0798200 LOC_Os03g58390 Os03g0798200 OsJ_12964 OSNPB_030798200 ENOG411DYWE AGO4,AGO6,AGO9,AGO8 Q9ZVD5,O48771,Q84VQ0,Q3E984,A0A1P8BDI0 AGO4_ARATH,AGO6_ARATH,AGO9_ARATH,AGO8_ARATH,A0A1P8BDI0_ARATH Protein argonaute 4 (Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11),Protein argonaute 6,Protein argonaute 9,Protein argonaute 8,PAZ domain-containing protein / piwi domain-containing protein DISRUPTION PHENOTYPE: Decreased DNA cytosine methylation at CpNpG and asymmetric positions at different DNA loci corresponding to retroelements, transposons and repetitive DNA sequences (PubMed:12522258, PubMed:17993621, PubMed:21738482). Reduced H3K9me2 at IGN5 and IGN26 loci (PubMed:21738482). {ECO:0000269|PubMed:12522258, ECO:0000269|PubMed:17993621, ECO:0000269|PubMed:21738482}.,DISRUPTION PHENOTYPE: Differentiation of multiple gametic cells able to initiate gametogenesis. Abnormally enlarged sub-epidermal cells in developing ovules. {ECO:0000269|PubMed:20208518}. Substantial decreases in DNA methylation at CpNpG and asymmetric sites but not at CpG sites with respect to the single mutants alone.,Almost two-fold reduction in CpNpG and four-fold reduction in asymmetric methylation at the AtSN1 locus but not the 5S rDNA repeat. Reduced accumulation of endogenous heterochromatin-related siRNAs.,A proportion of pre-meiotic ovules have two MMCs and have several abnormally enlarged sub-epidermal cells.Plants are fertile and show no signs of ovule or seed abortion. Decreased DNA methylation-J. Zhu-2007,Abnormal ovule morphology (no effect on fertility); Homozygotes are viable: Increased percentage of abnormal ovules-J. Vielle-Calzada-2010 FUNCTION: Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci (PubMed:21738482). Component of the RISC complex that associate with the small interfering RNA (siRNA) pathway involved in direct cytosine methylation at endogenous DNA repeats. Forms a AGO4/NRPE1/siRNA complex in cajal body, facilitating its function in RNA-directed gene silencing of target loci. Required for CpNpG and asymmetric DNA methylation as well as histone H3 'Lys-9' methylation (H3K9me) at SUP and SN1 loci. May be not required for CpG methylation. Required for the production and maintenance of retrotransposon SN1 and Copia and ribosomal 5S 25 nucleotide siRNAs specialized in gene silencing at chromatin level. Involved in de novo methylation of FWA gene and required for the maintenance of RNA-directed DNA methylation (RdDM) triggered by inverted repeat transgenes. Interacts with miRNA miR390 and miR172, targeting respectively TAS3 and AP2 mRNAs, and mediates cleavage of miRNA targets. Associates mainly with small RNAs of 24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal adenosine. Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO4 function in RNA silencing. Required for resistance to the bacterial pathogen P.syringae. Works independently of the RdDM pathway in mediating resistance to P.syringae. RdDM is involved in viral genome methylation as an epigenetic defense against geminiviruses (PubMed:12522258, PubMed:14988555, PubMed:15242620, PubMed:16839878, PubMed:16839879, PubMed:16998468, PubMed:17869110, PubMed:17938239, PubMed:17993621, PubMed:18342361, PubMed:18596098, PubMed:19377477, PubMed:20173091). {ECO:0000269|PubMed:12522258, ECO:0000269|PubMed:14988555, ECO:0000269|PubMed:15242620, ECO:0000269|PubMed:16839878, ECO:0000269|PubMed:16839879, ECO:0000269|PubMed:16998468, ECO:0000269|PubMed:17869110, ECO:0000269|PubMed:17938239, ECO:0000269|PubMed:17993621, ECO:0000269|PubMed:18342361, ECO:0000269|PubMed:18596098, ECO:0000269|PubMed:19377477, ECO:0000269|PubMed:20173091, ECO:0000269|PubMed:21738482}.,FUNCTION: Involved in transcriptional gene silencing (TGS). Component of the RISC complex that associate with the small interfering RNA (siRNA) pathway involved in direct cytosine methylation at endogenous DNA repeats. Required for the accumulation of specific siRNAs derived from transgene and heterochromatin-related endogenous loci. Involved in RNA-directed DNA methylation (RdDM) at specific endogenous loci. Probably not required for the accumulation of siRNAs derived from transgene inverted repeats that induce post-transcriptional gene silencing (PTGS). Associates mainly with small RNAs of 24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal adenosine. Targeted by turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO6 function in RNA silencing. {ECO:0000269|PubMed:17332757, ECO:0000269|PubMed:17869110, ECO:0000269|PubMed:20173091}.,FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates preferentially with small RNAs of 24 nucleotide in length with a 5' terminal adenosine. Interacts with 24 nucleotide sRNAs derived from transposable elements (TEs). Required to silence pericentrometric-located TEs in female gametes and their accessory cells. Necessary to inactivate a significant proportion of long terminal repeat retrotransposons (LTRs) in the ovule. Required to specify cell fate in ovule. Involved in the control of female gamete formation by restricting the specification of gametophyte precursors in a dosage-dependent, non-cell-autonomous manner. Targeted by turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO9 function in RNA silencing. {ECO:0000269|PubMed:17869110, ECO:0000269|PubMed:20173091, ECO:0000269|PubMed:20208518, ECO:0000269|PubMed:21057207}.,FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression (By similarity). {ECO:0000250}. 102840,98681,100524,95507,96030 Protein argonaute 4 (Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11),Protein argonaute 6,Protein argonaute 9,Protein argonaute 8,PAZ domain-containing protein / piwi domain-containing protein Cajal body [GO:0015030]; intracellular ribonucleoprotein complex [GO:0030529]; nuclear euchromatin [GO:0005719]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; chromatin binding [GO:0003682]; endoribonuclease activity [GO:0004521]; miRNA binding [GO:0035198]; siRNA binding [GO:0035197]; chromatin silencing [GO:0006342]; chromatin silencing by small RNA [GO:0031048]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to virus [GO:0051607]; DNA methylation [GO:0006306]; gene silencing [GO:0016458]; histone H3-K9 methylation [GO:0051567]; modulation by virus of host morphology or physiology [GO:0019048]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; production of siRNA involved in RNA interference [GO:0030422]; regulation of translation [GO:0006417]; RNA-directed DNA methylation [GO:0080188]; transcription, DNA-templated [GO:0006351],intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; siRNA binding [GO:0035197]; chromatin silencing [GO:0006342]; defense response to virus [GO:0051607]; DNA methylation [GO:0006306]; production of siRNA involved in RNA interference [GO:0030422]; regulation of translation [GO:0006417]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; siRNA binding [GO:0035197]; defense response to virus [GO:0051607]; gene silencing by RNA [GO:0031047]; megasporocyte differentiation [GO:1904159]; megasporogenesis [GO:0009554]; negative regulation of transposition [GO:0010529]; plant ovule development [GO:0048481]; regulation of transcription, DNA-templated [GO:0006355]; regulation of translation [GO:0006417]; transcription, DNA-templated [GO:0006351],intracellular ribonucleoprotein complex [GO:0030529]; RNA binding [GO:0003723]; gene silencing by RNA [GO:0031047]; regulation of transcription, DNA-templated [GO:0006355]; regulation of translation [GO:0006417]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676]; gene silencing by RNA [GO:0031047] DEVELOPMENTAL STAGE: Expressed in all cells of the young ovule primordium at pre-meiotic stages, including the L1 layer. At early stages of female gametogenesis, expression is restricted to the distal (micropylar) portion of the developing ovule, but is absent from the 1-nuclear female gametophyte. In fully differentiated ovules, expressed at the proximal and distal poles but not in the female gametophyte. {ECO:0000269|PubMed:20208518}. TISSUE SPECIFICITY: Expressed in embryos, mature leaves, vascular tissue of the sepals, stamens and stigma, at the tip of the style and siliques. {ECO:0000269|PubMed:20173091}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons and shoot meristematic region. {ECO:0000269|PubMed:17332757, ECO:0000269|PubMed:20173091}.,TISSUE SPECIFICITY: Expressed in embryonic shoot apex region, pollen and developing ovules. {ECO:0000269|PubMed:20173091}. locus:2059258;,locus:2059370;,locus:2179008;,locus:2147072; AT2G27040,AT2G32940,AT5G21150,AT5G21030 Argonaute Protein argonaute 15 (OsAGO15),Protein argonaute 4B (OsAGO4b),Protein argonaute 16 (OsAGO16) (OsAGO6) (Protein ZWILLE/PINHEAD-like 1),Protein argonaute 4A (OsAGO4a),Os04g0151800 protein (Fragment),Os01g0275200 protein Q5NBN9,Q0JF58,Q6YSJ5,Q9SDG8,A0A0P0W6M1,A0A0P0V142,A0A0P0W6U0 AGO15_ORYSJ,AGO4B_ORYSJ,AGO16_ORYSJ,AGO4A_ORYSJ,A0A0P0W6M1_ORYSJ,A0A0P0V142_ORYSJ,A0A0P0W6U0_ORYSJ AGO15 Os01g0275200/Os01g0275300 LOC_Os01g16850/LOC_Os01g16860 P0038F12.10,AGO4B Os04g0151800 LOC_Os04g06770 OsJ_13701,AGO16 ZP1 Os07g0265600 LOC_Os07g16224 B1059D01.1 B1100H02.17,AGO4A Os01g0275600 LOC_Os01g16870 P0038F12.13,Os04g0151800 OSNPB_040151800,Os01g0275200 OSNPB_010275200 FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411DYWF DMP4,DMP6 Q8L928,Q9FNL3 DMP4_ARATH,DMP6_ARATH Protein DMP4 (AtDMP4),Protein DMP6 (AtDMP6) FUNCTION: Involved in membrane remodeling. {ECO:0000250|UniProtKB:Q9LVF4}. 23468,23629 Protein DMP4 (AtDMP4),Protein DMP6 (AtDMP6) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; abscission [GO:0009838]; endomembrane system organization [GO:0010256]; plant organ senescence [GO:0090693],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; endomembrane system organization [GO:0010256] DEVELOPMENTAL STAGE: Accumulates in tissues undergoing senescence and abscission. {ECO:0000269|PubMed:20712629}. TISSUE SPECIFICITY: Expressed in leaves, flowers and siliques, especially in vascular tissues. {ECO:0000269|PubMed:20712629}.,TISSUE SPECIFICITY: Expressed constitutively in leaves, stems, flowers, siliques and roots (e.g. root hairs). {ECO:0000269|PubMed:20712629}. locus:505006493;,locus:2161393; AT4G18425,AT5G46090 Protein of unknown function (DUF679) NA NA NA NA NA NA NA ENOG411DYWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) F-box protein family-like (Os08g0449100 protein),F-box protein family-like (Os08g0449700 protein) Q6ZCS3,Q6ZLE2 Q6ZCS3_ORYSJ,Q6ZLE2_ORYSJ Os08g0449100 OJ1005_H01.4 OsJ_27515 OSNPB_080449100 P0409A07.32,Os08g0449700 OJ1005_H01.15 OsJ_27518 OSNPB_080449700 ENOG411DYWB UGT72B3,UGT72B1,UGT72B2,GT72B1 Q9LNI1,Q9M156,Q8W4C2,A0A1P8AV09,A0A1P8AUD8,F4JHS0 U72B3_ARATH,U72B1_ARATH,U72B2_ARATH,A0A1P8AV09_ARATH,A0A1P8AUD8_ARATH,F4JHS0_ARATH UDP-glycosyltransferase 72B3 (EC 2.4.1.-),UDP-glycosyltransferase 72B1 (EC 2.4.1.-) (Arbutin synthase) (Probable hydroquinone glucosyltransferase) (EC 2.4.1.218),UDP-glycosyltransferase 72B2 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. {ECO:0000269|PubMed:15860014}. FUNCTION: Possesses low quercetin 3-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}.,FUNCTION: Bifunctional O-glycosyltransferase and N-glycosyltransferase that can detoxify xenobiotics. Possesses high activity to metabolize the persistent pollutants 2,4,5-trichlorophenol (TCP) and 3,4-dichloroaniline (DCA). Also active on benzoates and benzoate derivatives in vitro. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15860014, ECO:0000269|PubMed:18077347}. ARA:AT1G01390-MONOMER; 2.4.1.-,2.4.1.-; 2.4.1.218 52784,52930,52672,54728,53172,38684 UDP-glycosyltransferase 72B3 (EC 2.4.1.-),UDP-glycosyltransferase 72B1 (EC 2.4.1.-) (Arbutin synthase) (Probable hydroquinone glucosyltransferase) (EC 2.4.1.218),UDP-glycosyltransferase 72B2 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein endoplasmic reticulum [GO:0005783]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; hydroquinone glucosyltransferase activity [GO:0050505]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; UDP-glycosyltransferase activity [GO:0008194]; lignin biosynthetic process [GO:0009809]; response to salt stress [GO:0009651]; response to toxic substance [GO:0009636]; xenobiotic catabolic process [GO:0042178]; xenobiotic metabolic process [GO:0006805],endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2035332;,locus:2125023;,locus:2035272; AT1G01420,AT4G01070,AT1G01390 Hydroquinone Glycosyltransferase (EC 2.4.1.-) Q2R1N0 Q2R1N0_ORYSJ Os11g0599200 LOC_Os11g38650 Os11g0599200 OsJ_34441 OSNPB_110599200 ENOG411DYWC HSP23.6,HSP23.5 Q96331,Q9FGM9 HS23M_ARATH,HS235_ARATH 23.6 kDa heat shock protein, mitochondrial (AtHsp23.6),23.5 kDa heat shock protein, mitochondrial (AtHsp23.5) 23610,23468 23.6 kDa heat shock protein, mitochondrial (AtHsp23.6),23.5 kDa heat shock protein, mitochondrial (AtHsp23.5) mitochondrion [GO:0005739]; response to cadmium ion [GO:0046686],mitochondrion [GO:0005739] locus:2122649;,locus:2163670; AT4G25200,AT5G51440 Heat Shock Protein 24.1 kDa heat shock protein, mitochondrial (OsHsp24.1) Q6Z7V2 HS24M_ORYSJ HSP24.1 Os02g0758000 LOC_Os02g52150 OsJ_08454 P0471A11.32 ENOG411DYWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (By similarity) Auxin-responsive protein IAA5 (Indoleacetic acid-induced protein 5) Q0JKG7 IAA5_ORYSJ IAA5 IAA8 Os01g0675700 LOC_Os01g48444 OJ1117_G01.13 OsJ_002894 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411DYWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aspartic proteinase Os07g0533800 protein Q0D5V1 Q0D5V1_ORYSJ Os07g0533800 Os07g0533800 OSNPB_070533800 ENOG411DYWZ TT1 Q8VWG3 TT1_ARATH Protein TRANSPARENT TESTA 1 (TTL1) (WIP-domain protein 1) (Zinc finger protein TT1) DISRUPTION PHENOTYPE: Lack of flavanoid pigment accumulation in the seed coat endothelium (transparent testa phenotype). {ECO:0000269|PubMed:21477081}. Early flowering compared to wild type.,No visible phenotype.,The initiation of abaxial trichomes occurs marginally earlier than those of wild type Ler.,Much reduced fertility compared to wild type Ler.,Reduced pollen levels than wild type Ler and filaments shorter than carpels.,Stems are 35% taller than that of wild type Ler. Yellow seed coat-B. Weisshaar-2002 FUNCTION: May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. 34512 Protein TRANSPARENT TESTA 1 (TTL1) (WIP-domain protein 1) (Zinc finger protein TT1) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flavonoid biosynthetic process [GO:0009813]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}. TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}. locus:2008386; AT1G34790 transparent testa NA NA NA NA NA NA NA ENOG411DYWT BAM9 Q8VYW2 BAM9_ARATH Inactive beta-amylase 9 (1,4-alpha-D-glucan maltohydrolase) (Inactive beta-amylase 3) 58281 Inactive beta-amylase 9 (1,4-alpha-D-glucan maltohydrolase) (Inactive beta-amylase 3) cytoplasm [GO:0005737]; beta-amylase activity [GO:0016161]; polysaccharide catabolic process [GO:0000272] TISSUE SPECIFICITY: Mostly expressed in young floral buds, flowers and roots, and, to a later extent, in stems and leaves. {ECO:0000269|Ref.1}. locus:2180029; AT5G18670 beta-amylase Beta-amylase (EC 3.2.1.2) A0A0P0XA34 A0A0P0XA34_ORYSJ Os07g0667100 OSNPB_070667100 ENOG411DYWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoside transporter Os07g0557400 protein (cDNA clone:J013001M14, full insert sequence) Q0D5J2 Q0D5J2_ORYSJ Os07g0557400 Os07g0557400 OsJ_24713 OSNPB_070557400 ENOG411DYWV Q9SUS0,Q8VYG3,Q9SZ90,A0A1I9LLR3 GUN20_ARATH,GUN16_ARATH,GUN18_ARATH,A0A1I9LLR3_ARATH Endoglucanase 20 (EC 3.2.1.4) (Endo-1,4-beta glucanase 20),Endoglucanase 16 (EC 3.2.1.4) (Endo-1,4-beta glucanase 16),Endoglucanase 18 (EC 3.2.1.4) (Endo-1,4-beta glucanase 18),Glycosyl hydrolase 9B9 protein ARA:AT4G23560-MONOMER;,ARA:AT3G43860-MONOMER;,ARA:AT4G09740-MONOMER; 3.2.1.4 52450,54120,52514,13389 Endoglucanase 20 (EC 3.2.1.4) (Endo-1,4-beta glucanase 20),Endoglucanase 16 (EC 3.2.1.4) (Endo-1,4-beta glucanase 16),Endoglucanase 18 (EC 3.2.1.4) (Endo-1,4-beta glucanase 18),Glycosyl hydrolase 9B9 protein extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2128394;,locus:2101099;,locus:2118519; AT4G23560,AT3G43860,AT4G09740 Glycosyl hydrolase Endoglucanase 8 (EC 3.2.1.4) (Endo-1,4-beta glucanase 8),Endoglucanase 20 (EC 3.2.1.4) (Endo-1,4-beta glucanase 20) (OsGLU15) Q6K7G9,Q6ZA06 GUN8_ORYSJ,GUN20_ORYSJ Os02g0778600 LOC_Os02g53820 OJ1293_A01.6 OsJ_008299,GLU15 Os08g0387400 LOC_Os08g29770 P0434E03.25 ENOG411DYWW PBL26 Q9SFT7 PBL26_ARATH Probable serine/threonine-protein kinase PBL26 (EC 2.7.11.1) (PBS1-like protein 26) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 46067 Probable serine/threonine-protein kinase PBL26 (EC 2.7.11.1) (PBS1-like protein 26) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2098580; AT3G07070 serine threonine-protein kinase Os05g0125400 protein,Os05g0125300 protein Q75IN0,Q6L4L1 Q75IN0_ORYSJ,Q6L4L1_ORYSJ Os05g0125400 OsJ_16965 OSJNBb0079L11.7 OSNPB_050125400 P0683F12.1,Os05g0125300 Os05g0125300 OsJ_16964 OSJNBb0079L11.6 OSNPB_050125300 ENOG411DYWQ O64850,A0A1P8B0Q8 O64850_ARATH,A0A1P8B0Q8_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g26200),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 63773,40615 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g26200),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2057756; AT2G26200 Putative methyltransferase Os03g0143000 protein A0A0P0VT00 A0A0P0VT00_ORYSJ Os03g0143000 OSNPB_030143000 ENOG411DYWS BGAL10 Q9FN08 BGA10_ARATH Beta-galactosidase 10 (Lactase 10) (EC 3.2.1.23) ARA:AT5G63810-MONOMER; 3.2.1.23 83102 Beta-galactosidase 10 (Lactase 10) (EC 3.2.1.23) apoplast [GO:0048046]; cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16267099, ECO:0000269|PubMed:17466346}. locus:2163951; AT5G63810 beta-galactosidase Beta-galactosidase 3 (Lactase 3) (EC 3.2.1.23),Os01g0875500 protein (cDNA clone:J033105C09, full insert sequence),Os01g0875500 protein (Fragment) Q5N8X6,B7ETJ0,A0A0P0VB08 BGAL3_ORYSJ,B7ETJ0_ORYSJ,A0A0P0VB08_ORYSJ Os01g0875500 LOC_Os01g65460 P0648C09.21 P0698A10.24,Os01g0875500 OSNPB_010875500 ENOG411EGSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MORN NA NA NA NA NA NA NA ENOG411EGSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA M-phase phosphoprotein 6 NA NA NA NA NA NA NA ENOG411EGSR HIPP15 Q9CAK6,Q9CAK7,A0A1P8ASA8,A0A1P8AWS2 HIP15_ARATH,Q9CAK7_ARATH,A0A1P8ASA8_ARATH,A0A1P8AWS2_ARATH Heavy metal-associated isoprenylated plant protein 15 (AtHIP15),Copper transport protein family (Uncharacterized protein T12P18.2),Copper transport protein family,Heavy metal transport/detoxification superfamily protein FUNCTION: Probable heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 13153,11747,16439,13541 Heavy metal-associated isoprenylated plant protein 15 (AtHIP15),Copper transport protein family (Uncharacterized protein T12P18.2),Copper transport protein family,Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed in embryo sacs. {ECO:0000269|PubMed:16299181}. locus:2195493;,locus:2195473; AT1G63950,AT1G63960 Inherit from KOG: Heavy metal-associated domain containing protein NA NA NA NA NA NA NA ENOG411EGSU Q9LXV1 Q9LXV1_ARATH At5g12880 (Proline-rich family protein) (Uncharacterized protein T24H18_50) 8305 At5g12880 (Proline-rich family protein) (Uncharacterized protein T24H18_50) locus:2182290; AT5G12880 NA NA NA NA NA NA NA NA ENOG411EGST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EGSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EGSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cAMP-regulated phosphoprotein/endosulfine conserved region NA NA NA NA NA NA NA ENOG411EGSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Sec-independent protein translocase protein (TatC) NA NA NA NA NA NA NA ENOG411EGSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EGSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSK A8MS77 A8MS77_ARATH Plant thionin family protein 7533 Plant thionin family protein integral component of membrane [GO:0016021] locus:4010713807; AT3G44718 NA NA NA NA NA NA NA NA ENOG411EGSJ Q9LVK8,A0A1I9LQ26 Q9LVK8_ARATH,A0A1I9LQ26_ARATH Uncharacterized protein At3g13910,Uncharacterized protein 11581,13173 Uncharacterized protein At3g13910,Uncharacterized protein plasma membrane [GO:0005886] locus:2088227; AT3G13910 Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411EGSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA at4g19360 (e NA NA NA NA NA NA NA ENOG411EGS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein NA NA NA NA NA NA NA ENOG411EGS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411EGS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Conserved hypothetical protein NA NA NA NA NA NA NA ENOG411EGS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein NA NA NA NA NA NA NA ENOG411EGS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os04g0114700 protein A0A0P0W6C4 A0A0P0W6C4_ORYSJ Os04g0114700 OSNPB_040114700 ENOG411EGS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0618801 protein Q6K946 Q6K946_ORYSJ Os02g0618801 OJ1014_H03.30 OJ1212_C01.16 OsJ_07551 OSNPB_020618801 ENOG411EJQ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: udp-glucose glycoprotein glucosyltransferase NA NA NA NA NA NA NA ENOG411EJQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M1 BRI1-KD interacting protein 120 (Os09g0410300 protein),Os09g0410125 protein (Fragment),Os09g0409950 protein (Fragment) Q69NE0,A0A0P0XLI9,A0A0P0XM51 Q69NE0_ORYSJ,A0A0P0XLI9_ORYSJ,A0A0P0XM51_ORYSJ Os09g0410300 Os09g0410300 OJ1585_D02.24 OSNPB_090410300,Os09g0410125 OSNPB_090410125,Os09g0409950 OSNPB_090409950 ENOG411EJQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine hydrolase (FSH1) Os07g0687100 protein (cDNA clone:J013075J07, full insert sequence),Os07g0687100 protein Q8LIG3,Q0D3G9 Q8LIG3_ORYSJ,Q0D3G9_ORYSJ OJ1200_C08.123 OJ1150_E04.119 Os07g0687100 OsJ_25642 OSNPB_070687100,Os07g0687100 Os07g0687100 OSNPB_070687100 ENOG411DSUA RPE Q9SAU2 Q9SAU2_ARATH D-ribulose-5-phosphate-3-epimerase (Putative ribulose-5-phosphate-3-epimerase) (Ribulose-5-phosphate-3-epimerase) (EC 5.1.3.1) Embryo defective; Cotyledon-D. Meinke-2002 ARA:AT5G61410-MONOMER; 5.1.3.1 30009 D-ribulose-5-phosphate-3-epimerase (Putative ribulose-5-phosphate-3-epimerase) (Ribulose-5-phosphate-3-epimerase) (EC 5.1.3.1) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; stromule [GO:0010319]; thylakoid [GO:0009579]; metal ion binding [GO:0046872]; ribulose-phosphate 3-epimerase activity [GO:0004750]; cellular carbohydrate metabolic process [GO:0044262]; pentose catabolic process [GO:0019323]; pentose-phosphate shunt, non-oxidative branch [GO:0009052]; response to cold [GO:0009409]; response to nematode [GO:0009624] locus:2163228; AT5G61410 ribulose-phosphate 3-epimerase Ribulose-phosphate 3-epimerase, chloroplastic (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) (RPE) Q9ZTP5 RPE_ORYSJ RPE RPE2 Os03g0169100 LOC_Os03g07300 OsJ_09567 OSJNBa0091P11.10 FUNCTION: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. ENOG411DSUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411DSUC AO1 O23349 AO1_ARATH Primary amine oxidase 1 (AtAO1) (EC 1.4.3.21) DISRUPTION PHENOTYPE: Impaired sensitivity to jasmonic acid (MeJA). {ECO:0000269|PubMed:25883242}. FUNCTION: Oxidizes preferentially the aliphatic diamine putrescine with production of the corresponding aldehyde, ammonia and hydrogen peroxide. May be involved in the regulation of developmental programmed cell death (PCD) in both vascular tissue and the root cap (PubMed:9681017). Required for jasmonic acid-(MeJA) mediated early protoxylem differentiation associated with putrescine levels reduction and H(2)O(2) accumulation in roots (PubMed:25883242). {ECO:0000269|PubMed:25883242, ECO:0000269|PubMed:9681017}. ARA:AT4G14940-MONOMER;MetaCyc:AT4G14940-MONOMER; R-ATH-211945;R-ATH-6798695; 1.4.3.21 73783 Primary amine oxidase 1 (AtAO1) (EC 1.4.3.21) cell wall [GO:0005618]; extracellular region [GO:0005576]; aliphatic-amine oxidase activity [GO:0052595]; aminoacetone:oxygen oxidoreductase(deaminating) activity [GO:0052594]; copper ion binding [GO:0005507]; phenethylamine:oxygen oxidoreductase (deaminating) activity [GO:0052596]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; tryptamine:oxygen oxidoreductase (deaminating) activity [GO:0052593]; amine metabolic process [GO:0009308]; jasmonic acid mediated signaling pathway [GO:0009867]; protoxylem development [GO:0090059]; regulation of programmed cell death [GO:0043067]; response to jasmonic acid [GO:0009753] DEVELOPMENTAL STAGE: Levels peak 3-4 days after germination. Expressed following temporally and spatially discrete patterns of gene expression in lateral root cap cells, vascular tissue of roots, developing leaves, the hypocotyl, and in the style/stigmatal tissue (PubMed:9681017). Expressed at the early stages of vascular tissue differentiation in roots; strong accumulation in the protoxylem at the transition, elongation, and maturation zones (PubMed:25883242). Accumulates in developing tracheary elements before lignification. Present in cells destined to undergo programmed cell death (PCD) in both vascular tissue and the root cap. In flowers, restricted spatial and temporal distribution; at stage 11-13, after papillae formation, accumulates in tracheary elements of style and stigmate (PubMed:9681017). {ECO:0000269|PubMed:25883242, ECO:0000269|PubMed:9681017}. TISSUE SPECIFICITY: Expressed in the vascular tissues at the division/differentiation transition zone. {ECO:0000269|PubMed:25883242}. locus:2129520; AT4G14940 amine oxidase NA NA NA NA NA NA NA ENOG411DSUD CAMRLK Q9FK63 CARLK_ARATH Calmodulin-binding receptor kinase CaMRLK (EC 2.7.11.1) (Calmodulin-binding receptor-like kinase) (AtCaMRLK) (Protein MATERNAL EFFECT EMBRYO ARREST 62) DISRUPTION PHENOTYPE: Endosperm development arrested at one-cell zygotic stage (PubMed:15634699). Increased resistance to auxin (e.g. IAA and NPA) and osmotic stress (e.g. mannitol) (PubMed:21431781). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:21431781}. FUNCTION: Can phosphorylate the myelin basic protein in vitro (PubMed:14720124). Required for endosperm development in embryos (PubMed:15634699). Maybe involved in auxin and osmotic stress responses (PubMed:21431781). {ECO:0000269|PubMed:14720124, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:21431781}. 2.7.11.1 73893 Calmodulin-binding receptor kinase CaMRLK (EC 2.7.11.1) (Calmodulin-binding receptor-like kinase) (AtCaMRLK) (Protein MATERNAL EFFECT EMBRYO ARREST 62) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; protein kinase activity [GO:0004672]; embryo development ending in seed dormancy [GO:0009793]; protein autophosphorylation [GO:0046777]; response to auxin [GO:0009733]; response to insect [GO:0009625]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Expressed in reproductive and vegetative tissues, with higher levels in seedlings and flowers, but not in leaves. {ECO:0000269|PubMed:14720124}. locus:2171988; AT5G45800 LRR receptor-like serine threonine-protein kinase Brassinosteroid LRR receptor kinase-like (Os02g0241100 protein),Os06g0544100 protein (cDNA, clone: J075193C19, full insert sequence) Q6ER42,B7F9F7 Q6ER42_ORYSJ,B7F9F7_ORYSJ Os02g0241100 Os02g0241100 OSJNBa0082C09.23 OSNPB_020241100,Os06g0544100 OSNPB_060544100 ENOG411DSUE Q944A2,Q93VA8 Q944A2_ARATH,Q93VA8_ARATH Alba DNA/RNA-binding protein (At1g20220) (At1g20220/T20H2_3),Alba DNA/RNA-binding protein (At1g76010/T4O12_22) 33763,37383 Alba DNA/RNA-binding protein (At1g20220) (At1g20220/T20H2_3),Alba DNA/RNA-binding protein (At1g76010/T4O12_22) cytosol [GO:0005829]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729],cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2198551;,locus:2204400; AT1G20220,AT1G76010 Alba NA NA NA NA NA NA NA ENOG411DSUF MXA21.22 Q9C9N8,A0A1R7T3G0,A0A1R7T3G1,F4KA45 Q9C9N8_ARATH,A0A1R7T3G0_ARATH,A0A1R7T3G1_ARATH,F4KA45_ARATH Class I glutamine amidotransferase-like superfamily protein (Uncharacterized protein F4N21_3),Class I glutamine amidotransferase-like superfamily protein 49439,40479,44546,49781 Class I glutamine amidotransferase-like superfamily protein (Uncharacterized protein F4N21_3),Class I glutamine amidotransferase-like superfamily protein hydrolase activity [GO:0016787]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541] locus:2033324;,locus:2176742; AT1G66860,AT5G38200 glutamine amidotransferase-like protein Os01g0138800 protein Q5ZC52 Q5ZC52_ORYSJ Os01g0138800 Os01g0138800 OSNPB_010138800 P0443D08.44 ENOG411DSUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 NA NA NA NA NA NA NA ENOG411DSUI SWEET6,SWEET7 Q9C9M9,Q8LBF7 SWET6_ARATH,SWET7_ARATH Bidirectional sugar transporter SWEET6 (AtSWEET6) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 6),Bidirectional sugar transporter SWEET7 (AtSWEET7) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 7) FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. R-ATH-189200; 28868,28531 Bidirectional sugar transporter SWEET6 (AtSWEET6) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 6),Bidirectional sugar transporter SWEET7 (AtSWEET7) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 7) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; sugar transmembrane transporter activity [GO:0051119]; carbohydrate transport [GO:0008643]; protein homooligomerization [GO:0051260],integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; sugar transmembrane transporter activity [GO:0051119]; carbohydrate transport [GO:0008643] locus:2033319;,locus:2123426; AT1G66770,AT4G10850 bidirectional sugar transporter NA NA NA NA NA NA NA ENOG411DSUJ SRG1 Q39224,Q9SB32,Q9SYM7,Q9SB33,A0A1P8ASK4,A0A1P8B881,F4I629,F4JSJ8 SRG1_ARATH,Q9SB32_ARATH,Q9SYM7_ARATH,Q9SB33_ARATH,A0A1P8ASK4_ARATH,A0A1P8B881_ARATH,F4I629_ARATH,F4JSJ8_ARATH Protein SRG1 (AtSRG1) (Protein SENESCENCE-RELATED GENE 1),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At4g25310) (SRG1-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative flavanone 3-hydroxylase) (T30F21.12 protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (SRG1-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein MISCELLANEOUS: Unlike the homologous protein NCS1 of Coptis japonica, SRG1 has no norcoclaurine synthase activity. ARA:AT1G17020-MONOMER;,ARA:AT4G25310-MONOMER;,ARA:AT1G78550-MONOMER;,ARA:AT4G25300-MONOMER; 41039,39933,41015,40409,32106,36822,41400,29652 Protein SRG1 (AtSRG1) (Protein SENESCENCE-RELATED GENE 1),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At4g25310) (SRG1-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative flavanone 3-hydroxylase) (T30F21.12 protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (SRG1-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [GO:0016682]; leaf senescence [GO:0010150],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] DEVELOPMENTAL STAGE: Highly induced during normal senescence. {ECO:0000269|PubMed:9414552}. TISSUE SPECIFICITY: Low expression in roots and leaves. {ECO:0000269|PubMed:9414552}. locus:2020407;,locus:2122679;,locus:2202980;,locus:2122669;,locus:2020422; AT1G17020,AT4G25310,AT1G78550,AT4G25300,AT1G17010 SRG1-like Os10g0559500 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (Putative ethylene-forming enzyme) (cDNA clone:J023138C05, full insert sequence),Os10g0558200 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (Putative dioxygenase),Os10g0559500 protein (Fragment),Os01g0351800 protein (Putative iron/ascorbate-dependent oxidoreductase) (cDNA clone:J033046K19, full insert sequence),Os01g0352100 protein (Putative ethylene-forming enzyme),Os03g0856000 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (Putative carboxylate oxidase) (cDNA clone:J023105N19, full insert sequence) Q7XC75,Q94LP9,Q0IVQ7,Q8S208,Q5ZAT3,Q75IP9 Q7XC75_ORYSJ,Q94LP9_ORYSJ,Q0IVQ7_ORYSJ,Q8S208_ORYSJ,Q5ZAT3_ORYSJ,Q75IP9_ORYSJ Os10g0559500 OSJNBa0042H09.19 LOC_Os10g41020 OSNPB_100559500,Os10g0558200 LOC_Os10g40880 Os10g0558200 OsJ_32434 OSJNBa0010C11.16 OSNPB_100558200,Os10g0559500 OSNPB_100559500,Os01g0351800 Os01g0351800 B1102E12.1 OsJ_01698 OSNPB_010351800 P0463A02.31,Os01g0352100 B1102E12.11 OsJ_01699 OSNPB_010352100,Os03g0856000 LOC_Os03g63900 Os03g0856000 Os03g63900 OSNPB_030856000 ENOG411DSUK GH3.1,GH3.3,GH3.2,GH3.4 O82333,O22190,Q9SZT9,Q9LQ68 GH31_ARATH,GH33_ARATH,GH32_ARATH,GH34_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 1) (AtGH3-1),Indole-3-acetic acid-amido synthetase GH3.3 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 3) (AtGH3-3),Indole-3-acetic acid-amido synthetase GH3.2 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 2) (AtGH3-2) (Protein YADOKARI 1),Indole-3-acetic acid-amido synthetase GH3.4 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 4) (AtGH3-4) (CF4-like protein) FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000269|PubMed:15659623}.,FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates. {ECO:0000269|PubMed:15659623}.,FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates. {ECO:0000269|PubMed:14756757, ECO:0000269|PubMed:15659623}. ARA:GQT-821-MONOMER;,ARA:AT2G23170-MONOMER;,ARA:AT4G37390-MONOMER;,ARA:AT1G59500-MONOMER;MetaCyc:AT1G59500-MONOMER; R-ATH-6798695; 6.3.2.- 66734,67537,61827,67046 Probable indole-3-acetic acid-amido synthetase GH3.1 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 1) (AtGH3-1),Indole-3-acetic acid-amido synthetase GH3.3 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 3) (AtGH3-3),Indole-3-acetic acid-amido synthetase GH3.2 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 2) (AtGH3-2) (Protein YADOKARI 1),Indole-3-acetic acid-amido synthetase GH3.4 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 4) (AtGH3-4) (CF4-like protein) ligase activity [GO:0016874]; response to auxin [GO:0009733],indole-3-acetic acid amido synthetase activity [GO:0010279]; auxin homeostasis [GO:0010252],indole-3-acetic acid amido synthetase activity [GO:0010279]; auxin homeostasis [GO:0010252]; response to auxin [GO:0009733] TISSUE SPECIFICITY: Expressed in flowers, pollen, cotyledons, stipules, true leaves, hypocotyls, and all parts of the roots except for the primary root tips. {ECO:0000269|PubMed:14756757}. locus:2060500;,locus:2058588;,locus:2126362;,locus:2202832; AT2G14960,AT2G23170,AT4G37390,AT1G59500 Indole-3-acetic acid-amido synthetase Probable indole-3-acetic acid-amido synthetase GH3.2 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 2) (OsGH3-2),Putative indole-3-acetic acid-amido synthetase GH3.10 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 10) (OsGH3-10),Probable indole-3-acetic acid-amido synthetase GH3.8 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 8) (OsGH3-8),Probable indole-3-acetic acid-amido synthetase GH3.9 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 9) (OsGH3-9),Os07g0576100 protein P0C0M2,Q6ZLA7,Q0D4Z6,Q6ZLA3,A0A0P0X8D7 GH32_ORYSJ,GH310_ORYSJ,GH38_ORYSJ,GH39_ORYSJ,A0A0P0X8D7_ORYSJ GH3.2 Os01g0764800 LOC_Os01g55940,GH3.10 Os07g0576100 LOC_Os07g38860 OJ1065_B06.4,GH3.8 Os07g0592600 LOC_Os07g40290 OJ1710_H11.110 OsJ_023992 OsJ_24963,GH3.9 Os07g0576500 LOC_Os07g38890 OJ1065_B06.9,Os07g0576100 OSNPB_070576100 FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ENOG411DSUM DTX11,DTX13,DTX12,DTX10,DTX14 F4HZH9,Q94AL1,Q8L731,Q8VYL8,Q9C994,A0A1P8AVA4,A0A1P8AVU1,B3H701 DTX11_ARATH,DTX13_ARATH,DTX12_ARATH,DTX10_ARATH,DTX14_ARATH,A0A1P8AVA4_ARATH,A0A1P8AVU1_ARATH,B3H701_ARATH Protein DETOXIFICATION 11 (AtDTX11) (Multidrug and toxic compound extrusion protein 11) (MATE protein 11),Protein DETOXIFICATION 13 (AtDTX13) (Multidrug and toxic compound extrusion protein 13) (MATE protein 13),Protein DETOXIFICATION 12 (AtDTX12) (Multidrug and toxic compound extrusion protein 12) (MATE protein 12),Protein DETOXIFICATION 10 (AtDTX10) (Multidrug and toxic compound extrusion protein 10) (MATE protein 10),Protein DETOXIFICATION 14 (AtDTX14) (Multidrug and toxic compound extrusion protein 14) (MATE protein 14),MATE efflux family protein R-ATH-425366; 52765,51847,52188,53018,52425,39359,40392,45081 Protein DETOXIFICATION 11 (AtDTX11) (Multidrug and toxic compound extrusion protein 11) (MATE protein 11),Protein DETOXIFICATION 13 (AtDTX13) (Multidrug and toxic compound extrusion protein 13) (MATE protein 13),Protein DETOXIFICATION 12 (AtDTX12) (Multidrug and toxic compound extrusion protein 12) (MATE protein 12),Protein DETOXIFICATION 10 (AtDTX10) (Multidrug and toxic compound extrusion protein 10) (MATE protein 10),Protein DETOXIFICATION 14 (AtDTX14) (Multidrug and toxic compound extrusion protein 14) (MATE protein 14),MATE efflux family protein integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2037848;,locus:2037868;,locus:2037858;,locus:2037723;,locus:2026311; AT1G15160,AT1G15180,AT1G15170,AT1G15150,AT1G71140 Mate efflux family protein Os05g0554000 protein (cDNA clone:001-123-D07, full insert sequence),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),Os05g0554000 protein (Putative MATE efflux protein) (cDNA clone:J033071I17, full insert sequence),Os01g0504500 protein B7EXY0,Q5QN97,Q6I630,Q5N7N1,A0A0P0V323 B7EXY0_ORYSJ,Q5QN97_ORYSJ,Q6I630_ORYSJ,Q5N7N1_ORYSJ,A0A0P0V323_ORYSJ Os05g0554000 OSNPB_050554000,Os01g0504500 OSNPB_010504500 P0436D06.9,Os05g0554000 OJ1263_E10.7 OSNPB_050554000,Os01g0684900 Os01g0684900 OsJ_03037 OSNPB_010684900 P0445E10.28 P0478H03.18,Os01g0504500 OSNPB_010504500 ENOG411DSUN QS Q9FGS4 NADA_ARATH Quinolinate synthase, chloroplastic (EC 2.5.1.72) (Protein ONSET OF LEAF DEATH 5) (Protein SULFUR E 3) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:16698895, ECO:0000269|PubMed:17452319}. The old5 mutant has almost a 3-fold reduction in its ability to stimulate the Cys desulfurase activity of Cp NifS. But the quinolate synthase activity of the old5 mutant is not significantly different from the wild type level of activity most likely because the QS domain is not the site of the mutation. Aspartate oxidase transcript levels are increased in the old5 mutant. And NAD NADH NADP and NADPH levels are also increased 27 days after germination. The activity of the NAD salvage pathway appears to be upregulated in this mutant. The level of several other metabolites including those associated with the TCA cycle are also altered in old5 mutants. The respiration rate of old5 is elevated compared to the respiration rate in wild type seedlings which leads to an increase in oxidative stress. Embryo defective; Preglobular / Globular-T. Hashimoto-2007 FUNCTION: Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. Can complement nadA-deficient E.coli mutant. Essential for the de novo synthesis of NAD. Participates also in cysteine desulfurization mediated by NFS2. Can activate the cysteine desulfurase activity of NFS2 in vitro. {ECO:0000269|PubMed:16698895, ECO:0000269|PubMed:17452319, ECO:0000269|PubMed:18978034}. MISCELLANEOUS: The highly oxygen-sensitive (4Fe-4S) cluster at its NadA domain, can be reconstituted by its own SufE domain in the presence of NFS2, cysteine and ferrous iron. {ECO:0000305|PubMed:17452319}. PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from iminoaspartate: step 1/1. ARA:AT5G50210-MONOMER; 2.5.1.72 78934 Quinolinate synthase, chloroplastic (EC 2.5.1.72) (Protein ONSET OF LEAF DEATH 5) (Protein SULFUR E 3) chloroplast [GO:0009507]; 4 iron, 4 sulfur cluster binding [GO:0051539]; enzyme activator activity [GO:0008047]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; quinolinate synthetase A activity [GO:0008987]; transferase activity [GO:0016740]; 'de novo' NAD biosynthetic process from aspartate [GO:0034628]; aerobic respiration [GO:0009060]; iron-sulfur cluster assembly [GO:0016226]; NAD biosynthetic process [GO:0009435]; positive regulation of sulfur metabolic process [GO:0051176] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:17452319}. locus:2157747; AT5G50210 Quinolinate synthetase A protein Quinolinate synthase, chloroplastic (EC 2.5.1.72) Q2QTL0 NADA_ORYSJ Os12g0290150 LOC_Os12g19304 FUNCTION: Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. {ECO:0000250}. ENOG411DSUP Q93Z01 MIK_ARATH Inositol 3-kinase (EC 2.7.1.64) (Myo-inositol kinase) (AtMIK) DISRUPTION PHENOTYPE: Low inositol hexakisphosphate (phytate) levels in seed tissue. {ECO:0000269|PubMed:21698461}. FUNCTION: Kinase that phosphorylates myo-inositol to produce multiple myo-inositol monophosphates. Participates in phytic acid biosynthesis in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000269|PubMed:21698461}. ARA:AT5G58730-MONOMER; 2.7.1.64 38646 Inositol 3-kinase (EC 2.7.1.64) (Myo-inositol kinase) (AtMIK) ATP binding [GO:0005524]; inositol 3-kinase activity [GO:0019140]; myo-inositol hexakisphosphate biosynthetic process [GO:0010264] locus:2178883; AT5G58730 carbohydrate kinase family protein Inositol 3-kinase (EC 2.7.1.64) (Myo-inositol kinase) (OsMIK) (Protein LOW PHYTIC ACID) Q84R36 MIK_ORYSJ MIK LPA Os03g0737701 LOC_Os03g52760 OSJNBa0057G07.25 OSJNBb0016H12.26 DISRUPTION PHENOTYPE: Strong reduction in seed phytic acid with a molar equivalent increase in inorganic phosphate. Strong increase in myo-inositol levels in seeds. {ECO:0000269|PubMed:17219209, ECO:0000269|PubMed:18726583, ECO:0000269|PubMed:24042572}. FUNCTION: Kinase that phosphorylates myo-inositol to produce multiple myo-inositol monophosphates. Participates in phytic acid biosynthesis in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000269|PubMed:17219209, ECO:0000269|PubMed:18726583}. ENOG411DSUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA clavaminate synthase-like protein Os08g0383800 protein (Putative Signal peptidase I) Q6YW66 Q6YW66_ORYSJ B1090H08.29 Os08g0383800 OSNPB_080383800 ENOG411DSUR Q8RWN9,Q5M729 ODP22_ARATH,ODP23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 2 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 2) (PDC-E2 2) (PDCE2 2),Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 3 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 3) (PDC-E2 3) (PDCE2 3) FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). {ECO:0000269|PubMed:14764908}. ARA:AT3G13930-MONOMER;,ARA:AT1G54220-MONOMER; R-ATH-204174;R-ATH-5362517;R-ATH-70268; 2.3.1.12 58468,58467 Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 2 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 2) (PDC-E2 2) (PDCE2 2),Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 3 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 3) (PDC-E2 3) (PDCE2 3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; pyruvate dehydrogenase complex [GO:0045254]; copper ion binding [GO:0005507]; dihydrolipoyllysine-residue acetyltransferase activity [GO:0004742]; glycolytic process [GO:0006096],mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; pyruvate dehydrogenase complex [GO:0045254]; dihydrolipoyllysine-residue acetyltransferase activity [GO:0004742]; glycolytic process [GO:0006096] locus:2088247;,locus:2020173; AT3G13930,AT1G54220 Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex Acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12),Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.-) Q5VS74,Q6YPG2,Q7XAL3,Q5VS73 Q5VS74_ORYSJ,Q6YPG2_ORYSJ,Q7XAL3_ORYSJ,Q5VS73_ORYSJ P0644B06.24-2 Os06g0105400 OSNPB_060105400,OJA1212_C06.23 Os02g0105200 OJ1212_C06.22 OJ1359_D06.3 OsJ_05022 OSNPB_020105200,P0492E07.128 P0710F09.103 Os07g0410100 OSNPB_070410100,P0644B06.24-1 Os06g0105400 OSNPB_060105400 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). {ECO:0000256|RuleBase:RU361137}. ENOG411DSUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 1-2 Q94JF3 GL12_ORYSJ Os01g0705100 LOC_Os01g50900 OsJ_003078 P0684B02.21 P0692C11.2 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DSUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helicase conserved C-terminal domain Putative eukaryotic initiation factor 4A-2 (eIF-4A-2) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-2) (DEAD-box ATP-dependent RNA helicase 19),Os02g0221300 protein Q0E2Q3,A0A0N7KEY4 IF4A2_ORYSJ,A0A0N7KEY4_ORYSJ Os02g0221300 LOC_Os02g12840 B1131G07.20,Os02g0221300 OSNPB_020221300 FUNCTION: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity). {ECO:0000250}. ENOG411DSUU A0A1I9LLJ3,A0A1I9LLJ4,F4IZ65 A0A1I9LLJ3_ARATH,A0A1I9LLJ4_ARATH,F4IZ65_ARATH Spc97 / Spc98 family of spindle pole body (SBP) component 137421,133409,137265 Spc97 / Spc98 family of spindle pole body (SBP) component microtubule organizing center [GO:0005815]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; microtubule nucleation [GO:0007020],equatorial microtubule organizing center [GO:0000923]; gamma-tubulin ring complex [GO:0008274]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; structural constituent of cytoskeleton [GO:0005200]; cytoplasmic microtubule organization [GO:0031122]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly [GO:0090307] locus:2079839; AT3G43610 Spc97 / Spc98 family Gamma-tubulin complex component C7J0X1,Q0JAY9 C7J0X1_ORYSJ,Q0JAY9_ORYSJ Os04g0566900 Os04g0566900 OSNPB_040566900,Os04g0566800 Os04g0566800 OSNPB_040566800 FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000256|RuleBase:RU363050}. ENOG411DSUV MQN23.12 Q8GUK8,Q9FJP7,F4KGJ9 Q8GUK8_ARATH,Q9FJP7_ARATH,F4KGJ9_ARATH At5g10060 (ENTH/VHS family protein) (Uncharacterized protein At5g10060),ENTH/VHS family protein (Uncharacterized protein At5g65180),ENTH/VHS family protein 51955,48709,34105 At5g10060 (ENTH/VHS family protein) (Uncharacterized protein At5g10060),ENTH/VHS family protein (Uncharacterized protein At5g65180),ENTH/VHS family protein locus:2184113;,locus:2171795; AT5G10060,AT5G65180 Pfam:DUF618 Os04g0636700 protein A0A0P0WFI1,A0A0P0WF98 A0A0P0WFI1_ORYSJ,A0A0P0WF98_ORYSJ Os04g0636700 OSNPB_040636700 ENOG411DSUW Q0WV78,A8MQA6 Q0WV78_ARATH,A8MQA6_ARATH Proline-, glutamic acid/leucine-rich protein (Uncharacterized protein At1g30240),Proline-, glutamic acid/leucine-rich protein 89904,89734 Proline-, glutamic acid/leucine-rich protein (Uncharacterized protein At1g30240),Proline-, glutamic acid/leucine-rich protein locus:2009792; AT1G30240 NA Os06g0343900 protein,Os05g0295900 protein (cDNA clone:J023037D24, full insert sequence),Os06g0343700 protein C7J4E4,Q0DJE5,A0A0P0WWP2 C7J4E4_ORYSJ,Q0DJE5_ORYSJ,A0A0P0WWP2_ORYSJ Os06g0343900 Os06g0343900 OSNPB_060343900,Os05g0295900 Os05g0295900 OSNPB_050295900,Os06g0343700 OSNPB_060343700 ENOG411DSUX ACLB-1,ACLB-2 Q9C522,Q9FGX1 ACLB1_ARATH,ACLB2_ARATH ATP-citrate synthase beta chain protein 1 (ATP-citrate synthase B-1) (EC 2.3.3.8) (ATP-citrate lyase B-1) (Citrate cleavage enzyme B-1),ATP-citrate synthase beta chain protein 2 (ATP-citrate synthase B-2) (EC 2.3.3.8) (ATP-citrate lyase B-2) (Citrate cleavage enzyme B-2) FUNCTION: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains (By similarity). {ECO:0000250}.,FUNCTION: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. n contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains. {ECO:0000269|PubMed:12376641}. MetaCyc:AT5G49460-MONOMER; R-ATH-163765;R-ATH-6798695;R-ATH-75105; 2.3.3.8 65814,65828 ATP-citrate synthase beta chain protein 1 (ATP-citrate synthase B-1) (EC 2.3.3.8) (ATP-citrate lyase B-1) (Citrate cleavage enzyme B-1),ATP-citrate synthase beta chain protein 2 (ATP-citrate synthase B-2) (EC 2.3.3.8) (ATP-citrate lyase B-2) (Citrate cleavage enzyme B-2) citrate lyase complex [GO:0009346]; cytosol [GO:0005829]; membrane [GO:0016020]; ATP binding [GO:0005524]; ATP citrate synthase activity [GO:0003878]; metal ion binding [GO:0046872]; acetyl-CoA biosynthetic process [GO:0006085]; lipid metabolic process [GO:0006629],citrate lyase complex [GO:0009346]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATP citrate synthase activity [GO:0003878]; metal ion binding [GO:0046872]; acetyl-CoA biosynthetic process [GO:0006085]; lipid metabolic process [GO:0006629] DEVELOPMENTAL STAGE: Expressed in flower buds at stage 6 of development in tapetal cells and at stage 10 in the epidermal cells of growing petals and ovaries. In young siliques, expressed transiently in the inner integument of the ovules just prior to testal deposition. Expressed in the developing embryo with a maximal level at the heart and torpedo stages. The expression then disappears in the mature embryo. During seed germination, expressed in the vascular bundles, apical meristem, epidermis of the seedling cotyledon, stem, and root. Highly expressed in the root tip of seedlings 4 days after imbibition. {ECO:0000269|PubMed:12376641}. TISSUE SPECIFICITY: Expressed in trichomes, epidermal leaf cells, anther tapetal cells, stigma and in young vascular bundles of expanding leaves, cotyledons, roots, pedicel of flowers and siliques. {ECO:0000269|PubMed:12376641}. locus:2084284;,locus:2158009; AT3G06650,AT5G49460 ATP-citrate synthase beta chain protein ATP-citrate synthase beta chain protein 1 (ATP-citrate synthase B-1) (EC 2.3.3.8) (ATP-citrate lyase B-1) (Citrate cleavage enzyme B-1),Os01g0300200 protein (Fragment) Q93VT8,A0A0P0V1H5 ACLB1_ORYSJ,A0A0P0V1H5_ORYSJ ACLB-1 Os01g0300200 LOC_Os01g19450 OsJ_01435 P0487H02.31 P0682B08.9,Os01g0300200 OSNPB_010300200 FUNCTION: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains (By similarity). {ECO:0000250}. ENOG411DSUZ TUFA P17745 EFTU_ARATH Elongation factor Tu, chloroplastic (EF-Tu) (Ras-related protein RABE1b) (AtRABE1b) (Ras-related protein Rab8D) (AtRab8D) FUNCTION: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. 51630 Elongation factor Tu, chloroplastic (EF-Tu) (Ras-related protein RABE1b) (AtRABE1b) (Ras-related protein Rab8D) (AtRab8D) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; nucleoid [GO:0009295]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plastid [GO:0009536]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746] locus:2128615; AT4G20360 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (By similarity) Elongation factor Tu,Os02g0595700 protein Q6ZI53,A0A0P0VLD7 Q6ZI53_ORYSJ,A0A0P0VLD7_ORYSJ OJ1126_D09.31-1 Os02g0595700 OsJ_07364 OSNPB_020595700,Os02g0595700 OSNPB_020595700 FUNCTION: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. {ECO:0000256|RuleBase:RU000325}. ENOG411DSU0 Q8L6Y3 PP396_ARATH Pentatricopeptide repeat-containing protein At5g24830 66536 Pentatricopeptide repeat-containing protein At5g24830 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2149433; AT5G24830 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DSU1 RPP13L4 Q38834 R13L4_ARATH Disease resistance RPP13-like protein 4 (Disease resistance protein ZAR1) (Protein HOPZ-ACTIVATED RESISTANCE 1) FUNCTION: CC-NB-LRR receptor-like protein required for recognition of the Pseudomonas syringae type III effector HopZ1a. Confers allele-specific recognition and virulence attenuation of HopZ1a. Immunity mediated by ZAR1 is independent of several genes required by other resistance protein signaling pathways such as NDR1 and RAR1. {ECO:0000269|PubMed:20368970}. 97040 Disease resistance RPP13-like protein 4 (Disease resistance protein ZAR1) (Protein HOPZ-ACTIVATED RESISTANCE 1) plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2078012; AT3G50950 disease resistance RPP13-like protein NA NA NA NA NA NA NA ENOG411DSU2 VTC5,VTC2 Q9FLP9,Q8RWE8 GGAP2_ARATH,GGAP1_ARATH GDP-L-galactose phosphorylase 2 (EC 2.7.7.69) (Protein VITAMIN C DEFECTIVE 5),GDP-L-galactose phosphorylase 1 (EC 2.7.7.69) (Protein VITAMIN C DEFECTIVE 2) DISRUPTION PHENOTYPE: No visible phenotype and slightly decreased ascorbate levels; due to the partial redundancy with VTC2. Vtc2 and vtc5 double mutants show growth arrest immediately upon germination and are not viable. {ECO:0000269|PubMed:17877701}.,DISRUPTION PHENOTYPE: Dwarf. 20% of the wild-type ascorbate level, due to the partial redundancy with VTC5. Vtc2 and vtc5 double mutants show growth arrest immediately upon germination and are not viable. {ECO:0000269|PubMed:17877701}. Leaves have 20% of wild-type ascorbate concentration.,seedlings stopped growing after initial expansion of the cotyledons which then bleached within 2 weeks. Can be rescued by supplementing the growth medium with L-galactose or ascorbate.,Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type.,have 10-25% of wild type ascorbic acid exhibit microlesions express pathogenesis-related (PR) proteins and have enhanced basal resistance against infections caused by Pseudomonas syringae. The mutants have a delayed senescence phenotype with smaller leaf cells than the wild type at leaf maturity. The vtc leaves have more glutathione than the wild type with higher ratios of reduced glutathione to glutathione disulfide. Slow growth; Necrotic lesions; Low ascorbic acid levels; Resistant to Pseudomonas syringae-C. Foyer-2005 FUNCTION: Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Acts as a phosphorylase rather than as a transferase. Uses preferentially GDP-L-galactose and GDP-D-glucose as substrates. Lower activity with GDP-L-fucose, very low activity with GDP-D-mannose, and no activity with UDP-D-glucose, UDP-D-galactose or ADP-D-glucose. Highly specific for inorganic phosphate as the guanylyl acceptor. {ECO:0000269|PubMed:17485667, ECO:0000269|PubMed:17877701, ECO:0000269|PubMed:18463094}.,FUNCTION: Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Acts as a phosphorylase rather than as a transferase. Uses preferentially GDP-L-galactose and GDP-D-glucose as substrates. Lower activity with GDP-L-fucose, very low activity with GDP-D-mannose, and no activity with UDP-D-glucose, UDP-D-galactose or ADP-D-glucose. Highly specific for inorganic phosphate as the guanylyl acceptor. {ECO:0000269|PubMed:17462988, ECO:0000269|PubMed:17485667, ECO:0000269|PubMed:17877701, ECO:0000269|PubMed:18463094}. PATHWAY: Cofactor biosynthesis; L-ascorbate biosynthesis via GDP-alpha-D-mannose pathway; L-ascorbate from GDP-alpha-D-mannose: step 2/5. MetaCyc:AT5G55120-MONOMER;,MetaCyc:AT4G26850-MONOMER; 2.7.7.69; 2.7.7.69 48316,48970 GDP-L-galactose phosphorylase 2 (EC 2.7.7.69) (Protein VITAMIN C DEFECTIVE 5),GDP-L-galactose phosphorylase 1 (EC 2.7.7.69) (Protein VITAMIN C DEFECTIVE 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; galactose-1-phosphate guanylyltransferase (GDP) activity [GO:0010475]; GDP-D-glucose phosphorylase activity [GO:0080048]; GDP-L-galactose phosphorylase activity [GO:0080047]; guanyl-nucleotide exchange factor activity [GO:0005085]; hydrolase activity [GO:0016787]; nucleotide binding [GO:0000166]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; glucose metabolic process [GO:0006006]; L-ascorbic acid biosynthetic process [GO:0019853]; response to jasmonic acid [GO:0009753]; response to ozone [GO:0010193],cytoplasm [GO:0005737]; nucleus [GO:0005634]; galactose-1-phosphate guanylyltransferase (GDP) activity [GO:0010475]; GDP-D-glucose phosphorylase activity [GO:0080048]; GDP-galactose:glucose-1-phosphate guanylyltransferase activity [GO:0010472]; GDP-galactose:mannose-1-phosphate guanylyltransferase activity [GO:0010471]; GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity [GO:0010473]; GDP-L-galactose phosphorylase activity [GO:0080047]; glucose-1-phosphate guanylyltransferase (GDP) activity [GO:0010474]; guanyl-nucleotide exchange factor activity [GO:0005085]; hydrolase activity [GO:0016787]; mannose-1-phosphate guanylyltransferase (GDP) activity [GO:0008928]; nucleotide binding [GO:0000166]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; glucose metabolic process [GO:0006006]; L-ascorbic acid biosynthetic process [GO:0019853]; response to heat [GO:0009408]; response to jasmonic acid [GO:0009753] DEVELOPMENTAL STAGE: Expressed in all developmental stages. {ECO:0000269|PubMed:18516687}. TISSUE SPECIFICITY: Expressed in leaves, stems, roots, flowers and siliques. {ECO:0000269|PubMed:17877701}.,TISSUE SPECIFICITY: Expressed in leaves, stems, roots, flowers and siliques. Highest expression in green tissues. {ECO:0000269|PubMed:17877701, ECO:0000269|PubMed:18516687}. locus:2161620;,locus:2116342; AT5G55120,AT4G26850 GDP-L-galactose phosphorylase Os12g0190000 protein (VTC2, putative, expressed),Os12g0190000 protein (Fragment) Q2QWM9,A0A0P0Y7R4 Q2QWM9_ORYSJ,A0A0P0Y7R4_ORYSJ LOC_Os12g08810 Os12g0190000 OSNPB_120190000,Os12g0190000 OSNPB_120190000 ENOG411DSU3 PUP11 Q9LPF6 PUP11_ARATH Probable purine permease 11 (AtPUP11) 41290 Probable purine permease 11 (AtPUP11) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863] locus:2194814; AT1G44750 purine permease Os02g0689200 protein (Putative purine permease),Os02g0689200 protein (Putative purine permease) (cDNA clone:J023134O11, full insert sequence),Os02g0689200 protein (Fragment) Q6ZGZ0,Q6ZGZ1,A0A0P0VNC0 Q6ZGZ0_ORYSJ,Q6ZGZ1_ORYSJ,A0A0P0VNC0_ORYSJ OJ1743_B12.21-2 Os02g0689200 OSNPB_020689200,OJ1743_B12.21-1 Os02g0689200 OSNPB_020689200,Os02g0689200 OSNPB_020689200 ENOG411DSU4 NAT3,PDE135 Q8GZD4,A0A1P8B238,F4IUL2 NAT3_ARATH,A0A1P8B238_ARATH,F4IUL2_ARATH Nucleobase-ascorbate transporter 3 (AtNAT3),Xanthine/uracil permease family protein Seedling lethal (inferred from pigment defect)-D. Meinke-2002 R-ATH-196836; 60170,44568,46815 Nucleobase-ascorbate transporter 3 (AtNAT3),Xanthine/uracil permease family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; adenine transmembrane transporter activity [GO:0015207]; guanine transmembrane transporter activity [GO:0015208]; solute:cation symporter activity [GO:0015294]; uracil transmembrane transporter activity [GO:0015210]; adenine import across plasma membrane [GO:0098702]; guanine import across plasma membrane [GO:0098710]; hypoxanthine transport [GO:0035344]; uracil import across plasma membrane [GO:0098721],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Expressed in gynoecium development, disappearing after pollination. {ECO:0000269|PubMed:16982705}. TISSUE SPECIFICITY: Expressed in the apical meristem 4 days after imbibition (DAI). Expressed in the major veins of rosette leaves and pedicels. Expressed in the root central cylinder, root meristems, root tips and lateral root primordia. {ECO:0000269|PubMed:16982705}. locus:2066190; AT2G26510 nucleobase-ascorbate transporter Os12g0583900 protein (Xanthine/uracil permease family protein, expressed) (cDNA clone:J013002N15, full insert sequence),Os12g0583900 protein (Fragment) Q2QN04,A0A0N7KUA1,A0A0P0YBX9 Q2QN04_ORYSJ,A0A0N7KUA1_ORYSJ,A0A0P0YBX9_ORYSJ LOC_Os12g39420 Os12g0583900 OSNPB_120583900,Os12g0583900 OSNPB_120583900 ENOG411DSU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-cell receptor-associated protein 31-like Os06g0367500 protein (Fragment) A0A0P0WWH9 A0A0P0WWH9_ORYSJ Os06g0367500 OSNPB_060367500 ENOG411DSU6 Q8W568,A0A1P8AWG3 Q8W568_ARATH,A0A1P8AWG3_ARATH Alpha/beta hydrolase family protein (At1g73750/F25P22_17),Alpha/beta hydrolase family protein 49683,51517 Alpha/beta hydrolase family protein (At1g73750/F25P22_17),Alpha/beta hydrolase family protein hydrolase activity [GO:0016787] locus:2027784; AT1G73750 NA NA NA NA NA NA NA NA ENOG411DSU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DSU8 SDRd,F12M12_140 Q94AL3,Q5PP71,Q9SH24,Q9LX78,Q67Z59,A0A1P8AN69,A0A1P8AN93,F4HYU6,Q304C6,F4HYU4,F4JFB9,F4IPI3,F4I227 Q94AL3_ARATH,Q5PP71_ARATH,Q9SH24_ARATH,Q9LX78_ARATH,Q67Z59_ARATH,A0A1P8AN69_ARATH,A0A1P8AN93_ARATH,F4HYU6_ARATH,Q304C6_ARATH,F4HYU4_ARATH,F4JFB9_ARATH,F4IPI3_ARATH,F4I227_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Putative oxidoreductase),At1g62610 (NAD(P)-binding Rossmann-fold superfamily protein),F2K11.24 (NAD(P)-binding Rossmann-fold superfamily protein),Dehydrogenase-like protein (NAD(P)-binding Rossmann-fold superfamily protein) (Short-chain dehydrogenase/reductase family protein),Beta-ketoacyl-ACP reductase-like protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT3G55290-MONOMER;,ARA:AT1G63380-MONOMER;,ARA:AT3G46170-MONOMER;,ARA:AT3G55310-MONOMER; 30204,30300,31328,30988,30095,30998,30558,30740,30044,30172,30076,34323,30742 NAD(P)-binding Rossmann-fold superfamily protein (Putative oxidoreductase),At1g62610 (NAD(P)-binding Rossmann-fold superfamily protein),F2K11.24 (NAD(P)-binding Rossmann-fold superfamily protein),Dehydrogenase-like protein (NAD(P)-binding Rossmann-fold superfamily protein) (Short-chain dehydrogenase/reductase family protein),Beta-ketoacyl-ACP reductase-like protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein peroxisome [GO:0005777]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491]; response to cadmium ion [GO:0046686],membrane [GO:0016020]; oxidoreductase activity [GO:0016491] locus:2100621;,locus:2075296;,locus:2100636;,locus:2203856;,locus:505006251;,locus:2031376; AT3G55290,AT1G62610,AT1G63380,AT3G46170,AT3G55310,AT2G17845 reductase Os08g0510400 protein (Putative alcohol dehydrogenase homolog) (cDNA clone:J023012H05, full insert sequence) Q84YJ8 Q84YJ8_ORYSJ Os08g0510400 Os08g0510400 OSJNBa0016N23.122 OSNPB_080510400 ENOG411DSU9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ Os01g0708700 protein (SF16 protein-like) Q9ASF7,Q5N9C7 Q9ASF7_ORYSJ,Q5N9C7_ORYSJ P0456F08.2-1 Os01g0708700 OsJ_03204 OSNPB_010708700,P0510F09.30-2 Os01g0708700 P0456F08.2-2 OSNPB_010708700 ENOG411EEG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger ZZ type NA NA NA NA NA NA NA ENOG411EEGZ Q94JW9 Q94JW9_ARATH At2g43340 (Uncharacterized protein At2g43340) (Uncharacterized protein At2g43340; T1O24.8) 20958 At2g43340 (Uncharacterized protein At2g43340) (Uncharacterized protein At2g43340; T1O24.8) locus:2058213; AT2G43340 at2g43340 (e NA NA NA NA NA NA NA ENOG411E205 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Possible lysine decarboxylase NA NA NA NA NA NA NA ENOG411E204 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411E207 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein Os08g0277200 protein (Putative cinnamoyl-CoA reductase) (cDNA clone:002-103-D08, full insert sequence),Os08g0441500 protein Q6Z1M5,A0A0N7KPX5 Q6Z1M5_ORYSJ,A0A0N7KPX5_ORYSJ Os08g0277200 Os08g0277200 OSJNBa0091M20.3 OSNPB_080277200,Os08g0441500 OSNPB_080441500 ENOG411E206 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin assembly protein Os08g0467300 protein Q6YS99 Q6YS99_ORYSJ Os08g0467300 OsJ_27617 OSNPB_080467300 P0104B02.39 P0470B03.10 ENOG411E201 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain OSJNBa0072F16.11 protein (Os04g0461000 protein),Os02g0579300 protein Q7XUV5,A0A0P0VKS5 Q7XUV5_ORYSJ,A0A0P0VKS5_ORYSJ Os04g0461000 Os04g0461000 OSJNBa0072F16.11 OSNPB_040461000,Os02g0579300 OSNPB_020579300 ENOG411E200 PCMP-E82 Q9MA95 PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240 63290 Putative pentatricopeptide repeat-containing protein At3g05240 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2096244; AT3G05240 Pentatricopeptide repeat-containing protein Os08g0511000 protein (Selenium binding protein-like protein) (cDNA clone:002-130-D12, full insert sequence) Q7EXY6 Q7EXY6_ORYSJ Os08g0511000 Os08g0511000 OSJNBa0016N23.128 OSNPB_080511000 ENOG411E203 Q9LK44,F4JUL3 Q9LK44_ARATH,F4JUL3_ARATH Uncharacterized protein 63104,40591 Uncharacterized protein locus:2095178;,locus:2129440; AT3G23740,AT4G14120 NA Os01g0101800 protein Q655M3 Q655M3_ORYSJ Os01g0101800 OsJ_00015 OSNPB_010101800 P0672D08.25 ENOG411E202 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase II carboxy-terminal domain kinase activity Cyclin-dependent kinase G-1 (CDKG;1) (EC 2.7.11.22) (EC 2.7.11.23),Os02g0602100 protein (Fragment) Q6K5F8,A0A0P0VLM2 CDKG1_ORYSJ,A0A0P0VLM2_ORYSJ CDKG-1 Os02g0602100 LOC_Os02g39010 OJ1669_F01.7 OJ1791_B03.45,Os02g0602100 OSNPB_020602100 ENOG411E209 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411E208 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF Heat stress transcription factor B-4d (Heat stress transcription factor 10) (OsHsf-10) Q10KX8 HFB4D_ORYSJ HSFB4D HSF10 Os03g0366800 LOC_Os03g25120 OsJ_10971 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411EJ0Y RFL1,RPS5,SUMM2 Q9SH22,P60838,O23317,Q8L3R3,O64973,A0A1P8AQY6,A0A1P8AUE3,A0A1P8AW79 DRL20_ARATH,DRL1_ARATH,DRL24_ARATH,RFL1_ARATH,RPS5_ARATH,A0A1P8AQY6_ARATH,A0A1P8AUE3_ARATH,A0A1P8AW79_ARATH Probable disease resistance protein At1g63360,Probable disease resistance protein At1g12280,Probable disease resistance protein At4g14610 (pCol1),Disease resistance protein RFL1 (RPS5-like protein 1) (pNd13/pNd14),Disease resistance protein RPS5 (Resistance to Pseudomonas syringae protein 5) (pNd3/pNd10),RPS5-like 1,LRR and NB-ARC domains-containing disease resistance protein,Disease resistance protein (CC-NBS-LRR class) family Resistant to Pseudomonas syringae-R. Innes-1998 FUNCTION: Probable disease resistance protein. {ECO:0000250}.,FUNCTION: Disease resistance protein that mediates defense responses against the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000, and the virulent oomycete Hyaloperonospora arabidopsidis isolate Noco2. Becomes active when the MEKK1-MKK1-MKK2-MPK4 kinase cascade is disrupted by the microbial effector hopAI1. Does not seem to be required for the activation of MPK4 by flg22, or flg22-induced up-regulation of PAD3 (PubMed:22423965). Functions downstream of MEKK2/SUMM1 in immune responses, including cell death and defense responses (PubMed:22643122). {ECO:0000269|PubMed:22423965, ECO:0000269|PubMed:22643122}.,FUNCTION: Disease resistance (R) protein.,FUNCTION: Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. In case of infection by Pseudomonas syringae, AvrPphB triggers RPS5-mediated defense mechanism via the cleavage of PBS1, suggesting that the cleavage of PBS1 could trigger an exchange of ADP for ATP, thereby activating RPS5. May function as a fine-tuned sensor of alterations in the structure of the effector target PBS1. {ECO:0000269|PubMed:12947197, ECO:0000269|PubMed:17277084, ECO:0000269|PubMed:22372664, ECO:0000269|PubMed:9724691}. MISCELLANEOUS: In contrast to RPS5, which is absent in cv. Landsberg erecta, RFL1 in present in both cv. Columbia and cv. Landsberg erecta.,MISCELLANEOUS: RPS5 is absent in cv. Landsberg erecta. 101079,102641,81918,101445,101802,96910,94729,87782 Probable disease resistance protein At1g63360,Probable disease resistance protein At1g12280,Probable disease resistance protein At4g14610 (pCol1),Disease resistance protein RFL1 (RPS5-like protein 1) (pNd13/pNd14),Disease resistance protein RPS5 (Resistance to Pseudomonas syringae protein 5) (pNd3/pNd10),RPS5-like 1,LRR and NB-ARC domains-containing disease resistance protein,Disease resistance protein (CC-NBS-LRR class) family plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; response to bacterium [GO:0009617]; signal transduction [GO:0007165],intracellular [GO:0005622]; plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; nucleotide binding [GO:0000166]; signaling receptor activity [GO:0038023]; cell death [GO:0008219]; defense response [GO:0006952]; defense response to bacterium, incompatible interaction [GO:0009816]; plant-type hypersensitive response [GO:0009626],ADP binding [GO:0043531]; defense response [GO:0006952] locus:2031356;,locus:2034770;,locus:2201986;,locus:2201996; AT1G63360,AT1G12280,AT4G14610,AT1G12210,AT1G12220 NB-ARC domain NA NA NA NA NA NA NA ENOG411EJ0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) A0A0P0VQC7 A0A0P0VQC7_ORYSJ Os02g0785400 OSNPB_020785400 ENOG411EJ0Z Q6DBH2,F4JKV4 Q6DBH2_ARATH,F4JKV4_ARATH At4g09970 (Transmembrane protein),Transmembrane protein 28115,24071 At4g09970 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021]; circadian rhythm [GO:0007623],integral component of membrane [GO:0016021] locus:2140603; AT4G09970 NA NA NA NA NA NA NA NA ENOG411EJ0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: translocated promoter region nuclear basket protein NA NA NA NA NA NA NA ENOG411EJ0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoporin protein Ndc1-Nup NA NA NA NA NA NA NA ENOG411EJ0W Q8VYN4 Q8VYN4_ARATH Cotton fiber protein (Uncharacterized protein At2g34610) 33726 Cotton fiber protein (Uncharacterized protein At2g34610) integral component of membrane [GO:0016021] locus:2062335; AT2G34610 NA NA NA NA NA NA NA NA ENOG411EJ0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EJ0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: linoleoyl-CoA desaturase activity NA NA NA NA NA NA NA ENOG411EJ0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec23/Sec24 beta-sandwich domain Os11g0433500 protein (Fragment),Os11g0433600 protein (Fragment) Q0IT04,Q0IT03 Q0IT04_ORYSJ,Q0IT03_ORYSJ Os11g0433500 OSNPB_110433500,Os11g0433600 OSNPB_110433600 ENOG411EJ0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EJ0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphoglyceride transfer family protein NA NA NA NA NA NA NA ENOG411EJ0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain Os11g0272425 protein A0A0P0Y0Z2 A0A0P0Y0Z2_ORYSJ Os11g0272425 OSNPB_110272425 ENOG411EJ0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EJ0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3554) Os02g0538400 protein A0A0P0VK33 A0A0P0VK33_ORYSJ Os02g0538400 OSNPB_020538400 ENOG411EJ0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LA NA NA NA NA NA NA NA ENOG411EJ0G F25L23_290 Q9LX28,Q2V3N1 Q9LX28_ARATH,Q2V3N1_ARATH At3g59430 (Uncharacterized protein F25L23_290),Uncharacterized protein 49480,37821 At3g59430 (Uncharacterized protein F25L23_290),Uncharacterized protein locus:2081232; AT3G59430 NA NA NA NA NA NA NA NA ENOG411EJ0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os06g0249000 protein,Os02g0262200 protein,Os08g0410950 protein (Fragment),Os09g0105100 protein A3BAA0,A0A0P0VHA9,A0A0P0XFP6,A0A0P0XJL4 A3BAA0_ORYSJ,A0A0P0VHA9_ORYSJ,A0A0P0XFP6_ORYSJ,A0A0P0XJL4_ORYSJ Os06g0249000 OsJ_20820 OSNPB_060249000,Os02g0262200 OSNPB_020262200,Os08g0410950 OSNPB_080410950,Os09g0105100 OSNPB_090105100 ENOG411EJ09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EJ08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EJ05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR NA NA NA NA NA NA NA ENOG411EJ04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_TTF NA NA NA NA NA NA NA ENOG411EJ06 Q9LZ36,F4I9V7 Q9LZ36_ARATH,F4I9V7_ARATH Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) (Uncharacterized protein T22P11_250),Ubiquitin carboxyl-terminal hydrolase-related protein 72104,126533 Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) (Uncharacterized protein T22P11_250),Ubiquitin carboxyl-terminal hydrolase-related protein mitochondrion [GO:0005739]; hydrolase activity [GO:0016787]; nucleic acid binding [GO:0003676],hydrolase activity [GO:0016787]; nucleic acid binding [GO:0003676] locus:2181828;,locus:2200350; AT5G02660,AT1G65200 Protein of unknown function (DUF627) NA NA NA NA NA NA NA ENOG411EJ01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PDS5 regulator of cohesion maintenance homolog NA NA NA NA NA NA NA ENOG411EJ00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.13) (Gibberellin 2-beta-hydroxylase 2) (Gibberellin 2-oxidase 2) (GA 2-oxidase 2) (OsGA2ox2) Q5ZA21 G2OX2_ORYSJ GA2OX2 Os01g0332200 LOC_Os01g22910 B1140D12.2 FUNCTION: Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. {ECO:0000250|UniProtKB:Q5W726}. ENOG411EJ03 Q9LM75,Q9LM74,Q9FVU4,Q9LM73,Q9C694,Q9LM72 FBK6_ARATH,FB13_ARATH,FB62_ARATH,FB14_ARATH,Q9C694_ARATH,Q9LM72_ARATH Putative F-box/kelch-repeat protein At1g20790,Putative F-box protein At1g20795,Putative F-box protein At1g57580,Putative F-box protein At1g20800,SWI-SNF-related chromatin binding protein (Uncharacterized protein T8L23.24),F-box/associated interaction domain protein (F2D10.31) 49804,47943,39765,55314,22026,21161 Putative F-box/kelch-repeat protein At1g20790,Putative F-box protein At1g20795,Putative F-box protein At1g57580,Putative F-box protein At1g20800,SWI-SNF-related chromatin binding protein (Uncharacterized protein T8L23.24),F-box/associated interaction domain protein (F2D10.31) ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2030472;,locus:1005716748;,locus:2206475;,locus:2030492;,locus:2827210; AT1G20790,AT1G20795,AT1G57580,AT1G20800,AT1G57565 NA NA NA NA NA NA NA NA ENOG411EJ02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Mediator complex subunit 23 NA NA NA NA NA NA NA ENOG411E20E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q5Z8H5 Q5Z8H5_ORYSJ prx90 Os06g0695500 OsJ_22485 OSNPB_060695500 P0622F03.22 ENOG411E20D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) Os04g0293700 protein (cDNA clone:002-110-D02, full insert sequence),Os04g0610100 protein (Fragment),Os08g0392500 protein Q0JEC7,C7J0W0,Q6ZFG2 Q0JEC7_ORYSJ,C7J0W0_ORYSJ,Q6ZFG2_ORYSJ Os04g0293700 Os04g0293700 OSNPB_040293700,Os04g0610100 Os04g0610100 OSNPB_040610100,OJ1756_G07.6 Os08g0392500 OSNPB_080392500 ENOG411E20G KCS20 Q9FG87 KCS20_ARATH 3-ketoacyl-CoA synthase 20 (KCS-20) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 20) (VLCFA condensing enzyme 20) DISRUPTION PHENOTYPE: No visible phenotype, but reduced root growth. Kcs2 and kcs20 double mutants have a glossy green appearance due to a significant reduction of the amount of epicuticular wax crystals on the stems and siliques, a significant reduction of C22 and C24 VLCFA derivatives in aliphatic suberin and a roots growth retardation and abnormal lamellation of the suberin layer in the endodermis. {ECO:0000269|PubMed:19619160}. FUNCTION: Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26) (PubMed:15277688). Functionally redundant with KCS2 in the two-carbon elongation of C22 fatty acids that is required for cuticular wax and root suberin biosynthesis (PubMed:19619160). {ECO:0000269|PubMed:15277688, ECO:0000269|PubMed:19619160}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT5G43760-MONOMER; 2.3.1.199 59307 3-ketoacyl-CoA synthase 20 (KCS-20) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 20) (VLCFA condensing enzyme 20) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid elongase activity [GO:0009922]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in aerial organs (PubMed:15914083). Expressed in leaves, flowers, siliques and stems (PubMed:18465198). Expressed in roots, young seedlings, leaves, flowers and siliques (PubMed:19619160). {ECO:0000269|PubMed:15914083, ECO:0000269|PubMed:18465198, ECO:0000269|PubMed:19619160}. locus:2170837; AT5G43760 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411E20F O80757 O80757_ARATH RING/U-box superfamily protein (T13D8.23 protein) R-ATH-983168; 37423 RING/U-box superfamily protein (T13D8.23 protein) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2195573; AT1G60360 zinc finger NA NA NA NA NA NA NA ENOG411E20A F28J12.120 Q8VZ75,A0A1P8B3W2 Q8VZ75_ARATH,A0A1P8B3W2_ARATH D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) Restored PR1 expression to npr1 mutant (sni1 mutation in the npr1 bacground) and also mutant plantshad induced resistance to bacterium Psm ES4326 and oomycete pathogen Peronospora parasitica Noco-2; the resistance was similar to that of WT. 3.1.-.- 16919,15206 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cytoplasm [GO:0005737]; aminoacyl-tRNA editing activity [GO:0002161]; D-tyrosyl-tRNA(Tyr) deacylase activity [GO:0051500]; helicase activity [GO:0004386]; tRNA metabolic process [GO:0006399],cytoplasm [GO:0005737]; D-aminoacyl-tRNA deacylase activity [GO:0051499] locus:2124519; AT4G18460 Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity) D-aminoacyl-tRNA deacylase (EC 3.1.1.-) (EC 3.1.1.96) Q5NA78 Q5NA78_ORYSJ Os01g0242500 Os01g0242500 B1066G12.16 OsJ_01069 OSNPB_010242500 ENOG411E20C CRRSP12,PDLP6 Q9ZU94,A0A1P8B0Y6 CRR12_ARATH,A0A1P8B0Y6_ARATH Cysteine-rich repeat secretory protein 12 (Plasmodesmata-located protein 6) (PDLP6),Plasmodesmata-located protein 6 FUNCTION: Modulates cell-to-cell trafficking. {ECO:0000250}. 30204,30147 Cysteine-rich repeat secretory protein 12 (Plasmodesmata-located protein 6) (PDLP6),Plasmodesmata-located protein 6 integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transport [GO:0006810]; viral process [GO:0016032],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Highly expressed in inflorescence silique (at mRNA level). {ECO:0000269|PubMed:19704520}. locus:2065450; AT2G01660 cysteine-rich repeat secretory protein NA NA NA NA NA NA NA ENOG411E20B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Laccase-15 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 15) (Diphenol oxidase 15) (Urishiol oxidase 15) Q339K6 LAC15_ORYSJ LAC15 Os10g0346300 LOC_Os10g20610 OSJNBa0045C13.15 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411E20M F4HZ99,F4IZK5,Q8RXR8,A0A1P8AM24,F4HZA0 F4HZ99_ARATH,F4IZK5_ARATH,Q8RXR8_ARATH,A0A1P8AM24_ARATH,F4HZA0_ARATH Uncharacterized protein,CW-type Zinc Finger,Uncharacterized protein At1g02990 140781,154091,118443,134180,136994 Uncharacterized protein,CW-type Zinc Finger,Uncharacterized protein At1g02990 plasmodesma [GO:0009506]; zinc ion binding [GO:0008270] locus:2024710;,locus:2081655; AT1G02990,AT3G62900 CW-type Zinc Finger Os03g0347300 protein (Fragment) A0A0P0VY74 A0A0P0VY74_ORYSJ Os03g0347300 OSNPB_030347300 ENOG411E20N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os03g0760100 protein Q7XWV5,A0A0P0W3B9 Q7XWV5_ORYSJ,A0A0P0W3B9_ORYSJ Os04g0270900 OsJ_14081 OSJNBb0067G11.12 OSNPB_040270900,Os03g0760100 OSNPB_030760100 ENOG411E20I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase GDSL-like Lipase/Acylhydrolase family protein, expressed (Os10g0393800 protein) (Putative lipase) (cDNA clone:002-140-H05, full insert sequence),GDSL-like Lipase/Acylhydrolase family protein, expressed (Os10g0394000 protein) Q7G7C9,Q7G307 Q7G7C9_ORYSJ,Q7G307_ORYSJ LOC_Os10g25400 Os10g0393800 OsJ_31403 OSJNBa0011L09.2 OSNPB_100393800,Os10g0394000 LOC_Os10g25420 OSNPB_100394000 ENOG411E20H NHL13 Q9ZVD2 NHL13_ARATH NDR1/HIN1-like protein 13 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plant display enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (Pst DC3000). {ECO:0000269|PubMed:26206852}. FUNCTION: Required for plant immunity against the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (Pst DC3000). {ECO:0000269|PubMed:26206852}. 28976 NDR1/HIN1-like protein 13 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; defense response to bacterium [GO:0042742] locus:2059274; AT2G27080 Harpin-induced protein 1 containing protein expressed Harpin-induced protein 1 containing protein, expressed (Os11g0130400 protein),Os07g0635100 protein,Harpin-induced protein 1 containing protein, expressed (Os12g0127200 protein),Os01g0812100 protein (Fragment) Q2RB10,Q8L4I9,Q2QY99,A0A0N7KDY1 Q2RB10_ORYSJ,Q8L4I9_ORYSJ,Q2QY99_ORYSJ,A0A0N7KDY1_ORYSJ LOC_Os11g03600 Os11g0130400 OSNPB_110130400,P0455H11.124 OJ1332_C12.108 Os07g0635100 OsJ_25268 OSNPB_070635100,LOC_Os12g03370 Os12g0127200 OsJ_35086 OSNPB_120127200,Os01g0812100 OSNPB_010812100 ENOG411E20K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2921) Os01g0677900 protein Q5QM74 Q5QM74_ORYSJ Os01g0677900 Os01g0677900 B1144G04.17 OSNPB_010677900 ENOG411E20J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0487300 protein (Os07g0488400 protein),Os01g0366300 protein (Receptor protein kinase-like protein) (cDNA clone:002-102-A04, full insert sequence) A0A0N7KNG2,Q5Z8B7 A0A0N7KNG2_ORYSJ,Q5Z8B7_ORYSJ Os07g0487300 Os07g0488400 OSNPB_070487300 OSNPB_070488400,Os01g0366300 Os01g0366300 OSNPB_010366300 P0697D09.41 ENOG411E20U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) Os09g0479300 protein (cDNA clone:J033092M06, full insert sequence) Q652D8 Q652D8_ORYSJ Os09g0479300 OSNPB_090479300 P0463G11.13 ENOG411E20T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0500200 protein Q0JC02 Q0JC02_ORYSJ Os04g0500200 Os04g0500200 OSNPB_040500200 ENOG411E20W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBP domain NA NA NA NA NA NA NA ENOG411E20V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: DNA-binding bromodomain-containing protein Os09g0491660 protein (Fragment),Os05g0346000 protein,Os09g0491644 protein (Fragment) C7J735,B9FP10,A0A0P0XPR9 C7J735_ORYSJ,B9FP10_ORYSJ,A0A0P0XPR9_ORYSJ Os09g0491660 OSNPB_090491660,Os05g0346000 OsJ_18160 OSNPB_050346000,Os09g0491644 OSNPB_090491644 ENOG411E20Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain OSJNBa0088A01.20 protein (Os04g0583900 protein) Q7XUC8 Q7XUC8_ORYSJ Os04g0583900 OSJNBa0088A01.20 OSNPB_040583900 ENOG411E20P NAT4 P93039 NAT4_ARATH Nucleobase-ascorbate transporter 4 (AtNAT4) (AtPER) R-ATH-196836; 57818 Nucleobase-ascorbate transporter 4 (AtNAT4) (AtPER) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Highly expressed in the root central cylinder. Expressed in the filaments and stigmatic papillae of pollinated flowers and developing siliques. {ECO:0000269|PubMed:16982705}. locus:2031085; AT1G49960 transporter NA NA NA NA NA NA NA ENOG411E20S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWWP domain Os11g0303500 protein (Fragment) Q0IT61 Q0IT61_ORYSJ Os11g0303500 OSNPB_110303500 ENOG411E20R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain BHLH protein-like (Os02g0726700 protein) Q6Z339 Q6Z339_ORYSJ Os02g0726700 Os02g0726700 B1121A12.20 OSNPB_020726700 ENOG411E20Y Q9XIR0 Q9XIR0_ARATH At1g64850/F13O11_15 (Calcium-binding EF hand family protein) (F13O11.15 protein) 18098 At1g64850/F13O11_15 (Calcium-binding EF hand family protein) (F13O11.15 protein) plastid [GO:0009536]; calcium ion binding [GO:0005509] locus:2010821; AT1G64850 EF hand family protein OSJNBa0041A02.4 protein (OSJNBa0083N12.20 protein) (Os04g0601400 protein) (cDNA clone:J023026G02, full insert sequence) Q7X806 Q7X806_ORYSJ Os04g0601400 OsJ_16037 OSJNBa0041A02.4 OSJNBa0083N12.20 OSNPB_040601400 ENOG411E20X ZAT4,ZAT9 Q9SHD0,Q9M202 ZAT4_ARATH,ZAT9_ARATH Zinc finger protein ZAT4,Zinc finger protein ZAT9 FUNCTION: Probable transcription factor that may be involved in stress responses. {ECO:0000250}. 35854,32733 Zinc finger protein ZAT4,Zinc finger protein ZAT9 nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2055583;,locus:2103311; AT2G45120,AT3G60580 zinc finger protein Os10g0555300 protein (Zinc finger, C2H2 type family protein, expressed) Q336T7 Q336T7_ORYSJ Os10g0555300 LOC_Os10g40660 Os10g0555300 OsJ_32417 OSNPB_100555300 ENOG411E20Z NFYA4,NFYA7,NF-YA4,NF-YA7 Q8VY64,Q84JP1,A0A1P8AYC2,F4I6C2 NFYA4_ARATH,NFYA7_ARATH,A0A1P8AYC2_ARATH,F4I6C2_ARATH Nuclear transcription factor Y subunit A-4 (AtNF-YA-4),Nuclear transcription factor Y subunit A-7 (AtNF-YA-7),Nuclear factor Y, subunit A4,Nuclear factor Y, subunit A7 No obvious flowering-time phenotype. FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 22259,21300,18520,20822 Nuclear transcription factor Y subunit A-4 (AtNF-YA-4),Nuclear transcription factor Y subunit A-7 (AtNF-YA-7),Nuclear factor Y, subunit A4,Nuclear factor Y, subunit A7 CCAAT-binding factor complex [GO:0016602]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351],CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Expressed in stems, caulines, and senescent flowers. {ECO:0000269|PubMed:11250072}. locus:2061534;,locus:2028150; AT2G34720,AT1G30500 Nuclear transcription factor Y subunit HAP2 subunit of HAP complex (NF-Y transcription factor 21) (Os08g0196700 protein) (Putative CCAAT box binding factor/transcription factor Hap2a) (cDNA clone:006-208-G09, full insert sequence),CCAAT-binding transcription factor (CCAAT-binding transcription factor subunit B family protein, expressed) (HAP2 subunit of HAP complex) (NF-Y transcription factor 21) (Os10g0397900 protein),CCAAT-box transcription factor complex WHAP5, putative, expressed (HAP2 subunit of HAP complex) (NF-Y transcription factor 22) (Os12g0613000 protein) (cDNA clone:J013002C07, full insert sequence) Q6Z065,Q338K5,Q2QM93 Q6Z065_ORYSJ,Q338K5_ORYSJ,Q2QM93_ORYSJ OsHAP2A NF-Y18 Os08g0196700 OsJ_26347 OSNPB_080196700 P0035F08.38 P0412D08.16,OsHAP2I NF-Y21 Os10g0397900 LOC_Os10g25850 OSNPB_100397900,NF-Y22 OsHAP2B LOC_Os12g41880 Os12g0613000 OsJ_36853 OSNPB_120613000 ENOG411E4N7 Q84K34 SIL10_ARATH E3 ubiquitin-protein ligase SINA-like 10 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 10) (Seven in absentia-like protein 10) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5689880;R-ATH-983168; 2.3.2.27 38924 E3 ubiquitin-protein ligase SINA-like 10 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 10) (Seven in absentia-like protein 10) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2153784; AT5G37930 E3 ubiquitin-protein ligase SINA-like E3 ubiquitin-protein ligase (EC 2.3.2.27) (Fragment) A0A0P0WW04 A0A0P0WW04_ORYSJ Os06g0311300 OSNPB_060311300 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411EA42 Q9LPC2 Q9LPC2_ARATH At1g01990 (F22M8.12 protein) (Uncharacterized protein At1g01990) 27914 At1g01990 (F22M8.12 protein) (Uncharacterized protein At1g01990) locus:2025462; AT1G01990 NA NA NA NA NA NA NA NA ENOG411EA43 ABCG19 Q9M3D6 AB19G_ARATH ABC transporter G family member 19 (ABC transporter ABCG.19) (AtABCG19) (White-brown complex homolog protein 19) (AtWBC19) Slow growth on kanamycin plates. Decreased resistance to kanamycin. Sensitive to kanamycin-C. Stewart-2005 FUNCTION: Confers selective resistance to kanamycin. {ECO:0000269|PubMed:16116418}. R-ATH-1369062; 80657 ABC transporter G family member 19 (ABC transporter ABCG.19) (AtABCG19) (White-brown complex homolog protein 19) (AtWBC19) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar lumen [GO:0005775]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; antibiotic transport [GO:0042891]; vacuolar transport [GO:0007034] locus:2100641; AT3G55130 ABC-2 type transporter NA NA NA NA NA NA NA ENOG411EA4W SDT O80467 SDT_ARATH Spermidine sinapoyl-CoA acyltransferase (SDT) (Spermidine disinapoyl transferase) (EC 2.3.1.248) DISRUPTION PHENOTYPE: Impaired disinapoyl spermidine conjugates accumulation in seeds. {ECO:0000269|PubMed:19168716}. FUNCTION: Spermidine sinapoyl-CoA acyltransferase that mediates the accumulation of disinapoyl spermidine conjugates in seeds. Can also use putrescine as an acyl acceptor to convert it into monosinapoyl-putrescine. {ECO:0000269|PubMed:19168716}. PATHWAY: Amine and polyamine metabolism; spermidine metabolism. {ECO:0000269|PubMed:19168716}. ARA:AT2G23510-MONOMER; 2.3.1.248 50377 Spermidine sinapoyl-CoA acyltransferase (SDT) (Spermidine disinapoyl transferase) (EC 2.3.1.248) sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity [GO:0080089]; spermidine:sinapoyl CoA N-acyltransferase activity [GO:0080072]; polyamine biosynthetic process [GO:0006596]; spermidine metabolic process [GO:0008216] DEVELOPMENTAL STAGE: Strongly expressed in the cotyledons and emerging radical of the germinating seeds one day after imbibition. Accumulates in the root tip of young seedlings and in the cotyledons and the basal region of the hypocotyl as the seedlings emerges from the seed coat three days after imbibition. Later confined to the basal region of the hypocotyls and to the root tip before progressively disappearing. {ECO:0000269|PubMed:19168716}. TISSUE SPECIFICITY: Predominantly expressed in siliques, especially in seeds around the embryo, and, at low levels, in flowers. Barely detectable in stems, leaves, and roots. {ECO:0000269|PubMed:19168716}. locus:2046822; AT2G23510 sinapoyl spermidine sinapoyl CoA N-acyltransferase spermidine sinapoyl CoA N-acyltransferase transferase NA NA NA NA NA NA NA ENOG411ECHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411ECHU ERF055 Q9SKW5 ERF55_ARATH Ethylene-responsive transcription factor ERF055 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 34308 Ethylene-responsive transcription factor ERF055 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; regulation of transcription, DNA-templated [GO:0006355]; response to water [GO:0009415]; transcription, DNA-templated [GO:0006351] locus:2034295; AT1G36060 AP2 NA NA NA NA NA NA NA ENOG411ECHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain NA NA NA NA NA NA NA ENOG411EHAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411EHAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0145050 protein,Os04g0618800 protein A0A0P0VSZ3,A0A0P0WF24 A0A0P0VSZ3_ORYSJ,A0A0P0WF24_ORYSJ Os03g0145050 OSNPB_030145050,Os04g0618800 OSNPB_040618800 ENOG411EHAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os12g0269466 protein A0A0P0Y8W8 A0A0P0Y8W8_ORYSJ Os12g0269466 OSNPB_120269466 ENOG411EHA8 MPC Q9LT82 MPC_ARATH Maternally expressed PAB C-terminal protein (Poly(A)-binding protein-like) FUNCTION: Encodes almost entirely the C-terminal domain of poly(A)-binding proteins (PABPs). Plays a role in normal seed development and growth. {ECO:0000269|PubMed:18796636}. MISCELLANEOUS: The MPC locus is imprinted. Only the maternal inherited allele is expressed in endosperm. 11819 Maternally expressed PAB C-terminal protein (Poly(A)-binding protein-like) RNA binding [GO:0003723]; regulation of endosperm development [GO:2000014]; regulation of translation [GO:0006417]; seed morphogenesis [GO:0048317] DEVELOPMENTAL STAGE: Expressed in the central cell before fertilization and in the endosperm of seeds from the time of fertilization. TISSUE SPECIFICITY: Mainly expressed in flower buds and in siliques containing developing seeds. {ECO:0000269|PubMed:18796636}. locus:2090654; AT3G19350 Poly-adenylate binding protein unique domain NA NA NA NA NA NA NA ENOG411EHA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0147300 protein,Os06g0147250 protein Q5VP41,A0A0P0WSC1 Q5VP41_ORYSJ,A0A0P0WSC1_ORYSJ Os06g0147300 Os06g0147300 OsJ_06345 OSNPB_060147300 P0036F10.31,Os06g0147250 OSNPB_060147250 ENOG411DXU3 MYB78,MYB108,MYB112 Q9FGY3,Q9LDE1,Q94CJ3 MYB78_ARATH,MY108_ARATH,Q94CJ3_ARATH Transcription factor MYB78 (Myb-related protein 78) (AtMYB78),Transcription factor MYB108 (Myb-related protein 108) (AtMYB108) (Protein BOTRYTIS-SUSCEPTIBLE 1),MYB transcription factor (Myb domain protein 112) (Putative transcription factor MYB112) DISRUPTION PHENOTYPE: Reduced male fertility associated with delayed anther dehiscence, reduced pollen viability and decreased fecundity. Increased susceptibility to Botrytis infection. Myb24 and myb108 double mutant has a reduced fertility and a greatly reduced seed set relative to the myb108 parental allele. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}. Reduced fertility due to delayed anther dehiscence; Delayed floral organ senescence-J. Browse-2009 FUNCTION: Transcription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}. 35501,37020,28292 Transcription factor MYB78 (Myb-related protein 78) (AtMYB78),Transcription factor MYB108 (Myb-related protein 108) (AtMYB108) (Protein BOTRYTIS-SUSCEPTIBLE 1),MYB transcription factor (Myb domain protein 112) (Putative transcription factor MYB112) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to abscisic acid [GO:0009737]; response to salt [GO:1902074]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; defense response [GO:0006952]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to ethylene [GO:0009723]; response to fungus [GO:0009620]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed specifically in flowers. Restricted to anthers in maturing flowers. Strongest expression in the vascular and connective tissue where the anther attaches to the filament. Not detected in pollen. {ECO:0000269|PubMed:19091873}. locus:2157844;,locus:2084269;,locus:2202633; AT5G49620,AT3G06490,AT1G48000 Transcription factor Transcription factor MYB2 (Myb-related protein 2) (OsMYB2),Os05g0132700 protein Q10MB4,A0A0P0WHJ8 MYB2_ORYSJ,A0A0P0WHJ8_ORYSJ MYB2 Os03g0315400 LOC_Os03g20090,Os05g0132700 OSNPB_050132700 FUNCTION: Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. MISCELLANEOUS: Plants over-expressing MYB2 show increased tolerance to salt, cold, and drought stresses, and increased sensitivity to abscisic acid (ABA). {ECO:0000269|PubMed:22301384}. ENOG411DXU8 RCH1,RCH2 C0LGV1,Q9LHP4 RCH1_ARATH,RCH2_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 (EC 2.7.11.1) (Protein ROOT CLAVATA-HOMOLOG1 1),Receptor-like protein kinase 2 (EC 2.7.11.1) 2.7.11.1 123612,124504 LRR receptor-like serine/threonine-protein kinase RCH1 (EC 2.7.11.1) (Protein ROOT CLAVATA-HOMOLOG1 1),Receptor-like protein kinase 2 (EC 2.7.11.1) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; root meristem growth [GO:0010449]; viral process [GO:0016032] TISSUE SPECIFICITY: Specific to root meristems, especially in lateral root meristems (LRM). {ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:18980654}. locus:2154344;,locus:2085949; AT5G48940,AT3G24240 LRR receptor-like serine threonine-protein kinase Os04g0132500 protein (cDNA clone:001-124-H09, full insert sequence) Q0JF76 Q0JF76_ORYSJ Os04g0132500 Os04g0132500 OsJ_13640 OSNPB_040132500 ENOG411DXUF SRF8 Q6R2J8,B3H541 SRF8_ARATH,B3H541_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8 (Leucine-rich repeat receptor kinase-like protein SRF8),STRUBBELIG-receptor family 8 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17397538}. MISCELLANEOUS: Cannot functionally replace STRUBBELIG.; MISCELLANEOUS: Over-expression of SRF8 may lead to seedling lethality in both cv. Landsberg and cv. Columbia. R-ATH-446652; 76086,61183 Protein STRUBBELIG-RECEPTOR FAMILY 8 (Leucine-rich repeat receptor kinase-like protein SRF8),STRUBBELIG-receptor family 8 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17397538}. locus:2120683; AT4G22130 strubbelig-receptor family Os06g0634500 protein,Os02g0190500 protein (Putative leucine-rich repeat transmembrane protein kinase) C7J493,Q6YUU3 C7J493_ORYSJ,Q6YUU3_ORYSJ Os06g0634500 Os06g0634500 OSNPB_060634500,Os02g0190500 Os02g0190500 OsJ_05699 OSJNBb0031B09.21 OSNPB_020190500 ENOG411DXUE Q9ZU99,A0A1P8B2U5 Q9ZU99_ARATH,A0A1P8B2U5_ARATH At2g01710/T8O11.12 (Chaperone DnaJ-domain superfamily protein) (Expressed protein),Chaperone DnaJ-domain superfamily protein 34557,39556 At2g01710/T8O11.12 (Chaperone DnaJ-domain superfamily protein) (Expressed protein),Chaperone DnaJ-domain superfamily protein cytosol [GO:0005829] locus:2065393; AT2G01710 Heat shock protein DnaJ domain containing protein, expressed (Os03g0392400 protein) (Putative AT hook-containing MAR binding protein) (cDNA clone:001-206-C11, full insert sequence),AT hook-containing MAR binding protein-like (Os01g0713100 protein) Q84R00,Q8S0H7 Q84R00_ORYSJ,Q8S0H7_ORYSJ OSJNBa0065F09.12 LOC_Os03g27460 Os03g0392400 OsJ_11127 OSJNBa0093I13.1 OSNPB_030392400,Os01g0713100 B1142C05.25 OsJ_03232 OSNPB_010713100 ENOG411DXUD F4IMY0 F4IMY0_ARATH Pre-mRNA cleavage complex 2 Pcf11-like protein 105562 Pre-mRNA cleavage complex 2 Pcf11-like protein nucleic acid binding [GO:0003676] AT2G36480 Zinc finger (C2H2-type) family protein NA NA NA NA NA NA NA ENOG411DXUJ MCM6 F4KAB8,A0A1P8BEG0 MCM6_ARATH,A0A1P8BEG0_ARATH DNA replication licensing factor MCM6 (EC 3.6.4.12) (Minichromosome maintenance protein 6) (AtMCM6),DNA helicase (EC 3.6.4.12) FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69052;R-ATH-69300; Meiosis - yeast (04113),DNA replication (03030),Cell cycle - yeast (04111),Cell cycle (04110) 3.6.4.12 92851,95898 DNA replication licensing factor MCM6 (EC 3.6.4.12) (Minichromosome maintenance protein 6) (AtMCM6),DNA helicase (EC 3.6.4.12) MCM complex [GO:0042555]; THO complex [GO:0000347]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; metal ion binding [GO:0046872]; cell cycle [GO:0007049]; DNA replication initiation [GO:0006270]; DNA unwinding involved in DNA replication [GO:0006268],MCM complex [GO:0042555]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; DNA replication initiation [GO:0006270] TISSUE SPECIFICITY: Expressed in shoot apex and flower buds. {ECO:0000269|PubMed:19357199}. locus:504954997; AT5G44635 minichromosome maintenance DNA replication licensing factor MCM6 (EC 3.6.4.12) (Minichromosome maintenance protein 6) (OsMCM6) Q6F353 MCM6_ORYSJ Os05g0235800 LOC_Os05g14590 OJ1384_A02.2 OsJ_17726 OSJNBa0093E24.13 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. ENOG411DXUI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0316900 protein Q0JN83 Q0JN83_ORYSJ Os01g0316900 Os01g0316900 OSNPB_010316900 ENOG411DXUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein Q9LX06,Q5VS56 Q9LX06_ORYSJ,Q5VS56_ORYSJ P0514G12.7-1 Os06g0107600 P0644B06.51-1 OsJ_19843 OSNPB_060107600,P0644B06.51-2 Os06g0107600 P0514G12.7-2 OSNPB_060107600 ENOG411DXUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pollen tube growth Beta-glucosidase 27 (Os8bglu27) (EC 3.2.1.21),Beta-glucosidase 30 (Os9bglu30) (EC 3.2.1.21),Beta-glucosidase 28 (Os8bglu28) (EC 3.2.1.21),Beta-glucosidase 29 (Os9bglu29) (EC 3.2.1.21),Putative beta-glucosidase 35 (Os11bglu35) (EC 3.2.1.21),Os09g0491100 protein (Fragment),Os11g0184300 protein Q84YK7,Q0J0N4,Q7EXZ4,A3C053,Q53NF0,A0A0P0XP95,A0A0P0XNU4,A0A0P0Y044 BGL27_ORYSJ,BGL30_ORYSJ,BGL28_ORYSJ,BGL29_ORYSJ,BGL35_ORYSJ,A0A0P0XP95_ORYSJ,A0A0P0XNU4_ORYSJ,A0A0P0Y044_ORYSJ BGLU27 Os08g0509200 LOC_Os08g39860 B1168A08.29-1 B1168A08.29-2 OSJNBa0016N23.104-1 OSJNBa0016N23.104-2,BGLU30 Os09g0491100 LOC_Os09g31430,BGLU28 Os08g0509400 LOC_Os08g39870 B1168A08.31 OSJNBa0016N23.106,BGLU29 Os09g0490400 LOC_Os09g31410 OsJ_29835,BGLU35 Os11g0184300 Os11g0184200 LOC_Os11g08120,Os09g0491100 OSNPB_090491100,Os11g0184300 OSNPB_110184300 ENOG411DXUV JMT Q9AR07 JMT_ARATH Jasmonate O-methyltransferase (EC 2.1.1.141) (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) FUNCTION: Catalyzes the methylation of jasmonate into methyljasmonate, a plant volatile that acts as an important cellular regulator mediating diverse developmental processes and defense responses. {ECO:0000269|PubMed:11287667}. PATHWAY: Lipid metabolism; oxylipin biosynthesis. ARA:AT1G19640-MONOMER; 2.1.1.141; 2.1.1.141 43443 Jasmonate O-methyltransferase (EC 2.1.1.141) (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) cytoplasm [GO:0005737]; nucleus [GO:0005634]; jasmonate O-methyltransferase activity [GO:0030795]; methyl jasmonate methylesterase activity [GO:0102078]; jasmonic acid metabolic process [GO:0009694]; oxylipin biosynthetic process [GO:0031408]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in rosettes, cauline leaves and developing flowers but not in young seedlings. {ECO:0000269|PubMed:11287667}. locus:2013149; AT1G19640 Jasmonate NA NA NA NA NA NA NA ENOG411DXUZ MUG3 Q9M9Y2 Q9M9Y2_ARATH At1g06740 (F4H5.17 protein) (MuDR family transposase) (MudrA-like protein) 82360 At1g06740 (F4H5.17 protein) (MuDR family transposase) (MudrA-like protein) zinc ion binding [GO:0008270] Pfam:MuDR Os01g0595300 protein (Fragment) Q0JLJ6 Q0JLJ6_ORYSJ Os01g0595300 Os01g0595300 OSNPB_010595300 ENOG411DXUY RH58 Q3E9C3 RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, chloroplastic (EC 3.6.4.13) 3.6.4.13 52811 DEAD-box ATP-dependent RNA helicase 58, chloroplastic (EC 3.6.4.13) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2182202; AT5G19210 DEAD-box ATP-dependent RNA helicase 58 DEAD-box ATP-dependent RNA helicase 58, chloroplastic (EC 3.6.4.13),Os01g0970600 protein (Fragment) Q0JFN7,A0A0P0VDB4 RH58_ORYSJ,A0A0P0VDB4_ORYSJ Os01g0970600 LOC_Os01g73900 OsJ_024578 P0518C01.3,Os01g0970600 OSNPB_010970600 ENOG411DXUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0273700 protein A0A0N7KN90 A0A0N7KN90_ORYSJ Os07g0273700 OSNPB_070273700 ENOG411DVCC PHO1,PHO1-H1,PHO1;H1 Q8S403,Q93ZF5,A0A1P8ATD3 PHO1_ARATH,PHO11_ARATH,A0A1P8ATD3_ARATH Phosphate transporter PHO1 (Protein PHO1) (AtPHO1),Phosphate transporter PHO1 homolog 1 (Protein PHO1 homolog 1) (AtPHO1;H1),EXS (ERD1/XPR1/SYG1) family protein DISRUPTION PHENOTYPE: Strong reduction in plant size and biomass. Severe deficiency in shoot Pi level, but normal root Pi content. {ECO:0000269|PubMed:11971143, ECO:0000269|PubMed:17461783}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17461783}. Strong reduction in growth and in the capacity to transfer phosphate (Pi) from the root to shoot compared with pho1.,T-DNA knock-out mutants of PHO1;H1 neither showed growth defects nor alteration in phosphate (Pi) transport dynamics or Pi content compared with wild type.,Vegetative growth of the mutant appears to be comparable with wild type for plants grown in soil although the mutant has flowers with smaller petals and reduced fertility. The abnormal flower phenotype has been reported to occur in a fraction of the transgenic plants derived from the Madison collection and is thought to be linked to the presence of an AP1 sequence in the T-DNA. Reduced phosphate transport in roots-Y. Poirier-2002 FUNCTION: Inositol polyphosphate sensor that associates with transcription factors to regulate inorganic phosphate (Pi) starvation responses (PubMed:27080106). Probably acts by binding inositol polyphosphate via its SPX domain (PubMed:27080106). Acts as a Pi exporter, mediating efflux of Pi out of cells (PubMed:21309867, PubMed:22449068). Transfers Pi from the epidermal and cortical cells to the root xylem vessels (PubMed:11971143). Involved in the transfer of Pi from roots to shoots (PubMed:11971143, PubMed:17461783). Involved in abscisic acid (ABA) induction of stomatal closure and ABA repression of stomatal opening (PubMed:22612335). {ECO:0000269|PubMed:11971143, ECO:0000269|PubMed:17461783, ECO:0000269|PubMed:21309867, ECO:0000269|PubMed:22449068, ECO:0000269|PubMed:22612335, ECO:0000269|PubMed:27080106}.,FUNCTION: Contributes to the loading of inorganic phosphate (Pi) into the root xylem vessels. {ECO:0000269|PubMed:17461783}. MISCELLANEOUS: Pi content in shoot of pho1 mutant can be restored to wild-type levels after treatment with cytokinins. 90537,90711,83535 Phosphate transporter PHO1 (Protein PHO1) (AtPHO1),Phosphate transporter PHO1 homolog 1 (Protein PHO1 homolog 1) (AtPHO1;H1),EXS (ERD1/XPR1/SYG1) family protein endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; inositol hexakisphosphate binding [GO:0000822]; phosphate ion transmembrane transporter activity [GO:0015114]; cellular response to phosphate starvation [GO:0016036]; inositol phosphate-mediated signaling [GO:0048016]; polyphosphate biosynthetic process [GO:0006799],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; cellular response to phosphate starvation [GO:0016036]; phosphate ion transport [GO:0006817],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Predominantly in roots, but also weak expression in the lower part of the hypocotyl (PubMed:11971143). In the stellar cells, including the pericycle and xylem parenchyma cells, but not in the cortical or epidermal cells (PubMed:11971143). Expressed in guard cells (PubMed:22612335). {ECO:0000269|PubMed:11971143, ECO:0000269|PubMed:22612335}.,TISSUE SPECIFICITY: Expressed in vascular cylinder of roots, leaves, stems, petals, sepals and filaments. Expressed in receptacle, stigma apex and anther connective tissue. {ECO:0000269|PubMed:15122012, ECO:0000269|PubMed:17461783}. locus:2090930;,locus:2012458; AT3G23430,AT1G68740 phosphate transporter Phosphate transporter PHO1-1 (Protein PHO1-1) (OsPHO1;1),Phosphate transporter PHO1-2 (Protein PHO1-2) (OsPHO1;2),Phosphate transporter PHO1-3 (Protein PHO1-3) (OsPHO1;3) Q657S5,Q6K991,Q651J5 PHO11_ORYSJ,PHO12_ORYSJ,PHO13_ORYSJ PHO1-1 Os01g0110100 LOC_Os01g02000 P0439B06.4 P0482C06.38,PHO1-2 Os02g0809800 LOC_Os02g56510 OJ1112_G06.31 OJ1520_C09.43 OsJ_08812,PHO1-3 Os06g0493600 LOC_Os06g29790 B1423D04.17 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20081045}.,DISRUPTION PHENOTYPE: Strong decrease in root and shoot biomass and Pi content. 25-fold reduction in Pi transfer from roots to shoots. {ECO:0000269|PubMed:20081045}. FUNCTION: May transport inorganic phosphate (Pi). {ECO:0000250}.,FUNCTION: Involved in the transfer of inorganic phosphate (Pi) from roots to shoots. {ECO:0000269|PubMed:20081045}. ENOG411DVCB F27H5_130,MQL5.21,MQL5.19 Q9LY31,Q9LVS4,Q9LVS6 Q9LY31_ARATH,Q9LVS4_ARATH,Q9LVS6_ARATH AT3G60340 protein (Alpha/beta-Hydrolases superfamily protein) (Palmitoyl-protein thioesterase-like) (Putative palmitoyl-protein thioesterase),Alpha/beta-Hydrolases superfamily protein (Palmitoyl-protein thioesterase-like) (Uncharacterized protein At5g47350),Alpha/beta-Hydrolases superfamily protein (At5g47330) (Palmitoyl-protein thioesterase-like) ARA:AT3G60340-MONOMER;,ARA:AT5G47350-MONOMER;,ARA:AT5G47330-MONOMER; R-ATH-75105; 37084,34696,34530 AT3G60340 protein (Alpha/beta-Hydrolases superfamily protein) (Palmitoyl-protein thioesterase-like) (Putative palmitoyl-protein thioesterase),Alpha/beta-Hydrolases superfamily protein (Palmitoyl-protein thioesterase-like) (Uncharacterized protein At5g47350),Alpha/beta-Hydrolases superfamily protein (At5g47330) (Palmitoyl-protein thioesterase-like) cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; vacuole [GO:0005773]; palmitoyl hydrolase activity [GO:0098599]; thiolester hydrolase activity [GO:0016790],intracellular membrane-bounded organelle [GO:0043231]; palmitoyl hydrolase activity [GO:0098599]; thiolester hydrolase activity [GO:0016790] locus:2081942;,locus:2171599;,locus:2171554; AT3G60340,AT5G47350,AT5G47330 Palmitoyl-protein thioesterase Os10g0563000 protein (Palmitoyl protein thioesterase containing protein, expressed) (cDNA clone:J023126M16, full insert sequence),Os03g0101100 protein (Palmitoyl protein thioesterase containing protein, expressed) (cDNA clone:J023022G01, full insert sequence) Q336S3,Q10T53 Q336S3_ORYSJ,Q10T53_ORYSJ LOC_Os10g41340 Os10g0563000 OsJ_32474 OSNPB_100563000,Os03g0101100 LOC_Os03g01150 Os03g0101100 OsJ_09054 OSNPB_030101100 ENOG411DVCA P4H1,AT-P4H-1 Q9ZW86,A0A1P8AZF5 P4H1_ARATH,A0A1P8AZF5_ARATH Prolyl 4-hydroxylase 1 (AtP4H-1) (AtP4H1) (EC 1.14.11.2),P4H isoform 1 FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxylates preferentially prolines in second positions in the -Pro-Pro-Gly-triplets. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. Can hydroxylate collagen-like peptides and hypoxia-inducible transcription factor peptides. {ECO:0000269|PubMed:11976332, ECO:0000269|PubMed:19277739}. MISCELLANEOUS: Plants over-expressing P4H1 show absence of trichome on leaf and petal surfaces, increased root hair and reduction in seed size. {ECO:0000305|PubMed:19277739}. ARA:AT2G43080-MONOMER; 1.14.11.2; 1.14.11.2 31530,21250 Prolyl 4-hydroxylase 1 (AtP4H-1) (AtP4H1) (EC 1.14.11.2),P4H isoform 1 endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656]; peptidyl-proline hydroxylation to 4-hydroxy-L-proline [GO:0018401] locus:2041001; AT2G43080 prolyl 4-hydroxylase OSJNBb0085H11.11 protein (Os04g0346000 protein) (cDNA clone:002-113-D10, full insert sequence) Q7XNS6 Q7XNS6_ORYSJ Os04g0346000 OsJ_14349 OSJNBb0085H11.11 OSNPB_040346000 ENOG411DVCZ RAD50 Q9SL02 RAD50_ARATH DNA repair protein RAD50 (AtRAD50) (EC 3.6.-.-) High levels of double-strand breaks.,Hyperaccumulation of AtSPO11-1 in meiocytes.,Sterile produces numerous flowers but small empty siliques. Completely sterile due to defects in meiosis; Short telomeres; Dwarf when grown on nutrient plates; Sensitive to genotoxic stress-C. White-2001 FUNCTION: Implicated in double-strand breaks (DSBs) repair by non-homologous end joining (NHEJ). Involved in telomere maintenance. Involved in telomerase action on chromosome ends. Required during meiosis for both male and female gametophytic development, for pairing and synapsis of homologous chromosomes during the early stages of meiotic recombination, especially during the pachytene stage of the first division. {ECO:0000269|PubMed:11169180, ECO:0000269|PubMed:11172016, ECO:0000269|PubMed:11306548, ECO:0000269|PubMed:15309561}. R-ATH-2559586;R-ATH-5685939;R-ATH-5693548;R-ATH-5693565;R-ATH-5693607;R-ATH-5693616; 3.6.-.- 152815 DNA repair protein RAD50 (AtRAD50) (EC 3.6.-.-) condensed nuclear chromosome [GO:0000794]; cytoplasm [GO:0005737]; Mre11 complex [GO:0030870]; nuclear chromatin [GO:0000790]; nuclear chromosome, telomeric region [GO:0000784]; nucleus [GO:0005634]; site of double-strand break [GO:0035861]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; double-stranded telomeric DNA binding [GO:0003691]; G-quadruplex DNA binding [GO:0051880]; metal ion binding [GO:0046872]; single-stranded telomeric DNA binding [GO:0043047]; chromosome organization involved in meiotic cell cycle [GO:0070192]; DNA duplex unwinding [GO:0032508]; double-strand break repair [GO:0006302]; double-strand break repair via homologous recombination [GO:0000724]; mitotic recombination [GO:0006312]; nucleic acid phosphodiester bond hydrolysis [GO:0090305]; reciprocal meiotic recombination [GO:0007131]; telomere capping [GO:0016233]; telomere maintenance [GO:0000723]; telomere maintenance via recombination [GO:0000722]; telomere maintenance via telomerase [GO:0007004] TISSUE SPECIFICITY: Widely expressed, predominantly in meristematic and reproductive tissues. {ECO:0000269|PubMed:11169180}. locus:2045437; AT2G31970 DNA repair protein Os02g0497500 protein (Fragment),Os02g0497500 protein A0A0P0VJ82,A0A0P0VJ93 A0A0P0VJ82_ORYSJ,A0A0P0VJ93_ORYSJ Os02g0497500 OSNPB_020497500 ENOG411DVCY CIPK3,CIPK26 Q2V452,Q84VQ3,F4IVM7,F4IVM9 CIPK3_ARATH,CIPKQ_ARATH,F4IVM7_ARATH,F4IVM9_ARATH CBL-interacting serine/threonine-protein kinase 3 (EC 2.7.11.1) (SNF1-related kinase 3.17) (SOS2-like protein kinase PKS12),CBL-interacting serine/threonine-protein kinase 26 (EC 2.7.11.1) (SNF1-related kinase 3.26) (SOS2-like protein kinase PKS26),Non-specific serine/threonine protein kinase (EC 2.7.11.1) FUNCTION: Involved in the resistance to some abiotic stresses (e.g. high salt, hyperosmotic stress) in young seedlings, by regulating the expression of several stress-inducible genes (cold- and salt-induced genes but not drought-responsive genes). Required for the ABA response during germination. CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. The CBL9/CIPK3 complex acts in the regulation of abscisic acid response in seed germination. {ECO:0000269|PubMed:12566581, ECO:0000269|PubMed:19825536}.,FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Involved in the calcium-dependent regulation of reactive oxygen species production by the NADPH oxidase RBOHF. {ECO:0000269|PubMed:23335733}. 2.7.11.1 50600,49629,51823,48669 CBL-interacting serine/threonine-protein kinase 3 (EC 2.7.11.1) (SNF1-related kinase 3.17) (SOS2-like protein kinase PKS12),CBL-interacting serine/threonine-protein kinase 26 (EC 2.7.11.1) (SNF1-related kinase 3.26) (SOS2-like protein kinase PKS26),Non-specific serine/threonine protein kinase (EC 2.7.11.1) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; response to abscisic acid [GO:0009737]; response to cytokinin [GO:0009735],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Mostly expressed in germinating seeds and young seedlings. Detected at low levels in roots, stems, leaves and flowers. {ECO:0000269|PubMed:12566581}. locus:1005716172;,locus:2059279; AT2G26980,AT5G21326 Cbl-interacting protein kinase Os12g0132200 protein A0A0P0Y6X8,A0A0P0Y6X1 A0A0P0Y6X8_ORYSJ,A0A0P0Y6X1_ORYSJ Os12g0132200 OSNPB_120132200 ENOG411DVCR F12A12.60 Q9SNC4,A0A1I9LT14,A0A1I9LT15 Q9SNC4_ARATH,A0A1I9LT14_ARATH,A0A1I9LT15_ARATH ENTH/VHS family protein (Uncharacterized protein At3g46540) (Uncharacterized protein At3g46540; F12A12.60) (Uncharacterized protein F12A12.60),ENTH/VHS family protein 34766,29345,33426 ENTH/VHS family protein (Uncharacterized protein At3g46540) (Uncharacterized protein At3g46540; F12A12.60) (Uncharacterized protein F12A12.60),ENTH/VHS family protein locus:2075180; AT3G46540 ENTH domain Os01g0841000 protein (cDNA clone:001-030-E07, full insert sequence) Q5N9U6 Q5N9U6_ORYSJ P0408C03.31-1 Os01g0841000 OsJ_04029 OSNPB_010841000 ENOG411DVCQ PCO2,MYH19.8 Q8LGJ5,A0A1P8BCH5 PCO2_ARATH,A0A1P8BCH5_ARATH Plant cysteine oxidase 2 (EC 1.13.11.20),2-aminoethanethiol dioxygenase, putative (DUF1637) FUNCTION: Oxidizes N-terminal cysteine residues, thus preparing the protein for N-end rule pathway-mediated proteasomal degradation. Controls the preparation of ERF-VII proteins for degradation via the 26S proteasome. Not active on Cys located inside or at the C-terminus of a peptide. Represses the anaerobic response. {ECO:0000269|PubMed:24599061}. R-ATH-1614558; 1.13.11.20 30820,27795 Plant cysteine oxidase 2 (EC 1.13.11.20),2-aminoethanethiol dioxygenase, putative (DUF1637) cytosol [GO:0005829]; nucleus [GO:0005634]; cysteine dioxygenase activity [GO:0017172]; metal ion binding [GO:0046872]; detection of hypoxia [GO:0070483]; peptidyl-cysteine oxidation [GO:0018171]; response to hypoxia [GO:0001666],oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702] DEVELOPMENTAL STAGE: Expressed throughout development, with the highest expression in mature siliques and during seed germination. {ECO:0000269|PubMed:24599061}. locus:2178032; AT5G39890 2-aminoethanethiol Os01g0185500 protein A0A0P0UZ10 A0A0P0UZ10_ORYSJ Os01g0185500 OSNPB_010185500 ENOG411DVCP B9DFA5,F4KI84,A0A1P8BFE6,A0A1P8BFF4 B9DFA5_ARATH,F4KI84_ARATH,A0A1P8BFE6_ARATH,A0A1P8BFF4_ARATH AT5G10630 protein (Translation elongation factor EF1A/initiation factor IF2gamma family protein),Translation elongation factor EF1A/initiation factor IF2gamma family protein ARA:GQT-785-MONOMER; R-ATH-429958; 72299,72428,80004,80599 AT5G10630 protein (Translation elongation factor EF1A/initiation factor IF2gamma family protein),Translation elongation factor EF1A/initiation factor IF2gamma family protein GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743],intracellular [GO:0005622]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743] locus:2142469; AT5G10630 Elongation factor Os04g0677800 protein,Os04g0595300 protein (Os04g0596500 protein) (cDNA clone:J023111K09, full insert sequence),Os01g0116600 protein (Fragment) Q0J905,Q0JAJ0,A0A0P0UXG8,A0A0N7KC82,A0A0P0WGG4 Q0J905_ORYSJ,Q0JAJ0_ORYSJ,A0A0P0UXG8_ORYSJ,A0A0N7KC82_ORYSJ,A0A0P0WGG4_ORYSJ Os04g0677800 Os04g0677800 OSNPB_040677800,Os04g0596500 Os04g0595300 OsJ_16005 OSNPB_040596500,Os01g0116600 OSNPB_010116600,Os04g0677800 OSNPB_040677800 ENOG411DVCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os12g0610600 protein (Salicylic acid-induced protein 19, putative, expressed) Q2QMB5 Q2QMB5_ORYSJ LOC_Os12g41680 Os12g0610600 OsJ_36832 OSNPB_120610600 ENOG411DVC8 EMB86,EMB1030 Q9FFC7,A0A1P8BCC6 SYAP_ARATH,A0A1P8BCC6_ARATH Alanine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) (Protein EMBRYO DEFECTIVE 1030) (Protein EMBRYO DEFECTIVE 263) (Protein EMBRYO DEFECTIVE 86),Probable alanine--tRNA ligase, chloroplastic (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at early cotyledon stage. {ECO:0000305|PubMed:16297076}. Embryo defective; Transition-D. Meinke-2007 FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. {ECO:0000255|HAMAP-Rule:MF_03134}.,FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. {ECO:0000256|HAMAP-Rule:MF_03134}. ARA:AT5G22800-MONOMER; 6.1.1.7 107830,111075 Alanine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) (Protein EMBRYO DEFECTIVE 1030) (Protein EMBRYO DEFECTIVE 263) (Protein EMBRYO DEFECTIVE 86),Probable alanine--tRNA ligase, chloroplastic (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrion [GO:0005739]; alanine-tRNA ligase activity [GO:0004813]; amino acid binding [GO:0016597]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; tRNA binding [GO:0000049]; alanyl-tRNA aminoacylation [GO:0006419]; embryo development ending in seed dormancy [GO:0009793]; tRNA modification [GO:0006400],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; alanine-tRNA ligase activity [GO:0004813]; ATP binding [GO:0005524]; tRNA binding [GO:0000049]; zinc ion binding [GO:0008270]; alanyl-tRNA aminoacylation [GO:0006419] locus:504954871; AT5G22800 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain (By similarity) Alanine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS),Os06g0245800 protein B9FSH5,A0A0N7KLU9 SYAP_ORYSJ,A0A0N7KLU9_ORYSJ Os06g0245800 LOC_Os06g13660 OJ1136_C11.1 OsJ_20798,Os06g0245800 OSNPB_060245800 FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. {ECO:0000255|HAMAP-Rule:MF_03134}. ENOG411DVC3 HEC2 Q9SND4 HEC2_ARATH Transcription factor HEC2 (Basic helix-loop-helix protein 37) (AtbHLH37) (bHLH 37) (Protein HECATE 2) (Transcription factor EN 117) (bHLH transcription factor bHLH037) DISRUPTION PHENOTYPE: Impaired pollen tube growth. {ECO:0000269|PubMed:17855426}. FUNCTION: Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. 25684 Transcription factor HEC2 (Basic helix-loop-helix protein 37) (AtbHLH37) (bHLH 37) (Protein HECATE 2) (Transcription factor EN 117) (bHLH transcription factor bHLH037) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel formation [GO:0048462]; ovary septum development [GO:0080126]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; transmitting tissue development [GO:0010500] DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. TISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}. locus:2074865; AT3G50330 Transcription factor BHLH protein family-like (Os08g0471401 protein) Q6Z9R3 Q6Z9R3_ORYSJ Os08g0471401 OsJ_27638 OSNPB_080471401 P0461F06.33 ENOG411EAEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dihydrouridine synthase (Dus) NA NA NA NA NA NA NA ENOG411EETW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0203400 protein (Fragment) A0A0P0W7C7 A0A0P0W7C7_ORYSJ Os04g0203400 OSNPB_040203400 ENOG411DT13 F16L2_160 O23174,Q9SHY8,Q9LZT6 SLU7B_ARATH,SLU7A_ARATH,Q9LZT6_ARATH Pre-mRNA-splicing factor SLU7-B,Pre-mRNA-splicing factor SLU7-A,Pre-mRNA splicing Prp18-interacting factor (Uncharacterized protein F16L2_160) Segregating populations will show occasional reversion (ca. 40% in some lines)-otherwise segregates 3:1 wt:mutant. Reduced leaf venation serrated leaves reduced stature narrow organs reduced fertility. Reduced cell numbers but cells have increased size. FUNCTION: Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. {ECO:0000250}. 62056,61978,44159 Pre-mRNA-splicing factor SLU7-B,Pre-mRNA-splicing factor SLU7-A,Pre-mRNA splicing Prp18-interacting factor (Uncharacterized protein F16L2_160) spliceosomal complex [GO:0005681]; metal ion binding [GO:0046872]; single-stranded RNA binding [GO:0003727]; mRNA processing [GO:0006397]; positive regulation of cell proliferation [GO:0008284]; RNA splicing [GO:0008380]; RNA splicing, via transesterification reactions [GO:0000375],spliceosomal complex [GO:0005681]; RNA splicing, via transesterification reactions [GO:0000375] locus:2115115;,locus:2018496;,locus:2077157; AT4G37120,AT1G65660,AT3G45950 pre-mRNA-splicing factor Pre-mRNA-splicing factor SLU7 Q6ZK48 SLU7_ORYSJ Os08g0127700 LOC_Os08g03390 OJ1163_G08.29 OsJ_024869 OsJ_25904 FUNCTION: Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. {ECO:0000250}. ENOG411DT12 KIN14G,KIN14I,KIN14H O81635,F4IL57,F4HZF0,A0A1P8ATG3,A0A1P8ATE2,A0A1P8ATH5,A0A1P8B319,A0A1P8ATI1,A0A1P8ATF3 KN14G_ARATH,KN14I_ARATH,KN14H_ARATH,A0A1P8ATG3_ARATH,A0A1P8ATE2_ARATH,A0A1P8ATH5_ARATH,A0A1P8B319_ARATH,A0A1P8ATI1_ARATH,A0A1P8ATF3_ARATH Kinesin-like protein KIN-14G (Kinesin-like protein KatD),Kinesin-like protein KIN-14I,Kinesin-like protein KIN-14H,Kinesin-like protein,P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein,p-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein FUNCTION: Microtubule-binding motor protein. ARA:AT5G27000-MONOMER;,ARA:GQT-2105-MONOMER;,ARA:GQT-2787-MONOMER; 110009,108779,114914,81848,90569,99145,104460,115557,93656 Kinesin-like protein KIN-14G (Kinesin-like protein KatD),Kinesin-like protein KIN-14I,Kinesin-like protein KIN-14H,Kinesin-like protein,P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein,p-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] TISSUE SPECIFICITY: Flower specific. {ECO:0000269|PubMed:10196470}. locus:2148543;,locus:2061992;,locus:2195316; AT5G27000,AT2G47500,AT1G09170 K10406 kinesin family member C2 C3 Kinesin-like protein KIN-14F,Kinesin-like protein KIN-14C,Kinesin-like protein KIN-14K Q10MN5,Q5JKW1,B9FL70 KN14F_ORYSJ,KN14C_ORYSJ,KN14K_ORYSJ KIN14F Os03g0301800 LOC_Os03g18980 OsJ_10528,KIN14C Os01g0744000 LOC_Os01g54080 OSJNBa0014K08.6 P0439E07.39,KIN14K Os05g0521300 LOC_Os05g44560 OsJ_19246 P0483D07.17 ENOG411DT11 FTSHI1 O22993 FTSI1_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic (AtFTSHI1) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 1) (Protein ARC1) (Protein FTSH INACTIVE PROTEASE 1) DISRUPTION PHENOTYPE: Embryo defective. {ECO:0000269|PubMed:22900897, ECO:0000269|PubMed:24964212}. Defective in chloroplast accumulation and division. Reduced number of chloroplasts and affected division plane in chloroplast biogenesis. Highly enlongated and multiple arrayed chloroplasts in developing green tissues. Mutant proteins do not form homodimers as wt proteins do and localize aberrantly inside chloroplasts. FUNCTION: Functions in chloroplast biogenesis and chloroplast division (PubMed:10417716, PubMed:22900897). Required for plastid development during embryogenesis (PubMed:22900897, PubMed:24964212). Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex (PubMed:12185496). {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:22900897, ECO:0000269|PubMed:24964212, ECO:0000303|PubMed:12185496}. 105543 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic (AtFTSHI1) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 1) (Protein ARC1) (Protein FTSH INACTIVE PROTEASE 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; chloroplast fission [GO:0010020]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; plastid fission [GO:0043572]; proteolysis [GO:0006508] locus:2138146; AT4G23940 Peptidase family M41 NA NA NA NA NA NA NA ENOG411DT10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA inactive purple acid phosphatase 27-like Purple acid phosphatase (EC 3.1.3.2) Q8S2H5 Q8S2H5_ORYSJ P0003D09.8-1 P0691E06.40-1 Os01g0800500 OSNPB_010800500 ENOG411DT17 CYP76C3,CYP93D1 O64638,Q9FL56,A0A1P8AXT7 C76C3_ARATH,Q9FL56_ARATH,A0A1P8AXT7_ARATH Cytochrome P450 76C3 (EC 1.14.-.-),Cytochrome P450 (Cytochrome P450, family 93, subfamily D, polypeptide 1),Cytochrome P450, family 76, subfamily C, polypeptide 3 ARA:AT2G45580-MONOMER;,ARA:AT5G06900-MONOMER; 1.14.-.- 58143,57480,45866 Cytochrome P450 76C3 (EC 1.14.-.-),Cytochrome P450 (Cytochrome P450, family 93, subfamily D, polypeptide 1),Cytochrome P450, family 76, subfamily C, polypeptide 3 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2043614;,locus:2169434; AT2G45580,AT5G06900 cytochrome P450 Os06g0613600 protein (Putative cytochrome P450) Q69WX6 Q69WX6_ORYSJ Os06g0613600 Os06g0613600 OSNPB_060613600 P0417G12.20 ENOG411DT16 ATHB-17,HB17 Q8S9N6,A0A1P8B175 ATB17_ARATH,A0A1P8B175_ARATH Homeobox-leucine zipper protein ATHB-17 (HD-ZIP protein ATHB-17) (Homeodomain transcription factor ATHB-17),Homeobox-leucine zipper protein 17 FUNCTION: Probable transcription factor. {ECO:0000250}. 31690,24626 Homeobox-leucine zipper protein ATHB-17 (HD-ZIP protein ATHB-17) (Homeodomain transcription factor ATHB-17),Homeobox-leucine zipper protein 17 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2049614; AT2G01430 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX3 (HD-ZIP protein HOX3) (Homeodomain transcription factor HOX3) (OsHox3),Os05g0576850 protein Q0JKX1,B9FLR4 HOX3_ORYSJ,B9FLR4_ORYSJ HOX3 Os01g0643600 LOC_Os01g45570 OsJ_002698,Os05g0576850 OsJ_19652 OSNPB_050576850 FUNCTION: Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. ENOG411DT15 Q93W03,B9DFB7,F4IY77,A0A1I9LT30,F4IY75 Q93W03_ARATH,B9DFB7_ARATH,F4IY77_ARATH,A0A1I9LT30_ARATH,F4IY75_ARATH AT3g56130/F18O21_90 (Biotin/lipoyl attachment domain-containing protein),AT3G56130 protein (Biotin/lipoyl attachment domain-containing protein),Biotin/lipoyl attachment domain-containing protein 29576,21781,20741,26037,29542 AT3g56130/F18O21_90 (Biotin/lipoyl attachment domain-containing protein),AT3G56130 protein (Biotin/lipoyl attachment domain-containing protein),Biotin/lipoyl attachment domain-containing protein chloroplast [GO:0009507]; negative regulation of fatty acid biosynthetic process [GO:0045717] locus:2078401; AT3G56130 Biotin carboxyl carrier protein of acetyl-CoA NA NA NA NA NA NA NA ENOG411DT14 REV Q9SE43 REV_ARATH Homeobox-leucine zipper protein REVOLUTA (HD-ZIP protein REV) (Homeodomain transcription factor REV) (Protein AMPHIVASAL VASCULAR BUNDLE 1) (Protein INTERFASCICULAR FIBERLESS 1) DISRUPTION PHENOTYPE: Plants display strongly reduced auxin polar transport in inflorescence stems and hypocotyls. This phenotype is probably due to altered cell differentiation and morphology. {ECO:0000269|PubMed:11402186}. Altered leaf morphology; Complete loss of auxiliary inflorescences-S. Clark-2001 FUNCTION: Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. 92438 Homeobox-leucine zipper protein REVOLUTA (HD-ZIP protein REV) (Homeodomain transcription factor REV) (Protein AMPHIVASAL VASCULAR BUNDLE 1) (Protein INTERFASCICULAR FIBERLESS 1) nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; determination of bilateral symmetry [GO:0009855]; meristem initiation [GO:0010014]; polarity specification of adaxial/abaxial axis [GO:0009944]; radial pattern formation [GO:0009956]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051]; xylem development [GO:0010089] DEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}. TISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}. locus:2175856; AT5G60690 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX9 (HD-ZIP protein HOX9) (Homeodomain transcription factor HOX9) (OsHB2) (OsHox9),Homeobox-leucine zipper protein HOX10 (HD-ZIP protein HOX10) (Homeodomain transcription factor HOX10) (OsHB1) (OsHox10),Homeobox domain containing protein, expressed (Os03g0769800 protein) (Putative homeodomain leucine-zipper protein Hox9) (cDNA clone:J023060H19, full insert sequence),Os10g0480200 protein (Fragment),Os03g0109400 protein,Os03g0109400 protein (Fragment) Q9AV49,Q6TAQ6,Q6AU46,A0A0P0XVC4,A0A0N7KGF9,A0A0P0VS14 HOX9_ORYSJ,HOX10_ORYSJ,Q6AU46_ORYSJ,A0A0P0XVC4_ORYSJ,A0A0N7KGF9_ORYSJ,A0A0P0VS14_ORYSJ HOX9 HB2 Os10g0480200 LOC_Os10g33960 OSJNBa0093B11.11,HOX10 HB1 Os03g0109400 LOC_Os03g01890 OsJ_008792 OSJNBb0043C10.12,LOC_Os03g55990 Os03g0769800 OSJNBa0072F13.15 OSNPB_030769800,Os10g0480200 OSNPB_100480200,Os03g0109400 OSNPB_030109400 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DT19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydroxyproline-rich glycoprotein family protein, putative, expressed (Os12g0224500 protein) (cDNA clone:001-117-G03, full insert sequence) Q2QVM6 Q2QVM6_ORYSJ LOC_Os12g12300 Os12g0224500 OSNPB_120224500 ENOG411DT18 Q56W64 ASPG3_ARATH Probable isoaspartyl peptidase/L-asparaginase 3 (EC 3.4.19.5) (L-asparagine amidohydrolase 3) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 3 subunit alpha; Isoaspartyl peptidase/L-asparaginase 3 subunit beta] FUNCTION: Acts in asparagine catabolism but also in the final steps of protein degradation via hydrolysis of a range of isoaspartyl dipeptides. {ECO:0000250}. ARA:AT5G61540-MONOMER; R-ATH-6798695; 3.4.19.5 38249 Probable isoaspartyl peptidase/L-asparaginase 3 (EC 3.4.19.5) (L-asparagine amidohydrolase 3) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 3 subunit alpha; Isoaspartyl peptidase/L-asparaginase 3 subunit beta] beta-aspartyl-peptidase activity [GO:0008798] locus:2151626; AT5G61540 isoaspartyl peptidase L-asparaginase Os04g0549300 protein (cDNA clone:001-113-E10, full insert sequence) Q0JB91 Q0JB91_ORYSJ Os04g0549300 Os04g0549300 OsJ_15685 OSNPB_040549300 ENOG411DT1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain-containing protein NAC domain-containing protein 74 (ONAC074) (OsNAC8),Os01g0261200 protein (Fragment) Q7GCL7,A0A0P0V0S6 NAC74_ORYSJ,A0A0P0V0S6_ORYSJ NAC074 NAC8 Os01g0261200 LOC_Os01g15640 OsJ_01182 P0469E09.5 P0699D11.24,Os01g0261200 OSNPB_010261200 FUNCTION: Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. ENOG411DT1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May act as a scaffolding protein within caveolar membranes functionally participating in formation of caveolae or caveolae-like vesicles (By similarity) Flotillin-like protein 1 (Nodulin-like protein 1),Flotillin-like protein 2 (Nodulin-like protein 2),Flotillin-like protein 3 (Nodulin-like protein 3),Os10g0482450 protein,Os10g0482700 protein Q9AV57,Q8LNW4,Q8LNW6,A0A0P0XVF1,A0A0P0XVU4 FLOT1_ORYSJ,FLOT2_ORYSJ,FLOT3_ORYSJ,A0A0P0XVF1_ORYSJ,A0A0P0XVU4_ORYSJ FLOT1 Os10g0481500 LOC_Os10g34040 OsJ_31920 OSJNBa0012L23.36 OSJNBa0093B11.7,FLOT2 Os10g0482700 LOC_Os10g34150 OsJ_31925 OSJNBa0012L23.46,FLOT3 LOC_Os10g34130 OsJ_31923 OSJNBa0012L23.44,Os10g0482450 OSNPB_100482450,Os10g0482700 OSNPB_100482700 FUNCTION: May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles. {ECO:0000250}. ENOG411DT1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative, expressed (Os11g0514500 protein) (cDNA, clone: J100084L14, full insert sequence),Os11g0514700 protein Q2R3L3,A0A0N7KSZ4 Q2R3L3_ORYSJ,A0A0N7KSZ4_ORYSJ Os11g0514500 LOC_Os11g31540 OsJ_34033 OSNPB_110514500,Os11g0514700 OSNPB_110514700 ENOG411DT1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication Retinoblastoma-related protein 2 (OsRBR2) Q2R374 RBR2_ORYSJ RBR2 Os11g0533500 LOC_Os11g32900 OsJ_34123 FUNCTION: Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity). {ECO:0000250}. ENOG411DT1F Q9LT86,Q9FXA0,F4JQJ7 Q9LT86_ARATH,Q9FXA0_ARATH,F4JQJ7_ARATH MAP3K protein kinase-like protein (PLC-like phosphodiesterases superfamily protein),F14J22.5 protein (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein At1g49740),PLC-like phosphodiesterases superfamily protein 45861,39826,44332 MAP3K protein kinase-like protein (PLC-like phosphodiesterases superfamily protein),F14J22.5 protein (PLC-like phosphodiesterases superfamily protein) (Uncharacterized protein At1g49740),PLC-like phosphodiesterases superfamily protein kinase activity [GO:0016301]; phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629],plasmodesma [GO:0009506]; phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629],plasma membrane [GO:0005886]; phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] locus:2090709;,locus:2012181;,locus:4010713931; AT3G19310,AT1G49740,AT4G36945 PI-PLC X domain-containing protein Os04g0430200 protein (cDNA clone:J023063N02, full insert sequence) Q0JD56 Q0JD56_ORYSJ Os04g0430200 Os04g0430200 OSNPB_040430200 ENOG411DT1E EMB1027,emb1027 Q9C713,O23247,Q7DLG4,A0A1P8B7W2,A0A1P8B7W5,A0A1P8B7W8 SYRC_ARATH,SYRM_ARATH,Q7DLG4_ARATH,A0A1P8B7W2_ARATH,A0A1P8B7W5_ARATH,A0A1P8B7W8_ARATH Arginine--tRNA ligase, cytoplasmic (EC 6.1.1.19) (Arginyl-tRNA synthetase) (ArgRS),Arginine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.19) (Arginyl-tRNA synthetase) (ArgRS) (Protein EMBRYO DEFECTIVE 1027),Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginyl-tRNA synthetase, class Ic),Arginyl-tRNA synthetase, class Ic DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:16297076}.,DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at the globular stage. {ECO:0000305|PubMed:16297076}. Embryo defective; Globular-D. Meinke-2002 FUNCTION: Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis. {ECO:0000250|UniProtKB:P54136}. ARA:AT1G66530-MONOMER;,ARA:AT4G26300-MONOMER; 6.1.1.19 66446,72387,66324,69318,70922,73324 Arginine--tRNA ligase, cytoplasmic (EC 6.1.1.19) (Arginyl-tRNA synthetase) (ArgRS),Arginine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.19) (Arginyl-tRNA synthetase) (ArgRS) (Protein EMBRYO DEFECTIVE 1027),Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginyl-tRNA synthetase, class Ic),Arginyl-tRNA synthetase, class Ic cytoplasm [GO:0005737]; cytosol [GO:0005829]; arginine-tRNA ligase activity [GO:0004814]; ATP binding [GO:0005524]; arginyl-tRNA aminoacylation [GO:0006420],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; arginine-tRNA ligase activity [GO:0004814]; ATP binding [GO:0005524]; arginyl-tRNA aminoacylation [GO:0006420]; embryo development ending in seed dormancy [GO:0009793],cytoplasm [GO:0005737]; arginine-tRNA ligase activity [GO:0004814]; ATP binding [GO:0005524]; arginyl-tRNA aminoacylation [GO:0006420] locus:2028982;,locus:2136794; AT1G66530,AT4G26300 Arginyl-tRNA synthetase Os05g0163000 protein (Putative Arginyl-tRNA synthetase),Os01g0158500 protein (Fragment) Q75IR7,A0A0P0UYI0 Q75IR7_ORYSJ,A0A0P0UYI0_ORYSJ Os05g0163000 OsJ_17227 OSJNBb0099P06.6 OSNPB_050163000,Os01g0158500 OSNPB_010158500 ENOG411DT1D ntmc2T5.2,NTMC2T5.1 B6ETT7,Q8L626,F4I4Z6 B6ETT7_ARATH,Q8L626_ARATH,F4I4Z6_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein (NTMC2T5.2 protein),At1g50260 (N-terminal-transmembrane-C2 domain type 5.1) (Uncharacterized protein At1g50260),N-terminal-transmembrane-C2 domain type 5.1 76954,75366,70836 Calcium-dependent lipid-binding (CaLB domain) family protein (NTMC2T5.2 protein),At1g50260 (N-terminal-transmembrane-C2 domain type 5.1) (Uncharacterized protein At1g50260),N-terminal-transmembrane-C2 domain type 5.1 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2092291;,locus:2011912; AT3G19830,AT1G50260 integral membrane single C2 domain protein Os02g0829200 protein (Fragment) Q0DW69 Q0DW69_ORYSJ Os02g0829200 Os02g0829200 OSNPB_020829200 ENOG411DT1K Q5BPZ1,Q9LFX3,A0A1P8AMR2,B3H577,B3H6Q1 Q5BPZ1_ARATH,Q9LFX3_ARATH,A0A1P8AMR2_ARATH,B3H577_ARATH,B3H6Q1_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein,T7N9.21 (Tetratricopeptide repeat (TPR)-like superfamily protein) 54815,53589,50684,42230,38100 Tetratricopeptide repeat (TPR)-like superfamily protein,T7N9.21 (Tetratricopeptide repeat (TPR)-like superfamily protein) locus:2205764;,locus:2205809; AT1G27110,AT1G27150 tetratricopeptide repeat protein 38-like Os03g0689900 protein A0A0P0W2C1 A0A0P0W2C1_ORYSJ Os03g0689900 OSNPB_030689900 ENOG411DT1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lipid phosphate phosphatase 3 Os01g0139600 protein (cDNA clone:J033011L13, full insert sequence) Q0JQT7 Q0JQT7_ORYSJ Os01g0139600 Os01g0139600 OSNPB_010139600 ENOG411DT1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os09g0300800 protein (cDNA clone:001-115-H07, full insert sequence),Os08g0356800 protein (cDNA clone:J013155K13, full insert sequence),Os08g0355400 protein,Os08g0356700 protein,Os10g0450000 protein,Os09g0304500 protein (cDNA clone:006-304-C06, full insert sequence),Os09g0305300 protein (cDNA clone:001-008-F02, full insert sequence) (cDNA clone:J023147E24, full insert sequence),Os08g0356500 protein,Os10g0448566 protein,Os09g0301800 protein,Os10g0450000 protein (Fragment),Os10g0449600 protein Q0J2T4,Q6YZM9,Q6Z5Z2,Q6YZN1,Q0IXC5,Q0J2T1,Q0J2S9,Q6Z5Z5,Q6YZN3,A0A0P0XV69,A0A0P0XKY2,A0A0P0XUT5,A0A0P0XV92 Q0J2T4_ORYSJ,Q6YZM9_ORYSJ,Q6Z5Z2_ORYSJ,Q6YZN1_ORYSJ,Q0IXC5_ORYSJ,Q0J2T1_ORYSJ,Q0J2S9_ORYSJ,Q6Z5Z5_ORYSJ,Q6YZN3_ORYSJ,A0A0P0XV69_ORYSJ,A0A0P0XKY2_ORYSJ,A0A0P0XUT5_ORYSJ,A0A0P0XV92_ORYSJ Os09g0300800 Os09g0300800 OSNPB_090300800,Os08g0356800 Os08g0356800 B1104G07.34 OSNPB_080356800 P0426E02.12,B1104G07.4-1 Os08g0355400 OsJ_27028 OSNPB_080355400,Os08g0356700 B1104G07.30 OsJ_27032 OSNPB_080356700 P0426E02.8,Os10g0450000 OSNPB_100450000,Os09g0304500 Os09g0304500 OSNPB_090304500,Os09g0305300 Os09g0305300 OSNPB_090305300,B1104G07.4-2 Os08g0355400 OSNPB_080355400,Os08g0356500 B1104G07.27 OsJ_27030 OSNPB_080356500 P0426E02.5,Os10g0448566 OSNPB_100448566,Os09g0301800 OSNPB_090301800,Os10g0449600 OSNPB_100449600 ENOG411DT1H matR P93307 P93307_ARATH Maturase (Fragment) 75453 Maturase (Fragment) mitochondrion [GO:0005739]; mRNA processing [GO:0006397] locus:504954535; Inherit from COG: RNA-directed DNA polymerase Maturase-related protein (Fragment) Q8HCN2 Q8HCN2_ORYSJ mat-r ENOG411DT1N dl4530c O23544,A0A1P8B7G5,A0A1P8B7H9 O23544_ARATH,A0A1P8B7G5_ARATH,A0A1P8B7H9_ARATH Neurofilament heavy protein (Uncharacterized protein AT4g17000) (Uncharacterized protein dl4530c),Neurofilament heavy protein 75341,73893,65346 Neurofilament heavy protein (Uncharacterized protein AT4g17000) (Uncharacterized protein dl4530c),Neurofilament heavy protein locus:2130334; AT4G17000 NA Expressed protein (Os03g0770900 protein) Q6AU54 Q6AU54_ORYSJ Os03g0770900 LOC_Os03g56070 Os03g0770900 OSJNBa0072F13.7 OSNPB_030770900 ENOG411DT1M UPM1 Q42606,A0A1P8BE13,F4KIS7 Q42606_ARATH,A0A1P8BE13_ARATH,F4KIS7_ARATH At5g40850/MHK7_8 (Urophorphyrin III methylase) (EC 2.1.1.107) (Urophorphyrin methylase 1),Urophorphyrin methylase 1 ARA:AT5G40850-MONOMER; 2.1.1.107 39930,32217,38221 At5g40850/MHK7_8 (Urophorphyrin III methylase) (EC 2.1.1.107) (Urophorphyrin methylase 1),Urophorphyrin methylase 1 chloroplast [GO:0009507]; uroporphyrin-III C-methyltransferase activity [GO:0004851]; oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354],methyltransferase activity [GO:0008168]; oxidation-reduction process [GO:0055114],methyltransferase activity [GO:0008168]; oxidation-reduction process [GO:0055114]; porphyrin-containing compound biosynthetic process [GO:0006779] locus:2164506; AT5G40850 uroporphyrinogen III methyltransferase Os01g0631200 protein (Fragment) Q0JL19 Q0JL19_ORYSJ Os01g0631200 Os01g0631200 OSNPB_010631200 ENOG411DT1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7) Q69XZ1 Q69XZ1_ORYSJ Os06g0472900 OSNPB_060472900 P0633D04.10 ENOG411DT1R LHCA3 Q9SY97 LHCA3_ARATH Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic (Lhca3*1) (LHCI type III LHCA3) DISRUPTION PHENOTYPE: Slight decrease (30 percent) of LHCA2 levels (at protein level). {ECO:0000269|PubMed:11553743}. FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated, here photosystem I. {ECO:0000269|PubMed:21806943}. MISCELLANEOUS: Light emission at 715-720 nm upon excitation at 440 and 475 nm, and subsequent transfer of excitation energy to the photosystem I core with a relative slow rate of 25 ns(-1). {ECO:0000269|PubMed:21806943}. 29181 Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic (Lhca3*1) (LHCI type III LHCA3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to high light intensity [GO:0009644]; response to low light intensity stimulus [GO:0009645] locus:2200868; AT1G61520 Chlorophyll a-b binding protein Chlorophyll a-b binding protein, chloroplastic Q6H746,Q6H748 Q6H746_ORYSJ,Q6H748_ORYSJ P0026H03.3-2 OJ1524_D08.28-2 Os02g0197600 OSNPB_020197600,P0026H03.3-1 OJ1524_D08.28-1 Os02g0197600 OsJ_05758 OSNPB_020197600 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DT1Q DHS Q9FI94,A0A1P8BA27,F4K292 DHYS_ARATH,A0A1P8BA27_ARATH,F4K292_ARATH Deoxyhypusine synthase (EC 2.5.1.46),Deoxyhypusine synthase FUNCTION: Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. Also able to produce homospermidine from putrescine (By similarity). {ECO:0000250}. PATHWAY: Protein modification; eIF5A hypusination. ARA:AT5G05920-MONOMER; R-ATH-204626; 2.5.1.46 41064,19870,27703 Deoxyhypusine synthase (EC 2.5.1.46),Deoxyhypusine synthase cytoplasm [GO:0005737]; deoxyhypusine synthase activity [GO:0034038]; embryo sac development [GO:0009553]; peptidyl-lysine modification to peptidyl-hypusine [GO:0008612],peptidyl-lysine modification to peptidyl-hypusine [GO:0008612] locus:2153664; AT5G05920 Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. Also able to produce homospermidine from putrescine (By similarity) Deoxyhypusine synthase, putative, expressed (Os03g0740600 protein) (Putative deoxyhypusine synthase) (Putative deoxyhypusine synthase (With alternative splicing)) (cDNA clone:J033073I16, full insert sequence),Os09g0421100 protein Q7Y1G4,A0A0P0XN28 Q7Y1G4_ORYSJ,A0A0P0XN28_ORYSJ OSJNBa0057G07.4 OJ1365_D05.23 LOC_Os03g52970 Os03g0740600 OSNPB_030740600,Os09g0421100 OSNPB_090421100 ENOG411DT1P HDG5 Q9FJS2 HDG5_ARATH Homeobox-leucine zipper protein HDG5 (HD-ZIP protein HDG5) (Homeodomain GLABRA 2-like protein 5) (Homeodomain transcription factor HDG5) (Protein HOMEODOMAIN GLABROUS 5) No visible phenotype. FUNCTION: Probable transcription factor. {ECO:0000250}. 92120 Homeobox-leucine zipper protein HDG5 (HD-ZIP protein HDG5) (Homeodomain GLABRA 2-like protein 5) (Homeodomain transcription factor HDG5) (Protein HOMEODOMAIN GLABROUS 5) nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; maintenance of floral organ identity [GO:0048497]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}. locus:2170957; AT5G46880 homeobox-leucine zipper protein Homeobox-leucine zipper protein ROC3 (GLABRA 2-like homeobox protein 3) (HD-ZIP protein ROC3) (Homeodomain transcription factor ROC3) (Protein RICE OUTERMOST CELL-SPECIFIC 3),Os01g0384100 protein,Os11g0145300 protein Q336P2,A0A0P0V2W2,A0A0P0XYQ9 ROC3_ORYSJ,A0A0P0V2W2_ORYSJ,A0A0P0XYQ9_ORYSJ ROC3 GL2-3 Os10g0575600 LOC_Os10g42490 OsJ_031281 OSJNBa0027L23.2,Os01g0384100 OSNPB_010384100,Os11g0145300 OSNPB_110145300 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DT1W SNRNP35 Q8VY74,A0A1P8AYZ8 U1135_ARATH,A0A1P8AYZ8_ARATH U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12 snRNP 35 kDa protein) (U11/U12-35K),RNA-binding (RRM/RBD/RNP motifs) family protein FUNCTION: May facilitate 5' splice site recognition in the minor spliceosome. May be involved in interactions with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron. {ECO:0000269|PubMed:10373121}. R-ATH-72165; 38375,22737 U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12 snRNP 35 kDa protein) (U11/U12-35K),RNA-binding (RRM/RBD/RNP motifs) family protein commitment complex [GO:0000243]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; U11/U12 snRNP [GO:0034693]; U12-type spliceosomal complex [GO:0005689]; mRNA binding [GO:0003729]; snRNA binding [GO:0017069]; mRNA splicing, via spliceosome [GO:0000398],RNA binding [GO:0003723] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15987817}. locus:2058141; AT2G43370 Small nuclear ribonucleoprotein Os09g0513700 protein (Ribonucleoprotein antigen-like) (cDNA clone:J013129L11, full insert sequence) Q69IN4 Q69IN4_ORYSJ Os09g0513700 OsJ_29992 OSNPB_090513700 P0450E05.11 ENOG411DT1V F4I114,F4I854 Y1960_ARATH,F4I854_ARATH Probable serine/threonine-protein kinase At1g09600 (EC 2.7.11.-),Protein kinase superfamily protein R-ATH-674695;R-ATH-6796648; 2.7.11.- 79698,77588 Probable serine/threonine-protein kinase At1g09600 (EC 2.7.11.-),Protein kinase superfamily protein nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468],nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468] locus:2012290;,locus:2206525; AT1G09600,AT1G57700 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DT1U CRSP,SBT5.1,ATSBT5.2 Q9LNU1,F4HSQ2,A0A1P8AUU9 CRSP_ARATH,SBT51_ARATH,A0A1P8AUU9_ARATH CO(2)-response secreted protease (Subtilisin-like serine protease) (AtSBT5.2) (Tripeptidyl-peptidase II) (EC 3.4.14.10),Subtilisin-like protease SBT5.1 (EC 3.4.21.-) (Subtilase subfamily 5 member 1) (AtSBT5.1),Subtilisin-like serine endopeptidase family protein DISRUPTION PHENOTYPE: Increased stomata number at elevated CO(2) concentration and increased number of epidermal cells. {ECO:0000269|PubMed:25043023}. FUNCTION: Mediates CO(2)-controlled stomatal development by cleaving peptide EPF2 (AC Q8LC53). Not active on peptides EPF1 (AC Q8S8I4) or stomagen (AC Q9SV72). {ECO:0000269|PubMed:25043023}. ARA:AT1G20160-MONOMER; 3.4.14.10,3.4.21.- 81480,85722,59072 CO(2)-response secreted protease (Subtilisin-like serine protease) (AtSBT5.2) (Tripeptidyl-peptidase II) (EC 3.4.14.10),Subtilisin-like protease SBT5.1 (EC 3.4.21.-) (Subtilase subfamily 5 member 1) (AtSBT5.1),Subtilisin-like serine endopeptidase family protein apoplast [GO:0048046]; cell wall [GO:0005618]; serine-type endopeptidase activity [GO:0004252]; serine-type peptidase activity [GO:0008236]; negative regulation of defense response to bacterium [GO:1900425]; negative regulation of stomatal complex development [GO:2000122]; proteolysis [GO:0006508]; regulation of stomatal complex development [GO:2000038]; response to carbon dioxide [GO:0010037],extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252],serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Expressed in roots, guard cells and meristemoid and pavement cells. {ECO:0000269|PubMed:25043023}. locus:2198656;,locus:2198606; AT1G20160,AT1G20150 subtilisin-like Os09g0482660 protein (Fragment) C7J6W5 C7J6W5_ORYSJ Os09g0482660 OSNPB_090482660 ENOG411DT1T LIG6 F4HPZ9 LIG6_ARATH DNA ligase 6 (AtLIG6) (DNA ligase VI) (EC 6.5.1.1) (Ligase 1) DISRUPTION PHENOTYPE: Normal vegetative growth and fertility. Slightly enhanced sensitivity to X-rays, leading to a slight root growth reduction after 100-Gy dose of X-ray irradiation. Delayed germination of seeds, especially upon cold and oxidative stress (e.g. by menadione, a genotoxic agent), and reduced seed longevity and storability. Increased DNA damage response in germinating seeds, probably due to accumulation of DNA damage in seeds (PubMed:20584150). Increased stable root transformation susceptibility by A.tumefaciens A208 T-DNA (PubMed:25641249). {ECO:0000269|PubMed:20584150, ECO:0000269|PubMed:25641249}. Delayed germination. Time to germination can be increased by 50%. Overall germination rate is not affected but the process is delayed. The effect is further enhanced under temperature or oxidative stress conditions.,Delayed seed germination- even greater than in atlig6-1 alone. Delayed germination; Sensitive to low temperature, x-rays, and oxidative stress-C. West-2010 FUNCTION: DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair (Probable). Required to maintain seed viability (e.g. longevity and storability) and during seed germination, probably by repairing DNA damage accumulated during seed development, storage and/or imbibition. Faciliates seed germination in cold conditions (2 degrees Celsius) and under oxidative stress (e.g. menadione, a genotoxic agent). Involved in repair of X-ray-induced damage (PubMed:20584150). {ECO:0000269|PubMed:20584150, ECO:0000305}.; FUNCTION: Limits stable root transformation by A.tumefaciens T-DNA. {ECO:0000269|PubMed:25641249}. 6.5.1.1; 6.5.1.1 156322 DNA ligase 6 (AtLIG6) (DNA ligase VI) (EC 6.5.1.1) (Ligase 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA ligase (ATP) activity [GO:0003910]; metal ion binding [GO:0046872]; DNA biosynthetic process [GO:0071897]; DNA integration [GO:0015074]; DNA ligation involved in DNA repair [GO:0051103]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; double-strand break repair via nonhomologous end joining [GO:0006303]; lagging strand elongation [GO:0006273]; positive regulation of cellular response to X-ray [GO:2000685]; response to bleomycin [GO:1904975]; response to cold [GO:0009409]; response to molecule of bacterial origin [GO:0002237]; response to oxidative stress [GO:0006979]; response to UV-C [GO:0010225]; seed development [GO:0048316]; seed germination [GO:0009845] TISSUE SPECIFICITY: Mostly expressed in buds and flowers, and, to a lower extent, in stems, leaves, siliques and seeds. {ECO:0000269|PubMed:20584150}. locus:2033374; AT1G66730 DNA ligase Os01g0685500 protein (Fragment) A0A0P0V6S8 A0A0P0V6S8_ORYSJ Os01g0685500 OSNPB_010685500 ENOG411DT1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YT521-B-like domain Os01g0329800 protein (RNA-binding protein-like),Os01g0329800 protein (Fragment) Q5ZDR1,A0A0P0V1Y2 Q5ZDR1_ORYSJ,A0A0P0V1Y2_ORYSJ Os01g0329800 OSNPB_010329800 P0554D10.22,Os01g0329800 OSNPB_010329800 ENOG411DT1Y Q0WNZ8 Q0WNZ8_ARATH ARM repeat superfamily protein 34440 ARM repeat superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:1005716696; AT1G08315 U-box domain-containing protein Armadillo/beta-catenin repeat-like (Os01g0956075 protein) Q5JJU1 Q5JJU1_ORYSJ Os01g0956075 Os01g0956075 B1139B11.27 OSNPB_010956075 ENOG411DT1X SMT1 Q9LM02 SMT1_ARATH Cycloartenol-C-24-methyltransferase (EC 2.1.1.41) (24-sterol C-methyltransferase 1) (Sterol C-methyltransferase 1) (Protein CEPHALOPOD) (Protein STEROL METHYLTRANSFERASE 1) Embryo defective; Cotyledon-G. Fink-2000 FUNCTION: Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. PATHWAY: Steroid biosynthesis; sterol biosynthesis. ARA:AT5G13710-MONOMER;MetaCyc:AT5G13710-MONOMER; 2.1.1.41; 2.1.1.41 38268 Cycloartenol-C-24-methyltransferase (EC 2.1.1.41) (24-sterol C-methyltransferase 1) (Sterol C-methyltransferase 1) (Protein CEPHALOPOD) (Protein STEROL METHYLTRANSFERASE 1) endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; sterol 24-C-methyltransferase activity [GO:0003838]; embryo development ending in seed dormancy [GO:0009793]; sterol biosynthetic process [GO:0016126] TISSUE SPECIFICITY: Highly expressed in vascular tissue, mature leaves and in regions undergoing cellular expansion. locus:2173229; AT5G13710 Sterol 24-C-methyltransferase Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C-methyltransferase 1) (Sterol C-methyltransferase 1),Methyltransferase (EC 2.1.1.-) (Fragment),Os11g0296900 protein Q6ZIX2,A0A0P0X3S2,A0A0N7KI91,A0A0P0Y1E1 SMT1_ORYSJ,A0A0P0X3S2_ORYSJ,A0A0N7KI91_ORYSJ,A0A0P0Y1E1_ORYSJ Smt1-1 Os07g0206700 LOC_Os07g10600 OJ1119_B04.19-1,Os07g0206700 OSNPB_070206700,Os03g0807600 OSNPB_030807600,Os11g0296900 OSNPB_110296900 FUNCTION: Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. {ECO:0000250}. ENOG411DVY5 TLP1,PLPB O64511,A0A1P8AZE7 TLOV1_ARATH,A0A1P8AZE7_ARATH Protein TWIN LOV 1,PAS/LOV protein B 44890,35635 Protein TWIN LOV 1,PAS/LOV protein B intracellular [GO:0005622]; phosphorelay sensor kinase activity [GO:0000155]; photoreceptor activity [GO:0009881]; protein-chromophore linkage [GO:0018298],intracellular [GO:0005622]; phosphorelay sensor kinase activity [GO:0000155] locus:2058852; AT2G02710 Protein TWIN LOV Os01g0186200 protein (Putative PHY3 protein) (cDNA clone:006-208-A01, full insert sequence),Os01g0186200 protein Q5VRX2,A0A0P0UZ79 Q5VRX2_ORYSJ,A0A0P0UZ79_ORYSJ P0510F03.29-1 Os01g0186200 OsJ_00672 OSNPB_010186200,Os01g0186200 OSNPB_010186200 ENOG411DVY4 Q9LNB2 Q9LNB2_ARATH Cyclin-dependent kinase-like protein (F5O11.6) 56819 Cyclin-dependent kinase-like protein (F5O11.6) kinase activity [GO:0016301] locus:2034745; AT1G12330 NA Expressed protein (Os03g0249100 protein) (cDNA clone:002-116-H06, full insert sequence) Q10P30 Q10P30_ORYSJ LOC_Os03g14500 Os03g0249100 OsJ_10142 OSNPB_030249100 ENOG411DVY7 PEL1,PEL2 Q9ZT87,Q9M2H7 PEL1_ARATH,PEL2_ARATH Protein PELOTA 1 (AtPelota1) (EC 3.1.-.-),Protein PELOTA 2 (AtPelota2) (EC 3.1.-.-) FUNCTION: Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity (Potential). {ECO:0000250, ECO:0000305}. 3.1.-.- 42519,44721 Protein PELOTA 1 (AtPelota1) (EC 3.1.-.-),Protein PELOTA 2 (AtPelota2) (EC 3.1.-.-) cytoplasm [GO:0005737]; nucleus [GO:0005634]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; ribosome binding [GO:0043022]; nonfunctional rRNA decay [GO:0070651]; nuclear-transcribed mRNA catabolic process, no-go decay [GO:0070966]; nuclear-transcribed mRNA catabolic process, non-stop decay [GO:0070481]; ribosome disassembly [GO:0032790]; RNA surveillance [GO:0071025]; translation [GO:0006412] TISSUE SPECIFICITY: Expressed constitutively in seedlings, buds, stems, leaves and roots. {ECO:0000269|Ref.1}. locus:2137732;,locus:2085465; AT4G27650,AT3G58390 eRF1 domain 3 Os04g0659900 protein,Os04g0659900 protein (Fragment) A0A0P0WFV9,A0A0N7KJV1 A0A0P0WFV9_ORYSJ,A0A0N7KJV1_ORYSJ Os04g0659900 OSNPB_040659900 ENOG411DVY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0493801 protein A3BBZ3 A3BBZ3_ORYSJ Os06g0493801 OsJ_21424 OSNPB_060493801 ENOG411DVY1 ER-ANT1 Q8LB08 ADT4_ARATH ADP,ATP carrier protein ER-ANT1 (ADP/ATP translocase ER-ANT1) (Endoplasmic reticulum-adenine nucleotide transporter 1) (ER-ANT1) DISRUPTION PHENOTYPE: Dramatic growth retardation. {ECO:0000269|PubMed:18296626}. Very slow growth; Dwarf; Short roots; Increased branching; Pale green; Small, translucent seeds-J. Tjaden-2008 FUNCTION: Catalyzes the exchange of ADP and ATP across the endoplasmic reticulum membrane. {ECO:0000269|PubMed:18296626}. Parkinson's disease (05012),HTLV-I infection (05166),Huntington's disease (05016),Calcium signaling pathway (04020) 33788 ADP,ATP carrier protein ER-ANT1 (ADP/ATP translocase ER-ANT1) (Endoplasmic reticulum-adenine nucleotide transporter 1) (ER-ANT1) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; ATP:ADP antiporter activity [GO:0005471]; adenine nucleotide transport [GO:0051503]; regulation of mitochondrial membrane permeability [GO:0046902]; root development [GO:0048364]; seed development [GO:0048316]; shoot system development [GO:0048367] locus:2178925; AT5G17400 ADPATP carrier protein ADP,ATP carrier protein 2, mitochondrial, putative, expressed (Os11g0661300 protein) Q2R030 Q2R030_ORYSJ Os11g0661300 LOC_Os11g43960 Os11g0661300 OsJ_34735 OSNPB_110661300 ENOG411DVY0 Q9LPJ1 Q9LPJ1_ARATH Electron carrier/iron ion-binding protein (F6N18.11) (Uncharacterized protein At1g32730) 36333 Electron carrier/iron ion-binding protein (F6N18.11) (Uncharacterized protein At1g32730) locus:2035549; AT1G32730 NA Os08g0129500 protein (cDNA clone:J033111O03, full insert sequence) Q7EZS0 Q7EZS0_ORYSJ P0582D05.115 Os08g0129500 OSNPB_080129500 ENOG411DVY3 Q6NLS0,A0A1P8B338,F4IJQ6 Q6NLS0_ARATH,A0A1P8B338_ARATH,F4IJQ6_ARATH At2g29070 (Ubiquitin fusion degradation UFD1 family protein),Ubiquitin fusion degradation UFD1 family protein R-ATH-110320; 34903,21793,31253 At2g29070 (Ubiquitin fusion degradation UFD1 family protein),Ubiquitin fusion degradation UFD1 family protein ubiquitin-dependent protein catabolic process [GO:0006511] locus:2066122; AT2G29070 ubiquitin fusion degradation NA NA NA NA NA NA NA ENOG411DVY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0147800 protein A0A0P0X2K1 A0A0P0X2K1_ORYSJ Os07g0147800 OSNPB_070147800 ENOG411DVY9 Q56XZ5 Q56XZ5_ARATH Elongation factor (Uncharacterized protein At3g59670) 57678 Elongation factor (Uncharacterized protein At3g59670) translation elongation factor activity [GO:0003746] locus:2097448; AT3G59670 NA Os05g0366300 protein (cDNA clone:J033031H05, full insert sequence),Os05g0366300 protein (Fragment) Q75IS4,A0A0P0WLG2 Q75IS4_ORYSJ,A0A0P0WLG2_ORYSJ OSJNBb0111K12.17 Os05g0366300 OsJ_18263 OSJNBa0090H02.9 OSNPB_050366300,Os05g0366300 OSNPB_050366300 ENOG411DVY8 ERF053,ERF054 Q9SKT1,Q9M0J3 ERF53_ARATH,ERF54_ARATH Ethylene-responsive transcription factor ERF053 (AtERF53),Ethylene-responsive transcription factor ERF054 (Transcription factor QRAP2) FUNCTION: Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.,FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 38398,33403 Ethylene-responsive transcription factor ERF053 (AtERF53),Ethylene-responsive transcription factor ERF054 (Transcription factor QRAP2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of cellular response to heat [GO:1900036]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of response to water deprivation [GO:2000070]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2051359;,locus:2123708; AT2G20880,AT4G28140 Transcription factor Os04g0529100 protein,Os06g0553401 protein Q0JBJ4,A0A0P0WXM2 Q0JBJ4_ORYSJ,A0A0P0WXM2_ORYSJ Os04g0529100 Os04g0529100 OSNPB_040529100,Os06g0553401 OSNPB_060553401 ENOG411DVYE Q6IDC0 Q6IDC0_ARATH At3g45900 (Ribonuclease P protein subunit P38-like protein) 45343 At3g45900 (Ribonuclease P protein subunit P38-like protein) nucleolar ribonuclease P complex [GO:0005655] locus:2077207; AT3G45900 NA Expressed protein (Os03g0853600 protein) Q84T58 Q84T58_ORYSJ Os03g0853600 LOC_Os03g63660 Os03g63660 OSNPB_030853600 ENOG411DVYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os05g0536250 protein (Transcription factor AP2D4),Os06g0145700 protein (Fragment) Q2TQ39,A0A0P0WSD2 Q2TQ39_ORYSJ,A0A0P0WSD2_ORYSJ AP2D4 Os05g0536250 OSNPB_050536250,Os06g0145700 OSNPB_060145700 ENOG411DVYG EULS3 Q945P1 EULS3_ARATH Ricin B-like lectin EULS3 (Euonymus lectin S3) (AtEULS3) FUNCTION: Lectin which binds carbohydrates in vitro. Interacts through its lectin domain with glycan structures containing one or more Lewis X, Lewis Y or lactosamine motifs (PubMed:21945438). May play a role in abiotic stress responses (Probable). May play a role in abscisic acid-induced stomatal closure. May play a role in disease resistance against Pseudomonas syringae through its involvement in stomatal movement (PubMed:26259197). {ECO:0000269|PubMed:21945438, ECO:0000269|PubMed:26259197, ECO:0000305|PubMed:25238657}. MISCELLANEOUS: Plants silencing EULS3 exhibit an aberrant abscisic acid-induced stomatal closure. {ECO:0000269|PubMed:26259197}. 35648 Ricin B-like lectin EULS3 (Euonymus lectin S3) (AtEULS3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; carbohydrate binding [GO:0030246]; defense response to bacterium [GO:0042742]; stomatal closure [GO:0090332] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, cauline leaves and flowers. {ECO:0000269|PubMed:26259197}. locus:2064965; AT2G39050 Inherit from euNOG: Stress responsive protein Ricin B-like lectin R40G3 (Osr40g3) Q6Z4N4 40G3_ORYSJ R40G3 Os07g0684000 LOC_Os07g48500 OsJ_25617 OSJNBa0060O17.15 FUNCTION: Lectin which binds carbohydrates in vitro. Interacts through its lectin domain with glycan structures containing specific motifs. {ECO:0000250|UniProtKB:Q945P1}. ENOG411DVYF Q940M5,A0A1P8BDZ4,Q66GM7,F4KI54,A0A1P8BE07,A0A1I9LTH3 Q940M5_ARATH,A0A1P8BDZ4_ARATH,Q66GM7_ARATH,F4KI54_ARATH,A0A1P8BE07_ARATH,A0A1I9LTH3_ARATH AT3G10250 protein (AT3g10250/F14P13_15) (Histidine-tRNA ligase),Histidine-tRNA ligase,At5g04090 (Histidine-tRNA ligase) 36378,31192,34538,29759,36427,33140 AT3G10250 protein (AT3g10250/F14P13_15) (Histidine-tRNA ligase),Histidine-tRNA ligase,At5g04090 (Histidine-tRNA ligase) ligase activity [GO:0016874] locus:2076299;,locus:2146728; AT3G10250,AT5G04090 plant-specific domain TIGR01589 family protein Os02g0137100 protein (cDNA clone:J033025E21, full insert sequence) Q0E447 Q0E447_ORYSJ Os02g0137100 Os02g0137100 OSNPB_020137100 ENOG411DVYC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oxidoreductase 2OG-FeII oxygenase domain containing protein Os08g0417100 protein (cDNA, clone: J100014C05, full insert sequence),Os08g0417000 protein (Putative 2-oxoglutarate-dependent dioxygenase) (cDNA clone:001-027-C10, full insert sequence) (cDNA clone:J013158D09, full insert sequence) B7F9Y2,Q7EYC9 B7F9Y2_ORYSJ,Q7EYC9_ORYSJ Os08g0417100 OSNPB_080417100,P0477F03.104 Os08g0417000 OSNPB_080417000 P0433E10.28 ENOG411DVYM CBSX5,MGN6.11 Q84WQ5,F4JXB6 CBSX5_ARATH,F4JXB6_ARATH CBS domain-containing protein CBSX5,CBS domain-containing protein 41961,43794 CBS domain-containing protein CBSX5,CBS domain-containing protein response to wounding [GO:0009611] locus:2123999;,locus:2164027; AT4G27460,AT5G53750 CBS domain-containing protein Os10g0499400 protein (Fragment),Os02g0639300 protein Q0IWM7,A0A0P0VM45 Q0IWM7_ORYSJ,A0A0P0VM45_ORYSJ Os10g0499400 Os10g0499400 OSNPB_100499400,Os02g0639300 OSNPB_020639300 ENOG411DVYN Q9LSF5 PP254_ARATH Pentatricopeptide repeat-containing protein At3g25210, mitochondrial 43247 Pentatricopeptide repeat-containing protein At3g25210, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2090220; AT3G25210 Pentatricopeptide repeat-containing protein Os06g0184866 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os09g0131500 protein Q5SMM9,A3BW91 Q5SMM9_ORYSJ,A3BW91_ORYSJ Os06g0184866 Os06g0184866 OSNPB_060184866 P0554A06.22,Os09g0131500 OsJ_28448 OSNPB_090131500 ENOG411DVYH PYD2 Q9FMP3 DPYS_ARATH Dihydropyrimidinase (EC 3.5.2.2) (Dihydropyrimidine amidohydrolase) (Protein PYRIMIDINE 2) DISRUPTION PHENOTYPE: No visible phenotype, but unable to grow on uracil as sole nitrogen source. {ECO:0000269|PubMed:19413687}. The pyd2-1 mutant has a wild-type appearance under normal growth conditions. Pyrimidine nucleotide and uridine levels are not changed in the mutant but uracil levels are increased. The mutant has about a 75% decrease in uracil catabolism. These mutants cannot grow normally when uracil is provided as a sole nitrogen source.,The pyd2-2 mutant has a wild-type appearance under normal growth conditions. Pyrimidine nucleotide and uridine levels are not changed in the mutant but uracil levels are increased. These mutants cannot grow normally when uracil is provided as a sole nitrogen source. Unable to use urea as primary nitrogen source-R. Slocum-2009 FUNCTION: Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyze the ring opening of 5,6-dihydrouracil to N-carbamoyl-alanine and of 5,6-dihydrothymine to N-carbamoyl-amino isobutyrate. Involved in the recycling of nitrogen from nucleobases to general nitrogen metabolism. {ECO:0000269|PubMed:12626710, ECO:0000269|PubMed:19413687}. PATHWAY: Amino-acid biosynthesis; beta-alanine biosynthesis. {ECO:0000305}. MetaCyc:AT5G12200-MONOMER; R-ATH-73621; 3.5.2.2; 3.5.2.2 57991 Dihydropyrimidinase (EC 3.5.2.2) (Dihydropyrimidine amidohydrolase) (Protein PYRIMIDINE 2) endomembrane system [GO:0012505]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; dihydropyrimidinase activity [GO:0004157]; metal ion binding [GO:0046872]; beta-alanine biosynthetic process [GO:0019483]; cellular response to nitrogen levels [GO:0043562]; uracil catabolic process [GO:0006212] DEVELOPMENTAL STAGE: Up-regulated between days 3 and 12 after germination and during senescence. {ECO:0000269|PubMed:19413687}. locus:2177048; AT5G12200 dihydropyrimidinase (EC 3.5.2.2) Os01g0807900 protein (Putative dihydropyrimidine amidohydrolase) (cDNA clone:J023114O11, full insert sequence),Os01g0807900 protein (Putative dihydropyrimidine amidohydrolase) (cDNA clone:J013110N21, full insert sequence) Q94J90,Q5VR53 Q94J90_ORYSJ,Q5VR53_ORYSJ P0702B09.41-1 Os01g0807900 OsJ_03812 OSNPB_010807900,P0702B09.41-2 Os01g0807900 OSNPB_010807900 ENOG411DVYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0392000 protein (cDNA clone:J013074N02, full insert sequence),Os08g0425000 protein (cDNA clone:001-117-A06, full insert sequence) Q6H416,Q7EZU2 Q6H416_ORYSJ,Q7EZU2_ORYSJ Os09g0392000 Os09g0392000 B1175F05.20 OsJ_29237 OSNPB_090392000,P0456B03.107 Os08g0425000 OSJNBa0056L09.36 OSNPB_080425000 ENOG411DVYT KIN7K,KIN7C,KIN7L F4J8L3,Q8W5R6,F4K3X8,F4J8L2,A0A1P8BGS8,A0A1P8BGT7,A0A1P8BGR0 KN7K_ARATH,KN7C_ARATH,KN7L_ARATH,F4J8L2_ARATH,A0A1P8BGS8_ARATH,A0A1P8BGT7_ARATH,A0A1P8BGR0_ARATH Kinesin-like protein KIN-7K, chloroplastic,Kinesin-like protein KIN-7C, mitochondrial (Mitochondria-targeted kinesin-related protein 1),Kinesin-like protein KIN-7L, chloroplastic,P-loop containing nucleoside triphosphate hydrolases superfamily protein,Kinesin-like protein ARA:GQT-2813-MONOMER; 108467,98456,109134,117868,80937,110037,82280 Kinesin-like protein KIN-7K, chloroplastic,Kinesin-like protein KIN-7C, mitochondrial (Mitochondria-targeted kinesin-related protein 1),Kinesin-like protein KIN-7L, chloroplastic,P-loop containing nucleoside triphosphate hydrolases superfamily protein,Kinesin-like protein chloroplast [GO:0009507]; microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],chloroplast [GO:0009507]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2036987;,locus:2144103;,locus:2088629; AT3G12020,AT1G21730,AT5G06670 KISc Kinesin-like protein KIN-7D, chloroplastic,Kinesin-like protein KIN-7E, chloroplastic Q6YZ52,B9FFA3 KN7D_ORYSJ,KN7E_ORYSJ KIN7D K16 Os02g0775400 LOC_Os02g53520 OJ1448_G06.23 OsJ_08573 OSJNBb0013K01.4 OSNPB_020775400,KIN7E Os04g0434600 LOC_Os04g35510 OsJ_14878 OSJNBa0088K19.16 OSJNBb0086G13.9 FUNCTION: Probable minus end-directed motor protein with a microtubule-enhanced ATPase activity. Binds ATP/ADP in vitro. Retains total enzymatic activity even after the removal of the ADP bound in the active site. {ECO:0000269|PubMed:16672264, ECO:0000269|PubMed:16751590}. ENOG411DVYW F16L2_40 Q9LZU7 Q9LZU7_ARATH DNA-binding protein-like (Nuclear factor kappa-B-binding-like protein) 147087 DNA-binding protein-like (Nuclear factor kappa-B-binding-like protein) Ino80 complex [GO:0031011]; DNA binding [GO:0003677] locus:2077102; AT3G45830 Inherit from KOG: Nuclear factor related to kappaB binding protein Os05g0117864 protein (Fragment) A0A0P0WH74 A0A0P0WH74_ORYSJ Os05g0117864 OSNPB_050117864 ENOG411DVYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoenolpyruvate carboxykinase Os04g0592500 protein (cDNA clone:J013090K18, full insert sequence) Q0JAK7 Q0JAK7_ORYSJ Os04g0592500 Os04g0592500 OSNPB_040592500 ENOG411DVYP SYP131,SYP132 Q9SRV7,Q8VZU2,F4K9K4,A0A1I9LQP3,F4K9K2 SY131_ARATH,SY132_ARATH,F4K9K4_ARATH,A0A1I9LQP3_ARATH,F4K9K2_ARATH Putative syntaxin-131 (AtSYP131),Syntaxin-132 (AtSYP132),Syntaxin of plants 132,Syntaxin of plants 131 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-449836; 34720,34225,25223,34736,35402 Putative syntaxin-131 (AtSYP131),Syntaxin-132 (AtSYP132),Syntaxin of plants 132,Syntaxin of plants 131 endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],membrane [GO:0016020]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],cell plate [GO:0009504]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886]; response to abscisic acid [GO:0009737]; vesicle-mediated transport [GO:0016192] locus:2079449;,locus:2181484; AT3G03800,AT5G08080 syntaxin Os06g0168500 protein (Putative syntaxin-related protein Nt-syr1),Os07g0164300 protein (Putative syntaxin-related protein) (cDNA clone:J033030B17, full insert sequence) (cDNA clone:J033030B18, full insert sequence),Os07g0528900 protein Q5VRF6,Q7XIE2,A0A0P0X6V1 Q5VRF6_ORYSJ,Q7XIE2_ORYSJ,A0A0P0X6V1_ORYSJ Os06g0168500 Os06g0168500 OsJ_20269 OSJNBa0033B09.18 OSNPB_060168500 P0680A03.39,P0039H02.103 Os07g0164300 P0428D12.123 OsJ_23199 OSNPB_070164300,Os07g0528900 OSNPB_070528900 ENOG411DVYS TOM2AH3 Q940P5 TET19_ARATH Tetraspanin-19 (TOM2A homologous protein 3) DISRUPTION PHENOTYPE: Slightly reduced efficiency of intracellular multiplication of tobamoviruses (e.g. crucifer strain TMV-Cg), characterized by a reduced amplification of TMV-related RNAs. {ECO:0000269|PubMed:18474569}. FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000269|PubMed:18474569}.; FUNCTION: Promotes intracellular multiplication of tobamoviruses, probably being a component of the replication complex. {ECO:0000269|PubMed:18474569}. 24656 Tetraspanin-19 (TOM2A homologous protein 3) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774] TISSUE SPECIFICITY: Expressed in rosette leaves. {ECO:0000269|PubMed:18474569}. locus:2051348; AT2G20740 expressed protein OSJNBb0017I01.13 protein (Os04g0679900 protein) (cDNA clone:006-212-B10, full insert sequence) (cDNA clone:J023034M14, full insert sequence) Q7XKE1 Q7XKE1_ORYSJ Os04g0679900 OsJ_16643 OSJNBb0017I01.13 OSNPB_040679900 ENOG411DVYR Q9FFE3 PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial 60933 Pentatricopeptide repeat-containing protein At5g16420, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2171352; AT5G16420 Pentatricopeptide repeat-containing protein Os06g0125300 protein (Salt-inducible protein-like),Os06g0125300 protein (Fragment) Q9LWW3,A0A0P0WS92 Q9LWW3_ORYSJ,A0A0P0WS92_ORYSJ Os06g0125300 OsJ_19951 OSNPB_060125300 P0425F02.25,Os06g0125300 OSNPB_060125300 ENOG411DVYY PCMP-H29 Q8S9M4 PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080 72816 Pentatricopeptide repeat-containing protein At2g41080 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] AT2G41080 Pentatricopeptide repeat-containing protein Os03g0816600 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J023018C14, full insert sequence) Q10BI4 Q10BI4_ORYSJ Os03g0816600 LOC_Os03g60200 OSNPB_030816600 ENOG411DVYX P5CSA,P5CSB,P5CS1,P5CS2 P54887,P54888,B9DFG0,B3H5E3,F4IFZ9 P5CS1_ARATH,P5CS2_ARATH,B9DFG0_ARATH,B3H5E3_ARATH,F4IFZ9_ARATH Delta-1-pyrroline-5-carboxylate synthase A (P5CS A) [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)],Delta-1-pyrroline-5-carboxylate synthase B (P5CS B) [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)],AT2G39800 protein (Delta1-pyrroline-5-carboxylate synthase 1),Delta 1-pyrroline-5-carboxylate synthase 2,Delta-1-pyrroline-5-carboxylate synthase [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)] p5cs1-1 mutants accumulate less proline in response to salt stress than wild-type seedlings. Their roots are hypersensitive to salt stress and they have increased evidence of oxdative stress and lipid peroxidation under salt stress than wild type plants.,p5cs1-2 mutants accumulate less proline in response to salt stress than wild-type seedlings. They have increased evidence of oxdative stress in response to salt stress than wild type plants. Some genes involved in ROS detoxification are differentially expressed in WT and p5cs1-2 mutants.,p5cs1-3 mutants accumulate less proline in response to salt stress than wild-type seedlings.,Decreased root elongation and decreased dry weight for plants grown under low water potential conditions.,Response to lower water potential results in an NADP/NADPH ratio that is altered (lower) with respect to wild type. However the NAD/NADH ratio remains the same.,p5cs1-4 mutants accumulate less proline in response to salt stress than wild-type seedlings. Their roots are hypersensitive to salt stress and they have increased evidence of oxdative stress and lipid peroxidation under salt stress than wild type plants. Some genes involved in ROS detoxification are differentially expressed in WT and p5cs1-4 mutants.,homozygous p5cs2-1 mutants arrest during embryo development. Embryos rescued from dissected seeds can give rise to viable seedlings when cultured with 10 mM proline but some still show developmental defects such as abnormal cotyledon shape. Lethality in response to salt stress-L. Szabados-2008,Embryo defective; Cotyledon-C. Koncz-2007 FUNCTION: P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.,FUNCTION: P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants. {ECO:0000256|PIRNR:PIRNR036429}. PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 1/2.; PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 2/2.,PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 1/2. {ECO:0000256|PIRNR:PIRNR036429}.; PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 2/2. {ECO:0000256|PIRNR:PIRNR036429}. ARA:AT2G39800-MONOMER;MetaCyc:AT2G39800-MONOMER;,ARA:AT3G55610-MONOMER; R-ATH-70614; 2.7.2.11; 1.2.1.41 77702,78871,66759,67691,77437 Delta-1-pyrroline-5-carboxylate synthase A (P5CS A) [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)],Delta-1-pyrroline-5-carboxylate synthase B (P5CS B) [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)],AT2G39800 protein (Delta1-pyrroline-5-carboxylate synthase 1),Delta 1-pyrroline-5-carboxylate synthase 2,Delta-1-pyrroline-5-carboxylate synthase [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)] chloroplast [GO:0009507]; cytoplasm [GO:0005737]; membrane [GO:0016020]; ATP binding [GO:0005524]; delta1-pyrroline-5-carboxylate synthetase activity [GO:0017084]; glutamate 5-kinase activity [GO:0004349]; glutamate-5-semialdehyde dehydrogenase activity [GO:0004350]; hyperosmotic salinity response [GO:0042538]; L-proline biosynthetic process [GO:0055129]; pollen development [GO:0009555]; proline biosynthetic process [GO:0006561]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; root development [GO:0048364],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; glutamate 5-kinase activity [GO:0004349]; glutamate-5-semialdehyde dehydrogenase activity [GO:0004350]; embryo development ending in seed dormancy [GO:0009793]; L-proline biosynthetic process [GO:0055129]; pollen development [GO:0009555]; proline biosynthetic process [GO:0006561],glutamate 5-kinase activity [GO:0004349]; glutamate-5-semialdehyde dehydrogenase activity [GO:0004350]; proline biosynthetic process [GO:0006561],cytoplasm [GO:0005737]; glutamate 5-kinase activity [GO:0004349]; glutamate-5-semialdehyde dehydrogenase activity [GO:0004350]; proline biosynthetic process [GO:0006561],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; glutamate 5-kinase activity [GO:0004349]; glutamate-5-semialdehyde dehydrogenase activity [GO:0004350]; L-proline biosynthetic process [GO:0055129] locus:2063907;,locus:2078911; AT2G39800,AT3G55610 delta1-pyrroline-5-carboxylate Delta-1-pyrroline-5-carboxylate synthase 1 (OsP5CS1) [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)],Delta-1-pyrroline-5-carboxylate synthase 2 (OsP5CS2) [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)],Os05g0455500 protein (Fragment) O04226,Q941T1,A0A0P0WNC7 P5CS1_ORYSJ,P5CS2_ORYSJ,A0A0P0WNC7_ORYSJ P5CS1 P5CS Os05g0455500 LOC_Os05g38150 OJ1651_D06.9,P5CS2 Os01g0848200 OsJ_04075 P0005H10.23,Os05g0455500 OSNPB_050455500 FUNCTION: P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants. Involved in abiotic stress tolerance. {ECO:0000269|Ref.8}.,FUNCTION: P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants. Involved in abiotic stress tolerance. {ECO:0000269|Ref.7}. MISCELLANEOUS: Tobacco plants over-expressing P5CS1 and P5CS2 have elevated proline levels and display enhanced abiotic stress tolerance. {ECO:0000269|Ref.8}.,MISCELLANEOUS: Tobacco plants over-expressing P5CS1 and P5CS2 have elevated proline levels and display enhanced abiotic stress tolerance. {ECO:0000269|Ref.7}. ENOG411EET8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9BF Q9FT41 Q9FT41_ARATH Uncharacterized protein AT5g24790 27808 Uncharacterized protein AT5g24790 integral component of membrane [GO:0016021] locus:2184590; AT5G24790 Protein of unknown function DUF599 NA NA NA NA NA NA NA ENOG411DQ61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EAFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated NA NA NA NA NA NA NA ENOG411E8HJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8HH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin assembly protein Os05g0426100 protein (Putative clathrin assembly protein),Os01g0945500 protein,Os09g0472400 protein Q60EC1,A0A0P0VCQ0,A0A0P0XNR6 Q60EC1_ORYSJ,A0A0P0VCQ0_ORYSJ,A0A0P0XNR6_ORYSJ Os05g0426100 OSJNBa0044P19.6 OSNPB_050426100,Os01g0945500 OSNPB_010945500,Os09g0472400 OSNPB_090472400 ENOG411DZE7 Q9SVM0,Q1G320 Y3078_ARATH,Q1G320_ARATH BTB/POZ domain-containing protein At3g50780,BTB/POZ domain protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 58481,7516 BTB/POZ domain-containing protein At3g50780,BTB/POZ domain protein protein ubiquitination [GO:0016567] locus:2077927;,locus:4010713654; AT3G50780,AT2G24692 BTB POZ domain-containing protein Expressed protein (F13j11 PRLI-interacting factor G, putative, expressed) (Os03g0769400 protein) Q75KA7 Q75KA7_ORYSJ OSJNBb0106M04.9 LOC_Os03g55950 Os03g0769400 OsJ_12730 OSJNBa0072F13.19 OSNPB_030769400 ENOG411EE0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0324701 protein A0A0P0XLA8 A0A0P0XLA8_ORYSJ Os09g0324701 OSNPB_090324701 ENOG411EE0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411E905 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA wound-induced proteinase inhibitor 1-like NA NA NA NA NA NA NA ENOG411DWF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase Rpb4 Os02g0723300 protein (cDNA, clone: J080032M07, full insert sequence) B7F9H3 B7F9H3_ORYSJ Os02g0723300 OSNPB_020723300 ENOG411DWF6 PILS7,PILS5 Q9FKY4,Q9SHL8,A0A1P8BD12 PILS7_ARATH,PILS5_ARATH,A0A1P8BD12_ARATH Protein PIN-LIKES 7 (Auxin efflux carrier-like protein 7),Protein PIN-LIKES 5 (Auxin efflux carrier-like protein 5),Auxin efflux carrier family protein DISRUPTION PHENOTYPE: Increased root growth and lateral root initiation. {ECO:0000269|PubMed:22504182}. FUNCTION: Involved in cellular auxin homeostasis by regulating auxin metabolism. Regulates intracellular auxin accumulation at the endoplasmic reticulum and thus auxin availability for nuclear auxin signaling. {ECO:0000269|PubMed:22504182}. 43074,43394,39818 Protein PIN-LIKES 7 (Auxin efflux carrier-like protein 7),Protein PIN-LIKES 5 (Auxin efflux carrier-like protein 5),Auxin efflux carrier family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transmembrane transport [GO:0055085],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin homeostasis [GO:0010252]; auxin-activated signaling pathway [GO:0009734]; lateral root formation [GO:0010311]; regulation of growth rate [GO:0040009]; response to auxin [GO:0009733],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in seedlings, rosette and cauline leaves, stems and flowers. {ECO:0000269|PubMed:22504182}.,TISSUE SPECIFICITY: Expressed in seedlings, cauline leaves and flowers. {ECO:0000269|PubMed:22504182}. locus:2156847;,locus:2053908; AT5G65980,AT2G17500 auxin efflux carrier Os09g0554300 protein,Os09g0555100 protein Q0IZR4,B9G4Z8 Q0IZR4_ORYSJ,B9G4Z8_ORYSJ Os09g0554300 Os09g0554300 OsJ_30279 OSNPB_090554300,Os09g0555100 OsJ_30282 OSNPB_090555100 ENOG411DWF1 ITN1 Q9C7A2,F4J181,A0A1I9LLR6,A0A178V8T3 ITN1_ARATH,F4J181_ARATH,A0A1I9LLR6_ARATH,A0A178V8T3_ARATH Ankyrin repeat-containing protein ITN1 (Protein INCREASED TOLERANCE TO NACL),Ankyrin repeat family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings show increased salt-stress tolerance. {ECO:0000269|PubMed:18643991}. Increased salt tolerance. Seedling growth resistant to salt stress-K. Iba-2008 FUNCTION: Involved in salt stress tolerance. May act through abscisic acid (ABA) signaling pathways and promote reactive oxygen species (ROS) production. {ECO:0000269|PubMed:18643991}. 64135,66250,67256,62853 Ankyrin repeat-containing protein ITN1 (Protein INCREASED TOLERANCE TO NACL),Ankyrin repeat family protein integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; cellular protein localization [GO:0034613]; response to salt stress [GO:0009651]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; signal transduction [GO:0007165],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, shoots, leaf vasculature and stems. {ECO:0000269|PubMed:18643991}. locus:2092522;,locus:2075009; AT3G12360,AT3G09550 Ankyrin repeat-containing protein Ankyrin repeat family protein, putative, expressed (Os03g0281000 protein) (cDNA clone:J023099A04, full insert sequence) Q10N66 Q10N66_ORYSJ LOC_Os03g17240 Os03g0281000 OSNPB_030281000 ENOG411DWF3 GFS9 Q8W4P9 Q8W4P9_ARATH CLEC16A-like protein FUNCTION: Involved in membrane trafficking and vacuole development through membrane fusion at the vacuole. Required for membrane trafficking machinery and accumulation of flavonoids in the seed coat. {ECO:0000269|PubMed:25116949}. 94742 CLEC16A-like protein extrinsic component of membrane [GO:0019898]; Golgi apparatus [GO:0005794]; anthocyanin-containing compound biosynthetic process [GO:0009718]; cell fate specification [GO:0001708]; flavonoid transport from endoplasmic reticulum to plant-type vacuole [GO:1903415]; positive regulation of vacuole organization [GO:0044090]; vesicle-mediated transport [GO:0016192] locus:2088917; AT3G28430 Uncharacterised conserved protein Os04g0298600 protein A0A0P0W8B1 A0A0P0W8B1_ORYSJ Os04g0298600 OSNPB_040298600 ENOG411DWF2 FTSHI5 F4J3N2 FTSI5_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic (AtFTSHI5) (Protein EMBRYO DEFECTIVE 2458) (Protein FTSH INACTIVE PROTEASE 5) DISRUPTION PHENOTYPE: Embryo defective. {ECO:0000269|PubMed:24964212, ECO:0000303|PubMed:21286311}. Embryo defective; Globular-D. Meinke-2003 FUNCTION: Required for plastid development during embryogenesis (PubMed:24964212). Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex (Probable). {ECO:0000269|PubMed:24964212, ECO:0000305}. 152258 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic (AtFTSHI5) (Protein EMBRYO DEFECTIVE 2458) (Protein FTSH INACTIVE PROTEASE 5) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; proteolysis [GO:0006508] locus:2103055; AT3G04340 ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411DWF9 TAF4B,TAF4 F4K4L7,Q6SJR1,A0A1P8AM40,A0A1P8AM41,A0A1P8BB52,A0A1P8AM45,A0A1P8AM58,A0A1P8AM38,A0A1P8AM49 TAF4B_ARATH,TAF4_ARATH,A0A1P8AM40_ARATH,A0A1P8AM41_ARATH,A0A1P8BB52_ARATH,A0A1P8AM45_ARATH,A0A1P8AM58_ARATH,A0A1P8AM38_ARATH,A0A1P8AM49_ARATH Transcription initiation factor TFIID subunit 4b (TBP-associated factor 4b) (AtTAF4b),Transcription initiation factor TFIID subunit 4 (TBP-associated factor 4) (AtTAF4),TBP-associated factor 4B,TBP-associated factor 4 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. 93741,80641,73977,63165,87686,79124,68311,73348,76225 Transcription initiation factor TFIID subunit 4b (TBP-associated factor 4b) (AtTAF4b),Transcription initiation factor TFIID subunit 4 (TBP-associated factor 4) (AtTAF4),TBP-associated factor 4B,TBP-associated factor 4 transcription factor TFIID complex [GO:0005669]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123],plasmodesma [GO:0009506]; transcription factor TFIID complex [GO:0005669]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123],transcription factor TFIID complex [GO:0005669]; DNA-templated transcription, initiation [GO:0006352] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2167806;,locus:2199206; AT5G43130,AT1G27720 transcription initiation factor Os02g0654400 protein (Putative TATA-binding protein associated factor) (cDNA clone:J023007I15, full insert sequence),Os03g0441000 protein (Transcription initiation factor TFIID component TAF4 family protein, expressed),Os03g0441000 protein (Fragment) Q6H7I0,Q10IZ0,A0A0P0VZ60,A0A0P0VZ35 Q6H7I0_ORYSJ,Q10IZ0_ORYSJ,A0A0P0VZ60_ORYSJ,A0A0P0VZ35_ORYSJ Os02g0654400 OJ1003_B06.6 OsJ_07773 OSNPB_020654400,Os03g0441000 LOC_Os03g32590 OsJ_11407 OSNPB_030441000,Os03g0441000 OSNPB_030441000 ENOG411DWF8 Q9SS80,Q9LFB9,F4IRZ1 U503A_ARATH,Q9LFB9_ARATH,F4IRZ1_ARATH UPF0503 protein At3g09070, chloroplastic,At5g01170 (Uncharacterized protein F7J8_150),LOW protein: UPF0503-like protein, putative (DUF740) 75441,62295,69179 UPF0503 protein At3g09070, chloroplastic,At5g01170 (Uncharacterized protein F7J8_150),LOW protein: UPF0503-like protein, putative (DUF740) apical plasma membrane [GO:0016324]; chloroplast [GO:0009507]; plasma membrane [GO:0005886]; cotyledon vascular tissue pattern formation [GO:0010588]; phloem development [GO:0010088]; phloem transport [GO:0010233]; root system development [GO:0022622],plasma membrane [GO:0005886]; tissue development [GO:0009888] locus:2095254;,locus:2150109;,locus:2065583; AT3G09070,AT5G01170,AT2G38070 UPF0503 protein At3g09070 Os01g0852400 protein,Os05g0450600 protein (Fragment) Q5N7A8,A0A0P0WN12 Q5N7A8_ORYSJ,A0A0P0WN12_ORYSJ Os01g0852400 OSNPB_010852400 P0529E05.7 P0529H11.42,Os05g0450600 OSNPB_050450600 ENOG411DWFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein BREAST CANCER SUSCEPTIBILITY 1 homolog NA NA NA NA NA NA NA ENOG411DWFT AATL1 Q9SX98 LHTL8_ARATH Lysine histidine transporter-like 8 (Amino acid transporter-like protein 1) FUNCTION: Amino acid transporter. {ECO:0000250}. 57119 Lysine histidine transporter-like 8 (Amino acid transporter-like protein 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2015383; AT1G47670 Lysine histidine LILLIM08, putative, expressed (Os12g0485600 protein) Q2QQS3 Q2QQS3_ORYSJ LOC_Os12g30040 Os12g0485600 OsJ_36108 OSNPB_120485600 ENOG411DWFW PPA1,PPA5,PPA3 Q93V56,O82597,O82793 IPYR1_ARATH,IPYR5_ARATH,IPYR3_ARATH Soluble inorganic pyrophosphatase 1 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 1) (PPase 1),Soluble inorganic pyrophosphatase 5 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 5) (PPase 5),Soluble inorganic pyrophosphatase 3 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 3) (PPase 3) FUNCTION: Catalyzes the irreversible hydrolysis of pyrophosphate (PPi) to phosphate. The MgPPi(2-) complex binds to the enzyme only after a free Mg(2+) ion has bound (Ref.9). No activity with glycerol-3-phosphate, glucose-6-phosphate, p-nitrophenylphosphate, ADP, NADP(+), NAD(+),NADH, NADPH or phosphoribosyl pyrophosphate as substrates (Ref.9). Controls the equilibrium of gluconeogenic reactions in the heterotrophic growth phase of early seedling establishment. Determinates the rate of cytosolic glycolysis, providing carbon for seed storage lipid accumulation (PubMed:22566496). {ECO:0000269|PubMed:22566496, ECO:0000269|Ref.9}. 3.6.1.1 24484,24709,24916 Soluble inorganic pyrophosphatase 1 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 1) (PPase 1),Soluble inorganic pyrophosphatase 5 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 5) (PPase 5),Soluble inorganic pyrophosphatase 3 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 3) (PPase 3) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; inorganic diphosphatase activity [GO:0004427]; magnesium ion binding [GO:0000287]; lipid storage [GO:0019915]; phosphate-containing compound metabolic process [GO:0006796],cytoplasm [GO:0005737]; inorganic diphosphatase activity [GO:0004427]; magnesium ion binding [GO:0000287]; phosphate-containing compound metabolic process [GO:0006796] DEVELOPMENTAL STAGE: Expressed throughout plant development, with a slight reduction during senescence. {ECO:0000303|Ref.9}. TISSUE SPECIFICITY: Ubiquitous. Lower level of expression in ovary, stigma and pollen. {ECO:0000303|Ref.9}.,TISSUE SPECIFICITY: Expressed preferentially in stamen, pollen and flower, and at a low level in lateral roots and root elongation zones. {ECO:0000303|Ref.7}. locus:2200965;,locus:2116997;,locus:2041424; AT1G01050,AT4G01480,AT2G46860 inorganic Os01g0866500 protein (Putative soluble inorganic pyrophosphatase) (cDNA clone:J023060L20, full insert sequence),Os10g0406100 protein (Soluble inorganic pyrophosphatase) (Soluble inorganic pyrophosphatase, putative, expressed) (cDNA clone:J023138M09, full insert sequence),OSJNBa0070M12.12 protein (Os04g0687100 protein) (cDNA clone:006-211-C05, full insert sequence) (cDNA clone:J033073D22, full insert sequence),Os05g0438500 protein (Putative soluble inorganic pyrophosphatase) (cDNA clone:006-211-B08, full insert sequence),Os01g0322300 protein (Soluble inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase)-like protein) Q5N9F4,Q338G1,Q7XTL6,Q75HX3,Q657N1 Q5N9F4_ORYSJ,Q338G1_ORYSJ,Q7XTL6_ORYSJ,Q75HX3_ORYSJ,Q657N1_ORYSJ Os01g0866500 OsJ_04199 OSNPB_010866500 P0505D12.37,Os10g0406100 LOC_Os10g26600 Os10g0406100 OSNPB_100406100,Os04g0687100 Os04g0687100 OsJ_16709 OSJNBa0070M12.12 OSNPB_040687100,Os05g0438500 OsJ_18681 OSJNBb0042J17.9 OSNPB_050438500,P0426D06.34 Os01g0322300 OSNPB_010322300 ENOG411DWFV RPT2 Q682S0,F4INU4 RPT2_ARATH,F4INU4_ARATH Root phototropism protein 2 (BTB/POZ domain-containing protein RPT2),Phototropic-responsive NPH3 family protein Complete loss of root phototropism-K. Okada-2000 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Necessary for root phototropism. Involved in hypocotyl phototropism under high rate but not under low rate light. Regulates stomata opening. Seems to be not involved in chloroplast accumulation and translocation. {ECO:0000250, ECO:0000269|PubMed:10662859, ECO:0000269|PubMed:15031408, ECO:0000269|PubMed:20202166}. PATHWAY: Protein modification; protein ubiquitination. 65854,60600 Root phototropism protein 2 (BTB/POZ domain-containing protein RPT2),Phototropic-responsive NPH3 family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; signal transducer activity [GO:0004871]; phototropism [GO:0009638]; protein ubiquitination [GO:0016567],signal transducer activity [GO:0004871]; phototropism [GO:0009638] TISSUE SPECIFICITY: Expressed in hypocotyls, guard cells and mesophyll cells. {ECO:0000269|PubMed:15031408}. locus:2064357; AT2G30520 Root phototropism protein Os12g0117400 protein (RPT2, putative, expressed),Os11g0118300 protein (Fragment),Os05g0201400 protein Q2QYI8,A0A0P0XY52,A0A0P0WIZ0 Q2QYI8_ORYSJ,A0A0P0XY52_ORYSJ,A0A0P0WIZ0_ORYSJ Os12g0117400 LOC_Os12g02530 OsJ_35014 OSNPB_120117400,Os11g0118300 OSNPB_110118300,Os05g0201400 OSNPB_050201400 ENOG411DWFQ HEMA1,HEMA3,HEMA2 P42804,Q9SJX1,P49294 HEM11_ARATH,HEM13_ARATH,HEM12_ARATH Glutamyl-tRNA reductase 1, chloroplastic (GluTR) (EC 1.2.1.70),Probable glutamyl-tRNA reductase 3, chloroplastic (EC 1.2.1.70),Glutamyl-tRNA reductase 2, chloroplastic (GluTR) (EC 1.2.1.70) DISRUPTION PHENOTYPE: No visible phenotype, but decreased heme content in roots. {ECO:0000269|PubMed:17416636}. no visible phenotype. decreased heme contents in roots. Decreased heme levels in roots; No other phenotypes detected-T. Masuda-2007 FUNCTION: Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Probably involved in the tetrapyrrole synthesis required for the chlorophyll biosynthesis. {ECO:0000269|PubMed:12139011, ECO:0000269|PubMed:7908550}.,FUNCTION: Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). {ECO:0000250}.,FUNCTION: Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). Probably involved in wound-induced supply of heme to defensive hemoproteins outside plastids. {ECO:0000269|PubMed:12139011, ECO:0000269|PubMed:17416636, ECO:0000269|PubMed:8605295}. MISCELLANEOUS: During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA (By similarity). {ECO:0000250}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis.; PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2.,PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT1G58290-MONOMER;MetaCyc:AT1G58290-MONOMER;,ARA:AT2G31250-MONOMER;,ARA:AT1G09940-MONOMER;MetaCyc:AT1G09940-MONOMER; 1.2.1.70 59515,58691,58292 Glutamyl-tRNA reductase 1, chloroplastic (GluTR) (EC 1.2.1.70),Probable glutamyl-tRNA reductase 3, chloroplastic (EC 1.2.1.70),Glutamyl-tRNA reductase 2, chloroplastic (GluTR) (EC 1.2.1.70) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; protein complex [GO:0043234]; glutamyl-tRNA reductase activity [GO:0008883]; NADP binding [GO:0050661]; chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782],chloroplast [GO:0009507]; glutamyl-tRNA reductase activity [GO:0008883]; NADP binding [GO:0050661]; chlorophyll biosynthetic process [GO:0015995]; protoporphyrinogen IX biosynthetic process [GO:0006782],chloroplast [GO:0009507]; plastid [GO:0009536]; glutamyl-tRNA reductase activity [GO:0008883]; NADP binding [GO:0050661]; chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782]; response to oxidative stress [GO:0006979]; tetrapyrrole biosynthetic process [GO:0033014] TISSUE SPECIFICITY: Strongly expressed in photosynthetic tissues. Detected in all tissues tested. {ECO:0000269|PubMed:11309145, ECO:0000269|PubMed:12139011, ECO:0000269|PubMed:7908550}.,TISSUE SPECIFICITY: Expressed in roots and flowers. Detected in leaves, hypocotyls and cotyledons. {ECO:0000269|PubMed:11309145, ECO:0000269|PubMed:12139011, ECO:0000269|PubMed:17416636, ECO:0000269|PubMed:8605295}. locus:2016605;,locus:2042516;,locus:2024392; AT1G58290,AT2G31250,AT1G09940 glutamyl-trna reductase Glutamyl-tRNA reductase, chloroplastic (GluTR) (EC 1.2.1.70),Os10g0502400 protein (Fragment) P0C587,A0A0N7KS13 HEM1_ORYSJ,A0A0N7KS13_ORYSJ Os10g0502400 LOC_Os10g35840 OSJNBa0078O01.14 OSJNBb0073N24.1,Os10g0502400 OSNPB_100502400 FUNCTION: Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). {ECO:0000250}. MISCELLANEOUS: During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA (By similarity). {ECO:0000250}. ENOG411DWFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thylakoid membrane protein Os08g0359000 protein (cDNA clone:J013070L06, full insert sequence) Q6YZK5 Q6YZK5_ORYSJ Os08g0359000 Os08g0359000 OSNPB_080359000 P0488B06.35 ENOG411DWFS XTH2,XTH1 Q9SV60,Q9SV61 XTH2_ARATH,XTH1_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2 (At-XTH2) (XTH-2) (EC 2.4.1.207),Putative xyloglucan endotransglucosylase/hydrolase protein 1 (At-XTH1) (XTH-1) (EC 2.4.1.207) FUNCTION: May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. ARA:AT4G13090-MONOMER;,ARA:AT4G13080-MONOMER; 2.4.1.207 33525,33247 Xyloglucan endotransglucosylase/hydrolase protein 2 (At-XTH2) (XTH-2) (EC 2.4.1.207),Putative xyloglucan endotransglucosylase/hydrolase protein 1 (At-XTH1) (XTH-1) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] locus:2123201;,locus:2123281; AT4G13090,AT4G13080 Xyloglucan endotransglucosylase hydrolase protein Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) A0A0P0WUV5 A0A0P0WUV5_ORYSJ Os06g0237400 OSNPB_060237400 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DWFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family HVA22-like protein Q2R1K3 Q2R1K3_ORYSJ LOC_Os11g38920 Os11g0602300 OsJ_34426 OSNPB_110602300 ENOG411DWFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cell division control protein 14 SIN component Os10g0520900 protein A0A0P0XWE9 A0A0P0XWE9_ORYSJ Os10g0520900 OSNPB_100520900 ENOG411DWFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0773400 protein A0A0P0V8X3 A0A0P0V8X3_ORYSJ Os01g0773400 OSNPB_010773400 ENOG411DWFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon-like protein Reticulon-like protein Q9AY66 Q9AY66_ORYSJ Os03g0781700 LOC_Os03g56900 Os03g0781700 OSJNBa0091J19.7 OSNPB_030781700 ENOG411DWFD Q9T0H0,Q84WW4 Q9T0H0_ARATH,Q84WW4_ARATH RING/U-box superfamily protein (Uncharacterized protein AT4g13490) (Uncharacterized protein T6G15.40),RING finger family protein (RING/U-box superfamily protein) (Uncharacterized protein At3g05545) 24904,45509 RING/U-box superfamily protein (Uncharacterized protein AT4g13490) (Uncharacterized protein T6G15.40),RING finger family protein (RING/U-box superfamily protein) (Uncharacterized protein At3g05545) ubiquitin-protein transferase activity [GO:0004842] locus:2140857;,locus:1005716577; AT4G13490,AT3G05545 zinc finger C3HC4 type domain containing protein expressed Os01g0350900 protein (cDNA clone:J023044E12, full insert sequence),Os05g0154600 protein (Fragment),Os05g0154600 protein,Os01g0350900 protein (Fragment) B7EHI9,Q0DKM6,A0A0P0WIE7,A0A0P0V2B1 B7EHI9_ORYSJ,Q0DKM6_ORYSJ,A0A0P0WIE7_ORYSJ,A0A0P0V2B1_ORYSJ Os01g0350900 OSNPB_010350900,Os05g0154600 Os05g0154600 OSNPB_050154600,Os05g0154600 OSNPB_050154600 ENOG411DWFF U2B'' Q8H1S6,O22922,A0A1P8AQM1,A0A1P8AQQ1,A0A1P8AZB8,A0A1P8AQK9 RU2B2_ARATH,RU2B1_ARATH,A0A1P8AQM1_ARATH,A0A1P8AQQ1_ARATH,A0A1P8AZB8_ARATH,A0A1P8AQK9_ARATH U2 small nuclear ribonucleoprotein B'' 2 (U2 snRNP B'' 2),U2 small nuclear ribonucleoprotein B'' (U2 snRNP B''),RNA-binding (RRM/RBD/RNP motifs) family protein,U2 small nuclear ribonucleoprotein B FUNCTION: Involved in nuclear pre-mRNA splicing. {ECO:0000250}. R-ATH-72163; 26223,26237,17125,15366,18488,16294 U2 small nuclear ribonucleoprotein B'' 2 (U2 snRNP B'' 2),U2 small nuclear ribonucleoprotein B'' (U2 snRNP B''),RNA-binding (RRM/RBD/RNP motifs) family protein,U2 small nuclear ribonucleoprotein B Cajal body [GO:0015030]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; spliceosomal complex [GO:0005681]; U2 snRNP [GO:0005686]; snRNA stem-loop binding [GO:0035614]; mRNA splicing, via spliceosome [GO:0000398],Cajal body [GO:0015030]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; spliceosomal complex [GO:0005681]; U2 snRNP [GO:0005686]; snRNA stem-loop binding [GO:0035614]; cis assembly of pre-catalytic spliceosome [GO:0000354],RNA binding [GO:0003723],intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]; RNA binding [GO:0003723] locus:2007417;,locus:2065742; AT1G06960,AT2G30260 U2 small nuclear ribonucleoprotein U2 small nuclear ribonucleoprotein B'' (U2 snRNP B'') Q10MR0 RU2B_ORYSJ Os03g0298800 LOC_Os03g18720 OsJ_10509 FUNCTION: Involved in nuclear pre-mRNA splicing. {ECO:0000250}. ENOG411DWFB GL2 P46607,A0A1P8AMA1,A0A1P8AMA9,F4HQC0,A0A1P8AMA2 HGL2_ARATH,A0A1P8AMA1_ARATH,A0A1P8AMA9_ARATH,F4HQC0_ARATH,A0A1P8AMA2_ARATH Homeobox-leucine zipper protein GLABRA 2 (HD-ZIP protein ATHB-10) (Homeobox-leucine zipper protein ATHB-10),HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein No leaf trichomes. Has lower seed density and higher (8% increase) seed oil content. No difference in seed size weight or fatty acid composition. Abnormal trichome and root hair development-D. Marks-1994 FUNCTION: Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. 83207,76897,70679,86537,58402 Homeobox-leucine zipper protein GLABRA 2 (HD-ZIP protein ATHB-10) (Homeobox-leucine zipper protein ATHB-10),HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; epidermal cell fate specification [GO:0009957]; negative regulation of trichoblast fate specification [GO:0010062] TISSUE SPECIFICITY: Expressed in developing trichomes. locus:2017874; AT1G79840 Homeobox-leucine zipper protein GLABRA Homeobox-leucine zipper protein ROC9 (GLABRA 2-like homeobox protein 9) (HD-ZIP protein ROC9) (Homeodomain transcription factor ROC9) (Protein RICE OUTERMOST CELL-SPECIFIC 9),Os01g0634400 protein,Os01g0760800 protein (Fragment) Q5JMF3,A0A0P0V5N6,A0A0P0V8J2 ROC9_ORYSJ,A0A0P0V5N6_ORYSJ,A0A0P0V8J2_ORYSJ ROC9 GL2-9 Os01g0760800 LOC_Os01g55549 P0460E08.22 P0512C01.11,Os01g0634400 OSNPB_010634400,Os01g0760800 OSNPB_010760800 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DWFM MCM2 Q9LPD9,F4HPK7 MCM2_ARATH,F4HPK7_ARATH DNA replication licensing factor MCM2 (EC 3.6.4.12) (Minichromosome maintenance protein 2) (AtMCM2),DNA helicase (EC 3.6.4.12) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:19650778}. Embryo defective; Preglobular-C. Raynaud-2009 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. May play a crucial role in the control of de-differentiation and cell proliferation processes required for lateral root formation. Is essential for embryo development. Is involved in the geminivirus mungbean yellow mosaic virus (MYMV) DNA replication, presumably in conjunction with other host factors. {ECO:0000269|PubMed:19650778, ECO:0000269|PubMed:23242774}. MISCELLANEOUS: Over-expression of MCM2 strongly reduces plant and cell sizes and inhibits endoreduplication. {ECO:0000305|PubMed:19650778}. R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69052;R-ATH-69300; Meiosis - yeast (04113),DNA replication (03030),Cell cycle - yeast (04111),Cell cycle (04110) 3.6.4.12 105584,105381 DNA replication licensing factor MCM2 (EC 3.6.4.12) (Minichromosome maintenance protein 2) (AtMCM2),DNA helicase (EC 3.6.4.12) cytosol [GO:0005829]; MCM complex [GO:0042555]; THO complex [GO:0000347]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; metal ion binding [GO:0046872]; cell cycle [GO:0007049]; DNA replication initiation [GO:0006270]; DNA unwinding involved in DNA replication [GO:0006268]; embryo development ending in seed dormancy [GO:0009793]; regulation of cell proliferation [GO:0042127]; regulation of root meristem growth [GO:0010082]; root development [GO:0048364]; viral process [GO:0016032],MCM complex [GO:0042555]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; DNA replication initiation [GO:0006270] TISSUE SPECIFICITY: Expressed in root apical meristem, lateral root meristem primordia, leaf primordia, shoot apical meristem and flower buds. {ECO:0000269|PubMed:19357199, ECO:0000269|PubMed:19650778}. locus:2028240; AT1G44900 DNA replication licensing factor DNA replication licensing factor MCM2 (EC 3.6.4.12) (Minichromosome maintenance protein 2) (OsMCM2) Q2R482 MCM2_ORYSJ MCM2 Os11g0484300 LOC_Os11g29380 OsJ_33907 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. Can complement the fission yeast mcm2 mutant. {ECO:0000269|PubMed:18755073}. ENOG411DWFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411DWFI Q9LT09 Q9LT09_ARATH 50S ribosomal protein L24 (At5g23535) (KOW domain-containing protein) 17498 50S ribosomal protein L24 (At5g23535) (KOW domain-containing protein) ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954880; AT5G23535 ribosomal protein L24 Os11g0139100 protein (Ribosomal protein L24 containing protein, expressed) (cDNA clone:J023140O18, full insert sequence),Os12g0135900 protein (Ribosomal protein L24 containing protein, expressed) Q2RAS9,Q2QY18 Q2RAS9_ORYSJ,Q2QY18_ORYSJ Os11g0139100 LOC_Os11g04370 Os11g0139100 OsJ_32901 OSNPB_110139100,Os12g0135900 LOC_Os12g04160 OsJ_35151 OSNPB_120135900 ENOG411DWFH GPAT6 O80437 GPAT6_ARATH Glycerol-3-phosphate 2-O-acyltransferase 6 (AtGPAT6) (EC 2.3.1.198) (Glycerol-3-phosphate acyltransferase 6) Complete loss of cuticle and nanoridges on petals-F. Beisson-2009 FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-2 position of glycerol-3-phosphate, a step in cutin biosynthesis. {ECO:0000269|PubMed:20551224}. 2.3.1.198;3.1.3.B13; 2.3.1.198 56139 Glycerol-3-phosphate 2-O-acyltransferase 6 (AtGPAT6) (EC 2.3.1.198) (Glycerol-3-phosphate acyltransferase 6) integral component of membrane [GO:0016021]; membrane [GO:0016020]; glycerol-3-phosphate 2-O-acyltransferase activity [GO:0090447]; phosphatase activity [GO:0016791]; sn-2-glycerol-3-phosphate omega-OH-C22:0-CoA acyl transferase activity [GO:0102419]; cutin biosynthetic process [GO:0010143]; flower development [GO:0009908]; phospholipid biosynthetic process [GO:0008654] TISSUE SPECIFICITY: Specifically expressed in flower buds. {ECO:0000269|PubMed:12897259}. locus:2042947; AT2G38110 glycerol-3-phosphate acyltransferase Os01g0855000 protein (Phospholipid/glycerol acyltransferase-like protein) (cDNA clone:001-205-C03, full insert sequence) (cDNA clone:J023064I03, full insert sequence) Q5N7U2 Q5N7U2_ORYSJ B1096A10.22-1 Os01g0855000 OsJ_04114 OSNPB_010855000 ENOG411DWFK GLIP3,GLIP2,GLIP1,F15I1.5 Q9SYF5,Q9SYF0,Q9FLN0,Q9SYF3 GLIP3_ARATH,GLIP2_ARATH,GLIP1_ARATH,Q9SYF3_ARATH GDSL esterase/lipase 3 (EC 3.1.1.-) (Extracellular lipase 3),GDSL esterase/lipase 2 (EC 3.1.1.-) (Extracellular lipase 2),GDSL esterase/lipase 1 (EC 3.1.1.-) (Extracellular lipase 1),F15I1.5 (GDSL esterase/lipase-like protein) DISRUPTION PHENOTYPE: In glip2, enhanced auxin responses, and higher susceptibility to E.carotovora. {ECO:0000269|PubMed:19146828}.,DISRUPTION PHENOTYPE: In the resistant cv. Columbia (glip1-1 and glip1-2), confers susceptibility to A.brassicicola. {ECO:0000269|PubMed:16126835}. has increased number of lateral roots hypocotyls have impaired gravitropic curvature,Highly susceptible to fungal pathogen Alternaria brassisicola. Increased lateral root number; Decreased root gravitropism; Susceptible to bacterial infection-O. Park-2009,Susceptible to Alternaria brassicicola-O. Park-2005 FUNCTION: Involved in the resistance to the necrotropic bacteria Erwinia carotovora, probably via negative regulation of auxin signaling. Possesses lipase and antimicrobial activities, inhibiting germination of fungal spores (e.g. Alternaria brassicicola). {ECO:0000269|PubMed:19146828}.,FUNCTION: Confers resistance to the necrotrophic fungus Alternaria brassicicola. Possesses lipase and antimicrobial activities that directly disrupt fungal spore integrity. Triggers systemic resistance, mostly by the ethylene-dependent pathway. {ECO:0000269|PubMed:16126835}. ARA:AT1G53990-MONOMER;,ARA:AT1G53940-MONOMER;,ARA:AT5G40990-MONOMER; 3.1.1.- 41110,42014,41706,10977 GDSL esterase/lipase 3 (EC 3.1.1.-) (Extracellular lipase 3),GDSL esterase/lipase 2 (EC 3.1.1.-) (Extracellular lipase 2),GDSL esterase/lipase 1 (EC 3.1.1.-) (Extracellular lipase 1),F15I1.5 (GDSL esterase/lipase-like protein) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; lipase activity [GO:0016298]; auxin-activated signaling pathway [GO:0009734]; defense response, incompatible interaction [GO:0009814]; lipid catabolic process [GO:0016042]; lipid metabolic process [GO:0006629]; negative regulation of auxin mediated signaling pathway [GO:0010930]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751],extracellular space [GO:0005615]; intracellular [GO:0005622]; lipase activity [GO:0016298]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to fungus, incompatible interaction [GO:0009817]; induced systemic resistance, ethylene mediated signaling pathway [GO:0009866]; jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway [GO:0009871]; lipid catabolic process [GO:0016042]; response to fungus [GO:0009620]; response to salicylic acid [GO:0009751]; systemic acquired resistance [GO:0009627],lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed seedlings, roots and stems. {ECO:0000269|PubMed:19146828}. locus:2014450;,locus:2163021;,locus:2014430; AT1G53990,AT1G53940,AT5G40990,AT1G53970 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411DWFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os01g0945800 protein (RNA-binding like protein) (cDNA clone:001-035-H04, full insert sequence) (cDNA clone:J023143E01, full insert sequence),Os05g0376000 protein Q5JKI1,A0A0P0WLK9 Q5JKI1_ORYSJ,A0A0P0WLK9_ORYSJ Os01g0945800 Os01g0945800 OSNPB_010945800 P0614D08.35,Os05g0376000 OSNPB_050376000 ENOG411E0QP Q9FWW5 Y1215_ARATH WEB family protein At1g12150 62650 WEB family protein At1g12150 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2201961; AT1G12150 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411E0QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0214800 protein (Putative esterase),Os01g0214800 protein (Putative esterase) (cDNA clone:J013001E04, full insert sequence),Os01g0214800 protein Q5QN43,Q9LHX8,A0A0P0UZL1 Q5QN43_ORYSJ,Q9LHX8_ORYSJ,A0A0P0UZL1_ORYSJ Os01g0214800 P0515G01.13-2 OSJNBa0038J17.35-2 OSNPB_010214800,P0515G01.13-1 Os01g0214800 OSJNBa0038J17.35-1 OSNPB_010214800,Os01g0214800 OSNPB_010214800 ENOG411E0QS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter Os01g0872500 protein (Putative amino acid/peptide transporter) (cDNA clone:J013134D13, full insert sequence),Os01g0872500 protein Q5N733,A0A0P0VAW7 Q5N733_ORYSJ,A0A0P0VAW7_ORYSJ P0491F11.13-1 Os01g0872500 OSNPB_010872500,Os01g0872500 OSNPB_010872500 ENOG411E0QX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os10g0473950 protein A0A0P0XVU8 A0A0P0XVU8_ORYSJ Os10g0473950 OSNPB_100473950 ENOG411E0QY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0124600 protein (Putative Heterogeneous nuclear ribonucleoprotein) Q84Z04 Q84Z04_ORYSJ P0474G09.114 Os07g0124600 OsJ_22946 OSNPB_070124600 ENOG411E0QZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh Os04g0681500 protein (cDNA clone:001-128-E08, full insert sequence) Q0J8Y3 Q0J8Y3_ORYSJ Os04g0681500 Os04g0681500 OSNPB_040681500 ENOG411E0QA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0640200 protein (Fragment) A0A0P0VME3,A0A0P0VMA0 A0A0P0VME3_ORYSJ,A0A0P0VMA0_ORYSJ Os02g0640200 OSNPB_020640200 ENOG411E0QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA Polymerase Os08g0171600 protein Q0J7Q4 Q0J7Q4_ORYSJ Os08g0171600 Os08g0171600 OSNPB_080171600 ENOG411E0QN CSLD4 Q9SZL9 CSLD4_ARATH Cellulose synthase-like protein D4 (AtCslD4) (EC 2.4.1.-) Complete male gametophyte defective-W. Willats-2008 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ARA:AT4G38190-MONOMER; 2.4.1.- 124595 Cellulose synthase-like protein D4 (AtCslD4) (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall organization or biogenesis [GO:0071669]; pollen germination [GO:0009846] locus:2121080; AT4G38190 cellulose Cellulose synthase-like protein D3 (EC 2.4.1.-) (OsCslD3),Os08g0345500 protein Q7EZW6,A0A0P0XES5 CSLD3_ORYSJ,A0A0P0XES5_ORYSJ CSLD3 Os08g0345500 LOC_Os08g25710 OsJ_025895 P0410E11.117,Os08g0345500 OSNPB_080345500 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ENOG411E86P Q9ZPZ0 Q9ZPZ0_ARATH Uncharacterized protein At2g46490 14570 Uncharacterized protein At2g46490 locus:2039964; AT2G46490 NA NA NA NA NA NA NA NA ENOG411EBGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DRFN Q9SD33 U183_ARATH UPF0183 protein At3g51130 45682 UPF0183 protein At3g51130 locus:2080873; AT3G51130 UPF0183 protein Os06g0714000 protein (Fragment) A0A0P0X176 A0A0P0X176_ORYSJ Os06g0714000 OSNPB_060714000 ENOG411DRFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved Germin-like protein 3-3,Germin-like protein 3-5,Putative germin-like protein 3-4,Germin-like protein 3-6 Q851J8,Q851K0,Q851J9,Q851K1 GL33_ORYSJ,GL35_ORYSJ,GL34_ORYSJ,GL36_ORYSJ Os03g0693700 LOC_Os03g48750 OsJ_011704 OSJNBb0021O11.14,Os03g0693900 LOC_Os03g48770 OSJNBb0021O11.12,Os03g0693800 LOC_Os03g48760 OsJ_011705 OSJNBb0021O11.13,Os03g0694000 LOC_Os03g48780 OsJ_011707 OSJNBb0021O11.11 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DRFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os04g0489600 protein (cDNA clone:J013131B20, full insert sequence),Os04g0489600 protein Q0JC65,A0A0P0WBU0 Q0JC65_ORYSJ,A0A0P0WBU0_ORYSJ Os04g0489600 Os04g0489600 OSNPB_040489600,Os04g0489600 OSNPB_040489600 ENOG411DRFJ Q8LDU5 PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400, mitochondrial 53250 Pentatricopeptide repeat-containing protein At4g01400, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT4G01400 PPR repeat Os09g0532500 protein (Fragment),Os09g0532800 protein A0A0P0XQA7,A0A0P0XPJ4 A0A0P0XQA7_ORYSJ,A0A0P0XPJ4_ORYSJ Os09g0532500 OSNPB_090532500,Os09g0532800 OSNPB_090532800 ENOG411DRFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os12g0539700 protein (Fragment),Os01g0646700 protein (Fragment),Os07g0418100 protein (Fragment),Os12g0539700 protein,Os12g0625200 protein (Fragment),Os05g0523100 protein (Fragment),Os11g0671600 protein (Fragment) A0A0N7KU57,A0A0P0YAX0,A0A0N7KDE7,A0A0P0X5A9,A0A0P0YAU8,A0A0P0YC90,A0A0P0WPN2,A0A0P0Y555 A0A0N7KU57_ORYSJ,A0A0P0YAX0_ORYSJ,A0A0N7KDE7_ORYSJ,A0A0P0X5A9_ORYSJ,A0A0P0YAU8_ORYSJ,A0A0P0YC90_ORYSJ,A0A0P0WPN2_ORYSJ,A0A0P0Y555_ORYSJ Os12g0539700 OSNPB_120539700,Os01g0646700 OSNPB_010646700,Os07g0418100 OSNPB_070418100,Os12g0625200 OSNPB_120625200,Os05g0523100 OSNPB_050523100,Os11g0671600 OSNPB_110671600 ENOG411DRFD F4J6V1 F4J6V1_ARATH Duplicated homeodomain-like superfamily protein 181750 Duplicated homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; histone H3-K9 deacetylation [GO:1990619]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; positive regulation of histone H3-K9 acetylation [GO:2000617]; regulation of leaf senescence [GO:1900055] locus:2100529; AT3G52250 SANT Os05g0126300 protein (Fragment) A0A0P0WHE2 A0A0P0WHE2_ORYSJ Os05g0126300 OSNPB_050126300 ENOG411DRFE NLP2 Q94JV5 NILP2_ARATH Nitrilase-like protein 2 (EC 3.5.-.-) ARA:AT4G08790-MONOMER; 3.5.-.- 33971 Nitrilase-like protein 2 (EC 3.5.-.-) plastid [GO:0009536]; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810]; nitrogen compound metabolic process [GO:0006807]; response to cadmium ion [GO:0046686] locus:2138208; AT4G08790 nitrilase Hydrolase, carbon-nitrogen family protein, expressed (Os12g0502500 protein) Q2QQ94 Q2QQ94_ORYSJ LOC_Os12g31830 Os12g0502500 OSNPB_120502500 ENOG411DRFF Q9LMT6,Q9FX34,A0A1P8AMW8,A0A1P8AMW3,B3H6Z1 Q9LMT6_ARATH,Q9FX34_ARATH,A0A1P8AMW8_ARATH,A0A1P8AMW3_ARATH,B3H6Z1_ARATH At1g17940 (Endosomal targeting BRO1-like domain-containing protein) (F2H15.16),At1g73390 (Endosomal targeting BRO1-like domain-containing protein) (Uncharacterized protein At1g73390) (Uncharacterized protein T9L24.40),Endosomal targeting BRO1-like domain-containing protein 45081,46753,35935,38131,38020 At1g17940 (Endosomal targeting BRO1-like domain-containing protein) (F2H15.16),At1g73390 (Endosomal targeting BRO1-like domain-containing protein) (Uncharacterized protein At1g73390) (Uncharacterized protein T9L24.40),Endosomal targeting BRO1-like domain-containing protein integral component of membrane [GO:0016021] locus:2030893;,locus:2206845; AT1G17940,AT1G73390 BRO1-like domain Os02g0828100 protein Q0DW77 Q0DW77_ORYSJ Os02g0828100 Os02g0828100 OSNPB_020828100 ENOG411DRFG AT4G00300.1 Q0WQL0 Q0WQL0_ARATH Receptor-like kinase (Uncharacterized protein At4g00300) 53308 Receptor-like kinase (Uncharacterized protein At4g00300) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2126076; AT4G00300 receptor-like protein kinase Os03g0124300 protein,Os03g0124300 protein (Protein kinase, putative, expressed) (cDNA clone:001-207-A01, full insert sequence) Q0DVL3,Q10SF4 Q0DVL3_ORYSJ,Q10SF4_ORYSJ Os03g0124300 Os03g0124300 OSNPB_030124300,Os03g0124300 LOC_Os03g03290 OSNPB_030124300 ENOG411DRFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L-ascorbate Os06g0567200 protein (Putative ascorbate oxidase AO4) (cDNA, clone: J100062O21, full insert sequence) Q5Z645 Q5Z645_ORYSJ Os06g0567200 OSNPB_060567200 P0567G03.23 ENOG411DRFC Q9SIK7,O64668 PSNB_ARATH,PSNA_ARATH Presenilin-like protein At2g29900,Presenilin-like protein At1g08700 FUNCTION: Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. {ECO:0000250}. R-ATH-6798695; Wnt signaling pathway (04310),Alzheimer's disease (05010),Neurotrophin signaling pathway (04722),Notch signaling pathway (04330) 44012,49308 Presenilin-like protein At2g29900,Presenilin-like protein At1g08700 endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; Golgi-associated vesicle [GO:0005798]; integral component of plasma membrane [GO:0005887]; intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634]; aspartic-type endopeptidase activity [GO:0004190]; endopeptidase activity [GO:0004175]; Notch signaling pathway [GO:0007219]; protein processing [GO:0016485] locus:2052080;,locus:2025640; AT2G29900,AT1G08700 presenilin Presenilin (EC 3.4.23.-),Presenilin (EC 3.4.23.-) (Fragment) C7J054,A0A0P0V1R2 C7J054_ORYSJ,A0A0P0V1R2_ORYSJ Os03g0603700 Os03g0603800 OSNPB_030603800,Os01g0276400 OSNPB_010276400 FUNCTION: Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. {ECO:0000256|RuleBase:RU361148}. ENOG411DRFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 55 (OsPP2C55) (EC 3.1.3.16),Probable protein phosphatase 2C 56 (OsPP2C56) (EC 3.1.3.16) Q652Z7,Q0DBU3 P2C55_ORYSJ,P2C56_ORYSJ Os06g0526700 LOC_Os06g33530 OsJ_020683 OSJNBa0043B22.24 P0001B01.4,Os06g0526800 Os06g0526950 LOC_Os06g33549 OsJ_020684 OSJNBa0043B22.28 P0001B01.8 ENOG411DRFY MXC17.7 Q9FIR7 Q9FIR7_ARATH Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (Uncharacterized protein At5g24680) 44315 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (Uncharacterized protein At5g24680) locus:2176821; AT5G24680 Zinc finger with UFM1-specific peptidase domain Os02g0106700 protein (Fragment) A0A0P0VDR8 A0A0P0VDR8_ORYSJ Os02g0106700 OSNPB_020106700 ENOG411DRFZ PGR Q0WP96 PGR_ARATH Protein PGR (AtPGR) (Plasma membrane glucose-responsive regulator) (Transmembrane protein 19-like protein) (VTE6-related protein) (VTE6R) FUNCTION: Involved in the glucose-triggered developmental leaf growth process. {ECO:0000269|Ref.6}. 30518 Protein PGR (AtPGR) (Plasma membrane glucose-responsive regulator) (Transmembrane protein 19-like protein) (VTE6-related protein) (VTE6R) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Expressed in the vasculature of leaves, roots, inflorescences, siliques, anther filaments and sepals. Detected primarily in the phloem tissues, including in the root ans shoot apical meristems. {ECO:0000269|Ref.6}. locus:2147705; AT5G19930 transmembrane protein 19-like Integral membrane protein-like (Os01g0507300 protein) (cDNA clone:J013111E19, full insert sequence),Os01g0178200 protein Q5QMR4,Q5VRD8 Q5QMR4_ORYSJ,Q5VRD8_ORYSJ Os01g0507300 OSJNBa0094H06.21 OSNPB_010507300,Os01g0178200 Os01g0178200 OsJ_00600 OSNPB_010178200 P0406H10.2 P0509B06.4 ENOG411DRFT A1L4Y2,Q8VZ49,A0A1P8AX34,A8MR36 ADHL3_ARATH,ADHL4_ARATH,A0A1P8AX34_ARATH,A8MR36_ARATH Alcohol dehydrogenase-like 3 (EC 1.1.1.1),Alcohol dehydrogenase-like 4 (EC 1.1.1.1),GroES-like zinc-binding alcohol dehydrogenase family protein ARA:AT1G32780-MONOMER; 1.1.1.1 42908,41316,33869,38974 Alcohol dehydrogenase-like 3 (EC 1.1.1.1),Alcohol dehydrogenase-like 4 (EC 1.1.1.1),GroES-like zinc-binding alcohol dehydrogenase family protein cytoplasm [GO:0005737]; alcohol dehydrogenase (NAD) activity [GO:0004022]; zinc ion binding [GO:0008270],oxidation-reduction process [GO:0055114],oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270] locus:2035619; AT1G32780,AT1G64710 alcohol dehydrogenase Alcohol dehydrogenase 2, putative, expressed (Os10g0159800 protein) (cDNA clone:006-304-G02, full insert sequence),Os10g0159800 protein (Fragment),Os10g0159800 protein Q10A46,A0A0P0XSK6,A0A0N7KRG8 Q10A46_ORYSJ,A0A0P0XSK6_ORYSJ,A0A0N7KRG8_ORYSJ Os10g0159800 LOC_Os10g07229 Os10g0159800 OSNPB_100159800,Os10g0159800 OSNPB_100159800 ENOG411DRFU PGLP2 Q8GWU0,A0A1P8BHG5 PGP2_ARATH,A0A1P8BHG5_ARATH Phosphoglycolate phosphatase 2 (EC 3.1.3.18),2-phosphoglycolate phosphatase 2 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17478634}. FUNCTION: Dephosphorylates 2-phosphoglycolate, but does not contribute to photorespiratory metabolism. {ECO:0000269|PubMed:17478634}. 3.1.3.18 33012,24571 Phosphoglycolate phosphatase 2 (EC 3.1.3.18),2-phosphoglycolate phosphatase 2 chloroplast [GO:0009507]; cytosol [GO:0005829]; phosphatase activity [GO:0016791]; phosphoglycolate phosphatase activity [GO:0008967]; protein serine/threonine kinase activity [GO:0004674]; dephosphorylation [GO:0016311],phosphatase activity [GO:0016791] locus:2160937; AT5G47760 Inherit from KOG: -phosphatase Phosphoglycolate phosphatase (EC 3.1.3.18),Os09g0261300 protein Q6EP66,A0A0P0XKC7 Q6EP66_ORYSJ,A0A0P0XKC7_ORYSJ B1077E10.18-1 P0638A12.7-1 Os09g0261300 OsJ_28581 OSNPB_090261300,Os09g0261300 OSNPB_090261300 ENOG411DRFW BHLH90 Q0WNR2,A0A1P8ARK0,A0A1P8ARJ8 BH090_ARATH,A0A1P8ARK0_ARATH,A0A1P8ARJ8_ARATH Transcription factor bHLH90 (Basic helix-loop-helix protein 90) (AtbHLH90) (bHLH 90) (Transcription factor EN 50) (bHLH transcription factor bHLH090),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 50234,38928,46690 Transcription factor bHLH90 (Basic helix-loop-helix protein 90) (AtbHLH90) (bHLH 90) (Transcription factor EN 50) (bHLH transcription factor bHLH090),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2020003; AT1G10610 Transcription factor NA NA NA NA NA NA NA ENOG411DRFQ KIN13A,KIN13B Q940B8,Q940Y8,F4JKX4 KN13A_ARATH,KN13B_ARATH,F4JKX4_ARATH Kinesin-like protein KIN-13A (AtKINESIN-13A) (AtKIN13A),Kinesin-like protein KIN-13B (AtKINESIN-13B) (AtKIN13B),Kinesin motor protein-like protein DISRUPTION PHENOTYPE: No obvious growth phenotype, but leaf trichomes with 4 branches instead of 3 and decreased size and number of Golgi-associated vesicles in root-cap peripheral cells (PubMed:15574882, PubMed:19939242). Smaller pits in the secondary cell walls of root metaxylem vessels (PubMed:24280391). Enlarged petals and overbranched trichomes (PubMed:25232944). {ECO:0000269|PubMed:15574882, ECO:0000269|PubMed:19939242, ECO:0000269|PubMed:24280391, ECO:0000269|PubMed:25232944}.,DISRUPTION PHENOTYPE: Enlarged petals and leaves. {ECO:0000269|PubMed:25232944}. In the kinesin-13a-1 homozygous mutant trichomes predominantly had four to five branches instead of the two in the wild type Abnormal trichome branching-B. Liu-2005 FUNCTION: Internal motor kinesin involved in trichome morphogenesis (PubMed:15574882). Participates in regulating the formation of Golgi-associated vesicles (PubMed:19939242). Plays a central role in microtubule disassembly via the active ARAC10-ICR5 cascade, which establishes the secondary cell wall pattern in metaxylem vessel cells (PubMed:24280391). Acts redundantly with KIN13B to modulate cell wall synthesis and cell expansion via the THE1 pathway (PubMed:25232944). {ECO:0000269|PubMed:15574882, ECO:0000269|PubMed:19939242, ECO:0000269|PubMed:24280391, ECO:0000269|PubMed:25232944}.,FUNCTION: Acts redundantly with KIN13A to modulate cell wall synthesis and cell expansion via the THE1 pathway. {ECO:0000269|PubMed:25232944}. 89082,76772,13001 Kinesin-like protein KIN-13A (AtKINESIN-13A) (AtKIN13A),Kinesin-like protein KIN-13B (AtKINESIN-13B) (AtKIN13B),Kinesin motor protein-like protein Golgi stack [GO:0005795]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; secondary cell wall [GO:0009531]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; cell growth [GO:0016049]; metaxylem development [GO:0090058]; microtubule depolymerization [GO:0007019]; microtubule-based movement [GO:0007018]; plant-type secondary cell wall biogenesis [GO:0009834]; regulation of cell wall organization or biogenesis [GO:1903338]; trichome morphogenesis [GO:0010090],kinesin complex [GO:0005871]; microtubule [GO:0005874]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; cell growth [GO:0016049]; microtubule-based movement [GO:0007018]; regulation of cell wall organization or biogenesis [GO:1903338],kinesin complex [GO:0005871]; ATPase activity [GO:0016887]; microtubule motor activity [GO:0003777]; microtubule depolymerization [GO:0007019]; microtubule-based movement [GO:0007018]; mitotic sister chromatid segregation [GO:0000070] TISSUE SPECIFICITY: Expressed in leaves, roots, young and mature seedlings (PubMed:15574882, PubMed:19939242). Preferentially expressed in the secondary cell wall pits of differentiating metaxylem vessel cells (at the protein level) (PubMed:24280391). {ECO:0000269|PubMed:15574882, ECO:0000269|PubMed:19939242, ECO:0000269|PubMed:24280391}. locus:2089358;,locus:2093382;,locus:504955420; AT3G16630,AT3G16060,AT4G15885 kinesin-like protein Kinesin-like protein KIN-13A (Protein SMALL AND ROUND SEED 3),Kinesin-like protein KIN-13B,Os01g0625200 protein (Fragment) B9FMJ3,B9EY52,A0A0P0V5G2 KN13A_ORYSJ,KN13B_ORYSJ,A0A0P0V5G2_ORYSJ KIN13A SRS3 Os05g0154700 LOC_Os05g06280 OsJ_17169 OSJNBa0059G01.13 P0431G05.2,KIN13B Os01g0625200 LOC_Os01g43580 OsJ_02667,Os01g0625200 OSNPB_010625200 ENOG411DRFR FHA1,FHA2 Q9SFV6,Q9SFV2 FHA1_ARATH,FHA2_ARATH FHA domain-containing protein FHA1 (Protein FORKHEAD-ASSOCIATED DOMAIN 1) (AtFHA1),FHA domain-containing protein FHA2 (Protein FORKHEAD-ASSOCIATED DOMAIN 2) (AtFHA2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23192389}.,DISRUPTION PHENOTYPE: Slightly enlarged leaves, small siliques with few seed set, severely reduced fertility mainly due to reduced stamen filament elongation and defects in pollen development. Increased polyploidy levels in cotyledon and leaf cells. {ECO:0000269|PubMed:23192389}. FUNCTION: May play a role in the control of plant organ development (By similarity). Does not show transactivation activity in yeast (PubMed:23192389). {ECO:0000250|UniProtKB:Q9SFV2, ECO:0000269|PubMed:23192389}.,FUNCTION: May play a role in the control of plant organ development and specifically in the regulation of stamen development. Does not show transactivation activity in yeast. {ECO:0000269|PubMed:23192389}. 27980,35993 FHA domain-containing protein FHA1 (Protein FORKHEAD-ASSOCIATED DOMAIN 1) (AtFHA1),FHA domain-containing protein FHA2 (Protein FORKHEAD-ASSOCIATED DOMAIN 2) (AtFHA2) nucleus [GO:0005634]; multicellular organism development [GO:0007275],nucleus [GO:0005634]; regulation of developmental growth [GO:0048638]; stamen filament development [GO:0080086] TISSUE SPECIFICITY: Expressed in roots and vascular tissues near the shoot apex in young seedlings. {ECO:0000269|Ref.3}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|Ref.4}. locus:2098540;,locus:2098480; AT3G07260,AT3G07220 FHA domain containing protein Os08g0528900 protein,Os09g0505200 protein,Os11g0463600 protein (Fragment) Q0J485,A0A0P0XNS7,A0A0P0Y222 Q0J485_ORYSJ,A0A0P0XNS7_ORYSJ,A0A0P0Y222_ORYSJ Os08g0528900 Os08g0528900 OSNPB_080528900,Os09g0505200 OSNPB_090505200,Os11g0463600 OSNPB_110463600 ENOG411DRF8 DOT2 Q9LFE0 DOT2_ARATH SART-1 family protein DOT2 (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 2) (Protein MERISTEM-DEFECTIVE) DISRUPTION PHENOTYPE: Dwarf plants with variable number of cotyledons, short petioles in leaves and impaired flowering (PubMed:18643975, PubMed:19000164). Defects in venation pattern in leaves (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000269|PubMed:19000164}. dot2-1 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. They also have an abnormal cotyledon number shorter petioles significantly shorter roots and smaller rosettes when compared to wild-type plants. Seedling lethal; Increased cotyledon number-K. Lindsey-2009 FUNCTION: Plays a role in root, shoot and flower development. Probably required for normal root and shoot meristem organization and maintenance and the proper expression of PIN and PLT genes (PubMed:19000164). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000269|PubMed:19000164}. R-ATH-72163; 94142 SART-1 family protein DOT2 (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 2) (Protein MERISTEM-DEFECTIVE) nucleolus [GO:0005730]; nucleus [GO:0005634]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; cotyledon vascular tissue pattern formation [GO:0010588]; flower development [GO:0009908]; leaf development [GO:0048366]; leaf vascular tissue pattern formation [GO:0010305]; maturation of 5S rRNA [GO:0000481]; meristem structural organization [GO:0009933]; mRNA cis splicing, via spliceosome [GO:0045292]; phloem or xylem histogenesis [GO:0010087]; post-embryonic root development [GO:0048528]; root development [GO:0048364]; shoot system development [GO:0048367]; spliceosomal snRNP assembly [GO:0000387] TISSUE SPECIFICITY: Expressed in lateral root cap, columella, meristem and quiescent center (QC) (PubMed:19000164). Expressed in young leaves (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000269|PubMed:19000164}. locus:2149010; AT5G16780 SART-1 family Os02g0511500 protein (Fragment) A0A0P0VJK6 A0A0P0VJK6_ORYSJ Os02g0511500 OSNPB_020511500 ENOG411DRF9 CYP78A5,''cytochrome P450 Q9LMX7,Q9C9D1 C78A5_ARATH,Q9C9D1_ARATH Cytochrome P450 78A5 (EC 1.14.-.-) (Protein KLUH),Cytochrome P450 family protein (Cytochrome P450, family 78, subfamily A, polypeptide 10) (Putative cytochrome P-450; 4810-6511) DISRUPTION PHENOTYPE: Reduced size of leaves, sepals, petals and seeds. Increased leaf number. {ECO:0000269|PubMed:18061566, ECO:0000269|PubMed:18492871}. FUNCTION: Plays a role in regulating directional growth at the meristem/organ boundary. Is required for the promotion of leaf and floral organ growth and for the prolongation of the plastochron. Promotes organ growth in a non-cell-autonomous manner and may generate a mobile growth signal distinct from the classical phytohormones that prevents premature arrest of proliferation, until the correct primordium size has been reached. Functions probably in association with CYP78A7 in regulating relative growth of the shoot apical meristem and plant organs. Is required locally in developing ovules to stimulates cell proliferation and promote seed growth. {ECO:0000269|PubMed:10476073, ECO:0000269|PubMed:18061566, ECO:0000269|PubMed:18492871, ECO:0000269|PubMed:19892740, ECO:0000269|PubMed:20188559}. MISCELLANEOUS: Plants over-expressing CYP78A5 have twisted and kinked stems, defects in floral organogenesis and reduced fertility. {ECO:0000305|PubMed:10476073}. ARA:AT1G13710-MONOMER;,ARA:AT1G74110-MONOMER; 1.14.-.- 57644,60183 Cytochrome P450 78A5 (EC 1.14.-.-) (Protein KLUH),Cytochrome P450 family protein (Cytochrome P450, family 78, subfamily A, polypeptide 10) (Putative cytochrome P-450; 4810-6511) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; floral organ development [GO:0048437]; organ growth [GO:0035265]; positive regulation of cell proliferation [GO:0008284]; positive regulation of organ growth [GO:0046622]; regulation of growth rate [GO:0040009]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] DEVELOPMENTAL STAGE: Expressed in the inner integument throughout ovule development. {ECO:0000269|PubMed:19892740}. TISSUE SPECIFICITY: Expressed in the periphery of the shoot apical meristem and inflorescence meristem, on the adaxial sides of developing floral organs and in developing ovules in the region where the integuments emerge. {ECO:0000269|PubMed:10476073, ECO:0000269|PubMed:18061566, ECO:0000269|PubMed:20395288}. locus:2023848;,locus:2031491; AT1G13710,AT1G74110 cytochrome P450 Os03g0417700 protein (Putative cytochrome P-450),Cytochrome P450 family protein, expressed (Os11g0489250 protein),CYP78A13 (Os07g0603700 protein) (Putative cytochrome P-450),Os03g0603100 protein Q7Y1K4,Q2R447,Q6YVW3,A0A0P0W0R0 Q7Y1K4_ORYSJ,Q2R447_ORYSJ,Q6YVW3_ORYSJ,A0A0P0W0R0_ORYSJ OSJNBb0056B16.12 Os03g0417700 OSNPB_030417700,Os11g0489250 LOC_Os11g29720 OSNPB_110489250,GIANT EMBRYO Os07g0603700 OSJNBb0039M16.32 OSJNBb0040H10.5 OSNPB_070603700,Os03g0603100 OSNPB_030603100 ENOG411DRF4 PME35,PME16 Q9LYT5,Q9SKX2 PME35_ARATH,PME16_ARATH Probable pectinesterase/pectinesterase inhibitor 35 [Includes: Pectinesterase inhibitor 35 (Pectin methylesterase inhibitor 35); Pectinesterase 35 (PE 35) (EC 3.1.1.11) (Pectin methylesterase 35) (AtPME35)],Probable pectinesterase/pectinesterase inhibitor 16 [Includes: Pectinesterase inhibitor 16 (Pectin methylesterase inhibitor 16); Pectinesterase 16 (PE 16) (EC 3.1.1.11) (AtPMEpcrD) (Pectin methylesterase 16) (AtPME16)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G59010-MONOMER;,ARA:AT2G43050-MONOMER; 3.1.1.11 57513,56589 Probable pectinesterase/pectinesterase inhibitor 35 [Includes: Pectinesterase inhibitor 35 (Pectin methylesterase inhibitor 35); Pectinesterase 35 (PE 35) (EC 3.1.1.11) (Pectin methylesterase 35) (AtPME35)],Probable pectinesterase/pectinesterase inhibitor 16 [Includes: Pectinesterase inhibitor 16 (Pectin methylesterase inhibitor 16); Pectinesterase 16 (PE 16) (EC 3.1.1.11) (AtPMEpcrD) (Pectin methylesterase 16) (AtPME16)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques and trichomes. {ECO:0000269|PubMed:15276459, ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in siliques and floral stems. {ECO:0000269|PubMed:9767082}. locus:2077710;,locus:2053728; AT3G59010,AT2G43050 pectinesterase Pectinesterase (EC 3.1.1.11) Q0DX02 Q0DX02_ORYSJ Os02g0783000 Os02g0783000 OSNPB_020783000 ENOG411DRF5 MAP65-8 Q9C7G0,A0A1P8ATM1 MA658_ARATH,A0A1P8ATM1_ARATH 65-kDa microtubule-associated protein 8 (AtMAP65-8),Microtubule-associated protein 65-8 64603,47517 65-kDa microtubule-associated protein 8 (AtMAP65-8),Microtubule-associated protein 65-8 microtubule [GO:0005874]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cytokinesis [GO:0000910]; microtubule cytoskeleton organization [GO:0000226],microtubule binding [GO:0008017]; cytokinesis [GO:0000910]; microtubule cytoskeleton organization [GO:0000226] locus:2010434; AT1G27920 65-kDa microtubule-associated protein Os08g0531100 protein (Putative microtubule-associated protein) (cDNA clone:J013119G06, full insert sequence) Q6ZJ66 Q6ZJ66_ORYSJ Os08g0531100 Os08g0531100 OJ1789_C07.21 OSNPB_080531100 ENOG411DRF6 MCM5 O80786,F4INF9 MCM5_ARATH,F4INF9_ARATH DNA replication licensing factor MCM5 (EC 3.6.4.12) (Minichromosome maintenance protein 5) (AtMCM5),DNA helicase (EC 3.6.4.12) FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69052;R-ATH-69300; Meiosis - yeast (04113),DNA replication (03030),Cell cycle - yeast (04111),Cell cycle (04110) 3.6.4.12 81015,80815 DNA replication licensing factor MCM5 (EC 3.6.4.12) (Minichromosome maintenance protein 5) (AtMCM5),DNA helicase (EC 3.6.4.12) cytoplasm [GO:0005737]; MCM complex [GO:0042555]; nucleus [GO:0005634]; THO complex [GO:0000347]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; cell cycle [GO:0007049]; DNA replication initiation [GO:0006270]; DNA unwinding involved in DNA replication [GO:0006268],MCM complex [GO:0042555]; nucleus [GO:0005634]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; DNA replication initiation [GO:0006270] TISSUE SPECIFICITY: Expressed in shoot apex and flower buds. {ECO:0000269|PubMed:19357199}. locus:2054698; AT2G07690 DNA replication licensing factor DNA replication licensing factor MCM5 (EC 3.6.4.12) (Minichromosome maintenance protein 5) (OsMCM5) Q6KAJ4 MCM5_ORYSJ MCM5 Os02g0797400 LOC_Os02g55410 OJ1004_E04.32 OsJ_08729 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. ENOG411DRF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF593 Expressed protein (Heavy meromyosin-like protein) (Os03g0789200 protein) (cDNA clone:J023110P10, full insert sequence),Os07g0162200 protein Q84JQ9,Q8H538 Q84JQ9_ORYSJ,Q8H538_ORYSJ LOC_Os03g57530 Os03g0789200 OSJNBa0087O09.6 OSNPB_030789200,OJ1714_H10.145 Os07g0162200 OsJ_23180 OSNPB_070162200 ENOG411DRF0 SD25 Q8RWZ5 SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (EC 2.7.11.1) (S-domain-2 (SD2) receptor kinase 5) (SD2-5) 2.7.11.1 89740 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (EC 2.7.11.1) (S-domain-2 (SD2) receptor kinase 5) (SD2-5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin protein ligase binding [GO:0031625]; protein autophosphorylation [GO:0046777] locus:2116525; AT4G32300 Serine threonine-protein kinase Os06g0494100 protein (cDNA clone:J023036O17, full insert sequence) (cDNA clone:J023083E04, full insert sequence) Q0DC23 Q0DC23_ORYSJ Os06g0494100 Os06g0494100 OSNPB_060494100 ENOG411DRF2 Q9CA69,Q9M9U5 Q9CA69_ARATH,Q9M9U5_ARATH At1g74450/F1M20_13 (BPS1-like protein (DUF793)) (Uncharacterized protein At1g74450) (Uncharacterized protein F1M20.13),At1g18740/F6A14_15 (F6A14.15 protein) (ROH1, putative (DUF793)) 45323,43541 At1g74450/F1M20_13 (BPS1-like protein (DUF793)) (Uncharacterized protein At1g74450) (Uncharacterized protein F1M20.13),At1g18740/F6A14_15 (F6A14.15 protein) (ROH1, putative (DUF793)) cytosol [GO:0005829]; integral component of membrane [GO:0016021]; pollen development [GO:0009555],integral component of membrane [GO:0016021] locus:2019145;,locus:2034959; AT1G74450,AT1G18740 Protein of unknown function (DUF793) Os04g0688000 protein A0A0P0WGQ7 A0A0P0WGQ7_ORYSJ Os04g0688000 OSNPB_040688000 ENOG411DRF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May be involved in modulation of pathogen defense and leaf cell death (By similarity) NA NA NA NA NA NA NA ENOG411E86J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0372500 protein A0A0P0XMV7 A0A0P0XMV7_ORYSJ Os09g0372500 OSNPB_090372500 ENOG411E7KP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0059K02.3 protein (Os04g0649500 protein) (cDNA clone:J013107G06, full insert sequence) Q7XMQ8 Q7XMQ8_ORYSJ Os04g0649500 OsJ_16423 OSJNBb0059K02.3 OSNPB_040649500 ENOG411E7K6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain NA NA NA NA NA NA NA ENOG411E97N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: penicillin-binding protein NA NA NA NA NA NA NA ENOG411EIS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0193700 protein Q688P7 Q688P7_ORYSJ Os05g0193700 OsJ_17418 OSNPB_050193700 P0681D04.10 ENOG411EIS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIS4 T12C14_50,T12C14_80 Q9LZQ5,Q9LZQ2 Q9LZQ5_ARATH,Q9LZQ2_ARATH F-box/associated interaction domain protein (Uncharacterized protein T12C14_50),F-box/associated interaction domain protein (Uncharacterized protein T12C14_80) 26950,37789 F-box/associated interaction domain protein (Uncharacterized protein T12C14_50),F-box/associated interaction domain protein (Uncharacterized protein T12C14_80) locus:2096034;,locus:2096079; AT3G62350,AT3G62380 NA NA NA NA NA NA NA NA ENOG411EIS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0803100 protein) (Unknow protein) Q84SZ3 Q84SZ3_ORYSJ LOC_Os03g58850 Os03g0803100 OSJNBa0087C10.8 OSNPB_030803100 ENOG411EIS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0119100 protein A0A0P0X1Z5 A0A0P0X1Z5_ORYSJ Os07g0119100 OSNPB_070119100 ENOG411EISS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised P-loop hydrolase UPF0079 NA NA NA NA NA NA NA ENOG411EISR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XH domain NA NA NA NA NA NA NA ENOG411EISQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411EISW Q84RJ7 Q84RJ7_ARATH Nonsense-mediated mRNA decay-like protein (Uncharacterized protein At2g34100/T14G11.22) 39672 Nonsense-mediated mRNA decay-like protein (Uncharacterized protein At2g34100/T14G11.22) locus:2055466; AT2G34100 NA NA NA NA NA NA NA NA ENOG411EISV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIST A0A1P8ANJ8,F4KH99 A0A1P8ANJ8_ARATH,F4KH99_ARATH GRF zinc finger protein,Uncharacterized protein 13720,50098 GRF zinc finger protein,Uncharacterized protein zinc ion binding [GO:0008270] locus:504955117; AT5G33393 NA NA NA NA NA NA NA NA ENOG411EISZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: (Membrane-Associated Ring finger (C3HC4)) NA NA NA NA NA NA NA ENOG411EISY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nuclear pore complex protein NA NA NA NA NA NA NA ENOG411EISX Q9SFY8,A8MRN5 Q9SFY8_ARATH,A8MRN5_ARATH Glycine-rich protein family (T22C5.16) (Uncharacterized protein At1g27710),Glycine-rich protein family 19941,19543 Glycine-rich protein family (T22C5.16) (Uncharacterized protein At1g27710),Glycine-rich protein family locus:2199201; AT1G27710 glycine-rich protein NA NA NA NA NA NA NA ENOG411EISC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISE Q9SJZ0 Q9SJZ0_ARATH Non-LTR retroelement reverse transcriptase (Putative non-LTR retroelement reverse transcriptase) 29710 Non-LTR retroelement reverse transcriptase (Putative non-LTR retroelement reverse transcriptase) RNA-directed DNA polymerase activity [GO:0003964] locus:2041268; AT2G22440 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EISD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EISJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: coiled-coil-helix-coiled-coil-helix domain containing CHCH domain containing protein, expressed (Os12g0637900 protein) Q2QLL3 Q2QLL3_ORYSJ LOC_Os12g44080 Os12g0637900 OsJ_37008 OSNPB_120637900 ENOG411EISI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EISH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0724450 protein (Fragment),Os06g0555101 protein A0A0P0V7K6,A0A0N7KM98 A0A0P0V7K6_ORYSJ,A0A0N7KM98_ORYSJ Os01g0724450 OSNPB_010724450,Os06g0555101 OSNPB_060555101 ENOG411EISN Q3E7R1,F4JKS9 Q3E7R1_ARATH,F4JKS9_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Non-LTR retroelement reverse transcriptase 20882,16509 Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Non-LTR retroelement reverse transcriptase nucleic acid binding [GO:0003676]; transferase activity [GO:0016740],nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964] locus:504955484;,locus:504955536; AT4G03292,AT4G09775 Inherit from KOG: Retrotransposon protein Os04g0211600 protein,Os06g0277200 protein,Os10g0430100 protein A0A0P0W7W5,A0A0P0WV64,A0A0N7KRT9 A0A0P0W7W5_ORYSJ,A0A0P0WV64_ORYSJ,A0A0N7KRT9_ORYSJ Os04g0211600 OSNPB_040211600,Os06g0277200 OSNPB_060277200,Os10g0430100 OSNPB_100430100 ENOG411EISM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E7WY TCL2 B3H4X8 TCL2_ARATH MYB-like transcription factor TCL2 (Protein CAPRICE-like MYB4) (Protein TRICHOMELESS 2) FUNCTION: MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}. MISCELLANEOUS: Plants over-expressing TCL2 does not have any trichomes on rosette leaves, inflorescence stems, cauline leaves or floral organs. {ECO:0000305|PubMed:22168948}. 12219 MYB-like transcription factor TCL2 (Protein CAPRICE-like MYB4) (Protein TRICHOMELESS 2) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; negative regulation of transcription, DNA-templated [GO:0045892]; negative regulation of trichome patterning [GO:1900033]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351]; trichome patterning [GO:0048629] TISSUE SPECIFICITY: Expressed in cotyledons, petioles, rosette leaves, hydathodes, cauline leaves, stems, pedicels and flower buds. {ECO:0000269|PubMed:22168948, ECO:0000269|PubMed:22489163}. locus:4515102929; AT2G30424 Transcription factor Os01g0619900 protein (Fragment) A0A0P0V5D3 A0A0P0V5D3_ORYSJ Os01g0619900 OSNPB_010619900 ENOG411E7WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 'Cold-shock' DNA-binding domain NA NA NA NA NA NA NA ENOG411E7WZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7WT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein Os08g0178500 protein (cDNA clone:002-134-C01, full insert sequence),OSJNBa0043L09.18 protein (Os04g0635000 protein) (cDNA clone:001-105-B06, full insert sequence) Q6ZBU1,Q7XQS9 Q6ZBU1_ORYSJ,Q7XQS9_ORYSJ Os08g0178500 Os08g0178500 OJ1120_C08.26 OsJ_26250 OSNPB_080178500 P0577G06.2,Os04g0635000 Os04g0635000 OsJ_16307 OSJNBa0043L09.18 OSNPB_040635000 ENOG411E7WW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0516700 protein Q7EZ60 Q7EZ60_ORYSJ Os07g0516700 Os07g0516700 OsJ_24454 OSJNBa0036M16.108 OSNPB_070516700 P0650C03.23 ENOG411E7WV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0157700 protein (Fragment) A0A0P0Y730 A0A0P0Y730_ORYSJ Os12g0157700 OSNPB_120157700 ENOG411E7WQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant specific eukaryotic initiation factor 4B Os01g0306100 protein (cDNA clone:002-175-B04, full insert sequence) Q0JNC1 Q0JNC1_ORYSJ Os01g0306100 Os01g0306100 OSNPB_010306100 ENOG411E7WP O65687 O65687_ARATH Prostatic spermine-binding-like protein (Uncharacterized protein At4g34630) (Uncharacterized protein T4L20.210) 21822 Prostatic spermine-binding-like protein (Uncharacterized protein At4g34630) (Uncharacterized protein T4L20.210) locus:2139499; AT4G34630 NA NA NA NA NA NA NA NA ENOG411E7WS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os03g0622300 protein,Expressed protein (Os03g0622600 protein) (cDNA clone:002-188-D11, full insert sequence),Os12g0592200 protein Q0DQ91,Q10GL9,A0A0P0YBU1 Q0DQ91_ORYSJ,Q10GL9_ORYSJ,A0A0P0YBU1_ORYSJ Os03g0622300 Os03g0622300 OSNPB_030622300,Os03g0622600 LOC_Os03g42480 Os03g0622600 OSNPB_030622600,Os12g0592200 OSNPB_120592200 ENOG411E7WR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0402500 protein Q6Z280 Q6Z280_ORYSJ Os08g0402500 Os08g0402500 OSJNBa0086F04.32 OSNPB_080402500 ENOG411E7WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: phy rapidly regulated Os01g0630300 protein Q8S2I3 Q8S2I3_ORYSJ Os01g0630300 OsJ_02701 OSJNBb0035I14.13 OSNPB_010630300 ENOG411E7WN O82293 O82293_ARATH At2g35470 (Expressed protein) (Ribosome maturation factor) (Uncharacterized protein At2g35470) 18885 At2g35470 (Expressed protein) (Ribosome maturation factor) (Uncharacterized protein At2g35470) integral component of membrane [GO:0016021] locus:2062395; AT2G35470 NA NA NA NA NA NA NA NA ENOG411E7WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: DAZ interacting protein NA NA NA NA NA NA NA ENOG411E7WH F5K20_120 Q9M344 Q9M344_ARATH C2H2 and C2HC zinc fingers superfamily protein (Putative C2H2-type zinc finger protein) (Uncharacterized protein At3g53820) (Zinc finger (C2H2 type) family protein) 16291 C2H2 and C2HC zinc fingers superfamily protein (Putative C2H2-type zinc finger protein) (Uncharacterized protein At3g53820) (Zinc finger (C2H2 type) family protein) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355] locus:2084390; AT3G53820 ZnF_C2H2 Os02g0100900 protein A3A246 A3A246_ORYSJ Os02g0100900 OsJ_04985 OSNPB_020100900 ENOG411E7WK SUP Q38895 SUP_ARATH Transcriptional regulator SUPERMAN Single whorl of sepals then successive whorls of petals. No stamens or carpels.,Extra stamens. Staminoid carpels. Floral meristem indeterminacy,No carples. Extra stamens formed following a spiral phyllotaxy. Indeterminate floral meristem.,Indeterminate floral meristem. No carpels. Instead stamens are continually produced following a spiral phyllotaxy. Homeotic floral transformations-E. Meyerowitz-1995 FUNCTION: Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development. {ECO:0000269|PubMed:11006335, ECO:0000269|PubMed:11943180, ECO:0000269|PubMed:12324589, ECO:0000269|PubMed:1352237, ECO:0000269|PubMed:7477325}. MISCELLANEOUS: Mutations in SUP cause the ectopic expression of APETALA3 leading to the development of extra stamens at the expense of the central carpels of the flower. 23084 Transcriptional regulator SUPERMAN nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; formation of plant organ boundary [GO:0090691]; hormone-mediated signaling pathway [GO:0009755]; regulation of cell proliferation [GO:0042127]; regulation of cell size [GO:0008361]; specification of floral organ identity [GO:0010093]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed early in the third whorl, and later becomes localized at the boundary between the stamen and carpel whorls. Also detected in developing ovule primordia. locus:2086268; AT3G23130 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E7WJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0236800 protein Q8H014 Q8H014_ORYSJ OJ1081D05.2 Os03g0236800 LOC_Os03g13360 OsJ_10066 OSNPB_030236800 ENOG411E7WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7WD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0620200 protein Q6K9G6 Q6K9G6_ORYSJ Os02g0620200 Os02g0620200 OJ1372_D06.22 OsJ_07559 OSNPB_020620200 ENOG411E7WG MXK3.4 Q9LV95 Q9LV95_ARATH Transmembrane protein 15887 Transmembrane protein integral component of membrane [GO:0016021] locus:2177654; AT5G64820 NA NA NA NA NA NA NA NA ENOG411E7WF Q1ECN0 Q1ECN0_ARATH At2g27330 (RNA-binding (RRM/RBD/RNP motifs) family protein) 12911 At2g27330 (RNA-binding (RRM/RBD/RNP motifs) family protein) RNA binding [GO:0003723] locus:2039590; AT2G27330 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E7WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Haemolysin-III related NA NA NA NA NA NA NA ENOG411E7WC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0662300 protein (cDNA clone:J033082C10, full insert sequence) Q0DYX1 Q0DYX1_ORYSJ Os02g0662300 Os02g0662300 OsJ_07830 OSNPB_020662300 ENOG411E7WB MDF20.6 Q8LC55 Q8LC55_ARATH At5g55620 11969 At5g55620 cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732] locus:2162147; AT5G55620 NA NA NA NA NA NA NA NA ENOG411E7W8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7W5 Q8LGG7 Q8LGG7_ARATH At1g68585 (Uncharacterized protein At1g68585) 12875 At1g68585 (Uncharacterized protein At1g68585) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:505006208; AT1G68585 NA NA NA NA NA NA NA NA ENOG411E7W7 Q9LMA2 Q9LMA2_ARATH T29M8.11 (Transmembrane protein) (Uncharacterized protein At1g19240) 11379 T29M8.11 (Transmembrane protein) (Uncharacterized protein At1g19240) integral component of membrane [GO:0016021] locus:2202145; AT1G19240 NA NA NA NA NA NA NA NA ENOG411E7W6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411E7W1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os06g0720000 protein (Fragment),Os02g0249500 protein (Fragment),Os06g0720000 protein,Os08g0256300 protein (Fragment),Os02g0446100 protein (Fragment),Os12g0186600 protein (Fragment),Os08g0519050 protein A0A0P0X0Z8,A0A0P0VH21,A0A0P0X123,A0A0P0XDJ6,A0A0P0VIN2,A0A0P0Y7N0,A0A0P0XI80 A0A0P0X0Z8_ORYSJ,A0A0P0VH21_ORYSJ,A0A0P0X123_ORYSJ,A0A0P0XDJ6_ORYSJ,A0A0P0VIN2_ORYSJ,A0A0P0Y7N0_ORYSJ,A0A0P0XI80_ORYSJ Os06g0720000 OSNPB_060720000,Os02g0249500 OSNPB_020249500,Os08g0256300 OSNPB_080256300,Os02g0446100 OSNPB_020446100,Os12g0186600 OSNPB_120186600,Os08g0519050 OSNPB_080519050 ENOG411E7W0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7W3 Q3E7K1 Q3E7K1_ARATH At3g51325 (RING/U-box superfamily protein) 10503 At3g51325 (RING/U-box superfamily protein) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:1006230202; AT3G51325 Zinc finger C3HC4 type (RING finger) Os10g0438800 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:001-112-F02, full insert sequence),Expressed protein (Os10g0438700 protein) (cDNA clone:002-113-H02, full insert sequence) Q7XE36,Q337U5 Q7XE36_ORYSJ,Q337U5_ORYSJ LOC_Os10g30310 Os10g0438800 OsJ_31654 OSNPB_100438800,LOC_Os10g30300 Os10g0438700 OsJ_31653 OSNPB_100438700 ENOG411E7W2 LSU3,LSU2,LSU1 Q9SCK2,Q9FIR9,Q9SCK1,A0A1I9LTU7 LSU3_ARATH,LSU2_ARATH,LSU1_ARATH,A0A1I9LTU7_ARATH Protein RESPONSE TO LOW SULFUR 3,Protein RESPONSE TO LOW SULFUR 2 (Protein ENHANCED DE-ETIOLATION 6),Protein RESPONSE TO LOW SULFUR 1,Response to low sulfur 1 DISRUPTION PHENOTYPE: Enhanced tolerance to osmotic stress (PubMed:23517122). Increased susceptibility to pathogens such as P.syringae and H.arabidopsidis (PubMed:21798943). {ECO:0000269|PubMed:21798943, ECO:0000269|PubMed:23517122}. FUNCTION: May be involved in defense responses monitoring (PubMed:21798943). Probably implicated into osmotic stress signaling (PubMed:23517122). {ECO:0000269|PubMed:21798943, ECO:0000269|PubMed:23517122}. 11178,10679,10781,9227 Protein RESPONSE TO LOW SULFUR 3,Protein RESPONSE TO LOW SULFUR 2 (Protein ENHANCED DE-ETIOLATION 6),Protein RESPONSE TO LOW SULFUR 1,Response to low sulfur 1 cellular response to sulfur starvation [GO:0010438]; chloroplast organization [GO:0009658]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of defense response [GO:0031347]; regulation of response to osmotic stress [GO:0047484]; response to salt stress [GO:0009651],cellular response to sulfur starvation [GO:0010438]; response to salt stress [GO:0009651] locus:2114738;,locus:2176811;,locus:2114618; AT3G49570,AT5G24660,AT3G49580 response to low sulfur NA NA NA NA NA NA NA ENOG411DS5M A0A1I9LRZ2,F4JDN8,F4IXL0 A0A1I9LRZ2_ARATH,F4JDN8_ARATH,F4IXL0_ARATH Protein kinase superfamily protein 35378,41779,30490 Protein kinase superfamily protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2090797;,locus:2089458; AT3G26700,AT3G21450 kinase family Os01g0929200 protein (Putative disease resistance protein kinase) (cDNA, clone: J075188E15, full insert sequence),Os05g0371600 protein,Os01g0935800 protein (Fragment) Q8RYK7,B9FP84,A0A0P0VCW0 Q8RYK7_ORYSJ,B9FP84_ORYSJ,A0A0P0VCW0_ORYSJ Os01g0929200 OsJ_04637 OSJNBa0052O12.20 OSNPB_010929200,Os05g0371600 OsJ_18302 OSNPB_050371600,Os01g0935800 OSNPB_010935800 ENOG411DS5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os05g0228400 protein Q75IG3,A0A0N7KKD4 Q75IG3_ORYSJ,A0A0N7KKD4_ORYSJ Os05g0228400 Os05g0228400 OSNPB_050228400 P0499F10.3,Os05g0228400 OSNPB_050228400 ENOG411DS51 SCC3 O82265 SCC3_ARATH Sister-chromatid cohesion protein 3 (AtSCC3) (Stromalin protein) DISRUPTION PHENOTYPE: The null allele scc3-2 is embryo lethal. The weak allele scc3-1 exhibits mitotic and meiotic defects. Heterzygote plants are dwarf and partly sterile. Reduced chromatid alignment during interphase. {ECO:0000269|PubMed:16176934, ECO:0000269|PubMed:19533160}. No homozygous mutant plants recovered; Heterozygotes: Reduced sister chromatid alignment-I. Schubert-2009 FUNCTION: Essential component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Required for centromere cohesion maintenance at anaphase I and for the monopolar orientation of the kinetochores during both male and female meiosis. Also involved in mitosis. {ECO:0000269|PubMed:16176934, ECO:0000269|PubMed:19533160}. R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; 125759 Sister-chromatid cohesion protein 3 (AtSCC3) (Stromalin protein) chromosome [GO:0005694]; nucleus [GO:0005634]; attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation [GO:0051455]; cell division [GO:0051301]; meiotic sister chromatid cohesion, centromeric [GO:0051754] DEVELOPMENTAL STAGE: Expressed in mitotic and meitotic cells. In meiotic nuclei, first detected at interphase, and binds to the chromosome axis from early leptotene through to anaphase I. {ECO:0000269|PubMed:16176934}. TISSUE SPECIFICITY: Expressed in roots, mature leaves, buds and seedlings. {ECO:0000269|PubMed:16176934}. locus:2043318; AT2G47980 cohesin subunit Os05g0188500 protein (Putative sister-chromatid cohesion protein) (cDNA clone:J023008B14, full insert sequence),Os05g0188500 protein (Fragment) Q60D95,A0A0P0WIY7 Q60D95_ORYSJ,A0A0P0WIY7_ORYSJ Os05g0188500 B1007D10.7 OSNPB_050188500,Os05g0188500 OSNPB_050188500 ENOG411DS55 O81299,F4JKY6 O81299_ARATH,F4JKY6_ARATH AT4g02340 protein (Alpha/beta-Hydrolases superfamily protein) (At4g02340/T14P8_15) (T14P8.15),Alpha/beta-Hydrolases superfamily protein ARA:AT4G02340-MONOMER; R-ATH-2142670; 36657,43060 AT4g02340 protein (Alpha/beta-Hydrolases superfamily protein) (At4g02340/T14P8_15) (T14P8.15),Alpha/beta-Hydrolases superfamily protein peroxisome [GO:0005777]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2133234;,locus:2129835; AT4G02340,AT4G15960 epoxide hydrolase Os05g0273800 protein (cDNA clone:001-022-G09, full insert sequence) Q0DJJ0 Q0DJJ0_ORYSJ Os05g0273800 Os05g0273800 OsJ_17872 OSNPB_050273800 ENOG411DS57 T5P19_220 Q9LXY3,A0A1I9LQY7 Q9LXY3_ARATH,A0A1I9LQY7_ARATH SET domain-containing protein (Uncharacterized protein T5P19_220),SET domain-containing protein 59452,59539 SET domain-containing protein (Uncharacterized protein T5P19_220),SET domain-containing protein protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026] locus:2102549; AT3G56570 SET domain-containing protein Os01g0879500 protein (SET domain-containing protein-like) (cDNA, clone: J100026F15, full insert sequence) Q8L4K4 Q8L4K4_ORYSJ Os01g0879500 OsJ_04288 OSNPB_010879500 P0018C10.28 P0471B04.39 ENOG411E42B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif CONSTANS-like protein (Os08g0249000 protein) Q6YW25 Q6YW25_ORYSJ Os08g0249000 OSJNBa0012K14.8 OSJNBb0003H03.30 OSNPB_080249000 ENOG411E50Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA non-specific lipid-transfer NA NA NA NA NA NA NA ENOG411E50Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0661500 protein (cDNA clone:J013001E16, full insert sequence) Q651U6 Q651U6_ORYSJ Os06g0661500 Os06g0661500 OsJ_22245 OSJNBa0051O02.35 OSJNBb0065C04.2 OSNPB_060661500 ENOG411EEXB P59833,Q8GUL8,Q84VZ5 UGPI3_ARATH,UGPI1_ARATH,UGPI2_ARATH Uncharacterized GPI-anchored protein At5g19250,Uncharacterized GPI-anchored protein At5g19230,Uncharacterized GPI-anchored protein At5g19240 21027,20511,21335 Uncharacterized GPI-anchored protein At5g19250,Uncharacterized GPI-anchored protein At5g19230,Uncharacterized GPI-anchored protein At5g19240 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2182162;,locus:2182142;,locus:2182152; AT5G19250,AT5G19230,AT5G19240 Inherit from euNOG: (GPI)-anchored protein NA NA NA NA NA NA NA ENOG411EEXC Q58FY6,Q29PT1 Q58FY6_ARATH,Q29PT1_ARATH Pollen Ole e 1 allergen and extensin family protein,At5g47635 (Pollen Ole e 1 allergen and extensin family protein) 19049,18421 Pollen Ole e 1 allergen and extensin family protein,At5g47635 (Pollen Ole e 1 allergen and extensin family protein) locus:504956032;,locus:505006679; AT2G40113,AT5G47635 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411EEXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EEXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EEXD COPT3 Q9FGU8 COPT3_ARATH Copper transporter 3 (AtCOPT3) FUNCTION: Involved in the transport of copper. {ECO:0000269|PubMed:12650623}. 16170 Copper transporter 3 (AtCOPT3) integral component of membrane [GO:0016021]; copper ion transmembrane transporter activity [GO:0005375] TISSUE SPECIFICITY: Highly expressed in stems and at lower levels in leaves and flowers. {ECO:0000269|PubMed:12650623}. locus:2153311; AT5G59040 copper ion transmembrane transporter high affinity copper ion transmembrane transporter NA NA NA NA NA NA NA ENOG411EEXE Q9LJX2 Q9LJX2_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 19542 Plant invertase/pectin methylesterase inhibitor superfamily protein enzyme inhibitor activity [GO:0004857]; pectinesterase inhibitor activity [GO:0046910] locus:2090369; AT3G12880 PMEI NA NA NA NA NA NA NA ENOG411EEXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain Os04g0360500 protein (Fragment) A0A0P0W932 A0A0P0W932_ORYSJ Os04g0360500 OSNPB_040360500 ENOG411EEXK Q5BPP4,Q8LFV1,A0A1P8B3V6,F4J494 Y3477_ARATH,Y4295_ARATH,A0A1P8B3V6_ARATH,F4J494_ARATH UPF0725 protein At3g44770,UPF0725 protein At4g29550,Uncharacterized protein,Transmembrane protein, putative (DUF626) 36476,41186,30186,58452 UPF0725 protein At3g44770,UPF0725 protein At4g29550,Uncharacterized protein,Transmembrane protein, putative (DUF626) integral component of membrane [GO:0016021] locus:2134383;,locus:2101615; AT3G44770,AT4G29550 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EEXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411EEXI ATHB-22 Q4PSR7 ATB22_ARATH Homeobox-leucine zipper protein ATHB-22 (HD-ZIP protein ATHB-22) (Homeodomain transcription factor ATHB-22) FUNCTION: Probable transcription factor. {ECO:0000250}. 21832 Homeobox-leucine zipper protein ATHB-22 (HD-ZIP protein ATHB-22) (Homeodomain transcription factor ATHB-22) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16055682}. locus:2040520; AT2G36610 Homeobox domain NA NA NA NA NA NA NA ENOG411EEXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EEXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0411250 protein A0A0N7KPU6 A0A0N7KPU6_ORYSJ Os08g0411250 OSNPB_080411250 ENOG411EEXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family NA NA NA NA NA NA NA ENOG411EEXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF98) NA NA NA NA NA NA NA ENOG411EEX2 A0A1P8AR54,F4I218 A0A1P8AR54_ARATH,F4I218_ARATH Remorin family protein 22434,17594 Remorin family protein locus:6530298166; AT1G63295 Remorin C-terminal region NA NA NA NA NA NA NA ENOG411EEX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os09g0563800 protein (cDNA clone:J013146L21, full insert sequence) Q650Y8 Q650Y8_ORYSJ Os09g0563800 OSJNBa0042B15.6 OSNPB_090563800 ENOG411EEX6 HIPP29 Q9LP41,A0A1P8AR59 HIP29_ARATH,A0A1P8AR59_ARATH Heavy metal-associated isoprenylated plant protein 29 (AtHIP29),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 16462,17122 Heavy metal-associated isoprenylated plant protein 29 (AtHIP29),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2029914; AT1G29100 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EEX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FES NA NA NA NA NA NA NA ENOG411EEX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox associated leucine zipper NA NA NA NA NA NA NA ENOG411EEX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0101400 protein,Os04g0453450 protein (Fragment),Os04g0452650 protein (Fragment),Os02g0573601 protein (Fragment),Os04g0454250 protein (Fragment),Os04g0453233 protein,Os01g0567533 protein,Os06g0141133 protein (Fragment) Q0DW21,A0A0P0WB51,A0A0P0WAT4,A0A0P0VKT2,A0A0P0WB39,A0A0P0WAW7,A0A0P0V4A3,A0A0P0WS60 Q0DW21_ORYSJ,A0A0P0WB51_ORYSJ,A0A0P0WAT4_ORYSJ,A0A0P0VKT2_ORYSJ,A0A0P0WB39_ORYSJ,A0A0P0WAW7_ORYSJ,A0A0P0V4A3_ORYSJ,A0A0P0WS60_ORYSJ Os03g0101400 Os03g0101400 OSNPB_030101400,Os04g0453450 OSNPB_040453450,Os04g0452650 OSNPB_040452650,Os02g0573601 OSNPB_020573601,Os04g0454250 OSNPB_040454250,Os04g0453233 OSNPB_040453233,Os01g0567533 OSNPB_010567533,Os06g0141133 OSNPB_060141133 ENOG411EEX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0232700 protein (cDNA, clone: J065174I21, full insert sequence),Os09g0562400 protein B7F8V0,A0A0P0XQK2 B7F8V0_ORYSJ,A0A0P0XQK2_ORYSJ Os06g0232700 OSNPB_060232700,Os09g0562400 OSNPB_090562400 ENOG411E308 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) Os05g0465400 protein (cDNA clone:J023052E24, full insert sequence) Q6I5J9 Q6I5J9_ORYSJ Os05g0465400 Os05g0465400 OJ1387_F08.2 OsJ_27742 OSJNBa0009E21.6 OSNPB_050465400 ENOG411E304 MNA5.13 Q0V802,A0A1P8BCU7 Q0V802_ARATH,A0A1P8BCU7_ARATH Alpha/beta-Hydrolases superfamily protein (At5g65400),Alpha/beta-Hydrolases superfamily protein 28164,30215 Alpha/beta-Hydrolases superfamily protein (At5g65400),Alpha/beta-Hydrolases superfamily protein peroxisome [GO:0005777]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2168230; AT5G65400 Serine hydrolase (FSH1) NA NA NA NA NA NA NA ENOG411E306 JAL19 Q9SSM3 JAL19_ARATH Jacalin-related lectin 19 19560 Jacalin-related lectin 19 carbohydrate binding [GO:0030246] locus:2032622; AT1G73040 Jacalin Os04g0330200 protein (Fragment),Os04g0200400 protein (Fragment),Os05g0541800 protein Q0JE45,A0A0P0W791,A0A0N7KL62 Q0JE45_ORYSJ,A0A0P0W791_ORYSJ,A0A0N7KL62_ORYSJ Os04g0330200 Os04g0330200 OSNPB_040330200,Os04g0200400 OSNPB_040200400,Os05g0541800 OSNPB_050541800 ENOG411E307 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E300 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-responsive protein Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31) P0C133 IAA31_ORYSJ IAA31 Os12g0601400 LOC_Os12g40900 OsJ_36766 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E301 RTNLB9 Q9LJQ5 RTNLI_ARATH Reticulon-like protein B9 (AtRTNLB9) 25880 Reticulon-like protein B9 (AtRTNLB9) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2089663; AT3G18260 Reticulon-like protein Reticulon-like protein,Reticulon-like protein (Fragment) B9FHM5,A0A0P0V6T9 B9FHM5_ORYSJ,A0A0P0V6T9_ORYSJ Os05g0550250 OsJ_19453 OSNPB_050550250,Os01g0691400 OSNPB_010691400 ENOG411E303 SMD3B,SMD3A Q9LM92,Q9S7E6 SMD3B_ARATH,SMD3A_ARATH Small nuclear ribonucleoprotein SmD3b (SmD3-b) (snRNP core protein D3-b),Small nuclear ribonucleoprotein SmD3a (SmD3-a) (snRNP core protein D3-a) DISRUPTION PHENOTYPE: Pleiotropic phenotypes of delayed flowering time and seed production, reduced root growth, partially defective leaf venation, abnormal numbers of trichome branches and changed numbers of floral organs. The double mutants smd3-a and smd3-b display embryonic lethality. {ECO:0000269|PubMed:21421416}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants smd3-a and smd3-b display embryonic lethality. {ECO:0000269|PubMed:21421416}. FUNCTION: Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a major role in the splicing of cellular pre-mRNAs. Required for normal plant development (PubMed:21421416). {ECO:0000250|UniProtKB:P62318, ECO:0000269|PubMed:21421416}.,FUNCTION: Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a minor role in the splicing of cellular pre-mRNAs (PubMed:21421416). {ECO:0000250|UniProtKB:P62318, ECO:0000269|PubMed:21421416}. R-ATH-72163;R-ATH-72165; 14238,13812 Small nuclear ribonucleoprotein SmD3b (SmD3-b) (snRNP core protein D3-b),Small nuclear ribonucleoprotein SmD3a (SmD3-a) (snRNP core protein D3-a) catalytic step 2 spliceosome [GO:0071013]; commitment complex [GO:0000243]; cytosol [GO:0005829]; nucleolus [GO:0005730]; pICln-Sm protein complex [GO:0034715]; precatalytic spliceosome [GO:0071011]; prespliceosome [GO:0071010]; SMN-Sm protein complex [GO:0034719]; spliceosomal tri-snRNP complex [GO:0097526]; U1 snRNP [GO:0005685]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U4 snRNP [GO:0005687]; U5 snRNP [GO:0005682]; RNA binding [GO:0003723]; developmental growth [GO:0048589]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal complex assembly [GO:0000245]; spliceosomal snRNP assembly [GO:0000387],catalytic step 2 spliceosome [GO:0071013]; commitment complex [GO:0000243]; cytosol [GO:0005829]; nuclear body [GO:0016604]; nucleolus [GO:0005730]; nucleus [GO:0005634]; pICln-Sm protein complex [GO:0034715]; precatalytic spliceosome [GO:0071011]; prespliceosome [GO:0071010]; SMN-Sm protein complex [GO:0034719]; spliceosomal tri-snRNP complex [GO:0097526]; U1 snRNP [GO:0005685]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U4 snRNP [GO:0005687]; U5 snRNP [GO:0005682]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal complex assembly [GO:0000245]; spliceosomal snRNP assembly [GO:0000387] TISSUE SPECIFICITY: Expressed in young seedlings, roots, leaves, flowers and immature siliques. {ECO:0000269|PubMed:21421416}. locus:2030442;,locus:2014589; AT1G20580,AT1G76300 Small nuclear ribonucleoprotein Os02g0102700 protein (Putative small nuclear ribonucleoprotein polypeptide D3) (cDNA clone:006-209-F11, full insert sequence) (cDNA clone:006-311-C12, full insert sequence) (cDNA clone:J033136G21, full insert sequence),Os03g0240800 protein (Small nuclear ribonucleoprotein Sm D3, putative, expressed) (cDNA clone:001-025-E05, full insert sequence) (cDNA clone:006-209-D01, full insert sequence) (cDNA clone:J033033E14, full insert sequence) Q6YU78,Q10PA9 Q6YU78_ORYSJ,Q10PA9_ORYSJ Os02g0102700 Os02g0102700 B1370C05.32 OJ1435_F07.22 OsJ_05002 OSNPB_020102700,LOC_Os03g13760 Os03g0240800 OSNPB_030240800 ENOG411E30M Q9SY40,A0A1P8B8Z0 Q9SY40_ARATH,A0A1P8B8Z0_ARATH Myosin heavy chain-like protein (Uncharacterized protein AT4g03620) (Uncharacterized protein T5L23.11),Myosin heavy chain-like protein 39005,35320 Myosin heavy chain-like protein (Uncharacterized protein AT4g03620) (Uncharacterized protein T5L23.11),Myosin heavy chain-like protein locus:2140705; AT4G03620 NA NA NA NA NA NA NA NA ENOG411E30N Q9SSR1 Y1259_ARATH DCC family protein At1g52590, chloroplastic 19709 DCC family protein At1g52590, chloroplastic plastoglobule [GO:0010287] locus:2035159; AT1G52590 DCC family protein At1g52590 Os01g0173000 protein (Fragment) A0A0P0UZC5 A0A0P0UZC5_ORYSJ Os01g0173000 OSNPB_010173000 ENOG411E30D SLD5 Q6NQP5,B3H4Z5 Q6NQP5_ARATH,B3H4Z5_ARATH DNA replication complex GINS protein SLD5 Embryo defective-D. Meinke-2009 FUNCTION: The GINS complex plays an essential role in the initiation of DNA replication. {ECO:0000256|PIRNR:PIRNR007764}. R-ATH-176974; 25465,21967 DNA replication complex GINS protein SLD5 GINS complex [GO:0000811]; replication fork protection complex [GO:0031298]; DNA duplex unwinding [GO:0032508]; DNA replication initiation [GO:0006270]; double-strand break repair via break-induced replication [GO:0000727],nucleus [GO:0005634]; DNA-dependent DNA replication [GO:0006261] locus:2154329; AT5G49010 DNA replication complex GINS protein DNA replication complex GINS protein SLD5 A0A0P0WHT3 A0A0P0WHT3_ORYSJ Os05g0143400 OSNPB_050143400 FUNCTION: The GINS complex plays an essential role in the initiation of DNA replication. {ECO:0000256|PIRNR:PIRNR007764}. ENOG411E30E F1P2.40 Q9SN88,A0A1I9LRA9,Q3EAN6,A0A1I9LRB0,F4JBJ9,A0A1I9LRA7 Q9SN88_ARATH,A0A1I9LRA9_ARATH,Q3EAN6_ARATH,A0A1I9LRB0_ARATH,F4JBJ9_ARATH,A0A1I9LRA7_ARATH At3g47490 (HNH endonuclease) (Uncharacterized protein F1P2.40),HNH endonuclease 26279,23701,19991,21342,24139,28637 At3g47490 (HNH endonuclease) (Uncharacterized protein F1P2.40),HNH endonuclease endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676],endonuclease activity [GO:0004519] locus:2079137; AT3G47490 HNH endonuclease HNH endonuclease domain-containing protein, putative, expressed (Os03g0169800 protein) (Putative endonuclease) (cDNA clone:J013136C11, full insert sequence) Q8S7W2 Q8S7W2_ORYSJ OSJNBa0091P11.7 LOC_Os03g07370 Os03g0169800 OSNPB_030169800 ENOG411E30G LBD12 Q8LBW3 LBD12_ARATH LOB domain-containing protein 12 (ASYMMETRIC LEAVES 2-like protein 5) (AS2-like protein 5) MISCELLANEOUS: Gain-of-function mutant pck1-D (T-DNA tagging) shows highly epinastic leaves, reduced apical dominance and sterility. 21529 LOB domain-containing protein 12 (ASYMMETRIC LEAVES 2-like protein 5) (AS2-like protein 5) DNA binding [GO:0003677]; leaf morphogenesis [GO:0009965]; shoot system morphogenesis [GO:0010016] TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. locus:2060842; AT2G30130 lob domain-containing protein LOB domain protein 12, putative, expressed (Os11g0106900 protein) (Os12g0106200 protein) (cDNA, clone: J065205C18, full insert sequence),Os05g0346800 protein (Fragment) Q2QYU3,A0A0P0WKY8 Q2QYU3_ORYSJ,A0A0P0WKY8_ORYSJ LOC_Os11g01550 LOC_Os12g01550 Os11g0106900 Os12g0106200 OsJ_34943 OSNPB_110106900 OSNPB_120106200,Os05g0346800 OSNPB_050346800 ENOG411E30A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family Os03g0663400 protein (Putative antifungal thaumatin-like protein) (cDNA clone:001-034-E02, full insert sequence) (cDNA clone:J033108D14, full insert sequence) (cDNA clone:J033115J22, full insert sequence) (p21 protein, putative, expressed) Q75GX3 Q75GX3_ORYSJ Os03g0663400 LOC_Os03g46060 Os03g0663400 OSJNBa0034D21.16 OSNPB_030663400 ENOG411E30Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0250501 protein A0A0P0X4A0 A0A0P0X4A0_ORYSJ Os07g0250501 OSNPB_070250501 ENOG411E30Z CYN O22683,A0A1I9LTP8 CYNS_ARATH,A0A1I9LTP8_ARATH Cyanate hydratase (Cyanase) (EC 4.2.1.104) (Cyanate hydrolase) (Cyanate lyase),Cyanase cyn-1 seedlings are more sensitive to cyanate stress than wild type seedlings based on root growth assays in the presence of KCNO.,cyn-7 seedlings are more sensitive to cyanate stress than wild type seedlings based on root growth assays in the presence of KCNO. FUNCTION: Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. {ECO:0000255|HAMAP-Rule:MF_03139}. ARA:AT3G23490-MONOMER;MetaCyc:AT3G23490-MONOMER; 4.2.1.104; 4.2.1.104 18592,15599 Cyanate hydratase (Cyanase) (EC 4.2.1.104) (Cyanate hydrolase) (Cyanate lyase),Cyanase cytosol [GO:0005829]; cyanate hydratase activity [GO:0008824]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; cyanate catabolic process [GO:0009440]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; cyanate hydratase activity [GO:0008824]; DNA binding [GO:0003677]; cyanate metabolic process [GO:0009439] locus:2088727; AT3G23490 Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide (By similarity) Cyanate hydratase (Cyanase) (EC 4.2.1.104) (Cyanate hydrolase) (Cyanate lyase) Q9FWK4 CYNS_ORYSJ CYN Os10g0471300 LOC_Os10g33270 OsJ_31860 OSJNBa0079L16.19 FUNCTION: Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. {ECO:0000255|HAMAP-Rule:MF_03139}. ENOG411E30U Q9LMP8,Q9SAI6,A0A1P8AM50 Q9LMP8_ARATH,Q9SAI6_ARATH,A0A1P8AM50_ARATH At1g15870/F7H2_19 (F7H2.20 protein) (Mitochondrial glycoprotein family protein),At1g80720 (F23A5.7) (Mitochondrial glycoprotein family protein),Mitochondrial glycoprotein family protein 28151,21902,27731 At1g15870/F7H2_19 (F7H2.20 protein) (Mitochondrial glycoprotein family protein),At1g80720 (F23A5.7) (Mitochondrial glycoprotein family protein),Mitochondrial glycoprotein family protein mitochondrial matrix [GO:0005759] locus:2036184;,locus:2025772; AT1G15870,AT1G80720 Mitochondrial glycoprotein family protein Os08g0439900 protein Q6Z9I3 Q6Z9I3_ORYSJ Os08g0439900 OsJ_27465 OSNPB_080439900 P0524F03.26 ENOG411E30V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0863300 protein Q0JHH7 Q0JHH7_ORYSJ Os01g0863300 Os01g0863300 OSNPB_010863300 ENOG411E30Q GSTU10,GSTU9 Q9CA57,Q9FUT0,A0A1P8B9C1 GSTUA_ARATH,GSTU9_ARATH,A0A1P8B9C1_ARATH Glutathione S-transferase U10 (AtGSTU10) (EC 2.5.1.18) (GST class-tau member 10),Glutathione S-transferase U9 (AtGSTU9) (EC 2.5.1.18) (GST class-tau member 9) (Glutathione S-transferase 14),Glutathione S-transferase tau 9 FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G74590-MONOMER;,ARA:AT5G62480-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 26805,27612,24544 Glutathione S-transferase U10 (AtGSTU10) (EC 2.5.1.18) (GST class-tau member 10),Glutathione S-transferase U9 (AtGSTU9) (EC 2.5.1.18) (GST class-tau member 9) (Glutathione S-transferase 14),Glutathione S-transferase tau 9 cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],transferase activity [GO:0016740] locus:2019095;,locus:2154129; AT1G74590,AT5G62480 glutathione s-transferase NA NA NA NA NA NA NA ENOG411EK05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UTP--glucose-1-phosphate uridylyltransferase NA NA NA NA NA NA NA ENOG411EK00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dedicator of cytokinesis NA NA NA NA NA NA NA ENOG411EK08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK09 Q9FJT1 FBD29_ARATH Putative FBD-associated F-box protein At5g56820 50523 Putative FBD-associated F-box protein At5g56820 locus:2165086; AT5G56820 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EK0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M1 NA NA NA NA NA NA NA ENOG411EK0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin carboxyl-terminal hydrolase NA NA NA NA NA NA NA ENOG411EK0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EK0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CONTAINS InterPro DOMAIN s Nucleic acid-binding OB-fold (InterPro IPR012340) Nucleic acid-binding OB-fold-like (InterPro IPR016027) NA NA NA NA NA NA NA ENOG411EK0H TIC40 Q9FMD5 TIC40_ARATH Protein TIC 40, chloroplastic (Protein PIGMENT DEFECTIVE EMBRYO 120) (Translocon at the inner envelope membrane of chloroplasts 40) (AtTIC40) DISRUPTION PHENOTYPE: Small and chlorotic, but not seedling lethal. Defective in chloroplast protein import. {ECO:0000269|PubMed:12805212, ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:17535810}. Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane. {ECO:0000269|PubMed:12805212, ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:15829604, ECO:0000269|PubMed:17158958, ECO:0000269|PubMed:17535810, ECO:0000269|PubMed:18657235}. MISCELLANEOUS: Inserts into the inner envelope membrane from the stroma after import from the cytoplasm. The transit peptide undergoes a two-step processing. The initial cleavage to generate the intermediate found in the stroma is mediated by the stromal processing peptidase (SPP) while the final processing step by a signal peptidase I-type (SPase I), possibly PLSP1, requires association with the inner membrane. 48903 Protein TIC 40, chloroplastic (Protein PIGMENT DEFECTIVE EMBRYO 120) (Translocon at the inner envelope membrane of chloroplasts 40) (AtTIC40) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; Tic complex [GO:0031897]; chloroplast organization [GO:0009658]; protein import into chloroplast stroma [GO:0045037] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:15659100}. TISSUE SPECIFICITY: Expressed in seedlings, flowers, leaves, stems and roots. {ECO:0000269|PubMed:15033972, ECO:0000269|PubMed:15659100}. locus:2174155; AT5G16620 Proteasome complex subunit Rpn13 ubiquitin receptor NA NA NA NA NA NA NA ENOG411EK0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRA NA NA NA NA NA NA NA ENOG411EK0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411EK0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain binding protein 11 NA NA NA NA NA NA NA ENOG411EK0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain binding protein 11 NA NA NA NA NA NA NA ENOG411EK0V Q8VZ94,F4I5C6,A0A1P8AP47,A0A1P8AP63,A0A1P8APA4 Q8VZ94_ARATH,F4I5C6_ARATH,A0A1P8AP47_ARATH,A0A1P8AP63_ARATH,A0A1P8APA4_ARATH At1g70180 (Sterile alpha motif (SAM) domain-containing protein) (Uncharacterized protein At1g70180; F20P5.10),Sterile alpha motif (SAM) domain-containing protein 50710,50347,48641,44838,47894 At1g70180 (Sterile alpha motif (SAM) domain-containing protein) (Uncharacterized protein At1g70180; F20P5.10),Sterile alpha motif (SAM) domain-containing protein locus:2020643; AT1G70180 Sterile alpha motif (SAM) domain-containing protein NA NA NA NA NA NA NA ENOG411EK0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM domain (Sterile alpha motif) OSJNBa0060P14.15 protein (OSJNBb0048E02.6 protein) (Os04g0465000 protein) (cDNA clone:J033089O08, full insert sequence),Os04g0465000 protein Q7X7Y6,A0A0P0WBH4 Q7X7Y6_ORYSJ,A0A0P0WBH4_ORYSJ Os04g0465000 OSJNBa0060P14.15 OSJNBb0048E02.6 OSNPB_040465000,Os04g0465000 OSNPB_040465000 ENOG411EK0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor-A C terminal domain NA NA NA NA NA NA NA ENOG411EK0R RFK1 Q9ASQ6,A0A1P8ANH9,A0A1P8AUP1,A0A1P8AUL5,A0A1P8AUL0,F4I337,F4I336 Y1972_ARATH,A0A1P8ANH9_ARATH,A0A1P8AUP1_ARATH,A0A1P8AUL5_ARATH,A0A1P8AUL0_ARATH,F4I337_ARATH,F4I336_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g29720 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase 2.7.11.1 112763,112065,105141,111287,101530,120053,107675 Probable LRR receptor-like serine/threonine-protein kinase At1g29720 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2019337;,locus:2019367;,locus:2019317; AT1G29720,AT1G29740,AT1G29730 Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411EK0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EK0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0610700 protein Q6K9C2 Q6K9C2_ORYSJ OJ1476_F05.21-1 Os02g0610700 OsJ_07487 OSNPB_020610700 ENOG411EK0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Golgi-body localisation protein domain NA NA NA NA NA NA NA ENOG411EK0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E50F O64764,Q93VQ9 TRXO1_ARATH,TRXO2_ARATH Thioredoxin O1, mitochondrial (AtTrxo1),Thioredoxin O2, mitochondrial (AtTrxo2) FUNCTION: Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity. Reduced by thioredoxin reductases NTRA and NTRB. {ECO:0000269|PubMed:11717467}. 21191,17623 Thioredoxin O1, mitochondrial (AtTrxo1),Thioredoxin O2, mitochondrial (AtTrxo2) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662],cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2044772;,locus:2015736; AT2G35010,AT1G31020 Thioredoxin Thioredoxin O, mitochondrial (OsTrxo1) (OsTrx22) Q655X0 TRXO_ORYSJ Os06g0665900 LOC_Os06g45510 OsJ_22283 P0473H04.30 P0637D03.1 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411E50G ATG12B,ATG12A,APG12B Q9LVK3,Q8S924,Q67YB5,A0A1I9LNQ3,A0A1I9LNQ2 AT12B_ARATH,AT12A_ARATH,Q67YB5_ARATH,A0A1I9LNQ3_ARATH,A0A1I9LNQ2_ARATH Ubiquitin-like protein ATG12B (Autophagy-related protein 12b) (APG12-like protein b) (AtAPG12b),Ubiquitin-like protein ATG12A (Autophagy-related protein 12a) (APG12-like protein a) (AtAPG12a),Ubiquitin-like superfamily protein (Uncharacterized protein At1g54210),Ubiquitin-like protein ATG12 FUNCTION: Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through a ubiquitin-like conjugating system involving also ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling. {ECO:0000269|PubMed:16040659}.,FUNCTION: Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. {ECO:0000256|RuleBase:RU361201}. R-ATH-1632852; 10358,10571,5559,7474,9550 Ubiquitin-like protein ATG12B (Autophagy-related protein 12b) (APG12-like protein b) (AtAPG12b),Ubiquitin-like protein ATG12A (Autophagy-related protein 12a) (APG12-like protein a) (AtAPG12a),Ubiquitin-like superfamily protein (Uncharacterized protein At1g54210),Ubiquitin-like protein ATG12 Atg12-Atg5-Atg16 complex [GO:0034274]; pre-autophagosomal structure membrane [GO:0034045]; Atg8 ligase activity [GO:0019776]; autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; C-terminal protein lipidation [GO:0006501]; nucleophagy [GO:0044804]; protein transport [GO:0015031],cytoplasm [GO:0005737]; autophagosome assembly [GO:0000045] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16040659}. locus:2088182;,locus:2020098; AT3G13970,AT1G54210 Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system Ubiquitin-like protein ATG12 (Autophagy-related protein 12) (APG12-like) Q69NP0 ATG12_ORYSJ ATG12 APG12 Os06g0205000 LOC_Os06g10340 J100018F14 OsJ_019683 OsJ_20516 OSJNBb0015B15.15 FUNCTION: Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through a ubiquitin-like conjugating system is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling (By similarity). {ECO:0000250}. ENOG411E6A3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial import receptor subunit NA NA NA NA NA NA NA ENOG411E6A7 RIC11,RIC9,RIC10 Q0WL69,Q1G3Y0,Q9M0Y9 RIC11_ARATH,RIC9_ARATH,RIC10_ARATH CRIB domain-containing protein RIC11 (ROP-interactive CRIB motif-containing protein 11) (Target of ROP protein RIC11),CRIB domain-containing protein RIC9 (ROP-interactive CRIB motif-containing protein 9) (Target of ROP protein RIC9),CRIB domain-containing protein RIC10 (ROP-interactive CRIB motif-containing protein 10) (Target of ROP protein RIC10) "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses (By similarity). {ECO:0000250}.,FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Is involved in pollen tube growth regulation through its interaction with ARAC11/ROP1. {ECO:0000269|PubMed:11752391}.,FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Is involved in pollen tube growth regulation. {ECO:0000269|PubMed:11752391}." MISCELLANEOUS: Over-expression of RIC9 in tobacco germinating pollen reduces pollen tube elongation. {ECO:0000305|PubMed:11752391}.,MISCELLANEOUS: Over-expression of RIC10 in tobacco germinating pollen increases pollen tube elongation. {ECO:0000305|PubMed:11752391}. 17316,14639,17019 CRIB domain-containing protein RIC11 (ROP-interactive CRIB motif-containing protein 11) (Target of ROP protein RIC11),CRIB domain-containing protein RIC9 (ROP-interactive CRIB motif-containing protein 9) (Target of ROP protein RIC9),CRIB domain-containing protein RIC10 (ROP-interactive CRIB motif-containing protein 10) (Target of ROP protein RIC10) plasma membrane [GO:0005886]; regulation of growth [GO:0040008],cytoplasm [GO:0005737]; pollen tube growth [GO:0009860]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, siliques and pollen. {ECO:0000269|PubMed:11752391}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and pollen. {ECO:0000269|PubMed:11752391}. locus:4010713898;,locus:4010713574;,locus:2135373; AT4G21745,AT1G61795,AT4G04900 P21-Rho-binding domain Os04g0627400 protein A0A0P0WF05 A0A0P0WF05_ORYSJ Os04g0627400 OSNPB_040627400 ENOG411E6A8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like NA NA NA NA NA NA NA ENOG411E50E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Thioredoxin H1 (OsTrxh1) (Phloem sap 13 kDa protein 1),Os12g0280050 protein Q0D840,A0A0P0Y945 TRXH1_ORYSJ,A0A0P0Y945_ORYSJ TRXH RPP13-1 Os07g0186000 LOC_Os07g08840 OJ1339_B08.1 OsJ_022432 P0506C07.2,Os12g0280050 OSNPB_120280050 FUNCTION: Thiol-disulfide oxidoreductase involved in the redox regulation of MAP kinases. Under reducing conditions, inhibits MPK1 and MPK5 kinase activities. Mediates its own transport from cell-to-cell through plasmodesmata. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:19665023, ECO:0000269|PubMed:7766047, ECO:0000269|PubMed:9599802}. ENOG411E6AJ Q9LVP2 Q9LVP2_ARATH At3g29170 (Transmembrane protein (DUF872)) (Uncharacterized protein At3g29170) 13758 At3g29170 (Transmembrane protein (DUF872)) (Uncharacterized protein At3g29170) integral component of membrane [GO:0016021] locus:2094677; AT3G29170 UPF0414 transmembrane protein Os12g0129000 protein,Os11g0132400 protein (Fragment) C7JA51,Q0IUV7 C7JA51_ORYSJ,Q0IUV7_ORYSJ Os12g0129000 Os12g0129000 OSNPB_120129000,Os11g0132400 OSNPB_110132400 ENOG411EAWC MJB24.8 Q8W4D1,Q9SVZ8 Q8W4D1_ARATH,Q9SVZ8_ARATH At5g57270 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At5g57270; MJB24.8),At4g25870 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein AT4g25870) 44971,45015 At5g57270 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At5g57270; MJB24.8),At4g25870 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein AT4g25870) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2165605;,locus:2117542; AT5G57270,AT4G25870 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411EE4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family UPF0052 NA NA NA NA NA NA NA ENOG411EE4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) NA NA NA NA NA NA NA ENOG411EE40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q5Z9X3 Q5Z9X3_ORYSJ Os06g0343600 Os06g0343600 OSNPB_060343600 P0459H02.26 ENOG411EE49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc Kinesin-like protein KIN-7G B9FS33 KN7G_ORYSJ KIN7G Os06g0206700 LOC_Os06g10480 OsJ_20526 ENOG411EB86 RABH1D Q9SID8 RAH1D_ARATH Ras-related protein RABH1d (AtRABH1d) FUNCTION: Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity). {ECO:0000250}. R-ATH-6798695;R-ATH-6811438;R-ATH-8854214; 23112 Ras-related protein RABH1d (AtRABH1d) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890] locus:2060415; AT2G22290 Signal recognition particle receptor beta subunit NA NA NA NA NA NA NA ENOG411E504 T1B9.13 Q9SFV0,Q8GS41 Q9SFV0_ARATH,Q8GS41_ARATH Putative RING zinc finger protein (RING/U-box superfamily protein),Putative RING zinc finger (RING/U-box superfamily protein) (Uncharacterized protein At5g48655) 20090,22305 Putative RING zinc finger protein (RING/U-box superfamily protein),Putative RING zinc finger (RING/U-box superfamily protein) (Uncharacterized protein At5g48655) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567],nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; response to chitin [GO:0010200] locus:2098505;,locus:505006682; AT3G07200,AT5G48655 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EJHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1110) Os01g0157100 protein Q5ZCD2 Q5ZCD2_ORYSJ Os01g0157100 OsJ_00442 OSNPB_010157100 P0011G08.35 ENOG411EJHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3673) NA NA NA NA NA NA NA ENOG411EJHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EJHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome C and Quinol oxidase polypeptide I NA NA NA NA NA NA NA ENOG411EJHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EJHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJHJ T6H20.110 Q9STF8 Q9STF8_ARATH Serine protease inhibitor potato inhibitor I-type family protein (Serine protease inhibitor, potato inhibitor I-type family protein) (Uncharacterized protein T6H20.110) 9573 Serine protease inhibitor potato inhibitor I-type family protein (Serine protease inhibitor, potato inhibitor I-type family protein) (Uncharacterized protein T6H20.110) peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response [GO:0006952]; response to wounding [GO:0009611] locus:2102822; AT3G46860 Potato inhibitor I family NA NA NA NA NA NA NA ENOG411EJH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E12G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os04g0453266 protein,Os04g0453300 protein A0A0N7KJ56,A0A0P0WB92 A0A0N7KJ56_ORYSJ,A0A0P0WB92_ORYSJ Os04g0453266 OSNPB_040453266,Os04g0453300 OSNPB_040453300 ENOG411E12N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os05g0522600 protein,Os05g0522600 protein (Fragment) Q5W675,A0A0P0WPX9 Q5W675_ORYSJ,A0A0P0WPX9_ORYSJ Os05g0522600 OJ1087_C03.13 OSJNBa0075A10.6 OSNPB_050522600,Os05g0522600 OSNPB_050522600 ENOG411EB8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA f-box family NA NA NA NA NA NA NA ENOG411E6DM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6DN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BowB Os01g0123900 protein (cDNA clone:001-025-D04, full insert sequence) (cDNA clone:006-203-G05, full insert sequence) (cDNA clone:J023053A08, full insert sequence),Os01g0124600 protein Q0JR29,B9EZA4 Q0JR29_ORYSJ,B9EZA4_ORYSJ Os01g0123900 Os01g0123900 OSNPB_010123900,Os01g0124600 OsJ_00201 OSNPB_010124600 ENOG411E6DI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protease inhibitor seed storage lipid transfer protein (LTP) family protein Os06g0711900 protein (cDNA clone:001-203-F04, full insert sequence) Q0D9K5 Q0D9K5_ORYSJ Os06g0711900 Os06g0711900 OSNPB_060711900 ENOG411E6DK ERD15 Q39096 ERD15_ARATH Protein EARLY RESPONSIVE TO DEHYDRATION 15 (PAM2-containing protein CID1) (Polyadenylate-binding protein-interacting protein 1) (PABP-interacting protein 1) (Poly(A)-binding protein-interacting protein 1) (Protein CTC-INTERACTING DOMAIN 1) (Protein LIGHT STRESS-REGULATED 1) DISRUPTION PHENOTYPE: Hypersensitive to abscisic acid (ABA) leading to improved tolerance to both drought and freezing, as well as impaired seed germination in the presence of ABA. {ECO:0000269|PubMed:17056758}. FUNCTION: Central component of stress responses that interacts with poly(A)-binding proteins. Negative regulator of abscisic acid (ABA) responses, including resistance to drought and freezing as well as stomatal closure regulation. Mediates resistance to the bacterial necrotroph pathogen Erwinia carotovora subsp. carotovora and promotes the induction of marker genes for systemic acquired resistance (SAR). {ECO:0000269|PubMed:17056758}. 18411 Protein EARLY RESPONSIVE TO DEHYDRATION 15 (PAM2-containing protein CID1) (Polyadenylate-binding protein-interacting protein 1) (PABP-interacting protein 1) (Poly(A)-binding protein-interacting protein 1) (Protein CTC-INTERACTING DOMAIN 1) (Protein LIGHT STRESS-REGULATED 1) cytoplasm [GO:0005737]; response to bacterium [GO:0009617]; response to high light intensity [GO:0009644]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in cauline leaves, stems, rosette leaves, immature siliques and primary inflorescences. {ECO:0000269|PubMed:15650869}. locus:2060529; AT2G41430 polyadenylate-binding protein-interacting protein 17.7 kDa low temperature induced protein (Expressed protein) (Os03g0353400 protein) (cDNA clone:001-046-D01, full insert sequence),ERD15 (Expressed protein) (Os03g0353400 protein) (cDNA clone:J013158E09, full insert sequence),Os07g0661400 protein (cDNA clone:001-205-F04, full insert sequence) (cDNA clone:002-125-B04, full insert sequence) (cDNA clone:J013160F04, full insert sequence) Q7XXS2,Q10LE3,Q7EZY8 Q7XXS2_ORYSJ,Q10LE3_ORYSJ,Q7EZY8_ORYSJ Os03g0353400 LOC_Os03g23010 OsJ_10861 OSNPB_030353400,Os03g0353400 LOC_Os03g23010 OSNPB_030353400,P0496C02.128 P0453E03.101 Os07g0661400 OSNPB_070661400 ENOG411E6DJ Q8GXD8,Q5XV87,O48801 Q8GXD8_ARATH,Q5XV87_ARATH,O48801_ARATH RING/U-box superfamily protein (Uncharacterized protein At4g22250) (Uncharacterized protein At4g22250/T10I14_80),RING/U-box superfamily protein,F2401.10 (RING/U-box superfamily protein) 24060,23200,22914 RING/U-box superfamily protein (Uncharacterized protein At4g22250) (Uncharacterized protein At4g22250/T10I14_80),RING/U-box superfamily protein,F2401.10 (RING/U-box superfamily protein) locus:2132016;,locus:504955313;,locus:2027094; AT4G22250,AT4G03965,AT1G62370 RING NA NA NA NA NA NA NA ENOG411E6DE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0441300 protein,Os05g0154300 protein,Os03g0695300 protein A0A0P0XUL8,A0A0P0WI35,A0A0P0W1Q4 A0A0P0XUL8_ORYSJ,A0A0P0WI35_ORYSJ,A0A0P0W1Q4_ORYSJ Os10g0441300 OSNPB_100441300,Os05g0154300 OSNPB_050154300,Os03g0695300 OSNPB_030695300 ENOG411E6DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E6DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein (DUF2358) NA NA NA NA NA NA NA ENOG411E6DF A0A1P8AUM7,A0A1P8AUQ9,F4HQJ2 A0A1P8AUM7_ARATH,A0A1P8AUQ9_ARATH,F4HQJ2_ARATH Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein 35019,33229,39220 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein DNA binding [GO:0003677]; metal ion binding [GO:0046872],nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; metal ion binding [GO:0046872]; telomeric loop formation [GO:0031627] locus:2035372; AT1G01150 NA NA NA NA NA NA NA NA ENOG411E6DA AZF1 Q9SSW1 AZF1_ARATH Zinc finger protein AZF1 (Zinc finger protein OZAKGYO) (Zinc-finger protein 1) FUNCTION: Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. MISCELLANEOUS: Plants overexpressing AZF1 have increased sensitivity to salt stress and barely survive under high salt conditons. {ECO:0000305|PubMed:21852415}. 26471 Zinc finger protein AZF1 (Zinc finger protein OZAKGYO) (Zinc-finger protein 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; hyperosmotic salinity response [GO:0042538]; negative regulation of transcription, DNA-templated [GO:0045892]; response to chitin [GO:0010200]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. locus:2158192; AT5G67450 DNA binding nucleic acid binding transcription factor transcription repressor zinc ion binding NA NA NA NA NA NA NA ENOG411E6DC F16N3.27 Q9SX76 Q9SX76_ARATH At1g47410 (F16N3.27 protein) 21762 At1g47410 (F16N3.27 protein) locus:2015438; AT1G47410 NA NA NA NA NA NA NA NA ENOG411E6DB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein Os07g0592000 protein (cDNA clone:002-128-B02, full insert sequence) Q0D500 Q0D500_ORYSJ Os07g0592000 Os07g0592000 OSNPB_070592000 ENOG411E6DY Q9SKP5 Q9SKP5_ARATH At2g21180/F26H11.6 (Expressed protein) (Transmembrane protein) 14384 At2g21180/F26H11.6 (Expressed protein) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2047062; AT2G21180 NA Expressed protein (Os03g0249700 protein) (Os03g0249800 protein) (cDNA clone:J013107I18, full insert sequence) (cDNA clone:J023090G01, full insert sequence) Q10P23 Q10P23_ORYSJ Os03g0249700 LOC_Os03g14570 Os03g0249800 OsJ_10149 OSNPB_030249700 ENOG411E6DX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits (By similarity) NA NA NA NA NA NA NA ENOG411E6DZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0714600 protein (cDNA clone:006-206-H11, full insert sequence) Q5JLT2 Q5JLT2_ORYSJ Os01g0714600 Os01g0714600 B1131B07.7 OSNPB_010714600 ENOG411E6DU F4JCI2 F4JCI2_ARATH Ribosomal protein S21 family protein 11648 Ribosomal protein S21 family protein ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2079271; AT3G26360 Ribosomal protein S21 Expressed protein (Os03g0694700 protein) (cDNA clone:002-155-H01, full insert sequence) Q10ET5 Q10ET5_ORYSJ LOC_Os03g48830 Os03g0694700 OSNPB_030694700 ENOG411E6DT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os04g0174500 protein,Os07g0474850 protein,Os06g0229700 protein A3ARL5,A0A0P0X5R4,A0A0P0WUY5 A3ARL5_ORYSJ,A0A0P0X5R4_ORYSJ,A0A0P0WUY5_ORYSJ Os04g0174500 OsJ_14008 OSNPB_040174500,Os07g0474850 OSNPB_070474850,Os06g0229700 OSNPB_060229700 ENOG411E6DW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6DV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6DQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein NA NA NA NA NA NA NA ENOG411E6DP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6DS Q147K0,A0A1P8B879,F4JSK0 Q147K0_ARATH,A0A1P8B879_ARATH,F4JSK0_ARATH At4g25315 (Expressed protein),Expressed protein 14910,11434,12774 At4g25315 (Expressed protein),Expressed protein locus:1006230319; AT4G25315 Protein of unknown function (DUF3128) Os09g0516800 protein,Os11g0696125 protein Q69MT8,A0A0P0Y684 Q69MT8_ORYSJ,A0A0P0Y684_ORYSJ Os09g0516800 Os09g0516800 OSJNBb0034B12.19 OSNPB_090516800,Os11g0696125 OSNPB_110696125 ENOG411E6DR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA finger protein Os10g0540000 protein (Fragment) Q0IW18 Q0IW18_ORYSJ Os10g0540000 OSNPB_100540000 ENOG411E6D9 Q8W1E8 Q8W1E8_ARATH At2g17710/T17A5.17 (Big1) (Uncharacterized protein At2g17710) 17655 At2g17710/T17A5.17 (Big1) (Uncharacterized protein At2g17710) locus:2827886; AT2G17710 NA NA NA NA NA NA NA NA ENOG411E6D8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: leucine rich repeat NA NA NA NA NA NA NA ENOG411E6D5 RPS31 O80439 RR31_ARATH 30S ribosomal protein S31, chloroplastic (Plastid-specific 30S ribosomal protein 4) (PSRP-4) 12783 30S ribosomal protein S31, chloroplastic (Plastid-specific 30S ribosomal protein 4) (PSRP-4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ribosome [GO:0005840]; plastid translation [GO:0032544] locus:2042882; AT2G38140 ribosomal protein Os05g0186000 protein (cDNA clone:001-018-H07, full insert sequence),Os05g0186000 protein (cDNA clone:006-211-A09, full insert sequence) B7E324,Q60EZ7 B7E324_ORYSJ,Q60EZ7_ORYSJ Os05g0186000 OSNPB_050186000,OJ1111_A10.15 Os05g0186000 OsJ_17380 OSNPB_050186000 ENOG411E6D4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein WI12 Os07g0691300 protein Q7XI66 Q7XI66_ORYSJ P0034A04.103 P0597G07.133 Os07g0691300 OsJ_25673 OSNPB_070691300 ENOG411E6D6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Serine-rich Os02g0799700 protein (cDNA clone:J013002J20, full insert sequence) Q69IK9 Q69IK9_ORYSJ Os02g0799700 OJ1695_D07.25 OSJNBa0032L17.1 OSNPB_020799700 ENOG411E6D1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0201300 protein (Fragment) Q0E300 Q0E300_ORYSJ Os02g0201300 Os02g0201300 OSNPB_020201300 ENOG411E6D0 A8MRX3,Q1G3Z3 A8MRX3_ARATH,Q1G3Z3_ARATH Uncharacterized protein 9210,10512 Uncharacterized protein small ribosomal subunit [GO:0015935]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:4010713530; AT1G47278 NA Expressed protein (Os03g0276700 protein) (cDNA clone:001-122-F12, full insert sequence),Os08g0422300 protein Q10NA6,Q7EYS1 Q10NA6_ORYSJ,Q7EYS1_ORYSJ Os03g0276700 LOC_Os03g16874 Os03g0276700 OsJ_10331 OSNPB_030276700,Os08g0422300 Os08g0422300 OsJ_27356 OSJNBa0077M12.121 OSNPB_080422300 ENOG411E6D3 BHLH53,BHLH52 Q84RD0,Q9SA82 BH053_ARATH,BH052_ARATH Transcription factor bHLH53 (Basic helix-loop-helix protein 53) (AtbHLH53) (bHLH 53) (Transcription factor EN 123) (bHLH transcription factor bHLH053),Transcription factor bHLH52 (Basic helix-loop-helix protein 52) (AtbHLH52) (bHLH 52) (Transcription factor EN 124) (bHLH transcription factor bHLH052) 33570,30444 Transcription factor bHLH53 (Basic helix-loop-helix protein 53) (AtbHLH53) (bHLH 53) (Transcription factor EN 123) (bHLH transcription factor bHLH053),Transcription factor bHLH52 (Basic helix-loop-helix protein 52) (AtbHLH52) (bHLH 52) (Transcription factor EN 124) (bHLH transcription factor bHLH052) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2044762;,locus:2204569; AT2G34820,AT1G30670 sequence-specific DNA binding transcription factor activity NA NA NA NA NA NA NA ENOG411E6D2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein OSJNBa0010H02.4 protein (Os04g0551600 protein) (cDNA clone:002-114-A09, full insert sequence),Os02g0658200 protein (cDNA clone:J023054K18, full insert sequence) Q7XT41,Q0DYZ1 Q7XT41_ORYSJ,Q0DYZ1_ORYSJ Os04g0551600 Os04g0551600 OsJ_15702 OSJNBa0010H02.4 OSNPB_040551600,Os02g0658200 Os02g0658200 OSNPB_020658200 ENOG411EBQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosome inactivating protein NA NA NA NA NA NA NA ENOG411EA68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os10g0351200 protein (Os10g0351300 protein) (Putative Cytochrome P450),Os10g0186300 protein (Putative geraniol 10-hydroxylase),Os12g0196700 protein,Os10g0144700 protein Q8RU53,Q8LML7,A0A0P0Y7X8,A0A0P0XRF4 Q8RU53_ORYSJ,Q8LML7_ORYSJ,A0A0P0Y7X8_ORYSJ,A0A0P0XRF4_ORYSJ Os10g0351200 Os10g0351300 OSJNBb0023M11.14 OSNPB_100351200,OSJNBb0086I08.14 Os10g0186300 OSNPB_100186300,Os12g0196700 OSNPB_120196700,Os10g0144700 OSNPB_100144700 ENOG411EA69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thiolase N-terminal domain NA NA NA NA NA NA NA ENOG411EA60 SINE2 Q9SQR5 SINE2_ARATH Protein SINE2 DISRUPTION PHENOTYPE: No visible phenotype. More susceptible to the oomycete pathogen H.arabidopsidis (Hpa) infection. {ECO:0000269|PubMed:24891605}. FUNCTION: Plays a role in innate immunity against the oomycete pathogen A.arabidopsidis (Hpa). {ECO:0000269|PubMed:24891605}. 61442 Protein SINE2 integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; antifungal innate immune response [GO:0061760] TISSUE SPECIFICITY: Expressed in epidermal cells, mesophyll cells, trichomes and root cells. {ECO:0000269|PubMed:24891605}. locus:2095963; AT3G03970 NA NA NA NA NA NA NA NA ENOG411EA61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411EA62 CALS12 Q9ZT82 CALSC_ARATH Callose synthase 12 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 5) (Protein POWDERY MILDEW RESISTANT 4) DISRUPTION PHENOTYPE: Plants develop smaller leaves, and collapsed and inviable pollen grains. They are resistant to the biotrophic pathogens Erysiphe cichoracearum (powdery mildew), E.orontii and Hyaloperonospora parasitica. {ECO:0000269|PubMed:16021399}. Phenotype not described. Altered response to wounding; Resistant to powdery mildew-G. Fincher-2003 FUNCTION: Involved in sporophytic and gametophytic development. Required for normal leaf development. During pollen formation, required for the formation of the callose wall separating the tetraspores of the tetrad (interstitial wall), but not for the callose wall surrounding the pollen mother cells (peripheral wall). Functionally redudant to CALS11 (GSL1). May play a role later in pollen grain maturation. Required for callose formation induced by wounding and pathogen attack. May interfere with salicylic acid-induced signaling pathway during defense response. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals. {ECO:0000269|PubMed:12081364, ECO:0000269|PubMed:12920300, ECO:0000269|PubMed:14555698, ECO:0000269|PubMed:16021399}. ARA:AT4G03550-MONOMER; 2.4.1.34 206912 Callose synthase 12 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 5) (Protein POWDERY MILDEW RESISTANT 4) 1,3-beta-D-glucan synthase complex [GO:0000148]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; defense response [GO:0006952]; defense response by callose deposition [GO:0052542]; defense response by callose deposition in cell wall [GO:0052544]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; leaf morphogenesis [GO:0009965]; leaf senescence [GO:0010150]; pollen development [GO:0009555]; regulation of cell shape [GO:0008360]; reproduction [GO:0000003]; response to fungus [GO:0009620]; salicylic acid mediated signaling pathway [GO:0009863] TISSUE SPECIFICITY: Hihgly expressed in flowers. Expressed at low levels in roots, leaves, stems, cauline leaves and siliques. {ECO:0000269|PubMed:12081364, ECO:0000269|PubMed:16021399}. locus:2128786; AT4G03550 13-beta-glucan synthase component Os01g0672500 protein (Fragment),Os01g0754200 protein (Fragment) Q0JKI5,A0A0P0V8B6 Q0JKI5_ORYSJ,A0A0P0V8B6_ORYSJ Os01g0672500 Os01g0672500 OSNPB_010672500,Os01g0754200 OSNPB_010754200 ENOG411EA63 P0C8L4 Y4648_ARATH Uncharacterized protein At4g26485 23846 Uncharacterized protein At4g26485 cytoplasm [GO:0005737]; rRNA (uridine-N3-)-methyltransferase activity [GO:0070042]; rRNA base methylation [GO:0070475] AT4G26485 Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411EA64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinacetylesterase NA NA NA NA NA NA NA ENOG411EA65 Q9C8K0,Q9FG90,Q9LMP6,Q9FG91,A0A1P8AVK4 DRL5_ARATH,DRL33_ARATH,DRL3_ARATH,DRL32_ARATH,A0A1P8AVK4_ARATH Probable disease resistance protein At1g51480,Probable disease resistance protein At5g43740,Probable disease resistance protein At1g15890,Probable disease resistance protein At5g43730,Disease resistance protein (CC-NBS-LRR class) family FUNCTION: Probable disease resistance protein. {ECO:0000250}. 97307,98473,95845,96266,77888 Probable disease resistance protein At1g51480,Probable disease resistance protein At5g43740,Probable disease resistance protein At1g15890,Probable disease resistance protein At5g43730,Disease resistance protein (CC-NBS-LRR class) family plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952] locus:2170902;,locus:2036214;,locus:2170892; AT1G51480,AT5G43740,AT1G15890,AT5G43730 disease resistance protein (CC-NBS-LRR class) NA NA NA NA NA NA NA ENOG411EA66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EA67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA polymerase NA NA NA NA NA NA NA ENOG411EA6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0227700 protein (Putative LRR receptor-like kinase) (cDNA, clone: J100074L11, full insert sequence),Os02g0227900 protein Q6H5Y7,A0A0N7KEZ0 Q6H5Y7_ORYSJ,A0A0N7KEZ0_ORYSJ Os02g0227700 OsJ_05962 OSNPB_020227700 P0620H05.13,Os02g0227900 OSNPB_020227900 ENOG411EA6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0156800 protein (Os02g0157400 protein) (Fragment) A0A0P0VEV5 A0A0P0VEV5_ORYSJ Os02g0156800 Os02g0157400 OSNPB_020156800 OSNPB_020157400 ENOG411EA6Z PBL18 Q5XF79,A0A1P8AWT9 PBL18_ARATH,A0A1P8AWT9_ARATH Probable serine/threonine-protein kinase PBL18 (EC 2.7.11.1) (PBS1-like protein 18),Protein kinase superfamily protein FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 42696,41585 Probable serine/threonine-protein kinase PBL18 (EC 2.7.11.1) (PBS1-like protein 18),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2205050; AT1G69790 STYKc NA NA NA NA NA NA NA ENOG411EA6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411EA6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os02g0142100 protein Q0E413 Q0E413_ORYSJ Os02g0142100 Os02g0142100 OSNPB_020142100 ENOG411EA6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ketopantoate reductase PanE/ApbA C terminal NA NA NA NA NA NA NA ENOG411EA6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain-containing membrane protein At4g22990-like NA NA NA NA NA NA NA ENOG411EA6T C0LGJ9,Q9M9S4,A0A1P8AX69,A0A1P8AX88 Y2278_ARATH,Y1143_ARATH,A0A1P8AX69_ARATH,A0A1P8AX88_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g02780 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g14390 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 82002,80059,69428,74907 Probable LRR receptor-like serine/threonine-protein kinase At2g02780 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g14390 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] locus:2058872; AT2G02780,AT1G14390 STYKc NA NA NA NA NA NA NA ENOG411EA6U ATHB-X,HB18 Q8GXM7,A0A1P8AQQ9 ATHBX_ARATH,A0A1P8AQQ9_ARATH Homeobox-leucine zipper protein ATHB-X (HD-ZIP protein ATHB-X) (Homeodomain transcription factor ATHB-X),Homeobox-leucine zipper protein 18 FUNCTION: Probable transcription factor. {ECO:0000250}. 23519,20485 Homeobox-leucine zipper protein ATHB-X (HD-ZIP protein ATHB-X) (Homeodomain transcription factor ATHB-X),Homeobox-leucine zipper protein 18 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2013980; AT1G70920 HALZ NA NA NA NA NA NA NA ENOG411EA6V Q9LRQ7,Q9LRQ6,F4J479 BAHD2_ARATH,Q9LRQ6_ARATH,F4J479_ARATH BAHD acyltransferase At3g29680 (EC 2.3.1.-) (Probable anthocyanin acyltransferase),HXXXD-type acyl-transferase family protein,Transferase-like protein 2.3.1.- 50729,20112,22600 BAHD acyltransferase At3g29680 (EC 2.3.1.-) (Probable anthocyanin acyltransferase),HXXXD-type acyl-transferase family protein,Transferase-like protein transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],transferase activity [GO:0016740] locus:2091808;,locus:2091818;,locus:504955717; AT3G29680,AT3G29690,AT3G29636 Transferase family NA NA NA NA NA NA NA ENOG411EA6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Family with sequence similarity 108 member NA NA NA NA NA NA NA ENOG411EA6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfite exporter TauE/SafE NA NA NA NA NA NA NA ENOG411EA6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0648600 protein A2ZW00 A2ZW00_ORYSJ Os01g0648600 OsJ_02818 OSNPB_010648600 ENOG411EA6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EA6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET NA NA NA NA NA NA NA ENOG411EA6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411EA6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EA6B KIN14O,KIN14P F4IAR2,Q0WN69,A0A1P8AVE6,A0A1P8AN92,A0A1P8AVE8,A0A1P8AVA1 KN14O_ARATH,KN14P_ARATH,A0A1P8AVE6_ARATH,A0A1P8AN92_ARATH,A0A1P8AVE8_ARATH,A0A1P8AVA1_ARATH Kinesin-like protein KIN-14O,Kinesin-like protein KIN-14P,p-loop containing nucleoside triphosphate hydrolases superfamily protein ARA:GQT-2638-MONOMER; 128008,115129,113455,106123,110848,129378 Kinesin-like protein KIN-14O,Kinesin-like protein KIN-14P,p-loop containing nucleoside triphosphate hydrolases superfamily protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2014129;,locus:2027854; AT1G18410,AT1G73860 KISc NA NA NA NA NA NA NA ENOG411EA6C Q949S7,A0A1P8BBC4 Q949S7_ARATH,A0A1P8BBC4_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At5g15910),NAD(P)-binding Rossmann-fold superfamily protein 28826,24237 NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At5g15910),NAD(P)-binding Rossmann-fold superfamily protein mitochondrion [GO:0005739]; NADH dehydrogenase activity [GO:0003954]; ubiquinone-6 biosynthetic process [GO:1901006] locus:2146092; AT5G15910 NmrA-like family NA NA NA NA NA NA NA ENOG411EA6D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os03g0778800 protein Q10CY3 Q10CY3_ORYSJ Os03g0778800 LOC_Os03g56724 OsJ_12797 OSNPB_030778800 ENOG411EA6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Cysteine-rich receptor-like protein kinase 10 (Cysteine-rich RLK10) (EC 2.7.11.-),Os07g0541700 protein (Fragment) Q0D5R2,Q0D5R0 CRK10_ORYSJ,Q0D5R0_ORYSJ CRK10 Os07g0541500 LOC_Os07g35700 OJ1008_E09.116 OsJ_24608 P0458H05.133,Os07g0541700 Os07g0541700 OSNPB_070541700 FUNCTION: Involved in disease resistance. Required for NPR1/NH1-mediated immunity to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). Required for the benzothiadiazole (BTH)-induced immune response. Probably regulated by the transcription factor TGA2.1. {ECO:0000269|PubMed:16100779}. ENOG411EA6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-glucosidase activity Beta-glucosidase 19 (Os5bglu19) (EC 3.2.1.21),Beta-glucosidase 20 (Os5bglu20) (EC 3.2.1.21),Beta-glucosidase 21 (Os5bglu21) (EC 3.2.1.21),Os05g0365700 protein,Os05g0366200 protein Q0DIT2,B9FHH2,Q60DY1,C7J2I5,A0A0P0WLF3 BGL19_ORYSJ,BGL20_ORYSJ,BGL21_ORYSJ,C7J2I5_ORYSJ,A0A0P0WLF3_ORYSJ BGLU19 Os05g0365600 LOC_Os05g30250 OSJNBa0090H02.2 OSJNBb0111K12.10 P0683B02.14,BGLU20 Os05g0365700 LOC_Os05g30280 OsJ_18258 OSJNBa0090H02.5 OSJNBb0111K12.13,BGLU21 Os05g0366000 LOC_Os05g30300 OsJ_18259 OSJNBa0090H02.7,Os05g0365700 Os05g0365700 OSNPB_050365700,Os05g0366200 OSNPB_050366200 ENOG411EA6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl-CoA dehydrogenase C-terminal domain NA NA NA NA NA NA NA ENOG411DXS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os09g0237600 protein (Putative serine/threonine protein kinase) Q69ML2 Q69ML2_ORYSJ Os09g0237600 OsJ_28494 OSJNBa0017O03.10 OSNPB_090237600 ENOG411DXS8 F2N1.39-01 Q9M159,A0A1P8B5L7 Q9M159_ARATH,A0A1P8B5L7_ARATH Glycosyl hydrolase superfamily protein (Uncharacterized protein AT4g01040),Glycosyl hydrolase superfamily protein R-ATH-114608; 49142,48940 Glycosyl hydrolase superfamily protein (Uncharacterized protein AT4g01040),Glycosyl hydrolase superfamily protein endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032],integral component of membrane [GO:0016021]; chitin binding [GO:0008061]; hydrolase activity [GO:0016787]; carbohydrate metabolic process [GO:0005975] locus:2124988; AT4G01040 chitinase domain-containing protein Os01g0619800 protein A0A0P0V5D4 A0A0P0V5D4_ORYSJ Os01g0619800 OSNPB_010619800 ENOG411DXS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRG1-like NA NA NA NA NA NA NA ENOG411DXS3 Q56Y63 Q56Y63_ARATH SNF2 domain protein (Uncharacterized protein At5g11780) 57742 SNF2 domain protein (Uncharacterized protein At5g11780) locus:2181895; AT5G11780 NA Os01g0600300 protein (cDNA clone:J013112G07, full insert sequence) (cDNA clone:J033112N23, full insert sequence),Os01g0600300 protein (Fragment) Q5ZAG1,Q0JLH4 Q5ZAG1_ORYSJ,Q0JLH4_ORYSJ P0025A05.39-1 Os01g0600300 P0518F01.10-1 OSNPB_010600300,Os01g0600300 Os01g0600300 OSNPB_010600300 ENOG411DXS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q69UI5 Q69UI5_ORYSJ Os08g0116900 Os08g0116900 OSNPB_080116900 P0470F10.14 ENOG411DXS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter NA NA NA NA NA NA NA ENOG411DXSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DXSN F4JSP7,A0A1P8B863,A0A1P8B875,A0A1P8B866,A0A1P8B868,A0A1P8B864 F4JSP7_ARATH,A0A1P8B863_ARATH,A0A1P8B875_ARATH,A0A1P8B866_ARATH,A0A1P8B868_ARATH,A0A1P8B864_ARATH Nucleoporin 305914,304574,305118,300910,279828,305369 Nucleoporin integral component of membrane [GO:0016021]; plasmodesma [GO:0009506],integral component of membrane [GO:0016021] locus:2124789; AT4G31570 NA Os02g0148300 protein (Fragment) Q0E3Y4 Q0E3Y4_ORYSJ Os02g0148300 Os02g0148300 OSNPB_020148300 ENOG411DXSB MSL1 Q8VZL4,F4JH25 MSL1_ARATH,F4JH25_ARATH Mechanosensitive ion channel protein 1, mitochondrial (Mechanosensitive channel of small conductance-like 1) (MscS-Like protein 1),Mechanosensitive ion channel-like protein FUNCTION: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. {ECO:0000250}. 53884,28612 Mechanosensitive ion channel protein 1, mitochondrial (Mechanosensitive channel of small conductance-like 1) (MscS-Like protein 1),Mechanosensitive ion channel-like protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; mechanically-gated ion channel activity [GO:0008381]; cellular response to oxidative stress [GO:0034599],integral component of membrane [GO:0016021] locus:2126061;,locus:505006411; AT4G00290,AT4G00234 Mechanosensitive ion channel Mechanosensitive ion channel domain-containing protein-like (Os02g0681000 protein) (cDNA clone:J033125M22, full insert sequence),Os04g0578700 protein,Os04g0578700 protein (Fragment) Q6EPN3,A0A0P0WDR2,A0A0P0WDV9 Q6EPN3_ORYSJ,A0A0P0WDR2_ORYSJ,A0A0P0WDV9_ORYSJ Os02g0681000 OsJ_07934 OSNPB_020681000 P0663F07.32,Os04g0578700 OSNPB_040578700 ENOG411DXSD MOJ9.14 Q8RX56 Q8RX56_ARATH At5g06970/MOJ9_14 (Plant/protein (DUF810)) FUNCTION: Controls the tethering of the proton ATPase AHA1 to the plasma membrane. Is essential for stomatal opening in response to low concentration of carbon dioxide and light. {ECO:0000269|PubMed:23896897}. 124523 At5g06970/MOJ9_14 (Plant/protein (DUF810)) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; protein targeting to plasma membrane [GO:0072661]; stomatal movement [GO:0010118] locus:2169424; AT5G06970 Protein of unknown function (DUF810) Os03g0683700 protein (Fragment) A0A0P0W1X5 A0A0P0W1X5_ORYSJ Os03g0683700 OSNPB_030683700 ENOG411DXSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0490400 protein (cDNA clone:J023030O13, full insert sequence) Q6F323 Q6F323_ORYSJ Os05g0490400 Os05g0490400 OsJ_19019 OSJNBa0088I06.4 OSNPB_050490400 ENOG411DXSZ Q8H101,A0A1P8AUA9,A0A1P8AU76,A0A1P8AU86,F4I5G9 Q8H101_ARATH,A0A1P8AUA9_ARATH,A0A1P8AU76_ARATH,A0A1P8AU86_ARATH,F4I5G9_ARATH AT1G10660 protein (Transmembrane protein) (Uncharacterized protein At1g10660),Transmembrane protein 36762,40521,29335,37556,40830 AT1G10660 protein (Transmembrane protein) (Uncharacterized protein At1g10660),Transmembrane protein integral component of membrane [GO:0016021] locus:2019928;,locus:504956261; AT1G10660,AT1G70505 NA NA NA NA NA NA NA NA ENOG411DXST CMT3,CMT2,CMT1 Q94F88,Q94F87,O49139,A0A1P8B8N3 CMT3_ARATH,CMT2_ARATH,CMT1_ARATH,A0A1P8B8N3_ARATH DNA (cytosine-5)-methyltransferase CMT3 (EC 2.1.1.37) (Chromomethylase 3) (Protein CHROMOMETHYLASE 3),DNA (cytosine-5)-methyltransferase CMT2 (EC 2.1.1.37) (Chromomethylase 2) (Protein CHROMOMETHYLASE 2),Putative DNA (cytosine-5)-methyltransferase CMT1 (EC 2.1.1.37) (Chromomethylase 1) (Protein CHROMOMETHYLASE 1),Chromomethylase 2 Wild type morphology; exhibits decreased CpXpG methylation of the Superman (SUP) gene and of other sequences throughout the genome; also show reactivated expression of endogenous retrotransposon sequences; encodes a cytosine methyltransferase homolog.,Phenotype not described.,Derepression of SUP gene silencing (induced by clk-st) leading to plants with a wildtype floral phenotype.,Partial derepression of SUP gene silencing (induced by clk-st) leading to plants with a wildtype floral phenotype.,Methylation pattern similar to that observed with the cmt3-7 mutant. Decreased CpXpG DNA methylation-S. Jacobsen-2001 FUNCTION: Involved in the CpXpG methylation and in gene silencing. Methylates preferentially transposon-related sequences. Functionally redundant to DRM1/DRM2 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation. {ECO:0000269|PubMed:11349138, ECO:0000269|PubMed:11459824, ECO:0000269|PubMed:11790305, ECO:0000269|PubMed:14680640}.,FUNCTION: May be involved in the CpXpG methylation and in gene silencing. {ECO:0000250}. 2.1.1.37; 2.1.1.37 94905,145015,89219,139704 DNA (cytosine-5)-methyltransferase CMT3 (EC 2.1.1.37) (Chromomethylase 3) (Protein CHROMOMETHYLASE 3),DNA (cytosine-5)-methyltransferase CMT2 (EC 2.1.1.37) (Chromomethylase 2) (Protein CHROMOMETHYLASE 2),Putative DNA (cytosine-5)-methyltransferase CMT1 (EC 2.1.1.37) (Chromomethylase 1) (Protein CHROMOMETHYLASE 1),Chromomethylase 2 nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; chromatin silencing [GO:0006342]; DNA methylation [GO:0006306]; DNA methylation on cytosine within a CNG sequence [GO:0010425]; histone H3-K9 methylation [GO:0051567]; negative regulation of gene expression, epigenetic [GO:0045814]; transcription, DNA-templated [GO:0006351]; zygote asymmetric cytokinesis in embryo sac [GO:0010069],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; cellular response to heat [GO:0034605]; covalent chromatin modification [GO:0016569]; DNA methylation on cytosine within a CHH sequence [GO:0010426]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]; covalent chromatin modification [GO:0016569]; DNA mediated transformation [GO:0009294]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886] TISSUE SPECIFICITY: Expressed in flowers. Not detected in leaves, roots, seedlings and plants prior formation of flower buds. {ECO:0000269|PubMed:9584105}. locus:2205015;,locus:2117104;,locus:2025787; AT1G69770,AT4G19020,AT1G80740 Cytosine-specific methyltransferase DNA (cytosine-5)-methyltransferase CMT3 (EC 2.1.1.37) (Chromomethylase 3) (OsCMT3a),DNA (cytosine-5)-methyltransferase CMT2 (EC 2.1.1.37) (Chromomethylase 2) (OsCMT2),DNA (cytosine-5)-methyltransferase CMT1 (EC 2.1.1.37) (Chromomethylase 1) (OsMET3b) C0SQ89,Q5KQL9,A0A0P0VUY4 CMT3_ORYSJ,CMT2_ORYSJ,CMT1_ORYSJ CMT3 Os10g0104900 LOC_Os10g01570 OsJ_30466 OSJNBa0071K19.14,CMT2 Os05g0224800/Os05g0224900 LOC_Os05g13780/LOC_Os05g13790 OJ1732_H01.8 OJ1732_H01.9,CMT1 Os03g0226800 LOC_Os03g12570 OJ1626B05.3 DISRUPTION PHENOTYPE: Reduced overall plant height, early flowering and reduced fertility. {ECO:0000269|PubMed:26243209}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:26243209}. FUNCTION: Involved in CpXpG DNA methylation. Plays a critical role in the maintenance of CpXpG DNA methylation and suppression of a wide spectrum of transposable element (TE) activities. Required for proper plant development in reproductive stage. {ECO:0000269|PubMed:26243209}.,FUNCTION: Involved in CpXpG DNA methylation. {ECO:0000250|UniProtKB:C0SQ89}.,FUNCTION: Involved in CpXpG DNA methylation (By similarity). May not play a major role in maintaining CpXpG methylation (Probable). {ECO:0000250|UniProtKB:C0SQ89, ECO:0000305|PubMed:26243209}. ENOG411E1DV Q9SYG8,Q6NKR3,A0A1P8AP56,A0A1P8AP59 Q9SYG8_ARATH,Q6NKR3_ARATH,A0A1P8AP56_ARATH,A0A1P8AP59_ARATH F15I1.20 protein (Membrane fusion protein Use1),At3g55600 (Membrane fusion protein Use1),Membrane fusion protein Use1 26561,26836,27366,28081 F15I1.20 protein (Membrane fusion protein Use1),At3g55600 (Membrane fusion protein Use1),Membrane fusion protein Use1 integral component of membrane [GO:0016021] locus:2014360;,locus:2078901; AT1G54110,AT3G55600 vesicle transport protein Cation exchanger-like protein (Os08g0533700 protein) (cDNA clone:J033060E01, full insert sequence),Os08g0534350 protein (Os08g0535000 protein) (Os08g0535050 protein) (cDNA clone:J013062D13, full insert sequence),Os02g0306100 protein Q6YZC6,Q6YZF6,Q6K2Z1 Q6YZC6_ORYSJ,Q6YZF6_ORYSJ,Q6K2Z1_ORYSJ Os08g0533700 Os08g0533700 OsJ_28069 OSNPB_080533700 P0702C09.3 P0702E04.41,Os08g0535000 Os08g0534350 Os08g0535050 OSJNBa0033D24.9 OSNPB_080534350 OSNPB_080535000 P0702C09.24,P0543C11.20 Os02g0306100 OSNPB_020306100 ENOG411E1DX MYH19.70 F4KFW5 F4KFW5_ARATH Pectin lyase-like superfamily protein 41950 Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2178052; AT5G39910 Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411E1DB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain Os09g0466300 protein (Fragment) A0A0P0XMY4 A0A0P0XMY4_ORYSJ Os09g0466300 OSNPB_090466300 ENOG411E1DA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Hydroxyproline-rich glycoprotein family protein, putative, expressed) (Os03g0411000 protein) Q75K31 Q75K31_ORYSJ Os03g0411000 LOC_Os03g29750 Os03g0411000 OSJNBb0108E08.22 OSNPB_030411000 ENOG411E1DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA malic enzyme Malic enzyme Q5JKW5 Q5JKW5_ORYSJ Os01g0743500 OSNPB_010743500 P0439E07.33 ENOG411E1DE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os12g0160900 protein (Transposon protein, putative, unclassified, expressed) (cDNA clone:J013039J03, full insert sequence) Q2QXD6 Q2QXD6_ORYSJ LOC_Os12g06380 Os12g0160900 OsJ_35306 OSNPB_120160900 ENOG411E1DI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase/Carboxylesterase Probable carboxylesterase Os04g0669600 (EC 3.1.1.-) Q0J968 CAEH2_ORYSJ Os04g0669600 LOC_Os04g57380 OsJ_16563 OSJNBa0043A12.22 FUNCTION: Possesses carboxylesterase activity in vitro. {ECO:0000250|UniProtKB:Q84WK4}. ENOG411DW38 F24I3.150 Q9M1J3,Q9ZVB8 Q9M1J3_ARATH,Q9ZVB8_ARATH Glutaredoxin family protein (Uncharacterized protein F24I3.150),At2g41330/F13H10.12 (Glutaredoxin family protein) (Uncharacterized protein At2g41330) 45718,44388 Glutaredoxin family protein (Uncharacterized protein F24I3.150),At2g41330/F13H10.12 (Glutaredoxin family protein) (Uncharacterized protein At2g41330) cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2080635;,locus:2040267; AT3G57070,AT2G41330 glutaredoxin family Glutaredoxin family protein, expressed (Os03g0356400 protein) Q10L92 Q10L92_ORYSJ Os03g0356400 LOC_Os03g24030 Os03g0356400 OSNPB_030356400 ENOG411DW39 Q9FG09 Q9FG09_ARATH Gb|AAD30234.1 (Lipase (DUF620)) (Uncharacterized protein At5g06610) (Uncharacterized protein F15M7.14) 40936 Gb|AAD30234.1 (Lipase (DUF620)) (Uncharacterized protein At5g06610) (Uncharacterized protein F15M7.14) locus:2144128; AT5G06610 Protein of unknown function (DUF620) Os03g0167400 protein,Os10g0411100 protein Q0DUU3,A0A0N7KRS2 Q0DUU3_ORYSJ,A0A0N7KRS2_ORYSJ Os03g0167400 Os03g0167400 OSNPB_030167400,Os10g0411100 OSNPB_100411100 ENOG411DW32 PAP6,FIB4 Q9LW57,A0A1I9LQU3,A0A1I9LQU5 PAP6_ARATH,A0A1I9LQU3_ARATH,A0A1I9LQU5_ARATH Plastid-lipid-associated protein 6, chloroplastic (Fibrillin-4) (Fibrillin-6) (Harpin-binding protein 1) (HrBP1) (Plastoglobulin 30.4) (AtPGL30.4),Plastid-lipid associated protein PAP / fibrillin family protein DISRUPTION PHENOTYPE: Increased susceptibility to ozone and to bacterial disease. {ECO:0000269|PubMed:20813909}. Sensitive to ozone; Susceptible to bacterial speck disease-T. McNellis-2010 FUNCTION: Required for plastoglobule development and resistance to multiple stresses. Regulates plastoglobule osmiophilic content. May be involved in the transport of lipophilic antioxidants in and out of the plastoglobule. {ECO:0000269|PubMed:20813909}. 30455,22464,23505 Plastid-lipid-associated protein 6, chloroplastic (Fibrillin-4) (Fibrillin-6) (Harpin-binding protein 1) (HrBP1) (Plastoglobulin 30.4) (AtPGL30.4),Plastid-lipid associated protein PAP / fibrillin family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; chloroplast organization [GO:0009658]; defense response to bacterium [GO:0042742]; response to ozone [GO:0010193] locus:2090890; AT3G23400 harpin binding protein 1 Harpin binding protein 1, putative, expressed (Os11g0595200 protein) (cDNA clone:001-208-A08, full insert sequence) (cDNA clone:J023080K06, full insert sequence),Os05g0304200 protein (Fragment) Q2R1S1,C7J327 Q2R1S1_ORYSJ,C7J327_ORYSJ LOC_Os11g38260 Os11g0595200 OsJ_34458 OSNPB_110595200,Os05g0304200 Os05g0304200 OSNPB_050304200 ENOG411DW33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) Os01g0909400 protein Q5N869 Q5N869_ORYSJ Os01g0909400 Os01g0909400 OSNPB_010909400 P0456E05.23 ENOG411DW30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium-dependent protein kinase isoform Calcium-dependent protein kinase 23 (OsCDPK23) (OsCPK23) (EC 2.7.11.1) (Calcium-dependent protein kinase isoform 1) (CDPK1) (Seed-specific protein kinase) P53682 CDPKN_ORYSJ CPK23 SPK Os10g0539600 LOC_Os10g39420 OSJNBb0064P21.2 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Involved in the activation of sucrose synthase 2 (SUS2) in developing seeds. Phosphorylates SUS2 at Ser-10 in a calcium-dependent manner. Phosphorylation of Ser-10 leads to the activation of SUS2, which supplies substrates for the biosynthesis of storage products in immature seeds (PubMed:11910009). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:11910009}. ENOG411DW31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Responsible for the transport of sucrose into the cell with the concomitant uptake of protons (symport system) Sucrose transport protein SUT5 (Sucrose permease 5) (Sucrose transporter 5) (OsSUT5) (Sucrose-proton symporter 5) Q69JW3 SUT5_ORYSJ SUT5 SUT5Z Os02g0576600 LOC_Os02g36700 B1342F01.9 FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin, salicin, helicin, alpha-phenylglucoside and beta-phenylglucoside. {ECO:0000269|PubMed:19965875}. ENOG411DW36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) Tubulin alpha chain Q10PW2 Q10PW2_ORYSJ TubA LOC_Os03g11970 Os03g0219300 OsJ_09943 OSNPB_030219300 FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. {ECO:0000256|RuleBase:RU000352}. ENOG411DW37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAHD family acyltransferase clade I (EC 2.3.1.-) NA NA NA NA NA NA NA ENOG411DW34 PUB1 Q9LF41 UBE4_ARATH Probable ubiquitin conjugation factor E4 (EC 2.3.2.27) (Plant U-box protein 1) (RING-type E3 ubiquitin transferase E4) (U-box domain-containing protein 1) (Ubiquitin-fusion degradation protein 2-like) (UB fusion protein 2-like) FUNCTION: Ubiquitin-protein ligase that may function as an E3 ligase in conjunction with specific E1 and E2 ligases. May also function as an E4 ligase mediating the assembly of polyubiquitin chain assembly on substrates monoubiquitinated by another E3 ubiquitin ligase. {ECO:0000250|UniProtKB:P54860, ECO:0000250|UniProtKB:Q9ES00}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000250|UniProtKB:P54860, ECO:0000250|UniProtKB:Q9ES00}. 2.3.2.27 117528 Probable ubiquitin conjugation factor E4 (EC 2.3.2.27) (Plant U-box protein 1) (RING-type E3 ubiquitin transferase E4) (U-box domain-containing protein 1) (Ubiquitin-fusion degradation protein 2-like) (UB fusion protein 2-like) cytosol [GO:0005829]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; ubiquitin-ubiquitin ligase activity [GO:0034450]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2180862; AT5G15400 ubiquitin conjugation factor Os03g0427900 protein (Putative ubiquitin conjugation factor) (U-box domain containing protein, expressed) (cDNA, clone: J090079I23, full insert sequence),Os12g0553100 protein Q75I67,B9GDP1 Q75I67_ORYSJ,B9GDP1_ORYSJ OSJNBa0083F15.15 Os03g0427900 LOC_Os03g31400 OSNPB_030427900,Os12g0553100 OsJ_36449 OSNPB_120553100 ENOG411DW35 RCD1 Q8RY59,F4ICM3 RCD1_ARATH,F4ICM3_ARATH Inactive poly [ADP-ribose] polymerase RCD1 (Protein RADICAL-INDUCED CELL DEATH 1),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) DISRUPTION PHENOTYPE: Small plants, altered leaf shape and early flowering. Plants lacking RCD1 show enhanced resistance to methyl viologen, tolerance to freezing and supplementary UV-B irradiation, reduced sensitivity to abscisic acid, ethylene and jasmonate, increased sensitivity to ozone and up-regulation of reactive oxygen species scavenging enzymes. {ECO:0000269|PubMed:11041881, ECO:0000269|PubMed:14657410, ECO:0000269|PubMed:15208394, ECO:0000269|PubMed:15728341, ECO:0000269|PubMed:19548978, ECO:0000269|PubMed:20009514, ECO:0000269|PubMed:21172813}. Abnormal root architecture; Semi-dwarf; Malformed leaves; Small petals; Early flowering; Resistant to UV-B light; Sensitive to ozone-R. Lamb-2009 FUNCTION: Inactive ADP-ribosyltransferase that functions with SRO1 to regulate oxidative stress, hormonal and developmental responses. Required for embryogenesis, vegetative and reproductive development, and abiotic stress responses. May regulate several stress-responsive genes. Seems to play a larger developmental role than SRO1. Does not bind NAD in vitro. {ECO:0000269|PubMed:11018516, ECO:0000269|PubMed:11041881, ECO:0000269|PubMed:14657410, ECO:0000269|PubMed:15208394, ECO:0000269|PubMed:15728341, ECO:0000269|PubMed:16926493, ECO:0000269|PubMed:19548978, ECO:0000269|PubMed:19625634, ECO:0000269|PubMed:20226034, ECO:0000269|PubMed:21172813}. MISCELLANEOUS: Plants overexpressing RCD1 show a weak rcd1 mutant phenotype. 2.4.2.30 65697,63764 Inactive poly [ADP-ribose] polymerase RCD1 (Protein RADICAL-INDUCED CELL DEATH 1),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) cytoplasm [GO:0005737]; nuclear matrix [GO:0016363]; nucleus [GO:0005634]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; defense response to bacterium, incompatible interaction [GO:0009816]; embryo development ending in seed dormancy [GO:0009793]; ethylene-activated signaling pathway [GO:0009873]; jasmonic acid mediated signaling pathway [GO:0009867]; lateral root morphogenesis [GO:0010102]; nitric oxide biosynthetic process [GO:0006809]; programmed cell death [GO:0012501]; regulation of reactive oxygen species metabolic process [GO:2000377]; response to ethylene [GO:0009723]; response to osmotic stress [GO:0006970]; response to ozone [GO:0010193]; response to salt stress [GO:0009651]; response to superoxide [GO:0000303]; response to water deprivation [GO:0009414]; viral process [GO:0016032],NAD+ ADP-ribosyltransferase activity [GO:0003950] DEVELOPMENTAL STAGE: Expressed in the embryo proper at the globular stage. Expressed in the embryo until the torpedo stage, after which expression within the procambial strands becomes pronounced. {ECO:0000269|PubMed:21172813}. TISSUE SPECIFICITY: Expressed in young developing tissues, such as young leaves and flowers and root tips. In mature plants, expressed in vasculature of leaves and roots, and guard cells. {ECO:0000269|PubMed:11018516, ECO:0000269|PubMed:11041881, ECO:0000269|PubMed:19548978, ECO:0000269|PubMed:21172813}. locus:2031700; AT1G32230 inactive poly ADP-ribose polymerase RCD1-like Os10g0577800 protein (Poly polymerase catalytic domain containing protein, expressed) (Putative CEO protein) (cDNA clone:J023139M21, full insert sequence),Os10g0577800 protein (Fragment) Q8W3G3,A0A0N7KS98 Q8W3G3_ORYSJ,A0A0N7KS98_ORYSJ OSJNBa0035H01.4 LOC_Os10g42710 Os10g0577800 OsJ_32586 OSNPB_100577800,Os10g0577800 OSNPB_100577800 ENOG411DW3J O22682 CYSK4_ARATH Probable S-sulfocysteine synthase, chloroplastic (EC 2.5.1.47) (Beta-substituted Ala synthase 5;1) (ARAth-Bsas5;1) (CS26) (O-acetylserine sulfhydrylase) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:18024555). Exhibits a reduction in size and shows paleness, but penetrance of the growth phenotype depended on the light regime (PubMed:20179139). {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:20179139, ECO:0000269|PubMed:22829322}. Dwarf; Pale green leaves-L. Romero-2010 FUNCTION: S-sulfocysteine synthase that plays an important role in chloroplast function and are essential for light-dependent redox regulation within the chloroplast. Probably unable to interact with SAT and to form the decameric Cys synthase complex (CSC) and is therefore not an enzymatically true OASTL protein. {ECO:0000269|PubMed:18223034, ECO:0000269|PubMed:20179139, ECO:0000269|PubMed:23333972}. ARA:AT3G03630-MONOMER; 2.5.1.47 43161 Probable S-sulfocysteine synthase, chloroplastic (EC 2.5.1.47) (Beta-substituted Ala synthase 5;1) (ARAth-Bsas5;1) (CS26) (O-acetylserine sulfhydrylase) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; thylakoid lumen [GO:0031977]; cysteine synthase activity [GO:0004124]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cysteine biosynthetic process from serine [GO:0006535]; photosynthesis [GO:0015979]; photosynthetic acclimation [GO:0009643]; regulation of hydrogen peroxide metabolic process [GO:0010310]; regulation of superoxide metabolic process [GO:0090322] locus:2096454; AT3G03630 cysteine synthase Cysteine synthase (EC 2.5.1.47) Q5N761 Q5N761_ORYSJ Os01g0814800 OsJ_03854 OSJNBa0085D07.30 OSNPB_010814800 ENOG411DW3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isopentenyl transferase Adenylate isopentenyltransferase (Os05g0551700 protein) (Putative tRNA delta(2)-isopentenylpyrophosphate transferase),Adenylate isopentenyltransferase (Os01g0688300 protein) Q6L4G2,Q33CD3 Q6L4G2_ORYSJ,Q33CD3_ORYSJ P0560C03.14 OsIPT7 Os05g0551700 OSNPB_050551700,OsIPT8 Os01g0688300 OSNPB_010688300 ENOG411DW3H AGO7 Q9C793 AGO7_ARATH Protein argonaute 7 (Protein ZIPPY) DISRUPTION PHENOTYPE: First leaves are elongated and curl downward. Increased number of hydathodes per leaf. Accelerated appearance of abaxial trichomes. Presence of stigmatic tissue in the middle of the septum at the apical end of the carpels. {ECO:0000269|PubMed:14521841}. Downward-curled leaf margins. Early vegetative phase change-R. Poethig-2003 FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for the processing of 21 nucleotide trans-acting siRNAs (ta-siRNAs) derived from TAS3a transcripts. Associates preferentially with the microRNA (miRNA) miR390 which guides the cleavage of TAS3 precursor RNA. Seems to act as miR390 specific slicer. Associates mainly with small RNAs of 21 nucleotide in length and with a 5' terminal adenosine. Acts in the RDR6/SGS3/DCL4/AGO7 trans-acting siRNA pathway involved in leaf developmental timing. Does not seems to act on leaf polarity. Required for the production of the 30-40nt bacterial-induced long siRNAs (lsiRNA). Involved in antiviral RNA silencing by contributing to efficient viral RNAs clearance. Targets less structured viral RNAs than AGO1 which is capable of targeting RNAs with more compact structures. {ECO:0000269|PubMed:14521841, ECO:0000269|PubMed:16682354, ECO:0000269|PubMed:16682355, ECO:0000269|PubMed:16699177, ECO:0000269|PubMed:16818444, ECO:0000269|PubMed:18003861, ECO:0000269|PubMed:18342362, ECO:0000269|PubMed:18799732}. R-ATH-426486;R-ATH-426496;R-ATH-5578749; 113397 Protein argonaute 7 (Protein ZIPPY) cytoplasm [GO:0005737]; intracellular ribonucleoprotein complex [GO:0030529]; RNA binding [GO:0003723]; defense response to virus [GO:0051607]; gene silencing by miRNA [GO:0035195]; maintenance of shoot apical meristem identity [GO:0010492]; production of lsiRNA involved in RNA interference [GO:0010599]; production of ta-siRNAs involved in RNA interference [GO:0010267]; regulation of development, heterochronic [GO:0040034]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; vegetative phase change [GO:0010050]; viral gene silencing in virus induced gene silencing [GO:0060145] TISSUE SPECIFICITY: Expressed in leaves and floral buds, and at low levels in roots. {ECO:0000269|PubMed:18342362}. locus:2007111; AT1G69440 Argonaute Protein argonaute 7 (OsAGO7) (Protein SHOOT ORGANIZATION 2) (Protein SHOOTLESS 4) Q75HC2 AGO7_ORYSJ AGO7 SHL4 SHO2 Os03g0449200 LOC_Os03g33650 OSJNBa0034E08.23 DISRUPTION PHENOTYPE: Lack of the shoot apical meristem (SAM) in the embryo, but formation of radicle and scutellum. In weak alleles, formation of an incomplete SAM and abnormal leaves production. {ECO:0000269|PubMed:17804793}. FUNCTION: Involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). Regulates shoot apical meristem (SAM) initiation and maintenance and leaf polarization through the trans-acting siRNAS (ta-siRNAs) pathway which probably modulates the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. {ECO:0000250, ECO:0000269|PubMed:17216479, ECO:0000269|PubMed:17804793}. ENOG411DW3I FLDH Q9SZB3,F4JIW8,B3H6K6 Q9SZB3_ARATH,F4JIW8_ARATH,B3H6K6_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein AT4g33360) (Uncharacterized protein F17M5.120),NAD(P)-binding Rossmann-fold superfamily protein Germination and stomatal closure insensitive to ABA-D. Crowell-2010 1.1.1.354; 37861,35980,33428 NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein AT4g33360) (Uncharacterized protein F17M5.120),NAD(P)-binding Rossmann-fold superfamily protein endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; coenzyme binding [GO:0050662]; farnesol dehydrogenase activity [GO:0047886]; farnesol metabolic process [GO:0016487]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2119161; AT4G33360 Polysaccharide biosynthesis protein Os03g0184550 protein (Putative dihydroflavonal-4-reductase) Q94HG6 Q94HG6_ORYSJ OSJNBa0032G08.1 Os03g0184550 OSNPB_030184550 ENOG411DW3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tyrosine DOPA decarboxylase Os10g0380800 protein (Putative Tyrosine/DOPA decarboxylase) (Pyridoxal-dependent decarboxylase conserved domain containing protein),Os01g0770200 protein (Putative tyrosine/dopa decarboxylase) (cDNA clone:J013041D01, full insert sequence),Os05g0510600 protein Q7G6M2,Q94EE9,A0A0P0WPH7 Q7G6M2_ORYSJ,Q94EE9_ORYSJ,A0A0P0WPH7_ORYSJ LOC_Os10g23900 Os10g0380800 OSJNBa0019N10.32 OSJNBa0032N04.8 OSNPB_100380800,Os01g0770200 OSNPB_010770200 P0665A11.14,Os05g0510600 OSNPB_050510600 ENOG411DW3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Whole genome shotgun sequence of line PN40024 scaffold_7.assembly12x (Fragment) Expressed protein (Os11g0149100 protein),Os12g0147000 protein Q53PX7,A0A0P0Y6X5 Q53PX7_ORYSJ,A0A0P0Y6X5_ORYSJ LOC_Os11g05160 Os11g0149100 OSNPB_110149100,Os12g0147000 OSNPB_120147000 ENOG411DW3B Q5BPG9 Q5BPG9_ARATH Uncharacterized protein 41874 Uncharacterized protein locus:2154202; AT5G53220 NA Os01g0221300 protein (Fragment) A0A0P0UZS4 A0A0P0UZS4_ORYSJ Os01g0221300 OSNPB_010221300 ENOG411DW3C POT1A,POT1C,POT1B Q56Y52,A9JTY4,Q6NKX5,A0A1P8B2L2 POT1A_ARATH,POT1C_ARATH,POT1B_ARATH,A0A1P8B2L2_ARATH Protection of telomeres protein 1a (AtPOT1a) (Protection of telomeres protein 1),Protection of telomeres protein 1c (AtPOT1c) (Protection of telomeres protein 3),Protection of telomeres protein 1b (AtPOT1b) (Protection of telomeres protein 2),Nucleic acid-binding, OB-fold-like protein No visible phenotype.,Telomeres in wild-type siblings appeared as a homogeneous smear of products ranging from 1.6 to 4.5 kb. Telomere tracts in pot1-1 were much shorter than in wild-type and showed a more discrete banding pattern.,The fate of telomeres in pot1 mutants was followed for several plant generations and it was found that telomere length in pot1-1 decreased progressively with each generation. The ever-shorter-telomere phenotype and sharp TRF banding profile were strikingly similar to the phenotype associated with tert mutants which lose 200-500 bp of telomeric DNA per plant generation.,The mutants failed to elongate their telomeres and exhibited a heterogeneous profile of TRF products similar to that seen in ku70 tert.,Same degree of telomere shortening as in the pot1 ku70 and ku70 tert double mutants.,Telomeres in the double mutants shortened at the same rate as in either single mutant.,Telomeres of the same length and sharp banding profile were found in the double mutant as in their tert and pot1-1 siblings.,Telomeres in wild-type siblings appeared as a homogeneous smear of products ranging from 1.6 to 4.5 kb. Telomeres were significantly shorter in pot1-2 than in wild-type or even pot1-1. Short telomeres-D. Shippen-2007 FUNCTION: Component of the telomerase ribonucleoprotein (RNP) complex that is essential for positive telomere length regulation. Binds specifically the telomerase RNA template component TER1. Does not bind single-stranded telomeric DNA. Not required to recruit telomerase to telomeres, but stimulates TER1 RNP repeat addition processivity (PubMed:25329641). {ECO:0000269|PubMed:16107718, ECO:0000269|PubMed:17627276, ECO:0000269|PubMed:19228335, ECO:0000269|PubMed:21164032, ECO:0000269|PubMed:25329641}.,FUNCTION: Negatively regulates telomerase activity and participate in telomere end-protection. Does not bind single-stranded telomeric DNA. {ECO:0000269|PubMed:16107718, ECO:0000269|PubMed:19228335, ECO:0000269|PubMed:21164032}. 53923,16333,52572,14192 Protection of telomeres protein 1a (AtPOT1a) (Protection of telomeres protein 1),Protection of telomeres protein 1c (AtPOT1c) (Protection of telomeres protein 3),Protection of telomeres protein 1b (AtPOT1b) (Protection of telomeres protein 2),Nucleic acid-binding, OB-fold-like protein nuclear telomere cap complex [GO:0000783]; G-rich strand telomeric DNA binding [GO:0098505]; RNA binding [GO:0003723]; single-stranded telomeric DNA binding [GO:0043047]; telomerase inhibitor activity [GO:0010521]; telomeric DNA binding [GO:0042162]; negative regulation of telomerase activity [GO:0051974]; positive regulation of telomere maintenance [GO:0032206]; positive regulation of telomere maintenance via telomerase [GO:0032212]; telomere capping [GO:0016233]; telomere maintenance [GO:0000723],nuclear telomere cap complex [GO:0000783]; G-rich strand telomeric DNA binding [GO:0098505]; telomerase inhibitor activity [GO:0010521]; negative regulation of telomerase activity [GO:0051974]; regulation of telomere maintenance via telomerase [GO:0032210]; telomere capping [GO:0016233],nuclear telomere cap complex [GO:0000783]; G-rich strand telomeric DNA binding [GO:0098505]; RNA binding [GO:0003723]; single-stranded telomeric DNA binding [GO:0043047]; telomerase inhibitor activity [GO:0010521]; negative regulation of telomerase activity [GO:0051974]; regulation of telomere maintenance via telomerase [GO:0032210]; telomere capping [GO:0016233]; telomere maintenance [GO:0000723],nuclear chromosome, telomeric region [GO:0000784]; single-stranded telomeric DNA binding [GO:0043047]; telomere maintenance [GO:0000723] TISSUE SPECIFICITY: Ubiquitously expressed at low levels. {ECO:0000269|PubMed:16107718}. locus:2051214;,locus:2164295; AT2G05210,AT2G04395,AT5G06310 Protection of Telomeres Os04g0467800 protein A0A0N7KJ73 A0A0N7KJ73_ORYSJ Os04g0467800 OSNPB_040467800 ENOG411DW3A Q9C590 Q9C590_ARATH Expressed protein (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At5g21970) 52979 Expressed protein (Ubiquitin carboxyl-terminal hydrolase family protein) (Uncharacterized protein At5g21970) hydrolase activity [GO:0016787] locus:504956436; AT5G21970 Plant organelle RNA recognition domain Os11g0544300 protein (cDNA, clone: J090050G05, full insert sequence),Os03g0181400 protein (Fragment) B7F9N5,A0A0N7KGP9 B7F9N5_ORYSJ,A0A0N7KGP9_ORYSJ Os11g0544300 OSNPB_110544300,Os03g0181400 OSNPB_030181400 ENOG411DW3F PCMP-E87 Q9SS97 PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580 74320 Putative pentatricopeptide repeat-containing protein At3g01580 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2084188; AT3G01580 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DW3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oxidoreductase aldo keto reductase family protein Os04g0447700 protein (cDNA clone:002-137-F08, full insert sequence),OSJNBa0064H22.4 protein (Os04g0447600 protein) Q0JCV5,Q7XV16 Q0JCV5_ORYSJ,Q7XV16_ORYSJ Os04g0447700 Os04g0447700 OSNPB_040447700,Os04g0447600 Os04g0447600 OSJNBa0064H22.4 OSNPB_040447600 ENOG411DW3D Q93VR3 GME_ARATH GDP-mannose 3,5-epimerase (GDP-Man 3,5-epimerase) (EC 5.1.3.18) FUNCTION: Catalyzes a reversible epimerization of GDP-D-mannose that precedes the committed step in the biosynthesis of vitamin C (L-ascorbate), resulting in the hydrolysis of the highly energetic glycosyl-pyrophosphoryl linkage. Able to catalyze 2 distinct epimerization reactions and can release both GDP-L-galactose and GDP-L-gulose from GDP-mannose. {ECO:0000269|PubMed:12954627}. PATHWAY: Cofactor biosynthesis; L-ascorbate biosynthesis via GDP-alpha-D-mannose pathway; L-ascorbate from GDP-alpha-D-mannose: step 1/5. {ECO:0000269|PubMed:9620799}. ARA:AT5G28840-MONOMER;MetaCyc:AT5G28840-MONOMER; 5.1.3.18; Biosynthesis of secondary metabolites (01110),Ascorbate and aldarate metabolism (00053),Amino sugar and nucleotide sugar metabolism (00520),Metabolic pathways (01100) 5.1.3.18 42758 GDP-mannose 3,5-epimerase (GDP-Man 3,5-epimerase) (EC 5.1.3.18) cytosol [GO:0005829]; GDP-mannose 3,5-epimerase activity [GO:0047918]; NAD binding [GO:0051287]; L-ascorbic acid biosynthetic process [GO:0019853] locus:2150441; AT5G28840 GDP-mannose 35-epimerase GDP-mannose 3,5-epimerase 1 (GDP-Man 3,5-epimerase 1) (EC 5.1.3.18) (OsGME-1),GDP-mannose 3,5-epimerase 2 (GDP-Man 3,5-epimerase 2) (EC 5.1.3.18) A3C4S4,Q2R1V8 GME1_ORYSJ,GME2_ORYSJ GME-1 Os10g0417600 LOC_Os10g28200 OsJ_030296 OSJNBa0061K21.15,GME-2 Os11g0591100 LOC_Os11g37890 OsJ_34492 FUNCTION: Catalyzes a reversible epimerization of GDP-D-mannose that precedes the committed step in the biosynthesis of vitamin C (L-ascorbate), resulting in the hydrolysis of the highly energetic glycosyl-pyrophosphoryl linkage. Able to catalyze 2 distinct epimerization reactions and can release both GDP-L-galactose and GDP-L-gulose from GDP-mannose. {ECO:0000269|PubMed:16413588}.,FUNCTION: Catalyzes a reversible epimerization of GDP-D-mannose that precedes the committed step in the biosynthesis of vitamin C (L-ascorbate), resulting in the hydrolysis of the highly energetic glycosyl-pyrophosphoryl linkage. Able to catalyze 2 distinct epimerization reactions and can release both GDP-L-galactose and GDP-L-gulose from GDP-mannose (By similarity). {ECO:0000250}. ENOG411DW3E PCMP-E94 Q9LT48 PP244_ARATH Pentatricopeptide repeat-containing protein At3g20730 63115 Pentatricopeptide repeat-containing protein At3g20730 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT3G20730 Pentatricopeptide repeat-containing protein OSJNBa0089N06.5 protein (Os04g0628200 protein) (cDNA clone:J013134G11, full insert sequence) Q7XN77 Q7XN77_ORYSJ Os04g0628200 OSJNBa0089N06.5 OSNPB_040628200 ENOG411DW3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411DW3X Q9LM40 Q9LM40_ARATH AT1g18060/T10F20.23 (Microbial collagenase) (T10O22.3) (Uncharacterized protein At1g18060) 25198 AT1g18060/T10F20.23 (Microbial collagenase) (T10O22.3) (Uncharacterized protein At1g18060) chloroplast [GO:0009507] locus:2194120; AT1G18060 NA Os01g0120500 protein,Os01g0363500 protein (Fragment) Q9LGP4,A0A0P0V320,A0A0P0V2V0 Q9LGP4_ORYSJ,A0A0P0V320_ORYSJ,A0A0P0V2V0_ORYSJ Os01g0120500 OSNPB_010120500 P0684C01.2 P0698A04.34,Os01g0363500 OSNPB_010363500 ENOG411DW3Y ZIP1,ZIP5,ZIP3,ZIP12 O81123,O23039,Q9SLG3,Q9FIS2,F4I8P9 ZIP1_ARATH,ZIP5_ARATH,ZIP3_ARATH,ZIP12_ARATH,F4I8P9_ARATH Zinc transporter 1 (ZRT/IRT-like protein 1),Zinc transporter 5 (ZRT/IRT-like protein 5),Zinc transporter 3 (ZRT/IRT-like protein 3),Probable zinc transporter 12 (ZRT/IRT-like protein 12),Zinc transporter 5 FUNCTION: Mediates zinc uptake from the rhizosphere. May also transport copper and cadmium ions. {ECO:0000269|PubMed:9618566}.,FUNCTION: Probably mediates zinc uptake from the rhizosphere. {ECO:0000250}.,FUNCTION: Mediates zinc uptake from the rhizosphere. May also transport other divalent cations. {ECO:0000269|PubMed:9618566}.,FUNCTION: Zinc transporter involved in zinc uptake in roots. Targeted by BZIP23 transcription factor in response to zinc-deficient conditions. {ECO:0000269|PubMed:26306426}. MISCELLANEOUS: Zinc uptake is inhibited by copper and cadmium ions.,MISCELLANEOUS: Zinc uptake is inhibited by copper, cobalt, cadmium, iron and manganese ions. 37812,38167,36043,37571,28388 Zinc transporter 1 (ZRT/IRT-like protein 1),Zinc transporter 5 (ZRT/IRT-like protein 5),Zinc transporter 3 (ZRT/IRT-like protein 3),Probable zinc transporter 12 (ZRT/IRT-like protein 12),Zinc transporter 5 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385]; zinc II ion transmembrane transport [GO:0071577],integral component of membrane [GO:0016021]; zinc ion transmembrane transporter activity [GO:0005385] TISSUE SPECIFICITY: Expressed predominantly in the roots of zinc-deficient plants. locus:2087705;,locus:2207140;,locus:2062576;,locus:2174098; AT3G12750,AT1G05300,AT2G32270,AT5G62160 zinc transporter Zinc transporter 3 (ZRT/IRT-like protein 3) (OsZIP3),Zinc transporter 4 (ZRT/IRT-like protein 4) (OsZIP4),Zinc transporter 5 (ZRT/IRT-like protein 5) (OsZIP5),Zinc transporter 8 (ZRT/IRT-like protein 8) (OsZIP8),Zinc transporter 9 (ZRT/IRT-like protein 9) (OsZIP9),Os01g0576900 protein,Os05g0472400 protein (Fragment) Q7XLD4,Q6ZJ91,Q6L8G0,A3BI11,Q0DHE3,B9EXP2,A0A0P0WNQ3 ZIP3_ORYSJ,ZIP4_ORYSJ,ZIP5_ORYSJ,ZIP8_ORYSJ,ZIP9_ORYSJ,B9EXP2_ORYSJ,A0A0P0WNQ3_ORYSJ ZIP3 Os04g0613000 LOC_Os04g52310 OsJ_16134 OSJNBa0070C17.15,ZIP4 Os08g0207500 LOC_Os08g10630 OJ1734_E04.11,ZIP5 ZIP2 Os05g0472700 LOC_Os05g39560 P0015C02.14 P0486C01.1,ZIP8 ZIP1 Os07g0232800 LOC_Os07g12890 OsJ_23626 OSJNBa0061L20.103 OSJNBa0086N05.143,ZIP9 Os05g0472400 LOC_Os05g39540,Os01g0576900 OsJ_02324 OSNPB_010576900,Os05g0472400 OSNPB_050472400 DISRUPTION PHENOTYPE: No visible phenotype, but increased tolerance to an excess of zinc. {ECO:0000269|PubMed:20419467}. FUNCTION: Zinc transporter that may mediate zinc uptake from the rhizosphere. Seems specific to zinc ions and may not transport other divalent cations. {ECO:0000269|PubMed:12970480}.,FUNCTION: Zinc transporter that mediates zinc uptake from the rhizosphere and may be responsible for the translocation of zinc within the plant. {ECO:0000269|PubMed:16263903, ECO:0000269|PubMed:17630290}.,FUNCTION: Zinc transporter that mediates zinc uptake from the rhizosphere and may be responsible for the translocation of zinc within the plant. {ECO:0000269|PubMed:20419467}.,FUNCTION: Zinc transporter that may mediate zinc uptake from the rhizosphere and may be responsible for the translocation of zinc within the plant. {ECO:0000269|PubMed:20496122}.,FUNCTION: Zinc transporter that may be involved in zinc uptake from the rhizosphere. {ECO:0000250}. MISCELLANEOUS: Plants overexpressing ZIP4 show decreased zinc concentration in shoots and seeds, and increased concentration in roots.,MISCELLANEOUS: Plants overexpressing ZIP5 show decreased zinc concentration in shoots, increased concentration in roots, and are sensitive to an excess of zinc.,MISCELLANEOUS: Plants overexpressing ZIP8 show decreased zinc concentration in shoots and mature seeds, increased concentration in roots, and are shorter than wild-type plants when grown in field. ENOG411DW3R VIP1 Q9MA75 VIP1_ARATH Transcription factor VIP1 (Protein SULPHATE UTILIZATION EFFICIENCY 3) (VirE2-interacting protein 1) (AtVIP1) (bZIP transcription factor 51) (AtbZIP51) (bZIP protein 51) DISRUPTION PHENOTYPE: Enhanced low sulfur tolerance with higher rate of sulfate uptake at low sulfate levels. Improved tolerance to heavy metal (e.g. CdCl(2)) and oxidative stress (e.g. paraquat). {ECO:0000269|PubMed:20547563}. Resistant to limited sulfur, cadmium, and oxidative stress-C. Xiang-2010 FUNCTION: Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269|PubMed:11432846, ECO:0000269|PubMed:12124400, ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315, ECO:0000269|PubMed:17947581, ECO:0000269|PubMed:19820165, ECO:0000269|PubMed:20547563}. 37791 Transcription factor VIP1 (Protein SULPHATE UTILIZATION EFFICIENCY 3) (VirE2-interacting protein 1) (AtVIP1) (bZIP transcription factor 51) (AtbZIP51) (bZIP protein 51) cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; mitogen-activated protein kinase binding [GO:0051019]; nucleic acid binding [GO:0003676]; protein self-association [GO:0043621]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to sulfate starvation [GO:0009970]; defense response [GO:0006952]; DNA mediated transformation [GO:0009294]; negative regulation of cell differentiation [GO:0045596]; nuclear import [GO:0051170]; osmosensory signaling pathway [GO:0007231]; response to osmotic stress [GO:0006970]; sulfate transport [GO:0008272]; thigmotropism [GO:0009652]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in dividing cells, present in leaves, roots and seedlings. {ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315}. locus:2031123; AT1G43700 transcription factor BZIP transcriptional activator RSG, putative, expressed (Os12g0162500 protein),Os11g0160500 protein (cDNA clone:J013047E21, full insert sequence) Q2QXC3,B7EPB8 Q2QXC3_ORYSJ,B7EPB8_ORYSJ Os12g0162500 LOC_Os12g06520 Os12g0162500 OsJ_35315 OSNPB_120162500,Os11g0160500 OSNPB_110160500 ENOG411DW3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0732300 protein (Fragment) A0A0P0VP62 A0A0P0VP62_ORYSJ Os02g0732300 OSNPB_020732300 ENOG411DW3P PME67 Q9LSP1 PME67_ARATH Probable pectinesterase 67 (PE 67) (EC 3.1.1.11) (Pectin methylesterase 67) (AtPME67) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G17060-MONOMER; 3.1.1.11; 3.1.1.11 38812 Probable pectinesterase 67 (PE 67) (EC 3.1.1.11) (Pectin methylesterase 67) (AtPME67) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}. locus:2086037; AT3G17060 pectinesterase Os03g0309400 protein (Pectinesterase family protein, expressed) (cDNA clone:J023117F04, full insert sequence) Q10MG7 Q10MG7_ORYSJ LOC_Os03g19610 Os03g0309400 OSNPB_030309400 ENOG411DW3Q Q56Y76,A0A1P8AML9 Q56Y76_ARATH,A0A1P8AML9_ARATH Uncharacterized protein At1g50910,Uncharacterized protein 55716,39308 Uncharacterized protein At1g50910,Uncharacterized protein locus:2036436; AT1G50910 NA Os09g0504900 protein (cDNA clone:J013114B09, full insert sequence) Q0J0M9 Q0J0M9_ORYSJ Os09g0504900 Os09g0504900 OsJ_29925 OSNPB_090504900 ENOG411DW3V DGD1 Q9S7D1 DGDG1_ARATH Digalactosyldiacylglycerol synthase 1, chloroplastic (EC 2.4.1.241) DISRUPTION PHENOTYPE: Altered thylakoid membrane lipid composition and stunted phenotype. {ECO:0000269|PubMed:10381884}. Pale green seeds and seedlings-C. Benning-1995 FUNCTION: Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid membranes. Specific for alpha-glycosidic linkages (PubMed:10381884, PubMed:14600212). Responsible for the final assembly of galactolipids in photosynthetic membranes. Digalactosyldiacylglycerol (DGDG) provides stability to the photosystem I (PSI) complex, especially to the PsaA, PsaB, PsaC, PsaL and PsaH subunits (PubMed:15961080, PubMed:16854937). {ECO:0000269|PubMed:10381884, ECO:0000269|PubMed:14600212, ECO:0000269|PubMed:15961080, ECO:0000269|PubMed:16854937}. MetaCyc:AT3G11670-MONOMER; 2.4.1.241 91829 Digalactosyldiacylglycerol synthase 1, chloroplastic (EC 2.4.1.241) chloroplast outer membrane [GO:0009707]; mitochondrion [GO:0005739]; digalactosyldiacylglycerol synthase activity [GO:0046481]; transferase activity, transferring glycosyl groups [GO:0016757]; UDP-galactosyltransferase activity [GO:0035250]; galactolipid biosynthetic process [GO:0019375]; jasmonic acid mediated signaling pathway [GO:0009867]; lignin biosynthetic process [GO:0009809]; oxylipin biosynthetic process [GO:0031408]; photosystem I stabilization [GO:0042550] locus:2098333; AT3G11670 Digalactosyldiacylglycerol synthase Digalactosyldiacylglycerol synthase 1, putative, expressed (Os11g0158400 protein),Os02g0539100 protein (Putative digalactosyldiacylglycerol synthase) (cDNA clone:J013049P04, full insert sequence),Os04g0416900 protein (Fragment) Q2RAB0,Q6ER83,A0A0P0WAH3 Q2RAB0_ORYSJ,Q6ER83_ORYSJ,A0A0P0WAH3_ORYSJ Os11g0158400 LOC_Os11g05990 Os11g0158400 OSNPB_110158400,Os02g0539100 Os02g0539100 OSJNBa0014M17.23 OSNPB_020539100,Os04g0416900 OSNPB_040416900 ENOG411DW3W BHLH144 Q9ASX9 BH144_ARATH Transcription factor bHLH144 (Basic helix-loop-helix protein 144) (AtbHLH144) (bHLH 144) (Transcription factor EN 130) (bHLH transcription factor bHLH144) 27822 Transcription factor bHLH144 (Basic helix-loop-helix protein 144) (AtbHLH144) (bHLH 144) (Transcription factor EN 130) (bHLH transcription factor bHLH144) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2198253; AT1G29950 transcription factor Os02g0315600 protein (cDNA clone:002-118-A09, full insert sequence) (cDNA clone:002-120-C10, full insert sequence) (cDNA clone:J033103O07, full insert sequence),Helix-loop-helix DNA-binding domain containing protein, expressed (Os03g0591300 protein) (cDNA clone:J033061P20, full insert sequence),Os06g0267300 protein Q6Z861,Q10HE8,A0A0P0WVF6 Q6Z861_ORYSJ,Q10HE8_ORYSJ,A0A0P0WVF6_ORYSJ Os02g0315600 Os02g0315600 OsJ_06445 OSNPB_020315600 P0572D06.2,Os03g0591300 LOC_Os03g39432 OsJ_11606 OSNPB_030591300,Os06g0267300 OSNPB_060267300 ENOG411DW3T Q5XVE4,A0A1P8B2J0,A0A1P8B2I4,B3H6D6 Q5XVE4_ARATH,A0A1P8B2J0_ARATH,A0A1P8B2I4_ARATH,B3H6D6_ARATH Serine/Threonine-kinase 32490,35279,29131,29402 Serine/Threonine-kinase kinase activity [GO:0016301] locus:504955990; AT2G20495 serine threonine-protein kinase Os07g0458800 protein (cDNA clone:J033045J20, full insert sequence) B7F4A9 B7F4A9_ORYSJ Os07g0458800 OSNPB_070458800 ENOG411DW3U F4J152 F4J152_ARATH Uncharacterized protein 59122 Uncharacterized protein plasma membrane [GO:0005886] locus:2096434; AT3G03560 NA Expressed protein (Os03g0707300 protein) Q10E61 Q10E61_ORYSJ Os03g0707300 LOC_Os03g49960 Os03g0707300 OSNPB_030707300 ENOG411DVPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Protein disulfide isomerase-like 1-2 (OsPDIL1-2) (EC 5.3.4.1),Os04g0436300 protein Q7XRB5,A0A0P0WAJ0 PDI12_ORYSJ,A0A0P0WAJ0_ORYSJ PDIL1-2 Os04g0436300 LOC_Os04g35600 OSJNBa0006B20.4,Os04g0436300 OSNPB_040436300 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411E55D O49637,Q8GYJ0 O49637_ARATH,Q8GYJ0_ARATH Golgin family A protein (Uncharacterized protein AT4g22320),Golgin family A protein (Uncharacterized protein At4g22320) (Uncharacterized protein At4g22320/T10I14_150) 26156,26284 Golgin family A protein (Uncharacterized protein AT4g22320),Golgin family A protein (Uncharacterized protein At4g22320) (Uncharacterized protein At4g22320/T10I14_150) locus:2132105; AT4G22320 NA Os08g0338600 protein (Fragment) A0A0P0XF63 A0A0P0XF63_ORYSJ Os08g0338600 OSNPB_080338600 ENOG411DVP0 RABD1 Q9ZRE2 RABD1_ARATH Ras-related protein RABD1 (AtRABD1) (Ras-related protein ATFP8) FUNCTION: Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). R-ATH-204005;R-ATH-6807878;R-ATH-6811434;R-ATH-8873719;R-ATH-8876198; 22725 Ras-related protein RABD1 (AtRABD1) (Ras-related protein ATFP8) Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; trans-Golgi network membrane [GO:0032588]; GTP binding [GO:0005525]; GTP-dependent protein binding [GO:0030742]; GTPase activity [GO:0003924]; myosin XI tail binding [GO:0080115]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031] locus:2081486; AT3G11730 ras-related protein Os05g0105200 protein (Fragment) Q0DLF0 Q0DLF0_ORYSJ Os05g0105200 Os05g0105200 OSNPB_050105200 ENOG411EJJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ty3-gypsy subclass Os11g0467632 protein A0A0P0Y2L8 A0A0P0Y2L8_ORYSJ Os11g0467632 OSNPB_110467632 ENOG411EJJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EJJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE801 protein (Os08g0438701 protein) A3BTH6 A3BTH6_ORYSJ Os08g0438701 OsCLE801 OsJ_27459 OSNPB_080438701 ENOG411EJJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCP NA NA NA NA NA NA NA ENOG411EJJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os02g0188900 protein A0A0P0VFW1 A0A0P0VFW1_ORYSJ Os02g0188900 OSNPB_020188900 ENOG411EJJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD NA NA NA NA NA NA NA ENOG411EJJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E4QD Q84VV1 Q84VV1_ARATH At5g41270 (RNase P Rpr2/Rpp21 subunit domain protein) (Uncharacterized protein At5g41270) 28943 At5g41270 (RNase P Rpr2/Rpp21 subunit domain protein) (Uncharacterized protein At5g41270) locus:2155120; AT5G41270 RNAse P Rpr2/Rpp21/SNM1 subunit domain Os01g0541600 protein,Os01g0531000 protein (Fragment) Q5JJY7,A0A0P0V3J0 Q5JJY7_ORYSJ,A0A0P0V3J0_ORYSJ Os01g0541600 Os01g0541600 OsJ_02133 OSJNBa0047D12.47 OSJNBa0062A24.4 OSNPB_010541600,Os01g0531000 OSNPB_010531000 ENOG411E4QE F4J1K4,A0A1I9LT01 F4J1K4_ARATH,A0A1I9LT01_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 12208,11761 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein AT3G22570 Non-specific lipid-transfer protein-like protein Os03g0793800 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (Putative protease inhibitor) (cDNA clone:001-003-E04, full insert sequence),Os07g0174900 protein (Protease inhibitor-like protein),Os07g0174400 protein Q852L3,Q8H574,C7J4T1 Q852L3_ORYSJ,Q8H574_ORYSJ,C7J4T1_ORYSJ OSJNBb0060J21.9 LOC_Os03g57970 Os03g0793800 OsJ_12926 OSNPB_030793800,OJ1656_E11.129 Os07g0174900 OsJ_23283 OSNPB_070174900,Os07g0174400 Os07g0174400 OSNPB_070174400 ENOG411E4QB SRC2 O04023 SRC2_ARATH Protein SRC2 homolog (AtSRC2) FUNCTION: May act as an activator of the calcium-dependent activation of RBOHF that mediates reactive oxygene species (ROS) production and may play a role in cold responses. {ECO:0000269|PubMed:23872431}. 34189 Protein SRC2 homolog (AtSRC2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein storage vacuole [GO:0000326]; protein storage vacuole membrane [GO:0032586]; protein targeting to vacuole [GO:0006623] locus:2036004; AT1G09070 C2 domain NA NA NA NA NA NA NA ENOG411E4QC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY Cysteine proteinase inhibitor 2 (Oryzacystatin II) (OC-II) (Oryzacystatin-2),Cysteine proteinase inhibitor P20907,A0A0P0WNX0 CYT2_ORYSJ,A0A0P0WNX0_ORYSJ Os05g0494200 LOC_Os05g41460 OJ1579_G03.3 OsJ_19043,Os05g0494200 OSNPB_050494200 FUNCTION: There are two distinct cystatins in rice seeds (Oryzacystatin-1 and -2) with different specificities against cysteine proteinases. May be involved in the control of germination by inhibition of endogenous cysteine proteinases. May play a role in defense by inhibiting exogenous proteases such as those present in digestive tracks of insects and nematodes. {ECO:0000269|PubMed:1697595}. ENOG411E4Q4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF724) Os01g0556800 protein A0A0P0V413 A0A0P0V413_ORYSJ Os01g0556800 OSNPB_010556800 ENOG411E4Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Expressed protein (Os10g0422800 protein) (cDNA clone:J023082F14, full insert sequence),Expressed protein (Os03g0160300 protein) Q337Z8,Q10RG2 Q337Z8_ORYSJ,Q10RG2_ORYSJ Os10g0422800 LOC_Os10g28700 OsJ_31568 OSNPB_100422800,LOC_Os03g06430 Os03g0160300 OsJ_09494 OSNPB_030160300 ENOG411E4Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4Q1 DAN1 Q9SR12 Q9SR12_ARATH Alba DNA/RNA-binding protein (At3g04620) (F7O18.10 protein) 17666 Alba DNA/RNA-binding protein (At3g04620) (F7O18.10 protein) nucleic acid binding [GO:0003676]; pollen sperm cell differentiation [GO:0048235] locus:2084873; AT3G04620 acid binding NA NA NA NA NA NA NA ENOG411EF33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SOUL heme-binding protein NA NA NA NA NA NA NA ENOG411E0F6 Q8LE94,Q9LFU7,Q94C65,A0A1P8BE16,A0A1P8AUA6,F4KCY7,A0A1I9LMP4,F4KCY6 RING3_ARATH,Q9LFU7_ARATH,Q94C65_ARATH,A0A1P8BE16_ARATH,A0A1P8AUA6_ARATH,F4KCY7_ARATH,A0A1I9LMP4_ARATH,F4KCY6_ARATH E3 ubiquitin-protein ligase At3g02290 (EC 2.3.2.27) (RING finger protein At3g02290) (RING-type E3 ubiquitin transferase At3g02290),At5g15790 (RING/U-box superfamily protein) (Uncharacterized protein At5g15790) (Uncharacterized protein F14F8_170),RING/U-box superfamily protein (Uncharacterized protein At5g38895),RING/U-box superfamily protein,E3 ubiquitin-protein ligase FUNCTION: Mediates E2-dependent protein ubiquitination. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 26258,26352,24517,29872,13697,33140,26970,38098 E3 ubiquitin-protein ligase At3g02290 (EC 2.3.2.27) (RING finger protein At3g02290) (RING-type E3 ubiquitin transferase At3g02290),At5g15790 (RING/U-box superfamily protein) (Uncharacterized protein At5g15790) (Uncharacterized protein F14F8_170),RING/U-box superfamily protein (Uncharacterized protein At5g38895),RING/U-box superfamily protein,E3 ubiquitin-protein ligase cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],ligase activity [GO:0016874],zinc ion binding [GO:0008270],ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to chitin [GO:0010200] locus:2076542;,locus:2143251;,locus:505006664; AT3G02290,AT5G15790,AT5G38895 E3 ubiquitin-protein ligase Os11g0629300 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J013113A03, full insert sequence),Os01g0926200 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:J033050H01, full insert sequence) Q2R0W9,Q5JK23 Q2R0W9_ORYSJ,Q5JK23_ORYSJ Os11g0629300 LOC_Os11g41140 Os11g0629300 OSNPB_110629300,Os01g0926200 OsJ_04613 OSJNBa0093F16.13-1 OSNPB_010926200 ENOG411DVYU CYP74A Q96242 CP74A_ARATH Allene oxide synthase, chloroplastic (EC 4.2.1.92) (Cytochrome P450 74A) (Hydroperoxide dehydrase) aos (GL1) single mutant was generated by backcrossing the original aos to Col-0. aos (GL1) single mutant leaves produce fewer trichomes than wild-type (ca. 30% reduction). Morphology and branching number of aos (GL1) trichomes are normal. aos (GL1) does not increase leaf trichome density in response to wound treatment. Male sterile-R. Feyereisen-2002 PATHWAY: Lipid metabolism; oxylipin biosynthesis. {ECO:0000305}. MetaCyc:MONOMER-1582; 4.2.1.92; 4.2.1.92 58197 Allene oxide synthase, chloroplastic (EC 4.2.1.92) (Cytochrome P450 74A) (Hydroperoxide dehydrase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; allene oxide synthase activity [GO:0009978]; heme binding [GO:0020037]; hydroperoxide dehydratase activity [GO:0047987]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; oxygen binding [GO:0019825]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; epoxygenase P450 pathway [GO:0019373]; jasmonic acid biosynthetic process [GO:0009695]; oxylipin biosynthetic process [GO:0031408]; oxylipin metabolic process [GO:0031407]; response to fungus [GO:0009620]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; sterol metabolic process [GO:0016125] locus:2165452; AT5G42650 Allene oxide synthase Allene oxide synthase 2 (EC 4.2.1.92) (Cytochrome P450 74A2) (Hydroperoxide dehydrase 2),Allene oxide synthase 1, chloroplastic (EC 4.2.1.92) (Cytochrome P450 74A1) (Hydroperoxide dehydrase 1) Q7XYS3,Q7Y0C8 C74A2_ORYSJ,C74A1_ORYSJ CYP74A2 AOS2 Os03g0225900 LOC_Os03g12500 OSJNBa0081P02.18,CYP74A1 AOS1 Os03g0767000 LOC_Os03g55800 OSJNBa0079B15.7 OSJNBb0106M04.24 FUNCTION: Involved in the biosynthesis of jasmonic acid, a growth regulator that is implicated also as a signaling molecule in plant defense. Converts 13-hydroperoxylinolenic acid to 12,13-epoxylinolenic acid. {ECO:0000269|PubMed:12596875}.,FUNCTION: Involved in the biosynthesis of jasmonic acid, a growth regulator that is implicated also as a signaling molecule in plant defense. Converts 13-hydroperoxylinolenic acid to 12,13-epoxylinolenic acid (By similarity). {ECO:0000250}. ENOG411DU90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter OSJNBa0027G07.5 protein (Os04g0453200 protein) Q7XUX7 Q7XUX7_ORYSJ Os04g0453200 OSJNBa0027G07.5 OSNPB_040453200 ENOG411E7BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein NEGATIVE REGULATOR OF RESISTANCE (NPR1-interactor) Q5ZEF1 NRR_ORYSJ NRR Os01g0130200 LOC_Os01g03940 P0408F06.32 P0504H10.7 FUNCTION: Acts as negative regulator of disease resitance. Acts on basal resistance, age-related resistance and resistance mediated by the LRR receptor kinase XA21. Plants over-expressing NRR display enhanced susceptibility to the bacterial blight Xanthomonas oryzae pv. oryzae (Xoo) (PubMed:16115061). Binds to and represses NPR1/NH1-mediated transcriptional activation of LG2 in vitro (PubMed:22353606). {ECO:0000269|PubMed:16115061, ECO:0000269|PubMed:22353606}. ENOG411E7BP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os05g0491700 protein Q0DH48 Q0DH48_ORYSJ Os05g0491700 Os05g0491700 OsJ_19029 OSNPB_050491700 ENOG411E7BQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0542732 protein,Os01g0704901 protein A0A0P0WQC3,A0A0P0V731 A0A0P0WQC3_ORYSJ,A0A0P0V731_ORYSJ Os05g0542732 OSNPB_050542732,Os01g0704901 OSNPB_010704901 ENOG411E7BV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0323400 protein Q5W6D4 Q5W6D4_ORYSJ Os05g0323400 Os05g0323400 OSJNBb0109A13.11 OSNPB_050323400 P0018A03.3 ENOG411E7BZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7BX Q8GSD7,Q8L7W6,F4IYM6 Q8GSD7_ARATH,Q8L7W6_ARATH,F4IYM6_ARATH mRNA capping enzyme family protein (mRNA capping enzyme-like protein),AT3g09100/MZB10_13 (mRNA capping enzyme family protein),mRNA capping enzyme family protein R-ATH-72086;R-ATH-77075; 77069,54577,78761 mRNA capping enzyme family protein (mRNA capping enzyme-like protein),AT3g09100/MZB10_13 (mRNA capping enzyme family protein),mRNA capping enzyme family protein nucleus [GO:0005634]; mRNA guanylyltransferase activity [GO:0004484]; polynucleotide 5'-phosphatase activity [GO:0004651]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; 7-methylguanosine mRNA capping [GO:0006370],nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; DNA ligase (ATP) activity [GO:0003910]; mRNA guanylyltransferase activity [GO:0004484]; polynucleotide 5'-phosphatase activity [GO:0004651]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; 7-methylguanosine mRNA capping [GO:0006370]; DNA recombination [GO:0006310]; DNA repair [GO:0006281] locus:2150154;,locus:2095284; AT5G01290,AT3G09100 mRNA capping enzyme catalytic domain NA NA NA NA NA NA NA ENOG411E7BY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os01g0256500 protein (Zinc inducible protein) (Zinc inducible protein-like) Q1EHU2 Q1EHU2_ORYSJ Os01g0256500 OSNPB_010256500 P0711E10.36 ENOG411E7BB T15N1_180 Q9LYJ1,Q6NLE5 Q9LYJ1_ARATH,Q6NLE5_ARATH At5g14690 (Transmembrane protein) (Uncharacterized protein At5g14690) (Uncharacterized protein T15N1_180),At3g01516 (Transmembrane protein) 24646,21020 At5g14690 (Transmembrane protein) (Uncharacterized protein At5g14690) (Uncharacterized protein T15N1_180),At3g01516 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2222692;,locus:504955812; AT5G14690,AT3G01516 NA NA NA NA NA NA NA NA ENOG411E7BA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0631800 protein (cDNA clone:J023019C22, full insert sequence) Q8RZJ7 Q8RZJ7_ORYSJ Os01g0631800 B1158C05.14 OsJ_02713 OSNPB_010631800 ENOG411E7BD RALFL19,RALFL4 Q6NME6,Q9FZA0 RLF19_ARATH,RLF4_ARATH Protein RALF-like 19,Protein RALF-like 4 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 12397,12662 Protein RALF-like 19,Protein RALF-like 4 apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] locus:504955964;,locus:2032195; AT2G33775,AT1G28270 Cell signaling peptide that may regulate plant stress growth and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2 ) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity) Os05g0203000 protein A0A0P0WJ24 A0A0P0WJ24_ORYSJ Os05g0203000 OSNPB_050203000 ENOG411E7BJ Q9LJQ3,A0A1I9LP30 Q9LJQ3_ARATH,A0A1I9LP30_ARATH AT3g18280/MIE15_7 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Lipid transfer protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 10275,13112 AT3g18280/MIE15_7 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Lipid transfer protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein lipid transport [GO:0006869] locus:2089673; AT3G18280 nonspecific lipid-transfer protein Os05g0550300 protein (Putative lipid transfer protein) (cDNA clone:001-103-D11, full insert sequence) Q6L4H1 Q6L4H1_ORYSJ P0560C03.5 Os05g0550300 OSNPB_050550300 ENOG411E7BK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0733900 protein (cDNA clone:002-181-F02, full insert sequence) Q6Z2I6 Q6Z2I6_ORYSJ Os02g0733900 Os02g0733900 OsJ_08285 OSNPB_020733900 P0643A10.41 ENOG411E7BH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family Os01g0587500 protein C7IY02 C7IY02_ORYSJ Os01g0587500 Os01g0587500 OSNPB_010587500 ENOG411E7BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: late embryogenesis abundant NA NA NA NA NA NA NA ENOG411E7BN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7B2 Q9FZ89 Y1815_ARATH UPF0426 protein At1g28150, chloroplastic 13582 UPF0426 protein At1g28150, chloroplastic plastoglobule [GO:0010287] locus:2010514; AT1G28150 UPF0426 protein OSJNBa0038O10.25 protein (OSJNBa0074L08.1 protein) (Os04g0528100 protein) (cDNA clone:J013044D08, full insert sequence) Q7XKI3 Q7XKI3_ORYSJ Os04g0528100 Os04g0528100 OsJ_15542 OSJNBa0038O10.25 OSJNBa0074L08.1 OSNPB_040528100 ENOG411E7B3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone H1 NA NA NA NA NA NA NA ENOG411E7B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger Os11g0142800 protein (Zinc finger, C3HC4 type family protein),Os12g0140700 protein (Zinc finger, C3HC4 type family protein, expressed),Os12g0139100 protein (Zinc finger, C3HC4 type family protein),Os12g0140200 protein (Os12g0140233 protein) (Zinc finger, C3HC4 type family protein, expressed),Os11g0142900 protein,Os12g0142850 protein,Os12g0139201 protein Q2RAP6,Q2QXW7,Q2QXY7,Q2QXX4,A0A0P0XYN2,A0A0P0Y6W6,A0A0P0Y731 Q2RAP6_ORYSJ,Q2QXW7_ORYSJ,Q2QXY7_ORYSJ,Q2QXX4_ORYSJ,A0A0P0XYN2_ORYSJ,A0A0P0Y6W6_ORYSJ,A0A0P0Y731_ORYSJ Os11g0142800 LOC_Os11g04690 OsJ_32927 OSNPB_110142800,LOC_Os12g04660 Os12g0140700 OsJ_35183 OSNPB_120140700,Os12g0139100 LOC_Os12g04460 OSNPB_120139100,Os12g0140200 LOC_Os12g04590 Os12g0140233 OsJ_31088 OSNPB_120140200,Os11g0142900 OSNPB_110142900,Os12g0142850 OSNPB_120142850,Os12g0139201 OSNPB_120139201 ENOG411E7B1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE402 protein (FON2-like CLE protein 1) (Os04g0473800 protein) A8R3N9 A8R3N9_ORYSJ OsCLE402 FCP1 Os04g0473800 OsJ_15161 OSNPB_040473800 ENOG411E7B6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0826800 protein) (cDNA clone:002-174-G12, full insert sequence) Q94GF4 Q94GF4_ORYSJ OJ1111_B11.6 LOC_Os03g61150 Os03g0826800 OsJ_13200 OSJNBa0010E04.8 OSNPB_030826800 ENOG411E7B7 BHLH117 Q9LRJ4 BH117_ARATH Transcription factor bHLH117 (Basic helix-loop-helix protein 117) (AtbHLH117) (bHLH 117) (Transcription factor EN 140) (bHLH transcription factor bHLH117) 28341 Transcription factor bHLH117 (Basic helix-loop-helix protein 117) (AtbHLH117) (bHLH 117) (Transcription factor EN 140) (bHLH transcription factor bHLH117) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366] locus:2095612; AT3G22100 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E7B4 Q94A22 Q94A22_ARATH AT4g28240/F26K10_120 (Putative wound-induced protein) (Wound-responsive family protein) 9493 AT4g28240/F26K10_120 (Putative wound-induced protein) (Wound-responsive family protein) locus:2123633; AT4G28240 Wound-induced protein NA NA NA NA NA NA NA ENOG411E7B8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E7B9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3681) Os01g0147100 protein A2ZP80 A2ZP80_ORYSJ Os01g0147100 OsJ_00359 OSNPB_010147100 ENOG411E0FB FUM2,FUM1 Q9FI53,P93033,A0A1P8BDR1,B3H477 FUM2_ARATH,FUM1_ARATH,A0A1P8BDR1_ARATH,B3H477_ARATH Fumarate hydratase 2, chloroplastic (Fumarase 2) (EC 4.2.1.2),Fumarate hydratase 1, mitochondrial (Fumarase 1) (EC 4.2.1.2),FUMARASE 2 Low fumarate levels; Low amino acid levels in the daytime; Elevated amino acid levels at night-S. Smith-2010,Male and female gametophyte defective; Embryo defective (inferred)-S. McCormick-2009 MISCELLANEOUS: There are 2 substrate-binding sites: the catalytic A site, and the non-catalytic B site that may play a role in the transfer of substrate or product between the active site and the solvent. Alternatively, the B site may bind allosteric effectors (By similarity). {ECO:0000250}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; (S)-malate from fumarate: step 1/1. ARA:AT5G50950-MONOMER;MetaCyc:AT5G50950-MONOMER; R-ATH-71403; 4.2.1.2; 4.2.1.2 54084,53000,44230,33729 Fumarate hydratase 2, chloroplastic (Fumarase 2) (EC 4.2.1.2),Fumarate hydratase 1, mitochondrial (Fumarase 1) (EC 4.2.1.2),FUMARASE 2 chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; tricarboxylic acid cycle enzyme complex [GO:0045239]; fumarate hydratase activity [GO:0004333]; cold acclimation [GO:0009631]; fumarate metabolic process [GO:0006106]; malate metabolic process [GO:0006108]; nitrate assimilation [GO:0042128]; regulation of photosynthesis [GO:0010109]; response to salt stress [GO:0009651]; tricarboxylic acid cycle [GO:0006099],mitochondrion [GO:0005739]; tricarboxylic acid cycle enzyme complex [GO:0045239]; fumarate hydratase activity [GO:0004333]; fumarate metabolic process [GO:0006106]; malate metabolic process [GO:0006108]; pollen tube development [GO:0048868]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; tricarboxylic acid cycle [GO:0006099],tricarboxylic acid cycle enzyme complex [GO:0045239]; fumarate hydratase activity [GO:0004333]; fumarate metabolic process [GO:0006106],tricarboxylic acid cycle enzyme complex [GO:0045239]; fumarate hydratase activity [GO:0004333]; fumarate metabolic process [GO:0006106]; tricarboxylic acid cycle [GO:0006099] locus:2157413;,locus:2061966; AT5G50950,AT2G47510 Fumarate hydratase Fumarate hydratase 1, mitochondrial, putative, expressed (Os03g0337900 protein) (cDNA, clone: J100075P16, full insert sequence) Q10LR5 Q10LR5_ORYSJ Os03g0337900 LOC_Os03g21950 OSNPB_030337900 ENOG411DZ3N MUL3.6 Q9LU74,A0A1R7T3I7 Q9LU74_ARATH,A0A1R7T3I7_ARATH AT5g57120/MUL3_6 (Nucleolar/coiled-body phosphoprotein),Nucleolar/coiled-body phosphoprotein 37582,34126 AT5g57120/MUL3_6 (Nucleolar/coiled-body phosphoprotein),Nucleolar/coiled-body phosphoprotein nucleolus [GO:0005730] locus:2175584; AT5G57120 SRP40 C-terminal domain Os12g0613500 protein (SRP40, C-terminal domain containing protein, expressed) (cDNA clone:J033033A11, full insert sequence),Os12g0613500 protein (Fragment) Q2QM87,A0A0P0YCE5 Q2QM87_ORYSJ,A0A0P0YCE5_ORYSJ LOC_Os12g41930 Os12g0613500 OSNPB_120613500,Os12g0613500 OSNPB_120613500 ENOG411DZ3Z LAG1 Q6NQI8,Q9LDF2,A0A1I9LTU4 LAG13_ARATH,LAG11_ARATH,A0A1I9LTU4_ARATH LAG1 longevity assurance homolog 3 (LAG1 homolog 3),LAG1 longevity assurance homolog 1 (LAG1 homolog 1),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein FUNCTION: Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis. Could salvage the transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi apparatus in ceramides-depleted cells after SAM exposure (By similarity). {ECO:0000250}. 36549,36498,28295 LAG1 longevity assurance homolog 3 (LAG1 homolog 3),LAG1 longevity assurance homolog 1 (LAG1 homolog 1),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; sphingosine N-acyltransferase activity [GO:0050291]; ceramide biosynthetic process [GO:0046513]; very long-chain fatty acid biosynthetic process [GO:0042761],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; sphingosine N-acyltransferase activity [GO:0050291]; ceramide biosynthetic process [GO:0046513]; very long-chain fatty acid biosynthetic process [GO:0042761],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2010022;,locus:2094528; AT1G13580,AT3G25540 Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis. Could salvage the transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi apparatus in ceramides-depleted cells after SAM exposure (By similarity) ASC1-like protein 2 (Alternaria stem canker resistance-like protein 2),ASC1-like protein 1 (Alternaria stem canker resistance-like protein 1),Os02g0728300 protein (Fragment),Os09g0372700 protein Q6YWS8,Q6EUN0,A0A0P0VP27,A0A0P0XKV3 ASCL2_ORYSJ,ASCL1_ORYSJ,A0A0P0VP27_ORYSJ,A0A0P0XKV3_ORYSJ Os02g0728300 LOC_Os02g49590 B1121A12.39 OSJNBa0072H09.2,Os02g0581300 LOC_Os02g37080 OJ1115_A05.19,Os02g0728300 OSNPB_020728300,Os09g0372700 OSNPB_090372700 FUNCTION: Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis. Could salvage the transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi apparatus in ceramides-depleted cells after SAM exposure (By similarity). {ECO:0000250}. ENOG411DZ3X Q9ZV08,Q0WQ36,A0A1P8B2A1,F4IUU9 Q9ZV08_ARATH,Q0WQ36_ARATH,A0A1P8B2A1_ARATH,F4IUU9_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (At2g39000) (Uncharacterized protein At2g39000),Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At2g39000),Acyl-CoA N-acyltransferases (NAT) superfamily protein 32166,25015,22844,26117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (At2g39000) (Uncharacterized protein At2g39000),Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At2g39000),Acyl-CoA N-acyltransferases (NAT) superfamily protein chloroplast [GO:0009507]; cytosolic ribosome [GO:0022626]; NatA complex [GO:0031415]; N-acetyltransferase activity [GO:0008080]; peptide-glutamate-N-acetyltransferase activity [GO:1990190]; peptide-serine-N-acetyltransferase activity [GO:1990189]; internal protein amino acid acetylation [GO:0006475]; N-terminal peptidyl-glutamic acid acetylation [GO:0018002]; N-terminal peptidyl-serine acetylation [GO:0017198]; N-terminal protein amino acid acetylation [GO:0006474],transferase activity, transferring acyl groups [GO:0016746],N-acetyltransferase activity [GO:0008080] locus:2064986; AT2G39000 Acetyltransferase (GNAT) family GCN5-related N-acetyltransferase (GNAT) family protein-like (Os02g0806000 protein),Os02g0806000 protein (Fragment) Q6K836,A0A0P0VR46 Q6K836_ORYSJ,A0A0P0VR46_ORYSJ OJ1548_F12.27-1 Os02g0806000 OJ1111_C07.5-1 OsJ_08786 OSNPB_020806000,Os02g0806000 OSNPB_020806000 ENOG411DZ3V Q8GWG6 Q8GWG6_ARATH S3 self-incompatibility locus-linked pollen protein (Uncharacterized protein At1g61000/T7P1_14) 71729 S3 self-incompatibility locus-linked pollen protein (Uncharacterized protein At1g61000/T7P1_14) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:4010713572; AT1G60995 Tumour-associated protein Expressed protein (Os03g0659900 protein) (S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed),Os03g0659900 protein (Fragment) Q75GP2,A0A0P0W1K7 Q75GP2_ORYSJ,A0A0P0W1K7_ORYSJ OSJNBb0065L20.21 LOC_Os03g45770 Os03g0659900 OSNPB_030659900,Os03g0659900 OSNPB_030659900 ENOG411DZ34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Hexose carrier protein HEX6, putative, expressed (Os03g0101300 protein) (cDNA clone:J023037O19, full insert sequence),Hexose carrier protein HEX6, putative, expressed (Os10g0561300 protein) (Putative hexose carrier protein) (Putative monosaccharide transporter) (cDNA clone:J013148F21, full insert sequence) Q10T50,Q9AUT4 Q10T50_ORYSJ,Q9AUT4_ORYSJ Os03g0101300 LOC_Os03g01170 Os03g0101300 OsJ_09056 OSNPB_030101300,OSJNBb0089A17.11 OSJNBa0042H09.10 LOC_Os10g41190 Os10g0561300 OsJ_32460 OSNPB_100561300 ENOG411EICB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EICG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EICK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0509400 protein (Fragment) A0A0P0V369 A0A0P0V369_ORYSJ Os01g0509400 OSNPB_010509400 ENOG411EICI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EICQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Wall-associated receptor kinase NA NA NA NA NA NA NA ENOG411EICV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E37Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyprenyl synthetase NA NA NA NA NA NA NA ENOG411EIC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIC6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus NA NA NA NA NA NA NA ENOG411EIC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1070) NA NA NA NA NA NA NA ENOG411E37S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os02g0265800 protein A3A5B9 A3A5B9_ORYSJ Os02g0265800 OsJ_06172 OSNPB_020265800 ENOG411E65M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: epimerase dehydratase NA NA NA NA NA NA NA ENOG411DZBZ ABCF1 Q9FJH6 AB1F_ARATH ABC transporter F family member 1 (ABC transporter ABCF.1) (AtABCF1) (GCN20-type ATP-binding cassette protein GCN1) 66886 ABC transporter F family member 1 (ABC transporter ABCF.1) (AtABCF1) (GCN20-type ATP-binding cassette protein GCN1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] locus:2159300; AT5G60790 ABC transporter F family member Os09g0572400 protein (Putative iron inhibited ABC transporter 2),Os08g0564100 protein (Putative iron inhibited ABC transporter 2) (cDNA clone:001-113-A02, full insert sequence) Q650Z9,Q84ZB2 Q650Z9_ORYSJ,Q84ZB2_ORYSJ Os09g0572400 Os09g0572400 B1130E07.4 B1331F11.24 OsJ_30438 OSNPB_090572400,P0705A05.111 Os08g0564100 OsJ_28306 OSNPB_080564100 P0543D10.42 ENOG411DZBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0210300 protein (cDNA clone:002-119-C11, full insert sequence) Q0JPP8 Q0JPP8_ORYSJ Os01g0210300 Os01g0210300 OSNPB_010210300 ENOG411DZBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-box protein Os04g0414500 protein,F-box protein-like (Os02g0535901 protein) Q0JDB9,Q6EPW3 Q0JDB9_ORYSJ,Q6EPW3_ORYSJ Os04g0414500 Os04g0414500 OSNPB_040414500,Os02g0535901 B1136H02.33 OJ1112_G07.20 OsJ_07024 OSNPB_020535901 ENOG411DZBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Probable potassium transporter 3 (OsHAK3),Potassium transporter (Fragment) Q5ZC87,A0A0N7KCZ1,A0A0P0V2I3 HAK3_ORYSJ,A0A0N7KCZ1_ORYSJ,A0A0P0V2I3_ORYSJ HAK3 Os01g0369300 LOC_Os01g27170 P0043B10.36 P0560B06.33,Os01g0369300 OSNPB_010369300 FUNCTION: High-affinity potassium transporter. {ECO:0000250}.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. ENOG411DZBC MAN2,MAN5 Q7Y223,Q9M0H6 MAN2_ARATH,MAN5_ARATH Mannan endo-1,4-beta-mannosidase 2 (EC 3.2.1.78) (Beta-mannanase 2) (Endo-beta-1,4-mannanase 2) (AtMAN2),Mannan endo-1,4-beta-mannosidase 5 (EC 3.2.1.78) (Beta-mannanase 5) (Endo-beta-1,4-mannanase 5) (AtMAN5) Delayed germination-A. Matilla-2011 ARA:AT2G20680-MONOMER;,ARA:AT4G28320-MONOMER; 3.2.1.78; 3.2.1.78 49558,49899 Mannan endo-1,4-beta-mannosidase 2 (EC 3.2.1.78) (Beta-mannanase 2) (Endo-beta-1,4-mannanase 2) (AtMAN2),Mannan endo-1,4-beta-mannosidase 5 (EC 3.2.1.78) (Beta-mannanase 5) (Endo-beta-1,4-mannanase 5) (AtMAN5) extracellular region [GO:0005576]; mannan endo-1,4-beta-mannosidase activity [GO:0016985]; mannan catabolic process [GO:0046355]; mannan metabolic process [GO:0010412],extracellular region [GO:0005576]; mannan endo-1,4-beta-mannosidase activity [GO:0016985]; mannan catabolic process [GO:0046355]; seed germination [GO:0009845] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and seeds. {ECO:0000269|PubMed:16897088}.,TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:16897088}. locus:2051399;,locus:2123628; AT2G20680,AT4G28320 Mannan endo-14-beta-mannosidase Mannan endo-1,4-beta-mannosidase 2 (EC 3.2.1.78) (Beta-mannanase 2) (Endo-beta-1,4-mannanase 2) (OsMAN2) Q0JJD4 MAN2_ORYSJ MAN2 Os01g0746700 LOC_Os01g54300 OSJNBa0014K08.42 P0481E12.1 ENOG411EIZN SPL O81836 SPL_ARATH Protein SPOROCYTELESS (Protein NOZZLE) (Transcription factor SPL) DISRUPTION PHENOTYPE: Complete male and female sterility. {ECO:0000269|PubMed:10465788}. Complete male and female sterile; Albino stamens; Delayed senescence-V. Sundaresan-1999 FUNCTION: Transcriptional regulator of sporocyte development (PubMed:10465788). Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors (PubMed:25378179). Required for nucellus and embryo sac development (PubMed:10500234). Plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes during ovule development (PubMed:12183381). Involved in establishing the prospective chalaza of the ovule and in controlling the cell number and the length of the funiculus, and is required for the development of the integuments (PubMed:10976054). Required, with BEL1, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). Involved in controlling stamen identity (PubMed:19726570). May also regulate the morphology of lateral organs by repressing auxin production (PubMed:18557819). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:10500234, ECO:0000269|PubMed:10976054, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:18557819, ECO:0000269|PubMed:19726570, ECO:0000269|PubMed:22786869, ECO:0000269|PubMed:25378179}. 34078 Protein SPOROCYTELESS (Protein NOZZLE) (Transcription factor SPL) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during microsporogenesis and megasoprogenesis (PubMed:10465788). Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Expressed in flower buds (PubMed:10465788, PubMed:10500234). Not found in leaves, siliques and stems (PubMed:10465788). Detected in rosette leaves, stem tissue and seedlings (PubMed:10500234). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:10500234}. locus:2131729; AT4G27330 Plant transcription factor NOZZLE NA NA NA NA NA NA NA ENOG411EG80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EG81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STI NA NA NA NA NA NA NA ENOG411EG83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0420400 protein A0A0P0X563 A0A0P0X563_ORYSJ Os07g0420400 OSNPB_070420400 ENOG411EG87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EG89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXN8 RDR4,RDR3,RDR5 O82189,O82190,O82188,A0A1P8B2V4,A0A1P8B2V9,A0A1P8B184,A0A1P8B192,A0A1P8B1A9,A0A1P8AY46 RDR4_ARATH,RDR3_ARATH,RDR5_ARATH,A0A1P8B2V4_ARATH,A0A1P8B2V9_ARATH,A0A1P8B184_ARATH,A0A1P8B192_ARATH,A0A1P8B1A9_ARATH,A0A1P8AY46_ARATH Probable RNA-dependent RNA polymerase 4 (AtRDRP4) (EC 2.7.7.48) (RNA-directed RNA polymerase 4),Probable RNA-dependent RNA polymerase 3 (AtRDRP3) (EC 2.7.7.48) (RNA-directed RNA polymerase 3),Probable RNA-dependent RNA polymerase 5 (AtRDRP5) (EC 2.7.7.48) (RNA-directed RNA polymerase 5),RNA-dependent RNA polymerase (EC 2.7.7.48) FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000250}.,FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000256|RuleBase:RU363098}. 2.7.7.48 105180,112759,110889,110277,111026,106816,105052,105109,111741 Probable RNA-dependent RNA polymerase 4 (AtRDRP4) (EC 2.7.7.48) (RNA-directed RNA polymerase 4),Probable RNA-dependent RNA polymerase 3 (AtRDRP3) (EC 2.7.7.48) (RNA-directed RNA polymerase 3),Probable RNA-dependent RNA polymerase 5 (AtRDRP5) (EC 2.7.7.48) (RNA-directed RNA polymerase 5),RNA-dependent RNA polymerase (EC 2.7.7.48) RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]; gene silencing by RNA [GO:0031047] locus:2052030;,locus:2052040;,locus:2052020; AT2G19920,AT2G19910,AT2G19930 RNA-dependent RNA polymerase Probable RNA-dependent RNA polymerase 3 (OsRDR3) (EC 2.7.7.48),Probable RNA-dependent RNA polymerase 4 (OsRDR4) (EC 2.7.7.48),RNA-dependent RNA polymerase (EC 2.7.7.48) (Fragment),RNA-dependent RNA polymerase (EC 2.7.7.48) Q5QMN5,Q5QMN4,A0A0P0UZ91,A0A0P0UZF2 RDR3_ORYSJ,RDR4_ORYSJ,A0A0P0UZ91_ORYSJ,A0A0P0UZF2_ORYSJ RDR3 Os01g0197900 LOC_Os01g10130 B1046G12.12 B1046G12.13 OsJ_00745 P0419B01.24 P0419B01.25,RDR4 Os01g0198000 LOC_Os01g10140 B1046G12.14 P0419B01.26,Os01g0198000 OSNPB_010198000,Os01g0197900 OSNPB_010197900 FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000250}.,FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000256|RuleBase:RU363098}. ENOG411DXN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411DXN6 ASHR2 Q9ZUM9 ASHR2_ARATH Histone-lysine N-methyltransferase ASHR2 (EC 2.1.1.43) (ASH1-related protein 2) (Protein SET DOMAIN GROUP 39) FUNCTION: Histone methyltransferase. {ECO:0000250}. 2.1.1.43 43761 Histone-lysine N-methyltransferase ASHR2 (EC 2.1.1.43) (ASH1-related protein 2) (Protein SET DOMAIN GROUP 39) chromosome [GO:0005694]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024] locus:2050434; AT2G19640 Histone-lysine n-methyltransferase Os08g0205300 protein (SET-domain transcriptional regulator-like protein) Q6ZCF6,Q6ZCF7 Q6ZCF6_ORYSJ,Q6ZCF7_ORYSJ P0486F07.32-2 Os08g0205300 OJ1119_C05.3-2 OsJ_26404 OSNPB_080205300,P0486F07.32-1 Os08g0205300 OJ1119_C05.3-1 OSNPB_080205300 ENOG411DXN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os07g0502900 protein A0A0P0X6R2 A0A0P0X6R2_ORYSJ Os07g0502900 OSNPB_070502900 ENOG411DXN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) Os05g0115600 protein (Unknow protein) (cDNA clone:001-118-A10, full insert sequence) Q65XA5 Q65XA5_ORYSJ Os05g0115600 Os05g0115600 OJ1654_B10.13 OsJ_16888 OSNPB_050115600 P0496H07.3 ENOG411DXN5 CHLD Q9SJE1 CHLD_ARATH Magnesium-chelatase subunit ChlD, chloroplastic (Mg-chelatase subunit D) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlD) (Protein ALBINA 1) (Protein PIGMENT DEFECTIVE EMBRYO 166) DISRUPTION PHENOTYPE: Pigment defective seeds and embryos. {ECO:0000269|PubMed:19812694}. Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. The magnesium-chelatase is a complex of three subunits, CHLI, CHLD and CHLH. The reaction takes place in two steps, with an ATP-dependent activation followed by an ATP-dependent chelation step. Does not bind abscisic acid. {ECO:0000269|PubMed:19812694, ECO:0000269|PubMed:23011401}. MISCELLANEOUS: Over-expression of CHLD has no impact on abscisic acid sensitivity. {ECO:0000305|PubMed:23011401}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT1G08520-MONOMER;MetaCyc:AT1G08520-MONOMER; 6.6.1.1 83284 Magnesium-chelatase subunit ChlD, chloroplastic (Mg-chelatase subunit D) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlD) (Protein ALBINA 1) (Protein PIGMENT DEFECTIVE EMBRYO 166) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; magnesium chelatase complex [GO:0010007]; ATP binding [GO:0005524]; magnesium chelatase activity [GO:0016851]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979] locus:2201796; AT1G08520 magnesium-chelatase subunit chlD Magnesium-chelatase subunit ChlD, chloroplastic (Mg-chelatase subunit D) (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase subunit ChlD) (Protein CHLORINA 1),Mg-protoporphyrin IX chelatase (EC 6.6.1.1) (Fragment) Q6ATS0,A0A0N7KI96 CHLD_ORYSJ,A0A0N7KI96_ORYSJ CHLD CHL1 Os03g0811100 LOC_Os03g59640 OsJ_13066 OSJNBa0028F23.2 OSJNBb0033J23.6,Os03g0811100 OSNPB_030811100 DISRUPTION PHENOTYPE: Homozygous KO plants are chlorotic lethal. {ECO:0000269|PubMed:16915519}. FUNCTION: Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. The reaction takes place in two steps, with an ATP-dependent activation followed by an ATP-dependent chelation step. {ECO:0000269|PubMed:16915519, ECO:0000269|PubMed:22226678}.,FUNCTION: Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. {ECO:0000256|RuleBase:RU362087}. ENOG411DXN2 PUP3,PUP1,PUP2 Q9FZ95,Q9FZ96,Q94GB1 PUP3_ARATH,PUP1_ARATH,PUP2_ARATH Purine permease 3 (AtPUP3),Purine permease 1 (AtPUP1),Purine permease 2 (AtPUP2) FUNCTION: May be involved in transport of purine derivatives during pollen germination and tube elongation. {ECO:0000269|PubMed:12662305}.,FUNCTION: Proton-coupled purine transporter mediating adenine and trans-zeatin uptake (PubMed:12662305). High affinity transporter for pyridoxine involved in the uptake of vitamin B6 (PubMed:23551747). Also able to transport caffeine and adenosine (PubMed:12662305). May be involved in the uptake of cytokinin, caffeine and nicotine from the xylem sap into shoot tissues (PubMed:12662305). {ECO:0000269|PubMed:12662305, ECO:0000269|PubMed:23551747}.,FUNCTION: Mediates adenine transport. May be involved in the uptake of cytokinin analogs. {ECO:0000269|PubMed:12662305}. ARA:GQT-2834-MONOMER;MetaCyc:MONOMER-14768;,ARA:GQT-2266-MONOMER;MetaCyc:MONOMER-14778; 38871,39280,39461 Purine permease 3 (AtPUP3),Purine permease 1 (AtPUP1),Purine permease 2 (AtPUP2) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863],integral component of plasma membrane [GO:0005887]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleoside transmembrane transporter activity [GO:0015211]; cytokinin transport [GO:0010184]; purine nucleobase transport [GO:0006863] TISSUE SPECIFICITY: Restricted to pollen. {ECO:0000269|PubMed:12662305}.,TISSUE SPECIFICITY: Highly expressed in leaves, stems and flowers, lower in siliques and not detected in roots (PubMed:10662864, PubMed:12662305). Expressed in the epithem of hydathodes and the stigma surface of siliques (PubMed:12662305, PubMed:23551747). {ECO:0000269|PubMed:10662864, ECO:0000269|PubMed:12662305, ECO:0000269|PubMed:23551747}.,TISSUE SPECIFICITY: Expressed in the vascular system of leaves. Restricted to the phloem. Expressed in flowers and roots and not detected in stems. {ECO:0000269|PubMed:12662305}. locus:2032159;,locus:2032148;,locus:2057666; AT1G28220,AT1G28230,AT2G33750 purine permease Os09g0467400 protein (Putative purine permease),Os09g0467400 protein (Putative purine permease) (cDNA clone:J013073M15, full insert sequence),Os05g0269700 protein,Os04g0162533 protein Q6K5E9,Q6K5F0,B9FNK3,A0A0P0W6S2 Q6K5E9_ORYSJ,Q6K5F0_ORYSJ,B9FNK3_ORYSJ,A0A0P0W6S2_ORYSJ P0676H02.4 Os09g0467400 OSNPB_090467400,Os09g0467400 OSNPB_090467400 P0676H02.3,Os05g0269700 OsJ_17851 OSNPB_050269700,Os04g0162533 OSNPB_040162533 ENOG411DXN3 CXE16,CXE11 Q8LED9,Q9LK21 CXE16_ARATH,CXE11_ARATH Probable carboxylesterase 16 (AtCXE16) (EC 3.1.1.1),Probable carboxylesterase 11 (AtCXE11) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. 3.1.1.1 49368,50531 Probable carboxylesterase 16 (AtCXE16) (EC 3.1.1.1),Probable carboxylesterase 11 (AtCXE11) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2145608;,locus:2086503; AT5G14310,AT3G27320 Carboxylesterase Esterase, putative, expressed (Os12g0256000 protein),B1065G12.16 protein (Os01g0902300 protein) (Putative PrMC3),Os01g0902300 protein Q2QUR1,Q8RZ79,A0A0P0VBQ6 Q2QUR1_ORYSJ,Q8RZ79_ORYSJ,A0A0P0VBQ6_ORYSJ LOC_Os12g15400 Os12g0256000 OSNPB_120256000,B1065G12.16 Os01g0902300 OSNPB_010902300 P0551C06.21,Os01g0902300 OSNPB_010902300 ENOG411DXN0 IPK1,T4M14.8 Q93YN9,A0A1P8AUC2,Q93WB3,Q1PFT7,Q94HW4 IPPK_ARATH,A0A1P8AUC2_ARATH,Q93WB3_ARATH,Q1PFT7_ARATH,Q94HW4_ARATH Inositol-pentakisphosphate 2-kinase (EC 2.7.1.158) (Inositol-1,3,4,5,6-pentakisphosphate 2-kinase) (Ins(1,3,4,5,6)P5 2-kinase) (AtIPK1) (InsP5 2-kinase),Inositol-pentakisphosphate 2-kinase family protein,Inositol-pentakisphosphate 2-kinase family protein (Uncharacterized protein T4M14.4) (Uncharacterized protein T4M14.8),Inositol-pentakisphosphate 2-kinase family protein (Uncharacterized protein T4M14.6) FUNCTION: Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate). Phytate is a regulator of intracellular signaling, a highly abundant animal antinutrient, and a phosphate store in plant seeds. Also phosphorylates Ins(1,3,4,6)P4 and Ins(1,4,5,6)P4 to produce Ins(1,2,3,4,6)P5 and Ins(1,2,4,5,6)P5. {ECO:0000269|PubMed:16107538, ECO:0000269|PubMed:16223361}.,FUNCTION: Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate). {ECO:0000256|RuleBase:RU364126}. ARA:AT1G58643-MONOMER;ARA:AT1G58936-MONOMER;ARA:AT1G59312-MONOMER;,ARA:AT1G22100-MONOMER; R-ATH-1855167;R-ATH-1855191; 2.7.1.158 50509,51530,55496,50167,8834 Inositol-pentakisphosphate 2-kinase (EC 2.7.1.158) (Inositol-1,3,4,5,6-pentakisphosphate 2-kinase) (Ins(1,3,4,5,6)P5 2-kinase) (AtIPK1) (InsP5 2-kinase),Inositol-pentakisphosphate 2-kinase family protein,Inositol-pentakisphosphate 2-kinase family protein (Uncharacterized protein T4M14.4) (Uncharacterized protein T4M14.8),Inositol-pentakisphosphate 2-kinase family protein (Uncharacterized protein T4M14.6) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; inositol pentakisphosphate 2-kinase activity [GO:0035299]; inositol tetrakisphosphate 2-kinase activity [GO:0032942]; metal ion binding [GO:0046872]; cellular phosphate ion homeostasis [GO:0030643]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to virus [GO:0051607]; growth [GO:0040007]; inositol phosphorylation [GO:0052746]; lateral root development [GO:0048527]; myo-inositol hexakisphosphate biosynthetic process [GO:0010264]; phosphate ion homeostasis [GO:0055062],ATP binding [GO:0005524]; inositol pentakisphosphate 2-kinase activity [GO:0035299],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; ATP binding [GO:0005524]; inositol pentakisphosphate 2-kinase activity [GO:0035299]; inositol phosphate biosynthetic process [GO:0032958]; inositol phosphorylation [GO:0052746],nucleus [GO:0005634]; ATP binding [GO:0005524]; inositol pentakisphosphate 2-kinase activity [GO:0035299]; inositol phosphate biosynthetic process [GO:0032958]; inositol phosphorylation [GO:0052746] TISSUE SPECIFICITY: Strongly expressed in leaves and cauline leaves. Weakly expressed in siliques and flowers. In flower, it is expressed in the major organs of developing flower buds. Strongly expressed in sepals, petals, in the male and female organs of immature and mature flower buds. Strongly expressed in the gynoecium and carpels which are fused to form the gynoecium. Also expressed in the transmitting tissue and ovules. {ECO:0000269|PubMed:16223361}. locus:2165437;,locus:2826993;locus:2827032;locus:504956185;,locus:2030571;,locus:2826973; AT5G42810,AT1G58643AT1G58936;AT1G59312;,AT1G22100,AT1G59171 Inositol-pentakisphosphate Inositol-pentakisphosphate 2-kinase IPK1 (EC 2.7.1.158) (Inositol-1,3,4,5,6-pentakisphosphate 2-kinase IPK1) (OsIPK1) (Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase 1) Q7XQZ6 IPK1_ORYSJ IPK1 Os04g0661200 LOC_Os04g56580 OsJ_16498 OSJNBa0015K02.18 FUNCTION: Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate). Phytate is a regulator of intracellular signaling, a highly abundant animal antinutrient, and a phosphate store in plant seeds. Also phosphorylates Ins(1,3,4,6)P4 and Ins(1,4,5,6)P4 to produce Ins(1,2,3,4,6)P5 and Ins(1,2,4,5,6)P5. {ECO:0000250|UniProtKB:Q93YN9}. ENOG411DXN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0450500 protein (cDNA clone:001-020-D05, full insert sequence) Q0JCT3 Q0JCT3_ORYSJ Os04g0450500 Os04g0450500 OSNPB_040450500 ENOG411DXNN EXO70E1 Q9LIA2 Q9LIA2_ARATH Exocyst subunit exo70 family protein E1 (Uncharacterized protein At3g29400) R-ATH-5620916; 75226 Exocyst subunit exo70 family protein E1 (Uncharacterized protein At3g29400) cytosol [GO:0005829]; exocyst [GO:0000145]; exocytosis [GO:0006887] locus:2093802; AT3G29400 exo70 exocyst complex subunit domain containing protein expressed Os01g0763700 protein (Os01g0763750 protein) (cDNA clone:001-200-G03, full insert sequence) (cDNA clone:J013123A15, full insert sequence) (cDNA clone:J033107M19, full insert sequence) Q0JJ28 Q0JJ28_ORYSJ Os01g0763750 Os01g0763700 OsJ_03555 OSNPB_010763750 ENOG411DXNM F3C22_60 Q9LXJ8,F4K739 Q9LXJ8_ARATH,F4K739_ARATH At3g52660 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein R-ATH-72163;R-ATH-75094; 52079,19688 At3g52660 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein cytosol [GO:0005829]; mRNA binding [GO:0003729],RNA binding [GO:0003723] locus:2083248;,locus:2146564; AT3G52660,AT5G28390 heterogeneous nuclear ribonucleoprotein Os12g0136200 protein (RNA recognition motif family protein, expressed),Os10g0151800 protein (RNA recognition motif family protein, expressed) (cDNA clone:J013065B13, full insert sequence),Os11g0139500 protein,Os11g0250000 protein,Os11g0139500 protein (Fragment),Os12g0136200 protein (Fragment) Q2QY16,Q33B10,A0A0P0XYN3,A0A0N7KSQ1,A0A0P0XYR2,A0A0P0Y6U6 Q2QY16_ORYSJ,Q33B10_ORYSJ,A0A0P0XYN3_ORYSJ,A0A0N7KSQ1_ORYSJ,A0A0P0XYR2_ORYSJ,A0A0P0Y6U6_ORYSJ Os12g0136200 LOC_Os12g04180 OSNPB_120136200,Os10g0151800 LOC_Os10g06130 OSNPB_100151800,Os11g0139500 OSNPB_110139500,Os11g0250000 OSNPB_110250000,Os12g0136200 OSNPB_120136200 ENOG411DXNJ O80470 GDL38_ARATH GDSL esterase/lipase At2g23540 (EC 3.1.1.-) (Extracellular lipase At2g23540) ARA:AT2G23540-MONOMER; 3.1.1.- 42083 GDSL esterase/lipase At2g23540 (EC 3.1.1.-) (Extracellular lipase At2g23540) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2046743; AT2G23540 GDSL esterase lipase Os07g0668300 protein (cDNA clone:006-207-G04, full insert sequence) Q0D3T0 Q0D3T0_ORYSJ Os07g0668300 Os07g0668300 OSNPB_070668300 ENOG411DXNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF716) Os09g0444800 protein (Plant viral-response family protein-like) Q67U55 Q67U55_ORYSJ Os09g0444800 OJ1123_B08.13 OsJ_29551 OSNPB_090444800 ENOG411DXNH RLP12,F26A9.23,RLP11 Q9C9H7,Q9C9H6,A0A1P8ASL2 RLP12_ARATH,Q9C9H6_ARATH,A0A1P8ASL2_ARATH Receptor-like protein 12 (AtRLP12),Putative disease resistance protein; 69620-67266 (Receptor like protein 11),Receptor like protein 11 FUNCTION: Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. {ECO:0000269|PubMed:19897604}.,FUNCTION: Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. {ECO:0000250|UniProtKB:Q9C9H7}. 95284,88731,89317 Receptor-like protein 12 (AtRLP12),Putative disease resistance protein; 69620-67266 (Receptor like protein 11),Receptor like protein 11 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2825384;,locus:2825389; AT1G71400,AT1G71390 receptor like protein 12 NA NA NA NA NA NA NA ENOG411DXNI MYN21.1 Q8LFZ9,Q9FG75,A0A1P8BBY5 Q8LFZ9_ARATH,Q9FG75_ARATH,A0A1P8BBY5_ARATH Sucrase-like protein (Sucrase/ferredoxin-like family protein),At5g55900 (Sucrase/ferredoxin-like family protein) (Sucrose cleavage protein-like),Sucrase/ferredoxin-like family protein 48977,45731,34430 Sucrase-like protein (Sucrase/ferredoxin-like family protein),At5g55900 (Sucrase/ferredoxin-like family protein) (Sucrose cleavage protein-like),Sucrase/ferredoxin-like family protein cytosol [GO:0005829] locus:2133842;,locus:2178383; AT4G26620,AT5G55900 Sucrase/ferredoxin-like Os02g0725100 protein (cDNA clone:001-003-A01, full insert sequence) B7EW17 B7EW17_ORYSJ Os02g0725100 Os02g0725100 OSNPB_020725100 ENOG411DXNF ACR3 O49285 ACR3_ARATH ACT domain-containing protein ACR3 (Protein ACT DOMAIN REPEATS 3) FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 50403 ACT domain-containing protein ACR3 (Protein ACT DOMAIN REPEATS 3) cytosol [GO:0005829]; amino acid binding [GO:0016597] TISSUE SPECIFICITY: Expressed in roots, cotyledons, rosette and cauline leaves, sepals, style, and pedicels and tips of young developing siliques. {ECO:0000269|PubMed:12481063}. locus:2025317; AT1G76990 ACT domain Os02g0555600 protein (Putative ACT domain-containing protein) (cDNA clone:J023002N03, full insert sequence) Q6ZI91 Q6ZI91_ORYSJ Os02g0555600 OJ1008_F08.3 OSNPB_020555600 P0470G10.34 ENOG411DXNG eEF-1Bb1 Q9SI20,P48006,A8MRC4 EF1D2_ARATH,EF1D1_ARATH,A8MRC4_ARATH Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation factor 1B-beta 2) (eEF-1B beta 2),Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation factor 1B-beta 1) (eEF-1B beta 1),Translation elongation factor EF1B/ribosomal protein S6 family protein FUNCTION: EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP. {ECO:0000250}.,FUNCTION: EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP. 25266,25132,28777 Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation factor 1B-beta 2) (eEF-1B beta 2),Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation factor 1B-beta 1) (eEF-1B beta 1),Translation elongation factor EF1B/ribosomal protein S6 family protein cytosol [GO:0005829]; eukaryotic translation elongation factor 1 complex [GO:0005853]; translation elongation factor activity [GO:0003746],eukaryotic translation elongation factor 1 complex [GO:0005853]; translation elongation factor activity [GO:0003746],cytosol [GO:0005829]; eukaryotic translation elongation factor 1 complex [GO:0005853]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ribosome [GO:0005840]; translation elongation factor activity [GO:0003746]; lignin metabolic process [GO:0009808]; plant-type cell wall assembly [GO:0071668]; regulation of cellulose biosynthetic process [GO:2001006]; response to cadmium ion [GO:0046686] locus:2053144;,locus:2009807; AT2G18110,AT1G30230 Elongation factor Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation factor 1B-beta 2) (eEF-1B beta 2),Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation factor 1B-beta 1) (eEF-1B beta 1),Os07g0614500 protein (Fragment) Q40682,Q40680,A0A0P0X986 EF1D2_ORYSJ,EF1D1_ORYSJ,A0A0P0X986_ORYSJ Os03g0406200 LOC_Os03g29260 OSJNBa0002D18.20,Os07g0614500 LOC_Os07g42300 P0616D06.117,Os07g0614500 OSNPB_070614500 FUNCTION: EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP. ENOG411DXND ABCI7 Q9LQK7 AB7I_ARATH Protein ABCI7, chloroplastic (ABC transporter I family member 7) (ABC transporter ABCI.7) (AtABCI7) (Non-intrinsic ABC protein 6) (Plastid SufD-like protein) Homozygous offsprings of the T-DNA line show a characteristic set of phenotypes. The chlorophyll content is reduced to 75% compared to wild type. Plants appear slightly bleached. The ultrastructure of the plastids is conspicuously different to wild type plastids. Most evident is the structure of the thylakoids which are reduced and the grana are unorganized compared to the wild type situation. The overall architecture of mutant homozygous plants is slightly altered compared to wild type. Roots of 6 day-old seedlings were 35% shorter on average. The main macroscopic effect of the mutation is that mutant plants produce a large amount of aborted seeds. Only about 60% of the mature seeds contain phenotypically normal viable embryos. Up to 30% of the seeds are aborted dark and shrunken and do not germinate. Most of these aborted seeds contain embryos arrested at the globular stage as well as ball/oblong-shaped embryos (ca. 75%). The morphogenesis of these embryos was blocked before initiation of cotyledon growth and establishment of bilateral symmetry. The other aborted seeds contain embryos arrested at the torpedo or bent cotyledon stage with abnormal- shaped thickened hypocotyls and underdeveloped cotyledons (ca. 25%). About 10% of all seeds are narrow containing undersized tenuous embryos which are not viable. 52825 Protein ABCI7, chloroplastic (ABC transporter I family member 7) (ABC transporter ABCI.7) (AtABCI7) (Non-intrinsic ABC protein 6) (Plastid SufD-like protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; transporter activity [GO:0005215]; embryo development ending in seed dormancy [GO:0009793]; iron-sulfur cluster assembly [GO:0016226]; thylakoid membrane organization [GO:0010027]; transport [GO:0006810] locus:2033734; AT1G32500 protein ABCI7 chloroplastic-like Os01g0127300 protein (Putative SufD) (cDNA clone:J013162I04, full insert sequence) Q5ZDZ8 Q5ZDZ8_ORYSJ Os01g0127300 OSNPB_010127300 P0409B08.19 ENOG411DXNE UXT1 F4IHS9,A0A1P8B170 UXT1_ARATH,A0A1P8B170_ARATH UDP-xylose transporter 1,Nucleotide/sugar transporter family protein DISRUPTION PHENOTYPE: No visible phenotype. Slight reduction of xylose content in the cell wall composition. {ECO:0000269|PubMed:25804536}. FUNCTION: Nucleotide-sugar transporter that transports UDP-xylose and UMP in a strict counter-exchange mode. {ECO:0000269|PubMed:25804536}. 37444,34423 UDP-xylose transporter 1,Nucleotide/sugar transporter family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; UDP-xylose transmembrane transporter activity [GO:0005464]; carbohydrate transport [GO:0008643]; UDP-xylose transport [GO:0015790],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:25804536}. locus:504955965; AT2G28315 Triose-phosphate Transporter family Os02g0628200 protein (Phosphate translocator-like) (cDNA clone:J023066G14, full insert sequence),Os06g0506200 protein (cDNA clone:J013119D13, full insert sequence),Os02g0628200 protein (Fragment) Q6K225,Q0DBY8,A0A0P0VM62 Q6K225_ORYSJ,Q0DBY8_ORYSJ,A0A0P0VM62_ORYSJ Os02g0628200 Os02g0628200 B1469H02.8 OsJ_07600 OSNPB_020628200,Os06g0506200 Os06g0506200 OSNPB_060506200,Os02g0628200 OSNPB_020628200 ENOG411DXNB Q944M6 Q944M6_ARATH AT4g20040/F18F4_140 (Pectin lyase-like superfamily protein) ARA:AT4G20040-MONOMER; 52350 AT4g20040/F18F4_140 (Pectin lyase-like superfamily protein) lyase activity [GO:0016829] locus:2119817; AT4G20040 polygalacturonase QRT3-like NA NA NA NA NA NA NA ENOG411DXNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0163500 protein) (cDNA clone:J033027D16, full insert sequence),Expressed protein (Os12g0163500 protein) (cDNA clone:J033119K12, full insert sequence) Q53PP7,Q2QXB1 Q53PP7_ORYSJ,Q2QXB1_ORYSJ Os11g0163500 LOC_Os11g06410 Os11g0163500 OSNPB_110163500,Os12g0163500 LOC_Os12g06640 Os12g0163500 OsJ_35324 OSNPB_120163500 ENOG411DXNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6AUW9 Q6AUW9_ORYSJ Os05g0499400 prx75 Os05g0499400 OJ1057_B02.7 OsJ_19082 OSNPB_050499400 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DXNZ MYC2,MYC3,MYC4 Q39204,Q9FIP9,O49687 MYC2_ARATH,MYC3_ARATH,MYC4_ARATH Transcription factor MYC2 (AtMYC2) (Basic helix-loop-helix protein 6) (AtbHLH6) (bHLH 6) (Protein JASMONATE INSENSITIVE 1) (R-homologous Arabidopsis protein 1) (RAP-1) (Transcription factor EN 38) (Z-box binding factor 1 protein) (bHLH transcription factor bHLH006) (rd22BP1),Transcription factor MYC3 (Basic helix-loop-helix protein 5) (AtbHLH5) (bHLH 5) (Protein ALTERED TRYPTOPHAN REGULATION 2) (Transcription factor ATR2) (Transcription factor EN 36) (bHLH transcription factor bHLH005),Transcription factor MYC4 (AtMYC4) (Basic helix-loop-helix protein 4) (AtbHLH4) (bHLH 4) (Transcription factor EN 37) (bHLH transcription factor bHLH004) DISRUPTION PHENOTYPE: Minor effect on jasmonic acid response and no effect on glucosinolate biosynthesis, but decreased abscisic acid sensitivity. Myc2 and myc3 double mutant has an increased insensitivity to jasmonic acid. Myc2 and myc4 double mutant has an increased insensitivity to jasmonic acid. Myc2, myc3 and myc4 triple mutant has no jasmonate-related defense response, is devoid of glucosinolates and is extremely susceptible to generalist herbivores. {ECO:0000269|PubMed:12509522, ECO:0000269|PubMed:15208388, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}.,DISRUPTION PHENOTYPE: Minor effect on jasmonic acid response and no effect on glucosinolate biosynthesis. Myc2 and myc3 double mutant has an increased insensitivity to jasmonic acid. Myc2, myc3 and myc4 triple mutant has no jasmonate-related defense response, is devoid of glucosinolates and is extremely susceptible to generalist herbivores. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}.,DISRUPTION PHENOTYPE: Minor effect on jasmonic acid response and no effect on glucosinolate biosynthesis. Myc2 and myc4 double mutant has an increased insensitivity to jasmonic acid. Myc2, myc3 and myc4 triple mutant has no jasmonate-related defense response, is devoid of glucosinolates and is extremely susceptible to generalist herbivores. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. FUNCTION: Transcriptional activator. Common transcription factor of light, abscisic acid (ABA), and jasmonic acid (JA) signaling pathways. With MYC3 and MYC4, controls additively subsets of JA-dependent responses. In cooperation with MYB2 is involved in the regulation of ABA-inducible genes under drought stress conditions. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the MYC recognition site (5'-CACATG-3'), and to the G-box (5'-CACNTG-3') and Z-box (5'-ATACGTGT-3') of promoters. Binds directly to the promoters of the transcription factors PLETHORA1 (PLT1) and PLT2 and represses their expression. Negative regulator of blue light-mediated photomorphogenic growth and blue- and far-red-light regulated gene expression. Activates multiple TIFY/JAZ promoters. Positive regulator of lateral root formation. Regulates sesquiterpene biosynthesis. Subjected to proteasome-dependent proteolysis. The presence of the destruction element (DE) involved in turnover is required for the function to regulate gene transcription. {ECO:0000269|PubMed:12509522, ECO:0000269|PubMed:15208388, ECO:0000269|PubMed:15923349, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:21954460, ECO:0000269|PubMed:22669881, ECO:0000269|PubMed:23142764, ECO:0000269|PubMed:23593022, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9368419}.,FUNCTION: Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}.,FUNCTION: Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. 67950,64992,64589 Transcription factor MYC2 (AtMYC2) (Basic helix-loop-helix protein 6) (AtbHLH6) (bHLH 6) (Protein JASMONATE INSENSITIVE 1) (R-homologous Arabidopsis protein 1) (RAP-1) (Transcription factor EN 38) (Z-box binding factor 1 protein) (bHLH transcription factor bHLH006) (rd22BP1),Transcription factor MYC3 (Basic helix-loop-helix protein 5) (AtbHLH5) (bHLH 5) (Protein ALTERED TRYPTOPHAN REGULATION 2) (Transcription factor ATR2) (Transcription factor EN 36) (bHLH transcription factor bHLH005),Transcription factor MYC4 (AtMYC4) (Basic helix-loop-helix protein 4) (AtbHLH4) (bHLH 4) (Transcription factor EN 37) (bHLH transcription factor bHLH004) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of flavonoid biosynthetic process [GO:0009963]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of defense response to insect [GO:2000068]; regulation of sequence-specific DNA binding transcription factor activity [GO:0051090]; regulation of transcription from RNA polymerase II promoter in response to oxidative stress [GO:0043619]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to desiccation [GO:0009269]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; bHLH transcription factor binding [GO:0043425]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anthocyanin-containing compound biosynthetic process [GO:0009718]; defense response [GO:0006952]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; bHLH transcription factor binding [GO:0043425]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anthocyanin-containing compound biosynthetic process [GO:0009718]; defense response [GO:0006952]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Widely expressed in the whole plant with the highest expression in stem. Constitutively expressed in dark- and light-grown seedlings. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15923349}.,TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers, and seedlings. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}.,TISSUE SPECIFICITY: Expressed constitutively at low levels. Preferentially expressed in vascular tissues. {ECO:0000269|PubMed:12509522, ECO:0000269|PubMed:21335373}. locus:2035609;,locus:2178555;,locus:2141055; AT1G32640,AT5G46760,AT4G17880 Transcription factor Transcription factor MYC2 (OsMYC2) (Basic helix-loop-helix protein 9) (OsbHLH009) (bHLH 9),Os10g0506950 protein Q336P5,A0A0P0XW15 MYC2_ORYSJ,A0A0P0XW15_ORYSJ MYC2 BHLH9 Os10g0575000 LOC_Os10g42430 OSJNBa0003O19.20,Os10g0506950 OSNPB_100506950 FUNCTION: Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. ENOG411DXNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cation transmembrane transporter activity Probable cation transporter HKT9 (OsHKT9),Probable cation transporter HKT3 (OsHKT3) Q8L4K5,Q8L481 HKT9_ORYSJ,HKT3_ORYSJ HKT9 Os06g0701600 LOC_Os06g48800 OsJ_22537 P0596H10.8,HKT3 Os01g0532600 LOC_Os01g34850 OJ1619_F12.15 FUNCTION: Probable cation transporter. May be involved in regulation of K(+)/Na(+) homeostasis. ENOG411DXNY A0A1P8ANN5,A0A1P8ANL7,A0A1P8ANN2,F4IAF4 A0A1P8ANN5_ARATH,A0A1P8ANL7_ARATH,A0A1P8ANN2_ARATH,F4IAF4_ARATH Uncharacterized protein 63000,62242,68767,70126 Uncharacterized protein locus:2198871; AT1G05950 NA Aleurone layer morphogenesis protein (Os09g0514500 protein) Q7XZV4 Q7XZV4_ORYSJ ald Os09g0514500 OSNPB_090514500 ENOG411DXNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: UTP20 small subunit (SSU) processome component homolog (yeast) NA NA NA NA NA NA NA ENOG411DXNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os09g0411600 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6ESK7 Q6ESK7_ORYSJ Os09g0411600 OJ1294_G06.17 OSNPB_090411600 ENOG411DXNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF810) Os10g0471000 protein (Fragment),Os10g0264950 protein A0A0P0XW44,A0A0P0XT43 A0A0P0XW44_ORYSJ,A0A0P0XT43_ORYSJ Os10g0471000 OSNPB_100471000,Os10g0264950 OSNPB_100264950 ENOG411DXNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain Os05g0373000 protein (cDNA clone:J033080D06, full insert sequence) Q6I5Q0 Q6I5Q0_ORYSJ Os05g0373000 OSJNBa0025P09.11 OSNPB_050373000 ENOG411DXNR CPK17,CPK34 Q9FMP5,Q3E9C0 CDPKH_ARATH,CDPKY_ARATH Calcium-dependent protein kinase 17 (EC 2.7.11.1),Calcium-dependent protein kinase 34 (EC 2.7.11.1) FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 58484,58174 Calcium-dependent protein kinase 17 (EC 2.7.11.1),Calcium-dependent protein kinase 34 (EC 2.7.11.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of pollen tube growth [GO:0080092],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; regulation of pollen tube growth [GO:0080092] locus:2177023;,locus:2150225; AT5G12180,AT5G19360 calcium-dependent protein kinase Calcium-dependent protein kinase 2 (OsCDPK2) (OsCPK2) (EC 2.7.11.1),Calcium-dependent protein kinase 25 (OsCDPK25) (OsCPK25) (EC 2.7.11.1),Calcium-dependent protein kinase 14 (OsCDPK14) (OsCPK14) (EC 2.7.11.1),Calcium-dependent protein kinase 26 (OsCDPK26) (OsCPK26) (EC 2.7.11.1) Q5VQQ5,Q2RAV0,B9FKW9,Q2QY37 CDPK2_ORYSJ,CDPKP_ORYSJ,CDPKE_ORYSJ,CDPKQ_ORYSJ CPK2 Os01g0808400 LOC_Os01g59360 P0468B07.1 P0702B09.46,CPK25 CK1 Os11g0136600 LOC_Os11g04170,CPK14 Os05g0491900 LOC_Os05g41270 OsJ_19030 OSJNBa0088I06.13,CPK26 Os12g0133500 LOC_Os12g03970 OsJ_32884 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411DXNS EPC1 Q9LY62 GT644_ARATH Glycosyltransferase family 64 protein C4 (GT64 C4) (EC 2.4.1.-) (Protein ECTOPICALLY PARTING CELLS 1) (AtEPC1) DISRUPTION PHENOTYPE: In epc1-1, strong growth reduction, mechanical fragility, defects in vascular formation and enhanced secondary growth in hypocotyl tissues probably due to abnormal cell-cell adhesion properties in hypocotyl, cotyledon and cortical parenchyma tissues. Ectopic callose deposition, increased glucose level, but reduced level of galactose in cell walls (PubMed:16045474). In epc1-2, dwarf, reduced cell size, defective root hair development, delayed flowering, early senescence, and hypersensitivity to abscisic acid (ABA) during germination and root elongation. Reduced levels of beta-(1,4)-galactan (PubMed:17426055). {ECO:0000269|PubMed:16045474, ECO:0000269|PubMed:17426055}. Mutant plants have dramatically reduced growth habit defects in vascular formation and reduced cell-cell adhesion properties in hypocotyl and cotyledon tissues. Secondary growth is enhanced in epc1 hypocotyl tissues. When germinated on MS agar plates cotyledon and leaf expansion primary root elongation and hypocotyl elongation of the mutant seedlings were reduced compared with the wild type. Epidermal cells of hypocotyls and roots exhibited a left-handed spiraled organization which was not present in the wild type. Cotyledons of epc1 were curled at the edges thicker and more fragile than the wild type. Vascular patterning was disrupted in the epc1 mutants. Callose deposition in the vasculature of epc1 cotyledons was reduced compared to the wild type and the majority of seedlings showed no vascular-specific deposition. However the majority of epc1 seedlings showed ectopic callose deposition seen as extensive punctate distribution of fluorescent signal throughout the cotyledons leaves hypocotyl and root tissues. High penetrance of seedling lethality on soil; Curled, thick cotyledons; Short hypocotyls; Short roots; Increased lateral root number; Pale, bleached, small rosette leaves; Complete loss of branching; Severely reduced fertility; Fragile cotyledons-A. Marchant-2005 FUNCTION: Probable glycosyltransferase (By similarity). Maybe involved in cell-cell adhesion that maintains the integrity of organs by providing mechanical strength and facilitating the movement of metabolites throughout the plant during development (PubMed:16045474). Prevents abscisic acid- (ABA-) mediated effects on development (e.g. cell size, flowering time, senescence). Probably implicated in beta-(1,4)-galactan biosynthesis thus being a cell-wall synthesis-related (CWSR) protein (PubMed:17426055, PubMed:20687615). {ECO:0000250, ECO:0000269|PubMed:16045474, ECO:0000269|PubMed:17426055, ECO:0000303|PubMed:20687615}. MISCELLANEOUS: Initially thought to be involved in cell-cell adhesion (PubMed:16045474), this function could not be confirmed (PubMed:17426055). {ECO:0000305|PubMed:17426055}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT3G55830-MONOMER; 2.4.1.- 38300 Glycosyltransferase family 64 protein C4 (GT64 C4) (EC 2.4.1.-) (Protein ECTOPICALLY PARTING CELLS 1) (AtEPC1) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; metal ion binding [GO:0046872]; transferase activity, transferring glycosyl groups [GO:0016757]; UDP-glucosyltransferase activity [GO:0035251]; abscisic acid-activated signaling pathway [GO:0009738]; cell death [GO:0008219]; multicellular organism development [GO:0007275]; pectic galactan metabolic process [GO:0010401]; phloem or xylem histogenesis [GO:0010087]; plant-type cell wall cellulose metabolic process [GO:0052541]; protein glycosylation [GO:0006486]; response to abscisic acid [GO:0009737]; single organismal cell-cell adhesion [GO:0016337]; sphingolipid metabolic process [GO:0006665] TISSUE SPECIFICITY: Expressed in leaves, roots, stem, and flowers. {ECO:0000269|PubMed:17426055}. locus:2081983; AT3G55830 Glycosyl transferase family 64 domain Os06g0705000 protein (cDNA, clone: J075169H23, full insert sequence) B7F9C5 B7F9C5_ORYSJ Os06g0705000 OSNPB_060705000 ENOG411DXNP MJM20.1 Q9LDH9 Q9LDH9_ARATH At3g12870 (MJM20.1 protein) (Transmembrane protein) 23702 At3g12870 (MJM20.1 protein) (Transmembrane protein) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2090364; AT3G12870 NA Os03g0778400 protein A0A0P0W4L2 A0A0P0W4L2_ORYSJ Os03g0778400 OSNPB_030778400 ENOG411DXNQ Q9SQR0,A0A1I9LN17,F4J2F8,A0A1I9LN16 Q9SQR0_ARATH,A0A1I9LN17_ARATH,F4J2F8_ARATH,A0A1I9LN16_ARATH T11I18.13 protein,Uncharacterized protein 26978,27336,34690,21128 T11I18.13 protein,Uncharacterized protein cofactor binding [GO:0048037] locus:2095928; AT3G04020 NA Expressed protein (Os03g0276600 protein) (cDNA clone:J013067M23, full insert sequence) Q10NA8 Q10NA8_ORYSJ Os03g0276600 LOC_Os03g16870 Os03g0276600 OsJ_10330 OSNPB_030276600 ENOG411E2X9 Q9SAG6,A0A1P8AVJ1,A0A1P8AVK8,F4HVT3 Q9SAG6_ARATH,A0A1P8AVJ1_ARATH,A0A1P8AVK8_ARATH,F4HVT3_ARATH F23A5.30 protein (Snf1 kinase interactor-like protein) (Uncharacterized protein At1g80940),Snf1 kinase interactor-like protein 24244,17539,17473,19800 F23A5.30 protein (Snf1 kinase interactor-like protein) (Uncharacterized protein At1g80940),Snf1 kinase interactor-like protein kinase activity [GO:0016301] locus:2025802; AT1G80940 NA Protein HEADING DATE REPRESSOR 1 Q6K678 HDR1_ORYSJ HDR1 LOC_Os02g55080 Os02g0793900 OJ1249_F12.36 OsJ_08697 OSNPB_020793900 P0700F06.24 DISRUPTION PHENOTYPE: Slightly shorter plant. Early flowering phenotype in long days (LD) but not in short days (SD). {ECO:0000269|PubMed:26954091}. FUNCTION: Regulates flowering time via a photoperiod-dependent pathway. Suppressor of flowering that upregulates HD1 and downregulates EHD1 in long days (LD), thus leading to the down-regulation of HD3A and RFT1. Triggers OSK4-mediated HD1 phosphorylation. {ECO:0000269|PubMed:26954091}. ENOG411E2X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein Probable calcium-binding protein CML18 (Calmodulin-like protein 18),Os05g0223000 protein Q0DJV6,B9FJ38 CML18_ORYSJ,B9FJ38_ORYSJ CML18 Os05g0223000 LOC_Os05g13580 OJ1532_D06.3,Os05g0223000 OsJ_17595 OSNPB_050223000 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E2X4 DR1,''nuclear factor Y,NF-YB12,NF-YB13 P49592,Q9LEY8,Q944I5,F4KBG0,F4KBG1 NC2B_ARATH,Q9LEY8_ARATH,Q944I5_ARATH,F4KBG0_ARATH,F4KBG1_ARATH Protein Dr1 homolog (Negative cofactor 2-beta homolog) (NC2-beta homolog),DR1-like protein (Nuclear factor Y, subunit B12),AT5g08190/T22D6_130 (DR1-like protein) (Nuclear factor Y, subunit B12),Nuclear factor Y, subunit B13 17942,18229,18357,17814,16487 Protein Dr1 homolog (Negative cofactor 2-beta homolog) (NC2-beta homolog),DR1-like protein (Nuclear factor Y, subunit B12),AT5g08190/T22D6_130 (DR1-like protein) (Nuclear factor Y, subunit B12),Nuclear factor Y, subunit B13 nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2178307;,locus:2181529; AT5G23090,AT5G08190 Repressor protein Os08g0383700 protein (Fragment) A0A0P0XFH2,A0A0P0XFH6 A0A0P0XFH2_ORYSJ,A0A0P0XFH6_ORYSJ Os08g0383700 OSNPB_080383700 ENOG411E2X7 NPQ6 Q9FMH9 Q9FMH9_ARATH At5g43050 (YCF20-like protein (DUF565)) Morphologically WT. Quantitative nonphotochemical quenching (NPQ)measurements showed that the npq6 mutant exhibits less NPQ than WT. the biggest differences were seen in the induction phase of NPQ. The npq mutant has WT levels of teh maximum quantum yield of PSII chlorophylla+b contents and the xanthophyll cycle pigment pool size.,Nonphotochemical quenching measurements were lower than either of the single mutants. 17801 At5g43050 (YCF20-like protein (DUF565)) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; nonphotochemical quenching [GO:0010196] locus:2167811; AT5G43050 Protein of unknown function (DUF565) Os04g0488600 protein (Fragment) A0A0P0WBT8,A0A0P0WBY8,A0A0P0WBW1 A0A0P0WBT8_ORYSJ,A0A0P0WBY8_ORYSJ,A0A0P0WBW1_ORYSJ Os04g0488600 OSNPB_040488600 ENOG411E2X3 ERF062 Q9SVQ0 ERF62_ARATH Ethylene-responsive transcription factor ERF062 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 44255 Ethylene-responsive transcription factor ERF062 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2119555; AT4G13620 transcription factor NA NA NA NA NA NA NA ENOG411E2XY NIFU1 Q93W77 NIFU1_ARATH NifU-like protein 1, chloroplastic (AtCNfu1) (AtCnfU-IVb) FUNCTION: Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins. {ECO:0000250}. 24768 NifU-like protein 1, chloroplastic (AtCNfu1) (AtCnfU-IVb) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; iron ion binding [GO:0005506]; iron-sulfur cluster binding [GO:0051536]; structural molecule activity [GO:0005198]; iron-sulfur cluster assembly [GO:0016226] TISSUE SPECIFICITY: Predominantly expressed in floral stalks and siliques. Expressed in leaves, cauline leaves, flower stalks and flowers (at protein level). {ECO:0000269|PubMed:12553879, ECO:0000269|PubMed:15031412}. locus:2141400; AT4G01940 NifU-like protein 1 NifU-like domain containing protein, expressed (Os03g0314700 protein) (cDNA clone:J023009A17, full insert sequence) Q10MC1 Q10MC1_ORYSJ LOC_Os03g20010 Os03g0314700 OSNPB_030314700 ENOG411E2XX CXIP4 Q84Y18 CXIP4_ARATH CAX-interacting protein 4 FUNCTION: May regulate CAX1 cation transporter. {ECO:0000269|PubMed:14960315}. 37832 CAX-interacting protein 4 cytoplasm [GO:0005737]; nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in leaves, stems and roots, and at lower levels in flowers. {ECO:0000269|PubMed:14960315}. locus:2053210; AT2G28910 CAX-interacting protein CAX-interacting protein 4 (CAXIP4)-like (Os09g0103700 protein) (cDNA clone:J023079K08, full insert sequence),Os05g0297400 protein Q69K05,B9FK38 Q69K05_ORYSJ,B9FK38_ORYSJ Os09g0103700 Os09g0103700 OSJNBa0006G10.6 OSNPB_090103700 P0414D03.38,Os05g0297400 OsJ_17940 OSNPB_050297400 ENOG411E2XZ Q6NPW5,F4HSY8,F4HSY7 Q6NPW5_ARATH,F4HSY8_ARATH,F4HSY7_ARATH At1g27590 (Symplekin),Phosphatidylinositol 3-and 4-kinase family protein R-ATH-72163;R-ATH-77595; 29192,72951,73532 At1g27590 (Symplekin),Phosphatidylinositol 3-and 4-kinase family protein integral component of membrane [GO:0016021]; kinase activity [GO:0016301],kinase activity [GO:0016301] locus:2196869;,locus:2196914; AT1G27590,AT1G27570 Domain of unknown function (DUF3453) NA NA NA NA NA NA NA ENOG411E2XU BHLH87 Q8S3D2 BH087_ARATH Transcription factor bHLH87 (Basic helix-loop-helix protein 87) (AtbHLH87) (bHLH 87) (Transcription factor EN 121) (bHLH transcription factor bHLH087) Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. 41321 Transcription factor bHLH87 (Basic helix-loop-helix protein 87) (AtbHLH87) (bHLH 87) (Transcription factor EN 121) (bHLH transcription factor bHLH087) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}. locus:2089418; AT3G21330 Transcription factor BHLH transcription factor-like (Os01g0707500 protein) (cDNA clone:001-207-E08, full insert sequence) Q8S0N2 Q8S0N2_ORYSJ P0692C11.41-1 P0510F09.19-1 Os01g0707500 OsJ_03197 OSNPB_010707500 ENOG411E2XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NA NA NA NA NA NA NA ENOG411E2XM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C1-like domain NA NA NA NA NA NA NA ENOG411E2XH MNB8.13 Q9LVU5 Q9LVU5_ARATH Ribosomal protein L9/RNase H1 (Similarity to ribosomal protein L9) (Uncharacterized protein At5g53070) 25352 Ribosomal protein L9/RNase H1 (Similarity to ribosomal protein L9) (Uncharacterized protein At5g53070) ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2168377; AT5G53070 ribosomal protein Os05g0528900 protein (cDNA clone:J023015G24, full insert sequence) (cDNA clone:J023133O15, full insert sequence) Q65XC5 Q65XC5_ORYSJ Os05g0528900 Os05g0528900 OJ1187_E11.14 OsJ_19289 OSNPB_050528900 ENOG411E2XE GLB1 Q9ZST4 GLNB_ARATH Nitrogen regulatory protein P-II homolog (Protein PII-like) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but increased sensitivity to elevated levels of nitrite. {ECO:0000269|PubMed:16133214}. FUNCTION: Participates in sensing carbon and organic nitrogen status and regulates some steps of primary carbon and nitrogen metabolism. Required for nitrite uptake in chloroplasts and regulates arginine biosynthesis through interaction with acetylglutamate kinase (NAGK) in chloroplasts. Regulates fatty acids synthesis in chloroplasts by interacting with the acetyl-CoA carboxylase complex and inhibiting acetyl-CoA carboxylase (ACCase) activity. {ECO:0000269|PubMed:16133214, ECO:0000269|PubMed:18325336, ECO:0000269|PubMed:9811909}. 21275 Nitrogen regulatory protein P-II homolog (Protein PII-like) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; cytosol [GO:0005829]; plastid [GO:0009536]; acetylglutamate kinase regulator activity [GO:0010307]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; anthocyanin-containing compound biosynthetic process [GO:0009718]; nitrogen compound metabolic process [GO:0006807]; regulation of arginine biosynthetic process via ornithine [GO:2000013]; regulation of fatty acid biosynthetic process [GO:0042304]; regulation of nitrogen utilization [GO:0006808]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416]; response to sucrose [GO:0009744]; transcription, DNA-templated [GO:0006351] locus:2141355; AT4G01900 nitrogen regulatory protein PII Nitrogen regulatory protein P-II homolog (Protein PII-like) Q6AUR2 GLNB_ORYSJ GLB GLB1 Os05g0133100 LOC_Os05g04220 OsJ_17013 OSJNBa0077L08.6 FUNCTION: Participates in sensing carbon and organic nitrogen status and regulates some steps of primary carbon and nitrogen metabolism. {ECO:0000250}. ENOG411E2XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA kinase inhibitor Cyclin-dependent kinase inhibitor 4 (KIP-related protein 4),Os10g0471700 protein Q7XDH8,A0A0P0XVN8 KRP4_ORYSJ,A0A0P0XVN8_ORYSJ KRP4 Os10g0471700 LOC_Os10g33310 OsJ_030605 OSJNBb0094K03.16,Os10g0471700 OSNPB_100471700 ENOG411E2XF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os03g0265900 protein) (cDNA clone:J013071C06, full insert sequence) (cDNA clone:J013126L15, full insert sequence) Q10NL7 Q10NL7_ORYSJ LOC_Os03g15920 Os03g0265900 OSNPB_030265900 ENOG411E2XB O04527,O81061 O04527_ARATH,O81061_ARATH F20P5.9 protein (Ribosomal protein L7/L12 domain-containing protein) (Uncharacterized protein At1g70190),50S ribosomal protein L7/L12 (Ribosomal protein L12 family protein) (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein) 22722,12004 F20P5.9 protein (Ribosomal protein L7/L12 domain-containing protein) (Uncharacterized protein At1g70190),50S ribosomal protein L7/L12 (Ribosomal protein L12 family protein) (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein) integral component of membrane [GO:0016021]; mitochondrial large ribosomal subunit [GO:0005762]; mitochondrion [GO:0005739]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; mitochondrial large ribosomal subunit [GO:0005762]; peptidase activity [GO:0008233]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543]; mitochondrial transport [GO:0006839] locus:2020678;,locus:2056921; AT1G70190,AT2G03130 ribosomal protein Os05g0554100 protein (Putative 50S ribosomal protein L12) (cDNA clone:J033000J03, full insert sequence) (cDNA clone:J033063K17, full insert sequence) Q6I629 Q6I629_ORYSJ Os05g0554100 OJ1263_E10.8 OsJ_19481 OSNPB_050554100 ENOG411E007 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A12 (Alpha-expansin-12) (OsEXP12) (OsEXPA12) (OsaEXPa1.15) Q7G6Z2 EXP12_ORYSJ EXPA12 EXP12 Os03g0155300 LOC_Os03g06000 OsJ_09458 OSJNBa0011L14.18 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E006 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: solute carrier family 45 member Sucrose transport protein SUT3 (Sucrose permease 3) (Sucrose transporter 3) (OsSUT3) (Sucrose-proton symporter 3),Os10g0404566 protein,Os10g0404500 protein,Os10g0404533 protein Q948L0,A0A0N7KRR6,A0A0P0XTX0,A0A0P0XUG1 SUT3_ORYSJ,A0A0N7KRR6_ORYSJ,A0A0P0XTX0_ORYSJ,A0A0P0XUG1_ORYSJ SUT3 Os10g0404500 LOC_Os10g26470 OSJNBb0044I14.9,Os10g0404566 OSNPB_100404566,Os10g0404500 OSNPB_100404500,Os10g0404533 OSNPB_100404533 FUNCTION: Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides (By similarity). {ECO:0000250}. ENOG411E005 Q3E7Q9 GLYT6_ARATH Probable glycosyltransferase At5g25310 (EC 2.4.-.-) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18460606}. FUNCTION: May be involved in cell wall biosynthesis. ARA:AT5G25310-MONOMER; 2.4.-.- 55974 Probable glycosyltransferase At5g25310 (EC 2.4.-.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2145472; AT5G25310 glycosyltransferase At5g25310-like Os06g0176100 protein (Os06g0177200 protein),Os04g0109900 protein (Fragment) A0A0P0WT52,A0A0P0W5Z6 A0A0P0WT52_ORYSJ,A0A0P0W5Z6_ORYSJ Os06g0177200 Os06g0176100 OSNPB_060176100 OSNPB_060177200,Os04g0109900 OSNPB_040109900 ENOG411E001 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Male sterility protein Fatty acyl-CoA reductase (EC 1.2.1.84),Fatty acyl-CoA reductase (EC 1.2.1.84) (Fragment) Q7XRZ6,Q7XS02,A0A0P0W8X9,A0A0P0X4Y9,A0A0P0W8W2,A0A0N7KNG3 Q7XRZ6_ORYSJ,Q7XS02_ORYSJ,A0A0P0W8X9_ORYSJ,A0A0P0X4Y9_ORYSJ,A0A0P0W8W2_ORYSJ,A0A0N7KNG3_ORYSJ Os04g0354600 Os04g0354600 OsJ_14400 OSJNBb0002N06.11 OSNPB_040354600,OSJNBb0002N06.4 Os04g0353600 OSNPB_040353600,Os04g0355500 OSNPB_040355500,Os07g0416600 OSNPB_070416600,Os04g0354400 OSNPB_040354400,Os07g0489100 OSNPB_070489100 FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. {ECO:0000256|RuleBase:RU363097}. ENOG411E00W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML12 (Calmodulin-like protein 12),Os12g0446300 protein (Fragment) Q5ZD81,A0A0P0Y9X3 CML12_ORYSJ,A0A0P0Y9X3_ORYSJ CML12 Os01g0604500 LOC_Os01g41990 P0681B11.28,Os12g0446300 OSNPB_120446300 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E00V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_11 Os08g0106900 protein,Os04g0401400 protein (Fragment) A0A0N7KP53,A0A0P0W9V2 A0A0N7KP53_ORYSJ,A0A0P0W9V2_ORYSJ Os08g0106900 OSNPB_080106900,Os04g0401400 OSNPB_040401400 ENOG411E00U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR Os02g0586800 protein (Putative tetratricopeptide repeat (TPR)-containing protein) (cDNA clone:J023024G02, full insert sequence) Q6YY12 Q6YY12_ORYSJ Os02g0586800 Os02g0586800 OsJ_07307 OSJNBb0056I22.40 OSNPB_020586800 ENOG411E00T MTPC2,metal transport protein 5 Q6ICY4,F4J8M5 MTPC2_ARATH,F4J8M5_ARATH Metal tolerance protein C2 (AtMTPc2) (AtMTP5),Cation efflux family protein FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. 43815,30176 Metal tolerance protein C2 (AtMTPc2) (AtMTP5),Cation efflux family protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; zinc ion transmembrane transporter activity [GO:0005385]; regulation of sequestering of zinc ion [GO:0061088]; response to nematode [GO:0009624]; response to zinc ion [GO:0010043],integral component of membrane [GO:0016021]; cation transmembrane transporter activity [GO:0008324] locus:2099307; AT3G12100 metal tolerance protein Cation efflux family protein-like (Os02g0832700 protein) (cDNA clone:J013020D21, full insert sequence),Os02g0832700 protein (Fragment) Q6K961,A0A0P0VRX6 Q6K961_ORYSJ,A0A0P0VRX6_ORYSJ OJ1149_C12.26-1 Os02g0832700 OJ1282_E10.2-1 OSNPB_020832700,Os02g0832700 OSNPB_020832700 ENOG411E00S UBP24 Q9FPS3 UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.4.19.12) (Deubiquitinating enzyme 24) (AtUBP24) (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT4G30890-MONOMER; R-ATH-5656169;R-ATH-5689880; 3.4.19.12 60440 Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.4.19.12) (Deubiquitinating enzyme 24) (AtUBP24) (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) nucleus [GO:0005634]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2126649; AT4G30890 ubiquitin carboxyl-terminal hydrolase Os07g0661300 protein (Fragment) Q0D3X3 Q0D3X3_ORYSJ Os07g0661300 Os07g0661300 OSNPB_070661300 ENOG411E00R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metal transporter Metal transporter Nramp5 Q8H4H5 NRAM5_ORYSJ NRAMP5 Os07g0257200 LOC_Os07g15370 OJ1057_E05.110 FUNCTION: Probable metal transporter. {ECO:0000250}. ENOG411E00Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB POZ and MATH domain-containing protein Os08g0406600 protein (Putative speckle-type POZ protein) (cDNA clone:002-102-F03, full insert sequence),Os02g0309200 protein (Putative speckle-type POZ protein),Os11g0619800 protein (Fragment),BTB/POZ domain containing protein, expressed (Os11g0622600 protein),Os02g0311150 protein,Os02g0309500 protein,Os08g0406500 protein (Putative speckle-type POZ protein),BTB/POZ domain containing protein (Os11g0631100 protein),Os02g0310500 protein Q6Z9X9,Q6Z0V7,Q0IRL2,Q2R115,B9F591,A3A605,Q6Z9Y0,Q2R0V3,A0A0P0VI73 Q6Z9X9_ORYSJ,Q6Z0V7_ORYSJ,Q0IRL2_ORYSJ,Q2R115_ORYSJ,B9F591_ORYSJ,A3A605_ORYSJ,Q6Z9Y0_ORYSJ,Q2R0V3_ORYSJ,A0A0P0VI73_ORYSJ Os08g0406600 Os08g0406600 OSNPB_080406600 P0453D01.7,Os02g0309200 OsJ_06413 OSJNBb0026D20.28 OSNPB_020309200,Os11g0619800 OSNPB_110619800,Os11g0622600 LOC_Os11g40680 Os11g0622600 OsJ_34681 OSNPB_110622600,Os02g0311150 OsJ_06420 OSNPB_020311150,Os02g0309500 OsJ_06415 OSNPB_020309500,Os08g0406500 Os08g0406500 OsJ_27253 OSNPB_080406500 P0453D01.5,Os11g0631100 LOC_Os11g41300 OsJ_34527 OSNPB_110631100,Os02g0310500 OSNPB_020310500 ENOG411E00P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os06g0639200 protein A0A0N7KMH0 A0A0N7KMH0_ORYSJ Os06g0639200 OSNPB_060639200 ENOG411E00Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os01g0794800 protein (Putative subtilisin-like serine protease) (cDNA clone:001-116-H07, full insert sequence),Os01g0795000 protein (Subtilisin-like serine proteinase),Os01g0794800 protein (Subtilisin-like serine proteinase-like protein),Os01g0795100 protein Q8RVA0,Q5ZBR8,Q5ZBS1,A0A0P0V984 Q8RVA0_ORYSJ,Q5ZBR8_ORYSJ,Q5ZBS1_ORYSJ,A0A0P0V984_ORYSJ P0684C02.23-1 P0699H05.3-1 Os01g0794800 OSNPB_010794800,Os01g0795000 Os01g0795000 OSNPB_010795000 P0699H05.5,P0699H05.3-2 Os01g0794800 P0684C02.23-2 OSNPB_010794800,Os01g0795100 OSNPB_010795100 ENOG411E00Y PNSB2,PnsB2 Q94AQ8,F4I890,F4I891 PNSB2_ARATH,F4I890_ARATH,F4I891_ARATH Photosynthetic NDH subunit of subcomplex B 2, chloroplastic (Protein PnsB2) (NAD(P)H DEHYDROGENASE SUBUNIT 45) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 2),NDH-dependent cyclic electron flow 1 DISRUPTION PHENOTYPE: Malfunction of the NDH complex (PubMed:18974055, PubMed:18785996). H(2)O(2) accumulation in Dark-Light transition (PubMed:18974055). {ECO:0000269|PubMed:18785996, ECO:0000269|PubMed:18974055}. Decreased post-illumination chlorophyll fluorescence; No other phenotypes mentioned-E. Aro-2009 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 38006,40481,34285 Photosynthetic NDH subunit of subcomplex B 2, chloroplastic (Protein PnsB2) (NAD(P)H DEHYDROGENASE SUBUNIT 45) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 2),NDH-dependent cyclic electron flow 1 chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; carbohydrate binding [GO:0030246]; catalytic activity [GO:0003824]; carbohydrate metabolic process [GO:0005975]; photosynthetic electron transport in photosystem I [GO:0009773]; transport [GO:0006810],chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; carbohydrate binding [GO:0030246]; catalytic activity [GO:0003824]; carbohydrate metabolic process [GO:0005975]; photosynthetic electron transport in photosystem I [GO:0009773],carbohydrate binding [GO:0030246]; catalytic activity [GO:0003824]; carbohydrate metabolic process [GO:0005975] locus:2010771; AT1G64770 NA Expressed protein (Os03g0158300 protein) (cDNA clone:J013073D03, full insert sequence) Q10RI6 Q10RI6_ORYSJ LOC_Os03g06230 Os03g0158300 OSNPB_030158300 ENOG411E00X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRC Growth-regulating factor 9 (OsGRF9) (Transcription activator GRF9) Q9FRG8 GRF9_ORYSJ GRF9 Os03g0674700 LOC_Os03g47140 OsJ_12074 OSJNBa0035I24.1 OSJNBb0009F04 FUNCTION: Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. ENOG411E00G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Sec3 Expressed protein (Os11g0276000 protein) (cDNA clone:J023029D06, full insert sequence) Q53Q77 Q53Q77_ORYSJ Os11g0276000 LOC_Os11g17600 Os11g0276000 OsJ_33622 OSNPB_110276000 ENOG411E00F STN7 Q9S713 STT7_ARATH Serine/threonine-protein kinase STN7, chloroplastic (EC 2.7.11.1) (Protein STATE TRANSITION 7) (Stt7 homolog) FUNCTION: Serine/threonine protein kinase required for state transition by phosphorylating light-harvesting complex II outer antennae (LCHII). State transition plays a central role in response to environmental changes and allows to adjust to changing light conditions via the redistribution of light excitation energy between photosystem II (PSII) and photosystem I (PSI). Phosphorylates the minor light harvesting protein LHCB4.2/CP29 and is involved in the light-dependent phosphorylation of TSP9. Acts as a key component of the long-term response (LTR) signaling pathway. Mediates phosphorylation-dependent PTAC16 subcellular localization to regulate plastid gene expression (PubMed:22616989). {ECO:0000269|PubMed:15729347, ECO:0000269|PubMed:16237446, ECO:0000269|PubMed:16897465, ECO:0000269|PubMed:19113838, ECO:0000269|PubMed:19706797, ECO:0000269|PubMed:22616989}. 2.7.11.1 63252 Serine/threonine-protein kinase STN7, chloroplastic (EC 2.7.11.1) (Protein STATE TRANSITION 7) (Stt7 homolog) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; thylakoid membrane [GO:0042651]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; circadian rhythm [GO:0007623]; photosynthetic acclimation [GO:0009643]; regulation of photosynthesis, light reaction [GO:0042548] locus:2205465; AT1G68830 Serine threonine-protein kinase Os05g0549100 protein Q0DG76,A0A0P0WQL8 Q0DG76_ORYSJ,A0A0P0WQL8_ORYSJ Os05g0549100 Os05g0549100 OsJ_19443 OSNPB_050549100,Os05g0549100 OSNPB_050549100 ENOG411E00E TPR1 Q9M0B2,Q94F21,F4JQB2 Q9M0B2_ARATH,Q94F21_ARATH,F4JQB2_ARATH AT4G30480 protein (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein AT4g30480),At4g30480 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein 30926,23134,17833 AT4G30480 protein (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein AT4g30480),At4g30480 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein Hsp90 protein binding [GO:0051879] locus:2118776; AT4G30480 Tetratricopeptide repeat protein Os10g0486900 protein (TPR Domain containing protein, expressed) (cDNA clone:001-123-D11, full insert sequence) Q7XD86 Q7XD86_ORYSJ LOC_Os10g34540 Os10g0486900 OSNPB_100486900 ENOG411E00D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30S ribosomal protein 2 NA NA NA NA NA NA NA ENOG411E00A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gal-bind_lectin NA NA NA NA NA NA NA ENOG411E00N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldehyde dehydrogenase family Os01g0591300 protein (Putative cytosolic aldehyde dehydrogenase RF2D),Os01g0591300 protein (Fragment) Q94JC6,A0A0P0V4Q5 Q94JC6_ORYSJ,A0A0P0V4Q5_ORYSJ Os01g0591300 OSNPB_010591300 P0710A02.8,Os01g0591300 OSNPB_010591300 ENOG411E00M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyruvate kinase Pyruvate kinase (EC 2.7.1.40),Pyruvate kinase (EC 2.7.1.40) (Fragment) Q2R8U5,A0A0N7KSM3 Q2R8U5_ORYSJ,A0A0N7KSM3_ORYSJ Os11g0216000 LOC_Os11g10980 Os11g0216000 OsJ_33369 OSNPB_110216000,Os11g0216000 OSNPB_110216000 ENOG411E00J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os12g0289800 protein A0A0N7KTW7 A0A0N7KTW7_ORYSJ Os12g0289800 OSNPB_120289800 ENOG411EH06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rubredoxin NA NA NA NA NA NA NA ENOG411EH05 Q94AQ3 Q94AQ3_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein) 9936 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein) lipid transport [GO:0006869] locus:2008139; AT1G48750 Lipid transfer protein NA NA NA NA NA NA NA ENOG411EH0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EH0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH0G Q9FJZ0 Q9FJZ0_ARATH Uncharacterized protein At5g66490 (Uncharacterized protein At5g66490/K1F13_15) 12259 Uncharacterized protein At5g66490 (Uncharacterized protein At5g66490/K1F13_15) plasma membrane [GO:0005886] locus:2154950; AT5G66490 NA NA NA NA NA NA NA NA ENOG411EH0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0626900 protein Q67VR3 Q67VR3_ORYSJ Os06g0626900 OSJNBa0072A21.37 OSNPB_060626900 P0530H05.8 ENOG411EH0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH0A RGF9 Q9FGF6 RGF9_ARATH Root meristem growth factor 9 (AtRGF9) FUNCTION: Maintains the postembryonic root stem cell niche. {ECO:0000269|PubMed:20798316}. 8987 Root meristem growth factor 9 (AtRGF9) extracellular space [GO:0005615]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; lateral root development [GO:0048527]; positive gravitropism [GO:0009958]; positive regulation of cell proliferation [GO:0008284]; regulation of auxin polar transport [GO:2000012]; regulation of protein localization [GO:0032880]; root system development [GO:0022622] locus:2176060; AT5G64770 NA NA NA NA NA NA NA NA ENOG411EH0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411EH0X AGP3 Q9ZT17 AGP3_ARATH Classical arabinogalactan protein 3 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 13621 Classical arabinogalactan protein 3 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed at a low level in roots. {ECO:0000269|PubMed:11006345}. locus:2140099; AT4G40090 NA NA NA NA NA NA NA NA ENOG411EH0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EH0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0549050 protein,Os06g0549950 protein (Fragment),Os06g0549666 protein (Fragment),Os06g0549525 protein (Fragment) A0A0N7KM92,A0A0P0WXR4,A0A0N7KM93,A0A0P0WXY4 A0A0N7KM92_ORYSJ,A0A0P0WXR4_ORYSJ,A0A0N7KM93_ORYSJ,A0A0P0WXY4_ORYSJ Os06g0549050 OSNPB_060549050,Os06g0549950 OSNPB_060549950,Os06g0549666 OSNPB_060549666,Os06g0549525 OSNPB_060549525 ENOG411EH0U T27I15_190,T27I15_180 Q9LEW6,Q9LEW7 Q9LEW6_ARATH,Q9LEW7_ARATH Putative endonuclease or glycosyl hydrolase (Uncharacterized protein At3g61100) (Uncharacterized protein At3g61100/T27I15_190) (Uncharacterized protein T27I15_190),At3g61090 (Putative endonuclease or glycosyl hydrolase) (Uncharacterized protein T27I15_180) 18892,20453 Putative endonuclease or glycosyl hydrolase (Uncharacterized protein At3g61100) (Uncharacterized protein At3g61100/T27I15_190) (Uncharacterized protein T27I15_190),At3g61090 (Putative endonuclease or glycosyl hydrolase) (Uncharacterized protein T27I15_180) peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468] locus:2101032;,locus:2101027; AT3G61100,AT3G61090 Pfam:DUF88 NA NA NA NA NA NA NA ENOG411EH0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411EH0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA gyrase C-terminal domain beta-propeller NA NA NA NA NA NA NA ENOG411EG8Y ATTI3,ATTI2 O22867,O22866 DF194_ARATH,DF193_ARATH Defensin-like protein 194 (Trypsin inhibitor ATTI-3),Defensin-like protein 193 (Trypsin inhibitor ATTI-2) 9408,9660 Defensin-like protein 194 (Trypsin inhibitor ATTI-3),Defensin-like protein 193 (Trypsin inhibitor ATTI-2) extracellular region [GO:0005576]; ion channel inhibitor activity [GO:0008200]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],extracellular region [GO:0005576]; ion channel inhibitor activity [GO:0008200]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:2058256; AT2G43530,AT2G43520 Scorpion toxin-like domain NA NA NA NA NA NA NA ENOG411EI53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os01g0287400 protein (Fragment) A0A0P0V182 A0A0P0V182_ORYSJ Os01g0287400 OSNPB_010287400 ENOG411EI52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0661800 protein) Q2R027 Q2R027_ORYSJ Os11g0661800 LOC_Os11g43990 Os11g0661800 OSNPB_110661800 ENOG411E0X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxidoreductase family C-terminal alpha/beta domain NA NA NA NA NA NA NA ENOG411EBNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EBNI LEAF AND FLOWER RELATED O81069,C0LGQ7,O81067,A0A1P8BFK6,A0A1P8B3R2,A0A1P8AX40 Y2899_ARATH,Y4245_ARATH,O81067_ARATH,A0A1P8BFK6_ARATH,A0A1P8B3R2_ARATH,A0A1P8AX40_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At4g20450 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein (Putative receptor-like protein kinase),Leucine-rich repeat protein kinase family protein 2.7.11.1 98756,100692,87288,75615,98787,83422 Probable leucine-rich repeat receptor-like protein kinase At2g28990 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At4g20450 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein (Putative receptor-like protein kinase),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2066158;,locus:2128625;,locus:2066143; AT2G28990,AT4G20450,AT2G28970 STYKc NA NA NA NA NA NA NA ENOG411EBNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulase (glycosyl hydrolase family 5) NA NA NA NA NA NA NA ENOG411EBNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MMPL family NA NA NA NA NA NA NA ENOG411EBNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EBNE HKL1 Q56XE8,A0A1P8ASQ8 HXK4_ARATH,A0A1P8ASQ8_ARATH Hexokinase-4 (EC 2.7.1.1),Phosphotransferase (EC 2.7.1.-) FUNCTION: Fructose and glucose phosphorylating enzyme. May be involved in the phosphorylation of glucose during the export from mitochondrion to cytosol (By similarity). {ECO:0000250}. ARA:AT3G20040-MONOMER; R-ATH-170822;R-ATH-6798695;R-ATH-70171; 2.7.1.1,2.7.1.- 54955,46700 Hexokinase-4 (EC 2.7.1.1),Phosphotransferase (EC 2.7.1.-) cytosol [GO:0005829]; integral component of mitochondrial outer membrane [GO:0031307]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glucose binding [GO:0005536]; mannokinase activity [GO:0019158]; cellular glucose homeostasis [GO:0001678]; glycolytic process [GO:0006096],cell [GO:0005623]; ATP binding [GO:0005524]; glucose binding [GO:0005536]; hexokinase activity [GO:0004396]; cellular glucose homeostasis [GO:0001678]; glycolytic process [GO:0006096] locus:2087590; AT3G20040 Hexokinase NA NA NA NA NA NA NA ENOG411EBNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STAS domain Os03g0196000 protein (Putative sulfate transporter) (Sulfate transporter 1.2, putative, expressed) Q8H7X4 Q8H7X4_ORYSJ Os03g0196000 LOC_Os03g09980 Os03g0196000 OSJNBa0064E16.3 OSNPB_030196000 ENOG411EBNB RLP28,RLP22,RLP41,RLP42,RLP25,RLP24,RLP23,RLP26,RLP20,RLP39,RLP40 O49325,Q0WRZ8,Q9LJS2,O48851,Q9LJS0,O48763,O49329,O48849,O49328,Q9SKK5,A0A1I9LTP5,A0A1I9LR86,F4J7T6,F4J7T9 O49325_ARATH,Q0WRZ8_ARATH,Q9LJS2_ARATH,O48851_ARATH,Q9LJS0_ARATH,O48763_ARATH,O49329_ARATH,O48849_ARATH,O49328_ARATH,Q9SKK5_ARATH,A0A1I9LTP5_ARATH,A0A1I9LR86_ARATH,F4J7T6_ARATH,F4J7T9_ARATH Putative leucine-rich repeat disease resistance protein (Receptor like protein 28),Disease resistance like protein (Receptor like protein 22),Leucine-rich repeat disease resistance protein-like (Receptor like protein 41),Putative disease resistance protein (Receptor like protein 22),Leucine-rich repeat disease resistance protein-like (Receptor like protein 42),Receptor like protein 25 (Similar to disease resistance protein (Cf-2.2)),Putative leucine-rich repeat disease resistance protein (Receptor like protein 24),Putative disease resistance protein (Receptor like protein 23),Putative leucine-rich repeat disease resistance protein (Receptor like protein 26),Putative disease resistance protein (Receptor like protein 20),Receptor like protein 41,Receptor like protein 39,Receptor like protein 40 FUNCTION: May be involved in ABA-induced senescence responses. {ECO:0000269|PubMed:18434605, ECO:0000269|PubMed:19704533}.,FUNCTION: Recognizes fungal (e.g. B.cinerea and A.niger) endopolygalacturonases (PGs, e.g. BcPG3, BcPG2, BcPG4, BcPG6 and AnPGB) and acts as a microbe-associated molecular pattern (MAMP) receptor to mediate defense response against fungi (e.g. B.cinerea) and oomycetes (e.g. H.arabidopsidis). Functionality seems to depend on the presence of the receptor kinase SOBIR1 as an adapter protein. {ECO:0000269|PubMed:24259685}.,FUNCTION: Involved in the perception of necrosis and ethylene-inducing peptide 1-like proteins (NLPs), that act as extracellular signals mediating immune activation. Component of the RLP23-SOBIR1-BAK1 complex that mediates NLP-triggered immunity. {ECO:0000269|PubMed:27251392}. 83137,65679,96918,85762,98439,23953,95706,98482,89117,75187,100539,101125,97449,101289 Putative leucine-rich repeat disease resistance protein (Receptor like protein 28),Disease resistance like protein (Receptor like protein 22),Leucine-rich repeat disease resistance protein-like (Receptor like protein 41),Putative disease resistance protein (Receptor like protein 22),Leucine-rich repeat disease resistance protein-like (Receptor like protein 42),Receptor like protein 25 (Similar to disease resistance protein (Cf-2.2)),Putative leucine-rich repeat disease resistance protein (Receptor like protein 24),Putative disease resistance protein (Receptor like protein 23),Putative leucine-rich repeat disease resistance protein (Receptor like protein 26),Putative disease resistance protein (Receptor like protein 20),Receptor like protein 41,Receptor like protein 39,Receptor like protein 40 integral component of membrane [GO:0016021] locus:2046535;,locus:2046397;,locus:2086974;,locus:2086979;,locus:2046500;,locus:2046515;,locus:2046357;,locus:2046600;,locus:2040035;,locus:2087253;,locus:2829370; AT2G33080,AT2G32660,AT3G25010,AT3G25020,AT2G33030,AT2G33020,AT2G32680,AT2G33050,AT2G25440,AT3G24900,AT3G24982 Receptor like protein NA NA NA NA NA NA NA ENOG411EBNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E0WF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain Os03g0424000 protein (Fragment) A0A0P0VYT4 A0A0P0VYT4_ORYSJ Os03g0424000 OSNPB_030424000 ENOG411E81P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0390000 protein (Fragment) A0A0P0XUH1 A0A0P0XUH1_ORYSJ Os10g0390000 OSNPB_100390000 ENOG411EDS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDS8 MHK7.13 F4KIT4 F4KIT4_ARATH Glycosyltransferase (Nucleotide-diphospho-sugar transferase family protein) 36977 Glycosyltransferase (Nucleotide-diphospho-sugar transferase family protein) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; transferase activity [GO:0016740]; RNA modification [GO:0009451] locus:2164476; AT5G40900 Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EDS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: kelch domain containing 3 NA NA NA NA NA NA NA ENOG411E81N A8MS78 Y1583_ARATH Uncharacterized protein At1g05835 14221 Uncharacterized protein At1g05835 locus:4010713414; AT1G05835 Inherit from KOG: Set domain NA NA NA NA NA NA NA ENOG411E600 SAUR42 Q8S8L5 Q8S8L5_ARATH Auxin-responsive family protein (Expressed protein) (SAUR-like auxin-responsive protein family) 14407 Auxin-responsive family protein (Expressed protein) (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:505006276; AT2G28085 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E81D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0208900 protein A0A0P0W7E6 A0A0P0W7E6_ORYSJ Os04g0208900 OSNPB_040208900 ENOG411EDSN VPS2.2 Q0WTY4 VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2 (AtVPS2-2) (Charged multivesicular body protein 2 homolog 2) (ESCRT-III complex subunit VPS2 homolog 2) FUNCTION: Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo (By similarity). {ECO:0000250}. R-ATH-1632852;R-ATH-917729; 24305 Vacuolar protein sorting-associated protein 2 homolog 2 (AtVPS2-2) (Charged multivesicular body protein 2 homolog 2) (ESCRT-III complex subunit VPS2 homolog 2) ESCRT III complex [GO:0000815]; protein transport [GO:0015031]; vacuolar transport [GO:0007034] locus:2163396; AT5G44560 Snf7 NA NA NA NA NA NA NA ENOG411E602 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EDSM F24B22.40 Q9M395 Q9M395_ARATH Concanavalin A-like lectin family protein (Uncharacterized protein At3g54080) (Uncharacterized protein F24B22.40) 39553 Concanavalin A-like lectin family protein (Uncharacterized protein At3g54080) (Uncharacterized protein F24B22.40) integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246] locus:2080255; AT3G54080 Legume lectin domain NA NA NA NA NA NA NA ENOG411E607 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os09g0431900 protein A0A0P0XNV4 A0A0P0XNV4_ORYSJ Os09g0431900 OSNPB_090431900 ENOG411EDSJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDSK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E608 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDSI F5D14.2 Q9LQN3,Q8VZ11,A0A1P8B0U9 Q9LQN3_ARATH,Q8VZ11_ARATH,A0A1P8B0U9_ARATH At1g32260 (Envelope glycoprotein) (F5D14.2 protein) (Uncharacterized protein F27G20_13),Envelope glycoprotein (Uncharacterized protein At2g35480),Envelope glycoprotein 23694,23009,19290 At1g32260 (Envelope glycoprotein) (F5D14.2 protein) (Uncharacterized protein F27G20_13),Envelope glycoprotein (Uncharacterized protein At2g35480),Envelope glycoprotein viral envelope [GO:0019031] locus:2028321;,locus:2062384; AT1G32260,AT2G35480 NA NA NA NA NA NA NA NA ENOG411EDSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411EDSU MQJ2.16 Q9FGG7,Q501H6,B3H4S2 Q9FGG7_ARATH,Q501H6_ARATH,B3H4S2_ARATH Protein kinase superfamily protein (Similarity to receptor-like protein kinase),At5g58540 (Protein kinase superfamily protein),Protein kinase superfamily protein 53653,53311,38171 Protein kinase superfamily protein (Similarity to receptor-like protein kinase),At5g58540 (Protein kinase superfamily protein),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2171233; AT5G58540 STYKc NA NA NA NA NA NA NA ENOG411E7DP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0499300 protein A0A0P0XPD4 A0A0P0XPD4_ORYSJ Os09g0499300 OSNPB_090499300 ENOG411E7DY BBX29 Q6NLH4 Q6NLH4_ARATH At5g54470 (B-box type zinc finger family protein) (Uncharacterized protein At5g54470) 23477 At5g54470 (B-box type zinc finger family protein) (Uncharacterized protein At5g54470) intracellular [GO:0005622]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409] locus:2147274; AT5G54470 BBOX Os08g0178800 protein Q0J7M0,A0A0P0XCG2 Q0J7M0_ORYSJ,A0A0P0XCG2_ORYSJ Os08g0178800 Os08g0178800 OSNPB_080178800,Os08g0178800 OSNPB_080178800 ENOG411E7DF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E7DG Q9FEF9,Q9SKT5 Q9FEF9_ARATH,Q9SKT5_ARATH At2g20820 (At2g20820/F5H14.21) (Uncharacterized protein At2g20820),Expressed protein 10052,11469 At2g20820 (At2g20820/F5H14.21) (Uncharacterized protein At2g20820),Expressed protein locus:2051420; AT2G20820 NA Expressed protein (Os03g0581800 protein) (cDNA clone:001-024-A09, full insert sequence) Q75ID5 Q75ID5_ORYSJ OJ1785_A05.8 Os03g0581800 OsJ_11546 OSNPB_030581800 ENOG411E7DA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E7DC Q9LYH6 Q9LYH6_ARATH ABC family ABC transporter, putative (DUF3511) (Uncharacterized protein At5g11970) (Uncharacterized protein F14F18_140) 12376 ABC family ABC transporter, putative (DUF3511) (Uncharacterized protein At5g11970) (Uncharacterized protein F14F18_140) plasma membrane [GO:0005886] locus:2143059; AT5G11970 Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411E7DJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CUE domain NA NA NA NA NA NA NA ENOG411E7D4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain OSJNBa0028I23.23 protein (Os04g0422200 protein) Q7XMF9 Q7XMF9_ORYSJ Os04g0422200 OsJ_14802 OSJNBa0028I23.23 OSNPB_040422200 ENOG411E7D6 Q9ZV64 Q9ZV64_ARATH Ubiquitin-like superfamily protein (Uncharacterized protein At2g32360) 20131 Ubiquitin-like superfamily protein (Uncharacterized protein At2g32360) locus:2062551; AT2G32360 NA NA NA NA NA NA NA NA ENOG411E7D1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STAS domain NA NA NA NA NA NA NA ENOG411EFNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0480050 protein (Fragment) A0A0P0XGU2 A0A0P0XGU2_ORYSJ Os08g0480050 OSNPB_080480050 ENOG411EFNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFNF F4HP85 F4HP85_ARATH Transmembrane protein 36324 Transmembrane protein integral component of membrane [GO:0016021] locus:2013174; AT1G19620 NA NA NA NA NA NA NA NA ENOG411EFND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFNN AEL2 Q9SR25 AEL2_ARATH Protein AE7-like 2 (MIP18 family protein At3g09380) FUNCTION: May play a role in chromosome segregation through establishment of sister chromatid cohesion (By similarity). Unable to complement ae7 mutants, and thus probably not involved in the cytosolic iron-sulfur assembly (CIA) pathway (PubMed:23104832). {ECO:0000250|UniProtKB:Q9D187, ECO:0000269|PubMed:23104832}. 16989 Protein AE7-like 2 (MIP18 family protein At3g09380) chromosome segregation [GO:0007059]; iron-sulfur cluster assembly [GO:0016226] AT3G09380 Domain of unknown function DUF59 NA NA NA NA NA NA NA ENOG411EFNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EFNQ SGO1,AtSGO1 F4J3S1,A0A1I9LQA4 SGO1_ARATH,A0A1I9LQA4_ARATH SHUGOSHIN 1 (AtSGO1),Shugoshin C terminus FUNCTION: Protects sister chromatid centromere cohesion in meiosis I but not through the protection of the cohesin SYN1 (PubMed:23884434). Required with SGO2 for full protection of centromeric cohesion during anaphase I (PubMed:24206843). Required to prevent precocious release of pericentromeric cohesins during meiosis (PubMed:24206843). Not necessary for the maintenance of the synaptonemal complex (SC) (PubMed:23884434). Not required for monopolar spindle orientation in meiosis I (PubMed:24506176). {ECO:0000269|PubMed:23884434, ECO:0000269|PubMed:24206843, ECO:0000269|PubMed:24506176}. MISCELLANEOUS: Knock-down mutants show meiotic defects, reduction in seed set and fertility, and premature separation of sister chromatids before meiosis II, but no defects in vegetative development or growth (PubMed:24206843, PubMed:23884434). The localization of SYN1 and ZYP1 are not affected (PubMed:23884434). Sgo1 and sgo2 double mutants are almost completely sterile and show a premature separation of sister chromatids at anaphase I (PubMed:24506176). {ECO:0000269|PubMed:23884434, ECO:0000269|PubMed:24206843, ECO:0000269|PubMed:24506176}.; MISCELLANEOUS: Shugoshin is Japanese for guardian spirit. {ECO:0000305|PubMed:24206843}. 63946,47354 SHUGOSHIN 1 (AtSGO1),Shugoshin C terminus chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; maintenance of meiotic sister chromatid cohesion [GO:0034090] locus:2075770; AT3G10440 Shugoshin C terminus NA NA NA NA NA NA NA ENOG411EFNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED NA NA NA NA NA NA NA ENOG411EFNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EFNT Q3E709,Q147K7,Q3EAM7,Q3EBT3 Q3E709_ARATH,Q147K7_ARATH,Q3EAM7_ARATH,Q3EBT3_ARATH Egg cell-secreted-like protein (DUF1278),At5g05770 (Egg cell-secreted-like protein (DUF1278)) 13009,13075,13117,12899 Egg cell-secreted-like protein (DUF1278),At5g05770 (Egg cell-secreted-like protein (DUF1278)) locus:504954846;,locus:505006689;,locus:504955577;,locus:1006230005; AT5G52965,AT5G52975,AT3G48675,AT2G27315 Pfam:DUF1278 NA NA NA NA NA NA NA ENOG411EFNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFNY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5'-AMP-activated protein kinase beta subunit interation domain NA NA NA NA NA NA NA ENOG411EFN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EFN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oleosin Os01g0643900 protein (cDNA clone:002-141-D10, full insert sequence) Q5VP68 Q5VP68_ORYSJ Os01g0643900 OsJ_02796 OSNPB_010643900 P0510C12.38 P0707D10.3 ENOG411EFN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0181300 protein Q0DK95 Q0DK95_ORYSJ Os05g0181300 Os05g0181300 OSNPB_050181300 ENOG411EFN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q94LE8 Q94LE8_ORYSJ Os03g0400200 Os03g28190 OSNPB_030400200 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EFN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0471300 protein) (cDNA clone:J013038N23, full insert sequence),Os03g0834800 protein,Os12g0125600 protein,Os12g0266700 protein,Os06g0345050 protein,Os03g0233600 protein,Os12g0231600 protein,Os02g0496400 protein B7EBF1,A0A0P0W5A1,A0A0P0Y6W0,A0A0P0Y8S9,A0A0P0WWL0,A0A0N7KGW2,A0A0N7KTS6,A0A0P0VJC8 B7EBF1_ORYSJ,A0A0P0W5A1_ORYSJ,A0A0P0Y6W0_ORYSJ,A0A0P0Y8S9_ORYSJ,A0A0P0WWL0_ORYSJ,A0A0N7KGW2_ORYSJ,A0A0N7KTS6_ORYSJ,A0A0P0VJC8_ORYSJ Os11g0471300 LOC_Os11g28184 OSNPB_110471300,Os03g0834800 OSNPB_030834800,Os12g0125600 OSNPB_120125600,Os12g0266700 OSNPB_120266700,Os06g0345050 OSNPB_060345050,Os03g0233600 OSNPB_030233600,Os12g0231600 OSNPB_120231600,Os02g0496400 OSNPB_020496400 ENOG411E3CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DV19 TSN1,TSN2 Q8VZG7,Q9FLT0 TSN1_ARATH,TSN2_ARATH Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-),Ribonuclease TUDOR 2 (AtTudor2) (TUDOR-SN protein 2) (EC 3.1.-.-) (100 kDa coactivator-like protein) DISRUPTION PHENOTYPE: Normal vegetative growth, flowering time and flower morphology (PubMed:20396901). Reduced expression of enzyme involved in GA biosynthesis leading to reduced levels of GA-4 (e.g. GA20OX3). Slower growth in salt conditions (PubMed:25205572). The double mutant tsn1 tsn2 exhibits severe alteration in germination, growth, and survival under high salinity stress. Reduced levels of stress-regulated mRNAs encoding secreted proteins (PubMed:20484005). Abnormal stress granules (SGs) and processing bodies (PBs) assembly accompanied by reduced uncapped RNAs levels in heat-stressed double mutant tsn1 tsn2 (PubMed:25736060). The double mutant tsn1 tsn2 is also showing enriched uncapping and subsequent degradation of mRNAs involved in stress adaptation (PubMed:26237081). {ECO:0000269|PubMed:20396901, ECO:0000269|PubMed:20484005, ECO:0000269|PubMed:25205572, ECO:0000269|PubMed:25736060, ECO:0000269|PubMed:26237081}.,DISRUPTION PHENOTYPE: Normal vegetative growth, flowering time and flower morphology, but delayed seed germination after vernalization (at 4 degrees Celsius); this phenotype is reversed by gibberellic acid (GA-3) but increased by paclobutrazol, a GA biosynthesis inhibitor. Reduced expression of enzyme involved in GA biosynthesis leading to reduced levels of GA-4 (e.g. GA20OX3) (PubMed:20396901). The double mutant tsn1 tsn2 exhibits severe alteration in germination, growth, and survival under high salinity stress. In normal conditions, moderate reduction in root growth due to cell elongation defect. Reduced levels of stress-regulated mRNAs encoding secreted proteins (PubMed:20484005). Abnormal stress granules (SGs) and processing bodies (PBs) assembly accompanied by reduced uncapped RNAs levels in heat-stressed double mutant tsn1 tsn2 (PubMed:25736060). The double mutant tsn1 tsn2 is also showing enriched uncapping and subsequent degradation of mRNAs involved in stress adaptation (PubMed:26237081). {ECO:0000269|PubMed:20396901, ECO:0000269|PubMed:20484005, ECO:0000269|PubMed:25736060, ECO:0000269|PubMed:26237081}. Double mutant displays only mild growth phenotypes under nonstress conditions but germination growth and survival are severely affected under high salinity stress.,Delayed germination. Exogenous GA3 can rescue the germination phenotype. Expression of AtGA20ox3 transcript is reduced in mutants. FUNCTION: Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress (PubMed:25736060). Essential for the integrity and function of cytoplasmic messenger ribonucleoprotein (mRNP) complexes called stress granules (SGs) and processing bodies (PBs), sites of post-transcriptional gene regulation during stress (e.g. salt and heat) (PubMed:25736060). Involved in gibberellic acid (GA) biosynthesis (PubMed:25205572). Essential for stress tolerance, probably by regulating mRNAs entering the secretory pathway (PubMed:20484005). Component of stress granules (SGs) that regulates growth under salt stress by modulating levels of GA20OX3 mRNA. Binds GA20OX3 mRNA (PubMed:25205572). May inhibit the degradation of mRNAs involved in stress adaptation (PubMed:26237081). {ECO:0000269|PubMed:20484005, ECO:0000269|PubMed:25205572, ECO:0000269|PubMed:25736060, ECO:0000269|PubMed:26237081}.,FUNCTION: Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress (PubMed:25736060). Essential for the integrity and function of cytoplasmic messenger ribonucleoprotein (mRNP) complexes called stress granules (SGs) and processing bodies (PBs), sites of post-transcriptional gene regulation during stress (e.g. salt and heat) (PubMed:25736060). Involved in gibberellic acid (GA) biosynthesis and seed germination (PubMed:20396901). Essential for stress tolerance, probably by regulating mRNAs entering the secretory pathway (PubMed:20484005). Component of stress granules (SGs) that regulates growth under salt stress by modulating levels of GA20OX3 mRNA. Binds GA20OX3 mRNA (By similarity). May inhibit the degradation of mRNAs involved in stress adaptation (PubMed:26237081). {ECO:0000250|UniProtKB:Q8VZG7, ECO:0000269|PubMed:20396901, ECO:0000269|PubMed:20484005, ECO:0000269|PubMed:25736060, ECO:0000269|PubMed:26237081}. 3.1.31.1; 3.1.-.- 108235,107742 Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-),Ribonuclease TUDOR 2 (AtTudor2) (TUDOR-SN protein 2) (EC 3.1.-.-) (100 kDa coactivator-like protein) cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; nuclear envelope [GO:0005635]; P-body [GO:0000932]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; RISC complex [GO:0016442]; mRNA binding [GO:0003729]; nuclease activity [GO:0004518]; RNA binding [GO:0003723]; cellular response to heat [GO:0034605]; gene silencing by RNA [GO:0031047]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397]; positive regulation of gibberellin biosynthetic process [GO:0010372]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; nuclear envelope [GO:0005635]; P-body [GO:0000932]; perinuclear region of cytoplasm [GO:0048471]; plasmodesma [GO:0009506]; RISC complex [GO:0016442]; mRNA binding [GO:0003729]; nuclease activity [GO:0004518]; RNA binding [GO:0003723]; cellular response to heat [GO:0034605]; gene silencing by RNA [GO:0031047]; gibberellin biosynthetic process [GO:0009686]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397]; positive regulation of gibberellin biosynthetic process [GO:0010372]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; seed germination [GO:0009845] DEVELOPMENTAL STAGE: In mature seeds, accumulates highly both in cotyledons and radicals. {ECO:0000269|PubMed:20396901}. TISSUE SPECIFICITY: Expressed in seeds, leaves, flowers, roots and siliques (at protein level) (PubMed:20396901, PubMed:20484005). Accumulates in the cap and elongation zone of the root apices (at protein level) (PubMed:20484005). {ECO:0000269|PubMed:20396901, ECO:0000269|PubMed:20484005}.,TISSUE SPECIFICITY: Mostly expressed in seeds, and, to a lower extent, in leaves, flowers, roots and siliques (at protein level) (PubMed:20396901, PubMed:20484005). Accumulates strongly in the cap and elongation zone of the root apices (at protein level) (PubMed:20484005). {ECO:0000269|PubMed:20396901, ECO:0000269|PubMed:20484005}. locus:2183359;,locus:2159218; AT5G07350,AT5G61780 Staphylococcal nuclease domain-containing protein Os02g0523500 protein (RNA binding protein) (RNA binding protein Rp120),Os02g0523500 protein (Fragment) Q6H547,A0A0N7KFE2 Q6H547_ORYSJ,A0A0N7KFE2_ORYSJ Os02g0523500 Os02g0523500 OSJNBa0047A17.32 OSNPB_020523500 P0415B12.4,Os02g0523500 OSNPB_020523500 ENOG411DV18 PILS4,PILS1,PILS3 Q9C9K4,F4HWB6,Q9C9K5,A0A1P8APP3 PILS4_ARATH,PILS1_ARATH,PILS3_ARATH,A0A1P8APP3_ARATH Protein PIN-LIKES 4 (Auxin efflux carrier-like protein 4),Protein PIN-LIKES 1 (Auxin efflux carrier-like protein 1),Protein PIN-LIKES 3 (Auxin efflux carrier-like protein 3),Auxin efflux carrier family protein FUNCTION: Involved in cellular auxin homeostasis by regulating auxin metabolism. Regulates intracellular auxin accumulation at the endoplasmic reticulum and thus auxin availability for nuclear auxin signaling. {ECO:0000305|PubMed:22504182}.,FUNCTION: Involved in cellular auxin homeostasis by regulating auxin metabolism. Regulates intracellular auxin accumulation at the endoplasmic reticulum and thus auxin availability for nuclear auxin signaling. {ECO:0000269|PubMed:22504182}. 45586,51877,42632,37720 Protein PIN-LIKES 4 (Auxin efflux carrier-like protein 4),Protein PIN-LIKES 1 (Auxin efflux carrier-like protein 1),Protein PIN-LIKES 3 (Auxin efflux carrier-like protein 3),Auxin efflux carrier family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transmembrane transport [GO:0055085],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; auxin-activated signaling pathway [GO:0009734]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in seedlings, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:22504182}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:22504182}.,TISSUE SPECIFICITY: Expressed in seedlings, rosette and cauline leaves, flowers and siliques. {ECO:0000269|PubMed:22504182}. locus:2011746;,locus:504956196;,locus:2011731; AT1G76530,AT1G20925,AT1G76520 auxin efflux Os09g0491740 protein (cDNA clone:J033028L15, full insert sequence) B7EM10 B7EM10_ORYSJ Os09g0491740 OSNPB_090491740 ENOG411DV15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os06g0707200 protein (Putative HGA1) (cDNA clone:001-027-C09, full insert sequence),Os02g0135500 protein (Putative HGA1) (cDNA clone:J013033I23, full insert sequence) Q5Z8T7,Q6Z0Z4 Q5Z8T7_ORYSJ,Q6Z0Z4_ORYSJ Os06g0707200 Os06g0707200 OsJ_22603 OSNPB_060707200 P0018H04.35 P0621D05.23,P0585B01.29-1 Os02g0135500 OSJNBa0081C13.2-1 OSNPB_020135500 ENOG411DV14 AERO1,AERO2,ERO2 Q9C7S7,Q7X9I4,F4IU09,F4IU11 ERO1_ARATH,ERO2_ARATH,F4IU09_ARATH,F4IU11_ARATH Endoplasmic reticulum oxidoreductin-1 (EC 1.8.4.-),Endoplasmic reticulum oxidoreductin-2 (EC 1.8.4.-),Endoplasmic reticulum oxidoreductins 2 FUNCTION: Essential oxidoreductase that oxidizes proteins in the endoplasmic reticulum to produce disulfide bonds. Acts by oxidizing directly PDI isomerase through a direct disulfide exchange. Does not act as a direct oxidant of folding substrate, but relies on PDI to transfer oxidizing equivalent. Does not oxidize all PDI related proteins, suggesting that it can discriminate between PDI and related proteins. Its reoxidation probably involves electron transfer to molecular oxygen via FAD. Acts independently of glutathione. May be responsible for a significant proportion of reactive oxygen species (ROS) in the cell, thereby being a source of oxidative stress (By similarity). {ECO:0000250}. 1.8.4.- 53830,53449,54459,54180 Endoplasmic reticulum oxidoreductin-1 (EC 1.8.4.-),Endoplasmic reticulum oxidoreductin-2 (EC 1.8.4.-),Endoplasmic reticulum oxidoreductins 2 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide isomerase activity [GO:0003756]; protein disulfide oxidoreductase activity [GO:0015035]; cellular protein modification process [GO:0006464]; protein folding in endoplasmic reticulum [GO:0034975]; protein maturation [GO:0051604],endoplasmic reticulum membrane [GO:0005789]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide isomerase activity [GO:0003756]; protein disulfide oxidoreductase activity [GO:0015035]; cellular protein modification process [GO:0006464]; protein folding in endoplasmic reticulum [GO:0034975],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide isomerase activity [GO:0003756] locus:2207031;,locus:2064925; AT1G72280,AT2G38960 Endoplasmic Endoplasmic oxidoreductin 1, putative, expressed (Os03g0733800 protein) (Putative endoplasmic reticulum oxidoreductin) Q6AVU2 Q6AVU2_ORYSJ OSJNBa0027J18.20 Os03g0733800 LOC_Os03g52340 OSNPB_030733800 ENOG411DV17 CIPK11 O22932 CIPKB_ARATH CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.11.1) (SNF1-related kinase 3.22) (SOS2-like protein kinase PKS5) (SOS3-interacting protein 4) DISRUPTION PHENOTYPE: Increased proton extrusion and resistance to high external pH. {ECO:0000269|PubMed:17483306}. FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Acts as a negative regulator of the plasma membrane proton pump AHA2 by preventing its interaction with 14-3-3 protein. {ECO:0000269|PubMed:17483306}. 2.7.11.1 49017 CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.11.1) (SNF1-related kinase 3.22) (SOS2-like protein kinase PKS5) (SOS3-interacting protein 4) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; protein phosphorylation [GO:0006468]; response to pH [GO:0009268] DEVELOPMENTAL STAGE: Expressed in hypocotyls and roots upon germination. As seedlings mature, detected in the vascular tissue of both the stem and leaf. {ECO:0000269|PubMed:17483306}. TISSUE SPECIFICITY: Expressed in roots and stems, but barely detectable in flowers and siliques. {ECO:0000269|PubMed:11402167, ECO:0000269|PubMed:17483306}. locus:2065781; AT2G30360 CBL-interacting serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DV16 RH8 Q8RXK6 RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 (EC 3.6.4.13) FUNCTION: ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping. {ECO:0000250}. R-ATH-430039; 3.6.4.13 57687 DEAD-box ATP-dependent RNA helicase 8 (EC 3.6.4.13) cytoplasmic stress granule [GO:0010494]; nucleolus [GO:0005730]; P-body [GO:0000932]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; cytoplasmic mRNA processing body assembly [GO:0033962]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; regulation of translation [GO:0006417]; RNA secondary structure unwinding [GO:0010501]; viral process [GO:0016032] locus:2127043; AT4G00660 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 12 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 6 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 8 (EC 3.6.4.13),Os10g0503700 protein (Fragment) Q109G2,Q7XMK8,Q6H7S2,A0A0P0XWE2,A0A0N7KS15 RH12_ORYSJ,RH6_ORYSJ,RH8_ORYSJ,A0A0P0XWE2_ORYSJ,A0A0N7KS15_ORYSJ Os10g0503700 LOC_Os10g35990 OsJ_32082 OSJNBb0073N24.12,Os04g0533000 LOC_Os04g45040 OsJ_15580 OSJNBb0039L24.10,Os02g0641800 LOC_Os02g42860 OJ1112_G03.6-1 OJ1112_G03.6-2 OsJ_07688,Os10g0503700 OSNPB_100503700 FUNCTION: ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping. {ECO:0000250}. ENOG411DV11 SWEET1 Q8L9J7,A0A1P8AX31 SWET1_ARATH,A0A1P8AX31_ARATH Bidirectional sugar transporter SWEET1 (AtSWEET1) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 1),Nodulin MtN3 family protein DISRUPTION PHENOTYPE: Impaired glucose transport activity. {ECO:0000269|PubMed:21107422}. FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. Can transport glucose, and, to a lower extent, mannose, fructose and galactose. {ECO:0000269|PubMed:21107422}. R-ATH-189200; 27268,22477 Bidirectional sugar transporter SWEET1 (AtSWEET1) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 1),Nodulin MtN3 family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; sugar transmembrane transporter activity [GO:0051119]; protein homooligomerization [GO:0051260],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] TISSUE SPECIFICITY: Mainly expressed in flowers. {ECO:0000269|PubMed:21107422}. locus:2026997; AT1G21460 bidirectional sugar transporter Bidirectional sugar transporter SWEET1a (OsSWEET1a),Bidirectional sugar transporter SWEET1b (OsSWEET1b) Q8RZQ8,Q60EC2 SWT1A_ORYSJ,SWT1B_ORYSJ SWEET1A Os01g0881300 LOC_Os01g65880 B1065E10.2-1 OsJ_04300 P0018C10.61-1,SWEET1B Os05g0426000 LOC_Os05g35140 OsJ_18606 OSJNBa0044P19.5 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. ENOG411DV10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine carboxypeptidase II-3-like NA NA NA NA NA NA NA ENOG411DV13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Aspartyl protease 37 (EC 3.4.23.-) Q7XV21 AP37_ORYSJ AP37 Os04g0448500 LOC_Os04g37570 OSJNBa0064H22.11 FUNCTION: Anther-specific aspartic protease involved in tapetal programmed cell death (PCD). Directly regulated by the transcription factor EAT1/DTD in anthers during tapetum PCD and degeneration. {ECO:0000269|PubMed:23385589}. ENOG411DV12 orf03 Q38955 Q38955_ARATH Orf03 protein (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At3g26580) 39939 Orf03 protein (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At3g26580) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2088812; AT3G26580 NA Os03g0428800 protein (Fragment) Q0DR06 Q0DR06_ORYSJ Os03g0428800 OSNPB_030428800 ENOG411DV1Y ARPC4 F4JUL9,F4JUL8 ARPC4_ARATH,F4JUL8_ARATH Actin-related protein 2/3 complex subunit 4 (Actin-related protein C4) (Arp2/3 complex 20 kDa subunit) (p20-ARC),Actin-related protein 2/3 complex subunit 4 DISRUPTION PHENOTYPE: Distorted trichomes and altered epidermal cell types. {ECO:0000269|PubMed:12913159, ECO:0000269|PubMed:19801398}. FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament (By similarity). Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. {ECO:0000250, ECO:0000269|PubMed:19801398}.,FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament. {ECO:0000256|PIRNR:PIRNR039100}. R-ATH-2029482;R-ATH-5663213; 19858,20700 Actin-related protein 2/3 complex subunit 4 (Actin-related protein C4) (Arp2/3 complex 20 kDa subunit) (p20-ARC),Actin-related protein 2/3 complex subunit 4 Arp2/3 protein complex [GO:0005885]; cell projection [GO:0042995]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament polymerization [GO:0030041]; Arp2/3 complex-mediated actin nucleation [GO:0034314],Arp2/3 protein complex [GO:0005885]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament organization [GO:0007015]; actin filament polymerization [GO:0030041]; actin nucleation [GO:0045010]; Arp2/3 complex-mediated actin nucleation [GO:0034314]; cell morphogenesis [GO:0000902] TISSUE SPECIFICITY: Expressed at low levels in all tissues with a relatively highest expression in inflorescences. {ECO:0000269|PubMed:12913159, ECO:0000269|PubMed:15086808}. locus:1008810312; AT4G14147 Actin-related protein 2 3 complex subunit Actin-related protein 2/3 complex subunit 4,Os03g0848300 protein (Fragment) Q852C5,A0A0P0W5Q5 Q852C5_ORYSJ,A0A0P0W5Q5_ORYSJ Os03g0848300 LOC_Os03g63090 Os03g0848300 OsJ_13363 OSJNBb0096M04.125 OSNPB_030848300,Os03g0848300 OSNPB_030848300 FUNCTION: Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament. {ECO:0000256|PIRNR:PIRNR039100}. ENOG411DV1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os09g0479500 protein (Putative PPR1),Os09g0479600 protein (Fragment),NB-ARC domain containing protein, expressed (Os10g0136100 protein) (cDNA clone:J033045O13, full insert sequence),NB-ARC domain containing protein, expressed (Os10g0136100 protein) (Putative disease resistance protein RPR1),Os08g0261000 protein (Putative RPR1h),NB-ARC domain containing protein, expressed (Os10g0358200 protein) (Putative disease resistant protein),Os11g0678400 protein,Os01g0521600 protein,Os08g0260800 protein Q652D6,Q0J0X0,Q10A58,Q9AYH9,Q6Z5Z6,Q8W2U9,A0A0P0Y5C9,A0A0P0V3E5,A0A0P0XDX7 Q652D6_ORYSJ,Q0J0X0_ORYSJ,Q10A58_ORYSJ,Q9AYH9_ORYSJ,Q6Z5Z6_ORYSJ,Q8W2U9_ORYSJ,A0A0P0Y5C9_ORYSJ,A0A0P0V3E5_ORYSJ,A0A0P0XDX7_ORYSJ Os09g0479500 Os09g0479500 OSNPB_090479500 P0463G11.15,Os09g0479600 OSNPB_090479600,Os10g0136100 LOC_Os10g04674 Os10g0136100 OSNPB_100136100,Os10g0136100 LOC_Os10g04674 OSJNBa0087H07.5 OSNPB_100136100,Os08g0261000 Os08g0261000 B1063H10.19 OSNPB_080261000,Os10g0358200 LOC_Os10g21400 OsJ_31211 OSJNBb0076H04.23 OSNPB_100358200,Os11g0678400 OSNPB_110678400,Os01g0521600 OSNPB_010521600,Os08g0260800 OSNPB_080260800 ENOG411DV1Z Q6IDC7 Q6IDC7_ARATH At1g77550 (Tubulin-tyrosine ligase) (Uncharacterized protein At1g77550) 97543 At1g77550 (Tubulin-tyrosine ligase) (Uncharacterized protein At1g77550) chloroplast [GO:0009507]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; cellular protein modification process [GO:0006464] locus:2204745; AT1G77550 tubulin--tyrosine ligase-like protein Os03g0179000 protein (Tubulin-tyrosine ligase family protein, expressed) Q10QY3 Q10QY3_ORYSJ Os03g0179000 LOC_Os03g08140 OSNPB_030179000 ENOG411DV1U Q9FGY4 FB341_ARATH F-box protein At5g49610 PATHWAY: Protein modification; protein ubiquitination. 41060 F-box protein At5g49610 protein ubiquitination [GO:0016567] locus:2157834; AT5G49610 f-box family NA NA NA NA NA NA NA ENOG411DV1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 71D11, putative, expressed (Os03g0741500 protein) (Putative cytochrome P450 protein) (cDNA clone:002-172-E02, full insert sequence),Os09g0275400 protein (Putative cytochrome P450) Q75KW3,Q6H4B5 Q75KW3_ORYSJ,Q6H4B5_ORYSJ OJ1365_D05.14 Os03g0741500 LOC_Os03g53060 OSNPB_030741500,Os09g0275400 OSJNBa0030K05.8 OSJNBb0012I09.21 OSNPB_090275400 ENOG411DV1W CSLA7,CSLA2,CSLA9,CSLA07 Q9ZQN8,Q9FNI7,Q9LZR3,A0A1P8B2I0,A0A1P8B2I3 CSLA7_ARATH,CSLA2_ARATH,CSLA9_ARATH,A0A1P8B2I0_ARATH,A0A1P8B2I3_ARATH Probable mannan synthase 7 (EC 2.4.1.-) (Cellulose synthase-like protein A7) (AtCslA7),Glucomannan 4-beta-mannosyltransferase 2 (EC 2.4.1.32) (Cellulose synthase-like protein A2) (AtCslA2) (Glucomannan synthase) (Mannan synthase 2),Glucomannan 4-beta-mannosyltransferase 9 (EC 2.4.1.32) (Cellulose synthase-like protein A9) (AtCslA9) (Glucomannan synthase) (Mannan synthase 9) (Protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 4),Cellulose synthase like DISRUPTION PHENOTYPE: Plants develop approximately half the number of lateral roots without affecting significantly aerial parts development, and are resistant to A.tumefaciens transformation. {ECO:0000269|PubMed:14612582}. Embryo defective; Male gametophyte defective-P. Dupree-2003 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall (PubMed:15647349). Required for synthesis of a cell wall polysaccharide essential for pollen tube growth, for cell wall structure, or for signaling during plant embryo development (PubMed:12586879). {ECO:0000269|PubMed:12586879, ECO:0000269|PubMed:15647349}.,FUNCTION: Possesses glucomannan synthase and mannan synthase activities in vitro. Mannan synthase consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000269|PubMed:15647349}.,FUNCTION: Possesses glucomannan synthase and mannan synthase activities in vitro. Mannan synthase consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall (PubMed:15647349, PubMed:17307900). Required for lateral root development (PubMed:14612582). {ECO:0000269|PubMed:14612582, ECO:0000269|PubMed:15647349, ECO:0000269|PubMed:17307900}. ARA:AT2G35650-MONOMER;,ARA:AT5G22740-MONOMER;,ARA:AT5G03760-MONOMER; 2.4.1.-,2.4.1.32 63795,61558,60919,55784,45898 Probable mannan synthase 7 (EC 2.4.1.-) (Cellulose synthase-like protein A7) (AtCslA7),Glucomannan 4-beta-mannosyltransferase 2 (EC 2.4.1.32) (Cellulose synthase-like protein A2) (AtCslA2) (Glucomannan synthase) (Mannan synthase 2),Glucomannan 4-beta-mannosyltransferase 9 (EC 2.4.1.32) (Cellulose synthase-like protein A9) (AtCslA9) (Glucomannan synthase) (Mannan synthase 9) (Protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 4),Cellulose synthase like Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucomannan 4-beta-mannosyltransferase activity [GO:0047259]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555]; mucilage biosynthetic process [GO:0010192]; mucilage metabolic process involved in seed coat development [GO:0048359],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucomannan 4-beta-mannosyltransferase activity [GO:0047259]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555]; DNA mediated transformation [GO:0009294]; response to bacterium [GO:0009617],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12586879}.,TISSUE SPECIFICITY: Expressed in cotyledons at the base of the hypocotyls, in root elongation zone, lateral root primordia, vascular system of young leaves, abscission zone of the pedicle,. {ECO:0000269|PubMed:14612582}. locus:2058729;,locus:2162494;,locus:2144638; AT2G35650,AT5G22740,AT5G03760 Glucomannan 4-beta-mannosyltransferase Probable glucomannan 4-beta-mannosyltransferase 9 (EC 2.4.1.32) (Cellulose synthase-like protein A9) (OsCslA9) (Glucomannan synthase) (Mannan synthase 9),Glucomannan 4-beta-mannosyltransferase 1 (EC 2.4.1.32) (Cellulose synthase-like protein A1) (OsCslA1) (Glucomannan-synthase 1) (Mannan synthase 1),Os02g0192500 protein (Fragment) Q67VS7,Q7PC76,A0A0P0VFW6 CSLA9_ORYSJ,CSLA1_ORYSJ,A0A0P0VFW6_ORYSJ CSLA9 Os06g0625700 LOC_Os06g42020 OsJ_021176 OsJ_22033 OSJNBa0072A21.15,CSLA1 Os02g0192500 LOC_Os02g09930 P0437H03.110 P0453H10.31,Os02g0192500 OSNPB_020192500 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q7PC76}.,FUNCTION: Possesses glucomannan synthase and mannan synthase activities in vitro. Mannan synthase consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000269|PubMed:17307900}. ENOG411DV1V T16B5.7 Q9S701 Q9S701_ARATH F20B24.21 (Hydroxyproline-rich glycoprotein family protein) (T16B5.7) 36975 F20B24.21 (Hydroxyproline-rich glycoprotein family protein) (T16B5.7) integral component of membrane [GO:0016021] locus:2019988; AT1G10790 NA Hydroxyproline-rich glycoprotein-like protein (Os09g0454200 protein) (cDNA clone:J023074A22, full insert sequence),Os09g0454200 protein (Fragment) Q67UA8,A0A0P0XMZ0 Q67UA8_ORYSJ,A0A0P0XMZ0_ORYSJ Os09g0454200 Os09g0454200 OSNPB_090454200 P0025H07.1 P0488D02.37,Os09g0454200 OSNPB_090454200 ENOG411DV1Q CBL9,CBL1 Q9LTB8,O81445,A0A1P8BBZ1,A0A1P8B7Z8,F4JP88 CNBL9_ARATH,CNBL1_ARATH,A0A1P8BBZ1_ARATH,A0A1P8B7Z8_ARATH,F4JP88_ARATH Calcineurin B-like protein 9,Calcineurin B-like protein 1 (SOS3-like calcium-binding protein 5),Calcineurin B-like protein 1 DISRUPTION PHENOTYPE: Hypersensitivity to abscisic acid in the early developmental stages. {ECO:0000269|PubMed:15208400}.,DISRUPTION PHENOTYPE: No visible phenotypes when grown under normal conditions, but increased sensitivity to low temperature. Hypersensitivity to paclobutrazol and to drought, glucose and salt stresses. {ECO:0000269|PubMed:14617077, ECO:0000269|PubMed:21600398, ECO:0000269|PubMed:23437128}. growth of the cbl1 cbl9 double mutant was significantly more inhibited than the growth of wild-type roots under low-K+ conditions. Double mutants lost water significantly more slowly than the ecotype hybrid plants. Hypersensitive to ABA treatmnet.,hypersensitive to ABA in the early developmental stages including seed germination and post-germination seedling growth. In addition seed germination in the mutant also showed increased sensitivity to inhibition by osmotic stress conditions produced by high concentrations of salt and mannitol. Further analyses indicated that increased stress sensitivity in the mutant may be a result of both ABA hypersensitivity and increased accumulation of ABA under the stress conditions.,Enhanced cold induction and reduced drought induction of stress genes. The mutant plants displayed less tolerance to salt and drought but enhanced tolerance to freezing. Sensitive to ABA, osmotic stress, and glucose-S. Luan-2004,Sensitive to drought and salt stress-J. Kudla-2003 FUNCTION: Acts as a calcium sensor involved in abscisic acid (ABA) signaling and stress-induced ABA biosynthesis pathways. Contributes to the regulation of early stress-related CBF/DREB transcription factors. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. May function as a negative regulator of stress and ABA responses. Mediates the activation of AKT1 by CIPK proteins (CIPK6, CIPK16, and CIPK23) in response to low potassium conditions and in the context of stomatal movement. Involved in the calcium-dependent regulation by CIPK26 of reactive oxygen species production by the NADPH oxidase RBOHF. The CBL9/CIPK3 complex acts in the regulation of abscisic acid response in seed germination. {ECO:0000269|PubMed:15208400, ECO:0000269|PubMed:16814720, ECO:0000269|PubMed:17898163, ECO:0000269|PubMed:17922773, ECO:0000269|PubMed:19825536, ECO:0000269|PubMed:23335733}.,FUNCTION: Acts as a calcium sensor involved in the signaling pathway during growth and development and in response to abiotic stresses. May function as a positive regulator of salt and drought responses and as a negative regulator of cold response. Contributes to the regulation of early stress-related CBF/DREB transcription factors. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Mediates the activation of AKT1 by CIPK proteins (CIPK6, CIPK16, and CIPK23) in response to low potassium conditions and in the context of stomatal movement. Involved in response to glucose and gibberellin during germination and seedling development and in response to cold stress. Involved in the calcium-dependent regulation by CIPK26 of reactive oxygen species production by the NADPH oxidase RBOHF. {ECO:0000269|PubMed:12194854, ECO:0000269|PubMed:12897256, ECO:0000269|PubMed:14617077, ECO:0000269|PubMed:16814720, ECO:0000269|PubMed:17898163, ECO:0000269|PubMed:17922773, ECO:0000269|PubMed:23335733, ECO:0000269|PubMed:23437128}. MISCELLANEOUS: Calcium binding of CBL1 is not required for membrane association and the endoplasmic reticulum-to-plasma membrane trafficking relies on a brefeldin A-insensitive pathway. Lipid modification is not required for interaction between CBL1 and CIPK1 (PubMed:18502848). {ECO:0000305|PubMed:18502848}. 24532,24554,19914,29536,20100 Calcineurin B-like protein 9,Calcineurin B-like protein 1 (SOS3-like calcium-binding protein 5),Calcineurin B-like protein 1 cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; abscisic acid-activated signaling pathway [GO:0009738]; pollen tube growth [GO:0009860]; response to water deprivation [GO:0009414],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; calcium ion binding [GO:0005509]; kinase binding [GO:0019900]; abscisic acid-activated signaling pathway [GO:0009738]; calcium-mediated signaling [GO:0019722]; pollen tube growth [GO:0009860]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],calcium ion binding [GO:0005509] TISSUE SPECIFICITY: Ubiquitous. Colocalized with CIPK23 in root tips and vascular bundles in the stem and the leaf, as well as in guard cells and root hairs. {ECO:0000269|PubMed:15208400, ECO:0000269|PubMed:16814720, ECO:0000269|PubMed:17922773}.,TISSUE SPECIFICITY: Preferentially expressed in stems, roots and siliques. Coexpressed with CIPK15/PKS3 in guard cells. Co-localized with CIPK23 in root tips and vascular bundles in the stem and the leaf, as well as in guard cells. {ECO:0000269|PubMed:10200328, ECO:0000269|PubMed:12194854, ECO:0000269|PubMed:16814720, ECO:0000269|PubMed:17922773}. locus:2152012;,locus:2129306; AT5G47100,AT4G17615 calcineurin b-like protein Calcineurin B-like protein 1 Q7XC27 CNBL1_ORYSJ CBL1 Os10g0564800 LOC_Os10g41510 OsJ_32489 FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DV1P TOR1L3 Q6NPR6 TORL3_ARATH TORTIFOLIA1-like protein 3 66617 TORTIFOLIA1-like protein 3 microtubule [GO:0005874]; microtubule binding [GO:0008017] locus:2154144; AT5G62580 microtubule-associated protein Os06g0244700 protein,Os02g0739900 protein A0A0P0WUJ7,A0A0P0VP92 A0A0P0WUJ7_ORYSJ,A0A0P0VP92_ORYSJ Os06g0244700 OSNPB_060244700,Os02g0739900 OSNPB_020739900 ENOG411DV1S Q9ZU27 PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965, mitochondrial Seedling and root growth sensitive to ABA-Z. Gong-2010 73879 Pentatricopeptide repeat-containing protein At1g51965, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; response to abscisic acid [GO:0009737]; RNA modification [GO:0009451]; RNA splicing [GO:0008380] locus:504956171; AT1G51965 Pentatricopeptide repeat-containing protein Os02g0226900 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6H5Z3 Q6H5Z3_ORYSJ Os02g0226900 Os02g0226900 OSNPB_020226900 P0495C02.30 P0620H05.3 ENOG411DV1R ICR4,ICR1 Q9M9F9,Q8LE98 ICR4_ARATH,ICR1_ARATH Interactor of constitutive active ROPs 4 (ROP-interactive partner 4),Interactor of constitutive active ROPs 1 (ROP-interactive partner 1) DISRUPTION PHENOTYPE: Plants have cubical adaxial epidermal pavement cells and show a loss of root stem-cell population due to a colapse of the root meristem. Pollen development is also compromised. {ECO:0000269|PubMed:17493810}. Short roots-S. Yalovsky-2007 FUNCTION: Acts as a scaffold, mediating interaction of ROPs with different proteins. {ECO:0000250}.,FUNCTION: Acts as a scaffold, mediating interaction of ROPs with different proteins. Required for primary and adventitious root maintenance, but not for their formation. Promotes the stabilization of ARAC11 on the plasma membrane of the pollen tube initiation site but not the activation of ARAC11. Regulates directionality of polar auxin transport, and is required for the formation of a stable auxin maximum and tip localized auxin gradient during embryogenesis, organogenesis, and meristem activity. Involved in exocytosis and in the recycling of PIN proteins back to the plasma membrane. {ECO:0000269|PubMed:17493810, ECO:0000269|PubMed:19825600, ECO:0000269|PubMed:20098722}. 36057,38358 Interactor of constitutive active ROPs 4 (ROP-interactive partner 4),Interactor of constitutive active ROPs 1 (ROP-interactive partner 1) nucleus [GO:0005634]; plasma membrane [GO:0005886]; pollen tube tip [GO:0090404]; regulation of auxin polar transport [GO:2000012] TISSUE SPECIFICITY: Expressed in mature and germinating pollen (PubMed:19825600). Expressed throughout the embryo but not in the hypophysis and quiescent center (QC). In roots, absent from the QC and the stem cells (PubMed:20098722). {ECO:0000269|PubMed:19825600, ECO:0000269|PubMed:20098722}. locus:2032095;,locus:2020342; AT1G78430,AT1G17140 interactor of constitutive active rops Os01g0757600 protein A0A0N7KDS3 A0A0N7KDS3_ORYSJ Os01g0757600 OSNPB_010757600 ENOG411DV1M PARP1 Q9ZP54 PARP1_ARATH Poly [ADP-ribose] polymerase 1 (PARP-1) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 1) (ADPRT-1) (Poly[ADP-ribose] synthase 1) FUNCTION: Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250}. ARA:AT2G31320-MONOMER; R-ATH-5685939;R-ATH-5696394;R-ATH-5696395;R-ATH-5696400; 2.4.2.30 111233 Poly [ADP-ribose] polymerase 1 (PARP-1) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 1) (ADPRT-1) (Poly[ADP-ribose] synthase 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA ligase (ATP) activity [GO:0003910]; NAD binding [GO:0051287]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; zinc ion binding [GO:0008270]; DNA ligation involved in DNA repair [GO:0051103]; DNA repair [GO:0006281]; lagging strand elongation [GO:0006273]; protein ADP-ribosylation [GO:0006471]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979] locus:2042511; AT2G31320 Involved in the base excision repair (BER) pathway by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection signaling pathway leading to the reparation of DNA strand breaks (By similarity) Poly [ADP-ribose] polymerase 1 (PARP-1) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 1) (ADPRT-1) (Poly[ADP-ribose] synthase 1),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) (Fragment) Q7EYV7,A0A0P0X523 PARP1_ORYSJ,A0A0P0X523_ORYSJ PARP1 Os07g0413700 LOC_Os07g23110 OsJ_23951 OSJNBa0077F02.113,Os07g0413700 OSNPB_070413700 FUNCTION: Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250}. ENOG411DV1N Q84K04,F4IIL7 Q84K04_ARATH,F4IIL7_ARATH RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At2g22120),RING/FYVE/PHD zinc finger superfamily protein 36132,40590 RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At2g22120),RING/FYVE/PHD zinc finger superfamily protein integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2055946; AT2G22120 zinc finger C3HC4 type family protein Os11g0604600 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:006-305-E09, full insert sequence) (cDNA clone:J033091P05, full insert sequence) Q2R1H8 Q2R1H8_ORYSJ Os11g0604600 LOC_Os11g39130 Os11g0604600 OsJ_34410 OSNPB_110604600 ENOG411DV1I VIP4 Q9FNQ0,F4K204 VIP4_ARATH,F4K204_ARATH Protein LEO1 homolog (Protein VERNALIZATION INDEPENDENCE 4),Leo1-like family protein DISRUPTION PHENOTYPE: Early flowering, defects in floral morphology in whorls 1-3, but fully fertile flowers (PubMed:12207655). Reduced seed dormancy and increased germination rate of freshly harvested seeds (PubMed:21799800). {ECO:0000269|PubMed:12207655, ECO:0000269|PubMed:21799800}. Early flowering in both LD and SD and in the Col genetic background also cause the leaf and flower phenotypes that are observed in elf7 and elf8. Early flowering; Slightly altered flower morphology-S. Van Nocker-2002 FUNCTION: Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3) (PubMed:20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressor and MADS box gene FLC (PubMed:12207655). Involved in the control of seed dormancy and germination (PubMed:21799800). {ECO:0000269|PubMed:12207655, ECO:0000269|PubMed:20363855, ECO:0000269|PubMed:21799800}. 71758,71588 Protein LEO1 homolog (Protein VERNALIZATION INDEPENDENCE 4),Leo1-like family protein Cdc73/Paf1 complex [GO:0016593]; cytosol [GO:0005829]; nucleus [GO:0005634]; RNA polymerase II C-terminal domain phosphoserine binding [GO:1990269]; flower development [GO:0009908]; histone modification [GO:0016570]; negative regulation of flower development [GO:0009910]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription elongation from RNA polymerase II promoter [GO:0006368]; vernalization response [GO:0010048],Cdc73/Paf1 complex [GO:0016593]; histone modification [GO:0016570]; transcription elongation from RNA polymerase II promoter [GO:0006368] TISSUE SPECIFICITY: Expressed in roots, shoot apices, stems, cauline leaves, inflorescence apices and flowers. {ECO:0000269|PubMed:12207655}. locus:2159466; AT5G61150 Leo1-like protein Leo1, expressed (Os12g0579000 protein) (cDNA clone:002-108-C04, full insert sequence),Os07g0109600 protein (Fragment),Os03g0756500 protein (Fragment) Q2QN51,Q0D934,A0A0N7KI28 Q2QN51_ORYSJ,Q0D934_ORYSJ,A0A0N7KI28_ORYSJ LOC_Os12g38970 Os12g0579000 OsJ_36649 OSNPB_120579000,Os07g0109600 Os07g0109600 OSNPB_070109600,Os03g0756500 OSNPB_030756500 ENOG411DV1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA indole-3-glycerol phosphate synthase Os09g0255400 protein (Putative indole-3-glycerol phosphate synthase) (cDNA clone:001-026-D08, full insert sequence),Os09g0255400 protein (Putative indole-3-glycerol phosphate synthase) (cDNA clone:J023092E01, full insert sequence) Q6K306,Q6K307 Q6K306_ORYSJ,Q6K307_ORYSJ Os09g0255400 OSJNBb0066C12.38-2 OSNPB_090255400,Os09g0255400 OsJ_28557 OSJNBb0066C12.38-1 OSNPB_090255400 ENOG411DV1K T5P19_80 Q9SHB0,Q9LXZ7,A0A1P8AXJ4 Q9SHB0_ARATH,Q9LXZ7_ARATH,A0A1P8AXJ4_ARATH Import inner membrane translocase subunit (Uncharacterized protein At2g40800) (Uncharacterized protein At2g40800; T7D17.2),At3g56430 (Import inner membrane translocase subunit) (Uncharacterized protein T5P19_80),Import inner membrane translocase subunit 41737,48534,33919 Import inner membrane translocase subunit (Uncharacterized protein At2g40800) (Uncharacterized protein At2g40800; T7D17.2),At3g56430 (Import inner membrane translocase subunit) (Uncharacterized protein T5P19_80),Import inner membrane translocase subunit integral component of membrane [GO:0016021]; mitochondrion [GO:0005739],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuole [GO:0005773],integral component of membrane [GO:0016021] locus:2064839;,locus:2102599; AT2G40800,AT3G56430 NA Os01g0168300 protein (cDNA clone:001-119-E03, full insert sequence) (p0028E10.18 protein) Q9AS74 Q9AS74_ORYSJ P0028E10.18 Os01g0168300 OJ1276_B06.17 OsJ_00525 OSNPB_010168300 ENOG411DV1J O22799,A0A1P8AYF9,A0A1P8AYF0 Y2349_ARATH,A0A1P8AYF9_ARATH,A0A1P8AYF0_ARATH Uncharacterized protein At2g33490,Hydroxyproline-rich glycoprotein family protein 69381,68955,54131 Uncharacterized protein At2g33490,Hydroxyproline-rich glycoprotein family protein plasma membrane [GO:0005886] locus:2051058; AT2G33490 Hydroxyproline-rich glycoprotein family protein Hydroxyproline-rich glycoprotein-like (Os02g0515200 protein),Hydroxyproline-rich glycoprotein-like (Os02g0515200 protein) (cDNA clone:J023101N14, full insert sequence),Os09g0509300 protein (cDNA clone:J013110D20, full insert sequence),OSJNBa0072K14.9 protein (Os04g0394700 protein) (cDNA clone:J023149O11, full insert sequence),Os02g0515200 protein Q67UP0,Q67UP1,Q0J0H3,Q7XVM5,A0A0P0VJH7 Q67UP0_ORYSJ,Q67UP1_ORYSJ,Q0J0H3_ORYSJ,Q7XVM5_ORYSJ,A0A0P0VJH7_ORYSJ OSJNBb0071O21.5-2 Os02g0515200 OSNPB_020515200,Os02g0515200 OsJ_06904 OSJNBb0071O21.5-1 OSNPB_020515200,Os09g0509300 Os09g0509300 OsJ_29963 OSNPB_090509300,Os04g0394700 Os04g0394700 OsJ_14618 OSJNBa0072K14.9 OSNPB_040394700,Os02g0515200 OSNPB_020515200 ENOG411DV1E DRT100 Q00874 DR100_ARATH DNA damage-repair/toleration protein DRT100 FUNCTION: This protein is able to complement bacterial recA mutations, but its native function in the plant is not known. 39556 DNA damage-repair/toleration protein DRT100 chloroplast [GO:0009507]; nucleotide binding [GO:0000166]; DNA repair [GO:0006281] locus:2091260; AT3G12610 dna-damage-repair toleration protein Os08g0505900 protein (Putative DNA-damage-repair/toleration protein) (cDNA clone:001-028-G04, full insert sequence) (cDNA clone:J023025G09, full insert sequence) (cDNA clone:J023031M05, full insert sequence) Q6Z3T9 Q6Z3T9_ORYSJ Os08g0505900 Os08g0505900 OJ1134_H03.31 OsJ_27868 OSJNBa0025J22.21 OSNPB_080505900 ENOG411DV1D TOL9 Q8L860,F4JV51,A0A1P8B8V4 TOL9_ARATH,F4JV51_ARATH,A0A1P8B8V4_ARATH TOM1-like protein 9,ENTH/VHS/GAT family protein FUNCTION: Might contribute to the loading of the ESCRT machinery. {ECO:0000305|PubMed:16488176}. 72963,73092,53995 TOM1-like protein 9,ENTH/VHS/GAT family protein cytoplasm [GO:0005737]; membrane [GO:0016020]; intracellular protein transport [GO:0006886],intracellular [GO:0005622]; plasma membrane [GO:0005886]; intracellular protein transport [GO:0006886],intracellular [GO:0005622]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:24699223}. locus:2125642; AT4G32760 VHS and GAT domain containing protein Os06g0332400 protein (Putative TOM1 protein),Os02g0273700 protein (Putative VHS domain-containing protein),Os01g0229200 protein (Target of myb1-like) (cDNA clone:J013047G02, full insert sequence),Os01g0229200 protein (Fragment) Q69WH7,Q6K7U3,Q5N7Y5,A0A0P0V0E2,A0A0P0V024,A0A0P0V066 Q69WH7_ORYSJ,Q6K7U3_ORYSJ,Q5N7Y5_ORYSJ,A0A0P0V0E2_ORYSJ,A0A0P0V024_ORYSJ,A0A0P0V066_ORYSJ Os06g0332400 Os06g0332400 OsJ_21204 OSNPB_060332400 P0531C01.15 P0577H07.23,Os02g0273700 OSNPB_020273700 P0413A11.12 P0521F09.39,Os01g0229200 OsJ_00977 OSNPB_010229200 P0452F10.31 P0485D09.7,Os01g0229200 OSNPB_010229200 ENOG411DV1G WRKY15 O22176,F4ILJ1 WRK15_ARATH,F4ILJ1_ARATH Probable WRKY transcription factor 15 (WRKY DNA-binding protein 15),WRKY DNA-binding protein 15 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 34264,28498 Probable WRKY transcription factor 15 (WRKY DNA-binding protein 15),WRKY DNA-binding protein 15 nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2058568; AT2G23320 Transcription factor NA NA NA NA NA NA NA ENOG411DV1F Q147H2,A0A1I9LTI3,F4J5Q0,A0A1I9LTI4,A8MQG8,F4J5Q3 Q147H2_ARATH,A0A1I9LTI3_ARATH,F4J5Q0_ARATH,A0A1I9LTI4_ARATH,A8MQG8_ARATH,F4J5Q3_ARATH 5'-3' exonuclease family protein (At3g52050),5'-3' exonuclease family protein 46689,44875,40244,47456,49270,45537 5'-3' exonuclease family protein (At3g52050),5'-3' exonuclease family protein DNA binding [GO:0003677]; exonuclease activity [GO:0004527],cytoplasm [GO:0005737]; DNA binding [GO:0003677]; exonuclease activity [GO:0004527]; DNA-dependent DNA replication [GO:0006261] locus:2083775; AT3G52050 DNA polymerase 5'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed (Os03g0227300 protein) (cDNA clone:J023130B17, full insert sequence) Q10PN9 Q10PN9_ORYSJ LOC_Os03g12610 Os03g0227300 OsJ_10000 OSNPB_030227300 ENOG411DV1A Q682P6 Q682P6_ARATH Metallo-hydrolase/oxidoreductase superfamily protein (Uncharacterized protein At1g25375) 58067 Metallo-hydrolase/oxidoreductase superfamily protein (Uncharacterized protein At1g25375) integral component of membrane [GO:0016021]; plastid [GO:0009536]; hydrolase activity [GO:0016787] locus:505006146; AT1G25375 Metallo-beta-lactamase superfamily Os01g0133500 protein Q5ZCN0,Q5ZCN1 Q5ZCN0_ORYSJ,Q5ZCN1_ORYSJ OSJNBa0083M16.21-2 Os01g0133500 OSNPB_010133500,Os01g0133500 Os01g0133500 OsJ_00262 OSJNBa0083M16.21-1 OSNPB_010133500 ENOG411DV1C RPL10B,RPL10A,RPL10C Q08770,Q93VT9,Q93W22,A0A1P8AUU3 RL102_ARATH,RL101_ARATH,RL103_ARATH,A0A1P8AUU3_ARATH 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog),60S ribosomal protein L10-1 (Ribosomal protein RPL10A) (Suppressor of ACAULIS 52),60S ribosomal protein L10-3,Ribosomal protein L16p/L10e family protein DISRUPTION PHENOTYPE: No visible phenotype, when heterozygous (PubMed:20516338). Lethality in the female gametophyte, when homozygous (PubMed:18694459, PubMed:20516338). Enhanced susceptibility to geminivirus infection (PubMed:18789471, PubMed:19112492). {ECO:0000269|PubMed:18694459, ECO:0000269|PubMed:18789471, ECO:0000269|PubMed:19112492, ECO:0000269|PubMed:20516338}. Double mutant shows increase in growth of 68% relative to acl5-1 single mutant. Also restores normal liginification.,Defective female gametophytes. Dwarf; Abnormal leaf morphology; Short roots-P. Casati-2010,Complete female gametophyte defective-T. Takahashi-2008 FUNCTION: Ribosomal protein involved in translational regulation (PubMed:18694459). Contribute to general translation under UV-B stress (PubMed:20516338, PubMed:23886624). Involved in the NIK1-mediated defense response to geminivirus infection (PubMed:18789471, PubMed:19112492). Acts coordinately with LIMYB as a transcriptional repressor (PubMed:25707794). {ECO:0000269|PubMed:18694459, ECO:0000269|PubMed:18789471, ECO:0000269|PubMed:19112492, ECO:0000269|PubMed:20516338, ECO:0000269|PubMed:23886624, ECO:0000269|PubMed:25707794}. MISCELLANEOUS: Under UV-B conditions, RPL10 proteins interact with several nuclear proteins, including RBG7 (glycine-rich RNA binding protein), which has an important role in mediating innate immune response to pathogens, and BTR1 that specifically binds to tomato mosaic virus (ToMV) genomic RNA and inhibits the local spread of virus. {ECO:0000269|PubMed:20855946}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 24909,24917,24929,20545 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog),60S ribosomal protein L10-1 (Ribosomal protein RPL10A) (Suppressor of ACAULIS 52),60S ribosomal protein L10-3,Ribosomal protein L16p/L10e family protein chloroplast envelope [GO:0009941]; cytoplasm [GO:0005737]; cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; nucleus [GO:0005634]; ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; developmental process [GO:0032502]; response to UV-B [GO:0010224]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; ribosome [GO:0005840]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cellular response to UV-B [GO:0071493]; defense response to virus [GO:0051607]; developmental process [GO:0032502]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytoplasm [GO:0005737]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; ribosome [GO:0005840]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; developmental process [GO:0032502]; mature ribosome assembly [GO:0042256]; response to UV-B [GO:0010224]; ribosomal large subunit assembly [GO:0000027]; ribosome assembly [GO:0042255]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] DEVELOPMENTAL STAGE: Expressed in tissues with active division, with the highest levels in 3-week-old leaves and lowest levels in senescent leaves. {ECO:0000269|PubMed:20516338}. TISSUE SPECIFICITY: Ubiquitous, with the highest expression in flowers (PubMed:18694459). Expressed in seedlings, leaves, roots, stems and flowers (PubMed:25707794). Expressed in young leaves, mostly in dividing cells and in the hydathodes, in the root tips and lateral root primordia, in pistils, anthers, and pollen grains, and in developing seeds (PubMed:23886624). {ECO:0000269|PubMed:18694459, ECO:0000269|PubMed:23886624, ECO:0000269|PubMed:25707794}. locus:2202810;,locus:2012612;,locus:2195155; AT1G26910,AT1G14320,AT1G66580 60S ribosomal protein 60S ribosomal protein L10-1 (Protein QM) (Putative tumor suppressor SC34),60S ribosomal protein L10-2 (Protein QM1) (Putative tumor suppressor SG12),Os05g0169100 protein (Fragment) Q0ITS8,Q0DKF0,A0A0P0WIJ3 RL101_ORYSJ,RL102_ORYSJ,A0A0P0WIJ3_ORYSJ SC34 Os11g0220800 LOC_Os11g11390 OsJ_032053,SG12 QM1 Os05g0169100 LOC_Os05g07700,Os05g0169100 OSNPB_050169100 ENOG411DV1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May be involved in modulation of pathogen defense and leaf cell death (By similarity) Os02g0562600 protein (cDNA clone:J023080H22, full insert sequence) B7F6U9 B7F6U9_ORYSJ Os02g0562600 OSNPB_020562600 ENOG411DPY7 LIP5 Q9SZ15 LIP5_ARATH Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 (Protein EXTENSIN-LIKE) (EXT-LIKE) DISRUPTION PHENOTYPE: No strong phenotypic alterations under normal growth conditions; slightly slow growth, slightly pale green and flat leaves, and reduced seed yields (PubMed:17468262, PubMed:25010425). Increased sensitivity to Pseudomonas syringae pv. tomato strain DC3000 (PstDC3000)(PubMed:25010425). {ECO:0000269|PubMed:17468262, ECO:0000269|PubMed:25010425}. FUNCTION: Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins (By similarity). Thought to be a cofactor of SKD1/VPS4, which catalyzes the disassembly of membrane-associated ESCRT-III (PubMed:17468262). Target of pathogen-responsive mitogen-activated protein kinases (MPKs) that plays a critical role in plant basal resistance to Pseudomonas syringae in a SKD1-dependent manner by promoting multivesicular bodies (MVBs) trafficking upon plant infection (PubMed:25010425). {ECO:0000250, ECO:0000269|PubMed:17468262, ECO:0000269|PubMed:25010425}. 46218 Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 (Protein EXTENSIN-LIKE) (EXT-LIKE) cytoplasm [GO:0005737]; endosome membrane [GO:0010008]; multivesicular body [GO:0005771]; nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; defense response, incompatible interaction [GO:0009814]; positive regulation of defense response to bacterium [GO:1900426]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2116437; AT4G26750 vacuolar protein sorting-associated protein VTA1 Os06g0308800 protein (Putative LYST-interacting protein LIP5) (cDNA clone:J013093K12, full insert sequence) Q5Z4L5 Q5Z4L5_ORYSJ Os06g0308800 Os06g0308800 OsJ_21105 OSNPB_060308800 P0414E10.11 P0417E03.37 ENOG411DPY6 F4JCY2,B3H4A0,A0A1I9LMF7,A0A1I9LMF9,A0A1I9LMF8 CSCL8_ARATH,B3H4A0_ARATH,A0A1I9LMF7_ARATH,A0A1I9LMF9_ARATH,A0A1I9LMF8_ARATH CSC1-like protein At3g54510,Early-responsive to dehydration stress protein (ERD4) FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. 81399,70654,56103,66848,60639 CSC1-like protein At3g54510,Early-responsive to dehydration stress protein (ERD4) integral component of membrane [GO:0016021]; ion transport [GO:0006811],integral component of membrane [GO:0016021] locus:2096991; AT3G54510 Domain of unknown function DUF221 Early-responsive to dehydration protein-like (Os01g0950900 protein) Q5JKX1 Q5JKX1_ORYSJ Os01g0950900 B1147A04.34 OSNPB_010950900 ENOG411DPY5 PPK1 Q84VX4 Q84VX4_ARATH At1g77720 (Uncharacterized protein At1g77720) 86377 At1g77720 (Uncharacterized protein At1g77720) ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; chromosome separation [GO:0051304]; mitotic cell cycle checkpoint [GO:0007093]; protein autophosphorylation [GO:0046777] locus:2203196; AT1G77720 kinase family Os03g0704400 protein (Protein kinase family protein, putative, expressed) Q75IA9 Q75IA9_ORYSJ OSJNBa0004L11.1 LOC_Os03g49750 Os03g0704400 OSNPB_030704400 ENOG411DPY4 WRKY32 P59583 WRK32_ARATH Probable WRKY transcription factor 32 (WRKY DNA-binding protein 32) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 51480 Probable WRKY transcription factor 32 (WRKY DNA-binding protein 32) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:505006536; AT4G30935 Transcription factor NA NA NA NA NA NA NA ENOG411DPY3 MOP10.6,F9F8.12 Q9FFG3,Q9SRL6 Q9FFG3_ARATH,Q9SRL6_ARATH Outer membrane OMP85 family protein (Uncharacterized protein MOP10.6),Outer membrane OMP85 family protein (Uncharacterized protein At3g11070) (Uncharacterized protein F11B9.3) (Uncharacterized protein F9F8.12) 58520,57209 Outer membrane OMP85 family protein (Uncharacterized protein MOP10.6),Outer membrane OMP85 family protein (Uncharacterized protein At3g11070) (Uncharacterized protein F11B9.3) (Uncharacterized protein F9F8.12) mitochondrion [GO:0005739]; outer membrane [GO:0019867]; plastid [GO:0009536],integral component of mitochondrial outer membrane [GO:0031307]; mitochondrion [GO:0005739] locus:2169702;,locus:2074618; AT5G05520,AT3G11070 Sorting and assembly machinery component 50 homolog Os05g0470800 protein Q6ATX4 Q6ATX4_ORYSJ Os05g0470800 OsJ_18881 OSJNBa0052E20.7 OSNPB_050470800 P0015C02.2 ENOG411DPY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endoglucanase Endoglucanase 17 (EC 3.2.1.4) (Endo-1,4-beta glucanase 17) (OsGLU13),Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) (OsCel9E) Q652F9,Q6Z2J3 GUN17_ORYSJ,GUN6_ORYSJ GLU13 Os06g0256900 LOC_Os06g14540 OsJ_020012 P0624H09.19,Os02g0733300 LOC_Os02g50040 P0643A10.32 ENOG411DPY1 GBSS1 Q9MAQ0 SSG1_ARATH Granule-bound starch synthase 1, chloroplastic/amyloplastic (AtGBS1) (AtGBSS1) (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) DISRUPTION PHENOTYPE: Production of amylose-free starch. {ECO:0000269|PubMed:25710501}. FUNCTION: Required for the synthesis of amylose (PubMed:25710501). Destroyed as it is released from the starch granules during the night (PubMed:15347792). The circadian expression is controlled by CCA1 and LHY transcription factors (PubMed:12777053). {ECO:0000269|PubMed:12777053, ECO:0000269|PubMed:15347792, ECO:0000269|PubMed:25710501}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT1G32900-MONOMER; 2.4.1.242; 2.4.1.242 66879 Granule-bound starch synthase 1, chloroplastic/amyloplastic (AtGBS1) (AtGBSS1) (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) chloroplast [GO:0009507]; chloroplast starch grain [GO:0009569]; glycogen (starch) synthase activity [GO:0004373]; NDP-glucose-starch glucosyltransferase activity [GO:0033840]; starch synthase activity [GO:0009011]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Expressed in roots, inflorescences, flowers, fruits and at much higher levels in leaves. {ECO:0000269|PubMed:12777053}. locus:2037950; AT1G32900 Granule-bound starch synthase Granule-bound starch synthase 1, chloroplastic/amyloplastic (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (allergen Ory s GBSS_I),Starch synthase, chloroplastic/amyloplastic (EC 2.4.1.-) Q0DEV5,Q8GTK0 SSG1_ORYSJ,Q8GTK0_ORYSJ WAXY WX WX-B Os06g0133000 LOC_Os06g04200 134P10.7 P0679C08.19,P0710F09.134 GBSSII Os07g0412100 OsJ_23947 OSNPB_070412100 FUNCTION: Required for the synthesis of amylose in endosperm. ENOG411DPY0 Q9S9Q9 Y1044_ARATH BTB/POZ domain-containing protein At1g30440 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 73410 BTB/POZ domain-containing protein At1g30440 plasma membrane [GO:0005886]; protein ubiquitination [GO:0016567] locus:2028160; AT1G30440 BTB POZ domain-containing protein NA NA NA NA NA NA NA ENOG411DPY9 FRO6,FRO7 Q8RWS6,Q3KTM0,A0A1P8BH71,A0A1P8BCN1,A0A1P8BCP4 FRO6_ARATH,FRO7_ARATH,A0A1P8BH71_ARATH,A0A1P8BCN1_ARATH,A0A1P8BCP4_ARATH Ferric reduction oxidase 6 (AtFRO6) (EC 1.16.1.7) (Ferric-chelate reductase 6),Ferric reduction oxidase 7, chloroplastic (AtFRO7) (EC 1.16.1.7) (Ferric-chelate reductase 7),Ferric reduction oxidase 6,Ferric reduction oxidase 7 DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Reduced photosynthetic electron transport efficiency, chloroplast ferric chelate reductase activity and iron content. Seedling lethal when grown in alkaline soil. {ECO:0000269|PubMed:18647837}. FUNCTION: Ferric chelate reductase involved in iron uptake by shoot and leaf cells. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:18647837, ECO:0000269|PubMed:21104018}.,FUNCTION: Ferric chelate reductase involved in iron mobilization from the cytosol into the chloroplast. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. Might be involved iron homeostasis in trichomes. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:18647837}. ARA:GQT-1293-MONOMER;,ARA:AT5G49740-MONOMER;MetaCyc:AT5G49740-MONOMER; 1.16.1.7; 1.16.1.7 83458,84126,61002,61587,80302 Ferric reduction oxidase 6 (AtFRO6) (EC 1.16.1.7) (Ferric-chelate reductase 6),Ferric reduction oxidase 7, chloroplastic (AtFRO7) (EC 1.16.1.7) (Ferric-chelate reductase 7),Ferric reduction oxidase 6,Ferric reduction oxidase 7 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811]; response to light stimulus [GO:0009416],chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811]; photosynthetic electron transport chain [GO:0009767],integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491] DEVELOPMENTAL STAGE: Not expressed in germinating seeds. Expressed during cell or organ differentiation. {ECO:0000269|PubMed:16489134}.,DEVELOPMENTAL STAGE: Expressed during cell or organ differentiation. {ECO:0000269|PubMed:16489134}. TISSUE SPECIFICITY: Expressed in shoots and leaves. Detected in cotyledons, stems, siliques, flowers, sepals, anther filaments and stigmas, but not in roots. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:16362328}.,TISSUE SPECIFICITY: Expressed in shoots, flowers and siliques. Detected in cotyledons, leaves and trichomes, but not in roots. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:16362328, ECO:0000269|PubMed:18647837}. locus:2157027;,locus:2157032; AT5G49730,AT5G49740 reductase Os04g0444800 protein (cDNA clone:J013093I17, full insert sequence) Q0JCX7 Q0JCX7_ORYSJ Os04g0444800 Os04g0444800 OSNPB_040444800 ENOG411DPY8 Q9ZUX8 Q9ZUX8_ARATH At2g27770 (DUF868 family protein (DUF868)) (Uncharacterized protein At2g27770) (Uncharacterized protein At2g27770/F15K20.13) 36096 At2g27770 (DUF868 family protein (DUF868)) (Uncharacterized protein At2g27770) (Uncharacterized protein At2g27770/F15K20.13) locus:2042092; AT2G27770 Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411DPYW GTE11,GTE9,GTE10,GTE8,NDPK2,BET10,BET9 Q93ZB7,Q93YS6,Q9FGW9,Q9LK27,O64903,A0A1I9LS77,A0A1I9LS78,A0A1I9LQQ3,F4JEZ0,F4K6Q7 GTE11_ARATH,GTE9_ARATH,GTE10_ARATH,GTE8_ARATH,NDK2_ARATH,A0A1I9LS77_ARATH,A0A1I9LS78_ARATH,A0A1I9LQQ3_ARATH,F4JEZ0_ARATH,F4K6Q7_ARATH Transcription factor GTE11 (BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10) (AtBET10) (Bromodomain-containing protein GTE11) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E11),Transcription factor GTE9 (BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9) (AtBET9) (Bromodomain-containing protein GTE9) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E9),Transcription factor GTE10 (Bromodomain-containing protein GTE10) (Nuclear protein X1) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E10),Transcription factor GTE8 (Bromodomain-containing protein GTE8) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E8),Nucleoside diphosphate kinase II, chloroplastic (NDK II) (NDP kinase II) (NDPK II) (NDPK Ia) (EC 2.7.4.6),Global transcription factor group E8,Bromodomain and extraterminal domain protein 10,Bromodomain and extraterminal domain protein 9 Mutant has a slightly shorter hypocotyl.,Overaccumulates H2O2 by a different mechanism not dependent on photosynthesis.,Showed defects in cotyledon opening and hook straightening under continuous far-red light. Wild-type seedlings developed an open hook and cotyledons at 7 ;Wcm-2 whereas ndpk2 mutant seedlings had a closed hook and cotyledons at this fluence rate. At 14.7 μWcm-2 the hook was open but the cotyledons were not completely open.,The mutant was marginally less sensitive for red light in terms of hypocotyl elongation but the mutant showed a strong defect in red-light-induced cotyledon opening and greening. Short hypocotyl and reduced cotyledon opening and apical hook strengthening under far-red light-P. Song-1999 FUNCTION: Acts as a negative regulator in plant response to changes in environmental conditions through the control of ABA-regulated gene expression. {ECO:0000269|PubMed:19759343}.,FUNCTION: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. May activate MPK3 and MPK6. May be involved in the regulation of cellular redox state and hydrogen peroxide-mediated MAP kinase signaling. {ECO:0000269|PubMed:12506203}. ARA:AT5G63310-MONOMER; 2.7.4.6; 2.7.4.6 69881,75895,118973,90233,25550,91183,79763,54638,85091,75992 Transcription factor GTE11 (BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10) (AtBET10) (Bromodomain-containing protein GTE11) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E11),Transcription factor GTE9 (BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9) (AtBET9) (Bromodomain-containing protein GTE9) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E9),Transcription factor GTE10 (Bromodomain-containing protein GTE10) (Nuclear protein X1) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E10),Transcription factor GTE8 (Bromodomain-containing protein GTE8) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E8),Nucleoside diphosphate kinase II, chloroplastic (NDK II) (NDP kinase II) (NDPK II) (NDPK Ia) (EC 2.7.4.6),Global transcription factor group E8,Bromodomain and extraterminal domain protein 10,Bromodomain and extraterminal domain protein 9 nucleus [GO:0005634]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to potassium ion starvation [GO:0051365]; negative regulation of transcription, DNA-templated [GO:0045892]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; nucleoside diphosphate kinase activity [GO:0004550]; auxin-activated signaling pathway [GO:0009734]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; red, far-red light phototransduction [GO:0009585]; response to hydrogen peroxide [GO:0042542]; response to UV [GO:0009411]; UTP biosynthetic process [GO:0006228] TISSUE SPECIFICITY: Widely expressed in all tissues. {ECO:0000269|PubMed:19759343}. locus:2082289;,locus:2158564;,locus:2086498;,locus:2161922;,locus:2145673; AT3G01770,AT5G14270,AT5G63320,AT3G27260,AT5G63310 transcription factor Os02g0601800 protein (Putative global transcription factor group E),Os02g0601800 protein (Putative global transcription factor group E) (cDNA clone:J033088P12, full insert sequence),Os02g0601800 protein (Fragment) Q6K5G2,Q6K5G1,A0A0P0VLE9 Q6K5G2_ORYSJ,Q6K5G1_ORYSJ,A0A0P0VLE9_ORYSJ OJ1791_B03.42-1 Os02g0601800 OJ1669_F01.4-1 OsJ_07416 OSNPB_020601800,OJ1791_B03.42-2 Os02g0601800 OJ1669_F01.4-2 OSNPB_020601800,Os02g0601800 OSNPB_020601800 ENOG411DPYV PUB24 Q9SF15 PUB24_ARATH E3 ubiquitin-protein ligase PUB24 (EC 2.3.2.27) (Plant U-box protein 24) (RING-type E3 ubiquitin transferase PUB24) (U-box domain-containing protein 24) This triple mutant does not exhibit any obvious constitutive defense signaling phenotypes and it has normal fertility compared to wild-type plants. However it has an enhanced relative oxidative burst compared to wild type plants in response to flg22 chitin and the conserved elf18 epitope from a bacterial transcription factor. MPK3 transcripts remain elevated for longer in the mutant than in wild-type seedlings though the MPK3 protein does not appear to have altered protein stability in this triple mutant.When challenged with the bacterial pathogen Pst the triple mutant allows ~30 times less bacterial growth than wild-type plants. It is also less susceptible to a biotrophic oomycete. FUNCTION: E3 ubiquitin-protein ligase that acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB23. {ECO:0000269|PubMed:18771922}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 51287 E3 ubiquitin-protein ligase PUB24 (EC 2.3.2.27) (Plant U-box protein 24) (RING-type E3 ubiquitin transferase PUB24) (U-box domain-containing protein 24) ubiquitin-protein transferase activity [GO:0004842]; defense response [GO:0006952] AT3G11840 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411DPYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferases group 1 Glycosyl transferase, group 1 family protein, expressed (Os03g0265100 protein) (Putative sulfolipid synthase) (cDNA clone:001-115-D07, full insert sequence) Q84QB1 Q84QB1_ORYSJ OJ1012B02.10 LOC_Os03g15840 Os03g0265100 OsJ_10243 OSNPB_030265100 ENOG411DPYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411DPYQ atpA,ATPA P56757,P92549,F4IMB5 ATPA_ARATH,ATPAM_ARATH,F4IMB5_ARATH ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha),ATP synthase subunit alpha, mitochondrial,ATPase, F1 complex, alpha subunit protein FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. {ECO:0000255|HAMAP-Rule:MF_01346}.,FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07698) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. ARA:ATCG00120-MONOMER;,ARA:ATMG01190-MONOMER; 3.6.3.14 55328,55045,85933 ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha),ATP synthase subunit alpha, mitochondrial,ATPase, F1 complex, alpha subunit protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastoglobule [GO:0010287]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; stromule [GO:0010319]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; zinc ion binding [GO:0008270]; ATP synthesis coupled proton transport [GO:0015986]; defense response to bacterium [GO:0042742]; response to cold [GO:0009409],mitochondrial inner membrane [GO:0005743]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; poly(U) RNA binding [GO:0008266]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; zinc ion binding [GO:0008270]; ATP synthesis coupled proton transport [GO:0015986] locus:504954636;,locus:2828106; ATCG00120,ATMG01190,AT2G07698 Produces ATP from ADP in the presence of a proton gradient across the membrane ATP synthase subunit alpha, mitochondrial,ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) P0C522,P0C2Z6 ATPAM_ORYSJ,ATPA_ORYSJ ATPA,atpA LOC_Osp1g00310 Nip046 FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites (By similarity). {ECO:0000250}.,FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. ENOG411DPYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleosome assembly protein (NAP) NAP1-related protein 1 (Protein SET homolog 1),Os04g0459700 protein (Fragment) Q7X7C9,A0A0P0WB77 NRP1_ORYSJ,A0A0P0WB77_ORYSJ Os04g0459700 LOC_Os04g38620 OSJNBa0036B21.26 OSJNBa0072F16.3,Os04g0459700 OSNPB_040459700 FUNCTION: Acts as histone H2A/H2B chaperone in nucleosome assembly. {ECO:0000250}. ENOG411DPYY TFCD,TTN1 Q8L5R3,A0A1I9LRN5,A0A1I9LRN4 TBCD_ARATH,A0A1I9LRN5_ARATH,A0A1I9LRN4_ARATH Tubulin-folding cofactor D (AtTFCD) (Protein CHAMPIGNON) (Protein EMBRYO DEFECTIVE 133) (Protein TITAN 1),ARM repeat superfamily protein DISRUPTION PHENOTYPE: Embryo lethality. Embryo development limited to the formation of a few giant cells lacking microtubules but not actin filaments, each with one to several nuclei. Failure to localize KNOLLE in mitotic cells. Presence of abnormal endosperm with giant polyploid nuclei. {ECO:0000269|PubMed:11788751, ECO:0000269|PubMed:11959844, ECO:0000269|PubMed:9807824}. Embryo defective; Preglobular; Enlarged embryo cells and endosperm nuclei-D. Meinke-2002 FUNCTION: Regulates microtubule function in seed development. Required for development of both embryo and endosperm tissue. Not essential for cell viability. Probably involved in the binding of beta-tubulin in the multimeric supercomplex. {ECO:0000269|PubMed:10099932, ECO:0000269|PubMed:11788751, ECO:0000269|PubMed:11959844, ECO:0000269|PubMed:9807824}. MISCELLANEOUS: Belongs to the PILZ group of genes that disrupt, when mutated, the microtubule cytoskeleton and produce mushroom-shaped ('pilz' in German) embryos. 139916,131535,122046 Tubulin-folding cofactor D (AtTFCD) (Protein CHAMPIGNON) (Protein EMBRYO DEFECTIVE 133) (Protein TITAN 1),ARM repeat superfamily protein cytosol [GO:0005829]; microtubule [GO:0005874]; plasmodesma [GO:0009506]; beta-tubulin binding [GO:0048487]; GTPase activator activity [GO:0005096]; tubulin binding [GO:0015631]; embryo development ending in seed dormancy [GO:0009793]; microtubule cytoskeleton organization [GO:0000226]; microtubule-based process [GO:0007017]; positive regulation of GTPase activity [GO:0043547]; post-chaperonin tubulin folding pathway [GO:0007023]; protein folding [GO:0006457]; tubulin complex assembly [GO:0007021],beta-tubulin binding [GO:0048487]; GTPase activator activity [GO:0005096]; post-chaperonin tubulin folding pathway [GO:0007023]; tubulin complex assembly [GO:0007021] locus:2101856; AT3G60740 cofactor D Os10g0508500 protein A0A0P0XWK9 A0A0P0XWK9_ORYSJ Os10g0508500 OSNPB_100508500 ENOG411DPYX Q9SR77 HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic 35035 Heme-binding-like protein At3g10130, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; plastoglobule [GO:0010287] locus:2100043; AT3G10130 heme-binding-like protein At3g10130 Os02g0533200 protein (SOUL heme-binding protein-like) Q6EPY8 Q6EPY8_ORYSJ Os02g0533200 Os02g0533200 B1136H02.1 OSNPB_020533200 P0605D08.34 ENOG411DPYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0198200 protein (Fragment) Q0IU19 Q0IU19_ORYSJ Os11g0198200 OSNPB_110198200 ENOG411DPYF GGCT2;1,GGCT2;2,GGCT2;3,AtGGCT2:1 Q8GY54,Q84MC1,Q84QC1,A0A1R7T3I6 GCT21_ARATH,GCT22_ARATH,GCT23_ARATH,A0A1R7T3I6_ARATH Gamma-glutamylcyclotransferase 2-1 (AtGGCT2;1) (EC 2.3.2.4) (Gamma-glutamyl cyclotransferase 2;1),Gamma-glutamylcyclotransferase 2-2 (AtGGCT2;2) (EC 2.3.2.4) (Gamma-glutamyl cyclotransferase 2;2),Gamma-glutamylcyclotransferase 2-3 (AtGGCT2;3) (EC 2.3.2.4) (Gamma-glutamyl cyclotransferase 2;3),Gamma-glutamylcyclotransferase (EC 2.3.2.4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased tolerance to arsenite and cadmium. {ECO:0000269|PubMed:24214398}. FUNCTION: Catalyzes the formation of 5-oxoproline from gamma-glutamyl dipeptides and plays a significant role in glutathione (GSH) homeostasis. Converts both GSH and gamma-glutamyl-L-alanine to 5-oxoproline in vitro. Plays a role in detoxification of heavy metals and metalloids by recycling glutamate and maintaining GSH homeostasis. {ECO:0000269|PubMed:24214398}.,FUNCTION: Catalyzes the formation of 5-oxoproline from gamma-glutamyl dipeptides and plays a significant role in glutathione (GSH) homeostasis. Converts GSH to 5-oxoproline and cysteine-glycine (Cys-Gly) dipeptide in vitro. Possesses low activity towards gamma-glutamyl-L-alanine. Has no activity towards gamma-glutamyl-L-cysteine. {ECO:0000269|PubMed:25716890}.,FUNCTION: Catalyzes the formation of 5-oxoproline from gamma-glutamyl dipeptides and plays a significant role in glutathione (GSH) homeostasis. {ECO:0000256|RuleBase:RU363081}. R-ATH-174403; 2.3.2.4 24573,25607,22229,20855 Gamma-glutamylcyclotransferase 2-1 (AtGGCT2;1) (EC 2.3.2.4) (Gamma-glutamyl cyclotransferase 2;1),Gamma-glutamylcyclotransferase 2-2 (AtGGCT2;2) (EC 2.3.2.4) (Gamma-glutamyl cyclotransferase 2;2),Gamma-glutamylcyclotransferase 2-3 (AtGGCT2;3) (EC 2.3.2.4) (Gamma-glutamyl cyclotransferase 2;3),Gamma-glutamylcyclotransferase (EC 2.3.2.4) cytoplasm [GO:0005737]; gamma-glutamylcyclotransferase activity [GO:0003839]; glutathione catabolic process [GO:0006751]; response to cadmium ion [GO:0046686]; response to lead ion [GO:0010288],cytoplasm [GO:0005737]; gamma-glutamylcyclotransferase activity [GO:0003839]; glutathione catabolic process [GO:0006751],cytoplasm [GO:0005737]; cytosol [GO:0005829]; gamma-glutamylcyclotransferase activity [GO:0003839]; glutathione catabolic process [GO:0006751],gamma-glutamylcyclotransferase activity [GO:0003839]; glutathione catabolic process [GO:0006751] TISSUE SPECIFICITY: Expressed in the central vascular bundle of roots, leaf veins, hydathodes, cauline leaves, shoot apex, sepal veins, flower receptacles and developing seeds. {ECO:0000269|PubMed:24214398}. locus:2179714;,locus:2128096;,locus:2194854; AT5G26220,AT4G31290,AT1G44790 cation transport regulator-like protein Gamma-glutamylcyclotransferase (EC 4.3.2.9) Q7XV22,Q6K7C2 Q7XV22_ORYSJ,Q6K7C2_ORYSJ Os04g0448600 Os04g0448600 OsJ_14970 OSJNBa0064H22.12 OSNPB_040448600,Os02g0465900 OJ1342_D02.8 OSNPB_020465900 FUNCTION: Catalyzes the formation of 5-oxoproline from gamma-glutamyl dipeptides and plays a significant role in glutathione (GSH) homeostasis. {ECO:0000256|RuleBase:RU363081}. ENOG411DPYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7),Os01g0326100 protein Q9AS12,Q75IS1,Q0JN60 Q9AS12_ORYSJ,Q75IS1_ORYSJ,Q0JN60_ORYSJ prx16 Os01g0327400 B1135C02.47 OsJ_01551 OSNPB_010327400 P0537A05.22,Os05g0162000 Os05g0162000 OSJNBa0034O12.19 OSJNBb0099P06.2 OSNPB_050162000,Os01g0326100 Os01g0326100 OSNPB_010326100 ENOG411DPYD RH22,EMB3108 Q944S1,A0A1P8AQ84 RH22_ARATH,A0A1P8AQ84_ARATH DEAD-box ATP-dependent RNA helicase 22 (EC 3.6.4.13),DEA(D/H)-box RNA helicase family protein Embryo defective; Preglobular-D. Meinke-2011 3.6.4.13 64747,63100 DEAD-box ATP-dependent RNA helicase 22 (EC 3.6.4.13),DEA(D/H)-box RNA helicase family protein chloroplast [GO:0009507]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2202730; AT1G59990 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 22 (EC 3.6.4.13),Os09g0383400 protein (Fragment) Q6H601,A0A0P0XMK3 RH22_ORYSJ,A0A0P0XMK3_ORYSJ Os09g0383400 LOC_Os09g21520 P0505H05.40,Os09g0383400 OSNPB_090383400 ENOG411DPYB STR9 O48529 STR9_ARATH Rhodanese-like domain-containing protein 9, chloroplastic (Sulfurtransferase 9) (AtStr9) 25510 Rhodanese-like domain-containing protein 9, chloroplastic (Sulfurtransferase 9) (AtStr9) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2059999; AT2G42220 Rhodanese-like domain Os09g0279400 protein (Rhodanese family protein-like) (cDNA clone:J013091I09, full insert sequence) Q6H444 Q6H444_ORYSJ Os09g0279400 Os09g0279400 OsJ_28654 OSNPB_090279400 P0651G05.2 P0701E06.35 ENOG411DPYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein Q6Z275,A0A0P0XT55,A0A0P0XTL1 Q6Z275_ORYSJ,A0A0P0XT55_ORYSJ,A0A0P0XTL1_ORYSJ Os08g0402800 OSJNBa0086F04.38 OSNPB_080402800,Os10g0199500 OSNPB_100199500,Os10g0198900 OSNPB_100198900 ENOG411DPYM KIN17,KLP Q9ZVU5,F4KDD7 KIN17_ARATH,KLP_ARATH KIN17-like protein,KIN17-like protein KLP FUNCTION: Promotes the copper deficiency response by direct interaction with SPL7. Acts with SPL7 in a common pathway to promote copper-responsive genes and alleviate oxidative stress during copper-limiting periods. May promote SPL7 function when copper is limiting (PubMed:24335506). Participates in the control of general plant growth and development, and in the response to counteract the negative effects of UV radiation (PubMed:24713636). {ECO:0000269|PubMed:24335506, ECO:0000269|PubMed:24713636}.,FUNCTION: May act as repressor of root growth during copper excess and of hypocotyl growth in the dark. {ECO:0000269|PubMed:24713636}. MISCELLANEOUS: Plants silencing KIN17 show aberrant growth and reduced fertility. {ECO:0000269|PubMed:24713636}. R-ATH-8876725; 47288,40102 KIN17-like protein,KIN17-like protein KLP nuclear speck [GO:0016607]; nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; metal ion binding [GO:0046872]; cellular response to copper ion starvation [GO:0035874]; cellular response to DNA damage stimulus [GO:0006974]; DNA replication [GO:0006260]; regulation of developmental growth [GO:0048638],cytoplasm [GO:0005737]; nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; cellular response to DNA damage stimulus [GO:0006974]; DNA replication [GO:0006260] TISSUE SPECIFICITY: Expressed in root vasculature, lateral roots, cotyledons, rosette leaves, cauline leaves, stems, sepals, style of pistils, mature pollen grains and siliques. {ECO:0000269|PubMed:24335506}. locus:2193859;,locus:504954922; AT1G55460,AT5G51795 DNA RNA-binding protein KIN17-like protein Q75LU5 KIN17_ORYSJ KIN17 Os03g0570300 LOC_Os03g37330 OSJNBa0004B24.17 OSJNBb0015I21.3 ENOG411DPYJ ABCG9 Q9SZR9 AB9G_ARATH ABC transporter G family member 9 (ABC transporter ABCG.9) (AtABCG9) (Probable white-brown complex homolog protein 9) (AtWBC9) 70753 ABC transporter G family member 9 (ABC transporter ABCG.9) (AtABCG9) (Probable white-brown complex homolog protein 9) (AtWBC9) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; protein homodimerization activity [GO:0042803]; cotyledon vascular tissue pattern formation [GO:0010588]; stem vascular tissue pattern formation [GO:0010222] locus:2124029; AT4G27420 ABC transporter NA NA NA NA NA NA NA ENOG411DPYI SS1 Q9FNF2 SSY1_ARATH Starch synthase 1, chloroplastic/amyloplastic (AtSS1) (SSS) (EC 2.4.1.21) (Soluble starch synthase I) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced starch content in leaves. {ECO:0000269|PubMed:16045475}. Low amylopectin levels; Abnormal amylopectin modification-C. D'Hulst-2005 FUNCTION: Involved in the synthesis of short glycan chains within amylopectin in leaves. Is required to generate chains up to about a degree of polymerization of 10 (DP10). {ECO:0000269|PubMed:16045475, ECO:0000269|PubMed:21624979}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT5G24300-MONOMER;MetaCyc:AT5G24300-MONOMER; 2.4.1.21 72099 Starch synthase 1, chloroplastic/amyloplastic (AtSS1) (SSS) (EC 2.4.1.21) (Soluble starch synthase I) amyloplast [GO:0009501]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; alpha-1,4-glucan synthase activity [GO:0033201]; glycogen (starch) synthase activity [GO:0004373]; starch synthase activity [GO:0009011]; amylopectin biosynthetic process [GO:0010021]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, buds and flowers. {ECO:0000269|PubMed:16045475, ECO:0000269|PubMed:17217470}. locus:2169749; AT5G24300 Starch synthase Soluble starch synthase 1, chloroplastic/amyloplastic (EC 2.4.1.21) (SSS 1) (Starch synthase I) Q0DEC8 SSY1_ORYSJ Os06g0160700 LOC_Os06g06560 P0681F10.13 MISCELLANEOUS: Three forms of soluble starch synthase were purified: RSS1, RSS2 and RSS3. ENOG411DPYH RABA1G,RABA1F Q9LK99,Q9FJH0 RAA1G_ARATH,RAA1F_ARATH Ras-related protein RABA1g (AtRABA1g),Ras-related protein RABA1f (AtRABA1f) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-5620916;R-ATH-8873719; Endocytosis (04144),Pancreatic secretion (04972),Vasopressin-regulated water reabsorption (04962),Endocrine and other factor-regulated calcium reabsorption (04961) 24283,24276 Ras-related protein RABA1g (AtRABA1g),Ras-related protein RABA1f (AtRABA1f) cytosol [GO:0005829]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031]; response to cadmium ion [GO:0046686],endosome [GO:0005768]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031] locus:2086290;,locus:2159285; AT3G15060,AT5G60860 ras-related protein Os05g0564400 protein (Putative GTP-binding protein) (cDNA clone:006-203-A06, full insert sequence) (cDNA clone:J033007H18, full insert sequence),Os09g0327100 protein (Putative GTP-binding protein) (cDNA clone:J023092H24, full insert sequence) Q6AUF8,Q6K2P6 Q6AUF8_ORYSJ,Q6K2P6_ORYSJ Os05g0564400 OsJ_19557 OSJNBb0053D02.13 OSNPB_050564400,Os09g0327100 Os09g0327100 OsJ_28889 OSNPB_090327100 P0706E03.6 ENOG411E0WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0115900 protein (cDNA clone:J013153N07, full insert sequence),Os06g0101701 protein Q6YW96,A0A0P0WS02 Q6YW96_ORYSJ,A0A0P0WS02_ORYSJ Os09g0115900 Os09g0115900 OJ1310_F05.23 OsJ_28395 OSNPB_090115900 P0563F09.7,Os06g0101701 OSNPB_060101701 ENOG411E37W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411EC62 CRK2 Q9LJL9 CAMK2_ARATH CDPK-related kinase 2 (AtCRK2) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 2) FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 67207 CDPK-related kinase 2 (AtCRK2) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; metal ion binding [GO:0046872]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2094053; AT3G19100 S_TKc NA NA NA NA NA NA NA ENOG411EC61 Q9SIU9,Q8S8D8 Y2262_ARATH,Y2265_ARATH UPF0725 protein At2g20620,UPF0725 protein At2g20625 31926,21976 UPF0725 protein At2g20620,UPF0725 protein At2g20625 locus:2046051; AT2G20620,AT2G20625 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EC65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Probable high-affinity nitrate transporter-activating protein 2.2 (OsNAR2.2) Q7XK12 NAR22_ORYSJ NAR2.2 Os04g0480200 LOC_Os04g40410 OSJNBa0044K18.32 FUNCTION: Involved in nitrate transport. {ECO:0000250}. ENOG411EC6J Q9SYA0,A0A1P8AU51,A0A1P8AU37 Y1150_ARATH,A0A1P8AU51_ARATH,A0A1P8AU37_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61500 (EC 2.7.11.1),S-locus lectin protein kinase family protein 2.7.11.1 90331,88184,90856 G-type lectin S-receptor-like serine/threonine-protein kinase At1g61500 (EC 2.7.11.1),S-locus lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] locus:2200888; AT1G61500 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EC6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease NA NA NA NA NA NA NA ENOG411EC6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic 7S NA NA NA NA NA NA NA ENOG411EC6C HAC2 Q9FYH1 HAC2_ARATH Histone acetyltransferase HAC2 (EC 2.3.1.48) FUNCTION: Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation (By similarity). No acetyltransferase activity found in vitro. {ECO:0000250|UniProtKB:Q9C5X9, ECO:0000269|PubMed:11160878}. R-ATH-3371568;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210; 2.3.1.48 155772 Histone acetyltransferase HAC2 (EC 2.3.1.48) nucleus [GO:0005634]; transcription cofactor activity [GO:0003712]; transferase activity, transferring acyl groups [GO:0016746]; zinc ion binding [GO:0008270]; histone acetylation [GO:0016573]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in young seedlings. {ECO:0000269|PubMed:11160878}. TISSUE SPECIFICITY: Rosette leaves, stems and flowers. {ECO:0000269|PubMed:11160878}. locus:2019549; AT1G67220 Histone acetylation protein NA NA NA NA NA NA NA ENOG411EC6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411EC6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E970 SBT3.16 Q8GWX9 SBT3G_ARATH Subtilisin-like protease SBT3.16 (EC 3.4.21.-) (Subtilase subfamily 3 member 16) (AtSBT3.16) ARA:AT1G66210-MONOMER; 3.4.21.- 81492 Subtilisin-like protease SBT3.16 (EC 3.4.21.-) (Subtilase subfamily 3 member 16) (AtSBT3.16) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252] locus:2205303; AT1G66210 Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411E97H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRHD CYB Q6IDL4,Q9FVU0 P24D3_ARATH,P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta3 (p24 family protein delta1a) (p24delta1a) (p24 family protein delta3) (p24delta3),Transmembrane emp24 domain-containing protein p24delta4 (Protein CYTOPLASMIC BODIES) (p24 family protein delta1b) (p24delta1b) (p24 family protein delta4) (p24delta4) DISRUPTION PHENOTYPE: Formation of cytoplasmic bodies. {ECO:0000269|PubMed:24330158}. FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). {ECO:0000250}.,FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Required for trafficking GLL23, a component of the PYK10 complex. May act as a receptor facilitating its packing into COPII carriers and export from the endoplasmic reticulum. {ECO:0000269|PubMed:24330158}. R-ATH-6807878;R-ATH-6811434; 24607,23889 Transmembrane emp24 domain-containing protein p24delta3 (p24 family protein delta1a) (p24delta1a) (p24 family protein delta3) (p24delta3),Transmembrane emp24 domain-containing protein p24delta4 (Protein CYTOPLASMIC BODIES) (p24 family protein delta1b) (p24delta1b) (p24 family protein delta4) (p24delta4) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2012335;,locus:2206520; AT1G09580,AT1G57620 Transmembrane emp24 domain-containing protein Emp24/gp25L/p24-like (Os02g0768200 protein),Os06g0210100 protein (Putative transmembrane protein Tmp21) (cDNA clone:J013097P16, full insert sequence),Os02g0768200 protein (Fragment) Q6ZGK3,Q69TX8,A0A0P0VPU5 Q6ZGK3_ORYSJ,Q69TX8_ORYSJ,A0A0P0VPU5_ORYSJ Os02g0768200 OJ1767_D02.9-1 OsJ_08518 OSNPB_020768200,Os06g0210100 OSNPB_060210100 P0021C04.6,Os02g0768200 OSNPB_020768200 ENOG411DRHV RBL9 Q9FFX0 RBL9_ARATH RHOMBOID-like protein 9, chloroplastic (AtRBL9) (EC 3.4.21.-) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. {ECO:0000303|PubMed:22007993}. 3.4.21.- 47727 RHOMBOID-like protein 9, chloroplastic (AtRBL9) (EC 3.4.21.-) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2159808; AT5G38510 Rhomboid family Os02g0326700 protein (Fragment) A0A0P0VIC0 A0A0P0VIC0_ORYSJ Os02g0326700 OSNPB_020326700 ENOG411DRHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fumarylacetoacetate hydrolase domain-containing protein Probable acylpyruvase FAHD2, mitochondrial (EC 3.7.1.5) (Fumarylacetoacetate hydrolase domain-containing protein 2) (FAH domain-containing protein 2) Q10B63 FAHD2_ORYSJ FAHD2 Os03g0829000 LOC_Os03g61330 OsJ_13211 OSJNBa0010E04.1 OSJNBb0027B08.34 FUNCTION: Probable acylpyruvase. {ECO:0000250|UniProtKB:Q93ZE5}. ENOG411DQJ7 YUP8H12R.18 O64531 O64531_ARATH Mitochondrial transcription termination factor family protein (YUP8H12R.18 protein) 46465 Mitochondrial transcription termination factor family protein (YUP8H12R.18 protein) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2207265; AT1G79220 mitochondrial transcription termination factor family protein NA NA NA NA NA NA NA ENOG411DQJ6 F17F16.7,HCF173 Q8W4D6,A0A1P8AWU9,A0A1P8AWY1 Q8W4D6_ARATH,A0A1P8AWU9_ARATH,A0A1P8AWY1_ARATH High chlorophyll fluorescence phenotype 173 (Uncharacterized protein At1g16720) (Uncharacterized protein At1g16720; F17F16.7),High chlorophyll fluorescence phenotype 173 High chlorophyll fluorescence. Not able to grow photoautotrophically on soil but could be maintained on sucrose-supplemented medium (did not develop any fertile flowers). Impaired photosystem II. Seedling lethal without exogenous sucrose; With exogenous sucrose: Absence of flowers-P. Westhoff-2007 65709,69416,61830 High chlorophyll fluorescence phenotype 173 (Uncharacterized protein At1g16720) (Uncharacterized protein At1g16720; F17F16.7),High chlorophyll fluorescence phenotype 173 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; translational initiation [GO:0006413] locus:2015651; AT1G16720 Complex I intermediate-associated protein 30 (CIA30) Os06g0704700 protein (Putative UOS1) (cDNA clone:J023031L08, full insert sequence),Os02g0137700 protein (Putative UOS1) Q5Z8V8,Q6YXY0 Q5Z8V8_ORYSJ,Q6YXY0_ORYSJ Os06g0704700 OSNPB_060704700 P0018H04.3,OSJNBa0026E05.10 Os02g0137700 OSNPB_020137700 ENOG411DQJ5 SOQ1 Q8VZ10 SOQ1_ARATH Protein SUPPRESSOR OF QUENCHING 1, chloroplastic (EC 3.1.3.-) DISRUPTION PHENOTYPE: High light intensity-dependent and irreversible nonphotochemical quenching (NPQ) due to a decrease in chlorophyll excited-state lifetime. {ECO:0000269|PubMed:23818601}. FUNCTION: Required to maintain light harvesting efficiency, especially during nonphotochemical quenching (NPQ) recovery, via the regulation of chlorophyll excited-state lifetime probably by preventing the formation of a slowly reversible form of antenna quenching. {ECO:0000269|PubMed:23818601}. R-ATH-114608; 3.1.3.- 114402 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic (EC 3.1.3.-) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid membrane [GO:0042651]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; cell redox homeostasis [GO:0045454]; metabolic process [GO:0008152]; nonphotochemical quenching [GO:0010196] locus:2010728; AT1G56500 NHL repeat-containing protein Os03g0311300 protein,Os03g0311300 protein (Fragment) A0A0N7KH54,A0A0P0VWM6 A0A0N7KH54_ORYSJ,A0A0P0VWM6_ORYSJ Os03g0311300 OSNPB_030311300 ENOG411DQJ4 F4JB74,A0A178VGJ3 F4JB74_ARATH,A0A178VGJ3_ARATH Late embryogenesis abundant protein-related / LEA protein-like protein 58567,61044 Late embryogenesis abundant protein-related / LEA protein-like protein locus:2090674; AT3G19430 late embryogenesis Os05g0552600 protein A0A0P0WQQ8 A0A0P0WQQ8_ORYSJ Os05g0552600 OSNPB_050552600 ENOG411DQJ3 Q8GUL5,F4JZU2 Q8GUL5_ARATH,F4JZU2_ARATH tRNA pseudouridine synthase (EC 5.4.99.-) 5.4.99.- 47653,53314 tRNA pseudouridine synthase (EC 5.4.99.-) pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522]; tRNA processing [GO:0008033],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119] locus:2182633; AT5G35400 tRNA pseudouridine synthase Os06g0663100 protein A0A0P0WZP0 A0A0P0WZP0_ORYSJ Os06g0663100 OSNPB_060663100 ENOG411DQJ2 Q8GWQ6 Y6344_ARATH UPF0235 protein At5g63440 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:23454656}. FUNCTION: May play a role during early embryonic development. Probably involved in pre-mRNA splicing (By similarity). {ECO:0000250}. 25693 UPF0235 protein At5g63440 nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2167361; AT5G63440 Uncharacterised ACR YggU family COG1872 Os07g0295200 protein (cDNA clone:001-026-F06, full insert sequence) Q6YVE5 Q6YVE5_ORYSJ B1120F06.133 Os07g0295200 OsJ_23901 OSNPB_070295200 ENOG411DQJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411DQJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os06g0667000 protein,Os06g0656632 protein,Os03g0741950 protein,Os02g0461300 protein,Os12g0157550 protein Q655V6,Q67W79,A0A0P0W2X2,A0A0P0VIQ0,A0A0P0Y785 Q655V6_ORYSJ,Q67W79_ORYSJ,A0A0P0W2X2_ORYSJ,A0A0P0VIQ0_ORYSJ,A0A0P0Y785_ORYSJ Os06g0667000 OsJ_22292 OSNPB_060667000 P0637D03.33,P0460H04.34 Os06g0656632 OSNPB_060656632,Os03g0741950 OSNPB_030741950,Os02g0461300 OSNPB_020461300,Os12g0157550 OSNPB_120157550 ENOG411E5TR YCF37 O64835 O64835_ARATH At2g23670/F26B6.32 (Expressed protein) (Homolog of Synechocystis YCF37) (YCF37-like protein) 17078 At2g23670/F26B6.32 (Expressed protein) (Homolog of Synechocystis YCF37) (YCF37-like protein) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579] locus:2046832; AT2G23670 NA NA NA NA NA NA NA NA ENOG411DQJ9 Q8GUH9 Q8GUH9_ARATH At1g64385 (Transmembrane protein) (Uncharacterized protein At1g64385) 38160 At1g64385 (Transmembrane protein) (Uncharacterized protein At1g64385) cytosol [GO:0005829]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802] locus:504956308; AT1G64385 NA Os05g0573000 protein (cDNA clone:J013072M24, full insert sequence) Q65XK5 Q65XK5_ORYSJ Os05g0573000 Os05g0573000 OJ1735_C10.13 OSNPB_050573000 ENOG411DQJ8 MDH2,MDH1 P57106,P93819 MDHC2_ARATH,MDHC1_ARATH Malate dehydrogenase 2, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 2) (cNAD-MDH2) (Cytsolic malate dehydrogenase 2) (Cytosolic MDH2),Malate dehydrogenase 1, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 1) (cNAD-MDH1) (Cytsolic malate dehydrogenase 1) (Cytosolic MDH1) FUNCTION: Catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments. {ECO:0000305|PubMed:20876337}. R-ATH-70263; 1.1.1.37 35675,35571 Malate dehydrogenase 2, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 2) (cNAD-MDH2) (Cytsolic malate dehydrogenase 2) (Cytosolic MDH2),Malate dehydrogenase 1, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 1) (cNAD-MDH1) (Cytsolic malate dehydrogenase 1) (Cytosolic MDH1) apoplast [GO:0048046]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; NADH metabolic process [GO:0006734]; oxaloacetate metabolic process [GO:0006107]; tricarboxylic acid cycle [GO:0006099],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; NADH metabolic process [GO:0006734]; oxaloacetate metabolic process [GO:0006107]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Expressed in rosette leaves at low levels. {ECO:0000269|PubMed:20876337}.,TISSUE SPECIFICITY: Expressed in rosette leaves. {ECO:0000269|PubMed:20876337}. locus:2176441;,locus:2018244; AT5G43330,AT1G04410 Malate dehydrogenase NA NA NA NA NA NA NA ENOG411E5TZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA Polymerase NA NA NA NA NA NA NA ENOG411DQJG F11F8_10 Q9SF51 Q9SF51_ARATH Exocyst subunit exo70 family protein H4 (Uncharacterized protein F11F8_10) R-ATH-5620916; 70992 Exocyst subunit exo70 family protein H4 (Uncharacterized protein F11F8_10) exocyst [GO:0000145]; exocytosis [GO:0006887] locus:2074989; AT3G09520 exocyst complex NA NA NA NA NA NA NA ENOG411DQJF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transport protein Probable cation transporter HKT7 (OsHKT7) Q7XPF7 HKT7_ORYSJ HKT7 Os04g0607600 LOC_Os04g51830 OSJNBa0060N03.4 FUNCTION: Probable cation transporter. May be involved in regulation of K(+)/Na(+) homeostasis. ENOG411DQJE SLAH1,SLAH4 Q5E930,A8MRV9 SLAH1_ARATH,SLAH4_ARATH S-type anion channel SLAH1 (SLAC1-homolog protein 1),S-type anion channel SLAH4 (SLAC1-homolog protein 4) FUNCTION: Slow, weak voltage-dependent S-type anion efflux channel involved in maintenance of anion homeostasis. {ECO:0000269|PubMed:18305482}.,FUNCTION: Slow, weak voltage-dependent S-type anion efflux channel involved in maintenance of anion homeostasis. {ECO:0000250}. 43407,41583 S-type anion channel SLAH1 (SLAC1-homolog protein 1),S-type anion channel SLAH4 (SLAC1-homolog protein 4) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; voltage-gated anion channel activity [GO:0008308]; cellular ion homeostasis [GO:0006873]; chloride transport [GO:0006821]; positive regulation of anion channel activity [GO:1901529]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; voltage-gated anion channel activity [GO:0008308]; cellular ion homeostasis [GO:0006873] TISSUE SPECIFICITY: Expressed in the vascular systems of root. {ECO:0000269|PubMed:18305482}. locus:2018027;,locus:4010713576; AT1G62280,AT1G62262 S-type anion channel SLAH1-like Os05g0269200 protein,Os01g0247700 protein (Fragment),Os01g0360801 protein Q5W6C1,A0A0P0V174,A0A0P0V329 Q5W6C1_ORYSJ,A0A0P0V174_ORYSJ,A0A0P0V329_ORYSJ Os05g0269200 OSJNBa0037H03.8 OSNPB_050269200,Os01g0247700 OSNPB_010247700,Os01g0360801 OSNPB_010360801 ENOG411DQJD MEE13 A0A1P8B0X7,Q9ZVK7,A0A1P8B0Y2,A0A1P8B0T6,A0A1P8B0V1,F4IGF6 A0A1P8B0X7_ARATH,Q9ZVK7_ARATH,A0A1P8B0Y2_ARATH,A0A1P8B0T6_ARATH,A0A1P8B0V1_ARATH,F4IGF6_ARATH Myosin heavy chain-like protein,Myosin heavy chain-like protein (Uncharacterized protein At2g14680) 64900,70925,55295,51470,67512,73537 Myosin heavy chain-like protein,Myosin heavy chain-like protein (Uncharacterized protein At2g14680) embryo development ending in seed dormancy [GO:0009793] locus:2064247; AT2G14680 NA Os03g0431800 protein (Fragment) A0A0P0VZP7 A0A0P0VZP7_ORYSJ Os03g0431800 OSNPB_030431800 ENOG411DQJC EER5 Q8GWE6,A0A1P8B105 EER5_ARATH,A0A1P8B105_ARATH Enhanced ethylene response protein 5 (Nuclear mRNA export protein THP1) (AtTHP1),Proteasome family protein DISRUPTION PHENOTYPE: No visible phenotype, when grown in absence of ethylene. Extreme ethylene responsivness, when treated with saturating ethylene concentrations (PubMed:18429939). Curly leaf (PubMed:19843313). {ECO:0000269|PubMed:18429939, ECO:0000269|PubMed:19843313}. eer5-1 mutant hypocotyls show hypersensitivity to ethylene but the hypocotyls grow similarly to wild type hypocotyls when etyhlene signaling is blocked using silver nitrate. eer5-1 mutant roots are shorter than wild-type roots when neither are subjected to ethylene treatment but eer5-1 roots do not show altered sensitivity to ethylene. Transcript levels for certain ethylene-responsive genes are aberrant in the eer5-1 mutant. For instance AtEBP expression is lower in eer5-1 than in WT dark-grown seedlings. But EBF1 and EBF2 transcript levels are not altered in the mutant. Dark-grown eer5-1 seedlings do not produce significantly more ethylene than WT seedlings. Although EER5 can interact with members of the signalosome EIN3 protein accumulation is not changed in eer5-1 mutants. Adult eer5-1 mutant plants resemble WT Col-0 plants.,eer5-2 mutant hypocotyls show hypersensitivity to ethylene but the hypocotyls grow similarly to wild type hypocotyls when etyhlene signaling is blocked using silver nitrate. Short roots; Very short hypocotyl in response to saturating ethylene concentrations-P. Larsen-2008 FUNCTION: Involved in the regulation of ethylene response (PubMed:18429939). Probable TREX-2 component required for nuclear RNA export. The TREX-2 complex (transcription and export complex 2) functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (PubMed:19843313). {ECO:0000269|PubMed:18429939, ECO:0000269|PubMed:19843313}. 47614,36381 Enhanced ethylene response protein 5 (Nuclear mRNA export protein THP1) (AtTHP1),Proteasome family protein nucleus [GO:0005634]; transcription export complex 2 [GO:0070390]; double-stranded DNA binding [GO:0003690]; RNA binding [GO:0003723]; ethylene-activated signaling pathway [GO:0009873]; nuclear retention of pre-mRNA at the site of transcription [GO:0071033]; poly(A)+ mRNA export from nucleus [GO:0016973]; posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000973]; response to ethylene [GO:0009723]; root development [GO:0048364]; transcription elongation from RNA polymerase II promoter [GO:0006368],proteasome complex [GO:0000502] TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, stems and shoots (PubMed:18429939). Detected in seedlings, roots, leaves and anthers (PubMed:19843313). {ECO:0000269|PubMed:18429939, ECO:0000269|PubMed:19843313}. locus:2050414; AT2G19560 PCI domain-containing protein Os09g0386400 protein (Proteasome protein-like) (cDNA clone:001-113-B11, full insert sequence) Q6H592 Q6H592_ORYSJ Os09g0386400 Os09g0386400 OSJNBa0048A13.15 OSNPB_090386400 ENOG411DQJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411DQJA Q3EDA9 PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830 69669 Putative pentatricopeptide repeat-containing protein At1g16830 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2015671; AT1G16830 Pentatricopeptide repeat-containing protein Os10g0578500 protein (Pentatricopeptide, putative, expressed) Q7XBT9 Q7XBT9_ORYSJ Os10g0578500 LOC_Os10g42760 OSNPB_100578500 ENOG411E5TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411DQJN ABCC13 Q9SKX0,A0A1P8AYI4,A0A1P8AYL1,A0A1P8AYP5,A0A1P8AYK9,A0A1P8AYJ8 AB13C_ARATH,A0A1P8AYI4_ARATH,A0A1P8AYL1_ARATH,A0A1P8AYP5_ARATH,A0A1P8AYK9_ARATH,A0A1P8AYJ8_ARATH ABC transporter C family member 13 (ABC transporter ABCC.13) (AtABCC13) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 11) (Glutathione S-conjugate-transporting ATPase 11) (Multidrug resistance-associated protein 11),Multidrug resistance-associated protein 11 FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}. ARA:AT2G07680-MONOMER; 3.6.3.44 157870,156701,157918,133336,159321,148188 ABC transporter C family member 13 (ABC transporter ABCC.13) (AtABCC13) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 11) (Glutathione S-conjugate-transporting ATPase 11) (Multidrug resistance-associated protein 11),Multidrug resistance-associated protein 11 integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}. AT2G07680 ABC transporter C family member Os06g0184766 protein,Os06g0184700 protein A0A0P0WTU4,A0A0P0WTX5 A0A0P0WTU4_ORYSJ,A0A0P0WTX5_ORYSJ Os06g0184766 OSNPB_060184766,Os06g0184700 OSNPB_060184700 ENOG411DQJM EMB2750 Q9SQU6 PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic (Protein EMBRYO DEFECTIVE 2750) Embryo defective; Globular-D. Meinke-2003 55699 Pentatricopeptide repeat-containing protein At3g06430, chloroplastic (Protein EMBRYO DEFECTIVE 2750) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; rRNA binding [GO:0019843]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; pollen tube development [GO:0048868]; RNA modification [GO:0009451] locus:2081041; AT3G06430 Pentatricopeptide repeat-containing protein Os03g0309800 protein (PPR2, putative, expressed) (cDNA clone:001-035-H05, full insert sequence) (cDNA clone:001-207-G09, full insert sequence) (cDNA clone:J013024C10, full insert sequence) (cDNA clone:J013108I11, full insert sequence) Q10MG3 Q10MG3_ORYSJ Os03g0309800 LOC_Os03g19650 Os03g0309800 OsJ_10586 OSNPB_030309800 ENOG411DQJK MBB18.15 Q8LD15,Q93YW4,A0A1P8BEL7,A0A1P8AV71,A0A1P8BEL3,F4HRT3 Q8LD15_ARATH,Q93YW4_ARATH,A0A1P8BEL7_ARATH,A0A1P8AV71_ARATH,A0A1P8BEL3_ARATH,F4HRT3_ARATH At1g67210 (Family protein/zinc knuckle) (Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein),Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (Uncharacterized protein At5g38600),Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 45646,60550,51002,34627,49635,45476 At1g67210 (Family protein/zinc knuckle) (Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein),Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (Uncharacterized protein At5g38600),Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2809302;,locus:2159818; AT1G67210,AT5G38600 PSP Os06g0495700 protein A0A0P0WXA2 A0A0P0WXA2_ORYSJ Os06g0495700 OSNPB_060495700 ENOG411DQJJ Q8GUN7,Q8RY94,F4I1L9 Q8GUN7_ARATH,Q8RY94_ARATH,F4I1L9_ARATH Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) PATHWAY: Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 2/2. {ECO:0000256|RuleBase:RU361172}.; PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2. {ECO:0000256|RuleBase:RU361172}. ARA:AT1G36280-MONOMER;,ARA:AT4G18440-MONOMER; R-ATH-73817; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Alanine, aspartate and glutamate metabolism (00250),Metabolic pathways (01100) 4.3.2.2 58816,59757,57850 Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) chloroplast stroma [GO:0009570]; (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]; 'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]; 'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189],(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]; 'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189] locus:2013215;,locus:2124494; AT1G36280,AT4G18440 Adenylosuccinate lyase Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) Q10MD1 Q10MD1_ORYSJ Os03g0313600 LOC_Os03g19930 Os03g0313600 OSNPB_030313600 ENOG411DQJI YAB3 Q9XFB1,A8MRG7 YAB3_ARATH,A8MRG7_ARATH Axial regulator YABBY 3,AT4G00180 protein (Plant-specific transcription factor YABBY family protein) DISRUPTION PHENOTYPE: Leaves polarity and growth defects. {ECO:0000269|PubMed:19837869}. FUNCTION: Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}. 26338,23171 Axial regulator YABBY 3,AT4G00180 protein (Plant-specific transcription factor YABBY family protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abaxial cell fate specification [GO:0010158]; fruit development [GO:0010154]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of leaf development [GO:2000024]; regulation of shoot apical meristem development [GO:1902183]; regulation of transcription, DNA-templated [GO:0006355],multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo the expression starts during the heart stage in the cotyledon anlagen. Later, expression expands to abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. TISSUE SPECIFICITY: Expressed in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699}. locus:2126931; AT4G00180 cell differentiation Protein YABBY 5 (OsYAB3) (OsYABBY5) Q0JBF0 YAB5_ORYSJ YAB5 Os04g0536300 LOC_Os04g45330 OsJ_014945 OSJNBb0020O11.2 FUNCTION: May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. ENOG411DQJH Q3E6Y3,Q9SHQ2,Q9FXJ4 Y1869_ARATH,Q9SHQ2_ARATH,Q9FXJ4_ARATH Uncharacterized protein At1g28695,Expressed protein (F1K23.10) (Glycosyltransferase) (Nucleotide-diphospho-sugar transferase family protein),F1K23.9 (Glycosyltransferase) (Nucleotide-diphospho-sugar transferase family protein) (Uncharacterized protein At1g28710) 37917,38541,38873 Uncharacterized protein At1g28695,Expressed protein (F1K23.10) (Glycosyltransferase) (Nucleotide-diphospho-sugar transferase family protein),F1K23.9 (Glycosyltransferase) (Nucleotide-diphospho-sugar transferase family protein) (Uncharacterized protein At1g28710) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; transferase activity [GO:0016740]; RNA modification [GO:0009451],integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; transferase activity [GO:0016740]; RNA modification [GO:0009451] locus:1006230710;,locus:2018688;,locus:2018783; AT1G28695,AT1G28700,AT1G28710 Nucleotide-diphospho-sugar transferase Expressed protein (Os03g0731800 protein) (Regulatory protein, putative, expressed) (cDNA clone:001-127-H12, full insert sequence) Q6AVG5 Q6AVG5_ORYSJ OSJNBa0079G12.19 LOC_Os03g52160 Os03g0731800 OSNPB_030731800 ENOG411DQJW F23M19.1 Q9LTX5,Q9XID7 Q9LTX5_ARATH,Q9XID7_ARATH Alpha/beta-Hydrolases superfamily protein (Similarity to alpha/beta hydrolase),Alpha/beta-Hydrolases superfamily protein (F23M19.1 protein) (Late embryogenesis abundant protein, putative 78257-75162) ARA:GQT-1379-MONOMER;,ARA:GQT-2345-MONOMER; 60466,59670 Alpha/beta-Hydrolases superfamily protein (Similarity to alpha/beta hydrolase),Alpha/beta-Hydrolases superfamily protein (F23M19.1 protein) (Late embryogenesis abundant protein, putative 78257-75162) integral component of membrane [GO:0016021]; hydrolase activity, acting on ester bonds [GO:0016788]; cellular lipid metabolic process [GO:0044255] locus:2158854;,locus:2026140; AT5G49950,AT1G34340 embryogenesis-associated protein EMB8-like Os05g0432600 protein (Putative embryogenesis-associated protein) (cDNA clone:J033088B21, full insert sequence),Os01g0871100 protein (Putative lung alpha/beta hydrolase protein 1) Q6I5U7,Q5NA00 Q6I5U7_ORYSJ,Q5NA00_ORYSJ Os05g0432600 OJ1301_G07.6 OJ1378_A04.11 OsJ_18649 OSNPB_050432600,Os01g0871100 Os01g0871100 OSNPB_010871100 P0039A07.22 ENOG411DQJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os05g0106500 protein (cDNA clone:J033131N14, full insert sequence) Q65XH9 Q65XH9_ORYSJ Os05g0106500 OsJ_16820 OSJNBb0035J08.14 OSNPB_050106500 ENOG411DQJU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic integral membrane protein (DUF1751) Os04g0103300 protein (cDNA clone:001-039-A02, full insert sequence) (cDNA clone:J013051M22, full insert sequence) (cDNA clone:J033029B20, full insert sequence) Q0JFH4 Q0JFH4_ORYSJ Os04g0103300 Os04g0103300 OSNPB_040103300 ENOG411DQJT OPT3 O23482 OPT3_ARATH Oligopeptide transporter 3 (AtOPT3) Embryo defective; Preglobular-G. Stacey-2003 FUNCTION: May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. Acts also as a metal transporter that could be a component of the copper transport machinery. Essential for early embryo development. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:12417702, ECO:0000269|PubMed:13129917}. 82441 Oligopeptide transporter 3 (AtOPT3) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; oligopeptide transporter activity [GO:0015198]; transition metal ion transmembrane transporter activity [GO:0046915]; cellular metal ion homeostasis [GO:0006875]; iron ion homeostasis [GO:0055072]; multicellular organism development [GO:0007275]; protein transport [GO:0015031]; xylem-to-phloem iron transport [GO:1990388] DEVELOPMENTAL STAGE: Expressed 2 to 4 hours after fertilization in the embryo sac and subsequently in developing maternal tissues. By the globular stage, expression is observed in the developing endosperm, integument layers, the embryo proper, and the suspensor of the developing embryo. From the heart stage onward, expression observed in the embryo but neither in the suspensor nor in the endosperm and integument tissues. {ECO:0000269|PubMed:12417702}. TISSUE SPECIFICITY: Strong expression in flowers, leaves and roots. Preferentially expressed in the vascular tissues of seedlings and mature plants as well as in pollen and developing embryos. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:12417702}. locus:2130529; AT4G16370 oligopeptide transporter Oligopeptide transporter 3, putative, expressed (Os03g0751100 protein) (Putative oligopeptide transporter protein),Os03g0751100 protein (Fragment) Q75LM0,A0A0P0W3R8 Q75LM0_ORYSJ,A0A0P0W3R8_ORYSJ OSJNBa0047E24.17 LOC_Os03g54000 Os03g0751100 OsJ_12589 OSNPB_030751100,Os03g0751100 OSNPB_030751100 ENOG411DQJS MKK9,MKK5,MKK7,MKK4 Q9FX43,Q8RXG3,Q9LPQ3,O80397 M2K9_ARATH,M2K5_ARATH,M2K7_ARATH,M2K4_ARATH Mitogen-activated protein kinase kinase 9 (AtMKK9) (MAP kinase kinase 9) (EC 2.7.12.2),Mitogen-activated protein kinase kinase 5 (AtMAP2Kalpha) (AtMEK5) (AtMKK5) (MAP kinase kinase 5) (EC 2.7.12.2),Mitogen-activated protein kinase kinase 7 (AtMKK7) (MAP kinase kinase 7) (EC 2.7.12.2) (Protein BUSHY AND DWARF 1),Mitogen-activated protein kinase kinase 4 (AtMKK4) (MAP kinase kinase 4) (EC 2.7.12.2) DISRUPTION PHENOTYPE: Broad spectrum of moderate ethylene-insensitive phenotypes. Reduced salt sensitivity. Delayed senescence phenotype. {ECO:0000269|PubMed:18273012, ECO:0000269|PubMed:18693252, ECO:0000269|PubMed:19251906}.,DISRUPTION PHENOTYPE: RNAi double mutants MKK4 and MKK5 have a strong abscission defect. RNAi mutant MKK5 shows super-sensitivity to high light stress. {ECO:0000269|PubMed:18809915, ECO:0000269|PubMed:23677921}.,DISRUPTION PHENOTYPE: RNAi double mutants MKK4 and MKK5 have a strong abscission defect. Higher sensitivity to high salt and drought stresses. {ECO:0000269|PubMed:18809915, ECO:0000269|PubMed:21806969}. bud1 plants develop significantly fewer lateral roots simpler venation patterns and a quicker and greater curvature in the gravitropism assay. In addition the bud1 plants have shorter hypocotyls at high temperature (29C) under light which is a characteristic feature of defective auxin action. Determination of tritium-labeled indole-3-acetic acid transport showed that the increased expression of MKK7 in bud1 or the repressed expression in MKK7 antisense transgenic plants causes deficiency or enhancement in auxin transport indicating that MKK7 negatively regulates polar auxin transport. FUNCTION: MKK9-MPK3/MPK6 module phosphorylates and activates EIN3, leading to the promotion of EIN3-mediated transcription in ethylene signaling. Autophosphorylates and also phosphorylates MPK3 and MPK6. Plays an important role in ethylene and camalexin biosynthesis and in salt stress response. MKK9-MPK6 module positively regulates leaf senescence. {ECO:0000269|PubMed:18273012, ECO:0000269|PubMed:18693252, ECO:0000269|PubMed:19251906}.,FUNCTION: Involved in the second phase of hydrogen peroxide generation during hypersensitive response-like cell death. Involved in the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6) downstream of bacterial flagellin receptor FLS2. Activates by phosphorylation the downstream MPK3 and MPK6. YDA-MKK4/MKK5-MPK3/MPK6 module regulates stomatal cell fate before the guard mother cell (GMC) is specified. This MAPK cascade also functions downstream of the ER receptor in regulating coordinated local cell proliferation, which shapes the morphology of plant organs. MKK4 and MKK5 participate in the regulation of floral organ abscission. Target of the Pseudomonas syringae type III effector HopF2, that inhibits the activation of the downstream MPK6 and PAMP-triggered immunity. Plays a critical role in high light stress tolerance by the mediation of the Cu/Zn SODs CSD1 and CSD2 gene expression. Phosphorylates BZR1 in vitro. {ECO:0000269|PubMed:11687590, ECO:0000269|PubMed:11875555, ECO:0000269|PubMed:17259259, ECO:0000269|PubMed:18268539, ECO:0000269|PubMed:18809915, ECO:0000269|PubMed:20571112, ECO:0000269|PubMed:23263767, ECO:0000269|PubMed:23341468, ECO:0000269|PubMed:23677921, ECO:0000269|PubMed:24019147}.,FUNCTION: May function as a negative regulator of polar auxin transport. Positively regulates plant basal and systemic acquired resistance (SAR). Activates MPK3 and MPK6 in vitro. {ECO:0000269|PubMed:16377756, ECO:0000269|PubMed:17908155, ECO:0000269|PubMed:18273012}.,FUNCTION: Involved in the second phase of hydrogen peroxide generation during hypersensitive response-like cell death. Involved in the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6) downstream of bacterial flagellin receptor FLS2. Activates by phosphorylation the downstream MPK3 and MPK6. YDA-MKK4/MKK5-MPK3/MPK6 module regulates stomatal cell fate before the guard mother cell (GMC) is specified. This MAPK cascade also functions downstream of the ER receptor in regulating coordinated local cell proliferation, which shapes the morphology of plant organs. MKK4 and MKK5 participate in the regulation of floral organ abscission. Mediates osmotic-stress response via its regulation of MPK3 activity. Target of the Pseudomonas syringae type III effector HopF2. {ECO:0000269|PubMed:11687590, ECO:0000269|PubMed:11875555, ECO:0000269|PubMed:17259259, ECO:0000269|PubMed:18809915, ECO:0000269|PubMed:21806969, ECO:0000269|PubMed:23263767, ECO:0000269|PubMed:23341468}. MISCELLANEOUS: Overexpression of MKK5 (mutant bud1) causes deficiency in polar auxin transport and leads to plant architectural abnormality (PubMed:16377756). The bud1 mutant accumulates elevated levels of SA, and exhibits constitutive PR gene expression and enhanced resistance to both bacterial and oomycete pathogens (PubMed:17908155). {ECO:0000305|PubMed:16377756, ECO:0000305|PubMed:17908155}. R-ATH-110056;R-ATH-112411;R-ATH-2559580;R-ATH-445144;R-ATH-450302;R-ATH-5674135;R-ATH-5674499; 2.7.12.2 34347,38329,34272,40117 Mitogen-activated protein kinase kinase 9 (AtMKK9) (MAP kinase kinase 9) (EC 2.7.12.2),Mitogen-activated protein kinase kinase 5 (AtMAP2Kalpha) (AtMEK5) (AtMKK5) (MAP kinase kinase 5) (EC 2.7.12.2),Mitogen-activated protein kinase kinase 7 (AtMKK7) (MAP kinase kinase 7) (EC 2.7.12.2) (Protein BUSHY AND DWARF 1),Mitogen-activated protein kinase kinase 4 (AtMKK4) (MAP kinase kinase 4) (EC 2.7.12.2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase kinase activity [GO:0004708]; protein kinase activator activity [GO:0030295]; protein serine/threonine kinase activity [GO:0004674]; camalexin biosynthetic process [GO:0010120]; ethylene biosynthetic process [GO:0009693]; ethylene-activated signaling pathway [GO:0009873]; leaf senescence [GO:0010150]; positive regulation of transcription, DNA-templated [GO:0045893]; protein autophosphorylation [GO:0046777]; regulation of mitotic cell cycle [GO:0007346]; response to fungus [GO:0009620]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; defense response, incompatible interaction [GO:0009814]; floral organ abscission [GO:0010227]; inflorescence development [GO:0010229]; plant-type hypersensitive response [GO:0009626]; positive regulation of ethylene biosynthetic process [GO:0010365]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; MAP kinase kinase activity [GO:0004708]; protein serine/threonine kinase activity [GO:0004674]; auxin polar transport [GO:0009926]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; regulation of mitotic cell cycle [GO:0007346]; stress-activated protein kinase signaling cascade [GO:0031098]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862],chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response, incompatible interaction [GO:0009814]; floral organ abscission [GO:0010227]; inflorescence development [GO:0010229]; plant-type hypersensitive response [GO:0009626]; regulation of mitotic cell cycle [GO:0007346]; stress-activated protein kinase signaling cascade [GO:0031098] TISSUE SPECIFICITY: Expressed higher in stems and leaves than in flowers and roots. {ECO:0000269|PubMed:10048483, ECO:0000269|Ref.2}.,TISSUE SPECIFICITY: Expressed in all tissues, with a relatively higher level in leaves and lower level in roots and flowers. {ECO:0000269|PubMed:16377756}.,TISSUE SPECIFICITY: Expressed higher in stems and leaves than in flowers and roots. {ECO:0000269|PubMed:10048483, ECO:0000269|PubMed:21806969}. locus:2206885;,locus:2094761;,locus:2014099;,locus:2017662; AT1G73500,AT3G21220,AT1G18350,AT1G51660 mitogen-activated protein kinase kinase Os06g0191500 protein (Putative mitogen-activated protein kinase kinase),Os06g0191300 protein (Putative MAP kinase kinase),Os02g0787300 protein (Putative MAP kinase kinase) (cDNA clone:J013126P12, full insert sequence),Os03g0225100 protein (Protein kinase domain containing protein, expressed) (cDNA clone:006-205-E09, full insert sequence),Os03g0713500 protein (Fragment) Q69TJ6,Q69TJ8,Q69TJ7,Q6K4Q0,Q8H7S4,A0A0P0W273 Q69TJ6_ORYSJ,Q69TJ8_ORYSJ,Q69TJ7_ORYSJ,Q6K4Q0_ORYSJ,Q8H7S4_ORYSJ,A0A0P0W273_ORYSJ OSJNBa0090D06.40 Os06g0191500 OSNPB_060191500,OSJNBa0090D06.37-1 Os06g0191300 OSNPB_060191300,OSJNBa0090D06.37-2 Os06g0191300 OSNPB_060191300,Os02g0787300 OJ1316_E06.24 OSJNBa0054K20.10 OSNPB_020787300,OSJNBa0081P02.7 LOC_Os03g12390 Os03g0225100 OsJ_09983 OSNPB_030225100,Os03g0713500 OSNPB_030713500 ENOG411DQJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os07g0196300 protein,Os07g0197000 protein Q6ZDP9,A0A0P0X3E9 Q6ZDP9_ORYSJ,A0A0P0X3E9_ORYSJ Os07g0196300 OJ1715_A07.31 OsJ_23442 OSNPB_070196300 P0589E08.14,Os07g0197000 OSNPB_070197000 ENOG411DQJQ PCMP-H32 Q9LW63,A0A1I9LMC5 PP251_ARATH,A0A1I9LMC5_ARATH Putative pentatricopeptide repeat-containing protein At3g23330,Tetratricopeptide repeat (TPR)-like superfamily protein 80059,68093 Putative pentatricopeptide repeat-containing protein At3g23330,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451],zinc ion binding [GO:0008270] locus:2090910; AT3G23330 Pentatricopeptide repeat-containing protein Os07g0578800 protein A0A0P0X8U1 A0A0P0X8U1_ORYSJ Os07g0578800 OSNPB_070578800 ENOG411DQJP XRCC2 Q682D3,A0A1P8BBF0,A0A1P8BBG3,A0A1P8BBI8,A0A1P8BBH3,A0A1P8BBF9,A0A1P8BBG6,A0A1P8BBF2,A0A1P8BBG4,F4KDQ6 XRCC2_ARATH,A0A1P8BBF0_ARATH,A0A1P8BBG3_ARATH,A0A1P8BBI8_ARATH,A0A1P8BBH3_ARATH,A0A1P8BBF9_ARATH,A0A1P8BBG6_ARATH,A0A1P8BBF2_ARATH,A0A1P8BBG4_ARATH,F4KDQ6_ARATH DNA repair protein XRCC2 homolog (X-ray repair cross-complementing protein 2 homolog) (AtXRCC2),Homolog of X-ray repair cross complementing 2 (XRCC2) FUNCTION: Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions. {ECO:0000250}. R-ATH-5693616; 42361,35520,41821,32986,43113,39522,24056,38770,42573,39011 DNA repair protein XRCC2 homolog (X-ray repair cross-complementing protein 2 homolog) (AtXRCC2),Homolog of X-ray repair cross complementing 2 (XRCC2) Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; double-strand break repair via homologous recombination [GO:0000724]; meiotic DNA recombinase assembly [GO:0000707]; mitotic recombination [GO:0006312]; reciprocal meiotic recombination [GO:0007131]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148],Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; double-strand break repair via homologous recombination [GO:0000724] locus:2174759; AT5G64520 DNA repair protein XRCC2 homolog Os01g0870300 protein,Os01g0870201 protein A0A0P0VB02,A0A0P0VB18 A0A0P0VB02_ORYSJ,A0A0P0VB18_ORYSJ Os01g0870300 OSNPB_010870300,Os01g0870201 OSNPB_010870201 ENOG411DQJZ Q9ZV90,O80774,Q8RWJ5,A0A1P8AMZ3 Q9ZV90_ARATH,O80774_ARATH,Q8RWJ5_ARATH,A0A1P8AMZ3_ARATH F9K20.24 protein (SecY protein transport family protein),AT2G34250 protein (At2g34250/F13P17.9) (SecY protein transport family protein) (Uncharacterized protein At2g34250),SecY protein transport family protein (Uncharacterized protein At1g29310),SecY protein transport family protein R-ATH-381038; Phagosome (04145),Protein export (03060),Vibrio cholerae infection (05110),Protein processing in endoplasmic reticulum (04141) 52131,52097,52068,51874 F9K20.24 protein (SecY protein transport family protein),AT2G34250 protein (At2g34250/F13P17.9) (SecY protein transport family protein) (Uncharacterized protein At2g34250),SecY protein transport family protein (Uncharacterized protein At1g29310),SecY protein transport family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; protein transport [GO:0015031],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; protein transport [GO:0015031] locus:2037483;,locus:2040909;,locus:2029894; AT1G78720,AT2G34250,AT1G29310 protein transport protein sec61 Os12g0625900 protein,Os09g0512000 protein,Os03g0692300 protein,Os09g0512600 protein,Os12g0612625 protein,Os12g0612600 protein,Os12g0627700 protein,Os12g0625966 protein Q2QLW6,Q0J0G0,A0A0P0W238,A0A0N7KR36,A0A0P0YCH0,A0A0N7KUC7,A0A0P0YD21,A0A0P0YCN2 Q2QLW6_ORYSJ,Q0J0G0_ORYSJ,A0A0P0W238_ORYSJ,A0A0N7KR36_ORYSJ,A0A0P0YCH0_ORYSJ,A0A0N7KUC7_ORYSJ,A0A0P0YD21_ORYSJ,A0A0P0YCN2_ORYSJ Os12g0625900 LOC_Os12g43070 OsJ_36945 OSNPB_120625900,Os09g0512000 Os09g0512000 OsJ_29987 OSNPB_090512000,Os03g0692300 OSNPB_030692300,Os09g0512600 OSNPB_090512600,Os12g0612625 OSNPB_120612625,Os12g0612600 OSNPB_120612600,Os12g0627700 OSNPB_120627700,Os12g0625966 OSNPB_120625966 ENOG411DQJY GSTF13 Q9LZI9 GSTFD_ARATH Glutathione S-transferase F13 (AtGSTF13) (EC 2.5.1.18) (GST class-phi member 13) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT3G62760-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 24652 Glutathione S-transferase F13 (AtGSTF13) (EC 2.5.1.18) (GST class-phi member 13) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2081695; AT3G62760 Glutathione Probable glutathione S-transferase GSTF1 (EC 2.5.1.18) (GST-I),Os01g0370200 protein (Putative glutathione transferase),Os01g0370900 protein (Fragment) O65857,Q9AS59,A0A0P0V328 GSTF1_ORYSJ,Q9AS59_ORYSJ,A0A0P0V328_ORYSJ GSTF1 RGST I Os01g0371200 LOC_Os01g27360 B1039D07.2 OsJ_01799 P0493G01.33,Os01g0370200 Os01g0370200 OSNPB_010370200 P0493G01.15,Os01g0370900 OSNPB_010370900 FUNCTION: Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. ENOG411DQJX Q9LYL9 Y3623_ARATH BTB/POZ domain-containing protein At3g56230 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 31763 BTB/POZ domain-containing protein At3g56230 cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2078421; AT3G56230 BTB POZ domain-containing protein BTB/POZ domain containing protein, expressed (Os12g0111500 protein) (cDNA clone:006-305-B10, full insert sequence) (cDNA clone:006-305-E01, full insert sequence),BTB/POZ domain containing protein, expressed (Os11g0111900 protein) (cDNA clone:006-306-D04, full insert sequence) (cDNA clone:006-310-F06, full insert sequence) Q2QYP1,Q2RBG8 Q2QYP1_ORYSJ,Q2RBG8_ORYSJ LOC_Os12g02030 Os12g0111500 OsJ_34976 OSNPB_120111500,Os11g0111900 LOC_Os11g02070 Os11g0111900 OsJ_32688 OSNPB_110111900 ENOG411E5TN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0055C08.12 protein (Os04g0393100 protein),OSJNBa0055C08.13 protein (Os04g0393200 protein),Os04g0392500 protein,Os04g0392300 protein Q7XRU6,Q7XRU5,A0A0N7KIZ3,A0A0P0WA03 Q7XRU6_ORYSJ,Q7XRU5_ORYSJ,A0A0N7KIZ3_ORYSJ,A0A0P0WA03_ORYSJ Os04g0393100 OsJ_14608 OSJNBa0055C08.12 OSNPB_040393100,OSJNBa0055C08.13 Os04g0393200 OSNPB_040393200,Os04g0392500 OSNPB_040392500,Os04g0392300 OSNPB_040392300 ENOG411E5TI Q9FLV1 Q9FLV1_ARATH 60S acidic ribosomal protein family (60s acidic ribosomal protein P1) (Putative 60S acidic ribosomal protein P1) R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 11980 60S acidic ribosomal protein family (60s acidic ribosomal protein P1) (Putative 60S acidic ribosomal protein P1) cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; protein kinase activator activity [GO:0030295]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; positive regulation of protein kinase activity [GO:0045860]; translational elongation [GO:0006414] locus:2153904; AT5G24510 60S acidic ribosomal protein Os08g0116500 protein (Putative acidic ribosomal protein P1a) (cDNA clone:001-011-G09, full insert sequence) Q69UI8 Q69UI8_ORYSJ Os08g0116500 OsJ_25823 OSNPB_080116500 P0470F10.11 ENOG411DTAS WRKY14,WRKY35 Q9SA80,O64747,A0A1P8AZG0 WRK14_ARATH,WRK35_ARATH,A0A1P8AZG0_ARATH Probable WRKY transcription factor 14 (AR411) (WRKY DNA-binding protein 14),Probable WRKY transcription factor 35 (WRKY DNA-binding protein 35),WRKY DNA-binding protein 35 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 46802,46280,47367 Probable WRKY transcription factor 14 (AR411) (WRKY DNA-binding protein 14),Probable WRKY transcription factor 35 (WRKY DNA-binding protein 35),WRKY DNA-binding protein 35 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555]; transcription, DNA-templated [GO:0006351] locus:2204549;,locus:2044777; AT1G30650,AT2G34830 WRKY transcription factor Os02g0698800 protein (Putative WRKY DNA-binding protein),Os04g0597300 protein Q6Z8E9,Q0JAI8 Q6Z8E9_ORYSJ,Q0JAI8_ORYSJ Os02g0698800 Os02g0698800 OSNPB_020698800 P0459B01.19,Os04g0597300 Os04g0597300 OSNPB_040597300 ENOG411DTAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit Os04g0584500 protein (cDNA clone:J013127I09, full insert sequence) B7EPT4 B7EPT4_ORYSJ Os04g0584500 OSNPB_040584500 ENOG411DTAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-methyltransferase Os09g0481400 protein (Putative Caffeoyl-CoA O-methyltransferase) (cDNA clone:002-143-F02, full insert sequence) Q69QR4 Q69QR4_ORYSJ Os09g0481400 OsJ_29779 OSNPB_090481400 P0463D04.22 P0463G11.37 ENOG411DTAZ Q949X1,A0A1P8BCT0 Q949X1_ARATH,A0A1P8BCT0_ARATH Glutamyl-tRNA (Gln) amidotransferase subunit C (Uncharacterized protein At5g17460),Glutamyl-tRNA (Gln) amidotransferase subunit C 35919,27192 Glutamyl-tRNA (Gln) amidotransferase subunit C (Uncharacterized protein At5g17460),Glutamyl-tRNA (Gln) amidotransferase subunit C transferase activity [GO:0016740] locus:2157462; AT5G17460 NA Os01g0125700 protein (cDNA clone:J033108C20, full insert sequence) Q5ZCC0 Q5ZCC0_ORYSJ Os01g0125700 Os01g0125700 OsJ_00209 OSNPB_010125700 P0037C04.34 ENOG411DTAC GATL4 Q9M8J2 GATL4_ARATH Probable galacturonosyltransferase-like 4 (EC 2.4.1.-) (Galactinol synthase 9) (AtGolS9) (GolS-9) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 40337 Probable galacturonosyltransferase-like 4 (EC 2.4.1.-) (Galactinol synthase 9) (AtGolS9) (GolS-9) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; pollen tube [GO:0090406]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489]; polysaccharide biosynthetic process [GO:0000271] locus:2082450; AT3G06260 Galacturonosyltransferase-like Hexosyltransferase (EC 2.4.1.-) Q10L41,Q8LIF5 Q10L41_ORYSJ,Q8LIF5_ORYSJ LOC_Os03g24510 Os03g0359600 OsJ_10917 OSNPB_030359600,OJ1316_A04.104 P0503D09.121 Os07g0646800 OsJ_25360 OSNPB_070646800 ENOG411DTAB 4CLL9 Q84P23 4CLL9_ARATH 4-coumarate--CoA ligase-like 9 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 4) (At4CL4) FUNCTION: Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA. {ECO:0000269|PubMed:15677481}. ARA:AT5G63380-MONOMER; 6.2.1.- 61278 4-coumarate--CoA ligase-like 9 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 4) (At4CL4) peroxisome [GO:0005777]; ATP binding [GO:0005524]; fatty-acyl-CoA synthase activity [GO:0004321]; ligase activity [GO:0016874]; jasmonic acid biosynthetic process [GO:0009695]; oxylipin biosynthetic process [GO:0031408] locus:2158559; AT5G63380 4-coumarate--CoA ligase-like 4-coumarate--CoA ligase-like 5 (EC 6.2.1.-),4-coumarate--CoA ligase-like 6 (EC 6.2.1.-),Os01g0901500 protein Q7F1X5,Q8RU95,A0A0P0VBX1 4CLL5_ORYSJ,4CLL6_ORYSJ,A0A0P0VBX1_ORYSJ 4CLL5 Os01g0901500 LOC_Os01g67530 B1065G12.9,4CLL6 Os01g0901600 LOC_Os01g67540 B1065G12.10 P0551C06.10,Os01g0901500 OSNPB_010901500 ENOG411DTAA Q9LMX9 Q9LMX9_ARATH F21F23.12 protein (PLC-like phosphodiesterases superfamily protein) 38789 F21F23.12 protein (PLC-like phosphodiesterases superfamily protein) phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] locus:2023898; AT1G13680 PI-PLC X domain-containing protein Expressed protein (MAP3K-like protein kinase, putative, expressed) (Os03g0415200 protein) (cDNA clone:002-120-C04, full insert sequence) Q75IX4 Q75IX4_ORYSJ OSJNBb0059G13.6 LOC_Os03g30130 Os03g0415200 OsJ_11265 OSNPB_030415200 ENOG411E2M2 O64824 O64824_ARATH Putative RING zinc finger protein (RING/U-box superfamily protein) R-ATH-382556;R-ATH-901032; 25181 Putative RING zinc finger protein (RING/U-box superfamily protein) Derlin-1 retrotranslocation complex [GO:0036513]; integral component of membrane [GO:0016021]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ER-associated misfolded protein catabolic process [GO:0071712]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2049023; AT2G23780 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E2M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21 kDa protein Os06g0711800 protein (cDNA clone:J023026F11, full insert sequence) Q0D9K6 Q0D9K6_ORYSJ Os06g0711800 Os06g0711800 OSNPB_060711800 ENOG411E2M6 FHIT F4KEV7 FHIT_ARATH Bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT (EC 3.6.1.29) (EC 3.6.2.1) (Fragile histidine triad protein) (Purine nucleoside phosphoramidase FHIT) (EC 3.9.1.-) FUNCTION: Possesses dinucleoside triphosphate hydrolase activity. Cleaves P(1)-P(3)-bis(5'-adenosyl) triphosphate (Ap3A) to yield AMP and ADP. In addition, possesses adenylylsulfatase and nucleoside phosphoramidase activities. Liberates AMP from natural metabolites such as 5'-adenylyl sulfate and adenosine 5'-phosphoramidate. Recognizes synthetic nucleotides, such as adenosine 5'-O-phosphorofluoridate and adenosine 5'-O-(gamma-fluorotriphosphate), and releases AMP from them. {ECO:0000269|PubMed:18694747}. 3.6.1.29; 3.6.2.1; 3.9.1.- 20400 Bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT (EC 3.6.1.29) (EC 3.6.2.1) (Fragile histidine triad protein) (Purine nucleoside phosphoramidase FHIT) (EC 3.9.1.-) cytosol [GO:0005829]; adenosine 5'-monophosphoramidase activity [GO:0043530]; adenylylsulfatase activity [GO:0047627]; bis(5'-adenosyl)-triphosphatase activity [GO:0047710]; nucleotide binding [GO:0000166] locus:2161313; AT5G58240 HIT domain Os12g0120400 protein (Fragment),Os12g0120200 protein,Os11g0120600 protein,Os11g0120725 protein,Os09g0246250 protein (Fragment) Q0IQH7,A0A0P0Y6S0,A0A0P0XY71,A0A0N7KSC7,A0A0N7KQE7 Q0IQH7_ORYSJ,A0A0P0Y6S0_ORYSJ,A0A0P0XY71_ORYSJ,A0A0N7KSC7_ORYSJ,A0A0N7KQE7_ORYSJ Os12g0120400 Os12g0120400 OSNPB_120120400,Os12g0120200 OSNPB_120120200,Os11g0120600 OSNPB_110120600,Os11g0120725 OSNPB_110120725,Os09g0246250 OSNPB_090246250 ENOG411E2M5 Q8GWP6 Q8GWP6_ARATH Selenoprotein family protein (Uncharacterized protein At1g05720) (Uncharacterized protein At1g05720/F3F20_17) 18574 Selenoprotein family protein (Uncharacterized protein At1g05720) (Uncharacterized protein At1g05720/F3F20_17) locus:2031928; AT1G05720 15 kDa selenoprotein-like Os01g0894500 protein (Selenoprotein-like) (cDNA clone:J033125C09, full insert sequence) (p0696G06.11 protein) Q8S0K1 Q8S0K1_ORYSJ P0696G06.11 Os01g0894500 B1078G07.47 OsJ_04387 OSNPB_010894500 ENOG411E2M8 MYB15 Q9LTC4,F4J2X8 MYB15_ARATH,F4J2X8_ARATH Transcription factor MYB15 (Myb-related protein 15) (AtMYB15) (Myb-related protein Y19) (AtY19),Myb domain protein 15 FUNCTION: Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. MISCELLANEOUS: Plants over-expressing MYB15 have improved drought and salt tolerance. {ECO:0000269|PubMed:19161942}. 32042,25526 Transcription factor MYB15 (Myb-related protein 15) (AtMYB15) (Myb-related protein Y19) (AtY19),Myb domain protein 15 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to chitin [GO:0010200]; response to cold [GO:0009409]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (PubMed:17015446, PubMed:19161942). Expressed in stomatal guard cells (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. locus:2086233; AT3G23250 Myb-related protein Transcription factor MYB4 (Myb-related protein 4) (OsMyb4) (Transcription factor RLTR1),Transcription factor MYB30 (OsMYB30),Os04g0517100 protein (Fragment) Q7XBH4,Q6K1S6,A0A0P0WCK0 MYB4_ORYSJ,MYB30_ORYSJ,A0A0P0WCK0_ORYSJ MYB4 LTR1 Os04g0517100 LOC_Os04g43680 OsJ_15470 OSJNBa0073E02.6,MYB30 Os02g0624300 LOC_Os02g41510 B1215B07.15 OsJ_07582,Os04g0517100 OSNPB_040517100 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased tolerance to cold stress. {ECO:0000269|PubMed:28062835}. FUNCTION: Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.,FUNCTION: Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. MISCELLANEOUS: Arabidopsis plants overexpressing MYB4 show dwarf phenotype and increased tolerance to cold and freezing (PubMed:14675437). Barley plants overexpressing MYB4 show a slight retarded growth and increased tolerance to cold and freezing (PubMed:22246661). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:22246661}. ENOG411E2MR BHLH72 Q570R7 PIF7_ARATH Transcription factor PIF7 (Basic helix-loop-helix protein 72) (AtbHLH72) (bHLH 72) (Phytochrome-interacting factor 7) (Transcription factor EN 109) (bHLH transcription factor bHLH072) DISRUPTION PHENOTYPE: Plants are hypersensitive to red light, exhibiting shorter hypocotyls and larger cotyledons. {ECO:0000269|PubMed:18252845}. FUNCTION: Transcription factor acting negatively in the phytochrome B signaling pathway under prolonged red light. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. May regulate the expression of a subset of genes by binding to the G-box motif. {ECO:0000269|PubMed:15486100, ECO:0000269|PubMed:18252845}. 40826 Transcription factor PIF7 (Basic helix-loop-helix protein 72) (AtbHLH72) (bHLH 72) (Phytochrome-interacting factor 7) (Transcription factor EN 109) (bHLH transcription factor bHLH072) nuclear speck [GO:0016607]; double-stranded DNA binding [GO:0003690]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; de-etiolation [GO:0009704]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Barely detectable in dark-grown seedlings. Induced after 2 hours of light exposure. TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. locus:2163163; AT5G61270 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E2MS O82240 O82240_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (Expressed protein) (Uncharacterized protein At2g47710) (Uncharacterized protein At2g47710; F17A22.10) 17301 Adenine nucleotide alpha hydrolases-like superfamily protein (Expressed protein) (Uncharacterized protein At2g47710) (Uncharacterized protein At2g47710; F17A22.10) Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2043273; AT2G47710 Universal stress protein NA NA NA NA NA NA NA ENOG411E2MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin family Os09g0481650 protein Q69QR0 Q69QR0_ORYSJ P0463D04.28 Os09g0481650 OSNPB_090481650 ENOG411E2MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XH domain Os12g0572500 protein (XH domain containing protein, expressed) (cDNA clone:002-111-E08, full insert sequence) Q2QNA9 Q2QNA9_ORYSJ Os12g0572500 LOC_Os12g38440 Os12g0572500 OSNPB_120572500 ENOG411E2MV T8P19.20 Q9SMP6,Q9FGW7 Q9SMP6_ARATH,Q9FGW7_ARATH At3g48510 (AtIII18x5-like protein) (Uncharacterized protein At3g48510) (Uncharacterized protein T8P19.20),Emb|CAB62340.1 (Uncharacterized protein At5g63350) (von willebrand factor A domain protein) 32216,33215 At3g48510 (AtIII18x5-like protein) (Uncharacterized protein At3g48510) (Uncharacterized protein T8P19.20),Emb|CAB62340.1 (Uncharacterized protein At5g63350) (von willebrand factor A domain protein) locus:2114455;,locus:2158544; AT3G48510,AT5G63350 NA NA NA NA NA NA NA NA ENOG411E2MW Q9AST6 VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog FUNCTION: Involved in endosomal protein transport. {ECO:0000250}. 15025 Vacuolar protein sorting-associated protein 55 homolog endosome [GO:0005768]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; late endosome to vacuole transport via multivesicular body sorting pathway [GO:0032511]; negative regulation of protein localization to cell surface [GO:2000009]; protein transport [GO:0015031] locus:2033729; AT1G32410 Vacuolar protein sorting-associated protein 55 homolog Os02g0803400 protein (Vacuolar protein sorting 55 protein-like) (cDNA clone:002-140-E11, full insert sequence),Os02g0803400 protein (Fragment) Q69SJ2,A0A0P0VR02 Q69SJ2_ORYSJ,A0A0P0VR02_ORYSJ P0689B12.28-1 Os02g0803400 OsJ_08761 OSNPB_020803400,Os02g0803400 OSNPB_020803400 ENOG411E2MT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os07g0671400 protein Q0D3R1 Q0D3R1_ORYSJ Os07g0671400 Os07g0671400 OSNPB_070671400 ENOG411E2MZ FKBP13 Q9SCY2 FKB13_ARATH Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic (PPIase FKBP13) (EC 5.2.1.8) (FK506-binding protein 1) (FK506-binding protein 13) (AtFKBP13) (Immunophilin FKBP13) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Responsive of the major PPIase activity in the chloroplast thylakoid lumen. Regulates the accumulation of Rieske protein, an essential component of the photosynthetic electron transport chain. {ECO:0000269|PubMed:16765949, ECO:0000269|PubMed:17655280, ECO:0000269|PubMed:19717822}. MISCELLANEOUS: The interaction between FKBP and the Rieske protein probably occurs before they are imported into the thylakoid. 5.2.1.8; 5.2.1.8 22039 Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic (PPIase FKBP13) (EC 5.2.1.8) (FK506-binding protein 1) (FK506-binding protein 13) (AtFKBP13) (Immunophilin FKBP13) (Rotamase) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; thylakoid lumen [GO:0031977]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077] TISSUE SPECIFICITY: Expressed in stems, leaves and developing flower buds, but not in roots. locus:2171958; AT5G45680 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q653Z1 Q653Z1_ORYSJ Os06g0663800 OsJ_22270 OSJNBb0065C04.47 OSNPB_060663800 ENOG411E2MX Q8LCH9 TRL33_ARATH Thioredoxin-like 3-3 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 14414 Thioredoxin-like 3-3 cytoplasm [GO:0005737]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2102043; AT3G53220 Thioredoxin Thioredoxin-like 3-3 (Thioredoxin-like 1) Q7XSQ7 TRL33_ORYSJ Os04g0560200 LOC_Os04g47260 OsJ_15765 OSJNBa0084K11.5 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411E2MY LSH3,LSH4 O82268,Q9LW68 LSH3_ARATH,LSH4_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 (Protein ORGAN BOUNDARY 1),Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 (Protein ORGAN BOUNDARY 4) DISRUPTION PHENOTYPE: No phenotype, probably due to redundant function of paralogs. {ECO:0000269|PubMed:21245300}. FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). Required for the maintenance of the shoot apical meristem and for the formation of lateral organs. Promotes petal formation and growth, but may suppress organ differentiation in the boundary region. {ECO:0000250, ECO:0000269|PubMed:21245300}.,FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). May suppress organ differentiation in the boundary region. {ECO:0000250, ECO:0000269|PubMed:21435050}. 24123,21434 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 (Protein ORGAN BOUNDARY 1),Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 (Protein ORGAN BOUNDARY 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; maintenance of shoot apical meristem identity [GO:0010492]; mRNA transcription [GO:0009299]; organ boundary specification between lateral organs and the meristem [GO:0010199]; petal development [GO:0048441]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416]; specification of petal number [GO:0048834],nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] DEVELOPMENTAL STAGE: Accumulates at the boundaries between the apical meristems and lateral organs in embryos, seedlings, and mature plants, and at the root apical meristem and in distinct cell files surrounding this area. First observed in heart-stage embryos, in the cotyledon boundary region of the shoot apex, and in the quiescent center and columella initial cells at the root tip. In bending-cotyledon stage embryos, weakly expressed in the boundary cells between the shoot apical meristem (SAM) and the cotyledons. In seedlings, accumulates in cells between the SAM and the cotyledons. During the reproductive phase, restricted to the basal regions of the pedicels and floral organs. In the inflorescence shoot apex, expressed in the early flower primordia, but not in the SAM. Later present in the cryptic bract region, but not in the floral meristem. {ECO:0000269|PubMed:21245300, ECO:0000269|PubMed:21435050}.,DEVELOPMENTAL STAGE: Accumulates at the boundaries between the apical meristems and lateral organs in embryos, seedlings, and mature plants, and at the root apical meristem and in distinct cell files surrounding this area. First observed in the shoot apex of early-heart embryos. Within the apex of the late-heart stage embryo, the signal is detected in the peripheral region but not in the central region. At the bent-cotyledon stage, accumulates in boundary cells located between the shoot apical meristem (SAM) and the cotyledon primordia. In seedlings, weakly expressed in the basal cells of the leaf primordia. During the reproductive phase, present in boundary cells between the SAM and the flower primordia, and in boundary cells between the floral meristem and sepal primordia. In developing flowers, confined to regions that surround the floral organs at the base. {ECO:0000269|PubMed:21435050}. TISSUE SPECIFICITY: Expressed around apical meristems, at the boundaries of vegetative and reproductive organs. Induced by NAC054/CUC1 and NAC098/CUC2 in shoot organ boundary cells. {ECO:0000269|PubMed:21245300, ECO:0000269|PubMed:21435050}.,TISSUE SPECIFICITY: Induced by NAC054/CUC1 and NAC098/CUC2 in shoot organ boundary cells. {ECO:0000269|PubMed:21435050}. locus:2055897;,locus:2082170; AT2G31160,AT3G23290 Protein of unknown function (DUF640) Protein G1-like5 Q7XDD0 G1L5_ORYSJ G1L5 Os10g0478000 LOC_Os10g33780 OsJ_31895 OSJNBa0055P24.1 FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. ENOG411E2MB Q94JV0,B3H552 Q94JV0_ARATH,B3H552_ARATH At1g69210/F4N2_11 (Uncharacterized protein family UPF0090),Uncharacterized protein family UPF0090 34220,26047 At1g69210/F4N2_11 (Uncharacterized protein family UPF0090),Uncharacterized protein family UPF0090 ribosomal small subunit biogenesis [GO:0042274] locus:2033263; AT1G69210 Uncharacterised BCR YhbC family COG0779 Os07g0155200 protein (cDNA clone:006-204-A05, full insert sequence) (cDNA clone:006-309-B01, full insert sequence),Os01g0594650 protein Q69QN2,A0A0P0V4S8 Q69QN2_ORYSJ,A0A0P0V4S8_ORYSJ Os07g0155200 Os07g0155200 OsJ_23139 OSJNBa0024L18.10 OSNPB_070155200,Os01g0594650 OSNPB_010594650 ENOG411E2MC Q9LML3 Q9LML3_ARATH F10K1.8 protein (Ribosomal protein S18) (Uncharacterized protein At1g07210) 29620 F10K1.8 protein (Ribosomal protein S18) (Uncharacterized protein At1g07210) cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2007397; AT1G07210 Ribosomal protein S18 Os10g0500500 protein (Putative ribosomal protein) (Ribosomal protein S18 containing protein, expressed) Q8LNG5 Q8LNG5_ORYSJ Os10g0500500 LOC_Os10g35690 Os10g0500500 OSJNBa0078O01.7 OSNPB_100500500 ENOG411E2MF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os01g0736600 protein (RING zinc finger protein-like) (cDNA clone:001-107-A12, full insert sequence) (cDNA clone:J013033B12, full insert sequence),Os12g0135300 protein Q5JNE3,A0A0P0Y6W5 Q5JNE3_ORYSJ,A0A0P0Y6W5_ORYSJ Os01g0736600 Os01g0736600 OsJ_03375 OSJNBb0021A09.6 OSNPB_010736600,Os12g0135300 OSNPB_120135300 ENOG411E2MG Q0WNC2,A0A1P8ARM9,A0A1P8ARK6 Q0WNC2_ARATH,A0A1P8ARM9_ARATH,A0A1P8ARK6_ARATH Chitinase-like protein (Uncharacterized protein At1g08530),Chitinase-like protein 27015,25783,20280 Chitinase-like protein (Uncharacterized protein At1g08530),Chitinase-like protein chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plastid [GO:0009536],integral component of membrane [GO:0016021] locus:2025630; AT1G08530 NA Os12g0430900 protein,Os12g0429900 protein C7J9L6,A0A0P0Y9Q7 C7J9L6_ORYSJ,A0A0P0Y9Q7_ORYSJ Os12g0430900 Os12g0430900 OSNPB_120430900,Os12g0429900 OSNPB_120429900 ENOG411E2MD RSZ22,RSZ22A O81126,Q9SJA6 RSZ22_ARATH,RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22 (RS-containing zinc finger protein 22) (At-RSZ22) (At-RSZp22) (AtRSZ22),Serine/arginine-rich splicing factor RSZ22A (RS-containing zinc finger protein 22A) (At-RSZ22a) (At-RSZp22a) (AtRSZ22a) FUNCTION: Sequence-specific RNA-binding protein probably involved in pre-mRNA splicing. In vitro, can complement efficiently splicing-deficient mammalian SRSF7-depleted HeLa cell extract. {ECO:0000269|PubMed:10350090}.,FUNCTION: Probably involved in intron recognition and spliceosome assembly. R-ATH-72163;R-ATH-72165; 22458,21915 Serine/arginine-rich splicing factor RSZ22 (RS-containing zinc finger protein 22) (At-RSZ22) (At-RSZp22) (AtRSZ22),Serine/arginine-rich splicing factor RSZ22A (RS-containing zinc finger protein 22A) (At-RSZ22a) (At-RSZp22a) (AtRSZ22a) cytoplasm [GO:0005737]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380],cytosol [GO:0005829]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed in primary and lateral roots, stems, petioles, abaxial and adaxial epidermis cells, trichomes, unopened flowers, anther filaments, anthers, stigma, pollen, pollen tube, ovule funiculi, integuments, embryo sac and developing seeds. {ECO:0000269|PubMed:12176998, ECO:0000269|PubMed:20237019, ECO:0000269|PubMed:9761791}. locus:2124799;,locus:2046638; AT4G31580,AT2G24590 splicing factor Serine/arginine-rich splicing factor RSZ21A (RS-containing zinc finger protein 21A) (Os-RSZ21a) (Os-RSZp21a),Serine/arginine-rich splicing factor RSZ21 (RS-containing zinc finger protein 21) (Os-RSZ21) (Os-RSZp21) Q69KL9,Q6K4N0 RZ21A_ORYSJ,RSZ21_ORYSJ RSZ21A RSZP21A Os06g0187900 LOC_Os06g08840 OSJNBb0005A05.14-1 P0470C02.25-1,RSZP21 RSZP21B Os02g0789400 LOC_Os02g54770 OJ1046_F07.9 OsJ_08668 OSJNBa0054K20.35 FUNCTION: Involved in pre-mRNA splicing. {ECO:0000250}. ENOG411E2ME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain MutT/nudix-like (Os06g0255400 protein) Q656M7 Q656M7_ORYSJ Os06g0255400 OSNPB_060255400 P0592E11.19 ENOG411E2MJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os01g0773800 protein A0A0P0V8W1 A0A0P0V8W1_ORYSJ Os01g0773800 OSNPB_010773800 ENOG411E2MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histidine-containing phosphotransfer protein Histidine-containing phosphotransfer protein 2 (OsAHP2) (OsHP1) (OsHpt3) Q6VAK4 OHP2_ORYSJ AHP2 HP1 OHP2 Os09g0567400 LOC_Os09g39400 OJ1155_H10.30 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, small grain and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay (By similarity). Functions as positive regulator of the cytokinin signaling pathway. May play a regulatory role in salt and drought tolerance during plant development (PubMed:24578505). {ECO:0000250|UniProtKB:Q8L9T7, ECO:0000269|PubMed:24578505}. MISCELLANEOUS: Plant silencing simultaneously OHP1 and OHP2 exhibit phenotypes for a deficiency in cytokinin signaling, including dwarfism with reduced internode lengths, enhanced lateral root growth, early leaf senescence, and reduced tiller numbers and fertility. {ECO:0000269|PubMed:24578505}. ENOG411E2MN JAG Q6S591,A0A1P8AW66,A0A1P8AW85 JAG_ARATH,A0A1P8AW66_ARATH,A0A1P8AW85_ARATH Zinc finger protein JAGGED,C2H2 and C2HC zinc fingers superfamily protein DISRUPTION PHENOTYPE: Lateral organs with serrated margins. Irregular shape of floral organs. {ECO:0000269|PubMed:14973281, ECO:0000269|PubMed:14973282}. Strong enhancement of defects in leaf stamen and carpel development compared with jag single mutants.,Leaves have a serrated edge. Sepals and petals are narrower and shorter than wt. Mutant sepals develop jagged tissue at the tip. Anthers are reduced with an altered shape and produce less pollen than wt. Abnormal leaf, sepal, petal, and stamen morphology-D. Weigel-2004 FUNCTION: Controls the morphogenesis of lateral organs. Functions in lateral organ shape and is sufficient to induce proliferation and growth of lateral organ tissue. Is necessary and sufficient for bract formation, but its expression is excluded from the cryptic bract, which could be a cause of bractless flowers in Arabidopsis. Participates with FIL and YAB3 in regulating valve margin development. Functions with JGL to define stamen and carpel shape. Functions with AS1 and AS2 in the sepal and petal primordia to repress boundary-specifying genes for normal development of the organs. {ECO:0000269|PubMed:14973281, ECO:0000269|PubMed:14973282, ECO:0000269|PubMed:16192305, ECO:0000269|PubMed:16554365, ECO:0000269|PubMed:18156293}. MISCELLANEOUS: Plants overexpressing JAG form bract-like organs on the inflorescence. 28379,20656,21048 Zinc finger protein JAGGED,C2H2 and C2HC zinc fingers superfamily protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abaxial cell fate specification [GO:0010158]; anther development [GO:0048653]; carpel development [GO:0048440]; flower development [GO:0009908]; leaf morphogenesis [GO:0009965]; specification of carpel identity [GO:0010094]; specification of floral organ identity [GO:0010093]; specification of stamen identity [GO:0010097]; stamen development [GO:0048443] TISSUE SPECIFICITY: Expressed in the emerging leaf, sepal, petal, stamen and carpel primordia. Not expressed in the apical shoot meristem (SAM). {ECO:0000269|PubMed:14973281, ECO:0000269|PubMed:14973282}. locus:2201302; AT1G68480 zinc finger protein Zinc finger protein STAMENLESS 1 (OsJAG) (Zinc finger protein OPEN BEAK) Q9LG97 SL1_ORYSJ SL1 OBP Os01g0129200 LOC_Os01g03840 P0408F06.18 DISRUPTION PHENOTYPE: Male sterility. Increased number of inflorescence branches, modified floral organ identities, flowers with varied numbers of inner floral organs and amorphous tissues without floral organ identity in whorls 3 and 4. Malformation of leaf blades until the fourth-leaf stage. {ECO:0000269|PubMed:19207212, ECO:0000269|PubMed:19453444}. FUNCTION: Regulates floral organ identity and cell proliferation in the inner floral whorls. Probably specifies the identities of lodicule and stamen through positive regulation of MADS16 expression. May contribute to morphogenesis by suppressing OSH1 expression in the lateral organs. {ECO:0000269|PubMed:19207212, ECO:0000269|PubMed:19453444}. ENOG411E2MM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA germin-like protein Germin-like protein 9-3,Putative germin-like protein 9-2 Q652P9,Q652Q0 GL93_ORYSJ,GL92_ORYSJ Os09g0568700 LOC_Os09g39530 OJ1003_C09.14 OsJ_029209,Os09g0568600 LOC_Os09g39520 OJ1003_C09.12 OsJ_029208 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DXTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0442800 protein (Protein kinase domain containing protein, expressed) (cDNA, clone: J065119D23, full insert sequence) Q7XE14 Q7XE14_ORYSJ Os10g0442800 LOC_Os10g30600 OsJ_31679 OSNPB_100442800 ENOG411DXTE Q93ZH3 Q93ZH3_ARATH AT4g11790/T5C23_220 (Pleckstrin homology (PH) domain superfamily protein) 47420 AT4g11790/T5C23_220 (Pleckstrin homology (PH) domain superfamily protein) nuclear pore [GO:0005643]; Ran GTPase binding [GO:0008536]; protein import into nucleus [GO:0006606] locus:2139752; AT4G11790 RanBP1 domain Os03g0667700 protein (RanBP1 domain containing protein, expressed) (cDNA, clone: J043022O19, full insert sequence) Q10FH5 Q10FH5_ORYSJ Os03g0667700 LOC_Os03g46480 OsJ_12021 OSNPB_030667700 ENOG411DXTX Q6DBQ2,Q6NMJ6,A0A1P8BF13 Q6DBQ2_ARATH,Q6NMJ6_ARATH,A0A1P8BF13_ARATH At5g19070 (SNARE associated Golgi protein family) (Uncharacterized protein At5g19070),At1g03260 (SNARE associated Golgi protein family),SNARE associated Golgi protein family 30178,29549,25243 At5g19070 (SNARE associated Golgi protein family) (Uncharacterized protein At5g19070),At1g03260 (SNARE associated Golgi protein family),SNARE associated Golgi protein family integral component of membrane [GO:0016021],cytosol [GO:0005829]; integral component of membrane [GO:0016021] locus:2179654;,locus:2014530; AT5G19070,AT1G03260 TVP38 TMEM64 family membrane protein Integral membrane protein-like (Os07g0655900 protein),Os07g0655900 protein (Fragment) Q8H3D8,A0A0P0X9S1 Q8H3D8_ORYSJ,A0A0P0X9S1_ORYSJ P0018C07.124 Os07g0655900 OsJ_25411 OSNPB_070655900,Os07g0655900 OSNPB_070655900 ENOG411DXTZ PRP31 Q8RXN6,Q5XVG8,Q5XVG7,F4I5F1 PRP31_ARATH,Q5XVG8_ARATH,Q5XVG7_ARATH,F4I5F1_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog (Pre-mRNA-processing factor 31 homolog) (Protein EMBRYO DEFECTIVE 1220),NOSIC domain protein DISRUPTION PHENOTYPE: Developmental defects, semi-dwarf phenotype and reduced growth. {ECO:0000269|PubMed:25684655}. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Involved in pre-mRNA splicing. Required for the assembly of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome (By similarity). Functions in association with STA1 and ZOP1 in spliceosome dynamics and pre-mRNA splicing. Required for transcriptional regulation and pre-mRNA splicing of cold-responsive genes, such as LTI78/RD29A, KIN2/COR6.6 or COR15A, especially under cold stress. May play a role in stress response. Involved in transcriptional gene silencing of endogenous transposable elements, independently of the RNA-directed DNA methylation (RdDM) pathway. Seems not to participate in the small RNA biogenesis of the RdDM pathway (PubMed:25684655). {ECO:0000250|UniProtKB:Q8WWY3, ECO:0000269|PubMed:25684655}. R-ATH-72163; 52645,23507,19468,30447 U4/U6 small nuclear ribonucleoprotein Prp31 homolog (Pre-mRNA-processing factor 31 homolog) (Protein EMBRYO DEFECTIVE 1220),NOSIC domain protein Cajal body [GO:0015030]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; spliceosomal tri-snRNP complex [GO:0097526]; U4 snRNP [GO:0005687]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U4atac snRNP [GO:0005690]; RNA binding [GO:0003723]; cellular response to cold [GO:0070417]; methylation-dependent chromatin silencing [GO:0006346]; mRNA splicing, via spliceosome [GO:0000398]; response to cold [GO:0009409]; RNA splicing [GO:0008380]; seed germination [GO:0009845]; spliceosomal tri-snRNP complex assembly [GO:0000244],U4/U6 x U5 tri-snRNP complex [GO:0046540]; spliceosomal tri-snRNP complex assembly [GO:0000244],precatalytic spliceosome [GO:0071011]; spliceosomal tri-snRNP complex [GO:0097526]; U4 snRNP [GO:0005687]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U4atac snRNP [GO:0005690]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal tri-snRNP complex assembly [GO:0000244] locus:2195698;,locus:2016134; AT1G60170,AT1G70400 U4 U6 small nuclear ribonucleoprotein OSJNBb0012E24.3 protein (Os04g0555400 protein) (cDNA clone:J013052N06, full insert sequence) (cDNA clone:J023004O13, full insert sequence),Os07g0141600 protein (Putative U4/U6 snRNP-associated 61 kDa protein),Os02g0730100 protein (Fragment),Os02g0730200 protein Q7XU07,Q8H4L0,A0A0P0VPC8,A0A0P0VP35 Q7XU07_ORYSJ,Q8H4L0_ORYSJ,A0A0P0VPC8_ORYSJ,A0A0P0VP35_ORYSJ Os04g0555400 Os04g0555400 OSJNBb0012E24.3 OSNPB_040555400,OJ1351_C05.114 Os07g0141600 OsJ_23051 OSNPB_070141600,Os02g0730100 OSNPB_020730100,Os02g0730200 OSNPB_020730200 ENOG411DXTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor A-2b (Heat stress transcription factor 18) (OsHsf-18) (Heat stress transcription factor 5) (rHsf5),Heat stress transcription factor A-2e (Heat stress transcription factor 12) (OsHsf-12) Q6VBB2,Q6F388 HFA2B_ORYSJ,HFA2E_ORYSJ HSFA2B HS1 HSF18 HSF5 Os07g0178600 LOC_Os07g08140 OJ1361_E02.115 OsJ_022374,HSFA2E HSF12 Os03g0795900 LOC_Os03g58160 OsJ_012388 OSJNBb0021G19.9 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.,FUNCTION: Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}. ENOG411DXTS HIPP36 Q84J88 HIP36_ARATH Heavy metal-associated isoprenylated plant protein 36 (AtHIP36) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 38701 Heavy metal-associated isoprenylated plant protein 36 (AtHIP36) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2180265; AT5G27690 Heavy-metal-associated domain Os05g0150733 protein A0A0N7KK59 A0A0N7KK59_ORYSJ Os05g0150733 OSNPB_050150733 ENOG411E9B4 CPK14,CPK32 P93759,Q6NLQ6,A0A1I9LQD4,F4ILW9 CDPKE_ARATH,CDPKW_ARATH,A0A1I9LQD4_ARATH,F4ILW9_ARATH Calcium-dependent protein kinase 14 (EC 2.7.11.1),Calcium-dependent protein kinase 32 (EC 2.7.11.1),Calcium-dependent protein kinase 32,Calcium-dependent protein kinase 14 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Involved in maintaining Ca2+ homeostasis in pollen tube tips by regulating CNGC18 (PubMed:24121288). Functions as regulator of the calcium-mediated abscisic acid (ABA) signaling pathway (PubMed:16299177). Phosphorylates ABA-responsive transcription factor ABF4 in vitro (PubMed:16299177). {ECO:0000269|PubMed:16299177, ECO:0000269|PubMed:24121288}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 60054,60935,48085,60040 Calcium-dependent protein kinase 14 (EC 2.7.11.1),Calcium-dependent protein kinase 32 (EC 2.7.11.1),Calcium-dependent protein kinase 32,Calcium-dependent protein kinase 14 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein kinase C activity [GO:0004698]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in embryos and most of the vegetative tissues. {ECO:0000269|PubMed:16299177}. locus:2054386;,locus:2103498; AT2G41860,AT3G57530 ATP binding calcium ion binding calmodulin-dependent protein kinase kinase protein kinase protein serine threonine kinase NA NA NA NA NA NA NA ENOG411E9B5 Q84M94,A0A1P8AV85 FBK15_ARATH,A0A1P8AV85_ARATH F-box/kelch-repeat protein At1g26930,Galactose oxidase/kelch repeat superfamily protein 47195,41327 F-box/kelch-repeat protein At1g26930,Galactose oxidase/kelch repeat superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; peroxisome [GO:0005777]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2202765; AT1G26930 Kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411E9B6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9B1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3474) Os07g0416900 protein (Putative delta 12 oleic acid desaturase) (cDNA clone:J023060M02, full insert sequence),Os07g0416700 protein (Fragment) Q8GVJ4,A0A0P0X5H8 Q8GVJ4_ORYSJ,A0A0P0X5H8_ORYSJ Os07g0416900 Os07g0416900 OSJNBa0066B06.115 OSNPB_070416900,Os07g0416700 OSNPB_070416700 ENOG411E9BX FLR1 Q9LH52 FLOR1_ARATH Leucine-rich repeat protein FLOR 1 (Protein FLORAL TRANSITION AT THE MERISTEM 4) DISRUPTION PHENOTYPE: Delayed flowering. {ECO:0000269|PubMed:22319055}. FUNCTION: Promotes flowering transition in long days (LD). {ECO:0000269|PubMed:22319055}. MISCELLANEOUS: 'Flor' means flower in Spanish. {ECO:0000305|PubMed:11689012}. 35808 Leucine-rich repeat protein FLOR 1 (Protein FLORAL TRANSITION AT THE MERISTEM 4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; transcription factor binding [GO:0008134]; long-day photoperiodism, flowering [GO:0048574]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Induced in the early inflorescence meristem (PubMed:22319055). First present when floral induction occurs in inflorescence and floral meristems. Strongly expressed upon flower induction in inflorescence meristems along two lateral strips on the L3 of the flank meristem, where flower primordia are initiated. In the L3 of the central initiation zone, also present at lower levels. Accumulates at high levels in the L3 of stages 1-4 of flower meristems. In developing flowers, detected from stage 3. By stages 7 and 8, specifically observed in stamen and gynoecium primordia. In stamens, restricted to the anthers, probably to the endothecium, tapetum and the middle layer. In carpels, first uniformly expressed in carpel primordia, but later restricted to the placentae, the funiculus and to the inner and outer integuments (Ref.7, PubMed:22319055). {ECO:0000269|PubMed:22319055, ECO:0000269|Ref.7}. TISSUE SPECIFICITY: Confined to flowers and inflorescences (e.g. inflorescence meristems, floral meristems, stamens and carpels). {ECO:0000269|PubMed:11689012, ECO:0000269|PubMed:22319055, ECO:0000269|Ref.7}. locus:2082274; AT3G12145 Leucine-rich repeat protein FLR1 NA NA NA NA NA NA NA ENOG411E9BY F4JZT9 F4JZT9_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 81853 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950] locus:2182613; AT5G35380 Universal stress protein family NA NA NA NA NA NA NA ENOG411E9BZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavoprotein NA NA NA NA NA NA NA ENOG411E9BT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E9BU Q9FNB3 Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 66500 Putative BTB/POZ domain-containing protein At5g13600 membrane [GO:0016020]; protein ubiquitination [GO:0016567] locus:2173204; AT5G13600 phototropic-responsive NPH3 family protein NA NA NA NA NA NA NA ENOG411E9BV CRRSP20,CRRSP18,CRRSP14,CRRSP17,CRRSP16,CRRSP19 Q9LRL9,Q9LRM1,Q9LJW1,Q9LRM2,Q9LRM3,Q9LRM0,A0A1I9LNN4 CRR20_ARATH,CRR18_ARATH,CRR14_ARATH,CRR17_ARATH,CRR16_ARATH,CRR19_ARATH,A0A1I9LNN4_ARATH Putative cysteine-rich repeat secretory protein 20,Cysteine-rich repeat secretory protein 18,Putative cysteine-rich repeat secretory protein 14,Putative cysteine-rich repeat secretory protein 17,Putative cysteine-rich repeat secretory protein 16,Putative cysteine-rich repeat secretory protein 19,Cysteine-rich repeat secretory protein, putative (DUF26) 30278,31777,32633,30998,29110,31713,34482 Putative cysteine-rich repeat secretory protein 20,Cysteine-rich repeat secretory protein 18,Putative cysteine-rich repeat secretory protein 14,Putative cysteine-rich repeat secretory protein 17,Putative cysteine-rich repeat secretory protein 16,Putative cysteine-rich repeat secretory protein 19,Cysteine-rich repeat secretory protein, putative (DUF26) extracellular region [GO:0005576] locus:2095647;,locus:2095627; AT3G21933,AT3G21920,AT3G29050,AT3G21910,AT3G21900,AT3G21930 receptor-like protein kinase-related NA NA NA NA NA NA NA ENOG411E9BW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE associated Golgi protein NA NA NA NA NA NA NA ENOG411E9BP DOF5.8 Q9FGD6 DOF58_ARATH Dof zinc finger protein DOF5.8 (AtDOF5.8) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 24118 Dof zinc finger protein DOF5.8 (AtDOF5.8) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2158078; AT5G66940 zinc finger NA NA NA NA NA NA NA ENOG411E9BQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphorylated CTD interacting factor 1 WW domain NA NA NA NA NA NA NA ENOG411E9BR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9BM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411E9BN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411E9BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase Os06g0300000 protein (Putative b-keto acyl reductase) Q5ZA41 Q5ZA41_ORYSJ Os06g0300000 OSNPB_060300000 P0501G08.27 ENOG411E9BJ NEK3,NEK2 Q8RX66,Q9CAU7,A0A1P8BAP6 NEK3_ARATH,NEK2_ARATH,A0A1P8BAP6_ARATH Serine/threonine-protein kinase Nek3 (EC 2.7.11.1) (NimA-related protein kinase 3) (AtNek3),Serine/threonine-protein kinase Nek2 (EC 2.7.11.1) (NimA-related protein kinase 2) (AtNek2),NIMA-related kinase 3 FUNCTION: May be involved in plant development processes. 2.7.11.1 63754,68035,62149 Serine/threonine-protein kinase Nek3 (EC 2.7.11.1) (NimA-related protein kinase 3) (AtNek3),Serine/threonine-protein kinase Nek2 (EC 2.7.11.1) (NimA-related protein kinase 2) (AtNek2),NIMA-related kinase 3 ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2185314;,locus:2114885; AT5G28290,AT3G04810 Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411E9BK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9BA HDG8 Q9M9P4,A0A1I9LQ48 HDG8_ARATH,A0A1I9LQ48_ARATH Homeobox-leucine zipper protein HDG8 (HD-ZIP protein HDG8) (Homeodomain GLABRA 2-like protein 8) (Homeodomain transcription factor HDG8) (Protein HOMEODOMAIN GLABROUS 8),Homeodomain GLABROUS 8 No visible phenotype. FUNCTION: Probable transcription factor. {ECO:0000250}. 78426,61221 Homeobox-leucine zipper protein HDG8 (HD-ZIP protein HDG8) (Homeodomain GLABRA 2-like protein 8) (Homeodomain transcription factor HDG8) (Protein HOMEODOMAIN GLABROUS 8),Homeodomain GLABROUS 8 nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289] TISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}. locus:2097770; AT3G03260 hdg8 hdg8 (homeodomain glabrous 8) NA NA NA NA NA NA NA ENOG411DTHY LCV2 Q9C8C1,A0A1P8AQW2 LCV2_ARATH,A0A1P8AQW2_ARATH Protein LIKE COV 2,Like COV 2 29216,25873 Protein LIKE COV 2,Like COV 2 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; stem vascular tissue pattern formation [GO:0010222],integral component of membrane [GO:0016021] locus:2018640; AT1G43130 Protein of unknown function (DUF502) Os05g0437200 protein (cDNA clone:001-025-D06, full insert sequence) (cDNA clone:J033103I02, full insert sequence),Membrane protein COV-like (Os01g0867900 protein) (cDNA clone:006-304-D06, full insert sequence),Os01g0867900 protein (Fragment) Q5TKN3,Q8S1P4,A0A0P0VAZ8 Q5TKN3_ORYSJ,Q8S1P4_ORYSJ,A0A0P0VAZ8_ORYSJ Os05g0437200 OJ1058_F05.4 OsJ_18671 OSNPB_050437200,P0677H08.9-1 Os01g0867900 OsJ_04209 OSNPB_010867900,Os01g0867900 OSNPB_010867900 ENOG411DTHG APP1 A0A1P8B667,A0A1P8B665,F4JQH3 A0A1P8B667_ARATH,A0A1P8B665_ARATH,F4JQH3_ARATH Aminopeptidase P1 FUNCTION: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro (By similarity). Aminopeptidase that binds to the auxin transport inhibitor N-1-naphthylphthalamic acid (NPA). May play a negative role in the regulation of PIN auxin transport proteins (PubMed:11891249). {ECO:0000250|UniProtKB:Q9VJG0, ECO:0000269|PubMed:11891249}. 72875,71697,71993 Aminopeptidase P1 metal ion binding [GO:0046872]; metalloaminopeptidase activity [GO:0070006],cytosol [GO:0005829]; plasma membrane [GO:0005886]; aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloaminopeptidase activity [GO:0070006]; N-1-naphthylphthalamic acid binding [GO:0010013]; auxin polar transport [GO:0009926] locus:2115370; AT4G36760 xaa-Pro aminopeptidase Metallopeptidase family M24 containing protein, expressed (Os11g0540100 protein),Os06g0664100 protein (Fragment),Os11g0539800 protein (Fragment) Q0ISB4,Q0DAB3,Q0ISB6 Q0ISB4_ORYSJ,Q0DAB3_ORYSJ,Q0ISB6_ORYSJ Os11g0540100 LOC_Os11g33340 Os11g0540100 OSNPB_110540100,Os06g0664100 Os06g0664100 OSNPB_060664100,Os11g0539800 OSNPB_110539800 ENOG411DXKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1-aminocyclopropane-1-carboxylate oxidase Os01g0580500 protein (Fragment),Os08g0426200 protein,Os05g0424200 protein A0A0P0V4I5,A0A0P0XFU8,A0A0P0WMS9 A0A0P0V4I5_ORYSJ,A0A0P0XFU8_ORYSJ,A0A0P0WMS9_ORYSJ Os01g0580500 OSNPB_010580500,Os08g0426200 OSNPB_080426200,Os05g0424200 OSNPB_050424200 ENOG411DXKE DA (large in Chinese) 2 Q93YV5 Q93YV5_ARATH RING/U-box superfamily protein (Uncharacterized protein At1g78420) 45049 RING/U-box superfamily protein (Uncharacterized protein At1g78420) cytoplasm [GO:0005737] locus:2032110; AT1G78420 expressed protein Os02g0244100 protein,Os06g0154900 protein (Fragment),Os06g0154900 protein Q6ESV2,A0A0P0WT30,A0A0P0WT60 Q6ESV2_ORYSJ,A0A0P0WT30_ORYSJ,A0A0P0WT60_ORYSJ Os02g0244100 Os02g0244100 OSNPB_020244100 P0503B05.32,Os06g0154900 OSNPB_060154900 ENOG411DXT9 O04083 O04083_ARATH Alpha/beta-Hydrolases superfamily protein (At1g11090) (Lysophospholipase isolog; 25331-24357) (Putative lysophospholipase isolog) ARA:AT1G11090-MONOMER; 36561 Alpha/beta-Hydrolases superfamily protein (At1g11090) (Lysophospholipase isolog; 25331-24357) (Putative lysophospholipase isolog) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629] locus:2197369; AT1G11090 hydrolase alpha beta fold family protein Os07g0565700 protein (Putative lysophospholipase homolog) (cDNA clone:001-206-E06, full insert sequence),Os08g0108925 protein (Fragment),Os01g0717301 protein Q8H4S9,A0A0P0XB04,A0A0P0V7F5 Q8H4S9_ORYSJ,A0A0P0XB04_ORYSJ,A0A0P0V7F5_ORYSJ OJ1773_H01.113 Os07g0565700 OSNPB_070565700,Os08g0108925 OSNPB_080108925,Os01g0717301 OSNPB_010717301 ENOG411DXT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lysM domain-containing GPI-anchored protein LysM domain-containing GPI-anchored protein LYP4 (LysM domain-containing protein 4) (Os-LYP4),LysM domain-containing GPI-anchored protein LYP6 (LysM domain-containing protein 6) (Os-LYP6),Os02g0769200 protein (cDNA clone:002-115-G12, full insert sequence) Q67UE8,Q69T51,Q0DX82 LYP4_ORYSJ,LYP6_ORYSJ,Q0DX82_ORYSJ LYP4 Os09g0452200 LOC_Os09g27890 OJ1163_C07.33 OsJ_29593 P0488D02.10,LYP6 Os06g0208800 LOC_Os06g10660 P0664C05.26,Os02g0769200 Os02g0769200 OSNPB_020769200 FUNCTION: Functions in innate immunity. Functions as pattern recognition receptor (PRR), sensing bacterial peptidoglycan (PGN) and fungal chitin at the cell surface. Involved in resistance against the bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo) and the fungal pathogen Magnaporthe oryzae. Binds PGN and fungal chitin in vitro (PubMed:22872757). Involved in microbe-associated molecular patterns (MAMPs) perception and participates to the activation of defense genes against the bacterial pathogen Xanthomonas oryzae pv. oryzicola (Xoc) or the fungal pathogen Magnaporthe oryzae (PubMed:23299421). {ECO:0000269|PubMed:22872757, ECO:0000269|PubMed:23299421}. MISCELLANEOUS: Plants silencing LYP4 exhibit significant compromised defense responses and enhanced susceptibility toward the bacterial pathogen Xanthomonas oryzae and the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:22872757}.,MISCELLANEOUS: Plants silencing LYP6 exhibit significant compromised defense responses and enhanced susceptibility toward the bacterial pathogen Xanthomonas oryzae and the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:22872757}. ENOG411DXT6 ALF4 Q84VX3,A0A1P8BFR8,A0A1P8BFP3,A0A1P8BFN5,A0A1P8BFP1,F4JWD6 ALF4_ARATH,A0A1P8BFR8_ARATH,A0A1P8BFP3_ARATH,A0A1P8BFN5_ARATH,A0A1P8BFP1_ARATH,F4JWD6_ARATH Aberrant root formation protein 4,Aberrant root formation protein FUNCTION: Required for the initiation of lateral roots independent from auxin signaling. May function in maintaining the pericycle in the mitotically competent state needed for lateral root formation. {ECO:0000269|PubMed:14731255}. 69189,56457,58110,66064,47379,63318 Aberrant root formation protein 4,Aberrant root formation protein nucleus [GO:0005634]; ubiquitin-protein transferase inhibitor activity [GO:0055105]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Widely expressed. Expressed throughout the root tip, stele and lateral primordia. Also expressed in the shoots. {ECO:0000269|PubMed:14731255}. AT5G11030 aberrant root formation protein Os08g0290100 protein Q6Z2B4 Q6Z2B4_ORYSJ Os08g0290100 OJ1034_C08.29 OSNPB_080290100 P0467G09.3 ENOG411DXT1 FBA3 Q9ZU52 ALFP3_ARATH Fructose-bisphosphate aldolase 3, chloroplastic (AtFBA3) (EC 4.1.2.13) (Protein PIGMENT DEFECTIVE 345) Pigment defective embryo-D. Meinke-2011 FUNCTION: Plays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4. {ECO:0000305}. ARA:AT2G01140-MONOMER; 4.1.2.13 42327 Fructose-bisphosphate aldolase 3, chloroplastic (AtFBA3) (EC 4.1.2.13) (Protein PIGMENT DEFECTIVE 345) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; mitochondrion [GO:0005739]; plastid [GO:0009536]; plastoglobule [GO:0010287]; fructose-bisphosphate aldolase activity [GO:0004332]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in roots, and at low levels in rosettes leaves, cauline leaves, stems and flowers. {ECO:0000269|PubMed:22561114}. locus:2038726; AT2G01140 fructose-bisphosphate aldolase Fructose-bisphosphate aldolase, chloroplastic (EC 4.1.2.13) (Chloroplastic aldolase) (AldP),Fructose-bisphosphate aldolase (EC 4.1.2.13),Os12g0169600 protein (Fragment) Q40677,Q94JJ0,A0A0P0Y7D8 ALFP_ORYSJ,Q94JJ0_ORYSJ,A0A0P0Y7D8_ORYSJ ALDP Os11g0171300 LOC_Os11g07020 OsJ_33121,Os01g0118000 OSNPB_010118000 P0494A10.15,Os12g0169600 OSNPB_120169600 FUNCTION: Plays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}. ENOG411DXT2 DOF2.4 O80928 DOF24_ARATH Dof zinc finger protein DOF2.4 (AtDOF2.4) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 35331 Dof zinc finger protein DOF2.4 (AtDOF2.4) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2040746; AT2G37590 Zinc finger protein Os03g0821200 protein,Os07g0236700 protein (Fragment) Q0DM99,A0A0P0X462 Q0DM99_ORYSJ,A0A0P0X462_ORYSJ Os03g0821200 Os03g0821200 OSNPB_030821200,Os07g0236700 OSNPB_070236700 ENOG411DXT3 Q9FGH4 E139_ARATH Glucan endo-1,3-beta-glucosidase 9 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 9) ((1->3)-beta-glucanase 9) (Beta-1,3-endoglucanase 9) (Beta-1,3-glucanase 9) ARA:AT5G58480-MONOMER; 3.2.1.39 52370 Glucan endo-1,3-beta-glucosidase 9 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 9) ((1->3)-beta-glucanase 9) (Beta-1,3-endoglucanase 9) (Beta-1,3-glucanase 9) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; defense response [GO:0006952] locus:2171253; AT5G58480 glucan endo-1-3-beta-glucosidase Glycosyl hydrolases family 17 protein, expressed (Os03g0296500 protein) Q10MT1 Q10MT1_ORYSJ Os03g0296500 LOC_Os03g18520 OSNPB_030296500 ENOG411E4XN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os07g0679200 protein (cDNA clone:002-105-E10, full insert sequence) Q7XIV5 Q7XIV5_ORYSJ Os07g0679200 Os07g0679200 OJ1205_F02.5 OJ1409_C08.24 OSNPB_070679200 ENOG411EHQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVQF Q9LEQ9,Q9SGH3,A0A1I9LSF5,A0A1I9LSF6,F4J8S4 Q9LEQ9_ARATH,Q9SGH3_ARATH,A0A1I9LSF5_ARATH,A0A1I9LSF6_ARATH,F4J8S4_ARATH ARM repeat superfamily protein (Uncharacterized protein At5g14790) (Uncharacterized protein T9L3_90),ARM repeat superfamily protein (At3g01450) (T13O15.9 protein),ARM repeat superfamily protein 38009,36347,28266,30594,41340 ARM repeat superfamily protein (Uncharacterized protein At5g14790) (Uncharacterized protein T9L3_90),ARM repeat superfamily protein (At3g01450) (T13O15.9 protein),ARM repeat superfamily protein locus:2185505;,locus:2096667;,locus:2086919; AT5G14790,AT3G01450,AT3G18530 CLASP N terminal Os02g0305700 protein (cDNA clone:J013163I06, full insert sequence),Os08g0534900 protein (cDNA clone:001-039-D08, full insert sequence) (cDNA clone:006-202-G11, full insert sequence) Q6K2Z4,Q6YZF8 Q6K2Z4_ORYSJ,Q6YZF8_ORYSJ P0543C11.17-1 Os02g0305700 OSNPB_020305700,Os08g0534900 Os08g0534900 OsJ_06393 OSJNBa0033D24.7 OSNPB_080534900 P0702C09.22 ENOG411EHQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411EAE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL5 (Protein YELLOW STRIPE LIKE 5) (OsYSL5),Os04g0390600 protein (Fragment) Q7XRV1,A0A0P0W9E3 YSL5_ORYSJ,A0A0P0W9E3_ORYSJ YSL5 Os04g0390600 LOC_Os04g32060 OSJNBa0055C08.2,Os04g0390600 OSNPB_040390600 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411EHQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Mycoplasma protein of unknown function DUF285 NA NA NA NA NA NA NA ENOG411EKHX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FATC domain Os03g0738200 protein A0A0P0W2S9 A0A0P0W2S9_ORYSJ Os03g0738200 OSNPB_030738200 ENOG411EKHZ NUDT2 Q94B74,A0A1P8BEL5,A0A1P8BEH7 NUDT2_ARATH,A0A1P8BEL5_ARATH,A0A1P8BEH7_ARATH Nudix hydrolase 2 (AtNUDT2) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase homolog 2 FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear. {ECO:0000269|PubMed:15878881, ECO:0000269|PubMed:18798872}. MISCELLANEOUS: Overexpression of NUTD2 confers enhanced tolerance to oxidative stress. ARA:AT5G47650-MONOMER; 3.6.1.13; 3.6.1.-; 3.6.1.13; 3.6.1.22 31611,36796,36927 Nudix hydrolase 2 (AtNUDT2) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase homolog 2 ADP-ribose diphosphatase activity [GO:0047631]; metal ion binding [GO:0046872]; NAD binding [GO:0051287]; NAD+ diphosphatase activity [GO:0000210]; response to oxidative stress [GO:0006979],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:15878881}. locus:2168993; AT5G47650 NUDIX domain NA NA NA NA NA NA NA ENOG411EKHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Proteasome complex subunit Rpn13 ubiquitin receptor Os04g0439900 protein (cDNA clone:J013001A22, full insert sequence) Q0JD02 Q0JD02_ORYSJ Os04g0439900 Os04g0439900 OsJ_14912 OSNPB_040439900 ENOG411EKHU PRP39-2 A0A1P8BBD6,F4KHG8 A0A1P8BBD6_ARATH,F4KHG8_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 93179,118658 Tetratricopeptide repeat (TPR)-like superfamily protein commitment complex [GO:0000243]; U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; mRNA 5'-splice site recognition [GO:0000395] locus:2170453; AT5G46400 HAT Os08g0379000 protein Q7EYN1 Q7EYN1_ORYSJ Os08g0379000 OSJNBb0011E04.121 OSNPB_080379000 P0709D11.11 ENOG411EKHW SUVH4 Q8GZB6,A0A1P8BH29 SUVH4_ARATH,A0A1P8BH29_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (Protein KRYPTONITE) (Protein SET DOMAIN GROUP 33) (Suppressor of variegation 3-9 homolog protein 4) (Su(var)3-9 homolog protein 4),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein The kyp-2 mutant has defects in callus formation under laboratory conditions. Many fewer seeds form calluses compared to wild type seeds and the calluses that do form are delayed and smaller in size. kyp-2 mutants are defective in the process known as alternative lengthening of telomeres a telomerase-independent process. These mutants also show a loss of association between K9-dimethylated H3 histones and telomeric and centromeric DNA via ChIP assays.,Wild type morphology; lacks the cytosine methylation at sites of CpNpG trinucleotides (where N is A C G or T); low level of expression of two retrotransposon-related sequences (Athila and Ta3 sequences); suppresses the clark kent allele clk-3; lacks trichomes on stems and leaves.,Loss of cytosine methylation reactivation of endogenous transposons,Phenotype not described.,Decreasein amounts of H3K9me2 in chromocenters,No visible phenotype. Complete loss of cytosine methylation resulting in the reactivation of endogenous transposons-S. Jacobsen-2002 FUNCTION: Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. The silencing mechanism via DNA CpNpG methylation requires the targeting of chromomethylase CMT3 to methylated histones, probably through an interaction with an HP1-like adapter. By its function, KYP is directly required for the maintenance of the DNA CpNpG and asymmetric methylation. Involved in the silencing of transposable elements. {ECO:0000269|PubMed:11898023, ECO:0000269|PubMed:15457214, ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16277745, ECO:0000269|PubMed:16287862}. MISCELLANEOUS: Mutations in the KYP/SUVH4 gene decrease the level of histone H3-K9 dimethylated, trimethylated or dimethylated in association with H3-K14Ac by factors of 4,3 and 3, respectively. The level of monomethylated H3-K9 is unchanged. Such mutations lead to a drastic decrease of cytosine methylation at CpNpG sites, causing the reactivation of endogenous retrotransposons. The KRYPTONYTE methyltransferase name was given according to its involvement in SUPERMAN gene silencing. ARA:AT5G13960-MONOMER; R-ATH-3214841; 2.1.1.43 70056,54729 Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (Protein KRYPTONITE) (Protein SET DOMAIN GROUP 33) (Suppressor of variegation 3-9 homolog protein 4) (Su(var)3-9 homolog protein 4),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; double-stranded methylated DNA binding [GO:0010385]; histone binding [GO:0042393]; histone methyltransferase activity (H3-K9 specific) [GO:0046974]; methyl-CpG binding [GO:0008327]; methyl-CpNpG binding [GO:0010428]; methyl-CpNpN binding [GO:0010429]; zinc ion binding [GO:0008270]; histone H3-K9 methylation [GO:0051567]; histone methylation [GO:0016571]; maintenance of DNA methylation [GO:0010216]; peptidyl-lysine methylation [GO:0018022],chromosome [GO:0005694]; nucleus [GO:0005634]; histone binding [GO:0042393]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in leaves stems and flowers. {ECO:0000269|PubMed:11691919}. locus:2159133; AT5G13960 Pfam:YDG_SRA NA NA NA NA NA NA NA ENOG411EKHM RPL18 Q9SX68 RK18_ARATH 50S ribosomal protein L18, chloroplastic (CL18) Embryo defective; Preglobular / Globular-D. Meinke-2011 FUNCTION: Binds 5S rRNA, forms part of the central protuberance of the 50S subunit. {ECO:0000250}. 18726 50S ribosomal protein L18, chloroplastic (CL18) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2007690; AT1G48350 ribosomal protein l18 50S ribosomal protein L18, chloroplastic (CL18),Os03g0828100 protein Q8SAY0,A0A0P0W5G6 RK18_ORYSJ,A0A0P0W5G6_ORYSJ RPL18 Os03g0828100 LOC_Os03g61260 OsJ_13209 OSJNBa0010E04.3,Os03g0828100 OSNPB_030828100 FUNCTION: Binds 5S rRNA, forms part of the central protuberance of the 50S subunit. {ECO:0000250}. ENOG411EKHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family Os01g0256600 protein (cDNA clone:001-122-F11, full insert sequence) (cDNA clone:J033063M10, full insert sequence) Q1EHT9 Q1EHT9_ORYSJ Os01g0256600 OSNPB_010256600 P0711E10.41 ENOG411EKHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family Os03g0694800 protein (Putative ribosomal protein L18) (Ribosomal protein L18 family protein, putative, expressed) (cDNA clone:J023093M09, full insert sequence) Q851K7 Q851K7_ORYSJ Os03g0694800 LOC_Os03g48840 Os03g0694800 OsJ_12198 OSJNBb0021O11.5 OSNPB_030694800 ENOG411EKHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family NA NA NA NA NA NA NA ENOG411EKHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family NA NA NA NA NA NA NA ENOG411EKHK F14D17_90 Q9LXH3 Q9LXH3_ARATH At3g45020 (Ribosomal L18p/L5e family protein) (Uncharacterized protein At3g45020) (Uncharacterized protein F14D17_90) 14980 At3g45020 (Ribosomal L18p/L5e family protein) (Uncharacterized protein At3g45020) (Uncharacterized protein F14D17_90) ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2075934; AT3G45020 Conserved gene of Os09g0549700 protein B9G4W9 B9G4W9_ORYSJ Os09g0549700 OsJ_30243 OSNPB_090549700 ENOG411EKHA T8B10_110 Q9M214,A0A1I9LN21 Q9M214_ARATH,A0A1I9LN21_ARATH At3g60450 (Phosphoglycerate mutase family protein) (Uncharacterized protein T8B10_110),Phosphoglycerate mutase family protein 30863,34720 At3g60450 (Phosphoglycerate mutase family protein) (Uncharacterized protein T8B10_110),Phosphoglycerate mutase family protein cytosol [GO:0005829] locus:2103371; AT3G60450 CONTAINS InterPro DOMAIN s Phosphoglycerate mutase (InterPro IPR013078) PRIB5 (InterPro IPR012398) Os03g0101500 protein (Phosphoglycerate mutase family protein, expressed) (cDNA clone:002-188-D09, full insert sequence) Q10T49 Q10T49_ORYSJ LOC_Os03g01180 Os03g0101500 OsJ_09057 OSNPB_030101500 ENOG411EKH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PGAM NA NA NA NA NA NA NA ENOG411EKH4 GT-2,GTL1 Q39117,Q9C882,A0A1P8ATZ4,A0A1P8ATX4 TGT2_ARATH,GTL1_ARATH,A0A1P8ATZ4_ARATH,A0A1P8ATX4_ARATH Trihelix transcription factor GT-2 (Trihelix DNA-binding protein GT-2),Trihelix transcription factor GTL1 (GT2-LIKE protein 1) (AtGTL1) (Protein GT-2-LIKE1) (Trihelix DNA-binding protein GTL1),GT-2-like 1 DISRUPTION PHENOTYPE: Increased water deficit tolerance and higher integrated water use efficiency (WUE) by reducing daytime transpiration associated with a higher expression of SDD1. Increases trichome cell size with normal patterning and branching accompanied with an increase in the nuclear DNA content only in trichomes that have completed branching. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. increased trichome cell size and nuclear DNA content without affecting the number of trichome branches Large trichomes-K. Sugimoto-2009 FUNCTION: Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.,FUNCTION: Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. 65837,64612,65443,71327 Trihelix transcription factor GT-2 (Trihelix DNA-binding protein GT-2),Trihelix transcription factor GTL1 (GT2-LIKE protein 1) (AtGTL1) (Protein GT-2-LIKE1) (Trihelix DNA-binding protein GTL1),GT-2-like 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to water deprivation [GO:0042631]; negative regulation of cell growth [GO:0030308]; negative regulation of DNA endoreduplication [GO:0032876]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of cell size [GO:0008361]; regulation of stomatal complex development [GO:2000038]; regulation of stomatal complex patterning [GO:2000037]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Mostly expressed in siliques, and, to a lower extent, in growing root hairs, leaves, stems, and flowers. Present in abaxial epidermal cells, predominantly in guard cells, pavement cells, and meristemoids. {ECO:0000269|PubMed:21169508, ECO:0000269|PubMed:9501260}. locus:2036272;,locus:2196663; AT1G76890,AT1G33240 chromatin binding Os04g0541100 protein (Fragment) Q0JBC9 Q0JBC9_ORYSJ Os04g0541100 Os04g0541100 OSNPB_040541100 ENOG411EKH5 T12E18_80 Q9M2U8,A0A1I9LTW1 Q9M2U8_ARATH,A0A1I9LTW1_ARATH At3g54390 (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At3g54390) (Uncharacterized protein T12E18_80),Sequence-specific DNA binding transcription factor 33281,35224 At3g54390 (Sequence-specific DNA binding transcription factor) (Uncharacterized protein At3g54390) (Uncharacterized protein T12E18_80),Sequence-specific DNA binding transcription factor sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2096134; AT3G54390 Transcription factor NA NA NA NA NA NA NA ENOG411EKH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0602300 protein (Fragment) Q0JAF2 Q0JAF2_ORYSJ Os04g0602300 Os04g0602300 OSNPB_040602300 ENOG411E108 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like Os03g0800000 protein (Fragment),Nodulin family protein, putative, expressed (Os12g0484600 protein),Os12g0484600 protein,Os08g0298500 protein (Fragment) Q0DMP3,Q2QQT3,A0A0P0YA88,A0A0P0XE28 Q0DMP3_ORYSJ,Q2QQT3_ORYSJ,A0A0P0YA88_ORYSJ,A0A0P0XE28_ORYSJ Os03g0800000 Os03g0800000 OSNPB_030800000,Os12g0484600 LOC_Os12g29950 Os12g0484600 OSNPB_120484600,Os12g0484600 OSNPB_120484600,Os08g0298500 OSNPB_080298500 ENOG411E109 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TOPRIM NA NA NA NA NA NA NA ENOG411E106 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper bZIP transcription factor 23 (OsBZIP23) (ABRE-binding factor 2) (OsABF2) (Abscisic acid responsive elements-binding factor 1) (OsAREB1) Q6Z312 BZP23_ORYSJ BZIP23 ABF2 AREB1 Os02g0766700 LOC_Os02g52780 OJ1004_A11.20 P0539D10.39 DISRUPTION PHENOTYPE: Slight decrease in plant height and increased sensitivity to drought and salt stresses. {ECO:0000269|PubMed:18931143}. FUNCTION: Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269|PubMed:18931143, ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:27325665, ECO:0000269|PubMed:27424498}. ENOG411E107 AHA5,HA5 Q9SJB3,A0A1P8B2U9,A0A1P8B2V0,A0A1P8B2Y6 PMA5_ARATH,A0A1P8B2U9_ARATH,A0A1P8B2V0_ARATH,A0A1P8B2Y6_ARATH ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5),Plasma membrane ATPase (EC 3.6.3.6) FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses (By similarity). {ECO:0000250}. ARA:AT2G24520-MONOMER; 3.6.3.6 104739,102662,76507,109893 ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5),Plasma membrane ATPase (EC 3.6.3.6) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; metal ion binding [GO:0046872]; ATP biosynthetic process [GO:0006754],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; ATP biosynthetic process [GO:0006754] locus:2046623; AT2G24520 E1-E2 ATPase Plasma membrane ATPase (EC 3.6.3.6) (Proton pump),Os08g0241800 protein (Fragment),Os04g0656100 protein,Plasma membrane ATPase (EC 3.6.3.6) Q7XPY2,Q0J713,A0A0P0WFR6,A0A0P0WG33 PMA1_ORYSJ,Q0J713_ORYSJ,A0A0P0WFR6_ORYSJ,A0A0P0WG33_ORYSJ Os04g0656100 LOC_Os04g56160 OSJNBa0071I13.11,Os08g0241800 Os08g0241800 OSNPB_080241800,Os04g0656100 OSNPB_040656100 FUNCTION: The plasma membrane ATPase of plants and fungi is a hydrogen ion pump. The proton gradient it generates drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses (By similarity). {ECO:0000250}. ENOG411E104 F17A17.1 Q9S7D2,A0A1I9LLZ4 Q9S7D2_ARATH,A0A1I9LLZ4_ARATH Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I (Rubisco methyltransferase family protein),Rubisco methyltransferase family protein ARA:GQT-1361-MONOMER; 57614,42658 Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I (Rubisco methyltransferase family protein),Rubisco methyltransferase family protein chloroplast [GO:0009507]; [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity [GO:0030785]; protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026],methyltransferase activity [GO:0008168] locus:2077342; AT3G07670 ribulose-15 bisphosphate carboxylase oxygenase large subunit N-methyltransferase Os02g0725200 protein (Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase) (cDNA clone:J033133G01, full insert sequence),Os02g0725200 protein (Fragment) Q6Z5K4,A0A0P0VNW6 Q6Z5K4_ORYSJ,A0A0P0VNW6_ORYSJ Os02g0725200 Os02g0725200 OJ1124_G07.13 OsJ_08208 OSNPB_020725200 P0685G12.43,Os02g0725200 OSNPB_020725200 ENOG411E105 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E102 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E103 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain NA NA NA NA NA NA NA ENOG411E100 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter NA NA NA NA NA NA NA ENOG411E101 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain Os10g0414700 protein (Fragment) A0A0P0XUW3 A0A0P0XUW3_ORYSJ Os10g0414700 OSNPB_100414700 ENOG411E10Z MYB8,MYB6 Q9SDS8,Q38851 MYB8_ARATH,MYB6_ARATH Transcription factor MYB8 (Myb-related protein 8) (AtMYB8),Transcription repressor MYB6 (Myb-related protein 6) (AtMYB6) FUNCTION: Transcription activator. {ECO:0000250|UniProtKB:Q38850}. 24239,26474 Transcription factor MYB8 (Myb-related protein 8) (AtMYB8),Transcription repressor MYB6 (Myb-related protein 6) (AtMYB6) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. locus:1005716764;,locus:2133677; AT1G35515,AT4G09460 Myb-related protein Os04g0607175 protein,Myb transcription factor (Os05g0429900 protein) (Putative myb protein) (cDNA clone:001-023-G03, full insert sequence) (cDNA clone:J013083O13, full insert sequence) (cDNA clone:J023030O22, full insert sequence),Os01g0874300 protein (Putative myb-related protein) (Putative myb2) (cDNA clone:001-029-F12, full insert sequence),MybHv5, putative (Os12g0116500 protein),Os03g0244875 protein B9FCD6,Q5TKI8,Q8RUI9,Q2QYJ8,Q10P69 B9FCD6_ORYSJ,Q5TKI8_ORYSJ,Q8RUI9_ORYSJ,Q2QYJ8_ORYSJ,Q10P69_ORYSJ Os04g0607175 OsJ_16085 OSNPB_040607175,Os05g0429900 OSJNBb0048I21.9 OSNPB_050429900,P0648C09.6 Os01g0874300 OsJ_04260 OSNPB_010874300 P0491F11.40 P0698A10.4,Os12g0116500 LOC_Os12g02430 OsJ_35007 OSNPB_120116500,Os03g0244875 LOC_Os03g14100 OsJ_10114 OSNPB_030244875 ENOG411E10Y KIN10A Q8VWI7 KN10A_ARATH Kinesin-like protein KIN-10A (Phragmoplast-associated kinesin-related protein 2) (AtPAKRP2) FUNCTION: Probable plus end-directed motor protein that may contribute to the transport of Golgi-derived vesicles in the phragmoplast. {ECO:0000269|PubMed:11701879}. 97419 Kinesin-like protein KIN-10A (Phragmoplast-associated kinesin-related protein 2) (AtPAKRP2) cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; microtubule-based movement [GO:0007018]; vesicle transport along microtubule [GO:0047496] locus:2129630; AT4G14330 kinesin-like protein KIF11-like Kinesin-like protein KIN-10A Q6K990 KN10A_ORYSJ KIN10A Os02g0810200 LOC_Os02g56540 OJ1112_G06.36 OJ1116_E04.2 OsJ_08815 ENOG411E10V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI Os11g0677400 protein (Plant invertase/pectin methylesterase inhibitor family protein, expressed) (cDNA clone:J023020A19, full insert sequence) Q2QZQ3 Q2QZQ3_ORYSJ LOC_Os11g45220 Os11g0677400 OsJ_25334 OSNPB_110677400 ENOG411E10W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0564000 protein (cDNA clone:J023030P11, full insert sequence) Q7F2A9 Q7F2A9_ORYSJ OJ1112_E08.104 OJ1720_F04.117 Os07g0564000 OsJ_24752 OSNPB_070564000 ENOG411E10T FRS2 Q3EBQ3,A0A1P8B0K4,A0A1P8B0I3,A0A1P8B0H6 FRS2_ARATH,A0A1P8B0K4_ARATH,A0A1P8B0I3_ARATH,A0A1P8B0H6_ARATH Protein FAR1-RELATED SEQUENCE 2,FAR1-related sequence 2 FUNCTION: Putative transcription activator involved in regulating light control of development. 91968,87622,87347,86996 Protein FAR1-RELATED SEQUENCE 2,FAR1-related sequence 2 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585],zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2062606; AT2G32250 protein FAR1-RELATED SEQUENCE NA NA NA NA NA NA NA ENOG411E10R Q5XVA1 Q5XVA1_ARATH Uncharacterized protein 79621 Uncharacterized protein locus:2103570; AT3G56870 NA Expressed protein (Os03g0594700 protein) Q851G7 Q851G7_ORYSJ Os03g0594700 LOC_Os03g39740 Os03g0594700 OsJ_11619 OSJNBb0042N11.21 OSNPB_030594700 ENOG411E10S TUBB5,TUBB1 P29513,P12411 TBB5_ARATH,TBB1_ARATH Tubulin beta-5 chain (Beta-5-tubulin),Tubulin beta-1 chain (Beta-1-tubulin) FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. MISCELLANEOUS: There are nine genes coding for beta-tubulin. R-ATH-6798695; 50342,50217 Tubulin beta-5 chain (Beta-5-tubulin),Tubulin beta-1 chain (Beta-1-tubulin) cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; tubulin complex [GO:0045298]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017],microtubule [GO:0005874]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017]; response to light stimulus [GO:0009416]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Accumulates predominantly in roots. locus:2198661;,locus:2005724; AT1G20010,AT1G75780 Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain NA NA NA NA NA NA NA ENOG411E10P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family 3'-N-debenzoyltaxol N-benzoyltransferase-like (Os01g0179000 protein) Q9LGF6 Q9LGF6_ORYSJ Os01g0179000 OSNPB_010179000 P0406H10.14 P0509B06.16 ENOG411E10Q cemA P56783 CEMA_ARATH Chloroplast envelope membrane protein FUNCTION: May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake into chloroplasts. {ECO:0000255|HAMAP-Rule:MF_01308}. 27405 Chloroplast envelope membrane protein chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; proton transport [GO:0015992] locus:504954676; ATCG00530 May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake into chloroplasts NA NA NA NA NA NA NA ENOG411E10N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os05g0241200 protein (Putative phosphate translocator) (cDNA clone:006-204-D11, full insert sequence),Os05g0241200 protein (Fragment) Q60EU8,A0A0P0WJQ4 Q60EU8_ORYSJ,A0A0P0WJQ4_ORYSJ Os05g0241200 OJ1115_B04.11 OSNPB_050241200,Os05g0241200 OSNPB_050241200 ENOG411E10M CRK1 Q9LMB9 CRK1_ARATH Cysteine-rich receptor-like protein kinase 1 (Cysteine-rich RLK1) (EC 2.7.11.1) (Receptor-like kinase in flowers 2) 2.7.11.1 69176 Cysteine-rich receptor-like protein kinase 1 (Cysteine-rich RLK1) (EC 2.7.11.1) (Receptor-like kinase in flowers 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in the whole plant at low levels. {ECO:0000269|PubMed:9687063}. AT1G19090 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E10J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-galactosidase Beta-galactosidase 4 (Lactase 4) (EC 3.2.1.23),Os02g0219200 protein (Fragment) Q6Z6K4,A0A0P0VGH5,A0A0P0VGJ1,A0A0P0VGI6 BGAL4_ORYSJ,A0A0P0VGH5_ORYSJ,A0A0P0VGJ1_ORYSJ,A0A0P0VGI6_ORYSJ Os02g0219200 LOC_Os02g12730 P0027A02.24,Os02g0219200 OSNPB_020219200 ENOG411E10K CIPK21 Q94CG0,B3H639,Q6AWV4,F4KC10,A0A1P8BBI3,A0A1P8BBK1,A0A1P8BGM7,F4KC08 CIPKL_ARATH,B3H639_ARATH,Q6AWV4_ARATH,F4KC10_ARATH,A0A1P8BBI3_ARATH,A0A1P8BBK1_ARATH,A0A1P8BGM7_ARATH,F4KC08_ARATH CBL-interacting serine/threonine-protein kinase 21 (EC 2.7.11.1) (SNF1-related kinase 3.4) (SOS2-like protein kinase PKS23),Protein kinase superfamily protein,At5g57565 (Protein kinase superfamily protein),Non-specific serine/threonine protein kinase (EC 2.7.11.1) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 46344,14468,15978,20169,45226,36590,13308,15069 CBL-interacting serine/threonine-protein kinase 21 (EC 2.7.11.1) (SNF1-related kinase 3.4) (SOS2-like protein kinase PKS23),Protein kinase superfamily protein,At5g57565 (Protein kinase superfamily protein),Non-specific serine/threonine protein kinase (EC 2.7.11.1) cytosol [GO:0005829]; nucleus [GO:0005634]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cellular response to osmotic stress [GO:0071470]; cellular response to salt stress [GO:0071472]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transduction [GO:0007165] locus:2174587;,locus:1006230594; AT5G57630,AT5G57565 CBL-interacting serine threonine-protein kinase Non-specific serine/threonine protein kinase (EC 2.7.11.1) Q6ETM9 Q6ETM9_ORYSJ Os02g0178000 OSNPB_020178000 P0504A05.28 ENOG411E10H O64792,B3H5S3,A0A1P8AYM8 PIGP_ARATH,B3H5S3_ARATH,A0A1P8AYM8_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit P (EC 2.4.1.198),Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit FUNCTION: Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis. {ECO:0000250}. PATHWAY: Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis. ARA:AT1G61280-MONOMER;,ARA:AT2G39445-MONOMER; R-ATH-162710; 2.4.1.198 15611,20285,17572 Phosphatidylinositol N-acetylglucosaminyltransferase subunit P (EC 2.4.1.198),Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex [GO:0000506]; integral component of membrane [GO:0016021]; phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]; GPI anchor biosynthetic process [GO:0006506],integral component of membrane [GO:0016021]; phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]; GPI anchor biosynthetic process [GO:0006506] locus:2197755;,locus:4515102966; AT1G61280,AT2G39445 Phosphatidylinositol n-acetylglucosaminyltransferase subunit Expressed protein (Os10g0569100 protein) (cDNA clone:001-026-F01, full insert sequence),Os03g0640300 protein Q336Q3,A0A0N7KHP9 Q336Q3_ORYSJ,A0A0N7KHP9_ORYSJ LOC_Os10g41950 Os10g0569100 OSNPB_100569100,Os03g0640300 OSNPB_030640300 ENOG411E10I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain containing protein expressed Os06g0646400 protein (Putative ethylene-inducible CTR1-like protein kinase) (cDNA, clone: J100065P17, full insert sequence) Q67W58 Q67W58_ORYSJ Os06g0646400 OJ1226_A12.16 OSNPB_060646400 ENOG411E10F Q9FZE6,Q9LMG4,F4I0M4 Q9FZE6_ARATH,Q9LMG4_ARATH,F4I0M4_ARATH T-box transcription factor, putative (DUF863) (T1K7.1 protein),F16A14.15 (T-box transcription factor, putative (DUF863)),T-box transcription factor, putative (DUF863) 96505,112938,99179 T-box transcription factor, putative (DUF863) (T1K7.1 protein),F16A14.15 (T-box transcription factor, putative (DUF863)),T-box transcription factor, putative (DUF863) locus:2197880;,locus:2014769;,locus:2007131; AT1G26620,AT1G13940,AT1G69360 Plant protein of unknown function (DUF863) Os03g0758600 protein (Fragment) Q0DNE0 Q0DNE0_ORYSJ Os03g0758600 OSNPB_030758600 ENOG411E10G Q9FHB8 Q9FHB8_ARATH Transmembrane protein 26737 Transmembrane protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2156702; AT5G52420 NA Expressed protein (Os10g0548100 protein) (cDNA clone:002-125-D06, full insert sequence),Os11g0292200 protein Q94LU1,A0A0P0Y1H1 Q94LU1_ORYSJ,A0A0P0Y1H1_ORYSJ OSJNBa0082M15.6 LOC_Os10g40040 Os10g0548100 OSNPB_100548100,Os11g0292200 OSNPB_110292200 ENOG411E10D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Putrescine hydroxycinnamoyltransferase 1 (OsPHT1) (EC 2.3.1.-) (BAHD-like hydroxycinnamoyl transferase HCT3) (Hydroxycinnamoyltransferase 3) (OsHCT3) Q5SMM8 PHT1_ORYSJ PHT1 HCT3 Os06g0184900 LOC_Os06g08580 P0554A06.23 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to putrescine, to produce coumaroyl putrescine. {ECO:0000269|PubMed:27354554}. ENOG411E10E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0885300 protein (cDNA clone:J013091A07, full insert sequence) (cDNA clone:J033082G03, full insert sequence),Os01g0885300 protein (Fragment) Q0JH41,A0A0N7KE71 Q0JH41_ORYSJ,A0A0N7KE71_ORYSJ Os01g0885300 Os01g0885300 OSNPB_010885300,Os01g0885300 OSNPB_010885300 ENOG411E10B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) OSJNBa0053K19.20 protein (Os04g0624800 protein) (cDNA clone:J023056J16, full insert sequence) Q7XPQ3 Q7XPQ3_ORYSJ Os04g0624800 OSJNBa0053K19.20 OSNPB_040624800 ENOG411E10C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Bric-a-Brac Tramtrack Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB/POZ domain containing protein (Os10g0423300 protein),BTB/POZ domain containing protein (Os10g0423800 protein),Os02g0760600 protein (Speckle-type protein-like),BTB/POZ domain containing protein (Os10g0423900 protein),Os10g0425400 protein (Fragment),Os11g0630700 protein,Os10g0423400 protein,Os11g0630900 protein (Fragment) Q7XEG4,Q7XEG1,Q6K8D1,Q7XEG0,A0A0N7KRT6,A0A0P0Y4J8,A0A0P0XUU8,A0A0P0Y4S3 Q7XEG4_ORYSJ,Q7XEG1_ORYSJ,Q6K8D1_ORYSJ,Q7XEG0_ORYSJ,A0A0N7KRT6_ORYSJ,A0A0P0Y4J8_ORYSJ,A0A0P0XUU8_ORYSJ,A0A0P0Y4S3_ORYSJ Os10g0423300 LOC_Os10g28760 OsJ_31570 OSNPB_100423300,Os10g0423800 LOC_Os10g28810 OsJ_31575 OSNPB_100423800,Os02g0760600 Os02g0760600 OJ1175_B01.18 OsJ_08469 OSNPB_020760600,LOC_Os10g28820 Os10g0423900 OsJ_31576 OSNPB_100423900,Os10g0425400 OSNPB_100425400,Os11g0630700 OSNPB_110630700,Os10g0423400 OSNPB_100423400,Os11g0630900 OSNPB_110630900 ENOG411E10A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411E3QC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os01g0311100 protein A0A0P0V1P8 A0A0P0V1P8_ORYSJ Os01g0311100 OSNPB_010311100 ENOG411EAEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os01g0596700 protein (Ribosomal RNA apurinic site specific lyase-like) (cDNA clone:002-127-B04, full insert sequence) Q8LQV1 Q8LQV1_ORYSJ Os01g0596700 Os01g0596700 B1103C09.33 OSNPB_010596700 ENOG411E3QE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional activator that binds specifically to the DNA sequence 5'- AG CCGAC-3'. Binding to the C-repeat DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt cold and drought stress (By similarity) Dehydration-responsive element-binding protein 1B (Protein DREB1B),Os09g0522000 protein (Fragment) Q3T5N4,A0A0P0XQB4 DRE1B_ORYSJ,A0A0P0XQB4_ORYSJ DREB1B ERF31 Os09g0522000 LOC_Os09g35010,Os09g0522000 OSNPB_090522000 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}. ENOG411DZ3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os05g0370700 protein (Putative esterase) (cDNA clone:002-152-B10, full insert sequence),Os05g0370900 protein Q60EW8,A0A0P0WLG3 Q60EW8_ORYSJ,A0A0P0WLG3_ORYSJ Os05g0370700 OJ1118_F06.7 OSNPB_050370700,Os05g0370900 OSNPB_050370900 ENOG411DZ3W MUF9.15 Q9FKJ5 Q9FKJ5_ARATH At5g60520 (Late embryogenesis abundant (LEA) protein-like protein) (Similarity to root cap protein) 37834 At5g60520 (Late embryogenesis abundant (LEA) protein-like protein) (Similarity to root cap protein) locus:2175193; AT5G60520 Root cap NA NA NA NA NA NA NA ENOG411DZ3U MNF13.3 Q682R7,F4KHE3 Q682R7_ARATH,F4KHE3_ARATH DNA double-strand break repair protein (Uncharacterized protein At5g40520),DNA double-strand break repair protein 65604,79434 DNA double-strand break repair protein (Uncharacterized protein At5g40520),DNA double-strand break repair protein locus:2168748; AT5G40520 NA Os09g0103200 protein (cDNA clone:J013155H09, full insert sequence) Q0J3J8 Q0J3J8_ORYSJ Os09g0103200 Os09g0103200 OSNPB_090103200 ENOG411DZ3T Q9SL08,Q9AT60 Q9SL08_ARATH,Q9AT60_ARATH Expressed protein (TLD-domain containing nucleolar protein),TLD-domain containing nucleolar protein (Uncharacterized protein At2g05590) (Uncharacterized protein T20G20.6/At2g05590) 28958,33291 Expressed protein (TLD-domain containing nucleolar protein),TLD-domain containing nucleolar protein (Uncharacterized protein At2g05590) (Uncharacterized protein T20G20.6/At2g05590) locus:2058999; AT2G05590 TLD NA NA NA NA NA NA NA ENOG411DZ3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: exportin Os11g0518900 protein (Fragment),Os11g0516800 protein A0A0P0Y358,A0A0P0Y2X4,A0A0P0Y2S7 A0A0P0Y358_ORYSJ,A0A0P0Y2X4_ORYSJ,A0A0P0Y2S7_ORYSJ Os11g0518900 OSNPB_110518900,Os11g0516800 OSNPB_110516800 ENOG411DZ3Q F10D13.7 Q9C565 Q9C565_ARATH Sporulation protein (DUF155) (Uncharacterized protein F10D13.7) (Uncharacterized protein F23O10.4) 42344 Sporulation protein (DUF155) (Uncharacterized protein F10D13.7) (Uncharacterized protein F23O10.4) mitochondrion [GO:0005739]; regulation of cell division [GO:0051302]; regulation of DNA endoreduplication [GO:0032875]; regulation of root meristem growth [GO:0010082] locus:2007161; AT1G69380 Uncharacterised ACR YagE family COG1723 Os01g0764300 protein Q5JN20 Q5JN20_ORYSJ Os01g0764300 OsJ_03560 OSNPB_010764300 P0403C05.7 ENOG411DZ3P EMB2076 Q84J46 PP262_ARATH Pentatricopeptide repeat-containing protein At3g29290 (Protein EMBRYO DEFECTIVE 2076) Embryo defective; Transition-D. Meinke-2003 62060 Pentatricopeptide repeat-containing protein At3g29290 (Protein EMBRYO DEFECTIVE 2076) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2091286; AT3G29290 Pentatricopeptide repeat-containing protein Os03g0211600 protein (Fragment) Q0DU25 Q0DU25_ORYSJ Os03g0211600 OSNPB_030211600 ENOG411EB23 Q9LRP3 Y3174_ARATH Probable receptor-like protein kinase At3g17420 (EC 2.7.11.1) 2.7.11.1 52805 Probable receptor-like protein kinase At3g17420 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2093591; AT3G17420 STYKc NA NA NA NA NA NA NA ENOG411EB22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os01g0171100 protein A0A0P0UZ90 A0A0P0UZ90_ORYSJ Os01g0171100 OSNPB_010171100 ENOG411EB21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EB20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase GDSL-like Lipase/Acylhydrolase family protein, expressed (Os03g0365800 protein) (cDNA clone:001-119-D08, full insert sequence),Os03g0365475 protein,Os03g0365000 protein,Os03g0365900 protein (Fragment),Os03g0365850 protein Q10KY7,A0A0P0VYL8,A0A0P0VYL7,A0A0P0VYH5,A0A0P0VYI8 Q10KY7_ORYSJ,A0A0P0VYL8_ORYSJ,A0A0P0VYL7_ORYSJ,A0A0P0VYH5_ORYSJ,A0A0P0VYI8_ORYSJ Os03g0365800 LOC_Os03g25030 Os03g0365800 OSNPB_030365800,Os03g0365475 OSNPB_030365475,Os03g0365000 OSNPB_030365000,Os03g0365900 OSNPB_030365900,Os03g0365850 OSNPB_030365850 ENOG411EB27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic (Fragment) A0A0P0V4X0 A0A0P0V4X0_ORYSJ Os01g0600900 OSNPB_010600900 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411EB26 SEC1B Q9SZ77 SEC1B_ARATH Protein transport Sec1b (AtSec1b) FUNCTION: Involved in the vesicle trafficking. Binds syntaxins (By similarity). {ECO:0000250}. R-ATH-114608; 75418 Protein transport Sec1b (AtSec1b) plasma membrane [GO:0005886]; protein transport [GO:0015031]; vesicle docking involved in exocytosis [GO:0006904] locus:2118126; AT4G12120 Sec1 family NA NA NA NA NA NA NA ENOG411EB25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB24 PRN1 Q9LX49,Q9LX45 PRN1_ARATH,PRNL4_ARATH Pirin-1 (AtPirin1),Putative pirin-like protein At3g59260 DISRUPTION PHENOTYPE: Altered response to blue light (BL) and abscisic acid (ABA). {ECO:0000269|PubMed:17322342}. Delayed germination without stratification; Germination and early seedling growth sensitive to ABA-L. Kaufman-2003 FUNCTION: Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling. {ECO:0000269|PubMed:17322342}. R-ATH-8935690; 31603,29822 Pirin-1 (AtPirin1),Putative pirin-like protein At3g59260 nucleus [GO:0005634]; abscisic acid-activated signaling pathway [GO:0009738]; blue light signaling pathway [GO:0009785]; response to abscisic acid [GO:0009737],nucleus [GO:0005634] DEVELOPMENTAL STAGE: Present at similar levels in seedlings and mature plants. locus:2081187;,locus:2081267; AT3G59220,AT3G59260 Pirin C-terminal cupin domain NA NA NA NA NA NA NA ENOG411EB29 Q944H1,Q8VYZ1,A0A1P8ATG6,F4HPG4,B3H4M3 Q944H1_ARATH,Q8VYZ1_ARATH,A0A1P8ATG6_ARATH,F4HPG4_ARATH,B3H4M3_ARATH AT4g10470/F7L13_50 (At4g10470),Uncharacterized protein At1g33050,Uncharacterized protein 43112,75282,72256,69575,72601 AT4g10470/F7L13_50 (At4g10470),Uncharacterized protein At1g33050,Uncharacterized protein locus:2127676;,locus:2037930; AT4G10470,AT1G33050 NA NA NA NA NA NA NA NA ENOG411EB28 PME59,PME60 Q9FHN5,Q9FHN4 PME59_ARATH,PME60_ARATH Probable pectinesterase/pectinesterase inhibitor 59 [Includes: Pectinesterase inhibitor 59 (Pectin methylesterase inhibitor 59); Pectinesterase 59 (PE 59) (EC 3.1.1.11) (Pectin methylesterase 59) (AtPME59)],Probable pectinesterase/pectinesterase inhibitor 60 [Includes: Pectinesterase inhibitor 60 (Pectin methylesterase inhibitor 60); Pectinesterase 60 (PE 60) (EC 3.1.1.11) (Pectin methylesterase 60) (AtPME60)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G51490-MONOMER;,ARA:AT5G51500-MONOMER; 3.1.1.11 58868,59648 Probable pectinesterase/pectinesterase inhibitor 59 [Includes: Pectinesterase inhibitor 59 (Pectin methylesterase inhibitor 59); Pectinesterase 59 (PE 59) (EC 3.1.1.11) (Pectin methylesterase 59) (AtPME59)],Probable pectinesterase/pectinesterase inhibitor 60 [Includes: Pectinesterase inhibitor 60 (Pectin methylesterase inhibitor 60); Pectinesterase 60 (PE 60) (EC 3.1.1.11) (Pectin methylesterase 60) (AtPME60)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2153112;,locus:2153127; AT5G51490,AT5G51500 Pectinesterase NA NA NA NA NA NA NA ENOG411EB2S 5MMP Q9ZUJ5 5MMP_ARATH Metalloendoproteinase 5-MMP (At5-MMP) (EC 3.4.24.-) FUNCTION: Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). Active on Mca-KESAbuNLFVLKDpaR-NH(2) (QF75) and, to some extent, on McaPLGLDpaAR-NH(2) (QF24), myelin basic protein (MBP) and beta-casein (PubMed:24156403). {ECO:0000250|UniProtKB:O23507, ECO:0000269|PubMed:24156403}. R-ATH-1592389;R-ATH-6798695; 3.4.24.- 39760 Metalloendoproteinase 5-MMP (At5-MMP) (EC 3.4.24.-) anchored component of membrane [GO:0031225]; extracellular matrix [GO:0031012]; plasma membrane [GO:0005886]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Mostly expressed in leaves, roots and stems, and, to a lower extent, in flowers. {ECO:0000269|PubMed:10574937}. locus:2025891; AT1G59970 Matrixin NA NA NA NA NA NA NA ENOG411EB2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion channel regulatory protein UNC-93 NA NA NA NA NA NA NA ENOG411EB2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EB2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Acyltransferase NA NA NA NA NA NA NA ENOG411EB2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bestrophin RFP-TM chloride channel NA NA NA NA NA NA NA ENOG411EB2V DES1,CYSD2,CYSD1 F4K5T2,Q9SXS7,Q9S6Z7,A0A1P8BB98,F4K5T1 CGL_ARATH,CYSD2_ARATH,CYSD1_ARATH,A0A1P8BB98_ARATH,F4K5T1_ARATH Bifunctional cystathionine gamma-lyase/cysteine synthase (EC 2.5.1.47) (EC 4.4.1.1) (Beta-substituted Ala synthase 4;3) (ARAth-Bsas4;3) (L-cysteine desulfhydrase 1) (DES1) (O-acetylserine (thiol)-lyase) (OASTL) (Protein CS-LIKE),Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 (EC 2.5.1.47) (EC 4.4.1.9) (Beta-substituted Ala synthase 4;2) (ARAth-Bsas4;2) (Cysteine synthase D2) (AtcysD2) (O-acetylserine (thiol)-lyase 6),Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 (EC 2.5.1.47) (EC 4.4.1.9) (Beta-substituted Ala synthase 4;1) (ARAth-Bsas4;1) (Cysteine synthase D1) (AtcysD1) (O-acetylserine (thiol)-lyase 3),L-cysteine desulfhydrase 1,Cysteine synthase D2 DISRUPTION PHENOTYPE: No visible phenotype. Light early-flowering and premature leaf senescence phenotype. Increased total cysteine content and increased resistance to pathogens. {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:19955263, ECO:0000269|PubMed:21988475}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18024555}. Early leaf senescence; Elevated cysteine levels in leaves; Tolerant to oxidative stress-C. Gotor-2009 FUNCTION: Involved in maintaining Cys homeostasis through the desulfuration of L-cysteine. Modulates the generation of the signaling molecule sulfide in plant cytosol. Probably unable to interact with SAT and to form the decameric Cys synthase complex (CSC) and is therefore not an enzymatically true OASTL protein. {ECO:0000269|PubMed:18223034, ECO:0000269|PubMed:19955263, ECO:0000269|PubMed:23428891}.,FUNCTION: Acts as a cysteine synthase. The cysteine synthesis reaction is more efficient than the cyanoalanine synthase activity. {ECO:0000269|PubMed:18223034}. PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 2/2. ARA:AT5G28020-MONOMER;,ARA:AT3G04940-MONOMER; 2.5.1.47; 4.4.1.1,2.5.1.47; 4.4.1.9 34326,34318,34294,28061,25103 Bifunctional cystathionine gamma-lyase/cysteine synthase (EC 2.5.1.47) (EC 4.4.1.1) (Beta-substituted Ala synthase 4;3) (ARAth-Bsas4;3) (L-cysteine desulfhydrase 1) (DES1) (O-acetylserine (thiol)-lyase) (OASTL) (Protein CS-LIKE),Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 (EC 2.5.1.47) (EC 4.4.1.9) (Beta-substituted Ala synthase 4;2) (ARAth-Bsas4;2) (Cysteine synthase D2) (AtcysD2) (O-acetylserine (thiol)-lyase 6),Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 (EC 2.5.1.47) (EC 4.4.1.9) (Beta-substituted Ala synthase 4;1) (ARAth-Bsas4;1) (Cysteine synthase D1) (AtcysD1) (O-acetylserine (thiol)-lyase 3),L-cysteine desulfhydrase 1,Cysteine synthase D2 cytoplasm [GO:0005737]; cystathionine gamma-lyase activity [GO:0004123]; cysteine synthase activity [GO:0004124]; L-cysteine desulfhydrase activity [GO:0080146]; L-cystine L-cysteine-lyase (deaminating) [GO:0044540]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cysteine biosynthetic process from serine [GO:0006535]; cysteine homeostasis [GO:0080145],cytoplasm [GO:0005737]; cysteine synthase activity [GO:0004124]; L-3-cyanoalanine synthase activity [GO:0050017]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cysteine biosynthetic process from serine [GO:0006535],cytoplasm [GO:0005737]; cysteine synthase activity [GO:0004124]; L-3-cyanoalanine synthase activity [GO:0050017]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535],cysteine biosynthetic process from serine [GO:0006535] TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:10845460}.,TISSUE SPECIFICITY: Mainly expressed in flowers. {ECO:0000269|PubMed:10845460}. locus:2143754;,locus:2143814;,locus:2114804; AT5G28030,AT5G28020,AT3G04940 cysteine synthase NA NA NA NA NA NA NA ENOG411EB2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EB2T CXE5 Q9FX94 CXE5_ARATH Probable carboxylesterase 5 (AtCXE5) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT1G49660-MONOMER; 3.1.1.1 35197 Probable carboxylesterase 5 (AtCXE5) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2012227; AT1G49660 AtCXE5 AtCXE5 (Arabidopsis thaliana carboxyesterase 5) NA NA NA NA NA NA NA ENOG411EB2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif NA NA NA NA NA NA NA ENOG411EB2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET domain NA NA NA NA NA NA NA ENOG411EB2C MZA15.20 Q9FIP7 Q9FIP7_ARATH At5g46780 (VQ motif-containing protein) 26110 At5g46780 (VQ motif-containing protein) locus:2178575; AT5G46780 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411EB2B T8P19.230 Q9SMM7 Q9SMM7_ARATH HXXXD-type acyl-transferase family protein (Uncharacterized protein At3g48720) (Uncharacterized protein T8P19.230) ARA:AT3G48720-MONOMER; 48004 HXXXD-type acyl-transferase family protein (Uncharacterized protein At3g48720) (Uncharacterized protein T8P19.230) cytosol [GO:0005829]; hydroxycinnamoyltransferase activity [GO:0050734]; cutin biosynthetic process [GO:0010143]; ferulate metabolic process [GO:0033494] locus:2114510; AT3G48720 Transferase family NA NA NA NA NA NA NA ENOG411EB2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os02g0654300 protein (cDNA clone:J033074L09, full insert sequence) Q0DZ14 Q0DZ14_ORYSJ Os02g0654300 Os02g0654300 OSNPB_020654300 ENOG411EB2G A0A1P8BDM1,F4JZM1 A0A1P8BDM1_ARATH,F4JZM1_ARATH Eukaryotic aspartyl protease family protein 47578,43362 Eukaryotic aspartyl protease family protein aspartic-type endopeptidase activity [GO:0004190],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2182182; AT5G19110 Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EB2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family Os01g0237366 protein,Os01g0237500 protein (Fragment),Os01g0237300 protein,Os01g0237750 protein B9EUK8,Q0JP80,A0A0P0V042,A0A0P0V0B4 B9EUK8_ORYSJ,Q0JP80_ORYSJ,A0A0P0V042_ORYSJ,A0A0P0V0B4_ORYSJ Os01g0237366 OsJ_01036 OSNPB_010237366,Os01g0237500 Os01g0237500 OSNPB_010237500,Os01g0237300 OSNPB_010237300,Os01g0237750 OSNPB_010237750 ENOG411EB2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SGS domain Os01g0512800 protein A0A0N7KD20 A0A0N7KD20_ORYSJ Os01g0512800 OSNPB_010512800 ENOG411EB2D SnRK1.3 Q9FLZ3 Q9FLZ3_ARATH Non-specific serine/threonine protein kinase (EC 2.7.11.1) R-ATH-163680;R-ATH-200425;R-ATH-380972; 2.7.11.1 56696 Non-specific serine/threonine protein kinase (EC 2.7.11.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2175663; AT5G39440 Kinase associated domain 1 NA NA NA NA NA NA NA ENOG411EB2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein expressed Os12g0553600 protein (Os12g0553701 protein),NB-ARC domain containing protein, expressed (Os12g0553200 protein),NB-ARC domain containing protein, expressed (Os12g0516300 protein),NB-ARC domain containing protein, expressed (Os12g0552900 protein),Os12g0516300 protein A3CHW2,Q2QNU4,Q2QPV5,Q2QNU7,A0A0N7KU43 A3CHW2_ORYSJ,Q2QNU4_ORYSJ,Q2QPV5_ORYSJ,Q2QNU7_ORYSJ,A0A0N7KU43_ORYSJ Os12g0553600 Os12g0553701 OsJ_36290 OSNPB_120553600,LOC_Os12g36720 Os12g0553200 OSNPB_120553200,LOC_Os12g33160 Os12g0516300 OSNPB_120516300,Os12g0552900 LOC_Os12g36690 Os12g0552900 OSNPB_120552900,Os12g0516300 OSNPB_120516300 ENOG411EB2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EB2I ASE3 Q9T0J5 ASE3_ARATH Amidophosphoribosyltransferase 3, chloroplastic (AtATase3) (PRPP3) (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase 3) (AtGPRAT3) FUNCTION: Catalyzes the first committed step of 'de novo' purine biosynthesis from glutamine. {ECO:0000269|PubMed:17616508}. PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2. ARA:AT4G38880-MONOMER; R-ATH-73817; 2.4.2.14; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Alanine, aspartate and glutamate metabolism (00250),Metabolic pathways (01100) 2.4.2.14 58041 Amidophosphoribosyltransferase 3, chloroplastic (AtATase3) (PRPP3) (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase 3) (AtGPRAT3) chloroplast stroma [GO:0009570]; amidophosphoribosyltransferase activity [GO:0004044]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; 'de novo' IMP biosynthetic process [GO:0006189]; glutamine metabolic process [GO:0006541]; nucleoside metabolic process [GO:0009116]; purine nucleobase biosynthetic process [GO:0009113] TISSUE SPECIFICITY: Mostly expressed at low levels in leaves, and, to a lower extent, in cotyledons. {ECO:0000269|PubMed:15266056}. locus:2141811; AT4G38880 glutamine phosphoribosylpyrophosphate amidotransferase NA NA NA NA NA NA NA ENOG411EB2H P93821,A0A1P8ASV9 ACCH7_ARATH,A0A1P8ASV9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 7 (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT1G04380-MONOMER; 1.14.-.- 38618,30166 1-aminocyclopropane-1-carboxylate oxidase homolog 7 (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2018274; AT1G04380 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EB2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZ39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DZ38 MIK22.14,MIK22.12 Q9FFL9,Q9FFM1,F4JBR5,A0A1I9LQJ5 Q9FFL9_ARATH,Q9FFM1_ARATH,F4JBR5_ARATH,A0A1I9LQJ5_ARATH Ankyrin repeat family protein,Ankyrin repeat family protein (Emb|CAB70981.1),LOW protein: ankyrin repeat protein (Fragment),LOW protein: ankyrin repeat protein 31585,39461,28568,26665 Ankyrin repeat family protein,Ankyrin repeat family protein (Emb|CAB70981.1),LOW protein: ankyrin repeat protein (Fragment),LOW protein: ankyrin repeat protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; signal transduction [GO:0007165],integral component of membrane [GO:0016021] locus:2165194;,locus:2165174; AT5G35830,AT5G35810,AT3G54070 Ankyrin repeat-containing protein NA NA NA NA NA NA NA ENOG411DZ37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L-type lectin-domain containing receptor kinase IX.1-like NA NA NA NA NA NA NA ENOG411DZ36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caffeoyl-coa o-methyltransferase Caffeoyl-CoA O-methyltransferase (Os08g0498600 protein) (cDNA clone:002-115-A04, full insert sequence) Q6DUC9 Q6DUC9_ORYSJ COA26 Os08g0498600 OSNPB_080498600 ENOG411DX05 Q8RX69,A0A1P8ARL4 Q8RX69_ARATH,A0A1P8ARL4_ARATH Alpha/beta hydrolase family protein (At1g15070/F9L1_1) (Uncharacterized protein At1g15070),Alpha/beta hydrolase family protein 63675,51730 Alpha/beta hydrolase family protein (At1g15070/F9L1_1) (Uncharacterized protein At1g15070),Alpha/beta hydrolase family protein chloroplast [GO:0009507]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2196179; AT1G15060 NA Os01g0692600 protein Q0JK71 Q0JK71_ORYSJ Os01g0692600 Os01g0692600 OSNPB_010692600 ENOG411DU7D TRS130,CLUB F4K0C4,A0A1P8BDG9,A0A1P8BDI8 TR130_ARATH,A0A1P8BDG9_ARATH,A0A1P8BDI8_ARATH Trafficking protein particle complex II-specific subunit 130 homolog (AtTRS130) (TRAPP II-specific subunit 130 homolog),CLUB DISRUPTION PHENOTYPE: Cytokinesis-defective and seedling-lethal phenotype. {ECO:0000269|PubMed:20609115, ECO:0000269|PubMed:21689172}. Amorphous club-like seedlings. Reduced growth of root and shoot apices. Defects in cell plate assembly during cytokinesis. Seedling lethal; Seedlings are amorphous and club-like-F. Assaad-2010 FUNCTION: Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells (PubMed:20609115, PubMed:21689172). Required for the polarized and selective transport of PIN2, but not PIN1, to the plasma membrane. Not required for ER-to-Golgi as well as biosynthetic and endocytic vacuolar transport (PubMed:21689172). {ECO:0000269|PubMed:20609115, ECO:0000269|PubMed:21689172}. 140681,140288,120488 Trafficking protein particle complex II-specific subunit 130 homolog (AtTRS130) (TRAPP II-specific subunit 130 homolog),CLUB cytosol [GO:0005829]; early endosome [GO:0005769]; trans-Golgi network [GO:0005802]; TRAPPII protein complex [GO:1990071]; cell plate assembly [GO:0000919]; cytokinesis by cell plate formation [GO:0000911]; early endosome to Golgi transport [GO:0034498]; intra-Golgi vesicle-mediated transport [GO:0006891] locus:2147324; AT5G54440 Pfam:DUF3758 Trafficking protein particle complex II-specific subunit 130 homolog (TRAPP II-specific subunit 130 homolog),Os12g0554400 protein (Fragment) Q2QNU0,A0A0P0YB93 TR130_ORYSJ,A0A0P0YB93_ORYSJ TRS130 Os12g0554400 LOC_Os12g36760,Os12g0554400 OSNPB_120554400 FUNCTION: Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells. {ECO:0000250|UniProtKB:F4K0C4}. ENOG411EMD7 MLN1.9 Q9FFH2 Q9FFH2_ARATH At5g44170 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g44170) R-ATH-8876725; 26120 At5g44170 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At5g44170) methyltransferase activity [GO:0008168] locus:2167618; AT5G44170 Putative methyltransferase NA NA NA NA NA NA NA ENOG411EMD0 Q9LTX1,A0A1I9LMT6,F4J9U9 Q9LTX1_ARATH,A0A1I9LMT6_ARATH,F4J9U9_ARATH RNA binding (RRM/RBD/RNP motifs) family protein 73082,69581,70099 RNA binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723]; mRNA processing [GO:0006397] locus:2087685; AT3G12640 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411EMDU Q8GZ31 Q8GZ31_ARATH At5g27920 (F-box family protein) (Uncharacterized protein At5g27920/F14I23_80) 70573 At5g27920 (F-box family protein) (Uncharacterized protein At5g27920/F14I23_80) locus:2143320; AT5G27920 F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411EMDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1771) NA NA NA NA NA NA NA ENOG411E4S1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411EMDH MQM1.22 Q9LT11 Q9LT11_ARATH Smr (Small MutS Related) domain-containing protein (Uncharacterized protein At5g23520) 49117 Smr (Small MutS Related) domain-containing protein (Uncharacterized protein At5g23520) cytoplasm [GO:0005737] locus:2171676; AT5G23520 Domain of unknown function (DUF1771) NA NA NA NA NA NA NA ENOG411EMDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1771 NA NA NA NA NA NA NA ENOG411EMDB Q9FGZ0 Q9FGZ0_ARATH Putative methyltransferase family protein 30493 Putative methyltransferase family protein methyltransferase activity [GO:0008168] locus:2157859; AT5G49560 Putative methyltransferase Os07g0569500 protein (cDNA clone:002-102-D10, full insert sequence) Q7XIH8 Q7XIH8_ORYSJ Os07g0569500 OJ1019_E02.18 OSNPB_070569500 ENOG411E1UE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endomembrane protein 70 Transmembrane 9 superfamily member Q6Z2D0,Q6Z2C9 Q6Z2D0_ORYSJ,Q6Z2C9_ORYSJ B1114E07.16-2 Os08g0288400 OJ1034_C08.4-2 OSNPB_080288400,Os08g0288400 B1114E07.16-1 OJ1034_C08.4-1 OSNPB_080288400 ENOG411E1UI Q84JE0,F4JBQ4,F4JBQ5 Q84JE0_ARATH,F4JBQ4_ARATH,F4JBQ5_ARATH TIP41-like protein (Uncharacterized protein At3g54000),TIP41-like protein 39184,33674,35286 TIP41-like protein (Uncharacterized protein At3g54000),TIP41-like protein locus:2084415; AT3G54000 Inherit from euNOG: expressed protein Os01g0850000 protein (cDNA clone:001-205-C02, full insert sequence) Q5N9T4 Q5N9T4_ORYSJ Os01g0850000 OsJ_04086 OSNPB_010850000 P0414E03.11 ENOG411E1UJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules stamens and carpels or whorls 2 3 and 4) and the lemma and palea (whorl 1) which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8 MADS-box transcription factor 1 (OsMADS1) (Protein LEAFY HULL STERILE 1) (Protein SEPALLATA-like) Q10PZ9 MADS1_ORYSJ MADS1 LHS1 Os03g0215400 LOC_Os03g11614 OsJ_09913 DISRUPTION PHENOTYPE: Homeotic transformation of lodicules, stamens and carpels into lemma- and palea-like structures. {ECO:0000269|PubMed:10852934}. FUNCTION: Probable transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules, stamens and carpels, or whorls 2, 3 and 4) and the lemma and palea (whorl 1), which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8. {ECO:0000269|PubMed:10852934, ECO:0000269|PubMed:11466523, ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:7948920, ECO:0000269|Ref.11}. ENOG411E1UM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gal-bind_lectin Hexosyltransferase (EC 2.4.1.-) (Fragment) Q0DML3 Q0DML3_ORYSJ Os03g0803600 Os03g0803600 OSNPB_030803600 ENOG411E1UN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os06g0644466 protein,Os06g0644300 protein A0A0P0WZR7,A0A0P0WZD4 A0A0P0WZR7_ORYSJ,A0A0P0WZD4_ORYSJ Os06g0644466 OSNPB_060644466,Os06g0644300 OSNPB_060644300 ENOG411E1UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAF NA NA NA NA NA NA NA ENOG411E3F0 A0A1P8AWI9,F4I8D6 A0A1P8AWI9_ARATH,F4I8D6_ARATH Chaperone DnaJ-domain superfamily protein 19325,19618 Chaperone DnaJ-domain superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2013940; AT1G71000 Heat Shock Protein Heat shock-like protein (Os01g0606900 protein) (cDNA clone:J013037L21, full insert sequence) Q5ZBN6 Q5ZBN6_ORYSJ Os01g0606900 Os01g0606900 OsJ_02543 OSJNBa0090K04.10 OSNPB_010606900 P0704D04.18 ENOG411E1UT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease NA NA NA NA NA NA NA ENOG411E1UW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E1UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA major facilitator superfamily antiporter Os11g0135300 protein (Fragment),Os12g0133000 protein A0A0P0XYI3,A0A0P0Y6M3 A0A0P0XYI3_ORYSJ,A0A0P0Y6M3_ORYSJ Os11g0135300 OSNPB_110135300,Os12g0133000 OSNPB_120133000 ENOG411E1UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARF Os06g0114200 protein (Putative ADP-ribosylation factor) Q9LWT5 Q9LWT5_ORYSJ Os06g0114200 OsJ_19885 OSNPB_060114200 P0541H01.22 ENOG411E1U0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein LAZY 1,Os11g0490600 protein (Fragment) Q2R435,A0A0P0Y2P7 LAZY1_ORYSJ,A0A0P0Y2P7_ORYSJ LA1 LA Os11g0490600 LOC_Os11g29840,Os11g0490600 OSNPB_110490600 DISRUPTION PHENOTYPE: Tiller-spreading phenotype due to defective shoot and tiller gravitropism. Extremely larger leaf angle at reproductive stage. Altered endogenous auxin distribution in shoots. {ECO:0000269|PubMed:17412736, ECO:0000269|PubMed:17468779, ECO:0000269|PubMed:25028496}. FUNCTION: Involved in the regulation of shoot gravitropism and tiller angle through negative regulation of basipetal polar auxin transport (PAT) (PubMed:17468779, PubMed:17412736, PubMed:25028496). Acts as positive regulator of lateral auxin transport (PubMed:17468779, PubMed:25028496). {ECO:0000269|PubMed:17412736, ECO:0000269|PubMed:17468779, ECO:0000269|PubMed:25028496}. ENOG411E1U3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os12g0577700 protein,Os08g0469800 protein A0A0P0YBP9,A0A0P0XGX8 A0A0P0YBP9_ORYSJ,A0A0P0XGX8_ORYSJ Os12g0577700 OSNPB_120577700,Os08g0469800 OSNPB_080469800 ENOG411E1U4 Q9C5C1 Q9C5C1_ARATH Uncharacterized protein At4g31330 27280 Uncharacterized protein At4g31330 integral component of membrane [GO:0016021] locus:2128151; AT4G31330 expressed protein Os09g0494600 protein (cDNA clone:002-131-H04, full insert sequence),Os08g0521000 protein Q0J0K7,Q6YZV5 Q0J0K7_ORYSJ,Q6YZV5_ORYSJ Os09g0494600 Os09g0494600 OsJ_29873 OSNPB_090494600,Os08g0521000 Os08g0521000 OJ1003_A09.25 OsJ_27970 OSNPB_080521000 ENOG411E1U7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os06g0707700 protein (Fragment),NB-ARC domain containing protein (Os12g0481700 protein) (Os12g0482100 protein),Os06g0707800 protein (Putative NBS-LRR disease resistance protein),Os06g0707350 protein (Fragment),Os06g0707800 protein (Fragment),Os12g0481400 protein (Fragment),Os06g0707400 protein,Os06g0707733 protein,Os06g0594200 protein Q0D9N1,Q2QQV7,Q5Z9J2,A0A0P0X0N5,A0A0P0X164,A0A0P0YAG0,A0A0N7KMP8,A0A0P0X0S1,A0A0P0WYI3 Q0D9N1_ORYSJ,Q2QQV7_ORYSJ,Q5Z9J2_ORYSJ,A0A0P0X0N5_ORYSJ,A0A0P0X164_ORYSJ,A0A0P0YAG0_ORYSJ,A0A0N7KMP8_ORYSJ,A0A0P0X0S1_ORYSJ,A0A0P0WYI3_ORYSJ Os06g0707700 Os06g0707700 OSNPB_060707700,Os12g0482100 LOC_Os12g29710 Os12g0481700 OSNPB_120481700 OSNPB_120482100,P0621D05.38-2 Os06g0707800 OSNPB_060707800,Os06g0707350 OSNPB_060707350,Os06g0707800 OSNPB_060707800,Os12g0481400 OSNPB_120481400,Os06g0707400 OSNPB_060707400,Os06g0707733 OSNPB_060707733,Os06g0594200 OSNPB_060594200 ENOG411E1U9 CYP96A5 Q9SJ08 Q9SJ08_ARATH Cytochrome P450, family 96, subfamily A, polypeptide 5 (Putative cytochrome P450) ARA:GQT-1337-MONOMER; 57988 Cytochrome P450, family 96, subfamily A, polypeptide 5 (Putative cytochrome P450) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2052526; AT2G21910 Cytochrome P450 NA NA NA NA NA NA NA ENOG411E1U8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os05g0433100 protein A0A0P0WMT0 A0A0P0WMT0_ORYSJ Os05g0433100 OSNPB_050433100 ENOG411DZW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os09g0128400 protein Q0J3D8,A0A0P0XIK9 Q0J3D8_ORYSJ,A0A0P0XIK9_ORYSJ Os09g0128400 OSNPB_090128400 ENOG411DZW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0538200 protein (Putative serine/threonine-specific protein kinase) (cDNA clone:J033088G15, full insert sequence) (cDNA clone:J033131H17, full insert sequence),Os07g0538400 protein (Fragment) Q6YVV8,Q0D5S8 Q6YVV8_ORYSJ,Q0D5S8_ORYSJ OJ1058_A12.145 Os07g0538200 OSNPB_070538200 P0696F12.7,Os07g0538400 Os07g0538400 OSNPB_070538400 ENOG411DZW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-related protein (Os05g0543600 protein) J9PDC7 J9PDC7_ORYSJ Os05g0543600 OSNPB_050543600 ENOG411DZW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cyclic nucleotide and calmodulin-regulated ion channel Os02g0789100 protein,Os06g0188000 protein (Fragment) B9F3N3,Q0DDZ0 B9F3N3_ORYSJ,Q0DDZ0_ORYSJ Os02g0789100 OsJ_08667 OSNPB_020789100,Os06g0188000 Os06g0188000 OSNPB_060188000 ENOG411DZW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain containing protein, expressed (Os03g0815800 protein) (Putative AP2 domain containing protein) (Putative AP2 domain transcription factor) (cDNA clone:J013145D23, full insert sequence) Q84TW0 Q84TW0_ORYSJ Os03g0815800 LOC_Os03g60120 Os03g0815800 OSJNBa0094J08.32 OSJNBb0042K11.4 OSNPB_030815800 ENOG411DZW0 Q7DLS5,O64379,Q949W5,F4I2Z8 Q7DLS5_ARATH,O64379_ARATH,Q949W5_ARATH,F4I2Z8_ARATH Transmembrane protein,AT1G22750 protein (Transmembrane protein),Transmembrane protein (Uncharacterized protein At1g22750) 27611,28787,27327,26983 Transmembrane protein,AT1G22750 protein (Transmembrane protein),Transmembrane protein (Uncharacterized protein At1g22750) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; vacuole [GO:0005773] locus:2199706; AT1G22750 Protein of unknown function (DUF1475) Os06g0581300 protein,Os06g0581300 protein (cDNA clone:J023076E04, full insert sequence) Q5VPL7,Q5VPL8 Q5VPL7_ORYSJ,Q5VPL8_ORYSJ P0566A10.33-2 Os06g0581300 OSNPB_060581300,P0566A10.33-1 Os06g0581300 OsJ_21794 OSNPB_060581300 ENOG411DZW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0693000 protein (Receptor protein kinase-like),Os08g0343000 protein,Os08g0343000 protein (Receptor-like kinase CHRK1-like),Os06g0690200 protein,Os06g0689600 protein Q5Z661,Q0J6A8,Q6ZB70,A0A0P0X0D3,A0A0P0X0E5 Q5Z661_ORYSJ,Q0J6A8_ORYSJ,Q6ZB70_ORYSJ,A0A0P0X0D3_ORYSJ,A0A0P0X0E5_ORYSJ Os06g0693000 Os06g0693000 OSNPB_060693000 P0532H03.40 P0550B04.10,Os08g0343000 Os08g0343000 OSNPB_080343000,Os08g0343000 OJ1119_B10.5 OJ1790_D02.36 OsJ_26974 OSNPB_080343000,Os06g0690200 OSNPB_060690200,Os06g0689600 OSNPB_060689600 ENOG411DZW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Expressed protein (Os03g0816800 protein) (cDNA clone:J023104J18, full insert sequence) Q10BI2 Q10BI2_ORYSJ Os03g0816800 LOC_Os03g60220 Os03g0816800 OSNPB_030816800 ENOG411DZW5 A0A1P8AX16,B3H597,F4IVK3 A0A1P8AX16_ARATH,B3H597_ARATH,F4IVK3_ARATH Putative methyltransferase family protein 24179,23280,28318 Putative methyltransferase family protein integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168],methyltransferase activity [GO:0008168] locus:2039538; AT2G26810 Putative methyltransferase Os07g0641600 protein (cDNA clone:J013152N07, full insert sequence) (cDNA clone:J033066O20, full insert sequence) Q7XHY7 Q7XHY7_ORYSJ P0524G08.115 Os07g0641600 OSNPB_070641600 ENOG411DZW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os01g0925700 protein (Fragment) A0A0P0VC65 A0A0P0VC65_ORYSJ Os01g0925700 OSNPB_010925700 ENOG411DZWZ TOM20-2,TOM20-3,TOM20-1,TOM20-4 P82873,P82874,P82872,P82805,A0A1P8AUU7,A0A1P8BC55,F4JEW8 TO202_ARATH,TO203_ARATH,TO201_ARATH,TO204_ARATH,A0A1P8AUU7_ARATH,A0A1P8BC55_ARATH,F4JEW8_ARATH Mitochondrial import receptor subunit TOM20-2 (Translocase of outer membrane 20 kDa subunit 2),Mitochondrial import receptor subunit TOM20-3 (Translocase of outer membrane 20 kDa subunit 3),Mitochondrial import receptor subunit TOM20-1 (Translocase of outer membrane 20 kDa subunit 1),Mitochondrial import receptor subunit TOM20-4 (Translocase of outer membrane 20 kDa subunit 4),Translocase outer membrane 20-2,Translocase of outer membrane 20-4,Translocase outer membrane 20-1 DISRUPTION PHENOTYPE: Slightly delayed flowering time. Triple mutants tom20-2-tom20-3-tom20-4 are viable. {ECO:0000269|PubMed:17981999}.,DISRUPTION PHENOTYPE: No visible phenotype. Triple mutants tom20-2-tom20-3-tom20-4 are vible but display a slightly delayed flowering time. {ECO:0000269|PubMed:17981999}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17981999}. Late flowering-J. Whelan-2007 FUNCTION: Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore. {ECO:0000269|PubMed:17981999}. MISCELLANEOUS: There are four genes (TOM20-1, TOM20-2, TOM20-3 and TOM20-4) which encode mitochondrial import receptor subunits TOM20.; MISCELLANEOUS: In mammals and fungi, the transmembrane domain is located at the N-terminus while it is located at the C-terminus in plants. The overall orientation of the protein in the membrane is therefore inverted.,MISCELLANEOUS: There are four genes (TOM20-1, TOM20-2, TOM20-3 and TOM20-4) which encode mitochondrial import receptor subunits TOM20, but TOM20-1 is the only one that has not been directly identified in isolated mitochondria from cv. Columbia.; MISCELLANEOUS: In mammals and fungi, the transmembrane domain is located at the N-terminus while it is located at the C-terminus in plants. The overall orientation of the protein in the membrane is therefore inverted. 23170,22565,21305,20973,16690,17654,28808 Mitochondrial import receptor subunit TOM20-2 (Translocase of outer membrane 20 kDa subunit 2),Mitochondrial import receptor subunit TOM20-3 (Translocase of outer membrane 20 kDa subunit 3),Mitochondrial import receptor subunit TOM20-1 (Translocase of outer membrane 20 kDa subunit 1),Mitochondrial import receptor subunit TOM20-4 (Translocase of outer membrane 20 kDa subunit 4),Translocase outer membrane 20-2,Translocase of outer membrane 20-4,Translocase outer membrane 20-1 cytosolic ribosome [GO:0022626]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrial outer membrane [GO:0005741]; mitochondrial outer membrane translocase complex [GO:0005742]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein import into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrial outer membrane [GO:0005741]; mitochondrial outer membrane translocase complex [GO:0005742]; mitochondrion [GO:0005739]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein import into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626],integral component of membrane [GO:0016021]; mitochondrial outer membrane translocase complex [GO:0005742]; protein import into mitochondrial outer membrane [GO:0045040],integral component of membrane [GO:0016021]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrial outer membrane translocase complex [GO:0005742]; vacuolar membrane [GO:0005774]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein import into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626],mitochondrial outer membrane translocase complex [GO:0005742]; protein import into mitochondrial outer membrane [GO:0045040],integral component of membrane [GO:0016021]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrial outer membrane translocase complex [GO:0005742]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein import into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}.,TISSUE SPECIFICITY: Barely detected in roots. {ECO:0000269|PubMed:17981999}. locus:2015904;,locus:2092045;,locus:2167737;,locus:2092035; AT1G27390,AT3G27080,AT3G27070,AT5G40930 Mitochondrial import receptor subunit Probable mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) Q5JJI4 TOM20_ORYSJ TOM20 Os01g0921600 LOC_Os01g69250 B1793G04.21 OJ1485_B09.8 OsJ_004482 OsJ_04580 FUNCTION: Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore (By similarity). {ECO:0000250}. MISCELLANEOUS: In mammals and fungi, the transmembrane domain is located at the N-terminus while it is located at the C-terminus in plants. The overall orientation of the protein in the membrane is therefore inverted. ENOG411DZWX BHLH47 Q9SN74 BH047_ARATH Transcription factor bHLH47 (Basic helix-loop-helix protein 47) (AtbHLH47) (bHLH 47) (Protein POPEYE) (Transcription factor EN 139) (bHLH transcription factor bHLH047) 26944 Transcription factor bHLH47 (Basic helix-loop-helix protein 47) (AtbHLH47) (bHLH 47) (Protein POPEYE) (Transcription factor EN 139) (bHLH transcription factor bHLH047) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion starvation [GO:0010106]; iron ion homeostasis [GO:0055072]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2079102; AT3G47640 Transcription factor Helix-loop-helix DNA-binding domain containing protein, expressed (Os03g0379300 protein) (Putative amelogenin) (cDNA clone:006-309-H04, full insert sequence) (cDNA clone:J013159M16, full insert sequence) Q10KL8 Q10KL8_ORYSJ LOC_Os03g26210 Os03g0379300 OsJ_11051 OSJNBa0013O08.3 OSNPB_030379300 ENOG411DZWS Q9LSI8,A0A1I9LP45,A0A1I9LP46 Q9LSI8_ARATH,A0A1I9LP45_ARATH,A0A1I9LP46_ARATH Methyltransferase (Uncharacterized protein At3g28460),Methyltransferase 34811,34455,29801 Methyltransferase (Uncharacterized protein At3g28460),Methyltransferase methyltransferase activity [GO:0008168] locus:2088947; AT3G28460 Conserved hypothetical protein 95 Expressed protein (Os03g0736400 protein) (cDNA clone:001-203-C03, full insert sequence) (cDNA clone:J023007E05, full insert sequence) Q10D93 Q10D93_ORYSJ LOC_Os03g52640 Os03g0736400 OSNPB_030736400 ENOG411DZWQ CAS,CaS Q9FN48,A0A1P8BCX7 CAS_ARATH,A0A1P8BCX7_ARATH Calcium sensing receptor, chloroplastic (Sulfurtransferase 3) (AtStr3),Calcium sensing receptor DISRUPTION PHENOTYPE: Reduced growth. {ECO:0000269|PubMed:18331354}. ethanolamine-phosphate cytidylyltransferase activity is reduced to 74%. Seedling phosphatidylethanolamine content is reduced by 20%. Dwarf when grown at 8oC. Earlier senescence of cotyladons and mature leaves. Pale green and smaller seeds. Delay in embryo maturation. Reduced fertility. Dwarf-E. Aro-2008 FUNCTION: Modulates cytoplasmic Ca(2+) concentration and is crucial for proper stomatal regulation in response to elevated levels of external Ca(2+). May function by regulating concentrations of inositol 1,4,5-trisphosphate (IP3), which in turn triggers release of Ca(2+) from internal stores. May play a role in de-etiolation. {ECO:0000269|PubMed:12968184, ECO:0000269|PubMed:17347443, ECO:0000269|PubMed:18507772, ECO:0000269|PubMed:21919914, ECO:0000269|PubMed:21940718}. MISCELLANEOUS: Plants silencing CAS show reduced chlorophyll content and early bolting. {ECO:0000305|PubMed:21919914}. 41285,32958 Calcium sensing receptor, chloroplastic (Sulfurtransferase 3) (AtStr3),Calcium sensing receptor chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; cellular response to calcium ion [GO:0071277]; de-etiolation [GO:0009704]; regulation of stomatal closure [GO:0090333],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Predominantly expressed in the shoot, including guard cells. {ECO:0000269|PubMed:12968184}. locus:2178287; AT5G23060 Calcium sensing receptor Os02g0729400 protein (Fragment) A0A0N7KG12 A0A0N7KG12_ORYSJ Os02g0729400 OSNPB_020729400 ENOG411DZWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os09g0529400 protein (cDNA clone:J023014M09, full insert sequence) Q69NG1 Q69NG1_ORYSJ Os09g0529400 OJ1531_B07.16 OsJ_30094 OSNPB_090529400 ENOG411DZWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0463000 protein Q60ER0 Q60ER0_ORYSJ Os05g0463000 OJ1280_A04.3 OsJ_18831 OSNPB_050463000 ENOG411DZWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear autoantigenic sperm protein (Histone-binding) Os07g0122400 protein (Tetratricopeptide repeat-containing protein-like) Q6Z4S6 Q6Z4S6_ORYSJ Os07g0122400 Os07g0122400 OSJNBa0057M23.124 OSNPB_070122400 ENOG411DZWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rap1-interacting factor 1 N terminal Os06g0173000 protein A3B8V4 A3B8V4_ORYSJ Os06g0173000 OsJ_20297 OSNPB_060173000 ENOG411DZWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase Os01g0137700 protein (cDNA clone:J013130L23, full insert sequence),Os01g0136700 protein (Fragment) Q0JQU7,A0A0P0UXW0 Q0JQU7_ORYSJ,A0A0P0UXW0_ORYSJ Os01g0137700 Os01g0137700 OsJ_00296 OSNPB_010137700,Os01g0136700 OSNPB_010136700 ENOG411DZWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF688) Os05g0514400 protein (Unknow protein) Q68Y47 Q68Y47_ORYSJ Os05g0514400 OSNPB_050514400 P0022D06.7 ENOG411DZWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DZWN NUP62 Q8L7F7 NUP62_ARATH Nuclear pore complex protein NUP62 (Nucleoporin 62) (NP62) (Protein EMBRYO DEFECTIVE 2766) Embryo defective; Cotyledon-D. Meinke-2007 73482 Nuclear pore complex protein NUP62 (Nucleoporin 62) (NP62) (Protein EMBRYO DEFECTIVE 2766) cytosol [GO:0005829]; nuclear envelope [GO:0005635]; nuclear periphery [GO:0034399]; nuclear pore central transport channel [GO:0044613]; nucleocytoplasmic transporter activity [GO:0005487]; phospholipid binding [GO:0005543]; structural constituent of nuclear pore [GO:0017056]; mRNA transport [GO:0051028]; negative regulation of auxin mediated signaling pathway [GO:0010930]; protein import into nucleus [GO:0006606]; ribonucleoprotein complex export from nucleus [GO:0071426] locus:2055547; AT2G45000 Nsp1-like C-terminal region Os01g0856600 protein (Fragment) Q0JHL7 Q0JHL7_ORYSJ Os01g0856600 Os01g0856600 OSNPB_010856600 ENOG411DZWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os04g0590100 protein (Fragment) A0A0P0WEB4 A0A0P0WEB4_ORYSJ Os04g0590100 OSNPB_040590100 ENOG411DZWC Q94F48 Q94F48_ARATH AT5g03560/F12E4 (Tetratricopeptide repeat (TPR)-like superfamily protein) 27831 AT5g03560/F12E4 (Tetratricopeptide repeat (TPR)-like superfamily protein) AT5G03560 Domain of unknown function (DUF1992) Os08g0560600 protein (cDNA clone:002-156-E06, full insert sequence) Q6YYX4 Q6YYX4_ORYSJ Os08g0560600 Os08g0560600 OSNPB_080560600 P0562A06.42 P0604E01.19 ENOG411DZWB A0A1P8AMT3,A0A1P8AMV0 A0A1P8AMT3_ARATH,A0A1P8AMV0_ARATH LOW protein: nuclease-like protein 45679,47166 LOW protein: nuclease-like protein Inherit from KOG: transposon protein Os04g0644200 protein A0A0P0WFT7 A0A0P0WFT7_ORYSJ Os04g0644200 OSNPB_040644200 ENOG411DZWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fungal trichothecene efflux pump (TRI12) Os02g0573500 protein (Putative monosaccharide transporter 1),Os02g0574000 protein (Fragment) Q6YXC0,Q0E070 Q6YXC0_ORYSJ,Q0E070_ORYSJ Os02g0573500 OSJNBb0046L23.14 OSNPB_020573500,Os02g0574000 Os02g0574000 OSNPB_020574000 ENOG411DZWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os07g0162700 protein Q0D8F9 Q0D8F9_ORYSJ Os07g0162700 Os07g0162700 OSNPB_070162700 ENOG411DZWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein,Os11g0588100 protein Q0D6F1,A0A0P0Y3Z0 Q0D6F1_ORYSJ,A0A0P0Y3Z0_ORYSJ Os07g0485500 Os07g0485500 OSNPB_070485500,Os11g0588100 OSNPB_110588100 ENOG411DZWD A0A1P8AZQ0,F4IT02 A0A1P8AZQ0_ARATH,F4IT02_ARATH Uncharacterized protein 29039,37016 Uncharacterized protein locus:2064184; AT2G38570 Inherit from NOG: PRC-barrel domain protein Expressed protein (Os03g0334100 protein) (cDNA clone:J013145A09, full insert sequence) Q10LU9 Q10LU9_ORYSJ LOC_Os03g21630 Os03g0334100 OSNPB_030334100 ENOG411DQ74 MUB3.12 B7ZWR7,F4KF16 B7ZWR7_ARATH,F4KF16_ARATH At1g22460 (O-fucosyltransferase family protein),O-fucosyltransferase family protein 64514,60057 At1g22460 (O-fucosyltransferase family protein),O-fucosyltransferase family protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2009467;,locus:2174754; AT1G22460,AT5G64600 DUF246 domain-containing protein Os12g0190100 protein (Plant protein family protein, expressed) (cDNA clone:002-148-A04, full insert sequence),Os06g0219400 protein Q2QWM8,A0A0P0WU21 Q2QWM8_ORYSJ,A0A0P0WU21_ORYSJ LOC_Os12g08820 Os12g0190100 OSNPB_120190100,Os06g0219400 OSNPB_060219400 ENOG411DQ75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA momilactone A synthase-like NA NA NA NA NA NA NA ENOG411DQ76 PTAC2 Q9S7Q2 PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2) DISRUPTION PHENOTYPE: Lethal without exogenous carbon sources. Decrease of total chlorophyll content as well as a decrease in the chlorophyll a:b ratio. Unequally expanded grana thylakoids. Altered expression profiles of plastid genes. {ECO:0000269|PubMed:16326926}. Seedling lethal (inferred from pigment defect); Albino embryos-R. Oelmuller-2006 FUNCTION: Involved in plastid gene expression. {ECO:0000269|PubMed:16326926}. 96326 Pentatricopeptide repeat-containing protein At1g74850, chloroplastic (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2) chloroplast [GO:0009507]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; positive regulation of transcription, DNA-templated [GO:0045893]; RNA modification [GO:0009451]; transcription from plastid promoter [GO:0042793] TISSUE SPECIFICITY: Mostly expressed in leaves, stems and flowers, but barely in roots. {ECO:0000269|PubMed:16326926}. locus:2027166; AT1G74850 Pentatricopeptide repeat-containing protein At1g74850 Os03g0824100 protein (Fragment) Q0DM76 Q0DM76_ORYSJ Os03g0824100 OSNPB_030824100 ENOG411DQ77 Q8H0Z0,O50071 Q8H0Z0_ARATH,O50071_ARATH Protein kinase superfamily protein (Putative serine/threonine protein kinase),Protein kinase superfamily protein (Putative serine threonine protein kinase) (Putative serine/threonine kinase) (Putative serine/threonine protein kinase) R-ATH-8856828; 74511,72443 Protein kinase superfamily protein (Putative serine/threonine protein kinase),Protein kinase superfamily protein (Putative serine threonine protein kinase) (Putative serine/threonine kinase) (Putative serine/threonine protein kinase) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; regulation of endocytosis [GO:0030100],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2046462; AT2G32850 STYKc Os02g0591900 protein (Putative AAK1 protein),Cyclin G-associated kinase-like protein (Os02g0591900 protein) (cDNA clone:J023140C12, full insert sequence),Os09g0279100 protein Q69L75,Q69L76,A0A0N7KQH2 Q69L75_ORYSJ,Q69L76_ORYSJ,A0A0N7KQH2_ORYSJ OSJNBa0016G10.6-2 Os02g0591900 OSNPB_020591900,Os02g0591900 OsJ_07336 OSJNBa0016G10.6-1 OSNPB_020591900,Os09g0279100 OSNPB_090279100 ENOG411DQ70 UBP11,UBP9,UBP8,UBP10 Q9MAQ3,Q93Y01,Q9C585,Q9ZSB5 UBP11_ARATH,UBP9_ARATH,UBP8_ARATH,UBP10_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 (EC 3.4.19.12) (Deubiquitinating enzyme 11) (AtUBP11) (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11),Ubiquitin carboxyl-terminal hydrolase 9 (EC 3.4.19.12) (Deubiquitinating enzyme 9) (AtUBP9) (Ubiquitin thioesterase 9) (Ubiquitin-specific-processing protease 9),Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.4.19.12) (Deubiquitinating enzyme 8) (AtUBP8) (Ubiquitin thioesterase 8) (Ubiquitin-specific-processing protease 8),Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.4.19.12) (Deubiquitinating enzyme 10) (AtUBP10) (Ubiquitin thioesterase 10) (Ubiquitin-specific-processing protease 10) FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT1G32850-MONOMER;,ARA:GQT-1184-MONOMER;,ARA:GQT-1231-MONOMER;,ARA:AT4G10570-MONOMER; R-ATH-5689880; 3.4.19.12 101175,102649,98171,103699 Putative ubiquitin carboxyl-terminal hydrolase 11 (EC 3.4.19.12) (Deubiquitinating enzyme 11) (AtUBP11) (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11),Ubiquitin carboxyl-terminal hydrolase 9 (EC 3.4.19.12) (Deubiquitinating enzyme 9) (AtUBP9) (Ubiquitin thioesterase 9) (Ubiquitin-specific-processing protease 9),Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.4.19.12) (Deubiquitinating enzyme 8) (AtUBP8) (Ubiquitin thioesterase 8) (Ubiquitin-specific-processing protease 8),Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.4.19.12) (Deubiquitinating enzyme 10) (AtUBP10) (Ubiquitin thioesterase 10) (Ubiquitin-specific-processing protease 10) thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2037985;,locus:2139222;,locus:505006627;,locus:2139202; AT1G32850,AT4G10590,AT5G22030,AT4G10570 ubiquitin carboxyl-terminal hydrolase Os10g0160000 protein (Ubiquitin carboxyl-terminal hydrolase family protein, expressed) (cDNA clone:J033072M05, full insert sequence),Os11g0667400 protein,Os07g0160000 protein,Os10g0160000 protein,Os09g0343900 protein,Os12g0621000 protein Q33AW7,Q2QZX2,A0A0P0X2E4,A0A0P0XRX1,A0A0N7KQM0,A0A0P0YDU9 Q33AW7_ORYSJ,Q2QZX2_ORYSJ,A0A0P0X2E4_ORYSJ,A0A0P0XRX1_ORYSJ,A0A0N7KQM0_ORYSJ,A0A0P0YDU9_ORYSJ Os10g0160000 LOC_Os10g07270 Os10g0160000 OsJ_30790 OSNPB_100160000,Os11g0667400 LOC_Os11g44540 OSNPB_110667400,Os07g0160000 OSNPB_070160000,Os10g0160000 OSNPB_100160000,Os09g0343900 OSNPB_090343900,Os12g0621000 OSNPB_120621000 ENOG411DQ71 F28J7.36 Q93ZF0,Q9SG99,Q9SGI2,A0A1I9LNL3,A0A1I9LNL4 Q93ZF0_ARATH,Q9SG99_ARATH,Q9SGI2_ARATH,A0A1I9LNL3_ARATH,A0A1I9LNL4_ARATH AT3g01980/F28J7_36 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein (Putative dehydrogenase),F28J7.36 protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein 23202,29196,32645,26549,19754 AT3g01980/F28J7_36 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein (Putative dehydrogenase),F28J7.36 protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; peroxisome [GO:0005777] locus:2078693; AT3G01980 short chain dehydrogenase Os03g0850000 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (Putative reductase) (cDNA clone:001-202-F08, full insert sequence) Q852E3 Q852E3_ORYSJ LOC_Os03g63290 Os03g0850000 OSJNBb0096M04.25 OSNPB_030850000 ENOG411DQ72 KAT3 P92960,F4JV35,F4JV33 KAT3_ARATH,F4JV35_ARATH,F4JV33_ARATH Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel TKC),Potassium channel protein Sensitive to potassium starvation-R. Hedrich-2009 FUNCTION: Probable modulatory (alpha) subunit of inward-rectifying potassium channels. Could mediate potassium uptake from the soil solution by plant roots in association with AKT1. {ECO:0000269|PubMed:11904452, ECO:0000269|PubMed:12678562}. 75598,68393,75484 Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel TKC),Potassium channel protein endoplasmic reticulum [GO:0005783]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; voltage-gated potassium channel activity [GO:0005249]; high-affinity potassium ion import [GO:0010163]; regulation of membrane potential [GO:0042391]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; voltage-gated potassium channel activity [GO:0005249] TISSUE SPECIFICITY: Expressed predominantly in root hairs and root endodermis and, at a lower level, in leaf nodes, trichomes, and hydathodes. {ECO:0000269|PubMed:11904452, ECO:0000269|PubMed:12678562}. locus:2005524; AT4G32650 Potassium channel Potassium channel KAT4,Potassium channel KAT6,Putative potassium channel KAT5,Os04g0117500 protein (Fragment),Os01g0718700 protein (Fragment),Os06g0254200 protein Q652U9,A2ZX97,Q7XT08,A0A0P0W661,A0A0P0V7H3,A0A0P0WV47 KAT4_ORYSJ,KAT6_ORYSJ,KAT5_ORYSJ,A0A0P0W661_ORYSJ,A0A0P0V7H3_ORYSJ,A0A0P0WV47_ORYSJ Os06g0254200 LOC_Os06g14310 P0046H10.36 P0592E11.6,Os01g0718700 LOC_Os01g52070 OsJ_03266,Os04g0117500 LOC_Os04g02720 OsJ_13587 OSJNBb0050O03.14,Os04g0117500 OSNPB_040117500,Os01g0718700 OSNPB_010718700,Os06g0254200 OSNPB_060254200 FUNCTION: Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization (By similarity). {ECO:0000250}.,FUNCTION: Putative inward-rectifying potassium channel. {ECO:0000250}. ENOG411DQ73 EXO Q9ZPE7 EXO_ARATH Protein EXORDIUM DISRUPTION PHENOTYPE: Reduced leaf size, root length and biomass production due to diminished expansion of epidermis and parenchyma cells. {ECO:0000269|PubMed:19216774}. Reduced biomass. Plants are smaller due to defects in cell expansion. Root length is decreased. Slightly delayed flowering. Reduced biomass; Root growth sensitive to brassinosteroids-C. Mussig-2009 FUNCTION: Required for cell expansion in leaves. May mediate brassinosteroid (BR)-induced leaf growth. May play a role in the control of BR responses in roots. May be involved in signaling processes that coordinate BR responses with environmental or developmental signals. {ECO:0000269|PubMed:15063727, ECO:0000269|PubMed:19216774}. MISCELLANEOUS: Over-expression of EXO promotes growth in both shoots and roots. {ECO:0000305|PubMed:15063727}. 33599 Protein EXORDIUM apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; response to brassinosteroid [GO:0009741] TISSUE SPECIFICITY: Expressed in root tips, vascular tissue of roots, shoot apex, rosette leaves and embryos. {ECO:0000269|PubMed:12943541}. locus:2138753; AT4G08950 Phi-1 protein Os02g0757100 protein (Putative phi-1) Q6Z7W3 Q6Z7W3_ORYSJ Os02g0757100 Os02g0757100 OsJ_08448 OSNPB_020757100 P0471A11.10 ENOG411DQ78 F4HPS7,F4HPS6 F4HPS7_ARATH,F4HPS6_ARATH TAF RNA polymerase I subunit A 54869,71140 TAF RNA polymerase I subunit A locus:2009570; AT1G53200 NA Os06g0244100 protein,Os06g0244100 protein (cDNA clone:J013169N13, full insert sequence) Q654G7,Q654G8 Q654G7_ORYSJ,Q654G8_ORYSJ P0412C04.14-2 Os06g0244100 OSNPB_060244100,P0412C04.14-1 Os06g0244100 OSNPB_060244100 ENOG411DQ79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q8H333 Q8H333_ORYSJ Os08g0421850 Os08g0421850 OSJNBa0077M12.114 OSNPB_080421850 ENOG411DQ7D LRK10L-1.5 F4I3V3 LRL15_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.5) 2.7.11.1 70530 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2196754; AT1G69910 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DQ7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os04g0325300 protein (Fragment),Os11g0668100 protein,Os06g0279900 protein Q0JE52,A0A0P0Y554,A0A0P0WVS7 Q0JE52_ORYSJ,A0A0P0Y554_ORYSJ,A0A0P0WVS7_ORYSJ Os04g0325300 Os04g0325300 OSNPB_040325300,Os11g0668100 OSNPB_110668100,Os06g0279900 OSNPB_060279900 ENOG411DQ7F SUA F4JCU0,A0A1I9LMI4,A0A1I9LMI6 SUA_ARATH,A0A1I9LMI4_ARATH,A0A1I9LMI6_ARATH SUPPRESSOR OF ABI3-5 (REQUIRED FOR SNC4-1D protein 1) (Splicing factor SUA),Suppressor of abi3-5 FUNCTION: Splicing factor that controls alternative splicing of the developmental regulator ABI3. Reduces splicing of a cryptic intron in ABI3, leading to a decreased in ABI3-beta transcript (PubMed:20525852). Regulates the splicing of the receptor-like kinase SNC4/LRKL-2.6 (PubMed:25267732). {ECO:0000269|PubMed:20525852, ECO:0000269|PubMed:25267732}. R-ATH-72163; 112567,107426,78756 SUPPRESSOR OF ABI3-5 (REQUIRED FOR SNC4-1D protein 1) (Splicing factor SUA),Suppressor of abi3-5 nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; mRNA splicing, via spliceosome [GO:0000398]; regulation of RNA splicing [GO:0043484],metal ion binding [GO:0046872]; RNA binding [GO:0003723],RNA binding [GO:0003723] TISSUE SPECIFICITY: Ubiquitous with highest expression in siliques toward the end of seed maturation. {ECO:0000269|PubMed:20525852}. locus:2080355; AT3G54230 ZnF_RBZ Os02g0167500 protein (Fragment) A0A0P0VFD5 A0A0P0VFD5_ORYSJ Os02g0167500 OSNPB_020167500 ENOG411DQ7G GB1 Q38921 Q38921_ARATH At5g52210 (GTP-binding protein 1) (GTP-binding protein ATGB1) (GTP-binding protein-like) R-ATH-6811440; 23141 At5g52210 (GTP-binding protein 1) (GTP-binding protein ATGB1) (GTP-binding protein-like) intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264] locus:2145151; AT5G52210 ADP-ribosylation factor-related protein Os03g0392300 protein (Putative GTP-binding protein) (Small GTP-binding protein domain containing protein, expressed) (cDNA clone:J023110F23, full insert sequence),Os07g0620400 protein (Putative GTP-binding protein) (cDNA clone:J013030K11, full insert sequence) Q75KN8,Q7XI38 Q75KN8_ORYSJ,Q7XI38_ORYSJ OSJNBa0065F09.11 LOC_Os03g27450 Os03g0392300 OsJ_11126 OSNPB_030392300,P0594D10.113 Os07g0620400 OSNPB_070620400 ENOG411DQ7A WRKY47 Q9ZSI7 WRK47_ARATH Probable WRKY transcription factor 47 (WRKY DNA-binding protein 47) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 53707 Probable WRKY transcription factor 47 (WRKY DNA-binding protein 47) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2133432; AT4G01720 WRKY transcription factor Os05g0137500 protein,Os01g0289600 protein A0A0P0WHU6,A0A0P0V159 A0A0P0WHU6_ORYSJ,A0A0P0V159_ORYSJ Os05g0137500 OSNPB_050137500,Os01g0289600 OSNPB_010289600 ENOG411DQ7B MCD1 Q8GWA7,A0A1P8AQD4 MCD1_ARATH,A0A1P8AQD4_ARATH Protein MULTIPLE CHLOROPLAST DIVISION SITE 1,Multiple chloroplast division site 1 DISRUPTION PHENOTYPE: Heterogeneous population of chloroplasts with variable size and multiple division sites. {ECO:0000269|PubMed:19135368}. defective in chloroplast division FUNCTION: Required for chloroplast division. Regulates FtsZ ring positioning in chloroplasts. Determines the site of chloroplast division in concert with MIND1. Not directly involved in ring formation, but probably required for MIND1 localization to regulate FtsZ ring formation. 39416,28400 Protein MULTIPLE CHLOROPLAST DIVISION SITE 1,Multiple chloroplast division site 1 chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; chloroplast fission [GO:0010020],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; chloroplast fission [GO:0010020] locus:2030512; AT1G20830 NA OSJNBa0013K16.5 protein (Os04g0584900 protein) (cDNA clone:J033114E24, full insert sequence),Os04g0584900 protein (Fragment) Q7XP62,A0A0P0WE51 Q7XP62_ORYSJ,A0A0P0WE51_ORYSJ Os04g0584900 Os04g0584900 OsJ_15926 OSJNBa0013K16.5 OSNPB_040584900,Os04g0584900 OSNPB_040584900 ENOG411DQ7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase M16 inactive domain NA NA NA NA NA NA NA ENOG411DQ7M VPS2.1 Q9SKI2,A0A1P8AZU4 VPS2A_ARATH,A0A1P8AZU4_ARATH Vacuolar protein sorting-associated protein 2 homolog 1 (AtVPS2-1) (Charged multivesicular body protein 2 homolog 1) (ESCRT-III complex subunit VPS2 homolog 1) (SNF7-like protein),SNF7 family protein FUNCTION: Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo (By similarity). {ECO:0000250}. R-ATH-1632852;R-ATH-432720;R-ATH-917729; 25292,22790 Vacuolar protein sorting-associated protein 2 homolog 1 (AtVPS2-1) (Charged multivesicular body protein 2 homolog 1) (ESCRT-III complex subunit VPS2 homolog 1) (SNF7-like protein),SNF7 family protein ESCRT III complex [GO:0000815]; late endosome [GO:0005770]; multivesicular body [GO:0005771]; intralumenal vesicle formation [GO:0070676]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],intracellular [GO:0005622]; vacuolar transport [GO:0007034] locus:2054612; AT2G06530 vacuolar protein sorting-associated protein 2 homolog BRI1-KD interacting protein 109 (Os11g0703400 protein),Breast adenocarcinoma marker-like (Os07g0236800 protein) (cDNA clone:J023078G13, full insert sequence) Q762A5,Q8H430 Q762A5_ORYSJ,Q8H430_ORYSJ bip109 Os11g0703400 OSNPB_110703400,P0407H12.144 Os07g0236800 OSNPB_070236800 ENOG411DQ7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF863) Expressed protein (Os12g0577800 protein),Os12g0577800 protein (Fragment) Q2QN61,A0A0P0YCF6 Q2QN61_ORYSJ,A0A0P0YCF6_ORYSJ LOC_Os12g38870 Os12g0577800 OSNPB_120577800,Os12g0577800 OSNPB_120577800 ENOG411DQ7H MJB20.14 F4INK3 F4INK3_ARATH Polynucleotide adenylyltransferase family protein 85424 Polynucleotide adenylyltransferase family protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nucleotidyltransferase activity [GO:0016779]; RNA binding [GO:0003723]; mitochondrial mRNA polyadenylation [GO:0097222] locus:2053913; AT2G17580 Poly A polymerase head domain Os03g0131400 protein (PolyA polymerase family protein, expressed) Q10S77 Q10S77_ORYSJ Os03g0131400 LOC_Os03g03930 Os03g0131400 OsJ_09295 OSNPB_030131400 ENOG411DQ7I TIM17-2,TIM17-1,TIM17-3 Q9SP35,Q9LN27,Q9LYG1 TI172_ARATH,TI171_ARATH,TI173_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2,Mitochondrial import inner membrane translocase subunit TIM17-1,Mitochondrial import inner membrane translocase subunit TIM17-3 DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22730406}. FUNCTION: Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:15722347}.,FUNCTION: Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes (By similarity). {ECO:0000250}. 25571,22907,13853 Mitochondrial import inner membrane translocase subunit TIM17-2,Mitochondrial import inner membrane translocase subunit TIM17-1,Mitochondrial import inner membrane translocase subunit TIM17-3 integral component of mitochondrial inner membrane [GO:0031305]; mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; protein import into mitochondrial matrix [GO:0030150],integral component of mitochondrial inner membrane [GO:0031305]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; protein import into mitochondrial matrix [GO:0030150] DEVELOPMENTAL STAGE: Peak of expression during cotyledon development. {ECO:0000269|PubMed:12692332}. TISSUE SPECIFICITY: Expressed in roots, flowers, leaves and young cotyledons. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}.,TISSUE SPECIFICITY: Expressed in flowers, leaves and cotyledons, and at very low levels in roots. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}.,TISSUE SPECIFICITY: Expressed in cotyledons, roots, flowers and leaves. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}. locus:2049771;,locus:2012918;,locus:2181890; AT2G37410,AT1G20350,AT5G11690 Mitochondrial import inner membrane translocase subunit Os07g0604550 protein,Os07g0604500 protein (Translocase inner membrane-like protein) (cDNA clone:002-107-C05, full insert sequence) (cDNA clone:J023009D04, full insert sequence),Os03g0415600 protein (Fragment) B9FYB1,Q6Z4G6,A0A0N7KHF8 B9FYB1_ORYSJ,Q6Z4G6_ORYSJ,A0A0N7KHF8_ORYSJ Os07g0604550 OsJ_25040 OSNPB_070604550,Os07g0604500 Os07g0604500 OSJNBb0040H10.15 OSNPB_070604500,Os03g0415600 OSNPB_030415600 ENOG411DQ7J A0A1P8ARZ3,F4HYA7,A0A1P8ARW7,A0A1P8ARV9 A0A1P8ARZ3_ARATH,F4HYA7_ARATH,A0A1P8ARW7_ARATH,A0A1P8ARV9_ARATH FAM91 carboxy-terminus protein 99814,111286,109151,102683 FAM91 carboxy-terminus protein locus:2203294; AT1G35220 Inherit from KOG: dihydrodiol dehydrogenase Os01g0303200 protein (Transmembrane domain, a coiled coil-4 domain, of eukaryotic origin (91.3 kD)-like protein),Os05g0355133 protein Q657I0,A0A0N7KKL6 Q657I0_ORYSJ,A0A0N7KKL6_ORYSJ Os01g0303200 Os01g0303200 B1146F03.33 OsJ_01450 OSNPB_010303200,Os05g0355133 OSNPB_050355133 ENOG411DQ7K PCMP-E89 Q9LRV9 PP228_ARATH Pentatricopeptide repeat-containing protein At3g13880 83194 Pentatricopeptide repeat-containing protein At3g13880 intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial RNA modification [GO:1900864] locus:2087969; AT3G13880 Pentatricopeptide repeat-containing protein Os01g0959600 protein A0A0P0VD44 A0A0P0VD44_ORYSJ Os01g0959600 OSNPB_010959600 ENOG411DQ7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein Rf1 mitochondrial-like Os04g0350000 protein (Fragment),Os08g0248400 protein (Fragment),Os10g0497366 protein,Os10g0495100 protein (Putative chloroplast RNA processing protein) (Rf1 protein, mitochondrial, putative, expressed),Os08g0107700 protein (Fragment),Os10g0501700 protein (Putative leaf protein) (Rf1 protein, mitochondrial, putative),Os10g0495400 protein (Fragment),Os04g0350000 protein,Os04g0351333 protein (Fragment),Os04g0349600 protein Q0JDZ4,Q0J6Y7,Q76C21,Q8LNU0,Q0J8K1,Q8LNF4,A0A0P0XVR9,A0A0P0W8Y0,A0A0P0W9E5,A0A0P0W8V8,A0A0P0W913 Q0JDZ4_ORYSJ,Q0J6Y7_ORYSJ,Q76C21_ORYSJ,Q8LNU0_ORYSJ,Q0J8K1_ORYSJ,Q8LNF4_ORYSJ,A0A0P0XVR9_ORYSJ,A0A0P0W8Y0_ORYSJ,A0A0P0W9E5_ORYSJ,A0A0P0W8V8_ORYSJ,A0A0P0W913_ORYSJ Os04g0350000 Os04g0350000 OSNPB_040350000,Os08g0248400 Os08g0248400 OSNPB_080248400,Os10g0497366 OSNPB_100497366,OSJNBa0041P03.13 LOC_Os10g35230 Os10g0495100 OsJ_32018 OSNPB_100495100,Os08g0107700 Os08g0107700 OSNPB_080107700,Os10g0501700 LOC_Os10g35790 Os10g0501700 OsJ_32064 OSJNBa0078O01.29 OSNPB_100501700,Os10g0495400 OSNPB_100495400,Os04g0350000 OSNPB_040350000,Os04g0351333 OSNPB_040351333,Os04g0349600 OSNPB_040349600 ENOG411DQ7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NA NA NA NA NA NA NA ENOG411DQ7V Q6NKQ6,A0A1I9LN63,A0A1I9LN59,F4J1H2,A0A1I9LN58,A0A1I9LNY9,A0A1I9LN64 Q6NKQ6_ARATH,A0A1I9LN63_ARATH,A0A1I9LN59_ARATH,F4J1H2_ARATH,A0A1I9LN58_ARATH,A0A1I9LNY9_ARATH,A0A1I9LN64_ARATH At3g16220 (Putative eukaryotic LigT),Putative eukaryotic LigT 29478,45395,41629,50079,40964,22585,36457 At3g16220 (Putative eukaryotic LigT),Putative eukaryotic LigT RNA binding [GO:0003723],mitochondrion [GO:0005739]; RNA binding [GO:0003723] locus:2094907;,locus:2094967; AT3G16220,AT3G16230 AKAP7 2'5' RNA ligase-like domain Os01g0231900 protein,Os01g0231800 protein (Fragment) Q5NB67,A0A0P0V044 Q5NB67_ORYSJ,A0A0P0V044_ORYSJ Os01g0231900 Os01g0231900 OSNPB_010231900 P0431F01.23,Os01g0231800 OSNPB_010231800 ENOG411DQ7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0750600 protein (Putative receptor protein kinase PERK1) (cDNA clone:002-108-G09, full insert sequence) (cDNA clone:J033109I17, full insert sequence),Os05g0516400 protein Q5JN60,A0A0N7KL32 Q5JN60_ORYSJ,A0A0N7KL32_ORYSJ Os01g0750600 Os01g0750600 OsJ_03466 OSNPB_010750600 P0046E05.16,Os05g0516400 OSNPB_050516400 ENOG411DQ7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Expressed protein (Os11g0252400 protein),Expressed protein (Os11g0251400 protein) (cDNA clone:001-115-E06, full insert sequence),Os11g0253100 protein,Expressed protein (Os11g0252400 protein) (cDNA clone:J013041F08, full insert sequence),Os11g0250600 protein,Expressed protein (Os11g0251400 protein) (cDNA clone:J013147L18, full insert sequence),Os11g0251200 protein,Os11g0251400 protein (Fragment),Os11g0269500 protein,Os11g0252400 protein (Fragment),Os11g0247700 protein,Os11g0261000 protein Q53N01,B7E8K4,Q53N04,Q53N02,A3CA83,Q53JM5,A0A0P0Y193,A0A0N7KSQ2,A0A0P0Y1D4,A0A0P0Y128,A0A0P0Y0Q7,A0A0P0Y0M4,A0A0P0Y0T5 Q53N01_ORYSJ,B7E8K4_ORYSJ,Q53N04_ORYSJ,Q53N02_ORYSJ,A3CA83_ORYSJ,Q53JM5_ORYSJ,A0A0P0Y193_ORYSJ,A0A0N7KSQ2_ORYSJ,A0A0P0Y1D4_ORYSJ,A0A0P0Y128_ORYSJ,A0A0P0Y0Q7_ORYSJ,A0A0P0Y0M4_ORYSJ,A0A0P0Y0T5_ORYSJ Os11g0252400 LOC_Os11g14570 OSNPB_110252400,Os11g0251400 LOC_Os11g14544 OSNPB_110251400,Os11g0253100 LOC_Os11g14630 OSNPB_110253100,LOC_Os11g14570 Os11g0252400 OsJ_19123 OSNPB_110252400,Os11g0250600 OsJ_33544 OSNPB_110250600,Os11g0251400 LOC_Os11g14540 LOC_Os11g14544 Os11g0251400 OsJ_33549 OSNPB_110251400,Os11g0251200 OSNPB_110251200,Os11g0251400 OSNPB_110251400,Os11g0269500 OSNPB_110269500,Os11g0252400 OSNPB_110252400,Os11g0247700 OSNPB_110247700,Os11g0261000 OSNPB_110261000 ENOG411DQ7Q MO2,MO3 O81816,Q9FLC2 MO2_ARATH,MO3_ARATH Monooxygenase 2 (AtMO2) (EC 1.14.13.-),Monooxygenase 3 (AtMO3) (EC 1.14.13.-) 1.14.13.- 45505,45607 Monooxygenase 2 (AtMO2) (EC 1.14.13.-),Monooxygenase 3 (AtMO3) (EC 1.14.13.-) FAD binding [GO:0071949]; monooxygenase activity [GO:0004497]; defense response to fungus [GO:0050832]; secondary metabolite biosynthetic process [GO:0044550],FAD binding [GO:0071949]; monooxygenase activity [GO:0004497]; secondary metabolite biosynthetic process [GO:0044550] TISSUE SPECIFICITY: Expressed in seeds, seedlings, roots, leaves, flowers, pollen and siliques. {ECO:0000269|PubMed:10216258}. locus:2121254;,locus:2153499; AT4G38540,AT5G05320 FAD binding domain containing protein expressed FAD binding domain containing protein, expressed (Os03g0154100 protein),FAD binding domain containing protein, expressed (Os03g0154000 protein) (cDNA clone:J033118I15, full insert sequence),FAD binding domain containing protein, expressed (Os03g0153900 protein),Os03g0153500 protein (Fragment),Os03g0153100 protein,Os03g0155000 protein (Fragment) Q10RL6,Q10RL8,Q10RL9,A0A0P0VT70,A0A0P0VT64,A0A0P0VT72 Q10RL6_ORYSJ,Q10RL8_ORYSJ,Q10RL9_ORYSJ,A0A0P0VT70_ORYSJ,A0A0P0VT64_ORYSJ,A0A0P0VT72_ORYSJ LOC_Os03g05920 Os03g0154100 OSNPB_030154100,LOC_Os03g05910 Os03g0154000 OsJ_09453 OSNPB_030154000,LOC_Os03g05900 Os03g0153900 OsJ_09452 OSNPB_030153900,Os03g0153500 OSNPB_030153500,Os03g0153100 OSNPB_030153100,Os03g0155000 OSNPB_030155000 ENOG411DQ7R Q8H1F4,Q940S5,Q84LG4,A0A1I9LRF7,A0A1I9LRF5,A0A1I9LRF9 COPZ3_ARATH,COPZ1_ARATH,COPZ2_ARATH,A0A1I9LRF7_ARATH,A0A1I9LRF5_ARATH,A0A1I9LRF9_ARATH Coatomer subunit zeta-3 (Zeta-3-coat protein) (Zeta-COP 3),Coatomer subunit zeta-1 (Zeta-1-coat protein) (Zeta-COP 1),Coatomer subunit zeta-2 (Zeta-2-coat protein) (Zeta-COP 2),SNARE-like superfamily protein FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.; FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. {ECO:0000250}. R-ATH-6807878;R-ATH-6811434; 19877,19615,19739,19753,15287,28866 Coatomer subunit zeta-3 (Zeta-3-coat protein) (Zeta-COP 3),Coatomer subunit zeta-1 (Zeta-1-coat protein) (Zeta-COP 1),Coatomer subunit zeta-2 (Zeta-2-coat protein) (Zeta-COP 2),SNARE-like superfamily protein COPI-coated vesicle membrane [GO:0030663]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],COPI-coated vesicle membrane [GO:0030663]; Golgi membrane [GO:0000139]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],protein transport [GO:0015031] locus:2133569;,locus:2206026; AT4G08520,AT1G60970,AT3G09800 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles which further mediate biosynthetic protein transport from the ER via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) Coatomer subunit zeta-2 (Non-clathrin coat protein zeta2-COP) (Zeta-2-coat protein) (Zeta-COP 2),Coatomer subunit zeta-3 (Zeta-3-coat protein) (Zeta-COP 3),Os01g0838800 protein (cDNA clone:J013067M01, full insert sequence),Os02g0317400 protein Q6Z844,Q5NA06,B7EC39,A0A0P0VI65 COPZ2_ORYSJ,COPZ3_ORYSJ,B7EC39_ORYSJ,A0A0P0VI65_ORYSJ COPZ2 Os02g0317400 LOC_Os02g21250 OJ1134_B09.3-1 OsJ_006260 OsJ_06451 P0572D06.37-1,Os01g0838800 LOC_Os01g62150 P0031D11.22-1,Os01g0838800 OSNPB_010838800,Os02g0317400 OSNPB_020317400 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.; FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. {ECO:0000250}. ENOG411DQ7S Q8L7A9 AP4E_ARATH AP-4 complex subunit epsilon (AP-4 adaptor complex subunit epsilon) (Adaptor-related protein complex 4 subunit epsilon) (Epsilon subunit of AP-4) (Epsilon-adaptin) FUNCTION: Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. {ECO:0000250}. R-ATH-432720; 103735 AP-4 complex subunit epsilon (AP-4 adaptor complex subunit epsilon) (Adaptor-related protein complex 4 subunit epsilon) (Epsilon subunit of AP-4) (Epsilon-adaptin) AP-4 adaptor complex [GO:0030124]; clathrin-coated pit [GO:0005905]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasmodesma [GO:0009506]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2028586; AT1G31730 AP-4 complex subunit Os01g0916200 protein (Fragment) A0A0P0VC43,A0A0P0VC13 A0A0P0VC43_ORYSJ,A0A0P0VC13_ORYSJ Os01g0916200 OSNPB_010916200 ENOG411DQ7X MUB3.6,MUB3.7 Q5BPE9,Q9LXD0,Q9FLG3,Q9SH64 Q5BPE9_ARATH,Q9LXD0_ARATH,Q9FLG3_ARATH,Q9SH64_ARATH Mucin-like protein,At5g09670 (Gb|AAF24563.1) (Loricrin-like protein) (Uncharacterized protein At5g09670) (Uncharacterized protein F17I14_140),Emb|CAB89363.1 (Loricrin-like protein) (Uncharacterized protein At5g64550),F22C12.10 (WRKY transcription factor) 47257,56859,65959,67493 Mucin-like protein,At5g09670 (Gb|AAF24563.1) (Loricrin-like protein) (Uncharacterized protein At5g09670) (Uncharacterized protein F17I14_140),Emb|CAB89363.1 (Loricrin-like protein) (Uncharacterized protein At5g64550),F22C12.10 (WRKY transcription factor) locus:2174779;,locus:2144796;,locus:2174789;,locus:2024638; AT5G64540,AT5G09670,AT5G64550,AT1G64140 NA Os04g0640900 protein,Disease resistance protein-like (Os01g0621900 protein) (cDNA clone:J013038F15, full insert sequence),Os01g0621900 protein (Fragment) A3AXX0,Q9AXB2,A0A0N7KDC3 A3AXX0_ORYSJ,Q9AXB2_ORYSJ,A0A0N7KDC3_ORYSJ Os04g0640900 OsJ_16356 OSNPB_040640900,P0501G01.5-1 Os01g0621900 OsJ_02649 OSNPB_010621900,Os01g0621900 OSNPB_010621900 ENOG411DQ7Y PFP-ALPHA1,PFP-ALPHA2 Q9SYP2,Q9C9K3 PFPA1_ARATH,PFPA2_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 (PFP 1) (6-phosphofructokinase, pyrophosphate dependent 1) (PPi-PFK 1) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 1),Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 (PFP 2) (6-phosphofructokinase, pyrophosphate dependent 2) (PPi-PFK 2) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 2) DISRUPTION PHENOTYPE: Retarded growth and reduced pyrophosphate--fructose 6-phosphate 1-phosphotransferase (PFP) activity. {ECO:0000269|PubMed:19533038}. FUNCTION: Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. {ECO:0000255|HAMAP-Rule:MF_03185, ECO:0000269|PubMed:19533038}.,FUNCTION: Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. {ECO:0000255|HAMAP-Rule:MF_03185}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4. {ECO:0000255|HAMAP-Rule:MF_03185}. ARA:AT1G20950-MONOMER;,ARA:AT1G76550-MONOMER; 67119,67559 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 (PFP 1) (6-phosphofructokinase, pyrophosphate dependent 1) (PPi-PFK 1) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 1),Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 (PFP 2) (6-phosphofructokinase, pyrophosphate dependent 2) (PPi-PFK 2) (Pyrophosphate-dependent 6-phosphofructose-1-kinase 2) cytosol [GO:0005829]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; diphosphate-fructose-6-phosphate 1-phosphotransferase activity [GO:0047334]; metal ion binding [GO:0046872]; photosynthesis [GO:0015979]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to sucrose [GO:0009744],cytosol [GO:0005829]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; diphosphate-fructose-6-phosphate 1-phosphotransferase activity [GO:0047334]; metal ion binding [GO:0046872]; photosynthesis [GO:0015979] TISSUE SPECIFICITY: Expressed in leaves, roots, and flowers (e.g. sepals, petals, stamen and gynoecium). {ECO:0000269|PubMed:17205343}.,TISSUE SPECIFICITY: Expressed in roots and specific parts such as the trichomes of leaves, cotyledon veins, as well as in stamen and gynoecium of flowers. {ECO:0000269|PubMed:17205343}. locus:2037385;,locus:2011671; AT1G20950,AT1G76550 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha (PFP) (6-phosphofructokinase, pyrophosphate dependent) (PPi-PFK) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) Q6ZFT9,Q0DCI1 Q6ZFT9_ORYSJ,Q0DCI1_ORYSJ Os02g0714200 PFP-ALPHA Os02g0714200 OJ1479_B12.23 OsJ_08132 OSNPB_020714200,Os06g0326400 PFP-ALPHA Os06g0326400 OsJ_21179 OSNPB_060326400 FUNCTION: Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. {ECO:0000256|HAMAP-Rule:MF_03185}. ENOG411DQ7Z Q5EAH2,F4KD57 Q5EAH2_ARATH,F4KD57_ARATH At5g45290 (RING/U-box superfamily protein),RING/U-box superfamily protein R-ATH-983168; 60775,60862 At5g45290 (RING/U-box superfamily protein),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2158500; AT5G45290 zinc finger Os05g0389600 protein (cDNA clone:J033047I01, full insert sequence) Q6I5Y1 Q6I5Y1_ORYSJ Os05g0389600 OJ1562_H01.4 OSNPB_050389600 ENOG411E7SF PP2A9,PP2-A10 Q9SA16,F4I2R3 P2A09_ARATH,F4I2R3_ARATH Protein PHLOEM PROTEIN 2-LIKE A9 (AtPP2-A9),Phloem protein 2-A10 20348,20950 Protein PHLOEM PROTEIN 2-LIKE A9 (AtPP2-A9),Phloem protein 2-A10 carbohydrate binding [GO:0030246] locus:2029534;,locus:504956313; AT1G31200,AT1G10155 Phloem protein NA NA NA NA NA NA NA ENOG411EMGR ALA11,ALA10 Q9SAF5,Q9LI83,F4J8U4 ALA11_ARATH,ALA10_ARATH,F4J8U4_ARATH Probable phospholipid-transporting ATPase 11 (AtALA11) (EC 3.6.3.1) (Aminophospholipid flippase 11),Phospholipid-transporting ATPase 10 (AtALA10) (EC 3.6.3.1) (Aminophospholipid flippase 10),Transmembrane protein FUNCTION: Involved in transport of phospholipids. {ECO:0000305|PubMed:11402198}. ARA:AT1G13210-MONOMER;,ARA:AT3G25610-MONOMER; R-ATH-6798695;R-ATH-936837; 3.6.3.1 136584,136279,19879 Probable phospholipid-transporting ATPase 11 (AtALA11) (EC 3.6.3.1) (Aminophospholipid flippase 11),Phospholipid-transporting ATPase 10 (AtALA10) (EC 3.6.3.1) (Aminophospholipid flippase 10),Transmembrane protein Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012]; Golgi vesicle budding [GO:0048194],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012] locus:2031860;,locus:2102345;,locus:2093969; AT1G13210,AT3G25610,AT3G18700 autoinhibited Ca2 ATPase II NA NA NA NA NA NA NA ENOG411EMGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMGT ALA1 P98204 ALA1_ARATH Phospholipid-transporting ATPase 1 (AtALA1) (EC 3.6.3.1) (Aminophospholipid flippase 1) FUNCTION: Involved in transport of phospholipids. Contributes to transmembrane flipping of lipids. Has activity with phosphatidylserine and with a much lower efficiency with phosphatidylethanolamine, but not with phosphatidylcholine. {ECO:0000269|PubMed:11148289}. MISCELLANEOUS: Knockdown mutants are cold sensitive. {ECO:0000269|PubMed:11148289}. ARA:AT5G04930-MONOMER; R-ATH-936837; 3.6.3.1; 3.6.3.1 130329 Phospholipid-transporting ATPase 1 (AtALA1) (EC 3.6.3.1) (Aminophospholipid flippase 1) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012] TISSUE SPECIFICITY: Expressed in roots, flowers, anthers, leaves, vascular tissues and stems. {ECO:0000269|PubMed:11148289}. locus:3355727; AT5G04930 phospholipid-transporting ATPase Os03g0326000 protein (Fragment),Phospholipid-transporting ATPase (EC 3.6.3.1) Q0DS86,Q10M23,A0A0P0V0Z2 Q0DS86_ORYSJ,Q10M23_ORYSJ,A0A0P0V0Z2_ORYSJ Os03g0326000 Os03g0326000 OSNPB_030326000,Os03g0326100 LOC_Os03g20958 OSNPB_030326100,Os01g0277600 OSNPB_010277600 ENOG411EMGK Q8LCS6 Q8LCS6_ARATH Uncharacterized protein At1g07020 16510 Uncharacterized protein At1g07020 locus:2007457; AT1G07020 NA NA NA NA NA NA NA NA ENOG411DUVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit (WD repeat-containing protein 4 homolog) Q94GP6 Q94GP6_ORYSJ OJ1124_H03.17 LOC_Os03g53530 Os03g0746800 OsJ_12553 OSNPB_030746800 FUNCTION: Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. {ECO:0000256|HAMAP-Rule:MF_03056}. ENOG411DUVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mannan endo-14-beta-mannosidase NA NA NA NA NA NA NA ENOG411DUVS SPPA Q9C9C0,A0A1P8AUG2 SPPA1_ARATH,A0A1P8AUG2_ARATH Serine protease SPPA, chloroplastic (EC 3.4.21.-) (Signal peptide peptidase SPPA),Signal peptide peptidase DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have altered response to long-term high-light acclimation conditions compared to wild-type. {ECO:0000269|PubMed:19349419}. Increased non-photochemical quenching; Low anthocyanin levels; No other phenotypes detected-P. Turini-2009 FUNCTION: Serine protease that may be involved in the light-dependent degradation of antenna and photosystem II in chloroplasts. May function during high light acclimation in plastids. {ECO:0000269|PubMed:11443110, ECO:0000269|PubMed:19349419}. ARA:GQT-1982-MONOMER; 3.4.21.- 75095,67527 Serine protease SPPA, chloroplastic (EC 3.4.21.-) (Signal peptide peptidase SPPA),Signal peptide peptidase chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252]; proteolysis [GO:0006508]; signal peptide processing [GO:0006465],integral component of membrane [GO:0016021]; peptidase activity [GO:0008233]; signal peptide processing [GO:0006465] locus:2031526; AT1G73990 protease Os02g0728100 protein (Putative protease IV),Os02g0728100 protein Q6Z329,A0A0P0VNY9 Q6Z329_ORYSJ,A0A0P0VNY9_ORYSJ Os02g0728100 B1121A12.37 OSNPB_020728100,Os02g0728100 OSNPB_020728100 ENOG411DUVP NUP107 Q8L748 NU107_ARATH Nuclear pore complex protein NUP107 (Nucleoporin 107) 125327 Nuclear pore complex protein NUP107 (Nucleoporin 107) nuclear envelope [GO:0005635]; nuclear pore outer ring [GO:0031080]; nucleocytoplasmic transporter activity [GO:0005487]; structural constituent of nuclear pore [GO:0017056]; mRNA export from nucleus [GO:0006406]; posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000973]; protein import into nucleus [GO:0006606]; regulation of transcription, DNA-templated [GO:0006355] locus:2087477; AT3G14120 nuclear pore protein 84 107 Os11g0643700 protein (Fragment) A0A0P0Y588 A0A0P0Y588_ORYSJ Os11g0643700 OSNPB_110643700 ENOG411DUVZ Q9M1R2,Q9LEV2,A0A1I9LNS4 SYPC_ARATH,Q9LEV2_ARATH,A0A1I9LNS4_ARATH Proline--tRNA ligase, cytoplasmic (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS),Uncharacterized protein T30N20_150 (tRNA synthetase-related / tRNA ligase-like protein),Class II aaRS and biotin synthetases superfamily protein FUNCTION: Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). {ECO:0000250|UniProtKB:P16659}. ARA:AT3G62120-MONOMER;,ARA:AT5G10880-MONOMER; 6.1.1.15 60756,34582,59174 Proline--tRNA ligase, cytoplasmic (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS),Uncharacterized protein T30N20_150 (tRNA synthetase-related / tRNA ligase-like protein),Class II aaRS and biotin synthetases superfamily protein aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; cytosol [GO:0005829]; membrane [GO:0016020]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; proline-tRNA ligase activity [GO:0004827]; prolyl-tRNA aminoacylation [GO:0006433],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; proline-tRNA ligase activity [GO:0004827]; prolyl-tRNA aminoacylation [GO:0006433] locus:2098053;,locus:2183770; AT3G62120,AT5G10880 synthetase Bifunctional aminoacyl-tRNA synthetase, putative, expressed (Os12g0443700 protein) (cDNA clone:001-044-H01, full insert sequence) (cDNA clone:J023023E12, full insert sequence),Os12g0443700 protein (Fragment) Q2QS11,A0A0P0Y9S4 Q2QS11_ORYSJ,A0A0P0Y9S4_ORYSJ LOC_Os12g25710 Os12g0443700 OsJ_35987 OSNPB_120443700,Os12g0443700 OSNPB_120443700 ENOG411DUVX Q8LPL7,A0A1P8B4I7,A0A1P8B4J3 Q8LPL7_ARATH,A0A1P8B4I7_ARATH,A0A1P8B4J3_ARATH Adenosine/AMP deaminase family protein (Putative adenosine deaminase),Adenosine/AMP deaminase family protein ARA:AT4G04880-MONOMER; R-ATH-2161541;R-ATH-74217; 39949,33055,43337 Adenosine/AMP deaminase family protein (Putative adenosine deaminase),Adenosine/AMP deaminase family protein adenosine deaminase activity [GO:0004000]; adenosine catabolic process [GO:0006154]; inosine biosynthetic process [GO:0046103],deaminase activity [GO:0019239] locus:2138967; AT4G04880 Adenosine Os07g0661000 protein (Putative adenosine deaminase) (cDNA clone:J023133M21, full insert sequence) Q8H3U7 Q8H3U7_ORYSJ P0496C02.124 Os07g0661000 OSNPB_070661000 ENOG411DUVE MTERF5 F4JVI3 MTEF5_ARATH Transcription termination factor MTERF5, chloroplastic (Mitochondrial transcription termination factor 5) (Protein MTERF DEFECTIVE IN ARABIDOPSIS 1) DISRUPTION PHENOTYPE: Pale-green phenotype, reduced growth and altered structure of chloroplasts. Enhanced osmotic stress tolerance and altered sugar responses during seedling establishment. {ECO:0000269|PubMed:22905186}. FUNCTION: Transcription termination factor required for processing and steady-state levels of plastid transcripts. May play a role in response to abiotic stresses. {ECO:0000269|PubMed:22905186}. 55961 Transcription termination factor MTERF5, chloroplastic (Mitochondrial transcription termination factor 5) (Protein MTERF DEFECTIVE IN ARABIDOPSIS 1) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, stems, flower buds and open flowers. {ECO:0000269|PubMed:22905186}. locus:505006461; AT4G14605 mTERF Mitochondrial transcription termination factor-like protein (Os02g0602400 protein),Os02g0602400 protein (Fragment) Q6K5F5,A0A0P0VLA8 Q6K5F5_ORYSJ,A0A0P0VLA8_ORYSJ Os02g0602400 OJ1669_F01.11 OJ1791_B03.49 OSNPB_020602400,Os02g0602400 OSNPB_020602400 ENOG411DUVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA amino acid NA NA NA NA NA NA NA ENOG411DUVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Os11g0658900 protein (Fragment) A0A0P0Y4X6 A0A0P0Y4X6_ORYSJ Os11g0658900 OSNPB_110658900 ENOG411DUVJ Q0V7T5,F4JTH1,A0A1P8B5N6,F4IRL7,A0A1P8AZT5,F4JTH2,A0A1P8AZS4,A0A1P8AZS6,A0A1P8AZT1,A0A1P8B5N8,F4IRL6 Y1864_ARATH,F4JTH1_ARATH,A0A1P8B5N6_ARATH,F4IRL7_ARATH,A0A1P8AZT5_ARATH,F4JTH2_ARATH,A0A1P8AZS4_ARATH,A0A1P8AZS6_ARATH,A0A1P8AZT1_ARATH,A0A1P8B5N8_ARATH,F4IRL6_ARATH Probable receptor-like protein kinase At1g80640 (EC 2.7.11.1),Protein kinase superfamily protein R-ATH-446652; 2.7.11.1 47373,45841,43695,48333,42496,45971,42333,41233,47737,50913,47901 Probable receptor-like protein kinase At1g80640 (EC 2.7.11.1),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2198998;,locus:2059526;,locus:2116697; AT1G80640,AT4G32000,AT2G25220 receptor-like protein kinase At1g80640-like Os05g0319700 protein (cDNA clone:002-125-A05, full insert sequence),Os02g0182600 protein Q5W6F7,A0A0P0VFL6 Q5W6F7_ORYSJ,A0A0P0VFL6_ORYSJ Os05g0319700 OSJNBb0006B22.5 OSJNBb0059K16.12 OSNPB_050319700,Os02g0182600 OSNPB_020182600 ENOG411DUVI EMB2744 Q9FK93 PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680 (Protein EMBRYO DEFECTIVE 2744) Embryo defective; Globular-D. Meinke-2003 80844 Pentatricopeptide repeat-containing protein At5g39680 (Protein EMBRYO DEFECTIVE 2744) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2164880; AT5G39680 Pentatricopeptide repeat-containing protein Os05g0572900 protein (cDNA clone:J033121I12, full insert sequence) Q65XK6 Q65XK6_ORYSJ Os05g0572900 Os05g0572900 OJ1735_C10.12 OSNPB_050572900 ENOG411DUV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class I (C) catalytic domain NA NA NA NA NA NA NA ENOG411DUV1 CCD4 O49675 CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14.99.-) (AtNCED4) Double mutants were indistinguishable from bps1 single mutants. FUNCTION: May be involved in carotenoid cleavage. {ECO:0000250}. ARA:AT4G19170-MONOMER; 1.14.99.- 65602 Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14.99.-) (AtNCED4) chloroplast [GO:0009507]; plastoglobule [GO:0010287]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702] locus:2134796; AT4G19170 carotenoid cleavage dioxygenase 4 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic (OsNCED2) (EC 1.13.11.51),9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic (OsNCED1) (EC 1.13.11.51),Os10g0170700 protein Q5MBR6,Q6YVJ0,A0A0P0XST1 NCED2_ORYSJ,NCED1_ORYSJ,A0A0P0XST1_ORYSJ NCED2 Os12g0435200 LOC_Os12g24800 OsJ_35952,NCED1 Os02g0704000 LOC_Os02g47510 P0724B10.24,Os10g0170700 OSNPB_100170700 FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. {ECO:0000250|UniProtKB:O24592}. ENOG411DUV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os09g0328600 protein (Fragment) A0A0P0XLS8 A0A0P0XLS8_ORYSJ Os09g0328600 OSNPB_090328600 ENOG411DUV8 FIP2 Q9SE95,F4K1X9 FIP2_ARATH,F4K1X9_ARATH FH protein interacting protein FIP2 (BTB/POZ domain-containing protein At5g55000),Potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 32828,32102 FH protein interacting protein FIP2 (BTB/POZ domain-containing protein At5g55000),Potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein protein homooligomerization [GO:0051260]; protein ubiquitination [GO:0016567],protein homooligomerization [GO:0051260] TISSUE SPECIFICITY: Expressed in all tissues but preferentially in roots and flowers. {ECO:0000269|PubMed:10929945}. locus:2160230; AT5G55000 FH protein interacting protein K+ channel tetramerisation domain containing protein, expressed (Os03g0157500 protein) (Putative FH protein interacting protein FIP2),Os10g0438000 protein (Potassium channel tetramerisation domain-containing protein, putative, expressed) Q8LMQ6,Q7XE45 Q8LMQ6_ORYSJ,Q7XE45_ORYSJ Os03g0157500 LOC_Os03g06160 Os03g0157500 OSJNBa0011L14.5 OSNPB_030157500,Os10g0438000 LOC_Os10g30190 Os10g0438000 OSNPB_100438000 ENOG411EHF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHF8 AGP2,AGP7,AGP4 Q9SJY7,Q8LG54,Q9ZT16 AGP2_ARATH,AGP7_ARATH,AGP4_ARATH Classical arabinogalactan protein 2,Classical arabinogalactan protein 7,Classical arabinogalactan protein 4 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 12582,12510,12803 Classical arabinogalactan protein 2,Classical arabinogalactan protein 7,Classical arabinogalactan protein 4 anchored component of membrane [GO:0031225]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; synergid death [GO:0010198] TISSUE SPECIFICITY: Highly expressed in roots, flowers and leaves. {ECO:0000269|PubMed:11006345}. locus:2041223;,locus:2168220;,locus:2142524; AT2G22470,AT5G65390,AT5G10430 NA NA NA NA NA NA NA NA ENOG411EHF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region NA NA NA NA NA NA NA ENOG411EHF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain Os10g0327400 protein (Putative membrane spanning protein),Os10g0182200 protein Q7G718,A0A0P0XTB6 Q7G718_ORYSJ,A0A0P0XTB6_ORYSJ OSJNBa0073L20.7 Os10g0327400 LOC_Os10g18010 OsJ_31075 OSJNBa0093I09.28 OSNPB_100327400,Os10g0182200 OSNPB_100182200 ENOG411EHFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1) S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3 phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex cyclin NA NA NA NA NA NA NA ENOG411EHFK UQI3,MRO11.12,MRO11.13 Q9FF98,Q9FF96,Q9FF97,O48704,Q9MAK7,F4KEB4,B3H438 Q9FF98_ARATH,Q9FF96_ARATH,Q9FF97_ARATH,O48704_ARATH,Q9MAK7_ARATH,F4KEB4_ARATH,B3H438_ARATH AT5g23820/MRO11_14 (MD-2-related lipid recognition domain-containing protein) (Putative ubiquitin-interacting factor 3a),MD-2-related lipid recognition domain-containing protein,MD-2-related lipid recognition domain-containing protein (Uncharacterized protein At5g23830),At2g26370 (MD-2-related lipid recognition domain-containing protein) (Uncharacterized protein At2g26370),At1g45015 (F27F5.10) (MD-2-related lipid recognition domain-containing protein) FUNCTION: May be involved in herbivory-mediated responses. May play a role in herbivory-associated molecular pattern (HAMP) recognition. May function is jasmonate (JA) signaling in response to HAMP (PubMed:23314818). May play a role in defense response against the pathogens Altenaria brassicicola and Pseudomonas syringae (PubMed:23903439). {ECO:0000269|PubMed:23314818, ECO:0000269|PubMed:23903439}. MISCELLANEOUS: Transcriptionally regulated by NAI1, a transcription activator which mediates the formation of endoplasmic reticulum bodies (ER bodies). ER bodies are rod-shaped ER-derived structures produced by plants of the Brassicales order. {ECO:0000269|PubMed:23903439}. 17908,18466,18089,19016,16766,15584,17829 AT5g23820/MRO11_14 (MD-2-related lipid recognition domain-containing protein) (Putative ubiquitin-interacting factor 3a),MD-2-related lipid recognition domain-containing protein,MD-2-related lipid recognition domain-containing protein (Uncharacterized protein At5g23830),At2g26370 (MD-2-related lipid recognition domain-containing protein) (Uncharacterized protein At2g26370),At1g45015 (F27F5.10) (MD-2-related lipid recognition domain-containing protein) ER body [GO:0010168]; plant-type vacuole [GO:0000325]; vacuole [GO:0005773]; defense response [GO:0006952],intracellular [GO:0005622]; intracellular sterol transport [GO:0032366] locus:2172888;,locus:2172803;,locus:2172788;,locus:2066296;,locus:504956244; AT5G23820,AT5G23840,AT5G23830,AT2G26370,AT1G45015 MD-2-related lipid recognition domain-containing protein NA NA NA NA NA NA NA ENOG411EHFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EHFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DSBA-like thioredoxin domain NA NA NA NA NA NA NA ENOG411EHFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0598750 protein A0A0P0Y3X9 A0A0P0Y3X9_ORYSJ Os11g0598750 OSNPB_110598750 ENOG411EHFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: reductase NA NA NA NA NA NA NA ENOG411EHFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVU9 P94078,A0A1I9LSB0,A0A1I9LSB2,A0A1I9LSB1,B3H6B8 MANA1_ARATH,A0A1I9LSB0_ARATH,A0A1I9LSB2_ARATH,A0A1I9LSB1_ARATH,B3H6B8_ARATH Alpha-mannosidase At3g26720 (EC 3.2.1.24),Alpha-mannosidase (EC 3.2.1.-) FUNCTION: Liberates mannose from p-nitrophenyl-alpha-D-mannoside in vitro. {ECO:0000269|PubMed:16233119}. ARA:AT3G26720-MONOMER; R-ATH-6798695;R-ATH-8853383; 3.2.1.24,3.2.1.- 115220,106521,103971,109563,106461 Alpha-mannosidase At3g26720 (EC 3.2.1.24),Alpha-mannosidase (EC 3.2.1.-) plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872]; mannose metabolic process [GO:0006013]; protein deglycosylation [GO:0006517],alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872]; mannose metabolic process [GO:0006013] locus:2090817; AT3G26720 Glycosyl hydrolases family 38 C-terminal domain Alpha-mannosidase (EC 3.2.1.-),Os11g0525600 protein (Fragment),Alpha-mannosidase (EC 3.2.1.-) (Fragment) Q2R3E0,A0A0P0Y2W5,A0A0P0Y2V3,A0A0P0Y2R8 Q2R3E0_ORYSJ,A0A0P0Y2W5_ORYSJ,A0A0P0Y2V3_ORYSJ,A0A0P0Y2R8_ORYSJ Os11g0525600 LOC_Os11g32260 Os11g0525600 OsJ_34079 OSNPB_110525600,Os11g0525600 OSNPB_110525600 ENOG411E7S0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E0C1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os03g0245500 protein) (cDNA clone:002-118-A07, full insert sequence) Q10P63 Q10P63_ORYSJ Os03g0245500 LOC_Os03g14150 Os03g0245500 OsJ_10119 OSNPB_030245500 ENOG411E1U2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Glycosyltransferase family 14 protein, putative, expressed (Os03g0276900 protein) Q10NA4 Q10NA4_ORYSJ Os03g0276900 LOC_Os03g16890 OSNPB_030276900 ENOG411E1U5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YT521-B-like domain Os04g0129300 protein (cDNA clone:002-104-G05, full insert sequence),Os05g0105600 protein (cDNA clone:J023026D10, full insert sequence) Q0JF83,Q75M14 Q0JF83_ORYSJ,Q75M14_ORYSJ Os04g0129300 Os04g0129300 OSNPB_040129300,Os05g0105600 Os05g0105600 OsJ_16814 OSJNBb0035J08.8 OSNPB_050105600 P0668H12.23 ENOG411EBUX NAC13 F4IED2,A0A1P8AVU3 NAC13_ARATH,A0A1P8AVU3_ARATH NAC domain-containing protein 13 (ANAC013) (Protein NTM1-like 1),NAC domain protein 13 FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}. 59322,63665 NAC domain-containing protein 13 (ANAC013) (Protein NTM1-like 1),NAC domain protein 13 cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; mitochondria-nucleus signaling pathway [GO:0031930]; positive regulation of cellular response to oxidative stress [GO:1900409]; response to red light [GO:0010114]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. locus:2037925; AT1G32870 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EDZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0468600 protein (cDNA clone:006-303-A07, full insert sequence),OSJNBa0016O02.14 protein (Os04g0468600 protein) (cDNA clone:001-204-E02, full insert sequence) (cDNA clone:006-206-F09, full insert sequence) (cDNA clone:J033097L18, full insert sequence),Os04g0468600 protein (Fragment) B7E663,Q7XJV6,A0A0P0WBA3 B7E663_ORYSJ,Q7XJV6_ORYSJ,A0A0P0WBA3_ORYSJ Os04g0468600 OSNPB_040468600,Os04g0468600 Os04g0468600 OsJ_15119 OSJNBa0016O02.14 OSNPB_040468600 ENOG411E5FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0180700 protein (cDNA, clone: J100062K04, full insert sequence),Os05g0321600 protein Q5KQK0,A0A0P0WKP9 Q5KQK0_ORYSJ,A0A0P0WKP9_ORYSJ Os05g0180700 Os05g0180700 OsJ_17345 OSNPB_050180700 P0453H11.7,Os05g0321600 OSNPB_050321600 ENOG411E5FH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0262900 protein,Os11g0102400 protein (Os12g0102000 protein) Q9LDY4,A0A0P0Y5V9 Q9LDY4_ORYSJ,A0A0P0Y5V9_ORYSJ Os01g0262900 OSNPB_010262900 P0453A06.2 P0469E09.28,Os12g0102000 Os11g0102400 OSNPB_110102400 OSNPB_120102000 ENOG411E5FI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os05g0202600 protein (Fragment) A0A0P0WJ22 A0A0P0WJ22_ORYSJ Os05g0202600 OSNPB_050202600 ENOG411E5FJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flowering-promoting factor 1-like protein 5 (FPF1-like protein 5),Os03g0346200 protein A3BNA1,A0A0P0VXC9 FLP5_ORYSJ,A0A0P0VXC9_ORYSJ Os07g0671000 LOC_Os07g47450 OsJ_25526 P0470D12.115,Os03g0346200 OSNPB_030346200 ENOG411E5FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411E5FD Q9LZF2 Q9LZF2_ARATH Acylphosphatase (EC 3.6.1.7) ARA:AT5G03370-MONOMER; 3.6.1.7 18888 Acylphosphatase (EC 3.6.1.7) acylphosphatase activity [GO:0003998] locus:2142599; AT5G03370 acylphosphatase Acylphosphatase (EC 3.6.1.7) Q5Z6P5 Q5Z6P5_ORYSJ Os06g0264700 Os06g0264700 OJ1001_B06.9 OSJNBa0037N01.56 OSNPB_060264700 ENOG411E5FE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411E5FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5FG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dehydration-responsive element-binding protein 3-like NA NA NA NA NA NA NA ENOG411E5FA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os02g0534700 protein Q6EPX2 Q6EPX2_ORYSJ Os02g0534700 B1136H02.19 OJ1112_G07.6 OsJ_07015 OSNPB_020534700 ENOG411E5FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5FC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI NA NA NA NA NA NA NA ENOG411DS82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) Os06g0136900 protein (Putative AT-hook protein 2) (cDNA clone:002-127-E03, full insert sequence) Q5VQ11 Q5VQ11_ORYSJ Os06g0136900 OSNPB_060136900 P0548D03.27 ENOG411E5FX F21O3.18 Q94AG1,Q8L7K5,Q9SRR9,A0A1I9LNZ1,F4JEG0 Q94AG1_ARATH,Q8L7K5_ARATH,Q9SRR9_ARATH,A0A1I9LNZ1_ARATH,F4JEG0_ARATH AT3g07470/F21O3_18,Uncharacterized protein At3g07460,F21O3.18 protein,Uncharacterized protein 18779,19438,17770,17386,30322 AT3g07470/F21O3_18,Uncharacterized protein At3g07460,F21O3.18 protein,Uncharacterized protein vacuole [GO:0005773] locus:2079601;,locus:2079701; AT3G07470,AT3G07460 Protein of unknown function DUF538 Os01g0913100 protein (cDNA clone:J023051C24, full insert sequence),Os09g0357850 protein (Fragment),Os12g0462700 protein (Fragment) Q5N7W9,A0A0P0XM38,A0A0P0Y9W4 Q5N7W9_ORYSJ,A0A0P0XM38_ORYSJ,A0A0P0Y9W4_ORYSJ Os01g0913100 Os01g0913100 OsJ_04515 OSNPB_010913100 P0470A12.38,Os09g0357850 OSNPB_090357850,Os12g0462700 OSNPB_120462700 ENOG411E5FY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0832150 protein (RING zinc finger protein-like) Q6K966 Q6K966_ORYSJ OJ1149_C12.20 Os02g0832150 OSNPB_020832150 ENOG411E5FZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early nodulin-like protein NA NA NA NA NA NA NA ENOG411E5FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0182300 protein (cDNA clone:001-107-F11, full insert sequence) Q5VR88 Q5VR88_ORYSJ Os01g0182300 OsJ_00638 OSNPB_010182300 P0666G04.24 ENOG411E5FU F15N18_190 Q9LYD2 Q9LYD2_ARATH At5g11600 (Uncharacterized protein F15N18_190) 26577 At5g11600 (Uncharacterized protein F15N18_190) locus:2144301; AT5G11600 NA Os05g0596200 protein (cDNA clone:002-140-D08, full insert sequence),Os05g0596200 protein (Fragment),Os05g0596200 protein (cDNA clone:001-104-D04, full insert sequence) Q5TKF1,Q0DFE0,B7E7K4 Q5TKF1_ORYSJ,Q0DFE0_ORYSJ,B7E7K4_ORYSJ Os05g0596200 OsJ_29468 OSJNBa0030I14.15 OSJNBb0086G17.6 OSNPB_050596200,Os05g0596200 Os05g0596200 OSNPB_050596200,Os05g0596200 OSNPB_050596200 ENOG411E5FV O65448 O65448_ARATH At4g22000 (Tyrosine sulfotransferase-like protein) (Uncharacterized protein AT4g22000) (Uncharacterized protein At4g22000; F1N20.100) 15455 At4g22000 (Tyrosine sulfotransferase-like protein) (Uncharacterized protein AT4g22000) (Uncharacterized protein At4g22000; F1N20.100) transferase activity [GO:0016740] locus:2120638; AT4G22000 NA Os05g0114600 protein B9FKC1 B9FKC1_ORYSJ Os05g0114600 OsJ_16884 OSNPB_050114600 ENOG411E5FW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5FP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis phospholipase-like protein (PEARLI 4) NA NA NA NA NA NA NA ENOG411E5FQ Q84TG0,A0A1P8BA86,F4KCF8 Q84TG0_ARATH,A0A1P8BA86_ARATH,F4KCF8_ARATH Argininosuccinate lyase (At5g02580) (Uncharacterized protein At5g02580),Argininosuccinate lyase 10775,10172,7618 Argininosuccinate lyase (At5g02580) (Uncharacterized protein At5g02580),Argininosuccinate lyase lyase activity [GO:0016829] locus:2181838; AT5G02580 plant-specific domain TIGR01589 family protein expressed Os05g0462000 protein Q6L4Z7 Q6L4Z7_ORYSJ Os05g0462000 OJ1281_H05.17 OJ1525_A02.4 OsJ_18824 OSNPB_050462000 ENOG411E5FR Q2HIG9 Q2HIG9_ARATH At5g59000 (RING/FYVE/PHD zinc finger superfamily protein) 25844 At5g59000 (RING/FYVE/PHD zinc finger superfamily protein) integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2154523; AT5G59000 RINGv NA NA NA NA NA NA NA ENOG411E5FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIB/MDM2 domain Os12g0507500 protein A0A0P0YAG3 A0A0P0YAG3_ORYSJ Os12g0507500 OSNPB_120507500 ENOG411E5F8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0467950 protein A0A0P0WB87 A0A0P0WB87_ORYSJ Os04g0467950 OSNPB_040467950 ENOG411E5F9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os05g0162800 protein A0A0P0WIG3 A0A0P0WIG3_ORYSJ Os05g0162800 OSNPB_050162800 ENOG411E5F4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E5F5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oleosin Os06g0473800 protein Q0DC80 Q0DC80_ORYSJ Os06g0473800 Os06g0473800 OSNPB_060473800 ENOG411E5F6 GASA13 A8MR46 GASAD_ARATH Gibberellin-regulated protein 13 (GAST1 protein homolog 13) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 11373 Gibberellin-regulated protein 13 (GAST1 protein homolog 13) extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740] locus:4010713737; AT3G10185 Gibberellin regulated protein Os09g0414900 protein (Putative gibberellin-induced protein 1) (cDNA clone:001-021-H09, full insert sequence) Q6ER17 Q6ER17_ORYSJ Os09g0414900 Os09g0414900 OSNPB_090414900 P0707C02.15 ENOG411E5F7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411E5F0 Q9FH00 Q9FH00_ARATH At5g42290 (Transcription activator-like protein) 12429 At5g42290 (Transcription activator-like protein) locus:2157587; AT5G42290 NA Expressed protein (Os03g0133100 protein) (cDNA clone:001-118-C12, full insert sequence) (cDNA clone:002-156-H10, full insert sequence) Q10S64 Q10S64_ORYSJ Os03g0133100 LOC_Os03g04080 Os03g0133100 OsJ_30066 OSNPB_030133100 ENOG411E5F1 HIPP28 F4IC29 HIP28_ARATH Heavy metal-associated isoprenylated plant protein 28 (AtHIP28) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 17900 Heavy metal-associated isoprenylated plant protein 28 (AtHIP28) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2202265; AT1G06330 Heavy-metal-associated domain Copper-binding protein-like (Os01g0758000 protein) Q5JLS9 Q5JLS9_ORYSJ Os01g0758000 B1131G08.6 OsJ_03513 OSNPB_010758000 ENOG411E5F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF543) Expressed protein (Os03g0840900 protein) (cDNA, clone: J100070J19, full insert sequence) Q6AVR1 Q6AVR1_ORYSJ Os03g0840900 LOC_Os03g62420 Os03g0840900 OSJNBa0075M12.11 OSNPB_030840900 ENOG411E5F3 Q9SV22 Q9SV22_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis-related protein homolog) 20931 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis-related protein homolog) extracellular region [GO:0005576] locus:2125244; AT4G31470 Pathogenesis-related protein NA NA NA NA NA NA NA ENOG411E79R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DS8J OS9 Q8GWH3 OS9_ARATH Protein OS-9 homolog (AtOS9) (Protein EMS-MUTAGENIZED BRI1 SUPPRESSOR 6) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have enhanced sensitivity to salt stress. {ECO:0000269|PubMed:22328055}. FUNCTION: Lectin which functions in endoplasmic reticulum (ER) quality control and ER-associated degradation (ERAD). May bind terminally misfolded non-glycosylated proteins as well as improperly folded glycoproteins, retain them in the ER, and possibly transfer them to the ubiquitination machinery and promote their degradation. Targets the misfolded LRR receptor kinase BRI1 and the misfolded receptor-like kinase EFR. {ECO:0000269|PubMed:22328055, ECO:0000269|PubMed:22516478}. R-ATH-382556;R-ATH-5358346;R-ATH-901032; 32170 Protein OS-9 homolog (AtOS9) (Protein EMS-MUTAGENIZED BRI1 SUPPRESSOR 6) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; carbohydrate binding [GO:0030246]; response to salt stress [GO:0009651]; retrograde protein transport, ER to cytosol [GO:0030970]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2150361; AT5G35080 Glucosidase II beta subunit-like protein Protein OS-9 homolog (OsOS9),Os06g0644800 protein Q67WM9,A0A0P0WZ99 OS9_ORYSJ,A0A0P0WZ99_ORYSJ OS9 Os06g0644800 LOC_Os06g43710 OsJ_22141 P0017B12.18-1,Os06g0644800 OSNPB_060644800 FUNCTION: Lectin which functions in endoplasmic reticulum (ER) quality control and ER-associated degradation (ERAD). May bind terminally misfolded non-glycosylated proteins as well as improperly folded glycoproteins, retain them in the ER, and possibly transfer them to the ubiquitination machinery and promote their degradation. {ECO:0000250|UniProtKB:Q8GWH3}. ENOG411DS8B AXY4L,MSN9.8 Q9LRS2,F4KHA3 TBL22_ARATH,F4KHA3_ARATH Protein ALTERED XYLOGLUCAN 4-like (Protein trichome birefringence-like 22),Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein DISRUPTION PHENOTYPE: No visible phenotype. Loss of O-acetylated xyloglucan oligosaccharides in seeds, but no effect on xyloglucan O-acetylation in roots and rosette leaves. {ECO:0000269|PubMed:22086088}. FUNCTION: Involved in xyloglucan specific O-acetylation in seeds. {ECO:0000269|PubMed:20657172, ECO:0000269|PubMed:22086088}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 47973,7175 Protein ALTERED XYLOGLUCAN 4-like (Protein trichome birefringence-like 22),Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; xyloglucan metabolic process [GO:0010411],Golgi apparatus [GO:0005794]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2091388;,locus:2173787; AT3G28150,AT5G40180 Pfam:DUF231 Leaf senescence protein-like (Os06g0234300 protein),Os06g0234400 protein,Os04g0465432 protein,Os06g0234600 protein (Fragment) Q67VA1,A0A0P0WUJ3,A0A0P0WBE1,A0A0P0WV15 Q67VA1_ORYSJ,A0A0P0WUJ3_ORYSJ,A0A0P0WBE1_ORYSJ,A0A0P0WV15_ORYSJ Os06g0234300 OSJNBa0080E19.9 OSJNBb0061B07.24 OSNPB_060234300,Os06g0234400 OSNPB_060234400,Os04g0465432 OSNPB_040465432,Os06g0234600 OSNPB_060234600 ENOG411DS8Y BCHB F4I9T0,A0A1P8AUM6,A0A1P8AUL9 BCHB_ARATH,A0A1P8AUM6_ARATH,A0A1P8AUL9_ARATH BEACH domain-containing protein B (BEACH-domain homolog B),Binding protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:25618824}. FUNCTION: May be involved in the suppression of BCHC1 activity. {ECO:0000305|PubMed:25618824}. R-ATH-6798695; 292779,269758,292770 BEACH domain-containing protein B (BEACH-domain homolog B),Binding protein mitochondrion [GO:0005739] locus:2015292; AT1G58230 Beige/BEACH domain Os06g0678650 protein (Fragment),Os02g0162733 protein,Os06g0678651 protein C7J3I8,A0A0P0VF72,A0A0P0X088 C7J3I8_ORYSJ,A0A0P0VF72_ORYSJ,A0A0P0X088_ORYSJ Os06g0678650 Os06g0678650 OSNPB_060678650,Os02g0162733 OSNPB_020162733,Os06g0678651 OSNPB_060678651 ENOG411DS8T KOR Q38890 GUN25_ARATH Endoglucanase 25 (EC 3.2.1.4) (Cellulase homolog OR16pep) (Endo-1,4-beta glucanase 25) (Protein KORRIGAN) (Protein RADIALLY SWOLLEN 2) DISRUPTION PHENOTYPE: Plants are extremely dwarf and show severe abnormal morphology with incomplete cell walls, aberrant cell plates and multinucleated cells. {ECO:0000269|PubMed:9755157}. Little effect of the1-3 on the kor1-1 phenotype. Abnormal seedling morphology, cell plates, and cell walls-N. Chua-2000 FUNCTION: Required for cellulose microfibrils formation. Involved in cell wall assembly during cell elongation and cell plate maturation in cytokinesis. Required for secondary cell wall formation in the developing xylem. May cycle through different intracellular compartments, including plasma membrane. {ECO:0000269|PubMed:10899980, ECO:0000269|PubMed:11351091, ECO:0000269|PubMed:14871312, ECO:0000269|PubMed:16284310, ECO:0000269|PubMed:9755157}. MetaCyc:MONOMER-2367; 3.2.1.4 69191 Endoglucanase 25 (EC 3.2.1.4) (Cellulase homolog OR16pep) (Endo-1,4-beta glucanase 25) (Protein KORRIGAN) (Protein RADIALLY SWOLLEN 2) cell plate [GO:0009504]; early endosome [GO:0005769]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; cellulose catabolic process [GO:0030245]; cortical microtubule organization [GO:0043622]; hyperosmotic salinity response [GO:0042538]; response to cytokinin [GO:0009735]; shoot system development [GO:0048367]; unidimensional cell growth [GO:0009826] DEVELOPMENTAL STAGE: Expressed during hypocotyl elongation in the dark. {ECO:0000269|PubMed:9755157}. TISSUE SPECIFICITY: Highly expressed in roots and stems, at intermediate levels in leaves and flowers, and at lower levels in siliques. Expressed in xylem (at protein level). {ECO:0000269|PubMed:10899980, ECO:0000269|PubMed:14871312, ECO:0000269|PubMed:9755157}. locus:2157022; AT5G49720 Endoglucanase Endoglucanase 9 (EC 3.2.1.4) (Endo-1,4-beta glucanase 9) (OsCel9D) (OsGLU1),Endoglucanase 10 (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) (OsGLU2),Endoglucanase (EC 3.2.1.4) P0C1U4,Q84R49,A0A0P0W2P0 GUN9_ORYSJ,GUN10_ORYSJ,A0A0P0W2P0_ORYSJ GLU1 Os03g0329500 LOC_Os03g21210,GLU2 Os03g0736300 LOC_Os03g52630 OsJ_12485 OSJNBb0016H12.13,Os03g0736300 OSNPB_030736300 DISRUPTION PHENOTYPE: Plants are dwarf with reduction in cell elongation and decrease in cellulose content. {ECO:0000269|PubMed:16463105}. FUNCTION: Involved in cell wall assembly during cell elongation. {ECO:0000269|PubMed:16463105}. ENOG411DSG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nucleoside diphosphate kinase Nucleoside diphosphate kinase (EC 2.7.4.6),Os12g0548300 protein (Fragment),Nucleoside diphosphate kinase (EC 2.7.4.6) (Fragment) Q0IMS5,A0A0P0YB50,A0A0P0YB67 Q0IMS5_ORYSJ,A0A0P0YB50_ORYSJ,A0A0P0YB67_ORYSJ Os12g0548300 LOC_Os12g36194 Os12g0548300 OSNPB_120548300,Os12g0548300 OSNPB_120548300 ENOG411DSG3 RFS2,RFS1,RFS6,DIN10,SIP2 Q94A08,Q84VX0,Q8RX87,F4K470,F4J3E6 RFS2_ARATH,RFS1_ARATH,RFS6_ARATH,F4K470_ARATH,F4J3E6_ARATH Probable galactinol--sucrose galactosyltransferase 2 (EC 2.4.1.82) (Protein SEED IMBIBITION 2) (Raffinose synthase 2),Probable galactinol--sucrose galactosyltransferase 1 (EC 2.4.1.82) (Protein SEED IMBIBITION 1) (Raffinose synthase 1),Probable galactinol--sucrose galactosyltransferase 6 (EC 2.4.1.82) (Protein DARK INDUCIBLE 10) (Raffinose synthase 6),Raffinose synthase family protein,Seed imbibition 2 FUNCTION: Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers (By similarity). {ECO:0000250}. ARA:AT3G57520-MONOMER;MetaCyc:AT3G57520-MONOMER;,ARA:AT1G55740-MONOMER;,ARA:AT5G20250-MONOMER; 2.4.1.82; 2.4.1.82 85143,83477,83116,94216,62521 Probable galactinol--sucrose galactosyltransferase 2 (EC 2.4.1.82) (Protein SEED IMBIBITION 2) (Raffinose synthase 2),Probable galactinol--sucrose galactosyltransferase 1 (EC 2.4.1.82) (Protein SEED IMBIBITION 1) (Raffinose synthase 1),Probable galactinol--sucrose galactosyltransferase 6 (EC 2.4.1.82) (Protein DARK INDUCIBLE 10) (Raffinose synthase 6),Raffinose synthase family protein,Seed imbibition 2 plasmodesma [GO:0009506]; raffinose alpha-galactosidase activity [GO:0052692]; transferase activity, transferring glycosyl groups [GO:0016757]; raffinose catabolic process [GO:0034484]; response to karrikin [GO:0080167]; response to oxidative stress [GO:0006979],galactinol-sucrose galactosyltransferase activity [GO:0047274]; carbohydrate metabolic process [GO:0005975],chloroplast [GO:0009507]; plasmodesma [GO:0009506]; catalytic activity [GO:0003824]; mRNA binding [GO:0003729]; response to cold [GO:0009409]; response to karrikin [GO:0080167]; response to oxidative stress [GO:0006979],catalytic activity [GO:0003824] DEVELOPMENTAL STAGE: Expressed in 24 hours imbibed seeds and during leaf senescence. {ECO:0000269|PubMed:11240919}. locus:2103488;,locus:2020452;,locus:2149284; AT3G57520,AT1G55740,AT5G20250 galactinol--sucrose galactosyltransferase Os12g0555400 protein (Fragment),Os07g0209100 protein (Putative Sip1 protein),Alkaline alpha-galactosidase (Os08g0495800 protein) (Putative alkaline alpha-galactosidase seed imbibition protein),Os08g0495800 protein (Putative alkaline alpha-galactosidase seed imbibition protein),Os03g0808900 protein (Putative raffinose synthase or seed imbibition protein) (Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed) (cDNA clone:J013001N01, full insert sequence),Os08g0350200 protein,Os11g0435500 protein,Os06g0172800 protein (Fragment) Q0IMP9,Q6ZLJ9,Q8W2G5,Q6Z5C3,Q6ATP6,A0A0P0XEU5,A0A0P0Y1U8,A0A0P0WT49 Q0IMP9_ORYSJ,Q6ZLJ9_ORYSJ,Q8W2G5_ORYSJ,Q6Z5C3_ORYSJ,Q6ATP6_ORYSJ,A0A0P0XEU5_ORYSJ,A0A0P0Y1U8_ORYSJ,A0A0P0WT49_ORYSJ Os12g0555400 Os12g0555400 OSNPB_120555400,Os07g0209100 Os07g0209100 OJ1136_A05.22 OSNPB_070209100,Os08g0495800 B1142B04.25-2 OSNPB_080495800,B1142B04.25-1 Os08g0495800 OsJ_27794 OSNPB_080495800,OSJNBa0028F23.23 Os03g0808900 LOC_Os03g59430 OSNPB_030808900,Os08g0350200 OSNPB_080350200,Os11g0435500 OSNPB_110435500,Os06g0172800 OSNPB_060172800 ENOG411DSGH CGLD27 Q9FN15 Q9FN15_ARATH DUF1230 family protein (DUF1230) (Gb|AAC18972.1) (Uncharacterized protein At5g67370) cgld27 mutant shows a stronger growth defect compared to wild type in low Fe (1 µM Fe) conditions. Root length of cgld27 under low Fe conditions is much smaller and the weight is almost half compared to wild type. The phenotype is exacerbated in alkaline soil FUNCTION: Required for growth in low iron conditions. {ECO:0000269|PubMed:23043051}. 36114 DUF1230 family protein (DUF1230) (Gb|AAC18972.1) (Uncharacterized protein At5g67370) integral component of membrane [GO:0016021] locus:2158197; AT5G67370 Protein of unknown function (DUF1230) Expressed protein (Os03g0439700 protein) Q10J01 Q10J01_ORYSJ Os03g0439700 LOC_Os03g32490 Os03g0439700 OsJ_11404 OSNPB_030439700 ENOG411DSGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0349800 protein (Putative cytochrome P450) (cDNA clone:J023019H16, full insert sequence) Q8LQ77 Q8LQ77_ORYSJ Os01g0349800 Os01g0349800 B1051E10.30 OsJ_01687 OSNPB_010349800 ENOG411DSGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family Os03g0254200 protein (Fragment) A0A0P0VVP5 A0A0P0VVP5_ORYSJ Os03g0254200 OSNPB_030254200 ENOG411DSGD A0A1P8AMY4,F4HYH4,F4HYH5 A0A1P8AMY4_ARATH,F4HYH4_ARATH,F4HYH5_ARATH Outer arm dynein light chain 1 protein 115685,121026,119745 Outer arm dynein light chain 1 protein locus:2198065; AT1G48540 Inherit from KOG: serine threonine kinase 11 interacting protein NA NA NA NA NA NA NA ENOG411DSGZ TPR2 F4I456 F4I456_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 40510 Tetratricopeptide repeat (TPR)-like superfamily protein Hsp90 protein binding [GO:0051879] locus:2020225; AT1G04130 tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DSGS Q9LFQ4 PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial 65947 Pentatricopeptide repeat-containing protein At5g15010, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2147830; AT5G15010 Pentatricopeptide repeat-containing protein Os01g0816000 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os04g0592550 protein Q5N752,A0A0P0WE57 Q5N752_ORYSJ,A0A0P0WE57_ORYSJ Os01g0816000 OsJ_03862 OSJNBa0085D07.43 OSNPB_010816000,Os04g0592550 OSNPB_040592550 ENOG411DSGP EYA O82162 O82162_ARATH At2g35320/T4C15.1 (EYA-like protein) (Eyes absent-like protein) (Similar to eyes absent protein) FUNCTION: Possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro (PubMed:15641802). Possesses phosphatase activity toward several phosphotyrosine-containing peptides in vitro, with low peptide substrate specificity (PubMed:18759246). {ECO:0000269|PubMed:15641802, ECO:0000269|PubMed:18759246}. R-ATH-5693565; 35258 At2g35320/T4C15.1 (EYA-like protein) (Eyes absent-like protein) (Similar to eyes absent protein) nucleus [GO:0005634]; protein tyrosine phosphatase activity, metal-dependent [GO:0030946]; anatomical structure development [GO:0048856]; cell differentiation [GO:0030154]; histone dephosphorylation [GO:0016576]; multicellular organism development [GO:0007275]; positive regulation of DNA repair [GO:0045739]; protein dephosphorylation [GO:0006470] locus:2063414; AT2G35320 eyes absent homolog OSEYA1 (Os06g0110100 protein) Q8H684 Q8H684_ORYSJ Os06g0110100 Os06g0110100 OSJNBa0004I20.20 OSNPB_060110100 P0514G12.44 ENOG411EBG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12-oxophytodienoate reductase NA NA NA NA NA NA NA ENOG411EBG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os10g0135400 protein) (cDNA clone:J023035G04, full insert sequence),F-box domain containing protein, expressed (Os10g0135300 protein) (cDNA clone:001-115-H12, full insert sequence) (cDNA clone:J013166C23, full insert sequence),F-box domain containing protein, expressed (Os10g0135500 protein),Os07g0554900 protein (cDNA clone:J023038N21, full insert sequence) (cDNA clone:J023084I19, full insert sequence),Os10g0135966 protein Q33B72,Q33B73,Q7XH24,Q69S52,A0A0P0XRF7 Q33B72_ORYSJ,Q33B73_ORYSJ,Q7XH24_ORYSJ,Q69S52_ORYSJ,A0A0P0XRF7_ORYSJ LOC_Os10g04600 Os10g0135400 OSNPB_100135400,Os10g0135300 LOC_Os10g04590 OsJ_30643 OSNPB_100135300,Os10g0135500 LOC_Os10g04610 Os10g0135500 OSJNBa0013J21.23 OSJNBa0087H07.1 OSNPB_100135500,Os07g0554900 OSJNBa0058I18.2 OSNPB_070554900 P0013G11.37,Os10g0135966 OSNPB_100135966 ENOG411EBG2 IAA10 Q38828 IAA10_ARATH Auxin-responsive protein IAA10 (Indoleacetic acid-induced protein 10) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 27878 Auxin-responsive protein IAA10 (Indoleacetic acid-induced protein 10) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Preferentially expressed in vegetative organs. {ECO:0000269|PubMed:7658471}. locus:2020255; AT1G04100 AUX/IAA family NA NA NA NA NA NA NA ENOG411EBG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3595) NA NA NA NA NA NA NA ENOG411EBG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBG5 MEE55 Q93YS8,A0A1P8B546,F4JT04,Q8VZI4,A0A1P8B559,A0A1P8B544 Q93YS8_ARATH,A0A1P8B546_ARATH,F4JT04_ARATH,Q8VZI4_ARATH,A0A1P8B559_ARATH,A0A1P8B544_ARATH Serinc-domain containing serine and sphingolipid biosynthesis protein (Uncharacterized protein At4g13345),Serinc-domain containing serine and sphingolipid biosynthesis protein,At3g24470/MXP5_4 (Serinc-domain containing serine and sphingolipid biosynthesis protein) R-ATH-977347; 44978,34476,45046,46673,40356,45602 Serinc-domain containing serine and sphingolipid biosynthesis protein (Uncharacterized protein At4g13345),Serinc-domain containing serine and sphingolipid biosynthesis protein,At3g24470/MXP5_4 (Serinc-domain containing serine and sphingolipid biosynthesis protein) integral component of membrane [GO:0016021]; embryo development ending in seed dormancy [GO:0009793],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; L-serine transmembrane transporter activity [GO:0015194] locus:505006454;,locus:2094869; AT4G13345,AT3G24460 Serine incorporator (Serinc) NA NA NA NA NA NA NA ENOG411EBG6 T24C10.2 Q9FZ41 Q9FZ41_ARATH Late embryogenesis abundant (LEA) protein-like protein (Late embryogenesis protein, putative) (T24C10.2 protein) 38394 Late embryogenesis abundant (LEA) protein-like protein (Late embryogenesis protein, putative) (T24C10.2 protein) integral component of membrane [GO:0016021] locus:2011010; AT1G54890 Root cap NA NA NA NA NA NA NA ENOG411EBG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411EBG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EBGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os10g0105850 protein (Putative hsr201 hypersensitivity-related protein),Os10g0105800 protein Q9FWI9,A0A0P0XQS7 Q9FWI9_ORYSJ,A0A0P0XQS7_ORYSJ OSJNBa0065H03.3 Os10g0105850 OsJ_30472 OSNPB_100105850,Os10g0105800 OSNPB_100105800 ENOG411EBGS RLP27 F4IUU1 F4IUU1_ARATH Receptor like protein 27 90060 Receptor like protein 27 locus:2046585; AT2G33060 receptor like protein 27 NA NA NA NA NA NA NA ENOG411EBGT GSTU21 F4IA73 GSTUL_ARATH Glutathione S-transferase U21 (AtGSTU21) (EC 2.5.1.18) (GST class-tau member 21) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25646 Glutathione S-transferase U21 (AtGSTU21) (EC 2.5.1.18) (GST class-tau member 21) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2032025; AT1G78360 glutathione s-transferase tau 21 NA NA NA NA NA NA NA ENOG411EBGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidohydrolase family NA NA NA NA NA NA NA ENOG411EBGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family Os07g0419300 protein (Thaumatin-like protein) (cDNA clone:J023026O22, full insert sequence) Q7F267 Q7F267_ORYSJ OJ1123_B01.120 P0025D09.136 Os07g0419300 OSNPB_070419300 ENOG411EBGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Surface antigen Os11g0116500 protein,Os12g0115950 protein Q0IV31,A0A0P0Y654 Q0IV31_ORYSJ,A0A0P0Y654_ORYSJ Os11g0116500 OSNPB_110116500,Os12g0115950 OSNPB_120115950 ENOG411EBGX BGLU20 Q84WV2 BGL20_ARATH Beta-glucosidase 20 (AtBGLU20) (EC 3.2.1.21) ARA:AT1G75940-MONOMER; R-ATH-189085; 3.2.1.21 61675 Beta-glucosidase 20 (AtBGLU20) (EC 3.2.1.21) endoplasmic reticulum lumen [GO:0005788]; membrane [GO:0016020]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657] locus:2204345; AT1G75940 Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411EBGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBGZ BHLH129 Q9ZW81,F4IQ66 BH129_ARATH,F4IQ66_ARATH Transcription factor bHLH129 (Basic helix-loop-helix protein 129) (AtbHLH129) (bHLH 129) (Transcription factor EN 73) (bHLH transcription factor bHLH129),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 32431,33803 Transcription factor bHLH129 (Basic helix-loop-helix protein 129) (AtbHLH129) (bHLH 129) (Transcription factor EN 73) (bHLH transcription factor bHLH129),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to abscisic acid stimulus [GO:0071215]; negative regulation of gene expression [GO:0010629]; regulation of transcription, DNA-templated [GO:0006355] locus:2041051; AT2G43140 Transcription factor NA NA NA NA NA NA NA ENOG411EBGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cysteine synthase NA NA NA NA NA NA NA ENOG411EBGB RMA2 P93030 RMA2_ARATH E3 ubiquitin-protein ligase RMA2 (EC 2.3.2.27) (Protein RING membrane-anchor 2) (RING-type E3 ubiquitin transferase RMA2) DISRUPTION PHENOTYPE: No visible phenotype and no effect on drought stress response, probably due to the redundancy with RMA1 and RMA3. {ECO:0000269|PubMed:19234086}. FUNCTION: E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of the auxin-binding protein ERABP1. {ECO:0000269|PubMed:19224217, ECO:0000269|PubMed:20152813}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-382556;R-ATH-901032; 2.3.2.B10; 2.3.2.27 22178 E3 ubiquitin-protein ligase RMA2 (EC 2.3.2.27) (Protein RING membrane-anchor 2) (RING-type E3 ubiquitin transferase RMA2) Derlin-1 retrotranslocation complex [GO:0036513]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ubiquitin-protein transferase activity [GO:0004842]; ER-associated misfolded protein catabolic process [GO:0071712]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] DEVELOPMENTAL STAGE: Expressed during seed development. {ECO:0000269|PubMed:9322769}. TISSUE SPECIFICITY: Barely detected in roots and limited to the root tips. Expressed in leaf hydathodes and in siliques. {ECO:0000269|PubMed:19224217, ECO:0000269|PubMed:9322769}. locus:2123663; AT4G28270 zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EBGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EBGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EBGE FLS2 B2GVM7,A0A1P8BGI0 FLAS2_ARATH,A0A1P8BGI0_ARATH Putative inactive flavonol synthase 2,Flavonol synthase 2 ARA:AT5G63580-MONOMER; 1.14.11.23; 28482,27412 Putative inactive flavonol synthase 2,Flavonol synthase 2 flavonol synthase activity [GO:0045431]; metal ion binding [GO:0046872]; flavonoid biosynthetic process [GO:0009813],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2160564; AT5G63580 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EBGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os01g0379400 protein (cDNA clone:002-173-G08, full insert sequence) (cDNA clone:J033092D18, full insert sequence),Os01g0379400 protein (Fragment) Q5VNR1,A0A0P0V2R9 Q5VNR1_ORYSJ,A0A0P0V2R9_ORYSJ B1150E06.18-1 Os01g0379400 OSNPB_010379400,Os01g0379400 OSNPB_010379400 ENOG411EBGH CRK18 Q8RX80,F4JNH2 CRK18_ARATH,F4JNH2_ARATH Cysteine-rich receptor-like protein kinase 18 (Cysteine-rich RLK18) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 18 2.7.11.- 72799,72001 Cysteine-rich receptor-like protein kinase 18 (Cysteine-rich RLK18) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 18 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] AT4G23260 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EBGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EBGK Q9LT39,Q9LXU5 Q9LT39_ARATH,Q9LXU5_ARATH Leucine-rich repeat (LRR) family protein (Polygalacturonase inhibitor-like protein) (Uncharacterized protein At3g20820),Leucine-rich repeat (LRR) family protein (Putative leucine rich repeat protein) (Uncharacterized protein T24H18_110) 39862,39953 Leucine-rich repeat (LRR) family protein (Polygalacturonase inhibitor-like protein) (Uncharacterized protein At3g20820),Leucine-rich repeat (LRR) family protein (Putative leucine rich repeat protein) (Uncharacterized protein T24H18_110) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; membrane [GO:0016020]; plasmodesma [GO:0009506] locus:2091871;,locus:2182260; AT3G20820,AT5G12940 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EBGM PATL1,PATL2 Q56WK6,Q56ZI2,A0A1P8ANK1 PATL1_ARATH,PATL2_ARATH,A0A1P8ANK1_ARATH Patellin-1,Patellin-2,PATELLIN 2 FUNCTION: Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds to phosphoinositides with a preference for PtdIns(5)P, PtdIns(4,5)P2 and PtdIns(3)P. {ECO:0000269|PubMed:15466235}.,FUNCTION: Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites (By similarity). {ECO:0000250}. MISCELLANEOUS: 'Patella' means 'small plate' in Latin. 64046,76008,72386 Patellin-1,Patellin-2,PATELLIN 2 apoplast [GO:0048046]; chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; lipid binding [GO:0008289]; protease binding [GO:0002020]; cell cycle [GO:0007049]; cell division [GO:0051301]; pollen tube growth [GO:0009860]; transport [GO:0006810],chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; protease binding [GO:0002020]; transporter activity [GO:0005215]; cell cycle [GO:0007049]; cell division [GO:0051301],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; transporter activity [GO:0005215] DEVELOPMENTAL STAGE: Accumulates during flower development (at protein level). {ECO:0000269|PubMed:15466235}. TISSUE SPECIFICITY: Expressed ubiquitously with higher levels in expanding roots and leaves (at protein level). {ECO:0000269|PubMed:15466235}. locus:2207001;,locus:2009502; AT1G72150,AT1G22530 patellin 1 NA NA NA NA NA NA NA ENOG411EBGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) NA NA NA NA NA NA NA ENOG411E869 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E868 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E865 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA organ-specific protein S2-like NA NA NA NA NA NA NA ENOG411E864 ZFP6 Q39265 ZFP6_ARATH Zinc finger protein 6 DISRUPTION PHENOTYPE: Reduced number of trichomes on sepals, cauline leaves, lateral branches and main inflorescence stems. {ECO:0000269|PubMed:23506479}. FUNCTION: Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, ZFP5 and the trichome initiation regulators GL1 and GL3 (PubMed:23506479). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:23506479, ECO:0000269|PubMed:24808098}. MISCELLANEOUS: Seeds over-expressing ZFP6 are insensitive to inhibition of germination by abscisic acid (ABA) (PubMed:24808098). Plants over-expressing ZFP6 show formation of ectopic trichomes on carpels and other inflorescence organs (Probable). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:23506479}. 21414 Zinc finger protein 6 cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; cytokinin-activated signaling pathway [GO:0009736]; gibberellic acid mediated signaling pathway [GO:0009740]; multicellular organism development [GO:0007275]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Highly expressed in roots, mature stem and lateral branches. Expressed at low levels in rosette leaves and siliques. {ECO:0000269|PubMed:23506479}. locus:2019723; AT1G67030 NA NA NA NA NA NA NA NA ENOG411E867 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E866 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0322200 protein) (cDNA clone:001-109-E12, full insert sequence) Q10M60 Q10M60_ORYSJ LOC_Os03g20600 Os03g0322200 OSNPB_030322200 ENOG411E861 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E860 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0169200 protein B9G7P9 B9G7P9_ORYSJ Os10g0169200 OsJ_30841 OSNPB_100169200 ENOG411E862 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0059K02.4 protein (Os04g0649600 protein) (cDNA clone:001-104-D05, full insert sequence) Q7XMQ7 Q7XMQ7_ORYSJ Os04g0649600 OSJNBb0059K02.4 OSNPB_040649600 ENOG411E86M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Invertase pectin methylesterase inhibitor family protein NA NA NA NA NA NA NA ENOG411E86N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E86H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E86K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) Os01g0358100 protein (cDNA clone:001-109-A08, full insert sequence),Os02g0670500 protein (cDNA, clone: J100066I03, full insert sequence),Os01g0357900 protein (cDNA clone:J013123C07, full insert sequence) Q94DK4,Q6ESP9,Q94DK6 Q94DK4_ORYSJ,Q6ESP9_ORYSJ,Q94DK6_ORYSJ Os01g0358100 Os01g0358100 OsJ_01735 OSNPB_010358100 P0025H06.29 P0514H03.8,Os02g0670500 OJ1725_H08.43 OsJ_07881 OSNPB_020670500 P0684A08.29,Os01g0357900 OSNPB_010357900 P0025H06.27 P0514H03.6 ENOG411E86E F8A24.8 Q9SF89 Q9SF89_ARATH F8A24.8 protein (SAUR-like auxin-responsive protein family) 13124 F8A24.8 protein (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2085104; AT3G09870 SAUR family NA NA NA NA NA NA NA ENOG411E86D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5'-nucleotidase C-terminal domain NA NA NA NA NA NA NA ENOG411E86G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0383200 protein A0A0P0WLV6 A0A0P0WLV6_ORYSJ Os05g0383200 OSNPB_050383200 ENOG411E86F Q9SIS7 Q9SIS7_ARATH At2g01870 (Expressed protein) (Transmembrane protein) (Uncharacterized protein At2g01870) 17904 At2g01870 (Expressed protein) (Transmembrane protein) (Uncharacterized protein At2g01870) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2059738; AT2G01870 NA NA NA NA NA NA NA NA ENOG411E86A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0027P08.12 protein (Os04g0445400 protein) Q7XUW8 Q7XUW8_ORYSJ Os04g0445400 OsJ_14942 OSJNBa0027P08.12 OSNPB_040445400 ENOG411E86C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E86B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E86Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E86X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0154600 protein,Os10g0154566 protein A0A0N7KRG2,A0A0P0XSU3 A0A0N7KRG2_ORYSJ,A0A0P0XSU3_ORYSJ Os10g0154600 OSNPB_100154600,Os10g0154566 OSNPB_100154566 ENOG411E86U MTE17.12 Q9FJ69,Q8GXG3 Q9FJ69_ARATH,Q8GXG3_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At5g55410/MTE17_12) 12266,11916 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At5g55410/MTE17_12) locus:2173882; AT5G55410 AAI NA NA NA NA NA NA NA ENOG411E86T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0693400 protein (Fragment) Q0D9X5 Q0D9X5_ORYSJ Os06g0693400 Os06g0693400 OSNPB_060693400 ENOG411E86W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0470150 protein (Fragment) A0A0P0WB93 A0A0P0WB93_ORYSJ Os04g0470150 OSNPB_040470150 ENOG411E86V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA late embryogenesis abundant protein Os01g0314800 protein Q0JN91 Q0JN91_ORYSJ Os01g0314800 Os01g0314800 OsJ_01496 OSNPB_010314800 ENOG411E86Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411E86S F4KA24 F4KA24_ARATH Uncharacterized protein 21264 Uncharacterized protein locus:504955003; AT5G28885 Domain of unknown function DUF223 NA NA NA NA NA NA NA ENOG411E86R TED6 Q8LBX7 Q8LBX7_ARATH At1g43790 (Tracheary element differentiation-related 6) 13007 At1g43790 (Tracheary element differentiation-related 6) integral component of membrane [GO:0016021] locus:2029132; AT1G43790 NA NA NA NA NA NA NA NA ENOG411EE4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411EE4G OCT5 Q9SAK7 OCT5_ARATH Organic cation/carnitine transporter 5 (AtOCT5) FUNCTION: High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations (By similarity). {ECO:0000250}. R-ATH-112311;R-ATH-181430;R-ATH-197264;R-ATH-200425;R-ATH-2161517;R-ATH-442660;R-ATH-549127;R-ATH-561048; 57151 Organic cation/carnitine transporter 5 (AtOCT5) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; organic anion transmembrane transporter activity [GO:0008514]; cellular response to cold [GO:0070417]; cellular response to salt stress [GO:0071472]; cellular response to water deprivation [GO:0042631] TISSUE SPECIFICITY: Mostly expressed in leaves and siliques, and, to a lower extent, in roots, stems and flowers. {ECO:0000269|PubMed:18710496}. locus:2206430; AT1G79410 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EE4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0579100 protein (Fragment),Os07g0531900 protein Q0IS08,Q8GVN4 Q0IS08_ORYSJ,Q8GVN4_ORYSJ Os11g0579100 OSNPB_110579100,P0681F05.136 Os07g0531900 OsJ_24545 OSNPB_070531900 ENOG411EE4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant phosphoribosyltransferase C-terminal NA NA NA NA NA NA NA ENOG411EE4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated ABC transporter G family member 43 (OsABCG43) (Pleiotropic drug resistance protein 5) (OsPDR5),Os02g0318600 protein,Os02g0318500 protein,Os11g0587600 protein,Os07g0667800 protein Q8GU86,C7IYH8,A0A0P0VIB9,A0A0P0Y3Y5,A0A0P0XAS1 AB43G_ORYSJ,C7IYH8_ORYSJ,A0A0P0VIB9_ORYSJ,A0A0P0Y3Y5_ORYSJ,A0A0P0XAS1_ORYSJ ABCG43 PDR5 Os07g0522500 LOC_Os07g33780 OJ1372_D12.114,Os02g0318600 Os02g0318600 OSNPB_020318600,Os02g0318500 OSNPB_020318500,Os11g0587600 OSNPB_110587600,Os07g0667800 OSNPB_070667800 FUNCTION: May be a general defense protein (By similarity). ABC transporter that confers high tolerance to cadmium in yeast (PubMed:21670506). {ECO:0000250, ECO:0000269|PubMed:21670506}. ENOG411EE4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein (Os11g0642600 protein) Q2R0K1 Q2R0K1_ORYSJ Os11g0642600 LOC_Os11g42310 OSNPB_110642600 ENOG411EE4N Q9C6I2,F4I7Z1 FBD1_ARATH,F4I7Z1_ARATH Putative FBD-associated F-box protein At1g50980,FBD-like domain family protein 42440,18977 Putative FBD-associated F-box protein At1g50980,FBD-like domain family protein membrane [GO:0016020] locus:2036416;,locus:504956265; AT1G50980,AT1G51055 f-box family NA NA NA NA NA NA NA ENOG411EE4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: leucine Rich Repeat NBS-LRR disease resistance protein-like (Os01g0536466 protein) Q5JLD4 Q5JLD4_ORYSJ OSJNBa0086A10.25 Os01g0536466 OSNPB_010536466 ENOG411EE4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE4K CLPC2,F9K21.30,HSP93-III Q9SXJ7,Q9M1G2,F4JF64 CLPC2_ARATH,Q9M1G2_ARATH,F4JF64_ARATH Chaperone protein ClpC2, chloroplastic (EC 3.6.1.3) (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 2) (AtClpC) (Casein lytic proteinase C2),ClpC-like protein (Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein),Clp ATPase DISRUPTION PHENOTYPE: No visible phenotype (PubMed:17376159). Clpc1 and clpc2 double mutants are embryo lethal when homozygous (PubMed:17376159). {ECO:0000269|PubMed:17376159}. FUNCTION: Molecular chaperone (PubMed:15304652, PubMed:21737456, PubMed:24599948). May act as a suppressor of FtsH-mediated thylakoid membrane biogenesis and may enhance photoinhibition (PubMed:15304652). Seems not involved in chloroplastic protein import (PubMed:15304652). Probable component of the TIC-associated stromal import motor involved in inner membrane translocation (PubMed:17376159). Has an ATPase activity, but no ADPase activity (PubMed:21737456). Interacts with transit peptides with a positional preference (PubMed:21737456, PubMed:22545953). Localization of the signal sequence at the N-terminal end of a protein seems mandatory for interaction to take place (PubMed:22545953). {ECO:0000269|PubMed:15304652, ECO:0000269|PubMed:17376159, ECO:0000269|PubMed:21737456, ECO:0000269|PubMed:22545953, ECO:0000269|PubMed:24599948}. 3.6.1.3 105739,37346,102242 Chaperone protein ClpC2, chloroplastic (EC 3.6.1.3) (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 2) (AtClpC) (Casein lytic proteinase C2),ClpC-like protein (Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein),Clp ATPase chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; plastid stroma [GO:0009532]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; protein homodimerization activity [GO:0042803]; chloroplast organization [GO:0009658]; protein hexamerization [GO:0034214]; protein import into chloroplast stroma [GO:0045037]; protein metabolic process [GO:0019538],chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein metabolic process [GO:0019538],ATP binding [GO:0005524]; protein metabolic process [GO:0019538] TISSUE SPECIFICITY: Expressed at low levels in roots and inflorescences (PubMed:15659100). Expressed at very low levels in rosette leaves (PubMed:15659100). Expressed in photosynthetic green tissues with high levels in young, developing leaf tissues (PubMed:23898032). {ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:23898032}. locus:2099433;,locus:2085592; AT3G48870,AT3G45450 ATP binding ATPase DNA binding nuclease nucleoside-triphosphatase nucleotide binding protein binding NA NA NA NA NA NA NA ENOG411EE4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411EE4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE4R UGT74C1 Q9SKC1 U74C1_ARATH UDP-glycosyltransferase 74C1 (EC 2.4.1.-) 2.4.1.- 51632 UDP-glycosyltransferase 74C1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2045268; AT2G31790 UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EE4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3D domain NA NA NA NA NA NA NA ENOG411EE4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EE4Q EOL2 Q9LV01 ETOL2_ARATH ETO1-like protein 2 (Ethylene overproducer 1-like protein 2) FUNCTION: Potential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes (By similarity). {ECO:0000250, ECO:0000269|PubMed:18808454}. PATHWAY: Protein modification; protein ubiquitination. 105490 ETO1-like protein 2 (Ethylene overproducer 1-like protein 2) intracellular [GO:0005622]; ethylene-activated signaling pathway [GO:0009873]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Constitutively expressed in green and etiolated seedlings. {ECO:0000269|PubMed:18808454}. AT5G58550 BTB NA NA NA NA NA NA NA ENOG411EE4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mannan synthase NA NA NA NA NA NA NA ENOG411EE4X MQK4.8 Q9FFE7 Q9FFE7_ARATH Gb|AAF32477.1 (NC domain-containing protein-like protein) (Uncharacterized protein At5g16360) 30361 Gb|AAF32477.1 (NC domain-containing protein-like protein) (Uncharacterized protein At5g16360) locus:2171387; AT5G16360 NC domain-containing NA NA NA NA NA NA NA ENOG411EE46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EE47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EE44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EE41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA filament-like plant protein 7-like NA NA NA NA NA NA NA ENOG411DTX4 RID1 F4IE66 PRP22_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) (Protein ROOT INITIATION DEFECTIVE 1) DISRUPTION PHENOTYPE: Defects in female gametophyte development. {ECO:0000269|PubMed:23771891}. FUNCTION: Involved in pre-mRNA splicing. Plays a role during development in processes such as meristem maintenance, leaf morphogenesis and root morphogenesis. {ECO:0000269|PubMed:23771891}. 3.6.4.13 80515 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) (Protein ROOT INITIATION DEFECTIVE 1) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA processing [GO:0006396]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Widely expressed but spatially and temporally regulated during development. {ECO:0000269|PubMed:23771891}. locus:2197965; AT1G26370 RNA helicase Os06g0192500 protein (RNA helicase-like),Os06g0192500 protein (Fragment) Q69TI6,A0A0N7KLP4 Q69TI6_ORYSJ,A0A0N7KLP4_ORYSJ P0698A06.12-1 Os06g0192500 OSJNBa0090D06.52-1 OSNPB_060192500,Os06g0192500 OSNPB_060192500 ENOG411DTX5 PER52,PER68 Q9FLC0,Q9LVL1 PER52_ARATH,PER68_ARATH Peroxidase 52 (Atperox P52) (EC 1.11.1.7) (ATP49),Peroxidase 68 (Atperox P68) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G05340-MONOMER;,ARA:AT5G58400-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34215,35627 Peroxidase 52 (Atperox P52) (EC 1.11.1.7) (ATP49),Peroxidase 68 (Atperox P68) (EC 1.11.1.7) apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; lignin biosynthetic process [GO:0009809]; positive regulation of syringal lignin biosynthetic process [GO:1901430]; response to oxidative stress [GO:0006979]; xylem development [GO:0010089],extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2153529;,locus:2161193; AT5G05340,AT5G58400 peroxidase Peroxidase (EC 1.11.1.7) Q5U1G3,Q5U1F8 Q5U1G3_ORYSJ,Q5U1F8_ORYSJ prx130 Os11g0112400 LOC_Os11g02130 OsJ_32693 OSNPB_110112400,prx135 LOC_Os12g02080 Os12g0112000 OsJ_34981 OSNPB_120112000 ENOG411DTX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0207800 protein (Tetratricopeptide repeat, putative) Q8H061 Q8H061_ORYSJ OSJNBa0014O06.11 Os03g0207800 LOC_Os03g10980 OSNPB_030207800 ENOG411DTX7 Q9SJN2 PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240 56356 Pentatricopeptide repeat-containing protein At2g36240 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2049465; AT2G36240 Pentatricopeptide repeat-containing protein Fertility restorer homologue A-like (Os01g0908800 protein) (p0497A05.20 protein) Q8L519 Q8L519_ORYSJ P0497A05.20 Os01g0908800 B1417F08.40 OsJ_04481 OSNPB_010908800 P0456E05.13 ENOG411DTX0 F28A23.80 Q8RWU1,Q94JY0,A0A1P8AZA0,F4JJY7,Q3E7I4 Q8RWU1_ARATH,Q94JY0_ARATH,A0A1P8AZA0_ARATH,F4JJY7_ARATH,Q3E7I4_ARATH Cyclin delta-3 (Uncharacterized protein At2g23370) (Uncharacterized protein At2g23370/F26B6.2),Cyclin delta-3 38040,36909,32165,43964,26322 Cyclin delta-3 (Uncharacterized protein At2g23370) (Uncharacterized protein At2g23370/F26B6.2),Cyclin delta-3 mitochondrion [GO:0005739],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2046758;,locus:2124226; AT2G23370,AT4G34090 NA Expressed protein (Os03g0109700 protein) (cDNA clone:J023007O11, full insert sequence),Os03g0109700 protein Q10SV7,A0A0N7KGG0 Q10SV7_ORYSJ,A0A0N7KGG0_ORYSJ LOC_Os03g01920 Os03g0109700 OsJ_09123 OSNPB_030109700,Os03g0109700 OSNPB_030109700 ENOG411DTX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial glycoprotein Os01g0143800 protein (cDNA clone:001-038-A12, full insert sequence) (cDNA clone:006-306-C02, full insert sequence) Q9FU74 Q9FU74_ORYSJ Os01g0143800 OSNPB_010143800 P0019D06.39 P0024G09.27 ENOG411DTX2 Q9LVH6 Q9LVH6_ARATH Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase) FUNCTION: Converts alpha-aldose to the beta-anomer. {ECO:0000256|PIRNR:PIRNR005096}. PATHWAY: Carbohydrate metabolism; hexose metabolism. {ECO:0000256|PIRNR:PIRNR005096}. ARA:AT3G17940-MONOMER; 5.1.3.3 37197 Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase) apoplast [GO:0048046]; cytosol [GO:0005829]; aldose 1-epimerase activity [GO:0004034]; carbohydrate binding [GO:0030246]; galactose catabolic process via UDP-galactose [GO:0033499]; glucose metabolic process [GO:0006006] locus:2088555; AT3G17940 Converts alpha-aldose to the beta-anomer. It is active on D-glucose L-arabinose D-xylose D-galactose maltose and lactose (By similarity) Os09g0108600 protein (cDNA clone:001-117-D04, full insert sequence),Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase) B7E8R4,Q33AZ5 B7E8R4_ORYSJ,Q33AZ5_ORYSJ Os09g0108600 OSNPB_090108600,Os10g0155500 LOC_Os10g06720 Os10g0155500 OSNPB_100155500 FUNCTION: Converts alpha-aldose to the beta-anomer. {ECO:0000256|PIRNR:PIRNR005096}. ENOG411DTX3 PLP6 O80959 PLP6_ARATH Patatin-like protein 6 (AtPLP6) (EC 3.1.1.-) (Patatin-related phospholipase A IIIalpha) (pPLAIIIa) (Phospholipase A IIB) (AtPLAIIB) FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Hydrolyzes phospholipids as well as galactolipids. May play a role in disease resistance (By similarity). {ECO:0000250}. ARA:GQT-2643-MONOMER; 3.1.1.- 54495 Patatin-like protein 6 (AtPLP6) (EC 3.1.1.-) (Patatin-related phospholipase A IIIalpha) (pPLAIIIa) (Phospholipase A IIB) (AtPLAIIB) hydrolase activity [GO:0016787]; defense response [GO:0006952]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Highly expressed in siliques and at lower levels in roots and flowers. {ECO:0000269|PubMed:21447788}. locus:2056088; AT2G39220 Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411DTX8 NIFS1,NFS1 O49543,A8MSF1 MNIF1_ARATH,A8MSF1_ARATH Cysteine desulfurase, mitochondrial (EC 2.8.1.7) (NIFS homolog 1) (AtNIFS1) (Protein AtMtNifS),AT5G65720 protein (Nitrogen fixation S (NIFS)-like 1) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:17417719}. Null: No homozygous mutant plants recovered; Knockdown: Dwarf; Increased branching; Scalloped, chlorotic leaves-B. Winkel-2007 FUNCTION: Catalyzes the removal of elemental sulfur from cysteine to produce alanine. Supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. {ECO:0000269|PubMed:16437155, ECO:0000269|PubMed:17417719}. R-ATH-1362409;R-ATH-947581; 2.8.1.6;2.8.1.7; 2.8.1.7 50296,36128 Cysteine desulfurase, mitochondrial (EC 2.8.1.7) (NIFS homolog 1) (AtNIFS1) (Protein AtMtNifS),AT5G65720 protein (Nitrogen fixation S (NIFS)-like 1) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cysteine desulfurase activity [GO:0031071]; iron-sulfur cluster binding [GO:0051536]; pyridoxal phosphate binding [GO:0030170]; zinc ion binding [GO:0008270]; [2Fe-2S] cluster assembly [GO:0044571]; iron-sulfur cluster assembly [GO:0016226],cysteine desulfurase activity [GO:0031071]; pyridoxal phosphate binding [GO:0030170]; [2Fe-2S] cluster assembly [GO:0044571] locus:2169985; AT5G65720 Cysteine desulfurase Os09g0338400 protein (Putative tRNA splicing protein) (cDNA clone:J013050E08, full insert sequence) (cDNA clone:J013108N11, full insert sequence) Q6ERL4 Q6ERL4_ORYSJ Os09g0338400 OJ1118_A10.25 OsJ_28956 OSNPB_090338400 ENOG411DTX9 CYP19-4,CYP20-1 Q8LDP4,Q9SP02 CP19D_ARATH,CP20A_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-4 (PPIase CYP19-4) (EC 5.2.1.8) (Cyclophilin of 19 kDa 4) (Cyclophilin-5) (Rotamase CYP19-4),Peptidyl-prolyl cis-trans isomerase CYP20-1 (PPIase CYP20-1) (EC 5.2.1.8) (Cyclophilin of 20 kDa 1) (Rotamase CYP20-1) (Rotamase cyclophilin-7) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved during embryogenesis and organ development by regulating the folding of EMB30/GNOM, and thus, by modulating its activity. {ECO:0000269|PubMed:10715321}.,FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Seems to be involved in root development. {ECO:0000269|PubMed:10628867}. 5.2.1.8 21534,21961 Peptidyl-prolyl cis-trans isomerase CYP19-4 (PPIase CYP19-4) (EC 5.2.1.8) (Cyclophilin of 19 kDa 4) (Cyclophilin-5) (Rotamase CYP19-4),Peptidyl-prolyl cis-trans isomerase CYP20-1 (PPIase CYP20-1) (EC 5.2.1.8) (Cyclophilin of 20 kDa 1) (Rotamase CYP20-1) (Rotamase cyclophilin-7) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; Golgi stack [GO:0005795]; membrane [GO:0016020]; multivesicular body [GO:0005771]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; root development [GO:0048364] DEVELOPMENTAL STAGE: Mostly expressed in both apical and basal regions in peduncles and stems (including upper roots) before the bolting stage. Later restricted in the apical region. During embryogenesis, accumulates in all cells during globular stage. From the heart stage, more expressed in inner cells than in epidermal cells (at protein level). {ECO:0000269|PubMed:10189705, ECO:0000269|PubMed:10715321}. TISSUE SPECIFICITY: Ubiquitous, mostly in aerial organs (at protein level). {ECO:0000269|PubMed:10189705, ECO:0000269|PubMed:10715321, ECO:0000269|PubMed:15047905}.,TISSUE SPECIFICITY: Ubiquitous, mostly in aerial organs. Higher levels in leaf and buds, and lower levels in seedlings. {ECO:0000269|PubMed:10628867, ECO:0000269|PubMed:15047905}. locus:2045663;,locus:2178863; AT2G29960,AT5G58710 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q5Z9H8,Q5Z9I0,Q5Z9H9 Q5Z9H8_ORYSJ,Q5Z9I0_ORYSJ,Q5Z9H9_ORYSJ P0655A07.5-2 Os06g0708500 P0621D05.45-2 OSNPB_060708500,Os06g0708400 OsJ_22613 OSNPB_060708400 P0621D05.44 P0655A07.4,P0655A07.5-1 P0621D05.45-1 Os06g0708500 OSNPB_060708500 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DTXD PP2C38 Q9LHJ9 P2C38_ARATH Probable protein phosphatase 2C 38 (AtPP2C38) (EC 3.1.3.16) FUNCTION: Involved in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) signaling. Negatively regulates immune responses by controlling the phosphorylation and activation status of BIK1, a central rate-limiting kinase in PTI signaling. Impairs the phosphorylation of the NADPH oxidase RBOHD by BIK1. {ECO:0000269|PubMed:27494702}. 3.1.3.16 42851 Probable protein phosphatase 2C 38 (AtPP2C38) (EC 3.1.3.16) plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; negative regulation of defense response to bacterium [GO:1900425] locus:2091265; AT3G12620 phosphatase 2C Os01g0976700 protein (cDNA clone:J023105D23, full insert sequence) Q5JNC2 Q5JNC2_ORYSJ Os01g0976700 OsJ_04966 OSNPB_010976700 P0020E09.10 ENOG411DTXE Q9FLP7 FB294_ARATH Putative F-box protein At5g55150 40832 Putative F-box protein At5g55150 locus:2161665; AT5G55150 F-box protein F-box domain containing protein, expressed (Os11g0582700 protein),Expressed protein (F-box domain containing protein, expressed) (Os03g0720400 protein) (cDNA clone:J013112B07, full insert sequence),Os06g0542701 protein,F-box domain containing protein, expressed (Os11g0584100 protein) (cDNA clone:002-119-F02, full insert sequence),Os06g0542600 protein,Os11g0584100 protein (Fragment) Q2R220,Q6ASV3,Q5Z6X5,Q2R211,C7J3E3,A0A0P0Y3Z3 Q2R220_ORYSJ,Q6ASV3_ORYSJ,Q5Z6X5_ORYSJ,Q2R211_ORYSJ,C7J3E3_ORYSJ,A0A0P0Y3Z3_ORYSJ Os11g0582700 LOC_Os11g37300 Os11g0582700 OSNPB_110582700,B1377B10.14 LOC_Os03g51090 Os03g0720400 OSNPB_030720400,B1068H08.18 Os06g0542701 OSNPB_060542701,Os11g0584100 LOC_Os11g37390 Os11g0584100 OsJ_34395 OSNPB_110584100,Os06g0542600 Os06g0542600 OSNPB_060542600,Os11g0584100 OSNPB_110584100 ENOG411DTXF NCER3,NCER1,NCER2 F4KHQ8,F4HQM3,Q304B9,A0A1P8APY2,A0A1P8AZR2 NCER3_ARATH,NCER1_ARATH,NCER2_ARATH,A0A1P8APY2_ARATH,A0A1P8AZR2_ARATH Neutral ceramidase 3 (AtNCER3) (N-CDase 3) (NCDase 3) (EC 3.5.1.23) (Acylsphingosine deacylase 3) (N-acylsphingosine amidohydrolase 3),Neutral ceramidase 1 (AtNCER1) (N-CDase 1) (NCDase 1) (EC 3.5.1.23) (Acylsphingosine deacylase 1) (N-acylsphingosine amidohydrolase 1),Neutral ceramidase 2 (AtNCER2) (N-CDase 2) (NCDase 2) (EC 3.5.1.23) (Acylsphingosine deacylase 2) (N-acylsphingosine amidohydrolase 2),Neutral/alkaline non-lysosomal ceramidase DISRUPTION PHENOTYPE: Increased sensitivity to C2-ceramide induced cell death. {ECO:0000269|PubMed:26150824}.,DISRUPTION PHENOTYPE: Increased accumulation of hydroxyceramides. Enhanced sensitivity to oxidative stress induced by methyl viologen. Increased sensitivity to C2-ceramide induced cell death. {ECO:0000269|PubMed:26150824}. FUNCTION: Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid (By similarity). Promotes oxidative stress resistance (PubMed:26150824). {ECO:0000250|UniProtKB:F4HQM3, ECO:0000269|PubMed:26150824}.,FUNCTION: Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. Regulates sphingolipid homeostasis. Promotes oxidative stress resistance. {ECO:0000269|PubMed:26150824}.,FUNCTION: Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. {ECO:0000250|UniProtKB:F4HQM3}. ARA:AT5G58980-MONOMER;,ARA:AT1G07380-MONOMER;,ARA:AT2G38010-MONOMER; R-ATH-1660662; 3.5.1.23 81838,86771,83264,86903,83208 Neutral ceramidase 3 (AtNCER3) (N-CDase 3) (NCDase 3) (EC 3.5.1.23) (Acylsphingosine deacylase 3) (N-acylsphingosine amidohydrolase 3),Neutral ceramidase 1 (AtNCER1) (N-CDase 1) (NCDase 1) (EC 3.5.1.23) (Acylsphingosine deacylase 1) (N-acylsphingosine amidohydrolase 1),Neutral ceramidase 2 (AtNCER2) (N-CDase 2) (NCDase 2) (EC 3.5.1.23) (Acylsphingosine deacylase 2) (N-acylsphingosine amidohydrolase 2),Neutral/alkaline non-lysosomal ceramidase endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; ceramidase activity [GO:0017040]; cellular response to oxidative stress [GO:0034599]; sphingolipid metabolic process [GO:0006665],endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; vacuolar membrane [GO:0005774]; ceramidase activity [GO:0017040]; cellular response to oxidative stress [GO:0034599]; cellular sphingolipid homeostasis [GO:0090156]; sphingolipid metabolic process [GO:0006665],endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plasmodesma [GO:0009506]; ceramidase activity [GO:0017040]; sphingolipid metabolic process [GO:0006665],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Mostly expressed in stems, leaves, roots and siliques, and, to a lower extent, in flowers. {ECO:0000269|PubMed:26150824}. locus:2154598;,locus:2025042;,locus:2065685; AT5G58980,AT1G07380,AT2G38010 Ceramidase Neutral ceramidase (N-CDase) (NCDase) (OsCDase) (EC 3.5.1.23) (Acylsphingosine deacylase) (N-acylsphingosine amidohydrolase),Os01g0624000 protein (Fragment) Q0JL46,A0A0P0V5F0,A0A0P0V5E1 NCASE_ORYSJ,A0A0P0V5F0_ORYSJ,A0A0P0V5E1_ORYSJ Os01g0624000 LOC_Os01g43520 OsJ_02661 P0501G01.30-1,Os01g0624000 OSNPB_010624000 FUNCTION: Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. Uses ceramide instead of phytoceramide as substrate. {ECO:0000269|PubMed:18547394}. ENOG411DTXG A0A1P8B584,A0A1P8B5B1,A0A1P8B589,F4JS93 A0A1P8B584_ARATH,A0A1P8B5B1_ARATH,A0A1P8B589_ARATH,F4JS93_ARATH Transmembrane protein 27821,30848,30371,37458 Transmembrane protein integral component of membrane [GO:0016021] locus:2119315; AT4G13150 NA NA NA NA NA NA NA NA ENOG411DTXA maMYB Q9ASQ2 Q9ASQ2_ARATH AT5g45420/MFC19_9 (Duplicated homeodomain-like superfamily protein) (Uncharacterized protein At5g45420/MFC19_9) FUNCTION: Transcription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}. 34363 AT5g45420/MFC19_9 (Duplicated homeodomain-like superfamily protein) (Uncharacterized protein At5g45420/MFC19_9) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; root hair elongation [GO:0048767] locus:2163573; AT5G45420 MYB family transcription factor NA NA NA NA NA NA NA ENOG411DTXB DCD F4HYF3 DCYD1_ARATH Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial (EC 3.5.99.7) (EC 4.4.1.15) (1-aminocyclopropane-1-carboxylic acid deaminase 1) (AtACD1) (AtD-CDes1) (D-CDes1) (D-CDES) FUNCTION: Catalyzes the production of hydrogen sulfide (H2S) from cysteine. Is mainly responsible for the degradation of cysteine to generate H2S, a regulator of stomatal movement and closure. Has high affinity for D-cysteine.; FUNCTION: Possesses 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity. Acts as a regulator of ACC levels and causes changes in ethylene levels. 3.5.99.7; 4.4.1.15 43900 Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial (EC 3.5.99.7) (EC 4.4.1.15) (1-aminocyclopropane-1-carboxylic acid deaminase 1) (AtACD1) (AtD-CDes1) (D-CDes1) (D-CDES) chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; D-cysteine desulfhydrase activity [GO:0019148]; hydrolase activity [GO:0016787]; D-cysteine catabolic process [GO:0019447]; ethylene biosynthetic process [GO:0009693]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Highly expressed in stems and cauline leaves, and at lower levels in roots, rosette leaves and flowers. {ECO:0000269|PubMed:21986537}. locus:2007725; AT1G48420 1-aminocyclopropane-1-carboxylate Putative D-cysteine desulfhydrase 1, mitochondrial (EC 4.4.1.15) (OsD-CDes1) (D-CDes1),Os02g0773300 protein Q6ZHE5,A0A0P0VQ66 DCYD1_ORYSJ,A0A0P0VQ66_ORYSJ Os02g0773300 LOC_Os02g53330 OJ1611_C08.26 OsJ_08555,Os02g0773300 OSNPB_020773300 FUNCTION: Catalyzes the production of hydrogen sulfide (H2S) from cysteine. ENOG411DTXC CTC1 D0EL35,A0A1P8B816,F4JKR3 CTC1_ARATH,A0A1P8B816_ARATH,F4JKR3_ARATH CST complex subunit CTC1 (Protein CONSERVED TELOMERE MAINTENANCE COMPONENT 1) (AtCTC1),Conserved telomere maintenance component 1 DISRUPTION PHENOTYPE: Severe telomere deprotection accompanied by a rapid onset of developmental defects and sterility. The large majority of plants have grossly distorted floral phyllotaxy with an irregular branching pattern and fasciated (thick and broad) main and lateral stems and siliques. Although most mutants produce an influorescence bolt, this structure is highly variable in size, ranging from very short to wild-type. Flowers and siliques are often fused, and seed yield is typically reduced to 10% of wild-type. The germination efficiency of the few seeds that could be recovered was extremely low. Telomeric and subtelomeric tracts are dramatically eroded, and chromosome ends exhibit increased G overhangs, recombination, and end-to-end fusions. {ECO:0000269|PubMed:19854131}. FUNCTION: Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves (PubMed:19854131). Associates with enzymatically active telomerase (PubMed:25329641). {ECO:0000269|PubMed:19854131, ECO:0000269|PubMed:25329641}. 141925,128151,142182 CST complex subunit CTC1 (Protein CONSERVED TELOMERE MAINTENANCE COMPONENT 1) (AtCTC1),Conserved telomere maintenance component 1 chromosome, telomeric region [GO:0000781]; nucleus [GO:0005634]; DNA binding [GO:0003677]; telomere maintenance [GO:0000723],telomere maintenance [GO:0000723],chromosome, telomeric region [GO:0000781]; telomere maintenance [GO:0000723] locus:2118445; AT4G09680 CST complex subunit Os09g0376000 protein Q6H4S3 Q6H4S3_ORYSJ Os09g0376000 Os09g0376000 OSJNBa0041C07.1 OSNPB_090376000 P0711A01.15 ENOG411DTXM P0CB16 DRL25_ARATH Putative disease resistance protein At4g19050 FUNCTION: Potential disease resistance protein. {ECO:0000250}. 136827 Putative disease resistance protein At4g19050 plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2117149; AT4G19050 Inherit from euNOG: defense response NA NA NA NA NA NA NA ENOG411DTXN Q8LA21 Q8LA21_ARATH At4g32750 (Transmembrane protein) (Uncharacterized protein At4g32750) 33081 At4g32750 (Transmembrane protein) (Uncharacterized protein At4g32750) integral component of membrane [GO:0016021] locus:2125726; AT4G32750 NA Os02g0272400 protein Q6EST5 Q6EST5_ORYSJ P0521F09.19 Os02g0272400 OSNPB_020272400 ENOG411DTXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L-type lectin-domain containing receptor kinase S.5-like Lectin-like protein kinase-like (Os08g0514100 protein) Q6Z8M4 Q6Z8M4_ORYSJ P0711H09.32 Os08g0514100 OSNPB_080514100 ENOG411DTXI VPS20.2,VPS20.1 Q9FY89,Q8GXN6,F4KC57 VP202_ARATH,VP201_ARATH,F4KC57_ARATH Vacuolar protein sorting-associated protein 20 homolog 2 (AtVPS20-2) (Charged multivesicular body protein 6 homolog 2) (ESCRT-III complex subunit VPS20 homolog 2),Vacuolar protein sorting-associated protein 20 homolog 1 (AtVPS20-1) (Charged multivesicular body protein 6 homolog 1) (ESCRT-III complex subunit VPS20 homolog 1),SNF7 family protein FUNCTION: Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo (By similarity). {ECO:0000250}. R-ATH-1632852;R-ATH-917729; 24609,24794,27669 Vacuolar protein sorting-associated protein 20 homolog 2 (AtVPS20-2) (Charged multivesicular body protein 6 homolog 2) (ESCRT-III complex subunit VPS20 homolog 2),Vacuolar protein sorting-associated protein 20 homolog 1 (AtVPS20-1) (Charged multivesicular body protein 6 homolog 1) (ESCRT-III complex subunit VPS20 homolog 1),SNF7 family protein cytosol [GO:0005829]; ESCRT III complex [GO:0000815]; late endosome [GO:0005770]; plasma membrane [GO:0005886]; intralumenal vesicle formation [GO:0070676]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],endosome [GO:0005768]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],ESCRT III complex [GO:0000815]; plasma membrane [GO:0005886]; vacuolar transport [GO:0007034] locus:2184767;,locus:2163996; AT5G09260,AT5G63880 Vacuolar protein sorting-associated protein Os02g0596500 protein (Fragment) A0A0P0VL75 A0A0P0VL75_ORYSJ Os02g0596500 OSNPB_020596500 ENOG411DTXJ Q5HZ48,Q9FGQ8 Q5HZ48_ARATH,Q9FGQ8_ARATH At5g49800 (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein 27425,23152 At5g49800 (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein lipid binding [GO:0008289] locus:2155461; AT5G49800 START domain Expressed protein (Os11g0245500 protein) (cDNA clone:001-116-B12, full insert sequence) Q53NA1 Q53NA1_ORYSJ LOC_Os11g14070 Os11g0245500 OSNPB_110245500 ENOG411DTXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os08g0504000 protein (Putative transparent testa) Q6ZFH4 Q6ZFH4_ORYSJ Os08g0504000 OJ1134_H03.1 OJ1506_F01.33 OsJ_27857 OSNPB_080504000 ENOG411DTXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os07g0636900 protein (Fragment) Q0D4B1 Q0D4B1_ORYSJ Os07g0636900 Os07g0636900 OSNPB_070636900 ENOG411DTXU DTX51 Q9SZE2 DTX51_ARATH Protein DETOXIFICATION 51 (AtDTX51) (Multidrug and toxic compound extrusion protein 51) (MATE protein 51) (Protein ABNORMAL SHOOT 3) (Protein ACTIVATED DISEASE SUSCEPTIBILITY 1) (Protein ADS1) (Protein ALTERED DEVELOPMENT PROGRAM 1) (Protein ADP1) (Protein NOVEL ION CARRIER 4) (Protein NIC4) DISRUPTION PHENOTYPE: Enhanced resistance to bacterial pathogen PstDC3000 in RNAi mutant. {ECO:0000269|PubMed:21762165}. FUNCTION: Functions as a multidrug and toxin extrusion transporter that negatively regulates plant disease resistance (PubMed:21762165). Plays an important role in maintaining normal plant architecture, possibly by regulating local auxin biosynthesis (PubMed:24391508). May act as a negative regulator of hypocotyl cell elongation in the light (PubMed:26160579). {ECO:0000269|PubMed:21762165, ECO:0000269|PubMed:24391508, ECO:0000269|PubMed:26160579}. MISCELLANEOUS: Overexpression of DTX51 alters shoot developmental programs leading to a loss of apical dominance phenotype. {ECO:0000269|PubMed:26160579}. R-ATH-425366; 57054 Protein DETOXIFICATION 51 (AtDTX51) (Multidrug and toxic compound extrusion protein 51) (MATE protein 51) (Protein ABNORMAL SHOOT 3) (Protein ACTIVATED DISEASE SUSCEPTIBILITY 1) (Protein ADS1) (Protein ALTERED DEVELOPMENT PROGRAM 1) (Protein ADP1) (Protein NOVEL ION CARRIER 4) (Protein NIC4) endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; auxin homeostasis [GO:0010252]; defense response [GO:0006952]; drug transmembrane transport [GO:0006855]; negative regulation of defense response [GO:0031348]; regulation of organ growth [GO:0046620]; root morphogenesis [GO:0010015] TISSUE SPECIFICITY: Expressed in the meristematic regions. Mainly detected in tissues where cells were actively dividing, such as leaf primordia and young leaves, the junction between lateral root and the primary root, root cap, hydathodes, the junction between secondary inflorescence and the main inflorescence, young stamen and young siliques (PubMed:24391508). Highly expressed at the junction between the hypocotyl and the root, and at the marginal areas of cotyledons and true leaves, coinciding with the locations of the hydathode. Also highly expressed at the basal regions of the newly emerged lateral roots. In the floral organs, mostly expressed at the style of the pistil (PubMed:26160579). {ECO:0000269|PubMed:24391508, ECO:0000269|PubMed:26160579}. locus:2119941; AT4G29140 Multidrug and toxin extrusion protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q5Z7G9 Q5Z7G9_ORYSJ OSJNBa0090E14.22 Os06g0558300 OSNPB_060558300 ENOG411DTXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA-binding protein Os02g0822300 protein,Os01g0533450 protein (Fragment) A0A0P0VRQ0,A0A0P0V3L2 A0A0P0VRQ0_ORYSJ,A0A0P0V3L2_ORYSJ Os02g0822300 OSNPB_020822300,Os01g0533450 OSNPB_010533450 ENOG411DTXW WRKY28 Q8VWJ2 WRK28_ARATH Probable WRKY transcription factor 28 (WRKY DNA-binding protein 28) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 35563 Probable WRKY transcription factor 28 (WRKY DNA-binding protein 28) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2141872; AT4G18170 Transcription factor NA NA NA NA NA NA NA ENOG411DTXP Q944M2,F4J2V1,Q9LS84,F4JVH0 Q944M2_ARATH,F4J2V1_ARATH,Q9LS84_ARATH,F4JVH0_ARATH AT4g14500/dl3290w (At4g14500) (Expressed protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein,Membrane related protein-like (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At3g23080) 49498,44048,47609,33878 AT4g14500/dl3290w (At4g14500) (Expressed protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein,Membrane related protein-like (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At3g23080) integral component of membrane [GO:0016021]; lipid binding [GO:0008289],lipid binding [GO:0008289] locus:2129790;,locus:2094568; AT4G14500,AT3G23080 Inherit from KOG: StAR-related lipid transfer (START) domain containing Os07g0185200 protein,Os07g0185200 protein (Fragment) Q0D845,A0A0P0X2Z6 Q0D845_ORYSJ,A0A0P0X2Z6_ORYSJ Os07g0185200 Os07g0185200 OSNPB_070185200,Os07g0185200 OSNPB_070185200 ENOG411DTXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA vacuole membrane protein Os01g0778700 protein (Putative vacuole membrane protein 1) (cDNA clone:J013000O19, full insert sequence) Q5ZCF3 Q5ZCF3_ORYSJ Os01g0778700 Os01g0778700 OSNPB_010778700 P0010B10.5 ENOG411DTXR ACR11 Q9FZ47,F4I613 ACR11_ARATH,F4I613_ARATH ACT domain-containing protein ACR11 (Protein ACT DOMAIN REPEATS 11),Uridylyltransferase-like protein FUNCTION: May be involved in feedback regulation of amino acid metabolism. May be involved in the regulation of glutamine metabolism. {ECO:0000303|PubMed:21861936}. 31295,22673 ACT domain-containing protein ACR11 (Protein ACT DOMAIN REPEATS 11),Uridylyltransferase-like protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; stromule [GO:0010319]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to light stimulus [GO:0009416]; response to sucrose [GO:0009744],nucleotidyltransferase activity [GO:0016779] TISSUE SPECIFICITY: Expressed in cotyledons, rosette leaves, stems, sepals, style, and tip of pedicel in mature siliques. {ECO:0000269|PubMed:21861936}. locus:2015616; AT1G16880 protein DS12 from 2D-PAGE of leaf chloroplastic ACT domain-containing protein DS12, chloroplastic (Uncharacterized protein DS12 from 2D-PAGE of leaf),Os08g0242700 protein (Fragment) Q0J709,A0A0P0XDE8,A0A0N7KPI4 UP12_ORYSJ,A0A0P0XDE8_ORYSJ,A0A0N7KPI4_ORYSJ Os08g0242700 LOC_Os08g14440,Os08g0242700 OSNPB_080242700 ENOG411DTXS T12C14_70 Q9LZQ3 Q9LZQ3_ARATH Heme binding protein (Uncharacterized protein At3g62370) (Uncharacterized protein T12C14_70) 39852 Heme binding protein (Uncharacterized protein At3g62370) (Uncharacterized protein T12C14_70) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; heme binding [GO:0020037] locus:2096064; AT3G62370 Ethylbenzene dehydrogenase Expressed protein (Os03g0309000 protein) (cDNA clone:J023044B08, full insert sequence) Q10MH1 Q10MH1_ORYSJ Os03g0309000 LOC_Os03g19580 Os03g0309000 OsJ_10580 OSNPB_030309000 ENOG411DTXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1162) NA NA NA NA NA NA NA ENOG411DTXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic porin Mitochondrial outer membrane protein porin 4 (Voltage-dependent anion-selective channel protein 4) (OsVDAC4),Os01g0715500 protein (Fragment) Q0JJV1,A0A0N7KDM4 VDAC4_ORYSJ,A0A0N7KDM4_ORYSJ VDAC4 Os01g0715500 LOC_Os01g51170 B1131B07.20 P0683B11.1,Os01g0715500 OSNPB_010715500 FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). {ECO:0000250}. ENOG411DTXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os11g0587100 protein (Pentatricopeptide, putative, expressed) Q2R1Y4 Q2R1Y4_ORYSJ LOC_Os11g37660 Os11g0587100 OsJ_34502 OSNPB_110587100 ENOG411E7DS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4QX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch NA NA NA NA NA NA NA ENOG411E4QY TRX2 Q38879 TRXH2_ARATH Thioredoxin H2 (AtTrxh2) (Thioredoxin 2) (AtTRX2) FUNCTION: Thiol-disulfide oxidoreductase probably involved in the redox regulation of a number of cytosolic enzymes. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:14749482}. ARA:AT5G39950-MONOMER; 14676 Thioredoxin H2 (AtTrxh2) (Thioredoxin 2) (AtTRX2) cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2178007; AT5G39950 Thioredoxin Thioredoxin H2-1 (OsTrxh2-1) (OsTrx24),Thioredoxin H2-2 (OsTrxh2-2) (OsTrx10) Q6Z4I3,Q851R5 TRH21_ORYSJ,TRH22_ORYSJ Os07g0190800 LOC_Os07g09310 OsJ_23401 OSJNBb0003E08.27,Os03g0800700 LOC_Os03g58630 OsJ_12982 OSJNBa0052F07.8 FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes. ENOG411E4QZ Q8VZK4 Q8VZK4_ARATH Transmembrane protein (Uncharacterized protein At4g16410) 20407 Transmembrane protein (Uncharacterized protein At4g16410) integral component of membrane [GO:0016021] locus:2130599; AT4G16410 Protein of unknown function (DUF751) Os07g0607200 protein (cDNA clone:J013040K22, full insert sequence) Q69J35 Q69J35_ORYSJ Os07g0607200 Os07g0607200 OsJ_25060 OSJNBa0072I06.21 OSNPB_070607200 P0493C06.36 ENOG411E4QT CB5-A Q9FDW8 CYB5A_ARATH Cytochrome b5 isoform A (AtCb5-A) (Cytochrome b5 isoform D) (AtCb5-D) 15220 Cytochrome b5 isoform A (AtCb5-A) (Cytochrome b5 isoform D) (AtCb5-D) chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; stromule [GO:0010319]; heme binding [GO:0020037]; metal ion binding [GO:0046872] locus:2028721; AT1G26340 Cytochrome b5 NA NA NA NA NA NA NA ENOG411E4QU FAX2 Q94A32 FAX2_ARATH Protein FATTY ACID EXPORT 2, chloroplastic (At-FAX2) FUNCTION: May be involved in free fatty acids export from the plastids. {ECO:0000250|UniProtKB:Q93V66}. MISCELLANEOUS: For all TMEM14 proteins, 4 hydrophobic alpha-helical domains are predicted. However, NMR structure determination of the human TMEM14A showed that only 3 of these helices are membrane-spaning while the amphiphilic N-terminal helix is probably located at the lipid micelle-water interface. {ECO:0000305|PubMed:25646734}. 24767 Protein FATTY ACID EXPORT 2, chloroplastic (At-FAX2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536] DEVELOPMENTAL STAGE: Highly expressed during seed development and germination. {ECO:0000305|PubMed:25646734}. locus:2098189; AT3G43520 Transmembrane proteins 14C Os04g0653100 protein A0A0P0WFP9 A0A0P0WFP9_ORYSJ Os04g0653100 OSNPB_040653100 ENOG411E4QV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 4B1 (OsCASPL4B1) Q84NQ7 CSPL4_ORYSJ Os07g0692200 LOC_Os07g49200 P0034A04.117 ENOG411E4QW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E4QP ERF119 Q9LUA2 EF119_ARATH Ethylene-responsive transcription factor ERF119 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 36732 Ethylene-responsive transcription factor ERF119 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2092110; AT3G25890 Transcription factor NA NA NA NA NA NA NA ENOG411E4QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) Os05g0541700 protein (Fragment) A0A0P0WPY5 A0A0P0WPY5_ORYSJ Os05g0541700 OSNPB_050541700 ENOG411E4QR Q8L8U9 CSPLS_ARATH CASP-like protein 2C1 (AtCASPL2C1) 20091 CASP-like protein 2C1 (AtCASPL2C1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:2117502; AT4G25830 CASP-like protein NA NA NA NA NA NA NA ENOG411E4QS SAP4,SAP6 Q9SJM6,Q94B40 SAP4_ARATH,SAP6_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 4 (AtSAP4),Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AtSAP6) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 17784,18598 Zinc finger A20 and AN1 domain-containing stress-associated protein 4 (AtSAP4),Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AtSAP6) DNA binding [GO:0003677]; zinc ion binding [GO:0008270],DNA binding [GO:0003677]; zinc ion binding [GO:0008270]; response to chitin [GO:0010200] locus:2049505;,locus:2083208; AT2G36320,AT3G52800 zinc finger A20 and AN1 domain-containing stress-associated protein Zinc finger A20 and AN1 domain-containing stress-associated protein 5 (OsSAP5) Q6H754 SAP5_ORYSJ SAP5 Os02g0530300 LOC_Os02g32840 OsJ_06995 P0476H10.31 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E4QM RPL37B,RPL37A,RPL37C Q43292,Q8LFH7,Q8LEM8,A0A1I9LRU8 RL372_ARATH,RL371_ARATH,RL373_ARATH,A0A1I9LRU8_ARATH 60S ribosomal protein L37-2,60S ribosomal protein L37-1,60S ribosomal protein L37-3,Ribosomal protein L37 FUNCTION: Binds to the 23S rRNA. {ECO:0000250}.,FUNCTION: Binds to the 23S rRNA. {ECO:0000256|RuleBase:RU000576}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 10841,10817,10771,8975 60S ribosomal protein L37-2,60S ribosomal protein L37-1,60S ribosomal protein L37-3,Ribosomal protein L37 cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],ribosome [GO:0005840]; metal ion binding [GO:0046872]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2018184;,locus:2037833;,locus:2093407; AT1G52300,AT1G15250,AT3G16080 Binds to the 23S rRNA (By similarity) Ribosomal protein L37,Os02g0815000 protein Q0J889,Q6Z8Y5,A0A0P0VR59 Q0J889_ORYSJ,Q6Z8Y5_ORYSJ,A0A0P0VR59_ORYSJ Os08g0128500 Os08g0128500 OsJ_25910 OSNPB_080128500,Os02g0111700 OsJ_05070 OSNPB_020111700 P0501G04.27,Os02g0815000 OSNPB_020815000 FUNCTION: Binds to the 23S rRNA. {ECO:0000256|RuleBase:RU000576}. ENOG411E4QN Q8LFI6 Q8LFI6_ARATH Uncharacterized protein 29552 Uncharacterized protein locus:2032945; AT1G25370 Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411E4QH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4QI OFP12,OFP16 F4I8R6,Q9SKY9,A0A1P8AWY8 OFP12_ARATH,OFP16_ARATH,A0A1P8AWY8_ARATH Transcription repressor OFP12 (Ovate family protein 12) (AtOFP12),Transcription repressor OFP16 (Ovate family protein 16) (AtOFP16),Ovate family protein 12 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21886836}. FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP12 have no visible phenotype. {ECO:0000305|PubMed:21886836}.,MISCELLANEOUS: Plants over-expressing OFP16 show small rosette size, late flowering, reduced fertilization and blunt-end siliques. {ECO:0000305|PubMed:21886836}. 24968,27062,26825 Transcription repressor OFP12 (Ovate family protein 12) (AtOFP12),Transcription repressor OFP16 (Ovate family protein 16) (AtOFP16),Ovate family protein 12 nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}.,TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2201011;,locus:2045472; AT1G05420,AT2G32100 Pfam:DUF623 Os03g0159400 protein (cDNA clone:002-144-E12, full insert sequence) Q10RH0 Q10RH0_ORYSJ LOC_Os03g06350 Os03g0159400 OSNPB_030159400 ENOG411E4QJ CFM4 Q9SVI9,F4IGM0,F4JV86 Q9SVI9_ARATH,F4IGM0_ARATH,F4JV86_ARATH At4g39040 (RNA-binding CRS1 / YhbY (CRM) domain protein) (Uncharacterized protein AT4g39040) (Uncharacterized protein At4g39040/F19H22_140) (Uncharacterized protein F19H22.140),RNA-binding CRS1 / YhbY (CRM) domain protein 33271,24715,31562 At4g39040 (RNA-binding CRS1 / YhbY (CRM) domain protein) (Uncharacterized protein AT4g39040) (Uncharacterized protein At4g39040/F19H22_140) (Uncharacterized protein F19H22.140),RNA-binding CRS1 / YhbY (CRM) domain protein chloroplast [GO:0009507]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2120282;,locus:2050150; AT4G39040,AT2G21350 Crs1 yhby domain containing protein CRS1/YhbY domain containing protein, expressed (Os10g0512500 protein) (cDNA clone:001-204-C10, full insert sequence),Os10g0512500 protein (Fragment) Q9FW07,A0A0P0XW91 Q9FW07_ORYSJ,A0A0P0XW91_ORYSJ LOC_Os10g36860 Os10g0512500 OsJ_32140 OSJNBa0055O03.5 OSNPB_100512500,Os10g0512500 OSNPB_100512500 ENOG411E4QK T8L23.1 Q9FVU7 Q9FVU7_ARATH 40S ribosomal protein (At1g57540) (Uncharacterized protein At1g57540/F25P12_3) (Uncharacterized protein T8L23.1) 11269 40S ribosomal protein (At1g57540) (Uncharacterized protein At1g57540/F25P12_3) (Uncharacterized protein T8L23.1) integral component of membrane [GO:0016021]; ribosome [GO:0005840] locus:2027544; AT1G57540 NA Os01g0250600 protein (cDNA clone:006-207-H10, full insert sequence) (cDNA clone:J033070K07, full insert sequence) Q5NBD8 Q5NBD8_ORYSJ Os01g0250600 OsJ_01111 OSNPB_010250600 P0434D08.16 ENOG411E4QF BET12 Q94CG2 BET12_ARATH Bet1-like SNARE 1-2 (AtBET12) (Bet1/Sft1-like SNARE 14b) (AtBS14b) FUNCTION: Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles (By similarity). {ECO:0000250}. 15207 Bet1-like SNARE 1-2 (AtBET12) (Bet1/Sft1-like SNARE 14b) (AtBS14b) endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; SNAP receptor activity [GO:0005484]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031] locus:1005716319; AT4G14455 Bet1-like SNARE NA NA NA NA NA NA NA ENOG411E4QG Q9SYB4 Q9SYB4_ARATH Postsynaptic protein CRIPT, putative (Postsynaptic protein-like protein) (Uncharacterized protein At1g61780/T13M11_14) (Very similar postsynaptic protein, CRIPT) 11113 Postsynaptic protein CRIPT, putative (Postsynaptic protein-like protein) (Uncharacterized protein At1g61780/T13M11_14) (Very similar postsynaptic protein, CRIPT) locus:2195738; AT1G61780 Cysteine-rich PDZ-binding Os08g0190800 protein (Putative postsynaptic protein CRIPT) (cDNA, clone: J065182K15, full insert sequence) Q6YZ89 Q6YZ89_ORYSJ Os08g0190800 B1099H05.53 OsJ_26307 OSNPB_080190800 P0610E02.29 ENOG411E4QA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S13 Os12g0424300 protein,Ribosomal protein S13 A0A0P0Y9L0,Q8HCP0 A0A0P0Y9L0_ORYSJ,Q8HCP0_ORYSJ Os12g0424300 OSNPB_120424300,rps13 ENOG411E4Q8 CP1 Q9FDX6 Q9FDX6_ARATH AT5g49480 (AT5g49480/K6M13_2) (Ca2+-binding protein 1) (NaCl-inducible Ca2+-binding protein-like; calmodulin-like) FUNCTION: Binds calcium in vitro. {ECO:0000269|PubMed:9678579}. 17211 AT5g49480 (AT5g49480/K6M13_2) (Ca2+-binding protein 1) (NaCl-inducible Ca2+-binding protein-like; calmodulin-like) cytosol [GO:0005829]; calcium ion binding [GO:0005509]; hyperosmotic salinity response [GO:0042538] locus:2157864; AT5G49480 EFh EF hand family protein, expressed (Os03g0310800 protein) (cDNA clone:001-018-G06, full insert sequence) (cDNA clone:J013024O19, full insert sequence) Q10MF3 Q10MF3_ORYSJ LOC_Os03g19720 Os03g0310800 OsJ_10593 OSNPB_030310800 ENOG411E4Q9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0543900 protein (cDNA clone:J033150C13, full insert sequence),Os01g0768600 protein (Fragment),Os12g0544600 protein (Fragment) Q0E0J8,Q0JIZ7,A0A0P0YB27 Q0E0J8_ORYSJ,Q0JIZ7_ORYSJ,A0A0P0YB27_ORYSJ Os02g0543900 Os02g0543900 OSNPB_020543900,Os01g0768600 Os01g0768600 OSNPB_010768600,Os12g0544600 OSNPB_120544600 ENOG411E4Q5 SAP3 Q9ZNU9 SAP3_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 3 (AtSAP3) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 17877 Zinc finger A20 and AN1 domain-containing stress-associated protein 3 (AtSAP3) DNA binding [GO:0003677]; zinc ion binding [GO:0008270] locus:2042011; AT2G27580 A20-like zinc finger NA NA NA NA NA NA NA ENOG411E4Q6 MNC17.5 Q9FIG0 Q9FIG0_ARATH BTB/POZ domain-containing protein (Putative elongin protein) (Similarity to elongin C) (Uncharacterized protein At5g59140) R-ATH-6796648; Pathways in cancer (05200),Ubiquitin mediated proteolysis (04120),HIF-1 signaling pathway (04066),Renal cell carcinoma (05211) 11054 BTB/POZ domain-containing protein (Putative elongin protein) (Similarity to elongin C) (Uncharacterized protein At5g59140) cytosol [GO:0005829]; elongin complex [GO:0070449]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2168454; AT5G59140 transcription elongation factor B polypeptide Os11g0707700 protein (Skp1 family, tetramerisation domain containing protein, expressed) (cDNA clone:002-101-E06, full insert sequence) Q53NW5 Q53NW5_ORYSJ Os11g0707700 LOC_Os11g48030 Os11g0707700 OsJ_34887 OSNPB_110707700 ENOG411E4Q2 SAUR79 Q8GWV0 Q8GWV0_ARATH At2g35290 (Uncharacterized protein At2g35290) 14179 At2g35290 (Uncharacterized protein At2g35290) locus:2063439; AT2G35290 NA Expressed protein (Os03g0170100 protein) Q8S7W4 Q8S7W4_ORYSJ OSJNBa0091P11.19 LOC_Os03g07400 Os03g0170100 OsJ_09575 OSNPB_030170100 ENOG411E4Q3 HMGB1 O49595,F4J5M5 HMGB1_ARATH,F4J5M5_ARATH High mobility group B protein 1 (High mobility group protein A) (AtHMGalpha) (HMG alpha) (Nucleosome/chromatin assembly factor group D 01) (Nucleosome/chromatin assembly factor group D 1),High mobility group B1 DISRUPTION PHENOTYPE: Slightly delayed and reduced germination rate. Reduced root length. Enhanced sensitivity to methyl methanesulfonate (MMS). {ECO:0000269|PubMed:18822296}. FUNCTION: Binds preferentially double-stranded DNA. Modulates general plant growth and stress tolerance. Confers sensitivity to salt and genotoxic (methyl methanesulfonate, MMS) stresses. {ECO:0000269|PubMed:17114349, ECO:0000269|PubMed:9461286}. 20265,18319 High mobility group B protein 1 (High mobility group protein A) (AtHMGalpha) (HMG alpha) (Nucleosome/chromatin assembly factor group D 01) (Nucleosome/chromatin assembly factor group D 1),High mobility group B1 chromatin [GO:0000785]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; structural constituent of chromatin [GO:0030527]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin assembly or disassembly [GO:0006333],nucleus [GO:0005634]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in cotyledons, roots, stems, leaves and flowers (excluding pedicels). {ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:17316617, ECO:0000269|PubMed:9461286}. locus:2074368; AT3G51880 high mobility group NA NA NA NA NA NA NA ENOG411DZB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) (Fragment) Q654S1,Q654S0,A0A0P0V2C2 Q654S1_ORYSJ,Q654S0_ORYSJ,A0A0P0V2C2_ORYSJ B1135C02.24-1 Os01g0326000 OSNPB_010326000,B1135C02.24-2 Os01g0326000 OSNPB_010326000,Os01g0326300 OSNPB_010326300 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DZB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os07g0191600 protein (Fragment) C7J4W6 C7J4W6_ORYSJ Os07g0191600 Os07g0191600 OSNPB_070191600 ENOG411DZB0 CHER1 Q94AN2 CHER1_ARATH Choline transporter protein 1 (AtCTL1) DISRUPTION PHENOTYPE: Altered choline metabolite profile. Several phenotypic abnormalities (e.g. dwarf with defects in both shoot and root architecture), including reduced pore density and altered pore structure in the sieve areas, associated with defective symplastic transport through phloem. Increased number of sieve elements (SE)-like cells instead of two companion cells (CCs) and two SEs. Defects in procambium maintenance and phloem patterning. Abnormal retaining of desmotubules in the symplastic space in sieve pores (PubMed:25008948). In cher1-4, impaired secondary plasmodesmata (PD) formation and development leading to starch and soluble sugars excess accumulation, and stunted growth. Altered PD localization of the luteoviral movement protein MP17. Reduced level of choline and phosphocholine (PubMed:27743414). {ECO:0000269|PubMed:25008948, ECO:0000269|PubMed:27743414}. FUNCTION: Regulator of vesicle trafficking, including endocytosis. Necessary for secondary plasmodesmata (PD) formation and development via the secretory trafficking regulation of proteins required for PD development, thus influencing intercellular communication (PubMed:27743414, PubMed:29284002). Modulates ion homeostasis, especially in roots, by monitoring the transport and subsequent subcellular localization of some ion transporters (PubMed:29284002). Choline transporter involved in the regulation of choline metabolite homeostasis during root and phloem development (PubMed:25008948). Modulates phloem morphogenesis and conductivity (PubMed:25008948). Required for procambium maintenance and sieve plate development (e.g. sieve plate and sieve pore elaboration) to mediate long-distance cell-to-cell communication via symplastic transport through the phloem (PubMed:25008948). Involved in the regulation of intracellular trafficking of PIN-type auxin transporters (e.g. PIN1 and PIN3), a process controlling seedling growth, apical dominance, cell elongation and apical hook development. Modulates also membrane lipids (e.g. phospholipids and sphingolipids) homeostasis (PubMed:29283991). {ECO:0000269|PubMed:25008948, ECO:0000269|PubMed:27743414, ECO:0000269|PubMed:29283991, ECO:0000269|PubMed:29284002}.; FUNCTION: (Microbial infection) Required for PD localization of MP17, the luteoviral movement protein. {ECO:0000269|PubMed:27743414}. R-ATH-1483191;R-ATH-425366;R-ATH-6798163;R-ATH-6798695; 78737 Choline transporter protein 1 (AtCTL1) cytoskeleton [GO:0005856]; early endosome membrane [GO:0031901]; integral component of membrane [GO:0016021]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; secondary plasmodesma [GO:0009551]; sieve plate [GO:0097218]; symplast [GO:0055044]; trans-Golgi network [GO:0005802]; trans-Golgi network membrane [GO:0032588]; choline transmembrane transporter activity [GO:0015220]; choline transport [GO:0015871]; phloem development [GO:0010088]; plasmodesma organization [GO:0009663]; procambium histogenesis [GO:0010067]; root development [GO:0048364]; sieve element differentiation [GO:0090603]; xylem and phloem pattern formation [GO:0010051] locus:2090171; AT3G15380 choline transporter-like protein OSJNBa0032F06.5 protein (OSJNBb0017I01.27 protein) (Os04g0681400 protein) (cDNA clone:J023107N13, full insert sequence),OSJNBa0032F06.8 protein (Os04g0681600 protein) (cDNA clone:001-113-E05, full insert sequence) Q7X668,Q7XPX3 Q7X668_ORYSJ,Q7XPX3_ORYSJ Os04g0681400 OSJNBa0032F06.5 OSJNBb0017I01.27 OSNPB_040681400,Os04g0681600 Os04g0681600 OSJNBa0032F06.8 OSNPB_040681600 ENOG411DZB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone deacetylase domain NA NA NA NA NA NA NA ENOG411DZB3 PEPKR1 Q9LDQ1 Q9LDQ1_ARATH At1g12580/T12C24_10 (F5O11.32) (Phosphoenolpyruvate carboxylase-related kinase 1) (T12C24.12) R-ATH-445355;R-ATH-5627123; 57461 At1g12580/T12C24_10 (F5O11.32) (Phosphoenolpyruvate carboxylase-related kinase 1) (T12C24.12) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777] locus:2034720; AT1G12580 calcium-dependent protein kinase Os06g0127300 protein (Fragment) A0A0P0WSB4 A0A0P0WSB4_ORYSJ Os06g0127300 OSNPB_060127300 ENOG411DZB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aquaporin Aquaporin NIP2-1 (Low silicon protein 1) (NOD26-like intrinsic protein 2-1) (OsNIP2;1) (Silicon influx transporter LSI1),Aquaporin NIP2-2 (Low silicon protein 6) (NOD26-like intrinsic protein 2-2) (OsNIP2;2),Os06g0228200 protein (Fragment) Q6Z2T3,Q67WJ8,A0A0P0WUA6 NIP21_ORYSJ,NIP22_ORYSJ,A0A0P0WUA6_ORYSJ NIP2-1 LSI1 SIIT1 Os02g0745100 LOC_Os02g51110 OJ1118_G04.16 OJ1734_E02.43 OsJ_008085,NIP2-2 LSI6 Os06g0228200 LOC_Os06g12310 OsJ_019836 P0425F05.28-1,Os06g0228200 OSNPB_060228200 FUNCTION: Silicon influx transporter responsible for silicon transport from the external solution to the root cells (PubMed:16572174). Is coupled with the silicon efflux transporter LSI2 in both exodermal and endodermal root cells for an efficient silicon transport across the cells into the stele (PubMed:17625566). Silicon is beneficial to plant growth and helps plants to overcome abiotic and biotic stresses by preventing lodging (falling over) and increasing resistance to pests and diseases, as well as other stresses (PubMed:16572174). Is coupled with LSI2 transporter in roots for efficient uptake of arsenite, which is further dispatched in shoots and grains (PubMed:18626020). Mediates uptake of methylated arsenic species in roots (PubMed:19542298). {ECO:0000269|PubMed:16572174, ECO:0000269|PubMed:17625566, ECO:0000269|PubMed:18626020, ECO:0000269|PubMed:19542298}.,FUNCTION: Silicon transporter involved in the distribution of silicon in shoots. Is responsible for the transport of silicon from the xylem to the leaf tissues. Silicon is beneficial to plant growth and helps plants to overcome abiotic and biotic stresses by preventing lodging (falling over) and increasing resistance to pests and diseases, as well as other stresses (PubMed:18515498). In the nodes, involved with LSI2 and LSI3 in silicon intervascular transfer, which is required for the preferential distribution of silicon, such as hyperaccumulation of silicon in the husk (PubMed:26283388). {ECO:0000269|PubMed:18515498, ECO:0000269|PubMed:26283388}. ENOG411DZB5 Q0WPP7,Q9C877,A0A1P8AQI6 Q0WPP7_ARATH,Q9C877_ARATH,A0A1P8AQI6_ARATH Uncharacterized protein At1g33290 (p-loop containing nucleoside triphosphate hydrolases superfamily protein),At1g33290 (Uncharacterized protein T16O9.17) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein WT phenotype,Columella root cap cells fail to detach.,same as smb-3 single mutant,Root cap cells appear as a mass lacking uniform morphology. Cells can be highly elongated and twisted. Cells fail to stop elongation and to adopt the rigid rectangular morphology of COL cells. When compared with smb-3 the triple mutant has thesame number of complete LRC layers and the appearance of the cells in those layers closely resembles that in smb-3. However partial remains of older LRC layers remain attached to the meristem in the triple mutant giving it a messy appearance. Remains of old LRC cap layers can be found still attached to the root along its whole length. 33984,42250,34181 Uncharacterized protein At1g33290 (p-loop containing nucleoside triphosphate hydrolases superfamily protein),At1g33290 (Uncharacterized protein T16O9.17) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2196690; AT1G33290 ATPase family associated with various cellular activities (AAA) Expressed protein (Os12g0209000 protein) Q2QW43 Q2QW43_ORYSJ Os12g0209000 LOC_Os12g10640 OSNPB_120209000 ENOG411DZB6 WRKY71 Q93WV4 WRK71_ARATH Probable WRKY transcription factor 71 (WRKY DNA-binding protein 71) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 31955 Probable WRKY transcription factor 71 (WRKY DNA-binding protein 71) nucleus [GO:0005634]; sequence-specific double-stranded DNA binding [GO:1990837]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2019382; AT1G29860 WRKY Os01g0665500 protein,Os01g0665750 protein (Fragment) A0A0P0V6B0,A0A0P0V687 A0A0P0V6B0_ORYSJ,A0A0P0V687_ORYSJ Os01g0665500 OSNPB_010665500,Os01g0665750 OSNPB_010665750 ENOG411DZB7 A0A1P8AQ45,A0A1P8AQ53,A0A1P8AQ29,F4HQE2 A0A1P8AQ45_ARATH,A0A1P8AQ53_ARATH,A0A1P8AQ29_ARATH,F4HQE2_ARATH RAD3-like DNA-binding helicase protein FUNCTION: ATP-dependent DNA helicase implicated in DNA replication, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates (PubMed:25516598, PubMed:25595823). Plays also a role in preserving the stability of 45S rDNA repeats (PubMed:27760121). {ECO:0000269|PubMed:25516598, ECO:0000269|PubMed:25595823, ECO:0000269|PubMed:27760121}. 90887,93845,114720,116632 RAD3-like DNA-binding helicase protein nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleobase-containing compound metabolic process [GO:0006139],nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; nucleobase-containing compound metabolic process [GO:0006139]; regulation of transcription, DNA-templated [GO:0006355],mitochondrion [GO:0005739]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; maintenance of rDNA [GO:0043007]; negative regulation of DNA recombination [GO:0045910]; pollen development [GO:0009555]; recombinational repair [GO:0000725]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; telomere maintenance [GO:0000723] locus:2016209; AT1G79950 regulator of telomere elongation helicase Regulator of telomere elongation helicase 1 homolog (EC 3.6.4.12),Os01g0592900 protein A0A0P0V4R0,A0A0P0V4R5 RTEL1_ORYSJ,A0A0P0V4R5_ORYSJ RTEL1 Os01g0592900 LOC_Os01g40980 P0710A02.28-1,Os01g0592900 OSNPB_010592900 FUNCTION: ATP-dependent DNA helicase implicated in DNA replication, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. {ECO:0000305}. ENOG411DZBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0610000 protein (Fragment),Os04g0609900 protein Q0JA97,A0A0P0WEM6,A0A0P0WES5 Q0JA97_ORYSJ,A0A0P0WEM6_ORYSJ,A0A0P0WES5_ORYSJ Os04g0610000 Os04g0610000 OSNPB_040610000,Os04g0609900 OSNPB_040609900,Os04g0610000 OSNPB_040610000 ENOG411DZBY DEK3,MDF20.10 Q9SUA1,F4K4Y5 Q9SUA1_ARATH,F4K4Y5_ARATH DEK domain-containing chromatin associated protein (Uncharacterized protein AT4g26630),DEK domain-containing chromatin associated protein 85249,87207 DEK domain-containing chromatin associated protein (Uncharacterized protein AT4g26630),DEK domain-containing chromatin associated protein cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; chromatin remodeling [GO:0006338]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of double-strand break repair [GO:2000779]; response to salt stress [GO:0009651],mitochondrion [GO:0005739]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; chromatin remodeling [GO:0006338]; regulation of double-strand break repair [GO:2000779] locus:2133847;,locus:2162097; AT4G26630,AT5G55660 DEK C terminal domain NA NA NA NA NA NA NA ENOG411DZBR WRKY44,TTG2 Q9ZUU0,C0SV76,A8MRJ2 WRK44_ARATH,C0SV76_ARATH,A8MRJ2_ARATH WRKY transcription factor 44 (Protein TRANSPARENT TESTA GLABRA 2) (WRKY DNA-binding protein 44),Uncharacterized protein At2g37260 (WRKY family transcription factor family protein) (Fragment),WRKY family transcription factor family protein Pale brown seeds and unbranched trichomes.,Reduced trichome numbers.Trichomes that do form have reduced (e.g. single) branch numbers.,Clusters of unbranched trichomes.,Reduced number of trichomes and abnormal trichomes. Pale seed coats. Smaller seeds. Yellow seed coat; Abnormal trichomes-D. Smyth-2002 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. 47141,38674,38432 WRKY transcription factor 44 (Protein TRANSPARENT TESTA GLABRA 2) (WRKY DNA-binding protein 44),Uncharacterized protein At2g37260 (WRKY family transcription factor family protein) (Fragment),WRKY family transcription factor family protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; epidermal cell fate specification [GO:0009957]; seed coat development [GO:0010214]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat. locus:2049852; AT2G37260 WRKY transcription factor NA NA NA NA NA NA NA ENOG411DZBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os10g0415100 protein (Transmembrane amino acid transporter protein, expressed) (cDNA clone:002-173-F03, full insert sequence) Q338C3 Q338C3_ORYSJ Os10g0415100 LOC_Os10g27980 Os10g0415100 OsJ_31515 OSNPB_100415100 ENOG411DZBH ABCI6 Q9CAF5 AB6I_ARATH ABC transporter I family member 6, chloroplastic (ABC transporter ABCI.6) (AtABCI6) (ABC transporter ATPase) (Non-intrinsic ABC protein 7) (AtNAP7) (Plastid SufC-like protein) Embryo defective; Globular-G. Moller-2004 FUNCTION: Essential protein. Required during embryo development, especially at early stages. Involved in chloroplast differentiation. {ECO:0000269|PubMed:15184673}. 36931 ABC transporter I family member 6, chloroplastic (ABC transporter ABCI.6) (AtABCI6) (ABC transporter ATPase) (Non-intrinsic ABC protein 7) (AtNAP7) (Plastid SufC-like protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; embryo development ending in seed dormancy [GO:0009793]; thylakoid membrane organization [GO:0010027] DEVELOPMENTAL STAGE: During seed development, first expressed in developing endosperm, embryo and suspensor and later restricted to the embryo. In seedlings, confined to apical meristems and vascular tissues. In flowers, mostly present in floral meristem, in filaments of the stamen and in the style. {ECO:0000269|PubMed:15184673}. TISSUE SPECIFICITY: Present in all organs, with higher levels in aerial parts. {ECO:0000269|PubMed:15184673}. locus:2075880; AT3G10670 ABC transporter I family member 6 ATP-dependent transporter ycf16, putative, expressed (Os03g0332700 protein) (cDNA clone:J023135H16, full insert sequence) Q10LW5 Q10LW5_ORYSJ Os03g0332700 LOC_Os03g21490 Os03g0332700 OsJ_10721 OSNPB_030332700 ENOG411DZBI IRX14,IRX14H Q8L707,Q9FH90 IRX14_ARATH,IX14H_ARATH Probable beta-1,4-xylosyltransferase IRX14 (EC 2.4.2.-) (Protein IRREGULAR XYLEM 14) (Xylan xylosyltransferase IRX14),Probable beta-1,4-xylosyltransferase IRX14H (EC 2.4.2.-) (Protein IRREGULAR XYLEM 14 homolog) (Xylan xylosyltransferase IRX14H) DISRUPTION PHENOTYPE: Reduced xylan content in cell wall. {ECO:0000269|PubMed:17944810}. Abnormal xylem; Low xylose levels in cell walls; Drought tolerant-A. Showalter-2010 FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone. {ECO:0000269|PubMed:17944810, ECO:0000269|PubMed:20335400, ECO:0000269|PubMed:20424005}.,FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone. {ECO:0000269|PubMed:20335400, ECO:0000269|PubMed:20424005}. ARA:AT4G36890-MONOMER; 2.4.2.24; 2.4.2.- 59099,55349 Probable beta-1,4-xylosyltransferase IRX14 (EC 2.4.2.-) (Protein IRREGULAR XYLEM 14) (Xylan xylosyltransferase IRX14),Probable beta-1,4-xylosyltransferase IRX14H (EC 2.4.2.-) (Protein IRREGULAR XYLEM 14 homolog) (Xylan xylosyltransferase IRX14H) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; 1,4-beta-D-xylan synthase activity [GO:0047517]; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity [GO:0015018]; xylosyltransferase activity [GO:0042285]; cell wall organization [GO:0071555]; fruit development [GO:0010154]; glucuronoxylan biosynthetic process [GO:0010417]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; plant-type secondary cell wall biogenesis [GO:0009834]; shoot system development [GO:0048367]; xylan biosynthetic process [GO:0045492]; xylem and phloem pattern formation [GO:0010051],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity [GO:0015018]; xylosyltransferase activity [GO:0042285]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834] TISSUE SPECIFICITY: Expressed in developing interfascicular fibers and xylem cells in stems and developing secondary xylem in roots. {ECO:0000269|PubMed:20335400}. locus:2115090;,locus:2155533; AT4G36890,AT5G67230 glycosyltransferase Probable glucuronosyltransferase Os06g0687900 (EC 2.4.-.-),Glycosyltransferases (EC 2.4.-.-) (Fragment) Q653F4,A0A0N7KMM2 GT61_ORYSJ,A0A0N7KMM2_ORYSJ Os06g0687900 LOC_Os06g47340 OsJ_22428 P0623A10.33 P0661G04.6,Os06g0687900 OSNPB_060687900 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}.,FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000256|RuleBase:RU363127}. ENOG411DZBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex involved in cytoplasmic mRNA turnover. PAN specifically shortens poly(A) tails of RNA when the poly(A) stretch is bound by polyadenylate-binding protein PAB1. Deadenylation of the 3'-tail to a length that is too short to bind PAB1 induces mRNA decay. May also be involved in post- transcriptional maturation of mRNA poly(A) tails (By similarity) NA NA NA NA NA NA NA ENOG411DZBN MRS2-9,MRS2-8,MRS2-7,MRS2-2,MGT7 Q9LXD4,P0CZ22,Q304A0,Q9FLG2,A0A1P8BF64,A0A1P8BF83,A0A1P8BF71,A0A1P8BFC1,A0A1P8BF76,A0A1P8BFB5,A0A1P8BF59 MRS29_ARATH,MRS2I_ARATH,MRS27_ARATH,MRS22_ARATH,A0A1P8BF64_ARATH,A0A1P8BF83_ARATH,A0A1P8BF71_ARATH,A0A1P8BFC1_ARATH,A0A1P8BF76_ARATH,A0A1P8BFB5_ARATH,A0A1P8BF59_ARATH Putative magnesium transporter MRS2-9,Putative inactive magnesium transporter MRS2-8 (Magnesium Transporter 8) (AtMGT8),Magnesium transporter MRS2-7 (Magnesium Transporter 7) (AtMGT7),Magnesium transporter MRS2-2 (Magnesium Transporter 9) (AtMGT9),Magnesium transporter 7 DISRUPTION PHENOTYPE: Displays plantlets with retarded development under low Mg(2+) concentrations growth conditions. {ECO:0000269|PubMed:19966073}. Homozygotes: WT phenotype under normal growth conditions. Under conditions of magnesium stress (under 50 mM Mg2+) germination is poor and plantlet development is severely retarded.,WT phenotype under normal growth conditions. Under conditions of magnesium stress (under 50 mM Mg2+) germination is poor and plantlet development is severely retarded. Sensitive to limited magnesium-V. Knoop-2009,Complete male gametophyte defective-D. Li-2009 FUNCTION: Putative magnesium transporter.,FUNCTION: Low-affinity magnesium transporter that mediates the influx of magnesium. {ECO:0000269|PubMed:19093971}.,FUNCTION: Low-affinity magnesium transporter that mediates the influx of magnesium. Plays a crucial role in male gametophyte development and male fertility. {ECO:0000269|PubMed:19436262}. MISCELLANEOUS: Has the ability to complement mutants in Salmonella enterica and yeast lacking magnesium transport capability. R-ATH-5223345; 43506,33096,43431,43720,33043,38406,37272,43354,31908,38059,36221 Putative magnesium transporter MRS2-9,Putative inactive magnesium transporter MRS2-8 (Magnesium Transporter 8) (AtMGT8),Magnesium transporter MRS2-7 (Magnesium Transporter 7) (AtMGT7),Magnesium transporter MRS2-2 (Magnesium Transporter 9) (AtMGT9),Magnesium transporter 7 integral component of membrane [GO:0016021]; magnesium ion transmembrane transporter activity [GO:0015095],magnesium ion transmembrane transporter activity [GO:0015095],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; magnesium ion transmembrane transporter activity [GO:0015095],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095]; pollen development [GO:0009555] TISSUE SPECIFICITY: Isoform 1 is expressed in the whole plant. Isoform 4 is expressed only in roots and flowers. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19093971, ECO:0000269|PubMed:19966073}.,TISSUE SPECIFICITY: Expressed in the whole plant but preferentially in the mature anthers. {ECO:0000269|PubMed:11115130, ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19436262, ECO:0000269|PubMed:19966073}. locus:2144746;,locus:2144826;,locus:2174799; AT5G09710,AT5G09720,AT5G09690,AT5G64560 magnesium transporter Magnesium transporter MRS2-I,Os03g0742400 protein (Fragment) Q10D38,Q0DNP6 MRS2I_ORYSJ,Q0DNP6_ORYSJ MRS2-I Os03g0742400 LOC_Os03g53110 OJ1365_D05.9 OsJ_12521,Os03g0742400 Os03g0742400 OSNPB_030742400 FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}. ENOG411DZBA BAM3,BAM1 O23553,Q9LIR6 BAM3_ARATH,BAM1_ARATH Beta-amylase 3, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 8) (Chloroplast beta-amylase) (CT-BMY),Beta-amylase 1, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 7) (Thioredoxin-regulated beta-amylase) (TR-BAMY) DISRUPTION PHENOTYPE: Slightly retarded growth rate and reduced starch breakdown in leaves during the night. {ECO:0000269|PubMed:18390594}.,DISRUPTION PHENOTYPE: Normal growth rate and starch breakdown in leaves during the night. {ECO:0000269|PubMed:18390594}. slightly retarded. Leaves contained undegraded starch at the end of night.,Comparing the level of undegraded leaf starch bam1 bam3 is more severe than that of either bam1 or bam3.,higher level of undegraded leaf starch content than that of bam1 bam3 or bam3 bam4.,Comparing the level of undegraded leaf starch bam3 bam4 is more severe than that of either bam3 or bam4.,No differences in starch or maltose contents compared to wildtype.,Under cold-shock conditions maltose levels remained unchanged compared to wildtype plants. Slow growth; Small rosette; Elevated starch levels in leaves-S. Zeeman-2008 FUNCTION: Beta-amylase activity. No alpha-amylase activity. Involved in cold resistance. Mediates the accumulation of maltose upon freezing stress, thus contributing to the protection of the photosynthetic electron transport chain. Plays a role in the circadian-regulated starch degradation and maltose metabolism in chloroplasts, especially at night. More active on phosphorylated glucan. Interacts directly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:10652124, ECO:0000269|PubMed:16055686, ECO:0000269|PubMed:16297066, ECO:0000269|PubMed:17631522, ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}.,FUNCTION: Beta-amylase activity. Can use p-nitrophenyl maltopentaoside (PNPG5) as substrate only in reduced form. Can play a minor role in the starch degradation and maltose metabolism in chloroplasts during the night. More active on phosphorylated glucan. Interacts directly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:17631522, ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}. ARA:AT4G17090-MONOMER;MetaCyc:AT4G17090-MONOMER;,MetaCyc:AT3G23920-MONOMER; 3.2.1.2; 3.2.1.2 61353,63762 Beta-amylase 3, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 8) (Chloroplast beta-amylase) (CT-BMY),Beta-amylase 1, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 7) (Thioredoxin-regulated beta-amylase) (TR-BAMY) chloroplast stroma [GO:0009570]; amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; maltose biosynthetic process [GO:0000024]; response to cold [GO:0009409]; starch catabolic process [GO:0005983],chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; response to water deprivation [GO:0009414]; starch catabolic process [GO:0005983] TISSUE SPECIFICITY: Expressed in vascular tissue of cotyledons, leaves, petioles, stems, petals, siliques and roots, particularly in phloem, as well as in photosynthetic tissues. {ECO:0000269|PubMed:20153546}.,TISSUE SPECIFICITY: Expressed in leaves, roots, flowers, pollen, and seeds. {ECO:0000269|PubMed:16698902}. locus:2130504;,locus:2076086; AT4G17090,AT3G23920 beta-amylase Beta-amylase 1, chloroplastic (OsBamy1) (EC 3.2.1.2) (4-alpha-D-glucan maltohydrolase),Beta-amylase 2, chloroplastic (OsBamy2) (EC 3.2.1.2) (4-alpha-D-glucan maltohydrolase),Beta-amylase (EC 3.2.1.2) Q9AV88,Q10RZ1,A0A0P0XXP5 BAMY1_ORYSJ,BAMY2_ORYSJ,A0A0P0XXP5_ORYSJ BAMY1 Os10g0465700 LOC_Os10g32810 OSJNBa0006L06.1,BAMY2 Os03g0141200 LOC_Os03g04770 OsJ_09355,Os10g0565200 OSNPB_100565200 FUNCTION: Possesses beta-amylase activity in vitro (PubMed:21512221). May be involved in cold resistance by mediating the accumulation of maltose upon freezing stress, thus contributing to the protection of membranes (Probable). {ECO:0000269|PubMed:21512221, ECO:0000305}. ENOG411DZBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os09g0447500 protein (Putative Cyt-P450 monooxygenase) (cDNA clone:002-168-D04, full insert sequence) Q67UD6 Q67UD6_ORYSJ Os09g0447500 Os09g0447500 OJ1596_C06.21 OSNPB_090447500 P0047B10.3 ENOG411DZBD Q9LM18,Q9C9S2 FB303_ARATH,FB91_ARATH F-box protein At1g22220,F-box protein At1g78100 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 34499,36553 F-box protein At1g22220,F-box protein At1g78100 plasmodesma [GO:0009506]; cytokinin-activated signaling pathway [GO:0009736]; hormone transport [GO:0009914],nucleus [GO:0005634]; plasmodesma [GO:0009506]; acropetal auxin transport [GO:0010541]; basipetal auxin transport [GO:0010540]; cytokinin-activated signaling pathway [GO:0009736]; protein ubiquitination [GO:0016567] locus:2015046;,locus:2194719; AT1G22220,AT1G78100 F-box protein NA NA NA NA NA NA NA ENOG411DZBF CDC5 P92948 CDC5L_ARATH Cell division cycle 5-like protein (Cdc5-like protein) (Atypical R2R3-MYB transcription factor CDC5) (MOS4-associated complex protein 1) (MAC protein 1) (Protein MYB DOMAIN CELL DIVISION CYCLE 5) (AtMYBCD5) DISRUPTION PHENOTYPE: Accelerated cell death. Enhanced susceptibility to virulent and avirulent pathogens. {ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050}. Embryo defective; Preglobular-L.J. Qu-2007 FUNCTION: Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. R-ATH-72163; 95767 Cell division cycle 5-like protein (Cdc5-like protein) (Atypical R2R3-MYB transcription factor CDC5) (MOS4-associated complex protein 1) (MAC protein 1) (Protein MYB DOMAIN CELL DIVISION CYCLE 5) (AtMYBCD5) chloroplast [GO:0009507]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell cycle [GO:0007049]; cell differentiation [GO:0030154]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; DNA repair [GO:0006281]; innate immune response [GO:0045087]; mRNA processing [GO:0006397]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; RNA splicing [GO:0008380]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. locus:2024336; AT1G09770 Cell division cycle Os04g0348300 protein (Fragment),Os04g0348300 protein A0A0P0W8V6,A0A0P0W9C3 A0A0P0W8V6_ORYSJ,A0A0P0W9C3_ORYSJ Os04g0348300 OSNPB_040348300 ENOG411DZBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Ethylene-binding protein-like (Os09g0457900 protein) (cDNA clone:J013098P10, full insert sequence) Q67U00 Q67U00_ORYSJ Os09g0457900 Os09g0457900 B1045B05.13 OSNPB_090457900 ENOG411EJFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABA/WDS induced protein NA NA NA NA NA NA NA ENOG411EJFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3HV Q52K84 Q52K84_ARATH At4g13270 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) 23987 At4g13270 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) integral component of membrane [GO:0016021] locus:2142040; AT4G13270 Late embryogenesis abundant protein Expressed protein (Os03g0696000 protein) (cDNA clone:002-141-E10, full insert sequence) Q10EQ8 Q10EQ8_ORYSJ LOC_Os03g48950 Os03g0696000 OSNPB_030696000 ENOG411EJFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EJFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EJFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EJFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411E0X9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - C2H2 zinc finger protein expressed Os03g0216000 protein (Zinc finger family protein, putative, expressed) (cDNA clone:002-148-B06, full insert sequence) Q10PZ3 Q10PZ3_ORYSJ LOC_Os03g11680 Os03g0216000 OsJ_09918 OSNPB_030216000 ENOG411E0X8 PME8 O23038 PME8_ARATH Probable pectinesterase 8 (PE 8) (EC 3.1.1.11) (Pectin methylesterase 2) (AtPME2) (Pectin methylesterase 8) (AtPME8) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT1G05310-MONOMER; 3.1.1.11 43350 Probable pectinesterase 8 (PE 8) (EC 3.1.1.11) (Pectin methylesterase 2) (AtPME2) (Pectin methylesterase 8) (AtPME8) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2207245; AT1G05310 pectinesterase Pectinesterase (EC 3.1.1.11) A0A0P0VNG3,A0A0P0XD60 A0A0P0VNG3_ORYSJ,A0A0P0XD60_ORYSJ Os02g0688400 OSNPB_020688400,Os08g0206950 OSNPB_080206950 ENOG411E0X7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os09g0400500 protein (cDNA, clone: J100074D03, full insert sequence) Q0J1Z3 Q0J1Z3_ORYSJ Os09g0400500 Os09g0400500 OSNPB_090400500 ENOG411E0X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os02g0665300 protein (Subtilisin-like serine protease) (cDNA clone:J023103I17, full insert sequence) Q6ESH8 Q6ESH8_ORYSJ Os02g0665300 Os02g0665300 OJ1486_E07.2 OsJ_07847 OSNPB_020665300 P0461B08.17 ENOG411E0X5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 16 Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Q7XTP9 Q7XTP9_ORYSJ Os04g0604200 Os04g0604200 OsJ_16057 OSJNBa0041A02.25 OSNPB_040604200 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411E0X4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF642) OSJNBb0091E11.14 protein (Os04g0494600 protein) (cDNA clone:002-173-A05, full insert sequence) Q7XU61 Q7XU61_ORYSJ Os04g0494600 OsJ_15309 OSJNBb0091E11.14 OSNPB_040494600 ENOG411E0X3 PHL8 F4I274 PHL8_ARATH Myb family transcription factor PHL8 (Protein PHR1-LIKE 8) 37896 Myb family transcription factor PHL8 (Protein PHR1-LIKE 8) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2026739; AT1G69580 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E0X2 MED26C,MYH9.6 F4KFC7,A0A1P8BE77 MD26C_ARATH,A0A1P8BE77_ARATH Probable mediator of RNA polymerase II transcription subunit 26c,Transcription elongation factor (TFIIS) family protein FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). May play a role in transcription elongation (By similarity). {ECO:0000250}. 40058,39203 Probable mediator of RNA polymerase II transcription subunit 26c,Transcription elongation factor (TFIIS) family protein cytosol [GO:0005829]; elongin complex [GO:0070449]; translation elongation factor activity [GO:0003746]; regulation of transcription, DNA-templated [GO:0006355]; transcription elongation from RNA polymerase II promoter [GO:0006368],nucleus [GO:0005634]; translation elongation factor activity [GO:0003746] locus:2178173; AT5G09850 Transcription elongation factor Os12g0582600 protein (Fragment),Os11g0166800 protein (Fragment),Os12g0165700 protein (Transcription elongation factor, putative, expressed),Os04g0596850 protein C7JAB3,Q0IUD4,Q2QX87,A0A0P0WED8 C7JAB3_ORYSJ,Q0IUD4_ORYSJ,Q2QX87_ORYSJ,A0A0P0WED8_ORYSJ Os12g0582600 Os12g0582600 OSNPB_120582600,Os11g0166800 OSNPB_110166800,Os12g0165700 LOC_Os12g06850 Os12g0165700 OSNPB_120165700,Os04g0596850 OSNPB_040596850 ENOG411E0X1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA COBRA-like protein NA NA NA NA NA NA NA ENOG411E3HS Q1G3M1 Q1G3M1_ARATH RING/U-box superfamily protein 24886 RING/U-box superfamily protein integral component of membrane [GO:0016021] locus:4010713762; AT3G20395 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E0XN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E0XM F4IV25 F4IV25_ARATH Protein kinase superfamily protein 84706 Protein kinase superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556] locus:2055017; AT2G44830 protein kinase G11A-like Os01g0635500 protein,OSJNBa0079A21.12 protein (Os04g0546300 protein) A2ZVS2,Q0JBA2 A2ZVS2_ORYSJ,Q0JBA2_ORYSJ Os01g0635500 OsJ_02738 OSNPB_010635500,OSJNBa0079A21.12 Os04g0546300 OsJ_15668 OSNPB_040546300 ENOG411E0XK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3475) Os01g0845000 protein (Os01g0845100 protein) (Putative Avr9/Cf-9 rapidly elicited protein 137),Os05g0457600 protein Q5N9N9,Q65XG5 Q5N9N9_ORYSJ,Q65XG5_ORYSJ Os01g0845100 Os01g0845000 OSNPB_010845100 P0446B05.13,OJ1362_D02.2 Os05g0457600 OSNPB_050457600 ENOG411E0XJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPRY NA NA NA NA NA NA NA ENOG411E0XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione peroxidase Glutathione peroxidase Q10L56 Q10L56_ORYSJ Os03g0358100 LOC_Os03g24380 Os03g0358100 OsJ_10908 OSNPB_030358100 ENOG411E0XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum Os03g0281500 protein (Protein kinase, putative, expressed) (cDNA clone:J023010L23, full insert sequence) Q10N60 Q10N60_ORYSJ LOC_Os03g17300 Os03g0281500 OSNPB_030281500 ENOG411E0XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidohydrolase family NA NA NA NA NA NA NA ENOG411E0XF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q7F1U2 Q7F1U2_ORYSJ OJ1167_G06.122 Os07g0676900 OsJ_25567 OSNPB_070676900 ENOG411E0XE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein heavy chain N-terminal region 2 NA NA NA NA NA NA NA ENOG411E0XD BAM4 Q9FM68,F4K4Z1 BAM4_ARATH,F4K4Z1_ARATH Inactive beta-amylase 4, chloroplastic (Inactive beta-amylase 6),Beta-amylase (EC 3.2.1.2) DISRUPTION PHENOTYPE: Slightly retarded growth rate and reduced starch breakdown in leaves during the night. {ECO:0000269|PubMed:18390594}. higher level of undegraded leaf starch content than that of bam1 bam3 or bam3 bam4.,Comparing the level of undegraded leaf starch bam3 bam4 is more severe than that of either bam3 or bam4.,slightly retarded. Leaves contain undegraded starch at the end of night. Semi-dwarf; Elevated starch levels-S. Zeeman-2008 FUNCTION: No alpha-1,4-glucan hydrolase activity, including beta-amylase, alpha-amylase, a-glucosidase or alpha-amyloglucosidase. However, facilitates or regulates starch breakdown, especially at night, by a mechanism involving direct interaction with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}. 3.2.1.2 60117,41828 Inactive beta-amylase 4, chloroplastic (Inactive beta-amylase 6),Beta-amylase (EC 3.2.1.2) chloroplast [GO:0009507]; starch catabolic process [GO:0005983],amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; polysaccharide catabolic process [GO:0000272] TISSUE SPECIFICITY: Preferentially expressed in vascular tissue of cotyledons, leaves, petioles, stems, petals, siliques and roots, particularly in phloem. Also present in root tip. {ECO:0000269|PubMed:20153546}. locus:2162152; AT5G55700 beta-amylase 4 NA NA NA NA NA NA NA ENOG411E0XC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E0XB Q9LII9 GDL54_ARATH GDSL esterase/lipase At3g27950 (EC 3.1.1.-) (Extracellular lipase At3g27950) ARA:AT3G27950-MONOMER; 3.1.1.- 40778 GDSL esterase/lipase At3g27950 (EC 3.1.1.-) (Extracellular lipase At3g27950) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] AT3G27950 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411E0XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0126600 protein,Os10g0565500 protein,Os05g0253700 protein,Os06g0269500 protein A0A0P0VSF8,A0A0N7KS84,A0A0P0WJW3,A0A0P0WV10 A0A0P0VSF8_ORYSJ,A0A0N7KS84_ORYSJ,A0A0P0WJW3_ORYSJ,A0A0P0WV10_ORYSJ Os03g0126600 OSNPB_030126600,Os10g0565500 OSNPB_100565500,Os05g0253700 OSNPB_050253700,Os06g0269500 OSNPB_060269500 ENOG411E0XZ Q94AW9,Q500X1,A8MQZ8 Q94AW9_ARATH,Q500X1_ARATH,A8MQZ8_ARATH At2g25350/F13B15.1 (Expressed protein) (PNAS-3-like protein),At4g32175 (PNAS-3-like protein),PNAS-3-like protein R-ATH-429958;R-ATH-450604;R-ATH-6791226; 26480,26218,23622 At2g25350/F13B15.1 (Expressed protein) (PNAS-3-like protein),At4g32175 (PNAS-3-like protein),PNAS-3-like protein cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; RNA binding [GO:0003723]; CUT catabolic process [GO:0071034]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription [GO:0071049]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; U4 snRNA 3'-end processing [GO:0034475],exosome (RNase complex) [GO:0000178]; RNA binding [GO:0003723] locus:505006271;,locus:504955555; AT2G25355,AT4G32175 Exosome complex Os01g0661400 protein (cDNA clone:J033022G03, full insert sequence),ALM beta-like (Os01g0891400 protein) (cDNA, clone: J065206I07, full insert sequence) Q0JKN6,Q5JLX2 Q0JKN6_ORYSJ,Q5JLX2_ORYSJ Os01g0661400 Os01g0661400 OSNPB_010661400,Os01g0891400 B1078G07.6 OsJ_04370 OSNPB_010891400 ENOG411E0XY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os04g0587500 protein (Fragment) A0A0P0WE19 A0A0P0WE19_ORYSJ Os04g0587500 OSNPB_040587500 ENOG411E0XX Q9C842,Q9SZ82,F4IJB0,F4J921,Q3E6V3,F4J326,F4J920,F4IE28,F4IJA9,F4I7X4,Q3EAW7,F4J5F9 Q9C842_ARATH,Q9SZ82_ARATH,F4IJB0_ARATH,F4J921_ARATH,Q3E6V3_ARATH,F4J326_ARATH,F4J920_ARATH,F4IE28_ARATH,F4IJA9_ARATH,F4I7X4_ARATH,Q3EAW7_ARATH,F4J5F9_ARATH General transcription factor 2-related zinc finger protein (Uncharacterized protein F8D11.16),Uncharacterized protein AT4g09660 (Uncharacterized protein F17A8.10) (Zinc finger MYM-type-like protein),TTF-type zinc finger protein with HAT dimerization domain-containing protein,General transcription factor 2-related zinc finger protein 23204,76930,68942,45275,61792,60097,35925,88961,65631,57439,57950,19612 General transcription factor 2-related zinc finger protein (Uncharacterized protein F8D11.16),Uncharacterized protein AT4g09660 (Uncharacterized protein F17A8.10) (Zinc finger MYM-type-like protein),TTF-type zinc finger protein with HAT dimerization domain-containing protein,General transcription factor 2-related zinc finger protein cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981],cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981],nucleic acid binding [GO:0003676],cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; plasmodesma [GO:0009506]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981],nucleic acid binding [GO:0003676]; protein dimerization activity [GO:0046983],cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; multicellular organism development [GO:0007275] locus:2036700;,locus:2118430;,locus:4515102803;,locus:5019474775;,locus:2829849;,locus:2093847;,locus:2202165;,locus:2033523;,locus:2829839;,locus:5019474771; AT1G42710,AT4G09660,AT2G06541,AT3G31402,AT3G29765,AT3G29450,AT1G19260,AT1G41920,AT3G29763,AT3G30235 hAT dimerisation domain-containing protein Os08g0107650 protein A0A0P0XB10 A0A0P0XB10_ORYSJ Os08g0107650 OSNPB_080107650 ENOG411E0XW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: MYB family transcription factor Os04g0600000 protein Q0JAG7 Q0JAG7_ORYSJ Os04g0600000 Os04g0600000 OSNPB_040600000 ENOG411E0XV DRB1,HYL1 O04492,A0A1P8AQD8 DRB1_ARATH,A0A1P8AQD8_ARATH Double-stranded RNA-binding protein 1 (Protein HYPONASTIC LEAVES 1) (dsRNA-binding protein 1) (AtDRB1),DsRNA-binding domain-like superfamily protein DISRUPTION PHENOTYPE: Short plant, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, altered root gravitropic response, decreased sensitivity to auxin and cytokinin and hypersensitivity to abscisic acid (ABA). Reduction of several miRNA accumulation. {ECO:0000269|PubMed:11148283, ECO:0000269|PubMed:14972688, ECO:0000269|PubMed:16889646}. Altered vegetative morphology and response to hormones,Increased abundance of miRNA precursors. Short hypocotyl; Dwarf; Narrow, upward-bending leaves; Increased branching; Reduced root gravitropism; Small flowers; Twisted siliques; Late flowering; Reduced fertility due to short filaments; Sensitive to ABA; Insensitive to cytokinin-N. Fedoroff-2000 FUNCTION: Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis by assisting DICER-LIKE 1 (DCL1) in the accurate processing from primary miRNAs (pri-miRNAs) to miRNAs in the nucleus. Forms a complex with SERRATE (SE) and DCL1 to promote accurate processing of pri-miRNAs by DCL1. Binds and assist DCL1 for accurate processing of precursor miRNAs (pre-miRNA). Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved with argonaute 1 (AGO1) in the guide strand selection from miRNA duplexes, presumably by directional loading of the miRNA duplex (guide stand and passenger strand) onto the RNA-induced silencing complex (RISC) for passenger strand degradation. Does not participate in sense transgene-induced post-transcriptional gene silencing (S-PTGS). Involved in several plant development aspects and response to hormones through its role in miRNAs processing. {ECO:0000269|PubMed:11148283, ECO:0000269|PubMed:14722360, ECO:0000269|PubMed:14972688, ECO:0000269|PubMed:15821876, ECO:0000269|PubMed:16428603, ECO:0000269|PubMed:16889646, ECO:0000269|PubMed:17337628, ECO:0000269|PubMed:18632569, ECO:0000269|PubMed:19304749, ECO:0000269|PubMed:19861421, ECO:0000269|PubMed:20462493, ECO:0000269|PubMed:20735118}. MISCELLANEOUS: Plants overexpressing HYL1 show decreased stability of transcripts targeted by miRNAs. 45547,30727 Double-stranded RNA-binding protein 1 (Protein HYPONASTIC LEAVES 1) (dsRNA-binding protein 1) (AtDRB1),DsRNA-binding domain-like superfamily protein nuclear dicing body [GO:0010445]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; double-stranded RNA binding [GO:0003725]; miRNA binding [GO:0035198]; ribonuclease III activity [GO:0004525]; leaf proximal/distal pattern formation [GO:0010589]; leaf vascular tissue pattern formation [GO:0010305]; mRNA cleavage involved in gene silencing by miRNA [GO:0035279]; pre-miRNA processing [GO:0031054]; primary miRNA processing [GO:0031053]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; production of ta-siRNAs involved in RNA interference [GO:0010267]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502],double-stranded RNA binding [GO:0003725] TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, stems, roots, flowers and siliques. {ECO:0000269|PubMed:11148283, ECO:0000269|PubMed:16889646}. locus:2024407; AT1G09700 dsRNA-binding protein Double-stranded RNA-binding protein 7 (dsRNA-binding protein 7),Double-stranded RNA-binding protein 8 (dsRNA-binding protein 1) (OsDRB1) (dsRNA-binding protein 8),Double-stranded RNA-binding protein 3 (dsRNA-binding protein 3) Q0IV63,Q0IQN6,Q0DJA3 DRB7_ORYSJ,DRB8_ORYSJ,DRB3_ORYSJ DRB7 Os11g0109900 LOC_Os11g01869,DRB8 DRB1 Os12g0109900 LOC_Os12g01916,DRB3 Os05g0307400 LOC_Os05g24160 FUNCTION: Binds double-stranded RNA. {ECO:0000250}.,FUNCTION: Binds double-stranded RNA. {ECO:0000269|PubMed:15821876}. ENOG411E0XU WIN1 Q9XI33 WIN1_ARATH Ethylene-responsive transcription factor WIN1 (Protein SHINE 1) (Protein WAX INDUCER 1) FUNCTION: Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. 21696 Ethylene-responsive transcription factor WIN1 (Protein SHINE 1) (Protein WAX INDUCER 1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cutin biosynthetic process [GO:0010143]; ethylene-activated signaling pathway [GO:0009873]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351]; wax metabolic process [GO:0010166] DEVELOPMENTAL STAGE: Detected in sepals of very young closed buds. Later, expressed in sepals and petals veins and epidermis, as well as in developing gynoecium but not in stamens. At anthesis, confined to the gynoecium, commenced in the anther, and slightly expressed in the anther filament. When petals and sepals withered, strong expression at the bottom of the silique, in the abscission zone, and in the pedicel region below it. At silique maturity, detected in the same region but only at the nectaries. {ECO:0000269|PubMed:15319479}. TISSUE SPECIFICITY: Expressed in aerial organs, mostly in flowers, and in roots. Also observed at the branch points of pedicels of most young flowers, and in a patchy pattern in roots of mature plants and very young leaves in the rosette, including support cells of their trichomes. {ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. locus:2037698; AT1G15360 transcription factor Os06g0604000 protein,AP domain containing transcription factor (AP2-containing transcription factor) (Os06g0604000 protein) (Putative ethylene response factor 1) (cDNA clone:006-209-A04, full insert sequence),Os02g0202000 protein (Fragment) Q0DB45,Q69XI7,A0A0P0VG32 Q0DB45_ORYSJ,Q69XI7_ORYSJ,A0A0P0VG32_ORYSJ Os06g0604000 Os06g0604000 OSNPB_060604000,P0486H12.41-1 Os06g0604000 OsJ_21903 OSNPB_060604000,Os02g0202000 OSNPB_020202000 ENOG411E0XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP dependent DNA ligase C terminal region NA NA NA NA NA NA NA ENOG411E0XS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ammonium transporter 1 member NA NA NA NA NA NA NA ENOG411E0XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E0XQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Os01g0207400 protein (Fragment) Q0JPR4 Q0JPR4_ORYSJ Os01g0207400 Os01g0207400 OSNPB_010207400 ENOG411E0XP PME54 Q3E989,A0A1P8BCQ9 PME54_ARATH,A0A1P8BCQ9_ARATH Probable pectinesterase/pectinesterase inhibitor 54 [Includes: Pectinesterase inhibitor 54 (Pectin methylesterase inhibitor 54); Pectinesterase 54 (PE 54) (EC 3.1.1.11) (Pectin methylesterase 54) (AtPME54)],Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}.,FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589, ECO:0000256|SAAS:SAAS00560367}. ARA:AT5G20860-MONOMER; 3.1.1.11 56699,59463 Probable pectinesterase/pectinesterase inhibitor 54 [Includes: Pectinesterase inhibitor 54 (Pectin methylesterase inhibitor 54); Pectinesterase 54 (PE 54) (EC 3.1.1.11) (Pectin methylesterase 54) (AtPME54)],Pectinesterase (EC 3.1.1.11) cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; enzyme inhibitor activity [GO:0004857]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2147097; AT5G20860 pectinesterase NA NA NA NA NA NA NA ENOG411E60A UCC3 Q96316 BCB3_ARATH Uclacyanin-3 (Uclacyanin-III) (Blue copper-binding protein III) (BCB III) (Phytocyanin 3) FUNCTION: Probably acts as an electron carrier involved in oxygen activation and/or lignin formation. {ECO:0000250}. 22521 Uclacyanin-3 (Uclacyanin-III) (Blue copper-binding protein III) (BCB III) (Phytocyanin 3) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2081957; AT3G60280 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E60C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E60E Q8L9W8 Q8L9W8_ARATH At5g24890 (Stress response NST1-like protein) 26577 At5g24890 (Stress response NST1-like protein) locus:2149413; AT5G24890 Inherit from KOG: Rna binding protein NA NA NA NA NA NA NA ENOG411E60F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0158900 protein (cDNA clone:J013001C06, full insert sequence),Os11g0130500 protein,F-box domain containing protein, expressed (Os12g0127400 protein),Os04g0651600 protein,Os07g0160500 protein,Os07g0163200 protein (Fragment),Os07g0158900 protein (Fragment),Os04g0675700 protein,Os07g0161500 protein Q6Z133,C7J8M0,Q2QY97,A0A0P0WFN2,A0A0P0X2K4,A0A0P0X2X7,A0A0P0X2R2,A0A0P0WGE3,A0A0P0X2S5 Q6Z133_ORYSJ,C7J8M0_ORYSJ,Q2QY97_ORYSJ,A0A0P0WFN2_ORYSJ,A0A0P0X2K4_ORYSJ,A0A0P0X2X7_ORYSJ,A0A0P0X2R2_ORYSJ,A0A0P0WGE3_ORYSJ,A0A0P0X2S5_ORYSJ Os07g0158900 Os07g0158900 OSNPB_070158900 P0455F03.30,Os11g0130500 OSNPB_110130500,Os12g0127400 LOC_Os12g03390 Os12g0127400 OsJ_35088 OSNPB_120127400,Os04g0651600 OSNPB_040651600,Os07g0160500 OSNPB_070160500,Os07g0163200 OSNPB_070163200,Os07g0158900 OSNPB_070158900,Os04g0675700 OSNPB_040675700,Os07g0161500 OSNPB_070161500 ENOG411E60I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Plant thionin family protein precursor Os06g0509900 protein (Putative thionin Osthi1),Os06g0517700 protein (Fragment) Q5Z4W6,A0A0P0WX99 Q5Z4W6_ORYSJ,A0A0P0WX99_ORYSJ OSJNBb0071G09.18 Os06g0509900 OSNPB_060509900,Os06g0517700 OSNPB_060517700 ENOG411E60H MHJ24.11 A8MS32,Q93Z49,Q9C787 A8MS32_ARATH,Q93Z49_ARATH,Q9C787_ARATH AT5G64130 protein (cAMP-regulated phosphoprotein 19-related protein),AT5g64130/MHJ24_11 (cAMP-regulated phosphoprotein 19-related protein),Uncharacterized protein At1g69510 (Uncharacterized protein F10D13_16) (cAMP-regulated phosphoprotein 19-related protein) 15143,12299,15096 AT5G64130 protein (cAMP-regulated phosphoprotein 19-related protein),AT5g64130/MHJ24_11 (cAMP-regulated phosphoprotein 19-related protein),Uncharacterized protein At1g69510 (Uncharacterized protein F10D13_16) (cAMP-regulated phosphoprotein 19-related protein) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; protein phosphatase inhibitor activity [GO:0004864]; negative regulation of protein dephosphorylation [GO:0035308],cytoplasm [GO:0005737]; protein phosphatase inhibitor activity [GO:0004864]; negative regulation of protein dephosphorylation [GO:0035308] locus:2164376;,locus:2007191; AT5G64130,AT1G69510 cAMP-regulated phosphoprotein/endosulfine conserved region Os01g0664500 protein (cDNA clone:001-027-E11, full insert sequence) (cDNA clone:J023034B10, full insert sequence),Os01g0249300 protein (Putative negatively light-regulated protein) (cDNA clone:001-038-G04, full insert sequence),Os05g0566600 protein (Fragment) Q5SN58,Q9LIU9,A0A0P0WQW5 Q5SN58_ORYSJ,Q9LIU9_ORYSJ,A0A0P0WQW5_ORYSJ P0003E08.12-1 Os01g0664500 OsJ_02919 OSNPB_010664500,P0434D08.2-1 P0034C11.35-1 Os01g0249300 OsJ_01107 OSNPB_010249300,Os05g0566600 OSNPB_050566600 ENOG411E60K rps14 Q9SMX4 Q9SMX4_ARATH At2g34520 (Mitochondrial ribosomal protein S14) (Ribosomal protein S14) 18740 At2g34520 (Mitochondrial ribosomal protein S14) (Ribosomal protein S14) ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2062310; AT2G34520 Ribosomal protein S14 NA NA NA NA NA NA NA ENOG411E60J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: epidermal patterning factor-like protein Os11g0581700 protein C7J8G1 C7J8G1_ORYSJ Os11g0581700 OSNPB_110581700 ENOG411E60N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 1U1 (OsCASPL1U1),CASP-like protein Q2R0D4,A0A0P0Y571 CSPLI_ORYSJ,A0A0P0Y571_ORYSJ Os11g0649400 LOC_Os11g42940 OsJ_01636,Os11g0649400 OSNPB_110649400 ENOG411E60Q Q9C8T5 Q9C8T5_ARATH Uncharacterized protein At1g63310 (Uncharacterized protein At1g63310/F9N12_7) (Uncharacterized protein F9N12.7) 17201 Uncharacterized protein At1g63310 (Uncharacterized protein At1g63310/F9N12_7) (Uncharacterized protein F9N12.7) locus:2038436; AT1G63310 BEST Arabidopsis thaliana protein match is oxidoreductase acting on NADH or NADPH (TAIR AT1G75260.1) NA NA NA NA NA NA NA ENOG411E60P EMB3006 Q8LAF5 Q8LAF5_ARATH At4g19350 (Embryo defective 3006) (Uncharacterized protein At4g19350/T5K18_130) Embryo defective; Preglobular / Globular-D. Meinke-2004 20542 At4g19350 (Embryo defective 3006) (Uncharacterized protein At4g19350/T5K18_130) locus:2140361; AT4G19350 NA Os08g0162500 protein (cDNA clone:J033050M07, full insert sequence) Q0J7U2 Q0J7U2_ORYSJ Os08g0162500 Os08g0162500 OsJ_26143 OSNPB_080162500 ENOG411E60S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E60R Q7Y233,A0A1I9LSU7 Q7Y233_ARATH,A0A1I9LSU7_ARATH At3g51940 (Oxidoreductase/transition metal ion-binding protein),Oxidoreductase/transition metal ion-binding protein 52262,52756 At3g51940 (Oxidoreductase/transition metal ion-binding protein),Oxidoreductase/transition metal ion-binding protein locus:2083725; AT3G51940 NA NA NA NA NA NA NA NA ENOG411E60U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF581 domain containing protein expressed Os06g0223700 protein (cDNA clone:J023045L17, full insert sequence) Q67UI7 Q67UI7_ORYSJ Os06g0223700 Os06g0223700 OsJ_20644 OSNPB_060223700 P0638H11.19 ENOG411E60T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome c oxidase subunit NA NA NA NA NA NA NA ENOG411E60W Q8LC33 Q8LC33_ARATH At5g63135 (Transcription termination factor) 11232 At5g63135 (Transcription termination factor) anaphase-promoting complex [GO:0005680]; regulation of mitotic cell cycle spindle assembly checkpoint [GO:0090266] locus:505006711; AT5G63135 NA Os02g0593400 protein Q0DZX4 Q0DZX4_ORYSJ Os02g0593400 Os02g0593400 OsJ_07346 OSNPB_020593400 ENOG411E60V RAS1,ZW2 O04515,Q9SLV1 O04515_ARATH,Q9SLV1_ARATH At1g09950 (F21M12.34 protein) (RESPONSE TO ABA AND SALT 1) (Uncharacterized protein At1g09950),At1g58330 (F19C14.6 protein) (Transcription factor-like protein) (ZW2 protein) 26094,25938 At1g09950 (F21M12.34 protein) (RESPONSE TO ABA AND SALT 1) (Uncharacterized protein At1g09950),At1g58330 (F19C14.6 protein) (Transcription factor-like protein) (ZW2 protein) sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351] locus:2024412;,locus:2016620; AT1G09950,AT1G58330 NA NA NA NA NA NA NA NA ENOG411E60Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) OSJNBa0044M19.15 protein (OSJNBa0053B21.1 protein) (Os04g0387600 protein) (cDNA clone:001-122-D12, full insert sequence) Q7XLP1 Q7XLP1_ORYSJ Os04g0387600 OsJ_14571 OSJNBa0044M19.15 OSJNBa0053B21.1 OSNPB_040387600 ENOG411E60X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E60Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E603 Q9C8W7 Q9C8W7_ARATH At1g71950 (Proteinase inhibitor, propeptide) (Uncharacterized protein At1g71950) (Uncharacterized protein F17M19.10) 14852 At1g71950 (Proteinase inhibitor, propeptide) (Uncharacterized protein At1g71950) (Uncharacterized protein F17M19.10) cytosol [GO:0005829]; plasma membrane [GO:0005886]; endopeptidase inhibitor activity [GO:0004866]; serine-type endopeptidase activity [GO:0004252] locus:2016079; AT1G71950 Peptidase inhibitor I9 Os05g0432700 protein (Fragment) A0A0P0WMW0 A0A0P0WMW0_ORYSJ Os05g0432700 OSNPB_050432700 ENOG411E605 F14G6.4 Q9S842 Q9S842_ARATH AT1G76440 protein (HSP20-like chaperones superfamily protein) (Uncharacterized protein At1g76440) (Uncharacterized protein F14G6.4) (Uncharacterized protein F15M4.6) 15526 AT1G76440 protein (HSP20-like chaperones superfamily protein) (Uncharacterized protein At1g76440) (Uncharacterized protein F14G6.4) (Uncharacterized protein F15M4.6) locus:2011696; AT1G76440 CONTAINS InterPro DOMAIN s Heat shock protein Hsp20 (InterPro IPR002068) HSP20-like chaperone (InterPro IPR008978) NA NA NA NA NA NA NA ENOG411E604 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Transcription factor ILI1 (OsILI1) (Basic helix-loop-helix protein 154) (OsbHLH154) (Protein INCREASED LEAF INCLINATION 1) (bHLH transcription factor bHLH154),Transcription factor ILI2 (OsILI2) (Protein INCREASED LEAF INCLINATION 2) Q7X742,Q2R1J3 ILI1_ORYSJ,ILI2_ORYSJ BHLH154 ILI1 Os04g0641700 LOC_Os04g54900 OsJ_16370 OSJNBa0063C18.7 OSJNBb0079B02.12,ILI2 LOC_Os11g39000 Os11g0603000 FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.,FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. MISCELLANEOUS: Gain-of-function mutants ili1-D (T-DNA tagging) show increased lamina joint inclination and hypersensitivity to brassinosteroid. {ECO:0000305|PubMed:20009022}. ENOG411E606 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os07g0588600 protein (Putative zinc finger transcription factor ZFP2),C2H2-type zinc finger transcription factor (Os07g0588700 protein) (Putative zinc-finger protein 1) Q7EZ27,Q84Z14 Q7EZ27_ORYSJ,Q84Z14_ORYSJ Os07g0588600 OsJ_24939 OSJNBb0005G07.119 OSNPB_070588600,ZFP39 Os07g0588700 OSJNBb0005G07.120 OSNPB_070588700 ENOG411E3HC F5K20_340 Q9LCZ9,A0A1I9LQ94 Q9LCZ9_ARATH,A0A1I9LQ94_ARATH PAR1 protein (Photoassimilate-responsive protein PAR-1b-like protein),PAR1 protein 19110,25674 PAR1 protein (Photoassimilate-responsive protein PAR-1b-like protein),PAR1 protein locus:2084495; AT3G54040 PAR1 protein NA NA NA NA NA NA NA ENOG411EC68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF894 NA NA NA NA NA NA NA ENOG411EC63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L1p/L10e family NA NA NA NA NA NA NA ENOG411EC60 Q5XV90,F4HSB6,B3H6G3 Q5XV90_ARATH,F4HSB6_ARATH,B3H6G3_ARATH Late embryogenesis abundant hydroxyproline-rich glycoprotein family protein 28837,32327,29659 Late embryogenesis abundant hydroxyproline-rich glycoprotein family protein integral component of membrane [GO:0016021] locus:2125093;,locus:4515102487; AT4G01110,AT1G01453 NA NA NA NA NA NA NA NA ENOG411EC66 Q9C937 Q9C937_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 36199-37309) ARA:AT1G52810-MONOMER; 32950 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 36199-37309) oxidoreductase activity [GO:0016491] locus:2011586; AT1G52810 Inherit from KOG: oxidoreductase 2OG-Fe(II) oxygenase family protein NA NA NA NA NA NA NA ENOG411EC67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRAF-type zinc finger NA NA NA NA NA NA NA ENOG411EC64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein 12-like NA NA NA NA NA NA NA ENOG411EC6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein Os08g0197100 protein (cDNA clone:002-172-G11, full insert sequence),Os08g0197050 protein,Os08g0197000 protein Q6Z062,B9FZH7,Q6Z064 Q6Z062_ORYSJ,B9FZH7_ORYSJ,Q6Z064_ORYSJ Os08g0197100 OSNPB_080197100 P0035F08.42 P0412D08.20,Os08g0197050 OsJ_26350 OSNPB_080197050,Os08g0197000 Os08g0197000 OSNPB_080197000 P0035F08.40 P0412D08.18 ENOG411EC6Q Q9XI72 CSPL2_ARATH CASP-like protein 1A1 (AtCASPL1A1) 22403 CASP-like protein 1A1 (AtCASPL1A1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] DEVELOPMENTAL STAGE: In the root endodermis, expressed at a late developmental stage, coinciding with the appearance of metaxylem vessels. In 10-day-old roots, reduced levels in proximity to the hypocotyl and in endodermal cells overlaying lateral root primordia. {ECO:0000269|PubMed:24920445}. TISSUE SPECIFICITY: Expressed in the root endodermis. {ECO:0000269|PubMed:24920445}. locus:2035791; AT1G14160 CASP-like protein NA NA NA NA NA NA NA ENOG411EC6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP NA NA NA NA NA NA NA ENOG411EC6T GSTU12 Q6NMS0 GSTUC_ARATH Glutathione S-transferase U12 (AtGSTU12) (EC 2.5.1.18) (GST class-tau member 12) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G69920-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 27923 Glutathione S-transferase U12 (AtGSTU12) (EC 2.5.1.18) (GST class-tau member 12) cytoplasm [GO:0005737]; nucleus [GO:0005634]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2196744; AT1G69920 Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EC6U Q3E8J4 Y5168_ARATH Probably inactive receptor-like protein kinase At5g41680 40290 Probably inactive receptor-like protein kinase At5g41680 ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2160432; AT5G41680 STYKc NA NA NA NA NA NA NA ENOG411EC6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411EC6N SUGTL4,SUGTL3 Q9SCW7,Q4F7G0,C0Z2D9,A8MR77,A0A1P8APM7 ERDL1_ARATH,ERDL2_ARATH,C0Z2D9_ARATH,A8MR77_ARATH,A0A1P8APM7_ARATH Sugar transporter ERD6-like 1 (Sugar transporter-like protein 4),Sugar transporter ERD6-like 2 (Sugar transporter-like protein 3),AT1G08900 protein (Major facilitator superfamily protein),Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 50966,51053,48024,50201,46560 Sugar transporter ERD6-like 1 (Sugar transporter-like protein 4),Sugar transporter ERD6-like 2 (Sugar transporter-like protein 3),AT1G08900 protein (Major facilitator superfamily protein),Major facilitator superfamily protein chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2036039;,locus:2036009; AT1G08890,AT1G08900 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EC6B CHS1,CHL1 F4I902,Q9LUJ8 CHS1_ARATH,CHL1_ARATH Disease resistance protein CHS1 (Protein CHILLING SENSITIVE 1),Disease resistance protein CHL1 (Protein CHILLING SENSITIVE 1-LIKE 1) (CHS1-LIKE 1) DISRUPTION PHENOTYPE: RNAi lines display chilling sensitivity. Massive necrotic response to virulent Pseudomonas syringae pv. tomato infection, but normal bacterial proliferation. {ECO:0000269|PubMed:23617639}. FUNCTION: Confers resistance to low temperatures by limiting chloroplast damage and cell death, thus maintaining growth homeostasis (PubMed:16667557, PubMed:23617639, PubMed:23651299). Regulates steryl-esters and sterols accumulation (PubMed:16667557). Limits leaf necrosis associated with virulent bacterial infection (e.g. Pseudomonas syringae pv. tomato DC3000) (PubMed:23617639). {ECO:0000269|PubMed:16667557, ECO:0000269|PubMed:23617639, ECO:0000269|PubMed:23651299}.,FUNCTION: Confers resistance to low temperatures by limiting chloroplast damage and cell death, thus maintaining growth homeostasis. {ECO:0000269|PubMed:23617639}. 47577,51655 Disease resistance protein CHS1 (Protein CHILLING SENSITIVE 1),Disease resistance protein CHL1 (Protein CHILLING SENSITIVE 1-LIKE 1) (CHS1-LIKE 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ADP binding [GO:0043531]; borate transport [GO:0046713]; defense response [GO:0006952]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; ADP binding [GO:0043531]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Mostly expressed in leaves and flowers (mainly in sepals), and, at a lower intensity, in stems (PubMed:23617639, PubMed:23651299). Present at low levels in roots and seeds (PubMed:23617639). {ECO:0000269|PubMed:23617639, ECO:0000269|PubMed:23651299}.,TISSUE SPECIFICITY: Mostly expressed in leaves, stems and roots, and, to a lower extent, in flowers and siliques. {ECO:0000269|PubMed:23617639}. locus:2007873;,locus:2174915; AT1G17610,AT5G40090 NB-ARC domain NA NA NA NA NA NA NA ENOG411EC6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411EC6G ROPGAP4 Q9CAX8 RGAP4_ARATH Rho GTPase-activating protein 4 (Rho-type GTPase-activating protein 4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased sensitivity to stresses induced by oxygen deprivation. {ECO:0000269|PubMed:12065837}. FUNCTION: Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Acts as negative feedback regulator in tolerance to oxygen deprivation which requires ARAC4/ROP2. {ECO:0000269|PubMed:12065837}. 48750 Rho GTPase-activating protein 4 (Rho-type GTPase-activating protein 4) GTPase activator activity [GO:0005096]; response to anoxia [GO:0034059]; signal transduction [GO:0007165] locus:2080762; AT3G11490 PBD NA NA NA NA NA NA NA ENOG411EC6D DOF1.8 Q84JQ8 DOF18_ARATH Dof zinc finger protein DOF1.8 (AtDOF1.8) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 37878 Dof zinc finger protein DOF1.8 (AtDOF1.8) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2019499; AT1G64620 Dof domain zinc finger NA NA NA NA NA NA NA ENOG411DTJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin assembly protein Os02g0175700 protein (Synaptosomal-associated protein 91-like) (cDNA clone:J023023L17, full insert sequence),Os06g0661400 protein Q6EUQ6,A0A0P0WZI5 Q6EUQ6_ORYSJ,A0A0P0WZI5_ORYSJ Os02g0175700 OJ1077_E05.14 OsJ_05586 OSNPB_020175700,Os06g0661400 OSNPB_060661400 ENOG411E977 AAP5 Q8GUM3 AAP5_ARATH Amino acid permease 5 (Amino acid transporter AAP5) DISRUPTION PHENOTYPE: No visible phenotype, but decreased uptake of L-arginine and L-lysine. {ECO:0000269|PubMed:18681934}. FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine. {ECO:0000269|PubMed:18681934, ECO:0000269|PubMed:7608199}. MISCELLANEOUS: Basic amino acids are transported in their fully ionized form. 52538 Amino acid permease 5 (Amino acid transporter AAP5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; basic amino acid transmembrane transporter activity [GO:0015174]; symporter activity [GO:0015293]; arginine transport [GO:0015809]; basic amino acid transport [GO:0015802] DEVELOPMENTAL STAGE: High expression in source leaves, but almost undetected in sink leaves. {ECO:0000269|PubMed:7608199}. TISSUE SPECIFICITY: Expressed in leaves, stems, roots, siliques and flowers. {ECO:0000269|PubMed:7608199}. locus:2205876; AT1G44100 amino acid transmembrane transporter basic amino acid transmembrane transporter NA NA NA NA NA NA NA ENOG411E976 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E975 OPT9,OPT6 Q9FJD2,Q9T095 OPT9_ARATH,OPT6_ARATH Oligopeptide transporter 9 (AtOPT9),Oligopeptide transporter 6 (AtOPT6) FUNCTION: May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. {ECO:0000250, ECO:0000269|PubMed:11788749}.,FUNCTION: Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. Also involved in transport of glutathione derivatives and metal complexes, and may be involved in stress resistance. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:15247401}. 83571,82361 Oligopeptide transporter 9 (AtOPT9),Oligopeptide transporter 6 (AtOPT6) integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; oligopeptide transmembrane transporter activity [GO:0035673]; oligopeptide transporter activity [GO:0015198]; protein transport [GO:0015031],integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; oligopeptide transmembrane transporter activity [GO:0035673]; protein transport [GO:0015031] DEVELOPMENTAL STAGE: In young embryos, transient expression in the procambium and, at later stage, expression over the whole surface of the embryo and in the inner tegument, in the area adjacent to the micropyle. {ECO:0000269|PubMed:15247401}. TISSUE SPECIFICITY: Expressed in flowers and roots, and at a low level in leaves and stems. Detected in the cambial zone of the vascular bundles and in the region of lateral root initiation. Low expression in the vascular network of the petals and high in the stamen filaments and the gynoecium. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:15247401}. locus:2168616;,locus:2137727; AT5G53510,AT4G27730 at5g53510 (e 0.0) atopt9 opt9 atopt9 (arabidopsis thaliana oligopeptide transporter 9) NA NA NA NA NA NA NA ENOG411E974 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os07g0582500 protein (Fragment) A0A0P0X7V4 A0A0P0X7V4_ORYSJ Os07g0582500 OSNPB_070582500 ENOG411E973 CRK21,CRK24 Q3E9X6,O65483,A0A1P8B3K0,A0A1P8B3I8 CRK21_ARATH,CRK24_ARATH,A0A1P8B3K0_ARATH,A0A1P8B3I8_ARATH Cysteine-rich receptor-like protein kinase 21 (Cysteine-rich RLK21) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 24 (Cysteine-rich RLK24) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 24 2.7.11.- 76859,71783,57251,59544 Cysteine-rich receptor-like protein kinase 21 (Cysteine-rich RLK21) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 24 (Cysteine-rich RLK24) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 24 integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2121706; AT4G23290,AT4G23320 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E972 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kinesin family member NA NA NA NA NA NA NA ENOG411E971 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411E979 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA (Uracil-5-)-methyltransferase NA NA NA NA NA NA NA ENOG411E978 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E97W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PAL Os12g0461050 protein A0A0P0Y9T5 A0A0P0Y9T5_ORYSJ Os12g0461050 OSNPB_120461050 ENOG411E97V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1929) NA NA NA NA NA NA NA ENOG411E97U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E97T DHNAT2 Q9FI76,Q3E8E1 DNAT2_ARATH,Q3E8E1_ARATH 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 2 (AtDHNAT2) (DHNA-CoA thioesterase 2) (EC 3.1.2.-),Thioesterase superfamily protein DISRUPTION PHENOTYPE: Reduced DHNA-CoA thioesterase activity and phylloquinone content. {ECO:0000269|PubMed:22372525}. FUNCTION: Catalyzes the hydrolysis of the thioester bond of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) in peroxisomes, a necessary step to form the naphthoquinone ring of phylloquinone (vitamin K(1)). Displayed also slight thioesterase activity towards benzoyl-CoA. Is not active on phenylacetyl-CoA, succinyl-CoA and palmitoyl-CoA thioesters. {ECO:0000269|PubMed:22372525}. MISCELLANEOUS: May originate from a horizontal gene transfer with a bacterial species of the Lactobacillales order. {ECO:0000303|PubMed:22372525}. PATHWAY: Cofactor biosynthesis; phylloquinone biosynthesis. {ECO:0000305|PubMed:22372525}.; PATHWAY: Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 7/7. {ECO:0000305|PubMed:22372525}. ARA:AT5G48950-MONOMER;MetaCyc:AT5G48950-MONOMER; 3.1.2.- 17063,13692 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 2 (AtDHNAT2) (DHNA-CoA thioesterase 2) (EC 3.1.2.-),Thioesterase superfamily protein peroxisome [GO:0005777]; hydrolase activity [GO:0016787]; phylloquinone biosynthetic process [GO:0042372]; protein homotetramerization [GO:0051289] locus:2154354; AT5G48950 thioesterase family NA NA NA NA NA NA NA ENOG411E97S BAHD1,BIA1 Q9FI40,O23393 BAHD1_ARATH,BIA1_ARATH BAHD acyltransferase At5g47980 (EC 2.3.1.-),BAHD acyltransferase BIA1 (EC 2.3.1.-) (Protein ABNORMAL SHOOT 1) (Protein BRASSINOSTEROID INACTIVATOR 1) FUNCTION: Probably involved in the modification of desaturated thalian-diol.,FUNCTION: Monitors brassinosteroids (BR) responses and homeostasis, particularly in the root and hypocotyl in darkness (PubMed:22956280, PubMed:22544867). Promotes flavonoid biosynthesis (PubMed:22956280). {ECO:0000269|PubMed:22544867, ECO:0000269|PubMed:22956280}. MISCELLANEOUS: Constitutes with three contiguous genes an operon-like gene cluster that is involved in the thalianol pathway. ARA:AT5G47980-MONOMER;,ARA:AT4G15400-MONOMER; 2.3.1.- 48521,48023 BAHD acyltransferase At5g47980 (EC 2.3.1.-),BAHD acyltransferase BIA1 (EC 2.3.1.-) (Protein ABNORMAL SHOOT 1) (Protein BRASSINOSTEROID INACTIVATOR 1) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],cytosol [GO:0005829]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; brassinosteroid homeostasis [GO:0010268]; brassinosteroid mediated signaling pathway [GO:0009742]; brassinosteroid metabolic process [GO:0016131]; regulation of brassinosteroid biosynthetic process [GO:0010422]; regulation of flavonoid biosynthetic process [GO:0009962]; response to absence of light [GO:0009646]; response to brassinosteroid [GO:0009741] TISSUE SPECIFICITY: Expressed primarily in the root epidermis. {ECO:0000269|PubMed:18356490}.,TISSUE SPECIFICITY: Mostly expressed in roots (particularly in the root elongation zone), and, to a lower extent, in seedling, leaves (especially in hydathodes), siliques (e.g. in developing seeds) and flowers. {ECO:0000269|PubMed:22544867, ECO:0000269|PubMed:22956280}. locus:2152763;,locus:2130075; AT5G47980,AT4G15400 transferase family NA NA NA NA NA NA NA ENOG411E97R F4JV39 F4JV39_ARATH RING/FYVE/PHD zinc finger superfamily protein R-ATH-901032; 98873 RING/FYVE/PHD zinc finger superfamily protein integral component of endoplasmic reticulum membrane [GO:0030176]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; zinc ion binding [GO:0008270]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2125632; AT4G32670 Inherit from KOG: (Membrane-Associated Ring finger (C3HC4)) NA NA NA NA NA NA NA ENOG411E97Q Q9SSD3,A0A1P8AP84,F4HQF9,F4HQF8 Q9SSD3_ARATH,A0A1P8AP84_ARATH,F4HQF9_ARATH,F4HQF8_ARATH F18B13.13 protein (Ubiquitin system component Cue) (Uncharacterized protein At1g80040),Ubiquitin system component Cue 27442,19476,19560,20680 F18B13.13 protein (Ubiquitin system component Cue) (Uncharacterized protein At1g80040),Ubiquitin system component Cue locus:2016304; AT1G80040 NA NA NA NA NA NA NA NA ENOG411E97P Q9LSU8,Q9M9T0,Q7X7A9,F4I7F7 FB326_ARATH,FB8_ARATH,FB4_ARATH,F4I7F7_ARATH Probable F-box protein At3g25550,Probable F-box protein At1g14315,F-box protein At1g11270,F-box and associated interaction domains-containing protein 21069,32085,35682,25526 Probable F-box protein At3g25550,Probable F-box protein At1g14315,F-box protein At1g11270,F-box and associated interaction domains-containing protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],heat acclimation [GO:0010286] locus:2094443;,locus:2202099; AT3G25550,AT1G14315,AT1G11270 FBOX Os03g0366350 protein A0A0P0VXS8 A0A0P0VXS8_ORYSJ Os03g0366350 OSNPB_030366350 ENOG411E97Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411E97X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase At3g47570-like NA NA NA NA NA NA NA ENOG411E97G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411E97F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411E97E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold HSR203J, putative, expressed (Os11g0138900 protein) (cDNA clone:001-028-B01, full insert sequence) (cDNA clone:006-206-B11, full insert sequence),Cell death associated protein, putative, expressed (Os12g0135800 protein) (cDNA clone:006-207-G09, full insert sequence),Os12g0135500 protein Q2RAT1,Q2QY19,A0A0P0Y6L9 Q2RAT1_ORYSJ,Q2QY19_ORYSJ,A0A0P0Y6L9_ORYSJ Os11g0138900 LOC_Os11g04350 Os11g0138900 OsJ_35148 OSNPB_110138900,Os12g0135800 LOC_Os12g04150 OSNPB_120135800,Os12g0135500 OSNPB_120135500 ENOG411E97D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0333100 protein Q6YTQ8 Q6YTQ8_ORYSJ Os08g0333100 Os08g0333100 OJ1224_G08.25 OSJNBa0030G18.8 OSNPB_080333100 ENOG411E97C UGT72C1 O23205 U72C1_ARATH UDP-glycosyltransferase 72C1 (EC 2.4.1.-) ARA:AT4G36770-MONOMER; 2.4.1.- 50814 UDP-glycosyltransferase 72C1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2115275; AT4G36770 UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411E97B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411E97A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E97M Q9SRQ5 Y3351_ARATH BTB/POZ domain-containing protein At3g03510 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 58142 BTB/POZ domain-containing protein At3g03510 protein ubiquitination [GO:0016567] AT3G03510 phototropic-responsive NPH3 family protein NA NA NA NA NA NA NA ENOG411E97K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E97J AIG2LB,AIG2LA,AIG2L Q9FIX1,Q9FIX2,A0A1P8BBU1 AIGLB_ARATH,AIGLA_ARATH,A0A1P8BBU1_ARATH AIG2-like protein B (EC 2.3.2.-) (Avirulence-induced gene 2-like protein B) (Putative gamma-glutamylcyclotransferase),AIG2-like protein A (EC 2.3.2.-) (AIG2-like protein) (Avirulence-induced gene 2-like protein) (Avirulence-induced gene 2-like protein A) (Putative gamma-glutamylcyclotransferase),Avirulence induced protein 2 like protein FUNCTION: Putative gamma-glutamylcyclotransferase. {ECO:0000250|UniProtKB:O75223}. 2.3.2.- 20018,19103,14322 AIG2-like protein B (EC 2.3.2.-) (Avirulence-induced gene 2-like protein B) (Putative gamma-glutamylcyclotransferase),AIG2-like protein A (EC 2.3.2.-) (AIG2-like protein) (Avirulence-induced gene 2-like protein) (Avirulence-induced gene 2-like protein A) (Putative gamma-glutamylcyclotransferase),Avirulence induced protein 2 like protein cytosol [GO:0005829]; plasma membrane [GO:0005886]; transferase activity, transferring acyl groups [GO:0016746]; response to salt stress [GO:0009651],transferase activity, transferring acyl groups [GO:0016746] DEVELOPMENTAL STAGE: Constitutive expression with an increase during flowering. {ECO:0000305|PubMed:18214976}.,DEVELOPMENTAL STAGE: Expressed at the end of flowering and during seed maturation. {ECO:0000305|PubMed:18214976}. TISSUE SPECIFICITY: Expressed in flowerss, leaves, stems, seeds and roots. {ECO:0000305|PubMed:18214976}.,TISSUE SPECIFICITY: Expressed only in seeds. {ECO:0000305|PubMed:18214976}. locus:2167032;,locus:2164915; AT5G39730,AT5G39720 avirulence induced gene 2 like protein NA NA NA NA NA NA NA ENOG411E97I Q8W4B0,Q8S9K1,A0A1P8ARX0,F4I5D7 Q8W4B0_ARATH,Q8S9K1_ARATH,A0A1P8ARX0_ARATH,F4I5D7_ARATH NHL domain-containing protein (Uncharacterized protein At1g70280) (Uncharacterized protein At1g70280; F17O7.19),At1g23880/T23E23_8 (NHL domain-containing protein),NHL domain-containing protein 50302,61223,47340,56931 NHL domain-containing protein (Uncharacterized protein At1g70280) (Uncharacterized protein At1g70280; F17O7.19),At1g23880/T23E23_8 (NHL domain-containing protein),NHL domain-containing protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2199862;,locus:2016189; AT1G70280,AT1G23880 NHL repeat NA NA NA NA NA NA NA ENOG411DTJN LSG1-2,LSG1-1 Q9SJF1,Q9SHS8 LSG12_ARATH,LSG11_ARATH GTPase LSG1-2 (AtLSG1-2) (DAR GTPase 7) (Protein YEAST LSG1 ORTHOLOG 2),GTPase LSG1-1 (AtLSG1-1) (DAR GTPase 6) (Protein YEAST LSG1 ORTHOLOG 1) DISRUPTION PHENOTYPE: No effect on the association with 60S pre-ribosomes, but altered rRNA processing and accumulation of 18S rRNA precursors (PubMed:25319368). Embryo and leaf developmental defects (PubMed:25319368). Severe delay in development of the first true rosette leaves and frequent fused or triple cotyledons (PubMed:25319368). Lsg1-1 and lsg1-2 double mutants are lethal, when homozygous (PubMed:25319368). {ECO:0000269|PubMed:25319368}.,DISRUPTION PHENOTYPE: No effect on the rRNA processing (PubMed:25319368). Lsg1-1 and lsg1-2 double mutants are lethal, when homozygous (PubMed:25319368). {ECO:0000269|PubMed:25319368}. FUNCTION: GTPase involved in ribosome biogenesis (Probable). Binds to 23S rRNA and associates with 60S pre-ribosomes (PubMed:25319368). Involved in early cotyledon and leaf development (PubMed:25319368). {ECO:0000269|PubMed:25319368}.,FUNCTION: GTPase that might be redundant with LSG1-2 for ribosome biogenesis (Probable). Binds to 23S rRNA (PubMed:25319368). {ECO:0000269|PubMed:25319368}. MISCELLANEOUS: Although LSG1-1 does not show a nuclear localization, is not associated with ribosomes and the lsg1-1 mutant does not show any rRNA processing alterations, it might be redundant with LSG1-2 since it can partially complement a yeast lsg1 depletion strain, it binds to rRNA and a lsg1-1 and lsg1-2 double mutant is lethal. {ECO:0000305|PubMed:25319368}. 66743,60758 GTPase LSG1-2 (AtLSG1-2) (DAR GTPase 7) (Protein YEAST LSG1 ORTHOLOG 2),GTPase LSG1-1 (AtLSG1-1) (DAR GTPase 6) (Protein YEAST LSG1 ORTHOLOG 1) cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome binding [GO:0043022]; cotyledon development [GO:0048825]; leaf development [GO:0048366]; positive regulation of ribosome biogenesis [GO:0090070]; regulation of auxin polar transport [GO:2000012]; ribosome biogenesis [GO:0042254]; rRNA processing [GO:0006364],cytosol [GO:0005829]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome biogenesis [GO:0042254] TISSUE SPECIFICITY: Ubiquitous, with the highest expression in reproductive and strongly dividing tissues. {ECO:0000269|PubMed:25319368}.,TISSUE SPECIFICITY: Ubiquitous, with the highest expression in stem and hypsophyll on day 66. {ECO:0000269|PubMed:25319368}. locus:2201861;,locus:2059615; AT1G08410,AT2G27200 Large subunit GTPase 1 Os03g0647500 protein,Expressed protein (Os12g0618300 protein),Os03g0647500 protein (Fragment),Os12g0618300 protein (Fragment) Q0DQ01,Q2QM41,A0A0P0W1J0,A0A0P0YCL4,A0A0P0YCN3 Q0DQ01_ORYSJ,Q2QM41_ORYSJ,A0A0P0W1J0_ORYSJ,A0A0P0YCL4_ORYSJ,A0A0P0YCN3_ORYSJ Os03g0647500 OSNPB_030647500,Os12g0618300 LOC_Os12g42370 Os12g0618300 OsJ_36891 OSNPB_120618300,Os12g0618300 OSNPB_120618300 ENOG411DTJM ARP4,ARP4A Q84M92,Q9C9B2,A0A1P8AVW4 ARP4_ARATH,ARP4A_ARATH,A0A1P8AVW4_ARATH Actin-related protein 4,Actin-related protein 4A (Actin-related protein 5),Actin-related proteins 4A arp4-1 mutation causes partial sterility. Homozygous mutants had poorly developed siliques with a few or no seeds compared with heterozygous mutant or wild type siliques that were fully filled with seeds. Flowers on the homozygous sterile plants were often slightly smaller and open for considerably longer periods than wild type and a majority of them (80 to 90%) remained unfertilized. Otherwise mutant plants revealed only mild very morphological and developmental phenotypes. The anthers from the sterile plants were often smaller more heart shaped and contained fewer pollen grains compared with wild type anthers which were somewhat oblong and fully filled with pollen In addition the mutant pollen grains were slightly larger than wild type. Because the mutant stamens often had shorter filaments than the wild type self-pollination was seldom efficient. However upon manual pollination pollen from the homozygous mutant plants germinated on self or wild type stigmas and produced fertile seeds indicating that the mutant pollen grains although larger were viable. When homozygous mutant plant was pollinated with wild type pollen the cross-pollination resulted in near normal development of siliques and production of seeds suggesting that the female development was not affected by the arp4-1 mutation. Sterility in the homozygous mutant plants is the result of production of fewer pollen and inefficient self-pollination. Mutant plants had a 35 to 40% reduction in the amount of AtARP4 protein compared with wild type. Knockdown: Small seedlings; Dwarf; Completely sterile-R. Meagher-2005 FUNCTION: Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure. {ECO:0000269|PubMed:15743449}. 48937,15993,18904 Actin-related protein 4,Actin-related protein 4A (Actin-related protein 5),Actin-related proteins 4A cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; structural constituent of cytoskeleton [GO:0005200]; chromatin organization [GO:0006325]; covalent chromatin modification [GO:0016569]; long-day photoperiodism, flowering [GO:0048574]; pollen sperm cell differentiation [GO:0048235] TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in roots, seedlings, leaves and siliques (at protein level). {ECO:0000269|PubMed:11891255, ECO:0000269|PubMed:12609034}.,TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:11891255}. locus:2014104;,locus:2031536; AT1G18450,AT1G73910 Actin-related protein Actin-related protein 4 Q6ZJW9 ARP4_ORYSJ ARP4 Os08g0137200 LOC_Os08g04280 OJ1613_G04.21 OsJ_024932 FUNCTION: Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure. {ECO:0000250}. ENOG411DTJJ MOK9.1 Q93ZI7 Q93ZI7_ARATH AT5g35440/MOK9_2 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At5g35440) 86738 AT5g35440/MOK9_2 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At5g35440) locus:2169503; AT5G35430 CCR4-NOT transcription complex subunit Os09g0123100 protein (Putative Cnot10 protein) (cDNA clone:J033135J15, full insert sequence) Q6K272 Q6K272_ORYSJ Os09g0123100 Os09g0123100 OSNPB_090123100 P0415D04.44 ENOG411DTJK Q9LVA2 PP443_ARATH Pentatricopeptide repeat-containing protein At5g62370 110268 Pentatricopeptide repeat-containing protein At5g62370 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2167898; AT5G62370 Pentatricopeptide repeat-containing protein Os10g0116000 protein A0A0P0XR41 A0A0P0XR41_ORYSJ Os10g0116000 OSNPB_100116000 ENOG411DTJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myosin II heavy chain-like Microtubule-associated protein 70-4 (AtMAP70-4) (70 kDa microtubule-associated protein 4) Q10PZ6 MP704_ORYSJ MAP70.4 Os03g0215700 LOC_Os03g11650 OsJ_09915 FUNCTION: Plant-specific protein that interact with microtubules. {ECO:0000250}. ENOG411DTJC UROS,HEMD O48721,A0A1P8AZL4,A0A1P8AZK1 HEM4_ARATH,A0A1P8AZL4_ARATH,A0A1P8AZK1_ARATH Uroporphyrinogen-III synthase, chloroplastic (AtUROS) (EC 4.2.1.75) (Hydroxymethylbilane hydrolyase [cyclizing]) (Uroporphyrinogen-III cosynthase),Uroporphyrinogen-III synthase family protein FUNCTION: Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III, a precursor of tetrapyrroles such as chlorophyll, heme and phycobilins. {ECO:0000269|PubMed:18042043}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 3/4.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT2G26540-MONOMER;MetaCyc:AT2G26540-MONOMER; 4.2.1.75; 4.2.1.75 34225,26825,31884 Uroporphyrinogen-III synthase, chloroplastic (AtUROS) (EC 4.2.1.75) (Hydroxymethylbilane hydrolyase [cyclizing]) (Uroporphyrinogen-III cosynthase),Uroporphyrinogen-III synthase family protein chloroplast [GO:0009507]; uroporphyrinogen-III synthase activity [GO:0004852]; chlorophyll biosynthetic process [GO:0015995]; protoporphyrinogen IX biosynthetic process [GO:0006782]; uroporphyrinogen III biosynthetic process [GO:0006780],uroporphyrinogen-III synthase activity [GO:0004852]; tetrapyrrole biosynthetic process [GO:0033014] locus:2066256; AT2G26540 Uroporphyrinogen-III synthase Uroporphyrinogen-III synthase, chloroplastic (EC 4.2.1.75) (Hydroxymethylbilane hydrolyase [cyclizing]) (Uroporphyrinogen-III cosynthase) Q10QR9 HEM4_ORYSJ UROS HEMD Os03g0186100 LOC_Os03g08730 FUNCTION: Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III, a precursor of tetrapyrroles such as chlorophyll, heme and phycobilins. {ECO:0000250}. ENOG411DTJZ PEP Q9SZH4 PEP_ARATH RNA-binding KH domain-containing protein PEPPER DISRUPTION PHENOTYPE: Subtle morphological alterations in pep-2 and pep-4 such as leaf alterations, phyllotactic errors and sporadic presence of small fruits with multiple valves. Occasional asymmetry in valve growth and unfused carpels (PubMed:16356489). Rescues the flk mutant late-flowering phenotype with a concomitant decrease in FLC RNA levels (PubMed:19576878). {ECO:0000269|PubMed:16356489, ECO:0000269|PubMed:19576878}. FUNCTION: Regulates vegetative and gynoecium development (PubMed:16356489). In concert with HUA2, antagonizes FLK by positively regulating FLC probably at transcriptional and post-transcriptional levels, and thus acts as a negative regulator of flowering (PubMed:19576878). {ECO:0000269|PubMed:16356489, ECO:0000269|PubMed:19576878}. 54025 RNA-binding KH domain-containing protein PEPPER nucleus [GO:0005634]; RNA binding [GO:0003723]; gynoecium development [GO:0048467]; mRNA transcription [GO:0009299]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; negative regulation of short-day photoperiodism, flowering [GO:0048577]; regulation of transcription, DNA-templated [GO:0006355]; RNA processing [GO:0006396]; shoot system development [GO:0048367] DEVELOPMENTAL STAGE: In seedlings, expressed in leaf primordia and young developing leaves. Progressively circumscribed to the adaxial side of developing leaves to become restricted to the veins in fully expanded leaves. In roots, confined to the vasculature. Present in floral buds and young developing flower organs. Accumulates in perianth organs and stamens before being restricted to the vascular system in later postanthesis stages. Strong expression throughout the young pistil. Disapears from the apical stigma during postanthesis fruit maturation. Detected in the style until later stages in fruit development, mainly in style vasculature, but progressively fades away from most of the ovary region. {ECO:0000269|PubMed:16356489}. TISSUE SPECIFICITY: Detected in roots, shoots, leaves, flowers and fruits. {ECO:0000269|PubMed:16356489}. locus:2120755; AT4G26000 poly(rC)-binding protein KH domain-containing protein, putative, expressed (Os10g0564000 protein) (Putative nucleic acid binding protein) (cDNA, clone: J100061G17, full insert sequence) Q7XC34 Q7XC34_ORYSJ Os10g0564000 LOC_Os10g41440 OsJ_32483 OSJNBa0027P10.5 OSNPB_100564000 ENOG411DTJX CTF18 Q9C6I8,A0A1P8ASP2,F4I5S3 NOG1_ARATH,A0A1P8ASP2_ARATH,F4I5S3_ARATH Nucleolar GTP-binding protein 1,p-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Involved in the biogenesis of the 60S ribosomal subunit. {ECO:0000250}. 76849,81847,107020 Nucleolar GTP-binding protein 1,p-loop containing nucleoside triphosphate hydrolases superfamily protein membrane [GO:0016020]; nucleolus [GO:0005730]; GTP binding [GO:0005525]; ribosome biogenesis [GO:0042254],ATP binding [GO:0005524]; hydrolase activity [GO:0016787],replication fork [GO:0005657]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; sister chromatid cohesion [GO:0007062] locus:2036451;,locus:2197853; AT1G50920,AT1G04730 chromosome transmission fidelity protein 18 Os03g0264800 protein A0A0P0VVN7 A0A0P0VVN7_ORYSJ Os03g0264800 OSNPB_030264800 ENOG411E98V Q3E8W3 Q3E8W3_ARATH Uncharacterized protein 12981 Uncharacterized protein locus:2184216; AT5G28720 NA NA NA NA NA NA NA NA ENOG411DTJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0210400 protein A0A0P0WJ82 A0A0P0WJ82_ORYSJ Os05g0210400 OSNPB_050210400 ENOG411DTJP MDB19.14,HGL1 Q93Y12,A0A1I9LTS6 Q93Y12_ARATH,A0A1I9LTS6_ARATH Alpha glucosidase-like protein (At3g23640) (Heteroglycan glucosidase 1),Heteroglycan glucosidase 1 ARA:AT3G23640-MONOMER; 110879,118318 Alpha glucosidase-like protein (At3g23640) (Heteroglycan glucosidase 1),Heteroglycan glucosidase 1 chloroplast [GO:0009507]; carbohydrate binding [GO:0030246]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],carbohydrate binding [GO:0030246]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2088035; AT3G23640 Glycosyl hydrolases family 31 Os07g0421300 protein (cDNA clone:J023048A03, full insert sequence),Os07g0420700 protein (Fragment) Q0D6X6,A0A0P0X5N3 Q0D6X6_ORYSJ,A0A0P0X5N3_ORYSJ Os07g0421300 Os07g0421300 OSNPB_070421300,Os07g0420700 OSNPB_070420700 ENOG411DTJQ CIP7 O80386 CIP7_ARATH COP1-interacting protein 7 DISRUPTION PHENOTYPE: Defects in light-dependent anthocyanin and chlorophyll accumulation, as well as defects in the light control expression of light-inducible genes involved in anthocyanin biosynthesis and photosynthesis. {ECO:0000269|PubMed:9668129}. FUNCTION: Exhibits transcriptional activation activity. Positive regulator of light-regulated genes, probably being a direct downstream target of COP1 for mediating light control of gene expression. {ECO:0000269|PubMed:9668129}. 118425 COP1-interacting protein 7 nucleus [GO:0005634]; plasma membrane [GO:0005886]; anthocyanin-containing compound biosynthetic process [GO:0009718]; chlorophyll biosynthetic process [GO:0015995]; positive regulation of transcription, DNA-templated [GO:0045893]; response to light stimulus [GO:0009416]; transcription, DNA-templated [GO:0006351] locus:2124039; AT4G27430 NA NA NA NA NA NA NA NA ENOG411E98E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0512400 protein) (cDNA clone:J013038E14, full insert sequence),NB-ARC domain containing protein, expressed (Os12g0511900 protein),Os12g0511500 protein (Fragment) Q2QPZ2,Q2QQ00,A0A0P0YAJ7 Q2QPZ2_ORYSJ,Q2QQ00_ORYSJ,A0A0P0YAJ7_ORYSJ Os12g0512400 LOC_Os12g32790 OSNPB_120512400,Os12g0511900 LOC_Os12g32710 OSNPB_120511900,Os12g0511500 OSNPB_120511500 ENOG411DUKT ABC1K7,AtSIA1 B9DGY1,F4JFM1 AB1K7_ARATH,F4JFM1_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic (ABC1-LIKE KINASE 7) (EC 2.7.11.1) (Salt-induced ABC1 kinase 1, chloroplastic) (AtSIA1),Protein kinase superfamily protein DISRUPTION PHENOTYPE: Larger plastoglobules associated with thylakoids characterized by VTE1 accumulation and high tocopherol content. The pale green double mutant atsia1 atosa1 accumulates ferritin and superoxides, exhibits an increased nonphotochemical quenching (NPQ), and have a reduced tolerance to reactive oxygen species (ROS) (PubMed:24117441). Lower levels of the highly unsaturated lipid digalactosyldiacylglycerol (DGDG) and of different forms of monogalactosyldiacylglycerol (MGDG) and kaempferol. The abc1k7 abc1k8 double mutant accumulates strong levels of oxylipin-conjugated MGDG and DGDG (PubMed:25809944). {ECO:0000269|PubMed:24117441, ECO:0000269|PubMed:25809944}. FUNCTION: Involved in resistance to oxidative stress. Influences responses to reactive oxygen species (ROS) production. Regulates plastoglobules formation in thylakoids. Together with OSA1, regulates iron distribution within the chloroplast and mediates the oxidative stress response (PubMed:24117441). Together with ABC1K8, influences chloroplast lipid synthesis/accumulation and modulates chloroplast membrane composition in response to stress (PubMed:25809944). {ECO:0000269|PubMed:24117441, ECO:0000269|PubMed:25809944}. ARA:GQT-1939-MONOMER; 2.7.11.1 78279,81670 Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic (ABC1-LIKE KINASE 7) (EC 2.7.11.1) (Salt-induced ABC1 kinase 1, chloroplastic) (AtSIA1),Protein kinase superfamily protein chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastoglobule [GO:0010287]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; cellular response to oxidative stress [GO:0034599]; iron ion homeostasis [GO:0055072]; membrane lipid biosynthetic process [GO:0046467]; plastoglobule organization [GO:0080177]; regulation of response to reactive oxygen species [GO:1901031]; response to iron ion starvation [GO:1990641]; response to oxidative stress [GO:0006979],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; kinase activity [GO:0016301]; cellular response to oxidative stress [GO:0034599]; membrane lipid biosynthetic process [GO:0046467] TISSUE SPECIFICITY: Mostly expressed in leaves and flowers, and, to a lower extent, in roots. {ECO:0000269|PubMed:24117441}. locus:2077487; AT3G07700 ABC1 family ABC1 family protein-like (Os09g0250700 protein) Q6K2A4 Q6K2A4_ORYSJ Os09g0250700 Os09g0250700 B1080A02.8 OsJ_28532 OSNPB_090250700 ENOG411DUKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein BUD31 homolog NA NA NA NA NA NA NA ENOG411DUKV PCMP-H13 O23266,A0A1P8B7P3 PP308_ARATH,A0A1P8B7P3_ARATH Pentatricopeptide repeat-containing protein At4g14050, mitochondrial (Mitochondrial editing factor 35),Pentatricopeptide repeat (PPR) superfamily protein FUNCTION: Involved in C-to-U editing of mitochondrial RNA. Required specifically for editing the mitochondrial NAD4, MT-CYB/COB and RPL16 transcripts. {ECO:0000269|PubMed:26470017}. 68037,62281 Pentatricopeptide repeat-containing protein At4g14050, mitochondrial (Mitochondrial editing factor 35),Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mRNA processing [GO:0006397]; RNA modification [GO:0009451],zinc ion binding [GO:0008270] locus:2129361; AT4G14050 pentatricopeptide repeat-containing protein At4g14050 Os11g0661000 protein (Pentatricopeptide, putative, expressed),Os11g0661000 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J013049C10, full insert sequence) (cDNA clone:J023107P22, full insert sequence),Os05g0418500 protein H2KW94,Q0IR95,A0A0P0WMH1 H2KW94_ORYSJ,Q0IR95_ORYSJ,A0A0P0WMH1_ORYSJ Os11g0661000 LOC_Os11g43934 OSNPB_110661000,Os11g0661000 LOC_Os11g43934 Os11g0661000 OSNPB_110661000,Os05g0418500 OSNPB_050418500 ENOG411DUKW MHF15.13 F4K3T5,A0A1P8B3E5,F4K2T0,F4JGW1 F4K3T5_ARATH,A0A1P8B3E5_ARATH,F4K2T0_ARATH,F4JGW1_ARATH ARM repeat superfamily protein,Rix1 complex component R-ATH-6791226; 99991,24936,98207,29429 ARM repeat superfamily protein,Rix1 complex component MLL1 complex [GO:0071339]; plasmodesma [GO:0009506]; Rix1 complex [GO:0097344],MLL1 complex [GO:0071339]; Rix1 complex [GO:0097344] locus:2164230;,locus:2148553;,locus:2135074; AT5G06350,AT5G27010,AT4G04680 Rix1 complex component involved in 60S ribosome maturation Os04g0466700 protein Q0JCJ0 Q0JCJ0_ORYSJ Os04g0466700 Os04g0466700 OSNPB_040466700 ENOG411DUKP SAR1A,SAR1B,ATSAR1,AGAA.5 O04834,Q01474,O80489,O04712,Q8VYP7,Q3E6Q3 SAR1A_ARATH,SAR1B_ARATH,O80489_ARATH,O04712_ARATH,Q8VYP7_ARATH,Q3E6Q3_ARATH GTP-binding protein SAR1A,GTP-binding protein SAR1B,Putative GTP-binding protein, SAR1B (Secretion-associated RAS super family 1) (T12M4.12 protein),AGAA.5 (At4g02090) (Multidrug resistance protein ABC transporter family protein) (Uncharacterized protein AT4g02090) (Uncharacterized protein At4g02090/T10M13_10) (Uncharacterized protein T10M13.10),Putative Sar1 GTP binding protein (Ras-related small GTP-binding family protein) (Sar1-like GTP binding protein),Ras-related small GTP-binding family protein FUNCTION: Involved in transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000250}. R-ATH-204005;R-ATH-5694530;R-ATH-983170; 22030,21986,21966,22317,21939,13826 GTP-binding protein SAR1A,GTP-binding protein SAR1B,Putative GTP-binding protein, SAR1B (Secretion-associated RAS super family 1) (T12M4.12 protein),AGAA.5 (At4g02090) (Multidrug resistance protein ABC transporter family protein) (Uncharacterized protein AT4g02090) (Uncharacterized protein At4g02090/T10M13_10) (Uncharacterized protein T10M13.10),Putative Sar1 GTP binding protein (Ras-related small GTP-binding family protein) (Sar1-like GTP binding protein),Ras-related small GTP-binding family protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; extrinsic component of membrane [GO:0019898]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; GTP binding [GO:0005525]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; GTP binding [GO:0005525]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],intracellular [GO:0005622]; GTP binding [GO:0005525]; intracellular protein transport [GO:0006886] locus:2132148;,locus:2011796;,locus:2195306;,locus:2132173;,locus:2096104;,locus:2196080; AT4G02080,AT1G56330,AT1G09180,AT4G02090,AT3G62560,AT1G02620 gtp-binding protein Os01g0338000 protein (Putative small GTP-binding protein Bsar1a) (cDNA clone:006-210-H07, full insert sequence) (cDNA clone:J033126I16, full insert sequence),GTP-binding protein SAR1A, putative, expressed (Os12g0560300 protein) (cDNA clone:001-008-B07, full insert sequence) (cDNA clone:J023044P12, full insert sequence),GTP-binding protein (Os01g0254000 protein) (Putative small GTP-binding protein Bsar1a) (cDNA clone:001-008-G03, full insert sequence) (cDNA clone:001-207-C09, full insert sequence) (cDNA clone:J023112F13, full insert sequence) Q93W16,Q2QNM5,Q9SDK4 Q93W16_ORYSJ,Q2QNM5_ORYSJ,Q9SDK4_ORYSJ Os01g0338000 B1088D01.1 OsJ_01606 OSNPB_010338000 P0487E11.37,Os12g0560300 LOC_Os12g37360 Os12g0560300 OSNPB_120560300,GBP Os01g0254000 OsJ_01133 OSNPB_010254000 P0705D01.9 ENOG411DUKQ MFB13.10 Q9FLK0,A0A1P8BD18 Q9FLK0_ARATH,A0A1P8BD18_ARATH Similarity to apoptosis antagonizing transcription factor (Uncharacterized protein At5g61330) (rRNA processing protein-like protein),rRNA processing protein-like protein 49688,50928 Similarity to apoptosis antagonizing transcription factor (Uncharacterized protein At5g61330) (rRNA processing protein-like protein),rRNA processing protein-like protein nucleolus [GO:0005730],nucleus [GO:0005634] locus:2163248; AT5G61330 Apoptosis-antagonizing transcription factor C-terminal Os01g0526200 protein (Putative apoptosis antagonizing transcription factor) (cDNA clone:001-115-F02, full insert sequence) Q8L4B1 Q8L4B1_ORYSJ Os01g0526200 B1074C08.9 B1147B04.18 OsJ_02050 OSNPB_010526200 ENOG411DUKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein At1g22960 Os12g0152600 protein (Rf1 protein, mitochondrial, putative, expressed) Q2QXL4 Q2QXL4_ORYSJ Os12g0152600 LOC_Os12g05640 Os12g0152600 OsJ_35247 OSNPB_120152600 ENOG411DUKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os09g0572600 protein (Serine/threonine protein kinase) (cDNA clone:J023042D11, full insert sequence) Q650Z6 Q650Z6_ORYSJ Os09g0572600 B1130E07.8 B1331F11.28 OsJ_30440 OSNPB_090572600 ENOG411DUKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA eukaryotic translation initiation factor Eukaryotic translation initiation factor 4G (eIF-4G) (eIF4G) (Eukaryotic initiation factor 4F subunit p220) (eIF-4F p220 subunit),Os07g0555200 protein (Fragment) B9FXV5,A0A0P0X769,A0A0P0X756,A0A0P0X7K8,A0A0P0X7E2,A0A0P0X7M7 IF4G_ORYSJ,A0A0P0X769_ORYSJ,A0A0P0X756_ORYSJ,A0A0P0X7K8_ORYSJ,A0A0P0X7E2_ORYSJ,A0A0P0X7M7_ORYSJ Os07g0555200 LOC_Os07g36940 OsJ_24703 OSJNBa0058I18.6,Os07g0555200 OSNPB_070555200 FUNCTION: Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. ENOG411DUKY Q84M99 Q84M99_ARATH At2g03200 (Eukaryotic aspartyl protease family protein) (Putative chloroplast nucleoid DNA binding protein) 49588 At2g03200 (Eukaryotic aspartyl protease family protein) (Putative chloroplast nucleoid DNA binding protein) aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2056916; AT2G03200 aspartic proteinase Os04g0448300 protein (cDNA clone:001-206-A01, full insert sequence) (cDNA clone:J023010M08, full insert sequence),Os10g0539200 protein Q0JCV1,A0A0P0XX90 Q0JCV1_ORYSJ,A0A0P0XX90_ORYSJ Os04g0448300 Os04g0448300 OSNPB_040448300,Os10g0539200 OSNPB_100539200 ENOG411DUKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os06g0602800 protein (Fragment) A0A0P0WYG5 A0A0P0WYG5_ORYSJ Os06g0602800 OSNPB_060602800 ENOG411DUKD Q8L7E1,A8MQE3,F4JY80 Q8L7E1_ARATH,A8MQE3_ARATH,F4JY80_ARATH Alpha/beta-Hydrolases superfamily protein (At5g25770) (Uncharacterized protein At5g25770),Alpha/beta-Hydrolases superfamily protein 40806,47637,47238 Alpha/beta-Hydrolases superfamily protein (At5g25770) (Uncharacterized protein At5g25770),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2145274; AT5G25770 Prolyl oligopeptidase family Os06g0163200 protein (Fragment) Q0DEB5 Q0DEB5_ORYSJ Os06g0163200 Os06g0163200 OSNPB_060163200 ENOG411DUKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sulfotransferase NA NA NA NA NA NA NA ENOG411DUKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0545100 protein (Fragment) A0A0P0V3T2 A0A0P0V3T2_ORYSJ Os01g0545100 OSNPB_010545100 ENOG411DUKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DUKA DTX16 Q9FHB6 DTX16_ARATH Protein DETOXIFICATION 16 (AtDTX16) (Multidrug and toxic compound extrusion protein 16) (MATE protein 16) R-ATH-425366; 52473 Protein DETOXIFICATION 16 (AtDTX16) (Multidrug and toxic compound extrusion protein 16) (MATE protein 16) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855]; response to nematode [GO:0009624] locus:2156737; AT5G52450 Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),Os06g0495100 protein Q651I6,Q651L0,B7FAP5,A0A0P0WWU5 Q651I6_ORYSJ,Q651L0_ORYSJ,B7FAP5_ORYSJ,A0A0P0WWU5_ORYSJ Os06g0494400 Os06g0494400 B1423D04.35 OSNPB_060494400,Os06g0495500 B1089G05.12 OSNPB_060495500,Os04g0373400 OSNPB_040373400,Os06g0495100 OSNPB_060495100 ENOG411DUKB FBX5 Q9M224,O22161 ADLO2_ARATH,ADLO1_ARATH Protein ARABIDILLO 2,Protein ARABIDILLO 1 (F-box only protein 5) No visible phenotype.,Mutant plants grown on vertical plates had fewer lateral roots were developed than wild type or either single mutant despite having similar primary root lengths to wild type. Significant decrease in number of lateral root primordia was found in double mutant roots with no differences in later stages of lateral root development. FUNCTION: Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA). {ECO:0000269|PubMed:16434475}. 100745,100642 Protein ARABIDILLO 2,Protein ARABIDILLO 1 (F-box only protein 5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; lateral root development [GO:0048527],cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor binding [GO:0008134]; lateral root development [GO:0048527] DEVELOPMENTAL STAGE: Present in lateral root primordia. {ECO:0000269|PubMed:16434475}. TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:16434475}.,TISSUE SPECIFICITY: Expressed ubiquitously, with higher levels in root tip, pericycle and vasculature. {ECO:0000269|PubMed:16434475}. locus:2103351;,locus:2055033; AT3G60350,AT2G44900 armadillo beta-catenin repeat family protein Os10g0563200 protein (Fragment),Os07g0434241 protein Q0IVM9,A0A0P0X5A6 Q0IVM9_ORYSJ,A0A0P0X5A6_ORYSJ Os10g0563200 Os10g0563200 OSNPB_100563200,Os07g0434241 OSNPB_070434241 ENOG411DUKC AMT1-1,AMT1-3,AMT1-4,AMT1-5,AMT1-2 P54144,Q9SQH9,Q9SVT8,Q9LK16,Q9ZPJ8 AMT11_ARATH,AMT13_ARATH,AMT14_ARATH,AMT15_ARATH,AMT12_ARATH Ammonium transporter 1 member 1 (AtAMT1;1),Ammonium transporter 1 member 3 (AtAMT1;3),Ammonium transporter 1 member 4 (AtAMT1;4),Putative ammonium transporter 1 member 5 (AtAMT1;5),Ammonium transporter 1 member 2 (AtAMT1;2) DISRUPTION PHENOTYPE: No effect on ammonium uptake. Higher expression of AMT1-2; AMT1-3 and AMT2-1. {ECO:0000269|PubMed:12427993}. Decreased ammonium influx.,The amt1;2-1 mutant appears to grow normally on media with different levels of ammonium or ammonium nitrate but seems slightly more resistant to methylammonium that wild type seedlings. High affinity ammonium uptake is reduced in the roots of amt1;2-2 mutants. There is no change in the level of AMT1;1 AMT1;3 or AMT2;1 transcripts for these mutants relative to wild type in low or high nitrogen conditions.,The amt1;2-2 mutant appears to grow normally on media with different levels of ammonium or ammonium nitrate but seems slightly more resistant to methylammonium that wild type seedlings. High affinity ammonium uptake is reduced in the roots of amt1;2-2 mutants. There is no change in the level of AMT1;1 AMT1;3 or AMT2;1 transcripts for these mutants relative to wild type in low or high nitrogen conditions. Seedling lethal when grown on both sucrose and ammonium; Slightly thicker leaves-A. Glass-2002 FUNCTION: High affinity ammonium transporter probably involved in ammonium uptake from the soil, long-distance transport to the shoots and re-uptake of apoplastic ammonium that derives from photorespiration in shoots. Contributes with AMT1-3 to the overall ammonium uptake capacity in roots under nitrogen-deficiency conditions. {ECO:0000269|PubMed:12481062, ECO:0000269|PubMed:16806203, ECO:0000269|PubMed:16917981, ECO:0000269|PubMed:17026539}.,FUNCTION: Ammonium transporter probably involved in ammonium uptake from the soil. Contributes with AMT1-1 to the overall ammonium uptake capacity in roots under nitrogen-deficiency conditions. {ECO:0000269|PubMed:17026539}.,FUNCTION: High affinity ammonium transporter in the plasma membrane. {ECO:0000269|PubMed:19073648}.,FUNCTION: Involved in ammonium transport. {ECO:0000250}.,FUNCTION: Ammonium transporter probably involved in ammonium uptake from the soil. {ECO:0000269|PubMed:10330477}. ARA:AT4G13510-MONOMER;MetaCyc:AT4G13510-MONOMER;,ARA:AT3G24300-MONOMER;MetaCyc:AT3G24300-MONOMER;,ARA:GQT-2784-MONOMER; 53577,53298,53658,52638,55014 Ammonium transporter 1 member 1 (AtAMT1;1),Ammonium transporter 1 member 3 (AtAMT1;3),Ammonium transporter 1 member 4 (AtAMT1;4),Putative ammonium transporter 1 member 5 (AtAMT1;5),Ammonium transporter 1 member 2 (AtAMT1;2) integral component of plasma membrane [GO:0005887]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ammonium transmembrane transporter activity [GO:0008519]; protein self-association [GO:0043621]; ammonium transport [GO:0015696]; lateral root branching [GO:0080181]; lateral root formation [GO:0010311]; organic cation transport [GO:0015695]; protein polymerization [GO:0051258]; response to abscisic acid [GO:0009737]; response to karrikin [GO:0080167],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; ammonium transmembrane transporter activity [GO:0008519]; ammonium transport [GO:0015696]; lateral root branching [GO:0080181]; lateral root formation [GO:0010311]; organic cation transport [GO:0015695],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ammonium transmembrane transporter activity [GO:0008519]; high-affinity secondary active ammonium transmembrane transporter activity [GO:0015398]; ammonium transmembrane transport [GO:0072488]; organic cation transport [GO:0015695],integral component of plasma membrane [GO:0005887]; ammonium transmembrane transporter activity [GO:0008519]; ammonium transport [GO:0015696]; organic cation transport [GO:0015695],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; ammonium transmembrane transporter activity [GO:0008519]; ammonium transmembrane transport [GO:0072488]; ammonium transport [GO:0015696]; methylammonium transport [GO:0015843]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Highly expressed in roots. Expressed in root tips, root hairs, root epidermis, rhizodermis, cortex and pericycle. Expressed in leaves epidermal and mesophyll cells. {ECO:0000269|PubMed:10330477, ECO:0000269|PubMed:16917981, ECO:0000269|PubMed:17026539, ECO:0000269|PubMed:17085512}.,TISSUE SPECIFICITY: Highly expressed in roots. Expressed in root tips, root hairs, root epidermis, rhizodermis and cortex. {ECO:0000269|PubMed:10330477, ECO:0000269|PubMed:17026539}.,TISSUE SPECIFICITY: Specifically expressed in pollen grains and tubes. {ECO:0000269|PubMed:19073648}.,TISSUE SPECIFICITY: High expression in root. {ECO:0000269|PubMed:10330477}. locus:2140877;,locus:2087173;,locus:2117758;,locus:2087168;,locus:2010791; AT4G13510,AT3G24300,AT4G28700,AT3G24290,AT1G64780 Ammonium transporter Ammonium transporter 1 member 3 (OsAMT1;3) Q6K9G3 AMT13_ORYSJ AMT1-3 AMT1-2 Os02g0620500 LOC_Os02g40710 OJ1234_B11.1 OJ1372_D06.26 OsJ_07561 FUNCTION: Ammonium transporter probably involved in ammonium uptake from the soil. {ECO:0000269|PubMed:12610225, ECO:0000269|PubMed:12881500}. ENOG411DUKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copine Os06g0608800 protein (Putative copine I) (cDNA clone:J013115P09, full insert sequence) (cDNA clone:J023106M02, full insert sequence),Os06g0608800 protein Q69V56,Q69V55 Q69V56_ORYSJ,Q69V55_ORYSJ P0556B08.19-1 Os06g0608800 OSNPB_060608800,P0556B08.19-2 Os06g0608800 OSNPB_060608800 ENOG411DUKN Q9LEU8 ARLY_ARATH Argininosuccinate lyase, chloroplastic (EC 4.3.2.1) (Arginosuccinase) PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3. ARA:AT5G10920-MONOMER; R-ATH-70635; 4.3.2.1 57512 Argininosuccinate lyase, chloroplastic (EC 4.3.2.1) (Arginosuccinase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; argininosuccinate lyase activity [GO:0004056]; arginine biosynthetic process via ornithine [GO:0042450] locus:2183825; AT5G10920 argininosuccinate lyase Os03g0824700 protein (Putative lyase),Argininosuccinate lyase (Argininosuccinate lyase, putative, expressed) (Os03g0305500 protein) (cDNA clone:J023056K03, full insert sequence),Argininosuccinate lyase (Os03g0305500 protein),Os03g0824900 protein (Putative lyase) Q94GD6,Q10MK5,A0A024FLK4,Q94GD8 Q94GD6_ORYSJ,Q10MK5_ORYSJ,A0A024FLK4_ORYSJ,Q94GD8_ORYSJ OJ1111_B11.24 Os03g0824700 OsJ_13181 OSNPB_030824700,OsASL1 LOC_Os03g19280 Os03g0305500 OsJ_10552 OSNPB_030305500,OsASL1 Os03g0305500 OSNPB_030305500,OJ1111_B11.22 Os03g0824900 OSNPB_030824900 ENOG411DUKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: hydrolase alpha beta fold family protein Hydrolase-like protein (Os01g0168800 protein) (p0028E10.22 protein) Q9AS70 Q9AS70_ORYSJ P0028E10.22 Os01g0168800 OJ1276_B06.21 OSNPB_010168800 ENOG411DUKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC NA NA NA NA NA NA NA ENOG411DUKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin transport protein Auxin transport protein BIG,Os09g0247700 protein (Fragment) B9G2A8,A0A0P0XJE2 BIG_ORYSJ,A0A0P0XJE2_ORYSJ Os09g0247700 LOC_Os09g07294 OJ1451_A02.25 OsJ_28507 P0499G10.6,Os09g0247700 OSNPB_090247700 FUNCTION: Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development) (By similarity). {ECO:0000250}. ENOG411DUKK T16L24.60 Q9M1B6 Q9M1B6_ARATH Leucine-rich repeat (LRR) family protein (Uncharacterized protein T16L24.60) 46467 Leucine-rich repeat (LRR) family protein (Uncharacterized protein T16L24.60) locus:2097458; AT3G59510 Leucine-rich repeat family protein NA NA NA NA NA NA NA ENOG411DUK4 Q93XZ7 Q93XZ7_ARATH At5g42570 (B-cell receptor-associated 31-like protein) (Uncharacterized protein At5g42570; K16E1.4) 24565 At5g42570 (B-cell receptor-associated 31-like protein) (Uncharacterized protein At5g42570; K16E1.4) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; protein localization to endoplasmic reticulum exit site [GO:0070973] locus:2152691; AT5G42570 B-cell receptor-associated protein 31-like Os05g0272900 protein (cDNA clone:002-121-H04, full insert sequence),Os02g0321800 protein (cDNA clone:J023065A17, full insert sequence),Os02g0321800 protein Q6ATF8,Q6ER68,A0A0P0VIE0 Q6ATF8_ORYSJ,Q6ER68_ORYSJ,A0A0P0VIE0_ORYSJ Os05g0272900 OsJ_17869 OSJNBb0061M13.14 OSNPB_050272900,Os02g0321800 OsJ_06479 OSJNBa0073A18.26-1 OSNPB_020321800,Os02g0321800 OSNPB_020321800 ENOG411DUK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LisH NA NA NA NA NA NA NA ENOG411DUK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Expressed protein (Os11g0595100 protein) (cDNA clone:002-122-A06, full insert sequence) (cDNA clone:J033031B16, full insert sequence),Os11g0594600 protein (Fragment),Os08g0293200 protein (Fragment) Q2R1S2,A0A0N7KT59,A0A0P0XE77 Q2R1S2_ORYSJ,A0A0N7KT59_ORYSJ,A0A0P0XE77_ORYSJ LOC_Os11g38250 Os11g0595100 OsJ_34459 OSNPB_110595100,Os11g0594600 OSNPB_110594600,Os08g0293200 OSNPB_080293200 ENOG411DUK7 LRX2,LRX1 O48809,O65375 LRX2_ARATH,LRX1_ARATH Leucine-rich repeat extensin-like protein 2 (AtLRX2) (LRR/EXTENSIN2) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat extensin-like protein 1 (AtLRX1) (LRR/EXTENSIN1) (Cell wall hydroxyproline-rich glycoprotein) DISRUPTION PHENOTYPE: No visible effect. Enhances LRX1 disruption phenotype when associated with LRX1 disruption; frequent rupture of root hairs soon after their initiation. {ECO:0000269|PubMed:12834403}.,DISRUPTION PHENOTYPE: Irregular root hair development that frequently abort, swell, or branch. Stronger phenotype when associated with LRX2 disruption; frequent rupture of root hairs soon after their initiation. {ECO:0000269|PubMed:11331608, ECO:0000269|PubMed:12834403}. Root hair defective -B. Keller-2001 FUNCTION: Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation. {ECO:0000269|PubMed:12834403}.,FUNCTION: Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation. {ECO:0000269|PubMed:11331608, ECO:0000269|PubMed:12834403}. 85485,80994 Leucine-rich repeat extensin-like protein 2 (AtLRX2) (LRR/EXTENSIN2) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat extensin-like protein 1 (AtLRX1) (LRR/EXTENSIN1) (Cell wall hydroxyproline-rich glycoprotein) cell wall [GO:0005618]; extracellular region [GO:0005576]; cell wall organization [GO:0071555]; multicellular organism development [GO:0007275],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; structural constituent of cell wall [GO:0005199]; cell morphogenesis involved in differentiation [GO:0000904]; cell wall organization [GO:0071555]; trichoblast differentiation [GO:0010054]; unidimensional cell growth [GO:0009826] DEVELOPMENTAL STAGE: First observed in differentiating trichoblast and later confined to root hair proper. Soluble in the early stages of root hair development and becomes insolubilized in later stages. {ECO:0000269|PubMed:11331608}. TISSUE SPECIFICITY: Mostly expressed in roots, also present in stems at low levels. In roots, confined to differentiation zones, the collet, and meristematic cells of tips. {ECO:0000269|PubMed:12834403}.,TISSUE SPECIFICITY: Expressed in root hair cells (at protein level). {ECO:0000269|PubMed:11331608}. locus:2008895; AT1G62440,AT1G12040 Leucine-rich repeat Os02g0138000 protein (Putative extensin) Q6YXX5 Q6YXX5_ORYSJ Os02g0138000 Os02g0138000 OsJ_05308 OSJNBa0026E05.15 OSNPB_020138000 ENOG411DUK0 TS1,TS2 Q9S7B5,Q9SSP5 THRC1_ARATH,THRC2_ARATH Threonine synthase 1, chloroplastic (EC 4.2.3.1) (Protein METHIONINE OVER-ACCUMULATOR 2),Threonine synthase 2, chloroplastic (EC 4.2.3.1) Short roots; Slow growth; Low threonine levels; Severely elevated methionine levels in rosettes-S. Naito-2000 FUNCTION: Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.,FUNCTION: Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine. {ECO:0000269|PubMed:19455135}. MISCELLANEOUS: Binds 4 S-adenosyl-L-methionine (SAM) molecules per dimer. Although SAM3 and SAM4 have equivalent positions, their interactions with the protein are not identical. SAM3 interacts with Lys-181 and Asn-187 of monomer B, whereas SAM4 interacts only with Lys-181 of monomer A.; MISCELLANEOUS: Much more active than TS2 at physiological concentrations of S-adenosyl-L-methionine (20 uM).,MISCELLANEOUS: Binds 4 S-adenosyl-L-methionine (SAM) molecules per dimer. Although SAM3 and SAM4 have equivalent positions, their interactions with the protein are not identical. SAM3 interacts with Lys-172 and Asn-178 of monomer B, whereas SAM4 interacts only with Lys-172 of monomer A (By similarity). {ECO:0000250}.; MISCELLANEOUS: Much less active than TS1 at physiological concentrations of S-adenosyl-methionine (20 uM). PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 5/5. ARA:AT1G72810-MONOMER; 4.2.3.1; 4.2.3.1 57777,56925 Threonine synthase 1, chloroplastic (EC 4.2.3.1) (Protein METHIONINE OVER-ACCUMULATOR 2),Threonine synthase 2, chloroplastic (EC 4.2.3.1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; pyridoxal phosphate binding [GO:0030170]; threonine synthase activity [GO:0004795]; threonine biosynthetic process [GO:0009088],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; pyridoxal phosphate binding [GO:0030170]; threonine synthase activity [GO:0004795]; threonine biosynthetic process [GO:0009088] locus:2123939;,locus:2032632; AT4G29840,AT1G72810 threonine synthase Os05g0549700 protein (Putative threonine synthase),Os01g0693800 protein (Threonine synthase-like) (cDNA clone:006-202-C12, full insert sequence) (cDNA clone:J033024E01, full insert sequence) Q6L4H5,Q8LJJ2 Q6L4H5_ORYSJ,Q8LJJ2_ORYSJ P0560C03.1 Os05g0549700 OsJ_19448 OSNPB_050549700,Os01g0693800 OSNPB_010693800 P0431H09.7 ENOG411DUK1 PXC2 Q9LZV7 PXC2_ARATH Leucine-rich repeat receptor-like protein kinase PXC2 (Protein PXY/TDR-CORRELATED 2) FUNCTION: Leucine-rich repeat receptor-like protein kinase that may play a role in vascular tissues development. {ECO:0000250|UniProtKB:Q9SJQ1}. 104179 Leucine-rich repeat receptor-like protein kinase PXC2 (Protein PXY/TDR-CORRELATED 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in the vascular strands of cotyledons, the shoot apex, hypocotyls, roots, leaves, stems and flowers. {ECO:0000269|PubMed:23815750}. locus:2181042; AT5G01890 probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like NA NA NA NA NA NA NA ENOG411DUK2 CHR25,RAD54 Q0PCS3,A0A1I9LM75 CHR25_ARATH,A0A1I9LM75_ARATH Protein CHROMATIN REMODELING 25 (AtCHR25) (EC 3.6.4.-) (DNA repair and recombination protein RAD54) (AtRAD54),DNA repair/recombination protein DISRUPTION PHENOTYPE: Increased sensitivity to gamma-irradiation and to the cross-linking reagent cisplatin (PubMed:17227544). Reduced efficiency of somatic homologous recombination (HR) (PubMed:17227544, PubMed:16547115). Reduced synthesis-dependent strand annealing (SDSA) frequency (PubMed:22860689). Impaired geminiviral replication (e.g. tomato leaf curl virus (ToLCV)) (PubMed:22171001). {ECO:0000269|PubMed:16547115, ECO:0000269|PubMed:17227544, ECO:0000269|PubMed:22171001, ECO:0000269|PubMed:22860689}. Increased sensitivity to gamma radiation and the cross-linking reagent cisplatin. Reduced efficiency of somatic homologous recombination. Sensitive to gamma radiation and cisplatin-S. Toki-2006 FUNCTION: Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments. Addition of RAD54 overcomes inhibition of DNA strand exchange by RAD51 bound to substrate dsDNA. Species preference in the RAD51 dissociation and DNA strand exchange assays underlines the importance of specific RAD54-RAD51 interactions. RAD51 is unable to release dsDNA upon ATP hydrolysis, leaving it stuck on the heteroduplex DNA product after DNA strand exchange (By similarity). Involved in DNA repair and mitotic recombination (PubMed:17227544, PubMed:16547115, PubMed:18430956). Functions in the homologous recombinational DNA repair (RAD52) pathway (PubMed:17227544, PubMed:16547115, PubMed:18430956). Required for synthesis-dependent strand annealing (SDSA) during double-strand break repair (PubMed:22860689). {ECO:0000250|UniProtKB:P32863, ECO:0000269|PubMed:16547115, ECO:0000269|PubMed:17227544, ECO:0000269|PubMed:18430956, ECO:0000269|PubMed:22860689}.; FUNCTION: Facilitates geminiviral replication (e.g. geminivirus mungbean yellow mosaic virus (MYMV) and tomato leaf curl virus (ToLCV)). {ECO:0000269|PubMed:22171001}. 3.6.4.- 101858,87446 Protein CHROMATIN REMODELING 25 (AtCHR25) (EC 3.6.4.-) (DNA repair and recombination protein RAD54) (AtRAD54),DNA repair/recombination protein nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; cell cycle [GO:0007049]; cell division [GO:0051301]; cellular response to gamma radiation [GO:0071480]; cellular response to metal ion [GO:0071248]; double-strand break repair via homologous recombination [GO:0000724]; double-strand break repair via synthesis-dependent strand annealing [GO:0045003]; interaction with host [GO:0051701]; response to gamma radiation [GO:0010332]; viral process [GO:0016032],ATP binding [GO:0005524] TISSUE SPECIFICITY: Expressed ubiquitously, with the highest levels of expression in flower buds. Present in flower buds (at protein level). {ECO:0000269|PubMed:17227544}. locus:2094083; AT3G19210 DNA repair and recombination protein DNA repair and recombination protein RAD54 (OsRad54) (EC 3.6.4.-) A4PBL4 RAD54_ORYSJ RAD54 Os02g0762800 LOC_Os02g52510 OsJ_08484 P0486G03.23 FUNCTION: Involved in DNA repair and mitotic recombination. {ECO:0000250}. ENOG411DUK3 SDC Q9MA74 SDC1_ARATH Serine decarboxylase (AtSDC) (EC 4.1.1.-) (Protein EMBRYO DEFECTIVE 1075) (Serine decarboxylase 1) (AtSDC1) DISRUPTION PHENOTYPE: Dwarf plants with necrosis along the edges of the leaves, multiple inflorescences and sterile flowers. {ECO:0000269|PubMed:22489147}. Under long day conditions the size of atsdc-1 seedlings was much smaller than that of the wild type and the mutant never reached the height of the mature wild type. Mutant was sterile and had multiple inflorescences. Under short day conditions atsdc-1 flowered earlier than the wild type and smaller size and multiple inflorescence defects in the mutant could be rescued. Embryo defective; Gametophyte defective (inferred)-D. Meinke-2002 FUNCTION: Catalyzes the biosynthesis of ethanolamine from serine. Highly specific for L-serine and does not attack D-serine, L-phosphoserine, phosphatidylserine, L-histidine L-glutamate L-tyrosine or L-tryptophan. Decarboxylation of free serine is the major source of ethanolamine production in plants and ethanolamine metabolism is crucial for the synthesis of choline, phosphatidylethanolamine (PE) and phosphatidylcholine (PC), and thus for plant growth. {ECO:0000269|PubMed:11461929, ECO:0000269|PubMed:14634155, ECO:0000269|PubMed:22489147}. MISCELLANEOUS: The mutant phenotype can be rescue by exogenous application of ethanolamine. {ECO:0000305|PubMed:22489147}. ARA:AT1G43710-MONOMER; 4.1.1.- 54077 Serine decarboxylase (AtSDC) (EC 4.1.1.-) (Protein EMBRYO DEFECTIVE 1075) (Serine decarboxylase 1) (AtSDC1) cytosol [GO:0005829]; plasma membrane [GO:0005886]; carboxy-lyase activity [GO:0016831]; pyridoxal phosphate binding [GO:0030170]; carboxylic acid metabolic process [GO:0019752]; ethanolamine metabolic process [GO:0006580] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:22489147}. locus:2031133; AT1G43710 histidine Serine decarboxylase 1 (EC 4.1.1.-),Os02g0541325 protein,Os02g0541300 protein (Fragment) Q6ESZ9,A0A0P0VK43,A0A0P0VK09 SDC1_ORYSJ,A0A0P0VK43_ORYSJ,A0A0P0VK09_ORYSJ SDC1 Os02g0541325 LOC_Os02g33710 OJ1298_H07.24 OsJ_07054 P0472F10.2,Os02g0541325 OSNPB_020541325,Os02g0541300 OSNPB_020541300 FUNCTION: Catalyzes the biosynthesis of ethanolamine from serine. Decarboxylation of free serine is the major source of ethanolamine production in plants and ethanolamine metabolism is crucial for the synthesis of choline, phosphatidylethanolamine (PE) and phosphatidylcholine (PC), and thus for plant growth (By similarity). {ECO:0000250}. ENOG411DUK8 T22E16.240 Q9M2S1,A0A1I9LSN7,F4JBN0,A0A1I9LSN5,A0A1I9LSN6 Q9M2S1_ARATH,A0A1I9LSN7_ARATH,F4JBN0_ARATH,A0A1I9LSN5_ARATH,A0A1I9LSN6_ARATH Regulator of chromosome condensation (RCC1) family protein (Regulator of chromosome condensation-like protein),Regulator of chromosome condensation (RCC1) family protein 51407,52436,44006,49349,47093 Regulator of chromosome condensation (RCC1) family protein (Regulator of chromosome condensation-like protein),Regulator of chromosome condensation (RCC1) family protein nucleus [GO:0005634]; histone binding [GO:0042393]; cellular response to freezing [GO:0071497]; cold acclimation [GO:0009631]; regulation of lignin biosynthetic process [GO:1901141] locus:2099986;,locus:2084405; AT3G55580,AT3G53830 Regulator of chromosome condensation Os01g0846800 protein (Fragment),Os05g0456925 protein A0A0P0VA80,A0A0P0WN65 A0A0P0VA80_ORYSJ,A0A0P0WN65_ORYSJ Os01g0846800 OSNPB_010846800,Os05g0456925 OSNPB_050456925 ENOG411DUK9 SULTR1;2,SULTR1;3,SULTR1;1 Q9MAX3,Q9FEP7,Q9SAY1,A0A1P8AQP6,A0A1P8APQ2,A0A1P8AQM4,A0A1P8AQN0,A0A1P8AQR2 SUT12_ARATH,SUT13_ARATH,SUT11_ARATH,A0A1P8AQP6_ARATH,A0A1P8APQ2_ARATH,A0A1P8AQM4_ARATH,A0A1P8AQN0_ARATH,A0A1P8AQR2_ARATH Sulfate transporter 1.2,Sulfate transporter 1.3,Sulfate transporter 1.1 (AST101) (High-affinity sulfate transporter 1) (Hst1At),Sulfate transporter 12,Sulfate transporter 13 Reduced sulfate transport in roots; Resistant to selenate-J. Davies-2002 FUNCTION: High-affinity H(+)/sulfate cotransporter that mediates the uptake of the environmental sulfate by plant roots. Plays a central role in the regulation of sulfate assimilation. Unable to transport molybdate. {ECO:0000269|PubMed:11846879, ECO:0000269|PubMed:11846880, ECO:0000269|PubMed:18003916}.,FUNCTION: High-affinity H(+)/sulfate cotransporter that mediates the loading of sulfate into the sieve tube. Plays a central role in the regulation of sulfate assimilation. {ECO:0000269|PubMed:12692311}.,FUNCTION: High-affinity H(+)/sulfate cotransporter that mediates the uptake of the environmental sulfate by plant roots under low-sulfur conditions. Plays a central role in the regulation of sulfate assimilation. {ECO:0000269|PubMed:10854860, ECO:0000269|PubMed:10929111, ECO:0000269|PubMed:11846879}. MISCELLANEOUS: Sel1 mutations in the gene lead to the resistance of the plant to selenate, a toxic analog of sulfate.,MISCELLANEOUS: Loss-of-function mutation of the gene result in an attenuation of the source-to-sink transport of sulfate. R-ATH-174362;R-ATH-427601; 71707,72227,70657,67736,65599,65637,50373,56017 Sulfate transporter 1.2,Sulfate transporter 1.3,Sulfate transporter 1.1 (AST101) (High-affinity sulfate transporter 1) (Hst1At),Sulfate transporter 12,Sulfate transporter 13 integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; secondary active sulfate transmembrane transporter activity [GO:0008271]; symporter activity [GO:0015293]; cellular response to sulfate starvation [GO:0009970],integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293],integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293]; sulfate transmembrane transport [GO:1902358]; sulfate transport [GO:0008272],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; secondary active sulfate transmembrane transporter activity [GO:0008271] TISSUE SPECIFICITY: Expressed in lateral root cap, root hairs, epidermal and cortical cells of roots. {ECO:0000269|PubMed:11846879}.,TISSUE SPECIFICITY: Expressed in the phloem of cotyledons, hypocotyls and roots. {ECO:0000269|PubMed:12692311}.,TISSUE SPECIFICITY: Expressed in lateral root cap, root hairs, epidermal and cortical cells of roots. {ECO:0000269|PubMed:10854860, ECO:0000269|PubMed:10929111, ECO:0000269|PubMed:11846879}. locus:2029396;,locus:2030606;,locus:2138561; AT1G78000,AT1G22150,AT4G08620 sulfate transporter Os03g0195800 protein (Putative sulfate transporter) (Sulfate transporter 1.2, putative, expressed) (cDNA clone:J033116I10, full insert sequence),Os08g0406400 protein (Fragment) Q8H7X3,Q0J5T2 Q8H7X3_ORYSJ,Q0J5T2_ORYSJ LOC_Os03g09970 Os03g0195800 OsJ_09765 OSJNBa0064E16.4 OSNPB_030195800,Os08g0406400 Os08g0406400 OSNPB_080406400 ENOG411EJPX PCMP-H28 A8MQA3 PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 67101 Pentatricopeptide repeat-containing protein At4g21065 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:4010713895; AT4G21065 Pentatricopeptide repeat-containing protein Os12g0130900 protein (Fragment) Q0IQC4 Q0IQC4_ORYSJ Os12g0130900 Os12g0130900 OSNPB_120130900 ENOG411EMD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EMD6 F18B3.130 Q9SVL4 Q9SVL4_ARATH At3g50850 (Putative methyltransferase family protein) (Uncharacterized protein F18B3.130) 27911 At3g50850 (Putative methyltransferase family protein) (Uncharacterized protein F18B3.130) methyltransferase activity [GO:0008168] locus:2078002; AT3G50850 Putative methyltransferase NA NA NA NA NA NA NA ENOG411EMD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pfkB family carbohydrate kinase NA NA NA NA NA NA NA ENOG411EMDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box LRR-repeat protein F-box domain containing protein, expressed (Os10g0502900 protein) (cDNA clone:J023083I09, full insert sequence) Q337F4 Q337F4_ORYSJ LOC_Os10g35920 Os10g0502900 OsJ_32075 OSNPB_100502900 ENOG411EMDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein NA NA NA NA NA NA NA ENOG411EMDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EMDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EMDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEK C terminal domain NA NA NA NA NA NA NA ENOG411EMDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEK C terminal domain NA NA NA NA NA NA NA ENOG411EMDN Q8LAA8,F4JTL2,F4JTL0 Q8LAA8_ARATH,F4JTL2_ARATH,F4JTL0_ARATH Glycerol kinase (Uncharacterized protein At4g38225),Glycerol kinase 39896,33908,40100 Glycerol kinase (Uncharacterized protein At4g38225),Glycerol kinase kinase activity [GO:0016301],chloroplast [GO:0009507]; kinase activity [GO:0016301] locus:505006568; AT4G38225 NA NA NA NA NA NA NA NA ENOG411EMDM CID7 O64843,A0A1P8B1H7,A0A1P8B1N0,A0A1P8B1J3 CID7_ARATH,A0A1P8B1H7_ARATH,A0A1P8B1N0_ARATH,A0A1P8B1J3_ARATH Polyadenylate-binding protein-interacting protein 7 (PABP-interacting protein 7) (Poly(A)-binding protein-interacting protein 7) (PAM2-containing protein CID7) (Protein CTC-INTERACTING DOMAIN 7),CTC-interacting domain 7 62147,54087,44859,46732 Polyadenylate-binding protein-interacting protein 7 (PABP-interacting protein 7) (Poly(A)-binding protein-interacting protein 7) (PAM2-containing protein CID7) (Protein CTC-INTERACTING DOMAIN 7),CTC-interacting domain 7 mRNA binding [GO:0003729] TISSUE SPECIFICITY: Expressed in cauline leaves, stems, rosette leaves, immature siliques and primary inflorescences. {ECO:0000269|PubMed:18796636}. locus:2057775; AT2G26280 smr domain containing protein Os06g0199200 protein (Smr domain-containing protein-like) (cDNA clone:J013029I07, full insert sequence) (cDNA clone:J013072I01, full insert sequence) (cDNA clone:J013120N16, full insert sequence),Os06g0199200 protein (Fragment),Os02g0780550 protein Q69K57,A0A0P0WTJ5,A0A0P0WU40,A0A0P0VQF3 Q69K57_ORYSJ,A0A0P0WTJ5_ORYSJ,A0A0P0WU40_ORYSJ,A0A0P0VQF3_ORYSJ B1172G12.23-1 Os06g0199200 OJ1147_D11.1-1 OsJ_20464 OSNPB_060199200,Os06g0199200 OSNPB_060199200,Os02g0780550 OSNPB_020780550 ENOG411EMDF A0A1P8AWF5 A0A1P8AWF5_ARATH Putative methyltransferase family protein 24703 Putative methyltransferase family protein methyltransferase activity [GO:0008168] Putative methyltransferase Os02g0120300 protein Q6YUS4 Q6YUS4_ORYSJ Os02g0120300 Os02g0120300 OJ1020_C02.4 OsJ_05156 OSJNBb0088N06.13 OSNPB_020120300 ENOG411EMDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase Os06g0101100 protein (Tumor-related protein-like) Q5VMF1 Q5VMF1_ORYSJ Os06g0101100 B1460A05.23 OsJ_19795 OSJNBa0075G19.1 OSNPB_060101100 ENOG411EMDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EMDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411ECFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7A7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0890500 protein,Os01g0890400 protein Q5N832,A0A0P0VBG5 Q5N832_ORYSJ,A0A0P0VBG5_ORYSJ Os01g0890500 B1099D03.54 OsJ_04363 OSNPB_010890500,Os01g0890400 OSNPB_010890400 ENOG411ECFB PAT08,PAT09 Q9SB58,Q8VYS8 ZDH19_ARATH,ZDH24_ARATH Protein S-acyltransferase 8 (EC 2.3.1.225) (Probable palmitoyltransferase At4g24630) (Zinc finger DHHC domain-containing protein At4g24630),Probable protein S-acyltransferase 9 (EC 2.3.1.225) (Probable palmitoyltransferase At5g50020) (Zinc finger DHHC domain-containing protein At5g50020) FUNCTION: S-acyltransferase involved in protein lipid modification. {ECO:0000269|PubMed:22968831, ECO:0000269|Ref.6}.,FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.5}. 2.3.1.225; 2.3.1.225 46747,47105 Protein S-acyltransferase 8 (EC 2.3.1.225) (Probable palmitoyltransferase At4g24630) (Zinc finger DHHC domain-containing protein At4g24630),Probable protein S-acyltransferase 9 (EC 2.3.1.225) (Probable palmitoyltransferase At5g50020) (Zinc finger DHHC domain-containing protein At5g50020) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] TISSUE SPECIFICITY: Expressed in flowers and pollen. {ECO:0000269|PubMed:22968831}.,TISSUE SPECIFICITY: Mainly expressed in seeds. {ECO:0000269|PubMed:22968831}. locus:2121949;,locus:2170046; AT4G24630,AT5G50020 zinc finger NA NA NA NA NA NA NA ENOG411E7IN Q9SQT5 Q9SQT5_ARATH At3g06320 (At5g18790) (Putative 50S ribosomal protein L33) (Ribosomal protein L33 family protein) (Ribosomal protein L33-like) 6958 At3g06320 (At5g18790) (Putative 50S ribosomal protein L33) (Ribosomal protein L33 family protein) (Ribosomal protein L33-like) mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2081086;locus:2144920; AT3G06320AT5G18790; Ribosomal protein L33 Os05g0452600 protein (Os05g0513500 protein) Q0DHP9 Q0DHP9_ORYSJ Os05g0452600 Os05g0513500 Os05g0452600 OsJ_19181 OSNPB_050452600 OSNPB_050513500 ENOG411E7A1 Q9C9Z5 NDUA1_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT3G08610-MONOMER;MetaCyc:AT3G08610-MONOMER; 7338 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; oxidation-reduction process [GO:0055114] locus:2077813; AT3G08610 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex Os05g0481600 protein (cDNA clone:001-122-A02, full insert sequence) Q5KQI2 Q5KQI2_ORYSJ Os05g0481600 OsJ_18953 OSJNBa0095J22.8 OSNPB_050481600 ENOG411E7A0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0734100 protein) Q6AVT4 Q6AVT4_ORYSJ OSJNBa0027J18.17 LOC_Os03g52370 Os03g0734100 OsJ_12471 OSNPB_030734100 ENOG411ECFY Q9LK26,A0A1I9LNG5 Q9LK26_ARATH,A0A1I9LNG5_ARATH At3g27270 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein 27778,30451 At3g27270 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein),TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein integral component of membrane [GO:0016021] locus:2086508; AT3G27270 TLC NA NA NA NA NA NA NA ENOG411ECFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EJP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dehydrogenase NA NA NA NA NA NA NA ENOG411EJP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7AG CEP9,CEP10,CEP2 A0A1I9LMX5,Q9SKW7,Q3ECM0 PCEP9_ARATH,PCP10_ARATH,PCEP2_ARATH Precursor of CEP9 (PCEP9) [Cleaved into: C-terminally encoded peptide 9.1 (CEP9.1) (CEP9a); C-terminally encoded peptide 9.2 (CEP9.2) (CEP9b); C-terminally encoded peptide 9.3 (CEP9.3) (CEP9c); C-terminally encoded peptide 9.4 (CEP9.4) (CEP9d); C-terminally encoded peptide 9.5 (CEP9.5) (CEP9e)],Precursor of CEP10 (PCEP10) [Cleaved into: C-terminally encoded peptide 10.1 (CEP10.1); C-terminally encoded peptide 10.2 (CEP10.2); C-terminally encoded peptide 10.3 (CEP10.3)],Precursor of CEP2 (PCEP2) [Cleaved into: C-terminally encoded peptide 2.1 (CEP2.1); C-terminally encoded peptide 2.2 (CEP2.2)] FUNCTION: Extracellular signaling peptide that represses primary root growth rate and significantly inhibits lateral root formation. Modulates leaf morphology (PubMed:24179096). Regulates systemic nitrogen (N)-demand signaling. Mediates up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). {ECO:0000269|PubMed:24179096, ECO:0000269|PubMed:25324386}.,FUNCTION: Extracellular signaling peptide that may regulate primary root growth rate and systemic nitrogen (N)-demand signaling. {ECO:0000250|UniProtKB:Q8L8Y3}.,FUNCTION: Extracellular signaling peptide that represses primary root growth rate. Regulates negatively leaves number and flowering, and modulates leaf morphology (PubMed:24179096). Regulates systemic nitrogen (N)-demand signaling. Mediates up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). {ECO:0000269|PubMed:24179096, ECO:0000269|PubMed:25324386}. 26206,14794,14118 Precursor of CEP9 (PCEP9) [Cleaved into: C-terminally encoded peptide 9.1 (CEP9.1) (CEP9a); C-terminally encoded peptide 9.2 (CEP9.2) (CEP9b); C-terminally encoded peptide 9.3 (CEP9.3) (CEP9c); C-terminally encoded peptide 9.4 (CEP9.4) (CEP9d); C-terminally encoded peptide 9.5 (CEP9.5) (CEP9e)],Precursor of CEP10 (PCEP10) [Cleaved into: C-terminally encoded peptide 10.1 (CEP10.1); C-terminally encoded peptide 10.2 (CEP10.2); C-terminally encoded peptide 10.3 (CEP10.3)],Precursor of CEP2 (PCEP2) [Cleaved into: C-terminally encoded peptide 2.1 (CEP2.1); C-terminally encoded peptide 2.2 (CEP2.2)] apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; nitrate import [GO:1902025]; regulation of lateral root development [GO:2000023]; regulation of leaf morphogenesis [GO:1901371]; regulation of root development [GO:2000280]; response to ammonium ion [GO:0060359]; response to auxin [GO:0009733]; response to nitrogen compound [GO:1901698]; response to osmotic stress [GO:0006970]; response to potassium ion [GO:0035864]; root development [GO:0048364],apoplast [GO:0048046]; hormone activity [GO:0005179]; nitrate import [GO:1902025]; regulation of root development [GO:2000280]; root development [GO:0048364],apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; nitrate import [GO:1902025]; regulation of leaf morphogenesis [GO:1901371]; regulation of root development [GO:2000280]; regulation of shoot system development [GO:0048831]; response to ammonium ion [GO:0060359]; response to nitrate starvation [GO:0090548]; response to osmotic stress [GO:0006970]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed in lateral root primordia and in lateral roots excluding the meristem region. Also present in the aerial tissues, such as leaf petioles and the shoot apex region. {ECO:0000269|PubMed:25324386}.,TISSUE SPECIFICITY: Mostly expressed in roots (PubMed:18315543). Present in cotyledons, shoot apical meristem (SAM), leaves, inflorescence stems and flowers (PubMed:24179095). {ECO:0000269|PubMed:18315543, ECO:0000269|PubMed:24179095}. locus:2098695;,locus:504956267; AT3G50610,AT1G36045,AT1G59835 NA NA NA NA NA NA NA NA ENOG411E7AF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) OSJNBa0013K16.16 protein (Os04g0586100 protein) Q7XP51 Q7XP51_ORYSJ Os04g0586100 Os04g0586100 OsJ_15937 OSJNBa0013K16.16 OSNPB_040586100 ENOG411EDZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0272601 protein,Os01g0156600 protein,Os08g0272950 protein,Os03g0373200 protein B9G006,A0A0P0UYH1,A0A0P0XE00,A0A0P0VYS8 B9G006_ORYSJ,A0A0P0UYH1_ORYSJ,A0A0P0XE00_ORYSJ,A0A0P0VYS8_ORYSJ Os08g0272601 OsJ_26695 OSNPB_080272601,Os01g0156600 OSNPB_010156600,Os08g0272950 OSNPB_080272950,Os03g0373200 OSNPB_030373200 ENOG411EDZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide methionine sulfoxide reductase NA NA NA NA NA NA NA ENOG411EDZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: gliotoxin biosynthesis protein GliK NA NA NA NA NA NA NA ENOG411EDZU CAR2 Q9C8Y2 CAR2_ARATH Protein C2-DOMAIN ABA-RELATED 2 FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). {ECO:0000250|UniProtKB:Q9FHP6, ECO:0000250|UniProtKB:Q9LVH4}. 19995 Protein C2-DOMAIN ABA-RELATED 2 nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547] locus:2201497; AT1G66360 C2 domain NA NA NA NA NA NA NA ENOG411EDZT CPK18 Q1PE17,F4JNY4 CDPKI_ARATH,F4JNY4_ARATH Calcium-dependent protein kinase 18 (EC 2.7.11.1),Calcium-dependent protein kinase 18 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 60214,63251 Calcium-dependent protein kinase 18 (EC 2.7.11.1),Calcium-dependent protein kinase 18 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672] locus:2135174; AT4G36070 Calcium-dependent protein kinase 18 NA NA NA NA NA NA NA ENOG411EDZW Q93YW8,Q9FK75,F4JSC9 GDL65_ARATH,GDL82_ARATH,F4JSC9_ARATH GDSL esterase/lipase At4g18970 (EC 3.1.1.-) (Extracellular lipase At4g18970),GDSL esterase/lipase At5g45670 (EC 3.1.1.-) (Extracellular lipase At5g45670),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:GQT-1351-MONOMER;,ARA:AT5G45670-MONOMER; 3.1.1.- 39598,39576,45267 GDSL esterase/lipase At4g18970 (EC 3.1.1.-) (Extracellular lipase At4g18970),GDSL esterase/lipase At5g45670 (EC 3.1.1.-) (Extracellular lipase At5g45670),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2171948;,locus:2117159; AT4G18970,AT5G45670 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411EDZV RVE5 C0SVG5 RVE5_ARATH Protein REVEILLE 5 FUNCTION: Probable transcription factor. {ECO:0000250}. 33890 Protein REVEILLE 5 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:2124928; AT4G01280 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EDZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hint module NA NA NA NA NA NA NA ENOG411EDZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EDZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411EDZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os07g0600900 protein,Os01g0889101 protein Q8GS59,Q5N841 Q8GS59_ORYSJ,Q5N841_ORYSJ OJ1634_B10.125 OJ2013_G04.103 Os07g0600900 OSNPB_070600900,B1099D03.38 Os01g0889101 OSNPB_010889101 ENOG411EDZM MHK7.3 Q9FKS6 Q9FKS6_ARATH Emb|CAB62340.1 30698 Emb|CAB62340.1 locus:2164461; AT5G40800 NA NA NA NA NA NA NA NA ENOG411EDZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDZI arf30 Q9XIL0,Q9SJP7 Q9XIL0_ARATH,Q9SJP7_ARATH Auxin response factor 30 (Cupredoxin superfamily protein) (Uncharacterized protein At2g15770),Expressed protein (Glycine-rich protein) 33198,12140 Auxin response factor 30 (Cupredoxin superfamily protein) (Uncharacterized protein At2g15770),Expressed protein (Glycine-rich protein) integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2044621;,locus:2047203; AT2G15770,AT2G15340 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EDZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SpoU rRNA Methylase family NA NA NA NA NA NA NA ENOG411EDZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EDZE Q570Q8 DDPS5_ARATH Dehydrodolichyl diphosphate synthase 5 (Dedol-PP synthase 5) (EC 2.5.1.-) FUNCTION: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. ARA:AT5G58784-MONOMER; 2.5.1.- 34893 Dehydrodolichyl diphosphate synthase 5 (Dedol-PP synthase 5) (EC 2.5.1.-) cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; polyprenyltransferase activity [GO:0002094]; polyprenol biosynthetic process [GO:0016094]; protein glycosylation [GO:0006486] locus:505006702; AT5G58784 Putative undecaprenyl diphosphate synthase NA NA NA NA NA NA NA ENOG411EDZD SWEET8 Q8LFH5 SWET8_ARATH Bidirectional sugar transporter SWEET8 (AtSWEET8) (Protein RUPTURED POLLEN GRAIN 1) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 8) DISRUPTION PHENOTYPE: Dramatically reduced fertility due to a postmeiotic rupture of microspores. {ECO:0000269|PubMed:18434608}. FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. Required, in pollen, for microspore cell integrity and primexine pattern formation (PubMed:18434608, PubMed:25988582). {ECO:0000250|UniProtKB:Q8L9J7, ECO:0000269|PubMed:18434608, ECO:0000303|PubMed:25988582}. R-ATH-189200; 26886 Bidirectional sugar transporter SWEET8 (AtSWEET8) (Protein RUPTURED POLLEN GRAIN 1) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 8) integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; sugar transmembrane transporter activity [GO:0051119]; callose deposition in cell wall [GO:0052543]; carbohydrate transport [GO:0008643]; pollen development [GO:0009555]; pollen exine formation [GO:0010584]; pollen wall assembly [GO:0010208]; protein homooligomerization [GO:0051260] DEVELOPMENTAL STAGE: Expressed during anther development in tapetal cells and microsporocytes during meiosis. When the tapetum degenerates, detected only in pollen grains. {ECO:0000269|PubMed:18434608}. TISSUE SPECIFICITY: Expressed in inflorescences, embryo sacs and pollen, and at a lower level in stems. Barely detected in roots, leaves and seedlings. {ECO:0000269|PubMed:16299181, ECO:0000269|PubMed:18434608}. locus:2173782; AT5G40260 Sugar efflux transporter for intercellular exchange NA NA NA NA NA NA NA ENOG411EDZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: 6-phosphogluconolactonase NA NA NA NA NA NA NA ENOG411EDZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411EDZA CYP79F1,CYP79F2 Q949U1,Q9FUY7 C79F1_ARATH,C79F2_ARATH Dihomomethionine N-hydroxylase (EC 1.14.14.42) (Cytochrome P450 79F1) (Protein BUSHY 1) (Protein SUPERSHOOT 1) (Trihomomethionine N-hydroxylase),Hexahomomethionine N-hydroxylase (EC 1.14.14.42) (Cytochrome P450 79F2) DISRUPTION PHENOTYPE: Plants have a bushy phenotype with crinkled leaves and retarded vascularization. {ECO:0000269|PubMed:11226190, ECO:0000269|PubMed:12609033}.,DISRUPTION PHENOTYPE: Plants show a slight lateral root growth reduction. {ECO:0000269|Ref.4}. Increased branching; Crinkled leaves; Abnormal vascularization-V. Sundaresan-2001 FUNCTION: Catalyzes the conversion of the short chain elongated methionines di-, tri-, and tetrahomomethionine to their respective aldoximes 5-methylthiopentanaldoxime, 6-methylthiohexanaldoxime, and 7-methylheptanaldoxime. {ECO:0000269|PubMed:11133994, ECO:0000269|PubMed:11226190, ECO:0000269|PubMed:15194821}.,FUNCTION: Catalyzes the conversion of the long chain elongated methionines penta- and hexahomomethionine to their corresponding aldoximes 8-methylthiooctanaldoxime and 9-methylthiononanaldoxime. {ECO:0000269|PubMed:15194821, ECO:0000269|Ref.4}. ARA:AT1G16410-MONOMER;MetaCyc:AT1G16410-MONOMER;,ARA:AT1G16400-MONOMER;MetaCyc:AT1G16400-MONOMER; 1.14.14.42 61695,61432 Dihomomethionine N-hydroxylase (EC 1.14.14.42) (Cytochrome P450 79F1) (Protein BUSHY 1) (Protein SUPERSHOOT 1) (Trihomomethionine N-hydroxylase),Hexahomomethionine N-hydroxylase (EC 1.14.14.42) (Cytochrome P450 79F2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; glucosinolate biosynthetic process [GO:0019761]; indoleacetic acid biosynthetic process [GO:0009684]; response to insect [GO:0009625],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; glucosinolate biosynthetic process [GO:0019761]; indoleacetic acid biosynthetic process [GO:0009684] DEVELOPMENTAL STAGE: Expressed above the root elongation zone, but not in the root primordium. {ECO:0000269|PubMed:15194821}. TISSUE SPECIFICITY: Highly expressed in cotyledons, leaves, stems and siliques. Detected in flowers and lateral roots, but not in the main root. Expressed only in the vascular bundles in apical plant parts. {ECO:0000269|PubMed:11133994, ECO:0000269|PubMed:11226190, ECO:0000269|PubMed:12609033}.,TISSUE SPECIFICITY: Highly expressed in hypocotyl and roots. Lower expression in siliques, stems and leaves. Barely detectable in flowers. Expressed only in the vascular bundles in apical plant parts. {ECO:0000269|PubMed:11226190, ECO:0000269|Ref.4}. locus:2032890;,locus:2032865; AT1G16410,AT1G16400 cytochrome P450 family 79 subfamily F polypeptide NA NA NA NA NA NA NA ENOG411EDZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411EDZ9 FUT2 O81053,A0A1P8B2Z4,A0A1P8B2Z3 FUT2_ARATH,A0A1P8B2Z4_ARATH,A0A1P8B2Z3_ARATH Fucosyltransferase 2 (AtFUT2) (EC 2.4.1.-),Fucosyltransferase 2 FUNCTION: May be involved in cell wall biosynthesis. May act as a fucosyltransferase. PATHWAY: Protein modification; protein glycosylation. ARA:AT2G03210-MONOMER; 2.4.1.- 61571,65162,65463 Fucosyltransferase 2 (AtFUT2) (EC 2.4.1.-),Fucosyltransferase 2 Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969],integral component of membrane [GO:0016021]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall biogenesis [GO:0042546] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and seedlings. {ECO:0000269|PubMed:11743104}. locus:2056901; AT2G03210 Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411EDZ8 BOR3 Q93Z13 BOR3_ARATH Probable boron transporter 3 FUNCTION: Probable boron transporter. Boron is essential for maintaining the integrity of plants cell walls (By similarity). {ECO:0000250}. R-ATH-1237044;R-ATH-1247673;R-ATH-425381; 80768 Probable boron transporter 3 integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; anion transmembrane transporter activity [GO:0008509]; anion:anion antiporter activity [GO:0015301]; inorganic anion exchanger activity [GO:0005452]; anion transmembrane transport [GO:0098656]; regulation of intracellular pH [GO:0051453] locus:2081056; AT3G06450 HCO3- transporter family NA NA NA NA NA NA NA ENOG411EDZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDZ1 Q9C9V0,Q9ZUE4 GDL30_ARATH,GDL5_ARATH GDSL esterase/lipase At1g73610 (EC 3.1.1.-) (Extracellular lipase At1g73610),GDSL esterase/lipase At1g23500 (EC 3.1.1.-) (Extracellular lipase At1g23500) ARA:AT1G73610-MONOMER;,ARA:AT1G23500-MONOMER; 3.1.1.- 37503,37472 GDSL esterase/lipase At1g73610 (EC 3.1.1.-) (Extracellular lipase At1g73610),GDSL esterase/lipase At1g23500 (EC 3.1.1.-) (Extracellular lipase At1g23500) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] locus:2027839;,locus:2028868; AT1G73610,AT1G23500 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EDZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411EDZ3 PHO1-H4,PHO1-H8,PHO1-H7 Q6R8G6,Q6R8G2,Q6R8G3,A0A1P8ASQ2,A0A1P8APE1 PHO14_ARATH,PHO18_ARATH,PHO17_ARATH,A0A1P8ASQ2_ARATH,A0A1P8APE1_ARATH Phosphate transporter PHO1 homolog 4 (Protein PHO1 homolog 4) (AtPHO1;H4),Phosphate transporter PHO1 homolog 8 (Protein PHO1 homolog 8) (AtPHO1;H8),Phosphate transporter PHO1 homolog 7 (Protein PHO1 homolog 7) (AtPHO1;H7),EXS (ERD1/XPR1/SYG1) family protein shb1 mutant shows a mild phenotype of small seed and has no obvious phenotype of adult plant. shb1 also has a short hypocotyl under blue light and a late flowering phenotype under both long and short days.,long-hypocotyl under red far-red and blue light conditions. Mutantion affects pigment accumulation and CHLOROPHYLL a/b BINDING PROTEIN3 or CHALCONE SYNTHASE expression. Promotes phyA degradation under far-red light. Slightly reduced seed mass; Short hypocotyl under blue light-M. Ni-2009 FUNCTION: May transport inorganic phosphate (Pi). {ECO:0000250}. 86986,87396,87333,81171,66039 Phosphate transporter PHO1 homolog 4 (Protein PHO1 homolog 4) (AtPHO1;H4),Phosphate transporter PHO1 homolog 8 (Protein PHO1 homolog 8) (AtPHO1;H8),Phosphate transporter PHO1 homolog 7 (Protein PHO1 homolog 7) (AtPHO1;H7),EXS (ERD1/XPR1/SYG1) family protein cytosol [GO:0005829]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; endosperm development [GO:0009960]; phosphate ion transport [GO:0006817]; positive regulation of cell size [GO:0045793]; red or far-red light signaling pathway [GO:0010017]; regulation of gene expression [GO:0010468]; regulation of seed development [GO:0080050]; regulation of seed growth [GO:0080113],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; phosphate ion transport [GO:0006817],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in root epidermis and cortex, leaf hydathodes, pollen grains and stigma apex. {ECO:0000269|PubMed:15122012}.,TISSUE SPECIFICITY: Expressed in root epidermis, leaf hydathodes, trichomes and petioles, stem vascular cylinder, receptacle, stigma apex and pollen grains. {ECO:0000269|PubMed:15122012}.,TISSUE SPECIFICITY: Expressed in root tips, vascular cylinders of roots and filaments, leaf hydathodes, stem, receptacle and stigma apex. {ECO:0000269|PubMed:15122012}. locus:2138038;,locus:2206742;,locus:2200575; AT4G25350,AT1G35350,AT1G26730 May transport inorganic phosphate (Pi) (By similarity) NA NA NA NA NA NA NA ENOG411EDZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411DPUN RPS8A,RPS8B Q93VG5,Q9FIF3 RS81_ARATH,RS82_ARATH 40S ribosomal protein S8-1,40S ribosomal protein S8-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 24994,23773 40S ribosomal protein S8-1,40S ribosomal protein S8-2 cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2149194;,locus:2168479; AT5G20290,AT5G59240 40S ribosomal protein S8 40S ribosomal protein S8 P49199,Q0JDZ7 RS8_ORYSJ,Q0JDZ7_ORYSJ RPS8 Os02g0489400 LOC_Os02g28810 OsJ_06781 OSJNBa0048K16.2 P0483C08.42,Os04g0349500 Os04g0349500 OsJ_14370 OSJNBa0038P21.4 OSNPB_040349500 ENOG411ECF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Coatomer WD associated region NA NA NA NA NA NA NA ENOG411DR3R Q9FHL8 Q9FHL8_ARATH Disease resistance protein-like (Leucine-rich repeat (LRR) family protein) (Uncharacterized protein At5g23400) 64018 Disease resistance protein-like (Leucine-rich repeat (LRR) family protein) (Uncharacterized protein At5g23400) cell wall [GO:0005618]; plasmodesma [GO:0009506] locus:2154463; AT5G23400 Leucine rich repeat N-terminal domain Os04g0677200 protein (Fragment) A0A0P0WGK4 A0A0P0WGK4_ORYSJ Os04g0677200 OSNPB_040677200 ENOG411E6MC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6MN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0516100 protein Q75IJ7 Q75IJ7_ORYSJ Os05g0516100 Os05g0516100 B1130G10.5 OsJ_19201 OSNPB_050516100 P0022D06.19 ENOG411E1J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA metal transporter Nramp6 Metal transporter Nramp1 (OsNramp1),Os07g0258400 protein (Fragment) Q0D7E4,A0A0P0X4D2 NRAM1_ORYSJ,A0A0P0X4D2_ORYSJ NRAMP1 Os07g0258400 LOC_Os07g15460 OJ1354_H07.109 OsJ_23752,Os07g0258400 OSNPB_070258400 FUNCTION: Probable metal transporter that may participate in the control of iron homeostasis. {ECO:0000269|PubMed:10769179}. ENOG411E1J6 MJH22.10 Q9FM48,Q29Q13 Q9FM48_ARATH,Q29Q13_ARATH Emb|CAB81845.1 (Transmembrane protein),At5g63040 (Transmembrane protein) 41010,40661 Emb|CAB81845.1 (Transmembrane protein),At5g63040 (Transmembrane protein) integral component of membrane [GO:0016021],chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2166330; AT5G63040 NA Os01g0704200 protein B9EZ19 B9EZ19_ORYSJ Os01g0704200 OsJ_03171 OSNPB_010704200 ENOG411E1J7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0341600 protein (Fragment) A0A0P0WWK1 A0A0P0WWK1_ORYSJ Os06g0341600 OSNPB_060341600 ENOG411E1J0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0182832 protein (Fragment) A0A0P0UYY1 A0A0P0UYY1_ORYSJ Os01g0182832 OSNPB_010182832 ENOG411E1J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0005 Os11g0581900 protein (cDNA clone:J023020E21, full insert sequence) Q2R230 Q2R230_ORYSJ Os11g0581900 LOC_Os11g37200 Os11g0581900 OsJ_34380 OSNPB_110581900 ENOG411E1J2 Q9SA50 Q9SA50_ARATH At1g16520 (F3O9.32 protein) (Interactor of constitutive active ROPs protein) (Uncharacterized protein At1g16520/F19K19_17) 36426 At1g16520 (F3O9.32 protein) (Interactor of constitutive active ROPs protein) (Uncharacterized protein At1g16520/F19K19_17) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2017933; AT1G16520 NA Os03g0659800 protein A0A0P0W1L3 A0A0P0W1L3_ORYSJ Os03g0659800 OSNPB_030659800 ENOG411E1J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF702) Os08g0547600 protein A0A0P0XJ12 A0A0P0XJ12_ORYSJ Os08g0547600 OSNPB_080547600 ENOG411E1JX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os01g0802850 protein (Phosphate/phosphoenolpyruvate translocator protein-like),Os05g0494500 protein (cDNA clone:006-212-H01, full insert sequence),Os11g0139400 protein (Phosphate translocator, putative, expressed) (cDNA clone:002-130-B12, full insert sequence),Os12g0136100 protein (Phosphate translocator, putative, expressed),Os03g0301900 protein,Os03g0622700 protein,Os10g0486200 protein Q8S2F4,Q65X78,Q2RAS8,Q2QY17,A0A0N7KH43,A0A0P0W0B5,A0A0N7KRZ4 Q8S2F4_ORYSJ,Q65X78_ORYSJ,Q2RAS8_ORYSJ,Q2QY17_ORYSJ,A0A0N7KH43_ORYSJ,A0A0P0W0B5_ORYSJ,A0A0N7KRZ4_ORYSJ Os01g0802850 Os01g0802850 OsJ_03783 OSNPB_010802850 P0003D09.42 P0034E02.5,Os05g0494500 OJ1579_G03.4 OsJ_19045 OSNPB_050494500,Os11g0139400 LOC_Os11g04380 Os11g0139400 OSNPB_110139400,Os12g0136100 LOC_Os12g04170 OSNPB_120136100,Os03g0301900 OSNPB_030301900,Os03g0622700 OSNPB_030622700,Os10g0486200 OSNPB_100486200 ENOG411E1JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region Zinc-finger homeodomain protein 3 (OsZHD3),Os12g0208900 protein Q2QW44,A0A0P0Y878 ZHD3_ORYSJ,A0A0P0Y878_ORYSJ ZHD3 Os12g0208900 LOC_Os12g10630,Os12g0208900 OSNPB_120208900 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411E1JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin protein ligase RIE1-like NA NA NA NA NA NA NA ENOG411E1JT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-conjugating enzyme E2 NA NA NA NA NA NA NA ENOG411E1JV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411E1JW A0A1P8BA18,F4JXH5 A0A1P8BA18_ARATH,F4JXH5_ARATH Uncharacterized protein 135922,130196 Uncharacterized protein locus:2143980; AT5G60150 NA Os12g0102700 protein,Os11g0103100 protein (Fragment) Q0IQS6,A0A0P0XYC0 Q0IQS6_ORYSJ,A0A0P0XYC0_ORYSJ Os12g0102700 Os12g0102700 OSNPB_120102700,Os11g0103100 OSNPB_110103100 ENOG411E1JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integrase core domain NA NA NA NA NA NA NA ENOG411E1JQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Armadillo/beta-catenin-like repeat Armadillo/beta-catenin-like repeat family protein, expressed (Os03g0244700 protein) (cDNA clone:J023086N09, full insert sequence) Q10P70 Q10P70_ORYSJ Os03g0244700 LOC_Os03g14090 Os03g0244700 OsJ_10113 OSNPB_030244700 ENOG411E1JR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os03g0128000 protein,Fasciclin-like arabinogalactan protein 8, putative, expressed (Os03g0128000 protein) (Putative endosperm specific protein) Q0DVI8,Q8S5V0 Q0DVI8_ORYSJ,Q8S5V0_ORYSJ Os03g0128000 Os03g0128000 OSNPB_030128000,Os03g0128000 LOC_Os03g03600 OJ1015F07.17 OSNPB_030128000 ENOG411E1JS Q9SRQ0,Q9LF51 Q9SRQ0_ARATH,Q9LF51_ARATH Mediator of RNA polymerase II transcription subunit-like protein (T21P5.12 protein),Glutamine-rich protein (Mediator of RNA polymerase II transcription subunit-like protein) (Putative glutamine-rich protein) 41461,42555 Mediator of RNA polymerase II transcription subunit-like protein (T21P5.12 protein),Glutamine-rich protein (Mediator of RNA polymerase II transcription subunit-like protein) (Putative glutamine-rich protein) locus:2099614;,locus:2157487; AT3G03460,AT5G17510 NA Os12g0465800 protein,Os12g0465700 protein A0A0P0YA22,A0A0P0Y9Z4 A0A0P0YA22_ORYSJ,A0A0P0Y9Z4_ORYSJ Os12g0465800 OSNPB_120465800,Os12g0465700 OSNPB_120465700 ENOG411E1JN PPOX2 Q9ZPY1 PPOX2_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 (AtPPOX1) (EC 1.4.3.5) FUNCTION: Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). Has an in vitro catalytic efficiency for PNP approximately 300-fold lower than that of PPOX1. {ECO:0000269|Ref.5}. PATHWAY: Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate: step 1/1.; PATHWAY: Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxine 5'-phosphate: step 1/1. 1.4.3.5 22620 Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 (AtPPOX1) (EC 1.4.3.5) FMN binding [GO:0010181]; pyridoxamine-phosphate oxidase activity [GO:0004733]; pyridoxal 5'-phosphate salvage [GO:0009443]; pyridoxine biosynthetic process [GO:0008615] locus:2039949; AT2G46580 Pyridoxamine 5'-phosphate oxidase Os03g0115500 protein (Pyridoxine 5'-phosphate oxidase, putative, expressed) (cDNA clone:J023002H17, full insert sequence),Os03g0115500 protein Q10SP1,A0A0P0VSA2 Q10SP1_ORYSJ,A0A0P0VSA2_ORYSJ Os03g0115500 LOC_Os03g02450 OsJ_09166 OSNPB_030115500,Os03g0115500 OSNPB_030115500 ENOG411E1JI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0436300 protein (cDNA clone:J033120O07, full insert sequence) Q69PE6 Q69PE6_ORYSJ Os09g0436300 Os09g0436300 OJ1238_G07.14 OSNPB_090436300 ENOG411E1JK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein A0A0P0V5R2 A0A0P0V5R2_ORYSJ Os01g0640700 OSNPB_010640700 ENOG411E1JD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0231800 protein (cDNA clone:002-130-G09, full insert sequence) Q84YL5 Q84YL5_ORYSJ Os07g0231800 OsJ_23621 OSJNBa0086N05.123 OSNPB_070231800 ENOG411E1JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os03g0844000 protein (Putative pentatricopeptide repeat domain contianing protein) (cDNA clone:J013031L22, full insert sequence),Os03g0844000 protein (Fragment) Q75LD1,A0A0P0W5G9 Q75LD1_ORYSJ,A0A0P0W5G9_ORYSJ OSJNBa0032G11.12 Os03g0844000 OSNPB_030844000,Os03g0844000 OSNPB_030844000 ENOG411E1JA Q8GWB4,A0A1P8B211 Q8GWB4_ARATH,A0A1P8B211_ARATH At2g43110 (U3 containing 90S pre-ribosomal complex subunit) (Uncharacterized protein At2g43110),U3 containing 90S pre-ribosomal complex subunit 32571,25961 At2g43110 (U3 containing 90S pre-ribosomal complex subunit) (Uncharacterized protein At2g43110),U3 containing 90S pre-ribosomal complex subunit 90S preribosome [GO:0030686]; nucleus [GO:0005634] locus:2041011; AT2G43110 Inherit from KOG: cms1 ribosomal small subunit homolog (yeast) OSJNBa0020I02.12 protein (Os04g0348100 protein) (cDNA clone:J033126A18, full insert sequence) Q7XVZ4 Q7XVZ4_ORYSJ Os04g0348100 Os04g0348100 OSJNBa0020I02.12 OSNPB_040348100 ENOG411E1JC Q5EAF4,Q9SS96,A0A1P8BFM5 Q5EAF4_ARATH,Q9SS96_ARATH,A0A1P8BFM5_ARATH Aldose 1-epimerase family protein (At5g14500),F4P13.13 protein (Galactose mutarotase-like superfamily protein) (Uncharacterized protein At3g01590),Aldose 1-epimerase family protein ARA:GQT-1217-MONOMER;,ARA:GQT-1067-MONOMER; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Glycolysis / Gluconeogenesis (00010),Metabolic pathways (01100) 34788,34739,37728 Aldose 1-epimerase family protein (At5g14500),F4P13.13 protein (Galactose mutarotase-like superfamily protein) (Uncharacterized protein At3g01590),Aldose 1-epimerase family protein carbohydrate binding [GO:0030246]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975] locus:2145748;,locus:2084233; AT5G14500,AT3G01590 Aldose 1-epimerase family protein NA NA NA NA NA NA NA ENOG411EGWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0541300 protein Q7XJ19 Q7XJ19_ORYSJ Os09g0541300 B1274F11.34 OSNPB_090541300 P0478E02.7 ENOG411EGWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EGWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class Os11g0497875 protein (Transposon protein, putative, CACTA, En/Spm sub-class),Os08g0563750 protein,Os07g0242282 protein,Os04g0195954 protein,Os02g0502850 protein,Os06g0521766 protein,Os06g0521633 protein,Os04g0196076 protein,Os03g0572800 protein Q2R3X5,A0A0P0XJJ1,A0A0P0X4A4,A0A0P0W821,A0A0P0VJG7,A0A0P0WXF2,A0A0P0WXH7,A0A0P0W740,A0A0P0W0C4 Q2R3X5_ORYSJ,A0A0P0XJJ1_ORYSJ,A0A0P0X4A4_ORYSJ,A0A0P0W821_ORYSJ,A0A0P0VJG7_ORYSJ,A0A0P0WXF2_ORYSJ,A0A0P0WXH7_ORYSJ,A0A0P0W740_ORYSJ,A0A0P0W0C4_ORYSJ Os11g0497875 LOC_Os11g30440 OSNPB_110497875,Os08g0563750 OSNPB_080563750,Os07g0242282 OSNPB_070242282,Os04g0195954 OSNPB_040195954,Os02g0502850 OSNPB_020502850,Os06g0521766 OSNPB_060521766,Os06g0521633 OSNPB_060521633,Os04g0196076 OSNPB_040196076,Os03g0572800 OSNPB_030572800 ENOG411EGWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0366400 protein) (cDNA clone:J033061I10, full insert sequence),Os10g0366400 protein Q339D9,A0A0P0XTC0 Q339D9_ORYSJ,A0A0P0XTC0_ORYSJ Os10g0366400 LOC_Os10g22170 Os10g0366400 OSNPB_100366400,Os10g0366400 OSNPB_100366400 ENOG411EGWD F4IIS6 F4IIS6_ARATH Uncharacterized protein 10849 Uncharacterized protein locus:1006230177; AT2G28625 NA NA NA NA NA NA NA NA ENOG411EGWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0228901 protein (Fragment),Os10g0534600 protein (Fragment) A0A0P0VV01,A0A0N7KS47 A0A0P0VV01_ORYSJ,A0A0N7KS47_ORYSJ Os03g0228901 OSNPB_030228901,Os10g0534600 OSNPB_100534600 ENOG411EGWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EGWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0366800 protein,Os12g0618150 protein,Os04g0117700 protein A0A0P0XFA6,A0A0P0YCS0,A0A0P0W6M6 A0A0P0XFA6_ORYSJ,A0A0P0YCS0_ORYSJ,A0A0P0W6M6_ORYSJ Os08g0366800 OSNPB_080366800,Os12g0618150 OSNPB_120618150,Os04g0117700 OSNPB_040117700 ENOG411EGWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0787250 protein C7IZ54 C7IZ54_ORYSJ Os02g0787250 Os02g0787250 OSNPB_020787250 ENOG411EGWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGWX MQB2.7 Q9FM18 Q9FM18_ARATH At5g62750 14243 At5g62750 locus:2170713; AT5G62750 NA NA NA NA NA NA NA NA ENOG411EGWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Spherulation-specific family 4 NA NA NA NA NA NA NA ENOG411EGWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family OSJNBa0019D11.21 protein (Os04g0522100 protein) Q7XUA9 Q7XUA9_ORYSJ Os04g0522100 OsJ_15496 OSJNBa0019D11.21 OSNPB_040522100 ENOG411EGWW rgf3,RGF3 Q6ID76,A0A1P8B009 RGF3_ARATH,A0A1P8B009_ARATH Root meristem growth factor 3 (AtRGF3),Root meristem growth factor DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with other RGF genes. Triple mutant rgf1-rgf2-rgf3 shows a decreased meristematic cell number resulting in a short root phenotype. {ECO:0000269|PubMed:20798316}. FUNCTION: Maintains the postembryonic root stem cell niche. {ECO:0000269|PubMed:20798316}. 12647,10079 Root meristem growth factor 3 (AtRGF3),Root meristem growth factor extracellular space [GO:0005615]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; positive regulation of cell proliferation [GO:0008284]; positive regulation of gene expression [GO:0010628]; regulation of root meristem growth [GO:0010082] TISSUE SPECIFICITY: Expressed only in the quiescent center, the columella stem cells and the innermost layer of central columella cells. {ECO:0000269|PubMed:20798316}. locus:2827444; AT2G04025 NA NA NA NA NA NA NA NA ENOG411EGWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUC173 domain NA NA NA NA NA NA NA ENOG411EGWQ Q84TF7 Q84TF7_ARATH At2g42395 11915 At2g42395 locus:1006230075; AT2G42395 NA NA NA NA NA NA NA NA ENOG411EGWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0298000 protein (Fragment) A0A0P0WW29 A0A0P0WW29_ORYSJ Os06g0298000 OSNPB_060298000 ENOG411EGWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os03g0622500 protein (cDNA clone:J023147K22, full insert sequence),Os08g0203250 protein B7ELK0,A0A0N7KPF5 B7ELK0_ORYSJ,A0A0N7KPF5_ORYSJ Os03g0622500 OSNPB_030622500,Os08g0203250 OSNPB_080203250 ENOG411EGW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGW5 A0JPZ2 A0JPZ2_ARATH At3g62990 (Myelin transcription factor-like protein) 15065 At3g62990 (Myelin transcription factor-like protein) locus:2099247; AT3G62990 NA NA NA NA NA NA NA NA ENOG411EGW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain NA NA NA NA NA NA NA ENOG411EGW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein PHLOEM protein 2-LIKE NA NA NA NA NA NA NA ENOG411EGW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor NA NA NA NA NA NA NA ENOG411EGW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EGW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2V3 RTNLB23,RTNLB22 P0C941,Q8GWH5,A0A1P8AT81 RTNLU_ARATH,RTNLT_ARATH,A0A1P8AT81_ARATH Reticulon-like protein B23 (AtRTNLB23),Reticulon-like protein B22 (AtRTNLB22),Reticulon family protein 16735,17630,12737 Reticulon-like protein B23 (AtRTNLB23),Reticulon-like protein B22 (AtRTNLB22),Reticulon family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:5019474612;,locus:505006229; AT1G16825,AT1G78895 Reticulon-like protein Os08g0225100 protein (Fragment) A0A0P0XDB9 A0A0P0XDB9_ORYSJ Os08g0225100 OSNPB_080225100 ENOG411E2VV AHL25 Q6DBQ1 AHL25_ARATH AT-hook motif nuclear-localized protein 25 (AT-hook protein of GA feedback 1) FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Binds the DNA sequence GNFEI (GA-negative feedback element I) in the GA3OX1 promoter. Binding to GNFEI sequence is required for GA-negative feedback regulation of GA3OX1. {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:17277098}. 30148 AT-hook motif nuclear-localized protein 25 (AT-hook protein of GA feedback 1) nucleus [GO:0005634]; AT DNA binding [GO:0003680]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, floral tips and flowers. {ECO:0000269|PubMed:17277098}. locus:2122148; AT4G35390 Domain of unknown function (DUF296) AT-hook motif nuclear-localized protein Q69PS9 Q69PS9_ORYSJ Os06g0326900 Os06g0326900 OSJNBb0039F24.6 OSNPB_060326900 P0652D10.43 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000256|PIRNR:PIRNR016021}. ENOG411DXCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA NA NA NA NA NA NA NA ENOG411E2VZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Os06g0638900 protein A0A0P0WZH3 A0A0P0WZH3_ORYSJ Os06g0638900 OSNPB_060638900 ENOG411E2VX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain containing protein, expressed (Ap2 domain containing protein) (Os03g0182800 protein) (cDNA clone:J033023E13, full insert sequence) Q7XBH8 Q7XBH8_ORYSJ cap2 LOC_Os03g08460 Os03g0182800 OSNPB_030182800 ENOG411E2VA Q6NMD4 Q6NMD4_ARATH At3g24730 (mRNA splicing factor, thioredoxin-like U5 snRNP) 18318 At3g24730 (mRNA splicing factor, thioredoxin-like U5 snRNP) spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; spliceosomal complex assembly [GO:0000245] locus:2087273; AT3G24730 Thioredoxin-like protein At3g24730 (Os11g0297900 protein) (Thioredoxin-like protein 4B, putative, expressed) (cDNA clone:J013118F01, full insert sequence) Q53MQ0 Q53MQ0_ORYSJ Os11g0297900 LOC_Os11g19220 Os11g0297900 OsJ_33696 OSNPB_110297900 ENOG411E2VI LARP1C,LARP1c Q94K80,A0A1P8B569 LRP1C_ARATH,A0A1P8B569_ARATH La-related protein 1C (AtLARP1c),Winged-helix DNA-binding transcription factor family protein DISRUPTION PHENOTYPE: Impaired abscisic acid- (ABA)-, salicylic acid- (SA)- and jasmonic acid- (MeJA)-induced leaf senescence in detached leaves. {ECO:0000269|PubMed:22965746}. FUNCTION: Promotes leaf senescence mediated by abscisic acid (ABA), salicylic acid (SA) and jasmonic acid (MeJA), probably though the induction of expression of senescence-associated genes (SAGs) and defense-related genes. {ECO:0000269|PubMed:22965746}. 55838,44125 La-related protein 1C (AtLARP1c),Winged-helix DNA-binding transcription factor family protein cytoplasm [GO:0005737]; polysome [GO:0005844]; mRNA binding [GO:0003729]; abscisic acid-activated signaling pathway [GO:0009738]; leaf senescence [GO:0010150]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751],DNA binding [GO:0003677]; RNA binding [GO:0003723] TISSUE SPECIFICITY: Age-dependent accumulation in rosette leaves. {ECO:0000269|PubMed:22965746}. locus:2125334; AT4G35890 La domain NA NA NA NA NA NA NA ENOG411E2VH GDH2 O82179 GCSH2_ARATH Glycine cleavage system H protein 2, mitochondrial FUNCTION: The glycine decarboxylase (GDC) or glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (By similarity). {ECO:0000250}. ARA:AT2G35120-MONOMER;MetaCyc:MONOMER-907; R-ATH-389661;R-ATH-6783984; 17100 Glycine cleavage system H protein 2, mitochondrial glycine cleavage complex [GO:0005960]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glycine decarboxylation via glycine cleavage system [GO:0019464] locus:2063464; AT2G35120 Glycine cleavage system H protein Glycine cleavage system H protein (Fragment),Glycine cleavage system H protein C7IY93,Q6H713,Q655T6 C7IY93_ORYSJ,Q6H713_ORYSJ,Q655T6_ORYSJ Os02g0169700 Os02g0169700 OSNPB_020169700,Os02g0170100 Os02g0170100 OJ1116_A06.24 OSNPB_020170100 P0030G02.14,P0686E06.7-1 P0637D03.44-1 Os06g0667600 OsJ_22296 OSNPB_060667600 FUNCTION: The H protein shuttles the methylamine group of glycine from the P protein to the T protein. {ECO:0000256|RuleBase:RU364055}. ENOG411EF5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EF5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Katanin p80 (WD repeat containing) subunit B 1 NA NA NA NA NA NA NA ENOG411EF5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EF5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os05g0439000 protein Q75HW9 Q75HW9_ORYSJ Os05g0439000 Os05g0439000 OSJNBb0042J17.13 OSNPB_050439000 ENOG411EF5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aryl hydrocarbon receptor nuclear NA NA NA NA NA NA NA ENOG411EF5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PHOsphatase Os02g0599600 protein,Os02g0599901 protein,Os02g0598700 protein (Os02g0599000 protein),Os09g0391700 protein,Os02g0599680 protein,Os02g0599400 protein (Fragment),Os09g0383900 protein A3A8Q8,Q6K5I4,Q6K1U6,Q6H419,A0A0P0VL91,A0A0P0VLF8,A0A0P0XMR7 A3A8Q8_ORYSJ,Q6K5I4_ORYSJ,Q6K1U6_ORYSJ,Q6H419_ORYSJ,A0A0P0VL91_ORYSJ,A0A0P0VLF8_ORYSJ,A0A0P0XMR7_ORYSJ Os02g0599600 OsJ_07399 OSNPB_020599600,OJ1791_B03.10 Os02g0599901 OSNPB_020599901,Os02g0599000 Os02g0598700 OJ1212_D02.21 OsJ_07393 OSJNBa0038P01.19 OSJNBa0038P01.5 OSNPB_020598700 OSNPB_020599000,Os09g0391700 B1175F05.14 OsJ_29236 OSNPB_090391700,Os02g0599680 OSNPB_020599680,Os02g0599400 OSNPB_020599400,Os09g0383900 OSNPB_090383900 ENOG411EF5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease_NS NA NA NA NA NA NA NA ENOG411EF50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411E029 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein Os08g0195900 protein,Os08g0193900 protein (Putative N7 protein) (cDNA clone:002-127-C07, full insert sequence),Os08g0193600 protein Q6Z071,Q6Z1A9,A0A0P0XCL5 Q6Z071_ORYSJ,Q6Z1A9_ORYSJ,A0A0P0XCL5_ORYSJ Os08g0195900 OSNPB_080195900 P0035F08.31 P0412D08.9,Os08g0193900 Os08g0193900 OsJ_26332 OSJNBa0056O06.39 OSNPB_080193900,Os08g0193600 OSNPB_080193600 ENOG411E024 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8NH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LSM domain Os08g0151400 protein (Fragment) Q0J803 Q0J803_ORYSJ Os08g0151400 Os08g0151400 OSNPB_080151400 ENOG411E8NU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E02Y CRRSP38 Q9LRJ9 CRR38_ARATH Cysteine-rich repeat secretory protein 38 27864 Cysteine-rich repeat secretory protein 38 cell wall [GO:0005618]; extracellular region [GO:0005576]; vacuole [GO:0005773]; response to abscisic acid [GO:0009737] locus:2095662; AT3G22060 cysteine-rich repeat secretory protein NA NA NA NA NA NA NA ENOG411E02X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbon-nitrogen hydrolase Os02g0635000 protein (Putative nitrilase 1) (cDNA clone:001-020-C07, full insert sequence) (cDNA clone:J023036G11, full insert sequence) Q6H851 Q6H851_ORYSJ Os02g0635000 Os02g0635000 OJ1626_B09.5 OSNPB_020635000 ENOG411EH2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EH2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: oxidoreductase 2OG-Fe(II) oxygenase family protein Os05g0158600 protein A0A0N7KK69 A0A0N7KK69_ORYSJ Os05g0158600 OSNPB_050158600 ENOG411EH2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E1J8 Q5BIV3 PPR35_ARATH Pentatricopeptide repeat-containing protein At1g11900 41622 Pentatricopeptide repeat-containing protein At1g11900 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2008955; AT1G11900 Pentatricopeptide repeat-containing protein Os05g0481800 protein (cDNA clone:002-174-D06, full insert sequence) (cDNA clone:J023139M01, full insert sequence) B7ER51 B7ER51_ORYSJ Os05g0481800 OSNPB_050481800 ENOG411E1J9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydroxymethylglutaryl-coenzyme A reductase 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34),Os02g0713900 protein (cDNA clone:J023019C15, full insert sequence) Q0DY59,B7EGJ1 HMDH1_ORYSJ,B7EGJ1_ORYSJ HMG1 Os02g0713900 LOC_Os02g48330,Os02g0713900 OSNPB_020713900 FUNCTION: Catalyzes the synthesis of mevalonate. The specific precursor of all isoprenoid compounds present in plants. ENOG411E8N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Neurofilament triplet M protein-like protein (Os07g0164800 protein) (cDNA clone:J023072F12, full insert sequence) Q8LHS0 Q8LHS0_ORYSJ P0039H02.109 Os07g0164800 OsJ_23202 OSNPB_070164800 ENOG411E1J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E0P7 PDE334 Q42139 Q42139_ARATH AT4g32260/F10M6_100 (ATP synthase beta chain (Subunit II)) (EC 3.6.1.34) (ATPase, F0 complex, subunit B/B', bacterial/chloroplast) (H+-transporting ATP synthase chain 9-like protein) (H+-transporting ATP synthase chain9 - like protein) Seedling lethal (inferred from pigment defect); Albino embryos-D. Meinke-2011 3.6.1.34 23918 AT4g32260/F10M6_100 (ATP synthase beta chain (Subunit II)) (EC 3.6.1.34) (ATPase, F0 complex, subunit B/B', bacterial/chloroplast) (H+-transporting ATP synthase chain 9-like protein) (H+-transporting ATP synthase chain9 - like protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; proton-transporting ATP synthase complex, coupling factor F(o) [GO:0045263]; thylakoid [GO:0009579]; hydrogen ion transmembrane transporter activity [GO:0015078]; hydrolase activity [GO:0016787]; protein domain specific binding [GO:0019904]; ATP synthesis coupled proton transport [GO:0015986]; defense response to bacterium [GO:0042742]; response to cytokinin [GO:0009735] locus:2116485; AT4G32260 atp synthase ATP synthase B chain, chloroplast, putative, expressed (H+-transporting ATP synthase chain 9-like protein) (Os03g0278900 protein) (cDNA clone:001-205-A08, full insert sequence) (cDNA clone:J013049M17, full insert sequence) Q84PA4 Q84PA4_ORYSJ Os03g0278900 LOC_Os03g17070 Os03g0278900 OSNPB_030278900 ENOG411E1JU BBX27 Q9C9F4,A0A1P8ASJ7 COLX_ARATH,A0A1P8ASJ7_ARATH Putative zinc finger protein At1g68190,B-box zinc finger family protein 40371,43769 Putative zinc finger protein At1g68190,B-box zinc finger family protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; zinc ion binding [GO:0008270] locus:2199262; AT1G68190 zinc finger NA NA NA NA NA NA NA ENOG411E1JM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os07g0258000 protein (cDNA clone:002-147-C06, full insert sequence),Os01g0776800 protein,Os01g0776800 protein (Fragment) Q7F103,Q0JIU6,A0A0N7KDU7 Q7F103_ORYSJ,Q0JIU6_ORYSJ,A0A0N7KDU7_ORYSJ OJ1057_E05.123 OJ1354_H07.103 Os07g0258000 OSNPB_070258000,Os01g0776800 Os01g0776800 OSNPB_010776800,Os01g0776800 OSNPB_010776800 ENOG411E1JH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207),Os03g0108300 protein Q10SX3,A0A0P0VS69 Q10SX3_ORYSJ,A0A0P0VS69_ORYSJ Os03g0108300 LOC_Os03g01800 Os03g0108300 OSNPB_030108300,Os03g0108300 OSNPB_030108300 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411E1JJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoenolpyruvate carboxylase Os01g0208700 protein (Putative phosphoenolpyruvate carboxylase 1) (cDNA clone:J013071A07, full insert sequence) Q5QNA5 Q5QNA5_ORYSJ Os01g0208700 Os01g0208700 OsJ_00832 OSJNBa0016I09.26 OSNPB_010208700 ENOG411E1JE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Os09g0463100 protein (Fragment) A0A0P0XMW3 A0A0P0XMW3_ORYSJ Os09g0463100 OSNPB_090463100 ENOG411E1JF KCS2 Q5XEP9 KCS2_ARATH 3-ketoacyl-CoA synthase 2 (KCS-2) (EC 2.3.1.199) (Docosanoic acid synthase) (Very long-chain fatty acid condensing enzyme 2) (VLCFA condensing enzyme 2) DISRUPTION PHENOTYPE: No visible phenotype in flowers or siliques, but reduced root growth. Suberin with a significant decrease in VLCFA derivatives longer than C20 (PubMed:18786002). No visible phenotype, but reduced root growth. Kcs2 and kcs20 double mutants have a glossy green appearance due to a significant reduction of the amount of epicuticular wax crystals on the stems and siliques, a significant reduction of C22 and C24 VLCFA derivatives in aliphatic suberin and a roots growth retardation and abnormal lamellation of the suberin layer in the endodermis (PubMed:19619160). {ECO:0000269|PubMed:18786002, ECO:0000269|PubMed:19619160}. no obvious phenotype.,significantly reduced root growth Short roots-L. Schreiber-2008 FUNCTION: Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26) (PubMed:15277688). Involved in the elongation of C20 fatty acid suberin precursors (PubMed:18786002). Functionally redundant with KCS20 in the two-carbon elongation of C22 fatty acids that is required for cuticular wax and root suberin biosynthesis (PubMed:19619160). {ECO:0000269|PubMed:15277688, ECO:0000269|PubMed:18786002, ECO:0000269|PubMed:19619160}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. 2.3.1.199 59528 3-ketoacyl-CoA synthase 2 (KCS-2) (EC 2.3.1.199) (Docosanoic acid synthase) (Very long-chain fatty acid condensing enzyme 2) (VLCFA condensing enzyme 2) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid elongase activity [GO:0009922]; fatty acid biosynthetic process [GO:0006633]; response to osmotic stress [GO:0006970]; response to wounding [GO:0009611]; suberin biosynthetic process [GO:0010345] TISSUE SPECIFICITY: Expressed in siliques, flowers and stems (PubMed:18465198). In young seedlings, expressed in the central cylinder of primary roots, in emerging lateral roots and in their root cap, but not in aboveground tissues such as hypocotyls, cotyledons and leaves. Expressed in sepals in mature flowers and in the chalaza and micropyle region of developing seeds shortly prior to or just after the detachment from the funiculus (PubMed:18786002). Expressed in roots, flowers, cauline leaves and siliques (PubMed:19619160). {ECO:0000269|PubMed:18465198, ECO:0000269|PubMed:18786002, ECO:0000269|PubMed:19619160}. locus:2020215; AT1G04220 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411E1JB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411E9EG Q9LXB9 Q9LXB9_ARATH At5g09540 (Chaperone DnaJ-domain superfamily protein) (Uncharacterized protein F17I14_270) 30981 At5g09540 (Chaperone DnaJ-domain superfamily protein) (Uncharacterized protein F17I14_270) cytosol [GO:0005829] locus:2144726; AT5G09540 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411DSQ8 UGT89B1,UGT89A2,UGT89C1 Q9C9B0,Q9LZD8,Q9LNE6,Q9SYC4 U89B1_ARATH,U89A2_ARATH,U89C1_ARATH,Q9SYC4_ARATH UDP-glycosyltransferase 89B1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT89B1) (EC 2.4.1.91) (Flavonol 7-O-glucosyltransferase UGT89B1),UDP-glycosyltransferase 89A2 (EC 2.4.1.-),UDP-glycosyltransferase 89C1 (EC 2.4.1.-) (Flavonol 7-O-rhamnosyltransferase) (UDP-rhamnose: flavonol 7-O-rhamnosyltransferase),F11M15.8 protein (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but plants do not accumulate 7-O-rhamnosylated flavonols. {ECO:0000269|PubMed:17314094}. FUNCTION: Possesses quercetin 3-O-glucosyltransferase, 7-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro. Also active in vitro on benzoates and benzoate derivatives. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15352060}.,FUNCTION: Glucosyltransferase that glucosylates benzoates and benzoate derivatives in vitro. {ECO:0000269|PubMed:11641410}.,FUNCTION: Flavonol 7-O-rhamnosyltransferase that acts on kaempferol 3-O-glucoside and other 3-O-glycosylated flavonols like quercetin 3-O-glucoside, quercetin 3-O-galactoside and isorhamnetin 3-O-glucoside. Shows a strict specificity for UDP-rhamnose as donor and does not act on flavonol aglycones or 3-O-glycosylated anthocyanins. {ECO:0000269|PubMed:17314094}. ARA:AT5G03490-MONOMER;,MetaCyc:MONOMER-17875;,ARA:AT1G51210-MONOMER; 2.4.1.-; 2.4.1.91,2.4.1.- 52106,50942,48122,47384 UDP-glycosyltransferase 89B1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT89B1) (EC 2.4.1.91) (Flavonol 7-O-glucosyltransferase UGT89B1),UDP-glycosyltransferase 89A2 (EC 2.4.1.-),UDP-glycosyltransferase 89C1 (EC 2.4.1.-) (Flavonol 7-O-rhamnosyltransferase) (UDP-rhamnose: flavonol 7-O-rhamnosyltransferase),F11M15.8 protein (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; UDP-glycosyltransferase activity [GO:0008194]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glycosyltransferase activity [GO:0008194]; flavonol biosynthetic process [GO:0051555],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Highly expressed in floral buds. Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:17314094}. locus:2031566;,locus:2142654;,locus:2198791;,locus:2008266; AT1G73880,AT5G03490,AT1G06000,AT1G51210 UDP-Glycosyltransferase Os06g0282000 protein (Putative UDP-glycosyltransferase) (cDNA, clone: J100090N09, full insert sequence),Os06g0282400 protein Q5VN44,A0A0P0WV91 Q5VN44_ORYSJ,A0A0P0WV91_ORYSJ Os06g0282000 Os06g0282000 OsJ_20980 OSJNBa0063H02.24 OSNPB_060282000,Os06g0282400 OSNPB_060282400 ENOG411DSQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0542400 protein Q6ESZ1 Q6ESZ1_ORYSJ Os02g0542400 Os02g0542400 OsJ_07059 OSNPB_020542400 P0472F10.15 ENOG411DSQ4 B6IDH4,A0A1P8BAC3,A0A1P8BAB1,F4K6U4 B6IDH4_ARATH,A0A1P8BAC3_ARATH,A0A1P8BAB1_ARATH,F4K6U4_ARATH At5g14550 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 44552,44167,40930,40618 At5g14550 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein membrane [GO:0016020]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757],membrane [GO:0016020]; acetylglucosaminyltransferase activity [GO:0008375],integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375] locus:2222637; AT5G14550 Core-2/I-Branching enzyme BC10 protein (Os05g0170000 protein) (cDNA clone:J023045H21, full insert sequence) (cDNA clone:J033128G01, full insert sequence) Q65XS5 Q65XS5_ORYSJ BC10 Os05g0170000 OsJ_17281 OSNPB_050170000 P0685E10.4 ENOG411DSQ5 CASP5 Q9LXF3 CASP5_ARATH Casparian strip membrane protein 5 (AtCASP5) FUNCTION: Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion. {ECO:0000269|PubMed:21593871}. 20583 Casparian strip membrane protein 5 (AtCASP5) Casparian strip [GO:0048226]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536]; protein homodimerization activity [GO:0042803]; cell wall modification [GO:0042545]; cell-cell junction assembly [GO:0007043] locus:2150986; AT5G15290 cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion Casparian strip membrane protein 3 (OsCASP3) Q67X40 CASP3_ORYSJ Os06g0231050 LOC_Os06g12500 OsJ_019849 P0525F01.34 FUNCTION: Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). {ECO:0000250}. ENOG411DSQ6 Q8RWQ5 FBT4_ARATH Probable folate-biopterin transporter 4 FUNCTION: Could mediate folate transport. {ECO:0000250}. 53883 Probable folate-biopterin transporter 4 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2160150; AT5G54860 BT1 family Os01g0243200 protein (cDNA clone:J033122L17, full insert sequence),Os01g0243200 protein Q0JP52,A0A0P0V0M5 Q0JP52_ORYSJ,A0A0P0V0M5_ORYSJ Os01g0243200 Os01g0243200 OSNPB_010243200,Os01g0243200 OSNPB_010243200 ENOG411DSQ7 GLY1 Q949Q0,A0A1P8B101 GPDA2_ARATH,A0A1P8B101_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic (EC 1.1.1.8) (Protein SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1),Glycerol-3-phosphate dehydrogenase [NAD(+)] (EC 1.1.1.8) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but leaves have decreased levels of hexadecatrienoic fatty acid (16:3) and increased levels of oleic acid (18:1). {ECO:0000269|PubMed:14729910, ECO:0000269|PubMed:15044700}. FUNCTION: Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids. Required for activation of systemic acquired resistance (SAR). Provision of glycerol-3-phosphate may be involved in generating lipid signals necessary for mediating defense responses and SAR. {ECO:0000269|PubMed:14729910, ECO:0000269|PubMed:15044700, ECO:0000269|PubMed:17431038, ECO:0000269|PubMed:18088304, ECO:0000269|PubMed:22645576}. PATHWAY: Membrane lipid metabolism; glycerophospholipid metabolism. 1.1.1.8 45092,34061 Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic (EC 1.1.1.8) (Protein SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1),Glycerol-3-phosphate dehydrogenase [NAD(+)] (EC 1.1.1.8) chloroplast envelope [GO:0009941]; glycerol-3-phosphate dehydrogenase complex [GO:0009331]; glycerol-3-phosphate dehydrogenase [NAD+] activity [GO:0004367]; NAD binding [GO:0051287]; carbohydrate metabolic process [GO:0005975]; glycerol-3-phosphate catabolic process [GO:0046168]; glycerolipid biosynthetic process [GO:0045017]; glycerolipid metabolic process [GO:0046486]; glycerophospholipid metabolic process [GO:0006650]; phospholipid biosynthetic process [GO:0008654]; systemic acquired resistance [GO:0009627],glycerol-3-phosphate dehydrogenase complex [GO:0009331]; glycerol-3-phosphate dehydrogenase [NAD+] activity [GO:0004367]; NAD binding [GO:0051287]; carbohydrate metabolic process [GO:0005975]; glycerol-3-phosphate catabolic process [GO:0046168] locus:2064849; AT2G40690 Glycerol-3-phosphate dehydrogenase Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic (EC 1.1.1.8),Os07g0229800 protein Q8H2J9,A0A0P0X429 GPDA_ORYSJ,A0A0P0X429_ORYSJ Os07g0229800 LOC_Os07g12640 OSJNBa0016A21.127,Os07g0229800 OSNPB_070229800 FUNCTION: Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids. {ECO:0000250}. ENOG411DSQ0 DHFS F4JYE9 DHFS_ARATH Dihydrofolate synthetase (AtDFA) (EC 6.3.2.12) (Protein GLOBULAR ARREST 1) DISRUPTION PHENOTYPE: Defective embryos with development arrested after the globular stage, at the transition to the heart stage. {ECO:0000269|PubMed:12535338}. Embryo defective; Preglobular / Globular-Y. Machida-2003 FUNCTION: Conversion of folates to polyglutamate derivatives, including tetrahydrofolate (PubMed:11752472, PubMed:12535338). Required during embryogenesis; from maternal tissues until the globular stage, and from the embryo after the globular stage (PubMed:12535338). {ECO:0000269|PubMed:11752472, ECO:0000269|PubMed:12535338}. PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 7,8-dihydrofolate from folate: step 1/1. {ECO:0000269|PubMed:11752472, ECO:0000269|PubMed:12535338}. 6.3.2.12; 6.3.2.12 56904 Dihydrofolate synthetase (AtDFA) (EC 6.3.2.12) (Protein GLOBULAR ARREST 1) mitochondrial matrix [GO:0005759]; ATP binding [GO:0005524]; dihydrofolate synthase activity [GO:0008841]; metal ion binding [GO:0046872]; embryo development ending in seed dormancy [GO:0009793]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate biosynthetic process [GO:0046654] DEVELOPMENTAL STAGE: Observed, in embryos from the early stage to the mature stage, with higher levels in embryo proper, and weaker signals in suspensor cells and other tissues surrounding the embryo. {ECO:0000269|PubMed:12535338}. TISSUE SPECIFICITY: Expressed in seedlings, leaves, inflorescence stems, flower buds and roots. {ECO:0000269|PubMed:12535338}. locus:2177916; AT5G41480 Folylpolyglutamate Os12g0623800 protein (Fragment) A0A0P0YDA7 A0A0P0YDA7_ORYSJ Os12g0623800 OSNPB_120623800 ENOG411DSQ1 CCD7 Q7XJM2,A0A1P8B107,A0A1P8B119 CCD7_ARATH,A0A1P8B107_ARATH,A0A1P8B119_ARATH Carotenoid cleavage dioxygenase 7, chloroplastic (AtCCD7) (AtNCED7) (Beta,beta-carotene 9',10'-oxygenase) (EC 1.13.11.68) (Protein MORE AXILLARY BRANCHING 3) (Protein MORE AXILLARY GROWTH 3),Carotenoid cleavage dioxygenase 7 DISRUPTION PHENOTYPE: Increased shoot branching. {ECO:0000269|PubMed:15342640, ECO:0000269|PubMed:23204501}. Slight increase in inflorescence number compared with wild type.,80% of wild type height at maturity. Leaves and petioles are shorter than wild type.,Bushy appearance due to an increase in primary and secondary order branching.,Endogenous levels of IAA and ABA are slightly higher than in wild type but differences were not significant.,Double mutants were indistinguishable from bps1 single mutants.,Double mutant is phenotypically indistinguishable from either single mutant. Increased branching; Semi-dwarf; Short leaves and petioles-O. Leyser-2004 FUNCTION: Involved in strigolactones biosynthesis by cleaving asymmetrically a variety of linear and cyclic carotenoids at the 9-10 double bond. Produces one C(13) beta-ionone and the C(27) 10'-apo-beta-carotenal. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds. No activity on lycopene, lutein, zeaxanthin, violaxanthin or neoxanthin. Probably not involved in abscisic acid biosynthesis. {ECO:0000269|PubMed:15268852, ECO:0000269|PubMed:16507088}. MISCELLANEOUS: The branching phenotypes of the max1, ccd7/max3 and ccd8/max4 mutants can be rescued by exogenous treatment with the synthetic strigolactone analogs GR24 and 4BD. {ECO:0000305|PubMed:23204501}. ARA:AT2G44990-MONOMER;MetaCyc:AT2G44990-MONOMER; 1.13.11.68;1.13.11.71; 1.13.11.68 69453,69926,71324 Carotenoid cleavage dioxygenase 7, chloroplastic (AtCCD7) (AtNCED7) (Beta,beta-carotene 9',10'-oxygenase) (EC 1.13.11.68) (Protein MORE AXILLARY BRANCHING 3) (Protein MORE AXILLARY GROWTH 3),Carotenoid cleavage dioxygenase 7 chloroplast [GO:0009507]; 9-cis-beta-carotene 9',10'-cleavage oxygenase activity [GO:0102395]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702]; carotene catabolic process [GO:0016121]; secondary shoot formation [GO:0010223]; strigolactone biosynthetic process [GO:1901601],metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702],metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702]; carotene catabolic process [GO:0016121]; response to auxin [GO:0009733]; secondary shoot formation [GO:0010223]; strigolactone biosynthetic process [GO:1901601] TISSUE SPECIFICITY: Expressed in flowers, siliques, inflorescence stems, petiole, leaves and roots. {ECO:0000269|PubMed:15268852, ECO:0000269|PubMed:16507088, ECO:0000269|PubMed:21243360}. AT2G44990 carotenoid cleavage dioxygenase 7 Carotenoid cleavage dioxygenase 7, chloroplastic (OsCCD7) (Beta,beta-carotene 9',10'-oxygenase) (EC 1.13.11.68) (Protein DWARF-17) (Protein HIGH-TILLERING DWARF 1) (Protein MAX3 homolog) Q7XU29 CCD7_ORYSJ CCD7 D17 HTD1 Os04g0550600 LOC_Os04g46470 OsJ_15694 OSJNBb0034G17.9 DISRUPTION PHENOTYPE: Dwarf phenotype with increased branching and tiller number, and strong reduction of the root levels of strigolactones. {ECO:0000269|PubMed:15659436, ECO:0000269|PubMed:17092317, ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:18690207, ECO:0000269|PubMed:23204501}. FUNCTION: Involved in strigolactones biosynthesis by cleaving asymmetrically a variety of linear and cyclic carotenoids at the 9-10 double bond. Produces one C(13) beta-ionone and the C(27) 10'-apo-beta-carotenal. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds. Can rescue the phenotype in the Arabidopsis max3 mutant. {ECO:0000269|PubMed:17092317}. MISCELLANEOUS: The branching phenotypes of the ccd7/max3 and ccd8b/max4 mutants can be rescued by exogenous treatment with the synthetic strigolactone analogs GR24 and 4BD. {ECO:0000305|PubMed:23204501}. ENOG411DSQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA kinase family Os02g0559300 protein (Putative CRK1 protein) (cDNA clone:J023088A16, full insert sequence),Os02g0559300 protein (Putative CRK1 protein),Os08g0112500 protein (Putative CRK1 protein),Os08g0112500 protein (Fragment),Os04g0693100 protein (Fragment) Q6YU34,Q6YU33,Q6ZCC7,A0A0P0XBA3,A0A0N7KJZ7 Q6YU34_ORYSJ,Q6YU33_ORYSJ,Q6ZCC7_ORYSJ,A0A0P0XBA3_ORYSJ,A0A0N7KJZ7_ORYSJ P0435E12.11-2 Os02g0559300 OsJ_07025 OSNPB_020559300,P0435E12.11-1 Os02g0559300 OSNPB_020559300,Os08g0112500 OsJ_25796 OSNPB_080112500 P0498H04.21,Os08g0112500 OSNPB_080112500,Os04g0693100 OSNPB_040693100 ENOG411DSQ3 BLI Q9LIQ9 BLI_ARATH Protein BLISTER (Protein KOLD SENSITIV-1) DISRUPTION PHENOTYPE: Pleiotropic phenotype with defects in cotyledon, leaf, flower and seed development, slow growth, severe epidermal defects, including loss of cell adhesion, outgrowth of cells and increased cotyledon cell size. {ECO:0000269|PubMed:20647345}. Male gametophyte defective; Homozygotes are viable: Delayed germination; Dwarf; Slow growth; Small leaves and cotyledons with blister-like outgrowths; Abnormal flower morphology-D. Schubert-2010 FUNCTION: Is required for normal leaf, flower and seed development and controls cotyledon and leaf patterning by inhibiting premature differentiation. Regulates the expression of a subset of PcG target genes. Is required for the repression of the floral specific genes PI, SEP2, and SEP3, but also for the activation of FLC (PubMed:20647345). Involved in response to cold. Involved in the regulation of COR15A, COR15B, BAM3 and AMY3 transcripts, and ascorbate levels in response to prolonged chilling temperatures (PubMed:20674078). {ECO:0000269|PubMed:20647345, ECO:0000269|PubMed:20674078}. 78384 Protein BLISTER (Protein KOLD SENSITIV-1) cytosol [GO:0005829]; nucleus [GO:0005634]; cotyledon morphogenesis [GO:0048826]; flower development [GO:0009908]; leaf morphogenesis [GO:0009965]; positive regulation of cell division [GO:0051781]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; seed development [GO:0048316]; trichome branching [GO:0010091] DEVELOPMENTAL STAGE: During embryo development, expressed in the basal part and the vasculature of heart stage and torpedo stage embryos. {ECO:0000269|PubMed:20647345}. TISSUE SPECIFICITY: Expressed in root tips, emerging lateral roots, shoot apical meristem (SAM), vasculature of cotyledons, leaves, sepals and carpels. {ECO:0000269|PubMed:20647345}. locus:2076071; AT3G23980 NA Heavy meromyosin-like (Os01g0911800 protein) Q8S0A4 Q8S0A4_ORYSJ Os01g0911800 Os01g0911800 OsJ_04505 OSNPB_010911800 P0470A12.17 ENOG411DSQX OXA1,OXA1L Q42191,Q9SKD3 OXA1_ARATH,OXA1L_ARATH Mitochondrial inner membrane protein OXA1 (Oxidase assembly 1 protein) (AtOXA1),Mitochondrial inner membrane protein OXA1-like FUNCTION: Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for activity and assembly of cytochrome c oxidase. {ECO:0000269|PubMed:9450344}.,FUNCTION: Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. May participate in the activity and assembly of cytochrome oxidase (By similarity). {ECO:0000250}. 47860,47897 Mitochondrial inner membrane protein OXA1 (Oxidase assembly 1 protein) (AtOXA1),Mitochondrial inner membrane protein OXA1-like integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; protein insertion into membrane [GO:0051205],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; protein insertion into membrane [GO:0051205] TISSUE SPECIFICITY: Expressed in stem, leaf and flower. {ECO:0000269|PubMed:9450344}. locus:2174068;,locus:2039134; AT5G62050,AT2G46470 mitochondrial inner membrane protein OXA1-like Inner membrane protein OXA1-like, mitochondrial, putative, expressed (Os10g0521300 protein) (Putative cytochrome oxidase assembly protein),Os03g0116000 protein Q8LNI1,A0A0P0VS81 Q8LNI1_ORYSJ,A0A0P0VS81_ORYSJ Os10g0521300 LOC_Os10g37690 OSJNBb0028C01.30 OSNPB_100521300,Os03g0116000 OSNPB_030116000 ENOG411DSQY MPO12.110 Q9FND8,A0A1P8BH16 PP409_ARATH,A0A1P8BH16_ARATH Pentatricopeptide repeat-containing protein At5g40400,Pentatricopeptide repeat (PPR) superfamily protein 70188,78105 Pentatricopeptide repeat-containing protein At5g40400,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2170538; AT5G40400 Pentatricopeptide repeat-containing protein Os01g0546700 protein A2ZU74 A2ZU74_ORYSJ Os01g0546700 OsJ_02159 OSNPB_010546700 ENOG411DSQZ CYB561C Q67ZF6 ACFR3_ARATH Probable transmembrane ascorbate ferrireductase 3 (EC 1.16.5.1) (Artb561-3) (Protein b561A.tha14) FUNCTION: Two-heme-containing cytochrome. May catalyze ascorbate-dependent trans-membrane ferric-chelate reduction (By similarity). {ECO:0000250}. R-ATH-917937; 1.16.5.1 24781 Probable transmembrane ascorbate ferrireductase 3 (EC 1.16.5.1) (Artb561-3) (Protein b561A.tha14) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; oxidation-reduction process [GO:0055114] locus:2006752; AT1G14730 transmembrane ascorbate ferrireductase 3-like Cytochrome b561 family protein, expressed (Os03g0717200 protein) Q10DW5 Q10DW5_ORYSJ Os03g0717200 LOC_Os03g50820 Os03g0717200 OSNPB_030717200 ENOG411DSQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Os10g0536600 protein,Os09g0307916 protein A0A0N7KS49,A0A0P0XLP2 A0A0N7KS49_ORYSJ,A0A0P0XLP2_ORYSJ Os10g0536600 OSNPB_100536600,Os09g0307916 OSNPB_090307916 ENOG411DSQU LPEAT1 Q8L7R3,A0A1P8AQH0 LPCT1_ARATH,A0A1P8AQH0_ARATH Lysophospholipid acyltransferase LPEAT1 (EC 2.3.1.25) (Lysophosphatidylethanolamine acyltransferase 1) (AtLPEAT1),Phospholipid/glycerol acyltransferase family protein FUNCTION: Displays acyl-CoA-dependent lysophospholipid acyltransferase activity with a subset of lysophospholipids as substrates. Exhibits strong acylation activity of lysophosphatidylethanolamine (LPE) and lysophosphatidate (LPA), with lower activity on lysophosphatidylcholine (LPC) and lysophosphatidylserine (LPS). Has a preference for 18:1-LPE over 16:0-LPE as acceptor and palmitoyl-CoA (16:0-CoA) as acyl donor. Activity is calcium-independent. {ECO:0000269|PubMed:19445718}. PATHWAY: Lipid metabolism; phospholipid metabolism. ARA:AT1G80950-MONOMER; R-ATH-1482788;R-ATH-1482801;R-ATH-1482839;R-ATH-1482925;R-ATH-1483166;R-ATH-6798695; 2.3.1.25 44713,43678 Lysophospholipid acyltransferase LPEAT1 (EC 2.3.1.25) (Lysophosphatidylethanolamine acyltransferase 1) (AtLPEAT1),Phospholipid/glycerol acyltransferase family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasmalogen synthase activity [GO:0050200]; phospholipid biosynthetic process [GO:0008654]; phospholipid metabolic process [GO:0006644],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746]; metabolic process [GO:0008152] locus:2025807; AT1G80950 Acyltransferase Os05g0357800 protein,Os01g0307562 protein Q5W795,A0A0P0V1G7 Q5W795_ORYSJ,A0A0P0V1G7_ORYSJ Os05g0357800 Os05g0357800 OJ1045_C06.8 OSNPB_050357800,Os01g0307562 OSNPB_010307562 ENOG411DSQV Q9LZR4,Q9LZE2 Q9LZR4_ARATH,Q9LZE2_ARATH E3 ubiquitin-protein ligase (Emb|CAB82940.1) (Uncharacterized protein F17C15_170),At5g03450 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein F12E4_210) 19158,69869 E3 ubiquitin-protein ligase (Emb|CAB82940.1) (Uncharacterized protein F17C15_170),At5g03450 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein F12E4_210) ligase activity [GO:0016874] locus:2144633;,locus:2142694; AT5G03750,AT5G03450 zinc finger Os03g0108200 protein,Os10g0545600 protein A0A0P0VS22,A0A0P0XWT1 A0A0P0VS22_ORYSJ,A0A0P0XWT1_ORYSJ Os03g0108200 OSNPB_030108200,Os10g0545600 OSNPB_100545600 ENOG411DSQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0172300 protein (cDNA clone:001-207-E01, full insert sequence) Q942R8 Q942R8_ORYSJ Os01g0172300 OsJ_00558 OSNPB_010172300 P0583G08.31 ENOG411DSQP TET3,TET4 Q9M1E7,Q9LSS4,A0A1I9LNY5 TET3_ARATH,TET4_ARATH,A0A1I9LNY5_ARATH Tetraspanin-3,Tetraspanin-4,Tetraspanin3 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 31888,37178,22850 Tetraspanin-3,Tetraspanin-4,Tetraspanin3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506],integral component of membrane [GO:0016021] locus:2085692;,locus:2144050; AT3G45600,AT5G60220 Tetraspanin family Expressed protein (Os03g0853200 protein) (Tetraspanin family protein, expressed) (cDNA clone:002-155-D07, full insert sequence),Os05g0122800 protein,Os05g0122800 protein (Fragment),Os03g0853000 protein,Os12g0249100 protein Q84T76,Q75L87,Q0DL52,A0A0P0WHC7,A0A0N7KIE7,A0A0N7KTT8 Q84T76_ORYSJ,Q75L87_ORYSJ,Q0DL52_ORYSJ,A0A0P0WHC7_ORYSJ,A0A0N7KIE7_ORYSJ,A0A0N7KTT8_ORYSJ Os03g0853200 LOC_Os03g63620 Os03g0853200 Os03g63620 OSNPB_030853200,Os05g0122800 OJ1729_E02.7 OsJ_16943 OSNPB_050122800,Os05g0122800 Os05g0122800 OSNPB_050122800,Os05g0122800 OSNPB_050122800,Os03g0853000 OSNPB_030853000,Os12g0249100 OSNPB_120249100 ENOG411DSQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os07g0163900 protein A0A0P0X2V9 A0A0P0X2V9_ORYSJ Os07g0163900 OSNPB_070163900 ENOG411DSQR CESA3,CESA7 Q941L0,Q9SWW6 CESA3_ARATH,CESA7_ARATH Cellulose synthase A catalytic subunit 3 [UDP-forming] (AtCesA3) (EC 2.4.1.12) (Constitutive expression of VSP1 protein 1) (Isoxaben-resistant protein 1) (Ath-B) (Protein ECTOPIC LIGNIN 1) (Protein RADIALLY SWOLLEN 5) (AtRSW5),Cellulose synthase A catalytic subunit 7 [UDP-forming] (AtCesA7) (EC 2.4.1.12) (Protein FRAGILE FIBER 5) (Protein IRREGULAR XYLEM 3) (AtIRX3) DISRUPTION PHENOTYPE: Mutants cev1 are dark green and contains more jasmonates and ethylene, that leads to shorter and thickened hypocotyls and roots, with prolific root hairs, and the accumulation of purple anthocyanins. They exhibit constitutive and high expression in leaves lamina of vegetative storage proteins (VSP1 and VSP2), basic chitinase CHI-B and plant defensin PDF1.2. In addition, this mutation confers resistance to powdery mildew pathogens such as E.cichoracearum, E.orontii and O.lycopersicum, to the bacterial pathogen P.syringae pv maculicola, and also to the green peach aphid M.persicae. {ECO:0000269|PubMed:11340179}.,DISRUPTION PHENOTYPE: Reduced plant size, reduced content of cellulose, collapsed xylem vessels and wilting of inflorescence stems (PubMed:9165747). Enhanced resistance to the pathogens Ralstonia solanacearum and Plectosphaerella cucumerina (PubMed:17351116). {ECO:0000269|PubMed:17351116, ECO:0000269|PubMed:9165747}. high level of resistance to the herbicide N-(3-[1-ethyl-1-methylpropyl]-5-isoxazolyl)-26dimethoxybenzamide (isoxaben); resistance is ca. 300 and 3 times that of the wild type for homozygotes and the heterozygotes respectively; resistance also expressed in tissue culture.,high level of resistance to the herbicide N-(3-[1-ethyl-1-methylpropyl]-5-isoxazolyl)-26dimethoxybenzamide (isoxaben); resistance is ca. 90 and 6 times that of the wild type for the homozygotes and the heterozygotes respectively; resistance also expressed in tissue culture.,Gametophytic lethal. 50% pollen grains from the heterozygous plants are significantly deformed without pollen tube formation.,Nine-day-old wild-type seedlings grown for 16 h perday on plates incorporated approximately 20% of the 14C-glucose into cellulose in the assay conditions used. This was reduced by half in the mutant.,exhibited a decrease in total extractives and a concomitant increase in total lignins relative to wild-type plants more H units and less S units relative to wild-type lignins in the eli1 mutant arabinose was more abundant in the insoluble residue from eli1 stems,The pom1/eli1 double mutant was compromised in growth and the rate of development was slow relative to the single mutants. The pom1/eli1 double mutants had very small rosettes and their leaves accumulated anthocyanins.,Partial reversion of the hypocotyl-elongation defect of eli1-1.,Similar phenotype to that observed in the mur10 mutants. Null: Complete male gametophyte defective; Knockdown: Short roots; Elevated jasmonate and ethylene levels-C. Somerville-2007,Collapsed xylem; Cellulose-deficient secondary walls-S. Turner-1999 FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots. {ECO:0000269|PubMed:11340179, ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12119374, ECO:0000269|PubMed:12713541, ECO:0000269|PubMed:17878302, ECO:0000269|PubMed:17878303}.,FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the secondary cell wall formation. Required for the xylem cell wall thickening. {ECO:0000269|PubMed:11148295, ECO:0000269|PubMed:12165296, ECO:0000269|PubMed:12805608, ECO:0000269|PubMed:17351116, ECO:0000269|PubMed:9165747}. PATHWAY: Glycan metabolism; plant cellulose biosynthesis. MetaCyc:MONOMER-2362;,MetaCyc:MONOMER-2365; 2.4.1.12; 2.4.1.12 119683,115798 Cellulose synthase A catalytic subunit 3 [UDP-forming] (AtCesA3) (EC 2.4.1.12) (Constitutive expression of VSP1 protein 1) (Isoxaben-resistant protein 1) (Ath-B) (Protein ECTOPIC LIGNIN 1) (Protein RADIALLY SWOLLEN 5) (AtRSW5),Cellulose synthase A catalytic subunit 7 [UDP-forming] (AtCesA7) (EC 2.4.1.12) (Protein FRAGILE FIBER 5) (Protein IRREGULAR XYLEM 3) (AtIRX3) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; cellulose synthase (UDP-forming) activity [GO:0016760]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; defense response [GO:0006952]; plant-type primary cell wall biogenesis [GO:0009833]; plant-type secondary cell wall biogenesis [GO:0009834],cellulose synthase complex [GO:0010330]; chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; metal ion binding [GO:0046872]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall biogenesis [GO:0009832]; plant-type primary cell wall biogenesis [GO:0009833]; plant-type secondary cell wall biogenesis [GO:0009834]; rhamnogalacturonan I side chain metabolic process [GO:0010400] DEVELOPMENTAL STAGE: Mostly expressed in cotyledons during all steps of embryogenesis, and decrease toward the bent-cotyledon stage. {ECO:0000269|PubMed:12481071}.,DEVELOPMENTAL STAGE: Not found in embryos. Increasing amount as stems mature. {ECO:0000269|PubMed:10330464, ECO:0000269|PubMed:11148295}. TISSUE SPECIFICITY: Expressed in young plants, flowers and roots, and to a lower extent in leaves and stems. Localized in all cells except meristematic cells. Accumulates particularly in root caps, root hairs, epidermal layer, midveins of leaves and anthers. Not present in old tissues. {ECO:0000269|PubMed:11517344, ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12119374, ECO:0000269|PubMed:12481071}.,TISSUE SPECIFICITY: Confined to secondary cell wall developing tissues such as xylems and interfascicular regions. Expressed in young plants, stems and flowers, but not in leaves, roots and shoots. {ECO:0000269|PubMed:10330464, ECO:0000269|PubMed:11148295, ECO:0000269|PubMed:11517344, ECO:0000269|PubMed:12481071, ECO:0000269|PubMed:12538856}. locus:2156789;,locus:2178935; AT5G05170,AT5G17420 cellulose synthase Cellulose synthase A catalytic subunit 9 [UDP-forming] (EC 2.4.1.12) (OsCesA9),Probable cellulose synthase A catalytic subunit 2 [UDP-forming] (EC 2.4.1.12) (OsCesA2),Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.12) (OsCesA8),Os03g0808100 protein (Fragment),Os07g0208500 protein Q69P51,Q84M43,Q84ZN6,A0A0P0W4Q2,A0A0N7KI92,A0A0P0X3V1 CESA9_ORYSJ,CESA2_ORYSJ,CESA8_ORYSJ,A0A0P0W4Q2_ORYSJ,A0A0N7KI92_ORYSJ,A0A0P0X3V1_ORYSJ CESA9 Os09g0422500 LOC_Os09g25490 OJ1740_D06.31 OsJ_028258 P0418B08.2,CESA2 Os03g0808100 LOC_Os03g59340 OsJ_012480 OSJNBa0059E14.5 OSJNBa0060M17.2,CESA8 Os07g0208500 LOC_Os07g10770 OJ1136_A05.10 OJ1559_F09.120 OsJ_022567,Os03g0808100 OSNPB_030808100,Os07g0208500 OSNPB_070208500 DISRUPTION PHENOTYPE: Plants develop a brittle culm (bc) phenotype with a reduction of up to 90% percent of cellulose content in culm. {ECO:0000269|PubMed:12970476}. FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity). Involved in the secondary cell wall formation. {ECO:0000250, ECO:0000269|PubMed:12970476}.,FUNCTION: Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250}. ENOG411DSQS F4J0P2,A0A1I9LNN0 F4J0P2_ARATH,A0A1I9LNN0_ARATH Transducin/WD40 repeat-like superfamily protein 176306,174993 Transducin/WD40 repeat-like superfamily protein autophagosome membrane [GO:0000421]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; autophagosome assembly [GO:0000045] locus:2098765; AT3G50590 WD40 Os09g0407950 protein,Os09g0408000 protein (Fragment) A0A0P0XMB6,A0A0P0XM03 A0A0P0XMB6_ORYSJ,A0A0P0XM03_ORYSJ Os09g0407950 OSNPB_090407950,Os09g0408000 OSNPB_090408000 ENOG411DSQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription initiation factor IIF NA NA NA NA NA NA NA ENOG411DSQN PCMP-E96 Q9LJR6 PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial 67057 Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2086964; AT3G25060 PPR repeat Os10g0540100 protein (PPR986-12, putative, expressed) (cDNA clone:J033073G21, full insert sequence) Q336W7 Q336W7_ORYSJ Os10g0540100 LOC_Os10g39460 Os10g0540100 OsJ_32311 OSNPB_100540100 ENOG411DSQH AUG7 Q0WTP1 AUG7_ARATH AUGMIN subunit 7 FUNCTION: Contributes to the assembly of the acentrosomal spindle and phragmoplast microtubule arrays as part of the augmin complex. Regulates the association of gamma-tubulin with the spindle and phragmoplast microtubules. {ECO:0000269|PubMed:22505726}. 37009 AUGMIN subunit 7 phragmoplast [GO:0009524]; spindle microtubule [GO:0005876]; microtubule minus-end binding [GO:0051011]; cell cycle [GO:0007049]; cell division [GO:0051301] locus:2151371; AT5G17620 nuclear matrix protein 1 Os01g0869500 protein (Putative nuclear matrix protein 1) (cDNA clone:002-114-G03, full insert sequence) (cDNA clone:J023054D19, full insert sequence) Q5N945 Q5N945_ORYSJ Os01g0869500 OsJ_04222 OSNPB_010869500 P0039A07.2 P0677H08.34 ENOG411DSQI A0A1P8BBQ5,F4K6K5 A0A1P8BBQ5_ARATH,F4K6K5_ARATH Leucine-rich repeat protein kinase family protein 64833,61908 Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2182915; AT5G07150 LRR receptor-like serine threonine-protein kinase Os05g0471000 protein (cDNA clone:J013124N15, full insert sequence) Q6ATX3 Q6ATX3_ORYSJ Os05g0471000 OSJNBa0052E20.8 OSNPB_050471000 P0015C02.3 ENOG411DSQJ F4JS27 F4JS27_ARATH Chaperone DnaJ-domain superfamily protein 60481 Chaperone DnaJ-domain superfamily protein locus:2126367; AT4G37480 DnaJ domain DnaJ domain containing protein, expressed (Os03g0761700 protein) (Putative heat shock protein) (cDNA clone:J013149B16, full insert sequence),Os03g0761700 protein (Fragment) Q94H94,A0A0P0W3S0 Q94H94_ORYSJ,A0A0P0W3S0_ORYSJ Os03g0761700 LOC_Os03g55360 Os03g0761700 OsJ_12680 OSJNBb0048A17.22 OSNPB_030761700,Os03g0761700 OSNPB_030761700 ENOG411DSQK emb2191 A0A1P8AR49,Q6IDB6 A0A1P8AR49_ARATH,Q6IDB6_ARATH Cytidine/deoxycytidylate deaminase family protein,At1g48175 (Cytidine/deoxycytidylate deaminase family protein) Embryo defective; Preglobular-D. Meinke-2003 FUNCTION: Involved in RNA editing. Catalyzes the specific deamination of adenosine-34 in several cytosolic tRNA species. Generates inosine at the wobble position of the anticodon loop. {ECO:0000269|PubMed:25315605}. 18734,20107 Cytidine/deoxycytidylate deaminase family protein,At1g48175 (Cytidine/deoxycytidylate deaminase family protein) hydrolase activity [GO:0016787]; zinc ion binding [GO:0008270],hydrolase activity [GO:0016787]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:505006173; AT1G48175 TRNA-specific adenosine deaminase Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed (Os03g0321900 protein),Os03g0321900 protein (Fragment) Q10M63,A0A0P0VXP8 Q10M63_ORYSJ,A0A0P0VXP8_ORYSJ Os03g0321900 LOC_Os03g20570 Os03g0321900 OSNPB_030321900,Os03g0321900 OSNPB_030321900 ENOG411DSQD Q9ZNQ5 Q9ZNQ5_ARATH NHL domain-containing protein (Uncharacterized protein At2g01410) 43022 NHL domain-containing protein (Uncharacterized protein At2g01410) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774] locus:2038751; AT2G01410 NA Os01g0606133 protein A0A0P0V505 A0A0P0V505_ORYSJ Os01g0606133 OSNPB_010606133 ENOG411DSQE atENP1 Q8RWS4 Q8RWS4_ARATH Bystin-like protein (Putative bystin) 51473 Bystin-like protein (Putative bystin) embryo sac development [GO:0009553]; pollen development [GO:0009555]; rRNA processing [GO:0006364] locus:2028686; AT1G31660 K14797 essential nuclear protein 1 Bystin (51.6 kD)-like (Os09g0352400 protein),Os09g0352400 protein (Fragment) Q6EQN5,A0A0P0XKJ8 Q6EQN5_ORYSJ,A0A0P0XKJ8_ORYSJ Os09g0352400 OSJNBa0004P20.32-1 OSJNBa0042H24.8-1 OSNPB_090352400,Os09g0352400 OSNPB_090352400 ENOG411DSQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Leucine-rich repeat receptor protein kinase MSP1 (EC 2.7.11.1) (Protein MULTIPLE SPOROCYTE 1),Leucine-rich repeat receptor protein kinase MSL1 (EC 2.7.11.1) (MSP1 protein homolog 1) (MSP1-like protein 1),Os01g0917500 protein (Fragment),Os02g0194400 protein Q8RZV7,Q7F8Q9,A0A0P0VBZ8,A0A0P0VFW0 MSP1_ORYSJ,MSL1_ORYSJ,A0A0P0VBZ8_ORYSJ,A0A0P0VFW0_ORYSJ MSP1 Os01g0917500 LOC_Os01g68870 P0413C03.22,MSL1 Os02g0194400 LOC_Os02g10100 OsJ_05738 P0437H03.136,Os01g0917500 OSNPB_010917500,Os02g0194400 OSNPB_020194400 DISRUPTION PHENOTYPE: Male-sterile phenotype due to the absence of tapetum. Presence of extra microsporocytes in the developing anthers and ovules. {ECO:0000269|PubMed:12897248}. FUNCTION: Receptor-like kinase that plays important roles in restricting the number of cells entering into male and female sporogenesis. Involved in cell specification during anther development and initiation of anther wall formation. {ECO:0000269|PubMed:12897248}.,FUNCTION: Receptor-like kinase that may play a role male and female sporogenesis. {ECO:0000250|UniProtKB:Q8RZV7}. ENOG411DSQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily Os09g0371400 protein A0A0P0XLD2 A0A0P0XLD2_ORYSJ Os09g0371400 OSNPB_090371400 ENOG411DSQB UGT78D1,UGT78D4,UGT78D2,UGT78D3 Q9S9P6,Q9LFJ9,Q9LFJ8,Q9LFK0,A0A1P8BEY4 U78D1_ARATH,U78D4_ARATH,U78D2_ARATH,U78D3_ARATH,A0A1P8BEY4_ARATH UDP-glycosyltransferase 78D1 (EC 2.4.1.-) (Flavonol-3-O-glucoside L-rhamnosyltransferase) (EC 2.4.1.159) (UDP-rhamnose:flavonol 3-O-glucoside rhamnosyltransferase),UDP-glycosyltransferase 78D4 (EC 2.4.1.-),UDP-glycosyltransferase 78D2 (EC 2.4.1.-) (Anthocyanin 3-O-glucosyltransferase) (Flavonol 3-O-glucosyltransferase) (EC 2.4.1.91) (UDP glucose:flavonoid 3-O-glucosyltransferase),UDP-glycosyltransferase 78D3 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein FUNCTION: Acts as a UDP-rhamnose:flavonol-3-O-glucoside rhamnosyltransferase. Keampferol and quercitin are used as substrates. Possesses low quercetin 3-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:12900416, ECO:0000269|PubMed:15352060}.,FUNCTION: Catalyzes the glycosylation of flavonoids from UDP-glucose. Catalyzes the glycosylation of anthocyanins from UDP-glucose. Possesses high quercetin 3-O-glucosyltransferase activity in vitro. Also active in vitro on benzoates and benzoate derivatives. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:15807784, ECO:0000269|PubMed:20085894}.,FUNCTION: Possesses low quercetin 3-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT1G30530-MONOMER;MetaCyc:AT1G30530-MONOMER;,ARA:AT5G17040-MONOMER;,MetaCyc:AT5G17050-MONOMER; Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100),Anthocyanin biosynthesis (00942),Flavone and flavonol biosynthesis (00944) 2.4.1.-; 2.4.1.159,2.4.1.-,2.4.1.-; 2.4.1.91 50095,48547,50486,49967,37439 UDP-glycosyltransferase 78D1 (EC 2.4.1.-) (Flavonol-3-O-glucoside L-rhamnosyltransferase) (EC 2.4.1.159) (UDP-rhamnose:flavonol 3-O-glucoside rhamnosyltransferase),UDP-glycosyltransferase 78D4 (EC 2.4.1.-),UDP-glycosyltransferase 78D2 (EC 2.4.1.-) (Anthocyanin 3-O-glucosyltransferase) (Flavonol 3-O-glucosyltransferase) (EC 2.4.1.91) (UDP glucose:flavonoid 3-O-glucosyltransferase),UDP-glycosyltransferase 78D3 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein intracellular membrane-bounded organelle [GO:0043231]; flavonol-3-O-glucoside L-rhamnosyltransferase activity [GO:0047230]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glycosyltransferase activity [GO:0008194]; flavonol biosynthetic process [GO:0051555]; response to karrikin [GO:0080167],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; anthocyanidin 3-O-glucosyltransferase activity [GO:0047213]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; flavonoid biosynthetic process [GO:0009813]; phenylpropanoid metabolic process [GO:0009698]; response to karrikin [GO:0080167],intracellular membrane-bounded organelle [GO:0043231]; flavonol 3-O-arabinosyltransferase activity [GO:0080059]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in leaves, flowers, siliques, and stems. {ECO:0000269|PubMed:12900416}. locus:2028190;,locus:2148241;,locus:2148126;,locus:2148231; AT1G30530,AT5G17040,AT5G17050,AT5G17030 3'-O-glucosyltransferase NA NA NA NA NA NA NA ENOG411DSQC Q9LQ19,F4IC79 Q9LQ19_ARATH,F4IC79_ARATH F16P17.2 protein (Uncharacterized protein At1g62870),Uncharacterized protein 86095,88372 F16P17.2 protein (Uncharacterized protein At1g62870),Uncharacterized protein nucleic acid binding [GO:0003676] locus:2015534;,locus:2034695; AT1G62870,AT1G12380 NA OSJNBa0013A04.12 protein (Os04g0261400 protein) (cDNA clone:002-148-E03, full insert sequence),Os02g0450000 protein,Os02g0450000 protein (Fragment) Q7F9J2,Q6EQZ3,A0A0P0VIK0 Q7F9J2_ORYSJ,Q6EQZ3_ORYSJ,A0A0P0VIK0_ORYSJ Os04g0261400 Os04g0261400 OsJ_14061 OSJNBa0013A04.12 OSNPB_040261400,Os02g0450000 OsJ_06582 OSJNBa0055I13.10 OSNPB_020450000,Os02g0450000 OSNPB_020450000 ENOG411EDQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EAK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha amylase C-terminal all-beta domain NA NA NA NA NA NA NA ENOG411EAK4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAKJ TPR14,TPR13 Q9FJQ0,Q9LX19 Q9FJQ0_ARATH,Q9LX19_ARATH At5g65160 (Similarity to tetratricopeptide repeat protein 2) (Tetratricopeptide repeat (TPR)-containing protein),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T31P16_80) 65017,65471 At5g65160 (Similarity to tetratricopeptide repeat protein 2) (Tetratricopeptide repeat (TPR)-containing protein),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein T31P16_80) locus:2171860;,locus:2184148; AT5G65160,AT5G10090 tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EAKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EAKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411E0JQ KRP4 Q8GYJ3 KRP4_ARATH Cyclin-dependent kinase inhibitor 4 (Inhibitor/interactor of CDK protein 7) (KIP-related protein 4) FUNCTION: Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1. {ECO:0000269|PubMed:16376885}. 32068 Cyclin-dependent kinase inhibitor 4 (Inhibitor/interactor of CDK protein 7) (KIP-related protein 4) cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; cell cycle arrest [GO:0007050]; negative regulation of cell cycle [GO:0045786]; negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045736] TISSUE SPECIFICITY: Expressed in leaves and flowers and at lower levels in roots. {ECO:0000269|PubMed:11449057}. locus:2046427; AT2G32710 kinase inhibitor Cyclin-dependent kinase inhibitor 5 (KIP-related protein 5) Q283L0 KRP5_ORYSJ KRP5 Os03g0137800 LOC_Os03g04490 OsJ_008991 ENOG411E0JS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0201000 protein) (cDNA clone:J023013K23, full insert sequence) Q10QD3 Q10QD3_ORYSJ Os03g0201000 LOC_Os03g10390 Os03g0201000 OSNPB_030201000 ENOG411E0JR Q9SKA8 Q9SKA8_ARATH Elongation factor 1-delta, putative (DUF936) (Uncharacterized protein At2g31920) 64354 Elongation factor 1-delta, putative (DUF936) (Uncharacterized protein At2g31920) translation elongation factor activity [GO:0003746] locus:2045278; AT2G31920 Plant protein of unknown function (DUF936) NA NA NA NA NA NA NA ENOG411E0JB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411E0JJ Q84WW7,F4I346 Q84WW7_ARATH,F4I346_ARATH RING/FYVE/PHD-type zinc finger family protein (Uncharacterized protein At1g29800),RING/FYVE/PHD-type zinc finger family protein 55763,54349 RING/FYVE/PHD-type zinc finger family protein (Uncharacterized protein At1g29800),RING/FYVE/PHD-type zinc finger family protein ruffle membrane [GO:0032587]; metal ion binding [GO:0046872]; phosphatidylinositol binding [GO:0035091]; regulation of ruffle assembly [GO:1900027],metal ion binding [GO:0046872] locus:2019362; AT1G29800 FYVE zinc finger LAs17 Binding protein Lsb3p-like (Os02g0233100 protein) (cDNA clone:J023108C10, full insert sequence) Q6EUF2 Q6EUF2_ORYSJ Os02g0233100 OJ1705_E12.35 OSNPB_020233100 ENOG411EI29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0632400 protein,Os04g0632000 protein,Os09g0550650 protein,Os08g0179100 protein,Os04g0633850 protein Q0J9T1,Q0J9T6,A0A0P0WF60,A0A0N7KR83,A0A0P0XCZ6,A0A0P0WF91 Q0J9T1_ORYSJ,Q0J9T6_ORYSJ,A0A0P0WF60_ORYSJ,A0A0N7KR83_ORYSJ,A0A0P0XCZ6_ORYSJ,A0A0P0WF91_ORYSJ Os04g0632400 Os04g0632400 OSNPB_040632400,Os04g0632000 Os04g0632000 OSNPB_040632000,Os04g0632400 OSNPB_040632400,Os09g0550650 OSNPB_090550650,Os08g0179100 OSNPB_080179100,Os04g0633850 OSNPB_040633850 ENOG411E9E4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E70H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411E70I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os04g0533900 protein (Fragment) Q0JBG2 Q0JBG2_ORYSJ Os04g0533900 Os04g0533900 OSNPB_040533900 ENOG411E70N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0706600 protein,Os05g0542001 protein Q5N8F3,C7J2H9 Q5N8F3_ORYSJ,C7J2H9_ORYSJ Os01g0706600 OsJ_03192 OSNPB_010706600 P0510F09.2 P0692C11.24,Os05g0542001 Os05g0542001 OSNPB_050542001 ENOG411E70C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ArfGap NA NA NA NA NA NA NA ENOG411E70D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0284700 protein Q8GVN0 Q8GVN0_ORYSJ Os07g0284700 OSJNBa0028O21.35 OSJNBb0091I19.106 OSNPB_070284700 ENOG411E70F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transglycosylase NA NA NA NA NA NA NA ENOG411E70G O22729,F4I7D8 O22729_ARATH,F4I7D8_ARATH At1g61170 (F11P17.11 protein) (Uncharacterized protein At1g61170),Uncharacterized protein 27852,29363 At1g61170 (F11P17.11 protein) (Uncharacterized protein At1g61170),Uncharacterized protein locus:2008450;,locus:6530298136; AT1G61170,AT1G11125 NA NA NA NA NA NA NA NA ENOG411E70X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os04g0415800 protein A0A0P0WA35 A0A0P0WA35_ORYSJ Os04g0415800 OSNPB_040415800 ENOG411E70Y MIP1B Q9LRM4 MIP1B_ARATH B-box domain protein 31 (AtBBX31) (Microprotein 1B) FUNCTION: Developmental regulator acting by forming heterodimeric complexes, that sequester CO and CO-like (COL) proteins into non-functional complexes (PubMed:27015278). Involved in the CO-mediated long-day flowering-promotion pathway (PubMed:27015278). Engages CO and the transcriptional repressor TPL in a tripartite complex (By similarity). Involved in the CO-mediated long-day flowering-promotion pathway (PubMed:27015278). {ECO:0000250|UniProtKB:Q1G3I2, ECO:0000269|PubMed:27015278}. 13659 B-box domain protein 31 (AtBBX31) (Microprotein 1B) nucleus [GO:0005634]; protein binding, bridging [GO:0030674]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; circadian rhythm [GO:0007623]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; response to UV-B [GO:0010224] TISSUE SPECIFICITY: Highly expressed in shoot apical meristems and in vascular tissues of leaves. Also detected in petioles. {ECO:0000269|PubMed:27015278}. locus:2095562; AT3G21890 BBOX NA NA NA NA NA NA NA ENOG411E70Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0138400 protein C7J0K5 C7J0K5_ORYSJ Os03g0138400 OSNPB_030138400 ENOG411E70P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0473600 protein B9G446 B9G446_ORYSJ Os09g0473600 OsJ_29728 OSNPB_090473600 ENOG411E70R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411E70S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E70T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0128400 protein) (cDNA clone:001-111-E01, full insert sequence) Q9SNL3 Q9SNL3_ORYSJ Os03g0128400 LOC_Os03g03640 Os03g0128400 OsJ_09264 OSNPB_030128400 ENOG411E70U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0711400 protein,Os05g0210525 protein (Fragment) Q6ZIR5,A0A0N7KKC0 Q6ZIR5_ORYSJ,A0A0N7KKC0_ORYSJ Os02g0711400 OJ1038_A06.25 OSNPB_020711400,Os05g0210525 OSNPB_050210525 ENOG411E70V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0912400 protein A0A0P0VC04 A0A0P0VC04_ORYSJ Os01g0912400 OSNPB_010912400 ENOG411E70W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os12g0443101 protein A0A0P0Y9V1 A0A0P0Y9V1_ORYSJ Os12g0443101 OSNPB_120443101 ENOG411E708 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E709 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sugar transmembrane transporter activity Bidirectional sugar transporter SWEET7b (OsSWEET7b),Bidirectional sugar transporter SWEET7a (OsSWEET7a),Bidirectional sugar transporter SWEET7c (OsSWEET7c),Os09g0256600 protein,Bidirectional sugar transporter SWEET (Fragment),Os12g0178500 protein,Os09g0259200 protein (Fragment) Q0J349,Q0J361,Q2QWX8,A0A0N7KQF6,A0A0P0XKA2,A0A0P0Y7G6,A0A0P0XKG6 SWT7B_ORYSJ,SWT7A_ORYSJ,SWT7C_ORYSJ,A0A0N7KQF6_ORYSJ,A0A0P0XKA2_ORYSJ,A0A0P0Y7G6_ORYSJ,A0A0P0XKG6_ORYSJ SWEET7B Os09g0258700 LOC_Os09g08440,SWEET7A Os09g0254600 LOC_Os09g08030 OsJ_28550,SWEET7C Os12g0178500 LOC_Os12g07860 OsJ_35418,Os09g0256600 OSNPB_090256600,Os09g0254600 OSNPB_090254600,Os12g0178500 OSNPB_120178500,Os09g0259200 OSNPB_090259200 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the membrane. {ECO:0000256|RuleBase:RU910715}. ENOG411E700 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E701 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0535500 protein Q69JZ5 Q69JZ5_ORYSJ Os09g0535500 Os09g0535500 OSNPB_090535500 P0569E11.7 ENOG411E702 Q8LGF0 Q8LGF0_ARATH At5g40645 (NOI protein) (Nitrate-responsive NOI protein) (RPM1-interacting protein 4 (RIN4) family protein) 8334 At5g40645 (NOI protein) (Nitrate-responsive NOI protein) (RPM1-interacting protein 4 (RIN4) family protein) locus:505006667; AT5G40645 Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411E703 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E704 F1P2.200 Q9SN73 Q9SN73_ARATH DnaJ/Hsp40 cysteine-rich domain superfamily protein (Uncharacterized protein At3g47650) (Uncharacterized protein F1P2.200) 14546 DnaJ/Hsp40 cysteine-rich domain superfamily protein (Uncharacterized protein At3g47650) (Uncharacterized protein F1P2.200) chloroplast [GO:0009507]; heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] locus:2079132; AT3G47650 defective protein 2 Os06g0332800 protein (Putative bundle sheath defective protein) (cDNA clone:001-011-D08, full insert sequence) Q69WH2 Q69WH2_ORYSJ Os06g0332800 Os06g0332800 OsJ_21207 OSNPB_060332800 P0531C01.26 P0577H07.34 ENOG411E705 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI NA NA NA NA NA NA NA ENOG411E5JK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0249200 protein (Ring-H2 zinc finger protein-like) Q6K506 Q6K506_ORYSJ OSJNBa0011N12.24 Os02g0249200 OSNPB_020249200 ENOG411DSNA RBP47B' Q8VXZ9 R47BP_ARATH Polyadenylate-binding protein RBP47B' (Poly(A)-binding protein RBP47B') (RNA-binding protein 47B') (AtRBP47B prime) (AtRBP47B') FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. {ECO:0000250}. 46597 Polyadenylate-binding protein RBP47B' (Poly(A)-binding protein RBP47B') (RNA-binding protein 47B') (AtRBP47B prime) (AtRBP47B') cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; cellular response to heat [GO:0034605]; mRNA processing [GO:0006397] locus:2150215; AT5G19350 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os03g0174100 protein (RNA recognition motif family protein, expressed) (cDNA clone:J013000M06, full insert sequence) Q10R21 Q10R21_ORYSJ Os03g0174100 LOC_Os03g07800 OSNPB_030174100 ENOG411DSNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DSNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Targeting protein for Xklp2 (TPX2) Os12g0577000 protein (Targeting protein for Xklp2 containing protein, expressed) Q2QN69 Q2QN69_ORYSJ Os12g0577000 LOC_Os12g38790 OSNPB_120577000 ENOG411DSND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor OJ000223_09.13 protein (Os04g0486400 protein) (cDNA clone:J033125B02, full insert sequence) Q7XUC2 Q7XUC2_ORYSJ OJ000223_09.13 Os04g0486400 OsJ_15250 OSNPB_040486400 ENOG411DSNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CPDc Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding Protein With Associated Ligand-like (Os01g0665300 protein),Os01g0665300 protein,Os05g0566200 protein (Fragment) Q5SN52,A0A0P0V693,A0A0P0WQX3 Q5SN52_ORYSJ,A0A0P0V693_ORYSJ,A0A0P0WQX3_ORYSJ P0003E08.20-1 Os01g0665300 OsJ_02926 OSNPB_010665300,Os01g0665300 OSNPB_010665300,Os05g0566200 OSNPB_050566200 ENOG411DSNM ABCG35,ABCG29,ABCG36 Q7PC86,Q94A18,Q9XIE2,F4J1I6 AB35G_ARATH,AB29G_ARATH,AB36G_ARATH,F4J1I6_ARATH ABC transporter G family member 35 (ABC transporter ABCG.35) (AtABCG35) (Pleiotropic drug resistance protein 7),ABC transporter G family member 29 (ABC transporter ABCG.29) (AtABCG29) (Pleiotropic drug resistance protein 1),ABC transporter G family member 36 (ABC transporter ABCG.36) (AtABCG36) (Pleiotropic drug resistance protein 8) (Protein PENETRATION 3),Pleiotropic drug resistance 1 DISRUPTION PHENOTYPE: Less sensitive to compatible pathogens (P.syringae pv tomato) due to accelerated cell death and lesion formation. {ECO:0000269|PubMed:16415066, ECO:0000269|PubMed:16473969}. shoot FW root length and chlorophyll contents of ko-1 plants are significantly lower than those of wild-type plants,shoot FW root length and chlorophyll contents of ko-2 plants are significantly lower than those of wild-type plants,mutants allow increased penetration by inappropiate pathogens (eg barley powdery mildew Blumeria graminis f. sp hordei Erysiphe pisi (tribe Erysipheae) and B. g. hordei (tribe Blumerieae)). pen3-1 mutants are resistant to E. cichoracearum and become chlorotic after E. cichoracearum infection. Susceptible to barley and pea powdery mildew, potato late blight; Resistant to Erysiphe cichoracearum-S. Somerville-2006 FUNCTION: May be a general defense protein. {ECO:0000250}.,FUNCTION: Key factor that controls the extent of cell death in the defense response. Necessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. {ECO:0000269|PubMed:16415066, ECO:0000269|PubMed:16473969, ECO:0000269|PubMed:16732289, ECO:0000269|PubMed:17355438, ECO:0000269|PubMed:19000165, ECO:0000269|PubMed:19095898}. 162570,160298,165082,159769 ABC transporter G family member 35 (ABC transporter ABCG.35) (AtABCG35) (Pleiotropic drug resistance protein 7),ABC transporter G family member 29 (ABC transporter ABCG.29) (AtABCG29) (Pleiotropic drug resistance protein 1),ABC transporter G family member 36 (ABC transporter ABCG.36) (AtABCG36) (Pleiotropic drug resistance protein 8) (Protein PENETRATION 3),Pleiotropic drug resistance 1 chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; drug transmembrane transport [GO:0006855]; organic hydroxy compound transport [GO:0015850]; p-coumaryl alcohol transport [GO:1901140]; regulation of lignin biosynthetic process [GO:1901141],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; cadmium ion transmembrane transporter activity [GO:0015086]; cadmium ion transport [GO:0015691]; cellular response to indolebutyric acid stimulus [GO:0071366]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; drug transmembrane transport [GO:0006855]; indole glucosinolate catabolic process [GO:0042344]; negative regulation of defense response [GO:0031348]; response to abscisic acid [GO:0009737]; systemic acquired resistance [GO:0009627],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810] TISSUE SPECIFICITY: Ubiquitous with higher levels in roots. {ECO:0000269|PubMed:12430018}.,TISSUE SPECIFICITY: Expressed in roots and stems, and, to a lower extent, in seedling and inflorescence. {ECO:0000269|PubMed:12430018}.,TISSUE SPECIFICITY: Ubiquitous (at protein level). Higher levels in root hairs, stomata, epidermal cells, and hydathodes. Concentrated at the infection site of infected plants, including papillae and haustoria. {ECO:0000269|PubMed:12430018, ECO:0000269|PubMed:16415066, ECO:0000269|PubMed:17355438, ECO:0000269|PubMed:19000165}. locus:2037703;,locus:2094952;,locus:2025931; AT1G15210,AT3G16340,AT1G59870 pleiotropic drug resistance ABC transporter G family member 38 (OsABCG38) (Pleiotropic drug resistance protein 15) (OsPDR15),ABC transporter G family member 42 (OsABCG42) (Pleiotropic drug resistance protein 12) (OsPDR12),Os06g0554800 protein (Fragment),Os01g0724500 protein (Fragment),Os01g0724400 protein Q7FMW4,Q5Z9S8,A0A0P0WY08,A0A0P0V7P2,A0A0P0V7M5 AB38G_ORYSJ,AB42G_ORYSJ,A0A0P0WY08_ORYSJ,A0A0P0V7P2_ORYSJ,A0A0P0V7M5_ORYSJ ABCG38 PDR15 Os01g0724500 LOC_Os01g52560 P0022F10.18,ABCG42 PDR12 Os06g0554800 LOC_Os06g36090 P0458E11.3-1 P0458E11.3-2,Os06g0554800 OSNPB_060554800,Os01g0724500 OSNPB_010724500,Os01g0724400 OSNPB_010724400 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411DSNT GONST1,GONST2 Q941R4,Q84L09,A0A1P8B1R5,A0A1P8B1R6 GONS1_ARATH,GONS2_ARATH,A0A1P8B1R5_ARATH,A0A1P8B1R6_ARATH GDP-mannose transporter GONST1 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1),GDP-mannose transporter GONST2 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 2),Golgi nucleotide sugar transporter 1 DISRUPTION PHENOTYPE: Dwarf phenotype, necrotic lesions and a constitutive hypersensitive response to salicylic acid induction. {ECO:0000269|PubMed:23695979}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:23695979}. FUNCTION: Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen (PubMed:11595802, PubMed:20576760, PubMed:27381418). Required for the luminal synthesis of a variety of plant cell surface components (PubMed:11595802). Is required for the correct mannosylation of the glycosylinositol phosphoceramides (GIPC). Can indifferently transport GDP-mannose, GDP-Glucose, GDP-Fucose or GDP-Galactose in vitro (PubMed:23695979, PubMed:27381418). {ECO:0000269|PubMed:11595802, ECO:0000269|PubMed:20576760, ECO:0000269|PubMed:23695979, ECO:0000269|PubMed:27381418}.,FUNCTION: GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen. {ECO:0000269|PubMed:15480787}. 36840,41631,27320,22898 GDP-mannose transporter GONST1 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1),GDP-mannose transporter GONST2 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 2),Golgi nucleotide sugar transporter 1 Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; GDP-fucose transmembrane transporter activity [GO:0005457]; GDP-mannose transmembrane transporter activity [GO:0005458]; nucleotide-sugar transmembrane transporter activity [GO:0005338]; carbohydrate transport [GO:0008643]; GDP-fucose transport [GO:0015783]; GDP-mannose transport [GO:0015784],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; nucleotide-sugar transmembrane transporter activity [GO:0005338]; carbohydrate transport [GO:0008643]; GDP-mannose transmembrane transport [GO:1990570]; GDP-mannose transport [GO:0015784]; nucleotide-sugar transport [GO:0015780],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] TISSUE SPECIFICITY: Expressed in rosette leaves, stems, flowers and siliques. {ECO:0000269|PubMed:15480787}. locus:2054090;,locus:2025047; AT2G13650,AT1G07290 GDP-Mannose transporter Os08g0107400 protein (Putative GDP-Mannose transporter) (cDNA clone:J023123E22, full insert sequence),Oryza sativa Japonica Group mRNA (Os03g0826300 protein),Os08g0107400 protein Q6ZD70,I0J129,A0A0P0XAS7 Q6ZD70_ORYSJ,I0J129_ORYSJ,A0A0P0XAS7_ORYSJ P0450B04.20-1 Os08g0107400 OSNPB_080107400,Os03g0826300 OSNPB_030826300,Os08g0107400 OSNPB_080107400 ENOG411DSN1 TGA4,TGA1,TGA3,TGA7 Q39162,Q39237,Q39234,Q93ZE2,A8MQK5 TGA4_ARATH,TGA1_ARATH,TGA3_ARATH,TGA7_ARATH,A8MQK5_ARATH Transcription factor TGA4 (Ocs element-binding factor 4) (OBF4) (bZIP transcription factor 57) (AtbZIP57),Transcription factor TGA1 (DNA-binding protein TGA1a-like protein) (bZIP transcription factor 47) (AtbZIP47),Transcription factor TGA3 (bZIP transcription factor 22) (AtbZIP22),Transcription factor TGA7 (bZIP transcription factor 50) (AtbZIP50),BZIP transcription factor family protein No phenotype as single knock-out; tga1 tga4 double knock-out plants are more susceptible to Pseudomonas syringae pv. maculicola ES4326 than wild-type. FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.,FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.,FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. 41751,42064,43755,41913,34335 Transcription factor TGA4 (Ocs element-binding factor 4) (OBF4) (bZIP transcription factor 57) (AtbZIP57),Transcription factor TGA1 (DNA-binding protein TGA1a-like protein) (bZIP transcription factor 47) (AtbZIP47),Transcription factor TGA3 (bZIP transcription factor 22) (AtbZIP22),Transcription factor TGA7 (bZIP transcription factor 50) (AtbZIP50),BZIP transcription factor family protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; defense response to bacterium [GO:0042742]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.,TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}. locus:2184078;,locus:2171820;,locus:2030551;,locus:2029366; AT5G10030,AT5G65210,AT1G22070,AT1G77920 Transcription factor Transcription factor TGAL6 (bZIP transcription factor 37) (OsbZIP37) A0A0P0WFC8 TGAL6_ORYSJ TGAL6 Os04g0637000 LOC_Os04g54474 OsJ_16330 OSJNBb0034I13.13 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411DSN0 TIF3E1 Q9C5Z3 EIF3E_ARATH Eukaryotic translation initiation factor 3 subunit E (AtEIF3E-1) (eIF3e) (p48) (Eukaryotic translation initiation factor 3 subunit 6) (AtINT6) (INT-6) DISRUPTION PHENOTYPE: Several floral development defects, including delayed flowering, reduced sepaloid petals and short stamens. Male gametophytic lethal. {ECO:0000269|PubMed:18067529, ECO:0000269|PubMed:20444226}. FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (Potential). Regulates negatively translation during flower development (PubMed:18067529, PubMed:20444226). {ECO:0000255|HAMAP-Rule:MF_03004, ECO:0000269|PubMed:18067529, ECO:0000269|PubMed:20444226}. MISCELLANEOUS: The PCI domain is protease-resistant. {ECO:0000269|PubMed:16679540}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 51750 Eukaryotic translation initiation factor 3 subunit E (AtEIF3E-1) (eIF3e) (p48) (Eukaryotic translation initiation factor 3 subunit 6) (AtINT6) (INT-6) cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic proteasome complex [GO:0031597]; eukaryotic translation initiation factor 3 complex [GO:0005852]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; translation repressor activity [GO:0030371]; DNA-templated transcription, initiation [GO:0006352]; flower development [GO:0009908]; photomorphogenesis [GO:0009640]; response to salt stress [GO:0009651]; translation [GO:0006412] locus:2082593; AT3G57290 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit E (eIF3e) (Eukaryotic translation initiation factor 3 subunit 6),Os07g0222300 protein (Fragment) Q69W37,Q8GVI0,Q69W36,A0A0N7KN53,A0A0P0X6F9 Q69W37_ORYSJ,Q8GVI0_ORYSJ,Q69W36_ORYSJ,A0A0N7KN53_ORYSJ,A0A0P0X6F9_ORYSJ OJ1641_C04.124-2 Os07g0167000 OSNPB_070167000,P0592C06.125 Os07g0222300 OsJ_23573 OSNPB_070222300,OJ1641_C04.124-1 Os07g0167000 OsJ_23219 OSNPB_070167000,Os07g0222300 OSNPB_070222300,Os07g0503700 OSNPB_070503700 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03004}. ENOG411DSN2 IQD22 Q2NNE0 Q2NNE0_ARATH Calmodulin binding protein IQD22 (IQ-domain 22) 53475 Calmodulin binding protein IQD22 (IQ-domain 22) response to gibberellin [GO:0009739] locus:2127243; AT4G23060 IQ calmodulin-binding motif family protein OSJNBa0088I22.17 protein (Os04g0569900 protein) (cDNA clone:J023086B08, full insert sequence),Os04g0569900 protein (Fragment) Q7FAG5,A0A0P0WE17 Q7FAG5_ORYSJ,A0A0P0WE17_ORYSJ Os04g0569900 Os04g0569900 OsJ_15829 OSJNBa0088I22.17 OSNPB_040569900,Os04g0569900 OSNPB_040569900 ENOG411DSN5 FTSH2,FTSH8,VAR2 O80860,Q8W585,A0A1P8AXC1 FTSH2_ARATH,FTSH8_ARATH,A0A1P8AXC1_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (AtFTSH2) (EC 3.4.24.-) (Protein VARIEGATED 2),ATP-dependent zinc metalloprotease FTSH 8, chloroplastic (AtFTSH8) (EC 3.4.24.-),FtsH extracellular protease family DISRUPTION PHENOTYPE: Leaf-variegated. Mutations can be complemented by overexpression of FTSH8. The presence of both FTSH1 or FTSH5 (subunit type A) and FTSH2 or FTSH8 (subunit type B) is essential for an active complex formation. {ECO:0000269|PubMed:10849347}.,DISRUPTION PHENOTYPE: No visible changes in phenotype, probably due to a complementation by FTSH2. The presence of both FTSH1 or FTSH5 (subunit type A) and FTSH2 or FTSH8 (subunit type B) is essential for an active complex formation. {ECO:0000269|PubMed:14630971}. Lesser ability to deal with photoinhibition.,variegated.,More variegated than ftsh2.,Completely white seedlings. Restoration of Heterozygocity of FTSH8 allows chloroplast development in the cotyledons.,Double mutant suppresses leaf variegation due to var2 loss of function. First leaves are smaller with reduced cell size.,Double mutant suppresses leaf variegation due to var2 loss of function. First leaves are smaller with reduced cell size.,variegated,Variegation caused by var2 single mutant is suppressed.,WT phenotype. The single var2 variegated phenotype is suppresed.,no visible difference in leaf morphology and variegation when grown under normal light and temperature conditions compared to wild-type. Pigment defective embryo; Variegated leaves-S. Rodermel-2000 FUNCTION: Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions, but not involved in thermotolerance. {ECO:0000269|PubMed:10849347, ECO:0000269|PubMed:11717304, ECO:0000269|PubMed:14630971, ECO:0000269|PubMed:16972866}.,FUNCTION: Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions. 3.4.24.B20; 3.4.24.- 74157,73198,74678 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (AtFTSH2) (EC 3.4.24.-) (Protein VARIEGATED 2),ATP-dependent zinc metalloprotease FTSH 8, chloroplastic (AtFTSH8) (EC 3.4.24.-),FtsH extracellular protease family chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; multicellular organism development [GO:0007275]; photoinhibition [GO:0010205]; photosystem I assembly [GO:0048564]; photosystem II repair [GO:0010206]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; PSII associated light-harvesting complex II catabolic process [GO:0010304]; reactive oxygen species metabolic process [GO:0072593]; response to cytokinin [GO:0009735]; thylakoid membrane organization [GO:0010027],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; photoinhibition [GO:0010205]; photosystem II repair [GO:0010206]; proteolysis [GO:0006508]; PSII associated light-harvesting complex II catabolic process [GO:0010304]; thylakoid membrane organization [GO:0010027],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; metalloendopeptidase activity [GO:0004222] DEVELOPMENTAL STAGE: Low expression in cotyledons, increasing with leaves development. {ECO:0000269|PubMed:15918877}. TISSUE SPECIFICITY: Expressed in cotyledons, cauline and rosette leaves, stems, sepals, flovers and siliques. Very low in roots. {ECO:0000269|PubMed:14996218}. locus:2052806;,locus:2009235; AT2G30950,AT1G06430 ATP-dependent zinc metalloprotease FtsH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (OsFTSH2) (EC 3.4.24.-),Os06g0669400 protein Q655S1,A0A0P0X012 FTSH2_ORYSJ,A0A0P0X012_ORYSJ FTSH2 Os06g0669400 LOC_Os06g45820 OsJ_021445 P0686E06.31-1 P0686E06.31-2,Os06g0669400 OSNPB_060669400 FUNCTION: Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. ENOG411DSN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E8KM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8KX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411E8KY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411ECK8 AIG2B,AIG2A,AIG2 Q9MBH2,P54121,A0A1I9LNH9 AIG2B_ARATH,AIG2A_ARATH,A0A1I9LNH9_ARATH Protein AIG2 B (EC 2.3.2.-) (Avirulence-induced gene 2 protein B) (Putative gamma-glutamylcyclotransferase),Protein AIG2 A (EC 2.3.2.-) (Avirulence-induced gene 2 protein) (Avirulence-induced gene 2 protein A) (AvrRpt2-induced gene 2) (Protein AIG2) (Putative gamma-glutamylcyclotransferase),AIG2-like (Avirulence induced gene) family protein FUNCTION: Putative gamma-glutamylcyclotransferase. {ECO:0000250|UniProtKB:O75223}. 2.3.2.- 19465,19445,14145 Protein AIG2 B (EC 2.3.2.-) (Avirulence-induced gene 2 protein B) (Putative gamma-glutamylcyclotransferase),Protein AIG2 A (EC 2.3.2.-) (Avirulence-induced gene 2 protein) (Avirulence-induced gene 2 protein A) (AvrRpt2-induced gene 2) (Protein AIG2) (Putative gamma-glutamylcyclotransferase),AIG2-like (Avirulence induced gene) family protein chloroplast [GO:0009507]; plasma membrane [GO:0005886]; protein domain specific binding [GO:0019904]; transferase activity, transferring acyl groups [GO:0016746],cytosol [GO:0005829]; transferase activity, transferring acyl groups [GO:0016746]; response to bacterium [GO:0009617] DEVELOPMENTAL STAGE: Peaks of expression at the time of rosette development and flowers production. {ECO:0000305|PubMed:18214976}.,DEVELOPMENTAL STAGE: Peak of expression around the time of early inflorescence. {ECO:0000305|PubMed:18214976}. TISSUE SPECIFICITY: Expressed in roots, leaves and stems. {ECO:0000305|PubMed:18214976}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000305|PubMed:18214976}. locus:2087042;,locus:2086987; AT3G28940,AT3G28930 AIG2-like family NA NA NA NA NA NA NA ENOG411ECK5 Q9FKV9,A0A1P8B9S6,A0A1P8B9Q9 Q9FKV9_ARATH,A0A1P8B9S6_ARATH,A0A1P8B9Q9_ARATH AT5G44290 protein (Cyclin-dependent protein kinase-like protein) (Protein kinase superfamily protein),Protein kinase superfamily protein R-ATH-674695;R-ATH-6796648; 72948,57536,70804 AT5G44290 protein (Cyclin-dependent protein kinase-like protein) (Protein kinase superfamily protein),Protein kinase superfamily protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2158715; AT5G44290 S_TKc NA NA NA NA NA NA NA ENOG411ECK4 CRRSP31,CRRSP34,CRRSP37,CRRSP21,CRRSP32,CRRSP30,CRRSP35,CRRSP33,CRRSP36,CRRSP40 Q9LRK6,Q9LRK3,Q9LRK0,Q9LRL8,Q9LRK5,A0MEX7,Q9LRK2,Q9LRK4,Q9LRK1,Q9SVH9,A0A1I9LLU2 CRR31_ARATH,CRR34_ARATH,CRR37_ARATH,CRR21_ARATH,CRR32_ARATH,CRR30_ARATH,CRR35_ARATH,CRR33_ARATH,CRR36_ARATH,CRR40_ARATH,A0A1I9LLU2_ARATH Putative cysteine-rich repeat secretory protein 31,Cysteine-rich repeat secretory protein 34,Putative cysteine-rich repeat secretory protein 37,Putative cysteine-rich repeat secretory protein 21,Putative cysteine-rich repeat secretory protein 32,Cysteine-rich repeat secretory protein 30,Putative cysteine-rich repeat secretory protein 35,Putative cysteine-rich repeat secretory protein 33,Putative cysteine-rich repeat secretory protein 36,Putative cysteine-rich repeat secretory protein 40,Receptor-like protein kinase-related family protein 30112,29278,29361,29211,29170,30983,29634,28981,28699,31037,23111 Putative cysteine-rich repeat secretory protein 31,Cysteine-rich repeat secretory protein 34,Putative cysteine-rich repeat secretory protein 37,Putative cysteine-rich repeat secretory protein 21,Putative cysteine-rich repeat secretory protein 32,Cysteine-rich repeat secretory protein 30,Putative cysteine-rich repeat secretory protein 35,Putative cysteine-rich repeat secretory protein 33,Putative cysteine-rich repeat secretory protein 36,Putative cysteine-rich repeat secretory protein 40,Receptor-like protein kinase-related family protein extracellular region [GO:0005576],kinase activity [GO:0016301] locus:2095567;,locus:2095617;,locus:2095652;,locus:2095632;,locus:2121474; AT3G22010,AT3G22040,AT3G22057,AT3G21937,AT3G22020,AT3G22000,AT3G22050,AT3G22030,AT3G22053,AT4G20680 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ECK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Collagenase NA NA NA NA NA NA NA ENOG411ECK6 AGL71 Q9LT93,A0A1P8BDR0,A0A1P8BDN7,F4KEP6,F4KEP8 AGL71_ARATH,A0A1P8BDR0_ARATH,A0A1P8BDN7_ARATH,F4KEP6_ARATH,F4KEP8_ARATH MADS-box protein AGL71 (Protein AGAMOUS-LIKE 71),AGAMOUS-like 71 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21609362}. FUNCTION: MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. 24079,25508,22596,26511,19903 MADS-box protein AGL71 (Protein AGAMOUS-LIKE 71),AGAMOUS-like 71 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of flower development [GO:0009909]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of flower development [GO:0009909]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. locus:2166498; AT5G51870 K-box region NA NA NA NA NA NA NA ENOG411ECK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECK0 O64745 BBE16_ARATH Berberine bridge enzyme-like 16 (AtBBE-like 16) (EC 1.1.1.-) ARA:AT2G34810-MONOMER; 1.1.1.- 61307 Berberine bridge enzyme-like 16 (AtBBE-like 16) (EC 1.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611] locus:2044747; AT2G34810 domain-containing protein NA NA NA NA NA NA NA ENOG411ECK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NA NA NA NA NA NA NA ENOG411ECK2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-beta hydroxysteroid dehydrogenase/isomerase family NA NA NA NA NA NA NA ENOG411ECKX A0A1P8AR03,F4I2N3 A0A1P8AR03_ARATH,F4I2N3_ARATH Phosphoglycerate mutase family protein 26058,26566 Phosphoglycerate mutase family protein catalytic activity [GO:0003824]; metabolic process [GO:0008152] locus:504956275; AT1G09935 PGAM NA NA NA NA NA NA NA ENOG411ECKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECKW SSP Q7XJT7,Q9SIJ1,O23010 SSP_ARATH,Q9SIJ1_ARATH,O23010_ARATH Probable inactive receptor-like kinase SSP (Protein SHORT SUSPENSOR),Protein kinase family protein (Protein kinase superfamily protein) (Uncharacterized protein At2g17170),Interleukin-1 receptor-associated kinase 4 protein (Uncharacterized protein At2g17160) Embryo defective; 50% defective seeds-W. Lukowitz-2007 FUNCTION: Probable inactive protein kinase that activates the YODA MAP kinase cascade, which regulates the asymmetric first division and embryo polarity, by promoting the elongation of the zygote and the development of its basal daughter cell into the extra-embryonic suspensor. Acts as an adapter at the plasma membrane, possibly by recruiting and binding an activator. {ECO:0000269|PubMed:19286558}. MISCELLANEOUS: BSK12 exerts a paternal effect on embryonic patterning. Transcripts produced but not translated in the sperm cells are delivered to the seed where they become translated, resulting in a transient accumulation of the protein in both products of the double fertilization, the zygote and the central cell. {ECO:0000269|PubMed:19286558}. 52281,36907,10600 Probable inactive receptor-like kinase SSP (Protein SHORT SUSPENSOR),Protein kinase family protein (Protein kinase superfamily protein) (Uncharacterized protein At2g17170),Interleukin-1 receptor-associated kinase 4 protein (Uncharacterized protein At2g17160) cytoplasmic side of plasma membrane [GO:0009898]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; positive regulation of intracellular signal transduction [GO:1902533]; protein phosphorylation [GO:0006468]; suspensor development [GO:0010098]; zygote elongation [GO:0080159],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] DEVELOPMENTAL STAGE: Transiently expressed at the protein level in the zygote upon fertilization. No longer detected by the time of the first division. TISSUE SPECIFICITY: Expressed at the mRNA level in the sperm cells in mature pollen, but the protein is only detectable in the zygote and the micropylar endosperm upon fertilization. {ECO:0000269|PubMed:19286558}. locus:2827634;,locus:2059667;,locus:2059662; AT2G17090,AT2G17170,AT2G17160 ATP binding binding kinase protein kinase protein tyrosine kinase NA NA NA NA NA NA NA ENOG411ECKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECKK FH7 Q9XIE0 FH7_ARATH Formin-like protein 7 (AtFH7) (AtFORMIN-7) FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. {ECO:0000250}. 98582 Formin-like protein 7 (AtFH7) (AtFORMIN-7) plasma membrane [GO:0005886]; actin binding [GO:0003779] locus:2025981; AT1G59910 formin homology 2 domain-containing protein FH2 domain-containing protein NA NA NA NA NA NA NA ENOG411ECKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os11g0184600 protein A0A0P0XZF8 A0A0P0XZF8_ORYSJ Os11g0184600 OSNPB_110184600 ENOG411ECKG LECRK59,LecRK-V.9 Q9SZD5,A0A1P8B3P9 LRK59_ARATH,A0A1P8B3P9_ARATH L-type lectin-domain containing receptor kinase V.9 (LecRK-V.9) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein 2.7.11.1 74736,76405 L-type lectin-domain containing receptor kinase V.9 (LecRK-V.9) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] locus:2119936; AT4G29050 Legume lectin domain NA NA NA NA NA NA NA ENOG411ECKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411DUQ7 ACA13,ACA12 Q9LIK7,Q9LY77 ACA13_ARATH,ACA12_ARATH Putative calcium-transporting ATPase 13, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 13),Calcium-transporting ATPase 12, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 12) FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles. {ECO:0000250}. ARA:AT3G22910-MONOMER;,ARA:AT3G63380-MONOMER; R-ATH-418359;R-ATH-5578775;R-ATH-936837; 3.6.3.8 112528,113707 Putative calcium-transporting ATPase 13, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 13),Calcium-transporting ATPase 12, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 12) integral component of plasma membrane [GO:0005887]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; calmodulin binding [GO:0005516]; metal ion binding [GO:0046872] locus:2084578;,locus:2087363; AT3G22910,AT3G63380 Calcium-transporting ATPase Calcium-transporting ATPase 7, plasma membrane-type (OsACA7) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7) Q7XEK4 ACA7_ORYSJ ACA7 Os10g0418100 LOC_Os10g28240 OsJ_31537 OSJNBa0061K21.21 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles (By similarity). Involved in salt stress tolerance (PubMed:24286292). {ECO:0000250, ECO:0000269|PubMed:24286292}. ENOG411DWZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0250900 protein (cDNA clone:002-135-A06, full insert sequence) Q8GRV7 Q8GRV7_ORYSJ P0021G06.129 Os07g0250900 OSJNBb0056I06.113 OSNPB_070250900 ENOG411DWZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain BURP domain-containing protein 13 (OsBURP13) (Protein RAFTIN 1) (OsRAFTIN1) Q7F8U7 BURPD_ORYSJ BURP13 RAFTIN1 Os08g0496800 LOC_Os08g38810 B1142B04.37 P0026F07.8 DISRUPTION PHENOTYPE: Collapsed pollen with low viability. Almost no seed production. {ECO:0000269|PubMed:14612572}. FUNCTION: Required for pollen development. Probably synthesized in the tapetum, packaged in Ubisch bodies and transported at appropriate stages to the micropsores. {ECO:0000269|PubMed:14612572}. ENOG411DWZ3 FPP3,FPP2,FPP1 Q9MA92,Q9SFF4,Q9CAP9,A0A1P8APB6,A0A1P8AVP2 FPP3_ARATH,FPP2_ARATH,FPP1_ARATH,A0A1P8APB6_ARATH,A0A1P8AVP2_ARATH Filament-like plant protein 3 (AtFPP3),Filament-like plant protein 2 (AtFPP2),Filament-like plant protein 1 (AtFPP1),Filament-like protein (DUF869) 69646,71106,87836,57313,83977 Filament-like plant protein 3 (AtFPP3),Filament-like plant protein 2 (AtFPP2),Filament-like plant protein 1 (AtFPP1),Filament-like protein (DUF869) cytoplasmic vesicle [GO:0031410]; protein binding, bridging [GO:0030674]; regulation of exocyst localization [GO:0060178] TISSUE SPECIFICITY: Trichomes. {ECO:0000269|PubMed:15276459}. locus:2096304;,locus:2204755; AT3G05270,AT1G21810,AT1G77580 filament-like plant protein Coiled-coil protein (Coiled-coil protein, putative, expressed) (Os11g0170200 protein),Os12g0169100 protein,Myosin heavy chain-like protein (Os07g0506600 protein) (cDNA clone:J013135H18, full insert sequence),Os07g0506600 protein (Fragment),Os12g0169100 protein (Fragment) Q53JH6,Q0IPT6,Q8H3G8,A0A0P0X6K6,A0A0P0Y7R3 Q53JH6_ORYSJ,Q0IPT6_ORYSJ,Q8H3G8_ORYSJ,A0A0P0X6K6_ORYSJ,A0A0P0Y7R3_ORYSJ LOC_Os11g06910 Os11g0170200 OsJ_33115 OSNPB_110170200,Os12g0169100 Os12g0169100 OSNPB_120169100,Os07g0506600 OsJ_24377 OSJNBb0062D12.121 OSNPB_070506600,Os07g0506600 OSNPB_070506600,Os12g0169100 OSNPB_120169100 ENOG411DWZ5 Q66GP4 PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770, chloroplastic 69509 Pentatricopeptide repeat-containing protein At5g13770, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast organization [GO:0009658]; RNA modification [GO:0009451] locus:2177115; AT5G13770 Pentatricopeptide repeat-containing protein OSJNBa0088A01.11 protein (Os04g0583101 protein) (Os04g0583150 protein) (cDNA clone:J013040G18, full insert sequence) Q7XNE0 Q7XNE0_ORYSJ Os04g0583101 Os04g0583150 OsJ_15910 OSJNBa0088A01.11 OSNPB_040583101 ENOG411DWZ4 MUG13.24 Q1PE01 Q1PE01_ARATH DNA repair REX1-B protein 24564 DNA repair REX1-B protein locus:2175264; AT5G04910 NA Os01g0265700 protein (cDNA clone:002-180-E02, full insert sequence) Q5NBH1 Q5NBH1_ORYSJ Os01g0265700 Os01g0265700 OSNPB_010265700 P0499C11.19 ENOG411DWZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NAD dependent epimerase/dehydratase family protein, expressed (Os03g0748100 protein) (cDNA clone:002-141-D03, full insert sequence) Q10CW5 Q10CW5_ORYSJ Os03g0748100 LOC_Os03g53690 Os03g0748100 OSNPB_030748100 ENOG411DWZ6 F4P12_20 Q9LFI5 Q9LFI5_ARATH At3g53320 (Mediator of RNA polymerase II transcription subunit-like protein) (Uncharacterized protein At3g53320/F4P12_20) (Uncharacterized protein F4P12_20) 59157 At3g53320 (Mediator of RNA polymerase II transcription subunit-like protein) (Uncharacterized protein At3g53320/F4P12_20) (Uncharacterized protein F4P12_20) microtubule associated complex [GO:0005875] locus:2083926; AT3G53320 NA Os05g0121800 protein Q60F39 Q60F39_ORYSJ Os05g0121800 OJ1001_G01.13 OSNPB_050121800 ENOG411DWZ8 CYP21-4,CYP21-3,FIPS3 Q9C835,Q94A16,F4JC20 CP21D_ARATH,CP21C_ARATH,FIPS3_ARATH Peptidyl-prolyl cis-trans isomerase CYP21-4 (PPIase CYP21-4) (EC 5.2.1.8) (Cyclophilin of 21 kDa 4) (Cyclophilin-21-4),Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial (PPIase CYP21-3) (EC 5.2.1.8) (Cyclophilin of 21 kDa 3) (Rotamase CYP21-3),FIP1[III]-like protein (AtFIP1(III)) (Factor interacting with poly(A) polymerase-like 3) (AtFIPS3) (Protein HOMOLOG OF YEAST FIP1 [III]) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}.,FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.,FUNCTION: Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex. {ECO:0000250|UniProtKB:Q6UN15}. R-ATH-72163;R-ATH-77595; 5.2.1.8 26427,26042,115371 Peptidyl-prolyl cis-trans isomerase CYP21-4 (PPIase CYP21-4) (EC 5.2.1.8) (Cyclophilin of 21 kDa 4) (Cyclophilin-21-4),Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial (PPIase CYP21-3) (EC 5.2.1.8) (Cyclophilin of 21 kDa 3) (Rotamase CYP21-3),FIP1[III]-like protein (AtFIP1(III)) (Factor interacting with poly(A) polymerase-like 3) (AtFIPS3) (Protein HOMOLOG OF YEAST FIP1 [III]) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; RNA binding [GO:0003723]; mRNA polyadenylation [GO:0006378]; pre-mRNA cleavage required for polyadenylation [GO:0098789] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}.,TISSUE SPECIFICITY: Ubiquitous, mostly in aerial organs. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2103420;,locus:2065205;,locus:2084259; AT3G66654,AT2G47320,AT3G66652 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q7EYT3 Q7EYT3_ORYSJ P0640E12.105 Os07g0476500 OsJ_24221 OSNPB_070476500 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DWZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411DWZC F24I3.70,EDA7 Q9M1J9,A0A1I9LSC9,A0A1I9LSC8 Q9M1J9_ARATH,A0A1I9LSC9_ARATH,A0A1I9LSC8_ARATH AT3g56990/F24I3_70 (Embryo sac development arrest 7) (Uncharacterized protein F24I3.70),Embryo sac development arrest 7 79667,62164,67952 AT3g56990/F24I3_70 (Embryo sac development arrest 7) (Uncharacterized protein F24I3.70),Embryo sac development arrest 7 nucleolus [GO:0005730]; megagametogenesis [GO:0009561],integral component of membrane [GO:0016021],nucleus [GO:0005634] locus:2080630; AT3G56990 Nucleolar protein Os06g0128400 protein (Fragment) Q0DEY7 Q0DEY7_ORYSJ Os06g0128400 Os06g0128400 OSNPB_060128400 ENOG411DWZB AtFAH Q8RW90 Q8RW90_ARATH At1g12050/F12F1_8 (Fumarylacetoacetase) FUNCTION: Converts fumarylacetoacetate to acetoacetate and fumarate (PubMed:22980205). Involved in tyrosine catabolic pathway. Catalyzes the final step in the tyrosine degradation pathway (PubMed:22980205, PubMed:23743712, PubMed:27097641). {ECO:0000269|PubMed:22980205, ECO:0000269|PubMed:23743712, ECO:0000269|PubMed:27097641}. ARA:AT1G12050-MONOMER; R-ATH-71182; Tyrosine metabolism (00350),Microbial metabolism in diverse environments (01120),Styrene degradation (00643),Metabolic pathways (01100) 46095 At1g12050/F12F1_8 (Fumarylacetoacetase) cytosol [GO:0005829]; fumarylacetoacetase activity [GO:0004334]; cell death [GO:0008219]; homogentisate catabolic process [GO:1902000]; tyrosine catabolic process [GO:0006572] locus:2008845; AT1G12050 fumarylacetoacetase EC 3.7.1.2 Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate hydrolase),Os02g0196800 protein (Fragment) Q6H7M1,A0A0P0VFX8 FAH_ORYSJ,A0A0P0VFX8_ORYSJ FAH Os02g0196800 LOC_Os02g10310 OJ1524_D08.17 OsJ_05754,Os02g0196800 OSNPB_020196800 FUNCTION: Converts fumarylacetoacetate to acetoacetate and fumarate. Involved in tyrosine catabolic pathway. Catalyzes the final step in the tyrosine degradation pathway. {ECO:0000250|UniProtKB:Q8RW90}. ENOG411DWZE TPST Q3EDG5 TPST_ARATH Protein-tyrosine sulfotransferase (EC 2.8.2.20) (Tyrosylprotein sulfotransferase) Seedlings of tpst-1 had stunted roots and smaller cotyledons compared with the WT. tpst-1 has an abnormally shaped root apical meristem due to disorganized cell division and expansion. At 15 days after germination the leaves of the tpst-1 plants are small and pale green the number of higher order veins is reduced and the secondary veins often do not close. At the flowering stage tpst-1 has smaller rosettes tiny leaves showing early senescence shorter inflorescence and a reduced number of flowers and siliques. The fertility and seed set of tpst-1 are normal. Small cotyledons; Small, pale green leaves; Short roots and inflorescence stems; Early senescence; Abnormal vein morphology; Disorganized RAM-Y. Matsubayashi-2009 FUNCTION: Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides. {ECO:0000269|PubMed:19666544}. ARA:AT1G08030-MONOMER; 2.8.2.20 56989 Protein-tyrosine sulfotransferase (EC 2.8.2.20) (Tyrosylprotein sulfotransferase) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; heparan sulfate 6-O-sulfotransferase activity [GO:0017095]; protein-tyrosine sulfotransferase activity [GO:0008476]; copper ion homeostasis [GO:0055070]; heparan sulfate proteoglycan biosynthetic process, enzymatic modification [GO:0015015]; innate immune response [GO:0045087]; negative regulation of ethylene biosynthetic process [GO:0010366]; regulation of gene expression [GO:0010468]; regulation of root meristem growth [GO:0010082]; response to auxin [GO:0009733]; stem cell population maintenance [GO:0019827] TISSUE SPECIFICITY: Expressed throughout the plant body, highest levels of expression are in the root apical meristem. {ECO:0000269|PubMed:19666544}. locus:2205135; AT1G08030 NA Os06g0158200 protein C7J3N2 C7J3N2_ORYSJ Os06g0158200 Os06g0158200 OSNPB_060158200 ENOG411DWZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily NA NA NA NA NA NA NA ENOG411DWZG Q8RXD8,Q9FH64,F4JZ57 Q8RXD8_ARATH,Q9FH64_ARATH,F4JZ57_ARATH Transducin/WD40 repeat-like superfamily protein (WD repeat protein-like),AT5G66240 protein (Transducin/WD40 repeat-like superfamily protein) (WD repeat protein-like),Transducin/WD40 repeat-like superfamily protein 36519,36141,35997 Transducin/WD40 repeat-like superfamily protein (WD repeat protein-like),AT5G66240 protein (Transducin/WD40 repeat-like superfamily protein) (WD repeat protein-like),Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; Set1C/COMPASS complex [GO:0048188]; chromatin binding [GO:0003682]; histone H3-K4 trimethylation [GO:0080182]; plant-type cell wall modification [GO:0009827] locus:2154996; AT5G66240 WD repeat-containing protein Os07g0589400 protein (Putative WD repeat protein) (cDNA clone:001-038-G05, full insert sequence) (cDNA clone:006-309-F09, full insert sequence),Os07g0589400 protein (Fragment) Q84Z07,A0A0P0X888 Q84Z07_ORYSJ,A0A0P0X888_ORYSJ Os07g0589400 OJ1174_G05.3 OsJ_24948 OSJNBb0005G07.130 OSNPB_070589400,Os07g0589400 OSNPB_070589400 ENOG411DWZF Q84TJ0,Q9LZA4,A0A1I9LQ25 PMT6_ARATH,PMT7_ARATH,A0A1I9LQ25_ARATH Probable methyltransferase PMT6 (EC 2.1.1.-),Probable methyltransferase PMT7 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2.1.1.- 67648,68357,67857 Probable methyltransferase PMT6 (EC 2.1.1.-),Probable methyltransferase PMT7 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],methyltransferase activity [GO:0008168] locus:2076264;,locus:2150670; AT3G10200,AT5G04060 Methyltransferase Os05g0378800 protein,Os05g0378800 protein (Fragment) Q65XH2,A0A0P0WLQ8,A0A0N7KKN9 Q65XH2_ORYSJ,A0A0P0WLQ8_ORYSJ,A0A0N7KKN9_ORYSJ Os05g0378800 OJ1126_B11.7 OSNPB_050378800,Os05g0378800 OSNPB_050378800 ENOG411DWZI Q949Y2,A0A1P8B8Y1,F4JSG7,F4JSG8 Q949Y2_ARATH,A0A1P8B8Y1_ARATH,F4JSG7_ARATH,F4JSG8_ARATH Transglutaminase family protein (Uncharacterized protein At4g19160),Transglutaminase family protein 34952,38137,49653,50708 Transglutaminase family protein (Uncharacterized protein At4g19160),Transglutaminase family protein locus:2134791; AT4G19160 NA NA NA NA NA NA NA NA ENOG411DWZH RPS9 Q9XJ27 RR9_ARATH 30S ribosomal protein S9, chloroplastic Embryo defective; Cotyledon; Twin embryos-D. Meinke-2004 FUNCTION: Binds directly to 16S ribosomal RNA. {ECO:0000250}. 22577 30S ribosomal protein S9, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; plastid small ribosomal subunit [GO:0000312]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; translation [GO:0006412] locus:2037222; AT1G74970 Ribosomal protein S9 30S ribosomal protein S9, chloroplast, putative, expressed (Os03g0769100 protein) (Putative 9S ribosomal protein) (Ribosomal protein S9) (cDNA clone:006-208-D02, full insert sequence) (cDNA clone:J013146D21, full insert sequence) Q9XJ28 Q9XJ28_ORYSJ rps9 OSJNBb0106M04.11 LOC_Os03g55930 Os03g0769100 OSJNBa0072F13.21 OSNPB_030769100 ENOG411DWZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os12g0600100 protein (TPR Domain containing protein, expressed) (cDNA clone:001-117-F02, full insert sequence),Os12g0599900 protein (TPR Domain containing protein, expressed) Q2QML3,Q2QML4 Q2QML3_ORYSJ,Q2QML4_ORYSJ LOC_Os12g40780 Os12g0600100 OSNPB_120600100,LOC_Os12g40770 Os12g0599900 OSNPB_120599900 ENOG411DWZJ SAP130B,SAP130A P0DKL6,P0DKL4 S130B_ARATH,S130A_ARATH Spliceosome-associated protein 130 B (AtSAP130b) (SAP 130 B) (Pre-mRNA-splicing factor SF3b 130 kDa subunit B) (SF3b130 B),Spliceosome-associated protein 130 A (AtSAP130a) (SAP 130 A) (Pre-mRNA-splicing factor SF3b 130 kDa subunit A) (SF3b130 A) DISRUPTION PHENOTYPE: The double mutant sap130a sap130b displays a slight reduction in the size of aerial organs and in the number of lateral roots, and is impaired in reproduction due to a reduced production of viable pollen and impaired female reproductive organs. Defect in the transition from microspore to the bicellular stage in pollen development. Reduced expression of QRT1 and QRT3. {ECO:0000269|PubMed:21680607}. FUNCTION: Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron (By similarity). Required for pollen and ovule development, especially during the transition from microspore to the bicellular stage in pollen development. Involved in the accumulation of QRT1 and QRT3 (PubMed:21680607). {ECO:0000250|UniProtKB:Q15393, ECO:0000269|PubMed:21680607}. 134967 Spliceosome-associated protein 130 B (AtSAP130b) (SAP 130 B) (Pre-mRNA-splicing factor SF3b 130 kDa subunit B) (SF3b130 B),Spliceosome-associated protein 130 A (AtSAP130a) (SAP 130 A) (Pre-mRNA-splicing factor SF3b 130 kDa subunit A) (SF3b130 A) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; microgametogenesis [GO:0055046]; plant ovule development [GO:0048481]; pollen development [GO:0009555]; pollen germination [GO:0009846] TISSUE SPECIFICITY: Expressed in roots, leaves, inflorescence and, to a lower extent, in siliques. {ECO:0000269|PubMed:21680607}.,TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, inflorescence and, to a lower extent, in siliques. {ECO:0000269|PubMed:21680607}. AT3G55220,AT3G55200 splicing factor 3b Os02g0137400 protein (Fragment) A0A0P0VEN2 A0A0P0VEN2_ORYSJ Os02g0137400 OSNPB_020137400 ENOG411DWZM Q9XID1 Q9XID1_ARATH Exostosin family protein (F23M19.7) (Glycosyltransferase) (Uncharacterized protein At1g34270) (Uncharacterized protein At1g34270; F23M19.7) 53886 Exostosin family protein (F23M19.7) (Glycosyltransferase) (Uncharacterized protein At1g34270) (Uncharacterized protein At1g34270; F23M19.7) integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2026103; AT1G34270 Exostosin family Os04g0670600 protein B9FD84,A0A0P0WGA4 B9FD84_ORYSJ,A0A0P0WGA4_ORYSJ Os04g0670600 OsJ_16573 OSNPB_040670600,Os04g0670600 OSNPB_040670600 ENOG411DWZN A0A1P8APL9,F4I2A1,F4HSS5,F4I2A0 A0A1P8APL9_ARATH,F4I2A1_ARATH,F4HSS5_ARATH,F4I2A0_ARATH Prolyl oligopeptidase family protein 63994,89063,82487,89405 Prolyl oligopeptidase family protein serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008],chloroplast [GO:0009507]; serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008] locus:2012888;,locus:2199814; AT1G76140,AT1G20380 prolyl endopeptidase Os01g0108200 protein (Putative prolyl endopeptidase) (cDNA clone:J023090K22, full insert sequence) Q658B2 Q658B2_ORYSJ Os01g0108200 Os01g0108200 OSNPB_010108200 P0482C06.18 ENOG411DWZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 Os01g0517500 protein (Putative polygalacturonase) Q5QLZ2 Q5QLZ2_ORYSJ Os01g0517500 Os01g0517500 B1108H10.26 OsJ_02002 OSNPB_010517500 ENOG411DWZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin efflux carrier Probable auxin efflux carrier component 1b (OsPIN1b) (OsPIN1c),Probable auxin efflux carrier component 1d (OsPIN1d) P0C0X5,Q0IQA5 PIN1B_ORYSJ,PIN1D_ORYSJ PIN1B Os11g0137000 LOC_Os11g04190 OsJ_32878,PIN1D Os12g0133800 LOC_Os12g04000 FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000305}. ENOG411DWZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Importin-beta N-terminal domain Os03g0294600 protein (Fragment) Q0DSQ6 Q0DSQ6_ORYSJ Os03g0294600 OSNPB_030294600 ENOG411DWZR FIPS5,FIP1[V] F4KDH9,A0A1P8BFZ5 FIPS5_ARATH,A0A1P8BFZ5_ARATH FIP1[V]-like protein (AtFIP1(V)) (Factor interacting with poly(A) polymerase 1-like 5) (AtFIPS5) (Protein HOMOLOG OF YEAST FIP1 [V]),FIP1[V]-like protein DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:16282318}. FUNCTION: Essential gene (PubMed:16282318). Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex (By similarity). {ECO:0000250|UniProtKB:Q6UN15, ECO:0000269|PubMed:16282318}. 133439,133078 FIP1[V]-like protein (AtFIP1(V)) (Factor interacting with poly(A) polymerase 1-like 5) (AtFIPS5) (Protein HOMOLOG OF YEAST FIP1 [V]),FIP1[V]-like protein nucleus [GO:0005634]; identical protein binding [GO:0042802]; RNA binding [GO:0003723]; mRNA processing [GO:0006397] TISSUE SPECIFICITY: Expressed in leaves, stems, flower tissues and roots. {ECO:0000269|PubMed:16282318}. locus:2155806; AT5G58040 Fip1 motif Os03g0725100 protein (Fragment),Os03g0725050 protein Q0DNZ7,C7IZF7,A0A0P0W2D0 Q0DNZ7_ORYSJ,C7IZF7_ORYSJ,A0A0P0W2D0_ORYSJ Os03g0725100 Os03g0725100 OSNPB_030725100,Os03g0725050 OSNPB_030725050,Os03g0725100 OSNPB_030725100 ENOG411DWZU GFAT Q9LIP9 Q9LIP9_ARATH Glutamine-fructose-6-phosphate transaminase 2 (Putative glucosamine-fructose-6-phosphate aminotransferase) R-ATH-446210; Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Alanine, aspartate and glutamate metabolism (00250),Metabolic pathways (01100) 74605 Glutamine-fructose-6-phosphate transaminase 2 (Putative glucosamine-fructose-6-phosphate aminotransferase) cytosol [GO:0005829]; carbohydrate derivative binding [GO:0097367]; glutamine-fructose-6-phosphate transaminase (isomerizing) activity [GO:0004360]; fructose 6-phosphate metabolic process [GO:0006002]; protein N-linked glycosylation [GO:0006487]; UDP-N-acetylglucosamine metabolic process [GO:0006047] locus:2076146; AT3G24090 Glucosamine-fructose-6-phosphate aminotransferase Os12g0131100 protein (Fragment),Os11g0133700 protein (Os12g0131150 protein) (Fragment) Q0IQC2,Q0IUU9 Q0IQC2_ORYSJ,Q0IUU9_ORYSJ Os12g0131100 Os12g0131100 OSNPB_120131100,Os11g0133700 Os12g0131150 OSNPB_110133700 OSNPB_120131150 ENOG411DWZT MPI7.7,T15F16.8 Q9FKN6,O22281 Q9FKN6_ARATH,O22281_ARATH Microfibril-associated protein-like (Microfibrillar-associated protein-like protein) (Putative microfibril-associated protein) (Similarity to microfibrillar-associated protein 1),Microfibrillar-associated protein-like protein (Putative microfibril-associated protein) (T15F16.8 protein) 51258,51172 Microfibril-associated protein-like (Microfibrillar-associated protein-like protein) (Putative microfibril-associated protein) (Similarity to microfibrillar-associated protein 1),Microfibrillar-associated protein-like protein (Putative microfibril-associated protein) (T15F16.8 protein) chloroplast [GO:0009507] locus:2170343;,locus:2133554; AT5G17900,AT4G08580 microfibrillar-associated protein Os02g0294000 protein (Putative microfibril-associated protein),Os02g0280100 protein (Putative MFAP1 protein),Os06g0335101 protein (Fragment) Q6KAB7,Q6ET26,A0A0P0WWK8 Q6KAB7_ORYSJ,Q6ET26_ORYSJ,A0A0P0WWK8_ORYSJ OJ1057_D08.31 Os02g0294000 OSNPB_020294000,Os02g0280100 Os02g0280100 OsJ_06251 OSNPB_020280100 P0444A09.35,Os06g0335101 OSNPB_060335101 ENOG411DWZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os12g0564100 protein A0A0P0YBD3 A0A0P0YBD3_ORYSJ Os12g0564100 OSNPB_120564100 ENOG411DWZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0501900 protein),Os05g0202200 protein (Fragment) Q337F8,A0A0P0WJ27 Q337F8_ORYSJ,A0A0P0WJ27_ORYSJ Os10g0501900 LOC_Os10g35800 Os10g0501900 OSNPB_100501900,Os05g0202200 OSNPB_050202200 ENOG411DWZY Q9FX99,Q9LT87,A0A1P8AP21,F4I3D1 Y1497_ARATH,Q9LT87_ARATH,A0A1P8AP21_ARATH,F4I3D1_ARATH Probable receptor-like protein kinase At1g49730 (EC 2.7.11.1),At3g19300 (Protein kinase superfamily protein),Protein kinase superfamily protein 2.7.11.1 72942,73036,52964,76443 Probable receptor-like protein kinase At1g49730 (EC 2.7.11.1),At3g19300 (Protein kinase superfamily protein),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2090634;,locus:2012191; AT1G49730,AT3G19300 receptor-like protein kinase OSJNBa0039K24.19 protein (Os04g0689400 protein) Q7XST7 Q7XST7_ORYSJ Os04g0689400 Os04g0689400 OSJNBa0039K24.19 OSNPB_040689400 ENOG411DWZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os12g0582900 protein (Fragment) A0A0P0YBP3 A0A0P0YBP3_ORYSJ Os12g0582900 OSNPB_120582900 ENOG411DWZZ TPR1,TPL Q0WV90,Q94AI7 TPR1_ARATH,TPL_ARATH Topless-related protein 1 (Protein MODIFIER OF SNC1 10),Protein TOPLESS (WUS-interacting protein 1) DISRUPTION PHENOTYPE: Partially suppresses the constitutive disease resistance phenotype of the snc1 mutant. {ECO:0000269|PubMed:20647385}.,DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with the other TPR proteins. {ECO:0000269|PubMed:16763149}. Embryos form cotyledons at the transition stage of embryogenesis that appear slightly stunted at later stages compared to wt embryos.,No obvious phenotype when grown at the restrictive temperature (29 degrees C) that produces the topless phenotype in the tpl-1 mutant. FUNCTION: Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1 (PubMed:20647385). Negative regulator of jasmonate responses (By similarity). {ECO:0000250, ECO:0000269|PubMed:20647385}.,FUNCTION: Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Negative regulator of multiple floral organ identity genes (PubMed:23034631). Required for ovule development (PubMed:25378179). {ECO:0000269|PubMed:16763149, ECO:0000269|PubMed:18258861, ECO:0000269|PubMed:20190735, ECO:0000269|PubMed:20360743, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:25378179}. MISCELLANEOUS: Overexpression of TPR1 leads to constitutive activation of defense responses.,MISCELLANEOUS: The tpl-1 gain-of-function allele is suppressed by mutations in the histone acetyltransferase HAG1 gene. The tpl-1 gain-of-function allele suppresses developmental defects in IAA12/BDL mutants. 124089,124298 Topless-related protein 1 (Protein MODIFIER OF SNC1 10),Protein TOPLESS (WUS-interacting protein 1) cytosol [GO:0005829]; nucleus [GO:0005634]; primary shoot apical meristem specification [GO:0010072]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; jasmonic acid mediated signaling pathway [GO:0009867]; negative regulation of transcription, DNA-templated [GO:0045892]; primary shoot apical meristem specification [GO:0010072]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051] DEVELOPMENTAL STAGE: Expressed in the embryo proper during early embryogenesis and in the developing vasculature in later stages (PubMed:16763149). Expressed dinamically in the proximal region and in the nucellus during ovule development and mainly observed in the nucellus in mature ovules (PubMed:25378179). {ECO:0000269|PubMed:16763149, ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Highly expressed in stamen primordium, microsporocyte, ovule primordium and megasporocyte during sporogenesis. {ECO:0000269|PubMed:25527103}.,TISSUE SPECIFICITY: Expressed in embryo and in extraembryonic tissues (PubMed:16763149). Expressed in inflorescences, flowers, floral meristems, developing anthers and ovules (PubMed:16461579). Detected in the vascular tissues, shoot apical meristem, cotyledons and young leaves (PubMed:23444332). Expressed ubiquitously in the pistils, stamens and pollens (PubMed:25378179). {ECO:0000269|PubMed:16461579, ECO:0000269|PubMed:16763149, ECO:0000269|PubMed:23444332, ECO:0000269|PubMed:25378179}. locus:2198888;,locus:2036204; AT1G80490,AT1G15750 primary shoot apical meristem specification NA NA NA NA NA NA NA ENOG411E5ZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411DUVG GIL1 F4KGE8 GIL1_ARATH Protein GRAVITROPIC IN THE LIGHT 1 DISRUPTION PHENOTYPE: Maintenance of negative gravitropic hypocotyls grow after exposure of seedlings to red (R) or far red (FR) light. Reduced seedlings viability. {ECO:0000269|PubMed:16640600}. Mutant plants exposed to pulses of FR continue to display negative gravitropism and so displayed a characteristic U-shaped hypocotyl phenotype. When exposed to continuous R at a photon irradiance of 5 lmol m)2 sec)1 the hypocotyls of the gil1-1 mutant remained predominantly negatively gravitropic. Upward hypocotyl growth under red light-T. Allen-2006 FUNCTION: Required for red (R) and far red (FR) light-induced and phytochrome-mediated deregulation of negative gravitropism leading to randomization of hypocotyl growth orientation. {ECO:0000269|PubMed:16640600}. 62843 Protein GRAVITROPIC IN THE LIGHT 1 negative gravitropism [GO:0009959]; response to red or far red light [GO:0009639] locus:2154583; AT5G58960 Plant protein of unknown function (DUF641) Expressed protein (Os03g0825600 protein) (cDNA clone:J033034N15, full insert sequence) Q10BA6 Q10BA6_ORYSJ OJ1111_B11.17 Os03g0825600 LOC_Os03g61040 OSNPB_030825600 ENOG411DVZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411DVZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase small domain NA NA NA NA NA NA NA ENOG411DVZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribose-5-phosphate isomerase OSJNBa0023J03.8 protein (Os04g0306400 protein) (cDNA clone:J033129E13, full insert sequence) Q7XVP0 Q7XVP0_ORYSJ Os04g0306400 Os04g0306400 OsJ_14213 OSJNBa0023J03.8 OSNPB_040306400 ENOG411EGXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DR6Q Q949U5,F4JDA1 Q949U5_ARATH,F4JDA1_ARATH GPI transamidase component Gpi16 subunit family protein (Uncharacterized protein At3g07140),GPI transamidase component Gpi16 subunit family protein 72167,72096 GPI transamidase component Gpi16 subunit family protein (Uncharacterized protein At3g07140),GPI transamidase component Gpi16 subunit family protein endoplasmic reticulum [GO:0005783]; GPI-anchor transamidase complex [GO:0042765]; attachment of GPI anchor to protein [GO:0016255],GPI-anchor transamidase complex [GO:0042765]; attachment of GPI anchor to protein [GO:0016255] locus:2098485; AT3G07140 GPI transamidase component Os11g0479232 protein (Fragment) A0A0P0Y212 A0A0P0Y212_ORYSJ Os11g0479232 OSNPB_110479232 ENOG411DR6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA o-methyltransferase Os05g0515500 protein (Putative o-methyltransferase ZRP4) (cDNA clone:J023002G03, full insert sequence),Os07g0464200 protein,O-methyltransferase ZRP4, putative, expressed (Os12g0441300 protein),O-methyltransferase family protein (Os11g0539500 protein),Os05g0515600 protein (Putative o-methyltransferase ZRP4),Os12g0445200 protein (Os12g0445300 protein),Os12g0444800 protein,Os12g0441600 protein (Fragment),Os07g0463600 protein (Fragment),Os07g0462800 protein Q75IK1,A3BJI2,Q2QS38,Q2R333,Q75IK0,A3CH16,A0A0P0Y9N9,A0A0P0Y9M0,A0A0P0X5N4,A0A0P0X625 Q75IK1_ORYSJ,A3BJI2_ORYSJ,Q2QS38_ORYSJ,Q2R333_ORYSJ,Q75IK0_ORYSJ,A3CH16_ORYSJ,A0A0P0Y9N9_ORYSJ,A0A0P0Y9M0_ORYSJ,A0A0P0X5N4_ORYSJ,A0A0P0X625_ORYSJ Os05g0515500 B1130G10.1 OSNPB_050515500 P0022D06.15,Os07g0464200 OsJ_24160 OSNPB_070464200,Os12g0441300 LOC_Os12g25450 OsJ_35976 OSNPB_120441300,LOC_Os11g33300 Os11g0539500 OSNPB_110539500,Os05g0515600 Os05g0515600 B1130G10.2 OSNPB_050515600 P0022D06.16,Os12g0445300 Os12g0445200 OsJ_35990 OSNPB_120445300,Os12g0444800 OSNPB_120444800,Os12g0441600 OSNPB_120441600,Os07g0463600 OSNPB_070463600,Os07g0462800 OSNPB_070462800 ENOG411DR6H Q9SUR4,F4JPA3 Q9SUR4_ARATH,F4JPA3_ARATH Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein (Uncharacterized protein AT4g23620) (Uncharacterized protein F9D16.90),Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 29018,30504 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein (Uncharacterized protein AT4g23620) (Uncharacterized protein F9D16.90),Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; aminoacyl-tRNA ligase activity [GO:0004812]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; 5S rRNA binding [GO:0008097]; aminoacyl-tRNA ligase activity [GO:0004812]; cobalt ion binding [GO:0050897]; structural constituent of ribosome [GO:0003735]; zinc ion binding [GO:0008270]; translation [GO:0006412] locus:2128479; AT4G23620 ribosomal protein Os05g0270000 protein (cDNA clone:J023137E11, full insert sequence),Os01g0593500 protein Q5W6B7,Q0JLK3 Q5W6B7_ORYSJ,Q0JLK3_ORYSJ Os05g0270000 OSJNBa0037H03.14 OSNPB_050270000,Os01g0593500 Os01g0593500 OsJ_02444 OSNPB_010593500 ENOG411DX15 UBC27 Q9FI61,F4KAG5 UBC27_ARATH,F4KAG5_ARATH Ubiquitin-conjugating enzyme E2 27 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 27) (Ubiquitin carrier protein 27),Ubiquitin-conjugating enzyme 27 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 21254,22601 Ubiquitin-conjugating enzyme E2 27 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 27) (Ubiquitin carrier protein 27),Ubiquitin-conjugating enzyme 27 nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209],cytosol [GO:0005829]; ATP binding [GO:0005524]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in seeds, pistils, siliques, hypocotyls and leaves. {ECO:0000269|PubMed:16339806}. locus:2157428; AT5G50870 ubiquitin-conjugating enzyme Os01g0925800 protein (Putative ubiquitin conjugating enzyme) (cDNA clone:J033027F19, full insert sequence) Q8S1Y5 Q8S1Y5_ORYSJ P0482D04.9 Os01g0925800 OsJ_04611 OSJNBa0093F16.10 OSNPB_010925800 ENOG411DR6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0514700 protein (cDNA clone:002-114-A08, full insert sequence) Q69IM5 Q69IM5_ORYSJ Os09g0514700 Os09g0514700 OSNPB_090514700 P0450E05.21 ENOG411DX19 LCAT4 Q71N54 LCAT4_ARATH Lecithin-cholesterol acyltransferase-like 4 (EC 2.3.1.-) ARA:AT4G19860-MONOMER; 2.3.1.- 60431 Lecithin-cholesterol acyltransferase-like 4 (EC 2.3.1.-) cytosol [GO:0005829]; O-acyltransferase activity [GO:0008374]; phospholipase activity [GO:0004620]; phospholipid catabolic process [GO:0009395] locus:2133975; AT4G19860 acyltransferase-like OSJNBa0008M17.7 protein (Os04g0615100 protein) (cDNA clone:J023027J22, full insert sequence) Q7XTS6 Q7XTS6_ORYSJ Os04g0615100 OsJ_16148 OSJNBa0008M17.7 OSNPB_040615100 ENOG411DX1G EFTS Q5XF75 EFTS_ARATH Elongation factor Ts, mitochondrial (EF-Ts) (EF-TsMt) FUNCTION: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. {ECO:0000255|HAMAP-Rule:MF_03135}. 43191 Elongation factor Ts, mitochondrial (EF-Ts) (EF-TsMt) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; translation elongation factor activity [GO:0003746]; mitochondrial translational elongation [GO:0070125] locus:2136158; AT4G11120 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity) Elongation factor Ts, mitochondrial (EF-Ts) (EF-TsMt),Os08g0399600 protein (Fragment),Elongation factor Ts (Fragment) Q6ZJS7,A0A0P0XG06,A0A0P0XFQ5 EFTS_ORYSJ,A0A0P0XG06_ORYSJ,A0A0P0XFQ5_ORYSJ EFTS Os08g0399600 OJ1051_A08.16 OsJ_27216/OsJ_27215,Os08g0399600 OSNPB_080399600 FUNCTION: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. {ECO:0000255|HAMAP-Rule:MF_03135}.,FUNCTION: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. {ECO:0000256|RuleBase:RU000642}. ENOG411DX1F VPS60-2,VPS60-1,VPS60.1,VPS60.2 Q9FMC5,Q9LPN5,F4J3V2,F4JXR3 VP602_ARATH,VP601_ARATH,F4J3V2_ARATH,F4JXR3_ARATH Vacuolar protein sorting-associated protein 60.2,Vacuolar protein sorting-associated protein 60.1,SNF7 family protein FUNCTION: Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. {ECO:0000305|PubMed:16488176}. 26238,26170,18823,30310 Vacuolar protein sorting-associated protein 60.2,Vacuolar protein sorting-associated protein 60.1,SNF7 family protein multivesicular body membrane [GO:0032585]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],multivesicular body [GO:0005771]; multivesicular body membrane [GO:0032585]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],intracellular [GO:0005622]; vacuolar transport [GO:0007034] locus:2075800;,locus:2175483; AT5G04850,AT3G10640 Charged multivesicular body protein NA NA NA NA NA NA NA ENOG411DX1D FRS6 Q9SSQ4 FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 FUNCTION: Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. 81604 Protein FAR1-RELATED SEQUENCE 6 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2035144; AT1G52520 protein FAR1-RELATED SEQUENCE Os02g0608300 protein Q0DZN8 Q0DZN8_ORYSJ Os02g0608300 Os02g0608300 OSNPB_020608300 ENOG411DX1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os02g0602600 protein A0A0P0VLM6 A0A0P0VLM6_ORYSJ Os02g0602600 OSNPB_020602600 ENOG411DX1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved mid region of cactin OSJNBa0065O17.10 protein (Os04g0558200 protein) Q7XPS1 Q7XPS1_ORYSJ OSJNBa0065O17.10 Os04g0558200 OSNPB_040558200 ENOG411DX1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein Os02g0180700 protein (Putative cinnamoyl-CoA reductase) (cDNA clone:J023064M01, full insert sequence) Q6H817 Q6H817_ORYSJ Os02g0180700 Os02g0180700 OJ1297_C09.8 OSNPB_020180700 ENOG411DQWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transducin WD-40 repeat protein family-like protein Os09g0477800 protein (Transducin / WD-40 repeat protein family-like protein) Q651Y0 Q651Y0_ORYSJ Os09g0477800 OsJ_29753 OSNPB_090477800 P0556A05.28 ENOG411DX1J F4IY34 F4IY34_ARATH Glycosyl hydrolase superfamily protein 42610 Glycosyl hydrolase superfamily protein hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] AT3G55780 Glycosyl hydrolase family 17 protein NA NA NA NA NA NA NA ENOG411EDS4 MXM12.3,MFB13.7 Q9FF13,Q9FLK3 Q9FF13_ARATH,Q9FLK3_ARATH Gb|AAF67766.1 69750,63033 Gb|AAF67766.1 locus:2177807;,locus:2163203; AT5G07790,AT5G61300 Inherit from KOG: Dishevelled associated activator of morphogenesis NA NA NA NA NA NA NA ENOG411EDSC DJ1F,YLS5 Q9M1G8,B3H6C6 DJ1F_ARATH,B3H6C6_ARATH DJ-1 protein homolog F (AtDJ-1F),Class I glutamine amidotransferase-like superfamily protein FUNCTION: May be involved in oxidative stress response. {ECO:0000250}. 43142,30134 DJ-1 protein homolog F (AtDJ-1F),Class I glutamine amidotransferase-like superfamily protein transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541] locus:2096986; AT3G54600,AT2G38860 DJ-1/PfpI family NA NA NA NA NA NA NA ENOG411EDST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411EDSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EDSX NGA2 Q9M268 NGA2_ARATH B3 domain-containing transcription factor NGA2 (Protein NGATHA 2) FUNCTION: Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. 34270 B3 domain-containing transcription factor NGA2 (Protein NGATHA 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; leaf development [GO:0048366]; regulation of leaf morphogenesis [GO:1901371]; transcription, DNA-templated [GO:0006351] locus:2079537; AT3G61970 B3 NA NA NA NA NA NA NA ENOG411EDSY SCPL32 Q4PSY2 SCP32_ARATH Serine carboxypeptidase-like 32 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 52825 Serine carboxypeptidase-like 32 (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:15908604}. locus:2008480; AT1G61130 Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411DQWV SOBIR1 Q9SKB2 SBIR1_ARATH Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (EC 2.7.10.1) (EC 2.7.11.1) (Protein EVERSHED) (Protein SUPPRESSOR OF BIR1-1) DISRUPTION PHENOTYPE: Suppresses BIR1 (bir1-1) disruption phenotype. When associated with AGD5/NEV disruption, premature shedding of floral organs and enlarge abscission zones. {ECO:0000269|PubMed:19616764, ECO:0000269|PubMed:20081191}. suppresses cell death and defense responses in bir1-1. FUNCTION: Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates. Acting as a counterplayer of BIR1, promotes the activation of plant defense and cell death (PubMed:19616764). Component of the RLP23-SOBIR1-BAK1 complex that mediates NLP-triggered immunity (PubMed:27251392). Functions as an inhibitor/regulator of abscission, probably by regulating membrane trafficking during abscission (PubMed:20081191). {ECO:0000269|PubMed:19616764, ECO:0000269|PubMed:20081191, ECO:0000269|PubMed:27251392}. 2.7.10.1; 2.7.11.1 71111 Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (EC 2.7.10.1) (EC 2.7.11.1) (Protein EVERSHED) (Protein SUPPRESSOR OF BIR1-1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; defense response [GO:0006952]; positive regulation of cell death [GO:0010942]; positive regulation of defense response [GO:0031349] DEVELOPMENTAL STAGE: Expressed in floral organ abscission zones (AZs) prior to cell separation and subsequent shedding. Also present within the style of developing fruits, at the bases of cauline leaves, and in the stems of the first rosette leaves. {ECO:0000269|PubMed:20081191}. TISSUE SPECIFICITY: Mostly present in leaves and flowers, with increasing expression in older flowers. {ECO:0000269|PubMed:20081191}. locus:2045228; AT2G31880 leucine-rich repeat receptor-like serine threonine tyrosine-protein kinase Os06g0288100 protein (Protein kinase-like protein) (Putative brassinosteroid insensitive 1) (cDNA clone:J013151H24, full insert sequence) Q5VMI1 Q5VMI1_ORYSJ Os06g0288100 Os06g0288100 B1197G05.6 b29O05.12 OSNPB_060288100 P0649C11.30 ENOG411E70A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQWP MNA5.21 Q0WUZ5,Q7Y030 Q0WUZ5_ARATH,Q7Y030_ARATH O-fucosyltransferase family protein (Uncharacterized protein At5g65470),At4g24530 (O-fucosyltransferase family protein) (PsRT17-1 like protein) 57068,58161 O-fucosyltransferase family protein (Uncharacterized protein At5g65470),At4g24530 (O-fucosyltransferase family protein) (PsRT17-1 like protein) transferase activity, transferring glycosyl groups [GO:0016757] locus:2168297;,locus:2121909; AT5G65470,AT4G24530 DUF246 domain-containing protein At1g04910-like Os09g0412200 protein (Putative auxin-independent growth promoter) (cDNA clone:J013073D17, full insert sequence) Q6ESK1 Q6ESK1_ORYSJ Os09g0412200 Os09g0412200 OJ1294_G06.25 OSNPB_090412200 ENOG411DQWQ MED27 Q8RWM3,A0A1I9LLB4 MED27_ARATH,A0A1I9LLB4_ARATH Mediator of RNA polymerase II transcription subunit 27 (Mediator of RNA polymerase II transcription subunit 3),Mediator of RNA polymerase II transcription subunit FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. 44511,39833 Mediator of RNA polymerase II transcription subunit 27 (Mediator of RNA polymerase II transcription subunit 3),Mediator of RNA polymerase II transcription subunit mediator complex [GO:0016592]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2083534; AT3G09180 Mediator complex subunit 27 Os01g0263500 protein B9EV33 B9EV33_ORYSJ Os01g0263500 OsJ_01196 OSNPB_010263500 ENOG411EDH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pre-SET motif NA NA NA NA NA NA NA ENOG411EDHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family N-hydroxycinnamoyl benzoyltransferase-like protein (Os07g0142700 protein),Os11g0244100 protein (Transferase family) (Transferase family protein),Os06g0103200 protein (Putative AER) (cDNA clone:J033143E17, full insert sequence) Q8H4K0,Q53M10,Q8H634 Q8H4K0_ORYSJ,Q53M10_ORYSJ,Q8H634_ORYSJ OJ1351_C05.126 Os07g0142700 OSNPB_070142700,Os11g0244100 LOC_Os11g13970 OSNPB_110244100,Os06g0103200 OsJ_19810 OSJNBa0075G19.25 OSNPB_060103200 ENOG411EDHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EDHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphotransferase enzyme family NA NA NA NA NA NA NA ENOG411EDWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411EEVM SAUR61,SAUR64,SAUR63,SAUR66,SAUR68,SAUR62,SAUR67,SAUR75 Q6NMM0,Q0V7Z5,F4I1H5,Q9C7Q1,Q29Q96,Q9C7Q8,F4I1I4,A0A1P8AN98,Q3E901 SAU61_ARATH,SAU64_ARATH,SAU63_ARATH,SAU66_ARATH,SAU68_ARATH,SAU62_ARATH,SAU67_ARATH,A0A1P8AN98_ARATH,Q3E901_ARATH Auxin-responsive protein SAUR61 (Protein SMALL AUXIN UP RNA 61),Auxin-responsive protein SAUR64 (Protein SMALL AUXIN UP RNA 64),Auxin-responsive protein SAUR63 (Protein SMALL AUXIN UP RNA 63),Auxin-responsive protein SAUR66 (Protein SMALL AUXIN UP RNA 66),Auxin-responsive protein SAUR68 (Protein SMALL AUXIN UP RNA 68),Auxin-responsive protein SAUR62 (Protein SMALL AUXIN UP RNA 62),Auxin-responsive protein SAUR67 (Protein SMALL AUXIN UP RNA 67),SAUR-like auxin-responsive protein family FUNCTION: May promote auxin-stimulated organ elongation, such as hypocotyls, stamen filaments and petals. {ECO:0000250|UniProtKB:F4I1H5}.,FUNCTION: May promote auxin-stimulated organ elongation, such as hypocotyls, stamen filaments and petals. {ECO:0000269|PubMed:22507274}. MISCELLANEOUS: Plants over-expressing SAUR63 display elongated hypocotyls, twisted inflorescence stems, and increased length of stamen filaments and petals. {ECO:0000269|PubMed:22507274}.,MISCELLANEOUS: Plants over-expressing SAUR62 display twisted inflorescence stems, and increased length of stamen filaments and petals. {ECO:0000269|PubMed:22507274}. 16192,15976,16153,15664,11661,16142,16346,21043,16316 Auxin-responsive protein SAUR61 (Protein SMALL AUXIN UP RNA 61),Auxin-responsive protein SAUR64 (Protein SMALL AUXIN UP RNA 64),Auxin-responsive protein SAUR63 (Protein SMALL AUXIN UP RNA 63),Auxin-responsive protein SAUR66 (Protein SMALL AUXIN UP RNA 66),Auxin-responsive protein SAUR68 (Protein SMALL AUXIN UP RNA 68),Auxin-responsive protein SAUR62 (Protein SMALL AUXIN UP RNA 62),Auxin-responsive protein SAUR67 (Protein SMALL AUXIN UP RNA 67),SAUR-like auxin-responsive protein family plasma membrane [GO:0005886]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of organ growth [GO:0046620],plasma membrane [GO:0005886]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; regulation of organ growth [GO:0046620]; stamen filament development [GO:0080086],nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of organ growth [GO:0046620],integral component of membrane [GO:0016021]; response to auxin [GO:0009733],auxin polar transport [GO:0009926]; regulation of organ growth [GO:0046620]; response to auxin [GO:0009733] TISSUE SPECIFICITY: Expressed in hypocotyls, cotyledons, petioles, young rosette leaves, apical portion of inflorescence stems, stamen filaments and petals. {ECO:0000269|PubMed:22507274}.,TISSUE SPECIFICITY: Expressed in stamen filaments and petals. {ECO:0000269|PubMed:22507274}. locus:2013753;,locus:2013608;,locus:2013598;,locus:2013698;,locus:2013653;,locus:2013593;,locus:2013703;,locus:2180270; AT1G29420,AT1G29450,AT1G29440,AT1G29500,AT1G29490,AT1G29430,AT1G29510,AT5G27780 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E3WJ Q9XFH8,Q9XFH9 TRXF1_ARATH,TRXF2_ARATH Thioredoxin F1, chloroplastic (AtTrxf1) (Thioredoxin F2) (AtTrxf2),Thioredoxin F2, chloroplastic (AtTrxf2) (Thioredoxin F1) (AtTrxf1) FUNCTION: Thiol-disulfide oxidoreductase involved in the redox regulation of enzymes of both reductive pentose phosphate pathway (Calvin-Benson cycle) and oxidative pentose phosphate pathway. Under light or reducing conditions, activates in chloroplast the glyceraldehyde-3-phosphate dehydrogenase, the phosphoribulokinase and the fructose-1,6-bisphosphate phosphatase, and inhibits the glucose-6-phosphate dehydrogenase. {ECO:0000269|PubMed:16263928, ECO:0000269|PubMed:19631646, ECO:0000269|PubMed:19825612}.,FUNCTION: Probable thiol-disulfide oxidoreductase involved in the redox regulation of enzymes of both reductive pentose phosphate pathway (Calvin-Benson cycle) and oxidative pentose phosphate pathway. {ECO:0000250}. 19325,19999 Thioredoxin F1, chloroplastic (AtTrxf1) (Thioredoxin F2) (AtTrxf2),Thioredoxin F2, chloroplastic (AtTrxf2) (Thioredoxin F1) (AtTrxf1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; enzyme activator activity [GO:0008047]; enzyme inhibitor activity [GO:0004857]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein domain specific binding [GO:0019904]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; negative regulation of catalytic activity [GO:0043086]; positive regulation of catalytic activity [GO:0043085]; regulation of carbohydrate metabolic process [GO:0006109]; response to light intensity [GO:0009642],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; enzyme activator activity [GO:0008047]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; positive regulation of catalytic activity [GO:0043085]; response to light intensity [GO:0009642] locus:2075522;,locus:2171322; AT3G02730,AT5G16400 Thioredoxin Thioredoxin F, chloroplastic (OsTrxf) (OsTrx03) Q8S091 TRXF_ORYSJ Os01g0913000 LOC_Os01g68480 OsJ_04513 P0470A12.34 FUNCTION: Thiol-disulfide oxidoreductase involved in the redox regulation of enzymes of both reductive pentose phosphate pathway (Calvin-Benson cycle) and oxidative pentose phosphate pathway. {ECO:0000250}. ENOG411E3WN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 1U3 (OsCASPL1U3) Q2R0D2 CSPLF_ORYSJ Os11g0649600 LOC_Os11g42960 OsJ_01638 ENOG411E3WB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 OSJNBa0010D21.10 protein (Os04g0648900 protein) (cDNA clone:006-207-A04, full insert sequence) (cDNA clone:J033003O11, full insert sequence),Os02g0712400 protein (Fragment) Q7XTV6,Q0DY68 Q7XTV6_ORYSJ,Q0DY68_ORYSJ Os04g0648900 OsJ_16418 OSJNBa0010D21.10 OSNPB_040648900,Os02g0712400 Os02g0712400 OSNPB_020712400 ENOG411E3WD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os01g0952900 protein (cDNA clone:J023035P08, full insert sequence) Q0JFZ1 Q0JFZ1_ORYSJ Os01g0952900 Os01g0952900 OSNPB_010952900 ENOG411E3WG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: alpha-16-mannosyltransferase NA NA NA NA NA NA NA ENOG411E3WR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb family transcription Os08g0346400 protein,Os08g0346400 protein (Transfactor-like) (cDNA clone:J033149L11, full insert sequence),Os09g0299000 protein Q7EZW2,Q84QT1,Q0J2T9 Q7EZW2_ORYSJ,Q84QT1_ORYSJ,Q0J2T9_ORYSJ P0410E11.132-2 Os08g0346400 P0404D10.1-2 OSNPB_080346400,P0410E11.132-1 P0404D10.1-1 Os08g0346400 OsJ_26993 OSNPB_080346400,Os09g0299000 OSNPB_090299000 ENOG411E3WT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0133200 protein (cDNA clone:001-010-H04, full insert sequence) Q943S3 Q943S3_ORYSJ Os01g0133200 OSJNBa0083M16.18 OSNPB_010133200 ENOG411E3W0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0653700 protein Q67WD0 Q67WD0_ORYSJ Os06g0653700 OsJ_22199 OSJNBa0085J13.20 OSNPB_060653700 P0709F06.3 ENOG411E3W4 ATS3A Q681K2 ATS3A_ARATH Embryo-specific protein ATS3A (Protein ARABIDOPSIS THALIANA SEED 3A) FUNCTION: May play a role during embryo development. {ECO:0000305}. 19949 Embryo-specific protein ATS3A (Protein ARABIDOPSIS THALIANA SEED 3A) extracellular region [GO:0005576]; plasmodesma [GO:0009506] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, cauline leaves and flowers. {ECO:0000269|PubMed:26259197}. locus:4515102981; AT2G41475 Embryo-specific protein 3 (ATS3) NA NA NA NA NA NA NA ENOG411DU96 SLY1 Q9SL48,O81774 SLY1_ARATH,O81774_ARATH SEC1 family transport protein SLY1 (AtSLY1),Sec1/munc18-like (SM) proteins superfamily (Uncharacterized protein AT4g31740) (Uncharacterized protein F28M20.70) FUNCTION: May be involved in the early secretory pathway. {ECO:0000250}. R-ATH-204005; 69151,18625 SEC1 family transport protein SLY1 (AtSLY1),Sec1/munc18-like (SM) proteins superfamily (Uncharacterized protein AT4g31740) (Uncharacterized protein F28M20.70) cytosol [GO:0005829]; protein transport [GO:0015031]; vesicle docking involved in exocytosis [GO:0006904],vesicle docking involved in exocytosis [GO:0006904] locus:2060954;,locus:2124779; AT2G17980,AT4G31740 SEC1 family transport protein SEC1 family transport protein SLY1,Os03g0620800 protein (Fragment) Q851W1,A0A0P0W0A2 SLY1_ORYSJ,A0A0P0W0A2_ORYSJ SLY1 Os03g0620800 LOC_Os03g42320 OsJ_11759 OSJNBb0111B07.11,Os03g0620800 OSNPB_030620800 FUNCTION: May be involved in the early secretory pathway. {ECO:0000250}. ENOG411DU95 F4JA39 F4JA39_ARATH SLH domain protein 63058 SLH domain protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plastid [GO:0009536] locus:2102375; AT3G25680 NA Os06g0499000 protein A0A0P0WWZ7 A0A0P0WWZ7_ORYSJ Os06g0499000 OSNPB_060499000 ENOG411DU92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os05g0414300 protein (Putative NBS-LRR type resistance protein) (cDNA clone:J013123O11, full insert sequence) (cDNA clone:J023011L08, full insert sequence),Os05g0414501 protein (Putative hAT dimerisation domain-containing protein),Os05g0414400 protein (Fragment) Q6AUA5,Q6AUA3,A0A0P0WMA1 Q6AUA5_ORYSJ,Q6AUA3_ORYSJ,A0A0P0WMA1_ORYSJ Os05g0414300 Os05g0414300 OJ1123_C08.2 OSNPB_050414300 P0017D10.16,Os05g0414501 OJ1123_C08.4 OsJ_18549 OSNPB_050414501 P0017D10.18,Os05g0414400 OSNPB_050414400 ENOG411DU9F Q93W93,A0A1P8ANH6 FBK22_ARATH,A0A1P8ANH6_ARATH F-box/kelch-repeat protein At1g55270,Galactose oxidase/kelch repeat superfamily protein 49210,34856 F-box/kelch-repeat protein At1g55270,Galactose oxidase/kelch repeat superfamily protein Cul3-RING ubiquitin ligase complex [GO:0031463]; protein ubiquitination [GO:0016567] locus:2035696; AT1G55270 F-box kelch-repeat protein Kelch motif family protein, expressed (Os03g0167800 protein) (cDNA clone:J023093H18, full insert sequence) (cDNA clone:J023112E08, full insert sequence),Kelch motif family protein, expressed (Os10g0409900 protein) (cDNA clone:J013158J20, full insert sequence),Os10g0409900 protein (Fragment) Q10R89,Q7XES2,A0A0P0XU18 Q10R89_ORYSJ,Q7XES2_ORYSJ,A0A0P0XU18_ORYSJ Os03g0167800 LOC_Os03g07160 Os03g0167800 OSNPB_030167800,LOC_Os10g26990 Os10g0409900 OSNPB_100409900,Os10g0409900 OSNPB_100409900 ENOG411DU9D KUA1 Q9LVS0 KUA1_ARATH Transcription factor KUA1 (Myb-related protein H) (AtMYBH) (AtMYBS3) (MYBS3-homolg protein) (Protein KUODA1) DISRUPTION PHENOTYPE: Defects in root growth. No visible hypocotyl phenotypes. Increased sensitivity to the gibberellic acid (GA) biosynthesis inhibitor paclobutrazol (PAC) and auxin (IAA) that inhibit hypocotyl elongation (PubMed:23888064). Reduced leaf size due to impaired cell expansion associated with an enhanced expression of peroxidase (Prxs) genes. This phenotype is reversed by SHAM treatment, a peroxidase inhibitor. Increased accumulation of H(2)O(2) (PubMed:24806884). Delayed senescence. Enhanced auxin-responsive gene expression (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. FUNCTION: Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. MISCELLANEOUS: 'Kuoda' means 'enlarge' or 'expand' in Chinese. {ECO:0000305|PubMed:24806884}. 39671 Transcription factor KUA1 (Myb-related protein H) (AtMYBH) (AtMYBS3) (MYBS3-homolg protein) (Protein KUODA1) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; zinc ion binding [GO:0008270]; auxin homeostasis [GO:0010252]; lateral root development [GO:0048527]; leaf development [GO:0048366]; leaf senescence [GO:0010150]; negative regulation of peroxidase activity [GO:2000469]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of cell growth [GO:0030307]; post-embryonic plant organ morphogenesis [GO:0090697]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to absence of light [GO:0009646]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates during leaf expansion. First observed at the tip of the leaves 12 days after sowing (DAS). At 14 DAS, expressed throughout the leaf blade to fade out thereafter in a basipetal manner. In mature leaves, detected in vascular tissue, especially in companion cells (PubMed:24806884). Accumulates to higher levels in old rosette leaves than in young rosette and cauline leaves (PubMed:25920996). {ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. TISSUE SPECIFICITY: Expressed ubiquitously, except in hypocotyls, root tips and lateral root primordia. {ECO:0000269|PubMed:25920996}. locus:2171519; AT5G47390 MYB family transcription factor Transcription factor MYBS3 (Myb-related protein S3) (OsMYBS3),Os10g0561400 protein Q7XC57,Q0IVP2 MYBS3_ORYSJ,Q0IVP2_ORYSJ MYBS3 LOC_Os10g41200 Os10g0561400 OsJ_32461 OSJNBb0089A17.8,Os10g0561400 OSNPB_100561400 FUNCTION: Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. MISCELLANEOUS: Plants over-expressing MYBS3 show increased tolerance to cold stress. {ECO:0000269|PubMed:20130099}. ENOG411DU9C CIP8 Q9SPL2 CIP8_ARATH E3 ubiquitin-protein ligase CIP8 (EC 2.3.2.27) (COP1-interacting protein 8) (RING-type E3 ubiquitin transferase CIP8) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. Probably forms a minimal ubiquitin ligase complex in cooperation with the E2 enzyme UBC8. Its interaction with COP1 suggests that it may participate in proteasome-mediated degradation of HY5 in vivo. {ECO:0000269|PubMed:10488108, ECO:0000269|PubMed:12028569}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-983168; 2.3.2.27 36965 E3 ubiquitin-protein ligase CIP8 (EC 2.3.2.27) (COP1-interacting protein 8) (RING-type E3 ubiquitin transferase CIP8) cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination [GO:0016567]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] TISSUE SPECIFICITY: Expressed in both light- and dark-grown seedlings. {ECO:0000269|PubMed:10488108}. locus:2177684; AT5G64920 E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411DVH6 CHL Q9STS7 CHL_ARATH Chloroplastic lipocalin (AtCHL) DISRUPTION PHENOTYPE: Increased sensitivity to photo-oxidative stress induced by drought, high light or paraquat, associated with a rapid accumulation of hydroxy fatty acids mediated by singlet oxygen (PubMed:19674405). When associated with disruption in TIL, highly sensitive to temperature, drought and light stresses than the single mutants, exhibiting intense lipid peroxidation. Seeds of this double mutant are very sensitive to natural and artificial aging, associated with the oxidation of polyunsaturated lipids (PubMed:23837879). {ECO:0000269|PubMed:19674405, ECO:0000269|PubMed:23837879}. Mutant plants show increased lipid peroxidation and more damage upon photooxidative stress induced by drought high light or paraquat. Sensitive to drought and photooxidative stress-F. Ouellet-2009 FUNCTION: Lipocalin that prevents thylakoidal membrane lipids peroxidation and confers protection against oxidative stress, especially mediated by singlet oxygen in response to high light and other stress (e.g. heat shocks) (PubMed:19674405, PubMed:23837879). Required for seed longevity by insuring polyunsaturated lipids integrity (PubMed:23837879). {ECO:0000269|PubMed:19674405, ECO:0000269|PubMed:23837879}. ARA:GQT-266-MONOMER; 39116 Chloroplastic lipocalin (AtCHL) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid lumen [GO:0031977]; nutrient reservoir activity [GO:0045735]; lipid metabolic process [GO:0006629]; negative regulation of fatty acid oxidation [GO:0046322]; response to abscisic acid [GO:0009737]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to oxidative stress [GO:0006979]; response to paraquat [GO:1901562]; response to water deprivation [GO:0009414]; seed maturation [GO:0010431] TISSUE SPECIFICITY: Expressed in leaves at low levels (at protein levels) (PubMed:23837879). Present in seeds (PubMed:23837879). {ECO:0000269|PubMed:23837879}. locus:2100407; AT3G47860 lipocalin Os04g0626400 protein,Os04g0626400 protein (Fragment) B9FCM4,A0A0P0WF08 B9FCM4_ORYSJ,A0A0P0WF08_ORYSJ Os04g0626400 OsJ_16247 OSNPB_040626400,Os04g0626400 OSNPB_040626400 ENOG411DVH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNAj (Hsp40) homolog subfamily B member AHM1(AT hook-containing MAR binding protein1)-like protein (Os07g0620200 protein) Q8L4D3 Q8L4D3_ORYSJ P0560B08.129 P0594D10.111 Os07g0620200 OsJ_25155 OSNPB_070620200 ENOG411DVH4 MQM1.23 Q1ECD6,A0A1P8BDY6,F4KCX5,A0A1P8BDX3,A0A1P8B9Z1,A0A1P8BE02,A0A1P8BED8,F4KB25,F4KB24,F4KCX6 Q1ECD6_ARATH,A0A1P8BDY6_ARATH,F4KCX5_ARATH,A0A1P8BDX3_ARATH,A0A1P8B9Z1_ARATH,A0A1P8BE02_ARATH,A0A1P8BED8_ARATH,F4KB25_ARATH,F4KB24_ARATH,F4KCX6_ARATH At5g23510,Uncharacterized protein,Transmembrane protein 30062,77331,81116,82048,85786,62603,29442,80562,80474,33768 At5g23510,Uncharacterized protein,Transmembrane protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2154468;,locus:2150743;,locus:2171656; AT5G23510,AT5G23490,AT5G08440 NA Os01g0108000 protein,Os05g0100900 protein (cDNA, clone: J075094N10, full insert sequence) Q657X5,B7F963 Q657X5_ORYSJ,B7F963_ORYSJ Os01g0108000 OSNPB_010108000 P0005A05.37 P0482C06.15,Os05g0100900 OsJ_16771 OSNPB_050100900 ENOG411DVH5 MED16,SFR6 F4JGZ1,A0A1P8B6J9 MED16_ARATH,A0A1P8B6J9_ARATH Mediator of RNA polymerase II transcription subunit 16 (Protein SENSITIVE TO FREEZING 6),Sensitive to freezing 6 DISRUPTION PHENOTYPE: Late flowering in long days. Very low expression of cold-responsive (COR) genes. {ECO:0000269|PubMed:19067974}. Impaired cold acclimation. FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the regulation of the circadian clock, in the control of flowering time, in freezing- and osmotic-stress tolerance and in both salicylic acid- and jasmonate-mediated defense gene expression. {ECO:0000269|PubMed:12753580, ECO:0000269|PubMed:18614706, ECO:0000269|PubMed:19067974, ECO:0000269|PubMed:22494141}. 138187,137052 Mediator of RNA polymerase II transcription subunit 16 (Protein SENSITIVE TO FREEZING 6),Sensitive to freezing 6 mediator complex [GO:0016592]; nucleus [GO:0005634]; circadian regulation of gene expression [GO:0032922]; positive regulation of systemic acquired resistance [GO:1901672]; regulation of cell wall pectin metabolic process [GO:1902066]; regulation of ethylene-activated signaling pathway [GO:0010104]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of long-day photoperiodism, flowering [GO:0048586]; regulation of plant-type cell wall cellulose biosynthetic process [GO:2001009]; regulation of transcription, DNA-templated [GO:0006355]; response to osmotic stress [GO:0006970]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] locus:2135383; AT4G04920 NA Expressed protein (Os10g0498700 protein),Os10g0498700 protein (Fragment) Q7G2F7,A0A0P0XWG2 Q7G2F7_ORYSJ,A0A0P0XWG2_ORYSJ LOC_Os10g35560 Os10g0498700 OSNPB_100498700,Os10g0498700 OSNPB_100498700 ENOG411DVH2 Q5PP51,F4JF35 Q5PP51_ARATH,F4JF35_ARATH At3g44160 (Outer membrane OMP85 family protein),Outer membrane OMP85 family protein 39010,34930 At3g44160 (Outer membrane OMP85 family protein),Outer membrane OMP85 family protein chloroplast [GO:0009507]; chloroplast outer membrane [GO:0009707]; channel activity [GO:0015267],outer membrane [GO:0019867] locus:2081423;,locus:2114485; AT3G44160,AT3G48620 outer envelope protein of 80 kDa Os05g0510200 protein (cDNA clone:002-107-B04, full insert sequence) Q6L543 Q6L543_ORYSJ Os05g0510200 OJ1005_B11.2 OSNPB_050510200 ENOG411DVH3 SLT1,FYD O80926,Q9LHA9,Q3EBL0 O80926_ARATH,Q9LHA9_ARATH,Q3EBL0_ARATH Expressed protein (HSP20-like chaperones superfamily protein) (SLT1 protein) (Uncharacterized protein At2g37570) (Uncharacterized protein At2g37570; F13M22.7),FYD (Uncharacterized protein At3g12570) (Uncharacterized protein T2E22.12),HSP20-like chaperones superfamily protein 55824,55277,39844 Expressed protein (HSP20-like chaperones superfamily protein) (SLT1 protein) (Uncharacterized protein At2g37570) (Uncharacterized protein At2g37570; F13M22.7),FYD (Uncharacterized protein At3g12570) (Uncharacterized protein T2E22.12),HSP20-like chaperones superfamily protein hyperosmotic salinity response [GO:0042538],chloroplast envelope [GO:0009941] locus:2040721;,locus:2101227; AT2G37570,AT3G12570 SLT1 protein Os01g0151100 protein (Sodium-lithium tolerant 2) (cDNA clone:J023009J05, full insert sequence),Os03g0277100 protein (Fragment) Q5ZEI0,Q0DT06 Q5ZEI0_ORYSJ,Q0DT06_ORYSJ SLT2 Os01g0151100 OSNPB_010151100 P0009G03.17,Os03g0277100 OSNPB_030277100 ENOG411DVH0 petB P56773 CYB6_ARATH Cytochrome b6 FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. {ECO:0000255|HAMAP-Rule:MF_00633}. MISCELLANEOUS: Heme 1 (or BH or b566) is high-potential and absorbs at about 566 nm, and heme 2 (or BL or b562) is low-potential and absorbs at about 562 nm. {ECO:0000255|HAMAP-Rule:MF_00633}. ARA:GQT-2101-MONOMER; 24153 Cytochrome b6 chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; thylakoid [GO:0009579]; electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity [GO:0045158]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; photosynthesis [GO:0015979]; respiratory electron transport chain [GO:0022904] locus:504954695; ATCG00720 Component of the cytochrome b6-f complex which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) cyclic electron flow around PSI and state transitions Cytochrome b6 P12123 CYB6_ORYSJ petB FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. {ECO:0000255|HAMAP-Rule:MF_00633}. MISCELLANEOUS: Heme 1 (or BH or b566) is high-potential and absorbs at about 566 nm, and heme 2 (or BL or b562) is low-potential and absorbs at about 562 nm. {ECO:0000255|HAMAP-Rule:MF_00633}. ENOG411DVH1 SPA4,SPA1,SPA2,SPA3 Q94BM7,Q9SYX2,Q9T014,Q9LJR3,A0A1I9LSW4,A0A1P8ARD3,A0A1P8AR67 SPA4_ARATH,SPA1_ARATH,SPA2_ARATH,SPA3_ARATH,A0A1I9LSW4_ARATH,A0A1P8ARD3_ARATH,A0A1P8AR67_ARATH Protein SPA1-RELATED 4,Protein SUPPRESSOR OF PHYA-105 1 (EC 2.7.-.-),Protein SPA1-RELATED 2,Protein SPA1-RELATED 3,SPA1-related 3,SPA1-related 4 DISRUPTION PHENOTYPE: Reduced hypocotyl elongation in blue light. {ECO:0000269|PubMed:21511871}. spa1 mutants flower early in short day but not in long day. Sensitive to continuous far-red light-P. Quail-1999 FUNCTION: Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex. {ECO:0000269|PubMed:12887588, ECO:0000269|PubMed:16813571, ECO:0000269|PubMed:16854975}.,FUNCTION: Controls normal photoperiodic flowering and regulates circadian rhythms. Required for suppression of photomorphogenesis in dark-grown seedlings and for normal elongation growth of adult plants. Integral component of the COP1/SPA E3 ubiquitin-protein ligase complex. Involved in HY5, HFR1, LAF1 and CO degradation. {ECO:0000269|PubMed:11457980, ECO:0000269|PubMed:12244439, ECO:0000269|PubMed:12827204, ECO:0000269|PubMed:15308756, ECO:0000269|PubMed:16709190, ECO:0000269|PubMed:16813571, ECO:0000269|PubMed:16854975, ECO:0000269|PubMed:21514160}.,FUNCTION: Involved in suppression of photomorphogenesis in dark-grown seedlings. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex. {ECO:0000269|PubMed:15308756, ECO:0000269|PubMed:16813571, ECO:0000269|PubMed:16854975}. R-ATH-349425;R-ATH-8951664; 2.7.-.- 89071,114686,115006,94354,66375,69844,64438 Protein SPA1-RELATED 4,Protein SUPPRESSOR OF PHYA-105 1 (EC 2.7.-.-),Protein SPA1-RELATED 2,Protein SPA1-RELATED 3,SPA1-related 3,SPA1-related 4 Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; protein kinase activity [GO:0004672]; red, far-red light phototransduction [GO:0009585]; response to blue light [GO:0009637],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nuclear body [GO:0016604]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; PML body [GO:0016605]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; protein kinase activity [GO:0004672]; chloroplast organization [GO:0009658]; negative regulation of photomorphogenesis [GO:0010100]; photomorphogenesis [GO:0009640]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; regulation of photoperiodism, flowering [GO:2000028]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114]; short-day photoperiodism, flowering [GO:0048575],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; red, far-red light phototransduction [GO:0009585],nucleus [GO:0005634]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; protein kinase activity [GO:0004672]; red, far-red light phototransduction [GO:0009585],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2037005;,locus:2039139;,locus:2136133; AT1G53090,AT2G46340,AT4G11110,AT3G15354 Protein SUPPRESSOR OF PHYA-105 Cop1 protein-like (Os01g0725800 protein) (cDNA clone:J033076N16, full insert sequence),Os05g0571000 protein,Os12g0558133 protein (Fragment),Os05g0571000 protein (Fragment) Q5JM56,Q65XL7,A0A0N7KU73,A0A0N7KL99 Q5JM56_ORYSJ,Q65XL7_ORYSJ,A0A0N7KU73_ORYSJ,A0A0N7KL99_ORYSJ Os01g0725800 Os01g0725800 OSNPB_010725800 P0042A10.14,Os05g0571000 Os05g0571000 OJ1735_C10.1 OsJ_19610 OSNPB_050571000,Os12g0558133 OSNPB_120558133,Os05g0571000 OSNPB_050571000 ENOG411DVH8 AGD11 Q8L7A4,A0A1I9LMK1 AGD11_ARATH,A0A1I9LMK1_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 (ARF GAP AGD11) (Protein ARF-GAP DOMAIN 11) (AtAGD11),Calcium-dependent ARF-type GTPase activating protein family FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). {ECO:0000250}. 42912,30125 Probable ADP-ribosylation factor GTPase-activating protein AGD11 (ARF GAP AGD11) (Protein ARF-GAP DOMAIN 11) (AtAGD11),Calcium-dependent ARF-type GTPase activating protein family GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872] locus:2077367; AT3G07940 ADP-ribosylation factor GTPase-activating protein Os01g0951100 protein (Zinc finger protein-like),Os05g0382000 protein (Putative zinc finger protein) (cDNA clone:J023087N07, full insert sequence) (cDNA clone:J023140B02, full insert sequence) Q8RZA2,Q6L4C8 Q8RZA2_ORYSJ,Q6L4C8_ORYSJ Os01g0951100 B1147A04.36 OsJ_04773 OSNPB_010951100,Os05g0382000 Os05g0382000 OsJ_18367 OSJNBa0088M05.12 OSNPB_050382000 ENOG411DVHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain-containing protein NA NA NA NA NA NA NA ENOG411DVHT ATG9 Q8RUS5 ATG9_ARATH Autophagy-related protein 9 (AtAPG9) DISRUPTION PHENOTYPE: Mutant plants are hypersensitive to nitrogen or carbon starvation and show early bolting senescence. {ECO:0000269|PubMed:12114572}. Early chlorosis and reduced fertility under nitrogen starvation-Y. Ohsumi-2002 FUNCTION: Required for autophagy that plays an essential role in plant nutrient recycling (PubMed:12114572). Contributes to efficient autophagic flux, especially in early autophagic process prior to the fusion of the autophagosome with the vacuole (PubMed:24805779). {ECO:0000269|PubMed:12114572, ECO:0000269|PubMed:24805779}. R-ATH-1632852; 99467 Autophagy-related protein 9 (AtAPG9) autophagosome [GO:0005776]; autophagosome membrane [GO:0000421]; cytoplasmic vesicle [GO:0031410]; integral component of membrane [GO:0016021]; pre-autophagosomal structure [GO:0000407]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; defense response to fungus [GO:0050832]; late nucleophagy [GO:0044805]; protein localization to pre-autophagosomal structure [GO:0034497]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12114572}. locus:2042531; AT2G31260 autophagy protein Autophagy-related protein 9 Q10P42,Q10A37,A0A0P0VVK0 Q10P42_ORYSJ,Q10A37_ORYSJ,A0A0P0VVK0_ORYSJ LOC_Os03g14380 Os03g0248000 OSNPB_030248000,Os10g0163100 LOC_Os10g07994 OSNPB_100163100,Os03g0248000 OSNPB_030248000 FUNCTION: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. {ECO:0000256|RuleBase:RU364027}. ENOG411DVHU MUA22.12,F1C9.29 Q9FMT8,Q9S7R2,A0A1I9LQZ4,F4JD50 Q9FMT8_ARATH,Q9S7R2_ARATH,A0A1I9LQZ4_ARATH,F4JD50_ARATH Major facilitator superfamily protein (Nodulin-like protein),F1C9.29 protein (F28J7.26 protein) (Major facilitator superfamily protein) (Uncharacterized protein At3g01930),Major facilitator superfamily protein 63149,63517,47564,51127 Major facilitator superfamily protein (Nodulin-like protein),F1C9.29 protein (F28J7.26 protein) (Major facilitator superfamily protein) (Uncharacterized protein At3g01930),Major facilitator superfamily protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773],integral component of membrane [GO:0016021] locus:2174683;,locus:2078643; AT5G14120,AT3G01930 Nodulin-like Nodulin-related protein-like (Os08g0532400 protein) (cDNA clone:J033052A20, full insert sequence) Q6YZD9 Q6YZD9_ORYSJ Os08g0532400 OsJ_28062 OSNPB_080532400 P0702E04.19 ENOG411DVHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0048E02.14 protein (Os04g0465800 protein) (cDNA clone:002-116-G12, full insert sequence),Os04g0465800 protein (cDNA clone:002-129-D10, full insert sequence) Q7XUY4,Q0JCJ5 Q7XUY4_ORYSJ,Q0JCJ5_ORYSJ Os04g0465800 OsJ_15105 OSJNBb0048E02.14 OSNPB_040465800,Os04g0465800 Os04g0465800 OSNPB_040465800 ENOG411DVHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os11g0495950 protein (Reticuline oxidase, putative) Q2R3Y8 Q2R3Y8_ORYSJ Os11g0495950 LOC_Os11g30310 Os11g0495950 OSNPB_110495950 ENOG411DVHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os07g0603800 protein (Putative peptide transporter),Os07g0603800 protein (Fragment) Q6YVW2,A0A0P0X919 Q6YVW2_ORYSJ,A0A0P0X919_ORYSJ Os07g0603800 Os07g0603800 OSJNBb0039M16.33 OSJNBb0040H10.6 OSNPB_070603800,Os07g0603800 OSNPB_070603800 ENOG411DVHY APC7 Q8VY89 APC7_ARATH Anaphase-promoting complex subunit 7 (Cyclosome subunit 7) FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-174184; 62346 Anaphase-promoting complex subunit 7 (Cyclosome subunit 7) nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein ubiquitination [GO:0016567] locus:2065011; AT2G39090 anaphase-promoting complex subunit Os05g0149900 protein (cDNA clone:J033025D11, full insert sequence),Os05g0149900 protein (Fragment) Q65XE1,A0A0P0WI87,A0A0P0WHZ6 Q65XE1_ORYSJ,A0A0P0WI87_ORYSJ,A0A0P0WHZ6_ORYSJ Os05g0149900 OJ1504_G04.13 OsJ_17134 OSNPB_050149900,Os05g0149900 OSNPB_050149900 ENOG411DVHF RAV2,RAV1,ARF14,TEM1 P82280,Q9ZWM9,Q9LS06,Q9C6M5 RAV2_ARATH,RAV1_ARATH,RAVL4_ARATH,RAVL1_ARATH AP2/ERF and B3 domain-containing transcription repressor RAV2 (Ethylene-responsive transcription factor RAV2) (Protein RELATED TO ABI3/VP1 2) (Protein RELATED TO APETALA2 8) (Protein TEMPRANILLO 2),AP2/ERF and B3 domain-containing transcription factor RAV1 (Ethylene-responsive transcription factor RAV1) (Protein RELATED TO ABI3/VP1 1),AP2/ERF and B3 domain-containing transcription factor ARF14 (Protein AUXIN RESPONSE FACTOR 14) (RAV1-like ethylene-responsive transcription factor ARF14),AP2/ERF and B3 domain-containing transcription repressor TEM1 (Protein TEMPRANILLO 1) (RAV1-like ethylene-responsive transcription factor TEM1) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.,FUNCTION: Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.,FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.,FUNCTION: Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. 39493,38597,37756,40558 AP2/ERF and B3 domain-containing transcription repressor RAV2 (Ethylene-responsive transcription factor RAV2) (Protein RELATED TO ABI3/VP1 2) (Protein RELATED TO APETALA2 8) (Protein TEMPRANILLO 2),AP2/ERF and B3 domain-containing transcription factor RAV1 (Ethylene-responsive transcription factor RAV1) (Protein RELATED TO ABI3/VP1 1),AP2/ERF and B3 domain-containing transcription factor ARF14 (Protein AUXIN RESPONSE FACTOR 14) (RAV1-like ethylene-responsive transcription factor ARF14),AP2/ERF and B3 domain-containing transcription repressor TEM1 (Protein TEMPRANILLO 1) (RAV1-like ethylene-responsive transcription factor TEM1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; lateral root development [GO:0048527]; leaf development [GO:0048366]; negative regulation of flower development [GO:0009910]; negative regulation of transcription, DNA-templated [GO:0045892]; response to brassinosteroid [GO:0009741]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; photoperiodism, flowering [GO:0048573]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}.,TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. locus:2012438;,locus:2205319;,locus:2085969;,locus:2031185; AT1G68840,AT1G13260,AT3G25730,AT1G25560 AP2 ERF and B3 domain-containing AP2/ERF and B3 domain-containing protein Os05g0549800,B3 domain-containing protein Os02g0455800,AP2/ERF and B3 domain-containing protein Os01g0693400,Os05g0549800 protein (Fragment),Os02g0764100 protein (Fragment) Q6L4H4,Q6K3B2,Q8RZX9,A0A0P0WPQ8,A0A0P0VQ12 Y5498_ORYSJ,Y2558_ORYSJ,Y1934_ORYSJ,A0A0P0WPQ8_ORYSJ,A0A0P0VQ12_ORYSJ Os05g0549800 LOC_Os05g47650 P0560C03.2,Os02g0455800 LOC_Os02g25820 OsJ_06608 OSJNBa0008C07.35 OSJNBa0063K04.11,Os01g0693400 LOC_Os01g49830 P0034C09.44,Os05g0549800 OSNPB_050549800,Os02g0764100 OSNPB_020764100 ENOG411DVHD Q9LHA3,A0A1I9LQC2 Q9LHA3_ARATH,A0A1I9LQC2_ARATH Transmembrane protein 76474,81861 Transmembrane protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2098423; AT3G28720 NA Os06g0584200 protein (Os06g0585200 protein),Os06g0584200 protein (cDNA clone:J013154A14, full insert sequence) Q5VP90,Q5VP89 Q5VP90_ORYSJ,Q5VP89_ORYSJ P0498C03.39-2 Os06g0584200 Os06g0585200 OsJ_21804 OSNPB_060584200,P0498C03.39-1 Os06g0584200 OSNPB_060584200 ENOG411DVHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein OSJNBa0019D11.15 protein (Os04g0520900 protein) (cDNA clone:J013164F23, full insert sequence),Os04g0520900 protein (Fragment) Q7XUA5,A0A0P0WCI7 Q7XUA5_ORYSJ,A0A0P0WCI7_ORYSJ Os04g0520900 OsJ_15488 OSJNBa0019D11.15 OSNPB_040520900,Os04g0520900 OSNPB_040520900 ENOG411DVHB ULP1D,ULP2A,ULP1C,ULP2B,OTS2 Q2PS26,Q0WKV8,Q8RWN0,Q8L7S0,A0A1P8ATS5,A0A1P8B1I0,F4I133 ULP1D_ARATH,ULP2A_ARATH,ULP1C_ARATH,ULP2B_ARATH,A0A1P8ATS5_ARATH,A0A1P8B1I0_ARATH,F4I133_ARATH Ubiquitin-like-specific protease 1D (EC 3.4.22.68) (Protein OVERLY TOLERANT TO SALT 1),Probable ubiquitin-like-specific protease 2A (EC 3.4.22.68),Ubiquitin-like-specific protease 1C (EC 3.4.22.68) (Protein OVERLY TOLERANT TO SALT 2),Probable ubiquitin-like-specific protease 2B (EC 3.4.22.68),Cysteine proteinases superfamily protein,Ulp1 protease family, carboxy-terminal catalytic domain protein DISRUPTION PHENOTYPE: No visible phenotype in terms of overall growth, salt sensitivity and flowering time. Early flowering time and salt sensitivity in ulp1d/ots1 and ulp1c/ots2 double mutants. {ECO:0000269|PubMed:18849491}. ots1-1 mutants flower at the same time as wild-type plants when grown under long day conditions and appear phenotypically normal. However there are abnormal phenotypes associated with the ots1-1 ots1-2 double mutant.,The ots1-1 ots2-1 double mutant plants flower earlier than wild type plants under long days and short days. They do not differ notably from wild type plants with respect to their overall growth rate inflorescence structure or seedling primary root elongation rate. But they are hypersensitive to salt based on root elongation assays. They also have a higher level of SUMOylated proteins than wild type seedlings exposed to salt stress.,ots2-1 mutants flower at the same time as wild-type plants when grown under long day conditions and appear phenotypically normal. However there are abnormal phenotypes associated with the ots1-1 ots1-2 double mutant. FUNCTION: Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1C. {ECO:0000269|PubMed:16740136, ECO:0000269|PubMed:16920872, ECO:0000269|PubMed:18849491}.,FUNCTION: Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. {ECO:0000250}.,FUNCTION: Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1D. {ECO:0000269|PubMed:16740136, ECO:0000269|PubMed:16920872, ECO:0000269|PubMed:18849491}. 3.4.22.68 67191,87796,66079,106013,50775,17087,109645 Ubiquitin-like-specific protease 1D (EC 3.4.22.68) (Protein OVERLY TOLERANT TO SALT 1),Probable ubiquitin-like-specific protease 2A (EC 3.4.22.68),Ubiquitin-like-specific protease 1C (EC 3.4.22.68) (Protein OVERLY TOLERANT TO SALT 2),Probable ubiquitin-like-specific protease 2B (EC 3.4.22.68),Cysteine proteinases superfamily protein,Ulp1 protease family, carboxy-terminal catalytic domain protein nuclear speck [GO:0016607]; nucleus [GO:0005634]; endopeptidase activity [GO:0004175]; SUMO-specific protease activity [GO:0016929]; protein desumoylation [GO:0016926]; response to salt stress [GO:0009651]; vegetative to reproductive phase transition of meristem [GO:0010228],SUMO-specific protease activity [GO:0016929]; protein desumoylation [GO:0016926],nucleoplasm [GO:0005654]; nucleus [GO:0005634]; endopeptidase activity [GO:0004175]; SUMO-specific protease activity [GO:0016929]; protein desumoylation [GO:0016926]; response to salt stress [GO:0009651]; vegetative to reproductive phase transition of meristem [GO:0010228],cysteine-type peptidase activity [GO:0008234],nucleus [GO:0005634]; SUMO-specific endopeptidase activity [GO:0070139]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; positive regulation of short-day photoperiodism, flowering [GO:0048576]; protein sumoylation [GO:0016925] locus:2195598;,locus:2194574;,locus:2024281; AT1G60220,AT4G33620,AT1G10570,AT1G09730 protease Os06g0487900 protein (Ulp1 protease-like) (cDNA clone:002-107-F11, full insert sequence),Os01g0738100 protein,Os05g0207900 protein (Fragment) Q67VX6,A0A0P0V7Z8,A0A0P0WJ60,A0A0P0WJ34 Q67VX6_ORYSJ,A0A0P0V7Z8_ORYSJ,A0A0P0WJ60_ORYSJ,A0A0P0WJ34_ORYSJ P0583E12.4-1 Os06g0487900 OSNPB_060487900,Os01g0738100 OSNPB_010738100,Os05g0207900 OSNPB_050207900 ENOG411DVHC Q9ZVQ5 Q9ZVQ5_ARATH At2g02370/T16F16.16 (Expressed protein) (SNARE associated Golgi protein family) 36594 At2g02370/T16F16.16 (Expressed protein) (SNARE associated Golgi protein family) integral component of membrane [GO:0016021] locus:2056246; AT2G02370 SNARE associated Golgi protein Expressed protein (Os03g0374400 protein) Q10KR0 Q10KR0_ORYSJ Os03g0374400 LOC_Os03g25750 Os03g0374400 OsJ_11023 OSNPB_030374400 ENOG411DVHA Q680K2 GPPL1_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 (EC 3.1.3.-) 3.1.3.- 34655 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 (EC 3.1.3.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; metabolic process [GO:0008152] locus:2140050; AT4G39970 haloacid dehalogenase-like hydrolase family protein Os08g0485900 protein (Putative CfxY protein) Q6ZDS0 Q6ZDS0_ORYSJ Os08g0485900 Os08g0485900 OsJ_27727 OSNPB_080485900 P0481F05.14 ENOG411E6H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os02g0143300 protein A0A0P0VER5 A0A0P0VER5_ORYSJ Os02g0143300 OSNPB_020143300 ENOG411E6H8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C NA NA NA NA NA NA NA ENOG411E6H1 Q9ZUX4 UMP2_ARATH Uncharacterized protein At2g27730, mitochondrial ARA:AT2G27730-MONOMER;MetaCyc:AT2G27730-MONOMER; 11948 Uncharacterized protein At2g27730, mitochondrial mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; respiratory chain complex I [GO:0045271]; vacuole [GO:0005773]; copper ion binding [GO:0005507]; photorespiration [GO:0009853] locus:2042001; AT2G27730 NA Os08g0559000 protein (Putative F1F0-ATPase inhibitor protein) (cDNA, clone: J080035F09, full insert sequence),Os09g0568900 protein (Fragment) Q6YZI4,A0A0P0XRR7 Q6YZI4_ORYSJ,A0A0P0XRR7_ORYSJ Os08g0559000 Os08g0559000 OSNPB_080559000 P0562A06.12,Os09g0568900 OSNPB_090568900 ENOG411E6H0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411E6H3 TIM8 Q9XGY4 TIM8_ARATH Mitochondrial import inner membrane translocase subunit TIM8 FUNCTION: Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex mediates the import of some proteins while the predominant TIM9-TIM10 70 kDa complex mediates the import of much more proteins (By similarity). {ECO:0000250}. 8750 Mitochondrial import inner membrane translocase subunit TIM8 mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2157931; AT5G50810 Mitochondrial import inner membrane translocase subunit Os08g0535600 protein (Putative small zinc finger-related protein) Q6Z1H2 Q6Z1H2_ORYSJ Os08g0535600 Os08g0535600 OsJ_28082 OSJNBa0033D24.21 OSNPB_080535600 P0665C04.2 ENOG411E6H2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E6H5 MIF2 Q9LJW5 MIF2_ARATH Mini zinc finger protein 2 (AtMIF2) FUNCTION: Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. 10793 Mini zinc finger protein 2 (AtMIF2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}. locus:1006230234; AT3G28917 ZF-HD homeobox protein At4g24660-like Mini zinc finger protein 4 (OsMIF4),Os08g0438100 protein (Fragment) Q0J5F8,A0A0P0XG26 MIF4_ORYSJ,A0A0P0XG26_ORYSJ MIF4 Os08g0438100 LOC_Os08g33990,Os08g0438100 OSNPB_080438100 FUNCTION: Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. ENOG411E6H4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os07g0475700 protein (cDNA clone:006-306-B11, full insert sequence) Q0D6I7 Q0D6I7_ORYSJ Os07g0475700 Os07g0475700 OSNPB_070475700 ENOG411E6H7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35EXOc NA NA NA NA NA NA NA ENOG411E6H6 PBP1,KRP1 Q9LSQ6,O81831 PBP1_ARATH,O81831_ARATH Calcium-binding protein PBP1 (KIC-related protein 2) (PINOID-binding protein 1),AT4g27280/M4I22_90 (Calcium-binding EF-hand family protein) (EF-hand Ca2+-binding protein CCD1) (KIC-related protein) (Uncharacterized protein AT4g27280) FUNCTION: Potential calcium sensor that binds calcium in vitro. {ECO:0000269|PubMed:14688294}. 14468,14503 Calcium-binding protein PBP1 (KIC-related protein 2) (PINOID-binding protein 1),AT4g27280/M4I22_90 (Calcium-binding EF-hand family protein) (EF-hand Ca2+-binding protein CCD1) (KIC-related protein) (Uncharacterized protein AT4g27280) calcium ion binding [GO:0005509]; response to auxin [GO:0009733],calcium ion binding [GO:0005509]; response to karrikin [GO:0080167] locus:2147294;,locus:2131759; AT5G54490,AT4G27280 pinoid-binding protein 1 NA NA NA NA NA NA NA ENOG411E6HY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: epidermal patterning factor-like protein NA NA NA NA NA NA NA ENOG411E6HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6HZ Q9FM08 Q9FM08_ARATH Uncharacterized protein At5g62860/MQB2_160 19312 Uncharacterized protein At5g62860/MQB2_160 locus:6530298250; AT5G62865 NA Os06g0233000 protein (Fragment) A0A0P0WUS8 A0A0P0WUS8_ORYSJ Os06g0233000 OSNPB_060233000 ENOG411E6HQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0793800 protein (cDNA clone:002-175-G02, full insert sequence) Q8S1L0 Q8S1L0_ORYSJ Os01g0793800 OsJ_03737 OSNPB_010793800 P0684C02.8 ENOG411E6HP Q9FJZ5 Q9FJZ5_ARATH Uncharacterized protein At5g66440 (tRNA-methyltransferase non-catalytic subunit trm6MTase subunit) 28716 Uncharacterized protein At5g66440 (tRNA-methyltransferase non-catalytic subunit trm6MTase subunit) integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2154860; AT5G66440 NA NA NA NA NA NA NA NA ENOG411E6HS PMEI4 Q9SB38 PMEI4_ARATH Pectinesterase inhibitor 4 (Pectin methylesterase inhibitor 4) (AtPMEI4) FUNCTION: Pectin methylesterase (PME) inhibitor that can target the root-expressed PME17, regulate de-methylesterification of pectins in roots and affects root growth. {ECO:0000269|PubMed:25826258}. 21897 Pectinesterase inhibitor 4 (Pectin methylesterase inhibitor 4) (AtPMEI4) apoplast [GO:0048046]; enzyme inhibitor activity [GO:0004857]; pectinesterase inhibitor activity [GO:0046910]; regulation of root development [GO:2000280] DEVELOPMENTAL STAGE: developmentally up-regulated in roots during growth acceleration of dark-grown hypocotyls. {ECO:0000269|PubMed:20819179}. TISSUE SPECIFICITY: Expressed in outer cell layer of roots, particularly in the root-hair zone (PubMed:25826258). Expressed in roots and siliques (PubMed:28034952). {ECO:0000269|PubMed:25826258, ECO:0000269|PubMed:28034952}. locus:2122699; AT4G25250 21 kDa protein-like NA NA NA NA NA NA NA ENOG411E6HR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0740600 protein (cDNA clone:002-135-A10, full insert sequence) Q6Z7S9 Q6Z7S9_ORYSJ Os02g0740600 OsJ_08326 OSNPB_020740600 P0516G10.15 ENOG411E6HU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA squamosa NA NA NA NA NA NA NA ENOG411E6HT LTP14 Q9FIT2 NLTPE_ARATH Putative non-specific lipid-transfer protein 14 (LTP 14) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 12854 Putative non-specific lipid-transfer protein 14 (LTP 14) membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:4010714066; AT5G62065 nonspecific lipid-transfer protein NA NA NA NA NA NA NA ENOG411E6HW Q0WSU0 Q0WSU0_ARATH Cytochrome c oxidase biogenesis protein Cmc1-like protein 9585 Cytochrome c oxidase biogenesis protein Cmc1-like protein mitochondrion [GO:0005739] locus:4010713896; AT4G21192 Cytochrome c oxidase biogenesis protein Cmc1 like COX assembly mitochondrial protein (Fragment) A0A0P0WAK1,A0A0P0VKD9 A0A0P0WAK1_ORYSJ,A0A0P0VKD9_ORYSJ Os04g0443801 OSNPB_040443801,Os02g0560450 OSNPB_020560450 ENOG411E6HV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HEAT repeat containing NA NA NA NA NA NA NA ENOG411E6HI IAA20 O24410,E1A7R2 IAA20_ARATH,E1A7R2_ARATH Auxin-responsive protein IAA20 (Indoleacetic acid-induced protein 20),Auxin-responsive protein (Fragment) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 19445,17207 Auxin-responsive protein IAA20 (Indoleacetic acid-induced protein 20),Auxin-responsive protein (Fragment) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; cotyledon vascular tissue pattern formation [GO:0010588]; gravitropism [GO:0009630]; response to auxin [GO:0009733]; root development [GO:0048364]; skotomorphogenesis [GO:0009647]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2041324; AT2G46990 auxin-responsive protein NA NA NA NA NA NA NA ENOG411E6HH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1442) Os08g0110600 protein A0A0P0XB13 A0A0P0XB13_ORYSJ Os08g0110600 OSNPB_080110600 ENOG411E6HK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0445700 protein,Os05g0379300 protein (Fragment),Os01g0500100 protein (Fragment) A0A0P0VIJ4,A0A0P0WLM7,A0A0P0V398 A0A0P0VIJ4_ORYSJ,A0A0P0WLM7_ORYSJ,A0A0P0V398_ORYSJ Os02g0445700 OSNPB_020445700,Os05g0379300 OSNPB_050379300,Os01g0500100 OSNPB_010500100 ENOG411E6HJ rps16 P56806 RR16_ARATH 30S ribosomal protein S16, chloroplastic 9155 30S ribosomal protein S16, chloroplastic chloroplast [GO:0009507]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954629; ATCG00050 30S ribosomal protein S16 chloroplastic 30S ribosomal protein S16, chloroplastic P12151 RR16_ORYSJ rps16 ENOG411E6HM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0584900 protein (WRKY transcription factor 28-like) (WRKY transcription factor 77) (WRKY5) (cDNA clone:002-144-B05, full insert sequence) Q94D50 Q94D50_ORYSJ WRKY77 Os01g0584900 OsJ_02377 OSJNBb0024F06.22 OSNPB_010584900 P0712E02.9 ENOG411E6HN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif CCT motif family protein (Os11g0101200 protein) (Os12g0101000 protein),Os12g0262400 protein,Os11g0101400 protein,Os12g0101200 protein Q2QYZ4,A0A0P0Y8R4,A0A0P0XY51,A0A0P0Y5X8 Q2QYZ4_ORYSJ,A0A0P0Y8R4_ORYSJ,A0A0P0XY51_ORYSJ,A0A0P0Y5X8_ORYSJ Os11g0101200 Os12g0101000 LOC_Os12g01080 OSNPB_110101200 OSNPB_120101000,Os12g0262400 OSNPB_120262400,Os11g0101400 OSNPB_110101400,Os12g0101200 OSNPB_120101200 ENOG411E6HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E6HC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os05g0579700 protein B9FLS2 B9FLS2_ORYSJ Os05g0579700 OsJ_19670 OSNPB_050579700 ENOG411E6HB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0266100 protein (cDNA clone:001-112-G10, full insert sequence) Q9LJ01 Q9LJ01_ORYSJ Os01g0266100 Os01g0266100 OSNPB_010266100 P0499C11.25 ENOG411E6HE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Os01g0775500 protein (Fragment) Q0JIV4 Q0JIV4_ORYSJ Os01g0775500 Os01g0775500 OSNPB_010775500 ENOG411E6HD ATL66 Q9SRM0 ATL66_ARATH RING-H2 finger protein ATL66 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL66) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 18090 RING-H2 finger protein ATL66 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL66) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2074678; AT3G11110 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E6HG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os07g0687400 protein,Os03g0319000 protein Q8LIG1,A0A0N7KH61 Q8LIG1_ORYSJ,A0A0N7KH61_ORYSJ OJ1200_C08.126 OJ1150_E04.122 Os07g0687400 OsJ_25645 OSNPB_070687400,Os03g0319000 OSNPB_030319000 ENOG411E6HF T10D17_70 Q9LXM0,A0A1I9LLD9 Q9LXM0_ARATH,A0A1I9LLD9_ARATH Peptidyl-prolyl cis-trans isomerase G (Uncharacterized protein At3g44280) (Uncharacterized protein At3g44280/T10D17_70) (Uncharacterized protein T10D17_70),Peptidyl-prolyl cis-trans isomerase G 12586,6901 Peptidyl-prolyl cis-trans isomerase G (Uncharacterized protein At3g44280) (Uncharacterized protein At3g44280/T10D17_70) (Uncharacterized protein T10D17_70),Peptidyl-prolyl cis-trans isomerase G isomerase activity [GO:0016853] locus:2095725; AT3G44280 NA Expressed protein (Os03g0836500 protein) (cDNA clone:J013134A19, full insert sequence) Q10AY8 Q10AY8_ORYSJ LOC_Os03g62030 Os03g0836500 OSNPB_030836500 ENOG411EA28 CKB1,CKB2 P40228,P40229,F4JP94,F4KIZ0,F4KIZ2,F4KIZ3 CSK2B_ARATH,CSK2C_ARATH,F4JP94_ARATH,F4KIZ0_ARATH,F4KIZ2_ARATH,F4KIZ3_ARATH Casein kinase II subunit beta-1 (CK II beta-1),Casein kinase II subunit beta-2 (CK II beta-2),Casein kinase II subunit beta (CK II beta) FUNCTION: Plays a complex role in regulating the basal catalytic activity of the alpha subunit. The tetrameric holoenzyme CK2, composed of two alpha and two beta subunits, phosphorylates the transcription factor GBFl, resulting in stimulation of its DNA binding activity (PubMed:7696877). CK2 phosphorylates the transcription factor PIF1 after an exposure to light, resulting in a proteasome-dependent degradation of PIF1 and promotion of photomorphogenesis (PubMed:21330376). CK2 phosphorylates translation initiation factors. May participate in the regulation of the initiation of translation (PubMed:19509278, PubMed:19509420). Stimulates the binding of CCA1 to promoters (Probable). {ECO:0000269|PubMed:19509278, ECO:0000269|PubMed:19509420, ECO:0000269|PubMed:21330376, ECO:0000269|PubMed:7696877, ECO:0000305|PubMed:9724822}.,FUNCTION: Plays a complex role in regulating the basal catalytic activity of the alpha subunit. The tetrameric holoenzyme CK2, composed of two alpha and two beta subunits, phosphorylates the transcription factor PIF1 after an exposure to light, resulting in a proteasome-dependent degradation of PIF1 and promotion of photomorphogenesis (PubMed:21330376). CK2 phosphorylates translation initiation factors. May participate in the regulation of the initiation of translation (PubMed:19509278). {ECO:0000269|PubMed:19509278, ECO:0000269|PubMed:21330376}.,FUNCTION: Plays a complex role in regulating the basal catalytic activity of the alpha subunit. {ECO:0000256|RuleBase:RU361268}. R-ATH-2514853;R-ATH-6798695;R-ATH-6804756; 32355,31978,31412,31789,28374,28705 Casein kinase II subunit beta-1 (CK II beta-1),Casein kinase II subunit beta-2 (CK II beta-2),Casein kinase II subunit beta (CK II beta) cytosol [GO:0005829]; nucleus [GO:0005634]; protein kinase CK2 complex [GO:0005956]; protein kinase regulator activity [GO:0019887]; protein phosphorylation [GO:0006468]; regulation of protein serine/threonine kinase activity [GO:0071900],cytosol [GO:0005829]; nucleus [GO:0005634]; protein kinase CK2 complex [GO:0005956]; protein kinase regulator activity [GO:0019887],protein kinase CK2 complex [GO:0005956]; kinase activity [GO:0016301]; protein kinase regulator activity [GO:0019887] locus:2152002;,locus:2129316; AT5G47080,AT4G17640 Casein kinase II regulatory subunit NA NA NA NA NA NA NA ENOG411EA29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EA2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EA2X MBD2.3,MMG4.5,MMN10.17,MMG4.3,MQK4.16,MMN10.19,F9K21.110,F17A9.15,F17A9.14,ULI3,MRA19.15 Q9FMN5,Q9FMI0,Q9FJE3,Q9LT63,Q9FMI1,Q9FMR6,Q9FFE2,Q9FJE2,Q9M1F4,Q9M8Z9,Q9M900,Q8W2D2,Q9LJJ0,Q2V4G4,Q9M138,A0A1I9LQN0,F4KEM1,A0A1P8BG71,A0A1I9LQN1,F4K343,F4IWJ3,F4JI14,Q3E937 Q9FMN5_ARATH,Q9FMI0_ARATH,Q9FJE3_ARATH,Q9LT63_ARATH,Q9FMI1_ARATH,Q9FMR6_ARATH,Q9FFE2_ARATH,Q9FJE2_ARATH,Q9M1F4_ARATH,Q9M8Z9_ARATH,Q9M900_ARATH,Q8W2D2_ARATH,Q9LJJ0_ARATH,Q2V4G4_ARATH,Q9M138_ARATH,A0A1I9LQN0_ARATH,F4KEM1_ARATH,A0A1P8BG71_ARATH,A0A1I9LQN1_ARATH,F4K343_ARATH,F4IWJ3_ARATH,F4JI14_ARATH,Q3E937_ARATH CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Ta11-like non-LTR retroelement protein-like),Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (Gb|AAF27003.1),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F9K21.110),At3g07000 (Cysteine/Histidine-rich C1 domain family protein) (F17A9.15 protein),Cysteine/Histidine-rich C1 domain family protein (F17A9.14 protein),Cysteine/Histidine-rich C1 domain family protein (ULI3),Cysteine/Histidine-rich C1 domain family protein (Ta11-like non-LTR retroelement protein-like CHP-rich zinc finger protein-like),CHP-rich zinc finger protein-like protein (Uncharacterized protein AT4g01340) Long hypocotyl under UV-B light-H. Frohnmeyer-2003 77148,62328,74888,77881,64596,76175,9605,72731,78508,66275,62108,79916,77061,39714,25646,64514,64322,70245,62258,67500,48775,74115,64496 CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Ta11-like non-LTR retroelement protein-like),Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (Gb|AAF27003.1),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F9K21.110),At3g07000 (Cysteine/Histidine-rich C1 domain family protein) (F17A9.15 protein),Cysteine/Histidine-rich C1 domain family protein (F17A9.14 protein),Cysteine/Histidine-rich C1 domain family protein (ULI3),Cysteine/Histidine-rich C1 domain family protein (Ta11-like non-LTR retroelement protein-like CHP-rich zinc finger protein-like),CHP-rich zinc finger protein-like protein (Uncharacterized protein AT4g01340) metal ion binding [GO:0046872],intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556],nucleus [GO:0005634]; histone binding [GO:0042393]; regulation of seed dormancy process [GO:2000033]; regulation of seed germination [GO:0010029],cytoplasm [GO:0005737]; diacylglycerol binding [GO:0019992]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556]; response to UV [GO:0009411]; response to UV-B [GO:0010224],intracellular [GO:0005622]; intracellular signal transduction [GO:0035556],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; intracellular signal transduction [GO:0035556],intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556]; response to chitin [GO:0010200] locus:2160011;,locus:2167801;,locus:2168123;,locus:2091473;,locus:2167791;,locus:504954854;,locus:2171367;,locus:2168138;,locus:2085597;,locus:2077612;,locus:2077602;,locus:2168108;,locus:2095477;,locus:1009023079;,locus:2125053;,locus:2172023;,locus:2125083;,locus:2179759; AT5G42840,AT5G43040,AT5G59930,AT3G27490,AT5G43030,AT5G22355,AT5G16430,AT5G59940,AT3G45530,AT3G07000,AT3G06990,AT5G59920,AT3G28650,AT1G58037,AT4G01340,AT5G45730,AT3G27480,AT4G01350,AT5G26190 cysteine histidine-rich C1 domain-containing protein NA NA NA NA NA NA NA ENOG411EA2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411EA2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mis12 protein NA NA NA NA NA NA NA ENOG411EA2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 NA NA NA NA NA NA NA ENOG411EA2E A0A1I9LT04 A0A1I9LT04_ARATH S-adenosylmethionine decarboxylase proenzyme R-ATH-351202; 14203 S-adenosylmethionine decarboxylase proenzyme adenosylmethionine decarboxylase activity [GO:0004014]; spermidine biosynthetic process [GO:0008295]; spermine biosynthetic process [GO:0006597] Adenosylmethionine decarboxylase NA NA NA NA NA NA NA ENOG411EA2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA2G RH34 Q9C8J1,A0A1P8ATK7,A0A1P8ATJ6,A0A1P8ATN0 RH34_ARATH,A0A1P8ATK7_ARATH,A0A1P8ATJ6_ARATH,A0A1P8ATN0_ARATH DEAD-box ATP-dependent RNA helicase 34 (AtRH34) (EC 3.6.4.13),DEA(D/H)-box RNA helicase family protein FUNCTION: ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). {ECO:0000250}. R-ATH-72163;R-ATH-975957; 3.6.4.13 44357,31143,33450,34272 DEAD-box ATP-dependent RNA helicase 34 (AtRH34) (EC 3.6.4.13),DEA(D/H)-box RNA helicase family protein catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; regulation of gene expression [GO:0010468]; RNA secondary structure unwinding [GO:0010501]; RNA splicing [GO:0008380]; rRNA processing [GO:0006364],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2008296; AT1G51380 DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411EA2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA R3H domain NA NA NA NA NA NA NA ENOG411EA2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase (DUF3321) NA NA NA NA NA NA NA ENOG411EA2C A0A1P8AMV6,F4HTY4,A0A1P8AMV7 A0A1P8AMV6_ARATH,F4HTY4_ARATH,A0A1P8AMV7_ARATH Envelope glycoprotein B 42947,59700,54661 Envelope glycoprotein B integral component of membrane [GO:0016021]; viral envelope [GO:0019031] locus:2198923; AT1G80540 NA NA NA NA NA NA NA NA ENOG411EA2M Q94AF9,Q93Z80,A8MQL4,F4J661,A0A1I9LTG5 EDL11_ARATH,EDL10_ARATH,A8MQL4_ARATH,F4J661_ARATH,A0A1I9LTG5_ARATH Sugar transporter ERD6-like 11,Sugar transporter ERD6-like 10,Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 51293,50299,44986,51642,56774 Sugar transporter ERD6-like 11,Sugar transporter ERD6-like 10,Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:505006329;,locus:2096234; AT3G05165,AT3G05160 sugar transporter NA NA NA NA NA NA NA ENOG411EA2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os03g0568400 protein A0A0P0VZB6 A0A0P0VZB6_ORYSJ Os03g0568400 OSNPB_030568400 ENOG411EA2H Q6E2A4,F4IB28,Q6E2A2,B3H6P0 Q6E2A4_ARATH,F4IB28_ARATH,Q6E2A2_ARATH,B3H6P0_ARATH Uncharacterized protein 50293,35538,32349,39233 Uncharacterized protein locus:2009854; AT1G43020 Protein of unknown function DUF547 NA NA NA NA NA NA NA ENOG411EA2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TSPc NA NA NA NA NA NA NA ENOG411EA2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EA2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411DXW5 AGL26 Q6NPL4 Q6NPL4_ARATH At5g26880 (Uncharacterized protein At5g26880) (tRNA (Cytidine(34)-2'-O)-methyltransferase) 28764 At5g26880 (Uncharacterized protein At5g26880) (tRNA (Cytidine(34)-2'-O)-methyltransferase) RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; cellular response to nitrogen starvation [GO:0006995]; RNA processing [GO:0006396] locus:2148488; AT5G26880 SpoU rRNA Methylase family Os08g0506500 protein A0A0P0XHQ7 A0A0P0XHQ7_ORYSJ Os08g0506500 OSNPB_080506500 ENOG411DXW4 TIC55 Q9SK50 TIC55_ARATH Protein TIC 55, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 55) (AtTIC55) (Translocon at the inner envelope membrane of chloroplasts 55-II) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19995737}. FUNCTION: Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. {ECO:0000269|PubMed:19995737}. ARA:AT2G24820-MONOMER; 60608 Protein TIC 55, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 55) (AtTIC55) (Translocon at the inner envelope membrane of chloroplasts 55-II) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; 2 iron, 2 sulfur cluster binding [GO:0051537]; chlorophyllide a oxygenase [overall] activity [GO:0010277]; metal ion binding [GO:0046872]; protein targeting to chloroplast [GO:0045036] TISSUE SPECIFICITY: Highly expressed in green tissues and very low levels in non-photosynthetic tissues such as roots and etiolated seedlings. {ECO:0000269|PubMed:15033972, ECO:0000269|PubMed:19995737}. locus:2047329; AT2G24820 pheophorbide a oxygenase Os02g0792800 protein (Putative Rieske iron-sulfur protein Tic55) (cDNA clone:001-200-B11, full insert sequence) (cDNA clone:J013170P20, full insert sequence) Q6K689 Q6K689_ORYSJ Os02g0792800 Os02g0792800 OJ1249_F12.25 OsJ_08688 OSNPB_020792800 P0700F06.13 ENOG411DXW7 O81769 DPH5_ARATH Probable diphthine methyl ester synthase (EC 2.1.1.314) (Diphthamide biosynthesis methyltransferase) FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase that catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester. The four successive methylation reactions represent the second step of diphthamide biosynthesis. {ECO:0000250|UniProtKB:P32469}. PATHWAY: Protein modification; peptidyl-diphthamide biosynthesis. ARA:AT4G31790-MONOMER; R-ATH-5358493; 2.1.1.314 30790 Probable diphthine methyl ester synthase (EC 2.1.1.314) (Diphthamide biosynthesis methyltransferase) diphthine synthase activity [GO:0004164]; peptidyl-diphthamide biosynthetic process from peptidyl-histidine [GO:0017183] locus:2124859; AT4G31790 S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF- 2) to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis (By similarity) Diphthine synthase, putative, expressed (Os03g0355800 protein) (cDNA clone:J033150L03, full insert sequence) Q10L98 Q10L98_ORYSJ Os03g0355800 LOC_Os03g23970 Os03g0355800 OSNPB_030355800 ENOG411DXW6 RH26,RH31 Q9FNM7,Q9FFQ1 RH26_ARATH,RH31_ARATH DEAD-box ATP-dependent RNA helicase 26 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 31 (EC 3.6.4.13) Pigment defective embryo-D. Meinke-2011 3.6.4.13 94186,81083 DEAD-box ATP-dependent RNA helicase 26 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 31 (EC 3.6.4.13) chloroplast [GO:0009507]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2159517;,locus:2160639; AT5G08610,AT5G63630 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 26 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 25 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 31 (EC 3.6.4.13),Os06g0526600 protein (Fragment) Q0JL73,Q5ZBH5,Q0DBU5,A0A0P0WXP4 RH26_ORYSJ,RH25_ORYSJ,RH31_ORYSJ,A0A0P0WXP4_ORYSJ Os01g0618500 LOC_Os01g43130 B1040D09.7 OsJ_02629,Os01g0618400 LOC_Os01g43120 B1040D09.6 OsJ_02628,Os06g0526600 LOC_Os06g33520 OSJNBa0043B22.23 P0001B01.3,Os06g0526600 OSNPB_060526600 ENOG411DXW1 LYK2 Q9SGI7 LYK2_ARATH Protein LYK2 (LysM domain receptor-like kinase 2) (LysM-containing receptor-like kinase 2) FUNCTION: May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands. {ECO:0000250}. 73162 Protein LYK2 (LysM domain receptor-like kinase 2) (LysM-containing receptor-like kinase 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2082359; AT3G01840 STYKc NA NA NA NA NA NA NA ENOG411DXW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os08g0551366 protein Q6Z3H5 Q6Z3H5_ORYSJ Os08g0551366 OsJ_28207 OSJNBb0011H15.12 OSNPB_080551366 ENOG411DXW3 NPF4.3,NPF4.4 Q93VV5,Q56XQ6 PTR16_ARATH,PTR15_ARATH Protein NRT1/ PTR FAMILY 4.3 (AtNPF4.3) (Nitrate transporter 1.14),Protein NRT1/ PTR FAMILY 4.4 (AtNPF4.4) (Nitrate transporter 1.13) 66042,66705 Protein NRT1/ PTR FAMILY 4.3 (AtNPF4.3) (Nitrate transporter 1.14),Protein NRT1/ PTR FAMILY 4.4 (AtNPF4.4) (Nitrate transporter 1.13) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in flowers. Detected in roots and siliques. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in shoots, roots and stems. {ECO:0000269|PubMed:17481610}. locus:2025886;,locus:2006907; AT1G59740,AT1G33440 Peptide nitrate transporter Nitrate transporter NTL1, putative, expressed (Os11g0235200 protein) (POT family, putative) (cDNA clone:J023121K14, full insert sequence),OSJNBa0064D20.8 protein (Os04g0441800 protein) (cDNA clone:J013000B16, full insert sequence) Q53JI5,Q7FA05 Q53JI5_ORYSJ,Q7FA05_ORYSJ Os11g0235200 LOC_Os11g12740 OSNPB_110235200,OSJNBa0064D20.8 Os04g0441800 OSNPB_040441800 ENOG411DXW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR repeat-containing thioredoxin NA NA NA NA NA NA NA ENOG411DXW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: finger protein Os03g0598700 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:002-137-A02, full insert sequence) Q10H77 Q10H77_ORYSJ Os03g0598700 LOC_Os03g40170 Os03g0598700 OsJ_11649 OSNPB_030598700 ENOG411DXW8 TBL36 Q940H3 TBL36_ARATH Protein trichome birefringence-like 36 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 44371 Protein trichome birefringence-like 36 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2080280; AT3G54260 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411DXWE SCL6 O81316 SCL6_ARATH Scarecrow-like protein 6 (AtSCL6) (GRAS family protein 22) (AtGRAS-22) (SCL6-IV) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 61168 Scarecrow-like protein 6 (AtSCL6) (GRAS family protein 22) (AtGRAS-22) (SCL6-IV) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; cell division [GO:0051301]; circadian rhythm [GO:0007623]; regulation of transcription, DNA-templated [GO:0006355]; root hair cell tip growth [GO:0048768]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. locus:2126901; AT4G00150 Scarecrow-like protein Os02g0663100 protein (Putative Scl1 protein) (cDNA clone:J023150P14, full insert sequence),Os02g0662700 protein (Scl1 protein),Os10g0551200 protein,OSJNBa0010H02.25 protein (OSJNBb0012E24.1 protein) (Os04g0555000 protein) Q6H6L0,Q6H6L3,Q0IVV5,Q6H6L2,Q7XT28 Q6H6L0_ORYSJ,Q6H6L3_ORYSJ,Q0IVV5_ORYSJ,Q6H6L2_ORYSJ,Q7XT28_ORYSJ Os02g0663100 Os02g0663100 OJ1001_D02.13 OsJ_07832 OSNPB_020663100 P0516F12.31,P0516F12.29-1 OJ1001_D02.11-1 Os02g0662700 OSNPB_020662700,Os10g0551200 OSNPB_100551200,P0516F12.29-2 OJ1001_D02.11-2 Os02g0662700 OSNPB_020662700,Os04g0555000 OSJNBa0010H02.25 OSJNBb0012E24.1 OSNPB_040555000 ENOG411DXWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc Putative protein phosphatase 2C 46 (OsPP2C46) (EC 3.1.3.16),Os05g0111800 protein (Fragment) A3AZ89,A0A0P0WH45 P2C46_ORYSJ,A0A0P0WH45_ORYSJ Os05g0111800 LOC_Os05g02110 OsJ_016111,Os05g0111800 OSNPB_050111800 ENOG411DXWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor NA NA NA NA NA NA NA ENOG411DXWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXWA IWS1 F4ICK8,F4ICK7 IWS1_ARATH,F4ICK7_ARATH Protein IWS1 homolog 1 (AtIWS1) (Interacts with SPT6 protein 1) (Protein HIGH NITROGEN INSENSITIVE 9) (Protein SUPPRESSOR OF BES-1-D 1),Transcription elongation factor (TFIIS) family protein DISRUPTION PHENOTYPE: Semi-dwarf phenotype. Stunted growth characterized by reduced leaf petiole lengths and small leaves. Altered responses to brassinosteroid (BR). {ECO:0000269|PubMed:20139304}. Semi-dwarf-Y. Yin-2010 FUNCTION: Transcription factor involved in RNA polymerase II (RNAPII) transcription regulation. Involved in transcription elongation. May function at post-recruitment and elongation steps of transcription. May be recruited by BZR2/BES1 to target genes and promote their expression during transcription elongation process. Required for brassinosteroid (BR)-induced gene expression (PubMed:20139304). Required the for regulation of numerous nitrogen-responsive genes in roots. Acts in roots to repress NRT2.1 transcription in response to high nitrogen supply. This repression is associated with an IWS1-dependent increase of trimethylation on 'Lys-27' H3K27me3 at the NRT2.1 locus (PubMed:21788519). {ECO:0000269|PubMed:20139304, ECO:0000269|PubMed:21788519}. 57425,56328 Protein IWS1 homolog 1 (AtIWS1) (Interacts with SPT6 protein 1) (Protein HIGH NITROGEN INSENSITIVE 9) (Protein SUPPRESSOR OF BES-1-D 1),Transcription elongation factor (TFIIS) family protein nucleus [GO:0005634]; brassinosteroid mediated signaling pathway [GO:0009742]; regulation of DNA-templated transcription, elongation [GO:0032784]; regulation of histone H3-K36 trimethylation [GO:2001253]; regulation of mRNA export from nucleus [GO:0010793]; regulation of mRNA processing [GO:0050684]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; translation elongation factor activity [GO:0003746] locus:2031715; AT1G32130 IWS1 C-terminus family protein Os01g0147200 protein Q5ZDL8,A0A0P0UYI5 Q5ZDL8_ORYSJ,A0A0P0UYI5_ORYSJ P0416D03.38-1 P0434B04.2-1 Os01g0147200 OSNPB_010147200,Os01g0147200 OSNPB_010147200 ENOG411DXWC ECHIA Q6NL24 ECH1P_ARATH Probable enoyl-CoA hydratase 1, peroxisomal (EC 4.2.1.17) (Enoyl-CoA hydratase isoform A) FUNCTION: Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate. {ECO:0000250|UniProtKB:P30084}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. {ECO:0000305}. ARA:AT4G16210-MONOMER; 4.2.1.17 28818 Probable enoyl-CoA hydratase 1, peroxisomal (EC 4.2.1.17) (Enoyl-CoA hydratase isoform A) peroxisome [GO:0005777]; enoyl-CoA hydratase activity [GO:0004300]; fatty acid beta-oxidation [GO:0006635] locus:2130265; AT4G16210 enoyl-CoA hydratase Enoyl-CoA hydratase/isomerase family protein, expressed (Os03g0310400 protein) Q10MF8 Q10MF8_ORYSJ LOC_Os03g19680 Os03g0310400 OsJ_10589 OSNPB_030310400 ENOG411DXWB F4F15.220 Q9SUZ4,F4J5R3,A0A1I9LMS6,A0A1I9LMS5 Q9SUZ4_ARATH,F4J5R3_ARATH,A0A1I9LMS6_ARATH,A0A1I9LMS5_ARATH At3g52110 (Interferon-activable protein) (Uncharacterized protein F4F15.220),Interferon-activable protein 41984,38821,30915,38427 At3g52110 (Interferon-activable protein) (Uncharacterized protein F4F15.220),Interferon-activable protein locus:2083730; AT3G52110 NA Expressed protein (Os03g0174200 protein) (cDNA clone:J033143G15, full insert sequence) Q10R20 Q10R20_ORYSJ Os03g0174200 LOC_Os03g07810 Os03g0174200 OsJ_09610 OSNPB_030174200 ENOG411DXWM SCPL30,SCPL31,scpl31 O23364,O04084,F4I7C9 SCP30_ARATH,SCP31_ARATH,F4I7C9_ARATH Putative serine carboxypeptidase-like 30 (EC 3.4.16.-),Serine carboxypeptidase-like 31 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 55259,55445,55839 Putative serine carboxypeptidase-like 30 (EC 3.4.16.-),Serine carboxypeptidase-like 31 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expression not detected.,TISSUE SPECIFICITY: Expressed in roots, senescent leaves, stems, flowers and siliques. {ECO:0000269|PubMed:15908604}. locus:2129675;,locus:2197384; AT4G15100,AT1G11080 serine carboxypeptidase-like NA NA NA NA NA NA NA ENOG411DXWN SMXL6,SMXL7,SMAX1-like 6 Q9LML2,O80875,Q8RWE4 SMXL6_ARATH,SMXL7_ARATH,Q8RWE4_ARATH Protein SMAX1-LIKE 6 (AtSMXL6) (Protein D53-like 2) (AtD53-like 2) (Protein D53-like SMXL 6),Protein SMAX1-LIKE 7 (AtSMXL7) (Protein D53-like 1) (AtD53-like 1) (Protein D53-like SMXL 7),At1g07200 (Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein) (Uncharacterized protein At1g07200) DISRUPTION PHENOTYPE: No visible phenotype. Suppresses max2 phenotypes associated with strigolactone-D14-regulated growth. Smxl6 and max2 double mutants have branching and inflorescence heights similar to max2 mutants. {ECO:0000269|PubMed:26546447}.,DISRUPTION PHENOTYPE: No visible phenotype. Suppresses max2 phenotypes associated with strigolactone-D14-regulated growth. Smxl7 and max2 double mutants have reduced branching and increased inflorescence heights compared with max2 mutants. {ECO:0000269|PubMed:26546447}. FUNCTION: Probable component of a transcriptional corepressor complex involved in branching control. Regulates cotyledon expansion and lateral root growth, but not germination or hypocotyl elongation. Promotes auxin transport and PIN1 accumulation in the stem and represses BRC1/TCP18 expression in axillary buds (PubMed:26546447, PubMed:26546446). {ECO:0000269|PubMed:26546446, ECO:0000269|PubMed:26546447}. 107806,111924,47042 Protein SMAX1-LIKE 6 (AtSMXL6) (Protein D53-like 2) (AtD53-like 2) (Protein D53-like SMXL 6),Protein SMAX1-LIKE 7 (AtSMXL7) (Protein D53-like 1) (AtD53-like 1) (Protein D53-like SMXL 7),At1g07200 (Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein) (Uncharacterized protein At1g07200) nucleus [GO:0005634]; protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; response to strigolactone [GO:1902347]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Detected in roots, seedlings and axillary branches (PubMed:23893171). Expressed in the primary rosette buds and expanding leaves of adult rosettes, the vasculature of the hypocotyls, cotyledons, and mature roots, and in the midvein and petioles of young leaves (PubMed:26546447). {ECO:0000269|PubMed:23893171, ECO:0000269|PubMed:26546447}.,TISSUE SPECIFICITY: Expressed in axillary branches and roots. Detected in seedlings and leaves (PubMed:23893171). Expressed in the primary rosette buds and expanding leaves of adult rosettes, the vasculature of the hypocotyls, cotyledons, and mature roots, and in the midvein and petioles of young leaves (PubMed:26546447). {ECO:0000269|PubMed:23893171, ECO:0000269|PubMed:26546447}. locus:2007412;,locus:2045653; AT1G07200,AT2G29970 expressed protein Protein DWARF 53-LIKE,Protein DWARF 53,Os09g0516400 protein,Os12g0104300 protein,Os11g0104350 protein (Fragment) Q2QYW5,Q2RBP2,Q69IL2,A0A0P0Y5W8,A0A0P0XXY3 D53L_ORYSJ,D53_ORYSJ,Q69IL2_ORYSJ,A0A0P0Y5W8_ORYSJ,A0A0P0XXY3_ORYSJ D53-L LOC_Os12g01360 Os12g0104300 OsJ_34905,D53 Os11g0104300 LOC_Os11g01330 OsJ_32651,Os09g0516400 OSJNBb0034B12.11 OSNPB_090516400 P0450E05.36,Os12g0104300 OSNPB_120104300,Os11g0104350 OSNPB_110104350 FUNCTION: Repressor of strigolactones (SL) signaling. Subjected to a negative feedback control of SL signaling. {ECO:0000250|UniProtKB:Q2RBP2}.,FUNCTION: Repressor of strigolactones (SL) signaling. Subjected to a negative feedback control of SL signaling. {ECO:0000269|PubMed:24336200, ECO:0000269|PubMed:24336215}. ENOG411DXWI emb2410 A0A1P8AYW3,F4ISL7 A0A1P8AYW3_ARATH,F4ISL7_ARATH Embryo defective 2410 Embryo defective; Globular-D. Meinke-2003 239077,240344 Embryo defective 2410 integral component of membrane [GO:0016021],apoplast [GO:0048046]; integral component of membrane [GO:0016021] locus:2050327; AT2G25660 Family of unknown function (DUF490) Os01g0179400 protein W0RYD3 W0RYD3_ORYSJ SSG4 Os01g0179400 OSNPB_010179400 ENOG411DXWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0922100 protein Q5JJH8 Q5JJH8_ORYSJ Os01g0922100 Os01g0922100 B1793G04.34 OSNPB_010922100 ENOG411DXWK PRA1F3,PRA1F2,PRA1F4 Q9LIC6,Q9C889,Q9LIC7 PR1F3_ARATH,PR1F2_ARATH,PR1F4_ARATH PRA1 family protein F3 (AtPRA1.F3) (Prenylated Rab acceptor 8),PRA1 family protein F2 (AtPRA1.F2) (Prenylated Rab acceptor 7),PRA1 family protein F4 (AtPRA1.F4) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000305|PubMed:18845362}. FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 21116,21072,21001 PRA1 family protein F3 (AtPRA1.F3) (Prenylated Rab acceptor 8),PRA1 family protein F2 (AtPRA1.F2) (Prenylated Rab acceptor 7),PRA1 family protein F4 (AtPRA1.F4) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in lateral roots, lateral root caps and columella cells. {ECO:0000269|PubMed:18583532}.,TISSUE SPECIFICITY: Expressed in hypocotyls and trichomes. {ECO:0000269|PubMed:18583532}. locus:2091556;,locus:2035701;,locus:2091541; AT3G13720,AT1G55190,AT3G13710 PRA1 family NA NA NA NA NA NA NA ENOG411DXWJ C0LGE0,C0LGG9,C0LGG8,A0A1P8APW9,F4HRH4,A0A1P8AQ09,F4HSE1 Y1765_ARATH,Y5344_ARATH,Y5343_ARATH,A0A1P8APW9_ARATH,F4HRH4_ARATH,A0A1P8AQ09_ARATH,F4HSE1_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07650 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g53440 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g53430 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase 2.7.11.1 112902,114851,114945,110027,110231,88912,113498 Probable LRR receptor-like serine/threonine-protein kinase At1g07650 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g53440 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g53430 (EC 2.7.11.1),Leucine-rich repeat transmembrane protein kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2203718;,locus:2026585; AT1G07650,AT1G53440,AT1G53430 LRR receptor-like serine threonine-protein kinase Disease resistance protein Cf-2.1-like (Os02g0232500 protein) (cDNA clone:J013041I15, full insert sequence) (cDNA clone:J033127G17, full insert sequence),Leucine-rich repeat family protein /protein kinase family protein-like (Os09g0345300 protein) Q6EUF7,Q6EQG8 Q6EUF7_ORYSJ,Q6EQG8_ORYSJ Os02g0232500 OJ1705_E12.28 OSNPB_020232500,OSJNBb0085I16.18 Os09g0345300 OSNPB_090345300 ENOG411DXWU T30N20_20 Q9LEW4,Q94AK1,F4KIL6,Q3E7D9 Q9LEW4_ARATH,Q94AK1_ARATH,F4KIL6_ARATH,Q3E7D9_ARATH At5g10750 (Enhanced disease resistance-like protein (DUF1336)) (Uncharacterized protein T30N20_20),Enhanced disease resistance-like protein (DUF1336) (Uncharacterized protein At5g24990),Enhanced disease resistance-like protein (DUF1336) 33021,32940,29739,31771 At5g10750 (Enhanced disease resistance-like protein (DUF1336)) (Uncharacterized protein T30N20_20),Enhanced disease resistance-like protein (DUF1336) (Uncharacterized protein At5g24990),Enhanced disease resistance-like protein (DUF1336) lipid binding [GO:0008289] locus:2183705;,locus:2149428;,locus:2179255;,locus:2179245; AT5G10750,AT5G24990,AT5G25020,AT5G25010 Protein of unknown function (DUF1336) Os06g0698500 protein (Fragment) Q0D9U3 Q0D9U3_ORYSJ Os06g0698500 Os06g0698500 OSNPB_060698500 ENOG411DXWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0577500 protein (cDNA clone:J023123D09, full insert sequence),Os07g0174700 protein Q6ZL96,Q8H577 Q6ZL96_ORYSJ,Q8H577_ORYSJ Os07g0577500 OJ1065_B06.18 OsJ_24860 OSNPB_070577500,OJ1656_E11.120 Os07g0174700 OsJ_10448 OSNPB_070174700 P0496D04.60 ENOG411DXWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q5Z6S3 Q5Z6S3_ORYSJ Os06g0262800 Os06g0262800 OSJNBa0037N01.9 OSNPB_060262800 P0031A09.28 ENOG411DXWS T10K17.200 Q9M2P9 Q9M2P9_ARATH Uncharacterized protein At3g57990 (Uncharacterized protein T10K17.200) 39892 Uncharacterized protein At3g57990 (Uncharacterized protein T10K17.200) glucose transmembrane transport [GO:1904659] locus:2095768; AT3G57990 NA Os08g0510800 protein (cDNA clone:001-206-D03, full insert sequence),Os09g0491676 protein (cDNA clone:J013000F19, full insert sequence),Os09g0278700 protein,Os06g0506400 protein Q84YJ5,B7EA34,Q6H5H8,A3BC58 Q84YJ5_ORYSJ,B7EA34_ORYSJ,Q6H5H8_ORYSJ,A3BC58_ORYSJ Os08g0510800 OSJNBa0016N23.125 OSNPB_080510800,Os09g0491676 OSNPB_090491676,Os09g0278700 OsJ_28649 OSNPB_090278700 P0701E06.24,Os06g0506400 OsJ_21489 OSNPB_060506400 ENOG411DXWR CHS P13114 CHSY_ARATH Chalcone synthase (EC 2.3.1.74) (Naringenin-chalcone synthase) (Protein TRANSPARENT TESTA 4) pale yellow seeds no flavonoid in tapetum cells Yellow seed coat-H. Goodman-2001 FUNCTION: The primary product of this enzyme is 4,2',4',6'-tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. MetaCyc:AT5G13930-MONOMER; 2.3.1.74; Biosynthesis of secondary metabolites (01110),Flavonoid biosynthesis (00941),Circadian rhythm - plant (04712),Metabolic pathways (01100) 2.3.1.74 43116 Chalcone synthase (EC 2.3.1.74) (Naringenin-chalcone synthase) (Protein TRANSPARENT TESTA 4) endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; plant-type vacuole membrane [GO:0009705]; naringenin-chalcone synthase activity [GO:0016210]; auxin polar transport [GO:0009926]; flavonoid biosynthetic process [GO:0009813]; regulation of anthocyanin biosynthetic process [GO:0031540]; response to auxin [GO:0009733]; response to gravity [GO:0009629]; response to jasmonic acid [GO:0009753]; response to oxidative stress [GO:0006979]; response to UV-B [GO:0010224]; response to wounding [GO:0009611] locus:2159098; AT5G13930 The primary product of this enzyme is 42'4'6'- tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin Chalcone synthase 2 (OsCHS2) (EC 2.3.1.74) (Naregenin-chalcone synthase),Chalcone synthase 1 (OsCHS1) (EC 2.3.1.74) (Naregenin-chalcone synthase) Q8H4L3,Q2R3A1 CHS2_ORYSJ,CHS1_ORYSJ CHS2 Os07g0214900 LOC_Os07g11440 OJ1116_C08.125,CHS1 CHS Os11g0530600 LOC_Os11g32650 OsJ_032788 FUNCTION: The primary product of this enzyme is 4,2',4',6'-tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin. {ECO:0000250}.,FUNCTION: The primary product of this enzyme is 4,2',4',6'-tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin. ENOG411DXWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Os01g0277500 protein (Fragment) A0A0P0V139 A0A0P0V139_ORYSJ Os01g0277500 OSNPB_010277500 ENOG411EF6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lsm interaction motif NA NA NA NA NA NA NA ENOG411E1CZ DYW9 Q9SUH6 PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 (Protein DYW9) 88777 Pentatricopeptide repeat-containing protein At4g30700 (Protein DYW9) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; cytidine to uridine editing [GO:0016554]; mitochondrial mRNA modification [GO:0080156]; mitochondrial RNA processing [GO:0000963] locus:2131939; AT4G30700 Pentatricopeptide repeat-containing protein Os06g0185800 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os03g0307900 protein (Fragment) Q5SMW7,A0A0P0VWI1 Q5SMW7_ORYSJ,A0A0P0VWI1_ORYSJ Os06g0185800 Os06g0185800 OsJ_20378 OSNPB_060185800 P0568D10.6,Os03g0307900 OSNPB_030307900 ENOG411E1CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os12g0252966 protein A0A0N7KTT9 A0A0N7KTT9_ORYSJ Os12g0252966 OSNPB_120252966 ENOG411E1CV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-responsive protein Auxin-responsive protein IAA10 (Indoleacetic acid-induced protein 10) Q0DWF2 IAA10_ORYSJ IAA10 Os02g0817600 LOC_Os02g57250 OJ1136_C12.16-1 OJ1136_C12.16-2 OsJ_08880 P0643F09.36-1 P0643F09.36-2 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411DW76 MXI22.13 Q9FK31 Q9FK31_ARATH At5g50410 (Ribonucleoside-diphosphate reductase subunit beta) 30131 At5g50410 (Ribonucleoside-diphosphate reductase subunit beta) locus:2177482; AT5G50410 NA Os08g0531200 protein A0A0P0XIE9 A0A0P0XIE9_ORYSJ Os08g0531200 OSNPB_080531200 ENOG411DW77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADP-ribosylation factor 1 NA NA NA NA NA NA NA ENOG411DW74 AAP7 Q9FF99,A0A1P8BC87,A0A1P8BC79 AAP7_ARATH,A0A1P8BC87_ARATH,A0A1P8BC79_ARATH Probable amino acid permease 7 (Amino acid transporter AAP7),Amino acid permease 7 FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids (By similarity). {ECO:0000250}. 51723,24873,29417 Probable amino acid permease 7 (Amino acid transporter AAP7),Amino acid permease 7 integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333]; amino acid transport [GO:0006865],integral component of membrane [GO:0016021] locus:2172868; AT5G23810 amino acid OSJNBa0089K21.6 protein (Os04g0470700 protein) (cDNA clone:J023081F09, full insert sequence),Os04g0659800 protein (Fragment) Q7XQN0,A0A0P0WFV3 Q7XQN0_ORYSJ,A0A0P0WFV3_ORYSJ Os04g0470700 Os04g0470700 OSJNBa0089K21.6 OSNPB_040470700,Os04g0659800 OSNPB_040659800 ENOG411DW75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRO1-like domain OSJNBa0038O10.19 protein (Os04g0527400 protein) (cDNA clone:001-034-F09, full insert sequence) (cDNA clone:J033042F15, full insert sequence) Q7XKI9 Q7XKI9_ORYSJ Os04g0527400 Os04g0527400 OsJ_15536 OSJNBa0038O10.19 OSNPB_040527400 ENOG411DW72 RH1 Q7FGZ2 RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 (EC 3.6.4.13) 3.6.4.13 57716 DEAD-box ATP-dependent RNA helicase 1 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; DEAD/H-box RNA helicase binding [GO:0017151]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2130839; AT4G15850 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 1 (EC 3.6.4.13) Q0DWT8 RH1_ORYSJ Os02g0795900 LOC_Os02g55260 OJ1004_E04.4 OJ1695_H09.19 ENOG411DW73 SPT6,GTB1 Q9CAM1,A8MS85,F4I9Y7,F4I9Y9 SPT62_ARATH,SPT61_ARATH,F4I9Y7_ARATH,F4I9Y9_ARATH Transcription elongation factor SPT6-like,Transcription elongation factor SPT6 homolog (AtSPT6),Global transcription factor group B1 DISRUPTION PHENOTYPE: Embryonic lethality leading to aborted seed development. {ECO:0000269|PubMed:21948524}. FUNCTION: Transcription elongation factor that enhances the transcription elongation by RNA polymerase II (RNAPII). {ECO:0000250|UniProtKB:Q7KZ85}.,FUNCTION: Transcription elongation factor that enhances the transcription elongation by RNA polymerase II (RNAPII) (By similarity). Plays an important role in regulating embryo apical and basal patterning during early embryogenesis, partly through negative regulation of the transcription factors PHABULOSA and PHAVOLUTA. {ECO:0000250|UniProtKB:Q7KZ85}.,FUNCTION: Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). {ECO:0000256|PIRNR:PIRNR036947}. 138133,185034,185850,166396 Transcription elongation factor SPT6-like,Transcription elongation factor SPT6 homolog (AtSPT6),Global transcription factor group B1 transcription elongation factor complex [GO:0008023]; transcriptionally active chromatin [GO:0035327]; DNA binding [GO:0003677]; histone binding [GO:0042393]; nucleosome binding [GO:0031491]; transcription factor activity, core RNA polymerase II binding [GO:0000991]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin maintenance [GO:0070827]; chromatin silencing [GO:0006342]; embryo development ending in seed dormancy [GO:0009793]; mRNA transcription from RNA polymerase II promoter [GO:0042789]; nucleosome organization [GO:0034728]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; regulation of mRNA processing [GO:0050684]; transcription elongation from RNA polymerase II promoter [GO:0006368],cytosol [GO:0005829]; plasmodesma [GO:0009506]; transcription elongation factor complex [GO:0008023]; transcriptionally active chromatin [GO:0035327]; DNA binding [GO:0003677]; histone binding [GO:0042393]; nucleosome binding [GO:0031491]; transcription factor activity, core RNA polymerase II binding [GO:0000991]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; translation elongation factor activity [GO:0003746]; chromatin maintenance [GO:0070827]; chromatin silencing [GO:0006342]; embryo development ending in seed dormancy [GO:0009793]; mRNA transcription from RNA polymerase II promoter [GO:0042789]; nucleosome organization [GO:0034728]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; regulation of mRNA processing [GO:0050684]; transcription elongation from RNA polymerase II promoter [GO:0006368],DNA binding [GO:0003677]; transcription factor activity, core RNA polymerase II binding [GO:0000991]; nucleobase-containing compound metabolic process [GO:0006139]; regulation of DNA-templated transcription, elongation [GO:0032784] DEVELOPMENTAL STAGE: During embryo development, expressed throughout embryos at the globular, heart, torpedo and bent-cotyledon stages. {ECO:0000269|PubMed:21948524}. TISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, vasculature of young leaves, inflorescence meristem, floral meristem, young floral organs, developing ovules and anthers. {ECO:0000269|PubMed:21948524}. locus:2015198;,locus:2206330; AT1G63210,AT1G65440 Transcription elongation factor Os05g0494900 protein (Fragment),Os05g0494800 protein (Fragment) Q0DH32,A0A0P0WP73,A0A0P0WP66 Q0DH32_ORYSJ,A0A0P0WP73_ORYSJ,A0A0P0WP66_ORYSJ Os05g0494900 Os05g0494900 OSNPB_050494900,Os05g0494900 OSNPB_050494900,Os05g0494800 OSNPB_050494800 ENOG411DW70 CPN20 O65282 CH20_ARATH 20 kDa chaperonin, chloroplastic (Chaperonin 10) (Ch-CPN10) (Cpn10) (Chaperonin 20) (Protein Cpn21) FUNCTION: Seems to function only as a co-chaperone, along with CPN60, and in certain cases is essential for the discharge of biologically active proteins from CPN60 (PubMed:17178727, PubMed:23057508). Required to activate the iron superoxide dismutases (FeSOD) (PubMed:23057508). {ECO:0000269|PubMed:17178727, ECO:0000269|PubMed:23057508}.; FUNCTION: Involved in abscisic acid (ABA) signaling, independently of its co-chaperone role. Acts as negative regulator of the CHLH-WRKY40 coupled ABA signaling pathway, downstream of CHLH and upstream of WRKY40. {ECO:0000269|PubMed:23783410}. 26802 20 kDa chaperonin, chloroplastic (Chaperonin 10) (Ch-CPN10) (Cpn10) (Chaperonin 20) (Protein Cpn21) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; plastid [GO:0009536]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; chaperone binding [GO:0051087]; copper ion binding [GO:0005507]; unfolded protein binding [GO:0051082]; chaperone mediated protein folding requiring cofactor [GO:0051085]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; positive regulation of superoxide dismutase activity [GO:1901671]; protein heterotetramerization [GO:0051290]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to unfolded protein [GO:0006986] TISSUE SPECIFICITY: Ubiquitous. Most abundant in leaves and inflorescence. Low levels found in roots. {ECO:0000269|PubMed:10205903}. locus:2180454; AT5G20720 Chaperonin Os06g0196900 protein,Os02g0781400 protein (Putative 20 kDa chaperonin, chloroplast) (cDNA clone:001-012-F02, full insert sequence) (cDNA clone:J033067L06, full insert sequence),Os02g0781400 protein (Putative 20 kDa chaperonin, chloroplast) (cDNA clone:001-041-E07, full insert sequence),Chaperonin (Os06g0196900 protein) (Putative chaperonin 21) (cDNA clone:001-034-G10, full insert sequence) (cDNA, clone: J100085L03, full insert sequence),Os06g0196900 protein (Fragment),Os06g0197550 protein,Os06g0197575 protein (Fragment) Q0DDV4,Q6K826,Q6K822,Q69Y99,A0A0P0WU33,A0A0N7KLP9,A0A0P0WU69 Q0DDV4_ORYSJ,Q6K826_ORYSJ,Q6K822_ORYSJ,Q69Y99_ORYSJ,A0A0P0WU33_ORYSJ,A0A0N7KLP9_ORYSJ,A0A0P0WU69_ORYSJ Os06g0196900 Os06g0196900 OSNPB_060196900,OJ1369_G08.10-1 Os02g0781400 OSNPB_020781400,OJ1369_G08.10-2 Os02g0781400 OSNPB_020781400,P0528E04.36-1 Os06g0196900 OsJ_20450 OSNPB_060196900,Os06g0196900 OSNPB_060196900,Os06g0197550 OSNPB_060197550,Os06g0197575 OSNPB_060197575 ENOG411DW71 A0A1I9LMD5,Q93Z30,A0A1I9LMD9,C0Z2R6,A0A1I9LMD6,F4J703 A0A1I9LMD5_ARATH,Q93Z30_ARATH,A0A1I9LMD9_ARATH,C0Z2R6_ARATH,A0A1I9LMD6_ARATH,F4J703_ARATH Integrin-linked protein kinase family,At4g18950/F13C5_120 (Integrin-linked protein kinase family) (Protein kinase-like protein),AT4G18950 protein (Integrin-linked protein kinase family) 60432,52618,48481,50113,41388,53340 Integrin-linked protein kinase family,At4g18950/F13C5_120 (Integrin-linked protein kinase family) (Protein kinase-like protein),AT4G18950 protein (Integrin-linked protein kinase family) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; integrin-mediated signaling pathway [GO:0007229],cytoplasm [GO:0005737]; cytosol [GO:0005829]; intracellular [GO:0005622]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; integrin-mediated signaling pathway [GO:0007229]; intracellular signal transduction [GO:0035556],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; integrin-mediated signaling pathway [GO:0007229],intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; integrin-mediated signaling pathway [GO:0007229]; intracellular signal transduction [GO:0035556] locus:2117129;,locus:2098999; AT4G18950,AT3G58760 Integrin-linked protein kinase Os01g0748600 protein (Putative ankyrin-kinase) (cDNA clone:001-031-B05, full insert sequence),Os01g0748600 protein Q5JNI5,A0A0P0V840 Q5JNI5_ORYSJ,A0A0P0V840_ORYSJ P0481E12.28-1 Os01g0748600 OsJ_03451 OSNPB_010748600,Os01g0748600 OSNPB_010748600 ENOG411DW78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor NA NA NA NA NA NA NA ENOG411DW79 NOP5-1,NOP5-3,NOP5-2 O04658,O04656,Q9MAB3 NOP5A_ARATH,NOP5C_ARATH,NOP5B_ARATH Probable nucleolar protein 5-1 (MAR-binding NOP56/58 homolog 1) (NOP58-like protein F108) (Nucleolar protein 58-1),Putative nucleolar protein 5-3 (Nucleolar protein 58-3),Probable nucleolar protein 5-2 (MAR-binding NOP56/58 homolog 2) (Nucleolar protein 58-2) FUNCTION: Required for 60S ribosomal subunit biogenesis. {ECO:0000250}. R-ATH-6791226; 58755,49935,59003 Probable nucleolar protein 5-1 (MAR-binding NOP56/58 homolog 1) (NOP58-like protein F108) (Nucleolar protein 58-1),Putative nucleolar protein 5-3 (Nucleolar protein 58-3),Probable nucleolar protein 5-2 (MAR-binding NOP56/58 homolog 2) (Nucleolar protein 58-2) box C/D snoRNP complex [GO:0031428]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; rRNA modification [GO:0000154],box C/D snoRNP complex [GO:0031428]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; rRNA modification [GO:0000154],box C/D snoRNP complex [GO:0031428]; membrane [GO:0016020]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; rRNA modification [GO:0000154] locus:2181211;,locus:2096214; AT5G27120,AT5G27140,AT3G05060 nucleolar protein Nucleolar protein NOP5, putative, expressed (Os03g0350300 protein) (cDNA clone:J033023B01, full insert sequence),Nucleolar protein NOP5, putative, expressed (Os03g0350100 protein) (cDNA clone:J013092O17, full insert sequence),Os03g0350100 protein (Fragment) Q10LH4,Q10LH5,Q0DRW2 Q10LH4_ORYSJ,Q10LH5_ORYSJ,Q0DRW2_ORYSJ LOC_Os03g22740 Os03g0350300 OsJ_10837 OSNPB_030350300,Os03g0350100 LOC_Os03g22730 OSNPB_030350100,Os03g0350100 OSNPB_030350100 ENOG411DW7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) (Fragment) A0A0P0X9S3 A0A0P0X9S3_ORYSJ Os07g0639000 OSNPB_070639000 ENOG411DW7G Q0WPD9,A0A178V9X6,F4J7E1,A0A1I9LR49 Q0WPD9_ARATH,A0A178V9X6_ARATH,F4J7E1_ARATH,A0A1I9LR49_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At3g11620),Alpha/beta-Hydrolases superfamily protein 35095,32180,26882,31720 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At3g11620),Alpha/beta-Hydrolases superfamily protein lipid droplet [GO:0005811]; hydrolase activity [GO:0016787]; lipid storage [GO:0019915],hydrolase activity [GO:0016787] locus:2080802; AT3G11620 Uncharacterised conserved protein (DUF2305) Os01g0958800 protein (Fragment) Q0JFV8 Q0JFV8_ORYSJ Os01g0958800 Os01g0958800 OSNPB_010958800 ENOG411DW7D Q9SUC9 UGPI7_ARATH Uncharacterized GPI-anchored protein At4g28100 33100 Uncharacterized GPI-anchored protein At4g28100 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658] locus:2132942; AT4G28100 NA Os07g0557700 protein Q6Z418 Q6Z418_ORYSJ Os07g0557700 Os07g0557700 OSNPB_070557700 P0567H04.2 ENOG411DW7E PGX1 Q38958 Q38958_ARATH Pectin lyase-like superfamily protein (Polygalacturonase) (Polygalacturonase-like protein) (Putative polygalacturonase) ARA:AT3G26610-MONOMER; 51083 Pectin lyase-like superfamily protein (Polygalacturonase) (Polygalacturonase-like protein) (Putative polygalacturonase) apoplast [GO:0048046]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; cell wall pectin metabolic process [GO:0052546]; flower phyllotactic patterning [GO:0060773]; pectin catabolic process [GO:0045490]; unidimensional cell growth [GO:0009826] locus:2088842; AT3G26610 Polygalacturonase Os01g0549000 protein A0A0P0V3U1 A0A0P0V3U1_ORYSJ Os01g0549000 OSNPB_010549000 ENOG411DW7B PTAC17 Q9M8L6,Q9LMR1 Q9M8L6_ARATH,Q9LMR1_ARATH At1g80480 (Plastid transcriptionally active 17) (Uncharacterized protein T21F11.27),At1g15730/F7H2_7 (Cobalamin biosynthesis CobW-like protein) (F7H2.7 protein) (Putative PRLI-interacting factor L) 49488,50258 At1g80480 (Plastid transcriptionally active 17) (Uncharacterized protein T21F11.27),At1g15730/F7H2_7 (Cobalamin biosynthesis CobW-like protein) (F7H2.7 protein) (Putative PRLI-interacting factor L) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2198993;,locus:2036189; AT1G80480,AT1G15730 COBW domain-containing protein Os02g0800000 protein (PRLI-interacting factor L-like) (cDNA, clone: J100064O18, full insert sequence) Q69IK7 Q69IK7_ORYSJ Os02g0800000 OSJNBa0032L17.6 OSNPB_020800000 ENOG411DW7C EVN,AtDOK1 F4J4C8,A0A1I9LMJ2,A0A1I9LMJ1 EVN_ARATH,A0A1I9LMJ2_ARATH,A0A1I9LMJ1_ARATH Dolichol kinase EVAN (EC 2.7.1.108),Phosphatidate cytidylyltransferase family protein DISRUPTION PHENOTYPE: Pollen tube (PT) overgrowth inside the female gametophyte (FG) without PT rupture. Degenerated pollen grains before maturation, during the early tricellular stage. {ECO:0000269|PubMed:25919390}. FUNCTION: Essential for pollen development. Involved in protein N-glycosylation in the endoplasmic reticulum (ER), especially in the female gametophyte. Mediates pollen tube (PT) reception in synergids through protein glycosylation. {ECO:0000269|PubMed:25919390}. R-ATH-446199; 2.7.1.108 63136,61222,58429 Dolichol kinase EVAN (EC 2.7.1.108),Phosphatidate cytidylyltransferase family protein endoplasmic reticulum [GO:0005783]; integral component of endoplasmic reticulum membrane [GO:0030176]; dolichol kinase activity [GO:0004168]; dolichyl monophosphate biosynthetic process [GO:0043048]; pollen development [GO:0009555]; pollen tube reception [GO:0010483]; protein glycosylation [GO:0006486],integral component of membrane [GO:0016021]; dolichol kinase activity [GO:0004168]; nucleotidyltransferase activity [GO:0016779]; dolichyl monophosphate biosynthetic process [GO:0043048] locus:2075959; AT3G45040 Phosphatidate cytidylyltransferase family protein Os02g0146500 protein (Fragment),Os02g0142250 protein,Os02g0146500 protein A0A0P0VEU4,A0A0P0VEP8,A0A0P0VEU3 A0A0P0VEU4_ORYSJ,A0A0P0VEP8_ORYSJ,A0A0P0VEU3_ORYSJ Os02g0146500 OSNPB_020146500,Os02g0142250 OSNPB_020142250 ENOG411DW7A A0A1P8B6W9,F4JKX0 A0A1P8B6W9_ARATH,F4JKX0_ARATH BTB/POZ domain-containing protein 81758,91787 BTB/POZ domain-containing protein Cul3-RING ubiquitin ligase complex [GO:0031463]; protein ubiquitination [GO:0016567] locus:2130829; AT4G15840 BTB/POZ domain Os01g0932600 protein (cDNA clone:J023048I08, full insert sequence) Q5JMG9 Q5JMG9_ORYSJ Os01g0932600 OSNPB_010932600 P0423A12.14 P0506E04.35 ENOG411DW7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nucleic acid binding protein Os06g0112400 protein (Putative RNA recognition motif (RRM)-containing protein) (cDNA clone:001-011-A08, full insert sequence) (cDNA clone:006-308-H08, full insert sequence) (cDNA clone:J013116H22, full insert sequence) (cDNA clone:J033076C18, full insert sequence) Q5VRZ6 Q5VRZ6_ORYSJ Os06g0112400 Os06g0112400 OSNPB_060112400 P0029D06.26 ENOG411DW7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity) Expansin-A18 (Alpha-expansin-18) (OsEXP18) (OsEXPA18) (OsaEXPa1.3),Expansin-A20 (Alpha-expansin-20) (OsEXP20) (OsEXPA20) (OsaEXPa1.1),Expansin-A19 (Alpha-expansin-19) (OsEXP19) (OsEXPA19) (OsaEXPa1.2) Q4PR48,Q10RK1,Q7G6Z5 EXP18_ORYSJ,EXP20_ORYSJ,EXP19_ORYSJ EXPA18 EXP18 Os03g0155900 LOC_Os03g06040 OsJ_09461 OSJNBa0011L14.15,EXPA20 EXP20 Os03g0156300 LOC_Os03g06060 OsJ_09463 OSJNBa0011L14.13,EXPA19 EXP19 Os03g0156000 LOC_Os03g06050 OsJ_09462 OSJNBa0011L14.14 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DW7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0802000 protein (Putative ring finger protein 126 isoform 1) (cDNA clone:J033125G22, full insert sequence),Os05g0495000 protein Q5VQY5,A0A0P0WNX5 Q5VQY5_ORYSJ,A0A0P0WNX5_ORYSJ Os01g0802000 OSNPB_010802000 P0003D09.28,Os05g0495000 OSNPB_050495000 ENOG411DW7K AGD3 Q5W7F2 AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3 (ARF GAP AGD3) (Protein ARF-GAP DOMAIN 3) (AtAGD3) (Protein FORKED 2) (Protein SCARFACE) (Protein VASCULAR NETWORK 3) Abnormal pattern of leaf veneation. Veins are discontinous in cotyledons although the overall architeture of venation is not affected. Abnormal vein patterning-L. Seiburth-2000 FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Involved in the spatial control of provascular differentiation. Required for the formation of the normal pattern of continuous secondary veins. Involved in auxin signaling but not in polar auxin transport or in auxin responses. Required for PIN1 internalization in roots. {ECO:0000269|PubMed:10887076, ECO:0000269|PubMed:10887077, ECO:0000269|PubMed:15743878, ECO:0000269|PubMed:16698946}. MISCELLANEOUS: Binds to phosphatidylinositol (PI), phosphatidylinositol 4-monophosphate (PIP) and phosphatidylinositol 4,5-bisphosphate (PIP2) but not to phosphatidic acid (PA), phosphatidylcholine (PC) or phosphatidylethanolamine (PE). {ECO:0000269|PubMed:15743878}. 92524 ADP-ribosylation factor GTPase-activating protein AGD3 (ARF GAP AGD3) (Protein ARF-GAP DOMAIN 3) (AtAGD3) (Protein FORKED 2) (Protein SCARFACE) (Protein VASCULAR NETWORK 3) cytosol [GO:0005829]; plasma membrane [GO:0005886]; trans-Golgi network transport vesicle [GO:0030140]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phosphatidylinositol binding [GO:0035091]; endocytosis [GO:0006897]; leaf morphogenesis [GO:0009965]; phloem or xylem histogenesis [GO:0010087]; response to auxin [GO:0009733]; xylem and phloem pattern formation [GO:0010051] DEVELOPMENTAL STAGE: Expression refined to procambial cells during embryogenesis. {ECO:0000269|PubMed:19473324}. TISSUE SPECIFICITY: Broadly expressed. Detected in developing veins of the leaf and root (PubMed:19473324). Detected in roots, hypocotyls, cotyledons, leaves, siliques and shoot apical meristems (PubMed:16698946). {ECO:0000269|PubMed:16698946, ECO:0000269|PubMed:19473324}. locus:2183916; AT5G13300 ADP-ribosylation factor GTPase-activating protein Os08g0537600 protein,Os09g0510700 protein Q0J435,Q0J0G6 Q0J435_ORYSJ,Q0J0G6_ORYSJ Os08g0537600 Os08g0537600 OSNPB_080537600,Os09g0510700 OSNPB_090510700 ENOG411DW7H sks17 Q8LPS9 Q8LPS9_ARATH AT5g66920/MUD21_18 (SKU5 similar 17) ARA:AT5G66920-MONOMER; 60820 AT5g66920/MUD21_18 (SKU5 similar 17) cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; response to karrikin [GO:0080167] locus:2174954; AT5G66920 L-ascorbate oxidase homolog Os07g0119400 protein (Putative pollen-specific protein NTP303),Os07g0119700 protein Q7XIF0,A0A0P0X1S0 Q7XIF0_ORYSJ,A0A0P0X1S0_ORYSJ P0022B05.111 Os07g0119400 OsJ_22905 OSNPB_070119400,Os07g0119700 OSNPB_070119700 ENOG411DW7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Transcription factor LG2 (Protein LIGULELESS 2 homolog) (OsLG2) (rLG2) (bZIP transcription factor 11) (OsbZIP11),Transcription factor TGAL5 (bZIP transcription factor 41) (OsbZIP41) Q5N7C7,Q6F2N0 LG2_ORYSJ,TGAL5_ORYSJ LG2 Os01g0859500 LOC_Os01g64020 OsJ_04144 P0489B03.13 P0679C12.3,TGAL5 Os05g0443900 LOC_Os05g37170 OSJNBa0020H14.17 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17594063}. FUNCTION: Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.,FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411DW7V UPL3,KAK Q6WWW4,B3H700 UPL3_ARATH,B3H700_ARATH E3 ubiquitin-protein ligase UPL3 (Ubiquitin-protein ligase 3) (EC 2.3.2.26) (HECT ubiquitin-protein ligase 3) (HECT-type E3 ubiquitin transferase UPL3) (Protein KAKTUS),HECT ubiquitin protein ligase family protein KAK Increased ploidy level of 64C.,The double mutant exhibits an additive trichome phenotype. The cluster frequency and number of nuclei was similar to that in elc single mutants and the number of branches was similar to that in kak single mutants. Increased trichome branching-M. Herzog-2003 FUNCTION: Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes. {ECO:0000269|PubMed:10224275, ECO:0000269|PubMed:14530964}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-983168; 2.3.2.26 202928,193454 E3 ubiquitin-protein ligase UPL3 (Ubiquitin-protein ligase 3) (EC 2.3.2.26) (HECT ubiquitin-protein ligase 3) (HECT-type E3 ubiquitin transferase UPL3) (Protein KAKTUS),HECT ubiquitin protein ligase family protein KAK cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; DNA endoreduplication [GO:0042023]; trichome branching [GO:0010091],ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:14530964}. locus:2121224; AT4G38600 E3 ubiquitin-protein ligase Os02g0101700 protein (Fragment) Q0E4T3,A0A0P0VDJ6 Q0E4T3_ORYSJ,A0A0P0VDJ6_ORYSJ Os02g0101700 Os02g0101700 OSNPB_020101700,Os02g0101700 OSNPB_020101700 ENOG411DW7W WRKY57 Q9C983,A0A1P8AR93 WRK57_ARATH,A0A1P8AR93_ARATH Probable WRKY transcription factor 57 (WRKY DNA-binding protein 57),WRKY DNA-binding protein 57 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 32042,31472 Probable WRKY transcription factor 57 (WRKY DNA-binding protein 57),WRKY DNA-binding protein 57 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2007081; AT1G69310 Transcription factor Os07g0111400 protein (Putative DNA-binding protein WRKY2) (WRKY18) Q8H5U1 Q8H5U1_ORYSJ OJ1123_C12.118 Os07g0111400 OSNPB_070111400 ENOG411DW7T HOS15 Q9FN19 HOS15_ARATH WD40 repeat-containing protein HOS15 (HIGH OSMOTIC STRESS GENE EXPRESSION 15) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings are hypersensitive to freezing. {ECO:0000269|PubMed:18356294}. Sensitive to low temperature and freezing-H. Shi-2008 FUNCTION: Acts as repressor of cold stress-regulated gene expression. Interacts specifically with and promotes deacetylation of histone H4. Plays a role in gene regulation for plant acclimation and tolerance to cold stress. {ECO:0000269|PubMed:18356294}. 69772 WD40 repeat-containing protein HOS15 (HIGH OSMOTIC STRESS GENE EXPRESSION 15) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; histone deacetylase complex [GO:0000118]; nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; histone deacetylation [GO:0016575]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] locus:2158232; AT5G67320 F-box-like WD repeat-containing protein Os07g0405100 protein (cDNA clone:J033048J08, full insert sequence) Q0D730 Q0D730_ORYSJ Os07g0405100 Os07g0405100 OSNPB_070405100 ENOG411DW7U SHA1 Q8GUG6,F4KCH0,Q9C5A2 Q8GUG6_ARATH,F4KCH0_ARATH,Q9C5A2_ARATH At5g63780 (RING/FYVE/PHD zinc finger superfamily protein) (Uncharacterized protein At5g63780),RING/FYVE/PHD zinc finger superfamily protein,At5g08750 (RING/FYVE/PHD zinc finger superfamily protein) (Uncharacterized protein At5g08750) (Uncharacterized protein At5g08750/T2K12_100) shoot apical meristem arrest Rosette lethal-A. Ikeda-2007 40111,40213,39430 At5g63780 (RING/FYVE/PHD zinc finger superfamily protein) (Uncharacterized protein At5g63780),RING/FYVE/PHD zinc finger superfamily protein,At5g08750 (RING/FYVE/PHD zinc finger superfamily protein) (Uncharacterized protein At5g08750) (Uncharacterized protein At5g08750/T2K12_100) integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270]; maintenance of shoot apical meristem identity [GO:0010492]; meristem development [GO:0048507],integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2160619;,locus:505006592; AT5G63780,AT5G08750 zinc finger Os04g0692300 protein (cDNA clone:J033026O22, full insert sequence) Q0J8Q6 Q0J8Q6_ORYSJ Os04g0692300 Os04g0692300 OsJ_16750 OSNPB_040692300 ENOG411DW7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone deacetylase Histone deacetylase (EC 3.5.1.98),Os11g0201400 protein Q94D35,Q2R9B1,A0A0P0XZX1 Q94D35_ORYSJ,Q2R9B1_ORYSJ,A0A0P0XZX1_ORYSJ Os01g0586400 OSNPB_010586400 P0700A11.2 P0712E02.28,Os11g0200000 LOC_Os11g09370 Os11g0200000 OSNPB_110200000,Os11g0201400 OSNPB_110201400 ENOG411DW7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: wd repeat Os02g0290300 protein (Transducin-like) Q6K884 Q6K884_ORYSJ Os02g0290300 Os02g0290300 OJ1086_G08.1 OJ1756_H07.57 OSNPB_020290300 ENOG411DW7P Q5HZ60 MCES2_ARATH mRNA cap guanine-N7 methyltransferase 2 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 2) (mRNA cap methyltransferase 2) FUNCTION: mRNA capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC (By similarity). {ECO:0000250}. 2.1.1.56 39889 mRNA cap guanine-N7 methyltransferase 2 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 2) (mRNA cap methyltransferase 2) mRNA cap binding complex [GO:0005845]; nucleus [GO:0005634]; mRNA (guanine-N7-)-methyltransferase activity [GO:0004482]; RNA binding [GO:0003723]; 7-methylguanosine mRNA capping [GO:0006370]; RNA (guanine-N7)-methylation [GO:0036265] locus:2083765; AT3G52210 MRNA cap guanine-N7 methyltransferase mRNA cap guanine-N7 methyltransferase 2 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 2) (mRNA cap methyltransferase 2),Os04g0526200 protein (Fragment) Q6K833,A0A0P0WD17 MCES2_ORYSJ,A0A0P0WD17_ORYSJ Os02g0780600 LOC_Os02g54000 OJ1369_G08.2,Os04g0526200 OSNPB_040526200 FUNCTION: mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC (By similarity). {ECO:0000250}. ENOG411DW7Q O64861,O64858,Q3EBG3 O64861_ARATH,O64858_ARATH,Q3EBG3_ARATH DUF946 family protein (DUF946) (Expressed protein) (Uncharacterized protein At2g44260),At2g44230/F4I1.4 (Expressed protein) (Uncharacterized protein At2g44230),DUF946 family protein (DUF946) 60954,59894,64256 DUF946 family protein (DUF946) (Expressed protein) (Uncharacterized protein At2g44260),At2g44230/F4I1.4 (Expressed protein) (Uncharacterized protein At2g44230),DUF946 family protein (DUF946) integral component of membrane [GO:0016021] locus:2050559;,locus:2050610; AT2G44260,AT2G44230 Plant protein of unknown function (DUF946) Os07g0575900 protein Q6ZLA9 Q6ZLA9_ORYSJ OJ1562_B11.134 Os07g0575900 OJ1065_B06.1 OSNPB_070575900 ENOG411DW7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ShKT Os01g0174500 protein (Prolyl 4-hydroxylase-like),Os01g0174500 protein (Fragment) Q5VR08,A0A0N7KCF3 Q5VR08_ORYSJ,A0A0N7KCF3_ORYSJ Os01g0174500 OsJ_00571 OSJNBa0089K24.22 OSNPB_010174500,Os01g0174500 OSNPB_010174500 ENOG411DW7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase Probable cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (OsCesA3),Probable cellulose synthase A catalytic subunit 6 [UDP-forming] (EC 2.4.1.12) (OsCesA6),Probable cellulose synthase A catalytic subunit 5 [UDP-forming] (EC 2.4.1.12) (OsCesA5),Os07g0424400 protein (cDNA clone:J013099F14, full insert sequence),Os07g0252400 protein (Fragment),Os07g0424400 protein (Fragment),Cellulose synthase (EC 2.4.1.12) (Fragment),Os03g0837100 protein (Fragment) Q69V23,Q6YVM4,Q851L8,B7EDF0,A0A0P0X4S1,A0A0P0X536,A0A0N7KNC2,A0A0P0X5H0,A0A0P0W5V1,A0A0P0W5C9 CESA3_ORYSJ,CESA6_ORYSJ,CESA5_ORYSJ,B7EDF0_ORYSJ,A0A0P0X4S1_ORYSJ,A0A0P0X536_ORYSJ,A0A0N7KNC2_ORYSJ,A0A0P0X5H0_ORYSJ,A0A0P0W5V1_ORYSJ,A0A0P0W5C9_ORYSJ CESA3 Os07g0424400 LOC_Os07g24190 P0409D09.11,CESA6 Os07g0252400 LOC_Os07g14850 OsJ_23733 P0669H03.13,CESA5 Os03g0837100 LOC_Os03g62090 OsJ_012702 OSJNBa0042I09.26,Os07g0424400 OSNPB_070424400,Os07g0252400 OSNPB_070252400,Os03g0837100 OSNPB_030837100 FUNCTION: Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250}. ENOG411DW7Y HSFA1D,HSFA1B Q9LQM7,O81821,A0A1P8AQ04 HFA1D_ARATH,HFA1B_ARATH,A0A1P8AQ04_ARATH Heat stress transcription factor A-1d (AtHsfA1d) (AtHsf-01) (Heat shock factor protein 8) (HSF 8) (Heat shock transcription factor 8) (HSTF 8),Heat stress transcription factor A-1b (AtHsfA1b) (AtHsf-18) (Heat shock factor protein 3) (HSF 3) (Heat shock transcription factor 3) (HSTF 3),Heat shock transcription factor A1D FUNCTION: Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).,FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 54524,53576,54185 Heat stress transcription factor A-1d (AtHsfA1d) (AtHsf-01) (Heat shock factor protein 8) (HSF 8) (Heat shock transcription factor 8) (HSTF 8),Heat stress transcription factor A-1b (AtHsfA1b) (AtHsf-18) (Heat shock factor protein 3) (HSF 3) (Heat shock transcription factor 3) (HSTF 3),Heat shock transcription factor A1D cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to heat [GO:0009408]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to heat [GO:0009408]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2028326;,locus:2149050; AT1G32330,AT5G16820 heat stress transcription factor Heat stress transcription factor A-1 (Heat stress transcription factor 13) (OsHsf-13) (Heat stress transcription factor 3) (rHsf3) Q84T61 HSFA1_ORYSJ HSFA1 HSF13 HSF3 Os03g0854500 LOC_Os03g63750 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411E78X P93276 M030_ARATH Uncharacterized mitochondrial protein AtMg00030 (ORF107a) 11971 Uncharacterized mitochondrial protein AtMg00030 (ORF107a) mitochondrion [GO:0005739] locus:504954741; ATMG00030 NA NA NA NA NA NA NA NA ENOG411EJVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0842801 protein A0A0P0VA49 A0A0P0VA49_ORYSJ Os01g0842801 OSNPB_010842801 ENOG411EJVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal Proteins L2 RNA binding domain NA NA NA NA NA NA NA ENOG411EJVK Q9LTR0 Q9LTR0_ARATH At3g20340 (Protein expression protein) 13512 At3g20340 (Protein expression protein) response to oxidative stress [GO:0006979] locus:2092384; AT3G20340 Inherit from euNOG: Conserved gene of NA NA NA NA NA NA NA ENOG411EJVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sas10/Utp3/C1D family NA NA NA NA NA NA NA ENOG411EJVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Periaxin Os07g0599900 protein (cDNA clone:001-105-G06, full insert sequence) Q8H599 Q8H599_ORYSJ OJ1634_B10.117 Os07g0599900 OSNPB_070599900 ENOG411EJVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 family tetramerisation domain NA NA NA NA NA NA NA ENOG411EJVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Single-strand binding protein family Os03g0611700 protein (Single-strand binding protein family protein, expressed) (cDNA clone:J033086A20, full insert sequence),Os03g0611700 protein Q10GV8,A0A0P0W121 Q10GV8_ORYSJ,A0A0P0W121_ORYSJ Os03g0611700 LOC_Os03g41530 OSNPB_030611700,Os03g0611700 OSNPB_030611700 ENOG411EJVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive NA NA NA NA NA NA NA ENOG411EJVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAAX protease self-immunity NA NA NA NA NA NA NA ENOG411EJVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L32p protein family NA NA NA NA NA NA NA ENOG411EJVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CTLH NA NA NA NA NA NA NA ENOG411EJVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor A protein 3 NA NA NA NA NA NA NA ENOG411EJVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 8 NA NA NA NA NA NA NA ENOG411EJV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: RbcX protein NA NA NA NA NA NA NA ENOG411EJV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin superfamily (DUF985) NA NA NA NA NA NA NA ENOG411EJV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tho complex subunit 7 NA NA NA NA NA NA NA ENOG411EJV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: serine threonine kinase NA NA NA NA NA NA NA ENOG411EJV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: splicing factor U2AF NA NA NA NA NA NA NA ENOG411EJV2 O65415,B3H479 O65415_ARATH,B3H479_ARATH At4g21500 (Transmembrane protein) (Uncharacterized protein AT4g21500) (Uncharacterized protein F18E5.120),Transmembrane protein 25009,27133 At4g21500 (Transmembrane protein) (Uncharacterized protein AT4g21500) (Uncharacterized protein F18E5.120),Transmembrane protein integral component of membrane [GO:0016021] locus:2119677;,locus:4515103343; AT4G21500,AT4G05018 NA NA NA NA NA NA NA NA ENOG411EJV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised ACR COG2135 NA NA NA NA NA NA NA ENOG411EJV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subunit 21 of Mediator complex NA NA NA NA NA NA NA ENOG411DZTW URH1 Q9SJM7 URH1_ARATH Uridine nucleosidase 1 (EC 3.2.2.3) (Uridine ribohydrolase 1) FUNCTION: Involved in pyrimidine breakdown rather than in pyrimidine salvage. Unable to use cytidine as a substrate. {ECO:0000269|PubMed:19293370}. ARA:AT2G36310-MONOMER;MetaCyc:AT2G36310-MONOMER; 3.2.2.3;3.2.2.8; 3.2.2.3 36086 Uridine nucleosidase 1 (EC 3.2.2.3) (Uridine ribohydrolase 1) cytosol [GO:0005829]; adenosine nucleosidase activity [GO:0047622]; inosine nucleosidase activity [GO:0047724]; uridine nucleosidase activity [GO:0045437]; xanthosine nucleotidase activity [GO:0072585]; purine nucleoside catabolic process [GO:0006152]; uridine catabolic process [GO:0006218] TISSUE SPECIFICITY: Expressed in leaves, flowers, stems, pollen cells, root tip meristem and root vasculature. {ECO:0000269|PubMed:19293370}. locus:2049435; AT2G36310 Inosine-uridine preferring nucleoside hydrolase Probable uridine nucleosidase 2 (EC 3.2.2.3) (Uridine ribohydrolase 2),Probable uridine nucleosidase 1 (EC 3.2.2.3) (Uridine ribohydrolase 1) Q652Q8,Q6ZJ05 URH2_ORYSJ,URH1_ORYSJ URH2 Os09g0567900 LOC_Os09g39440 OJ1003_C09.5 OsJ_30393,URH1 Os08g0557900 LOC_Os08g44370 OJ1150_A11.30 OsJ_28263 FUNCTION: Involved in pyrimidine breakdown. {ECO:0000250}. ENOG411DRQ9 Q9SYM9,A0A1P8AP93 Y1853_ARATH,A0A1P8AP93_ARATH Receptor-like serine/threonine-protein kinase At1g78530 (EC 2.7.11.1),Protein kinase superfamily protein 2.7.11.1 40226,32589 Receptor-like serine/threonine-protein kinase At1g78530 (EC 2.7.11.1),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2203000; AT1G78530 receptor-like serine threonine-protein kinase Os01g0247500 protein (cDNA clone:J013026J11, full insert sequence) Q0JP36 Q0JP36_ORYSJ Os01g0247500 Os01g0247500 OSNPB_010247500 ENOG411DRQ8 Q9LMY5,A0A1P8ANZ2,A0A1P8ANZ4,A0A1P8ANY2,A0A1P8ANZ6 PPR41_ARATH,A0A1P8ANZ2_ARATH,A0A1P8ANZ4_ARATH,A0A1P8ANY2_ARATH,A0A1P8ANZ6_ARATH Putative pentatricopeptide repeat-containing protein At1g13630,Tetratricopeptide repeat (TPR)-like superfamily protein 93634,77946,94078,73808,92774 Putative pentatricopeptide repeat-containing protein At1g13630,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2009997; AT1G13630 Pentatricopeptide repeat-containing protein Os10g0479200 protein A0A0N7KRY6 A0A0N7KRY6_ORYSJ Os10g0479200 OSNPB_100479200 ENOG411DRQ1 DAR2,DA1,DAR1,AP22.33 Q0WSN2,P0C7Q8,Q8W4F0,A0A1P8B1A8,A0A1P8B191,A0A1P8B494,A0A1P8B1D5,A0A1P8B4A6 DAR2_ARATH,DA1_ARATH,DAR1_ARATH,A0A1P8B1A8_ARATH,A0A1P8B191_ARATH,A0A1P8B494_ARATH,A0A1P8B1D5_ARATH,A0A1P8B4A6_ARATH Protein DA1-related 2,Protein DA1 (Protein SUPPRESSOR OF LARGE SEED AND ORGAN PHENOTYPES OF DA1-1 1),Protein DA1-related 1,DA1-related protein 2,LIM domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18483219}. WT phenotype under normal growth conditions,Increased seed and organ size. Seed mass increased to 132% of WT. Increased seed and ovule volume. Increased cotyledon area. Increased embryo size. Increased total seed yield per plant.Increased integument size. Large flowers with extra petals and carpels. Enlarged somewhat flattened siliques. Round large leaves. Thick stems. All organs have more cells than WT but cell size is the same as WT. Longer lifespan than WT. Thick inflorescence stems; Increased biomass; Large, rounded leaves; Large flowers and seeds; Increased petal and carpel number; Large, slightly flattened siliques; Delayed senescence-M. Bevan-2008 FUNCTION: Ubiquitin receptor that probably regulates developmental process. {ECO:0000250}.,FUNCTION: Ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. May act maternally to control seed mass. {ECO:0000269|PubMed:18483219}. MISCELLANEOUS: 'Da' means 'large' in Chinese. 59426,60364,63308,50075,58488,66207,59876,52868 Protein DA1-related 2,Protein DA1 (Protein SUPPRESSOR OF LARGE SEED AND ORGAN PHENOTYPES OF DA1-1 1),Protein DA1-related 1,DA1-related protein 2,LIM domain-containing protein metal ion binding [GO:0046872]; ubiquitin binding [GO:0043130]; phloem development [GO:0010088]; root development [GO:0048364],metal ion binding [GO:0046872]; ubiquitin binding [GO:0043130]; negative regulation of organ growth [GO:0046621]; plant ovule morphogenesis [GO:0048482]; seed morphogenesis [GO:0048317],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin binding [GO:0043130],metal ion binding [GO:0046872] DEVELOPMENTAL STAGE: Highly expressed during the early stages of leaf, petal, integument, and embryo formation and fade away later in petal and leaf development. {ECO:0000269|PubMed:18483219}. locus:2063932;,locus:2202175;,locus:2115290; AT2G39830,AT1G19270,AT4G36860 DA1-related LIM domain-containing protein, putative, expressed (Os03g0267800 protein),LIM domain containing protein-like (Os06g0182500 protein) Q10NJ6,Q5SMM0 Q10NJ6_ORYSJ,Q5SMM0_ORYSJ Os03g0267800 LOC_Os03g16090 Os03g0267800 OSNPB_030267800,Os06g0182500 OSJNBb0036B04.6 OSNPB_060182500 ENOG411DRQ0 Q9C993,Q5BPZ6,A0A1P8AT61,O23126,A0A1P8AT63,A0A1P8ANU0,A0A1P8AVE4 Q9C993_ARATH,Q5BPZ6_ARATH,A0A1P8AT61_ARATH,O23126_ARATH,A0A1P8AT63_ARATH,A0A1P8ANU0_ARATH,A0A1P8AVE4_ARATH Cyclin-D1-binding protein (Uncharacterized protein F23N20.14),Expressed protein (Grap2/cyclin-D-interacting protein),Cyclin-D1-binding protein,At1g22970/F19G10_8 (Cyclin-D1-binding protein) (Uncharacterized protein F19G10.8),Grap2/cyclin-D-interacting protein 38833,39495,32768,39399,37107,32220,40033 Cyclin-D1-binding protein (Uncharacterized protein F23N20.14),Expressed protein (Grap2/cyclin-D-interacting protein),Cyclin-D1-binding protein,At1g22970/F19G10_8 (Cyclin-D1-binding protein) (Uncharacterized protein F19G10.8),Grap2/cyclin-D-interacting protein nucleus [GO:0005634]; regulation of cell cycle [GO:0051726],regulation of cell cycle [GO:0051726],integral component of membrane [GO:0016021]; regulation of cell cycle [GO:0051726] locus:2026321;,locus:2017724;,locus:2017739; AT1G71150,AT1G22980,AT1G22970 NA Os05g0554500 protein Q6I627 Q6I627_ORYSJ Os05g0554500 Os05g0554500 OJ1263_E10.10 OsJ_19484 OSNPB_050554500 ENOG411DRQ3 F4JJT9,A0A1P8B8N8 SYDM_ARATH,A0A1P8B8N8_ARATH Aspartate--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS),tRNA synthetase class II (D, K and N) family protein FUNCTION: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:P14868}. 6.1.1.12 74517,59708 Aspartate--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS),tRNA synthetase class II (D, K and N) family protein chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrion [GO:0005739]; aspartate-tRNA ligase activity [GO:0004815]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; tRNA aminoacylation for protein translation [GO:0006418],cytoplasm [GO:0005737]; aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; tRNA aminoacylation for protein translation [GO:0006418] locus:2134238; AT4G33760 aspartyl-tRNA Os01g0153400 protein (Fragment) Q0JQL0 Q0JQL0_ORYSJ Os01g0153400 Os01g0153400 OSNPB_010153400 ENOG411DRQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRQ5 PCMP-H18,PCMP-H69 Q56XI1,Q9FXB9 PPR25_ARATH,PPR84_ARATH Pentatricopeptide repeat-containing protein At1g09410, mitochondrial,Pentatricopeptide repeat-containing protein At1g56690, mitochondrial 79794,79705 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial,Pentatricopeptide repeat-containing protein At1g56690, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2012295;,locus:2027554; AT1G09410,AT1G56690 pentatricopeptide repeat-containing protein At1g56690 Os03g0317100 protein C7J0P7 C7J0P7_ORYSJ Os03g0317100 OSNPB_030317100 ENOG411DRQ4 ARID3 Q940Y3,F4INH0 ARID3_ARATH,F4INH0_ARATH AT-rich interactive domain-containing protein 3 (ARID domain-containing protein 3),ARID/BRIGHT DNA-binding domain-containing protein 86570,86043 AT-rich interactive domain-containing protein 3 (ARID domain-containing protein 3),ARID/BRIGHT DNA-binding domain-containing protein nucleus [GO:0005634]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2827523; AT2G17410 ARID BRIGHT DNA-binding domain-containing protein DNA-binding protein-like (Os02g0714300 protein),DNA-binding protein-like (Os06g0622300 protein) Q6ZFT8,Q69XV4 Q6ZFT8_ORYSJ,Q69XV4_ORYSJ Os02g0714300 OJ1479_B12.24 OSNPB_020714300,P0040H10.36-2 Os06g0622300 OSNPB_060622300 ENOG411DRQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transcription factor NA NA NA NA NA NA NA ENOG411DRQ6 EMB1187 O81024 EKI_ARATH Probable ethanolamine kinase (EC 2.7.1.82) (Protein EMBRYO DEFECTIVE 1187) Embryo defective; Globular-D. Meinke-2002 FUNCTION: Involved in phospholipid biosynthesis. Catalyzes the first step in phosphatidylethanolamine biosynthesis (By similarity). {ECO:0000250}. PATHWAY: Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from ethanolamine: step 1/3. ARA:AT2G26830-MONOMER; R-ATH-1483213; 2.7.1.82 42860 Probable ethanolamine kinase (EC 2.7.1.82) (Protein EMBRYO DEFECTIVE 1187) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ethanolamine kinase activity [GO:0004305]; phosphatidylethanolamine biosynthetic process [GO:0006646]; phospholipid biosynthetic process [GO:0008654] locus:2039518; AT2G26830 ethanolamine kinase Os09g0438400 protein (Fragment) A0A0P0XM67 A0A0P0XM67_ORYSJ Os09g0438400 OSNPB_090438400 ENOG411DRQY A0A1P8AXJ9,A0A1P8AXQ0,F4IVP3 A0A1P8AXJ9_ARATH,A0A1P8AXQ0_ARATH,F4IVP3_ARATH Leucine-rich repeat protein kinase family protein 87347,100212,110311 Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; kinase activity [GO:0016301],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2059253; AT2G27060 STYKc Os03g0320800 protein,Os03g0320800 protein (Fragment) A0A0P0VWT6,A0A0P0VXN0 A0A0P0VWT6_ORYSJ,A0A0P0VXN0_ORYSJ Os03g0320800 OSNPB_030320800 ENOG411DRQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic (EC 1.1.1.8),Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic (EC 1.1.1.8),Os05g0495700 protein Q8S2G5,Q65X70,A0A0P0WP59 GPDH2_ORYSJ,GPDH3_ORYSJ,A0A0P0WP59_ORYSJ Os01g0801600 LOC_Os01g58740 OsJ_03778 P0003D09.23,Os05g0495700 LOC_Os05g41590 OJ1579_G03.13 OsJ_19053,Os05g0495700 OSNPB_050495700 FUNCTION: May be involved in cell redox homeostasis. {ECO:0000250}. ENOG411DRQZ BIG1 F4JSZ5,A0A1P8B3G5 BIG1_ARATH,A0A1P8B3G5_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 1 (BIG1) (ARF guanine-nucleotide exchange factor BIG1),SEC7-like guanine nucleotide exchange family protein FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting (By similarity). {ECO:0000250}. 187537,141708 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 (BIG1) (ARF guanine-nucleotide exchange factor BIG1),SEC7-like guanine nucleotide exchange family protein chloroplast [GO:0009507]; cytosol [GO:0005829]; membrane [GO:0016020]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012],ARF guanyl-nucleotide exchange factor activity [GO:0005086]; regulation of ARF protein signal transduction [GO:0032012] locus:2120923; AT4G38200 brefeldin A-inhibited guanine nucleotide-exchange protein Os06g0622800 protein (Fragment),Os02g0193800 protein (Fragment) Q0DAV8,Q0E352 Q0DAV8_ORYSJ,Q0E352_ORYSJ Os06g0622800 Os06g0622800 OSNPB_060622800,Os02g0193800 Os02g0193800 OSNPB_020193800 ENOG411DRQQ RMI1 Q5XUX6,B3H7H7 RMI1_ARATH,B3H7H7_ARATH RecQ-mediated genome instability protein 1 (BLM-associated protein of 75 kDa homolog) (BLAP75),RecQ-mediated instability protein (DUF1767) DISRUPTION PHENOTYPE: sterile due to extensive chromosome breakage in meiosis I. {ECO:0000269|PubMed:19096505, ECO:0000269|PubMed:19096507}. meiosis defective; normal vegetative growth but short siliques suggesting fertility defects. FUNCTION: Essential component of the RMI complex, a complex that plays an important role in the resolution step of homologous recombination, in a process called Holliday Junction dissolution, to limit DNA crossover formation in cells. Together with TOP3A, is essential for the resolution of meiotic recombination intermediates, a step that prevents entanglement of the parental chromosomes. {ECO:0000269|PubMed:19096505, ECO:0000269|PubMed:19096507, ECO:0000269|PubMed:23956219}. 69970,73956 RecQ-mediated genome instability protein 1 (BLM-associated protein of 75 kDa homolog) (BLAP75),RecQ-mediated instability protein (DUF1767) nucleotide binding [GO:0000166]; resolution of meiotic recombination intermediates [GO:0000712],nucleotide binding [GO:0000166]; double-strand break repair via homologous recombination [GO:0000724] locus:2167376; AT5G63540 Domain of unknown function (DUF1767) RecQ-mediated genome instability protein 1 (BLM-associated protein of 75 kDa homolog) (BLAP75),Os04g0391000 protein Q7XRV0,A0A0P0W9I3 RMI1_ORYSJ,A0A0P0W9I3_ORYSJ RMI1 Os04g0391000 OSJNBa0055C08.4,Os04g0391000 OSNPB_040391000 FUNCTION: Essential component of the RMI complex, a complex that plays an important role in the resolution step of homologous recombination, in a process called Holliday Junction dissolution, to limit DNA crossover formation in cells. {ECO:0000250}. ENOG411DRQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Os01g0860400 protein (Putative chitinase) (cDNA clone:002-182-G02, full insert sequence) Q8RZ29 Q8RZ29_ORYSJ Os01g0860400 Os01g0860400 OsJ_04147 OSNPB_010860400 P0489B03.29 P0679C12.19 ENOG411DRQS F4I6V2,F4I6V3 F4I6V2_ARATH,F4I6V3_ARATH Ran BP2/NZF zinc finger-like superfamily protein 68311,53702 Ran BP2/NZF zinc finger-like superfamily protein metal ion binding [GO:0046872] locus:2033572; AT1G70650 zinc finger NA NA NA NA NA NA NA ENOG411DRQR NUG2 Q9C923 NUG2_ARATH Nuclear/nucleolar GTPase 2 (AtNug2) (DAR GTPase 5) FUNCTION: GTPase involved in pre-60S ribosomal subunit maturation. {ECO:0000269|PubMed:21205822}. 65038 Nuclear/nucleolar GTPase 2 (AtNug2) (DAR GTPase 5) nucleolus [GO:0005730]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome biogenesis [GO:0042254] TISSUE SPECIFICITY: Ubiquitous, with higher levels in meristematic regions. {ECO:0000269|PubMed:21205822}. locus:2011561; AT1G52980 GTP-binding protein Nuclear/nucleolar GTPase 2 (OsNug2) Q10LF7 NUG2_ORYSJ NUG2 Os03g0352400 LOC_Os03g22890 OsJ_10852 FUNCTION: GTPase involved in pre-60S ribosomal subunit maturation. {ECO:0000269|PubMed:21205822}. ENOG411DRQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Ankyrin repeat protein-like (Os07g0532500 protein),Os07g0532500 protein (Fragment) Q69IQ0,A0A0P0X738 Q69IQ0_ORYSJ,A0A0P0X738_ORYSJ Os07g0532500 OSJNBa0039D04.7 OSNPB_070532500,Os07g0532500 OSNPB_070532500 ENOG411DRQT PGK3,PGK1 Q9SAJ4,P50318,Q9LD57,F4I3L1 PGKY3_ARATH,PGKH2_ARATH,PGKH1_ARATH,F4I3L1_ARATH Phosphoglycerate kinase 3, cytosolic (EC 2.7.2.3),Phosphoglycerate kinase 2, chloroplastic (EC 2.7.2.3),Phosphoglycerate kinase 1, chloroplastic (EC 2.7.2.3),Phosphoglycerate kinase (EC 2.7.2.3) PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5. {ECO:0000305}.,PATHWAY: Carbohydrate biosynthesis; Calvin cycle. ARA:AT1G56190-MONOMER;,ARA:AT3G12780-MONOMER; R-ATH-70171;R-ATH-70263; 2.7.2.3 42132,49939,50112,42615 Phosphoglycerate kinase 3, cytosolic (EC 2.7.2.3),Phosphoglycerate kinase 2, chloroplastic (EC 2.7.2.3),Phosphoglycerate kinase 1, chloroplastic (EC 2.7.2.3),Phosphoglycerate kinase (EC 2.7.2.3) apoplast [GO:0048046]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; phosphoglycerate kinase activity [GO:0004618]; glycolytic process [GO:0006096]; response to glucose [GO:0009749]; response to heat [GO:0009408]; response to light stimulus [GO:0009416]; response to molecule of bacterial origin [GO:0002237],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; phosphoglycerate kinase activity [GO:0004618]; glycolytic process [GO:0006096]; reductive pentose-phosphate cycle [GO:0019253]; response to cadmium ion [GO:0046686],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; stromule [GO:0010319]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; phosphoglycerate kinase activity [GO:0004618]; glycolytic process [GO:0006096]; reductive pentose-phosphate cycle [GO:0019253]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409],ATP binding [GO:0005524]; phosphoglycerate kinase activity [GO:0004618]; glycolytic process [GO:0006096] DEVELOPMENTAL STAGE: Accumulates in developing seeds 5 days after flowering (DAF). {ECO:0000269|PubMed:20118269}. TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescence. {ECO:0000269|PubMed:24930633}. locus:2206410;,locus:2205215;,locus:2087750; AT1G79550,AT1G56190,AT3G12780 phosphoglycerate kinase Phosphoglycerate kinase (EC 2.7.2.3),Phosphoglycerate kinase (EC 2.7.2.3) (Fragment) Q6H6C7,Q655T1,A0A0P0WP33,A0A0P0WNZ4,A0A0N7KL10,A0A0P0V994 Q6H6C7_ORYSJ,Q655T1_ORYSJ,A0A0P0WP33_ORYSJ,A0A0P0WNZ4_ORYSJ,A0A0N7KL10_ORYSJ,A0A0P0V994_ORYSJ Os02g0169300 OsJ_05543 OSNPB_020169300 P0669G09.19,Os06g0668200 OsJ_22300 OSNPB_060668200 P0637D03.50 P0686E06.13,Os05g0496200 OSNPB_050496200,Os01g0800266 OSNPB_010800266 ENOG411DRQW NOF1 Q8H1E7 Q8H1E7_ARATH U3 small nucleolar RNA-associated protein (Uncharacterized protein At1g17690) Null: Complete female gametophyte defective; Knockdown: Embryo defective-L. Lepiniec-2010 R-ATH-6791226; 86920 U3 small nucleolar RNA-associated protein (Uncharacterized protein At1g17690) nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; rRNA binding [GO:0019843]; U3 snoRNA binding [GO:0034511]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; rRNA transcription [GO:0009303] locus:2007933; AT1G17690 U3 small nucleolar RNA-associated protein Os05g0295100 protein,Os05g0295100 protein (cDNA clone:002-145-A02, full insert sequence) Q0DJF0,B7F1E3 Q0DJF0_ORYSJ,B7F1E3_ORYSJ Os05g0295100 Os05g0295100 OSNPB_050295100,Os05g0295100 OSNPB_050295100 ENOG411DRQV DCP5 Q9C658 DCP5_ARATH Protein decapping 5 DISRUPTION PHENOTYPE: Seedlings with pale and weak cotyledons, characterized by disorganized veins. Impaired mRNA decapping and reduced P-bodies size. Altered transient seed storage proteins (SSPs) translational repression and degradation during seed germination. {ECO:0000269|PubMed:19855049}. Null: Seedling lethal; Knockdown: Pale green cotyledons; Serrated, pointed leaves; Slightly late flowering; Disorganized cotyledon venation; Fragile cotyledons-N. Chua-2009 FUNCTION: As a component of the decapping complex, involved in the degradation of mRNAs. Promotes P-body formation. Translational repressor. {ECO:0000269|PubMed:19855049}. 64370 Protein decapping 5 cytosol [GO:0005829]; P-body [GO:0000932]; mRNA binding [GO:0003729]; protein homodimerization activity [GO:0042803]; cytoplasmic mRNA processing body assembly [GO:0033962]; deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; mRNA processing [GO:0006397]; negative regulation of translation [GO:0017148]; positive regulation of cytoplasmic mRNA processing body assembly [GO:0010606] DEVELOPMENTAL STAGE: Gradually accumulates during seed maturation and reaches maximum levels in dry seeds. Fades progressively upon germination. {ECO:0000269|PubMed:19855049}. locus:2011410; AT1G26110 Pfam:FFD_TFG Os01g0111200 protein,AlphaSNBP(B)-like (Os06g0496000 protein) Q657T0,Q651K5 Q657T0_ORYSJ,Q651K5_ORYSJ Os01g0111200 Os01g0111200 OSNPB_010111200 P0439B06.21,Os06g0496000 B1089G05.24 OSNPB_060496000 ENOG411DRQI ATX3,ATX5,ATX4,SDG14 Q9M364,Q8GZ42,Q9SUE7,F4JFG2,B3H691 ATX3_ARATH,ATX5_ARATH,ATX4_ARATH,F4JFG2_ARATH,B3H691_ARATH Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 14) (Trithorax-homolog protein 3) (TRX-homolog protein 3),Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 29) (Trithorax-homolog protein 5) (TRX-homolog protein 5),Histone-lysine N-methyltransferase ATX4 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 16) (Trithorax-homolog protein 4) (TRX-homolog protein 4) (Trithorax 4),Histone-lysine N-methyltransferase (EC 2.1.1.43),PHD finger protein FUNCTION: Histone methyltransferase. {ECO:0000250}. R-ATH-3214841; 2.1.1.43 115689,119122,116739,111543,8533 Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 14) (Trithorax-homolog protein 3) (TRX-homolog protein 3),Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 29) (Trithorax-homolog protein 5) (TRX-homolog protein 5),Histone-lysine N-methyltransferase ATX4 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 16) (Trithorax-homolog protein 4) (TRX-homolog protein 4) (Trithorax 4),Histone-lysine N-methyltransferase (EC 2.1.1.43),PHD finger protein nucleus [GO:0005634]; DNA binding [GO:0003677]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872],nucleus [GO:0005634]; plasmodesma [GO:0009506]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872]; DNA mediated transformation [GO:0009294],nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872] locus:2076755;,locus:2178446;,locus:2132912;,locus:4515103298; AT3G61740,AT5G53430,AT4G27910,AT3G61723 Histone-lysine n-methyltransferase Os01g0655300 protein (Fragment),Histone-lysine N-methyltransferase (EC 2.1.1.43),Histone-lysine N-methyltransferase (EC 2.1.1.43) (Fragment) Q0JKR4,Q5NAU4,A0A0P0UZP2 Q0JKR4_ORYSJ,Q5NAU4_ORYSJ,A0A0P0UZP2_ORYSJ Os01g0655300 Os01g0655300 OSNPB_010655300,Os01g0218800 OSNPB_010218800 P0489G09.14,Os01g0218800 OSNPB_010218800 ENOG411DRQH THA1,THA2 Q8RXU4,Q9FPH3,A0A1P8ASQ3,F4J4S1 THA1_ARATH,THA2_ARATH,A0A1P8ASQ3_ARATH,F4J4S1_ARATH Probable low-specificity L-threonine aldolase 1 (EC 4.1.2.48) (Threonine aldolase 1),Probable low-specificity L-threonine aldolase 2 (EC 4.1.2.48) (Threonine aldolase 2),Threonine aldolase 1,Threonine aldolase 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have 50-fold increase in seed Thr content and 2-fold decrease in seedling Gly content. {ECO:0000269|PubMed:17172352}.,DISRUPTION PHENOTYPE: Lethal albino phenotype when homozygous. {ECO:0000269|PubMed:17172352}. has a large increase of seed threonine content and a small decrease of most other seed amino acids. glycine content is significantly lower in seedlings.,25% of seeds in developing silique of heterozygous plants are albino and lethal; mature mutant and wild type seeds look identical; but 25% of the developing seedlings are albino fail to mature beyond the cotyledon stage and do not accumulate any chlorophyll pigments. Mutant growth not rescued with exogenous addition of metabolically related amino acids. Significant alteration in the amino acid profiles of most plant tissue types increased seed Threonine (Thr) content; reduced Glicyn (a product of Thr aldolase reaction) content in all plant tissues; increased branched-chain amino acids (Ile Leu and Val) in vegetative tissues except in stems where there is a decrease. Reduced levels of organic acids and sugars citrate and isocitrate levels in seeds and flowers are significantly lower than in wild type; levels of most sugars are significantly decreased in flowers and siliques.,Seeds seedlings and whole homozygous plants do not show any visible phenotypic differences compared to wild type; not lethal. Analysis of the seed amino acid content show no significant Threonine (Thr) increase compared to wild type; Thr and Ile content in plants is not significantly different from the wild type; reduced levels of organic acids and sugars citrate and isocitrate levels in seeds and flowers are significantly lower than in wild type.,albino developing seeds. Heterozygous seeds look normal but have moderate increases of threonine and branched-chain amino acids.,homozygote plant has no visible phenotype. No significant seed threonine increase either. Elevated threonine levels in seeds-G. Jander-2006,Seedling lethal; Albino-G. Jander-2006 FUNCTION: Threonine aldolase involved in threonine degradation to glycine. May play a role in the removal of L-allo-threonine. {ECO:0000269|PubMed:15255874, ECO:0000269|PubMed:17172352}.,FUNCTION: Threonine aldolase involved in threonine degradation to glycine. May play a role in the removal of L-allo-threonine. {ECO:0000269|PubMed:17172352}. PATHWAY: Amino-acid degradation; L-threonine degradation via aldolase pathway; acetaldehyde and glycine from L-threonine: step 1/1. 4.1.2.48 38942,38252,36810,38123 Probable low-specificity L-threonine aldolase 1 (EC 4.1.2.48) (Threonine aldolase 1),Probable low-specificity L-threonine aldolase 2 (EC 4.1.2.48) (Threonine aldolase 2),Threonine aldolase 1,Threonine aldolase 2 cytosol [GO:0005829]; L-allo-threonine aldolase activity [GO:0008732]; threonine aldolase activity [GO:0004793]; glycine biosynthetic process [GO:0006545]; threonine catabolic process [GO:0006567],lyase activity [GO:0016829]; cellular amino acid metabolic process [GO:0006520] TISSUE SPECIFICITY: Expressed in root tips, seedlings, carpels and seeds. {ECO:0000269|PubMed:17172352}.,TISSUE SPECIFICITY: Expressed in roots, leaf vasculature and flowers. {ECO:0000269|PubMed:17172352}. locus:2025645;,locus:2100860; AT1G08630,AT3G04520 Threonine aldolase OSJNBb0072M01.18 protein (Os04g0516600 protein) (cDNA clone:001-031-C08, full insert sequence) (cDNA clone:J023133K04, full insert sequence) Q7X634 Q7X634_ORYSJ Os04g0516600 Os04g0516600 OsJ_15466 OSJNBb0072M01.18 OSNPB_040516600 ENOG411DRQK RPL6 O23049 RK6_ARATH 50S ribosomal protein L6, chloroplastic (Protein EMBRYO DEFECTIVE 2394) Embryo defective; Globular-D. Meinke-2003 FUNCTION: This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center. {ECO:0000250}. 24706 50S ribosomal protein L6, chloroplastic (Protein EMBRYO DEFECTIVE 2394) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ribosome [GO:0005840]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; embryo development ending in seed dormancy [GO:0009793]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:2207190; AT1G05190 ribosomal protein L6 50S ribosomal protein L6, putative, expressed (Os03g0356300 protein) (cDNA clone:006-308-D06, full insert sequence),50S ribosomal protein L6, putative, expressed (Os03g0751400 protein) (Putative chloroplast 50S ribosomal protein L6) (Putative ribosomal protein L6) (cDNA clone:J023004G24, full insert sequence) Q10L93,Q850L8 Q10L93_ORYSJ,Q850L8_ORYSJ Os03g0356300 LOC_Os03g24020 Os03g0356300 OSNPB_030356300,OSJNBa0032E21.12 OSJNBa0047E24.13 LOC_Os03g54040 Os03g0751400 OsJ_12590 OSNPB_030751400 ENOG411DRQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os11g0592500 protein) (cDNA clone:J013129H24, full insert sequence),NB-ARC domain containing protein, expressed (Os11g0684100 protein),Os10g0364400 protein (RGH2A, putative),Os08g0396700 protein (Fragment),Os08g0396700 protein (Putative disease-resistant protein),NB-ARC domain containing protein, expressed (Os12g0281300 protein) (cDNA clone:J013072F24, full insert sequence),NB-ARC domain containing protein, expressed (Os12g0281300 protein) (Pi-ta) (Pi-ta protein),Os05g0479700 protein,Os12g0281300 protein,Os11g0686400 protein,Os11g0686900 protein,Os11g0685600 protein Q2R1U7,Q2QZJ7,Q8W2U2,Q0J5W2,Q69VK4,Q2QTV8,Q2QTV7,A0A0P0XGA6,A0A0P0WNK6,A0A0P0Y947,A0A0P0Y630,A0A0N7KTD1,A0A0P0Y5G1 Q2R1U7_ORYSJ,Q2QZJ7_ORYSJ,Q8W2U2_ORYSJ,Q0J5W2_ORYSJ,Q69VK4_ORYSJ,Q2QTV8_ORYSJ,Q2QTV7_ORYSJ,A0A0P0XGA6_ORYSJ,A0A0P0WNK6_ORYSJ,A0A0P0Y947_ORYSJ,A0A0P0Y630_ORYSJ,A0A0N7KTD1_ORYSJ,A0A0P0Y5G1_ORYSJ Os11g0592500 LOC_Os11g38000 OSNPB_110592500,Os11g0684100 LOC_Os11g45750 Os11g0684100 OSNPB_110684100,Os10g0364400 LOC_Os10g22020 OSJNBb0089F16.3 OSNPB_100364400,Os08g0396700 Os08g0396700 OSNPB_080396700,OJ1297_D02.11-2 Os08g0396700 OSNPB_080396700,LOC_Os12g18360 Os12g0281300 OsJ_35766 OSNPB_120281300,Pi-ta Os12g0281300 LOC_Os12g18360 OSNPB_120281300,Os08g0396700 OSNPB_080396700,Os05g0479700 OSNPB_050479700,Os12g0281300 OSNPB_120281300,Os11g0686400 OSNPB_110686400,Os11g0686900 OSNPB_110686900,Os11g0685600 OSNPB_110685600 ENOG411DRQM Q6ID86 Q6ID86_ARATH At4g34360 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) 28712 At4g34360 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) methyltransferase activity [GO:0008168] locus:2116174; AT4G34360 Methyltransferase domain Os11g0557700 protein (Fragment) A0A0N7KT28,A0A0P0Y3I0 A0A0N7KT28_ORYSJ,A0A0P0Y3I0_ORYSJ Os11g0557700 OSNPB_110557700 ENOG411DRQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 Putative B3 domain-containing protein Os10g0537100 Q8LNN8 Y1071_ORYSJ Os10g0537100 LOC_Os10g39190 OSJNBa0040D23.9 ENOG411DRQA O22911,Q9SLE2,A0A1P8AY45,F4K8K6 O22911_ARATH,Q9SLE2_ARATH,A0A1P8AY45_ARATH,F4K8K6_ARATH At2g47370 (Calcium-dependent phosphotriesterase superfamily protein) (Uncharacterized protein At2g47370),Calcium-dependent phosphotriesterase superfamily protein (Expressed protein) (Uncharacterized protein At2g16760),Calcium-dependent phosphotriesterase superfamily protein,NHL domain-containing protein 35915,35310,30152,18977 At2g47370 (Calcium-dependent phosphotriesterase superfamily protein) (Uncharacterized protein At2g47370),Calcium-dependent phosphotriesterase superfamily protein (Expressed protein) (Uncharacterized protein At2g16760),Calcium-dependent phosphotriesterase superfamily protein,NHL domain-containing protein integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783] locus:2065170;,locus:2059934;,locus:2148820; AT2G47370,AT2G16760,AT5G28660 Inherit from NOG: SMP-30 Gluconolaconase LRE domain protein Expressed protein (Os03g0307400 protein) (cDNA clone:002-168-C09, full insert sequence),Os10g0443000 protein,Os10g0443100 protein,Os01g0292500 protein Q10MI7,A0A0N7KRV2,A0A0P0XVC3,A0A0N7KCS9 Q10MI7_ORYSJ,A0A0N7KRV2_ORYSJ,A0A0P0XVC3_ORYSJ,A0A0N7KCS9_ORYSJ LOC_Os03g19452 Os03g0307400 OSNPB_030307400,Os10g0443000 OSNPB_100443000,Os10g0443100 OSNPB_100443100,Os01g0292500 OSNPB_010292500 ENOG411DRQC Q3E911 PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 56201 Pentatricopeptide repeat-containing protein At5g27460 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2146390; AT5G27460 Pentatricopeptide repeat-containing protein Os02g0796400 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6K8X7 Q6K8X7_ORYSJ Os02g0796400 Os02g0796400 OJ1004_E04.13 OJ1695_H09.28 OsJ_08720 OSNPB_020796400 ENOG411DRQB Q9LFS0,Q0WSJ9,A0A1P8BGN0,A0A1I9LNQ7,F4JC00 Q9LFS0_ARATH,Q0WSJ9_ARATH,A0A1P8BGN0_ARATH,A0A1I9LNQ7_ARATH,F4JC00_ARATH At5g16040 (Regulator of chromosome condensation (RCC1) family protein) (UVB-resistance protein-like),Regulator of chromosome condensation (RCC1) family protein (Uncharacterized protein At3g02510),Regulator of chromosome condensation (RCC1) family protein 42899,42501,36842,36458,33597 At5g16040 (Regulator of chromosome condensation (RCC1) family protein) (UVB-resistance protein-like),Regulator of chromosome condensation (RCC1) family protein (Uncharacterized protein At3g02510),Regulator of chromosome condensation (RCC1) family protein locus:2146142;,locus:2076889; AT5G16040,AT3G02510 Regulator of chromosome condensation Os08g0430700 protein (Putative UVB-resistance protein UVR8) (cDNA clone:J033107K23, full insert sequence) Q6ZKB8 Q6ZKB8_ORYSJ Os08g0430700 Os08g0430700 OJ1124_B05.9 OsJ_27407 OSNPB_080430700 ENOG411DRQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin carboxyl-terminal hydrolase Os11g0573000 protein (Fragment),Os12g0489100 protein (Fragment),Os07g0163800 protein (Fragment) C7J965,Q0INA3,A0A0N7KMZ4 C7J965_ORYSJ,Q0INA3_ORYSJ,A0A0N7KMZ4_ORYSJ Os11g0573000 OSNPB_110573000,Os12g0489100 Os12g0489100 OSNPB_120489100,Os07g0163800 OSNPB_070163800 ENOG411DRQD PCMP-A6 Q38959 PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630, chloroplastic 51224 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2090857; AT3G26630 Pentatricopeptide repeat-containing protein At3g26630 NA NA NA NA NA NA NA ENOG411DRQG F26A9.21 Q9C9H8,A0A1P8AUA2,A0A1P8AUB4,A0A1P8AU94,F4I313 Q9C9H8_ARATH,A0A1P8AUA2_ARATH,A0A1P8AUB4_ARATH,A0A1P8AU94_ARATH,F4I313_ARATH ARM repeat superfamily protein (Uncharacterized protein At1g71410) (Uncharacterized protein F26A9.21),Kinase family with ARM repeat domain-containing protein 98764,90406,76103,82161,100056 ARM repeat superfamily protein (Uncharacterized protein At1g71410) (Uncharacterized protein F26A9.21),Kinase family with ARM repeat domain-containing protein membrane [GO:0016020]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytosol [GO:0005829]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2825374;,locus:2017784; AT1G71410,AT1G22870 kinase family Os01g0616100 protein (Fragment) A0A0P0V582,A0A0P0V581 A0A0P0V582_ORYSJ,A0A0P0V581_ORYSJ Os01g0616100 OSNPB_010616100 ENOG411DRQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Os03g0297900 protein A0A0P0VWD5 A0A0P0VWD5_ORYSJ Os03g0297900 OSNPB_030297900 ENOG411E7FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Complex 1 protein (LYR family) NA NA NA NA NA NA NA ENOG411E7FM RTFL8 Q8S8S3 Q8S8S3_ARATH DVL11 (Expressed protein) (ROTUNDIFOLIA like 8) (Uncharacterized protein At2g39705) (Uncharacterized protein At2g39705/F17A14.8) 9889 DVL11 (Expressed protein) (ROTUNDIFOLIA like 8) (Uncharacterized protein At2g39705) (Uncharacterized protein At2g39705/F17A14.8) shoot system development [GO:0048367] locus:505006308; AT2G39705 DVL family NA NA NA NA NA NA NA ENOG411E7FJ Q9FZG2,Q9FZG0 Q9FZG2_ARATH,Q9FZG0_ARATH T2E6.7 (Uncharacterized protein At1g47820),T2E6.9 10670,7035 T2E6.7 (Uncharacterized protein At1g47820),T2E6.9 locus:2202445;,locus:2826825; AT1G47820,AT1G47813 NA Os06g0717300 protein Q5Z9N4 Q5Z9N4_ORYSJ Os06g0717300 Os06g0717300 OSNPB_060717300 P0481E08.44 P0541C02.11 ENOG411E7FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0667000 protein,Os01g0180100 protein A0A0P0W156,A0A0P0UYZ8 A0A0P0W156_ORYSJ,A0A0P0UYZ8_ORYSJ Os03g0667000 OSNPB_030667000,Os01g0180100 OSNPB_010180100 ENOG411E7FH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0528200 protein Q0JBJ9 Q0JBJ9_ORYSJ Os04g0528200 Os04g0528200 OSNPB_040528200 ENOG411E7FI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing NA NA NA NA NA NA NA ENOG411E7FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein NA NA NA NA NA NA NA ENOG411E7FG SAUR47 Q9LJX7 Q9LJX7_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein At3g20220) (Uncharacterized protein At3g20220/MAL21_26) 13868 SAUR-like auxin-responsive protein family (Uncharacterized protein At3g20220) (Uncharacterized protein At3g20220/MAL21_26) response to auxin [GO:0009733] locus:2087635; AT3G20220 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E7FD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7FE F26G5_50 Q9LXQ2 Q9LXQ2_ARATH At3g44100 (MD-2-related lipid recognition domain-containing protein) (Uncharacterized protein At3g44100) (Uncharacterized protein F26G5_50) 16070 At3g44100 (MD-2-related lipid recognition domain-containing protein) (Uncharacterized protein At3g44100) (Uncharacterized protein F26G5_50) anchored component of membrane [GO:0031225]; cell wall [GO:0005618]; vacuole [GO:0005773]; intracellular sterol transport [GO:0032366] locus:2081368; AT3G44100 ML NA NA NA NA NA NA NA ENOG411E7FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region NA NA NA NA NA NA NA ENOG411E7FC Q8LDQ8 Q8LDQ8_ARATH At5g24165 (Uncharacterized protein At5g24165) 7756 At5g24165 (Uncharacterized protein At5g24165) locus:505006633; AT5G24165 NA Os06g0530200 protein (cDNA clone:001-028-D06, full insert sequence) (cDNA clone:J033020J17, full insert sequence) Q5Z6B8 Q5Z6B8_ORYSJ Os06g0530200 OsJ_21554 OSNPB_060530200 P0410C01.2 P0438E12.23 ENOG411E7FA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0276900 protein (cDNA clone:001-101-F05, full insert sequence) Q5NBP8 Q5NBP8_ORYSJ Os01g0276900 OsJ_01292 OSNPB_010276900 P0038F12.27 ENOG411E7FZ MUA2.8 Q9FKM0 Q9FKM0_ARATH Cotton fiber protein 14662 Cotton fiber protein cellular response to hypoxia [GO:0071456] locus:2174537; AT5G57510 NA Os08g0448100 protein Q6ZCS9 Q6ZCS9_ORYSJ Os08g0448100 OsJ_27513 OSNPB_080448100 P0409A07.19 ENOG411E7FX psbK P56782 PSBK_ARATH Photosystem II reaction center protein K (PSII-K) FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00441}. 6975 Photosystem II reaction center protein K (PSII-K) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; photosynthesis [GO:0015979] locus:504954631; ATCG00070 Photosystem II reaction center protein K Photosystem II reaction center protein K (PSII-K) P0C410,Q6Z1U2 PSBK_ORYSJ,Q6Z1U2_ORYSJ psbK LOC_Osp1g00140 Nip011,psbK Os11g0592350 OSJNBa0022A24.64 OSNPB_110592350 FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00441}.,FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000256|HAMAP-Rule:MF_00441}. ENOG411E7FY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AWPM-19-like family NA NA NA NA NA NA NA ENOG411E7FV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os03g0780350 protein B9F602 B9F602_ORYSJ Os03g0780350 OsJ_12807 OSNPB_030780350 ENOG411E7FW Q9LM90,Q9ZR15,Q9ZR14 Y1060_ARATH,Y4316_ARATH,Y4317_ARATH B3 domain-containing protein At1g20600,Putative B3 domain-containing protein At4g03160,Putative B3 domain-containing protein At4g03170 27283,22310,29234 B3 domain-containing protein At1g20600,Putative B3 domain-containing protein At4g03160,Putative B3 domain-containing protein At4g03170 membrane [GO:0016020]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2030477;,locus:2125482;,locus:2125497; AT1G20600,AT4G03160,AT4G03170 transcription DNA-dependent NA NA NA NA NA NA NA ENOG411E7FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0558500 protein (cDNA, clone: J065017H16, full insert sequence) B7F8D0 B7F8D0_ORYSJ Os04g0558500 OsJ_15752 OSNPB_040558500 ENOG411E7FU Q9SUI0 RC24_ARATH UPF0057 membrane protein At4g30660 8519 UPF0057 membrane protein At4g30660 integral component of membrane [GO:0016021] locus:2131964; AT4G30660 low temperature and salt responsive protein NA NA NA NA NA NA NA ENOG411E7FR Q6NPH1 Q6NPH1_ARATH At1g48200 12866 At1g48200 mitochondrion [GO:0005739] locus:2023777; AT1G48200 NA NA NA NA NA NA NA NA ENOG411E7FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0596101 protein A0A0P0YCI6 A0A0P0YCI6_ORYSJ Os12g0596101 OSNPB_120596101 ENOG411E7FP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7FQ FTRA1 Q9FHL4 Q9FHL4_ARATH At5g23440 (Ferredoxin/thioredoxin reductase subunit A (Variable subunit) 1) (Similarity to ferredoxin-thioredoxin reductase variable chain) (Uncharacterized protein At5g23440) 19825 At5g23440 (Ferredoxin/thioredoxin reductase subunit A (Variable subunit) 1) (Similarity to ferredoxin-thioredoxin reductase variable chain) (Uncharacterized protein At5g23440) chloroplast [GO:0009507]; lipoate synthase activity [GO:0016992]; lipoate biosynthetic process [GO:0009107]; photosynthesis [GO:0015979]; protein lipoylation [GO:0009249] locus:2154443; AT5G23440 Ferredoxin thioredoxin reductase variable alpha chain NA NA NA NA NA NA NA ENOG411E7F8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411E7F9 TED7 Q9FI79 Q9FI79_ARATH At5g48920 (Tracheary element differentiation-related 7) 22750 At5g48920 (Tracheary element differentiation-related 7) integral component of membrane [GO:0016021] locus:2154399; AT5G48920 NA Os04g0438101 protein A0A0N7KJ36 A0A0N7KJ36_ORYSJ Os04g0438101 OSNPB_040438101 ENOG411E7F6 NFD6 Q93ZJ3,A0A1P8B0U7 NFD6_ARATH,A0A1P8B0U7_ARATH Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial,Nuclear fusion defective 6 DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. Male and female gametophyte defective; Rare embryo defective (inferred)-G. Drews-2006 FUNCTION: Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus. {ECO:0000269|PubMed:16698901}. 10451,10773 Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial,Nuclear fusion defective 6 chloroplast [GO:0009507]; mitochondrion [GO:0005739]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197],karyogamy [GO:0000741] locus:505006258; AT2G20585 nuclear fusion defective 6 NA NA NA NA NA NA NA ENOG411E7F7 RALFL32 O23262 RLF32_ARATH Protein RALF-like 32 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 12919 Protein RALF-like 32 apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] locus:2129341; AT4G14010 Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411E7F4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: 60s ribosomal protein NA NA NA NA NA NA NA ENOG411E7F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TraB family NA NA NA NA NA NA NA ENOG411E7F3 BZIP4 Q9LQ65 BZIP4_ARATH Basic leucine zipper 4 (AtbZIP4) FUNCTION: Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. 17235 Basic leucine zipper 4 (AtbZIP4) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2202852; AT1G59530 Basic region leucine zipper NA NA NA NA NA NA NA ENOG411E7F0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0118800 protein (Unknow protein) (cDNA clone:J023001A05, full insert sequence) Q5W7C2 Q5W7C2_ORYSJ Os05g0118800 OSNPB_050118800 P0496H07.21 ENOG411E7F1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0491596 protein (cDNA clone:002-116-H01, full insert sequence) A3C058 A3C058_ORYSJ Os09g0491596 OsJ_29840 OSNPB_090491596 ENOG411EDD9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 NA NA NA NA NA NA NA ENOG411E3IZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EEKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA H3 Os06g0159725 protein (Fragment),Os06g0159750 protein A0A0P0WTA4,A0A0P0WSZ7 A0A0P0WTA4_ORYSJ,A0A0P0WSZ7_ORYSJ Os06g0159725 OSNPB_060159725,Os06g0159750 OSNPB_060159750 ENOG411EEKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox domain Homeobox protein (Os01g0672201 protein) D6BV21 D6BV21_ORYSJ Os01g0672201 OSNPB_010672201 ENOG411EEKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os12g0606800 protein (RNA recognition motif family protein) Q2QMF0 Q2QMF0_ORYSJ Os12g0606800 LOC_Os12g41370 OSNPB_120606800 ENOG411EEKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EEKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0440700 protein,Os04g0440901 protein,Os04g0441266 protein A0A0P0WB07,A0A0P0WAI4,A0A0N7KJ39 A0A0P0WB07_ORYSJ,A0A0P0WAI4_ORYSJ,A0A0N7KJ39_ORYSJ Os04g0440700 OSNPB_040440700,Os04g0440901 OSNPB_040440901,Os04g0441266 OSNPB_040441266 ENOG411EEKT ERF027 Q38Q39 ERF27_ARATH Ethylene-responsive transcription factor ERF027 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 20770 Ethylene-responsive transcription factor ERF027 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; glucosinolate metabolic process [GO:0019760]; transcription, DNA-templated [GO:0006351] locus:2195062; AT1G12630 AP2 NA NA NA NA NA NA NA ENOG411EEKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411EEKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: oxidoreductase 2OG-Fe(II) oxygenase family protein NA NA NA NA NA NA NA ENOG411EEKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EEKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0457700 protein,Os08g0473800 protein (Fragment) Q67U01,C7J5G2 Q67U01_ORYSJ,C7J5G2_ORYSJ Os09g0457700 B1045B05.12 OSNPB_090457700,Os08g0473800 Os08g0473800 OSNPB_080473800 ENOG411EEKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein kinase AMP-activated gamma Os04g0679600 protein (Fragment) A0A0P0WGE7 A0A0P0WGE7_ORYSJ Os04g0679600 OSNPB_040679600 ENOG411EEKJ C0SUU6,Q8S8D6,Q1PF30,A0A1P8AVW9 STKLA_ARATH,STKLG_ARATH,Q1PF30_ARATH,A0A1P8AVW9_ARATH Probable transcription factor At1g11510 (Storekeeper-like protein At1g11510),Probable transcription factor At2g20613 (Storekeeper-like protein At2g20613),DNA-binding storekeeper protein transcriptional regulator-like protein,DNA-binding storekeeper protein-related transcriptional regulator 39231,14945,15360,36100 Probable transcription factor At1g11510 (Storekeeper-like protein At1g11510),Probable transcription factor At2g20613 (Storekeeper-like protein At2g20613),DNA-binding storekeeper protein transcriptional regulator-like protein,DNA-binding storekeeper protein-related transcriptional regulator regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677],DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:2200106;,locus:2827373;,locus:2827512; AT1G11510,AT2G20613,AT2G20805 Protein of unknown function DUF573 NA NA NA NA NA NA NA ENOG411EEKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EEKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM NA NA NA NA NA NA NA ENOG411EEKF CYTB5-C Q9ZNV4 CYB5C_ARATH Cytochrome B5 isoform C (AtCb5-C) FUNCTION: Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases, including fatty acid desaturases. {ECO:0000269|PubMed:22384013}. 14873 Cytochrome B5 isoform C (AtCb5-C) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2039939; AT2G46650 b5 1 atcb5-c cb5-c cb5-c (cytochrome b5 isoform c) NA NA NA NA NA NA NA ENOG411EEKE AtENODL16 Q9MAC1 Q9MAC1_ARATH At3g01070 (Early nodulin-like protein 16) (Lamin-like predicted GPI-anchored protein) (Putative lamin) 18636 At3g01070 (Early nodulin-like protein 16) (Lamin-like predicted GPI-anchored protein) (Putative lamin) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2102157; AT3G01070 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EEKD TRX7 Q9XIF4 TRXH7_ARATH Thioredoxin H7 (AtTrxh7) FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes. 14532 Thioredoxin H7 (AtTrxh7) cytoplasm [GO:0005737]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2025971; AT1G59730 thioredoxin H-type 7 NA NA NA NA NA NA NA ENOG411EEKC F4JK83 F4JK83_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein 31311 Calcium-dependent lipid-binding (CaLB domain) family protein locus:504955431; AT4G15755 C2 domain NA NA NA NA NA NA NA ENOG411EEKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0644100 protein,Os01g0322500 protein B9EYB1,A0A0P0V1Q3 B9EYB1_ORYSJ,A0A0P0V1Q3_ORYSJ Os01g0644100 OsJ_02798 OSNPB_010644100,Os01g0322500 OSNPB_010322500 ENOG411EEK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phage integrase family NA NA NA NA NA NA NA ENOG411EEK8 EC1.5 Q9FGG1 EC15_ARATH Egg cell-secreted protein 1.5 FUNCTION: Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival. {ECO:0000269|PubMed:23180860}. 16850 Egg cell-secreted protein 1.5 cytoplasmic vesicle [GO:0031410]; extracellular region [GO:0005576]; vesicle [GO:0031982]; double fertilization forming a zygote and endosperm [GO:0009567]; regulation of double fertilization forming a zygote and endosperm [GO:0080155]; regulation of protein localization to cell surface [GO:2000008]; single fertilization [GO:0007338] DEVELOPMENTAL STAGE: Confined to the egg cell before fertilization, but disappears upon gamete fusion. Also present in zygotes and early embryos. {ECO:0000269|PubMed:23180860}. TISSUE SPECIFICITY: Restricted to female reproductive tissues, specifically accumulating in storage vesicles of the unfertilized egg cell. {ECO:0000269|PubMed:23180860}. locus:2176080; AT5G64720 Pfam:DUF1278 NA NA NA NA NA NA NA ENOG411EEK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EEK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os02g0138600 protein Q0E436 Q0E436_ORYSJ Os02g0138600 Os02g0138600 OSNPB_020138600 ENOG411EEK5 T7M13.17 Q9SG81 Q9SG81_ARATH FBD domain family (T7M13.17 protein) 33807 FBD domain family (T7M13.17 protein) locus:2103257; AT3G10750 FBD NA NA NA NA NA NA NA ENOG411EEK4 Q58G48 Q58G48_ARATH Uncharacterized protein 20367 Uncharacterized protein locus:2823676; AT1G44608 Protein of unknown function (DUF740) NA NA NA NA NA NA NA ENOG411EEK3 PCR5,PCR4 Q9LS45,Q9LS44 PCR5_ARATH,PCR4_ARATH Protein PLANT CADMIUM RESISTANCE 5 (AtPCR5),Protein PLANT CADMIUM RESISTANCE 4 (AtPCR4) FUNCTION: May be involved in heavy metals transport. {ECO:0000250}. 20103,20150 Protein PLANT CADMIUM RESISTANCE 5 (AtPCR5),Protein PLANT CADMIUM RESISTANCE 4 (AtPCR4) integral component of membrane [GO:0016021] locus:2095082;,locus:2095092; AT3G18450,AT3G18460 May be involved in heavy metals transport (By similarity) NA NA NA NA NA NA NA ENOG411EEK2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os06g0136400 protein,Os06g0135800 protein,Os09g0382700 protein,Os06g0135220 protein Q5VNU0,Q5VNU4,A0A0N7KQQ4,A0A0P0WSL4 Q5VNU0_ORYSJ,Q5VNU4_ORYSJ,A0A0N7KQQ4_ORYSJ,A0A0P0WSL4_ORYSJ Os06g0136400 OSNPB_060136400 P0001H02.33 P0548D03.18,Os06g0135800 OsJ_20035 OSNPB_060135800 P0001H02.26 P0548D03.11,Os09g0382700 OSNPB_090382700,Os06g0135220 OSNPB_060135220 ENOG411EEK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EEK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYRV Q9SJA7 SOX_ARATH Probable sarcosine oxidase (EC 1.5.3.1) ARA:AT2G24580-MONOMER; R-ATH-71064; Peroxisome (04146),Metabolic pathways (01100),Glycine, serine and threonine metabolism (00260),Lysine degradation (00310) 1.5.3.1 45702 Probable sarcosine oxidase (EC 1.5.3.1) sarcosine oxidase activity [GO:0008115]; tetrahydrofolate metabolic process [GO:0046653] locus:2046643; AT2G24580 Sarcosine oxidase Os12g0543600 protein (Sarcosine oxidase, putative, expressed),Os09g0498500 protein Q2QP28,A0A0P0XPG5 Q2QP28_ORYSJ,A0A0P0XPG5_ORYSJ Os12g0543600 LOC_Os12g35890 OSNPB_120543600,Os09g0498500 OSNPB_090498500 ENOG411DYRU NUA A4GSN8 NUA_ARATH Nuclear-pore anchor (Protein TRANSLOCATED PROMOTER REGION) (AtTPR) DISRUPTION PHENOTYPE: Early flowering under both long and short days and pleiotropic alterations in shoot development and auxin signaling. Stunted primary root development in the absence of sucrose. Accumulation of nuclear poly(A)+ RNA and high-molecular weight SUMO conjugates. {ECO:0000269|PubMed:17513499, ECO:0000269|PubMed:17535820, ECO:0000303|PubMed:20872268}. Accumulate nuclear poly(A+) RNA.,Decreased mRNA levels of the floral repressors FLC and MAF4 and increased mRNA levels of the floral activators FT and SOC1.,Extreme early-flowering stunted in growth phyllotaxy defects in the inflorescence.,Increase in SUMO conjugates and decrease in free SUMO.,Similar to nua-1 and esd4-2 single mutants. Have even shorter stamens and reduced fertility than the single mutants. Short inflorescence stems; Small rosette leaves; Abnormal phyllotaxy; Abnormal stamen, petal, and silique development; Reduced fertility; Very early flowering-I. Meier-2007 FUNCTION: Component of the nuclear pore complex. Acts as a docking site for activities required for desumoylation and mRNA export. Required for the proper expression or localization of a subset of miRNAs. Plays a role in meristematic cell division by interacting with spindle assembly checkpoint proteins. {ECO:0000269|PubMed:17513499, ECO:0000269|PubMed:17535820, ECO:0000269|PubMed:19704557, ECO:0000269|PubMed:19704774, ECO:0000303|PubMed:20872268}. RNA transport (03013),Pathways in cancer (05200),MAPK signaling pathway - yeast (04011),Thyroid cancer (05216) 237040 Nuclear-pore anchor (Protein TRANSLOCATED PROMOTER REGION) (AtTPR) chloroplast [GO:0009507]; cytosol [GO:0005829]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; nuclear pore [GO:0005643]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; nucleocytoplasmic transporter activity [GO:0005487]; mitotic spindle assembly checkpoint [GO:0007094]; negative regulation of flower development [GO:0009910]; negative regulation of protein sumoylation [GO:0033234]; poly(A)+ mRNA export from nucleus [GO:0016973]; protein import into nucleus [GO:0006606]; stamen development [GO:0048443] TISSUE SPECIFICITY: Ubiquitous. Highest expression in the shoot apical region. {ECO:0000269|PubMed:17513499, ECO:0000269|PubMed:17535820}. locus:2207390; AT1G79280 Inherit from KOG: translocated promoter region nuclear basket protein NA NA NA NA NA NA NA ENOG411DYRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Thioredoxin-like 1-1, chloroplastic (Lilium-type thioredoxin 1-1) Q6Z4N3 TRL11_ORYSJ Os07g0684100 LOC_Os07g48510 OsJ_25618 OSJNBa0060O17.16 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411DYRD CAMS1,LUP2,LUP5,BAS,LUP1 P0C8Y0,Q8RWT0,Q9FZI2,B6EXY6,Q9C5M3,Q9M9G0,A0A1P8AW29,A0A1P8AVI0,A0A1P8AVK7,A0A1P8AWZ1,A0A1P8ARW8,A0A1P8ARV5,A0A1P8ARV3,A0A1P8ARV6 LUP3_ARATH,LUP2_ARATH,LUP5_ARATH,LUP4_ARATH,LUP1_ARATH,Q9M9G0_ARATH,A0A1P8AW29_ARATH,A0A1P8AVI0_ARATH,A0A1P8AVK7_ARATH,A0A1P8AWZ1_ARATH,A0A1P8ARW8_ARATH,A0A1P8ARV5_ARATH,A0A1P8ARV3_ARATH,A0A1P8ARV6_ARATH Camelliol C synthase (EC 5.4.99.38) (Lupeol synthase 3) (AtLUP3),Amyrin synthase LUP2 (EC 5.4.99.39) (EC 5.4.99.40) (EC 5.4.99.41) (Alpha-amyrin synthase) (Beta-amyrin synthase) (Lupeol synthase 2) (AtLUP2),Lupeol synthase 5 (AtLUP5) (EC 5.4.99.-),Beta-amyrin synthase (AtBAS) (EC 5.4.99.39) (Lupeol synthase 4) (AtLUP4),Lupeol synthase 1 (AtLUP1) (EC 4.2.1.128) (EC 5.4.99.41) (Lupan-3-beta,20-diol synthase),F3F9.1 (Prenyltransferase family protein),Terpene cyclase/mutase family member (EC 5.4.99.-),Camelliol C synthase 1 FUNCTION: Converts oxidosqualene to camelliol C. Minor production of achilleol and beta-amyrin. {ECO:0000269|PubMed:17985917}.,FUNCTION: Multifunctional enzyme that converts oxidosqualene to nine different triterpenes, mainly lupeol, beta-amyrin and alpha-amyrin in a 15:50:30 ratio. {ECO:0000269|PubMed:11247608, ECO:0000269|Ref.6}.,FUNCTION: Multifunctional enzyme that converts oxidosqualene to tirucalla-7,21-diene-3beta-ol and two other triterpene monoalcohols. {ECO:0000269|Ref.6}.,FUNCTION: Converts oxidosqualene to beta-amyrin. {ECO:0000269|PubMed:18977664}.,FUNCTION: Multifunctional enzyme that converts oxidosqualene to lupeol and 3,20-dihydroxylupane. Minor production of beta-amyrin, germanicol, taraxasterol and psi-taraxasterol. {ECO:0000269|PubMed:10930257, ECO:0000269|PubMed:11247608}. ARA:AT1G78955-MONOMER;MetaCyc:AT1G78955-MONOMER;,ARA:AT1G66960-MONOMER;,ARA:GQT-1793-MONOMER;,ARA:GQT-1270-MONOMER; 5.4.99.38;,5.4.99.39;,4.2.1.128;5.4.99.41; 5.4.99.38,5.4.99.39; 5.4.99.40; 5.4.99.41,5.4.99.-,5.4.99.39,4.2.1.128; 5.4.99.41 88156,87515,87623,86953,87352,23496,88793,84648,70140,88071,67956,75488,80429,69431 Camelliol C synthase (EC 5.4.99.38) (Lupeol synthase 3) (AtLUP3),Amyrin synthase LUP2 (EC 5.4.99.39) (EC 5.4.99.40) (EC 5.4.99.41) (Alpha-amyrin synthase) (Beta-amyrin synthase) (Lupeol synthase 2) (AtLUP2),Lupeol synthase 5 (AtLUP5) (EC 5.4.99.-),Beta-amyrin synthase (AtBAS) (EC 5.4.99.39) (Lupeol synthase 4) (AtLUP4),Lupeol synthase 1 (AtLUP1) (EC 4.2.1.128) (EC 5.4.99.41) (Lupan-3-beta,20-diol synthase),F3F9.1 (Prenyltransferase family protein),Terpene cyclase/mutase family member (EC 5.4.99.-),Camelliol C synthase 1 beta-amyrin synthase activity [GO:0042300]; camelliol C synthase activity [GO:0090438],beta-amyrin synthase activity [GO:0042300]; triterpenoid biosynthetic process [GO:0016104],intramolecular transferase activity [GO:0016866],beta-amyrin synthase activity [GO:0042300],beta-amyrin synthase activity [GO:0042300]; lupan-3beta,20-diol synthase activity [GO:0102245]; lupeol synthase activity [GO:0042299],integral component of membrane [GO:0016021]; transferase activity [GO:0016740],integral component of membrane [GO:0016021]; intramolecular transferase activity [GO:0016866] locus:504956092;,locus:2207300;,locus:2019703;,locus:2207315;,locus:2207310;,locus:2032070; AT1G78955,AT1G78960,AT1G66960,AT1G78950,AT1G78970,AT1G78480 beta-Amyrin NA NA NA NA NA NA NA ENOG411DYRB SCPL21,SCPL20,scpl20 Q9LSV8,Q8L7B2,A0A1P8B894 SCP21_ARATH,SCP20_ARATH,A0A1P8B894_ARATH Serine carboxypeptidase-like 21 (EC 3.4.16.-),Serine carboxypeptidase-like 20 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 54885,55833,51053 Serine carboxypeptidase-like 21 (EC 3.4.16.-),Serine carboxypeptidase-like 20 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) extracellular region [GO:0005576]; peroxisome [GO:0005777]; vacuole [GO:0005773]; carboxypeptidase activity [GO:0004180]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; secondary metabolic process [GO:0019748],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}. locus:2123186; AT3G25420,AT4G12910 serine carboxypeptidase-like Serine carboxypeptidase 1 (EC 3.4.16.5) (Carboxypeptidase C) (Serine carboxypeptidase I) [Cleaved into: Serine carboxypeptidase 1 chain A (Serine carboxypeptidase I chain A); Serine carboxypeptidase 1 chain B (Serine carboxypeptidase I chain B)],Carboxypeptidase (EC 3.4.16.-) (Fragment) P37890,A0A0P0Y8L8 CBP1_ORYSJ,A0A0P0Y8L8_ORYSJ CBP1 Os12g0257000 LOC_Os12g15470,Os12g0257000 OSNPB_120257000 ENOG411DYRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411DYRN UBC37 Q941B6,A0A1I9LLL2,A0A1I9LLL0 UBC37_ARATH,A0A1I9LLL2_ARATH,A0A1I9LLL0_ARATH Probable ubiquitin-conjugating enzyme E2 37 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 37) (Ubiquitin carrier protein 37),Ubiquitin-conjugating enzyme 37 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743, ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 45083,31711,48223 Probable ubiquitin-conjugating enzyme E2 37 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 37) (Ubiquitin carrier protein 37),Ubiquitin-conjugating enzyme 37 cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; cellular response to DNA damage stimulus [GO:0006974]; protein polyubiquitination [GO:0000209] locus:505006371; AT3G24515 Ubiquitin-conjugating enzyme Os01g0605300 protein (cDNA clone:001-123-D05, full insert sequence) Q0JLE6 Q0JLE6_ORYSJ Os01g0605300 Os01g0605300 OsJ_02532 OSNPB_010605300 ENOG411DYRI UGT71B1 Q9LSY9 U71B1_ARATH UDP-glycosyltransferase 71B1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71B1) (EC 2.4.1.91) FUNCTION: Possesses quercetin 3-O-glucosyltransferase activity in vitro. Also active in vitro on benzoates and benzoate derivatives. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15352060}. ARA:AT3G21750-MONOMER;MetaCyc:AT3G21750-MONOMER; 2.4.1.-; 2.4.1.91 52666 UDP-glycosyltransferase 71B1 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT71B1) (EC 2.4.1.91) cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152] locus:2093079; AT3G21750 UDP-glucoronosyl and UDP-glucosyl transferase Os07g0510500 protein (Putative glucosyltransferase-3),Os07g0510400 protein (Putative glucosyltransferase) (cDNA clone:001-204-G12, full insert sequence) (cDNA clone:001-204-H01, full insert sequence) Q6Z4B7,Q6Z4C0 Q6Z4B7_ORYSJ,Q6Z4C0_ORYSJ Os07g0510500 OsJ_24402 OSNPB_070510500 P0409B11.26,Os07g0510400 OsJ_24401 OSNPB_070510400 P0409B11.23 ENOG411DYR5 Q9M107,Q9C631,F4I806,F4IHH0 Q9M107_ARATH,Q9C631_ARATH,F4I806_ARATH,F4IHH0_ARATH Uncharacterized protein AT4g03830,Uncharacterized protein F2G19.33,Uncharacterized protein 65145,68585,76907,65422 Uncharacterized protein AT4g03830,Uncharacterized protein F2G19.33,Uncharacterized protein nucleus [GO:0005634] locus:2141486;,locus:2825847;,locus:1006230672;,locus:2055802; AT4G03830,AT1G46696,AT1G51172,AT2G15110 Inherit from NOG: Putative gypsy type transposon Os06g0174800 protein,Os06g0165300 protein,Os06g0174900 protein A0A0P0WTK8,A0A0P0WTC3,A0A0P0WT34 A0A0P0WTK8_ORYSJ,A0A0P0WTC3_ORYSJ,A0A0P0WT34_ORYSJ Os06g0174800 OSNPB_060174800,Os06g0165300 OSNPB_060165300,Os06g0174900 OSNPB_060174900 ENOG411DYR2 BXL2,BXL1 Q94KD8,Q9FGY1 BXL2_ARATH,BXL1_ARATH Probable beta-D-xylosidase 2 (AtBXL2) (EC 3.2.1.-),Beta-D-xylosidase 1 (AtBXL1) (EC 3.2.1.-) (Alpha-L-arabinofuranosidase) (EC 3.2.1.55) DISRUPTION PHENOTYPE: Partially redundant with BXL1. Bxl1 and bxl2 double mutants have shortened siliques and curled leaf edges. {ECO:0000269|PubMed:19458117}.,DISRUPTION PHENOTYPE: Delayed seeds germination resulting from an altered mucilage composition. No visible growth defects; probably due to partial redundancy with BXL2. Bxl1 and bxl2 double mutants have shortened siliques and curled leaf edges. {ECO:0000269|PubMed:19458117}. Abnormal seed mucilage-T. Western-2008 FUNCTION: May be involved in remodeling of xylans during vascular development. {ECO:0000250}.,FUNCTION: Involved in pectic arabinan modification in mucilage secretory cells. Acts also as a beta-D-xylosidase during the remodeling of xylans in vascular development. {ECO:0000269|PubMed:12609041, ECO:0000269|PubMed:15181203, ECO:0000269|PubMed:19458117}. MISCELLANEOUS: Might be processed at the C-terminus. ARA:AT1G02640-MONOMER;,ARA:AT5G49360-MONOMER; 3.2.1.37; 3.2.1.-,3.2.1.-; 3.2.1.55 82985,83524 Probable beta-D-xylosidase 2 (AtBXL2) (EC 3.2.1.-),Beta-D-xylosidase 1 (AtBXL1) (EC 3.2.1.-) (Alpha-L-arabinofuranosidase) (EC 3.2.1.55) plant-type cell wall [GO:0009505]; proteinaceous extracellular matrix [GO:0005578]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; proteinaceous extracellular matrix [GO:0005578]; alpha-L-arabinofuranosidase activity [GO:0046556]; carbohydrate metabolic process [GO:0005975]; seed coat development [GO:0010214] TISSUE SPECIFICITY: Expressed in leaves, stems, seedlings, roots, inflorescences and siliques. {ECO:0000269|PubMed:19458117}.,TISSUE SPECIFICITY: Expressed in leaves, stems, seedlings, roots, inflorescences, siliques and developing seeds. Expressed in the vasculature of the roots, leaves, flowers and silique. Expressed in tissues undergoing secondary cell wall thickening such as protoxylem, metaxylem, intrafascicular cambium and fibers. {ECO:0000269|PubMed:12609041, ECO:0000269|PubMed:15181203, ECO:0000269|PubMed:19458117}. locus:2196060;,locus:2157994; AT1G02640,AT5G49360 beta-D-xylosidase Os11g0673200 protein A0A0P0Y573 A0A0P0Y573_ORYSJ Os11g0673200 OSNPB_110673200 ENOG411DXSA LSH10 Q9S7R3 LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 (Protein ORGAN BOUNDARY 10) FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. 19791 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 (Protein ORGAN BOUNDARY 10) nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] locus:2041514; AT2G42610 Protein of unknown function (DUF640) NA NA NA NA NA NA NA ENOG411DZNT O82177,A0A1P8AYJ0 O82177_ARATH,A0A1P8AYJ0_ARATH DCD (Development and Cell Death) domain protein (Uncharacterized protein At2g35140),DCD (Development and Cell Death) domain protein 98912,101979 DCD (Development and Cell Death) domain protein (Uncharacterized protein At2g35140),DCD (Development and Cell Death) domain protein locus:2063424; AT2G35140 DCD Os09g0563700 protein (cDNA clone:002-112-F09, full insert sequence) (cDNA clone:J033116H13, full insert sequence) Q650Y9 Q650Y9_ORYSJ Os09g0563700 OsJ_30352 OSJNBa0042B15.5 OSNPB_090563700 P0635G10.40 ENOG411E3CQ BHLH86,BHLH83 Q9FJ00,Q9C707 BH086_ARATH,BH083_ARATH Putative transcription factor bHLH086 (Basic helix-loop-helix protein 86) (AtbHLH86) (bHLH 86) (Transcription factor EN 113) (bHLH transcription factor bHLH086),Transcription factor bHLH83 (Basic helix-loop-helix protein 83) (AtbHLH83) (bHLH 83) (Transcription factor EN 112) (bHLH transcription factor bHLH083) 33326,32088 Putative transcription factor bHLH086 (Basic helix-loop-helix protein 86) (AtbHLH86) (bHLH 86) (Transcription factor EN 113) (bHLH transcription factor bHLH086),Transcription factor bHLH83 (Basic helix-loop-helix protein 83) (AtbHLH83) (bHLH 83) (Transcription factor EN 112) (bHLH transcription factor bHLH083) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],mitochondrion [GO:0005739]; nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; root hair initiation [GO:0048766]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Expressed constitutively in flowers. {ECO:0000269|PubMed:12679534}. locus:2156015;,locus:2028957; AT5G37800,AT1G66470 Transcription factor Os02g0710300 protein (cDNA clone:002-143-H06, full insert sequence),BHLH protein-like (Os06g0496400 protein) Q0DY80,Q651K2 Q0DY80_ORYSJ,Q651K2_ORYSJ Os02g0710300 Os02g0710300 OSNPB_020710300,Os06g0496400 B1089G05.30 OsJ_21438 OSNPB_060496400 ENOG411E3CS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os04g0615600 protein (Fragment),Os01g0192500 protein,Os08g0205500 protein Q0JA53,A0A0P0UZA6,A0A0P0XD00 Q0JA53_ORYSJ,A0A0P0UZA6_ORYSJ,A0A0P0XD00_ORYSJ Os04g0615600 Os04g0615600 OSNPB_040615600,Os01g0192500 OSNPB_010192500,Os08g0205500 OSNPB_080205500 ENOG411E3CX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os01g0166000 protein,Os01g0165666 protein,Os05g0303900 protein Q5VQH9,Q5VQI1,B9FKD6 Q5VQH9_ORYSJ,Q5VQI1_ORYSJ,B9FKD6_ORYSJ Os01g0166000 OsJ_00506 OSNPB_010166000 P0701D05.19,Os01g0165666 OsJ_00504 OSNPB_010165666 P0701D05.15,Os05g0303900 OsJ_17972 OSNPB_050303900 ENOG411E3CF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family Os05g0170200 protein (cDNA clone:001-118-D04, full insert sequence),Os05g0170200 protein Q65XS4,A0A0P0WIG0 Q65XS4_ORYSJ,A0A0P0WIG0_ORYSJ Os05g0170200 OSNPB_050170200 P0685E10.5,Os05g0170200 OSNPB_050170200 ENOG411DXSW GRF3,GRF7,GRF5 P42644,Q96300,P42645 14333_ARATH,14337_ARATH,14335_ARATH 14-3-3-like protein GF14 psi (General regulatory factor 3) (Protein RARE COLD INDUCIBLE 1A),14-3-3-like protein GF14 nu (General regulatory factor 7),14-3-3-like protein GF14 upsilon (General regulatory factor 5) DISRUPTION PHENOTYPE: Short primary roots and reduced size, with smaller cells (PubMed:21094157, PubMed:25122152). Disturbed levels of several metabolites (e.g. beta-alanine, threonic acid, phenylalanine, 1,3-diaminopropane dihydrochloride, citrate, glycine, aspartate, glucose, 1,4-diaminobutane, proline, palmitate and shikimate) (PubMed:22104211). Increased miR396 levels in plants lacking simultaneously GRF1, GRF2 and GRF3 (PubMed:22751317). Higher freezing tolerance, and greater levels of cold-inducible genes and ethylene- (ET-) inducible genes leading to higher ET levels, as well as slightly enhanced expression of ACS6 (PubMed:25122152). {ECO:0000269|PubMed:21094157, ECO:0000269|PubMed:22104211, ECO:0000269|PubMed:22751317, ECO:0000269|PubMed:25122152}. FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes (PubMed:7972511, PubMed:7870824, PubMed:16407442). Involved in the regulation of nutrient metabolism (PubMed:22104211, PubMed:21094157). Reciprocal negative transcription regulation of miR396 (PubMed:22751317). Negative regulator of constitutive freezing tolerance and cold acclimation by controlling cold-induced gene expression partially through an ethylene (ET)-dependent pathway; prevents ethylene (ET) biosynthesis, probably by binding 1-aminocyclopropane-1-carboxylate synthases (ACS) to reduce their stability, thus contributing to establish adequate ET levels under both standard and low-temperature conditions (PubMed:25122152). {ECO:0000269|PubMed:16407442, ECO:0000269|PubMed:21094157, ECO:0000269|PubMed:22104211, ECO:0000269|PubMed:22751317, ECO:0000269|PubMed:25122152, ECO:0000303|PubMed:7870824, ECO:0000303|PubMed:7972511}.,FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes.,FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. May be involved in cell cycle regulation by binding to soluble EDE1 and sequestering it in an inactive form during the early stages of mitosis. {ECO:0000269|PubMed:21558460}. R-ATH-1445148;R-ATH-3371453;R-ATH-3371511; 28606,29824,30182 14-3-3-like protein GF14 psi (General regulatory factor 3) (Protein RARE COLD INDUCIBLE 1A),14-3-3-like protein GF14 nu (General regulatory factor 7),14-3-3-like protein GF14 upsilon (General regulatory factor 5) cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protein domain specific binding [GO:0019904]; cellular response to nitrogen starvation [GO:0006995]; cellular response to phosphate starvation [GO:0016036]; cellular response to potassium ion starvation [GO:0051365]; cold acclimation [GO:0009631]; ethylene-activated signaling pathway [GO:0009873]; regulation of metabolic process [GO:0019222]; response to cold [GO:0009409]; response to freezing [GO:0050826],chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; protein domain specific binding [GO:0019904],cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein domain specific binding [GO:0019904]; response to cadmium ion [GO:0046686] locus:2177386;,locus:2076904;,locus:2146147; AT5G38480,AT3G02520,AT5G16050 Is associated with a DNA binding complex that binds to the G box a well-characterized cis-acting DNA regulatory element found in plant genes 14-3-3-like protein GF14-B (G-box factor 14-3-3 homolog B),14-3-3-like protein GF14-C (G-box factor 14-3-3 homolog C),14-3-3-like protein GF14-E (G-box factor 14-3-3 homolog E),14-3-3-like protein GF14-F (14-3-3-like protein S94) (G-box factor 14-3-3 homolog F) (OsGF14a) (Stress-regulated 14-3-3 protein) (SR14-3-3),Os08g0430500 protein (Fragment) Q7XTE8,Q6ZKC0,Q6EUP4,Q06967,A0A0P0XG77 14332_ORYSJ,14333_ORYSJ,14335_ORYSJ,14336_ORYSJ,A0A0P0XG77_ORYSJ GF14B Os04g0462500 LOC_Os04g38870 B0812A04.1 B1358B12.12 OSJNBa0072F16.20,GF14C Os08g0430500 LOC_Os08g33370 OJ1124_B05.7,GF14E Os02g0580300 LOC_Os02g36974 B1267B06.30-1 OJ1115_A05.5-1 OsJ_07268,GF14F Os03g0710800 LOC_Os03g50290 OsJ_12311,Os08g0430500 OSNPB_080430500 FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes.,FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. {ECO:0000250}. ENOG411E3CI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 Os05g0370300 protein A0A0P0WLI2 A0A0P0WLI2_ORYSJ Os05g0370300 OSNPB_050370300 ENOG411E8B1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cell differentiation Phytosulfokines 1 [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)],Os06g0633300 protein Q0DAS9,A0A0P0WZ04 PSK1_ORYSJ,A0A0P0WZ04_ORYSJ PSK1 PSK Os06g0633300 LOC_Os06g42680 OsJ_021203 P0505A04.32-1,Os06g0633300 OSNPB_060633300 FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. MISCELLANEOUS: The N-terminal tripeptide (YIY) is the active core. ENOG411E8B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8B2 Q570L6 Q570L6_ARATH At2g36295 12353 At2g36295 locus:504956027; AT2G36295 NA NA NA NA NA NA NA NA ENOG411E3CJ A0A1I9LPP6 A0A1I9LPP6_ARATH Nuclease 19929 Nuclease Inherit from KOG: transposon protein Os04g0268450 protein,Os02g0589200 protein,Os11g0477400 protein (Fragment),Os11g0202600 protein (Fragment),Os05g0320350 protein,Os01g0497800 protein A0A0P0W8A5,A0A0P0VL16,A0A0P0Y331,A0A0P0Y0E1,A0A0P0WKM6,A0A0P0V3E0 A0A0P0W8A5_ORYSJ,A0A0P0VL16_ORYSJ,A0A0P0Y331_ORYSJ,A0A0P0Y0E1_ORYSJ,A0A0P0WKM6_ORYSJ,A0A0P0V3E0_ORYSJ Os04g0268450 OSNPB_040268450,Os02g0589200 OSNPB_020589200,Os11g0477400 OSNPB_110477400,Os11g0202600 OSNPB_110202600,Os05g0320350 OSNPB_050320350,Os01g0497800 OSNPB_010497800 ENOG411E8B5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH dehydrogenase NA NA NA NA NA NA NA ENOG411E8B7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8B6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase NA NA NA NA NA NA NA ENOG411E8B8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8BA KRP1 Q67Y93 KRP1_ARATH Cyclin-dependent kinase inhibitor 1 (Inhibitor/interactor of CDK protein 1) (KIP-related protein 1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18005227}. FUNCTION: Binds and inhibits CYCD2-1/CDKA-1 kinase complex activity. Regulates cell division which is crucial for plant growth, development and morphogenesis. Functions in turning cells from a mitotic to an endoreplicating cell cycle mode. Acts cell- and non-cell-autonomously to regulate endoreduplication by allowing S phase progression, but blocking entry into mitosis. Keeps on the one hand the plant cell cycle locally controlled, and on the other hand provides a possibility of linking cell cycle control in single cells with the supracellular organization of a tissue or an organ. May target specifically CDKA-1. {ECO:0000269|PubMed:11123800, ECO:0000269|PubMed:12029474, ECO:0000269|PubMed:12566574, ECO:0000269|PubMed:12904210, ECO:0000269|PubMed:15749764, ECO:0000269|PubMed:16376885, ECO:0000269|PubMed:16766674, ECO:0000269|PubMed:17253089, ECO:0000269|PubMed:9087400, ECO:0000269|PubMed:9753775}. MISCELLANEOUS: Plants overexpressing ICK1/KRP1 show altered morphology (including flowers) with a reduction in plant size, cell numbers, pollen germination, seed production and CDK kinase activity. Trichome cells misexpressing ICK1/KRP1 show reduced endoreduplication and cell size, and undergo cell death. ICK1/KRP1 degradation is regulated by the AXR1-dependent RUB conjugation pathway that is required for the function of the SCF complexes. 22283 Cyclin-dependent kinase inhibitor 1 (Inhibitor/interactor of CDK protein 1) (KIP-related protein 1) nucleoplasm [GO:0005654]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; cell cycle arrest [GO:0007050]; G1/S transition of mitotic cell cycle [GO:0000082]; lateral root development [GO:0048527]; lateral root formation [GO:0010311]; leaf development [GO:0048366]; negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045736]; positive regulation of DNA replication [GO:0045740]; response to abscisic acid [GO:0009737]; shoot system development [GO:0048367] DEVELOPMENTAL STAGE: Highly expressed in root pericycle and cell suspension culture during cell cycle arrest. Expressed early in the G1 phase, disappears quickly and starts to increase again to reach a peak before mitosis. {ECO:0000269|PubMed:12000456, ECO:0000269|PubMed:12368490}. TISSUE SPECIFICITY: Expressed at low levels in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18005227, ECO:0000269|PubMed:9753775}. locus:2046778; AT2G23430 cyclin-dependent kinase inhibitor NA NA NA NA NA NA NA ENOG411E8BG AGP18,AGP9 Q9FPR2,Q9C5S0,A0A1P8B701 AGP18_ARATH,AGP9_ARATH,A0A1P8B701_ARATH Lysine-rich arabinogalactan protein 18 (Lys-rich AGP 18),Classical arabinogalactan protein 9,Arabinogalactan protein 18 No visible phenotype. Female gametophyte defective; Embryo defective (inferred)-J. Vielle-Calzada-2004 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 20489,18416,28508 Lysine-rich arabinogalactan protein 18 (Lys-rich AGP 18),Classical arabinogalactan protein 9,Arabinogalactan protein 18 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; megasporogenesis [GO:0009554],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Predominanlty expressed in flowers, and moderately expressed in roots, stems and young leaves. {ECO:0000269|PubMed:15286287, ECO:0000269|PubMed:15840645}.,TISSUE SPECIFICITY: Predominantly expressed in flowers and at a lower level in leaves and siliques. {ECO:0000269|PubMed:11006345}. locus:2126337;,locus:2060475; AT4G37450,AT2G14890 NA NA NA NA NA NA NA NA ENOG411E8BM KPL Q9FFP2 KPL_ARATH Protein KOKOPELLI DISRUPTION PHENOTYPE: Altered male gametophytic development with frequent single-fertilization events leading to reduced seed set due to undeveloped ovules. Increased levels of ARI14 in sperm. {ECO:0000269|PubMed:20478994}. impaired double fertilization FUNCTION: Regulates positively reproductive function by facilitating male gametophyte formation and double fertilization. {ECO:0000269|PubMed:20478994}. MISCELLANEOUS: Transcripts of KPL and ARI14, encoded by adjacent genes organized in a reverse orientation, have the potential to generate natural cis-antisense siRNAs (cis-nat-siRNAs) pair targeting ARI14 in sperm, thus leading to opposite expression levels during male gametophyte development. {ECO:0000269|PubMed:20478994}. 55950 Protein KOKOPELLI double fertilization forming a zygote and endosperm [GO:0009567]; pollen development [GO:0009555]; single fertilization [GO:0007338] DEVELOPMENTAL STAGE: During male gametophyte development, first observed in bicellular pollen, and accumulates gradually during pollen maturation in tricellular pollen and mature pollen. {ECO:0000269|PubMed:20478994}. TISSUE SPECIFICITY: Mostly expressed in pollen and open flowers and, to a lower extent, in closed flowers. {ECO:0000269|PubMed:20478994}. locus:2160659; AT5G63720 NA NA NA NA NA NA NA NA ENOG411E3C1 F4K329 F4K329_ARATH Plasma membrane fusion protein 25099 Plasma membrane fusion protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579] locus:505006669; AT5G42765 NA Os03g0774400 protein (Fragment) A0A0P0W478 A0A0P0W478_ORYSJ Os03g0774400 OSNPB_030774400 ENOG411E8BN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromosome segregation protein Spc25 NA NA NA NA NA NA NA ENOG411E8BQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0133200 protein (cDNA clone:002-142-B10, full insert sequence) Q5VRP9 Q5VRP9_ORYSJ Os06g0133200 OsJ_20014 OSNPB_060133200 P0679C08.28 ENOG411E3C0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os03g0762100 protein) (cDNA clone:002-146-G01, full insert sequence) Q10EU0 Q10EU0_ORYSJ Os03g0762100 LOC_Os03g55400 Os03g0762100 OSNPB_030762100 ENOG411E8BW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant (LEA) group 1 NA NA NA NA NA NA NA ENOG411E8BY Q9C7H4,F4IBP0 Q9C7H4_ARATH,F4IBP0_ARATH O-acyltransferase (WSD1-like) family protein (Uncharacterized protein At1g72110) (Uncharacterized protein F28P5.3),O-acyltransferase (WSD1-like) family protein ARA:GQT-2543-MONOMER; 53545,52513 O-acyltransferase (WSD1-like) family protein (Uncharacterized protein At1g72110) (Uncharacterized protein F28P5.3),O-acyltransferase (WSD1-like) family protein plasma membrane [GO:0005886]; diacylglycerol O-acyltransferase activity [GO:0004144]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; triglyceride biosynthetic process [GO:0019432],diacylglycerol O-acyltransferase activity [GO:0004144]; glycerolipid biosynthetic process [GO:0045017] locus:2030332; AT1G72110 Pfam:UPF0089 NA NA NA NA NA NA NA ENOG411EF69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF68 Q5BPN1,B3H5A5 Y3572_ARATH,B3H5A5_ARATH UPF0725 protein At3g57210,Uncharacterized protein 18292,15146 UPF0725 protein At3g57210,Uncharacterized protein locus:2082588;,locus:4515102577; AT3G57210,AT1G24388 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411DXBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain containing protein Os01g0116400 protein (Putative rust resistance kinase Lr10) (cDNA clone:J013046E24, full insert sequence),Os01g0115800 protein (cDNA clone:J013050K22, full insert sequence),Os01g0114100 protein (Putative rust resistance kinase Lr10) (cDNA clone:J013152M16, full insert sequence),Os01g0113300 protein (Putative rust resistance kinase Lr10) (cDNA clone:J013071F06, full insert sequence),Os01g0113900 protein (Putative receptor-like kinase ARK1AS) (cDNA clone:J013166D14, full insert sequence),Os01g0114600 protein,Os01g0115566 protein,Os01g0115750 protein,Os01g0113400 protein (Fragment),Os01g0115700 protein,Os01g0115751 protein,Os01g0115500 protein (Fragment) Q5ZE83,B7F5Q7,Q656W0,Q657F3,Q656X1,A0A0P0UXQ1,A0A0P0UXA0,A0A0P0UX60,A0A0P0UXC9,A0A0P0UXX1,A0A0P0UXH8,A0A0P0UX71 Q5ZE83_ORYSJ,B7F5Q7_ORYSJ,Q656W0_ORYSJ,Q657F3_ORYSJ,Q656X1_ORYSJ,A0A0P0UXQ1_ORYSJ,A0A0P0UXA0_ORYSJ,A0A0P0UX60_ORYSJ,A0A0P0UXC9_ORYSJ,A0A0P0UXX1_ORYSJ,A0A0P0UXH8_ORYSJ,A0A0P0UX71_ORYSJ Os01g0116400 Os01g0116400 OsJ_00143 OSNPB_010116400 P0698G03.18,Os01g0115800 OSNPB_010115800,Os01g0114100 OJ1212_B09.13 OSNPB_010114100,Os01g0113300 Os01g0113300 OsJ_00109 OSJNBb0032H19.28 OSNPB_010113300,Os01g0113900 OJ1212_B09.10 OSNPB_010113900,Os01g0114600 OSNPB_010114600,Os01g0115566 OSNPB_010115566,Os01g0115750 OSNPB_010115750,Os01g0113400 OSNPB_010113400,Os01g0115700 OSNPB_010115700,Os01g0115751 OSNPB_010115751,Os01g0115500 OSNPB_010115500 ENOG411DXBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dna polymerase Os02g0135700 protein (Putative DNA polymerase V),Os02g0135700 protein (Fragment),Os01g0328101 protein Q6Z0Z0,A0A0P0VEG4,A0A0N7KCV7 Q6Z0Z0_ORYSJ,A0A0P0VEG4_ORYSJ,A0A0N7KCV7_ORYSJ Os02g0135700 OSJNBa0081C13.5 OSNPB_020135700 P0585B01.32,Os02g0135700 OSNPB_020135700,Os01g0328101 OSNPB_010328101 ENOG411DXBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MCB1 protein Transcription factor MYBS2 (Myb-related protein S2) (OsMYBS2),Os10g0562100 protein Q7XC51,A0A0P0XX87 MYBS2_ORYSJ,A0A0P0XX87_ORYSJ MYBS2 LOC_Os10g41260 Os10g0562100 OsJ_32468 OSJNBb0089A17.5 OSNPB_100562100,Os10g0562100 OSNPB_100562100 FUNCTION: Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}. ENOG411DXBP MBB18.24 Q8RW95,F4HTR3,F4HRU0 Q8RW95_ARATH,F4HTR3_ARATH,F4HRU0_ARATH At5g38690/MBB18_24 (Zinc-finger domain of monoamine-oxidase A repressor R1 protein),Zinc-finger domain of monoamine-oxidase A repressor R1 protein 64427,57261,55583 At5g38690/MBB18_24 (Zinc-finger domain of monoamine-oxidase A repressor R1 protein),Zinc-finger domain of monoamine-oxidase A repressor R1 protein nucleus [GO:0005634] locus:2159828;,locus:2008520;,locus:2019584; AT5G38690,AT1G67780,AT1G67270 CONTAINS InterPro DOMAIN s DDT superfamily (InterPro IPR018501) DDT subgroup (InterPro IPR018500) Cell division cycle-associated protein (InterPro IPR018866) Os05g0300700 protein (cDNA clone:J013127H21, full insert sequence),Os05g0300700 protein Q0DJC6,A0A0N7KKH4 Q0DJC6_ORYSJ,A0A0N7KKH4_ORYSJ Os05g0300700 Os05g0300700 OSNPB_050300700,Os05g0300700 OSNPB_050300700 ENOG411DXBQ Q8GWP1 Q8GWP1_ARATH Prefoldin chaperone subunit family protein (Uncharacterized protein At1g03760) (Uncharacterized protein At1g03760/F11M21_31) 44056 Prefoldin chaperone subunit family protein (Uncharacterized protein At1g03760) (Uncharacterized protein At1g03760/F11M21_31) DNA-directed RNA polymerase II, core complex [GO:0005665]; chromatin binding [GO:0003682]; phosphatase inhibitor activity [GO:0019212]; RNA polymerase II transcription corepressor activity [GO:0001106]; negative regulation of phosphatase activity [GO:0010923] locus:2024188; AT1G03760 prefoldin subunit family protein Os01g0928300 protein C7IWE6 C7IWE6_ORYSJ Os01g0928300 Os01g0928300 OSNPB_010928300 ENOG411DXBT ATL5,RPL5B Q8LBI1,P49227,F4J912 RL51_ARATH,RL52_ARATH,F4J912_ARATH 60S ribosomal protein L5-1,60S ribosomal protein L5-2,Ribosomal protein L5 Palisade mesophyll cells are reduced in number but apparently normal in size. Plants have pointed leaves and increased air spaces in the palisade mesophyll.,Cell number in first leaves decreased to <20% of the wild type level and cell size increased to more than 2.5-fold the wild type size.,Decrease in cell number of 30-60% with respect to the wild type in the first leaves. Palisade cells are 1.5 to 2-fold larger in size than wild type. Leaf area is slightly reduced compared to parental single mutants.,Number of cotyledons varies from one to four.,Shorter primary roots with respect to the wild type. Slightly pointed, serrated leaves-M. Byrne-2008,Short hypocotyl; Narrow, elongated rosette leaves; Short roots; Late flowering-M. Van Lijsebettens-2010 FUNCTION: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel. {ECO:0000250|UniProtKB:P26321}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 34358,34437,21545 60S ribosomal protein L5-1,60S ribosomal protein L5-2,Ribosomal protein L5 chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuole [GO:0005773]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; adaxial/abaxial pattern specification [GO:0009955]; cell proliferation [GO:0008283]; leaf morphogenesis [GO:0009965]; mature ribosome assembly [GO:0042256]; nucleocytoplasmic transport [GO:0006913]; response to cytokinin [GO:0009735]; ribosomal large subunit assembly [GO:0000027]; ribosome assembly [GO:0042255]; root morphogenesis [GO:0010015]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; cell proliferation [GO:0008283]; leaf morphogenesis [GO:0009965]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2094508;,locus:2167042; AT3G25520,AT5G39740 60S ribosomal protein 60S ribosomal protein L5-2,60S ribosomal protein L5-1,Os01g0896800 protein (Fragment) Q8L4L4,Q0JGY1,A0A0P0VBK7 RL52_ORYSJ,RL51_ORYSJ,A0A0P0VBK7_ORYSJ RPL5B Os01g0896700 LOC_Os01g67134 OsJ_04400 P0674H09.11 P0696G06.29,RPL5A RPL5 Os01g0896800 LOC_Os01g67134 P0674H09.12 P0696G06.30,Os01g0896800 OSNPB_010896800 FUNCTION: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel. {ECO:0000250|UniProtKB:P26321}. ENOG411DXBH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os06g0234800 protein A0A0P0WV04 A0A0P0WV04_ORYSJ Os06g0234800 OSNPB_060234800 ENOG411DXBM RST1 Q7XZF5 RST1_ARATH Protein RST1 (Protein RESURRECTION 1) DISRUPTION PHENOTYPE: Shrunken non viable seeds due to arrested embryo development when homozygous. Alteration in cuticular waxes with elevated amounts of cutin monomers in leaves. Susceptibility to the obligate biotrophic fungus E.cichoracearum and increased resistance to the necrotrophic fungi B.cinerea and A.brassicicola. {ECO:0000269|PubMed:16183838, ECO:0000269|PubMed:19625635}. Mutant plants showed alterations in the cuticular wax profiles and embryo development. Similar to rst1-1.,Oil bodies of ole1 ole3 double mutant are much larger than ole1 and ole3 single mutants. ole1 ole3 seeds hardly germinate. None of them that are treated with freezing (at -30°C for 1 day) germinate.,Oil bodies of ole2 ole3 double mutant are much larger than ole2 and ole3 single mutants. Treating ole2 ole3 seeds with freezing (at -30°C for 1 day) inhibits and delays their germination although ole2 ole3 seeds without freezing germinate normally.,ole3 seeds have larger oil bodies than wild-type. OLE3 dificiency leads to loss of freezing tolerance of Arabidopsis seeds. Treating ole3 seeds with freezing (at -30°C for 1 day) slightly delay their germination although ole3 seeds without freezing treatment germinate normally. Oil bodies of ole1 ole3 double mutant are much larger than ole3. ole1 ole3 seeds hardly germinate. None of ole1 ole3 seeds treated with freezing (at -30°C for 1 day) germinate. Oil bodies of ole2 ole3 double mutant are much larger than ole3. Treating ole2 ole3 seeds with freezing (at -30°C for 1 day) inhibits and delays their germination although ole2 ole3 seeds without freezing germinate normally.,Mutant plants showed alterations in the cuticular wax profiles and embryo development. Compared to wild type the wax on inflorescence stems in mutants is reduced nearly 60% in total amount has a proportional reduction in aldehydes and aldehyde metabolites and has a proportional increase in acids primary alcohols and esters. Also the C29 alkanes in mutants are nearly 6-fold lower and the C30 primary alcohols are 4-fold higher compared to the wild type. In contrast to stems the wax on mutant leaves increased roughly 43% in amount relative to the wild type with the major increase occurring in the C31 and C33 alkanes. Approximately 70% of mutant seeds are shrunken and nonviable with these being randomly distributed within both inflorescence and silique. Viable mutant seeds are slightly larger than those of wild type; the proportions of these fatty acids are not significantly different from wild type. Shrunken seeds contain 34% of the fatty acids of wild-type seeds with proportionally more palmitic stearic and oleic acids and less of the longer and more desaturated homologs. Histological analysis of aborted rst1 seeds revealed that embryo development terminates at the approximate heart-shaped stage whereas viable rst1 and wild-type embryos develop similarly. Embryo defective; Cotyledon-M. Jenks-2007 FUNCTION: Involved in cuticular wax formation. Required for the synthesis of alkanes from wax precursors. May play a role in acyl-CoA reduction to aldehydes. {ECO:0000269|PubMed:16183838, ECO:0000269|PubMed:19625635}. 203747 Protein RST1 (Protein RESURRECTION 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; alkane biosynthetic process [GO:0043447]; cuticle hydrocarbon biosynthetic process [GO:0006723]; defense response [GO:0006952]; embryo development ending in seed dormancy [GO:0009793]; lipid metabolic process [GO:0006629]; seed development [GO:0048316] TISSUE SPECIFICITY: Expressed in the vasculature of leaves, petioles and hypocotyls, anthers of mature flowers and siliques. Expressed at low levels in roots and stems. {ECO:0000269|PubMed:16183838, ECO:0000269|PubMed:19625635}. locus:2089114; AT3G27670 Protein of unknown function (DUF3730) Os01g0169500 protein (Putative RST1),Os01g0169500 protein (Fragment) Q8LQU3,A0A0P0UYS0 Q8LQU3_ORYSJ,A0A0P0UYS0_ORYSJ Os01g0169500 Os01g0169500 OJ1276_B06.30 OSNPB_010169500,Os01g0169500 OSNPB_010169500 ENOG411DXBC A0A1P8B258,F4IUG1 A0A1P8B258_ARATH,F4IUG1_ARATH RNI-like superfamily protein 55063,67217 RNI-like superfamily protein locus:2039027; AT2G20210 Leucine-rich repeat family protein NA NA NA NA NA NA NA ENOG411DXBA Q56XY3,Q9SKD8,A8MQR1,A0A178VJ35,B3H5Y3 Q56XY3_ARATH,Q9SKD8_ARATH,A8MQR1_ARATH,A0A178VJ35_ARATH,B3H5Y3_ARATH Helicase with zinc finger protein (Uncharacterized protein At3g61700),At2g46420/F11C10.11 (Expressed protein) (Helicase with zinc finger protein),Helicase with zinc finger protein 39235,39559,39815,39034,37586 Helicase with zinc finger protein (Uncharacterized protein At3g61700),At2g46420/F11C10.11 (Expressed protein) (Helicase with zinc finger protein),Helicase with zinc finger protein helicase activity [GO:0004386] locus:2039069;,locus:2076805; AT3G61700,AT2G46420 plant-specific domain TIGR01589 family protein Os01g0220200 protein A0A0P0UZR1 A0A0P0UZR1_ORYSJ Os01g0220200 OSNPB_010220200 ENOG411DXBF F4JEP8 F4JEP8_ARATH Rho GTPase-activating protein 50332 Rho GTPase-activating protein locus:2085760; AT3G20490 NA OSJNBa0053K19.23 protein (Os04g0625100 protein),Os04g0625100 protein (Fragment) Q7XPQ0,A0A0N7KJQ9 Q7XPQ0_ORYSJ,A0A0N7KJQ9_ORYSJ Os04g0625100 Os04g0625100 OSJNBa0053K19.23 OSNPB_040625100,Os04g0625100 OSNPB_040625100 ENOG411DXB8 PBL23 F4JEQ2,A0A1I9LSQ7 PBL23_ARATH,A0A1I9LSQ7_ARATH Probable serine/threonine-protein kinase PBL23 (EC 2.7.11.1) (PBS1-like protein 23),Protein kinase superfamily protein FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 43642,34891 Probable serine/threonine-protein kinase PBL23 (EC 2.7.11.1) (PBS1-like protein 23),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2085720; AT3G20530 serine threonine-protein kinase Os05g0498900 protein (Putative receptor-like protein kinase) (cDNA clone:J023078C24, full insert sequence) Q6L4U4 Q6L4U4_ORYSJ Os05g0498900 Os05g0498900 OJ1057_B02.4 OSNPB_050498900 P0010D04.15 ENOG411DXB2 CTF2B,CTF2A O82384,Q9ZQN9,F4IKT4 O82384_ARATH,Q9ZQN9_ARATH,F4IKT4_ARATH FAD/NAD(P)-binding oxidoreductase family protein (Putative monooxygenase),FAD/NAD(P)-binding oxidoreductase family protein ARA:AT2G29720-MONOMER;,ARA:AT2G35660-MONOMER; 46885,48315,36062 FAD/NAD(P)-binding oxidoreductase family protein (Putative monooxygenase),FAD/NAD(P)-binding oxidoreductase family protein FAD binding [GO:0071949]; monooxygenase activity [GO:0004497]; secondary metabolite biosynthetic process [GO:0044550],FAD binding [GO:0071949]; oxidoreductase activity [GO:0016491] locus:2060584;,locus:2058723; AT2G29720,AT2G35660 FAD binding domain Os07g0491900 protein A0A0P0X6B3 A0A0P0X6B3_ORYSJ Os07g0491900 OSNPB_070491900 ENOG411DXB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Copper chaperone, putative (Os10g0537400 protein) Q8LNN6 Q8LNN6_ORYSJ OSJNBa0040D23.10 Os10g0537400 LOC_Os10g39210 OsJ_32289 OSNPB_100537400 ENOG411DXB0 FMOGS-OX3,FMOGS-OX1,FMOGS-OX4,FMOGS-OX5,FMOGS-OX2,FMO GS-OX3,NOGC1,FMO,FMO GS-OX2 Q9C8U0,Q9C8T8,Q9SXE1,Q9FWW3,Q9SH25,Q9SS04,Q9FWW6,Q93Y23,Q9SXD5,Q9SXD9,A8MRX0,Q94BV5,Q94K43,Q9FWW9,A0A1P8APM2,A0A1P8AW72,A0A1P8AMK6,A0A1P8APX2,A0A1P8AVP8,A0A1P8AVR0,A0A1P8AP83,A0A1P8APF2 GSXL5_ARATH,GSXLX_ARATH,GSOX3_ARATH,GSXL6_ARATH,GSXLY_ARATH,GSOX1_ARATH,GSXL1_ARATH,GSOX4_ARATH,GSXL3_ARATH,GSXL7_ARATH,GSOX5_ARATH,GSXL4_ARATH,GSOX2_ARATH,GSXL2_ARATH,A0A1P8APM2_ARATH,A0A1P8AW72_ARATH,A0A1P8AMK6_ARATH,A0A1P8APX2_ARATH,A0A1P8AVP8_ARATH,A0A1P8AVR0_ARATH,A0A1P8AP83_ARATH,A0A1P8APF2_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 5),Putative flavin-containing monooxygenase FMO GS-OX-like 10 (EC 1.8.-.-) (Putative flavin-monooxygenase glucosinolate S-oxygenase-like 10),Flavin-containing monooxygenase FMO GS-OX3 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 3),Flavin-containing monooxygenase FMO GS-OX-like 6 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 6),Putative flavin-containing monooxygenase FMO GS-OX-like 11 (EC 1.8.-.-) (Putative flavin-monooxygenase glucosinolate S-oxygenase-like 11),Flavin-containing monooxygenase FMO GS-OX1 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 1) (Putative flavin-containing monooxygenase 3),Flavin-containing monooxygenase FMO GS-OX-like 1 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 1),Flavin-containing monooxygenase FMO GS-OX4 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 4),Flavin-containing monooxygenase FMO GS-OX-like 3 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 3),Flavin-containing monooxygenase FMO GS-OX-like 7 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 7),Flavin-containing monooxygenase FMO GS-OX5 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 5),Flavin-containing monooxygenase FMO GS-OX-like 4 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 4),Flavin-containing monooxygenase FMO GS-OX2 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 2),Flavin-containing monooxygenase FMO GS-OX-like 2 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 2),Flavin-containing monooxygenase (EC 1.-.-.-) DISRUPTION PHENOTYPE: Increased accumulation of methylthiopropyl glucosinolates in leaves and seeds. {ECO:0000269|PubMed:18799661}.,DISRUPTION PHENOTYPE: Increased accumulation of methylthiobutyl, -pentyl and -heptyl glucosinolates in leaves. No effects in seeds. {ECO:0000269|PubMed:17461789}.,DISRUPTION PHENOTYPE: No visible phenotype in leaves or seeds; due to the redundancy with other FMO GS-OXs. {ECO:0000269|PubMed:18799661}.,DISRUPTION PHENOTYPE: Increased accumulation of methylthiooctyl glucosinolates in seeds. {ECO:0000269|PubMed:18799661}.,DISRUPTION PHENOTYPE: Increased accumulation of methylthiobutyl, -pentyl, -heptyl and -octyl glucosinolates in leaves and seeds. {ECO:0000269|PubMed:18799661}. FUNCTION: Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. {ECO:0000250}.,FUNCTION: Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta. {ECO:0000269|PubMed:18799661}.,FUNCTION: Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime. {ECO:0000269|PubMed:17461789}.,FUNCTION: Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. {ECO:0000269|PubMed:18799661}.,FUNCTION: Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates. {ECO:0000269|PubMed:18799661}. MISCELLANEOUS: In contrast to cv. Columbia, cv. Landsberg erecta has predominantly propyl C3 instead of butyl C4 Met-derived glucosinolates. ARA:AT1G63370-MONOMER;,ARA:AT1G63340-MONOMER;,MetaCyc:AT1G62560-MONOMER;,ARA:AT1G12130-MONOMER;,MetaCyc:AT1G65860-MONOMER;,ARA:AT1G12160-MONOMER;,MetaCyc:AT1G62570-MONOMER;,ARA:AT1G62620-MONOMER;,ARA:AT1G62580-MONOMER;,MetaCyc:AT1G12140-MONOMER;,ARA:AT1G62600-MONOMER;,MetaCyc:AT1G62540-MONOMER;,ARA:AT1G12200-MONOMER; 1.8.-.-,1.-.-.- 51239,51118,52688,53837,18768,52309,53271,52459,51256,53076,52104,51312,52103,52983,44742,44218,37933,39964,44257,42979,54983,50305 Flavin-containing monooxygenase FMO GS-OX-like 5 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 5),Putative flavin-containing monooxygenase FMO GS-OX-like 10 (EC 1.8.-.-) (Putative flavin-monooxygenase glucosinolate S-oxygenase-like 10),Flavin-containing monooxygenase FMO GS-OX3 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 3),Flavin-containing monooxygenase FMO GS-OX-like 6 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 6),Putative flavin-containing monooxygenase FMO GS-OX-like 11 (EC 1.8.-.-) (Putative flavin-monooxygenase glucosinolate S-oxygenase-like 11),Flavin-containing monooxygenase FMO GS-OX1 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 1) (Putative flavin-containing monooxygenase 3),Flavin-containing monooxygenase FMO GS-OX-like 1 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 1),Flavin-containing monooxygenase FMO GS-OX4 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 4),Flavin-containing monooxygenase FMO GS-OX-like 3 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 3),Flavin-containing monooxygenase FMO GS-OX-like 7 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 7),Flavin-containing monooxygenase FMO GS-OX5 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 5),Flavin-containing monooxygenase FMO GS-OX-like 4 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 4),Flavin-containing monooxygenase FMO GS-OX2 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase 2),Flavin-containing monooxygenase FMO GS-OX-like 2 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 2),Flavin-containing monooxygenase (EC 1.-.-.-) flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; 3-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080102]; 4-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080103]; 5-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080104]; 6-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080105]; 7-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080106]; 8-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080107]; flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; glucosinolate biosynthetic process [GO:0019761],flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; glucosinolate biosynthetic process [GO:0019761]; oxidation-reduction process [GO:0055114]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751],3-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080102]; 4-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080103]; 5-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080104]; 6-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080105]; 7-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080106]; 8-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080107]; flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; glucosinolate biosynthetic process from homomethionine [GO:0033506],flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; glucosinolate biosynthetic process [GO:0019761]; oxidation-reduction process [GO:0055114]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751],4-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080103]; 8-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080107]; flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; glucosinolate biosynthetic process [GO:0019761],flavin adenine dinucleotide binding [GO:0050660]; guanylate cyclase activity [GO:0004383]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; nitric oxide binding [GO:0070026]; oxygen binding [GO:0019825]; oxidation-reduction process [GO:0055114]; stomatal closure [GO:0090332],8-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080107]; flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; glucosinolate biosynthetic process [GO:0019761],vacuole [GO:0005773]; flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; oxidation-reduction process [GO:0055114],3-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080102]; 4-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080103]; 5-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080104]; 7-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080106]; 8-methylthiopropyl glucosinolate S-oxygenase activity [GO:0080107]; flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; glucosinolate biosynthetic process [GO:0019761],flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; defense response to fungus [GO:0050832]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661],flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661] TISSUE SPECIFICITY: Mainly expressed in leaves. Low levels in flowers and seeds. {ECO:0000269|PubMed:17461789}. locus:2031336;,locus:2203891;,locus:2201981;,locus:2009754;,locus:2202038;,locus:2203901;,locus:2203866;,locus:2203911;,locus:2201971;,locus:2203921;,locus:2203871;,locus:2201991; AT1G63370,AT1G63340,AT1G62560,AT1G12130,AT1G63390,AT1G65860,AT1G12160,AT1G62570,AT1G62620,AT1G62580,AT1G12140,AT1G62600,AT1G62540,AT1G12200 flavin-containing monooxygenase Flavin-containing monooxygenase (EC 1.-.-.-) Q336T9 Q336T9_ORYSJ LOC_Os10g40570 Os10g0553800 OSNPB_100553800 ENOG411DXB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 family protein, expressed (Os11g0289700 protein),Os04g0570500 protein (cDNA clone:J033126A02, full insert sequence),Os07g0482900 protein (Fragment) Q2R6X3,Q0JAX3,A0A0P0X631 Q2R6X3_ORYSJ,Q0JAX3_ORYSJ,A0A0P0X631_ORYSJ Os11g0289700 LOC_Os11g18570 Os11g0289700 OsJ_33657 OSNPB_110289700,Os04g0570500 Os04g0570500 OSNPB_040570500,Os07g0482900 OSNPB_070482900 ENOG411DXB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 NA NA NA NA NA NA NA ENOG411DXB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0670700 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os01g0357800 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6ESP7,Q5ZBJ9 Q6ESP7_ORYSJ,Q5ZBJ9_ORYSJ Os02g0670700 OSNPB_020670700 P0684A08.33,Os01g0357800 OSNPB_010357800 P0025H06.26 P0514H03.5 ENOG411DXB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os09g0255900 protein Q6K301 Q6K301_ORYSJ Os09g0255900 OSJNBb0066C12.44 OSNPB_090255900 ENOG411DQQQ MAP70.2,MAP70.1,MAP70-2 Q8L7S4,Q9C9X0,A0A1P8ATD2,A0A1P8ATC8 MP702_ARATH,MP701_ARATH,A0A1P8ATD2_ARATH,A0A1P8ATC8_ARATH Microtubule-associated protein 70-2 (AtMAP70-2) (70 kDa microtubule-associated protein 2),Microtubule-associated protein 70-1 (AtMAP70-1) (70 kDa microtubule-associated protein 1),Microtubule-associated proteins 70-2 FUNCTION: Plant-specific protein that interact with microtubules. {ECO:0000250}.,FUNCTION: Plant-specific protein that interact with microtubules. In association with MAP70.5, is essential for the normal banding pattern of secondary cell wall and for the proper development of xylem tracheary elements and wood formation. {ECO:0000269|PubMed:20399097}. 70207,69290,53285,77124 Microtubule-associated protein 70-2 (AtMAP70-2) (70 kDa microtubule-associated protein 2),Microtubule-associated protein 70-1 (AtMAP70-1) (70 kDa microtubule-associated protein 1),Microtubule-associated proteins 70-2 cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; cytoskeleton organization [GO:0007010],cortical microtubule, transverse to long axis [GO:0010005]; phragmoplast [GO:0009524]; spindle [GO:0005819]; microtubule binding [GO:0008017]; cell wall organization [GO:0071555]; cytoskeleton organization [GO:0007010]; plant-type cell wall biogenesis [GO:0009832]; xylem and phloem pattern formation [GO:0010051],microtubule binding [GO:0008017]; cytoskeleton organization [GO:0007010],integral component of membrane [GO:0016021]; microtubule binding [GO:0008017]; cytoskeleton organization [GO:0007010] locus:2826057;,locus:2200306; AT1G24764,AT1G68060 microtubule-associated protein Microtubule-associated protein 70-2 (AtMAP70-2) (70 kDa microtubule-associated protein 2),Microtubule-associated protein 70-3 (AtMAP70-3) (70 kDa microtubule-associated protein 3) Q6Z746,Q653N3 MP702_ORYSJ,MP703_ORYSJ MAP70.2 Os02g0736100 LOC_Os02g50320 P0487D09.19-1,MAP70.3 Os06g0251700 LOC_Os06g14080 P0431E05.19 FUNCTION: Plant-specific protein that interact with microtubules. {ECO:0000250}. ENOG411EF64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2T9 BZIP43,bZIP42 Q9FMC2,Q9LW45 BZP43_ARATH,Q9LW45_ARATH Basic leucine zipper 43 (AtbZIP43) (bZIP protein 43),Basic leucine-zipper 42 (Uncharacterized protein At3g30530) FUNCTION: Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. 19264,20302 Basic leucine zipper 43 (AtbZIP43) (bZIP protein 43),Basic leucine-zipper 42 (Uncharacterized protein At3g30530) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2166650;,locus:2092595; AT5G38800,AT3G30530 Transcription factor Os02g0728001 protein A3AAZ0 A3AAZ0_ORYSJ Os02g0728001 OsJ_08237 OSNPB_020728001 ENOG411E2T8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0296500 protein,Os09g0297900 protein (Fragment) Q0J2V2,A0A0P0XLX1 Q0J2V2_ORYSJ,A0A0P0XLX1_ORYSJ Os09g0296500 OSNPB_090296500,Os09g0297900 OSNPB_090297900 ENOG411E2T1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cyclin-dependent kinase F-2-like Os06g0693900 protein A0A0P0X092 A0A0P0X092_ORYSJ Os06g0693900 OSNPB_060693900 ENOG411E2T2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transmembrane ascorbate ferrireductase NA NA NA NA NA NA NA ENOG411E2T4 NRT3.2,NRT3.1 Q9SB67,Q9FGS5 NRT32_ARATH,NRT31_ARATH High-affinity nitrate transporter 3.2,High-affinity nitrate transporter 3.1 (Protein WOUND-RESPONSIVE 3) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Reduced growth on low-nitrate media. {ECO:0000269|PubMed:16415212, ECO:0000269|PubMed:17012411}. When grown on plates containing 250 ;M NO3- as the sole source of available N for 10 days mutant plants grew poorly shoot growth being particularly affected. Roots and shoots accumulated significantly less NO3- than wild type. Nitrate influx into roots of mutant plants was reduced. Sensitive to limited nitrate-A. Glass-2006 FUNCTION: Acts as a dual component transporter with NTR2.1. Required for high-affinity nitrate transport (By similarity). {ECO:0000250, ECO:0000269|PubMed:16415212}.,FUNCTION: Acts as a dual component transporter with NTR2.1. Required for high-affinity nitrate transport. Acts as a repressor of lateral root initiation. May be involved in targeting NRT2 proteins to the plasma membrane. {ECO:0000269|PubMed:16415212, ECO:0000269|PubMed:17012411, ECO:0000269|PubMed:17573350, ECO:0000269|PubMed:19704673}. 23304,23403 High-affinity nitrate transporter 3.2,High-affinity nitrate transporter 3.1 (Protein WOUND-RESPONSIVE 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706]; response to nitrate [GO:0010167],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706]; response to nitrate [GO:0010167]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Bearly detected in roots and shoots. {ECO:0000269|PubMed:16415212}.,TISSUE SPECIFICITY: Highly expressed in roots. Detected in shoots. {ECO:0000269|PubMed:16415212}. locus:2121969;,locus:2157737; AT4G24715,AT5G50200 Nitrate transporter High-affinity nitrate transporter-activating protein 2.1 (OsNAR2.1) Q6ZI50 NAR21_ORYSJ NAR2.1 Os02g0595900 LOC_Os02g38230 OJ1126_D09.33 OsJ_07366 FUNCTION: Acts as a dual component transporter with NTR2.1, NRT2.2 and NRT2.3. Required for high-affinity nitrate transport. Involved in the regulation of NRT2.1, NRT2.2 and NRT2.3 expression, and in both, HATS (high-affinity transport system) and LATS (low-affinity transport system) activities in plant roots. Imports nitrate with high affinity when expressed with NTR2.1, NTR2.2 or NTR2.3 in a heterologous system (Xenopus oocytes). {ECO:0000269|PubMed:21220781, ECO:0000269|PubMed:21486304}. MISCELLANEOUS: Plants silencing NAR2.1 have decreased nitrate uptake in roots under both high and low nitrate conditions. {ECO:0000305|PubMed:21220781}. ENOG411E2T6 Q9LSP5,A0A1I9LPQ2 Q9LSP5_ARATH,A0A1I9LPQ2_ARATH AT3g17020/K14A17_14 (Adenine nucleotide alpha hydrolases-like superfamily protein),Adenine nucleotide alpha hydrolases-like superfamily protein 17776,12714 AT3g17020/K14A17_14 (Adenine nucleotide alpha hydrolases-like superfamily protein),Adenine nucleotide alpha hydrolases-like superfamily protein plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; response to cold [GO:0009409],hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2086102; AT3G17020 Universal stress protein Os05g0157200 protein (cDNA clone:J013041K03, full insert sequence) Q75M01 Q75M01_ORYSJ Os05g0157200 OsJ_17188 OSNPB_050157200 P0676G05.12 ENOG411E2TI NDK1 P39207 NDK1_ARATH Nucleoside diphosphate kinase 1 (EC 2.7.4.6) (Nucleoside diphosphate kinase I) (NDK I) (NDP kinase I) (NDPK I) FUNCTION: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Plays a role in response to reactive oxygen species (ROS) stress. {ECO:0000269|PubMed:14581623}. MISCELLANEOUS: Plants over-expressing NDK1 are more tolerant to paraquat and have increased ability to eliminate exogenous H(2)O(2). {ECO:0000305|PubMed:14581623}. ARA:AT4G09320-MONOMER;MetaCyc:AT4G09320-MONOMER; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Pyrimidine metabolism (00240),Metabolic pathways (01100) 2.7.4.6 16500 Nucleoside diphosphate kinase 1 (EC 2.7.4.6) (Nucleoside diphosphate kinase I) (NDK I) (NDP kinase I) (NDPK I) ATP binding [GO:0005524]; metal ion binding [GO:0046872]; nucleoside diphosphate kinase activity [GO:0004550]; cellular response to hydrogen peroxide [GO:0070301]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; nucleoside diphosphate phosphorylation [GO:0006165]; UTP biosynthetic process [GO:0006228] AT4G09320 nucleoside diphosphate kinase Nucleoside diphosphate kinase 1 (EC 2.7.4.6) (Nucleoside diphosphate kinase I) (NDK I) (NDP kinase I) (NDPK I),Nucleoside diphosphate kinase (EC 2.7.4.6) Q07661,Q7XC37 NDK1_ORYSJ,Q7XC37_ORYSJ NDKR Os07g0492000 LOC_Os07g30970 OJ1218_C12.24 OsJ_023347 P0038F10.104,LOC_Os10g41410 Os10g0563700 OsJ_32481 OSJNBa0027P10.4 OSNPB_100563700 FUNCTION: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. This NDK is microtubule-associated. ENOG411E2TK Q8RXC0 Q8RXC0_ARATH Histone-lysine N-methyltransferase (Uncharacterized protein At4g26240) 23962 Histone-lysine N-methyltransferase (Uncharacterized protein At4g26240) integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2136819; AT4G26240 NA Os01g0559300 protein (cDNA clone:002-115-B10, full insert sequence) Q5JKQ9 Q5JKQ9_ORYSJ Os01g0559300 B1064G04.20 B1144D11.42 OsJ_02229 OSNPB_010559300 ENOG411E2TJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: flavin-containing amine oxidasedehydrogenase NA NA NA NA NA NA NA ENOG411E2TM RPS10 Q9LK61 RR10_ARATH 30S ribosomal protein S10, chloroplastic 20837 30S ribosomal protein S10, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; small ribosomal subunit [GO:0015935]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2089984; AT3G13120 30S ribosomal protein S10 NA NA NA NA NA NA NA ENOG411E2TN MCL19.6 Q9FNM0 Q9FNM0_ARATH 28 kDa heat/acid-stable phosphoprotein-like protein (Uncharacterized protein At5g46020) (Uncharacterized protein At5g46020; MCL19.6) R-ATH-6798695; 18977 28 kDa heat/acid-stable phosphoprotein-like protein (Uncharacterized protein At5g46020) (Uncharacterized protein At5g46020; MCL19.6) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634] locus:2161403; AT5G46020 heat- and acid-stable Os01g0752800 protein (Putative 28 kDa heat-and acid-stable phosphoprotein) Q5JMX3 Q5JMX3_ORYSJ Os01g0752800 Os01g0752800 OsJ_03480 OSNPB_010752800 P0435B05.27 ENOG411E2TA Q8L5Y2 Q8L5Y2_ARATH Basic-leucine zipper (BZIP) transcription factor family protein (Uncharacterized protein At1g19490) 52633 Basic-leucine zipper (BZIP) transcription factor family protein (Uncharacterized protein At1g19490) transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2016422; AT1G19490 BRLZ Os11g0154900 protein A0A0N7KSG4 A0A0N7KSG4_ORYSJ Os11g0154900 OSNPB_110154900 ENOG411E2TC MNA5.7 Q9FKQ4,Q84RJ3 Q9FKQ4_ARATH,Q84RJ3_ARATH At5g65340 (Gb|AAD22354.1) (Uncharacterized protein At5g65340),Uncharacterized protein At2g22460/F14M13.14 28129,27467 At5g65340 (Gb|AAD22354.1) (Uncharacterized protein At5g65340),Uncharacterized protein At2g22460/F14M13.14 locus:2168257;,locus:2041238; AT5G65340,AT2G22460 Protein of unknown function DUF617 NA NA NA NA NA NA NA ENOG411E2TE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411E2TD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pept_C1 NA NA NA NA NA NA NA ENOG411E2TY RPL27A,RPL27C,RPL27B Q9SKX8,P51419,Q8LCL3,A8MS28 RL271_ARATH,RL273_ARATH,RL272_ARATH,A8MS28_ARATH 60S ribosomal protein L27-1,60S ribosomal protein L27-3,60S ribosomal protein L27-2,Ribosomal L27e protein family R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15470,15608,15615,15035 60S ribosomal protein L27-1,60S ribosomal protein L27-3,60S ribosomal protein L27-2,Ribosomal L27e protein family cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2045467;,locus:2129575;,locus:2090434; AT2G32220,AT4G15000,AT3G22230 60S ribosomal protein L27 60S ribosomal protein L27 Q7XC31,Q6K4T1 Q7XC31_ORYSJ,Q6K4T1_ORYSJ Os10g0564300 LOC_Os10g41470 Os10g0564300 OsJ_32486 OSJNBa0027P10.10 OSNPB_100564300,Os02g0284600 Os02g0284600 OJ1115_D03.9 OsJ_06275 OSJNBa0018M09.22 OSNPB_020284600 ENOG411E2TZ Q3ECT8,P0CB17 CSPL4_ARATH,CSPLH_ARATH CASP-like protein 5C3 (AtCASPL5C3),CASP-like protein 5C2 (AtCASPL5C2) 16638,16824 CASP-like protein 5C3 (AtCASPL5C3),CASP-like protein 5C2 (AtCASPL5C2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] DEVELOPMENTAL STAGE: In floral buds, early expressed before the activation of the abscission zone and the expression of most of the genes known to be involved in floral organ shedding. {ECO:0000269|PubMed:24920445}. TISSUE SPECIFICITY: Expressed in the floral organ abscission zone and flower buds. {ECO:0000269|PubMed:24920445}. locus:504956317;,locus:2077962; AT1G49405,AT3G50810 CASP-like protein CASP-like protein 5C1 (OsCASPL5C1) Q10EJ2 CSPLU_ORYSJ Os03g0767900 LOC_Os03g55870 OsJ_12722 ENOG411E2TS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA atofp18 ofp18 Os01g0863800 protein Q94CV3 Q94CV3_ORYSJ Os01g0863800 Os01g0863800 OSNPB_010863800 P0423B08.25 ENOG411E2TR ALY1,MMN10.26 Q8L773,B3H4K4,F4JXE3,F4JXE5,F4JXE7 THO4A_ARATH,B3H4K4_ARATH,F4JXE3_ARATH,F4JXE5_ARATH,F4JXE7_ARATH THO complex subunit 4A (ALYREF homolog 1) (AtALY1),RNA-binding (RRM/RBD/RNP motifs) family protein FUNCTION: Export adapter involved in nuclear export of spliced and unspliced mRNA. {ECO:0000250}. RNA transport (03013),Spliceosome (03040),mRNA surveillance pathway (03015),Herpes simplex infection (05168) 25755,23579,25842,25556,18887 THO complex subunit 4A (ALYREF homolog 1) (AtALY1),RNA-binding (RRM/RBD/RNP motifs) family protein nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; RNA binding [GO:0003723]; mRNA transport [GO:0051028],RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:2168153; AT5G59950 RNA and export factor-binding protein Os03g0278300 protein (Fragment),Os03g0278300 protein (RNA and export factor-binding protein, putative, expressed) (cDNA clone:001-006-B02, full insert sequence) (cDNA clone:002-144-D05, full insert sequence) (cDNA clone:J013081B11, full insert sequence) Q0DSZ9,Q10N90,A0A0P0VWN2 Q0DSZ9_ORYSJ,Q10N90_ORYSJ,A0A0P0VWN2_ORYSJ Os03g0278300 OSNPB_030278300,Os03g0278300 LOC_Os03g17010 OsJ_10345 OSNPB_030278300 ENOG411E2TU CASP-like protein 2A1 Q8VZQ3,F4I7G8 CSPL3_ARATH,F4I7G8_ARATH CASP-like protein 2A1 (AtCASPL2A1),CASP-like protein 21878,12061 CASP-like protein 2A1 (AtCASPL2A1),CASP-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536]; response to karrikin [GO:0080167],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Expressed in the peripheral root cap and leaf epidermis. {ECO:0000269|PubMed:24920445}. locus:2020297; AT1G17200 CASP-like protein CASP-like protein 2A1 (OsCASPL2A1),Os04g0281900 protein Q0JEF7,A0A0P0W833 CSPLA_ORYSJ,A0A0P0W833_ORYSJ Os04g0281900 LOC_Os04g21320 OsJ_14118 OSJNBa0071G03.1 OSJNBa0094P09.18,Os04g0281900 OSNPB_040281900 ENOG411E2TT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain containing protein, expressed (Os03g0263000 protein) (cDNA clone:J023003E11, full insert sequence) Q84Q94 Q84Q94_ORYSJ LOC_Os03g15660 Os03g0263000 OJ1041F02.11 OsJ_10227 OSNPB_030263000 ENOG411E2TW MYB5 Q38850 MYB5_ARATH Transcription repressor MYB5 (AtM2) (Myb-related protein 5) (AtMYB5) Reduced seed coat mucilage. Irregularly shaped seed coat epidermal cells.,Trichomes are extremely reduced in size and have fewer branches. Also fewer trichomes form along the margins of leaves. Abnormal seed coat; Reduced mucilage extrusion from seeds-R. Parish-2009 FUNCTION: Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. 27793 Transcription repressor MYB5 (AtM2) (Myb-related protein 5) (AtMYB5) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; regulation of gene expression [GO:0010468]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; seed coat development [GO:0010214]; transcription, DNA-templated [GO:0006351]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. locus:2092820; AT3G13540 transcription Myb-related protein 1-like (Os01g0695900 protein) (cDNA clone:002-141-A12, full insert sequence) Q7F3D6 Q7F3D6_ORYSJ Os01g0695900 OJ1116_H09.3 OSNPB_010695900 ENOG411E043 Q9SD94 Q9SD94_ARATH Mitochondrial transcription termination factor family protein (Uncharacterized protein At5g07900) (Uncharacterized protein F13G24.100) 45846 Mitochondrial transcription termination factor family protein (Uncharacterized protein At5g07900) (Uncharacterized protein F13G24.100) chloroplast [GO:0009507]; membrane [GO:0016020]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2142763; AT5G07900 mTERF NA NA NA NA NA NA NA ENOG411E042 PFA-DSP4,PFA-DSP5,PFA-DSP1 Q9ZVN4,Q940L5,A0A1P8BBP7,A0A1P8ATV0,F4I780 Y1500_ARATH,Q940L5_ARATH,A0A1P8BBP7_ARATH,A0A1P8ATV0_ARATH,F4I780_ARATH Probable tyrosine-protein phosphatase At1g05000 (EC 3.1.3.48),AT4g03960/T24M8_4 (Contains similarity to C3HC4-type zinc fingers) (PN18) (Phosphotyrosine protein phosphatases superfamily protein) (Uncharacterized protein At4g03960/T24M8_4),Phosphotyrosine protein phosphatases superfamily protein FUNCTION: Possesses phosphotyrosine phosphatase activity in vitro. Hydrolyzes para-nitrophenyl phosphate in vitro (PubMed:21409566, PubMed:18433060). Hydrolyzes O-methylfluorescein phosphate in vitro (PubMed:21409566). Hydrolyzes polyphosphate and ATP in vitro (PubMed:18433060). Dephosphorylates the phosphoinositides PI(3,4,5)P3, PI(3,5)P2, but not PI(3)P, PI(3,4)P2 or PI(4,5)P2 (PubMed:17976645). {ECO:0000269|PubMed:17976645, ECO:0000269|PubMed:18433060, ECO:0000269|PubMed:21409566}.,FUNCTION: Probable tyrosine-protein phosphatase that acts as negative regulator of defense responses against the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000. {ECO:0000269|PubMed:22514699}. MISCELLANEOUS: Plants overexpressing DSP4 exhibit increased sensitivity to infection by the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000. {ECO:0000269|PubMed:22514699}. 3.1.3.48 24537,22640,11808,19718,28106 Probable tyrosine-protein phosphatase At1g05000 (EC 3.1.3.48),AT4g03960/T24M8_4 (Contains similarity to C3HC4-type zinc fingers) (PN18) (Phosphotyrosine protein phosphatases superfamily protein) (Uncharacterized protein At4g03960/T24M8_4),Phosphotyrosine protein phosphatases superfamily protein cytoplasm [GO:0005737]; protein tyrosine phosphatase activity [GO:0004725],cytoplasm [GO:0005737]; protein tyrosine phosphatase activity [GO:0004725]; regulation of defense response to bacterium [GO:1900424],protein tyrosine phosphatase activity [GO:0004725],phosphatase activity [GO:0016791]; protein tyrosine phosphatase activity [GO:0004725] locus:2136718;,locus:2205513; AT1G05000,AT4G03960 tyrosine specific protein phosphatase family protein Os12g0420300 protein A0A0P0Y9J1 A0A0P0Y9J1_ORYSJ Os12g0420300 OSNPB_120420300 ENOG411E041 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LURP-one-related 8 Os01g0817650 protein Q93WD5 Q93WD5_ORYSJ Os01g0817650 B1148D12.26 OSNPB_010817650 P0454H12.15 ENOG411E040 C0LGK4,A0A1P8B0Z5 Y2165_ARATH,A0A1P8B0Z5_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 99704,76824 Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] locus:2042599; AT2G16250 LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411E047 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein NA NA NA NA NA NA NA ENOG411E046 Q6GKU7 Q6GKU7_ARATH At1g64880 (Ribosomal protein S5 family protein) 60236 At1g64880 (Ribosomal protein S5 family protein) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; mitochondrial small ribosomal subunit [GO:0005763]; trans-Golgi network [GO:0005802]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2010896; AT1G64880 Ribosomal protein S5 Os02g0102400 protein (Fragment),Os02g0102400 protein (Putative ribosomal protein S5) (cDNA clone:J033117P11, full insert sequence) Q0E4S7,Q6YU81 Q0E4S7_ORYSJ,Q6YU81_ORYSJ Os02g0102400 Os02g0102400 OSNPB_020102400,Os02g0102400 B1370C05.28 OJ1435_F07.18 OSNPB_020102400 ENOG411E045 Q9FZE5,Q9FZE3,A0A1P8AWZ4 Q9FZE5_ARATH,Q9FZE3_ARATH,A0A1P8AWZ4_ARATH C2H2-like zinc finger protein (T1K7.2 protein) (Uncharacterized protein At1g26610),C2H2-like zinc finger protein (T1K7.4 protein) (Uncharacterized protein At1g26590),C2H2-like zinc finger protein 51131,40271,42468 C2H2-like zinc finger protein (T1K7.2 protein) (Uncharacterized protein At1g26610),C2H2-like zinc finger protein (T1K7.4 protein) (Uncharacterized protein At1g26590),C2H2-like zinc finger protein nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],nucleic acid binding [GO:0003676] locus:2197890;,locus:2197915; AT1G26610,AT1G26590 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E044 KCS21 Q9FH27,F4K4Q9 KCS21_ARATH,F4K4Q9_ARATH Probable 3-ketoacyl-CoA synthase 21 (KCS-21) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 21) (VLCFA condensing enzyme 21),3-ketoacyl-CoA synthase 21 PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT5G49070-MONOMER; 2.3.1.199 52558,35602 Probable 3-ketoacyl-CoA synthase 21 (KCS-21) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 21) (VLCFA condensing enzyme 21),3-ketoacyl-CoA synthase 21 integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:18465198}. locus:2155194; AT5G49070 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411E049 MED17 F4K460 MED17_ARATH Mediator of RNA polymerase II transcription subunit 17 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 73404 Mediator of RNA polymerase II transcription subunit 17 mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription, DNA-templated [GO:0006351] locus:2149294; AT5G20170 Subunit 17 of Mediator complex Mediator of RNA polymerase II transcription subunit 17 (Mediator complex subunit 17) Q2QLK7 Q2QLK7_ORYSJ Os12g0638600 MED17 LOC_Os12g44140 Os12g0638600 OSNPB_120638600 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364140}. ENOG411E048 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EH4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: leucine rich repeat NA NA NA NA NA NA NA ENOG411EH4R MDC12.24 Q9FMJ6 Q9FMJ6_ARATH RPM1-interacting protein 4 (RIN4) family protein (Similarity to NOI protein) 8838 RPM1-interacting protein 4 (RIN4) family protein (Similarity to NOI protein) locus:2162002; AT5G63270 Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411EH4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EH4U Q94AJ7 Q94AJ7_ARATH Uncharacterized protein At4g33666 8660 Uncharacterized protein At4g33666 locus:505006549; AT4G33666 NA NA NA NA NA NA NA NA ENOG411EH4J A0A1P8AVM6 A0A1P8AVM6_ARATH Transmembrane protein (Fragment) 17782 Transmembrane protein (Fragment) integral component of membrane [GO:0016021] GRF zinc finger NA NA NA NA NA NA NA ENOG411EH4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0332100 protein (cDNA clone:J023030G18, full insert sequence) Q6EQ70 Q6EQ70_ORYSJ Os09g0332100 OsJ_28923 OSJNBa0017I18.12 OSJNBb0095I04.18 OSNPB_090332100 ENOG411EH4E ATL62,ATL61 Q9LJL6,Q9LUL6 ATL62_ARATH,ATL61_ARATH Putative RING-H2 finger protein ATL62 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL62),Putative RING-H2 finger protein ATL61 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL61) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 15950,22859 Putative RING-H2 finger protein ATL62 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL62),Putative RING-H2 finger protein ATL61 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL61) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; negative regulation of short-day photoperiodism, flowering [GO:0048577]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2094108;,locus:2090980; AT3G19140,AT3G14320 zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EH4D Q9SD70,Q9ZUN0,Q9LM89,Q3ECQ9,Q9LIR1,Q9SD71,Q9LPH0,F4IB23,B3H799 FB195_ARATH,FB113_ARATH,FB12_ARATH,FB349_ARATH,FB182_ARATH,FB194_ARATH,FB57_ARATH,F4IB23_ARATH,B3H799_ARATH F-box protein At3g47030,Putative F-box protein At2g19630,Putative F-box protein At1g20657,Probable F-box protein At1g53815,Putative F-box protein At3g23960,Putative F-box protein At3g47020,Putative F-box protein At1g53550,F-box/associated interaction domain protein,F-box and associated interaction domains-containing protein 47310,34670,48016,26837,46434,35859,47483,25875,25835 F-box protein At3g47030,Putative F-box protein At2g19630,Putative F-box protein At1g20657,Probable F-box protein At1g53815,Putative F-box protein At3g23960,Putative F-box protein At3g47020,Putative F-box protein At1g53550,F-box/associated interaction domain protein,F-box and associated interaction domains-containing protein locus:2075666;,locus:2050419;,locus:1006230761;,locus:2076151;,locus:2075651;,locus:2203708;,locus:2824315; AT3G47030,AT2G19630,AT1G20657,AT1G53815,AT3G23960,AT3G47020,AT1G53550,AT1G43005 f-box family NA NA NA NA NA NA NA ENOG411EH48 F4M19_20,MXA21.14 Q9LEX8,Q9C6W8,Q9SJN9,Q9LX64,F4K5Q9,F4KA42,F4KFT8,F4HSS6 Y3093_ARATH,Q9C6W8_ARATH,Q9SJN9_ARATH,Q9LX64_ARATH,F4K5Q9_ARATH,F4KA42_ARATH,F4KFT8_ARATH,F4HSS6_ARATH Uncharacterized protein At3g60930, chloroplastic,Myosin heavy chain-like protein (Uncharacterized protein T12O21.9),Myosin heavy chain-like protein (Uncharacterized protein At2g15420),Myosin heavy chain-like protein (Uncharacterized protein F4M19_20),Uncharacterized protein,Myosin heavy chain-like protein 88668,93145,104573,80060,37913,106780,85006,106507 Uncharacterized protein At3g60930, chloroplastic,Myosin heavy chain-like protein (Uncharacterized protein T12O21.9),Myosin heavy chain-like protein (Uncharacterized protein At2g15420),Myosin heavy chain-like protein (Uncharacterized protein F4M19_20),Uncharacterized protein,Myosin heavy chain-like protein chloroplast [GO:0009507] locus:2195396;,locus:2047178;,locus:2083886;,locus:2143305;,locus:2176732;,locus:2148655;,locus:2034408; AT3G60930,AT1G32010,AT2G15420,AT3G42060,AT5G27890,AT5G38190,AT5G32590,AT1G20400 myosin heavy NA NA NA NA NA NA NA ENOG411EH43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0309001 protein,Os05g0372050 protein A0A0P0XE38,A0A0P0WLJ9 A0A0P0XE38_ORYSJ,A0A0P0WLJ9_ORYSJ Os08g0309001 OSNPB_080309001,Os05g0372050 OSNPB_050372050 ENOG411EH42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EH47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0248000 protein,Os10g0103633 protein A0A0P0X477,A0A0P0XR94 A0A0P0X477_ORYSJ,A0A0P0XR94_ORYSJ Os07g0248000 OSNPB_070248000,Os10g0103633 OSNPB_100103633 ENOG411E04C MORF8 Q9LKA5,Q58G44,A8MS36 MORF8_ARATH,Q58G44_ARATH,A8MS36_ARATH Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial (RNA editing-interacting protein 1),Uncharacterized protein DISRUPTION PHENOTYPE: Dwarf plants. {ECO:0000269|PubMed:22566615, ECO:0000269|PubMed:23818871}. FUNCTION: Involved in organellar RNA editing. Required for the processing of numerous RNA editing sites in mitochondria and plastids (PubMed:22566615, PubMed:23818871). Binds to the plastid RARE1 factor, a pentatricopeptide repeat-containing protein involved in RNA editing (PubMed:22566615). {ECO:0000269|PubMed:22566615, ECO:0000269|PubMed:23818871}. 42870,30114,25882 Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial (RNA editing-interacting protein 1),Uncharacterized protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; cytidine to uridine editing [GO:0016554]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397]; RNA modification [GO:0009451] locus:2086310;,locus:2009625; AT3G15000,AT1G53260 DAG protein Os09g0509000 protein (cDNA clone:001-206-A08, full insert sequence),Os09g0132600 protein (Putative plastid protein) (cDNA clone:006-206-E06, full insert sequence) Q0J0H6,Q6K456 Q0J0H6_ORYSJ,Q6K456_ORYSJ Os09g0509000 Os09g0509000 OSNPB_090509000,Os09g0132600 OsJ_28452 OSJNBa0095O23.31 OSNPB_090132600 P0406E03.5 ENOG411E04B T18D12_110 Q9M236,F4IZ56 Q9M236_ARATH,F4IZ56_ARATH Initiation factor 4F subunit (DUF1350) (Uncharacterized protein At3g43540) (Uncharacterized protein T18D12_110),Initiation factor 4F subunit (DUF1350) 40979,33350 Initiation factor 4F subunit (DUF1350) (Uncharacterized protein At3g43540) (Uncharacterized protein T18D12_110),Initiation factor 4F subunit (DUF1350) chloroplast [GO:0009507]; translation initiation factor activity [GO:0003743],translation initiation factor activity [GO:0003743] locus:2098199; AT3G43540 Protein of unknown function (DUF1350) Os09g0436900 protein (cDNA clone:002-117-F11, full insert sequence) B7F517 B7F517_ORYSJ Os09g0436900 OSNPB_090436900 ENOG411E04A ATL65 Q67YI6 ATL65_ARATH RING-H2 finger protein ATL65 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL65) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 46664 RING-H2 finger protein ATL65 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL65) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2085914; AT3G18930 RING-H2 finger protein Os10g0404100 protein Q338G7 Q338G7_ORYSJ Os10g0404100 LOC_Os10g26450 OsJ_29319 OSNPB_100404100 ENOG411E04G F4K1B1 RPAP2_ARATH Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC 3.1.3.16) (RNA polymerase II-associated protein 2 homolog) FUNCTION: Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation. {ECO:0000250}. 3.1.3.16 81058 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC 3.1.3.16) (RNA polymerase II-associated protein 2 homolog) cytosol [GO:0005829]; nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; metal ion binding [GO:0046872]; cell differentiation [GO:0030154]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940] locus:2148438; AT5G26760 RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation (By similarity) Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC 3.1.3.16) (RNA polymerase II-associated protein 2 homolog) Q6AVZ9 RPAP2_ORYSJ Os05g0134300 LOC_Os05g04370 OsJ_17019 P0519E07.4 FUNCTION: Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation. {ECO:0000250}. ENOG411E04F Q0WVR7 Q0WVR7_ARATH Pseudouridine synthase family protein (tRNA synthase-like protein) ARA:AT5G14460-MONOMER; 61488 Pseudouridine synthase family protein (tRNA synthase-like protein) mitochondrion [GO:0005739]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; mRNA pseudouridine synthesis [GO:1990481]; tRNA modification [GO:0006400] locus:2145708; AT5G14460 synthase Os05g0108000 protein (Putative tRNA synthase) Q65X25 Q65X25_ORYSJ Os05g0108000 Os05g0108000 OSJNBa0068N01.10 OSNPB_050108000 ENOG411E04E PHS1 Q75QN6,F4KE96 DPHS1_ARATH,F4KE96_ARATH Dual specificity protein phosphatase PHS1 (EC 3.1.3.16) (EC 3.1.3.48) (Protein PROPYZAMIDE-HYPERSENSITIVE 1),Dual specificity protein phosphatase family protein DISRUPTION PHENOTYPE: Embryonic lethality when homozygous in the phs1-2 allele (PubMed:15208393), but after several backcrossing, phs1-2 and other homozygous alleles (phs1-4 and phs1-5) are similar to the wild-type (PubMed:20224945). {ECO:0000269|PubMed:15208393, ECO:0000269|PubMed:20224945}. Embryonic lethal in homozygotes.,Hypersensitive to ABA in respect to seed germination and stomatal behaviour..,phs1-1 exhibits phenotypes indicative of compromised cortical microtubule functions such as left-handed helical growth of seedling roots defective anisotropic growth at low doses of microtubule-destabilizing drugs enhancement of the temperature-sensitive microtubule organization1-1 phenotype and less ordered and more fragmented cortical microtubule arrays compared with the wild type. FUNCTION: Probable dual specificity phosphatase that binds and dephosphorylates MPK18, modulating the organization and dynamics of cortical microtubules. Acts as negative regulator of abscisic acid (ABA) signaling during seed germination and light-induced stomata aperture. {ECO:0000269|PubMed:15208393, ECO:0000269|PubMed:16889651, ECO:0000269|PubMed:19392697}. 3.1.3.16; 3.1.3.48 104235,103121 Dual specificity protein phosphatase PHS1 (EC 3.1.3.16) (EC 3.1.3.48) (Protein PROPYZAMIDE-HYPERSENSITIVE 1),Dual specificity protein phosphatase family protein cytoplasm [GO:0005737]; kinase activity [GO:0016301]; phosphoprotein phosphatase activity [GO:0004721]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; abscisic acid-activated signaling pathway [GO:0009738]; cortical microtubule organization [GO:0043622]; regulation of gene expression [GO:0010468]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737],kinase activity [GO:0016301]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; cortical microtubule organization [GO:0043622]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:15208393, ECO:0000269|PubMed:20224945}. locus:2171691; AT5G23720 Actin-fragmin kinase catalytic Os01g0311500 protein (Putative PROPYZAMIDE-HTPERSENSITIVE 1),Os01g0311500 protein (Fragment) Q655C5,A0A0P0V1I6 Q655C5_ORYSJ,A0A0P0V1I6_ORYSJ Os01g0311500 B1011A07.6 OsJ_01481 OSNPB_010311500 P0551A11.33,Os01g0311500 OSNPB_010311500 ENOG411E04D MYB74,MYB102 Q9M0Y5,Q9LDR8 MYB74_ARATH,MY102_ARATH Transcription factor MYB74 (Myb-related protein 74) (AtMYB74),Transcription factor MYB102 (Myb-related protein 102) (AtMYB102) (Myb-related protein M4) (AtM4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plant show increased susceptibility to the herbivore Pieris rapae (white cabbage butterfly) feeding. {ECO:0000269|PubMed:19517001}. FUNCTION: Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}.,FUNCTION: Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. MISCELLANEOUS: Seeds over-expressing MYB74 display hypersensitivity to salt stress during seed germination. {ECO:0000269|PubMed:26139822}. 37397,40167 Transcription factor MYB74 (Myb-related protein 74) (AtMYB74),Transcription factor MYB102 (Myb-related protein 102) (AtMYB102) (Myb-related protein M4) (AtM4) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; defense response [GO:0006952]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in rosette leaves and cauline leaves. Expressed at low levels in roots, stems and siliques. {ECO:0000269|PubMed:26139822}.,TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. locus:2115708;,locus:2141231; AT4G05100,AT4G21440 Transcription factor Myb protein (Os07g0558100 protein) Q6Z414 Q6Z414_ORYSJ Os07g0558100 OSNPB_070558100 P0567H04.9 ENOG411E04K XLG1 O80462 XLG1_ARATH Extra-large guanine nucleotide-binding protein 1 (Extra-large GTP-binding protein 1) (Extra-large G-protein 1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17999646}. FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems (By similarity). Binds GTP with specificity. Plays a role in the root morphogenesis by regulation of the cell proliferation. {ECO:0000250, ECO:0000269|PubMed:17999646}. MISCELLANEOUS: Dark-grown xlg1-1 xlg2-1 xlg3-1 triple mutant plants showed markedly increased primary root length compared with wild-type plants. Dark-grown roots of the xlg triple mutants also showed altered sensitivity to sugars, abscisic acid (ABA) hyposensitivity and ethylene hypersensitivity, whereas seed germination in xlg triple mutants was hypersensitive to osmotic stress and ABA (PubMed:17999646). {ECO:0000305|PubMed:17999646}. R-ATH-112043;R-ATH-202040;R-ATH-2514859;R-ATH-399997;R-ATH-416476;R-ATH-416482;R-ATH-418555;R-ATH-434316; 98796 Extra-large guanine nucleotide-binding protein 1 (Extra-large GTP-binding protein 1) (Extra-large G-protein 1) heterotrimeric G-protein complex [GO:0005834]; nucleus [GO:0005634]; G-protein beta/gamma-subunit complex binding [GO:0031683]; G-protein coupled receptor binding [GO:0001664]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; signal transducer activity [GO:0004871]; adenylate cyclase-modulating G-protein coupled receptor signaling pathway [GO:0007188] TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in vascular tissues, root and shoot meristems and lateral root primordia. {ECO:0000269|PubMed:10394945, ECO:0000269|PubMed:17999646}. locus:2046738; AT2G23460 G_alpha Os12g0593000 protein,Os12g0593000 protein (Fragment) Q0IM71,A0A0P0YCH8 Q0IM71_ORYSJ,A0A0P0YCH8_ORYSJ Os12g0593000 Os12g0593000 OSNPB_120593000,Os12g0593000 OSNPB_120593000 ENOG411E04J P0C8R0 PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820 61298 Putative pentatricopeptide repeat-containing protein At5g43820 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2170907; AT5G43820 Pentatricopeptide repeat-containing protein Os02g0304800 protein B9F569 B9F569_ORYSJ Os02g0304800 OsJ_06387 OSNPB_020304800 ENOG411E04I LOG8,LOG9 Q84MC2,Q9XH06,A0A1P8BGT5,A0A1P8BH85,A0A1P8BH87 LOG8_ARATH,LOG9_ARATH,A0A1P8BGT5_ARATH,A0A1P8BH85_ARATH,A0A1P8BH87_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 (EC 3.2.2.n1) (LOG family protein At5g11950) (Protein LONELY GUY 8),Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG9 (EC 3.2.2.n1) (Protein LONELY GUY 9),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1),Putative lysine decarboxylase family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions; due to the redundancy with other LOG proteins. {ECO:0000269|PubMed:19837870}. FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000269|PubMed:19837870}.,FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}.,FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000256|RuleBase:RU363015}. ARA:GQT-2546-MONOMER;,ARA:GQT-1387-MONOMER; 3.2.2.n1 23831,16140,17967,18594,15083 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 (EC 3.2.2.n1) (LOG family protein At5g11950) (Protein LONELY GUY 8),Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG9 (EC 3.2.2.n1) (Protein LONELY GUY 9),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1),Putative lysine decarboxylase family protein cytosol [GO:0005829]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; protein homodimerization activity [GO:0042803]; cytokinin biosynthetic process [GO:0009691],nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691],hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691] TISSUE SPECIFICITY: Expressed in roots and shoots. Detected in the root quiescent center and vasculature, in cotyledons, hypocotyls, stems, leaves, stomata, axillary buds, flowers and fruit abscission zones. {ECO:0000269|PubMed:19837870}. locus:2143029;,locus:2180672; AT5G11950,AT5G26140 cytokinin riboside 5'-monophosphate phosphoribohydrolase Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 (EC 3.2.2.n1) (Protein LONELY GUY-like 1) Q8LR50 LOGL1_ORYSJ LOGL1 Os01g0708500 LOC_Os01g51210 OsJ_03202 P0510F09.28 FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}. ENOG411E04H MTERF18 Q9M219 MTEFH_ARATH Transcription termination factor MTEF18, mitochondrial (Mitochondrial transcription termination factor 18) (Protein SUPPRESSOR OF HOT1-4 1) DISRUPTION PHENOTYPE: Severe growth and developmental retardation. Dwarf plants. {ECO:0000269|PubMed:22942382}. FUNCTION: Transcription termination factor involved in the regulation of mitochondrial-encoded gene expression. Essential for normal plant growth and development. {ECO:0000269|PubMed:22942382}. 64562 Transcription termination factor MTEF18, mitochondrial (Mitochondrial transcription termination factor 18) (Protein SUPPRESSOR OF HOT1-4 1) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; mitochondrion organization [GO:0007005]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2103291; AT3G60400 mTERF Os07g0409400 protein Q8H405 Q8H405_ORYSJ P0492E07.119 Os07g0409400 OSNPB_070409400 ENOG411E04N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os08g0439600 protein,Os02g0695050 protein (Fragment),Os08g0422401 protein Q6Z9I5,A0A0P0VNP7,A0A0P0XFP8 Q6Z9I5_ORYSJ,A0A0P0VNP7_ORYSJ,A0A0P0XFP8_ORYSJ Os08g0439600 OsJ_27464 OSNPB_080439600 P0524F03.23,Os02g0695050 OSNPB_020695050,Os08g0422401 OSNPB_080422401 ENOG411E04M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os06g0181300 protein (cDNA, clone: J065163O14, full insert sequence) B7F8T8 B7F8T8_ORYSJ Os06g0181300 OSNPB_060181300 ENOG411E04S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triacylglycerol lipase Lipase A0A0P0WZI4 A0A0P0WZI4_ORYSJ Os06g0635300 OSNPB_060635300 ENOG411E04R BAT1 Q9SZ58 BRAT1_ARATH Brassinosteroid-related acyltransferase 1 (BR-related acyltransferase 1) (EC 2.3.1.-) (Protein DWARF AND ROUND LEAF 1) (Protein PIZZA) DISRUPTION PHENOTYPE: No obvious growth phenotype under standard growth conditions (PubMed:23071642, PubMed:23204503). The bat1-1 mutant exhibits longer stems before flowering, but reaches normal height after flowering, with larger inflorescence stems containing an increased number of vascular bundles (PubMed:23020607). {ECO:0000269|PubMed:23020607, ECO:0000269|PubMed:23071642, ECO:0000269|PubMed:23204503}. FUNCTION: Brassinosteroids (BR) acyltransferase with acyl-CoA ligase activity toward brassinolide (BL), castasterone (CS), typhasterol (TY), 6-deoxotyphasterol (6-deoxoTY), and 6-deoxocastasterone (6-deoxoCS) and thus converts them to corresponding lauroyl esters (PubMed:23071642, PubMed:23204503, PubMed:23020607). Regulates BR homeostasis and promotes BR-mediated cell growth regulation (PubMed:23071642, PubMed:23204503). Involved in vascular bundle development (PubMed:23020607). {ECO:0000269|PubMed:23020607, ECO:0000269|PubMed:23071642, ECO:0000269|PubMed:23204503}. PATHWAY: Plant hormone biosynthesis; brassinosteroid biosynthesis. {ECO:0000269|PubMed:23071642, ECO:0000269|PubMed:23204503}. 2.3.1.- 51145 Brassinosteroid-related acyltransferase 1 (BR-related acyltransferase 1) (EC 2.3.1.-) (Protein DWARF AND ROUND LEAF 1) (Protein PIZZA) endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; acyl-CoA ligase activity [GO:0003996]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; brassinosteroid biosynthetic process [GO:0016132]; phloem or xylem histogenesis [GO:0010087]; regulation of cell growth [GO:0001558]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741] DEVELOPMENTAL STAGE: In young seedlings, mainly observed in the vascular cylinder of cotyledons, leaves and hypocotyls. Accumulates also in root tips, lateral root initiation sites and the maturation zone of the primary root. In adult plants, present in the vasculature of the inflorescence stems, especially in phloem cells. {ECO:0000269|PubMed:23020607}. TISSUE SPECIFICITY: Highly expressed in young tissues and vascular bundles (PubMed:23020607). Mostly expressed in young leaves, primary roots, flowers (including petals and sepals), and siliques (PubMed:23204503). {ECO:0000269|PubMed:23020607, ECO:0000269|PubMed:23204503}. locus:2116757; AT4G31910 Transferase family NA NA NA NA NA NA NA ENOG411E04Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAP10 OSJNBb0039L24.21 protein (Os04g0534000 protein) (cDNA clone:J013073C02, full insert sequence) Q7XMJ7 Q7XMJ7_ORYSJ Os04g0534000 OsJ_15588 OSJNBb0039L24.21 OSNPB_040534000 ENOG411E04P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 4-1,Os04g0617900 protein Q7XSN6,A0A0P0WEU7 GL41_ORYSJ,A0A0P0WEU7_ORYSJ Os04g0617900 LOC_Os04g52720 OsJ_015483 OSJNBa0058K23.2 OSJNBa0093O08.12,Os04g0617900 OSNPB_040617900 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E04W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0778700 protein,Os06g0203700 protein (Fragment) Q6K7G8,A0A0P0WTP7 Q6K7G8_ORYSJ,A0A0P0WTP7_ORYSJ Os02g0778700 OJ1293_A01.7 OsJ_08595 OSNPB_020778700,Os06g0203700 OSNPB_060203700 ENOG411E04V CSL1 F4HRR0,F4HRQ9 F4HRR0_ARATH,F4HRQ9_ARATH CSL1 (Disease resistance protein (TIR class)),Disease resistance protein (TIR class) 89757,89629 CSL1 (Disease resistance protein (TIR class)),Disease resistance protein (TIR class) locus:2008500; AT1G61100 NA NA NA NA NA NA NA NA ENOG411E04U PAT10,AtPAT10 Q7XA86,A0A1I9LQT3 ZDH11_ARATH,A0A1I9LQT3_ARATH Protein S-acyltransferase 10 (EC 2.3.1.225) (Probable palmitoyltransferase At3g51390) (Zinc finger DHHC domain-containing protein At3g51390),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) DISRUPTION PHENOTYPE: Pleiotropic growth defects, including smaller leaves, dwarfism, and sterility. Hypersensitivity to salt stress and compromised pollen tube growth. {ECO:0000269|PubMed:23482856}. FUNCTION: S-acyltransferase involved in protein lipid modification. Catalyzes the palmitoylation of proteins peripheral or integral to the tonoplast. Required for the tonoplast localization of CBL2, CBL3 and CBL6, but not for the plasma membrane localization of CBL9, for the endosome localization of RABF1 or for the endomembrane localization of RABF2B. {ECO:0000269|PubMed:22968831, ECO:0000269|PubMed:23482856, ECO:0000269|Ref.5}. 2.3.1.225; 2.3.1.225 39228,38648 Protein S-acyltransferase 10 (EC 2.3.1.225) (Probable palmitoyltransferase At3g51390) (Zinc finger DHHC domain-containing protein At3g51390),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; protein-cysteine S-palmitoyltransferase activity [GO:0019706]; plant organ development [GO:0099402]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] DEVELOPMENTAL STAGE: Expressd in tapetal layer of developing anthers and then expression gradually increases in developing microspores and in mature pollen. {ECO:0000269|PubMed:23482856}. TISSUE SPECIFICITY: Expressed in mature embryos, embryo sacs, cotyledons, whole seedlings, hydathodes, guard cells, sites of lateral root initiation, root tips and phloem, but not in xylem. {ECO:0000269|PubMed:23482856}. locus:2081795; AT3G51390 zinc finger S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q0JB17,Q7XSQ0,Q2QQX2 Q0JB17_ORYSJ,Q7XSQ0_ORYSJ,Q2QQX2_ORYSJ Os04g0562000 Os04g0562000 OSNPB_040562000,Os04g0562000 OSJNBa0084K11.19 OSNPB_040562000,LOC_Os12g29560 Os12g0480000 OsJ_36085 OSNPB_120480000 ENOG411E04T EMB2759 Q6NM17,F4K973 Q6NM17_ARATH,F4K973_ARATH At5g63050 (Embryo defective 2759),Embryo defective 2759 Embryo defective; Globular-D. Meinke-2004 39297,38620 At5g63050 (Embryo defective 2759),Embryo defective 2759 integral component of membrane [GO:0016021] locus:2161932; AT5G63050 NA NA NA NA NA NA NA NA ENOG411E04Z ATHB-13 Q8LC03 ATB13_ARATH Homeobox-leucine zipper protein ATHB-13 (HD-ZIP protein ATHB-13) (Homeodomain transcription factor ATHB-13) FUNCTION: Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. 33342 Homeobox-leucine zipper protein ATHB-13 (HD-ZIP protein ATHB-13) (Homeodomain transcription factor ATHB-13) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon morphogenesis [GO:0048826]; leaf morphogenesis [GO:0009965]; primary root development [GO:0080022]; response to sucrose [GO:0009744]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. locus:2205075; AT1G69780 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX21 (HD-ZIP protein HOX21) (Homeodomain transcription factor HOX21) (OsHox21) Q8S7W9 HOX21_ORYSJ HOX21 Os03g0170600 LOC_Os03g07450 OSJNBa0091P11.3 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E04Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GATA transcription factor 9-like NA NA NA NA NA NA NA ENOG411E04X CYP74B2 B3LF83 Y74B2_ARATH Probable inactive linolenate hydroperoxide lyase (Cytochrome P450 74B2) (Hydroperoxide lyase 1) MetaCyc:MONOMER-1583; 42667 Probable inactive linolenate hydroperoxide lyase (Cytochrome P450 74B2) (Hydroperoxide lyase 1) chloroplast envelope [GO:0009941]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; fatty acid metabolic process [GO:0006631]; response to wounding [GO:0009611]; sterol metabolic process [GO:0016125] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:16258015, ECO:0000269|PubMed:9701595}. locus:2130145; AT4G15440 hydroperoxide lyase Hydroperoxide lyase (Os02g0110200 protein),Os02g0110200 protein (Fragment) Q6Z8Z7,A0A0P0VDT5 Q6Z8Z7_ORYSJ,A0A0P0VDT5_ORYSJ SLM1 Os02g0110200 OsJ_05060 OSNPB_020110200 P0501G04.9,Os02g0110200 OSNPB_020110200 ENOG411DQPD PIPC,MZN1.26 O65573,B3H7K1,B3H5F6 Y5872_ARATH,B3H7K1_ARATH,B3H5F6_ARATH SMR domain-containing protein At5g58720 (PRL1-interacting protein PIPC),Smr (Small MutS Related) domain-containing protein 56654,51497,55377 SMR domain-containing protein At5g58720 (PRL1-interacting protein PIPC),Smr (Small MutS Related) domain-containing protein locus:2178878; AT5G58720 Domain of unknown function (DUF1771) NA NA NA NA NA NA NA ENOG411EF6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor Os02g0578500 protein (Fragment) A0A0P0VKU1 A0A0P0VKU1_ORYSJ Os02g0578500 OSNPB_020578500 ENOG411EF6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411E51P LSM5 Q9FKB0 LSM5_ARATH Sm-like protein LSM5 (AtLSM5) (Protein SUPERSENSITIVE TO ABA AND DROUGHT 1) (AtSAD1) (U6 snRNA-associated Sm-like protein LSM5) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000305|PubMed:23221597}. Germination sensitive to ABA and salt-J. Zhu-2001 FUNCTION: Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression (PubMed:23221597, PubMed:23620288). Involved in the control of plant sensitivity to abscisic acid (ABA) and drought (PubMed:11740939). Functions with ABH1 as negative regulator of ABA signaling in guard cells (PubMed:12427994). Required for regulation of splicing efficiency of many stress-responsive genes under stress conditions (PubMed:24393432). {ECO:0000269|PubMed:11740939, ECO:0000269|PubMed:12427994, ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288, ECO:0000269|PubMed:24393432}. R-ATH-430039;R-ATH-72163; 9658 Sm-like protein LSM5 (AtLSM5) (Protein SUPERSENSITIVE TO ABA AND DROUGHT 1) (AtSAD1) (U6 snRNA-associated Sm-like protein LSM5) cytoplasm [GO:0005737]; Lsm1-7-Pat1 complex [GO:1990726]; spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; nuclear-transcribed mRNA catabolic process [GO:0000956]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2156589; AT5G48870 U6 snRNA-associated Sm-like protein Os05g0389300 protein (Putative snRNA associated protein) (cDNA clone:001-023-H03, full insert sequence) Q60E54 Q60E54_ORYSJ Os05g0389300 Os05g0389300 OsJ_05491 OSJNBa0073E05.22 OSNPB_050389300 ENOG411EF6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E51V Q9CA23 UFM1_ARATH Ubiquitin-fold modifier 1 FUNCTION: Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins. {ECO:0000250}. 9929 Ubiquitin-fold modifier 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein K69-linked ufmylation [GO:1990592] locus:2203246; AT1G77710 Ubiquitin-fold modifier Ubiquitin-fold modifier 1 Q94DM8 UFM1_ORYSJ Os01g0962400 LOC_Os01g73140 P0483G10.25 FUNCTION: Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins. {ECO:0000250}. ENOG411E51M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family NA NA NA NA NA NA NA ENOG411EF6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gemin6 protein NA NA NA NA NA NA NA ENOG411E51C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os02g0535300 protein Q6EPW8 Q6EPW8_ORYSJ Os02g0535300 B1136H02.23 OJ1112_G07.10 OSNPB_020535300 ENOG411EF6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTFX ATG13A,ATG13 Q9SCK0,F4IXZ6 AT13A_ARATH,F4IXZ6_ARATH Autophagy-related protein 13a (AtAPG13a),Autophagy-related protein 13 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. The double mutant plants atg13a-1 and atg13b-2, or atg13a-2 and atg13b-2 are hypersensitive to nitrogen or carbon starvation and show early senescence. {ECO:0000269|PubMed:21984698}. FUNCTION: Involved in autophagy in a nutritional condition dependent manner. The ATG1-ATG13 protein kinase complex regulates downstream events required for autophagosome enclosure and/or vacuolar delivery. Becomes a target of autophagy under nutrient starvation. Connects autophagy to plant nutritional status. {ECO:0000269|PubMed:21984698}. 66564,68459 Autophagy-related protein 13a (AtAPG13a),Autophagy-related protein 13 ATG1/ULK1 kinase complex [GO:1990316]; autophagosome [GO:0005776]; cytoplasmic vesicle [GO:0031410]; autophagy [GO:0006914]; protein transport [GO:0015031],ATG1/ULK1 kinase complex [GO:1990316]; autophagy [GO:0006914] locus:2114623; AT3G49590 Autophagy-related protein 13 NA NA NA NA NA NA NA ENOG411DTFD ABC1 Q9SBB2 ABC1_ARATH Protein ABC transporter 1, mitochondrial (ABC1At) (AtABC1) (EC 2.7.-.-) FUNCTION: Atypical kinase involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration. {ECO:0000269|PubMed:9852956}. PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. {ECO:0000250|UniProtKB:P27697}. 2.7.-.- 68627 Protein ABC transporter 1, mitochondrial (ABC1At) (AtABC1) (EC 2.7.-.-) mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; transferase activity [GO:0016740]; transporter activity [GO:0005215]; chlorophyll catabolic process [GO:0015996]; response to UV-B [GO:0010224]; ubiquinone biosynthetic process [GO:0006744] TISSUE SPECIFICITY: Expressed in stems, leaves, buds and flowers. {ECO:0000269|PubMed:9852956}. locus:2133357; AT4G01660 chaperone activity of bc1 complex-like Os01g0318700 protein (Putative ABC1 protein) (cDNA clone:001-129-A10, full insert sequence) Q655D1 Q655D1_ORYSJ Os01g0318700 Os01g0318700 B1153F04.16 OSNPB_010318700 P0028G04.40 ENOG411E2SM ZR3 F4JE34 F4JE34_ARATH Zim17-type zinc finger protein 25004 Zim17-type zinc finger protein mitochondrion [GO:0005739]; chaperone binding [GO:0051087]; zinc ion binding [GO:0008270]; protein folding [GO:0006457]; protein import into mitochondrial matrix [GO:0030150]; protein stabilization [GO:0050821] locus:1006230204; AT3G54826 zinc finger Os02g0819700 protein (Zinc finger-like) (cDNA clone:J013105L14, full insert sequence) (cDNA clone:J023069I01, full insert sequence) Q6K719 Q6K719_ORYSJ Os02g0819700 Os02g0819700 OJ1202_E07.24 OsJ_08897 OSNPB_020819700 P0474F11.5 ENOG411E2SA RSZ21 O81127 RSZ21_ARATH Serine/arginine-rich splicing factor RSZ21 (RS-containing zinc finger protein 21) (At-RSZ21) (At-RSZp21) (AtRSZ21) FUNCTION: Probably involved in intron recognition and spliceosome assembly. R-ATH-72163;R-ATH-72165; 21537 Serine/arginine-rich splicing factor RSZ21 (RS-containing zinc finger protein 21) (At-RSZ21) (At-RSZp21) (AtRSZ21) nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA splicing, via spliceosome [GO:0000398] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:9761791}. locus:2199837; AT1G23860 splicing factor Serine/arginine-rich splicing factor RSZ23 (RS-containing zinc finger protein 23) (Os-RSZ23) (Os-RSZp23) Q6K9C3 RZP23_ORYSJ RSZ23 RSZP23 Os02g0610600 LOC_Os02g39720 OJ1476_F05.20 FUNCTION: Involved in pre-mRNA splicing. In protoplast assay, enhances splicing efficiency of WAXY intron 1 and alters the selection of the 5'-splice sites by stimulating site 1 (proximal site). {ECO:0000269|PubMed:16339852}. ENOG411E2ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: myosin heavy chain Expressed protein (Myosin family protein, putative, expressed) (Os11g0424400 protein) (cDNA clone:J023110G02, full insert sequence) Q53JU4 Q53JU4_ORYSJ Os11g0424400 LOC_Os11g23220 Os11g0424400 OsJ_33553 OSNPB_110424400 ENOG411DXAF PEX11A Q9FZF1 PX11A_ARATH Peroxisomal membrane protein 11A (Peroxin-11A) (AtPEX11a) FUNCTION: Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}. 27677 Peroxisomal membrane protein 11A (Peroxin-11A) (AtPEX11a) integral component of peroxisomal membrane [GO:0005779]; peroxisome [GO:0005777]; identical protein binding [GO:0042802]; peroxisome fission [GO:0016559]; peroxisome organization [GO:0007031]; regulation of peroxisome size [GO:0044375] TISSUE SPECIFICITY: Expressed in developing siliques. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}. locus:2202430; AT1G47750 Peroxisomal membrane protein Peroxisomal membrane protein 11-3 (OsPEX11-3) (Peroxin-11-3),Peroxisomal membrane protein 11-2 (OsPEX11-2) (OsPEX11-5) (Peroxin-11-2) Q10MN2,Q10MN3 PX113_ORYSJ,PX112_ORYSJ PEX11-3 Os03g0302000 LOC_Os03g19010 OsJ_010110,PEX11-2 Os03g0301950 LOC_Os03g19000 FUNCTION: Involved in peroxisomal proliferation. {ECO:0000250}. ENOG411DXAE Q9LR67 PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial 74628 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2020808; AT1G03560 Pentatricopeptide repeat-containing protein Os07g0491500 protein (Fragment) A0A0P0X6C6 A0A0P0X6C6_ORYSJ Os07g0491500 OSNPB_070491500 ENOG411DXAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0033G05.10 protein (Os04g0644000 protein) Q7XTN2 Q7XTN2_ORYSJ Os04g0644000 Os04g0644000 OsJ_16387 OSJNBa0033G05.10 OSNPB_040644000 ENOG411EF27 F14P22.140 Q9M2G1 Q9M2G1_ARATH At3g58550 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (GPI-anchored protein) (Uncharacterized protein F14P22.140) 19291 At3g58550 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (GPI-anchored protein) (Uncharacterized protein F14P22.140) anchored component of membrane [GO:0031225] locus:2076406; AT3G58550 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EF24 Q8L7U4,F4JHJ0 Q8L7U4_ARATH,F4JHJ0_ARATH AT4g02450/T14P8_5 (HSP20-like chaperones superfamily protein),HSP20-like chaperones superfamily protein R-ATH-2162123;R-ATH-3371497;R-ATH-3371511;R-ATH-3371568; 25471,25342 AT4g02450/T14P8_5 (HSP20-like chaperones superfamily protein),HSP20-like chaperones superfamily protein cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; negative regulation of cytokinin-activated signaling pathway [GO:0080037]; positive regulation of gene expression [GO:0010628]; regulation of auxin polar transport [GO:2000012]; root meristem growth [GO:0010449] locus:2133269; AT4G02450 CS domain NA NA NA NA NA NA NA ENOG411EF20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family NA NA NA NA NA NA NA ENOG411EF2W F4IYD1 F4IYD1_ARATH C2H2 and C2HC zinc fingers superfamily protein 42631 C2H2 and C2HC zinc fingers superfamily protein nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2102092; AT3G01030 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EF2V MNF13.18 Q9FM35 Q9FM35_ARATH AT5G40630 protein (At5g40630) (Emb|CAB87775.1) (Ubiquitin-like superfamily protein) (Uncharacterized protein At5g40630/MNF13_150) 18110 AT5G40630 protein (At5g40630) (Emb|CAB87775.1) (Ubiquitin-like superfamily protein) (Uncharacterized protein At5g40630/MNF13_150) locus:2168788; AT5G40630 ubiquitin family NA NA NA NA NA NA NA ENOG411EF2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NA NA NA NA NA NA NA ENOG411EF2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (No apical meristem) protein Os07g0196500 protein,Os07g0196800 protein,Os07g0457100 protein,Os07g0195600 protein,Os07g0272700 protein Q6ZDP5,Q6Z394,Q84YR4,Q6ZDP3,Q6Z4J4 Q6ZDP5_ORYSJ,Q6Z394_ORYSJ,Q84YR4_ORYSJ,Q6ZDP3_ORYSJ,Q6Z4J4_ORYSJ Os07g0196500 OJ1715_A07.35 OsJ_23443 OSNPB_070196500 P0589E08.18,Os07g0196800 OsJ_23446 OSNPB_070196800 P0417F02.2 P0589E08.21,Os07g0457100 OsJ_24127 OSJNBa0027N13.125 OSNPB_070457100,Os07g0195600 OJ1715_A07.24 OsJ_23437 OSNPB_070195600 P0589E08.7,Os07g0272700 Os07g0272700 OsJ_23813 OSJNBb0002J01.26 OSJNBb0032G22.1 OSNPB_070272700 ENOG411EF2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF2P Q7XJK7 Q7XJK7_ARATH MADS-box protein AGL35 (MADS-box transcription factor family protein) 25123 MADS-box protein AGL35 (MADS-box transcription factor family protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2146774; AT5G26630 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EF2H Q9SKM4,Q9FVT6,Q9FVS5,O80617,F4I9N5,F4I871,F4HT77,F4I9N4 Q9SKM4_ARATH,Q9FVT6_ARATH,Q9FVS5_ARATH,O80617_ARATH,F4I9N5_ARATH,F4I871_ARATH,F4HT77_ARATH,F4I9N4_ARATH Disease resistance protein (TIR class), putative (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein RPS4, putative (Toll-Interleukin-Resistance (TIR) domain family protein),Toll-Interleukin-Resistance (TIR) domain family protein 23740,43339,18388,23795,22125,19615,42118,17191 Disease resistance protein (TIR class), putative (Toll-Interleukin-Resistance (TIR) domain family protein),Disease resistance protein RPS4, putative (Toll-Interleukin-Resistance (TIR) domain family protein),Toll-Interleukin-Resistance (TIR) domain family protein positive regulation of cellular defense response [GO:0010186]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; signal transduction [GO:0007165],signal transduction [GO:0007165],nucleus [GO:0005634]; positive regulation of plant-type hypersensitive response [GO:0034052]; signal transduction [GO:0007165] locus:2056971;,locus:2206495;,locus:2009405;,locus:2056715;,locus:2009415;,locus:2203776; AT2G03300,AT1G57670,AT1G57850,AT2G03030,AT1G57830,AT1G47370 domain-containing protein NA NA NA NA NA NA NA ENOG411EF2D ACIP1 Q940P0,Q8RXZ8,A0A1P8BDB2,F4KGP6 Q940P0_ARATH,Q8RXZ8_ARATH,A0A1P8BDB2_ARATH,F4KGP6_ARATH AT5g03660/F17C15_80 (Transcriptional activator (DUF662)) (Uncharacterized protein At5g03660),Ankyrin repeat 30A-like protein (DUF662) (At3g09980) (Uncharacterized protein At3g09980),Transcriptional activator (DUF662) 20186,20588,17627,17666 AT5g03660/F17C15_80 (Transcriptional activator (DUF662)) (Uncharacterized protein At5g03660),Ankyrin repeat 30A-like protein (DUF662) (At3g09980) (Uncharacterized protein At3g09980),Transcriptional activator (DUF662) plasma membrane [GO:0005886]; plasmodesma [GO:0009506],plasma membrane [GO:0005886]; microtubule binding [GO:0008017]; effector dependent induction by symbiont of host immune response [GO:0080185]; positive regulation of defense response to bacterium [GO:1900426] locus:2144618;,locus:2100083; AT5G03660,AT3G09980 Pfam:DUF662 NA NA NA NA NA NA NA ENOG411DXA9 MTOPVIB Q5Q0E6,A0A1P8AN41,A0A1P8AN43 TO6BL_ARATH,A0A1P8AN41_ARATH,A0A1P8AN43_ARATH Type 2 DNA topoisomerase 6 subunit B-like (Meiotic topoisomerase VIB-like) (AtMTOPVIB),Uncharacterized protein DISRUPTION PHENOTYPE: Sterility due to male and female gamete developmental defects. Strong reduction in bivalent formation at metaphase I caused by defects in meiotic double-strand breaks (DSB) formation. {ECO:0000269|PubMed:26917763}. FUNCTION: Component of a topoisomerase 6 complex specifically required for meiotic recombination. Together with SPO11 (SPO11-1 and SPO11-2), mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. The complex promotes relaxation of negative and positive supercoiled DNA and DNA decatenation through cleavage and ligation cycles. {ECO:0000269|PubMed:26917763}. 53344,37620,38296 Type 2 DNA topoisomerase 6 subunit B-like (Meiotic topoisomerase VIB-like) (AtMTOPVIB),Uncharacterized protein condensed chromosome [GO:0000793]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; protein binding, bridging [GO:0030674]; embryo sac morphogenesis [GO:0048314]; meiotic DNA double-strand break formation [GO:0042138]; pollen sperm cell differentiation [GO:0048235]; protein complex assembly [GO:0006461]; reciprocal meiotic recombination [GO:0007131],meiotic DNA double-strand break formation [GO:0042138] locus:2036525; AT1G60460 NA Os06g0708200 protein (Fragment) A0A0P0X136,A0A0P0X0S8 A0A0P0X136_ORYSJ,A0A0P0X0S8_ORYSJ Os06g0708200 OSNPB_060708200 ENOG411DXA8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family NA NA NA NA NA NA NA ENOG411DUXM TIP41L Q8VXY4 TIPRL_ARATH TIP41-like protein FUNCTION: May be involved in the regulation of the TOR signaling pathway. Indirectly activates the PP2A phosphatase via interaction with its suppressor TAP46. Could play a role in cytoskeleton functions. {ECO:0000250|UniProtKB:Q12199}. MISCELLANEOUS: Considered as a reference gene in term of expression stability throughout development. {ECO:0000303|PubMed:16166256}. 33075 TIP41-like protein cytosol [GO:0005829] DEVELOPMENTAL STAGE: Expressed throughout all development stages. {ECO:0000269|PubMed:16166256}. TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16166256}. locus:2116169; AT4G34270 TIP41-like Os03g0760600 protein (TIP41-like family protein, expressed) (cDNA clone:J033131F13, full insert sequence) Q94HA2 Q94HA2_ORYSJ LOC_Os03g55270 Os03g0760600 OsJ_12672 OSJNBb0048A17.5 OSNPB_030760600 ENOG411DUXJ F2P24.13 Q9C5I9,Q9FVW6,B3H7N1,A0A1P8B9I4 Q9C5I9_ARATH,Q9FVW6_ARATH,B3H7N1_ARATH,A0A1P8B9I4_ARATH Alpha/beta-Hydrolases superfamily protein (Putative lipase),Alpha/beta-Hydrolases superfamily protein (Lysophospholipase isolog, putative) (Putative lipase) (Putative lipase; 4162-5963) (Putative lysophospholipase isolog),Alpha/beta-Hydrolases superfamily protein ARA:AT1G77420-MONOMER;,ARA:AT5G16120-MONOMER; 39284,42819,41586,43011 Alpha/beta-Hydrolases superfamily protein (Putative lipase),Alpha/beta-Hydrolases superfamily protein (Lysophospholipase isolog, putative) (Putative lipase) (Putative lipase; 4162-5963) (Putative lysophospholipase isolog),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787],chloroplast [GO:0009507]; membrane [GO:0016020]; lipase activity [GO:0016298]; lipid metabolic process [GO:0006629],cytosol [GO:0005829]; membrane [GO:0016020]; plasmodesma [GO:0009506]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629] locus:2031427;,locus:2181392; AT5G16120,AT1G77420 monoglyceride lipase-like Hydrolase, alpha/beta fold family protein, putative, expressed (Os10g0135600 protein) (cDNA clone:J013090G24, full insert sequence) (cDNA clone:J013091N22, full insert sequence),Os01g0688200 protein (Fragment) Q33B71,A0A0P0V6T5 Q33B71_ORYSJ,A0A0P0V6T5_ORYSJ Os10g0135600 LOC_Os10g04620 Os10g0135600 OsJ_30647 OSNPB_100135600,Os01g0688200 OSNPB_010688200 ENOG411EHWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HMG (high mobility group) box NA NA NA NA NA NA NA ENOG411EHWI MGN6.6 Q8L9Q1,A0A1P8BBX7 Q8L9Q1_ARATH,A0A1P8BBX7_ARATH Uncharacterized protein 13088,17561 Uncharacterized protein locus:2164072; AT5G53710 NA NA NA NA NA NA NA NA ENOG411EHWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: dna-directed rna polymerase NA NA NA NA NA NA NA ENOG411EHWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0188600 protein Q6ZHR7 Q6ZHR7_ORYSJ Os02g0188600 OJ1145_F01.18 OsJ_05683 OSNPB_020188600 ENOG411EI99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EI98 B3H6F0,B3H784,B3H465 B3H6F0_ARATH,B3H784_ARATH,B3H465_ARATH Transmembrane protein 22083,21962,21777 Transmembrane protein integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ubiquitin ligase complex [GO:0000151]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:4515102984; AT2G43261 NA NA NA NA NA NA NA NA ENOG411EI95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EI91 MAF19.10,MAF19.11 Q9FNQ5,Q9FNQ4,A0A1P8BHH9,F4K1Z8 Q9FNQ5_ARATH,Q9FNQ4_ARATH,A0A1P8BHH9_ARATH,F4K1Z8_ARATH Gb|AAF26970.1,Gb|AAF26970.1 (Zinc ion binding protein),Flavonoid protein,Uncharacterized protein 25088,17249,17061,25579 Gb|AAF26970.1,Gb|AAF26970.1 (Zinc ion binding protein),Flavonoid protein,Uncharacterized protein locus:2159406;,locus:2159396; AT5G61110,AT5G61100 NA NA NA NA NA NA NA NA ENOG411EI90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain NA NA NA NA NA NA NA ENOG411EI9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0160300 protein,Os01g0880700 protein Q0E3Q5,A0A0P0VB60 Q0E3Q5_ORYSJ,A0A0P0VB60_ORYSJ Os02g0160300 Os02g0160300 OsJ_05468 OSNPB_020160300,Os01g0880700 OSNPB_010880700 ENOG411EI9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0620700 protein A3BDM5 A3BDM5_ORYSJ Os06g0620700 OsJ_21999 OSNPB_060620700 ENOG411EI9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9D Q9LX24 Q9LX24_ARATH At5g10040 (Transmembrane protein) (Uncharacterized protein T31P16_30) 9767 At5g10040 (Transmembrane protein) (Uncharacterized protein T31P16_30) integral component of membrane [GO:0016021]; anaerobic respiration [GO:0009061] locus:2184083; AT5G10040 NA NA NA NA NA NA NA NA ENOG411EI9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbon-nitrogen hydrolase NA NA NA NA NA NA NA ENOG411EI9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1070) NA NA NA NA NA NA NA ENOG411EI9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD dependent oxidoreductase Os12g0267100 protein A0A0P0Y8W0 A0A0P0Y8W0_ORYSJ Os12g0267100 OSNPB_120267100 ENOG411EI9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0618400 protein Q0ILV4 Q0ILV4_ORYSJ Os12g0618400 Os12g0618400 OSNPB_120618400 ENOG411EI9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0372600 protein Q6H4I7 Q6H4I7_ORYSJ P0599F09.10 Os09g0372600 OSNPB_090372600 ENOG411EI9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411EI9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0032F06.9 protein (Os04g0681700 protein),Expressed protein (Os12g0636600 protein) (Os12g0636700 protein) (cDNA clone:002-175-D01, full insert sequence) Q7XPX2,Q2QLM2 Q7XPX2_ORYSJ,Q2QLM2_ORYSJ OSJNBa0032F06.9 Os04g0681700 OSNPB_040681700,Os12g0636700 LOC_Os12g43990 Os12g0636600 OsJ_36998 OSNPB_120636700 ENOG411EI9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: dolichyl pyrophosphate phosphatase 1 NA NA NA NA NA NA NA ENOG411EI9P LCR63,LCR61,LCR62,LCR60 P82777,P82775,P82776,P82774 DF173_ARATH,DF171_ARATH,DF170_ARATH,DF172_ARATH Defensin-like protein 173 (Low-molecular-weight cysteine-rich protein 63) (Protein LCR63),Defensin-like protein 171 (Low-molecular-weight cysteine-rich protein 61) (Protein LCR61),Putative defensin-like protein 170 (Putative low-molecular-weight cysteine-rich protein 62) (Protein LCR62),Defensin-like protein 172 (Low-molecular-weight cysteine-rich protein 60) (Protein LCR60) 8392,8182,8187,8914 Defensin-like protein 173 (Low-molecular-weight cysteine-rich protein 63) (Protein LCR63),Defensin-like protein 171 (Low-molecular-weight cysteine-rich protein 61) (Protein LCR61),Putative defensin-like protein 170 (Putative low-molecular-weight cysteine-rich protein 62) (Protein LCR62),Defensin-like protein 172 (Low-molecular-weight cysteine-rich protein 60) (Protein LCR60) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023363;,locus:1009023366;,locus:1009023189;,locus:1009023195; AT4G30067,AT4G30064,AT2G29045,AT2G20208 low-molecular-weight cysteine-rich 60 NA NA NA NA NA NA NA ENOG411EI9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family NA NA NA NA NA NA NA ENOG411E3X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Scavenger mRNA decapping enzyme C-term binding NA NA NA NA NA NA NA ENOG411E3X1 MNF13.13 Q45GG8,A0A1P8BCI3,A0A1P8BCH8,F4KIP2 Q45GG8_ARATH,A0A1P8BCI3_ARATH,A0A1P8BCH8_ARATH,F4KIP2_ARATH Bromodomain testis-specific protein 32578,24407,28321,36760 Bromodomain testis-specific protein locus:2168743; AT5G40600 NA NA NA NA NA NA NA NA ENOG411E3X9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0537500 protein A0A0N7KM84 A0A0N7KM84_ORYSJ Os06g0537500 OSNPB_060537500 ENOG411E3XE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0703800 protein Q75IA3 Q75IA3_ORYSJ OSJNBa0004L11.7 Os03g0703800 OSNPB_030703800 ENOG411E3XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3XB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphotransfer protein Histidine-containing phosphotransfer protein 1 (OsAHP1) (OsHP1) (OsHP2) (OsHPt1) (OsHpt2) Q6VAK3 OHP1_ORYSJ AHP1 HP2 HPT1 OHP1 Os08g0557700 LOC_Os08g44350 OJ1150_A11.26 OsJ_28261 DISRUPTION PHENOTYPE: Dwarf, wide leaf and small grain phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay (By similarity). Functions as positive regulator of the cytokinin signaling pathway. May play a regulatory role in salt and drought tolerance during plant development (PubMed:24578505). {ECO:0000250|UniProtKB:Q8L9T7, ECO:0000269|PubMed:24578505}. MISCELLANEOUS: Plant silencing simultaneously OHP1 and OHP2 exhibit phenotypes for a deficiency in cytokinin signaling, including dwarfism with reduced internode lengths, enhanced lateral root growth, early leaf senescence, and reduced tiller numbers and fertility. {ECO:0000269|PubMed:24578505}. ENOG411E3XC ZHD1,HB22 Q9SB61,A0A1P8B5J0 ZHD2_ARATH,A0A1P8B5J0_ARATH Zinc-finger homeodomain protein 2 (AtZHD2) (Homeobox protein 22) (AtHB-22) (Protein MATERNAL EFFECT EMBRYO ARREST 68),Homeobox protein 22 DISRUPTION PHENOTYPE: Arrested at early embryo stages. {ECO:0000269|PubMed:15634699}. FUNCTION: Essential protein. Putative transcription factor. 24023,25366 Zinc-finger homeodomain protein 2 (AtZHD2) (Homeobox protein 22) (AtHB-22) (Protein MATERNAL EFFECT EMBRYO ARREST 68),Homeobox protein 22 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. locus:2121989; AT4G24660 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411E3XQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: WD repeat domain 19 NA NA NA NA NA NA NA ENOG411DW85 IREG1,IREG2 O80905,F4KGN5,A0A1P8AXC7,A0A1P8BGV1,A0A1P8BGU8 S40A1_ARATH,S40A2_ARATH,A0A1P8AXC7_ARATH,A0A1P8BGV1_ARATH,A0A1P8BGU8_ARATH Solute carrier family 40 member 1 (Ferroportin-1) (Iron-regulated transporter 1) (AtIREG1),Solute carrier family 40 member 2 (Ferroportin-2) (Iron-regulated transporter 2) (AtIREG2),Iron regulated 1,Iron regulated 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants have increased sensitivity to nickel when grown in an iron-deficient environment. {ECO:0000269|PubMed:16790430}. Complete loss of cobalt accumulation-M. Guerinot-2009,Sensitive to cobalt and nickel; Elevated cobalt levels in shoots-M. Guerinot-2009 FUNCTION: May be involved in iron transport and iron homeostasis. {ECO:0000250}.,FUNCTION: Vacuolar transporter that is involved in the transport of excess nickel into the vacuole under iron deficiency, increasing cellular tolerance to nickel under iron deficiency stress response. {ECO:0000269|PubMed:16790430}. MISCELLANEOUS: Plants over-expressing IREG2 show increased tolerance to elevated concentrations of nickel. {ECO:0000305|PubMed:16790430}. 58204,57094,41800,60207,51711 Solute carrier family 40 member 1 (Ferroportin-1) (Iron-regulated transporter 1) (AtIREG1),Solute carrier family 40 member 2 (Ferroportin-2) (Iron-regulated transporter 2) (AtIREG2),Iron regulated 1,Iron regulated 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron ion transmembrane transporter activity [GO:0005381]; cobalt ion transport [GO:0006824],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; cobalt ion transmembrane transporter activity [GO:0015087]; iron ion transmembrane transporter activity [GO:0005381]; cellular response to iron ion starvation [GO:0010106]; cobalt ion homeostasis [GO:0055068]; cobalt ion transport [GO:0006824]; iron ion transport [GO:0006826]; nickel cation transmembrane transport [GO:0035444]; nickel cation transport [GO:0015675]; transition metal ion transport [GO:0000041],integral component of membrane [GO:0016021]; iron ion transmembrane transporter activity [GO:0005381] locus:2057222;,locus:2142649; AT2G38460,AT5G03570 solute carrier family 40 member Solute carrier family 40 member 1 Q5Z922 S40A1_ORYSJ Os06g0560000 LOC_Os06g36450 P0528E12.13 FUNCTION: May be involved in iron transport and iron homeostasis. {ECO:0000250}. ENOG411E8DZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0714700 protein Q5Z9Q6 Q5Z9Q6_ORYSJ Os06g0714700 OSNPB_060714700 P0481E08.6 ENOG411E8DY Q6DBG1,A0A1P8B8R8,A0A1P8B8R1 Q6DBG1_ARATH,A0A1P8B8R8_ARATH,A0A1P8B8R1_ARATH At4g24265 (Homeobox protein),Homeobox protein 15977,16680,16308 At4g24265 (Homeobox protein),Homeobox protein DNA binding [GO:0003677] locus:504955338; AT4G24265 NA NA NA NA NA NA NA NA ENOG411E8DX LCR41,LCR42,LCR18 P82756,P82757,P82732 DF188_ARATH,DF187_ARATH,DF184_ARATH Putative defensin-like protein 188 (Putative low-molecular-weight cysteine-rich protein 41) (Protein LCR41),Putative defensin-like protein 187 (Putative low-molecular-weight cysteine-rich protein 42) (Protein LCR42),Putative defensin-like protein 184 (Putative low-molecular-weight cysteine-rich protein 18) (Protein LCR18) 9137,8668,8491 Putative defensin-like protein 188 (Putative low-molecular-weight cysteine-rich protein 41) (Protein LCR41),Putative defensin-like protein 187 (Putative low-molecular-weight cysteine-rich protein 42) (Protein LCR42),Putative defensin-like protein 184 (Putative low-molecular-weight cysteine-rich protein 18) (Protein LCR18) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023272;,locus:1009023248;,locus:1009023292; AT3G04943,AT3G23165,AT3G04945 low-molecular-weight cysteine-rich 18 NA NA NA NA NA NA NA ENOG411E8DS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0142400 protein (cDNA clone:001-102-D06, full insert sequence) Q75KL6 Q75KL6_ORYSJ Os05g0142400 OJ1264_A04.11 OsJ_17075 OSNPB_050142400 ENOG411E8DR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8DQ T24C20_60 Q9STS0 Q9STS0_ARATH At3g48180 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) (Uncharacterized protein At3g48180) (Uncharacterized protein T24C20_60) 8161 At3g48180 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) (Uncharacterized protein At3g48180) (Uncharacterized protein T24C20_60) transferase activity [GO:0016740] locus:2100454; AT3G48180 Inherit from KOG: DNA crosslink repair NA NA NA NA NA NA NA ENOG411E8DP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein OSJNBa0043L09.16 protein (Os04g0634800 protein) (cDNA clone:002-133-B08, full insert sequence) Q7XQT1 Q7XQT1_ORYSJ Os04g0634800 OsJ_16305 OSJNBa0043L09.16 OSNPB_040634800 ENOG411E8DW ROPGEF10 Q1KS66,A0A1P8BDP4,A0A1P8BDV2,A0A1P8BDS2 ROGFA_ARATH,A0A1P8BDP4_ARATH,A0A1P8BDV2_ARATH,A0A1P8BDS2_ARATH Rop guanine nucleotide exchange factor 10 (AtRopGEF10) (Rho of plants guanine nucleotide exchange factor 10),ROP uanine nucleotide exchange factor 10 FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. {ECO:0000250}. 56523,42049,58858,43636 Rop guanine nucleotide exchange factor 10 (AtRopGEF10) (Rho of plants guanine nucleotide exchange factor 10),ROP uanine nucleotide exchange factor 10 Rho guanyl-nucleotide exchange factor activity [GO:0005089] locus:2180781; AT5G19560 ROP uanine nucleotide exchange factor 10 NA NA NA NA NA NA NA ENOG411E8DV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin-dependent kinase inhibitor Cyclin-dependent kinase inhibitor 3 (KIP-related protein 3),Cyclin-dependent kinase inhibitor (Os11g0614800 protein) Q2R185,E1CPV3 KRP3_ORYSJ,E1CPV3_ORYSJ KRP3 Os11g0614800 LOC_Os11g40030,Orysa;KRP3 Os11g0614800 OSNPB_110614800 ENOG411E8DU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411E8DT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0252250 protein (Os01g0252300 protein) (cDNA, clone: J080068A10, full insert sequence) Q5NBC9 Q5NBC9_ORYSJ Os01g0252300 Os01g0252250 OsJ_01121 OSNPB_010252300 P0434D08.35 P0503G09.2 ENOG411E8DK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8DJ CLE13 Q6NMF0 CLE13_ARATH CLAVATA3/ESR (CLE)-related protein 13 [Cleaved into: CLE13p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16407446, ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:16902140}. 11952 CLAVATA3/ESR (CLE)-related protein 13 [Cleaved into: CLE13p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in seedlings, roots, flowers, stems and apex, and, to a lower extent, in leaves and siliques. {ECO:0000269|PubMed:12602871}. locus:504956232; AT1G73965 Inherit from euNOG: clavata3 esr-related NA NA NA NA NA NA NA ENOG411E8DI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8DH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8DN Q94K21 Q94K21_ARATH Uncharacterized protein unannotated coding sequence from BAC F9L11 7464 Uncharacterized protein unannotated coding sequence from BAC F9L11 anaerobic respiration [GO:0009061] locus:505006164; AT1G33055 NA Os04g0581700 protein B9FC51 B9FC51_ORYSJ Os04g0581700 OsJ_15902 OSNPB_040581700 ENOG411E8DM SMR4 Q1JPP8 SMR4_ARATH Cyclin-dependent protein kinase inhibitor SMR4 (Protein SIAMESE-RELATED 4) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle (PubMed:26546445). Acts as a potent cell cycle inhibitor (PubMed:24399300). {ECO:0000269|PubMed:24399300, ECO:0000269|PubMed:26546445}. 8324 Cyclin-dependent protein kinase inhibitor SMR4 (Protein SIAMESE-RELATED 4) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] TISSUE SPECIFICITY: Expressed in root meristems after induction. {ECO:0000269|PubMed:24399300}. locus:2185213; AT5G02220 NA NA NA NA NA NA NA NA ENOG411E8DC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0453100 protein Q6ZKQ3 Q6ZKQ3_ORYSJ Os08g0453100 OJ1117_F10.29 OsJ_27542 OSNPB_080453100 ENOG411E8DB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: embryonic flower NA NA NA NA NA NA NA ENOG411E8DA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: pyridine nucleotide-disulphide oxidoreductase domain 1 NA NA NA NA NA NA NA ENOG411E8DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E8DF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8DE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8D9 Q9LQZ8,A0A1P8AQQ4 Q9LQZ8_ARATH,A0A1P8AQQ4_ARATH F10A5.23 (Glycine-rich protein),Glycine-rich protein 17191,19508 F10A5.23 (Glycine-rich protein),Glycine-rich protein locus:2005609; AT1G75550 Inherit from NOG: glycine-rich protein NA NA NA NA NA NA NA ENOG411E8D8 MUF9.14 Q940T4,F4JYY5 Q940T4_ARATH,F4JYY5_ARATH AT5g60400/muf9_50,Uncharacterized protein 7429,10401 AT5g60400/muf9_50,Uncharacterized protein locus:2175133; AT5G60400 Inherit from euNOG: at5g60400 (e NA NA NA NA NA NA NA ENOG411E8D3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8D2 MKP11.13 Q9FFI3 Q9FFI3_ARATH AT5g17280/MKP11_13 (Oxidoreductase-like protein, amino-terminal protein) 14918 AT5g17280/MKP11_13 (Oxidoreductase-like protein, amino-terminal protein) locus:2167180; AT5G17280 Oxidoreductase-like protein N-terminal Os09g0530900 protein (cDNA clone:001-104-D01, full insert sequence) Q652K8 Q652K8_ORYSJ Os09g0530900 OJ1254_E07.6 OsJ_30104 OSNPB_090530900 ENOG411E8D1 Q9XIM6 Q9XIM6_ARATH Expressed protein (Stress-induced protein) (Uncharacterized protein At2g15960) 8972 Expressed protein (Stress-induced protein) (Uncharacterized protein At2g15960) locus:2044646; AT2G15960 NA NA NA NA NA NA NA NA ENOG411E8D0 AGP22,AGP41 Q9FK16,Q8L9T8 AGP22_ARATH,Q8L9T8_ARATH Arabinogalactan peptide 22 (AG-peptide 22),Arabinogalactan protein 41 (At5g24105) FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. {ECO:0000305}. 6672,6574 Arabinogalactan peptide 22 (AG-peptide 22),Arabinogalactan protein 41 (At5g24105) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2154232;,locus:1006230578; AT5G53250,AT5G24105 Protein of unknown function (DUF1070) NA NA NA NA NA NA NA ENOG411E8D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyllase Os02g0286700 protein (Fragment) A0A0P0VHR9 A0A0P0VHR9_ORYSJ Os02g0286700 OSNPB_020286700 ENOG411E8D6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8D5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0516600 protein (cDNA clone:002-146-E01, full insert sequence) Q7EZ85 Q7EZ85_ORYSJ P0686C03.141 Os08g0516600 OSNPB_080516600 ENOG411E8D4 Q1PEN6,F4IWC6 Q1PEN6_ARATH,F4IWC6_ARATH Gag-Pol-related retrotransposon family protein 46321,45906 Gag-Pol-related retrotransposon family protein locus:2092990;,locus:2092950; AT3G21000,AT3G20980 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EAVU ABCG27 Q9FT51 AB27G_ARATH ABC transporter G family member 27 (ABC transporter ABCG.27) (AtABCG27) (Probable white-brown complex homolog protein 28) (AtWBC28) 81771 ABC transporter G family member 27 (ABC transporter ABCG.27) (AtABCG27) (Probable white-brown complex homolog protein 28) (AtWBC28) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] AT3G52310 ABC-2 type transporter NA NA NA NA NA NA NA ENOG411E3Z8 Q9T096 YIPL6_ARATH Protein yippee-like At4g27745 12081 Protein yippee-like At4g27745 metal ion binding [GO:0046872] locus:1009023354; AT4G27745 Yippee-like Protein yippee-like Q0INB8,Q2R2Q4 Q0INB8_ORYSJ,Q2R2Q4_ORYSJ Os12g0484700 Os12g0484700 OSNPB_120484700,Os11g0551800 LOC_Os11g35020 Os11g0551800 OsJ_34236 OSNPB_110551800 ENOG411E3Z9 WRKY23 O22900 WRK23_ARATH Probable WRKY transcription factor 23 (WRKY DNA-binding protein 23) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 37685 Probable WRKY transcription factor 23 (WRKY DNA-binding protein 23) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to auxin [GO:0009733]; response to nematode [GO:0009624]; transcription, DNA-templated [GO:0006351] locus:2065124; AT2G47260 Transcription factor NA NA NA NA NA NA NA ENOG411E3Z6 dl4560c O23550 O23550_ARATH At4g17060 (FRIGIDA interacting protein 2) (Uncharacterized protein AT4g17060) (Uncharacterized protein dl4560c) 34434 At4g17060 (FRIGIDA interacting protein 2) (Uncharacterized protein AT4g17060) (Uncharacterized protein dl4560c) nucleus [GO:0005634]; vacuole [GO:0005773] locus:3439226; AT4G17060 Inherit from KOG: Transcription factor NA NA NA NA NA NA NA ENOG411E3Z7 DMP7 Q5XV67 DMP7_ARATH Protein DMP7 (AtDMP7) FUNCTION: Involved in membrane remodeling. {ECO:0000250|UniProtKB:Q9LVF4}. 22318 Protein DMP7 (AtDMP7) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; abscission [GO:0009838]; dehiscence [GO:0009900]; endomembrane system organization [GO:0010256] DEVELOPMENTAL STAGE: Accumulates in tissues undergoing dehiscence and abscission. {ECO:0000269|PubMed:20712629}. TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, siliques and roots, especially in the vasculature. {ECO:0000269|PubMed:20712629}. locus:504955516; AT4G28485 Protein of unknown function (DUF679) NA NA NA NA NA NA NA ENOG411E3Z4 ZFP8,GIS P93751,Q84WI0 ZFP8_ARATH,GIS_ARATH Zinc finger protein 8,Zinc finger protein GIS (Protein GLABROUS INFLORESCENCE STEMS) DISRUPTION PHENOTYPE: Reduced trichome production on cauline leaves, stem branches and sepals. {ECO:0000269|PubMed:17507408}.,DISRUPTION PHENOTYPE: Reduced trichome production on cauline leaves, stem internodes and branches, and sepals. {ECO:0000269|PubMed:16679458, ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:22210898}. Less or no increase in trichome production after GA treatment on the third cauline leaves.,Significant reduction in trichome density on upper cauline leaves and branches.,The overall response of cauline leaves and flowers to cytokinin treatments was similar in gis and control plants.,Trichome production on the rosette leaves of double mutants was similar to that of spy-3 and wild-type plants although abaxial trichomes appeared slightly later on rosette leaves as in gis seedlings that were established on GA-containing medium. Double mutants had stem trichomes that were mostly three-branched as in the gis mutants. Severely reduced trichome density on upper cauline leaves and inflorescences-P. Broun-2007,Abnormal trichomes on inflorescence organs; Heterozygotes: Intermediate phenotype-P. Broun-2006 FUNCTION: Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to GIS2 (PubMed:17507408). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:24808098}.,FUNCTION: Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA) (PubMed:16679458, PubMed:17507408). Mediates the induction of GL1 expression by GA in inflorescence organs and is antagonized in its action by the DELLA repressor GAI. Acts upstream of the trichome initiation regulators GL1 and GL3, and downstream of the GA signaling repressor SPINDLY (SPY) (PubMed:16679458). Does not play a significant role in the cytokinin response (PubMed:17507408). Controls trichome branching through GA signaling (PubMed:22210898, PubMed:23825141). Acts downstream of the key regulator STICHEL (STI) in an endoreduplication-independent pathway (PubMed:22210898). Controls trichome cell division indirectly by acting downstream of a key endoreduplication regulator SIAMESE (SIM) (PubMed:23825141). {ECO:0000269|PubMed:16679458, ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:22210898, ECO:0000269|PubMed:23825141}. MISCELLANEOUS: Seeds over-expressing ZFP8 show decreased sensitivity to inhibition of germination by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}.,MISCELLANEOUS: Plants over-expressing GIS have delayed shoot maturation and flowering, and a strong production of trichome on the inflorescence. {ECO:0000305|PubMed:16679458}. 29571,28457 Zinc finger protein 8,Zinc finger protein GIS (Protein GLABROUS INFLORESCENCE STEMS) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; cytokinin-activated signaling pathway [GO:0009736]; gibberellic acid mediated signaling pathway [GO:0009740]; multicellular organism development [GO:0007275]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026],nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; gibberellic acid mediated signaling pathway [GO:0009740]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351]; trichome branching [GO:0010091]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Expressed in developing cauline leaves. {ECO:0000269|PubMed:17507408}.,TISSUE SPECIFICITY: Expressed in inflorescence meristems, floral meristems and stem epidermis. {ECO:0000269|PubMed:16679458}. locus:2064579;,locus:2095883; AT2G41940,AT3G58070 nucleic acid binding transcription factor zinc ion binding NA NA NA NA NA NA NA ENOG411E3Z5 Q0WUZ1 Q0WUZ1_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At4g17940) 30075 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At4g17940) locus:2141030; AT4G17940 NA Expressed protein (Os10g0576600 protein) (cDNA clone:006-203-D09, full insert sequence) (cDNA clone:006-302-C07, full insert sequence) (cDNA clone:006-311-C05, full insert sequence) (cDNA clone:J023113L04, full insert sequence),Expressed protein (Os10g0576600 protein) (cDNA clone:001-009-A12, full insert sequence) Q7XBV4,Q336P1 Q7XBV4_ORYSJ,Q336P1_ORYSJ Os10g0576600 LOC_Os10g42610 Os10g0576600 OsJ_32577 OSJNBa0027L23.7 OSNPB_100576600,Os10g0576600 LOC_Os10g42610 OSNPB_100576600 ENOG411E3Z2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L32 NA NA NA NA NA NA NA ENOG411E3Z3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2781) Expressed protein (Os03g0646400 protein) (cDNA clone:002-141-F06, full insert sequence) Q10G23 Q10G23_ORYSJ LOC_Os03g44450 Os03g0646400 OsJ_11895 OSNPB_030646400 ENOG411E3Z0 Q1PFN1,Q6E2A0,F4HRC7 Q1PFN1_ARATH,Q6E2A0_ARATH,F4HRC7_ARATH Nucleolar histone methyltransferase-related protein 12351,14482,15204 Nucleolar histone methyltransferase-related protein histone-lysine N-methyltransferase activity [GO:0018024] locus:1005716678; AT1G45248 Ubiquitin-binding WIYLD domain NA NA NA NA NA NA NA ENOG411E3Z1 CLPT2 Q8GW78 CLPT2_ARATH ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic DISRUPTION PHENOTYPE: No visible phenotype (PubMed:21266658, PubMed:25921872). Clpt1 and clpt2 double mutants show delayed development, reduced plant growth, and virescent, serrated leaves (PubMed:25921872). Clpt1 and clpt2 double mutants are seedling lethal under autotrophic conditions (PubMed:21266658). {ECO:0000269|PubMed:21266658, ECO:0000269|PubMed:25921872}. FUNCTION: Accessory protein regulating the assembly of the plastidial Clp protease system (PubMed:21266658, PubMed:25921872). CLPT1 first binds to the heptameric P-ring containing the CLP3-6 subunits followed by CLPT2, and only then does the P-ring combine with the R-ring composed of the clpP1 and CLPR1-4 subunits (PubMed:21266658). Once the core complex is fully assembled, it then associates to the CLPC chaperone partner to form the functional protease (PubMed:21266658). CLPT2 and CLPT1 are partially redundant (PubMed:25921872). {ECO:0000269|PubMed:21266658, ECO:0000269|PubMed:25921872}. 26561 ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid stroma [GO:0009532]; protein histidine kinase binding [GO:0043424]; protein metabolic process [GO:0019538] locus:2118066; AT4G12060 Clp amino terminal domain NA NA NA NA NA NA NA ENOG411E3ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0249300 protein A0A0P0Y8L5 A0A0P0Y8L5_ORYSJ Os12g0249300 OSNPB_120249300 ENOG411E3ZX EM1,lea Q07187,Q42489 EM1_ARATH,Q42489_ARATH Em-like protein GEA1 (EM1),Late embryogenic abundant protein (Stress induced protein) FUNCTION: It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development. 16612,12165 Em-like protein GEA1 (EM1),Late embryogenic abundant protein (Stress induced protein) cytosol [GO:0005829]; response to abscisic acid [GO:0009737] DEVELOPMENTAL STAGE: First appears in immature seeds and is maximally expressed in dry seeds. TISSUE SPECIFICITY: In seeds only. Specifically located to vascular bundles in the cotyledon and axis of the dry seed. Also found in the epiderm and outer layers of the cortex in the embryo axis. locus:2074383; AT3G51810 late embryogenesis abundant NA NA NA NA NA NA NA ENOG411E3ZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl transferase domain NA NA NA NA NA NA NA ENOG411E3ZV Q1H557,B3H4H4,Q2V3S1,A0A1I9LMJ3 Q1H557_ARATH,B3H4H4_ARATH,Q2V3S1_ARATH,A0A1I9LMJ3_ARATH At3g27340 (Myb domain protein),Myb domain protein 16082,15086,10528,13183 At3g27340 (Myb domain protein),Myb domain protein locus:2086676; AT3G27340 Protein of unknown function (DUF971) Os02g0197800 protein (cDNA clone:006-304-E12, full insert sequence),Os01g0904300 protein (Fragment) Q6H743,Q0JGU2 Q6H743_ORYSJ,Q0JGU2_ORYSJ Os02g0197800 Os02g0197800 OJ1524_D08.33 OsJ_05762 OSNPB_020197800 P0026H03.8,Os01g0904300 Os01g0904300 OSNPB_010904300 ENOG411E3ZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E3ZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3ZU O48807,O65376 O48807_ARATH,O65376_ARATH DUF506 family protein (DUF506) (F2401.16) (Uncharacterized protein At1g62420/F24O1_44) (Uncharacterized protein At1g62425),At1g12030 (F12F1.10 protein) (Phosphoenolpyruvate carboxylase, putative (DUF506)) (Uncharacterized protein At1g12030) 32219,33658 DUF506 family protein (DUF506) (F2401.16) (Uncharacterized protein At1g62420/F24O1_44) (Uncharacterized protein At1g62425),At1g12030 (F12F1.10 protein) (Phosphoenolpyruvate carboxylase, putative (DUF506)) (Uncharacterized protein At1g12030) locus:2027134;,locus:2008870; AT1G62420,AT1G12030 Protein of unknown function (DUF506) Os02g0720400 protein A0A0P0VNW3 A0A0P0VNW3_ORYSJ Os02g0720400 OSNPB_020720400 ENOG411E3ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411E3ZS Q3EDD7,Q8GWT5,Q84W04 CNIH2_ARATH,CNIH3_ARATH,CNIH4_ARATH Probable protein cornichon homolog 2,Protein cornichon homolog 3,Protein cornichon homolog 4 15379,16442,16436 Probable protein cornichon homolog 2,Protein cornichon homolog 3,Protein cornichon homolog 4 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2034655;,locus:2015514;,locus:2034660; AT1G12340,AT1G62880,AT1G12390 protein cornichon homolog Os06g0136500 protein Q0DET3 Q0DET3_ORYSJ Os06g0136500 Os06g0136500 OSNPB_060136500 ENOG411E3ZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain BURP domain-containing protein 4 (OsBURP04),Os02g0289000 protein (cDNA clone:002-116-D04, full insert sequence),Os02g0288600 protein (Fragment) Q0E1Z0,Q6K898,A0A0P0VHR6 BURP4_ORYSJ,Q6K898_ORYSJ,A0A0P0VHR6_ORYSJ BURP4 Os02g0288600 LOC_Os02g18690 OJ1756_H07.37 OJ1756_H07.38 OsJ_06300,Os02g0289000 Os02g0289000 OJ1756_H07.46 OSNPB_020289000,Os02g0288600 OSNPB_020288600 ENOG411E3ZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35EXOc NA NA NA NA NA NA NA ENOG411E3ZN Q9ZU12 Q9ZU12_ARATH Avr9/Cf-9 rapidly elicited protein (F5F19.20 protein) (Uncharacterized protein At1g52140) 23165 Avr9/Cf-9 rapidly elicited protein (F5F19.20 protein) (Uncharacterized protein At1g52140) locus:2034071; AT1G52140 Inherit from NOG: Avr9 Cf-9 rapidly elicited protein 146 NA NA NA NA NA NA NA ENOG411E3ZM CML42 Q9SVG9 CML42_ARATH Calcium-binding protein CML42 (Calmodulin-like protein 42) DISRUPTION PHENOTYPE: Trichomes with increased branch number. {ECO:0000269|PubMed:19720824}. Abnormal trichome morphology; Increased trichome branching-W. Snedden-2009 FUNCTION: Probable calcium sensor that binds calcium in vitro. Involved in the regulation of trichome branching. {ECO:0000269|PubMed:16240180, ECO:0000269|PubMed:19720824}. R-ATH-6798695; 21147 Calcium-binding protein CML42 (Calmodulin-like protein 42) calcium ion binding [GO:0005509]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Expressed in seedling shoots, roots, rosette leaves and flowers. Expressed in the leaf trichome support cells. {ECO:0000269|PubMed:16240180, ECO:0000269|PubMed:19720824}. locus:2121489; AT4G20780 calcium-binding protein Probable calcium-binding protein CML27 (Calmodulin-like protein 27),Probable calcium-binding protein CML32 (Calmodulin-like protein 32),Probable calcium-binding protein CML24 (Calmodulin-like protein 24) Q10LX4,Q84UL5,Q7XHW4 CML27_ORYSJ,CML32_ORYSJ,CML24_ORYSJ CML27 Os03g0331700 LOC_Os03g21380,CML32 Os08g0144100 LOC_Os08g04890 P0571B09.102 P0665F09.116,CML24 Os07g0681400 LOC_Os07g48340 OsJ_024595 OSJNBa0008J01.24 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E3ZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os02g0204000 protein Q6Z6E3 Q6Z6E3_ORYSJ Os02g0204000 Os02g0204000 OSNPB_020204000 P0544H11.15 ENOG411E3ZK PMEI9,T4C9.230 Q9SI72,Q9STH2 PMEI9_ARATH,Q9STH2_ARATH Pectinesterase inhibitor 9 (Pectin methylesterase inhibitor 9) (AtPMEI9),Pectin methylesterase inhibitor 1 (Uncharacterized protein At4g12390) (Uncharacterized protein At4g12390; T4C9.230) (Uncharacterized protein T4C9.230) FUNCTION: Pectin methylesterase (PME) inhibitor that probably targets root-expressed PME, regulates de-methylesterification of pectins in roots and affects root growth. {ECO:0000269|PubMed:28034952}. 22684,23078 Pectinesterase inhibitor 9 (Pectin methylesterase inhibitor 9) (AtPMEI9),Pectin methylesterase inhibitor 1 (Uncharacterized protein At4g12390) (Uncharacterized protein At4g12390; T4C9.230) (Uncharacterized protein T4C9.230) apoplast [GO:0048046]; enzyme inhibitor activity [GO:0004857],plasmodesma [GO:0009506]; enzyme inhibitor activity [GO:0004857] TISSUE SPECIFICITY: Highly expressed in roots and etiolated hypocotyls. Expressed in seedlings, leaves, stems, siliques, floral buds and mature seeds. {ECO:0000269|PubMed:28034952}. locus:2026237;,locus:2139094; AT1G62770,AT4G12390 pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E3ZH Q9LZX2 Q9LZX2_ARATH AT5g01740/T20L15_10 (At5g01740) (Nuclear transport factor 2 (NTF2) family protein) (Uncharacterized protein T20L15_10) 18428 AT5g01740/T20L15_10 (At5g01740) (Nuclear transport factor 2 (NTF2) family protein) (Uncharacterized protein T20L15_10) locus:2181072; AT5G01740 wound-induced protein Os05g0342100 protein (cDNA clone:002-176-A02, full insert sequence) Q5W6N6 Q5W6N6_ORYSJ Os05g0342100 OJ1314_A05.5 OSNPB_050342100 P0015F11.1 ENOG411E3ZI YLMG1-2,YLMG1-1 Q9SUE0,Q9SRS3 YMG12_ARATH,YMG11_ARATH YlmG homolog protein 1-2, chloroplastic (AtYLMG1-2) (YGGT family protein YLMG1-2),YlmG homolog protein 1-1, chloroplastic (AtYLMG1-1) (YGGT family protein YLMG1-1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18593701}. Larger but fewer chloroplasts than WT. FtsZ ring formation is perturbed and consequently chloroplast division.,Young emerging leaves and the basal part of expanding leaves exhibited a palegreen phenotype. As leaves matured the leaf color shifted to green with no obvious difference compared to the wild-type leaves. The shape and size of chloroplasts in expanding leaves were similar to those in the wild type. However in the basal part of expanding leaf of the antisense line chloroplasts were pale and smaller than those of the wild type. Interestingly nucleoids were concentrated in a few large structures in both the tip and basal part of the expanding leaves of the antisense line. Embryo defective; Cotyledon-D. Meinke-2003 FUNCTION: Not required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Not functionally involved in the pathway for covalent binding of the c-type heme to cytochrome b6. {ECO:0000269|PubMed:18593701}.,FUNCTION: Required for the proper distribution of nucleoids in chloroplasts. The nucleoid partitioning by YLMG1-1 may be related to chloroplast division processes. {ECO:0000269|PubMed:20359373}. MISCELLANEOUS: Plant over-expressing YLMG1-1 have impaired chloroplast division leading to reduced number and enlarged chloroplasts in mesophyll cells. Plants silencing YLMG1-1 show a pale green phenotype in young emerging leaves and the basal part of expanding leaves. {ECO:0000269|PubMed:20359373}. 23705,24922 YlmG homolog protein 1-2, chloroplastic (AtYLMG1-2) (YGGT family protein YLMG1-2),YlmG homolog protein 1-1, chloroplastic (AtYLMG1-1) (YGGT family protein YLMG1-1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid membrane [GO:0042651]; chloroplast fission [GO:0010020]; nucleoid organization [GO:0090143] locus:2132907;,locus:2079656; AT4G27990,AT3G07430 YGGT family Os07g0185300 protein (cDNA clone:J023076B10, full insert sequence) Q6ZLG2 Q6ZLG2_ORYSJ Os07g0185300 OJ1339_B08.2 OSNPB_070185300 ENOG411E3ZF P0C8Q9,Q9M8K0,A0A1I9LLD3,A0A1P8BBG9 Y5902_ARATH,Q9M8K0_ARATH,A0A1I9LLD3_ARATH,A0A1P8BBG9_ARATH Uncharacterized protein At5g19025,At3g06180 (F28L1.12 protein) (Ribosomal protein L34e superfamily protein),Ribosomal protein L34e superfamily protein 28485,26467,22117,28957 Uncharacterized protein At5g19025,At3g06180 (F28L1.12 protein) (Ribosomal protein L34e superfamily protein),Ribosomal protein L34e superfamily protein cytosolic large ribosomal subunit [GO:0022625]; integral component of membrane [GO:0016021]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412],integral component of membrane [GO:0016021]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:6530298239;,locus:2082430; AT5G19025,AT3G06180 Inherit from KOG: Pentatricopeptide repeat-containing protein Os05g0393200 protein A0A0N7KKQ4 A0A0N7KKQ4_ORYSJ Os05g0393200 OSNPB_050393200 ENOG411E3ZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling NA NA NA NA NA NA NA ENOG411E3ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os02g0758800 protein (Putative Blue copper protein) (cDNA clone:J023100A12, full insert sequence) Q6Z7U7 Q6Z7U7_ORYSJ Os02g0758800 Os02g0758800 OsJ_08457 OSNPB_020758800 P0471A11.41 ENOG411E3ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Mate efflux family protein NA NA NA NA NA NA NA ENOG411E3ZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA kda class ii heat shock NA NA NA NA NA NA NA ENOG411E3ZC F4IA30 F4IA30_ARATH WD repeat protein 22403 WD repeat protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2013036; AT1G71780 NA Os01g0715800 protein (cDNA clone:001-114-E01, full insert sequence) Q8S1M5 Q8S1M5_ORYSJ Os01g0715800 Os01g0715800 B1131B07.24 OsJ_03250 OSNPB_010715800 P0683B11.5 ENOG411E3ZA ENODL15 Q9SK27,Q9SZ51 ENL1_ARATH,Q9SZ51_ARATH Early nodulin-like protein 1 (Phytocyanin-like protein),Early nodulin-like protein 15 (Similar to early nodulins) (Uncharacterized protein At4g31840) 19482,18962 Early nodulin-like protein 1 (Phytocyanin-like protein),Early nodulin-like protein 15 (Similar to early nodulins) (Uncharacterized protein At4g31840) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; electron carrier activity [GO:0009055],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; electron carrier activity [GO:0009055] locus:2040164;,locus:2116767; AT2G25060,AT4G31840 Early nodulin-like protein NA NA NA NA NA NA NA ENOG411EKNX RVE8 Q8RWU3,A0A1I9LS14,A0A1I9LS11,A0A1I9LS15 RVE8_ARATH,A0A1I9LS14_ARATH,A0A1I9LS11_ARATH,A0A1I9LS15_ARATH Protein REVEILLE 8 (MYB-like transcription factor) (Protein LHY-CCA1-like 5),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Delay and reduction in levels of evening-phased clock gene transcripts and long circadian period. {ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. FUNCTION: Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. MISCELLANEOUS: Subject to temperature associated alternative splicing producing mainly non-productive mRNAs. {ECO:0000305|PubMed:22902701}. 32801,24978,26754,30669 Protein REVEILLE 8 (MYB-like transcription factor) (Protein LHY-CCA1-like 5),Homeodomain-like superfamily protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription factor binding [GO:0001190]; circadian regulation of gene expression [GO:0032922]; histone H3 acetylation [GO:0043966]; photoperiodism, flowering [GO:0048573]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of gene expression [GO:0010628]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2075049; AT3G09600 Transcription factor NA NA NA NA NA NA NA ENOG411E4IR RHB1A,MYC6.6,AIRP1 Q2HIJ8,Q94AB7,Q93ZF6,F4JNK0,A0A1P8BH81 RHB1A_ARATH,Q94AB7_ARATH,Q93ZF6_ARATH,F4JNK0_ARATH,A0A1P8BH81_ARATH Probable E3 ubiquitin-protein ligase RHB1A (EC 2.3.2.27) (RING-H2 finger B1a) (RING-H2 zinc finger protein RHB1a) (RING-type E3 ubiquitin transferase RHB1A),At5g41350/MYC6_6 (RING/U-box superfamily protein),AT4g23450/F16G20_150 (RING finger family protein) (RING/U-box superfamily protein),RING/U-box superfamily protein Germination insensitive to ABA-W. Kim-2010 FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9ZT50}.,FUNCTION: Possesses E3 ubiquitin-protein ligase activity in vitro when associated with the E2 enzyme UBC8 in vitro (PubMed:20884812, PubMed:15644464). Plays combinatory roles with AIRP2 in the positive regulation of the abscisic acid-mediated drought stress response (PubMed:20884812). {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:20884812}. MISCELLANEOUS: Plants over-expressing AIRP1 exhibit tolerance to severe drought stresss. {ECO:0000269|PubMed:20884812}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 2.3.2.27 20954,23194,16940,23429,26133 Probable E3 ubiquitin-protein ligase RHB1A (EC 2.3.2.27) (RING-H2 finger B1a) (RING-H2 zinc finger protein RHB1a) (RING-type E3 ubiquitin transferase RHB1A),At5g41350/MYC6_6 (RING/U-box superfamily protein),AT4g23450/F16G20_150 (RING finger family protein) (RING/U-box superfamily protein),RING/U-box superfamily protein metal ion binding [GO:0046872]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567],mitochondrion [GO:0005739],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of hydrogen peroxide biosynthetic process [GO:0010729]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414] locus:505006415;,locus:2177881;,locus:2117909; AT4G00335,AT5G41350,AT4G23450 zinc finger Os10g0142100 protein (Zinc finger C3H4 type family protein) (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J023106J06, full insert sequence),Os11g0294600 protein (Zinc finger, C3HC4 type (RING finger), putative) (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:002-124-E05, full insert sequence) (cDNA clone:J033033J06, full insert sequence),Os10g0142100 protein (Fragment) Q33B47,Q53MH1,A0A0P0XS06 Q33B47_ORYSJ,Q53MH1_ORYSJ,A0A0P0XS06_ORYSJ LOC_Os10g05230 Os10g0142100 OSNPB_100142100,Os11g0294600 LOC_Os11g18947 Os11g0294600 OsJ_33678 OSNPB_110294600,Os10g0142100 OSNPB_100142100 ENOG411E4IS Q67Y32 Q67Y32_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (At1g48960) (Uncharacterized protein At1g48961) 24660 Adenine nucleotide alpha hydrolases-like superfamily protein (At1g48960) (Uncharacterized protein At1g48961) hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2028516; AT1G48960 Universal stress protein NA NA NA NA NA NA NA ENOG411EKNE GSTF14 Q9C6C8 GSTFE_ARATH Glutathione S-transferase F14 (AtGSTF14) (EC 2.5.1.18) (GST class-phi member 14) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G49860-MONOMER; 2.5.1.18 28819 Glutathione S-transferase F14 (AtGSTF14) (EC 2.5.1.18) (GST class-phi member 14) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2007278; AT1G49860 Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EJZD HULK1,HUA2 Q9LEY4,Q9XER9,A0A1P8BC24 HUAL1_ARATH,HUA2_ARATH,A0A1P8BC24_ARATH Protein HUA2-LIKE 1 (HUA2-like protein 1),ENHANCER OF AG-4 protein 2 (Protein AERIAL ROSETTE 1),Tudor/PWWP/MBT domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the triple mutant plants hulk1, hulk2 and hulk3 show delayed flowering. {ECO:0000269|PubMed:25070081}.,DISRUPTION PHENOTYPE: Hua2 mutations enhance the phenotype of mild ag-4 and elf4 alleles and also induce early flowering by reducing the expression of several MADS genes that act as floral repressors like FLC, FLM/MAF1, MAF2 and SVP. {ECO:0000269|PubMed:15659097}. In the double mutant plants fertile stamens were replaced by sterile petaloid stamens.,Late-flowering A. thaliana accession characterized by an enlarged basal rosette formation of aerial rosettes in the axils of stem leaves and reversion of early floral meristems to indeterminate growth a phenomenon known as floral reversion.,Early flowering.,Early flowering in long and short days. FUNCTION: Probable transcription factor that acts with partial redundancy with HULK2 and HULK3. Plays diverse and essential roles in the control of plant development, physiology and flowering time. {ECO:0000269|PubMed:25070081}.,FUNCTION: Transcription factor that functions as repressor of flowering by enhancing the expression of several genes that delay flowering including FLC, FLM/MAF1, MAF2 and SVP (PubMed:15659097). Also acts in the floral homeotic AGAMOUS (AG) pathway, specifically by processing the AGAMOUS pre-mRNA (PubMed:10198637, PubMed:12530963). Functions in association with HUA1 and HEN4 in AG pre-mRNA processing (PubMed:12530963). Involved in all three aspects of the AG functions, the specification of stamen and carpel identities, the control of floral determinacy, and the spatial restriction of AP1 expression (PubMed:10198637, PubMed:12530963, PubMed:15659097). Acts as transcription regulator that controls anthocyanin accumulation (PubMed:25425527). {ECO:0000269|PubMed:10198637, ECO:0000269|PubMed:12530963, ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:25425527}. MISCELLANEOUS: In cv. Sy-0, a naturally occurring allele K525E, termed ART1, together with active FRI and FLC alleles causes delayed flowering of primary and axillary meristems, resulting in the distinctive Sy-0 morphology (PubMed:17764945). {ECO:0000305|PubMed:17764945}. 156555,151078,145362 Protein HUA2-LIKE 1 (HUA2-like protein 1),ENHANCER OF AG-4 protein 2 (Protein AERIAL ROSETTE 1),Tudor/PWWP/MBT domain-containing protein nucleus [GO:0005634]; plasmodesma [GO:0009506]; flower development [GO:0009908]; mRNA processing [GO:0006397]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anthocyanin accumulation in tissues in response to UV light [GO:0043481]; cell differentiation [GO:0030154]; maintenance of floral organ identity [GO:0048497]; mRNA processing [GO:0006397]; negative regulation of flower development [GO:0009910]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed throughout young primordia, and vegetative and reproductive apices. {ECO:0000269|PubMed:25070081}.,TISSUE SPECIFICITY: Expressed in the inflorescence meristem, floral primordia, inflorescence stem, and floral pedicels. Also detected in the shoot apical meristem, stems, leaves, embryos, and roots. {ECO:0000269|PubMed:10198637}. locus:2181569;,locus:2178292; AT5G08230,AT5G23150 RPR NA NA NA NA NA NA NA ENOG411EAG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411EAG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EAG4 Q9ZUN9 Q9ZUN9_ARATH Transmembrane protein (Uncharacterized protein At2g19530) 23274 Transmembrane protein (Uncharacterized protein At2g19530) integral component of membrane [GO:0016021] locus:2050377; AT2G19530 NA NA NA NA NA NA NA NA ENOG411EAGK CHI O24603 CHI_ARATH Endochitinase CHI (EC 3.2.1.14) ARA:AT2G43570-MONOMER; 3.2.1.14 29775 Endochitinase CHI (EC 3.2.1.14) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; leaf senescence [GO:0010150]; polysaccharide catabolic process [GO:0000272]; response to amitrole [GO:0072722]; response to silver ion [GO:0010272]; response to virus [GO:0009615]; systemic acquired resistance [GO:0009627] locus:2044024; AT2G43570 Chitin recognition protein NA NA NA NA NA NA NA ENOG411EAGG VQ19 Q9LDZ1 VQ19_ARATH VQ motif-containing protein 19 (AtVQ19) (MPK3/6-targeted VQ-motif-containing protein 4) FUNCTION: May modulate WRKY transcription factor activities. {ECO:0000250|UniProtKB:Q9M9F0}. 23662 VQ motif-containing protein 19 (AtVQ19) (MPK3/6-targeted VQ-motif-containing protein 4) nucleus [GO:0005634] locus:2087075; AT3G15300 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411EAGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1350) NA NA NA NA NA NA NA ENOG411EAGD GLK2 Q9FFH0,A0A1P8BF90 GLK2_ARATH,A0A1P8BF90_ARATH Transcription activator GLK2 (GBF'S PRO-RICH REGION-INTERACTING factor 2) (Golden2-like protein 2) (AtGLK2),GOLDEN2-like 2 DISRUPTION PHENOTYPE: Pale green siliques (PubMed:12220263). Pale-green seedlings in double mutants glk1/glk2 (PubMed:23459204). {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:23459204}. Plants are pale green throughout development and reduced in size. Chloroplast development impaired and photosystem II proteins accumulate to reduced levels. Pale green siliques-J. Langdale-2008 FUNCTION: Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. MISCELLANEOUS: Plants overexpressing GLK2 have a delay in flowering under long days. 42167,38742 Transcription activator GLK2 (GBF'S PRO-RICH REGION-INTERACTING factor 2) (Golden2-like protein 2) (AtGLK2),GOLDEN2-like 2 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chloroplast organization [GO:0009658]; negative regulation of flower development [GO:0009910]; negative regulation of leaf senescence [GO:1900056]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of chlorophyll biosynthetic process [GO:0010380]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in cotyledons and rosette and cauline leaves. Expressed at low levels in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:12220263}. locus:2167639; AT5G44190 GOLDEN2-like 2 NA NA NA NA NA NA NA ENOG411EAGV SUR1 Q9SIV0,Q67Y55 SUR1_ARATH,TAT1_ARATH S-alkyl-thiohydroximate lyase SUR1 (EC 4.4.1.-) (Protein ABERRANT LATERAL ROOT FORMATION 1) (Protein HOOKLESS 3) (Protein ROOTY) (Protein ROOTY 1) (Protein SUPERROOT 1),Probable aminotransferase TAT1 (EC 2.6.1.-) (Tyrosine aminotransferase 1) DISRUPTION PHENOTYPE: Hyperproliferation of lateral roots. Small and epinastic cotyledons and true leaves. Rare floral organs and sterile flowers. High levels of endogenous free and conjugated auxin. {ECO:0000269|PubMed:12242367, ECO:0000269|PubMed:7657165, ECO:0000269|PubMed:8589625, ECO:0000269|PubMed:8612271}. Abnormal lateral root formation-N. Olszewski-2000 FUNCTION: C-S lyase involved in glucosinolate biosynthesis. Converts S-(alkylacetohydroximoyl)-L-cysteine to thiohydroximate. Functions in auxin homeostasis. Probably required for glucosinolate activation in response to pathogens. {ECO:0000269|PubMed:14871316}. ARA:AT2G20610-MONOMER;MetaCyc:AT2G20610-MONOMER;,ARA:AT4G28420-MONOMER; R-ATH-71182; 4.4.1.-,2.6.1.- 51088,49782 S-alkyl-thiohydroximate lyase SUR1 (EC 4.4.1.-) (Protein ABERRANT LATERAL ROOT FORMATION 1) (Protein HOOKLESS 3) (Protein ROOTY) (Protein ROOTY 1) (Protein SUPERROOT 1),Probable aminotransferase TAT1 (EC 2.6.1.-) (Tyrosine aminotransferase 1) membrane [GO:0016020]; carbon-sulfur lyase activity [GO:0016846]; pyridoxal phosphate binding [GO:0030170]; S-alkylthiohydroximate lyase activity [GO:0080108]; transaminase activity [GO:0008483]; adventitious root development [GO:0048830]; cellular amino acid metabolic process [GO:0006520]; glucosinolate biosynthetic process [GO:0019761]; indoleacetic acid biosynthetic process [GO:0009684]; regulation of cell growth by extracellular stimulus [GO:0001560],pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520] locus:2046056;,locus:2121407; AT2G20610,AT4G28420 Beta-eliminating lyase NA NA NA NA NA NA NA ENOG411EAGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ROK family NA NA NA NA NA NA NA ENOG411E6WB Q9C8W5,O80553 Q9C8W5_ARATH,O80553_ARATH At1g71970/F17M19_12 (Uncharacterized protein F17M19.12),T22J18.15 24615,20592 At1g71970/F17M19_12 (Uncharacterized protein F17M19.12),T22J18.15 locus:2016039;,locus:2199655; AT1G71970,AT1G22680 NA NA NA NA NA NA NA NA ENOG411DQN3 LTA2,EMB3003 Q9SQI8,Q9C8P0 ODP24_ARATH,ODP25_ARATH Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 4 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 4) (PDC-E2 4) (PDCE2 4) (plE2),Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 5 of pyruvate dehydrogenase complex) (Protein EMBRYO DEFECTIVE 3003) (Pyruvate dehydrogenase complex component E2 5) (PDC-E2 5) (PDCE2 5) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:13677473}. Embryo defective; Transition-D. Oliver-2003,Embryo defective; Preglobular / Globular-D. Meinke-2004 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. ARA:AT3G25860-MONOMER;,ARA:AT1G34430-MONOMER; 2.3.1.12 50080,48307 Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 4 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 4) (PDC-E2 4) (PDCE2 4) (plE2),Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 5 of pyruvate dehydrogenase complex) (Protein EMBRYO DEFECTIVE 3003) (Pyruvate dehydrogenase complex component E2 5) (PDC-E2 5) (PDCE2 5) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; dihydrolipoyllysine-residue acetyltransferase activity [GO:0004742]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; glycolytic process [GO:0006096],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; dihydrolipoyllysine-residue acetyltransferase activity [GO:0004742]; protein domain specific binding [GO:0019904]; glycolytic process [GO:0006096] locus:2092070;,locus:2009273; AT3G25860,AT1G34430 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.-),Os12g0182200 protein (Fragment) Q6ZKB1,Q69N33,Q2QWU7,A0A0P0Y7M5 Q6ZKB1_ORYSJ,Q69N33_ORYSJ,Q2QWU7_ORYSJ,A0A0P0Y7M5_ORYSJ Os08g0431300 OJ1111_B08.11 OJ1124_B05.20 OSNPB_080431300,Os09g0408600 Os09g0408600 OSNPB_090408600 P0465E03.17,Os12g0182200 LOC_Os12g08170 Os12g0182200 OSNPB_120182200,Os12g0182200 OSNPB_120182200 ENOG411DQN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACT domain ACT domain containing protein, expressed (ACT-domain repeat protein 9) (Os03g0247900 protein) (cDNA, clone: J100067F18, full insert sequence) Q10P43 Q10P43_ORYSJ OsACR9 Os03g0247900 LOC_Os03g14370 OSNPB_030247900 ENOG411DQN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0027H06.14 protein (Os04g0110200 protein) Q7XXF3 Q7XXF3_ORYSJ Os04g0110200 OSJNBa0027H06.14 OSNPB_040110200 ENOG411DQN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily Os01g0658600 protein A0A0P0V642 A0A0P0V642_ORYSJ Os01g0658600 OSNPB_010658600 ENOG411DQN6 Q93VE6,A8MQD8 Q93VE6_ARATH,A8MQD8_ARATH AT5g10780/T30N20_50 (ER membrane protein complex subunit-like protein),ER membrane protein complex subunit-like protein 19908,20722 AT5g10780/T30N20_50 (ER membrane protein complex subunit-like protein),ER membrane protein complex subunit-like protein integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; ER membrane protein complex [GO:0072546]; protein folding in endoplasmic reticulum [GO:0034975] locus:2183745; AT5G10780 Transmembrane protein 85 Expressed protein (Os03g0360500 protein) (cDNA clone:001-023-E02, full insert sequence) (cDNA clone:J033033E17, full insert sequence) Q10L35 Q10L35_ORYSJ Os03g0360500 LOC_Os03g24580 Os03g0360500 OsJ_10921 OSNPB_030360500 ENOG411DQN4 SPS3 Q8RY24 SPSA3_ARATH Probable sucrose-phosphate synthase 3 (EC 2.4.1.14) (Sucrose phosphate synthase 3F) (AtSPS3F) (UDP-glucose-fructose-phosphate glucosyltransferase) FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation. PATHWAY: Glycan biosynthesis; sucrose biosynthesis; sucrose from D-fructose 6-phosphate and UDP-alpha-D-glucose: step 1/2. 2.4.1.14 119476 Probable sucrose-phosphate synthase 3 (EC 2.4.1.14) (Sucrose phosphate synthase 3F) (AtSPS3F) (UDP-glucose-fructose-phosphate glucosyltransferase) Golgi apparatus [GO:0005794]; sucrose synthase activity [GO:0016157]; sucrose-phosphate synthase activity [GO:0046524]; sucrose biosynthetic process [GO:0005986] locus:2010647; AT1G04920 Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation Probable sucrose-phosphate synthase 1 (EC 2.4.1.14) (Sucrose phosphate synthase 1F) (OsSPS1F) (UDP-glucose-fructose-phosphate glucosyltransferase),Os01g0919400 protein (Fragment) Q0JGK4,A0A0P0VCD2 SPSA1_ORYSJ,A0A0P0VCD2_ORYSJ SPS1 Os01g0919400 LOC_Os01g69030 P0678F11.16,Os01g0919400 OSNPB_010919400 FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation (By similarity). {ECO:0000250}. ENOG411DQN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) 'putative triglyceride lipase, PF01764 (Os05g0372400 protein) (cDNA clone:J013159D11, full insert sequence),Os07g0668700 protein (Putative triacylglycerol lipase) (cDNA clone:002-146-D06, full insert sequence),Os07g0668700 protein Q6I5Q3,Q8H3R3,A0A0P0X9X0 Q6I5Q3_ORYSJ,Q8H3R3_ORYSJ,A0A0P0X9X0_ORYSJ Os05g0372400 OsJ_18308 OSJNBa0025P09.8 OSNPB_050372400,P0625E02.112 Os07g0668700 OsJ_25507 OSNPB_070668700,Os07g0668700 OSNPB_070668700 ENOG411DQN8 BGAL6,BGAL16 Q9FFN4,Q8GX69,A0A1P8ANA8,A0A1P8ANB0 BGAL6_ARATH,BGA16_ARATH,A0A1P8ANA8_ARATH,A0A1P8ANB0_ARATH Beta-galactosidase 6 (Lactase 6) (EC 3.2.1.23),Beta-galactosidase 16 (Lactase 16) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23),Beta-galactosidase 16 ARA:AT5G63800-MONOMER;,ARA:AT1G77410-MONOMER; 3.2.1.23 79759,91648,79767,92192 Beta-galactosidase 6 (Lactase 6) (EC 3.2.1.23),Beta-galactosidase 16 (Lactase 16) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23),Beta-galactosidase 16 apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; plant-type cell wall modification [GO:0009827],apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],carbohydrate binding [GO:0030246]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed at low levels in siliques. {ECO:0000269|PubMed:16267099}.,TISSUE SPECIFICITY: Ubiquitous, with higher expression levels in siliques. {ECO:0000269|PubMed:16267099}. locus:2160649;,locus:2031417; AT5G63800,AT1G77410 beta-galactosidase Beta-galactosidase 7 (Lactase 7) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) Q75HQ3,A0A0P0WMS2 BGAL7_ORYSJ,A0A0P0WMS2_ORYSJ Os05g0428100 LOC_Os05g35360 OsJ_017861 OSJNBa0044P19.21 P0636F09.15,Os05g0428100 OSNPB_050428100 ENOG411DQNS Q8L471 Q8L471_ARATH NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) (Uncharacterized protein At3g22550) 29640 NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) (Uncharacterized protein At3g22550) locus:2077031; AT3G22550 DUF581 domain containing protein expressed Expressed protein (Os03g0665200 protein) (Putative senescence-associated protein) (cDNA clone:J013056K06, full insert sequence) Q75GB5 Q75GB5_ORYSJ OSJNBb0031A14.9 LOC_Os03g46260 Os03g0665200 OsJ_12006 OSNPB_030665200 ENOG411DQNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat family protein, expressed (Os11g0640700 protein) (Os11g0640800 protein) Q2R0M2 Q2R0M2_ORYSJ Os11g0640800 LOC_Os11g42100 Os11g0640700 OsJ_34568 OSNPB_110640800 ENOG411DQNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 734A4 (EC 1.14.-.-) Q69XM6 C7344_ORYSJ CYP734A4 Os06g0600400 LOC_Os06g39880 OsJ_21885 P0457B11.8 FUNCTION: Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis. Is a multifunctional and multisubstrate enzyme that controls the endogenous bioactive BR content both by direct inactivation of castasterone and by decreasing the levels of BR precursors. Catalyzes the oxidation of carbon 22 hydroxylated BR intermediates to produce C26 oxidized metabolites. {ECO:0000269|PubMed:21418356}. MISCELLANEOUS: Plants overexpressing CYP734A4 show a dwarf phenotype, characterized by abnormal leaves with stiff, tortuous blades, undeveloped leaf sheaths, no flowering and bear seeds. Over-expression of CYP734A4 causes an important reduction of the levels of the BRs castasterone, 6-deoxocastasterone and 6-deoxotyphasterol. ENOG411DQNW KEA2,KEA1 O65272,Q9ZTZ7,F4JHE9 KEA2_ARATH,KEA1_ARATH,F4JHE9_ARATH K(+) efflux antiporter 2, chloroplastic (AtKEA2),K(+) efflux antiporter 1, chloroplastic (AtKEA1),K+ efflux antiporter 2 DISRUPTION PHENOTYPE: No visible phenotype. Kea1 and kea2 double mutants display strong growth retardation along with pale green leaves. Kea1, kea2 and kea3 triple mutants are extremely stunted in size with entirely pale leaves and died before steeing seeds. {ECO:0000269|PubMed:24794527}. FUNCTION: Electroneutral K(+)/H(+) antiporter modulating monovalent cation and pH homeostasis in plastids (PubMed:22551943, PubMed:24278440). Transports K(+) and Cs(+) preferentially relative to Na(+) or Li(+) (PubMed:22551943). May function in osmotic adjustment (PubMed:24278440). {ECO:0000269|PubMed:22551943, ECO:0000269|PubMed:24278440}.,FUNCTION: K(+)/H(+) antiporter involved in K(+) homeostasis and osmotic adjustment. {ECO:0000269|PubMed:24278440}. MISCELLANEOUS: The full-length protein being inactive in a heterologous system, the N-terminal region (58-556) seems to have a regulatory or auto-inhibitory function. {ECO:0000269|PubMed:22551943}.,MISCELLANEOUS: The full-length protein being inactive in a heterologous system, the N-terminal region seems to have a regulatory or auto-inhibitory function. {ECO:0000269|PubMed:24278440}. 126157,128033,127605 K(+) efflux antiporter 2, chloroplastic (AtKEA2),K(+) efflux antiporter 1, chloroplastic (AtKEA1),K+ efflux antiporter 2 chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; potassium:proton antiporter activity [GO:0015386],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; potassium:proton antiporter activity [GO:0015386],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; potassium:proton antiporter activity [GO:0015386]; potassium ion transport [GO:0006813]; proton transport [GO:0015992] TISSUE SPECIFICITY: Detected in leaves, stems and flowers (PubMed:22551943). Expressed in shoots and roots (PubMed:24278440). {ECO:0000269|PubMed:22551943, ECO:0000269|PubMed:24278440}.,TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:24278440}. locus:2198215;,locus:2127123; AT4G00630,AT1G01790 efflux antiporter Os04g0682800 protein (Fragment),Os04g0682900 protein (Fragment) A0A0P0WGH1,A0A0N7KJY3,A0A0P0WGH3,A0A0P0WGL6 A0A0P0WGH1_ORYSJ,A0A0N7KJY3_ORYSJ,A0A0P0WGH3_ORYSJ,A0A0P0WGL6_ORYSJ Os04g0682800 OSNPB_040682800,Os04g0682900 OSNPB_040682900 ENOG411DQNU TMK1 P43298,Q9SLF5,F4JNP7 TMK1_ARATH,Q9SLF5_ARATH,F4JNP7_ARATH Receptor protein kinase TMK1 (EC 2.7.11.1) (BARK1-like kinase 1) (Transmembrane kinase 1),Protein kinase superfamily protein (Uncharacterized protein At2g16620),Protein kinase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype (PubMed:23613767). Tmk1 and tmk2 double mutants, tmk1 and tmk3 double mutants and tmk1, tmk2 and tmk3 triple mutants have no visible phenotypes (PubMed:23613767). Tmk1 and tmk4 double mutants, tmk1, tmk2 and tmk4 triple mutants and tmk1, tmk3 and tmk4 triple mutants have a severe reduction in organ size, a substantial delay in growth and development, and a decrease in fertility (PubMed:23613767). Tmk1, tmk2, tmk3 and tmk4 quadruple mutants are embryo lethal (PubMed:23613767, PubMed:24578577). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:24578577}. FUNCTION: Transmembrane kinase receptor (PubMed:1332795). Phosphorylates only serine and threonine residues (PubMed:8224199). Involved in auxin signal transduction and cell expansion and proliferation regulation (PubMed:23613767). Forms with ABP1 a cell surface auxin perception complex that activates ROP signaling pathways (PubMed:24578577). Required for auxin promotion of pavement cell interdigitation (PubMed:24578577). Auxin promotes the formation of the ABP1-TMK1 protein complex (PubMed:24578577). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:24578577, ECO:0000269|PubMed:8224199, ECO:0000303|PubMed:1332795}. 2.7.11.1 102388,15051,18247 Receptor protein kinase TMK1 (EC 2.7.11.1) (BARK1-like kinase 1) (Transmembrane kinase 1),Protein kinase superfamily protein (Uncharacterized protein At2g16620),Protein kinase superfamily protein extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; signal transduction [GO:0007165],kinase activity [GO:0016301],protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers. {ECO:0000269|PubMed:1332795, ECO:0000269|PubMed:23613767}. locus:2013825;,locus:2059894;,locus:4515103467; AT1G66150,AT2G16620,AT4G29654 receptor protein kinase Os03g0717000 protein (Fragment),OSJNBa0070M12.3 protein (OSJNBa0088H09.21 protein) (Os04g0685900 protein) (cDNA clone:J033108C14, full insert sequence),Os04g0685900 protein (Fragment) Q0DP45,Q7X616,A0A0P0W293,A0A0P0WGQ9 Q0DP45_ORYSJ,Q7X616_ORYSJ,A0A0P0W293_ORYSJ,A0A0P0WGQ9_ORYSJ Os03g0717000 OSNPB_030717000,Os04g0685900 OsJ_16698 OSJNBa0070M12.3 OSJNBa0088H09.21 OSNPB_040685900,Os04g0685900 OSNPB_040685900 ENOG411DQNT A0A1P8B1A7,A0A1P8B166,A0A1P8B160,F4IVR1,A0A1P8B168,A0A1P8B154,A0A1P8B153 A0A1P8B1A7_ARATH,A0A1P8B166_ARATH,A0A1P8B160_ARATH,F4IVR1_ARATH,A0A1P8B168_ARATH,A0A1P8B154_ARATH,A0A1P8B153_ARATH Serinc-domain containing serine and sphingolipid biosynthesis protein R-ATH-977347; 48725,37890,37955,48448,42707,46189,36147 Serinc-domain containing serine and sphingolipid biosynthesis protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; L-serine transmembrane transporter activity [GO:0015194] locus:504956041; AT2G33205 TMS membrane protein tumour differentially expressed protein Os04g0506300 protein (cDNA clone:001-118-A12, full insert sequence) Q0JBW5 Q0JBW5_ORYSJ Os04g0506300 Os04g0506300 OSNPB_040506300 ENOG411DQNZ Q9FH87,P0C8A0 PP447_ARATH,PP275_ARATH Putative pentatricopeptide repeat-containing protein At5g65820,Pentatricopeptide repeat-containing protein At3g49730 74120,73230 Putative pentatricopeptide repeat-containing protein At5g65820,Pentatricopeptide repeat-containing protein At3g49730 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2156213;,locus:2097395; AT5G65820,AT3G49730 Pentatricopeptide repeat-containing protein Os03g0728200 protein A0A0P0W365 A0A0P0W365_ORYSJ Os03g0728200 OSNPB_030728200 ENOG411DQNY CRCK3 Q9ASQ5 CRCK3_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 3 (EC 2.7.11.1) 2.7.11.1 57459 Calmodulin-binding receptor-like cytoplasmic kinase 3 (EC 2.7.11.1) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2041735; AT2G11520 STYKc Nodulation receptor kinase-like protein (Os09g0123300 protein) Q6K270 Q6K270_ORYSJ Os09g0123300 OSNPB_090123300 P0415D04.48 ENOG411DQNX OBGL Q8L7L0 OBGC_ARATH GTP-binding protein OBGC, chloroplastic (AtOBGC) (GTP-binding protein OBG-like) (AtOBGL) (Protein CHLOROPLASTIC SAR1) (CPSAR1) (Protein EMBRYO DEFECTIVE 269) (Protein EMBRYO DEFECTIVE 3138) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. Embryo maturation arrested at the late globular stage. {ECO:0000269|PubMed:19636801, ECO:0000269|PubMed:19995735, ECO:0000269|PubMed:20408996, ECO:0000269|PubMed:22380942}. Embryo defective; Preglobular / Globular-D. Meinke-2011 FUNCTION: GTP-binding protein involved in membrane biogenesis and protein synthesis in chloroplast. Functions in the biogenesis of thylakoid membrane and plastid ribosome during chloroplast development. May be involved in the vesicular traffic between the chloroplast inner envelope membrane and thylakoids. Possesses GTPase activity in vitro. {ECO:0000269|PubMed:19636801, ECO:0000269|PubMed:19995735, ECO:0000269|PubMed:20408996, ECO:0000269|PubMed:22380942}. 75648 GTP-binding protein OBGC, chloroplastic (AtOBGC) (GTP-binding protein OBG-like) (AtOBGL) (Protein CHLOROPLASTIC SAR1) (CPSAR1) (Protein EMBRYO DEFECTIVE 269) (Protein EMBRYO DEFECTIVE 3138) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; magnesium ion binding [GO:0000287]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; response to light stimulus [GO:0009416]; rRNA processing [GO:0006364]; thylakoid membrane organization [GO:0010027] TISSUE SPECIFICITY: Specifically expressed in leaves. {ECO:0000269|PubMed:19636801}. locus:2182998; AT5G18570 Domain of unknown function (DUF1967) Probable GTP-binding protein OBGC1, chloroplastic,Os07g0669250 protein,Os07g0669200 protein Q0D3S3,A0A0P0XA81,A0A0P0X9Z6 OBGC1_ORYSJ,A0A0P0XA81_ORYSJ,A0A0P0X9Z6_ORYSJ OBGC1 Os07g0669200 LOC_Os07g47300 P0625E02.120,Os07g0669250 OSNPB_070669250,Os07g0669200 OSNPB_070669200 DISRUPTION PHENOTYPE: Severe chlorotic phenotype during early leaf development. {ECO:0000269|PubMed:22380942}. FUNCTION: Probable GTP-binding protein that plays a crucial role in chloroplast development and is required for leaf greening during plant growth. {ECO:0000269|PubMed:22380942}. ENOG411DQNA AL6,AL7 Q8S8M9,Q8LA16 ALFL6_ARATH,ALFL7_ARATH PHD finger protein ALFIN-LIKE 6 (Protein AL6),PHD finger protein ALFIN-LIKE 7 (Protein AL7) FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. 28847,28286 PHD finger protein ALFIN-LIKE 6 (Protein AL6),PHD finger protein ALFIN-LIKE 7 (Protein AL7) cytosol [GO:0005829]; nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; cellular response to phosphate starvation [GO:0016036]; covalent chromatin modification [GO:0016569]; metal ion homeostasis [GO:0055065]; regulation of transcription, DNA-templated [GO:0006355]; root hair elongation [GO:0048767]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19154204}. locus:2056281;,locus:2012577; AT2G02470,AT1G14510 PHD finger protein PHD finger protein ALFIN-LIKE 8 Q2R837 ALFL8_ORYSJ Os11g0244800 LOC_Os11g14010 OsJ_33509 OSJNBa0004P24 OSJNBa0024M06 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. ENOG411DQNG FRO4,FRO5,FRO2 Q8W110,Q9FLW2,P92949,A0A1P8AVL6,A0A1P8B9Z4,A0A1P8B9Z7 FRO4_ARATH,FRO5_ARATH,FRO2_ARATH,A0A1P8AVL6_ARATH,A0A1P8B9Z4_ARATH,A0A1P8B9Z7_ARATH Ferric reduction oxidase 4 (AtFRO4) (EC 1.16.1.7) (Ferric-chelate reductase 4),Ferric reduction oxidase 5 (AtFRO5) (EC 1.16.1.7) (Ferric-chelate reductase 5),Ferric reduction oxidase 2 (AtFRO2) (EC 1.16.1.7) (Ferric-chelate reductase 2) (Protein FERRIC CHELATE REDUCTASE DEFECTIVE 1),Ferric reduction oxidase 2,Ferric reduction oxidase 5 DISRUPTION PHENOTYPE: Impaired growth on media with no added iron. No response to glycine betaine in chilling assays. {ECO:0000269|PubMed:10067892}. FUNCTION: Ferric chelate reductase. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates (PubMed:16006655). May function as root surface cupric chelate reductase and participate in the reduction of Cu(2+), for Cu(+) acquisition via Cu(+) transporters in response to copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:22374396}.,FUNCTION: Ferric chelate reductase probably involved in iron reduction in shoots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. May act in iron metabolism in reproductive organs (PubMed:16006655). May function as root surface cupric chelate reductase and participate in the reduction of Cu(2+), for Cu(+) acquisition via Cu(+) transporters in response to copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:22374396}.,FUNCTION: Flavocytochrome that transfers electrons across the plasma membrane to reduce ferric iron chelates to form soluble ferrous iron in the rhizosphere. May be involved in the delivery of iron to developing pollen grains. Acts also as a copper-chelate reductase. Involved in glycine betaine-mediated chilling tolerance and reactive oxygen species accumulation. {ECO:0000269|PubMed:10067892, ECO:0000269|PubMed:14526117, ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:18513375}. MISCELLANEOUS: Post-transcriptionally regulated by iron. Coordinately regulated with the iron transport protein IRT1. ARA:AT5G23980-MONOMER;,ARA:AT5G23990-MONOMER;,ARA:AT1G01580-MONOMER; 1.16.1.7 80251,81166,81501,90447,64830,80193 Ferric reduction oxidase 4 (AtFRO4) (EC 1.16.1.7) (Ferric-chelate reductase 4),Ferric reduction oxidase 5 (AtFRO5) (EC 1.16.1.7) (Ferric-chelate reductase 5),Ferric reduction oxidase 2 (AtFRO2) (EC 1.16.1.7) (Ferric-chelate reductase 2) (Protein FERRIC CHELATE REDUCTASE DEFECTIVE 1),Ferric reduction oxidase 2,Ferric reduction oxidase 5 integral component of membrane [GO:0016021]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ferric-chelate reductase activity [GO:0000293]; metal ion binding [GO:0046872]; ion transport [GO:0006811]; iron chelate transport [GO:0015688]; iron ion homeostasis [GO:0055072]; response to bacterium [GO:0009617],integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in siliques. Detected at low levels in roots, cotyledon veins and shoots. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:16362328}.,TISSUE SPECIFICITY: Expressed at low levels in roots, shoots, pedicels and inflorescence stems, flowers, sepals, stigmas and anther filaments. {ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:16362328}.,TISSUE SPECIFICITY: Expressed in the epidermal cells of the roots. High expression in lateral roots and root hairs. Detected in leaves, stems, siliques and in flowers in anthers and styles. {ECO:0000269|PubMed:10067892, ECO:0000269|PubMed:14526117, ECO:0000269|PubMed:16006655, ECO:0000269|PubMed:16362328, ECO:0000269|PubMed:16813577}. locus:2178677;,locus:2178687;,locus:2025351; AT5G23980,AT5G23990,AT1G01580 Ferric-chelate reductase Os04g0578600 protein (Fragment) A0A0P0WE87 A0A0P0WE87_ORYSJ Os04g0578600 OSNPB_040578600 ENOG411DQNF WAK2,WAK3,WAK1,WAK5,WAK4,WAKL16,F16F4.7 Q9LMP1,Q9LMN8,Q39191,Q9LMN7,Q9LMN6,Q9LSV3,Q9LMN9,A0A1P8AQU3,F4I2Z2 WAK2_ARATH,WAK3_ARATH,WAK1_ARATH,WAK5_ARATH,WAK4_ARATH,WAKLS_ARATH,Q9LMN9_ARATH,A0A1P8AQU3_ARATH,F4I2Z2_ARATH Wall-associated receptor kinase 2 (EC 2.7.11.-),Wall-associated receptor kinase 3 (EC 2.7.11.-),Wall-associated receptor kinase 1 (EC 2.7.11.-),Wall-associated receptor kinase 5 (EC 2.7.11.-),Wall-associated receptor kinase 4 (EC 2.7.11.-),Putative wall-associated receptor kinase-like 16 (EC 2.7.11.-),F16F4.7 protein (Protein kinase superfamily protein),Wall associated kinase 3,Protein kinase superfamily protein On pond water without sucrose most wak2-1 seedlings arrested or slowed growth. The wak2-1 seedlings were significantly (P < 0.001) shorter than wild-type with the roots being affected more than the hypocotyls. Arrest of wak2-1 on pond water was rescued by the addition of 60 mM sucrose fructose or glucose but not sorbitol or mannitol. When grown in the dark for 3 weeks on soil wak2-1 plants have less hypocotyl extension than wild type. wak2-1 affects the rate of cell elongation in roots. than the wild-type Incomplete penetrance of seedling lethality; Slow growth; Small seedlings; Short roots-N. Byers-2006 FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. {ECO:0000269|PubMed:11226187}.,FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.,FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner. {ECO:0000269|PubMed:11226187, ECO:0000269|PubMed:12767910, ECO:0000269|PubMed:12913180}.,FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. {ECO:0000269|PubMed:11402163}.,FUNCTION: Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. MISCELLANEOUS: Binding to polygalacturonic acid (PGA) multimers is calcium-dependent. 2.7.11.- 81644,82701,81211,82206,81704,49073,18756,53384,24240 Wall-associated receptor kinase 2 (EC 2.7.11.-),Wall-associated receptor kinase 3 (EC 2.7.11.-),Wall-associated receptor kinase 1 (EC 2.7.11.-),Wall-associated receptor kinase 5 (EC 2.7.11.-),Wall-associated receptor kinase 4 (EC 2.7.11.-),Putative wall-associated receptor kinase-like 16 (EC 2.7.11.-),F16F4.7 protein (Protein kinase superfamily protein),Wall associated kinase 3,Protein kinase superfamily protein cell [GO:0005623]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166]; cellular water homeostasis [GO:0009992]; oligosaccharide metabolic process [GO:0009311]; response to salicylic acid [GO:0009751]; unidimensional cell growth [GO:0009826],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; kinase activity [GO:0016301]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; defense response to fungus [GO:0050832]; response to salicylic acid [GO:0009751]; response to virus [GO:0009615],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166]; lateral root development [GO:0048527]; unidimensional cell growth [GO:0009826],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein kinase activity [GO:0004672],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] DEVELOPMENTAL STAGE: Expressed in shoot and root apical meristems, and in expanding leaves and sepals. {ECO:0000269|PubMed:11226187}. TISSUE SPECIFICITY: Predominantly expressed in green tissues such as stems and leaves. Detected at organ junctions. {ECO:0000269|PubMed:10380805}.,TISSUE SPECIFICITY: Predominantly expressed in green tissues such as stems and leaves. {ECO:0000269|PubMed:10380805}.,TISSUE SPECIFICITY: Predominantly expressed in green tissues such as stems and leaves. Detected at organ junctions. {ECO:0000269|PubMed:10380805, ECO:0000269|PubMed:11335717, ECO:0000269|PubMed:1438303, ECO:0000269|PubMed:9681026}.,TISSUE SPECIFICITY: Strictly expressed in siliques. {ECO:0000269|PubMed:10380805}. locus:2014912;,locus:2014897;,locus:2014902;,locus:2014962;,locus:2014952;,locus:2094468;,locus:504956303;,locus:2199628; AT1G21270,AT1G21240,AT1G21250,AT1G21230,AT1G21210,AT3G25490,AT1G21245,AT1G22720 Wall-associated receptor kinase OSJNBa0083N12.1 protein (Os04g0599000 protein) (cDNA clone:J013001F05, full insert sequence),Os02g0111600 protein,Os04g0598900 protein,Os02g0811200 protein (Putative wall-associated kinase),Os06g0705200 protein (Putative wall-associated kinase 2),Os02g0807200 protein,Os11g0565300 protein,Os02g0807900 protein,Os04g0366000 protein,Os07g0169200 protein,Os04g0365100 protein (Fragment),Os04g0599000 protein,Os06g0142500 protein,Os02g0808100 protein (Fragment),Os01g0580150 protein Q7X8B0,Q0E4M0,Q0JAH7,Q6K5W7,Q5Z8V2,A0A0P0VR11,A0A0P0Y3K9,A0A0P0VR62,A0A0P0W961,A0A0P0X2R3,A0A0P0W976,A0A0P0WE85,A0A0P0WSX2,A0A0P0VQZ4,A0A0N7KD78 Q7X8B0_ORYSJ,Q0E4M0_ORYSJ,Q0JAH7_ORYSJ,Q6K5W7_ORYSJ,Q5Z8V2_ORYSJ,A0A0P0VR11_ORYSJ,A0A0P0Y3K9_ORYSJ,A0A0P0VR62_ORYSJ,A0A0P0W961_ORYSJ,A0A0P0X2R3_ORYSJ,A0A0P0W976_ORYSJ,A0A0P0WE85_ORYSJ,A0A0P0WSX2_ORYSJ,A0A0P0VQZ4_ORYSJ,A0A0N7KD78_ORYSJ Os04g0599000 Os04g0599000 OsJ_16021 OSJNBa0083N12.1 OSNPB_040599000,Os02g0111600 Os02g0111600 OSNPB_020111600,Os04g0598900 Os04g0598900 OsJ_16020 OSNPB_040598900,Os02g0811200 Os02g0811200 OSNPB_020811200 P0016F11.13,P0018H04.10 Os06g0705200 OSNPB_060705200,Os02g0807200 OSNPB_020807200,Os11g0565300 OSNPB_110565300,Os02g0807900 OSNPB_020807900,Os04g0366000 OSNPB_040366000,Os07g0169200 OSNPB_070169200,Os04g0365100 OSNPB_040365100,Os04g0599000 OSNPB_040599000,Os06g0142500 OSNPB_060142500,Os02g0808100 OSNPB_020808100,Os01g0580150 OSNPB_010580150 ENOG411DQNE Q9SIH3 Q9SIH3_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein At2g36110) 28307 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein At2g36110) cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2053519; AT2G36110 Pfam:3_5_exonuc Os07g0112400 protein A0A0P0X1K0 A0A0P0X1K0_ORYSJ Os07g0112400 OSNPB_070112400 ENOG411DQND AHL20,AHL19 Q8GWQ2,Q9SR17 AHL20_ARATH,AHL19_ARATH AT-hook motif nuclear-localized protein 20,AT-hook motif nuclear-localized protein 19 DISRUPTION PHENOTYPE: Enhanced susceptibility to Verticillium wilt resulting in wilting, stunting and chlorosis. {ECO:0000269|PubMed:21864046}. FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Negatively regulates plant innate immunity (PTI) to pathogens through the down-regulation of the PAMP-triggered NHO1 and FRK1 expression (PubMed:20738724). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:20738724}.,FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Negatively regulates plant innate immunity (PTI) to pathogens through the down-regulation of the PAMP-triggered FRK1 expression (PubMed:20738724). Positively regulates defense against fungal Verticillium infection (PubMed:21864046). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:20738724, ECO:0000269|PubMed:21864046}. MISCELLANEOUS: Overexpression of AHL20 results in a decreased expression of NHO1 and FRK1 and in an enhanced susceptibility to virulent strain DC3000. {ECO:0000269|PubMed:20738724}.,MISCELLANEOUS: Overexpression of AHL19 results in a decreased flg22-induced expression of FRK1 (PubMed:20738724). Overexpression of AHL19 results in an increased resistance to Verticillium wilt (PubMed:21864046). {ECO:0000269|PubMed:20738724, ECO:0000269|PubMed:21864046}. 29540,32038 AT-hook motif nuclear-localized protein 20,AT-hook motif nuclear-localized protein 19 nucleus [GO:0005634]; AT DNA binding [GO:0003680]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; innate immune response [GO:0045087]; negative regulation of defense response to bacterium [GO:1900425]; negative regulation of innate immune response [GO:0045824]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; AT DNA binding [GO:0003680]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to fungus [GO:0050832]; innate immune response [GO:0045087]; negative regulation of innate immune response [GO:0045824]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Slightly expressed in roots. {ECO:0000269|PubMed:21864046}. locus:505006460;,locus:2084958; AT4G14465,AT3G04570 DNA-binding protein DNA-binding protein-like (Os02g0820800 protein),Os07g0235200 protein (Fragment),AT-hook motif nuclear-localized protein Q6K709,Q0D7L7,Q6ZBX1 Q6K709_ORYSJ,Q0D7L7_ORYSJ,Q6ZBX1_ORYSJ Os02g0820800 OJ1119_A01.2 OSNPB_020820800 P0474F11.17,Os07g0235200 Os07g0235200 OSNPB_070235200,Os08g0563200 Os08g0563200 OSNPB_080563200 P0543D10.26 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000256|PIRNR:PIRNR016021}. ENOG411DQNK F4HQ84 F4HQ84_ARATH Sec34-like family protein R-ATH-6807878;R-ATH-6811438; 88609 Sec34-like family protein cis-Golgi network [GO:0005801]; cytosol [GO:0005829]; Golgi transport complex [GO:0017119]; membrane [GO:0016020]; protein transporter activity [GO:0008565]; Golgi organization [GO:0007030]; Golgi vesicle transport [GO:0048193]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886]; pollen tube growth [GO:0009860] locus:2206890; AT1G73430 conserved oligomeric Golgi complex Os08g0451000 protein (Putative tethering factor SEC34) Q6ZLF0 Q6ZLF0_ORYSJ Os08g0451000 Os08g0451000 OJ1005_H01.29 OsJ_27529 OSNPB_080451000 ENOG411DQNI LCY1 Q38933 LCYB_ARATH Lycopene beta cyclase, chloroplastic (EC 5.5.1.19) FUNCTION: Involved in carotenoid biosynthesis. Catalyzes the double cyclization reaction which converts lycopene to beta-carotene and neurosporene to beta-zeacarotene (PubMed:8837512). Major lycopene beta-cyclase that does not seem to be involved in neoxanthin synthesis (PubMed:19549928). Involved in salt tolerance improvement by increasing synthesis of carotenoids, which impairs reactive oxygen species (ROS) and protects the photosynthetic system under salt stress (PubMed:21471119). {ECO:0000269|PubMed:19549928, ECO:0000269|PubMed:21471119, ECO:0000269|PubMed:8837512}. MISCELLANEOUS: Plants overexpressing LYC1 exhibit improved tolerance to salt stress. {ECO:0000269|PubMed:21471119}. PATHWAY: Carotenoid biosynthesis; beta-carotene biosynthesis.; PATHWAY: Carotenoid biosynthesis; beta-zeacarotene biosynthesis. ARA:AT3G10230-MONOMER;MetaCyc:AT3G10230-MONOMER; 5.5.1.19 56177 Lycopene beta cyclase, chloroplastic (EC 5.5.1.19) chloroplast [GO:0009507]; lycopene beta cyclase activity [GO:0045436]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; carotenoid biosynthetic process [GO:0016117] locus:2076319; AT3G10230 lycopene beta cyclase Os02g0190600 protein (Putative lycopene beta-cyclase) Q6YUU2 Q6YUU2_ORYSJ OSJNBb0031B09.22 Os02g0190600 OSNPB_020190600 ENOG411DQNM INVA,INVC,A Q9FXA8,B9DFA8,A0A1I9LSJ7 INVA_ARATH,INVC_ARATH,A0A1I9LSJ7_ARATH Alkaline/neutral invertase A, mitochondrial (A/N-INVA) (EC 3.2.1.26),Alkaline/neutral invertase C, mitochondrial (A/N-INVC) (EC 3.2.1.26),Plant neutral invertase family protein DISRUPTION PHENOTYPE: Reduced primary root length and number of lateral roots. Reduced plant growth, delayed flowering, increased expression of antioxidant genes under basal conditions and reduced oxygen consumption in the dark. {ECO:0000269|PubMed:21441406, ECO:0000269|PubMed:23135328}.,DISRUPTION PHENOTYPE: Delayed germination time, reduced plant growth, delayed flowering and reduced oxygen consumption in the dark. {ECO:0000269|PubMed:23135328}. atinva mutants have reduced root growth reduced invertase activity and increased expression of antioxidant genes under basal conditions. FUNCTION: Mitochondrial invertase that cleaves sucrose into glucose and fructose and is involved in the regulation of multiple tissue development and floral transition. May generate glucose as a substrate for mitochondria-associated hexokinase, contributing to mitochondrial reactive oxygen species homeostasis. {ECO:0000269|PubMed:21441406}.,FUNCTION: Mitochondrial invertase that cleaves sucrose into glucose and fructose and is involved in the regulation of aerial tissue development and floral transition. May be modulating hormone balance in relation to the radicle emergence. {ECO:0000269|PubMed:23135328}. 3.2.1.26 70437,74722,53342 Alkaline/neutral invertase A, mitochondrial (A/N-INVA) (EC 3.2.1.26),Alkaline/neutral invertase C, mitochondrial (A/N-INVC) (EC 3.2.1.26),Plant neutral invertase family protein mitochondrion [GO:0005739]; glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926]; sucrose alpha-glucosidase activity [GO:0004575]; response to hydrogen peroxide [GO:0042542]; root development [GO:0048364]; sucrose catabolic process [GO:0005987],mitochondrion [GO:0005739]; glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926]; sucrose alpha-glucosidase activity [GO:0004575]; carbohydrate metabolic process [GO:0005975]; circadian rhythm [GO:0007623]; regulation of seed germination [GO:0010029]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510],glycopeptide alpha-N-acetylgalactosaminidase activity [GO:0033926] TISSUE SPECIFICITY: Expressed in seedlings, roots and flowers. {ECO:0000269|PubMed:23135328}. locus:2027600;,locus:2084329; AT1G56560,AT3G06500 invertase Neutral/alkaline invertase 1, mitochondrial (OsNIN1) (EC 3.2.1.26),Os01g0332100 protein (Putative neutral invertase) (cDNA clone:J023002G12, full insert sequence),Os01g0332100 protein (Fragment) Q10MC0,Q5ZA22,A0A0P0V1W0 NIN1_ORYSJ,Q5ZA22_ORYSJ,A0A0P0V1W0_ORYSJ NIN1 Os03g0314800 LOC_Os03g20020,B1140D12.1-1 P0489E06.39-1 Os01g0332100 OSNPB_010332100,Os01g0332100 OSNPB_010332100 FUNCTION: Mitochondrial invertase that cleaves sucrose into glucose and fructose. {ECO:0000269|PubMed:17086397}. ENOG411EFK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF6Y F9E10.16 Q9S7D6 Q9S7D6_ARATH At1g74990 (F25A4.5 protein) (Putative RING zinc finger protein) (Putative RING zinc finger protein; 43117-43530) (RING/U-box superfamily protein) R-ATH-382556;R-ATH-901032; 15234 At1g74990 (F25A4.5 protein) (Putative RING zinc finger protein) (Putative RING zinc finger protein; 43117-43530) (RING/U-box superfamily protein) Derlin-1 retrotranslocation complex [GO:0036513]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ER-associated misfolded protein catabolic process [GO:0071712]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2037294; AT1G74990 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E2I8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferases group 1 Os01g0142300 protein Q5ZBM2 Q5ZBM2_ORYSJ Os01g0142300 OsJ_00324 OSNPB_010142300 P0019D06.13 P0024G09.1 ENOG411E2I6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E2I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 9 NA NA NA NA NA NA NA ENOG411E2I4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GMC oxidoreductase Os03g0118700 protein A0A0N7KGH1 A0A0N7KGH1_ORYSJ Os03g0118700 OSNPB_030118700 ENOG411E2I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os02g0759000 protein (Fragment) Q0DXE5 Q0DXE5_ORYSJ Os02g0759000 Os02g0759000 OSNPB_020759000 ENOG411E2I2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0256000 protein Q6Z592 Q6Z592_ORYSJ Os08g0256000 Os08g0256000 OSJNBa0005L24.10 OSNPB_080256000 ENOG411E2I0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os11g0171000 protein,Os11g0171050 protein A0A0P0XZB9,A0A0N7KSH9 A0A0P0XZB9_ORYSJ,A0A0N7KSH9_ORYSJ Os11g0171000 OSNPB_110171000,Os11g0171050 OSNPB_110171050 ENOG411E2I1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os05g0141300 protein (Putative benzyl alcohol benzoyl transferase),Os01g0350000 protein (Putative benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase BPBT) (cDNA clone:J023102H06, full insert sequence),Os07g0244200 protein (Putative benzoyl coenzyme A) Q75KH0,Q8S222,Q8H5Q7 Q75KH0_ORYSJ,Q8S222_ORYSJ,Q8H5Q7_ORYSJ Os05g0141300 OJ1489_G03.6 OSNPB_050141300,Os01g0350000 Os01g0350000 B1051E10.34 OSNPB_010350000 P0463A02.4,OJ1341_A08.134 Os07g0244200 OsJ_23685 OSNPB_070244200 ENOG411E2IN PFK4 Q9FKG3 PFKA4_ARATH ATP-dependent 6-phosphofructokinase 4, chloroplastic (ATP-PFK 4) (Phosphofructokinase 4) (EC 2.7.1.11) (Phosphohexokinase 4) FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000255|HAMAP-Rule:MF_03186}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4. {ECO:0000255|HAMAP-Rule:MF_03186}. ARA:AT5G61580-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.11; 2.7.1.11 58467 ATP-dependent 6-phosphofructokinase 4, chloroplastic (ATP-PFK 4) (Phosphofructokinase 4) (EC 2.7.1.11) (Phosphohexokinase 4) chloroplast [GO:0009507]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; fructose 6-phosphate metabolic process [GO:0006002]; glycolytic process [GO:0006096] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:17485088}. locus:2151571; AT5G61580 6-phosphofructokinase 4 NA NA NA NA NA NA NA ENOG411E2IM ANS O80449 DIOX4_ARATH Probable 2-oxoglutarate-dependent dioxygenase ANS (EC 1.14.11.-) (Anthocyanidin synthase) FUNCTION: Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins. {ECO:0000250|UniProtKB:Q96323}. ARA:AT2G38240-MONOMER; 1.14.11.- 39681 Probable 2-oxoglutarate-dependent dioxygenase ANS (EC 1.14.11.-) (Anthocyanidin synthase) dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; flavonoid biosynthetic process [GO:0009813] locus:2042942; AT2G38240 2OG-Fe(II) oxygenase superfamily Os11g0437800 protein (Fragment) C7J8Q7 C7J8Q7_ORYSJ Os11g0437800 OSNPB_110437800 ENOG411E2IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Eukaryotic aspartyl protease family protein, expressed (Os03g0317300 protein),Os04g0312500 protein,Os03g0317500 protein Q10MA3,A0A0P0W8K2,A0A0P0VWR5 Q10MA3_ORYSJ,A0A0P0W8K2_ORYSJ,A0A0P0VWR5_ORYSJ Os03g0317300 LOC_Os03g20210 Os03g0317300 OSNPB_030317300,Os04g0312500 OSNPB_040312500,Os03g0317500 OSNPB_030317500 ENOG411E2IK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0521600 protein,Os10g0557650 protein A0A0P0WCW9,A0A0P0XXM4 A0A0P0WCW9_ORYSJ,A0A0P0XXM4_ORYSJ Os04g0521600 OSNPB_040521600,Os10g0557650 OSNPB_100557650 ENOG411E2IH RPP13L2,RPP13L3,RPP13 Q9STE5,Q9STE7,Q9M667 R13L2_ARATH,R13L3_ARATH,RPP13_ARATH Putative disease resistance RPP13-like protein 2,Putative disease resistance RPP13-like protein 3,Disease resistance protein RPP13 (Resistance to Peronospora parasitica protein 13) Altered response to fungal infection-J. Benyon-2000 FUNCTION: Potential disease resistance protein.,FUNCTION: Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars. {ECO:0000269|PubMed:10743658, ECO:0000269|PubMed:11277440}. MISCELLANEOUS: In cv. Nd-1, it confers resistance to Mask-9, Aswa1, Edco1, Emco5 and Goco5 loci from Hyaloperonospora parasitica. In cv. Columbia, it confers resistance to Wela3 locus from Hyaloperonospora parasitica. In cv. RLD, it confers resistance to all of these loci. 98479,98142,97267 Putative disease resistance RPP13-like protein 2,Putative disease resistance RPP13-like protein 3,Disease resistance protein RPP13 (Resistance to Peronospora parasitica protein 13) plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; plant-type hypersensitive response [GO:0009626]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response, incompatible interaction [GO:0009814]; plant-type hypersensitive response [GO:0009626]; signal transduction [GO:0007165] locus:2102857;,locus:504956483;,locus:2075170; AT3G46710,AT3G46730,AT3G46530 Disease resistance protein NA NA NA NA NA NA NA ENOG411E2II PR-1-LIKE Q39186 Q39186_ARATH At2g19990 (Pathogenesis-related protein (PR-1)) (Pathogenesis-related protein 1-like) (Pathogenesis-related protein-1-like protein) 19701 At2g19990 (Pathogenesis-related protein (PR-1)) (Pathogenesis-related protein 1-like) (Pathogenesis-related protein-1-like protein) extracellular region [GO:0005576]; defense response to bacterium [GO:0042742] locus:2005537; AT2G19990 SCP Os10g0191300 protein (Pathogenesis-related protein PRB1-2, putative, expressed) (Putative type-1 pathogenesis-related protein) (cDNA, clone: J100065F02, full insert sequence),Os07g0243800 protein (Putative pathogenesis-related protein),Os07g0125000 protein (Os07g0125600 protein) (Os07g0126401 protein) (Os07g0127600 protein) (Putative pathogenesis-related protein) (cDNA clone:001-112-H01, full insert sequence),Os07g0127800 protein (Putative pathogenesis-related protein),Os07g0127900 protein,Os06g0350600 protein (Fragment),Os07g0244100 protein (Fragment) Q8LMW8,Q8H5R0,Q7EYQ2,Q6YSG9,A0A0P0X260,A0A0P0WW96,A0A0P0X4B6 Q8LMW8_ORYSJ,Q8H5R0_ORYSJ,Q7EYQ2_ORYSJ,Q6YSG9_ORYSJ,A0A0P0X260_ORYSJ,A0A0P0WW96_ORYSJ,A0A0P0X4B6_ORYSJ Os10g0191300 LOC_Os10g11500 Os10g0191300 OSJNBa0040E17.3 OSNPB_100191300,OJ1341_A08.129 Os07g0243800 OsJ_23683 OSNPB_070243800,P0474G09.135 Os07g0125600 Os07g0126401 P0474G09.122 P0474G09.148 Os07g0125000 Os07g0127600 B1249D05.20 B1249D05.4 OJ1212_C12.12 OJ1212_C12.25 OJ1212_C12.41 OsJ_22953 OSNPB_070125000 OSNPB_070125600 OSNPB_070126401 OSNPB_070127600,Os07g0127800 B1249D05.24 OJ1212_C12.45 OSNPB_070127800,Os07g0127900 OSNPB_070127900,Os06g0350600 OSNPB_060350600,Os07g0244100 OSNPB_070244100 ENOG411E2IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NBS-LRR class disease resistance protein (Os11g0688832 protein) (Fragment),Os11g0689000 protein (Fragment) C5NTP2,A0A0P0Y5Q0 C5NTP2_ORYSJ,A0A0P0Y5Q0_ORYSJ Pikm1 Os11g0688832 OSNPB_110688832,Os11g0689000 OSNPB_110689000 ENOG411E2IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain NA NA NA NA NA NA NA ENOG411E2ID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clp amino terminal domain NA NA NA NA NA NA NA ENOG411E2IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os06g0621800 protein C7J4E0 C7J4E0_ORYSJ Os06g0621800 Os06g0621800 OSNPB_060621800 ENOG411E2IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family Os07g0510300 protein,Os07g0510350 protein A0A0P0X658,A0A0P0X6L3 A0A0P0X658_ORYSJ,A0A0P0X6L3_ORYSJ Os07g0510300 OSNPB_070510300,Os07g0510350 OSNPB_070510350 ENOG411E2IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1-aminocyclopropane-1-carboxylate oxidase homolog Os03g0860600 protein (Putative dioxygenase),Os08g0392100 protein (Putative 2-oxoglutarate-dependent oxygenase),Os08g0390700 protein (Fragment),Os03g0690500 protein (Fragment),Os08g0390200 protein (Fragment),Os08g0391700 protein (Fragment),Os08g0392300 protein Q7Y1E3,Q6ZBG4,Q0J5X6,A0A0P0W1N8,A0A0P0XFE8,A0A0P0XG85,A0A0P0XFB3 Q7Y1E3_ORYSJ,Q6ZBG4_ORYSJ,Q0J5X6_ORYSJ,A0A0P0W1N8_ORYSJ,A0A0P0XFE8_ORYSJ,A0A0P0XG85_ORYSJ,A0A0P0XFB3_ORYSJ Os03g0860600 Os03g0860600 OsJ_13456 OSJNBa0033P04.22 OSNPB_030860600,Os08g0392100 Os08g0392100 OSNPB_080392100 P0671F11.33,Os08g0390700 Os08g0390700 OSNPB_080390700,Os03g0690500 OSNPB_030690500,Os08g0390200 OSNPB_080390200,Os08g0391700 OSNPB_080391700,Os08g0392300 OSNPB_080392300 ENOG411E2IA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein UXT homolog Os07g0595800 protein Q84JS9 Q84JS9_ORYSJ P0453E05.102 OJ1710_H11.139 Os07g0595800 OsJ_24979 OSNPB_070595800 ENOG411E2IZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) Os01g0306900 protein Q656E5 Q656E5_ORYSJ Os01g0306900 Os01g0306900 OSJNBb0022N24.15 OSNPB_010306900 ENOG411E2IY ARF18 Q9C5W9,A0A1I9LTM9 ARFR_ARATH,A0A1I9LTM9_ARATH Auxin response factor 18,Auxin response factor FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 67662,61896 Auxin response factor 18,Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2076765; AT3G61830 auxin response factor NA NA NA NA NA NA NA ENOG411E2IV F4IL05 F4IL05_ARATH DTW domain-containing protein 29697 DTW domain-containing protein locus:2054391; AT2G41750 DTW domain-containing protein DTW domain containing protein, expressed (Os12g0142600 protein) (cDNA clone:J013096C01, full insert sequence),DTW domain containing protein (Os11g0145100 protein) Q2QXU5,Q2RAM9 Q2QXU5_ORYSJ,Q2RAM9_ORYSJ Os12g0142600 LOC_Os12g04860 Os12g0142600 OsJ_35191 OSNPB_120142600,LOC_Os11g04850 Os11g0145100 OsJ_32944 OSNPB_110145100 ENOG411E2IW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os02g0603600 protein A0A0P0VLP4 A0A0P0VLP4_ORYSJ Os02g0603600 OSNPB_020603600 ENOG411E2IT NAKR1 Q8LDS4,A0A1P8BFU9 NAKR1_ARATH,A0A1P8BFU9_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 (NaKR1) (Heavy metal-associated plant protein 2) (AtHPP02) (Nuclear-enriched phloem companion cell gene 6) (NPCC6),Heavy metal transport/detoxification superfamily protein Short roots; Late flowering-J. Ward-2010 FUNCTION: Required for root meristem maintenance after germination (PubMed:21193571). Involved in phloem translocation, starch accumulation and flowering (PubMed:21193571). Promotes flowering in the photoperiod pathway (PubMed:27255839). Regulates long-distance movement of FT from leaves to the shoot apex through the phloem stream (PubMed:27255839). {ECO:0000269|PubMed:21193571, ECO:0000269|PubMed:27255839}. 34509,29918 Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 (NaKR1) (Heavy metal-associated plant protein 2) (AtHPP02) (Nuclear-enriched phloem companion cell gene 6) (NPCC6),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; flower development [GO:0009908]; metal ion transport [GO:0030001]; phloem transport [GO:0010233]; root morphogenesis [GO:0010015]; sodium ion homeostasis [GO:0055078],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] DEVELOPMENTAL STAGE: Start to be expressed 1 day after germination (DAG) in the vascular tissue at the root-hypocotyl junction. {ECO:0000269|PubMed:21193571}. TISSUE SPECIFICITY: Expressed in vascular tissues of cotyledons, rosette leaves and roots in developing seedlings before and during the floral transition (PubMed:27255839). Expressed specifically in the phloem companion cells (PubMed:18354040, PubMed:21193571). Not detected in embryos or seeds (PubMed:21193571). Not detected in the vegetative shoot apex (PubMed:27255839). {ECO:0000269|PubMed:18354040, ECO:0000269|PubMed:21193571, ECO:0000269|PubMed:27255839}. locus:2181718; AT5G02600 domain-containing protein Heavy-metal-associated domain-containing protein-like (Os01g0976300 protein) (cDNA clone:002-181-G11, full insert sequence) Q94CS5 Q94CS5_ORYSJ Os01g0976300 OSNPB_010976300 P0020E09.5 P0459B04.35 ENOG411E2IU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S27a Ubiquitin-40S ribosomal protein S27a-1 [Cleaved into: Ubiquitin; 40S ribosomal protein S27a-1] Q9ARZ9 R27AA_ORYSJ RPS27AA Os01g0328400 LOC_Os01g22490 OsJ_01558 P0537A05.41 FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: Ribosomal protein RSP27a-1 is a component of the 40S subunit of the ribosome. MISCELLANEOUS: Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to an ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. ENOG411E2IR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411E2IS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF810) NA NA NA NA NA NA NA ENOG411E2IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3354) NA NA NA NA NA NA NA ENOG411EMIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411EMIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain Os05g0512000 protein Q0DGU0 Q0DGU0_ORYSJ Os05g0512000 Os05g0512000 OsJ_19171 OSNPB_050512000 ENOG411EMIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Lipase class 3-like (Os02g0286200 protein) (cDNA clone:001-007-B05, full insert sequence) Q6KA57 Q6KA57_ORYSJ Os02g0286200 OJ1115_D03.30 OsJ_06281 OSNPB_020286200 ENOG411EMIF MOP9.3,MOP9.2 Q9FIP1,Q9FIP0,Q9FNG0,Q9FNG1 Q9FIP1_ARATH,Q9FIP0_ARATH,Q9FNG0_ARATH,Q9FNG1_ARATH Gb|AAD29063.1 (Lipase class 3-related protein),Alpha/beta-Hydrolases superfamily protein (Gb|AAD29063.1) (Uncharacterized protein At5g24210) 42384,27126,42093,39446 Gb|AAD29063.1 (Lipase class 3-related protein),Alpha/beta-Hydrolases superfamily protein (Gb|AAD29063.1) (Uncharacterized protein At5g24210) hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2151842;,locus:2151847;,locus:2169754;,locus:2169809; AT5G24180,AT5G24190,AT5G24220,AT5G24210 lipase class 3-related NA NA NA NA NA NA NA ENOG411EMIP BARD1 F4I443,F4I442 BARD1_ARATH,F4I442_ARATH BRCA1-associated RING domain protein 1 (AtBARD1) (Protein REPRESSOR OF WUSCHEL 1),Breast cancer associated RING 1 DISRUPTION PHENOTYPE: Enhanced sensitivity to genotoxic stresses (e.g. bleomycin and mitomycin C (MMC)) due to reduced intrachromosomal homologous recombination (HR) (PubMed:16957774). Meristem defects associated with ectopic WUSCHEL expression at high levels (e.g. 238 fold higher than controls) mainly in the outermost cell layers instead of the organizing center (PubMed:18591352). Abnormal quiescent center (QC) in the root apical meristem (RAM) and defects in cell differentiation leading to short roots and loss of gravitropic response, probably due to defect in columella cell differentiation. Ectopic expression of WOX5 in RAM cells that normally express ROW1 (PubMed:25631790). {ECO:0000269|PubMed:16957774, ECO:0000269|PubMed:18591352, ECO:0000269|PubMed:25631790}. Sensitive to mitomycin C. Intrachromosomal homologous recombination is reduced in the mutant plants and less inducible by genotoxic stress.,Mutant meristems develop abnormally.The meristem is enlarged shortly after germination and appears disorganized. Primordia are irregular and lateral organs produced include tubular and finger-like structures. Also affects the development of roots. Primary root growth is inhibited. The root apical meristems are enlarged and lack distinct columella cells or starch granules. Disorganized seedling and rosette growth; Dwarf; Tubular, finger-like structures form instead of leaves; Abnormal SAM organization-Y. Zhu-2008 FUNCTION: Binds specifically to H3K4me3 regions of target genes (e.g. WUS and WOX5) promoters to repress their transcription via chromatin remodeling. Required for the shoot apical meristem (SAM) organization and maintenance, by confining WUS expression to the organizing center, and for the quiescent center (QC) development in the root apical meristem (RAM), by repressing WOX5 expression in the root proximal meristem (PubMed:18591352, PubMed:25631790). Plays a role in DNA repair and in cell-cycle control. Required for the repair of DNA double-strand breaks (DSBs), both natural and induced by genotoxic stress, by homologous recombination (HR) (PubMed:16957774). {ECO:0000269|PubMed:16957774, ECO:0000269|PubMed:18591352, ECO:0000269|PubMed:25631790}. R-ATH-5693607;R-ATH-5693616; 79690,79520 BRCA1-associated RING domain protein 1 (AtBARD1) (Protein REPRESSOR OF WUSCHEL 1),Breast cancer associated RING 1 BRCA1-A complex [GO:0070531]; BRCA1-BARD1 complex [GO:0031436]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; DNA repair [GO:0006281]; double-strand break repair via homologous recombination [GO:0000724]; histone H3-K4 trimethylation [GO:0080182]; leaf development [GO:0048366]; maintenance of root meristem identity [GO:0010078]; maintenance of shoot apical meristem identity [GO:0010492]; negative regulation of fatty acid biosynthetic process [GO:0045717]; negative regulation of histone acetylation [GO:0035067]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of cell cycle arrest [GO:0071158]; positive regulation of histone acetylation [GO:0035066]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; protein-DNA complex assembly [GO:0065004]; regulation of cell proliferation [GO:0042127]; regulation of meristem structural organization [GO:0009934]; transcription, DNA-templated [GO:0006351],metal ion binding [GO:0046872]; DNA repair [GO:0006281] DEVELOPMENTAL STAGE: Expressed specifically in the apical domains of the shoot apical meristem (SAM), inflorescences, ovules, anthers and embryos. In young seedlings, localized mainly in the outermost three to four cell layers of the main shoot apex and in developing leaf primordia and young leaves. Also present in the meristem zone of primary roots and in the initiation site of lateral roots. {ECO:0000269|PubMed:18591352}. TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), roots, flowers, embryos and seedlings (PubMed:18591352). Mostly expressed in flowers and siliques, and, to a lower extent, in roots, rosette leaves, inflorescence and young cauline leaves (PubMed:16957774). {ECO:0000269|PubMed:16957774, ECO:0000269|PubMed:18591352}. locus:2024244; AT1G04020 breast cancer associated RING 1 NA NA NA NA NA NA NA ENOG411EMI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: protein phosphatase 4 regulatory subunit 4 NA NA NA NA NA NA NA ENOG411EMPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif containing protein expressed NA NA NA NA NA NA NA ENOG411EMPT Q8VYW7 Q8VYW7_ARATH AT5g16210/T21H19_130 (HEAT repeat-containing protein) 132309 AT5g16210/T21H19_130 (HEAT repeat-containing protein) locus:2181407; AT5G16210 LisH domain and HEAT repeat-containing protein KIAA1468 homolog HEAT repeat-containing protein-like (Os01g0514300 protein) (cDNA clone:J023064M06, full insert sequence) Q5QMW8 Q5QMW8_ORYSJ Os01g0514300 Os01g0514300 B1075D06.2 OSNPB_010514300 ENOG411EMPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411EMPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA positive regulation of cellular response to phosphate starvation SPX domain-containing protein 2 (Protein SPX DOMAIN GENE 2) (OsSPX2) Q6Z784 SPX2_ORYSJ SPX2 Os02g0202200 LOC_Os02g10780 OsJ_05799 P0419A09.34 FUNCTION: Inhibits PHR2 DNA-binding activity via a Pi-dependent protein interaction (PubMed:25271318). {ECO:0000269|PubMed:25271318}. MISCELLANEOUS: SPX1 and SPX2 have redundant functions in repressing the activity of PHR2. {ECO:0000269|PubMed:25271318}. ENOG411EMPE SPX3 Q5PP62 SPX3_ARATH SPX domain-containing protein 3 (Protein SPX DOMAIN GENE 3) (AtSPX3) FUNCTION: Plays a positive role in plant adaptation to phosphate starvation and exerts negative feedback regulation of SPX1. {ECO:0000269|PubMed:18315545}. 28149 SPX domain-containing protein 3 (Protein SPX DOMAIN GENE 3) (AtSPX3) endoplasmic reticulum [GO:0005783]; cellular response to phosphate starvation [GO:0016036]; positive regulation of cellular response to phosphate starvation [GO:0080040] locus:2055572; AT2G45130 SPX domain gene SPX domain-containing protein 5 (Protein SPX DOMAIN GENE 5) (OsSPX5),Os03g0406100 protein (Fragment) Q7Y0F6,A0A0N7KHF0 SPX5_ORYSJ,A0A0N7KHF0_ORYSJ SPX5 Os03g0406100 LOC_Os03g29250 OsJ_11210 OSJNBa0002D18.21 OSJNBb0074M06.1,Os03g0406100 OSNPB_030406100 FUNCTION: Functional repressor of PHR2 (PubMed:24368504). Involved in maintaining cellular Pi homeostasis when plants are exposed to an external change in Pi (PubMed:24368504). Negatively regulates root-to-shoot Pi translocation redundantly with SPX3 (PubMed:24368504). {ECO:0000269|PubMed:24368504}. ENOG411EMPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA gyrase C-terminal domain beta-propeller Probable DNA gyrase subunit A, chloroplastic/mitochondrial (EC 5.99.1.3),Os03g0812000 protein (Fragment) Q7XZF7,Q0DME7 GYRA_ORYSJ,Q0DME7_ORYSJ GYRA Os03g0812000 LOC_Os03g59750 OSJNBa0024F18.37 OSJNBb0033J23.17,Os03g0812000 OSNPB_030812000 FUNCTION: A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. {ECO:0000250|UniProtKB:P0AES4}. ENOG411EAY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vitamin B6 photo-protection and homoeostasis NA NA NA NA NA NA NA ENOG411EAY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 57 (OsMADS57) Q6Z6W2 MAD57_ORYSJ MADS57 Os02g0731200 LOC_Os02g49840 OsJ_08264 P0617A09.25 DISRUPTION PHENOTYPE: Increased number of tillers. {ECO:0000269|PubMed:23463009}. FUNCTION: Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. ENOG411EAYU Q8VYC2,F4JDK0,A0A1I9LS80 Y2070_ARATH,F4JDK0_ARATH,A0A1I9LS80_ARATH Putative BPI/LBP family protein At3g20270,Lipid-binding serum glycoprotein family protein R-ATH-166016;R-ATH-5686938;R-ATH-6798695;R-ATH-6803157; 56713,80548,52192 Putative BPI/LBP family protein At3g20270,Lipid-binding serum glycoprotein family protein extracellular space [GO:0005615]; lipid binding [GO:0008289],apoplast [GO:0048046]; lipopolysaccharide binding [GO:0001530]; reactive oxygen species biosynthetic process [GO:1903409]; regulation of gene expression [GO:0010468] locus:2092334; AT3G20270 lipid-binding serum glycoprotein family protein NA NA NA NA NA NA NA ENOG411EAYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain Os01g0670600 protein (Fragment) A0A0P0V6F2 A0A0P0V6F2_ORYSJ Os01g0670600 OSNPB_010670600 ENOG411EAYP RGL1 Q9C8Y3 RGL1_ARATH DELLA protein RGL1 (GRAS family protein 9) (AtGRAS-9) (RGA-like protein 1) (RGA-like protein) DISRUPTION PHENOTYPE: Rga, gai, rgl1, rgl2 and rgl3 pentuple mutant displays constitutive GA responses even in the absence of GA treatment. {ECO:0000269|PubMed:23482857}. Resistant to paclobutrazol (inhibitor of GA synthesis)-C. Chang-2002 FUNCTION: Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}. 56754 DELLA protein RGL1 (GRAS family protein 9) (AtGRAS-9) (RGA-like protein 1) (RGA-like protein) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; cell differentiation [GO:0030154]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; negative regulation of seed germination [GO:0010187]; regulation of seed dormancy process [GO:2000033]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in germinating seeds and flowers and siliques. Highly expressed in inflorescences and weakly or not expressed in rosette leaves, etiolated seedlings, siliques, mature stems and roots. RGA and GAI transcripts were detected at slightly varying levels in all tissues examined. RGL2 signal was undetected, and RGL3 signal was very weak in all tissues examined (rosette leaves, seedlings, inflorescences, and siliques) except inflorescences. In the flower, it is expressed in developing ovules as well as in developing anthers throughout microspore development. {ECO:0000269|PubMed:11826301}. locus:2201557; AT1G66350 Transcriptional regulator DELLA protein N terminal NA NA NA NA NA NA NA ENOG411EKXX T9A4.1 O82623 O82623_ARATH DNAJ heat shock N-terminal domain-containing protein (T9A4.1 protein) (Uncharacterized protein AT4g10130) (Uncharacterized protein F28M11.50) 19685 DNAJ heat shock N-terminal domain-containing protein (T9A4.1 protein) (Uncharacterized protein AT4g10130) (Uncharacterized protein F28M11.50) metal ion binding [GO:0046872] locus:2124685; AT4G10130 CSL zinc finger NA NA NA NA NA NA NA ENOG411EKXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aconitate B N-terminal domain NA NA NA NA NA NA NA ENOG411EKXZ IPMI1,IPMI2 Q9LYT7,Q9ZW84 LEUD2_ARATH,LEUD1_ARATH 3-isopropylmalate dehydratase small subunit 2 (EC 4.2.1.33) (AtLEUD2) (Isopropylmalate isomerase small subunit 1),3-isopropylmalate dehydratase small subunit 1 (EC 4.2.1.33) (AtLEUD1) (Isopropylmalate isomerase small subunit 2) FUNCTION: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. Functions redundantly with LEUD1 in aliphatic glucosinolate biosynthesis. {ECO:0000269|PubMed:20663849}.,FUNCTION: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. Functions redundantly with LEUD2 in aliphatic glucosinolate biosynthesis. {ECO:0000269|PubMed:20663849}. PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4. ARA:AT3G58990-MONOMER;,ARA:AT2G43100-MONOMER;MetaCyc:AT2G43100-MONOMER; 4.2.1.33; 4.2.1.33 27208,27043 3-isopropylmalate dehydratase small subunit 2 (EC 4.2.1.33) (AtLEUD2) (Isopropylmalate isomerase small subunit 1),3-isopropylmalate dehydratase small subunit 1 (EC 4.2.1.33) (AtLEUD1) (Isopropylmalate isomerase small subunit 2) chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3-isopropylmalate dehydratase activity [GO:0003861]; glucosinolate biosynthetic process [GO:0019761]; leucine biosynthetic process [GO:0009098] locus:2077685;,locus:2040996; AT3G58990,AT2G43100 Aconitase C-terminal domain NA NA NA NA NA NA NA ENOG411EAYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PEP-utilising enzyme mobile domain NA NA NA NA NA NA NA ENOG411EKXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain DnaJ, putative, expressed (Os03g0300600 protein) (cDNA clone:006-204-F12, full insert sequence) (cDNA clone:006-302-E10, full insert sequence) (cDNA clone:J023038C19, full insert sequence) Q10MP5 Q10MP5_ORYSJ Os03g0300600 LOC_Os03g18870 Os03g0300600 OSNPB_030300600 ENOG411EKXU ERDJ3A Q9SR96 DNJ63_ARATH DnaJ protein ERDJ3A (Chaperone protein dnaJ 63) (AtDjA63) (AtJ63) (Endoplasmic reticulum dnaJ domain-containing protein 3A) (AtERdj3A) (Protein SCJ1 homolog ERDJ3A) (THERMOSENSITIVE MALE STERILE 1, TMS1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (permissive temperature of 22 degrees Celsius), but mutant plants show gametophytic male sterility due to defect in pollen tube growth at temperature of 30 degrees Celsius. {ECO:0000269|PubMed:18718935, ECO:0000269|PubMed:18980646}. Homozygotes have WT phenotype,same as smb-3 single mutant,embryo lethal. Male gametophyte defective; Homozygotes are viable: Severely reduced male fertility at high temperature; Fertility phenotype rescued at low temperature-D. Ye-2009 FUNCTION: Regulates protein folding in the endoplasmic reticulum (ER) lumen. Functions probably as a co-molecular chaperone that is required for normal growth of pollen tubes under high-temperature stress. {ECO:0000269|PubMed:18980646}. 62570 DnaJ protein ERDJ3A (Chaperone protein dnaJ 63) (AtDjA63) (AtJ63) (Endoplasmic reticulum dnaJ domain-containing protein 3A) (AtERdj3A) (Protein SCJ1 homolog ERDJ3A) (THERMOSENSITIVE MALE STERILE 1, TMS1) endoplasmic reticulum lumen [GO:0005788]; plasmodesma [GO:0009506]; oxidoreductase activity [GO:0016491]; cellular response to heat [GO:0034605]; pollen tube growth [GO:0009860]; response to heat [GO:0009408] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, mature pollen grains and growing pollen tubes. {ECO:0000269|PubMed:18718935, ECO:0000269|PubMed:18980646}. locus:2097643; AT3G08970 DnaJ domain NA NA NA NA NA NA NA ENOG411EAYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EAYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0237600 protein,Os05g0240600 protein Q6F343,A0A0P0WJM8 Q6F343_ORYSJ,A0A0P0WJM8_ORYSJ Os05g0237600 OJ1122_B08.2 OJ1384_A02.14 OsJ_17739 OSNPB_050237600,Os05g0240600 OSNPB_050240600 ENOG411EAYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane Fragile-X-F protein Os09g0410400 protein (Fragment) Q0J1V3 Q0J1V3_ORYSJ Os09g0410400 OSNPB_090410400 ENOG411EAYF Q9SV54 Y4289_ARATH UPF0725 protein At4g28920 33787 UPF0725 protein At4g28920 locus:2123533; AT4G28920 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EAYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: chitinase Chitinase III C10701-rice (EC 3.2.1.14) (Os11g0702200 protein) (Xylanase inhibitor protein 1, putative, expressed) (cDNA clone:J033027E14, full insert sequence) (cDNA clone:J033048M21, full insert sequence) (cDNA clone:J033101A20, full insert sequence),Chitinase III C10701-rice (EC 3.2.1.14) (Os11g0701900 protein) (Xylanase inhibitor protein 1, putative, expressed) (cDNA clone:002-105-G04, full insert sequence) Q53NL8,Q53NM0 Q53NL8_ORYSJ,Q53NM0_ORYSJ Os11g0702200 LOC_Os11g47610 Os11g0702200 OSNPB_110702200,LOC_Os11g47590 Os11g0701900 OsJ_34839 OSNPB_110701900 ENOG411EKX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VPS9 NA NA NA NA NA NA NA ENOG411EKX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vps5 C terminal like Os05g0474500 protein A0A0P0WNH2 A0A0P0WNH2_ORYSJ Os05g0474500 OSNPB_050474500 ENOG411EKX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vps5 C terminal like Os01g0827200 protein Q5QLT5 Q5QLT5_ORYSJ Os01g0827200 Os01g0827200 B1088C09.4 OSNPB_010827200 ENOG411E706 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411DS6M Q9M2C8 PP291_ARATH Pentatricopeptide repeat-containing protein At3g61360 56980 Pentatricopeptide repeat-containing protein At3g61360 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; RNA modification [GO:0009451] locus:2098941; AT3G61360 Pentatricopeptide repeat-containing protein Os06g0694600 protein (Pentatricopeptide repeat-containing protein-like) Q5Z8I3 Q5Z8I3_ORYSJ Os06g0694600 OSNPB_060694600 P0550B04.31 P0622F03.6 ENOG411EKTH ndhB2,ndhB1 P0CC33,P0CC32 NU2C2_ARATH,NU2C1_ARATH NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B),NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 A) (NADH-plastoquinone oxidoreductase subunit 2 A) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_00445}. ARA:ATCG01250-MONOMER;,ARA:ATCG00890-MONOMER; 1.6.5.- 57153 NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B),NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 A) (NADH-plastoquinone oxidoreductase subunit 2 A) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038]; ATP synthesis coupled electron transport [GO:0042773]; transport [GO:0006810] ATCG01250,ATCG00890 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B),NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 A) (NADH-plastoquinone oxidoreductase subunit 2 A),Os04g0309100 protein (Fragment),Os04g0473025 protein (Fragment) P0CD23,P0CD22,A0A0P0W8I1,A0A0P0WBC4 NU2C2_ORYSJ,NU2C1_ORYSJ,A0A0P0W8I1_ORYSJ,A0A0P0WBC4_ORYSJ ndhB2,ndhB1 Nip208,Os04g0309100 OSNPB_040309100,Os04g0473025 OSNPB_040473025 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_00445}. ENOG411EKTJ ND2 O05000,Q3EC49 NU2M_ARATH,Q3EC49_ARATH NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH dehydrogenase subunit 2),NADH-Ubiquinone/plastoquinone (Complex I) protein FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. MISCELLANEOUS: Exons a and b (AtMg00285) and c, d and e (AtMg01320) are cis-spliced, while a trans-splicing reaction is required to link exons b and c.; MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07733 and At2g07689) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. ARA:ATMG00285-MONOMER;ARA:ATMG01320-MONOMER;,ARA:AT2G07689-MONOMER; 1.6.5.3 55450,22739 NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH dehydrogenase subunit 2),NADH-Ubiquinone/plastoquinone (Complex I) protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773],integral component of membrane [GO:0016021]; membrane [GO:0016020] locus:2828181; ATMG00285ATMG01320;,AT2G07689 NADH-Ubiquinone/plastoquinone (complex I) various chains NADH dehydrogenase subunit 2 Q8HCM1 Q8HCM1_ORYSJ nad2 ENOG411EKTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Complex 1 protein (LYR family) NA NA NA NA NA NA NA ENOG411EKTR PRFB2 F4I532 PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic (AtPrfB2) FUNCTION: Directs the termination of translation in response to the peptide chain termination codon UGA. Required for the proper translation, stability and normal processing of UGA-containing polycistronic transcripts in chloroplasts. {ECO:0000250|UniProtKB:Q9LVY0}. 53427 Peptide chain release factor PrfB2, chloroplastic (AtPrfB2) chloroplast stroma [GO:0009570]; translation release factor activity, codon specific [GO:0016149] locus:2010748; AT1G56350 Peptide chain release factor Os03g0305700 protein (Peptide chain release factor 2 family protein, expressed) (cDNA clone:J033070I07, full insert sequence) Q10MK3 Q10MK3_ORYSJ LOC_Os03g19300 Os03g0305700 OSNPB_030305700 ENOG411EKTS T16O9.18 Q9C875 Q9C875_ARATH Class I peptide chain release factor (Putative peptide chain release factor) (Uncharacterized protein T16O9.18) 27646 Class I peptide chain release factor (Putative peptide chain release factor) (Uncharacterized protein T16O9.18) chloroplast [GO:0009507]; translation release factor activity [GO:0003747] locus:2006897; AT1G33330 RF-1 domain Os01g0887400 protein A0A0P0VBA3 A0A0P0VBA3_ORYSJ Os01g0887400 OSNPB_010887400 ENOG411EKTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0600200 protein (cDNA clone:J013089P10, full insert sequence),Os02g0600200 protein (Fragment) Q6K5H8,A0A0P0VL92 Q6K5H8_ORYSJ,A0A0P0VL92_ORYSJ OJ1791_B03.17-1 Os02g0600200 OSNPB_020600200,Os02g0600200 OSNPB_020600200 ENOG411EKTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RFC-E_C Os10g0574500 protein A0A0P0XXI5 A0A0P0XXI5_ORYSJ Os10g0574500 OSNPB_100574500 ENOG411EKT9 ABCA2 Q84K47 AB2A_ARATH ABC transporter A family member 2 (ABC transporter ABCA.2) (AtABCA2) (ABC2 homolog 1) ARA:AT3G47730-MONOMER; R-ATH-1369062;R-ATH-382556; 108688 ABC transporter A family member 2 (ABC transporter ABCA.2) (AtABCA2) (ABC2 homolog 1) integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215]; lipid transport [GO:0006869] locus:2100367; AT3G47730 ABC transporter A family member Os08g0398000 protein (Putative ABC transporter) (cDNA clone:J033071F13, full insert sequence) Q6ZIW1 Q6ZIW1_ORYSJ Os08g0398000 Os08g0398000 OJ1198_B10.9 OsJ_27205 OSNPB_080398000 ENOG411EKT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox U-box domain-containing protein 70 (OsPUB70) (Plant U-box protein 70) (Receptor-like cytoplasmic kinase 197) (OsRLCK197) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],Os06g0159600 protein (Putative stress inducible protein),Os06g0159400 protein (Putative stress inducible protein) (cDNA clone:J033033F04, full insert sequence),Os06g0159600 protein,Os06g0159900 protein (Protein kinase-like) (cDNA clone:001-115-B12, full insert sequence),Os06g0163000 protein (Fragment) Q5WA76,Q5VMX1,Q5VMX4,Q5VMX0,Q5VMW9,A0A0P0WTE8 PUB70_ORYSJ,Q5VMX1_ORYSJ,Q5VMX4_ORYSJ,Q5VMX0_ORYSJ,Q5VMW9_ORYSJ,A0A0P0WTE8_ORYSJ PUB70 RLCK197 Os06g0163000 LOC_Os06g06760 OsJ_20227 P0681F10.40,P0702F05.34-1 Os06g0159600 OSNPB_060159600,Os06g0159400 Os06g0159400 OsJ_20203 OSNPB_060159400 P0702F05.32,P0702F05.34-2 Os06g0159600 OSNPB_060159600,Os06g0159900 Os06g0159900 OsJ_20206 OSNPB_060159900 P0681F10.2 P0702F05.37,Os06g0163000 OSNPB_060163000 FUNCTION: Functions as an E3 ubiquitin ligase. Is recruited by MODD to promote ubiquitination of BZIP46, a positive regulator of abscisic acid (ABA) signaling and drought stress tolerance. {ECO:0000269|PubMed:27468891}. ENOG411EKT6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os08g0398300 protein Q0J5V8 Q0J5V8_ORYSJ Os08g0398300 Os08g0398300 OsJ_27206 OSNPB_080398300 ENOG411DV4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cysteine-rich repeat secretory protein Os06g0253600 protein A0A0P0WV78 A0A0P0WV78_ORYSJ Os06g0253600 OSNPB_060253600 ENOG411DV47 RGLG4 Q9SAL0 RGLG4_ARATH E3 ubiquitin-protein ligase RGLG4 (EC 2.3.2.27) (RING domain ligase 4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. The double mutant plants rglg3 and rglg4 show decreased sensitivity to jasmonate. {ECO:0000269|PubMed:22898498}. FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. Acts as upstream modulator of jasmonate (JA) signaling in response to various stimuli, such as JA-inhibited root growth, JA-inductive gene expression, coronatine-mediated pathogen susceptibility, wound-stimulated expression of JA-responsive genes and wound-induced JA biosynthesis (PubMed:22898498). Controls fumonisin B1 (FB1)-triggered programmed cell death (PCD) by modulating the JA signaling pathway. May mediate salicylic acid (SA) suppression of JA signaling in FB1-induced responses (PubMed:25788731). May mediate the formation of 'Lys-48'-linked multiubiquitin chains. Mediates the polyubiquitination and subsequent proteasomal degradation of the target protein GRXS17 (PubMed:27497447). {ECO:0000269|PubMed:22898498, ECO:0000269|PubMed:25788731, ECO:0000269|PubMed:27497447}. 2.3.2.27 43730 E3 ubiquitin-protein ligase RGLG4 (EC 2.3.2.27) (RING domain ligase 4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium [GO:0042742]; jasmonic acid mediated signaling pathway [GO:0009867]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:22898498}. locus:2206395; AT1G79380 E3 ubiquitin-protein ligase RGLG2-like Copine I-like protein (Os08g0135400 protein) (cDNA clone:J033000G10, full insert sequence) Q6YYC5 Q6YYC5_ORYSJ Os08g0135400 OsJ_25957 OSNPB_080135400 P0680F05.38 ENOG411E8QX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0637400 protein (cDNA clone:J013053C20, full insert sequence) Q0DAR2 Q0DAR2_ORYSJ Os06g0637400 Os06g0637400 OsJ_22089 OSNPB_060637400 ENOG411E8QY Q8RY15,A0A1P8B3K6 Q8RY15_ARATH,A0A1P8B3K6_ARATH At4g25580/M7J2_50 (CAP160 protein) (Uncharacterized protein At4g25580),CAP160 protein 66520,65022 At4g25580/M7J2_50 (CAP160 protein) (Uncharacterized protein At4g25580),CAP160 protein plasmodesma [GO:0009506] locus:2131869; AT4G25580 NA NA NA NA NA NA NA NA ENOG411E8QZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8QP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L16p/L10e NA NA NA NA NA NA NA ENOG411E8QR F15G16.50 Q9M372,A0A1I9LLT6 Q9M372_ARATH,A0A1I9LLT6_ARATH Uncharacterized protein F15G16.50,Uncharacterized protein 14475,15665 Uncharacterized protein F15G16.50,Uncharacterized protein locus:2076760; AT3G61660 NA Os01g0656300 protein,Os05g0571900 protein A2ZW57,B9FVA0 A2ZW57_ORYSJ,B9FVA0_ORYSJ Os01g0656300 OsJ_02874 OSNPB_010656300,Os05g0571900 OsJ_22924 OSNPB_050571900 ENOG411E8QS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E8QT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1997) NA NA NA NA NA NA NA ENOG411E8QU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0372900 protein B9FHR9 B9FHR9_ORYSJ Os05g0372900 OsJ_18311 OSNPB_050372900 ENOG411E8QV Q1G3C1 Q1G3C1_ARATH Transmembrane protein 13881 Transmembrane protein integral component of membrane [GO:0016021] locus:4515102872; AT2G20362 NA NA NA NA NA NA NA NA ENOG411E8QW A0A1P8ATX8,A0A1P8B8X3 A0A1P8ATX8_ARATH,A0A1P8B8X3_ARATH Transmembrane protein 16015,20102 Transmembrane protein integral component of membrane [GO:0016021] NA NA NA NA NA NA NA NA ENOG411E8QH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E8QI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0111900 protein (cDNA clone:J033125L13, full insert sequence) Q657G1 Q657G1_ORYSJ Os01g0111900 Os01g0111900 OSJNBb0032H19.3 OSNPB_010111900 P0439B06.29 ENOG411E8QJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0561300 protein B9FI40 B9FI40_ORYSJ Os05g0561300 OsJ_19534 OSNPB_050561300 ENOG411E8QK F11B9.2 Q9C782,F4JC04 Q9C782_ARATH,F4JC04_ARATH Transmembrane protein (Uncharacterized protein F11B9.2),Transmembrane protein 23988,21626 Transmembrane protein (Uncharacterized protein F11B9.2),Transmembrane protein integral component of membrane [GO:0016021] locus:2074608;,locus:504955811; AT3G11060,AT3G06545 NA NA NA NA NA NA NA NA ENOG411E8QM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8QN ALY2 Q8L719 THO4B_ARATH THO complex subunit 4B (ALYREF homolog 2) (AtALY2) FUNCTION: Export adapter involved in nuclear export of spliced and unspliced mRNA. {ECO:0000250}. RNA transport (03013),Spliceosome (03040),mRNA surveillance pathway (03015),Herpes simplex infection (05168) 30780 THO complex subunit 4B (ALYREF homolog 2) (AtALY2) nucleoplasm [GO:0005654]; mRNA binding [GO:0003729]; mRNA transport [GO:0051028] locus:2181763; AT5G02530 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E8QA Q9C7Y9,Q9LSN1 Q9C7Y9_ARATH,Q9LSN1_ARATH At1g47970 (Nucleolin) (Uncharacterized protein At1g47970) (Uncharacterized protein T2J15.12),At3g17160 21847,18314 At1g47970 (Nucleolin) (Uncharacterized protein At1g47970) (Uncharacterized protein T2J15.12),At3g17160 cytosol [GO:0005829] locus:2202599;,locus:2086092; AT1G47970,AT3G17160 NA Os01g0332900 protein A0A0P0V241 A0A0P0V241_ORYSJ Os01g0332900 OSNPB_010332900 ENOG411E8QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N-terminal domain of NEFA-interacting nuclear protein NIP30 NA NA NA NA NA NA NA ENOG411E8QC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0162100 protein) (cDNA clone:001-105-C04, full insert sequence) Q33AV7 Q33AV7_ORYSJ Os10g0162100 LOC_Os10g07450 OsJ_30798 OSNPB_100162100 ENOG411E8QD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxygen evolving enhancer protein 3 (PsbQ) NA NA NA NA NA NA NA ENOG411E8QE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8QF DVL20,ROT4 Q8LBB5,Q7XXN8 Q8LBB5_ARATH,Q7XXN8_ARATH At3g53232 (DVL20) (ROTUNDIFOLIA like 1),At2g36985 (DVL family protein) (DVL16) (Uncharacterized protein ROT4) Short leaves. Both petiole and blade are shortened and blade is more rounded. Reduced cell proliferation along the leaf margins. 6535,6238 At3g53232 (DVL20) (ROTUNDIFOLIA like 1),At2g36985 (DVL family protein) (DVL16) (Uncharacterized protein ROT4) shoot system development [GO:0048367],plasma membrane [GO:0005886]; regulation of cell proliferation [GO:0042127]; shoot system development [GO:0048367] locus:1006230270;,locus:1006230132; AT3G53232,AT2G36985 DVL family NA NA NA NA NA NA NA ENOG411E8QG ATA7 F4JL89 ATA7_ARATH Protein ARABIDOPSIS THALIANA ANTHER 7 (AtA7) (Non-specific lipid transfer protein Y.4) (AtLtpY.4) 15597 Protein ARABIDOPSIS THALIANA ANTHER 7 (AtA7) (Non-specific lipid transfer protein Y.4) (AtLtpY.4) endoplasmic reticulum lumen [GO:0005788]; membrane [GO:0016020]; lipid transporter activity [GO:0005319]; lipid transport [GO:0006869]; pollen sperm cell differentiation [GO:0048235] TISSUE SPECIFICITY: Tapetum-specific (PubMed:9687065, PubMed:24096413). Also present in pollen (PubMed:24096413). {ECO:0000269|PubMed:24096413, ECO:0000269|PubMed:9687065}. locus:505006530; AT4G28395 NA NA NA NA NA NA NA NA ENOG411E8Q8 T14E10_120 Q9M1H2 Q9M1H2_ARATH DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) (Uncharacterized protein T14E10_120) 32787 DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) (Uncharacterized protein T14E10_120) DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2096946; AT3G54550 Protein of unknown function (DUF506) NA NA NA NA NA NA NA ENOG411E8Q9 F1P2.60 Q9SN87 Q9SN87_ARATH Transmembrane protein (Uncharacterized protein F1P2.60) 9736 Transmembrane protein (Uncharacterized protein F1P2.60) integral component of membrane [GO:0016021] locus:2079167; AT3G47510 NA NA NA NA NA NA NA NA ENOG411E8Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Q1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0192100 protein,Os08g0192300 protein B9FZG4,Q6Z1C5 B9FZG4_ORYSJ,Q6Z1C5_ORYSJ Os08g0192100 OsJ_26319 OSNPB_080192100,Os08g0192300 OsJ_26321 OSJNBa0056O06.16 OSNPB_080192300 ENOG411E8Q2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Q3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411E8Q4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Q5 MAC9.2 Q9FLT7 Q9FLT7_ARATH Cotton fiber protein 17916 Cotton fiber protein locus:2159233; AT5G61710 NA NA NA NA NA NA NA NA ENOG411E8Q6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial protein of unknown function (DUF924) NA NA NA NA NA NA NA ENOG411E3M9 F4II37,F4II38 F4II37_ARATH,F4II38_ARATH Nucleic acid-binding, OB-fold-like protein 19106,14717 Nucleic acid-binding, OB-fold-like protein nucleus [GO:0005634]; translation initiation factor activity [GO:0003743],translation initiation factor activity [GO:0003743] locus:2064864; AT2G40780 RNA binding protein LOC496359 protein, putative, expressed (Os03g0114200 protein) (cDNA clone:002-134-G09, full insert sequence) Q8GZX2 Q8GZX2_ORYSJ OSJNBa0090O10.11 LOC_Os03g02310 Os03g0114200 OsJ_09157 OSNPB_030114200 ENOG411E3M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E3M7 NFYB3 O23310 NFYB3_ARATH Nuclear transcription factor Y subunit B-3 (AtNF-YB-3) (Transcriptional activator HAP3C) FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. 17186 Nuclear transcription factor Y subunit B-3 (AtNF-YB-3) (Transcriptional activator HAP3C) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. locus:2129885; AT4G14540 Transcription factor Nuclear transcription factor Y subunit B-8 (OsNF-YB8) (Transcriptional activator HAP3I) (OsHAP3I),Nuclear transcription factor Y subunit B-10 (OsNF-YB10) (Transcriptional activator HAP3F) (OsHAP3F) Q75IZ7,Q69J40 NFYB8_ORYSJ,NFYBA_ORYSJ NFYB8 HAP3I Os03g0413000 LOC_Os03g29970,NFYB10 HAP3F Os07g0606600 LOC_Os07g41580 OSJNBa0072I06.11 P0493C06.26 FUNCTION: Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. ENOG411E3M6 WOX2 Q6X7K1 WOX2_ARATH WUSCHEL-related homeobox 2 30-50% of embryos display abnormal apical development. Some cells in 4-cell to 16-cell stage embryos fail to divide. From the 16-cell stage on embryos additionally showed aberrant oblique cell divisions not observed in the wild type. At the mid-globular stage embryos started to recover by forming a protoderm and eventually gave rise to fertile plants. Embryo defective; Cotyledon; Abnormal cell patterning; Homozygotes appear wild type-T. Laux-2004 FUNCTION: Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. 29183 WUSCHEL-related homeobox 2 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; apical cell fate commitment [GO:0010654]; cotyledon boundary formation [GO:0090451]; cotyledon development [GO:0048825]; embryonic pattern specification [GO:0009880]; longitudinal axis specification [GO:0009942]; positive regulation of cell proliferation [GO:0008284]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac, but not in the synergids, the antipodals or the male gametophyte. After fertilization, it is expressed in the zygote. After the first division of the zygote, it is detected exclusively in the apical daughter cell, while WOX8 is expressed in the basal daughter cell. Subsequently, it is expressed in all cells of the 4-cell embryo proper and predominantly in the apical domain of the 8-cell embryo. However, in some 8-cell embryos a it is also weakly expressed in the central domain suggesting that expression shifts to the most apical cells during this stage. Expression remains restricted to the apical domain in the 16-cell embryo and the early-globular stage. Not expressed in the apical domain thereafter. However, in heart stage embryos it is weakly expressed in a ring of epidermal cells approximately at the junction of hypocotyl and root. Not expressed in mature embryos, endosperm or postembryonically in inflorescences. {ECO:0000269|PubMed:14711878}. locus:2168504; AT5G59340 homeobox WUSCHEL-related homeobox 5 (OsWOX5) (Protein WOX2),Os01g0840300 protein (Fragment) Q8LR86,A0A0P0VAA0 WOX5_ORYSJ,A0A0P0VAA0_ORYSJ WOX5 Os01g0840300 LOC_Os01g62310 P0408C03.23,Os01g0840300 OSNPB_010840300 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411E3M4 F12A12.150 Q9SNB5 Q9SNB5_ARATH DCL protein (DUF3223) (Uncharacterized protein At3g46630) (Uncharacterized protein At3g46630/F12A12_150) (Uncharacterized protein F12A12.150) 24192 DCL protein (DUF3223) (Uncharacterized protein At3g46630) (Uncharacterized protein At3g46630/F12A12_150) (Uncharacterized protein F12A12.150) chloroplast [GO:0009507] locus:2075190; AT3G46630 Protein of unknown function (DUF3223) Os08g0308700 protein (Putative DCL protein) (Putative defective chloroplasts and leaves (DCL) protein) Q6UUF7 Q6UUF7_ORYSJ B1052H09.115 Os08g0308700 OSJNBa0038J12.12 OSNPB_080308700 ENOG411E3M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP Os12g0633400 protein (SCP-like extracellular protein, expressed) (cDNA clone:J023138C13, full insert sequence) Q2QLQ1 Q2QLQ1_ORYSJ LOC_Os12g43700 Os12g0633400 OSNPB_120633400 ENOG411E3M2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os05g0350900 protein (Fragment) A0A0P0WL63 A0A0P0WL63_ORYSJ Os05g0350900 OSNPB_050350900 ENOG411E3M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family 18.9 kDa heat shock protein (OsHsp18.9) Q0E4A8 HS189_ORYSJ HSP18.9 Os02g0128000 LOC_Os02g03570 OsJ_05223 P0482F12.31 P0576F08.4 ENOG411E3M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease CAF1 family ribonuclease containing protein (Os10g0128300 protein) (Putative CCR4-associated factor 1),Os10g0123900 protein Q8S804,A0A0P0XR79 Q8S804_ORYSJ,A0A0P0XR79_ORYSJ OSJNBa0020E23.20 Os10g0128300 LOC_Os10g03880 OsJ_30604 OSNPB_100128300,Os10g0123900 OSNPB_100123900 ENOG411E3MZ Q945P6 Q945P6_ARATH At2g24550/F25P17.15 (Major centromere autoantigen B-like protein) (Uncharacterized protein At2g24550) 27247 At2g24550/F25P17.15 (Major centromere autoantigen B-like protein) (Uncharacterized protein At2g24550) locus:2046673; AT2G24550 Inherit from KOG: Rna binding protein Os09g0499000 protein (cDNA clone:006-308-E08, full insert sequence) Q0J0U2 Q0J0U2_ORYSJ Os09g0499000 Os09g0499000 OSNPB_090499000 ENOG411E3MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH OSJNBa0017B10.16 protein (Os04g0565900 protein) (cDNA clone:002-155-A07, full insert sequence),Os12g0180800 protein Q7XQJ2,A0A0P0Y7U7 Q7XQJ2_ORYSJ,A0A0P0Y7U7_ORYSJ Os04g0565900 Os04g0565900 OsJ_15804 OSJNBa0017B10.16 OSNPB_040565900,Os12g0180800 OSNPB_120180800 ENOG411E3MV GIG1,PYM Q9M2R1,O48533 GIG1_ARATH,PYM_ARATH Protein GIGAS CELL1 (Protein ENHANCER OF BON1-2 30) (Protein OMISSION OF SECOND DIVISION1) (Protein UV-B-INSENSITIVE 4-like),Protein POLYCHOME (Protein UV-B-INSENSITIVE 4) DISRUPTION PHENOTYPE: Ectopic endomitosis during somatic cell division leading to gigas cells, large guard cells, and round cells containing large polyploid nuclei in cotyledons. Enhancer of the myb3r4 mutant phenotype. Enhancer of bon1-2 phenotype, leading to dwarf and bushy phenotype with many lateral shoots. Production of diploid gametes by skipping the second meiotic division; male meiosis leads to dyads instead of tetrads, and selfed progeny provides tetraploids (4n) and triploids (3n), but no diploid (2n) plants. {ECO:0000269|PubMed:19513101, ECO:0000269|PubMed:22167058, ECO:0000269|PubMed:22844260, ECO:0000269|PubMed:22899078, ECO:0000269|PubMed:23345424}.,DISRUPTION PHENOTYPE: Premature occurrence of endoreplication during organ development leading to an increased DNA content in hypocotyls and trichomes associated with an increased branching of trichomes (e.g. four to five branches). Reduced accumulation of CYCA2-3 during the S phase leading to a premature exit from the cell cycle, thus triggering the onset of the endocycle. Increased tolerance towards ultraviolet B light (UVB), probably due to the enhanced polyploidization. Considerably larger average cell area in the leaf adaxial epidermis leading to fewer but larger epidermal cells. {ECO:0000269|PubMed:10224275, ECO:0000269|PubMed:16623893, ECO:0000269|PubMed:22167058, ECO:0000269|PubMed:22167059, ECO:0000269|PubMed:22899078}. produces diploid gametes by skipping the second meiotic division.,Fresh weight of mutant plants was 2.1 times higher than that of the wild-type plants when grown under supplemental UV-B light. Mutant plants were less sensitive to UV-B light. In addition the mutant plants have overbranching trichomes on their leaves and stems. Trichomes with more than five branches were often seen on mutant leaves but were never found on the wild-type leaves. Dyad pollen; Increased ploidy levels-R. Mercier-2009,Increased trichome branching; Resistant to UV-B light-A. Tanaka-2006 FUNCTION: Negative regulator of the anaphase-promoting complex/cyclosome (APC/C) ubiquitin ligase required for proper mitotic and meiotic progression and cell fate determination. Involved in entry into both meiosis I and meiosis II. Prevents endomitosis by preferentially inhibiting APC/C(CDC20). Required for megagametophyte and endosperm development. Triggers mitotic cyclins (e.g. CYCB1-1 and CYCB1-2) accumulation. Confers immunity to bacterial pathogens (e.g. Pseudomonas syringae pv. tomato DC3000), which is associated with increased expression of disease resistance (R) genes. GIG1 and PANS1 are part of a network linking centromere cohesion and cell cycle progression through control of APC/C activity. {ECO:0000269|PubMed:19513101, ECO:0000269|PubMed:22167058, ECO:0000269|PubMed:22844260, ECO:0000269|PubMed:22899078, ECO:0000269|PubMed:23345424, ECO:0000269|PubMed:26272661}.,FUNCTION: Negative regulator of the anaphase-promoting complex/cyclosome (APC/C) ubiquitin ligase required for proper mitotic progression and cell fate determination; inhibits premature cell differentiation. Prevents DNA endoreplication by promoting the maintenance of the mitotic state by preferentially inhibiting APC/C(FZR) and triggering cyclins accumulation (e.g. CYCB1-1, CYCB1-2 and CYCA2-3) in a temporal manner. Required for megagametophyte and endosperm development. Counteracts the activity of CCS52A1 thus inhibiting the turnover of CYCA2-3. Confers immunity to bacterial pathogens (e.g. Pseudomonas syringae pv. tomato DC3000), which is associated with increased expression of disease resistance (R) genes. {ECO:0000269|PubMed:10224275, ECO:0000269|PubMed:16623893, ECO:0000269|PubMed:22167058, ECO:0000269|PubMed:22167059, ECO:0000269|PubMed:22899078, ECO:0000269|PubMed:23345424}. 26995,28731 Protein GIGAS CELL1 (Protein ENHANCER OF BON1-2 30) (Protein OMISSION OF SECOND DIVISION1) (Protein UV-B-INSENSITIVE 4-like),Protein POLYCHOME (Protein UV-B-INSENSITIVE 4) nucleus [GO:0005634]; cell division [GO:0051301]; defense response [GO:0006952]; DNA replication [GO:0006260]; endomitotic cell cycle [GO:0007113]; endosperm development [GO:0009960]; megagametogenesis [GO:0009561]; meiosis I [GO:0007127]; meiosis II [GO:0007135]; negative regulation of ubiquitin protein ligase activity [GO:1904667]; positive regulation of defense response to bacterium [GO:1900426]; regulation of meiotic nuclear division [GO:0040020]; regulation of mitotic nuclear division [GO:0007088],nucleus [GO:0005634]; cell division [GO:0051301]; defense response [GO:0006952]; DNA endoreduplication [GO:0042023]; endosperm development [GO:0009960]; megagametogenesis [GO:0009561]; negative regulation of ubiquitin protein ligase activity [GO:1904667]; positive regulation of defense response to bacterium [GO:1900426]; regulation of nuclear division [GO:0051783]; response to UV-B [GO:0010224]; trichome branching [GO:0010091] DEVELOPMENTAL STAGE: Levels fade progressively in a basipetal fashion as the leaf develops. In the epidermis of cotyledons and leaves, observed in dividing and recently divided stomatal precursor cells, especially in dividing guard mother cells and young guard cells. Also present in asymmetrically dividing meristemoid mother cells and meristemoids. In roots, expressed preferentially in the division zones of root tips. {ECO:0000269|PubMed:16623893, ECO:0000269|PubMed:22167058}.,DEVELOPMENTAL STAGE: Levels fade progressively in a basipetal fashion as the leaf develops. {ECO:0000269|PubMed:16623893}. TISSUE SPECIFICITY: Expressed in rapidly dividing tissues such as shoot apical meristem and young leaves. Associated with cell division but also with specific cell types. {ECO:0000269|PubMed:22167058}.,TISSUE SPECIFICITY: Expressed mainly in actively dividing cells (e.g. central cylinder of the root tip, young leaves and vascular tissues). {ECO:0000269|PubMed:16623893}. locus:2095823;,locus:2060035; AT3G57860,AT2G42260 NA NA NA NA NA NA NA NA ENOG411E3MU Q94AC6,Q9ZVX0 Q94AC6_ARATH,Q9ZVX0_ARATH AT5g15220/F8M21_110 (Ribosomal protein L27 family protein),50S ribosomal protein L27 (At2g16930) (Putative 50S ribosomal protein L27) (Ribosomal protein L27 family protein) 16700,16678 AT5g15220/F8M21_110 (Ribosomal protein L27 family protein),50S ribosomal protein L27 (At2g16930) (Putative 50S ribosomal protein L27) (Ribosomal protein L27 family protein) ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2150881;,locus:2039390; AT5G15220,AT2G16930 ribosomal protein Mitochondrial ribosomal protein L27 (Os08g0404200 protein) (Os08g0404250 protein) (Os08g0404300 protein) (Putative 50S ribosomal protein L27) (cDNA clone:001-110-H03, full insert sequence),OSJNBa0041M06.7 protein (OSJNBb0062H02.1 protein) (Os04g0321500 protein) Q6ZKP0,Q7XMA7 Q6ZKP0_ORYSJ,Q7XMA7_ORYSJ mtRPL27a mtRPL27b Os08g0404200 Os08g0404250 Os08g0404300 OJ1118_A03.19 OJ1118_A03.21 OsJ_14261 OSNPB_080404200 OSNPB_080404300 P0685B10.11 P0685B10.9,Os04g0321500 OSJNBa0041M06.7 OSJNBb0062H02.1 OSNPB_040321500 ENOG411E3MT HIPP24 O81464 HIP24_ARATH Heavy metal-associated isoprenylated plant protein 24 (AtHIP24) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 16904 Heavy metal-associated isoprenylated plant protein 24 (AtHIP24) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2133544; AT4G08570 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E3MS Q8LCC7,Q94AF6,Q9SU26,F4K455,F4JRD3,F4K456 Q8LCC7_ARATH,Q94AF6_ARATH,Q9SU26_ARATH,F4K455_ARATH,F4JRD3_ARATH,F4K456_ARATH At4g22380 (Ribosomal protein L7Ae-like) (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein),AT5g20160/F5O24_50 (Ribosomal protein L7Ae-like) (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein),AT4g12600/T1P17_190 (Ribosomal protein L7Ae-like) (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein),Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein R-ATH-6791226;R-ATH-72163;R-ATH-72165; 13915,13897,13999,17633,20308,12128 At4g22380 (Ribosomal protein L7Ae-like) (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein),AT5g20160/F5O24_50 (Ribosomal protein L7Ae-like) (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein),AT4g12600/T1P17_190 (Ribosomal protein L7Ae-like) (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein),Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein box C/D snoRNP complex [GO:0031428]; nucleolus [GO:0005730]; precatalytic spliceosome [GO:0071011]; ribosome [GO:0005840]; small-subunit processome [GO:0032040]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; RNA binding [GO:0003723]; maturation of LSU-rRNA [GO:0000470]; maturation of SSU-rRNA [GO:0030490]; mRNA splicing, via spliceosome [GO:0000398],nucleolus [GO:0005730]; ribosome [GO:0005840]; RNA binding [GO:0003723]; ribosome biogenesis [GO:0042254],box C/D snoRNP complex [GO:0031428]; integral component of membrane [GO:0016021]; nucleolus [GO:0005730]; precatalytic spliceosome [GO:0071011]; ribosome [GO:0005840]; small-subunit processome [GO:0032040]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; RNA binding [GO:0003723]; maturation of LSU-rRNA [GO:0000470]; maturation of SSU-rRNA [GO:0030490]; mRNA splicing, via spliceosome [GO:0000398],box C/D snoRNP complex [GO:0031428]; cytosol [GO:0005829]; precatalytic spliceosome [GO:0071011]; ribosome [GO:0005840]; small-subunit processome [GO:0032040]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; RNA binding [GO:0003723]; maturation of LSU-rRNA [GO:0000470]; maturation of SSU-rRNA [GO:0030490]; mRNA splicing, via spliceosome [GO:0000398],integral component of membrane [GO:0016021]; nucleolus [GO:0005730]; ribosome [GO:0005840]; RNA binding [GO:0003723] locus:2127455;,locus:2149269;,locus:2135650; AT4G22380,AT5G20160,AT4G12600 Ribosomal protein L7Ae L30e S12e Gadd45 family protein NHP2-like protein 1, putative, expressed (Os03g0241200 protein) Q10PA5 Q10PA5_ORYSJ LOC_Os03g13800 Os03g0241200 OsJ_10092 OSNPB_030241200 ENOG411E3MR RPL12B,RPL12A,RPL12C P36211,P36210,P36212 RK122_ARATH,RK121_ARATH,RK123_ARATH 50S ribosomal protein L12-2, chloroplastic (CL12-B),50S ribosomal protein L12-1, chloroplastic (CL12-A),50S ribosomal protein L12-3, chloroplastic (CL12-C) 20593,20075,19682 50S ribosomal protein L12-2, chloroplastic (CL12-B),50S ribosomal protein L12-1, chloroplastic (CL12-A),50S ribosomal protein L12-3, chloroplastic (CL12-C) chloroplast [GO:0009507]; plastid large ribosomal subunit [GO:0000311]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; nucleoid [GO:0009295]; plasmodesma [GO:0009506]; plastid large ribosomal subunit [GO:0000311]; thylakoid [GO:0009579]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; plastid large ribosomal subunit [GO:0000311]; thylakoid [GO:0009579]; structural constituent of ribosome [GO:0003735]; defense response to bacterium [GO:0042742]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:2086440;,locus:2086435;,locus:2086450; AT3G27840,AT3G27830,AT3G27850 ribosomal protein 50S ribosomal protein L12, chloroplastic (CL12),Os05g0568300 protein (Putative 50S ribosomal protein L12) (Ribosomal protein L12),Os01g0662300 protein O22386,Q9ZWF5,A0A0N7KDG4 RK12_ORYSJ,Q9ZWF5_ORYSJ,A0A0N7KDG4_ORYSJ RPL12-2 Os01g0662300 LOC_Os01g47330 P0671D01.26,rpl12-1 Os05g0568300 OJ1781_H11.20 OSJNBa0040E06.2 OSNPB_050568300,Os01g0662300 OSNPB_010662300 ENOG411E3MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Os07g0633100 protein (Fragment) A0A0P0X9F6,A0A0P0X9B4 A0A0P0X9F6_ORYSJ,A0A0P0X9B4_ORYSJ Os07g0633100 OSNPB_070633100 ENOG411E3MK AHP4 Q9LU15,F4J1I8 AHP4_ARATH,F4J1I8_ARATH Histidine-containing phosphotransfer protein 4,HPT phosphotransmitter 4 FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay. {ECO:0000269|PubMed:11193423, ECO:0000269|PubMed:12068096, ECO:0000269|PubMed:14981318}. 14669,16824 Histidine-containing phosphotransfer protein 4,HPT phosphotransmitter 4 cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein histidine kinase binding [GO:0043424]; signal transducer activity [GO:0004871]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160],cytoplasm [GO:0005737]; nucleus [GO:0005634]; histidine phosphotransfer kinase activity [GO:0009927]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160] TISSUE SPECIFICITY: Predominantly expressed in aerial parts of the plant. {ECO:0000269|PubMed:14981318}. locus:2094972; AT3G16360 histidine-containing phosphotransfer protein Pseudo histidine-containing phosphotransfer protein 1 (OsHpt1),Os01g0743800 protein Q0JJE3,A0A0P0V814 PHP1_ORYSJ,A0A0P0V814_ORYSJ PHP1 Os01g0743800 LOC_Os01g54050 OSJNBa0014K08.3 P0439E07.36,Os01g0743800 OSNPB_010743800 DISRUPTION PHENOTYPE: Dwarf, narrow leaf and small grain phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction. {ECO:0000250|UniProtKB:Q8L9T7}. ENOG411E3MJ Q9SJI0 Q9SJI0_ARATH At2g42760 (DUF1685 family protein) (Uncharacterized protein At2g42760) 30578 At2g42760 (DUF1685 family protein) (Uncharacterized protein At2g42760) locus:2052415; AT2G42760 NA NA NA NA NA NA NA NA ENOG411E3MI MYB118,MYB115,MYB100,MYB22 Q9LVW4,Q1PDP9,Q9S754,Q9SPH0 MY118_ARATH,MY115_ARATH,Q9S754_ARATH,Q9SPH0_ARATH Transcription factor MYB118 (Myb-related protein 118) (AtMYB118) (Protein PLANT GROWTH ACTIVATOR 37),Transcription factor MYB115 (Myb-related protein 115) (AtMYB115),Myb domain protein 100 (Putative MYB family transcription factor) (Putative transcription factor),At5g40430 (Myb domain protein 22) (Putative transcription factor) (Transcription factor) DISRUPTION PHENOTYPE: Single and myb118 myb115 double mutants do not show apparent developmental abnormalities (PubMed:18695688, PubMed:25194028). Reduced omega-7 fatty acids accumulation in the endosperm. The endosperm oil of double mutant myb115 myb118 lacks omega-7 fatty acids (PubMed:27681170). Endosperm-specific derepression of maturation-related genes associated with a partial relocation of storage compounds from the embryo to the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.,DISRUPTION PHENOTYPE: Single and myb118 myb115 double mutants do not show apparent developmental abnormalities (PubMed:18695688). The endosperm oil of double mutant myb115 myb118 lacks omega-7 fatty acids (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}. FUNCTION: Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.,FUNCTION: Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}. 49492,41600,27281,30088 Transcription factor MYB118 (Myb-related protein 118) (AtMYB118) (Protein PLANT GROWTH ACTIVATOR 37),Transcription factor MYB115 (Myb-related protein 115) (AtMYB115),Myb domain protein 100 (Putative MYB family transcription factor) (Putative transcription factor),At5g40430 (Myb domain protein 22) (Putative transcription factor) (Transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; endosperm development [GO:0009960]; fatty acid homeostasis [GO:0055089]; negative regulation of endosperm development [GO:1904095]; negative regulation of seed maturation [GO:2000692]; positive regulation of fatty acid biosynthetic process [GO:0045723]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of unsaturated fatty acid biosynthetic process [GO:2001280]; regulation of embryonic development [GO:0045995]; regulation of endosperm development [GO:2000014]; regulation of glucosinolate biosynthetic process [GO:0010439]; regulation of seed maturation [GO:2000034]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; endosperm development [GO:0009960]; fatty acid homeostasis [GO:0055089]; positive regulation of fatty acid biosynthetic process [GO:0045723]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of unsaturated fatty acid biosynthetic process [GO:2001280]; regulation of endosperm development [GO:2000014]; regulation of glucosinolate biosynthetic process [GO:0010439]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed in embryos from the early heart stage and throughout embryogenesis (PubMed:18695688, PubMed:19066902). Induced at the onset of the maturation phase in the endosperm, in a high and homogeneous repartition (PubMed:18695688, PubMed:19066902, PubMed:25194028, PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.,DEVELOPMENTAL STAGE: Induced at the onset of the maturation phase in the endosperm at low levels in a heterogeneous repartition, particularly in the chalazal endosperm. Also detected in pollen grains. {ECO:0000269|PubMed:27681170}. TISSUE SPECIFICITY: Mainly expressed in siliques (PubMed:18695688, PubMed:19066902). Also detected at low levels in leaves and flowers (PubMed:19066902). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902}.,TISSUE SPECIFICITY: Accumulates in reproductive organs (e.g. flowers and siliques) (PubMed:18695688, PubMed:27681170). Expressed at very low levels in vegetative organs (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}. locus:2829519;,locus:2170583;,locus:2059516;,locus:2170568; AT3G27785,AT5G40360,AT2G25230,AT5G40430 transcription factor Os12g0175000 protein A0A0P0Y7N5 A0A0P0Y7N5_ORYSJ Os12g0175000 OSNPB_120175000 ENOG411E3MG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0497 membrane protein CASP-like protein 4A2 (OsCASPL4A2),CASP-like protein (Fragment) A3A2W2,A0A0P0VEL3 CSPLO_ORYSJ,A0A0P0VEL3_ORYSJ Os02g0134500 LOC_Os02g04180 OsJ_05284,Os02g0134500 OSNPB_020134500 ENOG411E3MF A0A1P8B457,F4IS76,F4JMH6 A0A1P8B457_ARATH,F4IS76_ARATH,F4JMH6_ARATH Leukocyte receptor cluster-like protein,Uncharacterized protein 28648,42441,67209 Leukocyte receptor cluster-like protein,Uncharacterized protein locus:2056665;,locus:2130769; AT2G03010,AT4G16530 NA Os10g0507500 protein A0A0P0XW29 A0A0P0XW29_ORYSJ Os10g0507500 OSNPB_100507500 ENOG411E3ME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRC Os02g0487300 protein (cDNA clone:002-131-C10, full insert sequence),Os02g0488100 protein,Expressed protein (Os10g0446100 protein) (cDNA clone:J023035J22, full insert sequence) Q6K5M3,Q6K5L5,Q7XDY7 Q6K5M3_ORYSJ,Q6K5L5_ORYSJ,Q7XDY7_ORYSJ Os02g0487300 OsJ_06773 OSNPB_020487300 P0677G01.24,Os02g0488100 OSNPB_020488100 P0483C08.18 P0677G01.42,LOC_Os10g30890 Os10g0446100 OSNPB_100446100 ENOG411E3MB Q9FE18 Q9FE18_ARATH Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) 5.2.1.8 14857 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2197970; AT1G26550 Peptidyl-prolyl cis-trans isomerase Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) Q6ESK5 Q6ESK5_ORYSJ Os09g0411700 OJ1294_G06.19 OSNPB_090411700 ENOG411EEXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitchondrion orf173 Q8HCM5 Q8HCM5_ORYSJ orf173 P0557A01.36 ENOG411DSX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein Os04g0505700 protein (Fragment) Q0JBW9 Q0JBW9_ORYSJ Os04g0505700 Os04g0505700 OSNPB_040505700 ENOG411DSX5 Q9C7F4 Q9C7F4_ARATH AT1G27990 protein (Transmembrane protein) (Uncharacterized protein F13K9.9) 29761 AT1G27990 protein (Transmembrane protein) (Uncharacterized protein F13K9.9) integral component of membrane [GO:0016021] locus:2010419; AT1G27990 NA OSJNBa0044M19.10 protein (Os04g0386700 protein) (cDNA, clone: J065037K20, full insert sequence) Q7XLP6 Q7XLP6_ORYSJ Os04g0386700 OsJ_14561 OSJNBa0044M19.10 OSNPB_040386700 ENOG411DSXH UGT82A1 Q9LHJ2 U82A1_ARATH UDP-glycosyltransferase 82A1 (EC 2.4.1.-) ARA:AT3G22250-MONOMER; 2.4.1.- 52146 UDP-glycosyltransferase 82A1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2091628; AT3G22250 UDP-glucoronosyl and UDP-glucosyl transferase Os04g0525200 protein (cDNA clone:J023047B10, full insert sequence),Os04g0525100 protein (Fragment),Glycosyltransferase (EC 2.4.1.-) (Fragment) Q0JBL6,Q0JBL7,A0A0P0VM13 Q0JBL6_ORYSJ,Q0JBL7_ORYSJ,A0A0P0VM13_ORYSJ Os04g0525200 Os04g0525200 OSNPB_040525200,Os04g0525100 Os04g0525100 OSNPB_040525100,Os02g0634100 OSNPB_020634100 ENOG411DSXP CAD1 Q9C7N2 CAD1_ARATH MACPF domain-containing protein CAD1 (Protein CONSTITUTIVELY ACTIVATED CELL DEATH 1) (Protein CAD1) DISRUPTION PHENOTYPE: Constitutively activated HR-like cell death phenotype with endogenous accumulation of high levels of salicylic acid (SA) and constitutively activated defense phenotype against challenge with P.syringae. Dwarf plant with normal cotyledons, but dark brown- or black-colored cell death lesions on the true leaves. {ECO:0000269|PubMed:15799997}. Germinating cad1-1 mutant shows a dwarf phenotype with normal cotyledons but dark-brown- or black-colored cell death lesions on the true leaves. Leaf senescence with chlorophyll breakdown is accelerated in this mutant. This phenotype segregates as a recessive trait. Homozygous cad1 mutant cannot produce seeds indicating that normal plant development are also disturbed by the mutation. Dwarf; Necrotic lesions on leaves; Sterile; Early leaf senescence-J. Yamaguchi-2005 FUNCTION: Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity. {ECO:0000269|PubMed:15799997}. 62223 MACPF domain-containing protein CAD1 (Protein CONSTITUTIVELY ACTIVATED CELL DEATH 1) (Protein CAD1) cell death [GO:0008219]; immune response [GO:0006955]; plant-type hypersensitive response [GO:0009626]; regulation of salicylic acid metabolic process [GO:0010337] TISSUE SPECIFICITY: Mainly expressed in the vascular system. {ECO:0000269|PubMed:15799997}. locus:2013673; AT1G29690 MAC Perforin domain containing protein Os01g0748900 protein (cDNA clone:J013083J19, full insert sequence) Q94J22 Q94J22_ORYSJ Os01g0748900 Os01g0748900 OSNPB_010748900 P0481E12.33 ENOG411DYY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50S ribosomal protein L10 Os05g0121500 protein (Putative 50S ribosomal protein L10) (cDNA, clone: J090046D18, full insert sequence) Q60F44 Q60F44_ORYSJ Os05g0121500 Os05g0121500 OJ1001_G01.8 OsJ_16936 OSNPB_050121500 ENOG411DYY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DYY4 Q500X2,A0A1P8BG49 Q500X2_ARATH,A0A1P8BG49_ARATH At5g04440 (RAP release 2, galactose-binding-like domain protein, putative (DUF1997)),RAP release 2, galactose-binding-like domain protein, putative (DUF1997) 28156,26841 At5g04440 (RAP release 2, galactose-binding-like domain protein, putative (DUF1997)),RAP release 2, galactose-binding-like domain protein, putative (DUF1997) chloroplast [GO:0009507] locus:2184377; AT5G04440 Protein of unknown function (DUF1997) (RAP Annotation release2) Galactose-binding like domain containing protein ((Rice Genome Annotation Project) expressed protein) (Expressed protein) (Os03g0146500 protein),Os03g0146500 protein Q10RT4,A0A0P0VT13 Q10RT4_ORYSJ,A0A0P0VT13_ORYSJ Os03g0146500 LOC_Os03g05320 Os03g0146500 OsJ_09402 OSJNBa0067N01.13 OSNPB_030146500,Os03g0146500 OSNPB_030146500 ENOG411DYYA NAF1 Q9LR70,Q9ZQZ7,Q9LR71,A0A1P8B7U8,A8MQE8 Q9LR70_ARATH,Q9ZQZ7_ARATH,Q9LR71_ARATH,A0A1P8B7U8_ARATH,A8MQE8_ARATH F21B7.15 (Nuclear assembly factor 1),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Putative glycosylation enzyme),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (F21B7.14) (Glycosyltransferase) (Putative glycosylation enzyme),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 88838,51667,51504,49144,41067 F21B7.15 (Nuclear assembly factor 1),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Putative glycosylation enzyme),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (F21B7.14) (Glycosyltransferase) (Putative glycosylation enzyme),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein plasmodesma [GO:0009506]; pseudouridine synthesis [GO:0001522]; ribosome biogenesis [GO:0042254],integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375],membrane [GO:0016020]; acetylglucosaminyltransferase activity [GO:0008375] locus:2020713;,locus:2125502;,locus:2020748; AT1G03530,AT4G03340,AT1G03520 glycosyltransferase family 14 protein N-acetylglucosaminyltransferase-like protein (Os08g0143500 protein) (cDNA clone:J023081E17, full insert sequence),Os08g0143500 protein (Fragment) Q6YYY9,A0A0N7KP96 Q6YYY9_ORYSJ,A0A0N7KP96_ORYSJ P0473D02.40-1 P0025F03.18-1 Os08g0143500 OSNPB_080143500,Os08g0143500 OSNPB_080143500 ENOG411DYYF Q9FN34 Q9FN34_ARATH Ribosomal protein L11 methyltransferase-like protein ARA:GQT-2685-MONOMER; 40366 Ribosomal protein L11 methyltransferase-like protein ribosome [GO:0005840]; protein methyltransferase activity [GO:0008276] locus:2154739; AT5G53920 ribosomal protein L11 Os05g0497675 protein C7J2D7 C7J2D7_ORYSJ Os05g0497675 Os05g0497675 OSNPB_050497675 ENOG411DYYH Q8VZE4 PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570 89934 Pentatricopeptide repeat-containing protein At4g01570 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2133352; AT4G01570 Pentatricopeptide repeat-containing protein Os03g0712900 protein (Fragment) A0A0P0W276 A0A0P0W276_ORYSJ Os03g0712900 OSNPB_030712900 ENOG411EDGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYWP GAUT15 Q8L4B0,A0A1I9LQY8 GAUTF_ARATH,A0A1I9LQY8_ARATH Probable galacturonosyltransferase 15 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: No changes in the cell wall content. {ECO:0000269|PubMed:19825675}. FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis.,PATHWAY: Glycan metabolism; pectin biosynthesis. {ECO:0000256|RuleBase:RU362027}. 2.4.1.- 60620,46630 Probable galacturonosyltransferase 15 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489],Golgi membrane [GO:0000139]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:2099049; AT3G58790 Galacturonosyltransferase NA NA NA NA NA NA NA ENOG411E79V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family Os01g0844200 protein Q5N9W1 Q5N9W1_ORYSJ Os01g0844200 OSNPB_010844200 P0406G08.33 ENOG411E79T F4K1D8 F4K1D8_ARATH Nuclease HARBI1-like protein 24510 Nuclease HARBI1-like protein integral component of membrane [GO:0016021] locus:504954841; AT5G35695 Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411E79D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CobW/HypB/UreG nucleotide-binding domain NA NA NA NA NA NA NA ENOG411E79C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain of PTEN tumour-suppressor protein NA NA NA NA NA NA NA ENOG411E799 LEA6 Q39138 LEA6_ARATH Late embryogenesis abundant protein 6 (Late embryogenesis abundant protein 4-1) (AtLEA4-1) FUNCTION: Involved dehydration tolerance. Involved in the adaptive response of vascular plants to withstand water deficit (PubMed:20668063). May possess chaperone-like activity under water deficit (By similarity). {ECO:0000250|UniProtKB:Q96273, ECO:0000269|PubMed:20668063}. 14891 Late embryogenesis abundant protein 6 (Late embryogenesis abundant protein 4-1) (AtLEA4-1) cytosol [GO:0005829]; plasmodesma [GO:0009506]; embryo development ending in seed dormancy [GO:0009793]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414]; seed development [GO:0048316] DEVELOPMENTAL STAGE: Expressed during embryo development and in dry seed. Expression decreases significantly after seed germination. {ECO:0000269|PubMed:20668063}. locus:2206629; AT1G32560 late embryogenesis abundant group 1 domain-containing protein LEA group 1 domain-containing protein NA NA NA NA NA NA NA ENOG411E70J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E70K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411E70B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) Os01g0132500 protein A0A0P0UXP0 A0A0P0UXP0_ORYSJ Os01g0132500 OSNPB_010132500 ENOG411E70E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0064G10.17 protein (Os04g0677600 protein) Q7XKB4 Q7XKB4_ORYSJ Os04g0677600 Os04g0677600 OSJNBa0064G10.17 OSNPB_040677600 ENOG411E70Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein NA NA NA NA NA NA NA ENOG411E707 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0821550 protein,Os03g0821400 protein Q84TB1,A0A0N7KIA8 Q84TB1_ORYSJ,A0A0N7KIA8_ORYSJ OJ1754_E06.31 Os03g0821550 OsJ_13152 OSNPB_030821550,Os03g0821400 OSNPB_030821400 ENOG411DQH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0728500 protein (cDNA clone:J013118C12, full insert sequence) (cDNA clone:J033068A13, full insert sequence) Q5Z7N2 Q5Z7N2_ORYSJ Os06g0728500 Os06g0728500 OsJ_22731 OSNPB_060728500 P0017G10.33 ENOG411DQH7 Q8LDU1,Q93WM0 Q8LDU1_ARATH,Q93WM0_ARATH AT3G03890 protein (FMN binding protein),AT3g03890/F20H23_6 (FMN binding protein) 35052,33310 AT3G03890 protein (FMN binding protein),AT3g03890/F20H23_6 (FMN binding protein) chloroplast [GO:0009507]; cofactor binding [GO:0048037],cofactor binding [GO:0048037] locus:2079394; AT3G03890 Protein of unknown function (DUF2470) Os07g0573800 protein (Putative root border cell-specific protein) (cDNA clone:006-210-B07, full insert sequence) (cDNA clone:J023134F17, full insert sequence),Os07g0573800 protein (Fragment) Q6ZL16,A0A0P0X7V0 Q6ZL16_ORYSJ,A0A0P0X7V0_ORYSJ OJ1699_E05.22-1 OJ1562_B11.101-1 Os07g0573800 OsJ_24830 OSNPB_070573800,Os07g0573800 OSNPB_070573800 ENOG411DQH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0540600 protein (cDNA clone:J023031I01, full insert sequence) (cDNA clone:J023031J01, full insert sequence),Os05g0541600 protein,Os05g0540500 protein,Os05g0536800 protein (Fragment) Q5TKQ3,B9FHD4,B9FHD1,A0A0P0WQF6 Q5TKQ3_ORYSJ,B9FHD4_ORYSJ,B9FHD1_ORYSJ,A0A0P0WQF6_ORYSJ Os05g0540600 OJ1362_G11.5 OSNPB_050540600,Os05g0541600 OsJ_19394 OSNPB_050541600,Os05g0540500 OsJ_19385 OSNPB_050540500,Os05g0536800 OSNPB_050536800 ENOG411E92J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os06g0682600 protein Q653W6 Q653W6_ORYSJ Os06g0682600 OsJ_22390 OSNPB_060682600 P0547F09.30 ENOG411ED7W Q1G3I7,Q1G391 FB232_ARATH,FB217_ARATH F-box protein At4g12382,F-box protein At4g00893 16088,45462 F-box protein At4g12382,F-box protein At4g00893 locus:4515103379;,locus:4010713853; AT4G12382,AT4G00893 NA NA NA NA NA NA NA NA ENOG411DURC NUP214 F4I1T7 NP214_ARATH Nuclear pore complex protein NUP214 (Nucleoporin 214) (Protein EMBRYO DEFECTIVE 1011) (Protein LNO1) (Protein LONO1) DISRUPTION PHENOTYPE: Lethal when homozygous. Knockdown alleles have no obvious defect in growth and development. {ECO:0000269|PubMed:22898497}. FUNCTION: Required for normal embryogenesis and seed viability. Involved in the first asymmetrical cell division of the zygote. Regulates the number and planes of cell divisions required for generating the normal embryo proper and suspensor, apical-basal axis, cotyledons and meristem. {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22898497}. MISCELLANEOUS: Named LONO after an Hawaiian god associated with fertility, agriculture, rainfall and music. {ECO:0000305|PubMed:22898497}. 192930 Nuclear pore complex protein NUP214 (Nucleoporin 214) (Protein EMBRYO DEFECTIVE 1011) (Protein LNO1) (Protein LONO1) mitochondrion [GO:0005739]; nuclear pore central transport channel [GO:0044613]; nuclear pore nuclear basket [GO:0044615]; nuclear localization sequence binding [GO:0008139]; nucleocytoplasmic transporter activity [GO:0005487]; structural constituent of nuclear pore [GO:0017056]; embryo development ending in seed dormancy [GO:0009793]; mRNA transport [GO:0051028]; protein import into nucleus [GO:0006606]; RNA export from nucleus [GO:0006405]; zygote asymmetric cell division [GO:0010070] TISSUE SPECIFICITY: Highly expressed in reproductive tissues, such as flowers and early developing seeds. Detected at low levels in vegetative tissues, such as leaves, shoots, stems or roots. Expressed in anthers, stigma papilla, embryo and endosperm. {ECO:0000269|PubMed:22898497}. locus:2193849; AT1G55540 NA Os07g0685400 protein (Fragment) A0A0P0XAR8 A0A0P0XAR8_ORYSJ Os07g0685400 OSNPB_070685400 ENOG411DURB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3119) Os05g0401200 protein A0A0P0WMB8 A0A0P0WMB8_ORYSJ Os05g0401200 OSNPB_050401200 ENOG411DURF Q1H5B2 Q1H5B2_ARATH At3g07890 (Putative GTPase activator protein) (Ypt/Rab-GAP domain of gyp1p superfamily protein) 45323 At3g07890 (Putative GTPase activator protein) (Ypt/Rab-GAP domain of gyp1p superfamily protein) endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2077472; AT3G07890 RabGAP TBC domain-containing protein GTPase activator protein-like (Os08g0337700 protein) Q6Z973 Q6Z973_ORYSJ Os08g0337700 OSNPB_080337700 P0683E12.31 P0702G08.2 ENOG411DURD LOJ O80958,Q9SV46 PP194_ARATH,PP282_ARATH Pentatricopeptide repeat-containing protein At2g39230, mitochondrial (Protein LATERAL ORGAN JUNCTION),Pentatricopeptide repeat-containing protein At3g54980, mitochondrial FUNCTION: Involved in lateral organ development and boundary demarcation. 97669,95060 Pentatricopeptide repeat-containing protein At2g39230, mitochondrial (Protein LATERAL ORGAN JUNCTION),Pentatricopeptide repeat-containing protein At3g54980, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] TISSUE SPECIFICITY: Expressed in lateral organ junctions and shoot apical meristem (SAM). locus:2056078;,locus:2082727; AT2G39230,AT3G54980 Pentatricopeptide repeat-containing protein Fertility restorer homologue-like (Os01g0611900 protein) (cDNA clone:J013158F03, full insert sequence) Q8LQY2 Q8LQY2_ORYSJ Os01g0611900 Os01g0611900 OsJ_02580 OSNPB_010611900 P0046B10.15 ENOG411DURK Q8L7W4,O82174 Q8L7W4_ARATH,O82174_ARATH AT4g17080/dl4570w (Histone H3 K4-specific methyltransferase SET7/9 family protein),At2g35170/T4C15.16 (Expressed protein) (Histone H3 K4-specific methyltransferase SET7/9 family protein) ARA:GQT-2520-MONOMER;,ARA:GQT-1214-MONOMER; 57706,54778 AT4g17080/dl4570w (Histone H3 K4-specific methyltransferase SET7/9 family protein),At2g35170/T4C15.16 (Expressed protein) (Histone H3 K4-specific methyltransferase SET7/9 family protein) integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2130489;,locus:2063489; AT4G17080,AT2G35170 MORN Os10g0565000 protein A0A0P0XXX7 A0A0P0XXX7_ORYSJ Os10g0565000 OSNPB_100565000 ENOG411DURH EDA2 Q1PF50,A4VCL8,Q683F9,Q94CC6 EDA2_ARATH,A4VCL8_ARATH,Q683F9_ARATH,Q94CC6_ARATH Probable serine protease EDA2 (EC 3.4.-.-) (Protein EMBRYO SAC DEVELOPMENT ARREST 2),At4g36190 (Serine carboxypeptidase S28 family protein),Prolyl carboxypeptidase like protein (Serine carboxypeptidase S28 family protein),Prolyl carboxypeptidase like protein (Serine carboxypeptidase S28 family protein) (Uncharacterized protein At4g36195) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19748917}. FUNCTION: May be involved in a proteolytic pathway controlling the nuclear division phase of megagametogenesis. {ECO:0000269|PubMed:15634699}. 3.4.-.- 55807,54210,53712,54774 Probable serine protease EDA2 (EC 3.4.-.-) (Protein EMBRYO SAC DEVELOPMENT ARREST 2),At4g36190 (Serine carboxypeptidase S28 family protein),Prolyl carboxypeptidase like protein (Serine carboxypeptidase S28 family protein),Prolyl carboxypeptidase like protein (Serine carboxypeptidase S28 family protein) (Uncharacterized protein At4g36195) extracellular region [GO:0005576]; dipeptidyl-peptidase activity [GO:0008239]; serine-type peptidase activity [GO:0008236]; megagametogenesis [GO:0009561]; proteolysis [GO:0006508],vacuole [GO:0005773]; carboxypeptidase activity [GO:0004180]; dipeptidyl-peptidase activity [GO:0008239]; serine-type peptidase activity [GO:0008236]; proteolysis [GO:0006508],carboxypeptidase activity [GO:0004180]; serine-type peptidase activity [GO:0008236],plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; carboxypeptidase activity [GO:0004180]; dipeptidyl-peptidase activity [GO:0008239]; serine-type peptidase activity [GO:0008236]; proteolysis [GO:0006508] locus:2060959;,locus:2122249;,locus:505006564; AT2G18080,AT4G36190,AT4G36195 serine carboxypeptidase S28 family protein Os10g0511600 protein (Prolyl carboxypeptidase like protein, putative, expressed) (cDNA clone:J033022B10, full insert sequence),Os10g0511400 protein (Prolyl carboxypeptidase like protein, putative, expressed) (cDNA clone:J023054G22, full insert sequence) Q337C4,Q7XCY0 Q337C4_ORYSJ,Q7XCY0_ORYSJ Os10g0511600 LOC_Os10g36780 OSNPB_100511600,LOC_Os10g36760 Os10g0511400 OSNPB_100511400 ENOG411DURN CYP71 Q8W4D0 CPY71_ARATH Peptidyl-prolyl cis-trans isomerase CYP71 (PPIase CYP71) (EC 5.2.1.8) (Cyclophilin of 71 kDa) (Cyclophilin-71) DISRUPTION PHENOTYPE: Bushy and stunted stature. {ECO:0000269|PubMed:17704213}. FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Histone remodeling factor involved in chromatin-based gene silencing. Reinforces H3K27 methylation. Involved in fundamental processes of chromatin assembly and histone modification by mediating the targeting of FAS1 and LHP1 on the chromatin. Required for the formation and development of leaves, for normal phyllotaxy and for the formation, maintenance and activity of root and shoot apical meristems. {ECO:0000269|PubMed:17704213, ECO:0000269|PubMed:21596687}. R-ATH-72163; 5.2.1.8 70984 Peptidyl-prolyl cis-trans isomerase CYP71 (PPIase CYP71) (EC 5.2.1.8) (Cyclophilin of 71 kDa) (Cyclophilin-71) nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; carpel development [GO:0048440]; leaf formation [GO:0010338]; leaf shaping [GO:0010358]; leaf vascular tissue pattern formation [GO:0010305]; meristem structural organization [GO:0009933]; protein folding [GO:0006457]; regulation of flower development [GO:0009909]; regulation of histone methylation [GO:0031060]; regulation of root meristem growth [GO:0010082]; sepal formation [GO:0048453]; stamen development [GO:0048443] TISSUE SPECIFICITY: Ubiquitous. Expressed in the meristems. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864, ECO:0000269|PubMed:17704213}. locus:2076003; AT3G44600 peptidylprolyl isomerase domain and WD repeat-containing protein Os08g0557500 protein (Putative cyclophilin (70.8 kD) (Cyp-15)),Os08g0557500 protein (Fragment) Q6ZJ10,A0A0P0XJ38 Q6ZJ10_ORYSJ,A0A0P0XJ38_ORYSJ OJ1150_A11.24-1 Os08g0557500 OSNPB_080557500,Os08g0557500 OSNPB_080557500 ENOG411DURQ HAG3 Q93ZR1 ELP3_ARATH Elongator complex protein 3 (AtELP3) (EC 2.3.1.48) (Elongator component 3) (Protein ELONGATA 3) (Protein ENHANCER-OF-ASYMMETRIC-LEAVES-TWO1) DISRUPTION PHENOTYPE: Slow growing rate associated with pale-green and downwardly curled narrow leaves and reduced root growth that results from a decreased cell division rate and a reduced apical dominance. Defect in tRNA wobble uridine modification. Filamentous leaves with abaxialized epidermis in AS2 defective plants. {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:20080602, ECO:0000269|PubMed:20398216, ECO:0000269|PubMed:21700721}. Very low germination rate; Delayed seedling growth; Narrow leaves; Short primary root; Short inflorescence stems with abnormal architecture -- -M. Van Lijsebettens-2005 FUNCTION: Histone acetyltransferase component of the large multiprotein complex Elongator that is involved in the regulation of transcription initiation and elongation (PubMed:20080602). May also have a methyltransferase activity (PubMed:20080602). Promotes organs development by modulating cell division rate (PubMed:20080602). Required for auxin distribution or signaling (PubMed:20080602). Required for meristem cell cycle activation at the time of germination (PubMed:23969312). Probably required for DNA replication-coupled histone acetylation (PubMed:22026817). Involved in tRNA wobble uridine modification (PubMed:20398216). Mediates the establishment of leaf polarity independently of AS2 and the ta-siRNA-related pathway (PubMed:21700721). Potential a-tubulin acetyltransferase (PubMed:22404109). Negatively regulates the expression of genes that participate in UV-B responses, such as DNA repair enzymes and enzymes that participate in sunscreen pigment biosynthesis (PubMed:25907565). {ECO:0000269|PubMed:20080602, ECO:0000269|PubMed:20398216, ECO:0000269|PubMed:21700721, ECO:0000269|PubMed:22026817, ECO:0000269|PubMed:23969312, ECO:0000269|PubMed:25907565, ECO:0000303|PubMed:22404109}. 2.3.1.48; 2.3.1.48 63694 Elongator complex protein 3 (AtELP3) (EC 2.3.1.48) (Elongator component 3) (Protein ELONGATA 3) (Protein ENHANCER-OF-ASYMMETRIC-LEAVES-TWO1) cytosol [GO:0005829]; Elongator holoenzyme complex [GO:0033588]; nuclear euchromatin [GO:0005719]; nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; auxin-activated signaling pathway [GO:0009734]; cell proliferation [GO:0008283]; DNA mediated transformation [GO:0009294]; organ growth [GO:0035265]; regulation of auxin mediated signaling pathway [GO:0010928]; regulation of leaf formation [GO:2000025]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; specification of plant organ axis polarity [GO:0090708]; transcription, DNA-templated [GO:0006351]; tRNA wobble uridine modification [GO:0002098] TISSUE SPECIFICITY: Expressed in meristematic tissues of in roots, leaves, seedlings, cotyledons, floral buds and shoot apices (PubMed:15894610, PubMed:20080602, PubMed:23969312). Expressed in the shoot meristem and the emerging leaves immediately after germination (PubMed:23969312). In the root, expressed in the transition zone and the upper meristematic zone (PubMed:23969312). {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:20080602, ECO:0000269|PubMed:23969312}. locus:2177477; AT5G50320 elongator complex protein Elongator complex protein 3 (EC 2.3.1.48) (Elongator component 3) Q7X7L3 ELP3_ORYSJ ELP3 Os04g0484900 LOC_Os04g40840 OJ000223_09.4 OSJNBa0081L15.14 FUNCTION: Histone acetyltransferase. Part of the large multiprotein complex Elongator that is involved in the regulation of transcription initiation and elongation. May also have a methyltransferase activity (By similarity). {ECO:0000250}. ENOG411DURP A0A1P8AYR9,Q8GZ36,A0A1P8AYS9,A0A1P8AYV8,A0A1P8AYT1,A0A1P8AYV9,A0A1P8AYQ2,A0A1P8AYP8,F4IQD5,F4IQD4 A0A1P8AYR9_ARATH,Q8GZ36_ARATH,A0A1P8AYS9_ARATH,A0A1P8AYV8_ARATH,A0A1P8AYT1_ARATH,A0A1P8AYV9_ARATH,A0A1P8AYQ2_ARATH,A0A1P8AYP8_ARATH,F4IQD5_ARATH,F4IQD4_ARATH YacP-like NYN domain protein,At2g02410 (Uncharacterized protein At2g02410/T16F16.20) (YacP-like NYN domain protein) 26782,34540,25139,29581,37674,29915,21867,24666,27429,29626 YacP-like NYN domain protein,At2g02410 (Uncharacterized protein At2g02410/T16F16.20) (YacP-like NYN domain protein) locus:2056206; AT2G02410 RNA-binding protein containing a PIN domain Os03g0843200 protein (Fragment) Q0DLW3 Q0DLW3_ORYSJ Os03g0843200 OSNPB_030843200 ENOG411DURW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411DURV RNP1 Q8W034,O22791 RNP1_ARATH,O22791_ARATH Heterogeneous nuclear ribonucleoprotein 1 (hnRNP1),Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein) FUNCTION: Involved with pre-mRNA processing. Forms complexes (ribonucleosomes) with at least 20 other different hnRNP and heterogeneous nuclear RNA in the nucleus (By similarity). {ECO:0000250}.; FUNCTION: Involved in the packaging of pre-mRNA into hnRNP particles, transport of poly(A) mRNA from the nucleus to the cytoplasm and may modulate splice site selection. {ECO:0000250}. 42353,41329 Heterogeneous nuclear ribonucleoprotein 1 (hnRNP1),Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein) cytosol [GO:0005829]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; regulation of response to salt stress [GO:1901000]; regulation of response to water deprivation [GO:2000070]; RNA splicing [GO:0008380]; vegetative to reproductive phase transition of meristem [GO:0010228],mRNA binding [GO:0003729] locus:2129590;,locus:2050992; AT4G14300,AT2G33410 heterogeneous nuclear ribonucleoprotein Os10g0470900 protein (Putative RNA binding protein) (RNA recognition motif family protein, expressed),Os10g0470900 protein (Fragment) Q7XDI5,A0A0P0XVW5 Q7XDI5_ORYSJ,A0A0P0XVW5_ORYSJ LOC_Os10g33230 Os10g0470900 OSJNBa0079L16.15 OSNPB_100470900,Os10g0470900 OSNPB_100470900 ENOG411DUR3 SNRNP59 Q8VYD3,A0A1P8B0Q9,A0A1P8B0V2 U1159_ARATH,A0A1P8B0Q9_ARATH,A0A1P8B0V2_ARATH U11/U12 small nuclear ribonucleoprotein 59 kDa protein (U11/U12 snRNP 59 kDa protein) (U11/U12-59K),U11/U12 small nuclear ribonucleoprotein 44031,39581,40748 U11/U12 small nuclear ribonucleoprotein 59 kDa protein (U11/U12 snRNP 59 kDa protein) (U11/U12-59K),U11/U12 small nuclear ribonucleoprotein spliceosomal complex [GO:0005681]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013] locus:2062944; AT2G46200 NA Os01g0226500 protein,Os01g0226500 protein (Fragment) Q5NAF5,A0A0N7KCL1 Q5NAF5_ORYSJ,A0A0N7KCL1_ORYSJ P0492F05.33-1 P0443E07.24-1 Os01g0226500 OSNPB_010226500,Os01g0226500 OSNPB_010226500 ENOG411DUR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0391100 protein A0A0P0VZ59 A0A0P0VZ59_ORYSJ Os03g0391100 OSNPB_030391100 ENOG411DUR0 Q9MAU4,O64509,A8MRN9 Q9MAU4_ARATH,O64509_ARATH,A8MRN9_ARATH F13M7.5 protein (Golgin family A protein (DUF1664)) (Uncharacterized protein At1g04960) (Uncharacterized protein At1g04960; F13M7.5),At2g02730 (Expressed protein) (GRIP/coiled-coil protein, putative (DUF1664)) (Uncharacterized protein At2g02730/T20F6.13),Golgin family A protein (DUF1664) 34358,30062,36754 F13M7.5 protein (Golgin family A protein (DUF1664)) (Uncharacterized protein At1g04960) (Uncharacterized protein At1g04960; F13M7.5),At2g02730 (Expressed protein) (GRIP/coiled-coil protein, putative (DUF1664)) (Uncharacterized protein At2g02730/T20F6.13),Golgin family A protein (DUF1664) locus:2058832;,locus:2010602; AT1G04960,AT2G02730 Protein of unknown function (DUF1664) Os09g0482740 protein (cDNA clone:001-040-F09, full insert sequence) B7E6Z9 B7E6Z9_ORYSJ Os09g0482740 Os09g0482740 OsJ_29795 OSNPB_090482740 ENOG411DUR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 Beta-glucosidase 38 (Os12bglu38) (EC 3.2.1.21) Q2QSR8 BGL38_ORYSJ BGLU38 Os12g0420100 LOC_Os12g23170 OsJ_35886 ENOG411DUR6 FAMA,FMA Q56YJ8,A0A1I9LN81 FAMA_ARATH,A0A1I9LN81_ARATH Transcription factor FAMA (Basic helix-loop-helix protein 97) (AtbHLH97) (bHLH 97) (Transcription factor EN 14) (bHLH transcription factor bHLH097),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein DISRUPTION PHENOTYPE: Excess symmetric divisions during stomata development leading to abnormal guard cells clusters formation. Reduced seeds set and low biomass. These phenotypes are complemented by MYB124. {ECO:0000269|PubMed:24571519}. Complete lack of recognizable stomata. Clusters of small narrow epidermal cells occur in the normal location of stomata. Mutants arrest as pale plants with small rosette leaves and bushy inflorescences topped by one to three sterile flowers.,Failure of stomatal guard mother cells to differentiate into guard cells. The epidermis of homozygous mutant contains small tumors of cells with intermediate stomatal lineage identity. Plants die as pale small seedlings. Pale green; Dwarf; Small rosette leaves; Increased branching; Sterile; Absence of stomata-D. Bergmann-2006 FUNCTION: Transcription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}. MISCELLANEOUS: Plants overexpressing FAMA exhibit ectopic stomata. 46408,45248 Transcription factor FAMA (Basic helix-loop-helix protein 97) (AtbHLH97) (bHLH 97) (Transcription factor EN 14) (bHLH transcription factor bHLH097),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; guard cell differentiation [GO:0010052]; guard cell fate commitment [GO:0010377]; guard mother cell differentiation [GO:0010444]; negative regulation of cell division [GO:0051782]; negative regulation of histone H3-K27 methylation [GO:0061086]; positive regulation of cell differentiation [GO:0045597]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] DEVELOPMENTAL STAGE: Not expressed in meristemoids, but strongly expressed in guard mother cells (GMCs) and in young guard cells (at protein level) (PubMed:17088607). Expressed at the transition to terminal stomatal differentiation, just before and after the symmetric division of stomatal differentiation, being confined to late-stage GMC and to young, still differentiating guard cells (PubMed:24571519). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:24571519}. TISSUE SPECIFICITY: Resctricted to stomatal cell lineages (at protein level). Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}. locus:2093746; AT3G24140 Transcription factor Os05g0586300 protein A0A0P0WRG0 A0A0P0WRG0_ORYSJ Os05g0586300 OSNPB_050586300 ENOG411DUR5 Q949P3,Q8W4Q1,B9DH75,A0A1P8B493,A0A1P8AXW1 Y2734_ARATH,Q8W4Q1_ARATH,B9DH75_ARATH,A0A1P8B493_ARATH,A0A1P8AXW1_ARATH Uncharacterized protein At2g17340,At4g35360/F23E12_80 (Pantothenate kinase),AT2G17320 protein (Pantothenate kinase),Pantothenate kinase 40858,41001,40072,30114,38489 Uncharacterized protein At2g17340,At4g35360/F23E12_80 (Pantothenate kinase),AT2G17320 protein (Pantothenate kinase),Pantothenate kinase kinase activity [GO:0016301] locus:2827544;,locus:2122123;,locus:2827582; AT2G17340,AT4G35360,AT2G17320 Protein of unknown function DUF89 Os06g0325500 protein (Pantothenate kinase-like) (cDNA clone:001-124-B09, full insert sequence) (cDNA clone:J023134A07, full insert sequence) Q69T90 Q69T90_ORYSJ Os06g0325500 Os06g0325500 OsJ_21173 OSNPB_060325500 P0421H01.40 P0652D10.10 ENOG411DUR4 Q9ZVI2 Q9ZVI2_ARATH HAD superfamily, subfamily IIIB acid phosphatase (Putative acid phosphatase) ARA:AT2G38600-MONOMER; 29275 HAD superfamily, subfamily IIIB acid phosphatase (Putative acid phosphatase) acid phosphatase activity [GO:0003993] locus:2064128; AT2G38600 acid phosphatase Os07g0681200 protein (Putative syringolide-induced protein) (cDNA clone:002-120-E04, full insert sequence),Os03g0332533 protein (Fragment) Q7XHW6,A0A0P0VXV6 Q7XHW6_ORYSJ,A0A0P0VXV6_ORYSJ Os07g0681200 Os07g0681200 OSJNBa0008J01.21 OSNPB_070681200,Os03g0332533 OSNPB_030332533 ENOG411DUR9 SPT16,GTC2 O82491,A0A1P8B6H4,F4JME7 SPT16_ARATH,A0A1P8B6H4_ARATH,F4JME7_ARATH FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16),Global transcription factor C,GTC2 Reduced leaf size. Leaf shape resembles that of spt16-1 single mutant. Earlier flowering than either single mutant.,Reduced leaf size due to fewer cells but increase in total leaf number especially under short days. Reduced stature and decreased apical dominance. Reduced fertility/seed set.Early flowering. Increased branching and leaf number; Early flowering; Abnormal flower and leaf morphology; Reduced fertility-K. Grasser-2009 FUNCTION: Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II (Probable). {ECO:0000305|PubMed:15546350}. R-ATH-674695;R-ATH-6796648;R-ATH-6804756; 120586,86957,39439 FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16),Global transcription factor C,GTC2 FACT complex [GO:0035101]; nuclear euchromatin [GO:0005719]; nucleolus [GO:0005730]; nucleus [GO:0005634]; histone binding [GO:0042393]; nucleosome binding [GO:0031491]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; DNA replication-independent nucleosome organization [GO:0034724]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription elongation from RNA polymerase II promoter [GO:0006368]; vegetative to reproductive phase transition of meristem [GO:0010228],FACT complex [GO:0035101]; histone binding [GO:0042393]; nucleosome binding [GO:0031491]; DNA replication-independent nucleosome organization [GO:0034724]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription elongation from RNA polymerase II promoter [GO:0006368] TISSUE SPECIFICITY: Widely expressed. Present in embryos, shoots and roots, whereas it is not present in terminally differentiated cells such as mature trichoblasts or cells of the root cap (at protein level). {ECO:0000269|PubMed:15546350}. locus:2132756;,locus:2139217; AT4G10710,AT4G10670 Component of the FACT complex a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16),Os08g0404350 protein Q7X923,A0A0P0XGE1 SPT16_ORYSJ,A0A0P0XGE1_ORYSJ SPT16 Os04g0321600 LOC_Os04g25550 OSJNBb0062H02.2,Os08g0404350 OSNPB_080404350 FUNCTION: Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. SSRP1 binds specifically to double-stranded DNA (By similarity). {ECO:0000250}. ENOG411DUR8 SSL13 Q9M1B4 SSL13_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 13 (AtSSL13) (Protein LESS ADHERENT POLLEN 3) (Strictosidine synthase 11) (AtSS11) DISRUPTION PHENOTYPE: Abnormal stigma binding and male sterility. Abnormal pollen exine which is thinner, weaker, and missing some connections between their roof-like tectum structures. Content modification of a broad range of metabolic compounds, such as nonacosane and naringenin chalcone. {ECO:0000269|PubMed:20033437}. FUNCTION: Required for the exine formation during pollen development. {ECO:0000269|PubMed:20033437}. ARA:AT3G59530-MONOMER; 45629 Protein STRICTOSIDINE SYNTHASE-LIKE 13 (AtSSL13) (Protein LESS ADHERENT POLLEN 3) (Strictosidine synthase 11) (AtSS11) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058]; pollen development [GO:0009555]; pollen exine formation [GO:0010584] locus:2097488; AT3G59530 adipocyte plasma membrane-associated protein-like Os03g0263600 protein (Putative male fertility protein [Zea mays]) (Strictosidine synthase family protein, expressed) (cDNA clone:J023091D01, full insert sequence) Q84Q89 Q84Q89_ORYSJ LOC_Os03g15710 Os03g0263600 OJ1041F02.16 OSNPB_030263600 ENOG411EHJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EHJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EHJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase Mutator family NA NA NA NA NA NA NA ENOG411EHJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJU Q681J0,A0A1P8BCM6 Q681J0_ARATH,A0A1P8BCM6_ARATH At5g54095 (Proteoglycan-like protein) (Uncharacterized protein At5g54095),Proteoglycan-like protein 14232,13436 At5g54095 (Proteoglycan-like protein) (Uncharacterized protein At5g54095),Proteoglycan-like protein locus:505006691; AT5G54095 NA NA NA NA NA NA NA NA ENOG411EHJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AT5G05470 (E 1e-007) EIF2 ALPHA ATEIF2-A2 EIF2-A2 EIF2 ALPHA NA NA NA NA NA NA NA ENOG411EHJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0268800 protein A0A0P0XJ87 A0A0P0XJ87_ORYSJ Os09g0268800 OSNPB_090268800 ENOG411EHJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0300100 protein Q0DSM0 Q0DSM0_ORYSJ Os03g0300100 Os03g0300100 OsJ_27596 OSNPB_030300100 ENOG411EHJG Q9FHA1 Q9FHA1_ARATH RING/U-box superfamily protein 31542 RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2155513; AT5G67120 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EHJF EPFL7 C4B8C5,A0A1P8AU73 EPFL7_ARATH,A0A1P8AU73_ARATH EPIDERMAL PATTERNING FACTOR-like protein 7 (EPF-like protein 7) [Cleaved into: MEPFL7],EPIDERMAL PATTERNING FACTOR-like protein FUNCTION: Controls stomatal patterning. {ECO:0000250}. 19322,15202 EPIDERMAL PATTERNING FACTOR-like protein 7 (EPF-like protein 7) [Cleaved into: MEPFL7],EPIDERMAL PATTERNING FACTOR-like protein extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; stomatal complex development [GO:0010374],integral component of membrane [GO:0016021] locus:6530298168; AT1G71866 NA NA NA NA NA NA NA NA ENOG411EHJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ethylene-responsive transcription factor NA NA NA NA NA NA NA ENOG411EHJ8 Q9AST8 Q9AST8_ARATH At2g16001 (At2g16001/At2g16001) (Expressed protein) (MD-2-related lipid recognition domain-containing protein) FUNCTION: Involved in the regulation of gravitropic response and basipetal auxin transport in roots. Involved in salt stress tolerance. May facilitate membrane trafficking and asymmetric cell elongation via SYT1. Binds stigmasterol and dipalmitoyl phosphoethanolamine (DPPE) in vitro. {ECO:0000269|PubMed:27044028}. 17228 At2g16001 (At2g16001/At2g16001) (Expressed protein) (MD-2-related lipid recognition domain-containing protein) cytoplasm [GO:0005737]; phosphatidylethanolamine binding [GO:0008429]; sterol binding [GO:0032934]; intracellular sterol transport [GO:0032366]; positive gravitropism [GO:0009958]; response to salt stress [GO:0009651] locus:505006248; AT2G16005 MD-2-related lipid recognition domain-containing protein NA NA NA NA NA NA NA ENOG411EHJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EHJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kazal-type serine protease inhibitor domain NA NA NA NA NA NA NA ENOG411EHJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411EHJ7 GRP23 O48848,A0A1P8B273,F4ITU2,F4ITU0,F4ITU1 GRP23_ARATH,A0A1P8B273_ARATH,F4ITU2_ARATH,F4ITU0_ARATH,F4ITU1_ARATH Glycine-rich protein 23 (AtGRP23),Glycine-rich protein 23 16861,16034,16334,16234,14904 Glycine-rich protein 23 (AtGRP23),Glycine-rich protein 23 response to abscisic acid [GO:0009737]; response to salicylic acid [GO:0009751] locus:2046447; AT2G32690 NA NA NA NA NA NA NA NA ENOG411EHJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411EJZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411EJZK AUXI1 Q0WQ57,Q9SU08,A0A1P8B708,A0A1P8B700,A0A1P8B6Z5,F4JRF7,F4JRG0 AUXI2_ARATH,AUXI1_ARATH,A0A1P8B708_ARATH,A0A1P8B700_ARATH,A0A1P8B6Z5_ARATH,F4JRF7_ARATH,F4JRG0_ARATH Auxilin-related protein 2,Auxilin-related protein 1 (Auxilin-like protein 1),Chaperone DnaJ-domain superfamily protein FUNCTION: Promotes probably uncoating of clathrin-coated vesicles. {ECO:0000250}.,FUNCTION: Promotes uncoating of clathrin-coated vesicles. May interact directly with clathrin. {ECO:0000269|PubMed:11701884}. 98327,99853,86017,88954,96916,98159,98985 Auxilin-related protein 2,Auxilin-related protein 1 (Auxilin-like protein 1),Chaperone DnaJ-domain superfamily protein cytosol [GO:0005829]; plasma membrane [GO:0005886]; vesicle [GO:0031982]; receptor-mediated endocytosis [GO:0006898],cytoplasmic vesicle [GO:0031410]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vesicle [GO:0031982]; receptor-mediated endocytosis [GO:0006898] locus:2135763;,locus:2135778; AT4G12770,AT4G12780 DnaJ domain Expressed protein (Os12g0548200 protein),Os12g0548200 protein (Fragment) Q2QNZ9,A0A0P0YB46 Q2QNZ9_ORYSJ,A0A0P0YB46_ORYSJ LOC_Os12g36180 Os12g0548200 OSNPB_120548200,Os12g0548200 OSNPB_120548200 ENOG411E7G4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rieske [2Fe-2S] domain NA NA NA NA NA NA NA ENOG411E7G1 Q8LBK1 Q8LBK1_ARATH At5g01015 (Transmembrane protein) 11357 At5g01015 (Transmembrane protein) integral component of membrane [GO:0016021] locus:505006576; AT5G01015 NA NA NA NA NA NA NA NA ENOG411E7G3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E7G2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0673100 protein (Os03g0673400 protein),Expressed protein (Os03g0673700 protein) (cDNA clone:001-109-G01, full insert sequence) C7J044,Q10FB7 C7J044_ORYSJ,Q10FB7_ORYSJ Os03g0673100 Os03g0673400 OSNPB_030673400,Os03g0673700 LOC_Os03g47060 OSNPB_030673700 ENOG411EJZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein A0A0P0VID1 A0A0P0VID1_ORYSJ Os02g0331400 OSNPB_020331400 ENOG411E7GG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF584 domain containing protein Os01g0748300 protein A0A0P0V888 A0A0P0V888_ORYSJ Os01g0748300 OSNPB_010748300 ENOG411EJCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7GZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MORN NA NA NA NA NA NA NA ENOG411E23G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase 7-like NA NA NA NA NA NA NA ENOG411E237 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY WRKY transcription factor WRKY62 (OsWRKY62) (XA21-binding protein 10) Q6EPZ0 WRK62_ORYSJ WRKY62 XB10 Os09g0417800 OsJ_29379 OSNPB_090417800 P0014G10.42 P0701F11.1 FUNCTION: Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}. ENOG411E230 Q9MA63,A0A1I9LN84 Y3550_ARATH,A0A1I9LN84_ARATH REF/SRPP-like protein At3g05500,Rubber elongation factor protein (REF) 27194,19137 REF/SRPP-like protein At3g05500,Rubber elongation factor protein (REF) lipid droplet [GO:0005811]; vacuole [GO:0005773]; developmental vegetative growth [GO:0080186]; lipid particle organization [GO:0034389]; lipid storage [GO:0019915]; positive regulation of growth [GO:0045927]; positive regulation of response to water deprivation [GO:1902584],translation elongation factor activity [GO:0003746] locus:2079782; AT3G05500 Stress-related REF/SRPP-like protein Os05g0151300/LOC_Os05g05940,Os07g0671800 protein (Fragment) Q9FRA7,A0A0P0XAA0 Y5513_ORYSJ,A0A0P0XAA0_ORYSJ Os05g0151300 LOC_Os05g05940 OsJ_016392 OsJ_17148 OSJNBa0072C16.2 P0001A07.13,Os07g0671800 OSNPB_070671800 ENOG411EJ3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Cysteine repeat modular protein 2 NA NA NA NA NA NA NA ENOG411EJ3I EXL1 Q9C6E4 EXOL1_ARATH Protein EXORDIUM-like 1 (PHOSPHATE-INDUCED 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show diminished biomass production under low carbon and energy conditions. {ECO:0000269|PubMed:21543728}. FUNCTION: May play a role in a brassinosteroid-dependent regulatory pathway that controls growth and development under low carbon and energy availability. {ECO:0000269|PubMed:21543728}. 33186 Protein EXORDIUM-like 1 (PHOSPHATE-INDUCED 1) apoplast [GO:0048046]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; growth [GO:0040007]; response to hypoxia [GO:0001666] locus:2203314; AT1G35140 Phosphate-induced protein 1 conserved region NA NA NA NA NA NA NA ENOG411EJ3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E444 VQ9 Q9M9F0 VQ9_ARATH VQ motif-containing protein 9 (AtVQ9) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show enhanced resistance to salt stress. {ECO:0000269|PubMed:23451802}. FUNCTION: Functions as a negative regulator of salt stress response. Functions as repressor of WRKY8 transcription factor by decreasing the DNA-binding activity of WRKY8 and acts antagonistically with WRKY8 to regulate sodium and potassium homeostasis under salt stress. {ECO:0000269|PubMed:23451802}. 33577 VQ motif-containing protein 9 (AtVQ9) nucleus [GO:0005634]; cellular potassium ion homeostasis [GO:0030007]; cellular sodium ion homeostasis [GO:0006883]; negative regulation of response to salt stress [GO:1901001]; negative regulation of sequence-specific DNA binding transcription factor activity [GO:0043433] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23451802}. locus:2032045; AT1G78310 VQ motif NA NA NA NA NA NA NA ENOG411E442 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I reaction center subunit Os12g0189400 protein (Photosystem I reaction centre subunit N, chloroplast, putative, expressed) (cDNA clone:001-021-C11, full insert sequence) Q2QWN3 Q2QWN3_ORYSJ Os12g0189400 LOC_Os12g08770 Os12g0189400 OSNPB_120189400 ENOG411E449 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E44F Q9FZH6 Q9FZH6_ARATH F1O19.11 protein (Membrane-associated kinase regulator) (Uncharacterized protein At1g67050) 28699 F1O19.11 protein (Membrane-associated kinase regulator) (Uncharacterized protein At1g67050) kinase activity [GO:0016301] locus:2019733; AT1G67050 NA NA NA NA NA NA NA NA ENOG411E44E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH NA NA NA NA NA NA NA ENOG411E44D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain NA NA NA NA NA NA NA ENOG411E44C Q8RYC3 Q8RYC3_ARATH Expressed protein (Nucleic acid-binding, OB-fold-like protein) 20123 Expressed protein (Nucleic acid-binding, OB-fold-like protein) mRNA binding [GO:0003729] locus:505006287; AT2G33845 Inherit from euNOG: DNA-binding protein-related DNA-binding protein-related-like (Os01g0754100 protein) (cDNA clone:J013108H01, full insert sequence),Os05g0244600 protein (cDNA clone:J033077H09, full insert sequence),Os01g0238600 protein (cDNA clone:J033067D04, full insert sequence) Q5JML8,Q5W707,Q9FTU2 Q5JML8_ORYSJ,Q5W707_ORYSJ,Q9FTU2_ORYSJ Os01g0754100 OsJ_03490 OSNPB_010754100 P0435B05.44 P0503C12.16,Os05g0244600 OsJ_17775 OSJNBa0037H06.2 OSNPB_050244600,Os01g0238600 OsJ_01043 OSJNBa0086P08.24 OSNPB_010238600 ENOG411E9VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E44K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0213400 protein (Ring-H2 zinc finger protein-like) (cDNA clone:J013134A03, full insert sequence) Q94IZ7 Q94IZ7_ORYSJ Os01g0213400 OsJ_00862 OSJNBa0038J17.17 OSNPB_010213400 ENOG411E3AQ Q8LFJ2 Q8LFJ2_ARATH Uncharacterized protein 21370 Uncharacterized protein locus:2083393; AT3G06840 NA NA NA NA NA NA NA NA ENOG411E3AV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0452600 protein A0A0N7KND6 A0A0N7KND6_ORYSJ Os07g0452600 OSNPB_070452600 ENOG411E44T C/VIF2 O49603 CVIF2_ARATH Cell wall / vacuolar inhibitor of fructosidase 2 (AtC/VIF2) FUNCTION: Inhibits fructosidases from both cell wall (cell wall invertase CWI) and vacuoles (vacuolar invertase VI). {ECO:0000269|PubMed:14871666, ECO:0000269|PubMed:15327983}. 19634 Cell wall / vacuolar inhibitor of fructosidase 2 (AtC/VIF2) vacuole [GO:0005773]; enzyme inhibitor activity [GO:0004857]; negative regulation of catalytic activity [GO:0043086]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Mostly expressed at low levels in seedlings, stems, leaves and flowers (in all organs), and, to a lower extent, in roots and siliques. {ECO:0000269|PubMed:15327983}. locus:2174774; AT5G64620 cell wall vacuolar inhibitor of fructosidase NA NA NA NA NA NA NA ENOG411E3AY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os03g0758000 protein A0A0N7KI30 A0A0N7KI30_ORYSJ Os03g0758000 OSNPB_030758000 ENOG411E44R WRKY70 Q9LY00 WRK70_ARATH Probable WRKY transcription factor 70 (WRKY DNA-binding protein 70) SA-induced expression of WRKY70 was completely blocked in the insertion mutants. Mutants did not exhibit morphological differences from the wild-type. Enhanced JA-induced accumulation of anthocyanins. Enhanced disease susceptibility to bacterial and fungal pathogens. Enhanced susceptibility to Psm ES4326 infection. Elevated anthocyanin levels in response to jasmonic acid; Susceptible to fungal infection-E. Palva-2006 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 32936 Probable WRKY transcription factor 70 (WRKY DNA-binding protein 70) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; negative regulation of leaf senescence [GO:1900056]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of defense response [GO:0031347]; response to chitin [GO:0010200]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862]; transcription, DNA-templated [GO:0006351] locus:2102539; AT3G56400 Transcription factor NA NA NA NA NA NA NA ENOG411E3AX Q94BV2 Q94BV2_ARATH SAGA-associated factor 11 19677 SAGA-associated factor 11 nucleus [GO:0005634] locus:505006700; AT5G58575 Sgf11 (transcriptional regulation protein) SAGA-associated factor 11 Q5W6G3 Q5W6G3_ORYSJ Os05g0351500 OSJNBa0077J17.16 OSNPB_050351500 ENOG411E3AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SYNtaxin NA NA NA NA NA NA NA ENOG411E3AF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0173400 protein) (cDNA clone:001-025-A07, full insert sequence),Expressed protein (Os12g0171600 protein) (cDNA clone:002-112-H05, full insert sequence),Os03g0150700 protein Q2QX16,Q2QX28,A0A0P0VT20 Q2QX16_ORYSJ,Q2QX28_ORYSJ,A0A0P0VT20_ORYSJ LOC_Os12g07500 Os12g0173400 OsJ_35386 OSNPB_120173400,LOC_Os12g07380 Os12g0171600 OsJ_35377 OSNPB_120171600,Os03g0150700 OSNPB_030150700 ENOG411E3AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os02g0676500 protein A0A0P0VN55 A0A0P0VN55_ORYSJ Os02g0676500 OSNPB_020676500 ENOG411E3AH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0261000 protein A0A0P0VHA6 A0A0P0VHA6_ORYSJ Os02g0261000 OSNPB_020261000 ENOG411E3A2 MJJ3.11 Q9FFK5 Q9FFK5_ARATH At5g05710 (AtPH1-like protein) (Pleckstrin homology (PH) domain superfamily protein) 16730 At5g05710 (AtPH1-like protein) (Pleckstrin homology (PH) domain superfamily protein) locus:2166349; AT5G05710 Pleckstrin homology domain-containing protein Os01g0856800 protein (Pleckstrin homology (PH) domain-containing protein-like) (cDNA clone:J023130C15, full insert sequence),Os01g0856800 protein,Os05g0447000 protein Q94DF0,Q0JHL6,Q688J3 Q94DF0_ORYSJ,Q0JHL6_ORYSJ,Q688J3_ORYSJ P0683F02.4-1 OJ1402_H07.27-1 Os01g0856800 OSNPB_010856800,Os01g0856800 Os01g0856800 OSNPB_010856800,Os05g0447000 Os05g0447000 OSJNBb0012G21.4 OSNPB_050447000 ENOG411E3A7 LBD20 Q9SRV3 LBD20_ARATH LOB domain-containing protein 20 (ASYMMETRIC LEAVES 2-like protein 21) (AS2-like protein 21) 29286 LOB domain-containing protein 20 (ASYMMETRIC LEAVES 2-like protein 21) (AS2-like protein 21) jasmonic acid mediated signaling pathway [GO:0009867]; regulation of defense response to fungus [GO:1900150]; response to jasmonic acid [GO:0009753] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. locus:2079354; AT3G03760 lob domain-containing protein Lateral organ boundaries domain protein 18-like (Os01g0772100 protein) (cDNA, clone: J080302F02, full insert sequence) Q5N8Y9 Q5N8Y9_ORYSJ Os01g0772100 OSNPB_010772100 P0695H10.11 ENOG411E3A6 HIPP27 Q67ZW1,A0A1P8BG72 HIP27_ARATH,A0A1P8BG72_ARATH Heavy metal-associated isoprenylated plant protein 27 (AtHIP27) (AtHIPP27),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. Binds cadmium. May be involved in cadmium transport and play a role in cadmium detoxification. {ECO:0000250|UniProtKB:Q9C9A3}. 16651,13380 Heavy metal-associated isoprenylated plant protein 27 (AtHIP27) (AtHIPP27),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2156927; AT5G66110 Heavy-metal-associated domain Heavy metal-associated domain containing protein, expressed (Os03g0156600 protein) (Putative atfp6-like protein) (cDNA clone:001-119-G06, full insert sequence) Q8LMQ0 Q8LMQ0_ORYSJ Os03g0156600 LOC_Os03g06080 Os03g0156600 OSJNBa0011L14.11 OSNPB_030156600 ENOG411E6WY O22777 O22777_ARATH At2g33250/F25I18.1 (Expressed protein) (F25I18.1/F25I18.1) (Transmembrane protein) 34003 At2g33250/F25I18.1 (Expressed protein) (F25I18.1/F25I18.1) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2046550; AT2G33250 NA Os01g0680600 protein (cDNA clone:001-206-F07, full insert sequence) (cDNA clone:006-201-A10, full insert sequence) Q5QMA0 Q5QMA0_ORYSJ Os01g0680600 B1144G04.53 OsJ_03015 OSNPB_010680600 P0019E03.8 ENOG411E3A9 Q9FYF7 Y1736_ARATH REF/SRPP-like protein At1g67360 26425 REF/SRPP-like protein At1g67360 endoplasmic reticulum [GO:0005783]; lipid droplet [GO:0005811]; vacuole [GO:0005773]; developmental vegetative growth [GO:0080186]; lipid particle organization [GO:0034389]; pollen development [GO:0009555]; positive regulation of growth [GO:0045927]; positive regulation of response to water deprivation [GO:1902584] locus:2019579; AT1G67360 REF SRPP-like protein NA NA NA NA NA NA NA ENOG411E3A8 RPS10A,RPS10B,RPS10C Q9SW09,Q9FFS8,Q9LTF2,F4JTD3,A8MRV0 RS101_ARATH,RS102_ARATH,RS103_ARATH,F4JTD3_ARATH,A8MRV0_ARATH 40S ribosomal protein S10-1,40S ribosomal protein S10-2,40S ribosomal protein S10-3,RNA binding Plectin/S10 domain-containing protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 19447,19733,19551,16368,14353 40S ribosomal protein S10-1,40S ribosomal protein S10-2,40S ribosomal protein S10-3,RNA binding Plectin/S10 domain-containing protein cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; auxin homeostasis [GO:0010252]; axillary shoot meristem initiation [GO:0090506]; mature ribosome assembly [GO:0042256]; regulation of secondary shoot formation [GO:2000032]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255],cell wall [GO:0005618]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255] locus:2117497;,locus:2160452;,locus:2149579; AT4G25740,AT5G41520,AT5G52650 40s ribosomal protein 40S ribosomal protein S10-1,40S ribosomal protein S10-2,Os01g0962600 protein (Putative 40S ribosomal protein S10) P0DKK8,P0DKK9,Q94DM7 RS10A_ORYSJ,RS10B_ORYSJ,Q94DM7_ORYSJ RPS10-1 Os02g0549600 LOC_Os02g34460 OsJ_07087 OSJNBa0040I22.20 P0451A10.8,RPS10-2 Os04g0430100 LOC_Os04g35090 OsJ_14842 OSJNBa0042L16.19,Os01g0962600 OsJ_04856 OSNPB_010962600 P0483G10.27 ENOG411E6W9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411EBC8 RLM3,RPP5,RPP4,SNC1,dl4490c,dl4495c Q9FT77,F4JNB7,F4JNA9,O23530,A0A1P8B945,A0A1P8B928,A0A1P8B920,A0A1P8BAZ5,F4JNC4,A0A1P8B6I0,A0A1P8B927,A0A1P8B6H3,A0A1P8B6I4,A0A1P8B6A5,Q0WPW2,Q9SUK4,O23534,A0A1P8B3D0,A0A1P8B934,A0A1P8B8K1,A0A1P8B697,A0A1P8B3F3,A0A1P8B8K4,A0A1P8B6R0,A0A1P8B3F0,A0A1P8B8L1,A0A1P8B6Q6,A0A1P8BAX9,A0A1P8B6I2,A0A1P8B3E1,F4JNB9,A0A1P8B919,A0A1P8B878,A0A1P8B6A1,A0A1P8B5C3,A0A1P8B8K8,A0A1P8B3D3,A0A1P8B6H5,F4JNB2,F4KDB8,B3H733,F4JNB8,F4JNB6,F4KDB9,F4JNB0,A0A1P8B877 RLM3_ARATH,RPP5_ARATH,RPP4_ARATH,SNC1_ARATH,A0A1P8B945_ARATH,A0A1P8B928_ARATH,A0A1P8B920_ARATH,A0A1P8BAZ5_ARATH,F4JNC4_ARATH,A0A1P8B6I0_ARATH,A0A1P8B927_ARATH,A0A1P8B6H3_ARATH,A0A1P8B6I4_ARATH,A0A1P8B6A5_ARATH,Q0WPW2_ARATH,Q9SUK4_ARATH,O23534_ARATH,A0A1P8B3D0_ARATH,A0A1P8B934_ARATH,A0A1P8B8K1_ARATH,A0A1P8B697_ARATH,A0A1P8B3F3_ARATH,A0A1P8B8K4_ARATH,A0A1P8B6R0_ARATH,A0A1P8B3F0_ARATH,A0A1P8B8L1_ARATH,A0A1P8B6Q6_ARATH,A0A1P8BAX9_ARATH,A0A1P8B6I2_ARATH,A0A1P8B3E1_ARATH,F4JNB9_ARATH,A0A1P8B919_ARATH,A0A1P8B878_ARATH,A0A1P8B6A1_ARATH,A0A1P8B5C3_ARATH,A0A1P8B8K8_ARATH,A0A1P8B3D3_ARATH,A0A1P8B6H5_ARATH,F4JNB2_ARATH,F4KDB8_ARATH,B3H733_ARATH,F4JNB8_ARATH,F4JNB6_ARATH,F4KDB9_ARATH,F4JNB0_ARATH,A0A1P8B877_ARATH Disease resistance protein RLM3 (Protein RESISTANCE TO LEPTOSPHAERIA MACULANS 3),Disease resistance protein RPP5 (Protein RECOGNITION OF PERONOSPORA PARASITICA 5),Disease resistance protein RPP4 (Protein CHILLING-SENSITIVE 2) (Protein RECOGNITION OF PERONOSPORA PARASITICA 4),Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 (AtSNC1) (Disease resistance RPP5-like protein),Disease resistance protein (TIR-NBS class),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein At5g51630),Disease resistance RPP5 like protein (Disease resistance protein (TIR-NBS-LRR class) family),Disease resistance RPP5 like protein (Putative disease resistance protein) (Toll-Interleukin-Resistance (TIR) domain-containing protein),TIR-NBS-LRR class disease resistance protein,Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) family protein,SUPPRESSOR OF, CONSTITUTIVE protein,Leucine-rich repeat (LRR) family protein Susceptible to L. maculans infection,Susceptible to L.maculans infection,WT phenotype with respect to resistance to L.Maculans infection,Susceptible to Leptosphaeria maculans Susceptible to necrotrophic fungi-C. Dixelius-2008,Resistant to downy mildew-J. Jones-1997,Altered response to fungal infection-J. Jones-1997 FUNCTION: TIR-NB-LRR receptor-like protein that confers resistance to the pathogens Leptosphaeria maculans (blackleg disease), Botrytis cinerea, Alternaria brassicicola and Alternaria brassicae. Required for efficient callose deposition downstream of RLM1 during infection with L.maculans. {ECO:0000269|PubMed:18397376}.,FUNCTION: TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis isolate Noco2 (downy mildew disease) (PubMed:9212464). Confers resistance to H.arabidopsis isolates Emoy2, Emwa1 and Noco2 (PubMed:11846877).,FUNCTION: TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis isolates Emoy2 and Emwa1 (downy mildew disease) (PubMed:11846877). Plays a role in the regulation of temperature response during plant growth and survival (PubMed:20699401). {ECO:0000269|PubMed:11846877, ECO:0000269|PubMed:20699401}.,FUNCTION: Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Nuclear localization of SNC1 is essential for its activity (PubMed:22454454). ABA deficiency can rescue high-temperature inhibition of SNC1-mediated defense responses (PubMed:22454454). {ECO:0000269|PubMed:14576290, ECO:0000269|PubMed:20647385, ECO:0000269|PubMed:22454454}. MISCELLANEOUS: A gain-of-function mutant in SNC1 resulting from a point mutation leads to a dwarf and curled-leaf phenotype and a constitutive disease resistance in the absence of cell death.; MISCELLANEOUS: The phenotypically unstable bal phenotype is caused by a duplication of the locus carrying SNC1 followed by a hypermutation of the gene.; MISCELLANEOUS: SNC1 is not found in cv. Landsberg erecta, cv. No-0, and cv. Wassilewskija and is probably unique to cv. Columbia (PubMed:15031411). Cv. RLD encodes a non-functional truncated SNC1 protein lacking most of the LRR domain (PubMed:21079790).; MISCELLANEOUS: MOS2, MOS2H, MOS12 and the MOS4-associated complex (MAC) are required for the proper splicing of R genes and contribute in the alternative splicing of SNC1. {ECO:0000269|PubMed:22248079, ECO:0000269|PubMed:23803746}. 91154,164461,130429,162713,58033,76550,91662,132303,73146,155162,91067,155915,150335,141704,139523,147730,17542,156516,84037,137934,131715,163331,161674,78080,154442,154233,102874,100762,150024,153313,114132,91675,22752,140849,112211,120306,28231,148146,117662,133862,72551,158947,130860,133471,17925,29267 Disease resistance protein RLM3 (Protein RESISTANCE TO LEPTOSPHAERIA MACULANS 3),Disease resistance protein RPP5 (Protein RECOGNITION OF PERONOSPORA PARASITICA 5),Disease resistance protein RPP4 (Protein CHILLING-SENSITIVE 2) (Protein RECOGNITION OF PERONOSPORA PARASITICA 4),Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 (AtSNC1) (Disease resistance RPP5-like protein),Disease resistance protein (TIR-NBS class),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Uncharacterized protein At5g51630),Disease resistance RPP5 like protein (Disease resistance protein (TIR-NBS-LRR class) family),Disease resistance RPP5 like protein (Putative disease resistance protein) (Toll-Interleukin-Resistance (TIR) domain-containing protein),TIR-NBS-LRR class disease resistance protein,Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) family protein,SUPPRESSOR OF, CONSTITUTIVE protein,Leucine-rich repeat (LRR) family protein ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to fungus, incompatible interaction [GO:0009817]; regulation of defense response by callose deposition [GO:2000071]; signal transduction [GO:0007165],ADP binding [GO:0043531]; ATP binding [GO:0005524]; nucleotide binding [GO:0000166]; defense response [GO:0006952]; defense response to fungus, incompatible interaction [GO:0009817]; signal transduction [GO:0007165],ADP binding [GO:0043531]; ATP binding [GO:0005524]; LRR domain binding [GO:0030275]; defense response [GO:0006952]; defense response to fungus, incompatible interaction [GO:0009817]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; nucleotide binding [GO:0000166]; defense response to bacterium [GO:0042742]; response to auxin [GO:0009733]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862],ADP binding [GO:0043531],ADP binding [GO:0043531]; signal transduction [GO:0007165],signal transduction [GO:0007165],mitochondrion [GO:0005739]; ADP binding [GO:0043531]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed in guard cells and epidermal cells, but not detected in mesophyll cells. {ECO:0000269|PubMed:22454454}. locus:2130319;,locus:2130270;,locus:2129221;,locus:2129236;,locus:2153072;,locus:2130250;,locus:2130255;,locus:2130280;,locus:2130245;,locus:2130260;,locus:2129231; AT4G16990,AT4G16950,AT4G16860,AT4G16890,AT5G51630,AT4G16920,AT4G16930,AT4G16960,AT4G16900,AT4G16940,AT4G16880 Disease resistance protein NA NA NA NA NA NA NA ENOG411EBC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EBC5 UGT76E4,UGT76E6,UGT76E3,UGT76E5 Q9STE3,Q9SNB0,Q494Q1,Q9STE6,F4J962 U76E4_ARATH,U76E6_ARATH,U76E3_ARATH,U76E5_ARATH,F4J962_ARATH UDP-glycosyltransferase 76E4 (EC 2.4.1.-),UDP-glycosyltransferase 76E6 (EC 2.4.1.-),UDP-glycosyltransferase 76E3 (EC 2.4.1.-),UDP-glycosyltransferase 76E5 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein ARA:AT3G46690-MONOMER;,ARA:AT3G46680-MONOMER;,ARA:AT3G46700-MONOMER;,ARA:AT3G46720-MONOMER; 2.4.1.- 50526,50336,50193,49882,48529 UDP-glycosyltransferase 76E4 (EC 2.4.1.-),UDP-glycosyltransferase 76E6 (EC 2.4.1.-),UDP-glycosyltransferase 76E3 (EC 2.4.1.-),UDP-glycosyltransferase 76E5 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; plasmodesma [GO:0009506]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2102837;,locus:2075150;,locus:2102847;,locus:2102737;,locus:2075210; AT3G46690,AT3G46680,AT3G46700,AT3G46720,AT3G46650 UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EBC6 O48777,A0A1P8AX66,F4IUR7,F4IUR8 O48777_ARATH,A0A1P8AX66_ARATH,F4IUR7_ARATH,F4IUR8_ARATH TRAF-like family protein (Uncharacterized protein At2g32880),TRAF-like family protein 32882,43332,48326,36728 TRAF-like family protein (Uncharacterized protein At2g32880),TRAF-like family protein integral component of membrane [GO:0016021] locus:2059364;,locus:2059354; AT2G32870,AT2G32880 MATH domain NA NA NA NA NA NA NA ENOG411EBC7 Q9SY17,Q9SY20 FB314_ARATH,FB20_ARATH Probable F-box protein At1g30780,F-box protein At1g30790 54204,45691 Probable F-box protein At1g30780,F-box protein At1g30790 locus:2196959;,locus:2196964; AT1G30780,AT1G30790 F-box associated domain NA NA NA NA NA NA NA ENOG411EBC0 BGLU21,BGLU22,BGLU23,BGLU24 Q9C525,Q9C8Y9,Q9SR37,Q9LKR7,Q8L9E4 BGL21_ARATH,BGL22_ARATH,BGL23_ARATH,BGL24_ARATH,Q8L9E4_ARATH Beta-glucosidase 21 (AtBGLU21) (EC 3.2.1.21) (Protein PHOSPHATE STARVATION-RESPONSE 3.2),Beta-glucosidase 22 (AtBGLU22) (EC 3.2.1.21),Beta-glucosidase 23 (AtBGLU23) (EC 3.2.1.21) (Protein PHOSPHATE STARVATION-RESPONSE 3.1),Beta-glucosidase 24 (AtBGLU24) (EC 3.2.1.21),At5g48175 (Transmembrane protein) Fewer ER bodies than WT. ER body area is larger than WT.,Has 35% of the beta-glucosidase activity of the wild type (Col-0). Resistant to Piriformospora indica-R. Oelmuller-2008 FUNCTION: Beta-D-glucosidase active on scopolin >> esculin >> 4-MU-glucoside > DIMBOA-glucoside. No activity with pNP-glucoside, oNP-glucoside and sinigrin as substrates. {ECO:0000269|PubMed:19965874}.,FUNCTION: Beta-D-glucosidase active on scopolin >> esculin >> 4-MU-glucoside. No activity with DIMBOA-glucoside, pNP-glucoside, oNP-glucoside and sinigrin as substrates. {ECO:0000269|PubMed:19965874}.,FUNCTION: Beta-D-glucosidase active on scopolin > esculin >> 4-MU-glucoside >> DIMBOA-glucoside. No activity with pNP-glucoside, oNP-glucoside and sinigrin as substrates. May possess beta-D-fucosidase activity. Required for the beneficial interaction with the endophytic fungus P.indica. May participate in the control of root colonization by P.indica by repressing defense responses and modulating other responses required for a mutualistic interaction. {ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:19965874}. ARA:AT1G66270-MONOMER;,ARA:AT1G66280-MONOMER;,ARA:AT3G09260-MONOMER;,ARA:AT5G28510-MONOMER; R-ATH-189085; 3.2.1.21; 3.2.1.21 59664,59781,59721,61034,13464 Beta-glucosidase 21 (AtBGLU21) (EC 3.2.1.21) (Protein PHOSPHATE STARVATION-RESPONSE 3.2),Beta-glucosidase 22 (AtBGLU22) (EC 3.2.1.21),Beta-glucosidase 23 (AtBGLU23) (EC 3.2.1.21) (Protein PHOSPHATE STARVATION-RESPONSE 3.1),Beta-glucosidase 24 (AtBGLU24) (EC 3.2.1.21),At5g48175 (Transmembrane protein) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; membrane [GO:0016020]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; cellular response to cold [GO:0070417]; cellular response to phosphate starvation [GO:0016036]; cellular response to salt stress [GO:0071472]; coumarin metabolic process [GO:0009804]; glycosyl compound metabolic process [GO:1901657]; response to cytokinin [GO:0009735]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; membrane [GO:0016020]; plasmodesma [GO:0009506]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; cellular response to cold [GO:0070417]; cellular response to salt stress [GO:0071472]; glycosyl compound metabolic process [GO:1901657]; response to salt stress [GO:0009651],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; ER body [GO:0010168]; membrane [GO:0016020]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; beta-glucosidase activity [GO:0008422]; copper ion binding [GO:0005507]; fucosidase activity [GO:0015928]; protease binding [GO:0002020]; protein homodimerization activity [GO:0042803]; scopolin beta-glucosidase activity [GO:0102483]; thioglucosidase activity [GO:0019137]; carbohydrate metabolic process [GO:0005975]; cellular response to cold [GO:0070417]; ER body organization [GO:0080119]; glucosinolate catabolic process [GO:0019762]; glucosinolate metabolic process [GO:0019760]; indole glucosinolate catabolic process [GO:0042344]; indole glucosinolate metabolic process [GO:0042343]; negative regulation of defense response [GO:0031348]; response to cytokinin [GO:0009735]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to symbiotic fungus [GO:0009610],endoplasmic reticulum lumen [GO:0005788]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed exclusively in roots. {ECO:0000269|PubMed:19965874}.,TISSUE SPECIFICITY: Expressed exclusively in roots. {ECO:0000269|PubMed:11448764, ECO:0000269|PubMed:19965874}. locus:2201492;,locus:2201502;,locus:2083524;,locus:2182768;,locus:505006680; AT1G66270,AT1G66280,AT3G09260,AT5G28510,AT5G48175 beta-glucosidase copper ion binding fucosidase hydrolase hydrolyzing O-glycosyl compounds NA NA NA NA NA NA NA ENOG411EBC1 APUM9,APUM10,PUM9 Q1PFN9,Q9LP21,A0A1P8ATL9 PUM9_ARATH,PUM10_ARATH,A0A1P8ATL9_ARATH Pumilio homolog 9 (APUM-9) (AtPUM9),Putative pumilio homolog 10 (APUM-10) (AtPUM10),Pumilio 9 FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 63251,59381,64019 Pumilio homolog 9 (APUM-9) (AtPUM9),Putative pumilio homolog 10 (APUM-10) (AtPUM10),Pumilio 9 cytoplasm [GO:0005737]; RNA binding [GO:0003723]; negative regulation of seed dormancy process [GO:1902039]; regulation of translation [GO:0006417],cytoplasm [GO:0005737]; RNA binding [GO:0003723]; regulation of translation [GO:0006417],RNA binding [GO:0003723] locus:2011349;,locus:2011360; AT1G35730,AT1G35750 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs (By similarity) NA NA NA NA NA NA NA ENOG411EBC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os08g0324200 protein Q6Z0E0 Q6Z0E0_ORYSJ Os08g0324200 Os08g0324200 OsJ_26883 OSJNBa0078D03.25 OSNPB_080324200 P0703C03.5 ENOG411EBC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDP-fucose protein O-fucosyltransferase NA NA NA NA NA NA NA ENOG411EBCN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411EBCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavodoxin-like fold NA NA NA NA NA NA NA ENOG411EBCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain NA NA NA NA NA NA NA ENOG411EBCK ASP4 P46646,A0A1P8APT9,F4I0D4 AAT4_ARATH,A0A1P8APT9_ARATH,F4I0D4_ARATH Aspartate aminotransferase, cytoplasmic isozyme 2 (EC 2.6.1.1) (Transaminase A),Aspartate aminotransferase (EC 2.6.1.1) FUNCTION: Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes.,MISCELLANEOUS: In eukaryotes there are cytoplasmic, mitochondrial and chloroplastic isozymes. {ECO:0000256|RuleBase:RU000480}. ARA:AT1G62800-MONOMER; 2.6.1.1 44358,37297,44601 Aspartate aminotransferase, cytoplasmic isozyme 2 (EC 2.6.1.1) (Transaminase A),Aspartate aminotransferase (EC 2.6.1.1) cytoplasm [GO:0005737]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; 2-oxoglutarate metabolic process [GO:0006103]; aspartate metabolic process [GO:0006531]; biosynthetic process [GO:0009058]; glutamate metabolic process [GO:0006536],L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520],cytosol [GO:0005829]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520] locus:2026262; AT1G62800 Aspartate aminotransferase NA NA NA NA NA NA NA ENOG411EBCE DREB2B,DREB2A O82133,O82132,A8MSB1 DRE2B_ARATH,DRE2A_ARATH,A8MSB1_ARATH Dehydration-responsive element-binding protein 2B (Protein DREB2B),Dehydration-responsive element-binding protein 2A (Protein DREB2A),DRE-binding protein 2A Decreased thermotolerance. Sensitive to drought and high temperature-K. Yamaguchi-Shinozaki-2006 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}. 37117,37703,33983 Dehydration-responsive element-binding protein 2B (Protein DREB2B),Dehydration-responsive element-binding protein 2A (Protein DREB2A),DRE-binding protein 2A nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; heat acclimation [GO:0010286]; pollen development [GO:0009555]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; heat acclimation [GO:0010286]; positive regulation of transcription, DNA-templated [GO:0045893]; response to heat [GO:0009408]; response to hydrogen peroxide [GO:0042542]; response to UV-B [GO:0010224]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011}.,TISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}. locus:2085527;,locus:2153504; AT3G11020,AT5G05410 DNA binding transcription activator transcription factor NA NA NA NA NA NA NA ENOG411EBCF Q9M0M7,Q9FI48,P0DI05,Q9LRW4,P0DI04,P0DI06,P0DI03,O64801,P0DI02,Q9LRW5 FB234_ARATH,FB288_ARATH,FBK13_ARATH,FB144_ARATH,FBK12_ARATH,FBK14_ARATH,FBK11_ARATH,FB78_ARATH,FBK10_ARATH,FB143_ARATH Putative F-box protein At4g17200,Putative F-box protein At5g51000,F-box/kelch-repeat protein At1g25150,Putative F-box protein At3g13830,F-box/kelch-repeat protein At1g25055,F-box/kelch-repeat protein At1g25211,F-box/kelch-repeat protein At1g24881,Putative F-box protein At1g67450,F-box/kelch-repeat protein At1g24800,Putative F-box protein At3g13825 44120,44153,49644,42451,46236,19976 Putative F-box protein At4g17200,Putative F-box protein At5g51000,F-box/kelch-repeat protein At1g25150,Putative F-box protein At3g13830,F-box/kelch-repeat protein At1g25055,F-box/kelch-repeat protein At1g25211,F-box/kelch-repeat protein At1g24881,Putative F-box protein At1g67450,F-box/kelch-repeat protein At1g24800,Putative F-box protein At3g13825 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],cytosol [GO:0005829]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2130669;,locus:2157378;,locus:6530298149;,locus:2087989;,locus:4515102587;,locus:4515102590;,locus:4515102585;,locus:2197634;,locus:4515102583; AT4G17200,AT5G51000,AT1G25150,AT3G13830,AT1G25055,AT1G25211,AT1G24881,AT1G67450,AT1G24800,AT3G13825 F-Box protein NA NA NA NA NA NA NA ENOG411EBCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBCA GSTU14,GSTU13 Q9FUT1,Q9FUS6 GSTUE_ARATH,GSTUD_ARATH Glutathione S-transferase U14 (AtGSTU14) (EC 2.5.1.18) (GST class-tau member 14) (Glutathione S-transferase 13),Glutathione S-transferase U13 (AtGSTU13) (EC 2.5.1.18) (GST class-tau member 13) (Glutathione S-transferase 12) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}.,FUNCTION: In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and benzyl isothiocyanate (BITC). May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:12090627}. ARA:AT1G27140-MONOMER;,ARA:AT1G27130-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 27229,25131 Glutathione S-transferase U14 (AtGSTU14) (EC 2.5.1.18) (GST class-tau member 14) (Glutathione S-transferase 13),Glutathione S-transferase U13 (AtGSTU13) (EC 2.5.1.18) (GST class-tau member 13) (Glutathione S-transferase 12) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; toxin catabolic process [GO:0009407] locus:2205799;,locus:2205784; AT1G27140,AT1G27130 glutathione s-transferase NA NA NA NA NA NA NA ENOG411EBCB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os09g0548600 protein A0A0P0XPZ0 A0A0P0XPZ0_ORYSJ Os09g0548600 OSNPB_090548600 ENOG411EBCC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0653500 protein,Os01g0653425 protein A0A0P0V5Z6,A0A0P0V641 A0A0P0V5Z6_ORYSJ,A0A0P0V641_ORYSJ Os01g0653500 OSNPB_010653500,Os01g0653425 OSNPB_010653425 ENOG411EBCX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cell differentiation family Rcd1-like NA NA NA NA NA NA NA ENOG411EBCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease family protein Eukaryotic aspartyl protease family protein, expressed (Os03g0318400 protein),Os03g0317900 protein Q10M95,A0A0N7KH60 Q10M95_ORYSJ,A0A0N7KH60_ORYSJ Os03g0318400 LOC_Os03g20290 Os03g0318400 OSNPB_030318400,Os03g0317900 OSNPB_030317900 ENOG411EBCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Phosphatidylinositol 4-kinase Os11g0209700 protein (Fragment) A0A0P0Y053 A0A0P0Y053_ORYSJ Os11g0209700 OSNPB_110209700 ENOG411EBCT Q6DR26 Q6DR26_ARATH DUF241 domain protein, putative (DUF241) 33272 DUF241 domain protein, putative (DUF241) locus:2827911; AT2G17680 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411EBCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EBCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-3-O-acyl N-acetylglycosamine deacetylase NA NA NA NA NA NA NA ENOG411EBCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH NA NA NA NA NA NA NA ENOG411EBCP WRKY16,RRS1,DAR4,TTR1 Q9FL92,P0DKH5,Q9FKN7,A0A1P8B850,A0A1P8B090,A0A1P8BH86,A0A1P8B852,A0A1P8BH45,F4KBS5,A0A1P8B854,A0A1P8B096,F4JT82,F4IMF0 WRK16_ARATH,WR52C_ARATH,DAR4_ARATH,A0A1P8B850_ARATH,A0A1P8B090_ARATH,A0A1P8BH86_ARATH,A0A1P8B852_ARATH,A0A1P8BH45_ARATH,F4KBS5_ARATH,A0A1P8B854_ARATH,A0A1P8B096_ARATH,F4JT82_ARATH,F4IMF0_ARATH Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16),Disease resistance protein RRS1 (Disease resistance protein RCH2) (Disease resistance protein SLH1) (Probable WRKY transcription factor 52) (Protein RPS4-homolog) (Protein SENSITIVE TO LOW HUMIDITY 1) (Resistance to Colletotrichum higginsianum 2 protein) (Resistance to Ralstonia solanacearum 1 protein) (WRKY DNA-binding protein 52),Protein DA1-related 4 (Protein CHILLING SENSITIVE 3),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20444230}. When mutant plants are grown at 16C they displayed pleiotrophic developmental defects including dwarfism small curly leaves and accelerated senescence of the cotyledons. Leaf pavement cells also have abnormal morphology. When grown on plates chs3-1 plants display an increased freezing tolerance. Plants exhibit chlorosis and spontaneous lesion phenotypes also. These plants also exhibit increased resistance to Psuedomonas syringae. Susceptible to fungal infection-Y. Narusaka-2009,Sensitive to low temperature-S. Yang-2010 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein (By similarity). {ECO:0000250}.,FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein involved in resistance to fungal and bacterial pathogens, including R.solanacearum, P.syringae pv. tomato and C.higginsianum. Heterodimerization with RPS4 is required to form a functional complex to recognize AvrRps4 and PopP2 (PubMed:24744375). Contributes to temperature-conditioned RPS4 auto-immunity (PubMed:24146667). {ECO:0000269|PubMed:10571887, ECO:0000269|PubMed:11842188, ECO:0000269|PubMed:19519800, ECO:0000269|PubMed:24146667, ECO:0000269|PubMed:24744375, ECO:0000305}.,FUNCTION: NB-LRR receptor-like protein that modulates growth, cell death and freezing tolerance in a temperature-dependent manner. May be involved in defense responses. {ECO:0000269|PubMed:20444230}. MISCELLANEOUS: Ecotypes susceptible to C.higginsianum or R.solanacearum, such as cv. Columbia, contain a protein with a premature stop codon, while the longer allele found in cv. Nd-1, cv. Wassilewskija or cv. RLD confers resistance. {ECO:0000269|PubMed:19519800}.,MISCELLANEOUS: The gain-of-function mutants chs3-1 show no visible phenotype when grown at the permissive temperature of 22 degrees Celsius. Mutant plants (chs3-1) germinated and grown at 16 degrees Celsius show developmental defects, including dwarfism, with small and curly leaves, early senescence of cotyledons, constitutively activated defense responses and enhanced tolerance to freezing temperatures. {ECO:0000269|PubMed:20444230}. 155701,145879,185137,188664,149171,139893,173783,138029,152643,175656,158985,196906,155223 Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16),Disease resistance protein RRS1 (Disease resistance protein RCH2) (Disease resistance protein SLH1) (Probable WRKY transcription factor 52) (Protein RPS4-homolog) (Protein SENSITIVE TO LOW HUMIDITY 1) (Resistance to Colletotrichum higginsianum 2 protein) (Resistance to Ralstonia solanacearum 1 protein) (WRKY DNA-binding protein 52),Protein DA1-related 4 (Protein CHILLING SENSITIVE 3),Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) nucleus [GO:0005634]; vacuolar membrane [GO:0005774]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351],ADP binding [GO:0043531]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; defense response [GO:0006952]; response to cold [GO:0009409]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165],nucleus [GO:0005634]; ADP binding [GO:0043531]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; ADP binding [GO:0043531]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; cellular response to hypoxia [GO:0071456]; signal transduction [GO:0007165] locus:2155347;,locus:2170338;,locus:2122980;,locus:2827629; AT5G45050,AT5G45260,AT5G17890,AT4G19520,AT2G17050 Transcription factor. Interacts specifically with the W box (5'-(T)TGAC CT -3') a frequently occurring elicitor- responsive cis-acting element NA NA NA NA NA NA NA ENOG411EBCQ NIFU5,NIFU4,NFU4 Q9C8J2,Q9LIG6,F4IWC5 NIFU5_ARATH,NIFU4_ARATH,F4IWC5_ARATH NifU-like protein 5, mitochondrial (AtNfu-I) (AtNfu5),NifU-like protein 4, mitochondrial (AtNfu-III) (AtNfu4),NFU domain protein 4 FUNCTION: Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins. {ECO:0000305}. 29972,30504,23940 NifU-like protein 5, mitochondrial (AtNfu-I) (AtNfu5),NifU-like protein 4, mitochondrial (AtNfu-III) (AtNfu4),NFU domain protein 4 mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; iron ion binding [GO:0005506]; iron-sulfur cluster binding [GO:0051536]; structural molecule activity [GO:0005198]; iron-sulfur cluster assembly [GO:0016226],mitochondrion [GO:0005739]; iron ion binding [GO:0005506]; iron-sulfur cluster binding [GO:0051536]; structural molecule activity [GO:0005198]; iron-sulfur cluster assembly [GO:0016226],iron ion binding [GO:0005506]; iron-sulfur cluster binding [GO:0051536]; iron-sulfur cluster assembly [GO:0016226] TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:12553879}. locus:2008311;,locus:2088781; AT1G51390,AT3G20970 Nfu_N NA NA NA NA NA NA NA ENOG411EBCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aspartic proteinase NA NA NA NA NA NA NA ENOG411EBCS Q9FKC1,Q9LYS9 B561Q_ARATH,B561H_ARATH Cytochrome b561 and DOMON domain-containing protein At5g48750 (Protein b561A.tha17),Cytochrome b561 and DOMON domain-containing protein At3g59070 (Protein b561A.tha8) FUNCTION: May act as a catecholamine-responsive trans-membrane electron transporter. {ECO:0000269|PubMed:15022831}. 28605,52008 Cytochrome b561 and DOMON domain-containing protein At5g48750 (Protein b561A.tha17),Cytochrome b561 and DOMON domain-containing protein At3g59070 (Protein b561A.tha8) integral component of membrane [GO:0016021]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2156559;,locus:2077690; AT5G48750,AT3G59070 Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411DY2W BHLH60,BHLH48,MHK10.2 Q3EAI1,Q8VZ02,A0A1P8B162,A0A1P8B161,A0NAB1 BH060_ARATH,BH048_ARATH,A0A1P8B162_ARATH,A0A1P8B161_ARATH,A0NAB1_ARATH Transcription factor bHLH60 (Basic helix-loop-helix protein 60) (AtbHLH60) (bHLH 60) (Transcription factor EN 91) (bHLH transcription factor bHLH060),Transcription factor bHLH48 (Basic helix-loop-helix protein 48) (AtbHLH48) (bHLH 48) (Transcription factor EN 97) (bHLH transcription factor bHLH048),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46575,36192,24651,30008,25296 Transcription factor bHLH60 (Basic helix-loop-helix protein 60) (AtbHLH60) (bHLH 60) (Transcription factor EN 91) (bHLH transcription factor bHLH060),Transcription factor bHLH48 (Basic helix-loop-helix protein 48) (AtbHLH48) (bHLH 48) (Transcription factor EN 97) (bHLH transcription factor bHLH048),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2076581;,locus:2053766; AT3G57800,AT2G42300 transcription factor Os06g0613500 protein (Fragment) Q0DAY8 Q0DAY8_ORYSJ Os06g0613500 Os06g0613500 OSNPB_060613500 ENOG411DY2V Q9FKV2,A0A1P8BBH9 BBE23_ARATH,A0A1P8BBH9_ARATH Berberine bridge enzyme-like 23 (AtBBE-like 23) (EC 1.1.1.-),FAD-binding Berberine family protein ARA:AT5G44360-MONOMER; 1.1.1.- 60499,62463 Berberine bridge enzyme-like 23 (AtBBE-like 23) (EC 1.1.1.-),FAD-binding Berberine family protein extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] TISSUE SPECIFICITY: Accumulates in cell walls of etiolated hypocotyls. {ECO:0000269|PubMed:18796151}. locus:2158700; AT5G44360 reticuline oxidase-like protein-like NA NA NA NA NA NA NA ENOG411DY2U T16K5.230 Q8W1E6,Q9FJW9,Q9M2X0,A0A1P8BDH2 Q8W1E6_ARATH,Q9FJW9_ARATH,Q9M2X0_ARATH,A0A1P8BDH2_ARATH AT5g67540/K9I9_10 (Arabinanase/levansucrase/invertase),Arabinanase/levansucrase/invertase (Emb|CAB66926.1),Glycosyl hydrolase family protein 43 (Uncharacterized protein At3g49880) (Uncharacterized protein T16K5.230),Arabinanase/levansucrase/invertase ARA:AT5G67540-MONOMER;,ARA:AT3G49880-MONOMER; 52952,53786,53251,56663 AT5g67540/K9I9_10 (Arabinanase/levansucrase/invertase),Arabinanase/levansucrase/invertase (Emb|CAB66926.1),Glycosyl hydrolase family protein 43 (Uncharacterized protein At3g49880) (Uncharacterized protein T16K5.230),Arabinanase/levansucrase/invertase integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2158646;,locus:2097370; AT5G67540,AT3G49880 Glycosyl hydrolase family protein 43 Glycosyl hydrolase family protein 43, putative, expressed (Os12g0406100 protein) (cDNA clone:J023054E09, full insert sequence),Beta-glucanase-like protein (Os01g0879400 protein) Q0INR6,Q5N9F8 Q0INR6_ORYSJ,Q5N9F8_ORYSJ Os12g0406100 LOC_Os12g21789 Os12g0406100 OSNPB_120406100,Os01g0879400 Os01g0879400 OSNPB_010879400 P0018C10.27 P0471B04.38 ENOG411DY2T Q9SZL5 PP356_ARATH Pentatricopeptide repeat-containing protein At4g38150 33454 Pentatricopeptide repeat-containing protein At4g38150 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2120983; AT4G38150 Pentatricopeptide repeat-containing protein Fertility restorer-like protein (Os01g0546500 protein) (cDNA clone:J023013K01, full insert sequence) Q8RYR6 Q8RYR6_ORYSJ Os01g0546500 OsJ_02158 OSJNBa0026J14.19 OSNPB_010546500 ENOG411DY2S Q9T0J6 DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like (EC 1.3.1.-) (Zinc finger CCCH domain-containing protein 50) (AtC3H50) (tRNA-dihydrouridine synthase 3-like) FUNCTION: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. 1.3.1.- 77574 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like (EC 1.3.1.-) (Zinc finger CCCH domain-containing protein 50) (AtC3H50) (tRNA-dihydrouridine synthase 3-like) vacuole [GO:0005773]; flavin adenine dinucleotide binding [GO:0050660]; metal ion binding [GO:0046872]; tRNA dihydrouridine synthase activity [GO:0017150] locus:2141821; AT4G38890 TRNA-dihydrouridine synthase tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like (EC 1.3.1.-) (Zinc finger CCCH domain-containing protein 26) (OsC3H26) (tRNA-dihydrouridine synthase 3-like),tRNA-dihydrouridine(47) synthase [NAD(P)(+)] (EC 1.3.1.-) (tRNA-dihydrouridine synthase 3) Q7XT07,A0A0P0W652 DUS3L_ORYSJ,A0A0P0W652_ORYSJ Os04g0117600 LOC_Os04g02730 OsJ_012997 OSJNBb0050O03.15,Os04g0117600 OSNPB_040117600 FUNCTION: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. ENOG411DY2Q TRZ1 Q8LGU7 RNZ1_ARATH tRNase Z TRZ1 (EC 3.1.26.11) (Nuclear ribonuclease Z) (Nuclear RNase Z) (Short tRNase Z 1) (Zinc phosphodiesterase NUZ) (tRNA 3 endonuclease) (tRNase ZS1) (AthTRZS1) DISRUPTION PHENOTYPE: No visible phenotype when grown under standard conditions. {ECO:0000269|PubMed:19411372}. FUNCTION: Zinc phosphodiesterase, which displays tRNA 3'-processing endonuclease activity (PubMed:12032089, PubMed:16118225, PubMed:18052196, PubMed:19411372). Involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA (PubMed:12032089, PubMed:18052196, PubMed:19411372). Can use bis-(p-nitophenyl) phosphate (bpNPP) as substrate (PubMed:18052196). Involved in the processing of small nucleolar RNAs (snoRNAs) (PubMed:19420328). {ECO:0000269|PubMed:12032089, ECO:0000269|PubMed:16118225, ECO:0000269|PubMed:18052196, ECO:0000269|PubMed:19411372, ECO:0000269|PubMed:19420328}. 3.1.26.11; 3.1.26.11 31333 tRNase Z TRZ1 (EC 3.1.26.11) (Nuclear ribonuclease Z) (Nuclear RNase Z) (Short tRNase Z 1) (Zinc phosphodiesterase NUZ) (tRNA 3 endonuclease) (tRNase ZS1) (AthTRZS1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-tRNA processing endoribonuclease activity [GO:0042781]; metal ion binding [GO:0046872]; tRNA 3'-end processing [GO:0042780]; tRNA processing [GO:0008033] locus:2019235; AT1G74700 nuclear ribonuclease Os02g0214300 protein (Putative nuclear ribonuclease Z) Q6H8B1 Q6H8B1_ORYSJ Os02g0214300 Os02g0214300 OJ1006_D05.15 OSNPB_020214300 ENOG411DY2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-methyltransferase NA NA NA NA NA NA NA ENOG411DY2Y Q6NQ97,A0A1P8AYF6 Q6NQ97_ARATH,A0A1P8AYF6_ARATH At2g15560 (Putative endonuclease or glycosyl hydrolase) (Uncharacterized protein At2g15560),Putative endonuclease or glycosyl hydrolase 54261,49539 At2g15560 (Putative endonuclease or glycosyl hydrolase) (Uncharacterized protein At2g15560),Putative endonuclease or glycosyl hydrolase peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468]; response to oxidative stress [GO:0006979],peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468] locus:2053567; AT2G15560 Pfam:DUF88 Os08g0230500 protein Q6ZCR7 Q6ZCR7_ORYSJ Os08g0230500 Os08g0230500 OSNPB_080230500 P0461A06.6 ENOG411DY2X cdc2cAt B5X564 B5X564_ARATH At5g39420 (CDC2C) R-ATH-674695;R-ATH-6796648; 72425 At5g39420 (CDC2C) nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468] locus:2175743; AT5G39420 serine threonine-protein kinase At1g54610-like NA NA NA NA NA NA NA ENOG411DY2G CCD1 O65572 CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 (EC 1.14.99.n4) (AtCCD1) (Neoxanthin cleavage enzyme NC1) (AtNCED1) DISRUPTION PHENOTYPE: Plants do not show any phenotype alteration, but leads to higher seed carotenoid content. {ECO:0000269|PubMed:16507088}. Mutant seeds have a 37% increase in total carotenoids relative to wild type owing mainly to a greater than twofold and fourfold increase in violaxanthin and neoxanthin respectively. The lutein levels in the mutant are increased to the greatest extent in absolute terms compared with other carotenoids.,No visible phenotype.,Double mutants were indistinguishable from bps1 single mutants. Elevated carotenoid levels in seeds; No other phenotypes detected-H. Klee-2006 FUNCTION: Cleaves a variety of carotenoids symmetrically at both the 9-10 and 9'-10' double bonds. Active on beta,beta-carotene, lutein, zeaxanthin, all-trans-violaxanthin, 9-cis-violaxanthin and 9'-cis-neoxanthin. With most substrates, the carotenoid is symmetrically cleaved. Probably not involved in abscisic acid biosynthesis. {ECO:0000269|PubMed:11316814, ECO:0000269|PubMed:16507088}. MetaCyc:AT3G63520-MONOMER; 1.14.99.n4 60908 Carotenoid 9,10(9',10')-cleavage dioxygenase 1 (EC 1.14.99.n4) (AtCCD1) (Neoxanthin cleavage enzyme NC1) (AtNCED1) cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; 9-cis-epoxycarotenoid dioxygenase activity [GO:0045549]; metal ion binding [GO:0046872]; carotene catabolic process [GO:0016121]; carotenoid catabolic process [GO:0016118]; xanthophyll catabolic process [GO:0016124] TISSUE SPECIFICITY: High expression in flowers and siliques. Also detected in stems, leaves and roots. {ECO:0000269|PubMed:16507088}. locus:2087418; AT3G63520 Carotenoid cleavage dioxygenase Os12g0640600 protein A0A0P0YD24 A0A0P0YD24_ORYSJ Os12g0640600 OSNPB_120640600 ENOG411DY2E LARP1B,LARP1b Q8RWR2,A0A1P8BBS5 LRP1B_ARATH,A0A1P8BBS5_ARATH La-related protein 1B (AtLARP1b),Winged-helix DNA-binding transcription factor family protein FUNCTION: Promotes leaf senescence. {ECO:0000269|PubMed:22965746}. 48936,37351 La-related protein 1B (AtLARP1b),Winged-helix DNA-binding transcription factor family protein cytoplasm [GO:0005737]; polysome [GO:0005844]; mRNA binding [GO:0003729]; leaf senescence [GO:0010150],DNA binding [GO:0003677] locus:2156912; AT5G66100 LA La domain containing protein, expressed (Os03g0156500 protein) Q8LMP9 Q8LMP9_ORYSJ Os03g0156500 LOC_Os03g06070 Os03g0156500 OsJ_09464 OSJNBa0011L14.12 OSNPB_030156500 ENOG411DY2A AIL5 Q6PQQ3,A0A1P8BDT2 AIL5_ARATH,A0A1P8BDT2_ARATH AP2-like ethylene-responsive transcription factor AIL5 (Protein AINTEGUMENTA-LIKE 5),AINTEGUMENTA-like 5 22.9% (72 of 314) of seedlings produced lightgreen somatic embryos at the tip margin of cotyledons. Eight percent (25 of 314) of seedlings were equipped with ectopic trichomes on the cotyledons. Elongation of roots and emergence of root hairs in AtEMKox-2 were severely inhibited in comparison to WT. Furthermore the roots of AtEMKox-2 showed aberrant structures such as tumescence of cells and entwined root hairs. In spite of the abnormal shape of roots the root apical meristem of AtEMKox-2 was morphologically identical to WT.,Defects in seed dormancy and ABA mediated inhibition of germination.Resistant to high nitrate concentrations. Seedlings insensitive to elevated nitrate-E. Nambara-2009 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. 60306,47954 AP2-like ethylene-responsive transcription factor AIL5 (Protein AINTEGUMENTA-LIKE 5),AINTEGUMENTA-like 5 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin mediated signaling pathway involved in phyllotactic patterning [GO:0060774]; ethylene-activated signaling pathway [GO:0009873]; leaf phyllotactic patterning [GO:0060772]; phyllotactic patterning [GO:0060771]; positive regulation of embryonic development [GO:0040019]; post-embryonic development [GO:0009791]; root development [GO:0048364]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. locus:2173009; AT5G57390 Transcription factor Aintegumenta-like protein (Os06g0657500 protein),Os04g0653600 protein (cDNA clone:J033072A06, full insert sequence),Os06g0657500 protein,Os06g0658000 protein Q67VJ6,Q0J9G5,A0A0N7KMJ0,A0A0P0X020 Q67VJ6_ORYSJ,Q0J9G5_ORYSJ,A0A0N7KMJ0_ORYSJ,A0A0P0X020_ORYSJ Os06g0657500 Os06g0657500 OSNPB_060657500 P0677B10.15,Os04g0653600 Os04g0653600 OSNPB_040653600,Os06g0657500 OSNPB_060657500,Os06g0658000 OSNPB_060658000 ENOG411DY2N Q9LS96 Q9LS96_ARATH At3g18800 (Transmembrane protein) 22871 At3g18800 (Transmembrane protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2093989; AT3G18800 NA Os04g0687200 protein A0A0P0WGV0 A0A0P0WGV0_ORYSJ Os04g0687200 OSNPB_040687200 ENOG411DY2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os07g0575000 protein A0A0P0X850 A0A0P0X850_ORYSJ Os07g0575000 OSNPB_070575000 ENOG411DY2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative, expressed (Os11g0607200 protein),Os11g0607200 protein (Fragment) Q2R1F3,A0A0P0Y485 Q2R1F3_ORYSJ,A0A0P0Y485_ORYSJ LOC_Os11g39370 Os11g0607200 OsJ_01300 OSNPB_110607200,Os11g0607200 OSNPB_110607200 ENOG411DY2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0625900 protein Q6K1R1 Q6K1R1_ORYSJ Os02g0625900 B1215B07.38 OsJ_07590 OSNPB_020625900 ENOG411DY27 PAM71 Q94AX5 PAM71_ARATH Protein PAM71, chloroplastic (CA(2+)/H(+) ANTIPORTER 1) (GDT1-like protein 1) (PHOTOSYNTHESIS AFFECTED MUTANT71) DISRUPTION PHENOTYPE: Defects in photosynthesis and reduced growth rate (PubMed:27302341, PubMed:27020959). Pale yellow leaves with reduced PSII activity (PubMed:27302341). Altered Ca(2+) and Mn(2+) partitioning in chloroplasts and reduced Mn(2+) binding to PSII (PubMed:27020959). {ECO:0000269|PubMed:27020959, ECO:0000269|PubMed:27302341}. FUNCTION: Mn(2+)/H(+) exchanger, which transport Mn(2+)from the chloroplast stroma into the acidic thylakoid lumen (PubMed:27020959). Might be a chloroplast-localized Ca(2+)/H(+) antiporter (PubMed:27302341). Regulates Ca(2+), Mn(2+) and pH homeostasis (PubMed:27302341). Required for chloroplast development (PubMed:27302341). {ECO:0000269|PubMed:27020959, ECO:0000269|PubMed:27302341}. 39074 Protein PAM71, chloroplastic (CA(2+)/H(+) ANTIPORTER 1) (GDT1-like protein 1) (PHOTOSYNTHESIS AFFECTED MUTANT71) chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; magnesium ion transmembrane transporter activity [GO:0015095]; manganese ion transmembrane transporter activity [GO:0005384]; calcium ion transport [GO:0006816]; manganese ion transport [GO:0006828]; photosystem II oxygen evolving complex assembly [GO:0010270] locus:2024628; AT1G64150 GDT1-like protein 1 GDT1-like protein 1, chloroplastic,Os01g0221700 protein (Fragment) Q5NAY7,A0A0P0UZQ8 GDT11_ORYSJ,A0A0P0UZQ8_ORYSJ Os01g0221700 LOC_Os01g12220 OsJ_00919 P0443E05.5 P0483F08.42,Os01g0221700 OSNPB_010221700 ENOG411DY24 PUB31,PUB30 Q9FHN9,Q058P4 PUB31_ARATH,PUB30_ARATH U-box domain-containing protein 31 (EC 2.3.2.27) (Plant U-box protein 31) (RING-type E3 ubiquitin transferase PUB31),U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 48873,48994 U-box domain-containing protein 31 (EC 2.3.2.27) (Plant U-box protein 31) (RING-type E3 ubiquitin transferase PUB31),U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) ubiquitin-protein transferase activity [GO:0004842],ubiquitin protein ligase activity [GO:0061630]; cellular response to salt stress [GO:0071472]; negative regulation of response to salt stress [GO:1901001] locus:2152049;,locus:2097390; AT5G65920,AT3G49810 U-box domain-containing protein U-box domain-containing protein 75 (OsPUB75) (EC 2.3.2.27) (Protein ERECT LEAF 1) (Protein TAIHU DWARF1) (RING-type E3 ubiquitin transferase PUB75) Q10PI9 PUB75_ORYSJ TUD1 ELF1 PUB75 Os03g0232600 LOC_Os03g13010 OJ1175C11.15 DISRUPTION PHENOTYPE: Dwarf phenotype with erect leaves and short grains (PubMed:24299927, PubMed:23526892). Dwarf phenotype is mainly due to decreased cell proliferation and disorganized cell files in aerial organs (PubMed:23526892). {ECO:0000269|PubMed:23526892, ECO:0000269|PubMed:24299927}. FUNCTION: E3 ubiquitin ligase that may function as positive regulator of brassinosteroid (BR) signaling. Possesses E3 ubiquitin ligase in vitro (PubMed:24299927, PubMed:23526892). Acts together with the heterotrimeric G alpha subunit GPA1 at the plasma membrane to mediate a BR signaling pathway that affects plant growth and development. Does not seem to be involved in gibberellin or cytokinin responses (PubMed:23526892). {ECO:0000269|PubMed:23526892, ECO:0000269|PubMed:24299927}. ENOG411DY23 P46086 KIME_ARATH Mevalonate kinase (MK) (EC 2.7.1.36) FUNCTION: Catalyzes the phosphorylation of mevalonate to mevalonate 5-phosphate, a key step in isoprenoid and cholesterol biosynthesis. {ECO:0000250|UniProtKB:Q03426}. PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway; isopentenyl diphosphate from (R)-mevalonate: step 1/3. MetaCyc:AT5G27450-MONOMER; R-ATH-191273; Biosynthesis of secondary metabolites (01110),Peroxisome (04146),Terpenoid backbone biosynthesis (00900),Metabolic pathways (01100) 2.7.1.36 40644 Mevalonate kinase (MK) (EC 2.7.1.36) cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; mevalonate kinase activity [GO:0004496]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287]; sterol biosynthetic process [GO:0016126]; sterol metabolic process [GO:0016125] locus:2146375; AT5G27450 mevalonate Mevalonate kinase (MK) (EC 2.7.1.36) Q339V1 Q339V1_ORYSJ LOC_Os10g18220 Os10g0329300 OSNPB_100329300 ENOG411DY22 AMK2 Q9FIJ7,A0A1P8B9K9 KAD2_ARATH,A0A1P8B9K9_ARATH Adenylate kinase 2, chloroplastic (AK 2) (EC 2.7.4.3) (ATP-AMP transphosphorylase 2) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 2) (AMK2),Adenosine monophosphate kinase DISRUPTION PHENOTYPE: Seedling lethality when homozygous, due to loss of chloroplast integrity, causing a bleached phenotype from early embryo to seedling development. {ECO:0000269|PubMed:18162585}. FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. Plays a major role in the equilibration of adenylates and de novo synthesis of ADP in the plastid stroma. {ECO:0000269|PubMed:18162585}. ARA:AT5G47840-MONOMER; R-ATH-499943; 2.7.4.3; 2.7.4.3 31452,29871 Adenylate kinase 2, chloroplastic (AK 2) (EC 2.7.4.3) (ATP-AMP transphosphorylase 2) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 2) (AMK2),Adenosine monophosphate kinase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524]; regulation of energy homeostasis [GO:2000505],adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524] locus:2160942; AT5G47840 adenylate kinase Probable adenylate kinase 2, chloroplastic (EC 2.7.4.3) (Adenylate monophosphate kinase 2) Q6ZC69 KAD2_ORYSJ Os08g0109300 LOC_Os08g01770 P0007D08.12 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ENOG411DY21 GSO2,GSO1 Q9FIZ3,C0LGQ5 GSO2_ARATH,GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 (EC 2.7.11.1) (Protein EMBRYO SAC DEVELOPMENT ARREST 23) (Protein GASSHO 2),LRR receptor-like serine/threonine-protein kinase GSO1 (EC 2.7.11.1) (Protein GASSHO 1) (Protein SCHENGEN 3) DISRUPTION PHENOTYPE: No visible phenotype during embryogenesis and seedling development. Arrested at two-nuclear stage and unfused polar nuclei. Gso1 and gso2 double mutants produce slightly contorted seeds, with abnormally shaped embryos and seedlings; adhesion between cotyledons and the peripheral tissue of the endosperm, short hypocotyl, and concave cotyledons sometimes fused, with compressed epidermal cells, endosperm tissue partially adherent to the surface of the cotyledons, and a rough surface. In addition, seedlings of gso1 gso2 have also root growth and patterning defects characterized by abnormal numbers of cells in longitudinal files and radial cell layers, as well as aberrant stem cell division planes. Root growth arrest and cell divisions defects are rescued by exogenous application of sucrose, but not patterning defects (PubMed:24123341). The double mutant gso1 gso2 exhibits a repeatedly interrupted, discontinuous Casparian strip due to patch-like localization of the CASPs proteins (PubMed:28104889). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:18088309, ECO:0000269|PubMed:24123341, ECO:0000269|PubMed:28104889}.,DISRUPTION PHENOTYPE: Dramatic defect in endodermal barrier formation leading to altered potassium ion (K) homeostasis and hypersensitivity to low potassium conditions. Casparian strips are repeatedly interrupted, forming irregularly-sized holes of several micrometer in length, probably due to abnormal CASP proteins patterning. Suppresses the enhanced suberin production when combined to other Casparian strip-defective mutants such as esb1 and casp1 casp3. Extremely sensitive to changes in environmental conditions such as high temperatures and under long-day (LD) conditions leading to dwarf plants. Normal transpiration but altered water transport and root pressure (PubMed:25233277). No visible phenotype during embryogenesis and seedling development. Gso1 and gso2 double mutants produce slightly contorted seeds, with abnormally shaped embryos and seedlings; adhesion between cotyledons and the peripheral tissue of the endosperm, short hypocotyl, and concave cotyledons sometimes fused, with compressed epidermal cells, endosperm tissue partially adherent to the surface of the cotyledons, and a rough surface. In addition, seedlings of gso1 gso2 have also root growth and patterning defects characterized by abnormal numbers of cells in longitudinal files and radial cell layers, as well as aberrant stem cell division planes. Root growth arrest and cell divisions defects are rescued by exogenous application of sucrose, but not patterning defects (PubMed:24123341). The double mutant gso1 gso2 exhibits a repeatedly interrupted, discontinuous Casparian strip due to patch-like localization of the CASPs proteins as a result of partial fusion of individual CASP containing islands in the Casparian strip membrane domain (CSD) (PubMed:28104889). {ECO:0000269|PubMed:18088309, ECO:0000269|PubMed:24123341, ECO:0000269|PubMed:25233277, ECO:0000269|PubMed:28104889}. abnormal bending of embryos ectopic adhesion between cotyledons a highly permeable epidermal structure and an abnormal pattern of distribution of stomata on cotyledons in embryos and seedlings FUNCTION: Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. In coordination with GSO2, regulates root growth through control of cell division and cell fate specification. Controls seedling root growth by modulating sucrose response after germination (PubMed:24123341). Receptor of the peptide hormones CIF1 and CIF2 required for contiguous Casparian strip diffusion barrier formation in roots (PubMed:28104889). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:18088309, ECO:0000269|PubMed:24123341, ECO:0000269|PubMed:28104889}.,FUNCTION: Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons (PubMed:18088309). In coordination with GSO2, regulates root growth through control of cell division and cell fate specification. Controls seedling root growth by modulating sucrose response after germination (PubMed:24123341). Receptor of the peptide hormones CIF1 and CIF2 required for contiguous Casparian strip diffusion barrier formation in roots (PubMed:28104889). Required for localizing CASP proteins into the Casparian strip following an uninterrupted, ring-like domain, to trigger endodermal differentiation and thus regulate potassium ion (K) homeostasis. Involved in the maintenance of water transport and root pressure. May also be involved in the regulation of suberin accumulation in the endodermis (PubMed:25233277). {ECO:0000269|PubMed:18088309, ECO:0000269|PubMed:24123341, ECO:0000269|PubMed:25233277, ECO:0000269|PubMed:28104889}. 2.7.11.1 137532,137288 LRR receptor-like serine/threonine-protein kinase GSO2 (EC 2.7.11.1) (Protein EMBRYO SAC DEVELOPMENT ARREST 23) (Protein GASSHO 2),LRR receptor-like serine/threonine-protein kinase GSO1 (EC 2.7.11.1) (Protein GASSHO 1) (Protein SCHENGEN 3) Casparian strip [GO:0048226]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell wall organization [GO:0071555]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; plant epidermis development [GO:0090558]; regulation of cell division [GO:0051302]; regulation of cell fate specification [GO:0042659]; regulation of root development [GO:2000280]; regulation of root morphogenesis [GO:2000067]; specification of plant organ axis polarity [GO:0090708],Casparian strip [GO:0048226]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell wall organization [GO:0071555]; embryo development ending in seed dormancy [GO:0009793]; endodermal cell differentiation [GO:0035987]; establishment of protein localization [GO:0045184]; plant epidermis development [GO:0090558]; potassium ion homeostasis [GO:0055075]; regulation of cell division [GO:0051302]; regulation of cell fate specification [GO:0042659]; regulation of endodermal cell differentiation [GO:1903224]; regulation of root development [GO:2000280]; regulation of root morphogenesis [GO:2000067]; response to wounding [GO:0009611]; specification of plant organ axis polarity [GO:0090708]; water homeostasis [GO:0030104]; water transport [GO:0006833] DEVELOPMENTAL STAGE: In flower buds, localized in pollen grains and the separation layer between the bud and the peduncle. During embryogenesis, uniform expression from the globular embryo to the mature cotyledonary embryo, except in the embryo suspensor. After germination, detected in whole cotyledons and in the hypocotyl. Detected in the aerial tissue of 1-3-day-old seedlings, and in the root epidermis and lateral root cap cells. Within the epidermis, mostly expressed in H cells during the first three days after germination (DAG) and becomes restricted to these H cells in mature roots. In the root apical meristem (RAM), mostly confined to the quiescent center (QC) by six DAG. Mostly observed in the outer layers of the mature root and the RAM, including the QC (PubMed:24123341). {ECO:0000269|PubMed:18088309, ECO:0000269|PubMed:24123341}.,DEVELOPMENTAL STAGE: In flower buds, localized in filaments and stigmas. During embryogenesis, uniform expression from the globular embryo to the mature cotyledonary embryo. After germination, detected in whole cotyledons and in the hypocotyl. During the 6 first days after germination (DAG), highly expressed in roots throughout the elongation zone (EZ) and differentiation zone, but restricted to the endodermis and vasculature. Accumulates progressively in the quiescent center (QC). Down-regulated at sites of lateral root primordia (LRP) initiation. Absent at sites of deliberate wounding in the root. Mostly observed in the inner layers of the mature root, the QC and shoot apical meristem (SAM) (PubMed:24123341). Expressed early during endodermal differentiation, shortly after the onset of endodermal cells elongation (PubMed:25233277). {ECO:0000269|PubMed:18088309, ECO:0000269|PubMed:24123341, ECO:0000269|PubMed:25233277}. TISSUE SPECIFICITY: Mostly expressed in siliques, seeds, developing embryos and seedlings, detected in flower buds, but not in roots, leaves or stems. {ECO:0000269|PubMed:18088309}.,TISSUE SPECIFICITY: Mostly expressed in siliques, seeds, developing embryos and seedlings, detected in flower buds and roots, but not in leaves or stems. {ECO:0000269|PubMed:18088309}. locus:2156349;,locus:2120362; AT5G44700,AT4G20140 LRR receptor-like serine threonine-protein kinase Os07g0498400 protein Q0D699 Q0D699_ORYSJ Os07g0498400 Os07g0498400 OSNPB_070498400 ENOG411DY20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411DTTP FLY1,FLY2 Q5PP23,Q500V2 Q5PP23_ARATH,Q500V2_ARATH At4g28370 (RING/U-box superfamily protein),At2g20650 (RING/U-box superfamily protein) FUNCTION: E3 ubiquitin-protein ligase that regulates the degree of methylesterification of pectin in seed mucilage. May be involved in the recycling of pectin methylesterase enzymes in the endomembrane system of seed coat epidermal cells. Possesses E3 ubiquitin-protein ligase activity in vitro when associated with the E1 enzyme UBA1 and the E2 enzyme UBC8. May be involved in xylem development. {ECO:0000269|PubMed:23482858}.,FUNCTION: E3 ubiquitin-protein ligase that may be involved in xylem development. {ECO:0000305|PubMed:23482858}. 64604,63945 At4g28370 (RING/U-box superfamily protein),At2g20650 (RING/U-box superfamily protein) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; mucilage extrusion from seed coat [GO:0080001]; mucilage pectin metabolic process [GO:0048363]; plant-type cell wall modification [GO:0009827]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; plant-type cell wall modification [GO:0009827]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2121333;,locus:2046036; AT4G28370,AT2G20650 zinc finger Os07g0501900 protein (Fragment),Os07g0501900 protein A0A0P0X695,A0A0P0X682,A0A0N7KNH7 A0A0P0X695_ORYSJ,A0A0P0X682_ORYSJ,A0A0N7KNH7_ORYSJ Os07g0501900 OSNPB_070501900 ENOG411DTTR CRK27,CRK7,CRK10,CRK26,CRK29,CRK15,CRK28,CRK6,CRK8,CRRSP1,CRK23,CRK25 O49564,Q8L7G3,Q8GYA4,Q9T0J1,Q8S9L6,Q8W4G6,O65405,Q9C5S9,O65468,Q9SYB1,O65482,Q9M0X5,A0A1P8B5U6,A0A1P8B8X4,A0A1P8B5W3,A0A1P8B5V9,A0A1P8B597,A0A1P8B575,A0A1P8B7N7,A0A1P8B5W7,A0A1P8B5W4 CRK27_ARATH,CRK7_ARATH,CRK10_ARATH,CRK26_ARATH,CRK29_ARATH,CRK15_ARATH,CRK28_ARATH,CRK6_ARATH,CRK8_ARATH,CRRS1_ARATH,CRK23_ARATH,CRK25_ARATH,A0A1P8B5U6_ARATH,A0A1P8B8X4_ARATH,A0A1P8B5W3_ARATH,A0A1P8B5V9_ARATH,A0A1P8B597_ARATH,A0A1P8B575_ARATH,A0A1P8B7N7_ARATH,A0A1P8B5W7_ARATH,A0A1P8B5W4_ARATH Cysteine-rich receptor-like protein kinase 27 (Cysteine-rich RLK27) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 7 (Cysteine-rich RLK7) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 10 (Cysteine-rich RLK10) (EC 2.7.11.-) (Receptor-like protein kinase 4),Cysteine-rich receptor-like protein kinase 26 (Cysteine-rich RLK26) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 29 (Cysteine-rich RLK29) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 15 (Cysteine-rich RLK15) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 28 (Cysteine-rich RLK28) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 6 (Cysteine-rich RLK6) (EC 2.7.11.-) (Receptor-like protein kinase 5),Cysteine-rich receptor-like protein kinase 8 (Cysteine-rich RLK8) (EC 2.7.11.-),Cysteine-rich repeat secretory protein 1,Putative cysteine-rich receptor-like protein kinase 23 (Cysteine-rich RLK23) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 25 (Cysteine-rich RLK25) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 28,Cysteine-rich RLK (RECEPTOR-like protein kinase) 29,Cysteine-rich RLK (RECEPTOR-like protein kinase) 10,Cysteine-rich RLK (RECEPTOR-like protein kinase) 25 2.7.11.- 71935,73925,74283,74355,75720,69705,75908,74501,75412,38617,92316,75349,61901,58742,63604,57313,64941,57021,77519,74456,74948 Cysteine-rich receptor-like protein kinase 27 (Cysteine-rich RLK27) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 7 (Cysteine-rich RLK7) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 10 (Cysteine-rich RLK10) (EC 2.7.11.-) (Receptor-like protein kinase 4),Cysteine-rich receptor-like protein kinase 26 (Cysteine-rich RLK26) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 29 (Cysteine-rich RLK29) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 15 (Cysteine-rich RLK15) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 28 (Cysteine-rich RLK28) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 6 (Cysteine-rich RLK6) (EC 2.7.11.-) (Receptor-like protein kinase 5),Cysteine-rich receptor-like protein kinase 8 (Cysteine-rich RLK8) (EC 2.7.11.-),Cysteine-rich repeat secretory protein 1,Putative cysteine-rich receptor-like protein kinase 23 (Cysteine-rich RLK23) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 25 (Cysteine-rich RLK25) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 28,Cysteine-rich RLK (RECEPTOR-like protein kinase) 29,Cysteine-rich RLK (RECEPTOR-like protein kinase) 10,Cysteine-rich RLK (RECEPTOR-like protein kinase) 25 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; response to reactive oxygen species [GO:0000302],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; response to abscisic acid [GO:0009737],extracellular region [GO:0005576],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2127323;,locus:2121636;,locus:2121676;,locus:2141762;,locus:2141201;,locus:2121621;,locus:2121651;,locus:2195778;,locus:2121626;,locus:2115728; AT4G21230,AT4G23150,AT4G23180,AT4G38830,AT4G21410,AT4G23230,AT4G21400,AT4G23140,AT4G23160,AT1G61750,AT4G23310,AT4G05200 Cysteine-rich receptor-like protein kinase Os05g0493100 protein,Os07g0628900 protein (Putative receptor-like protein kinase 4) (cDNA clone:J013073N09, full insert sequence),Os07g0540100 protein (Putative serine/threonine kinase protein) (cDNA clone:J033060N20, full insert sequence),Os07g0537400 protein,Os11g0549300 protein (Fragment),Os01g0568800 protein (Fragment),Os07g0537000 protein (Fragment),Os11g0549000 protein,Os02g0212900 protein (Fragment) Q6F328,Q8GSC2,Q7XHL0,A0A0N7KNL2,A0A0N7KT20,A0A0P0V4B7,A0A0P0X6U9,A0A0P0Y3D4,A0A0P0VGB8 Q6F328_ORYSJ,Q8GSC2_ORYSJ,Q7XHL0_ORYSJ,A0A0N7KNL2_ORYSJ,A0A0N7KT20_ORYSJ,A0A0P0V4B7_ORYSJ,A0A0P0X6U9_ORYSJ,A0A0P0Y3D4_ORYSJ,A0A0P0VGB8_ORYSJ Os05g0493100 Os05g0493100 OSJNBa0088I06.18 OSNPB_050493100,P0011H09.110 P0506F02.124 Os07g0628900 OSNPB_070628900,P0458H05.109 Os07g0540100 OSNPB_070540100,Os07g0537400 OSNPB_070537400,Os11g0549300 OSNPB_110549300,Os01g0568800 OSNPB_010568800,Os07g0537000 OSNPB_070537000,Os11g0549000 OSNPB_110549000,Os02g0212900 OSNPB_020212900 ENOG411DTTS RBL14 Q8RXW0 RBL14_ARATH Rhomboid-like protein 14, mitochondrial (AtRBL14) (EC 3.4.21.-) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in the heat-shock response pathway. {ECO:0000303|PubMed:22007993}. 3.4.21.- 37150 Rhomboid-like protein 14, mitochondrial (AtRBL14) (EC 3.4.21.-) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; serine-type endopeptidase activity [GO:0004252] locus:1005716534; AT3G17611 Rhomboid family OSJNBa0004B13.13 protein (Os01g0283500 protein),Os01g0283500 protein Q9AQU7,A0A0P0V144 Q9AQU7_ORYSJ,A0A0P0V144_ORYSJ P0498A12.2-1 OSJNBa0004B13.13 P0581F09.23-1 Os01g0283500 OsJ_01336 OSNPB_010283500,Os01g0283500 OSNPB_010283500 ENOG411DTTU APL Q9SAK5 APL_ARATH Myb family transcription factor APL (AtAPL) (Protein ALTERED PHLOEM DEVELOPMENT) (Protein FE) (Protein PHOSPHATE STARVATION RESPONSE 2) (AtPHR2) (Protein PHR1-LIKE 14) (Protein WOODY) DISRUPTION PHENOTYPE: Differentiation of tracheary-like elements of xyleme at the site of the phloem pole leading to seedling lethality. {ECO:0000269|PubMed:14614507}. FUNCTION: Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. 39598 Myb family transcription factor APL (AtAPL) (Protein ALTERED PHLOEM DEVELOPMENT) (Protein FE) (Protein PHOSPHATE STARVATION RESPONSE 2) (AtPHR2) (Protein PHR1-LIKE 14) (Protein WOODY) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; phloem development [GO:0010088]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; xylem development [GO:0010089] DEVELOPMENTAL STAGE: Specifically expressed in the developing protophloem sieve elements soon after the phloem-specific cell divisions have taken place. Also found in the companion cells and metaphloem sieve elements. May not be necessary for the initial steps of protophloem differentiation. {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061}. TISSUE SPECIFICITY: Expressed in shoots and roots, specifically in the developing protophloem sieve elements (PubMed:14614507). Detected in phloem and/or cambium (PubMed:15923329). Expressed in the phloem tissues of various organs, including leaves and cotyledons, during vegetative growth (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:26239308}. locus:2206415; AT1G79430 MYB family transcription factor Os02g0174000 protein A0A0P0VFF5 A0A0P0VFF5_ORYSJ Os02g0174000 OSNPB_020174000 ENOG411DTTV CYP95 Q8RWY7 CYP95_ARATH Peptidyl-prolyl cis-trans isomerase CYP95 (AtCYP95) (PPIase CYP95) (EC 5.2.1.8) (Cyclophilin-like protein CypRS92) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 94630 Peptidyl-prolyl cis-trans isomerase CYP95 (AtCYP95) (PPIase CYP95) (EC 5.2.1.8) (Cyclophilin-like protein CypRS92) nucleus [GO:0005634]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Expressed in leaves, flowers, roots and stems. {ECO:0000269|PubMed:15051864}. locus:2127786; AT4G32420 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NA NA NA NA NA NA NA ENOG411DTTW CLO,GFL Q9LNC5,F4JWP9 CLO_ARATH,GFL_ARATH 110 kDa U5 small nuclear ribonucleoprotein component CLO (Protein CLOTHO) (Protein GAMETOPHYTE FACTOR 1) (Protein MATERNAL EFFECT EMBRYO ARREST 5) (Protein VAJRA-1) (SNU114 homolog),109 kDa U5 small nuclear ribonucleoprotein component GFL (Protein GFA1-LIKE) (SNU114 homolog) DISRUPTION PHENOTYPE: Gametophytic lethality due to female gametophyte defect, when homozygous. {ECO:0000269|PubMed:18702672, ECO:0000269|Ref.4}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|Ref.3}. Embryo defective; Male and female gametophyte defective-W. Yang-2009 FUNCTION: Splicing factor involved in pre-mRNA splicing and component of the spliceosome (PubMed:18702672, PubMed:19168457). Essential for reproduction. In female gametophyte, is necessary for the egg cell and central cell fate determination and hence reproductive success. Involved in a mechanism that prevents accessory cells from adopting gametic cell fate. Is necessary to restrict LIS expression to interfere with egg-cell specification (PubMed:18702672). Probable component of U5 small nuclear ribonucleoprotein (snRNP) that is required for pre-mRNA splicing. Plays an essential role in female gametogenesis and embryo development (PubMed:19261069). Required for the control of polarized cell growth and cell proliferation during floral organ morphogenesis (PubMed:19168457). {ECO:0000269|PubMed:18702672, ECO:0000269|PubMed:19168457, ECO:0000269|PubMed:19261069}.,FUNCTION: Splicing factor involved in pre-mRNA splicing and component of the spliceosome. {ECO:0000250|UniProtKB:Q9LNC5}. "MISCELLANEOUS: This protein was named ""VAJRA"", because the shape of flower buds when ready to open resemble VAJRA, an instrument used in esoteric Buddhism. {ECO:0000303|PubMed:19168457}." R-ATH-72163;R-ATH-72165; 110442,108804 110 kDa U5 small nuclear ribonucleoprotein component CLO (Protein CLOTHO) (Protein GAMETOPHYTE FACTOR 1) (Protein MATERNAL EFFECT EMBRYO ARREST 5) (Protein VAJRA-1) (SNU114 homolog),109 kDa U5 small nuclear ribonucleoprotein component GFL (Protein GFA1-LIKE) (SNU114 homolog) cell wall [GO:0005618]; nuclear speck [GO:0016607]; plasma membrane [GO:0005886]; spliceosomal complex [GO:0005681]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; embryo development ending in seed dormancy [GO:0009793]; floral organ development [GO:0048437]; mRNA processing [GO:0006397]; regulation of embryo sac egg cell differentiation [GO:0045694]; RNA splicing [GO:0008380],nuclear speck [GO:0016607]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; spliceosomal complex [GO:0005681]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] DEVELOPMENTAL STAGE: Expressed in developing embryos until heart stage. {ECO:0000269|PubMed:19261069}. TISSUE SPECIFICITY: Expressed in flower buds, open flowers and siliques. Expressed at low levels in rosettes leaves, cauline leaves and stems. {ECO:0000269|Ref.4}.,TISSUE SPECIFICITY: Expressed in flower buds, open flowers and siliques. Expressed at low levels in rosettes leaves, cauline leaves and stems. {ECO:0000269|Ref.3}. locus:2038555;,locus:2146950; AT1G06220,AT5G25230 U5 small nuclear ribonucleoprotein Os06g0608300 protein (Putative elongation factor 2) (cDNA clone:J033113H11, full insert sequence),Os06g0608300 protein (Fragment) Q69V60,A0A0P0WYI7 Q69V60_ORYSJ,A0A0P0WYI7_ORYSJ Os06g0608300 Os06g0608300 OSNPB_060608300 P0556B08.14,Os06g0608300 OSNPB_060608300 ENOG411DTTX AVT1A O80668,A0A1P8AX86 AVT1A_ARATH,A0A1P8AX86_ARATH Amino acid transporter AVT1A (AtAvt1A),Transmembrane amino acid transporter family protein R-ATH-425393;R-ATH-888590; 58863,56000 Amino acid transporter AVT1A (AtAvt1A),Transmembrane amino acid transporter family protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021] locus:2063255; AT2G41190 amino acid transporter Amino acid transporter-like (Os02g0788800 protein) Q6K4N6 Q6K4N6_ORYSJ Os02g0788800 OJ1046_F07.2-1 OSJNBa0054K20.28-1 OSNPB_020788800 ENOG411DTTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nicotianamine synthase protein NA NA NA NA NA NA NA ENOG411DTTB Q0WQ61,A0A1P8AU43,A0A1P8AU29,A8MRJ1 Q0WQ61_ARATH,A0A1P8AU43_ARATH,A0A1P8AU29_ARATH,A8MRJ1_ARATH Lipase class 3 family protein (Uncharacterized protein At1g05790),Lipase class 3 family protein 57777,56952,81167,76946 Lipase class 3 family protein (Uncharacterized protein At1g05790),Lipase class 3 family protein hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2198713; AT1G05790 Lipase (class 3) Os01g0900200 protein (Fragment) A0A0P0VBK1 A0A0P0VBK1_ORYSJ Os01g0900200 OSNPB_010900200 ENOG411DTTC F4JXY6,F4JXY5 F4JXY6_ARATH,F4JXY5_ARATH Ephrin type-B receptor 156499,152465 Ephrin type-B receptor integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; vacuole [GO:0005773],integral component of membrane [GO:0016021] locus:2181900; AT5G11700 glycine-rich protein Os01g0187400 protein,Os05g0185650 protein (Fragment) Q5SNE1,A0A0P0WIW8 Q5SNE1_ORYSJ,A0A0P0WIW8_ORYSJ Os01g0187400 OSNPB_010187400 P0512G09.9 P0695A04.18,Os05g0185650 OSNPB_050185650 ENOG411DTTD GULLO3 Q9LYD8 GGLO3_ARATH L-gulonolactone oxidase 3 (AtGulLO3) (EC 1.1.3.8) FUNCTION: Catalyzes the oxidation of L-gulono-1,4-lactone to ascorbic acid (PubMed:20622436). L-gulono-1,4-lactone is oxidized to hydrogen peroxide and L-xylo-hexulonolactone which spontaneously isomerizes to L-ascorbate (By similarity). {ECO:0000250|UniProtKB:P58710, ECO:0000269|PubMed:20622436}. PATHWAY: Cofactor biosynthesis; L-ascorbate biosynthesis. {ECO:0000269|PubMed:20622436}. 1.1.3.37;1.1.3.8; 1.1.3.8 64961 L-gulonolactone oxidase 3 (AtGulLO3) (EC 1.1.3.8) membrane [GO:0016020]; vacuole [GO:0005773]; D-arabinono-1,4-lactone oxidase activity [GO:0003885]; flavin adenine dinucleotide binding [GO:0050660]; L-gulonolactone oxidase activity [GO:0050105]; L-ascorbic acid biosynthetic process [GO:0019853] locus:2144251; AT5G11540 FAD-binding and arabino-lactone oxidase domains containing protein Os08g0114300 protein (Putative oxidase-like) (cDNA clone:001-204-A07, full insert sequence),Os04g0190000 protein (Fragment),Os08g0519100 protein (Oxidase-like) (cDNA clone:001-113-D10, full insert sequence),Os02g0124400 protein (Fragment),FAD-binding domain-containing protein, putative, expressed (Os03g0563100 protein) (cDNA clone:002-116-B07, full insert sequence),Os08g0519100 protein (Oxidase-like),FAD binding domain containing protein-like (Os01g0687800 protein),Os02g0124600 protein,Os02g0124599 protein,Os04g0361500 protein Q6YXT5,Q0JEX3,Q7EZA7,Q0E4D6,Q10I64,Q7EZA6,Q8S9W7,A0A0P0VE34,A0A0P0VE50,A0A0P0W9H9 Q6YXT5_ORYSJ,Q0JEX3_ORYSJ,Q7EZA7_ORYSJ,Q0E4D6_ORYSJ,Q10I64_ORYSJ,Q7EZA6_ORYSJ,Q8S9W7_ORYSJ,A0A0P0VE34_ORYSJ,A0A0P0VE50_ORYSJ,A0A0P0W9H9_ORYSJ Os08g0114300 Os08g0114300 OSNPB_080114300 P0427G12.16,Os04g0190000 Os04g0190000 OSNPB_040190000,P0700D12.134-1 Os08g0519100 P0689E12.10-1 OsJ_27950 OSNPB_080519100,Os02g0124400 Os02g0124400 OSNPB_020124400,LOC_Os03g36530 Os03g0563100 OSNPB_030563100,P0700D12.134-2 P0689E12.10-2 Os08g0519100 OSNPB_080519100,Os01g0687800 OSNPB_010687800 P0519D04.25,Os02g0124600 OSNPB_020124600,Os02g0124599 OSNPB_020124599,Os04g0361500 OSNPB_040361500 ENOG411DTTE ACD11 O64587 ACD11_ARATH Accelerated cell death 11 (Ceramide-1-phosphate transfer protein ACD11) (Glycolipid transfer protein domain-containing protein ACD11) DISRUPTION PHENOTYPE: Constitutive expression of defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. Induction of growth inhibition, premature leaf chlorosis and defense-related programmed cell death (PCD) at the early seedling stage, leading to a lethal phenotype before flowering (PubMed:11850411, PubMed:15923330). Large increase of cell death inducer phytoceramide (PubMed:24412362). {ECO:0000269|PubMed:11850411, ECO:0000269|PubMed:15923330, ECO:0000269|PubMed:24412362}. Defense marker genes SAG13 FMO and PR1 are very strongly expressed in the mutant. Ethylene-induced genes PR3 and EFR1 were induced whereas PDF1.2 was not.,Same phenotype as that of single mutant acd11. High penetrance of rosette lethality-J. Mundy-2002 FUNCTION: Exhibits selective intermembrane transfer of ceramide-1-phosphate (C1P) and phytoceramide-1-phosphate (PubMed:24412362, PubMed:28011644). Does not transport ceramide (Cer) or GalCer, suggesting a requirement for phosphate in the headgroup for functionality (PubMed:24412362). Transports in vitro sphingosine, but not glycosphigolipids (PubMed:11850411). Has also some in vitro activity with sphingomyelin, a lipid not detected in plant tissues (PubMed:18657186). The transport function may be not directly involved in regulating cell death. Rather, perturbations in the function of ACD11 or related components could be monitored by R-proteins, which then mediate defense and programmed cell death (PCD), as proposed in the guard hypothesis (Probable). C1P transfer is stimulated by phosphatidylserine in C1P source vesicles (PubMed:28011644). Regulates autophagy, inflammasome mediated IL1B and IL18 processing, and pyroptosis, but not apoptosis (PubMed:28011644). {ECO:0000269|PubMed:11850411, ECO:0000269|PubMed:18657186, ECO:0000269|PubMed:24412362, ECO:0000269|PubMed:28011644, ECO:0000305|PubMed:18845362}. MISCELLANEOUS: The clustered Lys-64/Arg-99/Arg-103 residues form a positively charged triad ideally arranged for binding phosphate, explaining the inability to bind sugar headgroups and transfer glycoproteins. {ECO:0000269|PubMed:24412362}. 22680 Accelerated cell death 11 (Ceramide-1-phosphate transfer protein ACD11) (Glycolipid transfer protein domain-containing protein ACD11) cytoplasm [GO:0005737]; intermembrane lipid transfer activity [GO:0120013]; lipid binding [GO:0008289]; sphingosine transmembrane transporter activity [GO:0010175]; cell death [GO:0008219]; defense response to bacterium, incompatible interaction [GO:0009816]; response to salicylic acid [GO:0009751] locus:2061529; AT2G34690 Glycolipid transfer protein (GLTP) Expressed protein (Os03g0784900 protein) (cDNA clone:006-201-F05, full insert sequence) (cDNA clone:J023019M19, full insert sequence) Q10CF2 Q10CF2_ORYSJ Os03g0784900 LOC_Os03g57140 Os03g0784900 OsJ_12852 OSNPB_030784900 ENOG411DTTF PABN1,PABN2,PABN3 Q93VI4,Q9FJN9,Q9LX90,A0A1P8BBR0,F4KBV2,F4KBV3 PABN1_ARATH,PABN2_ARATH,PABN3_ARATH,A0A1P8BBR0_ARATH,F4KBV2_ARATH,F4KBV3_ARATH Polyadenylate-binding protein 1 (AtPabN1) (Poly(A)-binding protein 1) (Nuclear poly(A)-binding protein 1) (Poly(A)-binding protein I) (PABI),Polyadenylate-binding protein 2 (AtPabN2) (AtPabN3) (Poly(A)-binding protein 2) (Nuclear poly(A)-binding protein 2) (Poly(A)-binding protein II) (PABII),Polyadenylate-binding protein 3 (AtPabN2) (AtPabN3) (Poly(A)-binding protein 3) (Nuclear poly(A)-binding protein 3) (Poly(A)-binding protein III) (PABIII),RNA-binding (RRM/RBD/RNP motifs) family protein,Polyadenylate-binding protein 1 FUNCTION: Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation. {ECO:0000250|UniProtKB:Q7KNF2}. R-ATH-72163; 25671,25250,24804,11428,16248,30302 Polyadenylate-binding protein 1 (AtPabN1) (Poly(A)-binding protein 1) (Nuclear poly(A)-binding protein 1) (Poly(A)-binding protein I) (PABI),Polyadenylate-binding protein 2 (AtPabN2) (AtPabN3) (Poly(A)-binding protein 2) (Nuclear poly(A)-binding protein 2) (Poly(A)-binding protein II) (PABII),Polyadenylate-binding protein 3 (AtPabN2) (AtPabN3) (Poly(A)-binding protein 3) (Nuclear poly(A)-binding protein 3) (Poly(A)-binding protein III) (PABIII),RNA-binding (RRM/RBD/RNP motifs) family protein,Polyadenylate-binding protein 1 cytoplasm [GO:0005737]; nuclear speck [GO:0016607]; RNA binding [GO:0003723]; mRNA processing [GO:0006397],cytoplasm [GO:0005737]; nuclear speck [GO:0016607]; RNA binding [GO:0003723],nuclear speck [GO:0016607]; nucleus [GO:0005634]; vacuolar membrane [GO:0005774]; poly(A) binding [GO:0008143]; protein self-association [GO:0043621],RNA binding [GO:0003723],cytosol [GO:0005829]; integral component of membrane [GO:0016021]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143] locus:2171780;,locus:2142519;,locus:2176207; AT5G51120,AT5G65260,AT5G10350 Polyadenylate-binding protein Os02g0757900 protein (Putative poly(A) binding protein) (cDNA clone:J023081D16, full insert sequence),Os06g0219600 protein (Putative poly(A) binding protein II) (cDNA clone:001-011-A07, full insert sequence) (cDNA clone:J013118A14, full insert sequence),Os02g0757900 protein (Putative poly(A) binding protein) (cDNA clone:006-212-D06, full insert sequence) Q6Z7V3,Q67X81,Q6Z7V4 Q6Z7V3_ORYSJ,Q67X81_ORYSJ,Q6Z7V4_ORYSJ P0471A11.31-2 Os02g0757900 OSNPB_020757900,Os06g0219600 Os06g0219600 OsJ_20615 OSNPB_060219600 P0436F11.25,P0471A11.31-1 Os02g0757900 OsJ_08453 OSNPB_020757900 ENOG411DTTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase of plants and bacteria Os10g0491000 protein (Putative basic secretory protein) (Secretory protein, putative, expressed) (cDNA clone:001-030-F02, full insert sequence) (cDNA clone:J023122C23, full insert sequence),Os10g0490800 protein (Secretory protein, putative) Q9FWU4,Q7XD55 Q9FWU4_ORYSJ,Q7XD55_ORYSJ Os10g0491000 LOC_Os10g34930 Os10g0491000 OsJ_31987 OSJNBa0051D19.25 OSNPB_100491000,Os10g0490800 LOC_Os10g34910 Os10g0490800 OsJ_31985 OSNPB_100490800 ENOG411DTTH Q0V7S5 Q0V7S5_ARATH At3g44610 (Protein kinase superfamily protein) 50015 At3g44610 (Protein kinase superfamily protein) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556] locus:2098120; AT3G44610 S_TKc Os11g0150700 protein (Protein kinase domain containing protein, expressed) (Second messenger-dependent protein kinase, putative),Os12g0149700 protein (Fragment) Q53PY9,Q0IQ35 Q53PY9_ORYSJ,Q0IQ35_ORYSJ LOC_Os11g05320 Os11g0150700 OSNPB_110150700,Os12g0149700 Os12g0149700 OSNPB_120149700 ENOG411DTTI AAR3 Q9MBG8,A0A1I9LN05 Q9MBG8_ARATH,A0A1I9LN05_ARATH Defective in cullin neddylation protein FUNCTION: Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. {ECO:0000256|RuleBase:RU410713}. R-ATH-8951664; 34372,33635 Defective in cullin neddylation protein nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; cullin family protein binding [GO:0097602]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin-like protein binding [GO:0032182]; auxin-activated signaling pathway [GO:0009734]; positive regulation of ubiquitin-protein transferase activity [GO:0051443]; protein neddylation [GO:0045116] locus:2087022; AT3G28970 Pfam:DUF298 Defective in cullin neddylation protein Q7X6I9 Q7X6I9_ORYSJ P0011H09.140 P0519E12.101 Os07g0631000 OSNPB_070631000 FUNCTION: Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. {ECO:0000256|RuleBase:RU410713}. ENOG411DTTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain Os02g0467500 protein,Os01g0548000 protein (Fragment),Os04g0317000 protein,Os08g0555500 protein,Os08g0131600 protein,Os09g0290500 protein A0A0P0VIU3,A0A0P0V3U5,A0A0P0W8U1,A0A0P0XJC0,A0A0P0XBF6,A0A0P0XKR4 A0A0P0VIU3_ORYSJ,A0A0P0V3U5_ORYSJ,A0A0P0W8U1_ORYSJ,A0A0P0XJC0_ORYSJ,A0A0P0XBF6_ORYSJ,A0A0P0XKR4_ORYSJ Os02g0467500 OSNPB_020467500,Os01g0548000 OSNPB_010548000,Os04g0317000 OSNPB_040317000,Os08g0555500 OSNPB_080555500,Os08g0131600 OSNPB_080131600,Os09g0290500 OSNPB_090290500 ENOG411DTTN P93750,A0A1I9LLC5,A0A178VCR5 P93750_ARATH,A0A1I9LLC5_ARATH,A0A178VCR5_ARATH Uncharacterized protein At2g41960,Uncharacterized protein 137907,133548,133420 Uncharacterized protein At2g41960,Uncharacterized protein plasmodesma [GO:0009506]; histamine N-methyltransferase activity [GO:0046539]; methylation [GO:0032259] locus:2064568; AT2G41960,AT3G58050 NA Os03g0226600 protein (cDNA clone:J023007A11, full insert sequence),Os10g0105400 protein (Fragment),Os03g0226600 protein (Fragment),Os10g0105400 protein B7EG01,A0A0P0XRH5,A0A0P0VV14,A0A0P0XQX9,A0A0P0XQT9 B7EG01_ORYSJ,A0A0P0XRH5_ORYSJ,A0A0P0VV14_ORYSJ,A0A0P0XQX9_ORYSJ,A0A0P0XQT9_ORYSJ Os03g0226600 OSNPB_030226600,Os10g0105400 OSNPB_100105400 ENOG411DTT0 Q8LF75,A0A1I9LME7 Q8LF75_ARATH,A0A1I9LME7_ARATH Protein kinase superfamily protein (Putative receptor ser thr protein kinase),Protein kinase superfamily protein 43396,33856 Protein kinase superfamily protein (Putative receptor ser thr protein kinase),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2095334; AT3G09010 receptor-like serine threonine-protein kinase Os03g0264300 protein (Protein kinase domain containing protein, expressed) (Putative receptor ser/thr protein) Q84QB8 Q84QB8_ORYSJ OJ1012B02.3 Os03g0264300 LOC_Os03g15770 OSNPB_030264300 ENOG411DTT1 SDP1 Q9LZA6 SDP1_ARATH Triacylglycerol lipase SDP1 (EC 3.1.1.3) (Protein SUGAR-DEPENDENT 1) DISRUPTION PHENOTYPE: Not impaired in germination, but much slower rate of postgerminative growth. {ECO:0000269|PubMed:16473965}. The mutant is severely impaired in its ability to breakdown storage lipid. It has a much slower rate of postgerminative growth which can be rescued by providing sucrose to the mutant. In germinating seedlings triacylglycerol content in the mutant only declined 20% of that in the wild type and clusters of oil bodies are seen in the mutant at this stage of development. Seedling lethal without exogenous sucrose-P. Eastmond-2006 FUNCTION: Involved in the release of fatty acids from the oil body in germinating seedlings. Could hydrolyze triacylglycerols and diacylglycerols but not monoacylglycerols, phospholipids, galactolipids or cholesterol esters. {ECO:0000269|PubMed:16473965, ECO:0000269|PubMed:19136267}. MISCELLANEOUS: Transcript levels do not correlate positively with enzyme activity, suggesting a post-transcriptional regulation. ARA:AT5G04040-MONOMER;MetaCyc:AT5G04040-MONOMER; 3.1.1.3 92092 Triacylglycerol lipase SDP1 (EC 3.1.1.3) (Protein SUGAR-DEPENDENT 1) integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; triglyceride lipase activity [GO:0004806]; glycerol metabolic process [GO:0006071]; triglyceride catabolic process [GO:0019433] DEVELOPMENTAL STAGE: Transcript levels increase at the beginning of seed maturation and remain high until seed desiccation is completed. High levels early in seed imbibition, but decline as the seed germinates. {ECO:0000269|PubMed:16473965}. locus:2150645; AT5G04040 Triacylglycerol lipase Os01g0762000 protein (Fragment),Os03g0810900 protein (Patatin, putative, expressed) (Putative patatin-like phospholipase) (Putative phospholipase) (cDNA clone:J023108N19, full insert sequence),Os07g0499300 protein (Fragment) Q0JJ39,Q7XZH2,A0A0P0X6G3,A0A0P0V8I2 Q0JJ39_ORYSJ,Q7XZH2_ORYSJ,A0A0P0X6G3_ORYSJ,A0A0P0V8I2_ORYSJ Os01g0762000 Os01g0762000 OSNPB_010762000,OSJNBa0028F23.4 LOC_Os03g59620 Os03g0810900 OSJNBb0033J23.4 OSNPB_030810900,Os07g0499300 OSNPB_070499300,Os01g0762000 OSNPB_010762000 ENOG411DTT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Cell death associated protein (Os05g0410200 protein) Q6J657 Q6J657_ORYSJ Os05g0410200 OSNPB_050410200 P0668F02.3 ENOG411DTT3 MZN1.9 Q9STZ2,Q8W1E5,F4KGA7 SELT_ARATH,Q8W1E5_ARATH,F4KGA7_ARATH SelT-like protein,AT5g58640/mzn1_90 (Selenoprotein, Rdx type),Selenoprotein, Rdx type 22651,24998,24870 SelT-like protein,AT5g58640/mzn1_90 (Selenoprotein, Rdx type),Selenoprotein, Rdx type endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886] locus:2099540;,locus:2178873; AT3G47300,AT5G58640 SelT-like protein Os05g0467300 protein (cDNA clone:001-041-A06, full insert sequence),Os01g0832200 protein (cDNA clone:006-302-G02, full insert sequence),Os01g0832200 protein Q6I5I7,Q8S227,Q5QLD4 Q6I5I7_ORYSJ,Q8S227_ORYSJ,Q5QLD4_ORYSJ Os05g0467300 OJ1387_F08.14 OSJNBa0009E21.18 OSNPB_050467300,P0446G04.43-2 Os01g0832200 P0460C04.2-2 OSNPB_010832200,P0460C04.2-1 P0446G04.43-1 Os01g0832200 OSNPB_010832200 ENOG411DTT4 DJ1B,DJ1A Q9MAH3,Q9FPF0,A0A1P8AUR1 DJ1B_ARATH,DJ1A_ARATH,A0A1P8AUR1_ARATH Protein DJ-1 homolog B (AtDJ1B),Protein DJ-1 homolog A (AtDJ1A),Class I glutamine amidotransferase-like superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased susceptibility to oxidative stress-induced cell death and accelerated cell death in aging plants. {ECO:0000269|PubMed:20406884}. FUNCTION: May be involved in oxidative stress response. {ECO:0000250}.,FUNCTION: Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1. {ECO:0000269|PubMed:20406884}. 46991,41857,40362 Protein DJ-1 homolog B (AtDJ1B),Protein DJ-1 homolog A (AtDJ1A),Class I glutamine amidotransferase-like superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; glyoxalase III activity [GO:0019172],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; glyoxalase III activity [GO:0019172]; positive regulation of cellular response to oxidative stress [GO:1900409]; response to cadmium ion [GO:0046686],transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541] locus:2009650;,locus:2086295; AT1G53280,AT3G14990 monophosphate biosynthesis Os06g0531200 protein (Putative 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme),Os01g0217800 protein (cDNA clone:J023092A20, full insert sequence),Os06g0531200 protein (Fragment) Q5Z790,Q0JPK7,A0A0P0WXE9 Q5Z790_ORYSJ,Q0JPK7_ORYSJ,A0A0P0WXE9_ORYSJ Os06g0531200 Os06g0531200 OSNPB_060531200 P0410C01.31,Os01g0217800 Os01g0217800 OSNPB_010217800,Os06g0531200 OSNPB_060531200 ENOG411DTT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os08g0481000 protein (Pentatricopeptide (PPR) repeat-containing protein-like),Os08g0481000 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J033044E03, full insert sequence) Q6Z235,Q6Z236 Q6Z235_ORYSJ,Q6Z236_ORYSJ OSJNBb0092C08.13-2 Os08g0481000 OSNPB_080481000,Os08g0481000 Os08g0481000 OsJ_27695 OSJNBb0092C08.13-1 OSNPB_080481000 ENOG411DTT6 PBA1 Q8LD27,F4JRY2 PSB6_ARATH,F4JRY2_ARATH Proteasome subunit beta type-6 (EC 3.4.25.1) (20S proteasome beta subunit A-1) (Proteasome component D) (Proteasome subunit beta type-1),Proteasome subunit beta type (EC 3.4.25.1) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 25151,25280 Proteasome subunit beta type-6 (EC 3.4.25.1) (20S proteasome beta subunit A-1) (Proteasome component D) (Proteasome subunit beta type-1),Proteasome subunit beta type (EC 3.4.25.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603],cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex [GO:0005839]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; peptidase activity [GO:0008233]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603]; regulation of plant-type hypersensitive response [GO:0010363]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043] locus:2128111; AT4G31300 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Proteasome subunit beta type (EC 3.4.25.1) Q9LST9,Q5VPF1 Q9LST9_ORYSJ,Q5VPF1_ORYSJ OsPBA1 Os02g0770000 OJ1079_F11.26 OsJ_08530 OSNPB_020770000,Os06g0139900 OsJ_20062 OSJNBa0041F13.35 OSNPB_060139900 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. ENOG411DTT7 YUP8H12R.24 F4IDJ0 F4IDJ0_ARATH Binding protein 94890 Binding protein nucleus [GO:0005634]; chromatin binding [GO:0003682] locus:2207370; AT1G79150 nucleolar complex protein 3 Os06g0498500 protein (Putative Noc3p) (cDNA clone:J033145O08, full insert sequence) Q656B0 Q656B0_ORYSJ Os06g0498500 OsJ_21447 OSNPB_060498500 P0596H06.4 ENOG411DTT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA starch branching enzyme 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic (EC 2.4.1.18) (Q-enzyme) (Starch-branching enzyme),Os06g0726400 protein (Fragment) Q01401,A0A0P0X161,A0A0P0X168 GLGB_ORYSJ,A0A0P0X161_ORYSJ,A0A0P0X168_ORYSJ SBE1 RBE1 Os06g0726400 LOC_Os06g51084 P0017G10.8-1 P0017G10.8-2 P0548E04.28-1 P0548E04.28-2,Os06g0726400 OSNPB_060726400 FUNCTION: Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. MISCELLANEOUS: Isoform 2 lacks the putative transit peptide and may be a cytosolic isoform. ENOG411DTT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os01g0882400 protein (Fragment) A0A0P0VB74 A0A0P0VB74_ORYSJ Os01g0882400 OSNPB_010882400 ENOG411E4MH ZHD5 Q9FRL5 ZHD5_ARATH Zinc-finger homeodomain protein 5 (AtZHD5) (Homeobox protein 33) (AtHB-33) DISRUPTION PHENOTYPE: Increased resistance to abscisic acid (ABA) in the seed germination and primary root growth. {ECO:0000269|PubMed:21779177}. FUNCTION: Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. 33893 Zinc-finger homeodomain protein 5 (AtZHD5) (Homeobox protein 33) (AtHB-33) nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. locus:2025121; AT1G75240 AtHB33 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) NA NA NA NA NA NA NA ENOG411E4MI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion NA NA NA NA NA NA NA ENOG411E4MJ ELIP1 P93735 ELIP1_ARATH Early light-induced protein 1, chloroplastic DISRUPTION PHENOTYPE: Reduced greening during deetiolation in continuous high light, with a reduced ratio between chlorophylls a and especially at the highest irradiances. Slight reduction in the rate of chlorophyll accumulation during greening at moderate light intensities, and lower zeaxanthin accumulation in high light conditions. Normal sensitivity to photoinhibition and photooxidation. Impaired seed germination, especially in high light conditions and at warm to hot temperatures (greater than 22 degrees Celsius). {ECO:0000269|PubMed:16028115, ECO:0000269|PubMed:16778010, ECO:0000269|PubMed:21299564}. FUNCTION: Prevents excess accumulation of free chlorophyll by inhibiting the entire chlorophyll biosynthesis pathway (e.g. 5-aminolevulinate synthesis and Mg-protoporphyrin IX chelatase activity), and hence prevent photooxidative stress (By similarity). Probably involved in the integration of pigments into the mature light-harvesting pigment-protein complexes. Light-harvesting chlorophyll (LHC) a/b-binding protein required to ensure a high rate of chlorophyll accumulation during deetiolation in continuous high light. Involved in seed germination. May fulfill a photoprotective functions. {ECO:0000250, ECO:0000269|PubMed:12676998, ECO:0000269|PubMed:16028115, ECO:0000269|PubMed:16778010, ECO:0000269|PubMed:21299564}. 20325 Early light-induced protein 1, chloroplastic chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; substrate-specific transmembrane transporter activity [GO:0022891]; cellular response to blue light [GO:0071483]; cellular response to far red light [GO:0071490]; cellular response to heat [GO:0034605]; cellular response to high light intensity [GO:0071486]; cellular response to red light [GO:0071491]; cellular response to UV-A [GO:0071492]; photoprotection [GO:0010117]; photosynthesis [GO:0015979]; positive regulation of seed germination [GO:0010030]; regulation of chlorophyll biosynthetic process [GO:0010380]; response to cold [GO:0009409]; response to karrikin [GO:0080167]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Appears transiently during greening of etiolated seedlings and disappears before chloroplast development is completed. {ECO:0000269|PubMed:16028115}. locus:2094354; AT3G22840 early light-induced protein Os01g0246400 protein (Putative early light-induced protein) (Putative low molecular early light-inducible protein) (cDNA clone:001-109-E06, full insert sequence) Q9XHY5 Q9XHY5_ORYSJ OSJNBa0049B20.7 Os01g0246400 OsJ_01089 OSJNBa0004G10.20 OSNPB_010246400 ENOG411E4MK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411E4MM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411E4MN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0130700 protein A0A0P0XK36 A0A0P0XK36_ORYSJ Os09g0130700 OSNPB_090130700 ENOG411E4MA NPF5.5 O80436,A0A1P8B1I6,A0A1P8B1J5 PTR29_ARATH,A0A1P8B1I6_ARATH,A0A1P8B1J5_ARATH Protein NRT1/ PTR FAMILY 5.5 (AtNPF5.5),Proton-dependent oligopeptide transport (POT) family protein 57843,58543,55915 Protein NRT1/ PTR FAMILY 5.5 (AtNPF5.5),Proton-dependent oligopeptide transport (POT) family protein integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:17481610}. locus:2042937; AT2G38100 Proton-dependent oligopeptide NA NA NA NA NA NA NA ENOG411E4MB WUS Q9SB92 WUS_ARATH Protein WUSCHEL (AtWUS) (Plant growth activator 6) Whereas carpels were completely absent in wus-1 flowers and only 1.6 stamens (compared to 6 in wild type) developed in the third floral whorl all trn2-23010 wus-1 flowers developed 2 carpels which in contrast to trn2-23010 single mutants were seldom open (33%) and more usually fused. Consistent with the increased number of stamens (4.2 on average) in the third floral whorl the trn2 mutation may compensate for a premature consumption of stem cells in wus-1 flowers. In contrast the number of sepals and petals in the outer perianth whorls in trn2-23010 wus-1 was closer in number to that of the trn2 mutant rather than to wus-1 single mutant flowers.,Anthers have less smaller or malformed lobes in comparison to wild type and do not open. Cells in the stomium region and the neighboring septum cells do not undergo cell wall thickening and degeneration as in wild type. Complete loss of primary inflorescence growth; Disorganized bunches of rosette leaves; Complete loss of carpels; Single, central stamen-T. Laux-1998 FUNCTION: Transcription factor that plays a central role during early embryogenesis, oogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity. Involved in the developmental root meristem. In shoot apices, it is sufficient to induce the expression of CLV3, a putative ligand of the CLV signaling pathway. Also required to sustain organogenesis in the floral meristem by contributing to the expression of its own repressor, the AGAMOUS (AG) gene at the end of flower development. Binds directly to the 5'-TTAAT[GC][GC]-3' DNA sequence in the regulatory sequence of AG and activates its expression directly. Regulates one important step in ovule development to induce integument formation from the underlying chalazal domain. Participates in the promotion of vegetative to embryonic transition. Required to repress LEC1 expression. {ECO:0000269|PubMed:10761929, ECO:0000269|PubMed:11440721, ECO:0000269|PubMed:11440722, ECO:0000269|PubMed:12000682, ECO:0000269|PubMed:12000795, ECO:0000269|PubMed:12068101, ECO:0000269|PubMed:12070094, ECO:0000269|PubMed:12070095, ECO:0000269|PubMed:15004006, ECO:0000269|PubMed:9865698}. 33190 Protein WUSCHEL (AtWUS) (Plant growth activator 6) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; cell differentiation [GO:0030154]; regulation of transcription, DNA-templated [GO:0006355]; stem cell population maintenance [GO:0019827]; stomium development [GO:0080166]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed from 16 cell embryo stage, long before shoot meristem is evident, and gradually become restricted to the center of shoot meristem primordium. {ECO:0000269|PubMed:9865698}. TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. Also expressed in the floral meristem. Expressed in the nucellus of ovule primordia. {ECO:0000269|PubMed:12000795, ECO:0000269|PubMed:9865698}. locus:2060902; AT2G17950 DNA binding protein binding transcription factor transcription regulator WUSCHEL-related homeobox 1B (OsWOX1B) (OsWUS),WUSCHEL-related homeobox 1A (OsWOX1A) (OsWOX1) (Protein WUS),Os04g0663600 protein Q33DK0,Q7XM13,A0A0N7KJV6 WOX1B_ORYSJ,WOX1A_ORYSJ,A0A0N7KJV6_ORYSJ WOX1B Os04g0663600 LOC_Os04g56780 OsJ_015793,WOX1A WOX1 WUS Os04g0663600 LOC_Os04g56780 OSJNBa0084K01.1,Os04g0663600 OSNPB_040663600 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411E4MC Q8W576 Q8W576_ARATH 1,3-beta-glucan synthase component (DUF1218) (At1g61067/At1g61067) 19865 1,3-beta-glucan synthase component (DUF1218) (At1g61067/At1g61067) integral component of membrane [GO:0016021] locus:505006194; AT1G61065 Protein of unknown function (DUF1218) NA NA NA NA NA NA NA ENOG411E4MD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial inner membrane protease subunit NA NA NA NA NA NA NA ENOG411E4ME BHLH57 Q9M128 BH057_ARATH Transcription factor bHLH57 (Basic helix-loop-helix protein 57) (AtbHLH57) (bHLH 57) (Transcription factor EN 12) (bHLH transcription factor bHLH057) 35307 Transcription factor bHLH57 (Basic helix-loop-helix protein 57) (AtbHLH57) (bHLH 57) (Transcription factor EN 12) (bHLH transcription factor bHLH057) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2116977; AT4G01460 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E4MF Q94JQ7 Q94JQ7_ARATH At1g07830/F24B9_7 (Ribosomal protein L29 family protein) 16887 At1g07830/F24B9_7 (Ribosomal protein L29 family protein) mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543] locus:2026550; AT1G07830 ribosomal protein Os06g0128500 protein (Ribosomal protein L29 protein-like) (cDNA clone:001-017-D12, full insert sequence) (cDNA clone:J033133F04, full insert sequence) Q658I1 Q658I1_ORYSJ Os06g0128500 OSNPB_060128500 P0538C01.7 ENOG411E4MG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0177400 protein Q6ETN5 Q6ETN5_ORYSJ Os02g0177400 OSNPB_020177400 P0504A05.21 ENOG411E4MY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Nuclear transcription factor Y subunit B-11 (OsNF-YB11) (Protein DAYS TO HEADING 8) (Protein HEADING DATE 5) (Transcriptional activator HAP3H) (OsHAP3H),Os08g0174500 protein Q0J7P4,A0A0P0XCC4 HD5_ORYSJ,A0A0P0XCC4_ORYSJ HD5 DTH8 GHD8 HAP3H NFYB11 Os08g0174500 LOC_Os08g07740,Os08g0174500 OSNPB_080174500 DISRUPTION PHENOTYPE: Early flowering phenotype under long day (LD) and natural day (ND) conditions. Decreased plant size, number of grains per panicle, yield and dry weight per plant. {ECO:0000269|PubMed:20566706, ECO:0000269|PubMed:21148627}. FUNCTION: Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:20566706, PubMed:21148627). Regulates plant height by promoting cell elongation in the internodes (PubMed:20566706). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:20566706, ECO:0000269|PubMed:21148627}. ENOG411E4MZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0619500 protein Q6K938 Q6K938_ORYSJ Os02g0619500 OJ1212_C01.32 OJ1372_D06.15 OSNPB_020619500 ENOG411E4MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0524000 protein Q0IW97 Q0IW97_ORYSJ Os10g0524000 OSNPB_100524000 ENOG411E4MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2Fe-2S iron-sulfur cluster binding domain NA NA NA NA NA NA NA ENOG411E4MR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VIT family NA NA NA NA NA NA NA ENOG411E4MS LBD21 Q9SRL8 LBD21_ARATH LOB domain-containing protein 21 (ASYMMETRIC LEAVES 2-like protein 12) (AS2-like protein 12) 18160 LOB domain-containing protein 21 (ASYMMETRIC LEAVES 2-like protein 12) (AS2-like protein 12) locus:2074648; AT3G11090 lob domain-containing protein NA NA NA NA NA NA NA ENOG411E4MU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein (Fragment) Q0IZZ4 Q0IZZ4_ORYSJ Os09g0539800 Os09g0539800 OSNPB_090539800 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E4MV Q6NNI6,A0A1P8B4M5 Q6NNI6_ARATH,A0A1P8B4M5_ARATH At4g17810 (C2H2 and C2HC zinc fingers superfamily protein),C2H2 and C2HC zinc fingers superfamily protein 22281,19020 At4g17810 (C2H2 and C2HC zinc fingers superfamily protein),C2H2 and C2HC zinc fingers superfamily protein nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],nucleic acid binding [GO:0003676] locus:2129495; AT4G17810 Transcription factor Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From Arabidopsis Thaliana Superman Protein (Os11g0707300 protein) (Zinc finger, C2H2 type family protein, expressed) Q53NV6 Q53NV6_ORYSJ LOC_Os11g48000 Os11g0707300 OsJ_34883 OSNPB_110707300 ENOG411E4MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0729600 protein) (cDNA clone:001-110-B11, full insert sequence) Q851F3 Q851F3_ORYSJ Os03g0729600 LOC_Os03g51980 Os03g0729600 OSJNBb0011H13.9 OSNPB_030729600 ENOG411E4M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fibronectin type III domain NA NA NA NA NA NA NA ENOG411E4M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG NA NA NA NA NA NA NA ENOG411E4M1 ESR1 Q9SAD4 ESR1_ARATH Ethylene-responsive transcription factor ESR1 (Protein DORNROSCHEN) (Protein ENHANCER OF SHOOT REGENERATION 1) Abnormal cell division observable from the globular embryo stage onwards. Approximately half of homozygous drn-1 embryos show abnormal development in the hypophysis region or no obvious distinction between embryo proper and suspensor.,Defective cotyledon development phenotypes at incomplete penetrance including monocotyledonous seedlings seedlings with partially fused cotyledons tricots or various tricot fusion combinations. The inappropriate cotyledon development leads to alterations of leaf phyllotaxy.,Defects in embryonic cell patterning in essentially all double mutants. Pleotropic cotyledon phenotypes. Large increase in phenotypic penetrance.,A quarter of drn-1 drnl-2/DRNL-2 progeny genotyped as double-homozygous mutants had pin-like embryos with complete absence of cotyledons. They directly initiated leaves from a functional shoot apical meristem.,sterile Incomplete penetrance of cotyledon defects: Fused and cup-shaped cotyledons, increased cotyledon number; Abnormal embryonic cell patterning-W. Werr-2007 FUNCTION: Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. MISCELLANEOUS: 'Dornroeschen' means 'Sleeping beauty' in German. 36319 Ethylene-responsive transcription factor ESR1 (Protein DORNROSCHEN) (Protein ENHANCER OF SHOOT REGENERATION 1) cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; embryonic pattern specification [GO:0009880]; ethylene-activated signaling pathway [GO:0009873]; plant organ morphogenesis [GO:1905392]; response to cytokinin [GO:0009735]; specification of plant organ axis polarity [GO:0090708]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First observed in the embryo at four-cell stage. At the globular stage, localized in cotyledons primordia. Later confined to embryonic cotyledons tips. Expressed from embryogenesis onward in the central zone of the shoot apical and floral meristems, in organ anlagen, and (transiently) in the distal domains of organ primordia. {ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. TISSUE SPECIFICITY: Expressed in shoot apical and floral meristems, and in organ primordia. Transient expression during shoot regeneration. {ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. locus:2031890; AT1G12980 Transcription factor NA NA NA NA NA NA NA ENOG411E4M2 Q9LZD5 Q9LZD5_ARATH C2H2-type zinc finger family protein (Uncharacterized protein At5g03510) (Uncharacterized protein F12E4_290) 31529 C2H2-type zinc finger family protein (Uncharacterized protein At5g03510) (Uncharacterized protein F12E4_290) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2142674; AT5G03510 zinc finger Os04g0162500 protein (Fragment) Q0JF47 Q0JF47_ORYSJ Os04g0162500 Os04g0162500 OSNPB_040162500 ENOG411E4M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0006M15.15 protein (Os04g0455700 protein) Q7XRF2 Q7XRF2_ORYSJ Os04g0455700 OSJNBa0006M15.15 OSNPB_040455700 ENOG411E4M4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-binding protein ESCAROLA-like DNA-binding protein-like (Os02g0713700 protein) (cDNA, clone: J065121M03, full insert sequence) Q6ZFU2 Q6ZFU2_ORYSJ Os02g0713700 OJ1479_B12.16 OSNPB_020713700 ENOG411E4M6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os09g0545500 protein A3C156 A3C156_ORYSJ Os09g0545500 OsJ_30205 OSNPB_090545500 ENOG411E4M7 F4HVM4 F4HVM4_ARATH RING/U-box superfamily protein 27419 RING/U-box superfamily protein zinc ion binding [GO:0008270] locus:2199272; AT1G68180 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411ECBA REM23,VDD Q9LXE1,F4KIX1,Q9FJG2,Q9FK61,A0A1P8BA45 REM23_ARATH,Y5691_ARATH,Y5800_ARATH,Y5809_ARATH,A0A1P8BA45_ARATH B3 domain-containing protein REM23 (Protein REPRODUCTIVE MERISTEM 23),Putative B3 domain-containing protein At5g46915,B3 domain-containing protein At5g18000,B3 domain-containing protein At5g18090,VERDANDI Female gametophyte defective; Embryo defective-L. Colombo-2010 35623,32815,35727,34675,31441 B3 domain-containing protein REM23 (Protein REPRODUCTIVE MERISTEM 23),Putative B3 domain-containing protein At5g46915,B3 domain-containing protein At5g18000,B3 domain-containing protein At5g18090,VERDANDI nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; double fertilization forming a zygote and endosperm [GO:0009567]; embryo sac development [GO:0009553]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2144831;,locus:504954883;,locus:2161533;,locus:2172319; AT5G09780,AT5G46915,AT5G18000,AT5G18090 B3 NA NA NA NA NA NA NA ENOG411ECBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411ECBH PHL4 Q8GXC2,A0A1P8AYE3 PHL4_ARATH,A0A1P8AYE3_ARATH Myb family transcription factor PHL4 (Protein PHR1-LIKE 4),Myb-like HTH transcriptional regulator family protein DISRUPTION PHENOTYPE: Separated male germ unit (MGU) with all nuclei separated from each other making a wide triangular figure. {ECO:0000269|PubMed:22101548}. FUNCTION: Transcription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}. 44112,44183 Myb family transcription factor PHL4 (Protein PHR1-LIKE 4),Myb-like HTH transcriptional regulator family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2038957; AT2G20400 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411ECBI MIK19.27 Q9FJV2,Q9FJV1,Q9FJT3 FBD27_ARATH,FDL39_ARATH,Q9FJT3_ARATH Putative FBD-associated F-box protein At5g56560,F-box/FBD/LRR-repeat protein At5g56570,Emb|CAB62440.1 (Protein with RNI-like/FBD-like domain) 47638,50457,39680 Putative FBD-associated F-box protein At5g56560,F-box/FBD/LRR-repeat protein At5g56570,Emb|CAB62440.1 (Protein with RNI-like/FBD-like domain) locus:2164971;,locus:2165056; AT5G56560,AT5G56570,AT5G56800 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EEE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECB7 ACS5,ACS9,ACS8 Q37001,Q9M2Y8,Q9T065 1A15_ARATH,1A19_ARATH,1A18_ARATH 1-aminocyclopropane-1-carboxylate synthase 5 (ACC synthase 5) (EC 4.4.1.14) (Ethylene-overproduction protein 2) (S-adenosyl-L-methionine methylthioadenosine-lyase 5),1-aminocyclopropane-1-carboxylate synthase 9 (ACC synthase 9) (EC 4.4.1.14) (Ethylene-overproduction protein 3) (S-adenosyl-L-methionine methylthioadenosine-lyase 9),1-aminocyclopropane-1-carboxylate synthase 8 (ACC synthase 8) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 8) Tall inflorescence stems; Long hypocotyl; Large cotyledons; Low ethylene levels in response to cytokinin-J. Kieber-1998,Tall inflorescence stems; Large cotyledons; Long hypocotyl; Early flowering; Enhanced ethylene production-A. Theologis-2009 FUNCTION: 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. MISCELLANEOUS: The stability of ACS proteins, and the regulation of such stability, play a central role in ethylene biosynthesis. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 1/2. 4.4.1.14; 4.4.1.14 53313,53170,53371 1-aminocyclopropane-1-carboxylate synthase 5 (ACC synthase 5) (EC 4.4.1.14) (Ethylene-overproduction protein 2) (S-adenosyl-L-methionine methylthioadenosine-lyase 5),1-aminocyclopropane-1-carboxylate synthase 9 (ACC synthase 9) (EC 4.4.1.14) (Ethylene-overproduction protein 3) (S-adenosyl-L-methionine methylthioadenosine-lyase 9),1-aminocyclopropane-1-carboxylate synthase 8 (ACC synthase 8) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 8) 1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; pyridoxal phosphate binding [GO:0030170]; cell division [GO:0051301]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835]; response to cytokinin [GO:0009735]; vasculature development [GO:0001944],1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; pyridoxal phosphate binding [GO:0030170]; cellular response to iron ion [GO:0071281]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835]; regulation of translation [GO:0006417],1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; identical protein binding [GO:0042802]; pyridoxal phosphate binding [GO:0030170]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835] TISSUE SPECIFICITY: Expressed in roots and siliques. {ECO:0000269|PubMed:12968022}.,TISSUE SPECIFICITY: Expressed in roots. Expressed at low level in flowers and siliques. {ECO:0000269|PubMed:12968022}. locus:2169980;,locus:2097350;,locus:2137579; AT5G65800,AT3G49700,AT4G37770 Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411ECB4 Q9ZPR2,Q8GW56,F4IT98 Q9ZPR2_ARATH,Q8GW56_ARATH,F4IT98_ARATH Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein (Uncharacterized protein At2g03640),At2g03640 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Uncharacterized protein At2g03640/F19B11.9),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein 46202,46131,49606 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein (Uncharacterized protein At2g03640),At2g03640 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Uncharacterized protein At2g03640/F19B11.9),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein intracellular [GO:0005622]; RNA binding [GO:0003723]; transport [GO:0006810],intracellular [GO:0005622]; mRNA binding [GO:0003729]; transport [GO:0006810] locus:2044284; AT2G03640 Nuclear transport factor 2 (NTF2) domain NA NA NA NA NA NA NA ENOG411ECB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-arabinono-14-lactone oxidase NA NA NA NA NA NA NA ENOG411ECB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411ECB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411ECB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411DZF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0693300 protein,Os11g0689650 protein (Fragment),Os11g0689500 protein A0A0P0Y5G6,A0A0P0Y5F4,A0A0P0Y5J3 A0A0P0Y5G6_ORYSJ,A0A0P0Y5F4_ORYSJ,A0A0P0Y5J3_ORYSJ Os11g0693300 OSNPB_110693300,Os11g0689650 OSNPB_110689650,Os11g0689500 OSNPB_110689500 ENOG411DZF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of Os05g0130400 protein,Os08g0538100 protein (Os08g0538200 protein),Os01g0319200 protein,Os01g0319400 protein (Fragment),Os01g0564950 protein (Fragment),Os10g0166900 protein Q65XU3,C7J661,A0A0P0V1U0,A0A0P0V1T4,A0A0P0V462,A0A0P0XSG4 Q65XU3_ORYSJ,C7J661_ORYSJ,A0A0P0V1U0_ORYSJ,A0A0P0V1T4_ORYSJ,A0A0P0V462_ORYSJ,A0A0P0XSG4_ORYSJ Os05g0130400 Os05g0130400 OSNPB_050130400 P0033D06.4,Os08g0538200 Os08g0538100 OSNPB_080538200,Os01g0319200 OSNPB_010319200,Os01g0319400 OSNPB_010319400,Os01g0564950 OSNPB_010564950,Os10g0166900 OSNPB_100166900 ENOG411DZF6 ASK1,ASK3 P43288,P43289 KSG1_ARATH,KSG3_ARATH Shaggy-related protein kinase alpha (EC 2.7.11.1) (ASK-alpha) (Shaggy-related protein kinase 11) (AtSK11),Shaggy-related protein kinase gamma (EC 2.7.11.1) (ASK-gamma) (Shaggy-related protein kinase 12) (AtSK12) FUNCTION: May mediate extracellular signals to regulate transcription in differentiating cells. R-ATH-3371453; 2.7.11.26; 2.7.11.1 46035,46587 Shaggy-related protein kinase alpha (EC 2.7.11.1) (ASK-alpha) (Shaggy-related protein kinase 11) (AtSK11),Shaggy-related protein kinase gamma (EC 2.7.11.1) (ASK-gamma) (Shaggy-related protein kinase 12) (AtSK12) cytosol [GO:0005829]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; hyperosmotic salinity response [GO:0042538]; meristem structural organization [GO:0009933]; positive regulation of response to salt stress [GO:1901002]; response to salt stress [GO:0009651],cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; meristem structural organization [GO:0009933]; protein autophosphorylation [GO:0046777] TISSUE SPECIFICITY: Roots, shoots and leaves. locus:2832141;,locus:2074464; AT5G26751,AT3G05840 S_TKc Os05g0134000 protein (Putative glycogen synthase kinase) (cDNA clone:001-013-C05, full insert sequence),Os01g0252100 protein (cDNA clone:J013091C23, full insert sequence),Os05g0134000 protein Q6AW02,Q9LIS6,A0A0P0WHL9 Q6AW02_ORYSJ,Q9LIS6_ORYSJ,A0A0P0WHL9_ORYSJ Os05g0134000 Os05g0134000 OsJ_17017 OSNPB_050134000 P0519E07.1,P0434D08.32-1 Os01g0252100 OsJ_01119 OSNPB_010252100,Os05g0134000 OSNPB_050134000 ENOG411DZF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os09g0448150 protein,Os01g0170500 protein (Putative ZmEBE-1 protein),Os11g0703750 protein B9G3X6,Q5VQM6,A0A0P0Y660 B9G3X6_ORYSJ,Q5VQM6_ORYSJ,A0A0P0Y660_ORYSJ Os09g0448150 OsJ_29573 OSNPB_090448150,Os01g0170500 Os01g0170500 OSNPB_010170500 P0583G08.10,Os11g0703750 OSNPB_110703750 ENOG411DZF1 T12P18.20 Q9S826 Q9S826_ARATH Putative U3 small nucleolar ribonucleoprotein (Putative U3 small nucleolar ribonucleoprotein protein) (Putative U3 small nucleolar ribonucleoprotein protein; 1537-3735) (Putative U3 small nucleolar ribonucleoprotein protein; 73469-75667) (Ribosomal RNA processing Brix domain protein) R-ATH-6791226; 34106 Putative U3 small nucleolar ribonucleoprotein (Putative U3 small nucleolar ribonucleoprotein protein) (Putative U3 small nucleolar ribonucleoprotein protein; 1537-3735) (Putative U3 small nucleolar ribonucleoprotein protein; 73469-75667) (Ribosomal RNA processing Brix domain protein) Cajal body [GO:0015030]; Mpp10 complex [GO:0034457]; nuclear matrix [GO:0016363]; nucleolus [GO:0005730]; small nucleolar ribonucleoprotein complex [GO:0005732]; small-subunit processome [GO:0032040]; viral nucleocapsid [GO:0019013]; rRNA primary transcript binding [GO:0042134]; snoRNA binding [GO:0030515]; rRNA processing [GO:0006364] locus:2026689; AT1G63780 U3 small nucleolar ribonucleoprotein protein Os08g0155000 protein (Putative U3 snoRNP protein IMP4) (cDNA clone:001-034-F07, full insert sequence),Os08g0155000 protein (Putative U3 snoRNP protein IMP4) Q6ZJR6,Q6ZJR7 Q6ZJR6_ORYSJ,Q6ZJR7_ORYSJ Os08g0155000 OJ1177_E11.4-2 OSNPB_080155000,Os08g0155000 Os08g0155000 OJ1177_E11.4-1 OSNPB_080155000 ENOG411DZF2 matK P56784 MATK_ARATH Maturase K (Intron maturase) FUNCTION: Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. {ECO:0000255|HAMAP-Rule:MF_01390}. 60366 Maturase K (Intron maturase) chloroplast [GO:0009507]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; tRNA processing [GO:0008033] ATCG00040 Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns (By similarity) Maturase K (Intron maturase),Os11g0517350 protein (Fragment) P0C383,A0A0P0Y2N0 MATK_ORYSJ,A0A0P0Y2N0_ORYSJ matK ycf14,Os11g0517350 OSNPB_110517350 FUNCTION: Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. {ECO:0000255|HAMAP-Rule:MF_01390}. ENOG411DZF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF641) Expressed protein (Os12g0113900 protein) (cDNA clone:J033099G18, full insert sequence),Expressed protein (Os11g0114000 protein) (Os11g0114150 protein) (cDNA, clone: J065119C11, full insert sequence) Q2QYM0,Q2RBE7 Q2QYM0_ORYSJ,Q2RBE7_ORYSJ Os12g0113900 LOC_Os12g02230 Os12g0113900 OsJ_35044 OSNPB_120113900,Os11g0114150 LOC_Os11g02270 Os11g0114000 OSNPB_110114150 ENOG411DZF8 Q8H1F8,A0A1P8AN02 Q8H1F8_ARATH,A0A1P8AN02_ARATH DNA-directed RNA polymerase (Uncharacterized protein At1g75670),DNA-directed RNA polymerase 22286,17769 DNA-directed RNA polymerase (Uncharacterized protein At1g75670),DNA-directed RNA polymerase DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase I promoter [GO:0006360],DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] locus:2005729; AT1G75670 RNA Polymerase Os06g0168400 protein (RNA polymerase Rpa43 subunit-like) (cDNA clone:002-148-H10, full insert sequence),Os12g0533600 protein Q5VRF7,B9GDH8 Q5VRF7_ORYSJ,B9GDH8_ORYSJ Os06g0168400 Os06g0168400 OSJNBa0033B09.16 OSNPB_060168400 P0680A03.37,Os12g0533600 OsJ_36345 OSNPB_120533600 ENOG411DZF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os03g0231950 protein A0A0P0VV20 A0A0P0VV20_ORYSJ Os03g0231950 OSNPB_030231950 ENOG411DZFT BCA2,BCA1,CA2,CA1 P42737,P27140,F4K873,A0A1I9LQB3,F4K875,A8MQY4 BCA2_ARATH,BCA1_ARATH,F4K873_ARATH,A0A1I9LQB3_ARATH,F4K875_ARATH,A8MQY4_ARATH Beta carbonic anhydrase 2, chloroplastic (AtbCA2) (AtbetaCA2) (EC 4.2.1.1) (Beta carbonate dehydratase 2),Beta carbonic anhydrase 1, chloroplastic (AtbCA1) (AtbetaCA1) (EC 4.2.1.1) (Beta carbonate dehydratase 1) (Protein SALICYLIC ACID-BINDING PROTEIN 3) (AtSABP3),Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) DISRUPTION PHENOTYPE: Reduced levels of seedling establishment associated with altered cotyledon photosynthetic performance at the onset of phototrophic growth and prior to the development of true leaves. These phenotypes are reversed in high CO(2) or sucrose supplemented conditions. Decreased resistance against avirulent bacteria. In plants lacking both BCA1 and BCA4, impaired CO(2)-regulation of stomatal movements associated with reduced beta carbonic anhydrase activity in guard cells, and increased stomatal density. {ECO:0000269|PubMed:18434607, ECO:0000269|PubMed:19017644, ECO:0000269|PubMed:20010812}. FUNCTION: Reversible hydration of carbon dioxide. This isoform ensures the supply of bicarbonate for pep carboxylase.,FUNCTION: Reversible hydration of carbon dioxide. Required for photosynthesis in cotyledons. Binds salicylic acid. Together with BCA4, involved in the CO(2) signaling pathway which controls gas-exchange between plants and the atmosphere by modulating stomatal development and movements. Promotes water use efficiency. {ECO:0000269|PubMed:18434607, ECO:0000269|PubMed:19017644, ECO:0000269|PubMed:20010812, ECO:0000269|PubMed:25043023}.,FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000256|RuleBase:RU003956}. PATHWAY: Photosynthesis; C4 acid pathway. ARA:AT3G01500-MONOMER;MetaCyc:AT3G01500-MONOMER; 4.2.1.1 36615,37450,36528,28198,36486,34426 Beta carbonic anhydrase 2, chloroplastic (AtbCA2) (AtbetaCA2) (EC 4.2.1.1) (Beta carbonate dehydratase 2),Beta carbonic anhydrase 1, chloroplastic (AtbCA1) (AtbetaCA1) (EC 4.2.1.1) (Beta carbonate dehydratase 1) (Protein SALICYLIC ACID-BINDING PROTEIN 3) (AtSABP3),Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976]; defense response to bacterium [GO:0042742],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; plasma membrane [GO:0005886]; stromule [GO:0010319]; thylakoid [GO:0009579]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; negative regulation of stomatal complex development [GO:2000122]; photosynthesis [GO:0015979]; regulation of stomatal movement [GO:0010119]; response to carbon dioxide [GO:0010037]; response to cold [GO:0009409],carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976] TISSUE SPECIFICITY: Strongly expressed in aerial tissues including leaves, stems, flowers and siliques. Accumulates in mesophyll cells. {ECO:0000269|PubMed:17407539, ECO:0000269|PubMed:20010812}.,TISSUE SPECIFICITY: Strongly expressed in aerial tissues including leaves, stems, flowers and siliques. Accumulates in both guard cells and mesophyll cells. {ECO:0000269|PubMed:17407539, ECO:0000269|PubMed:20010812}. locus:2185460;,locus:2084198; AT5G14740,AT3G01500 carbonic anhydrase Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) Q7F2G3 Q7F2G3_ORYSJ Os01g0639900 OsJ_02775 OSNPB_010639900 P0004A09.36 FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000256|RuleBase:RU003956}. ENOG411DZFU TPR4,WSIP2 Q27GK7,F4J043 TPR4_ARATH,F4J043_ARATH Topless-related protein 4 (WUS-interacting protein 2),WUS-interacting protein 2 FUNCTION: Transcriptional corepressor. Negative regulator of jasmonate responses (By similarity). {ECO:0000250}. 124104,122926 Topless-related protein 4 (WUS-interacting protein 2),WUS-interacting protein 2 nucleus [GO:0005634]; primary shoot apical meristem specification [GO:0010072]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2093222; AT3G15880 topless-related protein 4-like NA NA NA NA NA NA NA ENOG411DZFV F4K390,F4K389 F4K390_ARATH,F4K389_ARATH Phosphoglycolate phosphatase 57692,57037 Phosphoglycolate phosphatase integral component of membrane [GO:0016021] locus:2156554; AT5G48830 Protein of unknown function (DUF3685) Os02g0515000 protein A0A0P0VJH5,A0A0N7KFD2 A0A0P0VJH5_ORYSJ,A0A0N7KFD2_ORYSJ Os02g0515000 OSNPB_020515000 ENOG411DZFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ras family Os05g0341600 protein (cDNA clone:002-182-B11, full insert sequence) Q5WMU2 Q5WMU2_ORYSJ Os05g0341600 OJ1116_F05.1 OsJ_18122 OSNPB_050341600 ENOG411DZFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0667000 protein (Protein kinase domain containing protein, expressed),Os11g0667100 protein,Os11g0666200 protein (Protein kinase domain containing protein, expressed),Os11g0664000 protein (Protein kinase domain containing protein),Cytokinin-regulated kinase-like (Os06g0151700 protein),Os11g0666100 protein (Fragment),Os11g0666300 protein (Fragment),Os11g0663900 protein (Fragment),Os11g0665950 protein (Fragment),Os12g0499700 protein,Os11g0667550 protein,Os11g0667600 protein,Os11g0664133 protein,Os11g0664100 protein,Os11g0665800 protein Q2QZX6,B9G8R9,Q2QZY3,Q2R001,Q5VMJ7,A0A0N7KTB7,A0A0P0Y551,A0A0P0Y5B5,A0A0P0Y533,A0A0P0YAC0,A0A0P0Y5A2,A0A0N7KTB8,A0A0P0Y568,A0A0P0Y5E3,A0A0P0Y534 Q2QZX6_ORYSJ,B9G8R9_ORYSJ,Q2QZY3_ORYSJ,Q2R001_ORYSJ,Q5VMJ7_ORYSJ,A0A0N7KTB7_ORYSJ,A0A0P0Y551_ORYSJ,A0A0P0Y5B5_ORYSJ,A0A0P0Y533_ORYSJ,A0A0P0YAC0_ORYSJ,A0A0P0Y5A2_ORYSJ,A0A0N7KTB8_ORYSJ,A0A0P0Y568_ORYSJ,A0A0P0Y5E3_ORYSJ,A0A0P0Y534_ORYSJ Os11g0667000 LOC_Os11g44500 OSNPB_110667000,Os11g0667100 OsJ_34757 OSNPB_110667100,Os11g0666200 LOC_Os11g44430 Os11g0666200 OsJ_34761 OSNPB_110666200,Os11g0664000 LOC_Os11g44250 OsJ_34746 OSNPB_110664000,Os06g0151700 Os06g0151700 OsJ_20148 OSNPB_060151700 P0529C07.26 P0710H01.38,Os11g0666100 OSNPB_110666100,Os11g0666300 OSNPB_110666300,Os11g0663900 OSNPB_110663900,Os11g0665950 OSNPB_110665950,Os12g0499700 OSNPB_120499700,Os11g0667550 OSNPB_110667550,Os11g0667600 OSNPB_110667600,Os11g0664133 OSNPB_110664133,Os11g0664100 OSNPB_110664100,Os11g0665800 OSNPB_110665800 ENOG411DZFS A4FVS9,Q8L617,A0A1P8BAW1 A4FVS9_ARATH,Q8L617_ARATH,A0A1P8BAW1_ARATH At1g76360 (Protein kinase superfamily protein),Protein kinase superfamily protein (Uncharacterized protein At5g25440),Protein kinase superfamily protein 54172,35005,37246 At1g76360 (Protein kinase superfamily protein),Protein kinase superfamily protein (Uncharacterized protein At5g25440),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2014614;,locus:2145522; AT1G76360,AT5G25440 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DZFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os09g0443600 protein B9G3W1 B9G3W1_ORYSJ Os09g0443600 OsJ_29542 OSNPB_090443600 ENOG411DZFZ MJM20.4 Q9LE86 Q9LE86_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (MJM20.4 protein) (Oxidoreductase 2OG-Fe(II) oxygenase family protein) ARA:AT3G12900-MONOMER; 39716 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (MJM20.4 protein) (Oxidoreductase 2OG-Fe(II) oxygenase family protein) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732] locus:2090359; AT3G12900 oxidoreductase 2OG-Fe(II) oxygenase family protein NA NA NA NA NA NA NA ENOG411DZFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os02g0764200 protein (Putative xyloglucan fucosyltransferase),Os10g0125100 protein Q6Z7Q3,A0A0P0XRL8 Q6Z7Q3_ORYSJ,A0A0P0XRL8_ORYSJ Os02g0764200 Os02g0764200 OsJ_08491 OSNPB_020764200 P0539D10.15,Os10g0125100 OSNPB_100125100 ENOG411DZFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endoplasmic reticulum-Golgi intermediate compartment protein Os05g0490200 protein,Os05g0490200 protein (Fragment) Q6F325,A0A0P0WP34,A0A0P0WP21 Q6F325_ORYSJ,A0A0P0WP34_ORYSJ,A0A0P0WP21_ORYSJ Os05g0490200 Os05g0490200 OsJ_19017 OSJNBa0088I06.2 OSNPB_050490200,Os05g0490200 OSNPB_050490200 ENOG411DZFA PAT04 Q9M1K5,F4J0U7 ZDH13_ARATH,F4J0U7_ARATH Probable protein S-acyltransferase 4 (EC 2.3.1.225) (Probable palmitoyltransferase At3g56930) (Zinc finger DHHC domain-containing protein At3g56930),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.5}. 2.3.1.225; 2.3.1.225 54777,50234 Probable protein S-acyltransferase 4 (EC 2.3.1.225) (Probable palmitoyltransferase At3g56930) (Zinc finger DHHC domain-containing protein At3g56930),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; root hair [GO:0035618]; trans-Golgi network transport vesicle [GO:0030140]; protein-cysteine S-palmitoyltransferase activity [GO:0019706]; root hair elongation [GO:0048767],integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2080555; AT3G56930 Zinc finger DHHC domain-containing protein S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) (Fragment),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q0JNM0,A0A0P0Y6S7,A0A0P0XYE1 Q0JNM0_ORYSJ,A0A0P0Y6S7_ORYSJ,A0A0P0XYE1_ORYSJ Os01g0279000 Os01g0279000 OSNPB_010279000,Os12g0131200 OSNPB_120131200,Os11g0133800 OSNPB_110133800 ENOG411DZFC Q8VYL1,F4JYC0 KAD5_ARATH,F4JYC0_ARATH Adenylate kinase 5, chloroplastic (EC 2.7.4.3) (ATP-AMP transphosphorylase 5) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 5) (AMK5),Adenylate kinase family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18162585}. FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. {ECO:0000269|PubMed:18162585}. ARA:AT5G35170-MONOMER; R-ATH-499943; 2.7.4.3; 2.7.4.3 65738,64913 Adenylate kinase 5, chloroplastic (EC 2.7.4.3) (ATP-AMP transphosphorylase 5) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 5) (AMK5),Adenylate kinase family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524],adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524] locus:2182407; AT5G35170 Adenylate kinase family protein Probable adenylate kinase 5, chloroplastic (EC 2.7.4.3) (Adenylate monophosphate kinase 5),Os08g0288200 protein (Fragment) Q0J6P7,A0A0P0XE97 KAD5_ORYSJ,A0A0P0XE97_ORYSJ Os08g0288200 LOC_Os08g19140 B1114E07.12,Os08g0288200 OSNPB_080288200 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ENOG411DZFM Q8LA90,Q9SAI9 Q8LA90_ARATH,Q9SAI9_ARATH At1g80690 (PPPDE putative thiol peptidase family protein),F23A5.4 protein (PPPDE putative thiol peptidase family protein) 25064,25484 At1g80690 (PPPDE putative thiol peptidase family protein),F23A5.4 protein (PPPDE putative thiol peptidase family protein) locus:2025752; AT1G80690 Pfam:DUF862 NA NA NA NA NA NA NA ENOG411DZFN NAC029 O49255 NAC29_ARATH NAC transcription factor 29 (AtNAC029) (Protein NAC-LIKE, ACTIVATED BY AP3/PI) (AtNAP) DISRUPTION PHENOTYPE: No visible phenotype, but delayed leaf senescence (PubMed:16640597, PubMed:22184656). No visible phenotype under normal growth conditions, but mutant leaves show a stay-green phenotype and deficiency in chlorophyll degradation during extended darkness. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:22184656}. Significantly delayed leaf senescence. Severely delayed leaf senescence-S. Gan-2006 FUNCTION: Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. MISCELLANEOUS: Plants silencing NAC029 produce abnormally shaped seeds. {ECO:0000269|PubMed:18849494}. 31426 NAC transcription factor 29 (AtNAC029) (Protein NAC-LIKE, ACTIVATED BY AP3/PI) (AtNAP) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; fruit ripening [GO:0009835]; leaf senescence [GO:0010150]; multidimensional cell growth [GO:0009825]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed at the base of the inflorescence meristem and at late stages of development in petals and stamens. Up-regulated during leaf senescence. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:9489703}. TISSUE SPECIFICITY: Expressed in senescing leaves, petals and sepals. {ECO:0000269|PubMed:16640597}. locus:2007166; AT1G69490 nac domain protein NA NA NA NA NA NA NA ENOG411DZFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os05g0527700 protein (cDNA clone:002-180-D07, full insert sequence),Os09g0482860 protein (cDNA clone:001-204-H11, full insert sequence) (cDNA clone:J013127L05, full insert sequence),Os01g0869400 protein (Fragment),Os05g0527600 protein (Fragment),Os05g0527800 protein (Fragment),Os09g0483000 protein,Os05g0527200 protein (Fragment) Q65XD0,Q0J0U6,Q65XD1,B7END2,A0A0P0VAT9,A0A0P0WQ19,A0A0P0WQ54,A0A0P0XNB8,A0A0P0WQ66 Q65XD0_ORYSJ,Q0J0U6_ORYSJ,Q65XD1_ORYSJ,B7END2_ORYSJ,A0A0P0VAT9_ORYSJ,A0A0P0WQ19_ORYSJ,A0A0P0WQ54_ORYSJ,A0A0P0XNB8_ORYSJ,A0A0P0WQ66_ORYSJ Os05g0527800 OJ1187_E11.9 OsJ_19282 OSNPB_050527800,Os09g0482900 Os09g0482900 OsJ_29801 OSNPB_090482900,Os05g0527700 Os05g0527700 OJ1187_E11.8 OSNPB_050527700,Os09g0482860 OSNPB_090482860,Os01g0869400 OSNPB_010869400,Os05g0527600 OSNPB_050527600,Os05g0527800 OSNPB_050527800,Os09g0483000 OSNPB_090483000,Os05g0527200 OSNPB_050527200 ENOG411DZFJ ACX2 O65201,F4KGI8 ACOX2_ARATH,F4KGI8_ARATH Acyl-coenzyme A oxidase 2, peroxisomal (AOX 2) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX2),Acyl-coenzyme A oxidase Lipid catabolism during germination and early post-germinative growth was delayed in the acx2-1 mutant with 3-day-old seedlings accumulating long-chain acyl-CoAs. Mutant plants have reduced medium- and long-chain Acyl-CoA enzyme activity. Seedling growth and establishment in the absence of an exogenous supply of sucrose was unaffected. Unlike acx1-1 mutants jasmonic acid accumulation was not reduced upon wounding of mutant plants when compared to the wild type.,Double mutant seedlings were unable to catabolize seed storage lipids and accumulated long-chain acyl-CoAs. The acx1-1 acx2-1 seedlings were also unable to establish photosynthetic competency in the absence of an exogenous carbon supply a phenotype that is shared with a number of other Arabidopsis mutants disrupted in storage lipid breakdown. Germination frequency of the double mutant was significantly reduced compared with wild-type seeds. This was unaffected by the addition of exogenous sucrose but was improved by dormancy-breaking treatments such as cold stratification and after-ripening. Peroxisomes in the cotyledons were enlarged in double mutants while in single mutants (acx1-1 and acx2-1) peroxisomes were identical to the wild type. Delayed lipid elongation and breakdown-I. Graham-2005 FUNCTION: Catalyzes the desaturation of long-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on substrates longer than C14 and mostly with C18-CoA. Activity on long-chain mono-unsaturated substrates is double than with the corresponding saturated substrates. ARA:AT5G65110-MONOMER;MetaCyc:AT5G65110-MONOMER; 1.3.3.6; 1.3.3.6 77480,72262 Acyl-coenzyme A oxidase 2, peroxisomal (AOX 2) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX2),Acyl-coenzyme A oxidase peroxisome [GO:0005777]; acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; flavin adenine dinucleotide binding [GO:0050660]; fatty acid beta-oxidation [GO:0006635]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539]; long-chain fatty acid metabolic process [GO:0001676],peroxisome [GO:0005777]; acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid beta-oxidation [GO:0006635] DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak at day 2 and then declines steadily until day 8. {ECO:0000269|PubMed:10571860}. TISSUE SPECIFICITY: Expressed mainly in flowers and young seedlings. Lower expression in roots, leaves and bracts. {ECO:0000269|PubMed:10571860}. locus:2171825; AT5G65110 acyl-coenzyme A oxidase Acyl-coenzyme A oxidase Q2R1G8 Q2R1G8_ORYSJ Os11g0605500 LOC_Os11g39220 OSNPB_110605500 ENOG411E2K1 Q8GW90,F4KFF0,F4KFE9 Q8GW90_ARATH,F4KFF0_ARATH,F4KFE9_ARATH Transmembrane protein (Uncharacterized protein At5g09995),Transmembrane protein 22446,28580,28481 Transmembrane protein (Uncharacterized protein At5g09995),Transmembrane protein integral component of membrane [GO:0016021] locus:505006593; AT5G09995 NA Os06g0225400 protein Q67X29,A0A0P0WU73 Q67X29_ORYSJ,A0A0P0WU73_ORYSJ P0690H04.6-1 Os06g0225400 OsJ_20660 OSNPB_060225400,Os06g0225400 OSNPB_060225400 ENOG411E2KW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0469000 protein Q6K8H5 Q6K8H5_ORYSJ Os02g0469000 OJ1057_F01.22 OsJ_06678 OSNPB_020469000 ENOG411E2KP DREB1D Q9FJ93 DRE1D_ARATH Dehydration-responsive element-binding protein 1D (Protein DREB1D) (C-repeat/dehydration-responsive element-binding factor 4) (C-repeat-binding factor 4) (CRT/DRE-binding factor 4) FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. 24956 Dehydration-responsive element-binding protein 1D (Protein DREB1D) (C-repeat/dehydration-responsive element-binding factor 4) (C-repeat-binding factor 4) (CRT/DRE-binding factor 4) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; glucosinolate metabolic process [GO:0019760]; transcription, DNA-templated [GO:0006351] locus:2173113; AT5G51990 binding factor NA NA NA NA NA NA NA ENOG411E649 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os06g0266400 protein (Putative chemocyanin) Q5Z6N2 Q5Z6N2_ORYSJ Os06g0266400 OJ1001_B06.35 OsJ_20909 OSNPB_060266400 P0528B02.7 ENOG411E648 Q8RU85 Q8RU85_ARATH At2g31940/F20M17.2 (Expressed protein) (Transmembrane protein) 10062 At2g31940/F20M17.2 (Expressed protein) (Transmembrane protein) integral component of membrane [GO:0016021] locus:505006283; AT2G31945 NA Os06g0207200 protein (cDNA clone:001-101-B04, full insert sequence) Q69TF3 Q69TF3_ORYSJ Os06g0207200 Os06g0207200 OSNPB_060207200 P0529B09.17 ENOG411E645 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome c oxidase Cytochrome c oxidase subunit Vb (Os01g0612200 protein) (Putative cytochrome c oxidase-related) (cDNA clone:J023089B16, full insert sequence) P92683 P92683_ORYSJ coxVb Os01g0612200 OSNPB_010612200 P0046B10.19 ENOG411E644 NF-YC13 Q9FHS0 Q9FHS0_ARATH Nuclear factor Y, subunit C13 (Uncharacterized protein At5g43250) Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 14672 Nuclear factor Y, subunit C13 (Uncharacterized protein At5g43250) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2169238; AT5G43250 factor y subunit Os01g0183400 protein Q5VRY6 Q5VRY6_ORYSJ Os01g0183400 Os01g0183400 OSNPB_010183400 P0489A01.12 ENOG411E647 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein Os05g0376800 protein (Putative gibberellin-induced protein) (cDNA clone:002-115-G05, full insert sequence) Q6AUP4 Q6AUP4_ORYSJ Os05g0376800 OsJ_18341 OSJNBa0007A06.11 OSJNBa0039A21.1 OSNPB_050376800 ENOG411E646 LTP12 Q9SCZ0 NLTPC_ARATH Non-specific lipid-transfer protein 12 (LTP 12) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 12572 Non-specific lipid-transfer protein 12 (LTP 12) membrane [GO:0016020]; plant-type cell wall [GO:0009505]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2081840; AT3G51590 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) Non-specific lipid-transfer protein 2A (LTP 2A),Non-specific lipid-transfer protein 2B (LTP 2B) (LTP B1),Non-specific lipid-transfer protein 1 (LTP 1) (PAPI),Non-specific lipid-transfer protein Q7XJ39,Q2QYL2,Q0IQK9,Q53MW2,Q7XBA6,A0A0P0Y6A6 NLT2A_ORYSJ,NLT2B_ORYSJ,NLTP1_ORYSJ,Q53MW2_ORYSJ,Q7XBA6_ORYSJ,A0A0P0Y6A6_ORYSJ LTP2-A Os11g0115350 LOC_Os11g02369,LTP2-B LTPB-1 Os12g0115000 LOC_Os12g02310 OsJ_033643,LTP Os12g0115100 LOC_Os12g02320 OsJ_033644,Os11g0427800 LOC_Os11g24070 Os11g0427800 OsJ_33751 OSNPB_110427800,Os11g0115400 Os11g0115400 OsJ_32719 OSNPB_110115400,Os12g0115000 OSNPB_120115000 FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.,FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. {ECO:0000256|RuleBase:RU000628}. ENOG411E641 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase Rpb2 domain 6 NA NA NA NA NA NA NA ENOG411E640 Q9C7K7 Q9C7K7_ARATH At1g56320 (Predicted GPI-anchored protein) (Uncharacterized protein F14G9.7) 17922 At1g56320 (Predicted GPI-anchored protein) (Uncharacterized protein F14G9.7) anchored component of membrane [GO:0031225] locus:2011811; AT1G56320 NA NA NA NA NA NA NA NA ENOG411E643 Q9T0H1,Q9SJ31,A0A1P8AYP6 Q9T0H1_ARATH,Q9SJ31_ARATH,A0A1P8AYP6_ARATH At4g13500 (Transmembrane protein) (Uncharacterized protein AT4g13500) (Uncharacterized protein T6G15.50),Expressed protein (Transmembrane protein),Transmembrane protein 13817,13808,9744 At4g13500 (Transmembrane protein) (Uncharacterized protein AT4g13500) (Uncharacterized protein T6G15.50),Expressed protein (Transmembrane protein),Transmembrane protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2140867;,locus:2051264; AT4G13500,AT2G05310 NA Expressed protein (Os03g0595300 protein) (cDNA clone:J013048M24, full insert sequence) Q851H6 Q851H6_ORYSJ LOC_Os03g39830 Os03g0595300 OsJ_11626 OSJNBb0042N11.12 OSNPB_030595300 ENOG411E642 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os09g0361300 protein A3BY13 A3BY13_ORYSJ Os09g0361300 OsJ_29064 OSNPB_090361300 ENOG411E64Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oleosin NA NA NA NA NA NA NA ENOG411E64X Q67ZR8,Q8VXX1,Q8GSF0 Q67ZR8_ARATH,Q8VXX1_ARATH,Q8GSF0_ARATH Transmembrane protein (Uncharacterized protein At4g13530),Transmembrane protein (Uncharacterized protein At4g10080/T5L19_210) 30222,30094,35342 Transmembrane protein (Uncharacterized protein At4g13530),Transmembrane protein (Uncharacterized protein At4g10080/T5L19_210) integral component of membrane [GO:0016021] locus:2140897;,locus:2140528; AT4G13530,AT4G10080 NA Os02g0558500 protein Q6YVX2 Q6YVX2_ORYSJ Os02g0558500 Os02g0558500 OSJNBb0038F20.18 OSNPB_020558500 ENOG411E64Z CKS1,CKS2 O23249,Q9SJJ5 CKS1_ARATH,CKS2_ARATH Cyclin-dependent kinases regulatory subunit 1 (CKS1-At),Cyclin-dependent kinases regulatory subunit 2 FUNCTION: Associates with cyclin-dependent kinases (CDKs) and plays an essential role in the regulation of the cell cycle that affects plant growth rate. May inhibit both the G1/S and G2/M phases. {ECO:0000269|PubMed:11319029}.,FUNCTION: Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. {ECO:0000250}. MISCELLANEOUS: Plants overexpressing CKS1 show reduced leaf size and root growth rates resulting from an increase of the cell-cycle duration with an equal extension of both G1 and G2 phases and a shortening of the meristem. 10521,9987 Cyclin-dependent kinases regulatory subunit 1 (CKS1-At),Cyclin-dependent kinases regulatory subunit 2 cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; cyclin-dependent protein serine/threonine kinase activator activity [GO:0061575]; histone binding [GO:0042393]; protein kinase binding [GO:0019901]; ubiquitin binding [GO:0043130]; cell division [GO:0051301]; DNA endoreduplication [GO:0042023]; mitotic cell cycle [GO:0000278]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cell cycle [GO:0051726]; regulation of mitotic cell cycle [GO:0007346],cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; cyclin-dependent protein serine/threonine kinase activator activity [GO:0061575]; histone binding [GO:0042393]; protein kinase binding [GO:0019901]; ubiquitin binding [GO:0043130]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of mitotic cell cycle [GO:0007346] locus:2057836;,locus:2057825; AT2G27960,AT2G27970 Cyclin-dependent kinases regulatory subunit Cyclin-dependent kinases regulatory subunit 1 Q6PS57 CKS1_ORYSJ CKS1 Os03g0146300 LOC_Os03g05300 OsJ_009058 OSJNBa0067N01.15 FUNCTION: Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. {ECO:0000250}. ENOG411E64U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: solute carrier family 33 (acetyl-CoA transporter) member 1 NA NA NA NA NA NA NA ENOG411E64T MHM17.10 F4K956 F4K956_ARATH Cotton fiber protein 42728 Cotton fiber protein integral component of membrane [GO:0016021] locus:2164625; AT5G56980 NA NA NA NA NA NA NA NA ENOG411E64W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E64V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family NA NA NA NA NA NA NA ENOG411E64P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: centrin EF-hand protein NA NA NA NA NA NA NA ENOG411E64S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein 1 Os03g0299600 protein (Fragment) Q0DSM5 Q0DSM5_ORYSJ Os03g0299600 OSNPB_030299600 ENOG411E64R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TBC NA NA NA NA NA NA NA ENOG411E64M Q9SV88 Q9SV88_ARATH Glycine-rich protein (Uncharacterized protein At4g10330) (Uncharacterized protein F24G24.130) The mutant shows ABA insensitivity in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the mutant lose more water than those of the wild-type plants under dehydration condition; both young seedlings and mature plants of the mutant have lower capacity to conserve water during drought stress in comparison with wild-type plants. The ROS levels increase in the mutant in comparison with wild-type plants in both the whole leaves and in guard cells. Treatment with low concentrations of ABA reduces ROS levels in both whole leaves(1 to 10 uM ABA application) and in guard cells(5 uM ABA application) in the mutant plants. 13536 Glycine-rich protein (Uncharacterized protein At4g10330) (Uncharacterized protein F24G24.130) integral component of membrane [GO:0016021] locus:2122779; AT4G10330 NA Expressed protein (Os11g0242700 protein) Q53N84 Q53N84_ORYSJ LOC_Os11g13880 Os11g0242700 OSNPB_110242700 ENOG411E64N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial import receptor subunit Tom22 NA NA NA NA NA NA NA ENOG411E64H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0940600 protein (cDNA clone:J023062H24, full insert sequence) Q5JKM1 Q5JKM1_ORYSJ Os01g0940600 OSNPB_010940600 P0432C03.8 ENOG411E64K MPA22.2 Q8RWG7 Q8RWG7_ARATH Maltase-glucoamylase, intestinal protein (Uncharacterized protein At5g37480) 17365 Maltase-glucoamylase, intestinal protein (Uncharacterized protein At5g37480) integral component of membrane [GO:0016021] locus:2169856; AT5G37480 NA Expressed protein (Os03g0748600 protein) (cDNA clone:001-105-C06, full insert sequence) Q10CV8 Q10CV8_ORYSJ OSJNBa0069E14.10 LOC_Os03g53740 Os03g0748600 OsJ_12571 OSNPB_030748600 ENOG411E64E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA A20-like zinc finger Zinc finger AN1 domain-containing stress-associated protein 13 (OsSAP13),Zinc finger A20 and AN1 domain-containing stress-associated protein 2 (OsSAP2),Os01g0717601 protein (Fragment) Q5JLA7,Q942F8,A0A0P0V7D3 SAP13_ORYSJ,SAP2_ORYSJ,A0A0P0V7D3_ORYSJ SAP13 Os01g0717601 LOC_Os01g51990 P0480C01.4 P0683B11.29,SAP2 Os01g0718000 LOC_Os01g52030 P0480C01.11 P0683B11.36,Os01g0717601 OSNPB_010717601 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E64D OEP164 Q9LZH8 OP164_ARATH Outer envelope pore protein 16-4, chloroplastic (Chloroplastic outer envelope pore protein of 16 kDa 4) (AtOEP16-4) (OEP16-4) FUNCTION: Voltage-dependent high-conductance channel with a slight cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB. {ECO:0000250, ECO:0000269|PubMed:17202255}. 14071 Outer envelope pore protein 16-4, chloroplastic (Chloroplastic outer envelope pore protein of 16 kDa 4) (AtOEP16-4) (OEP16-4) chloroplast outer membrane [GO:0009707]; plastid outer membrane [GO:0009527]; pore complex [GO:0046930]; porin activity [GO:0015288]; protein channel activity [GO:0015266]; protein homodimerization activity [GO:0042803]; ion transport [GO:0006811]; protein localization to organelle [GO:0033365] locus:2081615; AT3G62880 Tim17/Tim22/Tim23/Pmp24 family NA NA NA NA NA NA NA ENOG411E64G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Os07g0516300 protein (cDNA clone:J023025A03, full insert sequence) (cDNA clone:J033105M03, full insert sequence) Q6Z2H5 Q6Z2H5_ORYSJ Os07g0516300 Os07g0516300 OSNPB_070516300 P0650C03.15 ENOG411E64F T19K4.240 O65648 O65648_ARATH AT4g36110 (AT4g36110/T19K4_240) (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family) 11914 AT4g36110 (AT4g36110/T19K4_240) (Putative auxin-induced protein) (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2135144; AT4G36110 auxin-responsive protein NA NA NA NA NA NA NA ENOG411E64A CP12-2 Q9LZP9 CP122_ARATH Calvin cycle protein CP12-2, chloroplastic (CP12 domain-containing protein 2) (Chloroplast protein 12-2) FUNCTION: Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues. {ECO:0000269|PubMed:16258009, ECO:0000269|PubMed:20399532}. MISCELLANEOUS: Binds copper and nickel ions. Copper ions catalyze the oxidation of reduced thiol groups and thus promote formation of the disulfide bonds required for linker activity (By similarity). {ECO:0000250}. ARA:AT3G62410-MONOMER;MetaCyc:AT3G62410-MONOMER; 14167 Calvin cycle protein CP12-2, chloroplastic (CP12 domain-containing protein 2) (Chloroplast protein 12-2) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; protein complex [GO:0043234]; supramolecular complex [GO:0099080]; copper ion binding [GO:0005507]; enzyme binding [GO:0019899]; nickel cation binding [GO:0016151]; protein binding, bridging [GO:0030674]; protein complex binding [GO:0032403]; cellular response to anoxia [GO:0071454]; cellular response to cold [GO:0070417]; cellular response to heat [GO:0034605]; negative regulation of reductive pentose-phosphate cycle [GO:0080153]; peptide cross-linking via L-cystine [GO:0018316]; protein complex assembly [GO:0006461]; reductive pentose-phosphate cycle [GO:0019253]; response to light stimulus [GO:0009416]; response to sucrose [GO:0009744] DEVELOPMENTAL STAGE: In flowers, expressed in the sepals and the style. In siliques, present at the base and tip. {ECO:0000269|PubMed:18974062}. TISSUE SPECIFICITY: Mostly expressed in cotyledons, leaves and flower stalks, and, to a lower extent, in flowers and stems. Barely detectable in roots and siliques. {ECO:0000269|PubMed:15533878, ECO:0000269|PubMed:18974062}. locus:2096009; AT3G62410 calvin cycle protein CP12, putative, expressed (Os03g0306800 protein) (cDNA clone:J033138B13, full insert sequence) Q10MJ5 Q10MJ5_ORYSJ Os03g0306800 LOC_Os03g19380 Os03g0306800 OsJ_10560 OSNPB_030306800 ENOG411E64C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E64B TAC1 Q1PEU1,A0A1P8AYC0,F4IJ79,F4IJ80 Q1PEU1_ARATH,A0A1P8AYC0_ARATH,F4IJ79_ARATH,F4IJ80_ARATH NAD-dependent protein deacetylase HST1-like protein 30779,33174,32530,32288 NAD-dependent protein deacetylase HST1-like protein locus:2039993; AT2G46640 NA NA NA NA NA NA NA NA ENOG411DS89 ANT1 Q9SF09 ANT1_ARATH Amino acid transporter ANT1 (Aromatic and neutral amino acid transporter 1) FUNCTION: Translocates aromatic and neutral amino acids such as tyrosine, tryptophan, phenylalanine, histidine, proline, leucine, valine, glutamine, as well as arginine. Transports the auxins indole-3-acetic acid (IAA) and 2,4-dichlorophenoxyacetic acid (2,4-D). {ECO:0000269|PubMed:11299361}. R-ATH-352230;R-ATH-428559;R-ATH-71240; 46470 Amino acid transporter ANT1 (Aromatic and neutral amino acid transporter 1) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; aromatic amino acid transmembrane transporter activity [GO:0015173]; neutral amino acid transmembrane transporter activity [GO:0015175]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Ubiquitous (PubMed:27925655). Highly expressed in flowers and cauline leaves and at lower levels in stems, leaves and roots (PubMed:11299361). {ECO:0000269|PubMed:11299361, ECO:0000269|PubMed:27925655}. locus:2081471; AT3G11900 amino acid Os03g0817200 protein (Putative amino acid transporter) (Transmembrane amino acid transporter protein, expressed),Os07g0231400 protein (Fragment) Q84TX7,A0A0P0X466 Q84TX7_ORYSJ,A0A0P0X466_ORYSJ LOC_Os03g60260 Os03g0817200 OSJNBa0094J08.18 OSNPB_030817200,Os07g0231400 OSNPB_070231400 ENOG411DS83 RPL10AC,RPL10AA,RPL10AB P59231,Q8VZB9,P59230 R10A3_ARATH,R10A1_ARATH,R10A2_ARATH 60S ribosomal protein L10a-3,60S ribosomal protein L10a-1,60S ribosomal protein L10a-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 24532,24469,24425 60S ribosomal protein L10a-3,60S ribosomal protein L10a-1,60S ribosomal protein L10a-2 cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA [GO:0000470]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA [GO:0000470]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; adaxial/abaxial pattern specification [GO:0009955]; maturation of LSU-rRNA [GO:0000470]; mature ribosome assembly [GO:0042256]; post-embryonic plant organ development [GO:0090696]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2176337;,locus:2201811;,locus:2042087; AT5G22440,AT1G08360,AT2G27530 ribosomal protein 60S ribosomal protein L10a,Ribosomal protein,Os08g0558800 protein,Os02g0321900 protein (Fragment),Os08g0558800 protein (Fragment),Os08g0558000 protein B7F845,Q6ER67,B7F9R7,A0A0P0XJL9,A0A0P0VIA4,A0A0N7KQA6,A0A0P0XJ66 R10A_ORYSJ,Q6ER67_ORYSJ,B7F9R7_ORYSJ,A0A0P0XJL9_ORYSJ,A0A0P0VIA4_ORYSJ,A0A0N7KQA6_ORYSJ,A0A0P0XJ66_ORYSJ RPL10A Os08g0558800 LOC_Os08g44450 OsJ_28271,Os02g0321900 Os02g0321900 OSJNBa0073A18.28 OSNPB_020321900,Os01g0860300 OSNPB_010860300,Os08g0558800 OSNPB_080558800,Os02g0321900 OSNPB_020321900,Os08g0558000 OSNPB_080558000 ENOG411DS81 GCP2 O49653 O49653_ARATH Probable tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) (Glycoprotease 2) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein GCP2) (tRNA threonylcarbamoyladenosine biosynthesis protein GCP2) FUNCTION: Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. {ECO:0000256|HAMAP-Rule:MF_03180}. ARA:AT4G22720-MONOMER; 2.3.1.234 38768 Probable tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) (Glycoprotease 2) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein GCP2) (tRNA threonylcarbamoyladenosine biosynthesis protein GCP2) cytosol [GO:0005829]; EKC/KEOPS complex [GO:0000408]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; N(6)-L-threonylcarbamoyladenine synthase [GO:0061711]; tRNA threonylcarbamoyladenosine modification [GO:0002949] locus:2132624; AT4G22720 tRNA threonylcarbamoyladenosine biosynthesis protein Probable tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) (Glycoprotease 2) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein Os05g0194600) (tRNA threonylcarbamoyladenosine biosynthesis protein Os05g0194600),Os05g0194600 protein Q6L4N8,A0A0P0WIX4 Q6L4N8_ORYSJ,A0A0P0WIX4_ORYSJ Os05g0194600 GCP2 Os05g0194600 OsJ_17435 OSNPB_050194600 P0473H02.4 P0681D04.16,Os05g0194600 OSNPB_050194600 FUNCTION: Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. {ECO:0000256|HAMAP-Rule:MF_03180}. ENOG411DS80 Q9SK09 VCL22_ARATH Vicilin-like seed storage protein At2g28490 (Globulin At2g28490) FUNCTION: Seed storage protein. {ECO:0000305}. 55705 Vicilin-like seed storage protein At2g28490 (Globulin At2g28490) plasmodesma [GO:0009506]; nutrient reservoir activity [GO:0045735] locus:2056568; AT2G28490 Vicilin-like antimicrobial peptides Os03g0336100 protein Q0DS36 Q0DS36_ORYSJ Os03g0336100 OSNPB_030336100 ENOG411DS86 PCMP-E19 P93005,A0A1P8AY39,A0A1P8AY14,A0A1P8AY27 PP181_ARATH,A0A1P8AY39_ARATH,A0A1P8AY14_ARATH,A0A1P8AY27_ARATH Pentatricopeptide repeat-containing protein At2g33680,Tetratricopeptide repeat (TPR)-like superfamily protein 80309,87420,88735,86567 Pentatricopeptide repeat-containing protein At2g33680,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2057630; AT2G33680 Pentatricopeptide repeat-containing protein Os01g0374200 protein (PPR-repeat protein-like) Q94E87 Q94E87_ORYSJ Os01g0374200 B1045D11.23 OsJ_01824 OSNPB_010374200 ENOG411DS8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os09g0133300 protein Q942B8,Q6K443 Q942B8_ORYSJ,Q6K443_ORYSJ Os01g0735900 Os01g0735900 B1060H01.36 OsJ_03371 OSNPB_010735900,P0406E03.27 Os09g0133300 OSNPB_090133300 ENOG411DS8H Q9LRP9 Q9LRP9_ARATH Trichohyalin 84801 Trichohyalin locus:2090151; AT3G15550 NA Os01g0176500 protein,Os05g0408000 protein,Os01g0176500 protein (Fragment) Q5VRW3,A0A0P0WM92,A0A0P0UYY0 Q5VRW3_ORYSJ,A0A0P0WM92_ORYSJ,A0A0P0UYY0_ORYSJ Os01g0176500 OSNPB_010176500 P0013F10.15,Os05g0408000 OSNPB_050408000,Os01g0176500 OSNPB_010176500 ENOG411DS8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN Alpha-amylase/trypsin inhibitor, putative, expressed (Os12g0630500 protein) (cDNA, clone: J100052G13, full insert sequence),Os12g0630200 protein (p21 protein, putative, expressed),Os08g0381600 protein,Os04g0306300 protein,Os08g0388150 protein (Fragment) Q2QLS3,Q2QLS7,A0A0P0XFC6,A0A0P0W889,A0A0P0XF93 Q2QLS3_ORYSJ,Q2QLS7_ORYSJ,A0A0P0XFC6_ORYSJ,A0A0P0W889_ORYSJ,A0A0P0XF93_ORYSJ Os12g0630500 LOC_Os12g43490 Os12g0630500 OSNPB_120630500,LOC_Os12g43450 Os12g0630200 OsJ_36959 OSNPB_120630200,Os08g0381600 OSNPB_080381600,Os04g0306300 OSNPB_040306300,Os08g0388150 OSNPB_080388150 ENOG411DS8C CDC6,CDC6B O82387,Q8W032,A0A1P8AUT2 CDC6A_ARATH,CDC6B_ARATH,A0A1P8AUT2_ARATH Cell division control protein 6 homolog (AtCDC6) (AtCDC6A) (Cdc6At) (Cell division control protein 6 homolog A),Cell division control protein 6 homolog B (AtCDC6b),Cell division control, Cdc6 FUNCTION: May be involved in the initiation of DNA replication. May play a role in endoreduplication. Could act as one of the factors that contributes to maintain endoreduplication competence. {ECO:0000305|PubMed:11752380}.,FUNCTION: May be involved in the initiation of DNA replication. {ECO:0000250|UniProtKB:O82387}. MISCELLANEOUS: Cells expressing ectopically CDC6 have increased levels of endopolyploidy. {ECO:0000269|PubMed:11752380}. R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69017;R-ATH-69298; 59841,55726,51867 Cell division control protein 6 homolog (AtCDC6) (AtCDC6A) (Cdc6At) (Cell division control protein 6 homolog A),Cell division control protein 6 homolog B (AtCDC6b),Cell division control, Cdc6 nucleus [GO:0005634]; cell division [GO:0051301]; DNA endoreduplication [GO:0042023]; DNA replication initiation [GO:0006270],nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; DNA replication initiation [GO:0006270],cell division [GO:0051301]; DNA replication initiation [GO:0006270] TISSUE SPECIFICITY: Highly expressed in roots, flower buds and etiolated seedlings. Expressed in leaves and stems (PubMed:11604464). Highly expressed in proliferating cells such as root meristems, leaf primordia and young growing leaves, as well as cells undergoing endoreduplication cycles (PubMed:11752380). {ECO:0000269|PubMed:11604464, ECO:0000269|PubMed:11752380}. locus:2060659;,locus:2007332; AT2G29680,AT1G07270 Cell division control protein 6 Cell division control protein 6 homolog Q5N897 CDC6_ORYSJ CDC6 Os01g0856000 LOC_Os01g63710 OJ1402_H07.11-1 OJ1402_H07.11-2 FUNCTION: May be involved in the initiation of DNA replication. {ECO:0000250|UniProtKB:O82387}. ENOG411DS8A PBG1 Q7DLR9 PSB4_ARATH Proteasome subunit beta type-4 (EC 3.4.25.1) (20S proteasome beta subunit G-1) (Proteasome component H) (Proteasome subunit beta type-7) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 27651 Proteasome subunit beta type-4 (EC 3.4.25.1) (20S proteasome beta subunit G-1) (Proteasome component H) (Proteasome subunit beta type-7) cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Ubiquitous low levels, higher expression in siliques and flowers. {ECO:0000269|PubMed:9611183}. locus:2010693; AT1G56450 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Proteasome subunit beta (EC 3.4.25.1) Q9LST4 Q9LST4_ORYSJ OsPBG1 Os09g0515200 OSNPB_090515200 P0450E05.24 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. ENOG411DS8F COAD Q9ZPV8 COAD_ARATH Phosphopantetheine adenylyltransferase (EC 2.7.7.3) (AtCoaD) (Dephospho-CoA pyrophosphorylase) (Pantetheine-phosphate adenylyltransferase) DISRUPTION PHENOTYPE: Plants are severely impaired in plant growth and seed production, but almost not affected in the accumulation of total fatty acids per seed. {ECO:0000269|PubMed:18621975}. FUNCTION: Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Does not accept 4'-phosphopantothenoylcysteine as a substrate. {ECO:0000269|PubMed:12860978, ECO:0000269|PubMed:18621975}. PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 4/5. 2.7.7.3 19168 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) (AtCoaD) (Dephospho-CoA pyrophosphorylase) (Pantetheine-phosphate adenylyltransferase) cytosol [GO:0005829]; ATP binding [GO:0005524]; pantetheine-phosphate adenylyltransferase activity [GO:0004595]; coenzyme A biosynthetic process [GO:0015937]; growth [GO:0040007]; lipid metabolic process [GO:0006629]; lipid storage [GO:0019915]; regulation of coenzyme A biosynthetic process [GO:0080020]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] locus:2062165; AT2G18250 Cytidylyltransferase Phosphopantetheine adenylyltransferase 2 (EC 2.7.7.3) (Dephospho-CoA pyrophosphorylase 2) (Pantetheine-phosphate adenylyltransferase 2),Os02g0134000 protein (Fragment) B9F2L1,A0A0P0VED7 COAD2_ORYSJ,A0A0P0VED7_ORYSJ Os02g0134000 LOC_Os02g04120 OsJ_05277 P0030G11,Os02g0134000 OSNPB_020134000 FUNCTION: Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Does not accept 4'-phosphopantothenoylcysteine as a substrate (By similarity). {ECO:0000250}. ENOG411DS8E MBG8.1 Q9FFV2,F4K1U5 Q9FFV2_ARATH,F4K1U5_ARATH Trafficking protein particle complex subunit FUNCTION: May play a role in vesicular transport from endoplasmic reticulum to Golgi. {ECO:0000256|PIRNR:PIRNR018293}. R-ATH-204005;R-ATH-8876198; 20760,22259 Trafficking protein particle complex subunit endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; TRAPP complex [GO:0030008]; Golgi vesicle transport [GO:0048193] locus:2160115; AT5G54750 Trafficking protein particle complex subunit Trafficking protein particle complex subunit Q8GRK9 Q8GRK9_ORYSJ P0524G08.123 OJ1003_C06.107 LOC_Os03g28400 Os03g0402000 Os03g28400 Os07g0642300 OsJ_11184 OsJ_25315 OSNPB_030402000 OSNPB_070642300 FUNCTION: May play a role in vesicular transport from endoplasmic reticulum to Golgi. {ECO:0000256|PIRNR:PIRNR018293}. ENOG411DS8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD linked oxidases C-terminal domain NA NA NA NA NA NA NA ENOG411DS8R SVR1,T5C2_40 Q8L960,Q9M185,A0A1P8AXV3 SVR1_ARATH,Q9M185_ARATH,A0A1P8AXV3_ARATH Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic (EC 5.4.99.-) (Protein PIGMENT DEFECTIVE 328) (Protein SUPPRESSOR OF VARIEGATION 1),Pseudouridine synthase family protein (Uncharacterized protein T5C2_40),Pseudouridine synthase family protein DISRUPTION PHENOTYPE: Yellow-green leaves and significantly reduced plant size. Impaired rRNA processing and translation in chloroplasts. {ECO:0000269|PubMed:18599582}. Yellow-green and significantly smaller than WT.,Similar to var2-5; svr1-1 double mutant. Not variegated. Smaller than WT.,Variegation caused by var2 single mutant is suppressed.,WT phenotype. The single var2 variegated phenotype is suppresed. Pale green seeds and seedlings-D. Meinke-2008 FUNCTION: Responsible for synthesis of pseudouridine in chloroplastic 23S ribosomal RNA (Probable). Necessary for normal chloroplast rRNA processing and translation. Required for normal chloroplast development and maintenance. May function in other plastids, such as root amyloplasts (PubMed:18599582). {ECO:0000269|PubMed:18599582, ECO:0000305|PubMed:18599582}. ARA:AT2G39140-MONOMER; 5.4.99.- 45108,8302,42947 Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic (EC 5.4.99.-) (Protein PIGMENT DEFECTIVE 328) (Protein SUPPRESSOR OF VARIEGATION 1),Pseudouridine synthase family protein (Uncharacterized protein T5C2_40),Pseudouridine synthase family protein amyloplast [GO:0009501]; chloroplast [GO:0009507]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; enzyme-directed rRNA pseudouridine synthesis [GO:0000455]; maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) [GO:0000488]; maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) [GO:0000489]; plastid translation [GO:0032544],amyloplast [GO:0009501]; chloroplast [GO:0009507]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; enzyme-directed rRNA pseudouridine synthesis [GO:0000455],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522] TISSUE SPECIFICITY: Highly expressed in young seedlings. Expressed in roots, rosette leaves, cauline leaves, stems and flowers. {ECO:0000269|PubMed:18599582}. locus:2056108;,locus:2102306; AT2G39140,AT3G43340 Pseudouridine synthase Os03g0152700 protein (RNA pseudouridylate synthase family protein, expressed) Q10RN1 Q10RN1_ORYSJ LOC_Os03g05806 Os03g0152700 OSNPB_030152700 ENOG411DS8W RECQL3 Q9FT72 RQL3_ARATH ATP-dependent DNA helicase Q-like 3 (EC 3.6.4.12) (RecQ-like protein 3) (AtRecQ3) (AtRecQl3) FUNCTION: 3'-5' DNA helicase that may play a role in the repair of DNA. Exhibits an ATP or dATP-dependent DNA-helicase activity. Can not use GTP/dGTP, CTP/dCTP or UTP/dUTP as nucleotide cofactors. Catalyzes DNA strand annealing. On nicked Holliday junctions, unwinds the lagging strand. Cannot act on intact Holliday junctions. {ECO:0000269|PubMed:19755539}. 3.6.4.12 79944 ATP-dependent DNA helicase Q-like 3 (EC 3.6.4.12) (RecQ-like protein 3) (AtRecQ3) (AtRecQl3) chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5' DNA helicase activity [GO:0043138]; annealing helicase activity [GO:0036310]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; ATP-dependent helicase activity [GO:0008026]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; metal ion binding [GO:0046872]; DNA recombination [GO:0006310]; double-strand break repair via homologous recombination [GO:0000724] TISSUE SPECIFICITY: Expressed in roots, seedlings, young leaves, shoots, shoot apical mersitem, inflorescences, flowers, siliques and seeds. {ECO:0000269|PubMed:11058127, ECO:0000269|PubMed:12856935}. locus:2127998; AT4G35740 ATP-dependent DNA helicase Q-like Os02g0780800 protein A0A0P0VQJ4 A0A0P0VQJ4_ORYSJ Os02g0780800 OSNPB_020780800 ENOG411DS8V IMPDH P47996,Q9SA34 IMDH1_ARATH,IMDH2_ARATH Inosine-5'-monophosphate dehydrogenase 1 (IMP dehydrogenase 1) (IMPD 1) (IMPDH 1) (EC 1.1.1.205),Inosine-5'-monophosphate dehydrogenase 2 (IMP dehydrogenase 2) (IMPD 2) (IMPDH 2) (EC 1.1.1.205) FUNCTION: Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. {ECO:0000255|HAMAP-Rule:MF_03156}. PATHWAY: Purine metabolism; XMP biosynthesis via de novo pathway; XMP from IMP: step 1/1. {ECO:0000255|HAMAP-Rule:MF_03156}. ARA:AT1G79470-MONOMER;,ARA:AT1G16350-MONOMER; R-ATH-6798695;R-ATH-73817; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Metabolic pathways (01100),Drug metabolism - other enzymes (00983) 1.1.1.205 54194,54051 Inosine-5'-monophosphate dehydrogenase 1 (IMP dehydrogenase 1) (IMPD 1) (IMPDH 1) (EC 1.1.1.205),Inosine-5'-monophosphate dehydrogenase 2 (IMP dehydrogenase 2) (IMPD 2) (IMPDH 2) (EC 1.1.1.205) cytoplasm [GO:0005737]; cytosol [GO:0005829]; IMP dehydrogenase activity [GO:0003938]; metal ion binding [GO:0046872]; GMP biosynthetic process [GO:0006177]; GTP biosynthetic process [GO:0006183],cytoplasm [GO:0005737]; cytosol [GO:0005829]; IMP dehydrogenase activity [GO:0003938]; metal ion binding [GO:0046872]; GMP biosynthetic process [GO:0006177]; GTP biosynthetic process [GO:0006183]; response to cytokinin [GO:0009735] locus:2206365;,locus:2032775; AT1G79470,AT1G16350 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP) the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides and therefore plays an important role in the regulation of cell growth (By similarity) Os03g0780500 protein,Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) Q0DN24,Q10CU7 Q0DN24_ORYSJ,Q10CU7_ORYSJ Os03g0780500 OSNPB_030780500,Os03g0780500 LOC_Os03g56800 OSNPB_030780500 ENOG411DS8U APK3,APK2,APK1 Q9SRW7,O49196,Q43295,A0A1I9LSH7 APK3_ARATH,APK2_ARATH,APK1_ARATH,A0A1I9LSH7_ARATH Adenylyl-sulfate kinase 3 (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 3) (Adenosine-5'-phosphosulfate kinase 3) (APS kinase 3),Adenylyl-sulfate kinase 2, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 2) (Adenosine-5'-phosphosulfate kinase 2) (APS kinase 2),Adenylyl-sulfate kinase 1, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 1) (Adenosine-5'-phosphosulfate kinase 1) (APS kinase 1),Adenylyl-sulfate kinase (EC 2.7.1.25) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19304933}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Apk1 and apk2 double mutant exhibits a semi-dwarf phenotype. {ECO:0000269|PubMed:19304933, ECO:0000269|PubMed:19903478}. FUNCTION: Catalyzes the synthesis of activated sulfate. Essential for plant reproduction and viability. {ECO:0000269|PubMed:19304933, ECO:0000269|PubMed:19903478}.,FUNCTION: Catalyzes the synthesis of activated sulfate. Essential for plant reproduction and viability. Required for the production of glucosinolates. {ECO:0000269|PubMed:11488606, ECO:0000269|PubMed:19304933, ECO:0000269|PubMed:19903478, ECO:0000269|PubMed:23218016}.,FUNCTION: Catalyzes the synthesis of activated sulfate. Essential for plant reproduction and viability. Required for the production of glucosinolates. {ECO:0000269|PubMed:11488606, ECO:0000269|PubMed:19304933, ECO:0000269|PubMed:19903478, ECO:0000269|PubMed:23218016, ECO:0000269|PubMed:7988678}.,FUNCTION: Catalyzes the synthesis of activated sulfate. {ECO:0000256|RuleBase:RU004347}. PATHWAY: Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3.,PATHWAY: Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3. {ECO:0000256|RuleBase:RU004347}. ARA:AT3G03900-MONOMER;,ARA:AT4G39940-MONOMER;MetaCyc:AT4G39940-MONOMER;,ARA:AT2G14750-MONOMER;MetaCyc:AT2G14750-MONOMER; 2.7.1.25; Microbial metabolism in diverse environments (01120),Purine metabolism (00230),Sulfur metabolism (00920),Metabolic pathways (01100) 2.7.1.25 23146,31977,29787,16356 Adenylyl-sulfate kinase 3 (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 3) (Adenosine-5'-phosphosulfate kinase 3) (APS kinase 3),Adenylyl-sulfate kinase 2, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 2) (Adenosine-5'-phosphosulfate kinase 2) (APS kinase 2),Adenylyl-sulfate kinase 1, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 1) (Adenosine-5'-phosphosulfate kinase 1) (APS kinase 1),Adenylyl-sulfate kinase (EC 2.7.1.25) cytosol [GO:0005829]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; cysteine biosynthetic process [GO:0019344]; hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation [GO:0000103],chloroplast [GO:0009507]; plastid [GO:0009536]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; cysteine biosynthetic process [GO:0019344]; hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation [GO:0000103],chloroplast [GO:0009507]; plastid [GO:0009536]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; cysteine biosynthetic process [GO:0019344]; hydrogen sulfide biosynthetic process [GO:0070814]; phosphorylation [GO:0016310]; sulfate assimilation [GO:0000103],adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation [GO:0000103] TISSUE SPECIFICITY: Expressed in root vasculature, root tips, leaf epidermal and guard cells, pollen grains and radicle of immature seeds. {ECO:0000269|PubMed:19304933}.,TISSUE SPECIFICITY: Expressed in root vasculature, root tips, leaf epidermal cells and funiculus of developing seeds. {ECO:0000269|PubMed:19304933}.,TISSUE SPECIFICITY: Expressed in root vasculature, root tips, leaf epidermal and guard cells, pollen grains and funiculus of developing seeds. {ECO:0000269|PubMed:19304933}. locus:2079379;,locus:2140005;,locus:2046901; AT3G03900,AT4G39940,AT2G14750 Catalyzes the synthesis of activated sulfate (By similarity) Adenylyl-sulfate kinase (EC 2.7.1.25) Q6ZL22,A0A0P0VUL6,A0A0P0Y4P1 Q6ZL22_ORYSJ,A0A0P0VUL6_ORYSJ,A0A0P0Y4P1_ORYSJ Os07g0573100 Os07g0573100 OJ1699_E05.15 OsJ_24824 OSNPB_070573100,Os03g0202001 OSNPB_030202001,Os11g0634800 OSNPB_110634800 FUNCTION: Catalyzes the synthesis of activated sulfate. {ECO:0000256|RuleBase:RU004347}. ENOG411EFBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EC26 Q9MAB4 Q9MAB4_ARATH At3g05050/T12H1_1 (Protein kinase superfamily protein) (Putative cyclin-dependent protein kinase) R-ATH-674695;R-ATH-6796648; 66706 At3g05050/T12H1_1 (Protein kinase superfamily protein) (Putative cyclin-dependent protein kinase) nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468] locus:2096199; AT3G05050 S_TKc NA NA NA NA NA NA NA ENOG411EC24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os02g0152200 protein (cDNA clone:J013169P07, full insert sequence) Q0E3V9 Q0E3V9_ORYSJ Os02g0152200 Os02g0152200 OsJ_05405 OSNPB_020152200 ENOG411EC22 Q9SH36 Q9SH36_ARATH At1g63520 (F2K11.12) 59693 At1g63520 (F2K11.12) locus:2031393; AT1G63520 Domain of unknown function (DUF3527) NA NA NA NA NA NA NA ENOG411EC21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand_Ca_insen NA NA NA NA NA NA NA ENOG411EC28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0793500 protein Q6K681 Q6K681_ORYSJ Os02g0793500 OJ1249_F12.33 OsJ_08694 OSNPB_020793500 P0700F06.21 ENOG411EC29 PIP5K3 O48709,A0A1P8AZC9 PI5K3_ARATH,A0A1P8AZC9_ARATH Phosphatidylinositol 4-phosphate 5-kinase 3 (AtPIP5K3) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 3) (Diphosphoinositide kinase 3) (PtdIns(4)P-5-kinase 3),1-phosphatidylinositol-4-phosphate 5-kinase 3 ARA:AT2G26420-MONOMER; R-ATH-1660499;R-ATH-6811558;R-ATH-8856828; 2.7.1.68; 2.7.1.68 80134,81689 Phosphatidylinositol 4-phosphate 5-kinase 3 (AtPIP5K3) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 3) (Diphosphoinositide kinase 3) (PtdIns(4)P-5-kinase 3),1-phosphatidylinositol-4-phosphate 5-kinase 3 apical plasma membrane [GO:0016324]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524]; regulation of establishment of cell polarity [GO:2000114]; root hair cell tip growth [GO:0048768]; root hair elongation [GO:0048767]; root hair initiation [GO:0048766],1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524] locus:2066246; AT2G26420 PIPKc NA NA NA NA NA NA NA ENOG411EC2T ESM1 Q9LJG3,Q9LMS5,A0A1I9LQL1 ESM1_ARATH,GDL3_ARATH,A0A1I9LQL1_ARATH GDSL esterase/lipase ESM1 (EC 3.1.1.-) (Extracellular lipase ESM1) (Protein EPITHIOSPECIFIER MODIFIER 1) (AtESM1),GDSL esterase/lipase At1g18120 (EC 3.1.1.-) (Extracellular lipase At1g18120),GDSL-like lipase/acylhydrolase superfamily protein DISRUPTION PHENOTYPE: In cv. Columbia, altered ratio of endogenous nitrile to isothiocyanate hydrolysis products. {ECO:0000269|PubMed:16679459}. Has significantly higher ratio of nitrile and lower ratio of isothiocyanate. Has less damage by T. ni compared to the wild type Col-0. Low nitrile levels; Heterozygotes: Intermediate phenotype-D. Kliebenstein-2006 FUNCTION: Represses or inhibits nitriles production from methionine-derived and from indol-3-ylmethyl glucosinolates. Favors isothiocyanate production. {ECO:0000269|PubMed:16679459, ECO:0000269|PubMed:17920088}. MISCELLANEOUS: ESM1 is highly expressed in cv. Columbia while lowly expressed in cv. Landsberg erecta. 3.1.1.- 44060,28969,30309 GDSL esterase/lipase ESM1 (EC 3.1.1.-) (Extracellular lipase ESM1) (Protein EPITHIOSPECIFIER MODIFIER 1) (AtESM1),GDSL esterase/lipase At1g18120 (EC 3.1.1.-) (Extracellular lipase At1g18120),GDSL-like lipase/acylhydrolase superfamily protein apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; defense response to bacterium [GO:0042742]; glucosinolate catabolic process [GO:0019762]; lipid catabolic process [GO:0016042]; response to cold [GO:0009409]; response to insect [GO:0009625],extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2087502; AT3G14210,AT1G18120 epithiospecifier modifier NA NA NA NA NA NA NA ENOG411EC2U F26K9_210 Q9LZI7 Q9LZI7_ARATH At3g62780 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Shock protein SRC2-like) 32205 At3g62780 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Shock protein SRC2-like) locus:2081745; AT3G62780 C2 domain NA NA NA NA NA NA NA ENOG411EC2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3657) Os11g0167500 protein A0A0P0XZ90 A0A0P0XZ90_ORYSJ Os11g0167500 OSNPB_110167500 ENOG411EC2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase Os12g0459300 protein,Os02g0528500 protein,Os03g0429900 protein,Os12g0511750 protein (Fragment),Os10g0377500 protein (Fragment) C7JAC1,A0A0P0VJU3,A0A0P0VYY5,A0A0P0YAN1,A0A0P0XTI3 C7JAC1_ORYSJ,A0A0P0VJU3_ORYSJ,A0A0P0VYY5_ORYSJ,A0A0P0YAN1_ORYSJ,A0A0P0XTI3_ORYSJ Os12g0459300 Os12g0459300 OSNPB_120459300,Os02g0528500 OSNPB_020528500,Os03g0429900 OSNPB_030429900,Os12g0511750 OSNPB_120511750,Os10g0377500 OSNPB_100377500 ENOG411EC2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PHOsphatase NA NA NA NA NA NA NA ENOG411EC2G Q9LZF0 Q9LZF0_ARATH At5g03390 (Uncharacterized protein At5g03390) (Uncharacterized protein F12E4_130) 42140 At5g03390 (Uncharacterized protein At5g03390) (Uncharacterized protein F12E4_130) chloroplast [GO:0009507] locus:2142629; AT5G03390 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EC2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Mannan endo-14-beta-mannosidase NA NA NA NA NA NA NA ENOG411EC2B UBC3 P42746 UBC3_ARATH Ubiquitin-conjugating enzyme E2 3 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 3) (Ubiquitin carrier protein 3) (Ubiquitin-conjugating enzyme E2-17 kDa 3) (Ubiquitin-protein ligase 3) This mutant and the ubc1 ubc3 double mutant flower at the same time as wild type plants but a ubc1 ubc2 ubc3 triple mutant is dwarfed sterile and bushier than wild type plants. FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. R-ATH-983168; 2.3.2.23 17137 Ubiquitin-conjugating enzyme E2 3 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 3) (Ubiquitin carrier protein 3) (Ubiquitin-conjugating enzyme E2-17 kDa 3) (Ubiquitin-protein ligase 3) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; DNA repair [GO:0006281]; histone ubiquitination [GO:0016574]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in all tissues examined. Lower levels found in leaves. {ECO:0000269|PubMed:8790283}. locus:2154104; AT5G62540 ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EC2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN NA NA NA NA NA NA NA ENOG411EC2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EC2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411EC2M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411EC2J TET11 Q9LPR6 TET11_ARATH Tetraspanin-11 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 29825 Tetraspanin-11 integral component of membrane [GO:0016021] locus:2014054; AT1G18520 Tetraspanin family NA NA NA NA NA NA NA ENOG411EC2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CW-type Zinc Finger NA NA NA NA NA NA NA ENOG411EC2H MEB1 Q8W4P8,A0A1P8B7E1,A0A1P8B7C6 MEB1_ARATH,A0A1P8B7E1_ARATH,A0A1P8B7C6_ARATH Membrane protein of ER body 1,Vacuolar iron transporter (VIT) family protein DISRUPTION PHENOTYPE: No visible phenotype and no effect on pathogen sensitivity. {ECO:0000269|PubMed:23166355}. FUNCTION: May sequester excess cytosolic iron and manganese into endoplasmic reticulum to reduce metal ion toxicity. Not essential for the accumulation of ER body components, including PYK10. {ECO:0000269|PubMed:23166355}. 68170,69162,69004 Membrane protein of ER body 1,Vacuolar iron transporter (VIT) family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; ER body [GO:0010168]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to iron ion [GO:0071281]; intracellular sequestering of iron ion [GO:0006880],integral component of membrane [GO:0016021] locus:2137375; AT4G27860 VIT family NA NA NA NA NA NA NA ENOG411E933 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13-beta-glucan synthase component NA NA NA NA NA NA NA ENOG411E932 Q1PF03,Q1PE30,A0A1P8B5B9 Q1PF03_ARATH,Q1PE30_ARATH,A0A1P8B5B9_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Protein kinase family protein),Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 87618,84570,73962 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Protein kinase family protein),Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950]; root epidermal cell differentiation [GO:0010053],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672] locus:2061012;,locus:2128131; AT2G24370,AT4G31230 kinase family NA NA NA NA NA NA NA ENOG411E931 ATHB-23 Q8LFD3 ATB23_ARATH Homeobox-leucine zipper protein ATHB-23 (HD-ZIP protein ATHB-23) (Homeodomain transcription factor ATHB-23) FUNCTION: Probable transcription factor. {ECO:0000250}. 29663 Homeobox-leucine zipper protein ATHB-23 (HD-ZIP protein ATHB-23) (Homeodomain transcription factor ATHB-23) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in young leaves, in the adaxial domain of leaf primordia and the rib meristem. Expressed in the styles of flowers and siliques. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:17387478}. locus:2202795; AT1G26960 Homeobox associated leucine zipper NA NA NA NA NA NA NA ENOG411E930 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DegT/DnrJ/EryC1/StrS aminotransferase family NA NA NA NA NA NA NA ENOG411E937 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E936 MNF13.24 Q9FM30 Q9FM30_ARATH Galactose oxidase/kelch repeat superfamily protein (Similarity to unknown protein) 47388 Galactose oxidase/kelch repeat superfamily protein (Similarity to unknown protein) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2168738; AT5G40680 Kelch repeat-containing NA NA NA NA NA NA NA ENOG411E935 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E934 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Expressed protein (Os11g0618500 protein) (cDNA clone:J013091I08, full insert sequence) (cDNA clone:J013146L08, full insert sequence),Os11g0618800 protein Q2R146,A0A0P0Y4I8 Q2R146_ORYSJ,A0A0P0Y4I8_ORYSJ Os11g0618500 LOC_Os11g40390 Os11g0618500 OSNPB_110618500,Os11g0618800 OSNPB_110618800 ENOG411E939 Q9SL82 Q9SL82_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Putative pathogenesis-related protein) 18581 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Putative pathogenesis-related protein) integral component of membrane [GO:0016021] locus:2061678; AT2G19980 SCP NA NA NA NA NA NA NA ENOG411E938 HTT2,HTT1,HTT3,HTT4,HTT5,HEAT-INDUCED TAS1 TARGET 3,HEAT-INDUCED TAS1 TARGET 2,HEAT-INDUCED TAS1 TARGET 4 Q9FJF8,Q8LFW5,F4KIH4,Q9SU75,Q8RY97,A0A1P8AUY9,A0A1P8B9V0,F4HWT6,A0A1P8B9L8,A0A1P8B433 HTT2_ARATH,HTT1_ARATH,HTT3_ARATH,HTT4_ARATH,HTT5_ARATH,A0A1P8AUY9_ARATH,A0A1P8B9V0_ARATH,F4HWT6_ARATH,A0A1P8B9L8_ARATH,A0A1P8B433_ARATH Protein HEAT-INDUCED TAS1 TARGET 2,Protein HEAT-INDUCED TAS1 TARGET 1,Protein HEAT-INDUCED TAS1 TARGET 3,Protein HEAT-INDUCED TAS1 TARGET 4,Protein HEAT-INDUCED TAS1 TARGET 5,Target of trans acting-siR480/255 protein FUNCTION: Mediates both basal and acquired thermotolerance via HSFA1s-directed pathways (e.g. HSFA1A, HSFA1B, and HSFA1D). Triggers the expression of HSFA1A and HSFA1B. {ECO:0000269|PubMed:24728648}.,FUNCTION: Mediates both basal and acquired thermotolerance. {ECO:0000250|UniProtKB:Q8LFW5}. 28550,31130,14370,31149,19854,25790,26233,20810 Protein HEAT-INDUCED TAS1 TARGET 2,Protein HEAT-INDUCED TAS1 TARGET 1,Protein HEAT-INDUCED TAS1 TARGET 3,Protein HEAT-INDUCED TAS1 TARGET 4,Protein HEAT-INDUCED TAS1 TARGET 5,Target of trans acting-siR480/255 protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; heat acclimation [GO:0010286]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to oxidative stress [GO:0006979],cytoplasm [GO:0005737]; nucleus [GO:0005634]; heat acclimation [GO:0010286]; response to heat [GO:0009408],cytoplasm [GO:0005737]; nucleus [GO:0005634]; heat acclimation [GO:0010286]; response to cold [GO:0009409]; response to heat [GO:0009408] TISSUE SPECIFICITY: Expressed ubiquitously, including in seedlings, leaves, stems, inflorescences and siliques. {ECO:0000269|PubMed:24728648}.,TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, inflorescences and siliques. {ECO:0000269|PubMed:24728648}. locus:2161568;,locus:2123864;,locus:504954875;,locus:2134448;,locus:2017617;,locus:2023802; AT5G18040,AT4G29770,AT5G18065,AT4G29760,AT1G51670,AT1G48180 NA NA NA NA NA NA NA NA ENOG411E93C FPP6 Q9C698,F4HV50 FPP6_ARATH,F4HV50_ARATH Filament-like plant protein 6 (AtFPP6),Filament-like protein (DUF869) 118540,118247 Filament-like plant protein 6 (AtFPP6),Filament-like protein (DUF869) plasma membrane [GO:0005886] locus:2204990; AT1G47900 Plant protein of unknown function (DUF869) NA NA NA NA NA NA NA ENOG411E93B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E93A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411E93G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E93F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os04g0329500 protein,Os04g0329800 protein,Os04g0316800 protein,Os04g0329650 protein,Os04g0317300 protein,Os04g0329500 protein (Fragment) Q0JE46,A0A0P0W994,A0A0P0W8F0,A0A0P0W8Y8,A0A0P0W8E7,A0A0P0W949 Q0JE46_ORYSJ,A0A0P0W994_ORYSJ,A0A0P0W8F0_ORYSJ,A0A0P0W8Y8_ORYSJ,A0A0P0W8E7_ORYSJ,A0A0P0W949_ORYSJ Os04g0329500 Os04g0329500 OSNPB_040329500,Os04g0329800 OSNPB_040329800,Os04g0316800 OSNPB_040316800,Os04g0329650 OSNPB_040329650,Os04g0317300 OSNPB_040317300,Os04g0329500 OSNPB_040329500 ENOG411E93E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CH NA NA NA NA NA NA NA ENOG411E93D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E93K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone acetyltransferase NA NA NA NA NA NA NA ENOG411E93J F11F8_12 Q9SF49,A0A1I9LQU1,A0A1I9LQU2 Q9SF49_ARATH,A0A1I9LQU1_ARATH,A0A1I9LQU2_ARATH Pectate lyase (EC 4.2.2.2),Pectin lyase-like superfamily protein PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. ARA:AT3G09540-MONOMER; 4.2.2.2 41470,31058,41004 Pectate lyase (EC 4.2.2.2),Pectin lyase-like superfamily protein metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490],lyase activity [GO:0016829] locus:2074999; AT3G09540 Pectate lyase NA NA NA NA NA NA NA ENOG411E93H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E93N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E93M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1605 Os10g0471350 protein A0A0P0XV93 A0A0P0XV93_ORYSJ Os10g0471350 OSNPB_100471350 ENOG411E93S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIG1 family Os04g0441600 protein A0A0P0WAT9 A0A0P0WAT9_ORYSJ Os04g0441600 OSNPB_040441600 ENOG411E93R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0601500 protein,Os02g0186100 protein,Os02g0601400 protein,Os02g0185400 protein (Fragment) Q0DZS4,Q0E3A6,B9F0X6,A0A0P0VFQ1 Q0DZS4_ORYSJ,Q0E3A6_ORYSJ,B9F0X6_ORYSJ,A0A0P0VFQ1_ORYSJ Os02g0601500 Os02g0601500 OSNPB_020601500,Os02g0186100 Os02g0186100 OSNPB_020186100,Os02g0601400 OsJ_07412 OSNPB_020601400,Os02g0185400 OSNPB_020185400 ENOG411E93Q Q6NQ63 Q6NQ63_ARATH At1g01440 74071 At1g01440 locus:2035307; AT1G01440 Protein of unknown function (DUF3133) NA NA NA NA NA NA NA ENOG411E93P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein kinase Os01g0870400 protein (Putative S-domain receptor-like protein kinase),Os01g0870500 protein (Fragment),Os01g0871000 protein (Fragment) Q5N9Y5,A0A0P0VAW8,A0A0P0VAV4 Q5N9Y5_ORYSJ,A0A0P0VAW8_ORYSJ,A0A0P0VAV4_ORYSJ P0039A07.14 Os01g0870400 OSNPB_010870400,Os01g0870500 OSNPB_010870500,Os01g0871000 OSNPB_010871000 ENOG411E93W MRH10.15 Q9FNC2 Q9FNC2_ARATH At5g44040 (Eisosome SEG2-like protein) (Gb|AAD10667.1) (Uncharacterized protein At5g44040) 47047 At5g44040 (Eisosome SEG2-like protein) (Gb|AAD10667.1) (Uncharacterized protein At5g44040) locus:2172467; AT5G44040 NA NA NA NA NA NA NA NA ENOG411E93V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: HEAT repeat containing 2 NA NA NA NA NA NA NA ENOG411E93U ; Q9FFU7,Q9LJ48 FBL90_ARATH,FB191_ARATH Putative F-box/LRR-repeat protein At5g54820,Putative F-box protein At3g29830 54085,53970 Putative F-box/LRR-repeat protein At5g54820,Putative F-box protein At3g29830 locus:2160205; AT5G54820,AT3G29830 f-box family NA NA NA NA NA NA NA ENOG411E93T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411E93Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjC NA NA NA NA NA NA NA ENOG411E93Y ELM2 Q9LMG9,A0A1P8AUG1,A0A1P8AUH7 Q9LMG9_ARATH,A0A1P8AUG1_ARATH,A0A1P8AUH7_ARATH At1g13880 (ELM2 domain-containing protein) (F16A14.9) (Uncharacterized protein At1g13880),ELM2 domain-containing protein 48429,49653,48500 At1g13880 (ELM2 domain-containing protein) (F16A14.9) (Uncharacterized protein At1g13880),ELM2 domain-containing protein locus:2014879; AT1G13880 ELM2 domain-containing protein NA NA NA NA NA NA NA ENOG411E93X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting protein kinase NA NA NA NA NA NA NA ENOG411DUGA TIF3H1 Q9C5Z2 EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H (eIF3h) (Eukaryotic translation initiation factor 3 subunit 3) (eIF-3-gamma) (eIF3 p38 subunit) DISRUPTION PHENOTYPE: Pleiotropic growth defects throughout development including postembryonic growth retardation, and delayed shoot and root growth, flowering, and senescence. Lethal at 80 percent at the vegetative rosettes stage. Reduced fertility. Compromised translation efficiency of specific 5' mRNA leader sequences. Requires exogenous sugar to transit from seedling to vegetative development, but hypersensitive to elevated levels of exogenous sugars (e.g. sucrose, maltose and glucose). Enhanced sensitivity to abscisic acid (ABA) (PubMed:15548739). Impaired uORF-RNAs polysomal association (PubMed:23524850). {ECO:0000269|PubMed:15548739, ECO:0000269|PubMed:23524850}. High penetrance of rosette lethality; Abnormal cotyledon number and morphology; Warped leaves; Short primary root; Low penetrance of pin-formed inflorescences; Increased branching; Abnormal silique morphology; Few root hairs-A. von Arnim-2004 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (Potential). Regulates translation initiation of specific 5' mRNAs harboring multiple upstream open reading frames (uORFs) in their 5' leader sequence (e.g. BETA-OHASE 2 and LHY) (PubMed:15548739, PubMed:17439654, PubMed:23524850). {ECO:0000255|HAMAP-Rule:MF_03007, ECO:0000269|PubMed:15548739, ECO:0000269|PubMed:17439654, ECO:0000269|PubMed:23524850}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 38373 Eukaryotic translation initiation factor 3 subunit H (eIF3h) (Eukaryotic translation initiation factor 3 subunit 3) (eIF-3-gamma) (eIF3 p38 subunit) cytosol [GO:0005829]; eukaryotic translation initiation factor 3 complex [GO:0005852]; polysomal ribosome [GO:0042788]; translation initiation factor activity [GO:0003743]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of translational initiation [GO:0045948]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to glucose [GO:0009749]; response to maltose [GO:0034286]; response to sucrose [GO:0009744] TISSUE SPECIFICITY: Mostly expressed in roots and flowers, and, to a lower extent, in leaves, stems and siliques. {ECO:0000269|PubMed:15548739}. locus:2196469; AT1G10840 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Eukaryotic translation initiation factor 3 subunit H (eIF3h),Os04g0376500 protein (Fragment) Q7XMI6,A0A0P0W992 Q7XMI6_ORYSJ,A0A0P0W992_ORYSJ Os04g0376500 OsJ_14495 OSJNBb0006N15.13 OSNPB_040376500,Os04g0376500 OSNPB_040376500 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03007}. ENOG411DUGC Q9SL47,A0A1P8B2U2,A0A1P8B2T5,F4JPL8,F4JPL7 Q9SL47_ARATH,A0A1P8B2U2_ARATH,A0A1P8B2T5_ARATH,F4JPL8_ARATH,F4JPL7_ARATH At2g17990 (Polyamine-modulated factor 1-binding protein) (Uncharacterized protein At2g17990),Polyamine-modulated factor 1-binding protein 38270,36005,39452,27191,27942 At2g17990 (Polyamine-modulated factor 1-binding protein) (Uncharacterized protein At2g17990),Polyamine-modulated factor 1-binding protein nucleus [GO:0005634] locus:2060944;,locus:505006563; AT2G17990,AT4G36105 Calcium-dependent protein kinase CPK1 adapter protein Calcium-dependent protein kinase CPK1 adapter protein 2-like (Os06g0715400 protein) Q5Z9P7 Q5Z9P7_ORYSJ Os06g0715400 Os06g0715400 OSNPB_060715400 P0481E08.14 ENOG411DUGD RH47,pentatricopeptide repeat 3 Q6NQ83,Q0WKV3,Q9ASZ8,Q8W4E1,A0A1I9LRQ7 PP247_ARATH,PPR36_ARATH,PPR37_ARATH,RH47_ARATH,A0A1I9LRQ7_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial,Pentatricopeptide repeat-containing protein At1g12300, mitochondrial,Pentatricopeptide repeat-containing protein At1g12620,DEAD-box ATP-dependent RNA helicase 47, mitochondrial (EC 3.6.4.13) (Protein EMBRYO DEFECTIVE 1586) (Protein INCREASED SIZE EXCLUSION LIMIT 1),Pentatricopeptide repeat (PPR) superfamily protein DISRUPTION PHENOTYPE: Embryogenesis mostly arrested at globular stage and cotyledon stage. Altered size exclusion limit of PD; abnormally maintained dilated PD at the torpedo stage and increased formation of secondary branched PD. Chlorosis (PubMed:11779812, PubMed:11874921, PubMed:19805190, PubMed:20434343). Altered plastid development (PubMed:22106293). {ECO:0000269|PubMed:11779812, ECO:0000269|PubMed:11874921, ECO:0000269|PubMed:19805190, ECO:0000269|PubMed:20434343, ECO:0000269|PubMed:22106293}. mutants typically arrest before the mid-torpedo stage Embryo defective; Globular-D. Meinke-2002 FUNCTION: Essential protein required during embryogenesis. Required for mitochondrial metabolism. Necessary for normal plasmodesmata (PD) development and aperture regulation. {ECO:0000269|PubMed:11779812, ECO:0000269|PubMed:11874921, ECO:0000269|PubMed:19805190, ECO:0000269|PubMed:20434343}. 3.6.4.13 69104,71478,69633,60718,66284 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial,Pentatricopeptide repeat-containing protein At1g12300, mitochondrial,Pentatricopeptide repeat-containing protein At1g12620,DEAD-box ATP-dependent RNA helicase 47, mitochondrial (EC 3.6.4.13) (Protein EMBRYO DEFECTIVE 1586) (Protein INCREASED SIZE EXCLUSION LIMIT 1),Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mitochondrial mRNA processing [GO:0090615],mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],mitochondrion [GO:0005739]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; plasmodesma organization [GO:0009663]; plasmodesmata-mediated intercellular transport [GO:0010497]; RNA secondary structure unwinding [GO:0010501] TISSUE SPECIFICITY: Mostly expressed in leaves and flowers, and, to a lower extent, in roots, seedlings and siliques, especially in meristematic regions. {ECO:0000269|PubMed:19805190}. locus:2077061;,locus:2034760;,locus:2195047;,locus:2010306; AT3G22470,AT1G12300,AT1G12620,AT1G12770 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 47B (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 47A (EC 3.6.4.13) Q10PV9,Q6H874 RH47B_ORYSJ,RH47A_ORYSJ Os03g0219700 LOC_Os03g12000 OsJ_09947,Os02g0636300 LOC_Os02g42406 OJ1581_H9.6 OsJ_07650 ENOG411DUGG Q9T034,F4JVC5 SYFA_ARATH,F4JVC5_ARATH Phenylalanine--tRNA ligase alpha subunit, cytoplasmic (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase alpha subunit) (PheRS),Phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase ARA:AT4G39280-MONOMER; 6.1.1.20 55792,55778 Phenylalanine--tRNA ligase alpha subunit, cytoplasmic (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase alpha subunit) (PheRS),Phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase cytosol [GO:0005829]; phenylalanine-tRNA ligase complex [GO:0009328]; ATP binding [GO:0005524]; phenylalanine-tRNA ligase activity [GO:0004826]; tRNA binding [GO:0000049]; phenylalanyl-tRNA aminoacylation [GO:0006432],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; phenylalanine-tRNA ligase activity [GO:0004826]; tRNA binding [GO:0000049]; phenylalanyl-tRNA aminoacylation [GO:0006432] locus:2136328; AT4G39280 phenylalanyl-tRNA synthetase alpha Os10g0400800 protein (Phenylalanyl-tRNA synthetase alpha chain, putative, expressed) (cDNA clone:J013129C16, full insert sequence),Os10g0400800 protein (Fragment) Q338I8,A0A0N7KRR3 Q338I8_ORYSJ,A0A0N7KRR3_ORYSJ Os10g0400800 LOC_Os10g26130 OsJ_31442 OSNPB_100400800,Os10g0400800 OSNPB_100400800 ENOG411DUGK GAUT3 Q0WQD2,F4JTM2 GAUT3_ARATH,F4JTM2_ARATH Probable galacturonosyltransferase 3 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: No changes in the cell wall content. {ECO:0000269|PubMed:19825675}. FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis.,PATHWAY: Glycan metabolism; pectin biosynthesis. {ECO:0000256|RuleBase:RU362027}. 2.4.1.- 77771,77386 Probable galacturonosyltransferase 3 (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489],Golgi membrane [GO:0000139]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:2121753; AT4G38270 Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-) (Fragment),Os10g0363100 protein (Fragment),Hexosyltransferase (EC 2.4.1.-) A0A0P0XTD9,A0A0P0XT83,A0A0P0X171 A0A0P0XTD9_ORYSJ,A0A0P0XT83_ORYSJ,A0A0P0X171_ORYSJ Os10g0363100 OSNPB_100363100,Os06g0727300 OSNPB_060727300 ENOG411DUGM O49558 PP331_ARATH Pentatricopeptide repeat-containing protein At4g21170 67092 Pentatricopeptide repeat-containing protein At4g21170 intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2127363; AT4G21170 repeat-containing protein NA NA NA NA NA NA NA ENOG411DUGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1191) Os04g0580500 protein A0A0P0WDW9 A0A0P0WDW9_ORYSJ Os04g0580500 OSNPB_040580500 ENOG411DUGP A0A1I9LQ21,F4JD48 A0A1I9LQ21_ARATH,F4JD48_ARATH Sulfatase and phosphatidylinositolglycan class N domain-containing protein R-ATH-162710; 112926,96787 Sulfatase and phosphatidylinositolglycan class N domain-containing protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; transferase activity [GO:0016740]; GPI anchor biosynthetic process [GO:0006506],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mannose-ethanolamine phosphotransferase activity [GO:0051377]; sulfuric ester hydrolase activity [GO:0008484]; GPI anchor biosynthetic process [GO:0006506] locus:2096677; AT3G01380 GPI ethanolamine phosphate transferase Os02g0581000 protein A0A0P0VKT4 A0A0P0VKT4_ORYSJ Os02g0581000 OSNPB_020581000 ENOG411DUGQ MEE21 Q8L8C2 Q8L8C2_ARATH PIN domain-like family protein (Uncharacterized protein At2g34570/T31E10.9) 31786 PIN domain-like family protein (Uncharacterized protein At2g34570/T31E10.9) nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; small ribosomal subunit rRNA binding [GO:0070181]; embryo development ending in seed dormancy [GO:0009793]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2062303; AT2G34570 RRNA-processing protein UTP23 Os02g0468200 protein (cDNA clone:J033143I02, full insert sequence) Q6K7A6 Q6K7A6_ORYSJ Os02g0468200 OJ1057_F01.2 OJ1342_D02.35 OsJ_06675 OSNPB_020468200 ENOG411DUGS CYP724A1 A0A1P8BDE8,A0A1P8BDE6,A0A1P8BDE1,F4K6S3 A0A1P8BDE8_ARATH,A0A1P8BDE6_ARATH,A0A1P8BDE1_ARATH,F4K6S3_ARATH Cytochrome P450, family 724, subfamily A, polypeptide 1 R-ATH-211916;R-ATH-5365859; 48316,44589,37663,42266 Cytochrome P450, family 724, subfamily A, polypeptide 1 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],endoplasmic reticulum [GO:0005783]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; steroid 22-alpha hydroxylase activity [GO:0010012]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] locus:2145738; AT5G14400 cytochrome P450 Cytochrome P450 724B1 (EC 1.14.-.-) (Dwarf protein 11) (OsDWARF11),Os04g0469800 protein Q6F4F5,A0A0N7KJ75 C724B_ORYSJ,A0A0N7KJ75_ORYSJ CYP724B1 D11 Os04g0469800 LOC_Os04g39430 OsJ_15129 OSJNBa0016O02.25,Os04g0469800 OSNPB_040469800 DISRUPTION PHENOTYPE: The dwarf11 (d11) mutant shows the erection of leaves in mature stages, the shortening of the grain length and of the second internode in culm, and aberrant skotomorphogenesis. Treatment with exogenous brassinolide rescues the abnormal phenotype. {ECO:0000269|PubMed:15705958}. FUNCTION: Involved in brassinosteroid biosynthesis. May catalyze a C6-oxidation step and may be involved to supply 6-deoxotyphasterol and typhasterol. Involved in internode elongation and seed development. {ECO:0000269|PubMed:15705958}. ENOG411DUGT ABCB29 Q9LZB8 AB29B_ARATH ABC transporter B family member 29, chloroplastic (ABC transporter ABCB.29) (AtABCB29) (ABC2 homolog 12) ARA:AT5G03910-MONOMER; 69198 ABC transporter B family member 29, chloroplastic (ABC transporter ABCB.29) (AtABCB29) (ABC2 homolog 12) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215] locus:2150575; AT5G03910 ABC transporter B family member 29 Os04g0413000 protein A0A0P0WA26 A0A0P0WA26_ORYSJ Os04g0413000 OSNPB_040413000 ENOG411DUGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DUGW LOX6,LOX3,LOX4 Q9CAG3,Q9LNR3,Q9FNX8 LOX6_ARATH,LOX3_ARATH,LOX4_ARATH Lipoxygenase 6, chloroplastic (AtLOX6) (EC 1.13.11.12),Lipoxygenase 3, chloroplastic (AtLOX3) (EC 1.13.11.12),Lipoxygenase 4, chloroplastic (AtLOX4) (EC 1.13.11.12) (LOX3-like protein) FUNCTION: Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure (By similarity). 13S-lipoxygenase that can use linolenic acid as substrates. {ECO:0000255|PROSITE-ProRule:PRU00726, ECO:0000269|PubMed:18949503}.,FUNCTION: 13S-lipoxygenase that can use linolenic acid as substrates. Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure (By similarity). {ECO:0000250, ECO:0000269|PubMed:18949503}. PATHWAY: Lipid metabolism; oxylipin biosynthesis. {ECO:0000255|PROSITE-ProRule:PRU00726}. R-ATH-2142691;R-ATH-2142696;R-ATH-2142700;R-ATH-2142712;R-ATH-2142770;R-ATH-6798695; 1.13.11.12; 1.13.11.12 104516,103726,104814 Lipoxygenase 6, chloroplastic (AtLOX6) (EC 1.13.11.12),Lipoxygenase 3, chloroplastic (AtLOX3) (EC 1.13.11.12),Lipoxygenase 4, chloroplastic (AtLOX4) (EC 1.13.11.12) (LOX3-like protein) chloroplast [GO:0009507]; plasma membrane [GO:0005886]; linoleate 13S-lipoxygenase activity [GO:0016165]; metal ion binding [GO:0046872]; jasmonic acid biosynthetic process [GO:0009695]; lipid oxidation [GO:0034440]; oxylipin biosynthetic process [GO:0031408]; response to wounding [GO:0009611],chloroplast [GO:0009507]; linoleate 13S-lipoxygenase activity [GO:0016165]; metal ion binding [GO:0046872]; anther dehiscence [GO:0009901]; anther development [GO:0048653]; lipid oxidation [GO:0034440]; oxylipin biosynthetic process [GO:0031408]; pollen development [GO:0009555]; response to fungus [GO:0009620]; response to high light intensity [GO:0009644]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; stamen filament development [GO:0080086],chloroplast [GO:0009507]; linoleate 13S-lipoxygenase activity [GO:0016165]; metal ion binding [GO:0046872]; anther dehiscence [GO:0009901]; anther development [GO:0048653]; lipid oxidation [GO:0034440]; oxylipin biosynthetic process [GO:0031408]; pollen development [GO:0009555]; response to bacterium [GO:0009617]; response to ozone [GO:0010193]; response to wounding [GO:0009611]; stamen filament development [GO:0080086] DEVELOPMENTAL STAGE: First observed in lateral root primordia (LRP), from the first pericycle divisions. Later expressed in lateral roots. Expression is greatly increased in leaves during leaf senescence. {ECO:0000269|PubMed:11891244, ECO:0000269|PubMed:17369372}.,DEVELOPMENTAL STAGE: Expression is greatly increased in leaves during leaf senescence. {ECO:0000269|PubMed:11891244}. TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:17369372}.,TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:17369372}. locus:2008808;,locus:2018848;,locus:2030215; AT1G67560,AT1G17420,AT1G72520 Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development pest resistance and senescence or responses to wounding (By similarity) Putative lipoxygenase 5 (EC 1.13.11.12),Probable lipoxygenase 6 (EC 1.13.11.12),Os03g0179900 protein (Fragment),Lipoxygenase (EC 1.13.11.-) (Fragment) Q7XV13,Q8H016,A0A0P0VTW1,A0A0P0WB12 LOX5_ORYSJ,LOX6_ORYSJ,A0A0P0VTW1_ORYSJ,A0A0P0WB12_ORYSJ Os04g0447100 LOC_Os04g37430 OSJNBa0064H22.1,Os03g0179900 LOC_Os03g08220 OSJNBa0050H14.14 OSJNBb0076N15.1,Os03g0179900 OSNPB_030179900,Os04g0447100 OSNPB_040447100 FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure (By similarity). {ECO:0000250}.,FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. {ECO:0000256|RuleBase:RU003975}. ENOG411DUGY DEK1 Q8RVL2,F4I0A4 DEK1_ARATH,F4I0A4_ARATH Calpain-type cysteine protease DEK1 (EC 3.4.22.-) (Phytocalpain DEK1) (Protein DEFECTIVE KERNEL 1) (AtDEK1) (Protein EMBRYO DEFECTIVE 1275) (Protein EMBRYO DEFECTIVE 80),Calpain-type cysteine protease family DISRUPTION PHENOTYPE: Defective embryo arrested at preglobular/globular stage. Disturbed endosperm lacking the aleurone-like peripheral cell layer and unorganized embryo development displaying irregular mitotic divisions in the embryo proper and suspensor. In a partially disrupted phenotype, impaired meristems organization characterized by vacuolated cells, abnormal cotyledon epiderm made of chloroplast-containing cells, and radialized leaves. {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:15647902, ECO:0000269|PubMed:16167900, ECO:0000269|PubMed:17933905, ECO:0000269|PubMed:18952779, ECO:0000269|PubMed:19812694}. Severity of the phenotype varied between individual mutant seed. In the most severely affected seed no embryo development could be detected. In such seeds the endosperm develops and cellularizes but fails to differentiate a complete peripheral (aleurone-like) surface layer. In less severe mutant seed embryos develop to the globular stage before developmental arrest. In these embryos the plane of cell division is frequently uncontrolled compared to wild-type the embryo proper is irregular lacking a well defined L1 cell layer. In mutant seed developing an embryo the endosperm completes the cellularization process and differentiates an aleurone- like layer in the micropylar chamber around the embryo but this differentiation frequently stops towards the central chamber Wild-type development occurs in about 75% of seeds of the siliques from which mutant seeds were harvested. Null: Embryo defective; Preglobular; Knockdown: Seedling lethal; Fused cotyledons; Epidermal cell defects-D. Meinke-2004 FUNCTION: Essential protease involved in epiderm development. Required for aleurone cell development in the endosperm probably by maintaining and restricting the aleurone and embryonic epidermal L1 cell-layer fates as well as meristems organization. Involved in the maintenance of adaxial/abaxial axis information in developing leaves, probably by regulating cell proliferation and expansion. Does not need calcium ions to be active. Required for the formation of giant cells in sepals by determining cell fate and promoting endoreplication. {ECO:0000269|PubMed:15647902, ECO:0000269|PubMed:16167900, ECO:0000269|PubMed:17933905, ECO:0000269|PubMed:18952779, ECO:0000269|PubMed:23095885}. MISCELLANEOUS: Although homology to other calpains is high within the protease domain, the lack of calcium-binding sites suggests that this protein is a protease that may not be activated by calcium ions. R-ATH-1474228;R-ATH-6798695; 3.4.22.- 238264,241729 Calpain-type cysteine protease DEK1 (EC 3.4.22.-) (Phytocalpain DEK1) (Protein DEFECTIVE KERNEL 1) (AtDEK1) (Protein EMBRYO DEFECTIVE 1275) (Protein EMBRYO DEFECTIVE 80),Calpain-type cysteine protease family cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; endosome membrane [GO:0010008]; integral component of plasma membrane [GO:0005887]; calcium-dependent cysteine-type endopeptidase activity [GO:0004198]; cysteine-type peptidase activity [GO:0008234]; embryo development ending in seed dormancy [GO:0009793]; plant epidermal cell fate specification [GO:0090628]; positive regulation of DNA endoreduplication [GO:0032877]; regulation of adaxial/abaxial pattern formation [GO:2000011]; regulation of cell growth [GO:0001558]; regulation of cell proliferation [GO:0042127]; regulation of endosperm development [GO:2000014]; regulation of leaf development [GO:2000024]; regulation of meristem structural organization [GO:0009934]; self proteolysis [GO:0097264]; sepal giant cell differentiation [GO:0090392],cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calcium-dependent cysteine-type endopeptidase activity [GO:0004198]; cysteine-type endopeptidase activity [GO:0004197]; cell fate specification [GO:0001708]; embryo development ending in seed dormancy [GO:0009793]; regulation of multicellular organism growth [GO:0040014] DEVELOPMENTAL STAGE: Mostly observed in vegetative, inflorescence and floral meristems as well as in young leaf and floral organ primordia. Strongly expressed in developing ovules and during early embryogenesis. Expressed evenly throughout the endosperm and the embryo in developing seed. Present in the embryo proper, but excluded from the suspensor, until the late heart stage, and fades out later, especially in the hypocotyl region, to be present at low levels throughout walking-stick embryos. Accumulates at the margins and in the tips of cotyledons and lateral organs, in the apical meristem, in a subset of cells at the root pole and in a restricted number of cells within the presumptive vasculature of the hypocotyls. Also detected during early endosperm development, prior to cellularization. {ECO:0000269|PubMed:15647902, ECO:0000269|PubMed:16167900}. TISSUE SPECIFICITY: Mostly expressed in meristems and organ primordia. Expressed at low levels in young and germinating seeds at 10 ppm and in seedling roots at 67 ppm. Present in most tissues at a low level. {ECO:0000269|PubMed:11929961, ECO:0000269|PubMed:16167900}. locus:2035676; AT1G55350 CysPc Calpain-type cysteine protease ADL1 (EC 3.4.22.-) (Phytocalpain ADL1) (Protein ADAXIALIZED LEAF1) (Protein DEFECTIVE KERNEL 1) (OsDEK1) (Protein SHOOTLESS 3),Os02g0709400 protein (Fragment) Q6ZFZ4,A0A0P0VNQ1,A0A0P0VNS6,A0A0P0VNU5 DEK1_ORYSJ,A0A0P0VNQ1_ORYSJ,A0A0P0VNS6_ORYSJ,A0A0P0VNU5_ORYSJ ADL1 DEK1 ODM63 SHL3 Os02g0709400 LOC_Os02g47970 OJ1311_H06.4,Os02g0709400 OSNPB_020709400 DISRUPTION PHENOTYPE: Abnormal embryos arrested at the globular stage with an abnormal aleurone layer on the ventral side. {ECO:0000269|PubMed:10409508, ECO:0000269|PubMed:19665012, ECO:0000269|Ref.6}. FUNCTION: Essential protease involved in epiderm development. Required for aleurone cell development in the endosperm probably by maintaining and restricting the aleurone and embryonic epidermal L1 cell-layer fates as well as meristems organization. Involved in the maintenance of adaxial/abaxial axis information in developing leaves, probably by regulating cell proliferation and expansion. Does not need calcium ions to be active. {ECO:0000269|PubMed:10409508, ECO:0000269|PubMed:19665012, ECO:0000269|Ref.6}. MISCELLANEOUS: Although homology to other calpains is high within the protease domain, the lack of calcium-binding sites suggests that this protein is a protease that may not be activated by calcium ions. {ECO:0000250}. ENOG411DUGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0138300 protein,Os10g0137700 protein,F-box domain containing protein, expressed (Os10g0137000 protein) (cDNA clone:001-133-A03, full insert sequence),Os10g0123200 protein,Os05g0320100 protein (cDNA, clone: J090086B10, full insert sequence),F-box domain containing protein, expressed (Os10g0141600 protein) (cDNA clone:001-117-F07, full insert sequence) (cDNA clone:002-139-H12, full insert sequence),F-box domain containing protein, expressed (Os10g0136200 protein),Os10g0139500 protein (Fragment),F-box domain containing protein (F-box domain, putative) (Os11g0166100 protein) (cDNA, clone: J065042I04, full insert sequence),Os10g0188000 protein (Fragment),Os10g0139600 protein,Os10g0141600 protein (Fragment),Os10g0136750 protein Q8VWI8,Q0IZ20,Q33B65,Q0IZ82,B7F9T7,Q7XGY1,Q7XH18,Q10A57,Q0IZ14,Q53KV9,A0A0P0XSB1,A0A0P0XSL8,A0A0P0XRY3,A0A0P0XS98 Q8VWI8_ORYSJ,Q0IZ20_ORYSJ,Q33B65_ORYSJ,Q0IZ82_ORYSJ,B7F9T7_ORYSJ,Q7XGY1_ORYSJ,Q7XH18_ORYSJ,Q10A57_ORYSJ,Q0IZ14_ORYSJ,Q53KV9_ORYSJ,A0A0P0XSB1_ORYSJ,A0A0P0XSL8_ORYSJ,A0A0P0XRY3_ORYSJ,A0A0P0XS98_ORYSJ OSJNAa0087H07.8 Os10g0138300 OSJNBa0029P06.2 OSNPB_100138300,Os10g0137700 Os10g0137700 OsJ_30663 OSNPB_100137700,Os10g0137000 LOC_Os10g04780 Os10g0137000 OSNPB_100137000,Os10g0123200 Os10g0123200 OSNPB_100123200,Os05g0320100 Os05g0320100 OSNPB_050320100,Os10g0141600 LOC_Os10g05200 OSNPB_100141600,Os10g0136200 LOC_Os10g04700 Os10g0136200 OSNPB_100136200,Os10g0136200 LOC_Os10g04700 OSNPB_100136200,Os10g0139500 OSNPB_100139500,Os11g0166100 LOC_Os11g06580 Os11g0166100 OsJ_33090 OSNPB_110166100,Os10g0188000 OSNPB_100188000,Os10g0139600 OSNPB_100139600,Os10g0141600 OSNPB_100141600,Os10g0136750 OSNPB_100136750 ENOG411DUG2 F4INB5,A0A1P8AXK7,F4INB4 F4INB5_ARATH,A0A1P8AXK7_ARATH,F4INB4_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein 106659,105977,106558 P-loop containing nucleoside triphosphate hydrolases superfamily protein cytosol [GO:0005829]; integral component of mitochondrial outer membrane [GO:0031307]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; uridine kinase activity [GO:0004849]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; kinase activity [GO:0016301] locus:2049567; AT2G01460 Phosphoribulokinase / Uridine kinase family Os04g0280200 protein (Fragment) A0A0P0W8V3 A0A0P0W8V3_ORYSJ Os04g0280200 OSNPB_040280200 ENOG411DUG4 WRKY72 Q9LXG8,A0A1P8BDI5 WRK72_ARATH,A0A1P8BDI5_ARATH Probable WRKY transcription factor 72 (WRKY DNA-binding protein 72),WRKY DNA-binding protein 72 Susceptible to fungal infection-T. Eulgem-2010 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 59007,54432 Probable WRKY transcription factor 72 (WRKY DNA-binding protein 72),WRKY DNA-binding protein 72 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2150876; AT5G15130 WRKY transcription factor Os01g0185900 protein (WRKY transcription factor 6-like),Os06g0146250 protein Q5VRX5,A0A0P0WSW3 Q5VRX5_ORYSJ,A0A0P0WSW3_ORYSJ Os01g0185900 OSNPB_010185900 P0510F03.24,Os06g0146250 OSNPB_060146250 ENOG411DUG8 MTP12 Q9SI03,A0A1P8B2X9 MTP12_ARATH,A0A1P8B2X9_ARATH Metal tolerance protein 12 (AtMTP12),Zinc transporter-like protein FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. 33071,69920 Metal tolerance protein 12 (AtMTP12),Zinc transporter-like protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; zinc ion transmembrane transporter activity [GO:0005385]; regulation of sequestering of zinc ion [GO:0061088]; response to zinc ion [GO:0010043]; zinc II ion transmembrane import [GO:0071578],integral component of membrane [GO:0016021]; cation transmembrane transporter activity [GO:0008324] locus:2052311; AT2G04620 cation efflux family protein Metal tolerance protein 8 (OsMTP8),Os08g0422200 protein (Fragment) Q8H329,A0A0P0XFQ1 MTP8_ORYSJ,A0A0P0XFQ1_ORYSJ MTP8 Os08g0422200 LOC_Os08g32650 OSJNBa0077M12.119,Os08g0422200 OSNPB_080422200 FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. ENOG411DUG9 IP5P2 Q9FUR2 IP5P2_ARATH Type I inositol polyphosphate 5-phosphatase 2 (At5PTase2) (EC 3.1.3.56) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:23658066). Alterations in germination and in early seedling growth. Enhanced sensibility to abscisic acid (ABA) with elevated levels of Ins(1,4,5)P3 (PubMed:17237190). {ECO:0000269|PubMed:17237190, ECO:0000269|PubMed:23658066}. FUNCTION: Has phosphatase activity toward Ins(1,4,5)P3 and Ins(1,3,4,5)P4. Seems to be involved in the abscisic acid (ABA) signaling pathway (PubMed:11340187). Could also be able to hydrolyze PtdIns(4,5)P2 and PtdIns(3,4,5)P3 (PubMed:23658066). {ECO:0000269|PubMed:11340187, ECO:0000269|PubMed:23658066}. ARA:AT4G18010-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.56; 3.1.3.56 73579 Type I inositol polyphosphate 5-phosphatase 2 (At5PTase2) (EC 3.1.3.56) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity [GO:0052659]; inositol-1,4,5-trisphosphate 5-phosphatase activity [GO:0052658]; inositol-polyphosphate 5-phosphatase activity [GO:0004445]; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; abscisic acid-activated signaling pathway [GO:0009738]; inositol phosphate dephosphorylation [GO:0046855]; inositol trisphosphate metabolic process [GO:0032957]; phosphatidylinositol dephosphorylation [GO:0046856]; response to abscisic acid [GO:0009737]; seed germination [GO:0009845]; seedling development [GO:0090351] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:17237190}. locus:2141095; AT4G18010 type I inositol-145-trisphosphate 5-phosphatase NA NA NA NA NA NA NA ENOG411EMH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox NA NA NA NA NA NA NA ENOG411EMH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kinesin-associated protein (KAP) NA NA NA NA NA NA NA ENOG411EMH6 PUB42 Q9CAA7,F4HZ08,F4HZ07 PUB42_ARATH,F4HZ08_ARATH,F4HZ07_ARATH Putative U-box domain-containing protein 42 (EC 2.3.2.27) (Plant U-box protein 42) (RING-type E3 ubiquitin transferase PUB42),RING-type E3 ubiquitin transferase (EC 2.3.2.27) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|SAAS:SAAS00771976}. 2.3.2.27 114846,117834,120698 Putative U-box domain-containing protein 42 (EC 2.3.2.27) (Plant U-box protein 42) (RING-type E3 ubiquitin transferase PUB42),RING-type E3 ubiquitin transferase (EC 2.3.2.27) ubiquitin-protein transferase activity [GO:0004842] locus:2205430; AT1G68940 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411EMH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein NA NA NA NA NA NA NA ENOG411EMHJ PUB17 Q9C7R6 PUB17_ARATH U-box domain-containing protein 17 (EC 2.3.2.27) (Plant U-box protein 17) (RING-type E3 ubiquitin transferase PUB17) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000269|PubMed:16531496}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.B10; 2.3.2.27 79834 U-box domain-containing protein 17 (EC 2.3.2.27) (Plant U-box protein 17) (RING-type E3 ubiquitin transferase PUB17) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; defense response, incompatible interaction [GO:0009814]; protein ubiquitination [GO:0016567] locus:2013688; AT1G29340 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411EMHK MZN1.14 Q8LGC7,Q9SGH8 Q8LGC7_ARATH,Q9SGH8_ARATH ARM repeat superfamily protein (Armadillo/beta-catenin repeat family protein),ARM repeat superfamily protein (T13O15.4 protein) 39038,38276 ARM repeat superfamily protein (Armadillo/beta-catenin repeat family protein),ARM repeat superfamily protein (T13O15.4 protein) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2178818;,locus:2096687; AT5G58680,AT3G01400 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411EMHH PUB19,PUB18 O80742,Q9XIJ5 PUB19_ARATH,PUB18_ARATH U-box domain-containing protein 19 (EC 2.3.2.27) (Plant U-box protein 19) (RING-type E3 ubiquitin transferase PUB19),U-box domain-containing protein 18 (EC 2.3.2.27) (Plant U-box protein 18) (RING-type E3 ubiquitin transferase PUB18) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}.,FUNCTION: Functions as an E3 ubiquitin ligase (By similarity). Mediates EXO70B1 ubiquitination. Involved in the regulation of abscisic acid (ABA)-mediated stomatal movements (PubMed:27956469). {ECO:0000250, ECO:0000269|PubMed:27956469}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000269|PubMed:27956469}. 2.3.2.27 76014,76995 U-box domain-containing protein 19 (EC 2.3.2.27) (Plant U-box protein 19) (RING-type E3 ubiquitin transferase PUB19),U-box domain-containing protein 18 (EC 2.3.2.27) (Plant U-box protein 18) (RING-type E3 ubiquitin transferase PUB18) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; regulation of seed germination [GO:0010029],cytoplasm [GO:0005737]; endomembrane system [GO:0012505]; membrane [GO:0016020]; nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; protein ubiquitination [GO:0016567]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of seed germination [GO:0010029]; regulation of stomatal movement [GO:0010119] locus:2195563;,locus:2194564; AT1G60190,AT1G10560 U-box domain-containing protein Os07g0532750 protein Q69IP8 Q69IP8_ORYSJ OSJNBa0039D04.10 Os07g0532750 OSNPB_070532750 ENOG411EMHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein 4-like Os01g0112500 protein (Putative arm repeat-containing protein),Os01g0112500 protein (Fragment) Q9ASI0,A0A0P0UX36 Q9ASI0_ORYSJ,A0A0P0UX36_ORYSJ Os01g0112500 OSJNBb0032H19.10 OSNPB_010112500 P0439B06.36,Os01g0112500 OSNPB_010112500 ENOG411EMHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein Os07g0532700 protein,RING-type E3 ubiquitin transferase (EC 2.3.2.27),OSJNBb0033P05.15 protein (Os04g0326500 protein),Os11g0158450 protein A3BKL9,Q6H4P2,Q7F901,A0A0P0XFL3,A0A0P0XYZ3 A3BKL9_ORYSJ,Q6H4P2_ORYSJ,Q7F901_ORYSJ,A0A0P0XFL3_ORYSJ,A0A0P0XYZ3_ORYSJ Os07g0532700 OsJ_24550 OSNPB_070532700,Os09g0378700 Os09g0378700 OsJ_29174 OSJNBa0041C07.46 OSNPB_090378700 P0027G10.1,Os04g0326500 OsJ_14290 OSJNBb0033P05.15 OSNPB_040326500,Os08g0415600 OSNPB_080415600,Os11g0158450 OSNPB_110158450 ENOG411EMHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein NA NA NA NA NA NA NA ENOG411EMHZ PUB7,PUB45,PUB6 Q9CAG5,Q9C7G1,O48700,A0A1P8ASY0,F4HZI0 PUB7_ARATH,PUB45_ARATH,PUB6_ARATH,A0A1P8ASY0_ARATH,F4HZI0_ARATH U-box domain-containing protein 7 (EC 2.3.2.27) (Plant U-box protein 7) (RING-type E3 ubiquitin transferase PUB7),U-box domain-containing protein 45 (EC 2.3.2.27) (Plant U-box protein 45) (RING-type E3 ubiquitin transferase PUB45),U-box domain-containing protein 6 (EC 2.3.2.27) (Plant U-box protein 6) (RING-type E3 ubiquitin transferase PUB6),RING-type E3 ubiquitin transferase (EC 2.3.2.27),RING/FYVE/PHD zinc finger superfamily protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|SAAS:SAAS00771976}. 2.3.2.27 86343,85576,85319,60808,37879 U-box domain-containing protein 7 (EC 2.3.2.27) (Plant U-box protein 7) (RING-type E3 ubiquitin transferase PUB7),U-box domain-containing protein 45 (EC 2.3.2.27) (Plant U-box protein 45) (RING-type E3 ubiquitin transferase PUB45),U-box domain-containing protein 6 (EC 2.3.2.27) (Plant U-box protein 6) (RING-type E3 ubiquitin transferase PUB6),RING-type E3 ubiquitin transferase (EC 2.3.2.27),RING/FYVE/PHD zinc finger superfamily protein ubiquitin-protein transferase activity [GO:0004842],transmembrane receptor protein serine/threonine kinase binding [GO:0070696]; ubiquitin-protein transferase activity [GO:0004842]; protein ubiquitination [GO:0016567],chloroplast [GO:0009507]; ubiquitin-protein transferase activity [GO:0004842] locus:2008813;,locus:2010424;,locus:2032472;,locus:504956192; AT1G67530,AT1G27910,AT1G24330,AT1G15165 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27),Os01g0901000 protein (Fragment) Q5N8V2,A0A0P0VBQ2 Q5N8V2_ORYSJ,A0A0P0VBQ2_ORYSJ Os01g0901000 OSNPB_010901000 P0035F12.19,Os01g0901000 OSNPB_010901000 ENOG411EMHX PUB13 Q9SNC6 PUB13_ARATH U-box domain-containing protein 13 (EC 2.3.2.27) (Plant U-box protein 13) (RING-type E3 ubiquitin transferase PUB13) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 71966 U-box domain-containing protein 13 (EC 2.3.2.27) (Plant U-box protein 13) (RING-type E3 ubiquitin transferase PUB13) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; transmembrane receptor protein serine/threonine kinase binding [GO:0070696]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium [GO:0042742]; negative regulation of apoptotic process [GO:0043066]; protein ubiquitination [GO:0016567]; regulation of photoperiodism, flowering [GO:2000028] locus:2075140; AT3G46510 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27),Os03g0275900 protein (Fragment),Os03g0275900 protein Q10NB2,A0A0N7KH10,A0A0P0VWL8 Q10NB2_ORYSJ,A0A0N7KH10_ORYSJ,A0A0P0VWL8_ORYSJ Os03g0275900 LOC_Os03g16824 Os03g0275900 OsJ_10327 OSNPB_030275900,Os03g0275900 OSNPB_030275900 ENOG411EMHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA vacuolar protein 8-like Armadillo/beta-catenin-like repeat family protein, expressed (Os10g0522601 protein) Q336Z5 Q336Z5_ORYSJ Os10g0522601 LOC_Os10g37850 OSNPB_100522601 ENOG411EMHS PUB10,PUB11 Q9C9A6,Q8GUG9,B3H660 PUB10_ARATH,PUB11_ARATH,B3H660_ARATH U-box domain-containing protein 10 (EC 2.3.2.27) (Plant U-box protein 10) (RING-type E3 ubiquitin transferase PUB10),U-box domain-containing protein 11 (EC 2.3.2.27) (Plant U-box protein 11) (RING-type E3 ubiquitin transferase PUB11),RING-type E3 ubiquitin transferase (EC 2.3.2.27) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|SAAS:SAAS00771976}. 2.3.2.27 68975,67356,52619 U-box domain-containing protein 10 (EC 2.3.2.27) (Plant U-box protein 10) (RING-type E3 ubiquitin transferase PUB10),U-box domain-containing protein 11 (EC 2.3.2.27) (Plant U-box protein 11) (RING-type E3 ubiquitin transferase PUB11),RING-type E3 ubiquitin transferase (EC 2.3.2.27) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein self-association [GO:0043621]; ubiquitin-protein transferase activity [GO:0004842]; protein autoubiquitination [GO:0051865]; protein destabilization [GO:0031648]; protein ubiquitination [GO:0016567]; regulation of jasmonic acid mediated signaling pathway [GO:2000022],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567]; response to chitin [GO:0010200],ubiquitin-protein transferase activity [GO:0004842] locus:2013990;,locus:2017719; AT1G71020,AT1G23030 U-box domain-containing protein RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q6Z2K3 Q6Z2K3_ORYSJ Os02g0732200 Os02g0732200 OSNPB_020732200 P0643A10.18 ENOG411EMHQ PUB4 O22193,A0A1P8AYN7,F4ILG6 PUB4_ARATH,A0A1P8AYN7_ARATH,F4ILG6_ARATH U-box domain-containing protein 4 (EC 2.3.2.27) (Plant U-box protein 4) (RING-type E3 ubiquitin transferase PUB4),RING-type E3 ubiquitin transferase (EC 2.3.2.27) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|SAAS:SAAS00771976}. 2.3.2.27 89986,68380,90346 U-box domain-containing protein 4 (EC 2.3.2.27) (Plant U-box protein 4) (RING-type E3 ubiquitin transferase PUB4),RING-type E3 ubiquitin transferase (EC 2.3.2.27) nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842],ubiquitin-protein transferase activity [GO:0004842],cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase activity involved in chloroplast disassembly [GO:1904822]; anther wall tapetum development [GO:0048658]; cellular response to reactive oxygen species [GO:0034614]; chloroplast disassembly [GO:1904821]; protein ubiquitination [GO:0016567] locus:2045334; AT2G23140 U-box domain-containing protein 4-like RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q6ZC56 Q6ZC56_ORYSJ Os08g0110500 OsJ_25785 OSNPB_080110500 P0007D08.34 ENOG411EMHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein Arm repeat-containing protein-like (Os09g0416900 protein) Q6EQ04 Q6EQ04_ORYSJ Os09g0416900 OSNPB_090416900 P0014G10.24 ENOG411EMHW Q8H1N2,Q9SZ56 Q8H1N2_ARATH,Q9SZ56_ARATH ARM repeat superfamily protein (Uncharacterized protein At2g25130/F13D4.90),ARM repeat superfamily protein (At4g31890) (Uncharacterized protein AT4g31890) 51179,56229 ARM repeat superfamily protein (Uncharacterized protein At2g25130/F13D4.90),ARM repeat superfamily protein (At4g31890) (Uncharacterized protein AT4g31890) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2040214;,locus:2116792; AT2G25130,AT4G31890 ARM NA NA NA NA NA NA NA ENOG411EMHT CSI1 F4IIM1 CSI1_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 1 (Protein POM-POM 2) DISRUPTION PHENOTYPE: Altered microtubule-dependent dynamics of cellulase synthase (CESA) complexes (CSCs) (PubMed:22190487, PubMed:21150290, PubMed:20616083, PubMed:22294619, PubMed:22751327, PubMed:23623553, PubMed:24368796). Reduced cellulose content, with abnormal organization of cellulose microfibrils (PubMed:20616083, PubMed:23623553). Anisotropic growth defect; abnormal cell expansion, such as reduced cell elongation but increased cell volume, leading to radially swollen epidermal cells in both primary root and dark-grown hypocotyls, as well as dwarfism (PubMed:7743935, PubMed:21150290, PubMed:20616083, PubMed:22294619, PubMed:22190487, PubMed:22427339, PubMed:24368796). Organ and cell twisting leading to alterated phyllotaxis, such as subtle right-handed torsion of the inflorescence stems and hypocotyls, and associated with altered microtubule organization and uncoupled cellulose deposition from cortical microtubules (PubMed:22294619, PubMed:23623553). Reduced fertility due to smaller gynoecia with fewer ovules, heterostyly, the inability of anthers to release pollen, and pollen defects displaying irregular or collapsed cell wall morphologies as well as altered pollen tube development (PubMed:22427339, PubMed:21150290, PubMed:20616083, PubMed:22294619). Defective anther dehiscence. Decreased number of ovules per gynoecium. Hypersensitive to the microtubule-disrupting drug oryzalin. Altered depolymerization of cortical microtubules in response to dehydration. Enhanced sensitivity to exogenous calcium leading to root growth inhibition (PubMed:22427339). The csi1 csi3 double mutants shows an enhanced cell expansion defect compared to csi1 as well as an additive reduction of cellulase synthase (CESA) complexes (CSCs) velocities (PubMed:24368796). {ECO:0000269|PubMed:20616083, ECO:0000269|PubMed:21150290, ECO:0000269|PubMed:22190487, ECO:0000269|PubMed:22294619, ECO:0000269|PubMed:22427339, ECO:0000269|PubMed:22751327, ECO:0000269|PubMed:23623553, ECO:0000269|PubMed:24368796, ECO:0000269|PubMed:7743935}. Callus-induced roots from the mutant displayed the mutant phenotype when they grew under restrictive conditions. All the mutants responded to a gravitropic stimulus in a manner similar to wild type although the change of the direction of growth was slower than wild type.,Extremely low fertility.,Reduced filament elongation as well as thickening of the style. Male gametophyte defective; Homozygotes are viable; Short, thick hypocotyl and roots; Dwarf-C. Somerville-2010 FUNCTION: Regulator of the microtubular cytoskeleton (PubMed:22427339). Microtubule-associated protein essential for the functional association of cellulase synthase (CESA) complexes (CSCs) and cortical microtubules (PubMed:22294619, PubMed:22190487, PubMed:22751327, PubMed:23623553, PubMed:24368796). Promotes dynamics of CSCs in the plasma membrane (PubMed:21150290, PubMed:20616083, PubMed:22294619, PubMed:22190487, PubMed:22751327, PubMed:23623553, PubMed:24368796). Regulates primary cell wall biosynthesis and cellulose microfibrils organization (PubMed:21150290, PubMed:20616083, PubMed:23623553). Required for the regulation of root cell elongation/expansion (PubMed:7743935, PubMed:21150290, PubMed:20616083, PubMed:22294619, PubMed:22427339). Necessary for the formation of ovules, pollen cell wall morphogenesis and pollen tube development (PubMed:22294619). Involved in anther dehiscence, via dehydration-induced microtubule depolymerization and reorganization. May play a role in early gynoecial development (PubMed:22427339). {ECO:0000269|PubMed:20616083, ECO:0000269|PubMed:21150290, ECO:0000269|PubMed:22190487, ECO:0000269|PubMed:22294619, ECO:0000269|PubMed:22427339, ECO:0000269|PubMed:22751327, ECO:0000269|PubMed:23623553, ECO:0000269|PubMed:24368796, ECO:0000269|PubMed:7743935}.; FUNCTION: Target of the cellulase synthase (CESA) complexes (CSCs) trafficking inhibitor CESTRIN, which reduces cellulose content and alters anisotropic growth of hypocotyls; CESTRIN treatment inhibits the dynamics of CSCs. {ECO:0000269|PubMed:25535279}. 230706 Protein CELLULOSE SYNTHASE INTERACTIVE 1 (Protein POM-POM 2) cellulose synthase complex [GO:0010330]; cortical microtubule [GO:0055028]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; Golgi apparatus [GO:0005794]; microtubule minus-end [GO:0036449]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; microtubule binding [GO:0008017]; anisotropic cell growth [GO:0051211]; anther dehiscence [GO:0009901]; cellulose biosynthetic process [GO:0030244]; cellulose microfibril organization [GO:0010215]; cortical microtubule organization [GO:0043622]; gynoecium development [GO:0048467]; plant-type primary cell wall biogenesis [GO:0009833]; pollen tube development [GO:0048868]; pollen wall assembly [GO:0010208]; protein localization to cortical microtubule cytoskeleton [GO:0072699]; regulation of cell shape [GO:0008360]; regulation of growth [GO:0040008]; regulation of microtubule cytoskeleton organization [GO:0070507]; regulation of root morphogenesis [GO:2000067]; response to calcium ion [GO:0051592]; response to water deprivation [GO:0009414] DEVELOPMENTAL STAGE: Strongly expressed in the stigma and pollen grains. Present at lower levels in sepals, filaments, and anther wall. Absent from the ovary. {ECO:0000269|PubMed:22427339}. TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and pollen (PubMed:20616083, PubMed:22427339). Highly expressed in floral tissues (PubMed:22427339). {ECO:0000269|PubMed:20616083, ECO:0000269|PubMed:22427339}. locus:2827868; AT2G22125 Armadillo/beta-catenin-like repeat Os06g0223800 protein (Fragment) A0A0N7KLS7 A0A0N7KLS7_ORYSJ Os06g0223800 OSNPB_060223800 ENOG411EMHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein 15-like RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q6Z250,A0A0P0X147 Q6Z250_ORYSJ,A0A0P0X147_ORYSJ Os08g0481200 Os08g0481200 OSJNBb0092C08.24 OSNPB_080481200,Os06g0726900 OSNPB_060726900 ENOG411EDVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB And C-terminal Kelch NA NA NA NA NA NA NA ENOG411EDVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) OSJNBb0026E15.11 protein (Os04g0196600 protein) (cDNA clone:J033110G11, full insert sequence) Q7XPB0 Q7XPB0_ORYSJ Os04g0196600 Os04g0196600 OSJNBb0026E15.11 OSNPB_040196600 ENOG411EDVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EDVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EDVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase NA NA NA NA NA NA NA ENOG411EDVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EDVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDVF SBT3.14,SBT3.15,SBT3.13 Q9SVT4,F4JJL8,Q8GUK4 SBT3E_ARATH,SBT3F_ARATH,SBT3D_ARATH Subtilisin-like protease SBT3.14 (EC 3.4.21.-) (Subtilase subfamily 3 member 14) (AtSBT3.14),Subtilisin-like protease SBT3.15 (EC 3.4.21.-) (Subtilase subfamily 3 member 15) (AtSBT3.15),Subtilisin-like protease SBT3.13 (EC 3.4.21.-) (Subtilase subfamily 3 member 13) (AtSBT3.13) 3.4.21.- 81222,81479,81480 Subtilisin-like protease SBT3.14 (EC 3.4.21.-) (Subtilase subfamily 3 member 14) (AtSBT3.14),Subtilisin-like protease SBT3.15 (EC 3.4.21.-) (Subtilase subfamily 3 member 15) (AtSBT3.15),Subtilisin-like protease SBT3.13 (EC 3.4.21.-) (Subtilase subfamily 3 member 13) (AtSBT3.13) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; serine-type endopeptidase activity [GO:0004252],extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252] locus:2119008;,locus:2119018;,locus:2119028; AT4G21630,AT4G21640,AT4G21650 subtilase family NA NA NA NA NA NA NA ENOG411EDVY BASIC PROLINE-RICH PROTEIN2 Q9S7V5 Q9S7V5_ARATH AT3g09000/T16O11_4 (At3g09000) (MZB10.3 protein) (Proline-rich family protein) (T16O11.4 protein) (Uncharacterized protein At3g09000) 56814 AT3g09000/T16O11_4 (At3g09000) (MZB10.3 protein) (Proline-rich family protein) (T16O11.4 protein) (Uncharacterized protein At3g09000) microtubule associated complex [GO:0005875] locus:2095329; AT3G09000 NA NA NA NA NA NA NA NA ENOG411EDVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411EDVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidohydrolase family NA NA NA NA NA NA NA ENOG411EDVU Q9C6D0,Q9LH41 Q9C6D0_ARATH,Q9LH41_ARATH Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) (Uncharacterized protein At1g49840) (Uncharacterized protein F10F5.2),AT3g19540/T31J18_4 (Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)) 53975,52559 Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) (Uncharacterized protein At1g49840) (Uncharacterized protein F10F5.2),AT3g19540/T31J18_4 (Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)) transferase activity [GO:0016740],plasma membrane [GO:0005886]; transferase activity [GO:0016740] locus:2007268;,locus:2101510; AT1G49840,AT3G19540 Protein of unknown function (DUF620) NA NA NA NA NA NA NA ENOG411EDVT Q9ASQ8,A0A1P8ARS1,F4I323,F4I321 Q9ASQ8_ARATH,A0A1P8ARS1_ARATH,F4I323_ARATH,F4I321_ARATH At1g22910/F19G10_13 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 26680,21251,25887,37840 At1g22910/F19G10_13 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:2017779; AT1G22910 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EDVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADP-ribosylation factor NA NA NA NA NA NA NA ENOG411EDV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription regulatory region sequence-specific DNA binding Homeobox-leucine zipper protein HOX23 (HD-ZIP protein HOX23) (Homeodomain transcription factor HOX23) (OsHox23),Os10g0404900 protein Q94GL5,A0A0P0XTW0 HOX23_ORYSJ,A0A0P0XTW0_ORYSJ HOX23 Os10g0404900 LOC_Os10g26500 OSJNBb0044I14.6,Os10g0404900 OSNPB_100404900 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411EDV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region 2 NA NA NA NA NA NA NA ENOG411EDV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDV3 EXL1 Q94CH8 EXL1_ARATH GDSL esterase/lipase EXL1 (EC 3.1.1.-) (Family II extracellular lipase 1) (Family II lipase EXL1) ARA:AT1G75880-MONOMER; 3.1.1.- 41334 GDSL esterase/lipase EXL1 (EC 3.1.1.-) (Family II extracellular lipase 1) (Family II lipase EXL1) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Flower buds. {ECO:0000269|PubMed:11431566}. locus:2204420; AT1G75880 Family II extracellular lipase 1 NA NA NA NA NA NA NA ENOG411EDV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EDV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EDV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411EDV7 Q9FIN1,Q8LG70 6PGL4_ARATH,6PGL2_ARATH Probable 6-phosphogluconolactonase 4 (6PGL 4) (EC 3.1.1.31),Probable 6-phosphogluconolactonase 2 (6PGL 2) (EC 3.1.1.31) FUNCTION: Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. {ECO:0000250}. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 2/3. ARA:AT5G24410-MONOMER;,ARA:AT3G49360-MONOMER; R-ATH-71336; 3.1.1.31; 3.1.1.31 29244,28863 Probable 6-phosphogluconolactonase 4 (6PGL 4) (EC 3.1.1.31),Probable 6-phosphogluconolactonase 2 (6PGL 2) (EC 3.1.1.31) cytosol [GO:0005829]; 6-phosphogluconolactonase activity [GO:0017057]; carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt, oxidative branch [GO:0009051],cytosol [GO:0005829]; vacuolar membrane [GO:0005774]; 6-phosphogluconolactonase activity [GO:0017057]; carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt, oxidative branch [GO:0009051] locus:2152911;,locus:2082916; AT5G24410,AT3G49360 Inherit from KOG: 6-phosphogluconolactonase NA NA NA NA NA NA NA ENOG411EDV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411E5QY ENODL1 Q9FN39,A0A1P8BGZ7 Q9FN39_ARATH,A0A1P8BGZ7_ARATH At5g53870 (Early nodulin-like protein 1) (Similarity to phytocyanin/early nodulin-like protein),Early nodulin-like protein 1 38395,37581 At5g53870 (Early nodulin-like protein 1) (Similarity to phytocyanin/early nodulin-like protein),Early nodulin-like protein 1 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; electron carrier activity [GO:0009055],electron carrier activity [GO:0009055] locus:2154679; AT5G53870 Early nodulin-like protein NA NA NA NA NA NA NA ENOG411E5QX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0511600 protein (cDNA clone:002-180-C12, full insert sequence),LGC1 (LGC1, putative) (Os11g0224200 protein),Os11g0222800 protein,Os06g0620500 protein,Os11g0224301 protein (Fragment) Q6K781,Q53P07,Q53NZ4,B9FPY6,A0A0N7KSN0 Q6K781_ORYSJ,Q53P07_ORYSJ,Q53NZ4_ORYSJ,B9FPY6_ORYSJ,A0A0N7KSN0_ORYSJ Os02g0511600 Os02g0511600 OSJNBa0001A11.22 OSNPB_020511600,Os11g0224200 LOC_Os11g11680 OsJ_33415 OSNPB_110224200,Os11g0222800 LOC_Os11g11540 OsJ_33404 OSNPB_110222800,Os06g0620500 OsJ_21997 OSNPB_060620500,Os11g0224301 OSNPB_110224301 ENOG411E5QZ PAM16L2,PAM16L1,AtPAM16L,TXR1 Q93VV9,Q93W66,A0A1P8BEU0,A0A1I9LTR7 TM16B_ARATH,TM16A_ARATH,A0A1P8BEU0_ARATH,A0A1I9LTR7_ARATH Mitochondrial import inner membrane translocase subunit PAM16 like 2 (AtPAM16) (AtPAM16L2) (Presequence translocated-associated motor subunit PAM16) (Protein MUTANT SNC1-ENHANCING 5) (Protein THAXTOMIN A RESISTANT 1),Mitochondrial import inner membrane translocase subunit PAM16 like 1 (AtPAM16L) (AtPAM16L1) (Presequence translocated-associated motor subunit PAM16L) (Protein MUTANT SNC1-ENHANCING 5 LIKE),Protein Transporter, Pam16 DISRUPTION PHENOTYPE: Reduced growth, especially at high temperatures (>21 degrees Celsius), as well as warped and twisted leaves at the later rosette stage (PubMed:12897252, PubMed:23638731, PubMed:24153405). Increased resistance to thaxtomin, a phytotoxin produced by Streptomyces bacteria, due to reduced toxin uptake (PubMed:12897252). Enhanced tolerance to 1-napthylphthalamic acid (NPA), an auxin efflux transport inhibitor which blocks polar auxin transport. Increased tolerance to isoxaben (IXB), a cellulose biosynthesis inhibitor (CBI) (PubMed:23638731). In single mutants, enhanced resistance against virulent pathogens (e.g. oomycete H.arabidopsidis Noco2 and bacteria P.syringae pv. maculicola ES4326) associated with elevated reactive oxygen species (ROS) accumulation and higher expression of pathogenesis related genes PR-1 and PR-2 (PubMed:24153405). The double mutant Atpam16-1 Atpam16l is lethal (PubMed:24153405). {ECO:0000269|PubMed:12897252, ECO:0000269|PubMed:23638731, ECO:0000269|PubMed:24153405}.,DISRUPTION PHENOTYPE: No visible phenotype and normal sensitivity to pathogens, but higher expression of pathogenesis related genes PR-1 and PR-2 in Atpam16l. The double mutant Atpam16-1 Atpam16l is lethal. {ECO:0000269|PubMed:24153405}. FUNCTION: Regulates ATP-dependent protein translocation into the mitochondrial matrix (By similarity). Involved in the uptake of thaxtomin, a phytotoxin produced by Streptomyces bacteria, that causes dramatic cell swelling, reduced seedling growth, and inhibition of cellulose synthesis (PubMed:12897252, PubMed:23638731). Modulates polar auxin transport (PubMed:23638731). Involved in importing a negative regulator of plant immunity into mitochondria, thus protecting plants from over-accumulation of reactive oxygen species (ROS) and preventing autoimmunity. Confers sensitivity to virulent pathogens such as the oomycete H.arabidopsidis Noco2 and the bacteria P.syringae pv. maculicola ES4326 (PubMed:24153405). {ECO:0000250|UniProtKB:Q9Y3D7, ECO:0000269|PubMed:12897252, ECO:0000269|PubMed:23638731, ECO:0000269|PubMed:24153405}.,FUNCTION: Regulates ATP-dependent protein translocation into the mitochondrial matrix. {ECO:0000250|UniProtKB:Q9Y3D7}. 12676,12311,11200,12577 Mitochondrial import inner membrane translocase subunit PAM16 like 2 (AtPAM16) (AtPAM16L2) (Presequence translocated-associated motor subunit PAM16) (Protein MUTANT SNC1-ENHANCING 5) (Protein THAXTOMIN A RESISTANT 1),Mitochondrial import inner membrane translocase subunit PAM16 like 1 (AtPAM16L) (AtPAM16L1) (Presequence translocated-associated motor subunit PAM16L) (Protein MUTANT SNC1-ENHANCING 5 LIKE),Protein Transporter, Pam16 cytoplasm [GO:0005737]; mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; mitochondrion [GO:0005739]; auxin-activated signaling pathway [GO:0009734]; defense response [GO:0006952]; negative regulation of defense response [GO:0031348]; negative regulation of defense response to bacterium [GO:1900425]; negative regulation of defense response to oomycetes [GO:1902289]; negative regulation of reactive oxygen species metabolic process [GO:2000378]; positive regulation of toxin transport [GO:1902009]; protein import into mitochondrial matrix [GO:0030150]; regulation of auxin polar transport [GO:2000012]; response to molecule of bacterial origin [GO:0002237],mitochondrial inner membrane [GO:0005743]; mitochondrial inner membrane presequence translocase complex [GO:0005744]; negative regulation of defense response [GO:0031348]; protein import into mitochondrial matrix [GO:0030150],mitochondrial inner membrane presequence translocase complex [GO:0005744]; protein import into mitochondrial matrix [GO:0030150] DEVELOPMENTAL STAGE: Accumulates during senescence. {ECO:0000269|PubMed:24194927}. TISSUE SPECIFICITY: Expressed constitutively and ubiquitously, except in root tips, at low levels. {ECO:0000269|PubMed:12897252, ECO:0000269|PubMed:24194927}.,TISSUE SPECIFICITY: Expressed at low levels in seedlings, rosettes and inflorescence. {ECO:0000269|PubMed:24194927}. locus:2081152;,locus:2159228; AT3G59280,AT5G61880 Mitochondrial import inner membrane translocase subunit Magmas-like protein (Os01g0960800 protein) (cDNA clone:J033075P16, full insert sequence),Os10g0479600 protein (cDNA clone:001-112-H08, full insert sequence) Q5JN36,Q337K2 Q5JN36_ORYSJ,Q337K2_ORYSJ Os01g0960800 Os01g0960800 OSNPB_010960800 P0401G10.29 P0483G10.4,LOC_Os10g33910 Os10g0479600 OSNPB_100479600 ENOG411E5QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E5QP TIFY9,JAZ10 Q93ZM9,A0A1P8BCH9,A0A1P8BCK0,A0A1P8BCI4 TIF9_ARATH,A0A1P8BCH9_ARATH,A0A1P8BCK0_ARATH,A0A1P8BCI4_ARATH Protein TIFY 9 (Jasmonate ZIM domain-containing protein 10) (Protein JASMONATE-ASSOCIATED 1) (Protein JAZ10),Jasmonate-zim-domain protein 10 FUNCTION: Modulator of growth inhibition. Isoform 2 and isoform 3, but not isoform 1, confer a strong methyl-jasmonate insensitivity. Not involved in the growth response to salicylic acid or indole-3-acetic acid. Isoform 3 acts as an endogenous repressor of JA signal output in JA-stimulated cells (PubMed:19151223). {ECO:0000269|PubMed:17675405, ECO:0000269|PubMed:19151223, ECO:0000269|PubMed:23632853}. MISCELLANEOUS: Isoform 3 is highly resistant to jasmonate-induced degradation mediated by the 26S-proteasome pathway. {ECO:0000305|PubMed:19151223}. 21813,25087,19748,18081 Protein TIFY 9 (Jasmonate ZIM domain-containing protein 10) (Protein JASMONATE-ASSOCIATED 1) (Protein JAZ10),Jasmonate-zim-domain protein 10 nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of systemic acquired resistance [GO:0010112]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:2183921; AT5G13220 jasmonate-zim-domain protein 10 NA NA NA NA NA NA NA ENOG411E5QS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain-containing protein Heavy metal-associated domain, putative (Heavy-metal-associated domain-containing protein, putative, expressed) (Os10g0506100 protein) (cDNA clone:J013094M15, full insert sequence),Os03g0111400 protein (cDNA, clone: J100050C22, full insert sequence) Q7G2B2,A3ADD6 Q7G2B2_ORYSJ,A3ADD6_ORYSJ Os10g0506100 LOC_Os10g36200 Os10g0506100 OsJ_32093 OSNPB_100506100,Os03g0111400 OsJ_09136 OSNPB_030111400 ENOG411E5QR ERF086 Q6J9Q2 ERF86_ARATH Ethylene-responsive transcription factor ERF086 DISRUPTION PHENOTYPE: Disturbed cell division patterns in lateral root primordia leading to the expansion of the proximal region of lateral roots. Short lateral roots in young seedlings (PubMed:17630277). In the shoot, formation of small pin-shaped protrusions at the base of pedicels (PubMed:17630277, PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}. shorter visible lateral roots at 9 days after germination. The proximal region of each lateral root in the mutant is significantly swollen and often bent. Growth and morphology of the primary root of the puchi mutant is normal. Abnormal lateral root formation-M. Tasaka-2007 FUNCTION: Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. 38455 Ethylene-responsive transcription factor ERF086 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; bract development [GO:0010432]; ethylene-activated signaling pathway [GO:0009873]; floral meristem determinacy [GO:0010582]; floral meristem growth [GO:0010451]; flower development [GO:0009908]; lateral root morphogenesis [GO:0010102]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}. locus:2182993; AT5G18560 Transcription factor Ethylene-responsive transcription factor FZP (OsERF078) (Protein BRANCHED FLORETLESS 1) (Protein FRIZZY PANICLE) (Protein FRIZZY PANICLE 2) Q8H3Q1 FZP_ORYSJ FZP BFL1 ERF78 FZP2 Os07g0669500 LOC_Os07g47330 OsJ_25514 P0625E02.126 DISRUPTION PHENOTYPE: Altered specification of terminal and lateral spikelet meristems, resulting in the generation of a panicle composed of excessive ramification of rachis-branches. {ECO:0000269|PubMed:11237465}. FUNCTION: Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. ENOG411E5QU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os01g0527900 protein (Ribosomal protein-like),Os11g0282700 protein (Transposon protein, putative, Pong sub-class, expressed) (cDNA clone:J033135A20, full insert sequence),Os06g0521000 protein (Ribosomal protein-like),Os02g0785600 protein Q8S0Y0,Q0ITA8,Q5Z5P3,A0A0N7KG79 Q8S0Y0_ORYSJ,Q0ITA8_ORYSJ,Q5Z5P3_ORYSJ,A0A0N7KG79_ORYSJ Os01g0527900 B1074C08.37 B1129H01.6 OsJ_02057 OSNPB_010527900,Os11g0282700 LOC_Os11g17954 Os11g0282700 OSNPB_110282700,Os06g0521000 OSJNBa0077L03.46 OSNPB_060521000 P0485D10.2,Os02g0785600 OSNPB_020785600 ENOG411E5QT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411E5QW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING OJ991113_30.11 protein (Os04g0487700 protein),OJ991113_30.9 protein (Os04g0487400 protein) Q7XUF7,Q7XSB3 Q7XUF7_ORYSJ,Q7XSB3_ORYSJ OJ991113_30.11 Os04g0487700 OsJ_15262 OSNPB_040487700,Os04g0487400 OJ991113_30.9 OsJ_15261 OSNPB_040487400 ENOG411E5QV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os10g0422600 protein (Fragment) Q0IXM0 Q0IXM0_ORYSJ Os10g0422600 Os10g0422600 OSNPB_100422600 ENOG411E5QI OFP6 Q3EAL1 OFP6_ARATH Transcription repressor OFP6 (Ovate family protein 6) (AtOFP6) FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP6 show flat, thick and cyan leaves, and enhanced apical dormancy. {ECO:0000305|PubMed:21886836}. 17908 Transcription repressor OFP6 (Ovate family protein 6) (AtOFP6) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, shoots, rosette and cauline leaves, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:504955854; AT3G52525 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E5QH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os02g0656600 protein (Putative DRE binding factor 2) Q6H6G7 Q6H6G7_ORYSJ Os02g0656600 Os02g0656600 OsJ_07793 OSNPB_020656600 P0519E06.28 ENOG411E5QK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E5QJ F4IBX8 F4IBX8_ARATH Transmembrane protein 25140 Transmembrane protein integral component of membrane [GO:0016021] locus:4515102776; AT1G78922 NA NA NA NA NA NA NA NA ENOG411E5QM ERF026 Q9CAN9 ERF26_ARATH Ethylene-responsive transcription factor ERF026 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 26017 Ethylene-responsive transcription factor ERF026 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] AT1G63040 Transcription factor Os02g0676800 protein (Putative DRE binding factor 2) (cDNA, clone: J100032D11, full insert sequence) Q6EP81 Q6EP81_ORYSJ Os02g0676800 Os02g0676800 OSJNBb0005A04.9 OSNPB_020676800 P0135D07.36 ENOG411E5QN MBD13 Q9LTJ8 MBD13_ARATH Methyl-CpG-binding domain-containing protein 13 (AtMBD13) (MBD13) (Methyl-CpG-binding protein MBD13) FUNCTION: Probable transcriptional regulator. {ECO:0000250}. 82656 Methyl-CpG-binding domain-containing protein 13 (AtMBD13) (MBD13) (Methyl-CpG-binding protein MBD13) nucleus [GO:0005634]; methyl-CpG binding [GO:0008327]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2145091; AT5G52230 Methyl binding domain protein NA NA NA NA NA NA NA ENOG411E5QA Q8L6Z3,A0A1P8AZ17,A8MRU4,F4IW42 Q8L6Z3_ARATH,A0A1P8AZ17_ARATH,A8MRU4_ARATH,F4IW42_ARATH At4g38290 (Integral membrane hemolysin-III-like protein) (Uncharacterized protein At4g38280) (Uncharacterized protein At4g38290),Integral membrane hemolysin-III-like protein 18775,20150,23886,22302 At4g38290 (Integral membrane hemolysin-III-like protein) (Uncharacterized protein At4g38280) (Uncharacterized protein At4g38290),Integral membrane hemolysin-III-like protein mitochondrion [GO:0005739],DRM complex [GO:0070176]; cell cycle [GO:0007049]; transcription, DNA-templated [GO:0006351] locus:2121768;,locus:2050906; AT4G38280,AT2G45250 NA NA NA NA NA NA NA NA ENOG411E5QC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E5QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain transcription factor superfamily protein Os03g0841200 protein Q6AVQ9 Q6AVQ9_ORYSJ Os03g0841200 LOC_Os03g62440 OSJNBa0075M12.13 OSNPB_030841200 ENOG411E5QE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0160100 protein Q6H7U9 Q6H7U9_ORYSJ Os02g0160100 B1103G11.36 OJ9003_G05.1 OSNPB_020160100 ENOG411E5QD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os02g0173200 protein Q6H515 Q6H515_ORYSJ Os02g0173200 OSJNBa0073A21.9 OSNPB_020173200 ENOG411E5QG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0503300 protein A0A0P0V302 A0A0P0V302_ORYSJ Os01g0503300 OSNPB_010503300 ENOG411E5QF STKL1,STKL2 Q9LG15,Q9SYA9,Q8LG05,Q9C517,Q9LPF0,Q9ZU30,O65270,O23063,Q3EAE7,O23077 STKLC_ARATH,STKLD_ARATH,STKLM_ARATH,STKLE_ARATH,STKLB_ARATH,STKLF_ARATH,STKLQ_ARATH,STKLP_ARATH,STKLL_ARATH,STKLN_ARATH Probable transcription factor At1g55950 (Storekeeper-like protein At1g55950),Probable transcription factor At1g61730 (Storekeeper-like protein At1g61730),Transcription factor STKL1 (Protein Storekeeper-like 1),Probable transcription factor At1g66420 (Storekeeper-like protein At1g66420),Probable transcription factor At1g44810 (Storekeeper-like protein At1g44810),Probable transcription factor At2g01370 (Storekeeper-like protein At2g01370),Probable transcription factor At4g00610 (Storekeeper-like protein At4g00610),Probable transcription factor At4g00390 (Storekeeper-like protein At4g00390),Probable transcription factor At4g00232 (Storekeeper-like protein At4g00232),Transcription factor STKL2 (Protein Storekeeper-like 2) FUNCTION: Transcription repressor that binds DNA in a sequence-specific manner, 5'-GCCT-3', to regulate the expression of PGR. Acts as a modulatory component for the glucose-triggered developmental leaf growth process. {ECO:0000269|PubMed:27031427}. 23414,40880,38186,32413,32953,29437,37058,39209,17665,35513 Probable transcription factor At1g55950 (Storekeeper-like protein At1g55950),Probable transcription factor At1g61730 (Storekeeper-like protein At1g61730),Transcription factor STKL1 (Protein Storekeeper-like 1),Probable transcription factor At1g66420 (Storekeeper-like protein At1g66420),Probable transcription factor At1g44810 (Storekeeper-like protein At1g44810),Probable transcription factor At2g01370 (Storekeeper-like protein At2g01370),Probable transcription factor At4g00610 (Storekeeper-like protein At4g00610),Probable transcription factor At4g00390 (Storekeeper-like protein At4g00390),Probable transcription factor At4g00232 (Storekeeper-like protein At4g00232),Transcription factor STKL2 (Protein Storekeeper-like 2) regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleolus [GO:0005730]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]; glucosinolate metabolic process [GO:0019760]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleolus [GO:0005730]; transcription regulatory region DNA binding [GO:0044212]; cellular response to glucose stimulus [GO:0071333]; negative regulation of gene expression [GO:0010629]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleolus [GO:0005730]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription regulatory region DNA binding [GO:0044212]; cellular response to glucose stimulus [GO:0071333]; negative regulation of gene expression [GO:0010629]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed strongly in leaves and flowers, weakly in roots, and very weakly in stems. {ECO:0000269|PubMed:27031427}. locus:2012070;,locus:2195748;,locus:505006413;,locus:2028997;,locus:2194874;,locus:2038821;,locus:2127098;,locus:2126091;,locus:505006410;,locus:2126006; AT1G55950,AT1G61730,AT4G00238,AT1G66420,AT1G44810,AT2G01370,AT4G00610,AT4G00390,AT4G00232,AT4G00250 DNA-binding storekeeper protein-related NA NA NA NA NA NA NA ENOG411E5Q9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411E5Q8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os05g0303600 protein B9FNR4 B9FNR4_ORYSJ Os05g0303600 OsJ_17970 OSNPB_050303600 ENOG411E5Q1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chaperone protein DnaJ Os03g0323600 protein A0A0P0VWS9 A0A0P0VWS9_ORYSJ Os03g0323600 OSNPB_030323600 ENOG411E5Q0 SAUR41 Q9SA49 SAU41_ARATH Auxin-responsive protein SAUR41 (Protein SMALL AUXIN UP RNA 41) FUNCTION: Plays a role in the regulation of cell expansion, root meristem patterning and auxin transport. {ECO:0000269|PubMed:23396598}. MISCELLANEOUS: Plants over-expressing SAUR41 display pleiotropic auxin-related phenotypes. These phenotypes include elongated hypocotyls, increased length of primary roots, increased numbers of lateral roots, increased vegetative biomass, twisted inflorescence stems, overexpanded petals, reduced seed setting and increased basipetal auxin transport in hypocotyls. {ECO:0000269|PubMed:23396598}. 16479 Auxin-responsive protein SAUR41 (Protein SMALL AUXIN UP RNA 41) cytoplasm [GO:0005737]; auxin transport [GO:0060918]; auxin-activated signaling pathway [GO:0009734]; cell growth [GO:0016049]; positive gravitropism [GO:0009958]; regulation of growth [GO:0040008]; root radial pattern formation [GO:0090057] DEVELOPMENTAL STAGE: During lateral root development, expressed in the prospective quiescent center of lateral root primordia. In newly formed lateral roots, strongly expressed in the quiescent center and initial cells and weakly expressed in the endodermis. {ECO:0000269|PubMed:23396598}. TISSUE SPECIFICITY: Specifically expressed in the quiescent center and cortex or endodermis initials of root stem niches. Expressed in vascular tissues from hypocotyls, petioles and cotyledons. {ECO:0000269|PubMed:23396598}. locus:2032915; AT1G16510 Auxin responsive protein Os04g0617050 protein (Fragment) A0A0P0WER0 A0A0P0WER0_ORYSJ Os04g0617050 OSNPB_040617050 ENOG411E5Q3 Q9LNM6 Q9LNM6_ARATH At1g34640 (F12K21.2) (Peptidase) 12686 At1g34640 (F12K21.2) (Peptidase) integral component of membrane [GO:0016021]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; signal peptide processing [GO:0006465] locus:2009248; AT1G34640 Microsomal signal peptidase 12 kDa subunit (SPC12) Signal peptidase complex-like protein DTM1 (Protein DEFECTIVE TAPETUM AND MEIOCYTES 1) Q7XI45 DTM1_ORYSJ DTM1 Os07g0622900 LOC_Os07g43010 P0524E08.106 DISRUPTION PHENOTYPE: Male sterility due to abnormal formation of the tapetum and development of pollen mother cells arrested at the early stages of meiotic prophase I. {ECO:0000269|PubMed:22111585}. FUNCTION: Functions in tapetum development during early meiosis. May play a role in the endoplasmic reticulum (ER) membrane in the early stages of tapetum development in anthers. Seems to function after MSP1 and before UDT1. {ECO:0000269|PubMed:22111585}. ENOG411E5Q2 MTG13.11 Q9M8T2,Q8H0X5,A8MS48,F4IYH7 Q9M8T2_ARATH,Q8H0X5_ARATH,A8MS48_ARATH,F4IYH7_ARATH At3g02900 (F13E7.15 protein) (Low-density receptor-like protein) (Uncharacterized protein At3g02900),Low-density receptor-like protein (Uncharacterized protein At5g16660),Low-density receptor-like protein 17321,18177,17858,18178 At3g02900 (F13E7.15 protein) (Low-density receptor-like protein) (Uncharacterized protein At3g02900),Low-density receptor-like protein (Uncharacterized protein At5g16660),Low-density receptor-like protein chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plastid [GO:0009536],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536],integral component of membrane [GO:0016021] locus:2075462;,locus:2174185; AT3G02900,AT5G16660 NA Expressed protein (Os12g0583400 protein) Q2QN09 Q2QN09_ORYSJ LOC_Os12g39370 Os12g0583400 OsJ_36670 OSNPB_120583400 ENOG411E5Q5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 NA NA NA NA NA NA NA ENOG411E5Q4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os12g0580700 protein (Zinc finger C3H4 type protein) (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J023149P20, full insert sequence) Q2QN37 Q2QN37_ORYSJ LOC_Os12g39110 Os12g0580700 OsJ_36657 OSNPB_120580700 ENOG411E5Q7 F18L15.30,F18L15.20 Q9SNA5,Q9SNA6,Q9LZ38 Q9SNA5_ARATH,Q9SNA6_ARATH,Q9LZ38_ARATH Uncharacterized protein F18L15.30,Uncharacterized protein F18L15.20,Uncharacterized protein T22P11_230 13994,15990,18125 Uncharacterized protein F18L15.30,Uncharacterized protein F18L15.20,Uncharacterized protein T22P11_230 locus:2078156;,locus:2078151;,locus:2181798; AT3G46310,AT3G46300,AT5G02640 expressed protein Os05g0120300 protein (cDNA clone:002-155-B10, full insert sequence) Q0DL68 Q0DL68_ORYSJ Os05g0120300 Os05g0120300 OsJ_16926 OSNPB_050120300 ENOG411E5Q6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response regulator NA NA NA NA NA NA NA ENOG411EKQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-utilising chromatin assembly and remodelling N-terminal NA NA NA NA NA NA NA ENOG411EKQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl CoA binding protein NA NA NA NA NA NA NA ENOG411EKQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD NA NA NA NA NA NA NA ENOG411EKQK B3H486,F4J6G5,A0A1I9LPK3 B3H486_ARATH,F4J6G5_ARATH,A0A1I9LPK3_ARATH Outer arm dynein light chain 1 protein 100033,114660,94207 Outer arm dynein light chain 1 protein locus:2088525; AT3G17920 Inherit from NOG: nischarin NA NA NA NA NA NA NA ENOG411EKQM EDL3 Q93ZT5 EDL3_ARATH EID1-like F-box protein 3 30560 EID1-like F-box protein 3 nucleus [GO:0005634]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2099227; AT3G63060 EID1-like F-box protein Os01g0802600 protein (Putative circadian clock coupling factor ZGT) Q8S2F7 Q8S2F7_ORYSJ Os01g0802600 OSNPB_010802600 P0003D09.35 ENOG411EKQG TAF15 Q9AST1,A0A1P8ARX2 TAF15_ARATH,A0A1P8ARX2_ARATH Transcription initiation factor TFIID subunit 15 (TBP-associated factor 15) (AtTAF15),TBP-associated factor 15 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. R-ATH-72163; 41276,31280 Transcription initiation factor TFIID subunit 15 (TBP-associated factor 15) (AtTAF15),TBP-associated factor 15 nucleus [GO:0005634]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2011967; AT1G50300 RNA binding nucleic acid binding nucleotide binding zinc ion binding NA NA NA NA NA NA NA ENOG411E19G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCT BRCA1 C Terminus domain containing protein, expressed (Expressed protein) (Os03g0811200 protein) Q6ATS1 Q6ATS1_ORYSJ OSJNBa0028F23.1 LOC_Os03g59650 Os03g0811200 OsJ_13067 OSNPB_030811200 ENOG411E19C HYP1 F4I248,Q8GUH7,A0A1P8AP05,F4J116,A0A1I9LRJ9,A0A1I9LRK0 CSCLB_ARATH,CSCLC_ARATH,A0A1P8AP05_ARATH,F4J116_ARATH,A0A1I9LRJ9_ARATH,A0A1I9LRK0_ARATH CSC1-like protein At1g69450,CSC1-like protein HYP1 (HYPOTHETICAL PROTEIN 1),Early-responsive to dehydration stress protein (ERD4),Uncharacterized protein FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. 81790,79726,85089,67533,66860,84961 CSC1-like protein At1g69450,CSC1-like protein HYP1 (HYPOTHETICAL PROTEIN 1),Early-responsive to dehydration stress protein (ERD4),Uncharacterized protein integral component of membrane [GO:0016021]; ion transport [GO:0006811],integral component of membrane [GO:0016021] locus:2007126;,locus:2102117; AT1G69450,AT3G01100 Domain of unknown function DUF221 Early-responsive to dehydration protein, putative, expressed (Os12g0582800 protein) Q2QN15 Q2QN15_ORYSJ LOC_Os12g39320 Os12g0582800 OsJ_17243 OSNPB_120582800 ENOG411E19B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Os06g0335975 protein,Os02g0280250 protein,Os02g0280300 protein A0A0P0WW62,A0A0P0VHJ0,A0A0P0VHK4 A0A0P0WW62_ORYSJ,A0A0P0VHJ0_ORYSJ,A0A0P0VHK4_ORYSJ Os06g0335975 OSNPB_060335975,Os02g0280250 OSNPB_020280250,Os02g0280300 OSNPB_020280300 ENOG411E19N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3474) NA NA NA NA NA NA NA ENOG411E19H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os01g0696800 protein,Os07g0533500 protein A2ZWV5,Q0JK46,A0A0P0X721 A2ZWV5_ORYSJ,Q0JK46_ORYSJ,A0A0P0X721_ORYSJ Os01g0696800 OsJ_03122 OSNPB_010696800,Os01g0696800 Os01g0696800 OSNPB_010696800,Os07g0533500 OSNPB_070533500 ENOG411E193 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os04g0139150 protein,Os12g0408000 protein (Fragment) B9FDH8,A0A0P0Y9B3 B9FDH8_ORYSJ,A0A0P0Y9B3_ORYSJ Os04g0139150 OsJ_13667 OSNPB_040139150,Os12g0408000 OSNPB_120408000 ENOG411E192 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isocitrate lyase family NA NA NA NA NA NA NA ENOG411E1V8 O48691,Q9LYF5,Q9T0D0,A0A1P8BFU6,A0A1P8AT48 O48691_ARATH,Q9LYF5_ARATH,Q9T0D0_ARATH,A0A1P8BFU6_ARATH,A0A1P8AT48_ARATH At1g24240/F3I6_17 (F3I6.17 protein) (Ribosomal protein L19 family protein) (Uncharacterized protein F3I6.17),AT5g11750/T22P22_140 (Ribosomal protein L19 family protein) (Uncharacterized protein T22P22_140),At4g11630 (Ribosomal protein L19 family protein) (Uncharacterized protein At4g11630),Ribosomal protein L19 family protein 25068,26030,25414,28957,17542 At1g24240/F3I6_17 (F3I6.17 protein) (Ribosomal protein L19 family protein) (Uncharacterized protein F3I6.17),AT5g11750/T22P22_140 (Ribosomal protein L19 family protein) (Uncharacterized protein T22P22_140),At4g11630 (Ribosomal protein L19 family protein) (Uncharacterized protein At4g11630),Ribosomal protein L19 family protein ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2032457;,locus:2181975;,locus:2139757; AT1G24240,AT5G11750,AT4G11630 ribosomal protein L19 Os02g0205000 protein (Putative plastid ribosomal protein L19) (cDNA clone:006-302-A07, full insert sequence) (cDNA clone:J033040E14, full insert sequence),Os02g0524300 protein Q6Z6D2,A0A0P0VJV3 Q6Z6D2_ORYSJ,A0A0P0VJV3_ORYSJ Os02g0205000 OsJ_05821 OSJNBb0056C19.18 OSNPB_020205000 P0544H11.34,Os02g0524300 OSNPB_020524300 ENOG411E1V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os07g0222501 protein,Os01g0855400 protein,Os07g0244500 protein A0A0P0X4C9,A0A0P0VAQ0,A0A0P0X4D5 A0A0P0X4C9_ORYSJ,A0A0P0VAQ0_ORYSJ,A0A0P0X4D5_ORYSJ Os07g0222501 OSNPB_070222501,Os01g0855400 OSNPB_010855400,Os07g0244500 OSNPB_070244500 ENOG411E1V0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E1V1 MYN8.5 Q9LV05,A0A1P8BD90 Q9LV05_ARATH,A0A1P8BD90_ARATH LOW protein: zinc finger CCCH domain protein 133359,132101 LOW protein: zinc finger CCCH domain protein cytosol [GO:0005829] locus:2178451; AT5G53440 NA Os01g0655400 protein,Eukaryotic translation initiation factor 3 subunit 10-like (Os01g0655400 protein) (cDNA clone:J013129E13, full insert sequence),Os01g0655400 protein (Fragment) Q5SN80,Q5SN81,A0A0P0V618 Q5SN80_ORYSJ,Q5SN81_ORYSJ,A0A0P0V618_ORYSJ OSJNBa0049H05.21-2 Os01g0655400 OSNPB_010655400,Os01g0655400 OsJ_02869 OSJNBa0049H05.21-1 OSNPB_010655400,Os01g0655400 OSNPB_010655400 ENOG411E1V6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0149800 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:006-212-E06, full insert sequence) Q10RQ6 Q10RQ6_ORYSJ LOC_Os03g05570 Os03g0149800 OSNPB_030149800 ENOG411E1VK Q9SIH5 FB322_ARATH Probable F-box protein At2g36090 35563 Probable F-box protein At2g36090 locus:2053509; AT2G36090 F-Box protein NA NA NA NA NA NA NA ENOG411E1VD GA20OX2,GA20OX1 Q39111,Q39110,A0A1P8BFP5,A0A1P8B5N0 GAOX2_ARATH,GAOX1_ARATH,A0A1P8BFP5_ARATH,A0A1P8B5N0_ARATH Gibberellin 20 oxidase 2 (EC 1.14.11.-) (GA 20-oxidase 2) (Gibberellin C-20 oxidase 2),Gibberellin 20 oxidase 1 (EC 1.14.11.-) (GA 20-oxidase 1) (AtGA20ox1) (Gibberellin C-20 oxidase 1),Gibberellin 20 oxidase 2,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein DISRUPTION PHENOTYPE: Slightly smaller than the wild type. {ECO:0000269|PubMed:18069939}.,DISRUPTION PHENOTYPE: Semi-dwarf. {ECO:0000269|PubMed:18069939}. slightly smaller than the wild type.,semidwarf Semi-dwarf; Short hypocotyl; Short siliques (no reduction in fertility); Late flowering-P. Hedden-2008,Semi-dwarf; Increased branching; Short, indehiscent anthers and sterility in early flowers-J. Zeevaart-1995 FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product. Involved in the promotion of the floral transition, fertility and silique elongation, but plays only a minor role in elongation of seedling organs. Acts redundantly with GA20OX1. {ECO:0000269|PubMed:18069939}.,FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product. Involved in the promotion of the floral transition, fertility and silique elongation, but plays only a minor role in elongation of seedling organs. Acts redundantly with GA20OX2. {ECO:0000269|PubMed:18069939}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT5G51810-MONOMER;MetaCyc:AT5G51810-MONOMER;,ARA:AT4G25420-MONOMER;MetaCyc:AT4G25420-MONOMER; 1.14.11.12; 1.14.11.- 42937,43224,33521,33752 Gibberellin 20 oxidase 2 (EC 1.14.11.-) (GA 20-oxidase 2) (Gibberellin C-20 oxidase 2),Gibberellin 20 oxidase 1 (EC 1.14.11.-) (GA 20-oxidase 1) (AtGA20ox1) (Gibberellin C-20 oxidase 1),Gibberellin 20 oxidase 2,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein gibberellin 20-oxidase activity [GO:0045544]; metal ion binding [GO:0046872]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to gibberellin [GO:0009739]; response to karrikin [GO:0080167]; response to red or far red light [GO:0009639]; unidimensional cell growth [GO:0009826],cytoplasm [GO:0005737]; gibberellin 20-oxidase activity [GO:0045544]; metal ion binding [GO:0046872]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; leaf development [GO:0048366]; response to gibberellin [GO:0009739]; short-day photoperiodism, flowering [GO:0048575]; unidimensional cell growth [GO:0009826],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] DEVELOPMENTAL STAGE: Expressed in developing siliques 3-13 days after pollination. {ECO:0000269|PubMed:15927942}. TISSUE SPECIFICITY: Expressed in inflorescence and developing siliques. Detected in seeds, roots, cotyledons and leaves. In seeds, specifically detected at the rim of the embryo and the outer integument. {ECO:0000269|PubMed:15927942, ECO:0000269|PubMed:16905669, ECO:0000269|PubMed:18069939, ECO:0000269|PubMed:7630935}.,TISSUE SPECIFICITY: Highly expressed in stems and inflorescence tissues. Detected in seeds, roots, leaves and siliques. {ECO:0000269|PubMed:18069939, ECO:0000269|PubMed:7630935}. locus:2165341;,locus:2005511; AT5G51810,AT4G25420 gibberellin Gibberellin 20 oxidase 1 (EC 1.14.11.-) (GA 20-oxidase 1) (Gibberellin C-20 oxidase 1) (Os20ox),Gibberellin 20 oxidase 1, putative, expressed (Os03g0856700 protein) (cDNA clone:J023031H24, full insert sequence) P93771,Q10AC7 GAOX1_ORYSJ,Q10AC7_ORYSJ 20ox1 GA20ox-1 Os03g0856700 LOC_Os03g63970 OSJNBa0059G06.22,Os03g0856700 LOC_Os03g63970 Os03g0856700 OSNPB_030856700 FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. {ECO:0000269|Ref.1}. ENOG411E1VX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cellular response to redox state Probable 6-phosphogluconolactonase 3, chloroplastic (6PGL 3) (EC 3.1.1.31),Probable 6-phosphogluconolactonase 4, chloroplastic (6PGL 4) (EC 3.1.1.31),Os09g0529100 protein,Os08g0547100 protein (Fragment) Q6Z9C3,Q69NG5,B9G4P3,A0A0P0XJ60 6PGL3_ORYSJ,6PGL4_ORYSJ,B9G4P3_ORYSJ,A0A0P0XJ60_ORYSJ Os08g0547100 LOC_Os08g43370 OsJ_027038 OsJ_28176 P0544G09.8,Os09g0529100 LOC_Os09g35970 OJ1531_B07.11 OsJ_028924,Os09g0529100 OsJ_30091 OSNPB_090529100,Os08g0547100 OSNPB_080547100 FUNCTION: Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. {ECO:0000250}. ENOG411E1VY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine incorporator (Serinc) NA NA NA NA NA NA NA ENOG411E1VZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0799100 protein A0A0P0VR49 A0A0P0VR49_ORYSJ Os02g0799100 OSNPB_020799100 ENOG411DWS9 BOR2,BOR1 Q9M1P7,Q8VYR7,A8MS82 BOR2_ARATH,BOR1_ARATH,A8MS82_ARATH Probable boron transporter 2,Boron transporter 1,HCO3-transporter family Requires a high level of B. When the B concentration in the medium was reduced to 3 microM the expansion of rosette leaves was severely affected in bor1-1 but not in wild-type plants. In a medium containing 30 microM B the mutant grew normally but showed female sterility whereas the wild type was able to set seeds. These defects of the bor1-1 mutant were not detected with supplementation of 100 microM B. In vivo concentrations of B in bor1-1 mutants were lower than those of the wild type especially in the inflorescence stems. Sensitive to boron starvation-T. Fujiwara-2005 FUNCTION: Probable boron transporter. Boron is essential for maintaining the integrity of plants cell walls (By similarity). {ECO:0000250}.,FUNCTION: Efflux-type boron transporter for xylem loading, responsive of boron translocation from roots to shoots under boron limitation. Under boron excess, BOR1 is transferred from the plasma membrane via the endosomes to the vacuole for degradation. Boron is essential for maintaining the integrity of plants cell walls. {ECO:0000269|PubMed:16805739, ECO:0000269|PubMed:9390427}. R-ATH-1237044;R-ATH-1247673;R-ATH-425381; 78614,78605,81433 Probable boron transporter 2,Boron transporter 1,HCO3-transporter family integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; anion:anion antiporter activity [GO:0015301]; inorganic anion exchanger activity [GO:0005452]; regulation of intracellular pH [GO:0051453]; root development [GO:0048364],endosome [GO:0005768]; integral component of plasma membrane [GO:0005887]; vacuole [GO:0005773]; anion:anion antiporter activity [GO:0015301]; inorganic anion exchanger activity [GO:0005452]; regulation of intracellular pH [GO:0051453]; response to boron-containing substance [GO:0010036],columella [GO:0043674]; cytoplasm [GO:0005737]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; lateral plasma membrane [GO:0016328]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; inorganic anion exchanger activity [GO:0005452]; borate transport [GO:0046713] TISSUE SPECIFICITY: Expressed in proximal side of various root cells, notably in the columella, lateral root cap, epidermis and endodermis in tip and elongation zones of the root. Also detected in the epidermis, cortex, endodermis, and stele cells of the root hair zone. {ECO:0000269|PubMed:12447444, ECO:0000269|PubMed:20194745}. locus:2098033;,locus:2041319; AT3G62270,AT2G47160 boron transporter Boron transporter 1, putative, expressed (Os12g0566000 protein) (cDNA clone:J023062N03, full insert sequence),Os12g0566000 protein (Fragment) Q2QNH0,A0A0P0YBN5,A0A0N7KU82 Q2QNH0_ORYSJ,A0A0P0YBN5_ORYSJ,A0A0N7KU82_ORYSJ Os12g0566000 LOC_Os12g37840 Os12g0566000 OsJ_36533 OSNPB_120566000,Os12g0566000 OSNPB_120566000 ENOG411E1VR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os08g0167400 protein A3BQ04 A3BQ04_ORYSJ Os08g0167400 OsJ_26177 OSNPB_080167400 ENOG411E1VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA leucine-rich repeat receptor-like serine threonine-protein kinase BAM1-like Leucine Rich Repeat family protein, expressed (Os11g0233800 protein) (Similar to receptor-like protein kinase 3) Q53ME4 Q53ME4_ORYSJ Os11g0233800 LOC_Os11g12620 OSNPB_110233800 ENOG411E1VV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os11g0132900 protein (Os11g0133001 protein) (Fragment),Os12g0130200 protein (Fragment) Q0IUV4,A0A0P0Y6V4 Q0IUV4_ORYSJ,A0A0P0Y6V4_ORYSJ Os11g0132900 Os11g0133001 OSNPB_110133001,Os12g0130200 OSNPB_120130200 ENOG411DWSX PAT19,PAT21,PAT20 Q8L5Y5,Q6DR03,Q9LIE4 ZDH17_ARATH,ZDHC3_ARATH,ZDHC8_ARATH Probable protein S-acyltransferase 19 (EC 2.3.1.225) (Probable palmitoyltransferase At4g15080) (Zinc finger DHHC domain-containing protein At4g15080),Protein S-acyltransferase 21 (EC 2.3.1.225) (Probable palmitoyltransferase At2g33640) (Zinc finger DHHC domain-containing protein At2g33640),Probable protein S-acyltransferase 20 (EC 2.3.1.225) (Probable palmitoyltransferase At3g22180) (Zinc finger DHHC domain-containing protein At3g22180) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.5}.,FUNCTION: S-acyltransferase involved in protein lipid modification. {ECO:0000269|PubMed:22968831, ECO:0000269|Ref.6}.,FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.3}. 2.3.1.225; 2.3.1.225 78738,62139,76874 Probable protein S-acyltransferase 19 (EC 2.3.1.225) (Probable palmitoyltransferase At4g15080) (Zinc finger DHHC domain-containing protein At4g15080),Protein S-acyltransferase 21 (EC 2.3.1.225) (Probable palmitoyltransferase At2g33640) (Zinc finger DHHC domain-containing protein At2g33640),Probable protein S-acyltransferase 20 (EC 2.3.1.225) (Probable palmitoyltransferase At3g22180) (Zinc finger DHHC domain-containing protein At3g22180) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706],cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2129655;,locus:2051068;,locus:2090404; AT4G15080,AT2G33640,AT3G22180 zinc finger S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase),DHHC-type zinc finger domain-containing protein-like (Os08g0556400 protein) Q7XP60,Q6ZJ21,Q6ZJ22,A0A0P0XQE0 Q7XP60_ORYSJ,Q6ZJ21_ORYSJ,Q6ZJ22_ORYSJ,A0A0P0XQE0_ORYSJ Os04g0585100 Os04g0585100 OsJ_15928 OSJNBa0013K16.7 OSNPB_040585100,OJ1150_A11.12-2 Os08g0556400 OSNPB_080556400,OJ1150_A11.12-1 Os08g0556400 OSNPB_080556400,Os09g0563250 OSNPB_090563250 ENOG411EDH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF579 NA NA NA NA NA NA NA ENOG411EBX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBX4 LECRK72 O49445 LRK72_ARATH Probable L-type lectin-domain containing receptor kinase VII.2 (Arabidopsis thaliana lectin-receptor kinase d) (AthlecRK-d) (LecRK-VII.2) (EC 2.7.11.1) 2.7.11.1 75711 Probable L-type lectin-domain containing receptor kinase VII.2 (Arabidopsis thaliana lectin-receptor kinase d) (AthlecRK-d) (LecRK-VII.2) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674] AT4G28350 L-type lectin-domain containing receptor kinase NA NA NA NA NA NA NA ENOG411EBX7 Q9LSQ1 LOR13_ARATH Protein LURP-one-related 13 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 20977 Protein LURP-one-related 13 locus:2086062; AT3G16900 Pfam:DUF567 NA NA NA NA NA NA NA ENOG411EBX6 PYL9,PYL7 Q84MC7,Q1ECF1 PYL9_ARATH,PYL7_ARATH Abscisic acid receptor PYL9 (ABI1-binding protein 4) (PYR1-like protein 9) (Regulatory components of ABA receptor 1),Abscisic acid receptor PYL7 (ABI1-binding protein 7) (PYR1-like protein 7) (Regulatory components of ABA receptor 2) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) in an ABA-independent manner but more efficiently when activated by ABA. Confers enhanced sensitivity to ABA (PubMed:19407143, PubMed:23844015, PubMed:21658606). Can be activated only by (+)-ABA but not by (-)-ABA (PubMed:23844015). {ECO:0000269|PubMed:19407143, ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015}.,FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. {ECO:0000250|UniProtKB:O49686}. 20901,23676 Abscisic acid receptor PYL9 (ABI1-binding protein 4) (PYR1-like protein 9) (Regulatory components of ABA receptor 1),Abscisic acid receptor PYL7 (ABI1-binding protein 7) (PYR1-like protein 7) (Regulatory components of ABA receptor 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738] TISSUE SPECIFICITY: Expressed in root tips, vascular tissues, stomata, flowers, pollen tubes and developing seeds. {ECO:0000269|PubMed:19407143}. locus:2035227;,locus:505006424; AT1G01360,AT4G01026 Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411EBX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EBX3 BZIP2 Q9SI15 BZIP2_ARATH bZIP transcription factor 2 (AtbZIP2) (G-box-binding factor 5) (Protein FLORAL TRANSITION AT THE MERISTEM 3) FUNCTION: Transcription factor that binds to specific DNA sequences in target gene promoters. {ECO:0000250|UniProtKB:O65683}. 19104 bZIP transcription factor 2 (AtbZIP2) (G-box-binding factor 5) (Protein FLORAL TRANSITION AT THE MERISTEM 3) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the shoot meristem during vegetative to reproductive phase transition. {ECO:0000269|PubMed:22319055}. locus:2053124; AT2G18160 basic leucine-zipper 2 NA NA NA NA NA NA NA ENOG411EBX2 PBL24 Q1PE89,A0A1P8B6K3,A0A1P8B6K7,A0A1P8B6K6 PBL24_ARATH,A0A1P8B6K3_ARATH,A0A1P8B6K7_ARATH,A0A1P8B6K6_ARATH Probable serine/threonine-protein kinase PBL24 (EC 2.7.11.1) (PBS1-like protein 24),Protein kinase superfamily protein FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 43217,26557,33174,33199 Probable serine/threonine-protein kinase PBL24 (EC 2.7.11.1) (PBS1-like protein 24),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2119350; AT4G13190 STYKc NA NA NA NA NA NA NA ENOG411EBXM Q9SZN5,Q9C5F6,Q0WV01,A0A1P8B5D2,A0A1P8B5D8,A0A1P8B5D6 Q9SZN5_ARATH,Q9C5F6_ARATH,Q0WV01_ARATH,A0A1P8B5D2_ARATH,A0A1P8B5D8_ARATH,A0A1P8B5D6_ARATH At4g38560 (Phospholipase like protein) (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein (Putative phospholipase),Phospholipase like protein (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein 58778,69682,58990,58313,73740,63338 At4g38560 (Phospholipase like protein) (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein (Putative phospholipase),Phospholipase like protein (Phospholipase-like protein (PEARLI 4) family protein),Phospholipase-like protein (PEARLI 4) family protein chromatin binding [GO:0003682]; mitotic sister chromatid cohesion [GO:0007064]; regulation of gene expression [GO:0010468] locus:2121159;,locus:2121169; AT4G38560,AT4G38550 Arabidopsis phospholipase-like protein (PEARLI 4) NA NA NA NA NA NA NA ENOG411EBXN F26K24.6 Q9SF21 Q9SF21_ARATH At3g11770 (F26K24.6 protein) (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) (Uncharacterized protein At3g11770) 22956 At3g11770 (F26K24.6 protein) (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) (Uncharacterized protein At3g11770) cytoplasm [GO:0005737]; nucleus [GO:0005634]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2081526; AT3G11770 Pfam:3_5_exonuc NA NA NA NA NA NA NA ENOG411EBXI P93753,Q9SI22,P93754,O80778,Q3E900 P93753_ARATH,Q9SI22_ARATH,P93754_ARATH,O80778_ARATH,Q3E900_ARATH At2g41920/T6D20.18 (Protein kinase superfamily protein) (Uncharacterized protein At2g41920),Protein kinase superfamily protein (Uncharacterized protein At2g05060),Protein kinase superfamily protein (Uncharacterized protein At2g41910),Protein kinase family protein (Protein kinase superfamily protein) (Uncharacterized protein At2g34290),Protein kinase superfamily protein 37075,35499,42910,30483,38132 At2g41920/T6D20.18 (Protein kinase superfamily protein) (Uncharacterized protein At2g41920),Protein kinase superfamily protein (Uncharacterized protein At2g05060),Protein kinase superfamily protein (Uncharacterized protein At2g41910),Protein kinase family protein (Protein kinase superfamily protein) (Uncharacterized protein At2g34290),Protein kinase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2064602;,locus:2044958;,locus:2064612;,locus:2040844;,locus:2180280; AT2G41920,AT2G05060,AT2G41910,AT2G34290,AT5G27790 kinase family NA NA NA NA NA NA NA ENOG411EBXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBXK Q9LZ51,A0A1P8BHA2,A0A1P8BHA3 Q9LZ51_ARATH,A0A1P8BHA2_ARATH,A0A1P8BHA3_ARATH UDP-glucose 6-dehydrogenase (Uncharacterized protein T22P11_100),UDP-glucose 6-dehydrogenase 20539,28717,21642 UDP-glucose 6-dehydrogenase (Uncharacterized protein T22P11_100),UDP-glucose 6-dehydrogenase locus:2181738; AT5G02510 CUE domain NA NA NA NA NA NA NA ENOG411EBXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like NA NA NA NA NA NA NA ENOG411EBXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sterol methyltransferase C-terminal NA NA NA NA NA NA NA ENOG411EBXD NSP3,NSP1,NSP2,NSP4 O04318,Q9SDM9,O49326,O04316 JAL27_ARATH,JAL28_ARATH,JAL21_ARATH,JAL29_ARATH Nitrile-specifier protein 3 (AtNSP3) (Jacalin-related lectin 27),Nitrile-specifier protein 1 (AtNSP1) (Jacalin-related lectin 28),Nitrile-specifier protein 2 (AtNSP2) (Jacalin-related lectin 21),Nitrile-specifier protein 4 (AtNSP4) (Jacalin-related lectin 29) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18987211}.,DISRUPTION PHENOTYPE: No simple nitriles produced. {ECO:0000269|PubMed:18987211}. FUNCTION: Promotes simple nitriles, but not epithionitrile or thiocyanate formation. Converts allylglucosinolate and benzylglucosinolate to their corresponding simple nitriles in the presence of myrosinase. {ECO:0000269|PubMed:18987211}.,FUNCTION: Responsible for constitutive and herbivore-induced simple nitrile formation. Promotes simple nitriles, but not epithionitrile or thiocyanate formation. Converts allylglucosinolate, 4-methylsulfinylbutylglucosinolate, 4-methylthiobutylglucosinolate and benzylglucosinolate to their corresponding simple nitriles in the presence of myrosinase. {ECO:0000269|PubMed:18987211}. MISCELLANEOUS: Not dependent on the presence of Fe(2+) or Fe(3+).,MISCELLANEOUS: Contains a second mannose-binding lectin domain not present in other members of the family. 51232,51670,51215,67604 Nitrile-specifier protein 3 (AtNSP3) (Jacalin-related lectin 27),Nitrile-specifier protein 1 (AtNSP1) (Jacalin-related lectin 28),Nitrile-specifier protein 2 (AtNSP2) (Jacalin-related lectin 21),Nitrile-specifier protein 4 (AtNSP4) (Jacalin-related lectin 29) chloroplast [GO:0009507]; carbohydrate binding [GO:0030246]; glucosinolate catabolic process [GO:0019762]; nitrile biosynthetic process [GO:0080028],carbohydrate binding [GO:0030246]; mRNA binding [GO:0003729]; glucosinolate catabolic process [GO:0019762]; nitrile biosynthetic process [GO:0080028]; response to herbivore [GO:0080027],carbohydrate binding [GO:0030246]; glucosinolate catabolic process [GO:0019762]; nitrile biosynthetic process [GO:0080028],plasmodesma [GO:0009506]; carbohydrate binding [GO:0030246]; glucosinolate catabolic process [GO:0019762]; nitrile biosynthetic process [GO:0080028] locus:2088289;,locus:2088304;,locus:2046560;,locus:2088329; AT3G16390,AT3G16400,AT2G33070,AT3G16410 Promotes simple nitriles but not epithionitrile or thiocyanate formation. Converts allylglucosinolate and benzylglucosinolate to their corresponding simple nitriles in the presence of myrosinase NA NA NA NA NA NA NA ENOG411EBXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EBXF D6PK Q9FG74 D6PK_ARATH Serine/threonine-protein kinase D6PK (EC 2.7.11.1) (D6 protein kinase) (Serine/threonine-protein kinase AGC1-1) (Serine/threonine-protein kinase AtPK64) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the quadruple d6pk, d6pkl1, d6pkl2 and d6pkl3 mutants are deficient in lateral root formation and mildly agravitropic, have fused or single cotyledons and narrow and twisted leaves, form few axillary shoots, are almost infertile and impaired in phototropic hypocotyl bending when exposed to lateral white light. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. Quadruple mutant displays defects in many aspects of development. Defects include:abnormal leaves leaves are narrow and twisted; reduced number of axillary shoots and reduced fertility. In addition mutants also display single or fused cotyldons reduced number of lateral roots and are mildy agravitropic. FUNCTION: Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation. D6PK-mediated PIN phosphorylation promotes auxin transport in the hypocotyl and this is a prerequisite for PHOT1-dependent hypocotyl bending. Phosphorylates PIN1, PIN2, PIN3, PIN4 and PIN7 in vitro and PIN1 in vivo. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. 2.7.11.1 54816 Serine/threonine-protein kinase D6PK (EC 2.7.11.1) (D6 protein kinase) (Serine/threonine-protein kinase AGC1-1) (Serine/threonine-protein kinase AtPK64) basal plasma membrane [GO:0009925]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphatidylinositol phosphate binding [GO:1901981]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; auxin-activated signaling pathway [GO:0009734]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; regulation of establishment of cell polarity [GO:2000114]; root hair initiation [GO:0048766] locus:2178388; AT5G55910 S_TKc NA NA NA NA NA NA NA ENOG411EBXA O82500 Y4117_ARATH Putative disease resistance protein At4g11170 126083 Putative disease resistance protein At4g11170 mitochondrion [GO:0005739]; ADP binding [GO:0043531]; defense response [GO:0006952]; response to ozone [GO:0010193]; signal transduction [GO:0007165] locus:2136108; AT4G11170 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EBXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411EBXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA anthocyanidin 53-O-glucosyltransferase-like NA NA NA NA NA NA NA ENOG411EBXY ATHB-9,ATHB-14 O04292,O04291,A0A1P8BCK8 ATBH9_ARATH,ATB14_ARATH,A0A1P8BCK8_ARATH Homeobox-leucine zipper protein ATHB-9 (HD-ZIP protein ATHB-9) (Homeodomain transcription factor ATHB-9) (Protein PHAVOLUTA),Homeobox-leucine zipper protein ATHB-14 (HD-ZIP protein ATHB-14) (Homeodomain transcription factor ATHB-14) (Protein PHABULOSA),START domain protein Defects in embryonic cell patterning in essentially all double mutants. Pleotropic cotyledon phenotypes. Large increase in phenotypic penetrance.,Leaves are moderately adaxialized stipules surrounding the entire leaf base. Ectopic meristems are commonly formed at the base of the abaxial side of leaves. FUNCTION: Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}.,FUNCTION: Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. 92402,93218,21186 Homeobox-leucine zipper protein ATHB-9 (HD-ZIP protein ATHB-9) (Homeodomain transcription factor ATHB-9) (Protein PHAVOLUTA),Homeobox-leucine zipper protein ATHB-14 (HD-ZIP protein ATHB-14) (Homeodomain transcription factor ATHB-14) (Protein PHABULOSA),START domain protein nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; adaxial/abaxial axis specification [GO:0009943]; cell differentiation [GO:0030154]; determination of bilateral symmetry [GO:0009855]; embryonic pattern specification [GO:0009880]; integument development [GO:0080060]; meristem initiation [GO:0010014]; polarity specification of adaxial/abaxial axis [GO:0009944]; primary shoot apical meristem specification [GO:0010072]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; adaxial/abaxial pattern specification [GO:0009955]; cell differentiation [GO:0030154]; determination of bilateral symmetry [GO:0009855]; integument development [GO:0080060]; meristem initiation [GO:0010014]; polarity specification of adaxial/abaxial axis [GO:0009944]; primary shoot apical meristem specification [GO:0010072]; transcription, DNA-templated [GO:0006351],lipid binding [GO:0008289] DEVELOPMENTAL STAGE: Expressed at the youngest stages of ovule development, predominantly to the adaxial side of the ovule primordium. Later, expression becomes restricted to a region in the distal chalaza. When the integuments initiate, expressed in the inner integument, with highest expression in the inner layer of the inner integument. Expressed in the vegetative shoot apical meristem (SAM) and initially throughout the presumptive cotyledons. At the globular stage, just before cotyledon outgrowth, expressed at high levels in cotyledon adaxial domains. Expression is lost from the SAM of torpedo stage embryos but is regained late in embryogenesis, extending to young primordia after germination, and becoming progressively restricted to the adaxial domain and the vasculature. Preferentially expressed in the adaxial domain of the developing leaf. Expressed throughout the plastochron 0 (P0) leaf primordium and expression increases in P1 to become preferentially localized to the adaxial leaf domain by the P2 stage (polar expression). {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016}. TISSUE SPECIFICITY: Expressed in the center of the meristem and on the adaxial side of the leaves. {ECO:0000269|PubMed:11395776}. locus:2028140;,locus:2061544; AT1G30490,AT2G34710 MEKHLA domain NA NA NA NA NA NA NA ENOG411EBXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain NA NA NA NA NA NA NA ENOG411EBXZ MAP2A,MAP2B Q9FV49,Q56Y85,A0A1P8AY11 MAP21_ARATH,MAP22_ARATH,A0A1P8AY11_ARATH Methionine aminopeptidase 2A (MAP 2A) (MetAP 2A) (EC 3.4.11.18) (Peptidase M),Methionine aminopeptidase 2B (MAP 2B) (MetAP 2B) (EC 3.4.11.18) (Peptidase M),Methionine aminopeptidase 2 (MAP 2) (MetAP 2) (EC 3.4.11.18) (Peptidase M) FUNCTION: Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000255|HAMAP-Rule:MF_03175}.,FUNCTION: Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|HAMAP-Rule:MF_03175, ECO:0000256|SAAS:SAAS00684756}.; FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. R-ATH-2514859; 3.4.11.18 49395,49060,36023 Methionine aminopeptidase 2A (MAP 2A) (MetAP 2A) (EC 3.4.11.18) (Peptidase M),Methionine aminopeptidase 2B (MAP 2B) (MetAP 2B) (EC 3.4.11.18) (Peptidase M),Methionine aminopeptidase 2 (MAP 2) (MetAP 2) (EC 3.4.11.18) (Peptidase M) cytoplasm [GO:0005737]; aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloexopeptidase activity [GO:0008235]; N-terminal protein amino acid modification [GO:0031365],cytoplasm [GO:0005737]; aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloexopeptidase activity [GO:0008235]; protein processing [GO:0016485],cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; metalloaminopeptidase activity [GO:0070006]; protein initiator methionine removal [GO:0070084] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in roots. {ECO:0000269|PubMed:11060042}. locus:2051849;,locus:2080507; AT2G44180,AT3G59990 Removes the N-terminal methionine from nascent proteins (By similarity) NA NA NA NA NA NA NA ENOG411EBXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium Bile acid symporter family NA NA NA NA NA NA NA ENOG411EBXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBXV CRRSP2 Q8GUJ2 CRRS2_ARATH Cysteine-rich repeat secretory protein 2 (Cysteine-rich repeat protein HWI1) (Plasmodesmata-located protein 5) (PDLP5) (Protein HOPW1-1-INDUCED 1) DISRUPTION PHENOTYPE: No growth defects. Two-fold lower callose accumulation in plasmodesmata than wild type. More susceptible to infection by the plant pathogen Pseudomonas syringae pv. maculicola. Level of salicylic acid (SA) is comparable to wild type but plasmodesmata closure is impaired. However, overexpression leads to growth inhibition and chlorosis in seedling stage, with levels of SA fifteen-fold higher than wild type including all forms of SA, and probably triggering cell death. Ectopic expression affects trafficking of MP from TMV, and shows four-fold accumulation of callose in plasmodesmata than wild type. {ECO:0000269|PubMed:21934146, ECO:0000269|PubMed:23749844}. FUNCTION: Modulates cell-to-cell trafficking. Has a positive role in innate immunity. Negative regulator of plasmodesmata permeability triggered by salicylic acid during immune responses, through regulation of callose deposition. Delays the trafficking of Tobacco Mosaic Virus (TMV) movement protein (MP). {ECO:0000269|PubMed:21934146, ECO:0000269|PubMed:23749844}. 31804 Cysteine-rich repeat secretory protein 2 (Cysteine-rich repeat protein HWI1) (Plasmodesmata-located protein 5) (PDLP5) (Protein HOPW1-1-INDUCED 1) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; defense response to bacterium [GO:0042742]; response to other organism [GO:0051707]; transport [GO:0006810]; viral process [GO:0016032] TISSUE SPECIFICITY: Highly expressed in inflorescence nodes and rosette senescent leaves. Mostly expressed in cell wall junctions between leaf epidermal and mesophyl cells, and to a lesser extent at the cross walls between epidermal or cortex cells within the hypocotyl (at protein level). Low vascular expression in seedling and mature leaf, but high expression in senescing leaves (at protein level). {ECO:0000269|PubMed:19704520, ECO:0000269|PubMed:21934146}. locus:2033614; AT1G70690 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EBXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-phosphate dependent enzyme NA NA NA NA NA NA NA ENOG411EBXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Fasciclin-like arabinogalactan-protein 2-like (Os09g0476800 protein) (cDNA clone:002-144-C01, full insert sequence) Q651Y5 Q651Y5_ORYSJ Os09g0476800 Os09g0476800 OSNPB_090476800 P0556A05.20 ENOG411EBXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0174800 protein (Putative CC-NBS-LRR resistance protein MLA13),Os08g0174800 protein,Os08g0176633 protein Q6Z4U3,A0A0P0XCU6,A0A0P0XCG9 Q6Z4U3_ORYSJ,A0A0P0XCU6_ORYSJ,A0A0P0XCG9_ORYSJ OSJNBa0054L03.31-1 Os08g0174800 OSNPB_080174800,Os08g0174800 OSNPB_080174800,Os08g0176633 OSNPB_080176633 ENOG411DPMY RABG3A,RABG3B Q948K8,O04157,F4JKR6,F4JKR7 RAG3A_ARATH,RAG3B_ARATH,F4JKR6_ARATH,F4JKR7_ARATH Ras-related protein RABG3a (AtRABG3a) (Ras-related protein Rab76) (AtRab76),Ras-related protein RABG3b (AtRABG3b) (Ras-related protein Rab75) (AtRab75),RAB GTPase homolog G3A FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}.,FUNCTION: Intracellular vesicle trafficking and protein transport. Functions in autophagy. Involved in xylem and tracheary element differentiation. {ECO:0000269|PubMed:20659276}. MISCELLANEOUS: Plants silencing RABG3B display a significant decrease in the number of both protoxylem and metaxylem cells in the basal region of inflorescence stems. {ECO:0000305|PubMed:20659276}. R-ATH-6798695;R-ATH-8854214;R-ATH-8876198; 22751,22945,24024,23368 Ras-related protein RABG3a (AtRABG3a) (Ras-related protein Rab76) (AtRab76),Ras-related protein RABG3b (AtRABG3b) (Ras-related protein Rab75) (AtRab75),RAB GTPase homolog G3A plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],plasma membrane [GO:0005886]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; positive regulation of autophagy [GO:0010508]; programmed cell death involved in cell development [GO:0010623]; protein transport [GO:0015031]; tracheary element differentiation [GO:1905177]; xylem development [GO:0010089],Golgi apparatus [GO:0005794]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924],GTP binding [GO:0005525]; GTPase activity [GO:0003924] TISSUE SPECIFICITY: Expressed in xylem cells of inflorescence stems. {ECO:0000269|PubMed:20659276}. locus:2199716;,locus:2118500; AT4G09720,AT1G22740 ras-related protein Os01g0714900 protein (Putative rab7 protein) (cDNA clone:J013000E15, full insert sequence),Os05g0536900 protein (cDNA clone:001-102-H02, full insert sequence) Q5JLU1,Q0DGE4 Q5JLU1_ORYSJ,Q0DGE4_ORYSJ Os01g0714900 Os01g0714900 B1131B07.11 OSNPB_010714900,Os05g0536900 Os05g0536900 OsJ_19355 OSNPB_050536900 ENOG411DPMX RPN12A,RPN12B Q9SGW3,Q9FHY0 PSD8A_ARATH,PSD8B_ARATH 26S proteasome non-ATPase regulatory subunit 8 homolog A (26S proteasome regulatory subunit RPN12a) (AtRPN12a) (26S proteasome regulatory subunit S14 homolog A),Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B (26S proteasome regulatory subunit RPN12b) (AtRPN12b) (26S proteasome regulatory subunit S14 homolog B) DISRUPTION PHENOTYPE: Decreased rate of leaf formation, reduced root elongation, delayed skotomorphogenesis and altered growth responses to exogenous cytokinins. Increased sensitivity to heat shock and increased tolerance to oxidative stress. Decreased 26S proteasome accumulation. In flowers and cotyledons, epidermal cells were larger than those in the wild type. {ECO:0000269|PubMed:11826296, ECO:0000269|PubMed:17971041, ECO:0000269|PubMed:19321709}. The rpn12a-1 mutant produces both the WT RPN12a protein and a RPN12a(1-186):ARP(exon2):NPTII fusion protein. The mutant form of the protein can coelute with subunits of the 26S proteasome from the regulatory and core particles and there is no increase in total steady state levels of ubiquitinated proteins in homozygous mutant seedlings. This mutant has seedling growth defects elevated anthocyanin levels abnormal leaf root development delayed skotomorphogenesis altered cytokinin responses and reduced auxin sensitivity in their roots.,The rpn12a-1 mutant has defects in ubiquitin-mediated proteolysis via the 26S proteasome rendering it more sensitive to misfolded proteins that are degraded in a 26S-proteasome / Ub-dependent manner. However it has increased levels of the 20S core particle of the proteasome and exhibits reduced sensitivity to oxidative stress presumably since oxidatively damaged proteins can be degraded in a 20S proteasome-dependent but 26S proteasome /Ub-independent manner. Low penetrance of decreased cotyledon number; Red hypocotyls and petioles due to anthocyanin accumulation; Short roots; Delayed rosette growth; Late flowering; Altered response to cytokinin; Resistant to auxin-R. Vierstra-2002 FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. May help to control the degradation of one or more factors that repress cytokinin signaling. Plays an important role for balancing cell expansion with cell proliferation rates during shoot development. {ECO:0000269|PubMed:11826296, ECO:0000269|PubMed:17971041, ECO:0000269|PubMed:19321709, ECO:0000269|PubMed:19812900}.,FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250|UniProtKB:Q9SGW3}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 30706,26732 26S proteasome non-ATPase regulatory subunit 8 homolog A (26S proteasome regulatory subunit RPN12a) (AtRPN12a) (26S proteasome regulatory subunit S14 homolog A),Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B (26S proteasome regulatory subunit RPN12b) (AtRPN12b) (26S proteasome regulatory subunit S14 homolog B) chloroplast envelope [GO:0009941]; cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, lid subcomplex [GO:0008541]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; flower development [GO:0009908]; leaf development [GO:0048366]; post-embryonic root development [GO:0048528]; proteasome assembly [GO:0043248]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163]; regulation of anthocyanin biosynthetic process [GO:0031540]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; response to heat [GO:0009408]; response to misfolded protein [GO:0051788]; skotomorphogenesis [GO:0009647],cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome regulatory particle, lid subcomplex [GO:0008541]; proteasome assembly [GO:0043248]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2019504;,locus:2165750; AT1G64520,AT5G42040 26S proteasome non-atpase regulatory subunit 26S proteasome regulatory particle non-ATPase subunit12 (Os07g0435100 protein) (cDNA clone:006-304-H08, full insert sequence) (cDNA clone:006-306-A10, full insert sequence) (cDNA clone:J033034D03, full insert sequence) Q8W423 Q8W423_ORYSJ OsRPN12 Os07g0435100 OsJ_24032 OSNPB_070435100 P0673E01.24 ENOG411EF0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411ED0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411EIAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED0G F4JCN4 F4JCN4_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 30391 Plant invertase/pectin methylesterase inhibitor superfamily protein cell periphery [GO:0071944]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2079162; AT3G47670 PMEI NA NA NA NA NA NA NA ENOG411E0I8 MSG15.17,MJB21.4 Q8RXR3,Q9FJ85,F4K315,A0A1P8BEQ4 Q8RXR3_ARATH,Q9FJ85_ARATH,F4K315_ARATH,A0A1P8BEQ4_ARATH Agenet domain-containing protein (Uncharacterized protein At5g52070),Agenet domain-containing protein 30940,25023,34815,24689 Agenet domain-containing protein (Uncharacterized protein At5g52070),Agenet domain-containing protein locus:2173118;,locus:2165467; AT5G52070,AT5G42670 agenet domain-containing protein Os05g0140600 protein (Fragment) A0A0P0WI00 A0A0P0WI00_ORYSJ Os05g0140600 OSNPB_050140600 ENOG411E0I0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor Os01g0763200 protein (Putative transcription factor) Q8LR43 Q8LR43_ORYSJ Os01g0763200 OSNPB_010763200 P0512C01.45 ENOG411E0I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2/ERF domain protein (Ethylene responsive protein-like) (Os09g0287000 protein) (cDNA clone:001-206-F09, full insert sequence) (cDNA clone:J013163J01, full insert sequence),AP2 domain containing protein, expressed (Os12g0603300 protein),AP2 domain containing protein (AP2 domain containing protein, expressed) (Os03g0183000 protein) (Putative AP2 domain containing protein) (cDNA clone:001-020-F02, full insert sequence) (cDNA clone:J033075D23, full insert sequence),Os03g0183000 protein Q6EN65,Q2QMI3,Q10QU5,A0A0P0VTX1 Q6EN65_ORYSJ,Q2QMI3_ORYSJ,Q10QU5_ORYSJ,A0A0P0VTX1_ORYSJ Os09g0287000 Os09g0287000 OsJ_28694 OSNPB_090287000 P0453B09.7 P0663H05.23,Os12g0603300 LOC_Os12g41060 OSNPB_120603300,Os03g0183000 LOC_Os03g08470 Os03g0183000 OSJNBa0032G08.15 OSNPB_030183000,Os03g0183000 OSNPB_030183000 ENOG411E0IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0467900 protein,Os02g0468900 protein A0A0P0XVI7,A0A0P0VJ00 A0A0P0XVI7_ORYSJ,A0A0P0VJ00_ORYSJ Os10g0467900 OSNPB_100467900,Os02g0468900 OSNPB_020468900 ENOG411E0IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANTH domain Clathrin assembly protein-like (Os01g0881100 protein) (cDNA clone:002-148-A09, full insert sequence) Q8LJJ6 Q8LJJ6_ORYSJ Os01g0881100 Os01g0881100 OsJ_04299 OSNPB_010881100 P0018C10.58 ENOG411E0IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) (Fragment) Q0DG51 Q0DG51_ORYSJ Os05g0552700 Os05g0552700 OSNPB_050552700 ENOG411E0IJ NFYC9,NFYC3 Q8L4B2,Q9ZVL3 NFYC9_ARATH,NFYC3_ARATH Nuclear transcription factor Y subunit C-9 (AtNF-YC-9) (Transcriptional activator HAP5C),Nuclear transcription factor Y subunit C-3 (AtNF-YC-3) FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.,FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 25640,24312 Nuclear transcription factor Y subunit C-9 (AtNF-YC-9) (Transcriptional activator HAP5C),Nuclear transcription factor Y subunit C-3 (AtNF-YC-3) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; gibberellic acid mediated signaling pathway [GO:0009740]; positive regulation of photomorphogenesis [GO:2000306]; regulation of seed germination [GO:0010029]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; gibberellic acid mediated signaling pathway [GO:0009740]; positive regulation of photomorphogenesis [GO:2000306]; regulation of seed germination [GO:0010029]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. locus:2036034;,locus:2010980; AT1G08970,AT1G54830 Nuclear transcription factor Y subunit NA NA NA NA NA NA NA ENOG411E0IK A0A1I9LND0,Q9C8T3,Q94K13 A0A1I9LND0_ARATH,Q9C8T3_ARATH,Q94K13_ARATH Aldolase-type TIM barrel family protein,Ribulose-phosphate 3-epimerase (EC 5.1.3.1) ARA:AT1G63290-MONOMER;,ARA:AT3G01850-MONOMER; R-ATH-71336; 5.1.3.1 21257,24111,24042 Aldolase-type TIM barrel family protein,Ribulose-phosphate 3-epimerase (EC 5.1.3.1) racemase and epimerase activity, acting on carbohydrates and derivatives [GO:0016857]; carbohydrate metabolic process [GO:0005975],cytosol [GO:0005829]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ribulose-phosphate 3-epimerase activity [GO:0004750]; cellular carbohydrate metabolic process [GO:0044262]; pentose catabolic process [GO:0019323]; pentose-phosphate shunt, non-oxidative branch [GO:0009052],cytosol [GO:0005829]; metal ion binding [GO:0046872]; ribulose-phosphate 3-epimerase activity [GO:0004750]; cellular carbohydrate metabolic process [GO:0044262]; pentose catabolic process [GO:0019323]; pentose-phosphate shunt, non-oxidative branch [GO:0009052] locus:2038456;,locus:2082349; AT1G63290,AT3G01850 ribulose-phosphate 3-epimerase Ribulose-phosphate 3-epimerase, cytoplasmic isoform (EC 5.1.3.1) (Cyt-RPEase) (Pentose-5-phosphate 3-epimerase) (PPE) (RPEcyt) (Ribulose-5-phosphate-epimerase),Os09g0505700 protein Q9SE42,A0A0P0XQA9 RPE1_ORYSJ,A0A0P0XQA9_ORYSJ Os09g0505700 LOC_Os09g32810,Os09g0505700 OSNPB_090505700 FUNCTION: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. ENOG411E0IM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain containing protein Os09g0552500 protein (cDNA clone:002-151-B06, full insert sequence),Os09g0552600 protein (cDNA clone:002-149-H02, full insert sequence) Q0IZS6,Q0IZS5 Q0IZS6_ORYSJ,Q0IZS5_ORYSJ Os09g0552500 Os09g0552500 OSNPB_090552500,Os09g0552600 Os09g0552600 OSNPB_090552600 ENOG411E0IN Q9LP52 Q9LP52_ARATH F28N24.8 protein (Transcription initiation factor TFIID subunit, putative (DUF688)) (Uncharacterized protein At1g29240) 65123 F28N24.8 protein (Transcription initiation factor TFIID subunit, putative (DUF688)) (Uncharacterized protein At1g29240) translation initiation factor activity [GO:0003743] locus:2029969; AT1G29240 Protein of unknown function (DUF688) NA NA NA NA NA NA NA ENOG411ED0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L1p/L10e family NA NA NA NA NA NA NA ENOG411E0IA PBL17 Q8H1E3 PBL17_ARATH Probable serine/threonine-protein kinase PBL17 (EC 2.7.11.1) (PBS1-like protein 17) FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 49205 Probable serine/threonine-protein kinase PBL17 (EC 2.7.11.1) (PBS1-like protein 17) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] locus:2060167; AT2G07180 serine threonine-protein kinase Os06g0663200 protein Q654A0 Q654A0_ORYSJ Os06g0663200 Os06g0663200 OsJ_22256 OSJNBb0065C04.33 OSNPB_060663200 ENOG411E0IB F28M11.120 Q9SN25,A0A1I9LT82 Q9SN25_ARATH,A0A1I9LT82_ARATH TTF-type zinc finger protein with HAT dimerization domain-containing protein (Uncharacterized protein AT4g10200) (Uncharacterized protein F28M11.120),Zinc finger MYM-type-like protein 84877,46212 TTF-type zinc finger protein with HAT dimerization domain-containing protein (Uncharacterized protein AT4g10200) (Uncharacterized protein F28M11.120),Zinc finger MYM-type-like protein cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; multicellular organism development [GO:0007275],nucleic acid binding [GO:0003676] locus:2124675; AT4G10200 ZnF_TTF NA NA NA NA NA NA NA ENOG411E0ID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2 DP1 HVA22 family protein expressed HVA22-like protein Q7XGB3,Q0DTF8,Q10P18,Q10A20 Q7XGB3_ORYSJ,Q0DTF8_ORYSJ,Q10P18_ORYSJ,Q10A20_ORYSJ Os10g0177400 LOC_Os10g09870 OSNPB_100177400,Os03g0250200 Os03g0250200 OSNPB_030250200,Os03g0250200 LOC_Os03g14610 OSNPB_030250200,LOC_Os10g09870 Os10g0177400 OSNPB_100177400 ENOG411E0IF MEE6.19,MEE6.20 Q8VYR6,Q9FLL7,Q0WQB8,A0A1R7T3H9,A0A1P8BDF4,F4JWY1 Q8VYR6_ARATH,Q9FLL7_ARATH,Q0WQB8_ARATH,A0A1R7T3H9_ARATH,A0A1P8BDF4_ARATH,F4JWY1_ARATH Esterase/lipase/thioesterase family protein (Uncharacterized protein At5g41120),Esterase/lipase/thioesterase family protein (Gb|AAC64874.1),Esterase/lipase/thioesterase family protein (Uncharacterized protein At5g41130),Esterase/lipase/thioesterase family protein 77380,77850,77904,81087,68894,80618 Esterase/lipase/thioesterase family protein (Uncharacterized protein At5g41120),Esterase/lipase/thioesterase family protein (Gb|AAC64874.1),Esterase/lipase/thioesterase family protein (Uncharacterized protein At5g41130),Esterase/lipase/thioesterase family protein plastoglobule [GO:0010287]; diacylglycerol O-acyltransferase activity [GO:0004144]; phytol metabolic process [GO:0033306],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2163091;,locus:2163101; AT5G41120,AT5G41130 acyltransferase-like protein Os09g0509500 protein A0A0P0XQC2 A0A0P0XQC2_ORYSJ Os09g0509500 OSNPB_090509500 ENOG411EIAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF825) NA NA NA NA NA NA NA ENOG411EIAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIA0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSM8 T1E3_70 Q9LZ26,Q9LST0 Q9LZ26_ARATH,Q9LST0_ARATH Aspartyl aminopeptidase (Aspartyl aminopeptidase-like protein) (Zn-dependent exopeptidases superfamily protein),AT5g60160/f15l12_20 (Aspartyl aminopeptidase) (Zn-dependent exopeptidases superfamily protein) 57861,52426 Aspartyl aminopeptidase (Aspartyl aminopeptidase-like protein) (Zn-dependent exopeptidases superfamily protein),AT5g60160/f15l12_20 (Aspartyl aminopeptidase) (Zn-dependent exopeptidases superfamily protein) chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; metalloaminopeptidase activity [GO:0070006]; zinc ion binding [GO:0008270]; peptide metabolic process [GO:0006518],cytoplasm [GO:0005737]; cytosol [GO:0005829]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; metalloaminopeptidase activity [GO:0070006]; zinc ion binding [GO:0008270]; peptide metabolic process [GO:0006518]; response to cadmium ion [GO:0046686] locus:2175423;,locus:2143990; AT5G04710,AT5G60160 aspartyl Os01g0967900 protein (Putative aspartyl aminopeptidase),Aspartyl aminopeptidase, putative, expressed (Os12g0236500 protein),Os01g0967900 protein Q8SA06,Q2QVB4,A0A0P0VDA5 Q8SA06_ORYSJ,Q2QVB4_ORYSJ,A0A0P0VDA5_ORYSJ Os01g0967900 Os01g0967900 OJ1656_A11.4-1 OsJ_04900 OSNPB_010967900,LOC_Os12g13390 Os12g0236500 OsJ_35672 OSNPB_120236500,Os01g0967900 OSNPB_010967900 ENOG411DSM9 emb1441 Q9LTX7 Q9LTX7_ARATH Gb|AAF56406.1 (Zinc knuckle (CCHC-type) family protein) Embryo defective; Globular-D. Meinke-2002 121431 Gb|AAF56406.1 (Zinc knuckle (CCHC-type) family protein) nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2158844; AT5G49930 nuclear export mediator factor Os12g0564600 protein (Zinc knuckle family protein, putative, expressed) Q2QNI2 Q2QNI2_ORYSJ LOC_Os12g37720 Os12g0564600 OSNPB_120564600 ENOG411DSM0 MSJ1.11 Q9FMF9 Q9FMF9_ARATH Nuclear protein-like (Splicing factor) R-ATH-72163;R-ATH-72165; 141450 Nuclear protein-like (Splicing factor) catalytic step 2 spliceosome [GO:0071013]; chloroplast [GO:0009507]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; mRNA binding [GO:0003729]; spliceosomal complex assembly [GO:0000245] locus:2173333; AT5G64270 splicing factor Os02g0146400 protein (Fragment),Os02g0147300 protein,Os02g0478900 protein,Os02g0142300 protein (Fragment) Q0E3Z8,A0A0P0VEX6,A0A0P0VEP5,A0A0P0VIZ4,A0A0P0VEK6 Q0E3Z8_ORYSJ,A0A0P0VEX6_ORYSJ,A0A0P0VEP5_ORYSJ,A0A0P0VIZ4_ORYSJ,A0A0P0VEK6_ORYSJ Os02g0146400 Os02g0146400 OSNPB_020146400,Os02g0146400 OSNPB_020146400,Os02g0147300 OSNPB_020147300,Os02g0478900 OSNPB_020478900,Os02g0142300 OSNPB_020142300 ENOG411DSM1 Q8S2T1 DDPS6_ARATH Dehydrodolichyl diphosphate synthase 6 (Dedol-PP synthase 6) (EC 2.5.1.-) FUNCTION: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. ARA:AT2G17570-MONOMER; 2.5.1.- 33628 Dehydrodolichyl diphosphate synthase 6 (Dedol-PP synthase 6) (EC 2.5.1.-) polyprenyltransferase activity [GO:0002094]; polyprenol biosynthetic process [GO:0016094]; protein glycosylation [GO:0006486] locus:2053903; AT2G17570 Dehydrodolichyl diphosphate synthase Alkyl transferase (EC 2.5.1.-) Q9XJ03,Q69J27 Q9XJ03_ORYSJ,Q69J27_ORYSJ Os06g0167400 Os06g0167400 OsJ_20261 OSJNBa0033B09.5 OSNPB_060167400 P0680A03.26,Os07g0607700 Os07g0607700 OSJNBa0072I06.28 OSNPB_070607700 P0493C06.42 ENOG411DSM2 DHAPRD Q9SCX9 GPDA1_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] 1, chloroplastic (EC 1.1.1.8) FUNCTION: Involved in glycerolipid metabolism. {ECO:0000250}. PATHWAY: Membrane lipid metabolism; glycerophospholipid metabolism. R-ATH-1483166; 1.1.1.8 43791 Glycerol-3-phosphate dehydrogenase [NAD(+)] 1, chloroplastic (EC 1.1.1.8) chloroplast [GO:0009507]; glycerol-3-phosphate dehydrogenase complex [GO:0009331]; glycerol-3-phosphate dehydrogenase [NAD+] activity [GO:0004367]; NAD binding [GO:0051287]; protein homodimerization activity [GO:0042803]; carbohydrate metabolic process [GO:0005975]; glycerol-3-phosphate catabolic process [GO:0046168]; glycerophospholipid metabolic process [GO:0006650]; phospholipid biosynthetic process [GO:0008654] TISSUE SPECIFICITY: Expressed in young seedlings, flowers and siliques. Expressed at low levels in roots. {ECO:0000269|Ref.1}. locus:2168758; AT5G40610 glycerol-3-phosphate dehydrogenase NAD Glycerol-3-phosphate dehydrogenase [NAD(+)] (EC 1.1.1.8) Q5JME6 Q5JME6_ORYSJ Os01g0971600 OSNPB_010971600 P0518C01.13 ENOG411DSM3 MGP1 Q9SJ12,F4III4 ATP7_ARATH,F4III4_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial,MALE GAMETOPHYTE DEFECTIVE 1 Complete male gametophyte defective; Female gametophyte defective-D. Ye-2010 FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain (By similarity). {ECO:0000250}. 27597,25160 Probable ATP synthase 24 kDa subunit, mitochondrial,MALE GAMETOPHYTE DEFECTIVE 1 chloroplast [GO:0009507]; membrane [GO:0016020]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; proton-transporting ATP synthase complex, coupling factor F(o) [GO:0045263]; cobalt ion binding [GO:0050897]; copper ion binding [GO:0005507]; zinc ion binding [GO:0008270]; pollen development [GO:0009555]; proton transport [GO:0015992],pollen development [GO:0009555] locus:2052464; AT2G21870 ATP synthase 24 kDa subunit ATP synthase (Mitochondrial ATP synthase) (Os02g0131300 protein) (Putative ATP synthase) (cDNA clone:J013089B14, full insert sequence) Q6ZG90 Q6ZG90_ORYSJ Os02g0131300 Os02g0131300 OJ1007_D04.18 OsJ_05252 OSNPB_020131300 ENOG411DSM4 A0A1I9LNI9,Q9LSE3,A0A1I9LNI8,A0A1I9LNJ3 A0A1I9LNI9_ARATH,Q9LSE3_ARATH,A0A1I9LNI8_ARATH,A0A1I9LNJ3_ARATH RING/U-box superfamily protein,Putative RING zinc finger protein (RING/U-box superfamily protein) 69241,85232,70155,80600 RING/U-box superfamily protein,Putative RING zinc finger protein (RING/U-box superfamily protein) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872],metal ion binding [GO:0046872] locus:2090827; AT3G26730 RING finger protein 10-like Os02g0516600 protein (Putative ring finger protein 10),Os02g0516600 protein (Fragment) Q67UM6,A0A0P0VJJ5 Q67UM6_ORYSJ,A0A0P0VJJ5_ORYSJ Os02g0516600 OSJNBb0071O21.25 OSNPB_020516600,Os02g0516600 OSNPB_020516600 ENOG411DSM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB POZ and MATH domain-containing protein Os08g0226400 protein (Zinc finger POZ domain protein-like),Os08g0129400 protein,Os08g0226800 protein,Os08g0226100 protein,Os08g0226000 protein Q7F0Z3,Q84UR6,A0A0P0XDJ3,A0A0P0XD89,A0A0P0XE17 Q7F0Z3_ORYSJ,Q84UR6_ORYSJ,A0A0P0XDJ3_ORYSJ,A0A0P0XD89_ORYSJ,A0A0P0XE17_ORYSJ OJ1221_H04.118 Os08g0226400 OsJ_26474 OSNPB_080226400 P0494D11.40,P0582D05.114 Os08g0129400 OSNPB_080129400,Os08g0226800 OSNPB_080226800,Os08g0226100 OSNPB_080226100,Os08g0226000 OSNPB_080226000 ENOG411DSM6 NUP58 Q8RWH9 NUP58_ARATH Nuclear pore complex protein NUP58 (Nucleoporin 58) (Protein TRANSCURVATA1) DISRUPTION PHENOTYPE: Pleiotropic phenotype, including early flowering, increased petiole length and leaf lamina folding toward the abaxial surface in an asymmetrical manner relative to the primary vein. Hypersensitivity to 2,4-dichlorophenoxyacetic acid and paclobutrazol. {ECO:0000269|PubMed:23840761}. FUNCTION: Involved in nucleocytoplasmic trafficking. May have regulatory roles in the gibberellin pathway, in auxin signaling and in light perception. {ECO:0000269|PubMed:23840761}. 56542 Nuclear pore complex protein NUP58 (Nucleoporin 58) (Protein TRANSCURVATA1) nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; nuclear localization sequence binding [GO:0008139]; nucleocytoplasmic transporter activity [GO:0005487]; mRNA transport [GO:0051028]; protein import into nucleus [GO:0006606] DEVELOPMENTAL STAGE: Detected at all developmental stages. {ECO:0000269|PubMed:23840761}. TISSUE SPECIFICITY: Ubiquitous. Higherst expression in cauline leaves, lowest in roots. {ECO:0000269|PubMed:23840761}. locus:2115055; AT4G37130 Hydroxyproline-rich glycoprotein family protein Os09g0453500 protein (Putative nucleoporin p58 nucleoporin p45) (cDNA clone:J033119I02, full insert sequence),Os03g0765400 protein (Fragment) Q67UZ2,A0A0P0W3F0 Q67UZ2_ORYSJ,A0A0P0W3F0_ORYSJ Os09g0453500 Os09g0453500 OsJ_29603 OSNPB_090453500 P0488D02.24,Os03g0765400 OSNPB_030765400 ENOG411DSM7 Q8H184 PT106_ARATH Probable sugar phosphate/phosphate translocator At1g06470 46452 Probable sugar phosphate/phosphate translocator At1g06470 endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643]; UDP-glucose transport [GO:0015786] locus:2009190; AT1G06470 Sugar phosphate phosphate translocator Os06g0153200 protein (cDNA clone:J023129O11, full insert sequence),Os01g0749900 protein (cDNA clone:J033133C05, full insert sequence),Os06g0153200 protein B7EL20,Q0JJB5,A0A0P0WT48 B7EL20_ORYSJ,Q0JJB5_ORYSJ,A0A0P0WT48_ORYSJ Os06g0153200 OSNPB_060153200,Os01g0749900 Os01g0749900 OSNPB_010749900 ENOG411DSMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lactamase_B Os03g0642900 protein,Os03g0643000 protein A0A0P0W0K9,A0A0P0W0P6 A0A0P0W0K9_ORYSJ,A0A0P0W0P6_ORYSJ Os03g0642900 OSNPB_030642900,Os03g0643000 OSNPB_030643000 ENOG411DSMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4-coumarate--CoA ligase-like 4-coumarate--CoA ligase-like 4 (EC 6.2.1.-) Q10S72 4CLL4_ORYSJ 4CLL4 Os03g0132000 LOC_Os03g04000 OsJ_09299 ENOG411DSMJ LACS9,LACS8 Q9CAP8,Q9SJD4,A0A1P8AQK5 LACS9_ARATH,LACS8_ARATH,A0A1P8AQK5_ARATH Long chain acyl-CoA synthetase 9, chloroplastic (EC 6.2.1.3),Long chain acyl-CoA synthetase 8 (EC 6.2.1.3),Long chain acyl-CoA synthetase 9 DISRUPTION PHENOTYPE: Reduced amount long-chain fatty acid (LCFA). {ECO:0000269|PubMed:12177483}. FUNCTION: Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. {ECO:0000269|PubMed:12177483}.,FUNCTION: Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT1G77590-MONOMER;MetaCyc:AT1G77590-MONOMER;,ARA:AT2G04350-MONOMER;MetaCyc:AT2G04350-MONOMER; R-ATH-75876; 6.2.1.3 76176,78343,59722 Long chain acyl-CoA synthetase 9, chloroplastic (EC 6.2.1.3),Long chain acyl-CoA synthetase 8 (EC 6.2.1.3),Long chain acyl-CoA synthetase 9 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; membrane [GO:0016020]; plastid [GO:0009536]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; fatty acid metabolic process [GO:0006631],chloroplast envelope [GO:0009941]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; fatty acid metabolic process [GO:0006631],catalytic activity [GO:0003824]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Highly expressed in developing seeds and young rosette leaves. {ECO:0000269|PubMed:12177483}. locus:2204765;,locus:2058384; AT1G77590,AT2G04350 Long chain acyl-CoA synthetase Long chain acyl-CoA synthetase (Os05g0317200 protein) (Putative long chain acyl-CoA synthetase) (cDNA clone:J023100L19, full insert sequence),Os11g0169800 protein (Fragment),AMP-binding enzyme family protein, expressed (Os12g0168700 protein) (cDNA clone:J013041H23, full insert sequence) (cDNA clone:J013042P14, full insert sequence),Os12g0168700 protein (Fragment) Q5W6W7,Q0IUB6,Q2QX58,A0A0P0Y7G7 Q5W6W7_ORYSJ,Q0IUB6_ORYSJ,Q2QX58_ORYSJ,A0A0P0Y7G7_ORYSJ Os05g0317200 OSJNBa0065C11.10 OSNPB_050317200,Os11g0169800 OSNPB_110169800,Os12g0168700 LOC_Os12g07110 Os12g0168700 OSNPB_120168700,Os12g0168700 OSNPB_120168700 ENOG411DSMK UPL5 Q9SU29 UPL5_ARATH E3 ubiquitin-protein ligase UPL5 (Ubiquitin-protein ligase 5) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL5) DISRUPTION PHENOTYPE: Accelerated senescence. {ECO:0000269|PubMed:20409006}. Early senescence-U. Zentgraf-2010 FUNCTION: E3 ubiquitin protein ligase that regulates leaf senescence through ubiquitination and subsequent degradation of WRKY53. {ECO:0000269|PubMed:20409006}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-983168; 2.3.2.B9; 2.3.2.26 100365 E3 ubiquitin-protein ligase UPL5 (Ubiquitin-protein ligase 5) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL5) cytoplasm [GO:0005737]; carbohydrate binding [GO:0030246]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; leaf senescence [GO:0010150]; protein ubiquitination [GO:0016567]; response to hydrogen peroxide [GO:0042542]; response to jasmonic acid [GO:0009753] locus:2135630; AT4G12570 Ubiquitin-protein ligase Os09g0484300 protein A0A0P0XNA9,A0A0N7KR07 A0A0P0XNA9_ORYSJ,A0A0N7KR07_ORYSJ Os09g0484300 OSNPB_090484300 ENOG411DSMM XBCP3 Q0WVJ5 Q0WVJ5_ARATH At1g09850 (Papain-like cysteine peptidase XBCP3) (Xylem bark cysteine peptidase 3) 48073 At1g09850 (Papain-like cysteine peptidase XBCP3) (Xylem bark cysteine peptidase 3) endoplasmic reticulum [GO:0005783]; extracellular space [GO:0005615]; lysosome [GO:0005764]; vacuole [GO:0005773]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2024362; AT1G09850 cysteine Os05g0508300 protein Q6L4X7 Q6L4X7_ORYSJ Os05g0508300 OSJNBb0108E17.2 OSNPB_050508300 ENOG411DSMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os06g0294600 protein (Putative cytochrome P450 monooxygenase),Os03g0249600 protein Q5ZA77,A0A0P0VVJ1 Q5ZA77_ORYSJ,A0A0P0VVJ1_ORYSJ Os06g0294600 OSNPB_060294600 P0036B02.9,Os03g0249600 OSNPB_030249600 ENOG411DSMA A0A1I9LMZ0,A0A1I9LMY8,A0A1I9LPW2,A0A1P8B8E8,F4J3Q2,A0A1I9LPW3,B3H6P6,A0A1I9LPW4 A0A1I9LMZ0_ARATH,A0A1I9LMY8_ARATH,A0A1I9LPW2_ARATH,A0A1P8B8E8_ARATH,F4J3Q2_ARATH,A0A1I9LPW3_ARATH,B3H6P6_ARATH,A0A1I9LPW4_ARATH Exportin-4 protein 6192,5713,139703,10752,123934,129345,14223,128930 Exportin-4 protein cytoplasm [GO:0005737]; nuclear pore [GO:0005643]; nuclear export signal receptor activity [GO:0005049]; Ran GTPase binding [GO:0008536]; protein export from nucleus [GO:0006611] locus:2100920;,locus:4515103505; AT3G04490,AT4G38092 Inherit from KOG: exportin 4 Expressed protein (Os10g0477000 protein) Q337K5 Q337K5_ORYSJ LOC_Os10g33710 Os10g0477000 OSNPB_100477000 ENOG411DSMB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os02g0805250 protein A0A0P0VQW6 A0A0P0VQW6_ORYSJ Os02g0805250 OSNPB_020805250 ENOG411DSMC MLE8.5 Q9FL61 Q9FL61_ARATH At5g24130 (Polypyrimidine tract-binding-like protein) (Uncharacterized protein At5g24130/MLE8_5) 34681 At5g24130 (Polypyrimidine tract-binding-like protein) (Uncharacterized protein At5g24130/MLE8_5) integral component of membrane [GO:0016021] locus:2167418; AT5G24130 NA Os02g0257200 protein (cDNA clone:J033130P11, full insert sequence) Q6ETQ8 Q6ETQ8_ORYSJ Os02g0257200 Os02g0257200 OSNPB_020257200 P0613F08.20 ENOG411DSMD STP1,STP11,STP10,STP9 P23586,Q9FMX3,Q9LT15,Q9SX48,A0A1P8AWV3 STP1_ARATH,STP11_ARATH,STP10_ARATH,STP9_ARATH,A0A1P8AWV3_ARATH Sugar transport protein 1 (Glucose transporter) (Hexose transporter 1),Sugar transport protein 11 (Hexose transporter 11),Sugar transport protein 10 (Hexose transporter 10),Sugar transport protein 9 (Hexose transporter 9),Sugar transporter 9 FUNCTION: Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. {ECO:0000269|PubMed:11135118, ECO:0000269|PubMed:1633849, ECO:0000269|PubMed:2209537, ECO:0000269|PubMed:7920712, ECO:0000269|PubMed:8051137}.,FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. {ECO:0000269|PubMed:15565288}.,FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}.,FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. {ECO:0000269|PubMed:12970485}. 57611,56725,56200,56280,41386 Sugar transport protein 1 (Glucose transporter) (Hexose transporter 1),Sugar transport protein 11 (Hexose transporter 11),Sugar transport protein 10 (Hexose transporter 10),Sugar transport protein 9 (Hexose transporter 9),Sugar transporter 9 integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; glucose transmembrane transporter activity [GO:0005355]; monosaccharide transmembrane transporter activity [GO:0015145]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; monosaccharide transport [GO:0015749],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; D-glucose:proton symporter activity [GO:0055055]; galactose transmembrane transporter activity [GO:0005354]; hexose:proton symporter activity [GO:0009679]; mannose transmembrane transporter activity [GO:0015578]; cellular response to glucose stimulus [GO:0071333]; glucose import [GO:0046323]; high-affinity hexose transport [GO:0008646],integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891]; carbohydrate transport [GO:0008643] DEVELOPMENTAL STAGE: Transcripts accumulate in mature pollen before and during germination, but translation starts only when pollen germination initiates, and continues in pollen tubes. {ECO:0000269|PubMed:12970485}. TISSUE SPECIFICITY: Mostly expressed in young leaves, especially in guard cells (at protein level). Also present in roots. {ECO:0000269|PubMed:12508063, ECO:0000269|PubMed:12972665, ECO:0000269|PubMed:2209537}.,TISSUE SPECIFICITY: Specifically expressed in germinating pollen and pollen tube (at protein level). {ECO:0000269|PubMed:15565288}.,TISSUE SPECIFICITY: Pollen specific (at protein level). {ECO:0000269|PubMed:12970485}. locus:2202044;,locus:2166781;,locus:2092221;,locus:2011957; AT1G11260,AT5G23270,AT3G19940,AT1G50310 Sugar carrier protein Sugar transport protein MST3 (Monosaccharide transporter 3) (OsMST3) (Sugar:proton symporter MST3),Sugar transport protein MST5 (Monosaccharide transporter 5) (OsMST5) (Sugar:proton symporter MST5),Sugar transport protein MST6 (Monosaccharide transporter 6) (OsMST5) (Sugar:proton symporter MST6),Os09g0297300 protein Q7EZD7,Q6ZKF0,Q6Z401,A0A0P0XKW0 MST3_ORYSJ,MST5_ORYSJ,MST6_ORYSJ,A0A0P0XKW0_ORYSJ MST3 Os07g0106200 LOC_Os07g01560 B1317D11.119-1 OsJ_22802 P0617C02.124-1,MST5 Os08g0178200 LOC_Os08g08070 OJ1120_C08.22 OsJ_26248,MST6 Os07g0559700 LOC_Os07g37320 OsJ_24726 P0567H04.25,Os09g0297300 OSNPB_090297300 FUNCTION: Mediates active uptake of hexoses by sugar:proton symport. Can transport glucose, xylose and 3-O-methylglucose. May be involved in the accumulation of monosaccharides required for cell wall synthesis during root development. {ECO:0000269|PubMed:11038054}.,FUNCTION: Mediates active uptake of hexoses by sugar:proton symport. Can transport glucose, xylose and 3-O-methylglucose (PubMed:12723603). May play a role at the early stage of seed development (Ref.5). {ECO:0000269|PubMed:12723603, ECO:0000269|Ref.5}.,FUNCTION: Mediates active uptake of hexoses by sugar:proton symport (Probable). Can transport glucose, fructose, mannose, galactose, xylose and ribose (PubMed:18506478). {ECO:0000269|PubMed:18506478, ECO:0000305|PubMed:18506478}. ENOG411DSME PTAC12 F4IHY7 PTA12_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 (pTAC12) (Plastid-encoded RNA polymerase-associated protein 5) (PEP-associated protein 5) (Protein HEMERA) DISRUPTION PHENOTYPE: Seedling lethal without exogenous carbon sources (PubMed:16326926, PubMed:20603003). Decrease of total chlorophyll content as well as a decrease in the chlorophyll a:b ratio. Absence of grana thylakoids. Altered expression profiles of plastid genes (PubMed:16326926). Impaired in phytochrome (both PHYA and PHYB) responses, especially to red and far-red light, such as hypocotyl growth inhibition, proteolysis of phytochrome A and phytochrome-interacting transcription factors (PubMed:20603003). {ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20603003}. Seedling lethal (inferred from pigment defect); Albino-R. Oelmuller-2006 FUNCTION: Involved in plastid gene expression (PubMed:16326926). Required in the nucleus for the initiation of photomorphogenesis mediated by phytochromes (PHYs) (e.g. PHYA and PHYB) by mediating PHYs localization to photobodies, especially in response to red and far-red light, and implicating phytochrome nuclear bodies as sites of proteolysis for PHYs and PIFs proteins (e.g. PIF1 and PIF3). Acts downstream of PHYs and upstream of DET1 (PubMed:20603003, PubMed:22895253). {ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20603003, ECO:0000269|PubMed:22895253}. 60895 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 (pTAC12) (Plastid-encoded RNA polymerase-associated protein 5) (PEP-associated protein 5) (Protein HEMERA) chloroplast [GO:0009507]; nucleoid [GO:0009295]; nucleus [GO:0005634]; plastid chromosome [GO:0009508]; plastid-encoded plastid RNA polymerase complex [GO:0000427]; positive regulation of red or far-red light signaling pathway [GO:0090228]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to light stimulus [GO:0009416]; response to red light [GO:0010114]; transcription from plastid promoter [GO:0042793] DEVELOPMENTAL STAGE: In young seedlings, expressed predominantly in cotyledons, at the top of the hypocotyl, and in the root tip, regardless of light conditions. In older seedlings, confined to unexpanded cotyledons of dark-grown seedlings. {ECO:0000269|PubMed:20603003}. TISSUE SPECIFICITY: Mostly expressed in cotyledons, leaves, stems and flowers, but barely in roots. {ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20603003}. locus:2062286; AT2G34640 NA Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic Q0JIZ1 PTA12_ORYSJ PTAC12 Os01g0769900 LOC_Os01g56350 OsJ_03603 P0665A11.10 FUNCTION: Required for the activity of the plastid-encoded RNA polymerase (PEP) and full expression of genes transcribed by PEP. Required for the proper build-up and formation of the PEP-complex. Binds single-stranded (ss) DNA and RNA, but not double-stranded (ds) DNA. {ECO:0000250|UniProtKB:B4FZ81}. ENOG411DSMF F4HRE0 F4HRE0_ARATH Transmembrane protein 27079 Transmembrane protein integral component of membrane [GO:0016021] AT1G45688 Late embryogenesis abundant protein Os04g0689500 protein (Fragment) Q0J8S7,A0A0P0WGP3 Q0J8S7_ORYSJ,A0A0P0WGP3_ORYSJ Os04g0689500 Os04g0689500 OSNPB_040689500,Os04g0689500 OSNPB_040689500 ENOG411DSMG LPXA,LpxA Q9SU91,A0A1P8B6N8,A0A1P8B6P1 LPXA_ARATH,A0A1P8B6N8_ARATH,A0A1P8B6P1_ARATH Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial (UDP-N-acetylglucosamine acyltransferase) (EC 2.3.1.129) (Protein LIPID X A) (AtLpxA),Bacterial transferase hexapeptide repeat-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants lacking LPXA accumulate very low levels of 2,3-diacylglucosamine-1-phosphate. {ECO:0000269|PubMed:21709257}. FUNCTION: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses (Potential). {ECO:0000305}. PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 1/6. {ECO:0000269|PubMed:21709257}. ARA:AT4G29540-MONOMER; 2.3.1.129; 2.3.1.129 36714,26644,28783 Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial (UDP-N-acetylglucosamine acyltransferase) (EC 2.3.1.129) (Protein LIPID X A) (AtLpxA),Bacterial transferase hexapeptide repeat-containing protein mitochondrion [GO:0005739]; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [GO:0008780]; lipid A biosynthetic process [GO:0009245]; lipid X metabolic process [GO:2001289],acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [GO:0008780]; lipid biosynthetic process [GO:0008610],integral component of membrane [GO:0016021]; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [GO:0008780]; lipid biosynthetic process [GO:0008610] locus:2134368; AT4G29540 acyl- acyl-carrier-protein --UDP-N-acetylglucosamine Os01g0722100 protein (UDP-acetylglucosamine acyltransferase-like) (cDNA clone:J013069K22, full insert sequence) Q5JMA6 Q5JMA6_ORYSJ Os01g0722100 Os01g0722100 OSNPB_010722100 P0022F10.1 P0690B02.28 ENOG411DSMX PME22 Q9M9W7 PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22 [Includes: Pectinesterase inhibitor 22 (Pectin methylesterase inhibitor 22); Pectinesterase 22 (PE 22) (EC 3.1.1.11) (Pectin methylesterase 22) (AtPME22)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G05620-MONOMER; 3.1.1.11 60806 Putative pectinesterase/pectinesterase inhibitor 22 [Includes: Pectinesterase inhibitor 22 (Pectin methylesterase inhibitor 22); Pectinesterase 22 (PE 22) (EC 3.1.1.11) (Pectin methylesterase 22) (AtPME22)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] locus:2078047; AT3G05620 pectinesterase Pectinesterase (EC 3.1.1.11) Q9S767 Q9S767_ORYSJ Os01g0254300 OSNPB_010254300 P0705D01.14 P0711E10.4 ENOG411DSMY ALG10 Q8L638 ALG10_ARATH Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase (EC 2.4.1.256) (Alpha-1,2-glucosyltransferase ALG10 homolog) (Protein HOMOLOG OF YEAST ALG10) DISRUPTION PHENOTYPE: Small plants with reduced leaf size. Hypoglycosylation of glycoproteins leading to ER stress and activation of the unfolded protein response (UPR). Increased sensitivity to salt stress. {ECO:0000269|PubMed:21707802}. FUNCTION: Adds the third glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation. Transfers glucose from dolichyl phosphate glucose (Dol-P-Glc) onto the lipid-linked oligosaccharide Glc(2)Man(9)GlcNAc(2)-PP-Dol. Can complement an ALG10-deficient yeast mutant. {ECO:0000269|PubMed:21707802}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:GQT-1436-MONOMER; 2.4.1.256 58439 Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase (EC 2.4.1.256) (Alpha-1,2-glucosyltransferase ALG10 homolog) (Protein HOMOLOG OF YEAST ALG10) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity [GO:0004583]; glucosyltransferase activity [GO:0046527]; dolichol-linked oligosaccharide biosynthetic process [GO:0006488]; leaf development [GO:0048366]; protein N-linked glycosylation [GO:0006487]; response to salt stress [GO:0009651] locus:2180162; AT5G02410 Dol-P-Glc Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-12-glucosyltransferase-like Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase (EC 2.4.1.256) (Fragment) Q0JBY1,A0A0P0WC64 Q0JBY1_ORYSJ,A0A0P0WC64_ORYSJ Os04g0503700 Os04g0503700 OSNPB_040503700,Os04g0503700 OSNPB_040503700 ENOG411DSMZ GWD3,PWD Q6ZY51,B3H4K8 PWD_ARATH,B3H4K8_ARATH Phosphoglucan, water dikinase, chloroplastic (EC 2.7.9.5),Chloroplastidic phosphoglucan, water dikinase (ATGWD3) Elevated starch levels-G. Ritte-2005 FUNCTION: Mediates the incorporation of phosphate into starch-like phospho-alpha-glucan, mostly at the C-3 position of glucose units. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability. {ECO:0000269|PubMed:15618411, ECO:0000269|PubMed:15686522}. MISCELLANEOUS: The reaction takes place in three steps, mediated by a phosphocarrier histidine residue located on the surface of the central domain. The two first partial reactions are catalyzed at an active site located on the C-terminal domain, and the third partial reaction is catalyzed at an active site located on the N-terminal domain. For catalytic turnover, the central domain swivels from the concave surface of the C-terminal domain to that of the N-terminal domain (By similarity). {ECO:0000250}. ARA:AT5G26570-MONOMER;MetaCyc:AT5G26570-MONOMER; 2.7.9.5 131323,96316 Phosphoglucan, water dikinase, chloroplastic (EC 2.7.9.5),Chloroplastidic phosphoglucan, water dikinase (ATGWD3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; ATP binding [GO:0005524]; carbohydrate kinase activity [GO:0019200]; metal ion binding [GO:0046872]; phosphoglucan, water dikinase activity [GO:0051752]; starch binding [GO:2001070]; protein autophosphorylation [GO:0046777]; starch catabolic process [GO:0005983]; starch metabolic process [GO:0005982],kinase activity [GO:0016301]; starch binding [GO:2001070] TISSUE SPECIFICITY: In all starch containing tissues (e.g. roots, leaves, stems, inflorescence and siliques). {ECO:0000269|PubMed:15686522}. locus:2151089; AT5G26570 Phosphoglucan water dikinase Phosphoglucan, water dikinase, chloroplastic (EC 2.7.9.5),Os12g0297500 protein (Fragment) Q2QTC2,A0A0P0Y9F7 PWD_ORYSJ,A0A0P0Y9F7_ORYSJ GWD3 PWD Os12g0297500 LOC_Os12g20150,Os12g0297500 OSNPB_120297500 FUNCTION: Mediates the incorporation of phosphate into starch-like phospho-alpha-glucan, mostly at the C-3 position of glucose units. May be required for starch degradation, suggesting that the phosphate content of starch regulates its degradability (By similarity). {ECO:0000250}. MISCELLANEOUS: The reaction takes place in three steps, mediated by a phosphocarrier histidine residue located on the surface of the central domain. The two first partial reactions are catalyzed at an active site located on the C-terminal domain, and the third partial reaction is catalyzed at an active site located on the N-terminal domain. For catalytic turnover, the central domain swivels from the concave surface of the C-terminal domain to that of the N-terminal domain (By similarity). {ECO:0000250}. ENOG411DSMP ARABIDOPSIS IAP-LIKE PROTEIN Q9SHI0 Q9SHI0_ARATH F20D23.9 protein (IAP-like protein 1) (Uncharacterized protein At1g17210) 103090 F20D23.9 protein (IAP-like protein 1) (Uncharacterized protein At1g17210) cytosol [GO:0005829]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; zinc ion binding [GO:0008270] locus:2020437; AT1G17210 Zinc ion binding Expressed protein (Os03g0785300 protein),Os07g0150500 protein,Os03g0785300 protein (Fragment) Q10CF1,Q6ZLP6,A0A0P0W3T0 Q10CF1_ORYSJ,Q6ZLP6_ORYSJ,A0A0P0W3T0_ORYSJ Os03g0785300 LOC_Os03g57160 OSNPB_030785300,Os07g0150500 Os07g0150500 OJ1027_G06.28 OsJ_23108 OSNPB_070150500,Os03g0785300 OSNPB_030785300 ENOG411DSMQ ARAC10,ARAC8,RAC10,ROP10 O82481,Q9SU67,A0A1P8BCM4,A0A1I9LSZ9 RAC10_ARATH,RAC8_ARATH,A0A1P8BCM4_ARATH,A0A1I9LSZ9_ARATH Rac-like GTP-binding protein ARAC10 (GTPase protein ROP11),Rac-like GTP-binding protein ARAC8 (GTPase protein ROP10),RAC-like 10,RHO-related protein from plants 10 FUNCTION: Involved in local disassembly of cortical microtubules when associated with ICR5 and KIN13A. {ECO:0000269|PubMed:22984069, ECO:0000269|PubMed:24280391}.,FUNCTION: Acts as a negative regulator of abscisic acid (ABA) responses. {ECO:0000269|PubMed:12417701}. R-ATH-194840; 23879,23069,21342,20116 Rac-like GTP-binding protein ARAC10 (GTPase protein ROP11),Rac-like GTP-binding protein ARAC8 (GTPase protein ROP10),RAC-like 10,RHO-related protein from plants 10 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; secondary cell wall [GO:0009531]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein kinase binding [GO:0019901]; protein phosphatase binding [GO:0019903]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; plant-type cell wall organization [GO:0009664]; small GTPase mediated signal transduction [GO:0007264],intracellular [GO:0005622]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; small GTPase mediated signal transduction [GO:0007264],intracellular [GO:0005622]; membrane [GO:0016020]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; small GTPase mediated signal transduction [GO:0007264] locus:2170778;,locus:2097905; AT5G62880,AT3G48040 rac-like GTP-binding protein Rac-like GTP-binding protein 3 (OsRac3),Os06g0234200 protein (Small GTP-binding protein OsRac3-like) (cDNA clone:001-111-A05, full insert sequence) (cDNA clone:J013098K11, full insert sequence) Q6Z808,Q67VA2 RAC3_ORYSJ,Q67VA2_ORYSJ RAC3 Os02g0742200 LOC_Os02g50860 OsJ_08342 P0585G03.19,Os06g0234200 OSJNBa0080E19.8-2 OSJNBb0061B07.23-2 OSNPB_060234200 FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. ENOG411DSMR T3F12.1 O22270,Q8VY48,Q9LM14 O22270_ARATH,Q8VY48_ARATH,Q9LM14_ARATH AT4G08690 protein (At4g08690) (Putative phosphoglyceride transfer protein) (Sec14p-like phosphatidylinositol transfer family protein),Sec14p-like phosphatidylinositol transfer family protein (Uncharacterized protein At1g22180),F16L1.9 protein (Sec14p-like phosphatidylinositol transfer family protein) 34433,28994,36155 AT4G08690 protein (At4g08690) (Putative phosphoglyceride transfer protein) (Sec14p-like phosphatidylinositol transfer family protein),Sec14p-like phosphatidylinositol transfer family protein (Uncharacterized protein At1g22180),F16L1.9 protein (Sec14p-like phosphatidylinositol transfer family protein) locus:2138606;,locus:2015066; AT4G08690,AT1G22180 SEC14 cytosolic factor family protein Os02g0752000 protein (Putative polyphosphoinositide binding protein Ssh2),Os02g0752000 protein (Fragment) Q6Z8I8,A0A0P0VPQ5 Q6Z8I8_ORYSJ,A0A0P0VPQ5_ORYSJ Os02g0752000 Os02g0752000 OJ1288_G09.1 OsJ_08408 OSNPB_020752000 P0431B06.42,Os02g0752000 OSNPB_020752000 ENOG411DSMS GCL1 Q9FJN7,A0A1P8BCM9 GCL1_ARATH,A0A1P8BCM9_ARATH LanC-like protein GCL1 (G protein-coupled receptor 2-like protein 1) (Protein GCR2-like 1),GCR2-like 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17894782, ECO:0000269|PubMed:18714360}. FUNCTION: May play a role in signaling. May be not involved in abscisic acid (ABA) signaling. {ECO:0000269|PubMed:17894782, ECO:0000269|PubMed:18714360}. 46824,34156 LanC-like protein GCL1 (G protein-coupled receptor 2-like protein 1) (Protein GCR2-like 1),GCR2-like 1 extrinsic component of membrane [GO:0019898]; plasma membrane [GO:0005886]; signal transduction [GO:0007165] locus:2171800; AT5G65280 lanC-like protein Lanthionine synthetase C-like protein, expressed (Os10g0497900 protein),Lanthionine synthetase C-like protein, expressed (Os10g0497900 protein) (cDNA clone:J033048L17, full insert sequence) Q337H0,Q337G9 Q337H0_ORYSJ,Q337G9_ORYSJ Os10g0497900 LOC_Os10g35480 OSNPB_100497900 ENOG411DSMT DDM1 Q9XFH4 DDM1_ARATH ATP-dependent DNA helicase DDM1 (EC 3.6.4.12) (Protein CHROMATIN REMODELING 1) (AtCHR1) (CHR01) (Protein DECREASED DNA METHYLATION 1) (AtDDM1) (Protein SOMNIFEROUS 1) (SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1) DISRUPTION PHENOTYPE: Reactivated transcription of heavily methylated silent loci, via chromatin demethylation. Hypomethylated chromatin; gain of histone H3 'Lys-4' methylation (H3K4me) but depletion of histone H3 'Lys-9' methylation (H3K9me). Altered leaf shape, increased cauline leaf number, and delayed flowering onset (due to FWA derepression). Accumulates developmental abnormalities and transcription derepression by slowly inducing heritable lesions (hopymethylation) at unlinked loci. Derepressed paternally inherited MEA locus in male gametophytes and seeds. Reactivation of several silent retrotransposons. Smaller chromocenters with reduced heterochromatin amount. Causes a striking decondensation of centromeric heterochromatin, a redistribution of the remaining methylation of DNA, and a drastic change in the pattern of histone modification. Abnormal subcellular localization of MBD proteins (e.g. MBD2, MBD5, MBD6 and MBD7). Smaller seeds in male inherited disruption, but larger seeds in female inherited ones. The heritable and cumulative hypermethylation and silencing of BNS, leading to the bonsai phenotype, requires the hypomethylation of the flanking LINE transposon. {ECO:0000269|PubMed:10319870, ECO:0000269|PubMed:10580004, ECO:0000269|PubMed:10715322, ECO:0000269|PubMed:10939915, ECO:0000269|PubMed:11148284, ECO:0000269|PubMed:11238379, ECO:0000269|PubMed:11346800, ECO:0000269|PubMed:11779837, ECO:0000269|PubMed:12077425, ECO:0000269|PubMed:12194816, ECO:0000269|PubMed:12370435, ECO:0000269|PubMed:12403775, ECO:0000269|PubMed:12456661, ECO:0000269|PubMed:12472695, ECO:0000269|PubMed:12609046, ECO:0000269|PubMed:12663548, ECO:0000269|PubMed:14608503, ECO:0000269|PubMed:14630972, ECO:0000269|PubMed:14691539, ECO:0000269|PubMed:15269773, ECO:0000269|PubMed:15514067, ECO:0000269|PubMed:15516340, ECO:0000269|PubMed:15805479, ECO:0000269|PubMed:15968513, ECO:0000269|PubMed:17012404, ECO:0000269|PubMed:17082818, ECO:0000269|PubMed:17144899, ECO:0000269|PubMed:17339215, ECO:0000269|PubMed:17627280, ECO:0000269|PubMed:18467467, ECO:0000269|PubMed:19529764, ECO:0000269|PubMed:7870578, ECO:0000269|PubMed:8316832, ECO:0000269|PubMed:8901594, ECO:0000269|PubMed:9450349, ECO:0000269|PubMed:9611181, ECO:0000269|PubMed:9620857, ECO:0000269|PubMed:9927473}. Phenotype not described.,Sensitive to gamma-irradiation and UV.,Typical mutant phenotype of demethylation.,Restoration of hygromycin resistance through release from gene silencing.,The luminescence response of the ros1/ ros1::ddm1/ddm1 double mutant was much higher than that of ros1/ros1::DDM1/DDM1 plants but was still lower than that of ROS1/ROS1::DDM1/DDM1 plants. Decreased DNA methylation; Variety of morphological defects upon repeated self-pollination due to release of endogenous transposons-E. Richards-1999 FUNCTION: ATP-dependent DNA helicase that plays a role in formation, organization, stability and heritability of heterochromatin and thus regulates several physiological traits. Binds to the nucleosome and promotes chromatin remodeling in an ATP-dependent manner; induces nucleosome repositioning on a short DNA fragment, and, possibly, could be guided to target sites (including silent transposable elements) by small interfering RNAs (siRNAs). Can bind both free and nucleosomal DNA. Required for the heritable maintenance of genome integrity and transcriptional gene silencing (TGS), including homology-dependent gene silencing (HDG silencing), via the maintenance of DNA methylation (mostly on cytosine, in both CpG and CpHpG sites, where H is A, T or C) and of histone methylation (e.g. chromatin methylation). May facilitate localization of MBD proteins at specific nuclear domains. Necessary for the maintenance of the genomic imprint at the MEA locus, especially for the silencing of paternally inherited MEA locus. Plays a major role in the inactivation maintenance of retrotransposons (e.g. Tar17, SINE, LINE, ATLN39, CAC1 (CACTAs), Athila elements, and mutator-like elements MULEs and TIR-MULEs) and the silencing of repeated genes and transgenes (e.g. T-DNA insertions). Required for KYP-dependent histone H3 'Lys-9' (H3K9me) methylation, deacetylation of histone H4 'Lys-16' (H4K16) and MET1-dependent DNA methylation. Involved in the chromatin organization of 5S rRNA genes (localized in the pericentromeric heterochromatin of chromosomes 3, 4, and 5) modifications during heterochromatin establishment. Prevents siRNA accumulation (siRNA are probably involved in epigenetic inheritance and in 5S rRNA genes regulation by silencing). Required during plant organogenesis and development, as well as during seed formation. {ECO:0000269|PubMed:10319870, ECO:0000269|PubMed:10580004, ECO:0000269|PubMed:10715322, ECO:0000269|PubMed:10939915, ECO:0000269|PubMed:11148284, ECO:0000269|PubMed:11238379, ECO:0000269|PubMed:11346800, ECO:0000269|PubMed:11779837, ECO:0000269|PubMed:11948614, ECO:0000269|PubMed:12077425, ECO:0000269|PubMed:12194816, ECO:0000269|PubMed:12370435, ECO:0000269|PubMed:12403775, ECO:0000269|PubMed:12456661, ECO:0000269|PubMed:12472695, ECO:0000269|PubMed:12609046, ECO:0000269|PubMed:12663548, ECO:0000269|PubMed:14608503, ECO:0000269|PubMed:14630972, ECO:0000269|PubMed:14691539, ECO:0000269|PubMed:15269773, ECO:0000269|PubMed:15514067, ECO:0000269|PubMed:15516340, ECO:0000269|PubMed:15805479, ECO:0000269|PubMed:15968513, ECO:0000269|PubMed:17012404, ECO:0000269|PubMed:17082818, ECO:0000269|PubMed:17144899, ECO:0000269|PubMed:17339215, ECO:0000269|PubMed:17627280, ECO:0000269|PubMed:18467467, ECO:0000269|PubMed:19529764, ECO:0000269|PubMed:7870578, ECO:0000269|PubMed:8316832, ECO:0000269|PubMed:8901594, ECO:0000269|PubMed:9450349, ECO:0000269|PubMed:9611181, ECO:0000269|PubMed:9620857, ECO:0000269|PubMed:9927473}. 3.6.4.12 86638 ATP-dependent DNA helicase DDM1 (EC 3.6.4.12) (Protein CHROMATIN REMODELING 1) (AtCHR1) (CHR01) (Protein DECREASED DNA METHYLATION 1) (AtDDM1) (Protein SOMNIFEROUS 1) (SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1) nucleosome [GO:0000786]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; DNA mediated transformation [GO:0009294]; maintenance of chromatin silencing [GO:0006344]; methylation-dependent chromatin silencing [GO:0006346]; negative regulation of histone H4 acetylation [GO:0090241]; positive regulation of histone H3-K9 methylation [GO:0051574]; regulation of DNA methylation [GO:0044030]; regulation of gene expression by genetic imprinting [GO:0006349]; transcription, DNA-templated [GO:0006351]; transposition, RNA-mediated [GO:0032197] locus:2173644; AT5G66750 chromatin remodeling Chromatin remodeling factor DDM1a (Os09g0442700 protein),Os03g0722400 protein Q05KP6,A0A0P0W2Z7 Q05KP6_ORYSJ,A0A0P0W2Z7_ORYSJ OsDDM1a Os09g0442700 OsJ_29535 OSNPB_090442700,Os03g0722400 OSNPB_030722400 ENOG411DSMU HIPP26 Q9SZN7 HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 (AtHIP26) (AtHIPP26) (Farnesylated protein 6) (AtFP6) DISRUPTION PHENOTYPE: No visible phenotype. Inhibition of HB29-dependent induction of stress-related target genes. {ECO:0000269|PubMed:18974936, ECO:0000269|PubMed:21072340}. FUNCTION: Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport (PubMed:18823312). May be involved in cadmium transport and play a role in cadmium detoxification (PubMed:21072340). {ECO:0000269|PubMed:18823312, ECO:0000269|PubMed:21072340}. 17024 Heavy metal-associated isoprenylated plant protein 26 (AtHIP26) (AtHIPP26) (Farnesylated protein 6) (AtFP6) cytoplasm [GO:0005737]; nuclear membrane [GO:0031965]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; cadmium ion binding [GO:0046870]; copper ion binding [GO:0005507]; lead ion binding [GO:0032791]; cellular transition metal ion homeostasis [GO:0046916]; heat acclimation [GO:0010286]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Lower expression in siliques and leaves. Expressed in the vascular tissues. Detected in lateral roots, shoot apical meristem, petals of unopened flowers and weak expression in leaf vasculature. {ECO:0000269|PubMed:18823312, ECO:0000269|PubMed:18974936, ECO:0000269|PubMed:21072340}. locus:2121199; AT4G38580 Farnesylated protein OSJNBa0091C12.3 protein (Os04g0244800 protein) (cDNA clone:J023150J09, full insert sequence) Q7XWS9 Q7XWS9_ORYSJ Os04g0244800 OsJ_14023 OsJ_14025 OSJNBa0091C12.3 OSNPB_040244800 ENOG411DSMV WIP3 Q9SGD1 ZWIP3_ARATH Zinc finger protein WIP3 (WIP-domain protein 3) (AtWIP3) FUNCTION: Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. 38596 Zinc finger protein WIP3 (WIP-domain protein 3) (AtWIP3) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2200003; AT1G08290 protein TRANSPARENT TESTA 1-like NA NA NA NA NA NA NA ENOG411DSMW MIRO1,MIRO3 Q8RXF8,Q9MA88,A0A1I9LR36,A0A1I9LR35 MIRO1_ARATH,MIRO3_ARATH,A0A1I9LR36_ARATH,A0A1I9LR35_ARATH Mitochondrial Rho GTPase 1 (AtMIRO1) (EC 3.6.5.-) (Miro-related GTPase 1),Mitochondrial Rho GTPase 3 (AtMIRO3) (EC 3.6.5.-) (Miro-related GTPase 3),MIRO-related GTP-ase 3 DISRUPTION PHENOTYPE: Embryonic lethality between the apical 2-cell and the 4-terminal-cell embryo stage (PubMed:18344283, PubMed:20931334). Impaired in pollen germination and pollen tube growth (PubMed:18344283). {ECO:0000269|PubMed:18344283, ECO:0000269|PubMed:20931334}. Embryo defective; Gametophyte defective (inferred)-D. Meinke-2003 FUNCTION: Mitochondrial GTPase required to maintain proper development, morphology and intracellular distribution of mitochondria, which in turn are essential for the progress of embryonic cell division, development of haploid male and female gametes, and pollen tube growth. {ECO:0000269|PubMed:18344283, ECO:0000269|PubMed:20931334, ECO:0000269|PubMed:21494602}.,FUNCTION: Mitochondrial GTPase that may be involved in mitochondrion development. {ECO:0000250|UniProtKB:Q8RXF8}. R-ATH-194840;R-ATH-5689880; 3.6.5.- 72322,73067,56768,56924 Mitochondrial Rho GTPase 1 (AtMIRO1) (EC 3.6.5.-) (Miro-related GTPase 1),Mitochondrial Rho GTPase 3 (AtMIRO3) (EC 3.6.5.-) (Miro-related GTPase 3),MIRO-related GTP-ase 3 integral component of mitochondrial outer membrane [GO:0031307]; mitochondrion [GO:0005739]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; embryo development ending in seed dormancy [GO:0009793]; mitochondrion organization [GO:0007005]; pollen tube growth [GO:0009860]; small GTPase mediated signal transduction [GO:0007264],integral component of mitochondrial outer membrane [GO:0031307]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; mitochondrion organization [GO:0007005]; small GTPase mediated signal transduction [GO:0007264],intracellular [GO:0005622]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; small GTPase mediated signal transduction [GO:0007264],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; small GTPase mediated signal transduction [GO:0007264] DEVELOPMENTAL STAGE: Hihly expressed in both chalazal and peripheral endosperm during embryo development (from pre-globular to heart stage). {ECO:0000305|PubMed:21494602}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18344283}.,TISSUE SPECIFICITY: Expressed at very low levels in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18344283}. locus:2146385;,locus:2096224; AT5G27540,AT3G05310 Mitochondrial GTPase involved in mitochondrial trafficking (By similarity) Mitochondrial Rho GTPase (EC 3.6.5.-),Os03g0810700 protein,Os03g0810600 protein (Fragment) Q6ATR5,A0A0P0W5I4,A0A0N7KE18,A0A0P0W4W6,A0A0P0W4M9 Q6ATR5_ORYSJ,A0A0P0W5I4_ORYSJ,A0A0N7KE18_ORYSJ,A0A0P0W4W6_ORYSJ,A0A0P0W4M9_ORYSJ OSJNBa0028F23.7 LOC_Os03g59590 Os03g0810600 OSNPB_030810600,Os03g0810700 OSNPB_030810700,Os01g0843300 OSNPB_010843300,Os03g0810600 OSNPB_030810600 ENOG411E8T0 AGAMOUS-like 79 Q9C754 Q9C754_ARATH At1g30260/F12P21_9 (Galactosyltransferase family protein) (Uncharacterized protein F12P21.9) 10587 At1g30260/F12P21_9 (Galactosyltransferase family protein) (Uncharacterized protein F12P21.9) transferase activity, transferring glycosyl groups [GO:0016757]; response to cytokinin [GO:0009735] locus:2009782; AT1G30260 Has 16 Blast hits to 16 proteins in 5 species Archae - 0 NA NA NA NA NA NA NA ENOG411E0MS W8Q3I2,Q6E276,F4ISB4,F4ISB3 W8Q3I2_ARATH,Q6E276_ARATH,F4ISB4_ARATH,F4ISB3_ARATH Glycosyltransferase (O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein) (Fragment),O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein,Glycosyltransferase (Glycosyltransferase family 61 protein),Glycosyltransferase family 61 protein 51323,51124,51594,51221 Glycosyltransferase (O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein) (Fragment),O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein,Glycosyltransferase (Glycosyltransferase family 61 protein),Glycosyltransferase family 61 protein transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2063793;,locus:2063809; AT2G03370,AT2G03360 Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411DQGT PMRT15 Q8GWT4 ANM15_ARATH Protein arginine N-methyltransferase 1.5 (AtPMRT15) (AtPMRT5) (EC 2.1.1.319) (Shk1 kinase-binding protein 1 homolog) DISRUPTION PHENOTYPE: Plants are late-flowering. Increased alternative splicing of several genes, including APRR9. {ECO:0000269|PubMed:17363895, ECO:0000269|PubMed:20962777}. Late flowering under long-day photoperiod. Increased number of rosette leaves. Severe developmental retardation 14 days after germination. Slightly reduced fertility. Leaves slightly more curled and darker than wild-type plants.,Late flowering under long-day photoperiod.,vernalization insensitive failed to flower rapidly after a vernalization treatment; delayed flowering without a vernalization treatment; darker green leaves with shorter petioles; compact rosette; wider and slightly downward curling leaves Increased rosette leaf number; Curled, slightly darker green leaves; Slow growth; Late flowering-K. Chong-2007 FUNCTION: Methylates arginine residues of myelin basic protein (MBP) in vitro. Methylates symmetrically histone H4 of the FLC chromatin to form H4R3me2s, which in turn suppresses FLC expression to induce flowering. Regulates alternative splicing by methylating spliceosomal proteins. Involved in the post-transcriptional regulation of the circadian clock. {ECO:0000269|PubMed:17363895, ECO:0000269|PubMed:20962777}. 2.1.1.125; 2.1.1.319 71870 Protein arginine N-methyltransferase 1.5 (AtPMRT15) (AtPMRT5) (EC 2.1.1.319) (Shk1 kinase-binding protein 1 homolog) cytosol [GO:0005829]; nucleus [GO:0005634]; histone-arginine N-methyltransferase activity [GO:0008469]; protein methyltransferase activity [GO:0008276]; peptidyl-arginine methylation, to symmetrical-dimethyl arginine [GO:0019918]; positive regulation of vernalization response [GO:0010220]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: High levels from 5 to 20 days after germination (at protein level). {ECO:0000269|PubMed:17363895}. TISSUE SPECIFICITY: Highly expressed in flowers, roots and siliques, lower expression in stems and mature leaves (at protein level). Abundant in shoot apex, young leaves and leaf primordia, floral and inflorescence meristems, gynoecium, stamens, sepals and young siliques, but not in older leaves, petals and vascular tissues. {ECO:0000269|PubMed:17363895}. locus:2126276; AT4G31120 Protein arginine n-methyltransferase Protein arginine N-methyltransferase 5 (EC 2.1.1.320) (Shk1 kinase-binding protein 1 homolog) Q6YXZ7 ANM5_ORYSJ PRMT5 SKB1 Os02g0139200 LOC_Os02g04660 OJ1679_B08.2 OsJ_005168 OSJNBa0026E05.36 FUNCTION: Methylates arginine residues in proteins such as histone H4. {ECO:0000250}. ENOG411DQG7 SDH5 Q9SX77 SDH5_ARATH Succinate dehydrogenase subunit 5, mitochondrial PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle. {ECO:0000305}. ARA:AT1G47420-MONOMER;MetaCyc:AT1G47420-MONOMER; 28106 Succinate dehydrogenase subunit 5, mitochondrial mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; respiratory chain complex II [GO:0045273]; response to cytokinin [GO:0009735]; tricarboxylic acid cycle [GO:0006099] locus:2015428; AT1G47420 NA Succinate dehydrogenase subunit 5, mitochondrial Q0JDA2 SDH5_ORYSJ SDH5 Os04g0418000 LOC_Os04g34100 OsJ_14772 OSJNBa0033G16.15 OSJNBb0108J11.2 ENOG411EJ8E Q9C9G9,A0A1P8ANX4,A0A1P8ANY6 Q9C9G9_ARATH,A0A1P8ANX4_ARATH,A0A1P8ANY6_ARATH At1g68340/T22E19_3 (Uncharacterized protein T22E19.3),Uncharacterized protein 28141,28153,27126 At1g68340/T22E19_3 (Uncharacterized protein T22E19.3),Uncharacterized protein locus:2199337; AT1G68340 Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411EJ8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ8F ERF015 Q6NLD5 ERF15_ARATH Ethylene-responsive transcription factor ERF015 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 20811 Ethylene-responsive transcription factor ERF015 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2126619; AT4G31060 AP2 NA NA NA NA NA NA NA ENOG411EJ8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EJ8C SMR14 Q9LTJ2 SMR14_ARATH Cyclin-dependent protein kinase inhibitor SMR14 (Cyclin-dependent protein kinase inhibitor SMR13) (Protein SIAMESE-RELATED 13) (Protein SIAMESE-RELATED 14) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250|UniProtKB:Q9LZ78}. 18003 Cyclin-dependent protein kinase inhibitor SMR14 (Cyclin-dependent protein kinase inhibitor SMR13) (Protein SIAMESE-RELATED 13) (Protein SIAMESE-RELATED 14) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:2148288; AT5G59360 NA NA NA NA NA NA NA NA ENOG411EJ8B F4J496 F4J496_ARATH Cysteine proteinases superfamily protein 24003 Cysteine proteinases superfamily protein chloroplast [GO:0009507] locus:2101620; AT3G44780 NA NA NA NA NA NA NA NA ENOG411EJ8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: solute carrier family 10 (sodium bile acid cotransporter family) member 7 NA NA NA NA NA NA NA ENOG411EJ8N MTI20.2 Q6ID95,A0A1P8BAP7,A0A1P8BAP2,F4KC44 Q6ID95_ARATH,A0A1P8BAP7_ARATH,A0A1P8BAP2_ARATH,F4KC44_ARATH At5g57790,Uncharacterized protein 21458,15338,23042,24464 At5g57790,Uncharacterized protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; megagametogenesis [GO:0009561]; microsporogenesis [GO:0009556] locus:2174358; AT5G57790 NA NA NA NA NA NA NA NA ENOG411EJ8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: replication protein NA NA NA NA NA NA NA ENOG411EJ8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os06g0562066 protein A0A0P0WY36 A0A0P0WY36_ORYSJ Os06g0562066 OSNPB_060562066 ENOG411EJ8W IDL5 Q6DUW8 IDL5_ARATH Protein IDA-LIKE 5 FUNCTION: May be involved in floral abscission. {ECO:0000269|PubMed:18660431}. MISCELLANEOUS: IDL5 is only partially redundant with IDA. 13060 Protein IDA-LIKE 5 extracellular space [GO:0005615]; floral organ abscission [GO:0010227] TISSUE SPECIFICITY: Expressed mainly in flowers. Lower levels in buds and seedlings. Detected in vascular tissues and in hydathodes. {ECO:0000269|PubMed:12972671, ECO:0000269|PubMed:18660431}. locus:4010713599; AT1G76952 (inflorescence deficient in abscission (ida)-like 5) NA NA NA NA NA NA NA ENOG411EJ8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain Os04g0639700 protein (Fragment),Os04g0639800 protein (Fragment) A0A0P0WFC2,A0A0P0WFK8 A0A0P0WFC2_ORYSJ,A0A0P0WFK8_ORYSJ Os04g0639700 OSNPB_040639700,Os04g0639800 OSNPB_040639800 ENOG411EJ8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EJ8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411EJ8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPP transferase NA NA NA NA NA NA NA ENOG411EJ8X Q84W13 Q84W13_ARATH At1g49310 (Transmembrane protein) (Uncharacterized protein At1g49310) 9730 At1g49310 (Transmembrane protein) (Uncharacterized protein At1g49310) integral component of membrane [GO:0016021] locus:2010162; AT1G49310 Protein of unknown function (DUF2775) NA NA NA NA NA NA NA ENOG411EJ8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_8 NA NA NA NA NA NA NA ENOG411EJ85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: NADH dehydrogenase (Ubiquinone) Fe-S protein 2 49kDa (NADH-coenzyme Q reductase) NA NA NA NA NA NA NA ENOG411EJ84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ87 W8PV66,A0A1P8B780,F4JJG0 W8PV66_ARATH,A0A1P8B780_ARATH,F4JJG0_ARATH Glucosyltransferase-like protein (Glycosyltransferase) (Fragment),Glucosyltransferase-like protein 34432,25374,26359 Glucosyltransferase-like protein (Glycosyltransferase) (Fragment),Glucosyltransferase-like protein transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2129890; AT4G15270 NA NA NA NA NA NA NA NA ENOG411EJ86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH NA NA NA NA NA NA NA ENOG411EJ81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0511800 protein (Fragment) A0A0N7KFC9 A0A0N7KFC9_ORYSJ Os02g0511800 OSNPB_020511800 ENOG411EJ80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tripeptidyl peptidase ii NA NA NA NA NA NA NA ENOG411EJ83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os11g0427401 protein (Fragment) A0A0P0Y1X5 A0A0P0Y1X5_ORYSJ Os11g0427401 OSNPB_110427401 ENOG411EJ89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDFB MFB16.2 Q9LUF8 Q9LUF8_ARATH Major facilitator superfamily protein (Nodulin-like protein) (Putative nodulin protein) 58848 Major facilitator superfamily protein (Nodulin-like protein) (Putative nodulin protein) integral component of membrane [GO:0016021] locus:2159752;locus:2832385; AT5G50520AT5G50630; Nodulin-like NA NA NA NA NA NA NA ENOG411EDHX Q9FZF3,Q9SS35,Q9LNF6,Q9C6J3,Q9SXA0,Q9FZF8,Q9C6J2 FB43_ARATH,FB137_ARATH,FB48_ARATH,FB52_ARATH,FB42_ARATH,FB44_ARATH,FB53_ARATH Putative F-box protein At1g47765,Putative F-box protein At3g10240,F-box protein At1g48060,Putative F-box protein At1g50870,Putative F-box protein At1g47730,Putative F-box protein At1g47790,Putative F-box protein At1g50880 44986,45402,42266,46448,45899,45749,31871 Putative F-box protein At1g47765,Putative F-box protein At3g10240,F-box protein At1g48060,Putative F-box protein At1g50870,Putative F-box protein At1g47730,Putative F-box protein At1g47790,Putative F-box protein At1g50880 locus:2826820;,locus:2076309;,locus:2036381;,locus:2202440;,locus:2202425;,locus:2036391; AT1G47765,AT3G10240,AT1G48060,AT1G50870,AT1G47730,AT1G47790,AT1G50880 F-box associated domain NA NA NA NA NA NA NA ENOG411EDKJ Q8GXK5,Q9M0Z9,A0A1P8B6H7,A0A1P8B3V9,A0A1P8B3U9 EDL14_ARATH,EDL15_ARATH,A0A1P8B6H7_ARATH,A0A1P8B3V9_ARATH,A0A1P8B3U9_ARATH Sugar transporter ERD6-like 14,Sugar transporter ERD6-like 15,Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 51677,51411,56898,45466,51274 Sugar transporter ERD6-like 14,Sugar transporter ERD6-like 15,Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2138927; AT4G04750,AT4G04760 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EDKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EDKH MAPKKK19,F11C1_150 Q9FHA5,Q9SND6 Q9FHA5_ARATH,Q9SND6_ARATH Mitogen-activated protein kinase kinase kinase 19 (Protein kinase-like protein),Mitogen-activated protein kinase kinase kinase 20 (Protein kinase-like protein) 37921,37553 Mitogen-activated protein kinase kinase kinase 19 (Protein kinase-like protein),Mitogen-activated protein kinase kinase kinase 20 (Protein kinase-like protein) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; pollen sperm cell differentiation [GO:0048235]; protein phosphorylation [GO:0006468]; regulation of mitotic cell cycle [GO:0007346]; response to cold [GO:0009409]; response to reactive oxygen species [GO:0000302]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2155568;,locus:2074835; AT5G67080,AT3G50310 STYKc NA NA NA NA NA NA NA ENOG411EDKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EDKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: transposon protein NA NA NA NA NA NA NA ENOG411EDKX F4HX16 F4HX16_ARATH Protein kinase superfamily protein R-ATH-446652; 43512 Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2036818; AT1G61860 STYKc NA NA NA NA NA NA NA ENOG411EDKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EDKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MIF4G NA NA NA NA NA NA NA ENOG411EDKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinesterase NA NA NA NA NA NA NA ENOG411EDKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein (Os03g0367400 protein),Os03g0367300 protein,Os03g0367600 protein,Os03g0367700 protein Q10KW8,A0A0P0VYL6,A0A0N7KHB3,A0A0P0VXW3 Q10KW8_ORYSJ,A0A0P0VYL6_ORYSJ,A0A0N7KHB3_ORYSJ,A0A0P0VXW3_ORYSJ Os03g0367400 LOC_Os03g25220 OSNPB_030367400,Os03g0367300 OSNPB_030367300,Os03g0367600 OSNPB_030367600,Os03g0367700 OSNPB_030367700 ENOG411EDKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDK8 WRKY59 Q9SJ09 WRK59_ARATH Probable WRKY transcription factor 59 (WRKY DNA-binding protein 59) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 23254 Probable WRKY transcription factor 59 (WRKY DNA-binding protein 59) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2052506; AT2G21900 Transcription factor NA NA NA NA NA NA NA ENOG411EDK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uso1 / p115 like vesicle tethering protein C terminal region NA NA NA NA NA NA NA ENOG411EDK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDK4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NMT1/THI5 like NA NA NA NA NA NA NA ENOG411EDK2 T20K12.190 Q9M2D5,Q5Q0C1,F4IH52,B3H4G0 Q9M2D5_ARATH,Q5Q0C1_ARATH,F4IH52_ARATH,B3H4G0_ARATH Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein T20K12.190),Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein At3g61280),Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)),O-glucosyltransferase rumi-like protein (DUF821) 53710,63158,61510,44729 Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein T20K12.190),Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)) (Uncharacterized protein At3g61280),Glycosyltransferase (O-glucosyltransferase rumi-like protein (DUF821)),O-glucosyltransferase rumi-like protein (DUF821) endomembrane system [GO:0012505]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; glucosyltransferase activity [GO:0046527]; glycolipid metabolic process [GO:0006664],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2098956;,locus:2098946;,locus:2050664; AT3G61290,AT3G61280,AT2G45840 CAP10 NA NA NA NA NA NA NA ENOG411EDK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411EDK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M41 NA NA NA NA NA NA NA ENOG411EDK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411E74D Q8L9R6 Q8L9R6_ARATH At1g68680 (SH3/FCH domain protein) 8351 At1g68680 (SH3/FCH domain protein) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747] locus:2026930; AT1G68680 NA Os05g0176600 protein Q6AT23 Q6AT23_ORYSJ Os05g0176600 Os05g0176600 OsJ_17314 OSJNBa0029B02.6 OSNPB_050176600 ENOG411E74E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0243800 protein Q6Z0U1 Q6Z0U1_ORYSJ Os08g0243800 OSJNBb0070J06.29 OSNPB_080243800 P0437G01.14 ENOG411E74F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0487200 protein A0A0P0XW03 A0A0P0XW03_ORYSJ Os10g0487200 OSNPB_100487200 ENOG411E74G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Os02g0124100 protein,Os02g0124300 protein Q6Z710,Q6Z708 Q6Z710_ORYSJ,Q6Z708_ORYSJ Os02g0124100 OsJ_05193 OSNPB_020124100 P0575F10.24,Os02g0124300 OsJ_05195 OSNPB_020124300 P0575F10.27 ENOG411E74A Q944S8,A8MSE0 Q944S8_ARATH,A8MSE0_ARATH At4g21108/At4g21108 (Cytochrome-c oxidase/ electron carrier) (Uncharacterized protein At4g21105/F7J7.1),Cytochrome-c oxidase/ electron carrier 7684,5705 At4g21108/At4g21108 (Cytochrome-c oxidase/ electron carrier) (Uncharacterized protein At4g21105/F7J7.1),Cytochrome-c oxidase/ electron carrier integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774] locus:505006502; AT4G21105 Cytochrome c oxidase subunit VIIa Os05g0457000 protein A0A0P0WNA2 A0A0P0WNA2_ORYSJ Os05g0457000 OSNPB_050457000 ENOG411E74B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0703300 protein (Zinc finger, C3HC4 type (RING finger), putative) (Zinc finger, C3HC4 type family protein, expressed) Q53NN4 Q53NN4_ORYSJ Os11g0703300 LOC_Os11g47700 OSNPB_110703300 ENOG411E74C Q6NL17 Q6NL17_ARATH At1g15800 22299 At1g15800 locus:2036179; AT1G15800 NA NA NA NA NA NA NA NA ENOG411E74N Q1G3G5 Q1G3G5_ARATH Ribosomal protein L31 8955 Ribosomal protein L31 ribosome [GO:0005840] locus:4515103733; AT5G55125 Ribosomal protein L31 Os11g0516100 protein (Fragment) A0A0P0Y2M5 A0A0P0Y2M5_ORYSJ Os11g0516100 OSNPB_110516100 ENOG411E74I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase NA NA NA NA NA NA NA ENOG411E74J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os07g0175500 protein (Fragment) A0A0P0X2S1 A0A0P0X2S1_ORYSJ Os07g0175500 OSNPB_070175500 ENOG411E74K F18L15.150 Q9SN96 Q9SN96_ARATH AT3g46430/F18L15_150 (ATP synthase) (Uncharacterized protein At3g46430/F18L15_150) (Uncharacterized protein F18L15.150) (Uncharacterized protein MTH12.17) 6585 AT3g46430/F18L15_150 (ATP synthase) (Uncharacterized protein At3g46430/F18L15_150) (Uncharacterized protein F18L15.150) (Uncharacterized protein MTH12.17) mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739] locus:2078201;locus:504954866; AT3G46430AT5G59613; NA Os03g0606200 protein Q0DQD8 Q0DQD8_ORYSJ Os03g0606200 Os03g0606200 OsJ_11685 OSNPB_030606200 ENOG411E74T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF822) NA NA NA NA NA NA NA ENOG411E74U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0155200 protein) Q7G6D8 Q7G6D8_ORYSJ Os10g0155200 LOC_Os10g06690 OSJNAa0034B05.11 OSJNBa0004E08.7 OSNPB_100155200 ENOG411E74W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E74P PDF2.1,LCR73,LCR76,PDF2.3,PDF2.4,PDF2.2,LCR71,PDF2.6 Q41914,P82782,P82785,Q9ZUL7,Q9C947,Q39182,P82781,Q9ZUL8 DEF04_ARATH,DEF08_ARATH,DEF09_ARATH,DEF01_ARATH,DEF05_ARATH,DEF02_ARATH,DEF03_ARATH,DEF10_ARATH Defensin-like protein 4 (Low-molecular-weight cysteine-rich protein 70) (Protein LCR70) (Plant defensin 2.1),Defensin-like protein 8 (Low-molecular-weight cysteine-rich protein 73) (Protein LCR73),Putative defensin-like protein 9 (Putative low-molecular-weight cysteine-rich protein 76) (Protein LCR76),Defensin-like protein 1 (Low-molecular-weight cysteine-rich protein 68) (Protein LCR68) (Plant defensin 2.3),Defensin-like protein 5 (Low-molecular-weight cysteine-rich protein 66) (Protein LCR66) (Plant defensin 2.4),Defensin-like protein 2 (Low-molecular-weight cysteine-rich protein 69) (Protein LCR69) (Plant defensin 2.2),Putative defensin-like protein 3 (Putative low-molecular-weight cysteine-rich protein 71) (Protein LCR71),Defensin-like protein 10 (Low-molecular-weight cysteine-rich protein 72) (Protein LCR72) (Plant defensin 2.6) FUNCTION: Confers broad-spectrum resistance to pathogens. 8578,8986,9683,8544,8290,8524,6871,7718 Defensin-like protein 4 (Low-molecular-weight cysteine-rich protein 70) (Protein LCR70) (Plant defensin 2.1),Defensin-like protein 8 (Low-molecular-weight cysteine-rich protein 73) (Protein LCR73),Putative defensin-like protein 9 (Putative low-molecular-weight cysteine-rich protein 76) (Protein LCR76),Defensin-like protein 1 (Low-molecular-weight cysteine-rich protein 68) (Protein LCR68) (Plant defensin 2.3),Defensin-like protein 5 (Low-molecular-weight cysteine-rich protein 66) (Protein LCR66) (Plant defensin 2.4),Defensin-like protein 2 (Low-molecular-weight cysteine-rich protein 69) (Protein LCR69) (Plant defensin 2.2),Putative defensin-like protein 3 (Putative low-molecular-weight cysteine-rich protein 71) (Protein LCR71),Defensin-like protein 10 (Low-molecular-weight cysteine-rich protein 72) (Protein LCR72) (Plant defensin 2.6) extracellular region [GO:0005576]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] TISSUE SPECIFICITY: Expressed in roots, siliques and seeds. {ECO:0000269|Ref.6}.,TISSUE SPECIFICITY: Expressed in the whole plant except roots. {ECO:0000269|PubMed:9001391}.,TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:11437247, ECO:0000269|Ref.7}. locus:2051648;,locus:1009023182;,locus:1009023165;,locus:2051638;,locus:2206056;,locus:2051668;,locus:2051703; AT2G02120,AT2G02147,AT2G31953,AT2G02130,AT1G61070,AT2G02100,AT2G02135,AT2G02140 defensin-like protein Os02g0212100 protein,Gamma-thionin PPT, putative, expressed (Os03g0130300 protein) (cDNA clone:J023019E10, full insert sequence) Q6H836,Q7F8K7 Q6H836_ORYSJ,Q7F8K7_ORYSJ Os02g0212100 OJ1267_F10.15 OsJ_05867 OSNPB_020212100,Os03g0130300 LOC_Os03g03810 Os03g0130300 OsJ_09283 OSNPB_030130300 ENOG411E74Q Q9FE70,Q941D7 RC21_ARATH,Q941D7_ARATH UPF0057 membrane protein At1g57550,At2g38901/At2g38901 (Expressed protein) (Low temperature and salt responsive protein family) 5842,5947 UPF0057 membrane protein At1g57550,At2g38901/At2g38901 (Expressed protein) (Low temperature and salt responsive protein family) integral component of membrane [GO:0016021] locus:2027518;,locus:505006307; AT1G57550,AT2G38905 low temperature and salt responsive protein Os03g0286900 protein (Putative low-temperature induced protein) (cDNA clone:J023071K01, full insert sequence),Os05g0122700 protein (cDNA, clone: J065188N05, full insert sequence) Q8H001,Q75L88 Q8H001_ORYSJ,Q75L88_ORYSJ Os03g0286900 LOC_Os03g17790 Os03g0286900 OsJ_10421 OsJ_10422 OSJNBa0013D02.1 OSNPB_030286900,Os05g0122700 Os05g0122700 OJ1729_E02.6 OsJ_16942 OSNPB_050122700 ENOG411E74S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Calcium-Binding Protein NA NA NA NA NA NA NA ENOG411E74X Q9LRR8 Q9LRR8_ARATH At3g14430 (GRIP/coiled-coil protein) (Uncharacterized protein At3g14430) 9045 At3g14430 (GRIP/coiled-coil protein) (Uncharacterized protein At3g14430) integral component of membrane [GO:0016021]; response to oxidative stress [GO:0006979] locus:2091647; AT3G14430 NA Os08g0528601 protein B9G1X2 B9G1X2_ORYSJ Os08g0528601 OsJ_28032 OSNPB_080528601 ENOG411E74Y F4I924,A0A1P8AVT6,Q8L6Z0,F4IL92 F4I924_ARATH,A0A1P8AVT6_ARATH,Q8L6Z0_ARATH,F4IL92_ARATH Transmembrane protein,Transmembrane protein (Uncharacterized protein At1g17780),Mucin 30051,25185,21554,19749 Transmembrane protein,Transmembrane protein (Uncharacterized protein At1g17780),Mucin integral component of membrane [GO:0016021] locus:2030978;,locus:504956054; AT1G17780,AT2G16575 NA NA NA NA NA NA NA NA ENOG411E744 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CP12 NA NA NA NA NA NA NA ENOG411E745 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E746 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET domain NA NA NA NA NA NA NA ENOG411E747 SAMBA Q9C613 SAMBA_ARATH Protein SAMBA DISRUPTION PHENOTYPE: Growth-related phenotypes, such as formation of large roots, leaves and seeds, enlarged meristem size, and reduced fertility due to defect in male gametogenesis. {ECO:0000269|PubMed:22869741}. FUNCTION: Plays an important role in organ size control. Acts as negative regulator of the anaphase-promoting complex/cyclosome (APC/C). Regulates cell proliferation during early development by targeting CYCA2-3 for APC/C-mediated degradation. Required for mitosis I during pollen microspore development. {ECO:0000269|PubMed:22869741}. 10856 Protein SAMBA anaphase-promoting complex binding [GO:0010997]; microsporogenesis [GO:0009556]; negative regulation of organ growth [GO:0046621]; pollen development [GO:0009555]; positive regulation of protein catabolic process [GO:0045732] TISSUE SPECIFICITY: Expressed in embryos, germinating seeds, hypocotyls and pollen grains. {ECO:0000269|PubMed:22869741}. locus:2028296; AT1G32310 NA Os10g0575950 protein B9G761 B9G761_ORYSJ Os10g0575950 OsJ_32573 OSJNBa0027L23.12 OSNPB_100575950 ENOG411E740 Q9C618 Q9C618_ARATH 50S ribosomal-like protein (At1g66890) (Uncharacterized protein T4O24.4) 17717 50S ribosomal-like protein (At1g66890) (Uncharacterized protein T4O24.4) locus:2204460; AT1G66890 NA NA NA NA NA NA NA NA ENOG411E741 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1675) NA NA NA NA NA NA NA ENOG411E742 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytosulfokine precursor protein (PSK) Phytosulfokines 5 (Secretory protein SH27A) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] O81277 PSK5_ORYSJ PSK5 Os12g0147800 LOC_Os12g05260 OsJ_35219 FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. ENOG411E748 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0118800 protein Q5VPR5 Q5VPR5_ORYSJ Os06g0118800 Os06g0118800 OsJ_19917 OSJNBa0062J13.32 OSNPB_060118800 P0660D08.1 ENOG411E749 MNB8.9 Q9LVU9,Q5S4T5,Q3E8C2 Q9LVU9_ARATH,Q5S4T5_ARATH,Q3E8C2_ARATH Uncharacterized protein At5g53030,Uncharacterized protein 27544,21885,25058 Uncharacterized protein At5g53030,Uncharacterized protein locus:2168407;,locus:2137350; AT5G53030,AT4G27810 NA NA NA NA NA NA NA NA ENOG411DR82 ACER Q94IB9 ACER_ARATH Alkaline ceramidase (AlkCDase) (Alkaline CDase) (AtACER) (EC 3.5.1.-) (Acyl-CoA independent ceramide synthase 1) (AtCES1) (Alkaline ceramidase YPC1) (AtYPC1) (Alkaline dihydroceramidase ACER) (Alkaline phytoceramidase) (aPHC) DISRUPTION PHENOTYPE: Pleiotropic phenotypes, including reduction of leaf size, dwarfing, small flowers and an irregular wax layer. The abnormal wax layer is associated with higher water loss and rapid chlorophyll leaching due to an increased cuticle permeability. Increased phytoceramides levels and decreased long chain bases. Increased sensitivity to salt stress. Increased susceptibility to the pathogenic bacteria P.syringae with reduced pathogenesis-related (PR) genes induction. Reduced sensitivity to abscisic acid (ABA) leading to impaired stomatal closure regulation. Increased sensitivity to the fungal toxin fumonisin B1 (FB1)-induced cell death. {ECO:0000269|PubMed:25619405}. FUNCTION: Hydrolyzes only phytoceramide into phytosphingosine and free fatty acid (PubMed:25619405). Does not have reverse activity (By similarity). Affects plant morphogenesis. Required for the formation of wax layer that ensure cuticle permeability. Implicated in abscisic acid (ABA)-mediated stomatal closure. Involved in both biotic and abiotic stresses. Promotes salt resistance and defenses responses toward pathogenic bacteria (e.g. P.syringae) and against the fungal toxin fumonisin B1 (FB1) (PubMed:25619405). {ECO:0000250|UniProtKB:Q9NUN7, ECO:0000269|PubMed:25619405}. R-ATH-1660661; 3.5.1.- 29744 Alkaline ceramidase (AlkCDase) (Alkaline CDase) (AtACER) (EC 3.5.1.-) (Acyl-CoA independent ceramide synthase 1) (AtCES1) (Alkaline ceramidase YPC1) (AtYPC1) (Alkaline dihydroceramidase ACER) (Alkaline phytoceramidase) (aPHC) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [GO:0016811]; abscisic acid-activated signaling pathway [GO:0009738]; ceramide metabolic process [GO:0006672]; defense response to bacterium [GO:0042742]; defense response, incompatible interaction [GO:0009814]; multicellular organism development [GO:0007275]; regulation of stomatal closure [GO:0090333]; response to abscisic acid [GO:0009737]; response to molecule of fungal origin [GO:0002238]; response to salt stress [GO:0009651]; sphingolipid biosynthetic process [GO:0030148]; water homeostasis [GO:0030104]; wax biosynthetic process [GO:0010025] TISSUE SPECIFICITY: Mostly expressed in roots, shoot meristems and pollen, and, to a lower extent, in mature leaves. {ECO:0000269|PubMed:25619405}. locus:2132110; AT4G22330 Alkaline ceramidase Alkaline phytoceramidase family protein, expressed (Os03g0698900 protein) (Putative Acyl-CoA independent ceramide synthase) (cDNA clone:001-014-G02, full insert sequence) (cDNA clone:J033024P22, full insert sequence) Q84LH5 Q84LH5_ORYSJ LOC_Os03g49180 Os03g0698900 OsJ_12222 OSJNBb0017F17.18 OSNPB_030698900 ENOG411DR83 Q9C5H4 Y3627_ARATH VHS domain-containing protein At3g16270 74892 VHS domain-containing protein At3g16270 intracellular [GO:0005622]; membrane [GO:0016020]; intracellular protein transport [GO:0006886] locus:2094887; AT3G16270 VHS domain-containing protein Os01g0232400 protein (Putative VHS1 protein) (cDNA clone:J033079D23, full insert sequence) Q5NB64 Q5NB64_ORYSJ Os01g0232400 OSNPB_010232400 P0431F01.34 ENOG411DR81 PIRL4 Q9SVW8,A0A1P8B8I3 PIRL4_ARATH,A0A1P8B8I3_ARATH Plant intracellular Ras-group-related LRR protein 4,Plant intracellular ras group-related LRR 4 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. 60995,59882 Plant intracellular Ras-group-related LRR protein 4,Plant intracellular ras group-related LRR 4 plasma membrane [GO:0005886]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:15809230}. locus:2117617; AT4G35470 Leucine-rich repeat-containing protein Plant intracellular Ras-group-related LRR protein 4 (Intracellular Ras-group-related LRR protein 4) (OsIRL4),Os08g0511700 protein Q6Z8P4,A0A0P0XIR6 PIRL4_ORYSJ,A0A0P0XIR6_ORYSJ IRL4 Os08g0511700 LOC_Os08g40090 P0711H09.3,Os08g0511700 OSNPB_080511700 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. ENOG411DR86 CYP94D1,T5P19_280 Q9LNL3,Q9LXX7 Q9LNL3_ARATH,Q9LXX7_ARATH Cytochrome P450 family protein (Cytochrome P450, family 94, subfamily D, polypeptide 1) (F12K21.15),Cytochrome P450, family 94, subfamily D, polypeptide 2 (Cytochrome P450-like protein) ARA:AT1G34540-MONOMER;,ARA:AT3G56630-MONOMER; 56825,57127 Cytochrome P450 family protein (Cytochrome P450, family 94, subfamily D, polypeptide 1) (F12K21.15),Cytochrome P450, family 94, subfamily D, polypeptide 2 (Cytochrome P450-like protein) heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2009278;,locus:2102639; AT1G34540,AT3G56630 cytochrome P450 Os01g0804400 protein (Putative cytochrome P450-dependent fatty acid hydroxylase),Os01g0803900 protein (cDNA, clone: J100035A04, full insert sequence),Cytochrome P450-dependent fatty acid hydroxylase-like protein (Os01g0804900 protein),Os12g0134900 protein Q8LRA0,B7FA24,Q5VQX4,B9GDX0 Q8LRA0_ORYSJ,B7FA24_ORYSJ,Q5VQX4_ORYSJ,B9GDX0_ORYSJ Os01g0804400 Os01g0804400 OsJ_03792 OSNPB_010804400 P0034E02.42,Os01g0803900 Os01g0803900 OSNPB_010803900,Os01g0804900 Os01g0804900 OSNPB_010804900 P0034E02.51,Os12g0134900 OsJ_36621 OSNPB_120134900 ENOG411DR87 AEE21,AAE1 Q9SFW5,F4HUK6,A8MRP8 AEE21_ARATH,AAE1_ARATH,A8MRP8_ARATH Probable acyl-activating enzyme 21 (EC 6.2.1.-),Probable acyl-activating enzyme 1, peroxisomal (EC 6.2.1.-) (AMP-binding protein 1) (AtAMPBP1),Acyl activating enzyme 1 FUNCTION: May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. {ECO:0000250}. ARA:AT1G76290-MONOMER; 6.2.1.- 60494,61073,52604 Probable acyl-activating enzyme 21 (EC 6.2.1.-),Probable acyl-activating enzyme 1, peroxisomal (EC 6.2.1.-) (AMP-binding protein 1) (AtAMPBP1),Acyl activating enzyme 1 ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631],peroxisome [GO:0005777]; ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631],catalytic activity [GO:0003824]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and developing seeds. {ECO:0000269|PubMed:12805634}. locus:2014599;,locus:2030407; AT1G76290,AT1G20560 AMP-binding enzyme AMP-dependent synthetase and ligase family protein, putative, expressed (Os03g0133500 protein) (cDNA clone:J013060C21, full insert sequence),Os03g0133800 protein Q10S60,A0A0N7KGJ1 Q10S60_ORYSJ,A0A0N7KGJ1_ORYSJ Os03g0133500 LOC_Os03g04120 Os03g0133500 OSNPB_030133500,Os03g0133800 OSNPB_030133800 ENOG411DR84 ERF1-2,ERF1-3 Q9LPV8,P35614 ERF1Y_ARATH,ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-2 (Eukaryotic release factor 1-2) (eRF1-2) (Omnipotent suppressor protein 1 homolog 2) (SUP1 homolog 2),Eukaryotic peptide chain release factor subunit 1-3 (Eukaryotic release factor 1-3) (eRF1-3) (Omnipotent suppressor protein 1 homolog 3) (SUP1 homolog 3) Resistant to paclobutrazol (inhibitor of GA synthesis)-L. Li-2009 FUNCTION: Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (PubMed:15474304). Modulates plant growth and development (PubMed:16113224). {ECO:0000269|PubMed:16113224, ECO:0000303|PubMed:15474304}. R-ATH-72764;R-ATH-975956;R-ATH-975957; 48941,49007 Eukaryotic peptide chain release factor subunit 1-2 (Eukaryotic release factor 1-2) (eRF1-2) (Omnipotent suppressor protein 1 homolog 2) (SUP1 homolog 2),Eukaryotic peptide chain release factor subunit 1-3 (Eukaryotic release factor 1-3) (eRF1-3) (Omnipotent suppressor protein 1 homolog 3) (SUP1 homolog 3) cytosol [GO:0005829]; plasma membrane [GO:0005886]; translation release factor activity [GO:0003747]; regulation of growth [GO:0040008]; translational termination [GO:0006415],cytoplasm [GO:0005737]; translation release factor activity [GO:0003747]; regulation of growth [GO:0040008]; translational termination [GO:0006415] locus:2010341;,locus:2088857; AT1G12920,AT3G26618 Eukaryotic peptide chain release factor subunit Eukaryotic peptide chain release factor subunit 1-2, putative, expressed (Eukaryotic peptide chain release factor subunit 1-3 (ERF1-3)) (Os03g0702800 protein) (Putative peptide chain release factor subunit 1 protein) (cDNA clone:J033103O08, full insert sequence),Os07g0587400 protein (Putative eukaryotic peptide chain release factor subunit 1-3 (ERF1-3)) (cDNA clone:J033138K20, full insert sequence),Os07g0587400 protein (Fragment) Q75I90,Q6ZIQ1,A0A0P0X8P7 Q75I90_ORYSJ,Q6ZIQ1_ORYSJ,A0A0P0X8P7_ORYSJ OSJNBa0004L11.18 LOC_Os03g49580 Os03g0702800 OsJ_12260 OSNPB_030702800,Os07g0587400 Os07g0587400 OJ1047_C01.9 OSJNBb0005G07.103 OSNPB_070587400,Os07g0587400 OSNPB_070587400 ENOG411DR85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7),Os11g0334938 protein A0A0P0VZ16,A0A0N7KST9 A0A0P0VZ16_ORYSJ,A0A0N7KST9_ORYSJ Os03g0434800 OSNPB_030434800,Os11g0334938 OSNPB_110334938 ENOG411DR88 PCMP-E3 Q9LR72 PPR7_ARATH Putative pentatricopeptide repeat-containing protein At1g03510 47577 Putative pentatricopeptide repeat-containing protein At1g03510 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2020763; AT1G03510 Pentatricopeptide repeat-containing protein Os03g0852000 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J023133O06, full insert sequence) Q10AH5 Q10AH5_ORYSJ Os03g0852000 LOC_Os03g63510 OSNPB_030852000 ENOG411DR89 BZIP18,AtbZIP52,bZIP52 O22873,Q8VWG0,F4HNU1 BZP18_ARATH,Q8VWG0_ARATH,F4HNU1_ARATH bZIP transcription factor 18 (AtbZIP18) (bZIP protein 18),AtbZIP transcription factor (Basic leucine-zipper 52) (Similar to bZIP transcription factors),Basic leucine-zipper 52 DISRUPTION PHENOTYPE: Pollen morphological defects. {ECO:0000269|PubMed:27896439}. FUNCTION: Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. 40667,37054,25537 bZIP transcription factor 18 (AtbZIP18) (bZIP protein 18),AtbZIP transcription factor (Basic leucine-zipper 52) (Similar to bZIP transcription factors),Basic leucine-zipper 52 cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; perinuclear region of cytoplasm [GO:0048471]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700],cytosol [GO:0005829]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}. locus:2061908;,locus:2033123; AT2G40620,AT1G06850 Transcription factor Transcription factor RF2b Q6S4P4 RF2B_ORYSJ RF2b Os03g0336200 LOC_Os03g21800 FUNCTION: Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. ENOG411DR8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor like protein Os01g0132100 protein A0A0N7KC99 A0A0N7KC99_ORYSJ Os01g0132100 OSNPB_010132100 ENOG411DR8S ZFN1,ZFN3 Q8GXX7,Q8L7N8,A0A1P8BAG3,A0A1I9LM16 C3H33_ARATH,C3H57_ARATH,A0A1P8BAG3_ARATH,A0A1I9LM16_ARATH Zinc finger CCCH domain-containing protein 33 (AtC3H33) (Zinc finger CCCH domain-containing protein ZFN1),Zinc finger CCCH domain-containing protein 57 (AtC3H57) (Zinc finger type domain-containing protein ZFN3),Zinc finger nuclease 3,Zinc finger protein 1 44181,41526,30054,42074 Zinc finger CCCH domain-containing protein 33 (AtC3H33) (Zinc finger CCCH domain-containing protein ZFN1),Zinc finger CCCH domain-containing protein 57 (AtC3H57) (Zinc finger type domain-containing protein ZFN3),Zinc finger nuclease 3,Zinc finger protein 1 cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 5'-UTR binding [GO:0048027]; mRNA binding [GO:0003729]; nuclease activity [GO:0004518]; phytochrome binding [GO:0010313]; negative regulation of translation [GO:0017148],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518],metal ion binding [GO:0046872] locus:2075477;,locus:2171407; AT3G02830,AT5G16540 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 12 (OsC3H12) (Zinc finger CCCH domain-containing protein ZFN-like 2),Os01g0917400 protein (Fragment) Q5JLB5,A0A0P0VC18,A0A0P0VC32 C3H12_ORYSJ,A0A0P0VC18_ORYSJ,A0A0P0VC32_ORYSJ Os01g0917400 LOC_Os01g68860 P0413C03.19-1 P0413C03.19-2,Os01g0917400 OSNPB_010917400 ENOG411DR8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M3 Os01g0902200 protein (Putative thimet oligopeptidase) Q5N6Y0 Q5N6Y0_ORYSJ Os01g0902200 Os01g0902200 OSNPB_010902200 P0551C06.20 ENOG411DR8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root hair defective 3 GTP-binding protein (RHD3) NA NA NA NA NA NA NA ENOG411DR8V PAT17 Q3EBC2,A0A1I9LP21 ZDHC5_ARATH,A0A1I9LP21_ARATH Probable protein S-acyltransferase 17 (EC 2.3.1.225) (Probable palmitoyltransferase At3g04970) (Zinc finger DHHC domain-containing protein At3g04970),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.5}. 2.3.1.225; 2.3.1.225 44946,34879 Probable protein S-acyltransferase 17 (EC 2.3.1.225) (Probable palmitoyltransferase At3g04970) (Zinc finger DHHC domain-containing protein At3g04970),S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) cytoplasmic vesicle membrane [GO:0030659]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706],integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2114895; AT3G04970 zinc finger S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q10L01 Q10L01_ORYSJ LOC_Os03g24900 Os03g0363900 OSNPB_030363900 ENOG411DR8W UGE5,UGE2 Q9SN58,Q9T0A7 UGE5_ARATH,UGE2_ARATH UDP-glucose 4-epimerase 5 (AtUGE5) (EC 5.1.3.2) (UDP-galactose 4-epimerase 5),UDP-glucose 4-epimerase 2 (AtUGE2) (EC 5.1.3.2) (UDP-galactose 4-epimerase 2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17496119}.,DISRUPTION PHENOTYPE: No visible phenotype. Uge2 and uge3 double mutant is almost completely sterile. Uge2 and uge4 double mutant displays a reduction in rosette and root growth, hypocotyl elongation, and secondary hypocotyl thickening (PubMed:17496119). {ECO:0000269|PubMed:17496119}. Short hypocotyl in the dark-G. Seifert-2007 FUNCTION: Catalyzes the interconversion between UDP-glucose and UDP-galactose. {ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:19754426}.,FUNCTION: Catalyzes the interconversion between UDP-glucose and UDP-galactose. Cooperates with UGE3 in pollen development and with UGE4 in cell wall carbohydrate biosynthesis and growth. {ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119, ECO:0000269|PubMed:19754426, ECO:0000269|Ref.6}. PATHWAY: Carbohydrate metabolism; galactose metabolism. R-ATH-70370; 5.1.3.2;5.1.3.5; Galactose metabolism (00052),Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Metabolic pathways (01100) 5.1.3.2 38618,38382 UDP-glucose 4-epimerase 5 (AtUGE5) (EC 5.1.3.2) (UDP-galactose 4-epimerase 5),UDP-glucose 4-epimerase 2 (AtUGE2) (EC 5.1.3.2) (UDP-galactose 4-epimerase 2) UDP-glucose 4-epimerase activity [GO:0003978]; galactose metabolic process [GO:0006012],cytosol [GO:0005829]; UDP-glucose 4-epimerase activity [GO:0003978]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; galactose metabolic process [GO:0006012] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12419184, ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119}.,TISSUE SPECIFICITY: Ubiquitous. Most highly expressed in stems and flowers. {ECO:0000269|PubMed:12419184, ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119, ECO:0000269|Ref.6}. locus:2123466;,locus:2138121; AT4G10960,AT4G23920 UDP-glucose 4-epimerase UDP-glucose 4-epimerase 3 (OsUGE-3) (EC 5.1.3.2) (UDP-galactose 4-epimerase 3),UDP-glucose 4-epimerase 1 (OsUGE-1) (EC 5.1.3.2) (UDP-galactose 4-epimerase 1),Os05g0595100 protein Q652A8,Q8LNZ3,A0A0N7KLC9 UGE3_ORYSJ,UGE1_ORYSJ,A0A0N7KLC9_ORYSJ UGE-3 Os09g0526700 LOC_Os09g35800 OJ1439_F07.18 OsJ_30076,UGE-1 Os05g0595100 LOC_Os05g51670 OsJ_19776 OSJNBa0030I14.9,Os05g0595100 OSNPB_050595100 FUNCTION: Catalyzes the interconversion between UDP-glucose and UDP-galactose. {ECO:0000250}. ENOG411DR8T A0A1P8B6U5,F4JTW1 A0A1P8B6U5_ARATH,F4JTW1_ARATH Zinc ion binding protein 68280,88349 Zinc ion binding protein zinc ion binding [GO:0008270] locus:2129271; AT4G13970 zinc ion binding protein Os07g0227700 protein Q0D7P1 Q0D7P1_ORYSJ Os07g0227700 Os07g0227700 OsJ_23599 OSNPB_070227700 ENOG411DR8U RPS11A,RPS11B,RPS11C P16181,O65569,P42733 RS111_ARATH,RS112_ARATH,RS113_ARATH 40S ribosomal protein S11-1 (Protein EMBRYO DEFECTIVE 1080),40S ribosomal protein S11-2,40S ribosomal protein S11-3 Embryo defective; Gametophyte defective (inferred)-D. Meinke-2002 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 17957,17931,17749 40S ribosomal protein S11-1 (Protein EMBRYO DEFECTIVE 1080),40S ribosomal protein S11-2,40S ribosomal protein S11-3 cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2101278;,locus:2126639;,locus:2172783; AT3G48930,AT4G30800,AT5G23740 ribosomal protein Os08g0207000 protein (Fragment),Os04g0613600 protein (Os07g0565000 protein) (Os07g0565100 protein) (Putative 40S ribosomal protein S11) (cDNA clone:J023056G18, full insert sequence),Os04g0502300 protein,Os04g0613500 protein (Fragment) Q0J7A8,Q7XIK5,Q0JBY8,Q0JA68 Q0J7A8_ORYSJ,Q7XIK5_ORYSJ,Q0JBY8_ORYSJ,Q0JA68_ORYSJ Os08g0207000 Os08g0207000 OSNPB_080207000,OJ1773_H01.103 OJ1112_E08.122 Os07g0565100 Os04g0613600 Os07g0565000 OsJ_24764 OSNPB_040613600 OSNPB_070565000 OSNPB_070565100,Os04g0502300 Os04g0502300 OSNPB_040502300,Os04g0613500 Os04g0613500 OSNPB_040613500 ENOG411DR8Z APTG1 Q94A15,A0A1P8BD29,A0A1P8BD32,A0A1P8BD62,F4K887 Q94A15_ARATH,A0A1P8BD29_ARATH,A0A1P8BD32_ARATH,A0A1P8BD62_ARATH,F4K887_ARATH Mannosyltransferase (EC 2.4.1.-) R-ATH-162710; 2.4.1.- 62701,45059,59406,53798,60380 Mannosyltransferase (EC 2.4.1.-) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; pollen tube [GO:0090406]; mannosyltransferase activity [GO:0000030]; embryo development ending in seed dormancy [GO:0009793]; GPI anchor biosynthetic process [GO:0006506]; pollen tube guidance [GO:0010183],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2185485; AT5G14850 GPI mannosyltransferase Mannosyltransferase (EC 2.4.1.-) B7EFX6,Q656F1 B7EFX6_ORYSJ,Q656F1_ORYSJ Os01g0580100 OSNPB_010580100,P0672C09.18-1 P0013G02.38-1 Os01g0580100 OSNPB_010580100 ENOG411DR8X EDA25 F4IDC2 F4IDC2_ARATH CCAAT-binding factor Female and male gametophyte defective; Embryo defective-W. Yang-2009 117024 CCAAT-binding factor nucleolus [GO:0005730]; embryo sac development [GO:0009553]; polar nucleus fusion [GO:0010197] locus:2193972; AT1G72440 CCAAT enhancer-binding protein CCAAT-box-binding transcription factor-like protein (Os09g0116400 protein) (cDNA clone:J033034O16, full insert sequence),Os09g0116400 protein (Fragment) Q6YU01,A0A0P0XIY4 Q6YU01_ORYSJ,A0A0P0XIY4_ORYSJ Os09g0116400 OSNPB_090116400 P0563F09.20 P0598D02.6,Os09g0116400 OSNPB_090116400 ENOG411DR8Y GBF1 P42774 GBF1_ARATH G-box-binding factor 1 (AtGBF1) (bZIP transcription factor 41) (AtbZIP41) FUNCTION: Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. 33932 G-box-binding factor 1 (AtGBF1) (bZIP transcription factor 41) (AtbZIP41) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; negative regulation of gene expression [GO:0010629]; regulation of cell aging [GO:0090342]; regulation of hydrogen peroxide metabolic process [GO:0010310]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Found in both light and dark grown leaves. locus:2115250; AT4G36730 Transcription factor NA NA NA NA NA NA NA ENOG411DR8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Per1-like Expressed protein (Os10g0524100 protein) (Per1-like family protein, expressed) (cDNA clone:J033041C15, full insert sequence) Q8H096 Q8H096_ORYSJ Os10g0524100 LOC_Os10g38030 Os10g0524100 OsJ_32212 OSNPB_100524100 ENOG411DR8C MKN22.4 Q9LVC1,Q9LJE0,Q9C8A7 Q9LVC1_ARATH,Q9LJE0_ARATH,Q9C8A7_ARATH Similarity to carboxyl-terminal proteinase (Uncharacterized protein At5g56530) (tRNA-splicing ligase (DUF239)),AT3g13510/MRP15_15 (Carboxyl-terminal peptidase, putative (DUF239)),At1g55360 (Uncharacterized protein F7A10.1) (tRNA-splicing ligase (DUF239)) 47231,47355,47310 Similarity to carboxyl-terminal proteinase (Uncharacterized protein At5g56530) (tRNA-splicing ligase (DUF239)),AT3g13510/MRP15_15 (Carboxyl-terminal peptidase, putative (DUF239)),At1g55360 (Uncharacterized protein F7A10.1) (tRNA-splicing ligase (DUF239)) ligase activity [GO:0016874] locus:2167121;,locus:2092870;,locus:2035666; AT5G56530,AT3G13510,AT1G55360 carboxyl-terminal peptidase Os07g0573400 protein (Putative carboxyl-terminal proteinase) (cDNA clone:001-038-E10, full insert sequence) (cDNA clone:J013001O09, full insert sequence) (cDNA clone:J033075B20, full insert sequence) (cDNA clone:J033106A21, full insert sequence),Os07g0205500 protein (Putative DD1A protein) (cDNA clone:J033129H24, full insert sequence),Carboxyl-terminal peptidase, putative, expressed (Os03g0807100 protein) Q6ZL19,Q6ZIY2,Q84M37 Q6ZL19_ORYSJ,Q6ZIY2_ORYSJ,Q84M37_ORYSJ Os07g0573400 Os07g0573400 OJ1699_E05.18 OsJ_24827 OSNPB_070573400,Os07g0205500 Os07g0205500 OJ1119_B04.4 OSNPB_070205500,Os03g0807100 LOC_Os03g59240 OsJ_13035 OSJNBa0059E14.15 OSNPB_030807100 ENOG411DR8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os07g0162400 protein (Putative cell death associated protein) (cDNA clone:006-306-D11, full insert sequence) Q8GSJ3 Q8GSJ3_ORYSJ OJ1714_H10.149 P0428D12.102 Os07g0162400 OSNPB_070162400 ENOG411DR8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA R3H domain Os01g0100600 protein (cDNA clone:J023124E16, full insert sequence) Q655L7 Q655L7_ORYSJ Os01g0100600 Os01g0100600 OSJNOa264G09.5 OSNPB_010100600 P0672D08.5 ENOG411DR8G RDR6 Q9SG02,Q9SHT7,Q58G28 RDR6_ARATH,Q9SHT7_ARATH,Q58G28_ARATH RNA-dependent RNA polymerase 6 (AtRDRP6) (EC 2.7.7.48) (Protein SILENCING DEFECTIVE 1) (Protein SUPPRESSOR OF GENE SILENCING 2) (RNA-directed RNA polymerase 6),RNA-dependent RNA polymerase-like protein (Uncharacterized protein At2g05370),RNA-dependent RNA polymerase-like protein DISRUPTION PHENOTYPE: First leaves are elongated and curl downward. Presence of stigmatic tissue in the middle of the septum at the apical end of the carpels. Altered post-transcriptional gene silencing (PTGS). Accumulation of ARF4 mRNA (targeted by TAS3-derived siRNAs). Upon infection, over-accumulation of CMV RNA and enhanced susceptibility to cucumber mosaic virus (CMV). Reduced levels of TMV-cg-derived small RNAs. {ECO:0000269|PubMed:10850495, ECO:0000269|PubMed:10850496, ECO:0000269|PubMed:15466488, ECO:0000269|PubMed:17384170, ECO:0000269|PubMed:19308254, ECO:0000269|PubMed:20208518}. A proportion of pre-meiotic ovules have two MMCs and have several abnormally enlarged sub-epidermal cells. Post-meiotic ovules showed two independently developing female gametophytes at a frequency of 43.3%,Infection with cucumber mosaic virus (CMV) revealed an overaccumulation of CMV RNA compared to wild type.,No obvious leaf developmental defects.,TAS3 but not TAS1 or TAS2 ta-siRNAs were detected.,Reduction in post-transcriptional gene silencing.,Downward-curled leaf margins.,Enhanced susceptibility to virus reduction in post-transcriptional gene silencing,TAS1 TAS2 and TAS3 ta-siRNAs were below detectable levels.,Restoration of GUS activity of the transgene through inhibition of silencing.,TAS1 TAS2 and TAS3 ta-siRNAs were detected. Susceptible to viral infection-H. Vaucheret-2000 FUNCTION: RNA-dependent RNA polymerase involved in post-transcriptional gene silencing (PTGS). Possesses ssRNA and ssDNA-dependent polymerase activity, but does not have priming activity. Possesses in vitro 3' nucleotidyltransferase activity in the presence of UTP as single nucleotide. Required for the production of 21 nucleotide trans-acting small interfering RNAs (ta-siRNAs) derived from TAS1, TAS2 and TAS3 endogenous transcripts. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Required for the production of natural siRNAs (nat-siRNAs) derived from cis-natural antisense transcripts. Required for the production of 24 nucleotide nat-siRNAs derived from the stress-related P5CDH-SRO5 antisense gene pair. Required for PTGS induced by transgene direct repeats. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and DCL4, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Involved in the biogenesis of secondary siRNAs which require 22 nucleotide miRNAs associated to AGO1. Participates synergistically with AS1 and AS2 to proper plant development by repressing the miR165 and miR166 microRNAs (independently of AGO10) that may lead to mRNA degradation of genes in the class III HD-ZIP family. Required for the production of some small RNAs derived from the crucifer-infecting tobamovirus (TMV-cg). Required for sense virus-induced post-transcriptional gene silencing (S-PTGS). {ECO:0000269|PubMed:10850495, ECO:0000269|PubMed:10850496, ECO:0000269|PubMed:15165191, ECO:0000269|PubMed:15466488, ECO:0000269|PubMed:16006579, ECO:0000269|PubMed:16131612, ECO:0000269|PubMed:16377568, ECO:0000269|PubMed:16682354, ECO:0000269|PubMed:17384170, ECO:0000269|PubMed:18063577, ECO:0000269|PubMed:19308254, ECO:0000269|PubMed:20208518, ECO:0000269|PubMed:20562854}. 2.7.7.48; 2.7.7.48 136929,24294,16095 RNA-dependent RNA polymerase 6 (AtRDRP6) (EC 2.7.7.48) (Protein SILENCING DEFECTIVE 1) (Protein SUPPRESSOR OF GENE SILENCING 2) (RNA-directed RNA polymerase 6),RNA-dependent RNA polymerase-like protein (Uncharacterized protein At2g05370),RNA-dependent RNA polymerase-like protein nucleus [GO:0005634]; DNA-directed DNA polymerase activity [GO:0003887]; RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]; carpel development [GO:0048440]; defense response to virus [GO:0051607]; gene silencing by RNA [GO:0031047]; gynoecium development [GO:0048467]; leaf development [GO:0048366]; production of siRNA involved in RNA interference [GO:0030422]; production of ta-siRNAs involved in RNA interference [GO:0010267]; recognition of pollen [GO:0048544]; RNA interference [GO:0016246]; virus induced gene silencing [GO:0009616],RNA-directed 5'-3' RNA polymerase activity [GO:0003968] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16006579}. locus:2114633;,locus:2042808; AT3G49500,AT2G05370 rna-dependent rna polymerase Probable RNA-dependent RNA polymerase SHL2 (EC 2.7.7.48) (Protein SHOOTLESS 2),RNA-dependent RNA polymerase (EC 2.7.7.48) (Fragment) Q8LHH9,A0A0P0V3H7 SHL2_ORYSJ,A0A0P0V3H7_ORYSJ SHL2 Os01g0527600 LOC_Os01g34350 B1074C08.31,Os01g0527600 OSNPB_010527600 DISRUPTION PHENOTYPE: Lack of the shoot apical meristem (SAM) in the embryo, but formation of radicle and scutellum. In weak alleles, formation of an incomplete SAM and abnormal leaves production. {ECO:0000269|PubMed:17804793}. FUNCTION: Involved in the RNA silencing pathway. Probably required for the generation of small interfering RNAs (siRNAs). Regulates shoot apical meristem (SAM) initiation and maintenance and leaf polarization through the trans-acting siRNAS (ta-siRNAs) pathway which probably modulates the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. {ECO:0000269|PubMed:17804793}.,FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000256|RuleBase:RU363098}. ENOG411DR8D ATTLP1,F20M13.220,TLP1 F4JNX4,Q9STX6,Q9SZP4,Q8VYN5,A0A1P8B554,A0A1P8B570,F4JQ53,A0A1P8B549,A0A1P8B562 F4JNX4_ARATH,Q9STX6_ARATH,Q9SZP4_ARATH,Q8VYN5_ARATH,A0A1P8B554_ARATH,A0A1P8B570_ARATH,F4JQ53_ARATH,A0A1P8B549_ARATH,A0A1P8B562_ARATH Pathogenesis-related thaumatin superfamily protein,THAUMATIN-LIKE PROTEIN 1 (Thaumatin-like protein),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin-like protein),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin) (Putative thaumatin protein) (Thaumatin-like protein),THAUMATIN-LIKE PROTEIN 1 FUNCTION: Involved in local responses of roots to colonization by non-pathogenic plant growth-promoting rhizobacteria (PGPR) fluorescent Pseudomonas spp., but seems to not being required for the establishment of subsequent induced systemic resistance (ISR). {ECO:0000269|PubMed:15988566}. 21979,26917,33127,35437,27451,35782,33256,35248,32722 Pathogenesis-related thaumatin superfamily protein,THAUMATIN-LIKE PROTEIN 1 (Thaumatin-like protein),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin-like protein),Pathogenesis-related thaumatin superfamily protein (Putative thaumatin) (Putative thaumatin protein) (Thaumatin-like protein),THAUMATIN-LIKE PROTEIN 1 anchored component of membrane [GO:0031225],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; induced systemic resistance [GO:0009682]; response to bacterium [GO:0009617]; response to ethylene [GO:0009723] locus:2135119;,locus:2121189;,locus:2135882; AT4G36000,AT4G38660,AT4G24180 thaumatin-like protein Os09g0536400 protein (Putative thaumatin-like protein) (cDNA clone:J013131N11, full insert sequence) Q69JY6 Q69JY6_ORYSJ Os09g0536400 Os09g0536400 OSNPB_090536400 P0569E11.21 ENOG411DR8E PAT15 Q500Z2 ZDH20_ARATH Probable protein S-acyltransferase 15 (EC 2.3.1.225) (Probable palmitoyltransferase At5g04270) (Zinc finger DHHC domain-containing protein At5g04270) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.4}. 2.3.1.225; 2.3.1.225 28643 Probable protein S-acyltransferase 15 (EC 2.3.1.225) (Probable palmitoyltransferase At5g04270) (Zinc finger DHHC domain-containing protein At5g04270) cytoplasmic vesicle membrane [GO:0030659]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] locus:2146713; AT5G04270 S-acyltransferase At5g04270-like S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q6K9R3 Q6K9R3_ORYSJ Os02g0819100 OJ1202_E07.17 OsJ_08890 OSNPB_020819100 ENOG411DR8J Q494Q0,Q9S9L9 Q494Q0_ARATH,Q9S9L9_ARATH At3g06170 (Serinc-domain containing serine and sphingolipid biosynthesis protein),Serinc-domain containing serine and sphingolipid biosynthesis protein (T24D18.26 protein) R-ATH-977347; 44877,45955 At3g06170 (Serinc-domain containing serine and sphingolipid biosynthesis protein),Serinc-domain containing serine and sphingolipid biosynthesis protein (T24D18.26 protein) integral component of membrane [GO:0016021]; L-serine transmembrane transporter activity [GO:0015194] locus:2082415;,locus:2200507; AT3G06170,AT1G16180 Serine incorporator Os03g0454100 protein (Putative membrane protein) (TMS membrane family protein, putative, expressed) (cDNA clone:J013093K20, full insert sequence),Os02g0792900 protein (Putative tumor differentially expressed protein 1) (cDNA clone:001-038-C07, full insert sequence) (cDNA clone:001-039-H03, full insert sequence) (cDNA clone:001-208-C06, full insert sequence) Q84SS3,Q6K688 Q84SS3_ORYSJ,Q6K688_ORYSJ Os03g0454100 LOC_Os03g34300 Os03g0454100 OsJ_11423 OSJNBb0047D08.30 OSNPB_030454100,Os02g0792900 Os02g0792900 OJ1249_F12.26 OSNPB_020792900 P0700F06.14 ENOG411DR8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA multicellular organismal development Transcription factor PCF6 Q10CE8 PCF6_ORYSJ PCF6 Os03g0785800 LOC_Os03g57190 FUNCTION: Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. ENOG411DR8H FPA Q8LPQ9,A0A1P8AXG2 FPA_ARATH,A0A1P8AXG2_ARATH Flowering time control protein FPA,RNA binding protein DISRUPTION PHENOTYPE: Late flowering. {ECO:0000269|PubMed:11402170}. late flowering; like fca but less extreme.,late flowering; vernalization has large effect on flowering time under both long days and short days; flowering occurs about 10 days later than wild type. Rosette leaf number at flowering was more than 2 times higher than in the wild type.,late flowering; vernalization affects flowering time under both long days and short days; flowering occurs about 13 days later than wild type. Rosette leaf number at flowering was more than 2 times higher than in the wild type.,Longest delay in flowering (among all fpa mutants). Rosette leaf number at flowering was approximately 5 times higher than in the wild type. Late flowering-R. Amasino-2001 FUNCTION: Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for RNA-mediated chromatin silencing of a range of loci in the genome. Cotranscriptionally recognizes aberrant RNA and marks it for silencing. Controls alternative cleavage and polyadenylation on pre-mRNAs and antisense RNAs. Acts redundantly with FCA to prevent the expression of distally polyadenylated antisense RNAs at the FLC locus. {ECO:0000269|PubMed:11402170, ECO:0000269|PubMed:17916737, ECO:0000269|PubMed:20079695}. MISCELLANEOUS: While FCA requires both FY and FLD, FPA requires FLD but not FY to repress FLC. 99598,83789 Flowering time control protein FPA,RNA binding protein chromatin [GO:0000785]; nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; RNA binding [GO:0003723]; cell differentiation [GO:0030154]; chromatin silencing by small RNA [GO:0031048]; embryo sac development [GO:0009553]; flower development [GO:0009908]; mRNA polyadenylation [GO:0006378]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of flower development [GO:0009911]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],RNA binding [GO:0003723] DEVELOPMENTAL STAGE: Expressed throughout the plant life cycle. {ECO:0000269|PubMed:11402170}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. Highest expression in flower stems and meristematic regions. {ECO:0000269|PubMed:11402170}. locus:2058203; AT2G43410 SPOC domain NA NA NA NA NA NA NA ENOG411DR8I SDG35 F4HPB8 F4HPB8_ARATH SET domain protein 35 61308 SET domain protein 35 locus:2200615; AT1G26760 SET domain Os03g0168700 protein (TPR Domain containing protein) Q8S7V1 Q8S7V1_ORYSJ OSJNBa0091P11.26 LOC_Os03g07260 Os03g0168700 OSNPB_030168700 ENOG411DR8N RGLG2,RGLG1,RGLG5 Q9LY87,Q9SS90,Q8LB88,F4HTR6,A0A1P8ARN9 RGLG2_ARATH,RGLG1_ARATH,RGLG5_ARATH,F4HTR6_ARATH,A0A1P8ARN9_ARATH E3 ubiquitin-protein ligase RGLG2 (EC 2.3.2.27) (RING domain ligase 2),E3 ubiquitin-protein ligase RGLG1 (EC 2.3.2.27) (RING domain ligase 1),E3 ubiquitin-protein ligase RGLG5 (EC 2.3.2.27) (RING domain ligase 5),Copine (Calcium-dependent phospholipid-binding protein) family DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with RGLG1 (PubMed:17586653, PubMed:22095047). Rglg1 and rglg2 double mutants show a complete loss of apical dominance (PubMed:17586653). The double mutant seedlings rglg1 and rglg2 exhibit a dehydration-tolerant phenotype (PubMed:22095047). {ECO:0000269|PubMed:17586653, ECO:0000269|PubMed:22095047}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with RGLG2 (PubMed:17586653, PubMed:22095047). Rglg1 and rglg2 double mutants show a complete loss of apical dominance (PubMed:17586653). The double mutant seedlings rglg1 and rglg2 exhibit a dehydration-tolerant phenotype (PubMed:22095047). {ECO:0000269|PubMed:17586653, ECO:0000269|PubMed:22095047}. No visible phenotype.,The triple mutant had an approximately additive phenotype. They were bushy and displayed the reduced fertility of axr1-12 plants.,Although the overall growth of young rglg1 rglg2 seedlings closely resembled that of wild-type plants the early rosette leaves were more elongated and darker. These early rosette leaves senesce after ~4 to 6 weeks of growth. The first emerging shoots were short and terminated by one or few flowers yielding fertile siliques. Later developing shoots were longer. Another difference between the wild type and the rglg1 rglg2 mutant was leaf shape and architecture. Mutant leaves were more oblong and often asymmetric and had reduced numbers of veins. Whereas leaf initials in the wild type formed a spiral with an ~137.5° angle between leaf initials the rglg1 rglg2 mutant formed two initials opposite to each other and then switched by 90° to form the next pair of opposing leaves. Thus rglg1 rglg2 plants often had a decussate pattern of leaf mergence instead of the spiral pattern of wild-type Arabidopsis. Additional phenotypes of aerial plant parts in particular an increased cell size.,Auxin (IAA) concentration was almost twofold lower in roots of 2-week-old mutant seedlings compared to wild type.,Changes in the concentrations of cytokinin nucleotides and conjugates.,Impaired circadian clock function.,Roots of wild-type and mutant plants were similar in spite of a moderate (14%) reduction in the main root length of plantlets grown on plates.,The double mutant showed a complete loss of apical dominance lacking normal dominance of the central apical meristem and the development of a central inflorescence. All double mutants grown to maturity had >30 shoots of comparable length.,Showed some phenotypic similarity with tir3-1 axr1-12 plants being more bushy than tir3-1 plants and often producing siliques in bundles.,The triple homozygous progeny has low viability accumulated anthocyanin and all plants died before shoot emergence. FUNCTION: E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked ubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance (PubMed:17586653). Mediates ubiquitination and subsequent proteasomal degradation of ERF053 in response to drought stress. Acts as a negative regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:17586653, ECO:0000269|PubMed:22095047}.,FUNCTION: E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked ubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance (PubMed:17586653). Together with RGLG5, mediates the ubiquitination and subsequent proteasomal degradation of the target protein PP2CA. Functions as positive regulator of abscisic acid (ABA) signaling through ABA-dependent degradation of PP2CA, a major inhibitor of ABA signaling (PubMed:27577789). Acts as a negative regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:17586653, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:27577789}.,FUNCTION: Together with RGLG1, mediates the ubiquitination and subsequent proteasomal degradation of the target protein PP2CA. Functions as positive regulator of abscisic acid (ABA) signaling through ABA-dependent degradation of PP2CA, a major inhibitor of ABA signaling. {ECO:0000269|PubMed:27577789}. 2.3.2.27 51578,53312,47498,49987,44972 E3 ubiquitin-protein ligase RGLG2 (EC 2.3.2.27) (RING domain ligase 2),E3 ubiquitin-protein ligase RGLG1 (EC 2.3.2.27) (RING domain ligase 1),E3 ubiquitin-protein ligase RGLG5 (EC 2.3.2.27) (RING domain ligase 5),Copine (Calcium-dependent phospholipid-binding protein) family nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; auxin metabolic process [GO:0009850]; cytokinin metabolic process [GO:0009690]; negative regulation of response to water deprivation [GO:0080148],nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of response to water deprivation [GO:0080148]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; protein K63-linked ubiquitination [GO:0070534],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:17586653}. locus:2145643;,locus:2084218;,locus:2008570; AT5G14420,AT3G01650,AT1G67800 E3 ubiquitin-protein ligase Copine, putative, expressed (Os12g0288400 protein) (cDNA clone:J023075N19, full insert sequence),Copine III-like (Os01g0908700 protein) Q2QTN7,Q5N6Z8 Q2QTN7_ORYSJ,Q5N6Z8_ORYSJ Os12g0288400 LOC_Os12g19030 Os12g0288400 OSNPB_120288400,Os01g0908700 Os01g0908700 B1417F08.38 OSNPB_010908700 P0456E05.11 ENOG411DR8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1_YhbY Os09g0363100 protein (Putative CRS1),Os09g0363400 protein Q6K4E4,A0A0P0XM74 Q6K4E4_ORYSJ,A0A0P0XM74_ORYSJ Os09g0363100 OJ1001_G09.2 OJ1506_A04.16 OsJ_15500 OSNPB_090363100,Os09g0363400 OSNPB_090363400 ENOG411E0RJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat family protein expressed Leucine Rich Repeat family protein, expressed (Os11g0173500 protein) (cDNA clone:J013160M10, full insert sequence),Leucine Rich Repeat family protein, expressed (Leucine Rich Repeat, putative) (Os11g0171800 protein),Leucine Rich Repeat family protein, expressed (Leucine Rich Repeat, putative) (Os11g0173800 protein),Os11g0173500 protein (Fragment),Leucine Rich Repeat family protein, expressed (Leucine Rich Repeat, putative) (Os11g0173900 protein),Os07g0251900 protein,Os11g0173432 protein,Os11g0172150 protein,Os11g0173550 protein (Fragment),Os11g0172350 protein,Os11g0172300 protein (Fragment),Os11g0172400 protein,Os11g0173700 protein,Os11g0173750 protein Q2R9X8,Q53P83,Q53PC9,C7J9B0,Q53PC8,Q0D7F8,A0A0P0XZM1,A0A0P0Y095,A0A0P0XZB3,A0A0P0XZC8,A0A0P0XZP1,A0A0N7KSI1,A0A0N7KSI2,A0A0P0XZG4 Q2R9X8_ORYSJ,Q53P83_ORYSJ,Q53PC9_ORYSJ,C7J9B0_ORYSJ,Q53PC8_ORYSJ,Q0D7F8_ORYSJ,A0A0P0XZM1_ORYSJ,A0A0P0Y095_ORYSJ,A0A0P0XZB3_ORYSJ,A0A0P0XZC8_ORYSJ,A0A0P0XZP1_ORYSJ,A0A0N7KSI1_ORYSJ,A0A0N7KSI2_ORYSJ,A0A0P0XZG4_ORYSJ Os11g0173500 LOC_Os11g07230 OSNPB_110173500,Os11g0171800 LOC_Os11g07060 Os11g0171800 OSNPB_110171800,Os11g0173800 LOC_Os11g07260 OsJ_33142 OSNPB_110173800,Os11g0173500 OSNPB_110173500,Os11g0173900 LOC_Os11g07270 OSNPB_110173900,Os07g0251900 Os07g0251900 OSNPB_070251900,Os11g0173432 OSNPB_110173432,Os11g0172150 OSNPB_110172150,Os11g0173550 OSNPB_110173550,Os11g0172350 OSNPB_110172350,Os11g0172300 OSNPB_110172300,Os11g0172400 OSNPB_110172400,Os11g0173700 OSNPB_110173700,Os11g0173750 OSNPB_110173750 ENOG411DZJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CO_deh_flav_C Os07g0164900 protein (cDNA clone:J033131J21, full insert sequence),Os10g0486950 protein B7F856,A0A0P0XWH1 B7F856_ORYSJ,A0A0P0XWH1_ORYSJ Os07g0164900 OSNPB_070164900,Os10g0486950 OSNPB_100486950 ENOG411E0RG O49362 O49362_ARATH At4g32290 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At4g32290) (Uncharacterized protein F10M6.70) 44042 At4g32290 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At4g32290) (Uncharacterized protein F10M6.70) membrane [GO:0016020]; plasmodesma [GO:0009506]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2116515; AT4G32290 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411DZJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger Os06g0717600 protein (Putative NEP1-interacting protein 2) (Zinc finger protein) (cDNA clone:001-040-F07, full insert sequence) (cDNA clone:J013096G12, full insert sequence) Q5Z8P1 Q5Z8P1_ORYSJ Os06g0717600 OsJ_22676 OSNPB_060717600 P0541C02.15 ENOG411DZJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uroporphyrinogen decarboxylase NA NA NA NA NA NA NA ENOG411E0RV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However all known phosphorylases share catalytic and structural properties (By similarity) NA NA NA NA NA NA NA ENOG411E0MN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH Os08g0177800 protein (Putative RNase H domain-containing protein) Q6ZBS0 Q6ZBS0_ORYSJ Os08g0177800 OJ1120_C08.19 OsJ_26246 OSNPB_080177800 P0583B06.27 ENOG411E0K7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-methyltransferase Tricin synthase 2 (EC 2.1.1.175) (Caffeoyl-CoA 3-O-methyltransferase ROMT17) Q7F8T6 OMT17_ORYSJ ROMT-17 Os08g0498400 LOC_Os08g38910 OsJ_27815 P0026F07.26-1 P0026F07.26-2 FUNCTION: Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme. {ECO:0000269|PubMed:17943312}. ENOG411E3JN RPL36AA; RPL36AB,API2 O23290,F4JUQ4 RL36A_ARATH,F4JUQ4_ARATH 60S ribosomal protein L36a,Zinc-binding ribosomal protein family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 12125,17258 60S ribosomal protein L36a,Zinc-binding ribosomal protein family protein cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2090885;,locus:2129620; AT3G23390AT4G14320;,AT4G14320 60S ribosomal protein Os07g0450000 protein (Os07g0523100 protein) (Os07g0523150 protein) (Os07g0523500 protein) (Putative 60S ribosomal protein L44) (cDNA clone:001-121-E03, full insert sequence) (cDNA clone:J033073H17, full insert sequence),Os07g0523300 protein (Os07g0523500 protein) (Os07g0523700 protein) (Fragment) Q8H5N0,Q0D5Z2,A0A0P0X6S4 Q8H5N0_ORYSJ,Q0D5Z2_ORYSJ,A0A0P0X6S4_ORYSJ OJ1047_A06.130 Os07g0523100 Os07g0523150 Os07g0450000 Os07g0523500 OSNPB_070450000 OSNPB_070523100 OSNPB_070523150,Os07g0523700 Os07g0523500 Os07g0523300 OSNPB_070523300 OSNPB_070523500 OSNPB_070523700,Os07g0523500 Os07g0523300 Os07g0523700 OSNPB_070523300 OSNPB_070523500 OSNPB_070523700 ENOG411E3JI T16L1.210 O81888 O81888_ARATH AT4g33720 (AT4g33720/T16L1_210) (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (Pathogenesis-related protein 1, 19.3K) (Putative pathogenesis-related protein 1, 19.3K) 18492 AT4g33720 (AT4g33720/T16L1_210) (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (Pathogenesis-related protein 1, 19.3K) (Putative pathogenesis-related protein 1, 19.3K) extracellular region [GO:0005576] locus:2134178; AT4G33720 Pathogenesis-related protein Os07g0124900 protein (Os07g0125500 protein) (Os07g0126301 protein) (Putative pathogenesis-related protein) Q84J76 Q84J76_ORYSJ P0474G09.134 Os07g0125500 Os07g0126301 P0474G09.121 P0474G09.147 Os07g0124900 B1249D05.3 OJ1212_C12.11 OJ1212_C12.24 OSNPB_070124900 OSNPB_070125500 OSNPB_070126301 ENOG411E3JG Q9LFK7 Q9LFK7_ARATH Carbon-sulfur lyase (Uncharacterized protein At5g16940) (Uncharacterized protein At5g16940/F2K13_90) (Uncharacterized protein F2K13_90) 15017 Carbon-sulfur lyase (Uncharacterized protein At5g16940) (Uncharacterized protein At5g16940/F2K13_90) (Uncharacterized protein F2K13_90) carbon-sulfur lyase activity [GO:0016846]; metabolic process [GO:0008152] locus:2148221; AT5G16940 centromere protein V-like Os09g0397700 protein (Putative nuclear protein p30) (cDNA clone:002-135-G09, full insert sequence) (cDNA clone:002-174-F08, full insert sequence) Q6ERD5 Q6ERD5_ORYSJ Os09g0397700 Os09g0397700 OJ1655_B12.20 OSNPB_090397700 ENOG411E3JA Q8L7S9,Q6NPF9 TRXY2_ARATH,TRXY1_ARATH Thioredoxin Y2, chloroplastic (AtTrxy2),Thioredoxin Y1, chloroplastic (AtTrxy1) FUNCTION: Thiol-disulfide oxidoreductase that poorly activates chloroplastic malate dehydrogenase (NADP-MDH) and fructose-1,6-bisphosphatase. Provides reducing equivalents for peroxiredoxin Q. {ECO:0000269|PubMed:15531707}. R-ATH-3299685; 18592,19250 Thioredoxin Y2, chloroplastic (AtTrxy2),Thioredoxin Y1, chloroplastic (AtTrxy1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; enzyme activator activity [GO:0008047]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; positive regulation of catalytic activity [GO:0043085]; response to light stimulus [GO:0009416],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; enzyme activator activity [GO:0008047]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; positive regulation of catalytic activity [GO:0043085] DEVELOPMENTAL STAGE: Expression decreases in developing seeds and increases during seed germination. {ECO:0000269|PubMed:15531707}.,DEVELOPMENTAL STAGE: Expression increases in developing seeds and decreases during seed germination. {ECO:0000269|PubMed:15531707}. TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15531707}.,TISSUE SPECIFICITY: Expressed in roots and seeds. {ECO:0000269|PubMed:15531707}. locus:2194661;,locus:2030051; AT1G43560,AT1G76760 Thioredoxin Thioredoxin Y, chloroplastic (OsTrxy),Os01g0963400 protein (Fragment) Q5JMR9,A0A0P0VD48 TRXY_ORYSJ,A0A0P0VD48_ORYSJ Os01g0963400 LOC_Os01g73234 P0483G10.36,Os01g0963400 OSNPB_010963400 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411E0K9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3JV PNSL2 Q9XI73 PNSL2_ARATH Photosynthetic NDH subunit of lumenal location 2, chloroplastic (PsbQ-like protein 1) DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity leading to the loss of post-illumination increases in Chl fluorescence, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:20430763, ECO:0000269|PubMed:20460499}. Mutant plant Does Not show the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness.,Mutant plants showed the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness. Decreased post-illumination chlorophyll fluorescence-E. Aro-2010 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (Probable). Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex (PubMed:20430763, PubMed:20460499). {ECO:0000269|PubMed:20430763, ECO:0000269|PubMed:20460499, ECO:0000305}. 22157 Photosynthetic NDH subunit of lumenal location 2, chloroplastic (PsbQ-like protein 1) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; nitrite reductase complex [NAD(P)H] [GO:0009344]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; photosynthetic electron transport chain [GO:0009767]; transport [GO:0006810] locus:2035775; AT1G14150 enhancer protein Os02g0578400 protein (Putative Oxygen-evolving enhancer protein 3-2, chloroplast (OEE3)) Q6EP57 Q6EP57_ORYSJ Os02g0578400 B1267B06.4 B1342F01.35 OSNPB_020578400 ENOG411E3JU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: hydroxyproline-rich glycoprotein Os03g0852000 protein C7J047 C7J047_ORYSJ Os03g0852000 OSNPB_030852000 ENOG411EGH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family NA NA NA NA NA NA NA ENOG411E3J8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60S ribosomal protein 60S ribosomal protein L30,Os05g0490100 protein (Putative 60S ribosomal protein L30) (cDNA clone:J023042D20, full insert sequence),Os01g0812800 protein (Putative ribosomal protein L30) (cDNA clone:001-109-A05, full insert sequence) Q9SDG6,Q6F331,Q5VQR3 RL30_ORYSJ,Q6F331_ORYSJ,Q5VQR3_ORYSJ RPL30 Os01g0276000 LOC_Os01g16890 OsJ_01280 P0038F12.17,Os05g0490100 OJ1119_H02.22 OsJ_19016 OSJNBa0088I06.1 OSNPB_050490100,Os01g0812800 OsJ_03839 OSNPB_010812800 P0425G02.30 ENOG411E0KT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411EDNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411DYDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DYDT RGGA,RGGB O23523,O23593 RGGA_ARATH,RGGB_ARATH RGG repeats nuclear RNA binding protein A (AtRGGA),RGG repeats nuclear RNA binding protein B DISRUPTION PHENOTYPE: Larger rosettes and delayed flowering in long days (16 h of light/8 h of darkness). Higher sensitivity to salt (NaCl). Hypersensitivity to the presence of abscisic acid (ABA). {ECO:0000269|PubMed:25783413}. FUNCTION: Binds RNA. Regulates responses to abscisic acid (ABA). Promotes stomata closure in drought conditions. Involved in resistance to salt and drought stresses via the accumulation of Pro. {ECO:0000269|PubMed:25783413}.,FUNCTION: Binds RNA. {ECO:0000250|UniProtKB:Q9SQ56}. 37468,38905 RGG repeats nuclear RNA binding protein A (AtRGGA),RGG repeats nuclear RNA binding protein B cytoplasm [GO:0005737]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; mRNA binding [GO:0003729]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to osmotic stress [GO:0071470]; cellular response to salt stress [GO:0071472]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],cytosol [GO:0005829]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; peroxisome [GO:0005777]; mRNA binding [GO:0003729]; response to cytokinin [GO:0009735] DEVELOPMENTAL STAGE: In leaves, especially present in stomata guard cells. In reproductive organs, expressed in pollen grains and tubes of germinating pollen, as well as in funiculi attaching seeds to siliques. {ECO:0000269|PubMed:25783413}. TISSUE SPECIFICITY: Expressed in seedlings, leaves, roots, inflorescences, and siliques (PubMed:25783413). Constitutively expressed in seedlings and roots (PubMed:11905967). {ECO:0000269|PubMed:11905967, ECO:0000269|PubMed:25783413}. locus:2129191;,locus:2129156; AT4G16830,AT4G17520 plasminogen activator inhibitor 1 RNA-binding protein Os01g0721900 protein (Fragment) A0A0P0V7J9 A0A0P0V7J9_ORYSJ Os01g0721900 OSNPB_010721900 ENOG411DYDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os01g0118400 protein A0A0P0UXI8 A0A0P0UXI8_ORYSJ Os01g0118400 OSNPB_010118400 ENOG411DYDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0141600 protein,Os11g0147200 protein A0A0P0Y6T4,A0A0P0XZ57 A0A0P0Y6T4_ORYSJ,A0A0P0XZ57_ORYSJ Os12g0141600 OSNPB_120141600,Os11g0147200 OSNPB_110147200 ENOG411DYDQ P0C043,Q56XR6 PP318_ARATH,PP421_ARATH Putative pentatricopeptide repeat-containing protein At4g17915,Pentatricopeptide repeat-containing protein At5g46680 52859,52506 Putative pentatricopeptide repeat-containing protein At4g17915,Pentatricopeptide repeat-containing protein At5g46680 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2178550; AT4G17915,AT5G46680 Pentatricopeptide repeat-containing protein Os02g0793200 protein (cDNA clone:J033027K13, full insert sequence) Q0DWV7 Q0DWV7_ORYSJ Os02g0793200 Os02g0793200 OSNPB_020793200 ENOG411DYDP MQN23.19 C0LGX1,C0LGT1,F4KGL1 Y5524_ARATH,Y5129_ARATH,F4KGL1_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g65240 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 67718,68659,71448 Probable LRR receptor-like serine/threonine-protein kinase At5g65240 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2145407;,locus:2171855; AT5G65240,AT5G10290 LRR receptor-like serine threonine-protein kinase LRR receptor kinase SERK2 (EC 2.7.11.1) (BRI1-associated receptor kinase 1 homolog 5) (OsBAK1-5) (Somatic embryogenesis receptor kinase 4) (OsSERK4),Expressed protein (Os03g0703200 protein) Q6K4T4,Q53RI3 SERK4_ORYSJ,Q53RI3_ORYSJ SERK4 Os02g0283800 LOC_Os02g18320 OsJ_06271 OSJNBa0018M09.11,Os03g0703200 OSNPB_030703200 FUNCTION: May be involved in the regulation of plant growth through the brassinosteroid (BR) signaling pathway. {ECO:0000269|PubMed:19754838}. ENOG411DYDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease Amino acid permease family protein, putative, expressed (Os03g0374900 protein) (Os03g0375100 protein) (Putative amino acid permease),Expressed protein (Os03g0375300 protein),Os03g0375300 protein Q7Y166,Q10KQ0,A0A0P0VYU5 Q7Y166_ORYSJ,Q10KQ0_ORYSJ,A0A0P0VYU5_ORYSJ Os03g0374900 LOC_Os03g25840 Os03g0375100 OSJNBa0090L05.6 OSNPB_030374900,Os03g0375300 LOC_Os03g25869 OSNPB_030375300,Os03g0375300 OSNPB_030375300 ENOG411DYDR Q940N7 Q940N7_ARATH AT4g05150/C17L7_70 (Octicosapeptide/Phox/Bem1p family protein) 53062 AT4g05150/C17L7_70 (Octicosapeptide/Phox/Bem1p family protein) protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777] locus:2115658; AT4G05150 Octicosapeptide Phox Bem1p Os07g0556300 protein (Fragment) Q0D5J6 Q0D5J6_ORYSJ Os07g0556300 Os07g0556300 OSNPB_070556300 ENOG411DYDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root cap NA NA NA NA NA NA NA ENOG411DYDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminomethyltransferase folate-binding domain NA NA NA NA NA NA NA ENOG411DYDZ YUP8H12.11 A0A1P8AQE7,F4I8P5 A0A1P8AQE7_ARATH,F4I8P5_ARATH ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) 53702,56358 ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) integral component of membrane [GO:0016021] locus:2207170; AT1G05280 Protein of unknown function DUF604 NA NA NA NA NA NA NA ENOG411DYDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transport factor 2 (NTF2) domain NA NA NA NA NA NA NA ENOG411DYDD Q8GUP3,F4JTF2 Q8GUP3_ARATH,F4JTF2_ARATH Transcriptional regulator (Uncharacterized protein At4g31880),Transcriptional regulator 94209,94081 Transcriptional regulator (Uncharacterized protein At4g31880),Transcriptional regulator chloroplast [GO:0009507]; chromatin [GO:0000785]; cytosol [GO:0005829]; nucleus [GO:0005634]; DNA repair [GO:0006281]; microsporogenesis [GO:0009556]; mitotic sister chromatid cohesion [GO:0007064] locus:2116787; AT4G31880 Inherit from KOG: PDS5 regulator of cohesion maintenance homolog OSJNBa0029H02.25 protein (Os04g0501600 protein) (cDNA clone:J013155D11, full insert sequence),Os04g0320000 protein,Os04g0326000 protein,Os04g0501600 protein (Fragment) Q0JBZ3,A0A0N7KIU2,A0A0P0W9E1,A0A0P0WC02 Q0JBZ3_ORYSJ,A0A0N7KIU2_ORYSJ,A0A0P0W9E1_ORYSJ,A0A0P0WC02_ORYSJ Os04g0501600 OSJNBa0029H02.25 Os04g0501600 OSNPB_040501600,Os04g0320000 OSNPB_040320000,Os04g0326000 OSNPB_040326000,Os04g0501600 OSNPB_040501600 ENOG411DYDG ZIF2 P93051,A0A1P8AZ27,A0A1P8AZ00 ERDL7_ARATH,A0A1P8AZ27_ARATH,A0A1P8AZ00_ARATH Sugar transporter ERD6-like 7,Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 49700,38469,41279 Sugar transporter ERD6-like 7,Major facilitator superfamily protein chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; zinc II ion transport [GO:0006829],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2066400; AT2G48020 sugar transporter NA NA NA NA NA NA NA ENOG411DYDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31),Os03g0626000 protein (Fragment) Q75LV6,Q75LV3,A0A0P0W0Z4,A0A0P0W143 Q75LV6_ORYSJ,Q75LV3_ORYSJ,A0A0P0W0Z4_ORYSJ,A0A0P0W143_ORYSJ Os03g0625800 LOC_Os03g42760 Os03g0625800 Os03g42760 OsJ_11792 OSNPB_030625800,LOC_Os03g42790 Os03g0626100 Os03g42790 OsJ_11795 OSNPB_030626100,Os03g0625933 OSNPB_030625933,Os03g0626000 OSNPB_030626000 ENOG411DYDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os08g0162400 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:001-115-G04, full insert sequence) (cDNA clone:J033094D12, full insert sequence) Q84SC7 Q84SC7_ORYSJ P0577B11.136 OJ9990_A01.102 Os08g0162400 OsJ_26141 OSNPB_080162400 ENOG411DYDC Q8W4C5,Q8LCW1,Q9C6Y5,F4I722,F4JIY9 Q8W4C5_ARATH,Q8LCW1_ARATH,Q9C6Y5_ARATH,F4I722_ARATH,F4JIY9_ARATH Eukaryotic aspartyl protease family protein (Nucellin-like protein),Eukaryotic aspartyl protease family protein (Nucellin, putative),Eukaryotic aspartyl protease family protein 51239,47446,43960,47678,44592 Eukaryotic aspartyl protease family protein (Nucellin-like protein),Eukaryotic aspartyl protease family protein (Nucellin, putative),Eukaryotic aspartyl protease family protein integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190],aspartic-type endopeptidase activity [GO:0004190] locus:2204725;,locus:2119231;,locus:2205861; AT1G77480,AT4G33490,AT1G44130 aspartic proteinase Eukaryotic aspartyl protease family protein, expressed (Os12g0177500 protein) (cDNA clone:J013000A17, full insert sequence) Q2QWY7 Q2QWY7_ORYSJ Os12g0177500 LOC_Os12g07780 Os12g0177500 OSNPB_120177500 ENOG411DYDB MGH6.15 Q56W79,Q9LSH9 Q56W79_ARATH,Q9LSH9_ARATH AT3G13000 protein (Uncharacterized protein At3g13000),At3g13000 (Uncharacterized protein At3g13000) 66014,62628 AT3G13000 protein (Uncharacterized protein At3g13000),At3g13000 (Uncharacterized protein At3g13000) vacuole [GO:0005773]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2089220; AT3G13000 Protein of unknown function DUF547 Os06g0704100 protein (Ternary complex factor MIP1-like) (cDNA clone:J033143F04, full insert sequence) Q5Z809 Q5Z809_ORYSJ Os06g0704100 OJ1215_E11.21 OsJ_22557 OSNPB_060704100 ENOG411DYDM RH43,RH35 Q9SZB4,Q9LU46 RH43_ARATH,RH35_ARATH Putative DEAD-box ATP-dependent RNA helicase 43 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 35 (EC 3.6.4.13) 3.6.4.13 60258,65806 Putative DEAD-box ATP-dependent RNA helicase 43 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 35 (EC 3.6.4.13) catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501],catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA secondary structure unwinding [GO:0010501] locus:2119176;,locus:2176192; AT4G33370,AT5G51280 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 35B (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 35A (EC 3.6.4.13),Os02g0150100 protein (Fragment) Q5Z6G5,Q0E3X4,A0A0P0VEV8,A0A0P0VET1 RH35B_ORYSJ,RH35A_ORYSJ,A0A0P0VEV8_ORYSJ,A0A0P0VET1_ORYSJ Os06g0697200 LOC_Os06g48210 OsJ_22496 P0028E05.25,Os02g0150100 LOC_Os02g05660 OSJNBa0050G13.7,Os02g0150100 OSNPB_020150100 ENOG411DYDN CYP76C7 F4JD30 F4JD30_ARATH Cytochrome P450, family 76, subfamily C, polypeptide 7 44893 Cytochrome P450, family 76, subfamily C, polypeptide 7 heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] AT3G61040 Cytochrome P450 Os09g0447300 protein (Putative Cyt-P450 monooxygenase) (cDNA, clone: J100068A12, full insert sequence) Q67UD7 Q67UD7_ORYSJ Os09g0447300 OJ1596_C06.19 OsJ_29566 OSNPB_090447300 P0047B10.1 ENOG411DYDI PCMP-E39 O82363 PP203_ARATH Pentatricopeptide repeat-containing protein At2g46050, mitochondrial 66335 Pentatricopeptide repeat-containing protein At2g46050, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2062939; AT2G46050 Pentatricopeptide repeat-containing protein Os07g0259400 protein Q0D7D9 Q0D7D9_ORYSJ Os07g0259400 Os07g0259400 OSNPB_070259400 ENOG411DYDH Q5XVC2 Q5XVC2_ARATH Pseudouridine synthase family protein 79402 Pseudouridine synthase family protein nucleus [GO:0005634]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522] locus:2114870; AT3G04820 synthase Os05g0509300 protein (cDNA clone:J013065A19, full insert sequence),Os01g0773000 protein Q6L4W6,A0A0P0V8Q8 Q6L4W6_ORYSJ,A0A0P0V8Q8_ORYSJ Os05g0509300 OSJNBb0108E17.14 OSNPB_050509300,Os01g0773000 OSNPB_010773000 ENOG411DYDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0611100 protein (Fragment) A0A0P0YCZ3 A0A0P0YCZ3_ORYSJ Os12g0611100 OSNPB_120611100 ENOG411DYDJ NAC036 F4IME8 F4IME8_ARATH NAC domain containing protein 36 same as smb-3 single mutant 31818 NAC domain containing protein 36 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; inflorescence morphogenesis [GO:0048281]; leaf morphogenesis [GO:0009965]; negative regulation of cell size [GO:0045792]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2827676; AT2G17040 nac domain NAC domain-containing protein 22 (ONAC022) Q10S65 NAC22_ORYSJ NAC022 Os03g0133000 LOC_Os03g04070 OsJ_09306 FUNCTION: Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. MISCELLANEOUS: Plants overexpressing NAC022 exhibit enhanced tolerance to drought stress and salt stress. {ECO:0000269|PubMed:26834774}. ENOG411DYD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA subtilisin-like Os06g0624100 protein A0A0P0WYV3 A0A0P0WYV3_ORYSJ Os06g0624100 OSNPB_060624100 ENOG411DYD4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin 5'-adenylylsulfate reductase-like 6 (Adenosine 5'-phosphosulfate reductase-like 6) (APR-like 6) (OsAPRL6) Q2QP53 APRL6_ORYSJ APRL6 Os12g0541600 LOC_Os12g35640 ENOG411DYD7 LOG7 Q8GW29 LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 (EC 3.2.2.n1) (Protein LONELY GUY 7) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions; due to the redundancy with other LOG proteins. {ECO:0000269|PubMed:19837870}. FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000269|PubMed:19837870}. ARA:AT5G06300-MONOMER; 3.2.2.n1 23889 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 (EC 3.2.2.n1) (Protein LONELY GUY 7) cytosol [GO:0005829]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691] TISSUE SPECIFICITY: Expressed in roots and shoots. Detected in the epidermis of the root elongation zone, cotyledon and leaves, in trichomes and pollen. {ECO:0000269|PubMed:19837870}. locus:2164280; AT5G06300 Cytokinin riboside 5'-monophosphate phosphoribohydrolase NA NA NA NA NA NA NA ENOG411DYD6 LAG2 Q9LJK3 LAG12_ARATH LAG1 longevity assurance homolog 2 (LAG1 homolog 2) FUNCTION: Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis. Could salvage the transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi apparatus in ceramides-depleted cells after SAM exposure (By similarity). {ECO:0000250}. 34699 LAG1 longevity assurance homolog 2 (LAG1 homolog 2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; sphingosine N-acyltransferase activity [GO:0050291]; ceramide biosynthetic process [GO:0046513]; long-chain fatty acid biosynthetic process [GO:0042759]; response to molecule of fungal origin [GO:0002238] locus:2094133; AT3G19260 Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis. Could salvage the transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi apparatus in ceramides-depleted cells after SAM exposure ASC1-like protein 3 (Alternaria stem canker resistance-like protein 3) Q84QC0 ASCL3_ORYSJ Os03g0264000 LOC_Os03g15750 OJ1012B02.1 OsJ_10237 FUNCTION: Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis. Could salvage the transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi apparatus in ceramides-depleted cells after SAM exposure (By similarity). {ECO:0000250}. ENOG411DYD1 FUT1 Q9SWH5 FUT1_ARATH Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.-) (Xyloglucan alpha-(1,2)-fucosyltransferase) (AtFUT1) Low fucosylated xyloglucan levels; No other phenotypes detected-W. Reiter-2002 FUNCTION: Involved in cell wall biosynthesis. Is both necessary and sufficient for the addition of the terminal fucosyl residue on xyloglucan side chains, but is not involved in the fucosylation of other cell wall components (PubMed:10373113, PubMed:11743104, PubMed:11854459, PubMed:14730072). Associates with other xyloglucan-synthesizing enzymes to form multiprotein complexes for xyloglucan synthesis in the Golgi (PubMed:25392066). {ECO:0000269|PubMed:10373113, ECO:0000269|PubMed:11743104, ECO:0000269|PubMed:11854459, ECO:0000269|PubMed:14730072, ECO:0000269|PubMed:25392066}. ARA:AT2G03220-MONOMER;MetaCyc:AT2G03220-MONOMER; 2.4.1.- 63452 Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.-) (Xyloglucan alpha-(1,2)-fucosyltransferase) (AtFUT1) Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; protein homodimerization activity [GO:0042803]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and seedlings. {ECO:0000269|PubMed:11743104}. locus:2056886; AT2G03220 galactoside 2-alpha-L-fucosyltransferase-like Os02g0764400 protein (Fragment) Q0DXA9 Q0DXA9_ORYSJ Os02g0764400 Os02g0764400 OSNPB_020764400 ENOG411DYD0 UBP1B Q9LQI9,B3H4Q3 UBP1B_ARATH,B3H4Q3_ARATH Oligouridylate-binding protein 1B (AtUBP1b) (Polyuridylate-binding protein UBP1B) (Poly(U)-binding protein UBP1B),Oligouridylate binding protein 1B FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. Functions to facilitate the nuclear maturation of plant pre-mRNAs (By similarity). {ECO:0000250}. 46049,45733 Oligouridylate-binding protein 1B (AtUBP1b) (Polyuridylate-binding protein UBP1B) (Poly(U)-binding protein UBP1B),Oligouridylate binding protein 1B nucleus [GO:0005634]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397],RNA binding [GO:0003723] locus:2018794; AT1G17370 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DYD3 Q9LFC7 Q9LFC7_ARATH Concanavalin A-like lectin family protein (Lectin-like protein) 38853 Concanavalin A-like lectin family protein (Lectin-like protein) integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246] locus:2150114; AT5G01090 L-type lectin-domain containing receptor kinase NA NA NA NA NA NA NA ENOG411DYD2 Q93Z68,F4J8B6 Q93Z68_ARATH,F4J8B6_ARATH AT3g59470/T16L24_20 (Far-red impaired responsive (FAR1) family protein),Far-red impaired responsive (FAR1) family protein 28864,30112 AT3g59470/T16L24_20 (Far-red impaired responsive (FAR1) family protein),Far-red impaired responsive (FAR1) family protein nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585],regulation of transcription, DNA-templated [GO:0006355] locus:2097543; AT3G59470 far-red impaired responsive family protein NA NA NA NA NA NA NA ENOG411DYD9 PER24 Q9ZV04 PER24_ARATH Peroxidase 24 (Atperox P24) (EC 1.11.1.7) (ATP47) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G39040-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 38237 Peroxidase 24 (Atperox P24) (EC 1.11.1.7) (ATP47) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2064950; AT2G39040 Peroxidase NA NA NA NA NA NA NA ENOG411DYD8 A0A1P8ATQ7,F4HTN4 A0A1P8ATQ7_ARATH,F4HTN4_ARATH Zinc finger CONSTANS-like protein (DUF3537) 48893,51257 Zinc finger CONSTANS-like protein (DUF3537) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; nucleus [GO:0005634] locus:2008828; AT1G67570 Protein of unknown function (DUF3537) Os08g0128200 protein (cDNA clone:J013095K19, full insert sequence) Q6ZK43 Q6ZK43_ORYSJ Os08g0128200 Os08g0128200 OJ1163_G08.36 OSNPB_080128200 ENOG411E0M2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411ECJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTP cyclohydrolase II NA NA NA NA NA NA NA ENOG411ECG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os04g0658400 protein (Fragment) A0A0P0WFV4 A0A0P0WFV4_ORYSJ Os04g0658400 OSNPB_040658400 ENOG411ECG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os05g0434000 protein A0A0P0WMP7 A0A0P0WMP7_ORYSJ Os05g0434000 OSNPB_050434000 ENOG411ECG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411ECG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411ECG7 F4JPK8,A0A1P8B3B9 AATPE_ARATH,A0A1P8B3B9_ARATH AAA-ATPase At4g30250 (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein 3.6.1.3 59511,59771 AAA-ATPase At4g30250 (EC 3.6.1.3),P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; ATPase activity [GO:0016887],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2128916; AT4G30250 Protein of unknown function (DUF815) NA NA NA NA NA NA NA ENOG411ECGK MRG7.18 Q9FK49 Q9FK49_ARATH Beta-1,3-glucanase-like protein (O-Glycosyl hydrolases family 17 protein) ARA:AT5G18220-MONOMER; 53866 Beta-1,3-glucanase-like protein (O-Glycosyl hydrolases family 17 protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2172379; AT5G18220 X8 domain NA NA NA NA NA NA NA ENOG411ECGJ PUP16,PUP15 O04508,Q9LQZ0 PUP16_ARATH,PUP15_ARATH Probable purine permease 16 (AtPUP16),Putative purine permease 15 (AtPUP15) 43225,43940 Probable purine permease 16 (AtPUP16),Putative purine permease 15 (AtPUP15) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] locus:2024382; AT1G09860,AT1G75470 Triose-phosphate Transporter family NA NA NA NA NA NA NA ENOG411ECGX Q9SZA2,Q9LS58,Q9LSV6,F4IAV6 FB225_ARATH,FB158_ARATH,FB186_ARATH,F4IAV6_ARATH Putative F-box protein At4g09870,F-box protein At3g18320,Putative F-box protein At3g25460,F-box associated ubiquitination effector family protein 39740,35835,41992,26797 Putative F-box protein At4g09870,F-box protein At3g18320,Putative F-box protein At3g25460,F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2118485;,locus:2094453;,locus:2825970; AT4G09870,AT3G18320,AT3G25460,AT1G25141 F-box associated NA NA NA NA NA NA NA ENOG411ECGQ MLP168,MLP280 Q9C7I3,Q941R5,F4K5S5 ML168_ARATH,Q941R5_ARATH,F4K5S5_ARATH MLP-like protein 168,Major latex-like protein (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein 17413,18565,18883 MLP-like protein 168,Major latex-like protein (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2206702;,locus:2143804;,locus:2143809; AT1G35310,AT5G28000,AT5G28010 Bet v I allergen family protein NA NA NA NA NA NA NA ENOG411ECGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411ECGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bestrophin RFP-TM chloride channel NA NA NA NA NA NA NA ENOG411ECGR DOF1.3 Q9LQX4 DOF13_ARATH Dof zinc finger protein DOF1.3 (AtDOF1.3) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 41402 Dof zinc finger protein DOF1.3 (AtDOF1.3) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] AT1G26790 Dof-type zinc finger domain-containing protein NA NA NA NA NA NA NA ENOG411ECGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDA1/CD39 (nucleoside phosphatase) family NA NA NA NA NA NA NA ENOG411ECGW GULLO1,GULLO4,GULLO6,GULLO5,GULLO7,GULLO2 Q9C614,Q9FM82,O81032,O81030,Q9FM84,Q6NQ66 GGLO1_ARATH,GGLO4_ARATH,GGLO6_ARATH,GGLO5_ARATH,GGLO7_ARATH,GGLO2_ARATH Probable L-gulonolactone oxidase 1 (AtGulLO1) (EC 1.1.3.8),Probable L-gulonolactone oxidase 4 (AtGulLO4) (EC 1.1.3.8),Probable L-gulonolactone oxidase 6 (AtGulLO6) (EC 1.1.3.8),L-gulonolactone oxidase 5 (AtGulLO5) (EC 1.1.3.8),Probable truncated L-gulonolactone oxidase 7, mitochondrial (AtGulLO7) (EC 1.1.3.8),L-gulonolactone oxidase 2 (AtGulLO2) (EC 1.1.3.8) FUNCTION: May be involved in the biosynthesis of ascorbic acid. {ECO:0000305|PubMed:20622436}.,FUNCTION: Catalyzes the oxidation of L-gulono-1,4-lactone to ascorbic acid (PubMed:20622436). L-gulono-1,4-lactone is oxidized to hydrogen peroxide and L-xylo-hexulonolactone which spontaneously isomerizes to L-ascorbate (By similarity). {ECO:0000250|UniProtKB:P58710, ECO:0000269|PubMed:20622436}. PATHWAY: Cofactor biosynthesis; L-ascorbate biosynthesis. {ECO:0000305|PubMed:20622436}.,PATHWAY: Cofactor biosynthesis; L-ascorbate biosynthesis. {ECO:0000269|PubMed:20622436}. 1.1.3.37;1.1.3.8; 1.1.3.8 65947,64124,66282,64890,28680,64970 Probable L-gulonolactone oxidase 1 (AtGulLO1) (EC 1.1.3.8),Probable L-gulonolactone oxidase 4 (AtGulLO4) (EC 1.1.3.8),Probable L-gulonolactone oxidase 6 (AtGulLO6) (EC 1.1.3.8),L-gulonolactone oxidase 5 (AtGulLO5) (EC 1.1.3.8),Probable truncated L-gulonolactone oxidase 7, mitochondrial (AtGulLO7) (EC 1.1.3.8),L-gulonolactone oxidase 2 (AtGulLO2) (EC 1.1.3.8) membrane [GO:0016020]; D-arabinono-1,4-lactone oxidase activity [GO:0003885]; flavin adenine dinucleotide binding [GO:0050660]; L-gulonolactone oxidase activity [GO:0050105]; L-ascorbic acid biosynthetic process [GO:0019853],cell wall [GO:0005618]; membrane [GO:0016020]; D-arabinono-1,4-lactone oxidase activity [GO:0003885]; flavin adenine dinucleotide binding [GO:0050660]; L-gulonolactone oxidase activity [GO:0050105]; L-ascorbic acid biosynthetic process [GO:0019853],membrane [GO:0016020]; mitochondrion [GO:0005739]; D-arabinono-1,4-lactone oxidase activity [GO:0003885]; L-gulonolactone oxidase activity [GO:0050105]; L-ascorbic acid biosynthetic process [GO:0019853] locus:2825463;,locus:2161033;,locus:2044350;,locus:2044330;,locus:2161103;,locus:2044340; AT1G32300,AT5G56490,AT2G46760,AT2G46740,AT5G56470,AT2G46750 D-arabinono-14-lactone oxidase NA NA NA NA NA NA NA ENOG411ECKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Argonaute protein group source Os01g0275500 protein,Os01g0275600 protein (Fragment) A0A0P0V123,A0A0P0V146 A0A0P0V123_ORYSJ,A0A0P0V146_ORYSJ Os01g0275500 OSNPB_010275500,Os01g0275600 OSNPB_010275600 ENOG411ECKP F26K9_140 Q9LZJ4 Q9LZJ4_ARATH Beta-D-glucan exohydrolase-like protein (Glycosyl hydrolase family protein) ARA:AT3G62710-MONOMER; 70843 Beta-D-glucan exohydrolase-like protein (Glycosyl hydrolase family protein) plasma membrane [GO:0005886]; beta-glucosidase activity [GO:0008422]; xylan 1,4-beta-xylosidase activity [GO:0009044]; glucan catabolic process [GO:0009251] locus:2081605; AT3G62710 glycosyl hydrolase family 3 protein NA NA NA NA NA NA NA ENOG411ECKR MCO15.13 Q0V7P5,A0A1P8B420,F4K3D8,F4JVS0 Q0V7P5_ARATH,A0A1P8B420_ARATH,F4K3D8_ARATH,F4JVS0_ARATH At5g55180 (O-Glycosyl hydrolases family 17 protein),O-Glycosyl hydrolases family 17 protein 49362,49785,50099,49346 At5g55180 (O-Glycosyl hydrolases family 17 protein),O-Glycosyl hydrolases family 17 protein hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2161710;,locus:2116327; AT5G55180,AT4G26830 X8 domain NA NA NA NA NA NA NA ENOG411ECKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dicer-like endonuclease involved in cleaving double- stranded RNA in the RNA interference (RNAi) pathway. Produces 21 to 25 bp dsRNAs (siRNAs) which target the selective destruction of homologous RNAs leading to sequence-specific suppression of gene expression called post-transcriptional gene silencing (PTGS). Part of a broad host defense response against viral infection and transposons NA NA NA NA NA NA NA ENOG411ECKD Q9LTP6 EDL13_ARATH Putative sugar transporter ERD6-like 13 FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 53051 Putative sugar transporter ERD6-like 13 integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] locus:2092379; AT3G20460 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411ECKF Q9XI10,Q9XI11 Q9XI10_ARATH,Q9XI11_ARATH DPP6 N-terminal domain-like protein (F8K7.10 protein) (Uncharacterized protein At1g21680),DPP6 amino-terminal domain protein (F8K7.9) (Uncharacterized protein At1g21670) 78442,77289 DPP6 N-terminal domain-like protein (F8K7.10 protein) (Uncharacterized protein At1g21680),DPP6 amino-terminal domain protein (F8K7.9) (Uncharacterized protein At1g21670) plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773],cell wall [GO:0005618]; plant-type cell wall [GO:0009505] locus:2036916;,locus:2036982; AT1G21680,AT1G21670 Dipeptidyl peptidase IV (DPP IV) N-terminal region NA NA NA NA NA NA NA ENOG411ECKC F13I12.40 Q9FIL8,Q9SD74 Q9FIL8_ARATH,Q9SD74_ARATH Emb|CAB61945.1 (Uncharacterized protein At5g58930),DUF740 family protein, putative (DUF740) (Predicted protein) 58372,61341 Emb|CAB61945.1 (Uncharacterized protein At5g58930),DUF740 family protein, putative (DUF740) (Predicted protein) plasma membrane [GO:0005886]; tissue development [GO:0009888] locus:2154548;,locus:2075606; AT5G58930,AT3G46990 Protein of unknown function (DUF740) NA NA NA NA NA NA NA ENOG411ECKB YUP8H12.6 A0A1P8AQX3,F4I8Q1 A0A1P8AQX3_ARATH,F4I8Q1_ARATH Myosin heavy chain, embryonic smooth protein 76499,89451 Myosin heavy chain, embryonic smooth protein integral component of membrane [GO:0016021] locus:2207230; AT1G05320 NA NA NA NA NA NA NA NA ENOG411EKHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EINB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKHF Q8LDK5 Q8LDK5_ARATH At5g27820 (Ribosomal L18p/L5e family protein) 12739 At5g27820 (Ribosomal L18p/L5e family protein) ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2180310; AT5G27820 ribosomal protein L18 NA NA NA NA NA NA NA ENOG411EFY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EKHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L18p/L5e family NA NA NA NA NA NA NA ENOG411EHVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0461400 protein Q0JCM7,A0A0P0WBA7 Q0JCM7_ORYSJ,A0A0P0WBA7_ORYSJ Os04g0461400 Os04g0461400 OSNPB_040461400,Os04g0461400 OSNPB_040461400 ENOG411EFYY SMR2 Q9SGE2 SMR2_ARATH Cyclin-dependent protein kinase inhibitor SMR2 (Protein SIAMESE-RELATED 2) DISRUPTION PHENOTYPE: Larger leaves with an increased cell number. {ECO:0000269|PubMed:26546445}. FUNCTION: Cyclin-dependent protein kinase (CDK) inhibitor that restricts cell proliferation and cooperates with SIM and SMR1 to promote endoreplication during leaf development (PubMed:26546445). {ECO:0000269|PubMed:26546445}. 12910 Cyclin-dependent protein kinase inhibitor SMR2 (Protein SIAMESE-RELATED 2) nucleus [GO:0005634]; protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] TISSUE SPECIFICITY: Expressed at low levels in roots and stems (PubMed:17098811). Expressed in the root vascular tissue (PubMed:24399300). {ECO:0000269|PubMed:17098811, ECO:0000269|PubMed:24399300}. locus:2199998; AT1G08180 NA NA NA NA NA NA NA NA ENOG411EHVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411EHVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GMC oxidoreductase NA NA NA NA NA NA NA ENOG411EHVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KDPG and KHG aldolase NA NA NA NA NA NA NA ENOG411EHV4 Q6E248 Q6E248_ARATH Putative membrane lipoprotein 7465 Putative membrane lipoprotein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2089658; AT3G18250 NA NA NA NA NA NA NA NA ENOG411EHV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0177966 protein A0A0P0VTU0 A0A0P0VTU0_ORYSJ Os03g0177966 OSNPB_030177966 ENOG411EHV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0600500 protein Q6K5H4 Q6K5H4_ORYSJ Os02g0600500 OJ1791_B03.24 OsJ_07405 OSNPB_020600500 ENOG411EHV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Roadblock/LC7 domain NA NA NA NA NA NA NA ENOG411DT6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0303500 protein,Os06g0114366 protein,Os06g0487700 protein,Os12g0281933 protein,Os06g0681900 protein,Os03g0627100 protein (Fragment) Q657H8,C7J3Y1,A3BBW7,A0A0P0Y933,A0A0P0X070,A0A0N7KHP0 Q657H8_ORYSJ,C7J3Y1_ORYSJ,A3BBW7_ORYSJ,A0A0P0Y933_ORYSJ,A0A0P0X070_ORYSJ,A0A0N7KHP0_ORYSJ Os01g0303500 B1146F03.37 OSNPB_010303500 P0475H04.4,Os06g0114366 Os06g0114366 OSNPB_060114366,Os06g0487700 OsJ_21399 OSNPB_060487700,Os12g0281933 OSNPB_120281933,Os06g0681900 OSNPB_060681900,Os03g0627100 OSNPB_030627100 ENOG411DT6Y VPS35B,VPS35A F4I0P8,Q7X659,A0A1P8AQF4 VP35B_ARATH,VP35A_ARATH,A0A1P8AQF4_ARATH Vacuolar protein sorting-associated protein 35B (Vesicle protein sorting 35B),Vacuolar protein sorting-associated protein 35A (Protein ZIG SUPPRESSOR 3) (Vesicle protein sorting 35A),VPS35 homolog B Reduced but still significant response to gravity. mag1 represses the phenotype of zig-1.Similar phenotype to mag-1 single mutant.,Reduced response to gravity but not as strong as zig-1 along. Zip3 suppresses zig-1 phenotype. FUNCTION: Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. Also involved in the efficient sorting of seed storage proteins globulin 12S and albumin 2S. The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane. {ECO:0000269|PubMed:18222962}.,FUNCTION: Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. Also involved in the efficient sorting of seed storage proteins (Probable). Binds alone to endosomal membranes and is required for recruitment of VPS26 and VPS29 to membrane (PubMed:23362252). The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane (PubMed:20086190). {ECO:0000269|PubMed:20086190, ECO:0000269|PubMed:23362252, ECO:0000305|PubMed:23362252}. 89445,89493,62611 Vacuolar protein sorting-associated protein 35B (Vesicle protein sorting 35B),Vacuolar protein sorting-associated protein 35A (Protein ZIG SUPPRESSOR 3) (Vesicle protein sorting 35A),VPS35 homolog B cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; retrograde transport, endosome to Golgi [GO:0042147],cytosol [GO:0005829]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; retrograde transport, endosome to Golgi [GO:0042147],cytosol [GO:0005829]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; retrograde transport, endosome to Golgi [GO:0042147] TISSUE SPECIFICITY: Expressed in siliques and maturing seeds (at protein level). {ECO:0000269|PubMed:18222962}. locus:2204390;,locus:2827896; AT1G75850,AT2G17790 Vacuolar protein sorting-associated protein Os03g0801600 protein (Fragment) A0A0P0W506,A0A0P0W4D5 A0A0P0W506_ORYSJ,A0A0P0W4D5_ORYSJ Os03g0801600 OSNPB_030801600 ENOG411EIN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DT68 F4IAE9 Y1591_ARATH ATPase family AAA domain-containing protein At1g05910 133784 ATPase family AAA domain-containing protein At1g05910 nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; DNA demethylation [GO:0080111]; negative regulation of chromatin silencing [GO:0031936]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944] locus:2198748; AT1G05910 bromodomain protein Bromodomain protein 103-like (Os09g0515100 protein),Os09g0515100 protein (Fragment) Q69IM3,A0A0P0XP34 Q69IM3_ORYSJ,A0A0P0XP34_ORYSJ Os09g0515100 OSNPB_090515100 P0450E05.23,Os09g0515100 OSNPB_090515100 ENOG411DT69 CLPX2 F4K7F6,A0A1R7T3E8,A0A1R7T3E9,A0A1P8BHS9 CLPX2_ARATH,A0A1R7T3E8_ARATH,A0A1R7T3E9_ARATH,A0A1P8BHS9_ARATH CLP protease regulatory subunit CLPX2, mitochondrial,ATP-dependent Clp protease FUNCTION: ATP-dependent specificity component of the mitochondrial Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. {ECO:0000250|UniProtKB:B1J693}. 66390,65450,51356,66360 CLP protease regulatory subunit CLPX2, mitochondrial,ATP-dependent Clp protease mitochondrial matrix [GO:0005759]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; unfolded protein binding [GO:0051082]; protein catabolic process [GO:0030163]; protein folding [GO:0006457]; proteolysis [GO:0006508],ATP binding [GO:0005524]; peptidase activity [GO:0008233]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2155446; AT5G49840 ATP-dependent Clp protease NA NA NA NA NA NA NA ENOG411DT66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotidyltransferase domain NA NA NA NA NA NA NA ENOG411EKH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PGAM NA NA NA NA NA NA NA ENOG411ECGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411ECGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EEF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Natural resistance-associated macrophage protein NA NA NA NA NA NA NA ENOG411DVZH SGR6 F4IP13,A0A1P8B1Z0,A0A1P8B1Y3 SHGR6_ARATH,A0A1P8B1Z0_ARATH,A0A1P8B1Y3_ARATH Protein SHOOT GRAVITROPISM 6,ARM repeat superfamily protein DISRUPTION PHENOTYPE: Abnormal inflorescence stems gravitropism but normal hypocotyl gravitropism. Impaired flexible and dynamic structure of vacuolar membrane (VMs) leading to altered amyloplast sedimentation. {ECO:0000269|PubMed:24486761, ECO:0000269|PubMed:9210330}. FUNCTION: Involved in inflorescence stems gravitropism, by modulating vacuolar membrane (VMs) dynamics in gravity-sensing cells (e.g. endodermal cells) during the amyloplast sedimentation process. {ECO:0000269|PubMed:24486761, ECO:0000269|PubMed:9210330}. 189423,187855,164592 Protein SHOOT GRAVITROPISM 6,ARM repeat superfamily protein plant-type vacuole membrane [GO:0009705]; amyloplast organization [GO:0009660]; gravitropism [GO:0009630]; negative gravitropism [GO:0009959] TISSUE SPECIFICITY: Expressed in roots (e.g. root cap of primary roots and vascular tissues), hypocotyls, cotyledons (including in guard cells), stems (e.g. epidermis, endodermis, phloem, developing metaxylem and interfascicular cells). {ECO:0000269|PubMed:24486761}. locus:2040585; AT2G36810 Inherit from KOG: HEAT repeat NA NA NA NA NA NA NA ENOG411DVZF Q8L795 Q8L795_ARATH DUF1666 family protein (DUF1666) (Uncharacterized protein At3g20260) 50507 DUF1666 family protein (DUF1666) (Uncharacterized protein At3g20260) cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412] locus:2092314; AT3G20260 Protein of unknown function (DUF1666) Os08g0519600 protein (cDNA clone:001-115-H02, full insert sequence),Os08g0519600 protein (cDNA clone:J023065D24, full insert sequence) Q6ZBK5,B7EKP5 Q6ZBK5_ORYSJ,B7EKP5_ORYSJ P0689E12.24-1 Os08g0519600 OSNPB_080519600,Os08g0519600 OSNPB_080519600 ENOG411DVZG MSH6 O04716,F4JH76 MSH6_ARATH,F4JH76_ARATH DNA mismatch repair protein MSH6 (AtMSH6) (MutS protein homolog 6),MUTS homolog 6 FUNCTION: Component of the post-replicative DNA mismatch repair system (MMR). Forms the heterodimer MutS alpha (MSH2-MSH6 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. MutS alpha recognizes single base mismatches and trinucleotide insertion-deletion loops (IDL) in the DNA. Is involved in a UV-B-induced DNA damage response pathway. {ECO:0000269|PubMed:10852942, ECO:0000269|PubMed:14530450, ECO:0000269|PubMed:21307385}.,FUNCTION: Component of the post-replicative DNA mismatch repair system (MMR). {ECO:0000256|RuleBase:RU003756}. R-ATH-5358565; 146797,146370 DNA mismatch repair protein MSH6 (AtMSH6) (MutS protein homolog 6),MUTS homolog 6 mismatch repair complex [GO:0032300]; nucleus [GO:0005634]; ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA-dependent ATPase activity [GO:0008094]; heteroduplex DNA loop binding [GO:0000404]; maintenance of DNA repeat elements [GO:0043570]; mismatch repair [GO:0006298]; pyrimidine dimer repair [GO:0006290],ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] locus:2132233; AT4G02070 DNA mismatch repair protein Os09g0407600 protein (Fragment) A0A0N7KQS3 A0A0N7KQS3_ORYSJ Os09g0407600 OSNPB_090407600 ENOG411DVZY NRT2.7 Q9LYK2 NRT27_ARATH High affinity nitrate transporter 2.7 (AtNRT2:7) DISRUPTION PHENOTYPE: No visible phenotype during vegetative growth. No effect on root nitrate influx. Decreased nitrate content in mature seeds and delayed germination. {ECO:0000269|PubMed:17540716}. decreased nitrate content in seeds Low nitrate levels in seeds-F. Daniel-Vedele-2007 FUNCTION: Involved in high-affinity nitrate transport. Controls nitrate content in seeds. {ECO:0000269|PubMed:15107992, ECO:0000269|PubMed:17540716}. 52678 High affinity nitrate transporter 2.7 (AtNRT2:7) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706] DEVELOPMENTAL STAGE: Expressed mainly at the end of seed maturation when the tissue is completely dry. {ECO:0000269|PubMed:17540716}. TISSUE SPECIFICITY: Expressed in seeds, leaves and shoots. Lower expression in roots. {ECO:0000269|PubMed:12668777, ECO:0000269|PubMed:17540716}. locus:2222652; AT5G14570 Nitrate transporter NA NA NA NA NA NA NA ENOG411DVZV COL2,CO,COL1 Q96502,Q39057,O50055 COL2_ARATH,CONS_ARATH,COL1_ARATH Zinc finger protein CONSTANS-LIKE 2,Zinc finger protein CONSTANS,Zinc finger protein CONSTANS-LIKE 1 Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type.,Defects in the photoperiod pathway.,Flowering time of mutants at 23°C short days and 27°C in short days is not affected compared to wild type.,Slight increase in delay in flowering under LD conditions compared to co-1 single mutant. Late flowering-G. Coupland-1995 FUNCTION: Putative transcription factor. Does not affect flowering time.,FUNCTION: Transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively). Regulates the expression of NAKR1 by binding to the 5'-TGTG(N2-3)ATG-3' motif (PubMed:27255839). {ECO:0000269|PubMed:10834834, ECO:0000269|PubMed:11323677, ECO:0000269|PubMed:21950734, ECO:0000269|PubMed:27255839}.,FUNCTION: Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. MISCELLANEOUS: The GIGANTEA-CONSTANS-FLOWER LOCUS T (GI-CO-FT) pathway to control photoperiodic flowering under LD is conserved between Arabidopsis and rice, but the regulation of the downstream gene by the upstream regulatory gene is reversed in the two species. In Arabidopsis, GI acts as an activator of CO, which in turn activates the floral activator FT under LD conditions. In rice, GI activates HD1/CO in a similar manner to that in Arabidopsis. However, under LD conditions, HD1 suppresses HD3A/FT expression, causing the suppression of flowering. 38524,41986,39491 Zinc finger protein CONSTANS-LIKE 2,Zinc finger protein CONSTANS,Zinc finger protein CONSTANS-LIKE 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; chloroplast organization [GO:0009658]; regulation of flower development [GO:0009909]; response to light stimulus [GO:0009416]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; far-red light signaling pathway [GO:0010018]; flower development [GO:0009908]; regulation of flower development [GO:0009909]; response to far red light [GO:0010218]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of flower development [GO:0009909]; response to light stimulus [GO:0009416]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed throughout development. TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.,TISSUE SPECIFICITY: Expressed in leaves, shoots and shoot apical meristem. Detected in the vascular tissue of the hypocotyl, the cotyledons and the leaves. Restricted to the protoxylem and phloem in young inflorescence stems and to the phloem only in older inflorescences. Also detected in the vascular tissue of the root. {ECO:0000269|PubMed:15229176}.,TISSUE SPECIFICITY: Highly expressed in leaves and at lower levels in stems, flowers and siliques. Not detected in roots. locus:2074587;,locus:2143206;,locus:2143221; AT3G02380,AT5G15840,AT5G15850 Zinc finger protein Zinc finger protein HD1 (Protein CONSTANS-like) (Protein HEADING DATE 1) (OsHd1) (Protein PHOTOPERIOD SENSITIVITY 1) Q9FDX8 HD1_ORYSJ HD1 SE1 Os06g0275000 LOC_Os06g16370 P0038C05.23 P0676F10.34 FUNCTION: Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions. {ECO:0000269|PubMed:12700762}. MISCELLANEOUS: The GIGANTEA-CONSTANS-FLOWER LOCUS T (GI-CO-FT) pathway to control photoperiodic flowering under LD is conserved between Arabidopsis and rice, but the regulation of the downstream gene by the upstream regulatory gene is reversed in the two species. In Arabidopsis, GI acts as an activator of CO, which in turn activates the floral activator FT under LD conditions. In rice, GI activates HD1/CO in a similar manner to that in Arabidopsis. However, under LD conditions, HD1 suppresses HD3A/FT expression, causing the suppression of flowering. ENOG411DVZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Calmodulin-like protein 4,Os03g0743500 protein (Fragment) Q84MN0,A0A0P0W3F1 CML4_ORYSJ,A0A0P0W3F1_ORYSJ CML4 Os03g0743500 LOC_Os03g53200 OsJ_12528 OSJNBb0036F07.4,Os03g0743500 OSNPB_030743500 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411DVZS TGA9 Q93XM6 TGA9_ARATH Transcription factor TGA9 (Protein TGACG (TGA) motif-binding protein 9) (bZIP transcription factor 21) (AtbZIP21) DISRUPTION PHENOTYPE: In the double mutant tga9 tga10, reduced male fertility due to defects in male gametogenesis, with early steps in anther development blocked in adaxial lobes and later steps affected in abaxial lobes. Microspore development in abaxial anther lobes leads to the production of inviable pollen grains contained within nondehiscent anthers. In addition, multiple defects in the anther dehiscence program are observed, including abnormal stability and lignification of the middle layer and defects in septum and stomium function. Reduced SPL levels in anthers (PubMed:20805327). Increased sensitivity to flg22 treatment associated with a lack of chloroplastic H(2)O(2)-responsive genes; this phenotype is enhanced in the double mutant tga9 tga10 (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. FUNCTION: Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. 53514 Transcription factor TGA9 (Protein TGACG (TGA) motif-binding protein 9) (bZIP transcription factor 21) (AtbZIP21) nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; hydrogen peroxide mediated signaling pathway [GO:0071588]; response to molecule of bacterial origin [GO:0002237]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}. TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}. locus:2199968; AT1G08320 Transcription factor Transcription factor TGAL4 (bZIP transcription factor 79) (OsbZIP79),Transcription factor TGAL11 (bZIP transcription factor 83) (OsbZIP83) Q53Q70,Q2QXL0 TGAL4_ORYSJ,TGL11_ORYSJ TGAL4 Os11g0152700 LOC_Os11g05480,TGAL11 Os12g0152900 LOC_Os12g05680 OsJ_35251 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411ECGN WVD2 Q84ZT9,A0A1P8BFP4 WVD2_ARATH,A0A1P8BFP4_ARATH Protein WAVE-DAMPENED 2 (AtWVD2),TPX2 (Targeting protein for Xklp2) protein family Inhibition of cell elongation right-handed root twisting left-handed leaf petiole twisting suppression of root-waving reduced trichome branching perturbed microtubule organization such as increased longitudinal and oblique positions in root caps. FUNCTION: Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. Able to bundle microtubules in vitro. Modulates both rotational polarity and anisotropic cell expansion during organ growth. Promotes clockwise root and etiolated hypocotyls coiling, clockwise leaf curling, but left-handed petiole twisting. {ECO:0000269|PubMed:12586874, ECO:0000269|PubMed:17319849}. 23341,22898 Protein WAVE-DAMPENED 2 (AtWVD2),TPX2 (Targeting protein for Xklp2) protein family cortical microtubule [GO:0055028]; establishment or maintenance of cell polarity [GO:0007163]; microtubule bundle formation [GO:0001578]; microtubule cytoskeleton organization [GO:0000226]; multidimensional cell growth [GO:0009825]; trichome branching [GO:0010091] TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, hypocotyls, roots, leaves, flowers, inflorescence stems and siliques. {ECO:0000269|PubMed:12586874}. locus:504955059; AT5G28646 Targeting protein for Xklp2 (TPX2) NA NA NA NA NA NA NA ENOG411DVZ8 Q94K68,A0A1R7T377 Q94K68_ARATH,A0A1R7T377_ARATH DUF1995 domain protein, putative (DUF1995) (Uncharacterized protein At5g27560),DUF1995 domain protein, putative (DUF1995) 38046,37834 DUF1995 domain protein, putative (DUF1995) (Uncharacterized protein At5g27560),DUF1995 domain protein, putative (DUF1995) chloroplast [GO:0009507] locus:2143626; AT5G27560 Domain of unknown function (DUF1995) NA NA NA NA NA NA NA ENOG411DVZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase UDP-glucose:2-hydroxyflavanone C-glucosyltransferase (OsCGT) (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) Q5VMI0,Q5VMG8 CGT_ORYSJ,Q5VMG8_ORYSJ CGT Os06g0288300 LOC_Os06g18010 B1197G05.8 b29O05.13 OsJ_21017 P0649C11.32,Os06g0289200 Os06g0289200 B1197G05.29 OSNPB_060289200 FUNCTION: UDP-glucose-dependent glucosyltransferase catalyzing the c-glucosylation of 2-hydroxyflavanones. {ECO:0000250|UniProtKB:C3W7B0}. ENOG411DVZ0 RH13 Q93Y39,A0A178VJW0 RH13_ARATH,A0A178VJW0_ARATH DEAD-box ATP-dependent RNA helicase 13 (EC 3.6.4.13),P-loop containing nucleoside triphosphate hydrolases superfamily protein 3.6.4.13 93986,94057 DEAD-box ATP-dependent RNA helicase 13 (EC 3.6.4.13),P-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; nucleic acid binding [GO:0003676] locus:2086775; AT3G16840 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 13 (EC 3.6.4.13),Os04g0510400 protein (Fragment) A3AVH5,A0A0P0WCJ3 RH13_ORYSJ,A0A0P0WCJ3_ORYSJ Os04g0510400 LOC_Os04g43140 OsJ_014797 OSJNBb0065L13.12,Os04g0510400 OSNPB_040510400 ENOG411DVZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C NA NA NA NA NA NA NA ENOG411EEF2 EXPB1,EXPB3 Q9SKU2,Q9M0I2,A0A1P8B038,A0A1P8B980,A0A1P8B992,A8MSF9 EXPB1_ARATH,EXPB3_ARATH,A0A1P8B038_ARATH,A0A1P8B980_ARATH,A0A1P8B992_ARATH,A8MSF9_ARATH Expansin-B1 (At-EXPB1) (AtEXPB1) (Ath-ExpBeta-1.5) (Beta-expansin-1),Expansin-B3 (At-EXPB3) (AtEXPB3) (Ath-ExpBeta-1.6) (Beta-expansin-3),Expansin B1,Expansin B3 Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is smaller. Short hypocotyl and small cotyledons under red light-P. Quail-2006 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 29108,28425,23678,22573,22185,27702 Expansin-B1 (At-EXPB1) (AtEXPB1) (Ath-ExpBeta-1.5) (Beta-expansin-1),Expansin-B3 (At-EXPB3) (AtEXPB3) (Ath-ExpBeta-1.6) (Beta-expansin-3),Expansin B1,Expansin B3 cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plasmodesma [GO:0009506]; cell wall organization [GO:0071555]; sexual reproduction [GO:0019953]; syncytium formation [GO:0006949],extracellular region [GO:0005576]; sexual reproduction [GO:0019953] locus:2051338;,locus:2123643; AT2G20750,AT4G28250 Pollen allergen NA NA NA NA NA NA NA ENOG411EAG2 MVA3.19 Q9FN70,A0A1P8BGB1 Q9FN70_ARATH,A0A1P8BGB1_ARATH Gb|AAF63775.1 (Plasma-membrane choline transporter family protein),Plasma-membrane choline transporter family protein 53119,50778 Gb|AAF63775.1 (Plasma-membrane choline transporter family protein),Plasma-membrane choline transporter family protein integral component of membrane [GO:0016021] locus:2175961; AT5G17830 Plasma-membrane choline transporter NA NA NA NA NA NA NA ENOG411ECPP BCA4,BCA3 Q94CE4,Q9ZUC2 BCA4_ARATH,BCA3_ARATH Beta carbonic anhydrase 4 (AtbCA4) (AtbetaCA4) (EC 4.2.1.1) (Beta carbonate dehydratase 4),Beta carbonic anhydrase 3 (AtbCA3) (AtbetaCA3) (EC 4.2.1.1) (Beta carbonate dehydratase 3) DISRUPTION PHENOTYPE: In plants lacking both BCA1 and BCA4, impaired CO(2)-regulation of stomatal movements associated with reduced beta carbonic anhydrase activity in guard cells, and increased stomatal density. {ECO:0000269|PubMed:20010812}. FUNCTION: Reversible hydration of carbon dioxide. Together with BCA1, involved in the CO(2) signaling pathway which controls gas-exchange between plants and the atmosphere by modulating stomatal development and movements. Promotes water use efficiency. {ECO:0000269|PubMed:20010812, ECO:0000269|PubMed:25043023}.,FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000250}. ARA:AT1G70410-MONOMER;,ARA:AT1G23730-MONOMER; 4.2.1.1 30836,28829 Beta carbonic anhydrase 4 (AtbCA4) (AtbetaCA4) (EC 4.2.1.1) (Beta carbonate dehydratase 4),Beta carbonic anhydrase 3 (AtbCA3) (AtbetaCA3) (EC 4.2.1.1) (Beta carbonate dehydratase 3) chloroplast envelope [GO:0009941]; plasma membrane [GO:0005886]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976]; negative regulation of stomatal complex development [GO:2000122]; regulation of stomatal movement [GO:0010119]; response to carbon dioxide [GO:0010037],cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976] TISSUE SPECIFICITY: Strongly expressed in aerial tissues including leaves, stems, flowers and siliques. Accumulates in both guard cells and mesophyll cells. {ECO:0000269|PubMed:17407539, ECO:0000269|PubMed:20010812}.,TISSUE SPECIFICITY: Strongly expressed in aerial tissues including leaves, stems, flowers and siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:17407539}. locus:2016109;,locus:2034797; AT1G70410,AT1G23730 carbonic anhydrase NA NA NA NA NA NA NA ENOG411ECPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein Sb1514s002020 source NA NA NA NA NA NA NA ENOG411EIKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) NA NA NA NA NA NA NA ENOG411EIKQ MDF20.19 Q9FM63 Q9FM63_ARATH Hydroxyproline-rich glycoprotein family protein 18296 Hydroxyproline-rich glycoprotein family protein integral component of membrane [GO:0016021] locus:2162217; AT5G55750 NA NA NA NA NA NA NA NA ENOG411EIKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase beta subunit NA NA NA NA NA NA NA ENOG411EIKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411EIKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKA EXT2,EXT13,EXT12,EXT10,EXT6,HRGP1 Q9M1G9,Q9ZUC3,Q9LHS1,Q9T0L0,Q9C668,Q9FG06,Q9STM7,Q9STN1,Q9C669,Q9STM8,Q9SK35,A0A1P8B7R7,A0A1P8B7S0,A0A1P8AM97,A0A1P8AM68,A0A1P8B4B8,A0A1P8AYF2,A0A1P8AM70,A0A1I9LRL7,A0A1P8BCU9,A0A1P8B3U5,F4JCZ1,A0A1P8AY99,F4JYC5,A0A1I9LMW9,F4J0B5,F4K3X4,A0A1P8B3U6 EXTN2_ARATH,Q9ZUC3_ARATH,Q9LHS1_ARATH,Q9T0L0_ARATH,Q9C668_ARATH,Q9FG06_ARATH,Q9STM7_ARATH,Q9STN1_ARATH,Q9C669_ARATH,Q9STM8_ARATH,Q9SK35_ARATH,A0A1P8B7R7_ARATH,A0A1P8B7S0_ARATH,A0A1P8AM97_ARATH,A0A1P8AM68_ARATH,A0A1P8B4B8_ARATH,A0A1P8AYF2_ARATH,A0A1P8AM70_ARATH,A0A1I9LRL7_ARATH,A0A1P8BCU9_ARATH,A0A1P8B3U5_ARATH,F4JCZ1_ARATH,A0A1P8AY99_ARATH,F4JYC5_ARATH,A0A1I9LMW9_ARATH,F4J0B5_ARATH,F4K3X4_ARATH,A0A1P8B3U6_ARATH Extensin-2 (AtExt2) (Cell wall hydroxyproline-rich glycoprotein 1) (HRGP1),F5O8.27 protein (Proline-rich extensin-like family protein),Proline-rich extensin-like family protein,Extensin-like protein (Proline-rich extensin-like family protein),Proline-rich extensin-like family protein (Uncharacterized protein F28B23.10),Proline-rich extensin-like family protein (Uncharacterized protein F28B23.9),Proline-rich extensin-like family protein (Uncharacterized protein At2g24980),Hydroxyproline-rich glycoprotein FUNCTION: Structural component which strengthens the primary cell wall. 83015,99664,37850,48313,52895,77508,79135,39400,49336,57333,63165,45374,18354,96888,99367,17673,63883,102170,73000,74732,46201,106412,61091,37123,75253,113770,49836,15409 Extensin-2 (AtExt2) (Cell wall hydroxyproline-rich glycoprotein 1) (HRGP1),F5O8.27 protein (Proline-rich extensin-like family protein),Proline-rich extensin-like family protein,Extensin-like protein (Proline-rich extensin-like family protein),Proline-rich extensin-like family protein (Uncharacterized protein F28B23.10),Proline-rich extensin-like family protein (Uncharacterized protein F28B23.9),Proline-rich extensin-like family protein (Uncharacterized protein At2g24980),Hydroxyproline-rich glycoprotein extracellular region [GO:0005576]; primary cell wall [GO:0009530]; structural constituent of cell wall [GO:0005199]; plant-type cell wall organization [GO:0009664],structural constituent of cell wall [GO:0005199]; plant-type cell wall organization [GO:0009664],integral component of membrane [GO:0016021]; structural constituent of cell wall [GO:0005199]; plant-type cell wall organization [GO:0009664] DEVELOPMENTAL STAGE: Early expressed in the whole plant, but was restricted to lower stems, flower buds and roots in the mature plant (6 weeks old). TISSUE SPECIFICITY: Predominantly expressed in the roots. locus:2096976;,locus:2034898;,locus:2142080;,locus:2028741;,locus:2144163;,locus:2137445;,locus:2137425;,locus:2028731;,locus:2137450;,locus:2047349;,locus:2182427;,locus:2144148; AT3G54590,AT1G23720,AT4G13390,AT1G26240,AT5G06640,AT4G08410,AT4G08370,AT1G26250,AT4G08400,AT2G24980,AT3G54580,AT5G35190,AT3G28550,AT5G06630 Structural component which strengthens the primary cell wall NA NA NA NA NA NA NA ENOG411EIK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EIK8 RALFL25,RALFL12,RALFL11,RALFL10,RALFL26,RALFL13 Q9LSG0,F4ISE1,O64466,O65919,Q0V822,F4ISE2 RLF25_ARATH,RLF12_ARATH,RLF11_ARATH,RLF10_ARATH,RLF26_ARATH,RLF13_ARATH Protein RALF-like 25,Protein RALF-like 12,Protein RALF-like 11,Protein RALF-like 10,Protein RALF-like 26,Protein RALF-like 13 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 8523,7880,7882,7979,8610,7881 Protein RALF-like 25,Protein RALF-like 12,Protein RALF-like 11,Protein RALF-like 10,Protein RALF-like 26,Protein RALF-like 13 apoplast [GO:0048046]; intracellular [GO:0005622]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267],condensed chromosome [GO:0000793]; extracellular region [GO:0005576]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267],apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12611624}. locus:505006372;,locus:2059068;,locus:2059046;,locus:2044435;,locus:2090260;,locus:4010713632; AT3G25165,AT2G19040,AT2G19030,AT2G19020,AT3G25170,AT2G19045 Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EIK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAWT IQ-domain 24,IQD24 Q9LYP2,A0A1P8BGZ2 Q9LYP2_ARATH,A0A1P8BGZ2_ARATH IQ-domain 24 (Uncharacterized protein At5g07240) (Uncharacterized protein T28J14_180),IQ-domain 24 45264,50768 IQ-domain 24 (Uncharacterized protein At5g07240) (Uncharacterized protein T28J14_180),IQ-domain 24 locus:2182920; AT5G07240 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EKJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0668300 protein (Fragment) A0A0N7KDH1 A0A0N7KDH1_ORYSJ Os01g0668300 OSNPB_010668300 ENOG411EKJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S1 RNA binding domain NA NA NA NA NA NA NA ENOG411EKJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EKJX SVR3 F4K410,F4K409 SVR3_ARATH,F4K409_ARATH Putative elongation factor TypA-like SVR3, chloroplastic (Protein HAPPY ON NORFLURAZON 23) (Protein SUPPRESSOR OF VARIEGATION 3),Elongation factor family protein DISRUPTION PHENOTYPE: Reduced plant growth, pale-green leaves with reduced levels of chlorophyll. Chilling-sensitive phenotype. {ECO:0000269|PubMed:21187014}. Leaf chlorosis at low temperature-F. Yu-2010 FUNCTION: Putative chloroplastic elongation factor involved in response to chilling stress. Required for proper chloroplast rRNA processing and/or translation at low temperature (PubMed:21187014). Involved in plastid protein homeostasis (PubMed:21208309). {ECO:0000269|PubMed:21187014, ECO:0000269|PubMed:21208309}. 74315,74414 Putative elongation factor TypA-like SVR3, chloroplastic (Protein HAPPY ON NORFLURAZON 23) (Protein SUPPRESSOR OF VARIEGATION 3),Elongation factor family protein chloroplast [GO:0009507]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; protein stabilization [GO:0050821]; response to cold [GO:0009409]; rRNA processing [GO:0006364],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; chloroplast RNA processing [GO:0031425]; regulation of gene expression [GO:0010468]; response to reactive oxygen species [GO:0000302] locus:2173169; AT5G13650 GTP-binding protein TypA Os02g0285800 protein (Putative GTP-binding protein typA),Os02g0285800 protein (Fragment) Q6KA61,A0A0P0VHP7 Q6KA61_ORYSJ,A0A0P0VHP7_ORYSJ Os02g0285800 OJ1115_D03.25 OSNPB_020285800,Os02g0285800 OSNPB_020285800 ENOG411EKJD Q8S9I8,A0A1P8AQA5,F4I6Q3 Q8S9I8_ARATH,A0A1P8AQA5_ARATH,F4I6Q3_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransferase (At1g64350/F15H21_2) (At1g64355),1-acyl-sn-glycerol-3-phosphate acyltransferase 21864,16120,18258 1-acyl-sn-glycerol-3-phosphate acyltransferase (At1g64350/F15H21_2) (At1g64355),1-acyl-sn-glycerol-3-phosphate acyltransferase integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups [GO:0016746] locus:505006201; AT1G64355 Protein of unknown function (DUF3593) Os05g0571400 protein (cDNA clone:001-102-A02, full insert sequence) Q65XL2 Q65XL2_ORYSJ Os05g0571400 Os05g0571400 OJ1735_C10.6 OSNPB_050571400 ENOG411EKJB ALDH12A1 Q8VZC3 AL121_ARATH Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (AtP5CDH) (P5C dehydrogenase) (EC 1.2.1.88) (Aldehyde dehydrogenase family 12 member A1) (L-glutamate gamma-semialdehyde dehydrogenase) FUNCTION: Plays a role in the inhibition of programmed cell death by converting the toxic proline catabolism intermediate (s)-1-pyrroline-5-carboxylate (P5C) to glutamate. {ECO:0000269|PubMed:11532180}. PATHWAY: Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 2/2. ARA:AT5G62530-MONOMER; 1.2.1.88; 1.2.1.88 61773 Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (AtP5CDH) (P5C dehydrogenase) (EC 1.2.1.88) (Aldehyde dehydrogenase family 12 member A1) (L-glutamate gamma-semialdehyde dehydrogenase) chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; 1-pyrroline-5-carboxylate dehydrogenase activity [GO:0003842]; cobalt ion binding [GO:0050897]; zinc ion binding [GO:0008270]; proline catabolic process to glutamate [GO:0010133]; proline metabolic process [GO:0006560]; reactive oxygen species metabolic process [GO:0072593]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Highly expressed in flowers. Constitutively expressed at low levels in the other tissues. {ECO:0000269|PubMed:11532180}. locus:2154094; AT5G62530 Dehydrogenase Os05g0536400 protein B9FLB9 B9FLB9_ORYSJ Os05g0536400 OsJ_19352 OSNPB_050536400 ENOG411EKJC SEH1 Q93VR9 SEH1_ARATH Protein SEH1 DISRUPTION PHENOTYPE: No visible phenotype, but enhanced susceptibility to virulent Pseudomonas bacteria and oomycete pathogens. {ECO:0000269|PubMed:22288649}. FUNCTION: Required for proper export of mRNAs from the nucleus to the cytoplasm. {ECO:0000269|PubMed:22288649}. 35696 Protein SEH1 cytoplasm [GO:0005737]; nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; mRNA transport [GO:0051028]; protein transport [GO:0015031] locus:2014210; AT1G64350 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKJ1 Q9ZT92 Q9ZT92_ARATH Oxidoreductase, 2OG-Fe(II) oxygenase family protein (Uncharacterized protein At4g02940) (Uncharacterized protein T4I9.18) 62687 Oxidoreductase, 2OG-Fe(II) oxygenase family protein (Uncharacterized protein At4g02940) (Uncharacterized protein T4I9.18) response to karrikin [GO:0080167] locus:2139345; AT4G02940 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EKJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Os07g0636400 protein (RNaseP-associated protein-like) Q7XIX6 Q7XIX6_ORYSJ OJ1136_D11.108 Os07g0636400 OSNPB_070636400 ENOG411EKJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Metaxin 2 Os06g0168000 protein (Fragment) A0A0N7KLL5 A0A0N7KLL5_ORYSJ Os06g0168000 OSNPB_060168000 ENOG411EKUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EG3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os10g0352000 protein (Fragment) Q0IY85 Q0IY85_ORYSJ Os10g0352000 OSNPB_100352000 ENOG411EG3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG3F ZPR2 Q9LZX5,B3H6W5 ZPR2_ARATH,B3H6W5_ARATH Protein LITTLE ZIPPER 2,Binding protein FUNCTION: Competitive inhibitor of the HD-ZIPIII transcription factors in shoot apical meristem (SAM) development. Acts by forming non-functional heterodimers. Part of a negative feedback loop. Essential for proper functioning of stem cells in the SAM. {ECO:0000250|UniProtKB:Q9LXI8}. 12347,12434 Protein LITTLE ZIPPER 2,Binding protein regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2101821; AT3G60890 Inherit from euNOG: little zipper 2 NA NA NA NA NA NA NA ENOG411EG3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EG3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EG3N Q9CAQ2,Q8H0Y9 Y1754_ARATH,Q8H0Y9_ARATH Acetyltransferase At1g77540 (EC 2.3.1.-) (Minimal acetyltransferase),Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At1g21770) FUNCTION: Possesses in vitro histone acetyltransferase activity with histones H3 and H4. {ECO:0000269|PubMed:17128971}. 2.3.1.- 12855,12561 Acetyltransferase At1g77540 (EC 2.3.1.-) (Minimal acetyltransferase),Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At1g21770) peroxisome [GO:0005777]; histone acetyltransferase activity [GO:0004402],peroxisome [GO:0005777]; transferase activity, transferring acyl groups [GO:0016746] locus:2204715;,locus:2036947; AT1G77540,AT1G21770 NA NA NA NA NA NA NA NA ENOG411EG34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Patatin group NA NA NA NA NA NA NA ENOG411EG38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411EEPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EEPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EEPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inositol monophosphatase family NA NA NA NA NA NA NA ENOG411EEPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frag1/DRAM/Sfk1 family NA NA NA NA NA NA NA ENOG411EEPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Chromodomain helicase DNA binding protein NA NA NA NA NA NA NA ENOG411EEPM Q058M7 Q058M7_ARATH At3g28840 36876 At3g28840 locus:2098398; AT3G28840 Protein of unknown function (DUF1216) NA NA NA NA NA NA NA ENOG411EEPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein, expressed (Os12g0595300 protein) (cDNA clone:002-116-H05, full insert sequence),Os09g0306000 protein,Os12g0594700 protein,Os12g0595200 protein,Os03g0353300 protein (Fragment),Os10g0434300 protein,Os12g0595401 protein Q2QMQ7,Q69KN9,A0A0P0YC15,A0A0P0YCP0,A0A0P0VYB3,A0A0P0XUW6,A0A0P0YBU9 Q2QMQ7_ORYSJ,Q69KN9_ORYSJ,A0A0P0YC15_ORYSJ,A0A0P0YCP0_ORYSJ,A0A0P0VYB3_ORYSJ,A0A0P0XUW6_ORYSJ,A0A0P0YBU9_ORYSJ Os12g0595300 LOC_Os12g40360 OSNPB_120595300,OSJNBa0064I23.12 Os09g0306000 OSNPB_090306000,Os12g0594700 OSNPB_120594700,Os12g0595200 OSNPB_120595200,Os03g0353300 OSNPB_030353300,Os10g0434300 OSNPB_100434300,Os12g0595401 OSNPB_120595401 ENOG411EEPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EEPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L40e family NA NA NA NA NA NA NA ENOG411EEPW MAF19.18 F4K208 F4K208_ARATH Putative endonuclease or glycosyl hydrolase 41469 Putative endonuclease or glycosyl hydrolase peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; regulation of gene expression [GO:0010468] locus:2159491; AT5G61180 Pfam:DUF88 NA NA NA NA NA NA NA ENOG411EEPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os09g0545700 protein (Putative auxin induced protein),Os09g0547000 protein (Putative auxin induced protein) (cDNA clone:001-106-E02, full insert sequence),Os09g0547033 protein,Os03g0290100 protein Q651R2,Q651Q3,A0A0P0XPZ8,A0A0P0VWA3 Q651R2_ORYSJ,Q651Q3_ORYSJ,A0A0P0XPZ8_ORYSJ,A0A0P0VWA3_ORYSJ Os09g0545700 OsJ_30207 OSJNBa0038K02.3 OSNPB_090545700,Os09g0547000 OSJNBa0038K02.16 OSNPB_090547000,Os09g0547033 OSNPB_090547033,Os03g0290100 OSNPB_030290100 ENOG411EEP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EEP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EEP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK8M Q9LVF3,A0A1I9LPP5 Q9LVF3_ARATH,A0A1I9LPP5_ARATH DNAse I-like superfamily protein (Uncharacterized protein At3g21530),DNAse I-like superfamily protein 52026,37507 DNAse I-like superfamily protein (Uncharacterized protein At3g21530),DNAse I-like superfamily protein locus:2089930; AT3G21530 Endonuclease Exonuclease phosphatase NA NA NA NA NA NA NA ENOG411EK8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP binding kinase protein serine threonine kinase receptor signaling protein serine threonine kinase NA NA NA NA NA NA NA ENOG411EK8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved carboxylase domain NA NA NA NA NA NA NA ENOG411EK8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBM_2 NA NA NA NA NA NA NA ENOG411EK8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EK8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear pore complex protein NA NA NA NA NA NA NA ENOG411EK8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoporin autopeptidase NA NA NA NA NA NA NA ENOG411EK8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nuclear pore complex protein NA NA NA NA NA NA NA ENOG411EK8A SPI,BCHA2 F4HZB2,F4JHT3,A0A1P8AT19,A0A1P8B7J3,A0A1P8AT57,A0A1P8AT16 BCHA1_ARATH,BCHA2_ARATH,A0A1P8AT19_ARATH,A0A1P8B7J3_ARATH,A0A1P8AT57_ARATH,A0A1P8AT16_ARATH Protein SPIRRIG (BEACH domain-containing protein A1) (BEACH-domain homolog A1),BEACH domain-containing protein A2 (BEACH-domain homolog A2),BEACH-DOMAIN HOMOLOG A1,Beige/BEACH and WD40 domain-containing protein DISRUPTION PHENOTYPE: Distorted trichomes, decreased lobing of epidermal pavement cells, disconnected epidermal cells on various organs and shorter root hairs (PubMed:19392685). Fragmented vacuoles in root hairs (PubMed:19392685). Salt hypersensitivity. {ECO:0000269|PubMed:19392685, ECO:0000269|PubMed:26133670}. Trichome cells have shorter branches reduced stalk length and width. Epidermal pavement cells are less complex with less lobing. Root hairs are shorter and root hair vacuoles are fragmented. Short hypocotyl; Short root hairs; Abnormal trichome and pavement cell morphology-M. Hulskamp-2009 FUNCTION: Involved in cell morphogenesis (PubMed:19392685). May have a function in membrane fusion or membrane composition (PubMed:19392685). Required for salt stress tolerance (PubMed:26133670). Regulates the salt stress-dependent post-transcriptional stabilization, cytoplasmic agglomeration, and localization to P-bodies of a subset of salt stress-regulated mRNAs (PubMed:26133670). {ECO:0000269|PubMed:19392685, ECO:0000269|PubMed:26133670}. 400894,393325,397665,398950,400807,397752 Protein SPIRRIG (BEACH domain-containing protein A1) (BEACH-domain homolog A1),BEACH domain-containing protein A2 (BEACH-domain homolog A2),BEACH-DOMAIN HOMOLOG A1,Beige/BEACH and WD40 domain-containing protein P-body [GO:0000932]; cellular response to salt stress [GO:0071472]; cytoplasmic mRNA processing body assembly [GO:0033962]; multidimensional cell growth [GO:0009825]; regulation of intracellular mRNA localization [GO:1904580]; response to abscisic acid [GO:0009737]; trichome morphogenesis [GO:0010090]; vacuole organization [GO:0007033],chloroplast [GO:0009507] TISSUE SPECIFICITY: Expressed in flowers, leaves, stems, hypocotyls and roots. {ECO:0000269|PubMed:19392685}. locus:2007514;,locus:2132392; AT1G03060,AT4G02660 BEACH domain-containing protein lvsA-like Os03g0744675 protein,Os03g0744650 protein A0A0N7KI13,A0A0P0W353 A0A0N7KI13_ORYSJ,A0A0P0W353_ORYSJ Os03g0744675 OSNPB_030744675,Os03g0744650 OSNPB_030744650 ENOG411EK8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411EK8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EK8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0818600 protein (Os01g0818700 protein) (Fragment),Os05g0481100 protein (cDNA clone:J013034D11, full insert sequence),Os05g0481100 protein (Fragment),Os05g0481100 protein C7IWS6,B7F5L0,A0A0P0WP01,A0A0P0WNV2,A0A0P0WNM3,A0A0P0WNS8 C7IWS6_ORYSJ,B7F5L0_ORYSJ,A0A0P0WP01_ORYSJ,A0A0P0WNV2_ORYSJ,A0A0P0WNM3_ORYSJ,A0A0P0WNS8_ORYSJ Os01g0818700 Os01g0818600 OSNPB_010818700,Os05g0481100 OSNPB_050481100 ENOG411EK8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0685750 protein (Fragment) A0A0P0W278 A0A0P0W278_ORYSJ Os03g0685750 OSNPB_030685750 ENOG411EK8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: furry homolog (Drosophila) NA NA NA NA NA NA NA ENOG411EK8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK8W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: (regulatory) subunit NA NA NA NA NA NA NA ENOG411EK8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase 3 N-terminal region NA NA NA NA NA NA NA ENOG411EK8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin carboxyl-terminal hydrolase Ubiquitinyl hydrolase 1 (EC 3.4.19.12) Q0J0M6 Q0J0M6_ORYSJ Os09g0505100 Os09g0505100 OsJ_29927 OSNPB_090505100 ENOG411EK88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411EK84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: uhrf1 binding protein Os06g0731950 protein (Fragment) C7J3U7 C7J3U7_ORYSJ Os06g0731950 Os06g0731950 OSNPB_060731950 ENOG411EK86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0125000 protein Q6Z703 Q6Z703_ORYSJ P0575F10.35-1 Os02g0125000 OSNPB_020125000 ENOG411EK80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0442400 protein Q67UU1 Q67UU1_ORYSJ Os09g0442400 OSNPB_090442400 P0046G12.23 ENOG411EK81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: R3H domain and coiled-coil containing 1-like NA NA NA NA NA NA NA ENOG411EK82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DBC1 ATP/GTP-binding protein-like (Os06g0562700 protein) Q5Z904 Q5Z904_ORYSJ Os06g0562700 Os06g0562700 OSNPB_060562700 P0656E03.14 ENOG411EK83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DBC1 NA NA NA NA NA NA NA ENOG411EAQK RTM3 Q9C869,Q9M2H6,Q9SHT3,Q9C870,Q9SHT2,D5K228,Q8L7J1,Q9C872,Q9SHT4 MCC02_ARATH,MCC28_ARATH,MCC04_ARATH,MCC01_ARATH,MCC05_ARATH,RTM3_ARATH,Q8L7J1_ARATH,Q9C872_ARATH,Q9SHT4_ARATH MATH domain and coiled-coil domain-containing protein At1g31400 (RTM3-like protein At1g31400),MATH domain and coiled-coil domain-containing protein At3g58400 (RTM3-like protein At3g58400),MATH domain and coiled-coil domain-containing protein At2g05410 (RTM3-like protein At2g05410),MATH domain and coiled-coil domain-containing protein At1g31390 (RTM3-like protein At1g31390),MATH domain and coiled-coil domain-containing protein At2g05420 (RTM3-like protein At2g05420),Protein RESTRICTED TEV MOVEMENT 3 (Protein RTM3) (MATH domain and coiled-coil domain-containing protein RTM3) (Restricted tobacco etch virus movement protein 3),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein At2g05400/F16J10.5),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein T8E3.14),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein At2g05400) DISRUPTION PHENOTYPE: Susceptible to systemic infection by tobacco etch virus (TEV) and to some isolates of lettuce mosaic virus (LMV) and plum pox virus (PPV). {ECO:0000269|PubMed:20584941}. FUNCTION: Required for the restriction of long-distance movement of the pathogenic tobacco etch virus (TEV) without causing a hypersensitive response or inducing systemic acquired resistance. {ECO:0000269|PubMed:20478894, ECO:0000269|PubMed:20584941}. 31316,33244,34504,32002,33643,34072,21782,21611,24518 MATH domain and coiled-coil domain-containing protein At1g31400 (RTM3-like protein At1g31400),MATH domain and coiled-coil domain-containing protein At3g58400 (RTM3-like protein At3g58400),MATH domain and coiled-coil domain-containing protein At2g05410 (RTM3-like protein At2g05410),MATH domain and coiled-coil domain-containing protein At1g31390 (RTM3-like protein At1g31390),MATH domain and coiled-coil domain-containing protein At2g05420 (RTM3-like protein At2g05420),Protein RESTRICTED TEV MOVEMENT 3 (Protein RTM3) (MATH domain and coiled-coil domain-containing protein RTM3) (Restricted tobacco etch virus movement protein 3),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein At2g05400/F16J10.5),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein T8E3.14),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein At2g05400) protein self-association [GO:0043621]; defense response to virus [GO:0051607]; response to virus [GO:0009615]; transport of virus in host, tissue to tissue [GO:0046741],peptidase activity [GO:0008233] locus:2197505;,locus:2085325;,locus:2042788;,locus:2197495;,locus:2042783;,locus:2085375;,locus:2042793;,locus:2197475; AT1G31400,AT3G58400,AT2G05410,AT1G31390,AT2G05420,AT3G58350,AT2G05400,AT1G31370 MATH domain NA NA NA NA NA NA NA ENOG411DVT2 IDD9,IDD13,MUF9.10 Q944L3,F4JYZ8,A0A1P8BF95,A0A1P8BF91 IDD9_ARATH,IDD13_ARATH,A0A1P8BF95_ARATH,A0A1P8BF91_ARATH Protein indeterminate-domain 9 (ID1-like zinc finger protein 1),Protein indeterminate-domain 13,C2H2 and C2HC zinc fingers superfamily protein FUNCTION: Probable transcription factor. {ECO:0000305}. 49941,50484,51585,51096 Protein indeterminate-domain 9 (ID1-like zinc finger protein 1),Protein indeterminate-domain 13,C2H2 and C2HC zinc fingers superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676] locus:2078262;,locus:2175123; AT3G45260,AT5G60470 zinc finger NA NA NA NA NA NA NA ENOG411DVT3 BRCC36A,BRCC36B Q8RW94,F4JC55,A8MRH7,B3H5T3 Q8RW94_ARATH,F4JC55_ARATH,A8MRH7_ARATH,B3H5T3_ARATH At1g80210/F18B13_28 (Mov34/MPN/PAD-1 family protein),Mov34/MPN/PAD-1 family protein 44484,44412,35558,40734 At1g80210/F18B13_28 (Mov34/MPN/PAD-1 family protein),Mov34/MPN/PAD-1 family protein BRCA1-A complex [GO:0070531]; BRISC complex [GO:0070552]; nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; protein K63-linked deubiquitination [GO:0070536],BRCA1-A complex [GO:0070531]; BRISC complex [GO:0070552]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; DNA repair [GO:0006281]; protein K63-linked deubiquitination [GO:0070536] locus:2016279;,locus:2083318; AT1G80210,AT3G06820 Pfam:Mov34 Os05g0542600 protein (cDNA clone:J033035N15, full insert sequence) Q0DGB3 Q0DGB3_ORYSJ Os05g0542600 Os05g0542600 OsJ_19403 OSNPB_050542600 ENOG411DVT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os07g0644600 protein (cDNA clone:J023055N06, full insert sequence) Q7XIP5 Q7XIP5_ORYSJ OJ1458_B07.110 OJ1003_C06.142 Os07g0644600 OSNPB_070644600 ENOG411DWZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like Os06g0291800 protein,Os06g0292400 protein,Os06g0292100 protein C7J464,A3BAV3,A0A0P0WVK2 C7J464_ORYSJ,A3BAV3_ORYSJ,A0A0P0WVK2_ORYSJ Os06g0291800 Os06g0291800 OSNPB_060291800,Os06g0292400 OsJ_21032 OSNPB_060292400,Os06g0292100 OSNPB_060292100 ENOG411DVT6 Q93ZD6,A0A1P8B3Z4 Q93ZD6_ARATH,A0A1P8B3Z4_ARATH AT4g24880/F13M23_20 (At4g24880) (Snurportin-1 protein),Snurportin-1 protein 46972,38974 AT4g24880/F13M23_20 (At4g24880) (Snurportin-1 protein),Snurportin-1 protein locus:2117348; AT4G24880 Inherit from KOG: Snurportin 1 Os01g0101300 protein Q0JRH2 Q0JRH2_ORYSJ Os01g0101300 Os01g0101300 OSNPB_010101300 ENOG411DVT7 MPT1 Q7DNC3 MPCP1_ARATH Mitochondrial phosphate carrier protein 1, mitochondrial (Mitochondrial phosphate transporter 1) (MPT1) (Phosphate transporter 3;3) FUNCTION: Transport of phosphate groups from the cytosol to the mitochondrial matrix. Mediates salt stress tolerance through an ATP-dependent pathway and via modulation of the gibberellin metabolism. {ECO:0000269|PubMed:22937061}. MISCELLANEOUS: Plants overexpressing MPT1/PHT3;3 display increased sensitivity to salt stress. {ECO:0000305|PubMed:22937061}. 34278 Mitochondrial phosphate carrier protein 1, mitochondrial (Mitochondrial phosphate transporter 1) (MPT1) (Phosphate transporter 3;3) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; phosphate ion transmembrane transporter activity [GO:0015114]; mitochondrial transport [GO:0006839]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in stems, leaves and flowers. Strong expression in the stamens of flowers. {ECO:0000269|PubMed:22937061}. locus:2827555; AT2G17270 Phosphate carrier protein Os09g0554000 protein Q0IZR6 Q0IZR6_ORYSJ Os09g0554000 Os09g0554000 OSNPB_090554000 ENOG411DVT4 Q93YU6 TRM51_ARATH tRNA (guanine(37)-N1)-methyltransferase 1 (EC 2.1.1.228) (M1G-methyltransferase 1) (tRNA [GM37] methyltransferase 1) (tRNA methyltransferase 5 homolog 1) FUNCTION: Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. {ECO:0000255|HAMAP-Rule:MF_03152}. 2.1.1.228 52915 tRNA (guanine(37)-N1)-methyltransferase 1 (EC 2.1.1.228) (M1G-methyltransferase 1) (tRNA [GM37] methyltransferase 1) (tRNA methyltransferase 5 homolog 1) cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; nucleus [GO:0005634]; tRNA (guanine(37)-N(1))-methyltransferase activity [GO:0052906] locus:2078386; AT3G56120 Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW) a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (By similarity) Os02g0606300 protein A0A0P0VLQ4 A0A0P0VLQ4_ORYSJ Os02g0606300 OSNPB_020606300 ENOG411DVT5 CRRSP60 Q0WPN8 CRR60_ARATH Cysteine-rich repeat secretory protein 60 (Plasmodesmata-located protein 7) (PDLP7) This mutant does not show any obvious abnormal growth or developmental phenotype. FUNCTION: Modulates cell-to-cell trafficking. {ECO:0000250}. 31603 Cysteine-rich repeat secretory protein 60 (Plasmodesmata-located protein 7) (PDLP7) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transport [GO:0006810]; viral process [GO:0016032] TISSUE SPECIFICITY: Highly expressed in lateral root and elongation zone. {ECO:0000269|PubMed:19704520}. locus:2151709; AT5G37660 cysteine-rich repeat secretory protein NA NA NA NA NA NA NA ENOG411DVT8 Q9LK57,Q9LG23 PP226_ARATH,PPR82_ARATH Pentatricopeptide repeat-containing protein At3g13160, mitochondrial,Pentatricopeptide repeat-containing protein At1g55890, mitochondrial 44928,44994 Pentatricopeptide repeat-containing protein At3g13160, mitochondrial,Pentatricopeptide repeat-containing protein At1g55890, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2090034;,locus:2012120; AT3G13160,AT1G55890 Pentatricopeptide repeat-containing protein Drought-inducible protein 1OS (Os01g0785700 protein) (cDNA clone:J023120B17, full insert sequence) (cDNA clone:J033082K10, full insert sequence) Q8LQM2 Q8LQM2_ORYSJ Os01g0785700 B1070A12.29 OsJ_03709 OSNPB_010785700 ENOG411DVT9 Q500U9,A0A1P8AMF1 Q500U9_ARATH,A0A1P8AMF1_ARATH At1g03030 (Uncharacterized protein At1g03030) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein 34057,33247 At1g03030 (Uncharacterized protein At1g03030) (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; uridine kinase activity [GO:0004849]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; kinase activity [GO:0016301] locus:2007544; AT1G03030 uridine kinase Os12g0601200 protein (Phosphoribulokinase/uridine kinase family protein, putative, expressed),Os12g0601200 protein (Phosphoribulokinase/uridine kinase family protein, putative, expressed) (cDNA clone:006-210-A06, full insert sequence) Q2QMK3,Q2QMK2 Q2QMK3_ORYSJ,Q2QMK2_ORYSJ Os12g0601200 LOC_Os12g40880 OSNPB_120601200,Os12g0601200 LOC_Os12g40880 Os12g0601200 OsJ_36764 OSNPB_120601200 ENOG411DVTB SMC2-1,SMC2-2,ATSMC2 Q9C5Y4,Q9SN90,A0A1I9LLC4 SMC21_ARATH,SMC22_ARATH,A0A1I9LLC4_ARATH Structural maintenance of chromosomes protein 2-1 (AtSMC2-1) (Chromosome-associated protein E-1) (AtCAP-E1) (Protein TITAN 3),Structural maintenance of chromosomes protein 2-2 (AtSMC2-2) (Chromosome-associated protein E-2) (AtCAP-E2),Structural maintenance of chromosomes protein Embryo defective; Large nuclei in endosperm; Gametophyte defective-D. Meinke-2002 FUNCTION: Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Also involved in chromosome segregation in meiosis. {ECO:0000269|PubMed:11846874, ECO:0000269|PubMed:12783798}.,FUNCTION: Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Also involved in chromosome segregation in meiosis. R-ATH-2299718;R-ATH-2514853; 132600,132315,132655 Structural maintenance of chromosomes protein 2-1 (AtSMC2-1) (Chromosome-associated protein E-1) (AtCAP-E1) (Protein TITAN 3),Structural maintenance of chromosomes protein 2-2 (AtSMC2-2) (Chromosome-associated protein E-2) (AtCAP-E2),Structural maintenance of chromosomes protein condensin complex [GO:0000796]; nucleus [GO:0005634]; ATP binding [GO:0005524]; transporter activity [GO:0005215]; cell division [GO:0051301]; chromosome condensation [GO:0030261]; meiotic cell cycle [GO:0051321],chromosome [GO:0005694]; nucleus [GO:0005634]; ATP binding [GO:0005524]; transporter activity [GO:0005215]; cell division [GO:0051301]; chromosome condensation [GO:0030261]; meiotic cell cycle [GO:0051321],chromosome [GO:0005694]; nucleus [GO:0005634]; ATP binding [GO:0005524]; chromosome organization [GO:0051276] TISSUE SPECIFICITY: Highly expressed in roots and young floral buds. {ECO:0000269|PubMed:12783798}. locus:2167973;,locus:2079107; AT5G62410,AT3G47460 structural maintenance of chromosomes protein Structural maintenance of chromosomes protein Q5N6W1 Q5N6W1_ORYSJ Os01g0904400 Os01g0904400 OSNPB_010904400 P0551C06.46 ENOG411DVTC RCF3 Q8W4B1,F4KIZ8,A0A1P8BB62 RCF3_ARATH,F4KIZ8_ARATH,A0A1P8BB62_ARATH RNA-binding KH domain-containing protein RCF3 (Protein ENHANCED STRESS RESPONSE 1) (Protein HIGH OSMOTIC STRESS GENE EXPRESSION 5) (Protein REGULATOR OF CBF GENE EXPRESSION 3) (Protein SHINY 1),RNA-binding KH domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:23087326, PubMed:23874224, PubMed:24146632, PubMed:25985302). Mutant seedlings show increased tolerance to heat stress (PubMed:23087326, PubMed:25985302). Mutant seedlings show increased sensitivity to salt stress and abscisic acid (ABA) (PubMed:24146632). Mutant plants exhibit increased resistance to the fungal pathogen Fusarium oxysporum (PubMed:25985302). {ECO:0000269|PubMed:23087326, ECO:0000269|PubMed:23874224, ECO:0000269|PubMed:24146632, ECO:0000269|PubMed:25985302}. FUNCTION: Acts as negative regulator of osmotic stress-induced gene expression (PubMed:10504578). Involved in the regulation of thermotolerance responses under heat stress. Functions as an upstream regulator of heat stress transcription factor (HSF) genes. Negatively regulates HSFA1A, HSFA1B AND HSFA1D, but positively controls the expression of HSFA1E, HSFA3, HSFA9, HSFB3, and DREB2C (PubMed:23087326). Forms a complex with CPL1 that modulates co-transcriptional processes such as mRNA capping and polyadenylation, and functions to repress stress-inducible gene expression (PubMed:23874224). Regulates pre-mRNA processing under salt stress (PubMed:24146632). Involved in primary miRNA processing and pri-miRNA biogenesis (PubMed:26227967, PubMed:26512101). Binds both intronless and intron-containing pri-miRNAs (PubMed:26227967). Acts as a regulator of biotic stress response gene expression and basal JA-mediated responses involved in defense. Acts as negative regulator of resistance to the fungal pathogen Fusarium oxysporum (PubMed:25985302). {ECO:0000269|PubMed:10504578, ECO:0000269|PubMed:23087326, ECO:0000269|PubMed:23874224, ECO:0000269|PubMed:24146632, ECO:0000269|PubMed:25985302, ECO:0000269|PubMed:26227967, ECO:0000269|PubMed:26512101}. 71345,21818,62196 RNA-binding KH domain-containing protein RCF3 (Protein ENHANCED STRESS RESPONSE 1) (Protein HIGH OSMOTIC STRESS GENE EXPRESSION 5) (Protein REGULATOR OF CBF GENE EXPRESSION 3) (Protein SHINY 1),RNA-binding KH domain-containing protein nuclear dicing body [GO:0010445]; nuclear speck [GO:0016607]; primary miRNA binding [GO:0070878]; heat acclimation [GO:0010286]; jasmonic acid mediated signaling pathway [GO:0009867]; mRNA processing [GO:0006397]; primary miRNA processing [GO:0031053]; regulation of defense response to fungus [GO:1900150]; regulation of gene expression [GO:0010468]; response to osmotic stress [GO:0006970]; RNA splicing [GO:0008380],integral component of membrane [GO:0016021]; RNA binding [GO:0003723],RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, flowers and siliques. {ECO:0000269|PubMed:23874224, ECO:0000269|PubMed:24146632}. locus:2168367; AT5G53060 KH domain-containing protein Os06g0342500 protein (Putative HEN4) Q5Z9X9 Q5Z9X9_ORYSJ P0459H02.14 Os06g0342500 OSNPB_060342500 ENOG411DVTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (No apical meristem) protein Os06g0726300 protein (Putative NAC transcription factor) Q5Z7Q4 Q5Z7Q4_ORYSJ Os06g0726300 OsJ_22714 OSNPB_060726300 P0017G10.6 P0548E04.26 ENOG411DVTF LHCB5 Q9XF89 CB5_ARATH Chlorophyll a-b binding protein CP26, chloroplastic (LHCB5) (LHCIIc) (Light-harvesting complex II protein 5) The mutant shows ABA insensitivity in stomatal movement including promotion of stomatal closure and inhibition of stomatal opening. The detached leaves of the mutant lose more water than those of the wild-type plants under dehydration condition; both young seedlings and mature plants of the mutant have lower capacity to conserve water during drought stress in comparison with wild-type plants. The ROS levels increase in the mutant in comparison with wild-type plants in both the whole leaves and in guard cells. Treatment with low concentrations of ABA reduces ROS levels in both whole leaves(1 to 10 uM ABA application) and in guard cells(5 uM ABA application) in the mutant plants. FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. 30157 Chlorophyll a-b binding protein CP26, chloroplastic (LHCB5) (LHCIIc) (Light-harvesting complex II protein 5) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; photosystem II antenna complex [GO:0009783]; plastoglobule [GO:0010287]; PSII associated light-harvesting complex II [GO:0009517]; thylakoid [GO:0009579]; thylakoid membrane [GO:0042651]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; nonphotochemical quenching [GO:0010196]; photosynthesis [GO:0015979]; photosynthesis, light harvesting in photosystem I [GO:0009768]; photosystem II assembly [GO:0010207]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to far red light [GO:0010218]; response to red light [GO:0010114] locus:2122794; AT4G10340 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic Q53N83 Q53N83_ORYSJ Os11g0242800 LOC_Os11g13890 Os11g0242800 OsJ_33501 OSNPB_110242800 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DVTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain-containing protein SPX domain-containing protein 6 (Protein SPX DOMAIN GENE 6) (OsSPX6),SPX domain-containing protein 3 (Protein SPX DOMAIN GENE 3) (OsSPX3),Os07g0614700 protein Q8H398,Q7XEY9,A0A0P0X8L1 SPX6_ORYSJ,SPX3_ORYSJ,A0A0P0X8L1_ORYSJ SPX6 Os07g0614700 OsJ_25123 P0616D06.120,SPX3 Os10g0392600 LOC_Os10g25310 OsJ_31398,Os07g0614700 OSNPB_070614700 DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with SPX5. {ECO:0000269|PubMed:24368504}. FUNCTION: May be involved in maintaining cellular Pi homeostasis when plants are exposed to an external change in Pi. {ECO:0000250|UniProtKB:Q7Y0F6}.,FUNCTION: Functional repressor of PHR2 (PubMed:24368504). Involved in maintaining cellular Pi homeostasis when plants are exposed to an external change in Pi (PubMed:24368504). Negatively regulates root-to-shoot Pi translocation redundantly with SPX3 (PubMed:24368504). Downregulates the non-coding RNA IPS1 (At3g09922) and suppresses the responses of miR399 and PHO2 to Pi-starvation (PubMed:19566645). {ECO:0000269|PubMed:19566645, ECO:0000269|PubMed:24368504}. ENOG411DVTD UEV1D,UEV1D-4 Q9SVD7,F4J6Z1 UEV1D_ARATH,F4J6Z1_ARATH Ubiquitin-conjugating enzyme E2 variant 1D (Ubc enzyme variant 1D) (Protein MMS ZWEI HOMOLOG 4),Ubiquitin E2 variant 1D-4 DISRUPTION PHENOTYPE: Plants do not display apparent morphological variations, but are sensitive to the DNA-damaging agent MMS. {ECO:0000269|PubMed:18178771}. Germination and seedling growth sensitive to MMS (inducer of genotoxic stress)-W. Xiao-2008 FUNCTION: Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. Involved in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. {ECO:0000269|PubMed:17586653, ECO:0000269|PubMed:18178771}. R-ATH-446652;R-ATH-5693565; 16533,18589 Ubiquitin-conjugating enzyme E2 variant 1D (Ubc enzyme variant 1D) (Protein MMS ZWEI HOMOLOG 4),Ubiquitin E2 variant 1D-4 nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; protein K63-linked ubiquitination [GO:0070534],cytosol [GO:0005829]; cellular response to DNA damage stimulus [GO:0006974]; postreplication repair [GO:0006301] DEVELOPMENTAL STAGE: Detected in seedlings 6 hours and 2 days post-germination. {ECO:0000269|PubMed:18178771}. TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, stems, flowers and pollen. {ECO:0000269|PubMed:18178771}. locus:2079984; AT3G52560 Ubiquitin-conjugating enzyme E2 variant NA NA NA NA NA NA NA ENOG411DVTE KINB1,KINB2,AKINBETA1 Q84VQ1,Q9SCY5,A0A1P8BB45,Q2V357 KINB1_ARATH,KINB2_ARATH,A0A1P8BB45_ARATH,Q2V357_ARATH SNF1-related protein kinase regulatory subunit beta-1 (AKIN subunit beta-1) (AKINB1) (AKINbeta1),SNF1-related protein kinase regulatory subunit beta-2 (AKIN subunit beta-2) (AKINB2) (AKINbeta2),5'-AMP-activated protein kinase beta-2 subunit protein FUNCTION: Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase. R-ATH-163680;R-ATH-200425;R-ATH-380972; Adipocytokine signaling pathway (04920),Circadian rhythm (04710),Hypertrophic cardiomyopathy (HCM) (05410),Insulin signaling pathway (04910) 30724,31993,26684,34872 SNF1-related protein kinase regulatory subunit beta-1 (AKIN subunit beta-1) (AKINB1) (AKINbeta1),SNF1-related protein kinase regulatory subunit beta-2 (AKIN subunit beta-2) (AKINB2) (AKINbeta2),5'-AMP-activated protein kinase beta-2 subunit protein ATP binding [GO:0005524]; carbohydrate metabolic process [GO:0005975]; cellular response to nitrogen levels [GO:0043562]; fatty acid biosynthetic process [GO:0006633]; nitrate assimilation [GO:0042128]; response to sucrose [GO:0009744],kinase activity [GO:0016301]; cellular response to nitrogen levels [GO:0043562]; response to sucrose [GO:0009744],kinase activity [GO:0016301]; protein kinase regulator activity [GO:0019887]; cellular response to nitrogen levels [GO:0043562]; response to sucrose [GO:0009744] TISSUE SPECIFICITY: Expressed in vegetative organs and, to lower extent, in reproductive organs. {ECO:0000269|PubMed:10417704}.,TISSUE SPECIFICITY: Expressed in leaves, stems, roots, flower buds and flowers. Not detectable in siliques. {ECO:0000269|PubMed:10417704}. locus:2178963; AT5G21170,AT4G16360 SNF1-related protein kinase regulatory subunit Os05g0491200 protein (cDNA clone:J013157L19, full insert sequence) Q6F337 Q6F337_ORYSJ Os05g0491200 OSJNBa0088I06.10 OSNPB_050491200 ENOG411DVTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0603800 protein (cDNA clone:J013086C21, full insert sequence),Os01g0604150 protein,Os07g0468500 protein (Fragment) B7ECP2,A0A0P0V4Y9,A0A0P0X5V6 B7ECP2_ORYSJ,A0A0P0V4Y9_ORYSJ,A0A0P0X5V6_ORYSJ Os01g0603800 OSNPB_010603800,Os01g0604150 OSNPB_010604150,Os07g0468500 OSNPB_070468500 ENOG411DVTK EXPA15,EXPA10,EXPA8,EXPA1 O80622,Q9LDR9,O22874,Q9C554,C0Z241,F4HPC1,B3H5D9,F4I266 EXP15_ARATH,EXP10_ARATH,EXPA8_ARATH,EXPA1_ARATH,C0Z241_ARATH,F4HPC1_ARATH,B3H5D9_ARATH,F4I266_ARATH Expansin-A15 (AtEXPA15) (Alpha-expansin-15) (At-EXP15) (AtEx15) (Ath-ExpAlpha-1.3),Expansin-A10 (AtEXPA10) (Alpha-expansin-10) (At-EXP10) (AtEx10) (Ath-ExpAlpha-1.1),Expansin-A8 (AtEXPA8) (Alpha-expansin-8) (At-EXP8) (AtEx8) (Ath-ExpAlpha-1.11),Expansin-A1 (AtEXPA1) (Alpha-expansin-1) (At-EXP1) (AtEx1) (Ath-ExpAlpha-1.2),AT1G69530 protein (Expansin A1),Expansin A10,Expansin A1 FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}.,FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Plays a major role in control of leaf growth and influences the mechanical breakage behavior of the pedicel. 27077,26428,27260,26518,29280,27602,23448,26211 Expansin-A15 (AtEXPA15) (Alpha-expansin-15) (At-EXP15) (AtEx15) (Ath-ExpAlpha-1.3),Expansin-A10 (AtEXPA10) (Alpha-expansin-10) (At-EXP10) (AtEx10) (Ath-ExpAlpha-1.1),Expansin-A8 (AtEXPA8) (Alpha-expansin-8) (At-EXP8) (AtEx8) (Ath-ExpAlpha-1.11),Expansin-A1 (AtEXPA1) (Alpha-expansin-1) (At-EXP1) (AtEx1) (Ath-ExpAlpha-1.2),AT1G69530 protein (Expansin A1),Expansin A10,Expansin A1 cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664]; syncytium formation [GO:0006949],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664],extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plant-type cell wall organization [GO:0009664]; regulation of stomatal movement [GO:0010119]; response to gibberellin [GO:0009739]; response to red light [GO:0010114]; syncytium formation [GO:0006949],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; structural constituent of cell wall [GO:0005199]; plant-type cell wall loosening [GO:0009828]; syncytium formation [GO:0006949] DEVELOPMENTAL STAGE: Expression is first seen at the base of the emerging first two true leaves but not of the cotyledons. As leaf development progresses expression begins in the base of the petiole and gradually extends toward the whole midrib and later it is restricted to the vasculature of the petiole and leaf blade and disappears as the leaf matures. TISSUE SPECIFICITY: Most highly expressed in the young leaf petiole and midrib, in trichomes and at the base of the pedicel.,TISSUE SPECIFICITY: Expressed in stomatal guard cells and very young vascular bundles throughout the plant. {ECO:0000269|Ref.5}. locus:2056670;,locus:2061918;,locus:2007106;,locus:2200625; AT2G03090,AT1G26770,AT2G40610,AT1G69530 loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found Expansin-A21 (Alpha-expansin-21) (OsEXP21) (OsEXPA21) (OsaEXPa1.21),Expansin-A4 (Alpha-expansin-4) (OsEXP4) (OsEXPA4) (OsaEXPa1.22),Expansin-A5 (Alpha-expansin-5) (OsEXP5) (OsEXPA5) (OsaEXPa1.20),Expansin-A6 (Alpha-expansin-6) (OsEXP6) (OsEXPA6) (OsaEXPa1.24),Expansin-A2 (Alpha-expansin-2) (OsEXP2) (OsEXPA2) (OsaEXPa1.23) (RiExB) (RiExC) Q10KN4,Q0DHB7,Q6ZGU9,Q9M4X7,Q40636 EXP21_ORYSJ,EXPA4_ORYSJ,EXPA5_ORYSJ,EXPA6_ORYSJ,EXPA2_ORYSJ EXPA21 EXP21 Os03g0377100 LOC_Os03g25990 OSJNBb0048D20.14,EXPA4 EXP4 Os05g0477600 LOC_Os05g39990 OsJ_018161 OsJ_18926 OSJNBa0018K15.5,EXPA5 EXP5 Os02g0744200 LOC_Os02g51040 OJ1118_G04.3 OJ1734_E02.30 OsJ_08358,EXPA6 EXP6 Os03g0336400 LOC_Os03g21820,EXPA2 EXP2 Os01g0823100 LOC_Os01g60770 OsJ_03905 P0031D02.10 P0485B12.42 DISRUPTION PHENOTYPE: Plants are smaller. {ECO:0000269|PubMed:12782731}. FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}.,FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Required for normal plant growth. May be required for rapid internodal elongation in deepwater rice during submergence. {ECO:0000269|PubMed:12782731}. ENOG411DVTH DGP2 O82497 DGP2_ARATH DAR GTPase 2, mitochondrial FUNCTION: GTPase that may function in mitochondrial ribosome assembly (Probable). {ECO:0000305|PubMed:16849600}. 42424 DAR GTPase 2, mitochondrial mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ribosome biogenesis [GO:0042254] locus:2139197; AT4G10650 ribosome biogenesis GTPase Expressed protein (Os10g0572000 protein) (Putative GTPase domain containing protein) Q8S7M9 Q8S7M9_ORYSJ Os10g0572000 LOC_Os10g42170 OsJ_32544 OSJNBa0095C07.33 OSNPB_100572000 ENOG411DVTI Q9LUD6 PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580, mitochondrial 46711 Pentatricopeptide repeat-containing protein At3g14580, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2089581; AT3G14580 Pentatricopeptide repeat-containing protein Os04g0618050 protein B9FCJ4 B9FCJ4_ORYSJ Os04g0618050 OsJ_16179 OSNPB_040618050 ENOG411DVTN JRG21,MOP10.14 Q9FFF6,Q9LY48,Q9SRM3,F4J670,A0A1P8BBY4,A0A1I9LLN9 DIOX5_ARATH,DIOX3_ARATH,DIOX6_ARATH,F4J670_ARATH,A0A1P8BBY4_ARATH,A0A1I9LLN9_ARATH Probable 2-oxoglutarate-dependent dioxygenase At5g05600 (EC 1.14.11.-),Probable 2-oxoglutarate-dependent dioxygenase JRG21 (EC 1.14.11.-) (Protein JASMONATE-REGULATED GENE 21),Probable 2-oxoglutarate-dependent dioxygenase At3g111800 (EC 1.14.11.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein,Jasmonate-regulated gene 21 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings have increased tolerance to the cytotoxic compound phenanthrene. {ECO:0000269|PubMed:27637093}. FUNCTION: Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins (By similarity). May be involved in the catabolism of cytotoxic polycyclic aromatic hydrocarbons (PAHs) (PubMed:27637093). {ECO:0000250|UniProtKB:Q96323, ECO:0000269|PubMed:27637093}.,FUNCTION: Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins. {ECO:0000250|UniProtKB:Q96323}. ARA:AT5G05600-MONOMER;,ARA:AT3G55970-MONOMER;,ARA:AT3G11180-MONOMER; 1.14.11.- 42177,41442,45620,46165,32930,34340 Probable 2-oxoglutarate-dependent dioxygenase At5g05600 (EC 1.14.11.-),Probable 2-oxoglutarate-dependent dioxygenase JRG21 (EC 1.14.11.-) (Protein JASMONATE-REGULATED GENE 21),Probable 2-oxoglutarate-dependent dioxygenase At3g111800 (EC 1.14.11.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein,Jasmonate-regulated gene 21 dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; cellular response to toxic substance [GO:0097237]; flavonoid biosynthetic process [GO:0009813]; response to karrikin [GO:0080167],dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; flavonoid biosynthetic process [GO:0009813],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] DEVELOPMENTAL STAGE: Expressed during pollen germination and pollen tube growth. {ECO:0000269|PubMed:18775970, ECO:0000269|PubMed:23791732}. locus:2169697;,locus:2082058;,locus:2074643; AT5G05600,AT3G55970,AT3G11180 oxidoreductase 2OG-Fe(II) oxygenase family protein Os05g0127500 protein (Putative leucoanthocyanidin dioxygenase) (cDNA clone:J013154G13, full insert sequence),Os01g0832600 protein (Putative anthocyanidin synthase),Os03g0289800 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (cDNA clone:001-024-H01, full insert sequence) (cDNA clone:J023003A10, full insert sequence) Q75IL5,Q5QLC8,Q10MY3 Q75IL5_ORYSJ,Q5QLC8_ORYSJ,Q10MY3_ORYSJ Os05g0127500 Os05g0127500 OsJ_16982 OSNPB_050127500 P0683F12.14,Os01g0832600 Os01g0832600 OsJ_03968 OSNPB_010832600 P0460C04.8,LOC_Os03g18030 Os03g0289800 OSNPB_030289800 ENOG411DVTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Acid_phosphat_A Os03g0689100 protein (Fragment) A0A0P0W1L9 A0A0P0W1L9_ORYSJ Os03g0689100 OSNPB_030689100 ENOG411DVTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_TTF NA NA NA NA NA NA NA ENOG411DVTS F17J6.9 Q93XW9 Q93XW9_ARATH Putative lysine decarboxylase family protein (Uncharacterized protein At1g50570) (Uncharacterized protein At1g50570; F17J6.9) 33972 Putative lysine decarboxylase family protein (Uncharacterized protein At1g50570) (Uncharacterized protein At1g50570; F17J6.9) locus:505006177; AT1G50575 Possible lysine decarboxylase Expressed protein (Os03g0587100 protein) (Possible lysine decarboxylase family protein, expressed) (cDNA clone:J033115B13, full insert sequence),Os03g0587100 protein (Fragment) Q6F2U6,A0A0P0VZN6 Q6F2U6_ORYSJ,A0A0P0VZN6_ORYSJ OSJNBa0010D22.29 Os03g0587100 LOC_Os03g39010 OSNPB_030587100,Os03g0587100 OSNPB_030587100 ENOG411DVTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0472700 protein (Fragment) A0A0P0WWI5,A0A0P0WWJ7 A0A0P0WWI5_ORYSJ,A0A0P0WWJ7_ORYSJ Os06g0472700 OSNPB_060472700 ENOG411DVTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate via the formation of 2-isopropylmaleate (By similarity) NA NA NA NA NA NA NA ENOG411DVTV EAAC,TAAC O65023,Q9M024 EAAC_ARATH,TAAC_ARATH Probable envelope ADP,ATP carrier protein, chloroplastic (Envelope ADP/ATP translocase),Thylakoid ADP,ATP carrier protein, chloroplastic (Thylakoid ADP/ATP translocase) DISRUPTION PHENOTYPE: Plants show a 30-40% reduction in the thylakoid ATP transport and metabolism. {ECO:0000269|PubMed:17261580}. 40% reduction in the thylakoid content as compared with WT pale green leaves of the taac mutant. Pale green leaves-C. Spetea-2007 FUNCTION: Transports adenine nucleotides. {ECO:0000250}.,FUNCTION: Specifically transports adenine nucleotides. Involved in the uptake of ATP into thylakoids in exchange for lumenal ADP. {ECO:0000269|PubMed:17261580}. 41718,45090 Probable envelope ADP,ATP carrier protein, chloroplastic (Envelope ADP/ATP translocase),Thylakoid ADP,ATP carrier protein, chloroplastic (Thylakoid ADP/ATP translocase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; thylakoid membrane [GO:0042651]; ATP transmembrane transporter activity [GO:0005347]; mitochondrial transport [GO:0006839]; response to nematode [GO:0009624],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; plastid envelope [GO:0009526]; thylakoid membrane [GO:0042651]; ATP transmembrane transporter activity [GO:0005347]; mitochondrial transport [GO:0006839]; photoprotection [GO:0010117]; photosystem II repair [GO:0010206] DEVELOPMENTAL STAGE: Expressed in dark-grown seedlings and remains stable throughout the greening process. Highest expression in developing green tissues and in leaves undergoing senescence or abiotic stress, with the exception of heat shock conditions that induced a drastic reduction of expression. {ECO:0000269|PubMed:17261580}. TISSUE SPECIFICITY: Highly expressed in developing photosynthetic organs such as leaves, flower buds and green siliques. Also detected in roots, flowers, mature leaves and stems. {ECO:0000269|PubMed:17261580}. locus:2074358;,locus:2149725; AT3G51870,AT5G01500 carrier protein Os01g0265200 protein (Putative peroxisomal Ca-dependent solute carrier) (cDNA clone:J023053G08, full insert sequence) Q9LD54 Q9LD54_ORYSJ Os01g0265200 OSNPB_010265200 P0453A06.32 P0499C11.14 ENOG411DVTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA eukaryotic translation initiation factor NA NA NA NA NA NA NA ENOG411DVTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Tryptamine hydroxycinnamoyltransferase 2 (OsTHT2) (EC 2.3.1.-),Tryptamine benzoyltransferase 1 (OsTBT1) (EC 2.3.1.-),Tryptamine hydroxycinnamoyltransferase 1 (OsTHT1) (EC 2.3.1.-),Tryptamine benzoyltransferase 2 (OsTBT2) (EC 2.3.1.-),Os03g0185700 protein (Transferase family protein, expressed) (cDNA clone:002-153-B05, full insert sequence),Os11g0643200 protein,Os10g0330900 protein Q8LMI4,Q2R0K3,Q338X7,Q2R0J4,Q10QS0,A0A0P0Y562,A0A0P0XTV6 THT2_ORYSJ,TBT1_ORYSJ,THT1_ORYSJ,TBT2_ORYSJ,Q10QS0_ORYSJ,A0A0P0Y562_ORYSJ,A0A0P0XTV6_ORYSJ THT2 Os10g0380100 LOC_Os10g23820 OSJNBa0032N04.1,TBT1 Os11g0642400 LOC_Os11g42290,THT1 Os10g0379100 LOC_Os10g23310,TBT2 Os11g0643100 LOC_Os11g42370,Os03g0185700 LOC_Os03g08720 Os03g0185700 OSNPB_030185700,Os11g0643200 OSNPB_110643200,Os10g0330900 OSNPB_100330900 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to tryptamine, to produce coumaroyl tryptamine. Serotonin and tyramine serve as acyl acceptors in vitro. Can use caffeoyl-CoA, and to a lesser extent feruloyl-CoA, as acyl donors. {ECO:0000269|PubMed:27354554}.,FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from benzoyl-CoA to tryptamine, to produce benzoyl tryptamine. Serotonin and tyramine serve as acyl acceptors in vitro. Can use p-coumaroyl-CoA, and to a lesser extent caffeoyl-CoA, as acyl donors. {ECO:0000269|PubMed:27354554}.,FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to tryptamine, to produce coumaroyl tryptamine. Serotonin, tyramine, and to a lesser extent agmatine, serve as acyl acceptors in vitro. Can use caffeoyl-CoA, and to a lesser extent benzoyl-CoA, as acyl donors. {ECO:0000269|PubMed:27354554}.,FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from benzoyl-CoA to tryptamine, to produce benzoyl tryptamine. Serotonin and tyramine serve as acyl acceptors in vitro. Specific for benzoyl-CoA as acyl donor. Has no activity with p-coumaroyl-CoA, caffeoyl-CoA, or feruloyl-CoA as acyl donors. {ECO:0000269|PubMed:27354554}. ENOG411DVTU O82638,F4JVV9 O82638_ARATH,F4JVV9_ARATH At4g32960 (BRISC/BRCA1-A complex protein) (Uncharacterized protein AT4g32960),BRISC/BRCA1-A complex protein 29424,71199 At4g32960 (BRISC/BRCA1-A complex protein) (Uncharacterized protein AT4g32960),BRISC/BRCA1-A complex protein BRCA1-A complex [GO:0070531]; BRISC complex [GO:0070552]; positive regulation of DNA repair [GO:0045739] locus:2123802;,locus:2123812; AT4G32960,AT4G32970 NA Os06g0150100 protein (cDNA clone:J023002O16, full insert sequence) Q5VND0 Q5VND0_ORYSJ Os06g0150100 Os06g0150100 OSNPB_060150100 P0710H01.11 ENOG411DVTZ LSF2 Q9SRK5 LSF2_ARATH Phosphoglucan phosphatase LSF2, chloroplastic (EC 3.1.3.-) (Phosphoglucan phosphatase like sex Four2) (Protein LIKE SEX4 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but starch of mutant plants contains high levels of C3-bound phosphate. {ECO:0000269|PubMed:22100529}. FUNCTION: Starch-associated phosphoglucan phosphatase that selectively dephosphorylates the glucan C3 position. Probably participates in the regulation of starch degradation. {ECO:0000269|PubMed:22100529, ECO:0000269|PubMed:23832589, ECO:0000269|PubMed:26231210}. ARA:AT3G10940-MONOMER; 3.1.3.- 32087 Phosphoglucan phosphatase LSF2, chloroplastic (EC 3.1.3.-) (Phosphoglucan phosphatase like sex Four2) (Protein LIKE SEX4 2) chloroplast [GO:0009507]; carbohydrate phosphatase activity [GO:0019203]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; starch binding [GO:2001070]; sugar-phosphatase activity [GO:0050308]; phosphorylated carbohydrate dephosphorylation [GO:0046838]; starch catabolic process [GO:0005983] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:22100529}. locus:2085542; AT3G10940 Dual specificity phosphatase catalytic domain containing protein expressed Dual specificity phosphatase, catalytic domain containing protein, expressed (Os12g0112500 protein),Dual specificity phosphatase, catalytic domain containing protein, expressed (Os11g0113100 protein) (cDNA clone:J023127J23, full insert sequence) Q2QYN1,Q2RBF6 Q2QYN1_ORYSJ,Q2RBF6_ORYSJ Os12g0112500 LOC_Os12g02120 OSNPB_120112500,LOC_Os11g02180 Os11g0113100 OSNPB_110113100 ENOG411DVTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RuBisCO catalyzes two reactions the carboxylation of D- ribulose 15-bisphosphate the primary event in carbon dioxide fixation as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity) Ribulose bisphosphate carboxylase small chain A, chloroplastic (RuBisCO small subunit A) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain, chloroplastic (Ribulose bisphosphate carboxylase small chain C) (RuBisCO small subunit) (RuBisCO small subunit C) (EC 4.1.1.39),Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39),Os12g0291200 protein P18566,Q0INY7,Q2QTJ1,Q2QTJ7,A0A0P0Y9S5 RBS2_ORYSJ,RBS1_ORYSJ,Q2QTJ1_ORYSJ,Q2QTJ7_ORYSJ,A0A0P0Y9S5_ORYSJ RBCS-A Os12g0291100 LOC_Os12g19381 LOC_Os12g19394,RBCS RBCS-C Os12g0274700 LOC_Os12g17600 OsJ_016909 OsJ_17688,Os12g0292400 LOC_Os12g19470 Os12g0292400 OsJ_35820 OSNPB_120292400,LOC_Os12g19394 Os12g0291400 OsJ_35814 OSNPB_120291400,Os12g0291200 OSNPB_120291200 FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity). {ECO:0000250}.,FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. {ECO:0000256|RuleBase:RU003627}. MISCELLANEOUS: NADPH and 6-phosphogluconate function as positive effectors to promote enzyme activation. {ECO:0000305|PubMed:22609438}. ENOG411DVTY APC1,EMB2771 Q9FFF9,A0A1P8BDT7,A0A1P8BDT3 APC1_ARATH,A0A1P8BDT7_ARATH,A0A1P8BDT3_ARATH Anaphase-promoting complex subunit 1 (Cyclosome subunit 1) (Protein EMBRYO DEFECTIVE 2771),E3 ubiquitin ligase Embryo defective; Cotyledon-D. Meinke-2007 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 186276,186344,200435 Anaphase-promoting complex subunit 1 (Cyclosome subunit 1) (Protein EMBRYO DEFECTIVE 2771),E3 ubiquitin ligase anaphase-promoting complex [GO:0005680]; auxin homeostasis [GO:0010252]; cell cycle [GO:0007049]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; plant ovule development [GO:0048481]; protein ubiquitination [GO:0016567],anaphase-promoting complex [GO:0005680]; integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2169657; AT5G05560 anaphase-promoting complex subunit NA NA NA NA NA NA NA ENOG411ECAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase Os02g0173600 protein Q0E3I3 Q0E3I3_ORYSJ Os02g0173600 Os02g0173600 OSNPB_020173600 ENOG411DT8H TIF4A-1,TIF4A-2,EIF4A1,EIF4A-2 P41376,P41377,A0A1I9LSZ7,F4HV96,F4JEL4,A8MRZ7,F4JEL5 IF4A1_ARATH,IF4A2_ARATH,A0A1I9LSZ7_ARATH,F4HV96_ARATH,F4JEL4_ARATH,A8MRZ7_ARATH,F4JEL5_ARATH Eukaryotic initiation factor 4A-1 (eIF-4A-1) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-1) (DEAD-box ATP-dependent RNA helicase 4),Eukaryotic initiation factor 4A-2 (eIF-4A-2) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-2) (DEAD-box ATP-dependent RNA helicase 19),Eukaryotic translation initiation factor 4A1,Eif4a-2 FUNCTION: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon.,FUNCTION: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity). {ECO:0000250}. R-ATH-156827;R-ATH-72662;R-ATH-72702; 3.6.4.13 46704,46763,47458,46195,46950,45701,46137 Eukaryotic initiation factor 4A-1 (eIF-4A-1) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-1) (DEAD-box ATP-dependent RNA helicase 4),Eukaryotic initiation factor 4A-2 (eIF-4A-2) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-2) (DEAD-box ATP-dependent RNA helicase 19),Eukaryotic translation initiation factor 4A1,Eif4a-2 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; translation initiation factor activity [GO:0003743]; regulation of gene expression [GO:0010468]; RNA secondary structure unwinding [GO:0010501]; translational initiation [GO:0006413],cytosol [GO:0005829]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; regulation of gene expression [GO:0010468]; response to cadmium ion [GO:0046686]; RNA secondary structure unwinding [GO:0010501]; translational initiation [GO:0006413],ATP binding [GO:0005524]; helicase activity [GO:0004386]; translation initiation factor activity [GO:0003743],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; translation initiation factor activity [GO:0003743]; response to cadmium ion [GO:0046686]; translational initiation [GO:0006413] TISSUE SPECIFICITY: Highly expressed in the whole plant. {ECO:0000269|PubMed:17168887}.,TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in flowers, young leaves and roots. {ECO:0000269|PubMed:17168887}. locus:2020078;,locus:2088237; AT3G13920,AT1G54270 eukaryotic initiation factor Eukaryotic initiation factor 4A-1 (eIF-4A-1) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-1) (DEAD-box ATP-dependent RNA helicase 4),Eukaryotic initiation factor 4A-3 (eIF-4A-3) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-3) (DEAD-box ATP-dependent RNA helicase 23) (eIF4A-2),Os06g0701100 protein (Fragment) P35683,Q6Z2Z4,A0A0N7KMN9 IF4A1_ORYSJ,IF4A3_ORYSJ,A0A0N7KMN9_ORYSJ Os06g0701100 LOC_Os06g48750 OsJ_22532 P0468G03.33 P0596H10.2,Os02g0146600 LOC_Os02g05330 OJ1008_C03.10 OsJ_05367,Os06g0701100 OSNPB_060701100 FUNCTION: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity). {ECO:0000250}. ENOG411EH07 O80481 O80481_ARATH Chaperone DnaJ-domain superfamily protein (T12M4.3 protein) 16146 Chaperone DnaJ-domain superfamily protein (T12M4.3 protein) locus:2195281; AT1G09260 DnaJ domain NA NA NA NA NA NA NA ENOG411EAQX Q9LHD3 FB190_ARATH F-box protein At3g28330 45995 F-box protein At3g28330 AT3G28330 NA NA NA NA NA NA NA NA ENOG411E9IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DPMV ACR1 Q9FHP1,A8MQZ6,A0A1P8BAX4 ACR1_ARATH,A8MQZ6_ARATH,A0A1P8BAX4_ARATH ACT domain-containing protein ACR1 (Protein ACT DOMAIN REPEATS 1),ACT domain repeat 1 FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 52977,47086,40137 ACT domain-containing protein ACR1 (Protein ACT DOMAIN REPEATS 1),ACT domain repeat 1 nucleus [GO:0005634]; amino acid binding [GO:0016597] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:12481063}. locus:2152094; AT5G65890 ACT domain Os03g0729800 protein A0A0P0W345 A0A0P0W345_ORYSJ Os03g0729800 OSNPB_030729800 ENOG411EGAQ Q9LTZ3 Q9LTZ3_ARATH Hop-interacting protein 18522 Hop-interacting protein NA NA NA NA NA NA NA NA ENOG411EICF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DPWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 family protein, expressed (Os11g0635500 protein) (cDNA clone:J013112D07, full insert sequence),Os06g0641800 protein (Fragment),Os06g0642200 protein,Os11g0635300 protein Q2R0R2,Q0DAN9,A0A0P0WZ86,A0A0P0Y4U3 Q2R0R2_ORYSJ,Q0DAN9_ORYSJ,A0A0P0WZ86_ORYSJ,A0A0P0Y4U3_ORYSJ LOC_Os11g41710 Os11g0635500 OSNPB_110635500,Os06g0641800 Os06g0641800 OSNPB_060641800,Os06g0642200 OSNPB_060642200,Os11g0635300 OSNPB_110635300 ENOG411DRDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 31 (OsC3H31),Zinc finger CCCH domain-containing protein 14 (OsC3H14),Zinc finger CCCH domain-containing protein 44 (OsC3H44),Os06g0618100 protein Q7XPK1,Q7F8R0,Q69XQ3,A0A0P0WZ20 C3H31_ORYSJ,C3H14_ORYSJ,C3H44_ORYSJ,A0A0P0WZ20_ORYSJ Os04g0665700 LOC_Os04g57010 OsJ_16534 OSJNBa0087O24.9,Os02g0194200 LOC_Os02g10080 OsJ_005555 P0437H03.134,Os06g0618100 LOC_Os06g41384 P0012B02.7-1,Os06g0618100 OSNPB_060618100 ENOG411DVKA MBG8.4 Q0WV47,Q8H1R9,F4JIR5 Q0WV47_ARATH,Q8H1R9_ARATH,F4JIR5_ARATH Uncharacterized protein At5g54780 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Uncharacterized protein At4g27100 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein R-ATH-8854214; 49407,50160,49796 Uncharacterized protein At5g54780 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Uncharacterized protein At4g27100 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; intracellular [GO:0005622]; mitochondrion [GO:0005739]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338],endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2160145;,locus:2136442; AT5G54780,AT4G27100 TBC1 domain family member 15-like GTPase activating protein-like (Os07g0525400 protein),Os02g0810500 protein (Putative GTPase activating protein) (cDNA clone:J023102D17, full insert sequence),Os11g0587500 protein Q69UB8,Q6K986,Q0IRX9 Q69UB8_ORYSJ,Q6K986_ORYSJ,Q0IRX9_ORYSJ Os07g0525400 Os07g0525400 OSNPB_070525400 P0678G09.17,Os02g0810500 OJ1116_E04.6 OSNPB_020810500,Os11g0587500 OSNPB_110587500 ENOG411ECZ8 SEC1A Q9LPC3,Q9SA99 BBE1_ARATH,BBE2_ARATH Berberine bridge enzyme-like 1 (AtBBE-like 1) (EC 1.1.1.-) (Protein SIMILAR TO ELECTRON CAREER 1A) (AtSEC1A),Berberine bridge enzyme-like 2 (AtBBE-like 2) (EC 1.1.1.-) ARA:AT1G01980-MONOMER;,ARA:AT1G11770-MONOMER; 1.1.1.- 60103,59794 Berberine bridge enzyme-like 1 (AtBBE-like 1) (EC 1.1.1.-) (Protein SIMILAR TO ELECTRON CAREER 1A) (AtSEC1A),Berberine bridge enzyme-like 2 (AtBBE-like 2) (EC 1.1.1.-) extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] TISSUE SPECIFICITY: Accumulates in cell walls of etiolated hypocotyls. {ECO:0000269|PubMed:18796151}. locus:2025452;,locus:2027362; AT1G01980,AT1G11770 Berberine and berberine like NA NA NA NA NA NA NA ENOG411ECZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411ECZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411ECZ7 Q9LV46,F4J7Q0 Q9LV46_ARATH,F4J7Q0_ARATH Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 26954,25519 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein cytoplasm [GO:0005737]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2091767; AT3G24570 Mpv17 / PMP22 family NA NA NA NA NA NA NA ENOG411ECZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os01g0817800 protein (cDNA clone:J033068H02, full insert sequence),Os01g0817800 protein (Fragment) Q94DV6,A0A0P0V9M9 Q94DV6_ORYSJ,A0A0P0V9M9_ORYSJ Os01g0817800 Os01g0817800 B1148D12.29 OsJ_03875 OSNPB_010817800 P0454H12.18,Os01g0817800 OSNPB_010817800 ENOG411ECZ5 BHLH82 Q9LSQ3 BH082_ARATH Transcription factor bHLH82 (Basic helix-loop-helix protein 82) (AtbHLH82) (bHLH 82) (Transcription factor EN 96) (bHLH transcription factor bHLH082) 31470 Transcription factor bHLH82 (Basic helix-loop-helix protein 82) (AtbHLH82) (bHLH 82) (Transcription factor EN 96) (bHLH transcription factor bHLH082) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; root hair cell development [GO:0080147]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:16581911}. locus:2147760; AT5G58010 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411ECZ3 HSFA1E Q9SCW5 HFA1E_ARATH Heat stress transcription factor A-1e (AtHsfA1e) (AtHsf-06) (Heat shock factor protein 2) (HSF 2) (Heat shock transcription factor 2) (HSTF 2) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 51963 Heat stress transcription factor A-1e (AtHsfA1e) (AtHsf-06) (Heat shock factor protein 2) (HSF 2) (Heat shock transcription factor 2) (HSTF 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2075447; AT3G02990 Transcription factor NA NA NA NA NA NA NA ENOG411ECZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 16 NA NA NA NA NA NA NA ENOG411ECZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECZN PCFS1,PCFS5 Q9C710,Q9FIX8 PCFS1_ARATH,PCFS5_ARATH Polyadenylation and cleavage factor homolog 1,Polyadenylation and cleavage factor homolog 5 R-ATH-72163; 46597,46049 Polyadenylation and cleavage factor homolog 1,Polyadenylation and cleavage factor homolog 5 cytoplasm [GO:0005737]; mRNA cleavage factor complex [GO:0005849]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA polymerase II core binding [GO:0000993]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; termination of RNA polymerase II transcription [GO:0006369] locus:2029002;,locus:2158362; AT1G66500,AT5G43620 Inherit from KOG: PCF11 cleavage and polyadenylation factor subunit homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411ECZM ADS2 Q9SID2 ADS2_ARATH Delta-9 acyl-lipid desaturase 2 (EC 1.14.19.-) FUNCTION: Involved in delta-9 desaturation of fatty acids. {ECO:0000269|PubMed:15240892, ECO:0000269|PubMed:9559566}. MISCELLANEOUS: Substrate specificity shifts from delta-9 to delta-7 desaturation when the protein is retargeted to the chloroplast. PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. ARA:AT2G31360-MONOMER;MetaCyc:AT2G31360-MONOMER; R-ATH-75105; 1.14.19.- 36376 Delta-9 acyl-lipid desaturase 2 (EC 1.14.19.-) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; unsaturated fatty acid biosynthetic process [GO:0006636]; very long-chain fatty acid biosynthetic process [GO:0042761] TISSUE SPECIFICITY: Strongly expressed in flowers, roots, leaves, seedpods, and inflorescence meristems. {ECO:0000269|PubMed:9559566}. locus:2061260; AT2G31360 ADS2 ADS2 (16 0Delta9 Arabidopsis desaturase 2) NA NA NA NA NA NA NA ENOG411ECZJ WRKY54 Q93WU8 WRK54_ARATH Probable WRKY transcription factor 54 (WRKY DNA-binding protein 54) Double mutant wrky54 wrky70 displays enhanced susceptibility to Psm ES4326 infection. FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 38645 Probable WRKY transcription factor 54 (WRKY DNA-binding protein 54) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of leaf senescence [GO:1900056]; regulation of defense response [GO:0031347]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] locus:2064806; AT2G40750 WRKY NA NA NA NA NA NA NA ENOG411ECZK SUVH7,SUVH8 Q9C5P1,Q9C5P0 SUVH7_ARATH,SUVH8_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7) (H3-K9-HMTase 7) (Protein SET DOMAIN GROUP 17) (Suppressor of variegation 3-9 homolog protein 7) (Su(var)3-9 homolog protein 7),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 8) (H3-K9-HMTase 8) (Protein SET DOMAIN GROUP 21) (Suppressor of variegation 3-9 homolog protein 8) (Su(var)3-9 homolog protein 8) FUNCTION: Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. R-ATH-3214841; 2.1.1.43 77632,84528 Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7) (H3-K9-HMTase 7) (Protein SET DOMAIN GROUP 17) (Suppressor of variegation 3-9 homolog protein 7) (Su(var)3-9 homolog protein 7),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 8) (H3-K9-HMTase 8) (Protein SET DOMAIN GROUP 21) (Suppressor of variegation 3-9 homolog protein 8) (Su(var)3-9 homolog protein 8) chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone binding [GO:0042393]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270],chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone binding [GO:0042393]; histone methyltransferase activity [GO:0042054]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; leaf development [GO:0048366]; regulation of cell size [GO:0008361]; regulation of gene expression, epigenetic [GO:0040029] locus:2030953;,locus:2047266; AT1G17770,AT2G24740 su(var)3-9 homolog NA NA NA NA NA NA NA ENOG411ECZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactose binding lectin domain NA NA NA NA NA NA NA ENOG411ECZI AGL52,AGL78 Q9SUT6,Q9FKQ5 Q9SUT6_ARATH,Q9FKQ5_ARATH AGAMOUS-like 52 (MADS-box protein AGL52) (Uncharacterized protein AT4g11250),AGAMOUS-like 78 (MADS-box protein AGL78) 37834,38889 AGAMOUS-like 52 (MADS-box protein AGL52) (Uncharacterized protein AT4g11250),AGAMOUS-like 78 (MADS-box protein AGL78) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2128268;,locus:2168247; AT4G11250,AT5G65330 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411ECZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411ECZG IDH3 O81796 IDH3_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial (EC 1.1.1.41) (IDH-III) (Isocitric dehydrogenase 3) (NAD(+)-specific ICDH 3) FUNCTION: Performs an essential role in the oxidative function of the citric acid cycle. {ECO:0000250}. R-ATH-71403; 1.1.1.41; 1.1.1.41 39957 Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial (EC 1.1.1.41) (IDH-III) (Isocitric dehydrogenase 3) (NAD(+)-specific ICDH 3) apoplast [GO:0048046]; mitochondrion [GO:0005739]; isocitrate dehydrogenase (NAD+) activity [GO:0004449]; metal ion binding [GO:0046872]; isocitrate metabolic process [GO:0006102]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Mainly expressed at a low level in pollen. {ECO:0000269|PubMed:16527867}. locus:2127993; AT4G35650 Isocitrate/isopropylmalate dehydrogenase NA NA NA NA NA NA NA ENOG411ECZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: fission 1 Mitochondrial fission 1 protein Q0DIK0,Q5JKW7 Q0DIK0_ORYSJ,Q5JKW7_ORYSJ Os05g0383000 Os05g0383000 OsJ_18376 OSNPB_050383000,Os01g0951800 Os01g0951800 B1147A04.42 OsJ_04778 OSNPB_010951800 FUNCTION: Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes. {ECO:0000256|PIRNR:PIRNR008835}. ENOG411ECZE Q8LES5 Q8LES5_ARATH At5g20030 (Plant Tudor-like RNA-binding protein) 36638 At5g20030 (Plant Tudor-like RNA-binding protein) locus:2147730; AT5G20030 Agenet domain NA NA NA NA NA NA NA ENOG411ECZB HVA22B Q9SYX7 HA22B_ARATH HVA22-like protein b (AtHVA22b) 18742 HVA22-like protein b (AtHVA22b) integral component of membrane [GO:0016021]; hyperosmotic salinity response [GO:0042538]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Predominantly expressed in flower buds. {ECO:0000269|PubMed:12081371}. locus:2154139; AT5G62490 TB2/DP1 HVA22 family NA NA NA NA NA NA NA ENOG411ECZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Regulator of nonsense transcripts NA NA NA NA NA NA NA ENOG411ECZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os05g0546800 protein (cDNA clone:J013111O17, full insert sequence),Os05g0545900 protein Q6L5A2,A0A0P0WPW9 Q6L5A2_ORYSJ,A0A0P0WPW9_ORYSJ Os05g0546800 OJ1345_B12.12 OsJ_19437 OSNPB_050546800,Os05g0545900 OSNPB_050545900 ENOG411ECZX MYB25,F1I16_140 O04192,Q9LDW5 MYB25_ARATH,Q9LDW5_ARATH Transcription factor MYB25 (Myb-related protein 25) (AtMYB25),MYB transcription factor-like protein (Myb domain protein 109) (Putative transcription factor MYB109) DISRUPTION PHENOTYPE: Abnormal male gametophyte (pollen) development including deformed cell wall, two-celled phenotype (one regular vegetative nucleus and one sperm cell-like nucleus, both in center) and semtimes leading to abortion. {ECO:0000269|PubMed:22101548}. FUNCTION: Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. 40912,43537 Transcription factor MYB25 (Myb-related protein 25) (AtMYB25),MYB transcription factor-like protein (Myb domain protein 109) (Putative transcription factor MYB109) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; pollen development [GO:0009555]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651] locus:2061242;,locus:2078961; AT2G39880,AT3G55730 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411ECZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411ECZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) NA NA NA NA NA NA NA ENOG411ECZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411ECZR MPK5 Q39025 MPK5_ARATH Mitogen-activated protein kinase 5 (AtMPK5) (MAP kinase 5) (EC 2.7.11.24) R-ATH-110056;R-ATH-112409;R-ATH-112411;R-ATH-198753;R-ATH-198765;R-ATH-202670;R-ATH-2559582;R-ATH-3371453;R-ATH-375165;R-ATH-442742;R-ATH-444257;R-ATH-445144;R-ATH-5673001;R-ATH-5674135;R-ATH-5674499;R-ATH-6798695;R-ATH-881907; 2.7.11.24; 2.7.11.24 43207 Mitogen-activated protein kinase 5 (AtMPK5) (MAP kinase 5) (EC 2.7.11.24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468] locus:2128263; AT4G11330 kinase 5' NA NA NA NA NA NA NA ENOG411ECZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os11g0594500 protein Q2R1S8 Q2R1S8_ORYSJ Os11g0594500 LOC_Os11g38190 OsJ_34465 OSNPB_110594500 ENOG411ECZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAP domain NA NA NA NA NA NA NA ENOG411ECZQ NFYB1,NF-YB1 Q9SLG0,F4ITZ0,B6EUB6,Q3EBK1,F4ITZ6,F4ITZ4 NFYB1_ARATH,F4ITZ0_ARATH,B6EUB6_ARATH,Q3EBK1_ARATH,F4ITZ6_ARATH,F4ITZ4_ARATH Nuclear transcription factor Y subunit B-1 (AtNF-YB-1) (Transcriptional activator HAP3A),Nuclear factor Y, subunit B1,AT2G38880 protein (Nuclear factor Y, subunit B1) Same flowering time as wild-type plants. FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. 15181,18003,16896,15007,12446,14939 Nuclear transcription factor Y subunit B-1 (AtNF-YB-1) (Transcriptional activator HAP3A),Nuclear factor Y, subunit B1,AT2G38880 protein (Nuclear factor Y, subunit B1) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],CCAAT-binding factor complex [GO:0016602]; nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to water deprivation [GO:0009414],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. locus:2064996; AT2G38880 Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411ECMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retinal pigment epithelial membrane protein NA NA NA NA NA NA NA ENOG411DVKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ranBP2-type zinc finger protein NA NA NA NA NA NA NA ENOG411EF2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 20 catalytic domain NA NA NA NA NA NA NA ENOG411EMJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DPWB Q9SY74,A0A1P8AVS1 C3H5_ARATH,A0A1P8AVS1_ARATH Zinc finger CCCH domain-containing protein 5 (AtC3H5),Zinc finger C-x8-C-x5-C-x3-H type family protein R-ATH-72165; 89065,88089 Zinc finger CCCH domain-containing protein 5 (AtC3H5),Zinc finger C-x8-C-x5-C-x3-H type family protein spliceosomal complex [GO:0005681]; U2AF [GO:0089701]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; pre-mRNA 3'-splice site binding [GO:0030628]; mRNA splicing, via spliceosome [GO:0000398],U2AF [GO:0089701]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398] locus:2012843; AT1G10320 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 16 (OsC3H16) Q6YVX9 C3H16_ORYSJ Os02g0557500 LOC_Os02g35150 OSJNBb0038F20.8 ENOG411DQ0M CLT2,CLT1,CLT3 A1L4X0,Q058P6,Q8RWL5,A0A1P8BE74,A0A1P8B8T5,A0A1P8B8S9,F4K139 CLT2_ARATH,CLT1_ARATH,CLT3_ARATH,A0A1P8BE74_ARATH,A0A1P8B8T5_ARATH,A0A1P8B8S9_ARATH,F4K139_ARATH Protein CLT2, chloroplastic (CRT-like transporter 2) (Chloroquine-resistance transporter-like transporter 2),Protein CLT1, chloroplastic (CRT-like transporter 1) (Chloroquine-resistance transporter-like transporter 1),Protein CLT3, chloroplastic (CRT-like transporter 3) (Chloroquine-resistance transporter-like transporter 3),CRT (Chloroquine-resistance transporter)-like transporter 3,CRT (Chloroquine-resistance transporter)-like transporter 2,CRT (Chloroquine-resistance transporter)-like transporter 1 DISRUPTION PHENOTYPE: No visible phenotype. Clt1, clt3 and clt3 triple mutants are more sensitive to Cd(2+), have a decreased level of cytosolic GSH, an altered systemic acquired resistance response and are more sensitive to Phytophthora infection (PubMed:20080670). Clt1, clt3 and clt3 triple mutants have decreased lateral root densities (PubMed:24204368). {ECO:0000269|PubMed:20080670, ECO:0000269|PubMed:24204368}.,DISRUPTION PHENOTYPE: No visible phenotype, but resistance to L-buthionine-SR-sulfoximine (BSO), an inhibitor of GSH1. Clt1, clt3 and clt3 triple mutants are more sensitive to Cd(2+), have a decreased level of cytosolic GSH, an altered systemic acquired resistance response and are more sensitive to Phytophthora infection (PubMed:20080670). Clt1, clt3 and clt3 triple mutants have decreased lateral root densities (PubMed:24204368). {ECO:0000269|PubMed:20080670, ECO:0000269|PubMed:24204368}. FUNCTION: Involved in thiol transport from the plastid to the cytosol. Transports probably both glutathione (GSH) and its precursor, gamma-glutamylcysteine (gamma-EC). {ECO:0000269|PubMed:20080670}.,FUNCTION: Involved in thiol transport from the plastid to the cytosol. Transports probably both glutathione (GSH) and its precursor, gamma-glutamylcysteine (gamma-EC). Exhibits some functional redundancy with CLT3 in maintaining the root GSH pool. {ECO:0000269|PubMed:20080670}.,FUNCTION: Involved in thiol transport from the plastid to the cytosol. Transports probably both glutathione (GSH) and its precursor, gamma-glutamylcysteine (gamma-EC). Exhibits some functional redundancy with CLT1 in maintaining the root GSH pool. {ECO:0000269|PubMed:20080670}. 46685,47925,48469,33747,32304,34227,55024 Protein CLT2, chloroplastic (CRT-like transporter 2) (Chloroquine-resistance transporter-like transporter 2),Protein CLT1, chloroplastic (CRT-like transporter 1) (Chloroquine-resistance transporter-like transporter 1),Protein CLT3, chloroplastic (CRT-like transporter 3) (Chloroquine-resistance transporter-like transporter 3),CRT (Chloroquine-resistance transporter)-like transporter 3,CRT (Chloroquine-resistance transporter)-like transporter 2,CRT (Chloroquine-resistance transporter)-like transporter 1 chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; defense response to oomycetes [GO:0002229]; glutathione transport [GO:0034635]; response to cadmium ion [GO:0046686],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; transport [GO:0006810],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; defense response to oomycetes [GO:0002229]; glutathione transport [GO:0034635]; response to cadmium ion [GO:0046686],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plastid [GO:0009536]; defense response to oomycetes [GO:0002229]; glutathione transport [GO:0034635]; response to cadmium ion [GO:0046686] locus:2136032;,locus:2177008;,locus:2150250; AT4G24460,AT5G19380,AT5G12170 crt homolog 1-like Expressed protein (Os03g0199000 protein) (cDNA clone:J023145E02, full insert sequence),Expressed protein (Os12g0511300 protein) (cDNA clone:002-149-E06, full insert sequence),Os01g0955700 protein Q10QF0,Q2QQ06,A0A0P0VCX8 Q10QF0_ORYSJ,Q2QQ06_ORYSJ,A0A0P0VCX8_ORYSJ Os03g0199000 LOC_Os03g10230 OSNPB_030199000,Os12g0511300 LOC_Os12g32650 Os12g0511300 OsJ_36259 OSNPB_120511300,Os01g0955700 OSNPB_010955700 ENOG411EMJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA NA NA NA NA NA NA NA ENOG411EIF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWKR WIP2,WIP1 Q9FH18,P0CB21,Q8GXA4 WIP2_ARATH,Y4645_ARATH,WIP1_ARATH WPP domain-interacting protein 2,Uncharacterized protein At4g26450,WPP domain-interacting protein 1 When tested by immunofluorescence for RanGAP1 localization no difference from wild-type plants was detected.,Both endogenous RanGAP1 and RanGAP1-GFP were absent from the nuclear envelope in root-tip cells of the triple mutant.,Mutant plants had no observable defect in growth or development under standard laboratory conditions and no change in auxin sensitivity was observed in a standard root-elongation assay. FUNCTION: Mediates and enhances the nuclear envelope docking of RANGAP proteins mediated by WIT1 and WIT2 in the undifferentiated cells of root tips (PubMed:17600715). As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (PubMed:25759303). {ECO:0000269|PubMed:17600715, ECO:0000269|PubMed:25759303}.,FUNCTION: Mediates and enhances the nuclear envelope docking of RANGAP proteins mediated by WIT1 and WIT2 in the undifferentiated cells of root tips (PubMed:17600715, PubMed:18591351). As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (PubMed:25759303). {ECO:0000269|PubMed:17600715, ECO:0000269|PubMed:18591351, ECO:0000269|PubMed:25759303}. 56514,77533,53902 WPP domain-interacting protein 2,Uncharacterized protein At4g26450,WPP domain-interacting protein 1 cell plate [GO:0009504]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; nucleus organization [GO:0006997],cell plate [GO:0009504]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; protein heterodimerization activity [GO:0046982]; nucleus organization [GO:0006997] DEVELOPMENTAL STAGE: First observed in roots and cotyledons of young developing seedlings. Later confined to root tips and vascular tissue around the shoot apex. In flowers, detected in the stamens and at the senescence region of developing siliques. {ECO:0000269|PubMed:17600715}.,DEVELOPMENTAL STAGE: First observed in roots and cotyledons of young developing seedlings. Later confined to root tips, vascular tissue around the shoot apex, and in young leaf primodia. In flowers, detected in the stamens and at the senescence region of developing siliques. {ECO:0000269|PubMed:17600715}. TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269|PubMed:17600715}. locus:2156440;,locus:2131433;,locus:5019474842; AT5G56210,AT4G26450,AT4G26455 WPP domain-interacting protein Os08g0497900 protein,Os09g0481300 protein Q7F8T8,A0A0P0XN73 Q7F8T8_ORYSJ,A0A0P0XN73_ORYSJ Os08g0497900 Os08g0497900 OSNPB_080497900 P0026F07.22,Os09g0481300 OSNPB_090481300 ENOG411DWKS IDM2 Q8RWL4 IDM2_ARATH Increased DNA methylation 2 (Alpha-crystallin domain-containing protein 39.4) (AtAcd39.4) (Protein ROS5) (Repressor of silencing 5) DISRUPTION PHENOTYPE: No visible growth or developmental defects under normal growth conditions (PubMed:24920332). DNA hypermethylation (PubMed:25002145). {ECO:0000269|PubMed:24920332, ECO:0000269|PubMed:25002145}. FUNCTION: Prevents DNA hypermethylation and transcriptional silencing of transgenes and of some endogenous genes (PubMed:25002145, PubMed:24920332). May act as a molecular chaperone of IDM1, regulating its H3K18 acetylation activity (PubMed:25002145, PubMed:24920332). {ECO:0000269|PubMed:24920332, ECO:0000269|PubMed:25002145}. 39395 Increased DNA methylation 2 (Alpha-crystallin domain-containing protein 39.4) (AtAcd39.4) (Protein ROS5) (Repressor of silencing 5) nucleoplasm [GO:0005654]; nucleus [GO:0005634]; DNA demethylation [GO:0080111]; histone H3-K18 acetylation [GO:0043971]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in cotyledons and hypocotyls in young seedlings. {ECO:0000269|PubMed:24920332}. locus:2010945; AT1G54840 NA NA NA NA NA NA NA NA ENOG411DWKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAB Os01g0667600 protein (Putative GTP-binding protein Rab11b) (cDNA clone:J013063J15, full insert sequence) Q8RZ83 Q8RZ83_ORYSJ Os01g0667600 Os01g0667600 OsJ_02946 OSJNBb0063G05.27 OSNPB_010667600 ENOG411DWKQ EXO70E2 Q9FNR3 E70E2_ARATH Exocyst complex component EXO70E2 (AtExo70e2) (Exocyst subunit Exo70 family protein E2) DISRUPTION PHENOTYPE: Unability to recruit a number of exocyst subunits to the exocyst-positive organelle (EXPO). {ECO:0000269|PubMed:24307681}. FUNCTION: Influences the subcellular localization patterns of other exocyst complex proteins (e.g. SEC5A, SEC15A, SEC15B and EXO84B) leading to their recruitment to exocyst, well-defined large punctate structures throughout the cytosol (PubMed:19895414, PubMed:24307681). Essential component for the formation and the recruitment of exocyst subunits to the exocyst-positive organelle (EXPO), a secreted double membrane structure also called extracellular exosome, that acts as a sequester for cytosolic proteins to release them into the apoplast (PubMed:21193573, PubMed:24307681). {ECO:0000269|PubMed:19895414, ECO:0000269|PubMed:21193573, ECO:0000269|PubMed:24307681}. R-ATH-5620916; 73486 Exocyst complex component EXO70E2 (AtExo70e2) (Exocyst subunit Exo70 family protein E2) cytosol [GO:0005829]; endomembrane system [GO:0012505]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; exocytosis [GO:0006887]; positive regulation of extracellular exosome assembly [GO:1903553]; protein transport [GO:0015031]; regulation of protein targeting [GO:1903533] TISSUE SPECIFICITY: Expressed in roots, in the root-hair zone, both in root hair and nonhair cells. {ECO:0000269|PubMed:20943851}. locus:2159386; AT5G61010 Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411DWKV Q0V7V4,Q9C5J2,Q56YU8,F4HXH4 Q0V7V4_ARATH,Q9C5J2_ARATH,Q56YU8_ARATH,F4HXH4_ARATH At1g19480 (DNA glycosylase superfamily protein),DNA glycosylase superfamily protein (Putative 3-methyladenine DNA glycosylase),DNA glycosylase superfamily protein (Uncharacterized protein At1g19480),DNA glycosylase superfamily protein ARA:AT1G19480-MONOMER; 41896,43031,41366,43391 At1g19480 (DNA glycosylase superfamily protein),DNA glycosylase superfamily protein (Putative 3-methyladenine DNA glycosylase),DNA glycosylase superfamily protein (Uncharacterized protein At1g19480),DNA glycosylase superfamily protein cytoplasm [GO:0005737]; protein-DNA complex [GO:0032993]; alkylated DNA binding [GO:0032131]; DNA-3-methyladenine glycosylase activity [GO:0008725]; DNA-7-methylguanine glycosylase activity [GO:0043916]; base-excision repair, AP site formation [GO:0006285]; DNA dealkylation involved in DNA repair [GO:0006307],catalytic activity [GO:0003824]; base-excision repair [GO:0006284],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein-DNA complex [GO:0032993]; alkylated DNA binding [GO:0032131]; DNA-3-methyladenine glycosylase activity [GO:0008725]; DNA-7-methylguanine glycosylase activity [GO:0043916]; base-excision repair, AP site formation [GO:0006285]; DNA dealkylation involved in DNA repair [GO:0006307] locus:2016457;,locus:2025127; AT1G19480,AT1G75230 DNA-3-methyladenine glycosylase 10A19I.4 (Os05g0579100 protein) (cDNA, clone: J100087H10, full insert sequence),Os03g0248250 protein Q9XHW2,A0A0P0VVS2 Q9XHW2_ORYSJ,A0A0P0VVS2_ORYSJ 10A19I.4 Os05g0579100 OSNPB_050579100,Os03g0248250 OSNPB_030248250 ENOG411DWKW UMK2 Q6NMK6,A0A1P8B5G4 KCY2_ARATH,A0A1P8B5G4_ARATH Probable UMP-CMP kinase 2 (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK),UMP-CMP kinase (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK) FUNCTION: Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. {ECO:0000255|HAMAP-Rule:MF_03172}. ARA:AT4G25280-MONOMER; 2.7.4.14 27835,29045 Probable UMP-CMP kinase 2 (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK),UMP-CMP kinase (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cytidylate kinase activity [GO:0004127]; uridylate kinase activity [GO:0009041]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; pyrimidine nucleotide biosynthetic process [GO:0006221],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cytidylate kinase activity [GO:0004127]; hydrolase activity [GO:0016787]; uridylate kinase activity [GO:0009041]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; pyrimidine nucleotide biosynthetic process [GO:0006221] locus:2122644; AT4G25280 adenylate UMP-CMP kinase 2 (EC 2.7.4.14) (Deoxycytidylate kinase 2) (CK 2) (dCMP kinase 2) (Uridine monophosphate/cytidine monophosphate kinase 2) (UMP/CMP kinase 2) (UMP/CMPK 2),UMP-CMP kinase (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK) Q7XMI0,B9FD10,A0A0P0W6F1 KCY2_ORYSJ,B9FD10_ORYSJ,A0A0P0W6F1_ORYSJ Os04g0105500 LOC_Os04g01530 OSJNBb0004G23.5,Os04g0105500 OsJ_13512 OSNPB_040105500,Os04g0105500 OSNPB_040105500 FUNCTION: Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. {ECO:0000255|HAMAP-Rule:MF_03172}.,FUNCTION: Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors. {ECO:0000256|HAMAP-Rule:MF_03172}. ENOG411DWKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: WPP domain-interacting tail-anchored protein Os01g0235350 protein A0A0P0V0A8 A0A0P0V0A8_ORYSJ Os01g0235350 OSNPB_010235350 ENOG411DWKU Q9C9T1 Q9C9T1_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein F25P22.23) 48689 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein F25P22.23) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2027769; AT1G73810 Core-2/I-Branching enzyme Os02g0327500 protein (cDNA clone:J023026H02, full insert sequence),Os10g0127350 protein (Fragment) Q6YWE7,A0A0P0XRC7 Q6YWE7_ORYSJ,A0A0P0XRC7_ORYSJ Os02g0327500 Os02g0327500 OsJ_06510 OSJNBb0042G06.17 OSNPB_020327500 P0622F08.2,Os10g0127350 OSNPB_100127350 ENOG411DWKZ Q94K14,Q5Q0I2,B3H6N3 Q94K14_ARATH,Q5Q0I2_ARATH,B3H6N3_ARATH Protein kinase superfamily protein (Uncharacterized protein At5g26110) (Uncharacterized protein T1N24.12),TP53-regulating kinase-like protein,Protein kinase superfamily protein 25132,9944,17826 Protein kinase superfamily protein (Uncharacterized protein At5g26110) (Uncharacterized protein T1N24.12),TP53-regulating kinase-like protein,Protein kinase superfamily protein cytosol [GO:0005829]; EKC/KEOPS complex [GO:0000408]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; tRNA threonylcarbamoyladenosine metabolic process [GO:0070525],cytosol [GO:0005829]; EKC/KEOPS complex [GO:0000408]; nucleus [GO:0005634]; protein serine/threonine kinase activity [GO:0004674]; tRNA threonylcarbamoyladenosine metabolic process [GO:0070525],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2180637;,locus:2205125; AT5G26110,AT1G08120 serine threonine-protein kinase BUD32 homolog Os10g0422300 protein A0A0P0XUC4 A0A0P0XUC4_ORYSJ Os10g0422300 OSNPB_100422300 ENOG411DWKX Q8VY15,A0A1P8ARN1 Q8VY15_ARATH,A0A1P8ARN1_ARATH Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (Uncharacterized protein At1g60210),Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 101497,85988 Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (Uncharacterized protein At1g60210),Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein RNA binding [GO:0003723]; mRNA processing [GO:0006397] locus:2195568; AT1G60200 PWI Os08g0416400 protein (Fragment),Os08g0416400 protein Q0J5P2,A0A0P0XFY6 Q0J5P2_ORYSJ,A0A0P0XFY6_ORYSJ Os08g0416400 Os08g0416400 OSNPB_080416400,Os08g0416400 OSNPB_080416400 ENOG411DWKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411DWKB BDG1,BDG3 Q8LFX7,O22977,A0A1P8AWW6,A0A1P8AX04 BDG1_ARATH,BDG3_ARATH,A0A1P8AWW6_ARATH,A0A1P8AX04_ARATH Probable lysophospholipase BODYGUARD 1 (AtBDG1) (EC 3.1.1.-) (Protein 9-cis epoxycarotenoid dioxygenase defective 1) (Protein COOL BREATH 5),Probable lysophospholipase BODYGUARD 3 (AtBDG3) (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein DISRUPTION PHENOTYPE: Defects characteristic of the loss of cuticle structure associated with an enhanced accumulation of cell wall-bound lipids and epicuticular waxes (PubMed:16415209, PubMed:17257167, PubMed:18952782, PubMed:26990896). Reduced expression of abscissic acid (ABA) biosynthesis genes (e.g. NCED3) in response to osmotic stress (e.g. polyethylene glycol) leading to reduced levels of ABA and high sensitivity to osmotic stress and drought, especially during seed germination and early seedling development (PubMed:21610183). Increased aerial tissue permeability to the toluidine blue (TB) dye (PubMed:18952782). Enhanced transpiration. Strong decrease in total cutin monomer load in young leaves and flowers. Reduced levels of suberin in roots (PubMed:26990896). Pleiotropic effect on growth, viability, and cell differentiation, leading to abnormalities such as long root hairs, excessively branched roots, shrinking of epidermal cells, and flattened/misshapen trichomes (PubMed:16415209). Strong increase of total lateral root lengths (TOT) on mild osmotic stress conditions (PubMed:18952782). Total immunity to the pathogenic necrotrophic fungus Botrytis cinerea accompanied by the release of a fungitoxic activity and increased expression of defense genes (PubMed:17257167). {ECO:0000269|PubMed:16415209, ECO:0000269|PubMed:17257167, ECO:0000269|PubMed:18952782, ECO:0000269|PubMed:21610183, ECO:0000269|PubMed:26990896}. Abnormal leaf shape and size fused organs abnormal cuticle with increased wax layers increased wax contentreduced trichome numbers.,Cuticular defects. Resistant to Botrytis cinerea. Semi-dwarf; Increased branching; Curved, elongated, slightly serrated leaves; Incomplete penetrance of fused leaves; Sensitive to fungicides-A. Yephremov-2006 FUNCTION: Controls cuticle development and morphogenesis, by promoting cutin and suberin monomers loading (PubMed:16415209, PubMed:17257167, PubMed:18952782, PubMed:26990896). Involved in the regulation of abscissic acid (ABA) biosynthesis in response to osmotic stress. Plays an important role in osmotic stress and drought resistance (PubMed:21610183). Required to ensure a reduced permeability of aerial tissue, thus preventing transpiration (PubMed:18952782, PubMed:21610183, PubMed:26990896). Regulates lateral root hair development (PubMed:18952782). {ECO:0000269|PubMed:16415209, ECO:0000269|PubMed:17257167, ECO:0000269|PubMed:18952782, ECO:0000269|PubMed:21610183, ECO:0000269|PubMed:26990896}.; FUNCTION: Required for infection by the pathogenic necrotrophic fungus Botrytis cinerea, probably by regulating structural traits of the cuticle. {ECO:0000269|PubMed:17257167}.,FUNCTION: Involved in cuticle development and morphogenesis. {ECO:0000250|UniProtKB:Q8LFX7}. 3.1.1.- 53428,56211,59723,58791 Probable lysophospholipase BODYGUARD 1 (AtBDG1) (EC 3.1.1.-) (Protein 9-cis epoxycarotenoid dioxygenase defective 1) (Protein COOL BREATH 5),Probable lysophospholipase BODYGUARD 3 (AtBDG3) (EC 3.1.1.-),Alpha/beta-Hydrolases superfamily protein extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; abscisic acid biosynthetic process [GO:0009688]; cell wall organization [GO:0071555]; cuticle development [GO:0042335]; cutin biosynthetic process [GO:0010143]; defense response to fungus [GO:0050832]; lateral root development [GO:0048527]; positive regulation of cutin biosynthetic process [GO:1901959]; positive regulation of response to water deprivation [GO:1902584]; regulation of abscisic acid biosynthetic process [GO:0010115]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; suberin biosynthetic process [GO:0010345]; transpiration [GO:0010148],cell wall [GO:0005618]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] DEVELOPMENTAL STAGE: In germinating seed, present in the embryo epidermis, in cotyledons and in leaf primordia of the first true leaves. In cotyledons, mostly expressed in guard cells and vasculature. Observed in developing leaf buds, including the nodes and buds of cauline leaves (PubMed:26990896). In flowers, expressed in all organs, levels decreasing during flower aging. In the pistil, accumulates mostly in the abaxial epidermal cells, and, to a lower extent, in the septum and the inner ovary wall (PubMed:16415209, PubMed:26990896). Also expressed in the stigmatic papillae and vasculature of the sepals, petals and stamens. Accumulates in embryo during seed dehydration. Present in the central cylinder of the roots. In addition, detected in suberized tissues, such as siliques abscission zone and seed chalaza/micropyle region (PubMed:26990896). {ECO:0000269|PubMed:16415209, ECO:0000269|PubMed:26990896}. TISSUE SPECIFICITY: Expressed exclusively in protodermal and epidermal cells of all organs, especially on adaxial sides. {ECO:0000269|PubMed:16299169, ECO:0000269|PubMed:16415209}. locus:2019464;,locus:2134976; AT1G64670,AT4G24140 hydrolase alpha beta fold family Hydrolase, alpha/beta fold family protein, expressed (Os10g0532200 protein) (cDNA clone:002-121-H06, full insert sequence),Os06g0132500 protein Q8LN42,A0A0P0WRY9 Q8LN42_ORYSJ,A0A0P0WRY9_ORYSJ Os10g0532200 LOC_Os10g38860 Os10g0532200 OsJ_32257 OSJNBa0053C23.17 OSNPB_100532200,Os06g0132500 OSNPB_060132500 ENOG411DWKC Q7Y205,A0A1I9LQF4,F4JEA6,F4K735,F4K736 Q7Y205_ARATH,A0A1I9LQF4_ARATH,F4JEA6_ARATH,F4K735_ARATH,F4K736_ARATH Quinoprotein amine dehydrogenase, beta chain-like RIC1-like guanyl-nucleotide exchange factor (Uncharacterized protein At5g28440),Quinoprotein amine dehydrogenase, beta chain-like RIC1-like guanyl-nucleotide exchange factor 9522,126359,121423,126776,122135 Quinoprotein amine dehydrogenase, beta chain-like RIC1-like guanyl-nucleotide exchange factor (Uncharacterized protein At5g28440),Quinoprotein amine dehydrogenase, beta chain-like RIC1-like guanyl-nucleotide exchange factor cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; RIC1-RGP1 guanyl-nucleotide exchange factor complex [GO:0034066]; Rab GTPase binding [GO:0017137]; Rab guanyl-nucleotide exchange factor activity [GO:0017112]; intracellular protein transport [GO:0006886]; retrograde transport, endosome to Golgi [GO:0042147] locus:6530298240;,locus:2082777;,locus:2146589; AT5G28442,AT3G61480,AT5G28350 protein RIC1 homolog Os02g0786000 protein B9F3M7 B9F3M7_ORYSJ Os02g0786000 OsJ_08650 OSNPB_020786000 ENOG411DWKA MENG Q3ED65 MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic (EC 2.1.1.329) (Demethylphylloquinone methyltransferase) (Menaquinone biosynthesis methyltransferase ubiE-like protein) DISRUPTION PHENOTYPE: Lack of phylloquinone and reduced growth under normal light. Loss of anthocyanin accumulation under high light. {ECO:0000269|PubMed:17082184}. FUNCTION: Involved in the biosynthesis of phylloquinone (vitamin K1). Methyltransferase required for the conversion of 2-phytyl-1,4-beta-naphthoquinol to phylloquinol. {ECO:0000255|HAMAP-Rule:MF_03192, ECO:0000269|PubMed:17082184}. ARA:AT1G23360-MONOMER; 2.1.1.329 29051 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic (EC 2.1.1.329) (Demethylphylloquinone methyltransferase) (Menaquinone biosynthesis methyltransferase ubiE-like protein) chloroplast [GO:0009507]; 2-phytyl-1,4-naphthoquinone methyltransferase activity [GO:0052624]; phylloquinone biosynthetic process [GO:0042372] locus:2028050; AT1G23360 methyltransferase Os04g0507800 protein (Fragment) C7J169 C7J169_ORYSJ Os04g0507800 Os04g0507800 OSNPB_040507800 ENOG411DWKF GSTF6,GSTF7,GSTF8 P42760,Q9SRY5,Q96266 GSTF6_ARATH,GSTF7_ARATH,GSTF8_ARATH Glutathione S-transferase F6 (AtGSTF6) (EC 2.5.1.18) (AtGSTF3) (GST class-phi member 6) (Glutathione S-transferase 1) (AtGST1) (Protein EARLY RESPONSE TO DEHYDRATION 11),Glutathione S-transferase F7 (EC 2.5.1.18) (AtGSTF8) (GST class-phi member 7) (Glutathione S-transferase 11),Glutathione S-transferase F8, chloroplastic (AtGSTF8) (EC 2.5.1.18) (AtGSTF5) (GST class-phi member 8) (Glutathione S-transferase 6) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but reduced levels of camalexin production during infection by B.cinerea. {ECO:0000269|PubMed:21239642}. FUNCTION: Involved in camalexin biosynthesis by probably catalyzing the conjugation of GSH with indole-3-acetonitrile (IAN). May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:21239642}.,FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}.,FUNCTION: In vitro, possesses glutathione S-transferase activity toward 1-chloro-2,4-dinitrobenzene (CDNB) and glutathione peroxidase activity toward cumene hydroperoxide and linoleic acid-13-hydroperoxide. May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000269|PubMed:12090627}. ARA:AT1G02930-MONOMER;,ARA:AT1G02920-MONOMER;,ARA:AT2G47730-MONOMER;MetaCyc:AT2G47730-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 23486,23598,29232 Glutathione S-transferase F6 (AtGSTF6) (EC 2.5.1.18) (AtGSTF3) (GST class-phi member 6) (Glutathione S-transferase 1) (AtGST1) (Protein EARLY RESPONSE TO DEHYDRATION 11),Glutathione S-transferase F7 (EC 2.5.1.18) (AtGSTF8) (GST class-phi member 7) (Glutathione S-transferase 11),Glutathione S-transferase F8, chloroplastic (AtGSTF8) (EC 2.5.1.18) (AtGSTF5) (GST class-phi member 8) (Glutathione S-transferase 6) cell wall [GO:0005618]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; camalexin binding [GO:2001147]; cobalt ion binding [GO:0050897]; copper ion binding [GO:0005507]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; quercitrin binding [GO:2001227]; defense response to bacterium [GO:0042742]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; vacuole [GO:0005773]; cobalt ion binding [GO:0050897]; copper ion binding [GO:0005507]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; toxin catabolic process [GO:0009407],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; nucleus [GO:0005634]; stromule [GO:0010319]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]; peroxidase activity [GO:0004601]; defense response [GO:0006952]; defense response to bacterium [GO:0042742]; glutathione metabolic process [GO:0006749]; response to cold [GO:0009409]; response to karrikin [GO:0080167]; response to salt stress [GO:0009651]; toxin catabolic process [GO:0009407] TISSUE SPECIFICITY: Isoform 1 is predominantly expressed in leaves and isoform 2 in roots. {ECO:0000269|PubMed:17670748}. locus:2024690;,locus:2024700;,locus:2043298; AT1G02930,AT1G02920,AT2G47730 glutathione s-transferase NA NA NA NA NA NA NA ENOG411DWKG BRR2C,MAF19.14 Q9FNQ1,F4K203 DEXHE_ARATH,F4K203_ARATH DExH-box ATP-dependent RNA helicase DExH14 (EC 3.6.4.13) (BRR2 homolog C) (AtBRR2C) (Pre-mRNA-splicing helicase BRR2C),U5 small nuclear ribonucleoprotein helicase FUNCTION: RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. Involved in spliceosome assembly, activation and disassembly. {ECO:0000250|UniProtKB:P32639}. 3.6.4.13 244528,243177 DExH-box ATP-dependent RNA helicase DExH14 (EC 3.6.4.13) (BRR2 homolog C) (AtBRR2C) (Pre-mRNA-splicing helicase BRR2C),U5 small nuclear ribonucleoprotein helicase spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] locus:2159451; AT5G61140 activating signal cointegrator 1 complex subunit Os03g0213400 protein (Fragment),Os03g0218100 protein (Fragment) Q0DU12,A0A0P0VUP0,A0A0P0VUU2 Q0DU12_ORYSJ,A0A0P0VUP0_ORYSJ,A0A0P0VUU2_ORYSJ Os03g0213400 OSNPB_030213400,Os03g0218100 OSNPB_030218100 ENOG411DWKD MXC17.10 F4KIH8 F4KIH8_ARATH Transducin/WD40 repeat-like superfamily protein 148070 Transducin/WD40 repeat-like superfamily protein plasma membrane [GO:0005886] locus:2176836; AT5G24710 WD domain G-beta repeat Os01g0653800 protein (WD-40 repeat family protein-like),Os01g0653800 protein (Fragment),Os05g0297001 protein (Fragment) Q5VPC8,A0A0P0V5Y9,A0A0P0V627,A0A0P0WK79 Q5VPC8_ORYSJ,A0A0P0V5Y9_ORYSJ,A0A0P0V627_ORYSJ,A0A0P0WK79_ORYSJ Os01g0653800 Os01g0653800 OSJNBb0006H05.18-1 OSNPB_010653800,Os01g0653800 OSNPB_010653800,Os05g0297001 OSNPB_050297001 ENOG411DWKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX13 (HD-ZIP protein HOX13) (Homeodomain transcription factor HOX13) (OsHox13),Os03g0188900 protein (Fragment) Q10QP3,A0A0P0VU00 HOX13_ORYSJ,A0A0P0VU00_ORYSJ HOX13 Os03g0188900 LOC_Os03g08960 OJ1217B09.11,Os03g0188900 OSNPB_030188900 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DWKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD homeobox protein Zinc-finger homeodomain protein 9 (OsZHD9),Os09g0414600 protein,Os06g0337200 protein (Fragment) Q6ER21,Q0J1T2,A0A0P0WWD7 ZHD9_ORYSJ,Q0J1T2_ORYSJ,A0A0P0WWD7_ORYSJ ZHD9 Os09g0414600 LOC_Os09g24820 P0707C02.7,Os09g0414600 OSNPB_090414600,Os06g0337200 OSNPB_060337200 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411DWKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Expressed protein (Os10g0190500 protein) (cDNA clone:J023049F05, full insert sequence) Q33AD5 Q33AD5_ORYSJ Os10g0190500 LOC_Os10g11310 Os10g0190500 OsJ_30948 OSNPB_100190500 ENOG411DWKH ABCB8 Q9LHK4 AB8B_ARATH Putative ABC transporter B family member 8 (ABC transporter ABCB.8) (AtABCB8) (P-glycoprotein 8) (Putative multidrug resistance protein 22) 137112 Putative ABC transporter B family member 8 (ABC transporter ABCB.8) (AtABCB8) (P-glycoprotein 8) (Putative multidrug resistance protein 22) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] AT3G30875 ABC transporter B family member 8-like MDR-like ABC transporter (MDR-like p-glycoprotein-like) (Os01g0723800 protein),Os01g0723800 protein (Fragment) Q8GU81,A0A0P0V7L5 Q8GU81_ORYSJ,A0A0P0V7L5_ORYSJ mdr17 P0022F10.19-1 Os01g0723800 OsJ_03309 OSNPB_010723800,Os01g0723800 OSNPB_010723800 ENOG411DWKI RPL17A,RPL17B Q93VI3,P51413,F4HRW5 RL171_ARATH,RL172_ARATH,F4HRW5_ARATH 60S ribosomal protein L17-1,60S ribosomal protein L17-2,Ribosomal protein L22p/L17e family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 19897,19854,14767 60S ribosomal protein L17-1,60S ribosomal protein L17-2,Ribosomal protein L22p/L17e family protein chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuole [GO:0005773]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],large ribosomal subunit [GO:0015934]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2015929;,locus:2197624; AT1G27400,AT1G67430 ribosomal protein Os09g0258600 protein (Putative ribosomal protein L17) (cDNA clone:001-047-A12, full insert sequence) (cDNA clone:J013048E22, full insert sequence) (cDNA clone:J023134I03, full insert sequence),Os08g0530200 protein (Putative ribosomal protein L17) (cDNA clone:001-044-B07, full insert sequence) (cDNA clone:J013100M19, full insert sequence) Q6K1W6,Q6ZIA1 Q6K1W6_ORYSJ,Q6ZIA1_ORYSJ Os09g0258600 Os09g0258600 B1279D09.8 OsJ_28568 OSNPB_090258600 P0523B07.46,Os08g0530200 Os08g0530200 OJ1770_H02.31 OJ1789_C07.10 OsJ_28046 OSNPB_080530200 ENOG411DWKN VHA-c1,VHA-c4,VHA-c2,VHA-c3,VHA-c5,AVA-P2,AVA-P1,VHA-C3,AVA-P4 P0DH92,P59229,P59228,P0DH93,P0DH94,A0A1P8AQP0,A0A1P8B7X4,A0A1P8B937,F4HZ57 VATL1_ARATH,VATL4_ARATH,VATL2_ARATH,VATL3_ARATH,VATL5_ARATH,A0A1P8AQP0_ARATH,A0A1P8B7X4_ARATH,A0A1P8B937_ARATH,F4HZ57_ARATH V-type proton ATPase subunit c1 (V-ATPase subunit c1) (V-type proton ATPase 16 kDa proteolipid subunit c1) (V-ATPase 16 kDa proteolipid subunit c1) (Vacuolar H(+)-ATPase subunit c isoform 1) (Vacuolar proton pump 16 kDa proteolipid subunit c1) (Vacuolar proton pump subunit c1),V-type proton ATPase subunit c4 (V-ATPase subunit c4) (V-type proton ATPase 16 kDa proteolipid subunit c4) (V-ATPase 16 kDa proteolipid subunit c4) (Vacuolar H(+)-ATPase subunit c isoform 4) (Vacuolar proton pump 16 kDa proteolipid subunit c4) (Vacuolar proton pump subunit c4),V-type proton ATPase subunit c2 (V-ATPase subunit c2) (V-type proton ATPase 16 kDa proteolipid subunit c2) (V-ATPase 16 kDa proteolipid subunit c2) (Vacuolar H(+)-ATPase subunit c isoform 2) (Vacuolar proton pump 16 kDa proteolipid subunit c2) (Vacuolar proton pump subunit c2),V-type proton ATPase subunit c3 (V-ATPase subunit c3) (V-type proton ATPase 16 kDa proteolipid subunit c3) (V-ATPase 16 kDa proteolipid subunit c3) (Vacuolar H(+)-ATPase subunit c isoform 3) (Vacuolar proton pump 16 kDa proteolipid subunit c3) (Vacuolar proton pump subunit c3),V-type proton ATPase subunit c5 (V-ATPase subunit c5) (V-type proton ATPase 16 kDa proteolipid subunit c5) (V-ATPase 16 kDa proteolipid subunit c5) (Vacuolar H(+)-ATPase subunit c isoform 5) (Vacuolar proton pump 16 kDa proteolipid subunit c5) (Vacuolar proton pump subunit c5),V-type proton ATPase proteolipid subunit FUNCTION: Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.,FUNCTION: Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. {ECO:0000256|RuleBase:RU363060}. R-ATH-1222556;R-ATH-6798695;R-ATH-77387;R-ATH-917977; 16572,16686,16643,12103,14359,13945,20534 V-type proton ATPase subunit c1 (V-ATPase subunit c1) (V-type proton ATPase 16 kDa proteolipid subunit c1) (V-ATPase 16 kDa proteolipid subunit c1) (Vacuolar H(+)-ATPase subunit c isoform 1) (Vacuolar proton pump 16 kDa proteolipid subunit c1) (Vacuolar proton pump subunit c1),V-type proton ATPase subunit c4 (V-ATPase subunit c4) (V-type proton ATPase 16 kDa proteolipid subunit c4) (V-ATPase 16 kDa proteolipid subunit c4) (Vacuolar H(+)-ATPase subunit c isoform 4) (Vacuolar proton pump 16 kDa proteolipid subunit c4) (Vacuolar proton pump subunit c4),V-type proton ATPase subunit c2 (V-ATPase subunit c2) (V-type proton ATPase 16 kDa proteolipid subunit c2) (V-ATPase 16 kDa proteolipid subunit c2) (Vacuolar H(+)-ATPase subunit c isoform 2) (Vacuolar proton pump 16 kDa proteolipid subunit c2) (Vacuolar proton pump subunit c2),V-type proton ATPase subunit c3 (V-ATPase subunit c3) (V-type proton ATPase 16 kDa proteolipid subunit c3) (V-ATPase 16 kDa proteolipid subunit c3) (Vacuolar H(+)-ATPase subunit c isoform 3) (Vacuolar proton pump 16 kDa proteolipid subunit c3) (Vacuolar proton pump subunit c3),V-type proton ATPase subunit c5 (V-ATPase subunit c5) (V-type proton ATPase 16 kDa proteolipid subunit c5) (V-ATPase 16 kDa proteolipid subunit c5) (Vacuolar H(+)-ATPase subunit c isoform 5) (Vacuolar proton pump 16 kDa proteolipid subunit c5) (Vacuolar proton pump subunit c5),V-type proton ATPase proteolipid subunit integral component of membrane [GO:0016021]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035],integral component of membrane [GO:0016021]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuole [GO:0005773]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035],integral component of membrane [GO:0016021]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; vacuolar membrane [GO:0005774]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled proton transport [GO:0015991],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled proton transport [GO:0015991] TISSUE SPECIFICITY: Expressed in leaf, root, flower and silique. Expression is lower in roots. {ECO:0000269|PubMed:7579175}.,TISSUE SPECIFICITY: Expressed in leaf, root, flower and silique, with lower expression in roots.,TISSUE SPECIFICITY: Expressed in leaf, root, flower and silique. {ECO:0000269|PubMed:18507826, ECO:0000269|PubMed:7579175}. locus:2139634;,locus:2035401;,locus:2120237;,locus:2045101;,locus:2005649; AT4G34720,AT1G75630,AT1G19910,AT4G38920,AT2G16510 V-type proton ATPase 16 kDa proteolipid V-type proton ATPase 16 kDa proteolipid subunit (V-ATPase 16 kDa proteolipid subunit) (Vacuolar proton pump 16 kDa proteolipid subunit),V-type proton ATPase proteolipid subunit Q0IUB5,Q94DM9,Q6Z0Z9,Q65XI1,Q0IPT8 VATL_ORYSJ,Q94DM9_ORYSJ,Q6Z0Z9_ORYSJ,Q65XI1_ORYSJ,Q0IPT8_ORYSJ VATP-P1 Os11g0169900 LOC_Os11g06890 OsJ_031784,Os01g0962300 OsJ_04853 OSNPB_010962300 P0483G10.24,Os02g0550100 Os02g0550100 OsJ_07092 OSJNBa0040I22.27 OSNPB_020550100 P0451A10.15,Os05g0106100 OsJ_16817 OSJNBb0035J08.12 OSNPB_050106100,Os12g0168900 Os12g0168900 OsJ_35361 OSNPB_120168900 FUNCTION: Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.,FUNCTION: Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. {ECO:0000256|RuleBase:RU363060}. ENOG411DWKM PLP2 O48723 PLP2_ARATH Patatin-like protein 2 (AtPLP2) (EC 3.1.1.-) (Patatin-related phospholipase A IIalpha) (pPLAIIa) (Phospholipase A IIA) (AtPLAIIA) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but leaves of mutant plants contain decreased levels of lysophosphatidylcholine (LPC) and lysophosphatidylethanolamine(LPE), but increased levels of free linolenic acid, jasmonic acid and methyl jasmonate, as well as the oxylipin-biosynthetic intermediates 13-hydroperoxylinolenic acid and 12-oxophytodienoic acid. {ECO:0000269|PubMed:22259021}. FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Catalyzes the hydrolysis of the galactolipids monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG), and less efficiently the phoshpolipids phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidic acid (PA), phosphatidylserine (PS) and phosphatidylinositol (PI). Favors the release of fatty acid at the sn-1 position for PC or PE and the sn-2 position for PG, PA, PS and PI. Negatively affects disease resistance to the necrotic fungal pathogen Botrytis cinerea and the avirulent bacteria Pseudomonas syringae by promoting cell death and reducing the efficiency of the hypersensitive response, respectively. However, PLP2 contributes to resistance to cucumber mosaic virus (CMV), an obligate parasite inducing hypersensitive response. May negatively regulate oxylipin production, possibly via participating in membrane repair that includes removal of oxidatively modified lipids. {ECO:0000269|PubMed:16297072, ECO:0000269|PubMed:19271961, ECO:0000269|PubMed:22259021}. ARA:AT2G26560-MONOMER; 3.1.1.- 44239 Patatin-like protein 2 (AtPLP2) (EC 3.1.1.-) (Patatin-related phospholipase A IIalpha) (pPLAIIa) (Phospholipase A IIA) (AtPLAIIA) cytoplasm [GO:0005737]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipase activity [GO:0016298]; phospholipase activity [GO:0004620]; cellular response to hypoxia [GO:0071456]; defense response to virus [GO:0051607]; lipid catabolic process [GO:0016042]; lipid metabolic process [GO:0006629]; oxylipin biosynthetic process [GO:0031408]; plant-type hypersensitive response [GO:0009626]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Expressed specifically in roots. {ECO:0000269|PubMed:12226489}. locus:2066286; AT2G26560 Patatin group Patatin (EC 3.1.1.-),Patatin (EC 3.1.1.-) (Fragment),Os08g0376550 protein F4MGD9,Q6ZG42,Q2R189,Q6ZG46,A0A0P0Y489,A0A0P0XPE4,A0A0P0XFP9,A0A0P0XFR0 F4MGD9_ORYSJ,Q6ZG42_ORYSJ,Q2R189_ORYSJ,Q6ZG46_ORYSJ,A0A0P0Y489_ORYSJ,A0A0P0XPE4_ORYSJ,A0A0P0XFP9_ORYSJ,A0A0P0XFR0_ORYSJ Os11g0614500 LOC_Os11g40009 OSNPB_110614500,Os08g0477100 OJ1111_E05.24 OsJ_27670 OSNPB_080477100,Os11g0614400 LOC_Os11g39990 Os11g0614400 OsJ_33950 OSNPB_110614400,Os08g0476900 OJ1111_E05.19 OSNPB_080476900,Os11g0614500 OSNPB_110614500,Os09g0462400 OSNPB_090462400,Os08g0376500 OSNPB_080376500,Os08g0376550 OSNPB_080376550 FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411DWK2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411DWK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0658000 protein Q7XAN1 Q7XAN1_ORYSJ OJ1477_F01.108 P0047B07.129 Os07g0658000 OsJ_25430 OSNPB_070658000 ENOG411DWK0 BXL7 Q9SGZ5 BXL7_ARATH Probable beta-D-xylosidase 7 (AtBXL7) (EC 3.2.1.-) ARA:AT1G78060-MONOMER; 3.2.1.- 83892 Probable beta-D-xylosidase 7 (AtBXL7) (EC 3.2.1.-) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; proteinaceous extracellular matrix [GO:0005578]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2029391; AT1G78060 beta-D-xylosidase Os02g0752200 protein (Putative beta-D-xylosidase) Q6Z8I7 Q6Z8I7_ORYSJ Os02g0752200 Os02g0752200 OJ1288_G09.2 OsJ_08409 OSNPB_020752200 P0431B06.43 ENOG411DWK1 PK3 O04265,F4K9L9 O04265_ARATH,F4K9L9_ARATH At5g08160 (Serine/threonine protein kinase) (Serine/threonine protein kinase 3),Serine/threonine protein kinase 3 38636,35046 At5g08160 (Serine/threonine protein kinase) (Serine/threonine protein kinase 3),Serine/threonine protein kinase 3 cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2181489; AT5G08160 serine threonine-protein kinase Os09g0372800 protein (Putative serine/threonine-protein kinase 16) (cDNA clone:J023026N24, full insert sequence) Q6H4I5 Q6H4I5_ORYSJ Os09g0372800 Os09g0372800 OsJ_29137 OSNPB_090372800 P0599F09.13 ENOG411DWK6 ALDH11A3 Q1WIQ6,F4INS6 GAPN_ARATH,F4INS6_ARATH NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) (Aldehyde dehydrogenase family 11 member A3) (Glyceraldehyde-3-phosphate dehydrogenase [NADP(+)]) (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Triosephosphate dehydrogenase),Aldehyde dehydrogenase 11A3 Abortion of the first 3-4 basal siliques. However other non-aborting siliques are similar to those of wildtype.,Delay in growth when grown under normal conditions. No significant morphological differences in leaves roots stems and flowers between mutant and wildtype.,Higher levels of superoxide (reactive oxygen species) production were observed particularly in trichomes. This corrolates with the induction in the mutant of three genes known to be involved in stress responses.,Increase of about 40% of NADPH levels.,Normal fertility compared to wildtype.,The rate of CO2 assimilation per unit leaf area is decreased about 40% compared to wildtype plants. Slow growth-D. Gomez-Casati-2006 FUNCTION: Important as a means of generating NADPH for biosynthetic reactions. ARA:AT2G24270-MONOMER;MetaCyc:AT2G24270-MONOMER; 1.2.1.9 53060,53849 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) (Aldehyde dehydrogenase family 11 member A3) (Glyceraldehyde-3-phosphate dehydrogenase [NADP(+)]) (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Triosephosphate dehydrogenase),Aldehyde dehydrogenase 11A3 cytoplasm [GO:0005737]; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity [GO:0008886],glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity [GO:0008886] locus:2047485; AT2G24270 glyceraldehyde-3-phosphate dehydrogenase Glyceraldehyde-3-phosphate dehydrogenase (Os08g0440800 protein) (cDNA clone:J023100G04, full insert sequence) Q6Z9G0 Q6Z9G0_ORYSJ Os08g0440800 OSNPB_080440800 P0524F03.45 P0528B09.18 ENOG411DWK7 Q94AB2,A0A1P8AZW9,A0A1P8AZY0,A0A1P8AZW4,F4IP61 Q94AB2_ARATH,A0A1P8AZW9_ARATH,A0A1P8AZY0_ARATH,A0A1P8AZW4_ARATH,F4IP61_ARATH AT3g58640/F14P22_230 (Mitogen activated protein kinase kinase kinase-like protein) (Uncharacterized protein At3g58640),Mitogen activated protein kinase kinase kinase-like protein R-ATH-430116;R-ATH-442742;R-ATH-5673000;R-ATH-5674135;R-ATH-5674499;R-ATH-5675221; 90022,82134,69659,70860,86070 AT3g58640/F14P22_230 (Mitogen activated protein kinase kinase kinase-like protein) (Uncharacterized protein At3g58640),Mitogen activated protein kinase kinase kinase-like protein intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; kinase activity [GO:0016301] locus:2076416;,locus:2041569; AT3G58640,AT2G42640 STYKc Os01g0674100 protein,Os01g0674100 protein (Fragment) Q0JKH6,A0A0P0V6G3,A0A0P0V6F1 Q0JKH6_ORYSJ,A0A0P0V6G3_ORYSJ,A0A0P0V6F1_ORYSJ Os01g0674100 Os01g0674100 OSNPB_010674100,Os01g0674100 OSNPB_010674100 ENOG411DWK4 ELI1 Q9SZT8 PP354_ARATH Pentatricopeptide repeat-containing protein ELI1, chloroplastic (Protein EDITING LACKING INSERTIONAL MUTANT 1) FUNCTION: Plays a major role in single RNA editing events in chloroplasts. Acts as a site-recognition transacting factor involved in the edition of the site 5 of ndhB1 and ndhB2 (ndhB1-5 and ndhB2-5 sites corresponding to cytidine-830), which are plastid-encoded subunits of the NADH-plastoquinone oxidoreductase. May provide the catalytic activity for editing site conversion. {ECO:0000269|PubMed:24194514}. ARA:AT4G37830-MONOMER;MetaCyc:AT4G37830-MONOMER; 70096 Pentatricopeptide repeat-containing protein ELI1, chloroplastic (Protein EDITING LACKING INSERTIONAL MUTANT 1) chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA modification [GO:1900865]; mRNA processing [GO:0006397]; RNA modification [GO:0009451] locus:2126352; AT4G37380 Pentatricopeptide repeat-containing protein Os07g0113500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q8GRU0 Q8GRU0_ORYSJ OJ1513_F02.122 OJ1118_G09.129 Os07g0113500 OsJ_22862 OSNPB_070113500 ENOG411DWK5 SSL5,SSL6,SSL4,SSL7,YLS2 Q9CAZ7,Q9SD05,Q9SD07,Q9SD04,F4J3D0 SSL5_ARATH,SSL6_ARATH,SSL4_ARATH,SSL7_ARATH,F4J3D0_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 5 (AtSSL5) (Protein YELLOW-LEAF-SPECIFIC GENE 2),Protein STRICTOSIDINE SYNTHASE-LIKE 6 (AtSSL6),Protein STRICTOSIDINE SYNTHASE-LIKE 4 (AtSSL4),Protein STRICTOSIDINE SYNTHASE-LIKE 7 (AtSSL7),Calcium-dependent phosphotriesterase superfamily protein 4.3.3.2; 41642,41383,41596,41124,41456 Protein STRICTOSIDINE SYNTHASE-LIKE 5 (AtSSL5) (Protein YELLOW-LEAF-SPECIFIC GENE 2),Protein STRICTOSIDINE SYNTHASE-LIKE 6 (AtSSL6),Protein STRICTOSIDINE SYNTHASE-LIKE 4 (AtSSL4),Protein STRICTOSIDINE SYNTHASE-LIKE 7 (AtSSL7),Calcium-dependent phosphotriesterase superfamily protein endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058]; response to ethylene [GO:0009723]; response to fungus [GO:0009620]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to virus [GO:0009615],endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058]; response to ethylene [GO:0009723]; response to fungus [GO:0009620]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to virus [GO:0009615]; response to wounding [GO:0009611],endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],strictosidine synthase activity [GO:0016844]; biosynthetic process [GO:0009058] DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571, ECO:0000269|PubMed:16603661}. TISSUE SPECIFICITY: Expressed in cauline leaves and flowers. {ECO:0000269|PubMed:11230571}. locus:2081845;,locus:2081860;,locus:2081830;,locus:2081875; AT3G51430,AT3G51440,AT3G51420,AT3G51450 adipocyte plasma membrane-associated protein-like Os10g0543500 protein (Fragment) Q0IW03 Q0IW03_ORYSJ Os10g0543500 Os10g0543500 OSNPB_100543500 ENOG411DWK8 LRR-RLK O64794 O64794_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor protein kinase) (T1F15.2 protein) 77172 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor protein kinase) (T1F15.2 protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2008793; AT1G67510 inactive leucine-rich repeat receptor-like protein kinase At1g66830-like Os12g0235700 protein A0A0P0Y8G5 A0A0P0Y8G5_ORYSJ Os12g0235700 OSNPB_120235700 ENOG411EKF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD finger protein At1g33420-like Os01g0877500 protein (Putative male sterility 1 protein) (cDNA clone:J033023G11, full insert sequence),Os01g0877500 protein (Fragment) Q8LJG8,A0A0P0VB50 Q8LJG8_ORYSJ,A0A0P0VB50_ORYSJ Os01g0877500 OsJ_04277 OSNPB_010877500 P0471B04.9,Os01g0877500 OSNPB_010877500 ENOG411EIFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EIFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0174200 protein) (cDNA clone:001-110-A04, full insert sequence) Q2QX11 Q2QX11_ORYSJ Os12g0174200 LOC_Os12g07550 Os12g0174200 OSNPB_120174200 ENOG411EIFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabinogalactan peptide NA NA NA NA NA NA NA ENOG411EIFE O82262,A0A1P8AZN4 O82262_ARATH,A0A1P8AZN4_ARATH At2g47950 (Expressed protein) (Myelin transcription factor-like protein) (Uncharacterized protein At2g47950),Myelin transcription factor-like protein 14025,18945 At2g47950 (Expressed protein) (Myelin transcription factor-like protein) (Uncharacterized protein At2g47950),Myelin transcription factor-like protein locus:2043418; AT2G47950 NA NA NA NA NA NA NA NA ENOG411EB06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PbH1 NA NA NA NA NA NA NA ENOG411EB0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 Os09g0287600 protein,Os09g0289000 protein,Os09g0102300 protein A3BWY8,Q6EQ82,A0A0P0XJR9 A3BWY8_ORYSJ,Q6EQ82_ORYSJ,A0A0P0XJR9_ORYSJ Os09g0287600 OsJ_28697 OSNPB_090287600,P0453B09.49 Os09g0289000 OSNPB_090289000,Os09g0102300 OSNPB_090102300 ENOG411ED13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA COPI associated protein NA NA NA NA NA NA NA ENOG411DS5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein Expressed protein (Os11g0654800 protein),Os11g0653200 protein,Leucine Rich Repeat family protein, expressed (Os11g0653300 protein) Q2R089,Q2R0A4,Q2R0A3 Q2R089_ORYSJ,Q2R0A4_ORYSJ,Q2R0A3_ORYSJ Os11g0654800 LOC_Os11g43390 Os11g0654800 OSNPB_110654800,Os11g0653200 LOC_Os11g43240 OsJ_34684 OSNPB_110653200,Os11g0653300 LOC_Os11g43250 Os11g0653300 OsJ_34685 OSNPB_110653300 ENOG411ED1M MORF4 O48582,A0A1R7T3H8 MORF4_ARATH,A0A1R7T3H8_ARATH Multiple organellar RNA editing factor 4, mitochondrial (RNA editing-interacting protein 4),High molecular weight subunit-like glutenin DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23818871}. FUNCTION: Involved in organellar RNA editing. Required for the processing of few RNA editing site in mitochondria. {ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. 79034,63173 Multiple organellar RNA editing factor 4, mitochondrial (RNA editing-interacting protein 4),High molecular weight subunit-like glutenin mitochondrion [GO:0005739]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2156344; AT5G44780 NA NA NA NA NA NA NA NA ENOG411ED1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Pfam:hATC Os10g0417501 protein A0A0P0XUX3 A0A0P0XUX3_ORYSJ Os10g0417501 OSNPB_100417501 ENOG411ED1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter NA NA NA NA NA NA NA ENOG411ED1V O22225,A0A1I9LPD4,F4J287,F4IKY7 O22225_ARATH,A0A1I9LPD4_ARATH,F4J287_ARATH,F4IKY7_ARATH At2g41640/T32G6.16 (Expressed protein) (Glycosyltransferase) (Glycosyltransferase family 61 protein) (Uncharacterized protein At2g41640; T32G6.16),Glycosyltransferase family 61 protein,Glycosyltransferase (Glycosyltransferase family 61 protein) 57363,45757,57332,55901 At2g41640/T32G6.16 (Expressed protein) (Glycosyltransferase) (Glycosyltransferase family 61 protein) (Uncharacterized protein At2g41640; T32G6.16),Glycosyltransferase family 61 protein,Glycosyltransferase (Glycosyltransferase family 61 protein) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],transferase activity, transferring glycosyl groups [GO:0016757] locus:2062709;,locus:2082598; AT2G41640,AT3G57380 Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411ED1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amb_all NA NA NA NA NA NA NA ENOG411DS5G AP22.27 A0A1P8B7L3,O49437,Q8RXY4,Q94AH7,A0A1P8AZ21,A0A1P8AZ29,A0A1P8AYW6,A0A1P8B7M8 A0A1P8B7L3_ARATH,O49437_ARATH,Q8RXY4_ARATH,Q94AH7_ARATH,A0A1P8AZ21_ARATH,A0A1P8AZ29_ARATH,A0A1P8AYW6_ARATH,A0A1P8B7M8_ARATH PQ-loop repeat family protein / transmembrane family protein,PQ-loop repeat family protein / transmembrane family protein (Uncharacterized protein AT4g20100),PQ-loop repeat family protein / transmembrane family protein (Uncharacterized protein At2g41050),PQ-loop repeat family protein / transmembrane family protein (Uncharacterized protein At4g36850) R-ATH-5223345; 34394,32256,41806,43824,39535,29743,34868,41807 PQ-loop repeat family protein / transmembrane family protein,PQ-loop repeat family protein / transmembrane family protein (Uncharacterized protein AT4g20100),PQ-loop repeat family protein / transmembrane family protein (Uncharacterized protein At2g41050),PQ-loop repeat family protein / transmembrane family protein (Uncharacterized protein At4g36850) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; basic amino acid transmembrane transporter activity [GO:0015174] locus:2119777;,locus:2063208;,locus:2115270; AT4G20100,AT2G41050,AT4G36850 PQ-loop repeat family protein Os01g0266800 protein (cDNA clone:J023019E21, full insert sequence) Q5NBM2 Q5NBM2_ORYSJ Os01g0266800 OSNPB_010266800 P0011D01.8 ENOG411EFA5 Q5PP65 C3H28_ARATH Zinc finger CCCH domain-containing protein 28 (AtC3H28) 27736 Zinc finger CCCH domain-containing protein 28 (AtC3H28) cytosol [GO:0005829]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 3'-UTR binding [GO:0003730]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; regulation of transcription, DNA-templated [GO:0006355] locus:2062476; AT2G35430 Zinc finger CCCH domain-containing protein 28 NA NA NA NA NA NA NA ENOG411DS5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Expressed protein (Os10g0484900 protein) Q8W361 Q8W361_ORYSJ Os10g0484900 LOC_Os10g34370 OSJNBa0029C15.26 OSNPB_100484900 ENOG411DS5R Q8H126 Q8H126_ARATH Selenoprotein O (Uncharacterized protein At5g13030) 71098 Selenoprotein O (Uncharacterized protein At5g13030) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2182265; AT5G13030 UPF0061 protein Os06g0320700 protein (Putative selenoprotein O) Q5ZA96 Q5ZA96_ORYSJ Os06g0320700 OSNPB_060320700 P0578B12.6 ENOG411DS5Y XBAT31 Q94B55,F4IJM9 XB31_ARATH,F4IJM9_ARATH Putative E3 ubiquitin-protein ligase XBAT31 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT31) (Protein XB3 homolog 1) (RING-type E3 ubiquitin transferase XB31),Uncharacterized protein FUNCTION: No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro. {ECO:0000269|PubMed:15644464}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 49610,48641 Putative E3 ubiquitin-protein ligase XBAT31 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT31) (Protein XB3 homolog 1) (RING-type E3 ubiquitin transferase XB31),Uncharacterized protein metal ion binding [GO:0046872]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567],integral component of membrane [GO:0016021] locus:2053205; AT2G28840 E3 ubiquitin-protein ligase E3 ubiquitin-protein ligase XB3 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XB3) (RING-type E3 ubiquitin transferase XB3) (XA21-binding protein 3),Os05g0112000 protein (Fragment) Q65XV2,A0A0P0WHE9,A0A0P0WH27 XB3_ORYSJ,A0A0P0WHE9_ORYSJ,A0A0P0WH27_ORYSJ XB3 Os05g0112000 LOC_Os05g02130 OsJ_16866 P0016H04.16,Os05g0112000 OSNPB_050112000 FUNCTION: E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro. {ECO:0000269|PubMed:17172358}. ENOG411EJRZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal Proteins L2 RNA binding domain Os10g0214132 protein A0A0N7KRK6 A0A0N7KRK6_ORYSJ Os10g0214132 OSNPB_100214132 ENOG411EJRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411EJRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat shock factor binding protein 1 NA NA NA NA NA NA NA ENOG411EJRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease E/G family NA NA NA NA NA NA NA ENOG411EJRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CPSF A subunit region NA NA NA NA NA NA NA ENOG411EJRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: N-alpha-acetyltransferase 25 NatB auxiliary subunit NA NA NA NA NA NA NA ENOG411EJRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II protein NA NA NA NA NA NA NA ENOG411EJRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GATA zinc finger NA NA NA NA NA NA NA ENOG411EJRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWI domain NA NA NA NA NA NA NA ENOG411EJRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase A chain NA NA NA NA NA NA NA ENOG411EJRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA One of the components of the core antenna complex of photosystem II. It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of photosystem II (By similarity) NA NA NA NA NA NA NA ENOG411EJRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EJRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NOT2 / NOT3 / NOT5 family NA NA NA NA NA NA NA ENOG411EJRE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuf2 family NA NA NA NA NA NA NA ENOG411EJRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoporin Nup120/160 NA NA NA NA NA NA NA ENOG411EJR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyllase NA NA NA NA NA NA NA ENOG411EJR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SpoU rRNA Methylase family NA NA NA NA NA NA NA ENOG411EJR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411EJR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA Polymerase NA NA NA NA NA NA NA ENOG411EJR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: MON2 homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EJR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Tetratricopeptide repeat domain 27 NA NA NA NA NA NA NA ENOG411EFAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: CW-type Zinc Finger Os07g0669800 protein (Fragment) A0A0P0X9Z7 A0A0P0X9Z7_ORYSJ Os07g0669800 OSNPB_070669800 ENOG411EFAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_TTF NA NA NA NA NA NA NA ENOG411EFAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFAX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH46 A0A1P8BB09,A0A1P8BAZ9,A0A1P8BB37,A0A1P8BAZ7,A0A1P8BB11 A0A1P8BB09_ARATH,A0A1P8BAZ9_ARATH,A0A1P8BB37_ARATH,A0A1P8BAZ7_ARATH,A0A1P8BB11_ARATH Uncharacterized protein (Fragment) 28344,21115,27566,21271,27760 Uncharacterized protein (Fragment) NA NA NA NA NA NA NA NA ENOG411EH45 Q5Q0G4,Q1G3S0 Q5Q0G4_ARATH,Q1G3S0_ARATH Uncharacterized protein 8617,8147 Uncharacterized protein locus:2016467;,locus:4010713683; AT1G19500,AT2G35765 NA NA NA NA NA NA NA NA ENOG411E59Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411E59P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411E59U MKM21.12,MUD12.5 Q8GXS6,Q9LUJ9,F4JJ97 Q8GXS6_ARATH,Q9LUJ9_ARATH,F4JJ97_ARATH Mitochondrial ribosomal protein L27 (Uncharacterized protein At5g39800) (Uncharacterized protein At5g39800/MKM21_90),At5g40080 (Mitochondrial ribosomal protein L27),Mitochondrial ribosomal protein L27 10476,10460,13951 Mitochondrial ribosomal protein L27 (Uncharacterized protein At5g39800) (Uncharacterized protein At5g39800/MKM21_90),At5g40080 (Mitochondrial ribosomal protein L27),Mitochondrial ribosomal protein L27 mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],mitochondrial large ribosomal subunit [GO:0005762]; ATP binding [GO:0005524]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2167072;,locus:2174910;,locus:4515103361; AT5G39800,AT5G40080,AT4G09012 ribosomal protein NA NA NA NA NA NA NA ENOG411E59W Q9LK28 Q9LK28_ARATH At3g27250 (Uncharacterized protein At3g27250) 31349 At3g27250 (Uncharacterized protein At3g27250) locus:2086488; AT3G27250 NA NA NA NA NA NA NA NA ENOG411E59V Q84W12 Q84W12_ARATH At4g16450 (NADH-ubiquinone oxidoreductase) (Uncharacterized protein At4g16450) ARA:AT4G16450-MONOMER; 11345 At4g16450 (NADH-ubiquinone oxidoreductase) (Uncharacterized protein At4g16450) membrane [GO:0016020]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; photorespiration [GO:0009853] locus:2130649; AT4G16450 NADH-ubiquinone oxidoreductase complex I 21 kDa subunit Os08g0431500 protein (Fragment),Os08g0431500 protein Q0J5I8,A0A0P0XGA2 Q0J5I8_ORYSJ,A0A0P0XGA2_ORYSJ Os08g0431500 Os08g0431500 OSNPB_080431500,Os08g0431500 OSNPB_080431500 ENOG411E59A Q9LUM1 LOR11_ARATH Protein LURP-one-related 11 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 26280 Protein LURP-one-related 11 locus:2091040; AT3G14260 LURP-one-related NA NA NA NA NA NA NA ENOG411E59F rps11 P56802 RR11_ARATH 30S ribosomal protein S11, chloroplastic 15024 30S ribosomal protein S11, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrial small ribosomal subunit [GO:0005763]; mRNA 5'-UTR binding [GO:0048027]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:504954698; ATCG00750 ribosomal protein S11 30S ribosomal protein S11, chloroplastic P0C464 RR11_ORYSJ rps11 LOC_Osp1g00670 Nip102 ENOG411E59I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP NA NA NA NA NA NA NA ENOG411E59K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calmodulin-like protein 1-like NA NA NA NA NA NA NA ENOG411EKFC ARR14,RR14 Q8L9Y3,A0A1P8AZZ3,A0A1P8B023 ARR14_ARATH,A0A1P8AZZ3_ARATH,A0A1P8B023_ARATH Two-component response regulator ARR14,Two-component response regulator,Response regulator 14 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.,FUNCTION: Transcriptional activator that binds specific DNA sequence. {ECO:0000256|PIRNR:PIRNR036392}. 43099,46426,35661 Two-component response regulator ARR14,Two-component response regulator,Response regulator 14 nucleus [GO:0005634]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; phosphorelay response regulator activity [GO:0000156]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; phosphorelay signal transduction system [GO:0000160]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in young leaf tissue. {ECO:0000269|PubMed:15173562}. locus:2065398; AT2G01760 REC NA NA NA NA NA NA NA ENOG411E591 ARPN Q8LG89 BABL_ARATH Basic blue protein (Plantacyanin) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:15908590}. FUNCTION: Forms a concentration gradient along the pollen tube growth path, with a lower level in the stigma papilla cell wall and a higher level in the transmitting tract extracellular matix of the style. {ECO:0000269|PubMed:15908590}. 14038 Basic blue protein (Plantacyanin) anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; extracellular matrix [GO:0031012]; proteinaceous extracellular matrix [GO:0005578]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; anther development [GO:0048653]; oxidation-reduction process [GO:0055114]; pollination [GO:0009856] DEVELOPMENTAL STAGE: Expressed in style and papilla cells when pollination occurs. Detected in the mature embryo sacs of ovules before and after fertilization. {ECO:0000269|PubMed:15908590}. TISSUE SPECIFICITY: Expressed in the inflorescence and in the transmitting tract of the pistil. Detected in roots, stems, cauline leaves, cotyledons, hypocotyls, guard cells, pistils, sepals, stamen filaments and vascular bundles of roots but not of leaves. Not expressed in petals, anthers or pollen. {ECO:0000269|PubMed:15908590}. locus:2056700; AT2G02850 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E593 ENODL21 F4K6R7 F4K6R7_ARATH Early nodulin-like protein 21 16502 Early nodulin-like protein 21 anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:4010713954; AT5G14345 Early nodulin-like protein NA NA NA NA NA NA NA ENOG411E592 O81297,F4HXM8 O81297_ARATH,F4HXM8_ARATH T14P8.17 (Uncharacterized protein AT4g02360),Uncharacterized protein 16700,16848 T14P8.17 (Uncharacterized protein AT4g02360),Uncharacterized protein locus:2133254;,locus:505006095; AT4G02360,AT1G02813 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411E595 F4J2H2 F4J2H2_ARATH Pollen Ole e 1 allergen and extensin family protein 19213 Pollen Ole e 1 allergen and extensin family protein locus:504955667; AT3G09925 pollen Ole e 1 allergen and extensin family protein Os10g0546100 protein (Pollen proteins Ole e I family protein) (Putative pollen-related protein) (cDNA, clone: J065047I23, full insert sequence) Q9AV31 Q9AV31_ORYSJ LOC_Os10g39890 Os10g0546100 OsJ_32350 OSJNBa0001O14.14 OSNPB_100546100 ENOG411E594 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0204100 protein Q7XB67 Q7XB67_ORYSJ P0431A02.22 Os07g0204100 OSNPB_070204100 ENOG411E597 GRXS2 Q8L8Z8 GRXS2_ARATH Monothiol glutaredoxin-S2 (AtGrxS2) (Protein ROXY 10) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 11039 Monothiol glutaredoxin-S2 (AtGrxS2) (Protein ROXY 10) cytoplasm [GO:0005737]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2183013; AT5G18600 Glutaredoxin NA NA NA NA NA NA NA ENOG411E596 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calvin cycle protein Os01g0303000 protein (Putative CP12) (cDNA clone:001-009-C09, full insert sequence) (cDNA clone:J033080D15, full insert sequence) (p0035H10.18 protein) Q9FP25 Q9FP25_ORYSJ P0035H10.18 Os01g0303000 B1146F03.30 OsJ_01448 OSNPB_010303000 ENOG411DRU5 Q8RWU9,F4IF80,Q84WU5,A0A1P8B4B2,A0A1P8B4B7,A0A1P8B6A6,A0A1P8B4A5,A0A1P8AWU5,A0A1P8AMH8,F4I6A5,A0A1P8AR63,A0A1P8AML6,A0A1P8AWS0,F4I5F8,F4JMF4,A0A1P8AR60,F4IF81,A0A1P8AWU7 Q8RWU9_ARATH,F4IF80_ARATH,Q84WU5_ARATH,A0A1P8B4B2_ARATH,A0A1P8B4B7_ARATH,A0A1P8B6A6_ARATH,A0A1P8B4A5_ARATH,A0A1P8AWU5_ARATH,A0A1P8AMH8_ARATH,F4I6A5_ARATH,A0A1P8AR63_ARATH,A0A1P8AML6_ARATH,A0A1P8AWS0_ARATH,F4I5F8_ARATH,F4JMF4_ARATH,A0A1P8AR60_ARATH,F4IF81_ARATH,A0A1P8AWU7_ARATH Protein kinase superfamily protein (Uncharacterized protein At4g24100),Protein kinase superfamily protein,Protein kinase superfamily protein (Uncharacterized protein At5g14720) 78747,75593,75364,78593,76666,76071,80673,59968,44304,53583,73479,54823,69033,67353,78427,75883,76013,67942 Protein kinase superfamily protein (Uncharacterized protein At4g24100),Protein kinase superfamily protein,Protein kinase superfamily protein (Uncharacterized protein At5g14720) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2135016;,locus:2185440;,locus:2034888;,locus:2016164;,locus:2132716;,locus:2019878; AT4G24100,AT1G79640,AT5G14720,AT1G23700,AT1G70430,AT4G10730 - STE kinases include homologs to sterile 7 sterile 11 and sterile 20 from yeast expressed Os06g0486400 protein (Putative oxidative-stress responsive),Os03g0114300 protein (Protein kinase, putative, expressed),Os10g0518800 protein (Protein kinase domain containing protein, expressed),Os02g0791700 protein,Os03g0114300 protein (Fragment) Q67WX3,Q10SQ6,Q337B2,A0A0N7KG86,A0A0P0VS53 Q67WX3_ORYSJ,Q10SQ6_ORYSJ,Q337B2_ORYSJ,A0A0N7KG86_ORYSJ,A0A0P0VS53_ORYSJ Os06g0486400 OSNPB_060486400 P0008F02.15,LOC_Os03g02320 Os03g0114300 OSNPB_030114300,LOC_Os10g37480 Os10g0518800 OSNPB_100518800,Os02g0791700 OSNPB_020791700,Os03g0114300 OSNPB_030114300 ENOG411DRU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os02g0329933 protein,Os02g0207100 protein (Fragment),Os02g0206400 protein Q67TS4,Q67TS1,A0A0N7KF75,A0A0P0VGA0,A0A0P0VG84,A0A0P0VG91 Q67TS4_ORYSJ,Q67TS1_ORYSJ,A0A0N7KF75_ORYSJ,A0A0P0VGA0_ORYSJ,A0A0P0VG84_ORYSJ,A0A0P0VG91_ORYSJ Os02g0206100 Os02g0206100 OSJNBb0056C19.33 OSNPB_020206100,Os02g0206700 OSNPB_020206700 P0235A04.2,Os02g0329933 OSNPB_020329933,Os02g0207400 OSNPB_020207400,Os02g0207100 OSNPB_020207100,Os02g0206400 OSNPB_020206400 ENOG411DRU7 GGP3,GGP5,GGP2 Q9M0A5,O82225,Q9M0A6 GGP3_ARATH,GGP5_ARATH,GGP2_ARATH Gamma-glutamyl peptidase 3 (EC 3.4.19.-),Gamma-glutamyl peptidase 5 (EC 3.4.19.-),Gamma-glutamyl peptidase 2 (EC 3.4.19.-) FUNCTION: Involved in glucosinolate biosynthesis. Hydrolyzes the gamma-glutamyl peptide bond of several glutathione (GSH) conjugates to produce Cys-Gly conjugates related to glucosinolates. The gamma-Glu-Cys-Gly-GSH conjugates are the sulfur-donating molecule in glucosinolate biosynthesis. Can use the GSH conjugate of the camalexin intermediate IAN (GS-IAN) as substrate. Required for the biosynthesis of camalexin, a pathogen-inducible phytoalexin with antibacterial and antifungal properties. {ECO:0000269|PubMed:21712415}.,FUNCTION: Involved in glucosinolate biosynthesis. Hydrolyzes the gamma-glutamyl peptide bond of several glutathione (GSH) conjugates to produce Cys-Gly conjugates related to glucosinolates. The gamma-Glu-Cys-Gly-GSH conjugates are the sulfur-donating molecule in glucosinolate biosynthesis. {ECO:0000250|UniProtKB:Q9M0A7}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:GQT-2803-MONOMER;,ARA:GQT-1768-MONOMER;,ARA:GQT-503-MONOMER; 3.4.19.- 28225,28312,28695 Gamma-glutamyl peptidase 3 (EC 3.4.19.-),Gamma-glutamyl peptidase 5 (EC 3.4.19.-),Gamma-glutamyl peptidase 2 (EC 3.4.19.-) cytosol [GO:0005829]; peptidase activity [GO:0008233]; glucosinolate metabolic process [GO:0019760],cytosol [GO:0005829]; peptidase activity [GO:0008233] locus:2118831;,locus:2061496;,locus:2118826; AT4G30550,AT2G23970,AT4G30540 glutamine amidotransferase Os02g0179200 protein (Putative glutamine amidotransferase class-I domain-containing protein) (cDNA clone:002-181-G04, full insert sequence),Glutamine synthetase-like protein (Os09g0424200 protein) Q6ETL5,Q69QJ1 Q6ETL5_ORYSJ,Q69QJ1_ORYSJ Os02g0179200 OsJ_05615 OSNPB_020179200 P0544B02.16,Os09g0424200 Os09g0424200 OSNPB_090424200 P0418B08.26 ENOG411DRU6 DER2.2,DER2.1 Q9ZS88,Q8VZ96 DER22_ARATH,DER21_ARATH Derlin-2.2 (AtDerlin2-2),Derlin-2.1 (AtDerlin2-1) FUNCTION: May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins. {ECO:0000250}. R-ATH-5358346;R-ATH-901032; 28098,28213 Derlin-2.2 (AtDerlin2-2),Derlin-2.1 (AtDerlin2-1) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2138952;,locus:2141652; AT4G04860,AT4G21810 May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins Derlin-2 (OsDerlin 2-1) Q851X7 DERL2_ORYSJ DER2 Os03g0852200 LOC_Os03g63520 OSJNBa0015N08.24 FUNCTION: May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins. {ECO:0000250}. ENOG411DRU1 VDAC5,VDAC2 Q9M2W6,Q9FJX3,F4IZ90,A0A1I9LMK6,F4K3R8 VDAC5_ARATH,VDAC2_ARATH,F4IZ90_ARATH,A0A1I9LMK6_ARATH,F4K3R8_ARATH Putative mitochondrial outer membrane protein porin 5 (Voltage-dependent anion-selective channel protein 5) (AtVDAC5) (VDAC-5),Mitochondrial outer membrane protein porin 2 (Voltage-dependent anion-selective channel protein 2) (AtVDAC2) (VDAC-2),Voltage dependent anion channel 5,Voltage dependent anion channel 2 DISRUPTION PHENOTYPE: Dwarf plants with lesion mimic phenotype and increased expression of the pathogenesis-related genes PR1, PR2 and PR5. Delayed flowering, impaired development of anthers and short siliques with sterile seeds. {ECO:0000269|PubMed:21705391}. FUNCTION: Putative channel that allows diffusion of small hydrophilic molecules through membranes. {ECO:0000250}.,FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant growth and development at the vegetative and reproductive stages. Is important for leaf and pollen development and mitochondrial membrane potential steady state. May be involved in ABA-mediated early seedling development and disease resistance. {ECO:0000250, ECO:0000269|PubMed:19582214, ECO:0000269|PubMed:21705391}. MISCELLANEOUS: Plants silencing VDAC2 show an ABA-insensitive phenotype during early seedling development under ABA treatment. Parkinson's disease (05012),HTLV-I infection (05166),Huntington's disease (05016),Calcium signaling pathway (04020) 24631,29595,14105,11623,32905 Putative mitochondrial outer membrane protein porin 5 (Voltage-dependent anion-selective channel protein 5) (AtVDAC5) (VDAC-5),Mitochondrial outer membrane protein porin 2 (Voltage-dependent anion-selective channel protein 2) (AtVDAC2) (VDAC-2),Voltage dependent anion channel 5,Voltage dependent anion channel 2 mitochondrial outer membrane [GO:0005741]; pore complex [GO:0046930]; porin activity [GO:0015288]; ion transport [GO:0006811],mitochondrial outer membrane [GO:0005741]; pore complex [GO:0046930]; porin activity [GO:0015288]; ion transport [GO:0006811]; regulation of growth [GO:0040008],mitochondrial outer membrane [GO:0005741]; transmembrane transport [GO:0055085],cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; membrane [GO:0016020]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; voltage-gated anion channel activity [GO:0008308]; response to bacterium [GO:0009617]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Expressed in root tips, steles, leaves, sepals, petals, stamen and pistils. {ECO:0000269|PubMed:21705391}. locus:2097425;,locus:2158606; AT3G49920,AT5G67500 membrane protein porin Mitochondrial outer membrane protein porin 5 (Voltage-dependent anion-selective channel protein 5) (OsVDAC5) Q84P97 VDAC5_ORYSJ VDAC5 Os03g0202200 LOC_Os03g10510 OsJ_09816 FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). {ECO:0000250}. ENOG411DRU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os07g0235800 protein (Fragment),Os03g0818800 protein A0A0P0X4I8,A0A0P0W4R4 A0A0P0X4I8_ORYSJ,A0A0P0W4R4_ORYSJ Os07g0235800 OSNPB_070235800,Os03g0818800 OSNPB_030818800 ENOG411DRU3 PILS6 Q9LZN2 PILS6_ARATH Protein PIN-LIKES 6 (Auxin efflux carrier-like protein 6) FUNCTION: Involved in cellular auxin homeostasis by regulating auxin metabolism. Regulates intracellular auxin accumulation at the endoplasmic reticulum and thus auxin availability for nuclear auxin signaling. {ECO:0000305|PubMed:22504182}. 46465 Protein PIN-LIKES 6 (Auxin efflux carrier-like protein 6) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in seedlings, rosette and cauline leaves, stems and flowers. {ECO:0000269|PubMed:22504182}. locus:2185123; AT5G01990 auxin efflux carrier Os01g0818000 protein (cDNA clone:J023034N13, full insert sequence) (cDNA clone:J023041H12, full insert sequence),Os05g0481900 protein (cDNA clone:002-115-B08, full insert sequence) Q0JI87,Q5KQI0 Q0JI87_ORYSJ,Q5KQI0_ORYSJ Os01g0818000 Os01g0818000 OSNPB_010818000,Os05g0481900 OSJNBa0095J22.10 OSNPB_050481900 ENOG411DRU2 Q94C98,A0A1P8B4Z4,F4J077 Q94C98_ARATH,A0A1P8B4Z4_ARATH,F4J077_ARATH Topoisomerase II-associated protein PAT1 (Uncharacterized protein At4g14990),Topoisomerase II-associated protein PAT1 FUNCTION: Activator of mRNA decapping. Involved in mRNA decay via decapping. {ECO:0000250|UniProtKB:Q0WPK4}.,FUNCTION: Activator of mRNA decapping. Involved in mRNA decay via decapping (By similarity). Involved in the regulation of root stem cell niche identity. Maintains root stem cell niche stability through the interaction with the negative regulator of jasmonate signaling AFPH2/NINJA, and the regulation of cell division (PubMed:26956135). {ECO:0000250|UniProtKB:Q0WPK4, ECO:0000269|PubMed:26956135}. 86514,78141,85646 Topoisomerase II-associated protein PAT1 (Uncharacterized protein At4g14990),Topoisomerase II-associated protein PAT1 P-body [GO:0000932]; isomerase activity [GO:0016853]; mRNA binding [GO:0003729]; cytoplasmic mRNA processing body assembly [GO:0033962]; deadenylation-dependent decapping of nuclear-transcribed mRNA [GO:0000290],isomerase activity [GO:0016853],endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; P-body [GO:0000932]; isomerase activity [GO:0016853]; RNA binding [GO:0003723]; cytoplasmic mRNA processing body assembly [GO:0033962]; deadenylation-dependent decapping of nuclear-transcribed mRNA [GO:0000290]; stem cell population maintenance [GO:0019827] locus:2129565;,locus:2091618; AT4G14990,AT3G22270 expressed protein Os02g0295700 protein (cDNA clone:J023054B07, full insert sequence),Os02g0294700 protein (Fragment),Os02g0295700 protein (Fragment) Q6K5B7,A0A0P0VHV7,A0A0P0VHW1 Q6K5B7_ORYSJ,A0A0P0VHV7_ORYSJ,A0A0P0VHW1_ORYSJ Os02g0295700 OsJ_06343 OSJNBa0073G17.27 OSNPB_020295700,Os02g0294700 OSNPB_020294700,Os02g0295700 OSNPB_020295700 ENOG411DRU9 Q9C893,Q66GS4,Q6NM31 Q9C893_ARATH,Q66GS4_ARATH,Q6NM31_ARATH Proteinase inhibitor I4, serpin (DUF716) (Uncharacterized protein F7A10.19),At5g19870 (Transmembrane epididymal protein (DUF716)),At1g55240 (Proteinase inhibitor I4, serpin (DUF716)) (Uncharacterized protein At1g55240) 33764,31637,35027 Proteinase inhibitor I4, serpin (DUF716) (Uncharacterized protein F7A10.19),At5g19870 (Transmembrane epididymal protein (DUF716)),At1g55240 (Proteinase inhibitor I4, serpin (DUF716)) (Uncharacterized protein At1g55240) integral component of membrane [GO:0016021] locus:2035746;,locus:2147620;,locus:2035736; AT1G55230,AT5G19870,AT1G55240 Family of unknown function (DUF716) Os08g0462800 protein (cDNA clone:002-152-A01, full insert sequence),Os09g0444900 protein (Fragment) Q6YUB7,A0A0P0XME7,A0A0P0XNJ7 Q6YUB7_ORYSJ,A0A0P0XME7_ORYSJ,A0A0P0XNJ7_ORYSJ Os08g0462800 Os08g0462800 B1111C03.20 B1116H04.8 OSNPB_080462800,Os09g0444900 OSNPB_090444900 ENOG411DRU8 PCMP-H43 Q9LTV8 PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 77936 Pentatricopeptide repeat-containing protein At3g12770 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mitochondrial mRNA modification [GO:0080156] locus:2087735; AT3G12770 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DRUU ZHD11 Q9SEZ1 ZHD11_ARATH Zinc-finger homeodomain protein 11 (AtZHD11) (Transcription factor HB29) (AtHB-29) (Zinc finger homeodomain transcription factor 1) DISRUPTION PHENOTYPE: No visible phenotype. Increased sensitivity to salt stress. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21536906}. FUNCTION: Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. 26284 Zinc-finger homeodomain protein 11 (AtZHD11) (Transcription factor HB29) (AtHB-29) (Zinc finger homeodomain transcription factor 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}. locus:2026734; AT1G69600 ZF-HD protein dimerisation region Zinc-finger homeodomain protein 10 (OsZHD10),Os08g0438400 protein Q6Z528,A0A0P0XGE2 ZHD10_ORYSJ,A0A0P0XGE2_ORYSJ ZHD10 Os08g0438400 LOC_Os08g34010 OSJNBa0016C11.32 P0524F03.1,Os08g0438400 OSNPB_080438400 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411DRUT Q9LJX5 BRTL1_ARATH Probable mitochondrial adenine nucleotide transporter BTL1 (Adenine nucleotide transporter BT1-like protein 1) FUNCTION: Probable mitochondrial adenylate carrier that catalyzes the transport of ATP, ADP and AMP. {ECO:0000250}. 37904 Probable mitochondrial adenine nucleotide transporter BTL1 (Adenine nucleotide transporter BT1-like protein 1) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839] locus:2087545; AT3G20240 protein brittle-1 chloroplastic Os09g0497000 protein,Os08g0520000 protein (Putative mitochondrial energy transfer protein) (cDNA clone:001-117-E10, full insert sequence) Q0J0J7,Q6YZW6 Q0J0J7_ORYSJ,Q6YZW6_ORYSJ Os09g0497000 Os09g0497000 OsJ_29880 OSNPB_090497000,Os08g0520000 Os08g0520000 OJ1003_A09.8 OsJ_27959 OSNPB_080520000 P0689E12.32 ENOG411DRUW ATIM Q9FLX0,A0A1P8B9S9 Q9FLX0_ARATH,A0A1P8B9S9_ARATH Timeless family protein 128902,131453 Timeless family protein locus:2176902; AT5G52910 Timeless protein C terminal region NA NA NA NA NA NA NA ENOG411DRUV PER60 Q9FMR0 PER60_ARATH Peroxidase 60 (Atperox P60) (EC 1.11.1.7) (ATP14a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G22410-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 36016 Peroxidase 60 (Atperox P60) (EC 1.11.1.7) (ATP14a) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in roots, slightly in leaves. locus:2176402; AT5G22410 peroxidase Peroxidase (EC 1.11.1.7) Q7XC08 Q7XC08_ORYSJ OSJNBa0057L21.19 prx129 LOC_Os10g41720 Os10g0566800 OsJ_32503 OSNPB_100566800 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DRUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyl-CpG binding domain Os08g0485700 protein (cDNA clone:J023004M17, full insert sequence),Os08g0485600 protein (cDNA clone:J013149G12, full insert sequence),Os08g0485600 protein (Fragment),Os08g0485700 protein (Fragment) Q6ZDS2,Q6YTR7,A0A0P0XHC0,A0A0P0XHX0,A0A0P0XHI4 Q6ZDS2_ORYSJ,Q6YTR7_ORYSJ,A0A0P0XHC0_ORYSJ,A0A0P0XHX0_ORYSJ,A0A0P0XHI4_ORYSJ Os08g0485700 OsJ_27725 OSNPB_080485700 P0481F05.12,P0419H09.37-1 P0481F05.7-1 Os08g0485600 OsJ_27723 OSNPB_080485600,Os08g0485600 OSNPB_080485600,Os08g0485700 OSNPB_080485700 ENOG411DRUP Q9SY73 PTALR_ARATH NADPH-dependent pterin aldehyde reductase (EC 1.1.1.-) DISRUPTION PHENOTYPE: Slight reduction in seed pterin aldehyde reductase activity, especially at low temperature. {ECO:0000269|PubMed:17550420}. Mutants have reduced seed 18:1 delta nine fatty acids. An analogous change in fatty acids is seen in the leaf but it is more subtle than in seed. Abnormal fatty acid levels-R. Last-2009 FUNCTION: NADPH-dependent pterin aldehyde reductase involved in pterin aldehyde salvage during folate turnover. Catalyzes the reduction of diverse aromatic and aliphatic aldehydes (e.g. acetaldehyde, n-propanal, 1-naphthaldehyde, benzaldehyde, cinnamaldehyde, n-butanal, n-hexanal, n-pentanal, 2-naphthaldehyde, n-octanal, n-nonanal and n-heptanal), in addition to the conversion of pterin-6-aldehyde (PtCHO) to 6-hydroxymethylpterin (PtCH(2)OH), and the conversion of dihydropterin-6-aldehyde (H(2)PtCHO) to 6-hydroxymethyldihydropterin (H(2)PtCH(2)OH) (PubMed:17550420). Cannot reduce the pterin ring (PubMed:17220358). {ECO:0000269|PubMed:17550420, ECO:0000305|PubMed:17220358}. ARA:AT1G10310-MONOMER; 1.1.1.- 25318 NADPH-dependent pterin aldehyde reductase (EC 1.1.1.-) cytosol [GO:0005829]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616]; folic acid-containing compound metabolic process [GO:0006760] TISSUE SPECIFICITY: Mostly expressed in seeds, and, to a lower extent, in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:17550420}. locus:2012793; AT1G10310 3-oxoacyl- acyl-carrier-protein reductase Os02g0557700 protein (cDNA clone:J013002N01, full insert sequence) Q0E0D3 Q0E0D3_ORYSJ Os02g0557700 Os02g0557700 OSNPB_020557700 ENOG411DRUS GGPPS1 P34802,Q9ZU77 GGPP1_ARATH,GGPP7_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic (GGPP synthase 1) (GGPS1) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 1) (Dimethylallyltranstransferase 1) (EC 2.5.1.1) (Farnesyl diphosphate synthase 1) (Farnesyltranstransferase 1) (EC 2.5.1.29) (Geranyltranstransferase 1) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 7, chloroplastic (GGPP synthase 7) (GGPS7) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 7) (Dimethylallyltranstransferase 7) (EC 2.5.1.1) (Farnesyl diphosphate synthase 7) (Farnesyltranstransferase 7) (EC 2.5.1.29) (Geranyltranstransferase 7) (EC 2.5.1.10) FUNCTION: Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase large subunit. In vitro, the large subunit catalyzes mainly the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate while the small subunit alone is inactive. Upon association of the two subunits, the product profile changes and the production of gerany-diphosphate is strongly increased. {ECO:0000269|PubMed:19482937}.,FUNCTION: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. {ECO:0000250}. PATHWAY: Isoprenoid biosynthesis; farnesyl diphosphate biosynthesis; farnesyl diphosphate from geranyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranyl diphosphate biosynthesis; geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranylgeranyl diphosphate biosynthesis; geranylgeranyl diphosphate from farnesyl diphosphate and isopentenyl diphosphate: step 1/1. ARA:AT4G36810-MONOMER;MetaCyc:AT4G36810-MONOMER;,ARA:AT2G18620-MONOMER; 2.5.1.-; 2.5.1.1; 2.5.1.29; 2.5.1.10 40174,37390 Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic (GGPP synthase 1) (GGPS1) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 1) (Dimethylallyltranstransferase 1) (EC 2.5.1.1) (Farnesyl diphosphate synthase 1) (Farnesyltranstransferase 1) (EC 2.5.1.29) (Geranyltranstransferase 1) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 7, chloroplastic (GGPP synthase 7) (GGPS7) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 7) (Dimethylallyltranstransferase 7) (EC 2.5.1.1) (Farnesyl diphosphate synthase 7) (Farnesyltranstransferase 7) (EC 2.5.1.29) (Geranyltranstransferase 7) (EC 2.5.1.10) chloroplast [GO:0009507]; cytosol [GO:0005829]; etioplast [GO:0009513]; plastid [GO:0009536]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; embryo development ending in seed dormancy [GO:0009793]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386]; isoprenoid biosynthetic process [GO:0008299]; monoterpene biosynthetic process [GO:0043693],chloroplast [GO:0009507]; intracellular [GO:0005622]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386]; isoprenoid biosynthetic process [GO:0008299] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:10759500}. locus:2115450;,locus:2046283; AT4G36810,AT2G18620 geranylgeranyl pyrophosphate synthase Os07g0580900 protein (Putative geranylgeranyl diphosphate synthase) (cDNA clone:J023007O22, full insert sequence) (cDNA clone:J033030K23, full insert sequence),Os01g0248701 protein,Os05g0235701 protein (Fragment) Q7XI92,A0A0P0V0B7,A0A0P0WJL3 Q7XI92_ORYSJ,A0A0P0V0B7_ORYSJ,A0A0P0WJL3_ORYSJ Os07g0580900 Os07g0580900 OJ1301_C12.3 OSNPB_070580900 P0453G03.27,Os01g0248701 OSNPB_010248701,Os05g0235701 OSNPB_050235701 ENOG411DRUR CBP1 Q9ZV34,A0A1P8B068 Q9ZV34_ARATH,A0A1P8B068_ARATH At2g28790 (Pathogenesis-related thaumatin superfamily protein) (Putative thaumatin) (Thaumatin-like cytokinin binding protein),Pathogenesis-related thaumatin superfamily protein 27018,30183 At2g28790 (Pathogenesis-related thaumatin superfamily protein) (Putative thaumatin) (Thaumatin-like cytokinin binding protein),Pathogenesis-related thaumatin superfamily protein plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506] locus:2053215; AT2G28790 osmotin-like protein Os01g0839900 protein (Putative thaumatin-like cytokinin-binding protein) (cDNA clone:001-028-A02, full insert sequence) Q943L0 Q943L0_ORYSJ Os01g0839900 Os01g0839900 OsJ_04023 OSNPB_010839900 P0031D11.36 P0408C03.11 ENOG411DRUY Q9SZ83 Y4967_ARATH Uncharacterized oxidoreductase At4g09670 (EC 1.-.-.-) ARA:AT4G09670-MONOMER; 1.-.-.- 39562 Uncharacterized oxidoreductase At4g09670 (EC 1.-.-.-) cytosol [GO:0005829]; oxidoreductase activity [GO:0016491] locus:2118440; AT4G09670 )-oxidoreductase Os10g0403700 protein A0A0P0XUE2 A0A0P0XUE2_ORYSJ Os10g0403700 OSNPB_100403700 ENOG411DRUX PAP15 Q9SFU3,A0A1I9LLI7 PPA15_ARATH,A0A1I9LLI7_ARATH Purple acid phosphatase 15 (EC 3.1.3.-) (EC 3.1.3.2) (Phytase),Purple acid phosphatase (EC 3.1.3.2) Low pollen germination rate-B. Lim-2009 FUNCTION: Acid phosphatase activity with p-nitrophenyl phosphate (pNPP), D-myoinositol 1-phosphate (Ins(1)P1), phytic acid and Myo-inositol hexakisphosphate. Low or no activity with Glc-6-P and ATP. Confers shoot growth stimulation, enhanced salt and osmotic stress tolerance, and ABA insensitivity. May modulate ascorbic acid (AsA) levels by controlling the input of myoinositol into this branch of AsA biosynthesis. {ECO:0000269|PubMed:18065557}. ARA:AT3G07130-MONOMER; 3.1.3.2; 3.1.3.-; 3.1.3.2,3.1.3.2 60435,64531 Purple acid phosphatase 15 (EC 3.1.3.-) (EC 3.1.3.2) (Phytase),Purple acid phosphatase (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; pollen germination [GO:0009846]; seed germination [GO:0009845],acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908, ECO:0000269|PubMed:18065557}. locus:2098500; AT3G07130 Purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2) A0A0P0W5I6 A0A0P0W5I6_ORYSJ Os03g0848200 OSNPB_030848200 ENOG411DRUZ PKP3 Q93Z53 PKP3_ARATH Plastidial pyruvate kinase 3, chloroplastic (PKp3) (EC 2.7.1.40) (Pyruvate kinase I) (Pyruvate kinase isozyme B2, chloroplastic) (PKP-BETA2) (Plastidic pyruvate kinase beta subunit 2) FUNCTION: Required for plastidial pyruvate kinase activity. {ECO:0000250}. PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5. 2.7.1.40 62615 Plastidial pyruvate kinase 3, chloroplastic (PKp3) (EC 2.7.1.40) (Pyruvate kinase I) (Pyruvate kinase isozyme B2, chloroplastic) (PKP-BETA2) (Plastidic pyruvate kinase beta subunit 2) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; seed maturation [GO:0010431] TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, inflorescences, siliques, pollen, seeds and flowers. {ECO:0000269|PubMed:17557808, ECO:0000269|PubMed:17892448}. locus:2033760; AT1G32440 Pyruvate kinase Pyruvate kinase (EC 2.7.1.40),Pyruvate kinase (EC 2.7.1.40) (Fragment) Q8S7N6,A0A0P0XXL9 Q8S7N6_ORYSJ,A0A0P0XXL9_ORYSJ LOC_Os10g42100 Os10g0571200 OSJNBa0095C07.5 OSNPB_100571200,Os10g0571200 OSNPB_100571200 ENOG411DRUE AOR Q9ZUC1 AOR_ARATH NADPH-dependent alkenal/one oxidoreductase, chloroplastic (AtAOR) (EC 1.3.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal conditions, but enhanced susceptibility to methyl viologen. {ECO:0000269|PubMed:22575657}. FUNCTION: Reduces the double bond in short-chain unsaturated carbonyls (PubMed:21169366). Acts preferentially on alpha,beta-unsaturated ketones rather on alpha,beta-undaturated aldehydes (PubMed:21169366). Has no activity with (E)-2-hexenal and (E)-2-pentenal (PubMed:21169366). Contributes to detoxify stromal reactive carbonyls produced under oxidative stress (PubMed:22575657). {ECO:0000269|PubMed:21169366, ECO:0000269|PubMed:22575657}. ARA:AT1G23740-MONOMER;MetaCyc:AT1G23740-MONOMER; 1.3.1.- 40986 NADPH-dependent alkenal/one oxidoreductase, chloroplastic (AtAOR) (EC 1.3.1.-) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; stromule [GO:0010319]; thylakoid [GO:0009579]; 2-alkenal reductase (NADP+) activity [GO:0035798]; enone reductase activity [GO:0035671]; zinc ion binding [GO:0008270]; oxidation-reduction process [GO:0055114]; response to cold [GO:0009409] locus:2034802; AT1G23740 Quinone oxidoreductase-like protein At1g23740 Os08g0379400 protein (Putative oxidoreductase, zinc-binding) (cDNA clone:001-024-D02, full insert sequence) (cDNA clone:006-308-C06, full insert sequence) (cDNA clone:J023019N13, full insert sequence),Os08g0379400 protein (Fragment) Q7EYM8,A0A0P0XG27 Q7EYM8_ORYSJ,A0A0P0XG27_ORYSJ Os08g0379400 OsJ_27134 OSJNBb0011E04.125 OSNPB_080379400 P0709D11.15,Os08g0379400 OSNPB_080379400 ENOG411DRUD Q9FVS1 FBK23_ARATH F-box/kelch-repeat protein At1g57790 40897 F-box/kelch-repeat protein At1g57790 locus:2009430; AT1G57790 F-box Kelch-repeat protein Os08g0448300 protein,Os01g0522700 protein Q6ZCS7,A0A0P0V3R6 Q6ZCS7_ORYSJ,A0A0P0V3R6_ORYSJ Os08g0448300 OsJ_27514 OSNPB_080448300 P0409A07.24,Os01g0522700 OSNPB_010522700 ENOG411DRUG MCL19.3 Q9FNM3,F4JZX8,A0A1P8B9B1,F4JC74,F4J390 Q9FNM3_ARATH,F4JZX8_ARATH,A0A1P8B9B1_ARATH,F4JC74_ARATH,F4J390_ARATH CRN (Crooked neck) protein (Crooked neck protein, putative / cell cycle protein),Crooked neck protein, putative / cell cycle protein,Tetratricopeptide repeat (TPR)-like superfamily protein R-ATH-72163; 80895,84528,82009,78102,50109 CRN (Crooked neck) protein (Crooked neck protein, putative / cell cycle protein),Crooked neck protein, putative / cell cycle protein,Tetratricopeptide repeat (TPR)-like superfamily protein catalytic step 1 spliceosome [GO:0071012]; catalytic step 2 spliceosome [GO:0071013]; post-mRNA release spliceosomal complex [GO:0071014]; precatalytic spliceosome [GO:0071011]; prespliceosome [GO:0071010]; Prp19 complex [GO:0000974]; spliceosomal complex assembly [GO:0000245],nucleus [GO:0005634]; mRNA processing [GO:0006397] locus:2161363;,locus:2152965;,locus:2089999;,locus:2080853; AT5G45990,AT5G41770,AT3G13210,AT3G51110 Crooked neck protein Os05g0289400 protein (Putative crn) (Putative crooked neck protein) (cDNA clone:J023095B21, full insert sequence),Os06g0523800 protein (Os06g0523900 protein),Crooked neck protein, putative, expressed (Os10g0328700 protein) (Putative crooked neck protein) (cDNA clone:J023047D02, full insert sequence),Os05g0289400 protein (Fragment) Q75HS3,C7J4B5,Q8S5Y7,A0A0P0WK45 Q75HS3_ORYSJ,C7J4B5_ORYSJ,Q8S5Y7_ORYSJ,A0A0P0WK45_ORYSJ P0587F01.11 Os05g0289400 OSNPB_050289400 P0628H02.1,Os06g0523900 Os06g0523800 OSNPB_060523900,OSJNBa0073L20.20 LOC_Os10g18150 Os10g0328700 OSNPB_100328700,Os05g0289400 OSNPB_050289400 ENOG411DRUF Q9CA58 PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 85770 Putative pentatricopeptide repeat-containing protein At1g74580 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2019085; AT1G74580 Pentatricopeptide repeat-containing protein Os07g0101200 protein (Putative fertility restorer homologue),Os07g0101300 protein Q69L95,A0A0P0X1N4 Q69L95_ORYSJ,A0A0P0X1N4_ORYSJ Os07g0101200 Os07g0101200 B1026C12.18 OSNPB_070101200,Os07g0101300 OSNPB_070101300 ENOG411DRUA ML4,ML1,ML5 Q9LYN7,Q8W4I9,Q8VWF5,A0A1P8BBU0 AML4_ARATH,AML1_ARATH,AML5_ARATH,A0A1P8BBU0_ARATH Protein MEI2-like 4 (AML4) (MEI2-like protein 4),Protein MEI2-like 1 (AML1) (MEI2-like protein 1),Protein MEI2-like 5 (AML5) (MEI2-like protein 5),MEI2-like protein 1 DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:15720729}. No visible phenotype.,One quarter of the seedlings were arrested at the seedling stage failing to grow true leaves. Scanning electron microscopy revealed that leaf primordia were initiated but their further growth and expansion was largely delayed or did not take place. FUNCTION: Probable RNA-binding protein that plays a role in meiosis and vegetative growth. {ECO:0000269|PubMed:15720729, ECO:0000269|PubMed:16473967}.,FUNCTION: Probable RNA-binding transcriptional activator that plays a role in meiosis and vegetative growth. May be a downstream effector of TOR signaling pathway and recruited by RAPTOR1 for TOR substrate. {ECO:0000269|PubMed:15720729, ECO:0000269|PubMed:16473967}. 99890,100788,88212,99987 Protein MEI2-like 4 (AML4) (MEI2-like protein 4),Protein MEI2-like 1 (AML1) (MEI2-like protein 1),Protein MEI2-like 5 (AML5) (MEI2-like protein 5),MEI2-like protein 1 mRNA binding [GO:0003729]; meiotic cell cycle [GO:0051321]; positive regulation of growth [GO:0045927]; positive regulation of meiotic nuclear division [GO:0045836],mRNA binding [GO:0003729]; meiotic cell cycle [GO:0051321]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],RNA binding [GO:0003723] DEVELOPMENTAL STAGE: Expressed throughout the meristem during embryonic and vegetative development. Expressed in floral organogenic regions. {ECO:0000269|PubMed:15356386}.,DEVELOPMENTAL STAGE: Expressed in the embryo at the heart and torpedo stages. Weakly expressed throughout the vegetative shoot apex. Highly expressed in organogenic regions of floral apices. {ECO:0000269|PubMed:15356386}. TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:16473967, ECO:0000269|PubMed:9287109}. locus:2182885;,locus:2156166;,locus:2013583; AT5G07290,AT5G61960,AT1G29400 Mei2-like Protein MEI2-like 2 (OML2) (MEI2-like protein 2),Protein MEI2-like 4 (OML4) (MEI2-like protein 4),Os02g0719800 protein,Os02g0719800 protein (Fragment) Q6ZI17,Q64M78,A0A0P0VNW4,A0A0P0VP84 OML2_ORYSJ,OML4_ORYSJ,A0A0P0VNW4_ORYSJ,A0A0P0VP84_ORYSJ ML2 Os02g0719800 LOC_Os02g48790 OJ1008_D06.12-1,ML4 Os02g0517531 LOC_Os02g31290 OsJ_06913 OSJNBa0004O05.27,Os02g0719800 OSNPB_020719800 FUNCTION: Probable RNA-binding protein that may play a role in growth regulation. {ECO:0000250}. ENOG411DRUC F4KDI6 F4KDI6_ARATH Transmembrane protein 107676 Transmembrane protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; pollen exine formation [GO:0010584] locus:2155846; AT5G58100 NA Os02g0469200 protein (Fragment),Os02g0469200 protein,Os03g0570200 protein A0A0P0VIX3,A0A0N7KF97,A0A0P0W0D3 A0A0P0VIX3_ORYSJ,A0A0N7KF97_ORYSJ,A0A0P0W0D3_ORYSJ Os02g0469200 OSNPB_020469200,Os03g0570200 OSNPB_030570200 ENOG411DRUB CAC3 Q9LD43 ACCA_ARATH Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic (ACCase subunit alpha) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (EC 6.4.1.2) FUNCTION: Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA (By similarity). {ECO:0000250}. PATHWAY: Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1. ARA:AT2G38040-MONOMER; 6.4.1.2 85306 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic (ACCase subunit alpha) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (EC 6.4.1.2) acetyl-CoA carboxylase complex [GO:0009317]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; plastid [GO:0009536]; acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295] TISSUE SPECIFICITY: Accumulates in fatty acids synthesizing tissues such as embryos, expanding leaves, flower buds, flowers, and developing siliques. {ECO:0000269|PubMed:10759501}. locus:2065654; AT2G38040 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha NA NA NA NA NA NA NA ENOG411DRUM MTERF4 Q9ZT96 MTEF4_ARATH Transcription termination factor MTERF4, chloroplastic (Mitochondrial transcription termination factor 4) (Protein BELAYA SMERT') (Protein RUGOSA2) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous, due to growth arrest at the late globular stage. {ECO:0000269|PubMed:21464319}. FUNCTION: Transcription termination factor required for processing and steady-state levels of plastid transcripts. Required for splicing of the chloroplastic Clp protease (ClpP) group IIa intron. Required for maturation of 16S rRNA and 23S rRNA in the chloroplast. Essential for embryogenesis (PubMed:21464319). Required for the maintenance of the correct levels of transcripts in the mitochondria and chloroplasts. {ECO:0000269|PubMed:21464319}. "MISCELLANEOUS: ""BELAYA SMERT'"" means white death in Russian. {ECO:0000303|PubMed:21464319}." 61549 Transcription termination factor MTERF4, chloroplastic (Mitochondrial transcription termination factor 4) (Protein BELAYA SMERT') (Protein RUGOSA2) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380]; rRNA transcription from plastid promoter [GO:0042794]; transcription from plastid promoter [GO:0042793] locus:2139394; AT4G02990 mitochondrial transcription termination factor family protein Transcription termination factor MTERF4, chloroplastic (Mitochondrial transcription termination factor 4),Os09g0440600 protein Q6AUK6,Q69P81 MTEF4_ORYSJ,Q69P81_ORYSJ Os05g0404000 LOC_Os05g33500 OsJ_18494 OSJNBb0006J12.15,Os09g0440600 OJ1344_B01.30 OSNPB_090440600 FUNCTION: Transcription termination factor required for processing and steady-state levels of plastid transcripts. Required for splicing of the chloroplastic group II intron. Required for the accumulation of 16S and 23S ribosomes. {ECO:0000250|UniProtKB:B6TGN4}. ENOG411DRUN CYP57 Q6Q152 CPY57_ARATH Peptidyl-prolyl cis-trans isomerase CYP57 (PPIase CYP57) (EC 5.2.1.8) (Cyclophilin of 57 kDa) (Cyclophilin-57) DISRUPTION PHENOTYPE: Increased susceptibility to P.syringae infection. {ECO:0000269|PubMed:24440291}. FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Involved in plant response to pathogen infection by increasing PAD4 expression in absence of EDS1 up-regulation. {ECO:0000250, ECO:0000269|PubMed:24440291}. R-ATH-72163; 5.2.1.8 56515 Peptidyl-prolyl cis-trans isomerase CYP57 (PPIase CYP57) (EC 5.2.1.8) (Cyclophilin of 57 kDa) (Cyclophilin-57) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2123822; AT4G33060 Peptidyl-prolyl cis-trans isomerase Os01g0582400 protein Q0JLQ1 Q0JLQ1_ORYSJ Os01g0582400 Os01g0582400 OsJ_02360 OSNPB_010582400 FUNCTION: PPIases accelerate the folding of proteins. {ECO:0000256|SAAS:SAAS01033863}. ENOG411DRUI A8MQN4,B3H7B7 A8MQN4_ARATH,B3H7B7_ARATH Calcineurin-like metallo-phosphoesterase superfamily protein 60031,51167 Calcineurin-like metallo-phosphoesterase superfamily protein endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; hydrolase activity [GO:0016787]; ER to Golgi vesicle-mediated transport [GO:0006888]; GPI anchor biosynthetic process [GO:0006506],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; ER to Golgi vesicle-mediated transport [GO:0006888] locus:2024867; AT1G53710 Cell division control protein Os03g0397300 protein (Putative cell division control protein) (Ser/Thr protein phosphatase family protein, expressed) (cDNA clone:J023089F18, full insert sequence) Q84MV9 Q84MV9_ORYSJ Os03g0397300 LOC_Os03g27950 Os03g0397300 Os03g27950 OsJ_11157 OSNPB_030397300 ENOG411DRUH GAI,RGA Q9LQT8,Q9SLH3 GAI_ARATH,RGA_ARATH DELLA protein GAI (GRAS family protein 3) (AtGRAS-3) (Gibberellic acid-insensitive mutant protein) (Restoration of growth on ammonia protein 2),DELLA protein RGA (GAI-related sequence) (GRAS family protein 10) (AtGRAS-10) (Repressor on the ga1-3 mutant) (Restoration of growth on ammonia protein 1) DISRUPTION PHENOTYPE: Rga, gai, rgl1, rgl2 and rgl3 pentuple mutant displays constitutive GA responses even in the absence of GA treatment. {ECO:0000269|PubMed:23482857}. Early flowering compared to wild type.,No visible phenotype.,The initiation of abaxial trichomes occurs marginally earlier than those of wild type Ler.,Normal germination compared to wild-type plants in response to varying red light fluences.,No bolting.,No increase of germination or restoration of male fertility compared to the single ga1-3 mutant.,Rescue of the nonflowering phenotype of ga1-3.,The double mutant germinated much better in response to increasing red light fluences. At 0 μmol.m-2 red light fluence the double mutant germinated ~15% whereas the wildtype and single mutant seeds did not germinate under this light condition. At 5 μmol.m-2 the double mutant germinated ~60% whereas the wild type and the two single mutants germinated only ~5%. At a higher red light fluence (65 μmol.m-2) all seeds germinated ~100%.,Much reduced fertility compared to wild type Ler.,Reduced pollen levels than wild type Ler and filaments shorter than carpels.,Stems are 35% taller than that of wild type Ler.,Early flowering.,Longer carpels than those of the ga1-3 single mutant.,Stems are 32% taller than that of wild type Ler.,Partial suppression of the gid1a-1 gid1b-1 gid1c-1 triple mutant phenotype.,Does not produce seeds.,Extreme dwarf phenotype.,Unresponsive to GA treatment in leaf expansion or stem growth.,Produces seeds.,Semi-dwarf phenotype.,Partially restored stem height (59% of Ler wild type).,Partial rescue of the sly1-10 dwarf phenotype but no significant suppression of the germination or fertility defects.,Partial suppression of the dwarf phenotype. Resistant to paclobutrazol (inhibitor of GA synthesis)-N. Harberd-1997,Slightly pale green-T. Sun-1998 FUNCTION: Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11487693, ECO:0000269|PubMed:11606551, ECO:0000269|PubMed:11606552, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591, ECO:0000269|PubMed:17933900, ECO:0000269|PubMed:9389651}.,FUNCTION: Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression in seeds. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Compared to other DELLA proteins, it is the most sensitive to GA application. No effect of the BOI proteins on its stability. Its activity is probably regulated by other phytohormones such as auxin and ethylene, attenuation of auxin transport delaying its GA-induced degradation. {ECO:0000269|PubMed:11606551, ECO:0000269|PubMed:11606552, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591, ECO:0000269|PubMed:17933900, ECO:0000269|PubMed:20093430, ECO:0000269|PubMed:9490740}. 58927,64035 DELLA protein GAI (GRAS family protein 3) (AtGRAS-3) (Gibberellic acid-insensitive mutant protein) (Restoration of growth on ammonia protein 2),DELLA protein RGA (GAI-related sequence) (GRAS family protein 10) (AtGRAS-10) (Repressor on the ga1-3 mutant) (Restoration of growth on ammonia protein 1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; gibberellic acid mediated signaling pathway [GO:0009740]; meiotic cytokinesis [GO:0033206]; multicellular organism development [GO:0007275]; negative regulation of developmental vegetative growth [GO:1905614]; negative regulation of gene expression [GO:0010629]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; negative regulation of leaf development [GO:1905622]; negative regulation of trichome patterning [GO:1900033]; phloem transport [GO:0010233]; positive regulation of gene expression [GO:0010628]; regulation of nitrogen utilization [GO:0006808]; response to far red light [GO:0010218]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; transcription regulatory region DNA binding [GO:0044212]; gibberellic acid mediated signaling pathway [GO:0009740]; meiotic cytokinesis [GO:0033206]; multicellular organism development [GO:0007275]; negative regulation of developmental vegetative growth [GO:1905614]; negative regulation of gibberellic acid mediated signaling pathway [GO:0009938]; negative regulation of leaf development [GO:1905622]; negative regulation of trichome patterning [GO:1900033]; positive regulation of gene expression [GO:0010628]; regulation of protein catabolic process [GO:0042176]; regulation of transcription, DNA-templated [GO:0006355]; response to far red light [GO:0010218]; response to gibberellin [GO:0009739]; salicylic acid mediated signaling pathway [GO:0009863]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed. Expressed in rosette leaves, roots, stems and inflorescences of greenhouse grown. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:9237632, ECO:0000269|PubMed:9490740}.,TISSUE SPECIFICITY: Ubiquitously expressed. Expressed in roots, rosette leaves, bolting and mature stems, young and mature siliques, flower buds and influorescences. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:20093430, ECO:0000269|PubMed:9237632, ECO:0000269|PubMed:9490740}. locus:2006747;,locus:2005516; AT1G14920,AT2G01570 DELLA protein DELLA protein SLR1 (Gibberellic acid-insensitive mutant protein) (OsGAI) (Protein SLENDER RICE1),Os01g0646300 protein (cDNA, clone: J080076J05, full insert sequence) Q7G7J6,B7F9I5 SLR1_ORYSJ,B7F9I5_ORYSJ SLR1 GAI Os03g0707600 LOC_Os03g49990 OsJ_12286 OSJNBb0022E02.5,Os01g0646300 OsJ_02811 OSNPB_010646300 FUNCTION: Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000269|PubMed:10713441, ECO:0000269|PubMed:11826299, ECO:0000269|PubMed:20400938}. ENOG411DRUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0230300 protein (Fragment) A0A0P0VGQ0 A0A0P0VGQ0_ORYSJ Os02g0230300 OSNPB_020230300 ENOG411DRUJ F4JRW3,Q9ZQ31,Q9M085 F4JRW3_ARATH,Q9ZQ31_ARATH,Q9M085_ARATH Protein kinase superfamily protein,Protein kinase superfamily protein (Uncharacterized protein At2g24360),AT4G31170 protein (AT4g31170/F6E21_90) (Protein kinase superfamily protein) (Protein kinase-like protein) FUNCTION: Serine/threonine protein kinase that phosphorylates proteins on serine, threonine and tyrosine residues. {ECO:0000269|PubMed:16429265}. 34253,46002,46084 Protein kinase superfamily protein,Protein kinase superfamily protein (Uncharacterized protein At2g24360),AT4G31170 protein (AT4g31170/F6E21_90) (Protein kinase superfamily protein) (Protein kinase-like protein) ATP binding [GO:0005524]; protein kinase activity [GO:0004672],intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein tyrosine kinase activity [GO:0004713]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; root epidermal cell differentiation [GO:0010053] locus:2061092;,locus:2126311; AT4G31170,AT2G24360 serine threonine-protein kinase Os06g0663400 protein (Serine/threonine protein kinase) (cDNA clone:001-124-G06, full insert sequence) (cDNA clone:J023087I11, full insert sequence),Os08g0224100 protein (Putative serine/threonine protein kinase) (Serine/threonine protein kinase),Os02g0174200 protein (Serine/threonine protein kinase) (cDNA clone:J033034G09, full insert sequence),OSJNBa0060N03.16 protein (Os04g0608900 protein) (Serine/threonine protein kinase) (cDNA clone:J023004I16, full insert sequence),Os08g0224100 protein (Fragment) Q653Z6,Q8GV30,Q8GV28,Q8GV29,A0A0P0XDB8 Q653Z6_ORYSJ,Q8GV30_ORYSJ,Q8GV28_ORYSJ,Q8GV29_ORYSJ,A0A0P0XDB8_ORYSJ Os06g0663400 OsJ_22266 OSJNBb0065C04.41 OSNPB_060663400,DPK1 OJ1006_H01.120 Os08g0224100 OsJ_26459 OSNPB_080224100,DPK3 Os02g0174200 OSJNBa0073A21.22 OSNPB_020174200,DPK2 Os04g0608900 OsJ_16100 OSJNBa0060N03.16 OSNPB_040608900,Os08g0224100 OSNPB_080224100 ENOG411EAT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sigma-54 interaction domain NA NA NA NA NA NA NA ENOG411E2FR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411DXGQ Q8L601,A0A1P8B8U2,F4JJ52 Q8L601_ARATH,A0A1P8B8U2_ARATH,F4JJ52_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g22400),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 89812,63588,88183 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g22400),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168]; RNA binding [GO:0003723]; tRNA (cytosine-5-)-methyltransferase activity [GO:0016428]; RNA methylation [GO:0001510],RNA binding [GO:0003723]; tRNA (cytosine-5-)-methyltransferase activity [GO:0016428] locus:2041213;,locus:2140094; AT2G22400,AT4G40000 NOL1 NOP2 sun family protein Os08g0484400 protein (Proliferating-cell nucleolar antigen-like protein) (cDNA clone:J013035I17, full insert sequence),Os09g0471900 protein (Proliferating-cell nucleolar protein-like),Os09g0471900 protein (Fragment) Q6YTT4,Q6K4D4,A0A0P0XPB0 Q6YTT4_ORYSJ,Q6K4D4_ORYSJ,A0A0P0XPB0_ORYSJ Os08g0484400 Os08g0484400 OSNPB_080484400 P0419H09.14,Os09g0471900 OJ1509_C06.4 OsJ_29718 OSNPB_090471900,Os09g0471900 OSNPB_090471900 ENOG411E5WG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: stress enhanced protein 1 Expressed protein (Os11g0621400 protein) (cDNA clone:001-103-E04, full insert sequence) Q2R123 Q2R123_ORYSJ Os11g0621400 LOC_Os11g40600 OsJ_34676 OSNPB_110621400 ENOG411E5WE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411DURI Q8H0V1 CK5P1_ARATH CDK5RAP1-like protein FUNCTION: Potential regulator of CDK5 activity. {ECO:0000250}. ARA:GQT-737-MONOMER; 71721 CDK5RAP1-like protein cytoplasm [GO:0005737]; 4 iron, 4 sulfur cluster binding [GO:0051539]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]; tRNA modification [GO:0006400] locus:2115410; AT4G36390 CDK5RAP1-like CDK5RAP1-like protein Q2R1U4 CK5P1_ORYSJ Os11g0592800 LOC_Os11g38030 OsJ_34478 OSJNBa0074L11 FUNCTION: Potential regulator of CDK5 activity. {ECO:0000250}. ENOG411DURU Q9XIR1 FBK27_ARATH F-box/kelch-repeat protein At1g64840 43683 F-box/kelch-repeat protein At1g64840 chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; base-excision repair [GO:0006284]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724] locus:2010806; AT1G64840 Protein of unknown function (DUF295) F-box domain containing protein, expressed (Os03g0708200 protein),Os01g0599300 protein Q10E48,A0A0P0V4V1 Q10E48_ORYSJ,A0A0P0V4V1_ORYSJ Os03g0708200 LOC_Os03g50050 Os03g0708200 OSJNBb0022E02.9 OSNPB_030708200,Os01g0599300 OSNPB_010599300 ENOG411DURT EMB2769 Q9LK52 Q9LK52_ARATH Cwf15 / Cwc15 cell cycle control family protein Embryo defective; Globular-D. Meinke-2007 R-ATH-72163; 27033 Cwf15 / Cwc15 cell cycle control family protein spliceosomal complex [GO:0005681]; mRNA splicing, via spliceosome [GO:0000398] locus:2089989; AT3G13200 Protein CWC15 homolog Os06g0106100 protein,Os06g0106100 protein (Fragment) Q9LWY5,A0A0P0WQZ6 Q9LWY5_ORYSJ,A0A0P0WQZ6_ORYSJ Os06g0106100 Os06g0106100 OsJ_19834 OSNPB_060106100 P0644B06.33,Os06g0106100 OSNPB_060106100 ENOG411DURZ mMDH2 Q9ZP06,Q9LKA3,A8MQK3 MDHM1_ARATH,MDHM2_ARATH,A8MQK3_ARATH Malate dehydrogenase 1, mitochondrial (EC 1.1.1.37) (Mitochondrial MDH1) (mMDH1) (Mitochondrial NAD-dependent malate dehydrogenase 1) (mNAD-MDH 1) (mtNAD-MDH1),Malate dehydrogenase 2, mitochondrial (EC 1.1.1.37) (Mitochondrial MDH2) (mMDH1) (Mitochondrial NAD-dependent malate dehydrogenase 2) (mNAD-MDH 2) (mtNAD-MDH2),Malate dehydrogenase (EC 1.1.1.37) DISRUPTION PHENOTYPE: Slight reduction of rosette leaf size and reduction by 50 percents in fresh weight and seed production (PubMed:26889011). The double mutant plants mmdh1 and mmdh2 have decreased germination rate, grow slowly, are small, have increased photorespiration and die before producing seeds (PubMed:20876337). {ECO:0000269|PubMed:20876337, ECO:0000269|PubMed:26889011}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants mmdh1 and mmdh2 have decreased germination rate, grow slowly, are small, have increased photorespiration and die before producing seeds. {ECO:0000269|PubMed:20876337, ECO:0000269|PubMed:27208265}. mmdh1-2 mmdh2-1 double mutants have no detectable mitochondrial malate dehydrogenase (MDH) activity and over a 40% reduction in total leaf MDH activity. They also have growth defects under long and short days. FUNCTION: Catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments (Probable). Required for carbon dioxide and energy partitioning in leaves. May limit photorespiration during the dark phase (PubMed:20876337, PubMed:27208265). Its activity is essential to shuttle reductants out from the mitochondria to support the photorespiratory flux (PubMed:26889011). Can convert 2-oxoglutarate to (S)-2-hydroxyglutarate in vitro (PubMed:26203119). {ECO:0000269|PubMed:20876337, ECO:0000269|PubMed:26203119, ECO:0000269|PubMed:26889011, ECO:0000269|PubMed:27208265, ECO:0000305|PubMed:20876337}.,FUNCTION: Catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments (Probable). Required for carbon dioxide and energy partitioning in leaves. May limit photorespiration during the dark phase (PubMed:20876337, PubMed:27208265). Can convert 2-ketoglutarate to L-2-hydroxyglutarate in vitro (PubMed:26203119). {ECO:0000269|PubMed:20876337, ECO:0000269|PubMed:26203119, ECO:0000269|PubMed:27208265, ECO:0000305|PubMed:20876337}. ARA:AT1G53240-MONOMER;MetaCyc:AT1G53240-MONOMER; R-ATH-70263;R-ATH-71403; 1.1.1.37; 1.1.1.37 35804,35875,33133 Malate dehydrogenase 1, mitochondrial (EC 1.1.1.37) (Mitochondrial MDH1) (mMDH1) (Mitochondrial NAD-dependent malate dehydrogenase 1) (mNAD-MDH 1) (mtNAD-MDH1),Malate dehydrogenase 2, mitochondrial (EC 1.1.1.37) (Mitochondrial MDH2) (mMDH1) (Mitochondrial NAD-dependent malate dehydrogenase 2) (mNAD-MDH 2) (mtNAD-MDH2),Malate dehydrogenase (EC 1.1.1.37) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; defense response to bacterium [GO:0042742]; malate metabolic process [GO:0006108]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; tricarboxylic acid cycle [GO:0006099],apoplast [GO:0048046]; membrane [GO:0016020]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; defense response to bacterium [GO:0042742]; malate metabolic process [GO:0006108]; tricarboxylic acid cycle [GO:0006099],L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Expressed in rosette leaves. {ECO:0000269|PubMed:20876337}.,TISSUE SPECIFICITY: Expressed in rosette leaves at low levels. {ECO:0000269|PubMed:20876337}. locus:2009605;,locus:2086340; AT1G53240,AT3G15020 Malate dehydrogenase Malate dehydrogenase (EC 1.1.1.37) Q94JA2,Q6F361 Q94JA2_ORYSJ,Q6F361_ORYSJ P0047B08.9 Os01g0649100 OJ1316_H05.27 OsJ_02822 OSNPB_010649100,Os05g0574400 Os05g0574400 OJ1268_B08.7 OJ1735_C10.25 OsJ_19634 OSNPB_050574400 ENOG411EEHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411E7J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411E7J0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7J6 Q9FYH5,A0A1P8ANI7 Q9FYH5_ARATH,A0A1P8ANI7_ARATH At1g30880 (F17F8.25) (Uncharacterized protein At1g30880),Uncharacterized protein 13402,9311 At1g30880 (F17F8.25) (Uncharacterized protein At1g30880),Uncharacterized protein locus:2015706; AT1G30880 NA NA NA NA NA NA NA NA ENOG411E7JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWP-RK transcription factor NA NA NA NA NA NA NA ENOG411E7JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC Os11g0296500 protein (Retrotransposon protein, putative, unclassified, expressed) (cDNA clone:J023024O16, full insert sequence) Q2R6R8 Q2R6R8_ORYSJ LOC_Os11g19100 Os11g0296500 OSNPB_110296500 ENOG411E7JR SPH5,SPH29 O23020,P0DN93 SPH5_ARATH,SPH29_ARATH S-protein homolog 5,S-protein homolog 29 14903,15785 S-protein homolog 5,S-protein homolog 29 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:505006099; AT1G04645,AT5G37035 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411E7JS MCK7.21,TRF-like 5 Q5XUY3,Q9LMR2 Q5XUY3_ARATH,Q9LMR2_ARATH Myb-like HTH transcriptional regulator family protein,At1g15720 (F7H2.6 protein) (MYB transcription factor) (TRF-like 5) (Uncharacterized protein At1g15720) 50424,44970 Myb-like HTH transcriptional regulator family protein,At1g15720 (F7H2.6 protein) (MYB transcription factor) (TRF-like 5) (Uncharacterized protein At1g15720) nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; telomeric loop formation [GO:0031627] locus:2161233;,locus:2036174; AT5G58340,AT1G15720 Inherit from NOG: Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E7JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0284800 protein,OSJNBa0019J05.13 protein (Os04g0283800 protein) (cDNA clone:002-149-A08, full insert sequence) B9FE89,Q7XW81 B9FE89_ORYSJ,Q7XW81_ORYSJ Os04g0284800 OsJ_14131 OSNPB_040284800,Os04g0283800 OSJNBa0019J05.13 OSNPB_040283800 ENOG411E7JQ MXA21.18,MXA21.17 Q9C9N7,Q9FF40,Q9FF39 Q9C9N7_ARATH,Q9FF40_ARATH,Q9FF39_ARATH At1g66850 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Lipid transfer protein, putative) (Uncharacterized protein At1g66850/F4N21_4),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Emb|CAB68137.1) (Lipid transfer like protein) (Putative lipid transfer protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein) 10513,10887,10936 At1g66850 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Lipid transfer protein, putative) (Uncharacterized protein At1g66850/F4N21_4),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Emb|CAB68137.1) (Lipid transfer like protein) (Putative lipid transfer protein),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative lipid transfer protein) lipid transport [GO:0006869] locus:2033339;,locus:2176702;,locus:2176712; AT1G66850,AT5G38160,AT5G38170 lipid-transfer protein Non-specific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein),Nonspecific lipid-transfer protein 2, putative, expressed (Os10g0505700 protein) (Protease inhibitor/seed storage/LTP family, putative) (cDNA clone:001-112-C03, full insert sequence),Nonspecific lipid-transfer protein 2, putative, expressed (Os10g0504900 protein),Nonspecific lipid-transfer protein, putative, expressed (Os10g0505500 protein) (Protease inhibitor/seed storage/LTP family, putative) (cDNA clone:001-104-E01, full insert sequence),Nonspecific lipid-transfer protein 2, putative (Os10g0504650 protein) (Protease inhibitor/seed storage/LTP family, putative),Nonspecific lipid-transfer protein 2G, putative, expressed (Os10g0505000 protein) (Protease inhibitor/seed storage/LTP family, putative),Nonspecific lipid-transfer protein 2, putative (Os10g0504700 protein) (Protease inhibitor/seed storage/LTP family, putative) Q10ST8,Q7G2B5,Q337E3,Q7G2B6,Q7G2C5,Q7G2C1,Q7G2C3 NLTPX_ORYSJ,Q7G2B5_ORYSJ,Q337E3_ORYSJ,Q7G2B6_ORYSJ,Q7G2C5_ORYSJ,Q7G2C1_ORYSJ,Q7G2C3_ORYSJ LTP-2 Os03g0111300 LOC_Os03g02050 OsJ_008807,Os10g0505700 LOC_Os10g36170 Os10g0505700 OSNPB_100505700,LOC_Os10g36100 Os10g0504900 OSNPB_100504900,LOC_Os10g36160 Os10g0505500 OsJ_32090 OSNPB_100505500,Os10g0504650 LOC_Os10g36070 OsJ_32087 OSNPB_100504650,Os10g0505000 LOC_Os10g36110 Os10g0505000 OsJ_32089 OSNPB_100505000,Os10g0504700 LOC_Os10g36090 OSNPB_100504700 FUNCTION: Transfer lipids across membranes. May play a role in plant defense or in the biosynthesis of cuticle layers. ENOG411E7JV Q9LK55 Q9LK55_ARATH At3g13171 (Transmembrane protein) 11702 At3g13171 (Transmembrane protein) integral component of membrane [GO:0016021] locus:505006339; AT3G13175 NA NA NA NA NA NA NA NA ENOG411E7JW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF740) Os02g0100800 protein (Fragment) A0A0P0VDI5 A0A0P0VDI5_ORYSJ Os02g0100800 OSNPB_020100800 ENOG411E7JT Q9C7N7 Q9C7N7_ARATH At1g29640 (Uncharacterized protein At1g29640) (Uncharacterized protein F15D2.20) 16038 At1g29640 (Uncharacterized protein At1g29640) (Uncharacterized protein F15D2.20) locus:2013638; AT1G29640 Pfam:DUF584 Os05g0518800 protein Q0DGQ0 Q0DGQ0_ORYSJ Os05g0518800 Os05g0518800 OsJ_19224 OSNPB_050518800 ENOG411E7JU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) Os09g0337500 protein,Os03g0559900 protein (Fragment),Os03g0559900 protein,Os12g0282400 protein (Fragment) C7J6H2,A0A0P0VZB4,A0A0P0VZ93,A0A0P0Y941 C7J6H2_ORYSJ,A0A0P0VZB4_ORYSJ,A0A0P0VZ93_ORYSJ,A0A0P0Y941_ORYSJ Os09g0337500 OSNPB_090337500,Os03g0559900 OSNPB_030559900,Os12g0282400 OSNPB_120282400 ENOG411E7JH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM domain AM15 (Os01g0782901 protein),Os01g0783000 protein (Fragment) D0UTL7,A0A0P0V8Z1 D0UTL7_ORYSJ,A0A0P0V8Z1_ORYSJ Os01g0782901 OSNPB_010782901,Os01g0783000 OSNPB_010783000 ENOG411E7JN SP1L5 Q8LGD1 SP1L5_ARATH Protein SPIRAL1-like 5 FUNCTION: Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth. {ECO:0000250}. 10371 Protein SPIRAL1-like 5 microtubule [GO:0005874] TISSUE SPECIFICITY: Expressed exclusively in stems and flowers. {ECO:0000269|PubMed:16478750}. locus:505006517; AT4G23496 NA NA NA NA NA NA NA NA ENOG411E7JB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0405200 protein (Os09g0405300 protein) (Os09g0405500 protein) (Os09g0405600 protein) (Os09g0406000 protein) (Os09g0406100 protein) (Os09g0406400 protein) (Os09g0406500 protein),Os04g0183900 protein,Os09g0405900 protein,Os01g0235500 protein (cDNA clone:J023132B02, full insert sequence),Os09g0405400 protein,Os09g0404300 protein (Os09g0404400 protein) (Os09g0404500 protein) (Os09g0404600 protein) (Os09g0404700 protein) (Os09g0404800 protein) (Os09g0404900 protein) (Os09g0405001 protein) (Os09g0406300 protein),Os09g0406200 protein,Os04g0184000 protein Q69MZ5,A3ARG7,Q69MZ0,Q9LI33,Q69ME6,Q69N09,Q69MY7,A0A0P0W723 Q69MZ5_ORYSJ,A3ARG7_ORYSJ,Q69MZ0_ORYSJ,Q9LI33_ORYSJ,Q69ME6_ORYSJ,Q69N09_ORYSJ,Q69MY7_ORYSJ,A0A0P0W723_ORYSJ Os09g0406500 Os09g0405200 Os09g0405500 Os09g0406400 Os09g0405300 Os09g0405600 Os09g0406000 Os09g0406100 OJ1261_A08.26 OJ1261_A08.27 OJ1261_A08.29 OJ1261_A08.30 OJ1261_A08.37 OJ1261_A08.38 OJ1261_A08.42 OJ1261_A08.43 OSJNBa0084L05.36 OSJNBa0084L05.37 OSJNBa0084L05.39 OSJNBa0084L05.40 OSNPB_090405200 OSNPB_090405300 OSNPB_090405500 OSNPB_090405600 OSNPB_090406000 OSNPB_090406100 OSNPB_090406400 OSNPB_090406500,Os04g0183900 OsJ_13960 OSNPB_040183900,OJ1261_A08.36 Os09g0405900 OSNPB_090405900,Os01g0235500 Os01g0235500 OsJ_01026 OSNPB_010235500 P0708G02.10,Os09g0405400 OJ1261_A08.28 OSJNBa0084L05.38 OSNPB_090405400,Os09g0405001 Os09g0404300 Os09g0404400 Os09g0404600 Os09g0404700 Os09g0404800 Os09g0406300 Os09g0404500 Os09g0404900 OJ1261_A08.12 OJ1261_A08.13 OJ1261_A08.14 OJ1261_A08.15 OJ1261_A08.16 OJ1261_A08.41 OJ1261_A08.7 OJ1261_A08.8 OSJNBa0084L05.17 OSJNBa0084L05.18 OSJNBa0084L05.22 OSJNBa0084L05.23 OSJNBa0084L05.24 OSJNBa0084L05.25 OSJNBa0084L05.26 OSNPB_090404300 OSNPB_090404400 OSNPB_090404500 OSNPB_090404600 OSNPB_090404700 OSNPB_090404800 OSNPB_090405001 OSNPB_090406300,Os09g0406200 OJ1261_A08.39 OSNPB_090406200,Os04g0184000 OSNPB_040184000 ENOG411E7JC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7JA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein Os10g0181200 protein (Fragment) A0A0N7KRI6 A0A0N7KRI6_ORYSJ Os10g0181200 OSNPB_100181200 ENOG411E7JF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411E7JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWWP domain NA NA NA NA NA NA NA ENOG411E6Z6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CutC family NA NA NA NA NA NA NA ENOG411E6Z5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: glycine-rich protein Os02g0743600 protein A0A0P0VPE1 A0A0P0VPE1_ORYSJ Os02g0743600 OSNPB_020743600 ENOG411E6Z4 LEA46 Q9FG31 LEA46_ARATH Late embryogenesis abundant protein 46 (Late embryogenesis abundant protein 4-5) (AtLEA4-5) Sensitive to drought; Germination sensitive to osmotic stress-A. Covarrubias-2010 FUNCTION: Involved dehydration tolerance. Involved in the adaptive response of vascular plants to withstand water deficit (PubMed:20668063). May possess chaperone-like activity under water deficit (PubMed:27006402). {ECO:0000269|PubMed:20668063, ECO:0000269|PubMed:27006402}. MISCELLANEOUS: Over-expression of LEA46 confers plant tolerance to severe drought (PubMed:20668063). Under water deficit, the N-terminal region is necessary and sufficient for conformational transition from disordered to alpha-helix folding. This conformational transition is required for chaperone-like activity under water limitation (PubMed:27006402). {ECO:0000269|PubMed:20668063, ECO:0000269|PubMed:27006402}. 16179 Late embryogenesis abundant protein 46 (Late embryogenesis abundant protein 4-5) (AtLEA4-5) cytosol [GO:0005829]; embryo development ending in seed dormancy [GO:0009793]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414]; seed development [GO:0048316] DEVELOPMENTAL STAGE: Expressed during embryo development and in dry seed. Expression decreases significantly after seed germination. {ECO:0000269|PubMed:20668063}. locus:2170239; AT5G06760 late embryogenesis abundant group 1 domain-containing protein LEA group 1 domain-containing protein NA NA NA NA NA NA NA ENOG411E6ZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os09g0541100 protein Q7XJ22 Q7XJ22_ORYSJ Os09g0541100 Os09g0541100 B1274F11.30 OSNPB_090541100 P0478E02.4 ENOG411E6ZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411E6ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Chemocyanin, putative, expressed (Os03g0259100 protein) Q10NT8 Q10NT8_ORYSJ LOC_Os03g15340 Os03g0259100 OsJ_02816 OSNPB_030259100 ENOG411E6ZB T8P19.170,MLE2.13 Q9SMN3,Q9FMV2 Q9SMN3_ARATH,Q9FMV2_ARATH Transmembrane protein, putative (DUF 3339) (Uncharacterized protein T8P19.170),At5g63500 (Emb|CAB62355.1) (GPI-anchored protein) (Transmembrane protein, putative (DUF 3339)) 9885,7328 Transmembrane protein, putative (DUF 3339) (Uncharacterized protein T8P19.170),At5g63500 (Emb|CAB62355.1) (GPI-anchored protein) (Transmembrane protein, putative (DUF 3339)) integral component of membrane [GO:0016021],anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2114550;,locus:2167341; AT3G48660,AT5G63500 Protein of unknown function (DUF3339) Os02g0508100 protein (cDNA clone:001-123-D03, full insert sequence) (cDNA clone:J033092F10, full insert sequence) Q6K2G6 Q6K2G6_ORYSJ Os02g0508100 OsJ_06862 OSJNBa0052M16.13 OSNPB_020508100 P0047E05.40 ENOG411E6ZA F7M19_120 Q9M250,F4K5N0,F4K5M9 Q9M250_ARATH,F4K5N0_ARATH,F4K5M9_ARATH At3g43110 (Transmembrane protein) (Uncharacterized protein F7M19_120),Transmembrane protein 21741,20972,14937 At3g43110 (Transmembrane protein) (Uncharacterized protein F7M19_120),Transmembrane protein integral component of membrane [GO:0016021] locus:2084841;,locus:2180419; AT3G43110,AT5G20790 NA NA NA NA NA NA NA NA ENOG411E6ZN Q7X887,A0A1P8B1K3 Q7X887_ARATH,A0A1P8B1K3_ARATH Glycosyltransferase (Homeodomain-like superfamily protein) (Uncharacterized protein At2g02060),Homeodomain-like superfamily protein 28613,21696 Glycosyltransferase (Homeodomain-like superfamily protein) (Uncharacterized protein At2g02060),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transferase activity [GO:0016740]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2041145; AT2G02060 Transcription factor NA NA NA NA NA NA NA ENOG411E6ZM Q9LUM8 Q9LUM8_ARATH Blue copper-binding protein-like (Cupredoxin superfamily protein) 14460 Blue copper-binding protein-like (Cupredoxin superfamily protein) electron carrier activity [GO:0009055] locus:4010713753; AT3G17675 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E6ZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA double-stranded RNA-binding protein 4-like Double-stranded RNA-binding protein 4 (dsRNA-binding protein 4),Os09g0331900 protein Q6YW64,A0A0P0XM33 DRB4_ORYSJ,A0A0P0XM33_ORYSJ DRB4 Os08g0384100 LOC_Os08g29530 B1090H08.31,Os09g0331900 OSNPB_090331900 FUNCTION: Binds double-stranded RNA. {ECO:0000250}. ENOG411EHB0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Maf-like protein Os03g0229600 protein A0A0P0VV04 A0A0P0VV04_ORYSJ Os03g0229600 OSNPB_030229600 ENOG411EAI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling (By similarity) NA NA NA NA NA NA NA ENOG411EHB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Extensin-like protein (Os07g0105300 protein) Q7XAL2 Q7XAL2_ORYSJ P0617C02.112-1 B1317D11.108 P0446F04.139 Os07g0105300 OsJ_22795 OSNPB_070105300 ENOG411EHBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0714700 protein Q6ZFT3 Q6ZFT3_ORYSJ Os02g0714700 OJ1191_G08.4 OJ1479_B12.28 OSNPB_020714700 ENOG411EHBV IDL4 Q6DUW6 IDL4_ARATH Protein IDA-LIKE 4 FUNCTION: May be involved in floral abscission. {ECO:0000269|PubMed:18660431}. MISCELLANEOUS: IDL4 is only partially redundant with IDA. 10899 Protein IDA-LIKE 4 extracellular space [GO:0005615]; floral organ abscission [GO:0010227] TISSUE SPECIFICITY: Expressed in mainly in buds. Lower levels in roots. Detected at the base of pedicel, in the floral and funicule abscission zones, in vascular tissues, in guard cells of young seedlings and in hydathodes. {ECO:0000269|PubMed:12972671, ECO:0000269|PubMed:18660431}. locus:4010713757; AT3G18715 (inflorescence deficient in abscission (ida)-like 4) NA NA NA NA NA NA NA ENOG411EHBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calponin homology (CH) domain NA NA NA NA NA NA NA ENOG411DYRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EHBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EHBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EATF T20K12.200 Q9M2D4 Q9M2D4_ARATH Anthranilate phosphoribosyltransferase-like protein (C2 calcium/lipid-binding plant phosphoribosyltransferase family protein) (Putative anthranilate phosphoribosyltransferase) 110778 Anthranilate phosphoribosyltransferase-like protein (C2 calcium/lipid-binding plant phosphoribosyltransferase family protein) (Putative anthranilate phosphoribosyltransferase) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2098846; AT3G61300 domain--containing protein NA NA NA NA NA NA NA ENOG411EHBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMJF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EMJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EMJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411EAPN Q9FYL9,A0A1P8ATM4 Q9FYL9_ARATH,A0A1P8ATM4_ARATH F21J9.10 (RING/U-box superfamily protein) (Uncharacterized protein At1g24440),RING/U-box superfamily protein 29487,25864 F21J9.10 (RING/U-box superfamily protein) (Uncharacterized protein At1g24440),RING/U-box superfamily protein integral component of membrane [GO:0016021] locus:2024026; AT1G24440 RING NA NA NA NA NA NA NA ENOG411EAPM A0A1P8B659,F4JUA4,F4JUA3,F4JUA6 A0A1P8B659_ARATH,F4JUA4_ARATH,F4JUA3_ARATH,F4JUA6_ARATH Pectin lyase superfamily protein,Pectin lyase-like superfamily protein 44710,46359,38134,49266 Pectin lyase superfamily protein,Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:504955462;,locus:2127821;,locus:2127836; AT4G32375,AT4G32370,AT4G32380 Glycoside hydrolase family 28 protein polygalacturonase (Pectinase) family protein NA NA NA NA NA NA NA ENOG411DYRG TCTP2,TCTP1 Q9M9V9,P31265 TCTP2_ARATH,TCTP1_ARATH Translationally controlled tumor protein 2 (AtTCTP2),Translationally-controlled tumor protein 1 (TCTP1) DISRUPTION PHENOTYPE: Seedling lethality at the early rosette stage when homozygous. {ECO:0000269|PubMed:26191065}.,DISRUPTION PHENOTYPE: Male gametophytic phenotype with normal pollen formation and germination but impaired pollen tube growth (PubMed:19060111). Embryonic lethality when homozygous due to a retarded development of the embryos that eventually collapse at the silique dehiscence stage (PubMed:20736351). {ECO:0000269|PubMed:19060111, ECO:0000269|PubMed:20736351}. Segregates 1:1 wild type heterozygotes doe to defects in pollen tube development. Tubes are short and rarely find the ovule. Male gametophyte defective; Embryo defective (inferred)-J. Masle-2008 FUNCTION: Regulates proliferation. Induces whole plant regeneration when expressed in heterologous systems (PubMed:26191065, PubMed:26237533). Involved in root growth and lateral root development, with a probable role in cell reprogramming (PubMed:25566280). The long-distance transport of TCTP RNA and/or protein in plants may have an important role in regulation of growth and development (Probable). {ECO:0000269|PubMed:25566280, ECO:0000269|PubMed:26191065, ECO:0000269|PubMed:26237533, ECO:0000305|PubMed:26237533}.,FUNCTION: General regulator required for the development of the entire plant. Regulates the duration of cell cycle (PubMed:20736351). Probable activator of Rab GTPases and upstream regulator of the cell growth-regulating TOR (target of rapamycin) network (PubMed:19060111, PubMed:20736351). Might also control spatial growth in pollen tubes or root hairs via the TORC2 signaling branch (PubMed:19060111). Involved in the regulation of abscisic acid- and calcium-mediated stomatal closure, but not in light or H(+)-pumping induced stomatal opening. May regulate microtubules depolymerization (PubMed:22610367). Binds calcium and has a cytoprotective function (PubMed:24040826). {ECO:0000269|PubMed:19060111, ECO:0000269|PubMed:20736351, ECO:0000269|PubMed:22610367, ECO:0000269|PubMed:24040826}. MISCELLANEOUS: In a heterologous system, TCTP2 mRNA and protein are capable of moving long distance in both directions with a tendency for movment from source to sink tissue (PubMed:25566280, PubMed:26237533). In heterografts, the long-distance transport of TCTP2 is necessary but not sufficient to induce emergence of adventitious aerial roots in close proximity to the graft (PubMed:26237533). {ECO:0000269|PubMed:25566280, ECO:0000269|PubMed:26237533}.,MISCELLANEOUS: Knockdown mutants have retarded growth due to decreased cell size. {ECO:0000269|PubMed:19060111}. 18016,18910 Translationally controlled tumor protein 2 (AtTCTP2),Translationally-controlled tumor protein 1 (TCTP1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; developmental process [GO:0032502]; regulation of cell proliferation [GO:0042127],apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; pollen tube [GO:0090406]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; calcium ion binding [GO:0005509]; microtubule binding [GO:0008017]; protein domain specific binding [GO:0019904]; auxin homeostasis [GO:0010252]; cell proliferation [GO:0008283]; defense response to bacterium [GO:0042742]; drought recovery [GO:0009819]; embryo development ending in seed dormancy [GO:0009793]; lateral root development [GO:0048527]; pollen tube growth [GO:0009860]; positive regulation of microtubule depolymerization [GO:0031117]; post-embryonic development [GO:0009791]; regulation of cell growth [GO:0001558]; regulation of mitotic cell cycle [GO:0007346]; regulation of multicellular organism growth [GO:0040014]; regulation of stomatal closure [GO:0090333]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; root development [GO:0048364]; root hair cell tip growth [GO:0048768] TISSUE SPECIFICITY: Expressed in stems, cauline leaves, minor veins of rosette leaves, roots, lateral root primordia, vascular tissues of petioles and inflorescences, base of siliques, papillae and ovules. Not detected in root meristems, anthers or seeds (PubMed:26191065). Expressed in stomata, trichomes and root cortex (PubMed:26191065, PubMed:26237533). {ECO:0000269|PubMed:26191065, ECO:0000269|PubMed:26237533}.,TISSUE SPECIFICITY: Expressed in flowers, leaves and stems (PubMed:16902407, PubMed:19060111). Expressed in roots and siliques. Detected in seeds. Highest expression in actively dividing and differentiating cell types, such as the meristematic and division zones of the root, the embryo or the elongating tube of germinating pollen (PubMed:19060111). Expressed in cotyledons, leaves, hypocotyls and roots. Detected in mitotically active tissues such as shoot apical meristems, root tips, lateral root initiation regions and anthers, and in guard cells (PubMed:22610367). {ECO:0000269|PubMed:16902407, ECO:0000269|PubMed:19060111, ECO:0000269|PubMed:22610367}. locus:2078052;,locus:2089378; AT3G05540,AT3G16640 translationally-controlled tumor protein homolog Translationally-controlled tumor protein homolog (TCTP) P35681 TCTP_ORYSJ TCTP Os11g0660500 LOC_Os11g43900 FUNCTION: Involved in calcium binding and microtubule stabilization. {ECO:0000250}. ENOG411DYRE AP1M1,AP1M2 Q9SAC9,O22715 AP1M1_ARATH,AP1M2_ARATH AP-1 complex subunit mu-1 (Adaptor protein complex AP-1 subunit mu-1) (Adaptor protein-1 mu-adaptin 1) (Adaptor-related protein complex 1 subunit mu-1) (At-muB1-Ad) (Clathrin assembly protein complex 1 mu-1 medium chain) (Mu1-adaptin 1),AP-1 complex subunit mu-2 (Adaptor protein complex AP-1 subunit mu-2) (Adaptor protein-1 mu-adaptin 2) (Adaptor-related protein complex 1 subunit mu-2) (At-muB2-Ad) (Clathrin assembly protein complex 1 mu-2 medium chain) (Mu1-adaptin 2) (Protein HAPLESS 13) DISRUPTION PHENOTYPE: Growth retardation phenotype. {ECO:0000269|PubMed:23733933}.,DISRUPTION PHENOTYPE: Short pollen tube growth and failure to exit the style (PubMed:15514068). Compromised cytokinesis due to the mislocalization of the KNOLLE syntaxin (PubMed:23543752, PubMed:23733933). Full spectrum of growth defects, suggestive of compromised auxin signaling and of defective RLK signaling. Cell morphogenesis was also disturbed (PubMed:23766365). Impaired pollen function and growth retardation phenotype (PubMed:23733933). {ECO:0000269|PubMed:15514068, ECO:0000269|PubMed:23543752, ECO:0000269|PubMed:23733933, ECO:0000269|PubMed:23766365}. FUNCTION: Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting at the trans-Golgi network and early endosomes (TGN/EE). The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Functions redundantly with AP1M2 in multiple post-Golgi trafficking pathways leading from the TGN to the vacuole, the plasma membrane, and the cell-division plane. {ECO:0000269|PubMed:23733933}.,FUNCTION: Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting at the trans-Golgi network and early endosomes (TGN/EE). The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Required for KNOLLE localization at the cell plate to mediate cytokinesis. Functions redundantly with AP1M1 in multiple post-Golgi trafficking pathways leading from the TGN to the vacuole, the plasma membrane, and the cell-division plane. {ECO:0000269|PubMed:23543752, ECO:0000269|PubMed:23733933, ECO:0000269|PubMed:23766365}. R-ATH-6798695; 49224,49032 AP-1 complex subunit mu-1 (Adaptor protein complex AP-1 subunit mu-1) (Adaptor protein-1 mu-adaptin 1) (Adaptor-related protein complex 1 subunit mu-1) (At-muB1-Ad) (Clathrin assembly protein complex 1 mu-1 medium chain) (Mu1-adaptin 1),AP-1 complex subunit mu-2 (Adaptor protein complex AP-1 subunit mu-2) (Adaptor protein-1 mu-adaptin 2) (Adaptor-related protein complex 1 subunit mu-2) (At-muB2-Ad) (Clathrin assembly protein complex 1 mu-2 medium chain) (Mu1-adaptin 2) (Protein HAPLESS 13) clathrin adaptor complex [GO:0030131]; clathrin-coated vesicle membrane [GO:0030665]; Golgi apparatus [GO:0005794]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; clathrin-coated vesicle membrane [GO:0030665]; cytosol [GO:0005829]; early endosome membrane [GO:0031901]; Golgi apparatus [GO:0005794]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:23543752, ECO:0000269|PubMed:23766365}. locus:2019913;,locus:2036606; AT1G10730,AT1G60780 AP-1 complex subunit Os01g0703600 protein,Os05g0543100 protein (Putative clathrin) (cDNA clone:J013002A10, full insert sequence),Clathrin-associated protein unc-101-like (Os01g0703600 protein) Q0JK13,Q65XN2,Q5N9S2 Q0JK13_ORYSJ,Q65XN2_ORYSJ,Q5N9S2_ORYSJ Os01g0703600 Os01g0703600 OsJ_03168 OSNPB_010703600,Os05g0543100 Os05g0543100 OJ1288_A07.7 OsJ_19408 OSNPB_050543100,P0421H07.27-1 Os01g0703600 P0684B02.2-1 OSNPB_010703600 ENOG411EAPZ AKT5 Q9SCX5 AKT5_ARATH Probable potassium channel AKT5 FUNCTION: Probable potassium channel. May interact with the cytoskeleton or with regulatory proteins (By similarity). {ECO:0000250}. 98504 Probable potassium channel AKT5 integral component of plasma membrane [GO:0005887]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391] TISSUE SPECIFICITY: Predominantly expressed in flowers. {ECO:0000269|PubMed:10852932}. locus:2127866; AT4G32500 Domain of unknown function (DUF3354) NA NA NA NA NA NA NA ENOG411EAPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) NA NA NA NA NA NA NA ENOG411EAPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0499400 protein (cDNA, clone: J065110A07, full insert sequence),Os12g0211000 protein (Fragment),Os09g0442000 protein,Os11g0108000 protein,Os08g0496650 protein,Os12g0211050 protein,Os12g0107800 protein Q6ZKM9,Q0IPE4,Q67UU8,A0A0P0XYA3,A0A0P0XHL8,A0A0P0Y815,A0A0P0Y623 Q6ZKM9_ORYSJ,Q0IPE4_ORYSJ,Q67UU8_ORYSJ,A0A0P0XYA3_ORYSJ,A0A0P0XHL8_ORYSJ,A0A0P0Y815_ORYSJ,A0A0P0Y623_ORYSJ Os08g0499400 Os08g0499400 OJ1118_A06.3 OsJ_27821 OSNPB_080499400,Os12g0211000 Os12g0211000 OSNPB_120211000,P0046G12.15 Os09g0442000 OSNPB_090442000,Os11g0108000 OSNPB_110108000,Os08g0496650 OSNPB_080496650,Os12g0211050 OSNPB_120211050,Os12g0107800 OSNPB_120107800 ENOG411EAPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411E7SG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EKTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os06g0589300 protein (Putative ABC family transporter) (cDNA clone:J013005O19, full insert sequence) Q69XA0 Q69XA0_ORYSJ Os06g0589300 Os06g0589300 OSNPB_060589300 P0633E08.4 ENOG411EKTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4F5 protein family NA NA NA NA NA NA NA ENOG411EKTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Protein IRON-RELATED TRANSCRIPTION FACTOR 2 (OsIRO2) (Basic helix-loop-helix protein 56) (OsbHLH056) Q0JFZ0 IRO2_ORYSJ IRO2 BHLH056 LOC_Os01g72370 Os01g0952800 OsJ_04787 P0431G06.13-1 DISRUPTION PHENOTYPE: Reduced growth compared after germination (PubMed:21331630). Lower mugineic acid family phytosiderophores (MAs) secretion and hypersensitivity to iron (Fe) deficiency (PubMed:17559517). Reduced induction of genes involved in iron homeostasis upon iron deficiency and ethylene treatment (PubMed:21112958). {ECO:0000269|PubMed:17559517, ECO:0000269|PubMed:21112958, ECO:0000269|PubMed:21331630}. FUNCTION: Transcription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination (PubMed:16887895, PubMed:17559517, PubMed:21331630, PubMed:26224556). Promotes the accumulation of mugineic acid family phytosiderophores (MAs) (PubMed:17559517). Required for ethylene-mediated signaling during iron deficiency responses (PubMed:21112958). Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain (PubMed:21331630). {ECO:0000269|PubMed:16887895, ECO:0000269|PubMed:17559517, ECO:0000269|PubMed:21112958, ECO:0000269|PubMed:21331630, ECO:0000269|PubMed:26224556}. ENOG411EKTD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os05g0597100 protein (cDNA clone:J023142J09, full insert sequence) Q0DFD6 Q0DFD6_ORYSJ Os05g0597100 Os05g0597100 OsJ_19788 OSNPB_050597100 ENOG411EMA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMA4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EKT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKT2 DHU1 Q8GYY7 Q8GYY7_ARATH At4g34280 (Transducin family protein / WD-40 repeat family protein) (Uncharacterized protein At4g34280/F10M10_50) 88171 At4g34280 (Transducin family protein / WD-40 repeat family protein) (Uncharacterized protein At4g34280/F10M10_50) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; receptor activity [GO:0004872]; cellular response to UV-B [GO:0071493] locus:2116179; AT4G34280 LRRcap NA NA NA NA NA NA NA ENOG411EKT3 EIF(ISO)4G2 O82233,Q9SUH8 IF4G2_ARATH,Q9SUH8_ARATH Eukaryotic translation initiation factor isoform 4G-2 (eIF(iso)4G-2),Initiation factor eIF-4 gamma, MA3 (Translation initiation factor-like protein) DISRUPTION PHENOTYPE: Displays no resistance to potyvirus. Possesses reduced amounts of chlorophyll a and b. I4g1 and i4g2 double mutants show reduced germination rates, slow growth rates, moderate chlorosis, late flowering, impaired fertility and reduced long term seed viability. They also exhibit altered responses to dehydration, salinity, and heat stress. The i4g1 and i4g2 double mutant has reduced amounts of chlorophyll a and b. {ECO:0000269|PubMed:17316629, ECO:0000269|PubMed:20694742}. Double mutant i4g1/i4g2 knockout plants show reduced germination rates slow growth rates moderate chlorosis impaired fertility and reduced long term seed viability. Double mutant plants also exhibit altered responses to dehydration salinity and heat stress. The i4g2 and i4g1/i4g2 double mutant has reduced amounts of chlorophyll a and b suggesting a role in the expression of chloroplast proteins. General protein synthesis did not appear to be affected as the levels of gross protein expression did not appear to change in the mutants. FUNCTION: Plays a role in the accumulation of some potyvirus during viral infection. {ECO:0000250}. R-ATH-156827;R-ATH-166208;R-ATH-72662;R-ATH-72702;R-ATH-975956;R-ATH-975957; 82890,28393 Eukaryotic translation initiation factor isoform 4G-2 (eIF(iso)4G-2),Initiation factor eIF-4 gamma, MA3 (Translation initiation factor-like protein) cytosol [GO:0005829]; translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417],translation initiation factor activity [GO:0003743] locus:2061370;,locus:2131919; AT2G24050,AT4G30680 MIF4G NA NA NA NA NA NA NA ENOG411EKT4 EIF4G Q76E23,A8MR97 IF4G_ARATH,A8MR97_ARATH Eukaryotic translation initiation factor 4G (eIF-4G) (eIF4G) (Protein cucumovirus multiplication 2) (Protein synthesis initiation factor 4G),Eukaryotic translation initiation factor 4G DISRUPTION PHENOTYPE: Displays resistance to potyvirus (C1YVV) infection. {ECO:0000269|PubMed:17316629}. FUNCTION: Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Plays a role in the accumulation of some potyvirus during viral infection. Required for the accumulation of cucumber mosaic virus 3a protein and turnip crinkle virus p28 replication protein during viral infection. These proteins are necessary for cell-to-cell movement of the virus. {ECO:0000269|PubMed:15163703, ECO:0000269|PubMed:17316629}. R-ATH-156827;R-ATH-166208;R-ATH-72662;R-ATH-72702;R-ATH-975956;R-ATH-975957; 187921,187551 Eukaryotic translation initiation factor 4G (eIF-4G) (eIF4G) (Protein cucumovirus multiplication 2) (Protein synthesis initiation factor 4G),Eukaryotic translation initiation factor 4G mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417]; response to abscisic acid [GO:0009737]; response to virus [GO:0009615],translation initiation factor activity [GO:0003743] locus:2081927; AT3G60240 MIF4G NA NA NA NA NA NA NA ENOG411EKT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DWNN Os03g0333900 protein A0A0P0VY02 A0A0P0VY02_ORYSJ Os03g0333900 OSNPB_030333900 ENOG411EMAC A2RVN9 A2RVN9_ARATH At3g50390 (Transducin/WD40 repeat-like superfamily protein) 51201 At3g50390 (Transducin/WD40 repeat-like superfamily protein) locus:2074825; AT3G50390 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E4GC Q9ZU92 Q9ZU92_ARATH Expressed protein (Ribosome biogenesis protein) (Uncharacterized protein At2g01640) (Uncharacterized protein At2g01640/T8O11.19) 17819 Expressed protein (Ribosome biogenesis protein) (Uncharacterized protein At2g01640) (Uncharacterized protein At2g01640/T8O11.19) locus:2065373; AT2G01640 NA Expressed protein (Os12g0244500 protein) (cDNA clone:J033080M18, full insert sequence) Q2QV41 Q2QV41_ORYSJ Os12g0244500 LOC_Os12g14110 Os12g0244500 OSNPB_120244500 ENOG411E4GE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA thaumatin-like protein Thaumatin-like protein,Os12g0630100 protein (Thaumatin-like protein, putative, expressed) (cDNA clone:J023009L15, full insert sequence),Os12g0629700 protein (Thaumatin-like protein, putative, expressed) (cDNA clone:J013123C17, full insert sequence),Os12g0629300 protein (Thaumatin-like protein, putative),Os12g0629600 protein,Os06g0281550 protein P31110,Q2QLS8,Q2QLS9,Q2QLT3,A0A0P0YCG8,A0A0N7KLX7 TLP_ORYSJ,Q2QLS8_ORYSJ,Q2QLS9_ORYSJ,Q2QLT3_ORYSJ,A0A0P0YCG8_ORYSJ,A0A0N7KLX7_ORYSJ Os12g0628600 LOC_Os12g43380,LOC_Os12g43440 Os12g0630100 OSNPB_120630100,LOC_Os12g43430 Os12g0629700 OSNPB_120629700,Os12g0629300 LOC_Os12g43390 Os12g0629300 OsJ_36954 OSNPB_120629300,Os12g0629600 OSNPB_120629600,Os06g0281550 OSNPB_060281550 ENOG411EMAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E4GW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS-box protein NA NA NA NA NA NA NA ENOG411EA41 Q9SJQ8 Q9SJQ8_ARATH DUF868 family protein, putative (DUF868) (Expressed protein) 36272 DUF868 family protein, putative (DUF868) (Expressed protein) locus:2044898; AT2G36470 Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411EA49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N2N2-dimethylguanosine tRNA methyltransferase NA NA NA NA NA NA NA ENOG411DVNP MAC12.38 Q8LPJ3,Q9FKW9,A0A1P8BFM6,A0A1P8BFL6,F4K5E7 MANA2_ARATH,MANA3_ARATH,A0A1P8BFM6_ARATH,A0A1P8BFL6_ARATH,F4K5E7_ARATH Probable alpha-mannosidase At5g13980 (EC 3.2.1.24),Probable alpha-mannosidase At5g66150 (EC 3.2.1.24),Alpha-mannosidase (EC 3.2.1.-) FUNCTION: Liberates mannose from p-nitrophenyl-alpha-D-mannoside in vitro. {ECO:0000250|UniProtKB:P94078}. ARA:AT5G13980-MONOMER;,ARA:AT5G66150-MONOMER; R-ATH-6798695;R-ATH-8853383; 3.2.1.24,3.2.1.- 115902,118008,84498,117880,104048 Probable alpha-mannosidase At5g13980 (EC 3.2.1.24),Probable alpha-mannosidase At5g66150 (EC 3.2.1.24),Alpha-mannosidase (EC 3.2.1.-) apoplast [GO:0048046]; cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872]; mannose metabolic process [GO:0006013]; protein deglycosylation [GO:0006517],vacuole [GO:0005773]; alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872]; mannose metabolic process [GO:0006013]; protein deglycosylation [GO:0006517],alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872]; mannose metabolic process [GO:0006013] locus:2159143;,locus:2156857; AT5G13980,AT5G66150 Glycosyl hydrolase family 38 protein Alpha-mannosidase (EC 3.2.1.-) Q10A56 Q10A56_ORYSJ LOC_Os10g05069 Os10g0140200 OsJ_30682 OSNPB_100140200 ENOG411DXFV AAE13 Q8H151 AAE13_ARATH Malonate--CoA ligase (EC 6.2.1.n3) (Acyl-activating enzyme 13) (Malonyl-CoA synthetase) DISRUPTION PHENOTYPE: Strong defects in growth and development and most of the plants die before flowering. Viable plants have a greatly reduced seed set with a low proportion of viable seed and accumulate malonate and succinate. {ECO:0000269|PubMed:21642549}. FUNCTION: Malonate--CoA ligase that catalyzes the formation of malonyl-CoA directly from malonate and CoA. May be required for the detoxification of malonate. {ECO:0000269|PubMed:21642549}. MISCELLANEOUS: Plants overexpressing AAE13 show increased sensitivity to exogenous malonate. 6.2.1.n3 60062 Malonate--CoA ligase (EC 6.2.1.n3) (Acyl-activating enzyme 13) (Malonyl-CoA synthetase) cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; malonyl-CoA synthetase activity [GO:0090409]; fatty acid biosynthetic process [GO:0006633]; malonate catabolic process [GO:0090410] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12805634, ECO:0000269|PubMed:21642549}. locus:2093432; AT3G16170 acyl-CoA synthetase family member 3 Os01g0761300 protein (Fragment) Q0JJ42 Q0JJ42_ORYSJ Os01g0761300 Os01g0761300 OSNPB_010761300 ENOG411DXFW PAE11,PAE7 Q9FH82,Q940J8,F4JT64 PAE11_ARATH,PAE7_ARATH,F4JT64_ARATH Pectin acetylesterase 11 (EC 3.1.1.-),Pectin acetylesterase 7 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:25115560}. FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000250|UniProtKB:B9DFR3}.,FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. 3.1.1.- 42009,42125,55833 Pectin acetylesterase 11 (EC 3.1.1.-),Pectin acetylesterase 7 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) cell wall [GO:0005618]; cytosol [GO:0005829]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] locus:2158495;,locus:2140431; AT5G45280,AT4G19410 pectinacetylesterase domain containing protein expressed Pectin acetylesterase (EC 3.1.1.-) Q0JAF0,Q7XTQ4 Q0JAF0_ORYSJ,Q7XTQ4_ORYSJ Os04g0602500 Os04g0602500 OSNPB_040602500,OSJNBa0041A02.14 Os04g0602500 OSNPB_040602500 FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. ENOG411DXFT NRPD3B,NRPB3,NRPE3B Q39212,Q39211,A0A1P8B195,A0A1P8B178,A8MR04 RPD3B_ARATH,NRPB3_ARATH,A0A1P8B195_ARATH,A0A1P8B178_ARATH,A8MR04_ARATH DNA-directed RNA polymerases IV and V subunit 3B (DNA-directed RNA polymerase II 36 kDa polypeptide B) (DNA-directed RNA polymerase II subunit RPB3-B) (RNA polymerase II subunit 3-B) (RNA polymerase II subunit B3-B),DNA-directed RNA polymerases II, IV and V subunit 3 (DNA-directed RNA polymerase II 36 kDa polypeptide A) (DNA-directed RNA polymerase II subunit RPB3-A) (RNA polymerase II subunit 3-A) (RNA polymerase II subunit B3-A),DNA-directed RNA polymerase family protein FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB3 is part of the core element with the central large cleft and the clamp element that moves to open and close the cleft. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 35575,35461,27365,27354,26414 DNA-directed RNA polymerases IV and V subunit 3B (DNA-directed RNA polymerase II 36 kDa polypeptide B) (DNA-directed RNA polymerase II subunit RPB3-B) (RNA polymerase II subunit 3-B) (RNA polymerase II subunit B3-B),DNA-directed RNA polymerases II, IV and V subunit 3 (DNA-directed RNA polymerase II 36 kDa polypeptide A) (DNA-directed RNA polymerase II subunit RPB3-A) (RNA polymerase II subunit 3-A) (RNA polymerase II subunit B3-A),DNA-directed RNA polymerase family protein DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription from RNA polymerase II promoter [GO:0006366],cytoplasm [GO:0005737]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; stomatal complex development [GO:0010374]; stomatal complex patterning [GO:0010375]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription, DNA-templated [GO:0006351] locus:2047198;,locus:2047168; AT2G15400,AT2G15430 DNA-directed RNA Polymerase II Os09g0110400 protein (Putative DNA-directed RNA polymerase II) (cDNA clone:006-305-H09, full insert sequence) (cDNA clone:J013163O03, full insert sequence) (cDNA clone:J033095G14, full insert sequence) Q6YX88 Q6YX88_ORYSJ Os09g0110400 Os09g0110400 OsJ_28369 OSNPB_090110400 P0646B04.12 ENOG411DXFU SMU1 Q8W117 SMU1_ARATH Suppressor of mec-8 and unc-52 protein homolog 1 (AtSMU-1) (RNA splicing protein SMU1) (WD40 repeat-containing protein SMU1) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:19734266}. Severe dwarf; Small leaves; Absence of flowers-B. Larkins-2009 FUNCTION: Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development. Required for proper accumulation of SMU2. {ECO:0000269|PubMed:19734266}. 57724 Suppressor of mec-8 and unc-52 protein homolog 1 (AtSMU-1) (RNA splicing protein SMU1) (WD40 repeat-containing protein SMU1) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed in actively dividing cells, such as newly emerged leaves and root tips. Detected in embryo, female gametophyte including egg cell, central cell, synergid cells and the antipodal cells, and mature pollen. {ECO:0000269|PubMed:19734266}. locus:2027749; AT1G73720 WD-40 repeat-containing protein Os01g0322800 protein (Putative WD-40 repeat protein) (cDNA clone:J023132M16, full insert sequence) Q9AWQ3 Q9AWQ3_ORYSJ Os01g0322800 Os01g0322800 OsJ_01534 OSNPB_010322800 P0426D06.40 ENOG411DXFR CTF7 A7UL74,A0A1P8B3F6 CTF7_ARATH,A0A1P8B3F6_ARATH Protein CHROMOSOME TRANSMISSION FIDELITY 7 (EC 2.3.1.-) (Cohesion establishment factor CTF7) (Protein ESTABLISHMENT OF COHESION 1),Protein CTF7 DISRUPTION PHENOTYPE: Embryo lethality, but normal endosperm development. No effect on pollen mitosis but minor alterations in female gametophyte development. Defective microsporangenesis and anthesis. {ECO:0000269|PubMed:20671110}. Embryo defective; Male gametophyte defective; Female gametophytes develop slowly-C. Makaroff-2010 FUNCTION: Acetyltransferase required for the establishment of sister chromatid cohesion. Involved in preservation of genome integrity and meiosis. Required for DNA repair and for the regulation of chromosome segregation during mitotic cell division. Knock-down mutants are extremely dwarf. {ECO:0000269|PubMed:20671110, ECO:0000269|PubMed:23750584}. R-ATH-2468052; 2.3.1.- 38988,34962 Protein CHROMOSOME TRANSMISSION FIDELITY 7 (EC 2.3.1.-) (Cohesion establishment factor CTF7) (Protein ESTABLISHMENT OF COHESION 1),Protein CTF7 cytoplasm [GO:0005737]; nucleus [GO:0005634]; acetyltransferase activity [GO:0016407]; metal ion binding [GO:0046872]; anther development [GO:0048653]; cell division [GO:0051301]; developmental vegetative growth [GO:0080186]; double-strand break repair via homologous recombination [GO:0000724]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; establishment of meiotic sister chromatid cohesion [GO:0034089]; leaf phyllotactic patterning [GO:0060772]; meiotic chromosome segregation [GO:0045132]; mitotic sister chromatid segregation [GO:0000070]; multicellular organismal reproductive process [GO:0048609]; root development [GO:0048364]; sister chromatid cohesion [GO:0007062] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, young seedlings and flower buds. Detected in the embryo, but not in the endosperm. {ECO:0000269|PubMed:20671110}. locus:2128126; AT4G31400 N-acetyltransferase Os05g0376300 protein (cDNA clone:J013159E18, full insert sequence),Os04g0498900 protein (cDNA, clone: J065201C14, full insert sequence) Q0DIM8,B7F8Z9 Q0DIM8_ORYSJ,B7F8Z9_ORYSJ Os05g0376300 Os05g0376300 OsJ_18337 OSNPB_050376300,Os04g0498900 OSNPB_040498900 ENOG411DXFS PTC52 Q8W496 PTC52_ARATH Protochlorophyllide-dependent translocon component 52, chloroplastic (ACD1-like protein) (Protein TIC 55-IV) (Translocon at the inner envelope membrane of chloroplasts 55-IV) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19995737}. FUNCTION: Part of a translocon most abundantly expressed in etiolated plants and involved in the protochlorophyllide-dependent import of the precursor NADPH:protochlorophyllide oxidoreductase A (pPORA). {ECO:0000269|PubMed:18349143}. ARA:AT4G25650-MONOMER; 63819 Protochlorophyllide-dependent translocon component 52, chloroplastic (ACD1-like protein) (Protein TIC 55-IV) (Translocon at the inner envelope membrane of chloroplasts 55-IV) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; 2 iron, 2 sulfur cluster binding [GO:0051537]; chlorophyllide a oxygenase [overall] activity [GO:0010277]; metal ion binding [GO:0046872]; protein transport [GO:0015031] locus:2131406; AT4G25650 pheophorbide a oxygenase Os03g0805700 protein,Os03g0806300 protein,Os03g0805900 protein,Os03g0805600 protein A0A0P0W530,A0A0P0W4T7,A0A0P0W4Y6,A0A0P0W4H7 A0A0P0W530_ORYSJ,A0A0P0W4T7_ORYSJ,A0A0P0W4Y6_ORYSJ,A0A0P0W4H7_ORYSJ Os03g0805700 OSNPB_030805700,Os03g0806300 OSNPB_030806300,Os03g0805900 OSNPB_030805900,Os03g0805600 OSNPB_030805600 ENOG411DXFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinacetylesterase NA NA NA NA NA NA NA ENOG411DXFQ CLPB4 Q8VYJ7 CLPB4_ARATH Chaperone protein ClpB4, mitochondrial (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 4) (Casein lytic proteinase B4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17144892}. FUNCTION: Molecular chaperone that does not seem to be involved in heat stress response or tolerance. {ECO:0000269|PubMed:17144892}. 108662 Chaperone protein ClpB4, mitochondrial (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 4) (Casein lytic proteinase B4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; protein processing [GO:0016485]; response to heat [GO:0009408] locus:2040159; AT2G25140 chaperone protein Chaperone protein ClpB3, mitochondrial (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 3) (Casein lytic proteinase B3) Q0E3C8 CLPB3_ORYSJ CLPB3 CLPB-M Os02g0181900 LOC_Os02g08490 FUNCTION: Molecular chaperone that may not be involved in heat stress response or tolerance. ENOG411DXFZ KIN14L F4J2M6,A0A1I9LMT1 KN14L_ARATH,A0A1I9LMT1_ARATH Kinesin-like protein KIN-14L,P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein ARA:GQT-1280-MONOMER; 107010,108271 Kinesin-like protein KIN-14L,P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2076289; AT3G10310 K10406 kinesin family member C2 C3 Kinesin-like protein KIN-14A B9EUM5 KN14A_ORYSJ KIN14A Os01g0243100 LOC_Os01g14090 B1066G12.23 OsJ_01073 ENOG411DXFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VIT family NA NA NA NA NA NA NA ENOG411DXFY CSY4,CSY5 P20115,Q9M1D3,A0A1I9LSJ5,A0A1I9LSJ6 CISY4_ARATH,CISY5_ARATH,A0A1I9LSJ5_ARATH,A0A1I9LSJ6_ARATH Citrate synthase 4, mitochondrial (EC 2.3.3.16),Citrate synthase 5, mitochondrial (EC 2.3.3.16),Citrate synthase MISCELLANEOUS: Citrate synthase is found in nearly all cells capable of oxidative metabolism. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2. ARA:AT2G44350-MONOMER;,ARA:AT3G60100-MONOMER; R-ATH-71403; 2.3.3.16 52782,51724,46841,52407 Citrate synthase 4, mitochondrial (EC 2.3.3.16),Citrate synthase 5, mitochondrial (EC 2.3.3.16),Citrate synthase cell wall [GO:0005618]; chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; citrate (Si)-synthase activity [GO:0004108]; zinc ion binding [GO:0008270]; response to cadmium ion [GO:0046686]; tricarboxylic acid cycle [GO:0006099],mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; citrate (Si)-synthase activity [GO:0004108]; tricarboxylic acid cycle [GO:0006099],citrate (Si)-synthase activity [GO:0004108]; tricarboxylic acid cycle [GO:0006099] locus:2050554;,locus:2101467; AT2G44350,AT3G60100 citrate synthase Citrate synthase,Citrate synthase (Fragment),Os11g0623601 protein Q7F8R1,A0A0P0Y2X7,A0A0P0Y4G2 Q7F8R1_ORYSJ,A0A0P0Y2X7_ORYSJ,A0A0P0Y4G2_ORYSJ P0437H03.132 Os02g0194100 OSNPB_020194100,Os11g0538900 OSNPB_110538900,Os11g0623601 OSNPB_110623601 ENOG411DXFF PCMP-E5 O49287 PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial 77874 Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2025242; AT1G77010 Pentatricopeptide repeat-containing protein Os03g0849700 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J033044J01, full insert sequence) Q10AK3 Q10AK3_ORYSJ Os03g0849700 LOC_Os03g63260 OSNPB_030849700 ENOG411DXFG F28J15.5 Q9C7D5,Q94K65 Q9C7D5_ARATH,Q94K65_ARATH DNA binding protein (Uncharacterized protein F28J15.5),DNA binding protein (Uncharacterized protein At3g12210) 23454,17580 DNA binding protein (Uncharacterized protein F28J15.5),DNA binding protein (Uncharacterized protein At3g12210) locus:2082224; AT3G12210 Inherit from euNOG: Conserved hypothetical protein Os03g0728600 protein A0A0N7KHZ5 A0A0N7KHZ5_ORYSJ Os03g0728600 OSNPB_030728600 ENOG411DXFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0631900 protein (Putative 29 kDa ribonucleoprotein A, chloroplast) Q8LHN4 Q8LHN4_ORYSJ P0519E12.113 Os07g0631900 OsJ_25244 OSNPB_070631900 ENOG411DXFE F24D7.19 Q9CAC8,A0A1P8ANV0,F4I3N6 Q9CAC8_ARATH,A0A1P8ANV0_ARATH,F4I3N6_ARATH At1g63610 (Uncharacterized protein At1g63610) (Uncharacterized protein F24D7.19),Uncharacterized protein 37955,20535,28763 At1g63610 (Uncharacterized protein At1g63610) (Uncharacterized protein F24D7.19),Uncharacterized protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; valine-tRNA ligase activity [GO:0004832]; valyl-tRNA aminoacylation [GO:0006438] locus:2026669; AT1G63610 NA Os02g0833400 protein (Seed maturation-like protein) (cDNA clone:J033024H02, full insert sequence),Os02g0833400 protein (Fragment) Q6ESB6,A0A0P0VRR4,A0A0N7KGE4 Q6ESB6_ORYSJ,A0A0P0VRR4_ORYSJ,A0A0N7KGE4_ORYSJ Os02g0833400 Os02g0833400 OJ1282_E10.11 OSNPB_020833400,Os02g0833400 OSNPB_020833400 ENOG411DXFB Q9SV25,Q58G10 Q9SV25_ARATH,Q58G10_ARATH Transcriptional regulator of RNA polII, SAGA, subunit (Uncharacterized protein AT4g31440) (Uncharacterized protein F3L17.10),Transcriptional regulator of RNA polII, SAGA, subunit 41802,45757 Transcriptional regulator of RNA polII, SAGA, subunit (Uncharacterized protein AT4g31440) (Uncharacterized protein F3L17.10),Transcriptional regulator of RNA polII, SAGA, subunit SAGA complex [GO:0000124]; transcription coactivator activity [GO:0003713]; histone H3 acetylation [GO:0043966]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2125279;,locus:2046693; AT4G31440,AT2G24530 NA Os04g0658100 protein Q0J9E6 Q0J9E6_ORYSJ Os04g0658100 Os04g0658100 OSNPB_040658100 ENOG411DXFA LBD13 Q9AT61,Q682H4,A0A1P8AYC6,F4IMS7 LBD13_ARATH,Q682H4_ARATH,A0A1P8AYC6_ARATH,F4IMS7_ARATH LOB domain-containing protein 13 (ASYMMETRIC LEAVES 2-like protein 10) (AS2-like protein 10),Structure-specific endonuclease subunit SLX1 homolog (EC 3.1.-.-),LOB domain-containing protein 13,Excinuclease ABC, C subunit, N-terminal FUNCTION: Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. {ECO:0000256|HAMAP-Rule:MF_03100}. 3.1.-.- 29091,41401,29117,37428 LOB domain-containing protein 13 (ASYMMETRIC LEAVES 2-like protein 10) (AS2-like protein 10),Structure-specific endonuclease subunit SLX1 homolog (EC 3.1.-.-),LOB domain-containing protein 13,Excinuclease ABC, C subunit, N-terminal membrane [GO:0016020],Slx1-Slx4 complex [GO:0033557]; 5'-flap endonuclease activity [GO:0017108]; DNA recombination [GO:0006310]; DNA repair [GO:0006281] TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. locus:2065769;,locus:2065775; AT2G30340,AT2G30350 Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates introducing single-strand cuts in duplex DNA close to junctions with ss-DNA (By similarity) Structure-specific endonuclease subunit SLX1 homolog (EC 3.1.-.-) A0A0N7KN59 A0A0N7KN59_ORYSJ Os07g0230500 OSNPB_070230500 FUNCTION: Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. {ECO:0000256|HAMAP-Rule:MF_03100}. ENOG411DXFN PAM1 Q8LAF3,O81347,A0A1I9LLQ0,A0A1I9LLP9,A0A1I9LLQ1,F4J9K1 Q8LAF3_ARATH,O81347_ARATH,A0A1I9LLQ0_ARATH,A0A1I9LLP9_ARATH,A0A1I9LLQ1_ARATH,F4J9K1_ARATH At3g02460 (Putative plant adhesion molecule) (Ypt/Rab-GAP domain of gyp1p superfamily protein),Plant adhesion molecule 1 (Plant adhesion molecule 1 (PAM1)),Ypt/Rab-GAP domain of gyp1p superfamily protein R-ATH-1445148;R-ATH-8854214; 40614,41028,35428,39905,33136,38395 At3g02460 (Putative plant adhesion molecule) (Ypt/Rab-GAP domain of gyp1p superfamily protein),Plant adhesion molecule 1 (Plant adhesion molecule 1 (PAM1)),Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338],integral component of membrane [GO:0016021] locus:2076949;,locus:2146117; AT3G02460,AT5G15930 TBC Os08g0412600 protein (cDNA clone:J013111E20, full insert sequence) Q0J5Q6 Q0J5Q6_ORYSJ Os08g0412600 Os08g0412600 OSNPB_080412600 ENOG411DXFM ACR4 Q8LJW3,F4I0I7 ACR4_ARATH,F4I0I7_ARATH ACT domain-containing protein ACR4 (Protein ACT DOMAIN REPEATS 4),ACT domain repeat 4 FUNCTION: May bind amino acids. {ECO:0000303|PubMed:12481063}. 50820,51253 ACT domain-containing protein ACR4 (Protein ACT DOMAIN REPEATS 4),ACT domain repeat 4 plasmodesma [GO:0009506],cytosol [GO:0005829]; plasmodesma [GO:0009506]; regulation of cellular amino acid metabolic process [GO:0006521]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in leaves and siliques. {ECO:0000269|PubMed:12481063}. locus:2033223; AT1G69040 ACT domain ACT domain containing protein, putative, expressed (ACT-domain repeat protein 7) (Os03g0413100 protein) (Putative ACT domain containing protein, ACR4, with alternative splicing forms) (cDNA clone:001-113-G09, full insert sequence),ACT domain containing protein, putative, expressed (ACT-domain repeat protein 5) (Os03g0598100 protein) (Putative ACT domain repeat protein),Os03g0413100 protein Q75IY1,Q84TZ0,A0A0P0VZJ6 Q75IY1_ORYSJ,Q84TZ0_ORYSJ,A0A0P0VZJ6_ORYSJ OsACR7 LOC_Os03g29980 Os03g0413100 Os03g29980 OSNPB_030413100,OSJNBa0087M10.8 OsACR5 LOC_Os03g40100 Os03g0598100 OsJ_11646 OSNPB_030598100,Os03g0413100 OSNPB_030413100 ENOG411DXFJ Q6AWX0,Q0WWW9,Q8L6Z8,F4KFK7 XYLL2_ARATH,XYLL3_ARATH,XYLL1_ARATH,F4KFK7_ARATH D-xylose-proton symporter-like 2,D-xylose-proton symporter-like 3, chloroplastic,D-xylose-proton symporter-like 1,Major facilitator superfamily protein Drastic delay in flowering. Plants do not start bolting until 30-40 days after germination vs. 21-26 days for the wild type. All mutant plants eventually produce shoots with flowers and seeds comparable with those formed by wild type. However about 20% of the mutant seeds do not germinate. Low germination rate; Late flowering-M. Buttner-2007 R-ATH-189200; 53538,59829,53542,47087 D-xylose-proton symporter-like 2,D-xylose-proton symporter-like 3, chloroplastic,D-xylose-proton symporter-like 1,Major facilitator superfamily protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; fructose transmembrane transporter activity [GO:0005353]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; fructose transport [GO:0015755]; glucose import [GO:0046323]; glucose transport [GO:0015758]; positive regulation of flower development [GO:0009911]; response to nematode [GO:0009624]; seed germination [GO:0009845],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2148201;,locus:2168494;,locus:2097780; AT5G17010,AT5G59250,AT3G03090 D-xylose-proton symporter-like Os10g0579200 protein (Putative sugar transporter protein) (Sugar transporter family protein, expressed) (cDNA clone:J033079P13, full insert sequence),Os03g0823200 protein (Fragment) Q7XBT2,A0A0P0W4Z9 Q7XBT2_ORYSJ,A0A0P0W4Z9_ORYSJ Os10g0579200 LOC_Os10g42830 Os10g0579200 OsJ_32598 OSJNBa0056G17.3 OSNPB_100579200,Os03g0823200 OSNPB_030823200 ENOG411DXFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA geranylgeranyl diphosphate reductase Os01g0265000 protein (Putative geranylgeranyl hydrogenase),Os04g0561350 protein Q5NB98,A0A0P0WDI2 Q5NB98_ORYSJ,A0A0P0WDI2_ORYSJ Os01g0265000 Os01g0265000 OSNPB_010265000 P0453A06.30 P0499C11.12,Os04g0561350 OSNPB_040561350 ENOG411DXFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os03g0608700 protein (Transposon protein, putative, CACTA, En/Spm sub-class, expressed) (cDNA clone:J013045L13, full insert sequence),Os03g0608700 protein (Transposon protein, putative, CACTA, En/Spm sub-class, expressed) (cDNA clone:001-123-C09, full insert sequence) (cDNA clone:J033024P11, full insert sequence),Os08g0106700 protein (Fragment),Os05g0580550 protein Q10GY8,Q10GY9,A0A0P0XAV5,A0A0P0WR30 Q10GY8_ORYSJ,Q10GY9_ORYSJ,A0A0P0XAV5_ORYSJ,A0A0P0WR30_ORYSJ Os03g0608700 LOC_Os03g41200 OSNPB_030608700,Os08g0106700 OSNPB_080106700,Os05g0580550 OSNPB_050580550 ENOG411DXFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0805100 protein (Fragment) A0A0N7KDX4 A0A0N7KDX4_ORYSJ Os01g0805100 OSNPB_010805100 ENOG411DXF6 VIT1 Q9ZUA5 VIT1_ARATH Vacuolar iron transporter 1 (AtVIT1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but important reduced growth and leaves with severe chlorosis when grown on soil at pH 7.9 that causes limited iron availability. {ECO:0000269|PubMed:17082420}. FUNCTION: Vacuolar iron transporter involved in the transfer of iron from the cytosol to the vacuole for intracellular iron storage. Vacuolar iron storage is required for seed embryo and seedling development. {ECO:0000269|PubMed:17082420}. MISCELLANEOUS: Can mediate iron sequestration into vacuoles when expressed in the yeast ccc1 mutant. In seeds, iron is strongly localized to the provascular strands of the hypocotyl, radicle, and cotyledons, but completely absent from these cells in vit1-1 mutant. 26860 Vacuolar iron transporter 1 (AtVIT1) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to iron ion [GO:0071281]; intracellular sequestering of iron ion [GO:0006880]; iron ion homeostasis [GO:0055072]; manganese ion transmembrane transport [GO:0071421] TISSUE SPECIFICITY: Highly expressed in developing embryo and seed. Expressed in young seedlings, predominantly in the vasculature. {ECO:0000269|PubMed:17082420}. locus:2065383; AT2G01770 vacuolar iron transporter Vacuolar iron transporter 1.1 (OsVIT1.1),Vacuolar iron transporter 1.2 (OsVIT1.2),Os09g0396900 protein Q6MWE5,Q6ERE5,A0A0P0XMS4 VIT11_ORYSJ,VIT12_ORYSJ,A0A0P0XMS4_ORYSJ VIT1.1 Os04g0463400 LOC_Os04g38940 B1358B12.19 OsJ_15080,VIT1.2 Os09g0396900 LOC_Os09g23300 OJ1655_B12.5 OsJ_29262,Os09g0396900 OSNPB_090396900 FUNCTION: Probable vacuolar iron transporter that may be involved in the transfer of iron from the cytosol to the vacuole for intracellular iron storage. {ECO:0000250}. ENOG411DXF7 EXPA16,EXPA6,EXPA4 Q9M2S9,Q38865,O48818 EXP16_ARATH,EXPA6_ARATH,EXPA4_ARATH Expansin-A16 (AtEXPA16) (Alpha-expansin-16) (At-EXP16) (AtEx16) (Ath-ExpAlpha-1.7),Expansin-A6 (AtEXPA6) (Alpha-expansin-6) (At-EXP6) (AtEx6) (Ath-ExpAlpha-1.8),Expansin-A4 (AtEXPA4) (Alpha-expansin-4) (At-EXP4) (AtEx4) (Ath-ExpAlpha-1.6) FUNCTION: Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 28162,27818,27848 Expansin-A16 (AtEXPA16) (Alpha-expansin-16) (At-EXP16) (AtEx16) (Ath-ExpAlpha-1.7),Expansin-A6 (AtEXPA6) (Alpha-expansin-6) (At-EXP6) (AtEx6) (Ath-ExpAlpha-1.8),Expansin-A4 (AtEXPA4) (Alpha-expansin-4) (At-EXP4) (AtEx4) (Ath-ExpAlpha-1.6) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall organization [GO:0009664]; syncytium formation [GO:0006949],extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plant-type cell wall organization [GO:0009664]; syncytium formation [GO:0006949],cytosol [GO:0005829]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; plant-type cell wall organization [GO:0009664]; syncytium formation [GO:0006949] TISSUE SPECIFICITY: Expressed in the vascular bundles throughout the plant. {ECO:0000269|Ref.6}. locus:2099991;,locus:2053260;,locus:2043240; AT3G55500,AT2G28950,AT2G39700 expansin Expansin-A7 (Alpha-expansin-7) (OsEXP7) (OsEXPA7) (OsaEXPa1.26),Os03g0822000 protein Q852A1,A0A0N7KIA9 EXPA7_ORYSJ,A0A0N7KIA9_ORYSJ EXPA7 EXP7 Os03g0822000 LOC_Os03g60720 OsJ_13156 OSJNBb0081B07.24,Os03g0822000 OSNPB_030822000 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DXF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May aid fertilization by loosening the cell wall of the stigma and style thereby facilitating penetration of the pollen tube. Acts selectively on grass cell walls which are relatively poor in pectins and xyloglucans and rich in glucuronoarabinoxylans and (1-3)(1-4)-beta-D-glucans when compared with cell walls of other angiosperms including other monocots Expansin-B9 (Beta-expansin-9) (OsEXPB9) (OsaEXPb1.6) Q7XCG7 EXPB9_ORYSJ EXPB9 Os10g0548600 LOC_Os10g40090 OsJ_32365 OSJNBa0082M15.4 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DXF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Permease family Os08g0420600 protein (Putative permease) (cDNA clone:J033041K18, full insert sequence),Os09g0381100 protein (Putative permease 1) (cDNA clone:J013000L20, full insert sequence),Os09g0381100 protein (Fragment) Q6ZIE6,Q6H5A2,A0A0P0XL08 Q6ZIE6_ORYSJ,Q6H5A2_ORYSJ,A0A0P0XL08_ORYSJ Os08g0420600 Os08g0420600 OJ1188_F05.18 OsJ_27344 OSNPB_080420600,Os09g0381100 Os09g0381100 OsJ_29191 OSNPB_090381100 P0027G10.52,Os09g0381100 OSNPB_090381100 ENOG411DXF2 MYB63 Q6R0A6,A0A1P8AQ56 MYB63_ARATH,A0A1P8AQ56_ARATH Transcription factor MYB63 (Myb-related protein 63) (AtMYB63),Myb domain protein 63 DISRUPTION PHENOTYPE: Reduction in secondary wall thickening and lignin content. {ECO:0000269|PubMed:19122102}. FUNCTION: Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. 33780,37644 Transcription factor MYB63 (Myb-related protein 63) (AtMYB63),Myb domain protein 63 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; lignin biosynthetic process [GO:0009809]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to UV [GO:0009411]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: In nonelongating internodes, highly expressed in interfascicular fibers and xylem cells but not in parenchymatous pith cells. In elongating internodes, predominantly expressed in interfascicular fibers. Accumulates in the developing secondary xylem of roots. {ECO:0000269|PubMed:19122102}. TISSUE SPECIFICITY: Expressed at low levels in stems, roots and siliques (PubMed:9839469). Specifically expressed in fibers and vessels undergoing secondary wall thickening, especially in inflorescence stems (PubMed:19122102). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:9839469}. locus:2207330; AT1G79180 Myb-related protein OSJNBa0009P12.32 protein (Os04g0594100 protein) Q0JAJ7 Q0JAJ7_ORYSJ Os04g0594100 Os04g0594100 OSJNBa0009P12.32 OSNPB_040594100 ENOG411DXF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphofructokinase ATP-dependent 6-phosphofructokinase (ATP-PFK) (Phosphofructokinase) (EC 2.7.1.11) (Phosphohexokinase),Os05g0194900 protein (Fragment) Q5SNH5,Q0DK50 Q5SNH5_ORYSJ,Q0DK50_ORYSJ PFK Os01g0191700 OSNPB_010191700 P0671B11.3 P0710E05.38,Os05g0194900 Os05g0194900 OSNPB_050194900 FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000256|HAMAP-Rule:MF_03186}. ENOG411DXF0 ELP4 Q9C778 ELP4_ARATH Elongator complex protein 4 (AtELP4) (Elongator component 4) (Protein ELONGATA 1) DISRUPTION PHENOTYPE: Narrow leaves and reduced root growth that results from a decreased cell division rate and a reduced apical dominance. Delayed germination after imbibition. Enhancement of germination and inhibition of leaf growth at high sucrose concentrations. Hypersensitive to abscisic acid (ABA) in seed germination and seedling growth. At the cellular level, hypotonic vacuole, alterations in the size of grana and starch grains in the chloroplasts, and massive presence of Golgi vesicles in the cytoplasm. Higher resistance to oxidative stress mediated by methyl viologen (MV) that blocks electron transport during photosynthesis and by CsCl in light. Accumulates anthocyanins. {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:17565971, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. Very low germination rate; Slow seedling growth; Narrow leaves; Short primary root; Short inflorescence stems with abnormal architecture-M. Van Lijsebettens-2005 FUNCTION: Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Promotes organs development by modulating cell division rate. May regulate mechanisms producing carbon assimilates or importing sucrose. Involved in the repression of the abscisic acid (ABA) signaling pathway during seed germination and seedling growth. Required for auxin distribution or signaling. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:17565971, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. 38731 Elongator complex protein 4 (AtELP4) (Elongator component 4) (Protein ELONGATA 1) cytoplasm [GO:0005737]; Elongator holoenzyme complex [GO:0033588]; histone acetyltransferase complex [GO:0000123]; transcription elongation factor complex [GO:0008023]; RNA polymerase II core binding [GO:0000993]; transferase activity, transferring acyl groups [GO:0016746]; abscisic acid-activated signaling pathway [GO:0009738]; auxin-activated signaling pathway [GO:0009734]; cellular response to sucrose stimulus [GO:0071329]; histone H3 acetylation [GO:0043966]; histone H4 acetylation [GO:0043967]; multicellular organism development [GO:0007275]; negative regulation of anthocyanin metabolic process [GO:0031538]; positive regulation of cell proliferation [GO:0008284]; regulation of auxin mediated signaling pathway [GO:0010928]; regulation of carbon utilization [GO:0043609]; regulation of leaf development [GO:2000024]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979]; transcription elongation from RNA polymerase II promoter [GO:0006368] TISSUE SPECIFICITY: Expressed in meristematic tissues of roots, leaves, stems, seedlings, cotyledons, flowers, siliques, guard cells, floral buds, and shoot apices. {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. AT3G11220 elongator complex protein Os06g0639600 protein (Paxneb protein-like) Q67WD2 Q67WD2_ORYSJ Os06g0639600 Os06g0639600 OsJ_22107 OSNPB_060639600 P0458E02.15 P0523F01.44 ENOG411DXF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fip1 motif Os03g0308900 protein (Fragment),Os03g0308850 protein A0A0N7KH51,A0A0P0VWK8 A0A0N7KH51_ORYSJ,A0A0P0VWK8_ORYSJ Os03g0308900 OSNPB_030308900,Os03g0308850 OSNPB_030308850 ENOG411DXF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Os02g0518500 protein (Putative zinc finger protein) Q6H4M3 Q6H4M3_ORYSJ Os02g0518500 OsJ_06922 OSNPB_020518500 P0461D06.10 ENOG411DXF9 PCMP-H8 Q0WN60 PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 108809 Pentatricopeptide repeat-containing protein At1g18485 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:505006130; AT1G18485 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DVNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0525700 protein,Os08g0525700 protein (Fragment) Q84QV5,A0A0N7KQ63 Q84QV5_ORYSJ,A0A0N7KQ63_ORYSJ OJ1191_A10.120 Os08g0525700 OSNPB_080525700,Os08g0525700 OSNPB_080525700 ENOG411EEW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain NA NA NA NA NA NA NA ENOG411EEWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EEWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os07g0120500 protein,Os07g0118200 protein,Os07g0120000 protein,Os07g0120300 protein,Os07g0120100 protein (cDNA clone:001-110-C08, full insert sequence),Os07g0118250 protein Q8LHX6,Q8H5J1,Q0D8Y5,Q8LHX8,Q7XIE9,Q8H5J0 Q8LHX6_ORYSJ,Q8H5J1_ORYSJ,Q0D8Y5_ORYSJ,Q8LHX8_ORYSJ,Q7XIE9_ORYSJ,Q8H5J0_ORYSJ P0022B05.126 Os07g0120500 OsJ_22914 OSNPB_070120500,OJ1119_A04.127 Os07g0118200 OsJ_22895 OSNPB_070118200,Os07g0120000 Os07g0120000 OsJ_22909 OSNPB_070120000,P0022B05.124 Os07g0120300 OsJ_22912 OSNPB_070120300,P0022B05.122 Os07g0120100 OSNPB_070120100,OJ1119_A04.128 Os07g0118250 OsJ_22896 OSNPB_070118250 ENOG411EEWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411EEWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MutS domain I NA NA NA NA NA NA NA ENOG411EEWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEWM HIPP01 Q9ZUV1 HIP1_ARATH Heavy metal-associated isoprenylated plant protein 1 (AtHIP01) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 27468 Heavy metal-associated isoprenylated plant protein 1 (AtHIP01) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2046183; AT2G28090 Heavy-metal-associated domain-containing protein NA NA NA NA NA NA NA ENOG411EEWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP NA NA NA NA NA NA NA ENOG411EEWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) Os01g0906300 protein (p0497A05.1 protein) Q8LIX0 Q8LIX0_ORYSJ P0497A05.1 Os01g0906300 B1417F08.7 OSNPB_010906300 ENOG411EEWU PYL13 Q9SN51 PYL13_ARATH Abscisic acid receptor PYL13 (PYR1-like protein 13) (Regulatory components of ABA receptor 7) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition (By similarity). Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs), selectively PP2CA, in an ABA-independent manner (PubMed:24165892). {ECO:0000250|UniProtKB:O49686, ECO:0000269|PubMed:24165892}. 18127 Abscisic acid receptor PYL13 (PYR1-like protein 13) (Regulatory components of ABA receptor 7) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738] locus:2124077; AT4G18620 Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411EEWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA H3 NA NA NA NA NA NA NA ENOG411DZ28 Q9FHS6 FK119_ARATH F-box/kelch-repeat protein At5g43190 45447 F-box/kelch-repeat protein At5g43190 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2169253; AT5G43190 F-box kelch-repeat protein NA NA NA NA NA NA NA ENOG411DZ29 Q8GXP7,B3H4A1 Q8GXP7_ARATH,B3H4A1_ARATH Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (Uncharacterized protein At5g27390/F21A20_100),Mitochondrial inner membrane translocase complex, subunit Tim44-related protein 36495,34485 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (Uncharacterized protein At5g27390/F21A20_100),Mitochondrial inner membrane translocase complex, subunit Tim44-related protein mitochondrion [GO:0005739] locus:4010713974; AT5G27395 ribosomal protein L45 Os07g0647300 protein A0A0P0X9H0 A0A0P0X9H0_ORYSJ Os07g0647300 OSNPB_070647300 ENOG411DZ20 O80456,A0A1P8AY18 O80456_ARATH,A0A1P8AY18_ARATH Acyl-CoA (At2g23390/F26B6.4) (Uncharacterized protein At2g23390),Acyl-CoA 54310,38180 Acyl-CoA (At2g23390/F26B6.4) (Uncharacterized protein At2g23390),Acyl-CoA locus:2046847; AT2G23390 Protein of unknown function DUF482 Os04g0442200 protein Q0JCZ2 Q0JCZ2_ORYSJ Os04g0442200 Os04g0442200 OsJ_14922 OSNPB_040442200 ENOG411DZ21 Q9XIB2 Q9XIB2_ARATH F13F21.11 protein (Transducin/WD40 repeat-like superfamily protein) 52496 F13F21.11 protein (Transducin/WD40 repeat-like superfamily protein) locus:2010157; AT1G49450 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DZ22 PV42A Q9XI37 PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a (AtPV42a) (AKIN subunit gamma-like PV42a) (CBS domain-containing protein CBSCBS4) DISRUPTION PHENOTYPE: Shorter siliques and reduced seed sets in pv42a and pv42b RNAi double mutant. {ECO:0000269|PubMed:21533063}. FUNCTION: Plays redundant role with PV42b in regulating male gametogenesis and pollen tube guidance. {ECO:0000269|PubMed:21533063}. 38596 SNF1-related protein kinase regulatory subunit gamma-like PV42a (AtPV42a) (AKIN subunit gamma-like PV42a) (CBS domain-containing protein CBSCBS4) developmental process involved in reproduction [GO:0003006]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; pollen tube guidance [GO:0010183]; stamen development [GO:0048443] TISSUE SPECIFICITY: Expressed highly in rosette leaves, cauline leaves, open flowers, developing siliques and dry seeds, but at a low level in stems and floral buds. {ECO:0000269|PubMed:21533063}. locus:2037853; AT1G15330 CBS domain NA NA NA NA NA NA NA ENOG411DZ23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 Os01g0129600 protein (Fragment) A0A0P0UXR8 A0A0P0UXR8_ORYSJ Os01g0129600 OSNPB_010129600 ENOG411DZ24 GATL3 Q0V7R1 GATL3_ARATH Probable galacturonosyltransferase-like 3 (EC 2.4.1.-) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 39852 Probable galacturonosyltransferase-like 3 (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489]; polysaccharide biosynthetic process [GO:0000271] locus:2205314; AT1G13250 Galacturonosyltransferase-like Hexosyltransferase (EC 2.4.1.-) Q7X734 Q7X734_ORYSJ Os04g0530900 OSJNBa0074L08.24 OSJNBa0081C01.12 OSNPB_040530900 ENOG411DZ25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Os03g0425900 protein (Putative zinc finger protein (C2H2-type)) (Zinc finger, C2H2 type family protein, expressed) (cDNA clone:001-128-E09, full insert sequence) Q75GS7 Q75GS7_ORYSJ OSJNBa0020H02.7 LOC_Os03g31240 Os03g0425900 OSNPB_030425900 ENOG411DZ26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os05g0384300 protein,Os01g0868600 protein (Putative aspartic proteinase nepenthesin I),Os12g0450300 protein,Os01g0868500 protein,Os05g0383700 protein Q6AV12,Q8S1N5,A0A0P0Y9U1,A0A0P0VAW6,A0A0P0WLV5 Q6AV12_ORYSJ,Q8S1N5_ORYSJ,A0A0P0Y9U1_ORYSJ,A0A0P0VAW6_ORYSJ,A0A0P0WLV5_ORYSJ Os05g0384300 Os05g0384300 OJ1354_D07.8 OsJ_18383 OSNPB_050384300,P0677H08.22 Os01g0868600 OSNPB_010868600,Os12g0450300 OSNPB_120450300,Os01g0868500 OSNPB_010868500,Os05g0383700 OSNPB_050383700 ENOG411DZ27 RDM4 Q8GYP3 RDM4_ARATH RNA-directed DNA methylation 4 (Protein DEFECTIVE IN MERISTEM SILENCING 4) DISRUPTION PHENOTYPE: Reduced DNA methylation at RdDM target loci and pleiotropic developmental phenotype. {ECO:0000269|PubMed:19903758, ECO:0000269|PubMed:20010803}. Mutants displays defects in plant development and RNA-directed DNA methylation. Floral inflorescences of mutant plants are more closely packed than those of wild type. Mutant seedlings are pale and grow slowly. Short internode distances and disturbed phyllotaxy. Increased seed dormancy; Pale green seedlings; Slow growth; Dwarf; Abnormal phyllotaxy; Abnormal rosette leaf morphology; Reduced fertility; Late flowering; Altered DNA methylation-M. Matzke-2009 FUNCTION: Probable regulatory factor for several RNA polymerases. Effector involved in facilitation of Pol V transcription as RNA scaffold and recruitment of silencing complex to target genomic sites. {ECO:0000269|PubMed:19903758, ECO:0000269|PubMed:20010803}. 40079 RNA-directed DNA methylation 4 (Protein DEFECTIVE IN MERISTEM SILENCING 4) transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin silencing [GO:0006342]; DNA methylation [GO:0006306]; gene silencing by RNA [GO:0031047]; post-embryonic development [GO:0009791]; regulation of transcription, DNA-templated [GO:0006355] locus:2065764; AT2G30280 NA Expressed protein (Os12g0110300 protein) (cDNA clone:001-009-H10, full insert sequence),Os11g0110066 protein (cDNA, clone: J065191E12, full insert sequence) Q2QYQ0,B7F8Y2 Q2QYQ0_ORYSJ,B7F8Y2_ORYSJ Os12g0110300 LOC_Os12g01940 Os12g0110300 OsJ_34972 OSNPB_120110300,Os11g0110066 OSNPB_110110066 ENOG411DZ2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Malate dehydrogenase Malate dehydrogenase (EC 1.1.1.37) Q7FAT9 Q7FAT9_ORYSJ Os04g0551200 OsJ_15699 OSJNBa0010H02.1 OSNPB_040551200 ENOG411DZ2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Removal of H(2)O(2) oxidation of toxic reductants biosynthesis and degradation of lignin suberization auxin catabolism response to environmental stresses such as wounding pathogen attack and oxidative stress. These functions might be dependent on each isozyme isoform in each plant tissue Peroxidase 2 (EC 1.11.1.7),Peroxidase (EC 1.11.1.7),Os03g0339300 protein,Os07g0677200 protein (Fragment) Q0D3N0,Q7XIX0,Q7F1U1,Q7XIX1,Q5U1Q2,Q7F1U0,A0A0P0VY50,A0A0P0XAM5 PER2_ORYSJ,Q7XIX0_ORYSJ,Q7F1U1_ORYSJ,Q7XIX1_ORYSJ,Q5U1Q2_ORYSJ,Q7F1U0_ORYSJ,A0A0P0VY50_ORYSJ,A0A0P0XAM5_ORYSJ PRX112 POXGX9 Os07g0677300 LOC_Os07g48030 OJ1167_G06.126 OJ1409_C08.1 OsJ_25570,prx114 OJ1167_G06.129 Os07g0677500 OJ1409_C08.4 OSNPB_070677500,OJ1167_G06.124 Os07g0677100 OSNPB_070677100,Os07g0677400 OJ1167_G06.128 prx113 Os07g0677400 OJ1409_C08.3 OSNPB_070677400,prx41 LOC_Os03g22010 Os03g0339300 OSNPB_030339300,OJ1167_G06.125 Os07g0677200 OSNPB_070677200,Os03g0339300 OSNPB_030339300,Os07g0677200 OSNPB_070677200 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. ENOG411DZ2J F11F8_2 Q9S710 Q9S710_ARATH F3L24.34 protein (Fusaric acid resistance family protein) (Uncharacterized protein F11F8_2) 85684 F3L24.34 protein (Fusaric acid resistance family protein) (Uncharacterized protein F11F8_2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transport [GO:0006810] locus:2074889; AT3G09450 Fusaric acid resistance protein family NA NA NA NA NA NA NA ENOG411DZ2K ARASP,ARASP2 O80885,O23053,F4ITR5 ARASP_ARATH,ARAS2_ARATH,F4ITR5_ARATH Membrane metalloprotease ARASP, chloroplastic (EC 3.4.24.-),Probable membrane metalloprotease ARASP2, chloroplastic (EC 3.4.24.-),Chloroplastic membrane metallo proteases DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:16413549}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16413549}. FUNCTION: Metalloprotease essential for chloroplast and plant development. May be involved in regulated intramembrane proteolysis (RIP). {ECO:0000269|PubMed:16413549}.,FUNCTION: Metalloprotease essential for chloroplast and plant development. May be involved in regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:O80885}. 3.4.24.- 48726,47775,44408 Membrane metalloprotease ARASP, chloroplastic (EC 3.4.24.-),Probable membrane metalloprotease ARASP2, chloroplastic (EC 3.4.24.-),Chloroplastic membrane metallo proteases chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; chloroplast organization [GO:0009658],chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; response to cold [GO:0009409],integral component of membrane [GO:0016021]; metalloendopeptidase activity [GO:0004222] TISSUE SPECIFICITY: Expressed in green seedlings and cotyledons. Low levels of expression in roots, siliques and seeds. {ECO:0000269|PubMed:16413549}. locus:2060295;,locus:2207145; AT2G32480,AT1G05140 zinc metalloprotease Membrane-associated zinc metalloprotease family protein, expressed (Os03g0579000 protein) (Putative sterol-regulatory element binding protein (SREBP) site 2 protease) (cDNA clone:001-017-C01, full insert sequence) (cDNA clone:J023147F22, full insert sequence),Os05g0388025 protein (Fragment) Q84NY6,A0A0P0WLR2 Q84NY6_ORYSJ,A0A0P0WLR2_ORYSJ LOC_Os03g38230 Os03g0579000 OsJ_11535 OSJNBa0083K01.13 OSJNBb0016P23.2 OSNPB_030579000,Os05g0388025 OSNPB_050388025 ENOG411DZ2M CBP60A,calmodulin-binding protein 60a C0SVV6,A0A1P8BCW0,A0A1P8BCW4 CB60A_ARATH,A0A1P8BCW0_ARATH,A0A1P8BCW4_ARATH Calmodulin-binding protein 60 A,Calmodulin binding protein-like protein FUNCTION: Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes. {ECO:0000250|UniProtKB:F4K2R6}. 55621,34377,42989 Calmodulin-binding protein 60 A,Calmodulin binding protein-like protein nucleus [GO:0005634]; calmodulin binding [GO:0005516]; DNA binding [GO:0003677]; negative regulation of defense response to bacterium, incompatible interaction [GO:1902478]; regulation of transcription, DNA-templated [GO:0006355]; response to stress [GO:0006950]; transcription, DNA-templated [GO:0006351],calmodulin binding [GO:0005516]; response to stress [GO:0006950] TISSUE SPECIFICITY: Expressed in stems, flowers and root. {ECO:0000269|PubMed:11782485}. locus:2154134; AT5G62570 calmodulin-binding protein Os03g0823900 protein,Os03g0436300 protein,Os11g0379251 protein (Fragment),Os11g0346016 protein (Fragment) A0A0P0W533,A0A0P0VZX9,A0A0N7KSU0,A0A0P0Y229 A0A0P0W533_ORYSJ,A0A0P0VZX9_ORYSJ,A0A0N7KSU0_ORYSJ,A0A0P0Y229_ORYSJ Os03g0823900 OSNPB_030823900,Os03g0436300 OSNPB_030436300,Os11g0379251 OSNPB_110379251,Os11g0346016 OSNPB_110346016 ENOG411DZ2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os05g0560900 protein (Putative GA2-oxidase),Os05g0560900 protein Q688Y4,A0A0P0WQS3 Q688Y4_ORYSJ,A0A0P0WQS3_ORYSJ Os05g0560900 OJ1115_B06.9 OSNPB_050560900,Os05g0560900 OSNPB_050560900 ENOG411DZ2A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os08g0481100 protein B9G1G1 B9G1G1_ORYSJ Os08g0481100 OsJ_27693 OSNPB_080481100 ENOG411DZ2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine-rich receptor-like protein kinase Os01g0127700 protein A0A0P0UXF5 A0A0P0UXF5_ORYSJ Os01g0127700 OSNPB_010127700 ENOG411DZ2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0516200 protein (Protein kinase domain containing protein, expressed) (Putative receptor protein kinase),Os03g0113000 protein (Protein kinase domain containing protein, expressed) (cDNA clone:001-013-E01, full insert sequence) (cDNA clone:001-023-A08, full insert sequence) (cDNA clone:J023085P06, full insert sequence) Q94HZ8,Q8GZY0 Q94HZ8_ORYSJ,Q8GZY0_ORYSJ Os10g0516200 LOC_Os10g37190 OSJNBa0076F20.2 OSNPB_100516200,OSJNBa0090O10.2 LOC_Os03g02190 Os03g0113000 OsJ_09146 OSNPB_030113000 ENOG411DZ2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q69Y81 Q69Y81_ORYSJ Os06g0480000 Os06g0480000 OsJ_21365 OSNPB_060480000 P0618D11.21 ENOG411DZ2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0260000 protein,Os09g0261100 protein,Os01g0165800 protein Q0J346,Q6EP70,A0A0P0UZC1 Q0J346_ORYSJ,Q6EP70_ORYSJ,A0A0P0UZC1_ORYSJ Os09g0260000 OSNPB_090260000,Os09g0261100 Os09g0261100 B1077E10.9 OSNPB_090261100,Os01g0165800 OSNPB_010165800 ENOG411DZ2Z Q9SLA6,A8MQN8 Q9SLA6_ARATH,A8MQN8_ARATH At2g25570 (Binding protein) (Expressed protein) (Uncharacterized protein At2g25570),Binding protein 32410,22621 At2g25570 (Binding protein) (Expressed protein) (Uncharacterized protein At2g25570),Binding protein locus:2040130; AT2G25570 SEL1 Os02g0202600 protein (cDNA clone:J013150O18, full insert sequence) (cDNA clone:J023109C15, full insert sequence) (cDNA clone:J033069H18, full insert sequence) Q6ZHU4 Q6ZHU4_ORYSJ Os02g0202600 OJ1135_F06.7 OsJ_05803 OSNPB_020202600 ENOG411DZ2P STR4,TROL Q9M158,A0A1P8B8J7 STR4_ARATH,A0A1P8B8J7_ARATH Rhodanese-like domain-containing protein 4, chloroplastic (Protein THYLAKOID RHODANESE-LIKE) (Sulfurtransferase 4) (AtStr4),Thylakoid rhodanese-like protein DISRUPTION PHENOTYPE: Slight reduction in rosette size, yellowish inflorescences and siliques and small chloroplasts with irregular morphology and no starch grains. {ECO:0000269|PubMed:19682289}. Slow growth; Small rosette; Thick leaves; Incomplete penetrance of yellow inflorescences and siliques; Small chloroplasts with altered morphology-H. Fulgosi-2009 FUNCTION: Rhodanese domain-containing protein required for anchoring ferredoxin--NADP reductase to the thylakoid membranes and sustaining efficient linear electron flow (LEF). {ECO:0000269|PubMed:19682289}. 49387,54469 Rhodanese-like domain-containing protein 4, chloroplastic (Protein THYLAKOID RHODANESE-LIKE) (Sulfurtransferase 4) (AtStr4),Thylakoid rhodanese-like protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; chitin catabolic process [GO:0006032]; defense response to bacterium [GO:0042742]; photosynthetic electron transport in photosystem II [GO:0009772] TISSUE SPECIFICITY: Expressed in leaves and stems, and at lower levels in flowers and siliques (at protein level). {ECO:0000269|PubMed:19682289}. locus:2124998; AT4G01050 NA Os02g0257300 protein A0A0P0VH79 A0A0P0VH79_ORYSJ Os02g0257300 OSNPB_020257300 ENOG411DZ2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Di19 Protein DEHYDRATION-INDUCED 19 (OsDi19) Q688X9 DI191_ORYSJ DI19-1 DI19 Os05g0562200 LOC_Os05g48800 OJ1115_B06.15 OsJ_018755 OsJ_19542 ENOG411DZ2S PCMP-E9,AHG11 Q1PEU4,A0A1P8B0J3,A0A1P8B0F9,A0A1P8B0G8,A0A1P8B0G9 PP201_ARATH,A0A1P8B0J3_ARATH,A0A1P8B0F9_ARATH,A0A1P8B0G8_ARATH,A0A1P8B0G9_ARATH Pentatricopeptide repeat-containing protein At2g44880,Pentatricopeptide repeat (PPR-like) superfamily protein 63260,68383,68252,68645,68121 Pentatricopeptide repeat-containing protein At2g44880,Pentatricopeptide repeat (PPR-like) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2054966; AT2G44880 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DZ2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydrolase alpha beta fold family protein Hydrolase, alpha/beta fold family protein, expressed (Os03g0116300 protein) (cDNA, clone: J100028A19, full insert sequence) (cDNA, clone: J100047K06, full insert sequence),Hydrolase, alpha/beta fold family protein, putative, expressed (Os10g0521500 protein) (Putative alpha/beta hydrolase) (cDNA clone:001-203-A03, full insert sequence) Q10SN6,Q9FWB5 Q10SN6_ORYSJ,Q9FWB5_ORYSJ Os03g0116300 LOC_Os03g02514 OSNPB_030116300,Os10g0521500 LOC_Os10g37720 Os10g0521500 OSJNBb0018B10.25 OSJNBb0028C01.45 OSNPB_100521500 ENOG411DZ2W ndhA Q37165 NU1C_ARATH NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01350}. ARA:ATCG01100-MONOMER; 1.6.5.- 40021 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial respiratory chain complex I [GO:0005747]; oxidoreductase activity, acting on NAD(P)H [GO:0016651]; quinone binding [GO:0048038]; cellular respiration [GO:0045333]; photosynthesis [GO:0015979] locus:504954733; ATCG01100 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1) P12124 NU1C_ORYSJ ndhA Nip174 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01350}. ENOG411ED3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1442) NA NA NA NA NA NA NA ENOG411E2P7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AWPM-19-like membrane family protein Os01g0247900 protein (Putative ABA induced plasma membrane protein PM 19) (cDNA clone:002-155-G11, full insert sequence) Q5NAK9 Q5NAK9_ORYSJ Os01g0247900 OsJ_01096 OSJNBa0004G10.39 OSNPB_010247900 P0034C11.15 ENOG411E2P6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF506) Os01g0879600 protein A0A0P0VB70 A0A0P0VB70_ORYSJ Os01g0879600 OSNPB_010879600 ENOG411E2P1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os10g0560700 protein A0A0P0XXH6 A0A0P0XXH6_ORYSJ Os10g0560700 OSNPB_100560700 ENOG411E2P0 MDF20.8 Q9FM74 Q9FM74_ARATH At5g55640 (Na-translocating NADH-quinone reductase subunit A) (Uncharacterized protein MDF20.8) 16475 At5g55640 (Na-translocating NADH-quinone reductase subunit A) (Uncharacterized protein MDF20.8) locus:2162177; AT5G55640 NA Os03g0595200 protein (Fragment) A0A0N7KHL5 A0A0N7KHL5_ORYSJ Os03g0595200 OSNPB_030595200 ENOG411E2P2 GUN4 Q9LX31 GUN4C_ARATH Tetrapyrrole-binding protein, chloroplastic (Genomes uncoupled 4) Accumulate the same levels of chlorophyll as gun4-1.,Strong enhancements of the gun phenotype: Lhcb1*2-GUS expression in the double mutants was ~fivefold higher than the single mutants and was about 11-17% of that observed in nonphotobleached wild-type plants. The endogenous Lhcb1 mRNA levels were also derepressed synergistically in the double mutants.,The homozygous progeny is albino.,Express nuclear-encoded Lhcb and RbcS transcripts in the absence of chloroplast development.,Lower chlorophyll levels than wild type.,Whole plant:color:pale yellow. Chlorophyll biosynthesis:process:defective. magnesium-protoporphyrin biosynthesis:process:defective. Screen:Identified in a screen for plants that express LHCB proteins in the absence of functional chloroplasts.,Extremely pale under normal growth conditions.,Plants are very small and develop yellow or white tissue when grown under standard conditions. gun4-2 mutants produce a number of leaves and flowerlike structures after approximately 2 months on sucrose-containing media and are pale green in dim light. Dwarf; Albino or yellow-J. Chory-2003 FUNCTION: Regulates chlorophyll synthesis and plastid-to-nucleus signal transduction by binding both the product and the substrate of Mg-chelatase, an enzyme that produces magnesium-protoporphyrin IX (Mg-Proto). Activates also Mg-chelatase. Neither binds abscisic acid (ABA) nor is involved in ABA signaling. {ECO:0000269|PubMed:12574634, ECO:0000269|PubMed:23011401}. 29665 Tetrapyrrole-binding protein, chloroplastic (Genomes uncoupled 4) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; enzyme binding [GO:0019899]; tetrapyrrole binding [GO:0046906]; chlorophyll biosynthetic process [GO:0015995]; chloroplast-nucleus signaling pathway [GO:0010019]; positive regulation of catalytic activity [GO:0043085] locus:2081207; AT3G59400 tetrapyrrole-binding protein GUN4, putative (GUN4-like family protein, expressed) (Os11g0267000 protein) (cDNA clone:006-204-B07, full insert sequence) (cDNA clone:006-302-H05, full insert sequence) (cDNA clone:006-306-B02, full insert sequence) (cDNA clone:J023122C05, full insert sequence) Q53M04 Q53M04_ORYSJ LOC_Os11g16550 Os11g0267000 OsJ_33586 OSNPB_110267000 ENOG411E2P9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML15 (Calmodulin-like protein 15),Probable calcium-binding protein CML10 (Calmodulin-like protein 10) Q6L4D4,Q8RZB5 CML15_ORYSJ,CML10_ORYSJ CML15 Os05g0380900 LOC_Os05g31620 OSJNBa0088M05.6,CML10 Os01g0949500 LOC_Os01g72100 B1147A04.18 OsJ_04761 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E2P8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase F1 delta subunit family protein ATP synthase F1, delta subunit family protein, expressed (Os03g0736600 protein) Q84R40 Q84R40_ORYSJ OSJNBb0016H12.16 Os03g0736600 LOC_Os03g52660 OSNPB_030736600 ENOG411E2PG Q9ZUY4 Q9ZUY4_ARATH Expressed protein (Uncharacterized protein At2g27830) (Uncharacterized protein At2g27830; F15K20.7) 21129 Expressed protein (Uncharacterized protein At2g27830) (Uncharacterized protein At2g27830; F15K20.7) locus:2042006; AT2G27830 Inherit from KOG: Pentatricopeptide repeat-containing protein Os02g0527200 protein (cDNA clone:001-005-A09, full insert sequence),Os04g0405900 protein (Fragment) Q6H6Q9,Q0JDF9 Q6H6Q9_ORYSJ,Q0JDF9_ORYSJ Os02g0527200 Os02g0527200 OsJ_06975 OSNPB_020527200 P0458B05.21 P0475F05.1,Os04g0405900 Os04g0405900 OSNPB_040405900 ENOG411E2PF FIS1A Q9M1J1 FIS1A_ARATH Mitochondrial fission 1 protein A (FIS1 homolog A) (AtFIS1a) (Protein BIGYIN 1) DISRUPTION PHENOTYPE: Reduced plant growth. Increase in the size of mitochondria and decrease in the number of mitochondria per cell. {ECO:0000269|PubMed:16510519, ECO:0000269|PubMed:18785999, ECO:0000269|PubMed:19825601}. Semi-dwarf; Abnormal mitochondria and peroxisome morphology-J. Hu-2008 FUNCTION: Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes. {ECO:0000269|PubMed:16510519, ECO:0000269|PubMed:18785999, ECO:0000269|PubMed:19825601}. MISCELLANEOUS: Overexpression of FIS1A increases the fission of peroxisomes and mitochondria. {ECO:0000305|PubMed:19825601}. 18698 Mitochondrial fission 1 protein A (FIS1 homolog A) (AtFIS1a) (Protein BIGYIN 1) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; mitochondrial fission [GO:0000266]; mitochondrion organization [GO:0007005]; peroxisome fission [GO:0016559] locus:2080665; AT3G57090 fission 1 Mitochondrial fission 1 protein Q10L89 Q10L89_ORYSJ LOC_Os03g24060 Os03g0356484 OSNPB_030356484 FUNCTION: Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes. {ECO:0000256|PIRNR:PIRNR008835}. ENOG411E2PA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Os05g0171900 protein (cDNA clone:002-117-C06, full insert sequence) (cDNA clone:J023031G07, full insert sequence),Os01g0173600 protein,Os05g0171900 protein Q65XR4,Q94E60,A0A0P0WII9 Q65XR4_ORYSJ,Q94E60_ORYSJ,A0A0P0WII9_ORYSJ Os05g0171900 OsJ_17296 OSNPB_050171900 P0685E10.15,Os01g0173600 Os01g0173600 OSJNBa0089K24.11 OSNPB_010173600,Os05g0171900 OSNPB_050171900 ENOG411E2PC Q8L8B6 Q8L8B6_ARATH TOX high mobility group box protein, putative (DUF1635) (Uncharacterized protein At2g28690/T8O18.2) 26235 TOX high mobility group box protein, putative (DUF1635) (Uncharacterized protein At2g28690/T8O18.2) locus:2065511; AT2G28690 Protein of unknown function (DUF1635) NA NA NA NA NA NA NA ENOG411E2PN Q9M2U0 CSPLJ_ARATH CASP-like protein 4C1 (AtCASPL4C1) 21687 CASP-like protein 4C1 (AtCASPL4C1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:2099951; AT3G55390 CASP-like protein CASP-like protein 4C1 (OsCASPL4C1),CASP-like protein Q2QNE3,A0A0P0YBH1 CSPLP_ORYSJ,A0A0P0YBH1_ORYSJ Os12g0568700 LOC_Os12g38100,Os12g0568700 OSNPB_120568700 ENOG411E2PI Q9C7H3,Q9SKA2 Q9C7H3_ARATH,Q9SKA2_ARATH Late embryogenesis abundant domain-containing protein / LEA domain-containing protein (Uncharacterized protein F28P5.13),Late embryogenesis abundant protein (LEA) family protein (Similar to seed maturation protein PM27) 52704,42529 Late embryogenesis abundant domain-containing protein / LEA domain-containing protein (Uncharacterized protein F28P5.13),Late embryogenesis abundant protein (LEA) family protein (Similar to seed maturation protein PM27) integral component of membrane [GO:0016021]; pexophagosome [GO:1990457],integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2030347;,locus:2009507; AT1G72100,AT1G22600 Inherit from KOG: Transmembrane protein 205 Os04g0434400 protein C7J0Z6 C7J0Z6_ORYSJ Os04g0434400 Os04g0434400 OSNPB_040434400 ENOG411E2PH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2PK LSM1A Q945P8 LSM1A_ARATH Sm-like protein LSM1A (AtLSM1a) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants lsm1a and lsm1b show severe developmental alterations, such as delayed seed germination, reduced root length, epinastic, chlorotic and small cotyledons, small and serrated leaves, abnormal venation in cotyledons and leaves, dwarf plants with early flowering, short siliques with reduced seed number and small morphologically alterated seeds. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. FUNCTION: Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. LSM1A and LSM1B are essential for the formation of the cytoplasmic LSM1-LSM7 complex which regulates developmental gene expression by the decapping of specific development-related transcripts (PubMed:23221597, PubMed:23620288). Required for P-body formation during heat stress (PubMed:23221597). {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. R-ATH-430039; 14662 Sm-like protein LSM1A (AtLSM1a) Lsm1-7-Pat1 complex [GO:1990726]; mRNA cap binding complex [GO:0005845]; P-body [GO:0000932]; RNA binding [GO:0003723]; RNA cap binding [GO:0000339]; cold acclimation [GO:0009631]; deadenylation-dependent decapping of nuclear-transcribed mRNA [GO:0000290]; hyperosmotic salinity response [GO:0042538]; mRNA processing [GO:0006397]; response to water deprivation [GO:0009414]; RNA metabolic process [GO:0016070] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}. locus:2011246; AT1G19120 U6 snRNA-associated Sm-like protein Os04g0445800 protein Q0JCW8 Q0JCW8_ORYSJ Os04g0445800 Os04g0445800 OsJ_14946 OSNPB_040445800 ENOG411E2PU IKU1 O82170,Q9LPK0,A0A1P8AUC0,Q3EBM8 IKU1_ARATH,Q9LPK0_ARATH,A0A1P8AUC0_ARATH,Q3EBM8_ARATH Protein HAIKU1 (MPK3/6-targeted VQ-motif-containing protein 9) (VQ motif-containing protein 14) (AtVQ14),At1g32610 (F6N18.2) (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At1g32610),Hydroxyproline-rich glycoprotein family protein,VQ motif-containing protein DISRUPTION PHENOTYPE: Reduced seed size and early endosperm cellularization. {ECO:0000269|PubMed:12692325}. Reduced seed size Small seeds due to reduced endosperm growth (segregates in heterozygotes)-M. Luo-2010 FUNCTION: Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:12692325, PubMed:20545893). May function by binding and modulating the activity of WRKY10 transcription factor (PubMed:20545893). {ECO:0000269|PubMed:12692325, ECO:0000269|PubMed:20545893}. 44686,32361,28650,32695 Protein HAIKU1 (MPK3/6-targeted VQ-motif-containing protein 9) (VQ motif-containing protein 14) (AtVQ14),At1g32610 (F6N18.2) (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At1g32610),Hydroxyproline-rich glycoprotein family protein,VQ motif-containing protein polar nucleus [GO:0043078]; endosperm development [GO:0009960]; regulation of seed growth [GO:0080113] locus:2063419;,locus:2035544; AT2G35230,AT1G32610 VQ motif NA NA NA NA NA NA NA ENOG411E2PY DOF2.1 Q8LE43 DOF21_ARATH Dof zinc finger protein DOF2.1 (AtDOF2.1) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 31782 Dof zinc finger protein DOF2.1 (AtDOF2.1) nucleolus [GO:0005730]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2056588; AT2G28510 dof zinc finger protein NA NA NA NA NA NA NA ENOG411E2PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beach NA NA NA NA NA NA NA ENOG411E2PZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os01g0747800 protein (VQ motif-containing protein-like) (cDNA clone:J033023G10, full insert sequence) Q94J34 Q94J34_ORYSJ Os01g0747800 Os01g0747800 OsJ_03444 OSNPB_010747800 P0481E12.17 ENOG411EH8W YUP8H12.4 A0A1P8B0V8,Q9SKX9,O23035,Q1PEX8,Q9SKY1,A0A1P8AXU8,A8MS40 A0A1P8B0V8_ARATH,Q9SKX9_ARATH,O23035_ARATH,Q1PEX8_ARATH,Q9SKY1_ARATH,A0A1P8AXU8_ARATH,A8MS40_ARATH Cysteine-rich/transmembrane domain A-like protein,Cysteine-rich/transmembrane domain A-like protein (Expressed protein) (Uncharacterized protein At2g32210),Cysteine-rich TM module stress tolerance protein (Uncharacterized protein At1g05340) (YUP8H12.4 protein),Cysteine-rich/transmembrane domain A-like protein (Expressed protein) (Uncharacterized protein At2g32190) 6626,7337,7480,7800,7380,11961,7108 Cysteine-rich/transmembrane domain A-like protein,Cysteine-rich/transmembrane domain A-like protein (Expressed protein) (Uncharacterized protein At2g32210),Cysteine-rich TM module stress tolerance protein (Uncharacterized protein At1g05340) (YUP8H12.4 protein),Cysteine-rich/transmembrane domain A-like protein (Expressed protein) (Uncharacterized protein At2g32190) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006] locus:2045492;,locus:2207195;,locus:2045507;,locus:2045522; AT2G32210,AT1G05340,AT2G32200,AT2G32190 NA Os04g0615200 protein (Fragment) A0A0P0WER9 A0A0P0WER9_ORYSJ Os04g0615200 OSNPB_040615200 ENOG411EH8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative esterase NA NA NA NA NA NA NA ENOG411EH8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1070) NA NA NA NA NA NA NA ENOG411EH8T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0157400 protein Q5ZCC9 Q5ZCC9_ORYSJ Os01g0157400 OsJ_00445 OSNPB_010157400 P0011G08.38 ENOG411EH8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EH8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EH8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH8P Q9SL13 Q9SL13_ARATH At2g05540/T20G20.11 (Glycine-rich protein family) (Putative glycine-rich protein) 14093 At2g05540/T20G20.11 (Glycine-rich protein family) (Putative glycine-rich protein) locus:2058919; AT2G05540 Glycine rich protein family NA NA NA NA NA NA NA ENOG411EH8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH8Y F13M14.26 Q9CAE8 Q9CAE8_ARATH Plant self-incompatibility protein S1 family (Uncharacterized protein F13M14.26) 15825 Plant self-incompatibility protein S1 family (Uncharacterized protein F13M14.26) locus:2075875; AT3G10460 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EH8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-grasp domain NA NA NA NA NA NA NA ENOG411EH8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EH8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os11g0194100 protein) (Os11g0194600 protein),Expressed protein (Os11g0570400 protein) (cDNA clone:J023045F18, full insert sequence),Os11g0191500 protein,Os11g0194100 protein (Fragment) Q53LI0,Q2R2D0,Q53NI3,A0A0N7KSJ9 Q53LI0_ORYSJ,Q2R2D0_ORYSJ,Q53NI3_ORYSJ,A0A0N7KSJ9_ORYSJ Os11g0194600 LOC_Os11g08860 LOC_Os11g08930 Os11g0194100 Os11g0194600 OsJ_33255 OSNPB_110194600,LOC_Os11g36230 Os11g0570400 OsJ_34310 OSNPB_110570400,Os11g0191500 LOC_Os11g08680 OSNPB_110191500,Os11g0194100 OSNPB_110194100 ENOG411EH8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial regulatory helix-turn-helix protein lysR family NA NA NA NA NA NA NA ENOG411EH8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EH85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411EH84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cell differentiation family Rcd1-like NA NA NA NA NA NA NA ENOG411EA4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA4X O81305 PKSC_ARATH Type III polyketide synthase C (PKS-C) (EC 2.3.1.-) FUNCTION: Plant type III polyketide synthases (PKSs) that catalyzes the condensation of malonyl-CoA units with various CoA ester starter molecules to generate a diverse array of natural products including long-chain alkyl alpha-pyrones. {ECO:0000250|UniProtKB:O23674}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. {ECO:0000250|UniProtKB:Q9LKP7}. ARA:AT4G00040-MONOMER; 2.3.1.- 42415 Type III polyketide synthase C (PKS-C) (EC 2.3.1.-) endoplasmic reticulum [GO:0005783]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; flavonoid biosynthetic process [GO:0009813]; multicellular organism development [GO:0007275] locus:2126861; AT4G00040 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NA NA NA NA NA NA NA ENOG411EFP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heterokaryon incompatibility protein (HET) NA NA NA NA NA NA NA ENOG411EIMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nicastrin NA NA NA NA NA NA NA ENOG411EHQ1 Q1G3U1,Q1G3U0,F4I954 Q1G3U1_ARATH,Q1G3U0_ARATH,F4I954_ARATH Transmembrane protein,Uncharacterized protein 14396,9982,12525 Transmembrane protein,Uncharacterized protein integral component of membrane [GO:0016021] locus:4010713467;,locus:4515102574; AT1G24147,AT1G24148 NA NA NA NA NA NA NA NA ENOG411EHQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0419000 protein (Fragment),Os06g0170200 protein (Fragment) A0A0N7KTY2,A0A0P0WTG0 A0A0N7KTY2_ORYSJ,A0A0P0WTG0_ORYSJ Os12g0419000 OSNPB_120419000,Os06g0170200 OSNPB_060170200 ENOG411EHQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0246133 protein,Os11g0206150 protein (Fragment) A0A0P0Y0N5,A0A0P0Y054 A0A0P0Y0N5_ORYSJ,A0A0P0Y054_ORYSJ Os11g0246133 OSNPB_110246133,Os11g0206150 OSNPB_110206150 ENOG411EHQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dpy-30 motif NA NA NA NA NA NA NA ENOG411EHQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0157300 protein,Os02g0156700 protein,Os02g0154100 protein (Os02g0154300 protein),Os02g0155000 protein,Os02g0156500 protein Q0E3S4,Q0E3S9,C7IY50,Q0E3T7,Q0E3T1,A0A0P0VEZ8 Q0E3S4_ORYSJ,Q0E3S9_ORYSJ,C7IY50_ORYSJ,Q0E3T7_ORYSJ,Q0E3T1_ORYSJ,A0A0P0VEZ8_ORYSJ Os02g0157300 Os02g0157300 OSNPB_020157300,Os02g0156700 Os02g0156700 OSNPB_020156700,Os02g0154300 Os02g0154100 OSNPB_020154300,Os02g0155000 Os02g0155000 OSNPB_020155000,Os02g0156500 Os02g0156500 OSNPB_020156500,Os02g0157300 OSNPB_020157300 ENOG411EHQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411EHQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acid synthase-like NA NA NA NA NA NA NA ENOG411EJGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosynthetic reaction centre protein NA NA NA NA NA NA NA ENOG411EJGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated Os06g0171400 protein A0A0P0WSY3 A0A0P0WSY3_ORYSJ Os06g0171400 OSNPB_060171400 ENOG411EJGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0446700 protein A0A0P0WAN5 A0A0P0WAN5_ORYSJ Os04g0446700 OSNPB_040446700 ENOG411EJG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH NA NA NA NA NA NA NA ENOG411EJG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHROMO NA NA NA NA NA NA NA ENOG411EJG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0540900 protein (cDNA clone:002-175-G06, full insert sequence),Os09g0515550 protein (Fragment) Q6ZIU3,A0A0P0XPC8 Q6ZIU3_ORYSJ,A0A0P0XPC8_ORYSJ Os08g0540900 OJ1211_G06.10 OSNPB_080540900,Os09g0515550 OSNPB_090515550 ENOG411EJG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Ribosomal_S3_N NA NA NA NA NA NA NA ENOG411EJG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: replication protein DNA binding protein-like (Os01g0390300 protein) (cDNA clone:J013132G10, full insert sequence) (cDNA clone:J033116P19, full insert sequence),Os07g0642100 protein Q5VNJ1,A0A0P0X9M2 Q5VNJ1_ORYSJ,A0A0P0X9M2_ORYSJ OJ1123_G09.26-1 Os01g0390300 OSNPB_010390300,Os07g0642100 OSNPB_070642100 ENOG411EJG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like NA NA NA NA NA NA NA ENOG411DVS8 Q9STL8,F4JDY4,F4JDY2 UFSP_ARATH,F4JDY4_ARATH,F4JDY2_ARATH Probable Ufm1-specific protease (UfSP) (EC 3.4.22.-),Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 FUNCTION: Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, a ubiquitin-like modifier protein bound to a number of target proteins. {ECO:0000250}. 3.4.22.- 71466,70875,72805 Probable Ufm1-specific protease (UfSP) (EC 3.4.22.-),Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 UFM1 hydrolase activity [GO:0071567] locus:504955635; AT3G48380 UFM1-specific Probable Ufm1-specific protease (UfSP) (EC 3.4.22.-) Q0INW1 UFSP_ORYSJ Os12g0285500 LOC_Os12g18760 FUNCTION: Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ufm-1, a ubiquitin-like modifier protein bound to a number of target proteins. {ECO:0000250}. ENOG411DVSY SUS3,SUS4,SUS1 Q9M111,Q9LXL5,P49040 SUS3_ARATH,SUS4_ARATH,SUSY1_ARATH Sucrose synthase 3 (AtSUS3) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 3),Sucrose synthase 4 (AtSUS4) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 4),Sucrose synthase 1 (AtSUS1) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 1) DISRUPTION PHENOTYPE: No visible phenotype. Diminution of the starch content of developing seeds and increased lipid accumulation early during seed development. {ECO:0000269|PubMed:17257168, ECO:0000269|PubMed:20559653}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17257168}. Activity of SUS was reduced by about one-third in roots of the double mutant relative to Col-0 but otherwise the mutant was indistinguishable from Col-0.,When grown in soil or hydroponically the double mutant line was not obviously different from wild-type controls.,No visible phenotype.,The amounts of glucose fructose sucrose cellulose (roots) and starch in the mutant were not statistically significantly different from those of the equivalent wild-type lines grown under the same conditions at the same time.,The activity of SUS was reduced to 10% of wild-type levels in leaves of the mutant and was undetectable (reduced to less than 10% of wild-type levels) in roots. The activity of invertase was unaffected in roots of this mutant but in leaves neutral invertase activity was elevated by about 40%.,The double mutant line was much more severely affected by flooding. After the 4 days of flooding root weight had increased by only 44% (compared to 72% for wild type) and there was not statistically significant gain in root weight in the 3 days following flooding. At the end of the 7-day period the flooding treatment had reduced the gain in root weight by 71% relative to unflooded control plants (compared to 33% for wild type).,The sugar content of leaves was substantially higher than that of the wild-type control. This was most pronounced at the end of the night when glucose and fructose were almost ninefold higher in mutant than wild-type leaves and sucrose was more than twofold higher.,When grown in soil the double mutant line was not obviously different from wild-type controls. However when grown hydroponically the mutants grew considerably more slowly. Elevated sucrose levels; Low fructose and starch levels; No other phenotypes detected-A. Tiessen-2010 FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. Modulates metabolic homeostasis and direct carbon towards starch synthesis in developing seeds. {ECO:0000269|PubMed:20559653}.,FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000250}.,FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000269|PubMed:21865170}. MetaCyc:AT4G02280-MONOMER;,MetaCyc:AT3G43190-MONOMER;,ARA:AT5G20830-MONOMER;MetaCyc:AT5G20830-MONOMER; 2.4.1.13; 2.4.1.13 92002,93003,92998 Sucrose synthase 3 (AtSUS3) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 3),Sucrose synthase 4 (AtSUS4) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 4),Sucrose synthase 1 (AtSUS1) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 1) sucrose synthase activity [GO:0016157]; response to mannitol [GO:0010555]; response to water deprivation [GO:0009414]; seed maturation [GO:0010431]; starch metabolic process [GO:0005982]; sucrose metabolic process [GO:0005985],cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; sucrose synthase activity [GO:0016157]; response to hypoxia [GO:0001666]; sucrose metabolic process [GO:0005985],cytosol [GO:0005829]; plasmodesma [GO:0009506]; sucrose synthase activity [GO:0016157]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to flooding [GO:0009413]; response to glucose [GO:0009749]; response to hypoxia [GO:0001666]; response to mannitol [GO:0010555]; response to osmotic stress [GO:0006970]; response to sorbitol [GO:0072708]; response to sucrose [GO:0009744]; response to water deprivation [GO:0009414]; sucrose metabolic process [GO:0005985] DEVELOPMENTAL STAGE: Highly expressed in late-maturing seeds and in geminating seeds (at the protein level). {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168}. TISSUE SPECIFICITY: Detected in the whole plant with highest expression in developing siliques, vasculature of cotyledons and stomatal guard cells. Also detected throughout the mature parts of the root but not in the expanding zone. {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168, ECO:0000269|PubMed:18635527}.,TISSUE SPECIFICITY: Detected in the whole plant with highest expression in young rosette leaves and roots. {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168, ECO:0000269|PubMed:18635527}.,TISSUE SPECIFICITY: Expressed in the phloem of leaves and in roots. Detected in the whole plant but more precisely confined to the vasculature in cotyledons, mature leaves and siliques. {ECO:0000269|PubMed:14739263, ECO:0000269|PubMed:17257168, ECO:0000269|PubMed:18635527, ECO:0000269|PubMed:8220487}. locus:2137829;,locus:2084756;,locus:2180489; AT4G02280,AT3G43190,AT5G20830 Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways (By similarity) Sucrose synthase 2 (OsSUS2) (EC 2.4.1.13) (Sucrose synthase 1) (RSs1) (Sucrose-UDP glucosyltransferase 2),Sucrose synthase 4 (OsSUS4) (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 4),Sucrose synthase (EC 2.4.1.13) (Fragment),Os03g0340500 protein (Fragment) P30298,Q10LP5,A0A0P0WTZ1,A0A0P0VXA4 SUS2_ORYSJ,SUS4_ORYSJ,A0A0P0WTZ1_ORYSJ,A0A0P0VXA4_ORYSJ SUS2 RSS1 RSUS2 Os06g0194900 LOC_Os06g09450 P0648E08.22,SUS4 Os03g0340500 LOC_Os03g22120 OsJ_10783,Os06g0194900 OSNPB_060194900,Os03g0340500 OSNPB_030340500 FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways (By similarity). Functions in developing seeds by supplying substrates for the biosynthesis of storage products (PubMed:11910009). {ECO:0000250, ECO:0000269|PubMed:11910009}.,FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000250}.,FUNCTION: Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. {ECO:0000256|RuleBase:RU280817}. ENOG411DVSW A0A1P8BHF5,Q9LJH2,A0A1P8BHF6,F4KAV2,F4KAV1,F4JFR7 A0A1P8BHF5_ARATH,Q9LJH2_ARATH,A0A1P8BHF6_ARATH,F4KAV2_ARATH,F4KAV1_ARATH,F4JFR7_ARATH 2-oxoglutarate-dependent dioxygenase family protein 34603,49786,40944,49486,43535,53087 2-oxoglutarate-dependent dioxygenase family protein dioxygenase activity [GO:0051213]; DNA repair [GO:0006281],dioxygenase activity [GO:0051213]; ferrous iron binding [GO:0008198]; DNA repair [GO:0006281] locus:2087452;,locus:2181012;,locus:2087497; AT3G14160,AT5G01780,AT3G14140 Inherit from KOG: AlkB alkylation repair homolog 1 (E. coli) Os03g0816500 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed) Q10BI5 Q10BI5_ORYSJ Os03g0816500 LOC_Os03g60190 OSNPB_030816500 ENOG411EIZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EF63 WRKY45 Q9S763 WRK45_ARATH Probable WRKY transcription factor 45 (AT.I.24-4) (WRKY DNA-binding protein 45) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 17225 Probable WRKY transcription factor 45 (AT.I.24-4) (WRKY DNA-binding protein 45) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]; phosphate ion transport [GO:0006817]; transcription, DNA-templated [GO:0006351] locus:2078703; AT3G01970 WRKY NA NA NA NA NA NA NA ENOG411EF67 A0A1P8B647,F4JHR1,A0A1P8B648 A0A1P8B647_ARATH,F4JHR1_ARATH,A0A1P8B648_ARATH RING/U-box superfamily protein 28556,26396,27810 RING/U-box superfamily protein U2-type spliceosomal complex [GO:0005684]; mRNA cis splicing, via spliceosome [GO:0045292]; snoRNA splicing [GO:0034247] locus:505006423; AT4G01023 RING NA NA NA NA NA NA NA ENOG411EF66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os06g0725700 protein,Os08g0501400 protein Q5Z976,A3BUK1 Q5Z976_ORYSJ,A3BUK1_ORYSJ Os06g0725700 Os06g0725700 OSNPB_060725700 P0548E04.18,Os08g0501400 OsJ_27839 OSNPB_080501400 ENOG411EF65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EF6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1635) NA NA NA NA NA NA NA ENOG411EF6A Q3EAE6 Q3EAE6_ARATH RING/U-box superfamily protein 14259 RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:505006414; AT4G00305 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EF6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein NA NA NA NA NA NA NA ENOG411EF6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N2N2-dimethylguanosine tRNA methyltransferase NA NA NA NA NA NA NA ENOG411EF6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0204800 protein A0A0P0VUI3 A0A0P0VUI3_ORYSJ Os03g0204800 OSNPB_030204800 ENOG411EF6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EF6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA p25-alpha NA NA NA NA NA NA NA ENOG411EF6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein (Fragment) A0A0P0XL32 A0A0P0XL32_ORYSJ Os09g0383000 OSNPB_090383000 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EI5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0489200 protein A0A0P0WBP8 A0A0P0WBP8_ORYSJ Os04g0489200 OSNPB_040489200 ENOG411EI5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EI5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EI5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0844800 protein) (cDNA clone:J023114B14, full insert sequence) Q75LC3 Q75LC3_ORYSJ OSJNBa0032G11.19 LOC_Os03g62760 Os03g0844800 OsJ_13342 OSNPB_030844800 ENOG411EI5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Protein kinase AMP-activated beta NA NA NA NA NA NA NA ENOG411EI5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0212801 protein (Fragment),Os11g0212700 protein A0A0P0Y0B4,A0A0P0Y068 A0A0P0Y0B4_ORYSJ,A0A0P0Y068_ORYSJ Os11g0212801 OSNPB_110212801,Os11g0212700 OSNPB_110212700 ENOG411EI5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0639000 protein B9FCS0 B9FCS0_ORYSJ Os04g0639000 Os04g0639000 OsJ_16340 OSNPB_040639000 ENOG411EI5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain NA NA NA NA NA NA NA ENOG411EI55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI57 O80884 O80884_ARATH F-box associated ubiquitination effector family protein (Uncharacterized protein At2g32470) (Uncharacterized protein At2g32470/T26B15.3) 33451 F-box associated ubiquitination effector family protein (Uncharacterized protein At2g32470) (Uncharacterized protein At2g32470/T26B15.3) locus:2060290; AT2G32470 F-box associated domain NA NA NA NA NA NA NA ENOG411EI56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DV95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione NA NA NA NA NA NA NA ENOG411DV94 AHL21,AHL23 O82166,O23620 AHL21_ARATH,AHL23_ARATH AT-hook motif nuclear-localized protein 21 (Protein GIANT KILLER),AT-hook motif nuclear-localized protein 23 DISRUPTION PHENOTYPE: Reproductive defects. {ECO:0000269|PubMed:19956801}. Most of the flowers from gik homozygous mutants appeared normal without any gametophytic defects but a small number of flowers (22 of 800) showed various degrees of defects in stamen and carpel development.Stamen development was impaired which resulted in delayed dehiscence or indehiscence of anthers. In some cases the filaments of the stamens were branched and had ectopic anther formationand anthers were partially transformed into petal-like structures FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). Binds to the MARs present in the ETTIN (ETT) promoter leading to a negative regulation of its gene expression. Functions as a molecular node downstream of the homeotic protein AGAMOUS (AG), regulating patterning and differentiation of reproductive organs. Acts as a chromatin remodeling factor that modifies the architecture of ETTIN (ETT) chromatin by modulating H3 methylation leading to the regulation of ETT expression. Seems to be involved in the regulation of a set of reproductives genes including CRABS CLAW (CRC), JAGGED (JAG) and KNUCKLES (KNU). {ECO:0000269|PubMed:19956801}.,FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. MISCELLANEOUS: Overexpression of AHL21 results in reproductive defects such as excessive outgrowth of stigmatic tissues, short valves, and excessive proliferation of a carpelloid organ at the lateral side of a pistil with exposed ovules. {ECO:0000269|PubMed:19956801}. 29144,29724 AT-hook motif nuclear-localized protein 21 (Protein GIANT KILLER),AT-hook motif nuclear-localized protein 23 nucleoplasm [GO:0005654]; AT DNA binding [GO:0003680]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; carpel development [GO:0048440]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; AT DNA binding [GO:0003680]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed throughout floral primordia at stages 1 through 4. At stage 6 and later, expression is confined to reproductive organ primordia. At stages later than stage 10, localizes in developing ovules and anther locules. {ECO:0000269|PubMed:19956801}. TISSUE SPECIFICITY: Preferentially expressed in roots, but also in flowers and leaves. Detected in the inflorescence meristem, floral primordia and developing reproductive organs. {ECO:0000269|PubMed:19956801}. locus:2063469;,locus:2129490; AT2G35270,AT4G17800 DNA-binding protein ESCAROLA-like AT-hook motif nuclear-localized protein Q7XLZ3,Q84UQ4 Q7XLZ3_ORYSJ,Q84UQ4_ORYSJ Os04g0590200 OSJNBa0086O06.16 OSNPB_040590200,P0672D01.108 P0498E12.125 Os08g0159700 OSNPB_080159700 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000256|PIRNR:PIRNR016021}. ENOG411DV97 ARP1 Q9M1S3,F4JE21,A0A1I9LRF1 ARP1_ARATH,F4JE21_ARATH,A0A1I9LRF1_ARATH Probable RNA-binding protein ARP1 (ABA-regulated RNA-binding protein 1),RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seeds have decreased germination rate in presence of abscisic acid (ABA) or salt, compared to wild-type. {ECO:0000269|PubMed:23040517}. FUNCTION: Probable RNA-binding protein involved in the regulation of abscisic acid (ABA) response during seed germination. May regulate transcript levels of several germination-responsive genes under ABA. {ECO:0000269|PubMed:23040517}. 28857,24289,28795 Probable RNA-binding protein ARP1 (ABA-regulated RNA-binding protein 1),RNA-binding (RRM/RBD/RNP motifs) family protein nucleus [GO:0005634]; mRNA binding [GO:0003729]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in vasculature of leaves, roots and siliques. {ECO:0000269|PubMed:23040517}. locus:2102435; AT3G54770 RNA recognition motif containing protein Os03g0286500 protein (RNA recognition motif family protein, expressed) Q10N14 Q10N14_ORYSJ LOC_Os03g17760 Os03g0286500 OSNPB_030286500 ENOG411DV96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0164600 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J033136E21, full insert sequence) Q6H6V8 Q6H6V8_ORYSJ Os02g0164600 Os02g0164600 OJ1661_C12.21 OsJ_05503 OSJNBa0023I17.4 OSNPB_020164600 ENOG411DV91 O22769 NDUV2_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT4G02580-MONOMER;MetaCyc:AT4G02580-MONOMER; R-ATH-6799198; 1.6.5.3; 1.6.99.3 28389 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; zinc ion binding [GO:0008270]; mitochondrial electron transport, NADH to ubiquinone [GO:0006120]; response to oxidative stress [GO:0006979] locus:2132387; AT4G02580 NADH dehydrogenase (ubiquinone) flavoprotein 2 Os05g0509200 protein (Putative NADH-ubiquinone oxidoreductase) (cDNA clone:006-311-E10, full insert sequence) (cDNA clone:J013114B12, full insert sequence) Q6L4W7 Q6L4W7_ORYSJ Os05g0509200 OSJNBb0108E17.13 OSNPB_050509200 ENOG411DV90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase NA NA NA NA NA NA NA ENOG411DV93 CXE18 Q9LT10 CXE18_ARATH Probable carboxylesterase 18 (AtCXE18) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT5G23530-MONOMER; 3.1.1.1 37715 Probable carboxylesterase 18 (AtCXE18) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; catabolic process [GO:0009056]; pollen tube growth [GO:0009860] TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2171681; AT5G23530 carboxylesterase 18-like Os06g0306600 protein (Putative esterase) (cDNA clone:001-206-H11, full insert sequence),Expressed protein (Os11g0240600 protein) (cDNA clone:001-021-G12, full insert sequence) (prMC3, putative, expressed),Os07g0643400 protein (Putative esterase) (cDNA clone:006-204-B04, full insert sequence) (cDNA clone:006-310-B02, full insert sequence),Os11g0239500 protein (Os11g0239600 protein) (cDNA clone:J013022N12, full insert sequence) (prMC3, putative, expressed),Os11g0240600 protein (Fragment) Q5Z4C9,Q53M20,Q8H5P5,Q53KT2,A0A0P0Y0U8 Q5Z4C9_ORYSJ,Q53M20_ORYSJ,Q8H5P5_ORYSJ,Q53KT2_ORYSJ,A0A0P0Y0U8_ORYSJ Os06g0306600 Os06g0306600 B1386G10.30 OSNPB_060306600,LOC_Os11g13670 Os11g0240600 OSNPB_110240600,OJ1003_C06.126 Os07g0643400 OSNPB_070643400,Os11g0239500 LOC_Os11g13570 Os11g0239600 OsJ_33483 OSNPB_110239500,Os11g0240600 OSNPB_110240600 ENOG411DV92 T21B14.22 Q9FG04,Q9LHL8 Q9FG04_ARATH,Q9LHL8_ARATH Calcium load-activated calcium channel (CLAC channel) FUNCTION: Calcium-selective channel required to prevent calcium stores from overfilling. {ECO:0000256|PIRNR:PIRNR023322}. 21417,21532 Calcium load-activated calcium channel (CLAC channel) integral component of endoplasmic reticulum membrane [GO:0030176]; calcium channel activity [GO:0005262]; endoplasmic reticulum calcium ion homeostasis [GO:0032469],Golgi apparatus [GO:0005794]; integral component of endoplasmic reticulum membrane [GO:0030176]; calcium channel activity [GO:0005262]; endoplasmic reticulum calcium ion homeostasis [GO:0032469] locus:2144173;,locus:2088634; AT5G06660,AT3G12030 transmembrane and coiled-coil Calcium load-activated calcium channel (CLAC channel),Os08g0111000 protein Q6ASU6,A0A0N7KP59 Q6ASU6_ORYSJ,A0A0N7KP59_ORYSJ B1377B10.21 LOC_Os03g51160 Os03g0721400 OsJ_12385 OSNPB_030721400,Os08g0111000 OSNPB_080111000 FUNCTION: Calcium-selective channel required to prevent calcium stores from overfilling. {ECO:0000256|PIRNR:PIRNR023322}. ENOG411DV99 MLS Q9LZC3 MASY_ARATH Malate synthase (EC 2.3.3.9) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the frequency of mutant seedlings to establish into plantlets with true leaves is decreased under short day conditions. {ECO:0000269|PubMed:15272001}. Mutant seedlings can be rescued by the addition of exogenous sucrose in all conditions.,Mutants have only a slightly stunted phenotype when grown in the absence of exogenous sugar in the light. The phenotype is more obvious in the dark where hypocotyl elongation is inhibited and little root development takes place.,The establishment frequency of the mutant seedlings is similar to wild type levels and only becomes compromised when seedlings are grown in short days. Slightly slower seedling growth-S. Smith-2004 FUNCTION: Does not seem to be essential for lipid utilization and gluconeogenesis in seedlings. {ECO:0000303|PubMed:15272001}. PATHWAY: Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. {ECO:0000255|RuleBase:RU000555}. MetaCyc:AT5G03860-MONOMER; Microbial metabolism in diverse environments (01120),Pyruvate metabolism (00620),Glyoxylate and dicarboxylate metabolism (00630),Metabolic pathways (01100) 2.3.3.9 63887 Malate synthase (EC 2.3.3.9) cytoplasm [GO:0005737]; glyoxysome [GO:0009514]; malate synthase activity [GO:0004474]; glyoxylate cycle [GO:0006097]; tricarboxylic acid cycle [GO:0006099] DEVELOPMENTAL STAGE: Expressed from 1 to 5 days after seed imbibition (at protein level). {ECO:0000269|PubMed:19246395}. locus:2150625; AT5G03860 malate synthase Malate synthase (EC 2.3.3.9) Q7XUG1 MASY_ORYSJ MS Os04g0486950 LOC_Os04g40990 OJ991113_30.4 ENOG411DV98 Q94JV1 Q94JV1_ARATH Appr-1-p processing enzyme family protein (At1g69340/F10D13.28) 63305 Appr-1-p processing enzyme family protein (At1g69340/F10D13.28) locus:2007206; AT1G69340 protein GDAP2 homolog Appr-1-p processing enzyme family protein, putative, expressed (Os10g0444400 protein) (cDNA clone:J023088J18, full insert sequence),Os03g0151100 protein Q7XDZ9,Q0DV43 Q7XDZ9_ORYSJ,Q0DV43_ORYSJ Os10g0444400 LOC_Os10g30750 OsJ_31683 OSNPB_100444400,Os03g0151100 OSNPB_030151100 ENOG411DV9E OBE2,OBE1 Q9LUB7,Q9S736,A0A1I9LQN5 OBE2_ARATH,OBE1_ARATH,A0A1I9LQN5_ARATH Protein OBERON 2 (Potyvirus VPg-interacting protein 1),Protein OBERON 1 (Potyvirus VPg-interacting protein 2),Potyvirus VPg interacting protein (DUF1423) DISRUPTION PHENOTYPE: No visible phenotype. When associated with OBE1 disruption, plants exhibit premature termination of the shoot meristem and impaired root apical meristem establishment, leading to a diminutive phenotype characterized by an absence of roots and defective development of the vasculature. {ECO:0000269|PubMed:18403411, ECO:0000269|PubMed:19392692}.,DISRUPTION PHENOTYPE: No visible phenotype. When associated with OBE2 disruption, plants exhibit premature termination of the shoot meristem and impaired root apical meristem establishment, leading to a diminutive phenotype characterized by an absence of roots and defective development of the vasculature. {ECO:0000269|PubMed:18403411, ECO:0000269|PubMed:19392692}. Premature termination and loss of the shoot apical meristem. Failure to establish or maintain the root apical meristem. Aberrant embryonic development.,absence of roots and defective development of the vasculature.,No visible phenotype. FUNCTION: Together with OBE1, required for the maintenance and/or establishment of both the shoot and root meristems, probably by controlling the expression of the meristem genes such as WUS, PLT1 and PLT2 and of genes required for auxin responses. Promotes cell meristematic activity via the WUSCHEL-CLAVATA pathway. Involved in the development of the basal pole and in auxin-mediated root and vascular development in the embryo. Confers sensitivity to turnip mosaic virus (TuMV) probably by promoting viral movement and multiplication via interaction with TuMV VPg. {ECO:0000269|PubMed:18403411, ECO:0000269|PubMed:19392692}.,FUNCTION: Together with OBE2, required for the maintenance and/or establishment of both the shoot and root meristems, probably by controlling the expression of the meristem genes such as WUS, PLT1 and PLT2 and of genes required for auxin responses. Promotes cell meristematic activity via the WUSCHEL-CLAVATA pathway. Involved in the development of the basal pole and in auxin-mediated root and vascular development in the embryo. Confers sensitivity to turnip mosaic virus (TuMV) probably by promoting viral movement and multiplication via interaction with TuMV VPg. {ECO:0000269|PubMed:18403411, ECO:0000269|PubMed:19392692}. 65084,64159,65575 Protein OBERON 2 (Potyvirus VPg-interacting protein 1),Protein OBERON 1 (Potyvirus VPg-interacting protein 2),Potyvirus VPg interacting protein (DUF1423) nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; embryo development ending in seed dormancy [GO:0009793]; maintenance of root meristem identity [GO:0010078]; maintenance of shoot apical meristem identity [GO:0010492]; primary root development [GO:0080022]; regulation of gene expression [GO:0010468]; root meristem specification [GO:0010071]; transport of virus in host, cell to cell [GO:0046740],nucleus [GO:0005634]; plastid [GO:0009536]; metal ion binding [GO:0046872]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; embryo development ending in seed dormancy [GO:0009793]; maintenance of root meristem identity [GO:0010078]; maintenance of shoot apical meristem identity [GO:0010492]; primary root development [GO:0080022]; regulation of defense response [GO:0031347]; regulation of gene expression [GO:0010468]; root meristem specification [GO:0010071]; transport of virus in host, cell to cell [GO:0046740] DEVELOPMENTAL STAGE: First observed in the embryo proper at the four-cell stage. Later expressed throughout the embryo from the eight-cell to the bent-cotyledon stages. Until the torpedo stage of development, mostly concentrated at the root pole. Hardly detected in the suspensor. Present in seedling roots. In mature and fully differentiated young roots, restricted to root tips. {ECO:0000269|PubMed:18403411, ECO:0000269|PubMed:19392692}.,DEVELOPMENTAL STAGE: First observed in the embryo proper at the four-cell stage. Later expressed throughout the embryo from the eight-cell to the bent-cotyledon stages. Until the torpedo stage of development, mostly concentrated at the root pole. At the torpedo stage, strongest levels in the columella and lateral root cap. Hardly detected in the suspensor. Present in seedling roots. In mature and fully differentiated young roots, accumulates from the root cap to the emerging root hair zone. {ECO:0000269|PubMed:18403411, ECO:0000269|PubMed:19392692}. TISSUE SPECIFICITY: Expressed in roots, seedlings, stems, leaves, flowers and siliques, especially in the vasculature. {ECO:0000269|PubMed:18403411, ECO:0000269|PubMed:19392692}. locus:2164713;,locus:2077362; AT5G48160,AT3G07780 OBERON-like protein-like Os12g0514400 protein (Potyvirus VPg interacting protein, putative, expressed) Q2QPX3 Q2QPX3_ORYSJ Os12g0514400 LOC_Os12g32980 OsJ_36276 OSNPB_120514400 ENOG411DV9D HDA18,HDA5,MAF19.6,HDA05 Q8LRK8,Q8RX28,Q9FNQ9,F4K1Z5 HDA18_ARATH,HDA5_ARATH,Q9FNQ9_ARATH,F4K1Z5_ARATH Histone deacetylase 18 (EC 3.5.1.98),Histone deacetylase 5 (EC 3.5.1.98),Histone deacetylase-related / HD-like protein,Histone deacetylase (EC 3.5.1.98) Increased root hair density. Increased root hair density; Abnormal root epidermal cell patterning-S. Bai-2005 FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for appropriate cellular patterning in the root epidermis. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250, ECO:0000269|PubMed:16176989}.,FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250, ECO:0000269|PubMed:16176989}. MISCELLANEOUS: HDA5, a tandem duplication of HDA18, is not required for the cellular patterning in the root epidermis.,MISCELLANEOUS: Unlike its tandem duplication HDA18, HDA5 is not required for the cellular patterning in the root epidermis. R-ATH-3371511;R-ATH-5617833; 3.5.1.98 76634,72723,27936,73107 Histone deacetylase 18 (EC 3.5.1.98),Histone deacetylase 5 (EC 3.5.1.98),Histone deacetylase-related / HD-like protein,Histone deacetylase (EC 3.5.1.98) cytoplasm [GO:0005737]; nucleus [GO:0005634]; histone deacetylase activity [GO:0004407]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; chromatin remodeling [GO:0006338]; regulation of epidermal cell differentiation [GO:0045604]; regulation of transcription, DNA-templated [GO:0006355]; root epidermal cell differentiation [GO:0010053]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2159461;,locus:2159431;,locus:2159446; AT5G61070,AT5G61060,AT5G61050 Histone deacetylase Histone deacetylase (EC 3.5.1.98) Q0D4V4 Q0D4V4_ORYSJ Os07g0602200 Os07g0602200 OsJ_25020 OSNPB_070602200 ENOG411DV9G WLIM1 Q94JX5,A0A1P8AT46 WLIM1_ARATH,A0A1P8AT46_ARATH LIM domain-containing protein WLIM1 (Widely-expressed LIM protein 1) (AtWLIM1),GATA type zinc finger transcription factor family protein FUNCTION: Binds to actin filaments and promotes cross-linking into thick bundles. Has an actin-stabilizing activity. The actin regulatory activities are not regulated by pH and [Ca(2+)]. {ECO:0000269|PubMed:20817848}. MISCELLANEOUS: Cross-links actin with a constant of dissociation of 0.4 uM. {ECO:0000269|PubMed:20817848}. 21040,16296 LIM domain-containing protein WLIM1 (Widely-expressed LIM protein 1) (AtWLIM1),GATA type zinc finger transcription factor family protein cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; actin filament binding [GO:0051015]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; actin filament bundle assembly [GO:0051017],metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Not detected in pollen. {ECO:0000269|PubMed:11085265, ECO:0000269|PubMed:20817848}. locus:2012798; AT1G10200 Transcription factor NA NA NA NA NA NA NA ENOG411DV9A CCP1 B9DGC0,O64691 B9DGC0_ARATH,O64691_ARATH AT2G34560 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein),AT2G34560 protein (At2g34560) (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Putative katanin) 44003,42873 AT2G34560 protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein),AT2G34560 protein (At2g34560) (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Putative katanin) nucleus [GO:0005634]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2062274; AT2G34560 Katanin p60 ATPase-containing subunit Katanin (Os01g0757400 protein),Os01g0673500 protein (Vacuolar protein sorting factor 4B-like),Os01g0673500 protein,Os01g0673500 protein (Fragment) Q7XXR9,Q5QMP6,Q0JKI1,A0A0P0V6I3 Q7XXR9_ORYSJ,Q5QMP6_ORYSJ,Q0JKI1_ORYSJ,A0A0P0V6I3_ORYSJ Os01g0757400 OJ1414_E05.21 OSNPB_010757400,P0007F06.31-1 Os01g0673500 P0485G01.21-1 OsJ_02974 OSNPB_010673500,Os01g0673500 Os01g0673500 OSNPB_010673500,Os01g0673500 OSNPB_010673500 ENOG411DV9C KCS19 Q9LZ72 KCS19_ARATH 3-ketoacyl-CoA synthase 19 (KCS-19) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 19) (VLCFA condensing enzyme 19) PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT5G04530-MONOMER; 2.3.1.199 52613 3-ketoacyl-CoA synthase 19 (KCS-19) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 19) (VLCFA condensing enzyme 19) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:18465198}. locus:2184387; AT5G04530 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411DV9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0418700 protein),Expressed protein (Expressed protein (Alternative splicing product)) (Os03g0418700 protein) (cDNA clone:J033066F10, full insert sequence),Os07g0603300 protein (Fragment) Q10JI7,Q75GD8,A0A0P0X8U0 Q10JI7_ORYSJ,Q75GD8_ORYSJ,A0A0P0X8U0_ORYSJ Os03g0418700 LOC_Os03g30530 OSNPB_030418700,OSJNBb0028K20.10 LOC_Os03g30530 Os03g0418700 OsJ_11283 OSNPB_030418700,Os07g0603300 OSNPB_070603300 ENOG411DV9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carboxylesterase activity Probable esterase PIR7A (EC 3.1.-.-) Q0JG98 PIR7A_ORYSJ PIR7A Os01g0934900 LOC_Os01g70860 P0423A12.27 P0492G09.8 ENOG411DV9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA methyl transferase NA NA NA NA NA NA NA ENOG411DV9I PCMP-H90 Q9LYU9 PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270, chloroplastic 84263 Pentatricopeptide repeat-containing protein At5g13270, chloroplastic chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425]; RNA modification [GO:0009451] locus:2183886; AT5G13270 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DV9H SCL16,SCL32 Q2V2T9,Q9SN22 SCL16_ARATH,SCL32_ARATH Putative scarecrow-like protein 16 (AtSCL16),Scarecrow-like protein 32 (AtSCL32) (GRAS family protein 18) (AtGRAS-18) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 23287,46355 Putative scarecrow-like protein 16 (AtSCL16),Scarecrow-like protein 32 (AtSCL32) (GRAS family protein 18) (AtGRAS-18) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. locus:1009023400;,locus:2083073; AT5G67411,AT3G49950 Scarecrow-like protein Os07g0589200 protein,Os05g0500600 protein (cDNA clone:J023050L12, full insert sequence) B9FY68,Q6AUW2 B9FY68_ORYSJ,Q6AUW2_ORYSJ Os07g0589200 OsJ_24947 OSNPB_070589200,Os05g0500600 Os05g0500600 OJ1057_B02.15 OSJNBa0017K09.1 OSNPB_050500600 ENOG411DV9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dual specificity protein phosphatase Diacylglycerol kinase catalytic region Os01g0859400 protein (cDNA clone:J023106K01, full insert sequence) (cDNA clone:J023140D10, full insert sequence) (cDNA clone:J033071D07, full insert sequence) Q5N7C8 Q5N7C8_ORYSJ P0489B03.12-1 P0679C12.2-1 Os01g0859400 OSNPB_010859400 ENOG411DV9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cysteine synthase NA NA NA NA NA NA NA ENOG411DV9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR Os07g0655500 protein Q0D412 Q0D412_ORYSJ Os07g0655500 Os07g0655500 OSNPB_070655500 ENOG411DV9T Q8GW57,A0A1P8AWL0 PP134_ARATH,A0A1P8AWL0_ARATH Pentatricopeptide repeat-containing protein At1g80150, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein 45506,36785 Pentatricopeptide repeat-containing protein At1g80150, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2016249; AT1G80150 Pentatricopeptide repeat-containing protein Os08g0499800 protein (Putative drought-inducible protein 1OS) (cDNA clone:J033080D22, full insert sequence) Q6ZKM5 Q6ZKM5_ORYSJ Os08g0499800 OJ1118_A06.9 OSNPB_080499800 ENOG411DV9W MIF21.13 B6EUA7,B3H5R1,F4K087 B6EUA7_ARATH,B3H5R1_ARATH,F4K087_ARATH Rrp15p protein 32519,34479,39762 Rrp15p protein rRNA processing [GO:0006364],nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470] locus:2164708; AT5G48240 Rrp15p Os11g0266000 protein (Transposon protein, putative, unclassified) (Transposon protein, putative, unclassified, expressed) (cDNA clone:J033028G10, full insert sequence) Q53LZ3 Q53LZ3_ORYSJ Os11g0266000 LOC_Os11g16480 Os11g0266000 OsJ_33580 OSNPB_110266000 ENOG411DV9V Q0WUY5 Q0WUY5_ARATH Flocculation protein (DUF1296) (Uncharacterized protein At3g07660) 90076 Flocculation protein (DUF1296) (Uncharacterized protein At3g07660) mRNA binding [GO:0003729] locus:2091087; AT3G07660 Protein of unknown function (DUF1296) Os09g0261400 protein (cDNA clone:001-119-B01, full insert sequence) Q6EP65 Q6EP65_ORYSJ Os09g0261400 Os09g0261400 B1077E10.21 OsJ_28582 OSNPB_090261400 P0638A12.10 ENOG411DV9Q Q84R15,F4IL68 Q84R15_ARATH,F4IL68_ARATH SH3 domain-containing protein (Uncharacterized protein At2g07360) (Uncharacterized protein At2g07370),SH3 domain-containing protein 130078,130344 SH3 domain-containing protein (Uncharacterized protein At2g07360) (Uncharacterized protein At2g07370),SH3 domain-containing protein cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886] locus:2054875; AT2G07360 SH3 Os03g0265700 protein (SH3 domain containing protein, expressed),Os03g0265666 protein,Os03g0265700 protein (Fragment) Q10NL9,A0A0P0VVU9,A0A0P0VVR4 Q10NL9_ORYSJ,A0A0P0VVU9_ORYSJ,A0A0P0VVR4_ORYSJ Os03g0265700 LOC_Os03g15900 OSNPB_030265700,Os03g0265666 OSNPB_030265666,Os03g0265700 OSNPB_030265700 ENOG411DV9P RABE1D,RABE1A,RABE1C,RABE1E,MMN10.12 Q9LZD4,O24466,P28186,Q9SF91,Q9FJF1 RAE1D_ARATH,RAE1A_ARATH,RAE1C_ARATH,RAE1E_ARATH,Q9FJF1_ARATH Ras-related protein RABE1d (AtRABE1d) (Ras-related protein Rab8C) (AtRab8C),Ras-related protein RABE1a (AtRABE1a) (Ras-related protein Rab8B) (AtRab8B),Ras-related protein RABE1c (AtRABE1c) (Ras-related protein Ara-3) (Ras-related protein Rab8A) (AtRab8A),Ras-related protein RABE1e (AtRABE1e) (Ras-related protein Rab8E) (AtRab8E),Putative GTP-binding protein ara-3 (Rab-type small GTP-binding protein-like) (Ras-related small GTP-binding family protein) FUNCTION: Involved in membrane trafficking from the Golgi to the plasma membrane. {ECO:0000250}. R-ATH-5620916;R-ATH-6798695;R-ATH-8873719; 24037,23939,23835,24295,23834 Ras-related protein RABE1d (AtRABE1d) (Ras-related protein Rab8C) (AtRab8C),Ras-related protein RABE1a (AtRABE1a) (Ras-related protein Rab8B) (AtRab8B),Ras-related protein RABE1c (AtRABE1c) (Ras-related protein Ara-3) (Ras-related protein Rab8A) (AtRab8A),Ras-related protein RABE1e (AtRABE1e) (Ras-related protein Rab8E) (AtRab8E),Putative GTP-binding protein ara-3 (Rab-type small GTP-binding protein-like) (Ras-related small GTP-binding family protein) Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein secretion [GO:0009306]; regulation of exocytosis [GO:0017157]; vesicle docking involved in exocytosis [GO:0006904],cytosol [GO:0005829]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein secretion [GO:0009306]; regulation of exocytosis [GO:0017157]; vesicle docking involved in exocytosis [GO:0006904],Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; ethylene-activated signaling pathway [GO:0009873]; protein secretion [GO:0009306]; regulation of exocytosis [GO:0017157]; vesicle docking involved in exocytosis [GO:0006904],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein secretion [GO:0009306]; regulation of exocytosis [GO:0017157]; vesicle docking involved in exocytosis [GO:0006904] locus:2142684;,locus:2084056;,locus:2075251;,locus:2085089;,locus:2168103; AT5G03520,AT3G53610,AT3G46060,AT3G09900,AT5G59840 ras-related protein Os05g0461300 protein (Putative GTP-binding protein) (cDNA clone:006-310-H04, full insert sequence) (cDNA clone:006-311-F01, full insert sequence) (cDNA clone:J033135H16, full insert sequence),Ethylene-responsive small GTP-binding protein (Os03g0819900 protein) (Ras-related protein ARA-3, putative, expressed) (Small GTP-binding protein) (cDNA clone:001-039-C11, full insert sequence) (cDNA clone:J033126H16, full insert sequence),Os07g0239400 protein (Putative ethylene-responsive small GTP-binding protein) (cDNA clone:J013156E05, full insert sequence),Os07g0195100 protein (Fragment) Q6L502,Q84TA8,Q7XHP7,Q0D7Z4,A0A0P0X3H7 Q6L502_ORYSJ,Q84TA8_ORYSJ,Q7XHP7_ORYSJ,Q0D7Z4_ORYSJ,A0A0P0X3H7_ORYSJ Os05g0461300 OJ1281_H05.12 OsJ_18820 OSNPB_050461300,OJ1754_E06.16 GTPBP LOC_Os03g60530 Os03g0819900 OsJ_13134 OSNPB_030819900,P0565A07.136 P0523A04.108 Os07g0239400 OsJ_23656 OSNPB_070239400,Os07g0195100 Os07g0195100 OSNPB_070195100,Os07g0195100 OSNPB_070195100 ENOG411DV9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Orn/Lys/Arg decarboxylase C-terminal domain NA NA NA NA NA NA NA ENOG411DV9R QRT1 Q9FM79,A0A1P8BEF8 PME62_ARATH,A0A1P8BEF8_ARATH Pectinesterase QRT1 (AtQRT1) (PE QRT1) (EC 3.1.1.11) (Pectin methylesterase 62) (AtPME62) (Pectin methylesterase QRT1) (Protein QUARTET 1),Pectinesterase (EC 3.1.1.11) DISRUPTION PHENOTYPE: The mature pollen grains are arranged in a tetrad. {ECO:0000269|PubMed:16980565}. Pollen grains are released as tetrads whereas wild-type grains are released as monads.,No visible phenotype.,Produced only monads (like wild-type). Tetrad pollen-G. Coperhaver-2006 FUNCTION: Pectinesterase required for cell type-specific pectin degradation to separate microspores. {ECO:0000269|PubMed:16980565, ECO:0000269|PubMed:8197459, ECO:0000269|PubMed:9744097}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589}. ARA:AT5G55590-MONOMER; 3.1.1.11 42475,36816 Pectinesterase QRT1 (AtQRT1) (PE QRT1) (EC 3.1.1.11) (Pectin methylesterase 62) (AtPME62) (Pectin methylesterase QRT1) (Protein QUARTET 1),Pectinesterase (EC 3.1.1.11) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; aspartyl esterase activity [GO:0045330]; lyase activity [GO:0016829]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed in anther tissues shortly after meiosis is completed and during the late developmental phases of siliques. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:16980565}. TISSUE SPECIFICITY: Expressed in flower buds, siliques, developing guard cells, floral nectares, at the stigmatic surface, in the hypocotyl-root transition zone and the area of lateral root emergence. Not expressed in mature leaves. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:16980565}. locus:2162102; AT5G55590 pectinesterase Pectinesterase (EC 3.1.1.11) Q69J29 Q69J29_ORYSJ Os07g0607400 OSJNBa0072I06.24 OSNPB_070607400 P0493C06.38 ENOG411DV9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3133) Os05g0479900 protein (cDNA clone:002-155-F12, full insert sequence) Q75GM3 Q75GM3_ORYSJ Os05g0479900 OsJ_18940 OSJNBa0018K15.16 OSNPB_050479900 ENOG411DV9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os01g0367500 protein,Os02g0550500 protein (Fragment),Os05g0225101 protein,Os06g0661000 protein (Fragment),Os08g0337601 protein,Os04g0195400 protein (Fragment),Os09g0105900 protein A0A0P0V2M7,A0A0P0VKC6,A0A0P0WJG3,A0A0P0WZR5,A0A0P0XET2,A0A0P0W787,A0A0P0XKK2 A0A0P0V2M7_ORYSJ,A0A0P0VKC6_ORYSJ,A0A0P0WJG3_ORYSJ,A0A0P0WZR5_ORYSJ,A0A0P0XET2_ORYSJ,A0A0P0W787_ORYSJ,A0A0P0XKK2_ORYSJ Os01g0367500 OSNPB_010367500,Os02g0550500 OSNPB_020550500,Os05g0225101 OSNPB_050225101,Os06g0661000 OSNPB_060661000,Os08g0337601 OSNPB_080337601,Os04g0195400 OSNPB_040195400,Os09g0105900 OSNPB_090105900 ENOG411DV9Z PARG1,PARG2,TEJ Q9SKB3,Q8VYA1,A0A1P8B1V5,A8MRN2 PARG1_ARATH,PARG2_ARATH,A0A1P8B1V5_ARATH,A8MRN2_ARATH Poly(ADP-ribose) glycohydrolase 1 (EC 3.2.1.143),Probable poly(ADP-ribose) glycohydrolase 2 (EC 3.2.1.143),Poly(ADP-ribose) glycohydrolase 2,Poly (ADP-ribose) glycohydrolase (PARG) Long circadian rhythms-S. Kay-2002,Susceptible to Botrytis cinerea-A. Bent-2010 FUNCTION: Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase (By similarity). Involved in establishing period length of the circadian oscillator. May regulate post-translational poly(ADP-ribosyl)ation of an oscillator component. {ECO:0000250, ECO:0000269|PubMed:12110167}.,FUNCTION: Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. {ECO:0000250}. ARA:AT2G31870-MONOMER;,ARA:AT2G31865-MONOMER; 3.2.1.143 62170,58943,47606,62099 Poly(ADP-ribose) glycohydrolase 1 (EC 3.2.1.143),Probable poly(ADP-ribose) glycohydrolase 2 (EC 3.2.1.143),Poly(ADP-ribose) glycohydrolase 2,Poly (ADP-ribose) glycohydrolase (PARG) poly(ADP-ribose) glycohydrolase activity [GO:0004649]; carbohydrate metabolic process [GO:0005975]; cellular response to DNA damage stimulus [GO:0006974]; defense response to fungus [GO:0050832]; regulation of DNA repair [GO:0006282]; response to osmotic stress [GO:0006970]; response to oxidative stress [GO:0006979]; response to water deprivation [GO:0009414]; rhythmic process [GO:0048511]; stomatal closure [GO:0090332],poly(ADP-ribose) glycohydrolase activity [GO:0004649]; carbohydrate metabolic process [GO:0005975]; cellular response to DNA damage stimulus [GO:0006974]; defense response to fungus [GO:0050832],poly(ADP-ribose) glycohydrolase activity [GO:0004649]; carbohydrate metabolic process [GO:0005975] locus:2045243;,locus:504956053; AT2G31870,AT2G31865 poly(ADP-ribose) glycohydrolase Os03g0843900 protein (Putative poly(ADP-ribose) glycohydrolase) Q75LD2 Q75LD2_ORYSJ OSJNBa0032G11.11 Os03g0843900 OSNPB_030843900 ENOG411EKCN RPL40B,RPL40A Q42202,B9DHA6 RL40B_ARATH,RL40A_ARATH Ubiquitin-60S ribosomal protein L40-2 (Protein EARLY-RESPONSIVE TO DEHYDRATION 16) (Protein EMBRYO DEFECTIVE 2167) (Protein HAPLESS 4) [Cleaved into: Ubiquitin; 60S ribosomal protein L40-2 (CEP52)],Ubiquitin-60S ribosomal protein L40-1 [Cleaved into: Ubiquitin; 60S ribosomal protein L40-1 (CEP52)] Male and female gametophyte defective; Embryo defective-D. Meinke-2003 FUNCTION: Ubiquitin: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: 60S ribosomal protein L40-2: component of the 60S subunit of the ribosome.,FUNCTION: Ubiquitin: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: 60S ribosomal protein L40-1: component of the 60S subunit of the ribosome. MISCELLANEOUS: Ubiquitin is encoded by 16 different genes. Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to a ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. 14733 Ubiquitin-60S ribosomal protein L40-2 (Protein EARLY-RESPONSIVE TO DEHYDRATION 16) (Protein EMBRYO DEFECTIVE 2167) (Protein HAPLESS 4) [Cleaved into: Ubiquitin; 60S ribosomal protein L40-2 (CEP52)],Ubiquitin-60S ribosomal protein L40-1 [Cleaved into: Ubiquitin; 60S ribosomal protein L40-1 (CEP52)] nucleus [GO:0005634]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; protein ubiquitination [GO:0016567]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2079924;,locus:2053496; AT3G52590,AT2G36170 Ubiquitin-60S ribosomal protein L40 Os09g0568400 protein (Fragment),Os03g0234200 protein (Fragment) Q0IZI1,A0A0P0VV52 Q0IZI1_ORYSJ,A0A0P0VV52_ORYSJ Os09g0568400 OSNPB_090568400,Os03g0234200 OSNPB_030234200 ENOG411EKCH Q9XI21 PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480, mitochondrial 67532 Pentatricopeptide repeat-containing protein At1g15480, mitochondrial chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2037823; AT1G15480 PPR repeat NA NA NA NA NA NA NA ENOG411EKCF CRWN2,LINC2 Q9SAF6,A0A1P8AUZ9 CRWN2_ARATH,A0A1P8AUZ9_ARATH Protein CROWDED NUCLEI 2 (Protein LITTLE NUCLEI 2),Nuclear matrix constituent protein-like protein DISRUPTION PHENOTYPE: Altered nuclear morphology. In plants lacking both CRWN1 and CRWN2, moderate dwarf and leaf-curling phenotype associated with endoreplication and strongly reduced nuclear size. Plants lacking both CRWN2 and CRWN4 exhibit slightly smaller rosettes. Plants lacking both CRWN1 and CRWN2 exhibit markedly smaller rosettes. Plants lacking CRWN1, CRWN2 and CRWN4 are extremely stunted and set few seed. {ECO:0000269|PubMed:17873096, ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514}. Nuclei are significantly smaller than wild-type nuclei.,Epidermal cells are approximately one-fourth the size of wild-type epidermal cells. Whole plant is dwarfed with respect to wild-type and single mutant siblings in segregating F2 family. Spindle-shaped nuclei are almost entirely absent. Number of chromocenters in double mutant nuclei is half that of wild type nuclei. Nuclear DNA packaging density is increased with respect to wild type. Small nuclei; No other phenotypes detected-E. Richards-2007 FUNCTION: Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity). Required for nucleus structure organization (e.g. size and shape) (PubMed:17873096, PubMed:24308514, PubMed:23396599). {ECO:0000250|UniProtKB:Q6ZWR6, ECO:0000269|PubMed:17873096, ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514}. 129924,131514 Protein CROWDED NUCLEI 2 (Protein LITTLE NUCLEI 2),Nuclear matrix constituent protein-like protein cytoplasm [GO:0005737]; nuclear lamina [GO:0005652]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nucleoplasm [GO:0005654]; nucleus organization [GO:0006997]; regulation of nucleus size [GO:0097298] TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, flowers and flower stalks. {ECO:0000269|PubMed:23396599}. locus:2031875; AT1G13220 Inherit from KOG: leucine rich repeat NA NA NA NA NA NA NA ENOG411EKCB BHLH68 Q8S3D1,A0A1P8B4W7 BH068_ARATH,A0A1P8B4W7_ARATH Transcription factor bHLH68 (Basic helix-loop-helix protein 68) (AtbHLH68) (bHLH 68) (Transcription factor EN 60) (bHLH transcription factor bHLH068),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44584,39284 Transcription factor bHLH68 (Basic helix-loop-helix protein 68) (AtbHLH68) (bHLH 68) (Transcription factor EN 60) (bHLH transcription factor bHLH068),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2119901; AT4G29100 HLH NA NA NA NA NA NA NA ENOG411EKCX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EKCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0641700 protein) (cDNA clone:J023064C07, full insert sequence),Os03g0641700 protein (Fragment) Q6AST9,A0A0P0W163 Q6AST9_ORYSJ,A0A0P0W163_ORYSJ LOC_Os03g44010 Os03g0641700 B1394A07.2 OSNPB_030641700,Os03g0641700 OSNPB_030641700 ENOG411EKC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os07g0535700 protein (Fragment),Os07g0535600 protein Q0D5U0,A0A0P0X7G4 Q0D5U0_ORYSJ,A0A0P0X7G4_ORYSJ Os07g0535700 Os07g0535700 OSNPB_070535700,Os07g0535600 OSNPB_070535600 ENOG411EKC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKC6 TRFL10 C0SVN2,A0A1P8BF38,A0A1P8BEZ4 C0SVN2_ARATH,A0A1P8BF38_ARATH,A0A1P8BEZ4_ARATH TRF-like 10 (Uncharacterized protein At5g03780) (Fragment),TRF-like 10 47041,38830,40726 TRF-like 10 (Uncharacterized protein At5g03780) (Fragment),TRF-like 10 nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; response to salicylic acid [GO:0009751]; telomeric loop formation [GO:0031627] locus:2144568; SANT NA NA NA NA NA NA NA ENOG411E8HU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arsenical pump membrane protein NA NA NA NA NA NA NA ENOG411E8HT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8HS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8HR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0351933 protein,Os04g0351800 protein A3ASQ2,A0A0P0W8X5 A3ASQ2_ORYSJ,A0A0P0W8X5_ORYSJ Os04g0351933 OsJ_14388 OSNPB_040351933,Os04g0351800 OSNPB_040351800 ENOG411E8HQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain NA NA NA NA NA NA NA ENOG411E8HP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0419700 protein,Os08g0419800 protein A0A0P0XFW4,A0A0N7KPV3 A0A0P0XFW4_ORYSJ,A0A0N7KPV3_ORYSJ Os08g0419700 OSNPB_080419700,Os08g0419800 OSNPB_080419800 ENOG411E8HY O80833 O80833_ARATH At2g45860 (Uncharacterized protein At2g45860) 8964 At2g45860 (Uncharacterized protein At2g45860) locus:2050761; AT2G45860 NA Os02g0824400 protein (cDNA clone:J023128P21, full insert sequence) Q6K9W4 Q6K9W4_ORYSJ Os02g0824400 OJ1063_D06.12 OJ1136_C04.20 OsJ_08941 OSNPB_020824400 ENOG411E8HG Q9FXD3 Q9FXD3_ARATH F12A21.18 7403 F12A21.18 locus:2008620; AT1G67670 NA NA NA NA NA NA NA NA ENOG411E8HF psbJ P56781 PSBJ_ARATH Photosystem II reaction center protein J (PSII-J) FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_01305}. 4117 Photosystem II reaction center protein J (PSII-J) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; photosynthesis [GO:0015979] locus:504954678; ATCG00550 This protein is a component of the reaction center of photosystem II (By similarity) NA NA NA NA NA NA NA ENOG411E8HC Q9FGQ0,F4KAF8 Q9FGQ0_ARATH,F4KAF8_ARATH Nuclear polyadenylated RNA-binding protein (Uncharacterized protein At5g50830),Nuclear polyadenylated RNA-binding protein 31219,31318 Nuclear polyadenylated RNA-binding protein (Uncharacterized protein At5g50830),Nuclear polyadenylated RNA-binding protein locus:2157941; AT5G50830 NA NA NA NA NA NA NA NA ENOG411E8HB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411E8HN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8HK F3L24.15 Q9SR35 Q9SR35_ARATH F3L24.15 protein (Transmembrane protein) 12397 F3L24.15 protein (Transmembrane protein) integral component of membrane [GO:0016021] locus:2083554; AT3G09280 NA NA NA NA NA NA NA NA ENOG411E8H7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0555700 protein Q6I617 Q6I617_ORYSJ Os05g0555700 OJ1214_E03.2 OSNPB_050555700 ENOG411E8H6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0143100 protein (cDNA clone:001-024-G09, full insert sequence),Os06g0143100 protein,Cadmium tolerant 3 (Os01g0178300 protein),Os05g0178300 protein Q5VSB6,Q5VSB5,Q5VRD7,B9FMS2 Q5VSB6_ORYSJ,Q5VSB5_ORYSJ,Q5VRD7_ORYSJ,B9FMS2_ORYSJ P0535G04.32-1 Os06g0143100 OSNPB_060143100,P0535G04.32-2 Os06g0143100 OSNPB_060143100,OsCDT3 Os01g0178300 OsJ_00601 OSNPB_010178300 P0406H10.3 P0509B06.5,Os05g0178300 Os05g0178300 OsJ_17325 OSNPB_050178300 ENOG411E8H5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8H4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2647) Uncharacterized protein ycf68 (ORF133) P12173 YCF68_ORYSJ ycf68-1 LOC_Osp1g01010; ycf68-2 ENOG411E8H3 F4JPC0 F4JPC0_ARATH Cox19-like CHCH family protein 12937 Cox19-like CHCH family protein locus:2128444; AT4G23760 Inherit from euNOG: CHCH domain containing protein NA NA NA NA NA NA NA ENOG411E8H2 Q8LAB7 Q8LAB7_ARATH At5g26790 (Transmembrane protein) 7896 At5g26790 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2148478; AT5G26790 NA NA NA NA NA NA NA NA ENOG411E8H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0679600 protein Q655N6 Q655N6_ORYSJ P0003H08.15 Os06g0679600 OSNPB_060679600 ENOG411E8H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8H8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato type II proteinase inhibitor family Os03g0734300 protein (Putative roteinase inhibitor) (Type II proteinase inhibitor family protein, expressed) (cDNA clone:001-121-H07, full insert sequence) Q6AVT6 Q6AVT6_ORYSJ OSJNBa0027J18.15 LOC_Os03g52390 Os03g0734300 OsJ_12473 OSNPB_030734300 ENOG411DSES BZIP61,BZIP34 Q9M2K4,F4IN23,A0A1P8B302,A0A1I9LST2,A0A1P8B300 BZP61_ARATH,BZP34_ARATH,A0A1P8B302_ARATH,A0A1I9LST2_ARATH,A0A1P8B300_ARATH Basic leucine zipper 61 (AtbZIP61) (bZIP protein 61),Basic leucine zipper 34 (AtbZIP34) (bZIP protein 34),Basic-leucine zipper (BZIP) transcription factor family protein DISRUPTION PHENOTYPE: Pollen morphological defects, reduced pollen germination efficiency and pollen tube growth. {ECO:0000269|PubMed:19449183}. Abnormal pollen shape and exine layer-D. Honys-2009 FUNCTION: Transcriptional activator. {ECO:0000269|PubMed:17719007}.,FUNCTION: Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}. 36805,35806,25971,31645,30122 Basic leucine zipper 61 (AtbZIP61) (bZIP protein 61),Basic leucine zipper 34 (AtbZIP34) (bZIP protein 34),Basic-leucine zipper (BZIP) transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269|PubMed:19449183}. locus:2085425;,locus:2053761; AT3G58120,AT2G42380 Transcription factor Basic leucine zipper 2 (OsbZIP02) (bZIP protein 2) Q5QNI5 BZP02_ORYSJ BZIP02 Os01g0211800 LOC_Os01g11350 P0031E09.34 FUNCTION: Transcription regulator. {ECO:0000250}. ENOG411DSEH Q9C8K8,Q8L637 Q9C8K8_ARATH,Q8L637_ARATH Pyridoxamine 5'-phosphate oxidase family protein (Uncharacterized protein At1g51560) (Uncharacterized protein F5D21.3),Pyridoxamine 5'-phosphate oxidase family protein (Uncharacterized protein At3g21140) 43583,42851 Pyridoxamine 5'-phosphate oxidase family protein (Uncharacterized protein At1g51560) (Uncharacterized protein F5D21.3),Pyridoxamine 5'-phosphate oxidase family protein (Uncharacterized protein At3g21140) cofactor binding [GO:0048037] locus:2017637;,locus:2093005; AT1G51560,AT3G21140 Pyridoxamine 5-phosphate oxidase family protein Os08g0517500 protein (cDNA clone:J013026C01, full insert sequence),Os02g0148400 protein (cDNA clone:J013104M06, full insert sequence),Os02g0148400 protein (Fragment) Q7EZB9,Q6Z434,A0A0N7KEP4 Q7EZB9_ORYSJ,Q6Z434_ORYSJ,A0A0N7KEP4_ORYSJ P0700D12.111 Os08g0517500 OsJ_27937 OSNPB_080517500,Os02g0148400 OSNPB_020148400 P0479D12.15,Os02g0148400 OSNPB_020148400 ENOG411DSEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SERPIN Os05g0511800 protein A0A0P0WPC8 A0A0P0WPC8_ORYSJ Os05g0511800 OSNPB_050511800 ENOG411DY0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CDT1 Expressed protein (Os10g0489900 protein) (cDNA, clone: J065205F21, full insert sequence) Q75G59 Q75G59_ORYSJ B1288B10.10 Os10g0489900 LOC_Os10g34820 OsJ_31981 OSNPB_100489900 ENOG411E17K PER57,PER44,PER8,MVA3.170 Q43729,Q93V93,Q9LNL0,A0A1P8BGP6,A0A1P8B428 PER57_ARATH,PER44_ARATH,PER8_ARATH,A0A1P8BGP6_ARATH,A0A1P8B428_ARATH Peroxidase 57 (Atperox P57) (EC 1.11.1.7) (ATP13a) (PRXR10),Peroxidase 44 (Atperox P44) (EC 1.11.1.7) (ATP35),Peroxidase 8 (Atperox P8) (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G26010-MONOMER;,ARA:AT1G34510-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34098,33806,34332,40649,36957 Peroxidase 57 (Atperox P57) (EC 1.11.1.7) (ATP13a) (PRXR10),Peroxidase 44 (Atperox P44) (EC 1.11.1.7) (ATP35),Peroxidase 8 (Atperox P8) (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Mainly expressed in roots. {ECO:0000269|Ref.8}. locus:2175951;,locus:2120760;,locus:2009318; AT5G17820,AT4G26010,AT1G34510 peroxidase NA NA NA NA NA NA NA ENOG411E17F MQM1.18 Q9LT07 Q9LT07_ARATH Vesicle transport protein FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. {ECO:0000256|RuleBase:RU363111}. 19736 Vesicle transport protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2171706; AT5G23550 Got1/Sft2-like family Vesicle transport protein Q6Z7E9 Q6Z7E9_ORYSJ Os02g0564500 OSNPB_020564500 P0020C11.16 FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. {ECO:0000256|RuleBase:RU363111}. ENOG411E17B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Probable glucomannan 4-beta-mannosyltransferase 11 (EC 2.4.1.32) (Cellulose synthase-like protein A11) (OsCslA11) (Glucomannan synthase) (Mannan synthase 11),Os08g0434500 protein,Os08g0434632 protein Q6YWK8,A0A0P0XGC5,A0A0P0XGQ9 CSLAB_ORYSJ,A0A0P0XGC5_ORYSJ,A0A0P0XGQ9_ORYSJ CSLA11 Os08g0434500 LOC_Os08g33740 P0413H11.13 P0431A03.35,Os08g0434500 OSNPB_080434500,Os08g0434632 OSNPB_080434632 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q7PC76}. ENOG411E17Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYB transcription factor MYB transcription factor (Os07g0688200 protein) (cDNA clone:J033129J22, full insert sequence) Q0D3F9 Q0D3F9_ORYSJ Os07g0688200 Os07g0688200 OSNPB_070688200 ENOG411E17V SPL9 Q700W2 SPL9_ARATH Squamosa promoter-binding-like protein 9 Increased rate of leaf initiation. Reduced apical dominance. Slightly later flowering than normal sibs. Slightly fewer rosette leaves; Slightly increased cauline leaf number-P. Huijser-2008 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. 40847 Squamosa promoter-binding-like protein 9 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; leaf development [GO:0048366]; regulation of leaf formation [GO:2000025]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed constitutively during plant development, with a strong increase during flower development. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. locus:2059974; AT2G42200 Squamosa promoter-binding-like protein NA NA NA NA NA NA NA ENOG411E3V8 F11F8_32 Q9SF30,F4J1A6,F4J1A7 Q9SF30_ARATH,F4J1A6_ARATH,F4J1A7_ARATH POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein (Uncharacterized protein F11F8_32),POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein 44515,44444,43641 POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein (Uncharacterized protein F11F8_32),POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein locus:2075044; AT3G09730 NA NA NA NA NA NA NA NA ENOG411E3V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3V2 Q9LYZ6 Q9LYZ6_ARATH At5g02890 (HXXXD-type acyl-transferase family protein) (Uncharacterized protein At5g02890) (Uncharacterized protein F9G14_200) 38803 At5g02890 (HXXXD-type acyl-transferase family protein) (Uncharacterized protein At5g02890) (Uncharacterized protein F9G14_200) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; long-chain fatty acid biosynthetic process [GO:0042759]; wax biosynthetic process [GO:0010025] locus:2151201; AT5G02890 Transferase family NA NA NA NA NA NA NA ENOG411E3V3 ERF024 Q9SJR0 ERF24_ARATH Ethylene-responsive transcription factor ERF024 hrd-D mutants produce elevated levels of the HRD transcript. Moreover the expression domain of HRD expands from inflorescence tissue into vegetative tissue in the hrd-D mutants. The mutants have smaller thicker green leaves with extra palisade and spongy mesophyll cell layers. Their root network is more dense and the roots have more cortical cell layers. The mutants tolerate drought and salt stress better than wild type plants. A number of genes related to drought are differentially expressed in wild type and hrd-D mutants FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 19790 Ethylene-responsive transcription factor ERF024 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to fungus [GO:0050832]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2044845; AT2G36450 Transcription factor NA NA NA NA NA NA NA ENOG411E3V0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os03g0229100 protein A0A0P0VUZ8 A0A0P0VUZ8_ORYSJ Os03g0229100 OSNPB_030229100 ENOG411E3V6 F21F14.90 Q9M273 Q9M273_ARATH At3g61920 (Uncharacterized protein F21F14.9) (Uncharacterized protein F21F14.90) (UvrABC system protein C) 19939 At3g61920 (Uncharacterized protein F21F14.9) (Uncharacterized protein F21F14.90) (UvrABC system protein C) locus:2079572; AT3G61920 NA NA NA NA NA NA NA NA ENOG411E3V7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Zinc finger protein 36 (Protein BROAD-SPECTRUM RESISTANCE DIGU 1) Q75KE5 ZFP36_ORYSJ ZFP36 BSR-D1 Os03g0437200 LOC_Os03g32230 OsJ_11395 OSJNBa0054H04.4 OSJNBb0034P05.8 FUNCTION: Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}. MISCELLANEOUS: Plants over-expressing ZFP36 display enhanced tolerance to drought and oxidative stresses (PubMed:25071223). A natural allele in the promoter of ZFP36 in the durably resistant rice variety Digu confers broad-spectrum resistance to rice blast (Magnaporthe oryzae) (PubMed:28666113). {ECO:0000269|PubMed:25071223, ECO:0000269|PubMed:28666113}. ENOG411E3V4 Q9ZQF5 Q9ZQF5_ARATH AT2G15580 protein (At2g15580) (Putative RING-H2 zinc finger protein) (RING finger family protein) (RING/U-box superfamily protein) 22308 AT2G15580 protein (At2g15580) (Putative RING-H2 zinc finger protein) (RING finger family protein) (RING/U-box superfamily protein) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2053583; AT2G15580 zinc finger family protein Os02g0798200 protein (RING-H2 zinc finger protein-like) (cDNA clone:006-301-G04, full insert sequence) (cDNA clone:006-308-A03, full insert sequence),Os02g0682700 protein Q69QZ7,A0A0P0VNA9 Q69QZ7_ORYSJ,A0A0P0VNA9_ORYSJ Os02g0798200 OJ1695_D07.6 OSNPB_020798200,Os02g0682700 OSNPB_020682700 ENOG411E3V5 rps12-A; rps12-B P62126 RR12_ARATH 30S ribosomal protein S12, chloroplastic FUNCTION: With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). {ECO:0000250}. MISCELLANEOUS: Exons 2 and 3 are cis-spliced, while a trans-splicing reaction is required to link exons 1 and 2. 13764 30S ribosomal protein S12, chloroplastic chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; small ribosomal subunit [GO:0015935]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] TISSUE SPECIFICITY: Expressed in all plant tissues. locus:504954475;locus:504954488;locus:504954489; ATCG00065ATCG00905;ATCG01230; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity) 30S ribosomal protein S12, chloroplastic P12149 RR12_ORYSJ rps12-A; rps12-B FUNCTION: With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). {ECO:0000250}. ENOG411E3VJ A0A1P8BH59 A0A1P8BH59_ARATH Calmodulin binding protein FUNCTION: Binds calmodulin in a calcium-dependent manner in vitro. May play a role in general plant defense including R gene-mediated responses. {ECO:0000269|PubMed:12825696}. 168618 Calmodulin binding protein plasma membrane [GO:0005886]; calmodulin binding [GO:0005516] locus:2150615; AT5G04020 Plant calmodulin-binding domain NA NA NA NA NA NA NA ENOG411E3VK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein B3 domain-containing protein Os04g0386900,Os04g0386900 protein (Fragment) Q7XLP4,A0A0P0W9E4 Y4869_ORYSJ,A0A0P0W9E4_ORYSJ Os04g0386900 LOC_Os04g31730 OSJNBa0044M19.12,Os04g0386900 OSNPB_040386900 ENOG411E3VH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3VI KAN4 Q9FJV5 KAN4_ARATH Probable transcription factor KAN4 (Protein ABERRANT TESTA SHAPE) (Protein KANADI 4) DISRUPTION PHENOTYPE: Ovules with a single integument instead of two. {ECO:0000269|PubMed:16623911}. aberrant seed shape (heart-shaped vs. oblong) exhibits reduced dormancy.,ats-1 ovules have only a single integument in place of the normal two. The integument appears to be derived from congenital fusion of the two wild-type integuments and consists of three to five cell layers with characteristics of both wild-type outer and inner integuments.,Outer integument of the ovule is absent and the inner integument is replaced by a relatively amorphous collar-like structure.,Similar to kan1 kan2 double mutant. However the ovules have a novel phenotype forming a single amorphous structure in place of both integuments. Complete loss of integuments-C. Gasser-2006 FUNCTION: Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. MISCELLANEOUS: Plants overexpressing KAN4 show reduced or absent ovule outer integument and color alteration of the seed coat. 30961 Probable transcription factor KAN4 (Protein ABERRANT TESTA SHAPE) (Protein KANADI 4) cell wall [GO:0005618]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; integument development [GO:0080060]; plant ovule development [GO:0048481]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269|PubMed:16623911}. TISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269|PubMed:15286295}. locus:2163852; AT5G42630 transcription factor Myb-like DNA-binding domain, SHAQKYF class family protein, expressed (Os03g0766500 protein) (cDNA clone:002-142-G11, full insert sequence) Q10EL0 Q10EL0_ORYSJ LOC_Os03g55760 Os03g0766500 OSNPB_030766500 ENOG411E3VN Q9LFU8 Q9LFU8_ARATH At5g15780 (Pollen Ole e 1 allergen and extensin family protein) (Proline-rich protein) 42978 At5g15780 (Pollen Ole e 1 allergen and extensin family protein) (Proline-rich protein) integral component of membrane [GO:0016021] locus:2143241; AT5G15780 pollen Ole e 1 allergen and extensin NA NA NA NA NA NA NA ENOG411E3VM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os07g0524400 protein A0A0P0X6J5 A0A0P0X6J5_ORYSJ Os07g0524400 OSNPB_070524400 ENOG411E3VB Q9CA32 Q9CA32_ARATH At1g68490 (Translocase subunit seca) (Uncharacterized protein At1g68490) (Uncharacterized protein T26J14.6) 19770 At1g68490 (Translocase subunit seca) (Uncharacterized protein At1g68490) (Uncharacterized protein T26J14.6) locus:2201307; AT1G68490 NA NA NA NA NA NA NA NA ENOG411E3VC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3VA ERF10 Q9ZWA2 ERF77_ARATH Ethylene-responsive transcription factor 10 (AtERF10) (Ethylene-responsive element-binding factor 10) (EREBP-10) FUNCTION: Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. 26393 Ethylene-responsive transcription factor 10 (AtERF10) (Ethylene-responsive element-binding factor 10) (EREBP-10) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2024249; AT1G03800 Transcription factor OSJNBa0085I10.10 protein (Os04g0610400 protein) Q7XPL6 Q7XPL6_ORYSJ Os04g0610400 OSJNBa0085I10.10 OSNPB_040610400 ENOG411E3VF MNJ7.25 Q9FGJ1 Q9FGJ1_ARATH Homeodomain-like superfamily protein (Similarity to DNA-binding protein GT) 45575 Homeodomain-like superfamily protein (Similarity to DNA-binding protein GT) DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2169013; AT5G47660 Transcription factor NA NA NA NA NA NA NA ENOG411E3VG WRKY75 Q9FYA2 WRK75_ARATH Probable WRKY transcription factor 75 (WRKY DNA-binding protein 75) Susceptible to bacterial infection-J. Caballero-2009 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 16802 Probable WRKY transcription factor 75 (WRKY DNA-binding protein 75) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; atrichoblast differentiation [GO:0010055]; lateral root development [GO:0048527]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122]; regulation of DNA-templated transcription in response to stress [GO:0043620]; regulation of response to nutrient levels [GO:0032107]; transcription, DNA-templated [GO:0006351] locus:2179862; AT5G13080 WRKY transcription factor Os11g0490900 protein (WRKY DNA binding domain containing protein, expressed) (WRKY transcription factor) (cDNA clone:002-152-B08, full insert sequence) Q2R432 Q2R432_ORYSJ Os11g0490900 LOC_Os11g29870 Os11g0490900 OsJ_33930 OSNPB_110490900 ENOG411E3VD BHLH113 Q9LT67,A0A1I9LT42,F4I3E6,A0A1P8AM34,A0A1I9LT41 BH113_ARATH,A0A1I9LT42_ARATH,F4I3E6_ARATH,A0A1P8AM34_ARATH,A0A1I9LT41_ARATH Transcription factor bHLH113 (Basic helix-loop-helix protein 113) (AtbHLH113) (bHLH 113) (Transcription factor EN 61) (bHLH transcription factor bHLH113),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 28787,24209,27399,27270,22078 Transcription factor bHLH113 (Basic helix-loop-helix protein 113) (AtbHLH113) (bHLH 113) (Transcription factor EN 61) (bHLH transcription factor bHLH113),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366] locus:2090679;,locus:2007263; AT3G19500,AT1G49830 Transcription factor Helix-loop-helix DNA-binding domain containing protein, expressed (Os03g0759700 protein) (Putative ethylene-responsive protein) (cDNA clone:J023136C11, full insert sequence) Q94HA7 Q94HA7_ORYSJ Os03g0759700 LOC_Os03g55220 Os03g0759700 OsJ_12666 OSJNBb0048A17.16 OSNPB_030759700 ENOG411E3VE PKS2,PKS1 Q9M9T4,Q9SWI1 PKS2_ARATH,PKS1_ARATH Protein PHYTOCHROME KINASE SUBSTRATE 2,Protein PHYTOCHROME KINASE SUBSTRATE 1 DISRUPTION PHENOTYPE: Increased hypocotyl growth inhibition and cotyledon unfolding responses in the very low fluence response (VLFR) mode. Reduced phototropic response. Reduced hyponasty when grown under blue light. No effect on negative root phototropism. Auxin accumulation in protoplasts. {ECO:0000269|PubMed:14615593, ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:18024556, ECO:0000269|PubMed:20071603}.,DISRUPTION PHENOTYPE: Increased hypocotyl growth inhibition and cotyledon unfolding responses in the very low fluence response (VLFR) mode. Reduced phototropic response. Reduced hyponasty when grown under blue light. Loss of negative root phototropism. Auxin accumulation in protoplasts. {ECO:0000269|PubMed:14615593, ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:18024556, ECO:0000269|PubMed:20071603}. Under hourly R pulses the pks mutation also had no effect in the phyA background.,Wild-type-like hypocotyl growth inhibition response to hourly FR pulses.,With respect to cotyledon unfolding and greening the double mutant was indistinguishable from the wild type.,Blocking of greening was enhanced in the mutant exposed to hourly pulses of FR.,In dark controls hypocotyl growth was unaffected by the mutations and the cotyledons remained fully closed. Compared with those in the wild type hypocotyl growth inhibition and cotyledon unfolding responses to hourly FR pulses were significantly greater in the mutant.,No differences were observed under hourly R pulses or continuous FR between wild-type and mutant plants.,No obvious root growth phenotypes.,Under FRc conditions the length mutant hypocotyls is decreased compared to that of wild-type plants. Under Rc conditions the hypocotyl length is also decreased and the cotyledon area is larger. Short hypocotyl and expanded cotyledon under hourly far red pulses-C. Fankhauser-2003,Pale under hourly far red pulses-C. Fankhauser-2003 FUNCTION: Acts predominantly in the phot1 pathway. Involved in the leaf positioning and also in the phot2 pathway controlling the leaf flattening. Component of the network that modulates the very low-fluence response (VLFR) branch of phyA signaling. Regulates phytochrome-mediated photomorphogenesis and hypocotyl phototropism. May act by controlling auxin homeostasis. {ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:20071603}.,FUNCTION: May be responsible for light-regulated cytoplasmic sequestration of phytochromes or may be a negative regulator of phytochrome B signaling. Component of the network that modulates the very low-fluence response (VLFR) branch of phyA signaling. Acts positively in PHOT1 signaling. Regulates phytochrome-mediated photomorphogenesis and hypocotyl phototropism. Involved in the control of leaf flattening and leaf positioning. Promotes negative root phototropism and negatively regulates root gravitropism. May act by controlling auxin homeostasis. {ECO:0000269|PubMed:10348744, ECO:0000269|PubMed:14615593, ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:18024556, ECO:0000269|PubMed:20071603}. MISCELLANEOUS: PKS1, PKS2 and/or PKS4 are essential for phototropism but not for inhibition of gravitropism under long-term blue light irradiation. 49131,48085 Protein PHYTOCHROME KINASE SUBSTRATE 2,Protein PHYTOCHROME KINASE SUBSTRATE 1 plasma membrane [GO:0005886]; leaf development [GO:0048366]; phototropism [GO:0009638]; red, far-red light phototransduction [GO:0009585],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; phototropism [GO:0009638]; positive gravitropism [GO:0009958]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; response to far red light [GO:0010218]; response to red light [GO:0010114] DEVELOPMENTAL STAGE: Decreases with development. {ECO:0000269|PubMed:10348744}. TISSUE SPECIFICITY: Expressed in leaves, with the strongest expression on edges of the laminas. Not found in roots. {ECO:0000269|PubMed:14615593, ECO:0000269|PubMed:20071603}.,TISSUE SPECIFICITY: Expressed in young seedlings in both darkness and light. Moderate in leaves and very low in roots and flowers. Expressed in the elongation zone of the root and hypocotyl. {ECO:0000269|PubMed:10348744, ECO:0000269|PubMed:14615593, ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:18024556}. locus:2012502;,locus:2056695; AT1G14280,AT2G02950 phytochrome kinase substrate NA NA NA NA NA NA NA ENOG411E3VZ T2E22.4 Q9LTX0 Q9LTX0_ARATH AT3g12650/T2E22_103 (Transmembrane protein) (Uncharacterized protein T2E22.4) 26887 AT3g12650/T2E22_103 (Transmembrane protein) (Uncharacterized protein T2E22.4) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] locus:2101207; AT3G12650 NA Os02g0718000 protein (cDNA clone:J023007L05, full insert sequence) Q6ZGV4 Q6ZGV4_ORYSJ Os02g0718000 Os02g0718000 OJ2056_H01.24 OsJ_08159 OSNPB_020718000 ENOG411E3VX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 Zinc finger CCCH domain-containing protein 1 (OsC3H1) Q5VR07 C3H1_ORYSJ Os01g0174600 LOC_Os01g07930 OSJNBa0089K24.23 ENOG411E3VY Q9C825,Q5BPW9 Q9C825_ARATH,Q5BPW9_ARATH Expressed protein (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein F19K6.6),Expressed protein (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) 23648,25726 Expressed protein (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein F19K6.6),Expressed protein (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; response to desiccation [GO:0009269] locus:2018154; AT1G52330 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E3VR rpl16 Q84WZ8,P56793 RM16L_ARATH,RK16_ARATH 60S ribosomal protein L16-like, mitochondrial,50S ribosomal protein L16, chloroplastic FUNCTION: Component of the large subunit of mitochondrial ribosome. {ECO:0000250}. 32985,15294 60S ribosomal protein L16-like, mitochondrial,50S ribosomal protein L16, chloroplastic cytosolic large ribosomal subunit [GO:0022625]; mitochondrion [GO:0005739]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic large ribosomal subunit [GO:0022625]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954702; AT2G28815,ATCG00790 ribosomal protein L16 50S ribosomal protein L16, chloroplastic,Os11g0269100 protein (Fragment) P0C443,A0A0P0Y1A9 RK16_ORYSJ,A0A0P0Y1A9_ORYSJ rpl16 LOC_Osp1g00720 Nip111,Os11g0269100 OSNPB_110269100 ENOG411E3VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os12g0100100 protein (RNA recognition motif family protein, expressed) (cDNA clone:006-309-B07, full insert sequence) (cDNA, clone: J065158B05, full insert sequence),Os12g0100100 protein (Fragment),Os11g0100200 protein (Fragment) Q2QZ01,A0A0P0Y6E5,A0A0P0XYR1 Q2QZ01_ORYSJ,A0A0P0Y6E5_ORYSJ,A0A0P0XYR1_ORYSJ LOC_Os12g01010 Os12g0100100 OSNPB_120100100,Os12g0100100 OSNPB_120100100,Os11g0100200 OSNPB_110100200 ENOG411E3VP ndhL Q9CAC5 NDHL_ARATH NAD(P)H-quinone oxidoreductase subunit L, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit L) (NDH subunit L) (NDH-L) (NADH-plastoquinone oxidoreductase subunit L) (Protein CHLORORESPIRATORY REDUCTION 23) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:18388109}. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. ARA:GQT-1941-MONOMER; 1.6.5.- 21963 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit L) (NDH subunit L) (NDH-L) (NADH-plastoquinone oxidoreductase subunit L) (Protein CHLORORESPIRATORY REDUCTION 23) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; thylakoid membrane [GO:0042651]; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]; NADH dehydrogenase complex (plastoquinone) assembly [GO:0010258]; photosynthetic electron transport in photosystem I [GO:0009773]; transport [GO:0006810] locus:2013925; AT1G70760 NADH dehydrogenase transmembrane subunit Os05g0348100 protein (Fragment) A0A0P0WL62 A0A0P0WL62_ORYSJ Os05g0348100 OSNPB_050348100 ENOG411E3VQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os02g0781300 protein A0A0P0VQ94 A0A0P0VQ94_ORYSJ Os02g0781300 OSNPB_020781300 ENOG411E3VV BET11 Q9M2J9 BET11_ARATH Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a) FUNCTION: Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles (By similarity). {ECO:0000250}. 13973 Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a) endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2085360; AT3G58170 Bet1-like SNARE Os02g0820700 protein (Putative Bet1/Sft1-related SNARE) (cDNA clone:006-304-D04, full insert sequence) (cDNA clone:J033116I15, full insert sequence),Os02g0820700 protein (Putative Bet1/Sft1-related SNARE) (cDNA clone:001-034-H06, full insert sequence) (cDNA clone:001-038-B06, full insert sequence) Q6K710,Q6K711 Q6K710_ORYSJ,Q6K711_ORYSJ P0474F11.16-2 Os02g0820700 OJ1119_A01.1-2 OsJ_08905 OSNPB_020820700,P0474F11.16-1 Os02g0820700 OJ1119_A01.1-1 OSNPB_020820700 ENOG411E3VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat-containing protein NA NA NA NA NA NA NA ENOG411E3VT MEE6.12 Q9FLM4 Q9FLM4_ARATH At5g41050 (Pollen Ole e 1 allergen and extensin family protein) 18967 At5g41050 (Pollen Ole e 1 allergen and extensin family protein) locus:2162986; AT5G41050 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411E3VU A0A1P8B3L8,A0A1P8B3M4,A0A1P8B3N1,F4JG87,F4JG88 A0A1P8B3L8_ARATH,A0A1P8B3M4_ARATH,A0A1P8B3N1_ARATH,F4JG87_ARATH,F4JG88_ARATH Ankyrin repeat family protein 67882,78412,69044,72939,76395 Ankyrin repeat family protein integral component of membrane [GO:0016021]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031],integral component of membrane [GO:0016021]; membrane [GO:0016020]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; signal transduction [GO:0007165] locus:2128726; AT4G03490 Ankyrin repeat-containing protein Os09g0334900 protein A0A0P0XK95 A0A0P0XK95_ORYSJ Os09g0334900 OSNPB_090334900 ENOG411DWEW HKT1 Q84TI7 HKT1_ARATH Sodium transporter HKT1 (AtHKT1) athtk1-3 mutants have no obvious phenotypic abnormalities when grown in typical greenhouse conditions. But across a range of different hydroponically-provided sodium concentrations these mutants accumulate less sodium in their roots than wild type plants and more sodium in their leaves than wild type plants. Accordingly the roots of these mutants are less sensitive to salt in root elongation assays and the leaves are hypersensitive to salt in plant growth assays. FUNCTION: Sodium transporter protein, which plays a central role in plant tolerance to salt. Upon prolongated exposure to high concentrations, Na(+) translocates from the roots to the transpiring leaves where it can increase to toxic level. Involved in Na(+) recirculation from shoots to roots, probably by mediating Na(+) loading into the phloem sap in shoots and unloading in roots, thereby removing large amounts of Na(+) from the shoot. Does not transport K(+) but regulates K(+) nutrient status via its ability to facilitate Na(+) homeostasis. Probably not involved in root uptake of Na(+). {ECO:0000269|PubMed:10759522, ECO:0000269|PubMed:11698666, ECO:0000269|PubMed:11959905, ECO:0000269|PubMed:12417304, ECO:0000269|PubMed:12727868, ECO:0000269|PubMed:15347798, ECO:0000269|PubMed:15486089}. MISCELLANEOUS: In contrast to K(+) channel proteins, it lacks a conserved Gly at position 68, explaining why it does not act as a K(+) transporter. ARA:GQT-206-MONOMER;MetaCyc:MONOMER-14577; 57450 Sodium transporter HKT1 (AtHKT1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079]; potassium ion transport [GO:0006813]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; sodium ion transport [GO:0006814] TISSUE SPECIFICITY: Highly expressed in roots. Expressed in flowers, leaves and stems. Expressed in the vascular tissues of every organs. In roots, leaves and flower peduncles, it is only expressed in the phloem tissues. Not expressed in root peripheral cells. {ECO:0000269|PubMed:10759522, ECO:0000269|PubMed:12727868}. locus:2122749; AT4G10310 transporter Probable cation transporter HKT6 (OsHKT6),Cation transporter HKT8 (OsHKT8) (HKT1;5) Q6H501,Q0JNB6 HKT6_ORYSJ,HKT8_ORYSJ HKT6 Os02g0175000 LOC_Os02g07830 OSJNBa0073A21.31,HKT8 HKT1.5 SKC1 Os01g0307500 LOC_Os01g20160 OsJ_01471 OSJNBb0022N24.25 OSJNOa173H09.1 FUNCTION: Probable cation transporter. May be involved in regulation of K(+)/Na(+) homeostasis.,FUNCTION: Seems to act as a sodium transporter, which regulates K(+)/Na(+) homeostasis in shoots by recirculating sodium from shoots to roots. {ECO:0000250}. MISCELLANEOUS: Substitution of Pro-140, Arg-184, His-332 and Leu-395 in salt-tolerant cultivars indica Nona Bokra and Pokkali confers enhanced sodium transport activity. ENOG411EIWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF427) NA NA NA NA NA NA NA ENOG411EEBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M23 NA NA NA NA NA NA NA ENOG411E9N3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like NA NA NA NA NA NA NA ENOG411E9NV EDA5 Q9SS65 Q9SS65_ARATH At3g03650 (Exostosin family protein) (Glycosyltransferase) (T12J13.7 protein) (Uncharacterized protein At3g03650) 57145 At3g03650 (Exostosin family protein) (Glycosyltransferase) (T12J13.7 protein) (Uncharacterized protein At3g03650) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transferase activity [GO:0016740]; megagametogenesis [GO:0009561]; pollen tube development [GO:0048868] locus:2096439; AT3G03650 Exostosin family NA NA NA NA NA NA NA ENOG411EAC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os06g0703200 protein (Fragment) A0A0P0X0T9 A0A0P0X0T9_ORYSJ Os06g0703200 OSNPB_060703200 ENOG411EAC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch NA NA NA NA NA NA NA ENOG411EAC1 Q9SZZ9,Q9FFV5,Q9C9X9,Q9LU49,Q94K34,Q9FFV4,Q6RF47,F4JTC8,F4J1B0 FBK89_ARATH,FK130_ARATH,FBK52_ARATH,FK123_ARATH,FBK51_ARATH,FK116_ARATH,Q6RF47_ARATH,F4JTC8_ARATH,F4J1B0_ARATH F-box/kelch-repeat protein At4g25710,F-box/kelch-repeat protein At5g38670,F-box/kelch-repeat protein At3g08810,F-box/kelch-repeat protein At5g51250,F-box/kelch-repeat protein At3g06570,Putative F-box/kelch-repeat protein At5g38680,Galactose oxidase/kelch repeat superfamily protein 43939,33832,38493,41475,44558,40502,28762,30820,18373 F-box/kelch-repeat protein At4g25710,F-box/kelch-repeat protein At5g38670,F-box/kelch-repeat protein At3g08810,F-box/kelch-repeat protein At5g51250,F-box/kelch-repeat protein At3g06570,Putative F-box/kelch-repeat protein At5g38680,Galactose oxidase/kelch repeat superfamily protein locus:2131396;,locus:2159893;,locus:2077863;,locus:2176262;,locus:2084264;,locus:2159813;,locus:2063766;,locus:2075059; AT4G25710,AT5G38670,AT3G08810,AT5G51250,AT3G06570,AT5G38680,AT2G03460,AT3G09750 FBOX NA NA NA NA NA NA NA ENOG411EAC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411EAC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxin-fold anticodon binding domain NA NA NA NA NA NA NA ENOG411EAC6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF604 Os03g0269700 protein (Fragment),Os03g0269601 protein Q0DT44,A0A0P0VVX1 Q0DT44_ORYSJ,A0A0P0VVX1_ORYSJ Os03g0269700 OSNPB_030269700,Os03g0269601 OSNPB_030269601 ENOG411EAC5 Q9SUE1,A0A1P8B553,A0A1P8B587 Q9SUE1_ARATH,A0A1P8B553_ARATH,A0A1P8B587_ARATH Trichohyalin-like protein (DUF3444) (Uncharacterized protein AT4g27980) (Uncharacterized protein T13J8.90),Trichohyalin-like protein (DUF3444) 65396,69603,69516 Trichohyalin-like protein (DUF3444) (Uncharacterized protein AT4g27980) (Uncharacterized protein T13J8.90),Trichohyalin-like protein (DUF3444) locus:2132997; AT4G27980 Domain of unknown function (DUF3444) NA NA NA NA NA NA NA ENOG411EAC4 CEL1 O49296,Q9CAC1 GUN4_ARATH,GUN8_ARATH Endoglucanase 4 (EC 3.2.1.4) (Endo-1,4-beta glucanase 4),Endoglucanase 8 (EC 3.2.1.4) (Cellulase 1) (AtCEL1) (Endo-1,4-beta glucanase 8) FUNCTION: Required for cellulose formation of the cell wall. {ECO:0000269|PubMed:12602880}. ARA:AT1G23210-MONOMER;,ARA:AT1G70710-MONOMER; 3.2.1.4 54630,54610 Endoglucanase 4 (EC 3.2.1.4) (Endo-1,4-beta glucanase 4),Endoglucanase 8 (EC 3.2.1.4) (Cellulase 1) (AtCEL1) (Endo-1,4-beta glucanase 8) extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],chloroplast [GO:0009507]; extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall modification involved in multidimensional cell growth [GO:0042547]; cellulose catabolic process [GO:0030245] TISSUE SPECIFICITY: Expressed in young expanding tissues. Expressed in xylem cells, young epidermal cells and newly formed cell walls. {ECO:0000269|PubMed:16758197, ECO:0000269|PubMed:9290636}. locus:2028015;,locus:2033600; AT1G23210,AT1G70710 Glycosyl hydrolase NA NA NA NA NA NA NA ENOG411EACZ RH6 Q94BV4 RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 (EC 3.6.4.13) FUNCTION: ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping. {ECO:0000250}. R-ATH-430039; 3.6.4.13 60421 DEAD-box ATP-dependent RNA helicase 6 (EC 3.6.4.13) cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleolus [GO:0005730]; P-body [GO:0000932]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; cytoplasmic mRNA processing body assembly [GO:0033962]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; regulation of translation [GO:0006417]; RNA secondary structure unwinding [GO:0010501] locus:2050715; AT2G45810 DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411EACY CYP79C1 F4IF38 F4IF38_ARATH Cytochrome P450, family 79, subfamily C, polypeptide 1 62387 Cytochrome P450, family 79, subfamily C, polypeptide 1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; glucosinolate biosynthetic process [GO:0019761]; indoleacetic acid biosynthetic process [GO:0009684] locus:2207355; AT1G79370 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EACX Q9M2H9,F4J4A1,Q9M2J2,Q9M2H8,Q4PSK6,F4J5T4,F4J5T5 MCC26_ARATH,MCC14_ARATH,MCC18_ARATH,MCC27_ARATH,Q4PSK6_ARATH,F4J5T4_ARATH,F4J5T5_ARATH MATH domain and coiled-coil domain-containing protein At3g58370 (RTM3-like protein At3g58370),MATH domain and coiled-coil domain-containing protein At3g44800 (RTM3-like protein At3g44800),MATH domain and coiled-coil domain-containing protein At3g58240 (RTM3-like protein At3g58240),MATH domain and coiled-coil domain-containing protein At3g58380 (RTM3-like protein At3g58380),Meprin and TRAF-like domain-containing protein (TRAF-like superfamily protein),TRAF-like superfamily protein 37065,38987,36427,34918,32362,30236,20939 MATH domain and coiled-coil domain-containing protein At3g58370 (RTM3-like protein At3g58370),MATH domain and coiled-coil domain-containing protein At3g44800 (RTM3-like protein At3g44800),MATH domain and coiled-coil domain-containing protein At3g58240 (RTM3-like protein At3g58240),MATH domain and coiled-coil domain-containing protein At3g58380 (RTM3-like protein At3g58380),Meprin and TRAF-like domain-containing protein (TRAF-like superfamily protein),TRAF-like superfamily protein locus:2085400;,locus:2101640;,locus:2085335;,locus:2085405;,locus:2085435; AT3G58370,AT3G44800,AT3G58240,AT3G58380,AT3G58290 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EACS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0089 NA NA NA NA NA NA NA ENOG411EACR ERF088 Q3E703 ERF88_ARATH Ethylene-responsive transcription factor ERF088 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 25011 Ethylene-responsive transcription factor ERF088 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2010346; AT1G12890 AP2 NA NA NA NA NA NA NA ENOG411EACQ CRK35,CRK34 Q9LDQ3,Q8LPI0 CRK35_ARATH,CRK34_ARATH Putative cysteine-rich receptor-like protein kinase 35 (Cysteine-rich RLK35) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 34 (Cysteine-rich RLK34) 2.7.11.- 74027,29583 Putative cysteine-rich receptor-like protein kinase 35 (Cysteine-rich RLK35) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 34 (Cysteine-rich RLK34) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],extracellular region [GO:0005576] locus:2123111;,locus:5019474824; AT4G11530,AT4G11521 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EACP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EACW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like Calmodulin-binding protein, putative, expressed (Os12g0556500 protein) (cDNA clone:002-165-B11, full insert sequence) Q2QNS0 Q2QNS0_ORYSJ Os12g0556500 LOC_Os12g36940 Os12g0556500 OSNPB_120556500 ENOG411EACV F28J7.21 Q9SGI4,Q9S7Q5 Q9SGI4_ARATH,Q9S7Q5_ARATH F28J7.20 protein,F1C9.34 protein (F28J7.21 protein) (Vacuolar sorting-associated protein (DUF946)) 64439,66531 F28J7.20 protein,F1C9.34 protein (F28J7.21 protein) (Vacuolar sorting-associated protein (DUF946)) locus:2078728;,locus:2078723; AT3G01870,AT3G01880 Plant protein of unknown function (DUF946) NA NA NA NA NA NA NA ENOG411EACU NAC59 Q9LJW3 NAC59_ARATH NAC domain-containing protein 59 (ANAC059) (AtNAC3) (Protein ORE1 SISTER1) DISRUPTION PHENOTYPE: Delayed senescence accompanied by a small delay in flowering time. {ECO:0000269|PubMed:21303842}. FUNCTION: Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. 35826 NAC domain-containing protein 59 (ANAC059) (AtNAC3) (Protein ORE1 SISTER1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; leaf senescence [GO:0010150]; positive regulation of leaf senescence [GO:1900057]; positive regulation of sequence-specific DNA binding transcription factor activity [GO:0051091]; response to hydrogen peroxide [GO:0042542]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Age-dependent accumulation. First observed in young seedlings in cotyledons and regularly in the tip regions of very young leaves. Accumulates strongly in older leaf parts at the senescence onset. In flowers, present in mature organs such as old sepals, petals, old stamens, mature anthers, and pollen grains. Confined to floral organ abscission zone of mature flowers. Also observed in roots. {ECO:0000269|PubMed:21303842}. TISSUE SPECIFICITY: Mostly expressed in root cortex, phloem, atrichoblast and quiescent center (QC), and, to a lower extent, in root endodermis, xylem, pericycle, columella and lateral root cap (LRC) (PubMed:16581911). Expressed in roots, cotyledons, very young leaves, senescing leaves, mature flowers and pollen (PubMed:21303842). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:21303842}. locus:2087037; AT3G29035 arabidopsis nac domain containing protein NA NA NA NA NA NA NA ENOG411EACT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sigma-54 interaction domain NA NA NA NA NA NA NA ENOG411EACK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EACJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EACI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EACH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0619700 protein A0A0P0YCB7 A0A0P0YCB7_ORYSJ Os12g0619700 OSNPB_120619700 ENOG411EACN CYP705A24 Q9SGP1 Q9SGP1_ARATH Cytochrome P450 (Cytochrome P450, family 705, subfamily A, polypeptide 24) (F3M18.13) ARA:AT1G28430-MONOMER; 59268 Cytochrome P450 (Cytochrome P450, family 705, subfamily A, polypeptide 24) (F3M18.13) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2032564; AT1G28430 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EACM MEE20 O80772,O80771,A0A1P8B2K1,F4IGX9,B3H4B1 O80772_ARATH,O80771_ARATH,A0A1P8B2K1_ARATH,F4IGX9_ARATH,B3H4B1_ARATH Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) (Uncharacterized protein At2g34230),Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) (Uncharacterized protein At2g34220),Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629),Uncharacterized protein Complete male gametophyte defective; Female gametophyte defective-S. McCormick-2009 83886,83089,87104,79685,78835 Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) (Uncharacterized protein At2g34230),Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) (Uncharacterized protein At2g34220),Ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629),Uncharacterized protein hydrolase activity [GO:0016787],nucleus [GO:0005634]; hydrolase activity [GO:0016787]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555] locus:2040869;,locus:2040849;,locus:2040889; AT2G34230,AT2G34220,AT2G34240 Protein of unknown function (DUF627) NA NA NA NA NA NA NA ENOG411EACC Q9LMD1 Q9LMD1_ARATH F14D16.11 (Myb-like HTH transcriptional regulator family protein) (Uncharacterized protein At1g18960) 34219 F14D16.11 (Myb-like HTH transcriptional regulator family protein) (Uncharacterized protein At1g18960) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; stamen development [GO:0048443] locus:2011276; AT1G18960 Inherit from KOG: Myblike DNAbinding domain containing protein NA NA NA NA NA NA NA ENOG411EACB MYB122 Q9C9C8 MY122_ARATH Transcription factor MYB122 (Myb-related protein 122) (AtMYB122) DISRUPTION PHENOTYPE: Low levels of indolic glucosinolates and loss of responses to brassinosteroids. {ECO:0000269|PubMed:23580754}. FUNCTION: Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. 37255 Transcription factor MYB122 (Myb-related protein 122) (AtMYB122) nucleus [GO:0005634]; plasmodesma [GO:0009506]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to insect [GO:0009625]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. locus:2031531; AT1G74080 myb domain protein 122 NA NA NA NA NA NA NA ENOG411EACA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EACG BPS1 Q9LMM6 BPS1_ARATH Protein BPS1, chloroplastic (Protein BYPASS 1) Double mutants were indistinguishable from bps1 single mutants.,Growth of bps1-2 mutants on CPTA-supplemented medium resulted in partial rescue of both leaf and root defects. bps1-2 mutants grown on control growth medium have small radialized leaves with very little vascular tissue and very short misshapen knotted-looking roots. By contrast bps1-2 mutants grown on CPTA-supplemented medium produced larger flattened leaves that contained primary and secondary veins and smooth elongated roots.,Mutant roots were abnormal; primary and lateral roots were short root hairs formed close to the root apex and root defects were most severe when plants were grown at low temperature.,Mutants produced two radially symmetric organs in the place of leaves; these organs were typically devoid of vascular tissue and lacked trichomes. Prolonged 16°C growth did not result in additional organs being produced indicating that shoot meristem (SAM) activity was also lost. Mutants grown at 22°C showed a similar albeit less severe phenotype. The first leaf pair was slightly larger and flatter than those of 16°C-grown mutants and contained some vascular tissue and additional radial organs were produced by the SAM. Mutants grown at 29°C showed an even less-severe phenotype; these plants produced flattened irregularly shaped leaves with slightly lobed margins and an abnormal vein pattern.,Under high light conditions (approximately 200 μE.m-2.sec-1) CPTA-treated seedlings were completely photobleached and mutants showed rescue of both leaf and root development. Under moderate (approximately 100 μE.m-2.sec-1) and low (30 μE.m-2.sec-1) light intensities seedlings are incompletely photobleached but leaf and root development continue to show partial rescue.,In double mutant seedlings grown on CPTA a partial rescue of the bps1 phenotype was observed. Few radially symmetric organs with very little vascular tissue and no trichomes; Short primary and lateral roots; Root hairs form close to root apex; Phenotype enhanced at low temperature-L. Sieburth-2004 FUNCTION: Required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development. {ECO:0000269|PubMed:15458645, ECO:0000269|PubMed:17217459}. MISCELLANEOUS: The mobile signal produced in absence of BPS1 is neither abscisic acid nor the MAX-dependent hormone. 38584 Protein BPS1, chloroplastic (Protein BYPASS 1) chloroplast [GO:0009507]; plasma membrane [GO:0005886]; embryo development ending in seed dormancy [GO:0009793]; root development [GO:0048364]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, leaves, flowers and siliques. {ECO:0000269|PubMed:15458645}. locus:2025406; AT1G01550 Protein of unknown function (DUF793) NA NA NA NA NA NA NA ENOG411EACF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain Os07g0583800 protein A3BLK9 A3BLK9_ORYSJ Os07g0583800 OsJ_24902 OSNPB_070583800 ENOG411EACE Q9LVR5 MCU3_ARATH Calcium uniporter protein 3, mitochondrial FUNCTION: Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria. Constitutes a pore-forming and calcium-conducting subunit. Mitochondrial calcium homeostasis plays key roles in cellular physiology and regulates cell bioenergetics, cytoplasmic calcium signals and activation of cell death pathways. {ECO:0000250|UniProtKB:Q8NE86}. R-ATH-8949215; 36766 Calcium uniporter protein 3, mitochondrial integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; calcium channel activity [GO:0005262]; uniporter activity [GO:0015292] locus:2173629; AT5G66650 Protein of unknown function DUF607 NA NA NA NA NA NA NA ENOG411EACD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411EJFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH NA NA NA NA NA NA NA ENOG411E7MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0164400 protein Q6H6W0 Q6H6W0_ORYSJ Os02g0164400 OJ1661_C12.18 OSJNBa0023I17.1 OSNPB_020164400 ENOG411DQR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RCD1-SRO-TAF4 (RST) plant domain Os03g0230300 protein (Poly polymerase catalytic domain containing protein, expressed) Q10PL7 Q10PL7_ORYSJ Os03g0230300 LOC_Os03g12820 Os03g0230300 OSNPB_030230300 ENOG411DQR8 ATHB-51,HB51 Q9LZR0,A0A1P8BAG8 ATB51_ARATH,A0A1P8BAG8_ARATH Putative homeobox-leucine zipper protein ATHB-51 (HD-ZIP protein ATHB-51) (Homeodomain transcription factor ATHB-51),Homeobox 51 No significant meristem identity defects or flowering time defects. Rosette leaves are divided at the base and form one or two leaflets.,Enhanced meristem identity defect with respect to single lfy-10 mutant. More secondary inflorescences formed more bracts formed. No enhancement of floral homeotic defects of lfy-10.,lmi1-1 enhances meristem identity defects strong increase in number of secondary inflorescences and bracts compared with lfy-10/+. Abnormal leaf morphology; Base of rosette divided into leaflets-D. Wagner-2006 FUNCTION: Putative transcription factor. {ECO:0000250}. 26840,22606 Putative homeobox-leucine zipper protein ATHB-51 (HD-ZIP protein ATHB-51) (Homeodomain transcription factor ATHB-51),Homeobox 51 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; bract formation [GO:0010434]; floral meristem determinacy [GO:0010582]; leaf morphogenesis [GO:0009965]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. locus:2144578; AT5G03790 homeobox-leucine zipper protein ATHB-51-like NA NA NA NA NA NA NA ENOG411DQR7 MAK10 A0A1P8B1N2,A0A1P8B1L2,F4IRD2,F4IRD3 A0A1P8B1N2_ARATH,A0A1P8B1L2_ARATH,F4IRD2_ARATH,F4IRD3_ARATH MAK10 homologue 80420,73642,81013,82803 MAK10 homologue locus:2041897; AT2G11000 N-alpha-acetyltransferase 35 NatC auxiliary Os02g0803250 protein A0A0P0VR91 A0A0P0VR91_ORYSJ Os02g0803250 OSNPB_020803250 ENOG411DQR6 Q8VZH1,Q8GZ28 Q8VZH1_ARATH,Q8GZ28_ARATH At3g23510/MEE5_5 (Cyclopropane-fatty-acyl-phospholipid synthase),Cyclopropane-fatty-acyl-phospholipid synthase (Putative cyclopropane-fatty-acyl-phospholipid synthase) ARA:AT3G23530-MONOMER;,ARA:AT3G23510-MONOMER; 98062,97881 At3g23510/MEE5_5 (Cyclopropane-fatty-acyl-phospholipid synthase),Cyclopropane-fatty-acyl-phospholipid synthase (Putative cyclopropane-fatty-acyl-phospholipid synthase) oxidoreductase activity [GO:0016491] locus:2088070;,locus:2088712; AT3G23530,AT3G23510 Cyclopropane fatty acid synthase Cyclopropane fatty acid synthase, putative, expressed (Os12g0267200 protein) (cDNA clone:J023008H02, full insert sequence),Os07g0474600 protein (Fragment) Q2QUD2,Q0D6J1 Q2QUD2_ORYSJ,Q0D6J1_ORYSJ Os12g0267200 LOC_Os12g16650 Os12g0267200 OSNPB_120267200,Os07g0474600 Os07g0474600 OSNPB_070474600 ENOG411DQR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: keratin type II cytoskeletal Os01g0656600 protein (Fragment) A0A0N7KDF9 A0A0N7KDF9_ORYSJ Os01g0656600 OSNPB_010656600 ENOG411DQR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DQR2 Q94K91 Q94K91_ARATH Endoplasmic reticulum vesicle transporter protein (Uncharacterized protein At3g22280) (Uncharacterized protein At3g22290) 40093 Endoplasmic reticulum vesicle transporter protein (Uncharacterized protein At3g22280) (Uncharacterized protein At3g22290) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2087817; AT3G22290 Endoplasmic reticulum-Golgi intermediate compartment protein Os03g0784400 protein (Serologically defined breast cancer antigen NY-BR-84, putative, expressed) (cDNA clone:J033130D12, full insert sequence),Os03g0784400 protein (Fragment) Q10CF7,A0A0N7KI60 Q10CF7_ORYSJ,A0A0N7KI60_ORYSJ OSJNBb0093E13.1 LOC_Os03g57100 Os03g0784400 OsJ_12848 OSNPB_030784400,Os03g0784400 OSNPB_030784400 ENOG411DQR1 Q9C6S6,F4IAZ1 PPR67_ARATH,F4IAZ1_ARATH Putative pentatricopeptide repeat-containing protein At1g31840,Tetratricopeptide repeat (TPR)-like superfamily protein 94166,90788 Putative pentatricopeptide repeat-containing protein At1g31840,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2034528; AT1G31840 PPR repeat NA NA NA NA NA NA NA ENOG411DQR0 SEI3,SEI2 Q8L615,F4I340 SEI3_ARATH,SEI2_ARATH Seipin-3 (AtSEIPIN3),Seipin-2 (AtSEIPIN2) FUNCTION: Involved in lipid metabolism and lipid droplet (LD) morphology, number, and size. Supports the formation of small-sized LDs and modulates triacylglycerol accumulation. Induces probably a reorganization of the endoplasmic reticulum into LD-forming domains. {ECO:0000269|PubMed:26362606}. 57416,59677 Seipin-3 (AtSEIPIN3),Seipin-2 (AtSEIPIN2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; lipid metabolic process [GO:0006629]; lipid particle organization [GO:0034389]; lipid storage [GO:0019915] TISSUE SPECIFICITY: Expressed in seeds, seedlings, leaves, stems and roots. Not detected in flowers. {ECO:0000269|PubMed:26362606}. locus:2040884;,locus:2019347; AT2G34380,AT1G29760 Putative adipose-regulatory protein (Seipin) Os09g0534000 protein Q69SG4 Q69SG4_ORYSJ Os09g0534000 Os09g0534000 OJ1112_E07.18 OSNPB_090534000 ENOG411DQRN CCT1 P28769 TCPA_ARATH T-complex protein 1 subunit alpha (TCP-1-alpha) (CCT-alpha) (Chaperonin CCT1) FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. {ECO:0000305}. R-ATH-390471;R-ATH-6814122; 59229 T-complex protein 1 subunit alpha (TCP-1-alpha) (CCT-alpha) (Chaperonin CCT1) chaperonin-containing T-complex [GO:0005832]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077] locus:2087605; AT3G20050 T-complex protein 1 subunit alpha OSJNBa0010H02.6 protein (Os04g0551800 protein) (cDNA clone:J033035C24, full insert sequence) Q7FAT6 Q7FAT6_ORYSJ Os04g0551800 Os04g0551800 OsJ_15705 OSJNBa0010H02.6 OSNPB_040551800 FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. ENOG411DQRM emb1427 Q0WPZ0,A0A1P8AUV6,A0A1P8AUZ6,A0A1P8AME7,A0A1P8AMD7,A0A1P8AUZ0,F4HUK8 Q0WPZ0_ARATH,A0A1P8AUV6_ARATH,A0A1P8AUZ6_ARATH,A0A1P8AME7_ARATH,A0A1P8AMD7_ARATH,A0A1P8AUZ0_ARATH,F4HUK8_ARATH Gamma-tubulin complex component Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000256|RuleBase:RU363050}. 111440,110356,77805,94400,93855,110000,109211 Gamma-tubulin complex component equatorial microtubule organizing center [GO:0000923]; gamma-tubulin ring complex [GO:0008274]; microtubule [GO:0005874]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; structural constituent of cytoskeleton [GO:0005200]; cytoplasmic microtubule organization [GO:0031122]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly [GO:0090307],cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule organizing center [GO:0005815]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; microtubule nucleation [GO:0007020] locus:2016334;,locus:2030417; AT1G80260,AT1G20570 gamma-tubulin complex component Gamma-tubulin complex component (Fragment) A0A0P0VJP8,A0A0P0YC23 A0A0P0VJP8_ORYSJ,A0A0P0YC23_ORYSJ Os02g0523300 OSNPB_020523300,Os12g0606100 OSNPB_120606100 FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000256|RuleBase:RU363050}. ENOG411DQRK ALPHAC-AD,ALPHA-ADR Q8LPK4,Q8LPL6 AP2A2_ARATH,AP2A1_ARATH AP-2 complex subunit alpha-2 (Adaptor protein complex AP-2 subunit alpha-2) (Adaptor-related protein complex 2 subunit alpha-2) (Alpha-adaptin 2) (Clathrin assembly protein complex 2 alpha-C large chain) (At-aC-Ad) (At-alphaC-Ad),AP-2 complex subunit alpha-1 (Adaptor protein complex AP-2 subunit alpha-1) (Adaptor-related protein complex 2 subunit alpha-1) (Alpha-adaptin 1) (Clathrin assembly protein complex 2 alpha large chain 1) (At-a-Ad) (At-alpha-Ad) FUNCTION: Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The complex binds polyphosphoinositides. {ECO:0000269|PubMed:15054111}.,FUNCTION: Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The complex binds polyphosphoinositides (By similarity). {ECO:0000250}. R-ATH-6798695;R-ATH-8856825;R-ATH-8856828; Endocytosis (04144),Huntington's disease (05016),Synaptic vesicle cycle (04721),Endocrine and other factor-regulated calcium reabsorption (04961) 112299,112150 AP-2 complex subunit alpha-2 (Adaptor protein complex AP-2 subunit alpha-2) (Adaptor-related protein complex 2 subunit alpha-2) (Alpha-adaptin 2) (Clathrin assembly protein complex 2 alpha-C large chain) (At-aC-Ad) (At-alphaC-Ad),AP-2 complex subunit alpha-1 (Adaptor protein complex AP-2 subunit alpha-1) (Adaptor-related protein complex 2 subunit alpha-1) (Alpha-adaptin 1) (Clathrin assembly protein complex 2 alpha large chain 1) (At-a-Ad) (At-alpha-Ad) clathrin adaptor complex [GO:0030131]; clathrin-coated pit [GO:0005905]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; protein transporter activity [GO:0008565]; endocytosis [GO:0006897]; intracellular protein transport [GO:0006886],clathrin adaptor complex [GO:0030131]; clathrin-coated pit [GO:0005905]; membrane [GO:0016020]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; protein transporter activity [GO:0008565]; endocytosis [GO:0006897]; intracellular protein transport [GO:0006886] locus:2157510;,locus:2162419; AT5G22780,AT5G22770 AP-2 complex subunit Os03g0112101 protein (Fragment) A0A0P0VSF7 A0A0P0VSF7_ORYSJ Os03g0112101 OSNPB_030112101 ENOG411DQRJ CYP81D1 Q9FG65,A0A1P8BF72 C81D1_ARATH,A0A1P8BF72_ARATH Cytochrome P450 81D1 (EC 1.14.-.-),Cytochrome p450 81d1 ARA:AT5G36220-MONOMER; 1.14.-.- 56724,40037 Cytochrome P450 81D1 (EC 1.14.-.-),Cytochrome p450 81d1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2183597; AT5G36220 cytochrome P450 NA NA NA NA NA NA NA ENOG411DQRI SMU2 O48713 SMU2_ARATH Suppressor of mec-8 and unc-52 protein homolog 2 (AtSMU-2) (Protein RED-like) (RNA splicing protein SMU2) DISRUPTION PHENOTYPE: No visible phenotype, but slower growth. {ECO:0000269|PubMed:19734266}. Slow growth; Incomplete penetrance of abnormal cotyledon number and heavy seeds-B. Larkins-2009 FUNCTION: Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development. {ECO:0000269|PubMed:19734266}. 66331 Suppressor of mec-8 and unc-52 protein homolog 2 (AtSMU-2) (Protein RED-like) (RNA splicing protein SMU2) nucleus [GO:0005634]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Highly expressed in seedlings at 7 days after germination, young flowers before anthesis and developing siliques. Expressed at lower levels in roots, expanding leaves, open flowers, dry seeds and inflorescences. Not detected in senescing leaves. {ECO:0000269|PubMed:19734266}. locus:2066221; AT2G26460 RED-like protein N-terminal region Expressed protein (Os11g0146700 protein) (cDNA clone:J023086C01, full insert sequence),Expressed protein (Os12g0143400 protein),Os11g0146700 protein (Fragment) Q2RAL9,Q2QXT7,A0A0N7KSF4 Q2RAL9_ORYSJ,Q2QXT7_ORYSJ,A0A0N7KSF4_ORYSJ Os11g0146700 LOC_Os11g04950 Os11g0146700 OsJ_32953 OSNPB_110146700,Os12g0143400 LOC_Os12g04940 Os12g0143400 OsJ_35195 OSNPB_120143400,Os11g0146700 OSNPB_110146700 ENOG411DQRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain Os11g0291500 protein,Os11g0291000 protein Q0IT92,A0A0P0Y1K3 Q0IT92_ORYSJ,A0A0P0Y1K3_ORYSJ Os11g0291500 Os11g0291500 OSNPB_110291500,Os11g0291000 OSNPB_110291000 ENOG411DQRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os10g0153900 protein (Protein kinase domain containing protein, expressed),Os10g0157400 protein (Protein kinase domain containing protein) (cDNA, clone: J075187A19, full insert sequence),Os10g0156000 protein (Protein kinase domain containing protein),Os10g0154500 protein (Protein kinase domain containing protein, expressed),Os02g0492300 protein,Os10g0156200 protein Q8S672,Q33AY5,Q8SB66,Q8S667,A0A0P0VJ77,A0A0N7KRG4 Q8S672_ORYSJ,Q33AY5_ORYSJ,Q8SB66_ORYSJ,Q8S667_ORYSJ,A0A0P0VJ77_ORYSJ,A0A0N7KRG4_ORYSJ Os10g0153900 LOC_Os10g06510 Os10g0153900 OSJNBa0034B05.21 OSNPB_100153900,Os10g0157400 LOC_Os10g06950 Os10g0157400 OSJNBa0036D19.3 OSNPB_100157400,Os10g0156000 LOC_Os10g06780 OsJ_30768 OSJNBa0004E08.15 OSNPB_100156000,Os10g0154500 LOC_Os10g06580 Os10g0154500 OSJNAa0034B05.3 OSJNBa0034B05.26 OSNPB_100154500,Os02g0492300 OSNPB_020492300,Os10g0156200 OSNPB_100156200 ENOG411DQRE NFYA1 Q9LXV5 NFYA1_ARATH Nuclear transcription factor Y subunit A-1 (AtNF-YA-1) (Protein EMBRYO DEFECTIVE 2220) (Transcriptional activator HAP2A) Female gametophyte lethality. Embryo defective; 50% defective seeds-D. Meinke-2002 FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 30038 Nuclear transcription factor Y subunit A-1 (AtNF-YA-1) (Protein EMBRYO DEFECTIVE 2220) (Transcriptional activator HAP2A) CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; microgametogenesis [GO:0055046]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; seed development [GO:0048316]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. locus:2182245; AT5G12840 nuclear transcription factor Y subunit NA NA NA NA NA NA NA ENOG411DQRC Q9ZVW5,F4INZ9 Q9ZVW5_ARATH,F4INZ9_ARATH 1-aminocyclopropane-1-carboxylate oxidase (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 16622,41949 1-aminocyclopropane-1-carboxylate oxidase (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein oxidoreductase activity [GO:0016491],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2063626;,locus:2040575; AT2G06960,AT2G36690 2-oxoglutarate Fe(II)-dependent dioxygenase-like Os09g0570800 protein (Fragment),Os08g0560000 protein (Fragment) Q0IZG2,A0A0P0XJT4 Q0IZG2_ORYSJ,A0A0P0XJT4_ORYSJ Os09g0570800 OSNPB_090570800,Os08g0560000 OSNPB_080560000 ENOG411DQRB iqd21 Q9ASW3,F4IWT1 Q9ASW3_ARATH,F4IWT1_ARATH AT3g49260/F2K15_120 (Guard cell associated protein) (IQ-domain 21) (SF16-like protein),IQ-domain 21 52094,52194 AT3g49260/F2K15_120 (Guard cell associated protein) (IQ-domain 21) (SF16-like protein),IQ-domain 21 locus:2082896; AT3G49260 IQ-domain NA NA NA NA NA NA NA ENOG411DQRW Q8H1E5 Q8H1E5_ARATH Myosin heavy chain-related protein (Uncharacterized protein At4g32190) 90019 Myosin heavy chain-related protein (Uncharacterized protein At4g32190) synaptonemal complex [GO:0000795]; reciprocal meiotic recombination [GO:0007131] locus:2116500; AT4G32190 NA Os02g0186400 protein (Putative ZipA) Q6ZIG6 Q6ZIG6_ORYSJ Os02g0186400 OJ1073_F05.14 OJ1115_B01.25 OSNPB_020186400 ENOG411DQRV NLP3 Q8RUF8 NILP3_ARATH Omega-amidase, chloroplastic (EC 3.5.1.3) (Nitrilase-like protein 3) DISRUPTION PHENOTYPE: 2-fold higher levels of alpha-ketosuccinamate and 3-fold higher levels of alpha-hydroxysuccinamate. {ECO:0000269|PubMed:24461228}. FUNCTION: Omega-amidase involved in the metabolism of asparagine. Probably also closely coupled with glutamine transamination in the methionine salvage cycle. Can use alpha-ketosuccinamate and alpha-hydroxysuccinamate as substrates, producing respectively oxaloacetate and malate, or alpha-ketoglutaramate, producing alpha-ketoglutarate. {ECO:0000269|PubMed:24461228}. ARA:AT5G12040-MONOMER; R-ATH-6798695; 3.5.1.3 40330 Omega-amidase, chloroplastic (EC 3.5.1.3) (Nitrilase-like protein 3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; omega-amidase activity [GO:0050152]; zinc ion binding [GO:0008270]; malate metabolic process [GO:0006108]; nitrogen compound metabolic process [GO:0006807]; oxaloacetate metabolic process [GO:0006107] locus:2143039; AT5G12040 Omega-amidase Hydrolase, carbon-nitrogen family protein, expressed (Os03g0175600 protein) (cDNA clone:006-212-E08, full insert sequence) Q10R10 Q10R10_ORYSJ Os03g0175600 LOC_Os03g07910 Os03g0175600 OsJ_09619 OSNPB_030175600 ENOG411DQRS B3GALT2,B3GALT4,B3GALT3 A8MRC7,Q8LEJ9,Q9ZV71 B3GT2_ARATH,B3GT4_ARATH,B3GT3_ARATH Probable beta-1,3-galactosyltransferase 2 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 4 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 3 (EC 2.4.1.-) FUNCTION: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.- 46162,46020,46483 Probable beta-1,3-galactosyltransferase 2 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 4 (EC 2.4.1.-),Probable beta-1,3-galactosyltransferase 3 (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486] locus:2207225;,locus:2116452;,locus:2062545; AT1G05170,AT4G26940,AT2G32430 Beta-13-galactosyltransferase Hexosyltransferase (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) (Fragment) Q6F2F5,A0A0N7KHK1 Q6F2F5_ORYSJ,A0A0N7KHK1_ORYSJ LOC_Os03g38050 Os03g0577500 OsJ_11528 OSJNBa0083K01.31 OSNPB_030577500,Os03g0577500 OSNPB_030577500 ENOG411DQRR F4I9P9,F4I9P8,F4I9P7 F4I9P9_ARATH,F4I9P8_ARATH,F4I9P7_ARATH DNA-binding bromodomain-containing protein 64921,64850,66002 DNA-binding bromodomain-containing protein DNA binding [GO:0003677] locus:2823472; AT1G58025 BROMO Os06g0355500 protein (cDNA clone:J013044H02, full insert sequence),DNA-binding protein family-like (Os08g0109500 protein) Q0DCB5,Q6ZC68 Q0DCB5_ORYSJ,Q6ZC68_ORYSJ Os06g0355500 Os06g0355500 OSNPB_060355500,Os08g0109500 Os08g0109500 OSNPB_080109500 P0007D08.15 ENOG411E2EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os12g0587200 protein) (cDNA clone:J013070M16, full insert sequence),Os12g0565000 protein (Fragment),Os12g0590400 protein,Expressed protein (Os12g0589400 protein),Os12g0589200 protein,Os01g0239300 protein (Fragment) Q2QMX3,Q0IMK2,Q0IM80,Q2QMV6,A0A0P0YC81,A0A0P0V0T7 Q2QMX3_ORYSJ,Q0IMK2_ORYSJ,Q0IM80_ORYSJ,Q2QMV6_ORYSJ,A0A0P0YC81_ORYSJ,A0A0P0V0T7_ORYSJ Os12g0587200 LOC_Os12g39710 Os12g0587200 OSNPB_120587200,Os12g0565000 Os12g0565000 OSNPB_120565000,Os12g0590400 Os12g0590400 OsJ_36704 OSNPB_120590400,Os12g0589400 LOC_Os12g39880 Os12g0589400 OSNPB_120589400,Os12g0589200 OSNPB_120589200,Os01g0239300 OSNPB_010239300 ENOG411E2EX MQB2.4 Q84MC3,Q8GZ51,F4K7S5 Q84MC3_ARATH,Q8GZ51_ARATH,F4K7S5_ARATH At3g47980 (Integral membrane HPP family protein) (Uncharacterized protein At3g47970) (mRNA, clone: RAFL23-14-H18) (mRNA, clone: RAFL25-12-O07),At5g62720 (Integral membrane HPP family protein) (Uncharacterized protein At5g62720/MQB2_20),Integral membrane HPP family protein 26969,25828,21013 At3g47980 (Integral membrane HPP family protein) (Uncharacterized protein At3g47970) (mRNA, clone: RAFL23-14-H18) (mRNA, clone: RAFL25-12-O07),At5g62720 (Integral membrane HPP family protein) (Uncharacterized protein At5g62720/MQB2_20),Integral membrane HPP family protein integral component of membrane [GO:0016021],chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021] locus:2097945;,locus:2170673; AT3G47980,AT5G62720 integral membrane HPP family protein HPP family protein, expressed (Os03g0684700 protein) (cDNA clone:J013152H14, full insert sequence) Q10F18 Q10F18_ORYSJ Os03g0684700 LOC_Os03g48030 Os03g0684700 OsJ_12140 OSNPB_030684700 ENOG411E2ER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family OSJNBa0079A21.8 protein (Os04g0545700 protein) Q7XU98 Q7XU98_ORYSJ OSJNBa0079A21.8 Os04g0545700 OSNPB_040545700 ENOG411E2ES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os12g0203000 protein C7JAB9 C7JAB9_ORYSJ Os12g0203000 Os12g0203000 OSNPB_120203000 ENOG411E2EP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydroquinone glucosyltransferase-like Glycosyltransferase (EC 2.4.1.-) Q6I5X0 Q6I5X0_ORYSJ Os05g0215300 OJ1076_H08.4 OSNPB_050215300 ENOG411E2EQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SERPIN Putative non-inhibitory serpin-Z11 (OrysaZ11),Putative non-inhibitory serpin-10 (OrysaZ10),Os04g0533800 protein Q7XMK0,Q7XMK1,A0A0P0WCS7 SPZ11_ORYSJ,SPZ10_ORYSJ,A0A0P0WCS7_ORYSJ Os04g0533700 LOC_Os04g45110 OsJ_014933 OSJNBb0039L24.18,Os04g0533700 LOC_Os04g45110 OSJNBb0039L24.17,Os04g0533800 OSNPB_040533800 ENOG411E2EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0573900 protein (Fragment) A0A0P0WR57 A0A0P0WR57_ORYSJ Os05g0573900 OSNPB_050573900 ENOG411E2ET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peptide transporter PTR3-A-like NA NA NA NA NA NA NA ENOG411E2EU F14P22.220 Q9M2F4,Q8GXR6 Q9M2F4_ARATH,Q8GXR6_ARATH Sequence-specific DNA binding transcription factor (Uncharacterized protein F14P22.220),Sequence-specific DNA binding transcription factor (Uncharacterized protein At3g58630) (Uncharacterized protein At3g58630/F14P22_220) 34795,36046 Sequence-specific DNA binding transcription factor (Uncharacterized protein F14P22.220),Sequence-specific DNA binding transcription factor (Uncharacterized protein At3g58630) (Uncharacterized protein At3g58630/F14P22_220) transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2076401; AT3G58630 Inherit from KOG: Transcription factor NA NA NA NA NA NA NA ENOG411E2EJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os10g0109700 protein,Os03g0286700 protein A0A0P0XQX3,A0A0P0VWV3 A0A0P0XQX3_ORYSJ,A0A0P0VWV3_ORYSJ Os10g0109700 OSNPB_100109700,Os03g0286700 OSNPB_030286700 ENOG411E2EH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Mate efflux family protein Os07g0418200 protein (Fragment) A0A0P0X4Z7 A0A0P0X4Z7_ORYSJ Os07g0418200 OSNPB_070418200 ENOG411E2EN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox associated leucine zipper NA NA NA NA NA NA NA ENOG411E2EM MYB101 O80883 MB101_ARATH Transcription factor MYB101 (Myb-related protein 101) (AtM1) (AtMYB101) (Protein ABNORMAL SHOOT 7) DISRUPTION PHENOTYPE: Hyposensitivity to abscisic acid (ABA) (PubMed:17217461). Reduced expression levels of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. The triple mutant myb33 myb65 myb101 has a male sterility and exhibits slower protein storage vacuoles (PSVs) vacuolation rate in aleurone layers upon seed germination (PubMed:20699403). Reduced production of abnormal pollen grains with misarranged male germ unit (MGU) (PubMed:22101548). The triple mutant myb97 myb101 myb120 is impaired in pollen tube growth arrest and subsequent sperm cell release in the female gametophyte thus leading to a drastically reduced fertility. Altered pollen tube-specific gene expression (PubMed:23791732, PubMed:24278028). {ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. FUNCTION: Transcription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}. 54437 Transcription factor MYB101 (Myb-related protein 101) (AtM1) (AtMYB101) (Protein ABNORMAL SHOOT 7) nucleus [GO:0005634]; pollen tube [GO:0090406]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; gibberellic acid mediated signaling pathway [GO:0009740]; pollen development [GO:0009555]; pollen sperm cell differentiation [GO:0048235]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of programmed cell death [GO:0043068]; positive regulation of transcription, DNA-templated [GO:0045893]; protein storage vacuole organization [GO:1990019]; regulation of gene expression [GO:0010468]; regulation of leaf morphogenesis [GO:1901371]; regulation of pollen tube growth [GO:0080092]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Present in a small patch of cells on the innermost side of the hypocotyl hook of the germinating seedling, in the subapical pith cells of plants growing vegetatively, in a similar zone of expanding cells both in developing inflorescence stems, and below mature flowers and elongating siliques (PubMed:11743113). Accumulates in the pollen tube nucleus during pollen tube growth through the pistil (PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:23791732}. TISSUE SPECIFICITY: Present mostly in flowers, siliques and floral shoot tips (PubMed:11743113, PubMed:25268707). Expression is restricted to the subapical pith cells of both vegetative and flowering plants and to the hypocotyl hook (PubMed:11743113). Expressed in pollen grains and pollen tube (PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}. locus:2060241; AT2G32460 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E2EB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vps52 / Sac2 family Os10g0488300 protein (Vps52/Sac2 family protein, putative, expressed) (cDNA clone:J023110C18, full insert sequence) Q337J1 Q337J1_ORYSJ LOC_Os10g34680 Os10g0488300 OSNPB_100488300 ENOG411E2EC AVT1D Q8GYS4 AVT1D_ARATH Amino acid transporter AVT1D (AtAvt1D) R-ATH-425393;R-ATH-888590; 59667 Amino acid transporter AVT1D (AtAvt1D) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2185158; AT5G02180 amino acid transporter NA NA NA NA NA NA NA ENOG411E2EA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411E2EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411E2EG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain MLA6 protein-like (Os01g0603100 protein) (cDNA clone:J033046J06, full insert sequence),Os01g0350300 protein,Os11g0657900 protein,Os09g0357400 protein,Os10g0124400 protein Q5ZBA8,A0A0P0V2I0,A0A0P0Y5P8,A0A0P0XKM7,A0A0P0XR33 Q5ZBA8_ORYSJ,A0A0P0V2I0_ORYSJ,A0A0P0Y5P8_ORYSJ,A0A0P0XKM7_ORYSJ,A0A0P0XR33_ORYSJ Os01g0603100 B1085F01.25 OSNPB_010603100 P0681B11.5,Os01g0350300 OSNPB_010350300,Os11g0657900 OSNPB_110657900,Os09g0357400 OSNPB_090357400,Os10g0124400 OSNPB_100124400 ENOG411E2ED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Typical P-type R2R3 Myb protein NA NA NA NA NA NA NA ENOG411E2EE Q9ZWA1 C3H2_ARATH Zinc finger CCCH domain-containing protein 2 (AtC3H2) (Protein SOMNUS) (SOM) Wild-type seeds germinate when PHYB is activated by red light but not when PHYB is inactivated by far-red light. som mutant seeds germinate at rates of almost 100% irrespective of light conditions. Germination insensitive to darkness and far-red light-G. Choi-2008 FUNCTION: Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. MISCELLANEOUS: Plants lacking SOM germinate in darkness, independently of various light regimens. 43614 Zinc finger CCCH domain-containing protein 2 (AtC3H2) (Protein SOMNUS) (SOM) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of seed germination [GO:0010187]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}. locus:2024112; AT1G03790 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411E2E8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ripening-related protein 2-like NA NA NA NA NA NA NA ENOG411E2E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDA1/CD39 (nucleoside phosphatase) family NA NA NA NA NA NA NA ENOG411E2E2 Q8VXY0 Q8VXY0_ARATH Expressed protein (Uncharacterized protein At2g36145) 19908 Expressed protein (Uncharacterized protein At2g36145) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535] locus:505006299; AT2G36145 NA Os01g0862200 protein (cDNA clone:001-025-F01, full insert sequence),Os01g0862200 protein Q94CW5,A0A0P0VAP1 Q94CW5_ORYSJ,A0A0P0VAP1_ORYSJ P0423B08.8-1 P0679C12.49-1 Os01g0862200 OsJ_04159 OSNPB_010862200,Os01g0862200 OSNPB_010862200 ENOG411E2E3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411E2E0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os02g0198000 protein (cDNA clone:J013118O05, full insert sequence),Os01g0148500 protein (cDNA clone:J023098D02, full insert sequence),Os11g0143700 protein,Os12g0139800 protein (Fragment) Q6H741,Q94JK5,A0A0P0XYJ8,A0A0P0Y6Q2 Q6H741_ORYSJ,Q94JK5_ORYSJ,A0A0P0XYJ8_ORYSJ,A0A0P0Y6Q2_ORYSJ Os02g0198000 OsJ_05764 OSNPB_020198000 P0026H03.11,Os01g0148500 Os01g0148500 OSNPB_010148500 P0434B04.17,Os11g0143700 OSNPB_110143700,Os12g0139800 OSNPB_120139800 ENOG411E2E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caspase domain NA NA NA NA NA NA NA ENOG411E2E7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAG domain NA NA NA NA NA NA NA ENOG411E2E4 Q9M0T4 Q9M0T4_ARATH AT4G08460 protein (RING domain protein) (Uncharacterized protein AT4g08460) 31301 AT4G08460 protein (RING domain protein) (Uncharacterized protein AT4g08460) locus:2133519; AT4G08460 Protein of unknown function (DUF1644) NA NA NA NA NA NA NA ENOG411ED8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ED8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7MU Q8GYA5 Q8GYA5_ARATH Uncharacterized protein 11989 Uncharacterized protein locus:4515103074; AT3G15518 NA NA NA NA NA NA NA NA ENOG411E7MB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E9Z0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain Os03g0426300 protein A0A0P0VYW7 A0A0P0VYW7_ORYSJ Os03g0426300 OSNPB_030426300 ENOG411E9Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0314100 protein A0A0P0XL14 A0A0P0XL14_ORYSJ Os09g0314100 OSNPB_090314100 ENOG411E9Z2 TOL4 Q6NQK0,A0A1P8AQI5,A0A1P8AQI3 TOL4_ARATH,A0A1P8AQI5_ARATH,A0A1P8AQI3_ARATH TOM1-like protein 4,Target of Myb protein 1 FUNCTION: Might contribute to the loading of the ESCRT machinery. {ECO:0000305|PubMed:16488176}. 49255,46605,39623 TOM1-like protein 4,Target of Myb protein 1 cytoplasm [GO:0005737]; membrane [GO:0016020]; intracellular protein transport [GO:0006886],intracellular [GO:0005622]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:24699223}. locus:2025297; AT1G76970 VHS NA NA NA NA NA NA NA ENOG411E9Z3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ion channel NA NA NA NA NA NA NA ENOG411E9ZD AHL29,AHL27 Q9C9K7,Q9S7C9 AHL29_ARATH,AHL27_ARATH AT-hook motif nuclear-localized protein 29 (Protein SUPPRESSOR OF PHYB-4#3),AT-hook motif nuclear-localized protein 27 (DNA-binding protein ESCAROLA) (Protein ORESARA 7) DISRUPTION PHENOTYPE: AHL27 and AHL29 double mutant exhibit a long hypocotyl phenotype in the light. {ECO:0000269|PubMed:18088311}. Delayed leaf senescence slightly shorter petioles round and enlarged leaves an increased number of inflorescences a late flowering phenotype and increased biomass. FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Acts redundantly with AHL18, AHL22 and AHL27 in the regulation of flowering and regulation of the hypocotyl elongation (PubMed:19517252). Acts redundantly with AHL27/ESC to modulate hypocotyl growth inhibition in response to light (PubMed:18088311). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:18088311, ECO:0000269|PubMed:19517252}.,FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (PubMed:17971039, PubMed:19517252). Negatively regulates plant innate immunity (PTI) to pathogens through the down-regulation of the PAMP-triggered FRK1 expression (PubMed:20738724). Acts redundantly with AHL18, AHL22 and AHL29 in the regulation of flowering and regulation of the hypocotyl elongation (PubMed:19517252). Acts as a chromatin remodeling factor that negatively regulates the leaf senescence (PubMed:17971039). Acts redundantly with AHL29/SOB3 to modulate hypocotyl growth inhibition in response to light (PubMed:18088311). {ECO:0000269|PubMed:17971039, ECO:0000269|PubMed:18088311, ECO:0000269|PubMed:19517252, ECO:0000269|PubMed:20738724}. MISCELLANEOUS: Overexpression of AHL29 results in altered cell expansion dynamics and delayed senescence. {ECO:0000269|PubMed:18088311}.,MISCELLANEOUS: Overexpression of AHL27 results in a decreased flg22-induced expression of FRK1 (PubMed:20738724). Overexpression causes also delay of leaf senescence, late flowering and modified leaf development (PubMed:10759496, PubMed:17971039). {ECO:0000269|PubMed:10759496, ECO:0000269|PubMed:17971039, ECO:0000269|PubMed:20738724}. 30615,31842 AT-hook motif nuclear-localized protein 29 (Protein SUPPRESSOR OF PHYB-4#3),AT-hook motif nuclear-localized protein 27 (DNA-binding protein ESCAROLA) (Protein ORESARA 7) nucleus [GO:0005634]; AT DNA binding [GO:0003680]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; photomorphogenesis [GO:0009640]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; AT DNA binding [GO:0003680]; double-stranded DNA binding [GO:0003690]; histone binding [GO:0042393]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chromatin organization [GO:0006325]; flower development [GO:0009908]; innate immune response [GO:0045087]; leaf senescence [GO:0010150]; negative regulation of innate immune response [GO:0045824]; photomorphogenesis [GO:0009640]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in the hypocotyl and the vascular tissue of seedling. {ECO:0000269|PubMed:18088311}. locus:2011701;,locus:2037350; AT1G76500,AT1G20900 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411E9ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E9ZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9ZA GOLS5,GOLS10,GOLS6,GolS10 Q9FFA1,F4KED2,Q8H1S1,A0A1P8BDG7 GOLS5_ARATH,GOLSA_ARATH,GOLS6_ARATH,A0A1P8BDG7_ARATH Galactinol synthase 5 (AtGolS5) (GolS-5) (EC 2.4.1.123),Galactinol synthase 10 (AtGolS10) (GolS-10) (EC 2.4.1.123),Galactinol synthase 6 (AtGolS6) (GolS-6) (EC 2.4.1.123),Hexosyltransferase (EC 2.4.1.-) FUNCTION: Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. May promote plant stress tolerance (By similarity). {ECO:0000250}. 2.4.1.123,2.4.1.- 38472,37364,38851,27774 Galactinol synthase 5 (AtGolS5) (GolS-5) (EC 2.4.1.123),Galactinol synthase 10 (AtGolS10) (GolS-10) (EC 2.4.1.123),Galactinol synthase 6 (AtGolS6) (GolS-6) (EC 2.4.1.123),Hexosyltransferase (EC 2.4.1.-) cytoplasm [GO:0005737]; inositol 3-alpha-galactosyltransferase activity [GO:0047216]; metal ion binding [GO:0046872]; galactose metabolic process [GO:0006012],inositol 3-alpha-galactosyltransferase activity [GO:0047216]; galactose metabolic process [GO:0006012] locus:2172848;,locus:2145855;,locus:2136829; AT5G23790,AT5G30500,AT4G26250 Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. May promote plant stress tolerance (By similarity) NA NA NA NA NA NA NA ENOG411E9ZB Q9FM92,Q9LQM1,Q9FGR8,Q1PDI7,A0A1P8B9Q3 FBD22_ARATH,FBD39_ARATH,FBD19_ARATH,Q1PDI7_ARATH,A0A1P8B9Q3_ARATH Putative FBD-associated F-box protein At5g56390,Probable FBD-associated F-box protein At1g32375,Putative FBD-associated F-box protein At5g50270,FBD-like domain family protein,F-box/RNI-like/FBD-like domains-containing protein 48557,47653,46194,30130,34578 Putative FBD-associated F-box protein At5g56390,Probable FBD-associated F-box protein At1g32375,Putative FBD-associated F-box protein At5g50270,FBD-like domain family protein,F-box/RNI-like/FBD-like domains-containing protein locus:2161013;,locus:505006162;,locus:504954952; AT5G56390,AT1G32375,AT5G50270,AT5G56325 Inherit from euNOG: f-box family Os08g0270000 protein A0A0P0XDY9 A0A0P0XDY9_ORYSJ Os08g0270000 OSNPB_080270000 ENOG411E9ZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411E9ZM Q9FMD7 Y5659_ARATH Probable inactive receptor kinase At5g16590 FUNCTION: Might be involved in early recognition of growth promoting fungi. Appears to be specific for P.indica. {ECO:0000269|PubMed:17397506}. MISCELLANEOUS: Induction of At5g16590 is not observed in mutants devoid of PII-2, another leucine-rich repeat protein normally associated with the plasma membrane microdomains. 67463 Probable inactive receptor kinase At5g16590 integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; response to symbiotic fungus [GO:0009610] locus:2174190; AT5G16590 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411E9ZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9ZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E9ZJ PHL1 Q8GUN5 PHL1_ARATH Protein PHR1-LIKE 1 (Myb-like transcription factor 1) DISRUPTION PHENOTYPE: No effect on phosphate starvation responsiveness, due to the redundancy with PHR1. {ECO:0000269|PubMed:20838596}. FUNCTION: Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. 46221 Protein PHR1-LIKE 1 (Myb-like transcription factor 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. locus:2148720; AT5G29000 MYB family transcription factor NA NA NA NA NA NA NA ENOG411E9ZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9ZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C1 domain NA NA NA NA NA NA NA ENOG411E9ZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactose binding lectin domain NA NA NA NA NA NA NA ENOG411E9ZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os07g0131600 protein (Putative hexose carrier protein HEX6) (cDNA clone:J013149H14, full insert sequence),Os07g0131250 protein,Os07g0131200 protein Q8H4I7,C7J4X0,A0A0N7KMW2 Q8H4I7_ORYSJ,C7J4X0_ORYSJ,A0A0N7KMW2_ORYSJ OJ1606_D04.111 Os07g0131600 OSJNBa0088O14.48 OSNPB_070131600,Os07g0131250 Os07g0131250 OSNPB_070131250,Os07g0131200 OSNPB_070131200 ENOG411E9ZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Microtubule associated protein (MAP65/ASE1 family) Os05g0552900 protein (Fragment) Q0DG49 Q0DG49_ORYSJ Os05g0552900 Os05g0552900 OSNPB_050552900 ENOG411E9ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multidrug pheromone exporter MDR family ABC transporter family NA NA NA NA NA NA NA ENOG411E9ZS MSRA1,MSRA3,PMSR1 Q9FKF7,Q9LY14,A0A1P8BF28 MSRA1_ARATH,MSRA3_ARATH,A0A1P8BF28_ARATH Peptide methionine sulfoxide reductase A1 (AtMSRA1) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase),Peptide methionine sulfoxide reductase A3 (AtMSRA3) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase),Peptidemethionine sulfoxide reductase 1 Dwarf under short days-P. Mullineaux-2004 FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May prevent cellular oxidative damage due to light exposure. MSRA family specifically reduces the MetSO S-enantiomer. {ECO:0000269|PubMed:10806242}. 1.8.4.11 22898,22545,26185 Peptide methionine sulfoxide reductase A1 (AtMSRA1) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase),Peptide methionine sulfoxide reductase A3 (AtMSRA3) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (Protein-methionine-S-oxide reductase),Peptidemethionine sulfoxide reductase 1 cytosol [GO:0005829]; peptide-methionine (S)-S-oxide reductase activity [GO:0008113],cytosol [GO:0005829]; peptide-methionine (S)-S-oxide reductase activity [GO:0008113]; response to light stimulus [GO:0009416],peptide-methionine (S)-S-oxide reductase activity [GO:0008113] TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, and at lower levels in roots, stems and flowers (at protein level). {ECO:0000269|PubMed:10806242}. locus:2151646;,locus:2183419; AT5G61640,AT5G07470 sulfoxide reductase NA NA NA NA NA NA NA ENOG411E9ZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN NA NA NA NA NA NA NA ENOG411E9ZY Q9SUT1 Q9SUT1_ARATH At4g11300 (ROH1, putative (DUF793)) (Uncharacterized protein AT4g11300) 40860 At4g11300 (ROH1, putative (DUF793)) (Uncharacterized protein AT4g11300) locus:2128318; AT4G11300 Protein of unknown function (DUF793) NA NA NA NA NA NA NA ENOG411E9ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411E7MJ Q67YQ7 Q67YQ7_ARATH Uncharacterized protein At4g34420 14898 Uncharacterized protein At4g34420 locus:6530298224; AT4G34419 NA NA NA NA NA NA NA NA ENOG411E7MI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0756300 protein (cDNA clone:J023026P15, full insert sequence) Q8RUL5 Q8RUL5_ORYSJ Os01g0756300 Os01g0756300 OJ1414_E05.1 OsJ_03501 OSNPB_010756300 P0503C12.46 ENOG411EJM6 AtREN1 Q67XK8 Q67XK8_ARATH Putative DNA-binding protein (Winged helix-turn-helix transcription repressor DNA-binding protein) 17224 Putative DNA-binding protein (Winged helix-turn-helix transcription repressor DNA-binding protein) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2204750; AT1G77570 HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411DYN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411ECQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF677) Putative UPF0496 protein 5,Os10g0359200 protein Q7XFE1,B9G5C1 U496E_ORYSJ,B9G5C1_ORYSJ Os10g0359200 LOC_Os10g21540 OsJ_030007 OSJNBb0076H04.9,Os10g0359200 OsJ_31216 OSNPB_100359200 ENOG411ECQ4 COBL9 Q9FJ13 COBL9_ARATH COBRA-like protein 9 Short wide burst hairs,Root hairs have mostly very short root hairs indicating a defect in the transition to rapid tip growth which is required to fully develop the hair structure. Short root hairs-N. Smirnoff-2006 73136 COBRA-like protein 9 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; cell tip growth [GO:0009932]; cellulose microfibril organization [GO:0010215]; root epidermal cell differentiation [GO:0010053]; root hair cell differentiation [GO:0048765] TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:12376623}. locus:2155889; AT5G49270 COBRA-like protein NA NA NA NA NA NA NA ENOG411ECQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EFC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFC9 Q94A92 Q94A92_ARATH At1g75770/F10A5_10 26002 At1g75770/F10A5_10 locus:2005604; AT1G75770 NA NA NA NA NA NA NA NA ENOG411EFC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os05g0477500 protein (cDNA clone:002-174-A03, full insert sequence) Q75GN5 Q75GN5_ORYSJ Os05g0477500 OSJNBa0018K15.4 OSNPB_050477500 ENOG411EFC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0349550 protein A0A0P0W8T8 A0A0P0W8T8_ORYSJ Os04g0349550 OSNPB_040349550 ENOG411EFC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EFC6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M20/M25/M40 NA NA NA NA NA NA NA ENOG411EFC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 1C1 (OsCASPL1C1) Q9LI17 CSPLB_ORYSJ Os01g0237000 LOC_Os01g13560 OsJ_001011 P0708G02.36 ENOG411EFCH MBG8.5 Q5BPG5,A0A1P8BA29 Q5BPG5_ARATH,A0A1P8BA29_ARATH CTD small phosphatase-like protein FUNCTION: Involved in the regulation of plant growth. {ECO:0000269|PubMed:24567189}. MISCELLANEOUS: Plants overexpressing VUP4 exhibit severe dwarfism. {ECO:0000269|PubMed:24567189}. 18063,15168 CTD small phosphatase-like protein locus:2160160; AT5G54790 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EFCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: uhrf1 binding protein NA NA NA NA NA NA NA ENOG411EFCC OL3 Q43284 OLEO3_ARATH Oleosin 14.9 kDa FUNCTION: May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth (By similarity). {ECO:0000250}. 14852 Oleosin 14.9 kDa extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915]; sexual reproduction [GO:0019953] DEVELOPMENTAL STAGE: Expression peaks early in embryonic development and decreases during later stages. {ECO:0000269|PubMed:8756606}. locus:2176212; AT5G51210 Oleosin NA NA NA NA NA NA NA ENOG411EFCX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0313700 protein,Os05g0513600 protein (cDNA clone:002-118-G01, full insert sequence),Os05g0324000 protein,Os05g0324000 protein (Fragment) Q5WMV2,Q5TKG8,Q5W6U1,A0A0P0WKS3 Q5WMV2_ORYSJ,Q5TKG8_ORYSJ,Q5W6U1_ORYSJ,A0A0P0WKS3_ORYSJ Os05g0313700 OJ1308_D01.2 OSNPB_050313700,Os05g0513600 B1155G07.14 OSNPB_050513600,Os05g0324000 Os05g0324000 OSNPB_050324000 P0018A03.8,Os05g0324000 OSNPB_050324000 ENOG411EFCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HtrA serine peptidase NA NA NA NA NA NA NA ENOG411EFCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox domain Os07g0619600 protein A0A0P0X9D8 A0A0P0X9D8_ORYSJ Os07g0619600 OSNPB_070619600 ENOG411EFCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EM9J Q9M073 Q9M073_ARATH At4g32870 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At4g32870) 17877 At4g32870 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At4g32870) locus:2134123; AT4G32870 Polyketide cyclase / dehydrase and lipid transport Os01g0724700 protein Q5JM62 Q5JM62_ORYSJ Os01g0724700 Os01g0724700 OsJ_03313 OSNPB_010724700 P0022F10.27 P0042A10.2 ENOG411EJMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-box zinc finger NA NA NA NA NA NA NA ENOG411EKPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EKPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoglycerate mutase NA NA NA NA NA NA NA ENOG411EKPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKPN Q56XX3,A0A1P8AXS3 Y2215_ARATH,A0A1P8AXS3_ARATH Uncharacterized protein At2g02148,PPR containing protein 48283,45732 Uncharacterized protein At2g02148,PPR containing protein locus:6530298174; AT2G02148 NA NA NA NA NA NA NA NA ENOG411EKPJ F4JUM8 F4JUM8_ARATH Pentatricopeptide repeat (PPR) superfamily protein 84675 Pentatricopeptide repeat (PPR) superfamily protein locus:2129480; AT4G14200 NA NA NA NA NA NA NA NA ENOG411EKPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKPT B3H6Q9 B3H6Q9_ARATH Uncharacterized protein 11810 Uncharacterized protein locus:4515102785; AT2G01554 NA Os02g0324700 protein (Fragment) A0A0N7KF71 A0A0N7KF71_ORYSJ Os02g0324700 OSNPB_020324700 ENOG411EKPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAP2 superfamily NA NA NA NA NA NA NA ENOG411EKPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAP2 superfamily Os02g0704500 protein (cDNA clone:001-029-A12, full insert sequence) (cDNA clone:006-206-B10, full insert sequence) Q0DYB4 Q0DYB4_ORYSJ Os02g0704500 Os02g0704500 OSNPB_020704500 ENOG411EKPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAP2 superfamily NA NA NA NA NA NA NA ENOG411EKPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0544000 protein),Os11g0544000 protein Q2R2Z9,Q0ISA3 Q2R2Z9_ORYSJ,Q0ISA3_ORYSJ Os11g0544000 LOC_Os11g34130 OSNPB_110544000,Os11g0544000 OSNPB_110544000 ENOG411EKPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0899500 protein (cDNA clone:J013116L24, full insert sequence),Os01g0899500 protein Q5N847,A0A0N7KE88 Q5N847_ORYSJ,A0A0N7KE88_ORYSJ P0506A10.38-1 Os01g0899500 OSNPB_010899500,Os01g0899500 OSNPB_010899500 ENOG411EKPR F5A18.4 Q9S812 Q9S812_ARATH At1g70780 (At1g70780/F5A18_4) (F15H11.3 protein) (Uncharacterized protein F5A18.4) 15352 At1g70780 (At1g70780/F5A18_4) (F15H11.3 protein) (Uncharacterized protein F5A18.4) locus:2033620; AT1G70780 NA NA NA NA NA NA NA NA ENOG411EKPS Q84JS3 Q84JS3_ARATH Uncharacterized protein At1g23150 15491 Uncharacterized protein At1g23150 locus:2201180; AT1G23150 NA NA NA NA NA NA NA NA ENOG411EKPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dolichyldiphosphatase 1 Os03g0288700 protein (PAP2 superfamily protein, expressed) (cDNA clone:002-170-D09, full insert sequence) Q10MZ3 Q10MZ3_ORYSJ LOC_Os03g17940 Os03g0288700 OsJ_10434 OSNPB_030288700 ENOG411EKPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0372400 protein (cDNA clone:J033042L23, full insert sequence) B7ERU0 B7ERU0_ORYSJ Os09g0372400 OSNPB_090372400 ENOG411EKPZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PUB domain Os02g0504500 protein (Ubiquitin-associated (UBA)/TS-N domain-containing protein-like) (cDNA clone:J033115G09, full insert sequence),Os02g0504500 protein (Fragment) Q6K653,A0A0N7KFC3 Q6K653_ORYSJ,A0A0N7KFC3_ORYSJ Os02g0504500 Os02g0504500 OJ1003_F04.28 OsJ_06843 OSNPB_020504500,Os02g0504500 OSNPB_020504500 ENOG411EKP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411EKP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease III domain Ribonuclease 3-like protein 2 (EC 3.1.26.-) (Ribonuclease III-like protein 2) (RNase III-like protein 2) Q6ATG6 RTL2_ORYSJ Os05g0271300 LOC_Os05g18850 OJ1653_D06.9 OSJNBb0061M13.3 FUNCTION: Cleaves double-stranded RNA (dsRNA). {ECO:0000250}. ENOG411EKP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ser Thr protein phosphatase family protein Os03g0260100 protein C7IZW8 C7IZW8_ORYSJ Os03g0260100 OSNPB_030260100 ENOG411EKP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Calcineurin-related phosphoesterase-like (Os01g0894000 protein) (cDNA clone:J023075F19, full insert sequence),Calcineurin-related phosphoesterase-like protein (Os07g0274100 protein) (cDNA clone:J013161E16, full insert sequence),Os01g0894000 protein (Fragment) Q5JLV7,Q6YU42,A0A0P0VBL0 Q5JLV7_ORYSJ,Q6YU42_ORYSJ,A0A0P0VBL0_ORYSJ Os01g0894000 Os01g0894000 B1078G07.41 OsJ_04384 OSNPB_010894000,Os07g0274100 Os07g0274100 B1029H08.11 OsJ_23820 OSJNBb0032G22.26 OSNPB_070274100,Os01g0894000 OSNPB_010894000 ENOG411EKP8 PUR5 Q05728 PUR5_ARATH Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic (EC 6.3.3.1) (AIR synthase) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) Embryo defective; Preglobular-D. Meinke-2009 PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2. ARA:AT3G55010-MONOMER; 6.3.3.1 41504 Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic (EC 6.3.3.1) (AIR synthase) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; phosphoribosylformylglycinamidine cyclo-ligase activity [GO:0004641]; 'de novo' IMP biosynthetic process [GO:0006189] locus:2097203; AT3G55010 phosphoribosylformylglycinamidine cyclo-ligase Os03g0831500 protein (Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial, putative, expressed) (Putative 5'-phosphoribosyl-5-aminoimidazole synthetase) (cDNA clone:J033031B01, full insert sequence) Q850Z8 Q850Z8_ORYSJ OSJNBb0027B08.7 LOC_Os03g61600 Os03g0831500 OSJNBa0078D06.21 OSNPB_030831500 ENOG411E186 DYW1 P0C7R1 PPR74_ARATH Pentatricopeptide repeat-containing protein DWY1, chloroplastic (DYW-domain protein 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the mutant plants lack editing of the ndhD-1 site. {ECO:0000269|PubMed:23001034}. FUNCTION: Plays a major role in single RNA editing events in chloroplasts. Acts as a site-recognition transacting factor involved in the edition of the site 1 of ndhD (ndhD-1 site corresponding to cytidine-2), which is a plastid-encoded subunit of the NADH-plastoquinone oxidoreductase. The interaction with CRR4 is required for its function in editing the ndhD-1 site. {ECO:0000269|PubMed:23001034}. MISCELLANEOUS: Unlike other RNA editing factors, DYW1 does not contain identifiable PPR repeats but does contain E(+) and DYW motifs. Therefore its association with CCR4, which lacks E(+) and DYW motifs, but does contain PPR repeats, is required for its function in RNA editing. {ECO:0000305|PubMed:23001034}. 26735 Pentatricopeptide repeat-containing protein DWY1, chloroplastic (DYW-domain protein 1) chloroplast [GO:0009507]; plastid [GO:0009536]; zinc ion binding [GO:0008270]; chloroplast mRNA modification [GO:1900871]; chloroplast RNA modification [GO:1900865]; mRNA processing [GO:0006397] locus:2015378; AT1G47580 Inherit from KOG: Pentatricopeptide repeat-containing protein Expressed protein (Os03g0767700 protein) (cDNA clone:J033050D05, full insert sequence) Q7Y0E1 Q7Y0E1_ORYSJ OSJNBa0079B15.3 OSJNBb0106M04.20 LOC_Os03g55840 Os03g0767700 OsJ_12720 OSNPB_030767700 ENOG411E187 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Glycosyltransferase (EC 2.4.2.-) (Fragment) A0A0P0VSW9 A0A0P0VSW9_ORYSJ Os03g0129800 OSNPB_030129800 ENOG411E182 PER62,MIJ24.50 Q9FKA4,F4KEH2 PER62_ARATH,F4KEH2_ARATH Peroxidase 62 (Atperox P62) (EC 1.11.1.7) (ATP24a),Peroxidase superfamily protein FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G39580-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34134,25718 Peroxidase 62 (Atperox P62) (EC 1.11.1.7) (ATP24a),Peroxidase superfamily protein extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; defense response to fungus [GO:0050832]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Mainly expressed in roots. {ECO:0000269|Ref.5}. locus:2164865; AT5G39580 Cationic peroxidase NA NA NA NA NA NA NA ENOG411E183 DOF3.6,OBP3 Q9M2U1,Q3EAJ2,F4IWU4 DOF36_ARATH,Q3EAJ2_ARATH,F4IWU4_ARATH Dof zinc finger protein DOF3.6 (AtDOF3.6) (OBF-binding protein 3),OBF-binding protein 3 FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. 35522,38886,40726 Dof zinc finger protein DOF3.6 (AtDOF3.6) (OBF-binding protein 3),OBF-binding protein 3 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; photomorphogenesis [GO:0009640]; positive regulation of transcription, DNA-templated [GO:0045893] TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}. locus:2099921; AT3G55370 Obf-binding protein 3 NA NA NA NA NA NA NA ENOG411E180 O22772,Q8GYR6,F4JHK5 O22772_ARATH,Q8GYR6_ARATH,F4JHK5_ARATH Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At4g02550) (Uncharacterized protein T10P11.16),Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At4g02550/T10P11_16),Myb/SANT-like DNA-binding domain protein 35761,32388,37674 Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At4g02550) (Uncharacterized protein T10P11.16),Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At4g02550/T10P11_16),Myb/SANT-like DNA-binding domain protein DNA binding [GO:0003677],DNA binding [GO:0003677]; regulation of defense response [GO:0031347] locus:2132363; AT4G02550 NA NA NA NA NA NA NA NA ENOG411E181 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0299700 protein,Os07g0421000 protein,Os08g0299600 protein (cDNA clone:002-123-A07, full insert sequence) Q6YVN3,Q7EY22,B7F006 Q6YVN3_ORYSJ,Q7EY22_ORYSJ,B7F006_ORYSJ Os08g0299700 P0045D08.111 OSJNBa0063H21.130 OSNPB_080299700,B1123E10.108 Os07g0421000 OsJ_23997 OSNPB_070421000,Os08g0299600 OsJ_26812 OSNPB_080299600 ENOG411E188 A0A1P8ASU2,A0A1P8ASY5,A0A1P8ASU1,F4I4C1 A0A1P8ASU2_ARATH,A0A1P8ASY5_ARATH,A0A1P8ASU1_ARATH,F4I4C1_ARATH RUN/FYVE domain protein 36784,51391,36837,50132 RUN/FYVE domain protein integral component of membrane [GO:0016021] locus:1009023076; AT1G10417 NA Os10g0411750 protein (Fragment) A0A0P0XUG6 A0A0P0XUG6_ORYSJ Os10g0411750 OSNPB_100411750 ENOG411E6YH Q9LPK8 Q9LPK8_ARATH F24J8.12 protein (TPRXL) 36127 F24J8.12 protein (TPRXL) locus:2026977; AT1G21510 NA NA NA NA NA NA NA NA ENOG411E18D HHO5 F4JRB0,A0A1P8B7F3 HHO5_ARATH,A0A1P8B7F3_ARATH Transcription factor HHO5 (MYB-domain transcription factor HHO5) (Protein HRS1 HOMOLOG 5) (Protein ULT1 INTERACTING FACTOR 1),Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: Increased number of sepals and petals in flowers. Loss of organ boundary and identity, producing fused sepals, petaloid stamens and branching stamens fused along the filament. {ECO:0000269|PubMed:26903506}. FUNCTION: Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions. 41679,32172 Transcription factor HHO5 (MYB-domain transcription factor HHO5) (Protein HRS1 HOMOLOG 5) (Protein ULT1 INTERACTING FACTOR 1),Homeodomain-like superfamily protein cytosol [GO:0005829]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; floral organ formation [GO:0048449]; negative regulation of gene expression [GO:0010629]; regulation of transcription, DNA-templated [GO:0006355]; specification of plant organ identity [GO:0090701]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}. locus:2115070; AT4G37180 MYB family transcription factor Myb-like DNA-binding domain, SHAQKYF class family protein, expressed (Os03g0764600 protein) (Putative Myb-like DNA-binding protein) (cDNA clone:001-200-C11, full insert sequence) Q7Y0B7 Q7Y0B7_ORYSJ OSJNBa0079B15.28 LOC_Os03g55590 Os03g0764600 OSNPB_030764600 ENOG411E18E T10D17_10 Q9C568,Q9LXM6 Q9C568_ARATH,Q9LXM6_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (NDR1/HIN1-like protein),At3g44220 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein T10D17_10) 23736,23254 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (NDR1/HIN1-like protein),At3g44220 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Uncharacterized protein T10D17_10) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952],anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] locus:504956450;,locus:2095685; AT5G22200,AT3G44220 harpin-induced protein 1 domain containing protein expressed NA NA NA NA NA NA NA ENOG411E18C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Leucine Rich Repeat family protein, expressed (Os11g0300600 protein) (Similar to protein kinase homolog T1F15.2-Arabidopsis thaliana) (cDNA clone:001-016-G05, full insert sequence) Q53P27 Q53P27_ORYSJ LOC_Os11g19480 Os11g0300600 OsJ_33708 OSNPB_110300600 ENOG411E18N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0789200 protein (cDNA clone:J023110F08, full insert sequence) Q8S1Q8 Q8S1Q8_ORYSJ Os01g0789200 OsJ_03728 OSNPB_010789200 P0557A01.9 ENOG411E18M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os03g0185200 protein Q0DUH9 Q0DUH9_ORYSJ Os03g0185200 OSNPB_030185200 ENOG411E18J MSF3.24 Q501A1,O64616,Q944G8,A8MQE6 Q501A1_ARATH,O64616_ARATH,Q944G8_ARATH,A8MQE6_ARATH At2g18860 (Syntaxin/t-SNARE family protein) (Uncharacterized protein At2g18860),Syntaxin/t-SNARE family protein (Uncharacterized protein At2g18860),AT4g30240/F9N11_90 (Syntaxin/t-SNARE family protein),Syntaxin/t-SNARE family protein 33775,29915,34417,31619 At2g18860 (Syntaxin/t-SNARE family protein) (Uncharacterized protein At2g18860),Syntaxin/t-SNARE family protein (Uncharacterized protein At2g18860),AT4g30240/F9N11_90 (Syntaxin/t-SNARE family protein),Syntaxin/t-SNARE family protein integral component of membrane [GO:0016021]; nucleus [GO:0005634]; Golgi vesicle transport [GO:0048193],membrane [GO:0016020]; Golgi vesicle transport [GO:0048193],integral component of membrane [GO:0016021]; Golgi vesicle transport [GO:0048193] locus:2044470;,locus:2128966; AT2G18860,AT4G30240 syntaxin 6 N-terminal domain containing protein expressed Clathrin-coat assembly protein-like (Os08g0244100 protein) (cDNA clone:001-124-H06, full insert sequence) (cDNA clone:J033071B08, full insert sequence) Q6Z9Z3 Q6Z9Z3_ORYSJ Os08g0244100 OsJ_26569 OSNPB_080244100 P0437G01.19 ENOG411E18H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os05g0498800 protein (Fragment),Os12g0500800 protein (Fragment),Os11g0427500 protein,Os09g0292300 protein,Os02g0813200 protein,Os06g0595700 protein A0A0P0WP19,A0A0N7KU27,A0A0P0Y1G7,A0A0P0XKN7,A0A0P0VR86,A0A0N7KMC8 A0A0P0WP19_ORYSJ,A0A0N7KU27_ORYSJ,A0A0P0Y1G7_ORYSJ,A0A0P0XKN7_ORYSJ,A0A0P0VR86_ORYSJ,A0A0N7KMC8_ORYSJ Os05g0498800 OSNPB_050498800,Os12g0500800 OSNPB_120500800,Os11g0427500 OSNPB_110427500,Os09g0292300 OSNPB_090292300,Os02g0813200 OSNPB_020813200,Os06g0595700 OSNPB_060595700 ENOG411E18I Q9C7G6 Q9C7G6_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At1g72030) (Uncharacterized protein At1g72030/F28P5_8) (Uncharacterized protein F28P5.8) 28917 Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At1g72030) (Uncharacterized protein At1g72030/F28P5_8) (Uncharacterized protein F28P5.8) cytoplasm [GO:0005737]; N-acetyltransferase activity [GO:0008080] locus:2030306; AT1G72030 Acetyltransferase (GNAT) family Os07g0264800 protein (cDNA clone:J013062A11, full insert sequence) Q0D7C8 Q0D7C8_ORYSJ Os07g0264800 Os07g0264800 OSNPB_070264800 ENOG411E18T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate-induced protein 1 conserved region Os02g0756600 protein (Putative phi-1) (cDNA clone:001-108-F03, full insert sequence) Q6Z677 Q6Z677_ORYSJ Os02g0756600 Os02g0756600 OsJ_08446 OSNPB_020756600 P0471A11.5 P0627E03.41 ENOG411E18U SWEET4,SWEET5,AtVEX1 Q944M5,Q9FM10,A0A1P8BCF4 SWET4_ARATH,SWET5_ARATH,A0A1P8BCF4_ARATH Bidirectional sugar transporter SWEET4 (AtSWEET4) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 4),Bidirectional sugar transporter SWEET5 (AtSWEET5) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 5) (Protein VEGETATIVE CELL EXPRESSED 1) (AtVEX1),Nodulin MtN3 family protein FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane (By similarity). May play roles in nurturing the male gametophyte (PubMed:25988582). {ECO:0000250|UniProtKB:Q8L9J7, ECO:0000303|PubMed:25988582}. R-ATH-189200; 27815,27210,24345 Bidirectional sugar transporter SWEET4 (AtSWEET4) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 4),Bidirectional sugar transporter SWEET5 (AtSWEET5) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 5) (Protein VEGETATIVE CELL EXPRESSED 1) (AtVEX1),Nodulin MtN3 family protein integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; sugar transmembrane transporter activity [GO:0051119]; carbohydrate transport [GO:0008643]; protein homooligomerization [GO:0051260],integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; sugar transmembrane transporter activity [GO:0051119]; carbohydrate transport [GO:0008643]; protein homooligomerization [GO:0051260],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] DEVELOPMENTAL STAGE: Expressed in the vegetative cell during the later stages of pollen development, mostly in tricellular pollen grains, and, to a lower extent, in bicellular pollen grains. {ECO:0000269|PubMed:16055690}. locus:505006381;,locus:2170748; AT3G28007,AT5G62850 bidirectional sugar transporter Bidirectional sugar transporter SWEET6b (OsSWEET6b),Putative bidirectional sugar transporter SWEET7d (OsSWEET7d),Putative bidirectional sugar transporter SWEET7e (OsSWEET7e),Bidirectional sugar transporter SWEET5 (OsSWEET5),Bidirectional sugar transporter SWEET6a (OsSWEET6a),Os09g0258700 protein,Os09g0256650 protein,Os09g0254050 protein (Fragment) Q8W0K2,B9G2E6,A3BWJ9,Q6L568,Q8LR09,A0A0P0XLE9,A0A0P0XJV7,A0A0P0XIZ3 SWT6B_ORYSJ,SWT7D_ORYSJ,SWT7E_ORYSJ,SWET5_ORYSJ,SWT6A_ORYSJ,A0A0P0XLE9_ORYSJ,A0A0P0XJV7_ORYSJ,A0A0P0XIZ3_ORYSJ SWEET6B Os01g0605700 LOC_Os01g42090 OsJ_02536 P0681B11.45 P0704D04.1,SWEET7D Os09g0259200 LOC_Os09g08490 OsJ_28570,SWEET7E Os09g0256600 LOC_Os09g08270 OsJ_28561,SWEET5 Os05g0588500 LOC_Os05g51090 OJ1007_H05.17 OJ1115_D04.3 OsJ_19730,SWEET6A Os01g0606000 LOC_Os01g42110 OsJ_02538 P0704D04.5,Os09g0258700 OSNPB_090258700,Os09g0256650 OSNPB_090256650,Os09g0254050 OSNPB_090254050 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane (By similarity). Can transport galactose. Prevents growth but promotes senescence (PubMed:25988582, PubMed:24709840). Involved in regulating the crosstalk between sugar and auxin. Regulates negatively the auxin signaling pathway and translocation (PubMed:24709840). {ECO:0000250|UniProtKB:Q8L9J7, ECO:0000269|PubMed:24709840, ECO:0000303|PubMed:25988582}. ENOG411E18R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0490500 protein A0A0P0WBX2 A0A0P0WBX2_ORYSJ Os04g0490500 OSNPB_040490500 ENOG411E18S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA NA NA NA NA NA NA NA ENOG411E18P Q5XF57 Y5576_ARATH Probable receptor-like serine/threonine-protein kinase At5g57670 (EC 2.7.11.1) 2.7.11.1 65049 Probable receptor-like serine/threonine-protein kinase At5g57670 (EC 2.7.11.1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2172555; AT5G57670 receptor-like serine threonine-protein kinase Os08g0249100 protein (SERK1 protein-like) (cDNA clone:J023008N13, full insert sequence) Q6YW24 Q6YW24_ORYSJ Os08g0249100 OsJ_26612 OSJNBa0012K14.9 OSJNBb0003H03.31 OSNPB_080249100 ENOG411E18Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os08g0530300 protein (Putative leucine zipper-containing protein) Q6ZI99 Q6ZI99_ORYSJ Os08g0530300 Os08g0530300 OJ1770_H02.33 OJ1789_C07.12 OSNPB_080530300 ENOG411E18Z HHO2,HHO3 Q8VZS3,Q9FPE8,A0A1P8AW12 HHO2_ARATH,HHO3_ARATH,A0A1P8AW12_ARATH Transcription factor HHO2 (MYB-domain transcription factor HHO2) (Protein HRS1 HOMOLOG 2),Transcription factor HHO3 (MYB-domain transcription factor HHO3) (Protein HRS1 HOMOLOG 3),Myb-like transcription factor family protein DISRUPTION PHENOTYPE: Reduced number and length of lateral roots. {ECO:0000269|PubMed:27016098}. FUNCTION: Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.,FUNCTION: Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. 39424,38849,31709 Transcription factor HHO2 (MYB-domain transcription factor HHO2) (Protein HRS1 HOMOLOG 2),Transcription factor HHO3 (MYB-domain transcription factor HHO3) (Protein HRS1 HOMOLOG 3),Myb-like transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; phosphate ion homeostasis [GO:0055062]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2026863;,locus:2031210; AT1G68670,AT1G25550 MYB family transcription factor Transcription factor NIGT1 (MYB-domain transcription factor NIGT1) (Protein NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) Q6Z869 NIGT1_ORYSJ NIGT1 Os02g0325600 LOC_Os02g22020 P0476C12.20 FUNCTION: Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs. ENOG411E18X MOC1,T15B3_50 Q8GWA2,Q9LXW8,F4IVK9 MOC1_ARATH,Q9LXW8_ARATH,F4IVK9_ARATH Holliday junction resolvase MOC1, chloroplastic (EC 3.1.22.4) (Protein MONOKARYOTIC CHLOROPLAST 1) (AtMOC1),MutS2 (Uncharacterized protein T15B3_50),MutS2 DISRUPTION PHENOTYPE: Albino phenotype and decrease in cpDNA copy number. {ECO:0000269|PubMed:28495749}. FUNCTION: A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products. Mediates chloroplast nucleoid segregation during chloroplast division. {ECO:0000269|PubMed:28495749}. MISCELLANEOUS: RNAi mutant displays chloroplasts with no chlorophyll and aberrant nucleoid morphology. {ECO:0000269|PubMed:28495749}. 3.1.22.4 30046,21772,36452 Holliday junction resolvase MOC1, chloroplastic (EC 3.1.22.4) (Protein MONOKARYOTIC CHLOROPLAST 1) (AtMOC1),MutS2 (Uncharacterized protein T15B3_50),MutS2 chloroplast nucleoid [GO:0042644]; crossover junction endodeoxyribonuclease activity [GO:0008821]; four-way junction DNA binding [GO:0000400]; metal ion binding [GO:0046872]; DNA recombination [GO:0006310]; nucleoid organization [GO:0090143],nucleic acid binding [GO:0003676],integral component of membrane [GO:0016021]; nucleic acid binding [GO:0003676] locus:2097129;,locus:2039508; AT2G26840,AT3G43910 NA Os01g0268900 protein Q5NBI9 Q5NBI9_ORYSJ Os01g0268900 OsJ_01234 OSNPB_010268900 P0011D01.32 P0667A10.6 ENOG411E18Y WIP6 Q9FX68 ZWIP6_ARATH Zinc finger protein WIP6 (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 5) (WIP-domain protein 6) (AtWIP6) DISRUPTION PHENOTYPE: Defects in venation pattern in leaves and cotyledons, altered phyllotaxy of vegetative leaves, short roots, delay in leaf initiation and reduced apical dominance. {ECO:0000269|PubMed:18643975}. dot5-1 mutants have a misaligned venation defect in their leaves and cotyledons. Their phenotypes may vary somewhat but dot5-1 mutants often have shorter roots and delayed leaf initiation compared to wild-type seedlings. They also have an abnormal petiole length and phyllotaxy. Apical dominance is reduced in dot5-1 mutants and they appear to be hypersensitive to an application of the polar auxin transport inhibitor NPA.,This mutant is reported to have an embryo lethal phenotype in the homozygous state. Delayed leaf growth; Abnormal divergence angle between cotyledons; Abnormal vein patterning in leaves-T. Nelson-2008 FUNCTION: Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. 34347 Zinc finger protein WIP6 (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 5) (WIP-domain protein 6) (AtWIP6) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon vascular tissue pattern formation [GO:0010588]; leaf vascular tissue pattern formation [GO:0010305]; phloem or xylem histogenesis [GO:0010087]; root development [GO:0048364]; shoot system development [GO:0048367]; transcription, DNA-templated [GO:0006351] locus:2205334; AT1G13290 protein TRANSPARENT TESTA 1-like Os09g0307400 protein A0A0P0XJS2 A0A0P0XJS2_ORYSJ Os09g0307400 OSNPB_090307400 ENOG411ECQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAA transporter family NA NA NA NA NA NA NA ENOG411E6YG Q08AA3,A0A1P8B732 Q08AA3_ARATH,A0A1P8B732_ARATH At4g28690,Uncharacterized protein 49233,46465 At4g28690,Uncharacterized protein locus:2117753; AT4G28690 NA NA NA NA NA NA NA NA ENOG411ECQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RanGTP-binding protein NA NA NA NA NA NA NA ENOG411E6YD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6YE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411ECQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411ECQX NAC096,anac071 Q9LS24,A0A1L7NZ99,A0A1R7T389 NAC96_ARATH,A0A1L7NZ99_ARATH,A0A1R7T389_ARATH NAC domain-containing protein 96 (ANAC096),NAC domain containing protein 71,NAC domain containing protein 96 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings are hyposensitive to growth inhibition mediated by abscisic acid (ABA), and show decreased resistance to dehydration stress. {ECO:0000269|PubMed:24285786}. FUNCTION: Transcriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}. 33580,33631,32404 NAC domain-containing protein 96 (ANAC096),NAC domain containing protein 71,NAC domain containing protein 96 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosettes leaves, cauline leaves and stems. {ECO:0000269|PubMed:24285786}. locus:2142285; AT5G46590 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411E6YX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: SET domain NA NA NA NA NA NA NA ENOG411E6YR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiE/COQ5 methyltransferase family NA NA NA NA NA NA NA ENOG411ECQN LECRK16,LecRK-I.6 Q9M1G3,A0A1I9LTM6 LRK16_ARATH,A0A1I9LTM6_ARATH Probable L-type lectin-domain containing receptor kinase I.6 (LecRK-I.6) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein 2.7.11.1 73499,79618 Probable L-type lectin-domain containing receptor kinase I.6 (LecRK-I.6) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] locus:2085587; AT3G45440 lectin protein kinase family NA NA NA NA NA NA NA ENOG411ECQM Q9SZU4,A0A1P8B3M2,A8MRY2 Q9SZU4_ARATH,A0A1P8B3M2_ARATH,A8MRY2_ARATH Uncharacterized protein AT4g37440 (Uncharacterized protein F6G17.90),Uncharacterized protein 53921,49145,50711 Uncharacterized protein AT4g37440 (Uncharacterized protein F6G17.90),Uncharacterized protein locus:2126407; AT4G37440 NA NA NA NA NA NA NA NA ENOG411E6QG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Domain-Containing protein CHP-rich zinc finger protein-like (Os07g0610200 protein),CHP-rich zinc finger protein-like (Os07g0610100 protein),CHP-rich zinc finger protein-like (Os07g0611500 protein),Os07g0611400 protein,CHP-rich zinc finger protein-like (Os07g0609100 protein),Os07g0610700 protein,Os07g0611200 protein Q6YTW3,Q6YTW4,Q8H5Y4,Q8H5Y7,Q6YTX4,A0A0P0X8U6,A0A0P0X8M3 Q6YTW3_ORYSJ,Q6YTW4_ORYSJ,Q8H5Y4_ORYSJ,Q8H5Y7_ORYSJ,Q6YTX4_ORYSJ,A0A0P0X8U6_ORYSJ,A0A0P0X8M3_ORYSJ Os07g0610200 OsJ_25087 OSJNBb0018L13.33 OSNPB_070610200,OSJNBb0018L13.32 Os07g0610100 OSNPB_070610100,OJ1003_H02.113 Os07g0611500 OsJ_25097 OSNPB_070611500,OJ1003_H02.109 Os07g0611400 OSNPB_070611400,OSJNBb0018L13.13 Os07g0609100 OSNPB_070609100,Os07g0610700 OSNPB_070610700,Os07g0611200 OSNPB_070611200 ENOG411E6QP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA major allergen Pru ar NA NA NA NA NA NA NA ENOG411E9PU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8UT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os11g0227300 protein (Fragment),Os07g0184032 protein,Os12g0255600 protein,Os08g0365050 protein Q0ITQ6,A0A0P0X367,A0A0P0Y8R1,A0A0P0XF53 Q0ITQ6_ORYSJ,A0A0P0X367_ORYSJ,A0A0P0Y8R1_ORYSJ,A0A0P0XF53_ORYSJ Os11g0227300 OSNPB_110227300,Os07g0184032 OSNPB_070184032,Os12g0255600 OSNPB_120255600,Os08g0365050 OSNPB_080365050 ENOG411E8UV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-5 cytosine-specific DNA methylase NA NA NA NA NA NA NA ENOG411E8UW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0239200 protein Q67VB0 Q67VB0_ORYSJ Os06g0239200 OsJ_20759 OsJ_20760 OSJNBa0052G07.19 OSJNBa0068B06.28 OSNPB_060239200 ENOG411E8UP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Os02g0110100 protein A0A0P0VDS9 A0A0P0VDS9_ORYSJ Os02g0110100 OSNPB_020110100 ENOG411E8UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411E8UR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0359050 protein A0A0P0XEZ9 A0A0P0XEZ9_ORYSJ Os08g0359050 OSNPB_080359050 ENOG411E8US EPFL8 Q1G3V9 EPFL8_ARATH EPIDERMAL PATTERNING FACTOR-like protein 8 (EPF-like protein 8) [Cleaved into: MEPFL8] FUNCTION: Controls stomatal patterning. {ECO:0000250}. 11321 EPIDERMAL PATTERNING FACTOR-like protein 8 (EPF-like protein 8) [Cleaved into: MEPFL8] extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; stomatal complex development [GO:0010374] locus:4010713606; AT1G80133 NA NA NA NA NA NA NA NA ENOG411E8UX Q9LP68,F4HYH8 Q9LP68_ARATH,F4HYH8_ARATH At1g48560 (T1N15.18),Uncharacterized protein 72387,74705 At1g48560 (T1N15.18),Uncharacterized protein locus:2198085; AT1G48560 NA NA NA NA NA NA NA NA ENOG411E8UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytosulfokine precursor protein (PSK) Os11g0557000 protein (Phytosulfokine protein containing protein) (cDNA clone:001-101-C04, full insert sequence) Q2R2M5 Q2R2M5_ORYSJ LOC_Os11g35310 Os11g0557000 OSNPB_110557000 ENOG411E8UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E8UD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein ycf70 (ORF89) Q32759 YCF70_ORYSJ ycf70 LOC_Osp1g00200 ENOG411E8UE Q8LCJ2 Q8LCJ2_ARATH At5g10745 (Transmembrane protein) 5928 At5g10745 (Transmembrane protein) integral component of membrane [GO:0016021] locus:1006230554; AT5G10745 NA Os10g0478900 protein Q0IWY6 Q0IWY6_ORYSJ Os10g0478900 Os10g0478900 OsJ_31905 OSJNBa0055P24.8 OSNPB_100478900 ENOG411E8UF Q9FJV9 Q9FJV9_ARATH Uncharacterized protein 22598 Uncharacterized protein locus:2158661; AT5G67640 NA NA NA NA NA NA NA NA ENOG411E8UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E8UA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8UB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8UC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8UM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8UN MNJ8.7 Q9FHT7 Q9FHT7_ARATH Gb|AAD18119.1 (RING/U-box superfamily protein) 24710 Gb|AAD18119.1 (RING/U-box superfamily protein) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2169155; AT5G37280 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E8UH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8UI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8UJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF393 NA NA NA NA NA NA NA ENOG411E8UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0549900 protein A0A0N7KQ93 A0A0N7KQ93_ORYSJ Os08g0549900 OSNPB_080549900 ENOG411E8U4 Q1G3S1,Q8GWM8,B3H4T0,B3H642 Q1G3S1_ARATH,Q8GWM8_ARATH,B3H4T0_ARATH,B3H642_ARATH Transmembrane protein,Transmembrane protein (Uncharacterized protein At4g16840) 10009,9813,9909,11437 Transmembrane protein,Transmembrane protein (Uncharacterized protein At4g16840) integral component of membrane [GO:0016021] locus:2129201;,locus:4515102950; AT2G35658,AT4G16840 NA Os06g0600800 protein (Fragment) A0A0P0WYU9 A0A0P0WYU9_ORYSJ Os06g0600800 OSNPB_060600800 ENOG411E8U5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8U6 B1WCA4,Q8S8L6 B1WCA4_ARATH,Q8S8L6_ARATH At2g27775 (PPR containing protein),At2g27775 (Expressed protein) (PPR containing protein) (Uncharacterized protein At2g27775/F15K20.2) 12158,10875 At2g27775 (PPR containing protein),At2g27775 (Expressed protein) (PPR containing protein) (Uncharacterized protein At2g27775/F15K20.2) locus:505006275; AT2G27775 NA NA NA NA NA NA NA NA ENOG411E8U7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRR1 NA NA NA NA NA NA NA ENOG411E8U0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat Shock Protein NA NA NA NA NA NA NA ENOG411E8U1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May help in the organization of the PsaE and PsaF subunits (By similarity) NA NA NA NA NA NA NA ENOG411E8U2 Q9LNX0,Q9LNW8 Q9LNX0_ARATH,Q9LNW8_ARATH At1g07476 (F22G5.15) (Transmembrane protein),F22G5.17 20114,13567 At1g07476 (F22G5.15) (Transmembrane protein),F22G5.17 integral component of membrane [GO:0016021] locus:504956272;,locus:504956271; AT1G07476,AT1G07473 NA NA NA NA NA NA NA NA ENOG411E8U8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBM_2 NA NA NA NA NA NA NA ENOG411E8U9 Q8L7R6,A0A1I9LRS2 Q8L7R6_ARATH,A0A1I9LRS2_ARATH DIS3-exonuclease-like protein (Uncharacterized protein At3g52110),DIS3-exonuclease-like protein 8156,13700 DIS3-exonuclease-like protein (Uncharacterized protein At3g52110),DIS3-exonuclease-like protein exonuclease activity [GO:0004527],integral component of membrane [GO:0016021]; exonuclease activity [GO:0004527] locus:1006230209; AT3G52105 Inherit from KOG: Myeloid lymphoid or mixed-lineage leukemia NA NA NA NA NA NA NA ENOG411E9P1 2A6 Q9M2C4,Q84MB3,Q94A78,Q43383,A0A1I9LLX6,A0A1P8AQW5,A0A1P8AM08,A0A1P8AWC4 ACCH8_ARATH,ACCH1_ARATH,ACCH4_ARATH,ACCH5_ARATH,A0A1I9LLX6_ARATH,A0A1P8AQW5_ARATH,A0A1P8AM08_ARATH,A0A1P8AWC4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 1,1-aminocyclopropane-1-carboxylate oxidase homolog 4 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 5 (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT3G61400-MONOMER;,ARA:AT1G06620-MONOMER;,ARA:AT1G03400-MONOMER; 1.14.-.- 41602,40351,39131,44846,32868,42448,31146,40595 1-aminocyclopropane-1-carboxylate oxidase homolog 8 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 1,1-aminocyclopropane-1-carboxylate oxidase homolog 4 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 5 (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in etiolated seedlings, leaves, stems and flowers. {ECO:0000269|PubMed:7579161}. locus:2098876;,locus:2009130;,locus:2020818;,locus:2020798; AT3G61400,AT1G06620,AT1G03400,AT1G03410 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EI5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase NA NA NA NA NA NA NA ENOG411E6BK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) Os11g0456000 protein (Rapid ALkalinization Factor family protein, expressed) (Rapid alkalinizatoin factor) (cDNA clone:J023081K07, full insert sequence) Q2R4Y5 Q2R4Y5_ORYSJ Os11g0456000 RALF LOC_Os11g26880 Os11g0456000 OsJ_33806 OSNPB_110456000 ENOG411E6BH RALF23,RALFL33 Q9LUS7,Q8L9P8 RLF23_ARATH,RLF33_ARATH Rapid alkalinization factor 23 (AtRALF23) (Protein RALF-like 23),Protein RALF-like 33 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation) (PubMed:19473327). {ECO:0000250, ECO:0000269|PubMed:19473327}.,FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 15049,12806 Rapid alkalinization factor 23 (AtRALF23) (Protein RALF-like 23),Protein RALF-like 33 apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; brassinosteroid mediated signaling pathway [GO:0009742]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267]; negative regulation of growth [GO:0045926]; response to brassinosteroid [GO:0009741],apoplast [GO:0048046]; intracellular [GO:0005622]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] DEVELOPMENTAL STAGE: In very young seedlings, confined to the tips of the cotyledons. Later expressed in the cotyledon vasculature and petiole. Present in the tip of emerging leaves. In mature leaves, observed in the vasculature. {ECO:0000269|PubMed:19473327}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves and plants. {ECO:0000269|PubMed:12611624}. locus:2089323;,locus:2130724; AT3G16570,AT4G15800 Whole genome shotgun sequence of line PN40024 scaffold_20.assembly12x (Fragment) Os12g0541700 protein (Rapid ALkalinization Factor family protein, expressed) (cDNA clone:J033128J23, full insert sequence),Os12g0541900 protein (Os12g0542000 protein) (Rapid ALkalinization Factor family protein, expressed),Os01g0932950 protein Q2QP50,Q2QP48,Q942U5 Q2QP50_ORYSJ,Q2QP48_ORYSJ,Q942U5_ORYSJ LOC_Os12g35670 Os12g0541700 OsJ_36394 OSNPB_120541700,Os12g0542000 LOC_Os12g35690 Os12g0541900 OSNPB_120542000,Os01g0932950 OSNPB_010932950 P0423A12.16 P0506E04.37 ENOG411E7Q3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E7KV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2Fe-2S iron-sulfur cluster binding domain NA NA NA NA NA NA NA ENOG411EJXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N-terminal domain of CBF1 interacting co-repressor CIR NA NA NA NA NA NA NA ENOG411EJXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH-plastoquinone oxidoreductase chain 4 NA NA NA NA NA NA NA ENOG411E9KB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA dependent RNA polymerase NA NA NA NA NA NA NA ENOG411EJXZ WEL1 Q9SZB6 WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 (Protein WEL1) 87109 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 (Protein WEL1) cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2119206; AT4G33390 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411DQVW SULTR3;5 Q94LW6 SUT35_ARATH Probable sulfate transporter 3.5 Small rosette leaves; Early flowering; Slightly elevated sulfate levels in seeds-K. Gallardo-2010 FUNCTION: H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation. {ECO:0000250}. R-ATH-174362;R-ATH-427601; 70360 Probable sulfate transporter 3.5 integral component of plasma membrane [GO:0005887]; secondary active sulfate transmembrane transporter activity [GO:0008271]; sulfate transmembrane transporter activity [GO:0015116]; symporter activity [GO:0015293] locus:2183139; AT5G19600 sulfate transporter Os01g0593700 protein (Sulfate transporter 2-like),Os01g0719300 protein (Putative plasma membrane sulphate transporter),Os07g0286950 protein Q8LR58,Q942E2,A0A0P0X547 Q8LR58_ORYSJ,Q942E2_ORYSJ,A0A0P0X547_ORYSJ Os01g0593700 OSNPB_010593700 P0451D05.6,Os01g0719300 OSNPB_010719300 P0480C01.33,Os07g0286950 OSNPB_070286950 ENOG411DSX1 MJC20.10 Q9C5I0,Q9FHY3,F4K005 Q9C5I0_ARATH,Q9FHY3_ARATH,F4K005_ARATH ORMDL family protein (Uncharacterized protein At1g01230),At5g42000 (ORMDL family protein) (Uncharacterized protein At5g42000),ORMDL family protein R-ATH-6798695; 18203,18090,12906 ORMDL family protein (Uncharacterized protein At1g01230),At5g42000 (ORMDL family protein) (Uncharacterized protein At5g42000),ORMDL family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; SPOTS complex [GO:0035339]; cellular sphingolipid homeostasis [GO:0090156]; defense response to bacterium [GO:0042742]; leaf senescence [GO:0010150]; negative regulation of ceramide biosynthetic process [GO:1900060]; response to endoplasmic reticulum stress [GO:0034976]; response to oxidative stress [GO:0006979]; sphingolipid biosynthetic process [GO:0030148],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2035352;,locus:2165690; AT1G01230,AT5G42000 ORM1-like protein ORMDL family protein-like (Os02g0673600 protein),OSJNBa0005N02.9 protein (Os04g0567700 protein) (cDNA clone:J013001D24, full insert sequence) Q6EPG3,Q7XUI3 Q6EPG3_ORYSJ,Q7XUI3_ORYSJ Os02g0673600 Os02g0673600 OsJ_07903 OSNPB_020673600 P0657H12.7,Os04g0567700 Os04g0567700 OsJ_15817 OSJNBa0005N02.9 OSNPB_040567700 ENOG411EJX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411E3I9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60S ribosomal protein Os02g0821200 protein (Fragment),Os01g0706500 protein,Os05g0541900 protein (Putative 60S ribosomal L28 protein) (cDNA clone:J013069H24, full insert sequence) Q0DWC5,Q0JJZ7,Q5TKP2 Q0DWC5_ORYSJ,Q0JJZ7_ORYSJ,Q5TKP2_ORYSJ Os02g0821200 Os02g0821200 OSNPB_020821200,Os01g0706500 Os01g0706500 OsJ_03190 OSNPB_010706500,Os05g0541900 OJ1362_G11.15 OSNPB_050541900 ENOG411E3I8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0150000 protein (Putative pollen-specific protein) Q5VND1 Q5VND1_ORYSJ Os06g0150000 OsJ_20139 OSNPB_060150000 P0710H01.10 ENOG411E3I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Os01g0931800 protein,Os01g0931700 protein Q5JMI1,A0A0P0VCE9 Q5JMI1_ORYSJ,A0A0P0VCE9_ORYSJ Os01g0931800 OsJ_04653 OSNPB_010931800 P0423A12.2 P0506E04.23,Os01g0931700 OSNPB_010931700 ENOG411E3I2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI Os12g0561500 protein (Pectinesterase inhibitor domain containing protein, expressed) Q2QNL2 Q2QNL2_ORYSJ Os12g0561500 LOC_Os12g37480 OSNPB_120561500 ENOG411E3I0 Q9LPM3 Q9LPM3_ARATH F2J10.10 protein (Putative tubulin alpha-6 chain) (Tubulin alpha-6 chain) 23274 F2J10.10 protein (Putative tubulin alpha-6 chain) (Tubulin alpha-6 chain) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2031010; AT1G50020 NA Os11g0549900 protein (cDNA, clone: J080303C17, full insert sequence) B7F9J4 B7F9J4_ORYSJ Os11g0549900 OSNPB_110549900 ENOG411E3I4 SEP2 Q9SJ02 STEP2_ARATH Stress enhanced protein 2, chloroplastic FUNCTION: May be involved in non-photochemical quenching, a process that maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage (By similarity). May play a photoprotective role in the thylakoid membrane in response to light stress (Probable). {ECO:0000250|UniProtKB:Q9XF91, ECO:0000305}. 21989 Stress enhanced protein 2, chloroplastic chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; chlorophyll binding [GO:0016168]; cellular response to high light intensity [GO:0071486]; cellular response to UV-A [GO:0071492]; photosynthesis, light harvesting [GO:0009765]; response to wounding [GO:0009611] locus:2052489; AT2G21970 Stress enhanced protein 2 OSJNBb0003B01.8 protein (Os04g0639200 protein) Q7XPH5 Q7XPH5_ORYSJ Os04g0639200 OSJNBb0003B01.8 OSNPB_040639200 ENOG411E3IK ERF087 Q9FZ90 ERF87_ARATH Ethylene-responsive transcription factor ERF087 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 27703 Ethylene-responsive transcription factor ERF087 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2010529; AT1G28160 AP2 Branched silkless 1-like (Os02g0520000 protein) Q6H4L1 Q6H4L1_ORYSJ P0461D06.33 Os02g0520000 OSNPB_020520000 ENOG411E3IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0157600 protein (Fragment) A0A0P0UYA2 A0A0P0UYA2_ORYSJ Os01g0157600 OSNPB_010157600 ENOG411E3IH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP Os04g0289500 protein Q0JED8 Q0JED8_ORYSJ Os04g0289500 Os04g0289500 OsJ_14156 OSNPB_040289500 ENOG411E3IN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Calmodulin-like protein 5 (Calmodulin-2) (OsCAM-2) Q948R0 CML5_ORYSJ CML5 Os12g0603800 LOC_Os12g41110 OsJ_035343 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E3IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411E3IA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy metal-associated domain containing protein Heavy metal-associated domain containing protein, expressed (Os10g0209700 protein) (Putative ATFP3) Q7XG81 Q7XG81_ORYSJ Os10g0209700 LOC_Os10g14870 Os10g0209700 OsJ_15324 OSJNBa0082N11.9 OSNPB_100209700 ENOG411E3IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN NA NA NA NA NA NA NA ENOG411E3ID MRO11.1 Q5PNU6,Q9FF85 Q5PNU6_ARATH,Q9FF85_ARATH At5g23950 (Calcium-dependent lipid-binding (CaLB domain) family protein),Calcium-dependent lipid-binding (CaLB domain) family protein (Emb|CAB80929.1) 23355,25289 At5g23950 (Calcium-dependent lipid-binding (CaLB domain) family protein),Calcium-dependent lipid-binding (CaLB domain) family protein (Emb|CAB80929.1) locus:2172828; AT5G23950 C2 Os09g0571200 protein (cDNA clone:001-105-A01, full insert sequence),Os08g0562600 protein (Putative C2 domain-containing protein) (cDNA clone:006-301-D11, full insert sequence) (cDNA clone:J013115M05, full insert sequence) Q651B1,Q6ZBX9 Q651B1_ORYSJ,Q6ZBX9_ORYSJ Os09g0571200 B1331F11.7 OsJ_30427 OSNPB_090571200,Os08g0562600 Os08g0562600 OsJ_28298 OSNPB_080562600 P0543D10.14 ENOG411E3IY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0568400 protein A0A0P0WXV9 A0A0P0WXV9_ORYSJ Os06g0568400 OSNPB_060568400 ENOG411E3IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os03g0615300 protein),Os03g0597400 protein (Fragment) Q6AU15,Q0DQG8 Q6AU15_ORYSJ,Q0DQG8_ORYSJ LOC_Os03g41920 Os03g0615300 OSJNBb0096H12.24 OSNPB_030615300,Os03g0597400 OSNPB_030597400 ENOG411E3IR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E3IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: RING Os03g0107500 protein A0A0P0VS01 A0A0P0VS01_ORYSJ Os03g0107500 OSNPB_030107500 ENOG411E3IP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os01g0558100 protein (Putative tau class GST protein 4) Q8S9U5 Q8S9U5_ORYSJ Os01g0558100 B1064G04.4 B1144D11.26 OsJ_02217 OSNPB_010558100 ENOG411E3IW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0550432 protein A0A0N7KNM6 A0A0N7KNM6_ORYSJ Os07g0550432 OSNPB_070550432 ENOG411EI5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0135833 protein,Os07g0554150 protein (Fragment),Os11g0119422 protein,Os10g0135250 protein A0A0P0XRU6,A0A0P0X7C8,A0A0P0XYR0,A0A0P0XRB1 A0A0P0XRU6_ORYSJ,A0A0P0X7C8_ORYSJ,A0A0P0XYR0_ORYSJ,A0A0P0XRB1_ORYSJ Os10g0135833 OSNPB_100135833,Os07g0554150 OSNPB_070554150,Os11g0119422 OSNPB_110119422,Os10g0135250 OSNPB_100135250 ENOG411EAV8 XI-G,XIG F4IUG9,A0A1P8B2Y8,A0A1P8B304,A0A1P8B303 MYO13_ARATH,A0A1P8B2Y8_ARATH,A0A1P8B304_ARATH,A0A1P8B303_ARATH Myosin-13 (Myosin XI G) (AtXIG),Myosin-like protein XIG FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250}. 169073,167193,167769,166121 Myosin-13 (Myosin XI G) (AtXIG),Myosin-like protein XIG myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774] locus:2039007; AT2G20290 at2g20290 (e 0.0) xig atxig xig NA NA NA NA NA NA NA ENOG411EAV9 MJB20.16,MCM23.3,F17J16_170,MJB20.15,F24K9.3 Q9SHK9,Q9FJG5,Q9LYS4,Q9LIC4,Q84X54,Q9CAY7,A0A1I9LSZ4,F4J868,F4HZZ0 Q9SHK9_ARATH,Q9FJG5_ARATH,Q9LYS4_ARATH,Q9LIC4_ARATH,Q84X54_ARATH,Q9CAY7_ARATH,A0A1I9LSZ4_ARATH,F4J868_ARATH,F4HZZ0_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g17600),CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F17J16_170),Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (DC1 domain-containing protein) (Uncharacterized protein At2g17590/MJB20.15),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F24K9.3) 67316,68942,69857,75489,73472,68171,53081,51395,71042 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g17600),CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F17J16_170),Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (DC1 domain-containing protein) (Uncharacterized protein At2g17590/MJB20.15),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F24K9.3) response to chitin [GO:0010200]; response to gibberellin [GO:0009739]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to UV [GO:0009411]; response to water deprivation [GO:0009414],membrane [GO:0016020]; metal ion binding [GO:0046872],plasmodesma [GO:0009506]; metal ion binding [GO:0046872] locus:2053933;,locus:2161563;,locus:2077740;,locus:2091531;,locus:2053923;,locus:2074698;,locus:2077745;,locus:2014721; AT2G17600,AT5G17960,AT3G59120,AT3G13760,AT2G17590,AT3G11370,AT3G59130,AT1G35610 domain-containing protein NA NA NA NA NA NA NA ENOG411EAV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0237900 protein) Q2QV98 Q2QV98_ORYSJ Os12g0237900 LOC_Os12g13550 Os12g0237900 OSNPB_120237900 ENOG411EAV2 FIS1B Q94CK3 FIS1B_ARATH Mitochondrial fission 1 protein B (FIS1 homolog B) (AtFIS1b) Semi-dwarf; Abnormal mitochondria and peroxisome morphology-J. Hu-2008 FUNCTION: Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes. In association with PEX11C, PEX11D, PEX11E and DRP3A, is involved in cell cycle-associated constitutive self-replication of preexisting peroxisomes. {ECO:0000269|PubMed:18539750, ECO:0000269|PubMed:18785999, ECO:0000269|PubMed:19825601}. MISCELLANEOUS: Plants silencing FIS1B show reduced growth, increase in the size of mitochondria and decrease in the number of mitochondria per cell (PubMed:18785999). Overexpression of FIS1B increases the fission of peroxisomes and mitochondria (PubMed:19825601). {ECO:0000305|PubMed:18785999, ECO:0000305|PubMed:19825601}. 17920 Mitochondrial fission 1 protein B (FIS1 homolog B) (AtFIS1b) integral component of membrane [GO:0016021]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; mitochondrial fission [GO:0000266]; peroxisome fission [GO:0016559] locus:505006607; AT5G12390 fission 1b NA NA NA NA NA NA NA ENOG411EAV4 Q9FHH1 Y5772_ARATH B3 domain-containing protein At5g57720 34399 B3 domain-containing protein At5g57720 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2172590; AT5G57720 B3 NA NA NA NA NA NA NA ENOG411EAV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Carboxypeptidase (EC 3.4.16.-) Q5ZCC2 Q5ZCC2_ORYSJ Os01g0158200 Os01g0158200 OsJ_00453 OSNPB_010158200 P0011G08.46 ENOG411EAVX Q8GWT7 LEA47_ARATH Late embryogenesis abundant protein 47 (LEA 47) FUNCTION: LEA proteins are late embryonic proteins abundant in higher plant seed embryos. The function of those proteins is not known. {ECO:0000305}. 19516 Late embryogenesis abundant protein 47 (LEA 47) cytosol [GO:0005829]; nucleus [GO:0005634] locus:2143789; AT5G27980 Seed maturation family protein NA NA NA NA NA NA NA ENOG411EAVY GCS1,GCS2 F4HTM3,Q84M89,A0A1P8ARK2 GCS1_ARATH,GCS2_ARATH,A0A1P8ARK2_ARATH Mannosyl-oligosaccharide glucosidase GCS1 (EC 3.2.1.106) (Alpha-glucosidase 1) (Glucosidase 1) (Protein KNOPF) (Protein MUNCHKIN),Alpha-glucosidase 2 (Glucosidase 2) (EC 3.2.1.-),Six-hairpin glycosidases superfamily protein DISRUPTION PHENOTYPE: Embryonic lethal. Impaired glucosidase activity leading to a strongly reduced cellulose content. Abnormal shrunken seeds with embryos arrested at the heart stage. Low levels of storage proteins in seeds accompanied by a loss of protein bodies, abnormal cell enlargement and occasional cell wall disruptions. {ECO:0000269|PubMed:11230125, ECO:0000269|PubMed:11901167}. Increased number of root hairs and increased stomatal density in siliques. Embryo defective; Male gametophyte defective-C. Somerville; L. Lepiniec-2001 FUNCTION: Cleaves the distal alpha 1,2-linked glucose residue from the Glc(3)Man(9)GlcNAc(2) oligosaccharide precursor. Required for the accumulation of seed storage proteins, the formation of protein bodies, cell differentiation, cellulose biosynthesis and organization (in cell walls), cell shape determination and organization (e.g. epidermal cells), and embryo development. Involved in root development. {ECO:0000269|PubMed:11230125, ECO:0000269|PubMed:11901167, ECO:0000269|PubMed:18503769}. PATHWAY: Glycan metabolism; N-glycan degradation. ARA:AT1G24320-MONOMER; R-ATH-532668; 3.2.1.106; 3.2.1.106,3.2.1.- 97634,90609,87231 Mannosyl-oligosaccharide glucosidase GCS1 (EC 3.2.1.106) (Alpha-glucosidase 1) (Glucosidase 1) (Protein KNOPF) (Protein MUNCHKIN),Alpha-glucosidase 2 (Glucosidase 2) (EC 3.2.1.-),Six-hairpin glycosidases superfamily protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; alpha-1,4-glucosidase activity [GO:0004558]; mannosyl-oligosaccharide glucosidase activity [GO:0004573]; epidermal cell differentiation [GO:0009913]; oligosaccharide metabolic process [GO:0009311]; root epidermal cell differentiation [GO:0010053],mannosyl-oligosaccharide glucosidase activity [GO:0004573]; oligosaccharide metabolic process [GO:0009311] TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:11230125, ECO:0000269|PubMed:11901167}. locus:2008778;,locus:2032462; AT1G67490,AT1G24320 Mannosyl oligosaccharide glucosidase NA NA NA NA NA NA NA ENOG411EAVZ MIK19.28 Q9FJT2,A0A1P8BH62 FDL40_ARATH,A0A1P8BH62_ARATH Putative F-box/FBD/LRR-repeat protein At5g56810,F-box/RNI-like/FBD-like domains-containing protein 49153,34903 Putative F-box/FBD/LRR-repeat protein At5g56810,F-box/RNI-like/FBD-like domains-containing protein locus:2165071; AT5G56810 f-box family NA NA NA NA NA NA NA ENOG411EAVP BHLH67 Q700E4,A0A1I9LM14,A0A1I9LM13,A0A1I9LM11 BH067_ARATH,A0A1I9LM14_ARATH,A0A1I9LM13_ARATH,A0A1I9LM11_ARATH Transcription factor bHLH67 (Basic helix-loop-helix protein 67) (AtbHLH67) (bHLH 67) (Transcription factor EN 11) (bHLH transcription factor bHLH067),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 41030,25396,34009,39998 Transcription factor bHLH67 (Basic helix-loop-helix protein 67) (AtbHLH67) (bHLH 67) (Transcription factor EN 11) (bHLH transcription factor bHLH067),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2079512; AT3G61950 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EAVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EAVR GRF6 Q9ZQ12,A0A1P8B259,A0A1P8B269 GRF6_ARATH,A0A1P8B259_ARATH,A0A1P8B269_ARATH Growth-regulating factor 6 (AtGRF6) (Transcription activator GRF6),Growth-regulating factor 6 FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}. 28211,32789,20012 Growth-regulating factor 6 (AtGRF6) (Transcription activator GRF6),Growth-regulating factor 6 nucleus [GO:0005634]; ATP binding [GO:0005524]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; ATP binding [GO:0005524]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; developmental process [GO:0032502]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. locus:2051597; AT2G06200 QLQ NA NA NA NA NA NA NA ENOG411EAVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SH3 domain-binding protein 5 (SH3BP5) NA NA NA NA NA NA NA ENOG411EAVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0177000 protein (Fragment) A0A0P0W772 A0A0P0W772_ORYSJ Os04g0177000 OSNPB_040177000 ENOG411EAVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EAVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC HAT family dimerisation domain containing protein, expressed (Os12g0262000 protein) (Os12g0262100 protein),Os12g0265300 protein,Os02g0497000 protein,Os10g0378900 protein,Os10g0426100 protein,Os06g0592951 protein,Os03g0311250 protein,Os03g0311200 protein,Os05g0350150 protein (Fragment),Os10g0335100 protein Q2QUI7,Q2QUF0,A0A0P0VJA6,A0A0P0XUA5,A0A0P0XUB7,A0A0P0WYK4,A0A0P0VXH2,A0A0P0VWM2,A0A0P0WL59,A0A0P0XSW0 Q2QUI7_ORYSJ,Q2QUF0_ORYSJ,A0A0P0VJA6_ORYSJ,A0A0P0XUA5_ORYSJ,A0A0P0XUB7_ORYSJ,A0A0P0WYK4_ORYSJ,A0A0P0VXH2_ORYSJ,A0A0P0VWM2_ORYSJ,A0A0P0WL59_ORYSJ,A0A0P0XSW0_ORYSJ Os12g0262100 LOC_Os12g16130 Os12g0262000 OSNPB_120262100,Os12g0265300 LOC_Os12g16470 OsJ_17647 OSNPB_120265300,Os02g0497000 OSNPB_020497000,Os10g0378900 OSNPB_100378900,Os10g0426100 OSNPB_100426100,Os06g0592951 OSNPB_060592951,Os03g0311250 OSNPB_030311250,Os03g0311200 OSNPB_030311200,Os05g0350150 OSNPB_050350150,Os10g0335100 OSNPB_100335100 ENOG411EAVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EAVJ EML2 Q9FG29 EML2_ARATH Protein EMSY-LIKE 2 (AtEML2) DISRUPTION PHENOTYPE: Reduced resistance to Hyaloperonospora arabidopsidis isolate Hiks1. Slight early flowering phenotype. {ECO:0000269|PubMed:21830950}. FUNCTION: Probably involved in the regulation of chromatin states (Probable). Contributes to RPP7-mediated and basal immunity, especially against Hyaloperonospora arabidopsidis isolate Hiks1. Regulates negatively EDM2-dependent floral transition (PubMed:21830950). {ECO:0000269|PubMed:21830950, ECO:0000305|PubMed:21830950}. 35586 Protein EMSY-LIKE 2 (AtEML2) nucleus [GO:0005634]; defense response to fungus [GO:0050832]; response to heat [GO:0009408]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2170179; AT5G06780 ENT domain NA NA NA NA NA NA NA ENOG411EAVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0629600 protein (Fragment) A0A0N7KT88,A0A0P0Y4N4 A0A0N7KT88_ORYSJ,A0A0P0Y4N4_ORYSJ Os11g0629600 OSNPB_110629600 ENOG411EAVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAVN GLYI7,GLYI4 Q8LD97,Q9XI31,Q9SSC3,A8MS67 Q8LD97_ARATH,Q9XI31_ARATH,Q9SSC3_ARATH,A8MS67_ARATH AT1G80160 protein (At1g80160) (Lactoylglutathione lyase / glyoxalase I family protein),AT1G15380 protein (F9L1.33 protein) (Lactoylglutathione lyase / glyoxalase I family protein) (Uncharacterized protein At1g15380),F18B13.24 protein (Lactoylglutathione lyase / glyoxalase I family protein),Lactoylglutathione lyase / glyoxalase I family protein 19029,19594,23948,16393 AT1G80160 protein (At1g80160) (Lactoylglutathione lyase / glyoxalase I family protein),AT1G15380 protein (F9L1.33 protein) (Lactoylglutathione lyase / glyoxalase I family protein) (Uncharacterized protein At1g15380),F18B13.24 protein (Lactoylglutathione lyase / glyoxalase I family protein),Lactoylglutathione lyase / glyoxalase I family protein lyase activity [GO:0016829] locus:2016254;,locus:2037728; AT1G80160,AT1G15380 Lactoylglutathione lyase family protein NA NA NA NA NA NA NA ENOG411EAVA CYP71B6 O65787 C71B6_ARATH Cytochrome P450 71B6 (EC 1.14.-.-) ARA:AT2G24180-MONOMER; 1.14.-.- 57009 Cytochrome P450 71B6 (EC 1.14.-.-) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; indole-containing compound metabolic process [GO:0042430]; secondary metabolite biosynthetic process [GO:0044550] locus:2047570; AT2G24180 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EAVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA germin-like protein Germin-like protein 8-11,Putative germin-like protein 8-1,Germin-like protein 8-2 (Germin-like protein 16) (Germin-like protein 3) (OsGER3),Germin-like protein 8-6,Germin-like protein 8-8,Germin-like protein 8-10 (Germin-like protein 2),Germin-like protein 8-5,Germin-like protein 8-7 (Germin-like protein 6) (OsGER6),Germin-like protein 8-9 Q6YZY5,Q6YZB2,Q6YZA9,Q6YZA4,Q6YZA1,Q6YZ97,Q6YZA6,Q6YZZ2,Q6YZ99 GL811_ORYSJ,GL81_ORYSJ,GL82_ORYSJ,GL86_ORYSJ,GL88_ORYSJ,GL810_ORYSJ,GL85_ORYSJ,GL87_ORYSJ,GL89_ORYSJ Os08g0190100 LOC_Os08g09080 B1099H05.40 OsJ_025238 P0610E02.16,Os08g0188900 LOC_Os08g08920 B1099H05.17 OsJ_025234 P0020B10.41,GER3 GLP16 Os08g0189100 LOC_Os08g08960 B1099H05.23 OsJ_025236,Os08g0189500 LOC_Os08g09000 B1099H05.31 OsJ_025245 P0610E02.7,Os08g0189700 LOC_Os08g09020 B1099H05.34 OsJ_025247 P0610E02.10,GLP2 Os08g0189900 LOC_Os08g09060 B1099H05.39 P0610E02.15,Os08g0189400 LOC_Os08g08990 B1099H05.29 OsJ_025244 P0610E02.5,GER6 Os08g0189600 LOC_Os08g09010 B1099H05.32 OsJ_025246 P0610E02.8,Os08g0189850 LOC_Os08g09040 B1099H05.37 OsJ_025249 P0610E02.13 FUNCTION: Plays role in broad-spectrum disease resistance. Probably has no oxalate oxidase activity even if the active site is conserved. {ECO:0000269|PubMed:19011003}. MISCELLANEOUS: Member of the 12 germin-like protein gene cluster located on chromosome 8 in the major-effect quantitative trait loci (QTL) for fungal blast resistance. Partial suppression of the 12 germin-like protein genes increases susceptibility to the fungal pathogens causing rice blast and sheath blight diseases. ENOG411EAVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain Os01g0753300 protein (Putative O-methyltransferase) Q8RV92 Q8RV92_ORYSJ Os01g0753300 OSNPB_010753300 P0435B05.34 P0503C12.6 ENOG411EAVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: TOPRIM domain-containing protein NA NA NA NA NA NA NA ENOG411EG26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EG25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclic nucleotide-binding domain NA NA NA NA NA NA NA ENOG411EG29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EG2R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: 5-azacytidine induced 1 NA NA NA NA NA NA NA ENOG411EG2P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EG2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc NA NA NA NA NA NA NA ENOG411EG2V Q8LCF5 Q8LCF5_ARATH At4g37295 9414 At4g37295 locus:505006566; AT4G37295 NA NA NA NA NA NA NA NA ENOG411EG2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0565150 protein A0A0P0XXW5 A0A0P0XXW5_ORYSJ Os10g0565150 OSNPB_100565150 ENOG411EG2T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region NA NA NA NA NA NA NA ENOG411EG2U IDL3 Q6DUW7 IDL3_ARATH Protein IDA-LIKE 3 FUNCTION: May be involved in floral abscission. {ECO:0000269|PubMed:18660431}. MISCELLANEOUS: IDL3 is only partially redundant with IDA. 11047 Protein IDA-LIKE 3 apoplast [GO:0048046]; extracellular space [GO:0005615]; floral organ abscission [GO:0010227] TISSUE SPECIFICITY: Expressed in flowers and seedlings. Detected at the base of pedicel, in the floral abscission zone and in vascular tissues. {ECO:0000269|PubMed:12972671, ECO:0000269|PubMed:18660431}. locus:4010713951; AT5G09805 inflorescence deficient in abscission (IDA)-like 3 NA NA NA NA NA NA NA ENOG411EG2X CPC O22059 CPC_ARATH Transcription factor CPC (Protein CAPRICE) Abnormal root hairs-K. Okada-1997 FUNCTION: Transcription factor. Determines the fate of epidermal cell differentiation. Represses trichome development by lateral inhibition. Together with GL3 or BHLH2, promotes the formation of hair developing cells (H position) in root epidermis, probably by inhibiting non-hair cell formation. Represses the expression of GL2 and WER in H cells. Positively regulates stomatal formation in the hypocotyl (PubMed:19513241). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:12356720, ECO:0000269|PubMed:16291794, ECO:0000269|PubMed:19513241, ECO:0000269|PubMed:9262483}. 11385 Transcription factor CPC (Protein CAPRICE) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; epidermal cell differentiation [GO:0009913]; multicellular organism development [GO:0007275]; positive regulation of trichoblast fate specification [GO:0010063]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in leaves primordia and later confined to trichomes. {ECO:0000269|PubMed:12356720}. TISSUE SPECIFICITY: Expressed in trichomes and in young developing leaves, as well as in root hair and stele cells (pericycle and vascular tissues). Expressed in epidermal root hairless cells (atrichoblasts) and moves to root hair cells (trichoblasts) by a cell-to-cell movement through plasmodesmata (at protein level). {ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16291794}. locus:2005503; AT2G46410 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EG2Y Q9MAD3 Q9MAD3_ARATH Splicing regulatory glutamine/lysine-rich-like protein (T4P13.7 protein) (Uncharacterized protein At3g01240) 14664 Splicing regulatory glutamine/lysine-rich-like protein (T4P13.7 protein) (Uncharacterized protein At3g01240) locus:2102177; AT3G01240 NA NA NA NA NA NA NA NA ENOG411EG2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0105300 protein Q5VS75 Q5VS75_ORYSJ Os06g0105300 Os06g0105300 OSNPB_060105300 P0644B06.21 ENOG411EG2F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 47 NA NA NA NA NA NA NA ENOG411EG2J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EG2H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carb_anhydrase Os09g0454500 protein (Putative nectarin III) (cDNA clone:002-175-D12, full insert sequence) Q67UA4 Q67UA4_ORYSJ Os09g0454500 OSNPB_090454500 P0025H07.5 ENOG411E65R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA non-specific lipid-transfer NA NA NA NA NA NA NA ENOG411E65N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem protein, expressed (Os11g0146900 protein),Os11g0545900 protein,Os10g0177000 protein Q2RAL8,B9GB44,A0A0P0XS51 Q2RAL8_ORYSJ,B9GB44_ORYSJ,A0A0P0XS51_ORYSJ Os11g0146900 LOC_Os11g04960 OsJ_32956 OSNPB_110146900,Os11g0545900 OsJ_34193 OSNPB_110545900,Os10g0177000 OSNPB_100177000 ENOG411E8CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Antibiotic biosynthesis monooxygenase NA NA NA NA NA NA NA ENOG411E8CD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8CR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0472700 protein (Fragment),Os02g0472500 protein,Os02g0472566 protein (Fragment) A0A0P0VIW6,A0A0P0VIW1,A0A0P0VIY0 A0A0P0VIW6_ORYSJ,A0A0P0VIW1_ORYSJ,A0A0P0VIY0_ORYSJ Os02g0472700 OSNPB_020472700,Os02g0472500 OSNPB_020472500,Os02g0472566 OSNPB_020472566 ENOG411ECUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8CQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TUDOR NA NA NA NA NA NA NA ENOG411ECUZ Q9LTM8,A0A1I9LMY2,A0A1I9LMY1 Q9LTM8_ARATH,A0A1I9LMY2_ARATH,A0A1I9LMY1_ARATH Cellulase (Glycosyl hydrolase family 5) protein 56546,59812,64798 Cellulase (Glycosyl hydrolase family 5) protein hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2093571; AT3G26140 (glycosyl hydrolase family 5) protein NA NA NA NA NA NA NA ENOG411ECUY Q1PEN8,Q9LHQ0,Q9LHQ1,Q9LHQ2 FB168_ARATH,FBK64_ARATH,FB169_ARATH,Q9LHQ2_ARATH F-box protein At3g20690,Putative F-box/kelch-repeat protein At3g20710,Putative F-box protein At3g20705,F-box associated ubiquitination effector family protein 43123,42140,25898,38200 F-box protein At3g20690,Putative F-box/kelch-repeat protein At3g20710,Putative F-box protein At3g20705,F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2083450;,locus:2083455;,locus:2083445; AT3G20690,AT3G20710,AT3G20705,AT3G20700 F-box associated NA NA NA NA NA NA NA ENOG411ECUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Intracellular phospholipase B that catalyzes the double deacylation of phosphatidylcholine (PC) to glycerophosphocholine (GroPCho). Plays an important role in membrane lipid homeostasis. Responsible for the rapid PC turnover in response to inositol elevated temperatures or when choline is present in the growth medium (By similarity) NA NA NA NA NA NA NA ENOG411EHZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECU7 GAUT6,GAUT5 Q9M9Y5,Q8RXE1,F4IDS0 GAUT6_ARATH,GAUT5_ARATH,F4IDS0_ARATH Probable galacturonosyltransferase 6 (EC 2.4.1.-),Probable galacturonosyltransferase 5 (EC 2.4.1.-) (Like glycosyl transferase 5),Hexosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: Reduced galacturonic acid content in cell wall. {ECO:0000269|PubMed:19825675}.,DISRUPTION PHENOTYPE: No changes in the cell wall content. {ECO:0000269|PubMed:19825675}. Abnormal xylan and pectin levels in cell walls-D. Mohnen-2009 FUNCTION: Probably involved in pectin biosynthesis in cell walls. {ECO:0000269|PubMed:19825675}.,FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis.,PATHWAY: Glycan metabolism; pectin biosynthesis. {ECO:0000256|RuleBase:RU362027}. 2.4.1.- 67537,69886,69164 Probable galacturonosyltransferase 6 (EC 2.4.1.-),Probable galacturonosyltransferase 5 (EC 2.4.1.-) (Like glycosyl transferase 5),Hexosyltransferase (EC 2.4.1.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489],Golgi membrane [GO:0000139]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489] TISSUE SPECIFICITY: Expressed in roots, inflorescences, siliques, leaves and stems. {ECO:0000269|PubMed:19825675}. locus:504955915;,locus:2033092; AT1G06780,AT2G30575 Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411ECU4 F18L15.140,F18L15.90 Q9SNA3,Q9SN97,Q9SNA0,F4J810,A0A1I9LTT1,F4J927 Y3463_ARATH,Q9SN97_ARATH,Q9SNA0_ARATH,F4J810_ARATH,A0A1I9LTT1_ARATH,F4J927_ARATH Putative receptor-like protein kinase At3g46340 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein (Uncharacterized protein F18L15.140),Leucine-rich repeat protein kinase family protein (Receptor-like protein kinase homolog),LRR receptor-like Serine/Threonine-kinase,Leucine-rich repeat protein kinase family protein 2.7.11.1 99553,93772,88808,50142,32515,99269 Putative receptor-like protein kinase At3g46340 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein (Uncharacterized protein F18L15.140),Leucine-rich repeat protein kinase family protein (Receptor-like protein kinase homolog),LRR receptor-like Serine/Threonine-kinase,Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; kinase activity [GO:0016301],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2078186;,locus:2078191;,locus:2078216;,locus:2078171; AT3G46340,AT3G46420,AT3G46370,AT3G46350,AT3G46400 Leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411ECU2 TPS22,TPS25,TPS29,TPS19,TPS30,TPS17,TPS18 Q9LQ27,Q9LIA1,Q9C6W6,Q9LUE0,Q9LH31,Q9LRR2,Q9LUE2,A0A1P8AMI7,A0A1I9LLD7,A0A1P8AMI5,A0A1I9LLB9 TPS22_ARATH,TPS25_ARATH,TPS29_ARATH,TPS19_ARATH,TPS30_ARATH,TPS17_ARATH,TPS18_ARATH,A0A1P8AMI7_ARATH,A0A1I9LLD7_ARATH,A0A1P8AMI5_ARATH,A0A1I9LLB9_ARATH Terpenoid synthase 22 (AtTPS22) (EC 4.2.3.-),Terpenoid synthase 25 (AtTPS25) (EC 4.2.3.-),Terpenoid synthase 29 (AtTPS29) (EC 4.2.3.-),Terpenoid synthase 19 (AtTPS19) (EC 4.2.3.-),Terpenoid synthase 30 (AtTPS30) (EC 4.2.3.-),Terpenoid synthase 17 (AtTPS17) (EC 4.2.3.-),Terpenoid synthase 18 (AtTPS18) (EC 4.2.3.-),Terpenoid cyclases/Protein prenyltransferases superfamily protein FUNCTION: Involved in terpene biosynthesis in roots. Possesses sesquiterpene (C15) synthase activity in vitro. Does not seem to be involved in diterpene (C20) biosynthesis. {ECO:0000269|PubMed:27933080}.,FUNCTION: Involved in terpene biosynthesis in roots. Possesses sesquiterpene (C15) synthase activity and diterpene (C20) synthase activity in vitro. {ECO:0000269|PubMed:27933080}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT1G33750-MONOMER;,ARA:AT3G29410-MONOMER;,ARA:AT3G14540-MONOMER;,ARA:AT3G32030-MONOMER;,ARA:AT3G14490-MONOMER;,ARA:AT3G14520-MONOMER; 4.2.3.- 69875,70225,70324,69187,69812,70179,69410,70423,58195,60860,58207 Terpenoid synthase 22 (AtTPS22) (EC 4.2.3.-),Terpenoid synthase 25 (AtTPS25) (EC 4.2.3.-),Terpenoid synthase 29 (AtTPS29) (EC 4.2.3.-),Terpenoid synthase 19 (AtTPS19) (EC 4.2.3.-),Terpenoid synthase 30 (AtTPS30) (EC 4.2.3.-),Terpenoid synthase 17 (AtTPS17) (EC 4.2.3.-),Terpenoid synthase 18 (AtTPS18) (EC 4.2.3.-),Terpenoid cyclases/Protein prenyltransferases superfamily protein cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpenoid biosynthetic process [GO:0016114],cytoplasm [GO:0005737]; membrane [GO:0016020]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpenoid biosynthetic process [GO:0016114],magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; transferase activity [GO:0016740]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Predominantly expressed in siliques but also in flowers. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Predominantly expressed in roots but also in flowers. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Predominantly expressed in flowers but also in siliques, roots, leaves and stems. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Predominantly expressed in flowers and siliques but also in roots and leaves. {ECO:0000269|PubMed:12566586}.,TISSUE SPECIFICITY: Expressed exclusively in flowers. {ECO:0000269|PubMed:12566586}. locus:2012668;,locus:2093812;,locus:2034511;,locus:2089631;,locus:2114414;,locus:2091687;,locus:2089536; AT1G33750,AT3G29410,AT1G31950,AT3G14540,AT3G32030,AT3G14490,AT3G14520 Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411ECU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EHNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EHNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin family NA NA NA NA NA NA NA ENOG411EHNS Q9ZPQ7 Q9ZPQ7_ARATH At2g03740 (Late embryogenesis abundant domain-containing protein / LEA domain-containing protein) (Late embryogenesis abundant domain-containing protein/LEA domain-containing protein) (Putative cold-regulated protein) 20017 At2g03740 (Late embryogenesis abundant domain-containing protein / LEA domain-containing protein) (Late embryogenesis abundant domain-containing protein/LEA domain-containing protein) (Putative cold-regulated protein) chloroplast [GO:0009507] locus:2044194; AT2G03740 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EHNY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TR_FER NA NA NA NA NA NA NA ENOG411EHNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: zinc finger NA NA NA NA NA NA NA ENOG411EHNM Q2V3X3 DF311_ARATH Defensin-like protein 311 8871 Defensin-like protein 311 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023304; AT3G10195 NA NA NA NA NA NA NA NA ENOG411EHNN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os04g0659200 protein,Os10g0432200 protein (Fragment) A0A0P0WFZ4,A0A0P0XUY7 A0A0P0WFZ4_ORYSJ,A0A0P0XUY7_ORYSJ Os04g0659200 OSNPB_040659200,Os10g0432200 OSNPB_100432200 ENOG411EHN5 AGP17 O22194,Q3EBV5 AGP17_ARATH,Q3EBV5_ARATH Lysine-rich arabinogalactan protein 17 (Lys-rich AGP 17),Arabinogalactan protein 17 No visible phenotype. FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. 18481,16167 Lysine-rich arabinogalactan protein 17 (Lys-rich AGP 17),Arabinogalactan protein 17 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Predominanlty expressed in open flowers. Also expressed in leaves and stems, and at a lower level in roots. {ECO:0000269|PubMed:15286287, ECO:0000269|PubMed:15840645}. locus:2045309; AT2G23130 NA NA NA NA NA NA NA NA ENOG411EHN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0352066 protein A0A0P0W904 A0A0P0W904_ORYSJ Os04g0352066 OSNPB_040352066 ENOG411EHN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EHN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EHN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CS domain NA NA NA NA NA NA NA ENOG411EHN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4AI O80741,Q501G5,Q9LV26,Q9FVT4 FB351_ARATH,FB250_ARATH,FBL45_ARATH,FB63_ARATH Probable F-box protein At1g60180,F-box protein At5g03100,Putative F-box/LRR-repeat protein At3g18150,Putative F-box protein At1g57690 36710,34836,52502,37940 Probable F-box protein At1g60180,F-box protein At5g03100,Putative F-box/LRR-repeat protein At3g18150,Putative F-box protein At1g57690 locus:2143463;,locus:2092737;,locus:2206515; AT1G60180,AT5G03100,AT3G18150,AT1G57690 f-box family NA NA NA NA NA NA NA ENOG411E4AJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor NA NA NA NA NA NA NA ENOG411E4AK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein NA NA NA NA NA NA NA ENOG411E4AE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0483100 protein (cDNA clone:J013101A13, full insert sequence) Q6ZFE6 Q6ZFE6_ORYSJ Os08g0483100 Os08g0483100 OJ1111_H02.18 OSNPB_080483100 ENOG411E4AW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os03g0183200 protein Q0DUJ5 Q0DUJ5_ORYSJ Os03g0183200 Os03g0183200 OSNPB_030183200 ENOG411E574 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Cleaves proteins imported into the mitochondrion to their mature size. While most mitochondrial precursor proteins are processed to the mature form in one step by mitochondrial processing peptidase (MPP) the sequential cleavage by MIP of an octapeptide after initial processing by MPP is a required step for a subgroup of nuclear-encoded precursor proteins destined for the matrix or the inner membrane NA NA NA NA NA NA NA ENOG411E57P ZCF37 Q9SLT9,F4I498,F4I499 Q9SLT9_ARATH,F4I498_ARATH,F4I499_ARATH At1g59590 (T30E16.15) (Uncharacterized protein At1g59590) (ZCF37) (ZCF37 protein),ZCF37 23960,23883,25199 At1g59590 (T30E16.15) (Uncharacterized protein At1g59590) (ZCF37) (ZCF37 protein),ZCF37 integral component of membrane [GO:0016021] locus:2202907;,locus:2012818; AT1G59590,AT1G10220 NA Os03g0432000 protein Q75KR0 Q75KR0_ORYSJ Os03g0432000 LOC_Os03g31740 OSJNBa0036E17.11 OSNPB_030432000 ENOG411E57Y Q9SKR7 Q9SKR7_ARATH At2g20940 (Expressed protein) (Transmembrane protein, putative (DUF1279)) 14143 At2g20940 (Expressed protein) (Transmembrane protein, putative (DUF1279)) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2047022; AT2G20940 Protein of unknown function (DUF1279) NA NA NA NA NA NA NA ENOG411E57B ACP4 Q9SW21,F4JRT7 ACP4_ARATH,F4JRT7_ARATH Acyl carrier protein 4, chloroplastic,Acyl carrier protein 4 DISRUPTION PHENOTYPE: Small and chlorotic plants with altered cuticule and reduced levels of fatty acids in leaves. {ECO:0000269|PubMed:19218086}. Mutants have light green leaves altered Fv/Fm (photosynthetic electron transport) and decreased leaf 16:3 fatty acids. Pale green; Dwarf; Slow growth; Small, chlorotic rosette; Altered fatty acid composition; Altered systemic acquired resistance response-R. Last-2009 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis that plays a major role in the biosynthesis of fatty acids in leaves. Required for the biosynthesis of chloroplast photosynthetic membrane lipids such as monogalactosyldiacylglycerol, digalactosyldiacylglycerol and phosphatidylglycerol. Is essential for the biosynthesis of the cuticular wax and cutin polymers in leaves, and for the establishment of systemic acquired resistance (SAR). {ECO:0000269|PubMed:12805604, ECO:0000269|PubMed:19218086}. 14544,15938 Acyl carrier protein 4, chloroplastic,Acyl carrier protein 4 chloroplast [GO:0009507]; cytosol [GO:0005829]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; cuticle development [GO:0042335]; fatty acid biosynthetic process [GO:0006633]; lipid A biosynthetic process [GO:0009245]; systemic acquired resistance [GO:0009627],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; fatty acid biosynthetic process [GO:0006633]; response to cytokinin [GO:0009735]; response to light stimulus [GO:0009416] locus:2117323; AT4G25050 Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein Q2R3H6 Q2R3H6_ORYSJ LOC_Os11g31900 Os11g0521500 OsJ_34059 OSNPB_110521500 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E57G Q7XA70 Q7XA70_ARATH At5g07475 (Cupredoxin superfamily protein) (Uncharacterized protein At5g07475) 21014 At5g07475 (Cupredoxin superfamily protein) (Uncharacterized protein At5g07475) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:504956334; AT5G07475 Blue copper OSJNBa0079A21.6 protein (OSJNBb0038F03.17 protein) (Os04g0545400 protein) Q7X7J3 Q7X7J3_ORYSJ OSJNBa0079A21.6 Os04g0545400 OSJNBb0038F03.17 OSNPB_040545400 ENOG411E57D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flowering-promoting factor 1-like protein Flowering-promoting factor 1-like protein 3 (FPF1-like protein 3) Q0E1D7 FLP3_ORYSJ Os02g0460200 LOC_Os02g26210 OsJ_06629 ENOG411E57J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof-type zinc finger protein Dof zinc finger protein 5 (OsDof5) Q5JLR7 DOF5_ORYSJ DOF5 Os01g0758200 LOC_Os01g55340 B1131G08.10 FUNCTION: Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. ENOG411E57I ERF013 Q9CAP4 ERF13_ARATH Ethylene-responsive transcription factor ERF013 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 26981 Ethylene-responsive transcription factor ERF013 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2204730; AT1G77640 Transcription factor NA NA NA NA NA NA NA ENOG411E57M Q8GXH5 Q8GXH5_ARATH 37S ribosomal protein S27 (Uncharacterized protein At5g44710) (Uncharacterized protein At5g44710/K23L20_5) 11529 37S ribosomal protein S27 (Uncharacterized protein At5g44710) (Uncharacterized protein At5g44710/K23L20_5) mitochondrion [GO:0005739]; ribosome [GO:0005840] locus:2156359; AT5G44710 Mitochondral 37S ribosomal protein Os05g0148300 protein (cDNA clone:001-102-G06, full insert sequence) Q6ASQ4 Q6ASQ4_ORYSJ Os05g0148300 Os05g0148300 OsJ_17119 OSJNBa0077J22.19 OSNPB_050148300 ENOG411E81Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lycopene cyclase protein NA NA NA NA NA NA NA ENOG411EM74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA anion transporter Probable anion transporter 7 (Phosphate transporter 4;7),Probable anion transporter 6 (Phosphate transporter 4;6),Os11g0186800 protein (Fragment),Os12g0180100 protein (Fragment) Q2QWW7,Q53P54,A0A0P0Y0H7,A0A0P0Y7L3 PHT47_ORYSJ,PHT46_ORYSJ,A0A0P0Y0H7_ORYSJ,A0A0P0Y7L3_ORYSJ PHT4;7 Os12g0180100 LOC_Os12g07970,PHT4;6 Os11g0186800 LOC_Os11g08370 OsJ_33231,Os11g0186800 OSNPB_110186800,Os12g0180100 OSNPB_120180100 FUNCTION: Probable anion transporter. {ECO:0000250}.,FUNCTION: Probable anion transporter. ENOG411EM7Z F4K639,A0A1P8AZS1,A0A1P8AZR4,A0A1P8AZQ7,F4IL43,F4IL44 F4K639_ARATH,A0A1P8AZS1_ARATH,A0A1P8AZR4_ARATH,A0A1P8AZQ7_ARATH,F4IL43_ARATH,F4IL44_ARATH WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein,WD40 domain-containing protein R-ATH-1266695;R-ATH-3247509; 186920,151706,150694,172549,171537,171450 WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein,WD40 domain-containing protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; cytoskeleton organization [GO:0007010]; regulation of cell shape [GO:0008360]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2158044;,locus:2061997; AT5G49430,AT2G47410 Bromodomain NA NA NA NA NA NA NA ENOG411EM7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like NA NA NA NA NA NA NA ENOG411EHHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHHI A8MRQ5,F4JLV4,F4JLV7 A8MRQ5_ARATH,F4JLV4_ARATH,F4JLV7_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein ARA:GQT-399-MONOMER; 68200,38790,55218 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein peptidase activity [GO:0008233] locus:4010713901;,locus:2127460;,locus:4010713902; AT4G22485,AT4G22470,AT4G22505 NA NA NA NA NA NA NA NA ENOG411EHHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NA NA NA NA NA NA NA ENOG411ED9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ras family NA NA NA NA NA NA NA ENOG411ED9E MQB2.10 Q84TH2,F4K7T4,F4JT89 Q84TH2_ARATH,F4K7T4_ARATH,F4JT89_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At4g19570),Chaperone DnaJ-domain superfamily protein,DNAJ heat shock N-terminal domain-containing protein 62946,22937,35603 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At4g19570),Chaperone DnaJ-domain superfamily protein,DNAJ heat shock N-terminal domain-containing protein locus:2122950;,locus:2170758;,locus:2122960; AT4G19570,AT5G62780,AT4G19580 Inherit from KOG: DnaJ (Hsp40) homolog subfamily C member NA NA NA NA NA NA NA ENOG411ED9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase Os12g0502400 protein (Phosphoserine phosphatase, putative, expressed) (cDNA clone:002-174-E12, full insert sequence) Q2QQ95 Q2QQ95_ORYSJ LOC_Os12g31820 Os12g0502400 OsJ_36197 OSNPB_120502400 ENOG411ED9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ED9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os03g0781800 protein A0A0P0W3Q8 A0A0P0W3Q8_ORYSJ Os03g0781800 OSNPB_030781800 ENOG411ED9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: synthase NA NA NA NA NA NA NA ENOG411ED9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED9I AOC1,AOC2,AOC3 Q9LS03,Q9LS02,Q9LS01 AOC1_ARATH,AOC2_ARATH,AOC3_ARATH Allene oxide cyclase 1, chloroplastic (EC 5.3.99.6) (Early-responsive to dehydration 12 protein),Allene oxide cyclase 2, chloroplastic (EC 5.3.99.6),Allene oxide cyclase 3, chloroplastic (EC 5.3.99.6) FUNCTION: Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid. MISCELLANEOUS: The four allene oxide cyclase proteins (AOC1, AOC2, AOC3 and AOC4) are encoded by duplicated genes. They are very similar, and most experiments involving antibodies do not discriminate between the different members. ARA:AT3G25760-MONOMER;,ARA:AT3G25770-MONOMER;MetaCyc:AT3G25770-MONOMER;,ARA:AT3G25780-MONOMER; 5.3.99.6; 5.3.99.6 27802,27635,28398 Allene oxide cyclase 1, chloroplastic (EC 5.3.99.6) (Early-responsive to dehydration 12 protein),Allene oxide cyclase 2, chloroplastic (EC 5.3.99.6),Allene oxide cyclase 3, chloroplastic (EC 5.3.99.6) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; allene-oxide cyclase activity [GO:0046423]; jasmonic acid biosynthetic process [GO:0009695],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; stromule [GO:0010319]; allene-oxide cyclase activity [GO:0046423]; jasmonic acid biosynthetic process [GO:0009695]; response to cold [GO:0009409],chloroplast [GO:0009507]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; allene-oxide cyclase activity [GO:0046423]; jasmonic acid biosynthetic process [GO:0009695]; response to fungus [GO:0009620]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Highly expressed in fully developed leaves. {ECO:0000269|PubMed:12777050}. locus:2085999;,locus:2086009;,locus:2085974; AT3G25760,AT3G25770,AT3G25780 Involved in the production of 12-oxo-phytodienoic acid (OPDA) a precursor of jasmonic acid NA NA NA NA NA NA NA ENOG411ED9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED9K KIN14M,KIN14N,ATK3 P46864,P46875,A0A1P8BB82 KN14M_ARATH,KN14N_ARATH,A0A1P8BB82_ARATH Kinesin-like protein KIN-14M (AtKIN14c) (Kinesin-like protein KatB),Kinesin-like protein KIN-14N (AtKIN14d) (Kinesin-like protein KatC),Kinesin-like protein ARA:GQT-2429-MONOMER;,ARA:AT5G54670-MONOMER; 84359,85030,78489 Kinesin-like protein KIN-14M (AtKIN14c) (Kinesin-like protein KatB),Kinesin-like protein KIN-14N (AtKIN14d) (Kinesin-like protein KatC),Kinesin-like protein cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2136437;,locus:2157533; AT4G27180,AT5G54670 KISc NA NA NA NA NA NA NA ENOG411ED9T UGE4 Q9C7W7 UGE4_ARATH UDP-glucose 4-epimerase 4 (AtUGE4) (EC 5.1.3.2) (Protein ROOT EPIDERMAL BULGER 1) (Protein ROOT HAIR DEFECTIVE 1) (UDP-galactose 4-epimerase 4) DISRUPTION PHENOTYPE: Root epidermal bulging. Partially deficient in cell wall arabinogalactan-protein (AGP). Abnormal trichoblast cell wall. Uge2 and uge4 double mutant displays a reduction in rosette and root growth, hypocotyl elongation, and secondary hypocotyl thickening (PubMed:17496119). {ECO:0000269|PubMed:12355155, ECO:0000269|PubMed:12419184, ECO:0000269|PubMed:17496119, ECO:0000269|PubMed:9431677, ECO:0000269|Ref.4}. Decrease root length (54% of that of wildtype) when grown on D-galactose-free medium.,Bulging epidermal cells on the roots. The percentage of these cells appears to be dependent on environmental conditions (light intensity for example). This phenotype is not observed in the meristem but is first observed basal of the meristem.,Decreased root length (67% of that of wildtype) when grown on D-galactose-free medium.,Less galactose in root cell wall compared to wildtype. No difference in shoot cell wall monosaccharide composition.,No observed effect of the structure of both rhamnogalacturonan I and II.,Root growth significantly diminished.,Root length defect was restored when mutant was grown on 10mM galactose.,Structural changes of xyloglucan in roots not in shoots.,Using the monoclonal antibody CCRC-M1 specific for &,At 18ºC the phenotype is indistinguishable from that of wildtype.,At the restrictive temperature epidermal bulging is observed and roots fail to grow straight in the elongation zone although this mutation does not appear to abolish gravitropic sensitivity.,Temperature sensitive (33ºC) phenotype.,Phenotype not described. Abnormal root hairs; Bulging root epidermis-K. Roberts-2002 FUNCTION: Catalyzes the interconversion between UDP-glucose and UDP-galactose. Involved in channeling UDP-D-galactose (UDP-D-Gal) into cell wall polymers. Required for the galactosylation of xyloglucan (XyG) and type II arabinogalactan (AGII). Cooperates with UGE2 in cell wall carbohydrate biosynthesis and growth. {ECO:0000269|PubMed:12419184, ECO:0000269|PubMed:14973160, ECO:0000269|PubMed:16500990, ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119, ECO:0000269|PubMed:19754426}. PATHWAY: Carbohydrate metabolism; galactose metabolism. R-ATH-70370; 5.1.3.2;5.1.3.5; 5.1.3.2 38123 UDP-glucose 4-epimerase 4 (AtUGE4) (EC 5.1.3.2) (Protein ROOT EPIDERMAL BULGER 1) (Protein ROOT HAIR DEFECTIVE 1) (UDP-galactose 4-epimerase 4) Golgi stack [GO:0005795]; UDP-glucose 4-epimerase activity [GO:0003978]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; galactose metabolic process [GO:0006012]; plant-type cell wall biogenesis [GO:0009832]; root epidermal cell differentiation [GO:0010053]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12419184, ECO:0000269|PubMed:16644739, ECO:0000269|PubMed:17496119}. locus:2014235; AT1G64440 RmlD substrate binding domain NA NA NA NA NA NA NA ENOG411ED9U Q9C8C8 Q9C8C8_ARATH Uncharacterized protein F15E12.13 30166 Uncharacterized protein F15E12.13 locus:2013870; AT1G66190 NA NA NA NA NA NA NA NA ENOG411ED9V CRK32,CRK31 Q9LDS6,Q9LDM5,A0A1P8B3Z5,A0A1P8B3Z3,A0A1P8B3Z6,A0A1P8B6E4 CRK32_ARATH,CRK31_ARATH,A0A1P8B3Z5_ARATH,A0A1P8B3Z3_ARATH,A0A1P8B3Z6_ARATH,A0A1P8B6E4_ARATH Putative cysteine-rich receptor-like protein kinase 32 (Cysteine-rich RLK32) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 31 (Cysteine-rich RLK31) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 32,Cysteine-rich RLK (RECEPTOR-like protein kinase) 31 2.7.11.- 73695,74674,73044,55022,72776,75306 Putative cysteine-rich receptor-like protein kinase 32 (Cysteine-rich RLK32) (EC 2.7.11.-),Putative cysteine-rich receptor-like protein kinase 31 (Cysteine-rich RLK31) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 32,Cysteine-rich RLK (RECEPTOR-like protein kinase) 31 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2123056;,locus:2123126; AT4G11480,AT4G11470 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ED9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain Os04g0108600 protein (Fragment) A0A0P0W6H1 A0A0P0W6H1_ORYSJ Os04g0108600 OSNPB_040108600 ENOG411ED9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ED9Q PYL10 Q8H1R0 PYL10_ARATH Abscisic acid receptor PYL10 (ABI1-binding protein 8) (PYR1-like protein 10) (Regulatory components of ABA receptor 4) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) in an ABA-independent manner but more efficiently when activated by ABA (PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). {ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015}. 20642 Abscisic acid receptor PYL10 (ABI1-binding protein 8) (PYR1-like protein 10) (Regulatory components of ABA receptor 4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of protein serine/threonine phosphatase activity [GO:0080163] locus:2132917; AT4G27920 Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411ED9R Q93VG3 Q93VG3_ARATH AT5g19120/T24G5_20 (Eukaryotic aspartyl protease family protein) 40704 AT5g19120/T24G5_20 (Eukaryotic aspartyl protease family protein) aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2182187; AT5G19120 Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411ED9S ATS3 Q9LYP6,B9DGU8 ATS3_ARATH,B9DGU8_ARATH Embryo-specific protein ATS3 (Protein ARABIDOPSIS THALIANA SEED 3),AT5G07190 protein (Embryo-specific protein 3) FUNCTION: May play a role during embryo development. {ECO:0000305}. 23083,19874 Embryo-specific protein ATS3 (Protein ARABIDOPSIS THALIANA SEED 3),AT5G07190 protein (Embryo-specific protein 3) anchored component of membrane [GO:0031225]; extracellular region [GO:0005576]; membrane [GO:0016020]; embryo development ending in seed dormancy [GO:0009793] DEVELOPMENTAL STAGE: Expressed from the late torpedo stage to late cotyledon stage in developing embryo. {ECO:0000269|PubMed:10380802}. TISSUE SPECIFICITY: Expressed in seeds. Expression is restricted to the developing embryo. {ECO:0000269|PubMed:10380802}. locus:2182865; AT5G07190 Embryo-specific protein 3 (ATS3) NA NA NA NA NA NA NA ENOG411ED9X F2I11_300 Q9LFL7,Q9LFL6,A6QRB5,A0A1P8BCD9,F4JWH8,F4JXU7,A8MQZ9 Y5140_ARATH,Q9LFL6_ARATH,A6QRB5_ARATH,A0A1P8BCD9_ARATH,F4JWH8_ARATH,F4JXU7_ARATH,A8MQZ9_ARATH Putative inactive serine/threonine-protein kinase At5g11400,Protein kinase superfamily protein (Uncharacterized protein F2I11_300),At5g11360 (Interleukin-1 receptor-associated kinase 4 protein),Protein kinase superfamily protein,Interleukin-1 receptor-associated kinase 4 protein 37870,38399,22161,28189,22290,23486,21290 Putative inactive serine/threonine-protein kinase At5g11400,Protein kinase superfamily protein (Uncharacterized protein F2I11_300),At5g11360 (Interleukin-1 receptor-associated kinase 4 protein),Protein kinase superfamily protein,Interleukin-1 receptor-associated kinase 4 protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],kinase activity [GO:0016301],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],plasma membrane [GO:0005886]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2148062;,locus:2147977;,locus:2148017; AT5G11400,AT5G11410,AT5G11360 kinase family NA NA NA NA NA NA NA ENOG411ED9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PX NA NA NA NA NA NA NA ENOG411ED9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphorylated CTD interacting factor 1 WW domain NA NA NA NA NA NA NA ENOG411ED94 RABA1E O49513,Q3E8G1 RAA1E_ARATH,Q3E8G1_ARATH Ras-related protein RABA1e (AtRABA1e),Ras-related small GTP-binding family protein FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-5620916;R-ATH-8873719; 24330,13288 Ras-related protein RABA1e (AtRABA1e),Ras-related small GTP-binding family protein plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],endosome [GO:0005768]; GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2124593;,locus:504954951; AT4G18430,AT5G46025 RAB NA NA NA NA NA NA NA ENOG411ED95 ERF1-1 Q39097 ERF1X_ARATH Eukaryotic peptide chain release factor subunit 1-1 (Eukaryotic release factor 1-1) (eRF1-1) (Omnipotent suppressor protein 1 homolog 1) (SUP1 homolog 1) FUNCTION: Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (PubMed:15474304). Modulates plant growth and development (PubMed:16113224). {ECO:0000269|PubMed:16113224, ECO:0000303|PubMed:15474304}. R-ATH-72764;R-ATH-975956;R-ATH-975957; 48723 Eukaryotic peptide chain release factor subunit 1-1 (Eukaryotic release factor 1-1) (eRF1-1) (Omnipotent suppressor protein 1 homolog 1) (SUP1 homolog 1) cytoplasm [GO:0005737]; translation release factor activity [GO:0003747]; regulation of growth [GO:0040008]; translational termination [GO:0006415] locus:2160972; AT5G47880 eukaryotic release factor 1-1 NA NA NA NA NA NA NA ENOG411ED96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPFH domain / Band 7 family NA NA NA NA NA NA NA ENOG411ED97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ED90 IMPA6,IMPA-6 Q9FWY7,F4HXL3 IMPA6_ARATH,F4HXL3_ARATH Importin subunit alpha-6 (IMPa-6),Importin subunit alpha FUNCTION: Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity). Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium, but is not essential for Agrobacterium-mediated root transformation (PubMed:18836040). {ECO:0000250|UniProtKB:Q96321, ECO:0000269|PubMed:18836040}.,FUNCTION: Binds to conventional NLS motifs. {ECO:0000256|PIRNR:PIRNR005673}. 59389,59517 Importin subunit alpha-6 (IMPa-6),Importin subunit alpha cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607],cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein transporter activity [GO:0008565]; protein import into nucleus [GO:0006606] locus:2196140; AT1G02690 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (By similarity) NA NA NA NA NA NA NA ENOG411ED91 Q9SI42 Q9SI42_ARATH At2g13350 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Uncharacterized protein At2g13350) 44160 At2g13350 (Calcium-dependent lipid-binding (CaLB domain) family protein) (Uncharacterized protein At2g13350) locus:2041654; AT2G13350 C2 domain NA NA NA NA NA NA NA ENOG411ED92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Acyltransferase NA NA NA NA NA NA NA ENOG411ED93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily (RAP Annotation release2) 2OG-Fe(II) oxygenase domain containing protein (Os10g0558700 protein) (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (Putative dioxygenase) (Putative ethylene-forming enzyme),Os10g0558700 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (cDNA clone:J013070M10, full insert sequence),Flavonol synthase/flavanone 3-hydroxylase, putative, expressed (Os10g0559200 protein) (cDNA clone:J013063G04, full insert sequence),Os10g0558750 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed),Os10g0558900 protein,Os10g0558700 protein,Os10g0558400 protein (Fragment),Os11g0129400 protein Q94LP4,Q336T2,Q336S9,Q336T0,A0A0P0XX70,A0A0P0XXF8,A0A0P0XX31,A0A0P0XY90 Q94LP4_ORYSJ,Q336T2_ORYSJ,Q336S9_ORYSJ,Q336T0_ORYSJ,A0A0P0XX70_ORYSJ,A0A0P0XXF8_ORYSJ,A0A0P0XX31_ORYSJ,A0A0P0XY90_ORYSJ OSJNBa0042H09.28 LOC_Os10g40934 Os10g0558700 OsJ_32437 OSJNBa0010C11.19 OSNPB_100558700,Os10g0558700 LOC_Os10g40934 OSNPB_100558700,LOC_Os10g40990 Os10g0559200 OSNPB_100559200,Os10g0558750 LOC_Os10g40934 Os10g0558750 OSNPB_100558750,Os10g0558900 OSNPB_100558900,Os10g0558700 OSNPB_100558700,Os10g0558400 OSNPB_100558400,Os11g0129400 OSNPB_110129400 ENOG411ED98 Q9C9J0,A0A1P8BGM4,A0A1P8ANJ9 LHTL5_ARATH,A0A1P8BGM4_ARATH,A0A1P8ANJ9_ARATH Lysine histidine transporter-like 5,Lysine histidine transporter-like protein,Transmembrane amino acid transporter family protein FUNCTION: Amino acid transporter. {ECO:0000250}. 49794,12562,40317 Lysine histidine transporter-like 5,Lysine histidine transporter-like protein,Transmembrane amino acid transporter family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021] locus:2013056; AT1G71680 Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411ED99 KAT1 Q8LF48 THIK1_ARATH 3-ketoacyl-CoA thiolase 1, peroxisomal (EC 2.3.1.16) (Acetyl-CoA acyltransferase 1) (Beta-ketothiolase 1) (Peroxisomal 3-oxoacyl-CoA thiolase 1) FUNCTION: Involved in fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth. Implicated in jasmonic acid (JA) biosynthesis (By similarity). {ECO:0000250}. PATHWAY: Lipid metabolism; fatty acid metabolism. R-ATH-2046106;R-ATH-390247;R-ATH-6798695; 2.3.1.16 46611 3-ketoacyl-CoA thiolase 1, peroxisomal (EC 2.3.1.16) (Acetyl-CoA acyltransferase 1) (Beta-ketothiolase 1) (Peroxisomal 3-oxoacyl-CoA thiolase 1) peroxisome [GO:0005777]; vacuole [GO:0005773]; acetyl-CoA C-acyltransferase activity [GO:0003988]; oxylipin biosynthetic process [GO:0031408] TISSUE SPECIFICITY: Low levels in seedlings and leaves. {ECO:0000269|PubMed:11696182, ECO:0000269|PubMed:15141068}. locus:2197778; AT1G04710 Thiolase C-terminal domain NA NA NA NA NA NA NA ENOG411DRCN C0LGQ9 Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 (EC 2.7.11.1) 2.7.11.1 112042 Probable LRR receptor-like serine/threonine-protein kinase At4g20940 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] AT4G20940 LRR receptor-like serine threonine-protein kinase Os07g0145400 protein (Putative phytosulfokine receptor) Q7EYF8 Q7EYF8_ORYSJ Os07g0145400 Os07g0145400 OSJNBa0077B15.117 OSNPB_070145400 ENOG411EM48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED NA NA NA NA NA NA NA ENOG411EM49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os07g0525300 protein,Os10g0443400 protein,Os02g0521366 protein A0A0P0X6L2,A0A0P0XUP5,A0A0P0VJT3 A0A0P0X6L2_ORYSJ,A0A0P0XUP5_ORYSJ,A0A0P0VJT3_ORYSJ Os07g0525300 OSNPB_070525300,Os10g0443400 OSNPB_100443400,Os02g0521366 OSNPB_020521366 ENOG411DVHQ Q9ZQQ1 Q9ZQQ1_ARATH Expressed protein (Transmembrane protein) (Uncharacterized protein At2g35790) 26415 Expressed protein (Transmembrane protein) (Uncharacterized protein At2g35790) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] locus:2039260; AT2G35790 Protein of unknown function (DUF1301) Os03g0853800 protein,Expressed protein (Os03g0853800 protein) (cDNA clone:006-206-F12, full insert sequence) (cDNA clone:J033112B07, full insert sequence),Os03g0853800 protein (Fragment) Q0DLP2,Q84T82,A0A0P0W5N5 Q0DLP2_ORYSJ,Q84T82_ORYSJ,A0A0P0W5N5_ORYSJ Os03g0853800 OSNPB_030853800,Os03g0853800 LOC_Os03g63680 Os03g63680 OsJ_13412 OSNPB_030853800 ENOG411DVHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os08g0527700 protein (Os08g0527733 protein),Os04g0691366 protein,Os08g0527700 protein,Os04g0691400 protein Q0J495,A0A0P0WGM7,A0A0P0XHZ8,A0A0P0WGM6 Q0J495_ORYSJ,A0A0P0WGM7_ORYSJ,A0A0P0XHZ8_ORYSJ,A0A0P0WGM6_ORYSJ Os08g0527733 Os08g0527700 OsJ_28024 OSNPB_080527733,Os04g0691366 OSNPB_040691366,Os08g0527700 OSNPB_080527700,Os04g0691400 OSNPB_040691400 ENOG411DVHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain UDP-glucose 4-epimerase 2 (OsUGE-2) (EC 5.1.3.2) (UDP-galactose 4-epimerase 2),UDP-glucose 4-epimerase 4 (OsUGE-4) (EC 5.1.3.2) (UDP-galactose 4-epimerase 4),Os09g0323000 protein (Fragment) Q6ZDJ7,Q6K2E1,A0A0N7KQK3 UGE2_ORYSJ,UGE4_ORYSJ,A0A0N7KQK3_ORYSJ UGE-2 Os08g0374800 LOC_Os08g28730 P0436B06.11,UGE-4 Os09g0323000 LOC_Os09g15420 OsJ_28859 OSJNBb0024J13.13-1,Os09g0323000 OSNPB_090323000 FUNCTION: Catalyzes the interconversion between UDP-glucose and UDP-galactose. {ECO:0000250}. ENOG411DVHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF500) LAs17 Binding protein-like (Os06g0552400 protein) (cDNA clone:J023127P05, full insert sequence),Os06g0552400 protein Q5Z9E4,A0A0P0WXV7 Q5Z9E4_ORYSJ,A0A0P0WXV7_ORYSJ P0427B07.10-1 Os06g0552400 OSNPB_060552400,Os06g0552400 OSNPB_060552400 ENOG411EKD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoribulokinase / Uridine kinase family NA NA NA NA NA NA NA ENOG411EKDX Q8VZL0 Q8VZL0_ARATH At1g77230 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g77230) 24715 At1g77230 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g77230) locus:2196015; AT1G77230 tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EKDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trehalose-phosphatase Probable trehalose-phosphate phosphatase 9 (OsTPP9) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Trehalose 6-phosphate phosphatase (EC 3.1.3.12) Q10KF5,A0A0P0VY83 TPP9_ORYSJ,A0A0P0VY83_ORYSJ TPP9 Os03g0386500 LOC_Os03g26910 OsJ_11091 OSJNBb0058G04.17,Os03g0386500 OSNPB_030386500 FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity). {ECO:0000250}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. {ECO:0000256|RuleBase:RU361117}. ENOG411EKDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trehalose-phosphatase Probable trehalose-phosphate phosphatase 4 (OsTPP4) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Probable trehalose-phosphate phosphatase 8 (OsTPP8) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase),Trehalose 6-phosphate phosphatase (EC 3.1.3.12) Q6ZGP8,Q0DDI1,A0A0P0WU42 TPP4_ORYSJ,TPP8_ORYSJ,A0A0P0WU42_ORYSJ TPP4 Os02g0753000 LOC_Os02g51680 OJ1288_G09.15 OsJ_08413,TPP8 Os06g0222100 LOC_Os06g11840 P0516A04.26,Os06g0222100 OSNPB_060222100 FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity). {ECO:0000250}.,FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. {ECO:0000256|RuleBase:RU361117}. ENOG411EKDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trehalose-phosphatase Probable trehalose-phosphate phosphatase 10 (OsTPP10) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) Q0D6F4 TPP10_ORYSJ TPP10 Os07g0485000 LOC_Os07g30160 OsJ_24268 FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity). {ECO:0000250}. ENOG411EKDV DJC76 Q9FMX6 DJC76_ARATH Chaperone protein dnaJ C76, chloroplastic (atDjC76) (AtDjC17) (AtJ17) DISRUPTION PHENOTYPE: Altered root hair development and reduced hair length. {ECO:0000269|PubMed:25339971}. FUNCTION: May function together with HSC70 chaperone to assist protein folding and prevent protein aggregation during salt stress in the chloroplast (Probable). Involved in root development. Required for the position-dependent cell fate determination during root hair development (PubMed:25339971). {ECO:0000269|PubMed:25339971, ECO:0000305|PubMed:23894646}. 51764 Chaperone protein dnaJ C76, chloroplastic (atDjC76) (AtDjC17) (AtJ17) chloroplast [GO:0009507] TISSUE SPECIFICITY: Expressed in roots, exclusively in the stele. {ECO:0000269|PubMed:25339971}. locus:2166968; AT5G23240 DNAJ heat shock N-terminal domain-containing protein OSJNBa0018M05.19 protein (Os04g0675400 protein) (cDNA clone:J013134H18, full insert sequence) Q7XQ89 Q7XQ89_ORYSJ Os04g0675400 Os04g0675400 OsJ_16608 OSJNBa0018M05.19 OSNPB_040675400 ENOG411EKDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early transcription elongation factor of RNA pol II NGN section NA NA NA NA NA NA NA ENOG411EKDJ HULK3,HULK2,HUA2 LIKE 2 F4IZM8,F4IN78,A0A1P8B1R0 HUAL3_ARATH,HUAL2_ARATH,A0A1P8B1R0_ARATH Protein HUA2-LIKE 3 (HUA2-like protein 3),Protein HUA2-LIKE 2 (HUA2-like protein 2),Tudor/PWWP/MBT domain-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the triple mutant plants hulk1, hulk2 and hulk3 show delayed flowering. {ECO:0000269|PubMed:25070081}. FUNCTION: Probable transcription factor that acts with partial redundancy with HULK1 and HULK2. Plays diverse and essential roles in the control of plant development, physiology and flowering time. {ECO:0000269|PubMed:25070081}.,FUNCTION: Probable transcription factor that acts with partial redundancy with HULK1 and HULK3. Plays diverse and essential roles in the control of plant development, physiology and flowering time. {ECO:0000269|PubMed:25070081}. 149318,149639,152206 Protein HUA2-LIKE 3 (HUA2-like protein 3),Protein HUA2-LIKE 2 (HUA2-like protein 2),Tudor/PWWP/MBT domain-containing protein nucleus [GO:0005634]; flower development [GO:0009908]; mRNA processing [GO:0006397]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed throughout young primordia, and vegetative and reproductive apices. {ECO:0000269|PubMed:25070081}. locus:2099242;,locus:2039351; AT3G63070,AT2G48160 RPR NA NA NA NA NA NA NA ENOG411EKDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Os01g0941800 protein A0A0P0VCS6 A0A0P0VCS6_ORYSJ Os01g0941800 OSNPB_010941800 ENOG411EKDF F4IJE1 F4IJE1_ARATH Phox domain-containing protein 113718 Phox domain-containing protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; phosphatidylinositol binding [GO:0035091] locus:2044546; AT2G15900 Sorting nexin C terminal Os11g0159000 protein Q0IUF9 Q0IUF9_ORYSJ Os11g0159000 OSNPB_110159000 ENOG411EKDG Q93ZE3 Q93ZE3_ARATH Arabinanase/levansucrase/invertase (At1g26760/T24P13_13) 49740 Arabinanase/levansucrase/invertase (At1g26760/T24P13_13) locus:4515102593; AT1G26761 NA NA NA NA NA NA NA NA ENOG411DY6B FAH1,FAH2 O48916,Q9SUC5 FAH1_ARATH,FAH2_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1 (EC 1.14.18.7) (Fatty acid 2-hydroxylase 1) (AtFAH1),Dihydroceramide fatty acyl 2-hydroxylase FAH2 (EC 1.14.18.7) (Fatty acid 2-hydroxylase 2) (AtFAH2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22635113}. FUNCTION: Fatty acid 2-hydroxylase involved in the alpha-hydroxylation of sphingolipid-associated very long-chain fatty acids (VLCFA). Probably involved in the resistance response to oxidative stress. {ECO:0000269|PubMed:22635113, ECO:0000269|PubMed:9353282}.,FUNCTION: Fatty acid 2-hydroxylase involved in the alpha-hydroxylation of the long-chain fatty acid (LCFA) palmitic acid. Probably involved in the resistance response to oxidative stress. {ECO:0000269|PubMed:19054355, ECO:0000269|PubMed:22635113}. ARA:AT2G34770-MONOMER;MetaCyc:AT2G34770-MONOMER;,ARA:AT4G20870-MONOMER; R-ATH-1660661; 1.14.18.7 27422,27311 Dihydroceramide fatty acyl 2-hydroxylase FAH1 (EC 1.14.18.7) (Fatty acid 2-hydroxylase 1) (AtFAH1),Dihydroceramide fatty acyl 2-hydroxylase FAH2 (EC 1.14.18.7) (Fatty acid 2-hydroxylase 2) (AtFAH2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; fatty acid biosynthetic process [GO:0006633]; very long-chain fatty acid metabolic process [GO:0000038],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; fatty acid biosynthetic process [GO:0006633]; fatty acid metabolic process [GO:0006631] TISSUE SPECIFICITY: Expressed in leaves, roots, flowers and seeds. {ECO:0000269|PubMed:22918503}. locus:2061564;,locus:2133054; AT2G34770,AT4G20870 fatty acid Fatty acid hydroxylase family protein, expressed (Os03g0780800 protein) (Putative fatty acid hydroxylase) (cDNA clone:006-207-F06, full insert sequence),Os12g0628400 protein Q9AY73,Q0ILR7 Q9AY73_ORYSJ,Q0ILR7_ORYSJ OSJNBa0091J19.15 LOC_Os03g56820 Os03g0780800 OsJ_12811 OSNPB_030780800,Os12g0628400 Os12g0628400 OSNPB_120628400 ENOG411DY6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain Os07g0137900 protein (Fragment) Q0D8Q3,A0A0P0X2K2 Q0D8Q3_ORYSJ,A0A0P0X2K2_ORYSJ Os07g0137900 Os07g0137900 OSNPB_070137900,Os07g0137900 OSNPB_070137900 ENOG411DY6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin C-terminal domain NA NA NA NA NA NA NA ENOG411DY6J Q9SRZ7,A0A1P8AMH6 Q9SRZ7_ARATH,A0A1P8AMH6_ARATH F12P19.9 protein (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein),Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein 111113,105902 F12P19.9 protein (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein),Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein plasma membrane [GO:0005886]; vacuole [GO:0005773]; metal ion binding [GO:0046872],metal ion binding [GO:0046872] locus:2009739; AT1G65920 FYVE Os02g0684900 protein (Fragment),Os04g0583700 protein Q0DYL0,A0A0P0WDY2 Q0DYL0_ORYSJ,A0A0P0WDY2_ORYSJ Os02g0684900 Os02g0684900 OSNPB_020684900,Os04g0583700 OSNPB_040583700 ENOG411DY6I CCMB P93280 CCMB_ARATH Putative cytochrome c biogenesis ccmB-like mitochondrial protein (ABC transporter I family member 2) (ABC transporter ABCI.2) (AtABCI2) FUNCTION: May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. 23635 Putative cytochrome c biogenesis ccmB-like mitochondrial protein (ABC transporter I family member 2) (ABC transporter ABCI.2) (AtABCI2) ATP-binding cassette (ABC) transporter complex [GO:0043190]; mitochondrial membrane [GO:0031966]; heme transporter activity [GO:0015232]; cytochrome complex assembly [GO:0017004] ATMG00110 cytochrome C biogenesis Cytochrome c biogenesis B Q8HCM3 Q8HCM3_ORYSJ ccmB ENOG411DY6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411DY6N Q8RWW9,Q9C824,B3H4W5,F4ICW0 Q8RWW9_ARATH,Q9C824_ARATH,B3H4W5_ARATH,F4ICW0_ARATH DNA ligase (DUF630 and DUF632) (Uncharacterized protein At5g25590),BZIP protein, putative; 48652-45869 (Kinesin-like protein),Kinesin-like protein 88366,90455,54951,87821 DNA ligase (DUF630 and DUF632) (Uncharacterized protein At5g25590),BZIP protein, putative; 48652-45869 (Kinesin-like protein),Kinesin-like protein ligase activity [GO:0016874],plasma membrane [GO:0005886] locus:2179504;,locus:2018174; AT5G25590,AT1G52320 Protein of unknown function (DUF632) Os05g0394200 protein,Os07g0211900 protein (Putative bZIP protein),Os01g0500500 protein B9FPG3,Q8H4U8,A0A0P0V2Y7 B9FPG3_ORYSJ,Q8H4U8_ORYSJ,A0A0P0V2Y7_ORYSJ Os05g0394200 OsJ_18443 OSNPB_050394200,OJ1664_D08.104 Os07g0211900 OSJNBb0042J07.11 OSNPB_070211900,Os01g0500500 OSNPB_010500500 ENOG411DY6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DY6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Cell division cycle gene CDC48-like (Os01g0623500 protein) Q9AX97 Q9AX97_ORYSJ Os01g0623500 Os01g0623500 OsJ_02657 OSNPB_010623500 P0501G01.25 ENOG411DY6R MPO12.2 F4IN68,Q9ZU79,Q9FNE7,B3LFC1,A0A1P8BBT6 F4IN68_ARATH,Q9ZU79_ARATH,Q9FNE7_ARATH,B3LFC1_ARATH,A0A1P8BBT6_ARATH Exonuclease family protein,Exonuclease family protein (Expressed protein) (Putative exonuclease),Exonuclease family protein (Exonuclease-like protein),At3g27970 (Exonuclease family protein) (Uncharacterized protein At3g27970) 27255,39121,40105,41025,41210 Exonuclease family protein,Exonuclease family protein (Expressed protein) (Putative exonuclease),Exonuclease family protein (Exonuclease-like protein),At3g27970 (Exonuclease family protein) (Uncharacterized protein At3g27970) exonuclease activity [GO:0004527]; nucleic acid binding [GO:0003676] locus:2066406;,locus:2170533;,locus:2086839; AT2G48100,AT5G40310,AT3G27970 exonuclease Os02g0709000 protein A0A0P0VNJ1 A0A0P0VNJ1_ORYSJ Os02g0709000 OSNPB_020709000 ENOG411DY6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os02g0720600 protein (Putative 41 kD chloroplast nucleoid DNA binding protein (CND41)) (cDNA clone:001-205-G11, full insert sequence),Os01g0608300 protein (Fragment) Q6Z674,A0A0P0V526 Q6Z674_ORYSJ,A0A0P0V526_ORYSJ Os02g0720600 Os02g0720600 OJ1008_D06.19 OsJ_08176 OSNPB_020720600 P0654B04.4,Os01g0608300 OSNPB_010608300 ENOG411DY6V GPX8 Q8LBU2 GPX8_ARATH Probable glutathione peroxidase 8 (EC 1.11.1.9) FUNCTION: May constitute a glutathione peroxidase-like protective system against oxidative stresses. {ECO:0000250}. ARA:AT1G63460-MONOMER; R-ATH-2142712; 1.11.1.9 19068 Probable glutathione peroxidase 8 (EC 1.11.1.9) cytosol [GO:0005829]; nucleus [GO:0005634]; glutathione peroxidase activity [GO:0004602]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] locus:2031331; AT1G63460 glutathione peroxidase NA NA NA NA NA NA NA ENOG411DY6U Q9SH55,F4I591 Q9SH55_ARATH,F4I591_ARATH F22C12.19,Uncharacterized protein 72902,72774 F22C12.19,Uncharacterized protein locus:2024613; AT1G64050 NA Os02g0265700 protein,Os02g0265700 protein (Fragment) A0A0P0VHC6,A0A0P0VHB9 A0A0P0VHC6_ORYSJ,A0A0P0VHB9_ORYSJ Os02g0265700 OSNPB_020265700 ENOG411DY6Z Q9FZD4 PPR59_ARATH Putative pentatricopeptide repeat-containing protein At1g26500 58905 Putative pentatricopeptide repeat-containing protein At1g26500 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2197925; AT1G26500 Pentatricopeptide repeat-containing protein Os07g0599201 protein A3BLV8 A3BLV8_ORYSJ Os07g0599201 OsJ_25002 OSNPB_070599201 ENOG411DY6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DY6X RH17 Q7XJN0 RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 (EC 3.6.4.13) 3.6.4.13 68214 DEAD-box ATP-dependent RNA helicase 17 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2064844; AT2G40700 ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 17 (OsRH17) (EC 3.6.4.13) Q0DLB9 RH17_ORYSJ RH17 Os05g0110500 LOC_Os05g01990 OsJ_16855 P0016H04.6 FUNCTION: May play a role in organellar ribosome biogenesis and suppress 16S rRNA maturation. {ECO:0000305|PubMed:25447922}. ENOG411DY63 GPP1,GPP2 F4JTE7,Q8VZP1 GPP1_ARATH,GPP2_ARATH (DL)-glycerol-3-phosphatase 1, mitochondrial (EC 3.1.3.21) (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase) (AtGpp1/PyrP3) (EC 3.1.3.104) (5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase) (ARPP phosphatase) (Glycerol-1-phosphatase 1) (AtGPP1) (Haloacid dehalogenase-like hydrolase domain-containing protein GPP1),(DL)-glycerol-3-phosphatase 2 (EC 3.1.3.21) (Glycerol-1-phosphatase 2) (Haloacid dehalogenase-like hydrolase domain-containing protein GPP2) FUNCTION: Acts as a glycerol-3-phosphatase with higher stereospecificity for L-glycerol-3-phosphate than DL-glycerol-3-phosphate (PubMed:17136424). Can also dephosphorylate in vitro 5-amino-6-(5-phospho-D-ribitylamino)uracil, also known as ARPP (PubMed:27490826). {ECO:0000269|PubMed:17136424, ECO:0000269|PubMed:27490826}.,FUNCTION: Acts as a glycerol-3-phosphatase with higher stereospecificity for L-glycerol-3-phosphate than DL-glycerol-3-phosphate. {ECO:0000269|PubMed:17136424}. ARA:AT5G57440-MONOMER; R-ATH-73614; 3.1.3.21; 3.1.3.104,3.1.3.21 33071,26780 (DL)-glycerol-3-phosphatase 1, mitochondrial (EC 3.1.3.21) (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase) (AtGpp1/PyrP3) (EC 3.1.3.104) (5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase) (ARPP phosphatase) (Glycerol-1-phosphatase 1) (AtGPP1) (Haloacid dehalogenase-like hydrolase domain-containing protein GPP1),(DL)-glycerol-3-phosphatase 2 (EC 3.1.3.21) (Glycerol-1-phosphatase 2) (Haloacid dehalogenase-like hydrolase domain-containing protein GPP2) mitochondrion [GO:0005739]; glycerol-1-phosphatase activity [GO:0000121]; glycerol-3-phosphatase activity [GO:0043136]; metal ion binding [GO:0046872]; dephosphorylation [GO:0016311]; glycerol biosynthetic process [GO:0006114]; riboflavin biosynthetic process [GO:0009231],mitochondrion [GO:0005739]; glycerol-1-phosphatase activity [GO:0000121]; glycerol-3-phosphatase activity [GO:0043136]; metal ion binding [GO:0046872]; dephosphorylation [GO:0016311]; glycerol biosynthetic process [GO:0006114] TISSUE SPECIFICITY: Ubiquitous with highest expression in siliques. Mainly restricted to the meristem of immature flower and vascular elements of the root, shoot, leave, siliqua and developing embryo (at the protein level). {ECO:0000269|PubMed:17136424}. locus:2117512;,locus:2174567; AT4G25840,AT5G57440 Haloacid dehalogenase-like hydrolase domain-containing protein Os08g0243600 protein (Putative HAD-superfamily hydrolase) (cDNA clone:J033039F04, full insert sequence) Q7XXR4 Q7XXR4_ORYSJ Os08g0243600 OSJNBb0070J06.26 OSNPB_080243600 P0437G01.11 ENOG411DY62 Q147M4 Q147M4_ARATH At5g26610 (D111/G-patch domain-containing protein) (Uncharacterized protein At5g26610) 34814 At5g26610 (D111/G-patch domain-containing protein) (Uncharacterized protein At5g26610) nucleic acid binding [GO:0003676] locus:2146839; AT5G26610 domain-containing protein Os05g0229000 protein (Os05g0229475 protein),Os04g0115400 protein,Os04g0114801 protein (Fragment) Q6AT05,Q0JFD2,A0A0P0W608 Q6AT05_ORYSJ,Q0JFD2_ORYSJ,A0A0P0W608_ORYSJ Os05g0229475 Os05g0229000 B1402B06.4 OsJ_17619 OSNPB_050229475,Os04g0115400 Os04g0115400 OSNPB_040115400,Os04g0114801 OSNPB_040114801 ENOG411DY61 A0A1P8BGL5,Q84MA4,A0A1P8BGM0,A0A1P8BGL9,A0A1P8BGL6,A0A1P8BGL7 A0A1P8BGL5_ARATH,Q84MA4_ARATH,A0A1P8BGM0_ARATH,A0A1P8BGL9_ARATH,A0A1P8BGL6_ARATH,A0A1P8BGL7_ARATH Forkhead-associated domain-containing protein / FHA domain-containing protein,At5g07400 (Forkhead-associated domain-containing protein / FHA domain-containing protein) (Uncharacterized protein At5g07400) 98801,121377,95727,120110,105130,94460 Forkhead-associated domain-containing protein / FHA domain-containing protein,At5g07400 (Forkhead-associated domain-containing protein / FHA domain-containing protein) (Uncharacterized protein At5g07400) nucleus [GO:0005634]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; nucleic acid binding [GO:0003676]; phosphoric diester hydrolase activity [GO:0008081]; zinc ion binding [GO:0008270]; DNA repair [GO:0006281] locus:2183319; AT5G07400 Tyrosyl-DNA phosphodiesterase Os04g0403400 protein Q0JDH5 Q0JDH5_ORYSJ Os04g0403400 Os04g0403400 OSNPB_040403400 ENOG411DY60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor DNA binding protein-like (Os01g0218100 protein) Q9FTQ1 Q9FTQ1_ORYSJ Os01g0218100 OSNPB_010218100 P0489G09.6 P0665D10.21 ENOG411DY67 Q6R0D2,A0A1P8AVB1,Q8GZ96,A0A1P8AQS0,F4I129 Q6R0D2_ARATH,A0A1P8AVB1_ARATH,Q8GZ96_ARATH,A0A1P8AQS0_ARATH,F4I129_ARATH Homeodomain-like superfamily protein (MYB transcription factor),Homeodomain-like superfamily protein,At1g58220 (Homeodomain-like superfamily protein) (MYB transcription factor) (Putative MYB-family transcription factor) 64693,61375,86282,79462,69138 Homeodomain-like superfamily protein (MYB transcription factor),Homeodomain-like superfamily protein,At1g58220 (Homeodomain-like superfamily protein) (MYB transcription factor) (Putative MYB-family transcription factor) DNA binding [GO:0003677],nuclear chromosome, telomeric region [GO:0000784]; double-stranded telomeric DNA binding [GO:0003691]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; telomeric loop formation [GO:0031627],nuclear chromosome, telomeric region [GO:0000784]; double-stranded telomeric DNA binding [GO:0003691]; telomeric loop formation [GO:0031627] locus:2015307;,locus:2024266; AT1G09710,AT1G58220 SANT Myb-family transcription factor-like protein (Os02g0551400 protein) Q6ZI39 Q6ZI39_ORYSJ Os02g0551400 OJ1004_H01.10 OSNPB_020551400 ENOG411DY66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DY65 NUP93A,NUP93B O22224,F4J284 NP93A_ARATH,NU93B_ARATH Nuclear pore complex protein NUP93A (Nucleoporin 93A),Nuclear pore complex protein NUP93B (Nucleoporin 93B) 96615,96418 Nuclear pore complex protein NUP93A (Nucleoporin 93A),Nuclear pore complex protein NUP93B (Nucleoporin 93B) nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; structural constituent of nuclear pore [GO:0017056]; nuclear pore complex assembly [GO:0051292]; poly(A)+ mRNA export from nucleus [GO:0016973]; protein import into nucleus [GO:0006606],nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; structural constituent of nuclear pore [GO:0017056]; nuclear pore complex assembly [GO:0051292]; poly(A)+ mRNA export from nucleus [GO:0016973]; protein import into nucleus [GO:0006606] locus:2062693;,locus:2082548; AT2G41620,AT3G57350 nucleoporin interacting component Nuclear pore protein Q10LH9 Q10LH9_ORYSJ Os03g0349000 LOC_Os03g22690 Os03g0349000 OsJ_10833 OSNPB_030349000 ENOG411DY64 SEOB Q9SS87 SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B (AtSEOb) (Protein SIEVE ELEMENT OCCLUSION-RELATED 1) (AtSEOR1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22470058}. FUNCTION: Scaffold protein required to form the phloem filament matrix in sieve elements. {ECO:0000269|PubMed:22470058}. 85270 Protein SIEVE ELEMENT OCCLUSION B (AtSEOb) (Protein SIEVE ELEMENT OCCLUSION-RELATED 1) (AtSEOR1) protein homodimerization activity [GO:0042803]; protein self-association [GO:0043621]; phloem development [GO:0010088] TISSUE SPECIFICITY: Expressed in phloem sieve elements. {ECO:0000269|PubMed:22198148}. locus:2084158; AT3G01680 Mediator complex subunit 28 NA NA NA NA NA NA NA ENOG411DY69 NAC071 O49697 NAC71_ARATH NAC domain-containing protein 71 (ANAC071) FUNCTION: Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. 30122 NAC domain-containing protein 71 (ANAC071) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell proliferation [GO:0008283]; cellular response to auxin stimulus [GO:0071365]; transcription, DNA-templated [GO:0006351] locus:2141075; AT4G17980 NAC domain containing protein Os10g0571600 protein (Fragment) Q0IVH2 Q0IVH2_ORYSJ Os10g0571600 Os10g0571600 OSNPB_100571600 ENOG411DY68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EE6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os07g0195300 protein,Os07g0198000 protein Q6ZKZ1,Q6Z390 Q6ZKZ1_ORYSJ,Q6Z390_ORYSJ OJ1715_A07.17 Os07g0195300 OSNPB_070195300,Os07g0198000 OSNPB_070198000 P0417F02.15 P0589E08.34 ENOG411DTPI KEA3 Q9M0Z3 KEA3_ARATH K(+) efflux antiporter 3, chloroplastic (AtKEA3) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:25451040, PubMed:24794527). Kea1, kea2 and kea3 triple mutants are extremely stunted in size with entirely pale leaves and died before steeing seeds (PubMed:24794527). {ECO:0000269|PubMed:24794527, ECO:0000269|PubMed:25451040}. FUNCTION: Electroneutral K(+)/H(+) antiporter. Accelerates photosynthetic acclimation in fluctuating light environments. {ECO:0000269|PubMed:25451040}. 83791 K(+) efflux antiporter 3, chloroplastic (AtKEA3) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; inorganic cation transmembrane transporter activity [GO:0022890]; solute:proton antiporter activity [GO:0015299]; photosynthetic acclimation [GO:0009643]; positive regulation of photosynthesis [GO:1905157]; potassium ion transport [GO:0006813] TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:24278440}. locus:2138942; AT4G04850 efflux antiporter Os12g0617800 protein (Potassium transporter, putative, expressed) (cDNA clone:J013166D16, full insert sequence) Q2QM48 Q2QM48_ORYSJ LOC_Os12g42300 Os12g0617800 OSNPB_120617800 ENOG411DTPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os05g0393900 protein C7J343 C7J343_ORYSJ Os05g0393900 Os05g0393900 OSNPB_050393900 ENOG411DTPK A0A1P8BBZ7,Q93ZV0,Q9M8J7,A0A1I9LLM7 A0A1P8BBZ7_ARATH,Q93ZV0_ARATH,Q9M8J7_ARATH,A0A1I9LLM7_ARATH ARM repeat superfamily protein,ARM repeat superfamily protein (Uncharacterized protein At5g18980),ARM repeat superfamily protein (F28L1.15 protein) 75372,93773,94475,80362 ARM repeat superfamily protein,ARM repeat superfamily protein (Uncharacterized protein At5g18980),ARM repeat superfamily protein (F28L1.15 protein) integral component of membrane [GO:0016021] locus:2179649;,locus:2082470; AT5G18980,AT3G06210 expressed protein Expressed protein (Os03g0362200 protein),Expressed protein (Os03g0363100 protein),BLE2 protein-like protein (Os07g0648000 protein),Expressed protein (Os12g0528100 protein),Os03g0145400 protein Q10L20,Q10L11,Q8LIE4,Q2QPI5,A0A0P0VT01 Q10L20_ORYSJ,Q10L11_ORYSJ,Q8LIE4_ORYSJ,Q2QPI5_ORYSJ,A0A0P0VT01_ORYSJ Os03g0362200 LOC_Os03g24730 Os03g0362200 OsJ_10936 OSNPB_030362200,Os03g0363100 LOC_Os03g24820 Os03g0363100 OSNPB_030363100,OJ1316_A04.120 P0427D10.103 Os07g0648000 OSNPB_070648000,LOC_Os12g34360 Os12g0528100 OsJ_36323 OSNPB_120528100,Os03g0145400 OSNPB_030145400 ENOG411DTPD Q9LZZ7 SKA1_ARATH Spindle and kinetochore-associated protein 1 homolog 30399 Spindle and kinetochore-associated protein 1 homolog microtubule binding [GO:0008017]; cell division [GO:0051301]; chromosome segregation [GO:0007059] locus:2101851; AT3G60660 Spindle and kinetochore-associated protein 1 homolog Spindle and kinetochore-associated protein 1 homolog Q7XAM0 SKA1_ORYSJ Os07g0484500 LOC_Os07g30110 OJ1136_F08.123 OJ1753_E03.102 OsJ_24262 ENOG411DTPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0288200 protein (Putative Neurofilament triplet M protein),Os02g0288200 protein (Fragment) Q6K8A9,A0A0P0VHQ5 Q6K8A9_ORYSJ,A0A0P0VHQ5_ORYSJ Os02g0288200 OJ1756_H07.29 OSNPB_020288200,Os02g0288200 OSNPB_020288200 ENOG411DTPF LTA3 Q0WQF7,F4J5T2 ODP21_ARATH,F4J5T2_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 1 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 1) (PDC-E2 1) (PDCE2 1),Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.-) FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). {ECO:0000269|PubMed:14764908}. ARA:AT3G52200-MONOMER; R-ATH-204174;R-ATH-5362517;R-ATH-70268; 2.3.1.12,2.3.1.- 68862,77894 Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial (EC 2.3.1.12) (Dihydrolipoamide S-acetyltransferase component 1 of pyruvate dehydrogenase complex) (Pyruvate dehydrogenase complex component E2 1) (PDC-E2 1) (PDCE2 1),Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.-) mitochondrial matrix [GO:0005759]; pyruvate dehydrogenase complex [GO:0045254]; dihydrolipoyllysine-residue acetyltransferase activity [GO:0004742]; glycolytic process [GO:0006096],mitochondrion [GO:0005739]; ATP binding [GO:0005524]; transferase activity, transferring acyl groups [GO:0016746]; metabolic process [GO:0008152] locus:2083745; AT3G52200 dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex Acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) Q654L9 Q654L9_ORYSJ Os06g0499900 Os06g0499900 OSNPB_060499900 P0012H03.4 P0596H06.24 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). {ECO:0000256|RuleBase:RU361137}. ENOG411DTPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os08g0171100 protein (Fragment),Os08g0171216 protein Q0J7Q5,A0A0P0XCC2 Q0J7Q5_ORYSJ,A0A0P0XCC2_ORYSJ Os08g0171100 Os08g0171100 OSNPB_080171100,Os08g0171216 OSNPB_080171216 ENOG411DTPY TPS21 Q84UU4 HUMS_ARATH Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (EC 4.2.3.-) (Terpenoid synthase 21) (AtTPS21) DISRUPTION PHENOTYPE: Does not emit (E)-beta-caryophyllene, alpha-copaene and alpha-humulene. {ECO:0000269|PubMed:15918888}. FUNCTION: Involved in sesquiterpene (C15) biosynthesis. The major products are beta-caryophyllene and alpha-humulene. Does not convert geranyl diphosphate (GPP) to any monoterpenes. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:15918888}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT5G23960-MONOMER;MetaCyc:AT5G23960-MONOMER; 4.2.3.- 63619 Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (EC 4.2.3.-) (Terpenoid synthase 21) (AtTPS21) cytoplasm [GO:0005737]; (-)-E-beta-caryophyllene synthase activity [GO:0080016]; alpha-humulene synthase activity [GO:0080017]; magnesium ion binding [GO:0000287]; response to herbivore [GO:0080027]; sesquiterpene biosynthetic process [GO:0051762]; sesquiterpenoid biosynthetic process [GO:0016106] TISSUE SPECIFICITY: Expressed exclusively in flowers. Expressed in the flower stigmata and also detected in the mesocarp cell layers of the silique wall. {ECO:0000269|PubMed:12566586, ECO:0000269|PubMed:12805595, ECO:0000269|PubMed:15918888}. locus:2178657; AT5G23960 synthase Os03g0428200 protein (Terpene synthase, N-terminal domain containing protein, expressed),Os02g0458100 protein (Fragment),Os08g0139700 protein (Fragment) Q10JA2,A0A0P0VIP3,A0A0P0XBL8 Q10JA2_ORYSJ,A0A0P0VIP3_ORYSJ,A0A0P0XBL8_ORYSJ Os03g0428200 LOC_Os03g31430 OSNPB_030428200,Os02g0458100 OSNPB_020458100,Os08g0139700 OSNPB_080139700 ENOG411DTPT Q500V5,Q9C8Z3 Q500V5_ARATH,Q9C8Z3_ARATH Agenet domain-containing protein (At1g09320),Agenet domain-containing protein (Uncharacterized protein F5E6.15) 59713,54216 Agenet domain-containing protein (At1g09320),Agenet domain-containing protein (Uncharacterized protein F5E6.15) locus:2203018;,locus:2084309; AT1G09320,AT3G06520 agenet domain-containing protein Os05g0132400 protein (Fragment) A0A0P0WHJ5 A0A0P0WHJ5_ORYSJ Os05g0132400 OSNPB_050132400 ENOG411DTPU AGD5 Q9FL69 AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 (ARF GAP AGD5) (Protein ARF-GAP DOMAIN 5) (AtAGD5) (Protein ZIGA3) floral organ shedding abnormal (differences in abscission zone morphology were first detected when organ separation normally occurs in wild-type flowers (stage 16). At this point abscission zone cells expand and become vacuolated in wild type (Fig. 1F) whereas in mutant flowers the organs stay attached and cells within the sepal and petal abscission zones remain small and densely cytoplasmic); Golgi apparatus abnormal (in mutant plants cells in the region of sepal abscission zone predominately exhibited circularized or cup-shaped multilamellar structures rather than the flat stacks of Golgi cisternae typical of wild type); tubular-vesicular networks abnormal; paramural bodies present in greater numbers in organisms (flowers fruit walls and pedicels of mutant flowers). Indehiscent floral organs; Abnormal silique morphology-J. Ecker-2009 FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). {ECO:0000250}. 52593 Probable ADP-ribosylation factor GTPase-activating protein AGD5 (ARF GAP AGD5) (Protein ARF-GAP DOMAIN 5) (AtAGD5) (Protein ZIGA3) cytosol [GO:0005829]; endosome [GO:0005768]; trans-Golgi network [GO:0005802]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; activation of GTPase activity [GO:0090630]; floral organ abscission [GO:0010227] locus:2162580; AT5G54310 ADP-ribosylation factor GTPase-activating protein ARF GAP-like zinc finger-containing protein-like (GAP-like zinc-finger containing protein) (Os07g0563800 protein) (cDNA clone:J013098J09, full insert sequence),Os07g0563800 protein (Fragment) Q69QY4,A0A0P0X7J8,A0A0P0X806 Q69QY4_ORYSJ,A0A0P0X7J8_ORYSJ,A0A0P0X806_ORYSJ OJ1720_F04.113 Os07g0563800 OsJ_24751 OSNPB_070563800,Os07g0563800 OSNPB_070563800 ENOG411DTPV PRMT6 Q08A71,A0A178VA69 ANM6_ARATH,A0A178VA69_ARATH Probable protein arginine N-methyltransferase 6 (EC 2.1.1.-),Protein arginine methyltransferase 6 FUNCTION: Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). {ECO:0000250}. R-ATH-3214858; 2.1.1.- 48271,49372 Probable protein arginine N-methyltransferase 6 (EC 2.1.1.-),Protein arginine methyltransferase 6 cytosol [GO:0005829]; histone-arginine N-methyltransferase activity [GO:0008469]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; regulation of transcription, DNA-templated [GO:0006355],methyltransferase activity [GO:0008168]; protein methylation [GO:0006479] locus:2087540; AT3G20020 Protein arginine n-methyltransferase Probable protein arginine N-methyltransferase 6.1 (EC 2.1.1.-),Probable protein arginine N-methyltransferase 6.2 (EC 2.1.1.-),Os04g0677066 protein Q7XKC0,Q75G68,A0A0P0WGE0 ANM61_ORYSJ,ANM62_ORYSJ,A0A0P0WGE0_ORYSJ PRMT6.1 Os04g0677066 LOC_Os04g58060 OsJ_015894 OSJNBa0064G10.11,PRMT6.2 Os10g0489100 LOC_Os10g34740 B1288B10.2 OsJ_030708,Os04g0677066 OSNPB_040677066 FUNCTION: Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). {ECO:0000250}. ENOG411DTPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os01g0234700 protein (cDNA clone:002-153-B02, full insert sequence) Q5NAW6 Q5NAW6_ORYSJ Os01g0234700 Os01g0234700 OSNPB_010234700 P0702F03.23 ENOG411DTPR CCDA,CcdA Q9M5P3,F4K0A8 CCDA_ARATH,F4K0A8_ARATH Cytochrome c-type biogenesis ccda-like chloroplastic protein (Cytochrome b6f biogenesis protein CCDA),Cytochrome c biogenesis protein family DISRUPTION PHENOTYPE: High chlorophyll fluorescence and deficiency in the accumulation of the cytochrome b6f complex subunits. Dwarf due to very slow growth and pale green leaves. {ECO:0000269|PubMed:15159384}. FUNCTION: Required for the transfer of reducing equivalents from stroma to thylakoid lumen. Involved in the biogenesis of the plastid cytochrome b6f complex by probably transferring reducing equivalents from stromal m-type thioredoxin (Trx-m) to the lumenal thioredoxin HCF164. {ECO:0000269|PubMed:15159384, ECO:0000269|PubMed:20214498}. 36530,36587 Cytochrome c-type biogenesis ccda-like chloroplastic protein (Cytochrome b6f biogenesis protein CCDA),Cytochrome c biogenesis protein family chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastid thylakoid membrane [GO:0055035]; cytochrome b6f complex assembly [GO:0010190]; oxidation-reduction process [GO:0055114],chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021]; cell redox homeostasis [GO:0045454]; cytochrome complex assembly [GO:0017004]; oxidation-reduction process [GO:0055114] locus:2162560; AT5G54290 cytochrome c-type biogenesis ccda-like chloroplastic protein Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 (Cytochrome b6f biogenesis protein CCDA1),Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (Cytochrome b6f biogenesis protein CCDA2),Os12g0137300 protein (Fragment) Q2RAR6,Q2QY07,A0A0P0Y6N5 CCDA1_ORYSJ,CCDA2_ORYSJ,A0A0P0Y6N5_ORYSJ CCDA1 Os11g0140800 LOC_Os11g04500 OsJ_32910,CCDA2 Os12g0137300 LOC_Os12g04270,Os12g0137300 OSNPB_120137300 FUNCTION: Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex. {ECO:0000250}. ENOG411DTP8 Q8VZ23 Q8VZ23_ARATH NAD(P)-linked oxidoreductase superfamily protein (Uncharacterized protein At1g04420) R-ATH-5423646; 46427 NAD(P)-linked oxidoreductase superfamily protein (Uncharacterized protein At1g04420) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570] locus:2018239; AT1G04420 Aldo keto reductase family protein Os03g0611200 protein (Oxidoreductase, aldo/keto reductase family protein, expressed) (Putative aldo/keto reductase family protein) Q75H72 Q75H72_ORYSJ OSJNBb0007E22.16 LOC_Os03g41510 Os03g0611200 OSNPB_030611200 ENOG411DTP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA subtilisin-like protease NA NA NA NA NA NA NA ENOG411DTP4 CIPK6 O65554 CIPK6_ARATH CBL-interacting serine/threonine-protein kinase 6 (EC 2.7.11.1) (SNF1-related kinase 3.14) (SOS2-like protein kinase PKS4) (SOS3-interacting protein 3) DISRUPTION PHENOTYPE: Delayed development and flowering. {ECO:0000269|PubMed:21445098}. atcipk6kd exhibited cotyledons fused at the base and thick hypocotyls. Slight reduction in root length was observed in atcipk6kd seedlings 14 days after sowing. Delayed emergence of lateral roots. Decrease in shoot to root auxin transport at the apex and at the hypocotyl–root junction. Greater sensitivity to salt stress. Decreased expression of genes involved in polar auxin transport and abiotic and biotic stress Fused cotyledons; Thick hypocotyl; Slightly shorter primary root; Few, short lateral roots; Sensitive to salt stress-D. Chattopadhyay-2009 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Downstream of CBL1, CBL2, CBL3 and CBL9, regulates by phosphorylation the K(+) conductance and uptake of AKT1. Binds to CBL4 to modulate AKT2 activity by promoting a kinase interaction-dependent but phosphorylation-independent translocation of the channel to the plasma membrane. {ECO:0000269|PubMed:17898163, ECO:0000269|PubMed:21445098}. 2.7.11.1 49357 CBL-interacting serine/threonine-protein kinase 6 (EC 2.7.11.1) (SNF1-related kinase 3.14) (SOS2-like protein kinase PKS4) (SOS3-interacting protein 3) endoplasmic reticulum [GO:0005783]; intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; basipetal auxin transport [GO:0010540]; hyperosmotic salinity response [GO:0042538]; intracellular signal transduction [GO:0035556]; multicellular organism development [GO:0007275]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:11402167}. locus:2126749; AT4G30960 Cbl-interacting protein kinase CBL-interacting protein kinase 6 (EC 2.7.11.1) (OsCIPK06),Putative CBL-interacting protein kinase 27 (EC 2.7.11.1) (OsCIPK27),Os06g0621100 protein,Os05g0454800 protein (Fragment),Os04g0163425 protein (Fragment),Non-specific serine/threonine protein kinase (EC 2.7.11.1) (Fragment),Os03g0604401 protein,Os06g0570650 protein (Fragment),Os11g0154700 protein (Fragment) Q6Z9F4,Q6ERS0,B9FPY7,A0A0P0WNG0,A0A0N7KIK3,A0A0N7KQT4,A0A0N7KHM3,A0A0P0XGP1,A0A0P0WXW5,A0A0P0XYW4 CIPK6_ORYSJ,CIPKR_ORYSJ,B9FPY7_ORYSJ,A0A0P0WNG0_ORYSJ,A0A0N7KIK3_ORYSJ,A0A0N7KQT4_ORYSJ,A0A0N7KHM3_ORYSJ,A0A0P0XGP1_ORYSJ,A0A0P0WXW5_ORYSJ,A0A0P0XYW4_ORYSJ CIPK6 Os08g0441100 LOC_Os08g34240 P0524F03.52 P0528B09.25,CIPK27 Os09g0418500 LOC_Os09g25100 P0701F11.10,Os06g0621100 OsJ_22000 OSNPB_060621100,Os05g0454800 OSNPB_050454800,Os04g0163425 OSNPB_040163425,Os09g0418500 OSNPB_090418500,Os03g0604401 OSNPB_030604401,Os08g0441100 OSNPB_080441100,Os06g0570650 OSNPB_060570650,Os11g0154700 OSNPB_110154700 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DTP5 F4JH58 F4JH58_ARATH Insulin-induced protein 28788 Insulin-induced protein integral component of membrane [GO:0016021] locus:504955233; AT4G01935 NA Os01g0252600 protein A0A0P0V0P2 A0A0P0V0P2_ORYSJ Os01g0252600 OSNPB_010252600 ENOG411DTP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0497600 protein Q0J0J3 Q0J0J3_ORYSJ Os09g0497600 OSNPB_090497600 ENOG411DTP7 MTI20.21 Q8LAJ4,A0A1P8BA81 Q8LAJ4_ARATH,A0A1P8BA81_ARATH 26S proteasome regulatory subunit (26S proteasome regulatory subunit p27, putative) (At5g57950) (Uncharacterized protein At5g57950/MTI20_21),26S proteasome regulatory subunit R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 24262,27928 26S proteasome regulatory subunit (26S proteasome regulatory subunit p27, putative) (At5g57950) (Uncharacterized protein At5g57950/MTI20_21),26S proteasome regulatory subunit cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome regulatory particle, base subcomplex [GO:0008540]; proteasome regulatory particle assembly [GO:0070682],proteasome complex [GO:0000502]; proteasome regulatory particle assembly [GO:0070682] locus:2174453; AT5G57950 26S proteasome non-atpase regulatory subunit 26S proteasome regulatory subunit-like protein (Os09g0420600 protein) Q69Q88 Q69Q88_ORYSJ Os09g0420600 OSNPB_090420600 P0668D04.30 ENOG411DTP1 KIN14F,KP1 Q8W1Y3,A0A1I9LSV1 KN14F_ARATH,A0A1I9LSV1_ARATH Kinesin-like protein KIN-14F (AtKIN14h) (Kinesin KP1) (Kinesin-like protein 1) (AtKP1),Kinesin-like protein 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21406623}. FUNCTION: Required for keeping the ATP levels stable and balancing the aerobic respiration pathways during seed germination at low temperature. {ECO:0000269|PubMed:21406623}. ARA:GQT-338-MONOMER; 121149,126283 Kinesin-like protein KIN-14F (AtKIN14h) (Kinesin KP1) (Kinesin-like protein 1) (AtKP1),Kinesin-like protein 1 kinesin complex [GO:0005871]; microtubule [GO:0005874]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; aerobic respiration [GO:0009060]; microtubule-based movement [GO:0007018]; seed germination [GO:0009845],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (at protein level). {ECO:0000269|PubMed:16212879}. locus:2101645; AT3G44730 K10406 kinesin family member C2 C3 Os04g0467901 protein A0A0P0WBQ2 A0A0P0WBQ2_ORYSJ Os04g0467901 OSNPB_040467901 ENOG411DTP2 GFT1 Q84L08 GFT1_ARATH GDP-fucose transporter 1 (GDP-mannose transporter GONST4) (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 4) FUNCTION: Acts as the major nucleotide-sugar transporter for the import of GDP-Fucose into the Golgi lumen. Transports GDP-Fucose in a strict counter-exchange mode. Is required for proper plant growth and development (PubMed:27381418). Acts also as a GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen (PubMed:15480787). {ECO:0000269|PubMed:15480787, ECO:0000269|PubMed:27381418}. MISCELLANEOUS: RNAi plants display dwarfed phenotype with severe developmental growth defects. Cell wall composition of the RNAi plants shows a considerable reduction of the fucose content. GFT1 down-regulation has also an impact on the levels of protein fucosylation. {ECO:0000269|PubMed:27381418}. 37386 GDP-fucose transporter 1 (GDP-mannose transporter GONST4) (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 4) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; GDP-fucose transmembrane transporter activity [GO:0005457]; carbohydrate transport [GO:0008643]; nucleotide-sugar transport [GO:0015780] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15480787, ECO:0000269|PubMed:27381418}. locus:2147655; AT5G19980 Inherit from KOG: Solute carrier family 35 Os08g0203900 protein (Putative integral membrane protein) (cDNA clone:J033050E20, full insert sequence),Integral membrane protein-like (Os09g0314333 protein) Q6ZCE6,Q69M22 Q6ZCE6_ORYSJ,Q69M22_ORYSJ Os08g0203900 Os08g0203900 OJ1014_H11.22 OSNPB_080203900 P0486F07.4,Os09g0314333 Os09g0314333 OSJNBb0079G12.18 OSNPB_090314333 ENOG411E4ID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0127900 protein (Fragment) A0A0P0VE88 A0A0P0VE88_ORYSJ Os02g0127900 OSNPB_020127900 ENOG411E4IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADP-ribosylation factor GTPase-activating protein Os07g0108400 protein (Fragment) A0A0P0X235 A0A0P0X235_ORYSJ Os07g0108400 OSNPB_070108400 ENOG411E4IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CUE domain Os06g0705500 protein (cDNA clone:006-309-H01, full insert sequence) Q5Z8U9 Q5Z8U9_ORYSJ Os06g0705500 OsJ_22571 OSNPB_060705500 P0018H04.14 P0621D05.2 ENOG411E4IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0473966 protein (Fragment) A0A0P0XNX3 A0A0P0XNX3_ORYSJ Os09g0473966 OSNPB_090473966 ENOG411E4IM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand EF hand family protein, expressed (Os03g0769500 protein) (Putative calcium binding protein) (Putative calmodulin-related protein) (cDNA clone:002-129-E01, full insert sequence) Q75KA8 Q75KA8_ORYSJ OSJNBb0106M04.8 LOC_Os03g55960 Os03g0769500 OSJNBa0072F13.18 OSNPB_030769500 ENOG411E4IH Q9FN32 YIPL7_ARATH Protein yippee-like At5g53940 R-ATH-6798695; 14808 Protein yippee-like At5g53940 metal ion binding [GO:0046872] locus:2154674; AT5G53940 protein yippee-like At5g53940-like NA NA NA NA NA NA NA ENOG411E4IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q2R0I1 Q2R0I1_ORYSJ Os11g0644700 LOC_Os11g42500 Os11g0644750 OsJ_34593 OSNPB_110644700 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E4IT Q8GUJ9 Q8GUJ9_ARATH At5g19590 (Uncharacterized protein At5g19590) 16595 At5g19590 (Uncharacterized protein At5g19590) locus:2183134; AT5G19590 Protein of unknown function DUF538 Os01g0595400 protein (cDNA clone:J023010O20, full insert sequence) Q8L4C8 Q8L4C8_ORYSJ Os01g0595400 B1103C09.17 OSNPB_010595400 P0451D05.30 ENOG411E4IU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os07g0234700 protein,Os08g0271800 protein,Os07g0234900 protein,Os04g0423050 protein,Os04g0422800 protein,Os07g0233500 protein Q8GRW9,A0A0P0XDY3,A0A0P0X441,A0A0P0WA48,A0A0P0WA44,A0A0P0X403 Q8GRW9_ORYSJ,A0A0P0XDY3_ORYSJ,A0A0P0X441_ORYSJ,A0A0P0WA48_ORYSJ,A0A0P0WA44_ORYSJ,A0A0P0X403_ORYSJ P0407H12.102 Os07g0234700 OsJ_23630 OSJNBa0061L20.122 OSNPB_070234700,Os08g0271800 OSNPB_080271800,Os07g0234900 OSNPB_070234900,Os04g0423050 OSNPB_040423050,Os04g0422800 OSNPB_040422800,Os07g0233500 OSNPB_070233500 ENOG411E4IV F18P9_20 Q9M1L9 Q9M1L9_ARATH DNA topoisomerase (EC 5.99.1.2) FUNCTION: Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. {ECO:0000256|RuleBase:RU362092}. 5.99.1.2 39913 DNA topoisomerase (EC 5.99.1.2) nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type I activity [GO:0003917]; zinc ion binding [GO:0008270]; DNA topological change [GO:0006265] locus:2078526; AT3G42860 GRF zinc finger NA NA NA NA NA NA NA ENOG411E4IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0477800 protein (cDNA clone:J013060B01, full insert sequence) Q6ZJC9 Q6ZJC9_ORYSJ Os08g0477800 OJ1666_A04.14 OsJ_27675 OSNPB_080477800 ENOG411E4IZ Q9LER5 Q9LER5_ARATH Proteasome assembly chaperone-like protein (Uncharacterized protein At5g14710) (Uncharacterized protein At5g14710/T9L3_10) (Uncharacterized protein T9L3_10) 13872 Proteasome assembly chaperone-like protein (Uncharacterized protein At5g14710) (Uncharacterized protein At5g14710/T9L3_10) (Uncharacterized protein T9L3_10) proteasome complex [GO:0000502] locus:2185430; AT5G14710 proteasome assembly chaperone Os01g0339600 protein,Os10g0395500 protein (Fragment) Q0JN17,A0A0P0XU48 Q0JN17_ORYSJ,A0A0P0XU48_ORYSJ Os01g0339600 Os01g0339600 OsJ_01616 OSNPB_010339600,Os10g0395500 OSNPB_100395500 ENOG411E4I4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4I5 Q9ZVM3,F4HX00,F4HX02,F4HX01 Q9ZVM3_ARATH,F4HX00_ARATH,F4HX02_ARATH,F4HX01_ARATH T22H22.11 protein (Translation initiation factor 3 subunit I),Translation initiation factor 3 subunit I 32239,31698,31001,24337 T22H22.11 protein (Translation initiation factor 3 subunit I),Translation initiation factor 3 subunit I translation initiation factor activity [GO:0003743] locus:2199471; AT1G54680 NA NA NA NA NA NA NA NA ENOG411E4I6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0170500 protein (Vip1 protein, putative, expressed) Q8S7W8 Q8S7W8_ORYSJ OSJNBa0091P11.4 Os03g0170500 LOC_Os03g07440 OsJ_09580 OSNPB_030170500 ENOG411E4I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Enoyl-CoA hydratase/isomerase family NA NA NA NA NA NA NA ENOG411E4I0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor family protein Os12g0407000 protein (SRF-type transcription factor family protein, expressed),Os12g0407400 protein Q2QT50,A3CGM8 Q2QT50_ORYSJ,A3CGM8_ORYSJ Os12g0407000 LOC_Os12g21850 OSNPB_120407000,Os12g0407400 OsJ_35842 OSNPB_120407400 ENOG411E4I1 Q940C2,Q94BX3,Q9SZZ7 Q940C2_ARATH,Q94BX3_ARATH,Q9SZZ7_ARATH AT5g52550/F6N7_3 (Stress response NST1-like protein),AT4g25670/L73G19_50 (Stress response NST1-like protein),AT4G25690 protein (AT4g25690/L73G19_70) (At4g25690) (Stress response NST1-like protein) (Uncharacterized protein AT4g25690) (Uncharacterized protein L73G19.70) 41043,20941,21428 AT5g52550/F6N7_3 (Stress response NST1-like protein),AT4g25670/L73G19_50 (Stress response NST1-like protein),AT4G25690 protein (AT4g25690/L73G19_70) (At4g25690) (Stress response NST1-like protein) (Uncharacterized protein AT4g25690) (Uncharacterized protein L73G19.70) locus:2149564;,locus:2131366;,locus:2131376; AT5G52550,AT4G25670,AT4G25690 NA Os06g0106900 protein (cDNA clone:J013102I20, full insert sequence) Q9LWX9 Q9LWX9_ORYSJ Os06g0106900 OsJ_19838 OSNPB_060106900 P0644B06.41 ENOG411E4I9 Q5Q0F5 Q5Q0F5_ARATH Uncharacterized protein 23307 Uncharacterized protein locus:2032402; AT1G24270 NA Os11g0490300 protein Q2R438 Q2R438_ORYSJ Os11g0490300 LOC_Os11g29810 OsJ_33926 OSNPB_110490300 ENOG411EE6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os06g0694200 protein (Putative lipase) (cDNA clone:002-119-F07, full insert sequence) Q5Z8K0 Q5Z8K0_ORYSJ Os06g0694200 OSNPB_060694200 P0550B04.25 ENOG411DZRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) Q6ZGT9 Q6ZGT9_ORYSJ Os02g0745400 Os02g0745400 OJ1118_G04.19 OSNPB_020745400 ENOG411DZRD RPS23A,RPS23B Q9SF35,P49201 RS231_ARATH,RS232_ARATH 40S ribosomal protein S23-1 (S12),40S ribosomal protein S23-2 (S12) R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15770,15736 40S ribosomal protein S23-1 (S12),40S ribosomal protein S23-2 (S12) cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2074954;,locus:2151301; AT3G09680,AT5G02960 40s ribosomal protein 40S ribosomal protein S23 (40S ribosomal protein S23, putative, expressed) (Os01g0834500 protein) (Os01g0834601 protein) (Os03g0818400 protein) (Putative 40s ribosomal protein S23) (cDNA clone:J023014I18, full insert sequence) (cDNA clone:J033102D01, full insert sequence),Os10g0350450 protein,Os01g0834600 protein (Fragment),Os10g0350001 protein (Fragment) Q8L4F2,A0A0P0XT53,A0A0P0VA20,A0A0P0XTN9 Q8L4F2_ORYSJ,A0A0P0XT53_ORYSJ,A0A0P0VA20_ORYSJ,A0A0P0XTN9_ORYSJ Os01g0834500 OJ1754_E06.3 LOC_Os03g60400 Os01g0834500 Os01g0834601 Os03g0818400 OSJNBa0094J08.4 OSNPB_010834500 OSNPB_030818400 P0460C04.38 P0460C04.39 P0506B12.5 P0506B12.6,Os10g0350450 OSNPB_100350450,Os01g0834600 OSNPB_010834600,Os10g0350001 OSNPB_100350001 ENOG411DZRE AUG2 O48767 AUG2_ARATH AUGMIN subunit 2 DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22505726}. FUNCTION: Contributes to the assembly of the acentrosomal spindle and phragmoplast microtubule arrays as part of the augmin complex. {ECO:0000269|PubMed:22505726}. 33019 AUGMIN subunit 2 microtubule [GO:0005874]; cytokinesis by cell plate formation [GO:0000911]; microtubule nucleation [GO:0007020]; microtubule organizing center organization [GO:0031023]; spindle assembly [GO:0051225] locus:2059390; AT2G32980 NA Os08g0204800 protein (cDNA clone:002-107-G02, full insert sequence) Q6ZCG3 Q6ZCG3_ORYSJ Os08g0204800 Os08g0204800 OsJ_26399 OSNPB_080204800 P0486F07.20 ENOG411DZRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA solute carrier family 35 member Os05g0444300 protein (cDNA clone:J013048I21, full insert sequence),Os05g0444500 protein Q6F2N6,A0A0P0WN10 Q6F2N6_ORYSJ,A0A0P0WN10_ORYSJ Os05g0444300 OsJ_18717 OSJNBa0020H14.19 OSNPB_050444300,Os05g0444500 OSNPB_050444500 ENOG411DZRY Q9ZUB7,O64602 Q9ZUB7_ARATH,O64602_ARATH At1g23790 (Dicer-like protein (DUF936)) (F5O8.34),At1g70340 (Dicer-like protein (DUF936)) (F17O7.12) 56947,56393 At1g23790 (Dicer-like protein (DUF936)) (F5O8.34),At1g70340 (Dicer-like protein (DUF936)) (F17O7.12) locus:2034850;,locus:2016199; AT1G23790,AT1G70340 expressed protein Os01g0108800 protein C7IWJ2 C7IWJ2_ORYSJ Os01g0108800 Os01g0108800 OSNPB_010108800 ENOG411DZR5 L2HGDH Q9LES4 L2HDH_ARATH L-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:26203119}. WT phenotype morphologically and with respect to nonphotochemical quenching. FUNCTION: Catalyzes the oxidation of (S)-2-hydroxyglutarate to 2-oxoglutarate. Is specific for the (S) enantiomer and possesses very poor activity toward (R)-2-hydroxyglutarate. Has no activity toward related 2-hydroxy acids, such as glycolate, L-lactate or D-lactate. {ECO:0000269|PubMed:26203119}. ARA:AT3G56840-MONOMER; 1.1.99.2 53526 L-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.2) mitochondrion [GO:0005739]; (S)-2-hydroxy-acid oxidase activity [GO:0003973]; 2-hydroxyglutarate dehydrogenase activity [GO:0047545]; FAD binding [GO:0071949] locus:2103660; AT3G56840 FAD dependent oxidoreductase Dehydrogenase-like protein (Os01g0809900 protein) (cDNA clone:J013162P12, full insert sequence) Q5VQP1 Q5VQP1_ORYSJ Os01g0809900 OsJ_03818 OSNPB_010809900 P0468B07.31 ENOG411EH6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF803 Probable magnesium transporter A0A0N7KSK2 A0A0N7KSK2_ORYSJ Os11g0197400 OSNPB_110197400 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. ENOG411DZJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-box binding protein MFMR G-box binding protein (Os01g0658900 protein) Q7E0Y1 Q7E0Y1_ORYSJ Os01g0658900 Os01g0658900 OsJ_02888 OSNPB_010658900 ENOG411DZJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os10g0579800 protein (POT family protein, expressed) (Putative peptide transporter) (cDNA clone:J013092G19, full insert sequence) Q7XBS5 Q7XBS5_ORYSJ LOC_Os10g42900 Os10g0579800 OsJ_32603 OSJNBa0056G17.27 OSNPB_100579800 ENOG411DZJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZJ6 CBL10 Q7FRS8,A0A1P8B705,A0A1P8B704,B3H7L8 CNBLA_ARATH,A0A1P8B705_ARATH,A0A1P8B704_ARATH,B3H7L8_ARATH Calcineurin B-like protein 10 (SOS3-like calcium binding protein 8) (SCaBP8),Calcineurin B-like protein 10 DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions but hypersensitivity to salt stress. {ECO:0000269|PubMed:17449811, ECO:0000269|PubMed:17825054, ECO:0000269|PubMed:23331977}. hypersensitive to NaCl. Sensitive to salt stress-S. Luan-2007 FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Mediates salt tolerance, but only when phosphorylated. Competes with CIPK23 for a direct binding to AKT1, negatively regulating its activity via a protein kinase-independent mechanism. {ECO:0000269|PubMed:17449811, ECO:0000269|PubMed:17825054, ECO:0000269|PubMed:23331977}. 29342,22263,24525,17632 Calcineurin B-like protein 10 (SOS3-like calcium binding protein 8) (SCaBP8),Calcineurin B-like protein 10 cytoplasm [GO:0005737]; endosome [GO:0005768]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; hyperosmotic salinity response [GO:0042538]; regulation of ion homeostasis [GO:2000021]; regulation of potassium ion transport [GO:0043266],calcium ion binding [GO:0005509] TISSUE SPECIFICITY: Expressed in shoots, leaves, stems, flowers and siliques. Barely detected in roots. {ECO:0000269|PubMed:17825054}. locus:2123767; AT4G33000 calcineurin b-like protein Calcineurin B-like protein 9,Calcineurin B-like protein 10,Os01g0579600 protein,Os01g0579600 protein (Fragment) Q3HRN8,Q3HRN7,A0A0N7KD77,A0A0P0V4J3 CNBL9_ORYSJ,CNBLA_ORYSJ,A0A0N7KD77_ORYSJ,A0A0P0V4J3_ORYSJ CBL9 Os01g0579600 LOC_Os01g39770,CBL10 Os01g0711500 LOC_Os01g51420 B1142C05.7 OsJ_003119 P0456F08.32,Os01g0579600 OSNPB_010579600 FUNCTION: Acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. Binding of a CBL protein to the regulatory NAF domain of a CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DZJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Helix-loop-helix DNA-binding protein-like (Os09g0468700 protein) Q6K4B1 Q6K4B1_ORYSJ Os09g0468700 Os09g0468700 OJ1595_D08.4 OsJ_29696 OSNPB_090468700 P0676H02.22 ENOG411DZJ9 ROT3 Q9M066,A0A1P8B4R4 C90C1_ARATH,A0A1P8B4R4_ARATH 3-epi-6-deoxocathasterone 23-monooxygenase (EC 1.14.13.112) (Cytochrome P450 90C1) (Protein ROTUNDIFOLIA 3),Cytochrome P450 superfamily protein DISRUPTION PHENOTYPE: Plants with short petioles and round leaves. Altered polar elongation of leaf cells. {ECO:0000269|PubMed:9694802}. Petals sepals stamens and pistils were all of reduced length.,The lengths of all the true leaves (foliage leaves) of the mutants were shorter than those of the wild type.,The petioles of the rot3 mutant plants were shorter than those of the wild type.,The width of the true leaves of the mutants were similar to those of the wild type.,Petals sepals stamens and pistils are all larger than those of wild type.,The average length of the hypocotyl and primary root of the rot3-2 mutant 9 days after sowing did not differ from those of the wild type as was true also for the rot3-1 mutant. However cotyledons of the rot3-2 mutant were slightly larger than those of the wild type whereas the rot3-1 mutant had normal cotyledons.,The leaves of the rot3-2 mutant were longer than those of the wild type.,The leaves of the rot3-2 mutant were wider than those of the wild type.,thick floral stems; encodes a protein of the cytochrome P-450 family required for the regulated polar elongation of leaf cells.,Flowers of the mutant have shorter petals and anthers. The pistil is much longer than the anthers leading to a reduction in self-fertilization. The stigma emerges early from flower bud.,No Major recognizable developmental defects apart from somewhat rounded cotyledons compared to those of wild type plants.,One-month-old plants have a more compact rosette than wild type plants resulting from a reduction in petiole length. Additionally inflorescence stems were shorted and thicker with larger cauline leaves.,Dwarf phenotype.,Flowers are male sterile as they never open to release pollen even though the capsule size is normal.,Flowers are smaller and develop one week later than wild type or single mutants.,In etiolated seedlings hypocotyl length is less than 10% of that of wild type control and the cotyledons were open.,Light grown seedlings have a reduced hypocotyl length as well as short epinastic cotyledons.,Severely dwarfed with globular shape and curly succulent leaves. Short, rounded leaves; Short petioles and floral organs-H. Uchimiya-1996 FUNCTION: C-23 hydroxylase involved in brassinosteroids biosynthesis. Converts directly (22S,24R)-22-hydroxy-5-alpha-ergostan-3-one and 3-epi-6-deoxocathasterone to 3-dehydro-6-deoxoteasterone and 6-deoxotyphasterol. These C-23 hydroxylation shortcuts bypass campestanol, 6-deoxocathasterone, and 6-deoxoteasterone. Functionally redundant with CYP90D1. {ECO:0000269|PubMed:15703058, ECO:0000269|PubMed:17138693}. PATHWAY: Plant hormone biosynthesis; brassinosteroid biosynthesis. ARA:AT4G36380-MONOMER;MetaCyc:AT4G36380-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.13.112; 1.14.13.112 59356,48404 3-epi-6-deoxocathasterone 23-monooxygenase (EC 1.14.13.112) (Cytochrome P450 90C1) (Protein ROTUNDIFOLIA 3),Cytochrome P450 superfamily protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; (22S)-22-hydroxy-5alpha-campestan-3-one C-23 hydroxylase activity [GO:0102097]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; monopolar cell growth [GO:0042814]; petal development [GO:0048441]; stamen development [GO:0048443]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15703058, ECO:0000269|PubMed:9694802}. locus:2115220; AT4G36380 cytochrome P450 CYP85 clan NA NA NA NA NA NA NA ENOG411DZJA F4JZ42,F4JZ43,F4JZ44 F4JZ42_ARATH,F4JZ43_ARATH,F4JZ44_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 44209,36193,41855 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; RNA methylation [GO:0001510],methyltransferase activity [GO:0008168]; RNA binding [GO:0003723] locus:2156902; AT5G66180 NOL1/NOP2/sun family Os02g0320100 protein (Phosphate/phosphoenolpyruvate translocator-like) (cDNA clone:J033121G21, full insert sequence) Q6EQW4 Q6EQW4_ORYSJ Os02g0320100 Os02g0320100 OSJNBa0086N11.24 OSNPB_020320100 ENOG411DZJB Q9SZX3,B3H778 ASSY_ARATH,B3H778_ARATH Argininosuccinate synthase, chloroplastic (EC 6.3.4.5) (Citrulline--aspartate ligase),Arginosuccinate synthase family PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3. ARA:AT4G24830-MONOMER; 6.3.4.5 53846,49029 Argininosuccinate synthase, chloroplastic (EC 6.3.4.5) (Citrulline--aspartate ligase),Arginosuccinate synthase family chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; plastid [GO:0009536]; argininosuccinate synthase activity [GO:0004055]; ATP binding [GO:0005524]; arginine biosynthetic process [GO:0006526]; argininosuccinate metabolic process [GO:0000053]; urea cycle [GO:0000050],argininosuccinate synthase activity [GO:0004055]; ATP binding [GO:0005524]; arginine biosynthetic process [GO:0006526] locus:2126803; AT4G24830 argininosuccinate synthase Argininosuccinate synthase, chloroplast, putative, expressed (Os12g0235800 protein),Os12g0235800 protein (Fragment),Os11g0303050 protein (Fragment) Q2QVC1,A0A0N7KTS9,A0A0P0Y908,A0A0P0Y1E8 Q2QVC1_ORYSJ,A0A0N7KTS9_ORYSJ,A0A0P0Y908_ORYSJ,A0A0P0Y1E8_ORYSJ Os12g0235800 LOC_Os12g13320 Os12g0235800 OsJ_35666 OSNPB_120235800,Os12g0235800 OSNPB_120235800,Os11g0303050 OSNPB_110303050 ENOG411DZJC Q9LJ72 Q9LJ72_ARATH Proteasome assembly chaperone 2 FUNCTION: Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. {ECO:0000256|PIRNR:PIRNR010044}. 30913 Proteasome assembly chaperone 2 cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome assembly [GO:0043248] locus:2085919; AT3G18940 proteasome assembly chaperone Proteasome assembly chaperone 2 Q7Y0D3 Q7Y0D3_ORYSJ OSJNBa0079B15.8 Os03g0766900 OsJ_12716 OSNPB_030766900 FUNCTION: Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. {ECO:0000256|PIRNR:PIRNR010044}. ENOG411DZJF ERDJ2A Q0WT48 DNJ21_ARATH DnaJ protein ERDJ2A (Chaperone protein dnaJ 21) (AtDjC21) (AtJ21) (Endoplasmic reticulum dnaJ domain-containing protein 2A) (AtERdj2A) (Translocation protein SEC63 homolog ERDJ2A) DISRUPTION PHENOTYPE: Male gametophytic lethal due to defect in pollen germination and pollen tube growth. {ECO:0000269|PubMed:18718935}. Reduced transmission through pollen. Pollen grains are viable but pollen germination is aberrant. Homozygotes cannot be recovered. Male gametophyte defective; Embryo defective (inferred)-S. Nishikawa-2008 FUNCTION: Required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane. {ECO:0000250}. R-ATH-381038; 76904 DnaJ protein ERDJ2A (Chaperone protein dnaJ 21) (AtDjC21) (AtJ21) (Endoplasmic reticulum dnaJ domain-containing protein 2A) (AtERdj2A) (Translocation protein SEC63 homolog ERDJ2A) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of endoplasmic reticulum membrane [GO:0030176]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; protein transporter activity [GO:0008565]; posttranslational protein targeting to membrane, translocation [GO:0031204] TISSUE SPECIFICITY: Expressed in leaves, flower buds and flowers. {ECO:0000269|PubMed:18718935}. locus:2016354; AT1G79940 translocation protein SEC63 DnaJ protein ERDJ2 (Chaperone protein dnaJ C43) (OsDjC43) (Endoplasmic reticulum dnaJ domain-containing protein 2) (OsERdj2),Os04g0307200 protein (Fragment) Q7XVN7,A0A0P0W8I5 DJC43_ORYSJ,A0A0P0W8I5_ORYSJ ERDJ2 DJC43 Os04g0307200 LOC_Os04g24180 OsJ_14220 OSJNBa0023J03.11 OSJNBa0024J22.1,Os04g0307200 OSNPB_040307200 FUNCTION: May be required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane. {ECO:0000305|PubMed:24153418}. ENOG411DZJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os02g0779600 protein,Os02g0539900 protein A3BNE9,A0A0P0VK52 A3BNE9_ORYSJ,A0A0P0VK52_ORYSJ Os02g0779600 OsJ_25579 OSNPB_020779600,Os02g0539900 OSNPB_020539900 ENOG411DZJH ERF117 Q9M9B2 EF117_ARATH Ethylene-responsive transcription factor ERF117 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 37478 Ethylene-responsive transcription factor ERF117 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2028426; AT1G49120 transcription Os09g0309700 protein (cDNA clone:J023105G21, full insert sequence) Q0J2R6 Q0J2R6_ORYSJ Os09g0309700 Os09g0309700 OSNPB_090309700 ENOG411DZJI O49737,Q8L837,A0A1P8ANI0,F4I4R0 O49737_ARATH,Q8L837_ARATH,A0A1P8ANI0_ARATH,F4I4R0_ARATH Beta-1, 3-glucanase-like protein (Glycosyl hydrolase superfamily protein),Beta-1,3-glucanase-like protein (Glycosyl hydrolase superfamily protein),Glycosyl hydrolase superfamily protein ARA:AT4G18340-MONOMER; 42405,44162,42517,45413 Beta-1, 3-glucanase-like protein (Glycosyl hydrolase superfamily protein),Beta-1,3-glucanase-like protein (Glycosyl hydrolase superfamily protein),Glycosyl hydrolase superfamily protein hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2141867;,locus:2198294; AT4G18340,AT1G30080 Glycosyl hydrolase family 17 protein Os06g0531000 protein (Fragment) A0A0P0WX98 A0A0P0WX98_ORYSJ Os06g0531000 OSNPB_060531000 ENOG411DZJK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein NB-ARC domain containing protein, expressed (Os12g0281600 protein),NB-ARC domain containing protein, expressed (Os11g0686500 protein) (cDNA clone:J013074H11, full insert sequence),NB-ARC domain containing protein, expressed (Os11g0684700 protein),Os05g0479800 protein,Os12g0281600 protein Q2QTV5,Q2QZH9,Q2QZJ3,A0A0P0WNT4,A0A0P0Y906 Q2QTV5_ORYSJ,Q2QZH9_ORYSJ,Q2QZJ3_ORYSJ,A0A0P0WNT4_ORYSJ,A0A0P0Y906_ORYSJ LOC_Os12g18374 Os12g0281600 OSNPB_120281600,Os11g0686500 LOC_Os11g45930 Os11g0686500 OsJ_34781 OSNPB_110686500,Os11g0684700 LOC_Os11g45790 Os11g0684700 OSNPB_110684700,Os05g0479800 OSNPB_050479800,Os12g0281600 OSNPB_120281600 ENOG411DZJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DZC Protein Brevis radix-like 1 (OsBRXL1) Q6YUB8 BRXL1_ORYSJ BRXL1 Os08g0462700 LOC_Os08g36020 B1111C03.19 B1116H04.7 OsJ_27591 ENOG411DZJN A0A1P8BDH9,A0A1P8BDI4,Q9FNA6,A0A1P8BDI6,B3H544 A0A1P8BDH9_ARATH,A0A1P8BDI4_ARATH,Q9FNA6_ARATH,A0A1P8BDI6_ARATH,B3H544_ARATH N-lysine methyltransferase,N-lysine methyltransferase (Uncharacterized protein At5g13660) 50467,48543,60231,50595,60359 N-lysine methyltransferase,N-lysine methyltransferase (Uncharacterized protein At5g13660) methyltransferase activity [GO:0008168] locus:2173179; AT5G13660 NA NA NA NA NA NA NA NA ENOG411DZJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os06g0287700 protein,Os06g0125000 protein (Putative NBS-LRR disease resistance protein),NBS-LRR type R protein Nbs1-NPB (Os06g0286500 protein) (Putative NBS-LRR disease resistance protein),Os06g0146100 protein (Putative NBS-LRR disease resistance protein),Os06g0286700 protein,Os06g0287500 protein (Fragment),Os06g0287200 protein,Os06g0287000 protein C7J3D2,Q9LWW7,Q5VN81,Q5VP50,A0A0P0WVI0,A0A0P0WVC9,A0A0P0WVD9,A0A0P0WVG7 C7J3D2_ORYSJ,Q9LWW7_ORYSJ,Q5VN81_ORYSJ,Q5VP50_ORYSJ,A0A0P0WVI0_ORYSJ,A0A0P0WVC9_ORYSJ,A0A0P0WVD9_ORYSJ,A0A0P0WVG7_ORYSJ Os06g0287700 Os06g0287700 OSNPB_060287700,Os06g0125000 Os06g0125000 OSNPB_060125000 P0425F02.21,Os06g0286500 b29O05.5 OsJ_21008 OSNPB_060286500 P0649C11.5,Os06g0146100 OsJ_20116 OSJNBa0007O20.32 OSNPB_060146100 P0036F10.15,Os06g0286700 OSNPB_060286700,Os06g0287500 OSNPB_060287500,Os06g0287200 OSNPB_060287200,Os06g0287000 OSNPB_060287000 ENOG411DZJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transport factor 2 (NTF2) domain Os07g0603100 protein (Putative Ras-GTPase activating protein SH3 domain-binding protein 2) (cDNA clone:J033034P09, full insert sequence) Q6YW02 Q6YW02_ORYSJ Os07g0603100 OsJ_25027 OSJNBb0018H10.27 OSJNBb0039M16.17 OSNPB_070603100 ENOG411DZJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os06g0121500 protein,Os06g0121800 protein Q0DF21,A0A0P0WSC6 Q0DF21_ORYSJ,A0A0P0WSC6_ORYSJ Os06g0121500 Os06g0121500 OSNPB_060121500,Os06g0121800 OSNPB_060121800 ENOG411DZJT ARF4 Q9ZTX9,A0A1P8BF20 ARFD_ARATH,A0A1P8BF20_ARATH Auxin response factor 4,Auxin response factor Short internodes abnormal phyllotaxy misshapen floral organs variable floral organ numbers gynoecium lacks valve tissue abnormally positioned ovules. Resembles kanadi homozygous mutants. FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 87284,85123 Auxin response factor 4,Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abaxial cell fate specification [GO:0010158]; auxin-activated signaling pathway [GO:0009734]; transcription, DNA-templated [GO:0006351]; vegetative phase change [GO:0010050],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. locus:2175098; AT5G60450 auxin response factor NA NA NA NA NA NA NA ENOG411DZJU SEI1 Q9FFD9 SEI1_ARATH Seipin-1 (AtSEIPIN1) FUNCTION: Involved in lipid metabolism and lipid droplet (LD) morphology, number, and size. Facilitates the formation of large-sized LDs and modulates triacylglycerol accumulation. Induces probably a reorganization of the endoplasmic reticulum into LD-forming domains. {ECO:0000269|PubMed:26362606}. MISCELLANEOUS: Knockdown mutants have a reduced accumulation of oil per seed and a reduced overall seed size. {ECO:0000269|PubMed:26362606}. 42479 Seipin-1 (AtSEIPIN1) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; lipid metabolic process [GO:0006629]; lipid particle organization [GO:0034389]; lipid storage [GO:0019915]; seed development [GO:0048316]; seed oilbody biogenesis [GO:0010344] TISSUE SPECIFICITY: Expressed in seeds and young seedlings. Not detected in leaves. {ECO:0000269|PubMed:26362606}. locus:2171412; AT5G16460 Putative adipose-regulatory protein (Seipin) Expressed protein (Os12g0148700 protein) (cDNA clone:002-126-F05, full insert sequence) Q2QXP5 Q2QXP5_ORYSJ Os12g0148700 LOC_Os12g05330 Os12g0148700 OSNPB_120148700 ENOG411DZJV DMR6 Q9FLV0 DMR6_ARATH Protein DOWNY MILDEW RESISTANCE 6 (AtDMR6) (EC 1.14.11.-) (2-oxoglutarate (2OG)-Fe(II) oxygenase-like protein DMR6) (Salicylate 3-hydroxylase DMR6) (S3H DMR6) (SA 3-hydroxylase DMR6) (Salicylic acid 3-hydroxylase DMR6) (EC 1.14.13.-) DISRUPTION PHENOTYPE: In the double mutant eds1-2 dmr6-1 and in dmr6-2, reduced susceptibility to the downy mildew pathogen Hyaloperonospora arabidopsidis (PubMed:15986928, PubMed:18248595, PubMed:25376907). Reduced hyphal growth due to immature haustoria, often with aberrant shapes (PubMed:15986928, PubMed:18248595). Reduced susceptibility to Pseudomonas syringae pv. tomato DC3000 and the oomycete Phytophthora capsici, associated with enhanced defense gene expression and elevated salicylic acid levels (PubMed:25376907). Normal susceptibility to P. syringae pv. tomato and Golovinomyces orontii (PubMed:15986928). Enhanced expression of a subset of defense-associated genes (PubMed:18248595). {ECO:0000269|PubMed:15986928, ECO:0000269|PubMed:18248595, ECO:0000269|PubMed:25376907}. Resistant to Hyaloperonospora parasitica-G. Van den Ackerveken-2008 FUNCTION: Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity). Suppressor of immunity. Regulates negatively defense associated genes expression (e.g. PR-1, PR-2, and PR-5) (PubMed:18248595, PubMed:25376907). Negative regulator of defense against Hyaloperonospora arabidopsidis (PubMed:25376907). {ECO:0000250|UniProtKB:Q9ZSA8, ECO:0000269|PubMed:18248595, ECO:0000269|PubMed:25376907}.; FUNCTION: (Microbial infection) Required for susceptibility to the downy mildew pathogen Hyaloperonospora arabidopsidis. {ECO:0000269|PubMed:15986928, ECO:0000269|PubMed:18248595, ECO:0000269|PubMed:25376907}.; FUNCTION: (Microbial infection) Required for susceptibility to Pseudomonas syringae pv. tomato DC3000. {ECO:0000269|PubMed:25376907}.; FUNCTION: (Microbial infection) Required for susceptibility to the oomycete Phytophthora capsici. {ECO:0000269|PubMed:25376907}. ARA:AT5G24530-MONOMER; 1.14.11.-; 1.14.13.- 39364 Protein DOWNY MILDEW RESISTANCE 6 (AtDMR6) (EC 1.14.11.-) (2-oxoglutarate (2OG)-Fe(II) oxygenase-like protein DMR6) (Salicylate 3-hydroxylase DMR6) (S3H DMR6) (SA 3-hydroxylase DMR6) (Salicylic acid 3-hydroxylase DMR6) (EC 1.14.13.-) flavone synthase activity [GO:0033759]; metal ion binding [GO:0046872]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; flavonoid biosynthetic process [GO:0009813]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; response to oomycetes [GO:0002239]; response to salicylic acid [GO:0009751]; salicylic acid catabolic process [GO:0046244] locus:2153924; AT5G24530 )-oxidoreductase Os03g0122300 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (cDNA clone:006-204-B12, full insert sequence),Os04g0581000 protein Q10SI2,B9FC47 Q10SI2_ORYSJ,B9FC47_ORYSJ Os03g0122300 LOC_Os03g03034 Os03g0122300 OsJ_09221 OSNPB_030122300,Os04g0581000 OsJ_15896 OSNPB_040581000 ENOG411DZJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rp1-like protein Os11g0245800 protein (Fragment),Bacterial blight disease resistance related protein (Os05g0365300 protein) (Putative NBS-LRR type disease resistance protein) (cDNA clone:J013050D17, full insert sequence),Os01g0782100 protein (Putative rust resistance protein Rp1-kp1) (Rp1-like protein),Os01g0781200 protein (Putative rust resistance protein) (Rp1-like protein),Os01g0781100 protein (Putative rust resistance protein) (cDNA, clone: J100023D19, full insert sequence),Os11g0555300 protein,Os02g0137900 protein,Os01g0781700 protein,Os05g0365300 protein (Fragment) Q0ITL2,Q5WMM8,Q8LQR6,Q8LQR8,Q8LQR9,A0A0N7KT26,A0A0P0VEC8,A0A0P0V926,A0A0P0WLD6 Q0ITL2_ORYSJ,Q5WMM8_ORYSJ,Q8LQR6_ORYSJ,Q8LQR8_ORYSJ,Q8LQR9_ORYSJ,A0A0N7KT26_ORYSJ,A0A0P0VEC8_ORYSJ,A0A0P0V926_ORYSJ,A0A0P0WLD6_ORYSJ Os11g0245800 Os11g0245800 OSNPB_110245800,Os05g0365300 Os05g0365300 OsJ_18255 OSNPB_050365300 P0683B02.12,Os01g0782100 Os01g0782100 B1100D10.22 OsJ_03686 OSNPB_010782100,Os01g0781200 B1100D10.9 OsJ_03681 OSNPB_010781200,Os01g0781100 B1100D10.7 OSNPB_010781100,Os11g0555300 OSNPB_110555300,Os02g0137900 OSNPB_020137900,Os01g0781700 OSNPB_010781700,Os05g0365300 OSNPB_050365300 ENOG411DZJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411E0P4 CYCH1-1,CYCH:1 Q8W5S1,A0A1P8BAW8,A0A1P8BAX1 CCH11_ARATH,A0A1P8BAW8_ARATH,A0A1P8BAX1_ARATH Cyclin-H1-1 (CycH1;1),Cyclin H1 FUNCTION: Associates with CDK-2 and CDK-3 and activates the CDK kinases. {ECO:0000269|PubMed:15486101}. R-ATH-113418;R-ATH-5696395;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-69202;R-ATH-69273;R-ATH-69656;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 38131,41746,34090 Cyclin-H1-1 (CycH1;1),Cyclin H1 cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; protein kinase activity [GO:0004672]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; reactive oxygen species metabolic process [GO:0072593]; regulation of response to water deprivation [GO:2000070]; regulation of stomatal movement [GO:0010119]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637]; response to water deprivation [GO:0009414]; stomatal opening [GO:1990069] locus:2143671; AT5G27620 cyclin H Cyclin-H1-1 (CycH1;1) (Cyclin-H-1) (CycH-1) Q10D80 CCH11_ORYSJ CYCH1-1 CYCH-1 Os03g0737600 LOC_Os03g52750 OsJ_12494 OSJNBa0084L17.8 OSJNBb0016H12.25 FUNCTION: Involved in cell cycle regulation. May be a regulatory subunit of CDKD-1/CAK-R2. {ECO:0000269|PubMed:11029700, ECO:0000269|PubMed:12799469}. ENOG411E0P3 GPX3,GPX2 O22850,O04922 GPX3_ARATH,GPX2_ARATH Probable glutathione peroxidase 3, mitochondrial (EC 1.11.1.9),Probable glutathione peroxidase 2 (EC 1.11.1.9) DISRUPTION PHENOTYPE: Leaves of plants lacking GPX3 are 1 degree Celsius lower than normal plants, whereas leaves from plants over-expressing GPX3 are 1.2 degrees Celsius higher, probably because of the impaired evapotranspiration. {ECO:0000269|PubMed:16998070}. mutant seed germination is hypersensitive to mannitol. Mutants are sensitive to and produce more H2O2. ABA impaired stomatal closure in atgpx3-1 mutant plants. Increased water loss under drought; Germination and seedling growth sensitive to hydrogen peroxide-C. Song-2006 FUNCTION: May constitute a glutathione peroxidase-like protective system against oxidative stresses. Involved positively in abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, seed germination and inhibition of vegetative growth. Oxidizes and represses target proteins (e.g. the phosphatase activity of ABI1 and ABI2) when oxidized by H(2)O(2), probably after ABA signaling. Modulates the calcium channel activity in guard cells in response to ABA or H(2)O(2). Confers tolerance to drought stress, by enhancing the ABA-dependent stomatal closure. {ECO:0000269|PubMed:16998070}.,FUNCTION: May constitute a glutathione peroxidase-like protective system against oxidative stresses. {ECO:0000250}. MISCELLANEOUS: The reduced form of ABI2 is converted to the oxidized form by the addition of oxidized GPX3. ARA:AT2G43350-MONOMER;,ARA:AT2G31570-MONOMER; R-ATH-2142712; 1.11.1.9; 1.11.1.9 23258,18945 Probable glutathione peroxidase 3, mitochondrial (EC 1.11.1.9),Probable glutathione peroxidase 2 (EC 1.11.1.9) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]; glutathione peroxidase activity [GO:0004602]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to water deprivation [GO:0042631]; response to hydrogen peroxide [GO:0042542],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; glutathione peroxidase activity [GO:0004602]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14617062}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, green siliques and roots. {ECO:0000269|PubMed:14617062}. locus:2058233;,locus:2065928; AT2G43350,AT2G31570 glutathione peroxidase Glutathione peroxidase (Fragment) Q0ITA3 Q0ITA3_ORYSJ Os11g0284900 Os11g0284900 OSNPB_110284900 ENOG411E0P1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein family UPF0114 Expressed protein (Os03g0739700 protein) (cDNA clone:001-100-A10, full insert sequence) Q7Y1G8 Q7Y1G8_ORYSJ OSJNBa0057G07.10 LOC_Os03g52910 Os03g0739700 OsJ_12504 OSNPB_030739700 ENOG411E0P0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Conserved hypothetical protein Expressed protein (Os03g0559700 protein) Q851B5 Q851B5_ORYSJ OSJNBa0023A13.4 LOC_Os03g36080 Os03g0559700 OSNPB_030559700 ENOG411E0P9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HECTc NA NA NA NA NA NA NA ENOG411E0PW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DIRP Os01g0193900 protein (Fragment) A0A0N7KCH7,A0A0P0UZW0 A0A0N7KCH7_ORYSJ,A0A0P0UZW0_ORYSJ Os01g0193900 OSNPB_010193900 ENOG411E0PV ATL51,ATL52 Q9SRQ8,Q9LF64 ATL51_ARATH,ATL52_ARATH RING-H2 finger protein ATL51 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL51),RING-H2 finger protein ATL52 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL52) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 38858,39749 RING-H2 finger protein ATL51 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL51),RING-H2 finger protein ATL52 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL52) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to karrikin [GO:0080167],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:15010618}. locus:2096444;,locus:2151421; AT3G03550,AT5G17600 finger protein NA NA NA NA NA NA NA ENOG411E0PU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromo domain protein Probable chromo domain-containing protein LHP1 (Protein LIKE HETEROCHROMATIN PROTEIN 1) Q339W7 LHP1_ORYSJ LHP1 Os10g0324900 LOC_Os10g17770 OSJNBa0065C16.1 OSJNBa0093I09.2 FUNCTION: Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression (By similarity). {ECO:0000250}. ENOG411E0PT Q94F16,F4J7C3 Q94F16_ARATH,F4J7C3_ARATH Phospholipid/glycerol acyltransferase family protein (Uncharacterized protein At3g05510) (Uncharacterized protein F22F7.4),Phospholipid/glycerol acyltransferase family protein 50344,39690 Phospholipid/glycerol acyltransferase family protein (Uncharacterized protein At3g05510) (Uncharacterized protein F22F7.4),Phospholipid/glycerol acyltransferase family protein intrinsic component of membrane [GO:0031224]; O-acyltransferase activity [GO:0008374]; phospholipid metabolic process [GO:0006644],transferase activity, transferring acyl groups [GO:0016746]; phospholipid metabolic process [GO:0006644] locus:2079772; AT3G05510 Acyltransferase Os01g0931300 protein (Putative tafazzin isoform),Os01g0931300 protein (Tafazzin isoform-like) Q5JK26,Q5JK25 Q5JK26_ORYSJ,Q5JK25_ORYSJ P0506E04.19-1 Os01g0931300 OSJNBa0052O12.41-1 OSNPB_010931300,P0506E04.19-2 Os01g0931300 OSJNBa0052O12.41-2 OSNPB_010931300 ENOG411E0PP ALMT10 O23086 ALMTA_ARATH Aluminum-activated malate transporter 10 (AtALMT10) FUNCTION: Malate transporter. {ECO:0000250}. 55516 Aluminum-activated malate transporter 10 (AtALMT10) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; malate transmembrane transporter activity [GO:0015140] locus:2134633; AT4G00910 Aluminum-activated malate transporter Os02g0673100 protein (Fragment) A0A0P0VMX3 A0A0P0VMX3_ORYSJ Os02g0673100 OSNPB_020673100 ENOG411E0PZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein Os09g0491868 protein A0A0P0XNV1 A0A0P0XNV1_ORYSJ Os09g0491868 OSNPB_090491868 ENOG411E0PX ILL6 Q8VYX0 ILL6_ARATH IAA-amino acid hydrolase ILR1-like 6 (EC 3.5.1.-) (Protein gr1) (jasmonoyl-L-amino acid hydrolase) (EC 3.5.1.127) FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA). Also hydrolyzes amino acid conjugates of jasmonic acid and 12-hydroxy jasmonic acid. {ECO:0000269|PubMed:24052260}. ARA:AT1G44350-MONOMER; 3.5.1.-; 3.5.1.127 50820 IAA-amino acid hydrolase ILR1-like 6 (EC 3.5.1.-) (Protein gr1) (jasmonoyl-L-amino acid hydrolase) (EC 3.5.1.127) jasmonyl-Ile conjugate hydrolase activity [GO:1990206]; metal ion binding [GO:0046872]; jasmonic acid metabolic process [GO:0009694]; regulation of systemic acquired resistance [GO:0010112]; response to jasmonic acid [GO:0009753] locus:2823614; AT1G44350 Iaa-amino acid hydrolase IAA-amino acid hydrolase ILR1-like 6 (EC 3.5.1.-) Q5Z678 ILL6_ORYSJ ILL6 Os06g0691400 LOC_Os06g47620 OsJ_22451 P0532H03.15 FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA). {ECO:0000250}. ENOG411E0PG Q8L6Z4 Q8L6Z4_ARATH At3g49080 (Ribosomal protein S5 domain 2-like superfamily protein) (Uncharacterized protein At3g49080:At3g49090) (Uncharacterized protein At3g49090) FUNCTION: Mitochondrial ribosomal protein required for central cell maturation. May work together with PIA2 in controlling female gametophyte development, possibly by regulating the expression of some mitochondrial proteins. {ECO:0000269|PubMed:29312411}. 47988 At3g49080 (Ribosomal protein S5 domain 2-like superfamily protein) (Uncharacterized protein At3g49080:At3g49090) (Uncharacterized protein At3g49090) small ribosomal subunit [GO:0015935]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; translation [GO:0006412] locus:2101373; AT3G49080 Ribosomal protein S9 Os07g0658200 protein (Putative 30S ribosomal protein S9) (cDNA clone:J023022A05, full insert sequence),Os07g0658200 protein Q7XAM9,Q0D3Z1 Q7XAM9_ORYSJ,Q0D3Z1_ORYSJ OJ1477_F01.110-2 Os07g0658200 P0047B07.131-2 OSNPB_070658200,Os07g0658200 Os07g0658200 OSNPB_070658200 ENOG411E0PD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0800900 protein (Fragment),Os01g0800800 protein (Fragment) C7IXG9,Q0JIH8 C7IXG9_ORYSJ,Q0JIH8_ORYSJ Os01g0800900 Os01g0800900 OSNPB_010800900,Os01g0800800 Os01g0800800 OSNPB_010800800 ENOG411E0PN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os09g0460700 protein (Putative PrMC3) (cDNA clone:002-142-C08, full insert sequence),Os09g0460400 protein (Putative PrMC3) (cDNA clone:J013094M19, full insert sequence),Os09g0460300 protein (Putative PrMC3) (cDNA clone:J023102G04, full insert sequence),Os09g0460500 protein (Fragment) Q67J05,Q67J09,Q67J10,A0A0P0XNK8 Q67J05_ORYSJ,Q67J09_ORYSJ,Q67J10_ORYSJ,A0A0P0XNK8_ORYSJ Os09g0460700 OSJNBa0054F02.30 OSNPB_090460700,Os09g0460400 Os09g0460400 OsJ_24195 OSJNBa0054F02.26 OSNPB_090460400,Os09g0460300 OSJNBa0054F02.24 OSNPB_090460300,Os09g0460500 OSNPB_090460500 ENOG411E0PH F4HWC5 F4HWC5_ARATH Cysteine/Histidine-rich C1 domain family protein 33669 Cysteine/Histidine-rich C1 domain family protein cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2037422; AT1G20990 DC1 domain-containing protein Os09g0492800 protein A0A0P0XPC2 A0A0P0XPC2_ORYSJ Os09g0492800 OSNPB_090492800 ENOG411E689 T15B3_160 Q9LXV9 Q9LXV9_ARATH Thylakoid lumenal P17.1 protein (Uncharacterized protein At3g44020/T15B3_160) (Uncharacterized protein T15B3_160) 17059 Thylakoid lumenal P17.1 protein (Uncharacterized protein At3g44020/T15B3_160) (Uncharacterized protein T15B3_160) integral component of membrane [GO:0016021] locus:2097164; AT3G44020 NA Os01g0930000 protein (cDNA clone:J013041M02, full insert sequence) Q5JK34 Q5JK34_ORYSJ Os01g0930000 Os01g0930000 OsJ_04642 OSJNBa0052O12.27 OSNPB_010930000 P0506E04.5 ENOG411E688 KINETOCHORE NULL 2 A0A1P8BHH1,A0A1P8BHH3,F4KCE9 A0A1P8BHH1_ARATH,A0A1P8BHH3_ARATH,F4KCE9_ARATH Dentin sialophosphoprotein-like protein FUNCTION: Involved in recognition of centromeres and centromeric localization of the centromere-specific histone HTR12/CENH3. Required for normal progression of mitosis and meiosis. May play a role in the determination of the epigenetic status of centromeres (PubMed:24014547). Binds DNA and RNA in vitro (PubMed:28062749). {ECO:0000269|PubMed:24014547, ECO:0000269|PubMed:28062749}. 66126,64231,66055 Dentin sialophosphoprotein-like protein chromocenter [GO:0010369]; nucleoplasm [GO:0005654]; positive regulation of CENP-A containing nucleosome assembly [GO:1903099] locus:2181748; AT5G02520 SANTA (SANT Associated) NA NA NA NA NA NA NA ENOG411E681 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os07g0161700 protein,Os07g0162000 protein,Os07g0161900 protein A3BGT3,Q8H540,Q8H542 A3BGT3_ORYSJ,Q8H540_ORYSJ,Q8H542_ORYSJ Os07g0161700 OsJ_23174 OSNPB_070161700,OJ1714_H10.143 Os07g0162000 OsJ_23178 OSNPB_070162000,OJ1714_H10.139 Os07g0161900 OSNPB_070161900 ENOG411E680 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) Os04g0413100 protein (Fragment) Q0JDC7 Q0JDC7_ORYSJ Os04g0413100 Os04g0413100 OSNPB_040413100 ENOG411E683 P26568,P26569,F4INW2 H11_ARATH,H12_ARATH,F4INW2_ARATH Histone H1.1,Histone H1.2,Winged-helix DNA-binding transcription factor family protein FUNCTION: Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. 28947,28487,21550 Histone H1.1,Histone H1.2,Winged-helix DNA-binding transcription factor family protein nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; nucleosome assembly [GO:0006334],mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; nucleosome assembly [GO:0006334] locus:2033118;,locus:2064332; AT1G06760,AT2G30620 Histone H1 Os07g0184800 protein (Putative histone H1) (cDNA clone:001-029-F03, full insert sequence) (cDNA clone:001-207-F12, full insert sequence) (cDNA clone:J013148D20, full insert sequence) (cDNA clone:J033100F04, full insert sequence),Histone-like protein (Linker histone H1 and H5 family protein, expressed) (Os03g0799000 protein) (cDNA clone:J013072E13, full insert sequence) Q8H4Z0,Q851P9 Q8H4Z0_ORYSJ,Q851P9_ORYSJ OJ1046_F10.127 Os07g0184800 OSNPB_070184800,OSJNBa0052F07.24 LOC_Os03g58470 Os03g0799000 OsJ_12968 OSNPB_030799000 ENOG411E685 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os03g0320500 protein (Os03g0320600 protein) (VQ motif family protein, expressed) (cDNA clone:002-139-F03, full insert sequence) Q10M76 Q10M76_ORYSJ Os03g0320600 LOC_Os03g20440 Os03g0320500 OsJ_10649 OSNPB_030320600 ENOG411E684 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411E687 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: chromosome 4 open reading frame 22 NA NA NA NA NA NA NA ENOG411E686 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: epidermal patterning factor-like protein Os03g0672500 protein (Fragment) A0A0P0W1A2 A0A0P0W1A2_ORYSJ Os03g0672500 OSNPB_030672500 ENOG411E68I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E68H LTPG2 Q9LZH5 LTPG2_ARATH Non-specific lipid transfer protein GPI-anchored 2 (AtLTPG-2) (Protein LTP-GPI-ANCHORED 2) (Xylogen-like protein 5) (AtXYP5) DISRUPTION PHENOTYPE: Reduced cuticular wax load on the stem surface and in silique walls, with altered cuticular lipid composition (especially C29 alkane) associated with diffuse cuticular layer structure. {ECO:0000269|PubMed:22891199}. FUNCTION: Lipid transfer protein that, together with LTPG1, binds to lipids and functions as a component of the cuticular lipid export machinery that performs extensive export of intracellular lipids (e.g. C29 alkane) from epidermal cells to the surface to build the cuticular wax layer and silique walls. {ECO:0000269|PubMed:22891199}. 19175 Non-specific lipid transfer protein GPI-anchored 2 (AtLTPG-2) (Protein LTP-GPI-ANCHORED 2) (Xylogen-like protein 5) (AtXYP5) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; cuticle development [GO:0042335]; lipid transport [GO:0006869] DEVELOPMENTAL STAGE: Strongly expressed in the aerial portions and root tips of seedlings. Present in stem and leaf epidermis, including the trichomes, leaf mesophyll cells, and stem cortex and xylem. In flowers, observed in the upper portion of the styles, anther filament, and veins of the sepals and petals, silique walls and developing seeds. {ECO:0000269|PubMed:22891199}. TISSUE SPECIFICITY: Up-regulated in the epidermis of top stems. Expressed in roots, seedlings, leaves, stems, buds, flower and silique walls. {ECO:0000269|PubMed:16299169, ECO:0000269|PubMed:22891199}. locus:2101044; AT3G43720 lipid-transfer protein-like protein Os05g0489200 protein (Fragment) A0A0P0WNU8 A0A0P0WNU8_ORYSJ Os05g0489200 OSNPB_050489200 ENOG411E68K CIP4,A_TM018A10.16,CIP4.1 Q9FHU3,O23085,Q9C8R5,Q9ZUA8,O65267,A0A1P8B3U7,A0A1P8BDM3,A0A1P8BDL0,A0A1P8B9A5,A0A1P8B9A9,A0A1P8B994,A0A1P8B9C4,B3H4H7,F4JHQ0,F4IRA7,B3H6U0 Q9FHU3_ARATH,O23085_ARATH,Q9C8R5_ARATH,Q9ZUA8_ARATH,O65267_ARATH,A0A1P8B3U7_ARATH,A0A1P8BDM3_ARATH,A0A1P8BDL0_ARATH,A0A1P8B9A5_ARATH,A0A1P8B9A9_ARATH,A0A1P8B994_ARATH,A0A1P8B9C4_ARATH,B3H4H7_ARATH,F4JHQ0_ARATH,F4IRA7_ARATH,B3H6U0_ARATH COP1-interacting protein 4,AT4g00920 protein (A_TM018A10.16 protein) (COP1-interacting protein-like protein) (COP1-interacting protein-related),COP1-interacting protein-like protein (Uncharacterized protein T1P2.17),COP1-interacting protein-like protein (COP1-interacting protein-related) (Uncharacterized protein At2g01800),COP1-interacting protein-like protein (F6N23.4 protein) (Uncharacterized protein AT4g00580),COP1-interacting protein-like protein,COP1-interacting protein 4.1,4'-phosphopantetheinyl transferase domain protein 95381,34559,19458,33535,34913,34282,90018,90517,117322,110718,117580,118120,30904,122519,31064,27415 COP1-interacting protein 4,AT4g00920 protein (A_TM018A10.16 protein) (COP1-interacting protein-like protein) (COP1-interacting protein-related),COP1-interacting protein-like protein (Uncharacterized protein T1P2.17),COP1-interacting protein-like protein (COP1-interacting protein-related) (Uncharacterized protein At2g01800),COP1-interacting protein-like protein (F6N23.4 protein) (Uncharacterized protein AT4g00580),COP1-interacting protein-like protein,COP1-interacting protein 4.1,4'-phosphopantetheinyl transferase domain protein nucleus [GO:0005634]; transcription cofactor activity [GO:0003712]; regulation of photomorphogenesis [GO:0010099],holo-[acyl-carrier-protein] synthase activity [GO:0008897]; lysine biosynthetic process via aminoadipic acid [GO:0019878] locus:2166213;,locus:2134648;,locus:2198274;,locus:2065445;,locus:2127053;,locus:2134653;,locus:2058877; AT5G37190,AT4G00920,AT1G30060,AT2G01800,AT4G00580,AT4G00930,AT2G02770 NA NA NA NA NA NA NA NA ENOG411E68J Q9FLQ0 STGL2_ARATH Stigma-specific STIG1-like protein 2 17917 Stigma-specific STIG1-like protein 2 locus:2161605; AT5G55110 Stigma-specific Stig1 family protein NA NA NA NA NA NA NA ENOG411E68M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1278 ECA1 protein (Expressed protein) (Os11g0168000 protein) (cDNA clone:001-102-G11, full insert sequence) Q53JF8 Q53JF8_ORYSJ Os11g0168000 LOC_Os11g06730 Os11g0168000 OSNPB_110168000 ENOG411E68N ATCOX19-2,COX19-2,COX19-1 Q9C9L6,A0A1P8ANA0,F4IEX1 Q9C9L6_ARATH,A0A1P8ANA0_ARATH,F4IEX1_ARATH At1g66590 (At1g69750) (Cytochrome c oxidase 19-1) (Cytochrome c oxidase 19-2) (Uncharacterized protein At1g66590/T12I7_4) (Uncharacterized protein T6C23.5),Cytochrome c oxidase 19-2,Cytochrome c oxidase 19-1 10935,7942,12735 At1g66590 (At1g69750) (Cytochrome c oxidase 19-1) (Cytochrome c oxidase 19-2) (Uncharacterized protein At1g66590/T12I7_4) (Uncharacterized protein T6C23.5),Cytochrome c oxidase 19-2,Cytochrome c oxidase 19-1 mitochondrial intermembrane space [GO:0005758]; aerobic respiration [GO:0009060]; mitochondrial respiratory chain complex IV assembly [GO:0033617] locus:2205030;,locus:2195160; AT1G66590AT1G69750;,AT1G66590 cytochrome c oxidase assembly protein NA NA NA NA NA NA NA ENOG411E68A F27M3_4 Q93W30,Q9SS61,Q9C504,F4JF33,F4JF32 Q93W30_ARATH,Q9SS61_ARATH,Q9C504_ARATH,F4JF33_ARATH,F4JF32_ARATH Expressed protein (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein At2g35605) (Uncharacterized protein At2g35605/T20F21.29),At3g03590 (SWIB/MDM2 domain superfamily protein) (T12J13.13 protein) (Uncharacterized protein At3g03590/T12J13_13),At1g31760 (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein F27M3_4) (Uncharacterized protein F5M6.23),SWIB complex BAF60b domain-containing protein 11951,15313,12296,20291,25419 Expressed protein (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein At2g35605) (Uncharacterized protein At2g35605/T20F21.29),At3g03590 (SWIB/MDM2 domain superfamily protein) (T12J13.13 protein) (Uncharacterized protein At3g03590/T12J13_13),At1g31760 (SWIB/MDM2 domain superfamily protein) (Uncharacterized protein F27M3_4) (Uncharacterized protein F5M6.23),SWIB complex BAF60b domain-containing protein locus:505006294;,locus:2096404;,locus:2028671;,locus:2114465; AT2G35605,AT3G03590,AT1G31760,AT3G48600 domain-containing protein Os02g0130000 protein (Putative SWIb domain-containing protein) (cDNA clone:002-103-H01, full insert sequence) Q6Z6Y2 Q6Z6Y2_ORYSJ Os02g0130000 Os02g0130000 OJ1007_D04.1 OsJ_05241 OSNPB_020130000 P0576F08.32 ENOG411E68C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os12g0416800 protein) Q2QSV5 Q2QSV5_ORYSJ LOC_Os12g22800 Os12g0416800 OSNPB_120416800 ENOG411E68B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E68E PRA1G2 Q9FH16 PR1G2_ARATH PRA1 family protein G2 (AtPRA1.G2) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 20532 PRA1 family protein G2 (AtPRA1.G2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in roots and trichomes. {ECO:0000269|PubMed:18583532}. locus:2156450; AT5G56230 prenylated rab acceptor NA NA NA NA NA NA NA ENOG411E68D RPS25B,RPS25A,RPS25D,RPS25E Q9SIK2,Q9SIW5,Q8GYL5,Q9T029,B3H4B6,F4IHJ8 RS252_ARATH,RS251_ARATH,RS253_ARATH,RS254_ARATH,B3H4B6_ARATH,F4IHJ8_ARATH 40S ribosomal protein S25-2,40S ribosomal protein S25-1,40S ribosomal protein S25-3,40S ribosomal protein S25-4,Ribosomal protein S25 family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 12069,12126,12018,12053,11925,11941 40S ribosomal protein S25-2,40S ribosomal protein S25-1,40S ribosomal protein S25-3,40S ribosomal protein S25-4,Ribosomal protein S25 family protein cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],ribosome [GO:0005840],cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256] locus:2049369;,locus:505006559;,locus:2136348; AT2G21580,AT2G16360,AT4G34555,AT4G39200 40s ribosomal protein 40S ribosomal protein S25, putative, expressed (Os11g0153800 protein) (S25 ribosomal protein) (cDNA clone:001-018-C09, full insert sequence),Os09g0568800 protein (Putative 40S ribosomal protein 25S) (cDNA clone:001-024-E11, full insert sequence),Os08g0559200 protein (Putative 40S ribosomal protein S25 (RPS25B)) (cDNA clone:001-030-B04, full insert sequence) (cDNA clone:J013120F23, full insert sequence) Q53QG2,Q652P8,Q6YZI2 Q53QG2_ORYSJ,Q652P8_ORYSJ,Q6YZI2_ORYSJ LOC_Os11g05562 Os11g0153800 OSNPB_110153800,Os09g0568800 Os09g0568800 OJ1003_C09.15 OSNPB_090568800,Os08g0559200 Os08g0559200 OSNPB_080559200 P0562A06.14 ENOG411E68G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E68F NOI O22633,F4K693,F4K692 O22633_ARATH,F4K693_ARATH,F4K692_ARATH NOI protein (NOI protein, nitrate-induced) (Putative NOI protein, nitrate-induced) (Putative nitrate-induced NOI protein) (RPM1-interacting protein 4 (RIN4) family protein),RPM1-interacting protein 4 (RIN4) family protein 8343,12221,14345 NOI protein (NOI protein, nitrate-induced) (Putative NOI protein, nitrate-induced) (Putative nitrate-induced NOI protein) (RPM1-interacting protein 4 (RIN4) family protein),RPM1-interacting protein 4 (RIN4) family protein plasma membrane [GO:0005886] locus:2176620; AT5G55850 RPM1-interacting protein NA NA NA NA NA NA NA ENOG411E68Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Chromosome 9 open reading frame 156 NA NA NA NA NA NA NA ENOG411E68X Q8S8A5,A0A1P8B0X8 Q8S8A5_ARATH,A0A1P8B0X8_ARATH Expressed protein,Uncharacterized protein 26646,24785 Expressed protein,Uncharacterized protein locus:505006244; AT2G14095 NA NA NA NA NA NA NA NA ENOG411E68Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os03g0811850 protein A0A0P0W585 A0A0P0W585_ORYSJ Os03g0811850 OSNPB_030811850 ENOG411E68Q Q9SHU9 Q9SHU9_ARATH Expressed protein (PRKR-interacting protein) (Uncharacterized protein At2g15270) 22340 Expressed protein (PRKR-interacting protein) (Uncharacterized protein At2g15270) nucleolus [GO:0005730]; double-stranded RNA binding [GO:0003725]; protein kinase binding [GO:0019901]; protein kinase inhibitor activity [GO:0004860]; negative regulation of protein kinase activity [GO:0006469] locus:2049088; AT2G15270 Protein of unknown function (DUF1168) Os09g0104300 protein (cDNA clone:J023139J24, full insert sequence) Q69KV3 Q69KV3_ORYSJ Os09g0104300 OsJ_28350 OSJNBa0006G10.11 OSNPB_090104300 P0584D02.3 ENOG411E68P RALFL34 Q9FHA6 RLF34_ARATH Protein RALF-like 34 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 14729 Protein RALF-like 34 apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:12611624}. locus:2155553; AT5G67070 Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411E68S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: oleoyl-ACP hydrolase NA NA NA NA NA NA NA ENOG411E68R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 9 (OsTIFY9) (Jasmonate ZIM domain-containing protein 5) (OsJAZ5) (OsJAZ11),Os01g0925900 protein (p0482D04.10 protein) Q7XV97,Q8S1Y4 TIF9_ORYSJ,Q8S1Y4_ORYSJ TIFY9 JAZ5 Os04g0395800 OsJ_14628 OSJNBb0039F02.2,P0482D04.10 Os01g0925900 OSJNBa0093F16.11 OSNPB_010925900 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411E68T Q6DST1 Y1465_ARATH Late embryogenesis abundant protein At1g64065 24282 Late embryogenesis abundant protein At1g64065 integral component of membrane [GO:0016021] locus:1006230721; AT1G64065 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E68W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dnaJ homolog subfamily C member 2-like NA NA NA NA NA NA NA ENOG411E68V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os06g0144400 protein A0A0P0WSZ2 A0A0P0WSZ2_ORYSJ Os06g0144400 OSNPB_060144400 ENOG411DS47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein Os04g0514600 protein A0A0P0WCD7 A0A0P0WCD7_ORYSJ Os04g0514600 OSNPB_040514600 ENOG411DS46 RECQL5 Q0WVW7,A0A1P8AN95 RQL5_ARATH,A0A1P8AN95_ARATH ATP-dependent DNA helicase Q-like 5 (EC 3.6.4.12) (RecQ-like protein 5) (AtRecQ5) (AtRecQl5),DEAD/DEAH box RNA helicase family protein FUNCTION: 3'-5' DNA helicase that may play a role in the repair of DNA. {ECO:0000250}. 3.6.4.12 100755,98483 ATP-dependent DNA helicase Q-like 5 (EC 3.6.4.12) (RecQ-like protein 5) (AtRecQ5) (AtRecQl5),DEAD/DEAH box RNA helicase family protein chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; base-excision repair [GO:0006284]; cellular response to water deprivation [GO:0042631]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724],ATP binding [GO:0005524]; ATP-dependent helicase activity [GO:0008026]; nucleic acid binding [GO:0003676]; DNA recombination [GO:0006310] TISSUE SPECIFICITY: Mostly expressed in roots, seedlings, shoots, shoot apical mersitem, flowers, and siliques. {ECO:0000269|PubMed:12856935}. locus:2029799; AT1G27880 ATP-dependent DNA helicase Os04g0486800 protein B9FFT7 B9FFT7_ORYSJ Os04g0486800 OsJ_15254 OSNPB_040486800 ENOG411DS45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411DS44 Q9SVS0,A0A1P8B7C4 PUS6_ARATH,A0A1P8B7C4_ARATH RNA pseudouridine synthase 6, chloroplastic (EC 5.4.99.-) (RNA pseudouridylate synthase 6) (RNA-uridine isomerase 6),Pseudouridine synthase family protein ARA:AT4G21770-MONOMER; 5.4.99.- 52938,44222 RNA pseudouridine synthase 6, chloroplastic (EC 5.4.99.-) (RNA pseudouridylate synthase 6) (RNA-uridine isomerase 6),Pseudouridine synthase family protein chloroplast [GO:0009507]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; cytidine metabolic process [GO:0046087]; cytosine metabolic process [GO:0019858]; pseudouridine synthesis [GO:0001522]; pyrimidine-containing compound salvage [GO:0008655]; RNA modification [GO:0009451],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522] locus:2119073; AT4G21770 RNA pseudourine synthase 6 RNA pseudouridine synthase 6, chloroplastic (EC 5.4.99.-) (RNA pseudouridylate synthase 6) (RNA-uridine isomerase 6),Os07g0660400 protein A3BN26,A0A0P0XAD5 PUS6_ORYSJ,A0A0P0XAD5_ORYSJ Os07g0660400 LOC_Os07g46600 OsJ_024448 P0496C02.118,Os07g0660400 OSNPB_070660400 ENOG411DS43 TBL26,TBL24,TBL25,TBL23 O04621,Q8H1R3,Q84JH9,O82509 TBL26_ARATH,TBL24_ARATH,TBL25_ARATH,TBL23_ARATH Protein trichome birefringence-like 26,Protein trichome birefringence-like 24,Protein trichome birefringence-like 25,Protein trichome birefringence-like 23 FUNCTION: May be involved in the O-acetylation of mannan. {ECO:0000269|PubMed:20657172, ECO:0000269|PubMed:22086088}.,FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 50687,49568,52501,49178 Protein trichome birefringence-like 26,Protein trichome birefringence-like 24,Protein trichome birefringence-like 25,Protein trichome birefringence-like 23 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2125048;,locus:2128489;,locus:2035342;,locus:2136113; AT4G01080,AT4G23790,AT1G01430,AT4G11090 Pfam:DUF231 Leaf senescence protein-like (Os06g0524400 protein) (cDNA clone:002-120-F10, full insert sequence),Os05g0214900 protein Q654T8,Q6I5B4 Q654T8_ORYSJ,Q6I5B4_ORYSJ Os06g0524400 OJ1616_B03.23 OsJ_21529 OSNPB_060524400,Os05g0214900 OSJNBb0067H15.17 OSNPB_050214900 ENOG411DS42 SLAH2 Q9ASQ7,A0A1P8B3D9,A0A1P8B3E4 SLAH2_ARATH,A0A1P8B3D9_ARATH,A0A1P8B3E4_ARATH S-type anion channel SLAH2 (SLAC1-homolog protein 2),SLAC1 homologue 2 FUNCTION: Slow, weak voltage-dependent S-type anion efflux channel involved in maintenance of anion homeostasis. {ECO:0000269|PubMed:18305482}. 58820,44877,41623 S-type anion channel SLAH2 (SLAC1-homolog protein 2),SLAC1 homologue 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; voltage-gated anion channel activity [GO:0008308]; cellular ion homeostasis [GO:0006873],cell [GO:0005623]; integral component of membrane [GO:0016021]; voltage-gated anion channel activity [GO:0008308]; cellular ion homeostasis [GO:0006873] TISSUE SPECIFICITY: Expressed in lateral root primordia and tap root tips. {ECO:0000269|PubMed:18305482}. locus:2132987; AT4G27970 Pfam:C4dic_mal_tran Os11g0274300 protein,Os05g0584900 protein A0A0P0Y177,A0A0N7KLB6 A0A0P0Y177_ORYSJ,A0A0N7KLB6_ORYSJ Os11g0274300 OSNPB_110274300,Os05g0584900 OSNPB_050584900 ENOG411DS41 DRB5 Q8GY79 DRB5_ARATH Double-stranded RNA-binding protein 5 (dsRNA-binding protein 5) (AtDRB5) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18625233}. FUNCTION: Binds double-stranded RNA. May be involved in RNA-mediated silencing. {ECO:0000269|PubMed:15821876}. 43635 Double-stranded RNA-binding protein 5 (dsRNA-binding protein 5) (AtDRB5) double-stranded RNA binding [GO:0003725] TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM). {ECO:0000269|PubMed:18625233}. locus:2163016; AT5G41070 double-stranded RNA-binding protein Double-stranded RNA-binding protein 2 (dsRNA-binding protein 2) (dsRNA-binding protein 3) (OsDRB3),Os05g0150400 protein (Fragment) Q0DKP4,A0A0P0WIA8 DRB2_ORYSJ,A0A0P0WIA8_ORYSJ DRB2 DRB3 Os05g0150400 LOC_Os05g05790 P0001A07.3,Os05g0150400 OSNPB_050150400 FUNCTION: Binds double-stranded RNA. {ECO:0000250}. ENOG411DS40 NUDT19 Q94A82 NUD19_ARATH Nudix hydrolase 19, chloroplastic (AtNUDT19) (EC 3.6.1.22) (NADH pyrophosphatase NUDT19) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Has a high affinity for NADPH compared with that for NADH. ARA:AT5G20070-MONOMER; R-ATH-499943; 3.6.1.22 48347 Nudix hydrolase 19, chloroplastic (AtNUDT19) (EC 3.6.1.22) (NADH pyrophosphatase NUDT19) chloroplast [GO:0009507]; cytosol [GO:0005829]; metal ion binding [GO:0046872]; NAD+ diphosphatase activity [GO:0000210] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2147665; AT5G20070 Nudix hydrolase MutT/nudix protein-like (Os06g0141100 protein) (Os06g0141166 protein) Q5VSC2 Q5VSC2_ORYSJ Os06g0141166 Os06g0141100 OSNPB_060141166 P0535G04.4 ENOG411DS49 Q9M143,F4JI00 Q9M143_ARATH,F4JI00_ARATH Putative RING zinc finger protein (RING/U-box superfamily protein),Uncharacterized protein 56519,13829 Putative RING zinc finger protein (RING/U-box superfamily protein),Uncharacterized protein locus:2125088;,locus:504955487; AT4G01270,AT4G01245 zinc finger Os08g0151700 protein (Putative potyviral helper component protease-interacting protein 1) (cDNA clone:J033010L07, full insert sequence) Q7EYI0 Q7EYI0_ORYSJ OJ1349_D05.105 P0443G08.137 Os08g0151700 OSNPB_080151700 ENOG411DS48 B6EUB3,A0A1P8BDX9,B3H5K3,F4JYL8 B6EUB3_ARATH,A0A1P8BDX9_ARATH,B3H5K3_ARATH,F4JYL8_ARATH Binding protein R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; 181210,170881,181452,181338 Binding protein chloroplast [GO:0009507]; chromatin [GO:0000785]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; DNA repair [GO:0006281]; microsporogenesis [GO:0009556]; mitotic sister chromatid cohesion [GO:0007064] locus:2169058; AT5G47690 Sister chromatid cohesion protein PDS5 Os06g0286351 protein (Putative Spo76 protein) (cDNA clone:J023074F05, full insert sequence),Os06g0286351 protein (Fragment),Os06g0286351 protein Q5VMT5,A0A0P0WVA0,A0A0P0WVN4,A0A0N7KLY1 Q5VMT5_ORYSJ,A0A0P0WVA0_ORYSJ,A0A0P0WVN4_ORYSJ,A0A0N7KLY1_ORYSJ Os06g0286351 OSNPB_060286351 P0502B12.54,Os06g0286351 OSNPB_060286351 ENOG411DS4G RPS4B,RPS4D,RPS4A P49204,Q8VYK6,Q93VH9,F4K5C7,F4IMI7 RS42_ARATH,RS43_ARATH,RS41_ARATH,F4K5C7_ARATH,F4IMI7_ARATH 40S ribosomal protein S4-2,40S ribosomal protein S4-3,40S ribosomal protein S4-1,40S ribosomal protein S4,Ribosomal protein S4 (RPS4A) family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 29874,29816,29803,27707,21405 40S ribosomal protein S4-2,40S ribosomal protein S4-3,40S ribosomal protein S4-1,40S ribosomal protein S4,Ribosomal protein S4 (RPS4A) family protein cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2169339;,locus:2171198;,locus:2827612; AT5G07090,AT5G58420,AT2G17360 40S ribosomal protein 40S ribosomal protein S4 (SCAR protein SS620),40S ribosomal protein S4 P49398,Q0DIR7,Q5ZBX1 RS4_ORYSJ,Q0DIR7_ORYSJ,Q5ZBX1_ORYSJ RPS4 SS620 Os02g0105900 LOC_Os02g01560 OJ1359_D06.12,Os05g0368300 Os05g0368300 OSNPB_050368300,Os01g0358400 Os01g0358400 OsJ_01737 OSNPB_010358400 P0514H03.14 ENOG411DS4F F4P12_340 Q9FX62,Q8RWN3,Q9LFF7,A0A1P8ASP4,A8MR79,F4HQR9 Q9FX62_ARATH,Q8RWN3_ARATH,Q9LFF7_ARATH,A0A1P8ASP4_ARATH,A8MR79_ARATH,F4HQR9_ARATH Protein kinase superfamily protein (Uncharacterized protein T6J4.10),Protein kinase superfamily protein (Protein kinase-like protein),Protein kinase superfamily protein 87180,107988,73097,95746,77395,90372 Protein kinase superfamily protein (Uncharacterized protein T6J4.10),Protein kinase superfamily protein (Protein kinase-like protein),Protein kinase superfamily protein ATP binding [GO:0005524]; protein kinase activity [GO:0004672],nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein phosphorylation [GO:0006468],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein phosphorylation [GO:0006468] locus:2087347;,locus:2084086;,locus:2009902; AT1G13350,AT3G25840,AT3G53640 S_TKc Os12g0640800 protein (Fragment),Os03g0710100 protein Q0ILJ9,A0A0P0W2I1 Q0ILJ9_ORYSJ,A0A0P0W2I1_ORYSJ Os12g0640800 Os12g0640800 OSNPB_120640800,Os03g0710100 OSNPB_030710100 ENOG411DS4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0167700 protein A0A0P0UYN3 A0A0P0UYN3_ORYSJ Os01g0167700 OSNPB_010167700 ENOG411DS4D DTC Q9C5M0 DTC_ARATH Mitochondrial dicarboxylate/tricarboxylate transporter DTC (Dicarboxylate/tricarboxylate carrier) FUNCTION: Catalyzes the transport of dicarboxylates, such as oxoglutarate, oxaloacetate, malate, and succinate, and of tricarboxylates, such as citrate, isocitrate, cis-aconitate, and trans-aconitate by a counter-exchange mechanism across the inner mitochondrial membrane. Substrate preference in reconstituted proteoliposomes is oxaloacetate > malonate > malate > maleate > succinate > oxoglutarate > citrate > trans-aconitate > cis-aconitate > sulfate > isocitrate. May be important for plant metabolic functions requiring organic acid flux to or from the mitochondria, such as nitrogen assimilation, export of reducing equivalents from the mitochondria, and fatty acid elongation. {ECO:0000269|PubMed:11978797}. R-ATH-70263; 31912 Mitochondrial dicarboxylate/tricarboxylate transporter DTC (Dicarboxylate/tricarboxylate carrier) cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; dicarboxylic acid transmembrane transporter activity [GO:0005310]; oxoglutarate:malate antiporter activity [GO:0015367]; tricarboxylic acid transmembrane transporter activity [GO:0015142]; dicarboxylic acid transport [GO:0006835]; mitochondrial transport [GO:0006839]; tricarboxylic acid transmembrane transport [GO:0035674] TISSUE SPECIFICITY: Highly expressed in flower buds and at lower levels in roots, leaves and stems. {ECO:0000269|PubMed:11978797}. locus:2183254; AT5G19760 Mitochondrial 2-oxoglutarate malate carrier Os05g0208000 protein (Fragment) A0A0P0WJ70 A0A0P0WJ70_ORYSJ Os05g0208000 OSNPB_050208000 ENOG411DS4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0166000 protein,Os04g0166000 protein (Fragment),Os04g0201000 protein,Os04g0330700 protein,Os04g0165900 protein (Fragment) Q0JF37,A0A0P0W789,A0A0P0W7R3,A0A0P0W8W5,A0A0P0W6U3 Q0JF37_ORYSJ,A0A0P0W789_ORYSJ,A0A0P0W7R3_ORYSJ,A0A0P0W8W5_ORYSJ,A0A0P0W6U3_ORYSJ Os04g0166000 Os04g0166000 OSNPB_040166000,Os04g0166000 OSNPB_040166000,Os04g0201000 OSNPB_040201000,Os04g0330700 OSNPB_040330700,Os04g0165900 OSNPB_040165900 ENOG411DS4N ARC6 Q9FIG9,A0A1P8BCR9 ARC6_ARATH,A0A1P8BCR9_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic,Chaperone DnaJ-domain superfamily protein DISRUPTION PHENOTYPE: Defective in proplastid and plastid division, with only one or two grossly enlarged plastids per cell, sometimes exhibiting alteration in stromule length and frequency in non-green tissues (e.g. increase in the frequency of stromules in nearly all cells). Abnormal subplastidial localization of the key plastid division proteins FTSZ1 and FTSZ2 (numerous short and disorganized FtsZ filament fragments). Root cells statoliths, chloroplasts, and other plastids are also abnormally large. Impaired gravitropism of inflorescence stems and hypocotyls, but not of roots. Several mesophyll and stomatal guard cells contain chlorophyll-free plastids, probably missing chloroplastic DNA. {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:11975738, ECO:0000269|PubMed:12232400, ECO:0000269|PubMed:12897262, ECO:0000269|PubMed:18764889, ECO:0000269|PubMed:19318374, ECO:0000269|PubMed:8537433, ECO:0000269|PubMed:9489024}. FUNCTION: Component of the plastid division machinery. Involved in the initiation of proplastid and plastid division (including chloroplasts, statoliths and leukoplasts). Promotes the assembly and/or stabilization of the plastid-dividing FtsZ ring, functioning as an antagonistic regulator of FtsZ dynamics against CDP1. Relays plastid division site position between stroma and outer surface via interactions with the stromal FtsZ ring and the outer membrane PDV2 that recruits cytoplasmic ARC5 ring. Required for plastid equatorial positioning of PDV2 and ARC5. May contribute to gravitropism in stems and hypocotyls. Seems to influence stromule (stroma-filled tubular extensions of the plastid envelope membrane) length and frequency. {ECO:0000269|PubMed:10417716, ECO:0000269|PubMed:11975738, ECO:0000269|PubMed:12232400, ECO:0000269|PubMed:12897262, ECO:0000269|PubMed:18764889, ECO:0000269|PubMed:18812496, ECO:0000269|PubMed:8537433, ECO:0000269|PubMed:9489024}. 88260,78062 Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic,Chaperone DnaJ-domain superfamily protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of chloroplast inner membrane [GO:0031357]; plastid [GO:0009536]; protein self-association [GO:0043621]; chloroplast fission [GO:0010020]; chloroplast organization [GO:0009658] locus:2162341; AT5G42480 Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 Os02g0122400 protein B9F267 B9F267_ORYSJ Os02g0122400 OsJ_05178 OSNPB_020122400 ENOG411DS4M VCL1 Q93VQ0 VCL1_ARATH Protein VACUOLELESS1 (Vacuolar protein sorting-associated protein 16 homolog) DISRUPTION PHENOTYPE: Absence of vacuoles in the embryo and accumulation of small vesicles and autophagosomes. Embryo lethality at late torpedo stage. {ECO:0000269|PubMed:11702788}. Embryo defective-C. Somerville-2001 FUNCTION: Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles. Important for the function of both male and female gametophytes, but is not essential for the germination and development of pollen. {ECO:0000269|PubMed:11702788, ECO:0000269|PubMed:14988481}. 96632 Protein VACUOLELESS1 (Vacuolar protein sorting-associated protein 16 homolog) endosome [GO:0005768]; HOPS complex [GO:0030897]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; plant-type vacuole membrane [GO:0009705]; protein complex [GO:0043234]; actin binding [GO:0003779]; endosomal transport [GO:0016197]; intracellular protein transport [GO:0006886]; negative regulation of embryonic development [GO:0045992]; regulation of SNARE complex assembly [GO:0035542]; regulation of vacuole fusion, non-autophagic [GO:0032889]; vacuole organization [GO:0007033]; vesicle fusion with vacuole [GO:0051469] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:11702788}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques, flowers and mature pollen. {ECO:0000269|PubMed:11702788, ECO:0000269|PubMed:12589039, ECO:0000269|PubMed:14988481}. locus:2065674; AT2G38020 vacuolar protein sorting-associated protein 16 Os01g0666800 protein A0A0P0V678 A0A0P0V678_ORYSJ Os01g0666800 OSNPB_010666800 ENOG411DS4K FLS2 Q9FL28 FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 (EC 2.7.11.1) (Protein FLAGELLIN-SENSING 2) (Protein FLAGELLIN-SENSITIVE 2) Mutant seedlings treated with 10;M flg22 peptide (strong growth inhibitor) display shoot and root growth similar to that of wildtype Ler.,The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance.,Whereas wildtype plants pre-treated with flg22 displayed a decrease in Pseudomonas syringae pv. tomato DC3000 bacterial growth the baterial grew at the same rate in the mutant whether it was pre-treated or not.,The flg22 peptide failed to induce the closure of stomata in epidermal peels of the mutant.,Live E. coli O157:H7 bacteria were able to induce stomatal closure in mutant epidermal peels. Resistant to bacterial flagella protein-T. Boller-2000 FUNCTION: Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 or to the phosphatase hopD2 from Pseudomonas syringae blocks the downstream plant immune response. {ECO:0000269|PubMed:10911994, ECO:0000269|PubMed:11340188, ECO:0000269|PubMed:11875555, ECO:0000269|PubMed:15085136, ECO:0000269|PubMed:16377758, ECO:0000269|PubMed:24625928, ECO:0000269|Ref.11}. MISCELLANEOUS: After flg22-binding, forms instantaneously a heteromeric complex with BAK1 and is transphosphorylated within 15 seconds. After activation, the receptor is internalized by endocytosis and subject to degradation. 2.7.11.1 128824 LRR receptor-like serine/threonine-protein kinase FLS2 (EC 2.7.11.1) (Protein FLAGELLIN-SENSING 2) (Protein FLAGELLIN-SENSITIVE 2) endosome [GO:0005768]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; detection of bacterium [GO:0016045]; receptor-mediated endocytosis [GO:0006898]; regulation of anion channel activity [GO:0010359] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:10911994}. locus:2170483; AT5G46330 LRR receptor-like serine threonine-protein kinase LRR receptor-like serine/threonine-protein kinase FLS2 (EC 2.7.11.1) (Protein FLAGELLIN-SENSING 2 homolog) (OsFLS2) (Protein FLAGELLIN-SENSITIVE 2 homolog) Q0JA29 FLS2_ORYSJ FLS2 Os04g0618700 LOC_Os04g52780 OsJ_16186 FUNCTION: Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Recognizes flg22 from Pseudomonas aeruginosa and Acidovorax avenae. flg22 is a peptide derived from the bacterial flagellin N-terminus sequence (PubMed:18986259, PubMed:25617720). Does not recognize flg22 from Xanthomonas oryzae pv. oryzae (Xoo) or Xanthomonas oryzae pv. oryzicola (Xoc) (PubMed:25617720). {ECO:0000269|PubMed:18986259, ECO:0000269|PubMed:25617720}. ENOG411DS4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os09g0434500 protein (Putative transcription factor EREBP1) (cDNA clone:001-038-B05, full insert sequence) (cDNA clone:006-307-A07, full insert sequence) (cDNA clone:J023008G03, full insert sequence) Q69PH3 Q69PH3_ORYSJ Os09g0434500 OJ1081_G10.25 OsJ_29481 OSNPB_090434500 ENOG411DS4I PGDH3,PGDH2,PGDH1 Q9LT69,O04130,O49485 SERA3_ARATH,SERA2_ARATH,SERA1_ARATH D-3-phosphoglycerate dehydrogenase 3, chloroplastic (EC 1.1.1.95),D-3-phosphoglycerate dehydrogenase 2, chloroplastic (PGDH) (EC 1.1.1.95),D-3-phosphoglycerate dehydrogenase 1, chloroplastic (EC 1.1.1.95) (Protein EMBRYO SAC DEVELOPMENT ARREST 9) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:24058165}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794}.,DISRUPTION PHENOTYPE: Embryo lethal when homozygous. {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794}. FUNCTION: Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB). {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794}.,FUNCTION: Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB). {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794, ECO:0000269|PubMed:9867856}.,FUNCTION: Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB). Required for mature pollen development. {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794}. PATHWAY: Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 1/3. ARA:AT3G19480-MONOMER;,ARA:AT1G17745-MONOMER;MetaCyc:AT1G17745-MONOMER;,ARA:AT4G34200-MONOMER; R-ATH-977347; 1.1.1.95 62122,66454,63325 D-3-phosphoglycerate dehydrogenase 3, chloroplastic (EC 1.1.1.95),D-3-phosphoglycerate dehydrogenase 2, chloroplastic (PGDH) (EC 1.1.1.95),D-3-phosphoglycerate dehydrogenase 1, chloroplastic (EC 1.1.1.95) (Protein EMBRYO SAC DEVELOPMENT ARREST 9) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; NAD binding [GO:0051287]; phosphoglycerate dehydrogenase activity [GO:0004617]; L-serine biosynthetic process [GO:0006564],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; nucleus [GO:0005634]; NAD binding [GO:0051287]; phosphoglycerate dehydrogenase activity [GO:0004617]; L-serine biosynthetic process [GO:0006564],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; NAD binding [GO:0051287]; phosphoglycerate dehydrogenase activity [GO:0004617]; embryo development ending in seed dormancy [GO:0009793]; L-serine biosynthetic process [GO:0006564]; megagametogenesis [GO:0009561]; pollen development [GO:0009555] TISSUE SPECIFICITY: Expressed in aerial parts. Not detected in roots and meristematic tissue. Expressed in cotyledons, adult leaves, stigma and anther filaments. Detected in the embryo. {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794}.,TISSUE SPECIFICITY: Ubiquitous, but highly expressed in roots and in dark-grown leaf tissues. Expressed in the vasculature, stigma, anther filaments and shoot apical meristem. Not detected in the root meristem or in embryo. {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794, ECO:0000269|PubMed:9867856}.,TISSUE SPECIFICITY: Ubiquitous, but highly expressed in roots. Expressed in vasculature, root and shoot meristems, distal part of cotyledons and leaves, anther, stigma and pollen grains. Detected at the tip of the cotyledons in late embryos. {ECO:0000269|PubMed:24058165, ECO:0000269|PubMed:24368794}. locus:2090649;,locus:505006128;,locus:2124266; AT3G19480,AT1G17745,AT4G34200 D-3-phosphoglycerate dehydrogenase D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95),Os04g0650800 protein (Fragment) Q7XMP6,Q6ZAA5,A0A0P0WFS7,A0A0P0WZL3 Q7XMP6_ORYSJ,Q6ZAA5_ORYSJ,A0A0P0WFS7_ORYSJ,A0A0P0WZL3_ORYSJ Os04g0650800 OSJNBb0059K02.15 OSNPB_040650800,Os08g0447000 OSNPB_080447000 P0409A07.5 P0429B05.26,Os04g0650800 OSNPB_040650800,Os06g0655100 OSNPB_060655100 ENOG411DS4H ELCL,ELC Q9FFY6,Q9LHG8,A0A1I9LRG3,A0A1I9LRG2 ELCL_ARATH,ELC_ARATH,A0A1I9LRG3_ARATH,A0A1I9LRG2_ARATH Protein ELC-like (ESCRT-I complex subunit VPS23 homolog 2) (Protein VACUOLAR PROTEIN SORTING 23B) (Vacuolar protein sorting-associated protein 23 homolog 2),Protein ELC (AtELC) (ESCRT-I complex subunit VPS23 homolog 1) (Protein VACUOLAR PROTEIN SORTING 23A) (Vacuolar protein-sorting-associated protein 23 homolog 1),Ubiquitin-conjugating enzyme/RWD-like protein DISRUPTION PHENOTYPE: Clustered trichomes and multinucleated cells. {ECO:0000269|PubMed:17090720}. About 2% of all trichomes had more than one nucleus. Among the cluster-like trichomes 93% had several nuclei whereas 0.4% of the trichomes with a normal appearance had more than one nucleus.,In the mutant about 2% of the trichomes showed a cluster phenotype. In clusters two stems were usually formed that appeared to separate just above the epidermal surface giving the trichome a moose-horn-like appearance.,The mutant has slightly less branching of trichomes than in wild type.,Epidermal pavement cells are strongly reduced in size.,Increase in the frequency of trichomes with more stems.,Leaf architecture is grossly disturbed.,Many cells contain multiple nuclei and nuclear anomalies.,Synergistic phenotype compared to both single mutants.,The mutant showed cluster-like trichomes lacking additional branches.,The double mutant exhibits an additive trichome phenotype. The cluster frequency and number of nuclei was similar to that in elc single mutants and the number of branches was similar to that in kak single mutants. Clustered trichomes with multiple nuclei-M. Hulskamp-2006 FUNCTION: Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). {ECO:0000250|UniProtKB:Q9LHG8}.,FUNCTION: Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). May control nuclear division through the microtubule cytoskeleton. {ECO:0000269|PubMed:17090720}. 41495,44716,49306,44481 Protein ELC-like (ESCRT-I complex subunit VPS23 homolog 2) (Protein VACUOLAR PROTEIN SORTING 23B) (Vacuolar protein sorting-associated protein 23 homolog 2),Protein ELC (AtELC) (ESCRT-I complex subunit VPS23 homolog 1) (Protein VACUOLAR PROTEIN SORTING 23A) (Vacuolar protein-sorting-associated protein 23 homolog 1),Ubiquitin-conjugating enzyme/RWD-like protein ESCRT I complex [GO:0000813]; late endosome [GO:0005770]; cellular protein modification process [GO:0006464]; protein transport [GO:0015031],early endosome [GO:0005769]; ESCRT I complex [GO:0000813]; late endosome [GO:0005770]; protein complex [GO:0043234]; ubiquitin binding [GO:0043130]; cell division [GO:0051301]; cellular protein modification process [GO:0006464]; protein transport [GO:0015031]; trichome branching [GO:0010091],cellular protein modification process [GO:0006464]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:17090720}. locus:2159113;,locus:2092477; AT5G13860,AT3G12400 protein transport Os02g0833300 protein (Putative human tumor susceptibility gene-like protein) (cDNA clone:J033116E04, full insert sequence) Q6ESB7 Q6ESB7_ORYSJ Os02g0833300 OJ1282_E10.10 OSNPB_020833300 ENOG411DS4V O64651,Q93YW3 O64651_ARATH,Q93YW3_ARATH ARM repeat superfamily protein (At2g45720) (Uncharacterized protein At2g45720),ARM repeat superfamily protein (Uncharacterized protein At1g01830) 59522,61924 ARM repeat superfamily protein (At2g45720) (Uncharacterized protein At2g45720),ARM repeat superfamily protein (Uncharacterized protein At1g01830) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2043709;,locus:2198235; AT2G45720,AT1G01830 armadillo beta-catenin repeat family protein Os03g0116900 protein Q0DVR0 Q0DVR0_ORYSJ Os03g0116900 Os03g0116900 OSNPB_030116900 ENOG411DS4U ATXR5 Q8VZJ1 ATXR5_ARATH Histone-lysine N-methyltransferase ATXR5 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 15) (Trithorax-related protein 5) (TRX-related protein 5) DISRUPTION PHENOTYPE: No visible phenotype. Atxr5 and atxr6 double mutant is smaller than wild-type plants, shows partial decondensation of the chromocenter, decreased H3K27 monomethylation and increased DNA re-replication. {ECO:0000269|PubMed:19503079}. reduced H3K27me1 in vivo; partial heterochromatin decondensation; transcriptional activation of repressed heterochromatic elements Pigment defective embryo-D. Meinke-2011 FUNCTION: Histone methyltransferase that specifically monomethylates 'Lys-37' of histone H3 (H3K27me1). Has much higher activity on nucleosomes containing H3.1 than H3.3. Involved in the formation of constitutive heterochromatin and the silencing of heterochromatic elements. Influences which sets of rRNA gene variants are expressed or silenced. {ECO:0000269|PubMed:19503079, ECO:0000269|PubMed:20631708, ECO:0000269|PubMed:22549957}. MISCELLANEOUS: The binding to histone H3.2 is unaffected by mono-, di, or trimethylation at H3K9, but is strongly reduced by increasing levels of H3K4 methylation. {ECO:0000305|PubMed:20631708}. 2.1.1.43 43034 Histone-lysine N-methyltransferase ATXR5 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 15) (Trithorax-related protein 5) (TRX-related protein 5) chloroplast [GO:0009507]; nucleus [GO:0005634]; histone methyltransferase activity (H3-K27 specific) [GO:0046976]; metal ion binding [GO:0046872]; DNA mediated transformation [GO:0009294]; histone H3-K27 methylation [GO:0070734]; pollen development [GO:0009555]; regulation of cell cycle [GO:0051726]; regulation of DNA replication [GO:0006275] TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers, siliques and developing pollen. Up-regulated in tissues where cell division is active. {ECO:0000269|PubMed:16771839}. locus:2144841; AT5G09790 Histone-lysine n-methyltransferase Os02g0122700 protein A0A0P0VE60 A0A0P0VE60_ORYSJ Os02g0122700 OSNPB_020122700 ENOG411DS4T UGT79B6,UGT79B3,UGT79B2,A3G2XYLT Q9FN26,Q9T081,Q9T080,Q9LVW3 U79B6_ARATH,U79B3_ARATH,U79B2_ARATH,AXYLT_ARATH UDP-glycosyltransferase 79B6 (EC 2.4.1.-),UDP-glycosyltransferase 79B3 (EC 2.4.1.-),UDP-glycosyltransferase 79B2 (EC 2.4.1.-),Anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase (A3G2''XylT) (EC 2.4.2.51) DISRUPTION PHENOTYPE: Strong reduction in anthocyanin accumulation. {ECO:0000269|PubMed:21899608}. FUNCTION: Contributes to the last few anthocyanin biosynthetic steps. Converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1->2)glucoside. Can use 3-O-glucosylated anthocyanidins/flavonols and uridine diphosphate (UDP)-xylose as substrates. {ECO:0000269|PubMed:21899608}. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. ARA:AT5G54010-MONOMER;,ARA:AT4G27570-MONOMER;,ARA:AT4G27560-MONOMER;,ARA:AT5G54060-MONOMER;MetaCyc:MONOMER-18502; 2.4.2.51; 2.4.1.-,2.4.2.51 50831,50360,50615,52048 UDP-glycosyltransferase 79B6 (EC 2.4.1.-),UDP-glycosyltransferase 79B3 (EC 2.4.1.-),UDP-glycosyltransferase 79B2 (EC 2.4.1.-),Anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase (A3G2''XylT) (EC 2.4.2.51) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity [GO:0102580]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-xylosyltransferase activity [GO:0035252]; anthocyanin-containing compound biosynthetic process [GO:0009718]; cellular response to cytokinin stimulus [GO:0071368]; cellular response to jasmonic acid stimulus [GO:0071395]; cyanidin 3-O-glucoside metabolic process [GO:1901038]; D-xylose metabolic process [GO:0042732] locus:2154754;,locus:2137737;,locus:2137722;,locus:2166552; AT5G54010,AT4G27570,AT4G27560,AT5G54060 UDP-glycosyltransferase Flavonol 3-O-glucosyltransferase, putative, expressed (Os11g0457300 protein),Os11g0461200 protein (Fragment),Os11g0457000 protein Q2R4X7,A0A0P0Y2A2,A0A0P0Y2H6 Q2R4X7_ORYSJ,A0A0P0Y2A2_ORYSJ,A0A0P0Y2H6_ORYSJ Os11g0457300 LOC_Os11g26950 Os11g0457300 OSNPB_110457300,Os11g0461200 OSNPB_110461200,Os11g0457000 OSNPB_110457000 ENOG411DS4P PAP16 Q9SR79,A0A1I9LQV7 PPA16_ARATH,A0A1I9LQV7_ARATH Probable inactive purple acid phosphatase 16,Purple acid phosphatase 16 41162,43932 Probable inactive purple acid phosphatase 16,Purple acid phosphatase 16 extracellular region [GO:0005576]; membrane [GO:0016020]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2100058; AT3G10150 Purple acid phosphatase Os01g0941800 protein (Purple acid phosphatase-like) (cDNA clone:002-127-D02, full insert sequence) Q8S9P9 Q8S9P9_ORYSJ P0432C03.25-1 Os01g0941800 OsJ_04723 OSNPB_010941800 ENOG411DS4Z EID1 Q8LEA8 EID1_ARATH Phytochrome A-associated F-box protein (Empfindlicher im dunkelroten Licht protein 1) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Negative regulator of the phyA signaling pathway that shifts the responsiveness of the phyA signaling system associated with hypocotyl elongation from red to far-red wavelength. {ECO:0000269|PubMed:10760243}. MISCELLANEOUS: 'Empfindlicher im dunkelroten licht' means sensitive to far-red light in German. PATHWAY: Protein modification; protein ubiquitination. 37398 Phytochrome A-associated F-box protein (Empfindlicher im dunkelroten Licht protein 1) nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; leaf development [GO:0048366]; photoperiodism, flowering [GO:0048573]; red, far-red light phototransduction [GO:0009585]; regulation of photomorphogenesis [GO:0010099] locus:2133259; AT4G02440 Phytochrome A-associated F-box Os05g0365000 protein Q75IT7 Q75IT7_ORYSJ OSJNBb0111K12.4 Os05g0365000 OSNPB_050365000 P0683B02.9 P0686B10.15 ENOG411DS4Y CER3 Q8H1Z0 CER3_ARATH Protein ECERIFERUM 3 (Protein FACELESS POLLEN 1) (Protein WAX2) (Protein YORE-YORE) DISRUPTION PHENOTYPE: Plants show postgenital fusion between aerial organs and severe male sterility in low-humidity environments. Altered cuticular waxes, but no effect on cutin load and composition. {ECO:0000269|PubMed:12724542, ECO:0000269|PubMed:12974811, ECO:0000269|PubMed:14756310, ECO:0000269|PubMed:17624331}. Dull stems and inflorescences; Reduced male fertility-L. Kunst-2007 FUNCTION: Involved in cuticule membrane and wax production, and in the typhine and sopropollenin biosynthesis of pollen. Core components of a very-long-chain alkane synthesis complex. May be the fatty acid reductase responsible for aldehyde formation. {ECO:0000269|PubMed:12724542, ECO:0000269|PubMed:12974811, ECO:0000269|PubMed:14756310, ECO:0000269|PubMed:22773744}. 72289 Protein ECERIFERUM 3 (Protein FACELESS POLLEN 1) (Protein WAX2) (Protein YORE-YORE) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; alkane biosynthetic process [GO:0043447]; cuticle development [GO:0042335]; cuticle hydrocarbon biosynthetic process [GO:0006723]; lipid biosynthetic process [GO:0008610]; lipid metabolic process [GO:0006629]; pollen sperm cell differentiation [GO:0048235]; wax biosynthetic process [GO:0010025] TISSUE SPECIFICITY: Expressed in siliques, stems, flowers and weakly in leaves. Not detected in pollen, seeds and roots, but expressed in lateral root primordia. Specifically found in the L1 layer of the shoot apical meristem and in developing trichomes. {ECO:0000269|PubMed:12724542, ECO:0000269|PubMed:12974811, ECO:0000269|PubMed:14756310, ECO:0000269|PubMed:21386033}. locus:2174368; AT5G57800 WAX2 C-terminal domain Os09g0426800 protein (Putative Gl1 protein),Os06g0653000 protein (Putative Gl1),Os02g0178800 protein (Putative glossy1 protein) (cDNA clone:J013070P03, full insert sequence),Os02g0178800 protein (Fragment) Q69PA8,Q67WQ7,Q6ETL8,A0A0P0VFI0 Q69PA8_ORYSJ,Q67WQ7_ORYSJ,Q6ETL8_ORYSJ,A0A0P0VFI0_ORYSJ Os09g0426800 OJ1299_A11.27 OSNPB_090426800,Os06g0653000 OsJ_22195 OSJNBa0085J13.13 OSNPB_060653000,Os02g0178800 Os02g0178800 OSNPB_020178800 P0544B02.10,Os02g0178800 OSNPB_020178800 ENOG411DS4X Q2HIU0 Q2HIU0_ARATH At3g15110 (Transmembrane protein) 28612 At3g15110 (Transmembrane protein) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2083676; AT3G15110 Protein of unknown function (DUF3082) Os02g0307800 protein (cDNA clone:001-040-H11, full insert sequence) (cDNA clone:J013002O01, full insert sequence) Q6Z0W7 Q6Z0W7_ORYSJ Os02g0307800 OsJ_06408 OSJNBb0026D20.9 OSNPB_020307800 ENOG411DUCX SBT3.18,UNE17 Q9STQ2,A0A1P8B4U4 SBT3I_ARATH,A0A1P8B4U4_ARATH Subtilisin-like protease SBT3.18 (EC 3.4.21.-) (Subtilase subfamily 3 member 18) (AtSBT3.18),Subtilisin-like serine endopeptidase family protein ARA:AT4G26330-MONOMER; 3.4.21.- 85197,79808 Subtilisin-like protease SBT3.18 (EC 3.4.21.-) (Subtilase subfamily 3 member 18) (AtSBT3.18),Subtilisin-like serine endopeptidase family protein extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252]; double fertilization forming a zygote and endosperm [GO:0009567],serine-type endopeptidase activity [GO:0004252] locus:2136824; AT4G26330 Subtilase family Os03g0158700 protein (Fragment),Os03g0158700 protein Q0DV00,A0A0P0VTL0 Q0DV00_ORYSJ,A0A0P0VTL0_ORYSJ Os03g0158700 OSNPB_030158700 ENOG411DUCY HMGB10 Q9LTT3 HMG10_ARATH High mobility group B protein 10 (Nucleosome/chromatin assembly factor group D 10) FUNCTION: Binds preferentially DNA with A/T-rich content. {ECO:0000250}. 36296 High mobility group B protein 10 (Nucleosome/chromatin assembly factor group D 10) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19053246}. locus:2088160; AT3G13350 high mobility group NA NA NA NA NA NA NA ENOG411DUCZ Q8S9J0 TAUE4_ARATH Sulfite exporter TauE/SafE family protein 4 50256 Sulfite exporter TauE/SafE family protein 4 integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2040605; AT2G36630 Sulfite exporter TauE/SafE Expressed protein (Os03g0726500 protein) (cDNA clone:J023028O14, full insert sequence) Q75GI8 Q75GI8_ORYSJ Os03g0726500 OSJNBb0122C16.14 LOC_Os03g51650 Os03g0726500 OSJNBa0013A09.9 OSNPB_030726500 ENOG411DUCT NPG1 Q8GZN1 NPG1_ARATH Protein NPG1 (NO POLLEN GERMINATION 1) DISRUPTION PHENOTYPE: Normal pollen development, but no pollen germination. {ECO:0000269|PubMed:12928497}. Complete male gametophyte defective-A. Reddy-2003 FUNCTION: Calmodulin-binding protein essential for pollen germination, but not necessary for microsporogenesis or gametogenesis (PubMed:12928497). {ECO:0000269|PubMed:12928497}. 77985 Protein NPG1 (NO POLLEN GERMINATION 1) calmodulin binding [GO:0005516] TISSUE SPECIFICITY: Expressed only in pollen and in pollen tubes. {ECO:0000269|PubMed:12928497}. locus:2053707; AT2G43040 tetratricopeptide repeat Calmodulin-binding protein MPCBP, putative, expressed (Os12g0565300 protein) (cDNA clone:J033071N15, full insert sequence) Q2QNH6 Q2QNH6_ORYSJ Os12g0565300 LOC_Os12g37780 Os12g0565300 OSNPB_120565300 ENOG411DUCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidohydrolase family Amidohydrolase family protein, expressed (Os12g0468600 protein) (cDNA clone:006-202-A01, full insert sequence) (cDNA clone:J023092B14, full insert sequence) Q2QRA2 Q2QRA2_ORYSJ Os12g0468600 LOC_Os12g28270 Os12g0468600 OsJ_36050 OSNPB_120468600 ENOG411DUCV PPC4-2 O81716,Q9SZ53,C0Z2V3 P2C21_ARATH,P2C60_ARATH,C0Z2V3_ARATH Probable protein phosphatase 2C 21 (AtPP2C21) (EC 3.1.3.16) (AtPPC4;2),Probable protein phosphatase 2C 60 (AtPP2C60) (EC 3.1.3.16),AT4G31860 protein (Protein phosphatase 2C family protein) 3.1.3.16 39354,39203,32513 Probable protein phosphatase 2C 21 (AtPP2C21) (EC 3.1.3.16) (AtPPC4;2),Probable protein phosphatase 2C 60 (AtPP2C60) (EC 3.1.3.16),AT4G31860 protein (Protein phosphatase 2C family protein) plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; response to abscisic acid [GO:0009737],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2047344;,locus:2116777; AT2G25070,AT4G31860 phosphatase 2C Probable protein phosphatase 2C 58 (OsPP2C58) (EC 3.1.3.16),Probable protein phosphatase 2C 11 (OsPP2C11) (EC 3.1.3.16),Probable protein phosphatase 2C 70 (OsPP2C70) (EC 3.1.3.16) Q67UP9,Q6ETK3,Q653S3 P2C58_ORYSJ,P2C11_ORYSJ,P2C70_ORYSJ Os06g0651600 LOC_Os06g44210 OsJ_22185 P0453H04.39-1 P0453H04.39-2,Os02g0180000 LOC_Os02g08364 P0544B02.31,Os09g0558000 LOC_Os09g38550 OJ1065_E04.2-1 OJ1065_E04.2-2 OsJ_029126 ENOG411DUCW EDA35 Q9M0V1,A8MR55 Q9M0V1_ARATH,A8MR55_ARATH Cell division cycle protein 123 homolog,Temperature sensing protein-like protein FUNCTION: Required for S phase entry of the cell cycle. {ECO:0000256|PIRNR:PIRNR007807}. 38778,24843 Cell division cycle protein 123 homolog,Temperature sensing protein-like protein cytoplasm [GO:0005737]; cell cycle arrest [GO:0007050]; cell division [GO:0051301]; polar nucleus fusion [GO:0010197]; regulation of translation [GO:0006417],cell cycle [GO:0007049] locus:2115929; AT4G05440 cell division cycle protein NA NA NA NA NA NA NA ENOG411DUCP F4JMQ8,F4JPS4 F4JMQ8_ARATH,F4JPS4_ARATH Calcineurin-like metallo-phosphoesterase superfamily protein 106097,116564 Calcineurin-like metallo-phosphoesterase superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2127148;,locus:2137060; AT4G23000,AT4G11800 Ser Thr protein phosphatase family protein Os07g0106000 protein (cDNA clone:J033024P06, full insert sequence),Os07g0134500 protein (Fragment),Os07g0106000 protein (Fragment),Os07g0140566 protein (Fragment) Q7XAL0,A0A0P0X1Z8,A0A0P0X1R3,A0A0P0X2G3 Q7XAL0_ORYSJ,A0A0P0X1Z8_ORYSJ,A0A0P0X1R3_ORYSJ,A0A0P0X2G3_ORYSJ P0617C02.122-1 B1317D11.117-1 Os07g0106000 OsJ_22800 OSNPB_070106000,Os07g0134500 OSNPB_070134500,Os07g0106000 OSNPB_070106000,Os07g0140566 OSNPB_070140566 ENOG411DUCQ Q9FYC8 Y3482_ARATH BTB/POZ domain-containing protein At3g44820 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 72965 BTB/POZ domain-containing protein At3g44820 protein ubiquitination [GO:0016567] locus:2082132; AT3G44820 BTB POZ domain-containing protein NA NA NA NA NA NA NA ENOG411DUCR MRL1 Q0WLC6 PP349_ARATH Pentatricopeptide repeat-containing protein MRL1, chloroplastic (Protein MATURATION OF RBCL 1) (AtMRL1) DISRUPTION PHENOTYPE: No visible phenotype. RuBisCO content only slightly reduced. {ECO:0000269|PubMed:20097872}. Pigment defective embryo-D. Meinke-2011 FUNCTION: Regulator of the large subunit (LS) of RuBisCO. Involved either in the processing or in the stabilization of the processed transcript, probably by acting as a barrier to the 5'>3' degradation. {ECO:0000269|PubMed:20097872}. 119771 Pentatricopeptide repeat-containing protein MRL1, chloroplastic (Protein MATURATION OF RBCL 1) (AtMRL1) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mRNA stabilization [GO:0048255]; RNA modification [GO:0009451] TISSUE SPECIFICITY: Expressed in stems, leaves and sepals. {ECO:0000269|PubMed:20097872}. locus:2116915; AT4G34830 Pentatricopeptide repeat-containing protein At4g34830 (RAP Annotation release2) Protein prenyltransferase domain containing protein (Os10g0181200 protein) B7EC91 B7EC91_ORYSJ Os10g0181200 OSNPB_100181200 ENOG411DUCS KCS7 Q9C992 KCS7_ARATH 3-ketoacyl-CoA synthase 7 (KCS-7) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 7) (VLCFA condensing enzyme 7) PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT1G71160-MONOMER; 2.3.1.199 51496 3-ketoacyl-CoA synthase 7 (KCS-7) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 7) (VLCFA condensing enzyme 7) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:18465198}. locus:2026331; AT1G71160 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411DUCM Q66GP0,Q9SN21,A0A1P8BEF2,A0A1I9LRW6 Y5738_ARATH,Y3997_ARATH,A0A1P8BEF2_ARATH,A0A1I9LRW6_ARATH BTB/POZ domain-containing protein At5g67385,Putative BTB/POZ domain-containing protein At3g49970,Phototropic-responsive NPH3 family protein FUNCTION: Acts as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (Probable). Involved in disease resistance. Acts as a substrate adapter that recruits CAMTA3/SR1 for ubiquitination and degradation during pathogen infection. Acts as positive regulator of plant defense by removing the defense suppressor CAMTA3/SR1 (PubMed:24528504). {ECO:0000269|PubMed:24528504, ECO:0000305|PubMed:24528504}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 67559,59868,62596,58517 BTB/POZ domain-containing protein At5g67385,Putative BTB/POZ domain-containing protein At3g49970,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:504954965;,locus:2083103; AT5G67385,AT3G49970 BTB POZ domain-containing protein Os03g0206700 protein (Transposon protein, putative, Mutator sub-class, expressed) Q8H069 Q8H069_ORYSJ OSJNBa0014O06.3 Os03g0206700 LOC_Os03g10880 OsJ_09846 OSNPB_030206700 ENOG411DUCN ALE2 Q8RWW0 ALE2_ARATH Receptor-like serine/threonine-protein kinase ALE2 (EC 2.7.11.1) (Protein ABNORMAL LEAF SHAPE 2) DISRUPTION PHENOTYPE: Various epidermal defects, including disorganization of epidermis-related tissues, defects in the leaf cuticle and the fusion of organs. {ECO:0000269|PubMed:17376810}. various epidermal defects including disorganization of epidermis-related tissues defects in the leaf cuticle and the fusion of organs. Malformed leaves; Leaf fusion; Female sterile-Y. Machida-2007 FUNCTION: Required during the differentiation of the protoderm into shoots epidermis and cuticle. {ECO:0000269|PubMed:17376810}. R-ATH-446652; 2.7.11.1 81633 Receptor-like serine/threonine-protein kinase ALE2 (EC 2.7.11.1) (Protein ABNORMAL LEAF SHAPE 2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell differentiation [GO:0030154]; cell surface receptor signaling pathway [GO:0007166]; cuticle development [GO:0042335]; plant organ formation [GO:1905393]; protein autophosphorylation [GO:0046777]; protoderm histogenesis [GO:0010068] locus:2038992; AT2G20300 serine threonine-protein kinase Os02g0815900 protein (Putative receptor protein kinase PERK1),Os04g0509000 protein (Fragment),Os02g0815900 protein (Putative receptor protein kinase PERK1) (cDNA clone:J023010G02, full insert sequence) Q6K6B8,Q0JBU8,Q6K6B7 Q6K6B8_ORYSJ,Q0JBU8_ORYSJ,Q6K6B7_ORYSJ P0643F09.9-1 Os02g0815900 OSNPB_020815900,Os04g0509000 Os04g0509000 OSNPB_040509000,P0643F09.9-2 Os02g0815900 OSNPB_020815900 ENOG411DUCH F4IS90,A0A1P8B118,F4IS89,A0A1P8B127,A0A1P8B117 F4IS90_ARATH,A0A1P8B118_ARATH,F4IS89_ARATH,A0A1P8B127_ARATH,A0A1P8B117_ARATH Alpha/beta-Hydrolases superfamily protein 196051,206649,206294,164782,166944 Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2056891; AT2G03140 Inherit from KOG: Abhydrolase domain containing NA NA NA NA NA NA NA ENOG411DUCI O22944 NTAQ1_ARATH Protein N-terminal glutamine amidohydrolase (EC 3.5.1.122) (Protein NH2-terminal glutamine deamidase) (N-terminal Gln amidase) (Nt(Q)-amidase) FUNCTION: Mediates the side-chain deamidation of N-terminal glutamine residues to glutamate, an important step in N-end rule pathway of protein degradation. Conversion of the resulting N-terminal glutamine to glutamate renders the protein susceptible to arginylation, polyubiquitination and degradation as specified by the N-end rule. Does not act on substrates with internal or C-terminal glutamine and does not act on non-glutamine residues in any position. {ECO:0000250|UniProtKB:Q80WB5}. 3.5.1.122 24972 Protein N-terminal glutamine amidohydrolase (EC 3.5.1.122) (Protein NH2-terminal glutamine deamidase) (N-terminal Gln amidase) (Nt(Q)-amidase) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [GO:0016811] locus:2054381; AT2G41760 Mediates the side-chain deamidation of N-terminal glutamine residues to glutamate an important step in N-end rule pathway of protein degradation. Conversion of the resulting N- terminal glutamine to glutamate renders the protein susceptible to arginylation polyubiquitination and degradation as specified by the N-end rule. Does not act on substrates with internal or C- terminal glutamine and does not act on non-glutamine residues in any position (By similarity) Protein N-terminal glutamine amidohydrolase (EC 3.5.1.122) (Protein NH2-terminal glutamine deamidase) (N-terminal Gln amidase) (Nt(Q)-amidase) Q60E61 NTAQ1_ORYSJ Os05g0387900 LOC_Os05g32190 OsJ_18401 OSJNBa0073E05.15 FUNCTION: Mediates the side-chain deamidation of N-terminal glutamine residues to glutamate, an important step in N-end rule pathway of protein degradation. Conversion of the resulting N-terminal glutamine to glutamate renders the protein susceptible to arginylation, polyubiquitination and degradation as specified by the N-end rule. Does not act on substrates with internal or C-terminal glutamine and does not act on non-glutamine residues in any position. {ECO:0000250|UniProtKB:Q80WB5}. ENOG411DUCJ MES11; ,MES12,MES14,MES11 Q9FW03,Q940H7,Q9FVW3,A0A1I9LRC7 MES11_ARATH,MES12_ARATH,MES14_ARATH,A0A1I9LRC7_ARATH Putative methylesterase 11, chloroplastic (AtMES11) (EC 3.1.1.-),Putative methylesterase 12, chloroplastic (AtMES12) (EC 3.1.1.-),Putative methylesterase 14, chloroplastic (AtMES14) (EC 3.1.1.-),Methyl esterase 11 FUNCTION: Putative methylesterase. ARA:AT3G29770-MONOMER;,ARA:AT4G09900-MONOMER;,ARA:AT1G33990-MONOMER; 3.1.1.- 42663,38930,38855,31285 Putative methylesterase 11, chloroplastic (AtMES11) (EC 3.1.1.-),Putative methylesterase 12, chloroplastic (AtMES12) (EC 3.1.1.-),Putative methylesterase 14, chloroplastic (AtMES14) (EC 3.1.1.-),Methyl esterase 11 chloroplast [GO:0009507]; hydrolase activity [GO:0016787],chloroplast [GO:0009507]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787] locus:2100587;,locus:2140508;,locus:2009011; AT3G29770,AT4G09900,AT1G33990 esterase Os07g0603600 protein (Fragment),Os08g0110000 protein (Putative PIR7A protein) (cDNA clone:J033068G24, full insert sequence) Q0D4U5,Q6ZC62 Q0D4U5_ORYSJ,Q6ZC62_ORYSJ Os07g0603600 Os07g0603600 OSNPB_070603600,Os08g0110000 Os08g0110000 OSNPB_080110000 P0007D08.23 ENOG411DUCK LPD2,LPD1 F4JLP5,A8MS68 PLPD2_ARATH,PLPD1_ARATH Dihydrolipoyl dehydrogenase 2, chloroplastic (ptLPD2) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 2) (Protein LIPOAMIDE DEHYDROGENASE 2) (Pyruvate dehydrogenase complex E3 subunit 2) (E3-2) (PDC-E3 2),Dihydrolipoyl dehydrogenase 1, chloroplastic (ptLPD1) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 1) (Protein LIPOAMIDE DEHYDROGENASE 1) (Pyruvate dehydrogenase complex E3 subunit 1) (E3-1) (PDC-E3 1) DISRUPTION PHENOTYPE: Arsenate hypersensitivity. {ECO:0000269|PubMed:20488895}. Sensitive to arsenate-P. Finnegan-2010 FUNCTION: Lipoamide dehydrogenase is a component of the plastidial pyruvate dehydrogenase complex (PDC). {ECO:0000269|PubMed:11056213}. MISCELLANEOUS: The active site is a redox-active disulfide bond. {ECO:0000250}. 1.8.1.4 60145,66661 Dihydrolipoyl dehydrogenase 2, chloroplastic (ptLPD2) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 2) (Protein LIPOAMIDE DEHYDROGENASE 2) (Pyruvate dehydrogenase complex E3 subunit 2) (E3-2) (PDC-E3 2),Dihydrolipoyl dehydrogenase 1, chloroplastic (ptLPD1) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 1) (Protein LIPOAMIDE DEHYDROGENASE 1) (Pyruvate dehydrogenase complex E3 subunit 1) (E3-1) (PDC-E3 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; dihydrolipoyl dehydrogenase activity [GO:0004148]; flavin adenine dinucleotide binding [GO:0050660]; cell redox homeostasis [GO:0045454]; response to arsenic-containing substance [GO:0046685],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; nucleolus [GO:0005730]; dihydrolipoyl dehydrogenase activity [GO:0004148]; flavin adenine dinucleotide binding [GO:0050660]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; cell redox homeostasis [GO:0045454]; response to arsenic-containing substance [GO:0046685] TISSUE SPECIFICITY: Expressed mainly in flower buds and immature siliques, and to a lesser extent in flowers. {ECO:0000269|PubMed:11056213}. locus:505006477;,locus:2086177; AT4G16155,AT3G16950 dihydrolipoyl dehydrogenase Dihydrolipoyl dehydrogenase (EC 1.8.1.4),Os05g0156700 protein (Fragment) Q94CN9,A0A0P0WIG6 Q94CN9_ORYSJ,A0A0P0WIG6_ORYSJ Os01g0337900 Os01g0337900 OSNPB_010337900 P0487E11.36,Os05g0156700 OSNPB_050156700 MISCELLANEOUS: The active site is a redox-active disulfide bond. {ECO:0000256|RuleBase:RU003692}. ENOG411DUCD PRP19B,PRP19A,MAC3B,MAC3A O22785,Q94BR4,F4IVT2,F4I5P3 PR19B_ARATH,PR19A_ARATH,F4IVT2_ARATH,F4I5P3_ARATH Pre-mRNA-processing factor 19 homolog 2 (EC 2.3.2.27) (MOS4-associated complex protein 3B) (MAC protein 3B) (Plant U-box protein 60) (RING-type E3 ubiquitin transferase PRP19 2) (U-box domain-containing protein 60),Pre-mRNA-processing factor 19 homolog 1 (EC 6.3.2.-) (MOS4-associated complex protein 3A) (MAC protein 3A) (Plant U-box protein 59) (U-box domain-containing protein 59),MOS4-associated complex 3B,MOS4-associated complex 3A defective in R protein-mediated defense response FUNCTION: Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. {ECO:0000250|UniProtKB:Q9UMS4, ECO:0000269|PubMed:18393940, ECO:0000269|PubMed:19629177}.,FUNCTION: Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. {ECO:0000250|UniProtKB:O22785, ECO:0000269|PubMed:19629177}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000269|PubMed:18393940}.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000250|UniProtKB:O22785}. R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-72163; 2.3.2.27,6.3.2.- 56728,56866,52550,56882 Pre-mRNA-processing factor 19 homolog 2 (EC 2.3.2.27) (MOS4-associated complex protein 3B) (MAC protein 3B) (Plant U-box protein 60) (RING-type E3 ubiquitin transferase PRP19 2) (U-box domain-containing protein 60),Pre-mRNA-processing factor 19 homolog 1 (EC 6.3.2.-) (MOS4-associated complex protein 3A) (MAC protein 3A) (Plant U-box protein 59) (U-box domain-containing protein 59),MOS4-associated complex 3B,MOS4-associated complex 3A cell wall [GO:0005618]; chloroplast [GO:0009507]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; Prp19 complex [GO:0000974]; U2-type catalytic step 1 spliceosome [GO:0071006]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium [GO:0042742]; DNA repair [GO:0006281]; generation of catalytic spliceosome for first transesterification step [GO:0000349]; innate immune response [GO:0045087]; protein K63-linked ubiquitination [GO:0070534],nucleolus [GO:0005730]; nucleus [GO:0005634]; Prp19 complex [GO:0000974]; U2-type catalytic step 1 spliceosome [GO:0071006]; ligase activity [GO:0016874]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium [GO:0042742]; DNA repair [GO:0006281]; generation of catalytic spliceosome for first transesterification step [GO:0000349]; innate immune response [GO:0045087]; protein K63-linked ubiquitination [GO:0070534]; response to cadmium ion [GO:0046686],ubiquitin-protein transferase activity [GO:0004842] locus:2051094;,locus:2018319; AT2G33340,AT1G04510 U-box domain-containing protein Pre-mRNA-processing factor 19 (EC 2.3.2.27) (Plant U-box protein 72) (OsPUB72) (RING-type E3 ubiquitin transferase PRP19) (U-box domain-containing protein 72) Q9AV81 PRP19_ORYSJ PRP19 PUB72 Os10g0466300 LOC_Os10g32880 OsJ_31829 OSJNBa0006L06.5 FUNCTION: Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair. {ECO:0000250|UniProtKB:Q9UMS4, ECO:0000269|PubMed:19825583}. ENOG411DUCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0645100 protein,Os06g0110400 protein (Fragment),Os06g0688400 protein,Os06g0691900 protein (Fragment) Q67WM6,A0A0N7KLE4,A0A0P0X042,A0A0P0X0B9 Q67WM6_ORYSJ,A0A0N7KLE4_ORYSJ,A0A0P0X042_ORYSJ,A0A0P0X0B9_ORYSJ Os06g0645100 OsJ_22143 OSNPB_060645100 P0017B12.21,Os06g0110400 OSNPB_060110400,Os06g0688400 OSNPB_060688400,Os06g0691900 OSNPB_060691900 ENOG411DUCF RHON1 Q94K75,A0A1P8AM09,A0A1P8AM12,F4IPY0 RHON1_ARATH,A0A1P8AM09_ARATH,A0A1P8AM12_ARATH,F4IPY0_ARATH Rho-N domain-containing protein 1, chloroplastic,Rho termination factor,ATP binding / ATPase DISRUPTION PHENOTYPE: Smaller and albinotic phenotype. Increased number and decreased size of chloroplasts. Seedling lethal when homozygous. {ECO:0000269|PubMed:22735703}. FUNCTION: Binds to and supports processing of specific plastid RNAs. Associates via its C-terminal Rho-N domain to single stranded regions of 16S and 23S rRNAs or to rbcL mRNAs. May be involved in targeting transcripts to RNases such as RNE or RNase J. {ECO:0000269|PubMed:22735703}. 44530,33145,44998,35593 Rho-N domain-containing protein 1, chloroplastic,Rho termination factor,ATP binding / ATPase chloroplast [GO:0009507]; protein self-association [GO:0043621]; rRNA binding [GO:0019843]; chloroplast mRNA processing [GO:0010239]; chloroplast rRNA processing [GO:1901259]; DNA-templated transcription, termination [GO:0006353]; response to abscisic acid [GO:0009737],DNA-templated transcription, termination [GO:0006353] locus:2038560;,locus:2055846; AT1G06190,AT2G31150 Sap-like protein SAP-like protein BP-73 (OsBP-73) (Riaa1) Q8L4E7 BP73_ORYSJ BP-73 Os03g0183100 LOC_Os03g08480 OSJNBa0032G08.14 FUNCTION: May regulate cell proliferation and plant growth. {ECO:0000269|PubMed:12956528}. ENOG411DUCG PME15,PME14 Q9ZQA3,Q9ZQA4 PME15_ARATH,PME14_ARATH Probable pectinesterase 15 (PE 15) (EC 3.1.1.11) (Pectin methylesterase 15) (AtPME15),Putative pectinesterase 14 (PE 14) (EC 3.1.1.11) (Pectin methylesterase 14) (AtPME14) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT2G36710-MONOMER;,ARA:AT2G36700-MONOMER; 3.1.1.11 44973,37067 Probable pectinesterase 15 (PE 15) (EC 3.1.1.11) (Pectin methylesterase 15) (AtPME15),Putative pectinesterase 14 (PE 14) (EC 3.1.1.11) (Pectin methylesterase 14) (AtPME14) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}. locus:2040535;,locus:2040525; AT2G36710,AT2G36700 pectinesterase Pectinesterase (EC 3.1.1.11) Q651B2 Q651B2_ORYSJ Os09g0571100 Os09g0571100 B1331F11.6 OsJ_30426 OSNPB_090571100 ENOG411DUCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor bHLH041-like Basic helix-loop-helix protein-like (Os06g0570900 protein) Q5Z610 Q5Z610_ORYSJ P0610D01.7 Os06g0570900 OSNPB_060570900 ENOG411DUCB P45434,Q6AWS7,F4IGI4 SSRA_ARATH,Q6AWS7_ARATH,F4IGI4_ARATH Translocon-associated protein subunit alpha (TRAP-alpha) (Signal sequence receptor subunit alpha) (SSR-alpha),At2g16595 (Translocon-associated protein (TRAP), alpha subunit),Translocon-associated protein (TRAP), alpha subunit FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. MISCELLANEOUS: Seems to bind calcium. 28167,27407,20551 Translocon-associated protein subunit alpha (TRAP-alpha) (Signal sequence receptor subunit alpha) (SSR-alpha),At2g16595 (Translocon-associated protein (TRAP), alpha subunit),Translocon-associated protein (TRAP), alpha subunit chloroplast thylakoid membrane [GO:0009535]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; cotranslational protein targeting to membrane [GO:0006613],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; cotranslational protein targeting to membrane [GO:0006613],endoplasmic reticulum membrane [GO:0005789] locus:2047077;,locus:3436229; AT2G21160,AT2G16595 Translocon-associated protein Os06g0715500 protein (Putative SSR alpha subunit) (cDNA clone:006-203-A09, full insert sequence) (cDNA clone:006-309-E05, full insert sequence) (cDNA clone:J023120J15, full insert sequence) Q5Z9P6 Q5Z9P6_ORYSJ Os06g0715500 OsJ_22661 OSNPB_060715500 P0481E08.15 ENOG411DUCC Q0WP85 PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial 58649 Pentatricopeptide repeat-containing protein At2g13420, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT2G13420 Pentatricopeptide repeat-containing protein Os08g0369200 protein (cDNA clone:001-200-A07, full insert sequence) Q0J647 Q0J647_ORYSJ Os08g0369200 Os08g0369200 OsJ_27088 OSNPB_080369200 ENOG411DUC8 AAE14 Q8VYJ1,A0A1P8ATR3 MENE_ARATH,A0A1P8ATR3_ARATH 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal (EC 6.2.1.26) (Acyl-activating enzyme 14) (O-succinylbenzoyl-CoA ligase),Acyl-activating enzyme 14 DISRUPTION PHENOTYPE: Lack of phylloquinone and seedling lethal. {ECO:0000269|PubMed:18208520}. Seedling lethal-J. Browse-2008 FUNCTION: Involved in the biosynthesis of phylloquinone (vitamin K1). Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA). {ECO:0000269|PubMed:18208520}. ARA:AT1G30520-MONOMER; 6.2.1.26; 6.2.1.26 61917,52670 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal (EC 6.2.1.26) (Acyl-activating enzyme 14) (O-succinylbenzoyl-CoA ligase),Acyl-activating enzyme 14 chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; o-succinylbenzoate-CoA ligase activity [GO:0008756]; phylloquinone biosynthetic process [GO:0042372],integral component of membrane [GO:0016021]; catalytic activity [GO:0003824]; metabolic process [GO:0008152] TISSUE SPECIFICITY: High expression in young leaves and flowers. Not expressed in roots. {ECO:0000269|PubMed:12805634, ECO:0000269|PubMed:18208520}. locus:2028165; AT1G30520 2-succinylbenzoate--CoA ligase chloroplastic peroxisomal-like Os08g0130400 protein (cDNA clone:J013044N22, full insert sequence) B7EBJ6 B7EBJ6_ORYSJ Os08g0130400 OSNPB_080130400 ENOG411DUC9 STIPL1,STIPL2 Q9SHG6,Q9SLC6 STIP1_ARATH,STIP2_ARATH Septin and tuftelin-interacting protein 1 homolog 1 (Nineteen complex-related protein 1 homolog) (AtNTR1) (Protein SPLICEOSOMAL TIMEKEEPER LOCUS 1),Septin and tuftelin-interacting protein 1 homolog 2 (Protein SPLICEOSOMAL TIMEKEEPER LOCUS 2) DISRUPTION PHENOTYPE: Long circadian-period phenotype under free-running conditions. {ECO:0000269|PubMed:23110899}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23110899}. FUNCTION: Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events (By similarity). Involved in snRNPs recycling (PubMed:25568310). Required for efficient splicing of genes that act within the plant circadian clock (PubMed:23110899). Part of a transcription elongation checkpoint at alternative exons (PubMed:25568310). Required for correct expression and splicing of DOG1, a regulator of seed dormancy (PubMed:25568310). May induce transient transcriptional pausing of polymerase II at slices sites (PubMed:25568310). {ECO:0000250|UniProtKB:Q9UBB9, ECO:0000269|PubMed:23110899, ECO:0000269|PubMed:25568310}.,FUNCTION: Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. {ECO:0000250}. MISCELLANEOUS: Physically located at the target splice sites. {ECO:0000269|PubMed:25568310}. 96884,86525 Septin and tuftelin-interacting protein 1 homolog 1 (Nineteen complex-related protein 1 homolog) (AtNTR1) (Protein SPLICEOSOMAL TIMEKEEPER LOCUS 1),Septin and tuftelin-interacting protein 1 homolog 2 (Protein SPLICEOSOMAL TIMEKEEPER LOCUS 2) nuclear lumen [GO:0031981]; U2-type post-mRNA release spliceosomal complex [GO:0071008]; DNA binding [GO:0003677]; U1 snRNP binding [GO:1990446]; mRNA splicing, via spliceosome [GO:0000398]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355]; spliceosomal complex disassembly [GO:0000390],U2-type post-mRNA release spliceosomal complex [GO:0071008]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; spliceosomal complex disassembly [GO:0000390] locus:2020332;,locus:2053839; AT1G17070,AT2G42330 May be involved in pre-mRNA splicing (By similarity) G-patch domain containing protein, expressed (Os12g0615800 protein) (cDNA clone:J033071N19, full insert sequence) Q2QM64 Q2QM64_ORYSJ LOC_Os12g42140 Os12g0615800 OSNPB_120615800 ENOG411DUC4 MMD1,MS1 Q7X6Y7,Q9FMS5,P93310 MMD1_ARATH,MS1_ARATH,M550_ARATH PHD finger protein MALE MEIOCYTE DEATH 1,PHD finger protein MALE STERILITY 1,Uncharacterized mitochondrial protein AtMg00550 (ORF160) DISRUPTION PHENOTYPE: Male sterile that lacks pollen and undergoes an aberrant male meiosis resulting in the formation of two uni- to tri-nucleate cells instead of a normal tetrad, accompanied by aberrant chromosomal organization from diplotene followed by metaphase 1 arrest. After, male meiocytes exhibit signs of apoptosis, including defects in chromosome behavior, cytoplasmic shrinkage, and chromatin fragmentation, followed by cell death before cytokinesis. {ECO:0000269|PubMed:12782723, ECO:0000269|PubMed:14573517}.,DISRUPTION PHENOTYPE: No production of viable pollen. Degeneration of pollen occurs soon after microspore release from the tetrads, at which time the tapetum also appears abnormally vacuolated. Abnormal presence of ultrastructural features of apoptosis (PCD) in microspores, but lack of normal PCD in tapetum. Disturbed inflorescence branching and floral development. Impaired cell wall modifications after primexine formation within the callose wall, accompanied by reduced internal intine wall. {ECO:0000269|PubMed:11696184, ECO:0000269|PubMed:12461128, ECO:0000269|PubMed:16908508, ECO:0000269|PubMed:18032629, ECO:0000269|PubMed:18032630, ECO:0000269|PubMed:7824655}. Male sterile; Short filaments; Incomplete penetrance of decreased stamen number-H. Ma-2003,Male sterile-P. Tighe-2001 FUNCTION: Probable transcription factor required for chromosome organization and progression during male meiosis (e.g. microsporogenesis). {ECO:0000269|PubMed:12782723, ECO:0000269|PubMed:14573517}.,FUNCTION: Transcriptional activator required for anther and post-meiotic pollen development and maturation. Seems to regulate inflorescence branching and floral development. May control tapetal development by directly regulating tapetal programmed cell death (PCD) and breakdown. Implicated in pollen cytosolic components and wall development (e.g. exine and intine formation). {ECO:0000269|PubMed:11696184, ECO:0000269|PubMed:12461128, ECO:0000269|PubMed:16908508, ECO:0000269|PubMed:18032629, ECO:0000269|PubMed:18032630, ECO:0000269|PubMed:7824655}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07714) is demonstrated. 80812,77004,18174 PHD finger protein MALE MEIOCYTE DEATH 1,PHD finger protein MALE STERILITY 1,Uncharacterized mitochondrial protein AtMg00550 (ORF160) nuclear euchromatin [GO:0005719]; nucleus [GO:0005634]; activating transcription factor binding [GO:0033613]; DNA binding [GO:0003677]; euchromatin binding [GO:1990188]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; regulatory region DNA binding [GO:0000975]; sequence-specific DNA binding [GO:0043565]; male meiosis chromosome segregation [GO:0007060]; meiotic cell cycle [GO:0051321]; meiotic chromosome condensation [GO:0010032]; meiotic spindle organization [GO:0000212]; pollen sperm cell differentiation [GO:0048235]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; anther wall tapetum morphogenesis [GO:0048655]; cellular response to brassinosteroid stimulus [GO:0071367]; microgametogenesis [GO:0055046]; pollen germination [GO:0009846]; pollen wall assembly [GO:0010208]; positive regulation of transcription, DNA-templated [GO:0045893]; reproductive process [GO:0022414]; transcription, DNA-templated [GO:0006351],mitochondrion [GO:0005739] DEVELOPMENTAL STAGE: First detected in sporogenous cells at late anther stage 4. Maximum levels observed in male meiocytes at anther stage 5, prior to meiosis. Fades out at anther stage 6, during meiosis to disappear later. Also present at low levels in the placenta of very young pistils. {ECO:0000269|PubMed:12782723, ECO:0000269|PubMed:14573517}.,DEVELOPMENTAL STAGE: Expressed at low levels in anthers from closed buds, with expression in the tapetum at the stage before microspore release from tetrads. {ECO:0000269|PubMed:11696184, ECO:0000269|PubMed:12461128}. TISSUE SPECIFICITY: Expressed in inflorescence, specifically in male meiocytes. {ECO:0000269|PubMed:12782723, ECO:0000269|PubMed:14573517}.,TISSUE SPECIFICITY: In closed flower buds, especially in anthers. {ECO:0000269|PubMed:11696184}. locus:2013845;,locus:2176317;,locus:504954538; AT1G66170,AT5G22260,ATMG00550 PHD finger protein NA NA NA NA NA NA NA ENOG411DUC5 VTE5 Q9LZ76,A0A1P8BA70 PHYK1_ARATH,A0A1P8BA70_ARATH Phytol kinase 1, chloroplastic (EC 2.7.1.182) (Vitamin E pathway gene 5 protein),Phytol kinase 1 VTE5 DISRUPTION PHENOTYPE: 50% reduction in tocopherol content in leaves. Plants able to grow on soil and to produce fertile seeds. Vte5 and vte6 double mutants can grow photoautotrophically and show a stay-green phenotype with strongly delayed senescence and extended lifetime. {ECO:0000269|PubMed:26452599}. Contains three-fold more phytol than wildtype.,Low tocopherol (lt) line with an 80% reduction in total tocopherol content compared to wildtype.,No significant difference in chlorophyll content between mutant and wildtype. Low tocopherol levels in seeds-H. Valentin-2006 FUNCTION: Kinase involved in the activation and reutilization of phytol from chlorophyll degradation in plant metabolism, including tocopherol biosynthesis. Catalyzes the conversion of phytol to phytol monophosphate (PMP) in the presence of CTP or UTP. No activity with ATP or GTP as phosphoryl donor. {ECO:0000269|PubMed:16361393}. PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis. {ECO:0000269|PubMed:16361393, ECO:0000269|PubMed:26452599}. ARA:AT5G04490-MONOMER;MetaCyc:AT5G04490-MONOMER; 2.7.1.182; 2.7.1.182 33090,26245 Phytol kinase 1, chloroplastic (EC 2.7.1.182) (Vitamin E pathway gene 5 protein),Phytol kinase 1 VTE5 chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; phytol kinase activity [GO:0010276]; vitamin E biosynthetic process [GO:0010189],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] DEVELOPMENTAL STAGE: Highly expressed early in seed development and in 6-week-old senescent leaves. {ECO:0000269|PubMed:16361393}. locus:2184447; AT5G04490 Involved in the activation and reutilization of phytol from chlorophyll degradation in plant metabolism including tocopherol biosynthesis. Catalyzes the conversion of phytol to phytolmonophosphate (PMP) Probable phytol kinase 1, chloroplastic (EC 2.7.1.182),Os04g0670700 protein (Fragment) Q7XR51,Q0J959 PHYK1_ORYSJ,Q0J959_ORYSJ Os04g0670700 LOC_Os04g57500 OSJNBa0043A12.34,Os04g0670700 Os04g0670700 OSNPB_040670700 FUNCTION: Involved in the activation and reutilization of phytol from chlorophyll degradation in plant metabolism, including tocopherol biosynthesis. Catalyzes the conversion of phytol to phytol monophosphate (PMP) (By similarity). {ECO:0000250}. ENOG411DUC6 CCB1 Q9LSE4 CCB1_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic DISRUPTION PHENOTYPE: Seedling lethal when grown on soil. On agar plates supplied with sucrose, seedlings grow very slowly with a chlorotic phenotype. Deficiency in the accumulation of the subunits of the cytochrome b6f complex and lack of covalent heme binding to cytochrome b6. {ECO:0000269|PubMed:18593701}. FUNCTION: Required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Controls the conversion of apocytochrome b6 to holocytochrome b6. Required for covalent binding of the c-type heme to cytochrome b6. {ECO:0000269|PubMed:18593701}. 30101 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; cytochrome b6f complex assembly [GO:0010190] locus:2090807; AT3G26710 Protein of unknown function (DUF3529) Os11g0526200 protein (Fragment) A0A0P0Y329 A0A0P0Y329_ORYSJ Os11g0526200 OSNPB_110526200 ENOG411DUC7 MNF13.5 Q93Z74,Q8VYI8,A0A1P8BAT6,F4IWK4 Q93Z74_ARATH,Q8VYI8_ARATH,A0A1P8BAT6_ARATH,F4IWK4_ARATH AT3g27570/MMJ24_12 (Sucrase/ferredoxin-like family protein),AT5g40510/MNF13_30 (Sucrase/ferredoxin-like family protein),Sucrase/ferredoxin-like family protein 37147,36761,40989,41612 AT3g27570/MMJ24_12 (Sucrase/ferredoxin-like family protein),AT5g40510/MNF13_30 (Sucrase/ferredoxin-like family protein),Sucrase/ferredoxin-like family protein integral component of membrane [GO:0016021],cytosol [GO:0005829]; integral component of membrane [GO:0016021] locus:2168733;,locus:2091433; AT5G40510,AT3G27570 altered inheritance of mitochondria protein 32-like NA NA NA NA NA NA NA ENOG411DUC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA eRF1 domain 1 Os01g0939500 protein (Putative eukaryotic peptide chain release factor subunit 1-3) Q8RV12 Q8RV12_ORYSJ Os01g0939500 B1150F11.15 OsJ_04715 OSNPB_010939500 P0504E02.39 ENOG411DUC1 Q9M1I1,A0A1I9LN96 FB304_ARATH,A0A1I9LN96_ARATH F-box protein At3g54460,SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein 155413,122791 F-box protein At3g54460,SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein plasmodesma [GO:0009506]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; zinc ion binding [GO:0008270],ATP binding [GO:0005524]; helicase activity [GO:0004386]; zinc ion binding [GO:0008270] locus:504955712; AT3G54460 F-Box protein Os01g0952200 protein (Putative rad8),Os01g0952200 protein (Fragment) Q5JL01,A0A0P0VCX9 Q5JL01_ORYSJ,A0A0P0VCX9_ORYSJ Os01g0952200 Os01g0952200 OsJ_04781 OSNPB_010952200 P0431G06.4,Os01g0952200 OSNPB_010952200 ENOG411DUC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium hydrogen exchanger NA NA NA NA NA NA NA ENOG411DUC3 Q9C8R4,F4I4Q9 Q9C8R4_ARATH,F4I4Q9_ARATH SGS domain-containing protein (Uncharacterized protein At1g30070) (Uncharacterized protein At1g30070/T1P2_12) (Uncharacterized protein T1P2.12),SGS domain-containing protein 24820,25687 SGS domain-containing protein (Uncharacterized protein At1g30070) (Uncharacterized protein At1g30070/T1P2_12) (Uncharacterized protein T1P2.12),SGS domain-containing protein plasma membrane [GO:0005886] locus:2198284; AT1G30070 Calcyclin-binding protein Os01g0757500 protein (Putative calcyclin-binding protein) (cDNA clone:J033086D07, full insert sequence),Os01g0757500 protein (Fragment) Q5JLZ9,A0A0P0V8B8 Q5JLZ9_ORYSJ,A0A0P0V8B8_ORYSJ Os01g0757500 OJ1414_E05.22 OsJ_03508 OSNPB_010757500,Os01g0757500 OSNPB_010757500 ENOG411DVIU Q9ZVQ2 Q9ZVQ2_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Putative cinnamoyl-CoA reductase) ARA:AT2G02400-MONOMER; 34840 NAD(P)-binding Rossmann-fold superfamily protein (Putative cinnamoyl-CoA reductase) plasma membrane [GO:0005886]; catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2056171; AT2G02400 Cinnamoyl-CoA reductase Os01g0978400 protein (Putative cinnamoyl CoA reductase) Q84SE2 Q84SE2_ORYSJ Os01g0978400 OSJNOa275J08.3 OSNPB_010978400 P0020E09.32 ENOG411DVIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione NA NA NA NA NA NA NA ENOG411DVID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Os06g0680500 protein (Fragment),Glutamate receptor,Os07g0522600 protein (Putative ionotropic glutamate receptor homolog GLR4),Os07g0522600 protein (Fragment) Q0DA37,Q6ZGL7,Q5QLP6,A0A0P0X6J7 Q0DA37_ORYSJ,Q6ZGL7_ORYSJ,Q5QLP6_ORYSJ,A0A0P0X6J7_ORYSJ Os06g0680500 Os06g0680500 OSNPB_060680500,Os02g0117500 Os02g0117500 OJ1442_E05.29 OSNPB_020117500,OJ1372_D12.115 Os07g0522600 OSNPB_070522600,Os07g0522600 OSNPB_070522600 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. ENOG411DVIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411EH3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridine nucleotide-disulphide oxidoreductase NA NA NA NA NA NA NA ENOG411EDRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein NA NA NA NA NA NA NA ENOG411EDRH TPS4 Q9T079,A0A1P8B3B4 TPS4_ARATH,A0A1P8B3B4_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 4) (AtTPS4),Trehalose-6-phosphatase synthase S4 2.4.1.15 89474,88501 Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 4) (AtTPS4),Trehalose-6-phosphatase synthase S4 cytoplasm [GO:0005737]; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [GO:0003825]; phosphatase activity [GO:0016791]; trehalose biosynthetic process [GO:0005992]; trehalose metabolism in response to stress [GO:0070413],catalytic activity [GO:0003824]; trehalose biosynthetic process [GO:0005992] locus:2137712; AT4G27550 Glycosyltransferase family 20 NA NA NA NA NA NA NA ENOG411EDRK TPS3,TPS2 Q9SHG0,Q9FZ57,A0A1P8AQY2 TPS3_ARATH,TPS2_ARATH,A0A1P8AQY2_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 3) (AtTPS3),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 2) (AtTPS2),Trehalose-6-phosphate synthase 2.4.1.15 89483,93005,75364 Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 3) (AtTPS3),Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 2) (AtTPS2),Trehalose-6-phosphate synthase cytoplasm [GO:0005737]; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [GO:0003825]; phosphatase activity [GO:0016791]; trehalose biosynthetic process [GO:0005992]; trehalose metabolism in response to stress [GO:0070413],alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [GO:0003825]; trehalose biosynthetic process [GO:0005992] AT1G17000,AT1G16980 Glycosyltransferase family 20 NA NA NA NA NA NA NA ENOG411EDRJ THO5A F4HRC1 THO5A_ARATH THO complex subunit 5A (THO complex subunit 5) (AtTHO5) FUNCTION: Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. {ECO:0000250}. 51812 THO complex subunit 5A (THO complex subunit 5) (AtTHO5) nuclear chromosome [GO:0000228]; THO complex [GO:0000347]; THO complex part of transcription export complex [GO:0000445]; mRNA binding [GO:0003729]; mRNA export from nucleus [GO:0006406]; mRNA processing [GO:0006397]; positive regulation of DNA-templated transcription, elongation [GO:0032786]; RNA splicing [GO:0008380] locus:1005716682; AT1G45233 Fms-interacting protein NA NA NA NA NA NA NA ENOG411EDRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: alpha beta fold family NA NA NA NA NA NA NA ENOG411EDRT O64780,O64770,O64777,O64776,A0A1P8AM92,A0A1P8AM95,A0A1P8AMA7,A0A1P8AVJ2,A0A1P8AMA3,A0A1P8AMD4,A0A1P8AM94,A0A1P8AVQ7,A0A1P8AMA0,A0A1P8ASG9,A0A1P8ASM5,A0A1P8AM91,A0A1P8AVL2 Y1614_ARATH,Y1649_ARATH,Y1643_ARATH,Y1144_ARATH,A0A1P8AM92_ARATH,A0A1P8AM95_ARATH,A0A1P8AMA7_ARATH,A0A1P8AVJ2_ARATH,A0A1P8AMA3_ARATH,A0A1P8AMD4_ARATH,A0A1P8AM94_ARATH,A0A1P8AVQ7_ARATH,A0A1P8AMA0_ARATH,A0A1P8ASG9_ARATH,A0A1P8ASM5_ARATH,A0A1P8AM91_ARATH,A0A1P8AVL2_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61400 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61490 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61430 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61440 (EC 2.7.11.1),S-locus lectin protein kinase family protein 2.7.11.1 91382,89935,90202,89092,87113,80926,64777,86892,62030,65626,81267,92353,78179,89629,92608,89861,73523 G-type lectin S-receptor-like serine/threonine-protein kinase At1g61400 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61490 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61430 (EC 2.7.11.1),G-type lectin S-receptor-like serine/threonine-protein kinase At1g61440 (EC 2.7.11.1),S-locus lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; recognition of pollen [GO:0048544] locus:2197664;,locus:2197724;,locus:2197714; AT1G61400,AT1G61490,AT1G61430,AT1G61440 G-type lectin S-receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EDRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0331200 protein A0A0N7KH75 A0A0N7KH75_ORYSJ Os03g0331200 OSNPB_030331200 ENOG411EDRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arsenite-resistance protein 2 Os02g0149600 protein (Putative C2H2 zinc-finger protein SERRATE) Q6Z422 Q6Z422_ORYSJ Os02g0149600 OSNPB_020149600 P0479D12.33 ENOG411EDRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYND finger F-box protein-like (Os02g0506400 protein) Q6K6K8 Q6K6K8_ORYSJ Os02g0506400 OSNPB_020506400 P0047E05.12 ENOG411EDRX CSLA3,CSLA03 Q9LQC9,A0A1P8ANC3 CSLA3_ARATH,A0A1P8ANC3_ARATH Probable mannan synthase 3 (EC 2.4.1.-) (Cellulose synthase-like protein A3) (AtCslA3),Cellulose synthase-like A3 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q9LZR3}. ARA:AT1G23480-MONOMER; 2.4.1.- 64402,47768 Probable mannan synthase 3 (EC 2.4.1.-) (Cellulose synthase-like protein A3) (AtCslA3),Cellulose synthase-like A3 Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555],integral component of membrane [GO:0016021] locus:2028862; AT1G23480 Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411EDRZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411EDR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0223800 protein,Os01g0223700 protein A0A0P0UZX5,A0A0P0UZZ8 A0A0P0UZX5_ORYSJ,A0A0P0UZZ8_ORYSJ Os01g0223800 OSNPB_010223800,Os01g0223700 OSNPB_010223700 ENOG411EDR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EDR1 CHX27,CHX26 Q9M007,Q9M008 CHX27_ARATH,CHX26_ARATH Cation/H(+) antiporter 27 (Protein CATION/H+ EXCHANGER 27) (AtCHX27),Cation/H(+) antiporter 26 (Protein CATION/H+ EXCHANGER 26) (AtCHX26) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 86991,87038 Cation/H(+) antiporter 27 (Protein CATION/H+ EXCHANGER 27) (AtCHX27),Cation/H(+) antiporter 26 (Protein CATION/H+ EXCHANGER 26) (AtCHX26) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:15347787}.,TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:2149760;,locus:2149740; AT5G01690,AT5G01680 May operate as a cation H( ) antiporter (By similarity) NA NA NA NA NA NA NA ENOG411E5UU T12C14_150 Q9LZP5 Q9LZP5_ARATH DNA mismatch repair protein (Uncharacterized protein At3g62450) (Uncharacterized protein At3g62450/T12C14_150) (Uncharacterized protein T12C14_150) 8455 DNA mismatch repair protein (Uncharacterized protein At3g62450) (Uncharacterized protein At3g62450/T12C14_150) (Uncharacterized protein T12C14_150) integral component of membrane [GO:0016021] locus:2096069; AT3G62450 NA Os11g0107450 protein,Os12g0106550 protein C7J8D1,B9GBF7 C7J8D1_ORYSJ,B9GBF7_ORYSJ Os11g0107450 OSNPB_110107450,Os12g0106550 Os12g0106550 OsJ_34945 OSNPB_120106550 ENOG411E5UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NtEPc-like (Os06g0553800 protein) Q5Z9C8 Q5Z9C8_ORYSJ P0427B07.38-1 Os06g0553800 OSNPB_060553800 ENOG411E5UP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0532300 protein (cDNA, clone: J100019F21, full insert sequence) B7F9Z0 B7F9Z0_ORYSJ Os01g0532300 OsJ_02082 OSNPB_010532300 ENOG411E5US COPT6,COPT2 Q8GWP3,Q9STG2 COPT6_ARATH,COPT2_ARATH Copper transporter 6 (AtCOPT6),Copper transporter 2 (AtCOPT2) FUNCTION: Involved in the transport of copper. {ECO:0000250}.,FUNCTION: Involved in the transport of copper. {ECO:0000269|PubMed:12650623}. 15806,17058 Copper transporter 6 (AtCOPT6),Copper transporter 2 (AtCOPT2) integral component of membrane [GO:0016021]; vacuole [GO:0005773]; copper ion transmembrane transporter activity [GO:0005375],anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; copper ion transmembrane transporter activity [GO:0005375] TISSUE SPECIFICITY: Highly expressed in leaves and at lower levels in roots, stems and flowers. {ECO:0000269|PubMed:12650623}. locus:504955951;,locus:2102752; AT2G26975,AT3G46900 copper transporter Copper transporter 3 (OsCOPT3),Copper transporter 1 (OsCOPT1),Copper transporter 2 (OsCOPT2) Q5ZD08,Q94EE4,Q60EN8 COPT3_ORYSJ,COPT1_ORYSJ,COPT2_ORYSJ COPT3 Os01g0770800 LOC_Os01g56430 P0665A11.23,COPT1 Os01g0770700 LOC_Os01g56420 P0665A11.22,COPT2 Os05g0424700 LOC_Os05g35050 OJ1212_B02.11 DISRUPTION PHENOTYPE: Reduced copper transport ability, inncrease in copper content of the xylem, and enhanced resistance against X.oryzae pv. oryzae (Xoo) PXO99. {ECO:0000269|PubMed:20852017}. FUNCTION: Involved in the transport of copper. {ECO:0000250}.,FUNCTION: Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo). {ECO:0000269|PubMed:20852017}.,FUNCTION: Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo). {ECO:0000269|PubMed:20852017}. ENOG411E5UR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavokinase NA NA NA NA NA NA NA ENOG411E5UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRC Os06g0207600 protein,Os02g0773600 protein A0A0P0WUC6,A0A0P0VQ63 A0A0P0WUC6_ORYSJ,A0A0P0VQ63_ORYSJ Os06g0207600 OSNPB_060207600,Os02g0773600 OSNPB_020773600 ENOG411E5UX SEC61G1,SEC61G3,SEC61G2 P0DI74,Q9SMP2,P0DI75 S61G1_ARATH,S61G3_ARATH,S61G2_ARATH Protein transport protein Sec61 subunit gamma-1,Protein transport protein Sec61 subunit gamma-3,Protein transport protein Sec61 subunit gamma-2 FUNCTION: Necessary for protein translocation in the endoplasmic reticulum. {ECO:0000250}. R-ATH-381038; Phagosome (04145),Protein export (03060),Vibrio cholerae infection (05110),Protein processing in endoplasmic reticulum (04141) 7737,7683 Protein transport protein Sec61 subunit gamma-1,Protein transport protein Sec61 subunit gamma-3,Protein transport protein Sec61 subunit gamma-2 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein targeting [GO:0006605],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein targeting [GO:0006605] locus:2114530; AT4G24920,AT3G48570,AT5G50460 protein transport protein sec61 Protein transport protein Sec61 subunit gamma,Os06g0653900 protein (Putative transport protein SEC61) P38385,Q67WC8 SC61G_ORYSJ,Q67WC8_ORYSJ Os02g0178400 LOC_Os02g08180 OsJ_05608 P0544B02.4,Os06g0653900 OsJ_22201 OSJNBa0085J13.23 OSNPB_060653900 P0709F06.6 FUNCTION: Necessary for protein translocation in the endoplasmic reticulum. {ECO:0000250}. ENOG411E5UZ F24K9.17,SNRNP-G O82221,Q9CAX7,A8MSG1 RUXG_ARATH,Q9CAX7_ARATH,A8MSG1_ARATH Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG),Putative small nuclear ribonucleoprotein polypeptide G (Putative small nuclear ribonucleoprotein polypeptide G; 65009-64161) (Small nuclear ribonucleoprotein family protein),Putative small nuclear ribonucleoprotein G FUNCTION: Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome. {ECO:0000250}. R-ATH-72163;R-ATH-72165; 8839,8751,5797 Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG),Putative small nuclear ribonucleoprotein polypeptide G (Putative small nuclear ribonucleoprotein polypeptide G; 65009-64161) (Small nuclear ribonucleoprotein family protein),Putative small nuclear ribonucleoprotein G catalytic step 2 spliceosome [GO:0071013]; cytosol [GO:0005829]; P granule [GO:0043186]; precatalytic spliceosome [GO:0071011]; SMN-Sm protein complex [GO:0034719]; spliceosomal tri-snRNP complex [GO:0097526]; U1 snRNP [GO:0005685]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; U4 snRNP [GO:0005687]; U5 snRNP [GO:0005682]; mRNA binding [GO:0003729]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal snRNP assembly [GO:0000387],catalytic step 2 spliceosome [GO:0071013]; nucleolus [GO:0005730]; P granule [GO:0043186]; precatalytic spliceosome [GO:0071011]; SMN-Sm protein complex [GO:0034719]; spliceosomal tri-snRNP complex [GO:0097526]; U1 snRNP [GO:0005685]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; U4 snRNP [GO:0005687]; U5 snRNP [GO:0005682]; viral nucleocapsid [GO:0019013]; mRNA splicing, via spliceosome [GO:0000398]; spliceosomal snRNP assembly [GO:0000387],intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013] locus:2061446;,locus:2080777; AT2G23930,AT3G11500 Small nuclear ribonucleoprotein Os03g0410900 protein (Putative small nuclear ribonucleoprotein polypeptide G) (Small nuclear ribonucleoprotein G, putative, expressed) (cDNA, clone: J100029F12, full insert sequence),Os07g0608700 protein,Os07g0608700 protein (Putative small nuclear ribonucleoprotein E) (cDNA, clone: J100001P06, full insert sequence) Q75K32,Q0D4R5,Q6YTY0 Q75K32_ORYSJ,Q0D4R5_ORYSJ,Q6YTY0_ORYSJ Os03g0410900 LOC_Os03g29740 Os03g0410900 OsJ_11235 OSJNBb0108E08.21 OSNPB_030410900,Os07g0608700 Os07g0608700 OSNPB_070608700,Os07g0608700 OsJ_25073 OSJNBb0018L13.7 OSNPB_070608700 ENOG411E5UN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os03g0791300 protein B9F6E4 B9F6E4_ORYSJ Os03g0791300 OsJ_12901 OSNPB_030791300 ENOG411E5UI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os03g0791366 protein (Plastocyanin-like domain containing protein) (Putative blue copper-binding protein) Q852J1 Q852J1_ORYSJ OSJNBb0060J21.33 Os03g0791366 LOC_Os03g57740 OSNPB_030791366 ENOG411E5UH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M50 NA NA NA NA NA NA NA ENOG411E5UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E5UJ BBX28 O81834 O81834_ARATH B-box type zinc finger family protein (Uncharacterized protein AT4g27310) 24135 B-box type zinc finger family protein (Uncharacterized protein AT4g27310) intracellular [GO:0005622]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2131709; AT4G27310 BBOX NA NA NA NA NA NA NA ENOG411E5U5 Q9T0E8 Q9T0E8_ARATH At4g09890 (Mediator of RNA polymerase II transcription subunit, putative (DUF3511)) (Uncharacterized protein AT4g09890) (Uncharacterized protein T5L19.20) 10167 At4g09890 (Mediator of RNA polymerase II transcription subunit, putative (DUF3511)) (Uncharacterized protein AT4g09890) (Uncharacterized protein T5L19.20) locus:2140598; AT4G09890 Domain of unknown function (DUF3511) Os06g0686600 protein Q653H1 Q653H1_ORYSJ Os06g0686600 Os06g0686600 OsJ_22415 OSNPB_060686600 P0623A10.12 ENOG411E5U9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RHOD NA NA NA NA NA NA NA ENOG411DY51 SPX4 Q94A21,A0A1P8B9Y0 SPX4_ARATH,A0A1P8B9Y0_ARATH SPX domain-containing protein 4 (Protein SPX DOMAIN GENE 4) (AtSPX4),SPX domain-containing protein 4 36036,44332 SPX domain-containing protein 4 (Protein SPX DOMAIN GENE 4) (AtSPX4),SPX domain-containing protein 4 endoplasmic reticulum [GO:0005783]; cellular response to phosphate starvation [GO:0016036],cellular response to cold [GO:0070417] locus:2150921; AT5G15330 SPX domain-containing protein SPX domain-containing protein 4 (Protein SPX DOMAIN GENE 4) (OsSPX4),Os03g0827500 protein Q10B79,A0A0P0W4Z1 SPX4_ORYSJ,A0A0P0W4Z1_ORYSJ SPX4 Os03g0827500 LOC_Os03g61200 OsJ_13205 OSJNBa0010E04.24,Os03g0827500 OSNPB_030827500 DISRUPTION PHENOTYPE: Growth inihibition, Pi accumulation in shoots and up-regulation of phosphate starvation-induced (PSI) genes downstream of PHR2 under high phosphate conditions. {ECO:0000269|PubMed:24692424}. FUNCTION: Inositol polyphosphate sensor that associates with transcription factors to regulate Pi starvation responses (PubMed:27080106). The SPX domain provides a basic binding surface for inositol polyphosphate signaling molecules (PubMed:27080106). Interacts with PHR2 to inhibits its translocation to the nucleus and repress its DNA-binding activity, and then negatively regulate Pi signaling (PubMed:24692424). {ECO:0000269|PubMed:24692424, ECO:0000269|PubMed:27080106}. ENOG411DY58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os03g0181675 protein,Os03g0181750 protein A0A0P0VTS6,A0A0P0VTT5 A0A0P0VTS6_ORYSJ,A0A0P0VTT5_ORYSJ Os03g0181675 OSNPB_030181675,Os03g0181750 OSNPB_030181750 ENOG411DY59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) A0A0P0XAP5 A0A0P0XAP5_ORYSJ Os08g0103400 OSNPB_080103400 ENOG411DY5G DAPB3 Q9FJ82 DAPB3_ARATH Dihydrodipicolinate reductase-like protein CRR1, chloroplastic (4-hydroxy-tetrahydrodipicolinate reductase 3) (HTPA reductase 3) (Protein CHLORORESPIRATORY REDUCTION 1) DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:17727612}. FUNCTION: Dihydrodipicolinate reductase (DHPR)-like protein that may not function as DHPR in lysine biosynthesis (PubMed:15652176, PubMed:17727612). Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron transport chain. May function in assembly or stabilization of the NDH complex (PubMed:17727612). {ECO:0000269|PubMed:15652176, ECO:0000269|PubMed:17727612}. MISCELLANEOUS: Unlike DAPB1 and DAPB2, DAPB3 is unable to complement an E.coli dapB strain. {ECO:0000269|PubMed:15652176}. ARA:AT5G52100-MONOMER; 32038 Dihydrodipicolinate reductase-like protein CRR1, chloroplastic (4-hydroxy-tetrahydrodipicolinate reductase 3) (HTPA reductase 3) (Protein CHLORORESPIRATORY REDUCTION 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 4-hydroxy-tetrahydrodipicolinate reductase [GO:0008839]; lysine biosynthetic process via diaminopimelate [GO:0009089]; photosynthesis, light reaction [GO:0019684] TISSUE SPECIFICITY: Expressed specifically in leaves. {ECO:0000269|PubMed:17727612}. locus:2173043; AT5G52100 dihydrodipicolinate reductase Dihydrodipicolinate reductase, C-terminus family protein, expressed (Os03g0118600 protein) (cDNA clone:J013023L22, full insert sequence),Dihydrodipicolinate reductase, C-terminus family protein, expressed (Os03g0118600 protein) (cDNA clone:001-046-A07, full insert sequence),Os03g0117000 protein Q10SL6,Q10SL7,A0A0P0VSI0 Q10SL6_ORYSJ,Q10SL7_ORYSJ,A0A0P0VSI0_ORYSJ LOC_Os03g02690 Os03g0118600 OsJ_09189 OSNPB_030118600,Os03g0118600 LOC_Os03g02690 OSNPB_030118600,Os03g0117000 OSNPB_030117000 ENOG411DY5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0283125 protein (Putative receptor-type protein kinase LRK1) Q6YWI8 Q6YWI8_ORYSJ Os07g0283125 OSJNBa0018O23.18 OSJNBa0028O21.6 OSNPB_070283125 ENOG411E1R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S7e 40S ribosomal protein S7 Q8LJU5,Q10MS5,Q0DSN8,A0A0P0VIB4 RS7_ORYSJ,Q10MS5_ORYSJ,Q0DSN8_ORYSJ,A0A0P0VIB4_ORYSJ RPS7 Os05g0346300 LOC_Os05g27940 B1036C05.13 B1164G01.3 OsJ_18157,Os03g0297100 LOC_Os03g18570 Os03g0297100 OsJ_10495 OSNPB_030297100,Os03g0297300 OSNPB_030297300,Os02g0324500 OSNPB_020324500 ENOG411E1R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 72 (OsPP2C72) (EC 3.1.3.16),Probable protein phosphatase 2C 28 (OsPP2C28) (EC 3.1.3.16),Os03g0137200 protein (Fragment) Q7XCJ7,Q10S32,A0A0P0VSV6 P2C72_ORYSJ,P2C28_ORYSJ,A0A0P0VSV6_ORYSJ Os10g0544900 LOC_Os10g39780 OsJ_026955 OsJ_28079 OSJNBa0001O14.1,Os03g0137200 LOC_Os03g04430,Os03g0137200 OSNPB_030137200 ENOG411E1R7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) Os01g0583600 protein (Fragment),Os07g0517600 protein,Os07g0517500 protein,Os07g0517800 protein,Os10g0372300 protein A0A0P0V4J1,A0A0P0X6T1,A0A0P0X6L7,A0A0P0X6R6,A0A0P0XTF6 A0A0P0V4J1_ORYSJ,A0A0P0X6T1_ORYSJ,A0A0P0X6L7_ORYSJ,A0A0P0X6R6_ORYSJ,A0A0P0XTF6_ORYSJ Os01g0583600 OSNPB_010583600,Os07g0517600 OSNPB_070517600,Os07g0517500 OSNPB_070517500,Os07g0517800 OSNPB_070517800,Os10g0372300 OSNPB_100372300 ENOG411E1R0 LAC3 Q56YT0 LAC3_ARATH Laccase-3 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 3) (Diphenol oxidase 3) (Urishiol oxidase 3) no observable phenotype FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ARA:AT2G30210-MONOMER; 1.10.3.2 64027 Laccase-3 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 3) (Diphenol oxidase 3) (Urishiol oxidase 3) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Mostly expressed in roots and siliques. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2060879; AT2G30210 Multicopper oxidase NA NA NA NA NA NA NA ENOG411E1R3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein F-box protein family-like (Os08g0195800 protein) Q6Z072 Q6Z072_ORYSJ Os08g0195800 Os08g0195800 OSNPB_080195800 P0035F08.30 P0412D08.8 ENOG411E1RD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Os05g0574900 protein (cDNA clone:002-125-G08, full insert sequence) Q6F368 Q6F368_ORYSJ Os05g0574900 OJ1268_B08.12 OSNPB_050574900 ENOG411E1RF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein TRANSPARENT TESTA 12-like NA NA NA NA NA NA NA ENOG411E1RA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os03g0724000 protein (Fragment) Q75HA1,A0A0P0W2U0 Q75HA1_ORYSJ,A0A0P0W2U0_ORYSJ Os03g0666600 LOC_Os03g46400 Os03g0666600 OsJ_00619 OSJNBa0056E06.10 OSNPB_030666600,Os03g0724000 OSNPB_030724000 ENOG411E1RB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNB NA NA NA NA NA NA NA ENOG411E1RC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family OSJNBa0013K16.22 protein (Os04g0587300 protein) Q7X6H1 Q7X6H1_ORYSJ Os04g0587300 Os04g0587300 OsJ_15942 OSJNBa0013K16.22 OSNPB_040587300 ENOG411E1RM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 OSJNBa0065O17.12 protein (Os04g0558900 protein) (cDNA clone:J023123N15, full insert sequence) Q7XPR9 Q7XPR9_ORYSJ Os04g0558900 OsJ_15754 OSJNBa0065O17.12 OSNPB_040558900 ENOG411E1RN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411E1RI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os07g0588400 protein A0A0P0X817 A0A0P0X817_ORYSJ Os07g0588400 OSNPB_070588400 ENOG411E1RJ NFYA8 Q9LNP6 NFYA8_ARATH Nuclear transcription factor Y subunit A-8 (AtNF-YA-8) FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 36463 Nuclear transcription factor Y subunit A-8 (AtNF-YA-8) CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}. locus:2007953; AT1G17590 Nuclear transcription factor Y subunit Os02g0776400 protein A0A0N7KG67 A0A0N7KG67_ORYSJ Os02g0776400 OSNPB_020776400 ENOG411E1RK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Os04g0490900 protein,Os04g0490833 protein A0A0P0WBX8,A0A0N7KJA1 A0A0P0WBX8_ORYSJ,A0A0N7KJA1_ORYSJ Os04g0490900 OSNPB_040490900,Os04g0490833 OSNPB_040490833 ENOG411E1RT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione S-transferase, N-terminal domain containing protein, expressed (Os03g0134900 protein) (Putative glutathione S-transferase) Q8H8D6 Q8H8D6_ORYSJ Os03g0134900 LOC_Os03g04220 Os03g0134900 OJ1006F06.9 OsJ_09310 OSNPB_030134900 ENOG411E1RU GWD2 Q9STV0 GWD2_ARATH Alpha-glucan water dikinase 2 (EC 2.7.9.4) FUNCTION: Mediates the incorporation of phosphate into alpha-glucan, mostly at the C-6 position of glucose units. {ECO:0000250}. MISCELLANEOUS: The reaction takes place in three steps, mediated by a phosphocarrier histidine residue located on the surface of the central domain. The two first partial reactions are catalyzed at an active site located on the C-terminal domain, and the third partial reaction is catalyzed at an active site located on the N-terminal domain. For catalytic turnover, the central domain swivels from the concave surface of the C-terminal domain to that of the B-terminal domain (By similarity). {ECO:0000250}. ARA:AT4G24450-MONOMER; 2.7.9.4; 2.7.9.4 144812 Alpha-glucan water dikinase 2 (EC 2.7.9.4) chloroplast envelope [GO:0009941]; alpha-glucan, water dikinase activity [GO:0050521]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; carbohydrate metabolic process [GO:0005975] locus:2136027; AT4G24450 water dikinase NA NA NA NA NA NA NA ENOG411E1RV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0231100 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q67X39 Q67X39_ORYSJ Os06g0231100 OsJ_20695 OSNPB_060231100 P0525F01.35 ENOG411E1RW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein NB-ARC domain containing protein (NB-ARC domain, putative) (Os11g0238000 protein),NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (Os11g0237600 protein) (cDNA, clone: J075186H09, full insert sequence),NB-ARC domain containing protein (NB-ARC domain, putative) (Os11g0237900 protein),Os11g0238700 protein Q53KR9,Q53KR6,Q53KR8,A0A0P0Y0U0 Q53KR9_ORYSJ,Q53KR6_ORYSJ,Q53KR8_ORYSJ,A0A0P0Y0U0_ORYSJ Os11g0238000 LOC_Os11g13440 OsJ_33478 OSNPB_110238000,Os11g0237600 LOC_Os11g13410 OsJ_33475 OSNPB_110237600,Os11g0237900 LOC_Os11g13430 Os11g0237900 OsJ_33477 OSNPB_110237900,Os11g0238700 OSNPB_110238700 ENOG411E1RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family OSJNBa0086O06.18 protein (Os04g0590400 protein) Q7XLZ1 Q7XLZ1_ORYSJ Os04g0590400 OsJ_15968 OSJNBa0086O06.18 OSNPB_040590400 ENOG411E1RQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0129800 protein A0A0P0XYM6 A0A0P0XYM6_ORYSJ Os11g0129800 OSNPB_110129800 ENOG411E1RR MJB21.7 Q9FMZ4,Q1G3M3,A0A1I9LPB7,A0A1P8BGY6 Y5270_ARATH,Y3918_ARATH,A0A1I9LPB7_ARATH,A0A1P8BGY6_ARATH B3 domain-containing protein At5g42700,B3 domain-containing protein At3g19184,AP2/B3-like transcriptional factor family protein 24058,31647,32340,21015 B3 domain-containing protein At5g42700,B3 domain-containing protein At3g19184,AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2165497;,locus:1009023252; AT5G42700,AT3G19184 B3 domain-containing protein B3 domain-containing protein Os06g0194400 Q69V36 Y6944_ORYSJ Os06g0194400 LOC_Os06g09420 P0648E08.15 P0698A06.41 ENOG411E1RS Q84TJ4,A0A1I9LSE6 Q84TJ4_ARATH,A0A1I9LSE6_ARATH Golgin (Uncharacterized protein At3g50430),Golgin 74014,55309 Golgin (Uncharacterized protein At3g50430),Golgin integral component of membrane [GO:0016021] locus:2098675; AT3G50430 NA Os07g0120700 protein (Fragment) Q0D8X8 Q0D8X8_ORYSJ Os07g0120700 Os07g0120700 OSNPB_070120700 ENOG411E1RX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucose 6-dehydrogenase UDP-glucose 6-dehydrogenase 2 (UDP-Glc dehydrogenase 2) (UDP-GlcDH 2) (UDPGDH 2) (EC 1.1.1.22) (Os-UGD2),Os04g0581600 protein (Fragment) B7F958,A0A0P0WE11 UGDH2_ORYSJ,A0A0P0WE11_ORYSJ UGD2 Os03g0604200 LOC_Os03g40720 OSJNBa0004G03.9,Os04g0581600 OSNPB_040581600 FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. {ECO:0000250}. ENOG411E1RY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Carboxypeptidase (EC 3.4.16.-) Q75HY1,Q75I01 Q75HY1_ORYSJ,Q75I01_ORYSJ Os05g0582600 Os05g0582600 OJ1651_G11.13 OSJNBb0035N21.14 OSNPB_050582600,Os05g0582500 OJ1651_G11.12 OSJNBb0035N21.15 OSNPB_050582500 ENOG411E1RZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os02g0725000 protein (cDNA clone:J013044J15, full insert sequence) Q6Z5K6 Q6Z5K6_ORYSJ Os02g0725000 Os02g0725000 OJ1124_G07.9 OsJ_08206 OSNPB_020725000 P0685G12.39 ENOG411EK3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EBTY Q9SR44 LHTL2_ARATH Lysine histidine transporter-like 2 FUNCTION: Amino acid transporter. {ECO:0000250}. 49421 Lysine histidine transporter-like 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2008605; AT1G67640 Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EBTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os04g0286800 protein A0A0P0W822 A0A0P0W822_ORYSJ Os04g0286800 OSNPB_040286800 ENOG411EBTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os01g0368700 protein (Fragment) A0A0P0V2H5 A0A0P0V2H5_ORYSJ Os01g0368700 OSNPB_010368700 ENOG411EBTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAE1/Type III polyketide synthase-like protein NA NA NA NA NA NA NA ENOG411EBTP LAZ5 O48573,O65507,A0A1P8BGV5,A0A1P8AY38,A0A1P8BES3,A0A1P8BGV4,F4IMF2,F4KD45 LAZ5_ARATH,O65507_ARATH,A0A1P8BGV5_ARATH,A0A1P8AY38_ARATH,A0A1P8BES3_ARATH,A0A1P8BGV4_ARATH,F4IMF2_ARATH,F4KD45_ARATH Disease resistance protein LAZ5 (Protein LAZARUS 5) (Protein TOLERANCE TO TOBACCO RINGSPOT VIRUS 1),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family FUNCTION: TIR-NB-LRR receptor-like protein that may play a role in plant innate immunity. May trigger hypersensitive programmed cell death in response to pathogen attack (PubMed:20949080). Involved in tolerance to tobacco ringspot virus (TRSV) (PubMed:22057987). {ECO:0000269|PubMed:20949080, ECO:0000269|PubMed:22057987}. MISCELLANEOUS: Plants over-expressing LAZ5 exhibit hypersensitive cell death and do not survive (PubMed:20949080). In the ecotype Estland (Est), which shows a sensitive response upon tobacco ringspot virus (TRSV) inoculation, the TTR1 allele is involved in the development of lethal systemic necrosis in response to TRSV (PubMed:22057987). {ECO:0000269|PubMed:20949080, ECO:0000269|PubMed:22057987}. 133398,134077,114792,126725,103976,113750,136023,142573 Disease resistance protein LAZ5 (Protein LAZARUS 5) (Protein TOLERANCE TO TOBACCO RINGSPOT VIRUS 1),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein),Disease resistance protein (TIR-NBS-LRR class) family ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to virus [GO:0051607]; plant-type hypersensitive response [GO:0009626]; response to virus [GO:0009615]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531],ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2155322;,locus:2122209;,locus:2827639;,locus:2153363; AT5G44870,AT4G36150,AT2G17060,AT5G45200 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EBTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 NA NA NA NA NA NA NA ENOG411EBTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NACHT domain Os08g0296700 protein (Putative bacterial blight-resistance protein Xa1) Q69QX4 Q69QX4_ORYSJ P0024C06.103 Os08g0296700 OSNPB_080296700 ENOG411EBTU Q5PNZ0 GDL77_ARATH GDSL esterase/lipase At5g18430 (EC 3.1.1.-) (Extracellular lipase At5g18430) ARA:GQT-2526-MONOMER; 3.1.1.- 40123 GDSL esterase/lipase At5g18430 (EC 3.1.1.-) (Extracellular lipase At5g18430) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2146223; AT5G18430 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EBTT NPY4 O64814,A0A1P8B343 NPY4_ARATH,A0A1P8B343_ARATH BTB/POZ domain-containing protein NPY4 (Protein NAKED PINS IN YUC MUTANTS 4),Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses. {ECO:0000250, ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. PATHWAY: Protein modification; protein ubiquitination. 54954,41890 BTB/POZ domain-containing protein NPY4 (Protein NAKED PINS IN YUC MUTANTS 4),Phototropic-responsive NPH3 family protein cell periphery [GO:0071944]; positive gravitropism [GO:0009958]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in the hypocotyl cells that would differentiate into vascular bundles. Highly expressed in primary root tips. {ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. locus:2045314; AT2G23050 naked pins in yuc mutants 4 NA NA NA NA NA NA NA ENOG411EBTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EBTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, putative, expressed (Os03g0178300 protein) (cDNA clone:J023090C05, full insert sequence) Q10QZ0 Q10QZ0_ORYSJ Os03g0178300 LOC_Os03g08090 OSNPB_030178300 ENOG411EBTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0517700 protein (Fragment) A0A0P0WCG7 A0A0P0WCG7_ORYSJ Os04g0517700 OSNPB_040517700 ENOG411EBTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PbH1 NA NA NA NA NA NA NA ENOG411EBTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CYCc NA NA NA NA NA NA NA ENOG411EBTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cullin protein neddylation domain Cullin-like protein (Os01g0369200 protein) (Putative CUL1),Os05g0193900 protein,Os12g0236250 protein,Os01g0706200 protein Q93VL5,A0A0P0WIW4,A0A0P0Y8F5,A0A0P0V765 Q93VL5_ORYSJ,A0A0P0WIW4_ORYSJ,A0A0P0Y8F5_ORYSJ,A0A0P0V765_ORYSJ P0560B06.32 Os01g0369200 OsJ_01787 OSNPB_010369200 P0043B10.35,Os05g0193900 OSNPB_050193900,Os12g0236250 OSNPB_120236250,Os01g0706200 OSNPB_010706200 ENOG411EBTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chloroplast thylakoid protein kinase STN7 NA NA NA NA NA NA NA ENOG411EBTC Q9SH13,Q9T0E4,Q9T0E2,A0A1P8ATV5,F4JPR8 FB90_ARATH,FBK81_ARATH,FK124_ARATH,A0A1P8ATV5_ARATH,F4JPR8_ARATH Putative F-box protein At1g77880,Putative F-box/kelch-repeat protein At4g11770,Putative F-box/kelch-repeat protein At4g11750,Galactose oxidase/kelch repeat superfamily protein 15288,45990,44789,8089,32572 Putative F-box protein At1g77880,Putative F-box/kelch-repeat protein At4g11770,Putative F-box/kelch-repeat protein At4g11750,Galactose oxidase/kelch repeat superfamily protein locus:2029481;,locus:2139722;,locus:2139687;,locus:1005716195; AT1G77880,AT4G11770,AT4G11750,AT4G11745 FBOX NA NA NA NA NA NA NA ENOG411EBTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWD domain NA NA NA NA NA NA NA ENOG411EBTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Na P-type ATPase NA NA NA NA NA NA NA ENOG411EBTD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) Os12g0417000 protein (Fragment),Os10g0195100 protein (Fragment),Os10g0409366 protein Q0INP2,A0A0P0XSD0,A0A0P0XUK3 Q0INP2_ORYSJ,A0A0P0XSD0_ORYSJ,A0A0P0XUK3_ORYSJ Os12g0417000 Os12g0417000 OSNPB_120417000,Os10g0195100 OSNPB_100195100,Os10g0409366 OSNPB_100409366 ENOG411EBTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EBTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CPDc NA NA NA NA NA NA NA ENOG411EBT9 MLP329,MLP328,MLP3,MLP1,MLP2,dl3070w Q9ZVF2,Q9ZVF3,Q39133,Q39132,Q9LIN0,Q96274,O23267,Q9LIM9 ML329_ARATH,ML328_ARATH,Q39133_ARATH,Q39132_ARATH,Q9LIN0_ARATH,Q96274_ARATH,O23267_ARATH,Q9LIM9_ARATH MLP-like protein 329,MLP-like protein 328,Major latex protein type3 (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),At1g14950/F10B6_18 (Major latex protein type1) (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Major latex protein, putative (Major latex protein-like) (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative major latex protein),Major latex homologue type2 (Major latex protein-like protein) (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),AT4g14060/dl3070w (Major latex protein like) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Major latex protein-like (Polyketide cyclase/dehydrase and lipid transport superfamily protein) 17602,17513,17879,17892,17791,17316,17773 MLP-like protein 329,MLP-like protein 328,Major latex protein type3 (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),At1g14950/F10B6_18 (Major latex protein type1) (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Major latex protein, putative (Major latex protein-like) (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative major latex protein),Major latex homologue type2 (Major latex protein-like protein) (Major latex-like protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),AT4g14060/dl3070w (Major latex protein like) (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Major latex protein-like (Polyketide cyclase/dehydrase and lipid transport superfamily protein) copper ion binding [GO:0005507]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607]; response to cytokinin [GO:0009735],cytosol [GO:0005829]; copper ion binding [GO:0005507]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607]; response to phenylpropanoid [GO:0080184]; response to zinc ion [GO:0010043]; vegetative to reproductive phase transition of meristem [GO:0010228],defense response [GO:0006952]; response to biotic stimulus [GO:0009607],defense response [GO:0006952]; response to biotic stimulus [GO:0009607]; response to cytokinin [GO:0009735] locus:2049592;,locus:2049577;,locus:2006797;,locus:2006812;,locus:2079301;,locus:2006757;,locus:2129366;,locus:2079226; AT2G01530,AT2G01520,AT1G14940,AT1G14950,AT3G26450,AT1G14930,AT4G14060,AT3G26460 Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411EBT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CobQ/CobB/MinD/ParA nucleotide binding domain NA NA NA NA NA NA NA ENOG411EBT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os02g0713500 protein A0A0N7KFZ4 A0A0N7KFZ4_ORYSJ Os02g0713500 OSNPB_020713500 ENOG411EBT0 F11B9.21 Q9C771,O65915,Q0WRG4,F4J687 Q9C771_ARATH,O65915_ARATH,Q0WRG4_ARATH,F4J687_ARATH Myb/SANT-like DNA-binding domain protein (Uncharacterized protein F11B9.21),Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At2g19220),Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At3g11290),Uncharacterized protein 62023,51244,53399,23771 Myb/SANT-like DNA-binding domain protein (Uncharacterized protein F11B9.21),Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At2g19220),Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At3g11290),Uncharacterized protein DNA binding [GO:0003677] locus:2074703;,locus:2047710;,locus:2074673;,locus:2828465; AT3G11310,AT2G19220,AT3G11290,AT3G11300 NA NA NA NA NA NA NA NA ENOG411EBT3 TGG6,TGG4,TGG5,BGLU34 Q9C8K1,Q8GRX1,Q3ECS3,F4HV16 BGL36_ARATH,BGL34_ARATH,BGL35_ARATH,F4HV16_ARATH Putative myrosinase 6 (EC 3.2.1.147) (Beta-glucosidase 36) (AtBGLU36) (Sinigrinase 6) (Thioglucosidase 6),Myrosinase 4 (EC 3.2.1.147) (Beta-glucosidase 34) (AtBGLU34) (EC 3.2.1.21) (Sinigrinase 4) (Thioglucosidase 4),Myrosinase 5 (EC 3.2.1.147) (Beta-glucosidase 35) (AtBGLU35) (EC 3.2.1.21) (Sinigrinase 5) (Thioglucosidase 5),Beta glucosidase 34 FUNCTION: Hydrolyzes sinigrin and, with lower efficiency, p-nitrophenyl beta-D-glucoside. {ECO:0000269|PubMed:19703694}. MISCELLANEOUS: It seems that the absence of a catalytic proton donor in plant myrosinases is not impairing the hydrolysis of glucosinolates. ARA:AT1G51490-MONOMER; R-ATH-189085; 3.2.1.147,3.2.1.147; 3.2.1.21 55527,57542,57468,57443 Putative myrosinase 6 (EC 3.2.1.147) (Beta-glucosidase 36) (AtBGLU36) (Sinigrinase 6) (Thioglucosidase 6),Myrosinase 4 (EC 3.2.1.147) (Beta-glucosidase 34) (AtBGLU34) (EC 3.2.1.21) (Sinigrinase 4) (Thioglucosidase 4),Myrosinase 5 (EC 3.2.1.147) (Beta-glucosidase 35) (AtBGLU35) (EC 3.2.1.21) (Sinigrinase 5) (Thioglucosidase 5),Beta glucosidase 34 beta-glucosidase activity [GO:0008422]; thioglucosidase activity [GO:0019137]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; response to hormone [GO:0009725]; response to salt stress [GO:0009651],beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; thioglucosidase activity [GO:0019137]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; glucosinolate metabolic process [GO:0019760]; response to hormone [GO:0009725]; response to salt stress [GO:0009651],beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; thioglucosidase activity [GO:0019137]; carbohydrate metabolic process [GO:0005975]; glucosinolate catabolic process [GO:0019762]; response to hormone [GO:0009725]; response to salt stress [GO:0009651],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:19703694}. locus:2033910;,locus:2015338;,locus:2033928; AT1G51490,AT1G47600,AT1G51470 glycosyl hydrolase family 1 protein NA NA NA NA NA NA NA ENOG411EBT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyphenol oxidase middle domain NA NA NA NA NA NA NA ENOG411EBT4 Q9SVA1,Q9FI70,Q3ED92,Q9SVA3,O22698,Q67XN8,Q9SVA0 FK100_ARATH,FK122_ARATH,FK127_ARATH,FBK98_ARATH,FBK24_ARATH,FBK99_ARATH,FK101_ARATH F-box/kelch-repeat protein At4g39570,F-box/kelch-repeat protein At5g49000,Putative F-box/kelch-repeat protein At1g19930,F-box/kelch-repeat protein At4g39550,Putative F-box/kelch-repeat protein At1g60570,F-box/kelch-repeat protein At4g39560,F-box/kelch-repeat protein At4g39580 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 45024,42073,38767,44269,43956,29490,42815 F-box/kelch-repeat protein At4g39570,F-box/kelch-repeat protein At5g49000,Putative F-box/kelch-repeat protein At1g19930,F-box/kelch-repeat protein At4g39550,Putative F-box/kelch-repeat protein At1g60570,F-box/kelch-repeat protein At4g39560,F-box/kelch-repeat protein At4g39580 protein ubiquitination [GO:0016567] locus:2122486;,locus:2154404;,locus:2035389;,locus:2122571;,locus:2036561;,locus:2122472;,locus:2122501; AT4G39570,AT5G49000,AT1G19930,AT4G39550,AT1G60570,AT4G39560,AT4G39580 Kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EBT7 SRS4 Q9SI19,A0A1P8AXA0 SRS4_ARATH,A0A1P8AXA0_ARATH Protein SHI RELATED SEQUENCE 4,SHI-related sequence 4 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16740146}. FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. 24879,24709 Protein SHI RELATED SEQUENCE 4,SHI-related sequence 4 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed in cotyledon tips, leaf primordia, hydathodes, stipules, and lateral root primordia and weakly at the edges of petals and sepals. {ECO:0000269|PubMed:21976484}. locus:2053134; AT2G18120 Domain of unknown function (DUF702) NA NA NA NA NA NA NA ENOG411EBT6 NIT1,NIT3,NIT2 P32961,P46010,P32962,Q8LFU8 NRL1_ARATH,NRL3_ARATH,NRL2_ARATH,Q8LFU8_ARATH Nitrilase 1 (EC 3.5.5.1),Nitrilase 3 (EC 3.5.5.1),Nitrilase 2 (EC 3.5.5.1),Nitrilase 1 Insensitive to IAN (auxin precursor)-B. Bartel-1996 FUNCTION: Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid.,FUNCTION: Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid. {ECO:0000269|PubMed:8016109, ECO:0000269|PubMed:8022831}. ARA:AT3G44310-MONOMER;MetaCyc:AT3G44310-MONOMER;,ARA:AT3G44320-MONOMER;MetaCyc:AT3G44320-MONOMER;,ARA:AT3G44300-MONOMER;MetaCyc:AT3G44300-MONOMER; 3.5.5.1; 3.5.5.1 38152,38022,37153,24945 Nitrilase 1 (EC 3.5.5.1),Nitrilase 3 (EC 3.5.5.1),Nitrilase 2 (EC 3.5.5.1),Nitrilase 1 apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; indole-3-acetonitrile nitrilase activity [GO:0080061]; indole-3-acetonitrile nitrile hydratase activity [GO:0080109]; nitrilase activity [GO:0000257]; indoleacetic acid biosynthetic process [GO:0009684],plasma membrane [GO:0005886]; indole-3-acetonitrile nitrilase activity [GO:0080061]; indole-3-acetonitrile nitrile hydratase activity [GO:0080109]; nitrilase activity [GO:0000257]; cellular response to sulfate starvation [GO:0009970]; glucosinolate catabolic process [GO:0019762]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; plasma membrane [GO:0005886]; indole-3-acetonitrile nitrilase activity [GO:0080061]; indole-3-acetonitrile nitrile hydratase activity [GO:0080109]; nitrilase activity [GO:0000257]; indoleacetic acid biosynthetic process [GO:0009684]; response to cadmium ion [GO:0046686],hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810]; nitrogen compound metabolic process [GO:0006807] DEVELOPMENTAL STAGE: Expressed throughout development, but at a very low level during the fruiting stage.,DEVELOPMENTAL STAGE: Barely detectable in young rosettes, but is strongly expressed during bolting, flowering, and especially fruit development. TISSUE SPECIFICITY: Expressed in cotyledons, hypocotyls, leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:8022831}. locus:2095690;,locus:2095700;,locus:2095735; AT3G44310,AT3G44320,AT3G44300 Nitrilase 2 NA NA NA NA NA NA NA ENOG411DS1F T19K24.3 O48574,Q6DBH7 O48574_ARATH,Q6DBH7_ARATH Gb|AAC79135.1 (Polyadenylate-binding protein 1-B-binding protein) (T19K24.3 protein) (Uncharacterized protein At5g44860),At4g19950 (Polyadenylate-binding protein 1-B-binding protein) 35628,35886 Gb|AAC79135.1 (Polyadenylate-binding protein 1-B-binding protein) (T19K24.3 protein) (Uncharacterized protein At5g44860),At4g19950 (Polyadenylate-binding protein 1-B-binding protein) integral component of membrane [GO:0016021] locus:2155307;,locus:2119807; AT5G44860,AT4G19950 NA Os01g0800300 protein (cDNA clone:001-206-C07, full insert sequence) (cDNA clone:J023127J16, full insert sequence) (cDNA clone:J023138D05, full insert sequence) (cDNA clone:J023139J15, full insert sequence) Q8S2H7 Q8S2H7_ORYSJ Os01g0800300 OSNPB_010800300 P0003D09.5 P0691E06.37 ENOG411DTKM ELF3 O82804,Q5Q0C8 ELF3_ARATH,Q5Q0C8_ARATH Protein EARLY FLOWERING 3 (Nematode-responsive protein),EARLY FLOWERING protein early flowering; photoperiod-insensitive; long hypocotyl in light-grown seedlings; conditional circadian dysfunction; lacks trichomes on stems and leaves some trichomes in leaf margins.,early flowering; photoperiod-insensitive; long hypocotyl in light-grown seedlings; conditional circadian dysfunction.,early flowering; photoperiod-insensitive; long hypocotyl in light-grown seedlings; lacks trichomes on stems and leaves some trichomes in leaf margins.,early flowering; photoperiod-insensitive; long hypocotyl in light-grown seedlings. Long hypocotyl; Early flowering-D. Meeks-Wagner-2001 FUNCTION: May be a transcription factor part of a circadian clock input pathway. Acts within a 'zeitnehmer' feedback loop and is involved in its own circadian regulation. Has no role in regulating circadian clock function in the dark. Part of a corepressor complex consisting of ELF4, ELF3, and LUX involved in the transcriptional regulation of APRR9. The activity of the protein may be decreased in long day conditions due to its interaction with phytochrome B (phyB). Can regulate the initiation of flowering independently of phyB. Also involved in responses to nematode parasitism, like the formation of the nematode feeding structure. {ECO:0000269|PubMed:11402161, ECO:0000269|PubMed:22307044, ECO:0000269|PubMed:22327739}. 77206,60192 Protein EARLY FLOWERING 3 (Nematode-responsive protein),EARLY FLOWERING protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; circumnutation [GO:0010031]; photoperiodism, flowering [GO:0048573]; red, far-red light phototransduction [GO:0009585]; regulation of flower development [GO:0009909]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351]; unidimensional cell growth [GO:0009826] locus:2043520;,locus:2094711; AT2G25930,AT3G21320 early flowering Protein HEADING DATE 3B (ELF3-like protein 1) (OsELF3-1) (OsELF3) (Protein HEADING DATE 17),ELF3-like protein 2,Os01g0566050 protein (Fragment) Q9SNQ6,Q657D6,A0A0P0V473 HD3B_ORYSJ,ELF32_ORYSJ,A0A0P0V473_ORYSJ HD3B EF7 ELF3-1 HD17 Os06g0142600 LOC_Os06g05060 OsJ_20086 P0535G04.25,ELF3-2 Os01g0566100 LOC_Os01g38530 OsJ_02258 P0697C12.26,Os01g0566050 OSNPB_010566050 DISRUPTION PHENOTYPE: Late flowering phenotype under short day (SD) and long day (LD) conditions. {ECO:0000269|PubMed:19495721, ECO:0000269|PubMed:22422935, ECO:0000269|PubMed:22912900}. FUNCTION: Involved in the regulation of flowering time under short day (SD) and long day (LD) conditions. Functions as floral promoter by negatively regulating GHD7, a repressor of the photoperiodic control of flowering (PubMed:22399582, PubMed:22422935, PubMed:22912900). Acts as floral activator in the LD photoperiodic pathway (PubMed:22888152). Involved in blue light-induced activation of EHD1 expression to promote flowering under SD conditions (PubMed:22912900). {ECO:0000269|PubMed:22399582, ECO:0000269|PubMed:22422935, ECO:0000269|PubMed:22888152, ECO:0000269|PubMed:22912900}.,FUNCTION: Involved in the regulation of flowering time. {ECO:0000305|PubMed:25757473}. ENOG411DTKN Q9M9A3 Q9M9A3_ARATH At1g49010 (Duplicated homeodomain-like superfamily protein) (F27J15.20) (MYB transcription factor) 34472 At1g49010 (Duplicated homeodomain-like superfamily protein) (F27J15.20) (MYB transcription factor) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] locus:2028461; AT1G49010 Myb-like DNA-binding domain Transcription factor MYBS1 (Myb-related protein S1) (OsMYBS1) (Syringolide-induced protein 1-3-1B) Q8LH59 MYBS1_ORYSJ MYBS1 Os01g0524500 OJ1005_B10.31 OSNPB_010524500 FUNCTION: Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}. ENOG411DTKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP-1/cpn60 chaperonin family 60 kDa chaperonin beta subunit (Os02g0102900 protein) (Putative RuBisCO subunit binding-protein beta subunit, chloroplast) Q6ZFJ9 Q6ZFJ9_ORYSJ Os02g0102900 Os02g0102900 OJ1435_F07.26 OsJ_05004 OSNPB_020102900 ENOG411DTKH Q9LI89 FBK70_ARATH F-box/kelch-repeat protein At3g27150 47182 F-box/kelch-repeat protein At3g27150 cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2095138; AT3G27150 F-box kelch-repeat protein NA NA NA NA NA NA NA ENOG411DTKK SAC8 Q96328,F4J4J9 SAC8_ARATH,F4J4J9_ARATH Phosphoinositide phosphatase SAC8 (AtSAC8) (EC 3.1.3.-) (Protein SUPPRESSOR OF ACTIN 1A) (AtSAC1a) (Protein SUPPRESSOR OF ACTIN 8) (Putative transmembrane protein G5p) (AtG5) (SAC domain protein 8) (SAC1-like protein AtSAC1a),SAC domain-containing protein 8 FUNCTION: Phosphoinositide phosphatase that hydrolyzes PtdIns(3)P and PtdIns(4)P. {ECO:0000269|PubMed:12713536}. ARA:AT3G51830-MONOMER; R-ATH-1483248;R-ATH-1660514; 3.1.3.- 66464,26394 Phosphoinositide phosphatase SAC8 (AtSAC8) (EC 3.1.3.-) (Protein SUPPRESSOR OF ACTIN 1A) (AtSAC1a) (Protein SUPPRESSOR OF ACTIN 8) (Putative transmembrane protein G5p) (AtG5) (SAC domain protein 8) (SAC1-like protein AtSAC1a),SAC domain-containing protein 8 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; phosphatidylinositol phosphate phosphatase activity [GO:0052866],integral component of membrane [GO:0016021]; phosphatidylinositol phosphate phosphatase activity [GO:0052866] TISSUE SPECIFICITY: Ubiquitous with a higher level of expression in young seedlings than in other tissues. {ECO:0000269|PubMed:12713536, ECO:0000269|PubMed:12805586}. locus:2074398; AT3G51830 Phosphatidylinositide phosphatase Os03g0290500 protein (cDNA clone:J023008J23, full insert sequence) Q0DSS8 Q0DSS8_ORYSJ Os03g0290500 Os03g0290500 OSNPB_030290500 ENOG411DTKJ Q9C752,A0A1P8AU58,A0A1P8AU41 Q9C752_ARATH,A0A1P8AU58_ARATH,A0A1P8AU41_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At1g30280) (Uncharacterized protein F12P21.7),Chaperone DnaJ-domain superfamily protein 50707,50347,42750 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At1g30280) (Uncharacterized protein F12P21.7),Chaperone DnaJ-domain superfamily protein vesicle [GO:0031982]; receptor-mediated endocytosis [GO:0006898] locus:2009817; AT1G30280 DnaJ domain NA NA NA NA NA NA NA ENOG411DTKE UPF2 F4IUX6 RENT2_ARATH Regulator of nonsense transcripts UPF2 (Nonsense mRNA reducing factor UPF2) (Up-frameshift suppressor 2 homolog) (AtUpf2) DISRUPTION PHENOTYPE: Seedling lethal. Accumulation of mRNAs with premature termination codons (PTC). Photoperiod-dependent altered development and stress responses; in long days (16 hours light), altered organ morphologies (e.g. epinastic leaves, small rosette size, long seeds, some abnormal flowers and stunted stem growth), disturbed homeostasis of wounding-induced jasmonic acid and pathogen-elicited salicylic acid. Increased resistance to Pseudomonas syringae pv. tomato strain DC3000. {ECO:0000269|PubMed:22353561}. FUNCTION: Recruited by UPF3 associated with the EJC core at the cytoplasmic side of the nuclear envelope and the subsequent formation of an UPF1-UPF2-UPF3 surveillance complex (including UPF1 bound to release factors at the stalled ribosome) is believed to activate NMD. In cooperation with UPF3 stimulates both ATPase and RNA helicase activities of UPF1. Binds spliced mRNA (By similarity). Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by associating with the nuclear exon junction complex (EJC). Required for plant development and adaptation to environmental stresses, including plant defense and response to wounding. {ECO:0000250, ECO:0000269|PubMed:22353561}. R-ATH-975957; 133962 Regulator of nonsense transcripts UPF2 (Nonsense mRNA reducing factor UPF2) (Up-frameshift suppressor 2 homolog) (AtUpf2) cytoplasm [GO:0005737]; exon-exon junction complex [GO:0035145]; nucleolus [GO:0005730]; perinuclear region of cytoplasm [GO:0048471]; polysome [GO:0005844]; mRNA binding [GO:0003729]; defense response to bacterium [GO:0042742]; jasmonic acid mediated signaling pathway [GO:0009867]; long-day photoperiodism [GO:0048571]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; response to wounding [GO:0009611]; salicylic acid mediated signaling pathway [GO:0009863] locus:2056038; AT2G39260 regulator of nonsense transcripts Os02g0631601 protein,Os04g0523350 protein (Fragment) A0A0P0VMD7,A0A0P0WCS0 A0A0P0VMD7_ORYSJ,A0A0P0WCS0_ORYSJ Os02g0631601 OSNPB_020631601,Os04g0523350 OSNPB_040523350 ENOG411DTKD FEI2,FEI1 C0LGL9,C0LGF4,F4I9D5 FEI2_ARATH,FEI1_ARATH,F4I9D5_ARATH LRR receptor-like serine/threonine-protein kinase FEI 2 (EC 2.7.11.1),LRR receptor-like serine/threonine-protein kinase FEI 1 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein DISRUPTION PHENOTYPE: No visible phenotype. Fei1 and fei2 double mutants exhibit disrupted anisotropic expansion (e.g. during hypocotyl elongation), impaired synthesis of cell wall polymers, and abnormal cellulose biosynthesis. {ECO:0000269|PubMed:19017745}. FUNCTION: Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene). {ECO:0000269|PubMed:19017745}. MISCELLANEOUS: 'Fei' means fat in Chinese. 2.7.11.1 64355,64916,65015 LRR receptor-like serine/threonine-protein kinase FEI 2 (EC 2.7.11.1),LRR receptor-like serine/threonine-protein kinase FEI 1 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; cellulose biosynthetic process [GO:0030244]; mucilage biosynthetic process [GO:0010192]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; plant-type cell wall organization [GO:0009664]; unidimensional cell growth [GO:0009826],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cellulose biosynthetic process [GO:0030244],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall organization [GO:0009664]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in the root meristem and elongation zone, and in hypocotyls of etiolated seedlings. {ECO:0000269|PubMed:19017745}. locus:2058759;,locus:2206179; AT2G35620,AT1G31420 LRR receptor-like serine threonine-protein kinase FEI Os03g0266800 protein (Protein kinase, putative, expressed) (cDNA clone:J023120G02, full insert sequence),Os08g0255500 protein,Os10g0428200 protein,Os03g0266800 protein (Fragment) Q10NK4,A0A0P0XDT2,A0A0N7KRT8,A0A0P0VW07 Q10NK4_ORYSJ,A0A0P0XDT2_ORYSJ,A0A0N7KRT8_ORYSJ,A0A0P0VW07_ORYSJ Os03g0266800 LOC_Os03g16010 Os03g0266800 OsJ_10260 OSNPB_030266800,Os08g0255500 OSNPB_080255500,Os10g0428200 OSNPB_100428200,Os03g0266800 OSNPB_030266800 ENOG411DTKG ACS4 Q43309 1A14_ARATH 1-aminocyclopropane-1-carboxylate synthase 4 (ACC synthase 4) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 4) Large cotyledons; Long hypocotyl; Tall inflorescence stems; Elevated ethylene levels-A. Theologis-2009 FUNCTION: 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. MISCELLANEOUS: The stability of ACS proteins, and the regulation of such stability, play a central role in ethylene biosynthesis. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 1/2. MetaCyc:AT2G22810-MONOMER; 4.4.1.14 53795 1-aminocyclopropane-1-carboxylate synthase 4 (ACC synthase 4) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 4) 1-aminocyclopropane-1-carboxylate synthase activity [GO:0016847]; identical protein binding [GO:0042802]; pyridoxal phosphate binding [GO:0030170]; cellular response to iron ion [GO:0071281]; ethylene biosynthetic process [GO:0009693]; fruit ripening [GO:0009835] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:7642574}. locus:2059170; AT2G22810 1-aminocyclopropane-1-carboxylate synthase 1-aminocyclopropane-1-carboxylate synthase 1 (ACC synthase 1) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 1) Q10DK7 1A11_ORYSJ ACC1 Os03g0727600 LOC_Os03g51740 FUNCTION: Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. ENOG411DTKF EXO70C2,ATEXO70C1 Q9FFX6,Q9FY95 Q9FFX6_ARATH,Q9FY95_ARATH Exocyst subunit exo70 family protein C2 (Leucine zipper protein-like) (Putative leucine zipper protein),Exocyst subunit exo70 family protein C1 (Uncharacterized protein T19L5_110) Male gametophyte defective; Homozygotes are viable: Short roots; Slow growth; Reduced fertility-C. Liu-2010 R-ATH-5620916; 79766,75006 Exocyst subunit exo70 family protein C2 (Leucine zipper protein-like) (Putative leucine zipper protein),Exocyst subunit exo70 family protein C1 (Uncharacterized protein T19L5_110) cytosol [GO:0005829]; exocyst [GO:0000145]; nucleus [GO:0005634]; exocytosis [GO:0006887],exocyst [GO:0000145]; pollen tube [GO:0090406]; exocytosis [GO:0006887] locus:2159058;,locus:2179847; AT5G13990,AT5G13150 exocyst complex Exo70 exocyst complex subunit family protein, expressed (Os11g0167600 protein),Os12g0165500 protein (Os12g0165600 protein) (Fragment) Q53PU2,C7JA30 Q53PU2_ORYSJ,C7JA30_ORYSJ LOC_Os11g06700 Os11g0167600 OsJ_33098 OSNPB_110167600,Os12g0165600 Os12g0165500 OSNPB_120165600 ENOG411DTKA ENT1,ETN8 Q8VXY7,Q84XI3 ENT1_ARATH,ENT8_ARATH Equilibrative nucleotide transporter 1 (AtENT1) (Nucleoside transporter ENT1),Equilibrative nucleotide transporter 8 (AtENT8) (Nucleoside transporter ENT8) FUNCTION: Nucleoside transporter involved in adenosine transport and required for nucleotide metabolism which influences growth and pollen germination. Has high affinity for adenosine when expressed in a heterologous system (yeast). {ECO:0000269|PubMed:11749958, ECO:0000269|PubMed:15228386, ECO:0000269|PubMed:21642237}.,FUNCTION: May be involved in nucleoside transport. {ECO:0000250}. MISCELLANEOUS: Plants over-expressing ENT1 have decreased leaf content of adenosine and show growth deficiencies. Plants silencing ENT1 have increased leaf content of adenosine and decreased rate of pollen germination. {ECO:0000305|PubMed:21642237}. 49344,43345 Equilibrative nucleotide transporter 1 (AtENT1) (Nucleoside transporter ENT1),Equilibrative nucleotide transporter 8 (AtENT8) (Nucleoside transporter ENT8) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; nucleoside transmembrane transporter activity [GO:0005337],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nucleoside transmembrane transporter activity [GO:0005337] TISSUE SPECIFICITY: In young seedlings, expressed in root elongation zone, root cortex, root-hair, at the transition to the shoot and cotyledons. Expressed in hydathodes of fully developed leaves and pollen. {ECO:0000269|PubMed:12810710}.,TISSUE SPECIFICITY: Expressed in stems, flowers and siliques. {ECO:0000269|PubMed:12810710}. locus:2016119;,locus:2196070; AT1G70330,AT1G02630 equilibrative nucleoside transporter Os08g0205200 protein (Fragment) A0A0P0XCV7 A0A0P0XCV7_ORYSJ Os08g0205200 OSNPB_080205200 ENOG411DTKC FAD6 P46312 FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic (EC 1.14.19.23) Chlorotic leaves and slow growth at low temperature; Sensitive to salt stress; Low trienoic fatty acid levels; Elevated monounsaturated fatty acid levels-C. Somerville-1994 FUNCTION: Chloroplast omega-6 fatty acid desaturase introduces the second double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol. {ECO:0000269|PubMed:7846158}. PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. MetaCyc:AT4G30950-MONOMER; 1.14.19.23 51226 Omega-6 fatty acid desaturase, chloroplastic (EC 1.14.19.23) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; protein domain specific binding [GO:0019904]; fatty acid biosynthetic process [GO:0006633]; photoinhibition [GO:0010205]; unsaturated fatty acid biosynthetic process [GO:0006636] DEVELOPMENTAL STAGE: Highest levels found in expanding leaves. {ECO:0000269|PubMed:7846158}. locus:2126734; AT4G30950 Omega-6 fatty acid desaturase Os08g0440900 protein (Fragment) Q0J5E5 Q0J5E5_ORYSJ Os08g0440900 Os08g0440900 OSNPB_080440900 ENOG411DTKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) A0A0P0XEA0 A0A0P0XEA0_ORYSJ Os08g0240500 OSNPB_080240500 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DTKY Q9LVV5 TL15B_ARATH Thylakoid lumenal 15.0 kDa protein 2, chloroplastic 24569 Thylakoid lumenal 15.0 kDa protein 2, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977] locus:2168362; AT5G52970 15.0 kDa protein Os07g0534000 protein (Fragment) A0A0P0X7D0 A0A0P0X7D0_ORYSJ Os07g0534000 OSNPB_070534000 ENOG411DTKX APF2,ASPG1,F15G16.210 Q9LNJ3,Q9LS40,Q9M356,Q9C6M0 APF2_ARATH,ASPG1_ARATH,Q9M356_ARATH,Q9C6M0_ARATH Aspartyl protease family protein 2 (EC 3.4.23.-),Protein ASPARTIC PROTEASE IN GUARD CELL 1 (AtASPG1) (EC 3.4.23.-),Eukaryotic aspartyl protease family protein (Uncharacterized protein F15G16.210),Eukaryotic aspartyl protease family protein (Uncharacterized protein At1g25510) (Uncharacterized protein F2J7.6) DISRUPTION PHENOTYPE: No effect on stomatal closure. {ECO:0000269|PubMed:22268147}. FUNCTION: Aspartyl protease. Not able to cleave BAG6. {ECO:0000269|PubMed:26739014}.,FUNCTION: Aspartic protease involved in drought avoidance through abscisic acid signaling. {ECO:0000269|PubMed:22268147}. 3.4.23.- 52175,53234,51461,51990 Aspartyl protease family protein 2 (EC 3.4.23.-),Protein ASPARTIC PROTEASE IN GUARD CELL 1 (AtASPG1) (EC 3.4.23.-),Eukaryotic aspartyl protease family protein (Uncharacterized protein F15G16.210),Eukaryotic aspartyl protease family protein (Uncharacterized protein At1g25510) (Uncharacterized protein F2J7.6) membrane [GO:0016020]; plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; response to karrikin [GO:0080167],endoplasmic reticulum [GO:0005783]; aspartic-type endopeptidase activity [GO:0004190]; aspartic-type peptidase activity [GO:0070001]; DNA binding [GO:0003677]; protein catabolic process [GO:0030163]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; systemic acquired resistance [GO:0009627],plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] TISSUE SPECIFICITY: Expressed in young seedlings, leaves, guard-cells, stems, flowers and siliques, but not in roots or mesophyll cells. {ECO:0000269|PubMed:22268147}. locus:2035297;,locus:2095042;,locus:2076745;,locus:2031225; AT1G01300,AT3G18490,AT3G61820,AT1G25510 aspartic proteinase Os01g0140100 protein (Putative aspartic proteinase nepenthesin I) (cDNA clone:J013170M01, full insert sequence),Os06g0645000 protein Q9AWT3,A0A0P0WZK9 Q9AWT3_ORYSJ,A0A0P0WZK9_ORYSJ Os01g0140100 OsJ_00309 OSNPB_010140100 P0480E02.14,Os06g0645000 OSNPB_060645000 ENOG411DTKZ MYB104,MYB81 Q9SM27,Q9SLH1 MY104_ARATH,Q9SLH1_ARATH Transcription factor MYB104 (Myb-related protein 104) (AtMYB104),Myb domain protein 81 (Myb family transcription factor) 43513,48220 Transcription factor MYB104 (Myb-related protein 104) (AtMYB104),Myb domain protein 81 (Myb family transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2039478;,locus:2059329; AT2G26950,AT2G26960 transcription factor NA NA NA NA NA NA NA ENOG411DTKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative lysophospholipase Os01g0317800 protein (Phospholipase-like protein) (cDNA clone:001-204-G01, full insert sequence),Os01g0317500 protein,Os01g0318000 protein (Fragment) Q94D81,Q0JN82,A0A0N7KCU9 Q94D81_ORYSJ,Q0JN82_ORYSJ,A0A0N7KCU9_ORYSJ Os01g0317800 Os01g0317800 B1153F04.4 OsJ_01509 OSNPB_010317800 P0028G04.28,Os01g0317500 Os01g0317500 OSNPB_010317500,Os01g0318000 OSNPB_010318000 ENOG411DTKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sugar transmembrane transporter activity Bidirectional sugar transporter SWEET12 (OsSWEET12) Q10LI8 SWT12_ORYSJ SWEET12 Os03g0347500 LOC_Os03g22590 OsJ_10824 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.; FUNCTION: Confers blight susceptibility (PubMed:25988582). Confers TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae (PubMed:23879865). {ECO:0000269|PubMed:23879865, ECO:0000303|PubMed:25988582}. ENOG411DTKW AAO4,AAO2,AAO1,AAO3 Q7G191,Q7G192,Q7G193,Q7G9P4,A0A1P8AZK7,A0A1P8AZL3,A0A1P8AZL6,F4HXK3 ALDO4_ARATH,ALDO2_ARATH,ALDO1_ARATH,ALDO3_ARATH,A0A1P8AZK7_ARATH,A0A1P8AZL3_ARATH,A0A1P8AZL6_ARATH,F4HXK3_ARATH Benzaldehyde dehydrogenase (NAD(+)) (EC 1.2.1.28) (Aldehyde oxidase 4) (AO-4) (AtAO-4) (AtAO2) (Indole-3-acetaldehyde oxidase) (IAA oxidase) (EC 1.2.3.7),Indole-3-acetaldehyde oxidase (IAA oxidase) (EC 1.2.3.7) (Aldehyde oxidase 2) (AO-2) (AtAO-2) (AtAO3),Indole-3-acetaldehyde oxidase (IAA oxidase) (EC 1.2.3.7) (Aldehyde oxidase 1) (AO-1) (AtAO-1) (AtAO1),Abscisic-aldehyde oxidase (EC 1.2.3.14) (Aldehyde oxidase 3) (AO-3) (AtAO-3) (AtAO4) (Indole-3-acetaldehyde oxidase) (IAA oxidase) (EC 1.2.3.7),Abscisic aldehyde oxidase 3,Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein DISRUPTION PHENOTYPE: Plants have normal abscisic acid (ABA) levels, normal germination and are not affected in abscisic aldehyde oxidase activity in siliques, dry seeds and leaves. Reduced levels of benzoic acid (BA), 3-benzoyloxypropylglucosinolate and 4-benzoyloxybutylglucosinolate in seeds. {ECO:0000269|PubMed:15574845, ECO:0000269|PubMed:19297586}.,DISRUPTION PHENOTYPE: Impaired abscisic acid (ABA) biosynthesis. {ECO:0000269|PubMed:16930325}. The endogenous levels of ABA are significantly lower than those of the aao3 single mutant.,No significant changes in ABA levels were observed.,Reduced Levels of Total BA and of Benzoylated Glucosinolates,In the mutant the ABA levels are reduced to around 20% of those of wild type.,The activity of ABA oxidase (ABAO) is dramatically reduced in the siliques and dry seeds of the mutant.,Increased susceptibility to P. irregulare compared with the wild type.,Mutant able to germinate and develop green cotyledons under inhibitory concentrations of NaCl.,Approximately 40% of mutant seeds germinate after far red/red light treatment whereas wild type germination was suppressed almost entirely.,In the mutant the ABA levels are reduced to around 50-60% of those of wild type. Wilty leaves; Low ABA levels; Germination resistant to uniconazole (inhibitor of GA biosynthesis)-T. Koshiba-2000 FUNCTION: Involved in the accumulation of benzoic acid (BA) in siliques. {ECO:0000269|PubMed:19297586}.,FUNCTION: In higher plant aldehyde oxidases (AO) appear to be homo- and heterodimeric assemblies of AO subunits with probably different physiological functions. In vitro, AO-gamma uses heptaldehyde, benzaldehyde, naphthaldehyde and cinnamaldehyde as substrates; AO-beta uses indole-3-acetaldehyde (IAAld), indole-3-aldehyde (IAld) and naphtaldehyde; the AAO2-AAO3 dimer uses abscisic aldehyde.,FUNCTION: In higher plants aldehyde oxidases (AO) appear to be homo- and heterodimeric assemblies of AO subunits with probably different physiological functions. AO-alpha may be involved in the biosynthesis of auxin, and in biosynthesis of abscisic acid (ABA) in seeds. In vitro, AO-alpha uses heptaldehyde, protocatechualdehyde, benzaldehyde, indole-3-aldehyde (IAld), indole-3-acetaldehyde (IAAld), cinnamaldehyde and citral as substrates; AO-beta uses IAAld, IAld and naphtaldehyde as substrates. {ECO:0000269|PubMed:9489015}.,FUNCTION: In higher plants aldehyde oxidases (AO) appear to be homo- and heterodimeric assemblies of AO subunits with probably different physiological functions. AO-delta seems to be involved in the last step of abscisic acid biosynthesis, at least in leaves and seeds. In vitro, AO-delta oxidizes abscisic aldehyde to abscisic acid (ABA). In vitro, AO-delta also uses indole-3-aldehyde (IAld), benzaldehyde, 1-naphthaldehyde and cinnamaldehyde as substrate; the AAO2-AAO3 dimer also uses abscisic aldehyde as substrate. {ECO:0000269|PubMed:10972874, ECO:0000269|PubMed:11050171, ECO:0000269|PubMed:15122034, ECO:0000269|PubMed:15574845, ECO:0000269|PubMed:16930325}. MISCELLANEOUS: In vitro, cannot discriminate between (+) and (-) enantiomers of abscisic acid and leads respectively to (+) and (-) cis-ABA. ARA:AT3G43600-MONOMER;MetaCyc:AT3G43600-MONOMER;,ARA:AT5G20960-MONOMER;MetaCyc:AT5G20960-MONOMER;,ARA:AT2G27150-MONOMER;MetaCyc:AT2G27150-MONOMER; R-ATH-964975; 1.2.3.1;,1.2.3.14; 1.2.1.28; 1.2.3.7,1.2.3.7,1.2.3.14; 1.2.3.7 147304,144580,149554,146701,134265,117364,129800,9492 Benzaldehyde dehydrogenase (NAD(+)) (EC 1.2.1.28) (Aldehyde oxidase 4) (AO-4) (AtAO-4) (AtAO2) (Indole-3-acetaldehyde oxidase) (IAA oxidase) (EC 1.2.3.7),Indole-3-acetaldehyde oxidase (IAA oxidase) (EC 1.2.3.7) (Aldehyde oxidase 2) (AO-2) (AtAO-2) (AtAO3),Indole-3-acetaldehyde oxidase (IAA oxidase) (EC 1.2.3.7) (Aldehyde oxidase 1) (AO-1) (AtAO-1) (AtAO1),Abscisic-aldehyde oxidase (EC 1.2.3.14) (Aldehyde oxidase 3) (AO-3) (AtAO-3) (AtAO4) (Indole-3-acetaldehyde oxidase) (IAA oxidase) (EC 1.2.3.7),Abscisic aldehyde oxidase 3,Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein cytosol [GO:0005829]; 2 iron, 2 sulfur cluster binding [GO:0051537]; aryl-aldehyde oxidase activity [GO:0018488]; benzaldehyde dehydrogenase (NAD+) activity [GO:0018479]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; indole-3-acetaldehyde oxidase activity [GO:0050302]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; abscisic acid biosynthetic process [GO:0009688]; auxin biosynthetic process [GO:0009851]; glucosinolate metabolic process [GO:0019760],cytosol [GO:0005829]; 2 iron, 2 sulfur cluster binding [GO:0051537]; aldehyde oxidase activity [GO:0004031]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; indole-3-acetaldehyde oxidase activity [GO:0050302]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; abscisic acid biosynthetic process [GO:0009688]; auxin biosynthetic process [GO:0009851],cytosol [GO:0005829]; 2 iron, 2 sulfur cluster binding [GO:0051537]; abscisic aldehyde oxidase activity [GO:0010293]; aldehyde oxidase activity [GO:0004031]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; indole-3-acetaldehyde oxidase activity [GO:0050302]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; ubiquitin protein ligase binding [GO:0031625]; abscisic acid biosynthetic process [GO:0009688]; auxin biosynthetic process [GO:0009851],2 iron, 2 sulfur cluster binding [GO:0051537]; flavin adenine dinucleotide binding [GO:0050660]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614],oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Transcripts expressed at high levels in developing siliques and at low levels in dry seeds. {ECO:0000269|PubMed:10972874, ECO:0000269|PubMed:15574845}.,TISSUE SPECIFICITY: Weakly expressed in roots, leaves and seedlings. In seedlings, mostly expressed in lower part of hypocotyls. Detectable in seeds and mature siliques at low levels. {ECO:0000269|PubMed:10972874, ECO:0000269|PubMed:15574845, ECO:0000269|PubMed:9489015, ECO:0000269|PubMed:9615466, ECO:0000269|PubMed:9655945}.,TISSUE SPECIFICITY: Predominantly expressed in roots, seedlings, mature siliques and seeds, and to lower extent in stems and rosettes. In seedlings, mostly expressed in lower part of hypocotyls and roots. {ECO:0000269|PubMed:10972874, ECO:0000269|PubMed:15574845, ECO:0000269|PubMed:9489015, ECO:0000269|PubMed:9615466, ECO:0000269|PubMed:9655945}.,TISSUE SPECIFICITY: Expressed in vascular tissues of all organs, particularly in phloem companion cells and xylem parenchymatic cells. Highly expressed in roots and rosettes, and to lower extent in seedlings, stems and flowers. Expressed at very low levels in siliques and dry seeds. Also detected in root dividing cells (tips and primordia), in mesophyll cells and inside the guard cells. {ECO:0000269|PubMed:10972874, ECO:0000269|PubMed:11050171, ECO:0000269|PubMed:15064376, ECO:0000269|PubMed:15122034, ECO:0000269|PubMed:15574845, ECO:0000269|PubMed:9489015, ECO:0000269|PubMed:9615466}. locus:2197798;,locus:2079834;,locus:2147127;,locus:2045149;,locus:2196095; AT1G04580,AT3G43600,AT5G20960,AT2G27150,AT1G02590 aldehyde oxidase Putative aldehyde oxidase-like protein,Probable aldehyde oxidase 2 (AO-2) (EC 1.2.3.1),Probable aldehyde oxidase 3 (AO-3) (EC 1.2.3.1),Probable aldehyde oxidase 1 (AO-1) (EC 1.2.3.1),Probable aldehyde oxidase 4 (AO-4) (EC 1.2.3.1),Aldehyde oxidase-like (Os07g0282500 protein),Os03g0790900 protein (Fragment),Os07g0282300 protein (cDNA clone:J023142J16, full insert sequence),Os03g0798000 protein (Os03g0798101 protein),Os07g0281800 protein (Fragment),Os07g0282401 protein,Os10g0138100 protein (Fragment),Os03g0798000 protein (Fragment) Q6Z351,Q852M1,Q852M2,Q7XH05,Q69R21,Q6Z5T5,Q0DMV6,Q0D780,Q0DMQ7,Q0D782,A0A0P0W4P0,A0A0P0X5J2,A0A0P0W4J1,A0A0P0XRW2,A0A0P0W449,A0A0P0W429 ALDOL_ORYSJ,ALDO2_ORYSJ,ALDO3_ORYSJ,ALDO1_ORYSJ,ALDO4_ORYSJ,Q6Z5T5_ORYSJ,Q0DMV6_ORYSJ,Q0D780_ORYSJ,Q0DMQ7_ORYSJ,Q0D782_ORYSJ,A0A0P0W4P0_ORYSJ,A0A0P0X5J2_ORYSJ,A0A0P0W4J1_ORYSJ,A0A0P0XRW2_ORYSJ,A0A0P0W449_ORYSJ,A0A0P0W429_ORYSJ Os07g0281700 Os07g0281800 LOC_Os07g18120 P0557D09.31,Os03g0790900 LOC_Os03g57690 OSJNBa0087O09.20,Os03g0790700 LOC_Os03g57680 OSJNBa0087O09.19,Os10g0138100 LOC_Os10g04860 OsJ_30665 OSJNAa0087H07.7,Os07g0282300 LOC_Os07g18154 P0557D09.36,Os07g0282500 OSJNBa0018O23.2 OSNPB_070282500 P0557D09.38,Os03g0790900 OSNPB_030790900,Os07g0282300 Os07g0282300 OSNPB_070282300,Os03g0798000 Os03g0798101 OSNPB_030798101,Os07g0281800 Os07g0281800 OSNPB_070281800,Os07g0282401 OSNPB_070282401,Os10g0138100 OSNPB_100138100,Os03g0798000 OSNPB_030798000 ENOG411DTKV Q9FZD1 PPR58_ARATH Pentatricopeptide repeat-containing protein At1g26460, mitochondrial 70235 Pentatricopeptide repeat-containing protein At1g26460, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2198005; AT1G26460 Pentatricopeptide repeat-containing protein Os07g0599000 protein (Pentatricopeptide (PPR) repeat-containing protein-like protein) Q7XAM2 Q7XAM2_ORYSJ OJ1634_B10.107 Os07g0599000 OSNPB_070599000 ENOG411DTKQ MYB124,MYB88,FLP Q94FL6,F4IRB4,A0A1P8AS18,A0A1P8B2X7 MY124_ARATH,MYB88_ARATH,A0A1P8AS18_ARATH,A0A1P8B2X7_ARATH Transcription factor MYB124 (Myb-related protein 124) (AtMYB124) (Protein FOUR LIPS),Transcription factor MYB88 (Myb-related protein 88) (AtMYB88),Duplicated homeodomain-like superfamily protein,Myb domain protein 88 DISRUPTION PHENOTYPE: Abnormal stomatal clusters formation composed by two to four adjacent stomata and some unpaired guard cells originating of extra symmetric divisions in cells with an abnormally persistent guard mother cell (GMC) identity (PubMed:11536724, PubMed:9684356, PubMed:16155180, PubMed:20675570). Abnormal stomatal cluster formation is complemented by FAMA (PubMed:24571519). Increased accumulation of CDKB1-1 in single flp-1 and double flp-1 myb88 mutants (PubMed:20675570). Induction of ectopic precursor cell division and delayed stomatal differentiation. End wall thickenings in all first generation GMCs (PubMed:16155180). Stronger accumulation of stomatal clusters separated by jigsaw-shaped pavement cells with wavy anticlinal walls in dorsiventral (e.g. cotyledons, sepals, and anthers) than in cylindrical organs (e.g. stems, flower stalks, and siliques), where pavement cells are rectangular (PubMed:9684356). Double mutants flp-7 myb88 and flp-1 myb88 have strong defects in stomata repartition with large stomatal clusters formation (PubMed:16155180). Double mutants flp-1 myb88 have increased susceptibility to drought and high salt (NaCl), as well as increased rates of water loss; these phenotypes are associated with reduced accumulation of many typical abiotic stress gene transcripts. Lower stomatal closure in response to abscisic acid (ABA) treatment (PubMed:21105921). Accumulation of CYCA2-3 in newly formed guard cells in flp-1 myb88 double mutant (PubMed:21772250). The double mutants flp-1 myb88 and flp-7 myb88 treated with oryzalin, a microtubule depolymerizing drug, exhibit round-to-oval-shaped single guard cells (sGCs) associated with increased DNA content due to endoreplication leading to 10C DNA levels. The quadruple mutant flp-1 myb88 cdkb1;1 cdkb1;2 has a reduced number of large single guard cells blocked at mitosis, with strongly altered shape and size and characterized by enlarged nucleus due to endomitosis and endocycling, as well as extensive chloroplast replication (PubMed:24123248). The double mutant flp-1 myb88 displays an enhanced stomatal phenotype with more and larger stomatal clusters. Triple mutants cdka;1 flp-1 myb88 don't have guard cells stacks but accumulates sGCs. Accumulation of CDKA-1 in the double mutant flp-1 myb88 (PubMed:24687979). Increased number of ovules produced by the placenta but reduced female fertility due to defective meiotic entry and progression, and subsequent altered embryo sac development, thus leading to reduced seed set (PubMed:22915737). Reduced numbers of lateral roots (LRs). The double mutants flp-1 myb88 and flp-7 myb88 lack lateral roots with reduced PIN3 levels (PubMed:26578065). Gravitropic defects in primary roots associated with a delayed auxin asymmetric redistribution due to reduced PIN3 and PIN7 levels (PubMed:26578169). {ECO:0000269|PubMed:11536724, ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:21105921, ECO:0000269|PubMed:21772250, ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24687979, ECO:0000269|PubMed:26578065, ECO:0000269|PubMed:26578169, ECO:0000269|PubMed:9684356}.,DISRUPTION PHENOTYPE: Double mutants flp-7 myb88 and flp-1 myb88 have strong defects in stomata repartition with large stomatal clusters formation (PubMed:16155180). Increased accumulation of CDKB1-1 in the double mutant flp-1 myb88 (PubMed:20675570). Double mutants flp-1 myb88 have increased susceptibility to drought and high salt (NaCl), as well as increased rates of water loss; these phenotypes are associated with reduced accumulation of many typical abiotic stress gene transcripts. Lower stomatal closure in response to abscisic acid (ABA) treatment (PubMed:21105921). Accumulation of CYCA2-3 in newly formed guard cells in flp-1 myb88 double mutant (PubMed:21772250). The double mutants flp-1 myb88 and flp-7 myb88 treated with oryzalin, a microtubule depolymerizing drug, exhibit round-to-oval-shaped single guard cells (sGCs) associated with increased DNA content due to endoreplication leading to 10C DNA levels. The quadruple mutant flp-1 myb88 cdkb1;1 cdkb1;2 has a reduced number of large single guard cells blocked at mitosis, with strongly altered shape and size and characterized by enlarged nucleus due to endomitosis and endocycling, as well as extensive chloroplast replication (PubMed:24123248). Triple mutants cdka;1 flp-1 myb88 don't have guard cells stacks but accumulates sGCs. Accumulation of CDKA-1 in the double mutant flp-1 myb88 (PubMed:24687979). Increased number of ovules produced by the placenta but reduced female fertility due to defective meiotic entry and progression, and subsequent altered embryo sac development, thus leading to reduced seed set (PubMed:22915737). The double mutants flp-1 myb88 and flp-7 myb88 lack lateral roots with reduced PIN3 levels (PubMed:26578065). Abnormal gravitropic set-point angles (lower than 30 degree) of lateral roots (PubMed:26578169). {ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:21105921, ECO:0000269|PubMed:21772250, ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24687979, ECO:0000269|PubMed:26578065, ECO:0000269|PubMed:26578169}. Abnormal stomatal patterning-F. Sack-2005 FUNCTION: Transcription factor that binds to DNA in promoters cis-regulatory element 5'-GGCGCGC-3' of cell cycle genes, including cyclins, cyclin-dependent kinases (CDKs), and components of the pre-replication complex (PubMed:20675570, PubMed:24687979). Binds to DNA in promoters cis-regulatory element 5'-AGCCG-3' of auxin regulated genes (e.g. PIN3 and PIN7) (PubMed:26578169). Together with FAMA and MYB88, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Represses the expression of the mitosis-inducing factors CDKB1-1 and CDKA-1, specifically required for the last guard mother cells (GMC) symmetric divisions in the stomatal pathway (PubMed:20675570, PubMed:24687979). Represses CYCA2-3 in newly formed guard cells (PubMed:21772250). Together with MYB88, regulates stomata spacing by restricting divisions late in the stomatal cell lineage thus limiting the number of GMC divisions (PubMed:11536724, PubMed:9684356, PubMed:16155180, PubMed:24123248). In collaboration with CDKB1-1 and CDKB1-2, restrict the G1/S transition and chloroplast and nuclear number during stomatal formation, and normally maintain fate and developmental progression throughout the stomatal cell lineage (PubMed:24123248). Also involved in the shape regulation of pavement cells (PubMed:9684356). Involved in sensing and/or transducing abiotic stress (e.g. drought and salt), probably via the positive regulation of NAC019 (PubMed:21105921). Regulates female reproduction being required for entry into megasporogenesis, probably via the regulation of cell cycle genes (PubMed:22915737). Promotes histone H3K27me3 marks and represses stem cell gene expression (PubMed:24654956). Required for lateral roots (LRs) initiation via the regulation of PIN3 expression in an auxin-dependent manner (PubMed:26578065). Involved in responses to gravity stimulation in primary roots by regulating the transcription of PIN3 and PIN7 in gravity-sensing cells, thus modulating auxin asymmetric redistribution (PubMed:26578169). {ECO:0000269|PubMed:11536724, ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:21105921, ECO:0000269|PubMed:21772250, ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956, ECO:0000269|PubMed:24687979, ECO:0000269|PubMed:26578065, ECO:0000269|PubMed:26578169, ECO:0000269|PubMed:9684356}.,FUNCTION: Transcription factor that binds to DNA in promoters cis-regulatory element 5'-GGCGCGC-3' of cell cycle genes, including cyclins, cyclin-dependent kinases (CDKs), and components of the pre-replication complex (PubMed:20675570, PubMed:24687979). Binds to DNA in promoters cis-regulatory element 5'-AGCCG-3' of auxin regulated genes (e.g. PIN3 and PIN7) (PubMed:26578169). Together with FAMA and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Represses the expression of the mitosis-inducing factors CDKB1-1 and CDKA-1, specifically required for the last guard mother cells (GMC) symmetric divisions in the stomatal pathway (PubMed:20675570, PubMed:24687979). Represses CYCA2-3 in newly formed guard cells (PubMed:21772250). Together with MYB88, regulates stomata spacing by restricting divisions late in the stomatal cell lineage thus limiting the number of GMC divisions (PubMed:16155180). In collaboration with CDKB1-1 and CDKB1-2, restrict the G1/S transition and chloroplast and nuclear number during stomatal formation, and normally maintain fate and developmental progression throughout the stomatal cell lineage (PubMed:24123248). Involved in sensing and/or transducing abiotic stress (e.g. drought and salt), probably via the positive regulation of NAC019 (PubMed:21105921). Regulates female reproduction being required for entry into megasporogenesis, probably via the regulation of cell cycle genes (PubMed:22915737). Plays a minor role in lateral roots (LRs) initiation (PubMed:26578065). Involved complementarily in establishing the gravitropic set-point angles of lateral roots by regulating the transcription of PIN3 and PIN7 in gravity-sensing cells of primary and lateral roots (PubMed:26578169). {ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:21105921, ECO:0000269|PubMed:21772250, ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24687979, ECO:0000269|PubMed:26578065, ECO:0000269|PubMed:26578169}. 49600,54508,44511,38586 Transcription factor MYB124 (Myb-related protein 124) (AtMYB124) (Protein FOUR LIPS),Transcription factor MYB88 (Myb-related protein 88) (AtMYB88),Duplicated homeodomain-like superfamily protein,Myb domain protein 88 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; embryo sac development [GO:0009553]; guard cell differentiation [GO:0010052]; guard mother cell cytokinesis [GO:0010235]; guard mother cell differentiation [GO:0010444]; leaf pavement cell development [GO:0090436]; megasporogenesis [GO:0009554]; multicellular organismal water homeostasis [GO:0050891]; positive regulation of histone H3-K27 methylation [GO:0061087]; positive regulation of lateral root development [GO:1901333]; positive regulation of response to salt stress [GO:1901002]; positive regulation of response to water deprivation [GO:1902584]; primary root development [GO:0080022]; regulation of cell cycle G1/S phase transition [GO:1902806]; regulation of DNA endoreduplication [GO:0032875]; regulation of stomatal complex patterning [GO:2000037]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to gravity [GO:0009629]; stomatal complex formation [GO:0010376]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; embryo sac development [GO:0009553]; guard cell differentiation [GO:0010052]; guard mother cell cytokinesis [GO:0010235]; guard mother cell differentiation [GO:0010444]; lateral root development [GO:0048527]; megasporogenesis [GO:0009554]; multicellular organismal water homeostasis [GO:0050891]; positive regulation of lateral root development [GO:1901333]; positive regulation of response to salt stress [GO:1901002]; positive regulation of response to water deprivation [GO:1902584]; regulation of cell cycle G1/S phase transition [GO:1902806]; regulation of DNA endoreduplication [GO:0032875]; regulation of stomatal complex patterning [GO:2000037]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to gravity [GO:0009629]; stomatal complex formation [GO:0010376]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Expressed at the transition to terminal stomatal differentiation, just before and after the symmetric division of stomatal differentiation, being confined to late-stage guard mother cells (GMC) and to young, still differentiating guard cells (PubMed:16155180, PubMed:24571519). Detected in unopened flower buds, at the bases of sepals, petals, and stamens and in the receptacle of carpels, as well as both in style and stigma. Present at strong levels in the placenta within the ovary. Accumulates during ovule development in a dynamic pattern; first observed at high levels in the funiculus once integument outgrowth has begun and persists into later stages. Also expressed in the nucellus of younger ovules, especially in the megaspore mother cell (MMC) and in epidermal cells. Present in integuments, in the endothelial layer and the outer layer of the outer integument, which will form the mucilage-containing seed coat cells (PubMed:22915737). In developing embryos, first detected in cells in the ground tissue meristem at the early heart stage accumulates in the torpedo stage. In mature embryos, expressed in the embryonic hypocotyl and root tip. In seedlings, present first in the lower part of the hypocotyl and in the root tip, and later in petioles of cotyledons, young leaves, and lateral root primordia, near the pericycle. In young plants, strongly expressed in petioles of young leaves and cotyledons, especially in veins, in the basal part of young first leaves and cotyledons, and in root tips of lateral roots. Detected in the phloem, as well as in the cortex of inflorescence stems (PubMed:26391711). In roots, present in the root tip in columella cells, specifically in the lower tier of columella cells, as well as in developing metaxylem (PubMed:26391711, PubMed:26578169). Widely expressed in freshly emerged lateral roots. In elongating lateral roots, confined at high levels transiently in columella cells until differentiation (PubMed:26578169). Expressed at the base of developing flowers, including ovaries. In flowers, detected in ovaries, receptacles, and transiently, in anthers, and, later, in filaments. Also detected in the valve margins and receptacles of siliques and at the joint between the stigma and the style, as well as in the tapetum around pollen grains in maturing anthers (PubMed:26391711). {ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:26391711, ECO:0000269|PubMed:26578169}.,DEVELOPMENTAL STAGE: Accumulates during ovule development. Detected at low levels in ovules and in the embryo sac of stage 13 flowers (PubMed:22915737). Not detected during embryo development. In seedlings and young plants, present in some spots (presumably stomata) in cotyledons and later in veins of hypocotyls as well as of petioles, hydathodes, stipules, in roots and lateral root primordia, and in the lower halves of first leaves. Detected in the phloem, as well as in the cortex of inflorescence stems. In roots, confined in developing xylem cells in the part of the differentiation zone with well-developed root hairs (PubMed:26391711). Present in lateral root tips and subsequently in a larger area. Accumulates in columella cells of lateral roots (PubMed:26578169). Expressed at the base of developing flowers, including ovaries. In flowers, detected in parts of the major stem axis, and in the anther at some stages of development, present in veins of sepals and accumulates progressively in ovaries, filaments, receptacles, and ovules. Also detected in the valve margins and receptacles of siliques and at the joint between the stigma and the style, as well as in the tapetum around pollen grains in maturing anthers (PubMed:26391711). {ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:26391711, ECO:0000269|PubMed:26578169}. TISSUE SPECIFICITY: Expressed in all shoot organs with higher levels in leaves, stems, flowers, siliques and floral buds. Also detected in roots tips. {ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:26391711}.,TISSUE SPECIFICITY: Expressed at low levels in all organs including roots, leaves, hypocotyls stems, flowers, siliques and buds. {ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:26391711}. locus:2012587;,locus:2058827; AT1G14350,AT2G02820 Transcription factor Myb-related protein-like (Os07g0627300 protein) (cDNA clone:001-115-D02, full insert sequence) Q8LI26 Q8LI26_ORYSJ OJ1339_F05.140 P0506F02.108 Os07g0627300 OsJ_25207 OSNPB_070627300 ENOG411DTKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hexokinase Hexokinase-10 (EC 2.7.1.1) (Hexokinase-7) Q2KNB5 HXK10_ORYSJ HXK10 HXK7 Os05g0375100 LOC_Os05g31110 OJ1005_E12.7 FUNCTION: Fructose and glucose phosphorylating enzyme. May be involved in the phosphorylation of glucose during the export from plastids to cytosol (By similarity). {ECO:0000250, ECO:0000269|PubMed:16552590}. MISCELLANEOUS: Expression may pollen-specific. ENOG411DTKS Q9CAT3,B3H5L3 Q9CAT3_ARATH,B3H5L3_ARATH Eukaryotic translation initiation factor 2A (eIF-2A),Eukaryotic translation initiation factor eIF2A family protein The bns-2 mutant has defects in inflorescence development. FUNCTION: Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. {ECO:0000256|PIRNR:PIRNR017222}. 56298,53578 Eukaryotic translation initiation factor 2A (eIF-2A),Eukaryotic translation initiation factor eIF2A family protein cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; tRNA binding [GO:0000049]; regulation of translation [GO:0006417],translation initiation factor activity [GO:0003743] locus:2197284; AT1G73180 eukaryotic translation initiation factor Os02g0606100 protein (Fragment) A0A0P0VLQ3 A0A0P0VLQ3_ORYSJ Os02g0606100 OSNPB_020606100 ENOG411DTKR LCB1 Q94IB8,A0A1P8B789 LCB1_ARATH,A0A1P8B789_ARATH Long chain base biosynthesis protein 1 (AtLCB1) (EC 2.3.1.50) (Protein EMBRYO DEFECTIVE 2779) (Protein FUMONISIN B1 RESISTANT 11),Long-chain base1 DISRUPTION PHENOTYPE: Defective Embryo and pollen lethality. RNAi mutants display plant size reduction, altered leaf morphology and increases in relative amounts of saturated sphingolipid long-chain bases. {ECO:0000269|PubMed:17194770, ECO:0000269|PubMed:18218968}. Embryo lethal. Embryo development was arrested before the globular stage. Null: Complete male gametophyte defective; Female gametophyte defective; Knockdown: Embryo defective-J. Zuo-2008 FUNCTION: Serine palmitoyltransferase (SPT). The heterodimer formed with LCB2 constitutes the catalytic core. Involved in the regulation of the programmed cell death (PCD) signaling pathway. Plays an important role during male gametogenesis and embryogenesis. {ECO:0000269|PubMed:17194770, ECO:0000269|PubMed:18059378, ECO:0000269|PubMed:18218968}. MISCELLANEOUS: The fbr11-1 mutant is incapable of initiating programmed cell death (PCD) after induction by fumonisin B1 (FB1), a specific inhibitor of ceramide synthase. PATHWAY: Lipid metabolism; sphingolipid metabolism. ARA:AT4G36480-MONOMER;MetaCyc:AT4G36480-MONOMER; 2.3.1.50 53141,37929 Long chain base biosynthesis protein 1 (AtLCB1) (EC 2.3.1.50) (Protein EMBRYO DEFECTIVE 2779) (Protein FUMONISIN B1 RESISTANT 11),Long-chain base1 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; pyridoxal phosphate binding [GO:0030170]; serine C-palmitoyltransferase activity [GO:0004758]; cell growth [GO:0016049]; regulation of programmed cell death [GO:0043067]; sphingolipid biosynthetic process [GO:0030148],catalytic activity [GO:0003824]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17194770}. locus:2115350; AT4G36480 serine palmitoyltransferase Long chain base biosynthesis protein 1b (EC 2.3.1.50),Long chain base biosynthesis protein 1a (EC 2.3.1.50),Long chain base biosynthesis protein 1c (EC 2.3.1.50) Q6K8E7,Q10P01,Q7G4P2 LCB1B_ORYSJ,LCB1A_ORYSJ,LCB1C_ORYSJ Os02g0806900 LOC_Os02g56300 OJ1111_C07.25 OsJ_08792,Os03g0252800 LOC_Os03g14800 OsJ_10166,Os10g0189600 LOC_Os10g11200 OsJ_30932 OSJNBa0079H13 FUNCTION: Serine palmitoyltransferase (SPT). The heterodimer formed with LCB2 constitutes the catalytic core (By similarity). {ECO:0000250}. ENOG411DTK9 MO1 A0A1P8B6B9,F4JK86,F4JK85 A0A1P8B6B9_ARATH,F4JK86_ARATH,F4JK85_ARATH FAD/NAD(P)-binding oxidoreductase family protein,Monooxygenase 1 22643,30420,48339 FAD/NAD(P)-binding oxidoreductase family protein,Monooxygenase 1 oxidoreductase activity [GO:0016491],monooxygenase activity [GO:0004497]; secondary metabolite biosynthetic process [GO:0044550],FAD binding [GO:0071949]; monooxygenase activity [GO:0004497] locus:504955430; AT4G15765,AT4G15760 FAD binding domain NA NA NA NA NA NA NA ENOG411DTK8 F21F14.160,F21F14.170 Q9M266,Q9M265,F4IX20 Q9M266_ARATH,Q9M265_ARATH,F4IX20_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g61990) (Uncharacterized protein F21F14.160),AT3g62000/F21F14_170 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein F21F14.170),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ARA:AT3G61990-MONOMER;,ARA:AT3G62000-MONOMER; 32169,30872,39672 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g61990) (Uncharacterized protein F21F14.160),AT3g62000/F21F14_170 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein F21F14.170),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein endoplasmic reticulum [GO:0005783]; O-methyltransferase activity [GO:0008171]; protein methyltransferase activity [GO:0008276],O-methyltransferase activity [GO:0008171] locus:2079557;,locus:2079567; AT3G61990,AT3G62000 o-methyltransferase Os08g0154000 protein (Putative O-methyltransferase) Q84ZM2 Q84ZM2_ORYSJ OJ1066_B03.115 OJ1349_D05.136 Os08g0154000 OSNPB_080154000 ENOG411DTK5 Q8RWA3 Q8RWA3_ARATH Alpha/beta hydrolase family protein (At3g12156) (Uncharacterized protein At3g12150) 40784 Alpha/beta hydrolase family protein (At3g12156) (Uncharacterized protein At3g12150) hydrolase activity [GO:0016787] locus:2082204; AT3G12150 Uncharacterized conserved protein (DUF2048) Os02g0195000 protein (cDNA clone:J033092H01, full insert sequence) Q6H7Q9 Q6H7Q9_ORYSJ Os02g0195000 OJ1225_F07.7 OSNPB_020195000 ENOG411DTK4 AHL10 O22812 AHL10_ARATH AT-hook motif nuclear-localized protein 10 (AT-hook protein 1) FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 36317 AT-hook motif nuclear-localized protein 10 (AT-hook protein 1) cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2051038; AT2G33620 AT hook motif domain containing protein expressed Os08g0512400 protein (Putative AT-hook DNA-binding protein),AT-hook motif nuclear localized protein 2 (Os09g0491708 protein) (cDNA clone:001-124-A12, full insert sequence),Os08g0512400 protein (Fragment) Q6Z8N9,A1A6F0,Q0J4I3 Q6Z8N9_ORYSJ,A1A6F0_ORYSJ,Q0J4I3_ORYSJ P0711H09.10-2 Os08g0512400 OSNPB_080512400,OsAHL2 Os09g0491708 OSNPB_090491708,Os08g0512400 Os08g0512400 OSNPB_080512400 ENOG411DTK7 O64477 Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (EC 2.7.11.1) 2.7.11.1 92342 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544] locus:2059103; AT2G19130 serine threonine-protein kinase Os01g0889900 protein (Putative S-receptor kinase) (cDNA clone:J013122K21, full insert sequence),Os01g0587400 protein (S-receptor kinase-like) (cDNA clone:J023118A19, full insert sequence),Os07g0553633 protein (Putative S-receptor kinase) (cDNA, clone: J053043L20, full insert sequence) Q8LQH1,Q5ZBQ1,Q6ZF83 Q8LQH1_ORYSJ,Q5ZBQ1_ORYSJ,Q6ZF83_ORYSJ Os01g0889900 B1099D03.46 OSNPB_010889900,Os01g0587400 OsJ_02398 OSNPB_010587400 P0700A11.14,Os07g0553633 OsJ_24689 OSNPB_070553633 P0013G11.16 ENOG411DTK6 SQS1,SQS2 P53799,O65688,A0A1P8B5E4,A0A1P8B8L3 FDFT1_ARATH,FDFT2_ARATH,A0A1P8B5E4_ARATH,A0A1P8B8L3_ARATH Squalene synthase 1 (SQS 1) (SS 1) (EC 2.5.1.21) (FPP:FPP farnesyltransferase 1) (Farnesyl-diphosphate farnesyltransferase 1),Inactive squalene synthase 2,Squalene synthase 2,Squalene synthase 1 PATHWAY: Terpene metabolism; lanosterol biosynthesis; lanosterol from farnesyl diphosphate: step 1/3. {ECO:0000269|PubMed:7892265}. ARA:AT4G34640-MONOMER;MetaCyc:AT4G34640-MONOMER;,ARA:AT4G34650-MONOMER;MetaCyc:AT4G34650-MONOMER; R-ATH-191273; 2.5.1.21; 2.5.1.21 47142,47183,33302,40854 Squalene synthase 1 (SQS 1) (SS 1) (EC 2.5.1.21) (FPP:FPP farnesyltransferase 1) (Farnesyl-diphosphate farnesyltransferase 1),Inactive squalene synthase 2,Squalene synthase 2,Squalene synthase 1 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; farnesyl-diphosphate farnesyltransferase activity [GO:0004310]; oxidoreductase activity [GO:0016491]; squalene synthase activity [GO:0051996]; ergosterol biosynthetic process [GO:0006696]; farnesyl diphosphate metabolic process [GO:0045338]; isoprenoid biosynthetic process [GO:0008299]; sterol biosynthetic process [GO:0016126],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; farnesyl-diphosphate farnesyltransferase activity [GO:0004310]; ergosterol biosynthetic process [GO:0006696]; farnesyl diphosphate metabolic process [GO:0045338]; sterol biosynthetic process [GO:0016126],integral component of membrane [GO:0016021]; farnesyl-diphosphate farnesyltransferase activity [GO:0004310]; squalene synthase activity [GO:0051996]; ergosterol biosynthetic process [GO:0006696] DEVELOPMENTAL STAGE: First observed in very early stages of seedling development. Particularly expressed in the vascular tissues and the petioles. {ECO:0000269|PubMed:18236008}.,DEVELOPMENTAL STAGE: Primarily detected in the vascular tissue of leaf and cotyledon petioles, and the hypocotyl of one week-old seedlings. {ECO:0000269|PubMed:18236008}. TISSUE SPECIFICITY: Expressed in all tissues analyzed (seedlings, cotyledons, inflorescences, siliques, leaves, stems and roots). Highly expressed in roots and pollen. {ECO:0000269|PubMed:18236008, ECO:0000269|PubMed:9363754}.,TISSUE SPECIFICITY: Mostly expressed in hypocotyls, leaves and cotyledons, and, to a lower extent, in stems. {ECO:0000269|PubMed:18236008}. locus:2139514;,locus:2139534; AT4G34640,AT4G34650 Squalene Os07g0200700 protein (Putative squalene synthase) (cDNA clone:001-114-B01, full insert sequence),Os03g0805100 protein (Squalene synthase) (Squalene synthetase, putative, expressed) (cDNA, clone: J090011P14, full insert sequence) Q6Z368,O22105 Q6Z368_ORYSJ,O22105_ORYSJ Os07g0200700 Os07g0200700 OsJ_23470 OSNPB_070200700 P0519E02.23,Os03g0805100 LOC_Os03g59040 Os03g0805100 OSJNBb0015I02.13 OSNPB_030805100 ENOG411DTK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os03g0120200 protein (Remorin, C-terminal region family protein, expressed),Os03g0120200 protein (Remorin, C-terminal region family protein, expressed) (cDNA clone:J033094C20, full insert sequence) Q10SJ7,Q10SJ8 Q10SJ7_ORYSJ,Q10SJ8_ORYSJ Os03g0120200 LOC_Os03g02840 OSNPB_030120200,Os03g0120200 LOC_Os03g02840 Os03g0120200 OsJ_09203 OSNPB_030120200 ENOG411DTK0 RH50 Q8GUG7 RH50_ARATH DEAD-box ATP-dependent RNA helicase 50 (EC 3.6.4.13) FUNCTION: Probably involved in resistance to biotic and abiotic stresses. {ECO:0000250}. 3.6.4.13 87429 DEAD-box ATP-dependent RNA helicase 50 (EC 3.6.4.13) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; cellular defense response [GO:0006968]; RNA secondary structure unwinding [GO:0010501] locus:2077592; AT3G06980 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 50 (EC 3.6.4.13) Q0DVX2 RH50_ORYSJ Os03g0108600 LOC_Os03g01830 OJ1384D03.13 OsJ_09113 FUNCTION: Probably involved in resistance to biotic and abiotic stresses. Confers tolerance to oxidative stress and mediates pathogenesis-related (PR) genes expression. Exhibits RNA-dependent ATPase and ATP-dependent RNA helicase activities in vitro. {ECO:0000269|PubMed:18441339}. ENOG411DTK3 PHT2-1 Q38954 PHT21_ARATH Inorganic phosphate transporter 2-1, chloroplastic (H(+)/Pi cotransporter) (AtPht2;1) Small rosettes; Low phosphate levels in response to elevated phosphate-M. Harrison-2002 FUNCTION: Low affinity H(+)/Pi chloroplastic cotransporter. Involved in inorganic phosphate (orthophosphate, Pi) uptake in green parts of plants in Pi-sufficient conditions. Required for Pi retranslocation during Pi deprivation. {ECO:0000269|PubMed:12172020}. R-ATH-427652; 61419 Inorganic phosphate transporter 2-1, chloroplastic (H(+)/Pi cotransporter) (AtPht2;1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of plasma membrane [GO:0005887]; inorganic phosphate transmembrane transporter activity [GO:0005315]; low-affinity phosphate transmembrane transporter activity [GO:0009673]; symporter activity [GO:0015293]; phosphate ion transport [GO:0006817] DEVELOPMENTAL STAGE: During flower development, expressed in sepals, stamens and siliques. In seeds, confined to the connecting site of the funiculus. In seedlings, expressed in cotyledons and hypocotyls. Restricted progressively to vascular tissues as plants become older. {ECO:0000269|PubMed:15200639}. TISSUE SPECIFICITY: Mostly expressed in young green tissues. Present in both auto- and heterotrophic tissues. Also expressed in root stele. {ECO:0000269|PubMed:10559441, ECO:0000269|PubMed:15200639}. locus:2088852; AT3G26570 phosphate Phosphate transporter Q6ZH87,Q6ZH86 Q6ZH87_ORYSJ,Q6ZH86_ORYSJ Os02g0593500 OJ1067_B01.4-2 OSJNBa0016G10.26-2 OSNPB_020593500,Os02g0593500 OJ1067_B01.4-1 OsJ_07345 OSJNBa0016G10.26-1 OSNPB_020593500 FUNCTION: Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. {ECO:0000256|RuleBase:RU363058}. ENOG411DTK2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 CBS domain-containing protein-like (Os01g0961200 protein) Q5JMT5 Q5JMT5_ORYSJ Os01g0961200 OSNPB_010961200 P0401G10.34 P0483G10.9 ENOG411E5DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0180400 protein A0A0P0XCC7 A0A0P0XCC7_ORYSJ Os08g0180400 OSNPB_080180400 ENOG411E5DC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gata transcription factor Expressed protein (Os03g0831200 protein) (Putative GATA-type zinc finger protein) (Putative zinc finger protein) (cDNA clone:J033058P14, full insert sequence),Os03g0831200 protein (Fragment) Q850Z5,A0A0N7KIC1 Q850Z5_ORYSJ,A0A0N7KIC1_ORYSJ OSJNBb0027B08.10 LOC_Os03g61570 Os03g0831200 OsJ_13227 OSJNBa0078D06.18 OSNPB_030831200,Os03g0831200 OSNPB_030831200 ENOG411E5DM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Thioredoxin H5 (OsTrxh5) (OsTrx20) Q75GM1 TRXH5_ORYSJ Os05g0480200 LOC_Os05g40190 OSJNBa0018K15.18 FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes. ENOG411E5DV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5DU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0380200 protein,OSJNBb0089B03.11 protein (Os04g0380200 protein) Q0JDS7,Q7XNQ0 Q0JDS7_ORYSJ,Q7XNQ0_ORYSJ Os04g0380200 Os04g0380200 OSNPB_040380200,Os04g0380200 OsJ_14520 OSJNBb0089B03.11 OSNPB_040380200 ENOG411E5DR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional activator that binds specifically to the DNA sequence 5'- AG CCGAC-3'. Binding to the C-repeat DRE element mediates high salinity- and dehydration-inducible transcription (By similarity) Dehydration-responsive element-binding protein 1J (Protein DREB1J),Dehydration-responsive element-binding protein 1D (Protein DREB1D) (Protein C-repeat-binding factor 4),Os08g0545500 protein (Fragment) Q0J3Y7,Q6J1A5,A0A0P0XIK7 DRE1J_ORYSJ,DRE1D_ORYSJ,A0A0P0XIK7_ORYSJ DREB1J ERF28 Os08g0545500 Os08g0545400 LOC_Os08g43200 OJ1323_A06.7 OsJ_027024 P0623F08.40,DREB1D CBF4 ERF116 Os06g0165600 LOC_Os06g06970 OSJNBa0015I14.27 P0680A03.1,Os08g0545500 OSNPB_080545500 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. ENOG411E5DS T21H19_30 Q9LF17,Q8LF93 Q9LF17_ARATH,Q8LF93_ARATH Uncharacterized protein T21H19_30,At3g02555 26520,17744 Uncharacterized protein T21H19_30,At3g02555 locus:2181377;,locus:505006326; AT5G16110,AT3G02555 NA NA NA NA NA NA NA NA ENOG411E5D0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0758200 protein Q6Z7V0 Q6Z7V0_ORYSJ Os02g0758200 Os02g0758200 OSNPB_020758200 P0471A11.35 ENOG411E5D1 Q84VW0,A0A1P8B7F1 Q84VW0_ARATH,A0A1P8B7F1_ARATH At4g15930 (Dynein light chain type 1 family protein),Dynein light chain type 1 family protein 13793,10703 At4g15930 (Dynein light chain type 1 family protein),Dynein light chain type 1 family protein cytoplasmic dynein complex [GO:0005868]; cytoskeletal protein binding [GO:0008092]; dynein intermediate chain binding [GO:0045505]; dynein light intermediate chain binding [GO:0051959]; cilium assembly [GO:0060271]; positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [GO:2000582]; transport along microtubule [GO:0010970],dynein complex [GO:0030286]; microtubule-based process [GO:0007017] locus:2129805; AT4G15930 dynein light chain Dynein light chain Q9SDK0,A0A0P0WWS5 Q9SDK0_ORYSJ,A0A0P0WWS5_ORYSJ Os01g0256400 Os01g0256400 OSNPB_010256400 P0711E10.35,Os06g0492700 OSNPB_060492700 ENOG411EK63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411DWJZ Q5XF12 Q5XF12_ARATH At1g65020 (Plasma protein) 35624 At1g65020 (Plasma protein) endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886] locus:2014983; AT1G65020 Nuclease-related domain (RAP Annotation release2) NERD domain containing protein (Expressed protein) (Os10g0577000 protein),Os10g0577000 protein Q336N9,A0A0P0XXP7 Q336N9_ORYSJ,A0A0P0XXP7_ORYSJ LOC_Os10g42630 Os10g0577000 OsJ_32579 OSJNBa0027L23.9 OSNPB_100577000,Os10g0577000 OSNPB_100577000 ENOG411DTQX Q9SK49 C3H22_ARATH Zinc finger CCCH domain-containing protein 22 (AtC3H22) 55935 Zinc finger CCCH domain-containing protein 22 (AtC3H22) DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:2047319; AT2G24830 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 18 (OsC3H18),Os02g0793000 protein (Fragment) Q6K687,A0A0P0VQN6 C3H18_ORYSJ,A0A0P0VQN6_ORYSJ Os02g0793000 LOC_Os02g55000 OJ1249_F12.27-1 P0700F06.15-1,Os02g0793000 OSNPB_020793000 ENOG411E0M5 Q5BPS2,Q6E267,A0A1P8AZ03,A0A1P8AYU7,A0A1P8AZ01 Q5BPS2_ARATH,Q6E267_ARATH,A0A1P8AZ03_ARATH,A0A1P8AYU7_ARATH,A0A1P8AZ01_ARATH CCT motif family protein 45355,45483,44093,46322,37937 CCT motif family protein nucleus [GO:0005634] locus:2051099; AT2G33350 CCT motif family protein expressed CCT motif family protein, expressed (Os03g0139500 protein) (cDNA clone:J023082N23, full insert sequence) Q10S06 Q10S06_ORYSJ LOC_Os03g04620 Os03g0139500 OSNPB_030139500 ENOG411E0M6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA uridine nucleosidase NA NA NA NA NA NA NA ENOG411E0M0 Q94AZ5 Q94AZ5_ARATH Alanine-tRNA ligase (At2g45060/T14P1.13) 30337 Alanine-tRNA ligase (At2g45060/T14P1.13) mitochondrion [GO:0005739]; ligase activity [GO:0016874] locus:2055578; AT2G45060 NA Os02g0104800 protein (cDNA clone:J023067K03, full insert sequence) Q6YPG4 Q6YPG4_ORYSJ OJA1212_C06.19 Os02g0104800 OJ1212_C06.18 OSNPB_020104800 ENOG411E0M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os09g0371100 protein,Os09g0371200 protein A0A0P0XM20,A0A0P0XKZ3 A0A0P0XM20_ORYSJ,A0A0P0XKZ3_ORYSJ Os09g0371100 OSNPB_090371100,Os09g0371200 OSNPB_090371200 ENOG411E0M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif CCT motif family protein, expressed (CCT motif, putative) (Os03g0711100 protein) (cDNA clone:J013132M18, full insert sequence) Q53RJ0 Q53RJ0_ORYSJ LOC_Os03g50310 Os03g0711100 OSNPB_030711100 ENOG411E0M9 CXE9 O64641 CXE9_ARATH Probable carboxylesterase 9 (AtCXE9) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT2G45610-MONOMER; 3.1.1.1 36018 Probable carboxylesterase 9 (AtCXE9) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:14738307}. locus:2043654; AT2G45610 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E0MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E0MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os03g0165900 protein (TPR Domain containing protein, expressed) (cDNA clone:J033084J17, full insert sequence),Os03g0165900 protein (Fragment) Q10RB0,A0A0N7KGN0 Q10RB0_ORYSJ,A0A0N7KGN0_ORYSJ LOC_Os03g06970 Os03g0165900 OsJ_09542 OSNPB_030165900,Os03g0165900 OSNPB_030165900 ENOG411E0ME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os05g0514600 protein Q0DGS3 Q0DGS3_ORYSJ Os05g0514600 Os05g0514600 OSNPB_050514600 ENOG411E0MA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q8H3V2 Q8H3V2_ORYSJ P0496C02.119 Os07g0660500 OSNPB_070660500 ENOG411E0MB TIFY8 Q84MB2,A0A1P8B440 TIF8_ARATH,A0A1P8B440_ARATH Protein TIFY 8,TIFY domain protein 8 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q9M246}. 38733,38135 Protein TIFY 8,TIFY domain protein 8 nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:2125731; AT4G32570 TIFY domain protein 8 NA NA NA NA NA NA NA ENOG411E0MM Q9ZPV5 NOC2L_ARATH Nucleolar complex protein 2 homolog (Protein NOC2 homolog) 86961 Nucleolar complex protein 2 homolog (Protein NOC2 homolog) cytosol [GO:0005829]; Noc1p-Noc2p complex [GO:0030690]; Noc2p-Noc3p complex [GO:0030691]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; ribosomal large subunit biogenesis [GO:0042273] locus:2062205; AT2G18220 nucleolar complex protein 2 Nucleolar complex protein 2 homolog (Protein NOC2 homolog) Q8LNU5 NOC2L_ORYSJ Os10g0495500 LOC_Os10g35280 OsJ_32023 OSJNBa0041P03.9 ENOG411E0MI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 and GRAM domain-containing protein Os04g0476600 protein (Fragment) Q0JCE2 Q0JCE2_ORYSJ Os04g0476600 Os04g0476600 OSNPB_040476600 ENOG411E0MK RDM16,T8M16_120 Q9C7E7,Q1PEF1,Q9LES8,A0A1I9LTU6 RDM16_ARATH,Q1PEF1_ARATH,Q9LES8_ARATH,A0A1I9LTU6_ARATH Protein RDM16 (Pre-mRNA-splicing factor RDM16) (Protein RNA-directed DNA methylation 16),Pre-mRNA-splicing factor (RNA splicing factor-like protein),RNA splicing factor-like protein (Uncharacterized protein T8M16_120),Pre-mRNA-splicing factor (Fragment) DISRUPTION PHENOTYPE: Embryonic lethalithy when homozygous. {ECO:0000269|PubMed:24068953}. FUNCTION: Functions in the RNA-directed DNA methylation (RdDM) pathway. Acts as a pre-mRNA splicing factor, likely by affecting Pol V transcripts. Affects DNA methylation of transposable elements (TEs) and preferentially influences NRPD1- and ROS1-targeted loci. {ECO:0000269|PubMed:24068953}. R-ATH-72163; 88638,31350,24202,15962 Protein RDM16 (Pre-mRNA-splicing factor RDM16) (Protein RNA-directed DNA methylation 16),Pre-mRNA-splicing factor (RNA splicing factor-like protein),RNA splicing factor-like protein (Uncharacterized protein T8M16_120),Pre-mRNA-splicing factor (Fragment) nucleoplasm [GO:0005654]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; embryo development ending in seed dormancy [GO:0009793]; mRNA processing [GO:0006397]; mRNA splicing, via spliceosome [GO:0000398]; regulation of DNA methylation [GO:0044030],U4/U6 x U5 tri-snRNP complex [GO:0046540]; mRNA splicing, via spliceosome [GO:0000398] locus:2010519;,locus:2103585; AT1G28060,AT3G55930,AT3G56790 U4 U6 small nuclear ribonucleoprotein Os09g0249600 protein (Fragment) A0A0P0XIW0,A0A0N7KQF0 A0A0P0XIW0_ORYSJ,A0A0N7KQF0_ORYSJ Os09g0249600 OSNPB_090249600 ENOG411DSI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carboxylesterase 17-like NA NA NA NA NA NA NA ENOG411DSI5 RH16 Q9SW44 RH16_ARATH DEAD-box ATP-dependent RNA helicase 16 (EC 3.6.4.13) 3.6.4.13 69502 DEAD-box ATP-dependent RNA helicase 16 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364] locus:2116920; AT4G34910 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 16 (EC 3.6.4.13),Os03g0728800 protein (Fragment) Q6ATJ8,A0A0P0W3G8 RH16_ORYSJ,A0A0P0W3G8_ORYSJ Os03g0728800 LOC_Os03g51900 OSJNBa0005H20.2 OSJNBb0011H13.1,Os03g0728800 OSNPB_030728800 ENOG411DSI6 MOT2,MOT1 Q0WP36,Q9SL95 MOT2_ARATH,MOT1_ARATH Molybdate transporter 2 (Sulfate transporter like protein 5.1),Molybdate transporter 1 (Sulfate transporter like protein 5.2) DISRUPTION PHENOTYPE: No visible phenotype and no effect on molybdate content in shoots when grown in soil, but increased levels in leaves and decreased levels in seeds. {ECO:0000269|PubMed:21131548, ECO:0000269|PubMed:21815974}.,DISRUPTION PHENOTYPE: 90% and 80% reduction in molybdate content in shoots and roots respectively. Reduced growth of roots and shoots under conditions of limited molybdate supply. 9-fold reduction in molybdate content in leaf vacuoles. Decreased nitrate reductase activity due to a reduced molybdate uptake. {ECO:0000269|PubMed:18003916, ECO:0000269|PubMed:21131548, ECO:0000269|PubMed:21815974}. molybdate concentrations in shoot and root were reduced to 10% and 20% respectively of that in the wild type. Shoot and root growth under Mo-limiting condition was reduced to 35% and 70% respectively.,molybdate concentrations in shoot and root were reduced to 20% and 25% respectively of that in the wild type. Shoot and root growth under Mo-limiting condition was reduced to 80% and 75% respectively. Low molybdenum levels; Shoot growth sensitive to limited molybdenum-T. Fujiwara-2007 FUNCTION: Molybdate transporter required for vacuolar molybdate export during senescence. {ECO:0000269|PubMed:21131548, ECO:0000269|PubMed:21815974}.,FUNCTION: High affinity molybdate transporter. Unable to transport sulfate. {ECO:0000269|PubMed:18003916, ECO:0000269|PubMed:18454190, ECO:0000269|PubMed:21131548, ECO:0000269|PubMed:21815974}. MISCELLANEOUS: About 80% of the leaf molybdate is exported during senescence.,MISCELLANEOUS: The amino-acid substitution Asp-429 to Val observed in cv. Landsberg erecta may decrease the molybdate transport activity. A 54-bp deletion in the promoter of MOT1 is strongly associated with the decreased expression of the gene and the resulting low molybdate content observed in several cultivars. 49551,48391 Molybdate transporter 2 (Sulfate transporter like protein 5.1),Molybdate transporter 1 (Sulfate transporter like protein 5.2) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuole [GO:0005773]; molybdate ion transmembrane transporter activity [GO:0015098]; molybdate ion export from vacuole [GO:0090414]; molybdate ion transport [GO:0015689],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; vacuole [GO:0005773]; molybdate ion transmembrane transporter activity [GO:0015098]; molybdate ion transport [GO:0015689] DEVELOPMENTAL STAGE: Up-regulated in senescing leaves. {ECO:0000269|PubMed:21815974}.,DEVELOPMENTAL STAGE: Not regulated during leaf senescence. {ECO:0000269|PubMed:21815974}. TISSUE SPECIFICITY: Expressed in leaves. Not detected in roots, shoots and seeds.,TISSUE SPECIFICITY: Strongly expressed in roots. Detected in the vascular tissues of hypocotyls, in petioles and vascular tissues of cotyledons and leaves, in mesophyll cells, stamen, sepals and siliques. {ECO:0000269|PubMed:18003916, ECO:0000269|PubMed:18454190}. locus:2034245;,locus:2050261; AT1G80310,AT2G25680 sulfate transporter Os01g0645900 protein (Sulfate transporter protein-like) (cDNA clone:J023135A05, full insert sequence),Os08g0101500 protein (Putative sulfate transporter-like) Q9ASA0,Q6Z1Z0 Q9ASA0_ORYSJ,Q6Z1Z0_ORYSJ Os01g0645900 OsJ_02808 OSNPB_010645900 P0038D11.6 P0707D10.33,Os08g0101500 B1147B12.16 OsJ_25721 OSNPB_080101500 ENOG411DSI7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase Os01g0253000 protein (cDNA clone:J023107E01, full insert sequence) Q0JP06 Q0JP06_ORYSJ Os01g0253000 Os01g0253000 OSNPB_010253000 ENOG411DSI0 SNF4 Q944A6 SNF4_ARATH Sucrose nonfermenting 4-like protein (SNF4) (CBS domain-containing protein CBSCBS3) (SNF1-related protein kinase regulatory subunit betagamma) (AKIN subunit betagamma) (AKINbetagamma) FUNCTION: Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. R-ATH-163680;R-ATH-200425;R-ATH-380972; Adipocytokine signaling pathway (04920),Circadian rhythm (04710),Hypertrophic cardiomyopathy (HCM) (05410),Insulin signaling pathway (04910) 53466 Sucrose nonfermenting 4-like protein (SNF4) (CBS domain-containing protein CBSCBS3) (SNF1-related protein kinase regulatory subunit betagamma) (AKIN subunit betagamma) (AKINbetagamma) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein kinase activator activity [GO:0030295]; protein kinase regulator activity [GO:0019887]; protein serine/threonine kinase activity [GO:0004674]; carbohydrate metabolic process [GO:0005975]; cellular response to glucose starvation [GO:0042149]; mitochondrial fission [GO:0000266]; peroxisome fission [GO:0016559]; pollen hydration [GO:0009859]; protein autophosphorylation [GO:0046777]; regulation of protein kinase activity [GO:0045859]; regulation of reactive oxygen species metabolic process [GO:2000377] TISSUE SPECIFICITY: Preferentially expressed in dividing cells, as well as in shoot apex and flower buds, but expressed at a lower level in differentiated tissues of roots, and leaves of rosette and inflorescence. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:17028154}. locus:2036079; AT1G09020 sucrose nonfermenting 4-like Os03g0856400 protein (Protein kinase AKINbetagamma-2, putative, expressed) (cDNA clone:J013000N04, full insert sequence) (cDNA clone:J033100L02, full insert sequence) Q84M80 Q84M80_ORYSJ LOC_Os03g63940 Os03g0856400 Os03g63940 OsJ_13432 OSJNBa0059G06.25 OSNPB_030856400 ENOG411DSI1 CYP79A2,CYP79B2,CYP79B3 Q9FLC8,O81346,Q501D8,A0A1P8AYN1,A0A1P8B560 C79A2_ARATH,C79B2_ARATH,C79B3_ARATH,A0A1P8AYN1_ARATH,A0A1P8B560_ARATH Phenylalanine N-monooxygenase (EC 1.14.14.40) (Cytochrome P450 79A2) (Phenylalanine N-hydroxylase),Tryptophan N-monooxygenase 1 (EC 1.14.13.125) (Cytochrome P450 79B2) (Tryptophan N-hydroxylase 1),Tryptophan N-monooxygenase 2 (EC 1.14.13.125) (Cytochrome P450 79B3) (Tryptophan N-hydroxylase 2),Cytochrome P450, family 79, subfamily B, polypeptide 3,Cytochrome P450, family 79, subfamily B, polypeptide 2 No visible phenotype.,Following P. syringae infection camalexin levels in cyp79B2 were approximately half of wild-type levels. Similar results were observed following A. brassicicola infection.,Subtle growth phenotypes under normal culture conditions: double mutant plants have slightly shorter petioles and smaller leaves which would be expected if the double mutant produces less IAA.,At 21°C there was no significant difference between the double mutant and wild type; however at 26°C there was significantly less free IAA in cyp79B2 cyp79B3 relative to Col-0. In addition the cyp79B3 mutant showed a modest decrease in free IAA compared with Col-0 at 26°C.,Following P. syringae infection camalexin in the double mutant was undetectable. Similar results were observed following A. brassicicola infection.,Indole-3-acetonitrile (IAN) treatment restored camalexin synthesis in cyp79B2 cyp79B3 plants that are unable to produce camalexin due to failure to synthesize indole-3-acetaldoxime (IAOx).,The double mutant was as susceptible to A. brassicicola as pad3-1 and cyp71A13 mutants.,The hypocotyl length of the double mutant grown at 26°C was ~50% of the length of the wild type grown under the same conditions. This reduction in hypocotyl length likely correlates with decreased levels of endogenous-free IAA. Adult cyp79B2 cyp79B3 plants are also sensitive to temperature changes. cyp79B2 cyp79B3 grown at 19°C has much smaller slightly curled leaves that are characteristic of known IAA-resistant mutants.,Wild-type plants were minimally sensitive to 5 ;M 5-methyltryptophan (5MT) whereas the double mutant was extremely sensitive to this concentration of 5MT and appears at least threefold more sensitive to 5MT than to wild type.,Following P. syringae infection camalexin levels in cyp79B3 were indistinguishable from that of the wild type. FUNCTION: Converts L-phenylalanine into phenylacetaldoxime, the precursor of benzylglucosinolate (glucotropeolin). {ECO:0000269|PubMed:10799553}.,FUNCTION: Converts tryptophan to indole-3-acetaldoxime, a precursor for tryptophan-derived glucosinolates and indole-3-acetic acid (IAA) (PubMed:10681464, PubMed:10922360). Involved in the biosynthetic pathway to 4-hydroxyindole-3-carbonyl nitrile (4-OH-ICN), a cyanogenic metabolite required for inducible pathogen defense (PubMed:26352477). {ECO:0000269|PubMed:10681464, ECO:0000269|PubMed:10922360, ECO:0000269|PubMed:26352477}.,FUNCTION: Converts tryptophan to indole-3-acetaldoxime, a precursor for tryptophan derived glucosinolates and indole-3-acetic acid (IAA). {ECO:0000269|PubMed:10681464}. PATHWAY: Secondary metabolite biosynthesis; phenylglucosinolate biosynthesis. ARA:AT5G05260-MONOMER;MetaCyc:AT5G05260-MONOMER;,ARA:AT4G39950-MONOMER;MetaCyc:AT4G39950-MONOMER;,ARA:AT2G22330-MONOMER;MetaCyc:AT2G22330-MONOMER; 1.14.13.124;,1.14.13.125; 1.14.14.40,1.14.13.125 59812,61348,61438,64003,65969 Phenylalanine N-monooxygenase (EC 1.14.14.40) (Cytochrome P450 79A2) (Phenylalanine N-hydroxylase),Tryptophan N-monooxygenase 1 (EC 1.14.13.125) (Cytochrome P450 79B2) (Tryptophan N-hydroxylase 1),Tryptophan N-monooxygenase 2 (EC 1.14.13.125) (Cytochrome P450 79B3) (Tryptophan N-hydroxylase 2),Cytochrome P450, family 79, subfamily B, polypeptide 3,Cytochrome P450, family 79, subfamily B, polypeptide 2 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; defense response to other organism [GO:0098542]; indoleacetic acid biosynthetic process [GO:0009684],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; camalexin biosynthetic process [GO:0010120]; defense response [GO:0006952]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229]; glucosinolate biosynthetic process [GO:0019761]; indoleacetic acid biosynthetic process [GO:0009684]; induced systemic resistance [GO:0009682]; response to bacterium [GO:0009617]; response to insect [GO:0009625]; response to water deprivation [GO:0009414]; tryptophan catabolic process [GO:0006569],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; camalexin biosynthetic process [GO:0010120]; defense response [GO:0006952]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; glucosinolate biosynthetic process [GO:0019761]; indoleacetic acid biosynthetic process [GO:0009684]; induced systemic resistance [GO:0009682]; regulation of systemic acquired resistance [GO:0010112]; response to bacterium [GO:0009617]; response to insect [GO:0009625]; response to wounding [GO:0009611]; tryptophan catabolic process [GO:0006569],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Found in all tissues tested. Highest expression in roots, and low expression in stem. {ECO:0000269|PubMed:10922360}. locus:2140020;,locus:2041293; AT5G05260,AT4G39950,AT2G22330 cytochrome P450 Os04g0171800 protein (cDNA clone:J023074N24, full insert sequence),Cytochrome P450 79A1, putative, expressed (Os03g0570100 protein) (cDNA clone:002-117-A08, full insert sequence),Os04g0171600 protein (cDNA clone:J023119K20, full insert sequence),Os04g0174100 protein,Os04g0171600 protein Q0JF25,Q10HZ6,Q0JF26,A0A0P0W704,A0A0P0W738 Q0JF25_ORYSJ,Q10HZ6_ORYSJ,Q0JF26_ORYSJ,A0A0P0W704_ORYSJ,A0A0P0W738_ORYSJ Os04g0171800 Os04g0171800 OSNPB_040171800,Os03g0570100 LOC_Os03g37290 Os03g0570100 OSNPB_030570100,Os04g0171600 Os04g0171600 OSNPB_040171600,Os04g0174100 OSNPB_040174100,Os04g0171600 OSNPB_040171600 ENOG411DSI2 A0A1P8B8Y0,A0A1P8B8V7,F4JQZ6,F4JQZ7 A0A1P8B8Y0_ARATH,A0A1P8B8V7_ARATH,F4JQZ6_ARATH,F4JQZ7_ARATH Pesticidal crystal cry8Ba protein 129125,129498,128996,129626 Pesticidal crystal cry8Ba protein plasma membrane [GO:0005886] locus:2121904; AT4G24610 NA Os02g0760200 protein (Fragment),Os02g0760200 protein A0A0N7KG49,A0A0P0VQA0 A0A0N7KG49_ORYSJ,A0A0P0VQA0_ORYSJ Os02g0760200 OSNPB_020760200 ENOG411DSI3 UBA2,UBA1 P92974,P93028 UBE12_ARATH,UBE11_ARATH Ubiquitin-activating enzyme E1 2 (AtUBA2) (EC 6.2.1.45),Ubiquitin-activating enzyme E1 1 (AtUBA1) (EC 6.2.1.45) (Protein MODIFIER OF SNC1 5) DISRUPTION PHENOTYPE: No visible phenotype and no changes in disease susceptibility. {ECO:0000269|PubMed:17217463}. lethal,The mutant supports 5-fold more virulent bacterial growth indicates the gene plays a role in basal resistance to virulent bacteria. The mutant also shows increased susceptibility (10-fold) to certain avirulent pathogens. Susceptible to bacterial infection-X. Li-2007 FUNCTION: Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding a ubiquitin-E1 thioester and free AMP. {ECO:0000269|PubMed:9076989}.,FUNCTION: Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding a ubiquitin-E1 thioester and free AMP. {ECO:0000269|PubMed:17217463, ECO:0000269|PubMed:9076989}. MISCELLANEOUS: Both UBA1 and UBA2 are able to activate ubiquitin and transfer it to the E2s with equal efficiency. {ECO:0000269|PubMed:9076989}.,MISCELLANEOUS: Both UBA1 and UBA2 are able to activate ubiquitin and transfer it to the E2s with equal efficiency. {ECO:0000269|PubMed:9076989}.; MISCELLANEOUS: Mutation in UBA1 (mos5) suppresses snc1-mediated constitutive resistance and affects the resistance responses conferred by only a subset of R-proteins. {ECO:0000269|PubMed:17217463}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000269|PubMed:9076989}. R-ATH-8866652; 2.3.2.B5;6.2.1.B9;,6.2.1.B9; 6.2.1.45 119624,120251 Ubiquitin-activating enzyme E1 2 (AtUBA2) (EC 6.2.1.45),Ubiquitin-activating enzyme E1 1 (AtUBA1) (EC 6.2.1.45) (Protein MODIFIER OF SNC1 5) cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; small protein activating enzyme activity [GO:0008641]; ubiquitin-protein transferase activity [GO:0004842]; cellular response to DNA damage stimulus [GO:0006974]; protein ubiquitination [GO:0016567],cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; small protein activating enzyme activity [GO:0008641]; ubiquitin-protein transferase activity [GO:0004842]; cellular response to DNA damage stimulus [GO:0006974]; protein ubiquitination [GO:0016567]; response to cadmium ion [GO:0046686]; response to other organism [GO:0051707] DEVELOPMENTAL STAGE: Expressed over the entire range of development. {ECO:0000269|PubMed:9076989}. TISSUE SPECIFICITY: Expressed in leaves, flowers, roots and stems. Detected in germinating seeds, cotyledons, hypocotyls, vascular tissues, anthers, filaments, pollen, style, stigma, sepals, petals, ovary, developing ovules, funiculi and silique walls. {ECO:0000269|PubMed:9076989}. locus:2164270;,locus:2060854; AT5G06460,AT2G30110 Ubiquitin-activating enzyme e1 Os11g0106400 protein (Ubiquitin-activating enzyme E1 2, putative, expressed),Os11g0106400 protein (Os12g0105950 protein) (Fragment),Os12g0105975 protein Q2RBM4,A0A0P0XY47,A0A0P0XXZ7,A0A0P0Y5Y8 Q2RBM4_ORYSJ,A0A0P0XY47_ORYSJ,A0A0P0XXZ7_ORYSJ,A0A0P0Y5Y8_ORYSJ LOC_Os11g01510 Os11g0106400 OSNPB_110106400,Os11g0106400 Os12g0105950 OSNPB_110106400 OSNPB_120105950,Os12g0105975 OSNPB_120105975 ENOG411DSI8 PPOX1 Q9LTX3 PPOX1_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic (AtPPOX1) [Includes: Pyridoxine/pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx) (Pyridoxal 5'-phosphate synthase); Probable NAD(P)HX epimerase (EC 5.1.99.-)] Reduced root growth and foliar biomass. Total vitamin B6 levels were lower than in wild type measured using yeast bioassay. Small root system; Reduced fertility; Sensitive to high light; Increased growth in response to sucrose; Resistant to salt-M. Daub-2007 FUNCTION: Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). Involved in the PLP salvage pathway. Has a higher preference for PNP over PMP. May also catalyze the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. {ECO:0000269|PubMed:17224143, ECO:0000269|PubMed:17873088}. MISCELLANEOUS: Mutants with reduced expression of PPOX1 (RNAi) have lower levels of total B6 vitamers, a reduced growth and are sensitive to high light. {ECO:0000305|PubMed:21051239}. PATHWAY: Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate: step 1/1.; PATHWAY: Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxine 5'-phosphate: step 1/1. ARA:AT5G49970-MONOMER;MetaCyc:MONOMER-17901; R-ATH-197264; 5.1.99.6; 1.4.3.5; 5.1.99.- 59376 Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic (AtPPOX1) [Includes: Pyridoxine/pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx) (Pyridoxal 5'-phosphate synthase); Probable NAD(P)HX epimerase (EC 5.1.99.-)] chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; FMN binding [GO:0010181]; metal ion binding [GO:0046872]; NADHX epimerase activity [GO:0052856]; NADPHX epimerase activity [GO:0052857]; pyridoxamine-phosphate oxidase activity [GO:0004733]; NADH metabolic process [GO:0006734]; NADP metabolic process [GO:0006739]; pyridoxine biosynthetic process [GO:0008615] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and roots. {ECO:0000269|PubMed:21051239}. locus:2158814; AT5G49970 (pyridoxamine) 5'-phosphate oxidase NAD(P)H-hydrate epimerase (EC 5.1.99.6) (NAD(P)HX epimerase),Os10g0377800 protein (Fragment) Q338Z4,A0A0P0XTK4,A0A0P0XTG9 Q338Z4_ORYSJ,A0A0P0XTK4_ORYSJ,A0A0P0XTG9_ORYSJ Os10g0377800 LOC_Os10g23120 Os10g0377800 OSNPB_100377800,Os10g0377800 OSNPB_100377800 FUNCTION: Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. {ECO:0000256|HAMAP-Rule:MF_03159}. ENOG411DSI9 A0A1I9LM04,F4J246,F4J245 A0A1I9LM04_ARATH,F4J246_ARATH,F4J245_ARATH Condensin complex subunit 1 FUNCTION: Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. {ECO:0000256|PIRNR:PIRNR017127}. R-ATH-2514853; 157118,157706,155675 Condensin complex subunit 1 nucleus [GO:0005634]; cell division [GO:0051301]; mitotic chromosome condensation [GO:0007076],condensed chromosome, centromeric region [GO:0000779]; nuclear condensin complex [GO:0000799]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; cell division [GO:0051301]; chromosome separation [GO:0051304]; meiotic chromosome condensation [GO:0010032]; mitotic chromosome condensation [GO:0007076] locus:2080620; AT3G57060 Regulatory subunit of the condensin complex a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (By similarity) Condensin complex subunit 1 Q7XAM6 Q7XAM6_ORYSJ OJ1477_F01.124 P0496C02.109 Os07g0659500 OSNPB_070659500 FUNCTION: Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. {ECO:0000256|PIRNR:PIRNR017127}. ENOG411DSID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1637) Os09g0316000 protein A0A0P0XKS7 A0A0P0XKS7_ORYSJ Os09g0316000 OSNPB_090316000 ENOG411DSIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0719850 protein (Fragment) A0A0P0W282 A0A0P0W282_ORYSJ Os03g0719850 OSNPB_030719850 ENOG411DSIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase NA NA NA NA NA NA NA ENOG411DSIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os05g0534900 protein B9FHB0 B9FHB0_ORYSJ Os05g0534900 OsJ_19337 OSNPB_050534900 ENOG411DSIA RPOT2,RPOT1,MGP3 Q9LFV6,P92969,F4I0I3,F4KB75 RPOT2_ARATH,RPOT1_ARATH,F4I0I3_ARATH,F4KB75_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial (EC 2.7.7.6),DNA-directed RNA polymerase 1, mitochondrial (EC 2.7.7.6),DNA-directed RNA polymerase (EC 2.7.7.6) Slow growth; Wrinkly rosette leaves-J. Whelan-2009,Male and female gametophyte defective; Embryo defective (inferred)-J. Whelan-2009 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU003805}. 2.7.7.6 114521,110930,111763,119152 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial (EC 2.7.7.6),DNA-directed RNA polymerase 1, mitochondrial (EC 2.7.7.6),DNA-directed RNA polymerase (EC 2.7.7.6) chloroplast [GO:0009507]; mitochondrial DNA-directed RNA polymerase complex [GO:0034245]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from mitochondrial promoter [GO:0006390],mitochondrial DNA-directed RNA polymerase complex [GO:0034245]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from mitochondrial promoter [GO:0006390],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; embryo development ending in seed dormancy [GO:0009793]; plant ovule development [GO:0048481]; pollen tube growth [GO:0009860]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; thylakoid membrane [GO:0042651]; 5'-3' RNA polymerase activity [GO:0034062]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] locus:2205445;,locus:2143246; AT5G15700,AT1G68990 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) DNA-directed RNA polymerase (EC 2.7.7.6),DNA-directed RNA polymerase (EC 2.7.7.6) (Fragment) Q6K326,Q67UP6,A0A0P0WZX6,A0A0P0XIT1 Q6K326_ORYSJ,Q67UP6_ORYSJ,A0A0P0WZX6_ORYSJ,A0A0P0XIT1_ORYSJ OJ1058_F03.15-1 Os09g0246200 OSJNBa0069P02.30-1 OSNPB_090246200,Os06g0652000 Os06g0652000 OSNPB_060652000 P0453H04.42,Os06g0652000 OSNPB_060652000,Os09g0246200 OSNPB_090246200 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU003805}. ENOG411DSIB F4I824 F4I824_ARATH tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 55822 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase methyltransferase activity [GO:0008168]; sulfurtransferase activity [GO:0016783]; tRNA processing [GO:0008033] locus:2008291; AT1G51310 TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Os03g0174600 protein (cDNA clone:J033124K13, full insert sequence) (tRNA methyl transferase family protein, expressed),Os03g0174600 protein (Fragment) Q10R16,A0A0P0VTR1 Q10R16_ORYSJ,A0A0P0VTR1_ORYSJ LOC_Os03g07850 Os03g0174600 OSNPB_030174600,Os03g0174600 OSNPB_030174600 ENOG411DSIC LYSA1,LYSA2 Q949X7,Q94A94 DCDA1_ARATH,DCDA2_ARATH Diaminopimelate decarboxylase 1, chloroplastic (DAP decarboxylase 1) (DAPDC 1) (EC 4.1.1.20),Diaminopimelate decarboxylase 2, chloroplastic (DAP decarboxylase 2) (DAPDC 2) (EC 4.1.1.20) FUNCTION: Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine. {ECO:0000269|PubMed:15652176}. PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; L-lysine from DL-2,6-diaminopimelate: step 1/1. ARA:AT3G14390-MONOMER;MetaCyc:AT3G14390-MONOMER;,ARA:AT5G11880-MONOMER;MetaCyc:AT5G11880-MONOMER; R-ATH-351143;R-ATH-351202; 4.1.1.20; 4.1.1.20 53557,54164 Diaminopimelate decarboxylase 1, chloroplastic (DAP decarboxylase 1) (DAPDC 1) (EC 4.1.1.20),Diaminopimelate decarboxylase 2, chloroplastic (DAP decarboxylase 2) (DAPDC 2) (EC 4.1.1.20) chloroplast stroma [GO:0009570]; diaminopimelate decarboxylase activity [GO:0008836]; lysine biosynthetic process via diaminopimelate [GO:0009089],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; diaminopimelate decarboxylase activity [GO:0008836]; lysine biosynthetic process via diaminopimelate [GO:0009089] locus:2091055;,locus:2143054; AT3G14390,AT5G11880 diaminopimelate decarboxylase Probable diaminopimelate decarboxylase, chloroplastic (DAP decarboxylase) (DAPDC) (EC 4.1.1.20),Os02g0440000 protein (Fragment) Q6ZG77,A0A0P0VIL4 DCDA_ORYSJ,A0A0P0VIL4_ORYSJ LYSA Os02g0440000 LOC_Os02g24354 OJ1008_E02.6 OsJ_006351/OsJ_006352,Os02g0440000 OSNPB_020440000 FUNCTION: Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine. {ECO:0000250}. ENOG411DSIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-dependent ATP-dependent DNA helicase (EC 3.6.4.12) Q7XHW1 Q7XHW1_ORYSJ Os07g0681600 Os07g0681600 OSJNBa0008J01.26 OSNPB_070681600 ENOG411DSIN NMT1,NMT2 Q9LTR9,Q94L32,Q3EBG4 NMT1_ARATH,NMT2_ARATH,Q3EBG4_ARATH Glycylpeptide N-tetradecanoyltransferase 1 (EC 2.3.1.97) (Myristoyl-CoA:protein N-myristoyltransferase 1) (NMT 1) (Type I N-myristoyltransferase 1) (Peptide N-myristoyltransferase 1),Putative glycylpeptide N-tetradecanoyltransferase 2 (EC 2.3.1.97) (Myristoyl-CoA:protein N-myristoyltransferase 2) (NMT 2) (Type I N-myristoyltransferase 2) (Peptide N-myristoyltransferase 2),Acyl-CoA N-acyltransferases (NAT) superfamily protein late (after germination) developmental arrest phenotype. In the absence of sucrose as a reduced carbon source the nmt1-1 seedlings greened but grew no further. Finally the nmt1-1 line was much more sensitive to high glucose concentration than the wild type.,delay in flowering Seedling lethal-T. Meinnel-2007,Early flowering-T. Meinnel-2007 FUNCTION: Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins. Can also use decanoyl-CoA and lauroyl-CoA as substrates. {ECO:0000269|PubMed:10734119, ECO:0000269|PubMed:12912986}.,FUNCTION: May add a myristoyl group to the N-terminal glycine residue of certain cellular proteins. {ECO:0000250}. ARA:AT5G57020-MONOMER; R-ATH-2514859; 2.3.1.97; 2.3.1.97 49799,49628,12954 Glycylpeptide N-tetradecanoyltransferase 1 (EC 2.3.1.97) (Myristoyl-CoA:protein N-myristoyltransferase 1) (NMT 1) (Type I N-myristoyltransferase 1) (Peptide N-myristoyltransferase 1),Putative glycylpeptide N-tetradecanoyltransferase 2 (EC 2.3.1.97) (Myristoyl-CoA:protein N-myristoyltransferase 2) (NMT 2) (Type I N-myristoyltransferase 2) (Peptide N-myristoyltransferase 2),Acyl-CoA N-acyltransferases (NAT) superfamily protein cytosol [GO:0005829]; ribosome [GO:0005840]; glycylpeptide N-tetradecanoyltransferase activity [GO:0004379]; myristoyltransferase activity [GO:0019107]; embryonic shoot morphogenesis [GO:0010064]; growth [GO:0040007]; N-terminal peptidyl-glycine N-myristoylation [GO:0018008]; N-terminal protein myristoylation [GO:0006499],cytoplasm [GO:0005737]; glycylpeptide N-tetradecanoyltransferase activity [GO:0004379]; N-terminal peptidyl-glycine N-myristoylation [GO:0018008] TISSUE SPECIFICITY: Expressed ubiquitously, with higher levels in young tissues (at protein level). {ECO:0000269|PubMed:10734119}. locus:2164580;,locus:504956005; AT5G57020,AT2G44170,AT2G44175 Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins (By similarity) Glycylpeptide N-tetradecanoyltransferase (EC 2.3.1.97) Q8LR54 Q8LR54_ORYSJ Os01g0708100 OSNPB_010708100 P0510F09.24 FUNCTION: Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins. {ECO:0000256|RuleBase:RU000586}. ENOG411DSIH RPT2B,RPT2A Q9SL67,Q9SZD4 PRS4B_ARATH,PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog B (26S proteasome AAA-ATPase subunit RPT2b) (26S proteasome subunit 4 homolog B) (Regulatory particle triple-A ATPase subunit 2b),26S proteasome regulatory subunit 4 homolog A (26S proteasome AAA-ATPase subunit RPT2a) (26S proteasome subunit 4 homolog A) (Protein HALTED ROOT) (Regulatory particle triple-A ATPase subunit 2a) DISRUPTION PHENOTYPE: Displays disruption of cellular organization in the postembryonic root and shoot apical meristems. Leads to decreased 26SP accumulation, resulting in reduced rates of Ub-dependent proteolysis. Shows hypersensitivity to heat shock and increased oxidative stress tolerance. Displays enlarged leaves, stems, flowers, fruits, seeds and embryos, caused by increased cell size and shows increased branch number and nuclear size of trichomes, in correlation with increased ploidy. Mutant displays enhanced susceptibility to the fungal pathogen G. cichoracearum. {ECO:0000269|PubMed:15073153, ECO:0000269|PubMed:17971041, ECO:0000269|PubMed:19321709, ECO:0000269|PubMed:19500299, ECO:0000269|PubMed:22577987}. The hlr-1 (halted root-1) mutant has defective cell organization in the post-embryonic root and shoot apical meristems. Quiescent center cell identity in the root is lost after germination and expression of the organizing center marker WUSCHEL in the shoot is disrupted. However cells in differentiated tissues maintain their normal identities. hlr-1 mutants have shorter roots aberrant lateral root primordia positioning abnormal leaf shape and phyllotaxy and irregular shoot structure.,The hlr-2 mutant is reported to share the same morphological characteristics with the hlr-1 mutant but to have a slightly milder phenotype. hlr-1 has defects in root and shoot apical meristem organization and root and shoot development.,The rpt2a-2 mutant has modest defects in ubiquitin-mediated proteolysis via the 26S proteasome rendering it somewhat more sensitive to misfolded proteins that are degraded in a 26S-proteasome / Ub-dependent manner. However it also has modestly increased levels of the 20S core particle of the proteasome and exhibits some reduced sensitivity to oxidative stress presumably since oxidatively damaged proteins can be degraded in a 20S proteasome-dependent but 26S proteasome /Ub-independent manner. The mutant has shorter roots than WT plants. Short roots-K. Okada-2004 FUNCTION: The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.,FUNCTION: The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. Is required for the maintenance of postembryonic root and shoot meristems. Has a specific role in the regulation of organs size. {ECO:0000269|PubMed:15073153, ECO:0000269|PubMed:17971041, ECO:0000269|PubMed:19321709, ECO:0000269|PubMed:19500299, ECO:0000269|PubMed:22577987}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-532668;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 49347,49370 26S proteasome regulatory subunit 4 homolog B (26S proteasome AAA-ATPase subunit RPT2b) (26S proteasome subunit 4 homolog B) (Regulatory particle triple-A ATPase subunit 2b),26S proteasome regulatory subunit 4 homolog A (26S proteasome AAA-ATPase subunit RPT2a) (26S proteasome subunit 4 homolog A) (Protein HALTED ROOT) (Regulatory particle triple-A ATPase subunit 2a) cytosol [GO:0005829]; cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; female gamete generation [GO:0007292]; maintenance of root meristem identity [GO:0010078]; male gamete generation [GO:0048232]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],cytosolic proteasome complex [GO:0031597]; membrane [GO:0016020]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; female gamete generation [GO:0007292]; innate immune response [GO:0045087]; lateral root formation [GO:0010311]; leaf morphogenesis [GO:0009965]; maintenance of root meristem identity [GO:0010078]; male gamete generation [GO:0048232]; meristem growth [GO:0035266]; meristem structural organization [GO:0009933]; phyllome development [GO:0048827]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; proteasome assembly [GO:0043248]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of gene silencing [GO:0060968]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to misfolded protein [GO:0051788]; root cap development [GO:0048829]; root development [GO:0048364]; root morphogenesis [GO:0010015]; seedling development [GO:0090351]; shoot system development [GO:0048367]; ubiquitin-dependent ERAD pathway [GO:0030433] TISSUE SPECIFICITY: Preferentially expressed in the root and shoot apical meristem. {ECO:0000269|PubMed:19500299}.,TISSUE SPECIFICITY: Preferentially expressed in the root and shoot apical meristem. {ECO:0000269|PubMed:15073153, ECO:0000269|PubMed:19500299}. locus:2061639;,locus:2119926; AT2G20140,AT4G29040 26S proteasome regulatory subunit 26S proteasome regulatory subunit 4 homolog (Tat-binding protein homolog 2),26S protease regulatory subunit 4, putative, expressed (26S proteasome regulatory particle triple-A ATPase subunit2b) (Os03g0298400 protein) (cDNA clone:J023030D05, full insert sequence),Os07g0691800 protein (Fragment),Os03g0298400 protein (Fragment) P46466,Q8W422,A0A0P0XAP0,A0A0P0VX70 PRS4_ORYSJ,Q8W422_ORYSJ,A0A0P0XAP0_ORYSJ,A0A0P0VX70_ORYSJ TBP2 Os07g0691800 LOC_Os07g49150 P0034A04.112,OsRPT2b LOC_Os03g18690 Os03g0298400 OSNPB_030298400,Os07g0691800 OSNPB_070691800,Os03g0298400 OSNPB_030298400 FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity). {ECO:0000250}. ENOG411DSII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0197300 protein (Fragment) A0A0P0XD26 A0A0P0XD26_ORYSJ Os08g0197300 OSNPB_080197300 ENOG411DSIJ Q8LG03 FB345_ARATH F-box protein At4g00755 42775 F-box protein At4g00755 locus:505006420; AT4G00755 F-Box protein F-box family protein, putative, expressed (Os03g0116800 protein) (cDNA clone:001-042-F01, full insert sequence) (cDNA clone:J013091C10, full insert sequence) Q10SN1 Q10SN1_ORYSJ LOC_Os03g02560 Os03g0116800 OSNPB_030116800 ENOG411DSIK RAD17,ATRAD17 Q9MBA3,A0A1P8B9K3 RAD17_ARATH,A0A1P8B9K3_ARATH Cell cycle checkpoint protein RAD17 (AtRAD17) (Radiation-sensitive protein 17),RADIATION SENSITIVE 17 DISRUPTION PHENOTYPE: Suppressor of sni1 mutation symptoms including the accumulation of DNA damage leading to a constitutively activated DNA damage responses (DDR) and increased basal expression of pathogenesis-related (PR) genes. {ECO:0000269|PubMed:24207055}. increased sensitivity to the DNA-damaging chemicals bleomycin and mitomycin C (MMC) Sensitive to DNA damaging agents; Increased intrachromosomal recombination frequency-H. Puchta-2004 FUNCTION: Seems to be involved in regulation of DNA repair correlated to non-homologous double strand breaks (DSBs) repair. In vitro, involved in rapid but not in slow DSB repair mechanism. Required for effective immune responses that involve activation of DNA damage responses (PubMed:24207055). {ECO:0000269|PubMed:15165187, ECO:0000269|PubMed:24207055}. 66819,65037 Cell cycle checkpoint protein RAD17 (AtRAD17) (Radiation-sensitive protein 17),RADIATION SENSITIVE 17 nuclear chromatin [GO:0000790]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; defense response [GO:0006952]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281]; mitotic DNA replication checkpoint [GO:0033314]; regulation of defense response [GO:0031347]; regulation of DNA repair [GO:0006282],nucleus [GO:0005634]; cell cycle [GO:0007049]; DNA repair [GO:0006281] locus:2156952; AT5G66130 cell cycle checkpoint protein NA NA NA NA NA NA NA ENOG411DSIT Q84JV3 Q84JV3_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g31020) 33212 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g31020) hydrolase activity [GO:0016787] locus:2126704; AT4G31020 abhydrolase domain-containing protein Os02g0796600 protein Q6KAK2 Q6KAK2_ORYSJ Os02g0796600 Os02g0796600 OJ1004_E04.17 OSNPB_020796600 ENOG411DSIU Q5XV54 Q5XV54_ARATH BZIP transcription factor, putative (DUF630 and DUF632) 74197 BZIP transcription factor, putative (DUF630 and DUF632) locus:2135292; AT4G39790 DUF630 DUF632 domains containing protein Os05g0172300 protein (cDNA, clone: J065052C17, full insert sequence),Os05g0255800 protein (Fragment) Q65XR1,A0A0P0WK74 Q65XR1_ORYSJ,A0A0P0WK74_ORYSJ Os05g0172300 OSNPB_050172300 P0685E10.19,Os05g0255800 OSNPB_050255800 ENOG411DSIV B9DFE9,Q940M8,A0A1P8AMH3,F4HRY1,A8MQG9,B3H655,F4IAN4 B9DFE9_ARATH,Q940M8_ARATH,A0A1P8AMH3_ARATH,F4HRY1_ARATH,A8MQG9_ARATH,B3H655_ARATH,F4IAN4_ARATH 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) (AT1G73650 protein),3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) (At1g73650/F25P22_7),3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) 33059,32960,33442,34417,23731,25086,35200 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) (AT1G73650 protein),3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) (At1g73650/F25P22_7),3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; lipid metabolic process [GO:0006629],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; lipid metabolic process [GO:0006629],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; lipid metabolic process [GO:0006629] locus:2027774;,locus:2194090; AT1G73650,AT1G18180 Protein of unknown function (DUF1295) Expressed protein (Os03g0708400 protein) (cDNA clone:J013052J02, full insert sequence) Q10E47 Q10E47_ORYSJ Os03g0708400 LOC_Os03g50070 Os03g0708400 OsJ_12291 OSJNBb0022E02.10 OSNPB_030708400 ENOG411DSIW CCT4 Q9LV21 TCPD_ARATH T-complex protein 1 subunit delta (TCP-1-delta) (CCT-delta) (Chaperonin CCT4) FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. {ECO:0000305}. R-ATH-390471;R-ATH-6814122; 57775 T-complex protein 1 subunit delta (TCP-1-delta) (CCT-delta) (Chaperonin CCT4) chaperonin-containing T-complex [GO:0005832]; cytosol [GO:0005829]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; response to cadmium ion [GO:0046686] locus:2092697; AT3G18190 T-complex protein 1 subunit delta T-complex protein 1 subunit delta,Os02g0332200 protein (Fragment),Os08g0455100 protein Q6YUK5,Q9FW88,A0A0P0VIE7,A0A0P0XGR0 Q6YUK5_ORYSJ,Q9FW88_ORYSJ,A0A0P0VIE7_ORYSJ,A0A0P0XGR0_ORYSJ Os02g0332200 OsJ_23870 OSJNBb0037J12.26 OSNPB_020332200,LOC_Os10g37060 Os10g0514600 OSJNBa0026L12.9 OSNPB_100514600,Os02g0332200 OSNPB_020332200,Os08g0455100 OSNPB_080455100 FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. {ECO:0000256|SAAS:SAAS00901419}. ENOG411DSIP MQJ2.14 Q0WN89,F4K6K4 Q0WN89_ARATH,F4K6K4_ARATH Protein kinase like protein (Protein kinase superfamily protein),Protein kinase superfamily protein 66227,64458 Protein kinase like protein (Protein kinase superfamily protein),Protein kinase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2171213;,locus:2182905; AT5G58520,AT5G07140 kinase family Os03g0295600 protein (Protein kinase family protein, putative, expressed) (cDNA clone:J033086F15, full insert sequence) Q10MU0 Q10MU0_ORYSJ LOC_Os03g18430 Os03g0295600 OsJ_10477 OSNPB_030295600 ENOG411DSIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase M16 inactive domain Os01g0558900 protein (Fragment) Q0JLX6 Q0JLX6_ORYSJ Os01g0558900 Os01g0558900 OSNPB_010558900 ENOG411DSIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411DSIS SCPL37,SCPL53,SCPL38,SCPL39,SCPL40,SCPL36 Q84WF0,Q9LXY6,Q9ZUG3,Q9SV02,Q0WRX3,Q9SV04 SCP37_ARATH,SCP53_ARATH,SCP38_ARATH,SCP39_ARATH,SCP40_ARATH,SCP36_ARATH Serine carboxypeptidase-like 37 (EC 3.4.16.-),Putative serine carboxypeptidase-like 53,Serine carboxypeptidase-like 38 (EC 3.4.16.-),Serine carboxypeptidase-like 39 (EC 3.4.16.-),Serine carboxypeptidase-like 40 (EC 3.4.16.-),Serine carboxypeptidase-like 36 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 54915,29737,54731,56553,56240,54359 Serine carboxypeptidase-like 37 (EC 3.4.16.-),Putative serine carboxypeptidase-like 53,Serine carboxypeptidase-like 38 (EC 3.4.16.-),Serine carboxypeptidase-like 39 (EC 3.4.16.-),Serine carboxypeptidase-like 40 (EC 3.4.16.-),Serine carboxypeptidase-like 36 (EC 3.4.16.-) extracellular region [GO:0005576]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in seedlings, flowers and siliques. {ECO:0000269|PubMed:15908604}. locus:2083705;,locus:2102634;,locus:2064737;,locus:2083720;,locus:2087368;,locus:2083695; AT3G52010,AT3G56540,AT2G05850,AT3G52020,AT3G63470,AT3G52000 Serine Carboxypeptidase Carboxypeptidase (EC 3.4.16.-) (Fragment),Carboxypeptidase (EC 3.4.16.-),Os06g0242100 protein,Os09g0462901 protein Q0D401,A0A0P0VZ12,A0A0P0XMW9,A0A0P0WUI9,A0A0P0XNB0 Q0D401_ORYSJ,A0A0P0VZ12_ORYSJ,A0A0P0XMW9_ORYSJ,A0A0P0WUI9_ORYSJ,A0A0P0XNB0_ORYSJ Os07g0656900 Os07g0656900 OSNPB_070656900,Os03g0386700 OSNPB_030386700,Os09g0462875 OSNPB_090462875,Os06g0242100 OSNPB_060242100,Os09g0462901 OSNPB_090462901 ENOG411DSIX NUB1 Q500V3 Q500V3_ARATH At2g12550 (Ubiquitin-associated (UBA)/TS-N domain-containing protein) 62081 At2g12550 (Ubiquitin-associated (UBA)/TS-N domain-containing protein) locus:2060754; AT2G12550 NEDD8 ultimate buster Os04g0644300 protein (Fragment) Q0J9L6 Q0J9L6_ORYSJ Os04g0644300 Os04g0644300 OSNPB_040644300 ENOG411DSIY CYCC1-1,CYCC1-2 Q9FJK6,Q9FJK7,A0A1P8BBV3,F4K359,A0A1P8BBV4 CCC11_ARATH,CCC12_ARATH,A0A1P8BBV3_ARATH,F4K359_ARATH,A0A1P8BBV4_ARATH Cyclin-C1-1 (CycC1;1),Cyclin-C1-2 (CycC1;2),Cyclin family protein 29915,29845,21940,30214,24248 Cyclin-C1-1 (CycC1;1),Cyclin-C1-2 (CycC1;2),Cyclin family protein cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; mediator complex [GO:0016592]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944],mediator complex [GO:0016592]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538] locus:2152556;,locus:2152541; AT5G48640,AT5G48630 K15161 cyclin C Cyclin-C1-1 (CycC1;1) P93411 CCC11_ORYSJ Os09g0504400 LOC_Os09g32680 ENOG411DSIZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Haemolysin-III related Haemolysin-III related family protein, expressed (Os12g0511200 protein) Q2QQ07 Q2QQ07_ORYSJ Os12g0511200 LOC_Os12g32640 Os12g0511200 OSNPB_120511200 ENOG411EG1R Q5RM09 Y1592_ARATH B3 domain-containing protein At1g05920 36477 B3 domain-containing protein At1g05920 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2198758; AT1G05920 Domain of unknown function (DUF313) NA NA NA NA NA NA NA ENOG411EG1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Acyltransferase NA NA NA NA NA NA NA ENOG411EEE4 ATMYB69 Q9SZC2 Q9SZC2_ARATH MYB transcription factor (Myb domain protein 69) (Putative transcription factor) 28936 MYB transcription factor (Myb domain protein 69) (Putative transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2119171; AT4G33450 myb domain protein 69 NA NA NA NA NA NA NA ENOG411EEE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cNMP NA NA NA NA NA NA NA ENOG411EEE0 GT-3A Q9SDW0 TGT3A_ARATH Trihelix transcription factor GT-3a (Trihelix DNA-binding protein GT-3a) FUNCTION: Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. 38273 Trihelix transcription factor GT-3a (Trihelix DNA-binding protein GT-3a) nucleus [GO:0005634]; identical protein binding [GO:0042802]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. locus:2179192; AT5G01380 SANT NA NA NA NA NA NA NA ENOG411DX2K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0323100 protein (Putative RING zinc finger protein) (RING finger ubiquitin E3 ligase) (Zinc finger protein) (cDNA clone:J013037N18, full insert sequence) Q6K2E0 Q6K2E0_ORYSJ HTAS Os09g0323100 OSJNBb0024J13.14 OSNPB_090323100 ENOG411DX2H Q8W485 Y5010_ARATH Uncharacterized protein At5g50100, mitochondrial 24430 Uncharacterized protein At5g50100, mitochondrial mitochondrion [GO:0005739] locus:2170041; AT5G50100 Protein of unknown function DUF393 OSJNBa0043A12.15 protein (Os04g0668800 protein) (Thioredoxin-like protein) Q84P94 Q84P94_ORYSJ Os04g0668800 OSJNBa0043A12.15 OSNPB_040668800 ENOG411DX2I RPS18A; RPS18B; RPS18C P34788 RS18_ARATH 40S ribosomal protein S18 FUNCTION: Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA. {ECO:0000250}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 17545 40S ribosomal protein S18 cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ribosome [GO:0005840]; small ribosomal subunit [GO:0015935]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome biogenesis [GO:0042254]; translation [GO:0006412]; translational initiation [GO:0006413] locus:2005541;locus:2009066;locus:2199670; AT1G22780AT1G34030;AT4G09800; ribosomal protein 40S ribosomal protein S18, putative, expressed (Os03g0794700 protein) (Os07g0173501 protein) (Os07g0173700 protein) (Putative ribosomal protein S18) (Putative ribosomal protein S18A) (cDNA clone:001-007-B06, full insert sequence) (cDNA clone:001-029-F08, full insert sequence),Os07g0173700 protein (Putative ribosomal protein S18),Os07g0174200 protein (Fragment) Q8H590,Q8H588,A0A0P0X309 Q8H590_ORYSJ,Q8H588_ORYSJ,A0A0P0X309_ORYSJ OJ1656_E11.104 Os07g0173501 OSJNBb0021G19.20 OSJNBb0060J21.1 LOC_Os03g58050 Os03g0794700 Os07g0173700 OsJ_23275 OSNPB_030794700 OSNPB_070173501 P0496D04.44,OJ1656_E11.108 Os07g0173700 OsJ_23277 OSNPB_070173700 P0496D04.48,Os07g0174200 OSNPB_070174200 ENOG411DX2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD finger protein PHD finger protein ALFIN-LIKE 5,PHD finger protein ALFIN-LIKE 6,Os01g0887700 protein (Fragment) Q60DW3,Q7F2Z1,A0A0P0VBC7,A0A0P0VBD0 ALFL5_ORYSJ,ALFL6_ORYSJ,A0A0P0VBC7_ORYSJ,A0A0P0VBD0_ORYSJ Os05g0419100 LOC_Os05g34640 OsJ_18575 P0426G01.9,Os01g0887700 LOC_Os01g66420 B1099D03.10 OsJ_04343 P0434C04.30,Os01g0887700 OSNPB_010887700 FUNCTION: Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. {ECO:0000250}. ENOG411DX2M NUP43 Q24JJ9 NUP43_ARATH Nuclear pore complex protein NUP43 (Nucleoporin 43) 39354 Nuclear pore complex protein NUP43 (Nucleoporin 43) chloroplast [GO:0009507]; nuclear envelope [GO:0005635]; nuclear pore outer ring [GO:0031080]; mRNA transport [GO:0051028]; protein transport [GO:0015031] locus:2126689; AT4G30840 WD-40 repeat protein family Os08g0266600 protein (Putative Nucleoporin Nup43) Q6YTK1 Q6YTK1_ORYSJ Os08g0266600 Os08g0266600 OSJNBa0023I13.36 OSNPB_080266600 ENOG411DX2G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: repeat-containing protein Os11g0576100 protein,Os03g0447100 protein Q2R274,A0A0P0W043 Q2R274_ORYSJ,A0A0P0W043_ORYSJ Os11g0576100 LOC_Os11g36760 OsJ_34347 OSNPB_110576100,Os03g0447100 OSNPB_030447100 ENOG411DX2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor C-1b (Heat stress transcription factor 11) (rHsf11) (Heat stress transcription factor 3) (OsHsf-03) Q942D6 HFC1B_ORYSJ HSFC1B HSF03 HSF11 Os01g0733200 LOC_Os01g53220 B1060H01.5 OsJ_012463 OSJNBb0036G09.16 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411DX2Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Expressed protein (Os12g0250900 protein) (cDNA clone:002-184-D06, full insert sequence),Os08g0414200 protein Q2QUW8,Q6Z553 Q2QUW8_ORYSJ,Q6Z553_ORYSJ Os12g0250900 LOC_Os12g14840 Os12g0250900 OSNPB_120250900,Os08g0414200 Os08g0414200 OsJ_27307 OSJNBa0007M04.36 OSNPB_080414200 ENOG411DX2X ''cytochrome P450,CYP81K2 Q9LXB3,F4KI78 Q9LXB3_ARATH,F4KI78_ARATH Cytochrome P450, family 81, subfamily K, polypeptide 1 (Cytochrome P450-like protein),Cytochrome P450, family 81, subfamily K, polypeptide 2 ARA:AT5G10610-MONOMER; 57317,59110 Cytochrome P450, family 81, subfamily K, polypeptide 1 (Cytochrome P450-like protein),Cytochrome P450, family 81, subfamily K, polypeptide 2 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550] locus:2142494;,locus:2142509; AT5G10610,AT5G10600 cytochrome P450 NA NA NA NA NA NA NA ENOG411DX2Y Q8GX31,Q8LFH3,F4IU76,F4JZN1 Q8GX31_ARATH,Q8LFH3_ARATH,F4IU76_ARATH,F4JZN1_ARATH At3g48230 (Carboxyl-terminal peptidase (DUF239)) (Uncharacterized protein At3g48230/T24C20_110),At5g18460 (Carboxyl-terminal peptidase (DUF239)) (Uncharacterized protein At5g18460),Uncharacterized protein,NEP-interacting protein, putative (DUF239) 42002,48440,18547,44113 At3g48230 (Carboxyl-terminal peptidase (DUF239)) (Uncharacterized protein At3g48230/T24C20_110),At5g18460 (Carboxyl-terminal peptidase (DUF239)) (Uncharacterized protein At5g18460),Uncharacterized protein,NEP-interacting protein, putative (DUF239) locus:2100434;,locus:2146258;,locus:2049686;,locus:2182167; AT3G48230,AT5G18460,AT2G03930,AT5G19170 Domain of unknown function (DUF239) Os08g0566100 protein (cDNA clone:002-129-A10, full insert sequence) Q0J3L1 Q0J3L1_ORYSJ Os08g0566100 Os08g0566100 OSNPB_080566100 ENOG411DX2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA actin cytoskeleton organization Formin-like protein 2 (OsFH2),Formin-like protein 9 (OsFH9),Os08g0431200 protein (Fragment),Os09g0350400 protein Q7XUV2,Q6ZKB2,A0A0P0XG94,A0A0P0XLR4 FH2_ORYSJ,FH9_ORYSJ,A0A0P0XG94_ORYSJ,A0A0P0XLR4_ORYSJ FH2 Os04g0461800 LOC_Os04g38810 B1358B12.6 OSJNBa0072F16.14,FH9 Os08g0431200 LOC_Os08g33430 OJ1111_B08.10 OJ1124_B05.19 OsJ_026308,Os08g0431200 OSNPB_080431200,Os09g0350400 OSNPB_090350400 ENOG411DX28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KIP1-like protein Kinase interacting protein 1-like (Os01g0168100 protein) (p0028E10.16 protein),Os05g0168800 protein (cDNA clone:J033029G04, full insert sequence),Os01g0168100 protein (Fragment),Os05g0168800 protein (Fragment) Q9AS76,Q60DT8,A0A0P0UZ11,A0A0P0WIE6 Q9AS76_ORYSJ,Q60DT8_ORYSJ,A0A0P0UZ11_ORYSJ,A0A0P0WIE6_ORYSJ P0028E10.16 Os01g0168100 OJ1276_B06.14 OSNPB_010168100 P0701D05.42,Os05g0168800 OsJ_17271 OSJNBa0086E02.17 OSNPB_050168800,Os01g0168100 OSNPB_010168100,Os05g0168800 OSNPB_050168800 ENOG411DX29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease OSJNBb0086G13.12 protein (Os04g0435100 protein) (cDNA clone:J013155C12, full insert sequence) Q7XUT0 Q7XUT0_ORYSJ Os04g0435100 OsJ_14882 OSJNBb0086G13.12 OSNPB_040435100 ENOG411DX22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heterogeneous nuclear ribonucleoprotein NA NA NA NA NA NA NA ENOG411DX23 PCMP-H68 Q9FX24,A0A1P8ATT9 PPR71_ARATH,A0A1P8ATT9_ARATH Pentatricopeptide repeat-containing protein At1g34160,Tetratricopeptide repeat (TPR)-like superfamily protein 65453,60233 Pentatricopeptide repeat-containing protein At1g34160,Tetratricopeptide repeat (TPR)-like superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mitochondrial mRNA modification [GO:0080156],zinc ion binding [GO:0008270] locus:2009006; AT1G34160 Pentatricopeptide repeat-containing protein Pentatricopeptide repeat-containing protein OGR1, mitochondrial (Protein OPAQUE AND GROWTH RETARDATION 1),Os06g0226066 protein B8YEK4,A0A0P0WUN9 OGR1_ORYSJ,A0A0P0WUN9_ORYSJ OGR1 Os12g0270200 LOC_Os12g17080,Os06g0226066 OSNPB_060226066 DISRUPTION PHENOTYPE: Opaque seed endosperm, late germination of seeds and plant retarded growth. FUNCTION: Involved in multiple sites RNA editing events in mitochondria. Essential for C-to-U RNA editing at seven specific sites of nad2, nad4, cox2, cox3 and ccmC transcripts, all coding for proteins involved in the mitochondrial electron transport chain coupled to ATP generation. Required for normal growth and development. {ECO:0000269|PubMed:19453459}. ENOG411DX21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX27 Q8GZ67 Q8GZ67_ARATH At1g68160 (Uncharacterized protein At1g68160/T22E19_21) (ZZ-type zinc finger protein, putative (DUF3755)) 30346 At1g68160 (Uncharacterized protein At1g68160/T22E19_21) (ZZ-type zinc finger protein, putative (DUF3755)) locus:2199302; AT1G68160 Protein of unknown function (DUF3755) Os02g0631200 protein (cDNA clone:J023145J08, full insert sequence),Os02g0631200 protein (cDNA clone:001-205-A07, full insert sequence) Q0DZC5,Q6H473 Q0DZC5_ORYSJ,Q6H473_ORYSJ Os02g0631200 Os02g0631200 OSNPB_020631200,B1250G12.9-1 Os02g0631200 OSNPB_020631200 ENOG411DX24 ATG4B,ATG4A Q9M1Y0,Q8S929,A0A1P8B152,A0A1P8B129,A0A1I9LMQ8,A0A1I9LMQ9,F4J9I3 ATG4B_ARATH,ATG4A_ARATH,A0A1P8B152_ARATH,A0A1P8B129_ARATH,A0A1I9LMQ8_ARATH,A0A1I9LMQ9_ARATH,F4J9I3_ARATH Cysteine protease ATG4b (EC 3.4.22.-) (Autophagy-related protein 4 homolog b) (AtAPG4b) (Protein autophagy 4b),Cysteine protease ATG4a (EC 3.4.22.-) (Autophagy-related protein 4 homolog a) (AtAPG4a) (Protein autophagy 4a),Cysteine protease (EC 3.4.22.-) FUNCTION: Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. ATG8 is then activated by ATG7 and is subsequently attached to ATG3, another E2-like enzyme, after which the C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes. R-ATH-1632852; 3.4.22.- 52202,51529,42424,42622,42880,43235,39649 Cysteine protease ATG4b (EC 3.4.22.-) (Autophagy-related protein 4 homolog b) (AtAPG4b) (Protein autophagy 4b),Cysteine protease ATG4a (EC 3.4.22.-) (Autophagy-related protein 4 homolog a) (AtAPG4a) (Protein autophagy 4a),Cysteine protease (EC 3.4.22.-) cytosol [GO:0005829]; cysteine-type endopeptidase activity [GO:0004197]; autophagosome assembly [GO:0000045]; autophagy of mitochondrion [GO:0000422]; C-terminal protein lipidation [GO:0006501]; nucleophagy [GO:0044804]; protein delipidation [GO:0051697]; protein targeting to membrane [GO:0006612],cytoplasm [GO:0005737]; cysteine-type peptidase activity [GO:0008234]; autophagy [GO:0006914]; protein transport [GO:0015031] TISSUE SPECIFICITY: Contitutively expressed. {ECO:0000269|PubMed:15494556}. locus:2080447;,locus:2051754; AT3G59950,AT2G44140 Cysteine protease required for autophagy which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form with a revealed C-terminal glycine Cysteine protease ATG4A (EC 3.4.22.-) (Autophagy-related protein 4 homolog A),Cysteine protease ATG4B (EC 3.4.22.-) (Autophagy-related protein 4 homolog B) Q75KP8,Q7XPW8 ATG4A_ORYSJ,ATG4B_ORYSJ ATG4A APG4A Os03g0391000 LOC_Os03g27350 OsJ_010666 OSJNBa0017N12.1 OSJNBa0065F09.1,ATG4B APG4B Os04g0682000 LOC_Os04g58560 OSJNBa0032F06.13 FUNCTION: Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. The C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes (By similarity). {ECO:0000250}. ENOG411EG14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DRY_EERY NA NA NA NA NA NA NA ENOG411EEEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EEET CHX6b P0CG16 CHX6B_ARATH Cation/H(+) antiporter 6B (Protein CATION/H+ EXCHANGER 6b) (AtCHX6b) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 90112 Cation/H(+) antiporter 6B (Protein CATION/H+ EXCHANGER 6b) (AtCHX6b) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Preferentially expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:1005716662; AT1G08135 CATION H EXCHANGER 6b NA NA NA NA NA NA NA ENOG411EEEW O49435,Q9FIZ1 O49435_ARATH,Q9FIZ1_ARATH Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase),C2 domain-containing protein (C2 domain-containing protein-like) 87772,53934 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase),C2 domain-containing protein (C2 domain-containing protein-like) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2119742;,locus:2156324; AT4G20080,AT5G44760 Plant phosphoribosyltransferase C-terminal NA NA NA NA NA NA NA ENOG411EEEV CYP705A1 Q0WQ07,A0A1P8B8J8 Q0WQ07_ARATH,A0A1P8B8J8_ARATH Cytochrome P450 like protein (Cytochrome P450, family 705, subfamily A, polypeptide 1),Cytochrome P450, family 705, subfamily A, polypeptide 1 ARA:AT4G15330-MONOMER; 58495,55218 Cytochrome P450 like protein (Cytochrome P450, family 705, subfamily A, polypeptide 1),Cytochrome P450, family 705, subfamily A, polypeptide 1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2129980; AT4G15330 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EEEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain NA NA NA NA NA NA NA ENOG411EEES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Guanylate-binding protein C-terminal domain Os05g0563050 protein (Fragment) A0A0P0WQU7 A0A0P0WQU7_ORYSJ Os05g0563050 OSNPB_050563050 ENOG411EEEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sensory histidine protein kinase NA NA NA NA NA NA NA ENOG411EIHQ WIH1,WIH2,WIH3 Q9FJW3,Q8S8M0,F4IZ80 WIH1_ARATH,WIH2_ARATH,F4IZ80_ARATH Cysteine-rich and transmembrane domain-containing protein WIH1 (Protein WINDHOSE 1),Cysteine-rich and transmembrane domain-containing protein WIH2 (Cysteine-rich and transmembrane domain-containing protein A) (Protein WINDHOSE 2),Cysteine-rich TM module stress tolerance protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but flowers of the double mutants wih1-1 and wih2-1 have defect in megasporgogenesis. Doubl mutant plants display retarded growth, and twisted leaves, siliques and roots. {ECO:0000269|PubMed:21658947}. FUNCTION: Required for the promotion of megasporogenesis, or promotion of germ cell formation from somatic precursor cells. Acts redundantly with WIH2. Functions in a genetic pathway downstream of SPL/NZZ and WUS and together with TRN2 in promoting megasporogenesis. {ECO:0000269|PubMed:21658947}.,FUNCTION: Required for the promotion of megasporogenesis, or promotion of germ cell formation from somatic precursor cells. Acts redundantly with WIH1. Functions in a genetic pathway downstream of SPL/NZZ and WUS and together with TRN2 in promoting megasporogenesis. {ECO:0000269|PubMed:21658947}. 8711,10728,13354 Cysteine-rich and transmembrane domain-containing protein WIH1 (Protein WINDHOSE 1),Cysteine-rich and transmembrane domain-containing protein WIH2 (Cysteine-rich and transmembrane domain-containing protein A) (Protein WINDHOSE 2),Cysteine-rich TM module stress tolerance protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; megasporogenesis [GO:0009554],plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006] DEVELOPMENTAL STAGE: During ovule development, expressed in the nucellus from early stage until embryo sac maturity. {ECO:0000269|PubMed:21658947}.,DEVELOPMENTAL STAGE: During ovule development, expressed in the nucellus from early stage until embryo sac maturity. In mature ovules, expressed in the nucellus and the outer integument. {ECO:0000269|PubMed:21658947}. TISSUE SPECIFICITY: Expressed in root meristem, root vasculature, leaf vasculature and floral organ primordia. {ECO:0000269|PubMed:21658947}.,TISSUE SPECIFICITY: Expressed in floral organ primordia. {ECO:0000269|PubMed:21658947}. locus:2158631;,locus:2040332;,locus:4515103232; AT5G67600,AT2G41420,AT3G49845 NA NA NA NA NA NA NA NA ENOG411EIHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family Os02g0172000 protein (Fragment) A0A0P0VFC4 A0A0P0VFC4_ORYSJ Os02g0172000 OSNPB_020172000 ENOG411E4HJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4HH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0497500 protein (Fragment) A0A0P0WWV9 A0A0P0WWV9_ORYSJ Os06g0497500 OSNPB_060497500 ENOG411E4HM GATA1 Q8LAU9 GATA1_ARATH GATA transcription factor 1 (AtGATA-1) FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. 30114 GATA transcription factor 1 (AtGATA-1) nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623] TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. locus:2076191; AT3G24050 gata transcription factor NA NA NA NA NA NA NA ENOG411E4HG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional activator that binds specifically to the DNA sequence 5'- AG CCGAC-3'. Binding to the C-repeat DRE element mediates high salinity- and dehydration-inducible transcription (By similarity) Dehydration-responsive element-binding protein 1C (Protein DREB1C) (Protein C-repeat-binding factor 1) Q9LWV3 DRE1C_ORYSJ DREB1C CBF1 ERF26 Os06g0127100 LOC_Os06g03670 OsJ_019159 OSJNBa0038F22.13 P0425F02.47 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. ENOG411E4HF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4H7 PDIL5-1 Q8GYD1 PDI51_ARATH Protein disulfide-isomerase 5-1 (AtPDIL5-1) (Protein disulfide-isomerase 6-1) (AtPDIL6-1) FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}. R-ATH-114608; 16565 Protein disulfide-isomerase 5-1 (AtPDIL5-1) (Protein disulfide-isomerase 6-1) (AtPDIL6-1) endoplasmic reticulum [GO:0005783]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976] locus:2205145; AT1G07960 cell redox homeostasis Protein disulfide isomerase-like 5-1 (OsPDIL5-1) (Protein disulfide isomerase-like 6-1) (OsPDIL6-1) Q10N04 PDI51_ORYSJ PDIL5-1 PDIL6-1 Os03g0287900 LOC_Os03g17860 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411E4H6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA strictosidine synthase NA NA NA NA NA NA NA ENOG411E4H5 Q6GKX4,A0A1P8BEJ3 Q6GKX4_ARATH,A0A1P8BEJ3_ARATH Vesicle transport protein FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. {ECO:0000256|RuleBase:RU363111}. 17751,14079 Vesicle transport protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2151837; AT5G24170 vesicle transport protein Vesicle transport protein B7F8P3 B7F8P3_ORYSJ Os01g0219100 Os01g0219100 OsJ_00900 OSNPB_010219100 FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. {ECO:0000256|RuleBase:RU363111}. ENOG411E4H4 IAA34,IAA32 Q9C5X0,Q8RYC6,A0A1P8AW97 IAA34_ARATH,IAA32_ARATH,A0A1P8AW97_ARATH Auxin-responsive protein IAA34 (Indoleacetic acid-induced protein 34),Auxin-responsive protein IAA32 (Indoleacetic acid-induced protein 32),Auxin-responsive protein FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 21405,21662,17681 Auxin-responsive protein IAA34 (Indoleacetic acid-induced protein 34),Auxin-responsive protein IAA32 (Indoleacetic acid-induced protein 32),Auxin-responsive protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2196184;,locus:2038701; AT1G15050,AT2G01200 Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs) proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression NA NA NA NA NA NA NA ENOG411DU8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Laccase-8 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 8) (Diphenol oxidase 8) (Urishiol oxidase 8) Q0JHP8 LAC8_ORYSJ LAC8 Os01g0850800 LOC_Os01g63200 P0529H11.24 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411DU8X TAN Q84M91 TANB_ARATH Probable microtubule-binding protein TANGLED (AtTAN) aberrant division pattern FUNCTION: Is required for spatial control cell division during plant development. Through an association with microtubules, acts both for the positioning of cytoskeletal arrays that establish planes of cell division during prophase and for spatial guidance of expanding phragmoplasts toward preestablished cortical division sites (CDS) during cytokinesis (By similarity). {ECO:0000250}. 49524 Probable microtubule-binding protein TANGLED (AtTAN) microtubule associated complex [GO:0005875]; nucleolus [GO:0005730]; phragmoplast [GO:0009524]; preprophase band [GO:0009574]; phragmoplast assembly [GO:0000914] locus:2096279; AT3G05330 Inherit from KOG: Cyclin-dependent protein kinase Os02g0459300 protein (Fragment) A0A0P0VIN5 A0A0P0VIN5_ORYSJ Os02g0459300 OSNPB_020459300 ENOG411DU8Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os02g0671800 protein (cDNA clone:002-130-E02, full insert sequence),Orf490 protein B7F0F4,Q8HCR1 B7F0F4_ORYSJ,Q8HCR1_ORYSJ Os02g0671800 OSNPB_020671800,orf490 ENOG411DU8U T22K18.15 Q94JR1,Q9SR68 Q94JR1_ARATH,Q9SR68_ARATH AT3g10030/T22K18_15 (Aspartate/glutamate/uridylate kinase family protein),Aspartate/glutamate/uridylate kinase family protein (Putative uridylate kinase) ARA:AT3G10030-MONOMER; 59248,57004 AT3g10030/T22K18_15 (Aspartate/glutamate/uridylate kinase family protein),Aspartate/glutamate/uridylate kinase family protein (Putative uridylate kinase) cytoplasm [GO:0005737]; kinase activity [GO:0016301],kinase activity [GO:0016301] locus:2100108; AT3G10030 Amino acid kinase family Os04g0405800 protein (Fragment) A0A0N7KJ06 A0A0N7KJ06_ORYSJ Os04g0405800 OSNPB_040405800 ENOG411DU8T SKIP15 O49279 SKI15_ARATH SKP1-interacting partner 15 (F-box only protein 3) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 42494 SKP1-interacting partner 15 (F-box only protein 3) nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2025247; AT1G76920 Skp1-interacting partner Os04g0686700 protein (Fragment) A0A0P0WGS0 A0A0P0WGS0_ORYSJ Os04g0686700 OSNPB_040686700 ENOG411DU8W PHB5,PHB3,PHB4 Q9LY99,O04331,Q9LK25 PHB5_ARATH,PHB3_ARATH,PHB4_ARATH Prohibitin-5, mitochondrial (Atphb5),Prohibitin-3, mitochondrial (Atphb3) (Protein ENHANCED ETHYLENE RESPONSE 3),Prohibitin-4, mitochondrial (Atphb4) DISRUPTION PHENOTYPE: Extreme constitutive ethylene response in air associated with a partial loss of ethylene-inducible gene expression and an increased ethylene production. Mitochondrial swelling, decreased meristematic cell production, increased cell division time and reduced cell expansion rates, leading to severe growth retardation. Reduced sensitivity to salt stress and defective in H(2)O(2)-induced nitric oxide (NO) accumulation, light-induced NO in cotyledons, abscisic acid (ABA)-induced NO accumulation and stomatal closure, and in auxin-induced lateral root formation. {ECO:0000269|PubMed:17525078, ECO:0000269|PubMed:17883375, ECO:0000269|PubMed:20068191}. Delayed germination; Semi-dwarf; Small, curled rosette leaves; Slow root growth-F. Van Breusegem-2008 FUNCTION: Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins. {ECO:0000250}.,FUNCTION: Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins (By similarity). Necessary for mitochondrial and cell metabolism and biogenesis. Required to regulate the ethylene-mediated signaling; involved in growth maintenance in the presence of ethylene. Functions in nitric oxide (NO)-mediated responses and in hydrogen peroxide-induced NO accumulation. {ECO:0000250, ECO:0000269|PubMed:17525078, ECO:0000269|PubMed:17883375, ECO:0000269|PubMed:20068191}. 27392,30400,30638 Prohibitin-5, mitochondrial (Atphb5),Prohibitin-3, mitochondrial (Atphb3) (Protein ENHANCED ETHYLENE RESPONSE 3),Prohibitin-4, mitochondrial (Atphb4) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; cell division [GO:0051301]; cell growth [GO:0016049]; lateral root development [GO:0048527]; mitochondrion organization [GO:0007005]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to nitric oxide [GO:0071731]; response to salt stress [GO:0009651],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773] DEVELOPMENTAL STAGE: Observed in all organs primordia and meristems. In cotyledons, hypocotyls and differentiating leaves, present in stomatal meristemoid cells, guard mother cells and trichomes. Within the anthers, transiently expressed in the proximity of the sporogenous tissue. Accumulates in embryos at globular stages, except in suspensor cell. In root elongation zones, mostly present in epidermal cells, particularly in trichoblasts. {ECO:0000269|PubMed:17883375}. TISSUE SPECIFICITY: Mostly expressed in proliferative tissues, including vasculature, shoot and root apical tissues. Expressed in roots, stems, leaves, flowers and pollen (at protein level). {ECO:0000269|PubMed:16247729, ECO:0000269|PubMed:17525078, ECO:0000269|PubMed:17883375, ECO:0000269|PubMed:9132067}.,TISSUE SPECIFICITY: Mostly expressed in proliferative tissues, including vasculature, shoot and root apical tissues. Accumulates in dry seeds. {ECO:0000269|PubMed:16876910, ECO:0000269|PubMed:17883375}. locus:2145718;,locus:2154810;,locus:2086538; AT5G14300,AT5G40770,AT3G27280 prohibitin Os02g0580500 protein (Putative prohibitin),Os04g0462900 protein,B1358B12.15 protein (Os04g0462900 protein),Os04g0462900 protein (Fragment) Q6EP40,Q0JCL7,Q6MWE2,A0A0N7KJ67 Q6EP40_ORYSJ,Q0JCL7_ORYSJ,Q6MWE2_ORYSJ,A0A0N7KJ67_ORYSJ Os02g0580500 B1267B06.32 OJ1115_A05.7 OsJ_07270 OSNPB_020580500,Os04g0462900 Os04g0462900 OSNPB_040462900,B1358B12.15 Os04g0462900 OSNPB_040462900,Os04g0462900 OSNPB_040462900 ENOG411DU8V LDL3 F4JLS1 LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 3) (Protein LSD1-like 3) FUNCTION: Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin. {ECO:0000269|PubMed:17921315}. R-ATH-3214842; 1.-.-.- 179403 Lysine-specific histone demethylase 1 homolog 3 (EC 1.-.-.-) (Flavin-containing amine oxidase domain-containing protein 3) (Protein LSD1-like 3) nucleus [GO:0005634]; DNA binding [GO:0003677]; oxidoreductase activity [GO:0016491]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2130454; AT4G16310 amine oxidase Os10g0532150 protein,Os10g0532100 protein (Fragment) A0A0P0XWJ2,A0A0P0XWY0 A0A0P0XWJ2_ORYSJ,A0A0P0XWY0_ORYSJ Os10g0532150 OSNPB_100532150,Os10g0532100 OSNPB_100532100 ENOG411DU8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Heat shock protein NA NA NA NA NA NA NA ENOG411DU8P RPD1 Q689D6 RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1 DISRUPTION PHENOTYPE: Embryo lethal when homozygous. {ECO:0000269|PubMed:16407439}. Hypocotyl explants of the rpd1-1 mutant formed root-primordium-like structures after 16 days of culture at the restrictive temperature (28°C) on root-inducing medium whereas at the permissive temperature (22°C) they formed normal adventitious roots. The inhibitory effect of the rpd1 mutations on adventitious root formation was detected at the primordial stage after six days of culture.,Temperature-sensitive mutant. Initial root primordium formation in the mutant hypocotyl explants proceeded normally at the restrictive temperature (28°C) on root-inducing medium; after three days of culture the root primordium was arrested or strongly retarded at the two- to four-cell-layer stages. Therefore the mutation inhibited the development of adventitious root primordia beyond the two-cell-layer stage without affecting the earlier processes of primordium development including the initiation of cell proliferation. This developmental arrest was reversible upon temperature shift from 28°C to 22°C root primordial developed normally and formed lateral roots. Mutant hypocotyl explants were cultured on callus-inducing medium at 22°C or 28°C. During the first four days of culture callus growth appeared not to be affected in the mutant hypocotyls compared with that in the wild-type explants. After day 4 however callus growth in the mutant explants was retarded severely at 28°C.,temperature sensitive impaired in adventitious root formation in hypocotyl. Similar to rpd1-1 mutation Embryo defective; Transition-M. Sugiyama-2007 FUNCTION: Involved in pre-arranging the maintenance of the active cell proliferation during root primordium development. Does not seem to be involved in cell cycle progression. {ECO:0000269|PubMed:16407439}. 48286 Protein ROOT PRIMORDIUM DEFECTIVE 1 lateral root morphogenesis [GO:0010102]; negative regulation of cell proliferation [GO:0008285] TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons and shoot apex. {ECO:0000269|PubMed:16407439}. locus:504955534; AT4G33495 Plant organelle RNA recognition domain Os01g0617600 protein,Os09g0526000 protein (Fragment) A0A0P0V5B6,A0A0P0XQD4 A0A0P0V5B6_ORYSJ,A0A0P0XQD4_ORYSJ Os01g0617600 OSNPB_010617600,Os09g0526000 OSNPB_090526000 ENOG411DU8S PBRP1,PBRP O23215,A8MR42 PBRP1_ARATH,A8MR42_ARATH Plant-specific TFIIB-related protein 1 (Plant-specific TFIIB-related protein) (AtPBRP) (TFIIB-related protein PBRP1),Plant-specific TFIIB-related protein FUNCTION: Plant-specific TFIIB-related protein that may be involved in an intracellular signaling pathway between plastids and the nucleus (PubMed:12697827). May act as general transcription factor (GTF) of RNA polymerase I-dependent transcription and rRNA synthesis. Forms a ternary complex with TBP2 and the rDNA promoter region (PubMed:18668124). {ECO:0000269|PubMed:12697827, ECO:0000269|PubMed:18668124}. 55672,40806 Plant-specific TFIIB-related protein 1 (Plant-specific TFIIB-related protein) (AtPBRP) (TFIIB-related protein PBRP1),Plant-specific TFIIB-related protein chloroplast outer membrane [GO:0009707]; nucleus [GO:0005634]; plastid outer membrane [GO:0009527]; metal ion binding [GO:0046872]; rDNA binding [GO:0000182]; TBP-class protein binding [GO:0017025]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; regulation of transcription, DNA-templated [GO:0006355],TBP-class protein binding [GO:0017025]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:12697827}. locus:2115255; AT4G36650 transcription initiation factor Os03g0196900 protein (Fragment) Q0DUA7 Q0DUA7_ORYSJ Os03g0196900 OSNPB_030196900 ENOG411DU8M DRP3A,DRP3B Q8S944,Q8LFT2,F4IFG2,A0A1P8AX46,F4IFG1,F4JJ15 DRP3A_ARATH,DRP3B_ARATH,F4IFG2_ARATH,A0A1P8AX46_ARATH,F4IFG1_ARATH,F4JJ15_ARATH Dynamin-related protein 3A (Dynamin-like protein 2) (Dynamin-like protein 2a),Dynamin-related protein 3B (Dynamin-like protein 2b),Dynamin related protein,Dynamin-related protein 3A DISRUPTION PHENOTYPE: Reduced plant growth. Increase in the size of peroxisomes and decrease in the number of peroxisomes per cell. Elongated mitochondria. {ECO:0000269|PubMed:18785999}.,DISRUPTION PHENOTYPE: Reduced plant growth. Increase in the size of peroxisomes and decrease in the number of peroxisomes per cell. {ECO:0000269|PubMed:18785999}. Peroxisomes defective. Division is abnormal and peroxisomes have aberrant morphology (observed in plants carrying an marker-YFP-PTS1).,Elongated mitochondria which sometimes form interconnected networks. Enlarged leaf peroxisomes. Elongated root peroxisomes.,Plants are slower growing than single mutants or non-mutant siblings. Pale mutant color due to decreased number of mitochondria and peroxisomes.,Abnormal peroxisome morphology as observed in mutants that contain a peroxisome marker (YFP–PTS1). Aberrant peroxisome division. Slow growth. Severely elongated mitochondria; No other phenotypes detected-N. Tsutsumi-2008,Elongated mitochondria; Abnormal peroxisome division; No other phenotypes detected-J. Hu-2009 FUNCTION: Involved in the control of mitochondrial and peroxisomal division and morphology. In association with PEX11C, PEX11D, PEX11E and FIS1B, is involved in cell cycle-associated constitutive self-replication of preexisting peroxisomes. {ECO:0000269|PubMed:14754924, ECO:0000269|PubMed:14988495, ECO:0000269|PubMed:18539750, ECO:0000269|PubMed:18785999}.,FUNCTION: Involved in the control of mitochondrial and peroxisomal division and morphology. {ECO:0000269|PubMed:14754924, ECO:0000269|PubMed:14988495, ECO:0000269|PubMed:18785999}. ARA:AT4G33650-MONOMER; 89627,86644,89836,81782,86692,89755 Dynamin-related protein 3A (Dynamin-like protein 2) (Dynamin-like protein 2a),Dynamin-related protein 3B (Dynamin-like protein 2b),Dynamin related protein,Dynamin-related protein 3A mitochondrion [GO:0005739]; peroxisome [GO:0005777]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; identical protein binding [GO:0042802]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; peroxisome organization [GO:0007031],mitochondrion [GO:0005739]; peroxisome [GO:0005777]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; peroxisome organization [GO:0007031],cytosol [GO:0005829]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; peroxisome fission [GO:0016559],GTP binding [GO:0005525]; GTPase activity [GO:0003924],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; cytosol [GO:0005829]; membrane [GO:0016020]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; phosphatidylinositol binding [GO:0035091]; peroxisome fission [GO:0016559]; regulation of peroxisome size [GO:0044375] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in flowers. {ECO:0000269|PubMed:9747851}. locus:2059445;,locus:2134198; AT4G33650,AT2G14120 dynamin-related protein Os01g0920400 protein (Putative dynamin like protein 2a) Q5JJJ5 Q5JJJ5_ORYSJ B1793G04.8-1 P0678F11.35-1 Os01g0920400 OSNPB_010920400 ENOG411DU8N HHP5,HHP4 Q9SVF3,Q9SZG0,Q9SVF6,A0A1P8B728,F4II26 HPP5_ARATH,HHP4_ARATH,Q9SVF6_ARATH,A0A1P8B728_ARATH,F4II26_ARATH Heptahelical transmembrane protein 5 (PAQR family protein HHP5),Heptahelical transmembrane protein 4 (PAQR family protein HHP4),Hemolysin-III related integral membrane protein (Uncharacterized protein AT4g38290) (Uncharacterized protein F22I13.60),Heptahelical protein 4,Hemolysin-III related integral membrane protein FUNCTION: May play a role in abiotic stress response. {ECO:0000250}. 42786,44172,11990,44804,10543 Heptahelical transmembrane protein 5 (PAQR family protein HHP5),Heptahelical transmembrane protein 4 (PAQR family protein HHP4),Hemolysin-III related integral membrane protein (Uncharacterized protein AT4g38290) (Uncharacterized protein F22I13.60),Heptahelical protein 4,Hemolysin-III related integral membrane protein integral component of membrane [GO:0016021]; receptor activity [GO:0004872]; response to hormone [GO:0009725]; response to sucrose [GO:0009744],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16263907}. locus:2121808;,locus:2120140;,locus:2121778;,locus:2064834; AT4G38320,AT4G37680,AT4G38290,AT2G40710 Receptor Heptahelical transmembrane protein ADIPOR3 (PAQR family protein ADIPOR3) Q10PI5 ADPO3_ORYSJ ADIPOR3 Os03g0232900 LOC_Os03g13040 OJ1175C11.13 FUNCTION: May play a role in abiotic stress response. {ECO:0000250}. ENOG411DU8I F4K6W1 F4K6W1_ARATH O-Glycosyl hydrolases family 17 protein 54566 O-Glycosyl hydrolases family 17 protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2147112; AT5G20870 glucan endo-1-3-beta-glucosidase Os03g0397600 protein A0A0P0VYH3 A0A0P0VYH3_ORYSJ Os03g0397600 OSNPB_030397600 ENOG411DU8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial trigger factor protein (TF) Os01g0894700 protein Q5JLV2 Q5JLV2_ORYSJ Os01g0894700 Os01g0894700 B1078G07.49 OSNPB_010894700 ENOG411DU8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit family protein Exo70 exocyst complex subunit family protein (Os03g0448200 protein) (Putative leucine zipper protein),Os12g0100700 protein,Exo70 exocyst complex subunit family protein (Os11g0649900 protein) (Os11g0650100 protein) (Os11g0650700 protein),Os11g0100800 protein Q84T49,B9G8X5,Q2R0C3,A0A0P0XXS6 Q84T49_ORYSJ,B9G8X5_ORYSJ,Q2R0C3_ORYSJ,A0A0P0XXS6_ORYSJ Os03g0448200 LOC_Os03g33520 OSJNBa0031I04.7 OSNPB_030448200,Os12g0100700 OsJ_32624 OSNPB_120100700,Os11g0650700 Os11g0649900 LOC_Os11g42989 LOC_Os11g43049 Os11g0650100 OsJ_01642 OSNPB_110649900 OSNPB_110650700,Os11g0100800 OSNPB_110100800 ENOG411DU8J AARE Q84LM4 AARE_ARATH Acylamino-acid-releasing enzyme (AARE) (EC 3.4.19.1) (Oxidized protein hydrolase) (OPH) FUNCTION: Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphoshate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins (PubMed:12966075). Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm (PubMed:22398639). {ECO:0000269|PubMed:12966075, ECO:0000269|PubMed:22398639}. MISCELLANEOUS: Plants silencing AARE show enhanced ion leakage after oxidative treatment. {ECO:0000269|PubMed:22398639}. ARA:AT4G14570-MONOMER; 3.4.19.1; 3.4.19.1 83938 Acylamino-acid-releasing enzyme (AARE) (EC 3.4.19.1) (Oxidized protein hydrolase) (OPH) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; vacuole [GO:0005773]; serine-type aminopeptidase activity [GO:0070009]; protein homotetramerization [GO:0051289]; proteolysis [GO:0006508] locus:2129920; AT4G14570 Acylamino-acid-releasing Acylamino-acid-releasing enzyme 1 (AARE1) (EC 3.4.19.1),Acylamino-acid-releasing enzyme 2 (AARE2) (EC 3.4.19.1),Os10g0415800 protein (Fragment),Os10g0415600 protein (Fragment) Q0IXP9,Q338C0,A0A0N7KRS7,A0A0P0XU66 AARE1_ORYSJ,AARE2_ORYSJ,A0A0N7KRS7_ORYSJ,A0A0P0XU66_ORYSJ Os10g0415600 LOC_Os10g28020 OsJ_31520,Os10g0415800 LOC_Os10g28030,Os10g0415800 OSNPB_100415800,Os10g0415600 OSNPB_100415600 FUNCTION: Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. {ECO:0000250|UniProtKB:Q84LM4}. ENOG411DU8E RRP41L A2RVK7,A0A1P8B3Z7,A0A1P8B403 RP41L_ARATH,A0A1P8B3Z7_ARATH,A0A1P8B403_ARATH Exosome complex component RRP41-like (Protein SLOWER GROWTH) (Ribosomal RNA-processing protein 41-like),3'-5'-exoribonuclease family protein DISRUPTION PHENOTYPE: Extremely slow growth, especially during the early stage of development. {ECO:0000269|PubMed:23132787}. FUNCTION: Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. In vitro, is a processive phosphorolytic exonuclease and requires a single-stranded poly(A) tail on the substrate RNA for its activity (By similarity). Plays an important role in seed germination and early seedling growth by mediating specific cytoplasmic mRNA decay of transcripts coding for the abscisic acid (ABA) biosynthetic enzymes NCED5 and NCED6, and the ABA signaling transcription factors ABI3 and ABI4 (PubMed:23132787). {ECO:0000250|UniProtKB:Q9SP08, ECO:0000269|PubMed:23132787}. R-ATH-429958;R-ATH-450604;R-ATH-6791226; 27448,21171,22841 Exosome complex component RRP41-like (Protein SLOWER GROWTH) (Ribosomal RNA-processing protein 41-like),3'-5'-exoribonuclease family protein cytoplasm [GO:0005737]; cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; RNA binding [GO:0003723]; nuclear mRNA surveillance [GO:0071028]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; rRNA 3'-end processing [GO:0031125]; rRNA catabolic process [GO:0016075]; seed germination [GO:0009845]; seedling development [GO:0090351]; U4 snRNA 3'-end processing [GO:0034475] TISSUE SPECIFICITY: Highly expressed in imbibed seeds and young seedlings. {ECO:0000269|PubMed:23132787}. locus:2124024; AT4G27490 Exosome complex component Os08g0116800 protein (Putative ribonuclease PH) (cDNA clone:001-119-G01, full insert sequence),3' exoribonuclease family, domain 1 containing protein, expressed (Os03g0844450 protein) (Putative exoribonuclease) (cDNA, clone: J065066D11, full insert sequence) Q69UI6,Q75LC8 Q69UI6_ORYSJ,Q75LC8_ORYSJ Os08g0116800 Os08g0116800 OsJ_25825 OSNPB_080116800 P0470F10.13,OSJNBa0032G11.15 Os03g0844450 LOC_Os03g62720 OsJ_13338 OSNPB_030844450 ENOG411DU8D Q8VZM7,Q940Y9,A0A1P8BF77 POLL1_ARATH,POLL2_ARATH,A0A1P8BF77_ARATH Putative ion channel POLLUX-like 1,Putative ion channel POLLUX-like 2,Ion channel POLLUX-like protein, putative (DUF1012) 92138,92211,94821 Putative ion channel POLLUX-like 1,Putative ion channel POLLUX-like 2,Ion channel POLLUX-like protein, putative (DUF1012) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; cation transmembrane transporter activity [GO:0008324]; potassium ion transport [GO:0006813],integral component of membrane [GO:0016021]; cation transmembrane transporter activity [GO:0008324]; potassium ion transport [GO:0006813] locus:2151276;,locus:505006671; AT5G02940,AT5G43745 Ion channel Expressed protein (Os03g0163100 protein) Q10RD6 Q10RD6_ORYSJ LOC_Os03g06720 Os03g0163100 OsJ_09515 OSNPB_030163100 ENOG411DU8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0111200 protein (Fragment) A0A0P0WRF1 A0A0P0WRF1_ORYSJ Os06g0111200 OSNPB_060111200 ENOG411DU8F RH41 Q3EBD3 RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 (EC 3.6.4.13) 3.6.4.13 55218 DEAD-box ATP-dependent RNA helicase 41 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501] locus:2828586; AT3G02065 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 41 (EC 3.6.4.13),Os02g0201900 protein (Fragment) Q0E2Z7,A0A0P0VG54 RH41_ORYSJ,A0A0P0VG54_ORYSJ Os02g0201900 LOC_Os02g10770 P0419A09.31,Os02g0201900 OSNPB_020201900 ENOG411DU8A MCI2.1 Q9FII8 Q9FII8_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to ATP/GTP nucleotide-binding protein) 50072 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Similarity to ATP/GTP nucleotide-binding protein) hydrolase activity [GO:0016787] locus:2163183; AT5G61450 Inherit from COG: 2-Phosphoglycerate kinase Os07g0466200 protein (Putative ATP/GTP nucleotide-binding protein),Os07g0466200 protein,2-phosphoglycerate kinase, putative, expressed (Os03g0102400 protein) (cDNA clone:J033081J24, full insert sequence) Q7EYM6,Q0D6M2,Q10T36 Q7EYM6_ORYSJ,Q0D6M2_ORYSJ,Q10T36_ORYSJ P0404G11.125-1 Os07g0466200 OSNPB_070466200,Os07g0466200 Os07g0466200 OSNPB_070466200,Os03g0102400 LOC_Os03g01250 OsJ_09065 OSNPB_030102400 ENOG411DU8C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch-like protein NA NA NA NA NA NA NA ENOG411DU8B PBL13,RIPK F4JZW1,Q9ZUF4,A0A1P8BBL9 PBL13_ARATH,RIPK_ARATH,A0A1P8BBL9_ARATH Serine/threonine-protein kinase PBL13 (EC 2.7.11.1) (PBS1-like protein 13) (Ser/Thr protein kinase ACIK1b),Serine/threonine-protein kinase RIPK (EC 2.7.11.1) (ACIK1A/PBL14) (ACRE protein ortholog 264A) (AtACRE264a) (PBS1-like protein 14) (RPM1-induced protein kinase),Protein kinase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Mutant plants exhibit enhanced disease resistance after inoculation with virulent Pseudomonas syringae, elevated basal-level expression of the PR1 defense marker gene, enhanced reactive oxygen species (ROS) burst in response to perception of bacterial microbial patterns, and accelerated flagellin-induced activation of MAP kinases. {ECO:0000269|PubMed:26432875}.,DISRUPTION PHENOTYPE: Reduced leaf width. Enhanced disease resistance to the bacterial pathogen Pseudomonas syringae pv. tomato. {ECO:0000269|PubMed:21320696}. FUNCTION: Involved in defense responses. Acts as negative regulator of plant immune responses. {ECO:0000269|PubMed:26432875}.,FUNCTION: Serine/threonine-protein kinase involved in disease resistance. During Pseudomonas syringae infection, and in response to the bacterial effectors AvrB and AvrRpm1, RIPK phosphorylates the host target RIN4, which subsequently activates RPM1-depedent effector-triggered immunity (ETI) (PubMed:21320696, PubMed:25625821). Seems to act as negative regulator of plant basal defense responses and may play a role in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) (PubMed:21320696). Required for the bacterial XopAC/AvrAC effector-triggered immunity against Xanthomonas campestris (PubMed:23951354). {ECO:0000269|PubMed:21320696, ECO:0000269|PubMed:23951354, ECO:0000269|PubMed:25625821}. 2.7.11.1 56172,51701,57575 Serine/threonine-protein kinase PBL13 (EC 2.7.11.1) (PBS1-like protein 13) (Ser/Thr protein kinase ACIK1b),Serine/threonine-protein kinase RIPK (EC 2.7.11.1) (ACIK1A/PBL14) (ACRE protein ortholog 264A) (AtACRE264a) (PBS1-like protein 14) (RPM1-induced protein kinase),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; negative regulation of immune response [GO:0050777]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2157101;,locus:2064712; AT5G35580,AT2G05940 serine threonine-protein kinase At5g01020-like Os07g0613500 protein (Putative auxin-regulated dual specificity cytosolic kinase) (cDNA clone:J023086E05, full insert sequence),Os03g0179400 protein (Serine/threonine-protein kinase NAK, putative, expressed) (cDNA clone:002-121-C09, full insert sequence) Q8H3A6,Q10QY0 Q8H3A6_ORYSJ,Q10QY0_ORYSJ P0616D06.105 Os07g0613500 OSNPB_070613500,Os03g0179400 LOC_Os03g08170 Os03g0179400 OSNPB_030179400 ENOG411DU85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411DU84 T5P19_110 Q9LXZ4 Q9LXZ4_ARATH GroES-like zinc-binding alcohol dehydrogenase family protein (Putative quinone reductase) (Quinone reductase-like protein) ARA:GQT-1848-MONOMER; 37266 GroES-like zinc-binding alcohol dehydrogenase family protein (Putative quinone reductase) (Quinone reductase-like protein) peroxisome [GO:0005777]; oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270] locus:2102504; AT3G56460 Quinone oxidoreductase-like protein 2 homolog Os05g0313500 protein (Fragment) A0A0P0WKK9 A0A0P0WKK9_ORYSJ Os05g0313500 OSNPB_050313500 ENOG411DU87 SRK2A,SRK2B,SNRK2.4 P43291,Q9C958,F4I7B6 SRK2A_ARATH,SRK2B_ARATH,F4I7B6_ARATH Serine/threonine-protein kinase SRK2A (EC 2.7.11.1) (Arabidopsis protein SK1) (OST1-kinase-like 7) (SNF1-related kinase 2.4) (SnRK2.4),Serine/threonine-protein kinase SRK2B (EC 2.7.11.1) (OST1-kinase-like 6) (SNF1-related kinase 2.10) (SnRK2.10),Protein kinase superfamily protein 2.7.11.1; 2.7.11.1 41169,41040,42148 Serine/threonine-protein kinase SRK2A (EC 2.7.11.1) (Arabidopsis protein SK1) (OST1-kinase-like 7) (SNF1-related kinase 2.4) (SnRK2.4),Serine/threonine-protein kinase SRK2B (EC 2.7.11.1) (OST1-kinase-like 6) (SNF1-related kinase 2.10) (SnRK2.10),Protein kinase superfamily protein intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556],cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphatidic acid binding [GO:0070300]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; lateral root development [GO:0048527]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphatidic acid binding [GO:0070300]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; primary root development [GO:0080022]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:15292193}. locus:2206046;,locus:2197379; AT1G10940,AT1G60940 Serine threonine-protein kinase Serine/threonine-protein kinase SAPK7 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 7) (RK4 kinase) (stress-activated protein kinase 7) (OsSAPK7),Serine/threonine-protein kinase SAPK6 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 6) (stress-activated protein kinase 6) (OsSAPK6),Os04g0432000 protein (Fragment) Q7XQP4,Q6ZI44,A0A0P0WAB7 SAPK7_ORYSJ,SAPK6_ORYSJ,A0A0P0WAB7_ORYSJ SAPK7 RK4 Os04g0432000 LOC_Os04g35240 OsJ_14855 OSJNBa0084A10.12,SAPK6 RK1 Os02g0551100 LOC_Os02g34600 OJ1004_H01.2 OsJ_07099 P0451A10.35,Os04g0432000 OSNPB_040432000 FUNCTION: May play a role in signal transduction of hyperosmotic response.,FUNCTION: May play a role in signal transduction of hyperosmotic response (Probable). Can phosphorylate ABI5 in vitro (PubMed:21055780). Can phosphorylate BZIP46 in vitro (PubMed:22301130). {ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22301130, ECO:0000305}. ENOG411DU86 Q9FLU4,F4KH70 Q9FLU4_ARATH,F4KH70_ARATH At5g24600,Uncharacterized protein 27838,27476 At5g24600,Uncharacterized protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2153909; AT5G24600 Protein of unknown function DUF599 Os02g0292800 protein (cDNA clone:002-119-D05, full insert sequence),Os08g0153900 protein (cDNA, clone: J065196P16, full insert sequence) Q6K858,Q84ZM3 Q6K858_ORYSJ,Q84ZM3_ORYSJ Os02g0292800 OJ1057_D08.13 OJ1124_E11.34 OSNPB_020292800,OJ1066_B03.114 OJ1349_D05.135 Os08g0153900 OSNPB_080153900 ENOG411DU81 CYP711A1 B9DFU2 MAX1_ARATH Cytochrome P450 711A1 (EC 1.14.-.-) (Protein MORE AXILLARY BRANCHES 1) DISRUPTION PHENOTYPE: Increased shoot branching. {ECO:0000269|PubMed:15737939, ECO:0000269|PubMed:16387852, ECO:0000269|PubMed:20667910, ECO:0000269|PubMed:21119045, ECO:0000269|PubMed:23204501}. Mutant plants displayed increased number of axillary branches rounder rosette leaves smaller rosette diameter and reduced stature; this phenotype is similar to those of the other recessive axillary bud outgrowth max mutants of Arabidopsis. Semi-dwarf; Increased branching; Rounded rosette leaves-H. Goodman-2006 FUNCTION: Converts carlactone to carlactonoic acid by catalyzing consecutive oxidations at C-19 to convert the C-19 methyl group into carboxylic acid (PubMed:25425668). Prefers 11R-carlactone to 11S-carlactone as substrate (PubMed:25425668). Acts downstream of CCD7/MAX3 and CCD8/MAX4 in strigolactone signaling pathway and may be implicated in synthesis of carotenoid-derived branch regulators. Acts as a positive regulator of the flavonoid pathway in the late vegetative stage plant. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds (PubMed:15737939, PubMed:16387852). {ECO:0000269|PubMed:15737939, ECO:0000269|PubMed:16387852, ECO:0000269|PubMed:25425668}. MISCELLANEOUS: The branching phenotypes of the max1, ccd7/max3 and ccd8/max4 mutants can be rescued by exogenous treatment with the synthetic strigolactone analogs GR24 and 4BD. {ECO:0000305|PubMed:23204501}. R-ATH-211958;R-ATH-211979;R-ATH-211981;R-ATH-2162123;R-ATH-5423646; 1.14.-.- 59425 Cytochrome P450 711A1 (EC 1.14.-.-) (Protein MORE AXILLARY BRANCHES 1) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; auxin polar transport [GO:0009926]; carotenoid biosynthetic process [GO:0016117]; positive regulation of flavonoid biosynthetic process [GO:0009963]; regulation of meristem structural organization [GO:0009934]; secondary shoot formation [GO:0010223] TISSUE SPECIFICITY: Expressed in the vascular cylinder (including the pericycle) in roots, the cambial region of vascular bundles in inflorescence stems and the vascular junctions of axillary regions in leaves and flowers. {ECO:0000269|PubMed:15737939}. locus:2057361; AT2G26170 cytochrome P450 Cytochrome p450 family CYP711A member (Os06g0565100 protein) (Putative thromboxane-A synthase),Cytochrome p450 family CYP711A member (Os01g0701500 protein),Os01g0701400 protein Q5Z6A5,A2ZWY7,A0A0P0V748 Q5Z6A5_ORYSJ,A2ZWY7_ORYSJ,A0A0P0V748_ORYSJ Os06g0565100 OSNPB_060565100 P0513E02.10,Os01g0701500 Os01g0701500 OsJ_03155 OSNPB_010701500,Os01g0701400 OSNPB_010701400 ENOG411DU80 LFNR2,LFNR1,FNR1 Q8W493,Q9FKW6,F4JZ46 FNRL2_ARATH,FNRL1_ARATH,F4JZ46_ARATH Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic (EC 1.18.1.2) (Leaf FNR 2) (AtLFNR2) (FNR-2),Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic (EC 1.18.1.2) (Leaf FNR 1) (AtLFNR1) (FNR-1),Ferredoxin--NADP reductase (EC 1.18.1.2) DISRUPTION PHENOTYPE: Plants have a reduced capacity for carbon fixation and prevent the association of LFNR2 with the thylakoid membrane. {ECO:0000269|PubMed:17335513}. reduced rosette size and pale green leaves remarkably low chlorophyll content per leaf area,Reduced photosynthetic properties including low chlorophyll content reduced accumulation of thylakoid proteins and reduced rates of carbon fixaiton. Low fresh weight and pale green under short days-P. Mulo-2009,Reduced rosette size; Pale green leaves-P. Mulo -2007 FUNCTION: Plays a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. {ECO:0000269|PubMed:17335513, ECO:0000269|Ref.5}.,FUNCTION: Plays a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. {ECO:0000269|PubMed:17335513, ECO:0000269|Ref.7}. PATHWAY: Energy metabolism; photosynthesis. ARA:AT1G20020-MONOMER;,ARA:AT5G66190-MONOMER; 1.18.1.2; 1.18.1.2 41168,40326,29684 Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic (EC 1.18.1.2) (Leaf FNR 2) (AtLFNR2) (FNR-2),Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic (EC 1.18.1.2) (Leaf FNR 1) (AtLFNR1) (FNR-1),Ferredoxin--NADP reductase (EC 1.18.1.2) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; ferredoxin-NADP+ reductase activity [GO:0004324]; poly(U) RNA binding [GO:0008266]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; photosynthesis [GO:0015979]; response to cytokinin [GO:0009735],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity [GO:0045157]; ferredoxin-NADP+ reductase activity [GO:0004324]; poly(U) RNA binding [GO:0008266]; protein domain specific binding [GO:0019904]; defense response to bacterium [GO:0042742]; photosynthetic electron transport chain [GO:0009767],ferredoxin-NADP+ reductase activity [GO:0004324] TISSUE SPECIFICITY: Expressed in shoots. Restricted to green tissues, being more abundant in stems. {ECO:0000269|Ref.5}.,TISSUE SPECIFICITY: Expressed in shoots. Restricted to green tissues, being more abundant in siliques. {ECO:0000269|Ref.7}. locus:2198651;,locus:2156917; AT1G20020,AT5G66190 Ferredoxin--nadp reductase leaf isozyme Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic (EC 1.18.1.2) (Leaf FNR 2) (FNR-2) (Os-LFNR2),Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic (FNR) (EC 1.18.1.2) (Leaf FNR 1) (FNR-1) (Os-LFNR1),Ferredoxin--NADP reductase, chloroplastic (FNR) (EC 1.18.1.2) Q6ZFJ3,P41344,Q6ZFJ4 FENR2_ORYSJ,FENR1_ORYSJ,Q6ZFJ4_ORYSJ LFNR2 LOC_Os02g01340 Os02g0103800 OJ1435_F07.32-2 OsJ_05011 OSNPB_020103800,LFNR1 Os06g0107700 LOC_Os06g01850 OsJ_19844 P0514G12.8 P0644B06.52,OJ1435_F07.32-1 Os02g0103800 OSNPB_020103800 FUNCTION: Plays a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. {ECO:0000250|UniProtKB:Q9FKW6}.,FUNCTION: May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. {ECO:0000250|UniProtKB:Q9FKW6}. ENOG411DU83 POLD3 Q9SYL7 Q9SYL7_ARATH DNA-directed DNA polymerase (T30F21.2 protein) R-ATH-110314;R-ATH-174411;R-ATH-174414;R-ATH-174417;R-ATH-174437;R-ATH-5651801;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091;R-ATH-69166;R-ATH-69183; 55542 DNA-directed DNA polymerase (T30F21.2 protein) nucleus [GO:0005634]; DNA-directed DNA polymerase activity [GO:0003887]; DNA strand elongation involved in DNA replication [GO:0006271] locus:2202985; AT1G78650 DNA polymerase subunit Cdc27 DNA polymerase delta p66 subunit-like (Os01g0204000 protein) (cDNA clone:J033030D20, full insert sequence) (cDNA clone:J033050J10, full insert sequence),Os01g0204000 protein (Fragment) Q5QNL2,A0A0P0UZW5 Q5QNL2_ORYSJ,A0A0P0UZW5_ORYSJ P0451C06.10-1 Os01g0204000 OsJ_00794 OSNPB_010204000,Os01g0204000 OSNPB_010204000 ENOG411E35V CSD1 P24704 SODC1_ARATH Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1) (Copper/zinc superoxide dismutase 1) FUNCTION: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. ARA:AT1G08830-MONOMER;MetaCyc:AT1G08830-MONOMER; Prion diseases (05020),Peroxisome (04146),Amyotrophic lateral sclerosis (ALS) (05014),Huntington's disease (05016) 1.15.1.1 15098 Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1) (Copper/zinc superoxide dismutase 1) cytosol [GO:0005829]; extracellular space [GO:0005615]; nucleus [GO:0005634]; copper ion binding [GO:0005507]; superoxide dismutase activity [GO:0004784]; zinc ion binding [GO:0008270]; cellular response to copper ion [GO:0071280]; cellular response to light intensity [GO:0071484]; cellular response to oxidative stress [GO:0034599]; cellular response to ozone [GO:0071457]; cellular response to salt stress [GO:0071472]; cellular response to sucrose stimulus [GO:0071329]; cellular response to UV-B [GO:0071493]; defense response to bacterium [GO:0042742]; gene silencing by miRNA [GO:0035195]; response to copper ion [GO:0046688]; response to iron ion [GO:0010039]; response to oxidative stress [GO:0006979]; response to ozone [GO:0010193]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in leaves and pollen (at protein level). The spatial localization is regulated by miR398-mediated silencing. Mostly present in flowers, old rosette leaves and inflorescence, and, to a lower extent, in cauline leaves, stems and roots. {ECO:0000269|PubMed:16247729, ECO:0000269|PubMed:16861386, ECO:0000269|PubMed:9765550}. locus:2025595; AT1G08830 Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) Superoxide dismutase [Cu-Zn] 2 (EC 1.15.1.1),Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1),Os07g0665300 protein P28757,Q0DRV6,A0A0P0X9W4 SODC2_ORYSJ,SODC1_ORYSJ,A0A0P0X9W4_ORYSJ SODCC2 SODCC.2 Os07g0665200 LOC_Os07g46990 OJ1343_D04.132 P0450A04.103,SODCC1 SODCC.1 Os03g0351500 LOC_Os03g22810 OsJ_010399,Os07g0665300 OSNPB_070665300 FUNCTION: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. ENOG411E35Y GLTP3,GLTP2 Q9LU33,Q6NLQ3,A0A1P8APJ1,A0A1P8APC1 GLTP3_ARATH,GLTP2_ARATH,A0A1P8APJ1_ARATH,A0A1P8APC1_ARATH Glycolipid transfer protein 3,Glycolipid transfer protein 2 FUNCTION: May be involved in glycolipids transfer. {ECO:0000305|PubMed:16309699}.,FUNCTION: Transfers glycolipids in vitro. {ECO:0000305|PubMed:16309699}. R-ATH-1660662; 26517,25705,22580,18567 Glycolipid transfer protein 3,Glycolipid transfer protein 2 cytoplasm [GO:0005737]; intermembrane lipid transfer activity [GO:0120013],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; intermembrane lipid transfer activity [GO:0120013] locus:2094736;,locus:2027042; AT3G21260,AT1G21360 pleckstrin homology domain-containing family A member 8-like Os04g0438600 protein (cDNA clone:J013031N02, full insert sequence) Q0JD08 Q0JD08_ORYSJ Os04g0438600 Os04g0438600 OSNPB_040438600 ENOG411EA22 O04035 AT74H_ARATH Phosphoglycerate mutase-like protein AT74H (Protein At-74 homolog) (At-74H) FUNCTION: May play a role in carbohydrates metabolism. {ECO:0000250|UniProtKB:Q9MAA2}. 32679 Phosphoglycerate mutase-like protein AT74H (Protein At-74 homolog) (At-74H) cytosol [GO:0005829]; phosphatase activity [GO:0016791] locus:2036069; AT1G08940 Phosphoglycerate bisphosphoglycerate mutase family protein NA NA NA NA NA NA NA ENOG411E35F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alginate lyase Os12g0165400 protein A0A0P0Y7I0 A0A0P0Y7I0_ORYSJ Os12g0165400 OSNPB_120165400 ENOG411EA23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411E35C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os02g0686100 protein (Putative ring finger protein) Q6ZHC6 Q6ZHC6_ORYSJ Os02g0686100 Os02g0686100 OJ1717_A09.30 OSNPB_020686100 ENOG411E35N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411E35M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0141200 protein,OJ1005_B10.13 protein (Os01g0522950 protein),Os01g0522800 protein,Os01g0522400 protein,Os01g0524100 protein,Os05g0141000 protein B9FMD4,Q7EZN9,A0A0P0V3Q5,A0A0P0V3F3,A0A0P0V3G5,A0A0P0WHQ7 B9FMD4_ORYSJ,Q7EZN9_ORYSJ,A0A0P0V3Q5_ORYSJ,A0A0P0V3F3_ORYSJ,A0A0P0V3G5_ORYSJ,A0A0P0WHQ7_ORYSJ Os05g0141200 OsJ_17066 OSNPB_050141200,OJ1005_B10.13 Os01g0522950 OSNPB_010522950,Os01g0522800 OSNPB_010522800,Os01g0522400 OSNPB_010522400,Os01g0524100 OSNPB_010524100,Os05g0141000 OSNPB_050141000 ENOG411E35K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os04g0577700 protein (cDNA clone:002-150-A01, full insert sequence) Q0JAU0 Q0JAU0_ORYSJ Os04g0577700 Os04g0577700 OsJ_15873 OSNPB_040577700 ENOG411E35J T2O9.180 Q9M1C3 Q9M1C3_ARATH Uncharacterized protein At3g60200 (Uncharacterized protein T2O9.180) 33562 Uncharacterized protein At3g60200 (Uncharacterized protein T2O9.180) locus:2101487; AT3G60200 transposon protein OSJNBb0016D16.16 protein (Os04g0588000 protein),Os02g0689500 protein (cDNA clone:J023143J01, full insert sequence) Q7XN17,Q6ZGY7 Q7XN17_ORYSJ,Q6ZGY7_ORYSJ Os04g0588000 OSJNBb0016D16.16 OSNPB_040588000,Os02g0689500 OJ1743_B12.24 OSNPB_020689500 ENOG411E35H Q1PDW1 Q1PDW1_ARATH At5g16920 (Fasciclin-like arabinogalactan family protein) 28103 At5g16920 (Fasciclin-like arabinogalactan family protein) locus:2148191; AT5G16920 FAS1 Expressed protein (Os12g0233900 protein) Q2QVD8 Q2QVD8_ORYSJ Os12g0233900 LOC_Os12g13160 Os12g0233900 OsJ_35658 OSNPB_120233900 ENOG411E356 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF662 Os02g0528100 protein (cDNA clone:001-122-B11, full insert sequence),Os02g0528100 protein (cDNA clone:J033118E13, full insert sequence) Q6H6P9,B7EU28 Q6H6P9_ORYSJ,B7EU28_ORYSJ P0475F05.14-1 P0458B05.34-1 Os02g0528100 OsJ_06981 OSNPB_020528100,Os02g0528100 OSNPB_020528100 ENOG411E355 Q9SIC8 Q9SIC8_ARATH Coiled-coil protein (Expressed protein) (Uncharacterized protein At2g31410) 22698 Coiled-coil protein (Expressed protein) (Uncharacterized protein At2g31410) locus:2061300; AT2G31410 NA Os02g0595400 protein (cDNA clone:001-018-D10, full insert sequence) (cDNA clone:J023039O17, full insert sequence) (cDNA clone:J023093F23, full insert sequence) Q6ZI56 Q6ZI56_ORYSJ Os02g0595400 Os02g0595400 OJ1126_D09.27 OSNPB_020595400 ENOG411EK5M Q8H0T9,F4KB17 KTNB1_ARATH,F4KB17_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog FUNCTION: May participate in a complex which severs microtubules in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays (By similarity). {ECO:0000250}.,FUNCTION: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. {ECO:0000256|HAMAP-Rule:MF_03022}. 91434,91607 Katanin p80 WD40 repeat-containing subunit B1 homolog Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; katanin complex [GO:0008352]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; microtubule severing [GO:0051013] locus:2154438;,locus:2150788; AT5G23430,AT5G08390 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EK5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EK5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os07g0626400 protein Q7XIG4 Q7XIG4_ORYSJ OJ1339_F05.122 Os07g0626400 OSNPB_070626400 ENOG411EA2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EK5A ANTR6,PHT4:5 Q3E9A0,A0A1P8BAK7 ANTR6_ARATH,A0A1P8BAK7_ARATH Probable anion transporter 6, chloroplastic (Phosphate transporter PHT4;5),Phosphate transporter 45 FUNCTION: Inorganic phosphate and probable anion transporter. {ECO:0000269|PubMed:18086223}. 56683,62531 Probable anion transporter 6, chloroplastic (Phosphate transporter PHT4;5),Phosphate transporter 45 chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; inorganic phosphate transmembrane transporter activity [GO:0005315]; anion transmembrane transport [GO:0098656],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in leaf veins and sepals. {ECO:0000269|PubMed:18086223, ECO:0000269|PubMed:19513231}. locus:2149199; AT5G20380 Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EK5W FKBP16-1 Q944B0,A0A1P8B637,A0A1P8B636 FK161_ARATH,A0A1P8B637_ARATH,A0A1P8B636_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (PPIase FKBP16-1) (EC 5.2.1.8) (FK506-binding protein 16-1) (AtFKBP16-1) (Immunophilin FKBP16-1) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 22693,17859,19533 Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (PPIase FKBP16-1) (EC 5.2.1.8) (FK506-binding protein 16-1) (AtFKBP16-1) (Immunophilin FKBP16-1) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755],peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:505006521; AT4G26555 FKBP-type peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411EK5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RRM NA NA NA NA NA NA NA ENOG411EK5T Q8W481 Q8W481_ARATH ATPase, F1 complex, OSCP/delta subunit protein 20786 ATPase, F1 complex, OSCP/delta subunit protein proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986] locus:505006421; AT4G00895 NA NA NA NA NA NA NA NA ENOG411EK53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EHCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0316800 protein (Putative glycine rich protein) (cDNA clone:001-102-A04, full insert sequence),Os06g0317200 protein (Putative glycine rich protein),Os06g0317200 protein (Putative glycine rich protein) (cDNA clone:001-103-C11, full insert sequence),Os06g0316300 protein (Putative glycine rich protein),Os06g0317100 protein Q5Z4Q3,Q5Z4P7,Q5Z4P9,Q5Z4P8,Q5Z4Q6,A0A0P0WW10 Q5Z4Q3_ORYSJ,Q5Z4P7_ORYSJ,Q5Z4P9_ORYSJ,Q5Z4P8_ORYSJ,Q5Z4Q6_ORYSJ,A0A0P0WW10_ORYSJ Os06g0316800 B1156C07.39 OsJ_21135 OSNPB_060316800 P0468A12.9,B1156C07.45-1 P0468A12.15-1 Os06g0317200 OSNPB_060317200,B1156C07.45-3 Os06g0317200 P0468A12.15-3 OsJ_21138 OSNPB_060317200,B1156C07.45-2 Os06g0317200 P0468A12.15-2 OSNPB_060317200,Os06g0316300 B1156C07.30 OsJ_21134 OSNPB_060316300,Os06g0317100 OSNPB_060317100 ENOG411EHCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Exocyst complex component Os02g0749500 protein A0A0P0VQ25 A0A0P0VQ25_ORYSJ Os02g0749500 OSNPB_020749500 ENOG411EHCX Q9FX77 Y1664_ARATH B3 domain-containing protein At1g16640 MISCELLANEOUS: Putative DNA-binding elements conserved in B3 domains from the RAV, ARF and ABI3/VP1 subfamilies are largely absent in At1g16640, suggesting that B3 domains could function in contexts other than transcriptional regulation. 15792 B3 domain-containing protein At1g16640 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2017953; AT1G16640 Transcriptional factor B3 family protein NA NA NA NA NA NA NA ENOG411EHCC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0147100 protein (cDNA clone:002-157-C09, full insert sequence) (cDNA clone:J013124C19, full insert sequence) Q5VP43 Q5VP43_ORYSJ Os06g0147100 OsJ_14982 OSNPB_060147100 P0036F10.27 ENOG411EHCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0303100 protein A0A0P0VI12 A0A0P0VI12_ORYSJ Os02g0303100 OSNPB_020303100 ENOG411EHCH CEP13 Q9FZ54 PCP13_ARATH Precursor of CEP13 (PCEP13) [Cleaved into: C-terminally encoded peptide 13 (CEP13)] FUNCTION: Extracellular signaling peptide that may regulate primary root growth rate and systemic nitrogen (N)-demand signaling. {ECO:0000250|UniProtKB:Q8L8Y3}. 9994 Precursor of CEP13 (PCEP13) [Cleaved into: C-terminally encoded peptide 13 (CEP13)] apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; multicellular organism development [GO:0007275]; nitrate import [GO:1902025]; regulation of root development [GO:2000280]; response to ammonium ion [GO:0060359]; response to gibberellin [GO:0009739]; response to nitrate starvation [GO:0090548]; response to nitrogen compound [GO:1901698]; response to osmotic stress [GO:0006970] locus:2035515; AT1G16950 NA NA NA NA NA NA NA NA ENOG411DRHE PCMP-E7 O65543 PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070, mitochondrial 69841 Pentatricopeptide repeat-containing protein At4g31070, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mRNA modification [GO:0016556] AT4G31070 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DRHN SD17,SD18,SD16,PSEUDOSRKA,RK1,MEC18.8,RK3,RK2 Q39086,O81905,Q9S972,O81832,P0DH87,A0A1P8AQZ9,Q9LHM1,Q9SJA3,A0A1P8B6Y2,A0A1P8B600,A0A1P8AVI8 SD17_ARATH,SD18_ARATH,SD16_ARATH,Y4729_ARATH,PSRK_ARATH,A0A1P8AQZ9_ARATH,Q9LHM1_ARATH,Q9SJA3_ARATH,A0A1P8B6Y2_ARATH,A0A1P8B600_ARATH,A0A1P8AVI8_ARATH Receptor-like serine/threonine-protein kinase SD1-7 (EC 2.7.11.1) (Arabidopsis thaliana receptor kinase 1) (S-domain-1 (SD1) receptor kinase 7) (SD1-7),Receptor-like serine/threonine-protein kinase SD1-8 (EC 2.7.11.1) (Arabidopsis thaliana receptor kinase 3) (S-domain-1 (SD1) receptor kinase 8) (SD1-8),Receptor-like serine/threonine-protein kinase SD1-6 (EC 2.7.11.1) (Arabidopsis thaliana receptor kinase 2) (S-domain-1 (SD1) receptor kinase 6) (SD1-6),G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (EC 2.7.11.1),Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK (Pseudogene of S-locus receptor kinase A),Receptor kinase 1,S glycoprotein (S-locus related protein SLR1 homolog (AtS1); 62512-63831) (S-locus related protein SLR1, putative (S1)),S-locus glycoprotein family protein (Similar to S-locus glycoproteins),S-locus lectin protein kinase family protein,Receptor kinase 3,Receptor kinase 2 DISRUPTION PHENOTYPE: Reduced abscisic acid (ABA) sensitivity during seed germination. {ECO:0000269|PubMed:18552232}. FUNCTION: Involved in the regulation of cellular expansion and differentiation. Mediates subcellular relocalization of PUB9 from nucleus to plasma membrane in a protein-phosphorylation-dependent manner. May be involved in the abscisic acid-mediated signaling pathway, at least during germination. {ECO:0000269|PubMed:18552232, ECO:0000269|PubMed:8811866}.,FUNCTION: Involved in the regulation of cellular expansion and differentiation. {ECO:0000250}.,FUNCTION: Truncated and inactivated form of SRK, the female specificity determinant of self-incompatibility when active. Most A.thaliana cultivars contain such an inactive form and thus, are self-fertiles. {ECO:0000269|PubMed:15505209, ECO:0000269|PubMed:17237349, ECO:0000269|PubMed:17656687}. 2.7.11.1 95946,96466,95980,88923,62093,69010,50223,18209,94238,69324,69055 Receptor-like serine/threonine-protein kinase SD1-7 (EC 2.7.11.1) (Arabidopsis thaliana receptor kinase 1) (S-domain-1 (SD1) receptor kinase 7) (SD1-7),Receptor-like serine/threonine-protein kinase SD1-8 (EC 2.7.11.1) (Arabidopsis thaliana receptor kinase 3) (S-domain-1 (SD1) receptor kinase 8) (SD1-8),Receptor-like serine/threonine-protein kinase SD1-6 (EC 2.7.11.1) (Arabidopsis thaliana receptor kinase 2) (S-domain-1 (SD1) receptor kinase 6) (SD1-6),G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (EC 2.7.11.1),Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK (Pseudogene of S-locus receptor kinase A),Receptor kinase 1,S glycoprotein (S-locus related protein SLR1 homolog (AtS1); 62512-63831) (S-locus related protein SLR1, putative (S1)),S-locus glycoprotein family protein (Similar to S-locus glycoproteins),S-locus lectin protein kinase family protein,Receptor kinase 3,Receptor kinase 2 integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin protein ligase binding [GO:0031625]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to abscisic acid stimulus [GO:0071215]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; ubiquitin protein ligase binding [GO:0031625]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],cytosol [GO:0005829]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; ubiquitin protein ligase binding [GO:0031625]; cellular protein localization [GO:0034613]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium, incompatible interaction [GO:0009816]; protein autophosphorylation [GO:0046777]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; recognition of pollen [GO:0048544],plasma membrane [GO:0005886]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] TISSUE SPECIFICITY: Mostly expressed in leaves, and, to a lower extent, in stems and flower buds. {ECO:0000269|PubMed:16668863}.,TISSUE SPECIFICITY: Expressed in the root-hypocotyl transition zone, at the base of lateral roots, axillary buds and pedicels. {ECO:0000269|PubMed:7866027}.,TISSUE SPECIFICITY: Expressed in cotyledons, leaves and sepals. {ECO:0000269|PubMed:7866027}. locus:2018546;,locus:2141181;,locus:2018506;,locus:2131684;,locus:2088619;,locus:2046698; AT1G65790,AT4G21380,AT1G65800,AT4G27290,AT4G21370,AT3G12000,AT2G24620 Serine threonine-protein kinase Os05g0501400 protein (Putative receptor-like protein kinase),Os01g0784700 protein,D-mannose binding lectin family protein, expressed (Os03g0556600 protein) (Putative receptor-like kinase),Os07g0550500 protein Q60EJ2,Q0JIQ1,Q7Y1P1,A0A0P0X7Q1 Q60EJ2_ORYSJ,Q0JIQ1_ORYSJ,Q7Y1P1_ORYSJ,A0A0P0X7Q1_ORYSJ Os05g0501400 Os05g0501400 OSJNBa0017K09.6 OSNPB_050501400,Os01g0784700 Os01g0784700 OSNPB_010784700,LOC_Os03g35600 Os03g0556600 OSJNBa0053G10.5 OSNPB_030556600,Os07g0550500 OSNPB_070550500 ENOG411DRHT MJB21.3 Q93Z91 Q93Z91_ARATH AT5g42660/MJB21_3 (DNA-directed RNA polymerase subunit beta) (DNA-directed RNA polymerase subunit beta (DUF616)) 53062 AT5g42660/MJB21_3 (DNA-directed RNA polymerase subunit beta) (DNA-directed RNA polymerase subunit beta (DUF616)) integral component of membrane [GO:0016021]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2165457; AT5G42660 Protein of unknown function (DUF616) Os01g0749100 protein (cDNA, clone: J075013A22, full insert sequence),Os03g0769050 protein Q94J18,A0A0P0W465 Q94J18_ORYSJ,A0A0P0W465_ORYSJ Os01g0749100 OSNPB_010749100 P0481E12.36,Os03g0769050 OSNPB_030769050 ENOG411DRHY MWD9.13 Q84TE7,F4K9U7 Q84TE7_ARATH,F4K9U7_ARATH At5g22340 (NF-kappa-B inhibitor-like protein) (Uncharacterized protein At5g22340),NF-kappa-B inhibitor-like protein 36266,38304 At5g22340 (NF-kappa-B inhibitor-like protein) (Uncharacterized protein At5g22340),NF-kappa-B inhibitor-like protein integral component of membrane [GO:0016021] locus:2176312; AT5G22340 NA Expressed protein (Os03g0322600 protein) (cDNA clone:J013099A05, full insert sequence) Q10M56 Q10M56_ORYSJ Os03g0322600 LOC_Os03g20640 Os03g0322600 OsJ_10664 OSNPB_030322600 ENOG411EDG2 NAC92 Q9FKA0 NAC92_ARATH NAC domain-containing protein 92 (ANAC092) (AtNAC2) (AtNAC6) (Protein ORESARA 1) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:16359384). Delayed leaf senescence and flowering (PubMed:9351240, PubMed:19229035, PubMed:20113437, PubMed:21303842). Increased tolerance to various types of oxidative stress including H(2)O(2), salicylhydroxamic acid (SHAM), N,N-diethyldithio carbamic acid (DDC) and methyl viologen (MV) (PubMed:15295076). Impaired age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Increased seed germination rate under saline conditions and delay of salinity-induced chlorophyll loss in leaves (PubMed:20113437). {ECO:0000269|PubMed:15295076, ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:19229035, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:21303842, ECO:0000269|PubMed:9351240}. Indistinguishable from wildtype under normal or salt stress growth conditions.,Not significantly affected in lateral root development. Susceptible to bacterial infection-R. Cameron-2009 FUNCTION: Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269|PubMed:15295076, ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:19229035, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:21303842, ECO:0000269|PubMed:23340744, ECO:0000269|PubMed:23459204, ECO:0000269|PubMed:9351240}. MISCELLANEOUS: 'Oresara' means long-living in Korean. {ECO:0000305|PubMed:9351240}. 32984 NAC domain-containing protein 92 (ANAC092) (AtNAC2) (AtNAC6) (Protein ORESARA 1) nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; lateral root development [GO:0048527]; leaf senescence [GO:0010150]; positive regulation of age-related resistance [GO:1904250]; positive regulation of leaf senescence [GO:1900057]; positive regulation of programmed cell death [GO:0043068]; positive regulation of sequence-specific DNA binding transcription factor activity [GO:0051091]; regulation of gene expression [GO:0010468]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to salt [GO:1902074]; response to salt stress [GO:0009651]; stress-induced premature senescence [GO:0090400]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates during leaf and flower aging (PubMed:20113437). Induced by EIN2 during leaf aging, but negatively regulated by miR164, which expression decreases gradually with aging through negative regulation by EIN2 (PubMed:19229035). In leaves, accumulates at the tips and margins and in leaves undergoing senescence. Present in floral organs of partly or fully opened flowers, but not in young flower buds. Expressed in pollen grains of mature anthers, but not in immature anthers. In petals of open flowers mostly observed in the tip region. In mature siliques, accumulates at the abscission zone, in the distal portion of the valve margins and the tip. In roots, detected in primary and lateral roots, but not in root tips. In seeds present in embryos and the micropylar endosperm (PubMed:20113437, PubMed:23340744). {ECO:0000269|PubMed:19229035, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:23340744}. TISSUE SPECIFICITY: Mostly expressed in roots and flowers, and, to a lower extent, in shoots and leaves. Particularly expressed in old and senescing tissues. {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:23340744}. locus:2164895; AT5G39610 atnac2 ore1 anac092 atnac6 atnac6 (arabidopsis nac domain containing protein 6) NA NA NA NA NA NA NA ENOG411EDGX AGL61 Q4PSU4 AGL61_ARATH Agamous-like MADS-box protein AGL61 (Protein DIANA) Reduced transmission through female gametophyte. 50% of ovules show defects in central cell development. Central cells are reduced in size and nuclei are displaced. Post-fertilization 50% of seeds abort early. In those aborted seeds the endosperm is morphologically abnormal. Female gametophyte defective; Rare embryo defective (inferred)-G. Drews-2008 FUNCTION: Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. MISCELLANEOUS: Plants lacking AGL61 show a reduced size of the central cell and a reduced or absent central cell vacuole. When fertilized, the central cell fails to give rise to endosperm and the embryo sac degenerates. However, mutated female gametophytesol are not defective in pollen tube guidance and the synergid function is not impaired.; MISCELLANEOUS: This protein was called 'DIANA' after the virginal Roman goddess of the hunt. 30264 Agamous-like MADS-box protein AGL61 (Protein DIANA) nucleus [GO:0005634]; polar nucleus [GO:0043078]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo sac central cell differentiation [GO:0009559]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}. TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. locus:2047304; AT2G24840 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EDGR Q3E9C8 Q3E9C8_ARATH Eukaryotic aspartyl protease family protein (Extracellular dermal glycoprotein-like protein/EDGP-like) 42807 Eukaryotic aspartyl protease family protein (Extracellular dermal glycoprotein-like protein/EDGP-like) cytosol [GO:0005829]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2179614; AT5G19100 Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EDGS NRPB5L1 Q9FJL8 RP5L1_ARATH DNA-directed RNA polymerase subunit 5-like protein 1 R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 24343 DNA-directed RNA polymerase subunit 5-like protein 1 DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383] locus:2174388; AT5G57980 rna polymerase ii fifth largest subunit c NA NA NA NA NA NA NA ENOG411EDGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDGQ CYP72A8 Q9LUD2 Q9LUD2_ARATH AT3g14620/MIE1_12 (Cytochrome P450) (Cytochrome P450, family 72, subfamily A, polypeptide 8) ARA:AT3G14620-MONOMER; 58643 AT3g14620/MIE1_12 (Cytochrome P450) (Cytochrome P450, family 72, subfamily A, polypeptide 8) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; circadian rhythm [GO:0007623] locus:2089531; AT3G14620 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EDGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EDGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:NC NA NA NA NA NA NA NA ENOG411EDGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class II (D K and N) Os02g0139600 protein (Fragment),Os02g0139600 protein A0A0P0VEI2,A0A0P0VEM7 A0A0P0VEI2_ORYSJ,A0A0P0VEM7_ORYSJ Os02g0139600 OSNPB_020139600 ENOG411EDGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like NA NA NA NA NA NA NA ENOG411EDGH ENDO3 Q8LDW6 ENDO3_ARATH Endonuclease 3 (AtENDO3) (EC 3.1.30.1) (Deoxyribonuclease ENDO3) (Single-stranded-nucleate endonuclease ENDO3) FUNCTION: Probable endonuclease (By similarity). Cannot hydrolyze single-stranded DNA and does not cleave mismatches. {ECO:0000250, ECO:0000269|PubMed:17651368}. 3.1.30.1 33424 Endonuclease 3 (AtENDO3) (EC 3.1.30.1) (Deoxyribonuclease ENDO3) (Single-stranded-nucleate endonuclease ENDO3) endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; DNA catabolic process [GO:0006308] locus:2119687; AT4G21590 S1/P1 Nuclease NA NA NA NA NA NA NA ENOG411EDGI DEGP4,DEGP3 Q9SHZ0,Q9SHZ1 DEGP4_ARATH,DEGP3_ARATH Protease Do-like 4, mitochondrial (EC 3.4.21.-),Putative protease Do-like 3, mitochondrial (EC 3.4.21.-) FUNCTION: Putative serine protease. 3.4.21.- 57970,61712 Protease Do-like 4, mitochondrial (EC 3.4.21.-),Putative protease Do-like 3, mitochondrial (EC 3.4.21.-) mitochondrial membrane [GO:0031966]; serine-type endopeptidase activity [GO:0004252],mitochondrial matrix [GO:0005759]; serine-type endopeptidase activity [GO:0004252] locus:2018481;,locus:2018476; AT1G65640,AT1G65630 Trypsin NA NA NA NA NA NA NA ENOG411EDGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411EDGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXWT Q681Q7 Y1390_ARATH Uncharacterized protein At1g03900 R-ATH-8856828; 29795 Uncharacterized protein At1g03900 extracellular region [GO:0005576]; membrane [GO:0016020]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; endocytosis [GO:0006897]; extracellular transport [GO:0006858] locus:2024208; AT1G03900 adaptin ear-binding coat-associated protein Adaptin ear-binding coat-associated protein 2, putative, expressed (Os10g0476000 protein) (cDNA clone:J013028C23, full insert sequence),Os10g0476000 protein (Fragment) Q9AUZ3,A0A0P0XVE7 Q9AUZ3_ORYSJ,A0A0P0XVE7_ORYSJ Os10g0476000 LOC_Os10g33630 Os10g0476000 OsJ_31878 OSJNBa0026O12.2 OSJNBb0044B19.3 OSNPB_100476000,Os10g0476000 OSNPB_100476000 ENOG411DXWQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 Zinc finger CCCH domain-containing protein 67 (OsC3H67),Os11g0209050 protein Q2QPW2,A0A0P0XZW9 C3H67_ORYSJ,A0A0P0XZW9_ORYSJ Os12g0515500 LOC_Os12g33090,Os11g0209050 OSNPB_110209050 ENOG411DXWP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein Os01g0937400 protein (Putative blight resistance protein) (cDNA clone:J023030I06, full insert sequence),Os01g0937400 protein,Os01g0937300 protein (Fragment) Q5JMK0,B9EW37,Q0JG80,A0A0P0VCT2 Q5JMK0_ORYSJ,B9EW37_ORYSJ,Q0JG80_ORYSJ,A0A0P0VCT2_ORYSJ Os01g0937400 OsJ_04700 OSNPB_010937400 P0504E02.15,Os01g0937400 OsJ_04699 OSNPB_010937400,Os01g0937300 Os01g0937300 OSNPB_010937300,Os01g0937300 OSNPB_010937300 ENOG411DXWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Folate receptor family Os07g0193000 protein A0A0P0X432 A0A0P0X432_ORYSJ Os07g0193000 OSNPB_070193000 ENOG411DVAI VEP1 Q9STX2 VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase (EC 1.3.1.3) (Delta(4)-3-oxosteroid 5-beta-reductase) (Delta-4,5-steroid 5-beta-reductase) (At5beta-StR) (Progesterone 5-beta-reductase) (5beta-POR) (Protein VEIN PATTERNING 1) FUNCTION: Involved in vascular strand development. Catalyzes the stereospecific conversion of progesterone to 5-beta-pregnane-3,20-dione. Can use progesterone, testosterone, 21-acetyl cortexone, 2-cyclohexenone, but-1-en-3-one, ethyl acrylate, ethylmethacrylate, cortisone and canarigenone as substrates, lower activity with 3-methyl-2-cyclohexenone and 3,5,5-trimethyl-2-cyclohexenone as substrate, and no activity with canarigenin, canarigenin digitoxoside and pregnenolone. May be involved in the formation of 5-beta phytoecdysteroids. {ECO:0000269|PubMed:11917087, ECO:0000269|PubMed:19166903}. MetaCyc:AT4G24220-MONOMER; 1.3.1.3; 1.3.1.3 44230 3-oxo-Delta(4,5)-steroid 5-beta-reductase (EC 1.3.1.3) (Delta(4)-3-oxosteroid 5-beta-reductase) (Delta-4,5-steroid 5-beta-reductase) (At5beta-StR) (Progesterone 5-beta-reductase) (5beta-POR) (Protein VEIN PATTERNING 1) cytosol [GO:0005829]; delta4-3-oxosteroid 5beta-reductase activity [GO:0047787]; enone reductase activity [GO:0035671]; response to wounding [GO:0009611]; steroid metabolic process [GO:0008202]; xylem and phloem pattern formation [GO:0010051] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, seeds and siliques. Expressed in the vascular bundles. {ECO:0000269|PubMed:11917087, ECO:0000269|PubMed:19166903}. locus:2135932; AT4G24220 Inherit from euNOG: NAD dependent epimerase dehydratase family protein Os07g0601600 protein (Putative progesterone 5-beta-reductase),Expressed protein (Os03g0436400 protein) (Os11g0351555 protein) (Progesterone 5-beta-reductase, putative) (Progesterone 5-beta-reductase, putative, expressed) (cDNA clone:001-207-C11, full insert sequence),Os03g0422600 protein Q8H4F1,Q60DC5,A0A0P0VZR0 Q8H4F1_ORYSJ,Q60DC5_ORYSJ,A0A0P0VZR0_ORYSJ OJ2013_G04.118 Os07g0601600 OSNPB_070601600,OSJNBb0034P05.1 Os11g0351555 LOC_Os03g32170 Os03g0436400 OsJ_11392 OSJNBb0013C14.21 OSNPB_030436400 OSNPB_110351555,Os03g0422600 OSNPB_030422600 ENOG411DVAH AIRP2,ABA Insensitive RING Protein 2,F13I12.210 B9DF79,Q93WE1,Q9M022,Q9SD57,Q8L8N5,A0A1P8BG05,F4JAD0,A0A1I9LTP6 B9DF79_ARATH,Q93WE1_ARATH,Q9M022_ARATH,Q9SD57_ARATH,Q8L8N5_ARATH,A0A1P8BG05_ARATH,F4JAD0_ARATH,A0A1I9LTP6_ARATH AT5G58787 protein (RING/U-box superfamily protein),RING/U-box superfamily protein (Uncharacterized protein At5g01520),RING finger family protein (RING/U-box superfamily protein) (Uncharacterized protein At5g01520) (Uncharacterized protein F7A7_40),At3g47160 (RING/U-box superfamily protein) (RNA binding-like protein) (RNA-binding protein-like protein),RING/U-box superfamily protein (RNA-binding protein-like protein) (Uncharacterized protein At5g58787) (Uncharacterized protein At5g58790/mzn1_240),RING/U-box superfamily protein FUNCTION: Possesses E3 ubiquitin-protein ligase activity in vitro when associated with the E2 enzyme UBC8 in vitro (PubMed:21969385, PubMed:28626006). Plays combinatory roles with AIRP1 in the positive regulation of the abscisic acid-mediated drought stress response (PubMed:21969385). Plays a positive role in abscisic acid- and high salinity-regulated seed germination through the ubiquitin-proteasome-dependent down-regulation of ATP1/SDIRIP1 (PubMed:28626006). {ECO:0000269|PubMed:21969385, ECO:0000269|PubMed:28626006}. MISCELLANEOUS: Plants over-expressing AIRP2 exhibit tolerance to severe drought stresss. {ECO:0000269|PubMed:21969385}. 26573,20060,28049,28524,28136,24561,29898,24425 AT5G58787 protein (RING/U-box superfamily protein),RING/U-box superfamily protein (Uncharacterized protein At5g01520),RING finger family protein (RING/U-box superfamily protein) (Uncharacterized protein At5g01520) (Uncharacterized protein F7A7_40),At3g47160 (RING/U-box superfamily protein) (RNA binding-like protein) (RNA-binding protein-like protein),RING/U-box superfamily protein (RNA-binding protein-like protein) (Uncharacterized protein At5g58787) (Uncharacterized protein At5g58790/mzn1_240),RING/U-box superfamily protein cytosol [GO:0005829],cytosol [GO:0005829]; ubiquitin protein ligase activity [GO:0061630]; cellular response to abscisic acid stimulus [GO:0071215]; positive regulation of response to water deprivation [GO:1902584] locus:2149750;,locus:505006703;,locus:2075601; AT5G58787,AT5G01520,AT3G47160 zinc finger Os04g0679800 protein,Os10g0500000 protein (Os10g0500300 protein) (RNA-binding protein, putative, expressed),Os07g0661600 protein (Zinc finger protein family-like) (cDNA clone:006-207-G05, full insert sequence) (cDNA clone:006-311-G08, full insert sequence) (cDNA clone:J013064M13, full insert sequence),Os07g0661600 protein,Os04g0679800 protein (Fragment) Q0J8Z1,Q8LNG7,Q7EYM0,A0A0P0X9Y8,A0A0P0WGC0 Q0J8Z1_ORYSJ,Q8LNG7_ORYSJ,Q7EYM0_ORYSJ,A0A0P0X9Y8_ORYSJ,A0A0P0WGC0_ORYSJ Os04g0679800 Os04g0679800 OSNPB_040679800,Os10g0500300 LOC_Os10g35670 Os10g0500000 OSJNBa0078O01.6 OSNPB_100500300,P0453E03.108-1 Os07g0661600 OSNPB_070661600,Os07g0661600 OSNPB_070661600,Os04g0679800 OSNPB_040679800 ENOG411DVAG IP5P5,BST1 Q66GQ6,B3H480 IP5P5_ARATH,B3H480_ARATH Type I inositol polyphosphate 5-phosphatase 5 (At5PTase5) (EC 3.1.3.-) (Protein BRISTLED 1) (Protein DEFORMED ROOT HAIRS 4),DNAse I-like superfamily protein DISRUPTION PHENOTYPE: Affected root hair morphogenesis. {ECO:0000269|PubMed:11041890, ECO:0000269|PubMed:15863435, ECO:0000269|PubMed:16367956}. Root hairs are very regular but significantly shorter than in the wild type.,Straight hairs with ballooned bases Short root hairs-N. Baumeberger-2005 FUNCTION: May be involved in the regulation of root hairs development. Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but is not required for normal subsequent tip growth. {ECO:0000269|PubMed:11041890, ECO:0000269|PubMed:16367956}. ARA:AT5G65090-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.- 59930,52649 Type I inositol polyphosphate 5-phosphatase 5 (At5PTase5) (EC 3.1.3.-) (Protein BRISTLED 1) (Protein DEFORMED ROOT HAIRS 4),DNAse I-like superfamily protein hydrolase activity [GO:0016787]; cell tip growth [GO:0009932]; phosphatidylinositol dephosphorylation [GO:0046856]; root epidermal cell differentiation [GO:0010053]; root hair cell differentiation [GO:0048765]; root hair initiation [GO:0048766],hydrolase activity [GO:0016787]; phosphatidylinositol dephosphorylation [GO:0046856] locus:2171805; AT5G65090 endonuclease exonuclease phosphatase family domain containing protein expressed Os02g0751900 protein (Putative inositol polyphosphate 5-phosphatase I) Q6Z8I9 Q6Z8I9_ORYSJ Os02g0751900 Os02g0751900 OSNPB_020751900 P0431B06.41 ENOG411E780 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosome inactivating protein NA NA NA NA NA NA NA ENOG411E781 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E782 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E784 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant (LEA) group 1 Os06g0110200 protein (cDNA clone:002-135-D09, full insert sequence) Q8H683 Q8H683_ORYSJ Os06g0110200 OsJ_19858 OSJNBa0004I20.22 OSNPB_060110200 P0514G12.46 ENOG411E785 EPFL3 C4B8C4 EPFL3_ARATH EPIDERMAL PATTERNING FACTOR-like protein 3 (EPF-like protein 3) [Cleaved into: MEPFL3] FUNCTION: Controls stomatal patterning. {ECO:0000250}. 12512 EPIDERMAL PATTERNING FACTOR-like protein 3 (EPF-like protein 3) [Cleaved into: MEPFL3] extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; stomatal complex development [GO:0010374] locus:6530298199; AT3G13898 NA NA NA NA NA NA NA NA ENOG411E786 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0357700 protein,Os04g0357400 protein,Os04g0357500 protein Q0JDX7,B9FEM6,A3ASR9 Q0JDX7_ORYSJ,B9FEM6_ORYSJ,A3ASR9_ORYSJ Os04g0357700 Os04g0357700 OsJ_14410 OSNPB_040357700,Os04g0357400 OsJ_14408 OSNPB_040357400,Os04g0357500 OsJ_14409 OSNPB_040357500 ENOG411E787 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mariner sub-class Os04g0328366 protein A0A0P0W8L4 A0A0P0W8L4_ORYSJ Os04g0328366 OSNPB_040328366 ENOG411E788 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0725200 protein) (cDNA clone:002-105-B05, full insert sequence) Q6AU08 Q6AU08_ORYSJ OSJNBb0122C16.3 LOC_Os03g51530 Os03g0725200 OSNPB_030725200 ENOG411E789 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVAW Q9ZVC3 Q9ZVC3_ARATH At2g41380 (Putative embryo-abundant protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) 30558 At2g41380 (Putative embryo-abundant protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259]; response to cadmium ion [GO:0046686] locus:2040277; AT2G41380 Methyltransferase domain Os01g0307686 protein A0A0P0V1G2 A0A0P0V1G2_ORYSJ Os01g0307686 OSNPB_010307686 ENOG411E78P SDH3-1,SDH3-2 P0DKI0,P0DKI1,A8MSF5 SDH31_ARATH,SDH32_ARATH,A8MSF5_ARATH Succinate dehydrogenase subunit 3-1, mitochondrial,Succinate dehydrogenase subunit 3-2, mitochondrial,Succinate dehydrogenase 3-1 FUNCTION: Membrane-anchoring subunit of succinate dehydrogenase (SDH). {ECO:0000250|UniProtKB:P69054}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle. {ECO:0000305}. 23454,20575 Succinate dehydrogenase subunit 3-1, mitochondrial,Succinate dehydrogenase subunit 3-2, mitochondrial,Succinate dehydrogenase 3-1 integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; respiratory chain complex II [GO:0045273]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; tricarboxylic acid cycle [GO:0006099],integral component of membrane [GO:0016021]; succinate dehydrogenase complex [GO:0045281]; succinate dehydrogenase activity [GO:0000104]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Expressed in flowers, inflorescences and stems. {ECO:0000269|PubMed:12374303}. AT5G09600,AT4G32210 succinate dehydrogenase NA NA NA NA NA NA NA ENOG411E78Q Q8LD64,F4JY62 Q8LD64_ARATH,F4JY62_ARATH At5g25570 (Polyamine-modulated factor 1-binding protein),Polyamine-modulated factor 1-binding protein 11222,14955 At5g25570 (Polyamine-modulated factor 1-binding protein),Polyamine-modulated factor 1-binding protein locus:2179484; AT5G25570 NA NA NA NA NA NA NA NA ENOG411E78T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein Os06g0683600 protein (Os06g0683700 protein) (cDNA clone:J033133F14, full insert sequence) Q655G5 Q655G5_ORYSJ Os06g0683700 Os06g0683600 OsJ_22401 OSNPB_060683700 P0009H10.12 ENOG411E78V RCI2B,RCI2A Q9ZNS6,Q9ZNQ7 RCI2B_ARATH,RCI2A_ARATH Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B),Hydrophobic protein RCI2A (Low temperature and salt-responsive protein LTI6A) 6082,5962 Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B),Hydrophobic protein RCI2A (Low temperature and salt-responsive protein LTI6A) integral component of membrane [GO:0016021]; response to cold [GO:0009409],integral component of membrane [GO:0016021]; hyperosmotic salinity response [GO:0042538]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409] locus:2074419;,locus:2074509; AT3G05890,AT3G05880 hydrophobic protein Hydrophobic protein LTI6B (Low temperature-induced protein 6B),Hydrophobic protein LTI6A (Low temperature-induced protein 6A),Hydrophobic protein LTI6B, putative, expressed (Os03g0370600 protein) (Putative low temperature and salt responsive protein) Q0DKW8,Q8H5T6,Q10KT8 LTI6B_ORYSJ,LTI6A_ORYSJ,Q10KT8_ORYSJ LTI6B DRR2 R1G1B Os05g0138300 LOC_Os05g04700 OSJNBa0069I13.6,LTI6A DRR1 Os07g0635900 LOC_Os07g44180 OJ1136_D11.102 OsJ_25274,Os03g0370600 LOC_Os03g25460 Os03g0370600 OsJ_11001 OSJNBa0013M12.23 OSNPB_030370600 FUNCTION: Plays a role in the regulation of membrane potential. Could mediate a proton leak (By similarity). {ECO:0000250}. ENOG411E78W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) Expressed protein (Os03g0831400 protein) (cDNA clone:J023085A04, full insert sequence) Q850Z7 Q850Z7_ORYSJ OSJNBb0027B08.8 LOC_Os03g61590 Os03g0831400 OsJ_13229 OSJNBa0078D06.20 OSNPB_030831400 ENOG411E78C Q84VW6 Q84VW6_ARATH At1g11655 (Uncharacterized protein At1g11655) 13042 At1g11655 (Uncharacterized protein At1g11655) locus:504956258; AT1G11655 NA NA NA NA NA NA NA NA ENOG411E78E Q9SVR9 Q9SVR9_ARATH Uncharacterized protein At4g21780 (Uncharacterized protein At4g21780/F17L22_240) (Uncharacterized protein F17L22.240) 13129 Uncharacterized protein At4g21780 (Uncharacterized protein At4g21780/F17L22_240) (Uncharacterized protein F17L22.240) locus:2119083; AT4G21780 NA NA NA NA NA NA NA NA ENOG411E78I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E78J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os08g0553600 protein (Os08g0553700 protein),Os08g0553500 protein,Os08g0553050 protein (Fragment) Q6Z3G1,Q6Z3G2,A0A0P0XI82 Q6Z3G1_ORYSJ,Q6Z3G2_ORYSJ,A0A0P0XI82_ORYSJ Os08g0553700 Os08g0553600 OJ1125_C01.11 OsJ_28228 OSJNBb0011H15.37 OSNPB_080553700,Os08g0553500 OJ1125_C01.9 OsJ_28227 OSJNBb0011H15.35 OSNPB_080553500,Os08g0553050 OSNPB_080553050 ENOG411E78M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os02g0687200 protein (cDNA clone:006-210-H10, full insert sequence) Q6ZHB5 Q6ZHB5_ORYSJ Os02g0687200 Os02g0687200 OJ1717_A09.44 OsJ_07972 OSNPB_020687200 ENOG411E78N F17A17.7,F14J8.16 Q9S7X5,Q9LPK4,Q9M151,Q681X9,A0A1P8AWJ6,A0A1I9LMC1 Q9S7X5_ARATH,Q9LPK4_ARATH,Q9M151_ARATH,Q681X9_ARATH,A0A1P8AWJ6_ARATH,A0A1I9LMC1_ARATH F17A17.7 protein (MLP3.18 protein),F14J8.16 protein,Uncharacterized protein AT4g01170,Uncharacterized protein At1g21560,Uncharacterized protein 55319,46318,51744,38135,41787,47293 F17A17.7 protein (MLP3.18 protein),F14J8.16 protein,Uncharacterized protein AT4g01170,Uncharacterized protein At1g21560,Uncharacterized protein locus:2077512;,locus:2027062;,locus:2125063; AT3G07730,AT1G21560,AT4G01170 NA NA NA NA NA NA NA NA ENOG411EC40 sks5,SKS6 Q9SGR6,F4I7X1 Q9SGR6_ARATH,F4I7X1_ARATH AT1G76160 protein (SKU5 similar 5) (T23E18.10),SKU5-similar 6 ARA:AT1G76160-MONOMER; 60041,60578 AT1G76160 protein (SKU5 similar 5) (T23E18.10),SKU5-similar 6 apoplast [GO:0048046]; cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722],apoplast [GO:0048046]; cell wall [GO:0005618]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722] locus:2199798;,locus:2033513; AT1G76160,AT1G41830 Multicopper oxidase NA NA NA NA NA NA NA ENOG411EF04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411DVA9 MPA22.8 Q9FGI3,Q9C8C9 Q9FGI3_ARATH,Q9C8C9_ARATH AT5g37540/mpa22_p_70 (Eukaryotic aspartyl protease family protein) (Similarity to nucleoid DNA-binding protein) (Uncharacterized protein At5g37540),Eukaryotic aspartyl protease family protein (Uncharacterized protein At1g66180) (Uncharacterized protein F15E12.7) 48648,47314 AT5g37540/mpa22_p_70 (Eukaryotic aspartyl protease family protein) (Similarity to nucleoid DNA-binding protein) (Uncharacterized protein At5g37540),Eukaryotic aspartyl protease family protein (Uncharacterized protein At1g66180) (Uncharacterized protein F15E12.7) integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190]; DNA binding [GO:0003677]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],Golgi apparatus [GO:0005794]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; response to L-ascorbic acid [GO:0033591]; response to light stimulus [GO:0009416] locus:2169886;,locus:2013865; AT5G37540,AT1G66180 aspartic proteinase NA NA NA NA NA NA NA ENOG411DVA8 IP5P9 Q9SIS4,A0A1P8AXD3,A0A1P8AXI3 IP5P9_ARATH,A0A1P8AXD3_ARATH,A0A1P8AXI3_ARATH Type IV inositol polyphosphate 5-phosphatase 9 (At5PTase9) (EC 3.1.3.36) (EC 3.1.3.86),DNAse I-like superfamily protein DISRUPTION PHENOTYPE: Increased salt sensitivity with reduced production of reactive oxygen species (ROS), reduced Ca(2+) influx, as well as decreased fluid-phase endocytosis. {ECO:0000269|PubMed:23658066}. FUNCTION: Has phosphatase activity toward PtdIns(4,5)P2 and at a lower extent toward PtdIns(3,4,5)P3 but not toward Ins(1,4,5)P3. Functions in salt stress response by regulating reactive oxygen species (ROS) production, endocytosis, Ca(2+) influx and stress-responsive genes expression. {ECO:0000269|PubMed:23658066}. ARA:AT2G01900-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.36; 3.1.3.86 47924,46850,48860 Type IV inositol polyphosphate 5-phosphatase 9 (At5PTase9) (EC 3.1.3.36) (EC 3.1.3.86),DNAse I-like superfamily protein phosphatidylinositol phosphate 5-phosphatase activity [GO:0034595]; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; cellular response to salt stress [GO:0071472]; phosphatidylinositol dephosphorylation [GO:0046856]; regulation of clathrin-dependent endocytosis [GO:2000369]; regulation of reactive oxygen species metabolic process [GO:2000377],hydrolase activity [GO:0016787]; phosphatidylinositol dephosphorylation [GO:0046856] TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:23658066}. locus:2059708; AT2G01900 type I inositol-145-trisphosphate 5-phosphatase Os03g0238300 protein (Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed) (cDNA clone:001-028-H05, full insert sequence) (cDNA clone:J033118P13, full insert sequence),Os03g0238300 protein (Fragment) Q10PD3,A0A0P0VVA6 Q10PD3_ORYSJ,A0A0P0VVA6_ORYSJ Os03g0238300 LOC_Os03g13520 Os03g0238300 OSNPB_030238300,Os03g0238300 OSNPB_030238300 ENOG411DVA4 NAC079,NAC100 Q9FLR3,Q9FLJ2,A0A1P8BFB4 NAC79_ARATH,NC100_ARATH,A0A1P8BFB4_ARATH NAC domain-containing protein 79 (ANAC79) (ANAC80) (AtNAC79) (AtNAC80),NAC domain-containing protein 100 (ANAC100) (AtNAC5),NAC domain containing protein 100 FUNCTION: Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. 37518,38472,31066 NAC domain-containing protein 79 (ANAC79) (ANAC80) (AtNAC79) (AtNAC80),NAC domain-containing protein 100 (ANAC100) (AtNAC5),NAC domain containing protein 100 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. locus:2160324;,locus:2163153; AT5G07680,AT5G61430 NAC domain-containing protein NAC domain protein (OSJNBa0072F16.10 protein) (Os04g0460600 protein) (cDNA clone:001-038-F10, full insert sequence) (cDNA clone:006-310-B03, full insert sequence),Os04g0460600 protein Q7XUV6,A0A0P0WBC5 Q7XUV6_ORYSJ,A0A0P0WBC5_ORYSJ TIL1 Os04g0460600 OsJ_15058 OSJNBa0072F16.10 OSNPB_040460600,Os04g0460600 OSNPB_040460600 ENOG411DVA0 Q8VZ37,A0A1I9LRX6 AP3S_ARATH,A0A1I9LRX6_ARATH AP-3 complex subunit sigma (AP-3 complex subunit sigma-3) (Adaptor-related protein complex 3 subunit sigma) (Sigma-adaptin 3) (Sigma3-adaptin),Clathrin adaptor complex small chain family protein DISRUPTION PHENOTYPE: No obvious phenotype. {ECO:0000269|PubMed:19884248}. FUNCTION: Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles (By similarity). {ECO:0000250}. 18729,16532 AP-3 complex subunit sigma (AP-3 complex subunit sigma-3) (Adaptor-related protein complex 3 subunit sigma) (Sigma-adaptin 3) (Sigma3-adaptin),Clathrin adaptor complex small chain family protein AP-3 adaptor complex [GO:0030123]; cytoplasmic vesicle membrane [GO:0030659]; Golgi apparatus [GO:0005794]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],AP-3 adaptor complex [GO:0030123]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2077922; AT3G50860 AP-3 complex subunit AP complex subunit sigma Q10PM8,A0A0P0V2K3 Q10PM8_ORYSJ,A0A0P0V2K3_ORYSJ Os03g0228400 LOC_Os03g12710 Os03g0228400 OSNPB_030228400,Os01g0353600 OSNPB_010353600 ENOG411DVA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatase 2C Probable protein phosphatase 2C 77 (OsPP2C77) (EC 3.1.3.16),Probable protein phosphatase 2C 74 (OsPP2C74) (EC 3.1.3.16),Os11g0242200 protein,Os12g0198200 protein (Fragment) Q2QWE3,Q53Q11,A0A0N7KSP4,A0A0P0Y7W8 P2C77_ORYSJ,P2C74_ORYSJ,A0A0N7KSP4_ORYSJ,A0A0P0Y7W8_ORYSJ Os12g0198200 LOC_Os12g09640 OsJ_034145,Os11g0242200 LOC_Os11g13820 OsJ_33495,Os11g0242200 OSNPB_110242200,Os12g0198200 OSNPB_120198200 ENOG411E7PT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os08g0241300 protein (cDNA clone:002-140-D02, full insert sequence) Q6Z3M3 Q6Z3M3_ORYSJ Os08g0241300 Os08g0241300 OsJ_26547 OSJNBa0087F21.25 OSNPB_080241300 P0031C02.30 ENOG411EA50 MNJ8.20 Q9FHS7 Q9FHS7_ARATH At5g37380/MNJ8_170 (Chaperone DnaJ-domain superfamily protein) (Similarity to DnaJ protein) 48253 At5g37380/MNJ8_170 (Chaperone DnaJ-domain superfamily protein) (Similarity to DnaJ protein) locus:2169170; AT5G37380 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411EHXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYXA Q9LPL8,Q84WN4,A0A1P8ATZ7,A8MQY2 Q9LPL8_ARATH,Q84WN4_ARATH,A0A1P8ATZ7_ARATH,A8MQY2_ARATH AT1G21350 protein (F24J8.1 protein) (Thioredoxin superfamily protein),At1g21350 (Thioredoxin superfamily protein) (Uncharacterized protein At1g21350),Thioredoxin superfamily protein 28089,17083,29502,24822 AT1G21350 protein (F24J8.1 protein) (Thioredoxin superfamily protein),At1g21350 (Thioredoxin superfamily protein) (Uncharacterized protein At1g21350),Thioredoxin superfamily protein chloroplast [GO:0009507]; antioxidant activity [GO:0016209]; oxidoreductase activity [GO:0016491]; cell redox homeostasis [GO:0045454],antioxidant activity [GO:0016209]; oxidoreductase activity [GO:0016491],cell [GO:0005623]; antioxidant activity [GO:0016209]; oxidoreductase activity [GO:0016491]; cell redox homeostasis [GO:0045454] locus:2027052; AT1G21350 Redoxin Os07g0260300 protein (cDNA clone:J013077B21, full insert sequence) Q7F229 Q7F229_ORYSJ OJ1370_E02.126 P0046D03.105 Os07g0260300 OsJ_23762 OSNPB_070260300 ENOG411DYXC T4C21_220 Q9LZY2,F4JCZ8 Q9LZY2_ARATH,F4JCZ8_ARATH At3g60810 (DUF1499 family protein) (Uncharacterized protein At3g60810) (Uncharacterized protein T4C21_220),DUF1499 family protein 24566,23956 At3g60810 (DUF1499 family protein) (Uncharacterized protein At3g60810) (Uncharacterized protein T4C21_220),DUF1499 family protein locus:2101826; AT3G60810 Protein of unknown function (DUF1499) Expressed protein (Os03g0858700 protein) (cDNA clone:001-038-A06, full insert sequence) (cDNA clone:J013001B23, full insert sequence) Q84M78 Q84M78_ORYSJ Os03g0858700 LOC_Os03g64140 Os03g0858700 OsJ_13444 OSJNBa0033P04.13 OSJNBa0059G06.5 OSNPB_030858700 ENOG411DYXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os05g0476700 protein (Fragment),Os03g0406400 protein,Os10g0169400 protein A0A0P0WNR0,A0A0P0VZF3,A0A0P0XS29 A0A0P0WNR0_ORYSJ,A0A0P0VZF3_ORYSJ,A0A0P0XS29_ORYSJ Os05g0476700 OSNPB_050476700,Os03g0406400 OSNPB_030406400,Os10g0169400 OSNPB_100169400 ENOG411DYXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os09g0422000 protein (Putative hydroxycinnamoyl transferase) (cDNA clone:J033071B22, full insert sequence) Q69P55 Q69P55_ORYSJ Os09g0422000 OJ1740_D06.24 OSNPB_090422000 ENOG411DYXD Q8GZ22 Q8GZ22_ARATH Ankyrin repeat family protein (At2g03430) (Putative ankyrin) 25921 Ankyrin repeat family protein (At2g03430) (Putative ankyrin) cell wall [GO:0005618] locus:2063804; AT2G03430 26S proteasome non-ATPase regulatory subunit 26S proteasome non-ATPase regulatory subunit 10, putative, expressed (Os03g0758400 protein) (Putative ankyrin) (cDNA clone:J013073E13, full insert sequence),Os03g0758400 protein (Fragment) Q9AUW0,A0A0P0W389 Q9AUW0_ORYSJ,A0A0P0W389_ORYSJ Os03g0758400 LOC_Os03g55110 OsJ_12657 OSJNBa0040E01.26 OSNPB_030758400,Os03g0758400 OSNPB_030758400 ENOG411DYXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein Leucine Rich Repeat family protein, expressed (Os11g0640600 protein),Os04g0491000 protein,Os11g0639100 protein,Os05g0585000 protein Q2R0M3,A0A0P0WC06,A0A0P0Y4P4,A0A0P0WR69 Q2R0M3_ORYSJ,A0A0P0WC06_ORYSJ,A0A0P0Y4P4_ORYSJ,A0A0P0WR69_ORYSJ Os11g0640600 LOC_Os11g42090 Os11g0640600 OSNPB_110640600,Os04g0491000 OSNPB_040491000,Os11g0639100 OSNPB_110639100,Os05g0585000 OSNPB_050585000 ENOG411DYXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0884800 protein A0A0P0VBD6 A0A0P0VBD6_ORYSJ Os01g0884800 OSNPB_010884800 ENOG411DYXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0481 protein Os07g0672300 protein (Fragment),Os12g0480800 protein,Os11g0543300 protein A0A0P0XAN5,A0A0P0YA12,A0A0N7KT14 A0A0P0XAN5_ORYSJ,A0A0P0YA12_ORYSJ,A0A0N7KT14_ORYSJ Os07g0672300 OSNPB_070672300,Os12g0480800 OSNPB_120480800,Os11g0543300 OSNPB_110543300 ENOG411DYXH Q94AC8,B9DG63 Q94AC8_ARATH,B9DG63_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (At4g28030/T13J8_140),AT4G28030 protein (Acyl-CoA N-acyltransferases (NAT) superfamily protein) 30417,29200 Acyl-CoA N-acyltransferases (NAT) superfamily protein (At4g28030/T13J8_140),AT4G28030 protein (Acyl-CoA N-acyltransferases (NAT) superfamily protein) chloroplast [GO:0009507]; protein acetyltransferase complex [GO:0031248]; peptide alpha-N-acetyltransferase activity [GO:0004596]; N-terminal protein amino acid acetylation [GO:0006474],transferase activity, transferring acyl groups [GO:0016746] locus:2132967; AT4G28030 Acetyltransferase (GNAT) family Os08g0260000 protein (cDNA, clone: J100064C22, full insert sequence) B7FAD0 B7FAD0_ORYSJ Os08g0260000 Os08g0260000 OSNPB_080260000 ENOG411DYXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0728100 protein,Os01g0728100 protein (Fragment) C7IWV5,A0A0P0V7N9 C7IWV5_ORYSJ,A0A0P0V7N9_ORYSJ Os01g0728100 Os01g0728100 OSNPB_010728100,Os01g0728100 OSNPB_010728100 ENOG411DYXP FDH1,FDH Q9S7E4,A0A1P8B9N1,A0A1P8B9L1 FDH_ARATH,A0A1P8B9N1_ARATH,A0A1P8B9L1_ARATH Formate dehydrogenase, chloroplastic/mitochondrial (FDH) (EC 1.2.1.2) (NAD-dependent formate dehydrogenase),Formate dehydrogenase, mitochondrial (FDH) (EC 1.2.1.2) (NAD-dependent formate dehydrogenase) FUNCTION: Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response. {ECO:0000255|HAMAP-Rule:MF_03210, ECO:0000269|Ref.3}.,FUNCTION: Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response. {ECO:0000256|HAMAP-Rule:MF_03210}. ARA:AT5G14780-MONOMER; Microbial metabolism in diverse environments (01120),Methane metabolism (00680),Glyoxylate and dicarboxylate metabolism (00630),Metabolic pathways (01100) 1.2.1.2 42410,39630,41038 Formate dehydrogenase, chloroplastic/mitochondrial (FDH) (EC 1.2.1.2) (NAD-dependent formate dehydrogenase),Formate dehydrogenase, mitochondrial (FDH) (EC 1.2.1.2) (NAD-dependent formate dehydrogenase) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; formate dehydrogenase (NAD+) activity [GO:0008863]; NAD binding [GO:0051287]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616]; response to cadmium ion [GO:0046686],mitochondrion [GO:0005739]; formate dehydrogenase (NAD+) activity [GO:0008863]; NAD binding [GO:0051287]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616]; formate catabolic process [GO:0042183] locus:2185500; AT5G14780 formate dehydrogenase Formate dehydrogenase 1, mitochondrial (FDH 1) (EC 1.17.1.9) (NAD-dependent formate dehydrogenase 1),Formate dehydrogenase 2, mitochondrial (FDH 2) (EC 1.17.1.9) (NAD-dependent formate dehydrogenase 2) Q9SXP2,Q67U69 FDH1_ORYSJ,FDH2_ORYSJ Os06g0486800 LOC_Os06g29180 P0008F02.23 P0404G03.8,Os06g0486900 LOC_Os06g29220 OsJ_21395 P0404G03.13 FUNCTION: Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response. {ECO:0000255|HAMAP-Rule:MF_03210}. ENOG411DYXS PHB2,PHB7,PHB1,PHB6 Q9ZNT7,Q9FFH5,O49460,Q9SIL6 PHB2_ARATH,PHB7_ARATH,PHB1_ARATH,PHB6_ARATH Prohibitin-2, mitochondrial (Atphb2),Prohibitin-7, mitochondrial (Atphb7),Prohibitin-1, mitochondrial (Atphb1),Prohibitin-6, mitochondrial (Atphb6) FUNCTION: Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins. {ECO:0000250}. 31811,30759,31706,31637 Prohibitin-2, mitochondrial (Atphb2),Prohibitin-7, mitochondrial (Atphb7),Prohibitin-1, mitochondrial (Atphb1),Prohibitin-6, mitochondrial (Atphb6) cell wall [GO:0005618]; chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506],integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774] TISSUE SPECIFICITY: Mostly expressed in proliferative tissues, including vasculature, shoot and root apical tissues. {ECO:0000269|PubMed:17883375}. locus:2024142;,locus:2167588;,locus:2121392;,locus:2054779; AT1G03860,AT5G44140,AT4G28510,AT2G20530 prohibitin 2 Mitochondrial prohibitin complex protein 2, putative, expressed (Os03g0841700 protein) (cDNA clone:001-025-E01, full insert sequence) (cDNA clone:J023028O17, full insert sequence),Os07g0262200 protein (Putative prohibitin) (cDNA clone:006-204-E01, full insert sequence),Os03g0814600 protein,Os03g0813200 protein (Fragment) Q10AT9,Q7EYR6,A0A0P0W4M8,A0A0P0W5J6 Q10AT9_ORYSJ,Q7EYR6_ORYSJ,A0A0P0W4M8_ORYSJ,A0A0P0W5J6_ORYSJ Os03g0841700 LOC_Os03g62490 Os03g0841700 OsJ_13315 OSNPB_030841700,P0046D03.138 P0483E06.106 Os07g0262200 OsJ_23767 OSNPB_070262200,Os03g0814600 OSNPB_030814600,Os03g0813200 OSNPB_030813200 ENOG411DYXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411DYXU AtSec20 Q1LYX4 Q1LYX4_ARATH At3g24315 (Sec20 family protein) 32837 At3g24315 (Sec20 family protein) integral component of membrane [GO:0016021] locus:505006367; AT3G24315 Sec20 Os02g0658900 protein (cDNA clone:J013073N06, full insert sequence) Q6H674 Q6H674_ORYSJ Os02g0658900 Os02g0658900 OJ1112_F09.34 OSNPB_020658900 P0708H12.13 ENOG411DYXT Q94EI9,Q9C8M1,A0A1P8ARD5,A0A1P8ARE8,A0A1P8ARI9,A0A1P8ARC8 PT314_ARATH,PT153_ARATH,A0A1P8ARD5_ARATH,A0A1P8ARE8_ARATH,A0A1P8ARI9_ARATH,A0A1P8ARC8_ARATH Probable sugar phosphate/phosphate translocator At3g14410,Probable sugar phosphate/phosphate translocator At1g53660,Nodulin MtN21 /EamA-like transporter family protein 37509,37006,39102,27645,33049,26272 Probable sugar phosphate/phosphate translocator At3g14410,Probable sugar phosphate/phosphate translocator At1g53660,Nodulin MtN21 /EamA-like transporter family protein cytosolic ribosome [GO:0022626]; integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021] locus:2090995;,locus:2024827; AT3G14410,AT1G53660 sugar phosphate phosphate translocator Os08g0135100 protein (Phosphate/phosphoenolpyruvate translocator protein-like) (cDNA clone:002-147-C04, full insert sequence) Q6YYC6 Q6YYC6_ORYSJ Os08g0135100 OsJ_25955 OSNPB_080135100 P0680F05.36 ENOG411DYXW NDPK3,NDK4 O49203,Q8LAH8,F4JPD8 NDK3_ARATH,NDK4_ARATH,F4JPD8_ARATH Nucleoside diphosphate kinase III, chloroplastic/mitochondrial (NDK III) (NDP kinase III) (NDPK III) (EC 2.7.4.6),Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial (NDK IV) (NDP kinase IV) (NDPK IV) (EC 2.7.4.6) (Nucleoside diphosphate kinase 4),Nucleoside diphosphate kinase (EC 2.7.4.6) FUNCTION: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Shows the highest specificity towards GDP (By similarity). {ECO:0000250}. ARA:AT4G11010-MONOMER;,ARA:AT4G23900-MONOMER; R-ATH-499943;R-ATH-6798695; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Pyrimidine metabolism (00240),Metabolic pathways (01100) 2.7.4.6 25734,25773,52000 Nucleoside diphosphate kinase III, chloroplastic/mitochondrial (NDK III) (NDP kinase III) (NDPK III) (EC 2.7.4.6),Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial (NDK IV) (NDP kinase IV) (NDPK IV) (EC 2.7.4.6) (Nucleoside diphosphate kinase 4),Nucleoside diphosphate kinase (EC 2.7.4.6) chloroplast thylakoid lumen [GO:0009543]; mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; nucleoside diphosphate kinase activity [GO:0004550]; zinc ion binding [GO:0008270]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; response to oxidative stress [GO:0006979]; UTP biosynthetic process [GO:0006228],chloroplast thylakoid lumen [GO:0009543]; intracellular [GO:0005622]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; nucleoside diphosphate kinase activity [GO:0004550]; zinc ion binding [GO:0008270]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; UTP biosynthetic process [GO:0006228],intracellular [GO:0005622]; ATP binding [GO:0005524]; nucleoside diphosphate kinase activity [GO:0004550]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; UTP biosynthetic process [GO:0006228] locus:2123421;,locus:2138101; AT4G11010,AT4G23900,AT4G23895 Nucleoside diphosphate kinase Nucleoside diphosphate kinase (EC 2.7.4.6) Q5TKF4 Q5TKF4_ORYSJ Os05g0595400 Os05g0595400 OSJNBa0030I14.12 OSJNBb0086G17.3 OSNPB_050595400 ENOG411DYXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os12g0225300 protein (Transposon protein, putative, unclassified, expressed),Os12g0225300 protein (Transposon protein, putative, unclassified, expressed) (cDNA clone:J013037J06, full insert sequence) Q2QVL7,Q0IPB9 Q2QVL7_ORYSJ,Q0IPB9_ORYSJ Os12g0225300 LOC_Os12g12380 OSNPB_120225300,Os12g0225300 LOC_Os12g12380 Os12g0225300 OSNPB_120225300 ENOG411DYXY DPD1 Q682U6 DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial (EC 3.1.11.-) (Mg2+-dependent DNA exonuclease) (Protein DEFECTIVE IN POLLEN DNA DEGRADATION 1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21521697}. FUNCTION: Exonuclease required for organelle DNA degradation during pollen development. Plays non-essential roles in maternal inheritance. May be part of the DNA salvage machinery. {ECO:0000269|PubMed:21521697, ECO:0000269|PubMed:21852754, ECO:0000269|PubMed:22239102}. MISCELLANEOUS: DPD1 homologs are present in flowering plants but not in moss, green algae and animals. {ECO:0000305|PubMed:21852754}. 3.1.11.- 35248 Exonuclease DPD1, chloroplastic/mitochondrial (EC 3.1.11.-) (Mg2+-dependent DNA exonuclease) (Protein DEFECTIVE IN POLLEN DNA DEGRADATION 1) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; exonuclease activity [GO:0004527]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; DNA catabolic process, exonucleolytic [GO:0000738] DEVELOPMENTAL STAGE: Starts to express at the bicellular pollen stage, with a peak at the tricellular pollen stage. {ECO:0000269|PubMed:21521697}. TISSUE SPECIFICITY: Highly expressed in mature pollen grains. Detected in flowers, senescing leaves and roots. {ECO:0000269|PubMed:21521697, ECO:0000269|PubMed:21852754}. locus:2148453; AT5G26940 DNA polymerase III Exonuclease family protein, expressed (Os03g0301400 protein) (cDNA clone:J033079C02, full insert sequence) Q10MN9 Q10MN9_ORYSJ LOC_Os03g18940 Os03g0301400 OSNPB_030301400 ENOG411DYXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic 7S NA NA NA NA NA NA NA ENOG411DYXZ Q9C6M2 LHTL6_ARATH Lysine histidine transporter-like 6 FUNCTION: Amino acid transporter. {ECO:0000250}. 48816 Lysine histidine transporter-like 6 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2031215; AT1G25530 Lysine histidine Os04g0462400 protein B9FFK2 B9FFK2_ORYSJ Os04g0462400 OsJ_15073 OSNPB_040462400 ENOG411DYX0 O64492 O64492_ARATH C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (F20D22.8 protein) 113934 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (F20D22.8 protein) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2020280; AT1G04150 Plant phosphoribosyltransferase C-terminal Os02g0816000 protein (Putative anthranilate phosphoribosyltransferase) (cDNA, clone: J065196G22, full insert sequence) Q6K6B6 Q6K6B6_ORYSJ Os02g0816000 Os02g0816000 OsJ_08865 OSNPB_020816000 P0643F09.11 ENOG411DYX3 T7M13.16 Q9SG82 Q9SG82_ARATH Homeodomain-like superfamily protein (T7M13.16 protein) 36114 Homeodomain-like superfamily protein (T7M13.16 protein) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2103247; AT3G10760 Myb-like DNA-binding domain Os05g0412000 protein A0A0P0WM79 A0A0P0WM79_ORYSJ Os05g0412000 OSNPB_050412000 ENOG411DYX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family Cinnamoyl-CoA reductase 1 (OsCCR1) (EC 1.2.1.44),Os02g0812000 protein,Os02g0811800 protein (Putative cinnamoyl CoA reductase) (cDNA clone:001-123-D09, full insert sequence),Cinnamoyl CoA reductase (Os02g0811400 protein),Os02g0811600 protein Q6K9A2,Q0DWJ7,Q6K3G2,Q6K5W5,A0A0P0VRA9 CCR1_ORYSJ,Q0DWJ7_ORYSJ,Q6K3G2_ORYSJ,Q6K5W5_ORYSJ,A0A0P0VRA9_ORYSJ CCR1 Os02g0808800 LOC_Os02g56460 OJ1112_G06.14 OJ1520_C09.26 OsJ_08807,Os02g0812000 Os02g0812000 OSNPB_020812000,Os02g0811800 Os02g0811800 OsJ_08830 OSJNBa0053L11.3 OSNPB_020811800 P0016F11.25,Os02g0811400 OsJ_08825 OSNPB_020811400 P0016F11.18,Os02g0811600 OSNPB_020811600 FUNCTION: Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. Probably involved in the formation of lignin in defense responses. {ECO:0000269|PubMed:16380417}. ENOG411DYX4 YMF16 P93312 YMF16_ARATH Uncharacterized tatC-like protein ymf16 (ORFX) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07716) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. 32560 Uncharacterized tatC-like protein ymf16 (ORFX) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; TAT protein transport complex [GO:0033281]; proton motive force dependent protein transmembrane transporter activity [GO:0009977]; intracellular protein transmembrane transport [GO:0065002]; protein transport by the Tat complex [GO:0043953] ATMG00570 Sec-independent protein translocase protein (TatC) Uncharacterized protein Q8HCQ4 Q8HCQ4_ORYSJ orfX ENOG411DYX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter Os10g0112500 protein (POT family protein, expressed) (Putative LeOPT1-oligopeptide transporter),Os10g0111300 protein,Os10g0110800 protein,Os10g0370700 protein (POT family protein, expressed) (cDNA clone:J013049E13, full insert sequence),Os10g0110800 protein (Fragment),Os10g0110600 protein,Os10g0110250 protein Q7G761,Q0IZB5,C7J804,Q339C7,A0A0P0XRF8,A0A0P0XQY0,A0A0P0XR23 Q7G761_ORYSJ,Q0IZB5_ORYSJ,C7J804_ORYSJ,Q339C7_ORYSJ,A0A0P0XRF8_ORYSJ,A0A0P0XQY0_ORYSJ,A0A0P0XR23_ORYSJ OJ1014H12.16 Os10g0112500 OSJNBb0012A20.15 LOC_Os10g02340 OSNPB_100112500,Os10g0111300 OSNPB_100111300,Os10g0110800 OSNPB_100110800,LOC_Os10g22560 Os10g0370700 OSNPB_100370700,Os10g0110600 OSNPB_100110600,Os10g0110250 OSNPB_100110250 ENOG411DYX9 EMB2217 Q9SAK0 PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial (Protein EMBRYO DEFECTIVE 2217) Embryo defective; Globular-D. Meinke-2004 94172 Pentatricopeptide repeat-containing protein At1g79490, mitochondrial (Protein EMBRYO DEFECTIVE 2217) mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2206385; AT1G79490 Pentatricopeptide repeat-containing protein Os04g0612800 protein A0A0P0WEN6 A0A0P0WEN6_ORYSJ Os04g0612800 OSNPB_040612800 ENOG411EG8W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling (By similarity) NA NA NA NA NA NA NA ENOG411EKE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E478 RPS12; P92532 RT12_ARATH Ribosomal protein S12, mitochondrial FUNCTION: Protein S12 is involved in the translation initiation step. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07675) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. 14248 Ribosomal protein S12, mitochondrial mitochondrion [GO:0005739]; small ribosomal subunit [GO:0015935]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] AT2G07675ATMG00980; Ribosomal protein S12 Ribosomal protein S12, mitochondrial,Ribosomal protein S12 P28520,Q7JAI8 RT12_ORYSJ,Q7JAI8_ORYSJ RPS12,rps12 FUNCTION: Protein S12 is involved in the translation initiation step. ENOG411E479 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0125900 protein) Q8S5W6,Q10SD7 Q8S5W6_ORYSJ,Q10SD7_ORYSJ Os03g0125900 LOC_Os03g03440 Os03g0125900 OJ1015F07.1 OsJ_09245 OSNPB_030125900,Os03g0125900 LOC_Os03g03440 OSNPB_030125900 ENOG411E472 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Expressed protein (Os03g0783800 protein) Q10CG4 Q10CG4_ORYSJ Os03g0783800 OSJNBb0093E13.12 LOC_Os03g57050 Os03g0783800 OSNPB_030783800 ENOG411E470 ACD22.3 Q84K79 IDM2L_ARATH Alpha-crystallin domain-containing protein 22.3 (AtAcd22.3) (Increased DNA methylation 2-like protein) 22298 Alpha-crystallin domain-containing protein 22.3 (AtAcd22.3) (Increased DNA methylation 2-like protein) nucleolus [GO:0005730] locus:2010995; AT1G54850 NA NA NA NA NA NA NA NA ENOG411E471 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0130300 protein Q8L535 Q8L535_ORYSJ Os10g0130300 OSJNAb0072F04.7 LOC_Os10g04030 OSJNBb0072F04.13 OSNPB_100130300 ENOG411E476 O82320 O82320_ARATH At2g25770 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At2g25770) 18798 At2g25770 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At2g25770) locus:2043575; AT2G25770 Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411E477 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0620100 protein,Os09g0325800 protein Q8L4F4,A0A0N7KQK6 Q8L4F4_ORYSJ,A0A0N7KQK6_ORYSJ P0560B08.127 Os07g0620100 P0594D10.109 OSNPB_070620100,Os09g0325800 OSNPB_090325800 ENOG411E474 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411E475 Q9M132 Q9M132_ARATH At4g01410 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Putative hypoersensitive response protein) 24448 At4g01410 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) (Putative hypoersensitive response protein) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] locus:2125157; AT4G01410 Late embryogenesis abundant protein Os05g0367900 protein Q0DIR9 Q0DIR9_ORYSJ Os05g0367900 Os05g0367900 OSNPB_050367900 ENOG411E47Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os09g0504700 protein (cDNA clone:001-023-C12, full insert sequence) (cDNA clone:J033075P09, full insert sequence),Os08g0526350 protein B7EMU6,A0A0N7KQ64 B7EMU6_ORYSJ,A0A0N7KQ64_ORYSJ Os09g0504700 OSNPB_090504700,Os08g0526350 OSNPB_080526350 ENOG411E47X T8K14.19 Q9SAK9 Q9SAK9_ARATH At1g79390 (Centrosomal protein) (T8K14.19 protein) (Uncharacterized protein At1g79390) 14561 At1g79390 (Centrosomal protein) (T8K14.19 protein) (Uncharacterized protein At1g79390) locus:2206370; AT1G79390 NA Os02g0495900 protein (cDNA, clone: J080087H24, full insert sequence) Q6K6Q8 Q6K6Q8_ORYSJ Os02g0495900 OSNPB_020495900 P0040H05.31 ENOG411E47Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0553200 protein (Protodermal factor-like) (Protodermal factor-like protein) (cDNA clone:001-035-C12, full insert sequence) (cDNA clone:006-304-A03, full insert sequence) (cDNA clone:006-310-E03, full insert sequence) (cDNA clone:J033068F09, full insert sequence) Q5Z9D5 Q5Z9D5_ORYSJ Os06g0553200 Os06g0553200 OsJ_21665 OSNPB_060553200 P0427B07.25 ENOG411E47R F4J3N4 F4J3N4_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein 41458 Calcium-dependent lipid-binding (CaLB domain) family protein locus:2102980; AT3G04360 C2 domain NA NA NA NA NA NA NA ENOG411E47S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seed maturation protein Os03g0747500 protein (Putative abscisic acid-inducible protein) (Seed maturation protein, expressed) (cDNA clone:002-135-H02, full insert sequence) Q94GQ6 Q94GQ6_ORYSJ OJ1124_H03.9 LOC_Os03g53620 Os03g0747500 OsJ_12561 OSNPB_030747500 ENOG411E47P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Regulator of nonsense transcripts NA NA NA NA NA NA NA ENOG411E47Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0199801 protein A0A0P0XZV7 A0A0P0XZV7_ORYSJ Os11g0199801 OSNPB_110199801 ENOG411E47V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Os04g0538900 protein A0A0P0WCY0 A0A0P0WCY0_ORYSJ Os04g0538900 OSNPB_040538900 ENOG411E47W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dehydration-responsive element-binding protein Dehydration-responsive element-binding protein 1F (Protein DREB1F) (Protein C-repeat-binding factor 2) (rCBF2) Q8S9Z5 DRE1F_ORYSJ DREB1F CBF2 ERF27 Os01g0968800 LOC_Os01g73770 OJ1656_A11.17 OsJ_004800 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. ENOG411E47T Q9FMP4,O82325 SF3B6_ARATH,O82325_ARATH Splicing factor 3B subunit 6-like protein (Pre-mRNA branch site p14-like protein),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At2g14870) FUNCTION: May be necessary for the splicing of pre-mRNA. {ECO:0000250}. R-ATH-72163;R-ATH-72165; 14383,11660 Splicing factor 3B subunit 6-like protein (Pre-mRNA branch site p14-like protein),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At2g14870) catalytic step 2 spliceosome [GO:0071013]; precatalytic spliceosome [GO:0071011]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; U2-type spliceosomal complex [GO:0005684]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398] locus:2177033;,locus:2060464; AT5G12190,AT2G14870 Pre-mRNA branch site Os03g0811700 protein (Pre-mRNA branch site p14, putative, expressed) (Putative RNA binding protein) (cDNA clone:001-025-D12, full insert sequence) (cDNA clone:J033064C03, full insert sequence) Q7XZG6 Q7XZG6_ORYSJ LOC_Os03g59710 Os03g0811700 OsJ_13072 OSJNBb0033J23.13 OSNPB_030811700 ENOG411E47U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os04g0644400 protein (Fragment) Q0J9L5 Q0J9L5_ORYSJ Os04g0644400 Os04g0644400 OSNPB_040644400 ENOG411E47J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAS1 NA NA NA NA NA NA NA ENOG411E47K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone H2A Probable histone H2A.5,Probable histone H2A.6,Probable histone H2A.4 Q94E96,Q75L11,Q6L500 H2A5_ORYSJ,H2A6_ORYSJ,H2A4_ORYSJ Os01g0502700 LOC_Os01g31800 OsJ_001872 P0507H06.22; Os03g0279200 LOC_Os03g17100 OsJ_009947,Os05g0113900 LOC_Os05g02300 OsJ_016124 OSJNBb0041A22.10,Os05g0461400 LOC_Os05g38640 OJ1281_H05.14 OJ1525_A02.1 OsJ_018061 OsJ_18822 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. ENOG411E47H MAJ23.60 Q9FT62,A0A1P8BD66 Q9FT62_ARATH,A0A1P8BD66_ARATH Peptidyl-tRNA hydrolase II (PTH2) family protein (Uncharacterized protein AT5g10700),Peptidyl-tRNA hydrolase II (PTH2) family protein 22595,20784 Peptidyl-tRNA hydrolase II (PTH2) family protein (Uncharacterized protein AT5g10700),Peptidyl-tRNA hydrolase II (PTH2) family protein aminoacyl-tRNA hydrolase activity [GO:0004045] locus:2159659; AT5G10700 peptidyl-tRNA hydrolase PTRHD1-like OSJNBb0015N08.9 protein (Os04g0605200 protein) (cDNA clone:002-138-D10, full insert sequence) Q7XNY2 Q7XNY2_ORYSJ Os04g0605200 Os04g0605200 OSJNBb0015N08.9 OSNPB_040605200 ENOG411E47I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2-EREBP transcription factor (OSJNBb0034G17.2 protein) (Os04g0549700 protein) (Transcription factor DREB) (cDNA clone:002-124-B03, full insert sequence) Q7XU22 Q7XU22_ORYSJ DREB Os04g0549700 OSJNBb0034G17.2 OSNPB_040549700 ENOG411E47N PHYL2.2,PHYL2.1 Q9LVV3,Q9STP2 PHL22_ARATH,PHL21_ARATH Phytolongin Phyl2.2,Phytolongin Phyl2.1 FUNCTION: Non-SNARE longin protein involved in membrane-trafficking machinery. {ECO:0000305|PubMed:19889231}. 30457,29203 Phytolongin Phyl2.2,Phytolongin Phyl2.1 integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906] locus:2168382;,locus:2137365; AT5G52990,AT4G27840 VAMP-like protein NA NA NA NA NA NA NA ENOG411E47M Q0WU80,F4KA06,B3H498,F4ICS6 Q0WU80_ARATH,F4KA06_ARATH,B3H498_ARATH,F4ICS6_ARATH Beta-galactosidase related protein,Nuclease 16386,34100,16717,38400 Beta-galactosidase related protein,Nuclease locus:2184226;,locus:4515102794;,locus:504956234; AT2G04378,AT5G28730,AT1G43722 Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411E47B MYC6.17 F4JYE8 F4JYE8_ARATH Nuclear transport factor 2 (NTF2) family protein 31620 Nuclear transport factor 2 (NTF2) family protein locus:2177906; AT5G41470 NA Os03g0862000 protein Q0DLI9 Q0DLI9_ORYSJ Os03g0862000 Os03g0862000 OSNPB_030862000 ENOG411E47C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os01g0200200 protein Q5QN00 Q5QN00_ORYSJ Os01g0200200 B1015E06.6 OsJ_00758 OSNPB_010200200 ENOG411E47A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E47F Q9LK89 Q9LK89_ARATH At3g27880 (Uncharacterized protein At3g27880) 27336 At3g27880 (Uncharacterized protein At3g27880) locus:2086425; AT3G27880 Protein of unknown function (DUF1645) Os05g0568800 protein Q6AUN6 Q6AUN6_ORYSJ Os05g0568800 Os05g0568800 OJ1781_H11.22 OsJ_19591 OSJNBa0040E06.4 OSNPB_050568800 ENOG411E47G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411E47D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0491516 protein A0A0P0XP78 A0A0P0XP78_ORYSJ Os09g0491516 OSNPB_090491516 ENOG411E47E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Embryo-specific protein (Expressed protein) (Os11g0582400 protein) (cDNA clone:002-142-C01, full insert sequence) (cDNA clone:J033021I15, full insert sequence) Q2R223 Q2R223_ORYSJ Os11g0582400 LOC_Os11g37270 Os11g0582400 OSNPB_110582400 ENOG411E38A FKBP20-1 Q9M2S7 FK201_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-1 (PPIase FKBP20-1) (EC 5.2.1.8) (FK506-binding protein 20-1) (AtFKBP20-1) (Immunophilin FKBP20-1) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. R-ATH-3371497;R-ATH-3371568; 5.2.1.8 20348 Peptidyl-prolyl cis-trans isomerase FKBP20-1 (PPIase FKBP20-1) (EC 5.2.1.8) (FK506-binding protein 20-1) (AtFKBP20-1) (Immunophilin FKBP20-1) (Rotamase) cytoplasm [GO:0005737]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077] locus:2100016; AT3G55520 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q65XG1,Q5N9W0 Q65XG1_ORYSJ,Q5N9W0_ORYSJ Os05g0458100 OJ1362_D02.6 OsJ_18799 OSNPB_050458100,Os01g0844300 Os01g0844300 OSNPB_010844300 P0406G08.35 ENOG411E38M MYB119,MYB64 Q9FIM4,Q9FY60 MY119_ARATH,MYB64_ARATH Transcription factor MYB119 (Myb-related protein 119) (AtMYB119),Transcription factor MYB64 (Myb-related protein 64) (AtMYB64) (Protein UAS-TAGGED ROOT PATTERNING 10) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but in the double mutant plants myb64 and myb119 the female gametophytes fail to cellularize, resulting in enlarged coenocytes with supernumerary nuclei. {ECO:0000269|PubMed:24068955}. FUNCTION: Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.,FUNCTION: Transcription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}. MISCELLANEOUS: The gain-of-function mutant upd10-D (T-DNA tagging) is infertile. {ECO:0000269|PubMed:23057675}. 48513,48086 Transcription factor MYB119 (Myb-related protein 119) (AtMYB119),Transcription factor MYB64 (Myb-related protein 64) (AtMYB64) (Protein UAS-TAGGED ROOT PATTERNING 10) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of cell division [GO:0051302]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Not expressed in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}.,DEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Expressed in the egg cell nucleus during stages FG5 and FG6. Expressed very weakly in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}. TISSUE SPECIFICITY: Expressed in ovary septum and stamen filament. {ECO:0000269|PubMed:24068955}.,TISSUE SPECIFICITY: Expressed in ovary septum. {ECO:0000269|PubMed:24068955}. locus:2154543;,locus:2184906; AT5G58850,AT5G11050 myb domain protein NA NA NA NA NA NA NA ENOG411E38N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ferredoxin NA NA NA NA NA NA NA ENOG411E38R F4JCB3 F4JCB3_ARATH Uncharacterized protein 73317 Uncharacterized protein locus:2091231; AT3G19610 Plant protein of unknown function (DUF936) NA NA NA NA NA NA NA ENOG411E38S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase RMA1H1-like NA NA NA NA NA NA NA ENOG411DZKE Q8GYT5,B3H4P0 Q8GYT5_ARATH,B3H4P0_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At3g13700/MMM17_13),RNA-binding (RRM/RBD/RNP motifs) family protein 31815,32880 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At3g13700/MMM17_13),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2091526; AT3G13700 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os06g0151200 protein (RNA-binding protein-like) (cDNA clone:J013157K21, full insert sequence) Q5VMK2 Q5VMK2_ORYSJ Os06g0151200 Os06g0151200 OSNPB_060151200 P0529C07.17 P0710H01.29 ENOG411DZKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os06g0161300 protein (Fragment),Os08g0344700 protein A0A0N7KLK7,A0A0N7KPP9 A0A0N7KLK7_ORYSJ,A0A0N7KPP9_ORYSJ Os06g0161300 OSNPB_060161300,Os08g0344700 OSNPB_080344700 ENOG411DZKN A0A1P8BC29,A0A1P8BC21,A0A1P8BC32,A0A1P8BC23,A0A1P8BC12,F4K107,F4K108,F4K106 A0A1P8BC29_ARATH,A0A1P8BC21_ARATH,A0A1P8BC32_ARATH,A0A1P8BC23_ARATH,A0A1P8BC12_ARATH,F4K107_ARATH,F4K108_ARATH,F4K106_ARATH Transducin/WD40 repeat-like superfamily protein 59409,58776,63474,51505,53302,62613,64414,60147 Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2182330; AT5G12920 WD40 Os02g0591600 protein (Fragment) A0A0P0VL34,A0A0P0VL25 A0A0P0VL34_ORYSJ,A0A0P0VL25_ORYSJ Os02g0591600 OSNPB_020591600 ENOG411DZKM Q5XF13,A0A1P8AMQ6,F4I1T5 Q5XF13_ARATH,A0A1P8AMQ6_ARATH,F4I1T5_ARATH At1g55535 (Transmembrane protein),Transmembrane protein 28719,27733,27627 At1g55535 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:504956115; AT1G55535 NA Os07g0223700 protein A0A0N7KN54 A0A0N7KN54_ORYSJ Os07g0223700 OSNPB_070223700 ENOG411DZKV MUK11.16 Q8L5X9,A0A1P8BBU8 Q8L5X9_ARATH,A0A1P8BBU8_ARATH At5g04840 (BZIP protein) (Uncharacterized protein At5g04840),BZIP protein 33433,26902 At5g04840 (BZIP protein) (Uncharacterized protein At5g04840),BZIP protein transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2175473; AT5G04840 BZIP protein B-zip protein (BZIP protein-like) (Os02g0538900 protein) (cDNA clone:001-118-H05, full insert sequence) Q6ER85 Q6ER85_ORYSJ Os02g0538900 Os02g0538900 OSJNBa0014M17.21 OSNPB_020538900 P0508B05.42 ENOG411DZKU YSL2,YSL3 Q6R3K9,Q2EF88,A0A1P8BFW1 YSL2_ARATH,YSL3_ARATH,A0A1P8BFW1_ARATH Metal-nicotianamine transporter YSL2 (Protein YELLOW STRIPE LIKE 2) (AtYSL2),Metal-nicotianamine transporter YSL3 (Protein YELLOW STRIPE LIKE 3) (AtYSL3),YELLOW STRIPE like 3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:15255869}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16815956}. Morphology and development of mutant plants grown in soil or in standard culture conditions was unaltered. When grown under iron deficiency mutant plants were comparable to wild type control. The same was observed when plants were grown under zinc copper and manganese deficiency. The metal content (measured by ICP-MS) was indistinguishable from those present in the wild type plants. FUNCTION: May be involved in the lateral transport of nicotianamine-chelated metals in the vasculature. {ECO:0000269|PubMed:15255869}.,FUNCTION: May be involved in the lateral transport of nicotianamine-chelated metals in the vasculature. {ECO:0000269|PubMed:16815956}. 72983,74149,56288 Metal-nicotianamine transporter YSL2 (Protein YELLOW STRIPE LIKE 2) (AtYSL2),Metal-nicotianamine transporter YSL3 (Protein YELLOW STRIPE LIKE 3) (AtYSL3),YELLOW STRIPE like 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-nicotianamine transmembrane transporter activity [GO:0051980]; ion transport [GO:0006811]; iron ion homeostasis [GO:0055072]; response to iron ion [GO:0010039]; response to zinc ion [GO:0010043]; seed development [GO:0048316],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006]; ion transport [GO:0006811]; iron ion homeostasis [GO:0055072]; response to iron ion [GO:0010039]; response to nematode [GO:0009624]; seed development [GO:0048316]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Highly expressed during leaf senescence. {ECO:0000269|PubMed:16815956}. TISSUE SPECIFICITY: Expressed in roots, leaves and weakly in shoots. Restricted to the veins, to the central cylinder of the young roots and to the pericycle and the endodermis cells facing the meta-xylem tubes in older roots. Expressed in the vasculature of sepals, petals, anthers, stigma and siliques, but not in developing seeds or in meristematic zones. {ECO:0000269|PubMed:15255869, ECO:0000269|PubMed:15753101}.,TISSUE SPECIFICITY: Expressed in leaves, anthers and pollen grains. Restricted to the vasculature. {ECO:0000269|PubMed:16815956}. locus:2152896;,locus:2168656; AT5G24380,AT5G53550 metal-nicotianamine transporter Probable metal-nicotianamine transporter YSL9 (Protein YELLOW STRIPE LIKE 9) (OsYSL9),Os04g0542200 protein (Fragment) Q7XUJ2,A0A0P0WDA4 YSL9_ORYSJ,A0A0P0WDA4_ORYSJ YSL9 Os04g0542200 LOC_Os04g45860 OSJNBb0103I08.11,Os04g0542200 OSNPB_040542200 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DZKT ABCB2,ABCB10,PGP10 Q8LPK2,Q9SGY1,A0A1P8AMY2 AB2B_ARATH,AB10B_ARATH,A0A1P8AMY2_ARATH ABC transporter B family member 2 (ABC transporter ABCB.2) (AtABCB2) (Multidrug resistance protein 2) (P-glycoprotein 2),ABC transporter B family member 10 (ABC transporter ABCB.10) (AtABCB10) (Multidrug resistance protein 10) (P-glycoprotein 10),p-glycoprotein 10 ARA:AT4G25960-MONOMER;,ARA:AT1G10680-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 139909,134475,129316 ABC transporter B family member 2 (ABC transporter ABCB.2) (AtABCB2) (Multidrug resistance protein 2) (P-glycoprotein 2),ABC transporter B family member 10 (ABC transporter ABCB.10) (AtABCB10) (Multidrug resistance protein 10) (P-glycoprotein 10),p-glycoprotein 10 integral component of membrane [GO:0016021]; membrane [GO:0016020]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Expressed in the sieve elements. {ECO:0000269|PubMed:25081480}. locus:2120805;,locus:2019958; AT4G25960,AT1G10680 ABC transporter B family member MDR-like ABC transporter (Os02g0693700 protein),Os02g0693700 protein (Putative MDR-like ABC transporter) Q8GU75,Q6Z894 Q8GU75_ORYSJ,Q6Z894_ORYSJ mdr11 OJ1148_D05.31-1 P0017H11.19-1 Os02g0693700 OsJ_08005 OSNPB_020693700,P0017H11.19-2 OJ1148_D05.31-2 Os02g0693700 OSNPB_020693700 ENOG411DZKR A0A1I9LNY2,F4J0F6 A0A1I9LNY2_ARATH,F4J0F6_ARATH Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like protein,Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit 18500,55335 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like protein,Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842] locus:2090749; AT3G28880 Ankyrin repeat Os12g0572800 protein,Os12g0587100 protein,Os12g0587166 protein A0A0P0YBS5,A0A0N7KUA3,A0A0P0YBZ5 A0A0P0YBS5_ORYSJ,A0A0N7KUA3_ORYSJ,A0A0P0YBZ5_ORYSJ Os12g0572800 OSNPB_120572800,Os12g0587100 OSNPB_120587100,Os12g0587166 OSNPB_120587166 ENOG411ECC5 Q9LQ95 Y1164_ARATH BTB/POZ domain-containing protein At1g01640 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. PATHWAY: Protein modification; protein ubiquitination. 23372 BTB/POZ domain-containing protein At1g01640 cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2198140; AT1G01640 BTB/POZ domain NA NA NA NA NA NA NA ENOG411ECC1 Q9M9P7 Q9M9P7_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (T17B22.2 protein) (Universal stress protein family protein) 31441 Adenine nucleotide alpha hydrolases-like superfamily protein (T17B22.2 protein) (Universal stress protein family protein) hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2097735; AT3G03290 NA NA NA NA NA NA NA NA ENOG411DZKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS family transcription factor containing protein GRAS family transcription factor containing protein (Os11g0706200 protein) (SCARECROW gene regulator, putative) Q53MB2 Q53MB2_ORYSJ Os11g0706200 LOC_Os11g47920 Os11g0706200 OsJ_34874 OSNPB_110706200 ENOG411ECC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os04g0246650 protein A0A0P0W852 A0A0P0W852_ORYSJ Os04g0246650 OSNPB_040246650 ENOG411ECC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411ECC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 16 NA NA NA NA NA NA NA ENOG411ECCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECCN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os01g0909600 protein C7IWR5 C7IWR5_ORYSJ Os01g0909600 Os01g0909600 OSNPB_010909600 ENOG411ECCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: glycoside hydrolase family protein NA NA NA NA NA NA NA ENOG411ECCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411ECCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formin Homology 2 Domain NA NA NA NA NA NA NA ENOG411ECCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase At4g08850-like NA NA NA NA NA NA NA ENOG411ECCT CSC1,OSCA1 Q5XEZ5,Q9XEA1 CSC1_ARATH,CSCL5_ARATH Calcium permeable stress-gated cation channel 1 (AtCSC1),Protein OSCA1 (CSC1-like protein At4g04340) (Protein reduced hyperosmolality-induced [Ca(2+)]i increase 1) DISRUPTION PHENOTYPE: Impaired osmotic Ca(2+) signaling in guard cells and root cells, and attenuated water transpiration regulation and root growth in response to osmotic stress. {ECO:0000269|PubMed:25162526}. FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. Specifically conducts cations including Ca(2+), K(+) and Na(+) in vitro. Inactivation or closure of the channel is calcium-dependent. {ECO:0000269|PubMed:24503647}.,FUNCTION: Acts as a hyperosmolarity-gated non-selective cation channel that permeates Ca(2+) ions. Shows the following permeability sequence: K(+) > Ba(2+) = Ca(2+) > Na(+) = Mg(2+) = Cs(+). {ECO:0000269|PubMed:25162526}. 87894,87607 Calcium permeable stress-gated cation channel 1 (AtCSC1),Protein OSCA1 (CSC1-like protein At4g04340) (Protein reduced hyperosmolality-induced [Ca(2+)]i increase 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calcium activated cation channel activity [GO:0005227]; cation transport [GO:0006812],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calcium activated cation channel activity [GO:0005227]; cation channel activity [GO:0005261]; cellular hyperosmotic response [GO:0071474]; protein tetramerization [GO:0051262]; regulation of calcium ion import [GO:0090279]; response to osmotic stress [GO:0006970] TISSUE SPECIFICITY: Expressed in leaves, flowers, roots and guard cells. {ECO:0000269|PubMed:25162526}. locus:2120673;,locus:2134882; AT4G22120,AT4G04340 Domain of unknown function DUF221 Os01g0534900 protein (Putative ERD4 protein) (cDNA clone:J033133I03, full insert sequence) Q5JLH8 Q5JLH8_ORYSJ Os01g0534900 OJ1029_F04.29 OsJ_02101 OSNPB_010534900 ENOG411ECCW Q501F6 Q501F6_ARATH Alpha/beta-Hydrolases superfamily protein (At3g03240) 38537 Alpha/beta-Hydrolases superfamily protein (At3g03240) hydrolase activity [GO:0016787] locus:2097800; AT3G03240 Esterase lipase thioesterase family protein NA NA NA NA NA NA NA ENOG411ECCV ATL38 O64762,A0A1P8AXK1 ATL38_ARATH,A0A1P8AXK1_ARATH RING-H2 finger protein ATL38 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL38),RING/U-box superfamily protein PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34171,36711 RING-H2 finger protein ATL38 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL38),RING/U-box superfamily protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021] locus:2044742; AT2G34990 RING NA NA NA NA NA NA NA ENOG411ECCQ F4I6Z0 F4I6Z0_ARATH Polyketide cyclase/dehydrase and lipid transport superfamily protein 15809 Polyketide cyclase/dehydrase and lipid transport superfamily protein defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2013910; AT1G70870 Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411ECCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AT_hook NA NA NA NA NA NA NA ENOG411ECCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os07g0137500 protein (Fragment),Os02g0508500 protein (Fragment) A0A0P0X2B9,A0A0P0VJD7 A0A0P0X2B9_ORYSJ,A0A0P0VJD7_ORYSJ Os07g0137500 OSNPB_070137500,Os02g0508500 OSNPB_020508500 ENOG411ECCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Os11g0524601 protein,Os11g0524900 protein,Os11g0524400 protein A0A0P0Y301,A0A0N7KT00,A0A0P0Y2K7 A0A0P0Y301_ORYSJ,A0A0N7KT00_ORYSJ,A0A0P0Y2K7_ORYSJ Os11g0524601 OSNPB_110524601,Os11g0524900 OSNPB_110524900,Os11g0524400 OSNPB_110524400 ENOG411ECCY WRKY68 Q93WV6 WRK68_ARATH Probable WRKY transcription factor 68 (WRKY DNA-binding protein 68) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 31678 Probable WRKY transcription factor 68 (WRKY DNA-binding protein 68) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2096019; AT3G62340 WRKY NA NA NA NA NA NA NA ENOG411ECCX Q8LGG8,Q9LYJ2 USPAL_ARATH,Q9LYJ2_ARATH Universal stress protein A-like protein,Adenine nucleotide alpha hydrolases-like superfamily protein (At5g14680) (Uncharacterized protein T15N1_170) 19568,19795 Universal stress protein A-like protein,Adenine nucleotide alpha hydrolases-like superfamily protein (At5g14680) (Uncharacterized protein T15N1_170) plasma membrane [GO:0005886]; AMP binding [GO:0016208]; response to stress [GO:0006950],hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2084153;,locus:2222687; AT3G01520,AT5G14680 Universal stress protein NA NA NA NA NA NA NA ENOG411ECCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411DZK7 Q84J78 SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial FUNCTION: Binds to ss-DNA. {ECO:0000269|Ref.4}. 22237 Single-stranded DNA-binding protein, mitochondrial mitochondrion [GO:0005739]; single-stranded DNA binding [GO:0003697] locus:2136083; AT4G11060 single-stranded DNA-binding protein Os05g0509700 protein (Putative single-strand DNA binding protein) (cDNA clone:J033045F21, full insert sequence) Q6L4W0 Q6L4W0_ORYSJ Os05g0509700 Os05g0509700 OSJNBb0108E17.20 OSNPB_050509700 ENOG411DZK6 AKR2B,AKR2A,AKR2 Q29Q26,Q9SAR5,F4JN17,F4JN13 AKR2B_ARATH,AKR2A_ARATH,F4JN17_ARATH,F4JN13_ARATH Ankyrin repeat domain-containing protein 2B,Ankyrin repeat domain-containing protein 2A (AtAKR2),Ankyrin repeat-containing protein 2 DISRUPTION PHENOTYPE: Lethal chlorotic phenotype when homozygote (PubMed:20215589). Reduced levels of chloroplast proteins, including outer envelope membrane (OEM) proteins. Defective chloroplast biogenesis (PubMed:18193034). Reduced APX3 levels and reduced targeting of APX3 to peroxisomes. Compromised peroxisomal function leading to increased sensivity to aminotriazole during seed germination and shorter hypocotyls in darkness in the absence of sucrose (PubMed:20215589). {ECO:0000269|PubMed:18193034, ECO:0000269|PubMed:20215589}. Dwarf; Small, curled rosette leaves; Late flowering-H. Zhang-2010 FUNCTION: Exhibits chaperone activity toward chloroplast outer envelope membrane, mitochondrion outer membrane, endoplasmic reticulum membrane and peroxisomal proteins, by recruiting specific proteins containing a single transmembrane associated with an AKR2A-binding sequence (ABS) and subsequently binding glycolipids (e.g. monogalactosyldiacylglycerol (MGDG) and phosphatidylglycerol (PG)) present in the membrane of the target organelle. {ECO:0000250|UniProtKB:Q9SAR5}.,FUNCTION: Exhibits chaperone activity toward chloroplast outer envelope membrane, mitochondrion outer membrane, endoplasmic reticulum membrane and peroxisomal proteins, by recruiting specific proteins containing a single transmembrane associated with an AKR2A-binding sequence (ABS) and subsequently binding glycolipids (e.g. monogalactosyldiacylglycerol (MGDG) and phosphatidylglycerol (PG)) present in the membrane of the target organelle (PubMed:18193034, PubMed:20215589, PubMed:25203210). Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6. Cytosolic targeting factor for chloroplast outer membrane (COM) proteins that mediates sorting and targeting of nascent chloroplast outer envelope membrane (OEM) proteins to the chloroplast. Facilitates the targeting of OEP7 to chloroplasts (PubMed:18193034). Facilitates the targeting of APX3 to peroxisomes. Involved in cellular metabolism (e.g. peroxisome activity) and required for plant growth and development (PubMed:20215589). {ECO:0000269|PubMed:11862948, ECO:0000269|PubMed:18193034, ECO:0000269|PubMed:20215589, ECO:0000269|PubMed:25203210}. 36899,36984,33074,38057 Ankyrin repeat domain-containing protein 2B,Ankyrin repeat domain-containing protein 2A (AtAKR2),Ankyrin repeat-containing protein 2 integral component of chloroplast outer membrane [GO:0031359]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; chloroplast targeting sequence binding [GO:0030941]; lipid binding [GO:0008289]; protein targeting to chloroplast [GO:0045036]; regulation of transcription, DNA-templated [GO:0006355],chloroplast outer membrane [GO:0009707]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; chloroplast targeting sequence binding [GO:0030941]; glycolipid binding [GO:0051861],cytoplasm [GO:0005737]; integral component of chloroplast outer membrane [GO:0031359]; nucleus [GO:0005634]; defense response to bacterium, incompatible interaction [GO:0009816]; post-embryonic development [GO:0009791]; protein folding [GO:0006457]; protein targeting to chloroplast [GO:0045036]; response to cadmium ion [GO:0046686]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Ubiquitously expressed at basal level. {ECO:0000269|PubMed:11862948}. locus:2827572;,locus:2117607; AT2G17390,AT4G35450 Ankyrin repeat domain-containing protein Os09g0513000 protein (Putative TGB12K interacting protein 3),Ankyrin repeat domain protein 2, putative, expressed (Os03g0851700 protein) (cDNA clone:J013130D01, full insert sequence),Os08g0539600 protein Q69IN8,Q851Y1,A0A0P0XIX5 Q69IN8_ORYSJ,Q851Y1_ORYSJ,A0A0P0XIX5_ORYSJ Os09g0513000 OsJ_02689 OSNPB_090513000 P0450E05.5,LOC_Os03g63480 Os03g0851700 OSJNBa0015N08.20 OSNPB_030851700,Os08g0539600 OSNPB_080539600 ENOG411DZK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os05g0533400 protein,Os05g0533301 protein,Os05g0533200 protein,Os05g0533450 protein Q6I5H2,A0A0P0WQ35,A0A0P0WQ44,A0A0P0WPQ6 Q6I5H2_ORYSJ,A0A0P0WQ35_ORYSJ,A0A0P0WQ44_ORYSJ,A0A0P0WPQ6_ORYSJ Os05g0533400 Os05g0533400 OsJ_19325 OSJNBa0053E05.14 OSNPB_050533400,Os05g0533301 OSNPB_050533301,Os05g0533200 OSNPB_050533200,Os05g0533450 OSNPB_050533450 ENOG411DZK4 Q4TU35,Q84JF9,B3H4E5 Q4TU35_ARATH,Q84JF9_ARATH,B3H4E5_ARATH At1g60610 (RING finger family protein) (SBP (S-ribonuclease binding protein) family protein) (Uncharacterized protein At1g60610),Putative S-ribonuclease binding protein SBP1 (RING domain protein) (SBP (S-ribonuclease binding protein) family protein),SBP (S-ribonuclease binding protein) family protein 38334,38249,32172 At1g60610 (RING finger family protein) (SBP (S-ribonuclease binding protein) family protein) (Uncharacterized protein At1g60610),Putative S-ribonuclease binding protein SBP1 (RING domain protein) (SBP (S-ribonuclease binding protein) family protein),SBP (S-ribonuclease binding protein) family protein locus:2036596;,locus:2019983; AT1G60610,AT1G10650 Inherit from KOG: protein binding zinc ion binding Os02g0130300 protein (Putative S-ribonuclease binding protein SBP1) (S-ribonuclease binding protein) (cDNA clone:J033104F07, full insert sequence),Os02g0130300 protein (Fragment) Q6ZGA0,A0A0P0VEB2,A0A0P0VEC3 Q6ZGA0_ORYSJ,A0A0P0VEB2_ORYSJ,A0A0P0VEC3_ORYSJ Os02g0130300 Os02g0130300 OJ1007_D04.4-2 OsJ_05244 OSNPB_020130300,Os02g0130300 OSNPB_020130300 ENOG411DZK3 Q3E983 Q3E983_ARATH Hyccin 38904 Hyccin locus:2147107; AT5G21050 Hyccin Expressed protein (Os03g0722000 protein) (cDNA clone:J023110O13, full insert sequence),Os03g0722000 protein (Fragment) Q6ASU1,A0A0P0W2G4 Q6ASU1_ORYSJ,A0A0P0W2G4_ORYSJ B1377B10.26 LOC_Os03g51210 Os03g0722000 OSNPB_030722000,Os03g0722000 OSNPB_030722000 ENOG411E3WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0499900 protein (cDNA clone:002-146-F01, full insert sequence),Os07g0500100 protein,Os07g0499001 protein,Os07g0500250 protein,Os07g0499150 protein Q69RN5,A0A0P0X5Z9,A0A0N7KNH4,A0A0P0X6F0,A0A0P0X673 Q69RN5_ORYSJ,A0A0P0X5Z9_ORYSJ,A0A0N7KNH4_ORYSJ,A0A0P0X6F0_ORYSJ,A0A0P0X673_ORYSJ Os07g0499900 Os07g0499900 OSJNBb0055I24.121 OSNPB_070499900,Os07g0500100 OSNPB_070500100,Os07g0499001 OSNPB_070499001,Os07g0500250 OSNPB_070500250,Os07g0499150 OSNPB_070499150 ENOG411EF0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWRI NAA25,MQJ2.5 F4KEY9,A0A1P8BDV1 NAA25_ARATH,A0A1P8BDV1_ARATH N-terminal acetyltransferase B complex auxiliary subunit NAA25 (N-terminal acetyltransferase B complex auxiliary subunit TCU2) (NatB N-alpha-terminal acetylation complex non-catalytic subunit) (Protein TRANSCURVATA 2),Tetratricopeptide repeat (TPR)-like superfamily protein DISRUPTION PHENOTYPE: Leaf reticulation, mild leaf folding, early flowering and aborted or unfertilized ovules in siliques (PubMed:24244708). No stunted growth or enhanced resistance to pathogens (PubMed:25966763). {ECO:0000269|PubMed:24244708, ECO:0000269|PubMed:25966763}. FUNCTION: Auxiliary subunit of the NatB N-alpha-acetyltransferase complex. Required for flowering time regulation and for vegetative and reproductive plant development. {ECO:0000269|PubMed:24244708}. 121463,114176 N-terminal acetyltransferase B complex auxiliary subunit NAA25 (N-terminal acetyltransferase B complex auxiliary subunit TCU2) (NatB N-alpha-terminal acetylation complex non-catalytic subunit) (Protein TRANSCURVATA 2),Tetratricopeptide repeat (TPR)-like superfamily protein cytosol [GO:0005829]; NatB complex [GO:0031416]; plasmodesma [GO:0009506]; N-terminal peptidyl-methionine acetylation [GO:0017196] TISSUE SPECIFICITY: Ubiquitously expressed, with a higher expression in vascular bundles, hydathodes, leaf primordia and the base of the trichomes. {ECO:0000269|PubMed:24244708}. locus:2171228; AT5G58450 N-acetyltransferase B complex (NatB) non catalytic subunit Os05g0345400 protein (cDNA clone:J033066L16, full insert sequence) Q5W6S3 Q5W6S3_ORYSJ Os05g0345400 B1036C05.8 OSNPB_050345400 ENOG411DWRH ALN Q94AP0,A0A1P8B436 ALN_ARATH,A0A1P8B436_ARATH Allantoinase (AtALN) (EC 3.5.2.5),Allantoinase DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are unable to grow on a medium containing allantoin as the sole nitrogen source, accumulate allantoin and have increased tolerance to drought and osmotic stresses. {ECO:0000269|PubMed:16496096, ECO:0000269|PubMed:23940254, ECO:0000269|PubMed:24182190}. Unable to grow with 10 mM allantoin as the sole nitrogen source. FUNCTION: Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoate by hydrolytic cleavage of the five-member hydantoin ring. Catalyzes the first step of the ureide allantoin degradation followed by the sequential activity of AAH, UGLYAH and UAH which allows a complete purine berakdown without the intermediate generation of urea. {ECO:0000269|PubMed:14976234, ECO:0000269|PubMed:16496096, ECO:0000269|PubMed:23940254}. MISCELLANEOUS: In Arabidopsis the intermediary metabolite allantoin plays a role in abiotic stress tolerance via activation of abscisic acid (ABA) metabolism. {ECO:0000305|PubMed:23940254}. PATHWAY: Nitrogen metabolism; (S)-allantoin degradation; allantoate from (S)-allantoin: step 1/1. ARA:AT4G04955-MONOMER; 3.5.2.5 55432,44489 Allantoinase (AtALN) (EC 3.5.2.5),Allantoinase endoplasmic reticulum [GO:0005783]; allantoinase activity [GO:0004038]; cobalt ion binding [GO:0050897]; zinc ion binding [GO:0008270]; allantoin catabolic process [GO:0000256]; cellular response to nitrogen starvation [GO:0006995]; purine nucleobase catabolic process [GO:0006145]; ureide catabolic process [GO:0010136],allantoinase activity [GO:0004038]; cobalt ion binding [GO:0050897]; zinc ion binding [GO:0008270]; allantoin catabolic process [GO:0000256] locus:505006432; AT4G04955 allantoinase Probable allantoinase (OsALN) (EC 3.5.2.5),Os04g0680400 protein B9FDB8,A0A0P0WGQ3 ALN_ORYSJ,A0A0P0WGQ3_ORYSJ ALN Os04g0680400 LOC_Os04g58390 OsJ_16648,Os04g0680400 OSNPB_040680400 FUNCTION: Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoate by hydrolytic cleavage of the five-member hydantoin ring. Catalyzes the first step of the ureide allantoin degradation followed by the sequential activity of AAH, UGLYAH and UAH which allows a complete purine berakdown without the intermediate generation of urea (By similarity). {ECO:0000250}. ENOG411DWRK F4IX22,F4IX23 F4IX22_ARATH,F4IX23_ARATH Metal ion-binding protein 141550,141168 Metal ion-binding protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein tyrosine phosphatase activity [GO:0004725] locus:2079577; AT3G62010 Inherit from euNOG: phosphatase domain containing paladin 1 Expressed protein (Os03g0586700 protein) Q6F2V0 Q6F2V0_ORYSJ OSJNBa0010D22.25 LOC_Os03g38970 Os03g0586700 OSNPB_030586700 ENOG411DWRJ BIOF Q8GW43,A0A1P8BG43 BIOF_ARATH,A0A1P8BG43_ARATH 8-amino-7-oxononanoate synthase (AONS) (EC 2.3.1.47) (7-keto-8-amino-pelargonic acid synthase) (7-KAP synthase) (KAPA synthase) (8-amino-7-ketopelargonate synthase) (Biotin synthase 4) (Biotin synthase F) (AtbioF),Biotin F DISRUPTION PHENOTYPE: Light-dependent spontaneous cell death due to the absence of D-biotin. Strong accumulation of hydrogen peroxide H(2)O(2) and constitutive up-regulation of reactive oxygen species- (ROS)-responsive and defense genes. Reduction of both chloroplastic and nuclear biotinylated proteins. Accumulation of conjugated salicylic acid (SA). {ECO:0000269|PubMed:22126457}. FUNCTION: Catalyzes the decarboxylative condensation of pimeloyl-[acyl-carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide (PubMed:16299174, PubMed:21730067). Required for the biosynthesis of D-biotin that prevents light-mediated cell death and modulates defense gene expression, probably by avoiding hydrogen peroxide H(2)O(2) accumulation (PubMed:22126457). {ECO:0000269|PubMed:16299174, ECO:0000269|PubMed:21730067, ECO:0000269|PubMed:22126457}. PATHWAY: Cofactor biosynthesis; biotin biosynthesis; 8-amino-7-oxononanoate from pimeloyl-CoA: step 1/1. {ECO:0000269|PubMed:16299174}. R-ATH-189451; 2.3.1.47; 2.3.1.47 52171,47268 8-amino-7-oxononanoate synthase (AONS) (EC 2.3.1.47) (7-keto-8-amino-pelargonic acid synthase) (7-KAP synthase) (KAPA synthase) (8-amino-7-ketopelargonate synthase) (Biotin synthase 4) (Biotin synthase F) (AtbioF),Biotin F cytosol [GO:0005829]; peroxisome [GO:0005777]; 8-amino-7-oxononanoate synthase activity [GO:0008710]; pyridoxal phosphate binding [GO:0030170]; biotin biosynthetic process [GO:0009102],integral component of membrane [GO:0016021]; catalytic activity [GO:0003824]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058] locus:2184397; AT5G04620 8-amino-7-oxononanoate Os01g0736400 protein (Putative 8-amino-7-oxononanoate synthase),Aminotransferase, classes I and II family protein, expressed (Os10g0560900 protein) (cDNA clone:J023099J24, full insert sequence),Os01g0736400 protein Q5JL51,Q7XC62,A0A0P0V7V6 Q5JL51_ORYSJ,Q7XC62_ORYSJ,A0A0P0V7V6_ORYSJ B1060H01.46-1 Os01g0736400 OSNPB_010736400,Os10g0560900 LOC_Os10g41150 Os10g0560900 OSNPB_100560900,Os01g0736400 OSNPB_010736400 ENOG411DWRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CUE domain Os02g0184500 protein Q0E3B5 Q0E3B5_ORYSJ Os02g0184500 Os02g0184500 OSNPB_020184500 ENOG411DWRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like Embryogenesis transmembrane protein-like (Os06g0296700 protein),Embryogenesis transmembrane protein-like (Os06g0294200 protein),Os06g0295300 protein,Os06g0296100 protein,Os06g0295600 protein,Os06g0295000 protein,Os06g0294400 protein Q5Z6J6,Q5ZA82,A0A0P0WVL6,A0A0P0WVH3,A0A0P0WVK3,A0A0P0WVH4,A0A0P0WVE2 Q5Z6J6_ORYSJ,Q5ZA82_ORYSJ,A0A0P0WVL6_ORYSJ,A0A0P0WVH3_ORYSJ,A0A0P0WVK3_ORYSJ,A0A0P0WVH4_ORYSJ,A0A0P0WVE2_ORYSJ Os06g0296700 Os06g0296700 OsJ_21048 OSJNBa0055N24.10 OSNPB_060296700 P0036B02.44,Os06g0294200 OSNPB_060294200 P0036B02.3,Os06g0295300 OSNPB_060295300,Os06g0296100 OSNPB_060296100,Os06g0295600 OSNPB_060295600,Os06g0295000 OSNPB_060295000,Os06g0294400 OSNPB_060294400 ENOG411DWRA Q4V3A2 Q4V3A2_ARATH At5g16170 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) 47494 At5g16170 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2181442; AT5G16170 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411DWRC APG Q9LU14 APG2_ARATH GDSL esterase/lipase APG (EC 3.1.1.-) (Extracellular lipase APG) ARA:AT3G16370-MONOMER; 3.1.1.- 38200 GDSL esterase/lipase APG (EC 3.1.1.-) (Extracellular lipase APG) apoplast [GO:0048046]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2094902; AT3G16370 GDSL esterase lipase Os06g0148200 protein (Putative lipase) (Putative nodulin) (cDNA clone:006-305-D07, full insert sequence) (cDNA clone:006-312-A01, full insert sequence) Q5VP33 Q5VP33_ORYSJ P0036F10.45-1 LIP1 P0624B04.5-1 Os06g0148200 OsJ_20126 OSNPB_060148200 ENOG411DWRB NUP1 Q9CAF4 NUP1_ARATH Nuclear pore complex protein NUP1 (Nuclear pore complex protein NUP136) (Nucleoporin 1) (Nucleoporin 136) DISRUPTION PHENOTYPE: Developmental defects, early flowering and altered nuclear morphology. Lethal when homozygous. {ECO:0000269|PubMed:19843313, ECO:0000269|PubMed:21189294}. FUNCTION: Nucleoporin required for nuclear mRNA export. Functions as an adapter and/or regulator molecule in the periphery of the nuclear pore complex (NPC). May interact with importin proteins and mediate active nucleocytoplasmic transport through the NPC. Involved in regulation of nuclear morphology. {ECO:0000269|PubMed:19843313, ECO:0000269|PubMed:21818409, ECO:0000305|PubMed:21189294}. MISCELLANEOUS: Represents a functional homolog of vertebrate Nup153. {ECO:0000305|PubMed:21189294}. 135933 Nuclear pore complex protein NUP1 (Nuclear pore complex protein NUP136) (Nucleoporin 1) (Nucleoporin 136) cytosol [GO:0005829]; nuclear envelope [GO:0005635]; nuclear periphery [GO:0034399]; nuclear pore [GO:0005643]; nucleus organization [GO:0006997]; poly(A)+ mRNA export from nucleus [GO:0016973] locus:2075785; AT3G10650 Has 51621 Blast hits to 25162 proteins in 1378 species Archae - 161 Os03g0788250 protein A0A0P0W409 A0A0P0W409_ORYSJ Os03g0788250 OSNPB_030788250 ENOG411DWRE PUMP4,PUMP5 Q9SB52,Q9SJY5 PUMP4_ARATH,PUMP5_ARATH Mitochondrial uncoupling protein 4 (AtPUMP4) (Mitochondrial dicarboxylate carrier 2),Mitochondrial uncoupling protein 5 (AtPUMP5) (Mitochondrial dicarboxylate carrier 1) FUNCTION: PUMPS are mitochondrial transporter proteins that create proton leaks across the inner mitochondrial membrane, thus uncoupling oxidative phosphorylation. This leads to a decrease in the efficiency of oxidative phosphorylation and an increase in heat production. May be involved in protecting plant cells against oxidative stress damage (By similarity). Recombinant PUMP4, reconstituted into liposomes, transports a wide range of dicarboxylic acids including malate, oxaloacetate and succinate as well as phosphate, sulfate and thiosulfate. However, it is unknown if these transports are of any biological significance in vivo. {ECO:0000250, ECO:0000269|PubMed:18039180}.,FUNCTION: PUMPS are mitochondrial transporter proteins that create proton leaks across the inner mitochondrial membrane, thus uncoupling oxidative phosphorylation. This leads to a decrease in the efficiency of oxidative phosphorylation and an increase in heat production. May be involved in protecting plant cells against oxidative stress damage. Recombinant PUMP5, reconstituted into liposomes, transports a wide range of dicarboxylic acids including malate, oxaloacetate and succinate as well as phosphate, sulfate and thiosulfate. However, it is unknown if these transports are of any biological significance in vivo. {ECO:0000269|PubMed:16473895, ECO:0000269|PubMed:18039180}. R-ATH-1614517;R-ATH-428643;R-ATH-70263; 32873,33357 Mitochondrial uncoupling protein 4 (AtPUMP4) (Mitochondrial dicarboxylate carrier 2),Mitochondrial uncoupling protein 5 (AtPUMP5) (Mitochondrial dicarboxylate carrier 1) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; antiporter activity [GO:0015297]; dicarboxylic acid transmembrane transporter activity [GO:0005310]; malate transmembrane transporter activity [GO:0015140]; oxaloacetate transmembrane transporter activity [GO:0015131]; phosphate transmembrane transporter activity [GO:1901677]; succinate transmembrane transporter activity [GO:0015141]; sulfate transmembrane transporter activity [GO:0015116]; thiosulfate transmembrane transporter activity [GO:0015117]; malate transmembrane transport [GO:0071423]; mitochondrial transport [GO:0006839]; oxaloacetate transport [GO:0015729]; phosphate ion transmembrane transport [GO:0035435]; succinate transmembrane transport [GO:0071422]; sulfate transport [GO:0008272]; thiosulfate transport [GO:0015709],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; antiporter activity [GO:0015297]; dicarboxylic acid transmembrane transporter activity [GO:0005310]; malate transmembrane transporter activity [GO:0015140]; oxaloacetate transmembrane transporter activity [GO:0015131]; oxidative phosphorylation uncoupler activity [GO:0017077]; phosphate transmembrane transporter activity [GO:1901677]; succinate transmembrane transporter activity [GO:0015141]; sulfate transmembrane transporter activity [GO:0015116]; thiosulfate transmembrane transporter activity [GO:0015117]; malate transmembrane transport [GO:0071423]; mitochondrial transport [GO:0006839]; oxaloacetate transport [GO:0015729]; phosphate ion transmembrane transport [GO:0035435]; proton transport [GO:0015992]; succinate transmembrane transport [GO:0071422]; sulfate transport [GO:0008272]; thiosulfate transport [GO:0015709] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16473895, ECO:0000269|PubMed:18039180}. locus:2121974;,locus:2041183; AT4G24570,AT2G22500 Mitochondrial 2-oxoglutarate malate carrier Os09g0465400 protein A0A0P0XP23 A0A0P0XP23_ORYSJ Os09g0465400 OSNPB_090465400 ENOG411DWRD mCSF1 Q8VYD9,A8MR13 CAF1M_ARATH,A8MR13_ARATH CRS2-associated factor 1, mitochondrial,RNA-binding CRS1 / YhbY (CRM) domain-containing protein FUNCTION: May be involved for the splicing of group IIB introns in mitochondrions. {ECO:0000250}. 46393,47164 CRS2-associated factor 1, mitochondrial,RNA-binding CRS1 / YhbY (CRM) domain-containing protein intracellular ribonucleoprotein complex [GO:0030529]; mitochondrion [GO:0005739]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; Group II intron splicing [GO:0000373]; mitochondrial respiratory chain complex I biogenesis [GO:0097031]; mitochondrial respiratory chain complex IV biogenesis [GO:0097034]; mRNA processing [GO:0006397],RNA binding [GO:0003723] locus:2126694; AT4G31010 CRS2-associated factor 1 CRS2-associated factor 1, mitochondrial Q6Z4U2 CAF1M_ORYSJ Os08g0174900 LOC_Os08g07790 OJ1134_B10.1 OSJNBa0054L03.32 FUNCTION: May be involved for the splicing of group IIB introns in mitochondrions. {ECO:0000250}. ENOG411DWRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411DWRF MKK2 Q9S7U9,B3H757 M2K2_ARATH,B3H757_ARATH Mitogen-activated protein kinase kinase 2 (AtMAP2Kbeta) (AtMKK2) (MAP kinase kinase 2) (EC 2.7.12.2),MAP kinase kinase 2 DISRUPTION PHENOTYPE: No obvious developmental defects under normal growth conditions. Simultaneous knockdown of MKK1 and MKK2 results in dwarf and small plants exhibiting a seedling-lethality phenotype. {ECO:0000269|PubMed:17506336, ECO:0000269|PubMed:18599650, ECO:0000269|PubMed:18982020}. Phenotype resembles MPK4 mutant.Leaves are dark green and curled.Constitutively overproduces SA and exhibits enhanced resistance to biotrophic pathogens. Insensitive to jasmonic acid.Enhanced basal expression of PR1 other SA dependent genes. Sensitive to low temperature and salt stress-H. Hirt-2004 FUNCTION: MEKK1, MKK1/MKK2 and MPK4 function in a signaling pathway that modulates the expression of genes responding to biotic and abiotic stresses and also plays an important role in pathogen defense by negatively regulating innate immunity. Plays a role in abiotic stress tolerance and plant disease resistance through activation of MPK4 and MPK6 by phosphorylation. Acts redundantly with MKK1. {ECO:0000269|PubMed:15225555, ECO:0000269|PubMed:17506336, ECO:0000269|PubMed:18599650, ECO:0000269|PubMed:18982020}. R-ATH-110056;R-ATH-112411;R-ATH-2559580;R-ATH-445144;R-ATH-450302;R-ATH-5674135;R-ATH-5674499; 2.7.12.2 39848,37266 Mitogen-activated protein kinase kinase 2 (AtMAP2Kbeta) (AtMKK2) (MAP kinase kinase 2) (EC 2.7.12.2),MAP kinase kinase 2 cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; MAP kinase kinase activity [GO:0004708]; protein serine/threonine kinase activity [GO:0004674]; auxin transport [GO:0060918]; cold acclimation [GO:0009631]; defense response, incompatible interaction [GO:0009814]; regulation of mitotic cell cycle [GO:0007346]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; stress-activated protein kinase signaling cascade [GO:0031098]; xylem and phloem pattern formation [GO:0010051],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2123909; AT4G29810 mitogen-activated protein kinase kinase Os06g0147800 protein (Putative MAP kinase kinase) (cDNA clone:J013094D16, full insert sequence),Os11g0226100 protein (Fragment) Q5VP37,A0A0P0Y187 Q5VP37_ORYSJ,A0A0P0Y187_ORYSJ Os06g0147800 Os06g0147800 OsJ_20122 OSNPB_060147800 P0036F10.40,Os11g0226100 OSNPB_110226100 ENOG411DWRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DWRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q6ZGX9 Q6ZGX9_ORYSJ Os02g0690600 Os02g0690600 OJ1743_B12.39 OSNPB_020690600 ENOG411DWRZ MRI1.6 A1A6F3,A2RVV4,F4KC29,F4KC30 A1A6F3_ARATH,A2RVV4_ARATH,F4KC29_ARATH,F4KC30_ARATH At5g57700 (BNR/Asp-box repeat family protein),BNR/Asp-box repeat family protein 39040,38479,38610,39713 At5g57700 (BNR/Asp-box repeat family protein),BNR/Asp-box repeat family protein locus:2172580; AT5G57700 Inherit from KOG: PHOsphatase Alpha-rhamnosidase-like protein (Os07g0516000 protein),Os07g0516050 protein (Fragment) Q7F0N4,A0A0P0X6J8 Q7F0N4_ORYSJ,A0A0P0X6J8_ORYSJ P0048D08.129 Os07g0516000 OSNPB_070516000 P0650C03.8,Os07g0516050 OSNPB_070516050 ENOG411DWRQ CRK42,CRK2 Q9FNE1,Q9CAL3,A0A1P8BEK8,A0A1P8BEL2 CRK42_ARATH,CRK2_ARATH,A0A1P8BEK8_ARATH,A0A1P8BEL2_ARATH Cysteine-rich receptor-like protein kinase 42 (Cysteine-rich RLK42) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 2 (Cysteine-rich RLK2) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 42 2.7.11.- 72706,72000,53850,62321 Cysteine-rich receptor-like protein kinase 42 (Cysteine-rich RLK42) (EC 2.7.11.-),Cysteine-rich receptor-like protein kinase 2 (Cysteine-rich RLK2) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 42 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777]; response to ozone [GO:0010193],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2170598;,locus:2026821; AT5G40380,AT1G70520 Cysteine-rich receptor-like protein kinase Os01g0548600 protein (Fragment),Os01g0548750 protein,Os05g0130100 protein A0A0P0V3T8,A0A0N7KD48,A0A0P0WHL2 A0A0P0V3T8_ORYSJ,A0A0N7KD48_ORYSJ,A0A0P0WHL2_ORYSJ Os01g0548600 OSNPB_010548600,Os01g0548750 OSNPB_010548750,Os05g0130100 OSNPB_050130100 ENOG411DWRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiE/COQ5 methyltransferase family NA NA NA NA NA NA NA ENOG411DWRS MSSP2,TMT2 Q8LPQ8,F4JMZ7 MSSP2_ARATH,F4JMZ7_ARATH Monosaccharide-sensing protein 2 (Sugar transporter MSSP2),Tonoplast monosaccharide transporter2 Although no variation in sucrose content of leaves placed under normal temperature conditions compared to wild type leaves a substantial decrease in sucrose content was observed when the plants were placed under cold treatment (24h).,No visible phenotype.,Under cold treatment (24h) the decrease in glucose and fructose content in leaves is more drastically reduced compared to that of wild type and even that of the tmt1 single mutants.,Under normal growth temperature conditions the double mutant leaves content in glucose and fructose is slightly reduced (~30%) in a similar fashion to that observed with the tmt1 single mutants.,The vacuoles of this mutant exhibit a substantially reduced capacity to import glucose.,Under normal temperature conditions a substantial reduction in glucose and fructose contents in leaves is observed compared to wild type and even the single tmt1 and double tmt1/tmt2 mutants. 78525,58518 Monosaccharide-sensing protein 2 (Sugar transporter MSSP2),Tonoplast monosaccharide transporter2 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2122138; AT4G35300 Monosaccharide-sensing protein Hexose transporter, putative, expressed (Os10g0539900 protein) (Putative sugar transporter) (Tonoplast monosaccharide transporter 1),Os03g0128932 protein,Os10g0539900 protein (Fragment),Os04g0654550 protein (Fragment) Q336W8,A0A0P0VSK4,A0A0P0XWP1,A0A0P0XWP3,A0A0P0XWP6,A0A0P0WFS2 Q336W8_ORYSJ,A0A0P0VSK4_ORYSJ,A0A0P0XWP1_ORYSJ,A0A0P0XWP3_ORYSJ,A0A0P0XWP6_ORYSJ,A0A0P0WFS2_ORYSJ OSJNBb0064P21.3 LOC_Os10g39440 Os10g0539900 OsJ_32308 OSNPB_100539900,Os03g0128932 OSNPB_030128932,Os10g0539900 OSNPB_100539900,Os04g0654550 OSNPB_040654550 ENOG411DWRR SKIP20 O80582,Q9M1Y1 FBK46_ARATH,SKI20_ARATH F-box/kelch-repeat protein At2g44130,F-box/kelch-repeat protein SKIP20 (SKP1-interacting partner 20) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 45887,45970 F-box/kelch-repeat protein At2g44130,F-box/kelch-repeat protein SKIP20 (SKP1-interacting partner 20) cytosol [GO:0005829]; regulation of phenylpropanoid metabolic process [GO:2000762],cytosol [GO:0005829]; nucleus [GO:0005634]; negative regulation of cytokinin-activated signaling pathway [GO:0080037]; protein ubiquitination [GO:0016567]; regulation of phenylpropanoid metabolic process [GO:2000762] locus:2051879;,locus:2080432; AT2G44130,AT3G59940 F-box kelch-repeat protein Kelch motif family protein, expressed (Kelch motif, putative) (Os11g0246200 protein) Q53NA8 Q53NA8_ORYSJ LOC_Os11g14140 Os11g0246200 OSNPB_110246200 ENOG411DWRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin superfamily protein Os04g0659150 protein A0A0P0WFU7 A0A0P0WFU7_ORYSJ Os04g0659150 OSNPB_040659150 ENOG411DWRT PA200 F4JC97 PSME4_ARATH Proteasome activator subunit 4 (Proteasome activator PA200) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20516081}. FUNCTION: Associated component of the proteasome that specifically recognizes acetylated histones and promotes ATP- and ubiquitin-independent degradation of core histones during DNA damage response. Recognizes and binds acetylated histones via its bromodomain-like (BRDL) region and activates the proteasome by opening the gated channel for substrate entry. Binds to the core proteasome via its C-terminus, which occupies the same binding sites as the proteasomal ATPases, opening the closed structure of the proteasome via an active gating mechanism. involved in DNA damage response: binds to acetylated histones and promotes degradation of histones (By similarity). {ECO:0000250}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 202946 Proteasome activator subunit 4 (Proteasome activator PA200) cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome core complex [GO:0005839]; lysine-acetylated histone binding [GO:0070577]; peptidase activator activity [GO:0016504]; proteasome binding [GO:0070628]; DNA repair [GO:0006281]; proteasomal ubiquitin-independent protein catabolic process [GO:0010499] locus:2088140; AT3G13330 proteasome activator Os06g0301300 protein (Fragment) A0A0N7KLZ4 A0A0N7KLZ4_ORYSJ Os06g0301300 OSNPB_060301300 ENOG411DWRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF793) Os02g0109200 protein (Fragment),Os02g0109200 protein (cDNA clone:002-151-E05, full insert sequence),Os09g0315250 protein,Os03g0584148 protein Q0E4N1,Q6ETS7,A0A0P0XLJ8,A0A0P0VZM4 Q0E4N1_ORYSJ,Q6ETS7_ORYSJ,A0A0P0XLJ8_ORYSJ,A0A0P0VZM4_ORYSJ Os02g0109200 Os02g0109200 OSNPB_020109200,Os02g0109200 OSNPB_020109200 P0017C12.31,Os09g0315250 OSNPB_090315250,Os03g0584148 OSNPB_030584148 ENOG411DWRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease Os01g0878700 protein (Putative amino acid carrier) (cDNA clone:001-203-C05, full insert sequence) (cDNA clone:J013002M14, full insert sequence) (cDNA clone:J033051N12, full insert sequence) Q5N9H2 Q5N9H2_ORYSJ Os01g0878700 Os01g0878700 OSNPB_010878700 P0018C10.17 P0471B04.28 ENOG411DWR9 ATXR7,SDG25 F4K1J4,A0A1P8BBK4 ATXR7_ARATH,A0A1P8BBK4_ARATH Histone-lysine N-methyltransferase ATXR7 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 25) (Trithorax-related protein 7),SET domain protein 25 DISRUPTION PHENOTYPE: Early flowering (PubMed:19726574, PubMed:19855050). Reduced seed dormancy and increased germination rate of freshly harvested seeds (PubMed:21799800). {ECO:0000269|PubMed:19726574, ECO:0000269|PubMed:19855050, ECO:0000269|PubMed:21799800}. Decreased young leaf number; Early flowering independent of photoperiod-R. Amasino-2009 FUNCTION: Histone methyltransferase involved in regulation of flowering time. Required for the expression of the flowering repressors FLC and MADS-box genes of the MAF family (PubMed:19726574, PubMed:19855050). Required for histone H3 dimethylation on 'Lys-36' H3K36me2 at the FLC locus (PubMed:19726574). Required for histone H3 trimethylation on 'Lys-4' (H3K4me3) at the FLC locus. Prevents trimethylation on 'Lys-27' (H3K27me3) at the same locus (PubMed:19855050). Involved in the control of seed dormancy and germination (PubMed:21799800). {ECO:0000269|PubMed:19726574, ECO:0000269|PubMed:19855050, ECO:0000269|PubMed:21799800}. 2.1.1.43 158663,154275 Histone-lysine N-methyltransferase ATXR7 (EC 2.1.1.43) (Protein SET DOMAIN GROUP 25) (Trithorax-related protein 7),SET domain protein 25 cytoplasm [GO:0005737]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; flower development [GO:0009908]; histone H3-K36 methylation [GO:0010452]; histone H3-K4 methylation [GO:0051568]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; methyltransferase activity [GO:0008168] TISSUE SPECIFICITY: Expressed in the shoot and root apices, vascular tissues and mesophyll cells of rosette leaves. {ECO:0000269|PubMed:19855050}. locus:2162346; AT5G42400 Set domain Os12g0613200 protein (SET domain containing protein, expressed),Os12g0613200 protein (Fragment) Q2QM91,A0A0P0YC07,A0A0P0YD17 Q2QM91_ORYSJ,A0A0P0YC07_ORYSJ,A0A0P0YD17_ORYSJ Os12g0613200 LOC_Os12g41900 Os12g0613200 OSNPB_120613200,Os12g0613200 OSNPB_120613200 ENOG411DWR8 BAC1,MBAC1 Q84UC7,A0A1P8B094,A0A1P8B0A2,A0A1P8B093 BAC1_ARATH,A0A1P8B094_ARATH,A0A1P8B0A2_ARATH,A0A1P8B093_ARATH Mitochondrial arginine transporter BAC1 (Mitochondrial basic amino acid carrier 1) (AtMBAC1),Mitochondrial substrate carrier family protein FUNCTION: Mitochondrial arginine transporter that catalyzes the counter-exchange of arginine with lysine, ornithine, arginine and histidine. Substrate preference in reconstituted proteoliposomes is arginine > lysine > ornithine > histidine. May be involved in the delivery of arginine, released from seed reserves, to mitochondrial arginase and the export of ornithine. {ECO:0000269|PubMed:12631327, ECO:0000269|PubMed:16730327}. R-ATH-70635; 33727,34738,29685,25001 Mitochondrial arginine transporter BAC1 (Mitochondrial basic amino acid carrier 1) (AtMBAC1),Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; arginine transmembrane transporter activity [GO:0015181]; L-histidine transmembrane transporter activity [GO:0005290]; L-lysine transmembrane transporter activity [GO:0015189]; mitochondrial ornithine transport [GO:0000066]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; transport [GO:0006810] TISSUE SPECIFICITY: High expression in flowers and siliques. Lower expression in leaves and stems. {ECO:0000269|PubMed:12631327}. locus:2057671; AT2G33820 mitochondrial substrate carrier family protein Os11g0423800 protein,Os12g0270600 protein A0A0P0Y1K6,A0A0P0Y916 A0A0P0Y1K6_ORYSJ,A0A0P0Y916_ORYSJ Os11g0423800 OSNPB_110423800,Os12g0270600 OSNPB_120270600 ENOG411DWR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Os02g0120200 protein (Phospholipase D delta isoform 1b-like protein) Q6YUS5 Q6YUS5_ORYSJ Os02g0120200 OJ1020_C02.3 OSJNBb0088N06.12 OSNPB_020120200 ENOG411DWR0 F15H21.15 Q9C7V1,Q9C702,A0A1P8AUN6,A0A1P8AUQ0,F4I6P0,A0A1P8AUM5 Q9C7V1_ARATH,Q9C702_ARATH,A0A1P8AUN6_ARATH,A0A1P8AUQ0_ARATH,F4I6P0_ARATH,A0A1P8AUM5_ARATH MuDR family transposase (Uncharacterized protein F15H21.15),MuDR family transposase (Uncharacterized protein T18C15_1),DEK carboxy-terminal domain protein,MuDR family transposase 83215,90366,45185,36358,85540,20825 MuDR family transposase (Uncharacterized protein F15H21.15),MuDR family transposase (Uncharacterized protein T18C15_1),DEK carboxy-terminal domain protein,MuDR family transposase zinc ion binding [GO:0008270] locus:2014230;,locus:2197122;,locus:1006230722; AT1G64260,AT1G49920,AT1G64255 MULE transposase domain Os12g0597300 protein (Transposon protein, putative, Mutator sub-class, expressed) Q2QMP0 Q2QMP0_ORYSJ LOC_Os12g40530 Os12g0597300 OsJ_36747 OSNPB_120597300 ENOG411DWR3 EMB976 O04647,A0A1P8BE14,A0A1P8BE00,A0A1P8BDZ0 PP399_ARATH,A0A1P8BE14_ARATH,A0A1P8BE00_ARATH,A0A1P8BDZ0_ARATH Pentatricopeptide repeat-containing protein At5g27270 (Protein EMBRYO DEFECTIVE 976),Tetratricopeptide repeat (TPR)-like superfamily protein Embryo defective; Cotyledon-H. Mireau-2007 117451,93581,101217,92792 Pentatricopeptide repeat-containing protein At5g27270 (Protein EMBRYO DEFECTIVE 976),Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2181286; AT5G27270 Pentatricopeptide repeat-containing protein Os06g0111300 protein A0A0P0WS22 A0A0P0WS22_ORYSJ Os06g0111300 OSNPB_060111300 ENOG411DWR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os01g0937800 protein (Putative xylanase inhibitor),Os01g0937600 protein (Putative xylanase inhibitor) (cDNA clone:002-100-D09, full insert sequence),Os01g0937500 protein (Putative xylanase inhibitor) (cDNA clone:002-153-E08, full insert sequence) Q8S1U4,Q8S1U6,Q8S1U7 Q8S1U4_ORYSJ,Q8S1U6_ORYSJ,Q8S1U7_ORYSJ Os01g0937800 OsJ_04703 OSNPB_010937800 P0504E02.21,Os01g0937600 OsJ_04702 OSNPB_010937600 P0504E02.18,Os01g0937500 Os01g0937500 OsJ_04701 OSNPB_010937500 P0504E02.17 ENOG411DWR4 RAP2-2,RAP2-12,RAP2.12 Q9LUM4,Q9SSA8,A8MRC0 RAP22_ARATH,RA212_ARATH,A8MRC0_ARATH Ethylene-responsive transcription factor RAP2-2 (AtRAP2.2) (Protein RELATED TO APETALA2 2),Ethylene-responsive transcription factor RAP2-12 (Protein RELATED TO APETALA2 12),Related to AP2 12 DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:17873090}. No homozygous mutant plants recovered-P. Beyer-2008 FUNCTION: Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.,FUNCTION: Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. MISCELLANEOUS: The N-terminus qualifies RAP2-12 as candidate substrate of the N-end rule pathway for protein destabilization. The oxygen-dependent oxidation of Cys-2 prevents hypoxic gene expression via the destabilization of RAP2-12 in air. When the oxygen concentration decreases, Cys oxidation is prevented and an active RAP2.12 accumulates in the nucleus. 42526,39801,39657 Ethylene-responsive transcription factor RAP2-2 (AtRAP2.2) (Protein RELATED TO APETALA2 2),Ethylene-responsive transcription factor RAP2-12 (Protein RELATED TO APETALA2 12),Related to AP2 12 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; regulation of gene expression [GO:0010468]; response to hypoxia [GO:0001666]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; plasma membrane [GO:0005886]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; detection of hypoxia [GO:0070483]; ethylene-activated signaling pathway [GO:0009873]; response to hypoxia [GO:0001666]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}.,TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. locus:2090975;,locus:2197076; AT3G14230,AT1G53910 Transcription factor Os09g0286600 protein (Fragment),AP2/ERF domain protein (C-repeat/DRE-binding factor-like protein) (Os09g0286600 protein) (cDNA clone:J013007H05, full insert sequence) Q0J2X0,Q6EN68 Q0J2X0_ORYSJ,Q6EN68_ORYSJ Os09g0286600 OSNPB_090286600,Os09g0286600 OsJ_28693 OSNPB_090286600 P0453B09.1 P0663H05.17 ENOG411DWR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWR6 A0A1P8AQL5,A0A1P8AQ77,A0A1P8AQ71,A0A1P8AQ61,A0A1P8AQ50,F4I2M6,F4I2M8 A0A1P8AQL5_ARATH,A0A1P8AQ77_ARATH,A0A1P8AQ71_ARATH,A0A1P8AQ61_ARATH,A0A1P8AQ50_ARATH,F4I2M6_ARATH,F4I2M8_ARATH Rhamnogalacturonate lyase family protein 72244,72571,75290,71925,62615,70721,77090 Rhamnogalacturonate lyase family protein carbohydrate binding [GO:0030246]; lyase activity [GO:0016829]; carbohydrate metabolic process [GO:0005975] locus:2024427;,locus:2024331; AT1G09890,AT1G09910 Rhamnogalacturonate lyase Os08g0554100 protein,Os08g0554100 protein (Fragment),Os08g0554300 protein Q0J3T7,A0A0N7KQ99,A0A0P0XJ48 Q0J3T7_ORYSJ,A0A0N7KQ99_ORYSJ,A0A0P0XJ48_ORYSJ Os08g0554100 Os08g0554100 OSNPB_080554100,Os08g0554100 OSNPB_080554100,Os08g0554300 OSNPB_080554300 ENOG411EJY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA-directed RNA polymerases I and III NA NA NA NA NA NA NA ENOG411EF0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP NA NA NA NA NA NA NA ENOG411E0SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfite exporter TauE/SafE NA NA NA NA NA NA NA ENOG411DTZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYSc Os02g0545000 protein (Fragment),Os03g0860801 protein,Os02g0816900 protein (Fragment),Os03g0860700 protein Q0E0J7,A0A0P0W5U4,A0A0P0VRB1,A0A0P0W5T6 Q0E0J7_ORYSJ,A0A0P0W5U4_ORYSJ,A0A0P0VRB1_ORYSJ,A0A0P0W5T6_ORYSJ Os02g0545000 Os02g0545000 OSNPB_020545000,Os03g0860801 OSNPB_030860801,Os02g0816900 OSNPB_020816900,Os03g0860700 OSNPB_030860700 ENOG411DTZ1 TTL Q9LVM5 TTHL_ARATH Uric acid degradation bifunctional protein TTL (Transthyretin-like protein) [Includes: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (OHCU decarboxylase) (EC 4.1.1.97); 5-hydroxyisourate hydrolase (HIU hydrolase) (HIUHase) (EC 3.5.2.17)] FUNCTION: Involved in the last two steps of the degradation of uric acid, i.e. the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) and its stereoselective decarboxylation to (S)-allantoin. Might function as a negative regulator to modulate brassinosteroid-mediated plant growth. PATHWAY: Purine metabolism; urate degradation; (S)-allantoin from urate: step 2/3.; PATHWAY: Purine metabolism; urate degradation; (S)-allantoin from urate: step 3/3. ARA:AT5G58220-MONOMER;MetaCyc:AT5G58220-MONOMER; 4.1.1.97; 4.1.1.97; 3.5.2.17 35564 Uric acid degradation bifunctional protein TTL (Transthyretin-like protein) [Includes: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (OHCU decarboxylase) (EC 4.1.1.97); 5-hydroxyisourate hydrolase (HIU hydrolase) (HIUHase) (EC 3.5.2.17)] cytosol [GO:0005829]; extrinsic component of cytoplasmic side of plasma membrane [GO:0031234]; peroxisome [GO:0005777]; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity [GO:0051997]; hydroxyisourate hydrolase activity [GO:0033971]; allantoin biosynthetic process [GO:0019428]; brassinosteroid mediated signaling pathway [GO:0009742]; protein homotetramerization [GO:0051289]; purine nucleobase metabolic process [GO:0006144]; regulation of cell growth by extracellular stimulus [GO:0001560]; urate catabolic process [GO:0019628] TISSUE SPECIFICITY: Expressed ubiquitously. locus:2161208; AT5G58220 5-hydroxyisourate hydrolase Os03g0390700 protein (Putative transthyretin, having alternative splicing products) (Transthyretin family protein, expressed) (cDNA clone:J033133F17, full insert sequence) Q7XXQ9 Q7XXQ9_ORYSJ LOC_Os03g27320 Os03g0390700 OsJ_11117 OSJNBa0017N12.4 OSNPB_030390700 ENOG411E3N9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic family of unknown function (DUF1754) Os02g0727500 protein (Fragment) A0A0P0VP65 A0A0P0VP65_ORYSJ Os02g0727500 OSNPB_020727500 ENOG411EHU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E29Z MNF13.9 Q6NPE4,Q9LY85,Q9FM40,A8MRG2 Q6NPE4_ARATH,Q9LY85_ARATH,Q9FM40_ARATH,A8MRG2_ARATH At5g14440 (Surfeit locus protein 2 (SURF2)),Surfeit locus protein 2 (SURF2) (Uncharacterized protein At5g14440) (Uncharacterized protein F18O22_230),Emb|CAB87783.1 (Surfeit locus protein 2 (SURF2)),Surfeit locus protein 2 (SURF2) 33397,33310,22915,23716 At5g14440 (Surfeit locus protein 2 (SURF2)),Surfeit locus protein 2 (SURF2) (Uncharacterized protein At5g14440) (Uncharacterized protein F18O22_230),Emb|CAB87783.1 (Surfeit locus protein 2 (SURF2)),Surfeit locus protein 2 (SURF2) locus:2145678;,locus:2168823; AT5G14440,AT5G40570 surfeit locus protein Os04g0480400 protein (cDNA clone:J023001A15, full insert sequence) B7EFQ5 B7EFQ5_ORYSJ Os04g0480400 OSNPB_040480400 ENOG411E29X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411E29Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED Os09g0381900 protein A0A0P0XLN1 A0A0P0XLN1_ORYSJ Os09g0381900 OSNPB_090381900 ENOG411E29V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E29W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os06g0724500 protein (Transducin family protein-like) Q5Z991 Q5Z991_ORYSJ Os06g0724500 OsJ_22697 OSNPB_060724500 P0535F09.36 P0548E04.3 ENOG411E29T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411E29U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alginate lyase Citrate binding protein, putative (Os12g0166300 protein) Q2QX80 Q2QX80_ORYSJ Os12g0166300 LOC_Os12g06900 OSNPB_120166300 ENOG411E29R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411E29S TIC214; TIC214,; P56785,P93296,A0A1P8B0A1 TI214_ARATH,M370_ARATH,A0A1P8B0A1_ARATH Protein TIC 214 (Translocon at the inner envelope membrane of chloroplasts 214) (AtTIC214),Uncharacterized mitochondrial protein AtMg00370 (ORF199),Ycf1 domain protein FUNCTION: Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope. {ECO:0000269|PubMed:23372012}. MISCELLANEOUS: There is a partial copy of the N-terminus (positions 1-343) of ycf1 in the inverted repeat (ycf1-A, BAA84433).,MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07739) is not demonstrated. 213728,23177,29962 Protein TIC 214 (Translocon at the inner envelope membrane of chloroplasts 214) (AtTIC214),Uncharacterized mitochondrial protein AtMg00370 (ORF199),Ycf1 domain protein chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; protein transporter activity [GO:0008565],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966],integral component of membrane [GO:0016021] locus:504954520; ATCG01000ATCG01130;,AT2G07739ATMG00370; Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it may have a function which is probably not related to photosynthesis NA NA NA NA NA NA NA ENOG411E29P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0380800 protein Q8LIU0 Q8LIU0_ORYSJ Os01g0380800 Os01g0380800 B1096D03.23 OsJ_01857 OSNPB_010380800 ENOG411E29Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E29N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Os08g0151900 protein (Fragment) A0A0P0XCB9 A0A0P0XCB9_ORYSJ Os08g0151900 OSNPB_080151900 ENOG411E29M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit RING-type E3 ubiquitin transferase (EC 2.3.2.27),Os12g0277000 protein (Fragment) Q2QU09,A0A0P0Y8Y7 Q2QU09_ORYSJ,A0A0P0Y8Y7_ORYSJ Os12g0277000 LOC_Os12g17880 Os12g0277000 OsJ_17697 OSNPB_120277000,Os12g0277000 OSNPB_120277000 ENOG411E29J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Expressed protein (Os12g0106300 protein) (cDNA clone:001-032-H01, full insert sequence),Expressed protein (Os11g0107000 protein) (cDNA clone:J013032I12, full insert sequence) Q2QYU2,Q2RBL8 Q2QYU2_ORYSJ,Q2RBL8_ORYSJ Os12g0106300 LOC_Os12g01560 Os12g0106300 OsJ_34935 OSNPB_120106300,Os11g0107000 LOC_Os11g01570 Os11g0107000 OsJ_32659 OSNPB_110107000 ENOG411E29K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF303) NA NA NA NA NA NA NA ENOG411E29H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gp_dh_N NA NA NA NA NA NA NA ENOG411E29I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: solute carrier family 11 (proton-coupled divalent metal ion transporters) member NA NA NA NA NA NA NA ENOG411E29F PDX12 Q9ZNR6 PDX12_ARATH Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 (AtPDX1.2) (AtPDX1;3) FUNCTION: The protein has no function in the formation of pyridoxal 5'-phosphate. {ECO:0000269|PubMed:17468224}. MISCELLANEOUS: Unlike PDX1.1 or PDX1.3, PDX1.2 is unable to interact with PDX2 and restore prototrophy in yeast snz1 mutants. ARA:GQT-784-MONOMER; 33836 Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 (AtPDX1.2) (AtPDX1;3) cytosol [GO:0005829]; catalytic activity [GO:0003824]; protein heterodimerization activity [GO:0046982]; pyridoxal phosphate biosynthetic process [GO:0042823] TISSUE SPECIFICITY: Expressed in callus tissues, flowers and roots. Weakly expressed in leaves and stems. {ECO:0000269|PubMed:16766694, ECO:0000269|Ref.1}. locus:2093427; AT3G16050 biosynthesis protein NA NA NA NA NA NA NA ENOG411E29G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0527300 protein) (cDNA clone:J023067E11, full insert sequence),Os05g0535200 protein,Os09g0500100 protein,Os09g0503700 protein,F-box domain containing protein, expressed (Os03g0217200 protein),Expressed protein (Os03g0218200 protein) (cDNA clone:J033075D05, full insert sequence),Os02g0729350 protein (Fragment),Os05g0535300 protein (Fragment),Os05g0532300 protein,Os09g0502900 protein,Os01g0946850 protein (Fragment),Os05g0538250 protein,Os05g0531800 protein,Os09g0502800 protein (Fragment),Os02g0729251 protein Q2R3C5,Q6L5J2,Q0J0S9,Q0J0N5,Q10PY1,Q10PX1,A0A0P0VPH1,A0A0P0WQ86,A0A0P0WQA5,A0A0P0XQ93,A0A0P0VCW3,A0A0P0WQD9,A0A0P0WPL1,A0A0P0XQ54,A0A0P0VP60 Q2R3C5_ORYSJ,Q6L5J2_ORYSJ,Q0J0S9_ORYSJ,Q0J0N5_ORYSJ,Q10PY1_ORYSJ,Q10PX1_ORYSJ,A0A0P0VPH1_ORYSJ,A0A0P0WQ86_ORYSJ,A0A0P0WQA5_ORYSJ,A0A0P0XQ93_ORYSJ,A0A0P0VCW3_ORYSJ,A0A0P0WQD9_ORYSJ,A0A0P0WPL1_ORYSJ,A0A0P0XQ54_ORYSJ,A0A0P0VP60_ORYSJ Os11g0527300 LOC_Os11g32410 Os11g0527300 OSNPB_110527300,Os05g0535200 OJ1741_B01.2 OSNPB_050535200,Os09g0500100 OSNPB_090500100,Os09g0503700 OSNPB_090503700,LOC_Os03g11790 Os03g0217200 OSNPB_030217200,Os03g0218200 LOC_Os03g11874 OSNPB_030218200,Os02g0729350 OSNPB_020729350,Os05g0535300 OSNPB_050535300,Os05g0532300 OSNPB_050532300,Os09g0502900 OSNPB_090502900,Os01g0946850 OSNPB_010946850,Os05g0538250 OSNPB_050538250,Os05g0531800 OSNPB_050531800,Os09g0502800 OSNPB_090502800,Os02g0729251 OSNPB_020729251 ENOG411E29D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain Os08g0227400 protein (Fragment),Os08g0227500 protein A0A0P0XD24,A0A0P0XDE4 A0A0P0XD24_ORYSJ,A0A0P0XDE4_ORYSJ Os08g0227400 OSNPB_080227400,Os08g0227500 OSNPB_080227500 ENOG411E29E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) Os05g0434800 protein A0A0P0WMQ3 A0A0P0WMQ3_ORYSJ Os05g0434800 OSNPB_050434800 ENOG411E29B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os03g0790500 protein (cDNA clone:002-124-C10, full insert sequence) (prMC3, putative, expressed) Q10C96 Q10C96_ORYSJ LOC_Os03g57640 Os03g0790500 OSNPB_030790500 ENOG411E29C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0156100 protein,OSJNBb0028M18.2 protein (Os04g0161400 protein),Os04g0156050 protein,Os04g0160600 protein (Fragment),Os04g0154401 protein,Os04g0155000 protein,Os04g0155600 protein A3AQR3,Q7XSN5,A0A0P0W6T4,A0A0P0W6Y5,A0A0P0W6M4,A0A0P0W6I4,A0A0P0W6Q7 A3AQR3_ORYSJ,Q7XSN5_ORYSJ,A0A0P0W6T4_ORYSJ,A0A0P0W6Y5_ORYSJ,A0A0P0W6M4_ORYSJ,A0A0P0W6I4_ORYSJ,A0A0P0W6Q7_ORYSJ Os04g0156100 OsJ_13718 OSNPB_040156100,Os04g0161400 OsJ_13753 OSJNBb0028M18.2 OSNPB_040161400,Os04g0156050 OSNPB_040156050,Os04g0160600 OSNPB_040160600,Os04g0154401 OSNPB_040154401,Os04g0155000 OSNPB_040155000,Os04g0155600 OSNPB_040155600 ENOG411E29A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os12g0238900 protein (Fragment) Q0IP76 Q0IP76_ORYSJ Os12g0238900 Os12g0238900 OSNPB_120238900 ENOG411E298 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0311800 protein,Os11g0246300 protein A0A0P0VI35,A0A0P0Y0T8 A0A0P0VI35_ORYSJ,A0A0P0Y0T8_ORYSJ Os02g0311800 OSNPB_020311800,Os11g0246300 OSNPB_110246300 ENOG411E299 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os02g0136900 protein (Putative leucine-rich repeat transmembrane protein kinase 2) (cDNA clone:J013122N06, full insert sequence) Q6YXY8 Q6YXY8_ORYSJ Os02g0136900 Os02g0136900 OsJ_05299 OSJNBa0026E05.1 OSJNBa0081C13.25 OSNPB_020136900 ENOG411E296 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats wheat rice and barley. They can account for up to 70 by weight of the wall Mixed-linked glucan synthase 2 (EC 2.4.1.-) (1,3;1,4-beta-D-glucan synthase 2) (Cellulose synthase-like protein F2) (OsCslF2),Mixed-linked glucan synthase 4 (EC 2.4.1.-) (1,3;1,4-beta-D-glucan synthase 4) (Cellulose synthase-like protein F4) (OsCslF4),Putative mixed-linked glucan synthase 1 (EC 2.4.1.-) (1,3/1,4-beta D-glucan synthase 1) (Cellulose synthase-like protein F1) (OsCslF1),Os07g0552400 protein,Os07g0553000 protein (Fragment),Os07g0552800 protein (Fragment),Os06g0213551 protein,Os07g0553300 protein Q84S11,Q6ZF86,Q6ZF89,B9FXU2,A0A0P0X843,A0A0P0X7S3,A0A0P0WU20,A0A0P0X7B8 CSLF2_ORYSJ,CSLF4_ORYSJ,CSLF1_ORYSJ,B9FXU2_ORYSJ,A0A0P0X843_ORYSJ,A0A0P0X7S3_ORYSJ,A0A0P0WU20_ORYSJ,A0A0P0X7B8_ORYSJ CSLF2 Os07g0552800 LOC_Os07g36690 OSJNBb0041B22.126 P0013G11.2,CSLF4 Os07g0553300 LOC_Os07g36740 P0013G11.11,CSFL1 Os07g0553000 LOC_Os07g36700 P0013G11.6,Os07g0552400 OsJ_24681 OSNPB_070552400,Os07g0553000 OSNPB_070553000,Os07g0552800 OSNPB_070552800,Os06g0213551 OSNPB_060213551,Os07g0553300 OSNPB_070553300 FUNCTION: Catalyzes both beta-1,3 and beta-1,4 glycosidic linkage on beta-D-glucan. Essential for (1,3;1,4)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats, wheat, rice and barley. They can account for up to 70% by weight of the wall. {ECO:0000269|PubMed:16574868}.,FUNCTION: May catalyze both beta-1,3 and beta-1,4 glycosidic linkage on beta-D-glucan. Essential for (1,3;1,4)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats, wheat, rice and barley. They can account for up to 70% by weight of the wall (By similarity). {ECO:0000250}. ENOG411E297 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FACT complex subunit (SPT16/CDC68) Metallopeptidase family M24 containing protein, expressed (Os12g0446500 protein) Q2QRX9 Q2QRX9_ORYSJ Os12g0446500 LOC_Os12g26030 OSNPB_120446500 ENOG411E294 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os01g0958500 protein (RNA recognition motif (RRM)-containing protein-like) (cDNA clone:J023150K08, full insert sequence) Q5JK61 Q5JK61_ORYSJ Os01g0958500 OJ1294_F06.31 OSNPB_010958500 P0401G10.5 ENOG411E295 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase Os08g0550500 protein,Os09g0544400 protein Q6Z3I3,A0A0P0XQK1 Q6Z3I3_ORYSJ,A0A0P0XQK1_ORYSJ Os08g0550500 OJ1479_B11.25 OSJNBb0011H15.1 OSNPB_080550500,Os09g0544400 OSNPB_090544400 ENOG411E292 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C Os02g0128400 protein (Putative heat shock protein 40),Os07g0513600 protein Q6Z6Z5,A0A0P0X6T4 Q6Z6Z5_ORYSJ,A0A0P0X6T4_ORYSJ Os02g0128400 OsJ_05227 OSNPB_020128400 P0576F08.7,Os07g0513600 OSNPB_070513600 ENOG411E293 WRKY7 Q9STX0,A0A1P8B8K6 WRKY7_ARATH,A0A1P8B8K6_ARATH Probable WRKY transcription factor 7 (WRKY DNA-binding protein 7),WRKY DNA-binding protein 7 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 38349,32474 Probable WRKY transcription factor 7 (WRKY DNA-binding protein 7),WRKY DNA-binding protein 7 nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. locus:2135967; AT4G24240 WRKY transcription factor NA NA NA NA NA NA NA ENOG411E290 CML25 Q9FYK2 CML25_ARATH Probable calcium-binding protein CML25 (Calmodulin-like protein 25) FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 20301 Probable calcium-binding protein CML25 (Calmodulin-like protein 25) cytoplasm [GO:0005737]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; response to cold [GO:0009409]; root hair elongation [GO:0048767] locus:2024046; AT1G24620 calcium-binding NA NA NA NA NA NA NA ENOG411E291 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP deaminase-like NA NA NA NA NA NA NA ENOG411EFM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EBEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EBEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-galactosidase NA NA NA NA NA NA NA ENOG411E886 F11M15.26 Q9SYE2 Q9SYE2_ARATH At1g51400/F5D21_10 (F11M15.26 protein) (Photosystem II 5 kD protein) (Uncharacterized protein F5D21.10) 11361 At1g51400/F5D21_10 (F11M15.26 protein) (Photosystem II 5 kD protein) (Uncharacterized protein F5D21.10) chloroplast thylakoid membrane [GO:0009535]; protein domain specific binding [GO:0019904]; response to ozone [GO:0010193]; response to UV-B [GO:0010224]; response to wounding [GO:0009611] locus:2033915; AT1G51400 Photosystem II 5 NA NA NA NA NA NA NA ENOG411E885 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0555000 protein,Os05g0554800 protein Q6I622,Q6I623 Q6I622_ORYSJ,Q6I623_ORYSJ Os05g0555000 OJ1263_E10.14 OSNPB_050555000,Os05g0554800 OJ1263_E10.13 OsJ_19486 OSNPB_050554800 ENOG411E884 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411E883 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0151750 protein),Os11g0152025 protein Q2QXM0,A0A0N7KSG1 Q2QXM0_ORYSJ,A0A0N7KSG1_ORYSJ Os12g0151750 LOC_Os12g05580 OSNPB_120151750,Os11g0152025 OSNPB_110152025 ENOG411E88J F4HXC5 F4HXC5_ARATH F-box protein 28869 F-box protein locus:5019474674; AT1G74875 Inherit from KOG: replication protein NA NA NA NA NA NA NA ENOG411E88I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0705400 protein,Os06g0705400 protein (cDNA clone:001-105-F12, full insert sequence) B9FQT7,Q5Z8V0 B9FQT7_ORYSJ,Q5Z8V0_ORYSJ Os06g0705400 OsJ_22570 OSNPB_060705400,P0018H04.13-1 P0621D05.1-1 Os06g0705400 OSNPB_060705400 ENOG411E7MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os08g0481175 protein,Os04g0172440 protein,Os11g0588932 protein,Os03g0100250 protein,Os08g0481151 protein,Os12g0269333 protein A0A0P0XH55,A0A0P0W782,A0A0P0Y487,A0A0P0VRV1,A0A0P0XGV8,A0A0P0Y8T5 A0A0P0XH55_ORYSJ,A0A0P0W782_ORYSJ,A0A0P0Y487_ORYSJ,A0A0P0VRV1_ORYSJ,A0A0P0XGV8_ORYSJ,A0A0P0Y8T5_ORYSJ Os08g0481175 OSNPB_080481175,Os04g0172440 OSNPB_040172440,Os11g0588932 OSNPB_110588932,Os03g0100250 OSNPB_030100250,Os08g0481151 OSNPB_080481151,Os12g0269333 OSNPB_120269333 ENOG411E7MC F16L2_230,MMN10.9 Q9LZT1,F4JXD2 Q9LZT1_ARATH,F4JXD2_ARATH At3g46020 (RNA binding protein-like) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 11423,17703 At3g46020 (RNA binding protein-like) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2077137;,locus:2168133; AT3G46020,AT5G59860 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os01g0502800 protein (Fragment) A0A0N7KD12 A0A0N7KD12_ORYSJ Os01g0502800 OSNPB_010502800 ENOG411E88X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os02g0564600 protein B9F0L9 B9F0L9_ORYSJ Os02g0564600 Os02g0564600 OsJ_07172 OSNPB_020564600 ENOG411E7MF F13M14.3 Q9S732 Q9S732_ARATH HSP20-like chaperones superfamily protein (T7M13.24 protein) (Uncharacterized protein F13M14.3) 54196 HSP20-like chaperones superfamily protein (T7M13.24 protein) (Uncharacterized protein F13M14.3) integral component of membrane [GO:0016021] locus:2075805; AT3G10680 Inherit from COG: response to heat NA NA NA NA NA NA NA ENOG411E7MN Q6NLF7,Q3ECK0 Q6NLF7_ARATH,Q3ECK0_ARATH At1g62790 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At1g62790),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 15711,15640 At1g62790 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Uncharacterized protein At1g62790),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein anchored component of membrane [GO:0031225] locus:2026257; AT1G62790 lipid transfer-like protein Os06g0686400 protein (cDNA clone:001-112-D11, full insert sequence) (cDNA clone:J023026H03, full insert sequence),Os10g0191100 protein Q653H4,A0A0P0XSJ9 Q653H4_ORYSJ,A0A0P0XSJ9_ORYSJ P0623A10.9-1 P0009H10.51-1 Os06g0686400 OSNPB_060686400,Os10g0191100 OSNPB_100191100 ENOG411E7MM Q1G3V6,Q0WR17,B3H6Q0,B3H715 Q1G3V6_ARATH,Q0WR17_ARATH,B3H6Q0_ARATH,B3H715_ARATH AT1G10657 protein (Transmembrane protein),Transmembrane protein 11989,14659,11838,14508 AT1G10657 protein (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:4010713425; AT1G10657 Plant protein 1589 of unknown function (A_thal_3526) NA NA NA NA NA NA NA ENOG411E7M3 Q9CAI4 Q9CAI4_ARATH At1g72690 (Neurofilament heavy protein) (Uncharacterized protein F28P22.12) 10025 At1g72690 (Neurofilament heavy protein) (Uncharacterized protein F28P22.12) locus:2030195; AT1G72690 NA NA NA NA NA NA NA NA ENOG411E7M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin-dependent protein kinase inhibitor EL2 Q10SY2 EL2_ORYSJ EL2 Os03g0107700 LOC_Os03g01740 OsJ_09102 FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. May coordinate biotic and abiotic stress perception and cell cycle progression. Inhibits CDKs activity in vitro. {ECO:0000269|PubMed:17599908}. ENOG411E7M7 Q1PE84 Q1PE84_ARATH RNA-binding protein 28553 RNA-binding protein locus:2119510; AT4G13690 NA NA NA NA NA NA NA NA ENOG411E7M6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0182100 protein (Fragment) Q0IU66 Q0IU66_ORYSJ Os11g0182100 OSNPB_110182100 ENOG411E7M4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Expressed protein (Os03g0400700 protein) Q93VJ3 Q93VJ3_ORYSJ Os03g0400700 Os03g28260 OsJ_11175 OSJNBa0015K03.5 OSNPB_030400700 ENOG411EJHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0621600 protein) (cDNA clone:002-131-A12, full insert sequence) Q2QM11 Q2QM11_ORYSJ Os12g0621600 LOC_Os12g42670 Os12g0621600 OSNPB_120621600 ENOG411EDY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET NA NA NA NA NA NA NA ENOG411EDY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411EJH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWP-RK domain NA NA NA NA NA NA NA ENOG411EJH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: (ABC) transporter NA NA NA NA NA NA NA ENOG411EIGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0101400 protein Q69K24 Q69K24_ORYSJ Os09g0101400 OsJ_28334 OSJNBa0066B16.29 OSNPB_090101400 ENOG411EIGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF894 NA NA NA NA NA NA NA ENOG411EIGB F3A4.100 Q9SN16,A0A1P8BEG4 Q9SN16_ARATH,A0A1P8BEG4_ARATH Serine protease inhibitor, potato inhibitor I-type family protein (Uncharacterized protein F3A4.100),Inhibitor of trypsin/hageman factor-like protein 10444,7459 Serine protease inhibitor, potato inhibitor I-type family protein (Uncharacterized protein F3A4.100),Inhibitor of trypsin/hageman factor-like protein peptidase activity [GO:0008233]; serine-type endopeptidase inhibitor activity [GO:0004867]; defense response [GO:0006952]; response to wounding [GO:0009611],serine-type endopeptidase inhibitor activity [GO:0004867]; response to wounding [GO:0009611] locus:2083058; AT3G50020 serine protease inhibitor potato inhibitor I-type family protein NA NA NA NA NA NA NA ENOG411EIG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIG9 Q9LZA7 Q9LZA7_ARATH Transmembrane protein (Uncharacterized protein F8F6_240) 8584 Transmembrane protein (Uncharacterized protein F8F6_240) integral component of membrane [GO:0016021] locus:2150630; AT5G04030 NA NA NA NA NA NA NA NA ENOG411EIG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0607000 protein) (cDNA clone:J033071G16, full insert sequence),Os11g0606600 protein Q2R1F5,Q0IRQ0 Q2R1F5_ORYSJ,Q0IRQ0_ORYSJ LOC_Os11g39350 Os11g0607000 OsJ_26575 OSNPB_110607000,Os11g0606600 Os11g0606600 OSNPB_110606600 ENOG411E7JI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0553800 protein Q6ZF81 Q6ZF81_ORYSJ P0013G11.21 Os07g0553800 OSNPB_070553800 ENOG411DS7X UGT87A2,UGT87A1 O64733,O64732,A0A1P8AXZ2 U87A2_ARATH,U87A1_ARATH,A0A1P8AXZ2_ARATH UDP-glycosyltransferase 87A2 (EC 2.4.1.-),UDP-glycosyltransferase 87A1 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein ARA:AT2G30150-MONOMER; 2.4.1.- 51728,49611,51349 UDP-glycosyltransferase 87A2 (EC 2.4.1.-),UDP-glycosyltransferase 87A1 (EC 2.4.1.-),UDP-Glycosyltransferase superfamily protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152]; regulation of flower development [GO:0009909],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2060832;,locus:2060817; AT2G30140,AT2G30150 UDP-Glycosyltransferase Os10g0366901 protein,Glycosyltransferase (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) (Fragment) A3C421,Q8LR92,A0A0P0WP39,A0A0P0V9J2 A3C421_ORYSJ,Q8LR92_ORYSJ,A0A0P0WP39_ORYSJ,A0A0P0V9J2_ORYSJ Os10g0366901 OsJ_31251 OSNPB_100366901,Os01g0805400 Os01g0805400 OsJ_03798 OSNPB_010805400 P0034E02.56,Os05g0493600 OSNPB_050493600,Os01g0805500 OSNPB_010805500 ENOG411DS7S Q9LZ30 Q9LZ30_ARATH Enhancer of polycomb-like protein 87754 Enhancer of polycomb-like protein Piccolo NuA4 histone acetyltransferase complex [GO:0032777]; histone acetylation [GO:0016573]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] locus:2180218; AT5G04670 Enhancer of polycomb-like Enhancer of polycomb-like protein Q6YUA2 Q6YUA2_ORYSJ Os02g0100200 B1370C05.1 OsJ_04978 OSJNOa183H18.3 OSNPB_020100200 ENOG411DS7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TS-N domain-containing protein NA NA NA NA NA NA NA ENOG411DS7D Q9C5K6 Q9C5K6_ARATH tRNA pseudouridine synthase (EC 5.4.99.-) ARA:AT1G34150-MONOMER; 5.4.99.- 50979 tRNA pseudouridine synthase (EC 5.4.99.-) cytoplasm [GO:0005737]; nucleus [GO:0005634]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; mRNA pseudouridine synthesis [GO:1990481]; tRNA pseudouridine synthesis [GO:0031119] locus:2009021; AT1G34150 tRNA pseudouridine synthase tRNA pseudouridine synthase (EC 5.4.99.-) (Fragment) A0A0P0VYX7 A0A0P0VYX7_ORYSJ Os03g0381100 OSNPB_030381100 ENOG411EHU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L5 NA NA NA NA NA NA NA ENOG411E5IY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor NA NA NA NA NA NA NA ENOG411DS76 CYP22 Q9ZVJ4 CYP22_ARATH Peptidyl-prolyl cis-trans isomerase CYP22 (PPIase CYP22) (EC 5.2.1.8) (Cyclophilin of 22 kDa) (Cyclophilin-22) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. R-ATH-72163; 5.2.1.8 21492 Peptidyl-prolyl cis-trans isomerase CYP22 (PPIase CYP22) (EC 5.2.1.8) (Cyclophilin of 22 kDa) (Cyclophilin-22) cytosol [GO:0005829]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2064153; AT2G38730 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q7XZG9 Q7XZG9_ORYSJ LOC_Os03g59700 Os03g0811600 OSJNBb0033J23.12 OSNPB_030811600 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DUEK AT4G38500.1 Q94AV6 Q94AV6_ARATH At4g38500/F20M13_60 (Sept9) (Sept9 (DUF616)) 57762 At4g38500/F20M13_60 (Sept9) (Sept9 (DUF616)) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2121194; AT4G38500 Protein of unknown function (DUF616) Os06g0724300 protein (cDNA clone:001-023-H04, full insert sequence) Q5Z993 Q5Z993_ORYSJ Os06g0724300 Os06g0724300 OsJ_22695 OSNPB_060724300 P0535F09.34 P0548E04.1 ENOG411DUEM DRP4A,DRP4C Q9ZP56,Q9ZP55 DRP4A_ARATH,DRP4C_ARATH Putative dynamin-related protein 4A,Dynamin-related protein 4C FUNCTION: Putative microtubule-associated force-producing protein, able to bind and hydrolyze GTP. {ECO:0000250}. ARA:GQT-698-MONOMER;,ARA:AT1G60500-MONOMER; 32883,74598 Putative dynamin-related protein 4A,Dynamin-related protein 4C cytoplasm [GO:0005737]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; mitochondrial fission [GO:0000266],cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; microtubule binding [GO:0008017]; mitochondrial fission [GO:0000266] locus:2036601;,locus:2036566; AT1G60530,AT1G60500 Dynamin family Os04g0129900 protein (Fragment) A0A0P0W699 A0A0P0W699_ORYSJ Os04g0129900 OSNPB_040129900 ENOG411EHV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EETG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EETE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integrase core domain NA NA NA NA NA NA NA ENOG411EETB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Harpin-induced protein-related-like (Os02g0507900 protein) Q6K2G8 Q6K2G8_ORYSJ Os02g0507900 OsJ_06860 OSJNBa0052M16.11 OSNPB_020507900 P0047E05.38 ENOG411EETC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0246700 protein A0A0P0WV16 A0A0P0WV16_ORYSJ Os06g0246700 OSNPB_060246700 ENOG411EETA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EETN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EETM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0590800 protein,Os01g0590850 protein A0A0P0V4N9,A0A0P0V4Q7 A0A0P0V4N9_ORYSJ,A0A0P0V4Q7_ORYSJ Os01g0590800 OSNPB_010590800,Os01g0590850 OSNPB_010590850 ENOG411EETJ ATG8H Q8S925 ATG8H_ARATH Autophagy-related protein 8h (Autophagy-related ubiquitin-like modifier ATG8h) (AtAPG8h) (Protein autophagy 8h) FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. R-ATH-1632852;R-ATH-8854214; 13884 Autophagy-related protein 8h (Autophagy-related ubiquitin-like modifier ATG8h) (AtAPG8h) (Protein autophagy 8h) autophagosome membrane [GO:0000421]; cytoplasmic vesicle [GO:0031410]; microtubule [GO:0005874]; autophagy [GO:0006914]; cellular response to nitrogen starvation [GO:0006995]; protein transport [GO:0015031] TISSUE SPECIFICITY: Contitutively expressed. {ECO:0000269|PubMed:15494556}. locus:2081051; AT3G06420 Pfam:MAP1_LC3 NA NA NA NA NA NA NA ENOG411EETK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain transcription factor superfamily protein NA NA NA NA NA NA NA ENOG411EETI F15B8.170 O64798,O80795,Q9SVX8,Q9S9J9 Y1747_ARATH,Y1652_ARATH,Q9SVX8_ARATH,Q9S9J9_ARATH Inactive serine/threonine-protein kinase At1g67470,Probable inactive receptor-like protein kinase At1g65250,At3g57640 (Protein kinase superfamily protein) (Uncharacterized protein F15B8.170),Protein kinase superfamily protein (T23K8.10 protein) (Uncharacterized protein At1g65190) 45195,42728,41127,45922 Inactive serine/threonine-protein kinase At1g67470,Probable inactive receptor-like protein kinase At1g65250,At3g57640 (Protein kinase superfamily protein) (Uncharacterized protein F15B8.170),Protein kinase superfamily protein (T23K8.10 protein) (Uncharacterized protein At1g65190) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2008818;,locus:2206235;,locus:2076686;,locus:2200375; AT1G67470,AT1G65250,AT3G57640,AT1G65190 Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EETV PRA1C,PRA1.C Q1G3K7,A0A1P8B7W4 PRA1C_ARATH,A0A1P8B7W4_ARATH PRA1 family protein C (AtPRA1.C),PRA1 family protein FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}.,FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. 14210,21008 PRA1 family protein C (AtPRA1.C),PRA1 family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:1009023387; AT4G29658 PRA1 family protein NA NA NA NA NA NA NA ENOG411EETT GDU1 O81775 GDU1_ARATH Protein GLUTAMINE DUMPER 1 FUNCTION: Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Required the interaction with the RING-type E3 ubiquitin-protein ligase LOG2 to fulfill its function. Plays a role in the Gln export at hydathodes, at xylem parenchyma into xylem sap and from mesophyll into leaf apoplasm. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction. {ECO:0000269|PubMed:15208395, ECO:0000269|PubMed:17157837, ECO:0000269|PubMed:19704691, ECO:0000269|PubMed:20018597, ECO:0000269|PubMed:20042021, ECO:0000269|PubMed:22291198, ECO:0000269|Ref.9}. MISCELLANEOUS: Overexpression of GLUTAMINE DUMPER 1 leads to free amino acid levels accumulation, plant size decrease, hypersecretion of glutamine from hydathodes and to a full resistance to geminivirus infection (Ref.9, PubMed:15208395, PubMed:20042021, PubMed:20018597). 17254 Protein GLUTAMINE DUMPER 1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; glutamine secretion [GO:0010585]; regulation of amino acid export [GO:0080143]; regulation of cellular amino acid metabolic process [GO:0006521] TISSUE SPECIFICITY: Expressed in the vascular tissues and in hydathodes. Expressed in the phloem and xylem (at the protein level). {ECO:0000269|PubMed:15208395, ECO:0000269|PubMed:20018597, ECO:0000269|Ref.9}. locus:2124894; AT4G31730 Inherit from euNOG: glutamine dumper NA NA NA NA NA NA NA ENOG411EETU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain NA NA NA NA NA NA NA ENOG411EETR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Papain family cysteine protease NA NA NA NA NA NA NA ENOG411EETS MCI2.3 Q9FII6 Q9FII6_ARATH C2H2-like zinc finger protein (Uncharacterized protein At5g61470) 34350 C2H2-like zinc finger protein (Uncharacterized protein At5g61470) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2161168; AT5G61470 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EETP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EETQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EETY MRA19.16 F4KEM2 F4KEM2_ARATH Ubiquitin domain-containing protein 13410 Ubiquitin domain-containing protein ubiquitin binding [GO:0043130] locus:2171933; AT5G45740 Inherit from KOG: Ubiquitin domain containing NA NA NA NA NA NA NA ENOG411EET6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 20 (OsMADS20) Q2QQA3 MAD20_ORYSJ MADS20 Os12g0501700 LOC_Os12g31748 FUNCTION: Probable transcription factor. ENOG411EET7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EET5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EET2 MXF12.17 Q9FL88,F4KD19,F4KD14 Q9FL88_ARATH,F4KD19_ARATH,F4KD14_ARATH Myb-like protein Q 22093,16691,16503 Myb-like protein Q locus:2157240;,locus:2157210;,locus:2177177; AT5G39200,AT5G39170,AT5G39140 NA NA NA NA NA NA NA NA ENOG411EET3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EET0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EET9 Q5BPW2,F4HQ38 Q5BPW2_ARATH,F4HQ38_ARATH Homeobox Hox-B3-like protein 25133,21297 Homeobox Hox-B3-like protein DNA binding [GO:0003677] locus:2824992; AT1G67035 NA NA NA NA NA NA NA NA ENOG411EHH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1415) NA NA NA NA NA NA NA ENOG411EHH1 ; P92520 M820_ARATH Uncharacterized mitochondrial protein AtMg00820 (ORF170) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07683) is not demonstrated. 19510 Uncharacterized mitochondrial protein AtMg00820 (ORF170) mitochondrion [GO:0005739] locus:504954565; AT2G07683ATMG00820; Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EHH0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: WD repeat domain 36 NA NA NA NA NA NA NA ENOG411EHHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: glycine cleavage system transcriptional repressor NA NA NA NA NA NA NA ENOG411EHHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHHD Q3EB02 Q3EB02_ARATH Anther-specific protein agp1-like protein (At3g26110) 12655 Anther-specific protein agp1-like protein (At3g26110) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2092195; AT3G26110 NA NA NA NA NA NA NA NA ENOG411EHHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein mRNA source RefSeq DNA_predicted NA NA NA NA NA NA NA ENOG411DT8E Q9LKB3 Q9LKB3_ARATH At3g14910 (Rab3 GTPase-activating protein non-catalytic subunit) R-ATH-6811436;R-ATH-8876198; 50296 At3g14910 (Rab3 GTPase-activating protein non-catalytic subunit) intracellular [GO:0005622]; Rab guanyl-nucleotide exchange factor activity [GO:0017112]; intracellular protein transport [GO:0006886]; regulation of GTPase activity [GO:0043087] locus:2086390; AT3G14910 Rab3 gtpase-activating protein non-catalytic Os09g0315800 protein (Rab3-GAP regulatory domain-like),Os05g0581100 protein Q69LW2,A0A0P0WQC8 Q69LW2_ORYSJ,A0A0P0WQC8_ORYSJ Os09g0315800 Os09g0315800 OsJ_28835 OSJNBa0057D11.25-1 OSNPB_090315800,Os05g0581100 OSNPB_050581100 ENOG411DT8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant calmodulin-binding domain Os04g0284900 protein (cDNA clone:J023136A15, full insert sequence) B7EL48 B7EL48_ORYSJ Os04g0284900 OSNPB_040284900 ENOG411DT8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Heavy metal-associated domain containing protein, expressed (Os03g0152000 protein) Q10RN8 Q10RN8_ORYSJ Os03g0152000 LOC_Os03g05750 Os03g0152000 OSNPB_030152000 ENOG411DT8A PAP3 O82291 PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic (AtPap3) (Fibrillin-2) (Plastoglobulin 40) (AtPGL40) FUNCTION: Probably involved in light/cold stress-related jasmonate (JA) biosynthesis. {ECO:0000269|PubMed:19906042}. MISCELLANEOUS: Simultaneous down-regulation of PAP1, PAP2 and PAP3 leads to impaired long-term acclimation to environmental constraint, namely photooxidative stress imposed by high light combined with cold. {ECO:0000305|PubMed:19906042}. 40505 Probable plastid-lipid-associated protein 3, chloroplastic (AtPap3) (Fibrillin-2) (Plastoglobulin 40) (AtPGL40) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536]; plastoglobule [GO:0010287]; thylakoid [GO:0009579] locus:2062497; AT2G35490 plastid-lipid-associated protein 3 Probable plastid-lipid-associated protein 3, chloroplastic Q7XBW5 PAP3_ORYSJ PAP3 Os10g0575700 LOC_Os10g42500 OSJNBa0027L23.3 ENOG411DT8C CLPB1,CLPB2,HSP101 P42730,F4JVJ1,A0A1P8AN20,A0A1P8B5U7 CLPB1_ARATH,CLPB2_ARATH,A0A1P8AN20_ARATH,A0A1P8B5U7_ARATH Chaperone protein ClpB1 (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 1) (Casein lytic proteinase B1) (Heat shock protein 101) (Protein DEFECTIVE IN LONG-TERM ACQUIRED THERMOTOLERANCE),Putative chaperone protein ClpB2, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 2) (Casein lytic proteinase B2),Heat shock protein 101,Chaperone ClpB1-like protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but germinating seeds have greatly reduced basal thermotolerance and are unable to acquire thermotolerance (PubMed:10760305, PubMed:11489180). Faster degradation of HSA32 (at protein level) (PubMed:23439916). {ECO:0000269|PubMed:10760305, ECO:0000269|PubMed:11489180, ECO:0000269|PubMed:23439916}. Defective in acquired thermotolerance. Plant growth and development seed set and fertility and germination of harvested seeds are the same as wild type in the absence of stress (normal growth conditions).,Defective thermotolerance. Plants treated at 38C are not able to acclimate to 45C temperature. Reduced acclimation to high temperature-E. Vierling-2001 FUNCTION: Molecular chaperone that plays an important role in thermotolerance. Together with HSA32, required for long-term acquired thermotolerance (LAT) in plants and naturally high basal thermotolerance observed in germinating seedlings. {ECO:0000269|PubMed:10760238, ECO:0000269|PubMed:10760305, ECO:0000269|PubMed:11489180, ECO:0000269|PubMed:15659638, ECO:0000269|PubMed:17144892, ECO:0000269|PubMed:23439916, ECO:0000269|PubMed:7866032}. MISCELLANEOUS: Over-expression of HSP101 partially reverse the sensitivity of 14 day-old seedling to heat stress. 101295,68898,90779,18262 Chaperone protein ClpB1 (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 1) (Casein lytic proteinase B1) (Heat shock protein 101) (Protein DEFECTIVE IN LONG-TERM ACQUIRED THERMOTOLERANCE),Putative chaperone protein ClpB2, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 2) (Casein lytic proteinase B2),Heat shock protein 101,Chaperone ClpB1-like protein chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; positive regulation of translation [GO:0045727]; protein metabolic process [GO:0019538]; protein unfolding [GO:0043335]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542],ATP binding [GO:0005524]; protein metabolic process [GO:0019538],ATP binding [GO:0005524] DEVELOPMENTAL STAGE: Starts to accumulate in maturing seeds 15 days after pollination and decreases rapidly during seed germination. {ECO:0000269|PubMed:10760238, ECO:0000269|PubMed:11489180}. locus:2019667;,locus:2130070; AT1G74310,AT4G14670 Heat Shock Protein Chaperone protein ClpB1 (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 1) (Casein lytic proteinase B1) (Heat shock protein 101),Os05g0519700 protein (Fragment) Q6F2Y7,A0A0P0WPV2 CLPB1_ORYSJ,A0A0P0WPV2_ORYSJ CLPB1 HSP101 Os05g0519700 LOC_Os05g44340 OsJ_19232 P0483D07.3 P0599F04.13,Os05g0519700 OSNPB_050519700 FUNCTION: Molecular chaperone involved in heat stress response. May play a role in resolubilization of protein aggregates after heat shock. {ECO:0000269|PubMed:12650620}. ENOG411DT8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mRNA capping enzyme Os12g0193200 protein (cDNA clone:J023082E18, full insert sequence) (mRNA capping enzyme, C-terminal domain containing protein, expressed),Os11g0217500 protein (cDNA clone:J023105K02, full insert sequence) Q2QWJ7,B7EQL6 Q2QWJ7_ORYSJ,B7EQL6_ORYSJ Os12g0193200 LOC_Os12g09120 Os12g0193200 OsJ_35498 OSNPB_120193200,Os11g0217500 OSNPB_110217500 ENOG411DT8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Carboxylesterase Probable isoprenylcysteine alpha-carbonyl methylesterase ICME (EC 3.1.1.n2) Q6L5F5 IMCE_ORYSJ IMCE Os05g0577200 LOC_Os05g50170 OJ1126_B10.7 FUNCTION: Catalyzes the demethylation of isoprenylcysteine methylesters. {ECO:0000250}. ENOG411DT8I F27B13.190,MJB24.2 Q9SZR5,Q9LVD7,O64557,A0A1P8B6U2,A0A1P8BE76,A0A1P8B1P2,F4JPG6 Q9SZR5_ARATH,Q9LVD7_ARATH,O64557_ARATH,A0A1P8B6U2_ARATH,A0A1P8BE76_ARATH,A0A1P8B1P2_ARATH,F4JPG6_ARATH Uncharacterized protein AT4g29950 (Uncharacterized protein F27B13.190) (Ypt/Rab-GAP domain of gyp1p superfamily protein),At5g57210/MJB24_2 (Microtubule-associated protein-like) (Ypt/Rab-GAP domain of gyp1p superfamily protein),Uncharacterized protein At2g19240 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein 93178,82865,94932,92202,67039,95549,78708 Uncharacterized protein AT4g29950 (Uncharacterized protein F27B13.190) (Ypt/Rab-GAP domain of gyp1p superfamily protein),At5g57210/MJB24_2 (Microtubule-associated protein-like) (Ypt/Rab-GAP domain of gyp1p superfamily protein),Uncharacterized protein At2g19240 (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2123859;,locus:2165625;,locus:2047600; AT4G29950,AT5G57210,AT2G19240 RabGAP TBC domain-containing protein Os06g0661700 protein (Putative microtubule-associated protein) (cDNA clone:J013105D20, full insert sequence),Os06g0661700 protein (Putative microtubule-associated protein) (cDNA clone:J013090G02, full insert sequence),Os08g0518100 protein (Putative microtubule-associated protein) (cDNA clone:J013074L23, full insert sequence),Os08g0518100 protein (Fragment) Q651U3,Q651U4,Q84Z87,A0A0P0XHW2 Q651U3_ORYSJ,Q651U4_ORYSJ,Q84Z87_ORYSJ,A0A0P0XHW2_ORYSJ Os06g0661700 OsJ_22246 OSJNBa0051O02.37-2 OSJNBb0065C04.4-2 OSNPB_060661700,Os06g0661700 Os06g0661700 OSJNBa0051O02.37-1 OSJNBb0065C04.4-1 OSNPB_060661700,P0700D12.119 Os08g0518100 OsJ_27942 OSNPB_080518100,Os08g0518100 OSNPB_080518100 ENOG411DT8J Q8L5Z4,A0A1P8BHB2 Q8L5Z4_ARATH,A0A1P8BHB2_ARATH At2g25870 (Haloacid dehalogenase-like hydrolase family protein) (Uncharacterized protein At2g25860) (Uncharacterized protein At2g25860:At2g25870),Uncharacterized protein (Fragment) FUNCTION: Endoribonuclease required for chloroplast ribosomal RNA (rRNA) processing and essential for normal growth and development. May be involved in maturation of both the 5' and 3' ends of 16S, 23S, and 4.5S rRNAs. Cleaves chloroplast rRNAs, mRNAs and tRNAs in vitro. {ECO:0000269|PubMed:25810095}. 65306,17766 At2g25870 (Haloacid dehalogenase-like hydrolase family protein) (Uncharacterized protein At2g25860) (Uncharacterized protein At2g25860:At2g25870),Uncharacterized protein (Fragment) chloroplast [GO:0009507]; endoribonuclease activity [GO:0004521]; metalloendopeptidase activity [GO:0004222]; chloroplast organization [GO:0009658]; chloroplast rRNA processing [GO:1901259] locus:2043535; AT2G25870 Uncharacterized protein family UPF0054 Haloacid dehalogenase-like hydrolase-like protein (Os09g0388400 protein) (cDNA clone:J023027H14, full insert sequence),Os01g0739400 protein,Os09g0393801 protein,Os09g0393501 protein Q6H5D1,A0A0P0V805,A0A0N7KQR1,A0A0P0XL78 Q6H5D1_ORYSJ,A0A0P0V805_ORYSJ,A0A0N7KQR1_ORYSJ,A0A0P0XL78_ORYSJ Os09g0388400 OSJNBa0055N01.29 OSNPB_090388400,Os01g0739400 OSNPB_010739400,Os09g0393801 OSNPB_090393801,Os09g0393501 OSNPB_090393501 ENOG411DT8K CYP97A3 Q93VK5 LUT5_ARATH Protein LUTEIN DEFICIENT 5, chloroplastic (EC 1.14.-.-) (Cytochrome P450 97A3) DISRUPTION PHENOTYPE: Accumulation of alpha-carotene and alpha-cryptoxanthin. Triple mutant CYP97A3-BCH1-BCH2 has a highly retarded growth. {ECO:0000269|PubMed:16492736, ECO:0000269|PubMed:16890225}. microspore formation is defective; microtubule arrays displayed abnormalities during the meiosis-associated process of microspore formation.,18% reduction in lutein and accumulates &,Decrease in &,Reduction in total ββ-carotenoids and increase in total βε-carotenoids.,Accumulates &,Same as lut5-1 but weaker allele. Abnormal carotenoid levels-D. DellaPenna-2006 FUNCTION: Heme-containing cytochrome P450 involved in the biosynthesis of xanthophylls. Specific for beta-ring hydroxylation of alpha- and beta-carotene. Has also a low activity toward the epsilon-rings of alpha-carotene. The beta-ring of alpha-carotene is the preferred substrate in planta. {ECO:0000269|PubMed:16492736, ECO:0000269|PubMed:16890225, ECO:0000269|PubMed:19147649}. MISCELLANEOUS: Alpha-carotene is incorporated into photosystems in lut5 mutants. 1.14.99.45; 1.14.-.- 66846 Protein LUTEIN DEFICIENT 5, chloroplastic (EC 1.14.-.-) (Cytochrome P450 97A3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; carotene beta-ring hydroxylase activity [GO:0010291]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; carotenoid biosynthetic process [GO:0016117]; xanthophyll biosynthetic process [GO:0016123] locus:2034476; AT1G31800 cytochrome P450 Os02g0817900 protein Q0DWE8 Q0DWE8_ORYSJ Os02g0817900 Os02g0817900 OSNPB_020817900 ENOG411DT8T PCMP-H65 Q9SV26 PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030, mitochondrial 86330 Pentatricopeptide repeat-containing protein At4g01030, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2125216; AT4G01030 Pentatricopeptide repeat-containing protein At4g01030 Os05g0586900 protein (cDNA, clone: J065183B01, full insert sequence) B7F8W3 B7F8W3_ORYSJ Os05g0586900 OSNPB_050586900 ENOG411DT8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411DT8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain NAD dependent epimerase/dehydratase family protein, expressed (Os03g0249500 protein) (UDP-glucuronic acid 4-epimerase isoform 1) (cDNA clone:J023078O05, full insert sequence) Q2MJA7 Q2MJA7_ORYSJ Os03g0249500 LOC_Os03g14540 Os03g0249500 OsJ_10146 OSNPB_030249500 ENOG411DT8W ACLA-3,ACLA-1,ACLA-2 O80526,Q9SGY2,O22718,F4I5V8 ACLA3_ARATH,ACLA1_ARATH,ACLA2_ARATH,F4I5V8_ARATH ATP-citrate synthase alpha chain protein 3 (ATP-citrate synthase A-3) (EC 2.3.3.8) (ATP-citrate lyase A-3) (Citrate cleavage enzyme A-3),ATP-citrate synthase alpha chain protein 1 (ATP-citrate synthase A-1) (EC 2.3.3.8) (ATP-citrate lyase A-1) (Citrate cleavage enzyme A-1),ATP-citrate synthase alpha chain protein 2 (ATP-citrate synthase A-2) (EC 2.3.3.8) (ATP-citrate lyase A-2) (Citrate cleavage enzyme A-2),ATP-citrate lyase A-1 FUNCTION: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains (By similarity). {ECO:0000250}.,FUNCTION: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains. {ECO:0000269|PubMed:12376641, ECO:0000269|PubMed:15608338}. MISCELLANEOUS: Plants silencing ACLA-1 show a severe dwarf and dark-green phenotype with some seedling lethal plants, reduced leaf cell size, altered cellular ultrastructure, altered plastid ultrastructure, hyperaccumulation of starch, increased accumulation of anthocyanins, chlorophylls and carotenoids in vegetative organs and decreased accumulation of epicuticular and cuticular waxes. These phenotypes can be complemented by exogenous supply of malonate. MetaCyc:AT1G10670-MONOMER; 2.3.3.8 46946,46679,46760,49049 ATP-citrate synthase alpha chain protein 3 (ATP-citrate synthase A-3) (EC 2.3.3.8) (ATP-citrate lyase A-3) (Citrate cleavage enzyme A-3),ATP-citrate synthase alpha chain protein 1 (ATP-citrate synthase A-1) (EC 2.3.3.8) (ATP-citrate lyase A-1) (Citrate cleavage enzyme A-1),ATP-citrate synthase alpha chain protein 2 (ATP-citrate synthase A-2) (EC 2.3.3.8) (ATP-citrate lyase A-2) (Citrate cleavage enzyme A-2),ATP-citrate lyase A-1 citrate lyase complex [GO:0009346]; cytosol [GO:0005829]; ATP binding [GO:0005524]; ATP citrate synthase activity [GO:0003878]; acetyl-CoA biosynthetic process [GO:0006085]; fatty acid biosynthetic process [GO:0006633],cytosol [GO:0005829]; ATP binding [GO:0005524]; ATP citrate synthase activity [GO:0003878]; lipid metabolic process [GO:0006629],citrate lyase complex [GO:0009346]; cytosol [GO:0005829]; ATP citrate synthase activity [GO:0003878]; lyase activity [GO:0016829]; acetyl-CoA biosynthetic process [GO:0006085]; aging [GO:0007568]; anthocyanin accumulation in tissues in response to UV light [GO:0043481]; carotenoid biosynthetic process [GO:0016117]; chlorophyll biosynthetic process [GO:0015995]; fatty acid biosynthetic process [GO:0006633]; leaf development [GO:0048366]; positive regulation of cell size [GO:0045793]; positive regulation of flower development [GO:0009911]; regulation of embryonic development [GO:0045995]; starch biosynthetic process [GO:0019252]; wax biosynthetic process [GO:0010025] DEVELOPMENTAL STAGE: Expressed in flower buds at stage 6 of development in tapetal cells and at stage 10 in the epidermal cells of growing petals and ovaries. In young siliques, expressed transiently in the inner integument of the ovules just prior to testal deposition. Expressed in the developing embryo with a maximal level at the heart and torpedo stages. The expression then disappears in the mature embryo. During seed germination, expressed in the vascular bundles, apical meristem, epidermis of the seedling cotyledon, stem, and root. Highly expressed in the root tip of seedlings 4 days after imbibition. {ECO:0000269|PubMed:12376641}. TISSUE SPECIFICITY: Expressed in trichomes, epidermal leaf cells, anther tapetal cells, stigma and in young vascular bundles of expanding leaves, cotyledons, roots, pedicel of flowers and siliques. {ECO:0000269|PubMed:12376641}. locus:2012310;,locus:2025865;,locus:2019943; AT1G09430,AT1G10670,AT1G60810 ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA used for the elongation of fatty acids and biosynthesis of isoprenoids flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase which generates the malonyl-CoA used for the synthesis of a multitude of compounds including very long chain fatty acids and flavonoids ATP-citrate synthase subunit alpha chain protein 1 (ATP-citrate synthase A-1) (EC 2.3.3.8) (ATP-citrate lyase A-1) (Citrate cleavage enzyme A-1),ATP-citrate synthase alpha chain protein 2 (ATP-citrate synthase A-2) (EC 2.3.3.8) (ATP-citrate lyase A-2) (Citrate cleavage enzyme A-2),ATP-citrate synthase alpha chain protein 3 (ATP-citrate synthase A-3) (EC 2.3.3.8) (ATP-citrate lyase A-3) (Citrate cleavage enzyme A-3),Os11g0693800 protein Q53JY8,Q2QZ86,Q2QNG7,A0A0P0Y5P9 ACLA1_ORYSJ,ACLA2_ORYSJ,ACLA3_ORYSJ,A0A0P0Y5P9_ORYSJ ACLA-1 Os11g0693800 LOC_Os11g47120 OsJ_34825,ACLA-2 Os11g0696200 LOC_Os11g47330,ACLA-3 Os12g0566300 LOC_Os12g37870,Os11g0693800 OSNPB_110693800 FUNCTION: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains (By similarity). {ECO:0000250}. ENOG411DT8P F10D13.3 Q9C546 Q9C546_ARATH At1g69330/F10D13.3 (RING/U-box superfamily protein) (Uncharacterized protein F10D13.3) (Uncharacterized protein F23O10.9) 30423 At1g69330/F10D13.3 (RING/U-box superfamily protein) (Uncharacterized protein F10D13.3) (Uncharacterized protein F23O10.9) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872] locus:2007101; AT1G69330 RING NA NA NA NA NA NA NA ENOG411DT8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF566) Os02g0794300 protein (Fragment) Q0DWU9 Q0DWU9_ORYSJ Os02g0794300 Os02g0794300 OSNPB_020794300 ENOG411DT8R Q8RXF0,F4JTA8 Q8RXF0_ARATH,F4JTA8_ARATH C2H2-like zinc finger protein (Uncharacterized protein At4g25610),C2H2-like zinc finger protein 66002,64615 C2H2-like zinc finger protein (Uncharacterized protein At4g25610),C2H2-like zinc finger protein nucleic acid binding [GO:0003676] locus:2131889; AT4G25610 zinc finger Os09g0570200 protein (cDNA clone:J033081C08, full insert sequence) Q652N7 Q652N7_ORYSJ Os09g0570200 OJ1003_C09.32 OsJ_30417 OSNPB_090570200 ENOG411DT8S GLDP2,GLDP1 O80988,Q94B78,B3H5Y8 GCSP2_ARATH,GCSP1_ARATH,B3H5Y8_ARATH Glycine dehydrogenase (decarboxylating) 2, mitochondrial (EC 1.4.4.2) (Glycine cleavage system P protein 2) (Glycine decarboxylase 2) (Glycine decarboxylase P-protein 2) (AtGLDP2) (Glycine dehydrogenase (aminomethyl-transferring) 2),Glycine dehydrogenase (decarboxylating) 1, mitochondrial (EC 1.4.4.2) (Glycine cleavage system P protein 1) (Glycine decarboxylase 1) (Glycine decarboxylase P-protein 1) (AtGLDP1) (Glycine dehydrogenase (aminomethyl-transferring) 1),Glycine cleavage system P protein (EC 1.4.4.2) DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with GLDP1. Gldp1 and gldp2 double mutants have a seedling development arrested at the cotyledon stage even under nonphotorespiratory conditions. {ECO:0000269|PubMed:17496108}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with GLDP2. Gldp1 and gldp2 double mutants have a seedling development arrested at the cotyledon stage even under nonphotorespiratory conditions. {ECO:0000269|PubMed:17496108}. No visible phenotype.,Typically do not survive for longer than 3-4 weeks even under the non-photorespiratory growth conditions of 0.9% CO2 in combination with low light intensity.,When germinated on MS medium in a CO2 concentration close to 1% in combination with moderate light intensity. Under these conditions which very strongly suppress 2-phosphoglycolate synthesis by Rubisco several very small plants with whitish leaves and a growth arrest at the cotyledon stage segregated. Shadowing by leaves of neighbouring plants resulted in minor chlorophyll biosynthesis but growth was not significantly improved.,No significant difference in photosynthetic performance relative to wild-type plants.,When plants were exposed for four hours to high light intensities of 800-1000 ;mol.s-1.m-2 in combination with a 4-to-5 °C higher temperature stronger increase in leaf glycine content of the Atgldp1-1 mutant in comparison with both Atgldp2-2 and wild-type plants. FUNCTION: The glycine decarboxylase (GDC) or glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (By similarity). {ECO:0000250, ECO:0000269|PubMed:17496108}.,FUNCTION: The glycine cleavage system catalyzes the degradation of glycine. {ECO:0000256|RuleBase:RU364056}. ARA:AT2G26080-MONOMER;,ARA:AT4G33010-MONOMER; R-ATH-6783984; 1.4.4.2 113776,112925,106225 Glycine dehydrogenase (decarboxylating) 2, mitochondrial (EC 1.4.4.2) (Glycine cleavage system P protein 2) (Glycine decarboxylase 2) (Glycine decarboxylase P-protein 2) (AtGLDP2) (Glycine dehydrogenase (aminomethyl-transferring) 2),Glycine dehydrogenase (decarboxylating) 1, mitochondrial (EC 1.4.4.2) (Glycine cleavage system P protein 1) (Glycine decarboxylase 1) (Glycine decarboxylase P-protein 1) (AtGLDP1) (Glycine dehydrogenase (aminomethyl-transferring) 1),Glycine cleavage system P protein (EC 1.4.4.2) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glycine dehydrogenase (decarboxylating) activity [GO:0004375]; glycine catabolic process [GO:0006546],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; mitochondrion [GO:0005739]; glycine dehydrogenase (decarboxylating) activity [GO:0004375]; glycine catabolic process [GO:0006546]; response to cadmium ion [GO:0046686],mitochondrion [GO:0005739]; glycine dehydrogenase (decarboxylating) activity [GO:0004375]; glycine catabolic process [GO:0006546] TISSUE SPECIFICITY: Expressed in leaves. Detected in roots, stems, flowers and siliques. {ECO:0000269|PubMed:17496108}. locus:2057464;,locus:2123777; AT2G26080,AT4G33010 Glycine dehydrogenase decarboxylating Os06g0611900 protein,Os06g0611900 protein (Fragment),Os01g0711400 protein (Fragment) A0A0P0WYK7,A0A0P0WYZ5,A0A0P0V7A3 A0A0P0WYK7_ORYSJ,A0A0P0WYZ5_ORYSJ,A0A0P0V7A3_ORYSJ Os06g0611900 OSNPB_060611900,Os01g0711400 OSNPB_010711400 ENOG411DT8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACTIN Actin (Os05g0438800 protein) (Putative actin 1) (cDNA clone:J023104C20, full insert sequence) Q75HX0 Q75HX0_ORYSJ Os05g0438800 Os05g0438800 OsJ_18684 OSJNBb0042J17.12 OSNPB_050438800 ENOG411DT8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3741) Os02g0816400 protein (cDNA clone:J033028I16, full insert sequence) Q6K6B0 Q6K6B0_ORYSJ Os02g0816400 OsJ_08870 OSNPB_020816400 P0643F09.17 ENOG411DT8Z CYP18-2 Q9SIH1 CP18B_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-2 (PPIase CYP18-2) (EC 5.2.1.8) (Cyclophilin of 18 kDa 2) (Cyclophilin-18-2) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. R-ATH-72163; 5.2.1.8 18233 Peptidyl-prolyl cis-trans isomerase CYP18-2 (PPIase CYP18-2) (EC 5.2.1.8) (Cyclophilin of 18 kDa 2) (Cyclophilin-18-2) cytosol [GO:0005829]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2053491; AT2G36130 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q93VG0 Q93VG0_ORYSJ OsCyp3 Os08g0559400 OsJ_28276 OSNPB_080559400 P0562A06.21 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DT84 MDF20.4 Q8W109 Q8W109_ARATH Agenet and bromo-adjacent homology (BAH) domain-containing protein (At5g55600/MDF20_4) 75431 Agenet and bromo-adjacent homology (BAH) domain-containing protein (At5g55600/MDF20_4) chromatin binding [GO:0003682] locus:2162117; AT5G55600 agenet domain-containing protein bromo-adjacent homology (BAH) domain-containing protein Os07g0607300 protein (Putative agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein) (cDNA clone:J033106K01, full insert sequence),Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like (Os07g0607300 protein) Q69J34,Q69J33 Q69J34_ORYSJ,Q69J33_ORYSJ Os07g0607300 P0493C06.37-1 OsJ_25061 OSJNBa0072I06.22-1 OSNPB_070607300,Os07g0607300 P0493C06.37-2 Os07g0607300 OSJNBa0072I06.22-2 OSNPB_070607300 ENOG411DT85 Q949Z1 PGLR4_ARATH Polygalacturonase At1g48100 (PG) (EC 3.2.1.15) (Pectinase At1g48100) FUNCTION: Polygalacturonase not involved in the final stages of pod shatter. {ECO:0000269|PubMed:19168715}. ARA:AT1G48100-MONOMER; 3.2.1.15 51353 Polygalacturonase At1g48100 (PG) (EC 3.2.1.15) (Pectinase At1g48100) cell wall [GO:0005618]; extracellular region [GO:0005576]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed in flowers and stems. {ECO:0000269|PubMed:17010199}. locus:2023817; AT1G48100 polygalacturonase Os01g0329300 protein (Putative polygalacturonase PG2),Os05g0279900 protein Q5ZDR5,A0A0P0WK35 Q5ZDR5_ORYSJ,A0A0P0WK35_ORYSJ Os01g0329300 OSNPB_010329300 P0554D10.14,Os05g0279900 OSNPB_050279900 ENOG411DT87 PCMP-H21 Q9LNU6 PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 84864 Pentatricopeptide repeat-containing protein At1g20230 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2198546; AT1G20230 Pentatricopeptide repeat-containing protein Os05g0370000 protein Q60EX3 Q60EX3_ORYSJ Os05g0370000 Os05g0370000 OJ1118_F06.2 OSNPB_050370000 ENOG411DT80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARF Os02g0128600 protein (Putative ADP-ribosylation factor) (cDNA clone:006-207-D04, full insert sequence) (cDNA clone:J033116J07, full insert sequence) Q6Z6Z4 Q6Z6Z4_ORYSJ Os02g0128600 OsJ_05228 OSNPB_020128600 P0576F08.9 ENOG411DT81 CCT2,CCT1 F4JJE0,Q9ZV56,A0A1P8AXC2 CCT2_ARATH,CCT1_ARATH,A0A1P8AXC2_ARATH Choline-phosphate cytidylyltransferase 2 (AtCCT2) (EC 2.7.7.15) (CTP:phosphocholine cytidylyltransferase 2) (Phosphorylcholine transferase 2),Choline-phosphate cytidylyltransferase 1 (AtCCT1) (EC 2.7.7.15) (CTP:phosphocholine cytidylyltransferase 1) (Phosphorylcholine transferase 1),Phosphorylcholine cytidylyltransferase DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19667100}. FUNCTION: Plays an important role in the biosynthesis of the phospholipid phosphatidylcholine. Catalyzes the formation of CDP-choline. {ECO:0000269|PubMed:19667100}. PATHWAY: Phospholipid metabolism; phosphatidylcholine biosynthesis; phosphatidylcholine from phosphocholine: step 1/2. ARA:AT2G32260-MONOMER; R-ATH-1483191; 2.7.7.15 34983,38486,33508 Choline-phosphate cytidylyltransferase 2 (AtCCT2) (EC 2.7.7.15) (CTP:phosphocholine cytidylyltransferase 2) (Phosphorylcholine transferase 2),Choline-phosphate cytidylyltransferase 1 (AtCCT1) (EC 2.7.7.15) (CTP:phosphocholine cytidylyltransferase 1) (Phosphorylcholine transferase 1),Phosphorylcholine cytidylyltransferase choline-phosphate cytidylyltransferase activity [GO:0004105]; phosphatidylcholine biosynthetic process [GO:0006656],nucleotidyltransferase activity [GO:0016779]; biosynthetic process [GO:0009058] locus:2129705;,locus:2062591; AT4G15130,AT2G32260 Choline-phosphate cytidylyltransferase Cholinephosphate cytidylyltransferase (Cytidylyltransferase family protein, expressed) (Os10g0578900 protein) (Putative cholinephosphate cytidylyltransferase) (cDNA clone:J033076F05, full insert sequence),Os02g0173500 protein (Putative choline-phosphate cytidylyltransferase) (cDNA clone:J023056M07, full insert sequence),Os08g0161800 protein (Putative CTP:phosphorylcholine cytidylyltransferase) (cDNA clone:006-204-E10, full insert sequence),Os08g0161800 protein (Fragment) Q9XFE5,Q6H513,Q7EYE4,A0A0P0XCV8 Q9XFE5_ORYSJ,Q6H513_ORYSJ,Q7EYE4_ORYSJ,A0A0P0XCV8_ORYSJ CPCT LOC_Os10g42790 Os10g0578900 OsJ_32595 OSJNBa0056G17.15 OSNPB_100578900,Os02g0173500 OSJNBa0073A21.13 OSNPB_020173500,P0577B11.124 Os08g0161800 OSNPB_080161800,Os08g0161800 OSNPB_080161800 ENOG411DT82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os06g0491800 protein (Fragment),Os02g0828533 protein (Fragment) A0A0P0WWV7,A0A0P0VRK4 A0A0P0WWV7_ORYSJ,A0A0P0VRK4_ORYSJ Os06g0491800 OSNPB_060491800,Os02g0828533 OSNPB_020828533 ENOG411DT83 DIR24,DIR9 Q9M3C8,O80630 DIR24_ARATH,DIR9_ARATH Dirigent protein 24 (AtDIR24),Dirigent protein 9 (AtDIR9) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 32506,33762 Dirigent protein 24 (AtDIR24),Dirigent protein 9 (AtDIR9) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2100661;,locus:2039737; AT3G55230,AT2G39430 Disease resistance-responsive Dirigent protein Q10N68 Q10N68_ORYSJ LOC_Os03g17220 Os03g0280750 OSNPB_030280750 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411DT88 CPEFG Q9SI75 EFGC_ARATH Elongation factor G, chloroplastic (cEF-G) (Elongation factor EF-G/SCO1) (Protein SNOWY COTYLEDON 1, chloroplastic) (AtSCO1) DISRUPTION PHENOTYPE: Embryo lethality. {ECO:0000269|PubMed:17629920}. Chloroplast differentiation was severely impaired in cotyledons but not in true leaves during early seedling growth giving rise to the seedlings with white cotyledons. In sco1 chloroplast biosynthesis is slowed down leading to a delayed greening in cotyledons. Seed germination was delayed too in both dark-grown seeds and light exposed seeds. Adult mutant plants had flowering time delayed for a week while plant senescence was not affected. Mutant plants had reduced fresh weight throughout the life cycle. Seed set was affected too; mutant plants had reached only 40% of amount of seeds produced by the wild type plants. Null: Embryo defective; Globular; Knockdown: Delayed germination; Pale cotyledons-Apel; Hangarter-2007 FUNCTION: Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Required for the eoplasts redifferentiation into chloroplasts after germination. {ECO:0000255|HAMAP-Rule:MF_03063, ECO:0000269|PubMed:16525888, ECO:0000269|PubMed:17629920}. PATHWAY: Protein biosynthesis; polypeptide chain elongation. {ECO:0000255|HAMAP-Rule:MF_03063}. 86058 Elongation factor G, chloroplastic (cEF-G) (Elongation factor EF-G/SCO1) (Protein SNOWY COTYLEDON 1, chloroplastic) (AtSCO1) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; chloroplast organization [GO:0009658]; post-embryonic development [GO:0009791]; seed germination [GO:0009845] TISSUE SPECIFICITY: Expressed in cotyledons and at lower levels in adult leaves. {ECO:0000269|PubMed:17629920}. locus:2026212; AT1G62750 elongation factor G Os04g0538100 protein (Fragment),Os04g0538166 protein (Fragment) Q0JBE3,A0A0N7KJF4 Q0JBE3_ORYSJ,A0A0N7KJF4_ORYSJ Os04g0538100 Os04g0538100 OSNPB_040538100,Os04g0538166 OSNPB_040538166 ENOG411EHHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUC B3H6V5 B3H6V5_ARATH Transmembrane protein 10894 Transmembrane protein integral component of membrane [GO:0016021] locus:4515102772; AT1G78172 NA NA NA NA NA NA NA NA ENOG411DVPZ CHIP Q9SRS9 CHIP_ARATH E3 ubiquitin-protein ligase CHIP (EC 2.3.2.27) (Carboxyl terminus of HSC70-interacting protein) (AtCHIP) (Plant U-box protein 61) (RING-type E3 ubiquitin transferase CHIP) (U-box domain-containing protein 61) FUNCTION: Has E3 ubiquitin-protein ligase activity and may target misfolded substrates towards proteasomal degradation. Regulates the activity of some serine/threonine-protein phosphatases by E3 ubiquitin-protein ligase activity. Required for responses to biotic and abiotic stresses such as auxin, abscisic acid (ABA), low and high temperature and darkness, probably through the activation of serine/threonine-protein phosphatase and the subsequent modification of the plasma membrane composition. Regulates the chloroplastic Clp proteolytic activity in response to stresses. Ubiquitylates FtsH1, a component of the chloroplast FtsH protease, and affects protein degradation in chloroplasts. Mediates plastid precursor degradation to prevent cytosolic precursor accumulation, together with the molecular chaperone HSC70-4. Mediates ubiquitination of transit peptides and thereby led to their degradation through the ubiquitin-proteasome system. {ECO:0000269|PubMed:12805616, ECO:0000269|PubMed:16640601, ECO:0000269|PubMed:17241447, ECO:0000269|PubMed:17714429, ECO:0000269|PubMed:20028838}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000269|PubMed:16640601, ECO:0000269|PubMed:17241447}. 2.3.2.27 31655 E3 ubiquitin-protein ligase CHIP (EC 2.3.2.27) (Carboxyl terminus of HSC70-interacting protein) (AtCHIP) (Plant U-box protein 61) (RING-type E3 ubiquitin transferase CHIP) (U-box domain-containing protein 61) chaperone binding [GO:0051087]; ubiquitin-protein transferase activity [GO:0004842]; protein ubiquitination [GO:0016567]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to temperature stimulus [GO:0009266] locus:2079716; AT3G07370 ubiquitin-protein ligase Os08g0113300 protein (cDNA clone:002-107-D07, full insert sequence),Os05g0104900 protein Q6YXU5,Q65XJ0 Q6YXU5_ORYSJ,Q65XJ0_ORYSJ Os08g0113300 OSNPB_080113300 P0427G12.1 P0498H04.31,Os05g0104900 OSJNBb0035J08.3 OSNPB_050104900 P0668H12.18 ENOG411DVPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles which further mediate biosynthetic protein transport from the ER via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) Coatomer subunit epsilon-2 (Epsilon-coat protein 2) (Epsilon-COP 2) P0C541 COPE2_ORYSJ Os04g0644700 LOC_Os04g55200 OsJ_015672 OSJNBa0033G05.19 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. ENOG411DVPY dl4665w O23569 O23569_ARATH L-lactate dehydrogenase (EC 1.1.1.27) PATHWAY: Fermentation; pyruvate fermentation to lactate; (S)-lactate from pyruvate: step 1/1. {ECO:0000256|RuleBase:RU000496}. R-ATH-70268; 1.1.1.27 37950 L-lactate dehydrogenase (EC 1.1.1.27) cytosol [GO:0005829]; plasma membrane [GO:0005886]; L-lactate dehydrogenase activity [GO:0004459]; carbohydrate metabolic process [GO:0005975]; carboxylic acid metabolic process [GO:0019752]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651] locus:2130764; AT4G17260 L-lactate dehydrogenase L-lactate dehydrogenase (EC 1.1.1.27) Q0E4Q5,Q9ZRJ5,Q9LWZ6 Q0E4Q5_ORYSJ,Q9ZRJ5_ORYSJ,Q9LWZ6_ORYSJ Os02g0105400 Os02g0105400 OSNPB_020105400,OJA1212_C06.25 Os02g0105400 OJ1212_C06.24 OJ1359_D06.5 OsJ_05023 OSNPB_020105400,Os06g0104900 Os06g0104900 OSNPB_060104900 P0644B06.17 ENOG411DVPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os06g0105800 protein (Putative MYB29 protein) (cDNA clone:002-130-F07, full insert sequence) (cDNA clone:J013156D15, full insert sequence) Q5VS69 Q5VS69_ORYSJ Os06g0105800 Os06g0105800 OSNPB_060105800 P0644B06.29 ENOG411DVPW A0A1I9LLA3,Q84Q59,A0A1I9LLA0,Q8L845,F4IWL0,F4IM97 A0A1I9LLA3_ARATH,Q84Q59_ARATH,A0A1I9LLA0_ARATH,Q8L845_ARATH,F4IWL0_ARATH,F4IM97_ARATH Nucleotidylyl transferase superfamily protein,At3g27610 (Nucleotidylyl transferase superfamily protein) (Uncharacterized protein At3g27610),Nucleotidylyl transferase superfamily protein (Uncharacterized protein At2g01220) (Uncharacterized protein At2g01220:At2g01230) 31001,42608,35803,42277,35051,42148 Nucleotidylyl transferase superfamily protein,At3g27610 (Nucleotidylyl transferase superfamily protein) (Uncharacterized protein At3g27610),Nucleotidylyl transferase superfamily protein (Uncharacterized protein At2g01220) (Uncharacterized protein At2g01220:At2g01230) transferase activity [GO:0016740]; biosynthetic process [GO:0009058],chloroplast envelope [GO:0009941]; nucleus [GO:0005634]; transferase activity [GO:0016740]; biosynthetic process [GO:0009058] locus:2038711; AT3G27610,AT2G01220 NA Os01g0691500 protein (cDNA clone:002-128-A02, full insert sequence),Os01g0691500 protein Q5N7Q4,A0A0P0V6U0 Q5N7Q4_ORYSJ,A0A0P0V6U0_ORYSJ P0034C09.16-1 Os01g0691500 OSNPB_010691500,Os01g0691500 OSNPB_010691500 ENOG411DVPT ABCC10 Q9LYS2 AB10C_ARATH ABC transporter C family member 10 (ABC transporter ABCC.10) (AtABCC10) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 14) (Glutathione S-conjugate-transporting ATPase 14) (Multidrug resistance-associated protein 14) FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}. ARA:AT3G59140-MONOMER; 3.6.3.44 162813 ABC transporter C family member 10 (ABC transporter ABCC.10) (AtABCC10) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 14) (Glutathione S-conjugate-transporting ATPase 14) (Multidrug resistance-associated protein 14) integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}. locus:2077750; AT3G59140 ABC transporter C family member Os06g0158900 protein,Os12g0562700 protein,Os11g0155600 protein A0A0N7KLK4,A0A0P0YBE6,A0A0P0XZ39 A0A0N7KLK4_ORYSJ,A0A0P0YBE6_ORYSJ,A0A0P0XZ39_ORYSJ Os06g0158900 OSNPB_060158900,Os12g0562700 OSNPB_120562700,Os11g0155600 OSNPB_110155600 ENOG411DVPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF642) Os04g0494900 protein (cDNA clone:J033076M24, full insert sequence),Os04g0494800 protein,Os07g0132600 protein (Fragment),Os03g0328501 protein Q0JC33,Q0JC34,A0A0P0WBX7,A0A0P0X2P9,A0A0P0VWX1 Q0JC33_ORYSJ,Q0JC34_ORYSJ,A0A0P0WBX7_ORYSJ,A0A0P0X2P9_ORYSJ,A0A0P0VWX1_ORYSJ Os04g0494900 Os04g0494900 OSNPB_040494900,Os04g0494800 Os04g0494800 OSNPB_040494800,Os04g0494800 OSNPB_040494800,Os07g0132600 OSNPB_070132600,Os03g0328501 OSNPB_030328501 ENOG411DVPR SFH12,SFH10 Q94A34,Q9SI13,A0A1P8AY48,A0A1P8AYA7,A0A1P8AYA0,A0A1P8AY47 SFH12_ARATH,SFH10_ARATH,A0A1P8AY48_ARATH,A0A1P8AYA7_ARATH,A0A1P8AYA0_ARATH,A0A1P8AY47_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 (Protein SEC FOURTEEN HOMOLOGS 12) (AtSFH12),Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 (Protein SEC FOURTEEN HOMOLOGS 10) (AtSFH10),Sec14p-like phosphatidylinositol transfer family protein FUNCTION: Required for transport of secretory proteins from the Golgi complex (By similarity). Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro. {ECO:0000250, ECO:0000269|PubMed:16697077}.,FUNCTION: Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}. 61826,63359,55045,53605,61919,50402 Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 (Protein SEC FOURTEEN HOMOLOGS 12) (AtSFH12),Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 (Protein SEC FOURTEEN HOMOLOGS 10) (AtSFH10),Sec14p-like phosphatidylinositol transfer family protein Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; protein transport [GO:0015031] DEVELOPMENTAL STAGE: Detected in the mature and germinating pollen grains. {ECO:0000269|PubMed:16697077}. TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:16697077}. locus:2115265;,locus:2053114; AT4G36490,AT2G18180 CRAL/TRIO N-terminal domain Os02g0133200 protein (Putative phosphatidylinositol/ phophatidylcholine transfer protein) (cDNA clone:J023131C20, full insert sequence) Q6Z6I5 Q6Z6I5_ORYSJ Os02g0133200 Os02g0133200 OSNPB_020133200 P0030G11.14 ENOG411DVPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA His Kinase A (phospho-acceptor) domain Os06g0654300 protein A0A0N7KMI7 A0A0N7KMI7_ORYSJ Os06g0654300 OSNPB_060654300 ENOG411DVPM AMC3,MC3 Q9FMG1,F4KDK6 MCA3_ARATH,F4KDK6_ARATH Metacaspase-3 (AtMC3) (EC 3.4.22.-) (Metacaspase 1a) (AtMCP1a),Metacaspase 3 3.4.22.- 40480,34615 Metacaspase-3 (AtMC3) (EC 3.4.22.-) (Metacaspase 1a) (AtMCP1a),Metacaspase 3 cysteine-type peptidase activity [GO:0008234] locus:2173398; AT5G64240 Caspase domain ICE-like protease p20 domain containing protein, expressed (Os03g0389100 protein) (Putative metacaspase) (cDNA clone:001-110-G09, full insert sequence),Os03g0389501 protein (Fragment),Os03g0389400 protein (Fragment) Q75LQ8,A0A0P0VYB1,A0A0P0VY86 Q75LQ8_ORYSJ,A0A0P0VYB1_ORYSJ,A0A0P0VY86_ORYSJ Os03g0389100 LOC_Os03g27190 Os03g0389100 OsJ_11107 OSJNBa0017N12.17 OSNPB_030389100,Os03g0389501 OSNPB_030389501,Os03g0389400 OSNPB_030389400 ENOG411DVPJ QQT2 Q8W586 Q8W586_ARATH AT4g21800/F17L22_260 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) Embryo defective; Preglobular-M. Devic-2007 FUNCTION: Small GTPase that is essential for the correct formation of the tangential divisions in early embryos. Associates with microtubule during mitosis and may function in the positioning of the division plane. May participate in the patterning of the early embryo at the octant-dermatogen transition. {ECO:0000269|PubMed:17419841}. 42551 AT4g21800/F17L22_260 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) microtubule [GO:0005874]; GTPase activity [GO:0003924]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; RNA polymerase II complex import to nucleus [GO:0044376]; RNA polymerase III complex localization to nucleus [GO:1990022] locus:2119093; AT4G21800 GPN-loop GTPase 1 Os03g0312600 protein (XPA-binding protein 1, putative, expressed) (cDNA clone:J033042P15, full insert sequence),Os03g0312600 protein (Fragment) Q10MD7,A0A0P0VXI3 Q10MD7_ORYSJ,A0A0P0VXI3_ORYSJ LOC_Os03g19870 Os03g0312600 OSNPB_030312600,Os03g0312600 OSNPB_030312600 ENOG411DVPK POLA3 F4JZZ1 F4JZZ1_ARATH DNA primase (EC 2.7.7.-) R-ATH-113501;R-ATH-174411;R-ATH-174430;R-ATH-68952;R-ATH-68962;R-ATH-69091;R-ATH-69166;R-ATH-69183; Purine metabolism (00230),Pyrimidine metabolism (00240),DNA replication (03030),Metabolic pathways (01100) 2.7.7.- 52068 DNA primase (EC 2.7.7.-) alpha DNA polymerase:primase complex [GO:0005658]; DNA primase activity [GO:0003896]; single-stranded DNA binding [GO:0003697]; DNA replication, synthesis of RNA primer [GO:0006269] locus:2152990; AT5G41880 DNA primase Os05g0358200 protein (Fragment) A0A0P0WL92 A0A0P0WL92_ORYSJ Os05g0358200 OSNPB_050358200 ENOG411DVPH WEE1 Q8L4H0 WEE1_ARATH Wee1-like protein kinase (EC 2.7.10.2) (Wee1-At) DISRUPTION PHENOTYPE: Plants show no obvious cell division or endoreduplication phenotype when grown under nonstress conditions, but are hypersensitive to agents that impair DNA replication. {ECO:0000269|PubMed:17209125}. significant decreased root elongation rates densely clustered hairs at the root tip and outgrowth of lateral roots Sensitive to replication-inhibiting drugs-L. De Veylder-2007 FUNCTION: Cell cycle regulatory kinase that is not rate-limiting for cycle progression under normal growth conditions. Transcriptionally activated upon DNA stress or damage in an ATR- or ATM-dependent manner. Once activated, inhibits plant growth by arresting dividing cells in the G2 phase before proceeding into mitosis. Down-regulates CDKA-1 and CDKD-2 by tyrosine phosphorylation. May target principally CDKA-1. {ECO:0000269|PubMed:12111237, ECO:0000269|PubMed:16856985, ECO:0000269|PubMed:17209125}. R-ATH-69202;R-ATH-69273;R-ATH-69478;R-ATH-69656;R-ATH-75035; 2.7.10.2 56530 Wee1-like protein kinase (EC 2.7.10.2) (Wee1-At) nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; non-membrane spanning protein tyrosine kinase activity [GO:0004715]; protein kinase activity [GO:0004672]; cell cycle arrest [GO:0007050]; cell division [GO:0051301]; DNA replication checkpoint [GO:0000076] TISSUE SPECIFICITY: Expressed in shoot apex, vasculatures tissues of roots and leaves, and developing flowers. {ECO:0000269|PubMed:12111237, ECO:0000269|PubMed:17209125}. locus:2024780; AT1G02970 wee1-like protein Wee1-like protein kinase (EC 2.7.10.2) Q6Z829 WEE1_ORYSJ WEE1 Os02g0135300 LOC_Os02g04240 P0585B01.27 ENOG411DVPI PAB7 Q9ZQA8 PABP7_ARATH Polyadenylate-binding protein 7 (PABP-7) (Poly(A)-binding protein 7) FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation (By similarity). {ECO:0000250}. MISCELLANEOUS: A.thaliana contains 8 PABP genes. R-ATH-156827;R-ATH-975956;R-ATH-975957; 67918 Polyadenylate-binding protein 7 (PABP-7) (Poly(A)-binding protein 7) cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; regulation of translation [GO:0006417] TISSUE SPECIFICITY: Expressed predominantly in siliques. {ECO:0000269|PubMed:12586718}. locus:2040625; AT2G36660 Polyadenylate-binding protein Polyadenylate-binding protein (PABP) Q10N87 Q10N87_ORYSJ Os03g0278500 LOC_Os03g17030 Os03g0278500 OsJ_10348 OSNPB_030278500 FUNCTION: Binds the poly(A) tail of mRNA. {ECO:0000256|RuleBase:RU362004}. ENOG411DVPF ACG12,ACG9,G6PD5 Q9FJI5,Q9LK23,A0A1I9LLZ6,A0A1I9LLZ7 G6PD6_ARATH,G6PD5_ARATH,A0A1I9LLZ6_ARATH,A0A1I9LLZ7_ARATH Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2 (EC 1.1.1.49) (G6PDH6) (G6PD6),Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 (EC 1.1.1.49) (G6PDH5) (G6PD5),Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. The main function of this enzyme is to provide reducing power (NADPH) and pentose phosphates for fatty acid and nucleic acid synthesis which are involved in membrane synthesis and cell division.,FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. {ECO:0000256|RuleBase:RU362120}. MISCELLANEOUS: There are 6 glucose-6-phosphate 1-dehydrogenase genes in A.thaliana. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.,PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3. {ECO:0000256|RuleBase:RU362120}. R-ATH-5628897;R-ATH-71336; 1.1.1.49; 1.1.1.49 59116,59157,67479,65604 Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2 (EC 1.1.1.49) (G6PDH6) (G6PD6),Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 (EC 1.1.1.49) (G6PDH5) (G6PD5),Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) cytosol [GO:0005829]; glucose-6-phosphate dehydrogenase activity [GO:0004345]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt, oxidative branch [GO:0009051],chloroplast [GO:0009507]; cytosol [GO:0005829]; glucose-6-phosphate dehydrogenase activity [GO:0004345]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt, oxidative branch [GO:0009051]; response to cadmium ion [GO:0046686],integral component of membrane [GO:0016021]; glucose-6-phosphate dehydrogenase activity [GO:0004345]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt [GO:0006098],glucose-6-phosphate dehydrogenase activity [GO:0004345]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt [GO:0006098] locus:2154805;,locus:2086558; AT5G40760,AT3G27300 glucose-6-phosphate 1-dehydrogenase Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49),Os04g0485300 protein (Fragment),Os04g0485300 protein Q7X7I6,Q6K5H5,A0A0P0WBK9,A0A0N7KJ94 Q7X7I6_ORYSJ,Q6K5H5_ORYSJ,A0A0P0WBK9_ORYSJ,A0A0N7KJ94_ORYSJ Os04g0485300 Os04g0485300 OJ000223_09.8 OSJNBa0081L15.18 OSNPB_040485300,Os02g0600400 Os02g0600400 OJ1791_B03.23 OsJ_07404 OSNPB_020600400,Os04g0485300 OSNPB_040485300 FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. {ECO:0000256|RuleBase:RU362120}. ENOG411DVPG CAND1 Q8L5Y6 CAND1_ARATH Cullin-associated NEDD8-dissociated protein 1 (Cullin-associated and neddylation-dissociated protein 1) (AtCAND1) (Protein ENHANCER OF TIR1-1 AUXIN RESISTANCE 2) (Protein HEMIVENATA) DISRUPTION PHENOTYPE: Developmental phenotypes such as dwarfism, organ defects, short inflorescences and mishaped leaves. Low fertility and reduced responses to hormones. {ECO:0000269|PubMed:15181201, ECO:0000269|PubMed:15208391, ECO:0000269|PubMed:16943276}. Similar to Atcand1-1 mutant. Resistant to sirtinol and auxin but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1 namely short petioles downwardly curling leaves shorter inflorescence. More severe inflorescence phenotype were found in this mutant compared to the atcand1-1 (ems-generated) mutation. Mutant plants were completely sterile.,Mutants resistant to sirtinol and auxin but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1 namely short petioles downwardly curling leaves short inflorescence and reduced fertility.,Similar to cand1-2 and cand1-3 mutants. Rosette leaves of mutants plants were much smaller than those of wild-type plants and had a wavy morphology. Mutants flowered later than wild-type plants with an increased number of rosette leaves indicating that the vegetative to reproductive growth transition of the primary shoot apical meristem was affected. The growth of axillary meristems is also abnormal where a large number of smaller leaves are produced. Furthermore the mutants have very low fertility with less than one seed produced on average per silique. Mutant plants continued to make new flowers while wild-type plants of the same age started to senesce. Other notable phenotypes of cand1 mutants include dwarfism and loss of apical dominance. When examined closely dwarfism largely results from reduced stem elongation. Mutant plants had a strong increase in the number of secondary inflorescences an indication that they have lost apical dominance.,When grown in darkness mutant seedlings exibited mild photomorphogenic phenotypes with short hypocotyls and opened cotyledons.,Cotyledon areoles (regions of the lamina completely bordered by veins) were often incompletely closed while in the wild type the cotyledons contained three or four complete areoles. The reduction in vein numbers was also apparent in the first two rosette leaves which had fewer secondary veins than the wild type. No quaternary veins and only a few tertiary veins which ended blindly within the areoles were present in mutant leaves the intramarginal vein of which was occasionally interrupted. Dwarf; Increased rosette leaf number; Aerial rosettes; Increased branching; Delayed senescence; Altered response to auxin-W. Gray-2004 FUNCTION: Key assembly factor of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes that promotes the exchange of the substrate-recognition F-box subunit in SCF complexes, thereby playing a key role in the cellular repertoire of SCF complexes. Acts as a F-box protein exchange factor (By similarity). Required for SCF(TIR1) function. Modulates SCF(TIR1) function through its interactions with the CUL1 subunit. Represses photomorphogenesis by promoting HY5 degradation in darkness. {ECO:0000250, ECO:0000269|PubMed:15181201, ECO:0000269|PubMed:15208391, ECO:0000269|PubMed:15208392, ECO:0000269|PubMed:16943276, ECO:0000269|PubMed:18550827}. R-ATH-6798695;R-ATH-8951664; 134897 Cullin-associated NEDD8-dissociated protein 1 (Cullin-associated and neddylation-dissociated protein 1) (AtCAND1) (Protein ENHANCER OF TIR1-1 AUXIN RESISTANCE 2) (Protein HEMIVENATA) cell wall [GO:0005618]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein ubiquitination [GO:0016567]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; SCF complex assembly [GO:0010265]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228]; xylem and phloem pattern formation [GO:0010051] TISSUE SPECIFICITY: Highly expressed in roots. Expressed in stems, flowers and siliques. {ECO:0000269|PubMed:15208392}. locus:2065279; AT2G02560 Cullin-associated NEDD8-dissociated protein Os02g0169800 protein (Fragment),Os02g0167700 protein (Putative TIP120 protein) (cDNA clone:J023003N20, full insert sequence) C7IY94,Q6H4V4 C7IY94_ORYSJ,Q6H4V4_ORYSJ Os02g0169800 Os02g0169800 OSNPB_020169800,Os02g0167700 OsJ_05528 OSJNBa0085K21.46 OSNPB_020167700 ENOG411DVPD MAN7 Q9FJZ3 MAN7_ARATH Mannan endo-1,4-beta-mannosidase 7 (EC 3.2.1.78) (Beta-mannanase 7) (Endo-beta-1,4-mannanase 7) (AtMAN7) Delayed germination-A. Matilla-2011 FUNCTION: Required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. May participate in the hydrolysis of the mannans in the cell wall of germinating seeds. {ECO:0000269|PubMed:23461773}. ARA:AT5G66460-MONOMER; 3.2.1.78; 3.2.1.78 48573 Mannan endo-1,4-beta-mannosidase 7 (EC 3.2.1.78) (Beta-mannanase 7) (Endo-beta-1,4-mannanase 7) (AtMAN7) cell periphery [GO:0071944]; extracellular region [GO:0005576]; mannan endo-1,4-beta-mannosidase activity [GO:0016985]; mannan catabolic process [GO:0046355]; seed germination [GO:0009845] TISSUE SPECIFICITY: Expressed in stems, flowers, siliques and seeds (PubMed:16897088). Expressed in root vasculature, leaf hydathodes, anther filaments, stigma, sepal vasculature, at the base and apical parts of siliques, and replum. Expressed in the micropylar endosperm and radicle tip in early germinating seeds (PubMed:23461773). {ECO:0000269|PubMed:16897088, ECO:0000269|PubMed:23461773}. locus:2154905; AT5G66460 Mannan endo-14-beta-mannosidase Mannan endo-1,4-beta-mannosidase 1 (EC 3.2.1.78) (Beta-mannanase 1) (Endo-beta-1,4-mannanase 1) (OsMAN1),Putative mannan endo-1,4-beta-mannosidase 9 (EC 3.2.1.78) (Beta-mannanase 9) (Endo-beta-1,4-mannanase 9) (OsMANP) (OsMan9),Os02g0766900 protein,Os10g0164700 protein Q0JKM9,Q6Z310,A0A0P0VQ05,A0A0P0XSQ6 MAN1_ORYSJ,MAN9_ORYSJ,A0A0P0VQ05_ORYSJ,A0A0P0XSQ6_ORYSJ MAN1 Os01g0663300 LOC_Os01g47400 P0671D01.40,MAN9 Os02g0766900 LOC_Os02g52800 OJ1004_A11.22 P0539D10.41,Os02g0766900 OSNPB_020766900,Os10g0164700 OSNPB_100164700 ENOG411DVPE CYP73A5 P92994 TCMO_ARATH Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (C4H) (CA4H) (Cytochrome P450 73) (Cytochrome P450C4H) accumulate decreased levels of several different classes of phenylpropanoid end-products and exhibit reduced lignin deposition and altered lignin monomer content; accumulate a novel hydroxycinnamic ester cinnamoylmalate which is not found in the wild type; pleiotropic phenotypes includ dwarfism male sterility and the development of swellings at branch junctions. Dwarf; Increased branching; Thick lateral branch bases; Male sterile due to indehiscent anthers-C. Chapple-2009 FUNCTION: Controls carbon flux to pigments essential for pollination or UV protection, to numerous pytoalexins synthesized by plants when challenged by pathogens, and to lignins. PATHWAY: Phenylpropanoid metabolism; trans-4-coumarate biosynthesis; trans-4-coumarate from trans-cinnamate: step 1/1. MetaCyc:AT2G30490-MONOMER; 1.14.13.11 57792 Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (C4H) (CA4H) (Cytochrome P450 73) (Cytochrome P450C4H) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; heme binding [GO:0020037]; identical protein binding [GO:0042802]; iron ion binding [GO:0005506]; trans-cinnamate 4-monooxygenase activity [GO:0016710]; developmental process [GO:0032502]; growth [GO:0040007]; lignin metabolic process [GO:0009808]; phenylpropanoid metabolic process [GO:0009698]; pollen development [GO:0009555]; response to karrikin [GO:0080167]; ubiquinone biosynthetic process [GO:0006744] locus:2064402; AT2G30490 trans-cinnamate Cinnamate-4-hydroxylase (Os05g0320700 protein) (Putative cinnamate-4-hydroxylase) (cDNA clone:001-002-H11, full insert sequence) (cDNA clone:J023107C01, full insert sequence),Os01g0820000 protein (Fragment) Q5W6F1,A0A0P0V9R1 Q5W6F1_ORYSJ,A0A0P0V9R1_ORYSJ OsC4HL Os05g0320700 OsJ_18060 OSJNBb0006B22.11 OSNPB_050320700,Os01g0820000 OSNPB_010820000 ENOG411DVPB Q9FK51 AGLUP_ARATH ADP-glucose phosphorylase (EC 2.7.7.-) (ADP-glucose:phosphate adenylyltransferase) FUNCTION: Catalyzes the conversion of ADP-glucose and inorganic phosphate (Pi) into glucose-1-phosphate and ADP. Does not possess galactose-1-phosphate uridylyltransferase activity. {ECO:0000269|PubMed:16519510}. MISCELLANEOUS: Functions by a double-displacement chemical mechanism and ping-pong kinetics through a covalent nucleotidyl-enzyme intermediate. {ECO:0000269|PubMed:16519510}. ARA:AT5G18200-MONOMER; R-ATH-70370; Galactose metabolism (00052),Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Metabolic pathways (01100) 2.7.7.- 39005 ADP-glucose phosphorylase (EC 2.7.7.-) (ADP-glucose:phosphate adenylyltransferase) ADP binding [GO:0043531]; nucleotidyltransferase activity [GO:0016779]; ribose-5-phosphate adenylyltransferase activity [GO:0047345]; UDP-glucose:hexose-1-phosphate uridylyltransferase activity [GO:0008108]; zinc ion binding [GO:0008270]; carbohydrate metabolic process [GO:0005975]; galactose catabolic process via UDP-galactose [GO:0033499]; glucose metabolic process [GO:0006006]; positive regulation of cellular response to phosphate starvation [GO:0080040] locus:2172359; AT5G18200 galactose-1-phosphate Os07g0171200 protein (Fragment) A0A0P0X2W8 A0A0P0X2W8_ORYSJ Os07g0171200 OSNPB_070171200 ENOG411DVPC JMJ30,JMJD5 Q8RWR1,A0A1I9LR61,A0A178VNS0,F4JET6 JMJ30_ARATH,A0A1I9LR61_ARATH,A0A178VNS0_ARATH,F4JET6_ARATH Lysine-specific demethylase JMJ30 (AtJMJ30) (EC 1.14.11.-) (JmjC domain-containing protein 30) (Jumonji domain-containing protein 5) (AtJMJD5),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have a short-period circadian phenotype. {ECO:0000269|PubMed:21115819, ECO:0000269|PubMed:21139085}. Abnormal circadian rhythms in leaf movements-E. Tobin-2011 FUNCTION: Histone demethylase that demethylates 'Lys-36' (H3K36me) of histone H3 with a specific activity for H3K36me3 and H3K36me2 (PubMed:25132385). No activity on H3K36me1 (PubMed:25132385). Involved in the control of flowering time by demethylating H3K36me2 at the FT locus and repressing its expression (PubMed:25132385). Acts within the central clock. Works in concert with TOC1 to promote the morning-phased clock genes CCA1 and LHY which function as components of the central oscillator. {ECO:0000269|PubMed:21115819, ECO:0000269|PubMed:21139085, ECO:0000269|PubMed:25132385}. MISCELLANEOUS: Plants over-expressing JMJD5 show delayed flowering. {ECO:0000305|PubMed:21139085}. R-ATH-3214842; 1.14.11.- 48075,40540,36947,44660 Lysine-specific demethylase JMJ30 (AtJMJ30) (EC 1.14.11.-) (JmjC domain-containing protein 30) (Jumonji domain-containing protein 5) (AtJMJD5),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; histone methyltransferase activity (H3-K36 specific) [GO:0046975]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; flower development [GO:0009908]; histone H3-K36 demethylation [GO:0070544]; regulation of circadian rhythm [GO:0042752] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, inflorescences and siliques. {ECO:0000269|PubMed:18713399}. locus:2091861; AT3G20810 lysine-specific demethylase Os08g0508500 protein,Os09g0489200 protein A0A0P0XHH9,A0A0P0XPI1 A0A0P0XHH9_ORYSJ,A0A0P0XPI1_ORYSJ Os08g0508500 OSNPB_080508500,Os09g0489200 OSNPB_090489200 ENOG411DVP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA powdery mildew resistant protein 5 Os01g0217000 protein (cDNA clone:001-203-B01, full insert sequence),Os01g0217000 protein Q5QNK8,Q5QNK9 Q5QNK8_ORYSJ,Q5QNK9_ORYSJ P0515G01.44-1 Os01g0217000 P0665D10.3-1 OSNPB_010217000,P0515G01.44-2 P0665D10.3-2 Os01g0217000 OSNPB_010217000 ENOG411DVP9 Q9SV83,P0DKI6 Y4103_ARATH,Y1332_ARATH Probable receptor-like protein kinase At4g10390 (EC 2.7.11.1),Probable receptor-like protein kinase At1g33260 (EC 2.7.11.1) 2.7.11.1 37786,38581 Probable receptor-like protein kinase At4g10390 (EC 2.7.11.1),Probable receptor-like protein kinase At1g33260 (EC 2.7.11.1) ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; response to wounding [GO:0009611],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2122834; AT4G10390,AT1G33260 receptor-like protein kinase OSJNBa0011L07.13 protein (Os04g0540900 protein) (cDNA clone:J013061M19, full insert sequence),Os02g0648100 protein (Putative serine/threonine-specific protein kinase) Q7XR88,Q6H6T1 Q7XR88_ORYSJ,Q6H6T1_ORYSJ Os04g0540900 OsJ_15629 OSJNBa0011L07.13 OSNPB_040540900,Os02g0648100 Os02g0648100 OSNPB_020648100 P0048B08.2 P0519A12.33 ENOG411DVP6 TSB2,TSB1 P25269,P14671 TRBP2_ARATH,TRPB1_ARATH Tryptophan synthase beta chain 2, chloroplastic (EC 4.2.1.20),Tryptophan synthase beta chain 1, chloroplastic (EC 4.2.1.20) Seedling lethal without exogenous tryptophan-R. Last-1991 FUNCTION: The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5. ARA:AT4G27070-MONOMER;,ARA:AT5G54810-MONOMER;MetaCyc:AT5G54810-MONOMER; 4.2.1.20; 4.2.1.20 51601,50926 Tryptophan synthase beta chain 2, chloroplastic (EC 4.2.1.20),Tryptophan synthase beta chain 1, chloroplastic (EC 4.2.1.20) chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; tryptophan synthase activity [GO:0004834]; tryptophan biosynthetic process [GO:0000162],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plasma membrane [GO:0005886]; protein domain specific binding [GO:0019904]; tryptophan synthase activity [GO:0004834]; indoleacetic acid biosynthetic process [GO:0009684]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651] locus:2005543;,locus:2160190; AT4G27070,AT5G54810 tryptophan synthase Tryptophan synthase (EC 4.2.1.20),Tryptophan synthase (EC 4.2.1.20) (Fragment),Os08g0135900 protein (Fragment) Q6YYB9,A0A0P0XBI6,A0A0N7KP88 Q6YYB9_ORYSJ,A0A0P0XBI6_ORYSJ,A0A0N7KP88_ORYSJ Os08g0135900 Os08g0135900 OJ1613_G04.6 OsJ_25962 OSNPB_080135900 P0680F05.45,Os08g0135900 OSNPB_080135900 ENOG411DVP7 O82329,F4IHF0 O82329_ARATH,F4IHF0_ARATH MAR-binding filament-like protein (Uncharacterized protein At2g14910),MAR-binding filament-like protein 43396,41013 MAR-binding filament-like protein (Uncharacterized protein At2g14910),MAR-binding filament-like protein aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; tRNA aminoacylation for protein translation [GO:0006418] locus:2060495; AT2G14910 seed maturation protein PM23 Os03g0607500 protein (Fragment) Q0DQD5 Q0DQD5_ORYSJ Os03g0607500 Os03g0607500 OSNPB_030607500 ENOG411DVP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os02g0308400 protein (Putative fasciclin-like arabinogalactan-protein) (cDNA clone:006-209-H01, full insert sequence) (cDNA clone:006-302-B07, full insert sequence) (cDNA clone:006-306-F07, full insert sequence) (cDNA clone:006-310-C03, full insert sequence) (cDNA clone:006-311-C06, full insert sequence) Q6Z0W5 Q6Z0W5_ORYSJ Os02g0308400 OsJ_06411 OSJNBb0026D20.17 OSNPB_020308400 ENOG411DVP5 MEE13.6 Q9FGC3,Q8GXZ5,A0A1P8BFN3 Q9FGC3_ARATH,Q8GXZ5_ARATH,A0A1P8BFN3_ARATH Protein kinase family protein (Serine/threonine protein kinase-like),At5g18910 (Protein kinase superfamily protein) (Uncharacterized protein At5g18910/F17K4_160),Protein kinase family protein 48684,57948,44911 Protein kinase family protein (Serine/threonine protein kinase-like),At5g18910 (Protein kinase superfamily protein) (Uncharacterized protein At5g18910/F17K4_160),Protein kinase family protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],peroxisome [GO:0005777]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2162848;,locus:2144970; AT5G35960,AT5G18910 receptor-like cytosolic serine threonine-protein kinase RBK2-like NA NA NA NA NA NA NA ENOG411DVP2 AVT3B,AVT3A,AVT3C F4ILY9,Q9FKY3,Q9SVG0 AVT3B_ARATH,AVT3A_ARATH,AVT3C_ARATH Amino acid transporter AVT3B (AtAvt3B) (Aromatic and neutral amino acid transporter-like protein 1),Amino acid transporter AVT3A (AtAvt3A) (Aromatic and neutral amino acid transporter-like protein 3),Amino acid transporter AVT3C (AtAvt3C) (Aromatic and neutral amino acid transporter-like protein 2) FUNCTION: Translocates preferentially neutral amino acids from the vacuole to the cytoplasm. {ECO:0000269|PubMed:27925655}.,FUNCTION: Translocates preferentially neutral amino acids and to a lesser extent aromatic amino acids from the vacuole to the cytoplasm. Requires ATP for function. {ECO:0000269|PubMed:27925655}. R-ATH-352230;R-ATH-428559;R-ATH-71240; 44962,46249,47211 Amino acid transporter AVT3B (AtAvt3B) (Aromatic and neutral amino acid transporter-like protein 1),Amino acid transporter AVT3A (AtAvt3A) (Aromatic and neutral amino acid transporter-like protein 3),Amino acid transporter AVT3C (AtAvt3C) (Aromatic and neutral amino acid transporter-like protein 2) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; neutral amino acid transmembrane transporter activity [GO:0015175]; amino acid transmembrane transport [GO:0003333]; neutral amino acid transport [GO:0015804],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; aromatic amino acid transmembrane transporter activity [GO:0015173]; neutral amino acid transmembrane transporter activity [GO:0015175]; amino acid transmembrane transport [GO:0003333]; aromatic amino acid transport [GO:0015801]; neutral amino acid transport [GO:0015804] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:27925655}. locus:504955913;,locus:2156862;,locus:2121733; AT2G42005,AT5G65990,AT4G38250 amino acid transporter OSJNBa0017B10.14 protein (Os04g0565500 protein) (cDNA clone:001-204-F10, full insert sequence) (cDNA clone:J023082L01, full insert sequence),Os04g0565500 protein,Os02g0670900 protein (Fragment),Os05g0575101 protein (Fragment) Q7XQJ4,Q0JAZ8,A0A0P0VMW4,A0A0P0VMU1,A0A0P0WRA0 Q7XQJ4_ORYSJ,Q0JAZ8_ORYSJ,A0A0P0VMW4_ORYSJ,A0A0P0VMU1_ORYSJ,A0A0P0WRA0_ORYSJ Os04g0565500 OSJNBa0017B10.14 OSNPB_040565500,Os04g0565500 Os04g0565500 OSNPB_040565500,Os02g0670900 OSNPB_020670900,Os05g0575101 OSNPB_050575101 ENOG411DVP3 Q9LW34,Q9LW35,F4JI53 Q9LW34_ARATH,Q9LW35_ARATH,F4JI53_ARATH Alcohol dehydrogenase-like protein (At3g26770/MDJ14_21) (NAD(P)-binding Rossmann-fold superfamily protein),Alcohol dehydrogenase-like protein (NAD(P)-binding Rossmann-fold superfamily protein) (Putative short chain alcohol dehydrogenase),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT3G26770-MONOMER;,ARA:AT3G26760-MONOMER; R-ATH-77111; 31784,31700,36827 Alcohol dehydrogenase-like protein (At3g26770/MDJ14_21) (NAD(P)-binding Rossmann-fold superfamily protein),Alcohol dehydrogenase-like protein (NAD(P)-binding Rossmann-fold superfamily protein) (Putative short chain alcohol dehydrogenase),NAD(P)-binding Rossmann-fold superfamily protein mitochondrion [GO:0005739]; zinc ion binding [GO:0008270],oxidoreductase activity [GO:0016491] locus:2088399;,locus:2088419;,locus:2125452; AT3G26770,AT3G26760,AT4G03140 Sex determination protein Os07g0664400 protein,NAD dependent epimerase/dehydratase family protein, expressed (Os11g0523110 protein) (cDNA clone:002-174-B12, full insert sequence) Q0D3V0,Q2R3G3 Q0D3V0_ORYSJ,Q2R3G3_ORYSJ Os07g0664400 Os07g0664400 OsJ_25480 OSNPB_070664400,Os11g0523110 LOC_Os11g32030 Os11g0523110 OSNPB_110523110 ENOG411DVP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Eukaryotic translation initiation factor 2B family protein, putative, expressed (Os03g0344600 protein) Q10LK9 Q10LK9_ORYSJ Os03g0344600 LOC_Os03g22410 OsJ_10810 OSNPB_030344600 ENOG411EJM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411EDG8 Q9ZW73 Q9ZW73_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g43220) 62437 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g43220) metal ion binding [GO:0046872] locus:2041056; AT2G43220 C1 domain NA NA NA NA NA NA NA ENOG411E6G1 Q1G309 Q1G309_ARATH Taximin 7850 Taximin integral component of membrane [GO:0016021] locus:4010713635; AT2G20562 NA NA NA NA NA NA NA NA ENOG411E6G3 MQN23.5 B4F7Q0,Q8VZV8,A0A1P8BDW3 B4F7Q0_ARATH,Q8VZV8_ARATH,A0A1P8BDW3_ARATH At5g65120 (DNA-directed RNA polymerase subunit beta),DNA-directed RNA polymerase subunit beta (Uncharacterized protein At5g10110),DNA-directed RNA polymerase subunit beta 34801,35566,25959 At5g65120 (DNA-directed RNA polymerase subunit beta),DNA-directed RNA polymerase subunit beta (Uncharacterized protein At5g10110),DNA-directed RNA polymerase subunit beta DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2171830;,locus:2184068; AT5G65120,AT5G10110 NA Os02g0752300 protein Q6Z8I6 Q6Z8I6_ORYSJ Os02g0752300 OJ1288_G09.3 OSNPB_020752300 P0431B06.44 ENOG411E6G8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0016O02.20 protein (Os04g0469300 protein) (cDNA, clone: J065186H01, full insert sequence),OSJNBa0016O02.17 protein (Os04g0469000 protein) (cDNA clone:001-107-E07, full insert sequence),Os04g0464100 protein (cDNA clone:J013129I02, full insert sequence) Q7XJV0,Q7XJV3,Q0JCK8 Q7XJV0_ORYSJ,Q7XJV3_ORYSJ,Q0JCK8_ORYSJ Os04g0469300 Os04g0469300 OsJ_15123 OSJNBa0016O02.20 OSNPB_040469300,Os04g0469000 OsJ_15120 OSJNBa0016O02.17 OSNPB_040469000,Os04g0464100 Os04g0464100 OSNPB_040464100 ENOG411EDG9 SAUR69 Q9LEU2 Q9LEU2_ARATH At5g10990 (SAUR-like auxin-responsive protein family) (Uncharacterized protein T30N20_260) 16863 At5g10990 (SAUR-like auxin-responsive protein family) (Uncharacterized protein T30N20_260) response to auxin [GO:0009733] locus:2183805; AT5G10990 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EJSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain NA NA NA NA NA NA NA ENOG411E6GW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411E6GS Q8S8H5,A0A1P8AZE1,F4IGJ2,A8MSD5 Q8S8H5_ARATH,A0A1P8AZE1_ARATH,F4IGJ2_ARATH,A8MSD5_ARATH At2g21195 (Expressed protein) (Uncharacterized protein At2g21195),Uncharacterized protein 10365,13085,11267,8547 At2g21195 (Expressed protein) (Uncharacterized protein At2g21195),Uncharacterized protein response to oxidative stress [GO:0006979] locus:505006263; AT2G21195 NA Os07g0265100 protein (cDNA clone:002-180-E01, full insert sequence) Q0D7C6 Q0D7C6_ORYSJ Os07g0265100 Os07g0265100 OsJ_23780 OSNPB_070265100 ENOG411E6GY Q9LIQ2 Q9LIQ2_ARATH Plant self-incompatibility protein S1 family 17277 Plant self-incompatibility protein S1 family integral component of membrane [GO:0016021] locus:2076091; AT3G24060 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411E6GH B3H578,B6EUC7 B3H578_ARATH,B6EUC7_ARATH RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At1g43770),RING/FYVE/PHD zinc finger superfamily protein 47901,40757 RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At1g43770),RING/FYVE/PHD zinc finger superfamily protein metal ion binding [GO:0046872] locus:2029147; AT1G43770 PHD NA NA NA NA NA NA NA ENOG411E6GI T31B5_130 Q9LYU5 Q9LYU5_ARATH Uncharacterized protein At5g13310 (Uncharacterized protein T31B5_130) 41056 Uncharacterized protein At5g13310 (Uncharacterized protein T31B5_130) locus:2183926; AT5G13310 NA NA NA NA NA NA NA NA ENOG411E6GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os02g0445600 protein (Fragment) A0A0P0VIK8 A0A0P0VIK8_ORYSJ Os02g0445600 OSNPB_020445600 ENOG411DX9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0556800 protein Q0IZQ0 Q0IZQ0_ORYSJ Os09g0556800 Os09g0556800 OsJ_30301 OSNPB_090556800 ENOG411EJVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial ribosomal protein L37 NA NA NA NA NA NA NA ENOG411EJVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Agenet domain NA NA NA NA NA NA NA ENOG411EJVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase III RPC4 NA NA NA NA NA NA NA ENOG411EJVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal recognition particle 14kD protein NA NA NA NA NA NA NA ENOG411EDYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EJVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XPC-binding domain NA NA NA NA NA NA NA ENOG411EJVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3598) NA NA NA NA NA NA NA ENOG411EJVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TspO/MBR family NA NA NA NA NA NA NA ENOG411EJVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EDYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0485150 protein A0A0N7KU17 A0A0N7KU17_ORYSJ Os12g0485150 OSNPB_120485150 ENOG411EJSR HDT2 Q56WH4 HDT2_ARATH Histone deacetylase HDT2 (HD-tuins protein 2) (Histone deacetylase 2b) FUNCTION: Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. {ECO:0000269|PubMed:12694598}. 32348 Histone deacetylase HDT2 (HD-tuins protein 2) (Histone deacetylase 2b) cell wall [GO:0005618]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; vacuolar membrane [GO:0005774]; histone deacetylase activity [GO:0004407]; DNA mediated transformation [GO:0009294]; negative regulation of transcription, DNA-templated [GO:0045892]; polarity specification of adaxial/abaxial axis [GO:0009944]; seed dormancy process [GO:0010162]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves, roots, stems, young plantlets, flowers and siliques. Highest levels in ovules, embryos, shoot apical meristems and first leaves. Also expressed in somatic embryos. {ECO:0000269|PubMed:10792817, ECO:0000269|PubMed:15144374}. locus:2162479; AT5G22650 NA NA NA NA NA NA NA NA ENOG411EFY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0655200 protein A0A0N7KDF7 A0A0N7KDF7_ORYSJ Os01g0655200 OSNPB_010655200 ENOG411E6P1 SAG20 Q94AK6 SAG20_ARATH Senescence associated gene 20 (Protein WOUND-INDUCED 12) (AtWI-12) 11464 Senescence associated gene 20 (Protein WOUND-INDUCED 12) (AtWI-12) aging [GO:0007568]; leaf senescence [GO:0010150]; response to fungus [GO:0009620]; response to molecule of fungal origin [GO:0002238]; response to nematode [GO:0009624]; response to ozone [GO:0010193] locus:1006230220; AT3G10985 wound-induced protein NA NA NA NA NA NA NA ENOG411E6P0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain Os09g0535700 protein,Os11g0584600 protein,Os06g0606401 protein,Os06g0669075 protein,Os01g0917700 protein Q69JZ3,A0A0P0Y3R7,A0A0P0WYF5,A0A0N7KMK3,A0A0P0VC22 Q69JZ3_ORYSJ,A0A0P0Y3R7_ORYSJ,A0A0P0WYF5_ORYSJ,A0A0N7KMK3_ORYSJ,A0A0P0VC22_ORYSJ P0569E11.9 Os09g0535700 OSNPB_090535700,Os11g0584600 OSNPB_110584600,Os06g0606401 OSNPB_060606401,Os06g0669075 OSNPB_060669075,Os01g0917700 OSNPB_010917700 ENOG411E6P3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E6P2 SAUR45 Q8L8B9 Q8L8B9_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein At2g36210/F2H17.18) 15036 SAUR-like auxin-responsive protein family (Uncharacterized protein At2g36210/F2H17.18) response to auxin [GO:0009733] locus:2049490; AT2G36210 auxin-induced protein 15A-like NA NA NA NA NA NA NA ENOG411E6P5 COPT4 Q8SAA5 COPT4_ARATH Copper transporter 4 (AtCOPT4) FUNCTION: Involved in the transport of copper. {ECO:0000250}. 16103 Copper transporter 4 (AtCOPT4) integral component of membrane [GO:0016021]; copper ion transmembrane transporter activity [GO:0005375] TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and flowers. {ECO:0000269|PubMed:12650623}. locus:504955905; AT2G37925 copper transporter NA NA NA NA NA NA NA ENOG411E6P4 Q9SKA6 Q9SKA6_ARATH Oxidoreductase/transition metal ion-binding protein (Uncharacterized protein At2g31940) 13758 Oxidoreductase/transition metal ion-binding protein (Uncharacterized protein At2g31940) integral component of membrane [GO:0016021] locus:2045203; AT2G31940 oxidoreductase transition metal ion binding protein Os09g0445600 protein (cDNA clone:002-133-H08, full insert sequence) Q67U49 Q67U49_ORYSJ Os09g0445600 Os09g0445600 OJ1123_B08.25 OSNPB_090445600 ENOG411E6P6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein Os09g0458800 protein,Os09g0458900 protein (cDNA, clone: J100087C15, full insert sequence) Q67J27,Q67J26 Q67J27_ORYSJ,Q67J26_ORYSJ Os09g0458800 Os09g0458800 B1045B05.23 OsJ_29638 OSJNBa0054F02.1 OSNPB_090458800,Os09g0458900 Os09g0458900 B1045B05.25 OsJ_29631 OsJ_29639 OSJNBa0054F02.3 OSNPB_090458900 ENOG411E6PC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 NA NA NA NA NA NA NA ENOG411E6PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6PD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0131300 protein (cDNA clone:J033079K23, full insert sequence) Q9LGB7 Q9LGB7_ORYSJ Os01g0131300 OSNPB_010131300 P0504H10.20 ENOG411E6PG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cornichon protein NA NA NA NA NA NA NA ENOG411E6PK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6PJ F4IQY1 F4IQY1_ARATH Forkhead box protein G1 13567 Forkhead box protein G1 integral component of membrane [GO:0016021] locus:2040661; AT2G37530 NA Os01g0151800 protein Q9LGI7 Q9LGI7_ORYSJ Os01g0151800 OSNPB_010151800 P0009G03.24 P0030H07.3 ENOG411E6PN Q1G3M2 LYRM9_ARATH LYR motif-containing protein At3g19508 9642 LYR motif-containing protein At3g19508 locus:4010713760; AT3G19508 UPF0631 protein Os01g0342800 protein (cDNA, clone: J065059I08, full insert sequence) Q8LQX1 Q8LQX1_ORYSJ Os01g0342800 Os01g0342800 B1045F02.18 OsJ_01647 OSNPB_010342800 ENOG411E6PQ Q9FKV7,Q3E8H9 Q9FKV7_ARATH,Q3E8H9_ARATH Late embryogenesis abundant protein (LEA) family protein (Late embryogenesis abundant protein-like),Late embryogenesis abundant protein (LEA) family protein 37159,33361 Late embryogenesis abundant protein (LEA) family protein (Late embryogenesis abundant protein-like),Late embryogenesis abundant protein (LEA) family protein locus:2158735; AT5G44310 late embryogenesis abundant domain-containing protein OSJNBa0085I10.12 protein (Os04g0610600 protein) Q7XPL4 Q7XPL4_ORYSJ Os04g0610600 Os04g0610600 OsJ_16115 OSJNBa0085I10.12 OSNPB_040610600 ENOG411E6PP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6PS SPL4,SPL5 Q9S7A9,Q9S758,A0A1P8ASL5 SPL4_ARATH,SPL5_ARATH,A0A1P8ASL5_ARATH Squamosa promoter-binding-like protein 4,Squamosa promoter-binding-like protein 5,Squamosa promoter-binding-like protein FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. 20120,20992,19740 Squamosa promoter-binding-like protein 4,Squamosa promoter-binding-like protein 5,Squamosa promoter-binding-like protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; regulation of vegetative phase change [GO:0010321]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Increases during floral transition and stay high thereafter. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. TISSUE SPECIFICITY: Expressed in the rib meristem and inter-primordial tissue of the inflorescence apex. {ECO:0000269|PubMed:10524240}.,TISSUE SPECIFICITY: Expressed in the inflorescence apical meristem and young flowers. {ECO:0000269|PubMed:10524240}. locus:2009675;,locus:2087105; AT1G53160,AT3G15270 squamosa promoter binding protein-like 5 NA NA NA NA NA NA NA ENOG411E6PR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6PU Q9M8Y7 Q9M8Y7_ARATH T6K12.7 protein (Transmembrane protein) 30807 T6K12.7 protein (Transmembrane protein) integral component of membrane [GO:0016021] locus:2103090; AT3G04310 NA NA NA NA NA NA NA NA ENOG411E6PT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0146800 protein Q5VP46 Q5VP46_ORYSJ Os06g0146800 Os06g0146800 OSNPB_060146800 P0036F10.22 ENOG411E6PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (By similarity) Putative auxin-responsive protein IAA28 (Indoleacetic acid-induced protein 28),Putative auxin-responsive protein IAA29 (Indoleacetic acid-induced protein 29) P0C130,P0C131 IAA28_ORYSJ,IAA29_ORYSJ IAA28 Os11g0221200 LOC_Os11g11420,IAA29 Os11g0221300 LOC_Os11g11430 OsJ_33398 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. MISCELLANEOUS: Lacks the EAR-like motif (domain I) which is conserved in the Aux/IAA family. ENOG411E6PZ SIS Q9LZM9,B9DFG6 Q9LZM9_ARATH,B9DFG6_ARATH AT5g02020/T7H20_70 (E3 ubiquitin-protein ligase RLIM-like protein) (Uncharacterized protein T7H20_70),AT5G02020 protein (E3 ubiquitin-protein ligase RLIM-like protein) 16124,14822 AT5g02020/T7H20_70 (E3 ubiquitin-protein ligase RLIM-like protein) (Uncharacterized protein T7H20_70),AT5G02020 protein (E3 ubiquitin-protein ligase RLIM-like protein) ligase activity [GO:0016874]; response to salt stress [GO:0009651],ligase activity [GO:0016874] locus:2185168; AT5G02020 NA NA NA NA NA NA NA NA ENOG411EDYP ALIS5,ALIS4 Q8L8W0,Q9SA35,A0A1P8AN88,A0A1P8AN80,A0A1P8AN78 ALIS5_ARATH,ALIS4_ARATH,A0A1P8AN88_ARATH,A0A1P8AN80_ARATH,A0A1P8AN78_ARATH ALA-interacting subunit 5 (AtALIS5),Putative ALA-interacting subunit 4 (AtALIS4),LEM3 (Ligand-effect modulator 3) family protein / CDC50 family protein FUNCTION: Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex. {ECO:0000250, ECO:0000269|PubMed:20053675}. R-ATH-6798695; 38909,38072,27266,38875,39284 ALA-interacting subunit 5 (AtALIS5),Putative ALA-interacting subunit 4 (AtALIS4),LEM3 (Ligand-effect modulator 3) family protein / CDC50 family protein endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18344284}.,TISSUE SPECIFICITY: Expressed in flowers. May be restricted to pollen grains. {ECO:0000269|PubMed:18344284}. locus:2206400;,locus:2032780; AT1G79450,AT1G16360 LEM3 (ligand-effect modulator 3) family protein NA NA NA NA NA NA NA ENOG411EDYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411DTZX SWC4 Q8VZL6 SWC4_ARATH SWR1-complex protein 4 FUNCTION: Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. 49824 SWR1-complex protein 4 NuA4 histone acetyltransferase complex [GO:0035267]; nucleus [GO:0005634]; Swr1 complex [GO:0000812]; DNA binding [GO:0003677]; transcription corepressor activity [GO:0003714]; chromatin remodeling [GO:0006338]; DNA repair [GO:0006281]; histone H2A acetylation [GO:0043968]; histone H4 acetylation [GO:0043967]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] locus:2065150; AT2G47210 DNA methyltransferase 1-associated protein Os05g0540800 protein,Os05g0540800 protein (Fragment) Q5TKQ2,A0A0P0WQ95 Q5TKQ2_ORYSJ,A0A0P0WQ95_ORYSJ Os05g0540800 Os05g0540800 OJ1362_G11.6 OSNPB_050540800,Os05g0540800 OSNPB_050540800 ENOG411DTZY UMAMIT1,UMAMIT3,UMAMIT2 Q5PP32,Q8W4R9,F4KD68,A0A1P8BCG3,A0A1I9LS27,A0A1P8B9A8,A0A1I9LS24,A0A1I9LS25,A0A1I9LS29,A0A1I9LS26,A0A1I9LS23 WTR25_ARATH,WTR35_ARATH,WTR43_ARATH,A0A1P8BCG3_ARATH,A0A1I9LS27_ARATH,A0A1P8B9A8_ARATH,A0A1I9LS24_ARATH,A0A1I9LS25_ARATH,A0A1I9LS29_ARATH,A0A1I9LS26_ARATH,A0A1I9LS23_ARATH WAT1-related protein At3g45870,WAT1-related protein At4g19185,WAT1-related protein At5g45370,WAT1-related protein,Nodulin MtN21 /EamA-like transporter family protein 41880,42876,41030,29836,27665,34385,30715,17105,22663,33828,35717 WAT1-related protein At3g45870,WAT1-related protein At4g19185,WAT1-related protein At5g45370,WAT1-related protein,Nodulin MtN21 /EamA-like transporter family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2077162;,locus:505006500;,locus:2163513; AT3G45870,AT4G19185,AT5G45370 auxin-induced protein WAT1-related protein,Os06g0708700 protein (Fragment) Q6YVJ1,Q5Z9H6,A0A0P0X116 Q6YVJ1_ORYSJ,Q5Z9H6_ORYSJ,A0A0P0X116_ORYSJ Os02g0703900 OSNPB_020703900 P0724B10.23,P0655A07.7-1 P0621D05.47-1 Os06g0708700 OsJ_22616 OSNPB_060708700,Os06g0708700 OSNPB_060708700 ENOG411DTZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family E3 ubiquitin-protein ligase (EC 2.3.2.27) Q60EU0,Q5NAX7,Q6KAC3 Q60EU0_ORYSJ,Q5NAX7_ORYSJ,Q6KAC3_ORYSJ Os05g0238200 Os05g0238200 OJ1122_B08.8 OSNPB_050238200,Os01g0234900 OSNPB_010234900 P0702F03.27,Os02g0293400 Os02g0293400 OJ1057_D08.24 OSNPB_020293400 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411DTZS MXH1.3 Q8VYQ7 Q8VYQ7_ARATH Uncharacterized protein At5g35690 (Zinc metalloproteinase-like protein) 67743 Uncharacterized protein At5g35690 (Zinc metalloproteinase-like protein) locus:2177286; AT5G35690 WLM domain Os08g0500800 protein (Zinc metalloproteinase-like) (cDNA clone:J033034G12, full insert sequence) Q6ZK12 Q6ZK12_ORYSJ Os08g0500800 OJ1345_D02.6 OSNPB_080500800 ENOG411DTZP SEOC Q9FXE2 SEOC_ARATH Protein SIEVE ELEMENT OCCLUSION C (AtSEOc) 77122 Protein SIEVE ELEMENT OCCLUSION C (AtSEOc) locus:2008590; AT1G67790 NA NA NA NA NA NA NA NA ENOG411DTZQ Q53YF3,Q9MA96,F4J781 SPC3B_ARATH,SPC3A_ARATH,F4J781_ARATH Signal peptidase complex subunit 3B (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) (SPC22) (SPase 22 kDa subunit),Signal peptidase complex subunit 3A (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) (SPC22) (SPase 22 kDa subunit),Signal peptidase subunit FUNCTION: Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. {ECO:0000250}.,FUNCTION: Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. {ECO:0000256|PIRNR:PIRNR016089}. 3.4.-.- 19218,19019,15353 Signal peptidase complex subunit 3B (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) (SPC22) (SPase 22 kDa subunit),Signal peptidase complex subunit 3A (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) (SPC22) (SPase 22 kDa subunit),Signal peptidase subunit cell wall [GO:0005618]; integral component of membrane [GO:0016021]; organelle membrane [GO:0031090]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; protein targeting to ER [GO:0045047]; signal peptide processing [GO:0006465],cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; organelle membrane [GO:0031090]; plasmodesma [GO:0009506]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; protein targeting to ER [GO:0045047]; signal peptide processing [GO:0006465],integral component of membrane [GO:0016021]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; signal peptide processing [GO:0006465] locus:2146345;,locus:2096229; AT5G27430,AT3G05230 Signal peptidase Os09g0556100 protein,Signal peptidase complex subunit 3 (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) A3C1D7,B9G505 A3C1D7_ORYSJ,B9G505_ORYSJ Os09g0556100 OsJ_30294 OSNPB_090556100,Os09g0556000 OsJ_30293 OSNPB_090556000 FUNCTION: Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. {ECO:0000256|PIRNR:PIRNR016089}. ENOG411DTZN AGT2 Q940M2,A0A1P8B5L9 AGT21_ARATH,A0A1P8B5L9_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 1),Alanine:glyoxylate aminotransferase 2 ARA:AT4G39660-MONOMER; R-ATH-389661; 2.6.1.44 51953,43331 Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 1),Alanine:glyoxylate aminotransferase 2 membrane [GO:0016020]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; alanine-glyoxylate transaminase activity [GO:0008453]; identical protein binding [GO:0042802]; pyridoxal phosphate binding [GO:0030170]; zinc ion binding [GO:0008270]; arginine catabolic process to glutamate [GO:0019544]; photorespiration [GO:0009853]; response to cadmium ion [GO:0046686],pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483] locus:2135237; AT4G39660 aminotransferase 2 Alanine-glyoxylate aminotransferase 2, mitochondrial, putative, expressed (Os03g0171900 protein) (cDNA clone:006-206-E11, full insert sequence) Q10R45 Q10R45_ORYSJ Os03g0171900 LOC_Os03g07570 Os03g0171900 OsJ_09593 OSNPB_030171900 ENOG411DTZM SPCH Q700C7,A0A1P8BE01 SPCH_ARATH,A0A1P8BE01_ARATH Transcription factor SPEECHLESS (Basic helix-loop-helix protein 98) (AtbHLH98) (bHLH 98) (Transcription factor EN 19) (bHLH transcription factor bHLH098),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein Does not express MUTE transcripts.,Stomataless. No asymmetric divisions to create the stomatal lineage are made. Plants arrest as small pale seedlings. Pale green seedlings; Complete loss of stomata-D. Bergmann-2007 FUNCTION: Transcription factor. Together with FMA and MUTE, regulates the stomata formation. Required for the initiation and the formation of stomata, by promoting the first asymmetric cell divisions. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. 40169,38768 Transcription factor SPEECHLESS (Basic helix-loop-helix protein 98) (AtbHLH98) (bHLH 98) (Transcription factor EN 19) (bHLH transcription factor bHLH098),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; stomatal complex development [GO:0010374]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] DEVELOPMENTAL STAGE: First observed in a subset of undifferentiated epidermal cells, often by pair of neighboring cells. Later confined to small epidermal cells, including cells that have recently divided next to stomatal lineage cells. Also expressed in stomatal lineage cells. {ECO:0000269|PubMed:17183265}. TISSUE SPECIFICITY: Expressed in developing leaf epidermis. {ECO:0000269|PubMed:17183265}. locus:2154197; AT5G53210 Transcription factor Basic helix-loop-helix-like (Os02g0257500 protein),Os06g0526100 protein Q6ETQ5,A0A0P0WXG4 Q6ETQ5_ORYSJ,A0A0P0WXG4_ORYSJ P0613F08.25 Os02g0257500 OSNPB_020257500,Os06g0526100 OSNPB_060526100 ENOG411DTZK Q9SSR4 PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620 92104 Pentatricopeptide repeat-containing protein At1g52620 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2035124; AT1G52620 Pentatricopeptide repeat-containing protein Os12g0135051 protein A0A0P0Y6P3 A0A0P0Y6P3_ORYSJ Os12g0135051 OSNPB_120135051 ENOG411DTZH TOUSLED Q39238 TSL_ARATH Serine/threonine-protein kinase TOUSLED (EC 2.7.11.1) Abnormal flower morphology-P. Zambryski-1993 FUNCTION: Required for correct initiation of floral organ primordia and for proper development of organ primordia. Phosphorylates in vitro ASF1B/SGA1, the C-terminal part of TKI1 and histone H3. {ECO:0000269|PubMed:15047893, ECO:0000269|PubMed:8252629}. 2.7.11.1 78149 Serine/threonine-protein kinase TOUSLED (EC 2.7.11.1) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; protein serine/threonine kinase activity [GO:0004674]; regulation of RNA interference [GO:1900368] DEVELOPMENTAL STAGE: Expressed at constant level during the cell cycle. {ECO:0000269|PubMed:15047893}. TISSUE SPECIFICITY: Most abundant in developing floral meristem. Also expressed in maturing flowers, developing seeds, mature leaves and roots. Barely detected in stems. {ECO:0000269|PubMed:8252629}. locus:2147087; AT5G20930 serine threonine-protein kinase Os03g0749800 protein (Tousled-like kinase 2, putative, expressed),Os03g0749800 protein (Tousled-like kinase 2, putative, expressed) (cDNA clone:J013098L24, full insert sequence) Q10CU0,Q10CU2 Q10CU0_ORYSJ,Q10CU2_ORYSJ Os03g0749800 LOC_Os03g53880 OSNPB_030749800,LOC_Os03g53880 Os03g0749800 OsJ_12579 OSNPB_030749800 ENOG411DTZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain Os09g0503100 protein (cDNA clone:002-141-C04, full insert sequence),Os09g0503000 protein (Fragment),Os09g0502500 protein (cDNA clone:002-144-E03, full insert sequence) Q0J0N7,Q0J0N8,Q0J0P9 Q0J0N7_ORYSJ,Q0J0N8_ORYSJ,Q0J0P9_ORYSJ Os09g0503100 Os09g0503100 OSNPB_090503100,Os09g0503000 OSNPB_090503000,Os09g0502500 Os09g0502500 OSNPB_090502500 ENOG411DTZB PCMP-E47 Q9ZQ74 PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 76685 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2063771; AT2G03380 pentatricopeptide repeat-containing protein At2g03380 Os06g0185700 protein (Fragment) A0A0P0WTW7 A0A0P0WTW7_ORYSJ Os06g0185700 OSNPB_060185700 ENOG411ECVZ Q9ZUI8 WTR9_ARATH WAT1-related protein At1g60050 41135 WAT1-related protein At1g60050 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2202745; AT1G60050 EamA-like transporter family NA NA NA NA NA NA NA ENOG411ECVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411ECVY Q9CAA5 PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980, mitochondrial 69850 Pentatricopeptide repeat-containing protein At1g68980, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2205440; AT1G68980 repeat-containing protein NA NA NA NA NA NA NA ENOG411ECVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: pyridine nucleotide-disulphide oxidoreductase domain 2 NA NA NA NA NA NA NA ENOG411ECVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tify domain NA NA NA NA NA NA NA ENOG411ECVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECVU O82761,O48787 O82761_ARATH,O48787_ARATH Cupredoxin superfamily protein (Plastocyanin-like domain-containing protein) (Putative blue copper-binding protein),Cupredoxin superfamily protein (Putative phytocyanin) 21475,22384 Cupredoxin superfamily protein (Plastocyanin-like domain-containing protein) (Putative blue copper-binding protein),Cupredoxin superfamily protein (Putative phytocyanin) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2052866;,locus:2043833; AT2G31050,AT2G26720 domain-containing protein NA NA NA NA NA NA NA ENOG411ECVJ DTX26,DTX28 Q1PDX9,Q9FNC1 DTX26_ARATH,DTX28_ARATH Protein DETOXIFICATION 26 (AtDTX26) (Multidrug and toxic compound extrusion protein 26) (MATE protein 26),Protein DETOXIFICATION 28 (AtDTX28) (Multidrug and toxic compound extrusion protein 28) (MATE protein 28) R-ATH-425366; 53589,54720 Protein DETOXIFICATION 26 (AtDTX26) (Multidrug and toxic compound extrusion protein 26) (MATE protein 26),Protein DETOXIFICATION 28 (AtDTX28) (Multidrug and toxic compound extrusion protein 28) (MATE protein 28) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:2142544;,locus:2172477; AT5G10420,AT5G44050 Mate efflux family protein NA NA NA NA NA NA NA ENOG411ECVK F4JK59 WTR33_ARATH WAT1-related protein At4g15540 37998 WAT1-related protein At4g15540 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2130344; AT4G15540 EamA-like transporter family NA NA NA NA NA NA NA ENOG411ECVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os08g0170100 protein,Os06g0524900 protein (RGH1A-like) (cDNA clone:J033105O17, full insert sequence),Os08g0170500 protein,Os08g0170700 protein (Fragment),Os09g0249950 protein,Os08g0169900 protein Q0J7R1,Q654T3,B9FZA5,A0A0N7KPC3,A0A0P0XJH4,A0A0P0XD14 Q0J7R1_ORYSJ,Q654T3_ORYSJ,B9FZA5_ORYSJ,A0A0N7KPC3_ORYSJ,A0A0P0XJH4_ORYSJ,A0A0P0XD14_ORYSJ Os08g0170100 Os08g0170100 OSNPB_080170100,OJ1616_B03.30-1 Os06g0524900 OSNPB_060524900,Os08g0170500 OsJ_26200 OSNPB_080170500,Os08g0170700 OSNPB_080170700,Os09g0249950 OSNPB_090249950,Os08g0169900 OSNPB_080169900 ENOG411ECVI PERK15 Q9C821,A0A1P8AWI5 PEK15_ARATH,A0A1P8AWI5_ARATH Proline-rich receptor-like protein kinase PERK15 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 15) (AtPERK15),Protein kinase superfamily protein 2.7.11.1 55659,42009 Proline-rich receptor-like protein kinase PERK15 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 15) (AtPERK15),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Mostly expressed in inflorescence bolts, and, to a lower extent, in flower buds and siliques. {ECO:0000269|PubMed:15653807}. locus:2018209; AT1G52290 STYKc NA NA NA NA NA NA NA ENOG411ECVN BHLH150 Q9M9L6 BH150_ARATH Transcription factor bHLH150 (ATBS1 interacting factor 1) (Basic helix-loop-helix protein 150) (AtbHLH150) (bHLH 150) (Transcription factor EN 145) (bHLH transcription factor bHLH150) FUNCTION: Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269|PubMed:20023194}. 23185 Transcription factor bHLH150 (ATBS1 interacting factor 1) (Basic helix-loop-helix protein 150) (AtbHLH150) (bHLH 150) (Transcription factor EN 145) (bHLH transcription factor bHLH150) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2074484; AT3G05800 transcription factor NA NA NA NA NA NA NA ENOG411ECVM B9DH46,Q6NLG5,Q9XI71,Q84MA6 B9DH46_ARATH,Q6NLG5_ARATH,Q9XI71_ARATH,Q84MA6_ARATH AT1G14170 protein (RNA-binding KH domain-containing protein),At2g03110 (Putative RNA-binding protein),F7A19.25 protein (RNA-binding KH domain-containing protein),At1g14170 (RNA-binding KH domain-containing protein) (Uncharacterized protein At1g14170) 48912,17376,52540,49769 AT1G14170 protein (RNA-binding KH domain-containing protein),At2g03110 (Putative RNA-binding protein),F7A19.25 protein (RNA-binding KH domain-containing protein),At1g14170 (RNA-binding KH domain-containing protein) (Uncharacterized protein At1g14170) RNA binding [GO:0003723],mRNA binding [GO:0003729]; response to abscisic acid [GO:0009737] locus:2056951;,locus:2035807; AT1G14170,AT2G03110 KH domain NA NA NA NA NA NA NA ENOG411ECVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione peroxidase Glutathione peroxidase A0A0P0WGL5 A0A0P0WGL5_ORYSJ Os04g0683850 OSNPB_040683850 ENOG411ECV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B_lectin NA NA NA NA NA NA NA ENOG411ECV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XRN 5'-3' exonuclease N-terminus NA NA NA NA NA NA NA ENOG411ECV2 Q9C706,A0A1P8ASI4,A0A1P8ASI1 Q9C706_ARATH,A0A1P8ASI4_ARATH,A0A1P8ASI1_ARATH Protein kinase superfamily protein (Protein kinase, putative),Protein kinase superfamily protein 52492,39046,55678 Protein kinase superfamily protein (Protein kinase, putative),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2028967; AT1G66460 STYKc NA NA NA NA NA NA NA ENOG411ECV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411ECV0 LHT1 Q9FKS8,Q9C733,A0A1R7T3D5 LHT1_ARATH,LHTL1_ARATH,A0A1R7T3D5_ARATH Lysine histidine transporter 1,Lysine histidine transporter-like 1 DISRUPTION PHENOTYPE: Lower biomass at the time of harvest, but no visible phenotype until bolting. Decreased uptake of L-histidine, L-glutamine, glutamic acid, L-serine, glycine, L-asparagine, aspartic acid, L-proline and L- or D-alanine. {ECO:0000269|PubMed:16816136, ECO:0000269|PubMed:17293438, ECO:0000269|PubMed:18681934}. Leaf chlorosis; Resistant to toxic D-alanine; Resistant to bacterial and fungal infection-Y. Wei-2010 FUNCTION: Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots. {ECO:0000269|PubMed:16816136, ECO:0000269|PubMed:17293438, ECO:0000269|PubMed:18681934, ECO:0000269|PubMed:9390441}.,FUNCTION: Amino acid transporter. {ECO:0000250}. 49814,50449,44253 Lysine histidine transporter 1,Lysine histidine transporter-like 1 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]; amino acid import [GO:0043090]; response to karrikin [GO:0080167],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, leaves, siliques and pollen. Found in the tips of roots and in the rhizodermis of emerging roots and in lateral roots. Higher expression in older leaves as compared to joung leaves. Detected first at the hydathodes, then in the epidermis and finally in matures leaves in all mesophyll cells. Not detected in vascular bundles or in seeds. {ECO:0000269|PubMed:16816136, ECO:0000269|PubMed:9390441}. locus:2154815;,locus:2008154; AT5G40780,AT1G48640 lysine histidine transporter NA NA NA NA NA NA NA ENOG411ECV1 PERK7 Q9XI96 PERK7_ARATH Proline-rich receptor-like protein kinase PERK7 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 7) (AtPERK7) 2.7.11.1 74329 Proline-rich receptor-like protein kinase PERK7 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 7) (AtPERK7) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Mostly expressed in flower buds. {ECO:0000269|PubMed:15653807}. locus:2010282; AT1G49270 STYKc NA NA NA NA NA NA NA ENOG411ECV6 NAKR3 Q8RXH8 NAKR3_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 3 (NaKR3) (Heavy metal-associated plant protein 4) (AtHPP04) FUNCTION: Heavy metal-associated protein involved in salt tolerance. {ECO:0000269|PubMed:26909945}. 26153 Protein SODIUM POTASSIUM ROOT DEFECTIVE 3 (NaKR3) (Heavy metal-associated plant protein 4) (AtHPP04) cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2083966; AT3G53530 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411ECV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os09g0381800 protein (Os09g0381900 protein) (Fragment),Os09g0382120 protein,Os09g0381850 protein (Fragment) C7J6M2,A0A0P0XL75,A0A0P0XMM5 C7J6M2_ORYSJ,A0A0P0XL75_ORYSJ,A0A0P0XMM5_ORYSJ Os09g0381900 Os09g0381800 OSNPB_090381800,Os09g0382120 OSNPB_090382120,Os09g0381850 OSNPB_090381850 ENOG411ECV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411ECV5 DTX52 Q4PSF4 DTX52_ARATH Protein DETOXIFICATION 52 (AtDTX52) (Multidrug and toxic compound extrusion protein 52) (MATE protein 52) (Protein ABNORMAL SHOOT 3-like 2) FUNCTION: May act as a negative regulator of hypocotyl cell elongation in the light. {ECO:0000269|PubMed:26160579}. MISCELLANEOUS: Overexpression of DTX52 alters shoot developmental programs leading to a loss of apical dominance phenotype. {ECO:0000269|PubMed:26160579}. R-ATH-425366; 54327 Protein DETOXIFICATION 52 (AtDTX52) (Multidrug and toxic compound extrusion protein 52) (MATE protein 52) (Protein ABNORMAL SHOOT 3-like 2) integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855]; iron ion homeostasis [GO:0055072]; leaf senescence [GO:0010150]; root morphogenesis [GO:0010015] TISSUE SPECIFICITY: Detected in the part of the veins in cotyledons of 6-day-old seedlings and the basal parts of the petioles in older plants. Highly expressed in the vascular tissues of hypocotyl in dark-grown seedlings. {ECO:0000269|PubMed:26160579}. locus:2183169; AT5G19700 MatE NA NA NA NA NA NA NA ENOG411E4Z3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S1 NA NA NA NA NA NA NA ENOG411EHAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0234433 protein (Fragment),Os02g0783050 protein,Os01g0312600 protein (Fragment),Os01g0788451 protein (Fragment),Os01g0880350 protein (Fragment),Os09g0545550 protein (Fragment),Os04g0641250 protein (Fragment),Os01g0254350 protein,Os07g0675133 protein (Fragment) A0A0P0V0L4,A0A0N7KG77,A0A0P0V1P5,A0A0P0V936,A0A0P0VB53,A0A0P0XQ23,A0A0P0WFI2,A0A0P0V0W0,A0A0P0XA54 A0A0P0V0L4_ORYSJ,A0A0N7KG77_ORYSJ,A0A0P0V1P5_ORYSJ,A0A0P0V936_ORYSJ,A0A0P0VB53_ORYSJ,A0A0P0XQ23_ORYSJ,A0A0P0WFI2_ORYSJ,A0A0P0V0W0_ORYSJ,A0A0P0XA54_ORYSJ Os01g0234433 OSNPB_010234433,Os02g0783050 OSNPB_020783050,Os01g0312600 OSNPB_010312600,Os01g0788451 OSNPB_010788451,Os01g0880350 OSNPB_010880350,Os09g0545550 OSNPB_090545550,Os04g0641250 OSNPB_040641250,Os01g0254350 OSNPB_010254350,Os07g0675133 OSNPB_070675133 ENOG411EFGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0518266 protein A0A0N7KR44 A0A0N7KR44_ORYSJ Os09g0518266 OSNPB_090518266 ENOG411EHAI A0A1P8AQP2 A0A1P8AQP2_ARATH Uncharacterized protein 7198 Uncharacterized protein NA NA NA NA NA NA NA NA ENOG411EJGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial regulatory helix-turn-helix protein lysR family NA NA NA NA NA NA NA ENOG411EJGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKT A9,MTG10.3 Q00762,Q8GT78 A9_ARATH,Q8GT78_ARATH Tapetum-specific protein A9,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative A9 protein) 9283,9779 Tapetum-specific protein A9,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Putative A9 protein) extracellular region [GO:0005576] DEVELOPMENTAL STAGE: Found when sporogenous cells are in early meiosis. Disappears totally as the microspores go into interphase, when the tapetal cell layer degenerates. TISSUE SPECIFICITY: Tapetum of anthers. locus:2182910;,locus:2174018; AT5G07230,AT5G62080 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EJGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EHKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Papain family cysteine protease Os03g0295200 protein Q10MU5 Q10MU5_ORYSJ Os03g0295200 LOC_Os03g18390 OsJ_10473 OSNPB_030295200 ENOG411EEB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pept_C1 NA NA NA NA NA NA NA ENOG411EEBH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EEBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM NA NA NA NA NA NA NA ENOG411E4SF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger Os06g0284500 protein (Putative dof zinc finger protein) Q5VNE4 Q5VNE4_ORYSJ Os06g0284500 Os06g0284500 OSNPB_060284500 P0491D10.21 ENOG411E4SD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4SM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1313) EARLY flowering 4 protein, putative, expressed (Expressed protein) (Os03g0410300 protein) (cDNA clone:006-301-C05, full insert sequence) (cDNA clone:J023117M08, full insert sequence) Q75K38 Q75K38_ORYSJ Os03g0410300 LOC_Os03g29680 Os03g0410300 OSJNBb0108E08.15 OSNPB_030410300 ENOG411EJMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411DRI1 Q8LFA9 METL2_ARATH Methyltransferase-like protein 2 (EC 2.1.1.-) FUNCTION: Probable methyltransferase. {ECO:0000250}. 2.1.1.- 47893 Methyltransferase-like protein 2 (EC 2.1.1.-) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; site-specific DNA-methyltransferase (adenine-specific) activity [GO:0009007] locus:2016462; AT1G19340 Methyltransferase-like protein Os03g0198900 protein A0A0P0VU92 A0A0P0VU92_ORYSJ Os03g0198900 OSNPB_030198900 ENOG411DRI0 Q494P8,A0A1P8B4P1,A0A1P8B4N5,F4JSY2 Q494P8_ARATH,A0A1P8B4P1_ARATH,A0A1P8B4N5_ARATH,F4JSY2_ARATH ARM repeat superfamily protein (At4g38120),ARM repeat superfamily protein 52124,129474,118966,129400 ARM repeat superfamily protein (At4g38120),ARM repeat superfamily protein vacuolar membrane [GO:0005774] locus:2120928; AT4G38120 Inherit from KOG: HEAT repeat containing 6 Os08g0152900 protein (Fragment) A0A0N7KPA3 A0A0N7KPA3_ORYSJ Os08g0152900 OSNPB_080152900 ENOG411DRI3 F4K2L8 F4K2L8_ARATH Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 30369 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021] locus:2183244; AT5G19750 Mpv17 PMP22 family protein expressed Os12g0127900 protein,Os11g0131200 protein B9GBN8,A0A0P0XYD9 B9GBN8_ORYSJ,A0A0P0XYD9_ORYSJ Os12g0127900 OsJ_35092 OSNPB_120127900,Os11g0131200 OSNPB_110131200 ENOG411DRI2 APSR1 F4J3B2,A0A178VBJ0,F4J3B3 F4J3B2_ARATH,A0A178VBJ0_ARATH,F4J3B3_ARATH Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) 89179,71722,70901 Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) intracellular [GO:0005622]; membrane [GO:0016020]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; methyltransferase activity [GO:0008168]; small GTPase mediated signal transduction [GO:0007264],methyltransferase activity [GO:0008168] locus:2080868; AT3G51290 Protein of unknown function (DUF632) Os09g0538700 protein A0A0P0XQP5 A0A0P0XQP5_ORYSJ Os09g0538700 OSNPB_090538700 ENOG411DRI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinesterase Pectinesterase (EC 3.1.1.11) Q2QNI9 Q2QNI9_ORYSJ LOC_Os12g37660 Os12g0563700 OSNPB_120563700 ENOG411DRI4 LPA3 Q8H0W0 LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic DISRUPTION PHENOTYPE: Pale-green phenotype and greatly reduced growth. Lpa2 and lpa3 double mutant is seedling lethal. {ECO:0000269|PubMed:20605914}. Slow growth; Pale green-L. Zhang-2010 FUNCTION: Involved in assisting chlorophyll a binding protein psbC assembly within photosystem II (PSII). Works cooperatively with LPA2. {ECO:0000269|PubMed:20605914}. 40029 Protein LOW PSII ACCUMULATION 3, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; proplastid stroma [GO:0009571]; photosystem II assembly [GO:0010207]; response to cytokinin [GO:0009735] locus:2032662; AT1G73060 Domain of unknown function (DUF1995) Os02g0117100 protein Q6ZGM0 Q6ZGM0_ORYSJ Os02g0117100 OJ1442_E05.24 OsJ_05126 OSNPB_020117100 ENOG411DRI7 NRPA2 F4I366 NRPA2_ARATH DNA-directed RNA polymerase I subunit 2 (DNA-directed RNA polymerase I subunit RPA2) (DNA polymerase I subunit A2) (EC 2.7.7.6) (Nuclear RNA polymerase A2) DISRUPTION PHENOTYPE: Defect in seed production due to female gametophyte developmental arrest. {ECO:0000269|PubMed:18723889}. Complete female gametophyte defective; Male gametophyte defective-C. Pikaard-2008 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol I is composed of mobile elements and NRPA2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. {ECO:0000250|UniProtKB:P22138}.; FUNCTION: Essential for the completion of the three rounds of mitosis in female megaspores required for the development of mature gametophytes. {ECO:0000269|PubMed:18723889}. Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 2.7.7.6 132381 DNA-directed RNA polymerase I subunit 2 (DNA-directed RNA polymerase I subunit RPA2) (DNA polymerase I subunit A2) (EC 2.7.7.6) (Nuclear RNA polymerase A2) cytosol [GO:0005829]; DNA-directed RNA polymerase I complex [GO:0005736]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; ribonucleoside binding [GO:0032549]; megagametogenesis [GO:0009561]; ribosome biogenesis [GO:0042254]; transcription from RNA polymerase I promoter [GO:0006360] locus:2019272; AT1G29940 DNA-directed RNA Polymerase Os10g0495600 protein A0A0P0XVR4 A0A0P0XVR4_ORYSJ Os10g0495600 OSNPB_100495600 ENOG411DRI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant zinc cluster domain Os08g0235800 protein (Fragment) A0A0P0XDH4 A0A0P0XDH4_ORYSJ Os08g0235800 OSNPB_080235800 ENOG411DRI9 O80763 NRX1_ARATH Probable nucleoredoxin 1 (AtNrx1) (EC 1.8.1.8) DISRUPTION PHENOTYPE: Disruption of pollen tube growth in the pistil and reduction in the ability to target ovules. {ECO:0000269|PubMed:19714218}. FUNCTION: Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil. {ECO:0000269|PubMed:19714218}. 1.8.1.8 65170 Probable nucleoredoxin 1 (AtNrx1) (EC 1.8.1.8) cytosol [GO:0005829]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; pollen tube growth [GO:0009860]; pollen tube guidance [GO:0010183]; regulation of pollen tube growth [GO:0080092]; response to cadmium ion [GO:0046686] locus:2195623; AT1G60420 Nucleoredoxin Probable nucleoredoxin 1-2 (OsNrx1-2) (EC 1.8.1.8),Probable nucleoredoxin 1-1 (OsNrx1-1) (EC 1.8.1.8),Os11g0221400 protein,Os03g0405500 protein (Fragment) Q7Y0F2,Q7Y0E8,A0A0P0Y0A6,A0A0P0VZB8 NRX12_ORYSJ,NRX11_ORYSJ,A0A0P0Y0A6_ORYSJ,A0A0P0VZB8_ORYSJ Os03g0405900 LOC_Os03g29240 OsJ_11208 OSJNBa0002D18.22 OSJNBb0074M06.3,Os03g0405500 LOC_Os03g29190 OsJ_11206 OSJNBb0074M06.8,Os11g0221400 OSNPB_110221400,Os03g0405500 OSNPB_030405500 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411DRI8 UPP Q9M336 UPP_ARATH Uracil phosphoribosyltransferase, chloroplastic (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase) DISRUPTION PHENOTYPE: Growth retardation, pale-green to albino phenotype and flimsy roots with less branching. Loss of uracil phosphoribosyltransferase activity. {ECO:0000269|PubMed:19563437}. dramatic growth retardation; pale green to albino; flimsy roots with less branching; chloroplastic disorder. Seedling lethal without exogenous sucrose; Dwarf; Pale green to albino; Few lateral roots; Fragile roots-J. Renou-2009 FUNCTION: Uracil phosphoribosyltransferase (UPRT) that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate. Is probably the only functional UPRT, since the dual-domain proteins of the UKL family seem to lack this activity. {ECO:0000269|PubMed:19563437}. PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1. ARA:AT3G53900-MONOMER;MetaCyc:AT3G53900-MONOMER; 2.4.2.9; 2.4.2.9 32195 Uracil phosphoribosyltransferase, chloroplastic (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; plastid [GO:0009536]; GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845]; uridine kinase activity [GO:0004849]; cellular response to phosphate starvation [GO:0016036]; developmental process [GO:0032502]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097]; UMP salvage [GO:0044206]; uracil salvage [GO:0006223] DEVELOPMENTAL STAGE: Slightly induced 12 days after germination. {ECO:0000269|PubMed:19413687}. locus:2084385; AT3G53900 uracil phosphoribosyltransferase Os05g0455700 protein (Putative uracil phosphoribosyltransferase) (cDNA clone:001-025-D08, full insert sequence) (cDNA clone:J023069E03, full insert sequence) (cDNA clone:J023069E05, full insert sequence) Q60EM2 Q60EM2_ORYSJ Os05g0455700 OJ1651_D06.11 OSNPB_050455700 ENOG411DUB0 Q8VZR8,F4JL78 Q8VZR8_ARATH,F4JL78_ARATH Formin-like protein (DUF1421) (Putative proline-rich protein),Formin-like protein (DUF1421) 54107,47993 Formin-like protein (DUF1421) (Putative proline-rich protein),Formin-like protein (DUF1421) locus:2123693; AT4G28300 Hydroxyproline-rich glycoprotein family protein Os01g0754500 protein (Putative calcium-binding protein) (cDNA clone:J033066K05, full insert sequence),Os01g0754500 protein (Fragment) Q5JML5,A0A0P0V8E5 Q5JML5_ORYSJ,A0A0P0V8E5_ORYSJ Os01g0754500 Os01g0754500 OSNPB_010754500 P0503C12.20,Os01g0754500 OSNPB_010754500 ENOG411DUB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A32 (Alpha-expansin-32) (OsEXP32) (OsEXPA32) (OsaEXPa1.30) Q6YYW5 EXP32_ORYSJ EXPA32 EXP32 Os08g0561900 LOC_Os08g44790 P0543D10.5 P0604E01.45 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DRIA Q9SHH1,Q9ZW25,A8MR03 Q9SHH1_ARATH,Q9ZW25_ARATH,A8MR03_ARATH At1g17130 (Coiled-coil protein (DUF572)) (F20D23.18 protein) (Uncharacterized protein At1g17130),Coiled-coil protein (DUF572) (Uncharacterized protein At2g29430),Coiled-coil protein (DUF572) 37638,9499,38476 At1g17130 (Coiled-coil protein (DUF572)) (F20D23.18 protein) (Uncharacterized protein At1g17130),Coiled-coil protein (DUF572) (Uncharacterized protein At2g29430),Coiled-coil protein (DUF572) locus:2043102;,locus:2020367; AT1G17130,AT2G29430 Coiled-coil domain-containing protein Os01g0588700 protein (cDNA clone:J013059D18, full insert sequence),Os01g0588600 protein Q0JLM7,Q5ZBQ4 Q0JLM7_ORYSJ,Q5ZBQ4_ORYSJ Os01g0588700 Os01g0588700 OSNPB_010588700,Os01g0588600 Os01g0588600 OSNPB_010588600 P0700A11.28 ENOG411DRIC Q9ZVX5 PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880 83768 Pentatricopeptide repeat-containing protein At2g16880 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2039415; AT2G16880 Pentatricopeptide repeat-containing protein Os03g0201300 protein (Os03g0201400 protein) (Salt-inducible protein, putative, expressed) Q10QC8 Q10QC8_ORYSJ Os03g0201400 LOC_Os03g10420 Os03g0201300 OSNPB_030201400 ENOG411DRIB GALAK,GalAK Q8VYG2,A0A1I9LP32,A0A1I9LP31 GALAK_ARATH,A0A1I9LP32_ARATH,A0A1I9LP31_ARATH Galacturonokinase (EC 2.7.1.44) (D-galacturonic acid-1-P kinase),Galacturonic acid kinase FUNCTION: Sugar-1-kinase with a strict substrate specificity for the alpha-anomeric configuration of D-galacturonic acid (D-GalA) and ATP. Involved in the biosynthesis of UDP-galacturonic acid (UDP-GalA) from the salvaged GalA that is released during growth-dependent cell wall restructuring. {ECO:0000269|PubMed:19509290}. ARA:AT3G10700-MONOMER; 2.7.1.44; Galactose metabolism (00052),Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Metabolic pathways (01100) 2.7.1.44 45729,38568,34272 Galacturonokinase (EC 2.7.1.44) (D-galacturonic acid-1-P kinase),Galacturonic acid kinase cytosol [GO:0005829]; ATP binding [GO:0005524]; galactose binding [GO:0005534]; galacturonokinase activity [GO:0047912]; metal ion binding [GO:0046872]; carbohydrate phosphorylation [GO:0046835]; D-galacturonate metabolic process [GO:0046396]; galactose metabolic process [GO:0006012],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; galactokinase activity [GO:0004335]; galactose binding [GO:0005534]; galactose metabolic process [GO:0006012] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and young siliques. Higher expression in the elongating middle stem region than in the lower or upper stem region. {ECO:0000269|PubMed:19509290}. locus:2075730; AT3G10700 galactokinase (EC 2.7.1.6) Os04g0608100 protein (cDNA clone:J023021M07, full insert sequence),Os04g0608100 protein (Fragment) Q0JAB2,A0A0P0WEH3 Q0JAB2_ORYSJ,A0A0P0WEH3_ORYSJ Os04g0608100 Os04g0608100 OSNPB_040608100,Os04g0608100 OSNPB_040608100 ENOG411DRIE F4IPJ1,F4JPL1,F4JPL2,F4JPL0 F4IPJ1_ARATH,F4JPL1_ARATH,F4JPL2_ARATH,F4JPL0_ARATH Phosphatidylinositol 3-and 4-kinase family protein with FAT domain-containing protein,Phosphotransferases/inositol or phosphatidylinositol kinase R-ATH-5689880; 436353,430487,433595,430001 Phosphatidylinositol 3-and 4-kinase family protein with FAT domain-containing protein,Phosphotransferases/inositol or phosphatidylinositol kinase histone acetyltransferase complex [GO:0000123]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; kinase activity [GO:0016301]; DNA repair [GO:0006281]; histone acetylation [GO:0016573],histone acetyltransferase complex [GO:0000123]; kinase activity [GO:0016301]; histone acetylation [GO:0016573],cytosol [GO:0005829]; histone acetyltransferase complex [GO:0000123]; nucleus [GO:0005634]; kinase activity [GO:0016301]; DNA repair [GO:0006281]; histone acetylation [GO:0016573] locus:2060933;,locus:504955359; AT2G17930,AT4G36080 Transformation transcription domain-associated protein Os07g0645100 protein (Fragment),Os07g0645200 protein (Fragment) Q0D457,A0A0P0X9F5 Q0D457_ORYSJ,A0A0P0X9F5_ORYSJ Os07g0645100 Os07g0645100 OSNPB_070645100,Os07g0645200 OSNPB_070645200 ENOG411DRID Q45GJ7 Q45GJ7_ARATH Expressed protein (Transmembrane protein) 64133 Expressed protein (Transmembrane protein) integral component of membrane [GO:0016021]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2135748; AT4G12680 NA Os06g0300500 protein (Fragment) A0A0P0WVL1 A0A0P0WVL1_ORYSJ Os06g0300500 OSNPB_060300500 ENOG411DRIG DCP5-L Q9FH77,A0A1P8BGW8 DCP5L_ARATH,A0A1P8BGW8_ARATH Decapping 5-like protein FUNCTION: As a component of the decapping complex, involved in the degradation of mRNAs. Promotes P-body formation. Translational repressor (By similarity). {ECO:0000250}. 61799,55113 Decapping 5-like protein P-body [GO:0000932]; protein homodimerization activity [GO:0042803]; deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; mRNA processing [GO:0006397]; negative regulation of translation [GO:0017148]; positive regulation of cytoplasmic mRNA processing body assembly [GO:0010606] locus:2158470; AT5G45330 Pfam:FFD_TFG NA NA NA NA NA NA NA ENOG411DRIF AUX1,LAX2,LAX1 Q96247,Q9S836,Q9LFB2,A0A1P8B1Q8,F4K7Z8 AUX1_ARATH,LAX2_ARATH,LAX1_ARATH,A0A1P8B1Q8_ARATH,F4K7Z8_ARATH Auxin transporter protein 1 (Auxin influx carrier protein 1) (Polar auxin transport inhibitor-resistant protein 1),Auxin transporter-like protein 2 (AUX1-like protein 2),Auxin transporter-like protein 1 (AUX1-like protein 1),Transmembrane amino acid transporter family protein,Like AUXIN RESISTANT 1 Root agravitropic phenotype.,auxin resistant; narrow irregular rosette leaves slightly curled around leaf axis; roots elongate on auxin-containing medium; defective root gravitropism; reduced number of lateral roots - greater reduction than for either single mutant; dwarf bushy plants; reduced plant height; ethylene resistant; reduced fertility.,Partial root gravitropic phenotype.,Reduction in AUX1 mRNA level. Abnormal root gravitropism; Root growth insensitive to auxin-K. Feldmann-1996 FUNCTION: Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex. Unloads auxin from the mature phloem to deliver the hormone to the root meristem via the protophloem cell files. Coordinated subcellular localization of AUX1 is regulated by a brefeldin A-sensitive (BFA) vesicle trafficking process. Involved in lateral root formation, trichoblast polarization and root hair elongation. Required for gravitropism and thigmotropism, especially in roots, by modulating responses to auxin, ethylene and cytokinins such as benzyladenine (BA). Needed for ammonium-mediated root-growth inhibition. Confers sensitivity to the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog), and to polar auxin transport inhibitors such as N-1-naphthylphthalamic acid (NPA) and 2,3,5-triiodobenzoic acid (TIBA). {ECO:0000269|PubMed:10036773, ECO:0000269|PubMed:10205161, ECO:0000269|PubMed:11260496, ECO:0000269|PubMed:11266581, ECO:0000269|PubMed:11536712, ECO:0000269|PubMed:11641271, ECO:0000269|PubMed:11864575, ECO:0000269|PubMed:11910006, ECO:0000269|PubMed:12481073, ECO:0000269|PubMed:15486104, ECO:0000269|PubMed:16667854, ECO:0000269|PubMed:7768447, ECO:0000269|PubMed:8278539, ECO:0000269|PubMed:8688077, ECO:0000269|PubMed:9032965, ECO:0000269|PubMed:9484486, ECO:0000269|PubMed:9697346, ECO:0000269|Ref.10, ECO:0000269|Ref.18, ECO:0000269|Ref.6, ECO:0000269|Ref.8}.,FUNCTION: Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex (By similarity). {ECO:0000250}. 54060,54703,54601,45776,46101 Auxin transporter protein 1 (Auxin influx carrier protein 1) (Polar auxin transport inhibitor-resistant protein 1),Auxin transporter-like protein 2 (AUX1-like protein 2),Auxin transporter-like protein 1 (AUX1-like protein 1),Transmembrane amino acid transporter family protein,Like AUXIN RESISTANT 1 cell surface [GO:0009986]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; auxin binding [GO:0010011]; auxin influx transmembrane transporter activity [GO:0010328]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; establishment of planar polarity [GO:0001736]; lateral root formation [GO:0010311]; positive gravitropism [GO:0009958]; response to nematode [GO:0009624]; root cap development [GO:0048829]; root hair cell differentiation [GO:0048765],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333]; auxin-activated signaling pathway [GO:0009734]; cotyledon vascular tissue pattern formation [GO:0010588]; response to nematode [GO:0009624]; root cap development [GO:0048829],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; auxin influx transmembrane transporter activity [GO:0010328]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333]; auxin-activated signaling pathway [GO:0009734]; root cap development [GO:0048829],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: In seedlings, first expressed in primary root, followed by shoot apical meristem and then in lateral roots. During lateral root formation, expression in primordia starts at a late phase of stage I, before the first periclinal division. In later stages II and III, localized in the apical tip, extending to the elongation zone, and in the vascular cylinder extending to the junction with the primary root. {ECO:0000269|PubMed:11910006}. TISSUE SPECIFICITY: Expressed in root and shoot apical tissues. In root apex, confined to stele initials, protophloem poles, statolith-containing S2 columella cells, lateral root cap cells (LRC), and in epidermal cells from the distal elongation zone (DEZ) up to central elongation zone (CEZ). {ECO:0000269|PubMed:10205161, ECO:0000269|PubMed:11641271, ECO:0000269|PubMed:8688077}. locus:2005496;,locus:2047102;,locus:2150089; AT2G38120,AT2G21050,AT5G01240 auxin transporter-like protein Auxin transporter-like protein 2,Auxin transporter-like protein 1,Os01g0856500 protein (Fragment) Q688J2,Q5N892,A0A0N7KE33,A0A0P0VAQ3 LAX12_ORYSJ,LAX11_ORYSJ,A0A0N7KE33_ORYSJ,A0A0P0VAQ3_ORYSJ Os05g0447200 LOC_Os05g37470 OSJNBb0012G21.5,Os01g0856500 LOC_Os01g63770 OJ1402_H07.23-1 OJ1402_H07.23-2 OsJ_04119,Os01g0856500 OSNPB_010856500 FUNCTION: Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity). {ECO:0000250}. ENOG411DRII BRO1 F4HXZ1 BRO1_ARATH Vacuolar-sorting protein BRO1 (BRO domain-containing protein 1) (AtBRO1) DISRUPTION PHENOTYPE: Seedlings lethality. Severe vacuole biogenesis defects. {ECO:0000269|PubMed:26324913, ECO:0000269|PubMed:26342016, ECO:0000269|PubMed:26902184}. FUNCTION: Class E VPS protein involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles. Fusion between endosomes and the vacuole will then target the cargo proteins to the vacuolar lumen (Probable). Associates with FREE1 and ELC to perform function in the ESCRT-I complex. Binds ubiquitin in vitro (PubMed:26902184). Plays a role in the biogenesis of vacuole and multivesicular bodies (MVBs) (PubMed:26342016, PubMed:26324913). Required for the endosomal location of AMSH3 (PubMed:26324913). Mediates high-affinity phosphate transporter trafficking to maintain phosphate homeostasis. Regulates vacuolar degradation of PHT1-1 (PubMed:26342016). {ECO:0000269|PubMed:26324913, ECO:0000269|PubMed:26342016, ECO:0000269|PubMed:26902184, ECO:0000305|PubMed:26342016}. 95209 Vacuolar-sorting protein BRO1 (BRO domain-containing protein 1) (AtBRO1) cytoplasm [GO:0005737]; cytosol [GO:0005829]; late endosome [GO:0005770]; multivesicular body [GO:0005771]; plasmodesma [GO:0009506]; protein self-association [GO:0043621]; ubiquitin binding [GO:0043130]; multivesicular body organization [GO:0036257]; protein transport [GO:0015031]; vacuole organization [GO:0007033] locus:2037693; AT1G15130 ALG-2 interacting protein Hydroxyproline-rich glycoprotein family protein, putative, expressed (Os10g0495300 protein) (Putative signal tranduction protein),Os10g0495300 protein (Fragment) Q8LNU2,A0A0P0XW71,A0A0P0XVR5 Q8LNU2_ORYSJ,A0A0P0XW71_ORYSJ,A0A0P0XVR5_ORYSJ OSJNBa0041P03.2 Os10g0495300 LOC_Os10g35250 OSNPB_100495300,Os10g0495300 OSNPB_100495300 ENOG411DRIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os07g0496300 protein C7J599 C7J599_ORYSJ Os07g0496300 Os07g0496300 OSNPB_070496300 ENOG411DRIK SPMS,SPDS3 Q94BN2,A0A1R7T3F8,F4KJ05 SPSY_ARATH,A0A1R7T3F8_ARATH,F4KJ05_ARATH Spermine synthase (SPMSY) (EC 2.5.1.22) (Spermidine aminopropyltransferase),Spermidine synthase 3 PATHWAY: Amine and polyamine biosynthesis; spermine biosynthesis; spermine from spermidine: step 1/1. R-ATH-351202; 2.5.1.22 39239,41261,42234 Spermine synthase (SPMSY) (EC 2.5.1.22) (Spermidine aminopropyltransferase),Spermidine synthase 3 spermine synthase activity [GO:0016768]; spermine biosynthetic process [GO:0006597],transferase activity [GO:0016740]; polyamine biosynthetic process [GO:0006596],cytoplasm [GO:0005737]; spermidine synthase activity [GO:0004766]; spermine synthase activity [GO:0016768]; defense response to bacterium [GO:0042742]; polyamine biosynthetic process [GO:0006596]; spermine biosynthetic process [GO:0006597] TISSUE SPECIFICITY: Expressed predominantly in stem internodes, flower buds and roots. {ECO:0000269|PubMed:12220656}. locus:2163771; AT5G53120 spermidine synthase Aminopropyl transferase (Os06g0528600 protein) (cDNA clone:J013105J05, full insert sequence),Os02g0254700 protein Q7XAP2,A0A0P0VH43 Q7XAP2_ORYSJ,A0A0P0VH43_ORYSJ OsSPDS2 Os06g0528600 OsJ_21549 OSNPB_060528600 P0001B01.29,Os02g0254700 OSNPB_020254700 ENOG411DRIJ dl4930w Q8L586,O23619,Q9C8W8,F4IBM1 Y4958_ARATH,O23619_ARATH,Q9C8W8_ARATH,F4IBM1_ARATH Uncharacterized membrane protein At4g09580,SNARE associated Golgi protein family (Uncharacterized protein At4g17790) (Uncharacterized protein dl4930w),At1g71940/F17M19_9 (SNARE associated Golgi protein family) (Uncharacterized protein F17M19.9),SNARE associated Golgi protein family 32139,28926,30457,34634 Uncharacterized membrane protein At4g09580,SNARE associated Golgi protein family (Uncharacterized protein At4g17790) (Uncharacterized protein dl4930w),At1g71940/F17M19_9 (SNARE associated Golgi protein family) (Uncharacterized protein F17M19.9),SNARE associated Golgi protein family endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] locus:2136927;,locus:2129485;,locus:2016059; AT4G09580,AT4G17790,AT1G71940 SNARE associated Golgi protein Expressed protein (Gtk16 protein, putative, expressed) (Os03g0703900 protein) (cDNA clone:J033073B06, full insert sequence) Q75IA4 Q75IA4_ORYSJ OSJNBa0004L11.6 LOC_Os03g49700 Os03g0703900 OSNPB_030703900 ENOG411DRIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - OsWAK receptor-like protein kinase expressed Calcium binding EGF domain containing protein, expressed (Os10g0180800 protein),Calcium binding EGF domain containing protein, expressed (Os10g0180800 protein) (cDNA clone:J013116L16, full insert sequence),OSJNBa0027H09.1 protein (Os04g0127500 protein) (cDNA clone:J033099P12, full insert sequence),Calcium binding EGF domain containing protein, expressed (Os03g0841100 protein),Os10g0180800 protein (Fragment),Os04g0310400 protein,Os04g0367000 protein,Os10g0178800 protein Q10A19,Q33AH5,Q7XP38,Q10AU5,A0A0P0XS59,A0A0P0W8R9,A0A0P0W9H7,A0A0P0XT92 Q10A19_ORYSJ,Q33AH5_ORYSJ,Q7XP38_ORYSJ,Q10AU5_ORYSJ,A0A0P0XS59_ORYSJ,A0A0P0W8R9_ORYSJ,A0A0P0W9H7_ORYSJ,A0A0P0XT92_ORYSJ Os10g0180800 LOC_Os10g10130 OSNPB_100180800,LOC_Os10g10130 Os10g0180800 OSNPB_100180800,Os04g0127500 Os04g0127500 OsJ_13614 OSJNBa0027H09.1 OSNPB_040127500,Os03g0841100 LOC_Os03g62430 Os03g0841100 OSNPB_030841100,Os10g0180800 OSNPB_100180800,Os04g0310400 OSNPB_040310400,Os04g0367000 OSNPB_040367000,Os10g0178800 OSNPB_100178800 ENOG411DRIN CLPS3 Q9SR06 CLP1_ARATH Protein CLP1 homolog (CLP-like protein 3) (Protein CLP-SIMILAR PROTEIN 3) Homozygous clps3-1 mutants cannot be generated. Reciprocal crosses using the gametes from a clps3-1 heterozygote indicate that wild-type and clps3-1 pollen are equally efficient in fertilizing wild type plants. But there is roughly a 50% reduction in transmission of the clps3-1 mutant female gametophyte. No embryo development can be observed in a presumed homozygote indicating lethality at a very early stage after fertilization. Expression of 35S:CLPS3:TAP rescues the embryo lethality phenotype. Embryo defective; Female gametophyte defective-Q. Li-2008 FUNCTION: Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation (By similarity). Functions in gametophyte, embryo and postembryotic development (PubMed:18971429). {ECO:0000255|HAMAP-Rule:MF_03035, ECO:0000269|PubMed:18298670, ECO:0000269|PubMed:18971429}. R-ATH-72163; 48421 Protein CLP1 homolog (CLP-like protein 3) (Protein CLP-SIMILAR PROTEIN 3) mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]; ATP binding [GO:0005524]; polynucleotide 5'-hydroxyl-kinase activity [GO:0051731]; flower development [GO:0009908]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; mRNA processing [GO:0006397]; phyllome development [GO:0048827]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2084938; AT3G04680 Protein CLP1 homolog Protein CLP1 homolog Q6Z6M0 Q6Z6M0_ORYSJ Os02g0217500 OSNPB_020217500 P0027A02.1 FUNCTION: Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation. {ECO:0000256|HAMAP-Rule:MF_03035}. ENOG411DRIQ HGO Q9ZRA2 HGD_ARATH Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisate oxygenase) (Homogentisic acid oxidase) (Homogentisicase) PATHWAY: Amino-acid degradation; L-phenylalanine degradation; acetoacetate and fumarate from L-phenylalanine: step 4/6. ARA:AT5G54080-MONOMER; R-ATH-71182; 1.13.11.5; Tyrosine metabolism (00350),Microbial metabolism in diverse environments (01120),Styrene degradation (00643),Metabolic pathways (01100) 1.13.11.5 51455 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisate oxygenase) (Homogentisic acid oxidase) (Homogentisicase) cytosol [GO:0005829]; homogentisate 1,2-dioxygenase activity [GO:0004411]; metal ion binding [GO:0046872]; homogentisate catabolic process [GO:1902000]; L-phenylalanine catabolic process [GO:0006559]; tyrosine catabolic process [GO:0006572] locus:2166567; AT5G54080 homogentisate 12-dioxygenase Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisate oxygenase) (Homogentisic acid oxidase) (Homogentisicase),Os06g0103300 protein (Fragment) Q5VRH4,A0A0P0WR78 HGD_ORYSJ,A0A0P0WR78_ORYSJ HGO Os06g0103300 LOC_Os06g01360 OsJ_19811 OSJNBa0075G19.26,Os06g0103300 OSNPB_060103300 ENOG411DRIP SIGF Q9LD95 SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic (Sigma factor F) (Sigma-F) (Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8) (RNA polymerase sigma factor sig6) (Atsig6) (Sigma factor 6) DISRUPTION PHENOTYPE: Chlorophyll-defective seedlings with reduced levels of chloroplast-encoded transcripts (e.g. atpB, atpE and rbcL). Delayed light-dependent chloroplast development. Constitutive acclimation to light stress. Suppressor of FLU disruption phenotype; seedlings missing both FLU and SIGF do not bleach when grown under non-permissive dark/light conditions. {ECO:0000269|PubMed:15807777, ECO:0000269|PubMed:16905663, ECO:0000269|PubMed:17118361, ECO:0000269|PubMed:19273469}. Pale green cotyledons with drastically reduced chlorophyll content in 3- to 4-day-old seedlings. The chlorophyll deficiency was limited to the young cotyledons and was restored to the wild-type level in 8-day-old seedlings. Pale green cotyledons-T. Shiina-2005 FUNCTION: Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. Regulates transcription in chloroplast in a DG1-dependent manner. Involved in light-dependent chloroplast development. Required during early plant development and primary leaf formation. {ECO:0000269|PubMed:15807777, ECO:0000269|PubMed:16905663, ECO:0000269|PubMed:17118361, ECO:0000269|PubMed:19273469, ECO:0000269|PubMed:20626654}. 61797 RNA polymerase sigma factor sigF, chloroplastic (Sigma factor F) (Sigma-F) (Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8) (RNA polymerase sigma factor sig6) (Atsig6) (Sigma factor 6) chloroplast [GO:0009507]; plastid [GO:0009536]; DNA binding [GO:0003677]; plastid sigma factor activity [GO:0001053]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to blue light [GO:0071483]; cellular response to light stimulus [GO:0071482]; DNA-templated transcription, initiation [GO:0006352]; positive regulation of transcription, DNA-templated [GO:0045893]; seedling development [GO:0090351] TISSUE SPECIFICITY: Expressed in seedling, accumulating progressively. Present in leaves but not in roots. {ECO:0000269|PubMed:15807777}. locus:2057996; AT2G36990 RNA polymerase sigma factor RNA polymerase sigma factor Q84LK8 Q84LK8_ORYSJ SIG6 Os08g0242800 OSJNBa0087F21.45 OSJNBb0070J06.3 OSNPB_080242800 FUNCTION: Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. {ECO:0000256|PIRNR:PIRNR000767}. ENOG411DRIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Stress responsive protein Os01g0104400 protein (cDNA clone:001-041-A11, full insert sequence) (cDNA clone:006-305-F10, full insert sequence) (cDNA clone:006-309-C04, full insert sequence) (cDNA clone:J023095C18, full insert sequence) Q9FTY4 Q9FTY4_ORYSJ Os01g0104400 OSNPB_010104400 P0436E04.19 ENOG411DRIR PER54,PER53 Q9FG34,Q42578 PER54_ARATH,PER53_ARATH Peroxidase 54 (Atperox P54) (EC 1.11.1.7) (ATP29a),Peroxidase 53 (Atperox P53) (EC 1.11.1.7) (ATPA2) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.,FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: Closely linked to lignin formation by showing monolignol substrate specificity. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G06730-MONOMER;,ARA:AT5G06720-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37290,34989 Peroxidase 54 (Atperox P54) (EC 1.11.1.7) (ATP29a),Peroxidase 53 (Atperox P53) (EC 1.11.1.7) (ATPA2) extracellular region [GO:0005576]; vacuolar membrane [GO:0005774]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; defense response to nematode [GO:0002215]; flower development [GO:0009908]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Mainly expressed in roots. locus:2170214;,locus:2170204; AT5G06730,AT5G06720 peroxidase Peroxidase (EC 1.11.1.7) Q5U1Q4 Q5U1Q4_ORYSJ prx39 LOC_Os03g13200 Os03g0234900 OsJ_10055 OSNPB_030234900 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DRIU PPOX2,HEMG2 Q8S9J1,A0A1P8BE27,A0A1P8BE58 PPOCM_ARATH,A0A1P8BE27_ARATH,A0A1P8BE58_ARATH Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial (PPO2) (EC 1.3.3.4) (Protein MATERNAL EFFECT EMBRYO ARREST 61),Protoporphyrinogen oxidase (EC 1.3.3.4) DISRUPTION PHENOTYPE: Embryo development arrested at one-cell zygotic stage. {ECO:0000269|PubMed:15634699}. FUNCTION: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. {ECO:0000250}.,FUNCTION: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. {ECO:0000256|RuleBase:RU364052}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrin-IX from protoporphyrinogen-IX: step 1/1.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis.,PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrin-IX from protoporphyrinogen-IX: step 1/1. {ECO:0000256|RuleBase:RU364052}. ARA:AT5G14220-MONOMER; R-ATH-189451; 1.3.3.4 55630,49866,61312 Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial (PPO2) (EC 1.3.3.4) (Protein MATERNAL EFFECT EMBRYO ARREST 61),Protoporphyrinogen oxidase (EC 1.3.3.4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; plastid [GO:0009536]; oxygen-dependent protoporphyrinogen oxidase activity [GO:0004729]; chlorophyll biosynthetic process [GO:0015995]; embryo development ending in seed dormancy [GO:0009793]; protoporphyrinogen IX biosynthetic process [GO:0006782],oxygen-dependent protoporphyrinogen oxidase activity [GO:0004729]; protoporphyrinogen IX biosynthetic process [GO:0006782] locus:2145603; AT5G14220 Protoporphyrinogen oxidase Os04g0490000 protein,Protoporphyrinogen oxidase (EC 1.3.3.4) (Fragment) Q0JC62,A0A0N7KJA0 Q0JC62_ORYSJ,A0A0N7KJA0_ORYSJ Os04g0490000 Os04g0490000 OSNPB_040490000,Os04g0490100 OSNPB_040490100 FUNCTION: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. {ECO:0000256|RuleBase:RU364052}. ENOG411DRIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os02g0119900 protein A0A0P0VE05 A0A0P0VE05_ORYSJ Os02g0119900 OSNPB_020119900 ENOG411DRIW Q9LIM2,F4IXH3 Q9LIM2_ARATH,F4IXH3_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein 215875,214633 P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787],nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; DNA demethylation [GO:0080111]; negative regulation of chromatin silencing [GO:0031936]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944] locus:2083681; AT3G15120 ATPase family associated with various cellular activities (AAA) Os01g0668200 protein A0A0P0V6A9 A0A0P0V6A9_ORYSJ Os01g0668200 OSNPB_010668200 ENOG411DRIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0703300 protein) (cDNA, clone: J033144O18, full insert sequence),Os03g0703300 protein (Fragment) Q75I97,A0A0P0W2K3 Q75I97_ORYSJ,A0A0P0W2K3_ORYSJ OSJNBa0004L11.13 LOC_Os03g49630 Os03g0703300 OSNPB_030703300,Os03g0703300 OSNPB_030703300 ENOG411DRIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DRIX ASY1,ASY2 F4HRV8,F4JTJ9,A0A1P8B8J9 ASY1_ARATH,ASY2_ARATH,A0A1P8B8J9_ARATH Meiosis-specific protein ASY1 (Protein ASYNAPTIC 1) (AtASY1),Meiosis-specific protein ASY2 (Protein ASYNAPTIC 2),DNA-binding HORMA family protein DISRUPTION PHENOTYPE: Failure of the pairing of homologous chromosomes during meiosis (asynapsis or non-homologous synapsis) in both male and female gametophytes. {ECO:0000269|PubMed:10855496}. The chromosome fragmentation phenotype of the asy1/ Atrad51 double mutant is indistinguishable from that of the Atrad51 mutant.,Defective in meiotic double strand break formation. Fewer chiasmata formed per cell compared to the wild type cells.,Despite no apparent defect in DNA double-strand breaks formation in asy1 DNA cross-over formation is severely compromised.,Mutant lines showed identical asynaptic and chiasma frequency phenotypes. Severely reduced fertility due to defects in meiosis-F. Franklin-2000 FUNCTION: Required for normal meiosis in male and female gametophytes. Plays a crucial role in coordinating the activity of DMC1, a key member of the homologous recombination machinery (PubMed:18504359). Acts at the interface between the developing chromosome axes and the recombination machinery to ensure DMC1-mediated interhomolog recombination (PubMed:17785529). {ECO:0000269|PubMed:17785529, ECO:0000269|PubMed:18504359}.,FUNCTION: Required for normal meiosis. {ECO:0000250|UniProtKB:F4HRV8}. 67211,158526,156918 Meiosis-specific protein ASY1 (Protein ASYNAPTIC 1) (AtASY1),Meiosis-specific protein ASY2 (Protein ASYNAPTIC 2),DNA-binding HORMA family protein chromatin [GO:0000785]; chromosome [GO:0005694]; condensed nuclear chromosome [GO:0000794]; nucleoplasm [GO:0005654]; chiasma assembly [GO:0051026]; synapsis [GO:0007129],chromosome [GO:0005694]; nucleus [GO:0005634]; synaptonemal complex assembly [GO:0007130],DNA binding [GO:0003677] locus:2019569;,locus:2116510; AT1G67370,AT4G32200 HORMA domain Meiosis-specific protein PAIR2 (OsASY1) (Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2),HORMA domain containing protein, expressed (Os12g0606600 protein),Os03g0202800 protein Q76CY8,Q2QMF2,A0A0P0VUC9 PAIR2_ORYSJ,Q2QMF2_ORYSJ,A0A0P0VUC9_ORYSJ PAIR2 ASY1 Os09g0506800 LOC_Os09g32930 OSNPB_090506800,LOC_Os12g41350 Os12g0606600 OSNPB_120606600,Os03g0202800 OSNPB_030202800 DISRUPTION PHENOTYPE: Failure of the pairing of homologous chromosomes during meiosis (asynapsis or non-homologous synapsis) in both male and female gametophytes. {ECO:0000269|PubMed:14758540}. FUNCTION: Essential factor for meiotic homologous chromosome pairing (synapsis) (PubMed:14758540). Plays an essential role in promoting homologous chromosome synapsis. Does not seem to play a role in chromosomal axial element formation, sister chromatid cohesion at centromeres or kinetochore assembly in meiosis I (PubMed:16410547). {ECO:0000269|PubMed:14758540, ECO:0000269|PubMed:16410547}. ENOG411DRIZ CLPB3 Q9LF37 CLPB3_ARATH Chaperone protein ClpB3, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 3) (Casein lytic proteinase B3) (Protein ALBINO OR PALE GREEN 6) DISRUPTION PHENOTYPE: Seedling lethal when grown on soil. On agar plates supplied with sucrose, seedlings grow slowly with a chlorotic phenotype. They display irregular and small chloroplasts without starch grains in the stroma and with disorganized grana stacks and undeveloped thylakoid membranes. {ECO:0000269|PubMed:16995899, ECO:0000269|PubMed:17144892}. Leaf chlorosis defect in chloroplast development. Seedling lethal without exogenous sucrose; With exogenous sucrose: Pale green-E. Vierling-2006 FUNCTION: Molecular chaperone essential for chloroplast development and seedling viability. Mediates internal thylakoid membrane formation and confers thermotolerance to chloroplasts during heat stress. {ECO:0000269|PubMed:16995899, ECO:0000269|PubMed:17144892}. MISCELLANEOUS: Plants overexpressing CLPB3 show inhibition of chloroplast development and a mild pale-green phenotype. 108943 Chaperone protein ClpB3, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 3) (Casein lytic proteinase B3) (Protein ALBINO OR PALE GREEN 6) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid stroma [GO:0009532]; ATP binding [GO:0005524]; chloroplast organization [GO:0009658]; protein processing [GO:0016485]; response to heat [GO:0009408] locus:2180922; AT5G15450 chaperone protein Chaperone protein ClpB2, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 2) (Casein lytic proteinase B2),Os03g0426900 protein (Fragment) Q75GT3,A0A0P0VYY3 CLPB2_ORYSJ,A0A0P0VYY3_ORYSJ CLPB2 CLPB-C Os03g0426900 LOC_Os03g31300 OSJNBa0020H02.1 OSJNBa0083F15.25,Os03g0426900 OSNPB_030426900 FUNCTION: Molecular chaperone that may play a role in chloroplast development. ENOG411DUBR WTF9 Q9ZUZ6 Q9ZUZ6_ARATH Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein At2g39120) 45208 Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein At2g39120) mitochondrion [GO:0005739]; hydrolase activity [GO:0016787]; RNA binding [GO:0003723]; cytochrome complex assembly [GO:0017004]; Group II intron splicing [GO:0000373] locus:2064940; AT2G39120 Plant organelle RNA recognition domain Expressed protein (Os03g0786600 protein) (cDNA clone:002-148-D10, full insert sequence) Q6F3B8 Q6F3B8_ORYSJ Os03g0786600 LOC_Os03g57270 Os03g0786600 OsJ_12864 OSJNBb0024J04.2 OSNPB_030786600 ENOG411DUBW MWD9.25 O64572,Q9SZQ2,F4K9W2 O64572_ARATH,Q9SZQ2_ARATH,F4K9W2_ARATH Expressed protein (Serine/arginine repetitive matrix protein),At4g29790/F27B13_30 (Serine/arginine repetitive matrix protein) (Uncharacterized protein AT4g29790) (Uncharacterized protein F27B13.30),Spectrin beta chain, brain 133362,133240,126085 Expressed protein (Serine/arginine repetitive matrix protein),At4g29790/F27B13_30 (Serine/arginine repetitive matrix protein) (Uncharacterized protein AT4g29790) (Uncharacterized protein F27B13.30),Spectrin beta chain, brain locus:2047695;,locus:2123879;,locus:2176347; AT2G19390,AT4G29790,AT5G22450 expressed protein Os05g0107300 protein,Os01g0967100 protein,Os05g0350700 protein (cDNA clone:J023092E14, full insert sequence),Os05g0350700 protein (Fragment) Q0DLD5,Q5JJU6,Q5W6G8,A0A0P0WL82 Q0DLD5_ORYSJ,Q5JJU6_ORYSJ,Q5W6G8_ORYSJ,A0A0P0WL82_ORYSJ Os05g0107300 Os05g0107300 OSNPB_050107300,Os01g0967100 OSNPB_010967100 P0458E05.36,Os05g0350700 Os05g0350700 OsJ_18177 OSJNBa0077J17.11 OSNPB_050350700,Os05g0350700 OSNPB_050350700 ENOG411DUBZ F4ICJ5 F4ICJ5_ARATH Di-glucose binding protein with Leucine-rich repeat domain-containing protein 68972 Di-glucose binding protein with Leucine-rich repeat domain-containing protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; vacuole [GO:0005773] locus:2031175; AT1G25570 Leucine-rich repeat Os01g0140400 protein (cDNA clone:J033117F21, full insert sequence),Os01g0140400 protein (Senescence-induced receptor-like serine/threonine kinase-like) (cDNA clone:001-124-F06, full insert sequence) B7EU05,Q5ZDH7 B7EU05_ORYSJ,Q5ZDH7_ORYSJ Os01g0140400 OSNPB_010140400,P0480E02.18-1 Os01g0140400 OsJ_00310 OSNPB_010140400 ENOG411DUBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Os12g0224400 protein (Fragment) A0A0P0Y876 A0A0P0Y876_ORYSJ Os12g0224400 OSNPB_120224400 ENOG411EDGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411DUBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0302900 protein) (cDNA clone:J023014L15, full insert sequence) Q10MM5 Q10MM5_ORYSJ SSD1 LOC_Os03g19080 Os03g0302900 OsJ_10536 OSNPB_030302900 ENOG411EK60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os05g0501600 protein Q60EJ1 Q60EJ1_ORYSJ Os05g0501600 OsJ_19100 OSJNBa0017K09.7 OSNPB_050501600 ENOG411EK67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain of PTEN tumour-suppressor protein Formin-like protein 5 (OsFH5),Formin-like protein Q84ZL0,A0A0P0X8E4 FH5_ORYSJ,A0A0P0X8E4_ORYSJ FH5 Os07g0596300 LOC_Os07g40510/LOC_Os07g40520 P0453E05.107,Os07g0596300 OSNPB_070596300 ENOG411EK64 FH5 Q94B77 FH5_ARATH Formin-like protein 5 (AtFH5) (AtFORMIN-5) (Formin homology 2 domain-containing protein 5) Enhancer trap of FH5 formin homology protein. Shows protein localization to cell plate endosperm and chalazal cyst.No morphological phenotype described.,Endosperm development is defective cellularization of the endosperm is delayed. Delayed endosperm cellularization; No other phenotypes detected-F. Berger-2005 FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. Interacts with the barbed end of actin filaments and nucleates actin-filament polymerization in vitro. Seems to play a role in cytokinesis. {ECO:0000269|PubMed:15765105}. 98358 Formin-like protein 5 (AtFH5) (AtFORMIN-5) (Formin homology 2 domain-containing protein 5) cell wall [GO:0005618]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; phragmoplast [GO:0009524]; actin binding [GO:0003779]; actin filament polymerization [GO:0030041]; actin nucleation [GO:0045010]; endosperm development [GO:0009960]; seed morphogenesis [GO:0048317] TISSUE SPECIFICITY: Expressed in the endosperm. Localizes to the cell plate, a plant-specific membranous component that is assembled at the plane of cell division. {ECO:0000269|PubMed:15765105}. locus:2172129; AT5G54650 FH2 NA NA NA NA NA NA NA ENOG411EK65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain of PTEN tumour-suppressor protein Os08g0280200 protein C7J5K4 C7J5K4_ORYSJ Os08g0280200 Os08g0280200 OSNPB_080280200 ENOG411EK68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GYF domain NA NA NA NA NA NA NA ENOG411EFYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EK6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chromatin assembly Chromatin assembly factor 1 subunit FSM (CAF-1 subunit FSM) (CAF-1 p150 homolog) (Protein FASCIATA 1 homolog) (Protein FLATTENED SHOOT MERISTEM) B2ZX90 FAS1_ORYSJ FSM Os01g0896300 LOC_Os01g67100 P0696G06.24 P0696G06.25 DISRUPTION PHENOTYPE: Dwarf and weak seedling that dies during vegetative phase. {ECO:0000269|PubMed:18538315}. FUNCTION: Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. Required for several aspects of development, including apical meristem maintenance by regulating the durations of the S- and G2-phases of the cell cycle through its chromatin assembly activity. {ECO:0000269|PubMed:18538315}. ENOG411EK6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor family ligand binding region NA NA NA NA NA NA NA ENOG411EK6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DOMON domain Os06g0649700 protein A0A0P0WZH6 A0A0P0WZH6_ORYSJ Os06g0649700 OSNPB_060649700 ENOG411DXPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411DXPT PYR1,PYL1 O49686,Q8VZS8 PYR1_ARATH,PYL1_ARATH Abscisic acid receptor PYR1 (ABI1-binding protein 6) (Protein PYRABACTIN RESISTANCE 1) (Regulatory components of ABA receptor 11),Abscisic acid receptor PYL1 (ABI1-binding protein 6) (PYR1-like protein 1) (Regulatory components of ABA receptor 9) Insensitive to pyrabactin (synthetic ABA analog)-S. Cutler-2009 FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA (PubMed:19407142, PubMed:19624469, PubMed:19769575, PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). {ECO:0000269|PubMed:19407142, ECO:0000269|PubMed:19624469, ECO:0000269|PubMed:19769575, ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015}.,FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA (PubMed:19407143, PubMed:19855379, PubMed:19893533, PubMed:19898420, PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). {ECO:0000269|PubMed:19407143, ECO:0000269|PubMed:19855379, ECO:0000269|PubMed:19893533, ECO:0000269|PubMed:19898420, ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015}. MISCELLANEOUS: The synthetic growth inhibitor pyrabactin inhibits ABA-binding and subsequent PP2Cs inhibitor properties. 21575,25361 Abscisic acid receptor PYR1 (ABI1-binding protein 6) (Protein PYRABACTIN RESISTANCE 1) (Regulatory components of ABA receptor 11),Abscisic acid receptor PYL1 (ABI1-binding protein 6) (PYR1-like protein 1) (Regulatory components of ABA receptor 9) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; identical protein binding [GO:0042802]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of protein serine/threonine phosphatase activity [GO:0080163],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of protein serine/threonine phosphatase activity [GO:0080163] locus:2141040;,locus:2178585; AT4G17870,AT5G46790 abscisic acid receptor Abscisic acid receptor PYL10 (PYR1-like protein 1) (OsPYL1) (PYR1-like protein 10) (OsPYL10) (Regulatory components of ABA receptor 10) Q7XBY6 PYL10_ORYSJ PYL10 PYL1 RCAR10 Os10g0573400 LOC_Os10g42280 OsJ_32555 OSJNBa0003O19.2 FUNCTION: Inhibits the protein phosphatases PP2C06 and PP2C09 when activated by abscisic acid (ABA) (PubMed:24743650). Together with PP2C53, SAPK8 and SAPK10, may form an ABA signaling module involved in stress response (PubMed:26491145). {ECO:0000269|PubMed:24743650, ECO:0000269|PubMed:26491145}. ENOG411DXPX Q9C8G3 Q9C8G3_ARATH Remorin family protein (Uncharacterized protein At1g30320) (Uncharacterized protein At1g30320/T4K22_7) (Uncharacterized protein T4K22.7) 57398 Remorin family protein (Uncharacterized protein At1g30320) (Uncharacterized protein At1g30320/T4K22_7) (Uncharacterized protein T4K22.7) plasma membrane [GO:0005886] locus:2204197; AT1G30320 Remorin family Os04g0620200 protein A0A0P0WF23 A0A0P0WF23_ORYSJ Os04g0620200 OSNPB_040620200 ENOG411DXPC MMM17.15 Q6NQK8,Q94F12,A0A1I9LL78,A0A1I9LL75,A8MS04,F4JEI2,A0A1I9LL77,A0A1I9LL76 Q6NQK8_ARATH,Q94F12_ARATH,A0A1I9LL78_ARATH,A0A1I9LL75_ARATH,A8MS04_ARATH,F4JEI2_ARATH,A0A1I9LL77_ARATH,A0A1I9LL76_ARATH At1g55140 (Ribonuclease III family protein) (Uncharacterized protein At1g55140),Ribonuclease III family protein (Uncharacterized protein At3g13730; MMM17.16) (Uncharacterized protein MMM17.15),Ribonuclease III family protein 26302,27682,21993,30176,18899,19701,17882,19648 At1g55140 (Ribonuclease III family protein) (Uncharacterized protein At1g55140),Ribonuclease III family protein (Uncharacterized protein At3g13730; MMM17.16) (Uncharacterized protein MMM17.15),Ribonuclease III family protein chloroplast [GO:0009507]; ribonuclease III activity [GO:0004525]; maturation of 4.5S rRNA [GO:0000476]; ncRNA processing [GO:0034470]; rRNA 5'-end processing [GO:0000967],ribonuclease III activity [GO:0004525]; RNA processing [GO:0006396] locus:2205687;,locus:2091586; AT1G55140,AT3G13740 Inherit from COG: Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc) Os05g0318300 protein (cDNA clone:001-202-H01, full insert sequence),Os11g0237700 protein Q5W6V8,A0A0N7KSP1 Q5W6V8_ORYSJ,A0A0N7KSP1_ORYSJ Os05g0318300 OSJNBb0059K16.5 OSNPB_050318300,Os11g0237700 OSNPB_110237700 ENOG411DXP2 ftsJ Q9SXH3 Q9SXH3_ARATH FtsJ (FtsJ-like methyltransferase family protein) 24333 FtsJ (FtsJ-like methyltransferase family protein) rRNA (uridine-2'-O-)-methyltransferase activity [GO:0008650] locus:2159063; AT5G13830 Ribosomal RNA large subunit methyltransferase FtsJ-like methyltransferase family protein, putative, expressed (Os03g0822300 protein) Q10BD5 Q10BD5_ORYSJ Os03g0822300 LOC_Os03g60750 Os03g0822300 OsJ_13158 OSNPB_030822300 ENOG411DXP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B7 (Beta-expansin-7) (OsEXPB7) (OsaEXPb1.12),Os03g0102700 protein (Fragment) Q9LD07,A0A0P0VRV2 EXPB7_ORYSJ,A0A0P0VRV2_ORYSJ EXPB7 Os03g0102700 LOC_Os03g01270 OsJ_09068,Os03g0102700 OSNPB_030102700 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DXP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein Os06g0623300 protein (Putative cinnamoyl-CoA reductase) (cDNA clone:J033093J18, full insert sequence),Os08g0183900 protein (Fragment) Q69U05,A0A0N7KPD6 Q69U05_ORYSJ,A0A0N7KPD6_ORYSJ Os06g0623300 OsJ_22017 OSJNBa0029G06.4 OSNPB_060623300,Os08g0183900 OSNPB_080183900 ENOG411EIZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain NA NA NA NA NA NA NA ENOG411EIZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0464050 protein,Os07g0464099 protein A0A0P0X5E7,A0A0P0X5T6 A0A0P0X5E7_ORYSJ,A0A0P0X5T6_ORYSJ Os07g0464050 OSNPB_070464050,Os07g0464099 OSNPB_070464099 ENOG411EIZV Q8GYG1,O81045,Q9SLM5 P24D7_ARATH,P24D8_ARATH,Q9SLM5_ARATH Transmembrane emp24 domain-containing protein p24delta7 (p24 family protein delta2a) (p24delta2a) (p24 family protein delta7) (p24delta7),Transmembrane emp24 domain-containing protein p24delta8 (p24 family protein delta2b) (p24delta2b) (p24 family protein delta8) (p24delta8),Emp24/gp25L/p24 family/GOLD family protein (Uncharacterized protein At2g03040) FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). {ECO:0000250}.,FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. {ECO:0000250, ECO:0000269|PubMed:15125774}. R-ATH-6807878;R-ATH-6811434; 24156,24565,19140 Transmembrane emp24 domain-containing protein p24delta7 (p24 family protein delta2a) (p24delta2a) (p24 family protein delta7) (p24delta7),Transmembrane emp24 domain-containing protein p24delta8 (p24 family protein delta2b) (p24delta2b) (p24 family protein delta8) (p24delta8),Emp24/gp25L/p24 family/GOLD family protein (Uncharacterized protein At2g03040) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2014864;,locus:2056976;,locus:2056730; AT1G14010,AT2G03290,AT2G03040 emp24/gp25L/p24 family/GOLD NA NA NA NA NA NA NA ENOG411EIZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Acyl transferase 15 (OsAT15) (EC 2.3.1.-),Os10g0108800 protein (Putative 10-deacetylbaccatin III-10-O-acetyl transferase) (Transferase family protein, expressed),Os10g0107400 protein,Os10g0122500 protein (Putative O-deacetylbaccatin III-10-0-acetyltransferase) (Transferase family protein, expressed),Os10g0122300 protein (Putative O-deacetylbaccatin III-10-0-acetyltransferase) (Transferase family protein),Os10g0109200 protein Q7XHC4,Q7XHC3,B9G5A1,Q8S7R3,Q8S7R5,A0A0N7KRC3 AT15_ORYSJ,Q7XHC3_ORYSJ,B9G5A1_ORYSJ,Q8S7R3_ORYSJ,Q8S7R5_ORYSJ,A0A0N7KRC3_ORYSJ AT15 Os10g0108700 LOC_Os10g01920 OsJ_30490 OSJNBa0015O22.8,OSJNBa0015O22.9 Os10g0108800 LOC_Os10g01930 OsJ_30491 OSNPB_100108800,Os10g0107400 OsJ_30482 OSNPB_100107400,OSJNBa0049K09.22 Os10g0122500 LOC_Os10g03390 OSJNAa0049K09.5 OSNPB_100122500,OSJNBa0049K09.20 Os10g0122300 LOC_Os10g03360 OsJ_30565 OSJNAa0049K09.3 OSNPB_100122300,Os10g0109200 OSNPB_100109200 FUNCTION: Involved in the incorporation of ferulate into the cell wall. {ECO:0000269|PubMed:23391577}. MISCELLANEOUS: Plants over-expressing AT15 have significant reduction of ferulate in leaf cell wall. {ECO:0000269|PubMed:23391577}. ENOG411EIZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Diacylglycerol kinase catalytic domain NA NA NA NA NA NA NA ENOG411EIZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EIZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411EIZZ NUCL1 Q9FVQ1,Q9CAJ2 NUCL1_ARATH,Q9CAJ2_ARATH Nucleolin 1 (Protein NUCLEOLIN LIKE 1) (AtNUC-L1) (Protein PARALLEL 1) (AtPARL1),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g72800) (Uncharacterized protein F28P22.1) DISRUPTION PHENOTYPE: Reduced growth, bushy plants with stunted leaves, abnormal vascular patterns and many stems. Altered nucleolus ultrastructure. {ECO:0000269|PubMed:17108323, ECO:0000269|PubMed:17286797, ECO:0000269|PubMed:17369435, ECO:0000269|PubMed:21124873}. parl1-1 mutants initially identified based on their aberrant parallel venation pattern in juvenile leaves exhibit several other developmental defects. They have abnormal venation patterns in their cotyledons adult leaves petals and sepals. In addition they are shorter have abnormal leaf shapes and have reduced apical dominance rosette size fertility and root length compared to wild type plants. The normal adaxial/abaxial arrangement of xylem and phloem is maintained in parl1-1 mutant leaves but they have a reduced palisade mesophyll layer in the leaf. There are aberrant expression patterns for the DR5:GUS reporter and the Athb8:GUS reporter in the parl1-1 mutants.,par1-2 mutants have defects in leaf venation patterns as well as several other developmental defects including reduced stature reduced apical dominance and reduced fertility relative to wild type plants. They accumulate pre-rRNA transcripts that have not been spliced at the A0 site. Narrow, slightly smaller cotyledons and leaves; Short roots; Semi-dwarf; Increased branching; Reduced fertility; Abnormal cotyledon, leaf, sepal, and petal venation-T. Nelson-2007 FUNCTION: Involved in pre-rRNA processing and ribosome assembly (PubMed:17108323, PubMed:17286797, PubMed:17369435, PubMed:21124873). Is associated with intranucleolar chromatin and pre-ribosomal particles and plays a role in controlling activation and repression of a specific subset of rRNA genes located in distinctive nucleolar organizer regions. Binds specifically rDNA chromatin and may be required to maintain rDNA chromatin structure, but is probably not required for the overall histone methylation status of 45S rRNA genes (PubMed:17108323, PubMed:17286797, PubMed:21124873). Involved in leaf polarity establishment by functioning cooperatively with AS1 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures (PubMed:27334696). {ECO:0000269|PubMed:17108323, ECO:0000269|PubMed:17286797, ECO:0000269|PubMed:17369435, ECO:0000269|PubMed:21124873, ECO:0000269|PubMed:27334696}. MISCELLANEOUS: Disruption of NUCL1 induces NUCL2 expression. {ECO:0000305|PubMed:17108323}. R-ATH-6791226; 58773,35335 Nucleolin 1 (Protein NUCLEOLIN LIKE 1) (AtNUC-L1) (Protein PARALLEL 1) (AtPARL1),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g72800) (Uncharacterized protein F28P22.1) mitochondrion [GO:0005739]; nucleolus [GO:0005730]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; cotyledon vascular tissue pattern formation [GO:0010588]; endonucleolytic cleavage involved in rRNA processing [GO:0000478]; leaf development [GO:0048366]; leaf vascular tissue pattern formation [GO:0010305]; petal vascular tissue pattern formation [GO:0080056]; ribosome biogenesis [GO:0042254]; root development [GO:0048364]; rRNA processing [GO:0006364]; sepal vascular tissue pattern formation [GO:0080057]; shoot system development [GO:0048367],nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed in roots, leaves, shoots and flowers. {ECO:0000269|PubMed:17108323, ECO:0000269|PubMed:17286797, ECO:0000269|PubMed:17369435}. locus:2028451;,locus:2030160; AT1G48920,AT1G72800 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EIZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EIZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_PMZ NA NA NA NA NA NA NA ENOG411EIZG Q9SJ78,Q9ZPR5,Q9FF30,Q9ZPR8,Q9SJ76,Q9SJ75 FB98_ARATH,FB97_ARATH,FB267_ARATH,Q9ZPR8_ARATH,Q9SJ76_ARATH,Q9SJ75_ARATH Putative F-box protein At2g04810,Putative F-box protein At2g03610,Putative F-box protein At5g38270,F-box family protein-like protein (Uncharacterized protein At2g03580),At2g04830 (F-box only protein (DUF295)) (Uncharacterized protein At2g04830) (Uncharacterized protein At2g04830/F28I8.13),F-box only protein (DUF295) (Uncharacterized protein At2g04840) 46612,25273,47488,16966,11738,45571 Putative F-box protein At2g04810,Putative F-box protein At2g03610,Putative F-box protein At5g38270,F-box family protein-like protein (Uncharacterized protein At2g03580),At2g04830 (F-box only protein (DUF295)) (Uncharacterized protein At2g04830) (Uncharacterized protein At2g04830/F28I8.13),F-box only protein (DUF295) (Uncharacterized protein At2g04840) locus:2049163;,locus:2044239;,locus:2176727;,locus:2044304;,locus:2049138;,locus:2049132; AT2G04810,AT2G03610,AT5G38270,AT2G03580,AT2G04830,AT2G04840 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EIZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metallo-beta-lactamase superfamily NA NA NA NA NA NA NA ENOG411EIZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411EIZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0702500 protein (Fragment) A0A0P0VNP2,A0A0P0VNG7,A0A0P0VND9 A0A0P0VNP2_ORYSJ,A0A0P0VNG7_ORYSJ,A0A0P0VND9_ORYSJ Os02g0702500 OSNPB_020702500 ENOG411EIZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411EIZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411EIZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBZ FHIT A0A1P8BCS8 A0A1P8BCS8_ARATH FRAGILE HISTIDINE TRIAD 14618 FRAGILE HISTIDINE TRIAD catalytic activity [GO:0003824] HIT domain NA NA NA NA NA NA NA ENOG411E7N6 EPFL6,CHAL Q1PEY6,A0A1P8B1K2,F4IMT0 EPFL6_ARATH,A0A1P8B1K2_ARATH,F4IMT0_ARATH EPIDERMAL PATTERNING FACTOR-like protein 6 (EPF-like protein 6) [Cleaved into: CHALLAH],Allergen-like protein DISRUPTION PHENOTYPE: No visible phenotype in wild-type background, but restores stomata to hypocotyls in a tmm background. Chal and cll2 double mutants are defective in growth, with a short stature, shortened pedicells and compact inflorescence. {ECO:0000269|PubMed:20056678, ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22474391}. Mutants produce stomata on the hypocotyl and also produce small groups of hypocotyl cells in an arrangement that resembles braided challah bread. FUNCTION: Acts primarily as positive regulator of inflorescence growth. Endodermal expression is sufficient for proper inflorescence architecture (PubMed:22474391). Redundantly involved with EPFL4 in procambial development regulation. Acts also as tissue-specific regulator of epidermal pattern. Controls stomatal patterning by repressing stomatal production. TMM (AC Q9SSD1) functions to dampen or block CHAL signaling. Not processed by SDD1 (AC O64495). Acts as growth-regulatory ligand for ERECTA family receptors. {ECO:0000269|PubMed:20056678, ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22474391, ECO:0000269|PubMed:23881395}. 17180,18390,25445 EPIDERMAL PATTERNING FACTOR-like protein 6 (EPF-like protein 6) [Cleaved into: CHALLAH],Allergen-like protein extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; stomatal complex development [GO:0010374],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; negative regulation of stomatal complex development [GO:2000122] TISSUE SPECIFICITY: Expressed in the internal layers of the root, hypocotyl and stems, and in the midrib of developing rosette leaves. Detected in a ring of cells surrounding the vascular elements. Expressed in developing stems soon after bolting, in inflorescence stems, near the root apex and in the chalazal region of ovules. Not found in cotyledons or in stomatal precursors or stomata. {ECO:0000269|PubMed:20056678, ECO:0000269|PubMed:21862708, ECO:0000269|PubMed:22027592}. locus:2065719; AT2G30370 epidermal patterning factor-like protein Os01g0824500 protein A0A0P0V9Y9 A0A0P0V9Y9_ORYSJ Os01g0824500 OSNPB_010824500 ENOG411E7N7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hypoxia induced protein conserved region NA NA NA NA NA NA NA ENOG411E7N4 psbN P62113 PSBN_ARATH Protein PsbN FUNCTION: May play a role in photosystem I and II biogenesis. {ECO:0000255|HAMAP-Rule:MF_00293}. 4722 Protein PsbN chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; photosynthesis [GO:0015979] locus:504954693; ATCG00700 photosystem II reaction center N protein Protein PsbN P68853 PSBN_ORYSJ psbN LOC_Osp1g00630 FUNCTION: May play a role in photosystem I and II biogenesis. {ECO:0000255|HAMAP-Rule:MF_00293}. ENOG411E7N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0500300 protein (cDNA clone:J023143M04, full insert sequence),Os02g0541900 protein (cDNA clone:002-121-D10, full insert sequence),Os04g0500400 protein Q0JC01,Q6ESZ4,C7J1S9 Q0JC01_ORYSJ,Q6ESZ4_ORYSJ,C7J1S9_ORYSJ Os04g0500300 Os04g0500300 OSNPB_040500300,Os02g0541900 OJ1298_H07.32 OsJ_07057 OSNPB_020541900 P0472F10.10,Os04g0500400 Os04g0500400 OSNPB_040500400 ENOG411E7N2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7N3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Zinc finger protein Os12g0617000 protein A0A0P0YD58 A0A0P0YD58_ORYSJ Os12g0617000 OSNPB_120617000 ENOG411E7N0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E7N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0526550 protein,Os01g0526900 protein A0A0P0V3S7,A0A0P0V3R7 A0A0P0V3S7_ORYSJ,A0A0P0V3R7_ORYSJ Os01g0526550 OSNPB_010526550,Os01g0526900 OSNPB_010526900 ENOG411E7N8 Q84JT5 Q84JT5_ARATH Copia-like polyprotein/retrotransposon (Uncharacterized protein At1g21280) 27765 Copia-like polyprotein/retrotransposon (Uncharacterized protein At1g21280) locus:2014907; AT1G21280 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E7N9 MSF3.7,MSF3.6 Q9ZV49,A8MQF6,F4IRF0 Q9ZV49_ARATH,A8MQF6_ARATH,F4IRF0_ARATH Expressed protein (Transmembrane protein),Transmembrane protein 36039,26841,32438 Expressed protein (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021]; membrane [GO:0016020],integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2054016;,locus:2054005; AT2G18690,AT2G18680 NA NA NA NA NA NA NA NA ENOG411E7NV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0939000 protein Q8RUN8 Q8RUN8_ORYSJ Os01g0939000 B1150F11.10 OsJ_04710 OSNPB_010939000 P0504E02.34 ENOG411E7NW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0137600 protein (cDNA clone:J013011J07, full insert sequence) Q75L32 Q75L32_ORYSJ Os05g0137600 Os05g0137600 OJ1127_B08.15 OSJNBa0069I13.1 OSNPB_050137600 ENOG411E7NT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0672500 protein (Zinc knuckle family protein, expressed) Q2QZT6 Q2QZT6_ORYSJ Os11g0672500 LOC_Os11g44890 OsJ_34711 OSNPB_110672500 ENOG411E7NR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0839800 protein) (cDNA clone:002-168-E09, full insert sequence) Q851P2 Q851P2_ORYSJ OSJNBa0042I09.2 LOC_Os03g62330 Os03g0839800 OsJ_13302 OSJNBa0075M12.2 OSNPB_030839800 ENOG411E7NS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os02g0833600 protein Q6ESB3 Q6ESB3_ORYSJ Os02g0833600 Os02g0833600 OJ1282_E10.14 OsJ_09015 OSNPB_020833600 ENOG411E7NP ATL28 Q6NKR1 ATL28_ARATH RING-H2 finger protein ATL28 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL28) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 28623 RING-H2 finger protein ATL28 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL28) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567] locus:2062502; AT2G35420 zinc finger Os10g0574400 protein (Fragment) A0A0P0XXU1 A0A0P0XXU1_ORYSJ Os10g0574400 OSNPB_100574400 ENOG411E7NQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os10g0148000 protein (Fragment) A0A0P0XRJ8 A0A0P0XRJ8_ORYSJ Os10g0148000 OSNPB_100148000 ENOG411E7NZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0457401 protein B9FKK6 B9FKK6_ORYSJ Os05g0457401 OsJ_18792 OSNPB_050457401 ENOG411E7NX T10K17.140 Q9M2Q5 Q9M2Q5_ARATH Rho GTPase-activating gacO-like protein (Uncharacterized protein At3g57930) (Uncharacterized protein T10K17.140) 15840 Rho GTPase-activating gacO-like protein (Uncharacterized protein At3g57930) (Uncharacterized protein T10K17.140) locus:2095813; AT3G57930 NA NA NA NA NA NA NA NA ENOG411E7NY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) OSJNBa0044M19.18 protein (OSJNBa0053B21.4 protein) (Os04g0387900 protein) (cDNA clone:001-112-D08, full insert sequence) Q7XLN8 Q7XLN8_ORYSJ Os04g0387900 Os04g0387900 OsJ_14572 OSJNBa0044M19.18 OSJNBa0053B21.4 OSNPB_040387900 ENOG411E7NF TOM6 Q9XIA7 TOM6_ARATH Mitochondrial import receptor subunit TOM6 homolog (Translocase of outer membrane 6 kDa subunit homolog) FUNCTION: A component of the complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. {ECO:0000305}. 6265 Mitochondrial import receptor subunit TOM6 homolog (Translocase of outer membrane 6 kDa subunit homolog) integral component of membrane [GO:0016021]; mitochondrial outer membrane translocase complex [GO:0005742]; mitochondrion [GO:0005739]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2010212; AT1G49410 Inherit from NOG: mitochondrial import receptor subunit TOM6 homolog NA NA NA NA NA NA NA ENOG411E7NG F4JDC7 F4JDC7_ARATH Nuclear polyadenylated RNA-binding protein 19380 Nuclear polyadenylated RNA-binding protein locus:2092840; AT3G13480 NA NA NA NA NA NA NA NA ENOG411E7ND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate transport (Pho88) NA NA NA NA NA NA NA ENOG411E7NB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) Os01g0101900 protein Q655M4 Q655M4_ORYSJ Os01g0101900 OsJ_00016 OSNPB_010101900 P0672D08.26 ENOG411E7NC Q8GWD5,Q56X75 CSPLC_ARATH,CSPLB_ARATH CASP-like protein 4D1 (AtCASPL4D1),CASP-like protein 4D2 (AtCASPL4D2) 19204,18800 CASP-like protein 4D1 (AtCASPL4D1),CASP-like protein 4D2 (AtCASPL4D2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] DEVELOPMENTAL STAGE: In the root epidermis, expressed transiently in the root maturation zone. {ECO:0000269|PubMed:24920445}. TISSUE SPECIFICITY: Expressed in the root epidermis. {ECO:0000269|PubMed:24920445}. locus:2039702;,locus:4010713692; AT2G39530,AT2G39518 CONTAINS InterPro DOMAIN s Uncharacterised protein family UPF0497 trans-membrane plant (InterPro IPR006702) Uncharacterised protein family UPF0497 trans-membrane plant subgroup (InterPro IPR006459) NA NA NA NA NA NA NA ENOG411E7NA COX17-1,COX17-2,COX17 Q9LJQ9,Q94FT1,A0A1I9LSX3,A0A1I9LSX2,A0A1I9LSX1 CX171_ARATH,CX172_ARATH,A0A1I9LSX3_ARATH,A0A1I9LSX2_ARATH,A0A1I9LSX1_ARATH Cytochrome c oxidase copper chaperone 1 (Cytochrome c oxidase 17 copper chaperone) (AtCOX17),Cytochrome c oxidase copper chaperone 2,Cytochrome c oxidase 17 FUNCTION: Copper chaperone for cytochrome c oxidase (COX). Binds 2 copper ions and delivers them to the Cu(A) site of COX (By similarity). Can complement the yeast mutant cox17. {ECO:0000250, ECO:0000269|PubMed:12177498}.,FUNCTION: Copper chaperone for cytochrome c oxidase (COX). Binds 2 copper ions and delivers them to the Cu(A) site of COX (By similarity). {ECO:0000250}. 8051,7938,9025,8182,11092 Cytochrome c oxidase copper chaperone 1 (Cytochrome c oxidase 17 copper chaperone) (AtCOX17),Cytochrome c oxidase copper chaperone 2,Cytochrome c oxidase 17 mitochondrial intermembrane space [GO:0005758]; copper chaperone activity [GO:0016531]; copper ion transport [GO:0006825]; response to bacterium [GO:0009617]; response to copper ion [GO:0046688],mitochondrial intermembrane space [GO:0005758]; copper chaperone activity [GO:0016531]; copper ion transport [GO:0006825],integral component of membrane [GO:0016021]; mitochondrial intermembrane space [GO:0005758]; copper chaperone activity [GO:0016531]; copper ion transport [GO:0006825] locus:505006350;,locus:2037072; AT3G15352,AT1G53030 cytochrome C oxidase Os02g0794600 protein (Putative copper chaperone COX17-1) Q6K670 Q6K670_ORYSJ Os02g0794600 OJ1695_H09.3 OsJ_08703 OSNPB_020794600 P0700F06.35 ENOG411E7NN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0971000 protein (cDNA clone:001-036-E01, full insert sequence) (cDNA clone:J013028J10, full insert sequence) Q94DI1 Q94DI1_ORYSJ Os01g0971000 Os01g0971000 OsJ_04918 OSNPB_010971000 P0518C01.6 ENOG411E7NJ Q9LSJ1 Q9LSJ1_ARATH At3g28420 (Putative membrane lipoprotein) 25411 At3g28420 (Putative membrane lipoprotein) integral component of membrane [GO:0016021] locus:2088907; AT3G28420 NA NA NA NA NA NA NA NA ENOG411E7NH COR47,ERD14,ERD10 P31168,P42763,P42759,F4HST2 COR47_ARATH,ERD14_ARATH,ERD10_ARATH,F4HST2_ARATH Dehydrin COR47 (Cold-induced COR47 protein),Dehydrin ERD14,Dehydrin ERD10 (Low-temperature-induced protein LTI45),Dehydrin family protein Low germination rate; Abnormal seed shape; Sensitive to low temperature and drought-K. Nam-2010 FUNCTION: Intrinsically disordered protein acting as a chaperone. Prevents heat-induced aggregation and/or inactivation of various substrates. Binds to acidic phospholipid vesicles without affecting membrane fluidity. {ECO:0000269|PubMed:18359842}. 29897,20786,29548,29443 Dehydrin COR47 (Cold-induced COR47 protein),Dehydrin ERD14,Dehydrin ERD10 (Low-temperature-induced protein LTI45),Dehydrin family protein cytosol [GO:0005829]; membrane [GO:0016020]; copper ion binding [GO:0005507]; nickel cation binding [GO:0016151]; cold acclimation [GO:0009631]; defense response to fungus [GO:0050832]; heat acclimation [GO:0010286]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414],chloroplast [GO:0009507]; cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; phosphatidylcholine binding [GO:0031210]; phosphatidylserine binding [GO:0001786]; cold acclimation [GO:0009631]; protein stabilization [GO:0050821]; regulation of membrane permeability [GO:0090559]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to desiccation [GO:0009269],cytoplasm [GO:0005737]; cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; membrane [GO:0016020]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; actin binding [GO:0003779]; copper ion binding [GO:0005507]; nickel cation binding [GO:0016151]; phosphatidylcholine binding [GO:0031210]; phosphatidylserine binding [GO:0001786]; cold acclimation [GO:0009631]; protein stabilization [GO:0050821]; regulation of membrane permeability [GO:0090559]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to water deprivation [GO:0009414],response to stress [GO:0006950]; response to water [GO:0009415] TISSUE SPECIFICITY: In stems, cauline leaves, roots and flowers. Low levels found in maturing seeds. Absent in dry seeds. locus:2034376;,locus:2199757;,locus:2034369; AT1G20440,AT1G76180,AT1G20450 early response to dehydration 14 NA NA NA NA NA NA NA ENOG411E7NI MNC6.19 Q9FJB9 Q9FJB9_ARATH ABC transporter A family protein (At5g53650) (Uncharacterized protein At5g53650/MNC6_19) 8029 ABC transporter A family protein (At5g53650) (Uncharacterized protein At5g53650/MNC6_19) integral component of membrane [GO:0016021] locus:2168671; AT5G53650 NA NA NA NA NA NA NA NA ENOG411DVFP ERD7,P85 O48832,F4JNX2,Q9SD22,A0A1P8B3F8,A0A1P8AYB1,A0A1P8B3G4,A0A1I9LMR0 ERD7_ARATH,SDEH4_ARATH,SDEH3_ARATH,A0A1P8B3F8_ARATH,A0A1P8AYB1_ARATH,A0A1P8B3G4_ARATH,A0A1I9LMR0_ARATH Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic,Senescence/dehydration-associated protein At4g35985, chloroplastic,Senescence/dehydration-associated protein At3g51250,Senescence/dehydration-associated protein-like protein 49000,48679,49904,35416,43055,41962,40986 Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic,Senescence/dehydration-associated protein At4g35985, chloroplastic,Senescence/dehydration-associated protein At3g51250,Senescence/dehydration-associated protein-like protein chloroplast [GO:0009507]; plasma membrane [GO:0005886]; circadian rhythm [GO:0007623]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],chloroplast [GO:0009507]; response to cold [GO:0009409]; response to oomycetes [GO:0002239]; response to salt stress [GO:0009651],plasmodesma [GO:0009506] TISSUE SPECIFICITY: Expressed in leaves (especially in midribs and trichomes), apical meristemic regions, stems, roots and flowers. {ECO:0000269|PubMed:24260266}. locus:2827800;,locus:505006562;,locus:2081013; AT2G17840,AT4G35985,AT3G51250 senescence-associated protein Os03g0241900 protein (Senescence-associated protein, expressed) (cDNA clone:J013072L11, full insert sequence) (cDNA clone:J013096B20, full insert sequence),Os06g0717100 protein (Putative ERD7 protein),Os03g0241900 protein (Fragment) Q10P99,Q5Z9N6,A0A0P0VVA4 Q10P99_ORYSJ,Q5Z9N6_ORYSJ,A0A0P0VVA4_ORYSJ LOC_Os03g13840 Os03g0241900 OsJ_10096 OSNPB_030241900,Os06g0717100 Os06g0717100 OSNPB_060717100 P0481E08.41 P0541C02.8,Os03g0241900 OSNPB_030241900 ENOG411DVFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin carboxyl-terminal hydrolase family 1 Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12) Q0J985 Q0J985_ORYSJ Os04g0667500 Os04g0667500 OSNPB_040667500 ENOG411EDH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411EDHK MEE6.17,MEE6.18 A4FVS2,Q9FLL8,Q8GXK6,A0A1P8BG44 A4FVS2_ARATH,Q9FLL8_ARATH,Q8GXK6_ARATH,A0A1P8BG44_ARATH At5g41100 (Hydroxyproline-rich glycoprotein family protein),Meiosis chromosome segregation family protein,Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At5g41100/MEE6_17) 64924,68744,64500,51286 At5g41100 (Hydroxyproline-rich glycoprotein family protein),Meiosis chromosome segregation family protein,Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At5g41100/MEE6_17) plasma membrane [GO:0005886] locus:2163061;,locus:2163076; AT5G41100,AT5G41110 Inherit from euNOG: Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411EJG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein NA NA NA NA NA NA NA ENOG411DSC6 O81469,Q9LP92,A0A1P8B7M4 O81469_ARATH,Q9LP92_ARATH,A0A1P8B7M4_ARATH At4g08510 (Mediator of RNA polymerase II transcription subunit-like protein) (T15F16.13 protein) (Uncharacterized protein At4g08510),C-jun-amino-terminal kinase-interacting protein (T32E20.28) (Uncharacterized protein At1g36990),Mediator of RNA polymerase II transcription subunit-like protein 59409,61776,59041 At4g08510 (Mediator of RNA polymerase II transcription subunit-like protein) (T15F16.13 protein) (Uncharacterized protein At4g08510),C-jun-amino-terminal kinase-interacting protein (T32E20.28) (Uncharacterized protein At1g36990),Mediator of RNA polymerase II transcription subunit-like protein chloroplast [GO:0009507],kinase activity [GO:0016301] locus:2133564;,locus:2203084; AT4G08510,AT1G36990 NA Os04g0448200 protein (cDNA clone:J013162C23, full insert sequence) Q0JCV2 Q0JCV2_ORYSJ Os04g0448200 Os04g0448200 OSNPB_040448200 ENOG411EECG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ATP-binding cassette sub-family C (CFTR MRP) member NA NA NA NA NA NA NA ENOG411EECF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EECE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EECC A0A1P8AV78,A0A1P8AV53,A0A1P8AV93,F4I7C8 A0A1P8AV78_ARATH,A0A1P8AV53_ARATH,A0A1P8AV93_ARATH,F4I7C8_ARATH Hydroxyproline-rich glycoprotein family protein 71479,82719,62028,82588 Hydroxyproline-rich glycoprotein family protein chloroplast outer membrane [GO:0009707]; chloroplast organization [GO:0009658] locus:2197419; AT1G11070 NA NA NA NA NA NA NA NA ENOG411EECB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XK-related protein NA NA NA NA NA NA NA ENOG411EECA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EECN Q6NQN8,O64871 Q6NQN8_ARATH,O64871_ARATH At2g17740 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g17740),At2g44370 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g44370) 27954,28022 At2g17740 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g17740),At2g44370 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g44370) cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791]; megagametogenesis [GO:0009561]; microgametogenesis [GO:0055046],cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2827948;,locus:2050589; AT2G17740,AT2G44370 C1 domain NA NA NA NA NA NA NA ENOG411EECM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EECK AVT1E Q8LPF4,F4KCA4 AVT1E_ARATH,F4KCA4_ARATH Amino acid transporter AVT1E (AtAvt1E),Transmembrane amino acid transporter family protein R-ATH-425393;R-ATH-888590; 57538,52113 Amino acid transporter AVT1E (AtAvt1E),Transmembrane amino acid transporter family protein integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021] locus:2185143; AT5G02170 amino acid transporter family protein NA NA NA NA NA NA NA ENOG411EECJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin_1 NA NA NA NA NA NA NA ENOG411EECI RLP2,RLP3 Q9SHI3,Q9SHI4,A0A1P8APD8 RLP2_ARATH,RLP3_ARATH,A0A1P8APD8_ARATH Receptor-like protein 2 (AtRLP2),Receptor like protein 3 (AtRLP3) (Protein RESISTANCE TO FUSARIUM OXYSPORUM 2),Receptor like protein 2 DISRUPTION PHENOTYPE: Normal resistance to F.oxysporum (f.) matthioli in cv. Columbia. The double mutant rfo1 rfo2 is strongly susceptible to F.oxysporum. {ECO:0000269|PubMed:23717215}. FUNCTION: Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. {ECO:0000269|PubMed:19897604}.,FUNCTION: Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance (By similarity). Contributes, with WAKL22/RFO1, to resistance to F.oxysporum (f.) matthioli in cv. Columbia relative to cv. Ty-0 (PubMed:15965251, PubMed:23717215). {ECO:0000250|UniProtKB:Q9SHI3, ECO:0000269|PubMed:15965251, ECO:0000269|PubMed:23717215}. 80576,83640,81193 Receptor-like protein 2 (AtRLP2),Receptor like protein 3 (AtRLP3) (Protein RESISTANCE TO FUSARIUM OXYSPORUM 2),Receptor like protein 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021]; defense response to fungus [GO:0050832]; innate immune response [GO:0045087]; response to fungus [GO:0009620],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed at very low levels in the shoot apex. {ECO:0000269|PubMed:19897604}. locus:2020402;,locus:2020382; AT1G17240,AT1G17250 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EECH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EECW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os05g0431700 protein A0A0P0WML3 A0A0P0WML3_ORYSJ Os05g0431700 OSNPB_050431700 ENOG411EECV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF3448 NA NA NA NA NA NA NA ENOG411EECU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411EECT CBP60G F4K2R6,A0A1P8BEE3 CB60G_ARATH,A0A1P8BEE3_ARATH Calmodulin-binding protein 60 G,Cam-binding protein 60-like G DISRUPTION PHENOTYPE: Reduced basal resistance to Pseudomonas syringae pv. maculicola ES4326 and P. syringae pv. tomato DC3000. Impaired systemic acquired resistance (SAR) induced by P. syringae toward Hyaloperonospora arabidopsidis Noco2. Plants lacking both SARD1 and CBP60G fail to accumulate salicylic acid (SA) and to express PR1 and SID2 upon both biotic and abiotic stresses. {ECO:0000269|PubMed:19214217, ECO:0000269|PubMed:20921422, ECO:0000269|PubMed:21615571, ECO:0000269|PubMed:22466450}. cbp60g-2 plants are more susceptible to infection by Pseudomonas syringae pv. maculicola ES4326. Salicylic acid levels are lower in cbp60g-2 than in wild-type following treatment with flg22 peptide or challenge with P. syringae pv. tomato DC3000 hrcC.,cbp60g-1 plants are more susceptible to infection by Pseudomonas syringae pv. maculicola ES4326. The expression profile of plants challenged with P. syringae pv tomato DC3000 hrcC is altered. Salicylic acid levels are lower in cbp60g-1 than in wild-type following treatment with flg22 peptide challenge with P. syringae pv tomato DC3000 hrcC or infection with P. syringae pv. maculicola ES4326 (only at an early time point). CBP60g binds calmodulin and calmodulin-binding is necessary for complementation of cbp60g-1 pathogen growth and salicylate defects. These phenotypes were interpreted as indicating a defect in activation of salicylate synthesis during a MAMP/PAMP (microbe/pathogen- associated molecular pattern) response. Susceptible to bacterial infection-J. Glazebrook-2009 FUNCTION: Transcription activator that binds DNA in a sequence-specific manner, 5'-GAAATTTTGG-3', to promote the expression of target genes (PubMed:20921422, PubMed:21615571, PubMed:23153277). Recruited to the promoter of ICS1 and other defense-related genes (e.g. PR1, PR2 and EDS5) in response to both biotic (e.g. Pseudomonas syringae pv. maculicola ES4326, P. syringae pv. tomato DC3000, and microbe-associated molecular patterns (MAMPs) such as flg22) and abiotic stresses (e.g. UV-B, drought and abscisic acid), thus triggering rapid defense responses by stimulating salicylic acid (SA) biosynthesis. Involved in basal and systemic acquired resistance to P. syringae and Hyaloperonospora arabidopsidis (PubMed:20921422, PubMed:21615571, PubMed:22466450, PubMed:19214217). Mediates resistance to drought and sensitivity to abscisic acid (ABA), especially for ABA-mediated signaling process that regulates early seedling growth (PubMed:22466450). {ECO:0000269|PubMed:19214217, ECO:0000269|PubMed:20921422, ECO:0000269|PubMed:21615571, ECO:0000269|PubMed:22466450, ECO:0000269|PubMed:23153277}. 63068,47397 Calmodulin-binding protein 60 G,Cam-binding protein 60-like G nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to hypoxia [GO:0071456]; cellular response to molecule of bacterial origin [GO:0071219]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to oomycetes [GO:0002229]; plant-type hypersensitive response [GO:0009626]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of response to water deprivation [GO:1902584]; regulation of salicylic acid biosynthetic process [GO:0080142]; regulation of systemic acquired resistance [GO:0010112]; regulation of transcription, DNA-templated [GO:0006355]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; response to molecule of bacterial origin [GO:0002237]; response to UV-B [GO:0010224]; salicylic acid biosynthetic process [GO:0009697]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; calmodulin binding [GO:0005516]; response to stress [GO:0006950] DEVELOPMENTAL STAGE: In seedlings, present in roots, except in tips, leaves and petioles. In inflorescence and flowers, accumulates in sepals, carpels (e.g. styles and floral nectars) and stamens (e.g. filaments and vascular tissue of anthers), but not in petals or stigma. {ECO:0000269|PubMed:22466450}. TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, inflorescences and flowers, and, to a lower extent, in siliques. Particularly present in guard cells. {ECO:0000269|PubMed:22466450}. locus:2148548; AT5G26920 Cam-binding protein NA NA NA NA NA NA NA ENOG411EECS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kelch motif NA NA NA NA NA NA NA ENOG411EECR UMAMIT8 F4JMI7,A0A1P8B939,A0A1P8B932 WTR34_ARATH,A0A1P8B939_ARATH,A0A1P8B932_ARATH WAT1-related protein At4g16620,WAT1-related protein 38311,27862,29009 WAT1-related protein At4g16620,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2130908; AT4G16620 EamA-like transporter family NA NA NA NA NA NA NA ENOG411EECQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione S-transferase GSTU6, putative, expressed (Os10g0527400 protein) (Putative glutathione S-transferase),Os10g0527601 protein Q8RUJ2,C7J7M6 Q8RUJ2_ORYSJ,C7J7M6_ORYSJ LOC_Os10g38340 Os10g0527400 OsJ_32225 OSJNBa0034L04.36 OSJNBb0005J14.19 OSNPB_100527400,Os10g0527601 OSNPB_100527601 ENOG411EECP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EECZ AT59 O64510,Q9M9S2 PLY6_ARATH,PLY3_ARATH Probable pectate lyase 6 (EC 4.2.2.2),Probable pectate lyase 3 (EC 4.2.2.2) (Pectate lyase A2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. ARA:AT2G02720-MONOMER;,ARA:AT1G14420-MONOMER; 4.2.2.2 51258,51455 Probable pectate lyase 6 (EC 4.2.2.2),Probable pectate lyase 3 (EC 4.2.2.2) (Pectate lyase A2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490],metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490]; plant-type cell wall organization [GO:0009664] TISSUE SPECIFICITY: Expressed in pollen, but not in leaves. {ECO:0000269|PubMed:9278171}. locus:2058842;,locus:2012562; AT2G02720,AT1G14420 Pectate lyase NA NA NA NA NA NA NA ENOG411EECY GA20OX5 Q4PT02 GAOX5_ARATH Gibberellin 20 oxidase 5 (EC 1.14.11.-) (GA 20-oxidase 5) (Gibberellin C-20 oxidase 5) FUNCTION: Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. {ECO:0000250}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. 1.14.11.- 43161 Gibberellin 20 oxidase 5 (EC 1.14.11.-) (GA 20-oxidase 5) (Gibberellin C-20 oxidase 5) gibberellin 20-oxidase activity [GO:0045544]; metal ion binding [GO:0046872]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to light stimulus [GO:0009416]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in 3-day-old seedlings and siliques. Detected in dry seeds, roots, old leaves and inflorescences. {ECO:0000269|PubMed:18069939}. locus:2037159; AT1G44090 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EECX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Expressed protein (Os03g0141100 protein) (Os05g0208600 protein) (cDNA clone:002-171-G04, full insert sequence),OSJNBb0050O03.9 protein (Os04g0117150 protein),Os06g0210700 protein,Os03g0157450 protein Q75IL0,Q7XT13,A0A0P0WUB3,A0A0P0VT92 Q75IL0_ORYSJ,Q7XT13_ORYSJ,A0A0P0WUB3_ORYSJ,A0A0P0VT92_ORYSJ Os05g0208600 LOC_Os03g04760 Os03g0141100 OSJNBb0016G07.2 OSNPB_030141100 OSNPB_050208600,OSJNBb0050O03.9 Os04g0117150 OSNPB_040117150,Os06g0210700 OSNPB_060210700,Os03g0157450 OSNPB_030157450 ENOG411DSC5 CRR6 O82258,Q3EBE3 CRR6_ARATH,Q3EBE3_ARATH Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic,Chlororespiratory reduction 6 DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:16648216, ECO:0000269|PubMed:20444231}. FUNCTION: Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron transport chain. May function in assembly or stabilization of the NDH complex (PubMed:16648216, PubMed:20444231). Required for the accumulation of NDH subcomplex A, which is a core part of NDH. May be involved in post-translational steps during the biogenesis of subcomplex A (PubMed:20444231). {ECO:0000269|PubMed:16648216, ECO:0000269|PubMed:20444231}. 28028,22838 Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic,Chlororespiratory reduction 6 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex assembly [GO:0010275] locus:2043338; AT2G47910 Domain of unknown function (DUF1817) Os08g0167500 protein (Putative ubiquinone oxidoreductase subunit 1) (cDNA clone:006-206-A02, full insert sequence) Q6ZCP8 Q6ZCP8_ORYSJ Os08g0167500 Os08g0167500 OsJ_26178 OSNPB_080167500 P0462E11.7 ENOG411EEC7 RDL6 F4JNL3 RDL6_ARATH Probable cysteine protease RDL6 (EC 3.4.22.-) (RD21A-like protease 6) FUNCTION: Probable thiol protease. {ECO:0000250|UniProtKB:P43297}. 3.4.22.- 39605 Probable cysteine protease RDL6 (EC 3.4.22.-) (RD21A-like protease 6) extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2117979; AT4G23520 Inhibitor_I29 NA NA NA NA NA NA NA ENOG411EEC6 IGMT5 Q9SRD4 IGMT5_ARATH Indole glucosinolate O-methyltransferase 5 (EC 2.1.1.-) FUNCTION: Involved in indole glucosinolate biosynthesis. Catalyzes methoxylation reactions of the glucosinolate indole ring. Converts the hydroxy intermediates 4-hydroxy-indol-3-yl-methylglucosinolate (4OH-I3M) and 1-hydroxy-indol-3-yl-methylglucosinolate (1OH-I3M) to 4-methoxy-indol-3-yl-methylglucosinolate (4MO-I3M) and 1-methoxy-indol-3-yl-methylglucosinolate, respectively. {ECO:0000250|UniProtKB:Q9LPU5}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:AT1G76790-MONOMER; R-ATH-209931; 2.1.1.- 40222 Indole glucosinolate O-methyltransferase 5 (EC 2.1.1.-) O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; indole glucosinolate biosynthetic process [GO:0009759] locus:2030081; AT1G76790 O-methyltransferase family 2 protein NA NA NA NA NA NA NA ENOG411EEC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os03g0355300 protein),Expressed protein (Os03g0355100 protein) (cDNA clone:J023075M21, full insert sequence),Os03g0726002 protein,Os03g0725900 protein Q10LA3,Q10LA5,A0A0P0W2V5,A0A0N7KHZ2 Q10LA3_ORYSJ,Q10LA5_ORYSJ,A0A0P0W2V5_ORYSJ,A0A0N7KHZ2_ORYSJ Os03g0355300 LOC_Os03g23920 Os03g0355300 OSNPB_030355300,Os03g0355100 LOC_Os03g23900 Os03g0355100 OSNPB_030355100,Os03g0726002 OSNPB_030726002,Os03g0725900 OSNPB_030725900 ENOG411EEC1 MNF13.11 Q9FM39 Q9FM39_ARATH At5g40590 (Cysteine/Histidine-rich C1 domain family protein) 26377 At5g40590 (Cysteine/Histidine-rich C1 domain family protein) cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2168728; AT5G40590 C1 domain NA NA NA NA NA NA NA ENOG411EEC0 Q9FKZ7,Q9LQB0 FB301_ARATH,FB80_ARATH Putative F-box protein At5g66830,F-box protein At1g69090 45737,46831 Putative F-box protein At5g66830,F-box protein At1g69090 locus:2174949;,locus:2033251; AT5G66830,AT1G69090 F-Box protein NA NA NA NA NA NA NA ENOG411EEC9 VSR5 O64758 VSR5_ARATH Vacuolar-sorting receptor 5 (AtVSR5) (BP80-like protein e) (AtBP80e) (Epidermal growth factor receptor-like protein 5) (AtELP5) FUNCTION: Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. {ECO:0000250}. 69257 Vacuolar-sorting receptor 5 (AtVSR5) (BP80-like protein e) (AtBP80e) (Epidermal growth factor receptor-like protein 5) (AtELP5) clathrin-coated vesicle membrane [GO:0030665]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; calcium ion binding [GO:0005509]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:12493849}. locus:2044782; AT2G34940 EGF_like NA NA NA NA NA NA NA ENOG411EEC8 WAVH2 Q0WQX9 Q0WQX9_ARATH Zinc finger (C3HC4-type RING finger) family protein FUNCTION: Probable E3 ubiquitin-protein ligase involved in the regulation of root growth. Acts as positive regulator of root gravitropism. {ECO:0000269|PubMed:22122664}. 78579 Zinc finger (C3HC4-type RING finger) family protein locus:504954891; AT5G65683 von Willebrand factor type A domain NA NA NA NA NA NA NA ENOG411DSCF CSN6A Q8W206 CSN6A_ARATH COP9 signalosome complex subunit 6a (AtCSN6a) (Signalosome subunit 6a) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions, due to the redundancy with CSN6A. Csn6a and csn6b double mutants are lethal at the seedling stage. {ECO:0000269|PubMed:17307927}. Mutants display a mild partial photomorphogenic phenotype in the dark and in blue light characterized by shorter hypocotyls with respect to wildtype plants grown under the same conditions.,No detectable changes in the cellular pools of COP9 signalosome complex subunits.,The mutant do not display any obvious morphological defects in white light and after the seedling stage.,In the dark and under all light conditions tested loss of function for both CSN6 proteins (double homozygous progeny) results in lethality at the seedling stage and in a photomorphogenic phenotype indistinguishable from the fusca-type phenotype of the null cop/det/fus mutants described for the other CSN subunits.,In the double homozygous progeny significant reduction of CSN1 CSN3 CSN4 CSN7 and CSN8. The only subunits not affected are CSN2 and CSN5.,In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,Mutation is lethal in the homozygous state. Short hypocotyl-X. Deng-2007 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. Essential for the structural integrity of the CSN holocomplex (PubMed:17307927). {ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:11701877, ECO:0000269|PubMed:17307927}. MISCELLANEOUS: Although strongly related to metalloprotease proteins, it lacks the JAMM motif that probably constitutes the catalytic center. Its function as protease is therefore unsure. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 35659 COP9 signalosome complex subunit 6a (AtCSN6a) (Signalosome subunit 6a) COP9 signalosome [GO:0008180]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; COP9 signalosome assembly [GO:0010387]; multicellular organism development [GO:0007275]; protein catabolic process [GO:0030163]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2177601; AT5G56280 COP9 signalosome complex subunit Mov34/MPN/PAD-1 family protein, expressed (Os12g0621900 protein) (cDNA clone:J033100G22, full insert sequence),Mov34/MPN/PAD-1 family protein, expressed (Os12g0622900 protein),Mov34/MPN/PAD-1 family protein, expressed (Os12g0621900 protein),Os08g0500000 protein (Putative COP9 complex subunit 6) (cDNA clone:001-010-D12, full insert sequence),Os12g0621900 protein (Fragment),Os10g0506300 protein Q2QM03,Q2QLZ5,Q2QM04,Q6ZKM2,A0A0P0YC94,A0A0P0XWI9 Q2QM03_ORYSJ,Q2QLZ5_ORYSJ,Q2QM04_ORYSJ,Q6ZKM2_ORYSJ,A0A0P0YC94_ORYSJ,A0A0P0XWI9_ORYSJ Os12g0621900 LOC_Os12g42730 OSNPB_120621900,Os12g0622900 LOC_Os12g42810 Os12g0622900 OsJ_36920 OSNPB_120622900,Os08g0500000 OJ1118_A06.12 OsJ_27828 OSNPB_080500000,Os12g0621900 OSNPB_120621900,Os10g0506300 OSNPB_100506300 ENOG411DSCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Embryo-specific protein 3 (ATS3) Os02g0753300 protein (Putative elicitor-inducible protein EIG-J7) (cDNA clone:001-045-F02, full insert sequence) (cDNA clone:J013038J04, full insert sequence) Q6ZGP5 Q6ZGP5_ORYSJ Os02g0753300 OJ1288_G09.19 OSNPB_020753300 ENOG411DSCT AHL13,AHL8 Q940I0,Q9FIR1 AHL13_ARATH,AHL8_ARATH AT-hook motif nuclear-localized protein 13 (AT-hook protein 2),AT-hook motif nuclear-localized protein 8 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 46277,40834 AT-hook motif nuclear-localized protein 13 (AT-hook protein 2),AT-hook motif nuclear-localized protein 8 cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2141045;,locus:2178505; AT4G17950,AT5G46640 Domain of unknown function (DUF296) Os10g0572900 protein (Fragment),Os10g0572900 protein Q0IVG1,A0A0P0XY24 Q0IVG1_ORYSJ,A0A0P0XY24_ORYSJ Os10g0572900 OSNPB_100572900 ENOG411DSCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: leprecan-like Expressed protein (Os03g0238700 protein) (cDNA clone:J033043K11, full insert sequence) Q10PC9 Q10PC9_ORYSJ Os03g0238700 LOC_Os03g13550 Os03g0238700 OSNPB_030238700 ENOG411DSCP NAC037,NAC076,VND1 Q9SL41,O65508,A0A1P8AYI5,A0A1P8B7X6 NAC37_ARATH,NAC76_ARATH,A0A1P8AYI5_ARATH,A0A1P8B7X6_ARATH NAC domain-containing protein 37 (ANAC037) (Protein VASCULAR RELATED NAC-DOMAIN 1),NAC domain-containing protein 76 (ANAC076) (Protein VASCULAR RELATED NAC-DOMAIN 2),Vascular related NAC-domain protein 1,NAC domain containing protein 76 FUNCTION: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. 42477,43517,31874,44018 NAC domain-containing protein 37 (ANAC037) (Protein VASCULAR RELATED NAC-DOMAIN 1),NAC domain-containing protein 76 (ANAC076) (Protein VASCULAR RELATED NAC-DOMAIN 2),Vascular related NAC-domain protein 1,NAC domain containing protein 76 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; callus formation [GO:1990110]; cell wall organization [GO:0071555]; multicellular organism development [GO:0007275]; positive regulation of secondary cell wall biogenesis [GO:1901348]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351]; xylem vessel member cell differentiation [GO:0048759],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell wall organization [GO:0071555]; multicellular organism development [GO:0007275]; positive regulation of secondary cell wall biogenesis [GO:1901348]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; xylem vessel member cell differentiation [GO:0048759],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. TISSUE SPECIFICITY: Expressed in root metaxylem pole and in shoot pre-procambium and procambium (PubMed:18445131). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.,TISSUE SPECIFICITY: Detected in root protoxylem and metaxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls (PubMed:18445131). Expressed in roots, hypocotyls, cotyledons and leaves. Present in developing xylems (PubMed:16103214, PubMed:16581911). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. locus:2060979;,locus:2122219; AT2G18060,AT4G36160 NAC domain-containing protein No apical meristem, putative, expressed (Os10g0532000 protein) (Secondary wall NAC transcription factor 4) (cDNA clone:002-101-D07, full insert sequence) Q109C3 Q109C3_ORYSJ Os10g0532000 LOC_Os10g38834 Os10g0532000 OSNPB_100532000 ENOG411DSCY F4J3Q1 F4J3Q1_ARATH Endoribonuclease R-ATH-5358493; 79899 Endoribonuclease locus:2100910; AT3G04480 meiotically up-regulated gene 71 Os02g0810450 protein B9F460 B9F460_ORYSJ Os02g0810450 OsJ_08818 OSNPB_020810450 ENOG411DVGZ Q8VY50,A0A1P8B814 Q8VY50_ARATH,A0A1P8B814_ARATH Kinesin-like protein (Uncharacterized protein At4g24170),Kinesin-like protein 34902,26526 Kinesin-like protein (Uncharacterized protein At4g24170),Kinesin-like protein locus:505006519; AT4G24175 kinesin heavy chain isolog OSJNBb0026I12.6 protein (Os04g0250700 protein) (cDNA clone:J013090L20, full insert sequence) Q7XNX4 Q7XNX4_ORYSJ Os04g0250700 OsJ_14229 OSJNBb0026I12.6 OSNPB_040250700 ENOG411DVGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potassium transporter Probable potassium transporter 13 (OsHAK13) Q652J4 HAK13_ORYSJ HAK13 Os06g0671000 LOC_Os06g45940 OSJNBa0032M14.1 P0485A07.11 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DVGX Q94BX2,Q93ZY1 Q94BX2_ARATH,Q93ZY1_ARATH AT3g50910/F18B3_190 (Netrin receptor DCC),Bacteriophage N4 adsorption B protein (Uncharacterized protein At5g66480) 49636,49560 AT3g50910/F18B3_190 (Netrin receptor DCC),Bacteriophage N4 adsorption B protein (Uncharacterized protein At5g66480) integral component of membrane [GO:0016021] locus:2077977;,locus:2154935; AT3G50910,AT5G66480 NA Os02g0704600 protein (cDNA, clone: J065163N21, full insert sequence) Q6YVI2 Q6YVI2_ORYSJ Os02g0704600 Os02g0704600 OsJ_08076 OSNPB_020704600 P0724B10.36 ENOG411DVGW CKL4,CKL3 Q8LPI7,Q93Z18 CKL4_ARATH,CKL3_ARATH Casein kinase 1-like protein 4 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 4) (CK1.4),Casein kinase 1-like protein 3 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 3) (CK1.3) DISRUPTION PHENOTYPE: Hypersensitivity to blue light (BL) leading to shortened hypocotyls in BL. {ECO:0000269|PubMed:23897926}. FUNCTION: Protein kinase involved in blue light responses (e.g. hypocotyl elongation and flowering) by phosphorylating CRY2 to reduce its stability. {ECO:0000269|PubMed:23897926}. 2.7.11.1 46709,46891 Casein kinase 1-like protein 4 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 4) (CK1.4),Casein kinase 1-like protein 3 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 3) (CK1.3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; blue light signaling pathway [GO:0009785]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; photomorphogenesis [GO:0009640]; protein autophosphorylation [GO:0046777]; regulation of cell shape [GO:0008360]; response to blue light [GO:0009637],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; blue light signaling pathway [GO:0009785]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; photomorphogenesis [GO:0009640]; regulation of cell shape [GO:0008360]; response to blue light [GO:0009637] TISSUE SPECIFICITY: Expressed in seedlings, stems, leaves and flowers. {ECO:0000269|PubMed:23897926}. locus:2117843;,locus:2117778; AT4G28860,AT4G28880 Casein Kinase Os02g0280400 protein (cDNA clone:J013095J03, full insert sequence),Os01g0231500 protein (Putative dual specificity kinase 1) (cDNA clone:J013098O18, full insert sequence),Os02g0280400 protein,Os01g0231500 protein Q6ES24,Q5NB70,A0A0P0VHN6,A0A0P0V007 Q6ES24_ORYSJ,Q5NB70_ORYSJ,A0A0P0VHN6_ORYSJ,A0A0P0V007_ORYSJ P0669G10.5-1 Os02g0280400 OsJ_06255 OSNPB_020280400,P0431F01.19-1 Os01g0231500 OSNPB_010231500,Os02g0280400 OSNPB_020280400,Os01g0231500 OSNPB_010231500 ENOG411DVGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0571300 protein) Q2QNC1 Q2QNC1_ORYSJ LOC_Os12g38320 Os12g0571300 OSNPB_120571300 ENOG411DVGU RPS2D,RPS2C,RPS2A,RPS2B; ; Q9SCM3,P49688,Q8L8Y0,Q93VB8 RS24_ARATH,RS23_ARATH,RS21_ARATH,RS22_ARATH 40S ribosomal protein S2-4,40S ribosomal protein S2-3,40S ribosomal protein S2-1,40S ribosomal protein S2-2 R-ATH-156827;R-ATH-1799339;R-ATH-6791226;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 30116,30879,30741,30771 40S ribosomal protein S2-4,40S ribosomal protein S2-3,40S ribosomal protein S2-1,40S ribosomal protein S2-2 cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],chloroplast [GO:0009507]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cell wall [GO:0005618]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2103539;,locus:2054406;,locus:2016585;,locus:2826968;locus:2826988;locus:504956181; AT3G57490,AT2G41840,AT1G58380,AT1G58684AT1G58983;AT1G59359; 40S ribosomal protein 40S ribosomal protein S2, putative, expressed (Os03g0807800 protein) (Putative 40S ribosomal protein S2) (cDNA clone:J013001C14, full insert sequence),Os07g0207400 protein (Fragment),Os07g0419900 protein Q84M35,Q0D7V1,A0A0P0X4X0 Q84M35_ORYSJ,Q0D7V1_ORYSJ,A0A0P0X4X0_ORYSJ Os03g0807800 LOC_Os03g59310 Os03g0807800 OSJNBa0059E14.8 OSNPB_030807800,Os07g0207400 Os07g0207400 OSNPB_070207400,Os07g0419900 OSNPB_070419900 ENOG411DVGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411DVGS SD22,RLK4 Q39203,A0A1P8B912 SD22_ARATH,A0A1P8B912_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 (EC 2.7.11.1) (Receptor-like kinase 4) (S-domain-2 (SD2) receptor kinase 2) (SD2-2),Receptor-like protein kinase 4 FUNCTION: Serine/threonine-protein kinase. {ECO:0000269|Ref.4}. 2.7.11.1 88493,88437 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 (EC 2.7.11.1) (Receptor-like kinase 4) (S-domain-2 (SD2) receptor kinase 2) (SD2-2),Receptor-like protein kinase 4 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] TISSUE SPECIFICITY: Expressed in the shoot apex and roots, specifically in lateral roots and at the root-hypocotyl transition zone. {ECO:0000269|Ref.4}. AT4G00340 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DVGR CYP77A4,T32M21_230,F13M14.16,F13M14.15 Q9LZ31,Q9LZ62,Q9SQY6,Q9SQY7 C77A4_ARATH,Q9LZ62_ARATH,Q9SQY6_ARATH,Q9SQY7_ARATH Cytochrome P450 77A4 (EC 1.14.-.-) (Fatty acid epoxidase),Cytochrome P450, family 77, subfamily A, polypeptide 9 (Cytochrome P450-like protein),Cytochrome P450 superfamily protein (Cytochrome P450, putative) (Putative cytochrome P450; 47418-45874),At3g10570 (Cytochrome P450, family 77, subfamily A, polypeptide 6) (Cytochrome P450, putative) (Putative cytochrome P450; 45201-43660) Complete loss of cuticle and nanoridges on petals-F. Beisson-2009 FUNCTION: Catalyzes the epoxidation of physiological unsaturated fatty acids in vitro. Can use laurate, oleate, linoleate, linolenate and vernolate as substrate. {ECO:0000269|PubMed:19120447}. ARA:AT5G04660-MONOMER;MetaCyc:AT5G04660-MONOMER;,ARA:AT5G04630-MONOMER;,ARA:AT3G10560-MONOMER; 1.14.-.- 58138,57778,58048,58230 Cytochrome P450 77A4 (EC 1.14.-.-) (Fatty acid epoxidase),Cytochrome P450, family 77, subfamily A, polypeptide 9 (Cytochrome P450-like protein),Cytochrome P450 superfamily protein (Cytochrome P450, putative) (Putative cytochrome P450; 47418-45874),At3g10570 (Cytochrome P450, family 77, subfamily A, polypeptide 6) (Cytochrome P450, putative) (Putative cytochrome P450; 45201-43660) integral component of membrane [GO:0016021]; membrane [GO:0016020]; fatty acid in-chain hydroxylase activity [GO:0052722]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cutin biosynthetic process [GO:0010143]; fatty acid oxidation [GO:0019395]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; fatty acid in-chain hydroxylase activity [GO:0052722]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cutin biosynthetic process [GO:0010143]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; fatty acid in-chain hydroxylase activity [GO:0052722]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cutin biosynthetic process [GO:0010143]; double fertilization forming a zygote and endosperm [GO:0009567]; pollen tube development [GO:0048868]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; fatty acid in-chain hydroxylase activity [GO:0052722]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cutin biosynthetic process [GO:0010143]; flower development [GO:0009908]; secondary metabolite biosynthetic process [GO:0044550] locus:2180213;,locus:2184412;,locus:2075830;,locus:2075810; AT5G04660,AT5G04630,AT3G10560,AT3G10570 cytochrome P450 Os04g0407900 protein (Fragment) Q0JDF4 Q0JDF4_ORYSJ Os04g0407900 Os04g0407900 OSNPB_040407900 ENOG411DVGQ BSK4,BR-signaling kinase 3,BSK7 Q9FHD7,A0A1P8AT62,Q8W4L3,F4HU55,A0A1P8AT60,F4I3M3 Y5126_ARATH,A0A1P8AT62_ARATH,Q8W4L3_ARATH,F4HU55_ARATH,A0A1P8AT60_ARATH,F4I3M3_ARATH Probable serine/threonine-protein kinase At5g41260 (EC 2.7.11.1),Kinase with tetratricopeptide repeat domain-containing protein,BR-signaling kinase 3 (Uncharacterized protein At4g00710) (Uncharacterized protein At4g00710; F6N23.9) shorter hypocotyl length when grown in the dark on regular medium or medium containing the BR biosynthetic inhibitor brassinazole (BRZ). reduced responses to BL in hypocotyl elongation root inhibition and expression of the BZR1 target gene DWF4 and the BES1 target gene SAUR-Ac. Short hypocotyl in the dark; Insensitive to brassinosteroids-Z. Wang-2008 FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. Functions redundantly with BSK3, BSK4, BSK6 and BSK7 (PubMed:23496207). Involved in the regulation of sucrose-phosphate synthase 1 (SPS1) in the context of sucrose resuply after starvation. Activates BSL2, a phosphatase that may dephosphorylate SPS1, leading to the activation of SPS1 (PubMed:24924143). {ECO:0000269|PubMed:23496207, ECO:0000269|PubMed:24924143}.,FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. Mediates signal transduction from BRI1 by functioning as substrate of BRI1 (PubMed:18653891). Functions redundantly with BSK4, BSK6, BSK7 and BSK8 (PubMed:23496207). {ECO:0000269|PubMed:18653891, ECO:0000269|PubMed:23496207}.,FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. Functions redundantly with BSK3, BSK6, BSK7 and BSK8. {ECO:0000269|PubMed:23496207}.,FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1. Functions redundantly with BSK3, BSK5, BSK6 and BSK8. {ECO:0000269|PubMed:23496207}. 2.7.11.1 54625,45606,54914,54039,53015,54798 Probable serine/threonine-protein kinase At5g41260 (EC 2.7.11.1),Kinase with tetratricopeptide repeat domain-containing protein,BR-signaling kinase 3 (Uncharacterized protein At4g00710) (Uncharacterized protein At4g00710; F6N23.9) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; brassinosteroid mediated signaling pathway [GO:0009742]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2155115;,locus:2127118;,locus:2198160;,locus:2031279; AT5G41260,AT4G00710,AT1G01740,AT1G63500 ATP binding binding protein kinase protein serine threonine kinase protein tyrosine kinase Probable serine/threonine-protein kinase BSK3 (EC 2.7.11.1) (Brassinosteroid-signaling kinase 3) (OsBSK3) (Receptor-like cytoplasmic kinase 173) (OsRLCK173) B9FDE0 BSK3_ORYSJ BSK3 RLCK173 Os04g0684200 LOC_Os04g58750 OsJ_16683 OSJNBa0088H09.6 FUNCTION: Probable serine/threonine kinase that acts as positive regulator of brassinosteroid (BR) signaling downstream of BRI1. {ECO:0000269|PubMed:26697897}. ENOG411DVGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM LIM domain containing protein, expressed (Os10g0503100 protein) (Putative LIM domain protein) (cDNA clone:J023131K23, full insert sequence) Q9FVZ1 Q9FVZ1_ORYSJ Os10g0503100 LOC_Os10g35930 Os10g0503100 OsJ_32076 OSJNBb0073N24.9 OSNPB_100503100 ENOG411DVGN NMD3 Q9SI58 Q9SI58_ARATH Nonsense-mediated mRNA decay NMD3 family protein (Putative nonsense-mediated mRNA decay protein) FUNCTION: Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit. {ECO:0000256|RuleBase:RU364108}. 59294 Nonsense-mediated mRNA decay NMD3 family protein (Putative nonsense-mediated mRNA decay protein) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ribosomal large subunit binding [GO:0043023]; endoplasmic reticulum organization [GO:0007029]; plant-type secondary cell wall biogenesis [GO:0009834]; protein export from nucleus [GO:0006611]; ribosomal large subunit export from nucleus [GO:0000055] locus:2044299; AT2G03820 60S ribosomal export protein 60S ribosomal export protein NMD3,Os05g0333000 protein,Os10g0573900 protein (Fragment) Q336P7,A0A0P0WL47,A0A0P0XXI1 Q336P7_ORYSJ,A0A0P0WL47_ORYSJ,A0A0P0XXI1_ORYSJ Os10g0573900 LOC_Os10g42320 Os10g0573900 OSNPB_100573900,Os05g0333000 OSNPB_050333000,Os10g0573900 OSNPB_100573900 FUNCTION: Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit. {ECO:0000256|RuleBase:RU364108}. ENOG411DVGM MCL19.11 Q9FNL6 Q9FNL6_ARATH Emb|CAB89385.1 (Expressed protein) 28167 Emb|CAB89385.1 (Expressed protein) integral component of membrane [GO:0016021] locus:2161348; AT5G46060 Protein of unknown function DUF599 Os08g0377500 protein (cDNA clone:006-210-H02, full insert sequence) (cDNA clone:J033051C18, full insert sequence) Q8GVU8 Q8GVU8_ORYSJ OJ1705_C03.129 Os08g0377500 OsJ_27125 OSNPB_080377500 ENOG411DVGK MJC20.26 Q9FHX0 Q9FHX0_ARATH Glutathione S-transferase family protein (Similarity to glutathione-S-transferase/glutaredoxin) (Uncharacterized protein At5g42150) ARA:AT5G42150-MONOMER; R-ATH-2162123;R-ATH-6798695; 35550 Glutathione S-transferase family protein (Similarity to glutathione-S-transferase/glutaredoxin) (Uncharacterized protein At5g42150) mitochondrion [GO:0005739]; electron carrier activity [GO:0009055]; prostaglandin-E synthase activity [GO:0050220]; protein disulfide oxidoreductase activity [GO:0015035]; transferase activity [GO:0016740]; cell redox homeostasis [GO:0045454] locus:2165785; AT5G42150 prostaglandin E synthase 2-like OSJNBb0043H09.9 protein (Os04g0244400 protein) (cDNA clone:006-209-A12, full insert sequence) (cDNA clone:J033150E08, full insert sequence) Q7XW88 Q7XW88_ORYSJ Os04g0244400 OsJ_14026 OSJNBb0043H09.9 OSNPB_040244400 ENOG411DVGJ ZFWD1,ZFWD2 Q9FNZ2,Q9FNZ1 C3H48_ARATH,C3H63_ARATH Zinc finger CCCH domain-containing protein 48 (AtC3H48) (Zinc finger CCCH domain and WD40 repeat-containing protein 1),Zinc finger CCCH domain-containing protein 63 (AtC3H63) (Zinc finger CCCH domain and WD40 repeat-containing protein 2) 46662,47987 Zinc finger CCCH domain-containing protein 48 (AtC3H48) (Zinc finger CCCH domain and WD40 repeat-containing protein 1),Zinc finger CCCH domain-containing protein 63 (AtC3H63) (Zinc finger CCCH domain and WD40 repeat-containing protein 2) DNA binding [GO:0003677]; metal ion binding [GO:0046872],DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729] locus:2131799;,locus:2173103; AT4G25440,AT5G51980 WD domain G-beta repeat Os04g0572700 protein (Fragment) A0A0P0WDQ5 A0A0P0WDQ5_ORYSJ Os04g0572700 OSNPB_040572700 ENOG411DVGI SEC8 Q93YU5,A0A1I9LSY6 SEC8_ARATH,A0A1I9LSY6_ARATH Exocyst complex component SEC8 (AtSec8) (Exocyst complex component 4),Subunit of exocyst complex 8 DISRUPTION PHENOTYPE: Male gametophytic lethal due to defect in pollen germination and pollen tube growth. {ECO:0000269|PubMed:16040664, ECO:0000269|PubMed:18492870}. Null: Complete male gametophyte defective; Knockdown: Male gametophyte defective; Homozygotes appear wild type-J. Fowler-2005 FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in secretory processes during cell plate initiation, cell plate maturation and formation of new primary cell wall.; FUNCTION: Participates in polarized pectin delivery required for the polarized development of the mucilage-producing volcano cells of the seed coat. R-ATH-5620916; 116605,114453 Exocyst complex component SEC8 (AtSec8) (Exocyst complex component 4),Subunit of exocyst complex 8 cell wall [GO:0005618]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; acceptance of pollen [GO:0060321]; exocytosis [GO:0006887]; Golgi to plasma membrane transport [GO:0006893]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; protein targeting to membrane [GO:0006612]; vesicle docking involved in exocytosis [GO:0006904]; vesicle targeting [GO:0006903],exocyst [GO:0000145]; protein transport [GO:0015031]; vesicle docking involved in exocytosis [GO:0006904] locus:2076249; AT3G10380 exocyst complex Exocyst complex component Sec8-like (Os08g0318500 protein) Q69PQ1 Q69PQ1_ORYSJ P0406D01.114 Os08g0318500 OSNPB_080318500 ENOG411DVGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411DVGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os08g0262500 protein (Putative cytochrome P450) (cDNA clone:001-007-F05, full insert sequence) (cDNA clone:006-203-C11, full insert sequence),Cytochrome P450 family protein, expressed (Os03g0138200 protein) (cDNA clone:001-203-H07, full insert sequence),Os08g0263000 protein (Putative cytochrome P450),Os08g0264700 protein Q6YXE1,Q10S17,Q6YXD6,A0A0P0XDN9 Q6YXE1_ORYSJ,Q10S17_ORYSJ,Q6YXD6_ORYSJ,A0A0P0XDN9_ORYSJ Os08g0262500 OSJNBb0005C03.18 OSNPB_080262500,Os03g0138200 LOC_Os03g04530 Os03g0138200 OSNPB_030138200,Os08g0263000 Os08g0263000 OSJNBb0005C03.29 OSNPB_080263000,Os08g0264700 OSNPB_080264700 ENOG411DVGF F4IBA7 F4IBA7_ARATH Transmembrane protein 37381 Transmembrane protein integral component of membrane [GO:0016021] locus:504956195; AT1G52155 NA Os11g0466300 protein A0A0P0Y2J1 A0A0P0Y2J1_ORYSJ Os11g0466300 OSNPB_110466300 ENOG411DVGE Q6NL13 Q6NL13_ARATH At5g37840 (Plastid movement impaired protein) 23866 At5g37840 (Plastid movement impaired protein) locus:2156035; AT5G37840 NA Os06g0260000 protein Q0DD34 Q0DD34_ORYSJ Os06g0260000 Os06g0260000 OSNPB_060260000 ENOG411DVGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phenazine biosynthesis-like protein Os01g0266500 protein (Putative MAWD binding protein) (cDNA clone:J033024I08, full insert sequence) Q9SDD7 Q9SDD7_ORYSJ Os01g0266500 OSNPB_010266500 P0011D01.4 P0499C11.32 ENOG411DVGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os05g0529700 protein (cDNA clone:002-150-B07, full insert sequence),Os05g0529700 protein Q65XB8,A0A0P0WQ21,A0A0P0WQ87 Q65XB8_ORYSJ,A0A0P0WQ21_ORYSJ,A0A0P0WQ87_ORYSJ Os05g0529700 OJ1187_E11.20 OsJ_19300 OSNPB_050529700,Os05g0529700 OSNPB_050529700 ENOG411DVGB GUX4,GUX5 Q9FZ37,F4HZC3 GUX4_ARATH,GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 (UDP-GlcA:xylan glucuronyltransferase 4) (EC 2.4.1.-) (Glycogenin-like protein 4) (Plant glycogenin-like starch initiation protein 4) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 4) (AtGUX4),Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 (UDP-GlcA:xylan glucuronyltransferase 5) (EC 2.4.1.-) (Glycogenin-like protein 5) (Plant glycogenin-like starch initiation protein 5) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 5) (AtGUX5) FUNCTION: May be involved in the substitutions of the xylan backbone in stem glucuronoxylan. {ECO:0000250}. R-ATH-5357572;R-ATH-6798695;R-ATH-70221; 2.4.1.- 64709,65633 Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 (UDP-GlcA:xylan glucuronyltransferase 4) (EC 2.4.1.-) (Glycogenin-like protein 4) (Plant glycogenin-like starch initiation protein 4) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 4) (AtGUX4),Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 (UDP-GlcA:xylan glucuronyltransferase 5) (EC 2.4.1.-) (Glycogenin-like protein 5) (Plant glycogenin-like starch initiation protein 5) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 5) (AtGUX5) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucuronosyltransferase activity [GO:0015020]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2011045;,locus:2036024; AT1G54940,AT1G08990 plant glycogenin-like starch initiation protein NA NA NA NA NA NA NA ENOG411DVGA Q1PE49,F4JU48 4ON1_ARATH,F4JU48_ARATH Protein At-4/1 (Tomato spotted wilt virus movement protein-interacting protein 4/1) (At-4/1),4/1 protein short form protein FUNCTION: Involved in intra- and inter-cellular trafficking through plasmodesmata (PD). {ECO:0000269|PubMed:16903353}. 29136,31421 Protein At-4/1 (Tomato spotted wilt virus movement protein-interacting protein 4/1) (At-4/1),4/1 protein short form protein endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506]; intercellular transport [GO:0010496]; intracellular transport [GO:0046907]; viral process [GO:0016032] TISSUE SPECIFICITY: Expressed in leaves (at protein level). {ECO:0000269|PubMed:16903353}. locus:2120775; AT4G26020 NA Os02g0148600 protein (Putative 4/1 protein) Q6Z432 Q6Z432_ORYSJ Os02g0148600 OsJ_05380 OSNPB_020148600 P0479D12.17 ENOG411DVG9 LON2 O64948 LONP2_ARATH Lon protease homolog 2, peroxisomal (EC 3.4.21.53) Short roots; Insensitive to IBA-B. Bartel-2009 FUNCTION: ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix (By similarity). Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import. {ECO:0000255|HAMAP-Rule:MF_03121, ECO:0000269|PubMed:19748917}. 3.4.21.53; 3.4.21.53 97862 Lon protease homolog 2, peroxisomal (EC 3.4.21.53) organelle lumen [GO:0043233]; peroxisomal matrix [GO:0005782]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; serine-type endopeptidase activity [GO:0004252]; growth [GO:0040007]; lateral root development [GO:0048527]; misfolded or incompletely synthesized protein catabolic process [GO:0006515]; protein import into peroxisome matrix, docking [GO:0016560]; protein processing [GO:0016485] locus:2171037; AT5G47040 ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import (By similarity) Lon protease homolog 2, peroxisomal (EC 3.4.21.53),Os09g0533400 protein (Fragment) Q0J032,A0A0P0XPR1 LONP2_ORYSJ,A0A0P0XPR1_ORYSJ Os09g0533400 LOC_Os09g36300 OJ1112_E07.9 OsJ_30122 P0515E01.28,Os09g0533400 OSNPB_090533400 FUNCTION: ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import. {ECO:0000255|HAMAP-Rule:MF_03121}. ENOG411DVG8 Q3E875,A0A1P8BGE3,F4K3I7 RGAPX_ARATH,A0A1P8BGE3_ARATH,F4K3I7_ARATH Uncharacterized Rho GTPase-activating protein At5g61530,Small G protein family protein / RhoGAP family protein 41923,31525,42068 Uncharacterized Rho GTPase-activating protein At5g61530,Small G protein family protein / RhoGAP family protein cytoplasm [GO:0005737]; GTPase activator activity [GO:0005096]; regulation of GTPase activity [GO:0043087]; signal transduction [GO:0007165],signal transduction [GO:0007165] locus:2151611; AT5G61530 RhoGAP domain Auxin-regulated protein-like (Os07g0486500 protein) (cDNA clone:001-124-F03, full insert sequence) (cDNA clone:J013130L24, full insert sequence) Q84ZE8 Q84ZE8_ORYSJ P0683C09.118 Os07g0486500 OsJ_24279 OSNPB_070486500 ENOG411DVG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plays role in broad-spectrum disease resistance. Probably has no oxalate oxidase activity even if the active site is conserved Germin-like protein 8-4 (Germin-like protein 1) (OsGER1),Germin-like protein 8-12,Germin-like protein 8-3 (Germin-like protein 2) (OsGER2) Q6YZZ6,Q6ZCR3,Q6YZZ7 GL84_ORYSJ,GL812_ORYSJ,GL83_ORYSJ GER1 Os08g0189300 LOC_Os08g08980 B1099H05.28 OsJ_025243 P0610E02.4,Os08g0231400 LOC_Os08g13440 OsJ_025435 P0461A06.15,GER2 Os08g0189200 LOC_Os08g08970 B1099H05.26 OsJ_025237 P0610E02.2 FUNCTION: Plays role in broad-spectrum disease resistance. Probably has no oxalate oxidase activity even if the active site is conserved. {ECO:0000269|PubMed:19011003}. MISCELLANEOUS: Member of the 12 germin-like protein gene cluster located on chromosome 8 in the major-effect quantitative trait loci (QTL) for fungal blast resistance. Partial suppression of the 12 germin-like protein genes increases susceptibility to the fungal pathogens causing rice blast and sheath blight diseases. ENOG411DVG6 RABA3 Q9LNK1 RABA3_ARATH Ras-related protein RABA3 (AtRABA3) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. 26250 Ras-related protein RABA3 (AtRABA3) cell plate [GO:0009504]; endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in root tips. {ECO:0000269|PubMed:18239134}. locus:2035302; AT1G01200 ras-related protein Os09g0527600 protein (Putative GTP-binding protein) (cDNA clone:J013043E12, full insert sequence),Os06g0714600 protein (Putative PRA2) Q652A2,Q5Z9Q7 Q652A2_ORYSJ,Q5Z9Q7_ORYSJ Os09g0527600 Os09g0527600 OJ1439_F07.26 OSNPB_090527600,Os06g0714600 Os06g0714600 OsJ_22652 OSNPB_060714600 P0481E08.5 ENOG411DVG5 MSF3.23 Q5PNU0,F4IRH2 Q5PNU0_ARATH,F4IRH2_ARATH At2g18850 (SET domain-containing protein),SET domain-containing protein 61723,60918 At2g18850 (SET domain-containing protein),SET domain-containing protein protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026] locus:2044465; AT2G18850 NA Os08g0244400 protein (Fragment) A0A0P0XDC9 A0A0P0XDC9_ORYSJ Os08g0244400 OSNPB_080244400 ENOG411DVG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q6K755 Q6K755_ORYSJ Os02g0490500 Os02g0490500 OsJ_06788 OSJNBa0048K16.23 OSNPB_020490500 ENOG411DVG3 ATHB-15,ATHB-8 Q9ZU11,Q39123,F4IBA6,B3H4G8 ATB15_ARATH,ATHB8_ARATH,F4IBA6_ARATH,B3H4G8_ARATH Homeobox-leucine zipper protein ATHB-15 (HD-ZIP protein ATHB-15) (Homeodomain transcription factor ATHB-15) (Protein CORONA) (Protein INCURVATA 4),Homeobox-leucine zipper protein ATHB-8 (HD-ZIP protein ATHB-8) (Homeodomain transcription factor ATHB-8),Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Early shoot meristem is large; Slightly abnormal vascular development; No other phenotypes detected-S. Clark-2005 FUNCTION: Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.,FUNCTION: Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. 91701,91996,87079,91829 Homeobox-leucine zipper protein ATHB-15 (HD-ZIP protein ATHB-15) (Homeodomain transcription factor ATHB-15) (Protein CORONA) (Protein INCURVATA 4),Homeobox-leucine zipper protein ATHB-8 (HD-ZIP protein ATHB-8) (Homeodomain transcription factor ATHB-8),Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; cell differentiation [GO:0030154]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; meristem initiation [GO:0010014]; positive regulation of cell differentiation [GO:0045597]; positive regulation of cell proliferation [GO:0008284]; primary shoot apical meristem specification [GO:0010072]; procambium histogenesis [GO:0010067]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351]; xylem development [GO:0010089],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; determination of bilateral symmetry [GO:0009855]; determination of dorsal identity [GO:0048263]; integument development [GO:0080060]; leaf morphogenesis [GO:0009965]; meristem initiation [GO:0010014]; meristem maintenance [GO:0010073]; phloem or xylem histogenesis [GO:0010087]; plant organ morphogenesis [GO:1905392]; regulation of meristem growth [GO:0010075] DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}. locus:2134088;,locus:2034086; AT1G52150,AT4G32880 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX29 (HD-ZIP protein HOX29) (Homeodomain transcription factor HOX29) (OSHB5) (OsHox29),Homeobox-leucine zipper protein HOX32 (HD-ZIP protein HOX32) (Homeodomain transcription factor HOX32) (OsHox32),Homeobox-leucine zipper protein HOX33 (HD-ZIP protein HOX33) (Homeodomain transcription factor HOX33) (OsHox33),Os06g0720500 protein (Os06g0722300 protein) (Os06g0722650 protein),Os06g0720500 protein (Os06g0722300 protein) (Os06g0722650 protein) (Fragment),Os03g0640800 protein (Fragment),Os01g0200300 protein (Fragment),Os12g0612700 protein (Fragment) Q5QMZ9,Q6AST1,Q2QM96,C7J481,A0A0P0X196,A0A0P0W0I4,A0A0P0W0J1,A0A0P0UZH0,A0A0P0YCE7 HOX29_ORYSJ,HOX32_ORYSJ,HOX33_ORYSJ,C7J481_ORYSJ,A0A0P0X196_ORYSJ,A0A0P0W0I4_ORYSJ,A0A0P0W0J1_ORYSJ,A0A0P0UZH0_ORYSJ,A0A0P0YCE7_ORYSJ HOX29 Os01g0200300 LOC_Os01g10320 B1015E06.7,HOX32 Os03g0640800 LOC_Os03g43930 B1394A07.10,HOX33 Os12g0612700 LOC_Os12g41860 OsJ_36852,Os06g0722650 Os06g0722300 Os06g0720500 OSNPB_060720500 OSNPB_060722300 OSNPB_060722650,Os06g0722650 Os06g0720500 Os06g0722300 OSNPB_060720500 OSNPB_060722300 OSNPB_060722650,Os03g0640800 OSNPB_030640800,Os01g0200300 OSNPB_010200300,Os12g0612700 OSNPB_120612700 FUNCTION: Probable transcription factor that may be necessary for the proper patterning of vascular bundles. {ECO:0000269|PubMed:18567825}.,FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DVG2 APX6 Q8GY91 APX6_ARATH Putative L-ascorbate peroxidase 6 (AtAPx08) (EC 1.11.1.11) FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}. ARA:AT4G32320-MONOMER; 1.11.1.11 36240 Putative L-ascorbate peroxidase 6 (AtAPx08) (EC 1.11.1.11) cytosol [GO:0005829]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to reactive oxygen species [GO:0000302]; seed germination [GO:0009845]; seed maturation [GO:0010431] locus:2127766; AT4G32320 L-ascorbate peroxidase Os08g0522400 protein (Fragment) A0A0P0XHX9 A0A0P0XHX9_ORYSJ Os08g0522400 OSNPB_080522400 ENOG411DVG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os06g0210400 protein (Putative lectin-like receptor kinase),Os10g0533800 protein Q69TX5,A0A0N7KS46 Q69TX5_ORYSJ,A0A0N7KS46_ORYSJ Os06g0210400 Os06g0210400 OSNPB_060210400 P0021C04.10,Os10g0533800 OSNPB_100533800 ENOG411DVG0 UBP3,UBP4 O24454,Q8LAM0,A0A1P8AYX2,F4IJH1 UBP3_ARATH,UBP4_ARATH,A0A1P8AYX2_ARATH,F4IJH1_ARATH Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.4.19.12) (Deubiquitinating enzyme 3) (AtUBP3) (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3),Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.4.19.12) (Deubiquitinating enzyme 4) (AtUBP4) (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4),Ubiquitin-specific protease 4 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Required for the correct development of pollen. {ECO:0000269|PubMed:10898935, ECO:0000269|PubMed:17905865}. ARA:AT4G39910-MONOMER;,ARA:AT2G22310-MONOMER; R-ATH-5689880; 3.4.19.12 42447,41846,38385,37863 Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.4.19.12) (Deubiquitinating enzyme 3) (AtUBP3) (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3),Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.4.19.12) (Deubiquitinating enzyme 4) (AtUBP4) (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4),Ubiquitin-specific protease 4 nucleus [GO:0005634]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Constitutively and ubiquitously expressed. {ECO:0000269|PubMed:9268021}. locus:2140074;,locus:2060395; AT4G39910,AT2G22310 ubiquitin carboxyl-terminal hydrolase Os03g0190800 protein (Putative ubiquitin-specific protease 3) (Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed) (cDNA clone:J023004H19, full insert sequence),Os04g0452400 protein (cDNA clone:J013134H10, full insert sequence) Q8H7M6,Q0JCS2 Q8H7M6_ORYSJ,Q0JCS2_ORYSJ OJ1217B09.20 LOC_Os03g09080 Os03g0190800 OsJ_09723 OSNPB_030190800,Os04g0452400 Os04g0452400 OSNPB_040452400 ENOG411DSX3 DIT1,DiT1 Q9LXV3,B3H4S6 DIT1_ARATH,B3H4S6_ARATH Dicarboxylate transporter 1, chloroplastic (2-oxoglutarate/malate translocator 1) (AtpOMT1),Dicarboxylate transporter 1 DISRUPTION PHENOTYPE: Reduced growth and amino acid levels, but growth inhibition is prevented when mutant plants are grown under non-photorespiratory high CO(2) conditions. {ECO:0000269|PubMed:12154133, ECO:0000269|PubMed:21175886}. Slow growth-M. Taniguchi-2011 FUNCTION: 2-oxoglutarate/malate translocator involved with DIT2-1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Imports 2-oxoglutarate into plastids as precursor for ammonia assimilation. 2-oxoglutarate is converted to glutamate, the end product of ammonia assimilation, which is exported to the cytosol by DIT2-1. {ECO:0000269|PubMed:12154133, ECO:0000269|PubMed:21175886}. 59213,59027 Dicarboxylate transporter 1, chloroplastic (2-oxoglutarate/malate translocator 1) (AtpOMT1),Dicarboxylate transporter 1 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; alpha-ketoglutarate transmembrane transporter activity [GO:0015139]; malate transmembrane transporter activity [GO:0015140]; oxaloacetate transmembrane transporter activity [GO:0015131]; alpha-ketoglutarate transport [GO:0015742]; ammonia assimilation cycle [GO:0019676]; malate transmembrane transport [GO:0071423]; oxaloacetate transport [GO:0015729]; response to nematode [GO:0009624]; sodium ion transport [GO:0006814],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; sodium ion transport [GO:0006814]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:12154133, ECO:0000269|PubMed:12887583}. locus:2182270; AT5G12860 2-oxoglutarate malate translocator 2-oxoglutarate/malate translocator, chloroplast, putative, expressed (Os12g0515400 protein),Os12g0515400 protein (Fragment) Q2QPW3,A0A0P0YAM0 Q2QPW3_ORYSJ,A0A0P0YAM0_ORYSJ Os12g0515400 LOC_Os12g33080 Os12g0515400 OSNPB_120515400,Os12g0515400 OSNPB_120515400 ENOG411EMMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD Os01g0218900 protein,Os01g0655250 protein Q5NAU3,A0A0P0V603 Q5NAU3_ORYSJ,A0A0P0V603_ORYSJ Os01g0218900 OsJ_00898 OSNPB_010218900 P0489G09.15,Os01g0655250 OSNPB_010655250 ENOG411EDHV Q8RX32 TRNH2_ARATH Tropinone reductase homolog At1g07450 (EC 1.1.1.-) ARA:AT1G07450-MONOMER; 1.1.1.- 27896 Tropinone reductase homolog At1g07450 (EC 1.1.1.-) oxidoreductase activity [GO:0016491] locus:2025057; AT1G07450 KR domain NA NA NA NA NA NA NA ENOG411EMMW P0CJ66 Y1705_ARATH Uncharacterized protein At1g27050 22454 Uncharacterized protein At1g27050 RNA binding [GO:0003723]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2205779; AT1G27050 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMMV GLX2-4,GLX2-5 Q8LDW8,Q9SID3,A0A1P8AZ54 GLO2D_ARATH,GLO2N_ARATH,A0A1P8AZ54_ARATH Probable hydroxyacylglutathione hydrolase 2, chloroplastic (EC 3.1.2.6) (Glyoxalase 2-4) (Glyoxalase II) (Glx II),Hydroxyacylglutathione hydrolase 2, mitochondrial (EC 3.1.2.6) (Glyoxalase II) (Glx II),Glyoxalase 2-5 FUNCTION: Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid. {ECO:0000250}.,FUNCTION: Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid. {ECO:0000269|PubMed:16227621}. PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 2/2. ARA:AT1G06130-MONOMER; 3.1.2.6; 3.1.2.6 36625,35841,27627 Probable hydroxyacylglutathione hydrolase 2, chloroplastic (EC 3.1.2.6) (Glyoxalase 2-4) (Glyoxalase II) (Glx II),Hydroxyacylglutathione hydrolase 2, mitochondrial (EC 3.1.2.6) (Glyoxalase II) (Glx II),Glyoxalase 2-5 chloroplast [GO:0009507]; hydroxyacylglutathione hydrolase activity [GO:0004416]; metal ion binding [GO:0046872]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243],mitochondrion [GO:0005739]; hydroxyacylglutathione hydrolase activity [GO:0004416]; iron ion binding [GO:0005506]; zinc ion binding [GO:0008270]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243],hydroxyacylglutathione hydrolase activity [GO:0004416]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243] locus:2198851;,locus:2061270; AT1G06130,AT2G31350 Hydroxyacylglutathione hydrolase Glyoxalase II (Os09g0516600 protein) (cDNA clone:J023063J20, full insert sequence) (cDNA clone:J033132K06, full insert sequence) Q69MU0 Q69MU0_ORYSJ Os09g0516600 Os09g0516600 OSJNBb0034B12.14 OSNPB_090516600 ENOG411EMMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Expressed protein (Os03g0115400 protein) (cDNA clone:J033126K20, full insert sequence) Q10SP2 Q10SP2_ORYSJ LOC_Os03g02440 Os03g0115400 OSNPB_030115400 ENOG411EMMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMMZ CAC2 O04983,F4JYE1,F4JYE0 ACCC_ARATH,F4JYE1_ARATH,F4JYE0_ARATH Biotin carboxylase, chloroplastic (EC 6.3.4.14) (Acetyl-CoA carboxylase subunit A) (ACC) (EC 6.4.1.2),Acetyl Co-enzyme a carboxylase biotin carboxylase subunit FUNCTION: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. {ECO:0000269|PubMed:9414551}. PATHWAY: Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1. ARA:AT5G35360-MONOMER; R-ATH-196780;R-ATH-70263; 6.3.4.14; 6.4.1.2 58387,54164,60771 Biotin carboxylase, chloroplastic (EC 6.3.4.14) (Acetyl-CoA carboxylase subunit A) (ACC) (EC 6.4.1.2),Acetyl Co-enzyme a carboxylase biotin carboxylase subunit chloroplast [GO:0009507]; acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; metal ion binding [GO:0046872]; fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295],ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; metal ion binding [GO:0046872],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; metal ion binding [GO:0046872]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Accumulates in fatty acids synthesizing tissues. Mostly expressed in siliques, developing leaves, and flowers, present in roots and embryos (especially at torpedo stage), and, to a lower extent, in mature leaves. {ECO:0000269|PubMed:10759501, ECO:0000269|PubMed:9349276, ECO:0000269|PubMed:9414551}. locus:2182658; AT5G35360 Biotin carboxylase NA NA NA NA NA NA NA ENOG411EMM8 A0A1P8AXN6 A0A1P8AXN6_ARATH Zinc finger C-x8-C-x5-C-x3-H type family protein 36644 Zinc finger C-x8-C-x5-C-x3-H type family protein metal ion binding [GO:0046872] zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411DSXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0122500 protein (Fragment) A0A0P0WHB3 A0A0P0WHB3_ORYSJ Os05g0122500 OSNPB_050122500 ENOG411E7E4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0371600 protein) Q84TR9 Q84TR9_ORYSJ OSJNBb0097F01.17 LOC_Os03g25530 Os03g0371600 OSNPB_030371600 ENOG411EBZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411EHM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHWB Q9FGF1 Q9FGF1_ARATH Emb|CAB71880.1 (NYN domain protein) 19982 Emb|CAB71880.1 (NYN domain protein) peroxisome [GO:0005777]; regulation of gene expression [GO:0010468] locus:2179376; AT5G64450 Pfam:DUF88 NA NA NA NA NA NA NA ENOG411DXZB URED Q7Y0S0,F4IIY7 URED_ARATH,F4IIY7_ARATH Urease accessory protein D (AtURED),Urease accessory protein D DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants cannot grow on medium with urea as the sole source of nitrogen. {ECO:0000269|PubMed:16244137}. No visible phenotype. Unable to sustain growth on urea as sole nitrogen source. No urease activity detected. Unable to use urea as primary nitrogen source-T. Romeis-2005 FUNCTION: Required for the maturation and activation of urease via the functional incorporation of the urease nickel metallocenter. {ECO:0000269|PubMed:16244137}. 32613,29688 Urease accessory protein D (AtURED),Urease accessory protein D nickel cation binding [GO:0016151]; nitrogen compound metabolic process [GO:0006807]; positive regulation of urease activity [GO:1905182],nickel cation binding [GO:0016151]; nitrogen compound metabolic process [GO:0006807] locus:504956057; AT2G35035 Urease accessory protein Urease accessory protein D (AtURED),Os02g0173000 protein (cDNA clone:001-132-D10, full insert sequence) Q0E3I9,B7F4T8 URED_ORYSJ,B7F4T8_ORYSJ URED Os02g0173000 LOC_Os02g07670 OSJNBa0073A21,Os02g0173000 OSNPB_020173000 FUNCTION: Required for the maturation and activation of urease via the functional incorporation of the urease nickel metallocenter. {ECO:0000250}. ENOG411DXZC TCHQD O80662 TCHQD_ARATH Glutathione S-transferase TCHQD (EC 2.5.1.18) (Protein tetrachlorohydroquinone dehalogenase-homolog) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. {ECO:0000250}. 2.5.1.18 31506 Glutathione S-transferase TCHQD (EC 2.5.1.18) (Protein tetrachlorohydroquinone dehalogenase-homolog) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to toxic substance [GO:0009636] locus:2195990; AT1G77290 tetrachloro-p-hydroquinone reductive OSJNBb0086G13.14 protein (Os04g0435500 protein) (cDNA clone:006-203-C06, full insert sequence) (cDNA clone:006-308-H10, full insert sequence) (cDNA clone:J023112M18, full insert sequence) Q7XUT1 Q7XUT1_ORYSJ Os04g0435500 Os04g0435500 OsJ_14885 OSJNBb0086G13.14 OSNPB_040435500 ENOG411DXZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DXZF MDH9.17 Q5XF81 Q5XF81_ARATH At5g42470 (BRCA1-A complex subunit BRE-like protein) 44118 At5g42470 (BRCA1-A complex subunit BRE-like protein) BRCA1-A complex [GO:0070531]; BRISC complex [GO:0070552] locus:2162331; AT5G42470 BRCA1-A complex subunit Os06g0715600 protein (Putative brain and reproductive organ-expressed protein) (cDNA clone:001-025-F11, full insert sequence) (cDNA clone:J033105L03, full insert sequence) Q5Z9P5 Q5Z9P5_ORYSJ Os06g0715600 Os06g0715600 OsJ_22662 OSNPB_060715600 P0481E08.16 ENOG411DXZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rpp20 subunit of nuclear RNase MRP and P Expressed protein (Os11g0168300 protein) (cDNA clone:006-203-D04, full insert sequence) (cDNA clone:J013068F13, full insert sequence),Os11g0168300 protein (Fragment) Q2RA28,A0A0P0XZ70 Q2RA28_ORYSJ,A0A0P0XZ70_ORYSJ LOC_Os11g06760 Os11g0168300 OsJ_33103 OSNPB_110168300,Os11g0168300 OSNPB_110168300 ENOG411DXZD NAPRT2,NAPRT1 Q84WV8,Q8RWM2,A0A1P8AXW4 NPRT2_ARATH,NPRT1_ARATH,A0A1P8AXW4_ARATH Nicotinate phosphoribosyltransferase 2 (EC 6.3.4.21),Nicotinate phosphoribosyltransferase 1 (NAPRTase) (EC 6.3.4.21),Nicotinate phosphoribosyltransferase 2 FUNCTION: Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN). {ECO:0000305|PubMed:18978034}.; FUNCTION: Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP. {ECO:0000250}. PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from nicotinate: step 1/1. {ECO:0000250|UniProtKB:Q9VQX4}.,PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from nicotinate: step 1/1. {ECO:0000250|UniProtKB:Q6XQN6}. ARA:AT2G23420-MONOMER;,ARA:AT4G36940-MONOMER; R-ATH-197264;R-ATH-6798695; 6.3.4.21 62273,62421,60983 Nicotinate phosphoribosyltransferase 2 (EC 6.3.4.21),Nicotinate phosphoribosyltransferase 1 (NAPRTase) (EC 6.3.4.21),Nicotinate phosphoribosyltransferase 2 ligase activity [GO:0016874]; nicotinate phosphoribosyltransferase activity [GO:0004516]; nicotinate-nucleotide diphosphorylase (carboxylating) activity [GO:0004514]; NAD biosynthetic process [GO:0009435]; nicotinate nucleotide salvage [GO:0019358],nicotinate phosphoribosyltransferase activity [GO:0004516]; nicotinate-nucleotide diphosphorylase (carboxylating) activity [GO:0004514]; NAD biosynthetic process [GO:0009435]; nicotinate nucleotide salvage [GO:0019358] locus:2046872;,locus:2115095; AT2G23420,AT4G36940 nicotinate Nicotinate phosphoribosyltransferase, putative, expressed (Os03g0837300 protein) (Putative nicotinate phosphoribosyltransferase) (cDNA clone:J023077G12, full insert sequence),Os03g0837300 protein Q851M0,A0A0P0W5D5 Q851M0_ORYSJ,A0A0P0W5D5_ORYSJ OSJNBa0042I09.24 LOC_Os03g62110 Os03g0837300 OsJ_13282 OSNPB_030837300,Os03g0837300 OSNPB_030837300 ENOG411DXZE XGD1 Q94AA9,Q3E9A4,Q3EAR7,A0A1P8BAD3,A8MQY3,A0A1I9LNV8,A0A1I9LNV7 XGD1_ARATH,GLYT5_ARATH,GLYT2_ARATH,A0A1P8BAD3_ARATH,A8MQY3_ARATH,A0A1I9LNV8_ARATH,A0A1I9LNV7_ARATH Xylogalacturonan beta-1,3-xylosyltransferase (EC 2.4.2.41) (Protein XYLOGALACTURONAN DEFICIENT 1),Probable glycosyltransferase At5g20260 (EC 2.4.-.-),Probable glycosyltransferase At3g42180 (EC 2.4.-.-),Exostosin family protein DISRUPTION PHENOTYPE: Decreased cell wall xylose. {ECO:0000269|PubMed:18460606}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18460606}. Reduced XGA content is responsible for reduced xylose.,WT phenotype in terms of visible characteristics. Approx 25% reduction in cell wall xylose content as compared to WT. Xylose is primarily lost from pectin polymers. Decreased cell wall branched GalA residues 34-GalA. Low xylose levels in cell walls-H. Scheller-2008 FUNCTION: Involved in pectin biosynthesis. Catalyzes the transfer of xylose from UDP-xylose onto oligogalacturonides and endogenous acceptors. {ECO:0000269|PubMed:18460606}.,FUNCTION: May be involved in cell wall biosynthesis. MetaCyc:AT5G33290-MONOMER;,ARA:AT5G20260-MONOMER;,ARA:AT3G42180-MONOMER; 2.4.2.41; 2.4.2.41,2.4.-.- 56600,53222,54268,42003,17910,39650,14793 Xylogalacturonan beta-1,3-xylosyltransferase (EC 2.4.2.41) (Protein XYLOGALACTURONAN DEFICIENT 1),Probable glycosyltransferase At5g20260 (EC 2.4.-.-),Probable glycosyltransferase At3g42180 (EC 2.4.-.-),Exostosin family protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; UDP-xylosyltransferase activity [GO:0035252]; xylogalacturonan beta-1,3-xylosyltransferase activity [GO:0102983]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489]; xylogalacturonan metabolic process [GO:0010398],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Highly expressed in adult leaves. Lower levels in young leaves, stems and roots. {ECO:0000269|PubMed:18460606}. locus:2145924;,locus:2100814; AT5G33290,AT5G20260,AT3G42180 Glycosyltransferase Os06g0680900 protein,Os02g0613100 protein Q0DA35,A0A0P0VLM1 Q0DA35_ORYSJ,A0A0P0VLM1_ORYSJ Os06g0680900 Os06g0680900 OSNPB_060680900,Os02g0613100 OSNPB_020613100 ENOG411DXZJ MUB3.19 Q9FLF3 Q9FLF3_ARATH Ribosomal protein L18e/L15 superfamily protein (Uncharacterized protein At5g64670) 31200 Ribosomal protein L18e/L15 superfamily protein (Uncharacterized protein At5g64670) mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2174824; AT5G64670 ribosomal protein Os08g0310100 protein (Putative LSU ribosomal protein L15P) (Putative ribosomal protein L15) (cDNA clone:J033052F06, full insert sequence) Q6UUH5 Q6UUH5_ORYSJ B1100F03.118 Os08g0310100 OsJ_26453 OSJNBa0003M24.17 OSNPB_080310100 ENOG411DXZK O65238 Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (EC 2.7.11.1) 2.7.11.1 96046 G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468] locus:2182603; AT5G35370 G-type lectin S-receptor-like serine threonine-protein kinase Os02g0767400 protein (Putative S-receptor kinase),Os09g0454900 protein (Putative S-receptor kinase, homolog),Os09g0278501 protein Q6Z305,Q67U98,A0A0P0XKZ8 Q6Z305_ORYSJ,Q67U98_ORYSJ,A0A0P0XKZ8_ORYSJ Os02g0767400 Os02g0767400 OJ1004_A11.28 OSNPB_020767400,Os09g0454900 Os09g0454900 OSNPB_090454900 P0025H07.11,Os09g0278501 OSNPB_090278501 ENOG411DXZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411DXZN B9DF92 B9DF92_ARATH AT5G19900 protein (PRLI-interacting factor) 55518 AT5G19900 protein (PRLI-interacting factor) locus:2147660; AT5G19900 PRLI-interacting factor Os02g0832600 protein (PRLI-interacting factor A-like) (cDNA clone:J023010P10, full insert sequence) (cDNA clone:J023010P11, full insert sequence) Q6K962 Q6K962_ORYSJ Os02g0832600 Os02g0832600 OJ1149_C12.25 OJ1282_E10.1 OsJ_09006 OSNPB_020832600 ENOG411DXZM Q9ZUX5,A0A1P8B323 Q9ZUX5_ARATH,A0A1P8B323_ARATH At2g27740 (RAB6-interacting golgin (DUF662)) (Uncharacterized protein At2g27740),RAB6-interacting golgin (DUF662) 20238,14311 At2g27740 (RAB6-interacting golgin (DUF662)) (Uncharacterized protein At2g27740),RAB6-interacting golgin (DUF662) locus:2041985; AT2G27740 Pfam:DUF662 Os04g0408600 protein (cDNA clone:J023139O07, full insert sequence) Q84VA6 Q84VA6_ORYSJ Os04g0408600 OsJ_14703 OSNPB_040408600 ENOG411DXZR Q08AA5,A0A1P8AQC9 Q08AA5_ARATH,A0A1P8AQC9_ARATH At1g67410 (Exostosin family protein) (Glycosyltransferase),Exostosin family protein 49756,35648 At1g67410 (Exostosin family protein) (Glycosyltransferase),Exostosin family protein transferase activity [GO:0016740] locus:2197639; AT1G67410 exostosin family Exostosin-like (OJ1485_B09.5 protein) (Os01g0921300 protein) (cDNA clone:001-206-B06, full insert sequence) (cDNA clone:002-117-G05, full insert sequence) Q8RZJ1 Q8RZJ1_ORYSJ OJ1485_B09.5 Os01g0921300 B1793G04.18 OsJ_04578 OSNPB_010921300 ENOG411DXZS O82785 O82785_ARATH Transcriptional regulator of RNA polII, SAGA, subunit (Uncharacterized protein At2g14850) 32693 Transcriptional regulator of RNA polII, SAGA, subunit (Uncharacterized protein At2g14850) SAGA complex [GO:0000124]; transcription coactivator activity [GO:0003713]; histone H3 acetylation [GO:0043966]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2046956; AT2G14850 NA Os12g0580500 protein (Fragment) A0A0P0YBN8 A0A0P0YBN8_ORYSJ Os12g0580500 OSNPB_120580500 ENOG411DXZQ Q147P9,Q944R2 Q147P9_ARATH,Q944R2_ARATH At5g10050 (NAD(P)-binding Rossmann-fold superfamily protein),AT5g10050/T31P16_40 (NAD(P)-binding Rossmann-fold superfamily protein) ARA:AT5G10050-MONOMER;,ARA:AT5G65205-MONOMER; R-ATH-193144; 30659,30917 At5g10050 (NAD(P)-binding Rossmann-fold superfamily protein),AT5g10050/T31P16_40 (NAD(P)-binding Rossmann-fold superfamily protein) oxidoreductase activity [GO:0016491] locus:2184098;,locus:505006716; AT5G10050,AT5G65205 dehydrogenase reductase Os04g0457200 protein (Fragment) A0A0P0WB25 A0A0P0WB25_ORYSJ Os04g0457200 OSNPB_040457200 ENOG411DXZV PCMP-H25,PCMP-H75,PCMP-H67,PCMP-H63 Q8S8Q7,Q680H3,Q9C6G2,Q9SUU7 PP183_ARATH,PP170_ARATH,PPR63_ARATH,PP346_ARATH Pentatricopeptide repeat-containing protein At2g34370, mitochondrial,Pentatricopeptide repeat-containing protein At2g25580,Pentatricopeptide repeat-containing protein At1g29710, mitochondrial,Pentatricopeptide repeat-containing protein At4g32450, mitochondrial 53856,69906,53813,60537 Pentatricopeptide repeat-containing protein At2g34370, mitochondrial,Pentatricopeptide repeat-containing protein At2g25580,Pentatricopeptide repeat-containing protein At1g29710, mitochondrial,Pentatricopeptide repeat-containing protein At4g32450, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2040859;,locus:2040135;,locus:2013738;,locus:2127826; AT2G34370,AT2G25580,AT1G29710,AT4G32450 Pentatricopeptide repeat-containing protein Os01g0737900 protein (Selenium-binding protein-like) (cDNA clone:J023130A18, full insert sequence) Q8S2J3 Q8S2J3_ORYSJ Os01g0737900 OsJ_03384 OSJNBb0021A09.21 OSNPB_010737900 ENOG411DXZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant calmodulin-binding domain Expressed protein (Os12g0506500 protein) (cDNA clone:002-173-A09, full insert sequence) Q2QQ54 Q2QQ54_ORYSJ Os12g0506500 LOC_Os12g32190 Os12g0506500 OSNPB_120506500 ENOG411DXZU SERGT1 Q8VYF9 SRGT1_ARATH Peptidyl serine alpha-galactosyltransferase (AtSGT1) (EC 2.4.1.-) DISRUPTION PHENOTYPE: Reduced root hair length (PubMed:25944827). Longer roots and larger leaves (PubMed:24914209). {ECO:0000269|PubMed:24914209, ECO:0000269|PubMed:25944827}. FUNCTION: Glycosyltransferase involved in the O-galactosylation of several proteins including extensins. Catalyzes the transfer of alpha-galactosyl to Ser residues. Hydroxylation of proline residues adjacent to the serine acceptor is required for activity. {ECO:0000269|PubMed:24914209}. 2.4.1.- 91449 Peptidyl serine alpha-galactosyltransferase (AtSGT1) (EC 2.4.1.-) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2082314; AT3G01720 NA Os01g0904500 protein Q5N6W0 Q5N6W0_ORYSJ Os01g0904500 Os01g0904500 OsJ_04456 OSJNOa013M08.1 OSNPB_010904500 ENOG411DXZZ Q8LPS4,A0A1P8BEH4,F4JC31,F4K4U5 Q8LPS4_ARATH,A0A1P8BEH4_ARATH,F4JC31_ARATH,F4K4U5_ARATH At3g06670/T8E24.10 (Binding protein),Serine/threonine-protein phosphatase 4 regulatory subunit-like protein,Binding protein 97290,40761,99778,92285 At3g06670/T8E24.10 (Binding protein),Serine/threonine-protein phosphatase 4 regulatory subunit-like protein,Binding protein locus:2083378;,locus:2158024; AT3G06670,AT5G49390 serine threonine-protein phosphatase 4 regulatory subunit 3-like Os01g0337600 protein (Fragment),Os05g0156800 protein A0A0P0V256,A0A0P0V298,A0A0P0WI63 A0A0P0V256_ORYSJ,A0A0P0V298_ORYSJ,A0A0P0WI63_ORYSJ Os01g0337600 OSNPB_010337600,Os05g0156800 OSNPB_050156800 ENOG411DXZ2 Q93ZW3,F4JUV3,Q9SVG6,A0A1P8B8Y2 Q93ZW3_ARATH,F4JUV3_ARATH,Q9SVG6_ARATH,A0A1P8B8Y2_ARATH TFIIE-alpha 1 (Transcription factor TFIIE, alpha subunit) (Uncharacterized protein At1g03280),Transcription factor TFIIE, alpha subunit,Transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein (Uncharacterized protein AT4g20810) (Uncharacterized protein F21C20.160) 54124,54576,47805,48304 TFIIE-alpha 1 (Transcription factor TFIIE, alpha subunit) (Uncharacterized protein At1g03280),Transcription factor TFIIE, alpha subunit,Transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein (Uncharacterized protein AT4g20810) (Uncharacterized protein F21C20.160) sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; transcription initiation from RNA polymerase II promoter [GO:0006367],sequence-specific DNA binding [GO:0043565]; translation initiation factor activity [GO:0003743]; regulation of transcription, DNA-templated [GO:0006355]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2014515;,locus:2128590;,locus:2121524; AT1G03280,AT4G20340,AT4G20810 general transcription factor IIE subunit 1-like Os08g0343300 protein (cDNA clone:J013118K08, full insert sequence),Os12g0140266 protein,Os11g0137500 protein (Transcription initiation factor IIE, alpha subunit, putative, expressed) (cDNA clone:J023044M12, full insert sequence),Os12g0134300 protein (Fragment),Os11g0137400 protein Q6ZB67,B9G815,Q2RAU2,A0A0P0Y799,A0A0P0XZ21 Q6ZB67_ORYSJ,B9G815_ORYSJ,Q2RAU2_ORYSJ,A0A0P0Y799_ORYSJ,A0A0P0XZ21_ORYSJ Os08g0343300 OJ1119_B10.8 OsJ_26976 OSNPB_080343300,Os12g0140266 OsJ_31089 OSNPB_120140266,Os11g0137500 LOC_Os11g04240 Os11g0137500 OSNPB_110137500,Os12g0134300 OSNPB_120134300,Os11g0137400 OSNPB_110137400 ENOG411DXZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF707) Os06g0727700 protein (Storage protein-like),Os06g0727650 protein,Os06g0727600 protein,Os06g0727800 protein Q5Z7N8,A0A0P0X1I8,A0A0P0X1B1,A0A0P0X165 Q5Z7N8_ORYSJ,A0A0P0X1I8_ORYSJ,A0A0P0X1B1_ORYSJ,A0A0P0X165_ORYSJ Os06g0727700 OSNPB_060727700 P0017G10.22,Os06g0727650 OSNPB_060727650,Os06g0727600 OSNPB_060727600,Os06g0727800 OSNPB_060727800 ENOG411DXZ0 HDA2 Q944K3 HDA2_ARATH Histone deacetylase 2 (EC 3.5.1.98) FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250}. 3.5.1.98 43804 Histone deacetylase 2 (EC 3.5.1.98) nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2180657; AT5G26040 Histone deacetylase Os06g0571100 protein (Putative HDA2) (cDNA clone:J023121P03, full insert sequence) Q5Z608 Q5Z608_ORYSJ Os06g0571100 Os06g0571100 OSNPB_060571100 P0610D01.8 ENOG411DXZ1 XRCC3 Q9FKM5 XRCC3_ARATH DNA repair protein XRCC3 homolog (X-ray repair cross-complementing protein 3 homolog) (AtXRCC3) FUNCTION: Plays essential roles in DNA damage repair in both somatic and meiotic cells. It is important for postsynaptic events following pachytene in meiosis. It is also required for DNA cross-links repair and is involved in double strand breaks (DSBs) repair. {ECO:0000269|PubMed:14726957}. R-ATH-5693579; 33732 DNA repair protein XRCC3 homolog (X-ray repair cross-complementing protein 3 homolog) (AtXRCC3) Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; double-strand break repair [GO:0006302]; double-strand break repair via synthesis-dependent strand annealing [GO:0045003]; meiotic DNA recombinase assembly [GO:0000707]; mitotic recombination [GO:0006312]; reciprocal meiotic recombination [GO:0007131]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148] TISSUE SPECIFICITY: Detected in various tissues. More expressed in reproductive tissues than in vegetative tissues, with the highest level in young flower buds. {ECO:0000269|PubMed:12139010}. locus:2174577; AT5G57450 DNA repair protein Os02g0562100 protein (Putative XRCC3) (XRCC3 protein) Q6YU07 Q6YU07_ORYSJ XRCC3 Os02g0562100 OsJ_07156 OSNPB_020562100 P0435E12.39 ENOG411DXZ6 Q9LUJ4 PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial 64010 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2094394; AT3G22670 pentatricopeptide repeat-containing protein At3g22670 Os03g0746400 protein (Fragment) Q0DNM5,A0A0P0W3V7 Q0DNM5_ORYSJ,A0A0P0W3V7_ORYSJ Os03g0746400 OSNPB_030746400 ENOG411DXZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Os10g0101200 protein (Serine carboxypeptidase family protein, expressed) (cDNA clone:001-040-E08, full insert sequence) (cDNA clone:J023149K09, full insert sequence) Q10A76 Q10A76_ORYSJ Os10g0101200 LOC_Os10g01134 Os10g0101200 OSNPB_100101200 ENOG411DXZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ca2+-ATPase N terminal autoinhibitory domain Os08g0517200 protein,Os08g0517200 protein (Fragment) A0A0P0XIY3,A0A0P0XIC3,A0A0P0XIM4 A0A0P0XIY3_ORYSJ,A0A0P0XIC3_ORYSJ,A0A0P0XIM4_ORYSJ Os08g0517200 OSNPB_080517200 ENOG411DXZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os04g0453400 protein Q0JCR6,A0A0P0WAY0 Q0JCR6_ORYSJ,A0A0P0WAY0_ORYSJ Os04g0453400 Os04g0453400 OsJ_15010 OSNPB_040453400,Os04g0453400 OSNPB_040453400 ENOG411DXZ8 Q9SU88 Q9SU88_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g29590) (Uncharacterized protein T16L4.100) 35373 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g29590) (Uncharacterized protein T16L4.100) chloroplast [GO:0009507]; methyltransferase activity [GO:0008168] locus:2134333; AT4G29590 ubiE/COQ5 methyltransferase family Os01g0712600 protein B9EZ42 B9EZ42_ORYSJ Os01g0712600 OsJ_03229 OSNPB_010712600 ENOG411DXZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 43 Probable glucuronosyltransferase Os01g0157700 (EC 2.4.-.-),Glycosyltransferases (EC 2.4.-.-) Q5ZCC5,A0A0P0UYT8 GT11_ORYSJ,A0A0P0UYT8_ORYSJ Os01g0157700 LOC_Os01g06450 P0011G08.41,Os01g0157700 OSNPB_010157700 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}.,FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000256|RuleBase:RU363127}. ENOG411DZ64 BAK1,SERK4,SERK5 Q94F62,Q9SKG5,Q8LPS5,A0A1P8AZF0,F4JIX9 BAK1_ARATH,SERK4_ARATH,SERK5_ARATH,A0A1P8AZF0_ARATH,F4JIX9_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (AtBAK1) (BRI1-associated receptor kinase 1) (EC 2.7.10.1) (EC 2.7.11.1) (Protein ELONGATED) (Somatic embryogenesis receptor kinase 3) (AtSERK3) (Somatic embryogenesis receptor-like kinase 3),Somatic embryogenesis receptor kinase 4 (AtSERK4) (EC 2.7.10.1) (EC 2.7.11.1) (Protein BAK1-like 1) (AtBKK1) (Somatic embryogenesis receptor-like kinase 2),Somatic embryogenesis receptor kinase 5 (AtSERK5) (EC 2.7.11.1) (Somatic embryogenesis receptor-like kinase 5),Somatic embryogenesis receptor-like kinase 5,BRI1-associated receptor kinase DISRUPTION PHENOTYPE: Semi-dwarfed phenotype, altered leaf morphology and reduced sensitivity to brassinolide and flagellin. Enhanced chlorosis and lesion formation upon pathogen infection. Bak1 and bkk1 double mutants are seedling lethal. {ECO:0000269|PubMed:12150929, ECO:0000269|PubMed:17600708, ECO:0000269|PubMed:17625569, ECO:0000269|PubMed:20018402}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with BAK1. Bak1 and bkk1 double mutants are seedling lethal. {ECO:0000269|PubMed:17600708, ECO:0000269|PubMed:18667726}. Same phenotype as bak1-1.,Infection of Col-0 plants with PtoDC3000 resulted in lesions that were restricted to infection sites whereas infection of mutant lines produced leaf chlorosis followed by spreading necrosis 4 days after infection. However bacterial growth in Col-0 and bak1 mutant lines did not differ. Infection of bak1 mutants with strains PtoAvrRpm1 PtohrcC2 or Pph resulted in symptoms and bacterial growth rates that were indistinguishable from those on Col-0.,Mutant exhibited reduced leaf growth (~20%) shorter hypocotyls in the dark and partial BL insensitivity in root-growth assays.,Reactive oxygen intermediate (ROI) production was stronger in A. brassicicola-infected mutant lines and always spread into uninoculated areas. The same response was observed upon infection with PtoDC3000. Moreover ROI microbursts appeared in infected leaves before the appearance of microscopic lesions.,Phenotype not described.,Smaller rosettes than either parental single mutants and severely reduced stature resembling strong bri1 alleles indicating that serk3 mutation has a stronger effect on bri1-6 than serk1-1. Semi-dwarf; Insensitive to brassinosteroids-J. Walker-2002 FUNCTION: Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interactions with FLS2 and EFR, and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway (PubMed:17583510, PubMed:17600708, PubMed:18667726, PubMed:18694562, PubMed:19124768, PubMed:20018402, PubMed:20404519, PubMed:21350342, PubMed:21693696). Phosphorylates BIR2 and thus promotes interaction with BIR2 (PubMed:24388849, PubMed:24556575). This interaction prevents interaction with FLS2 in the absence of pathogen-associated molecular patterns (PAMP) (PubMed:24388849, PubMed:24556575). Component of the RLP23-SOBIR1-BAK1 complex that mediates NLP-triggered immunity (PubMed:27251392). Required for PSK promotion of seedling growth and protoplast expansion (PubMed:26071421). CNGC17 and AHAs form a functional cation-translocating unit that is activated by PSKR1/BAK1 and possibly other BAK1/RLK complexes (PubMed:26071421). {ECO:0000269|PubMed:17583510, ECO:0000269|PubMed:17600708, ECO:0000269|PubMed:18667726, ECO:0000269|PubMed:18694562, ECO:0000269|PubMed:19124768, ECO:0000269|PubMed:20018402, ECO:0000269|PubMed:20404519, ECO:0000269|PubMed:21350342, ECO:0000269|PubMed:21693696, ECO:0000269|PubMed:24388849, ECO:0000269|PubMed:24556575, ECO:0000269|PubMed:26071421, ECO:0000269|PubMed:27251392}.,FUNCTION: Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway. {ECO:0000269|PubMed:17600708, ECO:0000269|PubMed:18667726, ECO:0000269|PubMed:19124768}.,FUNCTION: Serine/threonine-kinase of unknown function. MISCELLANEOUS: Interaction with BRI1 activates both receptor kinases and the full activation of either receptor kinase requires transphosphorylation by their partners. This interaction in vitro is magnesium dependent. Instantaneous heteromeric complex formation between FLS2 and BAK1 and reciprocal transphosphorylation after binding of the flagellin flg22 ligand to FLS2. The kinase activity is not required for the complex formation.; MISCELLANEOUS: The interaction with the bacterial effectors AvrPto and AvrPtoB/hopAB2 interfers with FLS2 binding and plant immunity.; MISCELLANEOUS: Phosphorylated residues T-450 and T-455 have stronger functional effects than other phosphorylated residues by interacting with both the catalytic and activation loops to achieve a conformational stability, locking BAK1 kinase in the active conformation. {ECO:0000305|PubMed:22547027}. 2.7.10.1; 2.7.11.1,2.7.11.1 68161,68635,66981,54059,73701 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (AtBAK1) (BRI1-associated receptor kinase 1) (EC 2.7.10.1) (EC 2.7.11.1) (Protein ELONGATED) (Somatic embryogenesis receptor kinase 3) (AtSERK3) (Somatic embryogenesis receptor-like kinase 3),Somatic embryogenesis receptor kinase 4 (AtSERK4) (EC 2.7.10.1) (EC 2.7.11.1) (Protein BAK1-like 1) (AtBKK1) (Somatic embryogenesis receptor-like kinase 2),Somatic embryogenesis receptor kinase 5 (AtSERK5) (EC 2.7.11.1) (Somatic embryogenesis receptor-like kinase 5),Somatic embryogenesis receptor-like kinase 5,BRI1-associated receptor kinase endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; receptor serine/threonine kinase binding [GO:0033612]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; receptor serine/threonine kinase binding [GO:0033612]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; brassinosteroid mediated signaling pathway [GO:0009742]; cell death [GO:0008219]; cell surface receptor signaling pathway [GO:0007166]; negative regulation of cell death [GO:0060548]; protein phosphorylation [GO:0006468]; regulation of seedling development [GO:1900140]; response to chitin [GO:0010200],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; receptor binding [GO:0005102]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; receptor binding [GO:0005102]; signal transduction [GO:0007165],endosome [GO:0005768]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein heterodimerization activity [GO:0046982]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; receptor binding [GO:0005102]; brassinosteroid mediated signaling pathway [GO:0009742]; cell death [GO:0008219]; cell growth [GO:0016049]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to oomycetes [GO:0002229] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:12150929}. locus:2040461;,locus:2040471;,locus:2119260; AT4G33430,AT2G13790,AT2G13800 receptor kinase NA NA NA NA NA NA NA ENOG411DZ65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411DZ66 PRA1H,PRA1.H Q8LFP1,A0A1P8B672 PRA1H_ARATH,A0A1P8B672_ARATH PRA1 family protein H (AtPRA1.H),PRA1 family protein FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}.,FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. 26069,22592 PRA1 family protein H (AtPRA1.H),PRA1 family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2137692; AT4G27540 PRA1 family PRA1 family protein Q0J3B7 Q0J3B7_ORYSJ Os09g0134400 Os09g0134400 OSNPB_090134400 FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. ENOG411DZ60 Q9SJA5,Q9FH33,Q9SY76,F4IPR3,Q9FX13,A0A1R7T3B3,F4K1U0,F4I4B0,F4HT36 Q9SJA5_ARATH,Q9FH33_ARATH,Q9SY76_ARATH,F4IPR3_ARATH,Q9FX13_ARATH,A0A1R7T3B3_ARATH,F4K1U0_ARATH,F4I4B0_ARATH,F4HT36_ARATH Ankyrin repeat family protein (Expressed protein) (Uncharacterized protein At2g24600),Ankyrin repeat family protein (At5g54720) (Gb|AAD32884.1),Ankyrin repeat family protein (At1g10340/F14N23_22) (F14N23.22),Ankyrin repeat family protein,Ankyrin repeat family protein (F12G12.13 protein),Ankyrin-repeat containing protein 60643,21343,63922,66572,63845,70923,66042,63590,11287 Ankyrin repeat family protein (Expressed protein) (Uncharacterized protein At2g24600),Ankyrin repeat family protein (At5g54720) (Gb|AAD32884.1),Ankyrin repeat family protein (At1g10340/F14N23_22) (F14N23.22),Ankyrin repeat family protein,Ankyrin repeat family protein (F12G12.13 protein),Ankyrin-repeat containing protein integral component of membrane [GO:0016021],chloroplast [GO:0009507]; signal recognition particle, chloroplast targeting [GO:0080085]; protein import into chloroplast thylakoid membrane [GO:0045038]; response to light stimulus [GO:0009416],integral component of membrane [GO:0016021]; membrane [GO:0016020]; signal transduction [GO:0007165] locus:2157558;,locus:2012873;,locus:2046628;,locus:2009046;,locus:2157553;,locus:5019474634; AT2G24600,AT5G54720,AT1G10340,AT1G34050,AT5G54710,AT1G34046 Ankyrin repeat-containing protein NA NA NA NA NA NA NA ENOG411DZ61 CAX1,CAX3 Q39253,Q93Z81,F4IS06,A0A1I9LSS9 CAX1_ARATH,CAX3_ARATH,F4IS06_ARATH,A0A1I9LSS9_ARATH Vacuolar cation/proton exchanger 1 (Ca(2+)/H(+) antiporter CAX1) (Ca(2+)/H(+) exchanger 1) (Protein CATION EXCHANGER 1) (Protein RARE COLD INDUCIBLE 4),Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) antiporter CAX3) (Ca(2+)/H(+) exchanger 3) (Protein CATION EXCHANGER 3),Cation exchanger 1,Cation exchanger 3 DISRUPTION PHENOTYPE: Plants exhibit a 50% reduction in tonoplast Ca(2+)/H(+) exchange activity, a 40% reduction in tonoplast V-type H(+)-translocating ATPase activity, a 36% increase in tonoplast Ca(2+)-ATPase activity and an increased expression of CAX3 and CAX4. These plants exhibit altered plant development, perturbed hormone sensitivities, altered auxin signaling response, lower sensitivity to other metal ions and increased freezing tolerance after cold acclimation. {ECO:0000269|PubMed:16055687}. Short roots; Few, short lateral roots; Short inflorescence stems; Decreased branching-K. Hirschi-2003,Sensitive to calcium-K. Hirschi-2005 FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase. Involved in ion homeostasis in association with CAX3. May play a role in cold-acclimation response. {ECO:0000269|PubMed:12566577, ECO:0000269|PubMed:14630965, ECO:0000269|PubMed:16055687}.,FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase (By similarity). Involved in ion homeostasis in association with CAX1. {ECO:0000250, ECO:0000269|PubMed:16055687}. 50177,49851,43298,51289 Vacuolar cation/proton exchanger 1 (Ca(2+)/H(+) antiporter CAX1) (Ca(2+)/H(+) exchanger 1) (Protein CATION EXCHANGER 1) (Protein RARE COLD INDUCIBLE 4),Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) antiporter CAX3) (Ca(2+)/H(+) exchanger 3) (Protein CATION EXCHANGER 3),Cation exchanger 1,Cation exchanger 3 integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole membrane [GO:0009705]; vacuole [GO:0005773]; calcium:proton antiporter activity [GO:0015369]; calcium ion transport [GO:0006816]; cellular manganese ion homeostasis [GO:0030026]; cellular zinc ion homeostasis [GO:0006882]; cold acclimation [GO:0009631]; phosphate ion homeostasis [GO:0055062]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; calcium:proton antiporter activity [GO:0015369]; cellular calcium ion homeostasis [GO:0006874]; cellular manganese ion homeostasis [GO:0030026]; cellular zinc ion homeostasis [GO:0006882]; phosphate ion homeostasis [GO:0055062]; phosphorus metabolic process [GO:0006793]; response to calcium ion [GO:0051592]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; calcium:proton antiporter activity [GO:0015369]; cytochrome-c oxidase activity [GO:0004129],integral component of membrane [GO:0016021]; calcium:proton antiporter activity [GO:0015369] TISSUE SPECIFICITY: Expressed at low levels in leaves, stems and flowers. {ECO:0000269|PubMed:14630965}.,TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:11080595}. locus:2042852;,locus:2074348; AT2G38170,AT3G51860 Vacuolar cation proton exchanger Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger 1a) (OsCAX1a),Vacuolar cation/proton exchanger 1b (Ca(2+)/H(+) exchanger 1b) (OsCAX1b),Os12g0351750 protein Q769E5,Q5TKG3,B9G299 CAX1A_ORYSJ,CAX1B_ORYSJ,B9G299_ORYSJ CAX1a Os01g0557500 LOC_Os01g37690 B1144D11.14 OJ1014_G12.40,CAX1b Os05g0594200 LOC_Os05g51610 OsJ_19769 OSJNBa0030I14.3,Os12g0351750 OsJ_28496 OSNPB_120351750 FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase. {ECO:0000269|PubMed:14561741, ECO:0000269|PubMed:16043430}.,FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase. {ECO:0000269|PubMed:16043430}. ENOG411DZ62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Poly(A) polymerase predicted RNA binding domain Os02g0227400 protein (Putative poly(A) polymerase),Os06g0558700 protein (Fragment) Q6H5Y8,A0A0P0WY39 Q6H5Y8_ORYSJ,A0A0P0WY39_ORYSJ Os02g0227400 OsJ_05959 OSNPB_020227400 P0620H05.9,Os06g0558700 OSNPB_060558700 ENOG411DZ63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (By similarity) Catalase isozyme A (CAT-A) (EC 1.11.1.6),Os02g0115700 protein (Fragment) Q0E4K1,A0A0P0VDW7,A0A0P0VDY9 CATA1_ORYSJ,A0A0P0VDW7_ORYSJ,A0A0P0VDY9_ORYSJ CATA Os02g0115700 LOC_Os02g02400 OJ1442_E05.8-1 OsJ_004973 P0036E06.27-1,Os02g0115700 OSNPB_020115700 FUNCTION: Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. ENOG411DZ68 TPR5 Q5XF05,F4I546 Q5XF05_ARATH,F4I546_ARATH At1g56440 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g56440),Tetratricopeptide repeat (TPR)-like superfamily protein 53641,52429 At1g56440 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g56440),Tetratricopeptide repeat (TPR)-like superfamily protein locus:2010688; AT1G56440 RNA polymerase II-associated protein Os05g0129900 protein (cDNA clone:001-011-C12, full insert sequence) (cDNA clone:J033095K15, full insert sequence) Q0DL11 Q0DL11_ORYSJ Os05g0129900 Os05g0129900 OSNPB_050129900 ENOG411DZ6E RPT3,NPH3 Q9FMF5,A0A1P8BBW9 RPT3_ARATH,A0A1P8BBW9_ARATH Root phototropism protein 3 (BTB/POZ domain-containing protein RPT3) (Non-phototropic hypocotyl protein 3),Phototropic-responsive NPH3 family protein DISRUPTION PHENOTYPE: Impaired leaf flattening and slight epinasty when grown under blue light. {ECO:0000269|PubMed:20071603}. Reduced phototropism-E. Liscum-1999 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Involved in the phot1 pathway under low blue light (LBL) fluence rate and in the phot2 pathway under higher fluence rate of blue light (HBL). Necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Not involved in chloroplast accumulation and translocation. {ECO:0000250, ECO:0000269|PubMed:10542152, ECO:0000269|PubMed:10662859, ECO:0000269|PubMed:15031408, ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:20071603}. PATHWAY: Protein modification; protein ubiquitination. 81873,66439 Root phototropism protein 3 (BTB/POZ domain-containing protein RPT3) (Non-phototropic hypocotyl protein 3),Phototropic-responsive NPH3 family protein plasma membrane [GO:0005886]; signal transducer activity [GO:0004871]; phototropism [GO:0009638]; protein ubiquitination [GO:0016567],protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in hypocotyls, guard cells and mesophyll cells. {ECO:0000269|PubMed:15031408}. locus:2173418; AT5G64330 phototropism protein Coleoptile phototropism protein 1 (BTB/POZ domain-containing protein CPT1) (Non-phototropic hypocotyl 3-like protein) (NPH3-like protein) Q5KS50 NPH3_ORYSJ CPT1 Os02g0568200 LOC_Os02g35970 P0020D05.32 P0025F02.3 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Plays a role as signal transduction component in coleoptile phototropism and lateral translocation of auxin. {ECO:0000250, ECO:0000269|PubMed:15598797}. ENOG411DZ6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os09g0516450 protein,Os01g0706266 protein,Os02g0493100 protein,Os01g0596600 protein Q69IL1,A0A0P0V768,A0A0P0VJA5,A0A0P0V4U2 Q69IL1_ORYSJ,A0A0P0V768_ORYSJ,A0A0P0VJA5_ORYSJ,A0A0P0V4U2_ORYSJ Os09g0516450 OSJNBb0034B12.12 OSNPB_090516450 P0450E05.37,Os01g0706266 OSNPB_010706266,Os02g0493100 OSNPB_020493100,Os01g0596600 OSNPB_010596600 ENOG411DZ6G NHX1,NHX2 Q68KI4,Q56XP4,A0A178VK89 NHX1_ARATH,NHX2_ARATH,A0A178VK89_ARATH Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1) (NHE-1),Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2),Sodium hydrogen exchanger 2 Reduced monovalent cation-dependent proton transport activity. Vacuoles isolated from leaves had a much lower Na+/H+ exchange activity. Altered leaf development with a reduction in the frequency of large epidermal cells and a reduction in overally leaf area compared to wt plants. Abnormal leaf growth-E. Blumwald-2003 FUNCTION: Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. Can also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification. Required during leaves expansion, probably to stimulate epidermal cell expansion. Confers competence to grow in high salinity conditions. {ECO:0000269|PubMed:10455050, ECO:0000269|PubMed:10767428, ECO:0000269|PubMed:10998367, ECO:0000269|PubMed:11606781, ECO:0000269|PubMed:11707435, ECO:0000269|PubMed:14535887, ECO:0000269|PubMed:16179357, ECO:0000269|PubMed:9990049}.,FUNCTION: Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification. {ECO:0000269|PubMed:12047628}. MISCELLANEOUS: Inhibition of Na(+) transport activity but not of K(+) transport activity is mediated by binding with CML18/CAM15. Inhibited by the diuretic compound amiloride and its analogs ethylisopropyl-amiloride (EIPA), 5-(N-ethyl-N-isopropyl)amiloride (MIA), and benzamil. Also down-regulated by quinine. R-ATH-425986; 59513,60523,49988 Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1) (NHE-1),Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2),Sodium hydrogen exchanger 2 endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; calmodulin binding [GO:0005516]; potassium:proton antiporter activity [GO:0015386]; sodium:proton antiporter activity [GO:0015385]; leaf development [GO:0048366]; potassium ion homeostasis [GO:0055075]; potassium ion transmembrane transport [GO:0071805]; regulation of intracellular pH [GO:0051453]; regulation of stomatal closure [GO:0090333]; response to salt stress [GO:0009651]; sodium ion import across plasma membrane [GO:0098719],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; potassium:proton antiporter activity [GO:0015386]; sodium:proton antiporter activity [GO:0015385]; potassium ion homeostasis [GO:0055075]; potassium ion import [GO:0010107]; regulation of intracellular pH [GO:0051453]; regulation of stomatal closure [GO:0090333]; response to salt stress [GO:0009651]; sodium ion import across plasma membrane [GO:0098719],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; sodium:proton antiporter activity [GO:0015385]; potassium ion homeostasis [GO:0055075]; regulation of pH [GO:0006885]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Present in flowers, particularly in petals, stamens and anthers (including pollen). Slightly expressed in developing ovaries, strongly expressed in developing embryos and in siliques outer integuments (mostly in base and tips). During first days after germination, mainly localized in roots, including root tips. Later, ubiquitous except in root tips. {ECO:0000269|PubMed:12369629, ECO:0000269|PubMed:14535887}. TISSUE SPECIFICITY: Ubiquitous, with higher levels around vascular tissues and guard cells. {ECO:0000269|PubMed:10767428, ECO:0000269|PubMed:12047628, ECO:0000269|PubMed:12369629, ECO:0000269|PubMed:14535887}.,TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:12047628}. locus:2181246;,locus:2114810; AT5G27150,AT3G05030 Sodium hydrogen exchanger Sodium/hydrogen exchanger,Na+/H+ exchanger (Os05g0148600 protein) (Putative Na+/H+ antiporter) (Sodium/proton antiporter),Sodium/hydrogen exchanger (Fragment) Q9SXJ8,Q6UUW2,Q2R0E9,A0A0P0Y502 Q9SXJ8_ORYSJ,Q6UUW2_ORYSJ,Q2R0E9_ORYSJ,A0A0P0Y502_ORYSJ OsNHX1 Os07g0666900 P0450A04.124 OSNPB_070666900,NHX2 OsNHX3 Os05g0148600 OsJ_17122 OSJNBa0077J22.22 OSNPB_050148600,Os11g0648000 OsNHX2 LOC_Os11g42790 Os11g0648000 OSNPB_110648000,Os11g0648000 OSNPB_110648000 ENOG411DZ6A GIF1,AN3 Q8L8A5,A0A1R7T3A9 GIF1_ARATH,A0A1R7T3A9_ARATH GRF1-interacting factor 1 (AtGIF1) (Protein ANGUSTIFOLIA 3) (Transcription coactivator GIF1),SSXT family protein DISRUPTION PHENOTYPE: Small and narrow lateral organs, such as leaves, cotyledons, and flowers. Significant defects in the number of cells in both the leaf blade and leaf petiole. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617, ECO:0000269|PubMed:19648231, ECO:0000269|PubMed:21880932}. Cell number in first leaves decreased to <20% of the wild type level and cell size increased to more than 2.5-fold the wild type size. Narrow cotyledons, leaves, and petals; Increased rosette leaf number-H. Kende-2004 FUNCTION: Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. Appears to function synergistically with GRF1 as a transcriptional coactivator. Acts together with GRF5 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. Plays a role in adaxial/abaxial patterning and growth in leaf morphogenesis. GIFs are involved in the positive regulation of cell proliferation of lateral organs in a functionally redundant manner. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617, ECO:0000269|PubMed:19648231, ECO:0000269|PubMed:21097896}. 22464,15298 GRF1-interacting factor 1 (AtGIF1) (Protein ANGUSTIFOLIA 3) (Transcription coactivator GIF1),SSXT family protein transcription coactivator activity [GO:0003713]; adaxial/abaxial pattern specification [GO:0009955]; cell proliferation [GO:0008283]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips and flower buds. Also expressed in mature flowers. Not expressed in the shoot apical meristem (SAM). Highly accumulated in the proximal part of leaf primordia, in the key proliferative zone at the junction region between the leaf blade and leaf petiole. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617, ECO:0000269|PubMed:21036927, ECO:0000269|PubMed:21097896, ECO:0000269|PubMed:21880932}. locus:2148810; AT5G28640 factor 1 Expressed protein (Os03g0733600 protein) (Putative calcium-responsive transcription coactivator) (SSXT protein containing protein, expressed) (cDNA clone:001-017-F01, full insert sequence) Q6AVI1 Q6AVI1_ORYSJ OSJNBa0079G12.3 OSJNBa0027J18.22 LOC_Os03g52320 Os03g0733600 OSNPB_030733600 ENOG411DZ6B RPI1,RPI2 Q9C998,Q9ZU38 RPI1_ARATH,RPI2_ARATH Probable ribose-5-phosphate isomerase 1 (EC 5.3.1.6) (Phosphoriboisomerase 1) (Protein RADIAL SWELLING 10),Probable ribose-5-phosphate isomerase 2 (EC 5.3.1.6) (Phosphoriboisomerase 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (permissive temperature of 21 degrees Celsius), but mutant plants have a temperature-sensitive phenotype (when transferred to 31 degrees Celsius) showing radially swollen roots and reduction in cellulose production. {ECO:0000269|PubMed:17059404}.,DISRUPTION PHENOTYPE: Retarded growth and slight chlorosis due to decreased chloroplast photosynthetic capacity. Reduced accumulation of starch in leaves. Late flowering when grown under short-day conditions. {ECO:0000269|PubMed:19744161}. After 4 days at 31°C root hairs emerge in the region that would formerly have been the meristem.,Bulging of epidermal cells is observed in roots but not in the hypocotyl.,Flowers leaves and trichomes are normal.,Hypocotyl phenotype is modest in mature aerial parts of the plant.,In mutant seedlings hypocotyl swelling is constitutively observed both at 21°C and 31°C (although slightly more important in the latter case).,Phenotype pronounced in seedlings in particular after the transfer of plants initially grown at 21°C to the elevated temperature of 31°C but is not obvious in mature plants.,Reduction in cellulosic glucose. The non-cellulosic matrix polysaccharides showed a reduction in fucose increase in arabinose and to a lesser extent xylose. No significant changes in the levels of rhamnose mannose and galactose are observed.,Roots of the mutants are similar to those of wild type when grown at 21°C. After transfer to 31°C their roots progressively increase in diameter between day s 5 and 9. Extended treatment at this temperature leads to the drastic reduction in root elongation and of the elongation zone itself.,Significant reduction in cellulose.,Stem regrowth is reduced.,Low chlorophyll content. Chloroplast were smaller and accumulated fewer and smaller starch granules than wild-type. Under short-day conditions the flowering times of the mutant plants were significantly delayed. Premature cell death. Thick hypocotyl and seedling roots-R. Williamson-2006,Semi-dwarf; Chlorotic; Abnormal chloroplast morphology; Low starch levels under short days-Z. Mou-2009 FUNCTION: Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. {ECO:0000250}.,FUNCTION: Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. {ECO:0000269|PubMed:19744161}. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1. ARA:AT1G71100-MONOMER;,ARA:AT2G01290-MONOMER; R-ATH-71336; 5.3.1.6; 5.3.1.6 28332,28516 Probable ribose-5-phosphate isomerase 1 (EC 5.3.1.6) (Phosphoriboisomerase 1) (Protein RADIAL SWELLING 10),Probable ribose-5-phosphate isomerase 2 (EC 5.3.1.6) (Phosphoriboisomerase 2) cytoplasm [GO:0005737]; cytosol [GO:0005829]; ribose-5-phosphate isomerase activity [GO:0004751]; cellulose biosynthetic process [GO:0030244]; pentose-phosphate shunt, non-oxidative branch [GO:0009052]; response to karrikin [GO:0080167]; uridine biosynthetic process [GO:0046109],cytoplasm [GO:0005737]; ribose-5-phosphate isomerase activity [GO:0004751]; cell death [GO:0008219]; pentose-phosphate shunt, non-oxidative branch [GO:0009052]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:17059404}. locus:2026296;,locus:2038801; AT1G71100,AT2G01290 Ribose-5-phosphate NA NA NA NA NA NA NA ENOG411DZ6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0427000 protein A0A0P0Y9L2 A0A0P0Y9L2_ORYSJ Os12g0427000 OSNPB_120427000 ENOG411DZ6N O80960 O80960_ARATH At2g39210/T16B24.15 (Major facilitator superfamily protein) (Nodulin-like protein) 66045 At2g39210/T16B24.15 (Major facilitator superfamily protein) (Nodulin-like protein) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; defense response to fungus [GO:0050832]; transmembrane transport [GO:0055085] locus:2056103; AT2G39210 Nodulin-like Os07g0187900 protein (Putative nodule-specific protein),Nodulin family protein, putative, expressed (Os03g0800000 protein) (Putative nodule-specific protein) Q6Z4F2,Q851R0 Q6Z4F2_ORYSJ,Q851R0_ORYSJ Os07g0187900 OsJ_23380 OSJNBb0002L09.1 OSJNBb0084L07.13 OSNPB_070187900,OSJNBa0052F07.13 Os03g0800000 LOC_Os03g58580 OSNPB_030800000 ENOG411DZ6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NAC domain-containing protein 48 (ONAC048) (OsNAC6) (Protein STRESS-RESPONSIVE NAC 2),Os05g0421600 protein Q7F2L3,Q0DI26 NAC48_ORYSJ,Q0DI26_ORYSJ NAC048 NAC6 SNAC2 Os01g0884300 LOC_Os01g66120 B1065E10.51 OsJ_04317,Os05g0421600 Os05g0421600 OSNPB_050421600 DISRUPTION PHENOTYPE: Increased root length in young seedlings. {ECO:0000269|PubMed:19453457}. FUNCTION: Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. MISCELLANEOUS: Plants overexpressing NAC048 exhibit growth retardation (PubMed:17587305, PubMed:20632034). Plants overexpressing NAC048 exhibit improved tolerance to drought stress (PubMed:17587305, PubMed:27892643). Plants overexpressing NAC048 show increased tolerance to salt stress (PubMed:17587305, PubMed:18273684). Plants overexpressing NAC048 exhibit increased tolerance to cold stress (PubMed:18273684). Plants overexpressing NAC048 show increased resistance to rice blast fungus (PubMed:17587305). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. ENOG411DZ6I Q5Q0B0,Q1PDZ3,A0A1P8BFY2 Q5Q0B0_ARATH,Q1PDZ3_ARATH,A0A1P8BFY2_ARATH Uncharacterized protein 71707,71835,61731 Uncharacterized protein locus:2183404; AT5G07380 NA Os01g0103900 protein Q658D6 Q658D6_ORYSJ Os01g0103900 OSNPB_010103900 P0436E04.11 ENOG411DZ6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family Aldo/keto reductase family-like protein (Os07g0142900 protein) Q8H4J8 Q8H4J8_ORYSJ OJ1351_C05.128 Os07g0142900 OsJ_23061 OSNPB_070142900 ENOG411DZ6K ASK6,ASK9,ASK7,BIN2 Q39010,Q39012,Q39011,F4JRM5 KSG6_ARATH,KSG9_ARATH,KSG7_ARATH,F4JRM5_ARATH Shaggy-related protein kinase zeta (EC 2.7.11.1) (ASK-zeta) (Shaggy-related protein kinase 2-2) (AtSK2-2) (Shaggy-related protein kinase 23) (AtSK23),Shaggy-related protein kinase iota (EC 2.7.11.1) (ASK-iota) (GSK3/shaggy-related protein kinase 1) (AtGSK1) (Protein BIN2-like 2) (Shaggy-related protein kinase 2-3) (AtSK2-3) (Shaggy-related protein kinase 22) (AtSK22),Shaggy-related protein kinase eta (EC 2.7.11.1) (ASK-eta) (Protein BRASSINOSTEROID INSENSITIVE 2) (Protein ULTRACURVATA 1) (Shaggy-related protein kinase 21) (AtSK21),Protein kinase superfamily protein Sensitive to brassinosteroids-J. Li -2009 FUNCTION: May mediate extracellular signals to regulate transcription in differentiating cells. {ECO:0000250}.,FUNCTION: Phosphorylates BSK1, BSK3, BSK5, BSK6, BSK8 AND BSK11 in vitro (PubMed:23496207). May mediate extracellular signals to regulate transcription in differentiating cells (By similarity). {ECO:0000250, ECO:0000269|PubMed:23496207}.,FUNCTION: Negative regulator in brassinosteroid signal transduction pathway important for plant growth. May be also involved in auxin signaling pathway. Phosphorylates and increases the degradation of BZR1 and BZR2/BES1 by the proteasome. Phosphorylates BHLH150, beet curly top virus C4 and tomato golden mosaic virus AC4 on threonine and serine residues. Upon brassinosteroid signaling, inhibits stomatal development by phosphorylating and inhibiting the MAPKK kinase YDA and the MAPK kinases MKK4 and MKK5 (PubMed:11847343, PubMed:12114546, PubMed:12427989, PubMed:17280695, PubMed:22307275, PubMed:23341468). Phosphorylates BSK1, BSK3, BSK5, BSK6, BSK8 AND BSK11 in vitro (PubMed:23496207). {ECO:0000269|PubMed:11847343, ECO:0000269|PubMed:12114546, ECO:0000269|PubMed:12427989, ECO:0000269|PubMed:17280695, ECO:0000269|PubMed:22307275, ECO:0000269|PubMed:23341468, ECO:0000269|PubMed:23496207}. MISCELLANEOUS: Unlike other GSK3 kinases, does not require a priming phosphorylation event or the presence of a scaffold protein to phosphorylate its substrates. R-ATH-3371453; 2.7.11.26; 2.7.11.1 46455,46024,43099,30933 Shaggy-related protein kinase zeta (EC 2.7.11.1) (ASK-zeta) (Shaggy-related protein kinase 2-2) (AtSK2-2) (Shaggy-related protein kinase 23) (AtSK23),Shaggy-related protein kinase iota (EC 2.7.11.1) (ASK-iota) (GSK3/shaggy-related protein kinase 1) (AtGSK1) (Protein BIN2-like 2) (Shaggy-related protein kinase 2-3) (AtSK2-3) (Shaggy-related protein kinase 22) (AtSK22),Shaggy-related protein kinase eta (EC 2.7.11.1) (ASK-eta) (Protein BRASSINOSTEROID INSENSITIVE 2) (Protein ULTRACURVATA 1) (Shaggy-related protein kinase 21) (AtSK21),Protein kinase superfamily protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; brassinosteroid mediated signaling pathway [GO:0009742]; protein phosphorylation [GO:0006468]; regulation of protein localization [GO:0032880],cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; brassinosteroid mediated signaling pathway [GO:0009742]; hyperosmotic salinity response [GO:0042538]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of protein localization [GO:0032880],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; brassinosteroid mediated signaling pathway [GO:0009742]; detection of brassinosteroid stimulus [GO:0009729]; leaf morphogenesis [GO:0009965]; multidimensional cell growth [GO:0009825]; negative regulation of brassinosteroid mediated signaling pathway [GO:1900458]; positive regulation of protein export from nucleus [GO:0046827]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; response to auxin [GO:0009733]; root hair cell differentiation [GO:0048765]; viral process [GO:0016032],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: In the two outer cell layers of the developing seed coat and restricted to the suspensor cells in developing embryos. {ECO:0000269|PubMed:10080716}. locus:2052861;,locus:2202255;,locus:2124082; AT2G30980,AT1G06390,AT4G18710 SHAGGY-related protein kinase Shaggy-related protein kinase GSK2 (EC 2.7.11.1) (Glycogen synthase kinase3-like protein 2) (OsGSK2),Shaggy-related protein kinase GSK1 (EC 2.7.11.1) (Glycogen synthase kinase3-like protein 1) (OsGSK1),Os02g0236200 protein (Putative Shaggy-related protein kinase dzeta (ASK-dzeta)) Q60EZ2,Q9LWN0,Q6EUS4 GSK2_ORYSJ,GSK1_ORYSJ,Q6EUS4_ORYSJ GSK2 Os05g0207500 LOC_Os05g11730 OJ1430_B02.4,GSK1 Os01g0205700 LOC_Os01g10840 P0451C06.26,Os02g0236200 OJ1077_A12.17 OSNPB_020236200 DISRUPTION PHENOTYPE: Increased length of spikelet awns and weight of seeds. Increased sentivity to brassinolide. Enhanced tolerance to drought, salt, cold and heat stresses. {ECO:0000269|PubMed:17690841}. FUNCTION: Serine-threonine kinase that acts as a negative regulator of brassinosteroid (BR) signaling (PubMed:22685166, PubMed:27332964). Phosphorylates DLT and BZR1, two positive regulators that mediates several BR responses. Phosphorylation of DLT and BZR1 inhibits their activities in BR signaling (PubMed:22685166). Phosphorylates OFP8, a positive regulator of BR responses. Phosphorylated OFP8 shuttles from the nucleus to the cytoplasm where it is degraded by the proteasome (PubMed:27332964). {ECO:0000269|PubMed:22685166, ECO:0000269|PubMed:27332964}.,FUNCTION: Probable serine-threonine kinase that may act as a negative regulator of brassinosteroid (BR) signaling during flower development. May have physiological roles in stress signal-transduction pathways (PubMed:17690841). Phosphorylates LIC in response to BR perception (PubMed:22570626). {ECO:0000269|PubMed:17690841, ECO:0000269|PubMed:22570626}. MISCELLANEOUS: Plants over-expressing GSK2 display typical brassinosteroid (BR) loss-of-function phenotypes, and plants silencing GSK2 have enhanced BR signaling phenotypes. {ECO:0000269|PubMed:22685166}. ENOG411DZ6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DZ6U Z-ISO Q9SAC0,A0A1P8AWQ2 ZCIS_ARATH,A0A1P8AWQ2_ARATH 15-cis-zeta-carotene isomerase, chloroplastic (EC 5.2.1.12),15-cis-zeta-carotene isomerase DISRUPTION PHENOTYPE: Lacks carotenoids in the dark and exhibits delayed greening when exposed to light. {ECO:0000269|PubMed:20335404}. FUNCTION: Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'-tri-cis-zeta-carotene. {ECO:0000269|PubMed:20335404}. MetaCyc:AT1G10830-MONOMER; 5.2.1.12 40851,24216 15-cis-zeta-carotene isomerase, chloroplastic (EC 5.2.1.12),15-cis-zeta-carotene isomerase chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; 9,15,9'-tri-cis-zeta-carotene isomerase activity [GO:0090471]; carotene biosynthetic process [GO:0016120],integral component of membrane [GO:0016021]; isomerase activity [GO:0016853] TISSUE SPECIFICITY: Expressed in leaves and at lower levels in roots. {ECO:0000269|PubMed:20335404}. locus:2196475; AT1G10830 isomerase activity Expressed protein (Os12g0405200 protein) (cDNA clone:J013058N03, full insert sequence) Q2QT64 Q2QT64_ORYSJ Os12g0405200 LOC_Os12g21710 Os12g0405200 OsJ_35845 OSNPB_120405200 ENOG411DZ6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GATA transcription factor NA NA NA NA NA NA NA ENOG411DZ6W Q0WLY0,F4JLJ3 Q0WLY0_ARATH,F4JLJ3_ARATH KH domain-containing protein (Putative single-strand nucleic acid-binding protein),KH domain-containing protein R-ATH-450604; 80439,73167 KH domain-containing protein (Putative single-strand nucleic acid-binding protein),KH domain-containing protein cytosol [GO:0005829]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2012713;,locus:2140513; AT1G33680,AT4G10070 KH domain-containing protein Os08g0110800 protein,Os08g0110800 protein (Fragment) A0A0P0XB22,A0A0P0XBI1,A0A0P0XB00,A0A0P0XBH6 A0A0P0XB22_ORYSJ,A0A0P0XBI1_ORYSJ,A0A0P0XB00_ORYSJ,A0A0P0XBH6_ORYSJ Os08g0110800 OSNPB_080110800 ENOG411DZ6P Q9SK61 Q9SK61_ARATH Expressed protein (RNA-binding ASCH domain protein) 37569 Expressed protein (RNA-binding ASCH domain protein) nucleus [GO:0005634]; transcription coactivator activity [GO:0003713]; positive regulation of transcription, DNA-templated [GO:0045893] locus:2038947; AT2G20410 ASCH domain Os03g0860000 protein C7J057 C7J057_ORYSJ Os03g0860000 OSNPB_030860000 ENOG411DZ6Q Q9LPM5,Q9LJM6 Q9LPM5_ARATH,Q9LJM6_ARATH F2J10.8 protein (Formin-like protein, putative (DUF1005)) (Uncharacterized protein At1g50040),Uncharacterized protein At3g19680 49649,51962 F2J10.8 protein (Formin-like protein, putative (DUF1005)) (Uncharacterized protein At1g50040),Uncharacterized protein At3g19680 plasma membrane [GO:0005886]; plastid [GO:0009536] locus:2031075;,locus:2091186; AT1G50040,AT3G19680 Protein of unknown function (DUF1005) NA NA NA NA NA NA NA ENOG411DZ6R CPA,NLP1 Q8VYF5,A0A1P8AZH4 NILP1_ARATH,A0A1P8AZH4_ARATH N-carbamoylputrescine amidase (EC 3.5.1.53) (Nitrilase-like protein 1),Nitrilase-like protein 1 FUNCTION: Involved in polyamine biosynthesis. {ECO:0000269|PubMed:12435743}. PATHWAY: Amine and polyamine biosynthesis; putrescine biosynthesis via agmatine pathway; putrescine from N-carbamoylputrescine (amidase route): step 1/1. MetaCyc:MONOMER-1841; 3.5.1.53 36456,24459 N-carbamoylputrescine amidase (EC 3.5.1.53) (Nitrilase-like protein 1),Nitrilase-like protein 1 N-carbamoylputrescine amidase activity [GO:0050126]; putrescine biosynthetic process [GO:0009446]; putrescine biosynthetic process from arginine [GO:0033388],hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [GO:0016810]; nitrogen compound metabolic process [GO:0006807] TISSUE SPECIFICITY: Isoform 2 is expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:12435743}. locus:2038623; AT2G27450 N-carbamoylputrescine N-carbamoylputrescine amidase (EC 3.5.1.53) Q93XI4 AGUB_ORYSJ CPA Os02g0533900 LOC_Os02g33080 B1136H02.7 P0605D08.40 FUNCTION: Involved in polyamine biosynthesis. {ECO:0000250}. ENOG411DZ6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase Os02g0211900 protein,Os06g0586400 protein,Os06g0587200 protein,Os02g0210700 protein,Os06g0586150 protein,Os02g0211600 protein,Os06g0588800 protein,Os06g0585950 protein,Os06g0587000 protein,Os02g0107700 protein,Os06g0585982 protein,Os02g0211800 protein,Os06g0585966 protein A3A4G6,A3BD37,B9FTY2,Q6H8C5,Q69KC4,A0A0N7KEX1,A0A0P0WYQ5,A0A0P0WYI2,A0A0P0WYL7,A0A0P0VDQ9,A0A0P0WY19,A0A0P0VGF0,A0A0P0WY54 A3A4G6_ORYSJ,A3BD37_ORYSJ,B9FTY2_ORYSJ,Q6H8C5_ORYSJ,Q69KC4_ORYSJ,A0A0N7KEX1_ORYSJ,A0A0P0WYQ5_ORYSJ,A0A0P0WYI2_ORYSJ,A0A0P0WYL7_ORYSJ,A0A0P0VDQ9_ORYSJ,A0A0P0WY19_ORYSJ,A0A0P0VGF0_ORYSJ,A0A0P0WY54_ORYSJ Os02g0211900 OsJ_05866 OSNPB_020211900,Os06g0586400 OsJ_21810 OSNPB_060586400,Os06g0587200 OsJ_21821 OSNPB_060587200,Os02g0210700 Os02g0210700 OJ1006_A02.42 OSNPB_020210700,Os06g0586150 OSJNBb0035K09.21 Os06g0586150 B1047H05.14 OSNPB_060586150,Os02g0211600 OSNPB_020211600,Os06g0588800 OSNPB_060588800,Os06g0585950 OSNPB_060585950,Os06g0587000 OSNPB_060587000,Os02g0107700 OSNPB_020107700,Os06g0585982 OSNPB_060585982,Os02g0211800 OSNPB_020211800,Os06g0585966 OSNPB_060585966 ENOG411DZ6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc Probable protein phosphatase 2C 37 (OsPP2C37) (EC 3.1.3.16),Os04g0167900 protein,Os04g0167875 protein Q7XP01,A0A0P0W6Q9,A0A0P0W7M7 P2C37_ORYSJ,A0A0P0W6Q9_ORYSJ,A0A0P0W7M7_ORYSJ Os04g0167900 LOC_Os04g08560 OSJNBb0089K06.2,Os04g0167900 OSNPB_040167900,Os04g0167875 OSNPB_040167875 ENOG411DZ6Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0306400 protein (Fragment) A0A0N7KCU0 A0A0N7KCU0_ORYSJ Os01g0306400 OSNPB_010306400 ENOG411DZ6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os05g0181200 protein (Fragment) Q0DK96 Q0DK96_ORYSJ Os05g0181200 Os05g0181200 OSNPB_050181200 ENOG411DW8N PCMP-E102,MDH9.15 Q9FIH2,A0A1P8BF21 PP414_ARATH,A0A1P8BF21_ARATH Pentatricopeptide repeat-containing protein At5g42450, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein 58304,48910 Pentatricopeptide repeat-containing protein At5g42450, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2162311; AT5G42450 Pentatricopeptide repeat-containing protein Os01g0839400 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q943L3 Q943L3_ORYSJ Os01g0839400 OsJ_04019 OSNPB_010839400 P0031D11.31 P0408C03.6 ENOG411DW8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA polyphenol oxidase Os01g0793100 protein,Os04g0624500 protein (Polyphenol oxidase) (cDNA clone:002-140-G09, full insert sequence),Os04g0624300 protein (Os04g0624400 protein),Os04g0624450 protein A2ZYK9,Q0J9Z1,Q0J9Z3,A0A0P0WFB1 A2ZYK9_ORYSJ,Q0J9Z1_ORYSJ,Q0J9Z3_ORYSJ,A0A0P0WFB1_ORYSJ Os01g0793100 OsJ_03732 OSNPB_010793100,PPO Os04g0624500 OSNPB_040624500,Os04g0624400 Os04g0624300 OSNPB_040624400,Os04g0624450 OSNPB_040624450 ENOG411DW8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain of PTEN tumour-suppressor protein Os06g0184400 protein A0A0N7KLN3 A0A0N7KLN3_ORYSJ Os06g0184400 OSNPB_060184400 ENOG411DW8J Q84J71,F4INL2 PP161_ARATH,F4INL2_ARATH Pentatricopeptide repeat-containing protein At2g17670,Tetratricopeptide repeat (TPR)-like superfamily protein 51408,38947 Pentatricopeptide repeat-containing protein At2g17670,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2827891; AT2G17670 Pentatricopeptide repeat-containing protein Os02g0119700 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:002-151-A01, full insert sequence) Q6YUT0 Q6YUT0_ORYSJ Os02g0119700 OJ1217_F02.23 OsJ_05149 OSJNBb0088N06.7 OSNPB_020119700 ENOG411DW8I IRX15-L,IRX15 Q9FH92,Q9SNE5,Q9SJN8 IX15L_ARATH,IRX15_ARATH,Q9SJN8_ARATH Protein IRX15-LIKE,Protein IRREGULAR XYLEM 15 (AtIRX15),At2g15440 (Expressed protein) (Polysaccharide biosynthesis protein (DUF579)) DISRUPTION PHENOTYPE: No visible phenotype; due to redundancy with IRX15-L. Irx15 and irx15-l double mutants have a mild collapsed xylem phenotype, irregular secondary cell wall margins in fiber cells, uneven distribution of xylan in the cell wall and a lower degree of xylan polymerization, but no visible growth phenotype. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:21288268}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with IRX15-L. Irx15 and irx15-l double mutants have a mild collapsed xylem phenotype, irregular secondary cell wall margins in fiber cells, uneven distribution of xylan in the cell wall and a lower degree of xylan polymerization, but no visible growth phenotype. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:21288268}. FUNCTION: Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:21288268}. 35664,35807,36391 Protein IRX15-LIKE,Protein IRREGULAR XYLEM 15 (AtIRX15),At2g15440 (Expressed protein) (Polysaccharide biosynthesis protein (DUF579)) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan biosynthetic process [GO:0045492],integral component of membrane [GO:0016021]; xylan biosynthetic process [GO:0045492] DEVELOPMENTAL STAGE: Up-regulated during secondary cell wall deposition. {ECO:0000269|PubMed:21251108}.,DEVELOPMENTAL STAGE: Up-regulated during secondary cell wall deposition. {ECO:0000269|PubMed:16969662, ECO:0000269|PubMed:21251108}. TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems and siliques. Expressed in the xylem. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:21288268}.,TISSUE SPECIFICITY: Expressed in rosette leaves, stems and siliques. Expressed in the xylem. {ECO:0000269|PubMed:21251108, ECO:0000269|PubMed:21288268}. locus:2155518;,locus:2074815;,locus:2047158; AT5G67210,AT3G50220,AT2G15440 Plant-specific domain TIGR01627 family protein OSJNBb0059K02.7 protein (Os04g0649900 protein) (cDNA clone:006-309-A09, full insert sequence),Os05g0447800 protein Q7XMQ4,A0A0P0WN83 Q7XMQ4_ORYSJ,A0A0P0WN83_ORYSJ Os04g0649900 Os04g0649900 OsJ_16425 OSJNBb0059K02.7 OSNPB_040649900,Os05g0447800 OSNPB_050447800 ENOG411DW8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411DW8G AAPT1,AAPT2 O82567,O82568,A0A1I9LSC4,A0A1P8AWM4,F4JA27,F4HQU9 AAPT1_ARATH,AAPT2_ARATH,A0A1I9LSC4_ARATH,A0A1P8AWM4_ARATH,F4JA27_ARATH,F4HQU9_ARATH Choline/ethanolaminephosphotransferase 1 (EC 2.7.8.1) (EC 2.7.8.2) (Aminoalcohol phosphotransferase 1) (AtAAPT1),Choline/ethanolaminephosphotransferase 2 (EC 2.7.8.1) (EC 2.7.8.2) (Aminoalcohol phosphotransferase 2) (AtAAPT2),Aminoalcoholphosphotransferase,Aminoalcoholphosphotransferase 1 FUNCTION: Catalyzes both phosphatidylcholine and phosphatidylethanolamine biosynthesis from CDP-choline and CDP-ethanolamine, respectively. Has a higher cholinephosphotransferase activity than ethanolaminephosphotransferase activity. {ECO:0000269|Ref.1}. PATHWAY: Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from ethanolamine: step 3/3.; PATHWAY: Phospholipid metabolism; phosphatidylcholine biosynthesis; phosphatidylcholine from phosphocholine: step 2/2. ARA:AT1G13560-MONOMER;,ARA:AT3G25585-MONOMER;ARA:GQT-983-MONOMER; R-ATH-1483191;R-ATH-1483213; 2.7.8.1;2.7.8.2;,2.7.8.1; Glycerophospholipid metabolism (00564),Ether lipid metabolism (00565),Phosphonate and phosphinate metabolism (00440),Metabolic pathways (01100) 2.7.8.1; 2.7.8.2 43542,43639,38080,37947,37621,38418 Choline/ethanolaminephosphotransferase 1 (EC 2.7.8.1) (EC 2.7.8.2) (Aminoalcohol phosphotransferase 1) (AtAAPT1),Choline/ethanolaminephosphotransferase 2 (EC 2.7.8.1) (EC 2.7.8.2) (Aminoalcohol phosphotransferase 2) (AtAAPT2),Aminoalcoholphosphotransferase,Aminoalcoholphosphotransferase 1 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; diacylglycerol cholinephosphotransferase activity [GO:0004142]; ethanolaminephosphotransferase activity [GO:0004307]; metal ion binding [GO:0046872]; phosphatidylethanolamine biosynthetic process [GO:0006646],integral component of membrane [GO:0016021]; diacylglycerol cholinephosphotransferase activity [GO:0004142]; ethanolaminephosphotransferase activity [GO:0004307]; metal ion binding [GO:0046872]; phosphatidylethanolamine biosynthetic process [GO:0006646],integral component of membrane [GO:0016021]; phosphotransferase activity, for other substituted phosphate groups [GO:0016780]; phospholipid biosynthetic process [GO:0008654] locus:2009947;,locus:2094513; AT1G13560,AT3G25585 CDP-alcohol phosphatidyltransferase Os06g0204400 protein,Os02g0119800 protein (cDNA clone:J013091G02, full insert sequence) (cDNA clone:J013131K20, full insert sequence),Os02g0119800 protein (Fragment) Q0DDS1,Q0E4H0,A0A0P0WUC4,A0A0P0VE27 Q0DDS1_ORYSJ,Q0E4H0_ORYSJ,A0A0P0WUC4_ORYSJ,A0A0P0VE27_ORYSJ Os06g0204400 Os06g0204400 OSNPB_060204400,Os02g0119800 Os02g0119800 OsJ_05150 OSNPB_020119800,Os06g0204400 OSNPB_060204400,Os02g0119800 OSNPB_020119800 ENOG411DW8F MYOB1 F4HXQ7 MYOB1_ARATH Myosin-binding protein 1 DISRUPTION PHENOTYPE: No visible phenotype. Myob1 and myob2 double mutant has no visible phenotype, but a delayed flowering. Myob1, myob2 and myob3 triple mutant has a significant height reduction and a delayed flowering. Myob1, myob2, myob3 and myob4 quadruple mutant has a significant height reduction, a reduced rosette diameter and a delayed flowering. {ECO:0000269|PubMed:23995081}. FUNCTION: Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment. {ECO:0000269|PubMed:23995081}. 125428 Myosin-binding protein 1 integral component of membrane [GO:0016021]; transport vesicle [GO:0030133]; myosin binding [GO:0017022] TISSUE SPECIFICITY: Expressed in leaf epidermal cells, roots and root hairs. {ECO:0000269|PubMed:23995081}. locus:2825149; AT1G08800 Pfam:DUF593 Expressed protein (Os03g0799200 protein) (cDNA clone:J013128O10, full insert sequence) Q10C07 Q10C07_ORYSJ LOC_Os03g58490 Os03g0799200 OSNPB_030799200 ENOG411DW8E EIF4E1 O23252 IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 (eIF-4E-1) (eIF4E-1) (Protein cucumovirus multiplication 1) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit) (mRNA cap-binding protein) FUNCTION: Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures (By similarity). {ECO:0000250, ECO:0000269|PubMed:9680993}. R-ATH-156827;R-ATH-72662;R-ATH-72702; 26519 Eukaryotic translation initiation factor 4E-1 (eIF-4E-1) (eIF4E-1) (Protein cucumovirus multiplication 1) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit) (mRNA cap-binding protein) cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; mRNA cap binding complex [GO:0005845]; nucleolus [GO:0005730]; nucleus [GO:0005634]; P-body [GO:0000932]; translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417]; response to virus [GO:0009615] TISSUE SPECIFICITY: Expressed in all tissues except in the cells of the specialization zone of the roots. {ECO:0000269|PubMed:9680993}. locus:2117647; AT4G18040 eukaryotic translation initiation factor Eukaryotic translation initiation factor 4E-1 (eIF-4E-1) (eIF4E-1) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit) (mRNA cap-binding protein) P48599 IF4E1_ORYSJ Os01g0970400 LOC_Os01g73880 OJ1656_A11.43 FUNCTION: Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. ENOG411DW8D PMAT1,MXF12.100,MXF12.90 Q940Z5,Q9FID1,Q9FID2 PMAT1_ARATH,Q9FID1_ARATH,Q9FID2_ARATH Phenolic glucoside malonyltransferase 1 (EC 2.3.1.-),Acyltransferase-like protein (Anthocyanin acyltransferase-like protein) (At5g39090) (HXXXD-type acyl-transferase family protein),Acyltransferase-like protein (Anthocyanin acyltransferase-like protein) (At5g39080) (HXXXD-type acyl-transferase family protein) DISRUPTION PHENOTYPE: No visible phenotype, but no malonylation of glucosides. {ECO:0000269|PubMed:20626660}. Elevated naphthol levels-N. Hayashid-2010 FUNCTION: Malonyltransferase acting on xenobiotic glucosides. Has activity toward 2-Naphthol glucoside (2NAG), 1-Naphthol glucoside (1NAG), kaempferol 7-O-glucoside, kaempferol 3-O-glucoside, hydroxycoumarin glucosides, phenol-glucosides and isoflavone glucoside (daidzin), but not toward 4-coumaroyl glucoside, kaempferol 3,7-O-diglucoside, salicylic acid glucoside and phlorizin. In vivo, seems to be involved in the malonylation of 2-Naphthol glucoside while PMAT2 would be involved in the malonylation of 4-methylumbelliferone glucoside or 4-nitrophenyl glucoside. {ECO:0000269|PubMed:20626660}. ARA:AT5G39050-MONOMER;MetaCyc:AT5G39050-MONOMER;,ARA:AT5G39090-MONOMER;,ARA:AT5G39080-MONOMER; 2.3.1.- 51765,49916,51485 Phenolic glucoside malonyltransferase 1 (EC 2.3.1.-),Acyltransferase-like protein (Anthocyanin acyltransferase-like protein) (At5g39090) (HXXXD-type acyl-transferase family protein),Acyltransferase-like protein (Anthocyanin acyltransferase-like protein) (At5g39080) (HXXXD-type acyl-transferase family protein) cytosol [GO:0005829]; O-malonyltransferase activity [GO:0050736]; response to toxic substance [GO:0009636],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2177172;,locus:2177212;,locus:2177197; AT5G39050,AT5G39090,AT5G39080 transferase transferase transferring acyl groups other than amino-acyl groups NA NA NA NA NA NA NA ENOG411DW8C CYP707A2 O81077,A0A1P8B0N0,A0A1P8B0J6 ABAH2_ARATH,A0A1P8B0N0_ARATH,A0A1P8B0J6_ARATH Abscisic acid 8'-hydroxylase 2 (ABA 8'-hydroxylase 2) (EC 1.14.13.93) (Cytochrome P450 707A2),Cytochrome P450, family 707, subfamily A, polypeptide 2 DISRUPTION PHENOTYPE: Plants show a hyperdormancy phenotype. {ECO:0000269|PubMed:16543410}. ABA levels in dry seeds are 50-fold higher compared to those in wild type.,12h after imbibition the decrease in ABA content in the mutant seeds was much slower than that of wild type (ca. 70%).,ABA levels in dry seeds are 5-fold higher compared to those in wild type.,Germination of mutant seeds after dark imbibition and far red/red light treatment was slower than that of wild type seeds.,Only 10% of mutant seeds germinate immediately after harvest compared to 70% for wild type Columbia (reported to have low dormancy). This mutant has higher levels of dormancy.,The induction of GA biosynthesis and GA upregulated genes after irradiation with red light is inhibited in the mutant compared to wild type. Severely delayed germination without stratification-E. Nambara-2004 FUNCTION: Involved in the oxidative degradation of abscisic acid, but not in the isomerization of the produced 8'-hydroxyabscisic acid (8'-OH-ABA) to (-)-phaseic acid (PA). Involved in the control of seed dormancy and germination. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:16543410}. PATHWAY: Plant hormone degradation; abscisic acid degradation. MetaCyc:AT2G29090-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.13.93; 1.14.13.93 55176,39349,44324 Abscisic acid 8'-hydroxylase 2 (ABA 8'-hydroxylase 2) (EC 1.14.13.93) (Cytochrome P450 707A2),Cytochrome P450, family 707, subfamily A, polypeptide 2 integral component of membrane [GO:0016021]; (+)-abscisic acid 8'-hydroxylase activity [GO:0010295]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; abscisic acid catabolic process [GO:0046345]; abscisic acid metabolic process [GO:0009687]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; release of seed from dormancy [GO:0048838]; response to red light [GO:0010114]; response to red or far red light [GO:0009639]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] DEVELOPMENTAL STAGE: Up-regulated from late-maturation to mature dry seed. Up-regulated immediately after seed imbibition, reaching a maximum at 6 hours and decreasing therafter. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:16543410}. TISSUE SPECIFICITY: Mainly expressed in dry seeds. Lower expression in rosette leaves, flowers, siliques and stems. Not expressed in roots. Expressed in both endosperm and vascular tissues of embryo during the seed development and in cortex and endodermis in germinating embryo. {ECO:0000269|PubMed:15044947, ECO:0000269|PubMed:16543410}. locus:2066138; AT2G29090 Abscisic acid 8'-hydroxylase NA NA NA NA NA NA NA ENOG411DW8B F4JBC7 F4JBC7_ARATH HXXXD-type acyl-transferase family protein 48705 HXXXD-type acyl-transferase family protein transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; response to cytokinin [GO:0009735] locus:2092090; AT3G26040 Transferase family NA NA NA NA NA NA NA ENOG411DW8A FHY1 Q84VZ1,A0A1P8AWF1,F4HQA8 FHY1C_ARATH,A0A1P8AWF1_ARATH,F4HQA8_ARATH Flavin mononucleotide hydrolase 1, chloroplatic (AtcpFHy1) (EC 3.1.3.102) (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase) (AtcpFHy1/PyrP1) (EC 3.1.3.104) (5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase) (ARPP phosphatase),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein DISRUPTION PHENOTYPE: No visible phenotype and no effect on flavin metabolite profile and abundances. {ECO:0000269|PubMed:27490826}. FUNCTION: FMN hydrolase that catalyzes the dephosphorylation of flavin mononucleotide (FMN) to riboflavin (PubMed:22002057, PubMed:24123841, PubMed:27490826). Can also dephosphorylate 5-amino-6-(5-phospho-D-ribitylamino)uracil, also known as ARPP (PubMed:24123841, PubMed:27490826). Not required for riboflavin biosynthesis in planta, but may help maintaining flavin homeostasis within chloroplasts (PubMed:27490826). {ECO:0000269|PubMed:22002057, ECO:0000269|PubMed:24123841, ECO:0000269|PubMed:27490826}. 3.1.3.102; 3.1.3.104 27695,17031,30619 Flavin mononucleotide hydrolase 1, chloroplatic (AtcpFHy1) (EC 3.1.3.102) (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase) (AtcpFHy1/PyrP1) (EC 3.1.3.104) (5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase) (ARPP phosphatase),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; FMN hydrolase activity [GO:0090711]; protein self-association [GO:0043621]; riboflavin biosynthetic process [GO:0009231],hydrolase activity [GO:0016787]; metabolic process [GO:0008152] locus:2019873; AT1G79790 haloacid dehalogenase-like hydrolase Os11g0300400 protein (Fragment) C7J8Q3 C7J8Q3_ORYSJ Os11g0300400 OSNPB_110300400 ENOG411DW8Z GYRBM,GYRBC,GYRB1 Q94BZ7,Q9SS38,A0A1I9LTQ6 GYRBM_ARATH,GYRBP_ARATH,A0A1I9LTQ6_ARATH DNA gyrase subunit B, mitochondrial (EC 5.99.1.3),DNA gyrase subunit B, chloroplastic (EC 5.99.1.3),DNA gyrase subunit B (EC 5.99.1.3) FUNCTION: A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. {ECO:0000269|PubMed:15136745}.,FUNCTION: A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. {ECO:0000256|RuleBase:RU362094}. 5.99.1.3 81053,81048,82083 DNA gyrase subunit B, mitochondrial (EC 5.99.1.3),DNA gyrase subunit B, chloroplastic (EC 5.99.1.3),DNA gyrase subunit B (EC 5.99.1.3) chromosome [GO:0005694]; mitochondrion [GO:0005739]; nucleoid [GO:0009295]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; metal ion binding [GO:0046872]; chromosome segregation [GO:0007059]; DNA topological change [GO:0006265],chloroplast [GO:0009507]; chromosome [GO:0005694]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; metal ion binding [GO:0046872]; chromosome segregation [GO:0007059]; DNA topological change [GO:0006265],chromosome [GO:0005694]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; DNA topological change [GO:0006265] locus:2146698; AT5G04130,AT3G10270 DNA gyrase subunit B chloroplastic DNA gyrase subunit B, chloroplastic/mitochondrial (EC 5.99.1.3),DNA topoisomerase 2 (EC 5.99.1.3) (Fragment) Q5NBJ3,A0A0P0V1K1 GYRB_ORYSJ,A0A0P0V1K1_ORYSJ GYRB Os01g0268300 LOC_Os01g16290 P0011D01.27 P0667A10.1,Os01g0268300 OSNPB_010268300 FUNCTION: A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. {ECO:0000250|UniProtKB:Q94BZ7}.,FUNCTION: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. {ECO:0000256|RuleBase:RU362094}. ENOG411DW8Y CRL Q9FI46 CRL_ARATH Chromophore lyase CRL, chloroplastic (EC 4.-.-.-) (Protein CONSTITUTIVE ACTIVATOR OF AAA-ATPase 33) (Protein CRUMPLED LEAF) DISRUPTION PHENOTYPE: Abnormal organ morphology (e.g. pale green, reduced stature, crumpled and irregular margins in leaves and floral organs, and shorter roots) due to altered pattern of cell division and differentiation. Impaired plastid division leading to enlarged chloroplasts and the formation of cells lacking plastids. Reduced susceptibility to viral infection by cabbage leaf curl virus (CaLCuV). {ECO:0000269|PubMed:15086805, ECO:0000269|PubMed:19318374, ECO:0000269|PubMed:19840398}. Embryo defective; Cotyledon; Dwarf; Crumpled, pale green leaves; Short roots; Thin inflorescence stems; Severely reduced fertility; Few, large chloroplasts-Y. Machida-2004 FUNCTION: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins (By similarity). Required for plastid division, and involved in cell differentiation and regulation of the cell division plane. Maintenance of plastid homeostasis controls plant preconditioning to stress and stress acclimation. {ECO:0000250, ECO:0000269|PubMed:15086805, ECO:0000269|PubMed:19318374, ECO:0000269|PubMed:19840398, ECO:0000269|PubMed:22014227}.; FUNCTION: Confers sensitivity to cabbage leaf curl virus (CaLCuV), probably by supporting viral movement. 4.-.-.- 30330 Chromophore lyase CRL, chloroplastic (EC 4.-.-.-) (Protein CONSTITUTIVE ACTIVATOR OF AAA-ATPase 33) (Protein CRUMPLED LEAF) chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; lyase activity [GO:0016829]; cell cycle [GO:0007049]; cell division [GO:0051301]; cellular response to virus [GO:0098586]; chloroplast fission [GO:0010020]; defense response [GO:0006952]; multicellular organism development [GO:0007275]; plastid fission [GO:0043572]; protein-phycocyanobilin linkage [GO:0017009]; regulation of cell division [GO:0051302]; response to reactive oxygen species [GO:0000302]; transport of virus in host, tissue to tissue [GO:0046741] TISSUE SPECIFICITY: Mostly expressed in shoot apices, to a lower extent, in leaves, inflorescence stems, buds and cotyledons, and, at low levels, in roots and siliques. {ECO:0000269|PubMed:15086805}. locus:2157398; AT5G51020 CpeT/CpcT family (DUF1001) Expressed protein (Os11g0524300 protein) (cDNA clone:001-207-B10, full insert sequence) Q2R3F0 Q2R3F0_ORYSJ LOC_Os11g32160 Os11g0524300 OSNPB_110524300 ENOG411DW8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31),RBR-type E3 ubiquitin transferase (EC 2.3.2.31) (Fragment) Q2QLR6,A0A0P0YCE4 Q2QLR6_ORYSJ,A0A0P0YCE4_ORYSJ Os12g0631200 LOC_Os12g43560 Os12g0631200 OSNPB_120631200,Os12g0631200 OSNPB_120631200 ENOG411DW8V F4JJC3,F4JJC4 F4JJC3_ARATH,F4JJC4_ARATH Folate-sensitive fragile site protein 33731,33207 Folate-sensitive fragile site protein locus:2129605; AT4G15030 Folate-sensitive fragile site protein Fra10Ac1 Os11g0639000 protein A0A0P0Y4S5 A0A0P0Y4S5_ORYSJ Os11g0639000 OSNPB_110639000 ENOG411DW8U ANTR5 Q9FKV1 ANTR5_ARATH Probable anion transporter 5 (Phosphate transporter PHT4;6) Sensitive to salt-J. Pardo-2009 FUNCTION: Inorganic phosphate and probable anion transporter. {ECO:0000269|PubMed:18086223}. R-ATH-2672351;R-ATH-4085001;R-ATH-428643; 47166 Probable anion transporter 5 (Phosphate transporter PHT4;6) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; inorganic phosphate transmembrane transporter activity [GO:0005315]; anion transmembrane transport [GO:0098656]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18086223, ECO:0000269|PubMed:19513231}. locus:2158710; AT5G44370 transporter NA NA NA NA NA NA NA ENOG411DW8S STR6 Q94AC1 STR6_ARATH Rhodanese-like domain-containing protein 6 (Sulfurtransferase 6) (AtStr6) 64734 Rhodanese-like domain-containing protein 6 (Sulfurtransferase 6) (AtStr6) locus:2195286; AT1G09280 Serine hydrolase (FSH1) Os12g0563400 protein (Phospholipase/Carboxylesterase family protein, expressed) (cDNA clone:J013120E24, full insert sequence) Q2QNJ3 Q2QNJ3_ORYSJ Os12g0563400 LOC_Os12g37630 Os12g0563400 OSNPB_120563400 ENOG411DW8R Q8L9B5,Q8L924 CSPLP_ARATH,CSPL7_ARATH CASP-like protein 2B1 (AtCASPL2B1),CASP-like protein 2B2 (AtCASPL2B2) 20045,21513 CASP-like protein 2B1 (AtCASPL2B1),CASP-like protein 2B2 (AtCASPL2B2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:505006479;,locus:2058744; AT4G16442,AT2G35760 CASP-like protein CASP-like protein Os03g0196400,CASP-like protein Q10QH3,A0A0P0VU61 CSPLL_ORYSJ,A0A0P0VU61_ORYSJ Os03g0196400 LOC_Os03g10030 OsJ_09768,Os03g0196400 OSNPB_030196400 ENOG411DW8Q MAP1A Q9SLN5,A0A1P8B297 MAP1A_ARATH,A0A1P8B297_ARATH Methionine aminopeptidase 1A (MAP 1A) (MetAP 1A) (EC 3.4.11.18) (Peptidase M 1A),Methionine aminopeptidase (EC 3.4.11.18) FUNCTION: Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000255|HAMAP-Rule:MF_03174}.,FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. R-ATH-2514859; 3.4.11.18 43992,36578 Methionine aminopeptidase 1A (MAP 1A) (MetAP 1A) (EC 3.4.11.18) (Peptidase M 1A),Methionine aminopeptidase (EC 3.4.11.18) cytoplasm [GO:0005737]; cytosol [GO:0005829]; aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloexopeptidase activity [GO:0008235]; N-terminal protein amino acid modification [GO:0031365]; protein processing [GO:0016485],aminopeptidase activity [GO:0004177]; metal ion binding [GO:0046872]; metalloexopeptidase activity [GO:0008235] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11060042}. locus:2050916; AT2G45240 Removes the N-terminal methionine from nascent proteins (By similarity) Methionine aminopeptidase (EC 3.4.11.18) Q337D3 Q337D3_ORYSJ LOC_Os10g36470 Os10g0508400 OSNPB_100508400 FUNCTION: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. ENOG411DW8P Q9M9G7 CAPZB_ARATH Probable F-actin-capping protein subunit beta (CapZ-beta) FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments (By similarity). {ECO:0000250}. R-ATH-983231; 28877 Probable F-actin-capping protein subunit beta (CapZ-beta) actin filament [GO:0005884]; cytoplasm [GO:0005737]; F-actin capping protein complex [GO:0008290]; actin filament binding [GO:0051015]; actin cytoskeleton organization [GO:0030036]; actin filament capping [GO:0051693]; actin filament organization [GO:0007015]; barbed-end actin filament capping [GO:0051016]; cell morphogenesis [GO:0000902]; response to heat [GO:0009408] locus:2013026; AT1G71790 F-actin-capping protein subunit F-actin capping protein beta subunit, putative, expressed (Os03g0381200 protein) (Putative capping protein beta subunit) (cDNA clone:006-211-G05, full insert sequence) (cDNA clone:006-301-F06, full insert sequence) Q75M66 Q75M66_ORYSJ LOC_Os03g26450 Os03g0381200 OsJ_11065 OSJNBa0011H24.19 OSNPB_030381200 ENOG411DW89 PDF1B Q9FUZ2 DEF1B_ARATH Peptide deformylase 1B, chloroplastic/mitochondrial (AtDEF2) (AtPDF1B) (PDF 1B) (EC 3.5.1.88) (Polypeptide deformylase) DISRUPTION PHENOTYPE: Albino. {ECO:0000269|PubMed:12505980}. Seedling lethal; Albino-T. Meinnel-2003 FUNCTION: Removes the formyl group from the N-terminal Met of newly synthesized proteins. Has a preferred substrate specificity towards the photosystem II (PS II) D1 polypeptide. {ECO:0000269|PubMed:11060042}. 3.5.1.88; 3.5.1.88 30610 Peptide deformylase 1B, chloroplastic/mitochondrial (AtDEF2) (AtPDF1B) (PDF 1B) (EC 3.5.1.88) (Polypeptide deformylase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; peptide deformylase activity [GO:0042586]; co-translational protein modification [GO:0043686]; N-terminal protein amino acid modification [GO:0031365]; peptidyl-methionine modification [GO:0018206]; translation [GO:0006412] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:11060042}. locus:2222667; AT5G14660 peptide deformylase Peptide deformylase 1B, chloroplastic (OsPDF1B) (PDF 1B) (EC 3.5.1.88),Peptide deformylase (EC 3.5.1.88) (Fragment) Q5VNN5,A0A0P0V5Q2 DEF1B_ORYSJ,A0A0P0V5Q2_ORYSJ PDF1B Os01g0637600 LOC_Os01g45070 OsJ_002667 OsJ_02762 P0004A09.6 P0696E01.27,Os01g0636600 OSNPB_010636600 DISRUPTION PHENOTYPE: Chlorina and retarded growth. {ECO:0000269|PubMed:18718933}. FUNCTION: Removes the formyl group from the N-terminal Met of newly synthesized proteins.,FUNCTION: Removes the formyl group from the N-terminal Met of newly synthesized proteins. {ECO:0000256|RuleBase:RU362111}. ENOG411DW88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon-like protein Reticulon-like protein Q0DJ95 Q0DJ95_ORYSJ Os05g0312500 Os05g0312500 OSNPB_050312500 ENOG411DW87 emb2746 Q84W56 Q84W56_ARATH RNA-metabolising metallo-beta-lactamase family protein (Uncharacterized protein At5g63420) Embryo defective; Globular-D. Meinke-2003 100554 RNA-metabolising metallo-beta-lactamase family protein (Uncharacterized protein At5g63420) chloroplast [GO:0009507]; auxin transport [GO:0060918]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; longitudinal axis specification [GO:0009942] locus:2167336; AT5G63420 ribonuclease J-like Os02g0539600 protein (Fragment) A0A0P0VK19 A0A0P0VK19_ORYSJ Os02g0539600 OSNPB_020539600 ENOG411DW86 Q29Q44,A0A1P8AYV6,A0A1P8AZ10,A0A1P8AYY3 Q29Q44_ARATH,A0A1P8AYV6_ARATH,A0A1P8AZ10_ARATH,A0A1P8AYY3_ARATH At2g04360 (Transmembrane protein),Transmembrane protein 36129,29996,41090,25216 At2g04360 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2058369; AT2G04360 NA Os08g0345400 protein (cDNA clone:J013009K02, full insert sequence) Q84QU2 Q84QU2_ORYSJ P0410E11.116 Os08g0345400 OsJ_26988 OSNPB_080345400 ENOG411DW84 SPL13B,SPL13A P0DI11,B9DI20 SP13B_ARATH,SP13A_ARATH Squamosa promoter-binding-like protein 13B,Squamosa promoter-binding-like protein 13A FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. 39108 Squamosa promoter-binding-like protein 13B,Squamosa promoter-binding-like protein 13A nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; anther development [GO:0048653]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. locus:2832472;,locus:2159717; AT5G50670,AT5G50570 Squamosa promoter-binding-like protein NA NA NA NA NA NA NA ENOG411DW83 Q94K06,A0A1P8AU79,A0A1P8AU61,A0A1P8AU92,F4I2Y2 Q94K06_ARATH,A0A1P8AU79_ARATH,A0A1P8AU61_ARATH,A0A1P8AU92_ARATH,F4I2Y2_ARATH Polynucleotide adenylyltransferase family protein (tRNA adenylyltransferase-like protein),Polynucleotide adenylyltransferase family protein ARA:AT1G22660-MONOMER; 68954,61962,69541,61375,68698 Polynucleotide adenylyltransferase family protein (tRNA adenylyltransferase-like protein),Polynucleotide adenylyltransferase family protein mitochondrion [GO:0005739]; nucleotidyltransferase activity [GO:0016779]; RNA binding [GO:0003723]; RNA processing [GO:0006396],nucleotidyltransferase activity [GO:0016779]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2199675; AT1G22660 tRNA nucleotidyltransferase Os12g0171200 protein (Fragment) A0A0P0Y7I6 A0A0P0Y7I6_ORYSJ Os12g0171200 OSNPB_120171200 ENOG411DW82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q8GS49 Q8GS49_ORYSJ OJ1112_E08.105 OJ1720_F04.118 Os07g0564100 OsJ_24753 OSNPB_070564100 ENOG411DW81 Q682E1,A0A1P8B2V6,A0A1P8B2R9 Q682E1_ARATH,A0A1P8B2V6_ARATH,A0A1P8B2R9_ARATH Mitochondrial ATP synthase D chain-related protein (Uncharacterized protein At2g38580),Mitochondrial ATP synthase D chain-related protein 54348,51893,38048 Mitochondrial ATP synthase D chain-related protein (Uncharacterized protein At2g38580),Mitochondrial ATP synthase D chain-related protein cytosol [GO:0005829] locus:2064168; AT2G38580 NA Expressed protein (Os03g0333000 protein) Q10LW2 Q10LW2_ORYSJ Os03g0333000 LOC_Os03g21520 Os03g0333000 OSNPB_030333000 ENOG411DW80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Nucleoid DNA-binding-like protein (Os01g0954900 protein) (cDNA clone:002-174-A08, full insert sequence) Q8RYK3 Q8RYK3_ORYSJ Os01g0954900 B1139B11.12 OSNPB_010954900 ENOG411E7SC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0250300 protein (cDNA clone:J013075B02, full insert sequence) (cDNA clone:J023149L07, full insert sequence),Os07g0250300 protein Q8GS79,A0A0P0X4F6 Q8GS79_ORYSJ,A0A0P0X4F6_ORYSJ OSJNBb0056I06.106-1 P0021G06.122-1 Os07g0250300 OsJ_23720 OSNPB_070250300,Os07g0250300 OSNPB_070250300 ENOG411E7SK LTPG3 Q9LE56 Q9LE56_ARATH At1g18280 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (F15H18.20) (Lipid transfer protein, putative) (Protease inhibitor/seed storage/lipid transfer protein family protein) (T10O22.25) 18073 At1g18280 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (F15H18.20) (Lipid transfer protein, putative) (Protease inhibitor/seed storage/lipid transfer protein family protein) (T10O22.25) anchored component of membrane [GO:0031225]; peptidase activity [GO:0008233] locus:2014074; AT1G18280 Protease inhibitor seed storage lipid transfer protein (LTP) family protein NA NA NA NA NA NA NA ENOG411E7SS Q8GYS0 Q8GYS0_ARATH Uncharacterized protein At5g19190 (Uncharacterized protein At5g19190/T24G5_90) 17708 Uncharacterized protein At5g19190 (Uncharacterized protein At5g19190/T24G5_90) locus:2182177; AT5G19190 NA NA NA NA NA NA NA NA ENOG411E7SR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine proteinase inhibitor Q10R32 Q10R32_ORYSJ Os03g0173100 LOC_Os03g07700 OsJ_09602 OSNPB_030173100 ENOG411E7ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0567100 protein) (cDNA clone:002-156-E04, full insert sequence) Q10I24 Q10I24_ORYSJ Os03g0567100 LOC_Os03g36960 Os03g0567100 OsJ_11475 OSNPB_030567100 ENOG411E7SV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0178600 protein (Fragment) Q0E3E6 Q0E3E6_ORYSJ Os02g0178600 Os02g0178600 OSNPB_020178600 ENOG411EJCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EJCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJCQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0245700 protein) (cDNA clone:002-132-B12, full insert sequence) Q2QV30 Q2QV30_ORYSJ Os12g0245700 LOC_Os12g14220 OsJ_35706 OSNPB_120245700 ENOG411EJCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HSPB (Heat shock 27kDa) associated protein 1 NA NA NA NA NA NA NA ENOG411EJCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: crinkler (CRN) family protein NA NA NA NA NA NA NA ENOG411EJCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJCC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED NA NA NA NA NA NA NA ENOG411EJCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411EJCN Q9LPJ9 Q9LPJ9_ARATH At1g32630 (F6N18.3) (FAM50A-like protein) (Uncharacterized protein At1g32630) 16010 At1g32630 (F6N18.3) (FAM50A-like protein) (Uncharacterized protein At1g32630) locus:2035559; AT1G32630 NA NA NA NA NA NA NA NA ENOG411EJCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EJC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0106650 protein,Os08g0429600 protein,Os08g0514300 protein A0A0P0WRH2,A0A0P0XFW9,A0A0P0XI09 A0A0P0WRH2_ORYSJ,A0A0P0XFW9_ORYSJ,A0A0P0XI09_ORYSJ Os06g0106650 OSNPB_060106650,Os08g0429600 OSNPB_080429600,Os08g0514300 OSNPB_080514300 ENOG411EJC5 CLE26 O04547 CLE26_ARATH CLAVATA3/ESR (CLE)-related protein 26 [Cleaved into: CLE26p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:16902140}. 13631 CLAVATA3/ESR (CLE)-related protein 26 [Cleaved into: CLE26p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] locus:2020683; AT1G69970 Inherit from euNOG: CLAVATA3 ESR (CLE)-related protein NA NA NA NA NA NA NA ENOG411EJC6 F4IR55 F4IR55_ARATH Zinc finger CCCH domain protein, putative (DUF3755) 24048 Zinc finger CCCH domain protein, putative (DUF3755) locus:2058188; AT2G43470 Protein of unknown function (DUF3755) NA NA NA NA NA NA NA ENOG411EJC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os07g0593500 protein,Os01g0568650 protein,Os01g0568500 protein,Os01g0568000 protein,Os10g0390300 protein,Os01g0568100 protein A3BLS4,A0A0P0V479,A0A0P0V489,A0A0P0V487,A0A0P0XUP0,A0A0P0V481 A3BLS4_ORYSJ,A0A0P0V479_ORYSJ,A0A0P0V489_ORYSJ,A0A0P0V487_ORYSJ,A0A0P0XUP0_ORYSJ,A0A0P0V481_ORYSJ Os07g0593500 OsJ_24969 OSNPB_070593500,Os01g0568650 OSNPB_010568650,Os01g0568500 OSNPB_010568500,Os01g0568000 OSNPB_010568000,Os10g0390300 OSNPB_100390300,Os01g0568100 OSNPB_010568100 ENOG411EJC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7S1 MAKR5 Q9FLX4,A0A1P8BH98 MAKR5_ARATH,A0A1P8BH98_ARATH Probable membrane-associated kinase regulator 5,Membrane-associated kinase regulator 36486,33019 Probable membrane-associated kinase regulator 5,Membrane-associated kinase regulator plasma membrane [GO:0005886],kinase activity [GO:0016301] locus:2176867; AT5G52870 membrane-associated kinase regulator NA NA NA NA NA NA NA ENOG411E7S3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquinol-cytochrome c reductase complex 6.7 kDa protein Os07g0680300 protein Q0D3L5 Q0D3L5_ORYSJ Os07g0680300 Os07g0680300 OsJ_25595 OSNPB_070680300 ENOG411E7S5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0417300 protein,Os12g0418200 protein A0A0P0Y9H8,A0A0P0Y9E3 A0A0P0Y9H8_ORYSJ,A0A0P0Y9E3_ORYSJ Os12g0417300 OSNPB_120417300,Os12g0418200 OSNPB_120418200 ENOG411E7S4 TIFY5A Q8LBM2 TIF5A_ARATH Protein TIFY 5A (Jasmonate ZIM domain-containing protein 8) FUNCTION: Repressor of jasmonate responses. Unable to associate strongly with COI1 in the presence of jasmonoyl-isoleucine (JA-Ile) and is therefore more resistant to JA-medisted-degradation than other TIFY/JAZ proteins. Repress gene expression through direct recruitment of the corepressor TOPLESS to cognate transcription factors. {ECO:0000269|PubMed:19151223, ECO:0000269|PubMed:22327740}. MISCELLANEOUS: TIFY5A/JAZ8-mediated repression does not require the tify domain, which, in other TIFY/JAZ proteins, recruits the corepressor TOPLESS through the adapter protein AFPH2/NINJA. {ECO:0000305|PubMed:22327740}. 14770 Protein TIFY 5A (Jasmonate ZIM domain-containing protein 8) nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:505006155; AT1G30135 TIFY 5A-like NA NA NA NA NA NA NA ENOG411E7S9 Q93Z58,A8MR19 Q93Z58_ARATH,A8MR19_ARATH At1g22140/F2E2_13 (Zinc finger CCCH domain protein),Zinc finger CCCH domain protein 8185,6984 At1g22140/F2E2_13 (Zinc finger CCCH domain protein),Zinc finger CCCH domain protein locus:2030596; AT1G22140 NA Os03g0385301 protein A0A0P0VY39 A0A0P0VY39_ORYSJ Os03g0385301 OSNPB_030385301 ENOG411E83R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3429) NA NA NA NA NA NA NA ENOG411E83S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0015K02.21 protein (OSJNBa0084K01.1 protein) (Os04g0661600 protein) (cDNA clone:001-110-G06, full insert sequence) (cDNA clone:J023049F07, full insert sequence) Q7XM30 Q7XM30_ORYSJ Os04g0661600 OsJ_16502 OSJNBa0015K02.21 OSJNBa0084K01.1 OSNPB_040661600 ENOG411E83P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E83V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0101300 protein Q69K27 Q69K27_ORYSJ Os09g0101300 OsJ_28333 OSJNBa0066B16.26 OSNPB_090101300 ENOG411E83T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E83U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0551400 protein A0A0P0V3Y2 A0A0P0V3Y2_ORYSJ Os01g0551400 OSNPB_010551400 ENOG411E66Q P1R1 Q9FJN6 Q9FJN6_ARATH At5g57780 (Emb|CAB79759.1) (Transcription factor) 19439 At5g57780 (Emb|CAB79759.1) (Transcription factor) locus:2174348; AT5G57780 NA Os06g0653200 protein,Os02g0178700 protein (cDNA clone:002-173-H03, full insert sequence) Q67WQ5,Q6ETM0 Q67WQ5_ORYSJ,Q6ETM0_ORYSJ Os06g0653200 OsJ_22197 OSJNBa0085J13.15 OSNPB_060653200,Os02g0178700 Os02g0178700 OSNPB_020178700 P0544B02.8 ENOG411E66T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411E66J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1313) Os08g0366200 protein,Os08g0366300 protein Q6ZAE1,B9G0L3 Q6ZAE1_ORYSJ,B9G0L3_ORYSJ Os08g0366200 Os08g0366200 OsJ_27078 OSNPB_080366200 P0410E02.4,Os08g0366300 OsJ_27079 OSNPB_080366300 ENOG411E66A Q9T0L5,A0A1P8B5Q0 Q9T0L5_ARATH,A0A1P8B5Q0_ARATH Calcium-binding EF-hand family protein (Uncharacterized protein AT4g13440),Calcium-binding EF-hand family protein 18234,22507 Calcium-binding EF-hand family protein (Uncharacterized protein AT4g13440),Calcium-binding EF-hand family protein calcium ion binding [GO:0005509] locus:2142125; AT4G13440 NA NA NA NA NA NA NA NA ENOG411EHGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E830 Q8S8K5,Q1G3H9,A0A1P8B6J2 Q8S8K5_ARATH,Q1G3H9_ARATH,A0A1P8B6J2_ARATH Uncharacterized protein At2g35736,Transmembrane protein 6392,6310,10145 Uncharacterized protein At2g35736,Transmembrane protein integral component of membrane [GO:0016021] locus:505006298;,locus:4010713907; AT2G35736,AT4G25225 NA NA NA NA NA NA NA NA ENOG411E831 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E834 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0596700 protein B9F9K2 B9F9K2_ORYSJ Os03g0596700 OsJ_11634 OSNPB_030596700 ENOG411E7F5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: USO1 vesicle docking protein homolog (yeast) NA NA NA NA NA NA NA ENOG411EJW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Guanine deaminase NA NA NA NA NA NA NA ENOG411EJW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3128) NA NA NA NA NA NA NA ENOG411EJWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: mitochondrial import inner membrane translocase subunit TIM17 NA NA NA NA NA NA NA ENOG411EI1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B_lectin NA NA NA NA NA NA NA ENOG411EI1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0203600 protein Q7XB72 Q7XB72_ORYSJ Os07g0203600 OsJ_23487 OSJNBa0081K20.29 OSNPB_070203600 P0431A02.15 ENOG411EI1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0387000 protein A0A0P0W9S3 A0A0P0W9S3_ORYSJ Os04g0387000 OSNPB_040387000 ENOG411EI1Q CLE17 Q8L9H6 CLE17_ARATH CLAVATA3/ESR (CLE)-related protein 17 [Cleaved into: CLE17p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16902140}. 11365 CLAVATA3/ESR (CLE)-related protein 17 [Cleaved into: CLE17p] extracellular space [GO:0005615]; cell-cell signaling involved in cell fate commitment [GO:0045168]; system development [GO:0048731] TISSUE SPECIFICITY: Mostly expressed in seedlings, roots, flowers, stems and apex, and, to a lower extent, in leaves and siliques. {ECO:0000269|PubMed:12602871}. locus:505006216; AT1G70895 NA NA NA NA NA NA NA NA ENOG411EI1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0472501 protein A0A0N7KRX9 A0A0N7KRX9_ORYSJ Os10g0472501 OSNPB_100472501 ENOG411EI1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1R F7P12.1 O64724,Q1G3F8,Q9C8P1,Q9S9V5,A0A1P8AYU2,Q3E713,F4JA50,Q3E9D7,Q3EAA8,F4ICS7 O64724_ARATH,Q1G3F8_ARATH,Q9C8P1_ARATH,Q9S9V5_ARATH,A0A1P8AYU2_ARATH,Q3E713_ARATH,F4JA50_ARATH,Q3E9D7_ARATH,Q3EAA8_ARATH,F4ICS7_ARATH Putative non-LTR retroelement reverse transcriptase (RNA-directed DNA polymerase (Reverse transcriptase)-related family protein),RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,Transmembrane protein,AT4g04650 protein (RNA-directed DNA polymerase (Reverse transcriptase)-related family protein) (T19J18.5 protein),Reverse transcriptase zinc-binding protein,Non-LTR retrolelement reverse transcriptase 24955,23548,17749,37938,33505,17078,17662,33919,16008,36715 Putative non-LTR retroelement reverse transcriptase (RNA-directed DNA polymerase (Reverse transcriptase)-related family protein),RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,Transmembrane protein,AT4g04650 protein (RNA-directed DNA polymerase (Reverse transcriptase)-related family protein) (T19J18.5 protein),Reverse transcriptase zinc-binding protein,Non-LTR retrolelement reverse transcriptase RNA-directed DNA polymerase activity [GO:0003964],integral component of membrane [GO:0016021],stromule [GO:0010319]; RNA-directed DNA polymerase activity [GO:0003964]; response to cold [GO:0009409],integral component of membrane [GO:0016021]; RNA-directed DNA polymerase activity [GO:0003964] locus:2065320;,locus:1009023454;,locus:2036320;,locus:2135059;,locus:504954824;,locus:504955778;,locus:2144940;,locus:504955574;,locus:2031118; AT2G02520,AT5G16486,AT1G34440,AT4G04650,AT5G28615,AT3G25727,AT5G18880,AT4G05095,AT1G43730 RNA-directed DNA polymerase (Reverse transcriptase)-related family protein NA NA NA NA NA NA NA ENOG411EI1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1X Q6DBB8,A0A1P8ANR6 Q6DBB8_ARATH,A0A1P8ANR6_ARATH At1g65510 (Transmembrane protein),Transmembrane protein 8553,10665 At1g65510 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2034121; AT1G65510 NA NA NA NA NA NA NA NA ENOG411EI1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0635150 protein A0A0P0X950 A0A0P0X950_ORYSJ Os07g0635150 OSNPB_070635150 ENOG411EI1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0515100 protein,Os10g0516000 protein (Fragment),Os10g0514550 protein Q0IWE4,A0A0P0XWI5,A0A0P0XW62 Q0IWE4_ORYSJ,A0A0P0XWI5_ORYSJ,A0A0P0XW62_ORYSJ Os10g0515100 OSNPB_100515100,Os10g0516000 OSNPB_100516000,Os10g0514550 OSNPB_100514550 ENOG411EI1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PIH1 domain containing NA NA NA NA NA NA NA ENOG411EI1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HTH_LUXR NA NA NA NA NA NA NA ENOG411EI1B Q8GWP9 Q8GWP9_ARATH Transmembrane protein (Uncharacterized protein At5g57887) 9195 Transmembrane protein (Uncharacterized protein At5g57887) integral component of membrane [GO:0016021] locus:504954863; AT5G57887 NA NA NA NA NA NA NA NA ENOG411EI1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0362150 protein,Os05g0281950 protein,Os11g0123100 protein A0A0N7KM35,A0A0N7KKG4,A0A0P0XYS5 A0A0N7KM35_ORYSJ,A0A0N7KKG4_ORYSJ,A0A0P0XYS5_ORYSJ Os06g0362150 OSNPB_060362150,Os05g0281950 OSNPB_050281950,Os11g0123100 OSNPB_110123100 ENOG411EI10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DPNM PHYLLO Q15KI9,A0A1P8ATL1 PHYLO_ARATH,A0A1P8ATL1_ARATH Protein PHYLLO, chloroplastic [Includes: Inactive isochorismate synthase (MENF); 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC 2.2.1.9) (MEND); o-succinylbenzoate synthase (EC 4.2.1.113) (MENC); 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) (MENH)],2-oxoglutarate decarboxylase/hydro-lyase/magnesium ion-binding protein DISRUPTION PHENOTYPE: High chlorophyll fluorescence and lack of phylloquinone. {ECO:0000269|PubMed:16617180}. Defective in phylloquinone biosynthesis.,Exhibits 5-15% of wild-type photosystem I (PSI) activity whereas that of photosystem II (PSII) is only reduced to about 75% of wild-type levels.,High chlorophyll fluorescence (hcf) phenotype associated with photosynthetic lesion.,Levels of chlorophyll are 41% of wild-type levels. When grown in the presence of the metabolic precursor 14-dihydroxy-2-naphtoate (NA) mutant plants exhibit wild-type levels of chlorophyll.,Mutant plants fail to quench the fluorescence efficiently upon illumination indicating that the limiting step of the linear electron transport lies behind PSII.,Reduced PSI stability.,Pale green plants,Seedling lethal. Pale green seedlings; High chlorophyll fluorescence-J. Meurer-2006 FUNCTION: Multifunctional enzyme required for phylloquinone (vitamin K1) biosynthesis. {ECO:0000269|PubMed:16617180}. MISCELLANEOUS: Consists of a fusion of four bacterial genes, menF, menD, menC and menH belonging to the same operon. In higher plants, the C-terminal chorismate binding domain is absent from the isochorismate synthase (MenF) module, leading to a non-functional module. The isochorismate synthase activity has been taken over by ISC1 and ICS2. In green and red algae lineages, this module has maintained its structural integrity and is functional (PubMed:16617180). {ECO:0000305|PubMed:16617180}. ARA:AT1G68890-MONOMER; Biosynthesis of secondary metabolites (01110),Ubiquinone and other terpenoid-quinone biosynthesis (00130),Metabolic pathways (01100),Biosynthesis of siderophore group nonribosomal peptides (01053) 2.2.1.9; 4.2.1.113; 4.2.99.20 190182,151397 Protein PHYLLO, chloroplastic [Includes: Inactive isochorismate synthase (MENF); 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC 2.2.1.9) (MEND); o-succinylbenzoate synthase (EC 4.2.1.113) (MENC); 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) (MENH)],2-oxoglutarate decarboxylase/hydro-lyase/magnesium ion-binding protein chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity [GO:0070204]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity [GO:0070205]; metal ion binding [GO:0046872]; thiamine pyrophosphate binding [GO:0030976]; cellular amino acid catabolic process [GO:0009063]; menaquinone biosynthetic process [GO:0009234]; photosystem I stabilization [GO:0042550]; phylloquinone biosynthetic process [GO:0042372],2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity [GO:0070204]; lyase activity [GO:0016829]; thiamine pyrophosphate binding [GO:0030976]; cellular amino acid catabolic process [GO:0009063]; menaquinone biosynthetic process [GO:0009234] locus:2205450; AT1G68890 2-oxoglutarate decarboxylase hydro-lyase magnesium ion binding Os02g0581500 protein (Fragment),Os02g0581400 protein A0A0P0VKU6,A0A0P0VL09,A0A0P0VKV6 A0A0P0VKU6_ORYSJ,A0A0P0VL09_ORYSJ,A0A0P0VKV6_ORYSJ Os02g0581500 OSNPB_020581500,Os02g0581400 OSNPB_020581400 ENOG411E3R6 Q8VY58,A0A1P8BA22 Q8VY58_ARATH,A0A1P8BA22_ARATH Serine/threonine-protein phosphatase 4 regulatory subunit-like protein (Uncharacterized protein At5g17070),Serine/threonine-protein phosphatase 4 regulatory subunit-like protein 30297,26556 Serine/threonine-protein phosphatase 4 regulatory subunit-like protein (Uncharacterized protein At5g17070),Serine/threonine-protein phosphatase 4 regulatory subunit-like protein protein phosphatase 4 complex [GO:0030289]; protein phosphatase regulator activity [GO:0019888] locus:2148161; AT5G17070 PPP4R2 Os06g0300700 protein (cDNA clone:J023091P20, full insert sequence) Q5ZA33 Q5ZA33_ORYSJ Os06g0300700 Os06g0300700 OsJ_21071 OSNPB_060300700 P0501G08.37 ENOG411E3R7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA early light-induced protein Os07g0178700 protein (Putative low molecular mass early light-induced protein,chloroplast (ELIP)),Os07g0178800 protein Q69W91,Q0D879 Q69W91_ORYSJ,Q0D879_ORYSJ OJ1361_E02.117 Os07g0178700 OsJ_23311 OSNPB_070178700,Os07g0178800 Os07g0178800 OSNPB_070178800 ENOG411E3R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAT/LH2 domain OSJNBa0006M15.18 protein (OSJNBa0036B21.1 protein) (Os04g0456200 protein),Os04g0456300 protein,Os03g0594600 protein (Fragment),Os02g0547300 protein (Fragment),Os06g0206401 protein (Fragment) Q7XRE9,A0A0P0WAW3,A0A0P0VZU9,A0A0P0VK97,A0A0P0WTR3 Q7XRE9_ORYSJ,A0A0P0WAW3_ORYSJ,A0A0P0VZU9_ORYSJ,A0A0P0VK97_ORYSJ,A0A0P0WTR3_ORYSJ Os04g0456200 Os04g0456200 OSJNBa0006M15.18 OSJNBa0036B21.1 OSNPB_040456200,Os04g0456300 OSNPB_040456300,Os03g0594600 OSNPB_030594600,Os02g0547300 OSNPB_020547300,Os06g0206401 OSNPB_060206401 ENOG411E3R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: e3 ubiquitin-protein ligase E3 ubiquitin-protein ligase (EC 2.3.2.27),Os01g0123500 protein A0A0P0UXX3,A0A0P0UXE9 A0A0P0UXX3_ORYSJ,A0A0P0UXE9_ORYSJ Os01g0123700 OSNPB_010123700,Os01g0123500 OSNPB_010123500 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411E3R2 RPL30A,RPL30C,RPL30B Q9C8F7,Q9LSA3,Q8VZ19 RL301_ARATH,RL303_ARATH,RL302_ARATH Putative 60S ribosomal protein L30-1,60S ribosomal protein L30-3,60S ribosomal protein L30-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 12317,12279,12290 Putative 60S ribosomal protein L30-1,60S ribosomal protein L30-3,60S ribosomal protein L30-2 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; response to fungus [GO:0009620]; ribosome assembly [GO:0042255],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256] locus:2013205;,locus:2093984;,locus:2029401; AT1G36240,AT3G18740,AT1G77940 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NA NA NA NA NA NA NA ENOG411E3R3 FH Q9ZR07 FRDA_ARATH Frataxin, mitochondrial (Fxn) (EC 1.16.3.1) retarded growth. deficiency in plant fructification (reduced fresh weight of fruits and reduced number of seeds per fruit). Embryo defective; Preglobular-D. Gomez-Casati-2007 FUNCTION: Promotes the biosynthesis of heme as well as the assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways (PubMed:17092311). May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+) (PubMed:17092311). May be able to store large amounts of the metal in the form of a ferrihydrite mineral by oligomerization (PubMed:17092311). Binds to the mitochondrial cysteine desulfurase NIFS1 and increases its activity (PubMed:22511606). {ECO:0000269|PubMed:17092311, ECO:0000269|PubMed:22511606}. ARA:AT4G03240-MONOMER; R-ATH-1362409; 1.16.3.1 21430 Frataxin, mitochondrial (Fxn) (EC 1.16.3.1) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; 2 iron, 2 sulfur cluster binding [GO:0051537]; ferric iron binding [GO:0008199]; ferrous iron binding [GO:0008198]; ferroxidase activity [GO:0004322]; iron chaperone activity [GO:0034986]; aerobic respiration [GO:0009060]; cellular iron ion homeostasis [GO:0006879]; cellular response to oxidative stress [GO:0034599]; heme biosynthetic process [GO:0006783]; ion transport [GO:0006811]; iron incorporation into metallo-sulfur cluster [GO:0018283]; mitochondrion organization [GO:0007005]; regulation of iron-sulfur cluster assembly [GO:1903329]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979] locus:2125477; AT4G03240 frataxin Os01g0783600 protein (Putative frataxin) (cDNA, clone: J053063D20, full insert sequence) Q5ZAV6 Q5ZAV6_ORYSJ Os01g0783600 B1100D10.41 OsJ_03697 OSNPB_010783600 ENOG411E3R0 P29525 OLEO1_ARATH Oleosin 18.5 kDa During walking stick stage aberrant embryo cells contained unusually large oilbodies not observed in WT seeds. Large oilbodies in some cases had 5 micrometers in diameter. Changes in the size of oilbodies caused disruption of storage organelles altering accumulation of lipids and proteins and causing delay in germination.,ole1 seeds have much larger oil bodies than wild-type. OLE1 deficiency leads to loss of freezing tolerance of Arabidopsis seeds. Treating ole1 seeds with freezing (at -30°C for 1 day) inhibits and delays their germination although ole1 seeds without freezing treatment germinate normally. Seed oil bodies of ole1 ole2 and ole1 ole3 double mutants are much larger than ole1 mutant. ole1 ole2 and ole1 ole3 seeds hardly germinate. ole1 ole2 and ole1 ole3 double mutants seeds do not germinate when treated with freezing condition (at -30°C for 1 day).,Oil bodies of ole1 ole2 double mutant are much larger than ole1 and ole2 single mutants. ole1 ole2 seeds hardly germinate. None of them that are treated with freezing (at -30°C for 1 day) germinate.,Oil bodies of ole1 ole3 double mutant are much larger than ole1 and ole3 single mutants. ole1 ole3 seeds hardly germinate. None of them that are treated with freezing (at -30°C for 1 day) germinate. Germination sensitive to freezing; Large oil bodies-I. Hara-Nishimura-2008 FUNCTION: May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. 18569 Oleosin 18.5 kDa extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915]; response to freezing [GO:0050826]; seed germination [GO:0009845]; seed oilbody biogenesis [GO:0010344]; sexual reproduction [GO:0019953] locus:2117328; AT4G25140 May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth Oleosin 16 kDa (OSE701) Q42980 OLEO1_ORYSJ OLE16 1CP OSE375 Os04g0546500 LOC_Os04g46200 OsJ_15670 OSJNBa0079A21.14 FUNCTION: May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. ENOG411E3R1 CDC25 Q8GY31,A0A1P8BFF8 CDC25_ARATH,A0A1P8BFF8_ARATH Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath;CDC25) (Arsenate reductase) (AtASR) (Arsenate reductase 2) (EC 1.20.4.1) (Sulfurtransferase 5) (AtStr5),Rhodanese/Cell cycle control phosphatase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants show reduced root size when grown in presence of hydroxyurea (PubMed:20647223). No visible phenotype, but decreased accumulation of total arsenic in shoots (PubMed:16507083). No effect on arsenate sensitivity (PubMed:25099865). No effect on the accumulation of arsenate in roots, efflux of arsenite or uptake of arsenate, or the total arsenic accumulation in shoots (PubMed:22879969, PubMed:25464340). {ECO:0000269|PubMed:16507083, ECO:0000269|PubMed:20647223, ECO:0000269|PubMed:22879969, ECO:0000269|PubMed:25099865, ECO:0000269|PubMed:25464340}. Sensitive to hydroxyurea (inhibitor of DNA replication)-D. Francis-2011 FUNCTION: Tyrosine protein phosphatase that dephosphorylates CDK complex and activate its kinase activity in vitro. {ECO:0000269|PubMed:15329414, ECO:0000269|PubMed:16766666}.; FUNCTION: Arsenate reductase that plays a major role in the reduction of arsenate to arsenite and arsenic retention in roots (PubMed:16567632). Has an in vitro and in vivo arsenate reductase activity (PubMed:16507083, PubMed:16766666, PubMed:22562211). Plays no role in arsenic metabolism (PubMed:22879969, PubMed:25464340). {ECO:0000269|PubMed:16507083, ECO:0000269|PubMed:16567632, ECO:0000269|PubMed:16766666, ECO:0000269|PubMed:22879969, ECO:0000269|PubMed:25464340}. MISCELLANEOUS: Binds 1 zinc ion which is not required for enzyme activity (PubMed:15329414). Plants silencing ACR2 show increased sensitivity to arsenate but not arsenite (PubMed:16567632). {ECO:0000305|PubMed:15329414, ECO:0000305|PubMed:16567632}. ARA:AT5G03455-MONOMER; 3.1.3.48; 1.20.4.1 16450,12384 Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath;CDC25) (Arsenate reductase) (AtASR) (Arsenate reductase 2) (EC 1.20.4.1) (Sulfurtransferase 5) (AtStr5),Rhodanese/Cell cycle control phosphatase superfamily protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; arsenate reductase (glutaredoxin) activity [GO:0008794]; metal ion binding [GO:0046872]; protein tyrosine phosphatase activity [GO:0004725]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein phosphorylation [GO:0006468]; response to arsenic-containing substance [GO:0046685] TISSUE SPECIFICITY: Expressed in roots and at lower levels in shoots (at protein level). Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:15720653, ECO:0000269|PubMed:16567632, ECO:0000269|PubMed:22879969}. locus:505006579; AT5G03455 Rhodanese-like domain NA NA NA NA NA NA NA ENOG411E3R8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0495200 protein (cDNA clone:J033116D04, full insert sequence),Os09g0494800 protein (Fragment) Q0J0K6,A0A0P0XNY5 Q0J0K6_ORYSJ,A0A0P0XNY5_ORYSJ Os09g0495200 Os09g0495200 OSNPB_090495200,Os09g0494800 OSNPB_090494800 ENOG411E3R9 ACD32.1 Q208N7 Q208N7_ARATH Alpha-crystallin domain 32.1 (At1g06460) (Peroxisomal small heat shock protein Acd31.2) 31222 Alpha-crystallin domain 32.1 (At1g06460) (Peroxisomal small heat shock protein Acd31.2) peroxisome [GO:0005777] locus:2009205; AT1G06460 Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411E3RF F4IBV6,Q8W461 F4IBV6_ARATH,Q8W461_ARATH Uncharacterized protein,Uncharacterized protein At1g78810 (Uncharacterized protein At1g78810; F9K20.15) 54071,54214 Uncharacterized protein,Uncharacterized protein At1g78810 (Uncharacterized protein At1g78810; F9K20.15) locus:2037598; AT1G78810 NA Os06g0153600 protein (cDNA clone:002-145-D09, full insert sequence) Q5VMN5 Q5VMN5_ORYSJ Os06g0153600 OSJNBa0085L11.3-1 OSNPB_060153600 ENOG411E3RG CYTB5-B,CB5-B O48845,A0A1P8AX49 CYB5B_ARATH,A0A1P8AX49_ARATH Cytochrome b5 isoform B (AtCb5-B) (Cytochrome b5 isoform 2) (Cytochrome b5 isoform E) (AtCb5-E),Cytochrome B5 isoform B FUNCTION: Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases, including fatty acid desaturases. {ECO:0000269|PubMed:22384013}. 15016,15065 Cytochrome b5 isoform B (AtCb5-B) (Cytochrome b5 isoform 2) (Cytochrome b5 isoform E) (AtCb5-E),Cytochrome B5 isoform B endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; alkane biosynthetic process [GO:0043447]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; metal ion binding [GO:0046872] locus:2046417; AT2G32720 cytochrome Cytochrome b5,Os01g0971500 protein (Putative cytochrome b5) (cDNA clone:J023022G15, full insert sequence) P49100,Q94DH6 CYB5_ORYSJ,Q94DH6_ORYSJ Os05g0108800 LOC_Os05g01820 OsJ_16839 OSJNBa0068N01.16,Os01g0971500 Os01g0971500 OsJ_04923 OSNPB_010971500 P0518C01.12 FUNCTION: Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases. {ECO:0000250}. ENOG411E3RD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E3RE COR413IM2,COR413IM1 F4I1G5,Q94AL8 CRIM2_ARATH,CRIM1_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic (AtCOR413-IM2) (Cold-regulated 413 thylakoid membrane 2) (AtCOR413-TM2),Cold-regulated 413 inner membrane protein 1, chloroplastic (AtCOR413-IM1) (Cold-regulated 413 thylakoid membrane 1) (AtCOR413-TM1) 24798,24354 Cold-regulated 413 inner membrane protein 2, chloroplastic (AtCOR413-IM2) (Cold-regulated 413 thylakoid membrane 2) (AtCOR413-TM2),Cold-regulated 413 inner membrane protein 1, chloroplastic (AtCOR413-IM1) (Cold-regulated 413 thylakoid membrane 1) (AtCOR413-TM1) chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of chloroplast inner membrane [GO:0031357]; cellular response to cold [GO:0070417]; cold acclimation [GO:0009631],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of chloroplast inner membrane [GO:0031357]; cellular response to cold [GO:0070417]; cellular response to water deprivation [GO:0042631]; cold acclimation [GO:0009631]; response to abscisic acid [GO:0009737] locus:2013743;,locus:505006154; AT1G29390,AT1G29395 cellular response to cold Cold acclimation protein COR413-TM1 (Os05g0566800 protein) (cDNA clone:J013039F24, full insert sequence) Q688W8 Q688W8_ORYSJ Os05g0566800 Os05g0566800 OJ1781_H11.9 OSNPB_050566800 ENOG411E3RB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CASP-like protein CASP-like protein 4B2 (OsCASPL4B2) Q10MR5 CSPLN_ORYSJ Os03g0298300 LOC_Os03g18680 ENOG411E3RC MPL12.1 Q9FL37 Q9FL37_ARATH At5g46230 16172 At5g46230 locus:2170463; AT5G46230 DUF538 domain containing protein Os01g0210600 protein (cDNA clone:002-172-F06, full insert sequence) Q9LE07 Q9LE07_ORYSJ Os01g0210600 OSNPB_010210600 P0031E09.14 P0466B10.24 ENOG411E3RA DJC72 Q8L763 Q8L763_ARATH Chaperone DnaJ-domain superfamily protein 30734 Chaperone DnaJ-domain superfamily protein chloroplast [GO:0009507] locus:504955938; AT2G18465 DnaJ domain OSJNBa0070M12.14 protein (Os04g0687300 protein) Q7XTL5 Q7XTL5_ORYSJ Os04g0687300 OsJ_16711 OSJNBa0070M12.14 OSNPB_040687300 ENOG411E3RN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein phosphatase inhibitor 2 (IPP-2) Os02g0602300 protein (cDNA clone:J013033D17, full insert sequence) Q6K5F6 Q6K5F6_ORYSJ Os02g0602300 Os02g0602300 OJ1669_F01.10 OJ1791_B03.48 OSNPB_020602300 ENOG411E3RM Q9FXG0,F4I354,F4I355 Q9FXG0_ARATH,F4I354_ARATH,F4I355_ARATH At1g29850/F1N18_19 (Double-stranded DNA-binding family protein) (F1N18.11 protein) (Putative apoptosis-related protein 19) (Uncharacterized protein At1g29850),Double-stranded DNA-binding family protein 14975,15753,15103 At1g29850/F1N18_19 (Double-stranded DNA-binding family protein) (F1N18.11 protein) (Putative apoptosis-related protein 19) (Uncharacterized protein At1g29850),Double-stranded DNA-binding family protein DNA binding [GO:0003677],cytosol [GO:0005829]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; DNA repair [GO:0006281]; programmed cell death [GO:0012501] locus:2019377; AT1G29850 programmed cell death protein Cell death-related protein (Os05g0547850 protein) (cDNA clone:001-014-C06, full insert sequence) (cDNA clone:J033147B11, full insert sequence),Os05g0546500 protein (Putative apoptosis-related protein) Q6ITC5,Q6L5A4 Q6ITC5_ORYSJ,Q6L5A4_ORYSJ A2 Os05g0547850 OsJ_17407 OSJNOa0014E02.2 OSNPB_050547850,Os05g0546500 Os05g0546500 OJ1345_B12.10 OSNPB_050546500 ENOG411E3RJ NRPB11 Q38859,F4J5R0 NRPBB_ARATH,F4J5R0_ARATH DNA-directed RNA polymerases II, IV and V subunit 11 (DNA-directed RNA polymerase II 13.6 kDa polypeptide) (DNA-directed RNA polymerase II subunit J) (DNA-directed RNA polymerase II subunit RPB11) (RNA polymerase II subunit B11),DNA-directed RNA polymerase, RBP11-like protein FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB11 is part of the core element with the central large cleft. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 13563,17144 DNA-directed RNA polymerases II, IV and V subunit 11 (DNA-directed RNA polymerase II 13.6 kDa polypeptide) (DNA-directed RNA polymerase II subunit J) (DNA-directed RNA polymerase II subunit RPB11) (RNA polymerase II subunit B11),DNA-directed RNA polymerase, RBP11-like protein DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription, DNA-templated [GO:0006351] locus:2083840; AT3G52090 DNA-directed RNA Polymerase II Os07g0172500 protein (Putative DNA-directed RNA polymerase II 13.6K chain) (cDNA clone:J013053F13, full insert sequence) Q6ZA50 Q6ZA50_ORYSJ Os07g0172500 OSNPB_070172500 P0496D04.29 ENOG411E3RK PQL3 Q2V4B2 PQL3_ARATH PsbQ-like protein 3, chloroplastic DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:20430763}. Mutant plant Does Not show the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness. Decreased post-illumination chlorophyll fluorescence-F. Sato-2010 FUNCTION: Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex. {ECO:0000269|PubMed:20430763}. 21534 PsbQ-like protein 3, chloroplastic chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; photosynthetic electron transport chain [GO:0009767]; response to cold [GO:0009409] locus:1009023157; AT2G01918 oxygen-evolving enhancer protein OSJNBb0065J09.4 protein (Os04g0523000 protein) Q7XKG5 Q7XKG5_ORYSJ Os04g0523000 OSJNBb0065J09.4 OSNPB_040523000 ENOG411E3RH Q6NQD5,Q9FRR0 Q6NQD5_ARATH,Q9FRR0_ARATH At5g28690 (Carboxylate clamp-TPR protein (DUF1685)) (Uncharacterized protein At5g28690),1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) (F22O13.28) Double mutant pollen tubes cease their growth and burst in vitro and fail to reach the female gametophytes in vivo. 21211,20879 At5g28690 (Carboxylate clamp-TPR protein (DUF1685)) (Uncharacterized protein At5g28690),1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) (F22O13.28) locus:2148835;,locus:2025530; AT5G28690,AT1G08790 Protein of unknown function (DUF1685) NA NA NA NA NA NA NA ENOG411E3RI DPBF2 Q8RYD6 AI5L1_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 1 (Dc3 promoter-binding factor 2) (AtDPBF2) (bZIP transcription factor 67) (AtbZIP67) FUNCTION: Could participate in abscisic acid-regulated gene expression during seed development. {ECO:0000250}. 37665 ABSCISIC ACID-INSENSITIVE 5-like protein 1 (Dc3 promoter-binding factor 2) (AtDPBF2) (bZIP transcription factor 67) (AtbZIP67) nucleus [GO:0005634]; activating transcription factor binding [GO:0033613]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. locus:2076018; AT3G44460 ABSCISIC ACID-INSENSITIVE 5-like NA NA NA NA NA NA NA ENOG411E3RV AGL80 Q9FJK3,Q3E8Z9 AGL80_ARATH,Q3E8Z9_ARATH Agamous-like MADS-box protein AGL80,At5g27810 (MADS-box transcription factor family protein) Complete female gametophyte defective-G. Drews-2006 FUNCTION: Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. MISCELLANEOUS: Plants lacking AGL80 (mutant fem111) have defects in central cell and endosperm development. 36825,13849 Agamous-like MADS-box protein AGL80,At5g27810 (MADS-box transcription factor family protein) nucleus [GO:0005634]; polar nucleus [GO:0043078]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944] TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. locus:2152511;,locus:2180300; AT5G48670,AT5G27810 MADS-box protein Os11g0229900 protein,OSJNBa0087H01.5 protein (Os04g0313400 protein),OSJNBa0054D14.7 protein (Os04g0324900 protein),Os01g0288100 protein A3C9X9,Q7XW18,Q7XKL9,A0A0P0V1U1 A3C9X9_ORYSJ,Q7XW18_ORYSJ,Q7XKL9_ORYSJ,A0A0P0V1U1_ORYSJ Os11g0229900 OsJ_33442 OSNPB_110229900,Os04g0313400 OsJ_14245 OSJNBa0087H01.5 OSNPB_040313400,Os04g0324900 OsJ_14250 OSJNBa0054D14.7 OSNPB_040324900,Os01g0288100 OSNPB_010288100 ENOG411E3RW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os12g0102300 protein (Fragment) A0A0P0Y5T4 A0A0P0Y5T4_ORYSJ Os12g0102300 OSNPB_120102300 ENOG411E3RT Q9LRX5 Q9LRX5_ARATH Homeodomain-like superfamily protein (Uncharacterized protein At3g24860) (Uncharacterized protein At3g24860/K7P8_14) 35191 Homeodomain-like superfamily protein (Uncharacterized protein At3g24860) (Uncharacterized protein At3g24860/K7P8_14) DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2087288; AT3G24860 Inherit from KOG: Transcription factor Os08g0484700 protein (Proline-rich protein family-like) Q6YTS9 Q6YTS9_ORYSJ Os08g0484700 OSNPB_080484700 P0419H09.21 ENOG411E3RU PSB27-1 Q9LR64 PB27A_ARATH Photosystem II repair protein PSB27-H1, chloroplastic (Psb27-H1) (Thylakoid lumenal protein PSB27-H1) DISRUPTION PHENOTYPE: Plants grow slightly slower and are slightly smaller than wild-type. Somewhat photoinhibited, in strong light the amount of D1 (psbA) protein decreased faster than wild-type and thus levels of PSII are decreased. {ECO:0000269|PubMed:16897475}. FUNCTION: Probably involved in repair of photodamaged photosystem II (PSII). {ECO:0000269|PubMed:16897475}. 18835 Photosystem II repair protein PSB27-H1, chloroplastic (Psb27-H1) (Thylakoid lumenal protein PSB27-H1) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; cellular response to light intensity [GO:0071484]; photosystem II assembly [GO:0010207]; photosystem II repair [GO:0010206] locus:2020788; AT1G03600 Photosystem II Os03g0333400 protein (Possible Photosystem II reaction center Psb27 protein, putative, expressed) Q10LV7 Q10LV7_ORYSJ LOC_Os03g21560 Os03g0333400 OsJ_10733 OSNPB_030333400 ENOG411E3RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3RS Q9LW61,F4J420 Q9LW61_ARATH,F4J420_ARATH ENTH/VHS family protein 31925,31794 ENTH/VHS family protein locus:2090945; AT3G23350 ENTH domain Os08g0567100 protein (Fragment) A0A0P0XIN3 A0A0P0XIN3_ORYSJ Os08g0567100 OSNPB_080567100 ENOG411E3RP O49695 O49695_ARATH Phospholipid hydroperoxide glutathione peroxidase (Uncharacterized protein AT4g17960) 17226 Phospholipid hydroperoxide glutathione peroxidase (Uncharacterized protein AT4g17960) peroxidase activity [GO:0004601] locus:2141050; AT4G17960 NA Os02g0128100 protein B9F290 B9F290_ORYSJ Os02g0128100 OsJ_05224 OSNPB_020128100 ENOG411E3RQ MUL3.12 Q9LU69,F4KAK0 Q9LU69_ARATH,F4KAK0_ARATH At5g57170 (Light-inducible protein ATLS1-like) (Putative light-inducible protein ATLS1) (Tautomerase/MIF superfamily protein),Tautomerase/MIF superfamily protein R-ATH-6798695; 12324,12347 At5g57170 (Light-inducible protein ATLS1-like) (Putative light-inducible protein ATLS1) (Tautomerase/MIF superfamily protein),Tautomerase/MIF superfamily protein chloroplast [GO:0009507] locus:2175554; AT5G57170 macrophage migration inhibitory factor Os06g0699500 protein (Putative light-inducible protein ATLS1) (cDNA clone:001-044-A11, full insert sequence) (cDNA clone:J013022N16, full insert sequence) Q5Z858 Q5Z858_ORYSJ Os06g0699500 OsJ_22521 OSNPB_060699500 P0468G03.12 ENOG411E3RZ ; ; ; ; ; ; ; P59259,A8MRV1 H4_ARATH,A8MRV1_ARATH Histone H4 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.,FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. {ECO:0000256|RuleBase:RU000528, ECO:0000256|SAAS:SAAS00581158}. R-ATH-212300;R-ATH-2299718;R-ATH-2559580;R-ATH-2559582;R-ATH-3214842;R-ATH-3214847;R-ATH-3214858;R-ATH-5578749;R-ATH-5693565; 11409,9394 Histone H4 chloroplast [GO:0009507]; cytosol [GO:0005829]; nuclear nucleosome [GO:0000788]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; DNA binding [GO:0003677]; histone binding [GO:0042393]; protein heterodimerization activity [GO:0046982]; nucleosome assembly [GO:0006334]; response to water deprivation [GO:0009414],nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982] locus:2026565;locus:2026570;locus:2053195;locus:2077127;locus:2078166;locus:2084380;locus:2168037;locus:2174314; AT1G07660AT1G07820;AT2G28740;AT3G45930;AT3G46320;AT3G53730;AT5G59690;AT5G59970;,AT1G07660 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling (By similarity) Histone H4,Histone H4 (Fragment) Q7XUC9,A0A0P0WNF9 Q7XUC9_ORYSJ,A0A0P0WNF9_ORYSJ OSJNBb0064P21.1 P0534A03.129 LOC_Os03g02780 LOC_Os10g39410 Os01g0835900 Os02g0684500 Os03g0119900 Os04g0583600 Os05g0462700 Os05g0466600 Os07g0549900 Os09g0433600 Os09g0553100 Os10g0539500 OJ1081_G10.11 OJ1212_A08.14 OJ1263H11.10 OJ1280_A04.1 OJ1387_F08.9 OJ1525_A02.10 OJ1717_A09.1 OsJ_03994 OsJ_07955 OsJ_09199 OsJ_15915 OsJ_18829 OsJ_24666 OsJ_29473 OsJ_30268 OsJ_32304 OSJNBa0009E21.13 OSJNBa0025B05.1 OSJNBa0088A01.17 OSNPB_010835900 OSNPB_020684500 OSNPB_030119900 OSNPB_040583600 OSNPB_050462700 OSNPB_050466600 OSNPB_070549900 OSNPB_090433600 OSNPB_090553100 OSNPB_100539500 P0506B12.23,Os05g0462900 OSNPB_050462900 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. {ECO:0000256|RuleBase:RU000528, ECO:0000256|SAAS:SAAS00581158}. ENOG411E3RX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os04g0672300 protein (cDNA clone:J033032C09, full insert sequence) Q0J948 Q0J948_ORYSJ Os04g0672300 Os04g0672300 OSNPB_040672300 ENOG411E3RY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) NA NA NA NA NA NA NA ENOG411DQXJ IDM1,MZN1.7,ROS4 F4IXE7,Q9LUZ5,A0A1P8B9T2,A0A1P8B9T7,A0A1P8B9T4,A0A1P8B9R9,A0A1P8B9U2,A0A1P8B9T6,A0A1P8B9T1,A0A1P8B9T3,A0A1I9LNP2,F4KGA3,A0A1I9LNP0,A0A1I9LNN9 IDM1_ARATH,Q9LUZ5_ARATH,A0A1P8B9T2_ARATH,A0A1P8B9T7_ARATH,A0A1P8B9T4_ARATH,A0A1P8B9R9_ARATH,A0A1P8B9U2_ARATH,A0A1P8B9T6_ARATH,A0A1P8B9T1_ARATH,A0A1P8B9T3_ARATH,A0A1I9LNP2_ARATH,F4KGA3_ARATH,A0A1I9LNP0_ARATH,A0A1I9LNN9_ARATH Increased DNA methylation 1 (Histone H3 acetyltransferase IDM1) (EC 2.3.1.-) (Protein ROS4) (Repressor of silencing 4),Gb|AAC80581.1 (PHD finger transcription factor),PHD finger transcription factor,Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein DISRUPTION PHENOTYPE: DNA hypermethylation. {ECO:0000269|PubMed:22700931}. FUNCTION: Histone H3 acetyltransferase that binds methylated DNA at chromatin sites lacking histone H3K4 di- or trimethylation and catalyzes H3K18 and H3K23 acetylation (PubMed:22733760, PubMed:22700931). Prevents the transcriptional silencing of transgenes and of some endogenous genes (PubMed:22733760, PubMed:22700931). Requires the presence of IDM2 for efficient H3K18 acetylation, but not for H3K23 acetylation (PubMed:25002145). {ECO:0000269|PubMed:22700931, ECO:0000269|PubMed:22733760, ECO:0000269|PubMed:25002145}. 2.3.1.48; 2.3.1.- 131329,125097,116385,103818,108602,124426,98192,109528,121073,124171,116456,121328,126694,103865 Increased DNA methylation 1 (Histone H3 acetyltransferase IDM1) (EC 2.3.1.-) (Protein ROS4) (Repressor of silencing 4),Gb|AAC80581.1 (PHD finger transcription factor),PHD finger transcription factor,Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein nucleus [GO:0005634]; plasmodesma [GO:0009506]; double-stranded methylated DNA binding [GO:0010385]; histone acetyltransferase activity [GO:0004402]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; histone H3-K14 acetylation [GO:0044154]; histone H3-K18 acetylation [GO:0043971]; histone H3-K23 acetylation [GO:0043972]; regulation of DNA methylation [GO:0044030]; regulation of transcription, DNA-templated [GO:0006355]; RNA-directed DNA methylation [GO:0080188]; transcription, DNA-templated [GO:0006351],metal ion binding [GO:0046872],metal ion binding [GO:0046872]; N-acetyltransferase activity [GO:0008080],metal ion binding [GO:0046872]; response to chitin [GO:0010200],metal ion binding [GO:0046872]; transferase activity, transferring acyl groups [GO:0016746] TISSUE SPECIFICITY: Expressed in cotyledons and hypocotyls in young seedlings. {ECO:0000269|PubMed:22733760}. locus:2086395;,locus:2178828; AT3G14980,AT5G58610 PHD-finger Os07g0693650 protein (PHD-type zinc finger protein-like),Os04g0691700 protein (Fragment) Q84NP5,A0A0P0WGU7 Q84NP5_ORYSJ,A0A0P0WGU7_ORYSJ P0034A04.132 Os07g0693650 OsJ_25694 OSNPB_070693650,Os04g0691700 OSNPB_040691700 ENOG411EF2M Q9FRH9 Q9FRH9_ARATH Octicosapeptide/Phox/Bem1p family protein (Uncharacterized protein F4F7.31) 30603 Octicosapeptide/Phox/Bem1p family protein (Uncharacterized protein F4F7.31) locus:2033030; AT1G25300 PB1 NA NA NA NA NA NA NA ENOG411DQX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EC0X MYH19.6 A0A1P8BDW4,F4KFW1 A0A1P8BDW4_ARATH,F4KFW1_ARATH Uncharacterized protein 33237,32976 Uncharacterized protein locus:2178012; AT5G39870 Protein of unknown function (DUF1216) NA NA NA NA NA NA NA ENOG411EC0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EC0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 NA NA NA NA NA NA NA ENOG411EC0W DUF2,DUF5 F4I8W1,Q0WNB1 DUF2_ARATH,DUF5_ARATH DUF724 domain-containing protein 2 (AtDUF2),DUF724 domain-containing protein 5 (AtDUF5) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19795213}. Homozygotes have a WT phenotype FUNCTION: May be involved in the polar growth of plant cells via transportation of RNAs. {ECO:0000305|PubMed:19795213}. 70272,28252 DUF724 domain-containing protein 2 (AtDUF2),DUF724 domain-containing protein 5 (AtDUF5) regulation of growth [GO:0040008]; transport [GO:0006810],chloroplast stroma [GO:0009570]; nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; regulation of growth [GO:0040008]; transport [GO:0006810] TISSUE SPECIFICITY: Expressed in flowers and siliques, and at lower levels in leaves and stems. {ECO:0000269|PubMed:19795213}.,TISSUE SPECIFICITY: Expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:19795213}. locus:2200146;,locus:2065165; AT1G11420,AT2G47220 Protein of unknown function (DUF724) NA NA NA NA NA NA NA ENOG411EC0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411EC0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC0S Q9LK91 Q9LK91_ARATH Tudor/PWWP/MBT superfamily protein 73666 Tudor/PWWP/MBT superfamily protein membrane [GO:0016020] locus:2086455; AT3G27860 PWWP domain NA NA NA NA NA NA NA ENOG411EC0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phage integrase family NA NA NA NA NA NA NA ENOG411EC0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA arginine decarboxylase NA NA NA NA NA NA NA ENOG411EE31 PCMP-E24,PCMP-E67 Q4V389,Q9C9I6 PPR55_ARATH,PP116_ARATH Pentatricopeptide repeat-containing protein At1g22830,Pentatricopeptide repeat-containing protein At1g71490 79315,75406 Pentatricopeptide repeat-containing protein At1g22830,Pentatricopeptide repeat-containing protein At1g71490 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2017744;,locus:2825379; AT1G22830,AT1G71490 repeat-containing protein NA NA NA NA NA NA NA ENOG411EE30 F4JWL8 F4JWL8_ARATH Disease resistance protein (TIR-NBS-LRR class) family 102289 Disease resistance protein (TIR-NBS-LRR class) family ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2146243; AT5G18360 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EC0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411EC0C SRK2D,SNRK2.2 Q39192,F4J0N1 SRK2D_ARATH,F4J0N1_ARATH Serine/threonine-protein kinase SRK2D (EC 2.7.11.1) (OST1-kinase-like 3) (Protein ATHPROKIN A) (SNF1-related kinase 2.2) (SnRK2.2),SNF1-related protein kinase 2.2 snrk2.2 snrk2.3 was found to be ABA-insensitive in seed germination and early seedling growth snrk2.2 snrk2.3 seeds showed green cotyledons at 5 d after sowing (non of the wild-type seeds had germinated at this time) snrk2.2 snrk2.3 had decreased seed dormancy snrk2.2 snrk2.3 was insensitive to the stimulating effect of low ABA concentration (<1 uM)on root growth snrk2.2 snrk2.3 had a greatly reduced level of a 42-kD kinase activity capable of phosphorylating peptides from ABF (for ABA Response Element Binding Factor) transcription factors Slightly reduced seed dormancy; Abnormal stomata; Insensitive to ABA-J. Zhu-2007 FUNCTION: Together with SRK2I, key component and activator of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as seed germination, Pro accumulation, root growth inhibition, dormancy and seedling growth, and, to a lesser extent, stomatal closure. {ECO:0000269|PubMed:17307925}. 2.7.11.1 41207,42008 Serine/threonine-protein kinase SRK2D (EC 2.7.11.1) (OST1-kinase-like 3) (Protein ATHPROKIN A) (SNF1-related kinase 2.2) (SnRK2.2),SNF1-related protein kinase 2.2 intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to gibberellin [GO:0009739]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in seeds, seedlings, roots (especially in tips), stems, leaves, shoots, flowers and siliques. {ECO:0000269|PubMed:15292193, ECO:0000269|PubMed:17307925}. locus:2098755; AT3G50500 S_TKc NA NA NA NA NA NA NA ENOG411EE38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ankyrin Repeat NA NA NA NA NA NA NA ENOG411E9E7 F15B8.70 Q9SVY8,A0A178VE74 Q9SVY8_ARATH,A0A178VE74_ARATH Protein kinase superfamily protein (Uncharacterized protein F15B8.70),Protein kinase superfamily protein 41497,42114 Protein kinase superfamily protein (Uncharacterized protein F15B8.70),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2076656; AT3G57740 kinase family NA NA NA NA NA NA NA ENOG411EE3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 20 NA NA NA NA NA NA NA ENOG411EE3Q NIP3-1,NIP3;1 Q9C6T0,A0A1P8AWT2,A0A1P8AWV8 NIP31_ARATH,A0A1P8AWT2_ARATH,A0A1P8AWV8_ARATH Aquaporin NIP3-1 (NOD26-like intrinsic protein 3-1) (AtNIP3;1),NOD26-like intrinsic protein 31 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. 34579,15188,28699 Aquaporin NIP3-1 (NOD26-like intrinsic protein 3-1) (AtNIP3;1),NOD26-like intrinsic protein 31 integral component of plasma membrane [GO:0005887]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] locus:2826185; AT1G31885 Major intrinsic protein NA NA NA NA NA NA NA ENOG411EE3P Q9LMI3,Q9LMI4,A0A1P8AN77 ADSL5_ARATH,ADSL4_ARATH,A0A1P8AN77_ARATH Delta-9 desaturase-like 5 protein (EC 1.14.19.-),Delta-9 desaturase-like 4 protein (EC 1.14.19.-),Fatty acid desaturase family protein PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. ARA:AT1G06360-MONOMER;,ARA:AT1G06350-MONOMER; R-ATH-75105; 1.14.19.- 35510,35432,37440 Delta-9 desaturase-like 5 protein (EC 1.14.19.-),Delta-9 desaturase-like 4 protein (EC 1.14.19.-),Fatty acid desaturase family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; unsaturated fatty acid biosynthetic process [GO:0006636],integral component of membrane [GO:0016021]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; fatty acid biosynthetic process [GO:0006633] locus:2202250;,locus:2202305; AT1G06360,AT1G06350 fatty acid desaturase family protein NA NA NA NA NA NA NA ENOG411EE3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 domain NA NA NA NA NA NA NA ENOG411EE3F SON1 Q9LS56,Q9FWW8,Q9LUM6,Q9FWW7,Q1G3N6,Q9LXQ0,Q9C6F7,Q9LUS9,Q8LL17,Q9ZV80,F4ID12 FB160_ARATH,FB6_ARATH,FB157_ARATH,FBK1_ARATH,FB201_ARATH,FB339_ARATH,FB64_ARATH,FBL44_ARATH,SON1_ARATH,Q9ZV80_ARATH,F4ID12_ARATH Putative F-box protein At3g18340,Putative F-box protein At1g12190,F-box protein At3g17710,Putative F-box/kelch-repeat protein At1g12170,Putative F-box protein At3g51171,Probable F-box protein At3g44130,Putative F-box protein At1g58090,Putative F-box/LRR-repeat protein At3g16555,Protein SUPPRESSOR OF NIM1 1,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g07120),F-box associated ubiquitination effector family protein FUNCTION: Regulates negatively a plant defense signaling pathway which is independent of salicylic acid (SA) and systemic acquired resistance (SAR). Confers sensitivity to P.syringae and P.parasitica. {ECO:0000269|PubMed:12119368}. 41626,43357,43421,42829,29921,36439,42890,40886,43322,40599,27113 Putative F-box protein At3g18340,Putative F-box protein At1g12190,F-box protein At3g17710,Putative F-box/kelch-repeat protein At1g12170,Putative F-box protein At3g51171,Probable F-box protein At3g44130,Putative F-box protein At1g58090,Putative F-box/LRR-repeat protein At3g16555,Protein SUPPRESSOR OF NIM1 1,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g07120),F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],SCF ubiquitin ligase complex [GO:0019005]; ubiquitin-protein transferase activity [GO:0004842]; defense response [GO:0006952]; protein ubiquitination [GO:0016567]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] TISSUE SPECIFICITY: Ubiquitous, at low levels. {ECO:0000269|PubMed:12119368}. locus:2095017;,locus:2202002;,locus:2090582;,locus:2202023;,locus:1009023307;,locus:2081398;,locus:2196297;,locus:2088314;,locus:2827561;,locus:2060116;,locus:2202857; AT3G18340,AT1G12190,AT3G17710,AT1G12170,AT3G51171,AT3G44130,AT1G58090,AT3G16555,AT2G17310,AT2G07120,AT1G59630 F-box associated domain NA NA NA NA NA NA NA ENOG411EE3E CRK17,EMB1290 Q8L710,A0A1P8B8K3,A0A1P8B8L9 CRK17_ARATH,A0A1P8B8K3_ARATH,A0A1P8B8L9_ARATH Cysteine-rich receptor-like protein kinase 17 (Cysteine-rich RLK17) (EC 2.7.11.-) (Protein EMBRYO DEFECTIVE 1290),Cysteine-rich receptor-like protein kinase 17 Embryo defective; Cotyledon-D. Meinke-2002 2.7.11.- 76354,111829,80469 Cysteine-rich receptor-like protein kinase 17 (Cysteine-rich RLK17) (EC 2.7.11.-) (Protein EMBRYO DEFECTIVE 1290),Cysteine-rich receptor-like protein kinase 17 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in the whole plant, but preferentially in young seedlings and rosette leaves. {ECO:0000269|PubMed:11100776}. AT4G23250 embryo defective 1290 NA NA NA NA NA NA NA ENOG411EE3D MQK4.11 Q8VZN3 Q8VZN3_ARATH Uncharacterized protein At5g16380 21823 Uncharacterized protein At5g16380 locus:2171297; AT5G16380 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411EE3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EE3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclic nucleotide-binding domain NA NA NA NA NA NA NA ENOG411E95H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WGS project CAID00000000 data contig chromosome NA NA NA NA NA NA NA ENOG411E95N A0A1P8BBK3,A0A1P8BBK9,F4JWD4,A0A1P8BBL4 A0A1P8BBK3_ARATH,A0A1P8BBK9_ARATH,F4JWD4_ARATH,A0A1P8BBL4_ARATH Protein kinase superfamily protein R-ATH-446652; 40971,43761,47809,44251 Protein kinase superfamily protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2183835; AT5G11020 STYKc NA NA NA NA NA NA NA ENOG411E95D MES15,MES13 F4I0K9,F4IE65 MES15_ARATH,MES13_ARATH Putative methylesterase 15, chloroplastic (AtMES15) (EC 3.1.1.-) (Protein ROOT HAIR SPECIFIC 9),Putative methylesterase 13, chloroplastic (AtMES13) (EC 3.1.1.-) FUNCTION: Putative methylesterase. 3.1.1.- 49329,49093 Putative methylesterase 15, chloroplastic (AtMES15) (EC 3.1.1.-) (Protein ROOT HAIR SPECIFIC 9),Putative methylesterase 13, chloroplastic (AtMES13) (EC 3.1.1.-) chloroplast [GO:0009507]; hydrolase activity [GO:0016787] locus:2026434;,locus:2197975; AT1G69240,AT1G26360 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EJM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411EHUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E95V Q93WF1 PLY20_ARATH Probable pectate lyase 20 (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. ARA:AT5G48900-MONOMER; 4.2.2.2 46728 Probable pectate lyase 20 (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2154384; AT5G48900 Pectate lyase NA NA NA NA NA NA NA ENOG411EJM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EJMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: transposon protein NA NA NA NA NA NA NA ENOG411EJMI S1FA3 Q93VI0 S1FA3_ARATH DNA-binding protein S1FA3 FUNCTION: DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. 8071 DNA-binding protein S1FA3 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:505006333; AT3G09735 DNA binding protein S1FA NA NA NA NA NA NA NA ENOG411EENS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferases group 1 NA NA NA NA NA NA NA ENOG411DQVY Q9C9J7,Q2HIW8,A0A1P8AT89 Q9C9J7_ARATH,Q2HIW8_ARATH,A0A1P8AT89_ARATH Uncharacterized protein F14G6.21,At1g21050,Uncharacterized protein 25039,27415,31800 Uncharacterized protein F14G6.21,At1g21050,Uncharacterized protein locus:2011766;,locus:2199577; AT1G76610,AT1G21050 Protein of unknown function DUF617 NA NA NA NA NA NA NA ENOG411DQVX RRP45A,RRP45B,RRP45a,CER7 Q9LDM2,Q9M209,A0A178VEU1,A0A1I9LRV7 CER7L_ARATH,CER7_ARATH,A0A178VEU1_ARATH,A0A1I9LRV7_ARATH Exosome complex component RRP45A (Protein ECERIFERUM 7) (RRP45 homolog A) (Ribosomal RNA-processing protein 45A) (AtRRPA5a),Exosome complex component RRP45B (Protein ECERIFERUM 7) (RNA-processing protein CER7) (RRP45 homolog B) (Ribosomal RNA-processing protein 45B),Ribonuclease PH45A,3'-5'-exoribonuclease family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17351114}.,DISRUPTION PHENOTYPE: Bright green glossy stems and siliques due to reduced cuticular wax accumulation. {ECO:0000269|PubMed:17351114, ECO:0000269|PubMed:22689894}. The double mutant is gametophytic lethal for both female and male gametophytes. Very low germination rate; Bright green, glossy stems, inflorescences, and siliques-L. Kunst-2007 FUNCTION: Probable 3'->5' exoribonuclease involved in the regulation of cuticular wax biosynthesis. Can perform exosomal functions and partially complement the yeast rrp45 null mutant. {ECO:0000269|PubMed:17351114}.,FUNCTION: Probable 3'->5' exoribonuclease involved in the regulation of cuticular wax biosynthesis by controlling the expression of CER3. May act by degrading a specific mRNA species encoding a negative regulator of CER3 transcription. Can perform exosomal functions and complement the yeast rrp45 null mutant. {ECO:0000269|PubMed:17351114, ECO:0000269|PubMed:22689894}. R-ATH-429958;R-ATH-450604;R-ATH-6791226; 33875,48296,31709,41319 Exosome complex component RRP45A (Protein ECERIFERUM 7) (RRP45 homolog A) (Ribosomal RNA-processing protein 45A) (AtRRPA5a),Exosome complex component RRP45B (Protein ECERIFERUM 7) (RNA-processing protein CER7) (RRP45 homolog B) (Ribosomal RNA-processing protein 45B),Ribonuclease PH45A,3'-5'-exoribonuclease family protein cytoplasm [GO:0005737]; cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; nucleus [GO:0005634]; 3'-5'-exoribonuclease activity [GO:0000175]; AU-rich element binding [GO:0017091]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear mRNA surveillance [GO:0071028]; nuclear polyadenylation-dependent mRNA catabolic process [GO:0071042]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; U1 snRNA 3'-end processing [GO:0034473]; U4 snRNA 3'-end processing [GO:0034475]; U5 snRNA 3'-end processing [GO:0034476],exosome (RNase complex) [GO:0000178]; RNA processing [GO:0006396] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, buds and siliques. locus:2089215;,locus:2103316; AT3G12990,AT3G60500 Exosome complex component Os02g0550700 protein (Putative polymyositis/scleroderma autoantigen 1) Q69T30 Q69T30_ORYSJ Os02g0550700 OSNPB_020550700 P0451A10.31 ENOG411DQVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os11g0499600 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed),Os11g0499600 protein (Fragment) Q2R3W3,A0A0P0Y2P3 Q2R3W3_ORYSJ,A0A0P0Y2P3_ORYSJ Os11g0499600 LOC_Os11g30560 Os11g0499600 OsJ_33972 OSNPB_110499600,Os11g0499600 OSNPB_110499600 ENOG411DQVQ Q9T020,Q9SJT0 Y4391_ARATH,Y2214_ARATH Probable receptor-like protein kinase At4g39110 (EC 2.7.11.-),Probable receptor-like protein kinase At2g21480 (EC 2.7.11.-) 2.7.11.- 96505,95936 Probable receptor-like protein kinase At4g39110 (EC 2.7.11.-),Probable receptor-like protein kinase At2g21480 (EC 2.7.11.-) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2136338;,locus:2050080; AT4G39110,AT2G21480 receptor-like protein kinase Os06g0126250 protein (Putative receptor-like protein kinase) Q8H651 Q8H651_ORYSJ Os06g0126250 OsJ_19957 OSJNBa0038F22.2 OSNPB_060126250 P0425F02.36 ENOG411DQVP CPL1 Q5YDB6 CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) DISRUPTION PHENOTYPE: Grows more rapidly and flower later than wild-type plants. Increased tolerance to salt stress and to ABA during seed germination but more sensitive to freezing damage at the seedling stage, by the enhanced expression of abiotic stress-induced genes. Hypersentitivity to MeJA, accumulates high levels of anthocyanin on medium containing MeJA. Confers wound hyperresponsiveness of JA-biosynthetic genes. {ECO:0000269|PubMed:11874572, ECO:0000269|PubMed:12149434, ECO:0000269|PubMed:12149453, ECO:0000269|PubMed:15388846, ECO:0000269|PubMed:18764923}. Seedling growth sensitive to freezing; Germination insensitive to ABA and resistant to salt stress-J. Zhu-2002 FUNCTION: Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II. Together with CPL2, required for male gametes fertility. Multifunctional regulator that modulates plant growth, stress, and phytohormones responses. Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated and jasmonic acid (JA) mediated signaling pathways, NaCl, osmotic stress, wounding, and cold resistance. Regulates negatively the expression of jasmonic acid (JA) biosynthetic genes in response to wounding (PubMed:11874572, PubMed:12149434, PubMed:12149453, PubMed:15388846, PubMed:18506580, PubMed:18764923). Forms a complex with RCF3 that modulates co-transcriptional processes such as mRNA capping and polyadenylation, and functions to repress stress-inducible gene expression (PubMed:23874224). Dephosphorylates RCF3 (PubMed:26227967). Involved in the dephosphorylation of EIF4A3. This dephosphorylation retains EIF4A3 in the nucleus and limits its accumulation in the cytoplasm. Is essential for the degradation of the nonsense-mediated mRNA decay (NMD) transcripts (PubMed:26887918). {ECO:0000269|PubMed:11874572, ECO:0000269|PubMed:12149434, ECO:0000269|PubMed:12149453, ECO:0000269|PubMed:15388846, ECO:0000269|PubMed:18506580, ECO:0000269|PubMed:18764923, ECO:0000269|PubMed:23874224, ECO:0000269|PubMed:26227967, ECO:0000269|PubMed:26887918}. 3.1.3.16 108421 RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; metal ion binding [GO:0046872]; phosphatase activity [GO:0016791]; phosphoprotein phosphatase activity [GO:0004721]; phosphoserine phosphatase activity [GO:0004647]; RNA binding [GO:0003723]; abscisic acid-activated signaling pathway [GO:0009738]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; multicellular organism development [GO:0007275]; negative regulation of transcription, DNA-templated [GO:0045892]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed at very low levels in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:12149453}. locus:2119053; AT4G21670 RNA polymerase II C-terminal domain phosphatase-like Double-stranded RNA-binding domain (DsRBD)-containing protein-like (Os02g0639000 protein) (cDNA clone:J013105C11, full insert sequence),Os04g0529500 protein (Fragment) Q6H5U8,A0A0P0WCN4,A0A0P0WCM2 Q6H5U8_ORYSJ,A0A0P0WCN4_ORYSJ,A0A0P0WCM2_ORYSJ Os02g0639000 OsJ_07667 OSJNBa0014E22.37 OSNPB_020639000 P0010C01.13,Os04g0529500 OSNPB_040529500 ENOG411DQVV TRN2 Q9FIQ5 TRN2_ARATH Protein TORNADO 2 (Protein EKEKO) (TETRASPANIN-1) DISRUPTION PHENOTYPE: Severe dwarfism combined with twisted and malformed organs, and sterility. Loss of initial meristematic divisions in the epidermal/lateral root cap. Defection in basipetal transport of auxin (IAA) leading to several development aberrations. {ECO:0000269|PubMed:10887093, ECO:0000269|PubMed:14559222, ECO:0000269|PubMed:16531491, ECO:0000269|PubMed:21658947}. 30 from a total of 40 seedlings (75%) developed at least one leaf 8 days after germination and all double mutant progeny developed leaves by day 20. In 19 stm-1 trn2-23010 double mutant seedlings leaves initiated from the base of the cotyledons which were always fused due to lack of early STM activity. In the remaining 21 double mutant progeny single leaves or side shoots arose laterally from the outside of the fused base of the petioles instead of being initiated from the shoot apex and thus resembled stm-1 mutant side shoots which are initiated after a long delay.,The double mutant progeny does not develop flowers.,About 51% of stm-5 trn2-23010 double mutant seedlings produced leaves by 8 days after germination compared to only 3% in the stm-5 single mutant. In contrast to combination with stm-1 leaves of stm-5 trn2-23010 double mutants never initiated from outside the base of the cotyledon petioles but emerged internally to the cotyledons where the SAM normally resides in wild type.,No obvious phenotype different from those of trn1-2 or trn2-4 was observed in double mutant.,Enlarged apical dome altered in shape and often protruding (the mutant meristem therefore contains over 40% more cells.),Phenotypic differences from wild type development first became evident with the emergence of the first true leaves. All leaves were severely twisted and irregularly shaped and many lacked large parts of the leaf lamina. This twisting phenotype was not restricted to the vegetative phase but involved cauline leaves the inflorescence stem and all floral whorls.,The architecture of mutant flowers was distorted and was accompanied by reduced numbers of floral organs in the outer 3 whorls. This effect was least pronounced in the whorl of sepals (3.2 as against 4 in wild type) but the number of petals was reduced to 2.4 (4 in wild type) and on average mutant flowers had only 3.5 stamens compared to 6 in wild type. In contrast all mutant flowers contained 2 carpels such as in wild type but in 52% of mutant flowers both carpels remained unfused and ovules were exposed.,Unfused carpels did not form siliques later during development. In contrast the remaining flowers with fused carpels developed siliques which were twisted and failed to fully elongate. However these siliques produced no fertile seeds and reciprocal crosses with wild type plants revealed nonfunctionality of both male and female reproductive organs.,trn2-23010 clv3-2 double mutant flowers also exhibited an additive phenotype not observed in single clv3-2 or trn2-23010 plants: double mutant flowers had reduced organ numbers in sepal petal and stamen whorls reminiscent of trn2-23010 single mutant flowers and in contrast to clv3-2 single mutant flowers there was no increase in the number of stamens. However in the fourth whorl where trn2 loss-of-function interferes with the fusion of two carpels to the single style double mutant flowers were comprised of multiple carpels most of them fused (73%) as typically found in the clv3-2 mutation. Supernumerary stem cells in clv3-2 mutant floral meristems therefore not only led to the initiation of multiple carpels in the trn2 background but also favoured their fusion to a single style which remained severely twisted. In addition to a style consisting of multiple carpels over-proliferating callus-type tissue was observed at the tip of the style in all flowers.,Whereas carpels were completely absent in wus-1 flowers and only 1.6 stamens (compared to 6 in wild type) developed in the third floral whorl all trn2-23010 wus-1 flowers developed 2 carpels which in contrast to trn2-23010 single mutants were seldom open (33%) and more usually fused. Consistent with the increased number of stamens (4.2 on average) in the third floral whorl the trn2 mutation may compensate for a premature consumption of stem cells in wus-1 flowers. In contrast the number of sepals and petals in the outer perianth whorls in trn2-23010 wus-1 was closer in number to that of the trn2 mutant rather than to wus-1 single mutant flowers. Twisted, irregular leaves lacking large parts of the lamina; Twisted inflorescence stems and floral whorls; Reduced sepal, petal, and stamen number; Incomplete penetrance of unfused carpels with exposed ovules; Sterile-W. Werr-2007 FUNCTION: Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization, as well as cell differentiation. Regulates shoot apical meristem (SAM) organization in the peripheral zone. Required for initial meristematic divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis. Together with WIH peptides, promotes megasporogenesis. {ECO:0000269|PubMed:10887093, ECO:0000269|PubMed:14559222, ECO:0000269|PubMed:16531491, ECO:0000269|PubMed:17351828, ECO:0000269|PubMed:21658947}. MISCELLANEOUS: 'Ekeko' is derived from Inca language (quechua) for small and hunchbacked fortune god. {ECO:0000305|PubMed:14559222}. 30287 Protein TORNADO 2 (Protein EKEKO) (TETRASPANIN-1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; auxin-activated signaling pathway [GO:0009734]; leaf vascular tissue pattern formation [GO:0010305]; megasporogenesis [GO:0009554]; meristem structural organization [GO:0009933]; radial pattern formation [GO:0009956]; regulation of meristem structural organization [GO:0009934]; root morphogenesis [GO:0010015] DEVELOPMENTAL STAGE: Strongly expressed in all types of meristems, including the shoot apical meristem (SAM) and lateral organ primordia. Also detected in the lamina of the cotyledons, especially in the mesophyll and vascular bundles. In leaf primorida preferentially present in vascular strands and at the distal tip of the leaflet. In the floral meristem, first detected in flanking sepal primordia, and later expressed in stamens and carpels in flowers. {ECO:0000269|PubMed:16531491, ECO:0000269|PubMed:17351828}. TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, apex, siliques and flowers. Present in ovules, prominently in nucellus and integuments. {ECO:0000269|PubMed:14559222, ECO:0000269|PubMed:16531491, ECO:0000269|PubMed:21658947}. locus:2178570; AT5G46700 Tetraspanin family Os03g0100020 protein A3AD49 A3AD49_ORYSJ Os03g0100020 OsJ_09042 OSNPB_030100020 ENOG411DQVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os01g0224400 protein (Fragment) A0A0P0UZT6 A0A0P0UZT6_ORYSJ Os01g0224400 OSNPB_010224400 ENOG411DQVT Q8GYL7 PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830, chloroplastic 95217 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2151236; AT5G02830 pentatricopeptide repeat-containing protein At5g02830 Os03g0284900 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J013135M09, full insert sequence),Os03g0284900 protein (Fragment) Q10N26,A0A0P0VW89,A0A0N7KH23 Q10N26_ORYSJ,A0A0P0VW89_ORYSJ,A0A0N7KH23_ORYSJ Os03g0284900 LOC_Os03g17634 Os03g0284900 OSNPB_030284900,Os03g0284900 OSNPB_030284900 ENOG411DQVJ SDG41 Q3ECY6,A0A1P8AU25 SDG41_ARATH,A0A1P8AU25_ARATH Protein SET DOMAIN GROUP 41 (EC 2.1.1.-),SET domain-containing protein 2.1.1.- 61927,63553 Protein SET DOMAIN GROUP 41 (EC 2.1.1.-),SET domain-containing protein methyltransferase activity [GO:0008168] locus:504956288; AT1G43245 Protein SET DOMAIN GROUP Os04g0423600 protein Q0JD76,A0A0P0WAK9 Q0JD76_ORYSJ,A0A0P0WAK9_ORYSJ Os04g0423600 Os04g0423600 OSNPB_040423600,Os04g0423600 OSNPB_040423600 ENOG411DQVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os12g0613600 protein (Remorin, C-terminal region family protein, expressed) (cDNA clone:002-174-F01, full insert sequence) Q2QM86 Q2QM86_ORYSJ Os12g0613600 LOC_Os12g41940 Os12g0613600 OSNPB_120613600 ENOG411DQVH RCA P10896,F4IVZ7 RCA_ARATH,F4IVZ7_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (RA) (RuBisCO activase),Rubisco activase FUNCTION: Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure. 51981,48500 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (RA) (RuBisCO activase),Rubisco activase apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; nucleus [GO:0005634]; plastoglobule [GO:0010287]; stromule [GO:0010319]; thylakoid [GO:0009579]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; enzyme regulator activity [GO:0030234]; ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity [GO:0046863]; defense response to bacterium [GO:0042742]; leaf senescence [GO:0010150]; response to cold [GO:0009409]; response to jasmonic acid [GO:0009753]; response to light stimulus [GO:0009416],ATP binding [GO:0005524] locus:2063922; AT2G39730 Ribulose bisphosphate carboxylase oxygenase activase Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (RA) (RuBisCO activase),Os11g0707000 protein,Os11g0707100 protein (Fragment),Os11g0707000 protein (Fragment),Os11g0707050 protein P93431,A0A0P0Y5U3,A0A0P0Y5Q1,A0A0P0Y677,A0A0N7KTE8 RCA_ORYSJ,A0A0P0Y5U3_ORYSJ,A0A0P0Y5Q1_ORYSJ,A0A0P0Y677_ORYSJ,A0A0N7KTE8_ORYSJ RCA RCAA1 RCAA2 Os11g0707000 LOC_Os11g47970 OsJ_033539,Os11g0707000 OSNPB_110707000,Os11g0707100 OSNPB_110707100,Os11g0707050 OSNPB_110707050 FUNCTION: Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure. ENOG411DQVN EMB506 Q9SQK3,A0A1P8BCV8 EM506_ARATH,A0A1P8BCV8_ARATH Ankyrin repeat domain-containing protein EMB506, chloroplastic (Protein EMBRYO DEFECTIVE 506),Ankyrin repeat family protein Embryo defective; Globular-M. Devic-1999 FUNCTION: Involved in the initial differentiation of the proplastid during the embryo development. Also required for correct cotyledon, true leaf and cauline leaf margin development. {ECO:0000269|PubMed:11489192, ECO:0000269|PubMed:16786300}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 35461,33038 Ankyrin repeat domain-containing protein EMB506, chloroplastic (Protein EMBRYO DEFECTIVE 506),Ankyrin repeat family protein chloroplast [GO:0009507] DEVELOPMENTAL STAGE: Expressed during embryo development and after the bolting stage, in mature culine leaves and in flowers. Not detected at the protein level at the rosette stage of development. {ECO:0000269|PubMed:11489192}. TISSUE SPECIFICITY: Expressed in roots, inflorescence stems, flowers, siliques, dry seeds and mature cauline leaves. {ECO:0000269|PubMed:11489192, ECO:0000269|PubMed:17092312}. locus:2173767; AT5G40160 ankyrin repeat domain-containing protein EMB506 NA NA NA NA NA NA NA ENOG411DQVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os03g0795400 protein B9F6F9 B9F6F9_ORYSJ Os03g0795400 Os03g0795400 OsJ_12941 OSNPB_030795400 ENOG411DQVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: WD repeatcontaining protein NA NA NA NA NA NA NA ENOG411DQVB MIJ24.8 Q9FKA3 Q9FKA3_ARATH TLD-domain containing nucleolar protein 59908 TLD-domain containing nucleolar protein locus:2164875; AT5G39590 TLDc Os04g0663700 protein B9FCZ7 B9FCZ7_ORYSJ Os04g0663700 OsJ_16520 OSNPB_040663700 ENOG411DQVA O80889,A0A1P8AZM5,A0A1P8AZN3,A0A1P8AZP9 O80889_ARATH,A0A1P8AZM5_ARATH,A0A1P8AZN3_ARATH,A0A1P8AZP9_ARATH Alpha/beta-Hydrolases superfamily protein (At2g32520) (Putative carboxymethylenebutenolidase),Alpha/beta-Hydrolases superfamily protein 25921,24332,34720,30037 Alpha/beta-Hydrolases superfamily protein (At2g32520) (Putative carboxymethylenebutenolidase),Alpha/beta-Hydrolases superfamily protein chloroplast [GO:0009507]; cytosol [GO:0005829]; hydrolase activity [GO:0016787]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; metabolic process [GO:0008152]; response to zinc ion [GO:0010043],hydrolase activity [GO:0016787]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; metabolic process [GO:0008152] locus:2060257; AT2G32520 Dienelactone hydrolase family protein Os01g0531500 protein,Carboxymethylenebutenolidase-like protein (Os01g0531500 protein) (cDNA clone:001-208-G04, full insert sequence) A2ZTZ7,Q8LQS5 A2ZTZ7_ORYSJ,Q8LQS5_ORYSJ Os01g0531500 OsJ_02079 OSNPB_010531500,Os01g0531500 Os01g0531500 OSNPB_010531500 P0702H08.32 ENOG411DQVG COG0212 Q9SRE0 5FCLL_ARATH 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 (Protein CLUSTERS OF ORTHOLOGOUS GROUP 212) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:21538139}. FUNCTION: May be involved in thiamine metabolism. Does not possess 5-formyltetrahydrofolate cyclo-ligase activity in vitro. {ECO:0000269|PubMed:21538139}. 39559 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 (Protein CLUSTERS OF ORTHOLOGOUS GROUP 212) chloroplast [GO:0009507]; ATP binding [GO:0005524]; intracellular mRNA localization [GO:0008298] locus:2030111; AT1G76730 5-formyltetrahydrofolate cycloligase 5-formyltetrahydrofolate cyclo-ligase family protein, putative, expressed (Os12g0168000 protein) (cDNA clone:J013031H02, full insert sequence),Os12g0168000 protein Q2QX67,A0A0P0Y793 Q2QX67_ORYSJ,A0A0P0Y793_ORYSJ LOC_Os12g07020 Os12g0168000 OSNPB_120168000,Os12g0168000 OSNPB_120168000 ENOG411DQVF D6PKL2 Q39183 D6KL2_ARATH Serine/threonine-protein kinase D6PKL2 (EC 2.7.11.1) (D6 protein kinase-like 2) (Serine/threonine-protein kinase AtPK5) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the quadruple d6pk, d6pkl1, d6pkl2 and d6pkl3 mutants are deficient in lateral root formation and mildly agravitropic, have fused or single cotyledons and narrow and twisted leaves, form few axillary shoots, are almost infertile and impaired in phototropic hypocotyl bending when exposed to lateral white light. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. Quadruple mutant displays defects in many aspects of development. Defects include:abnormal leaves leaves are narrow and twisted; reduced number of axillary shoots and reduced fertility. In addition mutants also display single or fused cotyldons reduced number of lateral roots and are mildy agravitropic. FUNCTION: Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation. D6PK-mediated PIN phosphorylation promotes auxin transport in the hypocotyl and this is a prerequisite for PHOT1-dependent hypocotyl bending. {ECO:0000269|PubMed:19168677, ECO:0000269|PubMed:23709629}. 2.7.11.1; 2.7.11.1 64557 Serine/threonine-protein kinase D6PKL2 (EC 2.7.11.1) (D6 protein kinase-like 2) (Serine/threonine-protein kinase AtPK5) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2160922; AT5G47750 protein kinase G11A-like Os09g0258500 protein Q6K1W7 Q6K1W7_ORYSJ Os09g0258500 B1279D09.7 OSNPB_090258500 P0523B07.45 ENOG411DQVE QKY B8XCH5 QKY_ARATH Protein QUIRKY DISRUPTION PHENOTYPE: STRUBBELIG-like (sub-like) mutant (SLM) phenotype characterized by defects in outer integument development, floral organ shape, and stem twisting, as well as cellular defects in the floral meristem and in root hair patterning. {ECO:0000269|PubMed:19180193}. Dwarf; Twisted leaves, inflorescence stems, and petals; Abnormal floral phyllotaxy-K. Schneitz-2009 FUNCTION: May be involved in Ca 2(+)-dependent signaling and membrane trafficking. Plays a role in fruit dehiscence (Probable). Components of the machinery involved in organ development mediated by the receptor-like kinase STRUBBELIG (SUB) (PubMed:19180193, PubMed:20298225). {ECO:0000269|PubMed:19180193, ECO:0000303|PubMed:20298225}. 121413 Protein QUIRKY integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; transferase activity, transferring glycosyl groups [GO:0016757]; plant organ development [GO:0099402] locus:2019070; AT1G74720 Plant phosphoribosyltransferase C-terminal Os01g0587300 protein (Putative phosphoribosyltransferase),Os09g0447825 protein,Os09g0447850 protein Q8S1F8,B9G3X4,A0A0P0XMH6 Q8S1F8_ORYSJ,B9G3X4_ORYSJ,A0A0P0XMH6_ORYSJ Os01g0587300 OsJ_02397 OSNPB_010587300 P0700A11.12,Os09g0447825 OsJ_29569 OSNPB_090447825,Os09g0447850 OSNPB_090447850 ENOG411DQVD IMK3,MRLK C0LGP9,A0A1I9LMR2 IMK3_ARATH,A0A1I9LMR2_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 (EC 2.7.11.1) (Protein INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 3) (Protein MERISTEMATIC RECEPTOR-LIKE KINASE),Meristematic receptor-like kinase FUNCTION: Can phosphorylate AGL24. {ECO:0000269|Ref.9}. 2.7.11.1 84687,55284 Probable leucine-rich repeat receptor-like protein kinase IMK3 (EC 2.7.11.1) (Protein INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 3) (Protein MERISTEMATIC RECEPTOR-LIKE KINASE),Meristematic receptor-like kinase integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] TISSUE SPECIFICITY: Expressed in meristems, including roots, vegetative, inflorescence and floral meristems, and in embryos. {ECO:0000269|Ref.7, ECO:0000269|Ref.8}. AT3G56100 Leucine-rich repeat receptor-like protein kinase Leucine Rich Repeat family protein, expressed (Os11g0107700 protein) (cDNA clone:002-138-G09, full insert sequence),Os11g0107700 protein,Os12g0107700 protein (Fragment),Os03g0297800 protein (Fragment) B7F2I6,B9GBF3,A0A0P0Y5Z4,A0A0N7KH38 B7F2I6_ORYSJ,B9GBF3_ORYSJ,A0A0P0Y5Z4_ORYSJ,A0A0N7KH38_ORYSJ Os11g0107700 LOC_Os11g01620 OSNPB_110107700,Os11g0107700 OsJ_34940 OSNPB_110107700,Os12g0107700 OSNPB_120107700,Os03g0297800 OSNPB_030297800 ENOG411DQV9 HCF164 O23166 TR164_ARATH Thioredoxin-like protein HCF164, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 164) DISRUPTION PHENOTYPE: High chlorophyll fluorescence and deficiency in the accumulation of the cytochrome b6f complex subunits. {ECO:0000269|PubMed:11701887}. Seedling lethal-K. Meierhoff-2001 FUNCTION: Thiol-disulfide oxidoreductase that participates in various redox reactions in the chloroplast. Mediates the reduction of PSI-N in the thylakoid lumen. May interact and probably reduce other target proteins of the thylakoid membrane, such as FTSH2, FTSH8, LHCB5, atpA, atpB, atpE, petA and petC. Involved in the biogenesis of the plastid cytochrome b6f complex. Reducing equivalents are provided by stromal M-type thioredoxins and probably transduced through the thylakoid membrane by CCDA. Possesses low insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:11701887, ECO:0000269|PubMed:16997915}. 28745 Thioredoxin-like protein HCF164, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 164) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; thylakoid lumen [GO:0031977]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; cytochrome b6f complex assembly [GO:0010190]; glycerol ether metabolic process [GO:0006662] locus:2115110; AT4G37200 thioredoxin-like protein HCF164 Thioredoxin-like protein HCF164, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 164) Q7Y0D4 TR164_ORYSJ Os03g0767500 LOC_Os03g55820 OSJNBa0079B15.5 OSJNBb0106M04.22 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions in the chloroplast. ENOG411DQV8 CAX6,CAX5,CAX2 Q9LFZ8,Q8L783,Q39254 CAX6_ARATH,CAX5_ARATH,CAX2_ARATH Putative vacuolar cation/proton exchanger 6 (Ca(2+)/H(+) antiporter CAX6) (Ca(2+)/H(+) exchanger 6) (Protein CATION EXCHANGER 6),Vacuolar cation/proton exchanger 5 (Ca(2+)/H(+) antiporter CAX5) (Ca(2+)/H(+) exchanger 5) (Protein CATION EXCHANGER 5),Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) antiporter CAX2) (Ca(2+)/H(+) exchanger 2) (Protein CATION EXCHANGER 2) FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase (By similarity). {ECO:0000250}.,FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase. {ECO:0000269|PubMed:12496310}. 49583,48096,48215 Putative vacuolar cation/proton exchanger 6 (Ca(2+)/H(+) antiporter CAX6) (Ca(2+)/H(+) exchanger 6) (Protein CATION EXCHANGER 6),Vacuolar cation/proton exchanger 5 (Ca(2+)/H(+) antiporter CAX5) (Ca(2+)/H(+) exchanger 5) (Protein CATION EXCHANGER 5),Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) antiporter CAX2) (Ca(2+)/H(+) exchanger 2) (Protein CATION EXCHANGER 2) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; calcium:proton antiporter activity [GO:0015369],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuole [GO:0005773]; calcium:proton antiporter activity [GO:0015369]; calcium ion transport [GO:0006816] locus:2020462;,locus:2088130; AT1G55720,AT1G55730,AT3G13320 Vacuolar cation proton exchanger Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger 2) (OsCAX2),Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (OsCAX3),Os02g0138900 protein (Fragment) Q5KQN0,Q6K1C4,A0A0N7KEN3 CAX2_ORYSJ,CAX3_ORYSJ,A0A0N7KEN3_ORYSJ CAX2 Os03g0397400 LOC_Os03g27960,CAX3 Os04g0653200 LOC_Os04g55940 OsJ_16442 OSJNBa0060D06.18,Os02g0138900 OSNPB_020138900 FUNCTION: Vacuolar cation/proton exchanger (CAX). Translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase. {ECO:0000269|PubMed:16043430}. ENOG411DQV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ornithine decarboxylase Os02g0482400 protein (Putative ornithine decarboxylase),Os04g0136500 protein,Os09g0543400 protein Q6K2K1,A0A0P0W6G1,A0A0P0XPU2 Q6K2K1_ORYSJ,A0A0P0W6G1_ORYSJ,A0A0P0XPU2_ORYSJ Os02g0482400 OSJNBa0091C16.28 OSNPB_020482400,Os04g0136500 OSNPB_040136500,Os09g0543400 OSNPB_090543400 ENOG411DQV2 Q9FLJ4 PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400 74440 Pentatricopeptide repeat-containing protein At5g61400 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2163218; AT5G61400 Pentatricopeptide repeat-containing protein Os09g0417500 protein (Putative fertility restorer homologue A) Q6EPZ3 Q6EPZ3_ORYSJ Os09g0417500 OSNPB_090417500 P0014G10.38 ENOG411DQV1 STL2P,MFB16.9 Q39221,Q9FGP3 STLP2_ARATH,Q9FGP3_ARATH SEC12-like protein 2,At5g50550 (St12p protein) (Transducin/WD40 repeat-like superfamily protein) FUNCTION: Required for the formation or budding of transport vesicles from the ER. {ECO:0000269|PubMed:1396601}. MISCELLANEOUS: In the process of transport, may migrate to the Golgi apparatus and function in subsequent transport events. {ECO:0000250}. R-ATH-204005; 42794,42078 SEC12-like protein 2,At5g50550 (St12p protein) (Transducin/WD40 repeat-like superfamily protein) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of endoplasmic reticulum membrane [GO:0030176]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; GTPase activator activity [GO:0005096]; GTPase binding [GO:0051020]; Sar guanyl-nucleotide exchange factor activity [GO:0005090]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein secretion [GO:0009306]; regulation of COPII vesicle coating [GO:0003400],integral component of endoplasmic reticulum membrane [GO:0030176]; GTPase activator activity [GO:0005096]; GTPase binding [GO:0051020]; Sar guanyl-nucleotide exchange factor activity [GO:0005090]; protein secretion [GO:0009306]; regulation of COPII vesicle coating [GO:0003400] locus:2049582;,locus:2159697;locus:2832497; AT2G01470,AT5G50550AT5G50650; Sec12-like protein Os11g0610700 protein (St12p protein, putative, expressed) (cDNA clone:J013093M02, full insert sequence) Q2R1C4 Q2R1C4_ORYSJ LOC_Os11g39650 Os11g0610700 OSNPB_110610700 ENOG411DQV0 IQD19 A0A1P8B5B0,A0A1P8B590,F4JIF3 A0A1P8B5B0_ARATH,A0A1P8B590_ARATH,F4JIF3_ARATH IQ-domain 19 Predominantly produces unbranched trichomes.,Although more than 60% of the double mutant have two trichome branches at least 30% are unbranched.,Does not produce unbranched trichomes.,Reduced trichome branching,Exclusively produces unbranched trichomes.,Aborted trichomes on the first leaf pair increase in trichome clusters and decrease in the apparent trichome cell size.,Double mutants have more trichome branches than frc single mutant but fewer than nok single mutant.,Cumulative phenotype compared to both single mutants.,Nearly 60% of trichomes are unbranched.,Has fewer trichomes than in the try single mutant but more than in the frc single mutant. Reduced trichome branching-D. Oppenheimer-2002 52020,50402,43909 IQ-domain 19 locus:2130200; AT4G14750 IQ calmodulin-binding motif family protein Os10g0420200 protein,IQ calmodulin-binding motif family protein, expressed (Os03g0161400 protein),IQ calmodulin-binding motif family protein, expressed (Os03g0636700 protein) Q0IXM9,Q10RF0,Q75J30 Q0IXM9_ORYSJ,Q10RF0_ORYSJ,Q75J30_ORYSJ Os10g0420200 Os10g0420200 OsJ_31550 OSNPB_100420200,Os03g0161400 LOC_Os03g06570 OSNPB_030161400,LOC_Os03g43580 Os03g0636700 OsJ_11837 OSJNBa0066H15.20 OSNPB_030636700 ENOG411DQV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DQV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DIL domain Os05g0537300 protein (Fragment) Q0DGE1 Q0DGE1_ORYSJ Os05g0537300 Os05g0537300 OSNPB_050537300 ENOG411DQV5 Q9LHQ7,A0A1I9LQA7,F4JER8 MCES1_ARATH,A0A1I9LQA7_ARATH,F4JER8_ARATH mRNA cap guanine-N7 methyltransferase 1 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 1) (mRNA cap methyltransferase 1),mRNA cap guanine-N7 methyltransferase (EC 2.1.1.56) FUNCTION: mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC (By similarity). {ECO:0000250}. R-ATH-72086;R-ATH-77075; 2.1.1.56 42238,40908,42109 mRNA cap guanine-N7 methyltransferase 1 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 1) (mRNA cap methyltransferase 1),mRNA cap guanine-N7 methyltransferase (EC 2.1.1.56) mRNA cap binding complex [GO:0005845]; nucleus [GO:0005634]; mRNA (guanine-N7-)-methyltransferase activity [GO:0004482]; RNA binding [GO:0003723]; 7-methylguanosine mRNA capping [GO:0006370]; RNA (guanine-N7)-methylation [GO:0036265],nucleus [GO:0005634]; mRNA (guanine-N7-)-methyltransferase activity [GO:0004482]; RNA binding [GO:0003723] locus:2083420; AT3G20650 MRNA cap guanine-N7 methyltransferase mRNA cap guanine-N7 methyltransferase 1 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 1) (mRNA cap methyltransferase 1) Q6Z9U7 MCES1_ORYSJ Os08g0180000 LOC_Os08g08200 OsJ_26261 P0455A11.11 FUNCTION: mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC (By similarity). {ECO:0000250}. ENOG411DQV4 A0A1P8AXR3,F4ITY5 A0A1P8AXR3_ARATH,F4ITY5_ARATH Guanylate-binding family protein 51709,69171 Guanylate-binding family protein integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; GTPase activity [GO:0003924],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2040399; AT2G38840 guanylate-binding protein 4-like Os07g0181700 protein (cDNA clone:J013127B03, full insert sequence),Os03g0796800 protein (Fragment) Q0D863,A0A0P0W450 Q0D863_ORYSJ,A0A0P0W450_ORYSJ Os07g0181700 Os07g0181700 OSNPB_070181700,Os03g0796800 OSNPB_030796800 ENOG411E5J2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0193300 protein (cDNA clone:001-104-G10, full insert sequence) Q69Y53 Q69Y53_ORYSJ Os06g0193300 Os06g0193300 OSNPB_060193300 P0698A06.24 ENOG411E5JJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E5JM Q6DR02 Q6DR02_ARATH TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein 28221 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein integral component of membrane [GO:0016021] locus:2092075; AT3G25950 TLC NA NA NA NA NA NA NA ENOG411E5JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411E2AV HIR3 Q9SRH6 HIR3_ARATH Hypersensitive-induced response protein 3 (AtHIR3) 31321 Hypersensitive-induced response protein 3 (AtHIR3) membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; defense response to fungus [GO:0050832] locus:2100242; AT3G01290 PHB Hypersensitive-induced response protein, putative, expressed (Os10g0464000 protein) (Putative hypersensitive-induced response protein) (cDNA clone:J033130D18, full insert sequence) Q8H918 Q8H918_ORYSJ LOC_Os10g32700 Os10g0464000 OsJ_31812 OSJNBa0071K18.18 OSNPB_100464000 ENOG411E2AW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF593 B1358B12.17 protein (Os04g0463200 protein) (cDNA, clone: J100089E21, full insert sequence) Q6MWD8 Q6MWD8_ORYSJ Os04g0463200 Os04g0463200 B1358B12.17 OsJ_15078 OSNPB_040463200 ENOG411E2AT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os05g0169800 protein A0A0P0WIV0 A0A0P0WIV0_ORYSJ Os05g0169800 OSNPB_050169800 ENOG411E2AU Q8VZ68,Q8GRT9,A0A1I9LMU4,F4J017 Q8VZ68_ARATH,Q8GRT9_ARATH,A0A1I9LMU4_ARATH,F4J017_ARATH Is a member of the PF|00364 Biotin-requiring enzymes family (Single hybrid motif superfamily protein) (Uncharacterized protein At1g52670),Putative acetyl-CoA carboxylase biotin-containing subunit (Single hybrid motif superfamily protein),Single hybrid motif superfamily protein 29574,28169,26705,26444 Is a member of the PF|00364 Biotin-requiring enzymes family (Single hybrid motif superfamily protein) (Uncharacterized protein At1g52670),Putative acetyl-CoA carboxylase biotin-containing subunit (Single hybrid motif superfamily protein),Single hybrid motif superfamily protein chloroplast [GO:0009507]; fatty acid biosynthetic process [GO:0006633] locus:2035149;,locus:2093237; AT1G52670,AT3G15690 Biotin carboxyl carrier protein of acetyl-CoA NA NA NA NA NA NA NA ENOG411E2AR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os06g0212400 protein (Putative galactoside 2-alpha-L-fucosyltransferase),Os06g0212300 protein (Putative galactoside 2-alpha-L-fucosyltransferase) Q69TV4,Q69TV6 Q69TV4_ORYSJ,Q69TV6_ORYSJ Os06g0212400 OsJ_20571 OSNPB_060212400 P0021C04.39 P0701E03.16,Os06g0212300 Os06g0212300 OsJ_20570 OSNPB_060212300 P0021C04.37 P0701E03.14 ENOG411E2AS Q9LFQ6,F4K8A5 Q9LFQ6_ARATH,F4K8A5_ARATH Uncharacterized protein F2G14_110 (WPP domain associated protein),WPP domain associated protein 77516,66674 Uncharacterized protein F2G14_110 (WPP domain associated protein),WPP domain associated protein locus:2147800; AT5G14990 NA NA NA NA NA NA NA NA ENOG411E2AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Expressed protein (Os03g0817800 protein) (cDNA clone:006-305-A10, full insert sequence),Os03g0817800 protein Q10BH4,Q0DMC2 Q10BH4_ORYSJ,Q0DMC2_ORYSJ Os03g0817800 LOC_Os03g60340 OSNPB_030817800,Os03g0817800 OSNPB_030817800 ENOG411E2AQ O82230,Q9M098 EBFC2_ARATH,EBFC1_ARATH Nucleoid-associated protein At2g24020, chloroplastic,Nucleoid-associated protein At4g30620, chloroplastic FUNCTION: Participates with ALB4 in thylakoid protein targeting. May function with specific subset of thylakoidal proteins (PubMed:28684427). Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (By similarity). {ECO:0000250|UniProtKB:Q9RXV7, ECO:0000269|PubMed:28684427}.,FUNCTION: Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. {ECO:0000250|UniProtKB:Q9RXV7}. 19812,19583 Nucleoid-associated protein At2g24020, chloroplastic,Nucleoid-associated protein At4g30620, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; DNA binding [GO:0003677],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; DNA binding [GO:0003677] locus:2061471;,locus:2118721; AT2G24020,AT4G30620 Pfam:DUF149 Os02g0180200 protein Q6ETK1 Q6ETK1_ORYSJ Os02g0180200 Os02g0180200 OsJ_05624 OSNPB_020180200 P0544B02.33 ENOG411E2AZ MRH6 Q9ZPQ9,Q9LQB2,A0A1P8AY58,F4I0J2 Q9ZPQ9_ARATH,Q9LQB2_ARATH,A0A1P8AY58_ARATH,F4I0J2_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (At2g03720) (Uncharacterized protein At2g03720),Adenine nucleotide alpha hydrolases-like superfamily protein (At1g69080) (F4N2.5),Adenine nucleotide alpha hydrolases-like superfamily protein Multiple straight hairs Abnormal root hair development-N. Smirnoff-2006 18691,24955,25601,23368 Adenine nucleotide alpha hydrolases-like superfamily protein (At2g03720) (Uncharacterized protein At2g03720),Adenine nucleotide alpha hydrolases-like superfamily protein (At1g69080) (F4N2.5),Adenine nucleotide alpha hydrolases-like superfamily protein hydrolase activity [GO:0016787]; response to stress [GO:0006950]; root hair cell differentiation [GO:0048765],hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2044274;,locus:2033245; AT2G03720,AT1G69080 Universal stress protein Os12g0501400 protein (Universal stress protein family protein, expressed) Q2QQA6 Q2QQA6_ORYSJ LOC_Os12g31710 Os12g0501400 OSNPB_120501400 ENOG411E2AX GOLS2 Q9FXB2 GOLS2_ARATH Galactinol synthase 2 (AtGolS2) (GolS-2) (EC 2.4.1.123) FUNCTION: Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. Promotes stress tolerance of factors such as drought, chilling, salinity and methylviologen (MV), a superoxide radical generating drug, by mediating an increase in levels of the endogenous osmoprotective compounds, galactinol and raffinose. {ECO:0000269|PubMed:11846875, ECO:0000269|PubMed:18502973}. ARA:AT1G56600-MONOMER; 2.4.1.123; 2.4.1.123 38515 Galactinol synthase 2 (AtGolS2) (GolS-2) (EC 2.4.1.123) cytoplasm [GO:0005737]; inositol 3-alpha-galactosyltransferase activity [GO:0047216]; metal ion binding [GO:0046872]; galactose metabolic process [GO:0006012]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Accumulates in mature seeds. {ECO:0000269|PubMed:11846875}. locus:2027549; AT1G56600 Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) Q40710 Q40710_ORYSJ OJ1165_F02.103 OJ1150_E04.126 Os07g0687900 OSNPB_070687900 ENOG411E2AY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os06g0268500 protein,OSJNBb0054B09.12 protein (Os04g0312000 protein),Os06g0267900 protein (Fragment),Os06g0268050 protein,Os04g0312050 protein,Os05g0216900 protein,Os05g0216950 protein A3BAI8,Q7XW03,Q0DD08,A0A0P0WV79,A0A0P0W8R2,A0A0P0WJC1,A0A0P0WJQ7 A3BAI8_ORYSJ,Q7XW03_ORYSJ,Q0DD08_ORYSJ,A0A0P0WV79_ORYSJ,A0A0P0W8R2_ORYSJ,A0A0P0WJC1_ORYSJ,A0A0P0WJQ7_ORYSJ Os06g0268500 OsJ_20918 OSNPB_060268500,OSJNBb0054B09.12 Os04g0312000 OSNPB_040312000,Os06g0267900 Os06g0267900 OSNPB_060267900,Os06g0268050 OSNPB_060268050,Os04g0312050 OSNPB_040312050,Os05g0216900 OSNPB_050216900,Os05g0216950 OSNPB_050216950 ENOG411E2AF Q04613 MI25_ARATH ATP synthase protein MI25 (ORF25) FUNCTION: This is one of the chains of the nonenzymatic component (CF(0) subunit) of the mitochondrial ATPase complex. 21693 ATP synthase protein MI25 (ORF25) integral component of membrane [GO:0016021]; mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [GO:0000276]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP synthesis coupled proton transport [GO:0015986] ATMG00640 ATP synthase protein Uncharacterized protein Q8HCR5 Q8HCR5_ORYSJ orf25 ENOG411E2AG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0682700 protein (cDNA clone:J013001M18, full insert sequence),Os07g0682700 protein (Fragment) Q6Z4P3,A0A0P0XA94 Q6Z4P3_ORYSJ,A0A0P0XA94_ORYSJ Os07g0682700 Os07g0682700 OsJ_25611 OSJNBa0060O17.3-1 OSNPB_070682700,Os07g0682700 OSNPB_070682700 ENOG411E2AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os06g0637500 protein (Putative tuber-specific and sucrose-responsive element binding factor) (cDNA clone:001-203-C12, full insert sequence) (cDNA clone:J033034J16, full insert sequence) Q67WF6 Q67WF6_ORYSJ Os06g0637500 OSNPB_060637500 P0523F01.10 ENOG411E2AE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IMP-specific 5'-nucleotidase NA NA NA NA NA NA NA ENOG411E2AB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E2AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os09g0461800 protein (Os09g0461900 protein) (Putative PrMC3) Q67IZ7 Q67IZ7_ORYSJ Os09g0461900 Os09g0461800 OSJNBa0054F02.40 OSNPB_090461900 ENOG411E2AA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYB family transcription factor Myb-like DNA-binding domain, SHAQKYF class family protein, expressed (Os12g0586300 protein),Os03g0241001 protein Q2QMY1,A0A0P0VVI2 Q2QMY1_ORYSJ,A0A0P0VVI2_ORYSJ LOC_Os12g39640 Os12g0586300 OSNPB_120586300,Os03g0241001 OSNPB_030241001 ENOG411E2AN PGL2,PGL1 O80760,P92982 PGL2_ARATH,PGL1_ARATH Polygalacturonase 1 beta-like protein 2 (AtPGL2) (Aromatic-rich glycoprotein At1g60390) (PG1beta-like protein 2) (Polygalacturonase 1) (Probable polygalacturonase non-catalytic subunit At1g60390),Polygalacturonase 1 beta-like protein 1 (AtPGL1) (Aromatic-rich glycoprotein JP630) (PG1beta-like protein 1) (Polygalacturonase 3) (Probable polygalacturonase non-catalytic subunit JP630) DISRUPTION PHENOTYPE: No visible phenotype. Atpgl1, atpgl2 and atpgl3 triple mutants produce smaller leaves and petioles. {ECO:0000269|PubMed:26106400}. FUNCTION: Involved in cell size determination. {ECO:0000250|UniProtKB:P92990}. 67762,68229 Polygalacturonase 1 beta-like protein 2 (AtPGL2) (Aromatic-rich glycoprotein At1g60390) (PG1beta-like protein 2) (Polygalacturonase 1) (Probable polygalacturonase non-catalytic subunit At1g60390),Polygalacturonase 1 beta-like protein 1 (AtPGL1) (Aromatic-rich glycoprotein JP630) (PG1beta-like protein 1) (Polygalacturonase 3) (Probable polygalacturonase non-catalytic subunit JP630) apoplast [GO:0048046]; cell wall [GO:0005618] DEVELOPMENTAL STAGE: Barely detectable in 6 days after-germination (DAG) seedlings, but highly expressed in 14 DAG seedlings. {ECO:0000269|PubMed:26106400}. TISSUE SPECIFICITY: Expressed in flowers and stems. {ECO:0000269|PubMed:26106400}. locus:2195593;,locus:2034823; AT1G60390,AT1G23760 Non-catalytic subunit NA NA NA NA NA NA NA ENOG411E2AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411E2AJ IAA18,IAA26,PAP1 O24408,Q8LAL2,A0A1I9LMH6 IAA18_ARATH,IAA26_ARATH,A0A1I9LMH6_ARATH Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18),Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1),Auxin-responsive protein FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 29898,30124,29797 Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18),Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1),Auxin-responsive protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2195820;,locus:2088324; AT1G51950,AT3G16500 auxin-responsive protein Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7) Q6H543 IAA7_ORYSJ IAA7 Os02g0228900 LOC_Os02g13520 OsJ_05967 OSJNBb0035N08.7 P0620H05.33 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E2AK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Os05g0485400 protein A0A0N7KKZ7 A0A0N7KKZ7_ORYSJ Os05g0485400 OSNPB_050485400 ENOG411E2AH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Holliday junction DNA helicase ruvB N-terminus Os07g0672500 protein,Os07g0672500 protein (Putative MSP1(Mitochondrial sorting of proteins) protein) B9FUU0,Q7X989 B9FUU0_ORYSJ,Q7X989_ORYSJ Os07g0672500 OsJ_25534 OSNPB_070672500,P0470D12.132 Os07g0672500 OSNPB_070672500 ENOG411E2AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8),Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) (Fragment) Q7G6E4,A0A0P0XRM9 Q7G6E4_ORYSJ,A0A0P0XRM9_ORYSJ LOC_Os10g06630 Os10g0154700 OSJNAa0034B05.5 OSJNBa0004E08.1 OSNPB_100154700,Os10g0154900 OSNPB_100154900 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411E2A6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E2A7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Shaggy-related protein kinase GSK4 (EC 2.7.11.1) (Glycogen synthase kinase3-like protein 4) (OsGSK4) (Shaggy-related protein kinase etha homolog) (OsKETHA) (SKETHA) Q5Z7J0 GSK4_ORYSJ GSK4 Os06g0547900 LOC_Os06g35530 OsJ_21630 OSJNBa0016D02.31 FUNCTION: Probable serine-threonine kinase that may regulate brassinosteroid signaling. {ECO:0000250|UniProtKB:Q60EZ2}. ENOG411E2A4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0633066 protein,Os02g0632100 protein,Os01g0364400 protein,Os01g0365000 protein,Os02g0632800 protein,Os05g0135100 protein,Os02g0632900 protein A0A0P0VM30,A0A0P0VM78,A0A0P0V2G9,A0A0P0V2L8,A0A0P0VMB6,A0A0P0WHS6,A0A0P0VM60 A0A0P0VM30_ORYSJ,A0A0P0VM78_ORYSJ,A0A0P0V2G9_ORYSJ,A0A0P0V2L8_ORYSJ,A0A0P0VMB6_ORYSJ,A0A0P0WHS6_ORYSJ,A0A0P0VM60_ORYSJ Os02g0633066 OSNPB_020633066,Os02g0632100 OSNPB_020632100,Os01g0364400 OSNPB_010364400,Os01g0365000 OSNPB_010365000,Os02g0632800 OSNPB_020632800,Os05g0135100 OSNPB_050135100,Os02g0632900 OSNPB_020632900 ENOG411E2A5 HAT14 P46665,A0A1P8BFV4 HAT14_ARATH,A0A1P8BFV4_ARATH Homeobox-leucine zipper protein HAT14 (Homeodomain-leucine zipper protein HAT14) (HD-ZIP protein 14),Homeobox leucine zipper protein FUNCTION: Probable transcription factor. {ECO:0000250}. 37603,30660 Homeobox-leucine zipper protein HAT14 (Homeodomain-leucine zipper protein HAT14) (HD-ZIP protein 14),Homeobox leucine zipper protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2170194; AT5G06710 Homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX27 (HD-ZIP protein HOX27) (Homeodomain transcription factor HOX27) (OsHox27),Homeobox-leucine zipper protein HOX11 (HD-ZIP protein HOX11) (Homeodomain transcription factor HOX11) (OsHox11),Os09g0447000 protein (Fragment),Os08g0465000 protein Q6YPD0,Q67UE2,A0A0P0XP22,A0A0P0XHH1 HOX27_ORYSJ,HOX11_ORYSJ,A0A0P0XP22_ORYSJ,A0A0P0XHH1_ORYSJ HOX27 Os08g0465000 LOC_Os08g36220 OSJNOa174H12.5,HOX11 Os09g0447000 LOC_Os09g27450 OJ1596_C06.7 OsJ_028406,Os09g0447000 OSNPB_090447000,Os08g0465000 OSNPB_080465000 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E2A2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411E2A3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os04g0213700 protein,Os11g0652600 protein (Fragment),Os07g0447000 protein (Fragment),Os11g0650250 protein A0A0N7KIN9,A0A0P0Y4X5,A0A0P0X5K2,A0A0P0Y4U4 A0A0N7KIN9_ORYSJ,A0A0P0Y4X5_ORYSJ,A0A0P0X5K2_ORYSJ,A0A0P0Y4U4_ORYSJ Os04g0213700 OSNPB_040213700,Os11g0652600 OSNPB_110652600,Os07g0447000 OSNPB_070447000,Os11g0650250 OSNPB_110650250 ENOG411E2A0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E2A1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 family protein, expressed (Os10g0139700 protein) (Putative cytochrome P450) (cDNA clone:J013107H17, full insert sequence) Q7XGZ5 Q7XGZ5_ORYSJ LOC_Os10g05020 Os10g0139700 OSJNBa0029P06.11 OSNPB_100139700 ENOG411E2A8 T16K5.240 Q9M2W9,A0A1I9LR96 Q9M2W9_ARATH,A0A1I9LR96_ARATH At3g49890 (Uncharacterized protein T16K5.240),Uncharacterized protein 24471,27715 At3g49890 (Uncharacterized protein T16K5.240),Uncharacterized protein locus:2097385; AT3G49890 NA Expressed protein (Os03g0201200 protein) (cDNA clone:J023025I16, full insert sequence),Os03g0201200 protein (Fragment) Q10QC9,A0A0P0VUC5 Q10QC9_ORYSJ,A0A0P0VUC5_ORYSJ Os03g0201200 LOC_Os03g10410 Os03g0201200 OsJ_09810 OSNPB_030201200,Os03g0201200 OSNPB_030201200 ENOG411E2A9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E098 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA malic enzyme NA NA NA NA NA NA NA ENOG411E099 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0166900 protein (Putative receptor protein kinase PERK1) (cDNA clone:001-016-E12, full insert sequence) Q5VRQ7 Q5VRQ7_ORYSJ Os06g0166900 Os06g0166900 OsJ_20258 OSJNBa0015I14.45 OSNPB_060166900 P0680A03.19 ENOG411E090 Q9FJ40 GDL86_ARATH GDSL esterase/lipase At5g45960 (EC 3.1.1.-) (Extracellular lipase At5g45960) ARA:AT5G45960-MONOMER; 3.1.1.- 42482 GDSL esterase/lipase At5g45960 (EC 3.1.1.-) (Extracellular lipase At5g45960) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2152435; AT5G45960 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411E091 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF629) Os11g0577700 protein,Os11g0598900 protein C7J8E0,A0A0P0Y416 C7J8E0_ORYSJ,A0A0P0Y416_ORYSJ Os11g0577700 OSNPB_110577700,Os11g0598900 OSNPB_110598900 ENOG411E092 CNGC1 O65717 CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic nucleotide- and calmodulin-regulated ion channel 1) DISRUPTION PHENOTYPE: Plants exhibit an improved tolerance to Pb(2+). {ECO:0000269|PubMed:11115134}. FUNCTION: Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). {ECO:0000269|PubMed:11115134, ECO:0000269|PubMed:11842144}. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 83097 Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic nucleotide- and calmodulin-regulated ion channel 1) integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; ion channel activity [GO:0005216]; regulation of membrane potential [GO:0042391] TISSUE SPECIFICITY: Expressed in the whole plant but only weakly in roots. locus:2163776; AT5G53130 cyclic nucleotide-gated ion channel Os06g0527100 protein (Putative cyclic nucleotide-gated calmodulin-binding ion channel),Os02g0255000 protein (Putative cyclic nucleotide-gated calmodulin-binding ion channel),Os02g0255000 protein (Fragment),Os06g0527300 protein (Fragment) Q652Z5,Q6EN46,A0A0N7KF13,A0A0P0WX94 Q652Z5_ORYSJ,Q6EN46_ORYSJ,A0A0N7KF13_ORYSJ,A0A0P0WX94_ORYSJ Os06g0527100 Os06g0527100 OSJNBa0043B22.29 OSNPB_060527100 P0001B01.9,OSJNBa0052K15.13-1 Os02g0255000 OSNPB_020255000,Os02g0255000 OSNPB_020255000,Os06g0527300 OSNPB_060527300 ENOG411E093 FBX6 Q9FZK1 FBX6_ARATH F-box only protein 6 52822 F-box only protein 6 ubiquitin-protein transferase activity [GO:0004842]; leaf vascular tissue pattern formation [GO:0010305]; regulation of auxin mediated signaling pathway [GO:0010928]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]; simple leaf morphogenesis [GO:0060776] locus:2015974; AT1G27340 F-box only protein Os01g0923900 protein (Putative fimbriata) (cDNA, clone: J065176G22, full insert sequence) Q5JJQ2 Q5JJQ2_ORYSJ Os01g0923900 Os01g0923900 OSNPB_010923900 P0592G05.24 ENOG411E094 IAA9,IAA8 Q38827,Q38826,F4IKE9,F4IKE6,F4JXI3 IAA9_ARATH,IAA8_ARATH,F4IKE9_ARATH,F4IKE6_ARATH,F4JXI3_ARATH Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9),Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8),Auxin-responsive protein FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 36405,35118,34950,37027,36263 Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9),Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8),Auxin-responsive protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; negative regulation of lateral root development [GO:1901332]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; lateral root formation [GO:0010311]; negative regulation of lateral root development [GO:1901332]; negative regulation of transcription, DNA-templated [GO:0045892]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in the whole plant. {ECO:0000269|PubMed:7658471}. locus:2169955;,locus:2065994; AT5G65670,AT2G22670 auxin-responsive protein NA NA NA NA NA NA NA ENOG411E095 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NPH3 family Os08g0130600 protein (Putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein) Q7EZR6 Q7EZR6_ORYSJ P0582D05.131 Os08g0130600 OSJNBb0009H02.1 OSNPB_080130600 ENOG411E096 PHYL1.1 Q9SN26 PHL11_ARATH Phytolongin Phyl1.1 FUNCTION: Non-SNARE longin protein involved in membrane-trafficking machinery. {ECO:0000305|PubMed:19889231}. 28361 Phytolongin Phyl1.1 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906] locus:2124705; AT4G10170 VAMP-like protein Os08g0110300 protein (Zinc finger (C3HC4-type RING finger) protein family-like) (cDNA clone:J013102A15, full insert sequence) Q6ZC59 Q6ZC59_ORYSJ Os08g0110300 Os08g0110300 OsJ_25783 OSNPB_080110300 P0007D08.29 ENOG411E097 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: synthetase Os05g0447580 protein (Fragment) A0A0P0WMZ2 A0A0P0WMZ2_ORYSJ Os05g0447580 OSNPB_050447580 ENOG411E09H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA beta-amylase Beta-amylase (EC 3.2.1.2) Q5NB81 Q5NB81_ORYSJ P0708G02.35 Os01g0236800 OSNPB_010236800 ENOG411E09I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 family protein, expressed (Os03g0658800 protein) (cDNA clone:J013002I04, full insert sequence),Os10g0179200 protein,Os03g0658800 protein,Os03g0658000 protein,Os12g0286300 protein Q10FR4,A0A0P0XTA7,A0A0P0W1H1,A0A0P0W1M6,A0A0P0Y988 Q10FR4_ORYSJ,A0A0P0XTA7_ORYSJ,A0A0P0W1H1_ORYSJ,A0A0P0W1M6_ORYSJ,A0A0P0Y988_ORYSJ LOC_Os03g45619 Os03g0658800 OSNPB_030658800,Os10g0179200 OSNPB_100179200,Os03g0658800 OSNPB_030658800,Os03g0658000 OSNPB_030658000,Os12g0286300 OSNPB_120286300 ENOG411E09J PME11,PE11 Q9SIJ9,A0A1P8AZ45 PME11_ARATH,A0A1P8AZ45_ARATH Putative pectinesterase 11 (PE 11) (EC 3.1.1.11) (Pectin methylesterase 11) (AtPME11),Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589}. ARA:AT2G21610-MONOMER; 3.1.1.11 39058,39609 Putative pectinesterase 11 (PE 11) (EC 3.1.1.11) (Pectin methylesterase 11) (AtPME11),Pectinesterase (EC 3.1.1.11) cell wall [GO:0005618]; integral component of membrane [GO:0016021]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] locus:2049344; AT2G21610 pectinesterase Pectinesterase (EC 3.1.1.11) Q0JL04 Q0JL04_ORYSJ Os01g0634600 Os01g0634600 OSNPB_010634600 ENOG411E09K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Possible lysine decarboxylase Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5 (EC 3.2.2.n1) (Protein LONELY GUY-like 5) Q84M85 LOGL5_ORYSJ LOGL5 Os03g0857900 LOC_Os03g64070 OsJ_23804 OSJNBa0059G06.12 FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}. ENOG411E09M PAP20 Q9LXI7 PPA20_ARATH Probable purple acid phosphatase 20 (EC 3.1.3.2) ARA:AT3G52780-MONOMER; 3.1.3.2 48462 Probable purple acid phosphatase 20 (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2083288; AT3G52780 Purple acid phosphatase Os11g0151800 protein (cDNA, clone: J075119H10, full insert sequence),Purple acid phosphatase (EC 3.1.3.2) Q0IUK0,Q2QXM4 Q0IUK0_ORYSJ,Q2QXM4_ORYSJ Os11g0151800 Os11g0151800 OSNPB_110151800,LOC_Os12g05540 Os12g0151000 OSNPB_120151000 ENOG411E09N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0483600 protein (cDNA clone:J013032L02, full insert sequence),Os08g0483600 protein (Fragment) Q6YTU2,A0A0P0XHA3 Q6YTU2_ORYSJ,A0A0P0XHA3_ORYSJ P0419H09.2-1 OJ1111_H02.21-1 Os08g0483600 OSNPB_080483600,Os08g0483600 OSNPB_080483600 ENOG411E09A Q5XEV6 Q5XEV6_ARATH At4g24090 (Homer protein) 33640 At4g24090 (Homer protein) integral component of membrane [GO:0016021] locus:2135011; AT4G24090 NA Os09g0529350 protein A0A0P0XQV0 A0A0P0XQV0_ORYSJ Os09g0529350 OSNPB_090529350 ENOG411E09B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 13 (OsMADS13) (RMADS206) Q2QW53 MAD13_ORYSJ MADS13 MAF1 Os12g0207000 LOC_Os12g10540 OsJ_35557 FUNCTION: Probable transcription factor. ENOG411E09C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3444) Heat shock protein-like (Os01g0923800 protein) Q8RYF9 Q8RYF9_ORYSJ Os01g0923800 OsJ_04594 OSNPB_010923800 P0592G05.23 ENOG411E09D Q8VY70 Q8VY70_ARATH Dimethylallyl, adenosine tRNA methylthiotransferase (Uncharacterized protein At1g62780) 27219 Dimethylallyl, adenosine tRNA methylthiotransferase (Uncharacterized protein At1g62780) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; transferase activity [GO:0016740] locus:2026247; AT1G62780 NA OSJNBb0004G23.6 protein (OSJNBb0085F13.1 protein) (Os04g0105700 protein) (cDNA clone:001-034-H11, full insert sequence) (cDNA clone:006-305-C04, full insert sequence) (cDNA clone:006-309-C07, full insert sequence) (cDNA clone:006-310-D01, full insert sequence) (cDNA clone:J013001L09, full insert sequence) Q84VC9 Q84VC9_ORYSJ Os04g0105700 Os04g0105700 OsJ_13513 OSJNBb0004G23.6 OSJNBb0085F13.1 OSNPB_040105700 ENOG411E09E FSD3 Q9FMX0 SODF3_ARATH Superoxide dismutase [Fe] 3, chloroplastic (EC 1.15.1.1) (Protein FE SUPEROXIDE DISMUTASE 3) DISRUPTION PHENOTYPE: Pale green phenotype. Abnormal plastids, highly vacuolated and without internal membrane structures like thylakoids. {ECO:0000269|PubMed:18996978}. FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). Plays important role in chloroplast development, particularly in the maintenance of thylakoids membranes. Seems to act as a heterodimer with FSD2. {ECO:0000250, ECO:0000269|PubMed:18996978}. 1.15.1.1 30360 Superoxide dismutase [Fe] 3, chloroplastic (EC 1.15.1.1) (Protein FE SUPEROXIDE DISMUTASE 3) chloroplast [GO:0009507]; chloroplast nucleoid [GO:0042644]; chloroplast thylakoid [GO:0009534]; nucleoid [GO:0009295]; plastid nucleoid [GO:0042646]; thylakoid [GO:0009579]; metal ion binding [GO:0046872]; superoxide dismutase activity [GO:0004784]; oxidation-reduction process [GO:0055114] locus:2166953; AT5G23310 Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) Superoxide dismutase [Fe] 2, chloroplastic (EC 1.15.1.1) (Iron-superoxide dismutase) Q5VSB7 SODF2_ORYSJ Os06g0143000 LOC_Os06g05110 P0535G04.31 FUNCTION: Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. {ECO:0000269|PubMed:10192910}. ENOG411E09F BTAF1,RGD3 B5BT18,F4JCU6 BTAF1_ARATH,F4JCU6_ARATH TATA-binding protein-associated factor BTAF1 (AtBTAF1) (EC 3.6.4.-) (Protein BTAF1 homolog) (Protein ROOT GROWTH DEFECTIVE 3),ROOT GROWTH DEFECTIVE 3 DISRUPTION PHENOTYPE: Impaired in root growth and true leaf development. {ECO:0000269|PubMed:19054368}. Unable to regenerate shoots from callus; Phenotype enhanced at high temperature-M. Sugiyama-2009 FUNCTION: Involved in meristem development. Acts as positive regulator of the CUC-STM pathway in shoot apical meristem (SAM) neo-formation. {ECO:0000269|PubMed:19054368}. 3.6.4.- 227055,236590 TATA-binding protein-associated factor BTAF1 (AtBTAF1) (EC 3.6.4.-) (Protein BTAF1 homolog) (Protein ROOT GROWTH DEFECTIVE 3),ROOT GROWTH DEFECTIVE 3 nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; positive regulation of shoot apical meristem development [GO:1902185],ATP binding [GO:0005524] locus:2080310; AT3G54280 Domain of unknown function (DUF3535) Os02g0161300 protein (Fragment) Q0E3P7 Q0E3P7_ORYSJ Os02g0161300 Os02g0161300 OSNPB_020161300 ENOG411E09G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: (RNA) helicase Patatin-like protein 3 (OsPLP3) (EC 3.1.1.-),Os07g0144500 protein Q8H5D4,A0A0N7KMX5 PLP3_ORYSJ,A0A0N7KMX5_ORYSJ PLP3 Os07g0144500 LOC_Os07g05110 OJ1343_B12.121,Os07g0144500 OSNPB_070144500 FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Hydrolyzes phospholipids as well as galactolipids. May play a role in disease resistance (By similarity). {ECO:0000250}. ENOG411E09X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0407900 protein (Serine/threonine-protein kinase NAK, putative, expressed) (cDNA clone:J013145E01, full insert sequence) Q10JU0 Q10JU0_ORYSJ Os03g0407900 LOC_Os03g29410 Os03g0407900 OSNPB_030407900 ENOG411E09Y O22961 O22961_ARATH Cysteine proteinase (Cysteine proteinases superfamily protein) 38267 Cysteine proteinase (Cysteine proteinases superfamily protein) extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2055440; AT2G34080 Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E09Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 Beta-glucosidase 31 (Os9bglu31) (EC 3.2.1.21),Os09g0511600 protein B7F7K7,A0A0P0XPM4 BGL31_ORYSJ,A0A0P0XPM4_ORYSJ BGLU31 Os09g0511600 LOC_Os09g33680 OsJ_29984,Os09g0511600 OSNPB_090511600 ENOG411E09P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromatin assembly factor 1 subunit A Os07g0273301 protein A0A0P0X4B5 A0A0P0X4B5_ORYSJ Os07g0273301 OSNPB_070273301 ENOG411E09Q A0A1I9LS65,F4K2M7,F4K2M8 A0A1I9LS65_ARATH,F4K2M7_ARATH,F4K2M8_ARATH 2-oxoglutarate/Fe(II)-dependent oxygenase family protein,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 7091,60041,61906 2-oxoglutarate/Fe(II)-dependent oxygenase family protein,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein locus:2183249; AT5G19840 transcription factor jumonji Os01g0773200 protein A0A0N7KDU3,A0A0P0V8Q4 A0A0N7KDU3_ORYSJ,A0A0P0V8Q4_ORYSJ Os01g0773200 OSNPB_010773200 ENOG411E09R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANX Annexin A0A0P0X9P6 A0A0P0X9P6_ORYSJ Os07g0659600 OSNPB_070659600 ENOG411E09S Q9C6F6 Q9C6F6_ARATH Uncharacterized protein At1g58120/68103_m00121 (Uncharacterized protein T15M6.13) 48132 Uncharacterized protein At1g58120/68103_m00121 (Uncharacterized protein T15M6.13) locus:2196240; AT1G58120 NA NA NA NA NA NA NA NA ENOG411E09T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411E09U Q8VYV0 Q8VYV0_ARATH At1g43690/F2J6_4 (Ubiquitin interaction motif-containing protein) 65464 At1g43690/F2J6_4 (Ubiquitin interaction motif-containing protein) cytosol [GO:0005829] locus:2031113; AT1G43690 ubiquitin interaction motif-containing protein Os04g0421800 protein (Fragment) Q0JD87 Q0JD87_ORYSJ Os04g0421800 Os04g0421800 OSNPB_040421800 ENOG411E09V MBP2C Q9LEZ4 MBP2C_ARATH Protein MICROTUBULE BINDING PROTEIN 2C (AtMBP2C) (Movement protein binding protein 2C) FUNCTION: Prevents homeodomain proteins (e.g. STM) association to plasmodesmata and, consequently, cell-to-cell transport. Binds to RNA. Alters STM RNA binding capacity (PubMed:17965274). Regulates cytoskeleton (e.g. actin) organization that determinates cell shape (PubMed:8893552, PubMed:19074626). Regulates stomata patterning and drought tolerance (PubMed:19074626). Involved in restricting tobamovirus (e.g. oilseed rape mosaic virus) infectivity, probably by interfering with cell-to-cell virus movement (PubMed:19074626). {ECO:0000269|PubMed:17965274, ECO:0000269|PubMed:19074626, ECO:0000269|PubMed:8893552}. 37349 Protein MICROTUBULE BINDING PROTEIN 2C (AtMBP2C) (Movement protein binding protein 2C) cytoplasm [GO:0005737]; microtubule cytoskeleton [GO:0015630]; RNA binding [GO:0003723]; cortical microtubule organization [GO:0043622]; defense response to virus [GO:0051607]; negative regulation of protein transport [GO:0051224]; plasmodesmata-mediated intercellular transport [GO:0010497]; positive regulation of defense response to virus by host [GO:0002230]; regulation of cytoskeleton organization [GO:0051493]; response to water deprivation [GO:0009414]; stomatal complex patterning [GO:0010375] DEVELOPMENTAL STAGE: In young seedlings, expressed in the vascular tissues of cotyledons, leaf primordia, and shoot apical meristem (SAM). In roots, confined to a limited number of epidermal cells in proximity to the root apical meristem. In flowers, present in carpels and ovules. In developing ovules, observed in the funiculus and integuments. {ECO:0000269|PubMed:17965274}. TISSUE SPECIFICITY: Expressed in seedlings, roots, flowers and developing ovules. {ECO:0000269|PubMed:17965274}. locus:2181534; AT5G08120 binding protein 2c Os06g0284800 protein (Putative TMV-MP30 binding protein 2C) (cDNA clone:J013063G02, full insert sequence) Q5VNF8 Q5VNF8_ORYSJ Os06g0284800 Os06g0284800 OsJ_20991 OSNPB_060284800 P0491D10.27 ENOG411E09W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0203900 protein (cDNA clone:J023019E20, full insert sequence),Os01g0201800 protein,Os01g0201900 protein (Fragment) Q6ATK5,A0A0P0UZD1,A0A0P0V018 Q6ATK5_ORYSJ,A0A0P0UZD1_ORYSJ,A0A0P0V018_ORYSJ Os05g0203900 Os05g0203900 OSJNBa0015G13.9 OSNPB_050203900,Os01g0201800 OSNPB_010201800,Os01g0201900 OSNPB_010201900 ENOG411EE37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease NA NA NA NA NA NA NA ENOG411DZE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TyrKc NA NA NA NA NA NA NA ENOG411E8IZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-binding WIYLD domain NA NA NA NA NA NA NA ENOG411EE39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os06g0703300 protein,Os06g0703300 protein (cDNA clone:001-124-C11, full insert sequence) Q5Z820,Q5Z821 Q5Z820_ORYSJ,Q5Z821_ORYSJ OJ1215_E11.9-2 Os06g0703300 OSNPB_060703300,Os06g0703300 Os06g0703300 OJ1215_E11.9-1 OSNPB_060703300 ENOG411E8IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8IC F4F15.180 Q9SUZ7,Q3EAL3 Q9SUZ7_ARATH,Q3EAL3_ARATH At3g52070 (RNA/RNP complex-1-interacting phosphatase) (Uncharacterized protein F4F15.180),RNA/RNP complex-1-interacting phosphatase 13244,13057 At3g52070 (RNA/RNP complex-1-interacting phosphatase) (Uncharacterized protein F4F15.180),RNA/RNP complex-1-interacting phosphatase integral component of membrane [GO:0016021] locus:2083820; AT3G52070 NA NA NA NA NA NA NA NA ENOG411E8ID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0914300 protein (cDNA clone:001-126-A01, full insert sequence) (cDNA clone:J033130M24, full insert sequence),Os01g0914100 protein Q0JGN6,Q8S077 Q0JGN6_ORYSJ,Q8S077_ORYSJ Os01g0914300 Os01g0914300 OsJ_04523 OSNPB_010914300,Os01g0914100 Os01g0914100 OSNPB_010914100 P0004D12.4 P0470A12.51 ENOG411E9VP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411E9VQ XTH5,XTH4 Q9XIW1,Q39099,A0A1P8B288 XTH5_ARATH,XTH4_ARATH,A0A1P8B288_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 (At-XTH5) (XTH-5) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 4 (At-XTH4) (XTH-4) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ARA:AT5G13870-MONOMER;,ARA:AT2G06850-MONOMER; 2.4.1.207 33949,34291,27550 Probable xyloglucan endotransglucosylase/hydrolase protein 5 (At-XTH5) (XTH-5) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 4 (At-XTH4) (XTH-4) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; response to auxin [GO:0009733]; response to low light intensity stimulus [GO:0009645]; response to mechanical stimulus [GO:0009612]; unidimensional cell growth [GO:0009826]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Root specific. {ECO:0000269|PubMed:10557219, ECO:0000269|PubMed:11673616}.,TISSUE SPECIFICITY: Predominantly expressed in young developing tissues. Expressed in 7 day old seedlings, roots, nodes bearing flowers, flower buds and siliques. {ECO:0000269|PubMed:10557219}. locus:2159118;,locus:2065821; AT5G13870,AT2G06850 endoxyloglucan transferase NA NA NA NA NA NA NA ENOG411E9VR A0A1P8B124,F4IPZ8 A0A1P8B124_ARATH,F4IPZ8_ARATH TRIO/F-actin-binding protein 53606,57223 TRIO/F-actin-binding protein locus:2061768; AT2G37070 NA NA NA NA NA NA NA NA ENOG411E9VU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9VV SRS6 Q9M2U4 SRS6_ARATH Protein SHI RELATED SEQUENCE 6 FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. 20326 Protein SHI RELATED SEQUENCE 6 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275] locus:2096169; AT3G54430 Domain of unknown function (DUF702) NA NA NA NA NA NA NA ENOG411E9VX Q9FGD5 Q9FGD5_ARATH Emb|CAB16785.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein) 97349 Emb|CAB16785.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein) plasma membrane [GO:0005886]; plastid [GO:0009536]; transferase activity [GO:0016740] locus:2158088; AT5G66950 Inherit from KOG: Molybdenum cofactor sulfurase NA NA NA NA NA NA NA ENOG411E9VY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0609700 protein A0A0P0Y4K2 A0A0P0Y4K2_ORYSJ Os11g0609700 OSNPB_110609700 ENOG411E9VZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411E9VA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0162200 protein A0A0P0UYL5 A0A0P0UYL5_ORYSJ Os01g0162200 OSNPB_010162200 ENOG411E9VB RPS15F Q9FML6 RS156_ARATH 40S ribosomal protein S15-6 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 18576 40S ribosomal protein S15-6 cytosolic small ribosomal subunit [GO:0022627]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] locus:2161952; AT5G63070 Ribosomal protein S19 NA NA NA NA NA NA NA ENOG411E9VC ALY2,ALY1 Q6A333,Q6A331 ALY2_ARATH,ALY1_ARATH Protein ALWAYS EARLY 2 (AtALY2),Protein ALWAYS EARLY 1 (AtALY1) 117780,109087 Protein ALWAYS EARLY 2 (AtALY2),Protein ALWAYS EARLY 1 (AtALY1) nucleus [GO:0005634]; transcriptional repressor complex [GO:0017053]; DNA binding [GO:0003677]; cell cycle [GO:0007049]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}. locus:2079747;,locus:2143666; AT3G05380,AT5G27610 chromatin binding NA NA NA NA NA NA NA ENOG411E9VD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0198800 protein (Fragment) A0A0P0XCU7 A0A0P0XCU7_ORYSJ Os08g0198800 OSNPB_080198800 ENOG411E9VF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os11g0143600 protein,Os12g0139700 protein A0A0P0XYX0,A0A0P0Y6Q9 A0A0P0XYX0_ORYSJ,A0A0P0Y6Q9_ORYSJ Os11g0143600 OSNPB_110143600,Os12g0139700 OSNPB_120139700 ENOG411E9VG BHLH27 Q700E3,A0A1P8B6L1,A0A1P8B6K8 BH027_ARATH,A0A1P8B6L1_ARATH,A0A1P8B6K8_ARATH Transcription factor bHLH27 (Basic helix-loop-helix protein 27) (AtbHLH27) (bHLH 27) (Transcription factor EN 42) (bHLH transcription factor bHLH027),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 30280,26173,26745 Transcription factor bHLH27 (Basic helix-loop-helix protein 27) (AtbHLH27) (bHLH 27) (Transcription factor EN 42) (bHLH transcription factor bHLH027),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2123954; AT4G29930 basic helix-loop-helix (bHLH) family protein NA NA NA NA NA NA NA ENOG411E9VH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain MYB-related transcription factor (Os05g0589400 protein) (Putative myb transcription factor) (cDNA clone:006-205-B05, full insert sequence) (cDNA clone:J013154K05, full insert sequence) Q6I5E6 Q6I5E6_ORYSJ Os05g0589400 Os05g0589400 OSJNBa0022J22.2 OSNPB_050589400 ENOG411E9VI A0A1P8BCW9,F4JZP8 A0A1P8BCW9_ARATH,F4JZP8_ARATH Plant self-incompatibility protein S1 family 49969,44058 Plant self-incompatibility protein S1 family locus:2180607; AT5G26090 NA NA NA NA NA NA NA NA ENOG411E9VJ Q680D9,Q1PDT6,F4JWT6 Y5475_ARATH,Y5547_ARATH,F4JWT6_ARATH B3 domain-containing protein At5g25475,B3 domain-containing protein At5g25470,AP2/B3-like transcriptional factor family protein 32292,32023,37206 B3 domain-containing protein At5g25475,B3 domain-containing protein At5g25470,AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2179464;,locus:505006638; AT5G25475,AT5G25470 B3 NA NA NA NA NA NA NA ENOG411E9VK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9VM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os11g0618000 protein,Expressed protein (Os10g0450400 protein) (cDNA clone:001-131-B04, full insert sequence),Os11g0618500 protein,Os11g0617200 protein,Os11g0619601 protein,Os11g0618850 protein,Os11g0618700 protein (Fragment),Os11g0619500 protein,Os11g0619701 protein B9G8K5,Q7XDV5,A0A0N7KT81,A0A0N7KT80,A0A0N7KT82,A0A0P0Y4P5,A0A0P0Y4E0,A0A0P0Y561,A0A0P0Y4J4 B9G8K5_ORYSJ,Q7XDV5_ORYSJ,A0A0N7KT81_ORYSJ,A0A0N7KT80_ORYSJ,A0A0N7KT82_ORYSJ,A0A0P0Y4P5_ORYSJ,A0A0P0Y4E0_ORYSJ,A0A0P0Y561_ORYSJ,A0A0P0Y4J4_ORYSJ Os11g0618000 OsJ_34638 OSNPB_110618000,LOC_Os10g31290 Os10g0450400 OsJ_31728 OSNPB_100450400,Os11g0618500 OSNPB_110618500,Os11g0617200 OSNPB_110617200,Os11g0619601 OSNPB_110619601,Os11g0618850 OSNPB_110618850,Os11g0618700 OSNPB_110618700,Os11g0619500 OSNPB_110619500,Os11g0619701 OSNPB_110619701 ENOG411E9VN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E9V0 Q94BQ6,B9DFN3,F4I3X3 Q94BQ6_ARATH,B9DFN3_ARATH,F4I3X3_ARATH Neurofilament heavy protein (Uncharacterized protein At1g70100),AT1G70100 protein (Neurofilament heavy protein),Neurofilament heavy protein 51989,53480,55970 Neurofilament heavy protein (Uncharacterized protein At1g70100),AT1G70100 protein (Neurofilament heavy protein),Neurofilament heavy protein locus:2020623; AT1G70100 NA NA NA NA NA NA NA NA ENOG411E9V1 ESP Q8RY71,A0A1P8ARA7 ESP_ARATH,A0A1P8ARA7_ARATH Epithiospecifier protein (AtESP) (Protein EPITHIOSPECIFYING SENESCENCE REGULATOR) (AtESR),Epithiospecifier protein DISRUPTION PHENOTYPE: Accelerated leaf senescence and increased pathogen damages. {ECO:0000269|PubMed:17369373}. Abnormal glucosinolate composition-F. Ausubel-2001 FUNCTION: Converts glucosinolates both to epithionitriles and to simple nitriles in the presence of myrosinase. Promotes the formation of epithionitriles after hydrolysis of alkenylglucosinolates containing a terminal double bond. Mediates indol-3-acetonitrile (IACN) production from indol-3-ylmethyl glucosinolate. Acts as a negative regulator of senescence. {ECO:0000269|PubMed:11752388, ECO:0000269|PubMed:15845404, ECO:0000269|PubMed:17061170, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:17920088}. MISCELLANEOUS: ESP is functional in cv. Landsberg erecta while the gene encoding the protein is not expressed in cv. Columbia, cv. Da(1)-12 and cv. Ru-0. ESP activity is regulated at the transcriptional, the post-transcriptional and the post-translational levels.; MISCELLANEOUS: Not dependent on the presence of Fe(2+) although supplemental Fe(2+) increases nitriles formation. ARA:AT1G54040-MONOMER;MetaCyc:AT1G54040-MONOMER; 37008,36339 Epithiospecifier protein (AtESP) (Protein EPITHIOSPECIFYING SENESCENCE REGULATOR) (AtESR),Epithiospecifier protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; enzyme regulator activity [GO:0030234]; defense response to bacterium [GO:0042742]; glucosinolate catabolic process [GO:0019762]; leaf senescence [GO:0010150]; response to jasmonic acid [GO:0009753] TISSUE SPECIFICITY: Expressed in epidermal cells of all above-ground organs except the anthers, in cambial cells of leaf and stem vascular bundles, and in glucosinolates rich S-cells found in stems just below the inflorescence. Absent from roots. {ECO:0000269|PubMed:17390109}. locus:2014400; AT1G54040 epithiospecifier NA NA NA NA NA NA NA ENOG411E9V2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Elp3 NA NA NA NA NA NA NA ENOG411E9V3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Pfam:DUF231 Os10g0254720 protein,Os01g0495200 protein C7J7A2,A0A0N7KD08 C7J7A2_ORYSJ,A0A0N7KD08_ORYSJ Os10g0254720 OSNPB_100254720,Os01g0495200 OSNPB_010495200 ENOG411E9V4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411E9V5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAG domain BAG domain containing protein, expressed (Os11g0506800 protein) Q2R3R2 Q2R3R2_ORYSJ LOC_Os11g31060 Os11g0506800 OsJ_33995 OSNPB_110506800 ENOG411E9V6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9V7 ATL31,ATL6 Q8LGA5,Q8RXX9 ATL31_ARATH,ATL6_ARATH E3 ubiquitin-protein ligase ATL31 (EC 2.3.2.27) (Protein CARBON/NITROGEN INSENSITIVE 1) (Protein SUPER SURVIVAL 1) (RING-H2 finger protein ATL31) (RING-type E3 ubiquitin transferase ATL31),E3 ubiquitin-protein ligase ATL6 (EC 2.3.2.27) (RING-H2 finger protein ATL6) (RING-type E3 ubiquitin transferase ATL6) DISRUPTION PHENOTYPE: Hypersensitivity to C/N conditions during post-germinative growth. {ECO:0000269|PubMed:19702666}. Sensitive to nitrogen starvation and glucose-J. Yamaguchi-2009 FUNCTION: E3 ubiquitin-protein ligase that is required for the plant C/N response during seedling growth transition. May be involved in the early steps of the plant defense signaling pathway. {ECO:0000269|PubMed:19702666, ECO:0000269|Ref.8}.,FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the plant C/N response and the early steps of the plant defense signaling pathway. {ECO:0000269|PubMed:15644464, ECO:0000269|Ref.12}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 40291,43274 E3 ubiquitin-protein ligase ATL31 (EC 2.3.2.27) (Protein CARBON/NITROGEN INSENSITIVE 1) (Protein SUPER SURVIVAL 1) (RING-H2 finger protein ATL31) (RING-type E3 ubiquitin transferase ATL31),E3 ubiquitin-protein ligase ATL6 (EC 2.3.2.27) (RING-H2 finger protein ATL6) (RING-type E3 ubiquitin transferase ATL6) integral component of membrane [GO:0016021]; membrane [GO:0016020]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; cellular response to nitrogen levels [GO:0043562]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response, incompatible interaction [GO:0009814]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response, incompatible interaction [GO:0009814]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; response to chitin [GO:0010200] locus:2146330;,locus:2096309; AT5G27420,AT3G05200 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E9V8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ras-related protein RABC2a-like NA NA NA NA NA NA NA ENOG411E9V9 IMPA7 Q9M9X7 IMPA7_ARATH Importin subunit alpha-7 (IMPa-7) FUNCTION: Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity). Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium, but is not essential for Agrobacterium-mediated root transformation (PubMed:18836040). {ECO:0000250|UniProtKB:Q96321, ECO:0000269|PubMed:18836040}. 58473 Importin subunit alpha-7 (IMPa-7) cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607] locus:2078122; AT3G05720 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (By similarity) NA NA NA NA NA NA NA ENOG411EEKB Q9LQA9,Q1PFF2 Q9LQA9_ARATH,Q1PFF2_ARATH Eukaryotic aspartyl protease family protein (F4N2.8),Aspartyl protease family protein (Eukaryotic aspartyl protease family protein) 41880,40996 Eukaryotic aspartyl protease family protein (F4N2.8),Aspartyl protease family protein (Eukaryotic aspartyl protease family protein) aspartic-type endopeptidase activity [GO:0004190],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2033258; AT1G69100 Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411EE3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec23/Sec24 beta-sandwich domain NA NA NA NA NA NA NA ENOG411EE3I CHR34 Q9SJT3,A0A1P8B2G7,A0A1P8B2G9,A0A1P8B2I9 Q9SJT3_ARATH,A0A1P8B2G7_ARATH,A0A1P8B2G9_ARATH,A0A1P8B2I9_ARATH Chromatin remodeling 34 (Uncharacterized protein At2g21450),SNF2 domain CLASSY-like protein,Chromatin remodeling 34 93298,23307,82910,94100 Chromatin remodeling 34 (Uncharacterized protein At2g21450),SNF2 domain CLASSY-like protein,Chromatin remodeling 34 ATP binding [GO:0005524] locus:2050039; AT2G21450 Type III restriction enzyme res subunit NA NA NA NA NA NA NA ENOG411EHES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0203000 protein,Os10g0432001 protein (Fragment),Os02g0670200 protein (Fragment),Os07g0495175 protein (Fragment) A0A0P0WU94,A0A0P0XV33,A0A0N7KFU9,A0A0P0X5V5 A0A0P0WU94_ORYSJ,A0A0P0XV33_ORYSJ,A0A0N7KFU9_ORYSJ,A0A0P0X5V5_ORYSJ Os06g0203000 OSNPB_060203000,Os10g0432001 OSNPB_100432001,Os02g0670200 OSNPB_020670200,Os07g0495175 OSNPB_070495175 ENOG411EFG5 Q8L983,F4JJW8 Q8L983_ARATH,F4JJW8_ARATH At4g33980,Uncharacterized protein 24606,26172 At4g33980,Uncharacterized protein nucleus [GO:0005634]; photoperiodism, flowering [GO:0048573]; regulation of circadian rhythm [GO:0042752]; response to cold [GO:0009409]; response to karrikin [GO:0080167] locus:2118959; AT4G33980 NA NA NA NA NA NA NA NA ENOG411EFG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os08g0334300 protein A0A0P0XEE0 A0A0P0XEE0_ORYSJ Os08g0334300 OSNPB_080334300 ENOG411EFG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os08g0288600 protein,Os07g0661150 protein,Os02g0685500 protein,Os02g0678100 protein B9G038,A0A0P0XA09,A0A0P0VN26,A0A0P0VN15 B9G038_ORYSJ,A0A0P0XA09_ORYSJ,A0A0P0VN26_ORYSJ,A0A0P0VN15_ORYSJ Os08g0288600 OsJ_26759 OSNPB_080288600,Os07g0661150 OSNPB_070661150,Os02g0685500 OSNPB_020685500,Os02g0678100 OSNPB_020678100 ENOG411EFG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0591401 protein,Os11g0201480 protein A0A0P0WE58,A0A0P0XZU5 A0A0P0WE58_ORYSJ,A0A0P0XZU5_ORYSJ Os04g0591401 OSNPB_040591401,Os11g0201480 OSNPB_110201480 ENOG411EFG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0512300 protein,Os11g0558000 protein,Os06g0523500 protein,Os11g0529700 protein,Os05g0377300 protein,Os06g0354800 protein A3CHU0,A3CCC5,A3BC95,Q2R3A6,B9FHT4,A0A0P0WWF2 A3CHU0_ORYSJ,A3CCC5_ORYSJ,A3BC95_ORYSJ,Q2R3A6_ORYSJ,B9FHT4_ORYSJ,A0A0P0WWF2_ORYSJ Os12g0512300 OsJ_36268 OSNPB_120512300,Os11g0558000 OsJ_34260 OSNPB_110558000,Os06g0523500 OsJ_21525 OSNPB_060523500,Os11g0529700 LOC_Os11g32600 OsJ_34105 OSNPB_110529700,Os05g0377300 OsJ_18345 OSNPB_050377300,Os06g0354800 OSNPB_060354800 ENOG411EFG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFG3 A0A1P8B399 A0A1P8B399_ARATH Transmembrane protein 27025 Transmembrane protein integral component of membrane [GO:0016021] NA NA NA NA NA NA NA NA ENOG411EFG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Has 40 Blast hits to 40 proteins in 1 species Archae - 0 NA NA NA NA NA NA NA ENOG411EFG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) Os05g0556600 protein (Fragment) A0A0P0WPT8 A0A0P0WPT8_ORYSJ Os05g0556600 OSNPB_050556600 ENOG411EFGD Q9SK90 Q9SK90_ARATH At1g22480 (Blue copper protein-like predicted GPI-anchored protein) (Cupredoxin superfamily protein) (Similar to blue copper protein) 17641 At1g22480 (Blue copper protein-like predicted GPI-anchored protein) (Cupredoxin superfamily protein) (Similar to blue copper protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2009552; AT1G22480 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EFGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EFGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0596300 protein A0A0P0Y414 A0A0P0Y414_ORYSJ Os11g0596300 OSNPB_110596300 ENOG411EFGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EFGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0518300 protein A0A0N7KQ54 A0A0N7KQ54_ORYSJ Os08g0518300 OSNPB_080518300 ENOG411EFGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pong sub-class Os11g0514250 protein (Transposon protein, putative, Pong sub-class),Myb protein-like (Os06g0534700 protein),Os07g0575233 protein Q2R3L6,Q5Z5G1,A0A0P0X8A8 Q2R3L6_ORYSJ,Q5Z5G1_ORYSJ,A0A0P0X8A8_ORYSJ Os11g0514250 LOC_Os11g31510 OSNPB_110514250,Os06g0534700 OSJNBa0001B21.12 OSNPB_060534700 P0506C10.37,Os07g0575233 OSNPB_070575233 ENOG411EFGU Q9LZN1 Q9LZN1_ARATH Uncharacterized protein T7H20_50 16107 Uncharacterized protein T7H20_50 locus:2185138; AT5G02000 NA NA NA NA NA NA NA NA ENOG411EFGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EFGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EFGR LBD7 Q9SSM9 LBD7_ARATH LOB domain-containing protein 7 (ASYMMETRIC LEAVES 2-like protein 31) (AS2-like protein 31) 24846 LOB domain-containing protein 7 (ASYMMETRIC LEAVES 2-like protein 31) (AS2-like protein 31) locus:2032647; AT1G72980 LOB domain-containing protein 7 NA NA NA NA NA NA NA ENOG411EFGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Transcription factor TB1 (Protein FINE CULM 1) (Protein TEOSINTE BRANCHED 1 homolog) (OsTB1) (TCP transcription factor 8) (OsTCP8) Q8LN68 TB1_ORYSJ TB1 FC1 TCP8 Os03g0706500 LOC_Os03g49880 DISRUPTION PHENOTYPE: Increased lateral branching. {ECO:0000269|PubMed:12581309}. FUNCTION: Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. MISCELLANEOUS: Plants over-expressing TB1 exhibit markedly reduced lateral branching, but normal propagation of axillary buds. {ECO:0000269|PubMed:12581309}. ENOG411DXYM DTX50 Q9FJ87 DTX50_ARATH Protein DETOXIFICATION 50 (AtDTX50) (DETOXIFICATION EFFLUX CARRIER 50) (Multidrug and toxic compound extrusion protein 50) (MATE protein 50) (Protein ABNORMAL SHOOT 3-like 1) DISRUPTION PHENOTYPE: Smaller and yellowish rosette leaves. Enhanced sensitivity to abscisic acid (ABA) in growth inhibition and seed germination. Accumulation of ABA in leaves. Enhanced tolerance to drought with lower stomatal conductance. {ECO:0000269|PubMed:24851876}. FUNCTION: Functions as a multidrug and toxin extrusion transporter in the export of abscisic acid (ABA) in guard cells. Plays a role in ABA-mediated growth inhibition and responses to drought conditions (PubMed:24851876). May act as a negative regulator of hypocotyl cell elongation in the light (PubMed:26160579). {ECO:0000269|PubMed:24851876, ECO:0000269|PubMed:26160579}. MISCELLANEOUS: Overexpression of DTX50 alters shoot developmental programs leading to a loss of apical dominance phenotype. {ECO:0000269|PubMed:26160579}. R-ATH-425366; 54970 Protein DETOXIFICATION 50 (AtDTX50) (DETOXIFICATION EFFLUX CARRIER 50) (Multidrug and toxic compound extrusion protein 50) (MATE protein 50) (Protein ABNORMAL SHOOT 3-like 1) integral component of membrane [GO:0016021]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; abscisic acid transporter activity [GO:0090440]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; abscisic acid transport [GO:0080168]; drug transmembrane transport [GO:0006855]; regulation of response to water deprivation [GO:2000070]; response to abscisic acid [GO:0009737]; root morphogenesis [GO:0010015] TISSUE SPECIFICITY: Preferentially expressed in rosette leaves. Detected mainly in the vascular tissues and guard cells (PubMed:24851876). Mostly detected at reproductive stages in young anthers, in mature pollens and during pollen germination on the pistil. Also expressed in developing seeds (PubMed:26160579). {ECO:0000269|PubMed:24851876, ECO:0000269|PubMed:26160579}. locus:2173098; AT5G52050 MatE NA NA NA NA NA NA NA ENOG411DXYE A0A1P8B515,A0A1P8B521,F4JG68 A0A1P8B515_ARATH,A0A1P8B521_ARATH,F4JG68_ARATH Methyltransferase 40218,42065,51108 Methyltransferase methyltransferase activity [GO:0008168]; tRNA processing [GO:0008033],tRNA methyltransferase activity [GO:0008175]; tRNA methylation [GO:0030488] locus:2141415; AT4G01880 tRNA guanosine-2'-O-methyltransferase TRM13 homolog tRNA:m(4)X modification enzyme TRM13 (EC 2.1.1.225) (tRNA methylase 13) (OsTRM13) Q10B19 TRM13_ORYSJ TRM13 Os03g0833200 LOC_Os03g61750 OSJNBa0078D06.36 OSJNBa0096I06.32 FUNCTION: tRNA methylase that catalyzes 2'-O-methyladenosine (Am) nucleoside formation on tRNA(Gly)(GCC) in vitro. May 2'-O-methylate cytidine(4) in tRNA(Pro) and tRNA(Gly)(GCC), and adenosine(4) in tRNA(His) (PubMed:28369540). Involved in salt stress tolerance (PubMed:28369540). {ECO:0000269|PubMed:28369540}. MISCELLANEOUS: Seedlings subjected to salt stress and abscisic acid (ABA) treatment exhibit a dramatic increase of 2'-O-methyladenosine (Am) nucleoside (PubMed:28369540). Plants over-expressing TRM13 show improved salt stress tolerance, and plant silencing TRM13 display decreased stress tolerance (PubMed:28369540). {ECO:0000269|PubMed:28369540}. ENOG411DXYC Q9LT72,A0A1I9LLI4 PUS4_ARATH,A0A1I9LLI4_ARATH RNA pseudouridine synthase 4, mitochondrial (EC 5.4.99.-) (RNA pseudouridylate synthase 4) (RNA-uridine isomerase 4),Pseudouridine synthase family protein ARA:AT3G19440-MONOMER; 5.4.99.- 52965,37660 RNA pseudouridine synthase 4, mitochondrial (EC 5.4.99.-) (RNA pseudouridylate synthase 4) (RNA-uridine isomerase 4),Pseudouridine synthase family protein mitochondrion [GO:0005739]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119],pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522] locus:2090689; AT3G19440 RNA pseudourine synthase 4 RNA pseudouridine synthase 4, mitochondrial (EC 5.4.99.-) (RNA pseudouridylate synthase 4) (RNA-uridine isomerase 4) Q69K07 PUS4_ORYSJ Os09g0103500 LOC_Os09g01620 OSJNBa0006G10.3 P0414D03.35 ENOG411DXYB CLPC1 Q9FI56 CLPC1_ARATH Chaperone protein ClpC1, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 1) (Casein lytic proteinase C1) (Protein DE-REGULATED CAO ACCUMULATION 1) (Protein IRON-RESCUED MUTANT 1) DISRUPTION PHENOTYPE: Small plants with chlorotic leaves, aberrant chloroplast biogenesis and inefficient chloroplast import of both photosynthetic and non-photosynthetic preproteins (PubMed:15516497, PubMed:15563614, Ref.11, PubMed:15659100, PubMed:17376159, PubMed:17291312, PubMed:20382967). Clpc1 and clpc2 double mutants are embryo lethal when homozygous (PubMed:17376159). {ECO:0000269|PubMed:15516497, ECO:0000269|PubMed:15563614, ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:17291312, ECO:0000269|PubMed:17376159, ECO:0000269|PubMed:20382967, ECO:0000269|Ref.11}. Decrease in the total chlorophyll content and the chlorophyll a/b ratio compared to wild type.,Chlorophyll contents decreased by approximately 40% compared to the parental line (ch1-1/GFP-CAO).,Significant increase in the expression of the GFP-CAO transgene. Chlorosis; Pale green; Aberrant chloroplast biogenesis-P. Jarvis-2005 FUNCTION: Molecular chaperone that hydrolyzes ATP and is associated with the chloroplast protein import apparatus. May function as the motor for chloroplast protein translocation, as translocation requires ATP hydrolysis in the stroma. May interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast. Involved in the regulation of chlorophyll b biosynthesis through the destabilization of chlorophyllide a oxygenase (CAO) protein in response to the accumulation of chlorophyll b. Involved in leaf iron homeostasis. {ECO:0000269|PubMed:15304652, ECO:0000269|PubMed:15516497, ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:17291312, ECO:0000269|PubMed:17376159, ECO:0000269|PubMed:20382967, ECO:0000269|PubMed:22353577, ECO:0000269|PubMed:24599948}. 103453 Chaperone protein ClpC1, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 1) (Casein lytic proteinase C1) (Protein DE-REGULATED CAO ACCUMULATION 1) (Protein IRON-RESCUED MUTANT 1) cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; mitochondrion [GO:0005739]; plastid [GO:0009536]; plastid stroma [GO:0009532]; Tic complex [GO:0031897]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; chloroplast organization [GO:0009658]; protein import into chloroplast stroma [GO:0045037]; protein targeting to chloroplast [GO:0045036]; regulation of chlorophyll biosynthetic process [GO:0010380]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Highly expressed in rosette leaves. Expressed in roots, stems and inflorescences (PubMed:11982939, PubMed:15659100, PubMed:20382967). Expressed in photosynthetic green tissues with high levels in young, developing leaf tissues (PubMed:23898032). {ECO:0000269|PubMed:11982939, ECO:0000269|PubMed:15659100, ECO:0000269|PubMed:20382967, ECO:0000269|PubMed:23898032}. locus:2157383; AT5G50920 ATP-dependent Clp protease ATP-binding subunit clpA Chaperone protein ClpC2, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 2) (Casein lytic proteinase C2),Chaperone protein ClpC1, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 1) (Casein lytic proteinase C1),Os04g0397100 protein (Fragment),Os11g0269000 protein Q2QVG9,Q7F9I1,A0A0P0W9M5,A0A0P0Y137 CLPC2_ORYSJ,CLPC1_ORYSJ,A0A0P0W9M5_ORYSJ,A0A0P0Y137_ORYSJ CLPC2 Os12g0230100 LOC_Os12g12850,CLPC1 Os04g0397100 LOC_Os04g32560 OSJNBa0039C07.4,Os04g0397100 OSNPB_040397100,Os11g0269000 OSNPB_110269000 FUNCTION: Molecular chaperone that may interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast. {ECO:0000250}. ENOG411DPP9 MIO24.13 Q8GXE5,Q9FLI5,A0A1P8BD73 Q8GXE5_ARATH,Q9FLI5_ARATH,A0A1P8BD73_ARATH Peptidase family M48 family protein (Uncharacterized protein At5g51740/MIO24_13),Peptidase family M48 family protein (Similarity to peptidase),Peptidase family M48 family protein R-ATH-169911; 49658,54639,45799 Peptidase family M48 family protein (Uncharacterized protein At5g51740/MIO24_13),Peptidase family M48 family protein (Similarity to peptidase),Peptidase family M48 family protein integral component of membrane [GO:0016021]; metalloendopeptidase activity [GO:0004222],metalloendopeptidase activity [GO:0004222] locus:2165356; AT5G51740 Peptidase family M48 Os02g0735100 protein (Putative Zn-dependent protease with chaperone function) Q6Z754 Q6Z754_ORYSJ Os02g0735100 OsJ_08294 OSNPB_020735100 P0487D09.7 ENOG411DPP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0231700 protein,Os10g0360800 protein Q6ETA1,A0A0P0XU58 Q6ETA1_ORYSJ,A0A0P0XU58_ORYSJ Os02g0231700 OJ1705_E12.7 OJ1711_D06.21 OSNPB_020231700,Os10g0360800 OSNPB_100360800 ENOG411DPP2 F27K7.10 Q9FVP7 Q9FVP7_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein F27K7.10) (WD-40 repeat family protein) 66416 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein F27K7.10) (WD-40 repeat family protein) protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888] locus:2028539; AT1G48870 WD domain G-beta repeat Os04g0417800 protein (cDNA clone:J013108P06, full insert sequence) Q0JDA3 Q0JDA3_ORYSJ Os04g0417800 Os04g0417800 OsJ_14770 OSNPB_040417800 ENOG411DPP3 BHLH137 Q93W88,A0A1P8BD24 BH137_ARATH,A0A1P8BD24_ARATH Transcription factor bHLH137 (Basic helix-loop-helix protein 137) (AtbHLH137) (bHLH 137) (Transcription factor EN 89) (bHLH transcription factor bHLH137),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 31773,29744 Transcription factor bHLH137 (Basic helix-loop-helix protein 137) (AtbHLH137) (bHLH 137) (Transcription factor EN 89) (bHLH transcription factor bHLH137),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:505006688; AT5G50915 Transcription factor Os09g0510500 protein (cDNA clone:J013053A18, full insert sequence),Os08g0536800 protein (Fragment) Q0J0G7,A0A0P0XIW1 Q0J0G7_ORYSJ,A0A0P0XIW1_ORYSJ Os09g0510500 Os09g0510500 OsJ_29973 OSNPB_090510500,Os08g0536800 OSNPB_080536800 ENOG411DPP4 MPH15.18 A0A1P8BAM9,A0A1P8B6B5,A0A1P8BG52,F4K588,F4JTX3 A0A1P8BAM9_ARATH,A0A1P8B6B5_ARATH,A0A1P8BG52_ARATH,F4K588_ARATH,F4JTX3_ARATH Transcription termination factor family protein,Mitochondrial transcription termination factor family protein 14611,68627,66903,67451,66745 Transcription termination factor family protein,Mitochondrial transcription termination factor family protein double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355],mitochondrion [GO:0005739]; plastid [GO:0009536]; double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355],chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2170209;,locus:2133920; AT5G06810,AT4G19650 mTERF Os08g0518200 protein (cDNA clone:001-124-E07, full insert sequence) (cDNA clone:J033081L13, full insert sequence) Q84Z86 Q84Z86_ORYSJ P0700D12.120 Os08g0518200 OsJ_27943 OSNPB_080518200 ENOG411DPP5 PDIL1-6,PDIL1-5 Q66GQ3,A3KPF5 PDI16_ARATH,PDI15_ARATH Protein disulfide isomerase-like 1-6 (AtPDIL1-6) (EC 5.3.4.1) (Protein disulfide isomerase 4) (AtPDI4) (Protein disulfide isomerase-like 3-2) (AtPDIL3-2),Protein disulfide isomerase-like 1-5 (AtPDIL1-5) (EC 5.3.4.1) (Protein disulfide isomerase 3) (AtPDI3) (Protein disulfide isomerase-like 3-1) (AtPDIL3-1) FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}. 5.3.4.1 59571,60158 Protein disulfide isomerase-like 1-6 (AtPDIL1-6) (EC 5.3.4.1) (Protein disulfide isomerase 4) (AtPDI4) (Protein disulfide isomerase-like 3-2) (AtPDIL3-2),Protein disulfide isomerase-like 1-5 (AtPDIL1-5) (EC 5.3.4.1) (Protein disulfide isomerase 3) (AtPDI3) (Protein disulfide isomerase-like 3-1) (AtPDIL3-1) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595}. locus:2093447;,locus:2018134; AT3G16110,AT1G52260 Protein disulfide isomerase Protein disulfide isomerase-like 1-5 (OsPDIL1-5) (EC 5.3.4.1) (Protein disulfide isomerase-like 3-1) (OsPDIL3-1) Q5WA72 PDI15_ORYSJ PDIL1-5 PDIL3-1 Os06g0163400 LOC_Os06g06790 P0681F10.44 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411DPP6 PHL7 Q9SJW0 PHL7_ARATH Myb family transcription factor PHL7 (Protein PHR1-LIKE 7) 31075 Myb family transcription factor PHL7 (Protein PHR1-LIKE 7) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2045761; AT2G01060 Myb-like DNA-binding domain Os08g0346500 protein (Putative transfactor),Os09g0299200 protein (Fragment) Q84QT0,A0A0P0XKY3 Q84QT0_ORYSJ,A0A0P0XKY3_ORYSJ P0410E11.135 Os08g0346500 OSNPB_080346500 P0404D10.4,Os09g0299200 OSNPB_090299200 ENOG411DPP7 O65268,F4JHE3 TASP1_ARATH,F4JHE3_ARATH Putative threonine aspartase (Taspase-1) (EC 3.4.25.-) [Cleaved into: Putative threonine aspartase subunit alpha; Putative threonine aspartase subunit beta],N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein ARA:AT4G00590-MONOMER; 3.4.25.- 42626,41231 Putative threonine aspartase (Taspase-1) (EC 3.4.25.-) [Cleaved into: Putative threonine aspartase subunit alpha; Putative threonine aspartase subunit beta],N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein threonine-type endopeptidase activity [GO:0004298],hydrolase activity [GO:0016787] locus:2127068; AT4G00590 isoaspartyl peptidase L-asparaginase Os04g0682500 protein B9FDD0 B9FDD0_ORYSJ Os04g0682500 OsJ_16668 OSNPB_040682500 ENOG411DPPH C0LGD7,F4KAX4,A0A1P8BAT4,A0A1P8BAT2,A0A1P8BAS1,A0A1P8BAU6 Y1684_ARATH,F4KAX4_ARATH,A0A1P8BAT4_ARATH,A0A1P8BAT2_ARATH,A0A1P8BAS1_ARATH,A0A1P8BAU6_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 105625,106226,106808,89798,80487,96430 Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2033158;,locus:2181017; AT1G06840,AT5G01950 LRR receptor-like serine threonine-protein kinase Os01g0960400 protein (Receptor protein kinase-like),Os01g0960400 protein (Putative receptor-like protein kinase 1) (cDNA clone:J013001N14, full insert sequence),Os01g0960400 protein (Fragment) Q5JN26,Q5JN27,A0A0P0VD20 Q5JN26_ORYSJ,Q5JN27_ORYSJ,A0A0P0VD20_ORYSJ P0401G10.25-2 Os01g0960400 OSNPB_010960400,P0401G10.25-1 Os01g0960400 OsJ_04842 OSNPB_010960400,Os01g0960400 OSNPB_010960400 ENOG411DPPI ECA3 Q9SY55 ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type (AtECA3) (EC 3.6.3.8) Shoot and root growth is strongly retarded when plants are grown in the absence of Mn. Also shows delayed growth when grown in the absence of Ca. Abnormal root growth in response to calcium and manganese-H. Sze-2008 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to an endomembrane compartment. Involved in calcium-enhanced root growth, in tolerance to toxic levels of manganese and in secretory processes. Has a crucial role in manganese nutrition, but is not involved in transporting copper, iron or zinc. {ECO:0000269|PubMed:18024560, ECO:0000269|PubMed:18567829}. MISCELLANEOUS: ECA3 is functionally distinct from ECA1 and is localized to a separate compartment. ARA:AT1G10130-MONOMER;MetaCyc:MONOMER-14610; R-ATH-418359;R-ATH-5578775;R-ATH-936837; 3.6.3.8; 3.6.3.8 109060 Calcium-transporting ATPase 3, endoplasmic reticulum-type (AtECA3) (EC 3.6.3.8) endomembrane system [GO:0012505]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; manganese-transporting ATPase activity [GO:0015410]; metal ion binding [GO:0046872]; calcium ion transport [GO:0006816]; manganese ion homeostasis [GO:0055071]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed in root cap, in elongation and differentiation zones of roots, in vascular tissues of roots, leaves, floral pedicels and style, in leaves, including hydathodes and guard cells, in stamens, in petals, in sepals and in siliques. {ECO:0000269|PubMed:18024560, ECO:0000269|PubMed:18567829}. locus:2201916; AT1G10130 calcium-transporting ATPase 3 endoplasmic Os03g0730800 protein A0A0P0W3I8 A0A0P0W3I8_ORYSJ Os03g0730800 OSNPB_030730800 ENOG411DPPJ OTU1 Q9ZUV4 Q9ZUV4_ARATH At2g28120/F24D13.9 (Major facilitator superfamily protein) (Nodulin-like protein) 63974 At2g28120/F24D13.9 (Major facilitator superfamily protein) (Nodulin-like protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2046238; AT2G28120 nodulin family NA NA NA NA NA NA NA ENOG411DPPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like Os12g0547600 protein (Fragment),Os12g0547600 protein A0A0P0YB44,A0A0P0YBV0 A0A0P0YB44_ORYSJ,A0A0P0YBV0_ORYSJ Os12g0547600 OSNPB_120547600 ENOG411DPPE TPR9 A0A1P8APV0,A0A1P8APP9,F4HR71 A0A1P8APV0_ARATH,A0A1P8APP9_ARATH,F4HR71_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 91016,70371,89134 Tetratricopeptide repeat (TPR)-like superfamily protein locus:2007013; AT1G33400 Inherit from KOG: Set and mynd domain containing Os10g0506800 protein (TPR Domain containing protein, expressed) (Tetratricopeptide repeat, putative) (cDNA clone:J013122F06, full insert sequence) Q337E1 Q337E1_ORYSJ Os10g0506800 LOC_Os10g36250 Os10g0506800 OSNPB_100506800 ENOG411DPPF F18P9_110 Q9M1L0,F4IE17 Q9M1L0_ARATH,F4IE17_ARATH AT3g42950/F18P9_110 (Pectin lyase-like superfamily protein) (Polygalacturonase-like protein),Pectin lyase-like superfamily protein ARA:AT3G42950-MONOMER; 54073,56347 AT3g42950/F18P9_110 (Pectin lyase-like superfamily protein) (Polygalacturonase-like protein),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2078531;,locus:2202170; AT3G42950,AT1G19170 Glycosyl hydrolases family 28 Os02g0781000 protein (Fragment),Os09g0439400 protein (Putative polygalacturonase) (cDNA clone:J023132L13, full insert sequence) Q0DX16,Q69P92 Q0DX16_ORYSJ,Q69P92_ORYSJ Os02g0781000 Os02g0781000 OSNPB_020781000,Os09g0439400 Os09g0439400 OJ1344_B01.15 OSNPB_090439400 P0556H01.31 ENOG411DPPG SCL13 Q9M0M5,A0A1P8B5A9 SCL13_ARATH,A0A1P8B5A9_ARATH Scarecrow-like protein 13 (AtSCL13) (GRAS family protein 24) (AtGRAS-24),SCARECROW-like 13 FUNCTION: Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. 58470,58455 Scarecrow-like protein 13 (AtSCL13) (GRAS family protein 24) (AtGRAS-24),SCARECROW-like 13 cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. AT4G17230 Scarecrow-like protein NA NA NA NA NA NA NA ENOG411DPPP TIP3-1,TIP3-2 P26587,O22588 TIP31_ARATH,TIP32_ARATH Aquaporin TIP3-1 (Alpha-tonoplast intrinsic protein) (Alpha-TIP) (Tonoplast intrinsic protein 3-1) (AtTIP3;1) [Cleaved into: Aquaporin TIP3-1, N-terminally processed],Probable aquaporin TIP3-2 (Beta-tonoplast intrinsic protein) (Beta-TIP) (Tonoplast intrinsic protein 3-2) (AtTIP3;2) [Cleaved into: Probable aquaporin TIP3-2, N-terminally processed] FUNCTION: Water channel required to facilitate the transport of water from the vacuolar compartment to the cytoplasm. {ECO:0000269|PubMed:16668923}.,FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. R-ATH-432047; 28308,28183 Aquaporin TIP3-1 (Alpha-tonoplast intrinsic protein) (Alpha-TIP) (Tonoplast intrinsic protein 3-1) (AtTIP3;1) [Cleaved into: Aquaporin TIP3-1, N-terminally processed],Probable aquaporin TIP3-2 (Beta-tonoplast intrinsic protein) (Beta-TIP) (Tonoplast intrinsic protein 3-2) (AtTIP3;2) [Cleaved into: Probable aquaporin TIP3-2, N-terminally processed] central vacuole [GO:0042807]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; protein storage vacuole [GO:0000326]; water channel activity [GO:0015250]; autophagy [GO:0006914]; ion transmembrane transport [GO:0034220],central vacuole [GO:0042807]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220] TISSUE SPECIFICITY: Predominantly expressed in developing embryos (seeds). Also expressed in green siliques. {ECO:0000269|PubMed:16668923, ECO:0000269|PubMed:8624437}.,TISSUE SPECIFICITY: Predominantly expressed in developing seeds. Also expressed in rosette leaves. {ECO:0000269|PubMed:11806824}. locus:2197279;,locus:2030968; AT1G73190,AT1G17810 Aquaporin Probable aquaporin TIP3-1 (Tonoplast intrinsic protein 3-1) (OsTIP3;1) Q9FWV6 TIP31_ORYSJ TIP3-1 TIP3 Os10g0492600 LOC_Os10g35050 OsJ_030736 OSJNBa0051D19.19 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DPPQ T17J13.200 Q9M1Q0,A0A1P8B0R1,A0A1P8B0M9,A0A1P8B0P0,F4IK68,F4IK69 Q9M1Q0_ARATH,A0A1P8B0R1_ARATH,A0A1P8B0M9_ARATH,A0A1P8B0P0_ARATH,F4IK68_ARATH,F4IK69_ARATH At3g62240 (Putative zinc-finger protein) (RING/U-box superfamily protein),Zinc ion binding/nucleic acid binding protein 90224,80092,84517,82322,82464,85365 At3g62240 (Putative zinc-finger protein) (RING/U-box superfamily protein),Zinc ion binding/nucleic acid binding protein mRNA binding [GO:0003729],nucleic acid binding [GO:0003676] locus:2097988;,locus:2041464; AT3G62240,AT2G47090 zinc finger Os01g0251200 protein (cDNA clone:001-113-E12, full insert sequence),EBR1 (Os05g0279400 protein) (cDNA clone:J033101B01, full insert sequence),Os01g0251200 protein (Fragment) Q5NBD4,Q0DJH5,A0A0P0V134 Q5NBD4_ORYSJ,Q0DJH5_ORYSJ,A0A0P0V134_ORYSJ P0434D08.22-1 Os01g0251200 OSNPB_010251200,Os05g0279400 EBR1 Os05g0279400 OSNPB_050279400,Os01g0251200 OSNPB_010251200 ENOG411DPPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os01g0799100 protein (cDNA, clone: J065198I08, full insert sequence) Q0JII7 Q0JII7_ORYSJ Os01g0799100 Os01g0799100 OSNPB_010799100 ENOG411DPPT LPLAT1,LPLAT2 F4IDU4,Q9CAN8 MBOA1_ARATH,MBOA2_ARATH Lysophospholipid acyltransferase 1 (AtLPLAT1) (EC 2.3.1.-) (1-acylglycerophosphocholine O-acyltransferase 1) (EC 2.3.1.23) (1-acylglycerophosphoethanolamine O-acyltransferase) (EC 2.3.1.n7) (1-acylglycerophosphoserine O-acyltransferase) (EC 2.3.1.n6) (Lysophosphatidylcholine acyltransferase 1) (LPCAT1) (Lysophosphatidylethanolamine acyltransferase) (LPEAT) (Lysophosphatidylglycerol acyltransferase) (LPGAT) (Lysophosphatidylserine acyltransferase) (LPSAT),Lysophospholipid acyltransferase 2 (AtLPLAT2) (EC 2.3.1.-) (1-acylglycerophosphocholine O-acyltransferase 2) (EC 2.3.1.23) (1-acylglycerophosphoethanolamine O-acyltransferase) (EC 2.3.1.n7) (1-acylglycerophosphoserine O-acyltransferase) (EC 2.3.1.n6) (Lysophosphatidylcholine acyltransferase 2) (LPCAT2) (Lysophosphatidylethanolamine acyltransferase) (LPEAT) (Lysophosphatidylglycerol acyltransferase) (LPGAT) (Lysophosphatidylserine acyltransferase) (LPSAT) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants lpcat1 and lpcat2-2 show increased contents of very-long-chain fatty acids and decreased polyunsaturated fatty acids in seed triacylglycerols. {ECO:0000269|PubMed:22233193, ECO:0000269|PubMed:22932756, ECO:0000269|PubMed:23150634}. FUNCTION: Lysophospholipid acyltransferase with broad specificity. Mediates the conversion of lysophosphatidylethanolamine (1-acyl-sn-glycero-3-phosphoethanolamine or LPE) into phosphatidylethanolamine (1,2-diacyl-sn-glycero-3-phosphoethanolamine or PE) (LPEAT activity). Catalyzes the acylation of lysophosphatidylserine (1-acyl-2-hydroxy-sn-glycero-3-phospho-L-serine or LPS) into phosphatidylserine (1,2-diacyl-sn-glycero-3-phospho-L-serine or PS) (LPSAT activity). Can convert lysophosphatidylcholine (1-acyl-sn-glycero-3-phosphocholine or LPC) into phosphatidylcholine (1,2-diacyl-sn-glycero-3-phosphocholine or PC) (LPCAT activity) Can also utilizes lysophosphatidylglycerol (LPG) as substrate in vitro. Has neither activity towards lysophosphatidic acid (LPA) nor lysophosphatidylinositol (LPI). Lysophospholipid acyltransferases (LPLATs) catalyze the reacylation step of the phospholipid remodeling pathway also known as the Lands cycle. The primary function of the Lands cycle is to provide a route for acyl remodeling to modify fatty acid (FA) composition of phospholipids derived from the Kennedy pathway. Is involved in PC acyl editing and phosphocholine headgroup exchange between PC and diacylglycerols. This processes control the majority of acyl fluxes through PC to provide polyunsaturated fatty acids for triacylglycerols synthesis in seeds. {ECO:0000269|PubMed:18154737, ECO:0000269|PubMed:22932756, ECO:0000269|PubMed:23150634}. MetaCyc:MONOMER-19024; R-ATH-1482788;R-ATH-1482801;R-ATH-1482839;R-ATH-1482922; Metabolic pathways (01100),Glycerophospholipid metabolism (00564),Ether lipid metabolism (00565),Glycerolipid metabolism (00561) 2.3.1.-; 2.3.1.23; 2.3.1.n7; 2.3.1.n6 52152,52769 Lysophospholipid acyltransferase 1 (AtLPLAT1) (EC 2.3.1.-) (1-acylglycerophosphocholine O-acyltransferase 1) (EC 2.3.1.23) (1-acylglycerophosphoethanolamine O-acyltransferase) (EC 2.3.1.n7) (1-acylglycerophosphoserine O-acyltransferase) (EC 2.3.1.n6) (Lysophosphatidylcholine acyltransferase 1) (LPCAT1) (Lysophosphatidylethanolamine acyltransferase) (LPEAT) (Lysophosphatidylglycerol acyltransferase) (LPGAT) (Lysophosphatidylserine acyltransferase) (LPSAT),Lysophospholipid acyltransferase 2 (AtLPLAT2) (EC 2.3.1.-) (1-acylglycerophosphocholine O-acyltransferase 2) (EC 2.3.1.23) (1-acylglycerophosphoethanolamine O-acyltransferase) (EC 2.3.1.n7) (1-acylglycerophosphoserine O-acyltransferase) (EC 2.3.1.n6) (Lysophosphatidylcholine acyltransferase 2) (LPCAT2) (Lysophosphatidylethanolamine acyltransferase) (LPEAT) (Lysophosphatidylglycerol acyltransferase) (LPGAT) (Lysophosphatidylserine acyltransferase) (LPSAT) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; 1-acylglycerophosphocholine O-acyltransferase activity [GO:0047184]; lysophospholipid acyltransferase activity [GO:0071617]; transferase activity, transferring acyl groups [GO:0016746]; galactolipid biosynthetic process [GO:0019375]; glycerolipid biosynthetic process [GO:0045017]; phospholipid biosynthetic process [GO:0008654],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; 1-acylglycerophosphocholine O-acyltransferase activity [GO:0047184]; lysophospholipid acyltransferase activity [GO:0071617]; transferase activity, transferring acyl groups [GO:0016746]; galactolipid biosynthetic process [GO:0019375]; glycerolipid biosynthetic process [GO:0045017]; phospholipid biosynthetic process [GO:0008654]; triglyceride biosynthetic process [GO:0019432]; triglyceride metabolic process [GO:0006641] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, petals, stigma, chalazal endosperm of developing seeds and vascular bundles of siliques. {ECO:0000269|PubMed:23150634}.,TISSUE SPECIFICITY: Expressed in rosette leaves, pollen grains, developing embryos and developing seeds. {ECO:0000269|PubMed:23150634}. locus:2195072;,locus:2015188; AT1G12640,AT1G63050 Membrane bound O-acyl Membrane bound O-acyl transferase-like (Os02g0676000 protein),Os02g0676000 protein (Fragment) Q6EP89,A0A0P0VMY8 Q6EP89_ORYSJ,A0A0P0VMY8_ORYSJ Os02g0676000 Os02g0676000 OsJ_07912 OSNPB_020676000 P0135D07.18,Os02g0676000 OSNPB_020676000 ENOG411DPPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0800400 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:001-115-F08, full insert sequence) Q8S2H6 Q8S2H6_ORYSJ Os01g0800400 Os01g0800400 OsJ_03770 OSNPB_010800400 P0003D09.7 P0691E06.39 ENOG411DPPV AMP1,LAMP1 Q9M1S8,Q7Y228,Q9XH28,F4JGJ7 GCP2_ARATH,LAMP1_ARATH,Q9XH28_ARATH,F4JGJ7_ARATH Probable glutamate carboxypeptidase AMP1 (EC 3.4.17.21) (Probable glutamate carboxypeptidase 2) (Probable glutamate carboxypeptidase II) (Protein ALTERED MERISTEM PROGRAM 1) (AtAMP1) (Protein CONSTITUTIVE MORPHOGENESIS 2) (Protein HAUPTLING) (Protein MULTIFOLIA) (Protein PRIMORDIA TIMING),Probable glutamate carboxypeptidase LAMP1 (EC 3.4.17.21) (Protein LIKE AMP1),F10A2.10 protein (Protease-associated (PA) domain-containing protein) (Putative peptidase),Protease-associated (PA) domain-containing protein seedlings have enlarged shoot apical meristem; embryos have extra cell tiers due to abnormal cell divisions of the basal cell derivatives. Embryo and seedling defective-A. Chaudhury-2001 FUNCTION: May modulate the level of one or more small signaling molecules that have a role in regulating meristem function. May play a role in balancing and restricting the meristem-promoting activity of auxin signaling (PubMed:17553903). Involved in ethylene and giberellin (GA) signaling pathways or in a parallel pathway controlling cell and hypocotyl elongation and cellular organization (PubMed:17006669). Involved in abscisic acid (ABA) signaling pathway. Plays a negative role in ABA-mediated seed germination and seedling development (PubMed:23603279). Acts in association with LAMP1 to suppress ectopic stem cell niche formation in the shoot apical meristem (SAM) indenpendently of cytokinin signaling pathway (PubMed:25673776). Modulates responses to ABA, oxidative stress and abotic stress (PubMed:23621575). Acts as negative regulator of the ABA signaling pathway to modulate freezing and drought stress responses. Mediates carbon and amino acid metabolism (PubMed:23621575, PubMed:23603279). May be involved in the acquisition and/or maintenance of seed dormancy (PubMed:21637772). Involved in the regulation of response to heat shock and plant defense (PubMed:27743891). {ECO:0000269|PubMed:17006669, ECO:0000269|PubMed:17553903, ECO:0000269|PubMed:21637772, ECO:0000269|PubMed:23603279, ECO:0000269|PubMed:23621575, ECO:0000269|PubMed:25673776, ECO:0000269|PubMed:27743891}.,FUNCTION: Acts in association with AMP1 to suppress ectopic stem cell niche formation in the shoot apical meristem (SAM) indenpendently of cytokinin signaling pathway. {ECO:0000269|PubMed:25673776}. ARA:AT3G54720-MONOMER;,ARA:AT5G19740-MONOMER; R-ATH-70614; 3.4.17.21 77153,74739,31115,27072 Probable glutamate carboxypeptidase AMP1 (EC 3.4.17.21) (Probable glutamate carboxypeptidase 2) (Probable glutamate carboxypeptidase II) (Protein ALTERED MERISTEM PROGRAM 1) (AtAMP1) (Protein CONSTITUTIVE MORPHOGENESIS 2) (Protein HAUPTLING) (Protein MULTIFOLIA) (Protein PRIMORDIA TIMING),Probable glutamate carboxypeptidase LAMP1 (EC 3.4.17.21) (Protein LIKE AMP1),F10A2.10 protein (Protease-associated (PA) domain-containing protein) (Putative peptidase),Protease-associated (PA) domain-containing protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; carboxypeptidase activity [GO:0004180]; metal ion binding [GO:0046872]; metallocarboxypeptidase activity [GO:0004181]; embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; leaf vascular tissue pattern formation [GO:0010305]; meristem development [GO:0048507]; photomorphogenesis [GO:0009640]; proteolysis [GO:0006508]; regulation of floral meristem growth [GO:0010080]; regulation of inflorescence meristem growth [GO:0010081]; regulation of root meristem growth [GO:0010082]; root development [GO:0048364],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; meristem maintenance [GO:0010073]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008],mitochondrion [GO:0005739]; peptidase activity [GO:0008233],peptidase activity [GO:0008233] TISSUE SPECIFICITY: Expressed in all plant parts. Highest levels in the bolt stem, inflorescence, root and silique. Low level in leaves. {ECO:0000269|PubMed:11549767}. locus:2102470;,locus:2183229;,locus:2116059; AT3G54720,AT5G19740,AT4G07670 glutamate carboxypeptidase Probable glutamate carboxypeptidase PLA3 (EC 3.4.17.21) (Protein GOLIATH) (Protein PLASTOCHRON3),Os01g0740600 protein (Fragment),Os01g0743300 protein (Putative glutamate carboxypeptidase),Os01g0740500 protein,Os03g0790600 protein (Fragment),Os01g0740650 protein Q852M4,Q0JJG1,Q5JKV3,A0A0P0V830,A0A0P0W3Z5,A0A0P0V7Z3,A0A0P0W4M0 PLAT3_ORYSJ,Q0JJG1_ORYSJ,Q5JKV3_ORYSJ,A0A0P0V830_ORYSJ,A0A0P0W3Z5_ORYSJ,A0A0P0V7Z3_ORYSJ,A0A0P0W4M0_ORYSJ PLA3 GO Os03g0790600 LOC_Os03g57660 OSJNBa0087O09.17,Os01g0740600 Os01g0740600 OSNPB_010740600,Os01g0743300 OSNPB_010743300 P0439E07.31,Os01g0740500 OSNPB_010740500,Os03g0790600 OSNPB_030790600,Os01g0740650 OSNPB_010740650 FUNCTION: Involved in the regular timing (plastochron) of lateral organs formation. May regulate the rate of leaf initiation and the duration of vegetative phase. Seems to be redundant to the function of PLASTOCHRON1 and PLASTOCHRON2, but to act in an independent pathway. May be required for the synthesis of small signaling molecules that have a role in regulating meristem function. Involved in plant hormone homeostasis. {ECO:0000269|PubMed:19228340}. ENOG411DPPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Os07g0104100 protein (Fragment),Peroxidase (EC 1.11.1.7),Os07g0104233 protein (Fragment) Q0D968,Q5U1F9,A0A0P0X1D6 Q0D968_ORYSJ,Q5U1F9_ORYSJ,A0A0P0X1D6_ORYSJ Os07g0104100 Os07g0104100 OSNPB_070104100,prx134 LOC_Os11g43980 Os11g0661600 OSNPB_110661600,Os07g0104233 OSNPB_070104233 ENOG411DZ1Q NET3C,NET3A,NET3B O82259,Q66GR8,Q4PSJ7 NET3C_ARATH,NET3A_ARATH,NET3B_ARATH Protein NETWORKED 3C,Protein NETWORKED 3A,Protein NETWORKED 3B FUNCTION: Plant-specific actin binding protein. Part of a membrane-cytoskeletal adapter complex that forms a bridge between the endoplasmic reticulum and the plasma membrane. {ECO:0000269|PubMed:24909329}.,FUNCTION: Plant-specific actin binding protein. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000305|PubMed:22840520}. 26489,31481,25364 Protein NETWORKED 3C,Protein NETWORKED 3A,Protein NETWORKED 3B endoplasmic reticulum membrane [GO:0005789]; plasma membrane [GO:0005886]; actin binding [GO:0003779],cytoskeleton [GO:0005856]; nuclear membrane [GO:0031965]; vacuolar membrane [GO:0005774]; actin binding [GO:0003779],actin binding [GO:0003779] locus:2043363;,locus:2020843;,locus:505006429; AT2G47920,AT1G03470,AT4G03153 kinase interacting family protein Os07g0666600 protein (cDNA clone:J013156C01, full insert sequence) Q8H487 Q8H487_ORYSJ P0450A04.120 Os07g0666600 OsJ_25490 OSNPB_070666600 ENOG411DZ1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411DZ1X Q94HW6,A0A1P8AST1,A0A1P8AML5,A0A1P8AMW4,F4I7J9,F4I7K0 Q94HW6_ARATH,A0A1P8AST1_ARATH,A0A1P8AML5_ARATH,A0A1P8AMW4_ARATH,F4I7J9_ARATH,F4I7K0_ARATH B-block-binding subunit of TFIIIC protein (Uncharacterized protein T4M14.2),B-block-binding subunit of TFIIIC protein,B-block binding subunit of TFIIIC 74007,75431,202220,23279,207064,196310 B-block-binding subunit of TFIIIC protein (Uncharacterized protein T4M14.2),B-block-binding subunit of TFIIIC protein,B-block binding subunit of TFIIIC transcription factor TFIIIC complex [GO:0000127]; RNA polymerase III type 1 promoter sequence-specific DNA binding [GO:0001002]; RNA polymerase III type 2 promoter sequence-specific DNA binding [GO:0001003]; transcription factor activity, RNA polymerase III transcription factor binding [GO:0001007]; 5S class rRNA transcription from RNA polymerase III type 1 promoter [GO:0042791]; transcription initiation from RNA polymerase III promoter [GO:0006384]; tRNA transcription [GO:0009304] locus:2826983;locus:2827010;locus:504956179;,locus:2018799; AT1G58766AT1G59077;AT1G59453;,AT1G17450 NA Os02g0633100 protein (Transcription factor-like) Q6H7J8 Q6H7J8_ORYSJ OJ1643_A10.15-1 Os02g0633100 OSNPB_020633100 ENOG411E8YA MGO3.1 Q9LVH1,Q1G3X0,A0A1P8BGK0,A0A1P8BGJ5 Q9LVH1_ARATH,Q1G3X0_ARATH,A0A1P8BGK0_ARATH,A0A1P8BGJ5_ARATH Uncharacterized protein,Nucleolar-like protein 34155,10636,29702,26856 Uncharacterized protein,Nucleolar-like protein locus:2168143;,locus:4515102757; AT5G60030,AT1G75335 NA NA NA NA NA NA NA NA ENOG411E8YC ZPR1 F4IG60 ZPR1_ARATH Protein LITTLE ZIPPER 1 FUNCTION: Competitive inhibitor of the HD-ZIPIII transcription factors in shoot apical meristem (SAM) development. Acts by forming non-functional heterodimers. Part of a negative feedback loop. Essential for proper functioning of stem cells in the SAM. {ECO:0000250|UniProtKB:Q9LXI8}. 16255 Protein LITTLE ZIPPER 1 adaxial/abaxial axis specification [GO:0009943]; leaf shaping [GO:0010358]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the adaxial epidermis of the cotyledons and in the vascular cylinder of wild-type torpedo stage embryos. {ECO:0000269|PubMed:18055602}. locus:2050926; AT2G45450 NA NA NA NA NA NA NA NA ENOG411E8YF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411E8YG O04248 O04248_ARATH At4g02040 (Uncharacterized protein AT4g02040) (Uncharacterized protein T10M13.5) 16774 At4g02040 (Uncharacterized protein AT4g02040) (Uncharacterized protein T10M13.5) locus:2132203; AT4G02040 NA NA NA NA NA NA NA NA ENOG411E8YH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cell proliferation Phytosulfokines 2 [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] Q0IUL4 PSK2_ORYSJ PSK2 Os11g0149400 LOC_Os11g05190 OsJ_031658 FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. ENOG411E8YI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FIST N domain NA NA NA NA NA NA NA ENOG411E8YK Q67Y03 Q67Y03_ARATH At4g19430 (Uncharacterized protein At4g19430) 18444 At4g19430 (Uncharacterized protein At4g19430) locus:2140356; AT4G19430 NA NA NA NA NA NA NA NA ENOG411E8YM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0029H02.18 protein (Os04g0500501 protein),Os08g0540700 protein Q7XU83,Q6ZIU4 Q7XU83_ORYSJ,Q6ZIU4_ORYSJ OSJNBa0029H02.18 Os04g0500501 OSNPB_040500501,Os08g0540700 OJ1211_G06.9 OsJ_28125 OSNPB_080540700 ENOG411E8YP Q9XII3 Q9XII3_ARATH Ac-like transposase (HAT dimerization domain-containing protein / transposase-like protein) 44120 Ac-like transposase (HAT dimerization domain-containing protein / transposase-like protein) cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981] locus:2052951; AT2G16040 NA NA NA NA NA NA NA NA ENOG411E8YQ B9DGT3,B9DG55,F4ICE8 B9DGT3_ARATH,B9DG55_ARATH,F4ICE8_ARATH AT1G25275 protein (Thionin-like protein),Thionin-like protein 7799,9033,7831 AT1G25275 protein (Thionin-like protein),Thionin-like protein response to karrikin [GO:0080167] locus:505006145; AT1G25275 NA NA NA NA NA NA NA NA ENOG411E8YR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0341500 protein (cDNA clone:002-115-D06, full insert sequence) Q0DCE3 Q0DCE3_ORYSJ Os06g0341500 Os06g0341500 OSNPB_060341500 ENOG411E8YS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8YU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8YV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0451700 protein (cDNA clone:J023002B05, full insert sequence) Q0JCS6 Q0JCS6_ORYSJ Os04g0451700 Os04g0451700 OsJ_15000 OsJ_15001 OSNPB_040451700 ENOG411E8YW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8YX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0560500 protein (cDNA clone:001-112-F01, full insert sequence) Q688Y6 Q688Y6_ORYSJ Os05g0560500 OJ1115_B06.7 OsJ_19529 OSNPB_050560500 ENOG411E8YY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0530033 protein B9FH31 B9FH31_ORYSJ Os05g0530033 OsJ_19302 OSNPB_050530033 ENOG411E8YZ Q2V301 Q2V301_ARATH Transmembrane protein 12276 Transmembrane protein integral component of membrane [GO:0016021] locus:1009023436; AT5G50175 NA NA NA NA NA NA NA NA ENOG411E8Y2 MSF19.6 Q5BPG1,Q2V3E8,F4KAN8 Q5BPG1_ARATH,Q2V3E8_ARATH,F4KAN8_ARATH Transmembrane protein,Oxysterol-binding 4B-like protein 26695,13972,25720 Transmembrane protein,Oxysterol-binding 4B-like protein integral component of membrane [GO:0016021] locus:1009023367;,locus:2172984; AT4G25845,AT5G57400 NA NA NA NA NA NA NA NA ENOG411E8Y3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411E8Y7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytosulfokines NA NA NA NA NA NA NA ENOG411E8Y8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE domain Os03g0121450 protein A0A0N7KGH5 A0A0N7KGH5_ORYSJ Os03g0121450 OSNPB_030121450 ENOG411DZ16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED Os12g0204000 protein A0A0P0Y813 A0A0P0Y813_ORYSJ Os12g0204000 OSNPB_120204000 ENOG411DZ18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitogen-activated protein kinase kinase kinase NA NA NA NA NA NA NA ENOG411E3E7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EF hand family protein Os07g0631700 protein (cDNA clone:001-104-H09, full insert sequence) Q8LHN5 Q8LHN5_ORYSJ P0519E12.112 Os07g0631700 OsJ_25242 OSNPB_070631700 ENOG411E3E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os06g0342875 protein,Os11g0265800 protein,Os11g0265850 protein A0A0P0WWA0,A0A0P0Y138,A0A0P0Y129 A0A0P0WWA0_ORYSJ,A0A0P0Y138_ORYSJ,A0A0P0Y129_ORYSJ Os06g0342875 OSNPB_060342875,Os11g0265800 OSNPB_110265800,Os11g0265850 OSNPB_110265850 ENOG411E3E5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA agamous-like MADS-box protein NA NA NA NA NA NA NA ENOG411E3E4 Q8RXT7 Q8RXT7_ARATH Myosin-G heavy chain-like protein (Uncharacterized protein At2g42975) 20264 Myosin-G heavy chain-like protein (Uncharacterized protein At2g42975) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:504956003; AT2G42975 NA Os01g0666600 protein Q5QLQ7 Q5QLQ7_ORYSJ Os01g0666600 Os01g0666600 OsJ_02936 OSJNBb0063G05.7 OSNPB_010666600 ENOG411E3E3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E3E2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0708500 protein (cDNA clone:002-114-G07, full insert sequence) Q0DY90 Q0DY90_ORYSJ Os02g0708500 Os02g0708500 OSNPB_020708500 ENOG411E3E1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0167400 protein,Os03g0204600 protein (Fragment),Os01g0184700 protein (Fragment) A0A0P0XZJ9,A0A0P0VUP2,A0A0P0UZF4 A0A0P0XZJ9_ORYSJ,A0A0P0VUP2_ORYSJ,A0A0P0UZF4_ORYSJ Os11g0167400 OSNPB_110167400,Os03g0204600 OSNPB_030204600,Os01g0184700 OSNPB_010184700 ENOG411E3E0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os03g0167000 protein (Protease inhibitor/seed storage/LTP family protein, expressed) Q10R96 Q10R96_ORYSJ Os03g0167000 LOC_Os03g07100 OSNPB_030167000 ENOG411E3E9 TIC20-IV Q9ZQZ9 TI204_ARATH Protein TIC 20-IV, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-IV) (AtTIC20-IV) DISRUPTION PHENOTYPE: No visible phenotype. Tic20-I and tic20-IV double mutant is embryo lethal. {ECO:0000269|PubMed:21266460, ECO:0000269|PubMed:21395885}. FUNCTION: Involved in protein precursor import into chloroplasts. Partially redundant with TIC20-I, but not with TIC20-II or TIC20-V. {ECO:0000269|PubMed:21266460}. 32520 Protein TIC 20-IV, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-IV) (AtTIC20-IV) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; protein import into chloroplast stroma [GO:0045037] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21395885}. TISSUE SPECIFICITY: Expressed in roots,seeds and non-photosynthetic tissues. Low levels in leaves. {ECO:0000269|PubMed:15033972, ECO:0000269|PubMed:21266460, ECO:0000269|PubMed:21395885}. locus:2125472; AT4G03320 Translocon at the inner envelope membrane of chloroplasts 20-IV NA NA NA NA NA NA NA ENOG411E3E8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein DEHYDRATION-INDUCED 19 homolog Protein DEHYDRATION-INDUCED 19 homolog 5 (OsDi19-5) Q5JME8 DI195_ORYSJ DI19-5 Os01g0971100 LOC_Os01g73960 OsJ_004810 P0518C01.8 ENOG411E3EG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0443800 protein (Fragment),Os09g0443700 protein (Fragment) A0A0P0XMF4,A0A0P0XMU5 A0A0P0XMF4_ORYSJ,A0A0P0XMU5_ORYSJ Os09g0443800 OSNPB_090443800,Os09g0443700 OSNPB_090443700 ENOG411E3EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3EE Q9ZVK5 Q9ZVK5_ARATH At2g14660 (Expressed protein) (Thymocyte nuclear-like protein) 17758 At2g14660 (Expressed protein) (Thymocyte nuclear-like protein) nucleus [GO:0005634] locus:2064260; AT2G14660 thymocyte nuclear protein Os03g0676100 protein,Os08g0485300 protein (Fragment) A0A0P0W1D7,A0A0P0XH54 A0A0P0W1D7_ORYSJ,A0A0P0XH54_ORYSJ Os03g0676100 OSNPB_030676100,Os08g0485300 OSNPB_080485300 ENOG411E3ED AFP3,AFP2 Q94F39,Q9LMX5 AFP3_ARATH,AFP2_ARATH Ninja-family protein AFP3 (ABI five-binding protein 3) (ABI5-binding protein 3),Ninja-family protein AFP2 (ABI five-binding protein 2) (ABI5-binding protein 2) DISRUPTION PHENOTYPE: Exhibits hypersensitivity to salt and slight hypersensitivity to glucose abscisic acid (ABA). {ECO:0000269|PubMed:18484180}.,DISRUPTION PHENOTYPE: Exhibits hypersensitivity to salt, glucose and osmotic stress and slight hypersensitivity to abscisic acid (ABA). {ECO:0000269|PubMed:18484180}. Hypersensitive to salt glucose and osmotic stress. Hyperdormant. Slightly sensitive to ABA. FUNCTION: Acts as a negative regulator of abscisic acid (ABA) response and stress responses. {ECO:0000250}.,FUNCTION: Acts as a negative regulator of abscisic acid (ABA) response during germination through the ubiquitin-mediated proteolysis of ABI5/DPBF1. {ECO:0000269|PubMed:18484180}. 25243,38211 Ninja-family protein AFP3 (ABI five-binding protein 3) (ABI5-binding protein 3),Ninja-family protein AFP2 (ABI five-binding protein 2) (ABI5-binding protein 2) nucleus [GO:0005634]; signal transduction [GO:0007165],nucleus [GO:0005634]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; signal transduction [GO:0007165] locus:2094167;,locus:2023860; AT3G29575,AT1G13740 ninja-family protein Ninja-family protein Os03g0419100,Ninja-family protein Os07g0602900,Os07g0602900 protein (Fragment) Q10JI3,Q6YVY6,A0A0P0X8E0 NNJA3_ORYSJ,NNJA2_ORYSJ,A0A0P0X8E0_ORYSJ Os03g0419100 LOC_Os03g30570 OSJNBb0028K20.14,Os07g0602900 LOC_Os07g41160 OSJNBb0018H10.21 OSJNBb0039M16.11,Os07g0602900 OSNPB_070602900 ENOG411E3EC WOX4 Q6X7J9,A0A1P8AM87 WOX4_ARATH,A0A1P8AM87_ARATH WUSCHEL-related homeobox 4,WUSCHEL related homeobox 4 Xylem development sensitive to TDIF (protein signaling molecule)-H. Fukuda-2010 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. 28675,21292 WUSCHEL-related homeobox 4,WUSCHEL related homeobox 4 nucleus [GO:0005634]; DNA binding [GO:0003677]; cell division [GO:0051301]; procambium histogenesis [GO:0010067]; regulation of transcription, DNA-templated [GO:0006355]; signal transduction [GO:0007165]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2825767; AT1G46480 homeobox WUSCHEL-related homeobox 4 (OsWOX4) Q7XTV3 WOX4_ORYSJ WOX4 HB3 Os04g0649400 LOC_Os04g55590 OsJ_015698 OSJNBa0010D21.16 OSJNBb0059K02.2 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411E3EB Q8L948,F4JVV4 Q8L948_ARATH,F4JVV4_ARATH Uncharacterized protein At4g32930,Uncharacterized protein 18466,19265 Uncharacterized protein At4g32930,Uncharacterized protein locus:2123772; AT4G32930 Eukaryotic protein of unknown function (DUF866) Os06g0688900 protein,Os01g0565600 protein (cDNA clone:006-210-E05, full insert sequence),Os01g0565600 protein (Fragment) Q653E5,Q656U1,A0A0P0V461 Q653E5_ORYSJ,Q656U1_ORYSJ,A0A0P0V461_ORYSJ Os06g0688900 OsJ_22434 OSNPB_060688900 P0623A10.48 P0661G04.21,P0697C12.21-1 Os01g0565600 OsJ_02254 OSJNBb0049O23.25-1 OSNPB_010565600,Os01g0565600 OSNPB_010565600 ENOG411E3EA ATL73,ATL72 Q9FLC6,Q9SG96 ATL73_ARATH,ATL72_ARATH RING-H2 finger protein ATL73 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL73),RING-H2 finger protein ATL72 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL72) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 19120,19600 RING-H2 finger protein ATL73 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL73),RING-H2 finger protein ATL72 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL72) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; anther dehiscence [GO:0009901]; pollen development [GO:0009555]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; regulation of jasmonic acid biosynthetic process [GO:0080141]; stamen development [GO:0048443],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2153554;,locus:2103162; AT5G05280,AT3G10910 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E3EN B3H6J5 B3H6J5_ARATH Pre-mRNA-splicing factor R-ATH-72163; 68353 Pre-mRNA-splicing factor locus:4515103226; AT3G49601 cwf21 domain Os04g0609100 protein (Fragment) A0A0P0WEK8 A0A0P0WEK8_ORYSJ Os04g0609100 OSNPB_040609100 ENOG411E3EM TCP19 Q9LT89 TCP19_ARATH Transcription factor TCP19 31460 Transcription factor TCP19 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of defense response [GO:0031347]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2166518; AT5G51910 Transcription factor NA NA NA NA NA NA NA ENOG411E3EK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sequence-specific DNA binding Homeobox-leucine zipper protein HOX18 (HD-ZIP protein HOX18) (Homeodomain transcription factor HOX18) (OsHox18) Q5Z6F6 HOX18_ORYSJ HOX18 Os06g0698200 LOC_Os06g48290 OsJ_021636 P0028E05.36 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E3EJ HAT7 Q00466 HAT7_ARATH Homeobox-leucine zipper protein HAT7 (HD-ZIP protein ATHB-3) (Homeodomain transcription factor ATHB-3) (Homeodomain-leucine zipper protein HAT7) (HD-ZIP protein 7) FUNCTION: Probable transcription factor. {ECO:0000250}. 36282 Homeobox-leucine zipper protein HAT7 (HD-ZIP protein ATHB-3) (Homeodomain transcription factor ATHB-3) (Homeodomain-leucine zipper protein HAT7) (HD-ZIP protein 7) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. locus:2150901; AT5G15150 homeobox-leucine zipper protein NA NA NA NA NA NA NA ENOG411E3EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os04g0580400 protein (Fragment) Q0JAS6 Q0JAS6_ORYSJ Os04g0580400 Os04g0580400 OSNPB_040580400 ENOG411E3EH FKBP18 Q9LM71,A0A1P8APZ5 FKB18_ARATH,A0A1P8APZ5_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic (PPIase FKBP18) (EC 5.2.1.8) (FK506-binding protein 18) (AtFKBP18) (Immunophilin FKBP18) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 25530,25477 Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic (PPIase FKBP18) (EC 5.2.1.8) (FK506-binding protein 18) (AtFKBP18) (Immunophilin FKBP18) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; cytoplasm [GO:0005737]; thylakoid lumen [GO:0031977]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077],peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2030502; AT1G20810 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) B9F239,Q6ZGL6 B9F239_ORYSJ,Q6ZGL6_ORYSJ Os02g0117600 OsJ_05130 OSNPB_020117600,Os02g0117600 OJ1442_E05.30 OSNPB_020117600 ENOG411E3EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Barwin family Os11g0592200 protein (Pathogenesis-related protein) (Win1, putative, expressed) (cDNA clone:J023075A19, full insert sequence) Q941F5 Q941F5_ORYSJ PR4 LOC_Os11g37970 Os11g0592200 OsJ_34485 OSNPB_110592200 ENOG411E3EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein, expressed (Os12g0128000 protein) (cDNA clone:J033149H01, full insert sequence),Os02g0543200 protein,Os11g0131300 protein Q2QY92,Q6ESY1,A0A0P0XYS8 Q2QY92_ORYSJ,Q6ESY1_ORYSJ,A0A0P0XYS8_ORYSJ Os12g0128000 LOC_Os12g03440 Os12g0128000 OSNPB_120128000,Os02g0543200 Os02g0543200 OSNPB_020543200 P0472F10.22,Os11g0131300 OSNPB_110131300 ENOG411E3EU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os06g0521300 protein A3BC83 A3BC83_ORYSJ Os06g0521300 OsJ_21514 OSNPB_060521300 ENOG411E3ET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) Protein G1 (Protein ELONGATED EMPTY GLUME) Q8GVZ6 G1_ORYSJ G1 ELE Os07g0139300 LOC_Os07g04670 OJ1417_E01.118 P0495H05.58 DISRUPTION PHENOTYPE: Enlarged sterile lemma in florets of the spikelet, caused by homeotic transformation of the sterile lemma into a lemma. Elongated empty glumes, which mimic the lemmas and have the epidermal morphology of lemmas with four or five vascular bundles. {ECO:0000269|PubMed:19901325, ECO:0000269|PubMed:20227044}. FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). Transcription regulator that restrains empty glumes growth, lemmas of the sterile florets located at the lateral side of the rice spikelet, to maintain their small size, probably by repressing lemma identity via transcription regulation. {ECO:0000250, ECO:0000269|PubMed:19901325, ECO:0000269|PubMed:20227044}. ENOG411E3ES OFP4 F4HNU8 OFP4_ARATH Transcription repressor OFP4 (Ovate family protein 4) (AtOFP4) DISRUPTION PHENOTYPE: Moderate irregular xylem, but normal plant morphology. {ECO:0000269|PubMed:21457372, ECO:0000269|PubMed:21886836}. FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. Forms a transcription repression complex with KNAT7 which regulates secondary cell wall formation. {ECO:0000269|PubMed:15781858, ECO:0000269|PubMed:21457372, ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP4 show kidney-shaped cotyledons, round and curled leaves, small rosette size, late flowering, reduced fertilization and round seeds. {ECO:0000305|PubMed:21886836}. 36463 Transcription repressor OFP4 (Ovate family protein 4) (AtOFP4) nucleus [GO:0005634]; DNA binding [GO:0003677]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of secondary cell wall biogenesis [GO:2000652]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in root vascular cylinder, root tips, xylem of stems, flower buds and siliques. {ECO:0000269|PubMed:21457372, ECO:0000269|PubMed:21886836}. locus:2033060; AT1G06920 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E3ER VCC Q9ZV57 Q9ZV57_ARATH At2g32280 (GPI inositol-deacylase C, putative (DUF1218)) (Uncharacterized protein At2g32280) 17481 At2g32280 (GPI inositol-deacylase C, putative (DUF1218)) (Uncharacterized protein At2g32280) integral component of membrane [GO:0016021]; cotyledon development [GO:0048825]; cotyledon vascular tissue pattern formation [GO:0010588]; leaf vascular tissue pattern formation [GO:0010305]; phloem or xylem histogenesis [GO:0010087] locus:2062561; AT2G32280 Protein of unknown function (DUF1218) Os07g0545100 protein (cDNA clone:001-120-D03, full insert sequence) Q6ZL45 Q6ZL45_ORYSJ Os07g0545100 Os07g0545100 OJ1582_D10.23 OsJ_24634 OSNPB_070545100 ENOG411E3EQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS box protein Os05g0303400 protein B9FK57 B9FK57_ORYSJ Os05g0303400 OsJ_17968 OSNPB_050303400 ENOG411E3EP Q9LJ98 PFD2_ARATH Probable prefoldin subunit 2 FUNCTION: Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). {ECO:0000250}. 16526 Probable prefoldin subunit 2 cytoplasm [GO:0005737]; prefoldin complex [GO:0016272]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2077071; AT3G22480 prefoldin subunit KE2 family protein, expressed (Os12g0485800 protein) (cDNA clone:J013123O10, full insert sequence),KE2 family protein, expressed (Os11g0568500 protein) (cDNA clone:001-031-D04, full insert sequence) Q2QQS1,Q2R2E8 Q2QQS1_ORYSJ,Q2R2E8_ORYSJ LOC_Os12g30060 Os12g0485800 OsJ_36109 OSNPB_120485800,LOC_Os11g36050 Os11g0568500 OSNPB_110568500 ENOG411E3EZ PSB28 Q8W0Y8,F4JM05 PSB28_ARATH,F4JM05_ARATH Photosystem II reaction center PSB28 protein, chloroplastic (Photosystem II protein W-like),Photosystem II reaction center Psb28 protein 20192,21943 Photosystem II reaction center PSB28 protein, chloroplastic (Photosystem II protein W-like),Photosystem II reaction center Psb28 protein chloroplast thylakoid membrane [GO:0009535]; photosystem II oxygen evolving complex [GO:0009654]; photosynthesis [GO:0015979],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; photosynthesis [GO:0015979] locus:2139900; AT4G28660 Photosystem II reaction center PSB28 protein Photosystem II reaction center PSB28 protein, chloroplastic (Photosystem II protein W-like) Q0JG75 PSB28_ORYSJ PSB28 Os01g0938100 LOC_Os01g71190 OsJ_04705 P0504E02.24 ENOG411E3EY B9DG98,Q9LJR1,F4IYP9 B9DG98_ARATH,Q9LJR1_ARATH,F4IYP9_ARATH AT3G15351 protein (P53/DNA damage-regulated protein),At3g15351 (P53/DNA damage-regulated protein),P53/DNA damage-regulated protein 14910,18338,15150 AT3G15351 protein (P53/DNA damage-regulated protein),At3g15351 (P53/DNA damage-regulated protein),P53/DNA damage-regulated protein integral component of membrane [GO:0016021] locus:505006349; AT3G15351 NA Os07g0485600 protein (Fragment),Os06g0535333 protein (Fragment) A0A0P0X5P5,A0A0P0WXH0 A0A0P0X5P5_ORYSJ,A0A0P0WXH0_ORYSJ Os07g0485600 OSNPB_070485600,Os06g0535333 OSNPB_060535333 ENOG411E3EX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ripening-related protein Putative ripening-related protein 2,Putative ripening-related protein 1,Os02g0637000 protein (Fragment) Q6H5X0,Q7XVA8,A0A0P0VMC4 RIP2_ORYSJ,RIP1_ORYSJ,A0A0P0VMC4_ORYSJ Os02g0637000 LOC_Os02g42450 OJ1581_H09.18 OSJNBa0014E22.12,Os04g0364800 LOC_Os04g29550 OSJNBa0081G05.7,Os02g0637000 OSNPB_020637000 ENOG411ECPH Q9M2B3 BIG1C_ARATH Protein BIG GRAIN 1-like C FUNCTION: Involved in auxin transport. Regulator of the auxin signaling pathway. {ECO:0000250|UniProtKB:Q10R09}. 38960 Protein BIG GRAIN 1-like C plasma membrane [GO:0005886]; auxin transport [GO:0060918]; auxin-activated signaling pathway [GO:0009734]; positive regulation of auxin mediated signaling pathway [GO:0010929] locus:2099326; AT3G42800 NA NA NA NA NA NA NA NA ENOG411EHEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfite exporter TauE/SafE NA NA NA NA NA NA NA ENOG411EMJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMJ7 MSJ1.26 Q9FGF4 Q9FGF4_ARATH DNA polymerase V family 146115 DNA polymerase V family cytosol [GO:0005829]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; transcription, DNA-templated [GO:0006351] locus:2173423; AT5G64420 DNA polymerase phi NA NA NA NA NA NA NA ENOG411EMJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31) Q0J1Q7,A0A0P0XM79 Q0J1Q7_ORYSJ,A0A0P0XM79_ORYSJ Os09g0420100 Os09g0420100 OSNPB_090420100,Os09g0420000 OSNPB_090420000 ENOG411EMJT Q9LSS2 Q9LSS2_ARATH Emb|CAB75487.1 (Zinc finger (C3HC4-type RING finger) family protein) 73467 Emb|CAB75487.1 (Zinc finger (C3HC4-type RING finger) family protein) cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2143995; AT5G60250 IBR domain NA NA NA NA NA NA NA ENOG411EMJV O81849 O81849_ARATH RING/U-box superfamily protein (Uncharacterized protein AT4g19670) (Uncharacterized protein T16H5.30) 60343 RING/U-box superfamily protein (Uncharacterized protein AT4g19670) (Uncharacterized protein T16H5.30) cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2133935; AT4G19670 IBR domain NA NA NA NA NA NA NA ENOG411EMJW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EMJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EAR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAR6 MIJ24.14 F4KEH9 F4KEH9_ARATH Putative endonuclease or glycosyl hydrolase 8526 Putative endonuclease or glycosyl hydrolase peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468] locus:2164840; AT5G39640 Pfam:DUF88 NA NA NA NA NA NA NA ENOG411EAR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-dependent decarboxylase conserved domain Os08g0140300 protein (Putative Aromatic-L-amino-acid decarboxylase) (cDNA clone:J023003D15, full insert sequence),Os08g0140500 protein (Putative Aromatic-L-amino-acid decarboxylase) Q6ZJK7,Q6YZ18 Q6ZJK7_ORYSJ,Q6YZ18_ORYSJ Os08g0140300 Os08g0140300 OJ1368_G08.14 OsJ_25993 OSNPB_080140300,Os08g0140500 OJ1368_G08.18 OSNPB_080140500 P0473D02.3 ENOG411EAR0 Q9S9K1,F4JSW8 Q9S9K1_ARATH,F4JSW8_ARATH Galactose-binding protein (T23K8.12 protein),Rhamnogalacturonate lyase family protein 28633,76621 Galactose-binding protein (T23K8.12 protein),Rhamnogalacturonate lyase family protein carbohydrate binding [GO:0030246]; lyase activity [GO:0016829]; carbohydrate metabolic process [GO:0005975] locus:2200390;,locus:2121095; AT1G65210,AT4G38030 Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411EAR1 CYP94B3,CYP94B1 Q9SMP5,Q9FMV7,A0A1P8BDM6 C94B3_ARATH,C94B1_ARATH,A0A1P8BDM6_ARATH Cytochrome P450 94B3 (EC 1.14.-.-) (Jasmonoyl-isoleucine-12-hydroxylase),Cytochrome P450 94B1 (EC 1.14.-.-),Cytochrome P450, family 94, subfamily B, polypeptide 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants accumulate high amounts of JA-Ile and have strongly reduced levels of 12-hydroxy-JA-Ile in response to wounding. {ECO:0000269|PubMed:21576464, ECO:0000269|PubMed:21849397, ECO:0000269|PubMed:22215670}. FUNCTION: Hydroxylase involved in the oxidation of the plant hormone jasmonoyl-L-isoleucine (JA-Ile), a bioactive phytohormone of the jasmonate-mediated signaling pathway. Converts JA-Ile to 12-hydroxy-JA-Ile (PubMed:21576464, PubMed:21849397, PubMed:22215670). Exerts negative feedback control on JA-Ile levels and plays a key role in attenuation of jasmonate responses. Negatively regulates the expression of wound-induced genes TIFY11A/JAZ5, TIFY5A/JAZ8 and TIFY5A/JAZ10 (PubMed:21576464). Catalyzes the hydroxylation of jasmonoyl-L-valine (JA-Val), jasmonoyl-L-leucine (JA-Leu) and jasmonoyl-L-phenylalanine (JA-Phe) in vitro. Converts JA-Val, JA-Leu and JA-Phe to 12-hydroxy-JA-Val, 12-hydroxy-JA-Leu and 12-hydroxy-JA-Phe, respectively (PubMed:24467969). {ECO:0000269|PubMed:21576464, ECO:0000269|PubMed:21849397, ECO:0000269|PubMed:22215670, ECO:0000269|PubMed:24467969}.,FUNCTION: Hydroxylase involved in the oxidation of the plant hormone jasmonoyl-L-isoleucine (JA-Ile), a bioactive phytohormone of the jasmonate-mediated signaling pathway. Converts JA-Ile to 12-hydroxy-JA-Ile. {ECO:0000269|PubMed:25210037}. MISCELLANEOUS: Plants over-expressing CAP94B3 are deficient in jasmonate perception. {ECO:0000305|PubMed:21576464}.,MISCELLANEOUS: Plants overexpressing CYP94B1 are jasmonate insensitive and present developmental defects in all organs. {ECO:0000269|PubMed:25210037}. ARA:AT3G48520-MONOMER;ARA:GQT-519-MONOMER;MetaCyc:AT3G48520-MONOMER;,ARA:GQT-1370-MONOMER; 1.14.-.- 56933,57782,64662 Cytochrome P450 94B3 (EC 1.14.-.-) (Jasmonoyl-isoleucine-12-hydroxylase),Cytochrome P450 94B1 (EC 1.14.-.-),Cytochrome P450, family 94, subfamily B, polypeptide 1 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; jasmonoyl-isoleucine-12-hydroxylase activity [GO:0052694]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; anther development [GO:0048653]; defense response to insect [GO:0002213]; fruit development [GO:0010154]; jasmonic acid metabolic process [GO:0009694]; pollen development [GO:0009555]; response to wounding [GO:0009611]; stigma development [GO:0048480],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2114460;,locus:2167371; AT3G48520,AT5G63450 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EAR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAR3 T5P19_60 Q9LXZ9,A0A1I9LLR2,F4IZF5 Q9LXZ9_ARATH,A0A1I9LLR2_ARATH,F4IZF5_ARATH Uncharacterized protein T5P19_60,Uncharacterized protein 174655,159587,169408 Uncharacterized protein T5P19_60,Uncharacterized protein locus:2102559; AT3G56410 Protein of unknown function (DUF3133) NA NA NA NA NA NA NA ENOG411EAR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0130700 protein,Expressed protein (Os12g0127500 protein) (cDNA clone:002-112-G10, full insert sequence),Os11g0130600 protein B9G976,Q2QY96,A0A0P0XYR4 B9G976_ORYSJ,Q2QY96_ORYSJ,A0A0P0XYR4_ORYSJ Os11g0130700 OsJ_32815 OSNPB_110130700,LOC_Os12g03400 Os12g0127500 OsJ_35089 OSNPB_120127500,Os11g0130600 OSNPB_110130600 ENOG411EAR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EART NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cys/Met metabolism PLP-dependent enzyme NA NA NA NA NA NA NA ENOG411EARU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP NA NA NA NA NA NA NA ENOG411EARV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DIL NA NA NA NA NA NA NA ENOG411EARW F16P17.15 Q9LQ06,A0A1P8ANU8 Q9LQ06_ARATH,A0A1P8ANU8_ARATH F16P17.15 (Transmembrane protein, putative (DUF1191)),Transmembrane protein, putative (DUF1191) 37952,22927 F16P17.15 (Transmembrane protein, putative (DUF1191)),Transmembrane protein, putative (DUF1191) integral component of membrane [GO:0016021] locus:4515102709; AT1G62981 Protein of unknown function (DUF1191) NA NA NA NA NA NA NA ENOG411EARP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EARQ ERF112 P93007,F4IFX1 EF112_ARATH,F4IFX1_ARATH Ethylene-responsive transcription factor ERF112,Integrase-type DNA-binding superfamily protein FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 24297,25757 Ethylene-responsive transcription factor ERF112,Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2057594; AT2G33710 Transcription factor NA NA NA NA NA NA NA ENOG411EARR GL1 P27900 GL1_ARATH Trichome differentiation protein GL1 (Myb-related protein 0) (AtMYB0) (Protein GLABRA 1) (Protein GLABROUS 1) (R2R3-MYB transcription factor GL1) Mechanical wounding largely restore trichome formation of gl1-2 in jasmonate signaling-dependent manner.,early flowering; photoperiod-insensitive; long hypocotyl in light-grown seedlings; conditional circadian dysfunction; lacks trichomes on stems and leaves some trichomes in leaf margins.,early flowering; photoperiod-insensitive; long hypocotyl in light-grown seedlings; lacks trichomes on stems and leaves some trichomes in leaf margins.,The kyp-2 mutant has defects in callus formation under laboratory conditions. Many fewer seeds form calluses compared to wild type seeds and the calluses that do form are delayed and smaller in size. kyp-2 mutants are defective in the process known as alternative lengthening of telomeres a telomerase-independent process. These mutants also show a loss of association between K9-dimethylated H3 histones and telomeric and centromeric DNA via ChIP assays.,Wild type morphology; lacks the cytosine methylation at sites of CpNpG trinucleotides (where N is A C G or T); low level of expression of two retrotransposon-related sequences (Athila and Ta3 sequences); suppresses the clark kent allele clk-3; lacks trichomes on stems and leaves.,Adult plants wilt under dessicating conditions.,After bolting the wilty phenotype became evident in the shoot apex cauline leaves and immature siliques of this mutant. This phenotype was partially restored by application of 10 μM ABA to rosette leaves.,Approximately 40% of mutant seeds germinate after far red/red light treatment whereas wild type germination was suppressed almost entirely.,Endogenous ABA levels in fresh and dehydrated tissues of the mutant were about 23% and 2.4% respectively of those of the wild type plants.,Endogenous levels of 12 amino acids were at least 2-fold greater in wild-type than in the mutant plants after 18 h dehydration. Amino acids that exhibited marked increases were leucine (152-fold) isoleucine (95-fold) proline (83-fold) and valine (25-fold). Aspartic acid was the only amino acid which showed a significant reduction in wild-type plants during dehydration. In dehydrated tissues of the mutant 9 amino acids increased more than 2-fold during dehydration however the increases in the mutant plants were less pronounced than those in wild-type plants. Glycine and alanine showed greater increases in comparison to wild type whereas the levels of glutamic acid and aspartic acid showed a reduction in the mutant during dehydration.,Free amino acid levels in fresh tissues of the mutant plants at 30 DAI were similar to those in wild type however the level of proline in the mutant plants was 4-fold higher than that in wild type.,Germination of the mutant seeds after irradiation with far red light is inhibited by paclobutrazol an inhibitor of GA biosynthesis.,Mutant showed a similar sensitivity to 25 mM trehalose as wild type (inhibition of root growth).,Seeds have a reduced dormancy.,Several GA biosynthesis genes are upregulated in the mutant compared to wild type during seed development.,The mutant embryos are morphologically normal although mature embryos are more yellow compared to white wild-type embryos.,The mutant has smaller rosette leaves and mature plants are not yellowish as has been reported for abal mutants.,Under the reported growth conditions approximately 10% of the dark germinated seedlings of the mutant produced true leaves. The dark germinated seedlings of the mutant did not show further growth even after a prolonged period of darkness.,No visible phenotype compared to Col-0/gl1 wild-type.,Non-photochemical quenching (NPQ) is slightly increased in the mutant.,In contrast to the ku70 mutant which undergo telomerase-dependent expansion to more than twice the normal length in a single generation the ku70 tert double mutant displays accelerated telomere shortening and a precocious onset of genome stability.,Compared to wild type no secondary thickening or lignification is seen in the anther endothecium although other tissues in the mutant plant undergo normal secondary thickening. As the anther dehydrates the endothecium layer distorts shearing forces do not develop and the anther fails to open.,Male-sterile as a result of a failure of anther dehiscence.,reduced camalexin synthesis in response to infection.,Same degree of telomere shortening as in the pot1 ku70 and ku70 tert double mutants.,Telomeres in the double mutants shortened at the same rate as in either single mutant.,Telomeres of the same length and sharp banding profile were found in the double mutant as in their tert and pot1-1 siblings.,Decrease of macronutrients concentration in the MS salt formulation to 1/20X results in a substantial reduction in primary root growth.,Mutant grown in greenhouse or growth chamber exhibits reduced shoot and root biomass relative to the wild-type.,Mutant grown on Pi-deficient medium for 25 days accumulate more anthocyanins than wild-type.,Substantially more pronounced prototypical Pi starvation root architecture responses than sos3-1 or wild-type seedlings. On Pi-limited medium mutant seedlings exhibit an inhibition of primary root growth an increase of lateral root development and length and higher root/shoot fresh weight ratio than wild-type. Enhanced resistance to Pseudomonas syringae DC3000. Smaller in stature. Impaired drought tolerance.,Suppression of NaCl sensitivity of sos3-1 seedlings.,50% of the mitotic nuclei in anaphase from tert mutants with severe growth defects (in the G8 generation) have anaphase bridges while none are found in comparable wild type controls. These anaphase bridges occur disproportionately often between rDNA regions. A number of chromosomal defects can also be visualized during metaphase in these mutants. About 30% of the leaf mesophyll cells examined in tert G8 mutants have elevated numbers of nucleoli.,No obvious phenotypic changes in the first (G1) or second (G2) generation. However starting in G1 the telomeric smear in AtTERT-deficient plants was replaced by several sharp bands. By G2 at least 11 discrete telomeric fragments were visible.,urm23 enhances the hypomorphic gl1-2 allele and results in almost complete glabrousness (loss of trichomes) in normal growth condition. urm23 gl1-2 double mutant does not increase trichomes at all in response to wounding or methyl jasmonate treatment. urm23 is dominant in gl1-2 background. gl1-2 is incompletely dominant in urm23 background.,urm9 enhances the hypomorphic gl1-2 allele and results in almost complete glabrousness (loss of trichomes) in normal growth condition. urm9 gl1-2 double mutant shows strong but not complete defect in wounding and jasmonate-induced increase of trichomes. GL3-GFP fusion protein is mis-localized in a subset of urm9 gl1-2 epidermal cell nuclei. urm9 is recessive in gl1-2 background. gl1-2 is incompletely dominant in urm9 background. Reduced, abnormal trichomes-D. Marks-1989 FUNCTION: Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in leaves. Together with TTG1 and GL3, promotes trichome formation and endoreplication. Regulates the production of a signal that induces hair (trichome) precursor cells on leaf primordia to differentiate. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes (By similarity). {ECO:0000250, ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12356720, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15728674, ECO:0000269|PubMed:9625690}. 26339 Trichome differentiation protein GL1 (Myb-related protein 0) (AtMYB0) (Protein GLABRA 1) (Protein GLABROUS 1) (R2R3-MYB transcription factor GL1) nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell fate specification [GO:0001708]; gibberellic acid mediated signaling pathway [GO:0009740]; jasmonic acid mediated signaling pathway [GO:0009867]; regulation of protein localization [GO:0032880]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of trichome morphogenesis [GO:2000039]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026]; trichome patterning [GO:0048629] DEVELOPMENTAL STAGE: Ubiquitous in young leaves primordia. Becomes more prominent in developing trichome cells but disappears progressively when trichomes begin to initiate branches. {ECO:0000269|PubMed:15728674}. TISSUE SPECIFICITY: Expressed in leaves, stems and flowers (PubMed:11437443). Expressed in trichome cells and in leaf primordia (PubMed:9625690). {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:9625690}. locus:2086475; AT3G27920 trichome differentiation protein GL1 NA NA NA NA NA NA NA ENOG411EARS HMG2 P43256 HMDH2_ARATH 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (AtHMGR2) (HMG-CoA reductase 2) (EC 1.1.1.34) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but 25% lower levels in triterpenoids content and 15% lower levels in sterol content. Hmg1 and hmg2 double mutants are lethal during male gametophyte development. {ECO:0000269|PubMed:14871314, ECO:0000269|PubMed:17917299, ECO:0000269|PubMed:19363204}. The hmg2 mutant has about 15% lower sterol levels than wild type plants but its sterol composition is normal. It also has about a 25% drop in triterpenoid levels compared to wild-type plants. FUNCTION: Catalyzes the synthesis of mevalonate. The specific precursor of all isoprenoid compounds present in plants. {ECO:0000269|PubMed:14871314, ECO:0000269|PubMed:17917299, ECO:0000269|PubMed:19041104, ECO:0000269|PubMed:19363204}. PATHWAY: Metabolic intermediate biosynthesis; (R)-mevalonate biosynthesis; (R)-mevalonate from acetyl-CoA: step 3/3. R-ATH-191273; Biosynthesis of secondary metabolites (01110),Bile secretion (04976),Terpenoid backbone biosynthesis (00900),Metabolic pathways (01100) 1.1.1.34 60715 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (AtHMGR2) (HMG-CoA reductase 2) (EC 1.1.1.34) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; peroxisomal membrane [GO:0005778]; hydroxymethylglutaryl-CoA reductase (NADPH) activity [GO:0004420]; hydroxymethylglutaryl-CoA reductase activity [GO:0042282]; NADP binding [GO:0050661]; coenzyme A metabolic process [GO:0015936]; isoprenoid biosynthetic process [GO:0008299]; sterol biosynthetic process [GO:0016126]; triterpenoid biosynthetic process [GO:0016104] TISSUE SPECIFICITY: Restricted to young seedlings, roots, and inflorescences. Expressed in root tips, shoot apex, secretory zone of the stigma, microspores, mature pollen grains, gynoecium vascular tissue and fertilized ovules. {ECO:0000269|PubMed:19363204, ECO:0000269|PubMed:7780305, ECO:0000269|PubMed:8302869}. locus:2827622; AT2G17370 3-hydroxy-3-methylglutaryl-coa reductase 2 NA NA NA NA NA NA NA ENOG411EARX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Translation-initiation factor 2 NA NA NA NA NA NA NA ENOG411EARY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase Os05g0448300 protein (cDNA, clone: J065058J01, full insert sequence) B7F8I5 B7F8I5_ORYSJ Os05g0448300 OsJ_18734 OSNPB_050448300 ENOG411EARZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA domain (Cdc48 subfamily) NA NA NA NA NA NA NA ENOG411EARD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os05g0153066 protein,Os05g0153132 protein (Fragment) A0A0P0WIA0,A0A0P0WI20 A0A0P0WIA0_ORYSJ,A0A0P0WI20_ORYSJ Os05g0153066 OSNPB_050153066,Os05g0153132 OSNPB_050153132 ENOG411EARE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EARF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411EARG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl-CoA dehydrogenase middle domain NA NA NA NA NA NA NA ENOG411EARA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3475) NA NA NA NA NA NA NA ENOG411EARB ABCG41,ABCG30 Q7PC83,Q8GZ52,A0A1P8B7J2,A0A1P8B7G0,A0A1P8B5R0,A0A1P8B5S3 AB41G_ARATH,AB30G_ARATH,A0A1P8B7J2_ARATH,A0A1P8B7G0_ARATH,A0A1P8B5R0_ARATH,A0A1P8B5S3_ARATH ABC transporter G family member 41 (ABC transporter ABCG.41) (AtABCG41) (Pleiotropic drug resistance protein 13),ABC transporter G family member 30 (ABC transporter ABCG.30) (AtABCG30) (Pleiotropic drug resistance protein 2),Pleiotropic drug resistance 13,Pleiotropic drug resistance 2 Abnormal root exudate profiles-J. Vivanco-2009 FUNCTION: May be a general defense protein. {ECO:0000250}. 157239,157768,157038,156386,148798,148882 ABC transporter G family member 41 (ABC transporter ABCG.41) (AtABCG41) (Pleiotropic drug resistance protein 13),ABC transporter G family member 30 (ABC transporter ABCG.30) (AtABCG30) (Pleiotropic drug resistance protein 2),Pleiotropic drug resistance 13,Pleiotropic drug resistance 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; drug transmembrane transport [GO:0006855]; transport [GO:0006810],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810] TISSUE SPECIFICITY: Confined to roots. {ECO:0000269|PubMed:12430018}. locus:2129830; AT4G15215,AT4G15230 Plant PDR ABC transporter associated NA NA NA NA NA NA NA ENOG411EARC BHLH103 Q8VZ22 BH103_ARATH Transcription factor bHLH103 (Basic helix-loop-helix protein 103) (AtbHLH103) (bHLH 103) (Transcription factor EN 62) (bHLH transcription factor bHLH103) 34032 Transcription factor bHLH103 (Basic helix-loop-helix protein 103) (AtbHLH103) (bHLH 103) (Transcription factor EN 62) (bHLH transcription factor bHLH103) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Mature root endodermis. {ECO:0000269|PubMed:16581911}. locus:2141216; AT4G21340 HLH NA NA NA NA NA NA NA ENOG411EARM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EARN CKL5 Q9ZUP4 CKL5_ARATH Casein kinase 1-like protein 5 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 5) FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins. {ECO:0000250|UniProtKB:P48730}. 2.7.11.1 48921 Casein kinase 1-like protein 5 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360] locus:2050409; AT2G19470 STYKc NA NA NA NA NA NA NA ENOG411EARH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectate lyase NA NA NA NA NA NA NA ENOG411EARI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DZC NA NA NA NA NA NA NA ENOG411EARJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EARK MWF20.16 P93824,A0A1P8BH67 ACCH6_ARATH,A0A1P8BH67_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT1G04350-MONOMER; 1.14.-.- 40797,32278 1-aminocyclopropane-1-carboxylate oxidase homolog 6 (EC 1.14.-.-),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Constitutively expressed in leaves and blades. {ECO:0000269|PubMed:12972669}. locus:2018349; AT1G04350 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EB9N WSCP Q9C7S6 WSCP_ARATH Cysteine protease inhibitor WSCP (Kunitz-type cysteine protease inhibitor WSCP) (Water-soluble chlorophyll protein) (AtWSCP) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:26016527}. FUNCTION: Water-soluble and chlorophyll-binding protein that probably does not function as a chloroplast chlorophyll carrier and is not involved in photosynthesis (PubMed:11577184, PubMed:26160583). Involved in the control of cell death in the transmitting tract and septum epidermis during flower development. Binds and inhibits the activity of the cysteine protease RD21A as a pro-death protein (PubMed:26160583). May play a role in herbivore resistance activation during seedling greening (PubMed:26016527). {ECO:0000269|PubMed:11577184, ECO:0000269|PubMed:26016527, ECO:0000269|PubMed:26160583}. 23096 Cysteine protease inhibitor WSCP (Kunitz-type cysteine protease inhibitor WSCP) (Water-soluble chlorophyll protein) (AtWSCP) apoplast [GO:0048046]; cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; peptidase inhibitor activity [GO:0030414]; defense response [GO:0006952]; negative regulation of peptidase activity [GO:0010466]; regulation of cell death [GO:0010941]; regulation of pollen tube growth [GO:0080092]; response to herbivore [GO:0080027]; response to insect [GO:0009625]; response to wounding [GO:0009611] DEVELOPMENTAL STAGE: During flower development, expressed in the transmitting tract of the septum from stage 12 to stage 15. {ECO:0000269|PubMed:26160583}. TISSUE SPECIFICITY: Expressed in vascular bundles of the carpels, the transmitting tract of the style and septum epidermis (PubMed:26160583). Expressed in etiolated seedlings (PubMed:26016527). {ECO:0000269|PubMed:26016527, ECO:0000269|PubMed:26160583}. locus:2207041; AT1G72290 STI NA NA NA NA NA NA NA ENOG411EG68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand NA NA NA NA NA NA NA ENOG411EG66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EG67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein light chain type 1 NA NA NA NA NA NA NA ENOG411EG64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0444566 protein (Fragment),Os04g0186450 protein (Fragment),Os01g0657250 protein,Os03g0136450 protein (Fragment),Os10g0444850 protein,Os03g0150550 protein,Os06g0325350 protein (Fragment),Os03g0150901 protein (Fragment) A0A0P0XUS1,A0A0P0W7B8,A0A0P0V634,A0A0P0VSZ0,A0A0P0XUS6,A0A0P0VT33,A0A0P0WVY6,A0A0P0VTA2 A0A0P0XUS1_ORYSJ,A0A0P0W7B8_ORYSJ,A0A0P0V634_ORYSJ,A0A0P0VSZ0_ORYSJ,A0A0P0XUS6_ORYSJ,A0A0P0VT33_ORYSJ,A0A0P0WVY6_ORYSJ,A0A0P0VTA2_ORYSJ Os10g0444566 OSNPB_100444566,Os04g0186450 OSNPB_040186450,Os01g0657250 OSNPB_010657250,Os03g0136450 OSNPB_030136450,Os10g0444850 OSNPB_100444850,Os03g0150550 OSNPB_030150550,Os06g0325350 OSNPB_060325350,Os03g0150901 OSNPB_030150901 ENOG411EG6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Os01g0949700 protein (Putative glutathione S-transferase) (cDNA clone:J023004F17, full insert sequence) (cDNA clone:J023124N01, full insert sequence) Q5JKX6 Q5JKX6_ORYSJ B1147A04.20-1 Os01g0949700 OsJ_04762 OSNPB_010949700 ENOG411EG6V DI19-5 O04259,F4JH94 DI195_ARATH,F4JH94_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 (AtDi19-5),Drought-responsive family protein 24547,26239 Protein DEHYDRATION-INDUCED 19 homolog 5 (AtDi19-5),Drought-responsive family protein nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16786289}. locus:2137819; AT4G02200 Pfam:Di19 NA NA NA NA NA NA NA ENOG411EG6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EG6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_BED NA NA NA NA NA NA NA ENOG411EG6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family NA NA NA NA NA NA NA ENOG411EG6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0158800 protein,Os04g0573200 protein Q0DUZ9,A0A0P0WDQ8 Q0DUZ9_ORYSJ,A0A0P0WDQ8_ORYSJ Os03g0158800 OSNPB_030158800,Os04g0573200 OSNPB_040573200 ENOG411EB9H A6 Q06915 EA6_ARATH Probable glucan endo-1,3-beta-glucosidase A6 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Anther-specific protein A6) (Beta-1,3-endoglucanase) (Protein MATERNAL EFFECT EMBRYO ARREST 48) DISRUPTION PHENOTYPE: Embryonic lethality due to division arrested at one-cell zygotic stage. {ECO:0000269|PubMed:15634699}. FUNCTION: Probable beta-1,3-glucanase that may be involved in the degradation of callose walls around the microspore tetrad during pollen development (Probable). May be required for pollen exine formation (PubMed:21849515). {ECO:0000269|PubMed:21849515, ECO:0000305|PubMed:8281185}. ARA:AT4G14080-MONOMER; 3.2.1.39 53472 Probable glucan endo-1,3-beta-glucosidase A6 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Anther-specific protein A6) (Beta-1,3-endoglucanase) (Protein MATERNAL EFFECT EMBRYO ARREST 48) anchored component of plasma membrane [GO:0046658]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952]; embryo development ending in seed dormancy [GO:0009793]; pollen exine formation [GO:0010584] TISSUE SPECIFICITY: Anthers. {ECO:0000269|PubMed:8281185}. locus:2129376; AT4G14080 X8 domain NA NA NA NA NA NA NA ENOG411EB9I TKL F4J0W8,A8MRY5 F4J0W8_ARATH,A8MRY5_ARATH TIC-like protein 105627,104915 TIC-like protein locus:2077239; AT3G63180 NA NA NA NA NA NA NA NA ENOG411EB9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EB9Q DUF10,DUF9,DUF8,DUF 10 Q9FFA0,Q9FFA2,F4KEA4,A0A1P8BG96,A0A1P8BCT9,F4KEA3 DUF10_ARATH,DUF9_ARATH,DUF8_ARATH,A0A1P8BG96_ARATH,A0A1P8BCT9_ARATH,F4KEA3_ARATH DUF724 domain-containing protein 10 (AtDUF10),DUF724 domain-containing protein 9 (AtDUF9),DUF724 domain-containing protein 8 (AtDUF8),Uncharacterized protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19795213}. same as smb-3 single mutant,Homozygotes have a WT phenotype FUNCTION: May be involved in the polar growth of plant cells via transportation of RNAs. {ECO:0000305|PubMed:19795213}. 63859,48445,47887,65181,48073,66330 DUF724 domain-containing protein 10 (AtDUF10),DUF724 domain-containing protein 9 (AtDUF9),DUF724 domain-containing protein 8 (AtDUF8),Uncharacterized protein regulation of growth [GO:0040008]; transport [GO:0006810],nucleus [GO:0005634]; regulation of growth [GO:0040008]; transport [GO:0006810],nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed at low levels in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:19795213}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:19795213}.,TISSUE SPECIFICITY: Expressed in leaves and flowers, and at lower levels in roots, stems and siliques. {ECO:0000269|PubMed:19795213}. locus:2172858;,locus:2172838;,locus:2172823; AT5G23800,AT5G23780,AT5G23770 Protein of unknown function (DUF724) NA NA NA NA NA NA NA ENOG411EB99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA binding motif protein 25 NA NA NA NA NA NA NA ENOG411DQCX ATJ3,ATJ2,J3 Q94AW8,P42825,F4J1V2 DNAJ3_ARATH,DNAJ2_ARATH,F4J1V2_ARATH Chaperone protein dnaJ 3 (AtDjA3) (AtJ3),Chaperone protein dnaJ 2 (AtDjA2),DNAJ homologue 3 Sensitive to a combination of salt and high pH-Y. Guo-2010 FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. R-ATH-3371497; 46444,46438,37675 Chaperone protein dnaJ 3 (AtDjA3) (AtJ3),Chaperone protein dnaJ 2 (AtDjA2),DNAJ homologue 3 cell wall [GO:0005618]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; photoperiodism, flowering [GO:0048573]; positive regulation of flower development [GO:0009911]; protein folding [GO:0006457]; regulation of ATPase activity [GO:0043462]; response to heat [GO:0009408]; response to salt stress [GO:0009651],cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to heat [GO:0009408],heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] TISSUE SPECIFICITY: Roots, shoots, flowers, siliques and cotyledons. {ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Expressed in both etiolated and light-grown tissues. {ECO:0000269|PubMed:7610169}. locus:2081378;,locus:505006628; AT3G44110,AT5G22060 DnaJ protein Chaperone protein dnaJ A6 (OsDjA6),Os02g0656500 protein,DNAJ-like protein (DnaJ protein) (DnaJ protein, putative) (DnaJ protein, putative, expressed) (Os03g0648400 protein) (cDNA clone:001-012-E01, full insert sequence),DnaJ protein, putative, expressed (Os03g0787300 protein) (Putative DnaJ like protein) (cDNA clone:001-023-E04, full insert sequence) (cDNA clone:006-205-G01, full insert sequence),Os12g0619100 protein,Os03g0648400 protein (Fragment),Os02g0656500 protein (Fragment),Os04g0549600 protein (Fragment) Q0JB88,Q0DYZ8,Q84PD0,Q6F3B0,A0A0P0YD84,A0A0P0W0Q4,A0A0P0VMI3,A0A0P0WD74 DJA6_ORYSJ,Q0DYZ8_ORYSJ,Q84PD0_ORYSJ,Q6F3B0_ORYSJ,A0A0P0YD84_ORYSJ,A0A0P0W0Q4_ORYSJ,A0A0P0VMI3_ORYSJ,A0A0P0WD74_ORYSJ DJA6 RNB8 Os04g0549600 LOC_Os04g46390 OsJ_15688 OSJNBb0034G17.1,Os02g0656500 Os02g0656500 OSNPB_020656500,Os03g0648400 LOC_Os03g44620 Os03g0648400 OsJ_11911 OSNPB_030648400,LOC_Os03g57340 Os03g0787300 OsJ_12871 OSJNBb0024J04.9 OSNPB_030787300,Os12g0619100 OSNPB_120619100,Os03g0648400 OSNPB_030648400,Os02g0656500 OSNPB_020656500,Os04g0549600 OSNPB_040549600 FUNCTION: Involved in disease resistance. Acts as negative regulator of innate immunity to the rice blast fungus (Magnaporthe oryzae). Acts as negative regulator of the pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) response through the inhibition of reactive oxygen species (ROS) accumulation and expression of defense-related genes. May function via the ubiquitin-proteasome degradation pathway. {ECO:0000269|PubMed:28220688}. MISCELLANEOUS: Plants silencing DJA6 display enhanced resistance to the rice blast fungus (Magnaporthe oryzae) and accumulate increased levels of reactive oxygen species after elicitation with flagellin (flg22) or chitin oligomer. {ECO:0000269|PubMed:28220688}. ENOG411DQCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family OSJNBb0089K06.1 protein (OSJNBb0115I21.2 protein) (Os04g0167800 protein) Q7X8G7 Q7X8G7_ORYSJ Os04g0167800 Os04g0167800 OSJNBb0089K06.1 OSJNBb0115I21.2 OSNPB_040167800 ENOG411DQCZ GALT4,GALT6,GALT2,GALT5,AGP galactosyltransferase 2,MRG21.3 Q8GXG6,Q9LV16,A7XDQ9,Q8RX55,F4JIK9,B3H4Y4,A0A1P8ATG4 B3GTH_ARATH,B3GTJ_ARATH,B3GTK_ARATH,B3GTI_ARATH,F4JIK9_ARATH,B3H4Y4_ARATH,A0A1P8ATG4_ARATH Hydroxyproline O-galactosyltransferase GALT4 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 17),Hydroxyproline O-galactosyltransferase GALT6 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 19),Hydroxyproline O-galactosyltransferase GALT2 (AtGALT2) (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 20),Hydroxyproline O-galactosyltransferase GALT5 (AtGALT5) (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 18),Galactosyltransferase family protein DISRUPTION PHENOTYPE: Reduced levels of arabinogalactan proteins. Root hair defects. Reduced seed sets. Increased sensitivity to salt stress. {ECO:0000269|PubMed:26690932}.,DISRUPTION PHENOTYPE: Reduced levels of arabinogalactan proteins. Root hair defects. Reduced seed sets. Reduced seed coat mucilage. Increased sensitivity to salt stress. Premature senescence. {ECO:0000269|PubMed:26690932}.,DISRUPTION PHENOTYPE: Reduced levels of arabinogalactan proteins (PubMed:26690932, PubMed:25974423). Defects in root hair growth, root elongation, pollen tube growth, flowering time, leaf development, silique length and inflorescence growth. Increased sensitivity to salt stress (PubMed:25974423). {ECO:0000269|PubMed:25974423, ECO:0000269|PubMed:26690932}.,DISRUPTION PHENOTYPE: Reduced levels of arabinogalactan proteins (PubMed:26690932). Defects in root hair growth, root elongation, pollen tube growth, flowering time, leaf development, silique length and inflorescence growth. Increased sensitivity to salt stress (PubMed:25974423). {ECO:0000269|PubMed:25974423, ECO:0000269|PubMed:26690932}. FUNCTION: Possesses hydroxyproline O-galactosyltransferase activity. Transfers galactose from UDP-galactose to hydroxyproline residues in the arabinogalactan proteins (AGPs). Is specific for AGPs containing non-contiguous peptidyl hydroxyproline residues. Utilizes UDP-galactose solely as sugar donor. The addition of galactose onto the peptidyl hydroxyproline residues in AGP core proteins represents the first committed step in arabinogalactan polysaccharide addition. AGP glycans play essential roles in both vegetative and reproductive plant growth. {ECO:0000269|PubMed:26690932}.,FUNCTION: Possesses hydroxyproline O-galactosyltransferase activity. Transfers galactose from UDP-galactose to hydroxyproline residues in the arabinogalactan proteins (AGPs). Is specific for AGPs containing non-contiguous peptidyl hydroxyproline residues. Utilizes UDP-galactose solely as sugar donor. The addition of galactose onto the peptidyl hydroxyproline residues in AGP core proteins represents the first committed step in arabinogalactan polysaccharide addition. AGP glycans play essential roles in both vegetative and reproductive plant growth. {ECO:0000269|PubMed:23430255, ECO:0000269|PubMed:25974423, ECO:0000269|PubMed:26690932}.,FUNCTION: Possesses hydroxyproline O-galactosyltransferase activity. Transfers galactose from UDP-galactose to hydroxyproline residues in the arabinogalactan proteins (AGPs). Is specific for AGPs containing non-contiguous peptidyl hydroxyproline residues. Utilizes UDP-galactose solely as sugar donor. The addition of galactose onto the peptidyl hydroxyproline residues in AGP core proteins represents the first committed step in arabinogalactan polysaccharide addition. AGP glycans play essential roles in both vegetative and reproductive plant growth. {ECO:0000269|PubMed:25974423, ECO:0000269|PubMed:26690932}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT5G62620-MONOMER;,ARA:AT4G21060-MONOMER; 2.4.1.- 77037,77741,77912,77348,84298,69577,73417 Hydroxyproline O-galactosyltransferase GALT4 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 17),Hydroxyproline O-galactosyltransferase GALT6 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 19),Hydroxyproline O-galactosyltransferase GALT2 (AtGALT2) (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 20),Hydroxyproline O-galactosyltransferase GALT5 (AtGALT5) (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 18),Galactosyltransferase family protein Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; arabinogalactan protein metabolic process [GO:0010405]; protein O-linked glycosylation via hydroxyproline [GO:0018258],chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; arabinogalactan protein metabolic process [GO:0010405]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; negative regulation of leaf senescence [GO:1900056]; protein O-linked glycosylation via hydroxyproline [GO:0018258],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; arabinogalactan protein metabolic process [GO:0010405]; protein O-linked glycosylation via hydroxyproline [GO:0018258]; root hair cell development [GO:0080147],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; carbohydrate binding [GO:0030246]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; arabinogalactan protein metabolic process [GO:0010405]; protein O-linked glycosylation via hydroxyproline [GO:0018258]; root hair cell development [GO:0080147],endomembrane system [GO:0012505]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; UDP-galactosyltransferase activity [GO:0035250]; arabinogalactan protein metabolic process [GO:0010405]; protein O-linked glycosylation via hydroxyproline [GO:0018258]; root hair cell development [GO:0080147],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; galactosyltransferase activity [GO:0008378]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Expressed in stems, cauline leaves and siliques. {ECO:0000269|PubMed:17630273}.,TISSUE SPECIFICITY: Expressed in junveile leaves and stems, and at lower levels in cauline leaves and siliques. {ECO:0000269|PubMed:17630273}.,TISSUE SPECIFICITY: Expressed in stems and at lower levels in cauline leaves and siliques. {ECO:0000269|PubMed:17630273}.,TISSUE SPECIFICITY: Expressed in juvenile leaves, stems, cauline leaves and siliques. {ECO:0000269|PubMed:17630273}. locus:2205774;,locus:2172219;,locus:2027290;,locus:2133094; AT1G27120,AT5G62620,AT4G21060,AT1G74800 Beta-13-galactosyltransferase Os08g0130900 protein B9FYX6 B9FYX6_ORYSJ Os08g0130900 OsJ_25935 OSNPB_080130900 ENOG411DQCP ATSYTF Q93ZM0 Q93ZM0_ARATH At3g18370/MYF24_8 (C2 domain-containing protein) 91132 At3g18370/MYF24_8 (C2 domain-containing protein) endoplasmic reticulum [GO:0005783] locus:2095062; AT3G18370 C2 domain Os01g0128800 protein A0A0P0UY24 A0A0P0UY24_ORYSJ Os01g0128800 OSNPB_010128800 ENOG411DQCQ Q8H0X2,F4ICB5 Q8H0X2_ARATH,F4ICB5_ARATH At1g18660 (Expressed protein) (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein R-ATH-983168; 55408,55925 At1g18660 (Expressed protein) (Zinc finger (C3HC4-type RING finger) family protein),Zinc finger (C3HC4-type RING finger) family protein intracellular [GO:0005622]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209] locus:2035025; AT1G18660 Zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411DQCR Q9SZW3,O64476 Q9SZW3_ARATH,O64476_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein AT4g30100) (Uncharacterized protein F6G3.130),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative DNA2-NAM7 helicase family protein) 145625,121522 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein AT4g30100) (Uncharacterized protein F6G3.130),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative DNA2-NAM7 helicase family protein) plasmodesma [GO:0009506]; hydrolase activity [GO:0016787],plasmodesma [GO:0009506]; helicase activity [GO:0004386] locus:2126480;,locus:2059088; AT4G30100,AT2G19120 tRNA-splicing endonuclease positive effector-related Os10g0118900 protein (Fragment) Q0IZ90,A0A0P0XR87 Q0IZ90_ORYSJ,A0A0P0XR87_ORYSJ Os10g0118900 OSNPB_100118900 ENOG411DQCS Q67ZZ1,F4IJ31 Q67ZZ1_ARATH,F4IJ31_ARATH Uncharacterized protein At2g41020 (WW domain-containing protein),WW domain-containing protein R-ATH-72163; 49815,41526 Uncharacterized protein At2g41020 (WW domain-containing protein),WW domain-containing protein locus:2063250; AT2G41020 WW Os01g0916300 protein (Putative poly-glutamine tract-binding protein) (cDNA clone:J033118P14, full insert sequence),Os01g0916300 protein,Os01g0916300 protein (Fragment) Q5N817,Q0JGM1,A0A0P0VC23 Q5N817_ORYSJ,Q0JGM1_ORYSJ,A0A0P0VC23_ORYSJ P0004D12.32-2 Os01g0916300 P0413C03.6-2 OSNPB_010916300,Os01g0916300 Os01g0916300 OSNPB_010916300,Os01g0916300 OSNPB_010916300 ENOG411DQCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 Expressed protein (Os03g0708800 protein),Os03g0708800 protein Q53RK1,A0A0P0W1Y2,A0A0N7KHX1 Q53RK1_ORYSJ,A0A0P0W1Y2_ORYSJ,A0A0N7KHX1_ORYSJ Os03g0708800 LOC_Os03g50110 OSNPB_030708800,Os03g0708800 OSNPB_030708800 ENOG411DQCU SAG18 Q9C989,F4I8F7 Q9C989_ARATH,F4I8F7_ARATH At1g71190 (Senescence associated gene 18) (Uncharacterized protein F23N20.18),Senescence associated gene 18 32238,27574 At1g71190 (Senescence associated gene 18) (Uncharacterized protein F23N20.18),Senescence associated gene 18 integral component of membrane [GO:0016021]; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [GO:0016811]; ceramide metabolic process [GO:0006672],integral component of membrane [GO:0016021] locus:2026281; AT1G71190 Pfam:aPHC Membrane protein-like (Os01g0962200 protein) (cDNA clone:J013114K13, full insert sequence) Q5JMS6 Q5JMS6_ORYSJ Os01g0962200 OsJ_04852 OSNPB_010962200 P0483G10.23 ENOG411DQCV Q3EAF9,A0A1I9LSG6 P2C49_ARATH,A0A1I9LSG6_ARATH Probable protein phosphatase 2C 49 (AtPP2C49) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 41968,32598 Probable protein phosphatase 2C 49 (AtPP2C49) (EC 3.1.3.16),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2098018; AT3G62260 phosphatase 2C Probable protein phosphatase 2C 2 (OsPP2C02) (EC 3.1.3.16),Probable protein phosphatase 2C 47 (OsPP2C47) (EC 3.1.3.16) Q9FYN7,Q6AUQ4 P2C02_ORYSJ,P2C47_ORYSJ Os01g0295700 LOC_Os01g19130 OsJ_001369 P0702D12.28,Os05g0134200 LOC_Os05g04360 OSJNBa0077L08.15 P0519E07.3 ENOG411DQCW A0A1P8AQE1,F4IBK7,F4IBK8 A0A1P8AQE1_ARATH,F4IBK7_ARATH,F4IBK8_ARATH p-loop containing nucleoside triphosphate hydrolases superfamily protein 117600,116314,120260 p-loop containing nucleoside triphosphate hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2018561; AT1G65810 Inherit from KOG: tRNA-splicing endonuclease positive Os04g0582700 protein,Os04g0599650 protein A0A0P0WDY1,A0A0P0WE98 A0A0P0WDY1_ORYSJ,A0A0P0WE98_ORYSJ Os04g0582700 OSNPB_040582700,Os04g0599650 OSNPB_040599650 ENOG411DQCH A0A1P8AM51,Q9SMR7,Q8L768,Q8VZT1,Q9LP18,F4IA48 A0A1P8AM51_ARATH,Q9SMR7_ARATH,Q8L768_ARATH,Q8VZT1_ARATH,Q9LP18_ARATH,F4IA48_ARATH N-lysine methyltransferase,Hematological/neurological-like protein (Uncharacterized protein AT4g39860) (Uncharacterized protein T5J17.30),AT1G78150 protein (N-lysine methyltransferase) (Uncharacterized protein At1g78150),Hematological/neurological-like protein (Uncharacterized protein At4g39860),At1g35780/F14D7_9 (F14D7.8 protein) (N-lysine methyltransferase) (Uncharacterized protein At1g35780) 22904,32078,29679,31949,31071,33115 N-lysine methyltransferase,Hematological/neurological-like protein (Uncharacterized protein AT4g39860) (Uncharacterized protein T5J17.30),AT1G78150 protein (N-lysine methyltransferase) (Uncharacterized protein At1g78150),Hematological/neurological-like protein (Uncharacterized protein At4g39860),At1g35780/F14D7_9 (F14D7.8 protein) (N-lysine methyltransferase) (Uncharacterized protein At1g35780) methyltransferase activity [GO:0008168],cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2140000;,locus:2011375;,locus:2194764; AT4G39860,AT1G78150,AT1G35780 expressed protein OSJNBa0006M15.14 protein (Os04g0455600 protein) (cDNA clone:J033145I18, full insert sequence),Os02g0574600 protein Q7XRF3,Q69S88 Q7XRF3_ORYSJ,Q69S88_ORYSJ Os04g0455600 Os04g0455600 OSJNBa0006M15.14 OSNPB_040455600,Os02g0574600 Os02g0574600 OsJ_07231 OSNPB_020574600 P0703B01.8 ENOG411DQCI F4JXM9 F4JXM9_ARATH Trafficking protein particle complex subunit-like protein R-ATH-8876198; 132228 Trafficking protein particle complex subunit-like protein locus:2152079; AT5G65950 trafficking protein particle complex subunit 11-like Os02g0714500 protein,Os02g0714500 protein (Fragment) Q6ZFT6,A0A0P0VNS2,A0A0P0VNW9 Q6ZFT6_ORYSJ,A0A0P0VNS2_ORYSJ,A0A0P0VNW9_ORYSJ OJ1479_B12.25-1 Os02g0714500 OJ1191_G08.1-1 OSNPB_020714500,Os02g0714500 OSNPB_020714500 ENOG411DQCJ PCMP-E1 P0C8Q2 PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191, mitochondrial 73409 Pentatricopeptide repeat-containing protein At4g19191, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:4515103421; AT4G19191 pentatricopeptide repeat-containing protein At4g19191 NA NA NA NA NA NA NA ENOG411DQCK Q9M9V4 Q9M9V4_ARATH F6A14.6 protein (Uncharacterized protein At1g18850) 43949 F6A14.6 protein (Uncharacterized protein At1g18850) nucleolus [GO:0005730]; rRNA processing [GO:0006364] locus:2034969; AT1G18850 NA Os01g0112100 protein (cDNA clone:J023061N16, full insert sequence) (cDNA clone:J023138H16, full insert sequence) Q0JRA3 Q0JRA3_ORYSJ Os01g0112100 Os01g0112100 OsJ_00099 OSNPB_010112100 ENOG411DQCM MFC19.21,MFC19.14,MFC19.13,MFC19.15,MFC19.20 O50072,Q9FHI2,Q9FHI9,Q9FHJ0,Q9FHI8,Q9FHI3 O50072_ARATH,Q9FHI2_ARATH,Q9FHI9_ARATH,Q9FHJ0_ARATH,Q9FHI8_ARATH,Q9FHI3_ARATH Transmembrane protein, putative (DUF594) (Uncharacterized protein AT4g19090),Transmembrane protein, putative (DUF594),Transmembrane protein, putative (DUF594) (Uncharacterized protein At5g45470),Transmembrane protein 86912,93233,100187,81722,100800,92272 Transmembrane protein, putative (DUF594) (Uncharacterized protein AT4g19090),Transmembrane protein, putative (DUF594),Transmembrane protein, putative (DUF594) (Uncharacterized protein At5g45470),Transmembrane protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2117204;,locus:2163518;,locus:2163543;,locus:2163523;,locus:2163558;,locus:2163598; AT4G19090,AT5G45540,AT5G45470,AT5G45460,AT5G45480,AT5G45530 expressed protein Expressed protein (Os11g0639300 protein) (cDNA clone:J033081M11, full insert sequence),Os01g0953100 protein,Os07g0109100 protein,Os01g0798800 protein (cDNA clone:002-105-C11, full insert sequence),Expressed protein (Os10g0348600 protein),Expressed protein (Os11g0640500 protein),Os07g0105800 protein Q2R0M9,Q5JL05,Q8LIN0,Q5VQJ1,Q8LM59,Q2R0M4,A0A0P0X1T3 Q2R0M9_ORYSJ,Q5JL05_ORYSJ,Q8LIN0_ORYSJ,Q5VQJ1_ORYSJ,Q8LM59_ORYSJ,Q2R0M4_ORYSJ,A0A0P0X1T3_ORYSJ LOC_Os11g42030 Os11g0639300 OsJ_34561 OSNPB_110639300,Os01g0953100 Os01g0953100 OSNPB_010953100 P0431G06.18,OJ1567_G09.114 P0585H11.129 Os07g0109100 OSNPB_070109100,Os01g0798800 OsJ_03757 OSNPB_010798800 P0691E06.14,Os10g0348600 OSJNBb0078C13.3 LOC_Os10g20770 Os10g0348600 OsJ_31184 OSJNAb0078C13.3 OSNPB_100348600,Os11g0640500 LOC_Os11g42080 OsJ_34567 OSNPB_110640500,Os07g0105800 OSNPB_070105800 ENOG411DQCN O82616 SCRK5_ARATH Probable fructokinase-5 (EC 2.7.1.4) FUNCTION: May play an important role in maintaining the flux of carbon towards starch formation. {ECO:0000250|UniProtKB:Q6XZ79}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT4G10260-MONOMER; Starch and sucrose metabolism (00500),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 2.7.1.4 34688 Probable fructokinase-5 (EC 2.7.1.4) ATP binding [GO:0005524]; fructokinase activity [GO:0008865]; starch biosynthetic process [GO:0019252] locus:2122789; AT4G10260 May play an important role in maintaining the flux of carbon towards starch formation Fructokinase-2 (EC 2.7.1.4) (Fructokinase II) (OsFKII),Os08g0113100 protein (Fragment) Q0J8G4,A0A0P0XB45 SCRK2_ORYSJ,A0A0P0XB45_ORYSJ FRK2 FKII Os08g0113100 LOC_Os08g02120 OsJ_024778 P0498H04.29,Os08g0113100 OSNPB_080113100 FUNCTION: May play an important role in maintaining the flux of carbon towards starch formation in endosperm. May also be involved in a sugar-sensing pathway. ENOG411DQCA F4ITW1 F4ITW1_ARATH 5'-nucleotidase / magnesium ion binding protein 39299 5'-nucleotidase / magnesium ion binding protein cytosol [GO:0005829]; 5'-nucleotidase activity [GO:0008253]; magnesium ion binding [GO:0000287] locus:2064113; AT2G38680 Cytosolic 5'-nucleotidase Os03g0648900 protein (Pyrimidine 5'-nucleotidase family protein, expressed) (Pyrimidine 5'-nucleotidase-related) (cDNA clone:J013136J16, full insert sequence),Os03g0648900 protein Q60DI6,A0A0P0W1E1 Q60DI6_ORYSJ,A0A0P0W1E1_ORYSJ Os03g0648900 LOC_Os03g44660 OSNPB_030648900,Os03g0648900 OSNPB_030648900 ENOG411DQCB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os06g0352200 protein (cDNA clone:J023111G24, full insert sequence) Q69SN5 Q69SN5_ORYSJ Os06g0352200 Os06g0352200 OSJNBa0022O02.10 OSNPB_060352200 ENOG411DQCC XI-H,XI-1,XI-2,XI-B,XI-K,XIB,XIK,HDK,MYA2 F4JM19,Q39160,Q9LKB9,F4I460,F4K5J1,Q5EAF0,A0A1P8BCA8,A0A1P8BCC2,A0A1P8BCA5,A0A1P8BCE2,A0A1P8BCC0,A0A1P8ARX4,A0A1P8BCB8,A0A1P8BCY2,F4K5I9,F4K5I5,F4K7C5,F4K7C4,F4K5I6 MYO14_ARATH,MYO5_ARATH,MYO6_ARATH,MYO8_ARATH,MYO17_ARATH,Q5EAF0_ARATH,A0A1P8BCA8_ARATH,A0A1P8BCC2_ARATH,A0A1P8BCA5_ARATH,A0A1P8BCE2_ARATH,A0A1P8BCC0_ARATH,A0A1P8ARX4_ARATH,A0A1P8BCB8_ARATH,A0A1P8BCY2_ARATH,F4K5I9_ARATH,F4K5I5_ARATH,F4K7C5_ARATH,F4K7C4_ARATH,F4K5I6_ARATH Myosin-14 (Myosin XI H) (AtXIH),Myosin-5 (AtMYA1),Myosin-6 (AtMYA2),Myosin-8 (Myosin XI B) (AtXIB),Myosin-17 (Myosin XI K) (AtXIK),At5g20450 (Myosin),Myosin,Myosin XI B,Myosin family protein with Dil,Myosin 2 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18178669, ECO:0000269|PubMed:19060218}.,DISRUPTION PHENOTYPE: Impaired growth of root hair cells (PubMed:18178669). No visible phenotype (PubMed:15792961). {ECO:0000269|PubMed:15792961, ECO:0000269|PubMed:18178669, ECO:0000269|PubMed:19060218}.,DISRUPTION PHENOTYPE: Impaired growth of root hair cells, twisted shape of stem trichomes, and irregular size, branch positioning, and branch expansion of leaf trichomes. Affected organization of the ER network and orientation of the actin filament bundles. {ECO:0000269|PubMed:17458634, ECO:0000269|PubMed:18178669, ECO:0000269|PubMed:19060218, ECO:0000269|PubMed:20351265}. There are no obvious defects in the aerial tissues roots or root hairs of xi-1 mutant plants grown under normal conditions. There are also no obvious defects in organelle trafficking except for a slight effect on peroxisome movement. Double mutant analysis reveals a greater role for XI-1 in organelle movement and plant development (see xik-2/xi-1).,The xi-k / xi-1 double mutant plants are shorter and have smaller rosettes than wild type plants. Their reduced leaf size results from decreased cell size and decreased cell number. These double mutants produce fewer seeds per silique than wild type plants. In the leaf epidermis Golgi stacks peroxisomes and mitochondria move more slowly in these mutant cells than in wild-type cells. Root hair length is reduced to ~35% of the wild type root hair length in these double mutants but their root hair density is very similar to the wild type density.,There are no obvious defects in the aerial tissues of xi-2 mutant plants grown under normal conditions. The root length of the mutant is also normal but it has shorter roots hairs than wild-type plants.,The overall growth of the xi-2 / xi-b double mutant is normal. In the leaf epidermis Golgi stacks and peroxisomes move more slowly in these mutant cells than in wild-type cells. The rate of mitochondrial movement is also slightly reduced. Root hair length is reduced to ~15% of the wild type root hair length in these double mutants but their root hair density is very similar to the wild type density.,The overall growth of the xi-k / xi-2 double mutant is normal. In the leaf epidermis Golgi stacks peroxisomes and mitochondria move more slowly in these mutant cells than in wild-type cells. Root hair length is reduced to ~20% of the wild type root hair length in these double mutants but their root hair density is very similar to the wild type density.,There are no obvious defects in the aerial tissues roots or root hairs of xi-b mutant plants grown under normal conditions. There are also no obvious defects in organelle trafficking. Double mutant analysis reveals a role for xi-b in root hair elongation (see xi-2/xi-b).,There are no obvious defects in the aerial tissues roots or root hairs of xi-b mutant plants grown under normal conditions. There are also no obvious defects in organelle trafficking. Double mutant analysis reveals a role for xi-b in root hair elongation (see xi-2/xi-b),The xik-2 mutant has normal root growth but its root hairs are only 50% of the length of wild type root hairs and they have a hooked shape when grown on media with sugar. The stem trichomes are crooked and wavy and often have abnormally elongated stalks. The trichomes on the leaves also have size and shape irregularities. But the total number of trichomes is the same for mutants and wild-type plants.,There are no obvious defects in the aerial tissues of xi-k mutant plants grown under normal conditions. The root length of the mutant is also normal but it has shorter roots hairs than wild-type plants. There are decreased rates of movement of Golgi stacks peroxisomes and mitochondria in root hairs and leaves.,The xik-1 mutant has normal root growth but its root hairs are only 49% of the length of wild type root hairs and they have a hooked shape when grown on media with sugar. The stem trichomes are crooked and wavy and often have abnormally elongated stalks. The trichomes on the leaves also have size and shape irregularities. But the total number of trichomes is the same for mutants and wild-type plants.,There are no obvious defects in the aerial tissues of xi-k mutant plants grown under normal conditions. The root length of the mutant is also normal but it has shorter roots hairs than wild-type plants.,The xik-3 mutant has normal root growth but its root hairs are only 77% of the length of wild type root hairs and they have a hooked shape when grown on media with sugar. The stem trichomes are crooked and wavy and often have abnormally elongated stalks. The trichomes on the leaves also have size and shape irregularities. But the total number of trichomes is the same for mutants and wild-type plants. FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250}.,FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Contributes to the trafficking of Golgi stacks, mitochondria and peroxisomes. Required for development of pavement cells, trichomes, and stigmatic papillae. {ECO:0000269|PubMed:17504816, ECO:0000269|PubMed:19060218, ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:20581304, ECO:0000269|PubMed:21914656, ECO:0000269|PubMed:22672737}.,FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Involved in the tip growth of root hair cells. Plays a major role in trafficking of Golgi stacks, mitochondria and peroxisomes during root hair development. Targets the peroxisome through an interaction with RABC2A. Required for development of pavement cells, trichomes, and stigmatic papillae. {ECO:0000269|PubMed:15792961, ECO:0000269|PubMed:18178669, ECO:0000269|PubMed:19060218, ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:20581304, ECO:0000269|PubMed:21914656, ECO:0000269|PubMed:22672737}.,FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. {ECO:0000269|PubMed:20581304}.,FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Involved in the tip growth of root hair cells and in the elongation of trichome stalk and branches. Plays a major role in trafficking of Golgi stacks, mitochondria and peroxisomes during root hair development. Acts as the primary contributor to ER streaming with a major role in the movement of Golgi bodies. Required for development of pavement cells, trichomes, and stigmatic papillae. {ECO:0000269|PubMed:17458634, ECO:0000269|PubMed:18178669, ECO:0000269|PubMed:18503043, ECO:0000269|PubMed:19060218, ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:20351265, ECO:0000269|PubMed:20581304, ECO:0000269|PubMed:21914656, ECO:0000269|PubMed:22672737}. 172155,172908,169931,169493,173377,38003,33097,42020,30495,40484,40400,157421,35489,166509,63515,38787,176864,176522,35573 Myosin-14 (Myosin XI H) (AtXIH),Myosin-5 (AtMYA1),Myosin-6 (AtMYA2),Myosin-8 (Myosin XI B) (AtXIB),Myosin-17 (Myosin XI K) (AtXIK),At5g20450 (Myosin),Myosin,Myosin XI B,Myosin family protein with Dil,Myosin 2 myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],cytoplasm [GO:0005737]; myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; identical protein binding [GO:0042802]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048]; cell division [GO:0051301]; cell growth [GO:0016049]; fruit development [GO:0010154]; Golgi localization [GO:0051645]; gynoecium development [GO:0048467]; leaf pavement cell development [GO:0090436]; mitochondrion localization [GO:0051646]; peroxisome localization [GO:0060151]; post-embryonic development [GO:0009791]; trichome morphogenesis [GO:0010090],cytoplasm [GO:0005737]; myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774],cytoplasm [GO:0005737]; myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],myosin complex [GO:0016459]; plasmodesma [GO:0009506]; root hair tip [GO:0035619]; transport vesicle [GO:0030133]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048]; Golgi localization [GO:0051645]; gynoecium development [GO:0048467]; leaf pavement cell development [GO:0090436]; mitochondrion localization [GO:0051646]; peroxisome localization [GO:0060151]; root hair cell tip growth [GO:0048768]; root hair elongation [GO:0048767]; trichome branching [GO:0010091]; trichome morphogenesis [GO:0010090],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774],myosin complex [GO:0016459]; ATP binding [GO:0005524]; motor activity [GO:0003774],integral component of membrane [GO:0016021],myosin complex [GO:0016459]; peroxisome [GO:0005777]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048]; Golgi localization [GO:0051645]; gynoecium development [GO:0048467]; leaf pavement cell development [GO:0090436]; mitochondrion localization [GO:0051646]; peroxisome localization [GO:0060151]; root hair elongation [GO:0048767]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed in flowers, leaves, roots and stems. {ECO:0000269|PubMed:7811972}.,TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:17458634}. locus:2117768;,locus:2007938;,locus:2020270;,locus:2149932;,locus:2149912;,locus:2149892;,locus:2149529; AT4G28710,AT1G17580,AT5G43900,AT1G04160,AT5G20490,AT5G20450,AT5G20470 myosin xi Os03g0686300 protein (Fragment) A0A0P0W1J8 A0A0P0W1J8_ORYSJ Os03g0686300 OSNPB_030686300 ENOG411DQCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase AAA family protein Os11g0244300 protein (Fragment),Os12g0209300 protein C7J8K4,A0A0P0Y837 C7J8K4_ORYSJ,A0A0P0Y837_ORYSJ Os11g0244300 OSNPB_110244300,Os12g0209300 OSNPB_120209300 ENOG411DQCE PCMP-E34 Q1PFQ9 PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690, mitochondrial 58138 Pentatricopeptide repeat-containing protein At1g28690, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2018668; AT1G28690 Pentatricopeptide repeat-containing protein Os03g0369700 protein (Fragment) A0A0P0VXU3 A0A0P0VXU3_ORYSJ Os03g0369700 OSNPB_030369700 ENOG411DQCF Q9ZW12,Q9LHT0 TRNH5_ARATH,TRNHF_ARATH Tropinone reductase homolog At2g29260, chloroplastic (EC 1.1.1.-),Tropinone reductase homolog At5g06060 (EC 1.1.1.-) ARA:AT2G29260-MONOMER;,ARA:AT5G06060-MONOMER; 1.1.1.- 35238,28292 Tropinone reductase homolog At2g29260, chloroplastic (EC 1.1.1.-),Tropinone reductase homolog At5g06060 (EC 1.1.1.-) chloroplast [GO:0009507]; oxidoreductase activity [GO:0016491],cytosol [GO:0005829]; oxidoreductase activity [GO:0016491] locus:2043087;,locus:2152815; AT2G29260,AT5G06060 Tropinone reductase Os03g0269100 protein (Tropinone reductase, putative, expressed) (cDNA clone:001-018-F07, full insert sequence),Os03g0268900 protein (Tropinone reductase, putative, expressed) (cDNA clone:J013012E01, full insert sequence),Os03g0269000 protein (Tropinone reductase, putative, expressed) (cDNA clone:001-046-B08, full insert sequence) (cDNA clone:J013002I11, full insert sequence),Os03g0268900 protein (Tropinone reductase, putative, expressed) (cDNA clone:002-188-E03, full insert sequence),Os03g0269100 protein (Tropinone reductase, putative, expressed) Q10NH1,Q10NH7,Q10NH4,Q10NH6,Q84JJ3 Q10NH1_ORYSJ,Q10NH7_ORYSJ,Q10NH4_ORYSJ,Q10NH6_ORYSJ,Q84JJ3_ORYSJ LOC_Os03g16230 Os03g0269100 OsJ_10279 OSNPB_030269100,Os03g0268900 LOC_Os03g16210 Os03g0268900 OsJ_10277 OSNPB_030268900,LOC_Os03g16220 Os03g0269000 OsJ_10278 OSNPB_030269000,Os03g0268900 LOC_Os03g16210 OSNPB_030268900,OSJNBa0071M09.10 Os03g0269100 LOC_Os03g16230 OJA1364E02.18 OSNPB_030269100 ENOG411DQCG PYR4 O04904 PYRC_ARATH Dihydroorotase, mitochondrial (DHOase) (EC 3.5.2.3) PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3. ARA:AT4G22930-MONOMER; 3.5.2.3; 3.5.2.3 41950 Dihydroorotase, mitochondrial (DHOase) (EC 3.5.2.3) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; dihydroorotase activity [GO:0004151]; metal ion binding [GO:0046872]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; 'de novo' UMP biosynthetic process [GO:0044205]; pyrimidine nucleotide biosynthetic process [GO:0006221] locus:2127168; AT4G22930 dihydroorotase Dihydroorotase, mitochondrial (DHOase) (EC 3.5.2.3) Q0JJD1 PYRC_ORYSJ PYRC Os01g0747500 LOC_Os01g54370 OsJ_03441 P0481E12.13 ENOG411DQC8 T4C21_260 Q9LZX9 Q9LZX9_ARATH At3g60850 (Uncharacterized protein At3g60850) (Uncharacterized protein T4C21_260) 72914 At3g60850 (Uncharacterized protein At3g60850) (Uncharacterized protein T4C21_260) locus:2101896; AT3G60850 NA Expressed protein (Os03g0247100 protein) (cDNA clone:J013114C24, full insert sequence) Q10P50 Q10P50_ORYSJ Os03g0247100 LOC_Os03g14290 Os03g0247100 OSNPB_030247100 ENOG411DQC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein Os01g0283700 protein (Putative cinnamoyl-CoA reductase),Os01g0283600 protein (Putative cinnamoyl-CoA reductase),Os09g0262000 protein Q9AQV6,Q7F721,A0A0P0XKI8 Q9AQV6_ORYSJ,Q7F721_ORYSJ,A0A0P0XKI8_ORYSJ OSJNBa0004B13.15 Os01g0283700 OSNPB_010283700 P0498A12.5 P0581F09.26,OSJNBa0004B13.14 Os01g0283600 OSNPB_010283600,Os09g0262000 OSNPB_090262000 ENOG411DQC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phytoene synthase NA NA NA NA NA NA NA ENOG411DQC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0155400 protein (Putative Phytosulfokine receptor),Os02g0155700 protein,Os02g0154800 protein,Os02g0155900 protein,Os02g0157200 protein,Os02g0156200 protein,Os02g0157000 protein,Os02g0156600 protein,Os02g0156633 protein (Fragment),Os02g0155750 protein,Os02g0154975 protein,Os02g0157100 protein,Os02g0155650 protein,Os02g0155600 protein,Os02g0515125 protein,Os02g0157501 protein Q67TW5,C7IZA1,A3A397,B9F2T6,Q0E3S5,A0A0P0VF17,A0A0P0VEY2,A0A0P0VEX0,A0A0P0VEY9,A0A0P0VF24,A0A0P0VET3,A0A0P0VEW1,A0A0N7KEQ2,A0A0P0VF15,A0A0P0VJH3,A0A0P0VET5 Q67TW5_ORYSJ,C7IZA1_ORYSJ,A3A397_ORYSJ,B9F2T6_ORYSJ,Q0E3S5_ORYSJ,A0A0P0VF17_ORYSJ,A0A0P0VEY2_ORYSJ,A0A0P0VEX0_ORYSJ,A0A0P0VEY9_ORYSJ,A0A0P0VF24_ORYSJ,A0A0P0VET3_ORYSJ,A0A0P0VEW1_ORYSJ,A0A0N7KEQ2_ORYSJ,A0A0P0VF15_ORYSJ,A0A0P0VJH3_ORYSJ,A0A0P0VET5_ORYSJ Os02g0155400 Os02g0155400 OSJNBb0032C09.27 OSNPB_020155400,Os02g0155700 Os02g0155700 OSNPB_020155700,Os02g0154800 OsJ_05423 OSNPB_020154800,Os02g0155900 OsJ_05430 OSNPB_020155900,Os02g0157200 Os02g0157200 OSNPB_020157200,Os02g0156200 OSNPB_020156200,Os02g0157000 OSNPB_020157000,Os02g0156600 OSNPB_020156600,Os02g0156633 OSNPB_020156633,Os02g0155750 OSNPB_020155750,Os02g0154975 OSNPB_020154975,Os02g0157100 OSNPB_020157100,Os02g0155650 OSNPB_020155650,Os02g0155600 OSNPB_020155600,Os02g0515125 OSNPB_020515125,Os02g0157501 OSNPB_020157501 ENOG411DQC2 Q5BPL5,F4JGU1 EI24_ARATH,F4JGU1_ARATH Protein EI24 homolog,Etoposide-induced protein 36208,34469 Protein EI24 homolog,Etoposide-induced protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; macroautophagy [GO:0016236],integral component of membrane [GO:0016021] locus:1005716216; AT4G06676 Protein EI24 homolog Os04g0433200 protein A0A0P0WAB6 A0A0P0WAB6_ORYSJ Os04g0433200 OSNPB_040433200 ENOG411DQC3 GH3.10,JAR1 Q9ZNS2,Q9SKE2,F4II77 GH310_ARATH,JAR1_ARATH,F4II77_ARATH Indole-3-acetic acid-amido synthetase GH3.10 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 10) (Protein DWARF IN LIGHT 2),Jasmonic acid-amido synthetase JAR1 (EC 6.3.2.-) (Jasmonate-amino acid synthetase JAR1) (Protein FAR-RED INSENSITIVE 219) (Protein JASMONATE RESISTANT 1),Auxin-responsive GH3 family protein DISRUPTION PHENOTYPE: Long hypocotyl phenotype under continuous far red (cFR) light. Suppression of COP1 disruption. Decreased sensitivity to jasmonic acid (JA) and methyl-jasmonate (MeJA) inhibition of root elongation, but increased sensitivity to abscisic acid during seed germination. Reduced induced systemic resistance (ISR) mediated by P.fluorescens (CHAOr and WCS417r) and P.putida LSW17S in roots toward H.parasitica and P.syringae pv. tomato in leaves. Increased susceptibility to the fungi P.irregulare, U.vignae and U.appendiculatus. Enhanced sensitivity to ozone O(3). Reduced fungal toxin fumonisin B1-mediated (FB1) induced apoptosis-like programmed cell death (PCD). Impaired SA-mediated, NPR1-independent resistance pathway. Reduced gene induction in resposne to chitin. Reduced PGIP2 accumulation upon B.cinerea infection leading to enhanced sensitivity. Altered defense activation by volatile compounds such as C6-aldehydes. Disrupted UV-B alteration of leaves attractiveness to diamondback moths P.xylostella, accompanied with reduced levels of UV-absorbing phenolic compounds. Reduced accumulation of JA-Ile conjugates in response to wounding, both locally and systemically. Compromised P.oligandrum cell wall protein fraction (CWP) induce systemic resistance against R.solanaceraum and P.syringae pv. tomato. Enhanced resistance to F.graminearum. {ECO:0000269|PubMed:10921909, ECO:0000269|PubMed:11006337, ECO:0000269|PubMed:11041879, ECO:0000269|PubMed:11041881, ECO:0000269|PubMed:11090217, ECO:0000269|PubMed:11607311, ECO:0000269|PubMed:12084835, ECO:0000269|PubMed:12236603, ECO:0000269|PubMed:12376653, ECO:0000269|PubMed:12509524, ECO:0000269|PubMed:12744510, ECO:0000269|PubMed:12848825, ECO:0000269|PubMed:14558686, ECO:0000269|PubMed:15879447, ECO:0000269|PubMed:16639567, ECO:0000269|PubMed:17220357, ECO:0000269|PubMed:17601164, ECO:0000269|PubMed:18247047, ECO:0000269|PubMed:19251652, ECO:0000269|PubMed:19304739, ECO:0000269|PubMed:19473329, ECO:0000269|PubMed:20521949, ECO:0000269|PubMed:9724702, ECO:0000269|PubMed:9807813}. JA-Ile levels are seven-fold lower in the jar1-1 mutant compared to wild type plants. The levels of JA JA-Val and JA-Leu are similar in the wild-type and mutant backgrounds whereas the level of JA-Phe and JA-ACC are higher in the mutant. Although this mutant is moderately insensitive to MeJA in root growth assays it is sensitive to JA-Ile.,The jar1-1 mutant shows moderate insensitivity to MeJA in root growth inhibition assays but it has normal male fertility.,The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance.,The mutant has reduced sensitivity to methyl jasmonate in root growth inhibition experiements. It also produces lower levels of jasmonyl-isoleucine (JA-Ile) than wild-type plants in response to wounding.,JA-Ile levels are roughly eight-fold lower in the jar1-8 mutant compared to wild type plants. The levels of JA JA-Val and JA-Leu are similar in the wild-type and mutant backgrounds whereas the level of JA-Phe and JA-ACC are higher in the mutant.,The jar1-8 mutant shows moderate insensitivity to MeJA in root growth inhibition assays. Long hypocotyl under far-red light; Insensitive to jasmonate-X. Deng-2000 FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin (By similarity). Involved in red light-specific hypocotyl elongation. May act downstream of a red light signal transduction and determine the degree of hypocotyl elongation (PubMed:14581632). {ECO:0000250|UniProtKB:Q9LSQ4, ECO:0000269|PubMed:14581632}.,FUNCTION: Catalyzes the synthesis of jasmonates-amino acid conjugates by adenylation; can use Ile and, in vitro at least, Val, Leu and Phe as conjugating amino acids on jasmonic acid (JA) and 9,10-dihydro-JA substrates, and to a lower extent, on 3-oxo-2-(2Z-pentenyl)-cyclopentane-1-butyric acid (OPC-4) and 12-hydroxy-JA (12-OH-JA). Can synthesize adenosine 5-tetraphosphate in vitro. Required for the JA-mediated signaling pathway that regulates many developmental and defense mechanisms, including growth root inhibition, vegetative storage proteins (VSPs) accumulation, induced systemic resistance (ISR), response to wounding and herbivores, tolerance to ozone O(3) (probably having a role in lesion containment). Plays an important role in the accumulation of JA-Ile in response to wounding, both locally and systemically; promotes JA responding genes especially in distal part of wounded plants, via the JA-Ile-stimulated degradation of JAZ repressor proteins by the SCF(COI)E3 ubiquitin-protein ligase pathway. Involved in the apoptosis-like programmed cell death (PCD) induced by fungal toxin fumonisin B1-mediated (FB1). Required for volatile compounds (C6-aldehydes and allo-ocimene)-mediated defense activation. Involved in the non-pathogenic rhizobacterium-mediated ISR (defense priming) by P.fluorescens (strains CHAOr and WCS417r) and P.putida LSW17S against infection leaf pathogens such as P.syringae pv. tomato and H.parasitica. Required for the JA-dependent resistance to fungi such as P.irregulare, U.vignae and U.appendiculatus. Necessary to induce systemic resistance against R.solanaceraum and P.syringae pv. tomato with P.oligandrum (a non-pathogenic biocontrol agent) cell wall protein fraction (CWP). Mediates PGIP2 accumulation in response to B.cinerea infection and thus contributes to resistance against this pathogen. Modulates the UV-B alteration of leaves attractiveness to diamondback moths P.xylostella leading to insect oviposition. Involved in the regulation of far-red light influence on development. Seems necessary for the salicylic acid (SA)-mediated, NPR1-independent resistance pathway. May contribute to the chitin-elicited pathway. Contributes to the sensitivity toward F.graminearum. {ECO:0000269|PubMed:10921909, ECO:0000269|PubMed:11006337, ECO:0000269|PubMed:11041879, ECO:0000269|PubMed:11041881, ECO:0000269|PubMed:11090217, ECO:0000269|PubMed:11607311, ECO:0000269|PubMed:12084835, ECO:0000269|PubMed:12236603, ECO:0000269|PubMed:12376653, ECO:0000269|PubMed:12509524, ECO:0000269|PubMed:12744510, ECO:0000269|PubMed:12848825, ECO:0000269|PubMed:14558686, ECO:0000269|PubMed:15258265, ECO:0000269|PubMed:15879447, ECO:0000269|PubMed:16639567, ECO:0000269|PubMed:17220357, ECO:0000269|PubMed:17291501, ECO:0000269|PubMed:17601164, ECO:0000269|PubMed:18247047, ECO:0000269|PubMed:19251652, ECO:0000269|PubMed:19304739, ECO:0000269|PubMed:19473329, ECO:0000269|PubMed:20521949, ECO:0000269|PubMed:9724702, ECO:0000269|PubMed:9807813}. ARA:GQT-2617-MONOMER;,ARA:AT2G46370-MONOMER; R-ATH-6798695; 6.3.2.- 66859,64350,65677 Indole-3-acetic acid-amido synthetase GH3.10 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 10) (Protein DWARF IN LIGHT 2),Jasmonic acid-amido synthetase JAR1 (EC 6.3.2.-) (Jasmonate-amino acid synthetase JAR1) (Protein FAR-RED INSENSITIVE 219) (Protein JASMONATE RESISTANT 1),Auxin-responsive GH3 family protein chloroplast [GO:0009507]; ligase activity [GO:0016874]; response to light stimulus [GO:0009416],cytoplasm [GO:0005737]; enzyme binding [GO:0019899]; jasmonate-amino synthetase activity [GO:0080123]; cellular response to auxin stimulus [GO:0071365]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; jasmonic acid metabolic process [GO:0009694]; regulation of response to red or far red light [GO:2000030]; response to mycotoxin [GO:0010046]; response to UV-B [GO:0010224]; response to wounding [GO:0009611],cytoplasm [GO:0005737]; vacuole [GO:0005773]; adenylyltransferase activity [GO:0070566]; ATP binding [GO:0005524]; catalytic activity [GO:0003824]; jasmonate-amino synthetase activity [GO:0080123]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; jasmonic acid metabolic process [GO:0009694]; negative regulation of defense response [GO:0031348]; photomorphogenesis [GO:0009640]; red, far-red light phototransduction [GO:0009585]; regulation of reactive oxygen species metabolic process [GO:2000377]; regulation of stomatal movement [GO:0010119]; response to jasmonic acid [GO:0009753]; response to ozone [GO:0010193]; response to wounding [GO:0009611]; systemic acquired resistance [GO:0009627] TISSUE SPECIFICITY: Expressed in cotyledons and hypocotyls. {ECO:0000269|PubMed:14581632}. locus:2125571;,locus:2039074; AT4G03400,AT2G46370 Indole-3-acetic acid-amido synthetase Jasmonic acid-amido synthetase JAR1 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 5) (OsGH3-5) (Indole-3-acetic acid-amido synthetase GH3.5) (Jasmonate-amino acid synthetase JAR1) (Protein JASMONATE RESISTANT 1) (OsJAR1) Q6I581 GH35_ORYSJ GH3.5 JAR1 Os05g0586200 LOC_Os05g50890 OsJ_19714 OSJNBa0009C07.16 DISRUPTION PHENOTYPE: Open-husk phenotype after pollination and malformed seeds with low fertility (PubMed:18266905, PubMed:23621526, PubMed:24947835). Increased susceptibility to infection by the rice blast fungus Magnaporthe oryzae (PubMed:23832371). {ECO:0000269|PubMed:18266905, ECO:0000269|PubMed:23621526, ECO:0000269|PubMed:23832371, ECO:0000269|PubMed:24947835}. FUNCTION: Catalyzes the synthesis of jasmonate-amino acid conjugates by adenylation. Catalyzes the conjugation of jasmonate (JA) to Ile when expressed in a heterologous system (E.Coli) (PubMed:21619871). Catalyzes in vitro the conjugation of jasmonate (JA) to Ile, Phe, Cys, Leu, Met, Ala, Val and Trp (PubMed:24033451). Involved in the production of JA-Ile in response to infection by the rice blast fungus Magnaporthe oryzae (PubMed:21619871, PubMed:23832371). Required for the accumulation of the flavonoid phytoalexin sakuranetin in response to infection by the rice blast fungus (PubMed:23832371). Involved in herbivory-induced JA-Ile accumulation (PubMed:23621526). Involved in the production of JA-Ile in response to wounding (PubMed:21619871, PubMed:23621526, PubMed:24033451). Required for modulation of light and JA signaling in photomorphogenesis (PubMed:18266905). Required for normal seed development (PubMed:18266905, PubMed:23621526). Required for optimal flower opening and closing and anther dehiscence (PubMed:24947835). May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin (By similarity). {ECO:0000250|UniProtKB:O82333, ECO:0000269|PubMed:18266905, ECO:0000269|PubMed:21619871, ECO:0000269|PubMed:23621526, ECO:0000269|PubMed:23832371, ECO:0000269|PubMed:24033451, ECO:0000269|PubMed:24947835}. ENOG411DQC4 Q94CD8 E134_ARATH Glucan endo-1,3-beta-glucosidase 4 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 4) ((1->3)-beta-glucanase 4) (Beta-1,3-endoglucanase 4) (Beta-1,3-glucanase 4) ARA:AT3G13560-MONOMER; 3.2.1.39 54416 Glucan endo-1,3-beta-glucosidase 4 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 4) ((1->3)-beta-glucanase 4) (Beta-1,3-endoglucanase 4) (Beta-1,3-glucanase 4) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952] locus:2092855; AT3G13560 glucan endo-1-3-beta-glucosidase Os07g0577300 protein (cDNA, clone: J090069K03, full insert sequence) Q0D572 Q0D572_ORYSJ Os07g0577300 Os07g0577300 OSNPB_070577300 ENOG411DQC5 AVT1J,AVT1I Q9LXF8,F4J1Q9,A0A1I9LRP9,A0A1P8BGR6,F4K9Q4 AVT1J_ARATH,AVT1I_ARATH,A0A1I9LRP9_ARATH,A0A1P8BGR6_ARATH,F4K9Q4_ARATH Amino acid transporter AVT1J (AtAvt1J),Amino acid transporter AVT1I (AtAvt1I),Transmembrane amino acid transporter family protein R-ATH-425393;R-ATH-888590; 46473,44644,37159,37003,34399 Amino acid transporter AVT1J (AtAvt1J),Amino acid transporter AVT1I (AtAvt1I),Transmembrane amino acid transporter family protein integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021] locus:2150911;,locus:2087012; AT5G15240,AT3G28960 amino acid transporter OSJNBa0072F16.7 protein (Os04g0460300 protein) (cDNA clone:001-208-F06, full insert sequence),Os06g0228500 protein (Putative amino acid transport protein) (cDNA clone:002-129-B05, full insert sequence),Os04g0460200 protein (Fragment) Q7XUV8,Q67WJ7,A0A0P0WBD0 Q7XUV8_ORYSJ,Q67WJ7_ORYSJ,A0A0P0WBD0_ORYSJ Os04g0460300 Os04g0460300 OSJNBa0072F16.7 OSNPB_040460300,Os06g0228500 Os06g0228500 OsJ_20680 OSNPB_060228500 P0425F05.33 P0525F01.3,Os04g0460200 OSNPB_040460200 ENOG411DQC6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1421) Os05g0561600 protein (cDNA, clone: J065065L20, full insert sequence) Q688Y1 Q688Y1_ORYSJ Os05g0561600 OJ1115_B06.13 OsJ_19537 OSNPB_050561600 ENOG411DQC7 EMF2 Q8L6Y4 EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2 Phenotype resembles the emf1-2 single mutant. Semi-open small petiolelessoval shaped cotyledons and short hypocotyl and leaf primordia. Short hypocotyl; Oval cotyledons with no petiole; Very small, sessile rosette leaves; Very short inflorescence stem; Single flower develops; Only carpel-like floral organs; Severe early flowering; Large SAM-T. Takahashi-2001 FUNCTION: Polycomb group (PcG) protein. Involved in flowering processes by repressing unknown target genes and preventing reproductive development. Participates in polycomb group (PcG) protein complex-mediated (probably in complex with EMF1) silencing of the flower homeotic genes AGAMOUS (AG), PISTILLATA (PI), and APETALA3 (AP3), as well as of some regulatory genes such as ABSCISIC ACID INSENSITIVE3 (ABI3), LONG VEGETATIVE PHASE1 (LOV1), and FLOWERING LOCUS C (FLC) during vegetative development, by mediating trimethylation of histone 3 lysine 27 on the AG chromatin (H3K27me3). PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. {ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648}. 71681 Polycomb group protein EMBRYONIC FLOWER 2 nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; regulation of gene expression by genetic imprinting [GO:0006349]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the developing embryos and endosperm, then decreases when embryos mature and soon after cellularization in the endosperm. After germination, it is expressed in the shoot apical meristems (SAMs), leaf primordia, and young leaves. In the reproductive shoots, it is expressed in both the influorescence and floral meristems. Later, it is expressed in floral organ primordia. In coflorescences, it is expressed in SAMs and lateral organs. In roots, it is expressed in root tips. TISSUE SPECIFICITY: Widely expressed throughout the life cycle with higher levels in proliferating tissues. Expressed in both vegetative and the reproductive shoot meristems. locus:2176242; AT5G51230 Polycomb group protein EMBRYONIC FLOWER Os09g0306800 protein (Fragment),Os04g0162100 protein,Os04g0162100 protein (Fragment) Q0J2S6,Q0JF48,A0A0P0W6S3 Q0J2S6_ORYSJ,Q0JF48_ORYSJ,A0A0P0W6S3_ORYSJ Os09g0306800 OSNPB_090306800,Os04g0162100 Os04g0162100 OSNPB_040162100,Os04g0162100 OSNPB_040162100 ENOG411EHRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0553200 protein A0A0P0V3Y1 A0A0P0V3Y1_ORYSJ Os01g0553200 OSNPB_010553200 ENOG411EHRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UBX domain protein 4 NA NA NA NA NA NA NA ENOG411EHRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-N-acetylglucosamine 2-epimerase NA NA NA NA NA NA NA ENOG411EHRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0113400 protein (Proline-rich protein-like) (cDNA clone:J023024B12, full insert sequence) Q6Z7D0 Q6Z7D0_ORYSJ Os02g0113400 Os02g0113400 OJ1399_H05.22 OsJ_05085 OSNPB_020113400 P0036E06.1 ENOG411EHRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EHRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHRZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hemerythrin HHE cation binding domain NA NA NA NA NA NA NA ENOG411EHR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Kringle domain NA NA NA NA NA NA NA ENOG411E9MS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411E9MR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0628000 protein,Os02g0774800 protein,Os07g0627200 protein Q8GRJ8,Q6Z7K8,A0A0N7KNW4 Q8GRJ8_ORYSJ,Q6Z7K8_ORYSJ,A0A0N7KNW4_ORYSJ P0011H09.101 Os07g0628000 P0506F02.115 OsJ_25214 OSNPB_070628000,Os02g0774800 OJ1448_G06.14 OSNPB_020774800,Os07g0627200 OSNPB_070627200 ENOG411E9MU GIS2 Q9FG05 GIS2_ARATH Zinc finger protein GIS2 (Protein GLABROUS INFLORESCENCE STEMS 2) DISRUPTION PHENOTYPE: Reduced trichome production on cauline leaves, stem branches and sepals. {ECO:0000269|PubMed:17507408}. The flowers and third cauline leaves of gis2 mutants were less sensitive to GA.,Very strong decrease in trichome production on flowers but only a small decrease on branches and cauline leaves which was only noticeable on the third paraclade.,The trichome production is most similar to that of the gis2 mutant on branches and cauline leaves but glabrous flowers are produced . Complete loss of trichomes on floral organs-P. Broun-2007 FUNCTION: Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to ZFP8. {ECO:0000269|PubMed:17507408}. 22466 Zinc finger protein GIS2 (Protein GLABROUS INFLORESCENCE STEMS 2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; gibberellic acid mediated signaling pathway [GO:0009740]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Expressed in inflorescence meristems, floral meristems and stem epidermis. {ECO:0000269|PubMed:17507408}. locus:2144168; AT5G06650 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E9MT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0557700 protein (Fragment) A0A0P0WY62 A0A0P0WY62_ORYSJ Os06g0557700 OSNPB_060557700 ENOG411E9MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAE1/Type III polyketide synthase-like protein NA NA NA NA NA NA NA ENOG411E9MY F3N23.27 Q9SSM0 Q9SSM0_ARATH Highly similar to receptor-like protein kinase (Leucine-rich repeat family protein) (Uncharacterized protein At1g73070/F3N23_27) 65508 Highly similar to receptor-like protein kinase (Leucine-rich repeat family protein) (Uncharacterized protein At1g73070/F3N23_27) kinase activity [GO:0016301] locus:4515102753; AT1G73066 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411E9MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 family protein, expressed (Os10g0171500 protein) (cDNA clone:J033052E03, full insert sequence),Cytochrome P450 family protein, expressed (Os10g0166600 protein),Cytochrome P450 family protein, expressed (Os10g0165300 protein) (Putative Cytochrome P450) (cDNA, clone: J043024C10, full insert sequence),Cytochrome P450 family protein, expressed (Os10g0171500 protein) (Putative cytochrome P450) (cDNA clone:001-015-G01, full insert sequence),Os10g0167200 protein,Os08g0226300 protein,Os02g0500700 protein,Os03g0248200 protein (Fragment),Os10g0164500 protein,Os02g0502300 protein Q33AN0,Q10A27,Q10A28,Q8S5I8,B9G7N8,A0A0N7KPH1,A0A0P0VJ99,A0A0P0VVF7,A0A0P0XRX9,A0A0P0VJA0 Q33AN0_ORYSJ,Q10A27_ORYSJ,Q10A28_ORYSJ,Q8S5I8_ORYSJ,B9G7N8_ORYSJ,A0A0N7KPH1_ORYSJ,A0A0P0VJ99_ORYSJ,A0A0P0VVF7_ORYSJ,A0A0P0XRX9_ORYSJ,A0A0P0VJA0_ORYSJ Os10g0171500 LOC_Os10g09110 OSNPB_100171500,LOC_Os10g08474 Os10g0166600 OSNPB_100166600,OSJNBa0089D15.29 Os10g0165300 LOC_Os10g08319 OsJ_30823 OSNPB_100165300,OSJNBa0061H20.1 Os10g0171500 LOC_Os10g09110 OSNPB_100171500,Os10g0167200 OsJ_30827 OSNPB_100167200,Os08g0226300 OSNPB_080226300,Os02g0500700 OSNPB_020500700,Os03g0248200 OSNPB_030248200,Os10g0164500 OSNPB_100164500,Os02g0502300 OSNPB_020502300 ENOG411E9MZ IQD28,IQD29 F4HUK0,A0A1P8B0B7,Q8GZ87,A0A1P8AWK4,F4IRA9 F4HUK0_ARATH,A0A1P8B0B7_ARATH,Q8GZ87_ARATH,A0A1P8AWK4_ARATH,F4IRA9_ARATH IQ-domain 28,IQ-domain 29,At1g14380 (IQ-domain 28) (Uncharacterized protein At1g14380/F14L17_12) 66102,65267,72849,63139,69761 IQ-domain 28,IQ-domain 29,At1g14380 (IQ-domain 28) (Uncharacterized protein At1g14380/F14L17_12) microtubule associated complex [GO:0005875]; plasma membrane [GO:0005886] locus:2012507;,locus:2058862; AT1G14380,AT2G02790 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411E9MA F7K15_100 Q9LXK9,Q9SKZ4 Q9LXK9_ARATH,Q9SKZ4_ARATH Coiled-coil protein (DUF572) (Uncharacterized protein F7K15_100),Cell cycle control protein-related (Cell cycle control-like protein (DUF572)) (Uncharacterized protein At2g32050) 29357,29247 Coiled-coil protein (DUF572) (Uncharacterized protein F7K15_100),Cell cycle control protein-related (Cell cycle control-like protein (DUF572)) (Uncharacterized protein At2g32050) locus:2084726;,locus:2045447; AT3G43250,AT2G32050 Family of unknown function (DUF572) NA NA NA NA NA NA NA ENOG411E9MC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class I (W and Y) Os01g0867100 protein (Fragment) A0A0P0VAS1 A0A0P0VAS1_ORYSJ Os01g0867100 OSNPB_010867100 ENOG411E9ME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Melibiase NA NA NA NA NA NA NA ENOG411E9MD PP2C6 Q94CL8 P2C48_ARATH Probable protein phosphatase 2C 48 (AtPP2C48) (EC 3.1.3.16) (Protein phosphatase 2C 6) 3.1.3.16 42851 Probable protein phosphatase 2C 48 (AtPP2C48) (EC 3.1.3.16) (Protein phosphatase 2C 6) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2097238; AT3G55050 phosphatase 2C NA NA NA NA NA NA NA ENOG411E9MG PPD O23512 PPD_ARATH Probable pheophorbidase (AtPPD) (EC 3.1.1.82) (FCC methylesterase) (Methylesterase 16) (AtMES16) DISRUPTION PHENOTYPE: Accumulation of fluorescent chlorophyll catabolites (FCC) during senescence. No effect on root length when grown in presence of exogenous MeIAA. {ECO:0000269|PubMed:18467465, ECO:0000269|PubMed:22147518}. FUNCTION: Involved in the chlorophyll breakdown by its action in fluorescent chlorophyll catabolites (FCCs) demethylation. Demethylates the C13(2)-carboxymethyl group present at the isocyclic ring of chlorophyll. Also able to catalyze pheophorbides in vitro. Methylesterase shown to have carboxylesterase activity, methyl indole-3-acetic acid (MeIAA) esterase activity and methyl jasmonate (MeJA) esterase activity in vitro. {ECO:0000269|PubMed:18467465, ECO:0000269|PubMed:22147518}. ARA:AT4G16690-MONOMER; 3.1.1.82 29014 Probable pheophorbidase (AtPPD) (EC 3.1.1.82) (FCC methylesterase) (Methylesterase 16) (AtMES16) cytosol [GO:0005829]; carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl jasmonate esterase activity [GO:0080032]; pheophoridase activity [GO:0035560]; protein homodimerization activity [GO:0042803]; chlorophyll a catabolic process [GO:0033310]; demethylation [GO:0070988]; leaf senescence [GO:0010150] locus:2129041; AT4G16690 NA NA NA NA NA NA NA NA ENOG411E9MF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Regulator of nonsense transcripts NA NA NA NA NA NA NA ENOG411E9MI MAP65-9 Q4PSA3 MA659_ARATH 65-kDa microtubule-associated protein 9 (AtMAP65-9) 63869 65-kDa microtubule-associated protein 9 (AtMAP65-9) cytoplasm [GO:0005737]; nucleus [GO:0005634]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cytokinesis [GO:0000910]; microtubule cytoskeleton organization [GO:0000226] locus:2167978; AT5G62250 microtubule-associated protein 65-9 NA NA NA NA NA NA NA ENOG411E9MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9MK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Programmed cell death protein 2 C-terminal putative domain Os01g0578200 protein (Fragment) A0A0P0V4D7 A0A0P0V4D7_ORYSJ Os01g0578200 OSNPB_010578200 ENOG411E9MJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sterol-sensing domain of SREBP cleavage-activation NA NA NA NA NA NA NA ENOG411E9MM JAL35,JR1 O04309,A0A1I9LQM9 JAL35_ARATH,A0A1I9LQM9_ARATH Jacalin-related lectin 35 (JA-responsive protein 1) (Myrosinase-binding protein-like At3g16470),Mannose-binding lectin superfamily protein 48497,31984 Jacalin-related lectin 35 (JA-responsive protein 1) (Myrosinase-binding protein-like At3g16470),Mannose-binding lectin superfamily protein chloroplast [GO:0009507]; membrane [GO:0016020]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; carbohydrate binding [GO:0030246]; response to cold [GO:0009409]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; vegetative to reproductive phase transition of meristem [GO:0010228],carbohydrate binding [GO:0030246] locus:2088299; AT3G16470 Jacalin NA NA NA NA NA NA NA ENOG411E9MN SAP9 O49663 SAP9_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 9 (AtSAP9) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 18903 Zinc finger A20 and AN1 domain-containing stress-associated protein 9 (AtSAP9) DNA binding [GO:0003677]; zinc ion binding [GO:0008270] locus:2132649; AT4G22820 A20-like zinc finger NA NA NA NA NA NA NA ENOG411E9M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAF domain CBL-interacting protein kinase 28 (EC 2.7.11.1) (OsCIPK28),Os05g0476316 protein A3B529,A0A0P0WNW4 CIPKS_ORYSJ,A0A0P0WNW4_ORYSJ CIPK28 Os05g0476350 LOC_Os05g39870 OsJ_018151,Os05g0476316 OSNPB_050476316 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411E9M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411E9M2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione S-transferase (Os10g0528300 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU4),Os10g0368100 protein (Fragment),Glutathione S-transferase, N-terminal domain containing protein, expressed (Os10g0365200 protein) (Os10g0365300 protein) (Putative glutathione S-transferase) Q9FUE4,Q0IY53,Q8W2T8 Q9FUE4_ORYSJ,Q0IY53_ORYSJ,Q8W2T8_ORYSJ Os10g0528300 OsJ_32231 OSJNBa0034L04.8 OSJNBb0038A07.11 OSNPB_100528300,Os10g0368100 OSNPB_100368100,Os10g0365200 LOC_Os10g22070 Os10g0365300 OSJNBb0089F16.14 OSNPB_100365200 ENOG411E9M5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1929) NA NA NA NA NA NA NA ENOG411E9M7 Q84JS5,F4J5V2 Q84JS5_ARATH,F4J5V2_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At3g58450),Adenine nucleotide alpha hydrolases-like superfamily protein 22371,21707 Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At3g58450),Adenine nucleotide alpha hydrolases-like superfamily protein hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2076381; AT3G58450 Universal stress protein NA NA NA NA NA NA NA ENOG411E9M6 MAA21.1 Q9M1V8,Q93YS2,A0A1I9LNF3 P2C50_ARATH,P2C51_ARATH,A0A1I9LNF3_ARATH Putative protein phosphatase 2C 50 (AtPP2C50) (EC 3.1.3.16),Probable protein phosphatase 2C 51 (AtPP2C51) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 46803,58354,41184 Putative protein phosphatase 2C 50 (AtPP2C50) (EC 3.1.3.16),Probable protein phosphatase 2C 51 (AtPP2C51) (EC 3.1.3.16),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2077319; AT3G63320,AT3G63340 PP2Cc NA NA NA NA NA NA NA ENOG411E9M9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease III domain NA NA NA NA NA NA NA ENOG411E0EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0ET A4FVS5 A4FVS5_ARATH At1g75730 66027 At1g75730 locus:2005654; AT1G75730 NA NA NA NA NA NA NA NA ENOG411E0EU Q9SW33 TL1Y_ARATH Thylakoid lumenal 17.9 kDa protein, chloroplastic 24695 Thylakoid lumenal 17.9 kDa protein, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977] locus:2117268; AT4G24930 thylakoid lumenal 17.9 kDa protein Os01g0102300 protein (p0402A09.21 protein) (p0455C04.15 protein) Q94CX1 Q94CX1_ORYSJ P0402A09.21 P0455C04.15 Os01g0102300 OsJ_00018 OSNPB_010102300 P0672D08.41 ENOG411E0EH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinesterase NA NA NA NA NA NA NA ENOG411E0EJ IPT5 Q94ID2 IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic (AtIPT5) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 5) (Cytokinin synthase 5) DISRUPTION PHENOTYPE: No visible phenotype, due the redundancy with other IPTs. {ECO:0000269|PubMed:17062755}. No visible phenotype.,Decreased levels of isopentenyladenosine riboside (iPR) and isopentenyladenosine monophosphate (iPRMP) compared to wild type.,Increased levels of cis-zeatin riboside (cZR) and cis-zeatin riboside monophosphate (cZRMP) compared to wild type.,Decreases in free-base iP and tZ are moderate compared to those of the riboside and ribotide forms.,External application of trans-zeatin partially rescues the growth of aerial parts of the mutant and reduced its lateral root elongation.,Fewer rosette leaves than wild type indicating a prolonged plastochron.,Flowering time is delayed when grown on vermiculite but not on nutrient agar.,Indistinguishable from wild type in the early stages of development. Phenotypic differences become evident as the plant age.,Levels of iPRMP iPR tZRMP tZR. tZ-7-glucoside tZ-9-glucoside and tZ-O-glucoside are all reduced to less than 20% of those of wild type.,Rduced shoot apical meristem size and thin inflorescence stems.,Reduced cambial activity and reduced secondary growth in both shoots and roots.,Relative to wild type both the number of lateral roots (longer than 1cm) and the total length of the lateral roots are increased.,Short and thin aerial parts.,Some seeds are aborted but surviving ones are larger than those of wild type.,Thin small plants.,Enhanced root growth rate resulting in longer roots.,Mutant root meristems showed an increased number of meristematic cells already at two days after germination (dpg) and accumulated cells also after five dpg vastly exceeding the fixed number of cells of wild-type meristems. FUNCTION: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP. {ECO:0000269|PubMed:11313355, ECO:0000269|PubMed:15998742, ECO:0000269|PubMed:17062755}. MetaCyc:AT5G19040-MONOMER; 2.5.1.112; 2.5.1.112 37395 Adenylate isopentenyltransferase 5, chloroplastic (AtIPT5) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 5) (Cytokinin synthase 5) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ADP dimethylallyltransferase activity [GO:0052623]; AMP dimethylallyltransferase activity [GO:0009824]; ATP binding [GO:0005524]; ATP dimethylallyltransferase activity [GO:0052622]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400] DEVELOPMENTAL STAGE: Expressed in roots soon after germination, but decreases 7 days after germination. {ECO:0000269|PubMed:14675438}. TISSUE SPECIFICITY: Expressed in root primordia, columella root caps, upper part of young inflorescences, and fruit abscission zones. {ECO:0000269|PubMed:14675438, ECO:0000269|PubMed:15356331}. locus:2179629; AT5G19040 adenylate isopentenyltransferase 5 NA NA NA NA NA NA NA ENOG411E0ED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os10g0477200 protein (PPR986-12, putative, expressed) (cDNA clone:J013097P22, full insert sequence) Q7XDD5 Q7XDD5_ORYSJ LOC_Os10g33730 Os10g0477200 OSNPB_100477200 ENOG411E0EE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain BHLH transcription factor (Helix-loop-helix DNA-binding domain containing protein, expressed) (Os03g0671800 protein) (cDNA clone:002-125-A03, full insert sequence) Q10FD6 Q10FD6_ORYSJ LOC_Os03g46860 Os03g0671800 OSNPB_030671800 ENOG411E0EG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os03g0625300 protein A0A0P0W0A9 A0A0P0W0A9_ORYSJ Os03g0625300 OSNPB_030625300 ENOG411E0EB TZP Q9FIX7 Q9FIX7_ARATH Uncharacterized protein At5g43630 (Zinc knuckle (CCHC-type) family protein) 90614 Uncharacterized protein At5g43630 (Zinc knuckle (CCHC-type) family protein) Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II C-terminal domain phosphoserine binding [GO:1990269]; transcription factor activity, RNA polymerase II transcription factor binding [GO:0001076]; zinc ion binding [GO:0008270]; growth [GO:0040007]; histone modification [GO:0016570]; regulation of transcription, DNA-templated [GO:0006355]; transcription elongation from RNA polymerase II promoter [GO:0006368] locus:2158372; AT5G43630 Plus-3 domain Os01g0775100 protein (Fragment) A0A0P0V8S9 A0A0P0V8S9_ORYSJ Os01g0775100 OSNPB_010775100 ENOG411E0EC Q8L5Z2,Q6DSR8,F4IVY7,A0A1P8B1B7,A0A1P8B1C4,A0A1P8B1C8,A0A1P8B1F3,A0A1P8B1C9,A0A1P8B1C1 Q8L5Z2_ARATH,Q6DSR8_ARATH,F4IVY7_ARATH,A0A1P8B1B7_ARATH,A0A1P8B1C4_ARATH,A0A1P8B1C8_ARATH,A0A1P8B1F3_ARATH,A0A1P8B1C9_ARATH,A0A1P8B1C1_ARATH Ternary complex factor MIP1 leucine-zipper protein (Uncharacterized protein At3g47680),Uncharacterized protein 10932,47473,59823,42123,56867,49087,56739,59952,48959 Ternary complex factor MIP1 leucine-zipper protein (Uncharacterized protein At3g47680),Uncharacterized protein locus:1006230189;,locus:2043235; AT3G47675,AT2G39690 Protein of unknown function DUF547 Os01g0147800 protein (Fragment) A0A0P0UY78 A0A0P0UY78_ORYSJ Os01g0147800 OSNPB_010147800 ENOG411ED51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Anticodon binding domain Os04g0398300 protein (Fragment) Q0JDK3,A0A0P0WA31 Q0JDK3_ORYSJ,A0A0P0WA31_ORYSJ Os04g0398300 Os04g0398300 OSNPB_040398300,Os04g0398300 OSNPB_040398300 ENOG411ED52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Coatomer beta C-terminal region Coatomer subunit beta-1 (Beta-coat protein 1) (Beta-COP 1),Coatomer subunit beta-2 (Beta-coat protein 2) (Beta-COP 2),Os11g0174000 protein (Fragment) Q53PC7,Q0JNK5,A0A0P0XZE2,A0A0P0XZK2 COPB1_ORYSJ,COPB2_ORYSJ,A0A0P0XZE2_ORYSJ,A0A0P0XZK2_ORYSJ Os11g0174000 LOC_Os11g07280 OsJ_031814 OsJ_33144 OSJNBa0055G24 OSJNBb0063D09,Os01g0281400 LOC_Os01g17430 OsJ_001282 OSJNBa0036E02.23,Os11g0174000 OSNPB_110174000 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. ENOG411ED55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os08g0487700 protein A0A0P0XHK4 A0A0P0XHK4_ORYSJ Os08g0487700 OSNPB_080487700 ENOG411ED59 Q5XVK1 Q5XVK1_ARATH Nucleolar GTP-binding protein 35519 Nucleolar GTP-binding protein locus:2015041; AT1G22230 NA NA NA NA NA NA NA NA ENOG411ED5P Q9LFB6 Q9LFB6_ARATH Duplicated homeodomain-like superfamily protein (MYB transcription factor) (Uncharacterized protein F7J8_180) 29845 Duplicated homeodomain-like superfamily protein (MYB transcription factor) (Uncharacterized protein F7J8_180) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2150149; AT5G01200 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411ED5R Q9LVG8 FB295_ARATH Putative F-box protein At5g60060 42104 Putative F-box protein At5g60060 locus:2164140; AT5G60060 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411ED5S AGD1 Q9FIT8 AGD1_ARATH ADP-ribosylation factor GTPase-activating protein AGD1 (ARF GAP AGD1) (Protein ARF-GAP DOMAIN 1) (AtAGD1) DISRUPTION PHENOTYPE: Wavy root hair phenotype. {ECO:0000269|PubMed:18539780}. FUNCTION: Probable GTPase-activating protein (By similarity). Regulator of membrane trafficking. Required for maintaining a straight growth of root hairs. {ECO:0000250, ECO:0000269|PubMed:18539780}. 93605 ADP-ribosylation factor GTPase-activating protein AGD1 (ARF GAP AGD1) (Protein ARF-GAP DOMAIN 1) (AtAGD1) endocytic vesicle [GO:0030139]; endosome [GO:0005768]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; cytoskeleton organization [GO:0007010]; transport [GO:0006810] TISSUE SPECIFICITY: Expressed in roots, but not in hypocotyls or cotyledons. Low levels detected in leaf and shoot apical meristems and in siliques. {ECO:0000269|PubMed:16698946}. locus:2156176; AT5G61980 ARF-GAP domain 1 NA NA NA NA NA NA NA ENOG411ED5T Q0WR30,Q8LF90,Q9LME7 Q0WR30_ARATH,Q8LF90_ARATH,Q9LME7_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g78260),At1g78260 (RNA recognition motif-containing protein SEB-4) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein (T16E15.6 protein) 30335,31468,31981 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g78260),At1g78260 (RNA recognition motif-containing protein SEB-4) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein (T16E15.6 protein) integral component of membrane [GO:0016021]; RNA binding [GO:0003723],mRNA binding [GO:0003729],RNA binding [GO:0003723] locus:2032120;,locus:2196521; AT1G78260,AT1G22330 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411ED5U MTI20.9 Q9FJN0 Q9FJN0_ARATH AT5g57840/MTI20_9 (HXXXD-type acyl-transferase family protein) (N-hydroxycinnamoyl/benzoyltransferase) ARA:AT5G57840-MONOMER; 49950 AT5g57840/MTI20_9 (HXXXD-type acyl-transferase family protein) (N-hydroxycinnamoyl/benzoyltransferase) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2174423; AT5G57840 transferase family NA NA NA NA NA NA NA ENOG411ED5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os01g0553700 protein,Os02g0517800 protein,Os04g0133100 protein,Os01g0553750 protein,Os04g0133000 protein,Os01g0553800 protein A0A0P0V492,A0A0P0VJL7,A0A0P0W727,A0A0P0V453,A0A0P0W6W2,A0A0P0V401 A0A0P0V492_ORYSJ,A0A0P0VJL7_ORYSJ,A0A0P0W727_ORYSJ,A0A0P0V453_ORYSJ,A0A0P0W6W2_ORYSJ,A0A0P0V401_ORYSJ Os01g0553700 OSNPB_010553700,Os02g0517800 OSNPB_020517800,Os04g0133100 OSNPB_040133100,Os01g0553750 OSNPB_010553750,Os04g0133000 OSNPB_040133000,Os01g0553800 OSNPB_010553800 ENOG411ED5X SFH3,SFH2,SEC14 Q93ZE9,F4JVA9,F4JVA8,F4IHJ2 SFH3_ARATH,SFH2_ARATH,F4JVA8_ARATH,F4IHJ2_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 (Protein SEC FOURTEEN HOMOLOGS 3) (AtSFH3),Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 (Protein SEC FOURTEEN HOMOLOGS 2) (AtSFH2),Sec14p-like phosphatidylinositol transfer family protein,SEC14-like 3 FUNCTION: Required for transport of secretory proteins from the Golgi complex (By similarity). Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro. {ECO:0000250, ECO:0000269|PubMed:16697077}.,FUNCTION: Required for transport of secretory proteins from the Golgi complex (By similarity). Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro. {ECO:0000250, ECO:0000269|PubMed:15728190}. 62832,63860,63731,62197 Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 (Protein SEC FOURTEEN HOMOLOGS 3) (AtSFH3),Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 (Protein SEC FOURTEEN HOMOLOGS 2) (AtSFH2),Sec14p-like phosphatidylinositol transfer family protein,SEC14-like 3 Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; flower development [GO:0009908]; protein transport [GO:0015031],Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; transporter activity [GO:0005215]; phosphatidylcholine biosynthetic process [GO:0006656]; protein transport [GO:0015031],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; transporter activity [GO:0005215],intracellular [GO:0005622]; transporter activity [GO:0005215] DEVELOPMENTAL STAGE: First detected in the stigma papillae of the flowers at stage 11, and then in the pollen grains before and after fertilization. {ECO:0000269|PubMed:16697077}. TISSUE SPECIFICITY: Predominantly expressed in flowers but also slightly detected in stems and immature siliques. {ECO:0000269|PubMed:16697077}. locus:2049319;,locus:2136303; AT2G21540,AT4G39180 CRAL/TRIO N-terminal domain NA NA NA NA NA NA NA ENOG411ED5Y LRX7 Q4PSE6 LRX7_ARATH Leucine-rich repeat extensin-like protein 7 (AtLRX7) (LRR/EXTENSIN7) (Cell wall hydroxyproline-rich glycoprotein) FUNCTION: Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. {ECO:0000250}. 48088 Leucine-rich repeat extensin-like protein 7 (AtLRX7) (LRR/EXTENSIN7) (Cell wall hydroxyproline-rich glycoprotein) cell wall [GO:0005618]; extracellular region [GO:0005576]; structural constituent of cell wall [GO:0005199]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed in flowers and pollen. {ECO:0000269|PubMed:12644681}. locus:2179449; AT5G25550 Leucine-rich repeat NA NA NA NA NA NA NA ENOG411ED5Z GA2OX7 Q9C6I4 G2OX7_ARATH Gibberellin 2-beta-dioxygenase 7 (EC 1.14.11.13) (GA 2-oxidase 7) (Gibberellin 2-beta-hydroxylase 7) (Gibberellin 2-oxidase 7) In long day conditions no significant difference in flowering behaviour between mutant and wild-type.,In short day conditions mutant formed fewer rosette leaves before bolting.,In short day conditions mutant formed a greater number of cauline leaves.,Longer hypocotyl compared to wild-type when grown in medium- and low-light.,Dwarf (growth under long-day photoperiod).,Longer roots when plants are grown under salt stress (50-100nM NaCl). FUNCTION: Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs. Hydroxylates the C20-GA GA12 and GA53, but is not active on C19-GAs, like GA1, GA4, GA9 and GA20. {ECO:0000269|PubMed:12509528}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT1G50960-MONOMER;MetaCyc:AT1G50960-MONOMER; 1.14.11.13 38289 Gibberellin 2-beta-dioxygenase 7 (EC 1.14.11.13) (GA 2-oxidase 7) (Gibberellin 2-beta-hydroxylase 7) (Gibberellin 2-oxidase 7) C-20 gibberellin 2-beta-dioxygenase activity [GO:0052635]; metal ion binding [GO:0046872]; gibberellin biosynthetic process [GO:0009686]; gibberellin metabolic process [GO:0009685]; response to salt stress [GO:0009651] locus:2036386; AT1G50960 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411ED5B O22705,Q8GX21,Q94AP2,A0A1P8ATJ3,A0A1P8ATL4,A8MRN6,Q3EDE9 O22705_ARATH,Q8GX21_ARATH,Q94AP2_ARATH,A0A1P8ATJ3_ARATH,A0A1P8ATL4_ARATH,A8MRN6_ARATH,Q3EDE9_ARATH F8A5.19 protein,At1g10820 (Uncharacterized protein At1g10820/T16B5_4),Uncharacterized protein At1g60670,Uncharacterized protein 27652,25870,28285,28187,24012,22314,28462 F8A5.19 protein,At1g10820 (Uncharacterized protein At1g10820/T16B5_4),Uncharacterized protein At1g60670,Uncharacterized protein DNA binding [GO:0003677] locus:2036556;,locus:2196480; AT1G10820,AT1G60670 Protein of unknown function (DUF3755) NA NA NA NA NA NA NA ENOG411ED5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamine synthetase catalytic domain NA NA NA NA NA NA NA ENOG411ED5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Expressed protein (Os12g0109600 protein),Os11g0113500 protein,Os12g0113100 protein Q2QYQ7,A0A0P0XXZ0,A0A0P0Y636 Q2QYQ7_ORYSJ,A0A0P0XXZ0_ORYSJ,A0A0P0Y636_ORYSJ LOC_Os12g01880 Os12g0109600 OSNPB_120109600,Os11g0113500 OSNPB_110113500,Os12g0113100 OSNPB_120113100 ENOG411ED5I IAA28 Q9XFM0 IAA28_ARATH Auxin-responsive protein IAA28 (Indoleacetic acid-induced protein 28) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 20206 Auxin-responsive protein IAA28 (Indoleacetic acid-induced protein 28) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; lateral root morphogenesis [GO:0010102]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: In roots and inflorescence stems. locus:2180557; AT5G25890 indole-3-acetic acid inducible 28 NA NA NA NA NA NA NA ENOG411ED5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II Os05g0319200 protein (Putative 1-aminocyclopropane-1-carboxylate synthase),Os01g0192900 protein,Os05g0196600 protein Q5W6F9,A0A0P0UZP7,A0A0P0WIY3 Q5W6F9_ORYSJ,A0A0P0UZP7_ORYSJ,A0A0P0WIY3_ORYSJ Os05g0319200 OSJNBb0006B22.3 OSJNBb0059K16.10 OSNPB_050319200,Os01g0192900 OSNPB_010192900,Os05g0196600 OSNPB_050196600 ENOG411ED5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVS6 Q9STK5 PP269_ARATH Pentatricopeptide repeat-containing protein At3g48250, chloroplastic Mutation of BIR6 affects splicing of intron 1 of mitochondrial nad7 transcript leading to strongly reduced accumulation of fully processed nad7 transcript. This affects assembly of Complex I and results in moderate growth retardation. Dwarf; Resistant to buthionine sulfoximine (inhibitor of glutathione biosynthesis), mannitol, and salt stress-S. Kopriva-2010 71033 Pentatricopeptide repeat-containing protein At3g48250, chloroplastic chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451]; RNA splicing [GO:0008380] locus:2101190; AT3G48250 Pentatricopeptide repeat-containing protein Os01g0970900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:001-113-D07, full insert sequence) (cDNA clone:J033059E20, full insert sequence) Q94DI0 Q94DI0_ORYSJ Os01g0970900 Os01g0970900 OsJ_04919 OSNPB_010970900 P0518C01.7 ENOG411E1G8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0506100 protein,Os04g0431700 protein Q6Z3S6,A0A0P0WAN7 Q6Z3S6_ORYSJ,A0A0P0WAN7_ORYSJ Os08g0506100 OJ1134_H03.38 OSJNBa0025J22.28 OSNPB_080506100,Os04g0431700 OSNPB_040431700 ENOG411E1G2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione S-transferase GSTF15 (Glutathione S-transferase, C-terminal domain containing protein, expressed) (Os03g0135100 protein) (Putative glutathione S-transferase) (cDNA clone:006-211-D02, full insert sequence) Q8H8D8 Q8H8D8_ORYSJ LOC_Os03g04240 Os03g0135100 OJ1006F06.7 OsJ_09311 OSNPB_030135100 ENOG411EBS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dienelactone hydrolase family 'putative endo-1,31,4-beta-D-glucanase (Os05g0400100 protein) (Putative dienelactone hydrolase) (cDNA clone:002-129-H09, full insert sequence),Os05g0400200 protein Q6ATZ0,A0A0P0WLZ6 Q6ATZ0_ORYSJ,A0A0P0WLZ6_ORYSJ Os05g0400100 OSJNBa0035J16.3 OSNPB_050400100 P0605G01.18,Os05g0400200 OSNPB_050400200 ENOG411EBS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411EBS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EBS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA NA NA NA NA NA NA NA ENOG411EHAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1GV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Protein BIG GRAIN 1 Q10R09 BG1_ORYSJ BG1 Os03g0175800 LOC_Os03g07920 OsJ_09620 DISRUPTION PHENOTYPE: Decreased sensitivity to auxin and N-1-naphthylphthalamic acid, an auxin transport inhibitor. Reduced plant height and decreased panicle length, and grain size and weight. Altered auxin transport. {ECO:0000269|PubMed:26283354}. FUNCTION: Involved in auxin transport. Positive regulator of the auxin signaling pathway involved in gravitropism, plant growth and grain development. {ECO:0000269|PubMed:26283354}. MISCELLANEOUS: The over-expressing mutants Bg1-D and BG1-OE exhibit increased grain size with both bigger length and width, and associated with longer epidermis cells of both palea and lemma in spikelet hull as well as increases of both number and area of the parenchyma cells in the hull. Some genes associated with cell cycle and cell expansion are up-regulated in the panicles. Enhanced growth of other tissues at both the vegetative and reproductive stages are also observed. Increased sensitivity to auxin (IAA) in term of root elongation/inhibition, as well as altered IAA distribution and transport. {ECO:0000269|PubMed:26283354}. ENOG411EDTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E1GK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os08g0285600 protein A0A0P0XDV3 A0A0P0XDV3_ORYSJ Os08g0285600 OSNPB_080285600 ENOG411EDTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1GJ Q9LV36 Q9LV36_ARATH GPI-anchored protein (Uncharacterized protein At3g18050) (Uncharacterized protein At3g18050; MRC8.3) 36538 GPI-anchored protein (Uncharacterized protein At3g18050) (Uncharacterized protein At3g18050; MRC8.3) anchored component of membrane [GO:0031225] locus:2092732; AT3G18050 NA NA NA NA NA NA NA NA ENOG411E1GI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aluminium activated malate transporter Os06g0331900 protein (Putative aluminum-activated malate transporter) Q69WI1 Q69WI1_ORYSJ Os06g0331900 Os06g0331900 OSNPB_060331900 P0531C01.9 P0577H07.17 ENOG411EDTX MAC12.10 A0A1P8BGS3,F4K5D9 A0A1P8BGS3_ARATH,F4K5D9_ARATH Aminopeptidase 76215,93390 Aminopeptidase aminopeptidase activity [GO:0004177],integral component of membrane [GO:0016021]; aminopeptidase activity [GO:0004177] locus:2159108; AT5G13940 Protein of unknown function (DUF3754) NA NA NA NA NA NA NA ENOG411EDTF XTH13,XTH12 Q9FKL8,Q9FKL9 XTH13_ARATH,XTH12_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 13 (At-XTH13) (XTH-13) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 12 (At-XTH12) (XTH-12) (EC 2.4.1.207) FUNCTION: May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. ARA:AT5G57540-MONOMER;,ARA:AT5G57530-MONOMER; 2.4.1.207; 2.4.1.207 32175,32190 Putative xyloglucan endotransglucosylase/hydrolase protein 13 (At-XTH13) (XTH-13) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 12 (At-XTH12) (XTH-12) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Root specific. {ECO:0000269|PubMed:11673616}. locus:2174582;,locus:2174572; AT5G57540,AT5G57530 xyloglucan xyloglucosyl transferase NA NA NA NA NA NA NA ENOG411EDTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411EBSS Q3E8G9 Q3E8G9_ARATH Mitochondrial transcription termination factor-related / mTERF-like protein 48241 Mitochondrial transcription termination factor-related / mTERF-like protein chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:504954990; AT5G45113 mTERF NA NA NA NA NA NA NA ENOG411EDTM F17J6.1,MQB2.15 Q9LUP2,Q9C6Q5,F4K7U0 FB155_ARATH,Q9C6Q5_ARATH,F4K7U0_ARATH Putative F-box protein At3g17560,F-box associated ubiquitination effector family protein (Uncharacterized protein F17J6.1),F-box associated ubiquitination effector family protein 47674,13623,23976 Putative F-box protein At3g17560,F-box associated ubiquitination effector family protein (Uncharacterized protein F17J6.1),F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2090477;,locus:2008016;,locus:2170718; AT3G17560,AT1G50470,AT5G62830 f-box family NA NA NA NA NA NA NA ENOG411EDTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_10 Os10g0351600 protein (Fragment) A0A0P0XT44 A0A0P0XT44_ORYSJ Os10g0351600 OSNPB_100351600 ENOG411EDTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLDc NA NA NA NA NA NA NA ENOG411EBSK F24B22.110 Q9M389,A0A1I9LLF7 Q9M389_ARATH,A0A1I9LLF7_ARATH Embryonic abundant protein-like (Embryonic abundant protein-like protein) (Putative embryonic abundant protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 36645,29360 Embryonic abundant protein-like (Embryonic abundant protein-like protein) (Putative embryonic abundant protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytosol [GO:0005829]; nucleus [GO:0005634]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259]; pollen exine formation [GO:0010584]; pollen germination [GO:0009846],methyltransferase activity [GO:0008168] locus:2080245; AT3G54150 Methyltransferase domain NA NA NA NA NA NA NA ENOG411EBSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1GD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF641) Os01g0203800 protein (cDNA clone:J023064J20, full insert sequence) (cDNA clone:J033047A10, full insert sequence) Q9LWP7 Q9LWP7_ORYSJ Os01g0203800 Os01g0203800 OSNPB_010203800 P0451C06.8 ENOG411EBSA SOT7 Q9FZ91 SOT7_ARATH Cytosolic sulfotransferase 7 (AtSOT7) (EC 2.8.2.-) FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. {ECO:0000250}. ARA:AT1G28170-MONOMER; R-ATH-156584; 2.8.2.- 37808 Cytosolic sulfotransferase 7 (AtSOT7) (EC 2.8.2.-) cytoplasm [GO:0005737]; sulfotransferase activity [GO:0008146] locus:2032215; AT1G28170 Sulfotransferase domain NA NA NA NA NA NA NA ENOG411EBSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain NA NA NA NA NA NA NA ENOG411EBSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EDT7 F4JEV5 F4JEV5_ARATH Pollen Ole e 1 allergen and extensin family protein 19279 Pollen Ole e 1 allergen and extensin family protein locus:2092055; AT3G26960 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411EDT9 Q9LNN3 LECT4_ARATH Lectin-like protein At1g53080 31832 Lectin-like protein At1g53080 apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; carbohydrate binding [GO:0030246] locus:2037010; AT1G53080 Legume lectin domain NA NA NA NA NA NA NA ENOG411DZV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os01g0153800 protein (Fragment) A0A0P0UYF3 A0A0P0UYF3_ORYSJ Os01g0153800 OSNPB_010153800 ENOG411EKGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EKGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKGY ASIL2 Q9LJG8 ASIL2_ARATH Trihelix transcription factor ASIL2 (6B-interacting protein 1-like 2) (Trihelix DNA-binding protein ASIL2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21330492}. FUNCTION: Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. 48314 Trihelix transcription factor ASIL2 (6B-interacting protein 1-like 2) (Trihelix DNA-binding protein ASIL2) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; seed maturation [GO:0010431]; transcription, DNA-templated [GO:0006351] locus:2087472; AT3G14180 NA NA NA NA NA NA NA NA ENOG411EKGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0027P08.13 protein (Os04g0445600 protein) Q7XRK9 Q7XRK9_ORYSJ Os04g0445600 Os04g0445600 OSJNBa0027P08.13 OSNPB_040445600 ENOG411EKGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyt-b5 NA NA NA NA NA NA NA ENOG411EKGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Centlein centrosomal protein OSJNBa0095E20.6 protein (Os04g0136900 protein) Q7XRN0 Q7XRN0_ORYSJ Os04g0136900 Os04g0136900 OSJNBa0095E20.6 OSNPB_040136900 ENOG411EKGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phytosulfokine receptor 2-like NA NA NA NA NA NA NA ENOG411EKGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKGH TRFL3 Q8RXU8,F4I7K3,A0A1P8ASC6 Q8RXU8_ARATH,F4I7K3_ARATH,A0A1P8ASC6_ARATH MYB transcription factor (TRF-like 3) (Uncharacterized protein At1g17460),TRF-like 3 66954,69193,64529 MYB transcription factor (TRF-like 3) (Uncharacterized protein At1g17460),TRF-like 3 DNA binding [GO:0003677],cytosolic ribosome [GO:0022626]; nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; telomeric loop formation [GO:0031627] locus:2018815; AT1G17460 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EKGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os11g0117900 protein,Hydrolase, alpha/beta fold family protein, expressed (Os12g0117100 protein) (cDNA clone:006-210-B10, full insert sequence) B9G928,Q2QYJ1 B9G928_ORYSJ,Q2QYJ1_ORYSJ Os11g0117900 OsJ_32736 OSNPB_110117900,Os12g0117100 LOC_Os12g02500 Os12g0117100 OsJ_35010 OSNPB_120117100 ENOG411EKGJ MES17 Q9SG92 MES17_ARATH Methylesterase 17 (AtMES17) (EC 3.1.1.-) (Methyl indole-3-acetic acid esterase) DISRUPTION PHENOTYPE: Longer hypocotyls when grown in presence of exogenous MeIAA. {ECO:0000269|PubMed:18467465}. mes17-1 mutant roots are less responsive to MeIAA than wild type roots but they show a normal root growth inhibition in response to IAA and also grow like wild type roots under normal conditions. Light-grown mes17-1 mutants have hypocotyls that are 32% longer than wild-type hypocotyls when they are on soil and 29% longer when they are on half strength MS media. In the dark mes17-1 hypocotyls are the same length as wild type hypocotyls when both are grown on half-strength MS media. In other aspects of plant growth mes17-1 mutants appear phenotypically normal but they do have higher levels of DR5:GUS expression suggesting that they might have higher levels of auxin auxin flow or auxin signaling. mes17-1 mutants also appear to have a reduced ability to hydrolyze [14C]MeIAA compared to wild type plants in feeding assays.,mes17-2 mutant roots are less responsive to MeIAA than wild type roots but they show a normal root growth inhibition in response to IAA and also grow like wild type roots under normal conditions. Light-grown mes17-2 mutants have hypocotyls that are 29% longer when they are on half strength MS media. In the dark mes17-2 hypocotyls are the same length as wild type hypocotyls when both are grown on half-strength MS media. In other aspects of plant growth mes17-2 mutants appear phenotypically normal. Long hypocotyl; Long roots in response to MeIAA-E. Pichersky-2008 FUNCTION: Methylesterase that efficiently and specifically hydrolyzes methyl indole-3-acetic acid (MeIAA) to IAA (auxin). MeIAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. {ECO:0000269|PubMed:18467465}. ARA:AT3G10870-MONOMER; 3.1.1.1; 3.1.1.- 30868 Methylesterase 17 (AtMES17) (EC 3.1.1.-) (Methyl indole-3-acetic acid esterase) hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; indoleacetic acid conjugate metabolic process [GO:0033473]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem. locus:2103202; AT3G10870 methyl esterase 17 NA NA NA NA NA NA NA ENOG411EKGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EKG0 Q9SIK1 GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) FUNCTION: This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP (By similarity). {ECO:0000250}. PATHWAY: Glycan biosynthesis; starch biosynthesis. 2.7.7.27; 2.7.7.27 58205 Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) chloroplast [GO:0009507]; glucose-1-phosphate adenylyltransferase complex [GO:0010170]; ATP binding [GO:0005524]; glucose-1-phosphate adenylyltransferase activity [GO:0008878]; glycogen biosynthetic process [GO:0005978]; starch biosynthetic process [GO:0019252] locus:2049364; AT2G21590 This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor ADP- glucose from Glc-1-P and ATP (By similarity) NA NA NA NA NA NA NA ENOG411EKG3 APL3 P55231 GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) FUNCTION: This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. PATHWAY: Glycan biosynthesis; starch biosynthesis. 2.7.7.27; 2.7.7.27 58029 Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) chloroplast [GO:0009507]; ATP binding [GO:0005524]; glucose-1-phosphate adenylyltransferase activity [GO:0008878]; glycogen biosynthetic process [GO:0005978]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Probably are expressed in roots, flowers and/or seeds. locus:2136358; AT4G39210 This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor ADP- glucose from Glc-1-P and ATP NA NA NA NA NA NA NA ENOG411EKG2 APL2,ADG2 P55230,P55229 GLGL2_ARATH,GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase),Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) Low starch levels in leaves-J. Chen-1997 FUNCTION: This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT5G19220-MONOMER;MetaCyc:MONOMER-1823; 2.7.7.27; 2.7.7.27 57470,57674 Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase),Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) chloroplast [GO:0009507]; ATP binding [GO:0005524]; glucose-1-phosphate adenylyltransferase activity [GO:0008878]; glycogen biosynthetic process [GO:0005978]; starch biosynthetic process [GO:0019252],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; glucose-1-phosphate adenylyltransferase activity [GO:0008878]; glycogen biosynthetic process [GO:0005978]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Probably are expressed in roots, flowers and/or seeds.,TISSUE SPECIFICITY: Leaves. locus:2199241;,locus:2182132; AT1G27680,AT5G19220 This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor ADP- glucose from Glc-1-P and ATP (By similarity) Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic (OsAGPL1) (OsAPL1) (EC 2.7.7.27) (ADP-glucose pyrophosphorylase AGPL1) (ADP-glucose synthase AGPL1),Glucose-1-phosphate adenylyltransferase large subunit 4, chloroplastic/amyloplastic (OsAGPL4) (OsAPL4) (EC 2.7.7.27) (ADP-glucose pyrophosphorylase AGPL4) (ADP-glucose synthase AGPL4),Os03g0735000 protein (Fragment) Q6AVT2,Q0D7I3,A0A0P0W2L6 GLGL1_ORYSJ,GLGL4_ORYSJ,A0A0P0W2L6_ORYSJ AGPL1 APL1 Os03g0735000 LOC_Os03g52460 OSJNBa0027J18.8,AGPL4 APL4 Os07g0243200 LOC_Os07g13980 OJ1341_A08.119 P0418E08.141,Os03g0735000 OSNPB_030735000 FUNCTION: Involved in synthesis of starch. Catalyzes the synthesis of ADP-glucose, a molecule that serves as an activated glycosyl donor for alpha-1,4-glucan synthesis. Essential for starch synthesis in leaf chloroplasts and endosperm amyloplasts. {ECO:0000269|PubMed:17406793}.,FUNCTION: Involved in synthesis of starch. Catalyzes the synthesis of ADP-glucose, a molecule that serves as an activated glycosyl donor for alpha-1,4-glucan synthesis. Essential for starch synthesis in leaf chloroplasts. {ECO:0000305|PubMed:17406793}. ENOG411EKG5 ICS2,ICS1 Q9M9V6,Q9S7H8,A0A1P8APX0,F4IDX8 ICS2_ARATH,ICS1_ARATH,A0A1P8APX0_ARATH,F4IDX8_ARATH Isochorismate synthase 2, chloroplastic (AtIcs2) (EC 5.4.4.2) (Isochorismate mutase 2) (menF-like protein 2),Isochorismate synthase 1, chloroplastic (AtIcs1) (IcsI) (EC 5.4.4.2) (Enhanced disease susceptibility 16) (Eds16) (Isochorismate mutase 1) (Salicylic acid induction deficient 2) (Sid2) (menF-like protein 1),Isochorismate synthase 2 DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with ICS1. Mutants are not impaired in salicylic acid accumulation upon induction. Ics1 and ics2 double mutant is seedling lethal due to photosynthetic lesions induced by the lack of phylloquinone. {ECO:0000269|PubMed:16617180, ECO:0000269|PubMed:18451262}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with ICS2. Nevertheless salicylic acid accumulation upon induction is severely impaired. Ics1 and ics2 double mutant is seedling lethal due to photosynthetic lesions induced by the lack of phylloquinone. {ECO:0000269|PubMed:16617180, ECO:0000269|PubMed:18451262}. Phenotype not described.,Defective in phylloquinone biosynthesis.,Contains about 18% of wild-type phylloquinone content but 50-70% of wild-type PSI activity.,Following Pythium irregulare infection the increase in JA levels was comparable in wild-type and sid2-1 plants.,Reduced SA accumulation in response to pathogens reduced pathogenesis-related gene expression and enhanced susceptibility to pathogens.,Significantly increased susceptibility to the oomycete Pythium irregulare.,In control experiments multiplication of the bacterial cor mutant (in Col and Ler) at the surface of leaves was greatly reduced compared whereas it multiplied efficiently when infiltrated directly into the apoplast (and caused typical disease symptoms incluring necrosis and chlorosis). In the surface-inoculated mutant the bacterial cor mutant multiplied efficiently.,Stomatal closure in response to bacteria and lipopolysaccharide (LPS) is compromised in the mutant. Susceptible to pathogens-F. Ausubel-2001 FUNCTION: Involved in the synthesis of salicylic acid (SA) required for both local and systemic acquired resistance (LAR and SAR) while SA synthesized through the phenylalanine ammonium lyase (PAL) pathway seems to potentiate plant cell death. Also involved in phylloquinone (vitamin K1) synthesis. Has no isochorismate pyruvate lyase (IPL) activity. {ECO:0000269|PubMed:16617180, ECO:0000269|PubMed:18451262}.,FUNCTION: Involved in the synthesis of salicylic acid (SA) required for both local and systemic acquired resistance (LAR and SAR) while SA synthesized through the phenylalanine ammonium lyase (PAL) pathway seems to potentiate plant cell death. Also involved in phylloquinone (vitamin K1) synthesis. Has no isochorismate pyruvate lyase (IPL) activity. {ECO:0000269|PubMed:10449575, ECO:0000269|PubMed:16617180, ECO:0000269|PubMed:17190832, ECO:0000269|PubMed:18451262}. PATHWAY: Siderophore biosynthesis; salicylate biosynthesis. MetaCyc:AT1G74710-MONOMER; 5.4.4.2; 5.4.4.2 62386,62575,59555,56608 Isochorismate synthase 2, chloroplastic (AtIcs2) (EC 5.4.4.2) (Isochorismate mutase 2) (menF-like protein 2),Isochorismate synthase 1, chloroplastic (AtIcs1) (IcsI) (EC 5.4.4.2) (Enhanced disease susceptibility 16) (Eds16) (Isochorismate mutase 1) (Salicylic acid induction deficient 2) (Sid2) (menF-like protein 1),Isochorismate synthase 2 chloroplast [GO:0009507]; plastid [GO:0009536]; 4-amino-4-deoxychorismate synthase activity [GO:0046820]; isochorismate synthase activity [GO:0008909]; defense response [GO:0006952]; phylloquinone biosynthetic process [GO:0042372]; salicylic acid biosynthetic process [GO:0009697]; tetrahydrofolate biosynthetic process [GO:0046654],chloroplast [GO:0009507]; plastid [GO:0009536]; 4-amino-4-deoxychorismate synthase activity [GO:0046820]; isochorismate synthase activity [GO:0008909]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; negative regulation of defense response [GO:0031348]; phylloquinone biosynthetic process [GO:0042372]; response to bacterium [GO:0009617]; response to cold [GO:0009409]; salicylic acid biosynthetic process [GO:0009697]; stomatal movement [GO:0010118]; systemic acquired resistance [GO:0009627]; tetrahydrofolate biosynthetic process [GO:0046654],biosynthetic process [GO:0009058],isochorismate synthase activity [GO:0008909]; biosynthetic process [GO:0009058] TISSUE SPECIFICITY: Leaves. locus:2034954;,locus:2019245; AT1G18870,AT1G74710 isochorismate synthase NA NA NA NA NA NA NA ENOG411EKG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EKG8 ATJ16 Q8VXV4 DNJ16_ARATH Chaperone protein dnaJ 16 (AtDjB16) (AtJ16) (Protein ARG1-LIKE 1) (AtARL1) FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to not be involved in gravitropism signaling pathway. {ECO:0000250, ECO:0000269|PubMed:12970478}. 49305 Chaperone protein dnaJ 16 (AtDjB16) (AtJ16) (Protein ARG1-LIKE 1) (AtARL1) membrane [GO:0016020]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Expressed constitutively in seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:12970478}. locus:2032437; AT1G24120 chaperone protein DNAJ Os02g0741100 protein (Putative Altered Response to Gravity) (cDNA clone:J013164G17, full insert sequence) Q6Z7S3 Q6Z7S3_ORYSJ Os02g0741100 Os02g0741100 OsJ_08329 OSNPB_020741100 P0516G10.24 P0585G03.2 ENOG411E0GJ Q94C27 FB84_ARATH F-box protein At1g70590 39134 F-box protein At1g70590 locus:2026774; AT1G70590 F-box protein OSJNBa0022H21.17 protein (Os04g0476000 protein) Q7XKU0 Q7XKU0_ORYSJ Os04g0476000 Os04g0476000 OSJNBa0022H21.17 OSNPB_040476000 ENOG411DSA3 F4JXW9 F4JXW9_ARATH Catalytics 108868 Catalytics endoplasmic reticulum [GO:0005783]; ER membrane protein complex [GO:0072546]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; protein folding in endoplasmic reticulum [GO:0034975] locus:2144266; AT5G11560 Protein of unknown function (DUF1620) Os05g0230600 protein (cDNA clone:J023048G06, full insert sequence),Os05g0230600 protein (Fragment) Q75GB3,A0A0P0WJT6 Q75GB3_ORYSJ,A0A0P0WJT6_ORYSJ Os05g0230600 B1402B06.17 OSJNBa0042F15.2 OSNPB_050230600,Os05g0230600 OSNPB_050230600 ENOG411DSAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0784200 protein (Putative receptor-like kinase),Os01g0784500 protein (Fragment) Q8LQN6,A0A0P0V932 Q8LQN6_ORYSJ,A0A0P0V932_ORYSJ Os01g0784200 Os01g0784200 B1070A12.4 OSNPB_010784200,Os01g0784500 OSNPB_010784500 ENOG411DSAD RHF1A Q4TU14 RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A (EC 2.3.2.27) (RING-H2 finger F1a) (RING-H2 zinc finger protein RHF1a) (RING-type E3 ubiquitin transferase RHF1A) The rhf1a mutant does not have any visibly aberrant phenotypes but an rhf1a rhf2a double mutant reveals the role of these two proteins in gametogenesis and proteolysis.,This double mutant has shorter siliques than WT plants and lower fertility. Approximately 60% of ovules abort the megagametophytic development process at the FG1 stage. Often one of the megaspores that is supposed to degenerate remains visible in the rhf1a rhf2a megagametophyte for a prolonged period of time. Some of the mutants arrested at the two nucleate (F2) stage whereas about 30% developed normal female gametophytes that could be successfully fertilized to produce viable seed. The pollen of the double mutant is largely defective with about 50-70% nonviability compared to ~0.5% nonviability for wild type pollen. The pollen for rhf1a rhf2a mutants appears to develop normally through PMI but 30-40% of the pollen grain fail to undergo this mitotic division and then of those that did pass through another 20-30% never go through the next round of cell division (PMII). The variety of different ploidy levels measured in generative cells arrested at the PMII phase indicate that they could be blocked at the G1 S or G2. Levels of myc:KRP6 increase in the double mutant suggesting that this protein is a putative substrate of this E3 ubiquitin ligase. And many of the aberrant phenotypes observed in the double mutant can be improved when KRP6 levels are decreased by RNAi. FUNCTION: E3 ubiquitin-protein ligase involved in the positive regulation of the gametogenesis progression. Mediates the proteasomal degradation of KRP6, a cyclin-dependent kinase inhibitor which accumulates during meiosis and blocks the progression of subsequent mitoses during gametophyte development. Functions in association with RHF2A (PubMed:18552199). Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro (PubMed:15644464). {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:18552199}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 40284 E3 ubiquitin-protein ligase RHF1A (EC 2.3.2.27) (RING-H2 finger F1a) (RING-H2 zinc finger protein RHF1a) (RING-type E3 ubiquitin transferase RHF1A) membrane [GO:0016020]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; megagametogenesis [GO:0009561]; microgametogenesis [GO:0055046]; proteasomal protein catabolic process [GO:0010498]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination [GO:0016567]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of cell cycle [GO:0051726] DEVELOPMENTAL STAGE: Expressed in emerging floral primordia and then in stamens and carpels. Expressed first in stamen primordia, then in pollen mother cells and tapetal cells and later in microspores until flower stage 11. Expressed in carpels throughout flower development from primordia to the mature embryo sac stage. Expressed in developing embryo. {ECO:0000269|PubMed:18552199}. TISSUE SPECIFICITY: Expressed in stems, flowers, green siliques, cauline leaves, seeds and roots. {ECO:0000269|PubMed:9781696}. locus:2129525; AT4G14220 E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411DSAF NCRK Q8VYY5 NCRK_ARATH Receptor-like serine/threonine-protein kinase NCRK (EC 2.7.11.1) 2.7.11.1 62192 Receptor-like serine/threonine-protein kinase NCRK (EC 2.7.11.1) endomembrane system [GO:0012505]; endosome [GO:0005768]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; GTPase binding [GO:0051020]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468]; xylem development [GO:0010089] TISSUE SPECIFICITY: Mostly expressed in leaf primordia, root and shoot apical meristems, lateral root primordia, and stele of older roots and hypocotyls. In leaves and cotyledons, highest levels observed in trichomes, vasculatures, and hydathode endothem. {ECO:0000269|PubMed:18088316}. locus:2062824; AT2G28250 receptor-like serine threonine-protein kinase Os02g0110600 protein (Putative receptor protein kinase PERK1),Os02g0110600 protein Q6Z8Z2,Q6Z8Z4,A0A0P0VDZ6 Q6Z8Z2_ORYSJ,Q6Z8Z4_ORYSJ,A0A0P0VDZ6_ORYSJ P0501G04.13-3 Os02g0110600 OSNPB_020110600,P0501G04.13-2 Os02g0110600 OSNPB_020110600,Os02g0110600 OSNPB_020110600 ENOG411DSAG PPH1 P49599 P2C57_ARATH Protein phosphatase 2C 57 (AtPP2C57) (EC 3.1.3.16) (Protein phosphatase 2C PPH1) (PP2C PPH1) Increased growth rate under low light-D. Leister-2010 3.1.3.16 42719 Protein phosphatase 2C 57 (AtPP2C57) (EC 3.1.3.16) (Protein phosphatase 2C PPH1) (PP2C PPH1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleolus [GO:0005730]; nucleus [GO:0005634]; thylakoid [GO:0009579]; metal ion binding [GO:0046872]; phosphatase activity [GO:0016791]; protein serine/threonine phosphatase activity [GO:0004722]; dephosphorylation [GO:0016311]; photosynthetic electron transport chain [GO:0009767]; photosystem stoichiometry adjustment [GO:0080005] locus:2137400; AT4G27800 phosphatase 2C Probable protein phosphatase 2C 5 (OsPP2C05) (EC 3.1.3.16) Q5JKN1 P2C05_ORYSJ Os01g0552300 LOC_Os01g37130 OSJNBa0066C06.19 ENOG411DSAA Q8RY56,A0A1P8APC7,F4HPV8 Q8RY56_ARATH,A0A1P8APC7_ARATH,F4HPV8_ARATH At1g60560/F8A5_10 (SWIM zinc finger family protein),SWIM zinc finger family protein 80978,52776,57688 At1g60560/F8A5_10 (SWIM zinc finger family protein),SWIM zinc finger family protein zinc ion binding [GO:0008270] locus:2036541; AT1G60560 NA Os09g0309100 protein (SWIM zinc finger family protein-like) (cDNA clone:J033095P15, full insert sequence),Os09g0309100 protein (Fragment) Q69L44,A0A0P0XKY5,A0A0P0XJX1 Q69L44_ORYSJ,A0A0P0XKY5_ORYSJ,A0A0P0XJX1_ORYSJ Os09g0309100 OsJ_28802 OSJNBa0019B22.12 OSJNBa0092O08.32 OSNPB_090309100,Os09g0309100 OSNPB_090309100 ENOG411DSAB KNAT3,KNAT4 P48000,P48001,F4JWP8 KNAT3_ARATH,KNAT4_ARATH,F4JWP8_ARATH Homeobox protein knotted-1-like 3 (Protein KNAT3),Homeobox protein knotted-1-like 4 (Protein KNAT4),Homeobox protein knotted-1-like 3 No visible root phenotype. 47600,44385,46394 Homeobox protein knotted-1-like 3 (Protein KNAT3),Homeobox protein knotted-1-like 4 (Protein KNAT4),Homeobox protein knotted-1-like 3 cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to cytokine stimulus [GO:0071345]; detection of cytokinin stimulus [GO:0009722]; response to light stimulus [GO:0009416],cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to light stimulus [GO:0009416],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:2146945;,locus:2184911; AT5G25220,AT5G11060 Homeobox protein knotted-1-like Homeobox protein knotted-1-like 2 (Homeobox protein HOS58),Homeobox protein knotted-1-like 11 (Homeobox protein HOS59),Homeobox protein knotted-1-like 13 (Homeobox protein OSH45),Os08g0292900 protein (Fragment) Q0E3C3,Q94LW4,Q0J6N4,A0A0P0XEB4 KNOS2_ORYSJ,KNOSB_ORYSJ,KNOSD_ORYSJ,A0A0P0XEB4_ORYSJ HOS58 Os02g0182800 LOC_Os02g08544,HOS59 Os06g0646600 LOC_Os06g43860 OJ1226_A12.18 OSJNBa0062J02.2,OSH45 Os08g0292900 LOC_Os08g19650 OJ1705_A03.8 OSJNBb0075O18.121,Os08g0292900 OSNPB_080292900 FUNCTION: Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. ENOG411DSAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphotransferase enzyme family Casein kinase II, alpha chain, putative, expressed (Os03g0763000 protein) (Putative casein kinase alpha subunit) (cDNA clone:J023014H13, full insert sequence) Q8W5G9 Q8W5G9_ORYSJ LOC_Os03g55490 Os03g0763000 OSJNBa0002J24.6 OSNPB_030763000 ENOG411DSAQ PPT1 Q8RXN3,F4IB52 PPT1_ARATH,F4IB52_ARATH Phosphoenolpyruvate/phosphate translocator 1, chloroplastic (AtPPT1) (Protein CAB UNDEREXPRESSED 1),Nucleotide-sugar transporter family protein DISRUPTION PHENOTYPE: Reticulate leaf phenotype. Reduced number of leaf palisade mesophyll cells and increased bundle sheath cells. Small chloroplasts in mesophyll cells. Reduced photosynthetic electron transport rate. Under-expression of CAB3 protein. Reduced levels of aromatic amino acids and phenolic compounds derived from shikimate pathway. {ECO:0000269|PubMed:14617088, ECO:0000269|PubMed:14617097}. Reticulated leaves; Abnormal chloroplasts in leaf mesophyll layer-J. Chory-1999 FUNCTION: Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP), 2-phosphoglycerate, 3-phosphoglycerate and dihydroxyacetone phosphate. Imports PEP to the chloroplast stroma as one substrate of the shikimate pathway, from which aromatic amino acids and a variety of secondary products derive. Required for correct leaf mesophyll cell development and expression of chlorophyll a/b binding protein 3 (CAB3). {ECO:0000269|PubMed:10488230, ECO:0000269|PubMed:14617088, ECO:0000269|PubMed:14617097, ECO:0000269|PubMed:17981875}. 44224,10002 Phosphoenolpyruvate/phosphate translocator 1, chloroplastic (AtPPT1) (Protein CAB UNDEREXPRESSED 1),Nucleotide-sugar transporter family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; plastid inner membrane [GO:0009528]; phosphoenolpyruvate:phosphate antiporter activity [GO:0015121]; phosphoglycerate transmembrane transporter activity [GO:0015120]; phosphoenolpyruvate transport [GO:0015714]; phosphoglycerate transport [GO:0015713],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] TISSUE SPECIFICITY: Expressed in root columella, lateral root cap and root vasculature tissue. In leaves, highly expressed in xylem parenchyma cells. In flowers, expressed in sepals, petals, filaments of the stamens, anthers and stigma. {ECO:0000269|PubMed:14617097}. locus:2145944;,locus:2018650; AT5G33320,AT1G43310 phosphate translocator Phosphoenolpyruvate/phosphate translocator 1, chloroplastic (OsPPT1),Phosphoenolpyruvate/phosphate translocator 2, chloroplastic (OsPPT2),Os08g0344600 protein (Fragment) Q69VR7,Q84QU8,A0A0P0XER0 PPT1_ORYSJ,PPT2_ORYSJ,A0A0P0XER0_ORYSJ PPT1 Os09g0297400 LOC_Os09g12600 OJ1381_H04.7 OsJ_28749 P0592C05.31,PPT2 Os08g0344600 LOC_Os08g25624 OJ1119_B10.35 P0410E11.104,Os08g0344600 OSNPB_080344600 FUNCTION: Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP) and dihydroxyacetone phosphate. {ECO:0000269|PubMed:17981875}. ENOG411DSAR OST3B,OST3A Q9SYB5,F4I8X8 OST3B_ARATH,OST3A_ARATH Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B,Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3A FUNCTION: May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. {ECO:0000250}. Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 38806,39162 Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B,Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3A chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; oligosaccharyltransferase complex [GO:0008250]; plasma membrane [GO:0005886]; pollen tube reception [GO:0010483]; protein N-linked glycosylation [GO:0006487]; protein N-linked glycosylation via asparagine [GO:0018279],integral component of membrane [GO:0016021]; oligosaccharyltransferase complex [GO:0008250]; protein N-linked glycosylation via asparagine [GO:0018279] locus:2195743;,locus:2200086; AT1G61790,AT1G11560 OST3 OST6 family protein Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 Q94I55 OST3_ORYSJ OST3 Os03g0565100 LOC_Os03g36730 OSJNBa0084C09.17 FUNCTION: May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. {ECO:0000250}. ENOG411DSAS rsgA,emb1688 F4HTL8,Q4V399,A0A1P8AUP9,A0A1P8AUE0 RSGA2_ARATH,RSGA1_ARATH,A0A1P8AUP9_ARATH,A0A1P8AUE0_ARATH Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial,Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial (EC 3.6.1.-) (Protein EMBRYO DEFECTIVE 1688),Minichromosome maintenance (MCM2/3/5) family protein DISRUPTION PHENOTYPE: Embryo defective. {ECO:0000269|PubMed:15266054}. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit (By similarity). Required for embryo development (PubMed:15266054). {ECO:0000255|HAMAP-Rule:MF_01820, ECO:0000269|PubMed:15266054}. ARA:GQT-1401-MONOMER; 3.6.1.- 32955,49155,55647 Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial,Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial (EC 3.6.1.-) (Protein EMBRYO DEFECTIVE 1688),Minichromosome maintenance (MCM2/3/5) family protein mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924],mitochondrion [GO:0005739]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; rRNA binding [GO:0019843]; ribosome biogenesis [GO:0042254],GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2008788;,locus:2197618; AT1G67460,AT1G67440 ribosome biogenesis GTPase Os04g0381600 protein A0A0P0W9L9 A0A0P0W9L9_ORYSJ Os04g0381600 OSNPB_040381600 ENOG411E4E0 MUB1,MUB2 Q9MAB9,Q8LCS8,A0A1P8BE26 MUB1_ARATH,MUB2_ARATH,A0A1P8BE26_ARATH Membrane-anchored ubiquitin-fold protein 1 (AtMUB1) (Membrane-anchored ub-fold protein 1),Membrane-anchored ubiquitin-fold protein 2 (AtMUB2) (Membrane-anchored ub-fold protein 2) (NTGP5),Membrane-anchored ubiquitin-fold protein 2 FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. MISCELLANEOUS: Heat stable and remains soluble at temperatures exceeding 90 degrees Celsius. 12821,13709,10792 Membrane-anchored ubiquitin-fold protein 1 (AtMUB1) (Membrane-anchored ub-fold protein 1),Membrane-anchored ubiquitin-fold protein 2 (AtMUB2) (Membrane-anchored ub-fold protein 2) (NTGP5),Membrane-anchored ubiquitin-fold protein 2 plasma membrane [GO:0005886] TISSUE SPECIFICITY: Ubiquitous, but three fold higher expression in stamens. {ECO:0000269|PubMed:16831869}. locus:2102172;,locus:2180937; AT3G01050,AT5G15460 membrane-anchored ubiquitin-fold protein Membrane-anchored ubiquitin-fold protein 1 (Membrane-anchored ub-fold protein 1) (OsMUB1) Q75GT2 MUB1_ORYSJ MUB1 Os03g0426800 LOC_Os03g31290 OsJ_11344 OSJNBa0020H02.2 FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. {ECO:0000250|UniProtKB:Q9MAB9}. ENOG411E4E1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant (LEA) group 1 Os08g0327700 protein (Putative seed maturation protein) (cDNA clone:002-135-A01, full insert sequence) Q6Z0I0 Q6Z0I0_ORYSJ Os08g0327700 Os08g0327700 OSJNBa0049I01.9 OSNPB_080327700 P0670E08.20 ENOG411E4E2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0396000 protein),Os02g0609600 protein Q94LG6,B9F107 Q94LG6_ORYSJ,B9F107_ORYSJ LOC_Os03g27850 Os03g0396000 OSJNBb0004M10.12 OSNPB_030396000,Os02g0609600 OsJ_07479 OSNPB_020609600 ENOG411E4E4 Q9C8B9 Q9C8B9_ARATH Uncharacterized protein F10O5.2 (VQ motif-containing protein) 33214 Uncharacterized protein F10O5.2 (VQ motif-containing protein) locus:2007641; AT1G35830 VQ motif NA NA NA NA NA NA NA ENOG411E4E5 F4I0N3,A0A1P8AP95,F4I0N4 Y1572_ARATH,A0A1P8AP95_ARATH,F4I0N4_ARATH WEB family protein At1g75720,WEB family protein (DUF827) 22482,17761,22723 WEB family protein At1g75720,WEB family protein (DUF827) cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2005669; AT1G75720 NA OSJNBb0050O03.3 protein (Os04g0116200 protein) (cDNA clone:002-115-G03, full insert sequence),Os04g0116900 protein Q7XT19,Q0JFC4 Q7XT19_ORYSJ,Q0JFC4_ORYSJ Os04g0116200 Os04g0116200 OSJNBb0050O03.3 OSNPB_040116200,Os04g0116900 Os04g0116900 OsJ_13575 OSNPB_040116900 ENOG411E4E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ripening-related protein 2-like NA NA NA NA NA NA NA ENOG411E4E7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MutS domain V NA NA NA NA NA NA NA ENOG411E4E8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF962) Os08g0433600 protein (cDNA clone:J013098I15, full insert sequence) Q6ZA92 Q6ZA92_ORYSJ Os08g0433600 OSNPB_080433600 P0431A03.22 ENOG411E4E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os01g0838600 protein (Zinc finger transcription factor ZFP19) Q5NA12 Q5NA12_ORYSJ Os01g0838600 OSNPB_010838600 P0031D11.18 ENOG411E4EQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA two-component response regulator ARR9-like NA NA NA NA NA NA NA ENOG411E4ER F4JJ02 F4JJ02_ARATH RING/U-box superfamily protein 42181 RING/U-box superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:505006547; AT4G33565 finger protein NA NA NA NA NA NA NA ENOG411E4ET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os04g0553100 protein A0A0N7KJH1 A0A0N7KJH1_ORYSJ Os04g0553100 OSNPB_040553100 ENOG411E4EU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Harpin-induced family protein-like (Os09g0532200 protein) Q652J9 Q652J9_ORYSJ Os09g0532200 Os09g0532200 OJ1254_E07.26 OSNPB_090532200 P0515E01.11 ENOG411E4EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0714800 protein (WRKY transcription factor) (WRKY13-like) (WRKY26) (cDNA clone:002-144-E10, full insert sequence) Q5JLU2 Q5JLU2_ORYSJ Os01g0714800 Os01g0714800 B1131B07.10 OSNPB_010714800 ENOG411E4EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP Os05g0595200 protein (cDNA clone:J023052A08, full insert sequence),Os05g0595200 protein Q0DFE6,Q5TKF6 Q0DFE6_ORYSJ,Q5TKF6_ORYSJ Os05g0595200 Os05g0595200 OSNPB_050595200,Os05g0595200 OSJNBa0030I14.10 OSJNBb0086G17.1 OSNPB_050595200 ENOG411E4EX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0309600 protein Q69N87 Q69N87_ORYSJ Os09g0309600 Os09g0309600 OsJ_28806 OSJNBa0019B22.19 OSNPB_090309600 ENOG411E4EY ndhO Q9S829 NDHO_ARATH NAD(P)H-quinone oxidoreductase subunit O, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit O) (NDH subunit O) (NDH-O) (NADH-plastoquinone oxidoreductase subunit O) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:15608332}. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 1.6.5.- 17657 NAD(P)H-quinone oxidoreductase subunit O, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit O) (NDH subunit O) (NDH-O) (NADH-plastoquinone oxidoreductase subunit O) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; plasma membrane [GO:0005886]; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]; NADH dehydrogenase complex (plastoquinone) assembly [GO:0010258]; transport [GO:0006810] locus:2027247; AT1G74880 Cyanobacterial and plant NDH-1 subunit O Os01g0959900 protein (cDNA clone:001-014-G10, full insert sequence),Os01g0959900 protein (Fragment) Q5JN29,A0A0P0VDB1 Q5JN29_ORYSJ,A0A0P0VDB1_ORYSJ P0401G10.21-1 Os01g0959900 OSNPB_010959900,Os01g0959900 OSNPB_010959900 ENOG411E4EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0320300 protein (cDNA clone:001-019-G03, full insert sequence) (cDNA clone:J023101J24, full insert sequence) Q5Z9Y9 Q5Z9Y9_ORYSJ P0592B08.36-1 P0578B12.1-1 Os06g0320300 OsJ_21155 OSNPB_060320300 ENOG411E4EB Q5XVB0 Q5XVB0_ARATH Low-temperature-induced protein 42954 Low-temperature-induced protein locus:2102782; AT3G46750 NA NA NA NA NA NA NA NA ENOG411E4EC GRXC7,GRXC8 Q96305,Q8LF89 GRXC7_ARATH,GRXC8_ARATH Glutaredoxin-C7 (AtGrxC7) (Protein ROXY 1),Glutaredoxin-C8 (AtGrxC8) (Protein ROXY 2) DISRUPTION PHENOTYPE: Plants show a reduced number of petal primordia and abnormalities during further petal development. Defection in sporogenous cell formation in adaxial anther lobes when associated with the disruption of GRXC8/ROXY2 leading to fertility defects. {ECO:0000269|PubMed:15728668, ECO:0000269|PubMed:18036205}.,DISRUPTION PHENOTYPE: No visible phenotype. Defection in sporogenous cell formation in adaxial anther lobes when associated with the disruption of GRXC7/ROXY1 leading to fertility defects. {ECO:0000269|PubMed:18036205}. Double mutant displays pentamerous flowers typical of PAN mutants but also displays defects in later stages of petal development. Decreased petal number-S. Zachgo-2009 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). Involved in flower development as a regulator of petal primorida initiation and further petal morphogenesis. May mediate post-translational modifications of target proteins required for normal petal organ initiation and morphogenesis. ROXY1/TGA protein interactions can occur in vivo and support their biological relevance in petal development. May be involved in the regulation of the floral regulator class C gene AG (AGAMOUS). {ECO:0000250, ECO:0000269|PubMed:15728668, ECO:0000269|PubMed:18036205, ECO:0000269|PubMed:19218396}.,FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). Involved in flower development. {ECO:0000250, ECO:0000269|PubMed:18036205}. 14202,14970 Glutaredoxin-C7 (AtGrxC7) (Protein ROXY 1),Glutaredoxin-C8 (AtGrxC8) (Protein ROXY 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; negative regulation of transcription, DNA-templated [GO:0045892]; petal development [GO:0048441]; petal formation [GO:0048451]; stamen morphogenesis [GO:0048448],cytoplasm [GO:0005737]; nucleus [GO:0005634]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; negative regulation of transcription, DNA-templated [GO:0045892] DEVELOPMENTAL STAGE: Expressed first in the inflorescence apex, then in young floral primordia, and in the petal and stamen primordia (PubMed:15728668). Localized to the tapetum and middle layers (PubMed:20805327). {ECO:0000269|PubMed:15728668, ECO:0000269|PubMed:20805327}. TISSUE SPECIFICITY: Highly expressed in inflorescences, roots, and siliques. Expressed at lower levels in mature flowers. {ECO:0000269|PubMed:15728668, ECO:0000269|PubMed:18036205}.,TISSUE SPECIFICITY: Weakly expressed throughout the inflorescence apical meristem and in young buds (PubMed:18036205). Localized to the tapetum and middle layers (PubMed:20805327). {ECO:0000269|PubMed:18036205, ECO:0000269|PubMed:20805327}. locus:2078663;,locus:2174718; AT3G02000,AT5G14070 Glutaredoxin Glutaredoxin-C3 (Protein ROXY 2),Glutaredoxin-C5 (Protein ROXY 1) Q6K609,Q0JDM4 GRXC3_ORYSJ,GRXC5_ORYSJ GRXC3 ROXY2 Os02g0512400 LOC_Os02g30850 OJ1789_D08.10,GRXC5 ROXY1 Os04g0393500 LOC_Os04g32300 OSJNBa0072K14.2 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E4ED MMI9.1 Q9LVA3 Q9LVA3_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein (Putative DC1.2 homolog) (Ripening-related protein-like; contains similarity to pectinesterase) ARA:GQT-722-MONOMER; 22336 Plant invertase/pectin methylesterase inhibitor superfamily protein (Putative DC1.2 homolog) (Ripening-related protein-like; contains similarity to pectinesterase) enzyme inhibitor activity [GO:0004857] locus:2167893; AT5G62360 pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E4EE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0507000 protein (cDNA clone:002-136-A07, full insert sequence),Os05g0564601 protein (Fragment) Q0DGX0,A0A0P0WQP0 Q0DGX0_ORYSJ,A0A0P0WQP0_ORYSJ Os05g0507000 Os05g0507000 OsJ_19136 OSNPB_050507000,Os05g0564601 OSNPB_050564601 ENOG411E4EF PRO3,PRO4 Q38904,Q38905 PROF3_ARATH,PROF4_ARATH Profilin-3,Profilin-4 FUNCTION: Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG (By similarity). {ECO:0000250}. 14418,14550 Profilin-3,Profilin-4 actin cytoskeleton [GO:0015629]; apoplast [GO:0048046]; cell cortex [GO:0005938]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; actin monomer binding [GO:0003785]; sequestering of actin monomers [GO:0042989],actin cytoskeleton [GO:0015629]; cell cortex [GO:0005938]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; actin monomer binding [GO:0003785]; actin cytoskeleton organization [GO:0030036]; sequestering of actin monomers [GO:0042989] TISSUE SPECIFICITY: Floral tissues. locus:2118309;,locus:2051945; AT4G29340,AT2G19770 Binds to actin and affects the structure of the cytoskeleton. At high concentrations profilin prevents the polymerization of actin whereas it enhances it at low concentrations (By similarity) NA NA NA NA NA NA NA ENOG411E4EG MRG7.9 Q9FK57,Q3E9G1 Q9FK57_ARATH,Q3E9G1_ARATH Gb|AAF00631.1 (Transmembrane protein) (Uncharacterized protein At5g18130),Transmembrane protein 31430,28320 Gb|AAF00631.1 (Transmembrane protein) (Uncharacterized protein At5g18130),Transmembrane protein integral component of membrane [GO:0016021] locus:2172364; AT5G18130 NA NA NA NA NA NA NA NA ENOG411E4EH Q9LJ85 Q9LJ85_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At3g22620) 20779 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At3g22620) chloroplast envelope [GO:0009941] locus:2828523; AT3G22620 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411E4EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os03g0709100 protein (Plastocyanin-like domain containing protein, expressed) (Plastocyanin-like domain, putative) (cDNA clone:001-024-C04, full insert sequence) Q53RK4 Q53RK4_ORYSJ Os03g0709100 LOC_Os03g50140 Os03g0709100 OsJ_12299 OSNPB_030709100 ENOG411E4EJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NA NA NA NA NA NA NA ENOG411E4EK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q2R8W3,Q2R8V8,A0A0P0Y0H1,A0A0P0Y0F7 Q2R8W3_ORYSJ,Q2R8V8_ORYSJ,A0A0P0Y0H1_ORYSJ,A0A0P0Y0F7_ORYSJ Os11g0214400 LOC_Os11g10800 Os11g0214400 OsJ_01355 OSNPB_110214400,LOC_Os11g10850 Os11g0214900 OsJ_33363 OSNPB_110214900,Os11g0214700 OSNPB_110214700,Os11g0214100 OSNPB_110214100 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E4EM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Expressed protein (Os11g0154300 protein) (cDNA clone:J023144D16, full insert sequence),Os12g0156000 protein Q53QG6,A0A0P0Y713 Q53QG6_ORYSJ,A0A0P0Y713_ORYSJ Os11g0154300 LOC_Os11g05600 Os11g0154300 OsJ_33008 OSNPB_110154300,Os12g0156000 OSNPB_120156000 ENOG411E4EN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os10g0104300 protein A0A0P0XS11 A0A0P0XS11_ORYSJ Os10g0104300 OSNPB_100104300 ENOG411EC98 GA3OX3 Q9SVS8 G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 (EC 1.14.11.15) (GA 3-oxidase 3) (AtGA3ox3) (AtGA3ox4) (Gibberellin 3 beta-hydroxylase 3) Dwarf phenotype early flowers are sterile while late flowers are fertile. Reduced silique length. FUNCTION: Converts the inactive gibbberellin (GA) precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1. Involved in the production of bioactive GA for reproductive development. {ECO:0000269|PubMed:16460513}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT4G21690-MONOMER; 1.14.11.15 39211 Gibberellin 3-beta-dioxygenase 3 (EC 1.14.11.15) (GA 3-oxidase 3) (AtGA3ox3) (AtGA3ox4) (Gibberellin 3 beta-hydroxylase 3) gibberellin 3-beta-dioxygenase activity [GO:0016707]; metal ion binding [GO:0046872]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in flower clusters and siliques. {ECO:0000269|PubMed:16460513, ECO:0000269|PubMed:17277098}. locus:2119068; AT4G21690 gibberellin 3-oxidase 3 NA NA NA NA NA NA NA ENOG411EC92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) NA NA NA NA NA NA NA ENOG411EC97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalyzes the synthesis of activated sulfate (By similarity) NA NA NA NA NA NA NA ENOG411EC95 CHX23,CHX21 Q8VYD4,Q9SKA9,A0A1P8B0K5 CHX23_ARATH,CHX21_ARATH,A0A1P8B0K5_ARATH Cation/H(+) antiporter 23, chloroplastic (Protein CATION/H+ EXCHANGER 23) (AtCHX23),Cation/H(+) antiporter 21 (Protein CATION/H+ EXCHANGER 21) (AtCHX21),Cation/H+ exchanger 21 DISRUPTION PHENOTYPE: No visible phenotype when grown under normal growth conditions (PubMed:21976771). Mutants with impaired chloroplast development that display aberrant chloroplast structure (PubMed:15220473). No defect in male fertility, due to redundancy with CHX21. Chx21 and chx23 double mutants are male sterile (PubMed:21239645). {ECO:0000269|PubMed:15220473, ECO:0000269|PubMed:21239645, ECO:0000269|PubMed:21976771}.,DISRUPTION PHENOTYPE: Mutants display a reduced rosette width, a later flowering time and an altered leaf K(+) and Na(+) contents (PubMed:16513816). Reduced root growth when exposed to elevated sodium concentration (PubMed:21976771). No defect in male fertility, due to redundancy with CHX23. Chx21 and chx23 double mutants are male sterile (PubMed:21239645). {ECO:0000269|PubMed:16513816, ECO:0000269|PubMed:21239645, ECO:0000269|PubMed:21976771}. FUNCTION: Operates as a K(+)/H(+) antiporter or Na(+)/H(+) antiporter of the chloroplast envelope that functions in pH homeostasis and chloroplast development. Monovalent cation transporter with a preference for Cs(+), K(+) and Rb(+) relative to Na(+) or Li(+). Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte. {ECO:0000269|PubMed:15220473, ECO:0000269|PubMed:21239645, ECO:0000269|PubMed:21976771}.,FUNCTION: Operates as a Na(+)/H(+) antiporter that plays a role in regulation of xylem Na(+) concentration and, consequently, Na(+) accumulation in the leaf. Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte. {ECO:0000269|PubMed:16513816, ECO:0000269|PubMed:21239645, ECO:0000269|PubMed:21976771}. 95867,91982,81296 Cation/H(+) antiporter 23, chloroplastic (Protein CATION/H+ EXCHANGER 23) (AtCHX23),Cation/H(+) antiporter 21 (Protein CATION/H+ EXCHANGER 21) (AtCHX21),Cation/H+ exchanger 21 chloroplast membrane [GO:0031969]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; monovalent cation:proton antiporter activity [GO:0005451]; pollen tube guidance [GO:0010183]; potassium ion transmembrane transport [GO:0071805]; regulation of pH [GO:0006885]; sodium ion transport [GO:0006814],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; monovalent cation:proton antiporter activity [GO:0005451]; monovalent inorganic cation transport [GO:0015672]; pollen tube guidance [GO:0010183]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885]; sodium ion transport [GO:0006814],integral component of membrane [GO:0016021]; monovalent cation:proton antiporter activity [GO:0005451]; potassium ion transport [GO:0006813]; sodium ion transport [GO:0006814] TISSUE SPECIFICITY: Specifically expressed in flower buds and pollen. Expressed in leaves, roots and stems (PubMed:15220473). {ECO:0000269|PubMed:15220473, ECO:0000269|PubMed:15347787, ECO:0000269|PubMed:21239645, ECO:0000269|PubMed:21976771}.,TISSUE SPECIFICITY: Specifically expressed in root endodermal cells (PubMed:16513816). Expressed in seedlings, roots, leaves, flowers, flower buds and pollen. {ECO:0000269|PubMed:16513816, ECO:0000269|PubMed:21239645, ECO:0000269|PubMed:21976771}. locus:2031968;,locus:2045283; AT1G05580,AT2G31910 Cation H exchanger NA NA NA NA NA NA NA ENOG411EE87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Dedicator of cytokinesis NA NA NA NA NA NA NA ENOG411EE84 F5O8.16 Q9ZUC6,Q9ZUD4,Q1PFT1,Q1PFT0,Q1PFS8,F4I690,A0A1P8ANV1,F4I6A3,B3H789,A8MQQ6,B3H736,A0A1P8AW06 Q9ZUC6_ARATH,Q9ZUD4_ARATH,Q1PFT1_ARATH,Q1PFT0_ARATH,Q1PFS8_ARATH,F4I690_ARATH,A0A1P8ANV1_ARATH,F4I6A3_ARATH,B3H789_ARATH,A8MQQ6_ARATH,B3H736_ARATH,A0A1P8AW06_ARATH Expressed protein (F5O8.24 protein),Expressed protein (F5O8.16 protein),Uncharacterized protein 32192,31322,30551,25347,31635,24909,22251,26487,21462,22825,30324,11837 Expressed protein (F5O8.24 protein),Expressed protein (F5O8.16 protein),Uncharacterized protein integral component of membrane [GO:0016021] locus:2034883;,locus:2034840;,locus:2034818;,locus:2028916;,locus:2034828; AT1G23690,AT1G23600,AT1G23570,AT1G23590,AT1G23580 Domain of unknown function DUF220 NA NA NA NA NA NA NA ENOG411EE8G MSSP1 Q96290 MSSP1_ARATH Monosaccharide-sensing protein 1 (Monosaccharide transporter 1) (Sugar transporter MSSP1) (Sugar transporter MT1) No variation in sucrose content of leaves placed under both normal temperature or cold treatment (24h) compared to wild type leaves.,No visible phenotype.,Slight reduction (~30%) of glucose and fructose contents in leaves whereas sucrose content is similar to that of wild type under normal growth conditions.,The vacuoles of this mutant exhibit a substantially reduced capacity to import glucose.,Although no variation in sucrose content of leaves placed under normal temperature conditions compared to wild type leaves a substantial decrease in sucrose content was observed when the plants were placed under cold treatment (24h).,Under cold treatment (24h) the decrease in glucose and fructose content in leaves is more drastically reduced compared to that of wild type and even that of the tmt1 single mutants.,Under normal growth temperature conditions the double mutant leaves content in glucose and fructose is slightly reduced (~30%) in a similar fashion to that observed with the tmt1 single mutants.,Under normal temperature conditions a substantial reduction in glucose and fructose contents in leaves is observed compared to wild type and even the single tmt1 and double tmt1/tmt2 mutants. Slightly low fructose and glucose levels; Complete loss of glucose and fructose accumulation at low temperature; No other phenotypes detected-H. Neuhaus-2006 79485 Monosaccharide-sensing protein 1 (Monosaccharide transporter 1) (Sugar transporter MSSP1) (Sugar transporter MT1) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; response to nematode [GO:0009624] locus:2030377; AT1G20840 tonoplast monosaccharide transporter1 NA NA NA NA NA NA NA ENOG411EE8D F15H11.21 Q9SSJ7 Q9SSJ7_ARATH At1g71015 (F15H11.21 protein) (Plastid movement impaired protein) 22256 At1g71015 (F15H11.21 protein) (Plastid movement impaired protein) locus:504956263; AT1G71015 NA NA NA NA NA NA NA NA ENOG411EE8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Ac NA NA NA NA NA NA NA ENOG411EE8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin NA NA NA NA NA NA NA ENOG411EE8H FIM3,FIM1 Q9FJ70,Q7G188,C0Z268,A0A1P8B5M7 FIMB3_ARATH,FIMB1_ARATH,C0Z268_ARATH,A0A1P8B5M7_ARATH Fimbrin-3 (AtFIM3) (Fimbrin3),Fimbrin-1 (AtFIM1) (Fimbrin1),AT4G26700 protein (Fimbrin 1),Fimbrin 1 FUNCTION: Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus. {ECO:0000250|UniProtKB:Q7G188}.,FUNCTION: Cross-links actin filaments (F-actin) in a calcium independent manner. Induces the formation of actin aggregates. Stabilizes and prevents F-actin depolymerization mediated by profilin. Key regulator of actin cytoarchitecture, probably involved in cell cycle, cell division, cell elongation and cytoplasmic tractus. {ECO:0000269|PubMed:11123801, ECO:0000269|PubMed:11506361}. MISCELLANEOUS: Cross-links actin with a constant of dissociation of 0.55 uM and stoichiometry of 4 molecules of F-actin for one molecule of FIM1. {ECO:0000269|PubMed:11123801}. 79788,76928,65527,60496 Fimbrin-3 (AtFIM3) (Fimbrin3),Fimbrin-1 (AtFIM1) (Fimbrin1),AT4G26700 protein (Fimbrin 1),Fimbrin 1 actin filament [GO:0005884]; actin filament bundle [GO:0032432]; vacuole [GO:0005773]; actin filament binding [GO:0051015]; metal ion binding [GO:0046872]; actin crosslink formation [GO:0051764]; actin filament bundle assembly [GO:0051017]; actin filament network formation [GO:0051639],actin filament [GO:0005884]; actin filament bundle [GO:0032432]; cytoplasm [GO:0005737]; actin filament binding [GO:0051015]; metal ion binding [GO:0046872]; actin crosslink formation [GO:0051764]; actin filament bundle assembly [GO:0051017]; actin filament network formation [GO:0051639]; circadian rhythm [GO:0007623],actin binding [GO:0003779] TISSUE SPECIFICITY: Constitutively expressed in roots, leaves, flowers and siliques, and to lower extent in stems. {ECO:0000269|PubMed:9484459}. locus:2173867;,locus:2116382; AT5G55400,AT4G26700 CH NA NA NA NA NA NA NA ENOG411EE8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EE8Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411DZNX Q9LIE1,F4JJC1,Q0WQA4,F4I1K8 Q9LIE1_ARATH,F4JJC1_ARATH,Q0WQA4_ARATH,F4I1K8_ARATH HAT transposon superfamily (Transposase-like protein) (Uncharacterized protein At3g22220),HAT transposon superfamily,HAT dimerization domain-containing protein (Uncharacterized protein At3g17450),DNA binding protein 86390,86644,100526,34443 HAT transposon superfamily (Transposase-like protein) (Uncharacterized protein At3g22220),HAT transposon superfamily,HAT dimerization domain-containing protein (Uncharacterized protein At3g17450),DNA binding protein plasmodesma [GO:0009506]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983],DNA binding [GO:0003677] locus:2090429;,locus:2129600;,locus:2093606;,locus:2826161; AT3G22220,AT4G15020,AT3G17450,AT1G36095 transposon protein HAT dimerisation domain-containing protein-like (Os01g0379800 protein),HAT family dimerisation domain containing protein, expressed (Os03g0822900 protein) (cDNA clone:J013096O21, full insert sequence),Os05g0326663 protein,Os05g0275600 protein,Os01g0722550 protein,Os11g0500100 protein,Os12g0537000 protein,Os05g0256350 protein,Os05g0232800 protein Q5VNQ7,Q10BC8,A0A0P0WKW1,A0A0P0WK20,A0A0P0V7K5,A0A0P0Y2R1,A0A0P0YAW6,A0A0P0WJZ1,A0A0P0WJJ6 Q5VNQ7_ORYSJ,Q10BC8_ORYSJ,A0A0P0WKW1_ORYSJ,A0A0P0WK20_ORYSJ,A0A0P0V7K5_ORYSJ,A0A0P0Y2R1_ORYSJ,A0A0P0YAW6_ORYSJ,A0A0P0WJZ1_ORYSJ,A0A0P0WJJ6_ORYSJ Os01g0379800 B1096D03.3 B1150E06.26 OSNPB_010379800,Os03g0822900 LOC_Os03g60800 Os03g0822900 OsJ_13162 OSNPB_030822900,Os05g0326663 OSNPB_050326663,Os05g0275600 OSNPB_050275600,Os01g0722550 OSNPB_010722550,Os11g0500100 OSNPB_110500100,Os12g0537000 OSNPB_120537000,Os05g0256350 OSNPB_050256350,Os05g0232800 OSNPB_050232800 ENOG411DZNY CCX5 O04034 CCX5_ARATH Cation/calcium exchanger 5 (Protein CATION EXCHANGER 11) FUNCTION: Membrane-localized H(+)-dependent K(+) and Na(+) transporter. {ECO:0000269|PubMed:21945443}. R-ATH-425561;R-ATH-8949215; 59801 Cation/calcium exchanger 5 (Protein CATION EXCHANGER 11) integral component of membrane [GO:0016021]; nuclear periphery [GO:0034399]; plasma membrane [GO:0005886]; antiporter activity [GO:0015297]; potassium ion transmembrane transporter activity [GO:0015079]; sodium ion transmembrane transporter activity [GO:0015081]; high-affinity potassium ion import [GO:0010163]; sodium ion transport [GO:0006814] locus:2036049; AT1G08960 calcium exchanger Os11g0148000 protein (Sodium/calcium exchanger protein, expressed) (cDNA clone:002-141-B11, full insert sequence) Q2RAK6 Q2RAK6_ORYSJ Os11g0148000 LOC_Os11g05070 Os11g0148000 OSNPB_110148000 ENOG411DZNZ PCMP-E64 Q9FXA9 PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570 68278 Putative pentatricopeptide repeat-containing protein At1g56570 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; defense response to fungus [GO:0050832]; mitochondrial mRNA modification [GO:0080156]; response to abscisic acid [GO:0009737]; response to glucose [GO:0009749]; response to salt stress [GO:0009651] locus:2027589; AT1G56570 Pentatricopeptide repeat-containing protein Os01g0299200 protein,Os01g0299150 protein A0A0P0V1H7,A0A0P0V1C9 A0A0P0V1H7_ORYSJ,A0A0P0V1C9_ORYSJ Os01g0299200 OSNPB_010299200,Os01g0299150 OSNPB_010299150 ENOG411DZNU RKF3 P93050 RKF3_ARATH Probable LRR receptor-like serine/threonine-protein kinase RKF3 (EC 2.7.11.1) (Receptor-like kinase in flowers 3) 2.7.11.1 67224 Probable LRR receptor-like serine/threonine-protein kinase RKF3 (EC 2.7.11.1) (Receptor-like kinase in flowers 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transducer, downstream of receptor, with serine/threonine kinase activity [GO:0004702] TISSUE SPECIFICITY: Expressed in the whole plant at low levels. {ECO:0000269|PubMed:9484433, ECO:0000269|PubMed:9687063}. locus:2066390; AT2G48010 LRR receptor-like serine threonine-protein kinase Os01g0384300 protein (Receptor protein kinase PERK1-like protein) Q8LI83 Q8LI83_ORYSJ OSJNBb0093M23.7 Os01g0384300 OSNPB_010384300 ENOG411DZNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter ABC transporter G family member 25 (OsABCG25) (Putative white-brown complex homolog protein 26) (OsWBC26),Os10g0442900 protein B9G5Y5,A0A0P0XVC2 AB25G_ORYSJ,A0A0P0XVC2_ORYSJ ABCG25 WBC26 LOC_Os10g30610 Os10g0442900 Os10g0442950 OsJ_31680,Os10g0442900 OSNPB_100442900 ENOG411DZNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0197400 protein (cDNA clone:J023023L24, full insert sequence),Os08g0197500 protein (cDNA clone:J013151I04, full insert sequence),Os08g0199100 protein (cDNA clone:002-118-G08, full insert sequence),Os08g0199000 protein B7EGM4,Q0J7F8,B7EZS5,A0A0P0XD05 B7EGM4_ORYSJ,Q0J7F8_ORYSJ,B7EZS5_ORYSJ,A0A0P0XD05_ORYSJ Os08g0197400 OSNPB_080197400,Os08g0197500 Os08g0197500 OsJ_26355 OSNPB_080197500,Os08g0199100 OSNPB_080199100,Os08g0199000 OSNPB_080199000 ENOG411DZNQ APRL6,APRL4 Q9ZPE9,Q9SA00 APRL6_ARATH,APRL4_ARATH 5'-adenylylsulfate reductase-like 6 (Adenosine 5'-phosphosulfate reductase-like 6) (APR-like 6) (AtAPRL6),5'-adenylylsulfate reductase-like 4 (Adenosine 5'-phosphosulfate reductase-like 4) (APR-like 4) (AtAPRL4) 33402,35008 5'-adenylylsulfate reductase-like 6 (Adenosine 5'-phosphosulfate reductase-like 6) (APR-like 6) (AtAPRL6),5'-adenylylsulfate reductase-like 4 (Adenosine 5'-phosphosulfate reductase-like 4) (APR-like 4) (AtAPRL4) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976] locus:2138733;,locus:2008366; AT4G08930,AT1G34780 reductase-like 5'-adenylylsulfate reductase-like 2 (Adenosine 5'-phosphosulfate reductase-like 2) (APR-like 2) (OsAPRL2),5'-adenylylsulfate reductase-like 3 (Adenosine 5'-phosphosulfate reductase-like 3) (APR-like 3) (OsAPRL3),Os02g0754900 protein (Fragment) Q67VZ8,Q84P95,A0A0P0VPT4 APRL2_ORYSJ,APRL3_ORYSJ,A0A0P0VPT4_ORYSJ APRL2 Os06g0220800 LOC_Os06g11740 OsJ_20625 P0436F11.46 P0516A04.7,APRL3 Os02g0754900 LOC_Os02g51850 OsJ_08430 P0627E03.20,Os02g0754900 OSNPB_020754900 ENOG411DZNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os06g0642500 protein (Putative cytochrome P450) (cDNA clone:J013090O06, full insert sequence),Os01g0866775 protein,OSJNBb0016D16.2 protein (Os04g0587000 protein),Os06g0595220 protein,Os01g0181400 protein,Os06g0671300 protein (Fragment),Os02g0173401 protein,Os06g0642500 protein (Fragment) Q67WW1,Q5N9F0,Q7FAP3,A3BD90,A2ZQ01,Q0DA78,A0A0P0VFI9,A0A0P0WZP9 Q67WW1_ORYSJ,Q5N9F0_ORYSJ,Q7FAP3_ORYSJ,A3BD90_ORYSJ,A2ZQ01_ORYSJ,Q0DA78_ORYSJ,A0A0P0VFI9_ORYSJ,A0A0P0WZP9_ORYSJ P0416A11.13-1 Os06g0642500 OSNPB_060642500,P0505D12.41 Os01g0866775 OSNPB_010866775,Os04g0587000 OsJ_15939 OSJNBb0016D16.2 OSNPB_040587000,Os06g0595220 OsJ_21859 OSNPB_060595220,Os01g0181400 OsJ_00633 OSNPB_010181400,Os06g0671300 Os06g0671300 OSNPB_060671300,Os02g0173401 OSNPB_020173401,Os06g0642500 OSNPB_060642500 ENOG411DZNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat GAMYB-binding protein (Os06g0171900 protein) (Putative GAMYB-binding protein) (cDNA clone:J023128H22, full insert sequence),Os06g0171900 protein (Fragment) Q5SND4,A0A0P0WTA6 Q5SND4_ORYSJ,A0A0P0WTA6_ORYSJ Os06g0171900 OSJNBa0014B15.5 OSNPB_060171900 P0675A05.34,Os06g0171900 OSNPB_060171900 ENOG411DZNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytidylyltransferase family Os12g0105500 protein (Phosphatidate cytidylyltransferase family protein, expressed),Os11g0105800 protein (Phosphatidate cytidylyltransferase family protein, expressed) (cDNA clone:002-170-G04, full insert sequence) Q2QYV3,Q2RBN0 Q2QYV3_ORYSJ,Q2RBN0_ORYSJ Os12g0105500 LOC_Os12g01480 OsJ_34926 OSNPB_120105500,LOC_Os11g01450 Os11g0105800 OsJ_34917 OSNPB_110105800 ENOG411DZNJ OASA1,OASA2 P47998,Q9LJA0 CYSK1_ARATH,CYSK2_ARATH Cysteine synthase 1 (EC 2.5.1.47) (At.OAS.5-8) (Beta-substituted Ala synthase 1;1) (ARAth-Bsas1;1) (CSase A) (AtCS-A) (Cys-3A) (O-acetylserine (thiol)-lyase 1) (OAS-TL A) (O-acetylserine sulfhydrylase) (Protein ONSET OF LEAF DEATH 3),Putative inactive cysteine synthase 2 (Beta-substituted Ala synthase 1;2) (ARAth-Bsas1;2) (O-acetylserine (thiol)-lyase 4) DISRUPTION PHENOTYPE: No visible phenotype but displays lower levels of thiols in roots and leaves, and also an affected sulfur balance. Also shows an increased sensitivity to cadmium stress. {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:18223034, ECO:0000269|PubMed:20429919}. Seedling lethal-P. Dijkwel-2010 FUNCTION: Acts as a major cysteine synthase, probably involved in maintaining organic sulfur level. {ECO:0000269|PubMed:18024555, ECO:0000269|PubMed:18223034, ECO:0000269|PubMed:20429919}. PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 2/2. MetaCyc:AT4G14880-MONOMER;,ARA:AT3G22460-MONOMER; 2.5.1.47; 2.5.1.47 33805,19638 Cysteine synthase 1 (EC 2.5.1.47) (At.OAS.5-8) (Beta-substituted Ala synthase 1;1) (ARAth-Bsas1;1) (CSase A) (AtCS-A) (Cys-3A) (O-acetylserine (thiol)-lyase 1) (OAS-TL A) (O-acetylserine sulfhydrylase) (Protein ONSET OF LEAF DEATH 3),Putative inactive cysteine synthase 2 (Beta-substituted Ala synthase 1;2) (ARAth-Bsas1;2) (O-acetylserine (thiol)-lyase 4) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; cysteine synthase activity [GO:0004124]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; aging [GO:0007568]; cysteine biosynthetic process [GO:0019344]; cysteine biosynthetic process from serine [GO:0006535]; double fertilization forming a zygote and endosperm [GO:0009567]; pollen tube growth [GO:0009860]; response to cadmium ion [GO:0046686],cytoplasm [GO:0005737]; cysteine synthase activity [GO:0004124]; pyridoxal phosphate binding [GO:0030170]; transferase activity [GO:0016740]; cysteine biosynthetic process from serine [GO:0006535]; response to zinc ion [GO:0010043] locus:2130419;,locus:2077041; AT4G14880,AT3G22460 cysteine synthase Cysteine synthase (CSase) (EC 2.5.1.47) (O-acetylserine (thiol)-lyase) (OAS-TL) (O-acetylserine sulfhydrylase),Cysteine synthase (EC 2.5.1.47) (Fragment) Q9XEA8,Q9XEA6,A0A0P0YDB6 CYSK2_ORYSJ,CYSK1_ORYSJ,A0A0P0YDB6_ORYSJ RCS3 Os03g0747800 LOC_Os03g53650 OJ1124_H03.2 OSJNBa0069E14.1,RCS1 Os12g0625000 LOC_Os12g42980,Os12g0625000 OSNPB_120625000 ENOG411DZNE Q9M330,Q5XVJ3,F4JBP8 PSMF1_ARATH,Q5XVJ3_ARATH,F4JBP8_ARATH Probable proteasome inhibitor,Proteasome inhibitor-like protein FUNCTION: Could play an important role in control of proteasome function. Inhibits the hydrolysis of protein and peptide substrates by the 20S proteasome (By similarity). {ECO:0000250}. 32117,19390,26924 Probable proteasome inhibitor,Proteasome inhibitor-like protein endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; cellular response to auxin stimulus [GO:0071365]; negative regulation of proteasomal protein catabolic process [GO:1901799]; ubiquitin-dependent protein catabolic process [GO:0006511],proteasome complex [GO:0000502]; ubiquitin-dependent protein catabolic process [GO:0006511],proteasome complex [GO:0000502] locus:2084510;,locus:2198060; AT3G53970,AT1G48530 Proteasome Os07g0548900 protein (cDNA, clone: J075093E01, full insert sequence) B7F961 B7F961_ORYSJ Os07g0548900 OSNPB_070548900 ENOG411DZNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tyrosine phosphatase family Probable tyrosine-protein phosphatase DSP2 (EC 3.1.3.48) (Protein PLANT AND FUNGI ATYPICAL DUAL-SPECIFICITY PHOSPHATASE 2) (OsPFA-DSP2) Q0DX67 DSP2_ORYSJ DSP2 Os02g0771400 LOC_Os02g53160 FUNCTION: Probable tyrosine-protein phosphatase that acts as negative regulator of defense responses against the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:22514699}. MISCELLANEOUS: Plants overexpressing DSP2 exhibit increased sensitivity to infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:22514699}. ENOG411DZNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyl-CpG binding domain Os04g0266400 protein (cDNA clone:001-201-C01, full insert sequence) (cDNA clone:J013028E03, full insert sequence),Os04g0266400 protein,Os04g0192775 protein B7EB50,Q0JEI9,A0A0N7KIM4 B7EB50_ORYSJ,Q0JEI9_ORYSJ,A0A0N7KIM4_ORYSJ Os04g0266400 OSNPB_040266400,Os04g0266400 Os04g0266400 OSNPB_040266400,Os04g0192775 OSNPB_040192775 ENOG411DZNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic membrane protein family Os03g0715400 protein (cDNA clone:J033073E22, full insert sequence),Os03g0715332 protein (Fragment) Q0DP48,A0A0P0W2W7 Q0DP48_ORYSJ,A0A0P0W2W7_ORYSJ Os03g0715400 Os03g0715400 OSNPB_030715400,Os03g0715332 OSNPB_030715332 ENOG411DZNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-methyltransferase NA NA NA NA NA NA NA ENOG411DZN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like Nodulin family protein, putative, expressed (Os12g0637800 protein),Nodulin family protein, putative, expressed (Os12g0637700 protein) Q2QLL4,Q2QLL5 Q2QLL4_ORYSJ,Q2QLL5_ORYSJ LOC_Os12g44070 Os12g0637800 OSNPB_120637800,LOC_Os12g44060 Os12g0637700 OSNPB_120637700 ENOG411DZN9 WRKY22 O04609 WRK22_ARATH WRKY transcription factor 22 (WRKY DNA-binding protein 22) FUNCTION: Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. MISCELLANEOUS: Acts downstream a MAPK cascade and therefore might be regulated by phosphorylation. WRKY 22 and WRKY 29 may provide redundant functions. 32256 WRKY transcription factor 22 (WRKY DNA-binding protein 22) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; leaf senescence [GO:0010150]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2125043; AT4G01250 WRKY transcription factor Os02g0265200 protein (Putative WRKY transcription factor) (cDNA clone:J013074N21, full insert sequence),Os02g0265200 protein Q6ETY2,A0A0P0VHA7 Q6ETY2_ORYSJ,A0A0P0VHA7_ORYSJ P0006C08.18-1 Os02g0265200 OsJ_06167 OSNPB_020265200,Os02g0265200 OSNPB_020265200 ENOG411DZN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PDZ and LIM domain Os12g0596600 protein (Fragment) Q0IM59 Q0IM59_ORYSJ Os12g0596600 Os12g0596600 OSNPB_120596600 ENOG411DZN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SKP1-like protein Os03g0107000 protein A0A0P0VS32 A0A0P0VS32_ORYSJ Os03g0107000 OSNPB_030107000 ENOG411DZN0 Q8L936 CAP16_ARATH Putative clathrin assembly protein At4g40080 40702 Putative clathrin assembly protein At4g40080 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; phospholipid binding [GO:0005543]; endocytosis [GO:0006897] locus:2140084; AT4G40080 Clathrin assembly protein Os09g0468150 protein Q6K5E5 Q6K5E5_ORYSJ Os09g0468150 OSNPB_090468150 P0676H02.8 ENOG411DZN1 CIPK23 Q93VD3,A0A1P8ANQ5,A0A1P8ANR3 CIPKN_ARATH,A0A1P8ANQ5_ARATH,A0A1P8ANR3_ARATH CBL-interacting serine/threonine-protein kinase 23 (EC 2.7.11.1) (Protein LOW-K(+)-SENSITIVE 1) (SNF1-related kinase 3.23) (SOS2-like protein kinase PKS17),Non-specific serine/threonine protein kinase (EC 2.7.11.1) DISRUPTION PHENOTYPE: Plants exhibit an increased drought tolerance and an enhanced sensitivity to abscisic acid (ABA) during the stomatal regulation. {ECO:0000269|PubMed:17922773}. Enhanced drought tolerance. Hypersensitive to ABA inhibition of light-induced stomatal opening. Loss of function of CIPK23 alters the ABA responsiveness of guard cells during their opening and closure leading to reduced water loss under drought conditions. When grown on media containing low levels of KCl (micromolar range) cipk23 mutants displayed drastically reduced stature compared to the wild-type. In particular the roots of mutant plants were significantly shorter than those of wildtype plants. Resistant to drought-S. Luan-2007 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein leads to activation of the kinase in a calcium-dependent manner. Downstream of CBL1, CBL2, CBL3 and CBL9, regulates by phosphorylation the K(+) conductance and uptake of AKT1 in low K(+) condition, in response to calcium signaling and during the stomatal opening regulation by monitoring the turgor pressure in guard cells. In response to low nitrate concentration, phosphorylates NRT1.1, switching it from a low-affinity nitrate transporter to a high-affinity transporter. Confers tolerance to low potassium conditions. Involved in drought sensitivity and leaf transpiration. {ECO:0000269|PubMed:16814720, ECO:0000269|PubMed:16895985, ECO:0000269|PubMed:17898163, ECO:0000269|PubMed:17922773, ECO:0000269|PubMed:19766570, ECO:0000269|PubMed:22253446}. 2.7.11.1 53514,52413,42811 CBL-interacting serine/threonine-protein kinase 23 (EC 2.7.11.1) (Protein LOW-K(+)-SENSITIVE 1) (SNF1-related kinase 3.23) (SOS2-like protein kinase PKS17),Non-specific serine/threonine protein kinase (EC 2.7.11.1) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plastid [GO:0009536]; ATP binding [GO:0005524]; potassium channel activity [GO:0005267]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; potassium ion import [GO:0010107]; response to nutrient [GO:0007584]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transduction [GO:0007165] TISSUE SPECIFICITY: In seedlings, mostly in vascular bundles, and in roots, especially in cortex and endodermis cells. In adult plants, mostly expressed in flowers, and, to a lower extent, in roots, leaves, stems and siliques, particularly in vascular tissues. Also detected in guard cells and root hairs. {ECO:0000269|PubMed:16814720, ECO:0000269|PubMed:17922773}. locus:2009812; AT1G30270 Cbl-interacting protein kinase CBL-interacting protein kinase 23 (EC 2.7.11.1) (OsCIPK23) Q6ZLP5 CIPKN_ORYSJ CIPK23 Os07g0150700 LOC_Os07g05620 OJ1027_G06.32 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DZN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411EJD4 Q6NQH1 Q6NQH1_ARATH At1g70350 (Uncharacterized protein At1g70350) 10672 At1g70350 (Uncharacterized protein At1g70350) locus:2016184; AT1G70350 NA NA NA NA NA NA NA NA ENOG411EJDP DSS1(V),DSS1(I) Q9FL96,Q9XIR8,F4I886 SEM12_ARATH,SEM11_ARATH,F4I886_ARATH Protein DSS1 HOMOLOG ON CHROMOSOME V (AtDSS1(V)) (Probable 26S proteasome complex subunit sem1-2),Protein DELETION OF SUV3 SUPPRESSOR 1(I) (AtDSS1(I)) (Probable 26S proteasome complex subunit sem1-1),Deletion of SUV3 suppressor 1(I) FUNCTION: Subunit of the 26S proteasome which plays a role in ubiquitin-dependent proteolysis (By similarity). Associates also with the TREX-2 complex that is required for transcription-coupled mRNA export (PubMed:19843313). {ECO:0000250|UniProtKB:P60896, ECO:0000269|PubMed:19843313}.,FUNCTION: Subunit of the 26S proteasome which plays a role in ubiquitin-dependent proteolysis. {ECO:0000250|UniProtKB:P60896}. 8698,8859,13557 Protein DSS1 HOMOLOG ON CHROMOSOME V (AtDSS1(V)) (Probable 26S proteasome complex subunit sem1-2),Protein DELETION OF SUV3 SUPPRESSOR 1(I) (AtDSS1(I)) (Probable 26S proteasome complex subunit sem1-1),Deletion of SUV3 suppressor 1(I) proteasome regulatory particle, lid subcomplex [GO:0008541]; mRNA export from nucleus [GO:0006406]; proteasome assembly [GO:0043248] locus:2155392;,locus:2010851; AT5G45010,AT1G64750 DSS1/SEM1 family NA NA NA NA NA NA NA ENOG411EJDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50S ribosomal protein L35 NA NA NA NA NA NA NA ENOG411EJDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411EJDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L30p/L7e NA NA NA NA NA NA NA ENOG411EJDB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0259900 protein (Fragment) A0A0P0VHB7 A0A0P0VHB7_ORYSJ Os02g0259900 OSNPB_020259900 ENOG411EJDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411E0T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0T2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARM NA NA NA NA NA NA NA ENOG411E0T1 ABCB14,ABCB13 Q9C7F2,Q9C7F8,A0A1P8ATY7 AB14B_ARATH,AB13B_ARATH,A0A1P8ATY7_ARATH ABC transporter B family member 14 (ABC transporter ABCB.14) (AtABCB14) (Multidrug resistance protein 12) (P-glycoprotein 14),ABC transporter B family member 13 (ABC transporter ABCB.13) (AtABCB13) (P-glycoprotein 13) (Putative multidrug resistance protein 15),p-glycoprotein 13 Inflorescence stems from the homozygous mutants have smaller xylem vessels and smaller phloem areas compared to WT plants. Inflorescence apices also have a reduction in polar auxin transport. ARA:AT1G28010-MONOMER;,ARA:AT1G27940-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 136176,135776,112340 ABC transporter B family member 14 (ABC transporter ABCB.14) (AtABCB14) (Multidrug resistance protein 12) (P-glycoprotein 14),ABC transporter B family member 13 (ABC transporter ABCB.13) (AtABCB13) (P-glycoprotein 13) (Putative multidrug resistance protein 15),p-glycoprotein 13 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2010444;,locus:2010464; AT1G28010,AT1G27940 ABC transporter B family member NA NA NA NA NA NA NA ENOG411E0T0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os11g0226933 protein (Fragment),NBS-LRR type disease resistance protein, putative, expressed (Os11g0227800 protein) (cDNA clone:J033064L16, full insert sequence),Os04g0219600 protein (cDNA clone:J013118K22, full insert sequence),Os11g0226800 protein,Os11g0227700 protein,Os11g0227100 protein,Os11g0227400 protein,Os11g0228600 protein C7J895,Q2R8I7,Q0JEQ9,A0A0P0Y091,A0A0P0Y0I4,A0A0P0Y0E8,A0A0P0Y0I3,A0A0P0Y0R7 C7J895_ORYSJ,Q2R8I7_ORYSJ,Q0JEQ9_ORYSJ,A0A0P0Y091_ORYSJ,A0A0P0Y0I4_ORYSJ,A0A0P0Y0E8_ORYSJ,A0A0P0Y0I3_ORYSJ,A0A0P0Y0R7_ORYSJ Os11g0226933 OSNPB_110226933,LOC_Os11g12050 Os11g0227800 OSNPB_110227800,Os04g0219600 Os04g0219600 OSNPB_040219600,Os11g0226800 OSNPB_110226800,Os11g0227700 OSNPB_110227700,Os11g0227100 OSNPB_110227100,Os11g0227400 OSNPB_110227400,Os11g0228600 OSNPB_110228600 ENOG411E0T7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box and wd40 domain protein NA NA NA NA NA NA NA ENOG411E0T6 Q6DST3,Q8GYH0,A0A1P8AP24,A0A1P8AWU1,F4HYR0 Q6DST3_ARATH,Q8GYH0_ARATH,A0A1P8AP24_ARATH,A0A1P8AWU1_ARATH,F4HYR0_ARATH At1g62305 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At1g11940) (Uncharacterized protein At1g11940/F12F1_19),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 44205,44416,31489,37625,41404 At1g62305 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At1g11940) (Uncharacterized protein At1g11940/F12F1_19),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375] locus:504956294;,locus:2008890; AT1G62305,AT1G11940 Core-2/I-Branching enzyme Os01g0695200 protein Q5N9P7 Q5N9P7_ORYSJ Os01g0695200 Os01g0695200 OSNPB_010695200 P0431H09.29 ENOG411E0T5 Q9LVK6 Q9LVK6_ARATH DNA binding / DNA-directed RNA polymerase (Uncharacterized protein At3g13940) Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 50625 DNA binding / DNA-directed RNA polymerase (Uncharacterized protein At3g13940) DNA-directed RNA polymerase I complex [GO:0005736]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase I promoter [GO:0006360] locus:2088257; AT3G13940 RNA Polymerase Expressed protein (Os11g0615100 protein) (cDNA clone:J023014N04, full insert sequence) Q2R177 Q2R177_ORYSJ LOC_Os11g40090 Os11g0615100 OSNPB_110615100 ENOG411E0T4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q8L3W2 Q8L3W2_ORYSJ P0617C02.103 P0446F04.129 prx95 Os07g0104500 OsJ_22791 OSNPB_070104500 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411E0T9 ACA1 O04846 ATCA1_ARATH Alpha carbonic anhydrase 1, chloroplastic (AtaCA1) (AtalphaCA1) (EC 4.2.1.1) (Alpha carbonate dehydratase 1) FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000250}. ARA:AT3G52720-MONOMER; R-ATH-1237044;R-ATH-1247673;R-ATH-1475029; 4.2.1.1 32698 Alpha carbonic anhydrase 1, chloroplastic (AtaCA1) (AtalphaCA1) (EC 4.2.1.1) (Alpha carbonate dehydratase 1) chloroplast stroma [GO:0009570]; endoplasmic reticulum [GO:0005783]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; one-carbon metabolic process [GO:0006730] TISSUE SPECIFICITY: Strongly expressed in aerial tissues including leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17407539}. locus:2083213; AT3G52720 bifunctional monodehydroascorbate reductase and carbonic anhydrase Os04g0412500 protein (cDNA clone:001-029-D02, full insert sequence),Os02g0533300 protein (Putative nectarin III) (cDNA, clone: J065137F18, full insert sequence) B7E3S3,Q6EPY7 B7E3S3_ORYSJ,Q6EPY7_ORYSJ Os04g0412500 OsJ_14731 OSNPB_040412500,Os02g0533300 B1136H02.2 OsJ_07009 OSNPB_020533300 P0605D08.35 ENOG411E0T8 PCMP-E36 Q9STE1 PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 95741 Pentatricopeptide repeat-containing protein At4g21300 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2141171; AT4G21300 Pentatricopeptide repeat-containing protein Os03g0781100 protein A0A0P0W403 A0A0P0W403_ORYSJ Os03g0781100 OSNPB_030781100 ENOG411E0TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium/hydrogen exchanger family Os05g0473400 protein (Os05g0473401 protein) C7J264 C7J264_ORYSJ Os05g0473401 Os05g0473400 OSNPB_050473401 ENOG411E0TB Q6NQ80 Q6NQ80_ARATH At1g30860 (RING/U-box superfamily protein) (Uncharacterized protein At1g30860) 83022 At1g30860 (RING/U-box superfamily protein) (Uncharacterized protein At1g30860) cytoplasm [GO:0005737]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:2196954; AT1G30860 RING NA NA NA NA NA NA NA ENOG411E0TA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAM domain C2 domain-containing protein-like (Os06g0607900 protein) Q69V64 Q69V64_ORYSJ P0556B08.10 Os06g0607900 OSNPB_060607900 ENOG411E0TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0207200 protein (Fragment) A0A0P0Y882 A0A0P0Y882_ORYSJ Os12g0207200 OSNPB_120207200 ENOG411E0TF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dual specificity phosphatase catalytic domain Dual specificity phosphatase, catalytic domain containing protein, expressed (Os12g0152800 protein) (cDNA clone:J023105E11, full insert sequence) (cDNA clone:J023149P08, full insert sequence) (cDNA clone:J033044P20, full insert sequence) Q2QXL1 Q2QXL1_ORYSJ Os12g0152800 LOC_Os12g05660 OSNPB_120152800 ENOG411E0TE DUO1 A0A178VEK7 DUO1_ARATH Transcription factor DUO1 (Myb-related protein 125) (AtMYB125) (Protein DUO POLLEN 1) DISRUPTION PHENOTYPE: Loss of male fertility. Reduced expression of germline-specific genes (e.g. MGH3, GEX2 and GCS1) (PubMed:19300502). Blocked generative cell division resulting in the formation of bicellular pollen grains at anthesis. Pollen fails to enter mitosis at G2-M transition associated with reduced levels of CYCB1-1. Blocked generative cell division followed by endocycle during pollen maturation leads to single larger diploid sperm cell unable to perform fertilization (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:24876252). Enhanced polytubey (e.g. multiple pollen tubes entering ovules) (PubMed:22608506). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:22608506, ECO:0000269|PubMed:24876252}. Defect in sperm cell formation. Generative cell does not undergo mitosis. Produces a single larger diploid sperm cell that is unable to perform fertilization. Complete male gametophyte defective-D. Twell-2005 FUNCTION: Transcription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}. 34065 Transcription factor DUO1 (Myb-related protein 125) (AtMYB125) (Protein DUO POLLEN 1) generative cell nucleus [GO:0048555]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell cycle G2/M phase transition [GO:0044839]; generative cell mitosis [GO:0055047]; pollen sperm cell differentiation [GO:0048235]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Strict spatial and temporal transcriptional activation leading to a specific expression in the male germline cells; this specific expression pattern is dependent of the regulatory region of DUO1 (ROD1) 5'-YAACYGY-3' in its promoter (PubMed:15694308, PubMed:27624837). First observed in the germ cell during or soon after engulfment by the vegetative cell, just after asymmetric division. In maturating pollen, accumulates in germ cells before mitosis and remains high in mature sperm cells. Expression persists during pollen development (PubMed:19300502). {ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:27624837}. TISSUE SPECIFICITY: Confined to inflorescences, especially in stamens and pollen. {ECO:0000269|PubMed:15694308}. locus:2103386; AT3G60460 Transcription factor Probable transcription factor MYB58 (OsMYB58),Os06g0118150 protein (Fragment) Q0JB89,A0A0N7KLF4 MYB58_ORYSJ,A0A0N7KLF4_ORYSJ MYB58 Os04g0549500 LOC_Os04g46384 OsJ_15687 OSJNBa0065H10.16 OSJNBb0034G17.1,Os06g0118150 OSNPB_060118150 FUNCTION: Probable transcription factor. {ECO:0000305}. ENOG411E0TD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0665700 protein (cDNA clone:J013002P16, full insert sequence) Q0D3U2 Q0D3U2_ORYSJ Os07g0665700 Os07g0665700 OSNPB_070665700 ENOG411E0TK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 (Os12g0582700 protein) Q4U0D3 Q4U0D3_ORYSJ Os12g0582700 OSNPB_120582700 ENOG411E0TJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inorganic H+ pyrophosphatase H+-pyrophosphatase (Os01g0337500 protein),Os05g0156900 protein (Putative H+-pyrophosphatase (EC 3.6.1.1)) (cDNA clone:002-126-A04, full insert sequence) Q94CP2,Q75M03 Q94CP2_ORYSJ,Q75M03_ORYSJ Os01g0337500 Os01g0337500 OSNPB_010337500 P0487E11.31,Os05g0156900 Os05g0156900 OSNPB_050156900 P0676G05.9 ENOG411E0TI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1785 NA NA NA NA NA NA NA ENOG411E0TH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carbonic anhydrase NA NA NA NA NA NA NA ENOG411E0TN MMN10.1 Q8GY65,Q9FJF5,A0A1P8BAM1,A0A1I9LLA9,F4J7X6 Q8GY65_ARATH,Q9FJF5_ARATH,A0A1P8BAM1_ARATH,A0A1I9LLA9_ARATH,F4J7X6_ARATH At3g46110 (UPSTREAM OF FLC-like protein (DUF966)) (Uncharacterized protein At3g46110/F12M12_80),At5g59790 (Gb|AAC98451.1) (UPSTREAM OF FLC protein (DUF966)) (Uncharacterized protein At5g59790),UPSTREAM OF FLC protein (DUF966),UPSTREAM OF FLC-like protein (DUF966) 38927,47784,43692,31671,35432 At3g46110 (UPSTREAM OF FLC-like protein (DUF966)) (Uncharacterized protein At3g46110/F12M12_80),At5g59790 (Gb|AAC98451.1) (UPSTREAM OF FLC protein (DUF966)) (Uncharacterized protein At5g59790),UPSTREAM OF FLC protein (DUF966),UPSTREAM OF FLC-like protein (DUF966) plasma membrane [GO:0005886] locus:2075331;,locus:2168042; AT3G46110,AT5G59790 function DUF966 domain containing protein expressed Os01g0839200 protein (Putative auxin-regulated protein) Q943L5 Q943L5_ORYSJ Os01g0839200 OsJ_04017 OSNPB_010839200 P0031D11.28 P0408C03.3 ENOG411E0TM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411E0TS PCMP-E46 Q9LU94 PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970 78182 Putative pentatricopeptide repeat-containing protein At3g25970 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2092100; AT3G25970 Pentatricopeptide repeat-containing protein Os08g0375800 protein (Selenium-binding protein-like) (cDNA clone:J033030L22, full insert sequence) Q8GVW4 Q8GVW4_ORYSJ OJ1705_C03.103 Os08g0375800 OSNPB_080375800 P0436B06.29 ENOG411E0TR Q9FMY3 STPKL_ARATH Serine/threonine-protein kinase-like protein At5g23170 (EC 2.7.11.1) MISCELLANEOUS: This gene is linked with a growth rate QTL (quantitative trait locus). 2.7.11.1 38003 Serine/threonine-protein kinase-like protein At5g23170 (EC 2.7.11.1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Ubiquitous. Higher expression in mature stamina and pollen. {ECO:0000269|PubMed:15875023}. locus:2166761; AT5G23170 Serine threonine-protein kinase-like protein Os01g0267800 protein Q0JNS7 Q0JNS7_ORYSJ Os01g0267800 Os01g0267800 OSNPB_010267800 ENOG411E0TQ Q9M0R3,F4JJB2 Q9M0R3_ARATH,F4JJB2_ARATH T-complex protein 11 (Uncharacterized protein AT4g09150),T-complex protein 11 122903,122974 T-complex protein 11 (Uncharacterized protein AT4g09150),T-complex protein 11 locus:2122393; AT4G09150 T-complex protein 11 NA NA NA NA NA NA NA ENOG411E0TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Oryzalexin D synthase (EC 1.14.13.145) (EC 1.14.13.193) (Cytochrome P450 76M8) (Ent-cassadiene C11-alpha-hydroxylase 2),Ent-cassadiene C11-alpha-hydroxylase 1 (EC 1.14.13.145) (Cytochrome P450 76M7),Cytochrome P450 76M5 (EC 1.14.13.192),Oryzalexin E synthase (EC 1.14.13.192) (Cytochrome P450 76M6),Os02g0569900 protein (Putative Cyt-P450 monooxygenase) (cDNA clone:001-204-H06, full insert sequence),Os08g0465700 protein (Putative Cyt-P450 monooxygenase),Cyt-P450 monooxygenase (Os08g0507100 protein),Os08g0507400 protein (Os08g0507702 protein) (Putative Cyt-P450 monooxygenase) (cDNA clone:J013059L23, full insert sequence),Os06g0501900 protein (Putative Cyt-P450 monooxygenase),Geraniol 10-hydroxylase-like (Monooxygenase) (Os01g0561600 protein) (cDNA clone:J023025F12, full insert sequence),Cyt-P450 monooxygenase (Os08g0508000 protein) (cDNA clone:J033081G24, full insert sequence),Cytochrome P450 family protein (Os12g0199800 protein),Os08g0507000 protein (Fragment),Os02g0569400 protein (Fragment) Q6YTF1,Q69X58,Q6YTF5,Q6Z5I7,Q6YTE2,Q6YSB4,Q6Z3R2,Q6Z3D6,Q652X9,Q8LJD2,Q6Z3F0,Q2QWC8,A0A0P0XI45,A0A0P0VKN4 C76M8_ORYSJ,C76M7_ORYSJ,C76M5_ORYSJ,C76M6_ORYSJ,Q6YTE2_ORYSJ,Q6YSB4_ORYSJ,Q6Z3R2_ORYSJ,Q6Z3D6_ORYSJ,Q652X9_ORYSJ,Q8LJD2_ORYSJ,Q6Z3F0_ORYSJ,Q2QWC8_ORYSJ,A0A0P0XI45_ORYSJ,A0A0P0VKN4_ORYSJ CYP76M8 Os02g0569400 LOC_Os02g36070 OsJ_07203 OSJNBa0008E01.2 P0025F02.31,CYP76M7 Os06g0599200 LOC_Os06g39780 OsJ_07204 OsJ_21875 OSJNBa0008E01.17 P0025F02.46 P0642B07.53,CYP76M5 Os02g0569000 LOC_Os02g36030 OsJ_07201 P0025F02.20,CYP76M6 Os02g0571900 LOC_Os02g36280 OsJ_07213 P0689H05.39,Os02g0569900 OsJ_07204 OSJNBa0008E01.17 OSNPB_020569900 P0025F02.46,Os08g0465700 Os08g0465700 OsJ_27609 OSNPB_080465700 P0104B02.15,Os08g0507100 Os08g0507100 OsJ_27874 OSJNBa0025J22.47 OSJNBb0064I19.4 OSNPB_080507100,Os08g0507702 Os08g0507400 OSJNBb0064I19.10 OSNPB_080507702,Os06g0501900 Os06g0501900 OsJ_21466 OSJNBa0075M17.9 OSNPB_060501900 P0012H03.49,Os01g0561600 Os01g0561600 OsJ_02241 OSNPB_010561600 P0496H05.21,Os08g0508000 B1168A08.5 OSJNBb0064I19.17 OSNPB_080508000,LOC_Os12g09790 Os12g0199800 OsJ_12039 OSNPB_120199800,Os08g0507000 OSNPB_080507000,Os02g0569400 OSNPB_020569400 FUNCTION: Enzyme of the diterpenoid metabolism involved in the biosynthesis of both phytocassane and the oryzalexin class of phytoalexins. Can hydroxylate syn-pimaradiene, ent-pimaradiene, ent-sandaracopimaradiene, ent-isokaurene, ent-kaurene, and ent-cassadiene, but no activity with syn-stemodene, syn-stemarene, syn-labdatriene, C11-alpha-hydroxy-ent-cassadiene or syn-pimadien-19-oic acid as substrates. Hydroxylates 3-alpha-hydroxy-ent-sandaracopimaradiene at C-7-beta, resulting in a 3-alpha,7-beta-diol corresponding to oryzalexins D. {ECO:0000269|PubMed:21985968, ECO:0000269|PubMed:22215681, ECO:0000269|PubMed:23795884}.,FUNCTION: Enzyme of the diterpenoid metabolism involved in the biosynthesis of antibacterial oryzalides such as phytocassane. Can use ent-cassadiene as substrate, but not C11-alpha-hydroxy-ent-cassadiene, ent-pimaradiene, ent-sandaracopimaradiene, ent-kaurene, ent-isokaurene, syn-pimaradiene, syn-stemarene, syn-stemodene. {ECO:0000269|PubMed:19825834, ECO:0000269|PubMed:21985968, ECO:0000269|PubMed:22215681}.,FUNCTION: Enzyme of the diterpenoid metabolism involved in the biosynthesis of the oryzalexin class of phytoalexins. Hydroxylates ent-sandaracopimaradien. {ECO:0000269|PubMed:22215681}.,FUNCTION: Enzyme of the diterpenoid metabolism involved in the biosynthesis of the oryzalexin class of phytoalexins. Can use ent-sandaracopimaradien and syn-stemodene as substrates, but no activity with syn-stemoden-19-oic acid. Hydroxylates 3-alpha-hydroxy-ent-sandaracopimaradiene at C-9-beta, resulting in a 3-alpha,9-beta-diol corresponding to oryzalexins E. {ECO:0000269|PubMed:22215681, ECO:0000269|PubMed:23795884}. ENOG411E0TW DJA4 Q058J9 Q058J9_ARATH At3g17830 (Molecular chaperone Hsp40/DnaJ family protein) 57259 At3g17830 (Molecular chaperone Hsp40/DnaJ family protein) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to heat [GO:0009408] locus:2088585; AT3G17830 chaperone protein Expressed protein (Os03g0222800 protein),Expressed protein (Os03g0222700 protein) Q10PS9,Q10PT0 Q10PS9_ORYSJ,Q10PT0_ORYSJ Os03g0222800 LOC_Os03g12242 OSNPB_030222800,Os03g0222700 LOC_Os03g12236 OSNPB_030222700 ENOG411E0TV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myosin II heavy chain-like NA NA NA NA NA NA NA ENOG411E0TU TBL4 Q9FJ06 TBL4_ARATH Protein trichome birefringence-like 4 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 52302 Protein trichome birefringence-like 4 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2155874; AT5G49340 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411E0TT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0783800 protein (Putative serine/threonine kinase) Q5ZAV5 Q5ZAV5_ORYSJ Os01g0783800 Os01g0783800 B1100D10.43 OSNPB_010783800 ENOG411E0TZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411E0TY EMB1789 Q9LTS7 C3H65_ARATH Zinc finger CCCH domain-containing protein 65 (AtC3H65) (EC 3.1.-.-) (Protein EMBRYO DEFECTIVE 1789) Embryo defective; Globular-D. Meinke-2002 FUNCTION: Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. 3.1.-.- 73844 Zinc finger CCCH domain-containing protein 65 (AtC3H65) (EC 3.1.-.-) (Protein EMBRYO DEFECTIVE 1789) DNA binding [GO:0003677]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; RNA binding [GO:0003723] locus:2164660; AT5G56930 ZnF_C3H1 NA NA NA NA NA NA NA ENOG411E0TX MDC12.6 Q9FML3 Q9FML3_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 37004 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chloroplast [GO:0009507]; methyltransferase activity [GO:0008168] locus:2161997; AT5G63100 NA Os02g0489500 protein (cDNA clone:001-103-D03, full insert sequence) Q6K770 Q6K770_ORYSJ Os02g0489500 Os02g0489500 OsJ_06782 OSJNBa0048K16.3 OSNPB_020489500 P0483C08.43 ENOG411DS03 SIEL Q8VZA0,A0A1I9LPW8 SIEL_ARATH,A0A1I9LPW8_ARATH Protein SIEL (Protein SHORT-ROOT INTERACTING EMBRYONIC LETHAL),ARM repeat superfamily protein DISRUPTION PHENOTYPE: Embryonic lethal, when homozygous and no visible phenotype, when heterozygous. {ECO:0000269|PubMed:21924907}. FUNCTION: Intracellular shuttle that promotes movement of SHR from the stele into the endodermis (PubMed:21924907). Required for SHR association to endosomes and localization, and for intercellular movement of SHR (PubMed:25124761). {ECO:0000269|PubMed:25124761, ECO:0000303|PubMed:21924907}. MISCELLANEOUS: Hypomorphs (siel-3 and siel-4) have reduced movement of SHR and cause defects in root patterning (PubMed:21924907). Inhibition of microtubules results in mis-localization of SIEL (PubMed:23294290). {ECO:0000269|PubMed:21924907, ECO:0000269|PubMed:23294290}. 104017,73007 Protein SIEL (Protein SHORT-ROOT INTERACTING EMBRYONIC LETHAL),ARM repeat superfamily protein cell cortex [GO:0005938]; endosome [GO:0005768]; nucleus [GO:0005634]; intercellular transport [GO:0010496]; root radial pattern formation [GO:0090057]; snRNA 3'-end processing [GO:0034472] locus:2077848; AT3G08800 Inherit from KOG: integrator complex subunit 4 Os03g0281800 protein A0A0P0VWT0 A0A0P0VWT0_ORYSJ Os03g0281800 OSNPB_030281800 ENOG411DS02 PVA14,PVA12,PVA11,PVA31 Q9SYC9,Q9SHC8,Q8VZ95,O82213,A0A1P8AQB2,A0A1P8AQB3,F4I820,A0A1P8AQE6,A0A1P8B1Q1,A0A1P8AQC1,F4I818 VAP14_ARATH,VAP12_ARATH,VAP11_ARATH,VAP31_ARATH,A0A1P8AQB2_ARATH,A0A1P8AQB3_ARATH,F4I820_ARATH,A0A1P8AQE6_ARATH,A0A1P8B1Q1_ARATH,A0A1P8AQC1_ARATH,F4I818_ARATH Vesicle-associated protein 1-4 (Plant VAP homolog 14) (AtPVA14) (VAMP-associated protein 1-4),Vesicle-associated protein 1-2 (Plant VAP homolog 12) (AtPVA12) (VAMP-associated protein 1-2) [Cleaved into: Vesicle-associated protein 1-2, N-terminally processed],Vesicle-associated protein 1-1 (Plant VAP homolog 11) (AtPVA11) (VAMP-associated protein 1-1) (Vesicle-associated protein 27-1) [Cleaved into: Vesicle-associated protein 1-1, N-terminally processed],Vesicle-associated protein 3-1 (Plant VAP homolog 31) (AtPVA31) (VAMP-associated protein 3-1) [Cleaved into: Vesicle-associated protein 3-1, N-terminally processed],Vesicle-associated protein 1-4,Plant VAP homolog 12 FUNCTION: May play a role in vesicle trafficking. {ECO:0000250}.,FUNCTION: Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER. {ECO:0000269|PubMed:19207211}.,FUNCTION: Part of a membrane-cytoskeletal adapter complex that forms a bridge between the endoplasmic reticulum and the plasma membrane. Associates with microtubules. {ECO:0000269|PubMed:24909329}. R-ATH-6798695; 64407,26442,28473,17093,66473,40858,59578,41007,24595,53209,71930 Vesicle-associated protein 1-4 (Plant VAP homolog 14) (AtPVA14) (VAMP-associated protein 1-4),Vesicle-associated protein 1-2 (Plant VAP homolog 12) (AtPVA12) (VAMP-associated protein 1-2) [Cleaved into: Vesicle-associated protein 1-2, N-terminally processed],Vesicle-associated protein 1-1 (Plant VAP homolog 11) (AtPVA11) (VAMP-associated protein 1-1) (Vesicle-associated protein 27-1) [Cleaved into: Vesicle-associated protein 1-1, N-terminally processed],Vesicle-associated protein 3-1 (Plant VAP homolog 31) (AtPVA31) (VAMP-associated protein 3-1) [Cleaved into: Vesicle-associated protein 3-1, N-terminally processed],Vesicle-associated protein 1-4,Plant VAP homolog 12 signal transduction [GO:0007165],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein targeting [GO:0006605],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein storage vacuole [GO:0000326]; protein storage vacuole membrane [GO:0032586]; intracellular transport [GO:0046907]; viral process [GO:0016032],endoplasmic reticulum membrane [GO:0005789],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2055557;,locus:2101766;,locus:2061461;,locus:2008231; AT1G51270,AT2G45140,AT3G60600,AT2G23830 vesicle-associated protein Os08g0156700 protein (Putative vesicle-associated membrane protein-associated protein) (cDNA clone:J023062F08, full insert sequence),Os04g0534400 protein (cDNA clone:J023096L07, full insert sequence) Q6ZD98,Q0JBF7 Q6ZD98_ORYSJ,Q0JBF7_ORYSJ Os08g0156700 Os08g0156700 OsJ_26090 OSNPB_080156700 P0438H08.18,Os04g0534400 Os04g0534400 OsJ_15592 OSNPB_040534400 ENOG411DS01 Q9SKJ6,A0A1P8B0Z7 Q9SKJ6_ARATH,A0A1P8B0Z7_ARATH AFG1-like ATPase family protein (Uncharacterized protein At2g25530),AFG1-like ATPase family protein 75411,62331 AFG1-like ATPase family protein (Uncharacterized protein At2g25530),AFG1-like ATPase family protein ATP binding [GO:0005524] locus:2040050; AT2G25530 lactation elevated protein AFG1-like ATPase family protein, putative, expressed (Os03g0851900 protein),Os03g0851900 protein (Fragment) Q10AH7,A0A0P0W5P1 Q10AH7_ORYSJ,A0A0P0W5P1_ORYSJ Os03g0851900 LOC_Os03g63500 Os03g0851900 OsJ_13397 OSNPB_030851900,Os03g0851900 OSNPB_030851900 ENOG411DS00 Q6NMI3 Q6NMI3_ARATH At1g31780 (Oligomeric golgi complex subunit) (Uncharacterized protein At1g31780) R-ATH-6807878;R-ATH-6811438; 75792 At1g31780 (Oligomeric golgi complex subunit) (Uncharacterized protein At1g31780) cytosol [GO:0005829]; Golgi transport complex [GO:0017119]; intra-Golgi vesicle-mediated transport [GO:0006891] locus:2034506; AT1G31780 Conserved oligomeric Golgi complex subunit Os03g0225600 protein (Fragment) Q0DTU0 Q0DTU0_ORYSJ Os03g0225600 OSNPB_030225600 ENOG411DS07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os04g0535000 protein,Os01g0943800 protein (cDNA clone:J023028M23, full insert sequence),Os01g0943800 protein (cDNA clone:001-029-B04, full insert sequence),Os01g0942900 protein (cDNA, clone: J100054L12, full insert sequence),Os10g0102200 protein,Os07g0515700 protein (Fragment),Os02g0257950 protein,Os07g0515900 protein B9FGC2,B7EGS7,B7E3R6,B7FA83,A0A0P0XQP9,A0A0N7KNJ0,A0A0P0VH84,A0A0P0X6N9 B9FGC2_ORYSJ,B7EGS7_ORYSJ,B7E3R6_ORYSJ,B7FA83_ORYSJ,A0A0P0XQP9_ORYSJ,A0A0N7KNJ0_ORYSJ,A0A0P0VH84_ORYSJ,A0A0P0X6N9_ORYSJ Os04g0535000 OsJ_15595 OSNPB_040535000,Os01g0943800 OSNPB_010943800,Os01g0942900 OSNPB_010942900,Os10g0102200 OSNPB_100102200,Os07g0515700 OSNPB_070515700,Os02g0257950 OSNPB_020257950,Os07g0515900 OSNPB_070515900 ENOG411DS06 XYLT Q9LDH0 XYLT_ARATH Beta-(1,2)-xylosyltransferase (EC 2.4.2.38) FUNCTION: Catalyzes beta-1,2 glycosidic linkages. {ECO:0000269|PubMed:10781814}. PATHWAY: Protein modification; protein glycosylation. ARA:AT5G55500-MONOMER;MetaCyc:AT5G55500-MONOMER; 2.4.2.38; 2.4.2.38 60235 Beta-(1,2)-xylosyltransferase (EC 2.4.2.38) Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; Golgi medial cisterna [GO:0005797]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glycoprotein 2-beta-D-xylosyltransferase activity [GO:0050513]; xylosyltransferase activity [GO:0042285]; posttranslational protein targeting to membrane, translocation [GO:0031204]; protein N-linked glycosylation [GO:0006487] locus:2173892; AT5G55500 K03714 glycoprotein 2-beta-D-xylosyltransferase EC 2.4.2.38 Os08g0503800 protein (Putative beta 1,2-xylosyltransferase),Os09g0257233 protein Q6ZFH6,A0A0P0XK53 Q6ZFH6_ORYSJ,A0A0P0XK53_ORYSJ Os08g0503800 OJ1506_F01.30 OSNPB_080503800,Os09g0257233 OSNPB_090257233 ENOG411DS05 F4HWL4,Q8S9J2,A0A1P8ANP3 SYYC2_ARATH,SYYC1_ARATH,A0A1P8ANP3_ARATH Tyrosine--tRNA ligase 2, cytoplasmic (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS),Tyrosine--tRNA ligase 1, cytoplasmic (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS),Nucleotidylyl transferase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:16297076}. FUNCTION: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). {ECO:0000250|UniProtKB:Q9Y2Z4}. ARA:AT2G33840-MONOMER; 6.1.1.1 84717,43898,77530 Tyrosine--tRNA ligase 2, cytoplasmic (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS),Tyrosine--tRNA ligase 1, cytoplasmic (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS),Nucleotidylyl transferase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; tyrosine-tRNA ligase activity [GO:0004831]; valine-tRNA ligase activity [GO:0004832]; valyl-tRNA aminoacylation [GO:0006438],aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; transferase activity [GO:0016740]; tRNA aminoacylation for protein translation [GO:0006418] locus:2032164;,locus:2057599; AT1G28350,AT2G33840 tyrosyl-tRNA synthetase Os08g0150800 protein (Putative tyrosyl-tRNA synthetase),Os08g0191800 protein,Os08g0320000 protein Q84PX0,A0A0P0XCU4,A0A0P0XEB2 Q84PX0_ORYSJ,A0A0P0XCU4_ORYSJ,A0A0P0XEB2_ORYSJ P0443G08.126 Os08g0150800 OsJ_26046 OSNPB_080150800,Os08g0191800 OSNPB_080191800,Os08g0320000 OSNPB_080320000 ENOG411DS04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain containing protein Os11g0212900 protein (Fragment),Os11g0213000 protein,Os11g0212300 protein Q0ITV9,A0A0P0Y0M9,A0A0P0XZY4 Q0ITV9_ORYSJ,A0A0P0Y0M9_ORYSJ,A0A0P0XZY4_ORYSJ Os11g0212900 Os11g0212900 OSNPB_110212900,Os11g0213000 OSNPB_110213000,Os11g0212300 OSNPB_110212300 ENOG411DS09 ACC1,ACC2 Q38970,F4I1L3,A0A1P8ANX0,B3H4A7 ACC1_ARATH,ACC2_ARATH,A0A1P8ANX0_ARATH,B3H4A7_ARATH Acetyl-CoA carboxylase 1 (AtACC1) (EC 6.4.1.2) (Protein EMBRYO DEFECTIVE 22) (Protein GURKE) (Protein PASTICCINO 3) [Includes: Biotin carboxylase (EC 6.3.4.14)],Acetyl-CoA carboxylase 2 (EC 6.4.1.2) [Includes: Biotin carboxylase (EC 6.3.4.14)],Acetyl-CoA carboxylase 2 DISRUPTION PHENOTYPE: Embryo lethal with an arrest in development at the late globular stage in acc1-1 and acc1-2 null allele mutants. In the leaky pas3 and gk alleles, defect in embryo development, very short and thick hypocotyl and misshaped cotyledons that do not expand. Abnormal root development, abnormal fused leaves and compact rosettes with multiple shoots. Uncoordinated cell divisions in the apical region. Reduced levels of very long chain fatty acids in seeds. {ECO:0000269|PubMed:12943542, ECO:0000269|PubMed:15088065, ECO:0000269|PubMed:15509834, ECO:0000269|PubMed:9011083, ECO:0000269|PubMed:9449673}. Heterozygous plants appear normal except for the production of some severely wrinkled seeds. The altered seed phenotype is visible during silique maturation as white seeds amongst green ones. The dessicated wrinkled seeds are unable to germinate after imbibition (embryo lethal).,Mutant embryos exhibit wildtype-like staining patterns for most of the activities analysed: 6PGDH GK PGM PGI and ADH. But slight increase in G6DPH staining at 12 days after fertilization.,embryo lethal. Embryo defective; Gametophyte defective (inferred)-C. Rochat; J.D. Faure-2003 FUNCTION: Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Required for very long chain fatty acids elongation. Necessary for embryo and plant development. Plays a central function in embryo morphogenesis, especially in apical meristem development. Involved in cell proliferation and tissue patterning. May act as a repressor of cytokinin response. {ECO:0000269|PubMed:12943542, ECO:0000269|PubMed:15088065, ECO:0000269|PubMed:15509834, ECO:0000269|PubMed:20145257, ECO:0000269|PubMed:9008389, ECO:0000269|PubMed:9449673}.,FUNCTION: Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. {ECO:0000250|UniProtKB:Q38970}. MISCELLANEOUS: The acc1-1 and pas3-1 mutants can be partially complemented by exogenous supply of malonate. PATHWAY: Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1. ARA:AT1G36160-MONOMER; R-ATH-163765;R-ATH-196780;R-ATH-200425;R-ATH-75105; 6.4.1.2; 6.4.1.2; 6.3.4.14 251382,262729,46858,46578 Acetyl-CoA carboxylase 1 (AtACC1) (EC 6.4.1.2) (Protein EMBRYO DEFECTIVE 22) (Protein GURKE) (Protein PASTICCINO 3) [Includes: Biotin carboxylase (EC 6.3.4.14)],Acetyl-CoA carboxylase 2 (EC 6.4.1.2) [Includes: Biotin carboxylase (EC 6.3.4.14)],Acetyl-CoA carboxylase 2 cytosol [GO:0005829]; plasma membrane [GO:0005886]; acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; metal ion binding [GO:0046872]; embryo development ending in seed dormancy [GO:0009793]; fatty acid elongation [GO:0030497]; malonyl-CoA biosynthetic process [GO:2001295]; meristem structural organization [GO:0009933]; primary shoot apical meristem specification [GO:0010072]; response to cytokinin [GO:0009735]; root development [GO:0048364]; shoot system development [GO:0048367],cytosol [GO:0005829]; acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; metal ion binding [GO:0046872]; fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295],ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075] DEVELOPMENTAL STAGE: Expressed in flower buds at stage 6 of development in tapetal cells and at stage 10 in the epidermal cells of growing petals and ovaries. In young siliques, expressed transiently in the inner integument of the ovules just prior to testal deposition. {ECO:0000269|PubMed:12376641}. TISSUE SPECIFICITY: Expressed in roots, trichomes, epidermal leaf cells, siliques, petals, anthers, and seeds. {ECO:0000269|PubMed:12376641, ECO:0000269|PubMed:12943542, ECO:0000269|PubMed:7551584, ECO:0000269|PubMed:7915036}.,TISSUE SPECIFICITY: Widely expressed at low levels. {ECO:0000269|PubMed:12943542, ECO:0000269|PubMed:7551584}. locus:2034310;,locus:2013190; AT1G36160,AT1G36180 acetyl-coa carboxylase Acetyl-CoA carboxylase 1 (EC 6.4.1.2) [Includes: Biotin carboxylase (EC 6.3.4.14)],Acetyl-CoA carboxylase 2 (EC 6.4.1.2) [Includes: Biotin carboxylase (EC 6.3.4.14)],Os10g0363300 protein (Fragment),Os05g0295300 protein (Fragment) Q8S6N5,B9FK36,A0A0P0XT84,A0A0N7KKG9 ACC1_ORYSJ,ACC2_ORYSJ,A0A0P0XT84_ORYSJ,A0A0N7KKG9_ORYSJ ACC1 Os10g0363300 LOC_Os10g21910 OsJ_31236 OSJNBa0073L01.2,ACC2 Os05g0295300 LOC_Os05g22940 OsJ_17935,Os10g0363300 OSNPB_100363300,Os05g0295300 OSNPB_050295300 FUNCTION: Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. {ECO:0000250|UniProtKB:Q38970}.,FUNCTION: Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. {ECO:0000250|UniProtKB:O04983}. ENOG411DS08 F4ISN0,Q9SL90,A0A1P8B1I9 F4ISN0_ARATH,Q9SL90_ARATH,A0A1P8B1I9_ARATH Zinc finger FYVE domain protein,Uncharacterized protein At2g25730 (Zinc finger FYVE domain protein) 277296,274773,275672 Zinc finger FYVE domain protein,Uncharacterized protein At2g25730 (Zinc finger FYVE domain protein) locus:2050317; AT2G25730 Inherit from KOG: Zinc finger FYVE domain containing 26 Os01g0593000 protein (Fragment) A0A0P0V4Q8 A0A0P0V4Q8_ORYSJ Os01g0593000 OSNPB_010593000 ENOG411DS0S MXI22.14 Q84WU0,Q9FK30,Q501D6,F4HTC2 Q84WU0_ARATH,Q9FK30_ARATH,Q501D6_ARATH,F4HTC2_ARATH Glycosyltransferase (O-fucosyltransferase family protein) (Uncharacterized protein At1g17270),At5g50420 (Glycosyltransferase) (O-fucosyltransferase family protein),At1g53770 (Glycosyltransferase) (O-fucosyltransferase family protein),O-fucosyltransferase family protein 63622,64411,63943,68317 Glycosyltransferase (O-fucosyltransferase family protein) (Uncharacterized protein At1g17270),At5g50420 (Glycosyltransferase) (O-fucosyltransferase family protein),At1g53770 (Glycosyltransferase) (O-fucosyltransferase family protein),O-fucosyltransferase family protein integral component of membrane [GO:0016021]; peptide-O-fucosyltransferase activity [GO:0046922],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; peptide-O-fucosyltransferase activity [GO:0046922] locus:2020432;,locus:2177492;,locus:2024807; AT1G17270,AT5G50420,AT1G53770 GDP-fucose protein O-fucosyltransferase Os07g0572600 protein (Putative GDP-fucose protein-O-fucosyltransferase 2) Q6ZL29 Q6ZL29_ORYSJ Os07g0572600 Os07g0572600 OJ1121_A05.28 OJ1699_E05.4 OsJ_24820 OSNPB_070572600 ENOG411DS0R RPS13A,RPS13B P59223,P59224 RS131_ARATH,RS132_ARATH 40S ribosomal protein S13-1,40S ribosomal protein S13-2 Narrow, pointed first true leaves; Short roots; Decreased density and abnormal branching of trichomes; Late flowering under continuous light-K. Shinozaki-2000 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 17095,17085 40S ribosomal protein S13-1,40S ribosomal protein S13-2 cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; nucleolus [GO:0005730]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; cytokinesis by cell plate formation [GO:0000911]; leaf morphogenesis [GO:0009965]; mature ribosome assembly [GO:0042256]; translation [GO:0006412]; trichome morphogenesis [GO:0010090] locus:2101901;,locus:2126936; AT3G60770,AT4G00100 ribosomal protein 40S ribosomal protein S13-1,40S ribosomal protein S13-2,Os07g0572900 protein (Putative 40S RIBOSOMAL PROTEIN S13) (cDNA clone:001-110-A09, full insert sequence),Os08g0117200 protein (Fragment),Os02g0677800 protein (Fragment) Q69UI2,Q69UI1,Q6ZL24,A0A0P0XAY7,A0A0N7KFV6 RS131_ORYSJ,RS132_ORYSJ,Q6ZL24_ORYSJ,A0A0P0XAY7_ORYSJ,A0A0N7KFV6_ORYSJ Os08g0117200 LOC_Os08g02400 P0470F10.17,Os08g0117300 LOC_Os08g02410 OsJ_25831 P0470F10.18,Os07g0572900 OJ1699_E05.12 OsJ_24822 OSNPB_070572900,Os08g0117200 OSNPB_080117200,Os02g0677800 OSNPB_020677800 ENOG411DS0Q F24B22.60,AT5G35570.1 Q9SH89,Q9M393,Q94BY4 Q9SH89_ARATH,Q9M393_ARATH,Q94BY4_ARATH O-fucosyltransferase family protein (Putative axi 1 protein from Nicotiana tabacum),O-fucosyltransferase family protein (Uncharacterized protein F24B22.60),AT5g35570/K2K18_1 (O-fucosyltransferase family protein) 72660,72907,72910 O-fucosyltransferase family protein (Putative axi 1 protein from Nicotiana tabacum),O-fucosyltransferase family protein (Uncharacterized protein F24B22.60),AT5g35570/K2K18_1 (O-fucosyltransferase family protein) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2065563;,locus:2080285;,locus:2157096; AT2G37980,AT3G54100,AT5G35570 DUF246 domain-containing protein Os05g0451900 protein,Os09g0442900 protein (Putative auxin-independent growth promoter),Os01g0851100 protein (Fragment),Os01g0851100 protein Q0DHQ1,Q67UT6,A0A0P0VAH3,A0A0N7KE27 Q0DHQ1_ORYSJ,Q67UT6_ORYSJ,A0A0P0VAH3_ORYSJ,A0A0N7KE27_ORYSJ Os05g0451900 Os05g0451900 OSNPB_050451900,Os09g0442900 Os09g0442900 OsJ_29537 OSNPB_090442900 P0046G12.29,Os01g0851100 OSNPB_010851100 ENOG411DS0P XK-1 Q8L794,Q67XN5,A0A1P8AX79,A0A1P8AXD5 Q8L794_ARATH,Q67XN5_ARATH,A0A1P8AX79_ARATH,A0A1P8AXD5_ARATH Putative xylulose kinase (Xylulose kinase like protein) (Xylulose kinase-1),Xylulose kinase like protein (Xylulose kinase-1),Xylulose kinase-1 FUNCTION: Exhibits ATP hydrolysis without substrate. Can phosphorylate D-ribulose with low efficiency. {ECO:0000269|PubMed:27223615}. 52468,41731,34715,45451 Putative xylulose kinase (Xylulose kinase like protein) (Xylulose kinase-1),Xylulose kinase like protein (Xylulose kinase-1),Xylulose kinase-1 chloroplast [GO:0009507]; cytoplasm [GO:0005737]; plastid [GO:0009536]; kinase activity [GO:0016301]; nucleotide binding [GO:0000166]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; carbohydrate metabolic process [GO:0005975]; phosphorylation [GO:0016310],kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; carbohydrate metabolic process [GO:0005975] locus:2050029; AT2G21370 FGGY family of carbohydrate kinases C-terminal domain Os07g0409200 protein (Fragment) A0A0N7KNB0 A0A0N7KNB0_ORYSJ Os07g0409200 OSNPB_070409200 ENOG411DS0W PCMP-E20 Q9FNN7 PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 58038 Pentatricopeptide repeat-containing protein At5g08510 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2159602; AT5G08510 Pentatricopeptide repeat-containing protein Os06g0125600 protein A0A0P0WS99 A0A0P0WS99_ORYSJ Os06g0125600 OSNPB_060125600 ENOG411DS0V PCKA,PCK2 Q9T074,B5X574,A0A1P8BDT8,A0A1P8BDX2 PCKA_ARATH,B5X574_ARATH,A0A1P8BDT8_ARATH,A0A1P8BDX2_ARATH Phosphoenolpyruvate carboxykinase (ATP) (PEP carboxykinase) (PEPCK) (EC 4.1.1.49),At5g65690 (Phosphoenolpyruvate carboxykinase 2),Phosphoenolpyruvate carboxykinase 2 PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. MetaCyc:AT4G37870-MONOMER; 4.1.1.49 73405,72892,76562,62897 Phosphoenolpyruvate carboxykinase (ATP) (PEP carboxykinase) (PEPCK) (EC 4.1.1.49),At5g65690 (Phosphoenolpyruvate carboxykinase 2),Phosphoenolpyruvate carboxykinase 2 cytosol [GO:0005829]; membrane [GO:0016020]; nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; phosphoenolpyruvate carboxykinase (ATP) activity [GO:0004612]; cellular response to phosphate starvation [GO:0016036]; defense response to fungus, incompatible interaction [GO:0009817]; gluconeogenesis [GO:0006094]; response to cadmium ion [GO:0046686],cytosol [GO:0005829]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphoenolpyruvate carboxykinase (ATP) activity [GO:0004612]; gluconeogenesis [GO:0006094],ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphoenolpyruvate carboxykinase (ATP) activity [GO:0004612]; gluconeogenesis [GO:0006094] locus:2137594;,locus:504954890; AT4G37870,AT5G65690 phosphoenolpyruvate carboxykinase Os10g0204400 protein (Phosphoenolpyruvate carboxykinase, putative, expressed),Os03g0255500 protein (Phosphoenolpyruvate carboxykinase, putative, expressed) (cDNA clone:J033092F07, full insert sequence),Os03g0255500 protein Q7G466,Q10NX2,A0A0P0VVL1 Q7G466_ORYSJ,Q10NX2_ORYSJ,A0A0P0VVL1_ORYSJ Os10g0204400 LOC_Os10g13700 Os10g0204400 OSNPB_100204400,LOC_Os03g15050 Os03g0255500 OSNPB_030255500,Os03g0255500 OSNPB_030255500 ENOG411DS0U Q84TL5,Q8LD89,Q9SKP4,A0A1P8ANJ0,A0A1P8ANJ6,A0A1P8AWL9,F4HR00 Q84TL5_ARATH,Q8LD89_ARATH,Q9SKP4_ARATH,A0A1P8ANJ0_ARATH,A0A1P8ANJ6_ARATH,A0A1P8AWL9_ARATH,F4HR00_ARATH At1g75760 (ER lumen protein retaining receptor family protein) (Putative ER lumen protein retaining receptor),ER lumen protein retaining receptor family protein (Putative ER lumen protein retaining receptor) (Uncharacterized protein At4g38791),ER lumen protein retaining receptor family protein (Putative ER lumen protein retaining receptor),ER lumen protein retaining receptor family protein 30696,30814,30441,25736,29244,27273,30902 At1g75760 (ER lumen protein retaining receptor family protein) (Putative ER lumen protein retaining receptor),ER lumen protein retaining receptor family protein (Putative ER lumen protein retaining receptor) (Uncharacterized protein At4g38791),ER lumen protein retaining receptor family protein (Putative ER lumen protein retaining receptor),ER lumen protein retaining receptor family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ER retention sequence binding [GO:0046923]; protein retention in ER lumen [GO:0006621] locus:2005619;,locus:2141796;,locus:2047052;,locus:2198601; AT1G75760,AT4G38790,AT2G21190,AT1G19970 ER lumen protein retaining ER lumen protein-retaining receptor-like (Os09g0534200 protein),Os08g0548200 protein (Putative ER lumen protein-retaining receptor) (cDNA clone:006-205-G07, full insert sequence) (cDNA clone:006-304-F02, full insert sequence) (cDNA clone:J033099F17, full insert sequence) Q69SG3,Q6YT06 Q69SG3_ORYSJ,Q6YT06_ORYSJ OJ1112_E07.19 Os09g0534200 OSNPB_090534200,Os08g0548200 Os08g0548200 OJ1112_E06.15 OSNPB_080548200 P0544G09.31 ENOG411DS0T O48523,O64877,F4J4L9,A0A1I9LTJ3 O48523_ARATH,O64877_ARATH,F4J4L9_ARATH,A0A1I9LTJ3_ARATH DNA-binding bromodomain-containing protein (Uncharacterized protein At2g42150),At2g44430 (DNA-binding bromodomain-containing protein) (Uncharacterized protein At2g44430),DNA-binding bromodomain-containing protein 70446,72405,72311,72552 DNA-binding bromodomain-containing protein (Uncharacterized protein At2g42150),At2g44430 (DNA-binding bromodomain-containing protein) (Uncharacterized protein At2g44430),DNA-binding bromodomain-containing protein DNA binding [GO:0003677] locus:2060040;,locus:2050574; AT2G42150,AT2G44430,AT3G57980 DNA-binding bromodomain-containing protein Os08g0510700 protein,DNA-binding protein family-like (MYB-related transcription factor) (Os08g0510700 protein) Q7EXY8,Q84YJ6 Q7EXY8_ORYSJ,Q84YJ6_ORYSJ OSJNBa0016N23.124-2 Os08g0510700 OSNPB_080510700,OSJNBa0016N23.124-1 Os08g0510700 OSNPB_080510700 ENOG411DS0Z Q8GWB3,F4K4B8 Q8GWB3_ARATH,F4K4B8_ARATH Protein YIPF 30746,31162 Protein YIPF cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; Rab GTPase binding [GO:0017137],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; Rab GTPase binding [GO:0017137] locus:2096324;,locus:2146435; AT3G05280,AT5G27490 Integral membrane Yip1 family protein Protein YIPF,Protein YIPF (Fragment) Q9AX74,A0A0P0V542 Q9AX74_ORYSJ,A0A0P0V542_ORYSJ Os01g0610500 OsJ_02571 OSNPB_010610500 P0410E03.24,Os01g0610500 OSNPB_010610500 ENOG411DS0X Q84JF2,A0A1P8AU33 Q84JF2_ARATH,A0A1P8AU33_ARATH Class I peptide chain release factor (Uncharacterized protein At1g62855),Class I peptide chain release factor ARA:GQT-2036-MONOMER; 26072,22710 Class I peptide chain release factor (Uncharacterized protein At1g62855),Class I peptide chain release factor mitochondrial large ribosomal subunit [GO:0005762]; aminoacyl-tRNA hydrolase activity [GO:0004045]; translation release factor activity, codon nonspecific [GO:0016150]; mitochondrial translational termination [GO:0070126]; rescue of stalled ribosome [GO:0072344],translation release factor activity [GO:0003747] locus:2026217; AT1G62850 peptidyl-tRNA hydrolase ICT1 Immature colon carcinoma transcript 1 protein, putative, expressed (Os03g0249200 protein) (cDNA clone:J023035H14, full insert sequence) Q10P29 Q10P29_ORYSJ LOC_Os03g14510 Os03g0249200 OSNPB_030249200 ENOG411DS0B MUS81,MKM21.10 Q5W9E7,F4KFU8 MUS81_ARATH,F4KFU8_ARATH Crossover junction endonuclease MUS81 (EC 3.1.22.-) (Protein MMS AND UV SENSITIVE 81) (AtMUS81),Restriction endonuclease, type II-like superfamily protein DISRUPTION PHENOTYPE: Sensitive to the mutagens MMS and MMC. Increased sensitivity to gamma radiation. Deficiency in homologous recombination in somatic cells but only after induction by genotoxic stress. Decreased pollen viability with morphologically aberrant (small and misshaped) grain. Moderate reduction in meiotic crossovers. {ECO:0000269|PubMed:17696612, ECO:0000269|PubMed:18182028}. Deficiency in homologous recombination in somatic cells but only after induction by genotoxic stress. Sensitive to genotoxic stress-H. Puchta-2006 FUNCTION: Interacts with EME1 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, D-loops, replication forks, nicked Holliday junctions and also intact Holliday junctions with a reduced efficiency. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. Plays a role in DNA repair and in genotoxic stress-induced homologous recombination (HR) in somatic cells. Mediates a subset of meiotic recombination events that are insensitive to crossover interference. {ECO:0000269|PubMed:16945961, ECO:0000269|PubMed:17696612, ECO:0000269|PubMed:18182028, ECO:0000269|PubMed:19339504, ECO:0000269|PubMed:20971895}. MISCELLANEOUS: Two distinct classes of crossovers have been demonstrated in Arabidopsis. Class I is MSH4 dependent and exhibits crossover interference. Class II is MUS81 dependent and exhibits no interference. 3.1.22.- 74056,140539 Crossover junction endonuclease MUS81 (EC 3.1.22.-) (Protein MMS AND UV SENSITIVE 81) (AtMUS81),Restriction endonuclease, type II-like superfamily protein condensed nuclear chromosome [GO:0000794]; Holliday junction resolvase complex [GO:0048476]; nucleolus [GO:0005730]; 3'-flap endonuclease activity [GO:0048257]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; cell division [GO:0051301]; cellular response to DNA damage stimulus [GO:0006974]; chiasma assembly [GO:0051026]; DNA repair [GO:0006281]; double-strand break repair via break-induced replication [GO:0000727]; double-strand break repair via homologous recombination [GO:0000724]; intra-S DNA damage checkpoint [GO:0031573]; mitotic G2 DNA damage checkpoint [GO:0007095]; mitotic recombination [GO:0006312]; replication fork processing [GO:0031297]; resolution of meiotic recombination intermediates [GO:0000712],Holliday junction resolvase complex [GO:0048476]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; 3'-flap endonuclease activity [GO:0048257]; DNA binding [GO:0003677]; double-strand break repair via break-induced replication [GO:0000727]; intra-S DNA damage checkpoint [GO:0031573]; mitotic G2 DNA damage checkpoint [GO:0007095]; replication fork processing [GO:0031297]; resolution of meiotic recombination intermediates [GO:0000712] TISSUE SPECIFICITY: Ubiquitous but preferentially expressed in young flowers buds, notably in anthers. {ECO:0000269|PubMed:17696612, ECO:0000269|PubMed:18182028}. locus:2126729;,locus:2167057; AT4G30870,AT5G39770 crossover junction endonuclease Crossover junction endonuclease MUS81 (EC 3.1.22.-) (Protein MMS AND UV SENSITIVE 81) (OsMUS81) Q8GT06 MUS81_ORYSJ MUS81 Os01g0948100 LOC_Os01g71960 OsJ_04752 P0466H10.31 FUNCTION: Interacts with EME1 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, D-loops, replication forks, nicked Holliday junctions and also intact Holliday junctions with a reduced efficiency. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. Plays a role in DNA repair and in genotoxic stress-induced homologous recombination (HR) in somatic cells. Mediates a subset of meiotic recombination events that are insensitive to crossover interference (By similarity). {ECO:0000250}. ENOG411DS0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Os01g0921100 protein A0A0N7KEB3 A0A0N7KEB3_ORYSJ Os01g0921100 OSNPB_010921100 ENOG411DS0G HCF244 O65502 O65502_ARATH AT4g35250/F23E12_190 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein AT4g35250) (Uncharacterized protein F23E12.190) 43723 AT4g35250/F23E12_190 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein AT4g35250) (Uncharacterized protein F23E12.190) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; translation initiation factor activity [GO:0003743]; photosystem II assembly [GO:0010207] locus:2122083; AT4G35250 NmrA-like family Os08g0553800 protein (Putative NADPH-dependent reductase) (cDNA clone:001-204-F05, full insert sequence) (cDNA clone:006-206-B01, full insert sequence) (cDNA clone:J013039H05, full insert sequence) (cDNA clone:J013073F17, full insert sequence) Q6Z3F9 Q6Z3F9_ORYSJ Os08g0553800 OJ1125_C01.13-1 Os08g0553800 OSJNBb0011H15.39-1 OSNPB_080553800 ENOG411DS0F Q9LSK8 PP240_ARATH Pentatricopeptide repeat-containing protein At3g18020 77974 Pentatricopeptide repeat-containing protein At3g18020 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2087664; AT3G18020 Pentatricopeptide repeat-containing protein Os07g0674300 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6YSW9 Q6YSW9_ORYSJ P0618H09.2 Os07g0674300 OsJ_25552 OSNPB_070674300 P0037D09.4 ENOG411DS0E SAP18 O64644,F4IG85 SAP18_ARATH,F4IG85_ARATH Histone deacetylase complex subunit SAP18 (18 kDa Sin3-associated polypeptide),SIN3 associated polypeptide P18 DISRUPTION PHENOTYPE: Plants are hypersensitive to salt. {ECO:0000269|PubMed:16429262}. FUNCTION: Links the histone deacetylase complex to transcriptional repressors bound to chromatin. Involved in the tethering of the SIN3 complex to core histone proteins. {ECO:0000269|PubMed:16429262}. 17164,16780 Histone deacetylase complex subunit SAP18 (18 kDa Sin3-associated polypeptide),SIN3 associated polypeptide P18 nucleolus [GO:0005730]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous, with low level in flowers. {ECO:0000269|PubMed:16429262}. locus:2043704; AT2G45640 histone deacetylase complex Histone deacetylase complex subunit SAP18 Q6ZH90 Q6ZH90_ORYSJ Os02g0122000 Os02g0122000 OJ1020_C02.26 OsJ_05174 OSNPB_020122000 FUNCTION: Involved in the tethering of the SIN3 complex to core histone proteins. {ECO:0000256|PIRNR:PIRNR037637}. ENOG411DS0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Metal-nicotianamine transporter YSL2 (Protein YELLOW STRIPE LIKE 2) (OsYSL2) Q6H3Z6 YSL2_ORYSJ YSL2 Os02g0649900 LOC_Os02g43370 OSJNBb0012J10.2 P0048B08.26 FUNCTION: Involved in the phloem transport of iron and manganese and their translocation into the grain. Transports iron- and manganese-nicotianamine chelates, but not iron-phytosiderophore. {ECO:0000269|PubMed:15255870}. ENOG411DS0K Q8W3M6 UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase (EC 3.1.3.16) (Nuclear proteasome inhibitor UBLCP1) FUNCTION: Dephosphorylates 26S nuclear proteasomes, thereby decreasing their proteolytic activity. The dephosphorylation may prevent assembly of the core and regulatory particles (CP and RP) into mature 26S proteasome (By similarity). {ECO:0000250}. 3.1.3.16 38956 Ubiquitin-like domain-containing CTD phosphatase (EC 3.1.3.16) (Nuclear proteasome inhibitor UBLCP1) nucleus [GO:0005634]; phosphoprotein phosphatase activity [GO:0004721] locus:1005716300; AT4G06599 Ubiquitin-like domain-containing CTD CTD-like phosphatase domain-containing protein-like (Os01g0875400 protein) (p0648C09.20 protein) Q8RYY0 Q8RYY0_ORYSJ P0648C09.20 Os01g0875400 OsJ_04266 OSNPB_010875400 P0698A10.21 ENOG411DS0J ATL46,ATL48 Q9FL07,Q7X843,A0A1I9LNQ5 ATL46_ARATH,ATL48_ARATH,A0A1I9LNQ5_ARATH RING-H2 finger protein ATL46 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL46),RING-H2 finger protein ATL48 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL48) (YGHL1-C3HC4 RING fusion protein),Hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 41792,38687,30210 RING-H2 finger protein ATL46 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL46),RING-H2 finger protein ATL48 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL48) (YGHL1-C3HC4 RING fusion protein),Hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021] locus:2173772;,locus:2097890; AT5G40250,AT3G48030 RING-H2 finger protein Os02g0743100 protein (Putative RING finger 1),Os06g0233200 protein (Putative RING finger 1) (cDNA clone:002-138-B01, full insert sequence) Q6Z2V8,Q67UK4 Q6Z2V8_ORYSJ,Q67UK4_ORYSJ Os02g0743100 OJ1734_E02.8 OsJ_08348 OSNPB_020743100 P0585G03.31,Os06g0233200 OsJ_20714 OSNPB_060233200 P0479H10.32 ENOG411DS0H O22773,A0A1P8B5H3,A0A1P8B5G9 TL16_ARATH,A0A1P8B5H3_ARATH,A0A1P8B5G9_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic,Chloroplast thylakoid lumen protein 23663,29713,28025 Thylakoid lumenal 16.5 kDa protein, chloroplastic,Chloroplast thylakoid lumen protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; response to cytokinin [GO:0009735],integral component of membrane [GO:0016021] locus:2132323; AT4G02530 Thylakoid lumenal 16.5 kDa protein Os06g0705100 protein (Putative thylakoid lumenal 16.5 kDa protein, chloroplast) (cDNA clone:001-207-H01, full insert sequence) (cDNA clone:006-202-C07, full insert sequence) (cDNA clone:006-310-G02, full insert sequence) (cDNA clone:J013109D14, full insert sequence) Q5Z8V3 Q5Z8V3_ORYSJ Os06g0705100 Os06g0705100 OsJ_22566 OSNPB_060705100 P0018H04.9 ENOG411DS0N Q8L7V7 Q8L7V7_ARATH AT4g02010/T10M13_2 (Protein kinase superfamily protein) R-ATH-446652; 79047 AT4g02010/T10M13_2 (Protein kinase superfamily protein) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2132168; AT4G02010 NAK-like ser thr protein kinase Os01g0253100 protein,Os01g0253100 protein (Fragment) Q5NBQ2,A0A0P0V0V5 Q5NBQ2_ORYSJ,A0A0P0V0V5_ORYSJ Os01g0253100 Os01g0253100 OSNPB_010253100 P0503G09.11,Os01g0253100 OSNPB_010253100 ENOG411DS0M Q9C580,F4K8E9 Q9C580_ARATH,F4K8E9_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At5g22080) (Uncharacterized protein At5g22080/T6G21_190),Chaperone DnaJ-domain superfamily protein R-ATH-72163; 29070,26713 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At5g22080) (Uncharacterized protein At5g22080/T6G21_190),Chaperone DnaJ-domain superfamily protein locus:504956462; AT5G22080 dnaJ homolog subfamily C member Os03g0261500 protein,DnaJ domain containing protein, expressed (Os03g0261500 protein) (cDNA clone:J013000L19, full insert sequence) A3AG94,Q10NS2 A3AG94_ORYSJ,Q10NS2_ORYSJ Os03g0261500 OsJ_10214 OSNPB_030261500,LOC_Os03g15480 Os03g0261500 OSNPB_030261500 ENOG411DZ2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein serine/threonine phosphatase activity Probable protein phosphatase 2C 19 (OsPP2C19) (EC 3.1.3.16),Probable protein phosphatase 2C 20 (OsPP2C20) (EC 3.1.3.16),Probable protein phosphatase 2C 21 (OsPP2C21) (EC 3.1.3.16),Putative protein phosphatase 2C 22 (OsPP2C22) (EC 3.1.3.16),Os02g0606900 protein (Fragment),Os02g0607433 protein,Os02g0600033 protein,Os02g0599700 protein (Fragment) Q0DZT4,Q6K5I0,A3A8W2,A3A8W6,A0A0P0VLF1,A0A0P0VLF3,A0A0P0VL96,A0A0P0VLE2 P2C19_ORYSJ,P2C20_ORYSJ,P2C21_ORYSJ,P2C22_ORYSJ,A0A0P0VLF1_ORYSJ,A0A0P0VLF3_ORYSJ,A0A0P0VL96_ORYSJ,A0A0P0VLE2_ORYSJ Os02g0599700 LOC_Os02g38780 OsJ_007181,Os02g0600000 LOC_Os02g38804 OJ1791_B03.14 OJ1791_B03.15,Os02g0606900 LOC_Os02g39410 OsJ_007234 OsJ_07456,Os02g0607500 LOC_Os02g39480 OsJ_007238 OSJNBa0030C08.21,Os02g0606900 OSNPB_020606900,Os02g0607433 OSNPB_020607433,Os02g0600033 OSNPB_020600033,Os02g0599700 OSNPB_020599700 ENOG411DZ2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411DZ2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain RING-type E3 ubiquitin transferase (EC 2.3.2.27) A0A0P0W983 A0A0P0W983_ORYSJ Os04g0373200 OSNPB_040373200 ENOG411DTDB CYCA2-2,CYCA2-3,CYCA2-1,CYCA2-4,CYCA1-1,CYCA2:1,CYC3B Q147G5,Q38819,Q39071,Q9C968,Q9C6Y3,A0A1P8BH26,A0A1P8BA04,A0A1P8BH20 CCA22_ARATH,CCA23_ARATH,CCA21_ARATH,CCA24_ARATH,CCA11_ARATH,A0A1P8BH26_ARATH,A0A1P8BA04_ARATH,A0A1P8BH20_ARATH Cyclin-A2-2 (Cyc3b-At) (Cyclin-3b) (G2/mitotic-specific cyclin-A2-2) (CycA2;2),Cyclin-A2-3 (Cyc3c-At) (Cyclin-3c) (G2/mitotic-specific cyclin-A2-3) (CycA2;3),Cyclin-A2-1 (Cyc3a-At) (Cyclin-3a) (G2/mitotic-specific cyclin-A2-1) (CycA2;1),Cyclin-A2-4 (G2/mitotic-specific cyclin-A2-4) (CycA2;4),Cyclin-A1-1 (G2/mitotic-specific cyclin-A1-1) (CycA1;1),Cyclin a21,Mitotic-like cyclin 3B from Arabidopsi Homozygous mutant plants [CYCA2;3(-/-)] did not show any phenotype with morphology or growth rates obviously different from those of the wild type. However the nuclei in trichomes of the mutant plants were larger than those of wild-type trichomes. The proportion of trichomes with four ranches was significantly higher and that of three-branch trichomes was significantly lower in the mutant than in the wild type. The mutation significantly increased the proportion of cells with a ploidy levels of 16C or higher,Ploidy levels show an increased ratio of 32C cells compared to the wild type in dark-grown hypocotyls and an increase in levels of 16C cells in light-grown hypocotyl and cotyledon cells.,no morphological visible phenotype observed Abnormal trichome branching; Increased ploidy levels; No other phenotypes detected-T. Aoyama-2006,Increased ploidy levels-M. Matsui-2008 FUNCTION: Negatively regulates endocycles and acts as a regulator of ploidy levels in endoreduplication (PubMed:16415207). Promotes divisions in the guard cells (GCs) after the guard mother cells (GMC) symmetric division (PubMed:24687979). {ECO:0000269|PubMed:16415207, ECO:0000269|PubMed:24687979}.,FUNCTION: May negatively regulate endocycles and act as a regulator of ploidy levels in endoreduplication. {ECO:0000269|PubMed:17012601}. R-ATH-1538133;R-ATH-174184;R-ATH-5689880;R-ATH-5693607;R-ATH-68911;R-ATH-68949;R-ATH-69273;R-ATH-69656; 49694,50642,50336,51637,51904,49706,47206,47600 Cyclin-A2-2 (Cyc3b-At) (Cyclin-3b) (G2/mitotic-specific cyclin-A2-2) (CycA2;2),Cyclin-A2-3 (Cyc3c-At) (Cyclin-3c) (G2/mitotic-specific cyclin-A2-3) (CycA2;3),Cyclin-A2-1 (Cyc3a-At) (Cyclin-3a) (G2/mitotic-specific cyclin-A2-1) (CycA2;1),Cyclin-A2-4 (G2/mitotic-specific cyclin-A2-4) (CycA2;4),Cyclin-A1-1 (G2/mitotic-specific cyclin-A1-1) (CycA1;1),Cyclin a21,Mitotic-like cyclin 3B from Arabidopsi nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; cell proliferation [GO:0008283]; positive regulation of stomatal complex development [GO:2000123],nucleus [GO:0005634]; cell division [GO:0051301]; cell proliferation [GO:0008283]; DNA endoreduplication [GO:0042023]; guard mother cell differentiation [GO:0010444]; lateral root formation [GO:0010311]; positive regulation of stomatal complex development [GO:2000123]; regulation of G2/M transition of mitotic cell cycle [GO:0010389],nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301],nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; cell proliferation [GO:0008283]; stomatal complex development [GO:0010374],cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301],nucleus [GO:0005634],integral component of membrane [GO:0016021]; nucleus [GO:0005634] DEVELOPMENTAL STAGE: Starts to be expressed during S phase with a maximum just before the G2-to-M boundary and disappears in the metaphase of mitosis. Expressed during embryogenesis in the ovule, integuments, egg cell and synergids, and in the embryo up to late-torpedo stage. Expressed during germination in the root apical meristem, shoot apical meristem, vascular bundles of the cotyledons and vascular cylinder of the roots up to lateral roots emergence. Expressed during flowering in the caulines leaves, peduncle, sepals of flower buds, early expanded petals, ovary, placenta, funiculi, devoloping ovules, pollen connective tissues, tapetum, endothecium, epidermis and developing pollen grains. {ECO:0000269|PubMed:11089674}.,DEVELOPMENTAL STAGE: Expressed in the G2/M phases. Remains high in early G1 phase. {ECO:0000269|PubMed:15970679, ECO:0000269|PubMed:16517759}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:7972055}.,TISSUE SPECIFICITY: Expressed in tissues with active cell division: apical root and shoot meristems, lateral root and leaf primordia, floral meristems and developing pollen. {ECO:0000269|PubMed:11089674, ECO:0000269|PubMed:7972055}. locus:2148052;,locus:2196563;,locus:2034250;,locus:2205871; AT5G11300,AT1G15570,AT5G25380,AT1G80370,AT1G44110 K06627 cyclin A Cyclin-A2-1 (G2/mitotic-specific cyclin-A2-1) (CycA2;1) Q2QQ96 CCA21_ORYSJ CYCA2-1 Os12g0502300 LOC_Os12g31810 ENOG411DTDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fn3_like NA NA NA NA NA NA NA ENOG411EG7X A0A1P8B324 A0A1P8B324_ARATH Myb/SANT-like DNA-binding domain protein 23150 Myb/SANT-like DNA-binding domain protein DNA binding [GO:0003677] NA NA NA NA NA NA NA NA ENOG411EG7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EG74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EG71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EG73 F4IK98 F4IK98_ARATH Cysteine-type peptidase 94602 Cysteine-type peptidase cysteine-type peptidase activity [GO:0008234] locus:2054830; AT2G07240 Domain of unknown function (DUF1985) NA NA NA NA NA NA NA ENOG411EG72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin folding cofactor D C terminal NA NA NA NA NA NA NA ENOG411E5IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0723400 protein) Q75GU1 Q75GU1_ORYSJ LOC_Os03g51350 Os03g0723400 OJ1499_D04.17 OsJ_12400 OSNPB_030723400 ENOG411E5IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5IE FAX4 Q8LPG1 FAX4_ARATH Protein FATTY ACID EXPORT 4, chloroplastic (At-FAX4) FUNCTION: May be involved in free fatty acids export from the plastids. {ECO:0000250|UniProtKB:Q93V66}. MISCELLANEOUS: For all TMEM14 proteins, 4 hydrophobic alpha-helical domains are predicted. However, NMR structure determination of the human TMEM14A showed that only 3 of these helices are membrane-spaning while the amphiphilic N-terminal helix is probably located at the lipid micelle-water interface. {ECO:0000305|PubMed:25646734}. 18433 Protein FATTY ACID EXPORT 4, chloroplastic (At-FAX4) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021] locus:505006165; AT1G33265 Transmembrane proteins 14C Os04g0577800 protein (cDNA, clone: J100080N01, full insert sequence) B7FAK3 B7FAK3_ORYSJ Os04g0577800 Os04g0577800 OSNPB_040577800 ENOG411E5ID ERF010 Q9FH94 ERF10_ARATH Ethylene-responsive transcription factor ERF010 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 21048 Ethylene-responsive transcription factor ERF010 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2155498; AT5G67190 Transcription factor NA NA NA NA NA NA NA ENOG411E5IG MCO15.9 Q8L908 Q8L908_ARATH At5g55140 (Ribosomal protein L30 family protein) 12359 At5g55140 (Ribosomal protein L30 family protein) large ribosomal subunit [GO:0015934]; mitochondrion [GO:0005739]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2161645; AT5G55140 ribosomal protein Os06g0339800 protein (Ribosomal protein L30p-like),Os08g0110100 protein (Ribosomal protein L30p family-like) Q5Z890,Q6ZC61 Q5Z890_ORYSJ,Q6ZC61_ORYSJ Os06g0339800 Os06g0339800 OJ1294_G12.18 OSNPB_060339800 P0428A03.4,Os08g0110100 Os08g0110100 OsJ_25781 OSNPB_080110100 P0007D08.25 ENOG411E5IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 B3 domain-containing protein Os06g0107800,Os06g0107800 protein Q5VS55,A0A0P0WRZ6 Y6078_ORYSJ,A0A0P0WRZ6_ORYSJ Os06g0107800 LOC_Os06g01860 P0514G12.9 P0644B06.53,Os06g0107800 OSNPB_060107800 ENOG411E5II NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aquaporin MIP family PIP subfamily NA NA NA NA NA NA NA ENOG411E5IK RPS10 P42797 RT10_ARATH 40S ribosomal protein S10, mitochondrial 27087 40S ribosomal protein S10, mitochondrial mitochondrial small ribosomal subunit [GO:0005763]; mitochondrion [GO:0005739]; small ribosomal subunit [GO:0015935]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2087827; AT3G22300 ribosomal protein s10 Mitochondrial ribosomal protein S10 (Mitochondrial ribosomal protein S10, putative, expressed) (Os12g0517200 protein) (cDNA clone:J013098N07, full insert sequence) Q9LRH5 Q9LRH5_ORYSJ rps10 LOC_Os12g33240 Os12g0517200 OsJ_36296 OSNPB_120517200 ENOG411E5IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os03g0393600 protein,Os03g0393650 protein Q84QZ4,A0A0P0VYD7 Q84QZ4_ORYSJ,A0A0P0VYD7_ORYSJ Os03g0393600 LOC_Os03g27570 OsJ_11133 OSJNBa0093I13.12 OSNPB_030393600,Os03g0393650 OSNPB_030393650 ENOG411E5IM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor NA NA NA NA NA NA NA ENOG411E5IN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWP-RK domain NA NA NA NA NA NA NA ENOG411E5IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBM_2 NA NA NA NA NA NA NA ENOG411E5IP T8P19.60 Q9SMP3,A0A1I9LLT9 Q9SMP3_ARATH,A0A1I9LLT9_ARATH At3g48550 (SHOOT GRAVITROPISM-like protein) (Uncharacterized protein T8P19.60),SHOOT GRAVITROPISM-like protein 18353,14545 At3g48550 (SHOOT GRAVITROPISM-like protein) (Uncharacterized protein T8P19.60),SHOOT GRAVITROPISM-like protein locus:2114505; AT3G48550 NA Os02g0507100 protein,Os04g0386300 protein (Fragment) Q0E103,A0A0P0W9J2 Q0E103_ORYSJ,A0A0P0W9J2_ORYSJ Os02g0507100 Os02g0507100 OSNPB_020507100,Os04g0386300 OSNPB_040386300 ENOG411E5IS A0A1P8B468,F4JS23 A0A1P8B468_ARATH,F4JS23_ARATH Calcium ion-binding protein 16468,18043 Calcium ion-binding protein locus:505006567; AT4G37445 NA NA NA NA NA NA NA NA ENOG411E5IR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os07g0175600 protein (Protease inhibitor-like protein) (cDNA clone:001-121-C08, full insert sequence) (cDNA clone:J033042C03, full insert sequence) Q8H567 Q8H567_ORYSJ OJ1656_E11.137 Os07g0175600 OSNPB_070175600 P0534H07.2 ENOG411E5IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0520600 protein Q6YZV8 Q6YZV8_ORYSJ Os08g0520600 Os08g0520600 OJ1003_A09.17 OsJ_27965 OSNPB_080520600 ENOG411E5IW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os09g0505000 protein A0A0P0XPH1 A0A0P0XPH1_ORYSJ Os09g0505000 OSNPB_090505000 ENOG411E5IV Q9LYM3,A0A1I9LQL5 LOR14_ARATH,A0A1I9LQL5_ARATH Protein LURP-one-related 14,LURP-one-like protein (DUF567) FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 23167,23477 Protein LURP-one-related 14,LURP-one-like protein (DUF567) locus:2078506; AT3G56180 Pfam:DUF567 NA NA NA NA NA NA NA ENOG411E5IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Glycosyl hydrolase family protein 17-like (Os01g0763900 protein) (cDNA clone:002-139-D06, full insert sequence) Q5JN21 Q5JN21_ORYSJ Os01g0763900 OsJ_03557 OSNPB_010763900 P0403C05.3 ENOG411E5IZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0438100 protein (cDNA clone:001-112-A10, full insert sequence) Q69LJ5 Q69LJ5_ORYSJ Os09g0438100 OJ1328_D07.26 OSNPB_090438100 P0556H01.9 ENOG411E5I1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0206900 protein (cDNA clone:J023086C11, full insert sequence),Os02g0775300 protein (cDNA clone:002-175-G05, full insert sequence) Q69TF5,Q6YZ53 Q69TF5_ORYSJ,Q6YZ53_ORYSJ Os06g0206900 OSNPB_060206900 P0529B09.11,Os02g0775300 Os02g0775300 OJ1448_G06.21 OSJNBb0013K01.2 OSNPB_020775300 ENOG411E5I0 ndhE P26289 NU4LC_ARATH NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 4L) (NADH-plastoquinone oxidoreductase subunit 4L) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01456}. ARA:ATCG01070-MONOMER; 1.6.5.- 11288 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 4L) (NADH-plastoquinone oxidoreductase subunit 4L) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NADH dehydrogenase complex [GO:0030964]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; NADPH dehydrogenase activity [GO:0003959]; quinone binding [GO:0048038]; ATP synthesis coupled electron transport [GO:0042773]; transport [GO:0006810]; ubiquinone biosynthetic process [GO:0006744] locus:504954730; ATCG01070 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 4L) (NADH-plastoquinone oxidoreductase subunit 4L) P0C334 NU4LC_ORYSJ ndhE Nip171 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01456}. ENOG411E5I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) EL5-like (Os06g0155200 protein),Os06g0155400 protein (Fragment) Q5VMB7,A0A0P0WT20 Q5VMB7_ORYSJ,A0A0P0WT20_ORYSJ Os06g0155200 OSJNBa0085L11.24 OSNPB_060155200 P0046E09.2,Os06g0155400 OSNPB_060155400 ENOG411E5I2 MNC6.13 Q6NPG2 Q6NPG2_ARATH At5g53590 (SAUR-like auxin-responsive protein family) 16679 At5g53590 (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2168611; AT5G53590 SAUR family Os10g0510500 protein Q0IWG4 Q0IWG4_ORYSJ Os10g0510500 Os10g0510500 OsJ_32127 OSNPB_100510500 ENOG411E5I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os01g0930300 protein,Os12g0156200 protein,Os01g0177800 protein,Os08g0558501 protein,Os10g0174700 protein Q0JGC7,A0A0N7KTL5,A0A0P0UYZ9,A0A0P0XIB4,A0A0P0XS68 Q0JGC7_ORYSJ,A0A0N7KTL5_ORYSJ,A0A0P0UYZ9_ORYSJ,A0A0P0XIB4_ORYSJ,A0A0P0XS68_ORYSJ Os01g0930300 Os01g0930300 OSNPB_010930300,Os12g0156200 OSNPB_120156200,Os01g0177800 OSNPB_010177800,Os08g0558501 OSNPB_080558501,Os10g0174700 OSNPB_100174700 ENOG411E5I4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1995) NA NA NA NA NA NA NA ENOG411E5I6 Q9LXV4 C3H56_ARATH Zinc finger CCCH domain-containing protein 56 (AtC3H56) 77775 Zinc finger CCCH domain-containing protein 56 (AtC3H56) cytoplasm [GO:0005737]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2182250; AT5G12850 ZnF_C3H1 NA NA NA NA NA NA NA ENOG411E5I9 Q9M0D5 Q9M0D5_ARATH AT4g29480/F17A13_300 (Copia-like retroelement pol polyprotein) (Mitochondrial ATP synthase subunit G protein) (Uncharacterized protein AT4g29480) 13940 AT4g29480/F17A13_300 (Copia-like retroelement pol polyprotein) (Mitochondrial ATP synthase subunit G protein) (Uncharacterized protein AT4g29480) mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [GO:0000276]; mitochondrion [GO:0005739]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled cation transmembrane transport [GO:0099132]; ATP synthesis coupled proton transport [GO:0015986] locus:2118254; AT4G29480 atp synthase Os01g0720100 protein,Os05g0533800 protein (cDNA, clone: J065036M17, full insert sequence) A2ZXB0,B7F8F4 A2ZXB0_ORYSJ,B7F8F4_ORYSJ Os01g0720100 OsJ_03279 OSNPB_010720100,Os05g0533800 OSNPB_050533800 ENOG411E5I8 F13G24.250 Q9SD79 Q9SD79_ARATH Uncharacterized protein F13G24.250 (Wiskott-aldrich syndrome family protein, putative (DUF1118)) 16580 Uncharacterized protein F13G24.250 (Wiskott-aldrich syndrome family protein, putative (DUF1118)) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; granal stacked thylakoid [GO:0009515]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; chloroplast organization [GO:0009658]; granum assembly [GO:0090391]; nonphotochemical quenching [GO:0010196]; positive regulation of transcription, DNA-templated [GO:0045893]; response to karrikin [GO:0080167]; thylakoid membrane organization [GO:0010027] locus:2142848; AT5G08050 Protein of unknown function (DUF1118) Expressed protein (Os12g0575000 protein) (cDNA clone:001-107-F10, full insert sequence) (cDNA clone:006-208-A11, full insert sequence),Os11g0460900 protein (Fragment) Q2QN86,A0A0P0Y2E0 Q2QN86_ORYSJ,A0A0P0Y2E0_ORYSJ Os12g0575000 LOC_Os12g38640 Os12g0575000 OSNPB_120575000,Os11g0460900 OSNPB_110460900 ENOG411DXBX CSLE1 Q8VZK9 CSLE1_ARATH Cellulose synthase-like protein E1 (AtCslE1) (EC 2.4.1.-) FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ARA:AT1G55850-MONOMER; 2.4.1.- 82347 Cellulose synthase-like protein E1 (AtCslE1) (EC 2.4.1.-) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type primary cell wall biogenesis [GO:0009833] locus:2012050; AT1G55850 cellulose synthase-like protein Cellulose synthase-like protein E1 (EC 2.4.1.-) (OsCslE1),Cellulose synthase-like protein E6 (EC 2.4.1.-) (OsCslE6),Os09g0478100 protein (Fragment),Os09g0478300 protein,Os09g0478000 protein (Fragment) Q651X7,Q651X6,A0A0P0XN69,A0A0P0XNV5,A0A0P0XNZ3,A0A0P0XPD8 CSLE1_ORYSJ,CSLE6_ORYSJ,A0A0P0XN69_ORYSJ,A0A0P0XNV5_ORYSJ,A0A0P0XNZ3_ORYSJ,A0A0P0XPD8_ORYSJ CSLE1 Os09g0478100 LOC_Os09g30120 OsJ_028602 P0556A05.31-1 P0556A05.31-2,CSLE6 Os09g0478300 Os09g0478200 LOC_Os09g30130 P0556A05.32,Os09g0478100 OSNPB_090478100,Os09g0478300 OSNPB_090478300,Os09g0478000 OSNPB_090478000 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ENOG411DXBY AE7 Q9C9G6 AE7_ARATH Protein AE7 (AS1/2 enhancer 7) (Asymmetric leaves 1/2 enhancer 7) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:23104832}. Short primary root; Narrow, pale green, downward-bending leaves; Protruding trichome support cells-X. Cui-2010 FUNCTION: Central member of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) pathway (PubMed:23104832). Involved in leaf polarity formation (PubMed:21070412). Promotes leaf adaxial identity (PubMed:21070412). May play a role in the cell cycle progression and is required for cell proliferation (PubMed:21070412). {ECO:0000269|PubMed:21070412, ECO:0000269|PubMed:23104832}. 17835 Protein AE7 (AS1/2 enhancer 7) (Asymmetric leaves 1/2 enhancer 7) cytoplasm [GO:0005737]; nucleus [GO:0005634]; vacuolar sorting signal binding [GO:0010209]; chromosome segregation [GO:0007059]; DNA metabolic process [GO:0006259]; intrachromosomal DNA recombination [GO:1990067]; iron-sulfur cluster assembly [GO:0016226]; polarity specification of adaxial/abaxial axis [GO:0009944]; positive regulation of response to DNA damage stimulus [GO:2001022]; regulation of cell cycle [GO:0051726]; regulation of cell proliferation [GO:0042127] DEVELOPMENTAL STAGE: Expressed throughout the globular-stage, heart-stage and torpedo-stage embryos. {ECO:0000269|PubMed:21070412}. TISSUE SPECIFICITY: Expressed in the embryo, shoot apical meristem, leaf primordia, inflorescence and all floral organs. {ECO:0000269|PubMed:21070412}. locus:2199362; AT1G68310 MIP18 family protein At1g68310-like Os04g0595200 protein (Os04g0596400 protein) Q0JAJ1 Q0JAJ1_ORYSJ Os04g0596400 Os04g0595200 OSNPB_040596400 ENOG411DXBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0650900 protein A0A0P0V5X7 A0A0P0V5X7_ORYSJ Os01g0650900 OSNPB_010650900 ENOG411DXBW RKP Q9SIZ8,F4IIK4 RKP_ARATH,F4IIK4_ARATH E3 ubiquitin-protein ligase RKP (AtKPC1) (EC 2.3.2.27) (Protein RELATED TO KPC1) (RING-type E3 ubiquitin transferase RKP),Related to KPC1 DISRUPTION PHENOTYPE: No defects in growth and development, but reduced susceptibility to beet severe curly top virus infection. {ECO:0000269|PubMed:18005227, ECO:0000269|PubMed:19000158}. Resistant to viral infection; Low callose levels-Q. Xie-2009 FUNCTION: E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of KRP1 and KRP2. {ECO:0000269|PubMed:18005227, ECO:0000269|PubMed:19000158}. MISCELLANEOUS: Favors geminivirus replication by up-regulating the host cell cycle. 2.3.2.27 144499,144842 E3 ubiquitin-protein ligase RKP (AtKPC1) (EC 2.3.2.27) (Protein RELATED TO KPC1) (RING-type E3 ubiquitin transferase RKP),Related to KPC1 integral component of membrane [GO:0016021]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-ubiquitin ligase activity [GO:0034450]; cellular process regulating host cell cycle in response to virus [GO:0060154]; protein catabolic process [GO:0030163]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511],ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin-ubiquitin ligase activity [GO:0034450]; proteolysis involved in cellular protein catabolic process [GO:0051603]; regulation of cell cycle [GO:0051726]; response to virus [GO:0009615]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2052581; AT2G22010 E3 ubiquitin-protein ligase Os03g0428000 protein,Os07g0626900 protein (Fragment) A0A0P0VZ27,A0A0P0X9C1 A0A0P0VZ27_ORYSJ,A0A0P0X9C1_ORYSJ Os03g0428000 OSNPB_030428000,Os07g0626900 OSNPB_070626900 ENOG411DXBU BRIX1-2,BRIX1-1 Q9C928,Q9LE16 BRX12_ARATH,BRX11_ARATH Ribosome biogenesis protein BRX1 homolog 2 (AtBRX1-2),Ribosome biogenesis protein BRX1 homolog 1 (AtBRX1-1) (Brix domain-containing protein 2) DISRUPTION PHENOTYPE: Delayed growth rate. {ECO:0000269|PubMed:25605960}. Absence of ABA-induced inhibition of seed germination.,Mutant plants exhibit all known major ABA defects (seed dormancy stomatal opening growth inhibition).,Reduced seed dormancy phenotype.,Seedling growth inhibition by ABA was substantially reduced in the mutant compared with that of the wild type. In the absence of ABA the mutant seedlings developed normally and were indistinguishable from the wild-type seedlings.,The defect exhibited by the double mutant in ABA-induced stomatal closure was similar to that exhibited by both single mutants. FUNCTION: Involved in pre-rRNA processing and required for biogenesis of the large (60S) ribosomal subunit. Required for proper development. {ECO:0000269|PubMed:25605960}. 36697,36350 Ribosome biogenesis protein BRX1 homolog 2 (AtBRX1-2),Ribosome biogenesis protein BRX1 homolog 1 (AtBRX1-1) (Brix domain-containing protein 2) cytosol [GO:0005829]; nucleolus [GO:0005730]; RNA binding [GO:0003723]; ribosomal large subunit assembly [GO:0000027]; rRNA processing [GO:0006364],nucleolus [GO:0005730]; RNA binding [GO:0003723]; ribosomal large subunit assembly [GO:0000027]; rRNA processing [GO:0006364] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, flowers, siliques and seeds. {ECO:0000269|PubMed:25605960}. locus:2011486;,locus:2090131; AT1G52930,AT3G15460 ribosome biogenesis protein Os01g0148400 protein (cDNA clone:J013128N08, full insert sequence),Os02g0591800 protein (Putative brix domain-containing protein) (cDNA clone:J033096G24, full insert sequence) Q5ZEE1,Q69L77 Q5ZEE1_ORYSJ,Q69L77_ORYSJ Os01g0148400 OSNPB_010148400 P0434B04.16,Os02g0591800 OSJNBa0016G10.5 OSNPB_020591800 ENOG411DXBJ VTC4 Q9M8S8,A2RVV3,Q9M8S7,F4IYH1,B3H749 VTC4_ARATH,A2RVV3_ARATH,Q9M8S7_ARATH,F4IYH1_ARATH,B3H749_ARATH Inositol-phosphate phosphatase (EC 3.1.3.25) (L-galactose 1-phosphate phosphatase) (EC 3.1.3.93) (Myo-inositol monophosphatase),At3g02860 (Zinc ion binding protein),F13E7.20 protein (Uncharacterized protein At3g02860) (Zinc ion binding protein),Inositol-1-monophosphatase (EC 3.1.3.25) DISRUPTION PHENOTYPE: No visible phenotype, but reduced myoinositol and ascorbate levels. {ECO:0000269|PubMed:16595667, ECO:0000269|PubMed:19339506, ECO:0000269|PubMed:20960216}. ascorbate deficient Low ascorbate levels-N. Smirnoff-2006 FUNCTION: Phosphatase acting on L-galactose 1-phosphate (L-Gal 1-P), D-myoinositol 3-phosphate (D-Ins 3-P) and D-myoinositol 1-phosphate (D-Ins 1-P). Can also use beta-glycerophosphate (glycerol 2-P) and, to a lesser extent, D-galactose 1-phosphate (D-Gal 1-P), alpha-D-glucose 1-phosphate (a-D-Glc 1-P), D-manitol 1-phosphate and adenosine 2'-monophosphate as substrates. No activity with D-fructose 1-phosphate (D-Fru 1-P), fructose 1,6-bisphosphate (Fru 1,6-bisP), D-glucose 6-phosphate (D-Glc 6-P), D-alpha-glycerophosphate (glycerol 3-P), D-sorbitol 6-phosphate and D-myoinositol 2-phosphate. The C1 phosphate position in a six-member ring substrate is important for catalysis. {ECO:0000269|PubMed:15550539, ECO:0000269|PubMed:16595667, ECO:0000269|PubMed:19339506}. PATHWAY: Polyol metabolism; myo-inositol biosynthesis; myo-inositol from D-glucose 6-phosphate: step 2/2.,PATHWAY: Polyol metabolism; myo-inositol biosynthesis; myo-inositol from D-glucose 6-phosphate: step 2/2. {ECO:0000256|RuleBase:RU364068}. MetaCyc:AT3G02870-MONOMER; R-ATH-1855183; 3.1.3.25;3.1.3.93;3.1.3.B9; 3.1.3.25; 3.1.3.93,3.1.3.25 29121,35139,35210,28935,28806 Inositol-phosphate phosphatase (EC 3.1.3.25) (L-galactose 1-phosphate phosphatase) (EC 3.1.3.93) (Myo-inositol monophosphatase),At3g02860 (Zinc ion binding protein),F13E7.20 protein (Uncharacterized protein At3g02860) (Zinc ion binding protein),Inositol-1-monophosphatase (EC 3.1.3.25) cytosol [GO:0005829]; plasma membrane [GO:0005886]; inositol monophosphate 1-phosphatase activity [GO:0008934]; inositol monophosphate 3-phosphatase activity [GO:0052832]; inositol monophosphate 4-phosphatase activity [GO:0052833]; L-galactose-1-phosphate phosphatase activity [GO:0010347]; metal ion binding [GO:0046872]; inositol biosynthetic process [GO:0006021]; inositol phosphate dephosphorylation [GO:0046855]; L-ascorbic acid biosynthetic process [GO:0019853]; phosphatidylinositol phosphorylation [GO:0046854]; response to cold [GO:0009409]; response to karrikin [GO:0080167]; signal transduction [GO:0007165],nucleic acid binding [GO:0003676],cytosol [GO:0005829]; nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; mitotic cell cycle [GO:0000278]; negative regulation of reactive oxygen species biosynthetic process [GO:1903427]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of seed germination [GO:0010030]; response to abscisic acid [GO:0009737],inositol monophosphate 1-phosphatase activity [GO:0008934]; inositol monophosphate 3-phosphatase activity [GO:0052832]; inositol monophosphate 4-phosphatase activity [GO:0052833]; metal ion binding [GO:0046872]; inositol biosynthetic process [GO:0006021]; inositol phosphate dephosphorylation [GO:0046855]; phosphatidylinositol phosphorylation [GO:0046854] DEVELOPMENTAL STAGE: Detected in globular to heart stage embryos. {ECO:0000269|PubMed:20960216}. TISSUE SPECIFICITY: Strongly expressed in photosynthetic tissues. Expressed in pistil and seed endosperm. {ECO:0000269|PubMed:20960216}. locus:2075392;,locus:2075422; AT3G02870,AT3G02860 Inositol monophosphatase Inositol-1-monophosphatase (EC 3.1.3.25) Q6F2U7 Q6F2U7_ORYSJ OSJNBa0010D22.28 LOC_Os03g39000 Os03g0587000 OsJ_11581 OSNPB_030587000 ENOG411DXBN DTX27 Q9FKQ1 DTX27_ARATH Protein DETOXIFICATION 27 (AtDTX27) (Multidrug and toxic compound extrusion protein 27) (MATE protein 27) R-ATH-425366; 52972 Protein DETOXIFICATION 27 (AtDTX27) (Multidrug and toxic compound extrusion protein 27) (MATE protein 27) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:2168210; AT5G65380 protein TRANSPARENT TESTA Os03g0188100 protein A0A0P0VU39 A0A0P0VU39_ORYSJ Os03g0188100 OSNPB_030188100 ENOG411DXBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CH Os02g0588300 protein (Putative fimbrin 1) Q6YXZ9 Q6YXZ9_ORYSJ Os02g0588300 OsJ_07315 OSJNBb0046O12.16 OSJNBb0056I22.56 OSNPB_020588300 ENOG411DXBG KU70 Q9FQ08 KU70_ARATH ATP-dependent DNA helicase 2 subunit KU70 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Hypersensitivity to ionising radiation (IR) and to methylmethane sulfonate (MMS). Longer telomeres. {ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12140324, ECO:0000269|PubMed:12511598}. Hypersensitive to ionizing radiation and chemical mutagens,In contrast to the ku70 mutant which undergo telomerase-dependent expansion to more than twice the normal length in a single generation the ku70 tert double mutant displays accelerated telomere shortening and a precocious onset of genome stability.,The mutants failed to elongate their telomeres and exhibited a heterogeneous profile of TRF products similar to that seen in ku70 tert.,Same degree of telomere shortening as in the pot1 ku70 and ku70 tert double mutants. Sensitive to ionizing radiation and chemical mutagens-P. Hooykaas-2002 FUNCTION: Single-stranded DNA-dependent ATP-dependent helicase. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair. When associated with KU80, binds to double-stranded telomeric and non-telomeric DNA sequences, but not to single-stranded DNA. Plays a role in maintaining telomere length. Acts as a negative regulator of telomerase. Required for maintenance of the telomeric C-rich strand. {ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12148535, ECO:0000269|PubMed:12182708, ECO:0000269|PubMed:12511598, ECO:0000269|PubMed:20844935}. R-ATH-5693571;R-ATH-6798695; 3.6.4.12 70291 ATP-dependent DNA helicase 2 subunit KU70 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit) cytoplasm [GO:0005737]; Ku70:Ku80 complex [GO:0043564]; nuclear chromosome, telomeric region [GO:0000784]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; damaged DNA binding [GO:0003684]; double-stranded DNA binding [GO:0003690]; telomeric DNA binding [GO:0042162]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; double-strand break repair via nonhomologous end joining [GO:0006303]; response to heat [GO:0009408]; telomere maintenance [GO:0000723] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12148535}. locus:2035495; AT1G16970 ATP-dependent DNA helicase 2 subunit ATP-dependent DNA helicase 2 subunit KU70 (OsKU70) (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit),Os07g0184900 protein (Fragment),Os07g0184900 protein Q7F1M0,A0A0P0X2W0,A0A0P0X2Z7 KU70_ORYSJ,A0A0P0X2W0_ORYSJ,A0A0P0X2Z7_ORYSJ KU70 Os07g0184900 LOC_Os07g08729 OJ1046_F10.128 OsJ_23357 OsJ_23359,Os07g0184900 OSNPB_070184900 DISRUPTION PHENOTYPE: Severe developmental defects in both vegetative and reproductive organs resulting in sterile flowers. Hypersensitivity to methylmethane sulfonate (MMS). Longer telomeres. {ECO:0000269|PubMed:19923234}. FUNCTION: Single-stranded DNA-dependent ATP-dependent helicase. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair. When associated with KU70, binds to double-stranded telomeric and non-telomeric DNA sequences, but not to single-stranded DNA (By similarity). Required for the maintenance of chromosome stability and normal developmental growth. Plays a role in maintaining telomere length. Acts as a negative regulator in telomere homeostasis. {ECO:0000250}. ENOG411DXBE F6F9.27 Q9FXG6,Q8L7K7 Q9FXG6_ARATH,Q8L7K7_ARATH At1g19680 (F6F9.27 protein) (RING finger family protein) (RING/U-box superfamily protein),RING/U-box superfamily protein (Uncharacterized protein At1g75400) (Uncharacterized protein At1g75400/F1B16_13) 47975,49301 At1g19680 (F6F9.27 protein) (RING finger family protein) (RING/U-box superfamily protein),RING/U-box superfamily protein (Uncharacterized protein At1g75400) (Uncharacterized protein At1g75400/F1B16_13) locus:2013114;,locus:2018404; AT1G19680,AT1G75400 zinc finger C3HC4 type domain containing protein expressed C3H2C3 RING-finger protein-like (Os01g0261100 protein) (cDNA clone:J033091I10, full insert sequence) Q5NAS8 Q5NAS8_ORYSJ Os01g0261100 Os01g0261100 OSNPB_010261100 P0469E09.4 P0699D11.23 ENOG411DXB9 RPL1,EMB3126 Q9LY66,F4J296 RK1_ARATH,F4J296_ARATH 50S ribosomal protein L1, chloroplastic (CL1),Ribosomal protein Embryo defective; Preglobular / Globular-D. Meinke-2011 FUNCTION: This protein binds directly to 23S ribosomal RNA. {ECO:0000250}. 37632,31646 50S ribosomal protein L1, chloroplastic (CL1),Ribosomal protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; nucleus [GO:0005634]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA [GO:0000470]; translation [GO:0006412],large ribosomal subunit [GO:0015934]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2087388; AT3G63490 Ribosomal protein L1 Ribosomal protein Q60E59 Q60E59_ORYSJ Os05g0388500 OsJ_18402 OSJNBa0073E05.17 OSNPB_050388500 ENOG411DXB6 Q9LHQ4 Q9LHQ4_ARATH AT3g20680/F3H11_7 (Plant/protein (DUF1995)) 37436 AT3g20680/F3H11_7 (Plant/protein (DUF1995)) chloroplast [GO:0009507] locus:2083435; AT3G20680 Domain of unknown function (DUF1995) Os05g0500400 protein Q6AUW4 Q6AUW4_ORYSJ Os05g0500400 OJ1057_B02.13 OsJ_19089 OSNPB_050500400 ENOG411EC87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain-containing protein BURP domain-containing protein 1 (OsBURP01),BURP domain-containing protein 6 (OsBURP06),BURP domain-containing protein 8 (OsBURP08),BURP domain-containing protein 7 (OsBURP07),BURP domain-containing protein 2 (OsBURP02),Os05g0217800 protein (Fragment),Os05g0221900 protein Q6I5B3,Q6I5B2,Q75G46,Q60E34,Q6I5W0,A0A0P0WJC5,A0A0P0WJP1 BURP1_ORYSJ,BURP6_ORYSJ,BURP8_ORYSJ,BURP7_ORYSJ,BURP2_ORYSJ,A0A0P0WJC5_ORYSJ,A0A0P0WJP1_ORYSJ BURP1 Os05g0215000 LOC_Os05g12400 OJ1076_H08.1 OSJNBb0067H15.18,BURP6 Os05g0215066 LOC_Os05g12410 OJ1076_H08.2 OSJNBb0067H15.19,BURP8 Os05g0221900 LOC_Os05g13490 B1003C08.11 OSJNBb0043H23.9,BURP7 Os05g0217700 LOC_Os05g12630 OJ1076_H08.14 OsJ_17568 OSJNBb0012L23.3,BURP2 Os05g0217800 LOC_Os05g12640 OJ1076_H08.15 OSJNBb0012L23.4,Os05g0217800 OSNPB_050217800,Os05g0221900 OSNPB_050221900 ENOG411EBPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0305050 protein (Fragment),Os03g0130200 protein (Fragment),Os03g0133650 protein (Fragment),Os03g0133825 protein,Os09g0555850 protein (Fragment),Os02g0119250 protein (Fragment),Os01g0343001 protein (Fragment) A0A0P0VWH9,A0A0P0VSL4,A0A0P0VSM6,A0A0P0VSX1,A0A0P0XQS0,A0A0P0VE10,A0A0P0V2Q3 A0A0P0VWH9_ORYSJ,A0A0P0VSL4_ORYSJ,A0A0P0VSM6_ORYSJ,A0A0P0VSX1_ORYSJ,A0A0P0XQS0_ORYSJ,A0A0P0VE10_ORYSJ,A0A0P0V2Q3_ORYSJ Os03g0305050 OSNPB_030305050,Os03g0130200 OSNPB_030130200,Os03g0133650 OSNPB_030133650,Os03g0133825 OSNPB_030133825,Os09g0555850 OSNPB_090555850,Os02g0119250 OSNPB_020119250,Os01g0343001 OSNPB_010343001 ENOG411EBPT Q8H1Q7 GMPP3_ARATH Probable mannose-1-phosphate guanylyltransferase 3 (EC 2.7.7.13) FUNCTION: Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. {ECO:0000250}. PATHWAY: Nucleotide-sugar biosynthesis; GDP-alpha-D-mannose biosynthesis; GDP-alpha-D-mannose from alpha-D-mannose 1-phosphate (GTP route): step 1/1. 2.7.7.13; 2.7.7.13 36573 Probable mannose-1-phosphate guanylyltransferase 3 (EC 2.7.7.13) GTP binding [GO:0005525]; mannose-1-phosphate guanylyltransferase activity [GO:0004475]; GDP-mannose biosynthetic process [GO:0009298] locus:2118671; AT4G30570 Nucleotidyl transferase NA NA NA NA NA NA NA ENOG411EBPW KCS17 O65677 KCS17_ARATH 3-ketoacyl-CoA synthase 17 (KCS-17) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 17) (VLCFA condensing enzyme 17) FUNCTION: Active on saturated acyl-CoAs up to C22. Mediates the synthesis of VLCFAs from 20 to 26 carbons in length (e.g. C20:1, C20, C24, C26). {ECO:0000269|PubMed:15277688, ECO:0000269|PubMed:16765910}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT4G34510-MONOMER; 2.3.1.199 54912 3-ketoacyl-CoA synthase 17 (KCS-17) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 17) (VLCFA condensing enzyme 17) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:18465198}. locus:2139579; AT4G34510 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411EBPV WIP4 Q8W030 ZWIP4_ARATH Zinc finger protein WIP4 (WIP-domain protein 4) (AtWIP4) FUNCTION: Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. 47155 Zinc finger protein WIP4 (WIP-domain protein 4) (AtWIP4) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2091931; AT3G20880 zinc finger (C2H2 type) protein (WIP4) NA NA NA NA NA NA NA ENOG411EBPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411EBPP Q9FPD5,Q9LND8,Q9LND9 ADSL3_ARATH,ADSL2_ARATH,ADSL1_ARATH Delta-9 desaturase-like 3 protein (EC 1.14.19.-),Delta-9 desaturase-like 2 protein (EC 1.14.19.-),Delta-9 desaturase-like 1 protein (EC 1.14.19.-) PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. ARA:AT1G06120-MONOMER;,ARA:AT1G06100-MONOMER;,ARA:AT1G06090-MONOMER; R-ATH-75105; 1.14.19.- 35178,35356,34770 Delta-9 desaturase-like 3 protein (EC 1.14.19.-),Delta-9 desaturase-like 2 protein (EC 1.14.19.-),Delta-9 desaturase-like 1 protein (EC 1.14.19.-) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; unsaturated fatty acid biosynthetic process [GO:0006636] locus:2198836;,locus:2198816;,locus:2198801; AT1G06120,AT1G06100,AT1G06090 unsaturated fatty acid biosynthetic process NA NA NA NA NA NA NA ENOG411EBPS Q9T0J4 FB249_ARATH Putative F-box protein At4g38870 48337 Putative F-box protein At4g38870 locus:2141801; AT4G38870 NA NA NA NA NA NA NA NA ENOG411EBPR CIPK16 Q9SEZ7 CIPKG_ARATH CBL-interacting serine/threonine-protein kinase 16 (EC 2.7.11.1) (SNF1-related kinase 3.18) (SOS2-like protein kinase PKS15) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Downstream of CBL1, CBL2, CBL3 and CBL9, regulates by phosphorylation the K(+) conductance and uptake of AKT1. {ECO:0000269|PubMed:17898163}. 2.7.11.1 53551 CBL-interacting serine/threonine-protein kinase 16 (EC 2.7.11.1) (SNF1-related kinase 3.18) (SOS2-like protein kinase PKS15) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; hyperosmotic salinity response [GO:0042538]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; sodium ion transport [GO:0006814] locus:2040219; AT2G25090 NAF domain NA NA NA NA NA NA NA ENOG411EBPY ICR5,RIP3 Q8VYU8,A0A1I9LNW9,A0A1I9LNX3,A0A1I9LNX4 ICR5_ARATH,A0A1I9LNW9_ARATH,A0A1I9LNX3_ARATH,A0A1I9LNX4_ARATH Interactor of constitutive active ROPs 5 (Protein MICROTUBULE DEPLETION DOMAIN 1) (ROP-interactive partner 3),ROP interactive partner 4 FUNCTION: ROP effector binding specifically activated ROPs and linking them to the microtubule cytoskeleton. Involved in ROP-regulated polar growth. Involved in local disassembly of cortical microtubules when associated with ARAC10 and KIN13A and conversely mediates also the elimination of ARAC10 from the plasma membrane by the cortical microtubules. Accumulates at the plus end of shrinking microtubules. Targets KIN13A to microtubules. {ECO:0000269|PubMed:20619818, ECO:0000269|PubMed:20832900, ECO:0000269|PubMed:22984069, ECO:0000269|PubMed:24280391}. 45680,46953,49003,46712 Interactor of constitutive active ROPs 5 (Protein MICROTUBULE DEPLETION DOMAIN 1) (ROP-interactive partner 3),ROP interactive partner 4 cytoplasm [GO:0005737]; microtubule [GO:0005874]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; cortical microtubule organization [GO:0043622]; plant-type cell wall organization [GO:0009664],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in xylem cells in the roots and in stamens, petals and pollen. {ECO:0000269|PubMed:20619818}. locus:2083951; AT3G53350 NA NA NA NA NA NA NA NA ENOG411EBPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like NA NA NA NA NA NA NA ENOG411EBPZ IAA13,IAA12 Q38831,Q38830,F4I5P9 IAA13_ARATH,IAA12_ARATH,F4I5P9_ARATH Auxin-responsive protein IAA13 (Indoleacetic acid-induced protein 13),Auxin-responsive protein IAA12 (Indoleacetic acid-induced protein 12) (Protein BODENLOS),Auxin-responsive protein FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 26729,26286,18737 Auxin-responsive protein IAA13 (Indoleacetic acid-induced protein 13),Auxin-responsive protein IAA12 (Indoleacetic acid-induced protein 12) (Protein BODENLOS),Auxin-responsive protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; embryonic pattern specification [GO:0009880]; negative regulation of transcription, DNA-templated [GO:0045892]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Preferentially expressed in stems. {ECO:0000269|PubMed:7658471}.,TISSUE SPECIFICITY: Preferentially expressed in stems, leaves and flowers. {ECO:0000269|PubMed:7658471}. locus:2051154;,locus:2197838; AT2G33310,AT1G04550 AUX/IAA family NA NA NA NA NA NA NA ENOG411EBPE PUB29 Q9LSA6 PUB29_ARATH U-box domain-containing protein 29 (EC 2.3.2.27) (Plant U-box protein 29) (RING-type E3 ubiquitin transferase PUB29) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 46555 U-box domain-containing protein 29 (EC 2.3.2.27) (Plant U-box protein 29) (RING-type E3 ubiquitin transferase PUB29) plasmodesma [GO:0009506]; transmembrane receptor protein serine/threonine kinase binding [GO:0070696]; ubiquitin-protein transferase activity [GO:0004842]; protein ubiquitination [GO:0016567]; response to chitin [GO:0010200] locus:2093974; AT3G18710 Ubox NA NA NA NA NA NA NA ENOG411EBPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aluminium activated malate transporter NA NA NA NA NA NA NA ENOG411EBPG MRO11.4 Q9FF88 Q9FF88_ARATH At5g23920 (Transmembrane protein) (Uncharacterized protein At5g23920) 25803 At5g23920 (Transmembrane protein) (Uncharacterized protein At5g23920) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773] locus:2172878; AT5G23920 NA NA NA NA NA NA NA NA ENOG411EBPF BZIP15 Q9FMM7 AI5L8_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 8 (bZIP transcription factor 15) (AtbZIP15) FUNCTION: Could participate in abscisic acid-regulated gene expression. {ECO:0000250}. 41033 ABSCISIC ACID-INSENSITIVE 5-like protein 8 (bZIP transcription factor 15) (AtbZIP15) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; transcription, DNA-templated [GO:0006351] locus:2159986; AT5G42910 Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EBPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-type lectin S-receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EBPC HVA22H Q8LEM6 HA22H_ARATH HVA22-like protein h (AtHVA22h) 35103 HVA22-like protein h (AtHVA22h) locus:2198631; AT1G19950 TB2/DP1 HVA22 family NA NA NA NA NA NA NA ENOG411EBPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411EBPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EBPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAF domain CBL-interacting protein kinase 3 (EC 2.7.11.1) (OsCIPK03) Q8LIG4 CIPK3_ORYSJ CIPK3 Os07g0687000 LOC_Os07g48760 OJ1150_E04.118 OJ1200_C08.122 OsJ_024629 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411EBPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBPH WNK9 Q2V338,A0A1P8BGR9,F4K718,A0A1P8BGR1 WNK9_ARATH,A0A1P8BGR9_ARATH,F4K718_ARATH,A0A1P8BGR1_ARATH Probable serine/threonine-protein kinase WNK9 (AtWNK9) (EC 2.7.11.1) (Protein kinase with no lysine 9),Protein kinase superfamily protein FUNCTION: May regulate flowering time by modulating the photoperiod pathway. {ECO:0000250}. 2.7.11.1 56915,46780,34422,52587 Probable serine/threonine-protein kinase WNK9 (AtWNK9) (EC 2.7.11.1) (Protein kinase with no lysine 9),Protein kinase superfamily protein cytosol [GO:0005829]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2182039; AT5G28080 STYKc NA NA NA NA NA NA NA ENOG411EBPK SSL1 F4IJZ6 SSL1_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 1 (AtSSL1) (Strictosidine synthase 7) (AtSS7) 44391 Protein STRICTOSIDINE SYNTHASE-LIKE 1 (AtSSL1) (Strictosidine synthase 7) (AtSS7) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058] locus:2040297; AT2G41300 Strictosidine synthase NA NA NA NA NA NA NA ENOG411EBPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os03g0648200 protein,Os05g0489400 protein B9FA18,A0A0N7KL01 B9FA18_ORYSJ,A0A0N7KL01_ORYSJ Os03g0648200 OsJ_11908 OSNPB_030648200,Os05g0489400 OSNPB_050489400 ENOG411EBP5 ARI14,ARI13,ARI15,MBK5.22 Q9FFP1,Q9FFN9,Q84RQ8,Q9FFP0,A0A1P8BGW6 ARI14_ARATH,ARI13_ARATH,ARI15_ARATH,Q9FFP0_ARATH,A0A1P8BGW6_ARATH Probable E3 ubiquitin-protein ligase ARI14 (EC 2.3.2.-) (ARIADNE-like protein ARI14) (Protein ariadne homolog 14) (RING-type E3 ubiquitin transferase ARI14),Probable E3 ubiquitin-protein ligase ARI13 (EC 2.3.2.-) (ARIADNE-like protein ARI13) (Protein ariadne homolog 13) (RING-type E3 ubiquitin transferase ARI13),Probable E3 ubiquitin-protein ligase ARI15 (EC 2.3.2.-) (ARIADNE-like protein ARI15) (Protein ariadne homolog 15) (RING-type E3 ubiquitin transferase ARI15),RING/U-box superfamily protein (Zinc finger protein-like protein),RING/U-box superfamily protein FUNCTION: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (PubMed:12446796). Regulates negatively male gametophyte formation and double fertilization (PubMed:20478994). {ECO:0000269|PubMed:12446796, ECO:0000269|PubMed:20478994}.,FUNCTION: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. {ECO:0000250, ECO:0000269|PubMed:12446796}. MISCELLANEOUS: Transcripts of KPL and ARI14, encoded by adjacent genes organized in a reverse orientation, have the potential to generate natural cis-antisense siRNAs (cis-nat-siRNAs) pair targeting ARI14 in sperm, thus leading to opposite expression levels during male gametophyte development. {ECO:0000269|PubMed:20478994}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.- 59010,61604,51767,26050,40044 Probable E3 ubiquitin-protein ligase ARI14 (EC 2.3.2.-) (ARIADNE-like protein ARI14) (Protein ariadne homolog 14) (RING-type E3 ubiquitin transferase ARI14),Probable E3 ubiquitin-protein ligase ARI13 (EC 2.3.2.-) (ARIADNE-like protein ARI13) (Protein ariadne homolog 13) (RING-type E3 ubiquitin transferase ARI13),Probable E3 ubiquitin-protein ligase ARI15 (EC 2.3.2.-) (ARIADNE-like protein ARI15) (Protein ariadne homolog 15) (RING-type E3 ubiquitin transferase ARI15),RING/U-box superfamily protein (Zinc finger protein-like protein),RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; multicellular organism development [GO:0007275]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of double fertilization forming a zygote and endosperm [GO:0080155]; single fertilization [GO:0007338],cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] DEVELOPMENTAL STAGE: During male gametophyte development, strongly expressed in microspores and bicellular pollen, but decrease gradually during pollen maturation in tricellular pollen to finally disapear in mature pollen. {ECO:0000269|PubMed:20478994}. TISSUE SPECIFICITY: Mostly expressed in closed flowers and, to a lower extent, in pollen. {ECO:0000269|PubMed:20478994}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12529512}. locus:2160664;,locus:2160574;,locus:2160584;,locus:2160669; AT5G63730,AT5G63750,AT5G63760,AT5G63740 Might act as an E3 ubiquitin-protein ligase or as part of E3 complex which accepts ubiquitin from specific E2 ubiquitin- conjugating enzymes and then transfers it to substrates (By similarity) NA NA NA NA NA NA NA ENOG411EBP7 A0A1P8BD57,Q9FGE1,Q84MC6,A0A1P8BET8 A0A1P8BD57_ARATH,Q9FGE1_ARATH,Q84MC6_ARATH,A0A1P8BET8_ARATH Uncharacterized protein,Gb|AAD11584.1,At5g08360 (Stu1, putative (DUF789)) (Uncharacterized protein At5g08360),Stu1, putative (DUF789) 24821,33736,21159,16058 Uncharacterized protein,Gb|AAD11584.1,At5g08360 (Stu1, putative (DUF789)) (Uncharacterized protein At5g08360),Stu1, putative (DUF789) membrane [GO:0016020] locus:2184322;,locus:2150748; AT5G23380,AT5G08360 Protein of unknown function (DUF789) NA NA NA NA NA NA NA ENOG411EBP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBP1 F9D24.140 Q8S898,Q9M2J3 Q8S898_ARATH,Q9M2J3_ARATH Ubiquitin-specific protease family C19-related protein (Uncharacterized protein At2g05430),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein F9D24.140) 22001,17831 Ubiquitin-specific protease family C19-related protein (Uncharacterized protein At2g05430),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein F9D24.140) peptidase activity [GO:0008233] locus:2042823;,locus:2085480; AT2G05430,AT3G58230 Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EBP0 APK4 Q84JF0,A0A1P8BEE5 APK4_ARATH,A0A1P8BEE5_ARATH Adenylyl-sulfate kinase 4, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 4) (Adenosine-5'-phosphosulfate kinase 4) (APS kinase 4),Adenylyl-sulfate kinase (EC 2.7.1.25) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19304933}. FUNCTION: Catalyzes the synthesis of activated sulfate. Essential for plant reproduction and viability. {ECO:0000269|PubMed:19304933, ECO:0000269|PubMed:19903478}.,FUNCTION: Catalyzes the synthesis of activated sulfate. {ECO:0000256|RuleBase:RU004347}. PATHWAY: Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3.,PATHWAY: Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3. {ECO:0000256|RuleBase:RU004347}. ARA:AT5G67520-MONOMER; Microbial metabolism in diverse environments (01120),Purine metabolism (00230),Sulfur metabolism (00920),Metabolic pathways (01100) 2.7.1.25 34065,27720 Adenylyl-sulfate kinase 4, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 4) (Adenosine-5'-phosphosulfate kinase 4) (APS kinase 4),Adenylyl-sulfate kinase (EC 2.7.1.25) chloroplast [GO:0009507]; cytosol [GO:0005829]; plastid [GO:0009536]; adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; cysteine biosynthetic process [GO:0019344]; hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation [GO:0000103],adenylylsulfate kinase activity [GO:0004020]; ATP binding [GO:0005524]; hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation [GO:0000103] TISSUE SPECIFICITY: Expressed in root vasculature, root tips, leaf epidermal and guard cells, pollen grains and radicle of immature seeds. {ECO:0000269|PubMed:19304933}. locus:2158626; AT5G67520 Catalyzes the synthesis of activated sulfate (By similarity) NA NA NA NA NA NA NA ENOG411EBP3 APUM14,APUM13 Q4PSD1,Q9FMH4 PUM14_ARATH,PUM13_ARATH Pumilio homolog 14 (APUM-14) (AtPUM14),Putative pumilio homolog 13 (APUM-13) (AtPUM13) FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 59449,59937 Pumilio homolog 14 (APUM-14) (AtPUM14),Putative pumilio homolog 13 (APUM-13) (AtPUM13) cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; regulation of translation [GO:0006417],cytoplasm [GO:0005737]; RNA binding [GO:0003723]; regulation of translation [GO:0006417] locus:2167786;,locus:2167771; AT5G43110,AT5G43090 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs (By similarity) NA NA NA NA NA NA NA ENOG411EBP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) NA NA NA NA NA NA NA ENOG411EBP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EGC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGC4 MDC12.22,MDC12.21 Q9FMJ8,Q9FMJ9 Q9FMJ8_ARATH,Q9FMJ9_ARATH At5g63250 (Carbohydrate-binding X8 domain superfamily protein),At5g63240 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein At5g63240) 14658,13972 At5g63250 (Carbohydrate-binding X8 domain superfamily protein),At5g63240 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein At5g63240) locus:2161972;,locus:2161957; AT5G63250,AT5G63240 glycosyl hydrolase family protein 17 NA NA NA NA NA NA NA ENOG411EGC7 Q9FYE0 Q9FYE0_ARATH CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein (RNA binding protein-like) 21577 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein (RNA binding protein-like) Prp19 complex [GO:0000974]; U2-type catalytic step 1 spliceosome [GO:0071006]; U2-type catalytic step 2 spliceosome [GO:0071007]; metal ion binding [GO:0046872]; pre-mRNA binding [GO:0036002]; U6 snRNA binding [GO:0017070]; spliceosomal snRNP assembly [GO:0000387] locus:2146668; AT5G04210 RNA recognition motif (RRM)-containing protein NA NA NA NA NA NA NA ENOG411EGC6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EGC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CONTAINS InterPro DOMAIN s Cystatin-related plant (InterPro IPR006525) NA NA NA NA NA NA NA ENOG411EGCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EGCC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGCB SMR12 O80930 SMR12_ARATH Cyclin-dependent protein kinase inhibitor SMR12 (Protein SIAMESE-RELATED 12) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250|UniProtKB:Q9LZ78}. 19129 Cyclin-dependent protein kinase inhibitor SMR12 (Protein SIAMESE-RELATED 12) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:2040766; AT2G37610 NA NA NA NA NA NA NA NA ENOG411EGCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGCD MQD19.12 Q9FG86 Q9FG86_ARATH At5g43770 (Proline-rich family protein) (Uncharacterized protein At5g43770) 19680 At5g43770 (Proline-rich family protein) (Uncharacterized protein At5g43770) locus:2170847; AT5G43770 NA NA NA NA NA NA NA NA ENOG411EGCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase Os11g0485700 protein A0A0P0Y2U7 A0A0P0Y2U7_ORYSJ Os11g0485700 OSNPB_110485700 ENOG411EGCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0105633 protein (Fragment),Os01g0282866 protein,Os05g0413332 protein (Fragment) A0A0P0VRY2,A0A0P0V183,A0A0P0WMD1 A0A0P0VRY2_ORYSJ,A0A0P0V183_ORYSJ,A0A0P0WMD1_ORYSJ Os03g0105633 OSNPB_030105633,Os01g0282866 OSNPB_010282866,Os05g0413332 OSNPB_050413332 ENOG411EGCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0916100 protein (Fragment) Q0JGM3 Q0JGM3_ORYSJ Os01g0916100 Os01g0916100 OSNPB_010916100 ENOG411EGCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EGCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ThiF family NA NA NA NA NA NA NA ENOG411EGCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UvrD/REP helicase N-terminal domain NA NA NA NA NA NA NA ENOG411EGCN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Antibiotic biosynthesis monooxygenase NA NA NA NA NA NA NA ENOG411EGCQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent PAP2 family NA NA NA NA NA NA NA ENOG411EGCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0351700 protein) (cDNA clone:002-144-E02, full insert sequence) Q10LG4 Q10LG4_ORYSJ Os03g0351700 LOC_Os03g22820 Os03g0351700 OSNPB_030351700 ENOG411EGCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os08g0327800 protein A3BRY8 A3BRY8_ORYSJ Os08g0327800 OsJ_26901 OSNPB_080327800 ENOG411EGCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Viral movement protein (MP) NA NA NA NA NA NA NA ENOG411EGCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Myblike DNAbinding domain containing protein NA NA NA NA NA NA NA ENOG411EGCX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like NA NA NA NA NA NA NA ENOG411EGCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0600200 protein (cDNA clone:001-105-H05, full insert sequence) (cDNA clone:001-203-C08, full insert sequence) Q8H596 Q8H596_ORYSJ OJ1634_B10.120 Os07g0600200 OsJ_25008 OSNPB_070600200 ENOG411DTGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like Os03g0778000 protein (Fragment) Q0DN31 Q0DN31_ORYSJ Os03g0778000 OSNPB_030778000 ENOG411DTGS VOZ1 Q9SGQ0,A0A1P8AQN2 VOZ1_ARATH,A0A1P8AQN2_ARATH Transcription factor VOZ1 (Protein VASCULAR PLANT ONE-ZINC FINGER 1) (AtVOZ1),Vascular plant one zinc finger protein DISRUPTION PHENOTYPE: No visible phenotype. Voz1 and voz2 double mutant displays a late flowering phenotype under long-day conditions. {ECO:0000269|PubMed:22904146}. FUNCTION: Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. 54080,52444 Transcription factor VOZ1 (Protein VASCULAR PLANT ONE-ZINC FINGER 1) (AtVOZ1),Vascular plant one zinc finger protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; cold acclimation [GO:0009631]; defense response to bacterium, incompatible interaction [GO:0009816]; long-day photoperiodism, flowering [GO:0048574]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585]; response to heat [GO:0009408]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. locus:2018738; AT1G28520 one zinc finger protein NA NA NA NA NA NA NA ENOG411DTGR Q8LFN2 Y3037_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 88187 Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2079339; AT3G03770 inactive leucine-rich repeat receptor-like protein kinase Os07g0166700 protein (Putative brassinosteroid LRR receptor kinase protein) (cDNA, clone: J090033M17, full insert sequence),Leucine-rich repeat transmembrane protein kinase, putative, expressed (Os03g0791700 protein) (Putative receptor-like protein kinase) (cDNA clone:J023114M22, full insert sequence),Os03g0791700 protein (Fragment) Q7F0P5,Q852J5,A0A0P0W4Z0 Q7F0P5_ORYSJ,Q852J5_ORYSJ,A0A0P0W4Z0_ORYSJ P0039H02.137 OJ1641_C04.121 Os07g0166700 OsJ_23217 OSNPB_070166700,OSJNBb0060J21.29 LOC_Os03g57780 Os03g0791700 OSNPB_030791700,Os03g0791700 OSNPB_030791700 ENOG411DTGU Q9LHN3,F4J9W8 Q9LHN3_ARATH,F4J9W8_ARATH AT3g18860/MCB22_3 (Transducin family protein / WD-40 repeat family protein),Transducin family protein / WD-40 repeat family protein 84274,84301 AT3g18860/MCB22_3 (Transducin family protein / WD-40 repeat family protein),Transducin family protein / WD-40 repeat family protein cytosol [GO:0005829]; plasmodesma [GO:0009506],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin binding [GO:0043130]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; ubiquitin recycling [GO:0010992] locus:2087921; AT3G18860 Phospholipase A-2-activating Os07g0123700 protein A0A0P0X1Z2 A0A0P0X1Z2_ORYSJ Os07g0123700 OSNPB_070123700 ENOG411DTGT ENF2 Q66GJ0 Q66GJ0_ARATH At1g31410 (Putrescine-binding periplasmic protein-like protein) 58292 At1g31410 (Putrescine-binding periplasmic protein-like protein) chloroplast envelope [GO:0009941]; periplasmic space [GO:0042597]; polyamine binding [GO:0019808]; polyamine transport [GO:0015846] locus:2206194; AT1G31410 Inherit from COG: polyamine binding Os04g0602200 protein (Fragment) Q0JAF3 Q0JAF3_ORYSJ Os04g0602200 Os04g0602200 OSNPB_040602200 ENOG411DTGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein PHLOEM PROTEIN 2-LIKE Os07g0124000 protein,Expressed protein (Os03g0769900 protein) Q0D8V7,Q75KB2 Q0D8V7_ORYSJ,Q75KB2_ORYSJ Os07g0124000 Os07g0124000 OSNPB_070124000,OSJNBb0106M04.4 Os03g0769900 OSNPB_030769900 ENOG411DTGI MPA1 Q8H0S9,F4I3R1,B3H621,F4I3R4,F4I3R0 PSA_ARATH,F4I3R1_ARATH,B3H621_ARATH,F4I3R4_ARATH,F4I3R0_ARATH Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1),Peptidase M1 family protein DISRUPTION PHENOTYPE: Reduced fertility and shorter siliques bearing a lower number of seeds compared with wild-type plants. Cytogenetic characterization of meiosis in the mutant line reveals that both male and female meiosis are defective. {ECO:0000269|PubMed:15522847}. FUNCTION: Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic events essential for cell growth and viability. Plays an essential role during prophase I of meiosis. Required for correct meiotic reconbination in both male and female gametophytes. {ECO:0000269|PubMed:15522847, ECO:0000269|PubMed:17151235}. 3.4.11.14 99159,109407,106106,103466,110814 Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1),Peptidase M1 family protein cytoplasm [GO:0005737]; metalloaminopeptidase activity [GO:0070006]; peptide binding [GO:0042277]; zinc ion binding [GO:0008270]; peptide catabolic process [GO:0043171]; proteolysis [GO:0006508],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; metallopeptidase activity [GO:0008237]; zinc ion binding [GO:0008270]; response to cadmium ion [GO:0046686],metallopeptidase activity [GO:0008237]; zinc ion binding [GO:0008270] DEVELOPMENTAL STAGE: Expressed in meiocytes during meotic prophase I. {ECO:0000269|PubMed:15522847}. locus:2026694; AT1G63770 Domain of unknown function (DUF3458) Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S),Os08g0562700 protein (Fragment) B7EA73,A0A0P0XIV5,A0A0P0XJC4 PSA_ORYSJ,A0A0P0XIV5_ORYSJ,A0A0P0XJC4_ORYSJ Os08g0562700 LOC_Os08g44860 P0543D10.15,Os08g0562700 OSNPB_080562700 ENOG411DTGJ GEN1,AtGEN1 Q9LPD2,A0A1P8APG4,F4HU71 GENL1_ARATH,A0A1P8APG4_ARATH,F4HU71_ARATH Flap endonuclease GEN-like 1 (EC 3.1.-.-),5'-3' exonuclease family protein FUNCTION: Endonuclease which cleaves flap structures at the junction between single-stranded DNA and double-stranded DNA. {ECO:0000250}. 3.1.-.- 67193,60486,67094 Flap endonuclease GEN-like 1 (EC 3.1.-.-),5'-3' exonuclease family protein nucleus [GO:0005634]; crossover junction endodeoxyribonuclease activity [GO:0008821]; double-stranded DNA binding [GO:0003690]; flap endonuclease activity [GO:0048256]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697]; DNA repair [GO:0006281]; pollen development [GO:0009555],DNA binding [GO:0003677]; exonuclease activity [GO:0004527]; DNA repair [GO:0006281] locus:2025447; AT1G01880 Flap endonuclease GEN-like Flap endonuclease GEN-like 1 (OsGEN-L) (Protein OsGEN-like) (EC 3.1.-.-) (OsRAD) Q64MA3 GENL1_ORYSJ RAD GEN1 Os09g0521900 LOC_Os09g35000 OsJ_016655 OsJ_17430 OSJNOa273B05.7 DISRUPTION PHENOTYPE: Plants develop abnormal anthers with degraded microspores, causing male sterility. {ECO:0000269|PubMed:15792960}. FUNCTION: Endonuclease which cleaves flap structures at the junction between single-stranded DNA and double-stranded DNA. Possesses both single-stranded and double-stranded DNA-binding activities. Involved in early microspore development, but does not alter meiosis or tapetal cells development (PubMed:15792960, PubMed:22247560). Possesses Holliday junction (HJ) resolvase activity in vitro. Cleaves HJ at symmetrically related sites of the branch point (PubMed:22247560). {ECO:0000269|PubMed:15792960, ECO:0000269|PubMed:22247560}. ENOG411DTGC LECRK91 Q9LXA5 LRK91_ARATH L-type lectin-domain containing receptor kinase IX.1 (LecRK-IX.1) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici associated with reduced expression of some defense genes (e.g. PR1, PDF1.2, CYP71B15 and CYP81F2). However, normal defense responses to the fungal pathogen Alternaria brassicicola and to the bacterial pathogen Pseudomonas syringae (PubMed:25083911, PubMed:26011556). Susceptibility to P. brassicae and P. capsici is enhanced in plants impaired in LECRK91 and LECRK92 (PubMed:26011556). {ECO:0000269|PubMed:25083911, ECO:0000269|PubMed:26011556}. FUNCTION: Promotes hydrogen peroxide H(2)O(2) production and cell death. {ECO:0000269|PubMed:26011556}.; FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:25083911, ECO:0000269|PubMed:26011556}. MISCELLANEOUS: Both lectin domain and kinase activity are required for resistance to oomycetes, but only the lectin domain is required to trigger cell death. {ECO:0000269|PubMed:26011556}. 2.7.11.1 72005 L-type lectin-domain containing receptor kinase IX.1 (LecRK-IX.1) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to oomycetes [GO:0002229]; positive regulation of cell death [GO:0010942]; positive regulation of hydrogen peroxide metabolic process [GO:0010726] locus:2142499; AT5G10530 L-type lectin-domain containing receptor kinase Os07g0569550 protein (Putative lectin-like protein kinase),Os01g0779300 protein (Putative lectin-like receptor kinase 11) (cDNA clone:J033068N04, full insert sequence),Os10g0184871 protein Q7XIH7,Q94DZ6,A0A0P0XSR8 Q7XIH7_ORYSJ,Q94DZ6_ORYSJ,A0A0P0XSR8_ORYSJ OJ1019_E02.19 Os07g0569550 OSNPB_070569550,Os01g0779300 OSNPB_010779300 P0010B10.12,Os10g0184871 OSNPB_100184871 ENOG411DTGF PCMP-H58 Q9FK33 PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390, chloroplastic Embryo defective; Preglobular-D. Meinke-2011 79765 Pentatricopeptide repeat-containing protein At5g50390, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2177537; AT5G50390 Pentatricopeptide repeat-containing protein Os08g0138600 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q6ZKI7 Q6ZKI7_ORYSJ Os08g0138600 OJ1119_D01.10 OSNPB_080138600 ENOG411E2T0 ATL15 Q9SK92 ATL15_ARATH E3 ubiquitin-protein ligase ATL15 (EC 2.3.2.27) (RING-H2 finger protein ATL15) (RING-type E3 ubiquitin transferase ATL15) FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro. {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 42226 E3 ubiquitin-protein ligase ATL15 (EC 2.3.2.27) (RING-H2 finger protein ATL15) (RING-type E3 ubiquitin transferase ATL15) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; response to L-ascorbic acid [GO:0033591]; response to light stimulus [GO:0009416] locus:2009527; AT1G22500 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E2T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein PRA1 family protein Q7Y1J0 Q7Y1J0_ORYSJ OSJNBa0094F01.3 LOC_Os03g58410 Os03g0798400 OSNPB_030798400 FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. ENOG411DTG9 Q8GYE8 Q8GYE8_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At5g26180) (Uncharacterized protein At5g26180/T19G15_30) 63174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At5g26180) (Uncharacterized protein At5g26180/T19G15_30) nucleolus [GO:0005730]; RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; rRNA base methylation [GO:0070475] locus:2179749; AT5G26180 NOL1 NOP2 sun family protein Os02g0217800 protein B9F4A8 B9F4A8_ORYSJ Os02g0217800 OsJ_05902 OSNPB_020217800 ENOG411DTG1 Q9LQI8,F4JFS2,F4IDB4,F4JFS3,A0A1I9LS39,F4IDB3 Q9LQI8_ARATH,F4JFS2_ARATH,F4IDB4_ARATH,F4JFS3_ARATH,A0A1I9LS39_ARATH,F4IDB3_ARATH F28G4.18 protein (LOW protein: protein phosphatase 1 regulatory subunit-like protein),GPI-anchored adhesin-like protein,COP1-interacting protein-like protein 119234,140028,130002,140961,136724,128010 F28G4.18 protein (LOW protein: protein phosphatase 1 regulatory subunit-like protein),GPI-anchored adhesin-like protein,COP1-interacting protein-like protein plasma membrane [GO:0005886] locus:2018789;,locus:4010713746;,locus:2193952; AT1G17360,AT3G14172,AT1G72410 expressed protein Os07g0616000 protein (cDNA clone:J013055F14, full insert sequence),Os07g0616000 protein (Fragment) Q0D4N6,A0A0P0X8R4 Q0D4N6_ORYSJ,A0A0P0X8R4_ORYSJ Os07g0616000 Os07g0616000 OSNPB_070616000,Os07g0616000 OSNPB_070616000 ENOG411E2T5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8) Q6H725 Q6H725_ORYSJ Os02g0199300 OsJ_05780 OSNPB_020199300 P0026H03.28 ENOG411DTG3 Q9XIC8,F4HUX0 Q9XIC8_ARATH,F4HUX0_ARATH F23M19.10 (Regulator of Vps4 activity in the MVB pathway protein),Regulator of Vps4 activity in the MVB pathway protein R-ATH-6798695; 68959,72574 F23M19.10 (Regulator of Vps4 activity in the MVB pathway protein),Regulator of Vps4 activity in the MVB pathway protein protein transport [GO:0015031] locus:2026150; AT1G34220 Regulator of Vps4 activity in the MVB pathway Os08g0175200 protein,Os08g0175200 protein (Fragment) Q6Z4T7,A0A0N7KPC8 Q6Z4T7_ORYSJ,A0A0N7KPC8_ORYSJ Os08g0175200 OJ1134_B10.7 OsJ_26225 OSJNBa0054L03.38 OSNPB_080175200,Os08g0175200 OSNPB_080175200 ENOG411DTG2 F7P12.13 Q9LNK3 Q9LNK3_ARATH F12K21.25 (Leucine-rich repeat receptor-like protein kinase) (Leucine-rich repeat transmembrane protein kinase family protein) 106108 F12K21.25 (Leucine-rich repeat receptor-like protein kinase) (Leucine-rich repeat transmembrane protein kinase family protein) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2009288; AT1G34420 Leucine-rich repeat Os11g0197000 protein,Leucine Rich Repeat family protein, expressed (Os12g0182300 protein) (cDNA clone:J013110A16, full insert sequence) B9G9U6,Q2QWU6 B9G9U6_ORYSJ,Q2QWU6_ORYSJ Os11g0197000 OsJ_33264 OSNPB_110197000,LOC_Os12g08180 Os12g0182300 OSNPB_120182300 ENOG411DTG5 ANX2,ANX1 Q3E8W4,Q9SR05 ANX2_ARATH,ANX1_ARATH Receptor-like protein kinase ANXUR2 (EC 2.7.11.1),Receptor-like protein kinase ANXUR1 (EC 2.7.11.1) DISRUPTION PHENOTYPE: No effect on male fertility and pollen germination, but siliques slightly shorter. Anx1 and anx2 double mutants show defects in male gametophytes due to premature pollen tube rupture. {ECO:0000269|PubMed:19646876}. Double mutant pollen tubes cease their growth and burst in vitro and fail to reach the female gametophytes in vivo. FUNCTION: Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell. {ECO:0000269|PubMed:19646876}. MISCELLANEOUS: Male paralog of FERONIA, a female factor expressed in synergid cells that controls pollen tube behavior.; MISCELLANEOUS: Named Anxur after the husband of the Etruscan goddess of fertility Feronia. 2.7.11.1 94297,94048 Receptor-like protein kinase ANXUR2 (EC 2.7.11.1),Receptor-like protein kinase ANXUR1 (EC 2.7.11.1) apical plasma membrane [GO:0016324]; integral component of membrane [GO:0016021]; pollen tube tip [GO:0090404]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; single fertilization [GO:0007338] TISSUE SPECIFICITY: Expressed in pollen, but not in pistils or seedlings. {ECO:0000269|PubMed:19646876}. locus:2148830;,locus:2084953; AT5G28680,AT3G04690 receptor-like protein kinase Os05g0280700 protein,Os05g0280700 protein (Fragment) Q75IG6,A0A0P0WK49 Q75IG6_ORYSJ,A0A0P0WK49_ORYSJ Os05g0280700 Os05g0280700 OsJ_17900 OSNPB_050280700 P0048F12.14,Os05g0280700 OSNPB_050280700 ENOG411DTG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os09g0431300 protein A0A0N7KQU7 A0A0N7KQU7_ORYSJ Os09g0431300 OSNPB_090431300 ENOG411DTG7 PP2AA1,PP2AA3,PP2AA2 Q38845,Q38951,Q38950,A0A1P8AMM6,F4HQR5,F4JA59 2AAA_ARATH,2AAG_ARATH,2AAB_ARATH,A0A1P8AMM6_ARATH,F4HQR5_ARATH,F4JA59_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (AtA alpha) (PP2A, subunit A, alpha isoform) (PR-65 A) (Protein ROOTS CURL IN NAPHTHYLPHTHALAMIC ACID 1) (Protein enhancer of ethylene-response 1),Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform (AtA gamma) (PP2A, subunit A, gamma isoform),Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (AtA beta) (PP2A, subunit A, beta isoform),Protein phosphatase 2A subunit A3,Protein phosphatase 2A subunit A2 Short hypocotyl and roots; Slightly reduced root curling; Abnormal apical hook in the dark-A. DeLong-1999 FUNCTION: The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling. The holoenzyme composed of PP2AA1, PP2A4 and B'ZETA or B'ETA acts as negative regulator of plant innate immunity by controlling BAK1 phosphorylation state and activation in surface-localized immune receptor complexes (PubMed:25085430). {ECO:0000269|PubMed:10607292, ECO:0000269|PubMed:11161061, ECO:0000269|PubMed:11449059, ECO:0000269|PubMed:12417706, ECO:0000269|PubMed:12787251, ECO:0000269|PubMed:14973165, ECO:0000269|PubMed:25085430, ECO:0000269|PubMed:8641277}.,FUNCTION: The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity. {ECO:0000269|PubMed:14973165}.,FUNCTION: The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity. Associates with the serine/threonine-protein phosphatase PP2A catalytic subunit C and regulatory subunit B' to positively regulates beta-oxidation of fatty acids and protoauxins in peroxisomes by dephosphorylating peroxisomal beta-oxidation-related proteins (PubMed:25489022). {ECO:0000269|PubMed:14973165, ECO:0000269|PubMed:25489022}. MISCELLANEOUS: Due to the stability of its transcription, PubMed:16166256 proposed this gene as a reference gene for transcript normalization. R-ATH-113501;R-ATH-198753;R-ATH-202670;R-ATH-5673000;R-ATH-5675221;R-ATH-69231;R-ATH-69273;R-ATH-975957; 65494,65517,65598,45871,59999,60967 Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (AtA alpha) (PP2A, subunit A, alpha isoform) (PR-65 A) (Protein ROOTS CURL IN NAPHTHYLPHTHALAMIC ACID 1) (Protein enhancer of ethylene-response 1),Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform (AtA gamma) (PP2A, subunit A, gamma isoform),Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (AtA beta) (PP2A, subunit A, beta isoform),Protein phosphatase 2A subunit A3,Protein phosphatase 2A subunit A2 cell wall [GO:0005618]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein phosphatase type 2A complex [GO:0000159]; abscisic acid-activated signaling pathway [GO:0009738]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; regulation of protein dephosphorylation [GO:0035304]; regulation of stomatal movement [GO:0010119]; response to ethylene [GO:0009723],cell wall [GO:0005618]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; protein phosphatase type 2A complex [GO:0000159]; regulation of phosphorylation [GO:0042325],cytosol [GO:0005829]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; regulation of phosphorylation [GO:0042325]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Mostly expressed in cell-dividing tissues such as apical meristems. Ubiquitous, with higher levels in roots and flowers (at protein level). {ECO:0000269|PubMed:10607292, ECO:0000269|PubMed:14973165, ECO:0000269|PubMed:8756607}.,TISSUE SPECIFICITY: Expressed ubiquitously at stable levels. However, higher protein levels in roots and flowers (at protein level). {ECO:0000269|PubMed:14973165, ECO:0000269|PubMed:16166256}.,TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots and flowers (at protein level). {ECO:0000269|PubMed:14973165}. locus:2031165;,locus:2205354;,locus:2085994; AT1G25490,AT1G13320,AT3G25800 serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A Os09g0249700 protein (Phosphatase 2A regulatory A subunit) (cDNA clone:J023031G02, full insert sequence),Os09g0249700 protein (Fragment) Q6K4K9,A0A0P0XJR1 Q6K4K9_ORYSJ,A0A0P0XJR1_ORYSJ Os09g0249700 OJ1116_H10.3 OJ1695_A02.24 OsJ_28521 OSNPB_090249700,Os09g0249700 OSNPB_090249700 ENOG411E2T7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histidine-containing phosphotransfer protein Pseudo histidine-containing phosphotransfer protein 5 (OsHpt5),Os05g0521300 protein (Fragment) Q6F303,A0A0P0WPM8,A0A0P0WPZ8 PHP5_ORYSJ,A0A0P0WPM8_ORYSJ,A0A0P0WPZ8_ORYSJ PHP5 Os05g0521300 LOC_Os05g44570 P0483D07.18,Os05g0521300 OSNPB_050521300 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, sterility and small grain phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction. {ECO:0000250|UniProtKB:Q8L9T7}. ENOG411E2TB NFYB8,NFYB10,NF-YB10 Q8VYK4,Q67XJ2,A0A1I9LSP5,A0A1I9LSP8 NFYB8_ARATH,NFYBA_ARATH,A0A1I9LSP5_ARATH,A0A1I9LSP8_ARATH Nuclear transcription factor Y subunit B-8 (AtNF-YB-8),Nuclear transcription factor Y subunit B-10 (AtNF-YB-10),Nuclear factor Y, subunit B10 FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. 18998,19155,17063,13769 Nuclear transcription factor Y subunit B-8 (AtNF-YB-8),Nuclear transcription factor Y subunit B-10 (AtNF-YB-10),Nuclear factor Y, subunit B10 nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; glucosinolate metabolic process [GO:0019760]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.,TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}. locus:2061789;,locus:2083941; AT2G37060,AT3G53340 Nuclear transcription factor Y subunit Nuclear transcription factor Y subunit B-3 (OsNF-YB-3) (Transcriptional activator HAP3B),Os05g0463800 protein Q60EQ4,A0A0P0WNF0 NFYB3_ORYSJ,A0A0P0WNF0_ORYSJ NFYB3 HAP3B Os05g0573500 LOC_Os05g49780 OJ1280_A04.9,Os05g0463800 OSNPB_050463800 FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}. ENOG411E2TG B3H6Z2 B3H6Z2_ARATH Cystathionine beta-synthase (CBS) family protein 21131 Cystathionine beta-synthase (CBS) family protein locus:4515102654; AT1G47271 CBS domain-containing protein NA NA NA NA NA NA NA ENOG411E2TF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 OSJNBa0088H09.12 protein (Os04g0685000 protein) (cDNA clone:002-156-B01, full insert sequence),Os08g0102400 protein Q7XPU4,Q69U68 Q7XPU4_ORYSJ,Q69U68_ORYSJ Os04g0685000 OsJ_16691 OSJNBa0088H09.12 OSNPB_040685000,Os08g0102400 OsJ_25728 OSNPB_080102400 P0015C07.12 ENOG411E2YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 ERF domain-containing transcription factor NA NA NA NA NA NA NA ENOG411EMC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain NA NA NA NA NA NA NA ENOG411EMC6 F4IBQ3 F4IBQ3_ARATH D-isomer specific 2-hydroxyacid dehydrogenase family protein 41449 D-isomer specific 2-hydroxyacid dehydrogenase family protein NAD binding [GO:0051287]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616] locus:2207046; AT1G72190 D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain Os07g0264100 protein (cDNA clone:001-038-B08, full insert sequence) (cDNA clone:006-306-C01, full insert sequence) (cDNA clone:J013002F16, full insert sequence),Os07g0263400 protein Q0D7C9,A0A0P0X499 Q0D7C9_ORYSJ,A0A0P0X499_ORYSJ Os07g0264100 Os07g0264100 OsJ_23776 OSNPB_070264100,Os07g0263400 OSNPB_070263400 ENOG411EMC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Glutamate receptor 3.1 (Ligand-gated ion channel 3.1),Os04g0585200 protein,Os04g0585200 protein (Fragment) Q7XP59,A0A0P0WE72,A0A0P0WDZ4 GLR31_ORYSJ,A0A0P0WE72_ORYSJ,A0A0P0WDZ4_ORYSJ GLR3.1 Os04g0585200 LOC_Os04g49570 OSJNBa0013K16.8,Os04g0585200 OSNPB_040585200 DISRUPTION PHENOTYPE: Plants are defective in root elongation and show reduced mitotic activity and increased cell death in the root apical meristem (RAM). {ECO:0000269|PubMed:16377757}. FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. Involved in root development. May regulate cell proliferation and cell death in the root apex. {ECO:0000269|PubMed:16377757}. ENOG411EMC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Glutamate receptor,Os09g0485700 protein,Os06g0246600 protein (Fragment) Q0D972,B9G494,A0A0P0WV25 Q0D972_ORYSJ,B9G494_ORYSJ,A0A0P0WV25_ORYSJ Os07g0103100 Os07g0103100 OsJ_22783 OSNPB_070103100,Os09g0485700 OsJ_29815 OSNPB_090485700,Os06g0246600 OSNPB_060246600 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. ENOG411EMCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) Cytochrome b561 and DOMON domain-containing protein,Os03g0194900 protein Q8H7W7,A0A0P0VUC6 Q8H7W7_ORYSJ,A0A0P0VUC6_ORYSJ LOC_Os03g09900 Os03g0194900 OSJNBa0064E16.10 OSNPB_030194900,Os03g0194900 OSNPB_030194900 ENOG411EH4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0757800 protein Q0DXF1 Q0DXF1_ORYSJ Os02g0757800 Os02g0757800 OSNPB_020757800 ENOG411EMCB FAS1 Q9SXY0,F4IBG1 FAS1_ARATH,F4IBG1_ARATH Chromatin assembly factor 1 subunit FAS1 (CAF-1 subunit FAS1) (CAF-1 p150 homolog) (Protein FASCIATA 1),Chromatin assembly factor-1 (FASCIATA1) (FAS1) DISRUPTION PHENOTYPE: Fasciated plants with broad, flat stems and disrupted phyllotaxy. Shoot apical meristem enlargement and altered floral development. Reduced heterochromatin content, more open conformation of euchromatin and dramatic increase of homologous recombination. {ECO:0000269|PubMed:11163246, ECO:0000269|PubMed:16980538}. smaller than wild type and develop fasciation. Slow growth; Short roots; Fasciated stems and inflorescences; Abnormal leaf morphology; Abnormal phyllotaxy; Decreased petal and stamen number; Narrow sepals and petals; Reduced fertility; Abnormal SAM and RAM morphology-T. Araki-2001 FUNCTION: Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. Assembles histone octamers onto replicating DNA in vitro. Required for several aspects of development, including seedling growth and leaf hair differentiation. Plays a critical role in the organization of shoot apical meristem (SAM) and root apical meristem (RAM) during postembryonic development by facilitating stable maintenance of gene expression states. Seems not required to maintain transcriptional repression of heterochromatic genes. Involved in heterologous recombination. May repress endocycle. {ECO:0000269|PubMed:11163246, ECO:0000269|PubMed:16452472, ECO:0000269|PubMed:16980538, ECO:0000269|PubMed:17021044, ECO:0000269|PubMed:17110925, ECO:0000269|PubMed:17351056, ECO:0000269|PubMed:18045841, ECO:0000269|PubMed:20699390}. 93347,92380 Chromatin assembly factor 1 subunit FAS1 (CAF-1 subunit FAS1) (CAF-1 p150 homolog) (Protein FASCIATA 1),Chromatin assembly factor-1 (FASCIATA1) (FAS1) CAF-1 complex [GO:0033186]; nucleus [GO:0005634]; histone binding [GO:0042393]; cell proliferation [GO:0008283]; chromatin organization [GO:0006325]; covalent chromatin modification [GO:0016569]; DNA recombination [GO:0006310]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724]; heterochromatin assembly [GO:0031507]; leaf development [GO:0048366]; nucleosome assembly [GO:0006334]; pollen development [GO:0009555]; positive regulation of cell cycle [GO:0045787]; regulation of meristem structural organization [GO:0009934]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Expressed in the shoot apical meristem, young leaf primordia, root tip and first lateral root primordium at the hypocotyl/root junction. {ECO:0000269|PubMed:11163246}. locus:2034183; AT1G65470 Chromatin assembly factor 1 subunit A NA NA NA NA NA NA NA ENOG411EH4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative tRNA binding domain NA NA NA NA NA NA NA ENOG411EH4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4K RGF6 Q93VK8,A0A1P8B471 RGF6_ARATH,A0A1P8B471_ARATH Root meristem growth factor 6 (AtRGF6),Root meristem growth factor FUNCTION: Maintains the postembryonic root stem cell niche. {ECO:0000269|PubMed:20798316}. 9541,16411 Root meristem growth factor 6 (AtRGF6),Root meristem growth factor extracellular space [GO:0005615]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; lateral root development [GO:0048527]; positive gravitropism [GO:0009958]; positive regulation of cell proliferation [GO:0008284]; regulation of auxin polar transport [GO:2000012]; regulation of protein localization [GO:0032880]; root system development [GO:0022622],integral component of membrane [GO:0016021] locus:505006482; AT4G16515 NA NA NA NA NA NA NA NA ENOG411EMCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 Os05g0565100 protein (cDNA clone:001-113-C06, full insert sequence) Q6AUF4 Q6AUF4_ORYSJ Os05g0565100 Os05g0565100 OsJ_19562 OSJNBb0053D02.17 OSNPB_050565100 ENOG411EMCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411EH4I Q2V4I9 DF275_ARATH Defensin-like protein 275 9586 Defensin-like protein 275 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023100; AT1G35435 NA NA NA NA NA NA NA NA ENOG411EMCR Q9SJ74 B561G_ARATH Cytochrome b561 and DOMON domain-containing protein At2g04850 (Protein b561A.tha7) FUNCTION: May act as a catecholamine-responsive trans-membrane electron transporter. {ECO:0000269|PubMed:15022831}. 43876 Cytochrome b561 and DOMON domain-containing protein At2g04850 (Protein b561A.tha7) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2049254; AT2G04850 Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411EH4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase rRNA N-glycosidase (EC 3.2.2.22) A0A0P0X332 A0A0P0X332_ORYSJ Os07g0189000 OSNPB_070189000 ENOG411EH49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0614800 protein Q9FTH4 Q9FTH4_ORYSJ Os01g0614800 OsJ_02602 OSNPB_010614800 P0410E01.40 ENOG411EH40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0361700 protein A0A0P0XM71 A0A0P0XM71_ORYSJ Os09g0361700 OSNPB_090361700 ENOG411E364 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) Os05g0433400 protein (Fragment),Os05g0434600 protein,Os05g0433800 protein (Fragment),Os05g0435100 protein A0A0P0WMT6,A0A0N7KKU4,A0A0P0WMW8,A0A0P0WMN7 A0A0P0WMT6_ORYSJ,A0A0N7KKU4_ORYSJ,A0A0P0WMW8_ORYSJ,A0A0P0WMN7_ORYSJ Os05g0433400 OSNPB_050433400,Os05g0434600 OSNPB_050434600,Os05g0433800 OSNPB_050433800,Os05g0435100 OSNPB_050435100 ENOG411E1HV F4HPB7 F4HPB7_ARATH Uncharacterized protein 22046 Uncharacterized protein locus:2200600; AT1G26750 NA Expressed protein (Os12g0209100 protein) Q2QW42 Q2QW42_ORYSJ Os12g0209100 LOC_Os12g10650 OsJ_35562 OSNPB_120209100 ENOG411E1HU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein 5NG4-like NA NA NA NA NA NA NA ENOG411E1HQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1785) Protein argonaute 18 (OsAGO18),Os07g0471300 protein (Fragment) Q69UP6,A0A0P0X663 AGO18_ORYSJ,A0A0P0X663_ORYSJ AGO18 Os07g0471300 LOC_Os07g28850 OJ1103_E04.115 P0675B10.105,Os07g0471300 OSNPB_070471300 FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411E1HX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0575700 protein (Putative receptor-type protein kinase LRK1) Q7F226 Q7F226_ORYSJ OJ1562_B11.130 Os07g0575700 OsJ_24850 OSNPB_070575700 ENOG411E1HY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os01g0795400 protein (Fragment),Os01g0795200 protein Q0JIK4,Q0JIK5 Q0JIK4_ORYSJ,Q0JIK5_ORYSJ Os01g0795400 Os01g0795400 OSNPB_010795400,Os01g0795200 Os01g0795200 OSNPB_010795200 ENOG411E1HD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA synthetases class I (I L M and V) Methionyl-tRNA synthetase, putative, expressed (Os10g0400100 protein) (cDNA clone:J013098H24, full insert sequence) Q338J4 Q338J4_ORYSJ LOC_Os10g26050 Os10g0400100 OsJ_31437 OSNPB_100400100 ENOG411E1HE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0100700 protein (Fragment),Os01g0110500 protein (Putative LRR receptor-like protein kinase) (cDNA clone:J033024N16, full insert sequence) Q0DLI4,Q9ASK4,A0A0P0WGR8 Q0DLI4_ORYSJ,Q9ASK4_ORYSJ,A0A0P0WGR8_ORYSJ Os05g0100700 Os05g0100700 OSNPB_050100700,Os01g0110500 Os01g0110500 OsJ_00083 OSNPB_010110500 P0439B06.10,Os05g0100700 OSNPB_050100700 ENOG411E1HN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3133) Os07g0680600 protein (cDNA clone:J033117L20, full insert sequence),Os07g0680600 protein (Fragment) Q7XHX2,A0A0P0XA76 Q7XHX2_ORYSJ,A0A0P0XA76_ORYSJ Os07g0680600 OJ1205_F02.25 OSJNBa0008J01.12 OSNPB_070680600,Os07g0680600 OSNPB_070680600 ENOG411E1HJ MCK7.15 Q9FHB2,A0A1P8B9N7,A0A1P8B9P0 Y5828_ARATH,A0A1P8B9N7_ARATH,A0A1P8B9P0_ARATH Putative B3 domain-containing protein At5g58280,AP2/B3-like transcriptional factor family protein 31674,35189,35317 Putative B3 domain-containing protein At5g58280,AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2161228; AT5G58280 B3 domain-containing protein B3 domain-containing protein Os05g0481400 Q5KQI4 Y5814_ORYSJ Os05g0481400 LOC_Os05g40280 OSJNBa0095J22.6 ENOG411E1HH Q9FYM0 Q9FYM0_ARATH F21J9.9 (HXXXD-type acyl-transferase family protein) ARA:AT1G24430-MONOMER; 49288 F21J9.9 (HXXXD-type acyl-transferase family protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2024036; AT1G24430 Transferase family NA NA NA NA NA NA NA ENOG411E1HI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os03g0582100 protein Q0DQL5 Q0DQL5_ORYSJ Os03g0582100 Os03g0582100 OSNPB_030582100 ENOG411E0A0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0504200 protein (Putative disease resistance protein I2),Os04g0378575 protein Q6K655,B9FES9 Q6K655_ORYSJ,B9FES9_ORYSJ Os02g0504200 OJ1003_F04.22 OsJ_06842 OSNPB_020504200,Os04g0378575 OsJ_14506 OSNPB_040378575 ENOG411E0A1 Q8RWQ2,F4JCX1,F4JCX0 Q8RWQ2_ARATH,F4JCX1_ARATH,F4JCX0_ARATH At3g54435 (Glycoside hydrolase family 2 protein),Glycoside hydrolase family 2 protein ARA:AT3G54440-MONOMER; R-ATH-2024096;R-ATH-2160916;R-ATH-6798695; Galactose metabolism (00052),Sphingolipid metabolism (00600),Other glycan degradation (00511),Metabolic pathways (01100) 125412,126827,125511 At3g54435 (Glycoside hydrolase family 2 protein),Glycoside hydrolase family 2 protein beta-galactosidase complex [GO:0009341]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],beta-galactosidase complex [GO:0009341]; chloroplast [GO:0009507]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; lactose catabolic process [GO:0005990] locus:504955713; AT3G54440 K01190 beta-galactosidase EC 3.2.1.23 Os01g0952600 protein (Putative beta-galactosidase),Os01g0952600 protein (Fragment) Q5JKZ9,A0A0P0VD92 Q5JKZ9_ORYSJ,A0A0P0VD92_ORYSJ Os01g0952600 OsJ_04784 OSNPB_010952600 P0431G06.11,Os01g0952600 OSNPB_010952600 ENOG411E0A2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (By similarity) Auxin-responsive protein IAA13 (Indoleacetic acid-induced protein 13),Auxin-responsive protein (Fragment) Q10D34,A0A0P0W3D8 IAA13_ORYSJ,A0A0P0W3D8_ORYSJ IAA13 IAA1 Os03g0742900 LOC_Os03g53150 OJ1365_D05.5 OsJ_012025,Os03g0742900 OSNPB_030742900 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. ENOG411E0A3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411E0A4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Possible lysine decarboxylase NA NA NA NA NA NA NA ENOG411E0A5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb family transcription factor-like (Os02g0241200 protein) Q6ER41 Q6ER41_ORYSJ Os02g0241200 OsJ_06034 OSJNBa0082C09.24 OSNPB_020241200 ENOG411E0A6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411E0A7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyruvate kinase Pyruvate kinase (EC 2.7.1.40) Q84R73 Q84R73_ORYSJ Os03g0672300 LOC_Os03g46910 Os03g0672300 OSJNBb0113I20.13 OSNPB_030672300 ENOG411E0A8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prolyl oligopeptidase N-terminal beta-propeller domain OSJNBa0084K11.14 protein (Os04g0561500 protein) (cDNA clone:J023028J20, full insert sequence) Q7XSQ2 Q7XSQ2_ORYSJ Os04g0561500 OsJ_15773 OSJNBa0084K11.14 OSNPB_040561500 ENOG411E0A9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B8 (Beta-expansin-8) (OsEXPB8) (OsaEXPb1.11) Q10T32 EXPB8_ORYSJ EXPB8 Os03g0102500 LOC_Os03g01260 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E0AA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_TTF Os05g0311600 protein (Fragment) Q0DJ97 Q0DJ97_ORYSJ Os05g0311600 Os05g0311600 OSNPB_050311600 ENOG411E0AB Q8W497 Q8W497_ARATH Uncharacterized protein At2g19870; F6F22.10 (tRNA/rRNA methyltransferase (SpoU) family protein) 65560 Uncharacterized protein At2g19870; F6F22.10 (tRNA/rRNA methyltransferase (SpoU) family protein) chloroplast [GO:0009507]; RNA binding [GO:0003723]; rRNA (guanosine-2'-O-)-methyltransferase activity [GO:0070039]; enzyme-directed rRNA 2'-O-methylation [GO:0000453] locus:2051910; AT2G19870 RNA 2'-O ribose methyltransferase substrate binding Os01g0742000 protein (Fragment) Q0JJF5 Q0JJF5_ORYSJ Os01g0742000 Os01g0742000 OSNPB_010742000 ENOG411E0AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase Os10g0136500 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J013006F14, full insert sequence) Q7XH16 Q7XH16_ORYSJ LOC_Os10g04730 Os10g0136500 OSJNBa0087H07.9 OSNPB_100136500 ENOG411E0AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60S ribosomal protein Os03g0332500 protein (Fragment) A0A0P0VX44 A0A0P0VX44_ORYSJ Os03g0332500 OSNPB_030332500 ENOG411E0AE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Glutaredoxin-like (Os02g0748800 protein),Glutaredoxin-like (Os06g0226100 protein) Q6YUW0,Q67X21 Q6YUW0_ORYSJ,Q67X21_ORYSJ Os02g0748800 OsJ_08385 OSJNBa0078N11.37 OSNPB_020748800,Os06g0226100 Os06g0226100 OsJ_20667 OSNPB_060226100 P0690H04.17 ENOG411E0AF ALDH3F1 Q70E96 AL3F1_ARATH Aldehyde dehydrogenase family 3 member F1 (EC 1.2.1.3) ARA:AT4G36250-MONOMER; R-ATH-1660661;R-ATH-211945;R-ATH-389599;R-ATH-6798695; 1.2.1.3 53615 Aldehyde dehydrogenase family 3 member F1 (EC 1.2.1.3) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; cellular aldehyde metabolic process [GO:0006081] TISSUE SPECIFICITY: Constituively expressed at low levels. {ECO:0000269|PubMed:15830124}. locus:2122224; AT4G36250 Aldehyde dehydrogenase Aldehyde dehydrogenase,Os02g0647900 protein (Fragment) Q6H627,Q0DZ46,Q7XR89,A0A0P0VMQ0 Q6H627_ORYSJ,Q0DZ46_ORYSJ,Q7XR89_ORYSJ,A0A0P0VMQ0_ORYSJ Os02g0646500 Os02g0646500 OSNPB_020646500 P0030D07.30 P0519A12.15,Os02g0647900 Os02g0647900 OsJ_07720 OSNPB_020647900,Os04g0540600 OSJNBa0011L07.12 OSNPB_040540600,Os02g0647900 OSNPB_020647900 ENOG411E0AG PBC1,PBC2 Q9XI05,O81153 PSB3A_ARATH,PSB3B_ARATH Proteasome subunit beta type-3-A (EC 3.4.25.1) (20S proteasome beta subunit C-1) (Proteasome component T),Proteasome subunit beta type-3-B (EC 3.4.25.1) (20S proteasome beta subunit C-2) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 22798,22759 Proteasome subunit beta type-3-A (EC 3.4.25.1) (20S proteasome beta subunit C-1) (Proteasome component T),Proteasome subunit beta type-3-B (EC 3.4.25.1) (20S proteasome beta subunit C-2) cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, beta-subunit complex [GO:0019774]; vacuolar membrane [GO:0005774]; threonine-type endopeptidase activity [GO:0004298]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2036972;,locus:2204675; AT1G21720,AT1G77440 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Proteasome subunit beta type-3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3),Proteasome subunit beta type (EC 3.4.25.1) Q9LST7,Q6H800 PSB3_ORYSJ,Q6H800_ORYSJ PBC1 Os06g0643100 LOC_Os06g43570 OsJ_22127 P0416A11.24,Os02g0182500 OJ1297_C09.31 OSNPB_020182500 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. ENOG411E0AH Q9LX51 FBL64_ARATH F-box/LRR-repeat protein At3g59200 58999 F-box/LRR-repeat protein At3g59200 locus:2081157; AT3G59200 FBD Os01g0596100 protein (Ribosomal RNA apurinic site specific lyase-like) Q5ZB57 Q5ZB57_ORYSJ Os01g0596100 Os01g0596100 B1103C09.26 OSNPB_010596100 ENOG411E0AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter ABC-2 type transporter family protein, expressed (Os12g0411700 protein) (cDNA clone:J013108J11, full insert sequence),ABC transporter AbcG18, putative (Os12g0409900 protein) (cDNA, clone: J065079K01, full insert sequence),Os12g0411700 protein (Fragment),Os12g0409700 protein Q2QT07,Q2QT23,A0A0N7KTX9,A0A0P0Y9Q9 Q2QT07_ORYSJ,Q2QT23_ORYSJ,A0A0N7KTX9_ORYSJ,A0A0P0Y9Q9_ORYSJ Os12g0411700 LOC_Os12g22284 Os12g0411700 OSNPB_120411700,Os12g0409900 LOC_Os12g22120 OsJ_35862 OSNPB_120409900,Os12g0411700 OSNPB_120411700,Os12g0409700 OSNPB_120409700 ENOG411E0AJ LAC1 Q9LMS3 LAC1_ARATH Laccase-1 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 1) (Diphenol oxidase 1) (Urishiol oxidase 1) FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ARA:AT1G18140-MONOMER; 1.10.3.2 65229 Laccase-1 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 1) (Diphenol oxidase 1) (Urishiol oxidase 1) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:16804053}. locus:2194110; AT1G18140 Multicopper oxidase NA NA NA NA NA NA NA ENOG411E0AK Q67YJ7 Q67YJ7_ARATH At4g13070 (RNA-binding CRS1 / YhbY (CRM) domain protein) (Uncharacterized protein At4g13070) 40555 At4g13070 (RNA-binding CRS1 / YhbY (CRM) domain protein) (Uncharacterized protein At4g13070) RNA binding [GO:0003723] locus:2123276; AT4G13070 CRS1_YhbY NA NA NA NA NA NA NA ENOG411E0AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiE/COQ5 methyltransferase family NA NA NA NA NA NA NA ENOG411E0AN Q9FJV7 MCU4_ARATH Calcium uniporter protein 4, mitochondrial FUNCTION: Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria. Constitutes a pore-forming and calcium-conducting subunit. Mitochondrial calcium homeostasis plays key roles in cellular physiology and regulates cell bioenergetics, cytoplasmic calcium signals and activation of cell death pathways. {ECO:0000250|UniProtKB:Q8NE86}. R-ATH-8949215; 34260 Calcium uniporter protein 4, mitochondrial integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; calcium channel activity [GO:0005262]; uniporter activity [GO:0015292] locus:2163842; AT5G42610 Protein of unknown function DUF607 NA NA NA NA NA NA NA ENOG411E0AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os03g0702133 protein,Os06g0216100 protein (Fragment),Os11g0202500 protein Q8S7R8,Q0DPB7,Q75I86,Q2QNK9,B9FAT1,A0A0P0WUL3,A0A0N7KIM8,A0A0P0Y0E4 Q8S7R8_ORYSJ,Q0DPB7_ORYSJ,Q75I86_ORYSJ,Q2QNK9_ORYSJ,B9FAT1_ORYSJ,A0A0P0WUL3_ORYSJ,A0A0N7KIM8_ORYSJ,A0A0P0Y0E4_ORYSJ OSJNBa0049K09.17 LOC_Os10g03320 Os10g0122000 OSNPB_100122000,Os03g0702000 Os03g0702000 OsJ_12254 OSNPB_030702000,OSJNBa0004L11.21 LOC_Os03g49550 Os03g0702500 OSNPB_030702500,Os12g0561900 LOC_Os12g37510 OSNPB_120561900,Os03g0702133 OsJ_12255 OSNPB_030702133,Os06g0216100 OSNPB_060216100,Os04g0197500 OSNPB_040197500,Os11g0202500 OSNPB_110202500 ENOG411E0AQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HpcH/HpaI aldolase/citrate lyase family NA NA NA NA NA NA NA ENOG411E0AR Q940L4,Q7Y220,F4HXL0 Q940L4_ARATH,Q7Y220_ARATH,F4HXL0_ARATH Alpha/beta-Hydrolases superfamily protein (At3g62590/F26K9_20),Alpha/beta-Hydrolases superfamily protein (At3g61680) (Uncharacterized protein At3g61680),Alpha/beta-Hydrolases superfamily protein 73044,71735,78346 Alpha/beta-Hydrolases superfamily protein (At3g62590/F26K9_20),Alpha/beta-Hydrolases superfamily protein (At3g61680) (Uncharacterized protein At3g61680),Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629],hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2081720;,locus:2076785;,locus:2196045; AT3G62590,AT3G61680,AT1G02660 lipase class 3 family Os01g0253900 protein,Os01g0618600 protein (Os01g0618700 protein),Os01g0675933 protein (Fragment) Q5NBU0,Q5NBU1,C7IXA7,A0A0P0V6H7 Q5NBU0_ORYSJ,Q5NBU1_ORYSJ,C7IXA7_ORYSJ,A0A0P0V6H7_ORYSJ P0705D01.7-1 Os01g0253900 OSNPB_010253900,P0705D01.7-2 Os01g0253900 OSNPB_010253900,Os01g0618700 Os01g0618600 OSNPB_010618700,Os01g0675933 OSNPB_010675933 ENOG411E0AS F18O22_300 Q9LY78 Q9LY78_ARATH ARM repeat superfamily protein (Uncharacterized protein F18O22_300) 35650 ARM repeat superfamily protein (Uncharacterized protein F18O22_300) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2145653; AT5G14510 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411E0AT RBL11 Q84MB5,F4JY73 RBL11_ARATH,F4JY73_ARATH Rhomboid-like protein 11, chloroplastic (AtRBL11) (EC 3.4.21.-),Rhomboid-related intramembrane serine protease family protein DISRUPTION PHENOTYPE: No visible phenotype. Rbl10 and rbl11 double mutants have no visible phenotype. {ECO:0000269|PubMed:22738221}. FUNCTION: Rhomboid-type serine protease that catalyzes intramembrane proteolysis. May be involved in TIC22 processing during its import. {ECO:0000269|PubMed:22738221}. 3.4.21.- 31593,32411 Rhomboid-like protein 11, chloroplastic (AtRBL11) (EC 3.4.21.-),Rhomboid-related intramembrane serine protease family protein chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; protein domain specific binding [GO:0019904]; serine-type endopeptidase activity [GO:0004252]; regulation of jasmonic acid metabolic process [GO:0080140],integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:504956416;,locus:2179454; AT5G25752,AT5G25640 Rhomboid family Os05g0220600 protein (cDNA clone:J033052F18, full insert sequence) Q75G53 Q75G53_ORYSJ OSJNBb0043H23.3 Os05g0220600 B1003C08.4 OsJ_17584 OSNPB_050220600 ENOG411E0AU RPL26A,RPL26B P51414,Q9FJX2 RL261_ARATH,RL262_ARATH 60S ribosomal protein L26-1,60S ribosomal protein L26-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 16945,16790 60S ribosomal protein L26-1,60S ribosomal protein L26-2 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; response to cold [GO:0009409]; ribosomal large subunit biogenesis [GO:0042273]; ribosome assembly [GO:0042255],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal large subunit biogenesis [GO:0042273]; ribosome assembly [GO:0042255] locus:2097415;,locus:2158616; AT3G49910,AT5G67510 ribosomal protein Os11g0151300 protein (Ribosomal protein L24, putative),60S ribosomal protein L26-1, putative, expressed (Os12g0150100 protein) (cDNA clone:001-045-F01, full insert sequence),Os01g0140500 protein (Putative ribosomal protein L26) Q53Q51,Q2QXN5,Q5ZDH6 Q53Q51_ORYSJ,Q2QXN5_ORYSJ,Q5ZDH6_ORYSJ Os11g0151300 LOC_Os11g05370 OsJ_32984 OSNPB_110151300,Os12g0150100 LOC_Os12g05430 Os12g0150100 OsJ_35234 OSNPB_120150100,P0480E02.19-1 Os01g0140500 OSNPB_010140500 ENOG411E0AV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sensitivity to red light reduced Os04g0589000 protein,Os04g0588900 protein A0A0P0WE06,A0A0P0WE80 A0A0P0WE06_ORYSJ,A0A0P0WE80_ORYSJ Os04g0589000 OSNPB_040589000,Os04g0588900 OSNPB_040588900 ENOG411E0AW NFYA9 Q945M9 NFYA9_ARATH Nuclear transcription factor Y subunit A-9 (AtNF-YA-9) FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 33151 Nuclear transcription factor Y subunit A-9 (AtNF-YA-9) CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; microgametogenesis [GO:0055046]; negative regulation of transcription, DNA-templated [GO:0045892]; pollen development [GO:0009555]; seed development [GO:0048316]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}. locus:2088791; AT3G20910 Nuclear transcription factor Y subunit Os03g0696300 protein (Fragment) A0A0P0W1M7,A0A0P0W2B5 A0A0P0W1M7_ORYSJ,A0A0P0W2B5_ORYSJ Os03g0696300 OSNPB_030696300 ENOG411E0AX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0AY Q5PNY9,A0A1P8APR1 Q5PNY9_ARATH,A0A1P8APR1_ARATH At1g48460 (tRNA-processing ribonuclease BN),tRNA-processing ribonuclease BN 38071,34081 At1g48460 (tRNA-processing ribonuclease BN),tRNA-processing ribonuclease BN chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plastid [GO:0009536],integral component of membrane [GO:0016021] locus:2198070; AT1G48460 NA NA NA NA NA NA NA NA ENOG411E0AZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others ARP protein-like (Os07g0404300 protein) Q6Z647 Q6Z647_ORYSJ B1010G04a.14 Os07g0404300 OSJNBa0016I05.3 OSNPB_070404300 ENOG411E36I ATHB-21,ATHB-53 Q9ZU70,Q9LVR0 ATB21_ARATH,ATB53_ARATH Homeobox-leucine zipper protein ATHB-21 (HD-ZIP protein ATHB-21) (Homeodomain transcription factor ATHB-21),Homeobox-leucine zipper protein ATHB-53 (HD-ZIP protein ATHB-53) (Homeodomain transcription factor ATHB-53) FUNCTION: Probable transcription factor. {ECO:0000250}.,FUNCTION: Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. 25701,26392 Homeobox-leucine zipper protein ATHB-21 (HD-ZIP protein ATHB-21) (Homeodomain transcription factor ATHB-21),Homeobox-leucine zipper protein ATHB-53 (HD-ZIP protein ATHB-53) (Homeodomain transcription factor ATHB-53) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to auxin [GO:0009733]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.,TISSUE SPECIFICITY: Expressed in root meristem, late flowers and siliques. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. locus:2046263;,locus:2173669; AT2G18550,AT5G66700 zipper protein Homeobox-leucine zipper protein HOX14 (HD-ZIP protein HOX14) (Homeodomain transcription factor HOX14) (OsHox14) Q7XI85 HOX14_ORYSJ HOX14 Os07g0581700 LOC_Os07g39320 OJ1301_C12.13 OsJ_023919 P0453G03.37 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E36E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YABBY protein Protein YABBY 6 (OsYAB5) (OsYABBY6) Q2QM17 YAB6_ORYSJ YAB6 Os12g0621100 LOC_Os12g42610 ENOG411DSE1 Q8W593 LGUC_ARATH Probable lactoylglutathione lyase, chloroplastic (EC 4.4.1.5) (Glyoxalase I) FUNCTION: Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. {ECO:0000250}. PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 1/2. ARA:AT1G67280-MONOMER; 4.4.1.5 39167 Probable lactoylglutathione lyase, chloroplastic (EC 4.4.1.5) (Glyoxalase I) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; stromule [GO:0010319]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; lactoylglutathione lyase activity [GO:0004462]; metal ion binding [GO:0046872]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243]; response to cold [GO:0009409] locus:2019574; AT1G67280 Lactoylglutathione lyase Lactoylglutathione lyase (EC 4.4.1.5) (Glyoxalase I) (Fragment),Os02g0280500 protein (Fragment) Q0DJT2,Q0E217 Q0DJT2_ORYSJ,Q0E217_ORYSJ Os05g0230900 Os05g0230900 OSNPB_050230900,Os02g0280500 Os02g0280500 OSNPB_020280500 FUNCTION: Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. {ECO:0000256|RuleBase:RU361179}. ENOG411DSE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os03g0848700 protein (Powdery mildew resistance protein PM3b, putative, expressed),Os03g0849500 protein,Os01g0360100 protein (Fragment) Q10AL3,A0A0P0W5F4,A0A0P0V2U0 Q10AL3_ORYSJ,A0A0P0W5F4_ORYSJ,A0A0P0V2U0_ORYSJ LOC_Os03g63150 Os03g0848700 OSNPB_030848700,Os03g0849500 OSNPB_030849500,Os01g0360100 OSNPB_010360100 ENOG411DSE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2985) Os05g0341900 protein Q5W6P5 Q5W6P5_ORYSJ Os05g0341900 OJ1314_A05.4 OsJ_18125 OSNPB_050341900 ENOG411DSE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative glycosyl hydrolase of unknown function (DUF1680) Os06g0613000 protein (Fragment) A0A0P0WYU3 A0A0P0WYU3_ORYSJ Os06g0613000 OSNPB_060613000 ENOG411DSE6 FPGS1,FPGS2 F4K2A1,F4J2K2 FPGS1_ARATH,FPGS2_ARATH Folylpolyglutamate synthase (EC 6.3.2.17) (DHFS-FPGS homolog B) (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase) (Tetrahydrofolate synthase),Folylpolyglutamate synthase (EC 6.3.2.17) (DHFS-FPGS homolog C) (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase) (Tetrahydrofolate synthase) DISRUPTION PHENOTYPE: Has short primary roots. Root hairs are also short and wavy. Epidermal cells of wild-type roots are two times longer than epidermal cells of the mutant roots. Short primary roots of the mutant are impaired in F-actin organization due to extensive bundling. Reduced primary root growth of mutants indicate defects in both cell division and cell expansion. Total folate content does not significantly change between the wild-type and mutant in either shoots or roots. However, differences in the accumulation patterns of some folate classes, and general changes in the contribution of each folate class to the total folate pool are found. A considerable increase in total monoglutamylated folates in mutant roots when compared with wild-type is found. This difference is not observed in shoots. Total polyglutamylated folate content is not altered in either tissue. Nucleotides and amino acids are generally depleted in mutant. Vegetative phenotype does not differ visually from wild-type. Polyglutamylated folates are still detectable in the disruption mutant. In comparison to wild-type, the plastid and mitochondrial folate levels are reduced by approximately 50 and 25%, respectively. Folate polyglutamylation levels are significantly reduced but not abolished within the respective compartments. Combined loss of FPGS1 and FPGS2 result in embryo lethality. This double mutant has abnormal seeds that are readily distinguishable as albinos which do not proceed beyond the globular stage of embryogenesis. The absence of a developing embryo lead to collapse of seed walls, leaving shrivelled seed reamnants. FPGS1 and FPGS3 double mutant exhibits dwarfed leaves, late flowering (approximately 13 days after wild-type), reduced fecundity and delayed senescence. Pollination with FPGS1 and FPGS3 double mutant pollen yield at most one or two seeds per silique compared to the yield of full siliques when wild-type stigmas are pollinated with wild-type pollen. There is a 40% reduction in the total of 5-CH(3)-THF pool in FPGS1 and FPGS3 double mutant leaf tissue. FPGS1 and FPGS3 double mutants have 70% lower methionine content than wild-type. {ECO:0000269|PubMed:21070407, ECO:0000269|PubMed:21233333}.,DISRUPTION PHENOTYPE: Vegetative phenotype does not differ visually from wild-type. No obvious defects in root development. Polyglutamylated folates still detectable, but loss of activity leads to a significant reduction (45%) in total foliar folate abundance compared to wild-type. The reduced total folate content is a result of reduced levels of 5-formyl-THF, 10-formyl and 5,10-methenyl-THF, 5-methyl-THF and THF (42, 42, 53 and 48%, respectively) compared to wild-type. The plastid and mitochondrial folate levels are also reduced by approximately 50 and 55%, respectively compared to wild-type. Folate polyglutamylation levels are significantly reduced but not abolished within the respective compartments. Combined loss of FPGS2 and FPGS1 result in embryo lethality. This double mutant has abnormal seeds that are readily distinguishable as albinos which do not proceed beyond the globular stage of embryogenesis. The absence of a developing embryo lead to collapse of seed walls, leaving shrivelled seed reamnants. Combined loss of FPGS2 and FPGS3 results in seedling lethality. Seedlings fail to proceed beyond the expanded cotyledon stage, exhibit an albino phenotype and are unable to thrive beyond germination. {ECO:0000269|PubMed:21070407, ECO:0000269|PubMed:21233333}. FUNCTION: Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis. Required for postembryonic root development. Generates polyglutamylated folate cofactors to support C1 metabolism required for meristem maintenance and cell expansion during postembryonic root development. {ECO:0000250|UniProtKB:Q05932, ECO:0000269|PubMed:11752472, ECO:0000269|PubMed:21070407, ECO:0000269|PubMed:21233333}.,FUNCTION: Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis. {ECO:0000250|UniProtKB:Q05932, ECO:0000269|PubMed:11752472, ECO:0000269|PubMed:21070407}. PATHWAY: Cofactor biosynthesis; tetrahydrofolylpolyglutamate biosynthesis. {ECO:0000250|UniProtKB:Q05932}. R-ATH-196757; 6.3.2.17; 6.3.2.17 63345,68921 Folylpolyglutamate synthase (EC 6.3.2.17) (DHFS-FPGS homolog B) (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase) (Tetrahydrofolate synthase),Folylpolyglutamate synthase (EC 6.3.2.17) (DHFS-FPGS homolog C) (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase) (Tetrahydrofolate synthase) chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; tetrahydrofolylpolyglutamate synthase activity [GO:0004326]; one-carbon metabolic process [GO:0006730]; quiescent center organization [GO:1904961]; root development [GO:0048364]; root hair elongation [GO:0048767]; root meristem growth [GO:0010449]; tetrahydrofolylpolyglutamate biosynthetic process [GO:0046901],mitochondrial inner membrane [GO:0005743]; mitochondrial matrix [GO:0005759]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; tetrahydrofolylpolyglutamate synthase activity [GO:0004326]; one-carbon metabolic process [GO:0006730]; photorespiration [GO:0009853]; seedling development [GO:0090351] TISSUE SPECIFICITY: Expressed in both shoots and roots, but expression in roots is higher compared with shoots. Distinct expression in the quiescent center (QC) region of the root tip. Also expressed in vascular tissues of the cotyledons and hypocotyls, and the first true leaves of 7 days old seedlings. {ECO:0000269|PubMed:21233333}. locus:2153639;,locus:2100048; AT5G05980,AT3G10160 Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine pyrimidine and amino acid synthesis Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (Tetrahydrofolylpolyglutamate synthase),Os10g0503200 protein Q10SU1,Q337F3,A0A0N7KS14 Q10SU1_ORYSJ,Q337F3_ORYSJ,A0A0N7KS14_ORYSJ LOC_Os03g02030 Os03g0111100 OSNPB_030111100,Os10g0503200 LOC_Os10g35940 Os10g0503200 OSNPB_100503200,Os10g0503200 OSNPB_100503200 FUNCTION: Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. {ECO:0000256|PIRNR:PIRNR038895}. ENOG411DSE7 A0A1I9LPZ1,F4J0L7 A0A1I9LPZ1_ARATH,F4J0L7_ARATH Uncharacterized protein 236760,236265 Uncharacterized protein seed development [GO:0048316],mRNA binding [GO:0003729]; seed development [GO:0048316] locus:2074795; AT3G50370 NA Os03g0395600 protein (Fragment) Q0DRD1 Q0DRD1_ORYSJ Os03g0395600 Os03g0395600 OSNPB_030395600 ENOG411DSE8 MCO15.5 A0A1P8BE98,B9DFN4,A0A1P8BEC1,Q94BN8 A0A1P8BE98_ARATH,B9DFN4_ARATH,A0A1P8BEC1_ARATH,Q94BN8_ARATH SWAP (Suppressor-of-White-APricot)/surp domain-containing protein,AT5G55100 protein (SWAP (Suppressor-of-White-APricot)/surp domain-containing protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (Uncharacterized protein At5g55100) 73938,94771,74103,94937 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein,AT5G55100 protein (SWAP (Suppressor-of-White-APricot)/surp domain-containing protein),SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (Uncharacterized protein At5g55100) RNA binding [GO:0003723]; RNA processing [GO:0006396],RNA binding [GO:0003723]; mRNA 5'-splice site recognition [GO:0000395] locus:2161705; AT5G55100 Alternative splicing regulator Gene suppressor-of-white-apricot protein-like (Os01g0698100 protein),Os01g0698100 protein Q5N8K0,Q5N8J9 Q5N8K0_ORYSJ,Q5N8J9_ORYSJ OJ1116_H09.32-1 Os01g0698100 OsJ_03132 OSNPB_010698100,OJ1116_H09.32-2 Os01g0698100 OSNPB_010698100 ENOG411DSEP DEGP2,DEG2 O82261,B3H581 DEGP2_ARATH,B3H581_ARATH Protease Do-like 2, chloroplastic (EC 3.4.21.-),DEGP protease 2 Embryo defective; Preglobular-D. Meinke-2011 FUNCTION: Serine protease that performs the primary cleavage of the photodamaged D1 protein in plant photosystem II. {ECO:0000269|PubMed:11179216}. 3.4.21.- 66802,66674 Protease Do-like 2, chloroplastic (EC 3.4.21.-),DEGP protease 2 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid membrane [GO:0009535]; serine-type endopeptidase activity [GO:0004252]; chloroplast organization [GO:0009658]; photosystem II repair [GO:0010206]; protein catabolic process [GO:0030163],serine-type endopeptidase activity [GO:0004252] locus:2043403; AT2G47940 protease Do-like 2 Os05g0147500 protein (Putative DegP2 protease),Os05g0147500 protein,Os05g0147500 protein (Fragment) Q6ASR0,C7J287,A0A0P0WHV9 Q6ASR0_ORYSJ,C7J287_ORYSJ,A0A0P0WHV9_ORYSJ Os05g0147500 OsJ_17111 OSJNBa0077J22.12 OSNPB_050147500,Os05g0147500 Os05g0147500 OSNPB_050147500,Os05g0147500 OSNPB_050147500 ENOG411DSEQ A0A1P8APP7,F4HYM0,F4HYL9,F4HYL8 A0A1P8APP7_ARATH,F4HYM0_ARATH,F4HYL9_ARATH,F4HYL8_ARATH Uncharacterized protein 75147,84461,98181,99473 Uncharacterized protein membrane [GO:0016020] locus:2011035; AT1G54920 NA Os11g0148400 protein,Os12g0145632 protein (Fragment) Q0IUM2,A0A0P0Y6Y3 Q0IUM2_ORYSJ,A0A0P0Y6Y3_ORYSJ Os11g0148400 Os11g0148400 OSNPB_110148400,Os12g0145632 OSNPB_120145632 ENOG411DSER GK-1,GK-2,AGK2 P93757,Q9M682,A0A1P8AXM7,A0A1P8AXQ4,A0A1P8AXL1,A0A1P8AXT0,A0A1P8AXQ2,F4J3E9 GMK1_ARATH,GMK2_ARATH,A0A1P8AXM7_ARATH,A0A1P8AXQ4_ARATH,A0A1P8AXL1_ARATH,A0A1P8AXT0_ARATH,A0A1P8AXQ2_ARATH,F4J3E9_ARATH Guanylate kinase 1 (AtGK1) (EC 2.7.4.8) (GMP kinase 1),Guanylate kinase 2 (AtGK2) (EC 2.7.4.8) (GMP kinase 2),Guanylate kinase 1,Guanylate kinase DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant atgk1 and atgk2 is lethal. {ECO:0000269|PubMed:17727616}.,DISRUPTION PHENOTYPE: Growth retardation, narrow and dark-green leaves with elongated petioles, root growth inhibition and reduced fertility. The double mutant atgk1 and atgk2 is lethal. {ECO:0000269|PubMed:17727616}. FUNCTION: Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2. {ECO:0000269|PubMed:10632732, ECO:0000269|PubMed:17727616}.,FUNCTION: Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1. {ECO:0000269|PubMed:17727616}. ARA:AT2G41880-MONOMER;MetaCyc:AT2G41880-MONOMER; 2.7.4.8 42668,42553,40017,36564,37872,34971,45998,42624 Guanylate kinase 1 (AtGK1) (EC 2.7.4.8) (GMP kinase 1),Guanylate kinase 2 (AtGK2) (EC 2.7.4.8) (GMP kinase 2),Guanylate kinase 1,Guanylate kinase cytosol [GO:0005829]; ATP binding [GO:0005524]; guanylate kinase activity [GO:0004385]; gametophyte development [GO:0048229]; nucleotide metabolic process [GO:0009117],cytosol [GO:0005829]; ATP binding [GO:0005524]; guanylate kinase activity [GO:0004385]; gametophyte development [GO:0048229]; regulation of developmental growth [GO:0048638],guanylate kinase activity [GO:0004385],kinase activity [GO:0016301],guanylate kinase activity [GO:0004385]; nucleotide metabolic process [GO:0009117] locus:2054356;,locus:2103518; AT2G41880,AT3G57550 guanylate kinase Guanylate kinase 1 (OsGK1) (EC 2.7.4.8) (GMP kinase 1) Q2QPW1 GMK1_ORYSJ GK1 Os12g0515600 LOC_Os12g33100 FUNCTION: Essential for recycling GMP and indirectly, cGMP. {ECO:0000269|PubMed:17727616}. MISCELLANEOUS: Plants silencing GK1 have no visible phenotype. {ECO:0000305|PubMed:17727616}. ENOG411DSET RPN5B,RPN5A,EMB2107 Q8VWK0,Q9FIB6,A0A1P8BHB1,B3H6B0,F4KF39,F4KFD7 PS12B_ARATH,PS12A_ARATH,A0A1P8BHB1_ARATH,B3H6B0_ARATH,F4KF39_ARATH,F4KFD7_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog B (26S proteasome regulatory subunit RPN5b) (AtRPN5b) (26S proteasome regulatory subunit p55 homolog B),26S proteasome non-ATPase regulatory subunit 12 homolog A (26S proteasome regulatory subunit RPN5a) (AtRPN5a) (26S proteasome regulatory subunit p55 homolog A) (Protein EMBRYO DEFECTIVE 2107) (Protein MARIPOSA),Regulatory particle non-ATPase subunit 5B,26S proteasome regulatory subunit, putative (RPN5) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19252082}.,DISRUPTION PHENOTYPE: Displays a host of morphogenetic defects, including abnormal embryogenesis, partially deetiolated development in the dark, a severely dwarfed phenotype when grown in the light, and infertility. {ECO:0000269|PubMed:19252082}. Cannot recover homozygous double mutant.,Mutants display plieotropic effects on development. When grown in continuous light seedlings produce lanceolate shaped leaves with fewer numbers of cells. In long days- the rosettes are comprised of clusters of abnormally shaped leaves. Floral morphology is normal but the anthers do not shed pollen. Embryogenesis is defective. Mutant embryos are delayed in development and have fewer cells. Embryo defective; Cotyledon; Dwarf; Abnormal leaf and flower morphology; Severely reduced fertility-D. Meinke-2002 FUNCTION: Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Acts redundantly with RPN5A. {ECO:0000250, ECO:0000269|PubMed:19252082}.,FUNCTION: Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. Required for gametogenesis and sporophyte development. Acts redundantly with RPN5B. {ECO:0000269|PubMed:19252082}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 51118,50837,48701,52668,51059,50850 26S proteasome non-ATPase regulatory subunit 12 homolog B (26S proteasome regulatory subunit RPN5b) (AtRPN5b) (26S proteasome regulatory subunit p55 homolog B),26S proteasome non-ATPase regulatory subunit 12 homolog A (26S proteasome regulatory subunit RPN5a) (AtRPN5a) (26S proteasome regulatory subunit p55 homolog A) (Protein EMBRYO DEFECTIVE 2107) (Protein MARIPOSA),Regulatory particle non-ATPase subunit 5B,26S proteasome regulatory subunit, putative (RPN5) cytoplasm [GO:0005737]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, lid subcomplex [GO:0008541]; multicellular organism development [GO:0007275]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein catabolic process [GO:0030163],cytoplasm [GO:0005737]; nuclear proteasome complex [GO:0031595]; proteasome regulatory particle, lid subcomplex [GO:0008541]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; proteasome complex [GO:0000502]; multicellular organism development [GO:0007275],proteasome complex [GO:0000502] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2176100;,locus:2178138; AT5G64760,AT5G09900 26S proteasome non-atpase regulatory subunit Os03g0851300 protein (PCI domain containing protein, expressed) (Putative proteasome regulatory non-ATPase subunit) (cDNA clone:J023081N11, full insert sequence) (cDNA clone:J033048G13, full insert sequence),Os03g0851300 protein (Fragment) Q851Y6,A0A0P0W5L8 Q851Y6_ORYSJ,A0A0P0W5L8_ORYSJ LOC_Os03g63430 Os03g0851300 OSJNBa0015N08.15 OSNPB_030851300,Os03g0851300 OSNPB_030851300 ENOG411DSEU Q9FJY6,A0A1P8BDF7 Q9FJY6_ARATH,A0A1P8BDF7_ARATH Apospory-associated protein C-like (Apospory-associated protein C-like protein) (Galactose mutarotase-like superfamily protein),Galactose mutarotase-like superfamily protein ARA:GQT-2401-MONOMER; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Glycolysis / Gluconeogenesis (00010),Metabolic pathways (01100) 33692,30476 Apospory-associated protein C-like (Apospory-associated protein C-like protein) (Galactose mutarotase-like superfamily protein),Galactose mutarotase-like superfamily protein apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; carbohydrate binding [GO:0030246]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975],carbohydrate binding [GO:0030246]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975] locus:2154870; AT5G66530 Aldose 1-epimerase Glucose-6-phosphate 1-epimerase (EC 5.1.3.15) Q6K2P3 Q6K2P3_ORYSJ Os09g0327400 OSNPB_090327400 P0706E03.9 ENOG411DSEV AUR1,AUR2 Q9M077,Q683C9,A0A1P8B232,F4ITJ0,A0A1P8B224 AUR1_ARATH,AUR2_ARATH,A0A1P8B232_ARATH,F4ITJ0_ARATH,A0A1P8B224_ARATH Serine/threonine-protein kinase Aurora-1 (AtAur1) (EC 2.7.11.1) (Aurora-like kinase 1),Serine/threonine-protein kinase Aurora-2 (AtAur2) (EC 2.7.11.1) (Aurora-like kinase 2),Ataurora2 FUNCTION: Phosphorylates specifically 'Ser-10' of histone H3 in vitro and colocalizes with phosphorylated histone H3 during mitosis. Associates with cytoskeletal structures that are necessary for cytokinesis and with the microtubule spindle. Colocalizes also with gamma-tubulin and function in microtubule organizing centers (MTOCs). In contrast with the mammalian B-type Aurora, AUR1 has no kinase activity toward 'Ser-28' of histone H3. {ECO:0000269|PubMed:15722465, ECO:0000269|PubMed:16028112, ECO:0000269|PubMed:22150830}.,FUNCTION: Phosphorylates specifically 'Ser-10' of histone H3 in vitro. Associates with cytoskeletal structures that are necessary for cytokinesis and with the microtubule spindle. Might colocalize with gamma-tubulin and function in microtubule organizing centers (MTOCs). {ECO:0000269|PubMed:16028112}. 2.7.11.1 33972,32757,40269,29728,34868 Serine/threonine-protein kinase Aurora-1 (AtAur1) (EC 2.7.11.1) (Aurora-like kinase 1),Serine/threonine-protein kinase Aurora-2 (AtAur2) (EC 2.7.11.1) (Aurora-like kinase 2),Ataurora2 cell plate [GO:0009504]; chromosome passenger complex [GO:0032133]; condensed nuclear chromosome, centromeric region [GO:0000780]; microtubule [GO:0005874]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; spindle microtubule [GO:0005876]; spindle midzone [GO:0051233]; spindle pole [GO:0000922]; ATP binding [GO:0005524]; histone kinase activity (H3-S10 specific) [GO:0035175]; protein serine/threonine kinase activity [GO:0004674]; cell division [GO:0051301]; histone phosphorylation [GO:0016572]; mitotic spindle organization [GO:0007052]; regulation of cytokinesis [GO:0032465],chromosome passenger complex [GO:0032133]; condensed nuclear chromosome, centromeric region [GO:0000780]; cytoplasm [GO:0005737]; nuclear membrane [GO:0031965]; nucleus [GO:0005634]; spindle microtubule [GO:0005876]; spindle midzone [GO:0051233]; spindle pole [GO:0000922]; ATP binding [GO:0005524]; histone kinase activity (H3-S10 specific) [GO:0035175]; histone phosphorylation [GO:0016572]; mitotic spindle organization [GO:0007052]; regulation of cytokinesis [GO:0032465],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell cycle [GO:0007049],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; cell cycle [GO:0007049] DEVELOPMENTAL STAGE: Peak of expression at mitosis. {ECO:0000269|PubMed:15722465}.,DEVELOPMENTAL STAGE: Expression peaks at mitosis. {ECO:0000269|PubMed:15722465}. TISSUE SPECIFICITY: Abundant in roots, flowers and flower buds, low or absent in expanded leaves, stems and siliques. {ECO:0000269|PubMed:15722465}. locus:2134103;,locus:2043485; AT4G32830,AT2G25880 Serine threonine-protein kinase Os01g0191800 protein (cDNA clone:006-304-B11, full insert sequence) (cDNA clone:J033091I08, full insert sequence) Q5SNH4 Q5SNH4_ORYSJ Os01g0191800 Os01g0191800 OsJ_00707 OSNPB_010191800 P0671B11.4 P0710E05.39 ENOG411DSEW T12E18_90,MOJ9.20 Q9M2U7,F4K5B9 Q9M2U7_ARATH,F4K5B9_ARATH AT3g54400/T12E18_90 (Eukaryotic aspartyl protease family protein) (Nucleoid DNA-binding-like protein),Eukaryotic aspartyl protease family protein 45475,48694 AT3g54400/T12E18_90 (Eukaryotic aspartyl protease family protein) (Nucleoid DNA-binding-like protein),Eukaryotic aspartyl protease family protein apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; DNA binding [GO:0003677]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2096139;,locus:2169369; AT3G54400,AT5G07030 aspartic proteinase Nucleoid DNA-binding-like protein (Os07g0658600 protein) Q8GSB5 Q8GSB5_ORYSJ OJ1477_F01.114 P0047B07.135 Os07g0658600 OSNPB_070658600 ENOG411DSEX Q8L428,Q9T0I9 Q8L428_ARATH,Q9T0I9_ARATH Calcium-binding EF-hand family protein (EF-hand containing protein-like),Calcium-binding EF-hand family protein (EF-Hand containing protein-like) (Putative EF-hand containing protein) 28973,41156 Calcium-binding EF-hand family protein (EF-hand containing protein-like),Calcium-binding EF-hand family protein (EF-Hand containing protein-like) (Putative EF-hand containing protein) calcium ion binding [GO:0005509] locus:2141816; AT4G38810 39 kDa EF-Hand containing protein 39 kDa EF-Hand containing protein, putative, expressed (Os03g0250000 protein) (cDNA clone:006-207-G02, full insert sequence),39 kDa EF-Hand containing protein, putative, expressed (Os10g0177200 protein) (cDNA clone:001-124-H07, full insert sequence) (cDNA clone:J033116D13, full insert sequence) Q10P20,Q33AI7 Q10P20_ORYSJ,Q33AI7_ORYSJ Os03g0250000 LOC_Os03g14590 OSNPB_030250000,Os10g0177200 LOC_Os10g09850 Os10g0177200 OsJ_30875 OSNPB_100177200 ENOG411DSEZ WOX13 O81788 WOX13_ARATH WUSCHEL-related homeobox 13 Early flowering. FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. 29673 WUSCHEL-related homeobox 13 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] locus:2127968; AT4G35550 wuschel-related homeobox WUSCHEL-related homeobox 8 (OsWOX8) (Protein WOX13) Q5QMM3 WOX8_ORYSJ WOX8 Os01g0818400 LOC_Os01g60270 OsJ_03880 P0454H12.31 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411DSEA Q29PY0 Q29PY0_ARATH At1g01225 (NC domain-containing protein-like protein) 28400 At1g01225 (NC domain-containing protein-like protein) locus:505006091; AT1G01225 NC domain-containing protein Os09g0526800 protein (cDNA clone:001-101-B12, full insert sequence) (cDNA clone:006-304-H07, full insert sequence),Os08g0546900 protein (Fragment),Os09g0526800 protein Q652A7,A0A0P0XJY5,A0A0N7KR53 Q652A7_ORYSJ,A0A0P0XJY5_ORYSJ,A0A0N7KR53_ORYSJ OJ1439_F07.19-1 Os09g0526800 OsJ_30077 OSNPB_090526800,Os08g0546900 OSNPB_080546900,Os09g0526800 OSNPB_090526800 ENOG411DSEB PRDA1 Q1H5E9 PRDA1_ARATH Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic (AtPRDA1) DISRUPTION PHENOTYPE: Seedling lethality due to deficiency in chloroplast development. {ECO:0000269|PubMed:24132784}. FUNCTION: Plays an essential role in early steps of chloroplast development. May be involved in the redox control of plastid gene expression by maintening the redox state around chloroplast nucleoids. May positively regulate plastid-encoded RNA polymerase (PEP) activity, through binding to FSD2. {ECO:0000269|PubMed:24132784}. 44013 Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic (AtPRDA1) chloroplast nucleoid [GO:0042644]; chloroplast organization [GO:0009658]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Highly expressed in young leaves, shoots and flowers. Expressed at low levels in stems and siliques. {ECO:0000269|PubMed:24132784}. locus:2165986; AT5G48470 NA Protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic (OsPRDA1) Q53K52 PRDA1_ORYSJ Os11g0425300 LOC_Os11g23790 OsJ_12008 FUNCTION: Plays an essential role in early steps of chloroplast development. May be involved in the redox control of plastid gene expression by maintening the redox state around chloroplast nucleoids. May positively regulate plastid-encoded RNA polymerase (PEP) activity. {ECO:0000250|UniProtKB:Q1H5E9}. ENOG411DSED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalyzes the conversion of geranylgeranyl diphosphate to the phytoalexin precursor Ent-copalyl diphosphate synthase 2 (Ent-CDP synthase 2) (OsCPS2) (OsCPS2ent) (EC 5.5.1.13) (Ent-kaurene synthase A) (OsCyc2),Syn-copalyl diphosphate synthase (OsCPSsyn) (Syn-CPP synthase) (EC 5.5.1.14) (OsCPS4) (OsCyc1),Os09g0319800 protein (Syn-copalyl diphosphate synthase-like) (cDNA clone:J013077H13, full insert sequence),Os04g0178300 protein (Fragment),Os02g0571100 protein (Fragment),Os02g0570900 protein Q6Z5I0,Q0JF02,Q69M33,A0A0P0W7L8,A0A0N7KFI9,A0A0P0VKW2 CPS2_ORYSJ,CPS4_ORYSJ,Q69M33_ORYSJ,A0A0P0W7L8_ORYSJ,A0A0N7KFI9_ORYSJ,A0A0P0VKW2_ORYSJ CPS2 CYC2 Os02g0571100 LOC_Os02g36210 OsJ_006996 P0689H05.16,CPS4 CYC1 Os04g0178300 LOC_Os04g09900 OSJNBa0096F01.12,Os09g0319800 OsJ_28845 OSJNBa0035G04.5 OSJNBb0051H02.22 OSNPB_090319800,Os04g0178300 OSNPB_040178300,Os02g0571100 OSNPB_020571100,Os02g0570900 OSNPB_020570900 FUNCTION: Catalyzes the conversion of geranylgeranyl diphosphate to the phytoalexin precursor ent-copalyl diphosphate. {ECO:0000269|PubMed:15542489}.,FUNCTION: Catalyzes the conversion of geranylgeranyl diphosphate to the phytoalexin precursor syn-copalyl diphosphate. {ECO:0000269|PubMed:15255861}. MISCELLANEOUS: 2 different ent-CDP synthases exist in rice, one being involved in gibberellin biosynthesis and the other in phytoalexins biosynthesis. Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation).,MISCELLANEOUS: Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation). ENOG411DSEE AAP19-1,AAP19-2 Q8LEZ8,O23685,F4JN08 AP1S1_ARATH,AP1S2_ARATH,F4JN08_ARATH AP-1 complex subunit sigma-1 (Adaptor AP-1 19 kDa protein) (Adaptor protein complex AP-1 sigma-1 subunit) (Adaptor-related protein complex 1 sigma-1 subunit) (Clathrin assembly protein complex 1 sigma-1 small chain) (Clathrin assembly small subunit protein AP19-1) (AtAP19-1) (Sigma 1 subunit of AP-1 clathrin) (Sigma-adaptin 1) (Sigma1-adaptin),AP-1 complex subunit sigma-2 (Adaptor AP-1 19 kDa protein) (Adaptor protein complex AP-1 sigma-2 subunit) (Adaptor-related protein complex 1 sigma-2 subunit) (Clathrin assembly protein complex 1 sigma-2 small chain) (Clathrin assembly small subunit protein AP19-2) (AtAP19-2) (Sigma 2 subunit of AP-1 clathrin) (Sigma-adaptin 2) (Sigma2-adaptin),Clathrin adaptor complex small chain family protein FUNCTION: Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting at the trans-Golgi network and early endosomes (TGN/EE). The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (By similarity). {ECO:0000250}. 18759,18914,12616 AP-1 complex subunit sigma-1 (Adaptor AP-1 19 kDa protein) (Adaptor protein complex AP-1 sigma-1 subunit) (Adaptor-related protein complex 1 sigma-1 subunit) (Clathrin assembly protein complex 1 sigma-1 small chain) (Clathrin assembly small subunit protein AP19-1) (AtAP19-1) (Sigma 1 subunit of AP-1 clathrin) (Sigma-adaptin 1) (Sigma1-adaptin),AP-1 complex subunit sigma-2 (Adaptor AP-1 19 kDa protein) (Adaptor protein complex AP-1 sigma-2 subunit) (Adaptor-related protein complex 1 sigma-2 subunit) (Clathrin assembly protein complex 1 sigma-2 small chain) (Clathrin assembly small subunit protein AP19-2) (AtAP19-2) (Sigma 2 subunit of AP-1 clathrin) (Sigma-adaptin 2) (Sigma2-adaptin),Clathrin adaptor complex small chain family protein clathrin-coated vesicle membrane [GO:0030665]; Golgi apparatus [GO:0005794]; membrane coat [GO:0030117]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],membrane coat [GO:0030117]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques (developing fruits and seeds). {ECO:0000269|PubMed:9426606}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques (developing fruits and seeds). {ECO:0000269|PubMed:9426606}. locus:2827550;,locus:2122078; AT2G17380,AT4G35410 AP-1 complex subunit AP complex subunit sigma Q10CG6 Q10CG6_ORYSJ Os03g0783700 LOC_Os03g57040 OSNPB_030783700 ENOG411DSEF Ubinuclein 1,Ubinuclein 2 Q8RX78,A0A1P8AQC6,A0A1P8AQY0,A0A1P8AQD7,F4I700,F4HY30,F4HY28 Q8RX78_ARATH,A0A1P8AQC6_ARATH,A0A1P8AQY0_ARATH,A0A1P8AQD7_ARATH,F4I700_ARATH,F4HY30_ARATH,F4HY28_ARATH At1g21610/F24J8_11 (Wound-responsive family protein),Wound-responsive family protein FUNCTION: May be required for replication-independent chromatin assembly. {ECO:0000250|UniProtKB:Q9NPG3}. 76330,57079,62035,56123,79143,76202,76429 At1g21610/F24J8_11 (Wound-responsive family protein),Wound-responsive family protein WASH complex [GO:0071203] locus:2196010;,locus:2026987; AT1G21610,AT1G77310 NA Os01g0883200 protein (Fragment),Os05g0422600 protein (Fragment) A0A0P0VB81,A0A0N7KKT2 A0A0P0VB81_ORYSJ,A0A0N7KKT2_ORYSJ Os01g0883200 OSNPB_010883200,Os05g0422600 OSNPB_050422600 ENOG411DSEG NPSN13,NPSN12 Q9LRP1,Q9LNH6,A0A1P8AX23,F4J563 NPS13_ARATH,NPS12_ARATH,A0A1P8AX23_ARATH,F4J563_ARATH Novel plant SNARE 13 (AtNPSN13),Novel plant SNARE 12 (AtNPSN12),Putative plant snare 12,Putative plant snare 13 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. 30414,29887,23989,24538 Novel plant SNARE 13 (AtNPSN13),Novel plant SNARE 12 (AtNPSN12),Putative plant snare 12,Putative plant snare 13 cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi to vacuole transport [GO:0006896]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein targeting to vacuole [GO:0006623]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle fusion with Golgi apparatus [GO:0048280],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, stems, flower, siliques and leaves. locus:2093601;,locus:2007730; AT3G17440,AT1G48240 novel plant snare Os07g0637400 protein (Vesicle soluble NSF attachment protein receptor-like protein) (cDNA clone:J013108F08, full insert sequence),Novel plant SNARE 11, putative, expressed (Os03g0369800 protein) (Putative vesicle soluble NSF attachment protein receptor) (cDNA clone:J013000J14, full insert sequence) Q8H5R6,Q10KU8 Q8H5R6_ORYSJ,Q10KU8_ORYSJ OJ1136_D11.130 Os07g0637400 OSNPB_070637400,Os03g0369800 LOC_Os03g25390 Os03g0369800 OsJ_10993 OSJNBa0013M12.4 OSNPB_030369800 ENOG411DSEI Q9LK47 Q9LK47_ARATH At3g23700/MYM9_3 (Nucleic acid-binding proteins superfamily) 42750 At3g23700/MYM9_3 (Nucleic acid-binding proteins superfamily) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; nucleolus [GO:0005730]; nucleus [GO:0005634]; small-subunit processome [GO:0032040]; mRNA binding [GO:0003729]; DNA duplex unwinding [GO:0032508]; maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000466]; maturation of 5S rRNA [GO:0000481]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; RNA folding [GO:0034337] locus:2095203; AT3G23700 ribosomal protein Os03g0844900 protein (Putative ribosomal S1 protein (With alternative splicing)) (S1 RNA binding domain containing protein, expressed) (cDNA clone:J023075D13, full insert sequence) Q75LC0 Q75LC0_ORYSJ OSJNBa0032G11.21 LOC_Os03g62780 Os03g0844900 OSNPB_030844900 ENOG411DSEK F4I111,Q8VYR0,A8MR98 MCU6_ARATH,MCU5_ARATH,A8MR98_ARATH Calcium uniporter protein 6, mitochondrial,Calcium uniporter protein 5, mitochondrial,Calcium uniporter (DUF607) FUNCTION: Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria. Mitochondrial calcium homeostasis plays key roles in cellular physiology and regulates cell bioenergetics, cytoplasmic calcium signals and activation of cell death pathways. {ECO:0000250|UniProtKB:Q8NE86}.,FUNCTION: Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria. Constitutes a pore-forming and calcium-conducting subunit. Mitochondrial calcium homeostasis plays key roles in cellular physiology and regulates cell bioenergetics, cytoplasmic calcium signals and activation of cell death pathways. {ECO:0000250|UniProtKB:Q8NE86}. R-ATH-8949215; 33803,33685,24261 Calcium uniporter protein 6, mitochondrial,Calcium uniporter protein 5, mitochondrial,Calcium uniporter (DUF607) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; calcium channel activity [GO:0005262]; uniporter activity [GO:0015292] locus:505006112;,locus:2206510; AT1G09575,AT1G57610 Protein of unknown function DUF607 Os01g0817000 protein (cDNA clone:J023131P12, full insert sequence),Os12g0122100 protein,Os11g0124500 protein Q5QML5,Q2QYF2,B9G951 Q5QML5_ORYSJ,Q2QYF2_ORYSJ,B9G951_ORYSJ Os01g0817000 B1148D12.16 OSNPB_010817000 P0454H12.5,Os12g0122100 LOC_Os12g02880 OsJ_35046 OSNPB_120122100,Os11g0124500 OsJ_32771 OSNPB_110124500 ENOG411E3DV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0165600 protein,Os04g0630700 protein,Os11g0527700 protein (Fragment),Os03g0441101 protein (Fragment) Q942P3,A3AXQ0,A0A0P0Y2V4,A0A0P0VZ66 Q942P3_ORYSJ,A3AXQ0_ORYSJ,A0A0P0Y2V4_ORYSJ,A0A0P0VZ66_ORYSJ Os01g0165600 OsJ_00502 OSNPB_010165600 P0701D05.13,Os04g0630700 OsJ_16280 OSNPB_040630700,Os11g0527700 OSNPB_110527700,Os03g0441101 OSNPB_030441101 ENOG411DX6G DRD1 Q9SIW2,A0A1P8B0G3,F4JA84,F4JA85,F4J923 CHR35_ARATH,A0A1P8B0G3_ARATH,F4JA84_ARATH,F4JA85_ARATH,F4J923_ARATH Protein CHROMATIN REMODELING 35 (Protein DEFECTIVE IN MERISTEM SILENCING 1) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1),SNF2 domain-containing protein / helicase domain-containing protein,ATP-dependent helicase family protein,DNA repair protein-like protein DISRUPTION PHENOTYPE: Reduced association of NRPE1 with chromatin, leading to altered chromatin binding of the DDR complex (PubMed:19013275, PubMed:22864289). Defective in RNA-directed non-CpG DNA methylation resulting in reactivation of silenced genes and enhancers, whereas methylation of centromeric and rDNA repeats is unaffected (PubMed:15120073, PubMed:15947783, PubMed:15924141, PubMed:16741558, PubMed:19825647, PubMed:18425128). Reduced accumulation of 24-nt siRNAs and reduced DNA methylation of siRNA-directed DNA methylation (RdDM) target loci (PubMed:19204117, PubMed:22647529). Increase in CpG DNA methylation leading to abnormal maintenance of some silenced genes (PubMed:15947783). Derepression of solo retrotransposon large terminal repeats (LTRs) and of transposable elements (TE) edges accompanied by reduced cytosine methylation and transcriptional up-regulation of neighboring sequences, and associated with euchromatic histone modifications but little or no H3K9 dimethylation. By contrast, LTRs of retrotransposons that remain silent in disrupted plants despite reduced cytosine methylation lack euchromatic marks and have H3K9 dimethylation (PubMed:16724114, PubMed:23540698). Decondensation of the major pericentromeric repeats and depletion of the heterochromatic mark histone H3 lysine 9 dimethylation (H3K9me2) at chromocenters, leading to transcriptional reactivation of specific classes of pericentromeric 180-bp repeats and reduced heterochromatin (PubMed:19825650). Relieved exo-Pdsi self-silencing resulting in accumulation of dsRNA and Pdsi-derivating 21-nt mobile siRNAs which increase non-cell-autonomous silencing of endo-PDS in neighboring cells (PubMed:21771120). Increases susceptibility to the necrotrophic fungal pathogen Plectosphaerella cucumerina (PubMed:22242006). {ECO:0000269|PubMed:15120073, ECO:0000269|PubMed:15924141, ECO:0000269|PubMed:15947783, ECO:0000269|PubMed:16724114, ECO:0000269|PubMed:16741558, ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:19013275, ECO:0000269|PubMed:19204117, ECO:0000269|PubMed:19825647, ECO:0000269|PubMed:19825650, ECO:0000269|PubMed:21771120, ECO:0000269|PubMed:22242006, ECO:0000269|PubMed:22647529, ECO:0000269|PubMed:22864289, ECO:0000269|PubMed:23540698}. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Reduced RNA-directed DNA methylation-A. Matzke-2004 FUNCTION: Subunit of the chromatin-remodeling complex (DDR complex) that mediates RNA polymerases IV and V (Pol IV and Pol V) recruitment to chromatin (PubMed:19013275, PubMed:22864289). Cooperates with Pol IV and Pol V to regulates RNA- and RNAi- (RNA interference) directed non-CpG de novo DNA methylation on cytosine of genes targeted for silencing and enhancers, also known as siRNA-directed DNA methylation (RdDM), thus leading to epigenetic modification of the genome and promoting/maintaining heterochromatin (PubMed:15120073, PubMed:15947783, PubMed:15924141, PubMed:16724114, PubMed:16741558, PubMed:19204117, PubMed:19825647, PubMed:22647529, PubMed:18425128). In collaboration with Pol V, mediates/maintains, in cis, methylation-associated self-silencing of exogenous transgene transcribing inverted-repeat (exo-IR) silencer (exo-Pdsi) to restrain exo-IR dsRNA accumulation and subsequent inappropriate silencing of active protein-coding genes (e.g. PDS) by exo-IR-derivating 24-nt siRNAs (PubMed:21771120). Also required to mediate loss of CpG methylation when the silencing inducer is withdrawn (PubMed:15947783). Required for the maintenance of retrotransposon large terminal repeats (LTRs) and transposable elements (TE) edges silencing mediated by cytosine methylation (PubMed:16724114, PubMed:23540698). Required for transcriptional repression of specific classes of pericentromeric 180-bp repeats by promoting condensation and histone H3 lysine 9 dimethylation (H3K9me2) at chromocenters (PubMed:19825650). Required for basal resistance against the necrotrophic fungal pathogen Plectosphaerella cucumerina (PubMed:22242006). {ECO:0000269|PubMed:15120073, ECO:0000269|PubMed:15924141, ECO:0000269|PubMed:15947783, ECO:0000269|PubMed:16724114, ECO:0000269|PubMed:16741558, ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:19013275, ECO:0000269|PubMed:19204117, ECO:0000269|PubMed:19825647, ECO:0000269|PubMed:19825650, ECO:0000269|PubMed:21771120, ECO:0000269|PubMed:22242006, ECO:0000269|PubMed:22647529, ECO:0000269|PubMed:22864289, ECO:0000269|PubMed:23540698}. 100229,100491,53579,37187,44270 Protein CHROMATIN REMODELING 35 (Protein DEFECTIVE IN MERISTEM SILENCING 1) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1),SNF2 domain-containing protein / helicase domain-containing protein,ATP-dependent helicase family protein,DNA repair protein-like protein DNA-directed RNA polymerase V complex [GO:0000419]; nuclear pericentric heterochromatin [GO:0031618]; nucleus [GO:0005634]; RNA polymerase IV transcription factor complex [GO:0090577]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; cellular response to exogenous dsRNA [GO:0071360]; defense response to fungus [GO:0050832]; DNA methylation [GO:0006306]; DNA methylation on cytosine [GO:0032776]; heterochromatin maintenance [GO:0070829]; positive regulation of chromatin binding [GO:0035563]; positive regulation of histone H3-K9 dimethylation [GO:1900111]; positive regulation of RNA interference [GO:1900370]; regulation of gene silencing [GO:0060968]; regulation of gene silencing by miRNA [GO:0060964]; regulation of gene silencing by RNA [GO:0060966]; regulation of RNA interference [GO:1900368]; RNA-directed DNA methylation [GO:0080188],ATP binding [GO:0005524]; helicase activity [GO:0004386],integral component of membrane [GO:0016021]; helicase activity [GO:0004386],plasmodesma [GO:0009506],helicase activity [GO:0004386] locus:2042619;,locus:2084628;,locus:504955578;,locus:2098617; AT2G16390,AT3G32280,AT3G32330,AT3G31900 DNA repair and recombination protein Os06g0255700 protein (Putative DNA repair protein),Os07g0434500 protein,Os08g0243866 protein (Fragment),Os08g0289400 protein (Fragment) Q652G9,A0A0P0X5H1,A0A0P0XDE3,A0A0P0XE56 Q652G9_ORYSJ,A0A0P0X5H1_ORYSJ,A0A0P0XDE3_ORYSJ,A0A0P0XE56_ORYSJ Os06g0255700 Os06g0255700 OSNPB_060255700 P0592E11.27 P0624H09.1,Os07g0434500 OSNPB_070434500,Os08g0243866 OSNPB_080243866,Os08g0289400 OSNPB_080289400 ENOG411DX6D Q9C5C7,A0A1I9LLV2,A0A1I9LLV3 Q9C5C7_ARATH,A0A1I9LLV2_ARATH,A0A1I9LLV3_ARATH AAA-type ATPase family protein / ankyrin repeat family protein (Putative rubisco expression protein),AAA-type ATPase family protein / ankyrin repeat family protein 53675,48382,43526 AAA-type ATPase family protein / ankyrin repeat family protein (Putative rubisco expression protein),AAA-type ATPase family protein / ankyrin repeat family protein chloroplast [GO:0009507]; intracellular [GO:0005622]; ATP binding [GO:0005524],ATP binding [GO:0005524] locus:2091702; AT3G24530 ATPase family associated with various cellular activities (AAA) Os02g0266300 protein (Putative CbxX protein) (cDNA clone:001-114-F10, full insert sequence) Q6ETX1 Q6ETX1_ORYSJ Os02g0266300 Os02g0266300 OSNPB_020266300 P0006C08.34 ENOG411DX6B LECRKS4 Q9M2S4 LRKS4_ARATH L-type lectin-domain containing receptor kinase S.4 (LecRK-S.4) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici and to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms and higher bacterial proliferation. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}. 2.7.11.1 76182 L-type lectin-domain containing receptor kinase S.4 (LecRK-S.4) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742]; defense response to oomycetes [GO:0002229] locus:2099941; AT3G55550 Lectin-domain containing receptor kinase Os12g0574700 protein (Protein kinase domain containing protein, expressed) Q2QN91 Q2QN91_ORYSJ Os12g0574700 LOC_Os12g38610 OsJ_36611 OSNPB_120574700 ENOG411DX6C PEX7 Q9XF57 PEX7_ARATH Peroxisome biogenesis protein 7 (Peroxin-7) (AtPEX7) (Peroxisomal targeting signal type 2 receptor) (Pex7p) DISRUPTION PHENOTYPE: No visible phenotype, but reduced sensitivity to indole-3-butyric acid (IBA) and inefficient peroxisomal import of PTS2-containing proteins. {ECO:0000269|PubMed:15548601}. Displays peroxisomal defects such as reduced sensitivity to exogenously applied IBA. Fewer lateral roots after IBA treatment. Not generally defective in auxin responses. Hypocotyl is not markedly shorter than WT when grown without added sucrose in the dark. PTS2-tageed proteins are not efficiently imported into the peroxisome. Few lateral roots; Insensitive to IBA; Resistant to 2,4-DB-B. Bartel-2005 FUNCTION: Import receptor for peroxisomal-targeting signal two (PTS2). A receptor-cargo complex composed of PEX5, PEX7, a PTS1-containing protein and a PTS2-containing protein is targeted to peroxisomes during import. {ECO:0000269|PubMed:15548601, ECO:0000269|PubMed:15637057, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:19594707, ECO:0000269|PubMed:20130089}. MISCELLANEOUS: The binding of a cargo to PEX7 is necessary but not sufficient for the targeting of the complex to the peroxisome. PEX12, PEX13 and PEX14 play a critical role in this targeting. PEX7 is required for PEX5 stability in light-grown seedlings. 35473 Peroxisome biogenesis protein 7 (Peroxin-7) (AtPEX7) (Peroxisomal targeting signal type 2 receptor) (Pex7p) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; peroxisomal membrane [GO:0005778]; protein targeting to peroxisome [GO:0006625] DEVELOPMENTAL STAGE: Expressed at the early stage of germination. {ECO:0000269|PubMed:11978862}. TISSUE SPECIFICITY: Expressed in siliques and leaves, but barely detectable in flowers, stems and roots. {ECO:0000269|PubMed:11978862}. locus:2029939; AT1G29260 peroxisomal targeting signal type 2 receptor Os02g0245100 protein (Putative peroxisomal targeting signal type 2 receptor) (cDNA clone:006-201-H02, full insert sequence) (cDNA clone:006-208-E07, full insert sequence) (cDNA clone:J023025I02, full insert sequence) Q6EUD4 Q6EUD4_ORYSJ Os02g0245100 OJ1134_F06.8-1 OSNPB_020245100 ENOG411DX6A PER67 Q9LVL2 PER67_ARATH Peroxidase 67 (Atperox P67) (EC 1.11.1.7) (ATP44) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G58390-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34708 Peroxidase 67 (Atperox P67) (EC 1.11.1.7) (ATP44) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2161283; AT5G58390 peroxidase Peroxidase (EC 1.11.1.7) Q5U1G2,Q5U1F7 Q5U1G2_ORYSJ,Q5U1F7_ORYSJ prx131 Os11g0112200 OSNPB_110112200,prx136 Os12g0111800 OSNPB_120111800 ENOG411DX6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formiminotransferase domain N-terminal subdomain Expressed protein (Formiminotransferase-cyclodeaminase, putative, expressed) (Os03g0582000 protein),Os03g0582000 protein (Fragment) Q75ID2,Q75ID3,A0A0P0W0B9 Q75ID2_ORYSJ,Q75ID3_ORYSJ,A0A0P0W0B9_ORYSJ OJ1785_A05.10 Os03g0582000 LOC_Os03g38540 OSNPB_030582000,OJ1785_A05.10 LOC_Os03g38540 Os03g0582000 OsJ_11547 OSNPB_030582000,Os03g0582000 OSNPB_030582000 ENOG411DX6M F4ITB8,A2RVL9,Q9LMY2 F4ITB8_ARATH,A2RVL9_ARATH,Q9LMY2_ARATH 18S pre-ribosomal assembly protein gar2-like protein,At1g13650,F21F23.9 49066,32623,32090 18S pre-ribosomal assembly protein gar2-like protein,At1g13650,F21F23.9 plasma membrane [GO:0005886] locus:2044294;,locus:2023875; AT2G03810,AT1G13650 NA Os02g0582100 protein B9F0R9 B9F0R9_ORYSJ Os02g0582100 OsJ_07282 OSNPB_020582100 ENOG411DX6J Q8GYH9,Q67ZF1,A0A1I9LLS2,F4J801,F4J800 Q8GYH9_ARATH,Q67ZF1_ARATH,A0A1I9LLS2_ARATH,F4J801_ARATH,F4J800_ARATH Kinase-like protein (Uncharacterized protein At3g46280/F12M12_250),Receptor protein kinase-like protein (Uncharacterized protein At3g46270),Receptor protein kinase-like protein,Kinase-like protein,ER protein carbohydrate-binding protein 50504,50465,51323,48067,44753 Kinase-like protein (Uncharacterized protein At3g46280/F12M12_250),Receptor protein kinase-like protein (Uncharacterized protein At3g46270),Receptor protein kinase-like protein,Kinase-like protein,ER protein carbohydrate-binding protein integral component of membrane [GO:0016021]; kinase activity [GO:0016301],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; kinase activity [GO:0016301],kinase activity [GO:0016301],integral component of membrane [GO:0016021] locus:2075326;,locus:2075316;,locus:2075301;,locus:2075271; AT3G46280,AT3G46270,AT3G46260,AT3G46240 NA NA NA NA NA NA NA NA ENOG411DX6K YUP8H12R.36 Q8GYQ9,Q9FX82 Q8GYQ9_ARATH,Q9FX82_ARATH Enhancer of polycomb-like protein 52398,50675 Enhancer of polycomb-like protein Piccolo NuA4 histone acetyltransferase complex [GO:0032777]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; histone acetylation [GO:0016573]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2207460;,locus:2017978; AT1G79020,AT1G16690 Enhancer of Enhancer of polycomb-like protein Q6Z0F1,A0A0P0XJK6 Q6Z0F1_ORYSJ,A0A0P0XJK6_ORYSJ Os08g0338900 OsJ_26958 OSJNBa0062G05.8 OSNPB_080338900 P0702G08.21,Os09g0284600 OSNPB_090284600 ENOG411DX6H Q8GUI9,A0A1P8BD83 Q8GUI9_ARATH,A0A1P8BD83_ARATH Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45),Beta-glucosidase, GBA2 type family protein FUNCTION: Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide. {ECO:0000256|PIRNR:PIRNR028944}. ARA:AT5G49900-MONOMER; R-ATH-1660662; 3.2.1.45 106709,77441 Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45),Beta-glucosidase, GBA2 type family protein Golgi apparatus [GO:0005794]; membrane [GO:0016020]; glucosylceramidase activity [GO:0004348]; glucosylceramide catabolic process [GO:0006680],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553] locus:2158819; AT5G49900 Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (By similarity) Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) Q2R859 Q2R859_ORYSJ LOC_Os11g13810 Os11g0242100 OsJ_33494 OSNPB_110242100 FUNCTION: Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide. {ECO:0000256|PIRNR:PIRNR028944}. ENOG411DX6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411DX6V Q9FX63 Q9FX63_ARATH Regulator of Vps4 activity in the MVB pathway protein (Uncharacterized protein At1g13340) (Uncharacterized protein At1g13340/F13B4_1) (Unknown protein) R-ATH-6798695; 45401 Regulator of Vps4 activity in the MVB pathway protein (Uncharacterized protein At1g13340) (Uncharacterized protein At1g13340/F13B4_1) (Unknown protein) protein transport [GO:0015031]; response to oxidative stress [GO:0006979] locus:2009892; AT1G13340 Regulator of Vps4 activity in the MVB pathway Expressed protein (Os03g0710000 protein) (cDNA clone:006-205-A12, full insert sequence) (cDNA clone:006-305-H03, full insert sequence) (cDNA clone:J033051P12, full insert sequence) Q53RJ8 Q53RJ8_ORYSJ Os03g0710000 LOC_Os03g50210 Os03g0710000 OsJ_12304 OSNPB_030710000 ENOG411DX6T AGO10 Q9XGW1 AGO10_ARATH Protein argonaute 10 (Protein PINHEAD) (Protein ZWILLE) DISRUPTION PHENOTYPE: Defects in meristem formation. Shoot apical meristem (SAM) terminates to a flat meristem, a small radially symmetric pin-like structure that lacks a vascular strand, a radially symmetric leaf, a single leaf or two leaves fused on their adaxial sides. Abnormal ovules and embryos. {ECO:0000269|PubMed:19763164, ECO:0000269|PubMed:9501101, ECO:0000269|PubMed:9876176}. Leaves are abaxialized. Adaxial surface has characteristics of abaxial leaf surfaces. Leaves appear rippled.,Abnormal leaves. Leaves are pin-like or lotus-like.,Abnormal leaves pin-like or lotus-like. Complete loss of primary inflorescence; Fasciated adventitious stems and inflorescences; Arrested SAM development-T. Laux-1998 FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development. {ECO:0000269|PubMed:12468725, ECO:0000269|PubMed:19054365, ECO:0000269|PubMed:19763164, ECO:0000269|PubMed:20128885, ECO:0000269|PubMed:9501101, ECO:0000269|PubMed:9876176}. MISCELLANEOUS: Plants overexpressing AGO10 show upward curling of leaf blades and double cotyledon-like structures. R-ATH-426486;R-ATH-426496;R-ATH-5578749; 110868 Protein argonaute 10 (Protein PINHEAD) (Protein ZWILLE) intracellular ribonucleoprotein complex [GO:0030529]; miRNA binding [GO:0035198]; defense response to virus [GO:0051607]; gene silencing by RNA [GO:0031047]; miRNA metabolic process [GO:0010586]; multicellular organism development [GO:0007275]; regulation of shoot apical meristem development [GO:1902183]; regulation of transcription, DNA-templated [GO:0006355]; regulation of translation [GO:0006417]; somatic stem cell population maintenance [GO:0035019]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, developing embryo, siliques, inflorescences, provascular tissue, shoot apical meristem (SAM) and adaxial (upper) sides of lateral organ primordia. {ECO:0000269|PubMed:12468725, ECO:0000269|PubMed:9876176}. locus:2170897; AT5G43810 Argonaute Protein argonaute PNH1 (Protein PINHEAD homolog 1) (OsPNH1) Q69VD5 PNH1_ORYSJ PHN1 Os06g0597400 LOC_Os06g39640 P0417D05.31 DISRUPTION PHENOTYPE: Malformed leaves with an altered vascular arrangement and abnormal internal structure. Aberrant SAM with reduced OSH1 gene expression. {ECO:0000269|PubMed:12000455}. FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). Plays a role in the maintenance of the indeterminate state of the stem cells in the shoot apical meristem (SAM). Regulates leaf formation through vascular development and may be involved in determining the central domain of the leaf founder region. {ECO:0000250, ECO:0000269|PubMed:12000455}. ENOG411DX6U Q9S7M9 P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2 (p24 family protein beta1) (p24beta1) (p24 family protein beta2) (p24beta2) FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24delta5 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. {ECO:0000250, ECO:0000269|PubMed:22577184}. 24331 Transmembrane emp24 domain-containing protein p24beta2 (p24 family protein beta1) (p24beta1) (p24 family protein beta2) (p24beta2) COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2091107; AT3G07680 Emp24 gp25L p24 family Os09g0507600 protein,Coated vesicle membrane protein-like (Os08g0532900 protein) (cDNA clone:001-121-C01, full insert sequence) (cDNA clone:J033050B05, full insert sequence) A3C0G9,Q6YZD2 A3C0G9_ORYSJ,Q6YZD2_ORYSJ Os09g0507600 OsJ_29951 OSNPB_090507600,Os08g0532900 Os08g0532900 OsJ_28066 OSNPB_080532900 P0702E04.27 ENOG411DX6R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-A11 (Alpha-expansin-11) (OsEXP11) (OsEXPA11) (OsaEXPa1.25),Os01g0274500 protein Q4PNY1,A0A0P0V0V8 EXP11_ORYSJ,A0A0P0V0V8_ORYSJ EXPA11 EXP11 Os01g0274500 LOC_Os01g16770 P0424A08.10,Os01g0274500 OSNPB_010274500 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DX6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II Aminotransferase ALD1 homolog (EC 2.6.1.-),Os03g0195100 protein Q6VMN7,A0A0P0VU73 ALD1_ORYSJ,A0A0P0VU73_ORYSJ ALD1 Os03g0195100 LOC_Os03g09910 OSJNBa0064E16.9,Os03g0195100 OSNPB_030195100 FUNCTION: Probable aminotransferase that may generate amino-acid-derived defense signals and be involved in resistance to pathogens. {ECO:0000250}. ENOG411DX6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0575600 protein (Putative receptor-type protein kinase LRK1),Os07g0575600 protein (Fragment) Q8LIP2,A0A0P0X880 Q8LIP2_ORYSJ,A0A0P0X880_ORYSJ OJ1562_B11.129 Os07g0575600 OsJ_24849 OSNPB_070575600,Os07g0575600 OSNPB_070575600 ENOG411DX6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DX6Z Q84WV3,F4JEH8,F4JEI0,F4JEH7 Q84WV3_ARATH,F4JEH8_ARATH,F4JEI0_ARATH,F4JEH7_ARATH Histone H2A deubiquitinase (DUF3755) (Uncharacterized protein At3g07565),Histone H2A deubiquitinase (DUF3755) 27993,28122,20628,29109 Histone H2A deubiquitinase (DUF3755) (Uncharacterized protein At3g07565),Histone H2A deubiquitinase (DUF3755) DNA binding [GO:0003677] locus:2079636; AT3G07565 myb-like DNA-binding domain containing protein Os05g0305700 protein (cDNA clone:002-118-E12, full insert sequence),Os04g0495700 protein Q0DJA9,A0A0P0WBX4 Q0DJA9_ORYSJ,A0A0P0WBX4_ORYSJ Os05g0305700 Os05g0305700 OsJ_17988 OSNPB_050305700,Os04g0495700 OSNPB_040495700 ENOG411DX6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3479) NA NA NA NA NA NA NA ENOG411DX6Y UGT88A1 Q9LK73 U88A1_ARATH UDP-glycosyltransferase 88A1 (EC 2.4.1.-) FUNCTION: Possesses low quercetin 3-O-glucosyltransferase, 7-O-glucosyltransferase, 3'-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro. {ECO:0000269|PubMed:15352060}. 2.4.1.- 51205 UDP-glycosyltransferase 88A1 (EC 2.4.1.-) cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; quercetin 3'-O-glucosyltransferase activity [GO:0080045]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2088339; AT3G16520 Anthocyanidin Glycosyltransferase (EC 2.4.1.-),Os03g0416001 protein Q8LJ11,Q75IW3 Q8LJ11_ORYSJ,Q75IW3_ORYSJ Os01g0697100 Os01g0697100 OJ1116_H09.18 OsJ_03123 OSNPB_010697100,OSJNBb0059G13.17 Os03g0416001 LOC_Os03g30240 OsJ_11269 OSNPB_030416001 ENOG411DX66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os09g0454600 protein Q0J198 Q0J198_ORYSJ Os09g0454600 Os09g0454600 OsJ_29612 OSNPB_090454600 ENOG411DX67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os08g0179000 protein,Os08g0179150 protein (Fragment) A0A0P0XCI7,A0A0N7KPD3 A0A0P0XCI7_ORYSJ,A0A0N7KPD3_ORYSJ Os08g0179000 OSNPB_080179000,Os08g0179150 OSNPB_080179150 ENOG411DX64 F4IE40 F4IE40_ARATH ARM repeat superfamily protein 113469 ARM repeat superfamily protein cytosol [GO:0005829]; nuclear envelope [GO:0005635]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; protein import into nucleus [GO:0006606] locus:2028825; AT1G26170 Inherit from KOG: Importin 9 Os06g0274100 protein (Fragment) A0A0P0WVH5 A0A0P0WVH5_ORYSJ Os06g0274100 OSNPB_060274100 ENOG411DX65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0565100 protein) (cDNA clone:J013038N04, full insert sequence),Os11g0258500 protein,Os12g0565200 protein Q2QNH8,A0A0P0Y0U3,A0A0P0YBH2 Q2QNH8_ORYSJ,A0A0P0Y0U3_ORYSJ,A0A0P0YBH2_ORYSJ Os12g0565100 LOC_Os12g37760 OSNPB_120565100,Os11g0258500 OSNPB_110258500,Os12g0565200 OSNPB_120565200 ENOG411DX62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DX63 PBL5,PBL6 Q9LQQ8,Q9SIB6,A0A1P8AZ63,F4HSH9 PBL5_ARATH,PBL6_ARATH,A0A1P8AZ63_ARATH,F4HSH9_ARATH Probable serine/threonine-protein kinase PBL5 (EC 2.7.11.1) (PBS1-like protein 5) (Serine/threonine-protein kinase RLCKVII),Probable serine/threonine-protein kinase PBL6 (EC 2.7.11.1) (PBS1-like protein 6),Protein kinase superfamily protein FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 46763,47279,36355,59407 Probable serine/threonine-protein kinase PBL5 (EC 2.7.11.1) (PBS1-like protein 5) (Serine/threonine-protein kinase RLCKVII),Probable serine/threonine-protein kinase PBL6 (EC 2.7.11.1) (PBS1-like protein 6),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2056613;,locus:2026535; AT1G07870,AT2G28590 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DX60 CYP86C2,CYP86C3,CYP86C1,''cytochrome P450 Q9LTN1,Q500V6,Q9FYL0,Q9SAE8,F4HP23 Q9LTN1_ARATH,Q500V6_ARATH,Q9FYL0_ARATH,Q9SAE8_ARATH,F4HP23_ARATH Cytochrome P-450-like protein (Cytochrome P450, family 86, subfamily C, polypeptide 2),At1g13140 (Cytochrome P450, family 86, subfamily C, polypeptide 3),Cytochrome P450, family 86, subfamily C, polypeptide 1 (F21J9.20),Cytochrome P450, family 86, subfamily C, polypeptide 4 (F3F19.17 protein),Cytochrome P450, family 86, subfamily C, polypeptide 3 ARA:AT3G26125-MONOMER;,ARA:GQT-2748-MONOMER;,ARA:AT1G24540-MONOMER;,ARA:GQT-121-MONOMER; 62802,61497,61056,61332,58487 Cytochrome P-450-like protein (Cytochrome P450, family 86, subfamily C, polypeptide 2),At1g13140 (Cytochrome P450, family 86, subfamily C, polypeptide 3),Cytochrome P450, family 86, subfamily C, polypeptide 1 (F21J9.20),Cytochrome P450, family 86, subfamily C, polypeptide 4 (F3F19.17 protein),Cytochrome P450, family 86, subfamily C, polypeptide 3 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2090340;,locus:2031870;,locus:2024086;,locus:2031885; AT3G26125,AT1G13140,AT1G24540,AT1G13150 cytochrome P450 Os02g0596300 protein (Fragment) A0A0P0VLE3 A0A0P0VLE3_ORYSJ Os02g0596300 OSNPB_020596300 ENOG411DX61 Q9XI02,Q9CAQ5 Q9XI02_ARATH,Q9CAQ5_ARATH DUF630 family protein, putative (DUF630 and DUF632) (F8K7.18 protein) (Uncharacterized protein At1g21740),DUF630 family protein, putative (DUF630 and DUF632) (Uncharacterized protein At1g77500) (Uncharacterized protein T5M16.9) 106726,98622 DUF630 family protein, putative (DUF630 and DUF632) (F8K7.18 protein) (Uncharacterized protein At1g21740),DUF630 family protein, putative (DUF630 and DUF632) (Uncharacterized protein At1g77500) (Uncharacterized protein T5M16.9) locus:2036900;,locus:2204740; AT1G21740,AT1G77500 DUF630 DUF632 domains containing protein Os05g0425000 protein A0A0P0WMK8 A0A0P0WMK8_ORYSJ Os05g0425000 OSNPB_050425000 ENOG411DX68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: BEST Arabidopsis thaliana protein match is oxidoreductase acting on NADH or NADPH (TAIR AT1G75260.1) Os09g0327500 protein A0A0N7KQK8 A0A0N7KQK8_ORYSJ Os09g0327500 OSNPB_090327500 ENOG411DX69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ca2+-ATPase N terminal autoinhibitory domain Probable calcium-transporting ATPase 6, plasma membrane-type (OsACA6) (EC 3.6.3.8) (Ca(2+)-ATPase isoform 6),Os05g0495600 protein (Fragment) Q65X71,A0A0N7KL09 ACA6_ORYSJ,A0A0N7KL09_ORYSJ ACA6 Os05g0495600 LOC_Os05g41580 OJ1579_G03.12,Os05g0495600 OSNPB_050495600 FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles. {ECO:0000250}. ENOG411E0R6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Transcription factor APG (Basic helix-loop-helix protein 106) (OsbHLH106) (Protein ANTAGONIST OF PGL1) (bHLH transcription factor bHLH106) Q6AT90 APG_ORYSJ APG Os05g0139100 LOC_Os05g04740 OSJNBa0069I13.9 OSJNBb0111O13.2 FUNCTION: Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}. MISCELLANEOUS: Plants silencing APG show enhanced bending of the lamina joints and produce grains increased in size, caused by elongated cells in lemma. {ECO:0000305|PubMed:22363621}. ENOG411E0RM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclic nucleotide-binding domain NA NA NA NA NA NA NA ENOG411DTPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CobW_C NA NA NA NA NA NA NA ENOG411DU4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os03g0741700 protein A0A0N7KI10 A0A0N7KI10_ORYSJ Os03g0741700 OSNPB_030741700 ENOG411DU4K dl3335w O23315 O23315_ARATH Embryo defective 2739 (Uncharacterized protein AT4g14590) (Uncharacterized protein dl3335w) Embryo defective; Globular-D. Meinke-2003 59035 Embryo defective 2739 (Uncharacterized protein AT4g14590) (Uncharacterized protein dl3335w) locus:2129935; AT4G14590 integrator complex subunit Os11g0171400 protein (Fragment) A0A0P0XZG5,A0A0P0XZ74 A0A0P0XZG5_ORYSJ,A0A0P0XZ74_ORYSJ Os11g0171400 OSNPB_110171400 ENOG411DU4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RINGv Os06g0340200 protein (Zinc finger (C3HC4-type RING finger)-like) (cDNA clone:J023003L01, full insert sequence) (cDNA clone:J023121A11, full insert sequence),Os06g0340200 protein (Fragment) Q5Z887,A0A0P0WWL6 Q5Z887_ORYSJ,A0A0P0WWL6_ORYSJ OJ1294_G12.27-1 P0428A03.13-1 Os06g0340200 OsJ_21237 OSNPB_060340200,Os06g0340200 OSNPB_060340200 ENOG411DU4M PYL5,PYL4 Q9FLB1,O80920 PYL5_ARATH,PYL4_ARATH Abscisic acid receptor PYL5 (ABI1-binding protein 3) (PYR1-like protein 5) (Regulatory components of ABA receptor 8),Abscisic acid receptor PYL4 (ABI1-binding protein 2) (PYR1-like protein 4) (Regulatory components of ABA receptor 10) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) in an ABA-independent manner but more efficiently when activated by ABA. Confers enhanced sensitivity to ABA (PubMed:19407143, PubMed:19624469, PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). {ECO:0000269|PubMed:19407143, ECO:0000269|PubMed:19624469, ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015}.,FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA (PubMed:19624469, PubMed:23844015, PubMed:21658606). Can be activated by both (-)-ABA and (+)-ABA (PubMed:23844015). {ECO:0000269|PubMed:19624469, ECO:0000269|PubMed:21658606, ECO:0000269|PubMed:23844015}. 22662,22435 Abscisic acid receptor PYL5 (ABI1-binding protein 3) (PYR1-like protein 5) (Regulatory components of ABA receptor 8),Abscisic acid receptor PYL4 (ABI1-binding protein 2) (PYR1-like protein 4) (Regulatory components of ABA receptor 10) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738] locus:2153549;,locus:2057175; AT5G05440,AT2G38310 abscisic acid receptor Os03g0297600 protein (Streptomyces cyclase/dehydrase family protein, expressed),Os01g0827800 protein Q10MS2,A0A0P0V9X6 Q10MS2_ORYSJ,A0A0P0V9X6_ORYSJ LOC_Os03g18600 Os03g0297600 OSNPB_030297600,Os01g0827800 OSNPB_010827800 ENOG411DU4N MXC9.18 F4JZI0,F4JZH9 F4JZI0_ARATH,F4JZH9_ARATH Las1-like family protein R-ATH-6791226; 67992,69291 Las1-like family protein preribosome, large subunit precursor [GO:0030687]; chromatin organization [GO:0006325]; endonucleolytic cleavage involved in rRNA processing [GO:0000478]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470] locus:2177068; AT5G12220 las1-like family Las1-like family protein, expressed (Os12g0189900 protein) (cDNA clone:J013050F15, full insert sequence) Q2QWN0 Q2QWN0_ORYSJ LOC_Os12g08800 Os12g0189900 OsJ_35471 OSNPB_120189900 ENOG411DU4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain-containing protein Os06g0104200 protein (Putative OsNAC7 protein) (Secondary wall NAC transcription factor 7) Q8H624 Q8H624_ORYSJ Os06g0104200 Os06g0104200 OsJ_19820 OSJNBa0075G19.40 OSNPB_060104200 ENOG411DU4C ATG6 Q9M367,A0A1I9LT68 BECN1_ARATH,A0A1I9LT68_ARATH Beclin-1-like protein (Autophagy protein 6),AUTOPHAGY 6 Due to pollen germination defects homozygotes cannot be obtained.,Heterozygous plants exhibit variable growth phenotypes including increased internodal length and decreased production of siliques. Many exhibit retarded growth and overall dwarf stature compared to wild-type plants.,Due to pollen germination defects homozygotes cannot be obtained. Pollen development is not affected. Complete male gametophyte defective-Y. Ohsumi-2007 FUNCTION: Required for normal plant development (PubMed:17339883, PubMed:17932459, PubMed:18227644). Required for pollen germination (PubMed:17339883, PubMed:17259285, PubMed:18227644). Required for autophagic activity. Required to limit the pathogen-associated cell death response (PubMed:17932459). May be involved in vacuolar protein sorting (PubMed:17259285). Binds to microtubules. May facilitate efficient recruitment of other ATG proteins to assemble scaffolds for autophagosome biogenesis (PubMed:26566764). {ECO:0000269|PubMed:17259285, ECO:0000269|PubMed:17339883, ECO:0000269|PubMed:17932459, ECO:0000269|PubMed:18227644, ECO:0000269|PubMed:26566764}. MISCELLANEOUS: Plants silencing ATG6 exhibit impaired autophagic activity and accelerated senescence. {ECO:0000269|PubMed:17932459}. R-ATH-1632852;R-ATH-5689880; 58504,53097 Beclin-1-like protein (Autophagy protein 6),AUTOPHAGY 6 cytoplasmic vesicle [GO:0031410]; phosphatidylinositol 3-kinase complex, class III, type I [GO:0034271]; phosphatidylinositol 3-kinase complex, class III, type II [GO:0034272]; pre-autophagosomal structure [GO:0000407]; autophagosome assembly [GO:0000045]; cellular response to nitrogen starvation [GO:0006995]; defense response to fungus [GO:0050832]; late endosome to vacuole transport [GO:0045324]; nucleophagy [GO:0044804]; pollen germination [GO:0009846]; protein targeting to vacuole [GO:0006623],autophagy [GO:0006914] locus:2076715; AT3G61710 beclin 1 protein Os01g0681400 protein,Beclin-1, putative, expressed (Expressed protein) (Os03g0644000 protein) (cDNA clone:J013066O06, full insert sequence) (cDNA clone:J013066P07, full insert sequence),Autophagy protein Apg6 containing protein, expressed (Os03g0258500 protein) Q0JKD4,Q60DN7,Q10NU3 Q0JKD4_ORYSJ,Q60DN7_ORYSJ,Q10NU3_ORYSJ Os01g0681400 Os01g0681400 OsJ_03022 OSNPB_010681400,Os03g0644000 LOC_Os03g44200 Os03g0644000 OSJNBa0038E17.21 OSNPB_030644000,Os03g0258500 LOC_Os03g15290 Os03g0258500 OsJ_10201 OSNPB_030258500 ENOG411DU4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA leucine-rich repeat protein Plant intracellular Ras-group-related LRR protein 5 (Intracellular Ras-group-related LRR protein 5) (OsIRL5),Os10g0572300 protein (Fragment) Q8S7M7,A0A0P0XY09 PIRL5_ORYSJ,A0A0P0XY09_ORYSJ IRL5 Os10g0572300 LOC_Os10g42190 OsJ_32547 OSJNBa0095C07.8,Os10g0572300 OSNPB_100572300 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. ENOG411DU4E Q9LKC2,Q8VY20,Q683C3,Q9LUI0,A0A1P8B8B1,A0A1P8BFB6,A0A1I9LN80,A0A1I9LN79 Q9LKC2_ARATH,Q8VY20_ARATH,Q683C3_ARATH,Q9LUI0_ARATH,A0A1P8B8B1_ARATH,A0A1P8BFB6_ARATH,A0A1I9LN80_ARATH,A0A1I9LN79_ARATH At5g43870 (Auxin canalization protein (DUF828)),Auxin canalization protein (DUF828) (Uncharacterized protein At4g14740),Auxin canalization protein (DUF828) 48644,51384,36282,51267,43552,40981,44504,36214 At5g43870 (Auxin canalization protein (DUF828)),Auxin canalization protein (DUF828) (Uncharacterized protein At4g14740),Auxin canalization protein (DUF828) plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2149514;,locus:2130185;,locus:2094414; AT5G43870,AT4G14740,AT3G22810 Plant pleckstrin homology-like region Expressed protein (Expressed protein (With alternative splicing)) (Os03g0635800 protein) (cDNA clone:J033072G11, full insert sequence),Os08g0393700 protein (Fragment),Os12g0604200 protein Q75GL1,A0A0N7KPT3,A0A0N7KUB7 Q75GL1_ORYSJ,A0A0N7KPT3_ORYSJ,A0A0N7KUB7_ORYSJ Os03g0635800 LOC_Os03g43510 Os03g0635800 OSJNBa0010N03.6 OSNPB_030635800,Os08g0393700 OSNPB_080393700,Os12g0604200 OSNPB_120604200 ENOG411DU4D PIN8 Q9LFP6 PIN8_ARATH Auxin efflux carrier component 8 (AtPIN8) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:22760640, PubMed:22540348). Increased frequency of aborted and misshaped pollen grains and decreased pollen germination (PubMed:22760640). {ECO:0000269|PubMed:22540348, ECO:0000269|PubMed:22760640}. FUNCTION: Component of the intracellular auxin-transport pathway in the male gametophyte (PubMed:20439545, PubMed:22540348). Involved in the regulation of auxin homeostasis in pollen (PubMed:22540348). Involved in the efflux of auxin from the endoplasmic reticulum into the cytoplasm (PubMed:22760640). PIN5 and PIN8 may have an antagonistic/compensatory activity (PubMed:22760640, PubMed:22990451). Involved in the control of vein patterning (PubMed:23437008, PubMed:24304505). Redundantly with PIN6, inhibits the vein-formation-promoting functions of PIN5 (PubMed:26560462). PIN5, PIN6, and PIN8 control vein network geometry, but they are expressed in mutually exclusive domains of leaf vascular cells (PubMed:26560462). {ECO:0000269|PubMed:20439545, ECO:0000269|PubMed:22540348, ECO:0000269|PubMed:22760640, ECO:0000269|PubMed:23437008, ECO:0000269|PubMed:24304505, ECO:0000269|PubMed:26560462, ECO:0000305|PubMed:22990451}. 40502 Auxin efflux carrier component 8 (AtPIN8) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin efflux [GO:0010315]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; pollen development [GO:0009555] DEVELOPMENTAL STAGE: Expressed at later stages of microgametogenesis, after the pollen has reached the tricellular stage and until pollen dehiscence (PubMed:22540348). Expressed during vein formation (PubMed:23437008). {ECO:0000269|PubMed:22540348, ECO:0000269|PubMed:23437008}. TISSUE SPECIFICITY: Expressed in veins of mature leaves (PubMed:26560462). Strongly expressed in pollen (PubMed:22760640, PubMed:22540348). {ECO:0000269|PubMed:22540348, ECO:0000269|PubMed:22760640, ECO:0000269|PubMed:26560462}. locus:2147835; AT5G15100 auxin efflux carrier component Probable auxin efflux carrier component 8 (OsPIN8) Q0JJV0 PIN8_ORYSJ PIN8 Os01g0715600 LOC_Os01g51780 OsJ_03248 FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000305}. ENOG411DU4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA magnesium ion transmembrane transporter activity Putative magnesium transporter MRS2-H Q10S25 MRS2H_ORYSJ MRS2-H Os03g0137700 LOC_Os03g04480 OsJ_09331 FUNCTION: Putative magnesium transporter. {ECO:0000250}. ENOG411DU4F GRIP,ATGRIP Q8S2T0,A0A1R7T391,A0A1R7T390 GRIP_ARATH,A0A1R7T391_ARATH,A0A1R7T390_ARATH Protein GRIP (AtGRIP),Golgi-localized GRIP domain-containing protein FUNCTION: Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. {ECO:0000250}. 89859,77458,83625 Protein GRIP (AtGRIP),Golgi-localized GRIP domain-containing protein synaptonemal complex [GO:0000795]; trans-Golgi network [GO:0005802]; Golgi vesicle transport [GO:0048193]; protein targeting to Golgi [GO:0000042]; reciprocal meiotic recombination [GO:0007131] locus:2156922; AT5G66030 NA Os07g0472500 protein (Plectin-like protein) Q7F099 Q7F099_ORYSJ P0675B10.124 Os07g0472500 OSNPB_070472500 ENOG411DU4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411DU4Q O64823,Q1PE15 MCU2_ARATH,MCU1_ARATH Calcium uniporter protein 2, mitochondrial,Calcium uniporter protein 1, mitochondrial FUNCTION: Mitochondrial inner membrane calcium uniporter that mediates calcium uptake into mitochondria. Constitutes a pore-forming and calcium-conducting subunit. Mitochondrial calcium homeostasis plays key roles in cellular physiology and regulates cell bioenergetics, cytoplasmic calcium signals and activation of cell death pathways. {ECO:0000250|UniProtKB:Q8NE86}. R-ATH-8949215; 38177,38349 Calcium uniporter protein 2, mitochondrial,Calcium uniporter protein 1, mitochondrial integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; calcium channel activity [GO:0005262]; uniporter activity [GO:0015292] locus:2049013;,locus:2115205; AT2G23790,AT4G36820 Protein of unknown function DUF607 Expressed protein (Os10g0501500 protein) Q8LNF6 Q8LNF6_ORYSJ LOC_Os10g35770 Os10g0501500 OSJNBa0078O01.11 OSNPB_100501500 ENOG411DU4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA boron transporter NA NA NA NA NA NA NA ENOG411DU4U UPL7 Q9SCQ2 UPL7_ARATH E3 ubiquitin-protein ligase UPL7 (Ubiquitin-protein ligase 7) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL7) FUNCTION: Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.26 128486 E3 ubiquitin-protein ligase UPL7 (Ubiquitin-protein ligase 7) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL7) cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630] locus:2101973; AT3G53090 Ubiquitin-protein ligase Os03g0683866 protein (Putative ubiquitin protein ligase) Q9AUK0 Q9AUK0_ORYSJ OSJNBb0072E24.15 Os03g0683866 OSNPB_030683866 ENOG411DU4T UGT91B1 Q9LSM0 U91B1_ARATH UDP-glycosyltransferase 91B1 (EC 2.4.1.-) ARA:AT5G65550-MONOMER; 2.4.1.- 51972 UDP-glycosyltransferase 91B1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2155720; AT5G65550 UDP-rhamnose rhamnosyltransferase Glycosyltransferase (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) (Fragment),Os07g0201300 protein,Os07g0201500 protein,Os08g0340525 protein Q6Z4K7,A0A0P0W4C4,A0A0P0VQY8,A0A0P0X3H5,A0A0P0X3M3,A0A0P0X3P6,A0A0P0XEL2 Q6Z4K7_ORYSJ,A0A0P0W4C4_ORYSJ,A0A0P0VQY8_ORYSJ,A0A0P0X3H5_ORYSJ,A0A0P0X3M3_ORYSJ,A0A0P0X3P6_ORYSJ,A0A0P0XEL2_ORYSJ Os07g0202000 OSJNBa0081K20.13 OSNPB_070202000,Os03g0804900 OSNPB_030804900,Os02g0803900 OSNPB_020803900,Os07g0201800 OSNPB_070201800,Os07g0201300 OSNPB_070201300,Os07g0201500 OSNPB_070201500,Os08g0340525 OSNPB_080340525 ENOG411DU4W Q8S8G6 Q8S8G6_ARATH Alpha/beta-Hydrolases superfamily protein (At2g18245) (Expressed protein) 44847 Alpha/beta-Hydrolases superfamily protein (At2g18245) (Expressed protein) hydrolase activity [GO:0016787] locus:505006253; AT2G18245 transmembrane protein 53-like Os02g0133900 protein Q6Z6I1 Q6Z6I1_ORYSJ Os02g0133900 OSNPB_020133900 P0030G11.19 P0585B01.4 ENOG411DU4V ADR1 Q9FW44,Q9SZA7,Q9LZ25,Q9LVT1,Q9LIM8 ADR1_ARATH,DRL29_ARATH,DRL30_ARATH,DRL39_ARATH,Q9LIM8_ARATH Disease resistance protein ADR1 (Activated disease resistance protein 1),Probable disease resistance protein At4g33300,Probable disease resistance protein At5g04720,Putative disease resistance protein At5g47280,Powdery mildew resistance protein, RPW8 domain-containing protein FUNCTION: Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. {ECO:0000269|PubMed:12906111}.,FUNCTION: Probable disease resistance protein. {ECO:0000250}.,FUNCTION: Potential disease resistance protein. {ECO:0000250}. 90129,91819,91537,70082,25278 Disease resistance protein ADR1 (Activated disease resistance protein 1),Probable disease resistance protein At4g33300,Probable disease resistance protein At5g04720,Putative disease resistance protein At5g47280,Powdery mildew resistance protein, RPW8 domain-containing protein plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626]; response to karrikin [GO:0080167]; response to other organism [GO:0051707]; response to water deprivation [GO:0009414]; signal transduction [GO:0007165],apoplast [GO:0048046]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to bacterium [GO:0042742],ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response to bacterium [GO:0042742],ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952] locus:2006932;,locus:2119196;,locus:2175433;,locus:2171479;,locus:2079236; AT1G33560,AT4G33300,AT5G04720,AT5G47280,AT3G26470 Disease resistance protein Leucine Rich Repeat family protein, expressed (Os12g0586000 protein) Q0IM92 Q0IM92_ORYSJ Os12g0586000 LOC_Os12g39620 Os12g0586000 OSNPB_120586000 ENOG411DU49 APR1,APR3 P92979,P92980,F4JKD5 APR1_ARATH,APR3_ARATH,F4JKD5_ARATH 5'-adenylylsulfate reductase 1, chloroplastic (EC 1.8.4.9) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 19) (PAPS reductase homolog 19) (Prh-19) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 1) (APS sulfotransferase 1) (Thioredoxin-independent APS reductase 1),5'-adenylylsulfate reductase 3, chloroplastic (EC 1.8.4.9) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 26) (PAPS reductase homolog 26) (Prh-26) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 3) (APS sulfotransferase 3) (Thioredoxin-independent APS reductase 3),APS reductase 3 FUNCTION: Reduces sulfate for Cys biosynthesis. Substrate preference is adenosine-5'-phosphosulfate (APS) >> 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Uses glutathione or DTT as source of protons. MetaCyc:AT4G04610-MONOMER;,MetaCyc:AT4G21990-MONOMER; 1.8.4.9; 1.8.4.9 51714,50695,37991 5'-adenylylsulfate reductase 1, chloroplastic (EC 1.8.4.9) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 19) (PAPS reductase homolog 19) (Prh-19) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 1) (APS sulfotransferase 1) (Thioredoxin-independent APS reductase 1),5'-adenylylsulfate reductase 3, chloroplastic (EC 1.8.4.9) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 26) (PAPS reductase homolog 26) (Prh-26) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 3) (APS sulfotransferase 3) (Thioredoxin-independent APS reductase 3),APS reductase 3 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 4 iron, 4 sulfur cluster binding [GO:0051539]; adenylyl-sulfate reductase (glutathione) activity [GO:0033741]; adenylyl-sulfate reductase activity [GO:0009973]; metal ion binding [GO:0046872]; phosphoadenylyl-sulfate reductase (thioredoxin) activity [GO:0004604]; cell redox homeostasis [GO:0045454]; cysteine biosynthetic process [GO:0019344]; sulfate assimilation [GO:0000103]; sulfate reduction [GO:0019419],chloroplast [GO:0009507]; 4 iron, 4 sulfur cluster binding [GO:0051539]; adenylyl-sulfate reductase (glutathione) activity [GO:0033741]; adenylyl-sulfate reductase activity [GO:0009973]; metal ion binding [GO:0046872]; phosphoadenylyl-sulfate reductase (thioredoxin) activity [GO:0004604]; cell redox homeostasis [GO:0045454]; cysteine biosynthetic process [GO:0019344]; sulfate assimilation [GO:0000103]; sulfate reduction [GO:0019419],oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; sulfate reduction [GO:0019419] TISSUE SPECIFICITY: Leaves, roots and stem. locus:2125786;,locus:2120628; AT4G04610,AT4G21990 reductase Probable 5'-adenylylsulfate reductase 1, chloroplastic (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 1) (APS sulfotransferase 1) (Adenosine 5'-phosphosulfate reductase-like 1) (APR-like1) (OsAPRL1) (Thioredoxin-independent APS reductase 1),Os07g0509800 protein (Fragment) Q6Z4A7,A0A0P0X6V5 APR1_ORYSJ,A0A0P0X6V5_ORYSJ APR1 Os07g0509800 LOC_Os07g32570 P0409B11.14,Os07g0509800 OSNPB_070509800 FUNCTION: Reduces sulfate for Cys biosynthesis. {ECO:0000250}. ENOG411DU48 Q494P3,A0A1P8AU45,F4HYF4 Q494P3_ARATH,A0A1P8AU45_ARATH,F4HYF4_ARATH At3g17770 (Dihydroxyacetone kinase),Dihydroxyacetone kinase ARA:AT3G17770-MONOMER; R-ATH-70350; 61921,58309,61925 At3g17770 (Dihydroxyacetone kinase),Dihydroxyacetone kinase ATP binding [GO:0005524]; glycerone kinase activity [GO:0004371]; glycerol metabolic process [GO:0006071] locus:2089784;,locus:2007680; AT3G17770,AT1G48430 34-dihydroxy-2-butanone kinase 3,4-dihydroxy-2-butanone kinase, putative, expressed (Os03g0719300 protein) (Putative DAK2 domain containing protein) (cDNA clone:001-123-G11, full insert sequence),Os03g0719300 protein (Fragment) Q6ASW3,A0A0P0W2B3 Q6ASW3_ORYSJ,A0A0P0W2B3_ORYSJ B1377B10.5 LOC_Os03g51000 Os03g0719300 OsJ_12371 OSNPB_030719300,Os03g0719300 OSNPB_030719300 ENOG411DU41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411DU40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides NA NA NA NA NA NA NA ENOG411DU43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os09g0334500 protein (WRKY family transcription factor-like) Q6ERI5 Q6ERI5_ORYSJ Os09g0334500 OJ1253_E02.7 OsJ_28937 OSNPB_090334500 P0466E03.22 ENOG411DU45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA harpin-induced protein 1 domain containing protein expressed Harpin induced protein 4 (OSJNBa0064G10.14 protein) (Os04g0677300 protein) Q7XKB7 Q7XKB7_ORYSJ NDR4 Os04g0677300 OsJ_16625 OSJNBa0064G10.14 OSNPB_040677300 ENOG411DU44 FEZ,ANAC094 Q9ZVH0,Q9FIW5 FEZ_ARATH,NAC94_ARATH Protein FEZ (NAC domain-containing protein 9) (ANAC009),Putative NAC domain-containing protein 94 (ANAC094) DISRUPTION PHENOTYPE: Fewer root cap layers; reduced number of columella (COL) and lateral root cap (LRC) cell layers from late embryogenesis due to impaired periclinal divisions in epidermal (Epi)/LRC and COL stem cells. {ECO:0000269|PubMed:19081078}. Homozygotes have a reduced number of columella root cap (COL) and lateral root cap (LRC) cell layers. Meristem length meristem cell number and root length are comparable to WT. Periclinal division rates in the COL and LRC stem cells are reduced. FUNCTION: Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. 47805,38303 Protein FEZ (NAC domain-containing protein 9) (ANAC009),Putative NAC domain-containing protein 94 (ANAC094) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of asymmetric cell division [GO:0045770]; response to auxin [GO:0009733]; root cap development [GO:0048829]; somatic stem cell division [GO:0048103]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. locus:2202820;,locus:2167037; AT1G26870,AT5G39820 NAC domain-containing protein Os08g0436700 protein (Putative NAC domain protein),Os02g0745250 protein,Os02g0745300 protein Q6Z538,A0A0P0VPE0,A0A0P0VPI4 Q6Z538_ORYSJ,A0A0P0VPE0_ORYSJ,A0A0P0VPI4_ORYSJ Os08g0436700 OsJ_27451 OSJNBa0016C11.11 OSNPB_080436700,Os02g0745250 OSNPB_020745250,Os02g0745300 OSNPB_020745300 ENOG411DU47 EIL3 O23116,A0A1P8AT39 EIL3_ARATH,A0A1P8AT39_ARATH ETHYLENE INSENSITIVE 3-like 3 protein,ETHYLENE-INSENSITIVE3-like 3 reduced plant growth under sulfate starvation condition. reduced sulfate uptake. Sensitive to sulfate starvation-H. Takahashi-2006 FUNCTION: Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. 64042,62781 ETHYLENE INSENSITIVE 3-like 3 protein,ETHYLENE-INSENSITIVE3-like 3 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion [GO:0071281]; ethylene-activated signaling pathway [GO:0009873]; regulation of sulfur metabolic process [GO:0042762]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2027754; AT1G73730 ethylene insensitive 3-like 3 Os09g0490200 protein,Os09g0490200 protein (cDNA clone:J013047J08, full insert sequence) Q0J0P1,A3C052 Q0J0P1_ORYSJ,A3C052_ORYSJ Os09g0490200 OSNPB_090490200,Os09g0490200 OsJ_29834 OSNPB_090490200 ENOG411DU46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411EAI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytosol aminopeptidase family catalytic domain NA NA NA NA NA NA NA ENOG411EAI6 A0A1P8AWB7,F4IE43,A0A1P8AW96 A0A1P8AWB7_ARATH,F4IE43_ARATH,A0A1P8AW96_ARATH TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein 28046,37167,38499 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; sphingosine N-acyltransferase activity [GO:0050291]; ceramide biosynthetic process [GO:0046513] locus:2028771; AT1G26200 CONTAINS InterPro DOMAIN s Longevity assurance LAG1 LAC1 (InterPro IPR016439) TRAM LAG1 and CLN8 homology (InterPro IPR006634) NA NA NA NA NA NA NA ENOG411EAI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EAI8 F13B4.9 Q9FZ68,Q5XVL0 Q9FZ68_ARATH,Q5XVL0_ARATH Alpha/beta-Hydrolases superfamily protein (F13B4.9 protein),Alpha/beta-Hydrolases superfamily protein 40404,29448 Alpha/beta-Hydrolases superfamily protein (F13B4.9 protein),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787],serine-type peptidase activity [GO:0008236] locus:2009967; AT1G13610 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EAID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxidoreductase FAD-binding domain NA NA NA NA NA NA NA ENOG411EAIB SFH14,MDA7.22 F4K6D3,A0A1P8BD15 SFH14_ARATH,A0A1P8BD15_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH14 (Protein SEC FOURTEEN HOMOLOGS 14) (AtSFH14),Sec14p-like phosphatidylinositol transfer family protein FUNCTION: Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}. 66258,56481 Phosphatidylinositol/phosphatidylcholine transfer protein SFH14 (Protein SEC FOURTEEN HOMOLOGS 14) (AtSFH14),Sec14p-like phosphatidylinositol transfer family protein Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; protein transport [GO:0015031] locus:2161765; AT5G56160 CRAL_TRIO_N NA NA NA NA NA NA NA ENOG411EAIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411E0RQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: calmodulin-binding family Calmodulin-binding family protein, putative, expressed (Os03g0167200 protein) (cDNA clone:J013073I08, full insert sequence) Q10R95 Q10R95_ORYSJ Os03g0167200 LOC_Os03g07110 Os03g0167200 OSNPB_030167200 ENOG411E0RS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Allinase NA NA NA NA NA NA NA ENOG411EHC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EDC4 RD19A,RD19B P43296,P43295 RD19A_ARATH,RD19B_ARATH Cysteine protease RD19A (EC 3.4.22.-) (Protein RESPONSIVE TO DEHYDRATION 19) (RD19),Probable cysteine protease RD19B (EC 3.4.22.-) (RD19-like protein 1) (Thiol protease A1494) Sensitive to Ralstonia solanacearum-L. Deslandes-2008 FUNCTION: Probable thiol protease (By similarity). Required for RRS1-mediated resistance against Ralstonia solanacearum. Plays a crucial role as host factor for PopP2-triggered RRS1-mediated resistance. Interacts with the R.solanacearum type III effector PopP2 to form a nuclear complex that is required for activation of the RRS1-mediated resistance response (PubMed:18708476). {ECO:0000250|UniProtKB:P43297, ECO:0000269|PubMed:18708476}.,FUNCTION: Probable thiol protease. {ECO:0000250|UniProtKB:P43297}. R-ATH-2132295; 3.4.22.- 40419,39819 Cysteine protease RD19A (EC 3.4.22.-) (Protein RESPONSIVE TO DEHYDRATION 19) (RD19),Probable cysteine protease RD19B (EC 3.4.22.-) (RD19-like protein 1) (Thiol protease A1494) extracellular space [GO:0005615]; lysosome [GO:0005764]; lytic vacuole [GO:0000323]; nucleus [GO:0005634]; vacuole [GO:0005773]; cysteine-type endopeptidase activity [GO:0004197]; defense response to bacterium [GO:0042742]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],extracellular space [GO:0005615]; lysosome [GO:0005764]; lytic vacuole [GO:0000323]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2120222;,locus:2050145; AT4G39090,AT2G21430 Inhibitor_I29 NA NA NA NA NA NA NA ENOG411EDC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA Os11g0650600 protein (Fragment),Os11g0650500 protein A0A0P0Y4T9,A0A0P0Y4V4 A0A0P0Y4T9_ORYSJ,A0A0P0Y4V4_ORYSJ Os11g0650600 OSNPB_110650600,Os11g0650500 OSNPB_110650500 ENOG411EDC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family NA NA NA NA NA NA NA ENOG411EDCV TINY Q39127 TINY_ARATH Ethylene-responsive transcription factor TINY FUNCTION: Putative transcriptional activator. 23942 Ethylene-responsive transcription factor TINY nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2145249; AT5G25810 Transcription factor NA NA NA NA NA NA NA ENOG411EDCT RTNLB4,RTNLB3 Q9FFS0,Q9SH59,F4I596 RTNLD_ARATH,RTNLC_ARATH,F4I596_ARATH Reticulon-like protein B4 (AtRTNLB4) (VirB2-interacting protein 3),Reticulon-like protein B3 (AtRTNLB3),Reticulon-like protein FUNCTION: Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus. {ECO:0000269|PubMed:15494553}. 28949,28696,30528 Reticulon-like protein B4 (AtRTNLB4) (VirB2-interacting protein 3),Reticulon-like protein B3 (AtRTNLB3),Reticulon-like protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum tubular network [GO:0071782]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; endoplasmic reticulum tubular network organization [GO:0071786],endoplasmic reticulum tubular network [GO:0071782]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; vacuolar membrane [GO:0005774]; endoplasmic reticulum tubular network organization [GO:0071786],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2160447;,locus:2024557; AT5G41600,AT1G64090 reticulon family NA NA NA NA NA NA NA ENOG411EDCU NAC099 Q9FJU6,A0A1P8B9R1,A0A1P8B9R4 Q9FJU6_ARATH,A0A1P8B9R1_ARATH,A0A1P8B9R4_ARATH NAC domain containing protein 99 43914,46896,45435 NAC domain containing protein 99 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2165031; AT5G56620 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EDCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411EDCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Trypsin NA NA NA NA NA NA NA ENOG411EDCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox NA NA NA NA NA NA NA ENOG411EDCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF869) Os10g0162400 protein (Fragment),Expressed protein (Os03g0246500 protein) Q0IYT8,Q10P54 Q0IYT8_ORYSJ,Q10P54_ORYSJ Os10g0162400 OSNPB_100162400,Os03g0246500 LOC_Os03g14250 Os03g0246500 OSNPB_030246500 ENOG411EDCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EDCJ A0A1P8B3I2,F4JVY5,F4JVY3,A8MS81 A0A1P8B3I2_ARATH,F4JVY5_ARATH,F4JVY3_ARATH,A8MS81_ARATH Rho GTPase-activating protein 17128,16576,25348,25477 Rho GTPase-activating protein locus:2125944; AT4G33130 NA NA NA NA NA NA NA NA ENOG411EDCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase Mutator family Os07g0248900 protein (Fragment),Os12g0621300 protein (Fragment),Os03g0215600 protein (Fragment) Q0D7H0,A0A0P0YCI4,A0A0P0YCA4,A0A0P0VUZ6 Q0D7H0_ORYSJ,A0A0P0YCI4_ORYSJ,A0A0P0YCA4_ORYSJ,A0A0P0VUZ6_ORYSJ Os07g0248900 Os07g0248900 OSNPB_070248900,Os12g0621300 OSNPB_120621300,Os03g0215600 OSNPB_030215600 ENOG411EFVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 family tetramerisation domain NA NA NA NA NA NA NA ENOG411EFVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0694100 protein A0A0P0XB56 A0A0P0XB56_ORYSJ Os07g0694100 OSNPB_070694100 ENOG411EFVY FAX7 O64847 FAX7_ARATH Protein FATTY ACID EXPORT 7 (At-FAX7) FUNCTION: May be involved in free fatty acids export. {ECO:0000250|UniProtKB:Q93V66}. MISCELLANEOUS: For all TMEM14 proteins, 4 hydrophobic alpha-helical domains are predicted. However, NMR structure determination of the human TMEM14A showed that only 3 of these helices are membrane-spaning while the amphiphilic N-terminal helix is probably located at the lipid micelle-water interface. {ECO:0000305|PubMed:25646734}. 11108 Protein FATTY ACID EXPORT 7 (At-FAX7) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739] locus:2057721; AT2G26240 Transmembrane proteins 14C NA NA NA NA NA NA NA ENOG411EI05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0506400 protein Q65X53 Q65X53_ORYSJ Os05g0506400 OJ1123_F01.14 OSNPB_050506400 ENOG411EI0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os04g0563550 protein A0A0P0WDH0 A0A0P0WDH0_ORYSJ Os04g0563550 OSNPB_040563550 ENOG411EI0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dos2-interacting transcription regulator of RNA-Pol-II NA NA NA NA NA NA NA ENOG411EBZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EBZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Autophagocytosis associated protein (Atg3) N-terminal domain NA NA NA NA NA NA NA ENOG411EBZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EBZS Q681A5 Q681A5_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Uncharacterized protein At1g17540) 80575 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Uncharacterized protein At1g17540) ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950] locus:2007908; AT1G17540 STYKc NA NA NA NA NA NA NA ENOG411EBZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EJJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2CI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Putative cyclin-D2-3 (G1/S-specific cyclin-D2-3) (CycD2;3),Os03g0392000 protein Q10K98,A0A0P0VYB0 CCD23_ORYSJ,A0A0P0VYB0_ORYSJ CYCD2-3 Os03g0392000 LOC_Os03g27420 OSJNBa0065F09.8,Os03g0392000 OSNPB_030392000 ENOG411DR08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os07g0291750 protein (Fragment),Os07g0293000 protein A0A0P0X5N5,A0A0P0X4L9 A0A0P0X5N5_ORYSJ,A0A0P0X4L9_ORYSJ Os07g0291750 OSNPB_070291750,Os07g0293000 OSNPB_070293000 ENOG411DR02 LPR1,LPR2 F4I4K5,Q949X9 LPR1_ARATH,LPR2_ARATH Multicopper oxidase LPR1 (EC 1.-.-.-) (Protein LOW PHOSPHATE ROOT 1),Multicopper oxidase LPR2 (EC 1.-.-.-) (Protein LOW PHOSPHATE ROOT 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced inhibition of primary root growth in low inorganic phosphate conditions. {ECO:0000269|PubMed:17496893, ECO:0000269|PubMed:19666499}. Long primary root when grown on low Pi. Root growth resistant to limited phosphate-T. Desnos-2007 FUNCTION: Multicopper oxidase that may be involved in copper homeostasis and oxidative stress response, and that is necessary for root growth inhibition by low phosphate conditions. Functions together with LPR2 and PDR2 in a common pathway that adjusts root meristem activity to phosphate availability. Oxidizes the substrate 2,2'-azinobis-(3-ethylbenzthiazoline-6-sulphonate) in vitro. {ECO:0000269|PubMed:17496893, ECO:0000269|PubMed:19666499}.,FUNCTION: Multicopper oxidase that may be involved in copper homeostasis and oxidative stress response, and that is necessary for root growth inhibition by low phosphate conditions. Functions together with LPR1 and PDR2 in a common pathway that adjusts root meristem activity to phosphate availability. {ECO:0000269|PubMed:17496893, ECO:0000269|PubMed:19666499}. ARA:GQT-2564-MONOMER; 1.-.-.- 65998,66165 Multicopper oxidase LPR1 (EC 1.-.-.-) (Protein LOW PHOSPHATE ROOT 1),Multicopper oxidase LPR2 (EC 1.-.-.-) (Protein LOW PHOSPHATE ROOT 2) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; copper ion binding [GO:0005507]; oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [GO:0016682]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; cellular response to phosphate starvation [GO:0016036]; meristem maintenance [GO:0010073]; response to karrikin [GO:0080167],cell wall [GO:0005618]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; cellular response to phosphate starvation [GO:0016036]; meristem maintenance [GO:0010073] locus:2017699;,locus:2026326; AT1G23010,AT1G71040 Spore coat protein Multicopper oxidase LPR1 homolog 2 (EC 1.-.-.-),Multicopper oxidase LPR1 homolog 3 (EC 1.-.-.-),Multicopper oxidase LPR1 homolog 1 (EC 1.-.-.-),Multicopper oxidase LPR1 homolog 4 (EC 1.-.-.-),Multicopper oxidase LPR1 homolog 5 (EC 1.-.-.-) (OsSTA2) Q5ZE07,Q5ZE00,Q9AWU4,Q7F757,A2ZNT5 LPR2_ORYSJ,LPR3_ORYSJ,LPR1_ORYSJ,LPR4_ORYSJ,LPR5_ORYSJ LPR2 Os01g0126200 LOC_Os01g03549 P0409B08.2,LPR3 Os01g0127000 LOC_Os01g03630 P0409B08.15,LPR1 Os01g0126100 LOC_Os01g03530 P0037C04.37 P0044F08.18,LPR4 Os01g0126900 LOC_Os01g03620 P0044F08.29 P0409B08.14,LPR5 Os01g0127200 LOC_Os01g03640 OsJ_00218 P0409B08.18 FUNCTION: Multicopper oxidase that may play a role in the maintenance of inorganic phosphate homeostasis. {ECO:0000250|UniProtKB:Q5ZE00}.,FUNCTION: Multicopper oxidase that may play a role in the maintenance of inorganic phosphate homeostasis. {ECO:0000305|PubMed:27716044}. ENOG411DR03 Q67YE9,A0A1I9LQC8,Q5PP40,A0A1I9LQC7 Q67YE9_ARATH,A0A1I9LQC8_ARATH,Q5PP40_ARATH,A0A1I9LQC7_ARATH SET domain-containing protein (mRNA, clone: RAFL25-03-G23),SET domain-containing protein,At3g55080 (SET domain-containing protein) 40616,43403,52692,40040 SET domain-containing protein (mRNA, clone: RAFL25-03-G23),SET domain-containing protein,At3g55080 (SET domain-containing protein) protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026] locus:2097253; AT3G55080 Inherit from KOG: SET domain containing 6 Os01g0976450 protein A0A0P0VDF3 A0A0P0VDF3_ORYSJ Os01g0976450 OSNPB_010976450 ENOG411DR00 F24K9.7,EIF3G2,EIF3G1 Q9SSJ0,Q9FI86,F4J6A1 Q9SSJ0_ARATH,Q9FI86_ARATH,F4J6A1_ARATH Eukaryotic translation initiation factor 3 subunit G (eIF3g) (Eukaryotic translation initiation factor 3 RNA-binding subunit) (eIF-3 RNA-binding subunit) (Eukaryotic translation initiation factor 3 subunit 4) FUNCTION: RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. {ECO:0000256|HAMAP-Rule:MF_03006}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 32715,34688,35663 Eukaryotic translation initiation factor 3 subunit G (eIF3g) (Eukaryotic translation initiation factor 3 RNA-binding subunit) (eIF-3 RNA-binding subunit) (Eukaryotic translation initiation factor 3 subunit 4) eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446],eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446] locus:2153659;,locus:2080772; AT3G11400,AT5G06000 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex (By similarity) Eukaryotic translation initiation factor 3 subunit G (eIF3g) (Eukaryotic translation initiation factor 3 RNA-binding subunit) (eIF-3 RNA-binding subunit) (Eukaryotic translation initiation factor 3 subunit 4) Q6K4P1,A0A0P0VQQ7 Q6K4P1_ORYSJ,A0A0P0VQQ7_ORYSJ Os02g0788400 OsJ_08663 OSJNBa0054K20.22 OSNPB_020788400,Os02g0788300 OSNPB_020788300 FUNCTION: RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. {ECO:0000256|HAMAP-Rule:MF_03006}. ENOG411DR01 F4HRC0 F4HRC0_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 60403 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein nucleus [GO:0005634]; RNA trimethylguanosine synthase activity [GO:0071164]; 7-methylguanosine cap hypermethylation [GO:0036261]; 7-methylguanosine RNA capping [GO:0009452] locus:1005716684; AT1G45231 RNA cap guanine-N2 methyltransferase Os03g0396900 protein (WW domain-containing protein, putative, expressed) (cDNA clone:J033131G05, full insert sequence),Os03g0396900 protein (Fragment) Q94LF9,A0A0N7KHE2 Q94LF9_ORYSJ,A0A0N7KHE2_ORYSJ LOC_Os03g27930 Os03g0396900 OsJ_11156 OSJNBb0004M10.19 OSNPB_030396900,Os03g0396900 OSNPB_030396900 ENOG411DR06 Q8S8F1,F4IP26 Q8S8F1_ARATH,F4IP26_ARATH Expressed protein (Translation initiation factor) (Uncharacterized protein At2g36885),Translation initiation factor 27492,27363 Expressed protein (Translation initiation factor) (Uncharacterized protein At2g36885),Translation initiation factor integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; translation initiation factor activity [GO:0003743],integral component of membrane [GO:0016021]; translation initiation factor activity [GO:0003743] locus:505006302; AT2G36885 NA Expressed protein (Os03g0137600 protein) (cDNA clone:001-019-B03, full insert sequence) (cDNA clone:006-202-H12, full insert sequence) (cDNA clone:006-209-F01, full insert sequence) Q10S26 Q10S26_ORYSJ Os03g0137600 LOC_Os03g04470 Os03g0137600 OSNPB_030137600 ENOG411DR07 Q941A7,A0A1P8B7H4 Q941A7_ARATH,A0A1P8B7H4_ARATH AT4g20760/F21C20_110 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein 32479,34770 AT4g20760/F21C20_110 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein locus:2121469; AT4G20760 short chain dehydrogenase Os12g0609500 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (cDNA clone:J023113G07, full insert sequence) Q2QMC5 Q2QMC5_ORYSJ LOC_Os12g41590 Os12g0609500 OsJ_36825 OSNPB_120609500 ENOG411DR04 AGL8,CAL Q38876,Q39081 AGL8_ARATH,CAL_ARATH Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL),Transcription factor CAULIFLOWER (AtCAL) (Agamous-like MADS-box protein AGL10) Double mutant displayed extremely small valves and very large rough and distorted repla indicating a strong enhancement of the phenotypes of the two single mutants both in valves and replum.,The ectopic formation of secondary walls normally seen in the ful mutant is suppressed in the double mutant.,Flower meristems behave like inflorescence meristems and continuously elaborate new meristems resulting in the cauliflower phenotype. Eventually flowers resembling those of ap1 single mutants eventually appear and set seeds.,Inflorescences take 7-10 days longer than ap1 cal mutant to begin producing flowers.,No visible phenotype. Short siliques that are crowded with small seeds; Reduced fertility-R. Martienssen-1998 FUNCTION: Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique. Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND. {ECO:0000269|PubMed:10648231, ECO:0000269|PubMed:15035986, ECO:0000269|PubMed:9502732}.,FUNCTION: Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. Positively regulates the APETALA1 and LEAFY expression. {ECO:0000269|PubMed:10648231, ECO:0000269|Ref.6}. MISCELLANEOUS: Mutations in the CAL gene result in a characteristic proliferation of inflorescence meristems in place of floral meristems. The fragment expressed in cal-5 mutant is homolog to the CAL proteins present in Brassica oleracea var. botrytis and may thus explain the 'cauliflower'-shaped floral meristem (PubMed:7824951). {ECO:0000305|PubMed:7824951}. 27536,30187 Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL),Transcription factor CAULIFLOWER (AtCAL) (Agamous-like MADS-box protein AGL10) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; fruit development [GO:0010154]; maintenance of inflorescence meristem identity [GO:0010077]; positive regulation of flower development [GO:0009911]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; floral meristem determinacy [GO:0010582]; positive regulation of flower development [GO:0009911]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed at an early stage of floral initiation. TISSUE SPECIFICITY: Vascular tissue of cauline leaves, floral shoot apex and valves of carpels and fruits. {ECO:0000269|PubMed:9502732}.,TISSUE SPECIFICITY: Expressed in young flower primordia. locus:2173522;,locus:2028830; AT5G60910,AT1G26310 transcription factor MADS-box transcription factor 14 (FDRMADS6) (OsMADS14) (Protein AGAMOUS-like 10) (Protein APETALA1-like B) (RMADS211),MADS-box transcription factor 15 (FDRMADS3) (OsMADS15) (Protein APETALA1-like A) (RMADS215),Os07g0108900 protein,Os03g0752800 protein Q10CQ1,Q6Q9I2,A0A0P0X1J5,A0A0P0W361 MAD14_ORYSJ,MAD15_ORYSJ,A0A0P0X1J5_ORYSJ,A0A0P0W361_ORYSJ MADS14 AGL10 RAP1B Os03g0752800 LOC_Os03g54160 OJ1112_G08.13 OsJ_12598 OSJNBa0032E21.04 OSJNBa0047E24.2,MADS15 RAP1A Os07g0108900 LOC_Os07g01820 OJ1567_G09.109-1 P0585H11.124-1,Os07g0108900 OSNPB_070108900,Os03g0752800 OSNPB_030752800 FUNCTION: Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.,FUNCTION: Probable transcription factor. ENOG411DR05 MXI22.1 Q945N1 Q945N1_ARATH AT5g50310/MXI22_1 (Galactose oxidase/kelch repeat superfamily protein) 76142 AT5g50310/MXI22_1 (Galactose oxidase/kelch repeat superfamily protein) locus:2177542; AT5G50310 Kelch domain-containing protein Os04g0483600 protein,Os04g0483600 protein (Fragment) Q0JC97,A0A0P0WBL8 Q0JC97_ORYSJ,A0A0P0WBL8_ORYSJ Os04g0483600 Os04g0483600 OSNPB_040483600,Os04g0483600 OSNPB_040483600 ENOG411DR0X Q5BPZ5 LAZH2_ARATH Protein LAZ1 homolog 2 (Lazarus1 homolog 2) 45537 Protein LAZ1 homolog 2 (Lazarus1 homolog 2) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transport [GO:0006810] locus:2201235; AT1G23070 transmembrane protein 184C-like Os03g0406900 protein Q60ED7 Q60ED7_ORYSJ OSJNBa0002D18.12 Os03g0406900 OSNPB_030406900 ENOG411DR0Y MCM9 F4IFF3 MCM9_ARATH Probable DNA helicase MCM9 (EC 3.6.4.12) (Minichromosome maintenance 9) (AtMCM9) FUNCTION: Probable DNA helicase that may play a role in DNA repair during meiosis. {ECO:0000250}. 3.6.4.12 72463 Probable DNA helicase MCM9 (EC 3.6.4.12) (Minichromosome maintenance 9) (AtMCM9) nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; DNA repair [GO:0006281]; DNA replication initiation [GO:0006270]; meiotic cell cycle [GO:0051321] locus:2053448; AT2G14050 DNA replication licensing factor Probable DNA helicase MCM9 (EC 3.6.4.12) (Minichromosome maintenance 9) (OsMCM9) Q69QA6 MCM9_ORYSJ MCM9 Os06g0218500 LOC_Os06g11500 P0436F11.6 P0644A02.30 FUNCTION: Probable DNA helicase that may play a role in DNA repair during meiosis. {ECO:0000250}. ENOG411DR0S FAO1,FAO4A,FAO3,FAO4B Q9ZWB9,O65709,Q9LW56,Q94BP3,A0A1P8B6G2,A0A1I9LLZ5 FAO1_ARATH,FAO4A_ARATH,FAO3_ARATH,FAO4B_ARATH,A0A1P8B6G2_ARATH,A0A1I9LLZ5_ARATH Long-chain-alcohol oxidase FAO1 (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 1),Long-chain-alcohol oxidase FAO4A (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 4A),Long-chain-alcohol oxidase FAO3 (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 3),Long-chain-alcohol oxidase FAO4B (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 4B),Long-chain-alcohol oxidase (EC 1.1.3.20) FUNCTION: Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. {ECO:0000250}.,FUNCTION: Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. {ECO:0000269|PubMed:15358540, ECO:0000269|PubMed:18396913}.,FUNCTION: Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. {ECO:0000256|PIRNR:PIRNR028937}. ARA:AT1G03990-MONOMER;,ARA:AT4G19380-MONOMER;,ARA:AT3G23410-MONOMER;MetaCyc:AT3G23410-MONOMER;,ARA:GQT-559-MONOMER; 1.1.3.20 83864,80068,81389,81959,84846,74024 Long-chain-alcohol oxidase FAO1 (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 1),Long-chain-alcohol oxidase FAO4A (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 4A),Long-chain-alcohol oxidase FAO3 (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 3),Long-chain-alcohol oxidase FAO4B (EC 1.1.3.20) (Long-chain fatty alcohol oxidase 4B),Long-chain-alcohol oxidase (EC 1.1.3.20) integral component of membrane [GO:0016021]; intracellular [GO:0005622]; flavin adenine dinucleotide binding [GO:0050660]; long-chain-alcohol oxidase activity [GO:0046577]; oxidoreductase activity [GO:0016491],integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; flavin adenine dinucleotide binding [GO:0050660]; long-chain-alcohol oxidase activity [GO:0046577]; alcohol metabolic process [GO:0006066]; oxidation-reduction process [GO:0055114],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular [GO:0005622]; flavin adenine dinucleotide binding [GO:0050660]; long-chain-alcohol oxidase activity [GO:0046577]; oxidoreductase activity [GO:0016491],membrane [GO:0016020]; flavin adenine dinucleotide binding [GO:0050660]; long-chain-alcohol oxidase activity [GO:0046577],integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; long-chain-alcohol oxidase activity [GO:0046577] locus:2024157;,locus:2140401;,locus:2090900;,locus:2139895; AT1G03990,AT4G19380,AT3G23410,AT4G28570 Long-chain-alcohol oxidase Os08g0358900 protein,Long-chain-alcohol oxidase (EC 1.1.3.20) Q6YZK6,Q6K9N5 Q6YZK6_ORYSJ,Q6K9N5_ORYSJ P0488B06.34 Os08g0358900 OSNPB_080358900,Os02g0621800 Os02g0621800 OJ1234_B11.20 OSNPB_020621800 FUNCTION: Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. {ECO:0000256|PIRNR:PIRNR028937}. ENOG411DR0Q TK1B,TK1A F4KBF5,Q9S750 KITHB_ARATH,KITHA_ARATH Thymidine kinase b (AtTK1b) (EC 2.7.1.21),Thymidine kinase a (AtTK1a) (EC 2.7.1.21) DISRUPTION PHENOTYPE: No visible phenotype. The double mutant tk1a tk1b is seedling lethal. {ECO:0000269|PubMed:22897443}. FUNCTION: Part of the salvage pathway for purine and pyrimidine deoxyribonucleotide synthesis. Phosphorylates preferentially purines over pyrimidines. {ECO:0000269|PubMed:22897443}.,FUNCTION: Part of the salvage pathway for purine and pyrimidine deoxyribonucleotide synthesis. Phosphorylates preferentially purines over pyrimidines (PubMed:22897443). Mediates tolerance to genotoxins, such as ultraviolet-C (UV-C) irradiation, MMC, a DNA crosslinker, and ZEO, a DNA intercalator, that induce double-strand breaks and thus contributes to several DNA repair pathways by providing deoxythymidine triphosphate that serve as precursors for DNA repair and to balance deoxyribonucleotides pools (PubMed:25537647). {ECO:0000269|PubMed:22897443, ECO:0000269|PubMed:25537647}. PATHWAY: Purine metabolism. {ECO:0000269|PubMed:22897443}.; PATHWAY: Pyrimidine metabolism. {ECO:0000269|PubMed:22897443, ECO:0000269|PubMed:23351158}. ARA:AT3G07800-MONOMER;MetaCyc:AT3G07800-MONOMER; R-ATH-73614; 2.7.1.21; 2.7.1.21 31226,26079 Thymidine kinase b (AtTK1b) (EC 2.7.1.21),Thymidine kinase a (AtTK1a) (EC 2.7.1.21) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; thymidine kinase activity [GO:0004797]; DNA biosynthetic process [GO:0071897]; DNA metabolic process [GO:0006259]; response to cold [GO:0009409]; thymidine metabolic process [GO:0046104],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; thymidine kinase activity [GO:0004797]; DNA biosynthetic process [GO:0071897]; double-strand break repair [GO:0006302]; response to UV-C [GO:0010225]; thymidine metabolic process [GO:0046104] DEVELOPMENTAL STAGE: Strongly expressed at the early stages of germination upon testa rupture and throughout seedling development. Accumulates in the cotyledons and foliar primordia. In seedlings, highly present in almost every organ except the root meristem and secondary root primordia. In young leaves, detected in the trichomes. In mature leaves, present in the vasculature as well as in the pedicel and base. In flowers organs, mostly expressed in stigma, petals, anthers and pollen. In developing siliques, restricted to pedicels and septum. {ECO:0000269|PubMed:25537647}. TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:25537647}. locus:2178297;,locus:2077382; AT5G23070,AT3G07800 thymidine kinase Thymidine kinase (EC 2.7.1.21) O81263,Q10SR7,Q10SR8 KITH_ORYSJ,Q10SR7_ORYSJ,Q10SR8_ORYSJ TK Os03g0113100 LOC_Os03g02200 OSJNBa0090O10.3,Os03g0113100 LOC_Os03g02200 Os03g0113100 OSNPB_030113100,Os03g0113100 LOC_Os03g02200 OSNPB_030113100 ENOG411DR0V VPS2.3,VPS2.2 Q941D5,A0A1P8BHG8,A0A1P8BHG3 VPS2C_ARATH,A0A1P8BHG8_ARATH,A0A1P8BHG3_ARATH Vacuolar protein sorting-associated protein 2 homolog 3 (AtVPS2-3) (Charged multivesicular body protein 2 homolog 3) (ESCRT-III complex subunit VPS2 homolog 3),SNF7 family protein FUNCTION: Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo (By similarity). {ECO:0000250}. R-ATH-1632852;R-ATH-917729; 23026,20658,17293 Vacuolar protein sorting-associated protein 2 homolog 3 (AtVPS2-3) (Charged multivesicular body protein 2 homolog 3) (ESCRT-III complex subunit VPS2 homolog 3),SNF7 family protein ESCRT III complex [GO:0000815]; protein transport [GO:0015031]; vacuolar transport [GO:0007034],intracellular [GO:0005622]; vacuolar transport [GO:0007034] locus:2024107; AT1G03950 Vacuolar protein sorting-associated protein Os03g0639800 protein (SNF7 family protein) (SNF7 family protein, expressed) (cDNA clone:J033123F08, full insert sequence),Os10g0476400 protein (SNF7 family protein, expressed) (cDNA clone:001-027-B06, full insert sequence) Q6ASS4,Q9AUZ6 Q6ASS4_ORYSJ,Q9AUZ6_ORYSJ LOC_Os03g43860 Os03g0639800 B1394A07.17 OsJ_11853 OSNPB_030639800,Os10g0476400 LOC_Os10g33660 Os10g0476400 OsJ_31881 OSJNBa0026O12.13 OSJNBb0044B19.7 OSNPB_100476400 ENOG411DR0W AHK4,WOL Q9C5U0,A0A1P8B026 AHK4_ARATH,A0A1P8B026_ARATH Histidine kinase 4 (EC 2.7.13.3) (Arabidopsis histidine kinase 4) (AtHK4) (Cytokinin receptor CYTOKININ RESPONSE 1) (AtCRE1) (Cytokinin receptor CRE1) (Phosphoprotein phosphatase AHK4) (EC 3.1.3.16) (Protein AUTHENTIC HIS-KINASE 4) (Protein ROOT AS IN WOL 1) (Protein WOODEN LEG),CHASE domain containing histidine kinase protein DISRUPTION PHENOTYPE: Reduced sensitivity to cytokinin (mostly in shoots). Narrow vascular cylinder composed mainly of protoxylem cell files, with no apparent metaxylem or phloem. Hypersensitivity to ABA. Strong drought and salinity tolerance only in the presence of CK. Reduced cytokinin repression of several Pi starvation-responsive genes and increased sucrose sensitivity. More rapid germination, reduced requirement for light, and decreased far-red light sensitivity. Reduced sensitivity to N-isobutyl decanamide. Impaired benzyladenine (6-BA)-mediated repression of the iron uptake pathway. Impaired meristematic development in seedlings. {ECO:0000269|PubMed:11479382, ECO:0000269|PubMed:12410813, ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290, ECO:0000269|PubMed:15923327, ECO:0000269|PubMed:16357038, ECO:0000269|PubMed:16361392, ECO:0000269|PubMed:16753566, ECO:0000269|PubMed:17965178, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18397377, ECO:0000269|PubMed:20110319}. Wildtype roots.,Cytokinin-induced partial inhibition of cell division and greening of hypocotyl-derived calli.,Normal or slightly reduced sensitivity to cytokinin in shoot induction assay (exogenous application of cytokinins induces wildtype shoot formation).,Reduced sensitivity to cytokinin in root growth assay (exogenous application of cytokinins inhibits wildtype root elongation).,No visible phenotype.,Aborted vascular system containing few protoxylem cells in the primary root. Normal adventitious root-vascular system.,Adventitious roots are normal.,Does not produce lateral roots from the primary root. However 10 days after germination lateral roots are formed at the upper part of the hypocotyl rather than at the root-hypocotyl junction.,Dwarf phenotype.,Growth severely affected during reproductive growth phase: onset of flowering varies with each individual plant.,Leaf shape slightly altered: longitudinal length of blade more affected than lateral length. Impaired leaf vasculature.,Leaves expand more slowly than those of wildtype controls.,Normal vascular system in adventitious roots although the hypocotyl and primary root develop aborted vascular tissues.,Postembryonic growth of roots (primary and lateral) severely impaired.,Reduced seedling size with small cotyledons slightly shortened hypocotyls (65% of wildtype) and significantly reduced root length.,The leaves of the triple mutant expand more slowly than those of wildtype. At 17 days after germination their surface area is 20% that of wildtype plants.,The rate of leaf primordial formation is slightly decreased but the phyllotaxy is normal.,Almost completely infertile but can be allowed to self-fertilize under favorable temperature and light conditions.,Chlorophyll content about 35% of that of wild-type.,Delay in flowering induction.,Delay in rate of leaf formation. Longer plastochrone.,Downwards bending of cotyledons indicating differential growth in the adaxial and abaxial sides.,Early germination compared to wild-type.,Increase in trans-zeatin (16-fold) and trans-zeatin ribosides (9-fold) concentrations. 50-fold concentration increase for zeatin-O-glucoside.,Increased cytokinin resistance compared to double mutant ahk2-5 ahk3-7.,Increased seed size largely due to increased size of the embryo. Embryonic root epidermal cells increased 15% in number and 30% in size compared to wild-type.,Leaf epifermal cell size is increased about three-fold compared to wild-type cells in young as well as older leaves.,Shorter hypocotyls than wild-type when grown in white light but increase in length when grown in darkness (~25%) and red- and far-red-light.,Stronger reduction of shoot development compared to double mutant ahk2-5 ahk3-7.,Total loss of cytokinin-dependent chlorophyll retention in leaves (under dark conditions causing the so-called dark-induced senescence).,Displays secondary lateral root branching (not seen in wild-type).,With a few exceptions no increase in zeatin concentrations.,Resistant to cytokinin-induced hypocotyl shortening.,Two- to three-fold increase of concentrations of all zeatin metabolites.,Addition of IAA to the medium completely inhibits root elongation indicating normal auxin responsiveness.,No significant phenotype in shoot organs.,Root elongation not severely inhibited by cytokinins.,Cytokinin insensitive (no inhibition of growth compared to wildtype).,Occasionally produces inflorescence stems with abnormal and non-functional flowers which did not produce seeds.,Shoot and root growth is very slow and leaf number is decreased compared to wildtype.,No defect in root vasculature morphology.,Normal vascular morphology.,Reduced cytokinin-induced inhibition of adventitious root formation compared to wildtype.,No significant response in the cytokinin-induced assay for stimulation of cell division and greening of hypocotyl-derived calli.,Prolonged plastochron.,Shorter root than wildtype plant.,The diameter of the shoot apical meristem is about three times smaller than that of wildtype.,The size and activity of the root apical meristem is decreased with respect to wildtype.,Enhancement of the inhibition of cytokinin-induced stimulation of cell division and greening of hypocotyl-derived calli compared to the responsed observed with CRE1 single mutants (e.g. cre1-10).,No cytokinin-induced inhibition of adventitious root formation.,No difference in chlorophyll content compared to wild-type.,No loss of cytokinin-dependent chlorophyll retention in leaves (under dark conditions causing the so-called dark-induced senescence).,Resistant to cytokinin in root elongation assay and in callus growth and shoot formation assays.,Shoot development indistinguishable from that of wild-type.,Develops metaxylem as wildtype plants.,Excised hypocotyls develop small and yellowish calli indicating a strong insensitivity to kinetin while wildtype calli are green-coloured.,In the presence of kinetin lateral root formation is not greatly inhibited even at high concentrations.,Root elongation is indistinguisable from that of wildtype.,Strong cytokinin insensitivity.,Phenotype not described.,Small SAM and limited root growth.,Absence of periclinal cell divisions in the primary root meristem.,Cytokinin insensitivity.,Decreased number of vascular initials.,Defect in cell division in the root and lower hypocotyl region soon after the embryo torpedo stage.,No metaxylem and no phloem differentiation.,Reduced cell number and exclusive xylem differentiation within the root vasculature.,Root elongation markedly reduced in the presence of kinetin.,In this line the wol-1 allele appears recessive compared to cre1-3.,Same phenotype as wol-1.,Root cross-sections are identical to those of wildtype: observed re-appearance of a bipolar xylem strand and phloem tissue on each side.,Rapidly accumulate anthocyanins due to the loss of root functionality.,Short root phenotype.,Strong insensitivity to the hormone kinetin.,Viability depends on the ability to develop adventitious root before plant dies.,Addition of IAA results in the formation of laterals from the primary root as is the case for wildtype. Both the laterals and primary root show retarded growth and reduced amounts of vascular tissue. Similar phenotypes were obtained with NAA instead of IAA.,Reduction in primary root length (about 5-fold compared to wildtype).,The hypocotyl vascular system only contains xylem cells. Secondary vascular tissue develops in the upper part of the hypocotyl.,Strong suppression of wol-1 mutant phenotype. Phenotype close to that of wild-type.,Weak suppression of wol-1 mutant phenotype. Phenotype intermediate between that of wol-1 and wild-type. Short roots; Insensitive to cytokinin-T. Kakimoto-2001 FUNCTION: Cytokinins (CK) receptor related to bacterial two-component regulators. Binds also the synthetic urea-type cytokinin thiadiazuron, a potent defoliant and herbicide. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feeds phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. In the absence of cytokinin, removes phosphate from HPt proteins, decreasing the system phosphoload. Involved in meristems establishment in seedlings. Acts as a redundant negative regulator of drought and salt stress responses, and abscisic acid (ABA) signaling in a cytokinin-dependent manner. Required to set vascular asymmetric cell divisions that establish phloem and procambium cell lines. Redundant positive regulator of cytokinin signaling that regulates many developmental processes including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Can interact with isoprenoid-type cytokinins trans-zeatin (tZ and tZR), isopentenyladenine (iP), and isopentenyladenosine (iPR), the meta hydroxylated derivative of benzyladenine m-topolin, buta-2,3-dienyladenine (HA-8), penta-2,3-dienyladenine (HA-1), 4-methyl-penta-2,3-dienyladenine (HA-10), 4-hydroxy-2-butynyladenine (RM1), 2-butynyladenine (RM6), and to a lower extent, with cis-zeatin (cZ), zeatin riboside and dihydrozeatin (DZ). Together with AHK3, involved in the cytokinin-dependent responses to Pi starvation and sucrose stresses. Required for the formation of auxin-transporting vascular tissues in the hypocotyl, and primary and lateral roots, but not in adventitious roots, thus leading to auxin basipetal transport that regulates root development and branching. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Prevents the uptake of sulfate by mediating cytokinin-dependent down-regulation of high-affinity sulfate transporters (e.g. SULTR1;1 and SULTR1;2) expression in roots. Together with AHK2, required for growth and reproduction promotion stimulated by the endophytic fungus Piriformospora indica in a trans-zeatin-dependent manner. Required to trigger the phytotoxic effect of the snapdragon (Antirrhinum majus) flowers volatile organic compound (VOC) methyl benzoate (MB). Plays a role in the cytokinin-mediated repression of the iron uptake pathway. {ECO:0000269|PubMed:11114883, ECO:0000269|PubMed:11230563, ECO:0000269|PubMed:11234017, ECO:0000269|PubMed:11479382, ECO:0000269|PubMed:11577198, ECO:0000269|PubMed:12354925, ECO:0000269|PubMed:12410813, ECO:0000269|PubMed:15053761, ECO:0000269|PubMed:15144379, ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290, ECO:0000269|PubMed:15509853, ECO:0000269|PubMed:15728338, ECO:0000269|PubMed:15923327, ECO:0000269|PubMed:16246292, ECO:0000269|PubMed:16357038, ECO:0000269|PubMed:16361392, ECO:0000269|PubMed:16753566, ECO:0000269|PubMed:17075078, ECO:0000269|PubMed:17216481, ECO:0000269|PubMed:17956858, ECO:0000269|PubMed:17965178, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18397377, ECO:0000269|PubMed:18571199, ECO:0000269|PubMed:18785832, ECO:0000269|PubMed:19032596, ECO:0000269|PubMed:20110319}. 2.7.13.3; 3.1.3.16 120731,119288 Histidine kinase 4 (EC 2.7.13.3) (Arabidopsis histidine kinase 4) (AtHK4) (Cytokinin receptor CYTOKININ RESPONSE 1) (AtCRE1) (Cytokinin receptor CRE1) (Phosphoprotein phosphatase AHK4) (EC 3.1.3.16) (Protein AUTHENTIC HIS-KINASE 4) (Protein ROOT AS IN WOL 1) (Protein WOODEN LEG),CHASE domain containing histidine kinase protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cytokine binding [GO:0019955]; cytokinin receptor activity [GO:0009884]; enzyme binding [GO:0019899]; phosphoprotein phosphatase activity [GO:0004721]; phosphorelay sensor kinase activity [GO:0000155]; protein histidine kinase activity [GO:0004673]; protein histidine kinase binding [GO:0043424]; protein kinase binding [GO:0019901]; transmembrane histidine kinase cytokinin receptor activity [GO:0009885]; carbohydrate homeostasis [GO:0033500]; cellular response to phosphate starvation [GO:0016036]; cellular response to sucrose stimulus [GO:0071329]; cytokinin-activated signaling pathway [GO:0009736]; defense response to bacterium [GO:0042742]; embryonic root morphogenesis [GO:0010086]; nucleoside metabolic process [GO:0009116]; osmosensory signaling pathway [GO:0007231]; phosphorelay signal transduction system [GO:0000160]; protein phosphorylation [GO:0006468]; regulation of meristem development [GO:0048509]; regulation of seed germination [GO:0010029]; regulation of shoot system development [GO:0048831]; response to water deprivation [GO:0009414]; sulfate transport [GO:0008272],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; phosphorelay sensor kinase activity [GO:0000155]; nucleoside metabolic process [GO:0009116] DEVELOPMENTAL STAGE: Expressed specifically in the vasculature since the early stages of embryogenesis. At the globular stage of embryogenesis, detected in the four innermost cells, which are the precursors of the vascular tissue. During the heart, torpedo, and nearly mature stages, expressed in the procambium of the cotyledon shoulders, prospective hypocotyl, and embryonic root. In seedlings, mainly localized in meristematic tissues (e.g. shoot apical meristem SAM, root tips, and growing leaf and lateral root primordia), especially in vasculature. Present in all the vasculature and the shoot apical meristem (SAM) of the adult plant. In flowers, localized in carpels and developing ovules. In the root tips, expressed in the central cylinder. {ECO:0000269|PubMed:11114883, ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:16753566}. TISSUE SPECIFICITY: Mostly expressed in roots, specifically in the vascular cylinder and pericycle, and, to a lower extent, in leaves and flowers. Present in seedlings. {ECO:0000269|PubMed:11114883, ECO:0000269|PubMed:11230578, ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290}. locus:2059718; AT2G01830 Histidine kinase Probable histidine kinase 4 (OsHK4) (EC 2.7.13.3) (OsCRL1b),Probable histidine kinase 6 (OsHK6) (EC 2.7.13.3) (OsCRL1a),Histidine kinase 1-like protein (Os07g0576700 protein),Os03g0717700 protein (Fragment),Os02g0738400 protein A1A698,A1A699,Q6ZLA1,A0A0N7KHY2,A0A0N7KG24 OHK4_ORYSJ,OHK6_ORYSJ,Q6ZLA1_ORYSJ,A0A0N7KHY2_ORYSJ,A0A0N7KG24_ORYSJ HK4 OHK4 Os03g0717700 LOC_Os03g50860 OsJ_12359,HK6 OHK5 Os02g0738400 LOC_Os02g50480 P0684F11.6,Os07g0576700 OJ1065_B06.11 OsJ_24858 OSNPB_070576700,Os03g0717700 OSNPB_030717700,Os02g0738400 OSNPB_020738400 DISRUPTION PHENOTYPE: Semi-dwarf, chlorina, late heading and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Cytokinin receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. {ECO:0000269|PubMed:22642989}. ENOG411DR0U Q9FMU2 PP380_ARATH Pentatricopeptide repeat-containing protein At5g14080 71364 Pentatricopeptide repeat-containing protein At5g14080 chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2174633; AT5G14080 Pentatricopeptide repeat-containing protein Os03g0782900 protein (Fragment) Q0DN08 Q0DN08_ORYSJ Os03g0782900 Os03g0782900 OSNPB_030782900 ENOG411DR0J BON3,BON2,BON1 Q5XQC7,Q5S1W2,Q941L3,Q8VZG6,F4K521,A0A1P8BB74,F4K518 BON3_ARATH,BON2_ARATH,BON1_ARATH,Q8VZG6_ARATH,F4K521_ARATH,A0A1P8BB74_ARATH,F4K518_ARATH Protein BONZAI 3,Protein BONZAI 2,Protein BONZAI 1 (COPINE 1),AT5g61910/k22g18_30 (DCD (Development and Cell Death) domain protein) (Uncharacterized protein At5g61910),DCD (Development and Cell Death) domain protein DISRUPTION PHENOTYPE: No visible phenotype; due to partial redundancy with BON1 and BON2. Bon2 and bon3 double mutant has no visible phenotype. bon1 and bon3 double mutant is seedling-lethal when grown at 22 degrees Celsius. Bon1, bon2 and bon3 triple mutant is seedling-lethal at any temperature. {ECO:0000269|PubMed:16367962}.,DISRUPTION PHENOTYPE: No visible phenotype; due to partial redundancy with BON1 and BON3. Bon2 and bon3 double mutant has no visible phenotype. Bon1 and bon2 double mutant is seedling-lethal when grown at 22 degrees Celsius. Bon1, bon2 and bon3 triple mutant is seedling-lethal at any temperature. {ECO:0000269|PubMed:16367962}.,DISRUPTION PHENOTYPE: Dwarf, twisted leaves and enhanced disease resistance in cv. Columbia when grown at 22 degrees Celsius. No visible phenotype when grown at 28 degrees Celsius, or in cv. Landsberg erecta, cv. No-0, and cv. Wassilewskija at any temperature. Humidity and temperature sensitive lesion mimic phenotype, accelerated hypersensitive response (HR) and increased disease resistance. Bon1 and bon2 double mutants, as well as bon1 and bon3 double mutants are seedling-lethal when grown at 22 degrees Celsius. bon1, bon2 and bon3 triple mutant is seedling-lethal at any temperature. {ECO:0000269|PubMed:11544183, ECO:0000269|PubMed:11595798, ECO:0000269|PubMed:12857819, ECO:0000269|PubMed:15031411, ECO:0000269|PubMed:16367962}. Seedling lethal at 22 and 28C.,Seedling lethal at 22C. Viable at 28C.,No effect of mutant allele on growth development or defense responses.,Abnormal pin-shaped (narrow) leaves chlorosis seedling lethal at 22C. Small, curled leaves; Dwarf at low temperature; Resistant to disease-G. Fink-2001 FUNCTION: Negative regulator of cell death and defense responses. Repress a number of R genes and may have effects in promoting growth and development. May function in membrane trafficking and in fusion of vesicles with plasma membrane (By similarity). {ECO:0000250, ECO:0000269|PubMed:16367962, ECO:0000269|PubMed:19522566}.,FUNCTION: Negative regulator of cell death and defense responses. May repress a number of R genes and may have effects in promoting growth and development. May function in membrane trafficking and in fusion of vesicles with plasma membrane (By similarity). {ECO:0000250, ECO:0000269|PubMed:16367962}.,FUNCTION: Negative regulator of cell death and defense responses. Negative regulator of several R genes, including SNC1. May have effects in promoting growth and development. May function in membrane trafficking and in fusion of vesicles with plasma membrane at low temperature. Exhibits calcium-dependent phospholipid binding properties. {ECO:0000269|PubMed:15031411, ECO:0000269|PubMed:16367962, ECO:0000269|PubMed:18855102, ECO:0000269|PubMed:19522566, ECO:0000269|PubMed:20634289}. MISCELLANEOUS: Overexpression of BON1 has no effects on pathogen resistance. 64202,64033,63120,80520,80922,76989,147170 Protein BONZAI 3,Protein BONZAI 2,Protein BONZAI 1 (COPINE 1),AT5g61910/k22g18_30 (DCD (Development and Cell Death) domain protein) (Uncharacterized protein At5g61910),DCD (Development and Cell Death) domain protein plasma membrane [GO:0005886]; calcium-dependent phospholipid binding [GO:0005544]; defense response [GO:0006952]; negative regulation of cell death [GO:0060548]; stomatal closure [GO:0090332],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calcium-dependent phospholipid binding [GO:0005544]; defense response [GO:0006952]; negative regulation of cell death [GO:0060548],plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calcium-dependent phospholipid binding [GO:0005544]; defense response [GO:0006952]; negative regulation of cell death [GO:0060548]; positive regulation of cell size [GO:0045793]; response to humidity [GO:0009270]; response to temperature stimulus [GO:0009266] TISSUE SPECIFICITY: Expressed at an extremely low level. {ECO:0000269|PubMed:16367962}.,TISSUE SPECIFICITY: Expressed in roots, leaves and stems. Expressed in young growing tissues. {ECO:0000269|PubMed:16367962}.,TISSUE SPECIFICITY: Expressed in roots and flowers and, at higher levels, in leaves and stems. Strongly expressed in growing tissues. Not detected in green siliques. {ECO:0000269|PubMed:11544183, ECO:0000269|PubMed:16367962, ECO:0000269|PubMed:18855102}. locus:2036074;,locus:2183299;,locus:2156186;,locus:2156141; AT1G08860,AT5G07300,AT5G61900,AT5G61910 may have effects in promoting growth and development. May function in membrane trafficking and in fusion of vesicles with plasma membrane Os02g0521300 protein (Putative copine III) (cDNA clone:J023023M23, full insert sequence),Os05g0373300 protein Q6H563,A0A0P0WLH0 Q6H563_ORYSJ,A0A0P0WLH0_ORYSJ Os02g0521300 Os02g0521300 OSJNBa0047A17.6 OSNPB_020521300,Os05g0373300 OSNPB_050373300 ENOG411DR0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os07g0239600 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q7XHP5 Q7XHP5_ORYSJ P0565A07.138 P0523A04.110 Os07g0239600 OSNPB_070239600 ENOG411DR0H CNGC15 Q9SL29,A0A1P8B1B6 CNG15_ARATH,A0A1P8B1B6_ARATH Putative cyclic nucleotide-gated ion channel 15 (Cyclic nucleotide- and calmodulin-regulated ion channel 15),Cyclic nucleotide-gated channel 15 FUNCTION: Putative cyclic nucleotide-gated ion channel. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 78723,74289 Putative cyclic nucleotide-gated ion channel 15 (Cyclic nucleotide- and calmodulin-regulated ion channel 15),Cyclic nucleotide-gated channel 15 integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; voltage-gated potassium channel activity [GO:0005249] locus:2062814; AT2G28260 cyclic nucleotide-gated ion channel Os02g0627700 protein A0A0P0VM15 A0A0P0VM15_ORYSJ Os02g0627700 OSNPB_020627700 ENOG411DR0I Q8L7S5,A0A1P8B633 Q8L7S5_ARATH,A0A1P8B633_ARATH AT4g18560/F28J12_220 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein 71613,66713 AT4g18560/F28J12_220 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast outer membrane [GO:0009707]; chloroplast organization [GO:0009658] locus:2831359; AT4G18570 NA Os01g0652000 protein,Os01g0651932 protein Q0JKS9,A0A0P0V5Z5 Q0JKS9_ORYSJ,A0A0P0V5Z5_ORYSJ Os01g0652000 Os01g0652000 OSNPB_010652000,Os01g0651932 OSNPB_010651932 ENOG411DR0N Q9ASV2 Q9ASV2_ARATH At1g06730/F4H5_22 (PfkB-like carbohydrate kinase family protein) 52763 At1g06730/F4H5_22 (PfkB-like carbohydrate kinase family protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; carbohydrate kinase activity [GO:0019200]; carbohydrate phosphorylation [GO:0046835] locus:2033138; AT1G06730 PfkB-type carbohydrate kinase family protein Os03g0164700 protein (PfkB-type carbohydrate kinase family protein, putative, expressed) (Putative sugar kinase) Q8S5U3 Q8S5U3_ORYSJ Os03g0164700 LOC_Os03g06880 Os03g0164700 OJ1123F12.7 OSNPB_030164700 ENOG411DR0M CTR1,SIS8 Q05609,Q9C9U5,Q8S9K4,A0A1P8AP88,F4IAN2 CTR1_ARATH,SIS8_ARATH,Q8S9K4_ARATH,A0A1P8AP88_ARATH,F4IAN2_ARATH Serine/threonine-protein kinase CTR1 (EC 2.7.11.1) (Protein CONSTITUTIVE TRIPLE RESPONSE1),Probable serine/threonine-protein kinase SIS8 (EC 2.7.11.1) (MAPKK kinase SIS8) (Protein SUGAR INSENSITIVE 8),AT5g11850/F14F18_20 (Protein kinase superfamily protein),Protein kinase superfamily protein DISRUPTION PHENOTYPE: Mutants display ethylene-treated phenotypes, resulting in plants with small, unexpanded leaves and whose seed cotyledon growth is impaired. {ECO:0000269|PubMed:8431946}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased tolerance to salt stress during germination (PubMed:18299802). No visible phenotype under normal growth conditions, but mutant plants display a sugar-resistant seedling development phenotype (PubMed:24320620). {ECO:0000269|PubMed:18299802, ECO:0000269|PubMed:24320620}. GA abolished the effect of the mutation on flowering time in SDs.,Late flowering in long-day photoperiods.,Mutation had dramatic effects on the morphology of adult plants. The rosette leaves of mutant plants were much smaller than wild-type leaves. The mutants bolted - l-2 weeks later the early flowers were infertile the root system was much less extensive and the inflorescence was much smaller than those of the wild type. The gynoecium of the mutant elongated significantly earlier relative to the rest of the developing flower often protruding out of the unopened buds.,Plants were still in the vegetative growth phase after 2 months growth in short day (SD) photoperiod (although WT plants had already flowered). Eventually a few ctr1–1 plants did flower after 2 months in SDs.,The levels of the biologically active gibberellins GA4 and GA1 were significantly reduced in long day photoperiod-grown mutant plants.,The mutant is more tolerant to salt (NaCl) and osmotic (mannitol) stress than the wild type during germination and post-germination development especially at high levels of the stresses.,Reduced number of lateral roots.,In LD-grown double mutant plants bolted at a similar time to WT controls. In SDs they bolted 10 days later than WT plants but much earlier than ctr1-1 single-mutant plants.,Slightly more infertile than the other ctr1 alleles.,Extreme hypocotyl shortening when grown in the dark. Much smaller than either of the single mutants. Plants die at or near the time at which they flower.,Increased tolerance of salt stress. Seedlings germinate in the presence of high concentrations of NaCl. Short hypocotyl and roots; Exaggerated apical hook; Slow growth; Dark green cotyledons; Dwarf; Small rosette; Sterile early flowers; Late flowering-J. Ecker-1993,Resistant to salt-C. Xiang-2007 FUNCTION: Acts as a negative regulator in the ethylene response pathway (PubMed:8431946). Phosphorylates the cytosolic C-terminal domain of EIN2, preventing the signaling in the absence of ethylene (PubMed:23132950). {ECO:0000269|PubMed:23132950, ECO:0000269|PubMed:8431946}.,FUNCTION: Acts as negative regulator of salt tolerance (PubMed:18299802). Mediates sugar response during early seedling development (PubMed:24320620). {ECO:0000269|PubMed:18299802, ECO:0000269|PubMed:24320620}. R-ATH-430116;R-ATH-442742;R-ATH-5673000;R-ATH-5674135;R-ATH-5674499;R-ATH-5675221; 2.7.11.1; 2.7.11.1 90306,112206,97882,103709,108160 Serine/threonine-protein kinase CTR1 (EC 2.7.11.1) (Protein CONSTITUTIVE TRIPLE RESPONSE1),Probable serine/threonine-protein kinase SIS8 (EC 2.7.11.1) (MAPKK kinase SIS8) (Protein SUGAR INSENSITIVE 8),AT5g11850/F14F18_20 (Protein kinase superfamily protein),Protein kinase superfamily protein endoplasmic reticulum membrane [GO:0005789]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; cellular response to iron ion [GO:0071281]; ethylene-activated signaling pathway [GO:0009873]; gibberellin biosynthetic process [GO:0009686]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; protein autophosphorylation [GO:0046777]; regulation of post-embryonic root development [GO:2000069]; regulation of stem cell division [GO:2000035]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; response to ethylene [GO:0009723]; response to fructose [GO:0009750]; response to hypoxia [GO:0001666]; response to sucrose [GO:0009744]; sugar mediated signaling pathway [GO:0010182],nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to salt stress [GO:0009651]; sugar mediated signaling pathway [GO:0010182],intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in both seedlings and adult plants. {ECO:0000269|PubMed:8431946}.,TISSUE SPECIFICITY: Expressed roots, rosette and cauline leaves, and at lower levels in flowers and siliques. {ECO:0000269|PubMed:18299802}. locus:2144613;,locus:2027794;,locus:2143009;,locus:2194055; AT5G03730,AT1G73660,AT5G11850,AT1G18160 Serine threonine-protein kinase Os02g0743500 protein (Putative MAP kinase kinase kinase),Os06g0232100 protein,(Rice Genome Annotation Project) MAP3K delta-1 protein kinase (Os02g0220700 protein),Os06g0232100 protein (Fragment),Os09g0566550 protein,Os02g0527600 protein Q6Z2V3,Q6Z2V2,Q0DDD4,B7FA58,A0A0P0WUG9,A0A0P0XQM6,A0A0N7KLT6,A0A0P0VJX9,A0A0P0WUY1 Q6Z2V3_ORYSJ,Q6Z2V2_ORYSJ,Q0DDD4_ORYSJ,B7FA58_ORYSJ,A0A0P0WUG9_ORYSJ,A0A0P0XQM6_ORYSJ,A0A0N7KLT6_ORYSJ,A0A0P0VJX9_ORYSJ,A0A0P0WUY1_ORYSJ OJ1734_E02.18-2 Os02g0743500 OSNPB_020743500,OJ1734_E02.18-1 Os02g0743500 OsJ_08351 OSNPB_020743500,Os06g0232100 Os06g0232100 OSNPB_060232100,Os02g0220700 OSNPB_020220700,Os06g0232100 OSNPB_060232100,Os09g0566550 OSNPB_090566550,Os02g0527600 OSNPB_020527600 ENOG411DR0C BHLH61 Q9LXA9 BH061_ARATH Transcription factor bHLH61 (Basic helix-loop-helix protein 61) (AtbHLH61) (bHLH 61) (Transcription factor EN 46) (bHLH transcription factor bHLH061) 35554 Transcription factor bHLH61 (Basic helix-loop-helix protein 61) (AtbHLH61) (bHLH 61) (Transcription factor EN 46) (bHLH transcription factor bHLH061) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in leaves and flowers. {ECO:0000269|PubMed:12679534}. locus:2142419; AT5G10570 Transcription factor Basic helix-loop-helix, putative, expressed (Os03g0135700 protein) (cDNA clone:006-303-F08, full insert sequence),Helix-loop-helix DNA-binding domain containing protein, expressed (Os10g0544200 protein) (cDNA clone:001-119-D04, full insert sequence) Q10S44,Q336V8 Q10S44_ORYSJ,Q336V8_ORYSJ Os03g0135700 LOC_Os03g04310 OsJ_09317 OSNPB_030135700,Os10g0544200 LOC_Os10g39750 Os10g0544200 OsJ_32337 OSNPB_100544200 ENOG411DR0A MAP65-2,MAP65-1 Q8LEG3,Q9FLP0,F4K3E4 MA652_ARATH,MA651_ARATH,F4K3E4_ARATH 65-kDa microtubule-associated protein 2 (AtMAP65-2),65-kDa microtubule-associated protein 1 (AtMAP65-1),Microtubule-associated proteins 65-1 FUNCTION: Microtubule-associated protein that stabilize microtubules (MT). Involved in the regulation of MT organization and dynamics. Confers MT resistance to the drug propyzamide and cold conditions. {ECO:0000269|PubMed:19002591}.,FUNCTION: Microtubule-associated protein that bundle and stabilize adjacent microtubules (MT) of the cell cortex. Enhances MT nucleation. Can also bind to tubulin dimers and promotes their polymerization. Confers MT resistance to the drug propyzamide and cold conditions. Plays a role in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. Represses metaphase spindle organization and the transition to anaphase in dephosphorylated active form. Promotes the formation of a planar network of antiparallel microtubules. May be involved in stomatal movement modulation by regulating the dynamic and arrangement of cortical MT. {ECO:0000269|PubMed:15557096, ECO:0000269|PubMed:15908607, ECO:0000269|PubMed:16014384, ECO:0000269|PubMed:16098102, ECO:0000269|PubMed:16847052, ECO:0000269|PubMed:17394772, ECO:0000269|PubMed:18667529, ECO:0000269|PubMed:20215588}. 65205,65785,69089 65-kDa microtubule-associated protein 2 (AtMAP65-2),65-kDa microtubule-associated protein 1 (AtMAP65-1),Microtubule-associated proteins 65-1 cortical microtubule [GO:0055028]; microtubule [GO:0005874]; mitotic spindle [GO:0072686]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; preprophase band [GO:0009574]; spindle [GO:0005819]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cell proliferation [GO:0008283]; cytokinesis by cell plate formation [GO:0000911]; microtubule cytoskeleton organization [GO:0000226]; post-embryonic root development [GO:0048528],cell cortex [GO:0005938]; microtubule [GO:0005874]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; microtubule binding [GO:0008017]; protein dimerization activity [GO:0046983]; cortical microtubule organization [GO:0043622]; cytokinesis [GO:0000910],cortical microtubule [GO:0055028]; cortical microtubule, transverse to long axis [GO:0010005]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; microtubule [GO:0005874]; mitotic spindle [GO:0072686]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; preprophase band [GO:0009574]; spindle [GO:0005819]; microtubule binding [GO:0008017]; cell proliferation [GO:0008283]; cytokinesis by cell plate formation [GO:0000911]; microtubule bundle formation [GO:0001578]; microtubule nucleation [GO:0007020]; microtubule polymerization [GO:0046785]; positive regulation of microtubule polymerization [GO:0031116]; post-embryonic root development [GO:0048528] TISSUE SPECIFICITY: Expressed in all organs and tissues with the exception of sepals and anthers. Bound to subsets of microtubules in the cells of root epidermis, hypocotyl and cotyledons (at protein level). {ECO:0000269|PubMed:15273298}. locus:2116267;,locus:2161650; AT4G26760,AT5G55230 Microtubule-associated protein Os06g0308300 protein (Putative microtubule-associated protein) (cDNA clone:J033048O08, full insert sequence),Os06g0611000 protein (Putative microtubule-associated protein MAP65-1a) (cDNA clone:J013095H11, full insert sequence),Os06g0611000 protein (Fragment),Os06g0308300 protein (Fragment) Q5Z4M1,Q69XG1,A0A0P0WZ17,A0A0P0WVP5 Q5Z4M1_ORYSJ,Q69XG1_ORYSJ,A0A0P0WZ17_ORYSJ,A0A0P0WVP5_ORYSJ P0417E03.30-1 P0414E10.4-1 Os06g0308300 OSNPB_060308300,Os06g0611000 Os06g0611000 OsJ_21950 OSNPB_060611000 P0490F09.32,Os06g0611000 OSNPB_060611000,Os06g0308300 OSNPB_060308300 ENOG411DR0G DTX45 Q9SVE7,A0A1P8B921,A0A1P8B923,A0A1P8B902 DTX45_ARATH,A0A1P8B921_ARATH,A0A1P8B923_ARATH,A0A1P8B902_ARATH Protein DETOXIFICATION 45, chloroplastic (AtDTX45) (Multidrug and toxic compound extrusion protein 45) (MATE protein 45),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) DISRUPTION PHENOTYPE: No reduction in aluminum tolerance. {ECO:0000269|PubMed:18826429}. 59817,51927,47866,58730 Protein DETOXIFICATION 45, chloroplastic (AtDTX45) (Multidrug and toxic compound extrusion protein 45) (MATE protein 45),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18826429}. locus:2121783; AT4G38380 MATE efflux family protein 3 chloroplastic-like Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),Os02g0833100 protein A0A0P0XQP1,A0A0P0VRW6 A0A0P0XQP1_ORYSJ,A0A0P0VRW6_ORYSJ Os09g0548300 OSNPB_090548300,Os02g0833100 OSNPB_020833100 ENOG411DR0D Q9T0G1 Q9T0G1_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g10030) (Uncharacterized protein T5L19.160) 42148 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein AT4g10030) (Uncharacterized protein T5L19.160) phospholipase activity [GO:0004620]; lipid biosynthetic process [GO:0008610]; response to cold [GO:0009409] locus:2140563; AT4G10030 hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411DR0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sucrose-phosphatase NA NA NA NA NA NA NA ENOG411DXSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0215500 protein (Putative esterase) (cDNA clone:001-025-H05, full insert sequence) (cDNA clone:J033092C19, full insert sequence) Q5QNJ7 Q5QNJ7_ORYSJ Os01g0215500 OSJNBa0038J17.43 OSNPB_010215500 P0515G01.21 ENOG411DXSJ XK-2 Q949W8,F4K670 Q949W8_ARATH,F4K670_ARATH Putative xylulose kinase (Xylulose kinase-2),Xylulose kinase-2 FUNCTION: Mediates 1-deoxy-D-xylulose (DX) phosphorylation in the cytoplasm prior to the translocation of 1-deoxy-D-xylulose 5-phosphate into plastids. Can also phosphorylates D-xylulose (Xyl). Uses preferentially ATP as cosubstrate. {ECO:0000269|PubMed:16920870}. ARA:AT5G49650-MONOMER; R-ATH-5661270; 61295,46964 Putative xylulose kinase (Xylulose kinase-2),Xylulose kinase-2 cytosol [GO:0005829]; xylulokinase activity [GO:0004856]; xylulose metabolic process [GO:0005997],kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; carbohydrate metabolic process [GO:0005975] locus:2168902; AT5G49650 xylulose Os07g0640200 protein (Putative xylulose kinase) (cDNA clone:J023045I10, full insert sequence) Q8GRU7 Q8GRU7_ORYSJ P0524G08.102 OJ1340_C08.135 Os07g0640200 OsJ_25306 OSNPB_070640200 ENOG411DXSC MTG13.5 Q8RY21,A0A1P8BD80,F4KE50 Q8RY21_ARATH,A0A1P8BD80_ARATH,F4KE50_ARATH AT5g16610/MTG13_5,Uncharacterized protein 60071,60029,76210 AT5g16610/MTG13_5,Uncharacterized protein locus:2174150; AT5G16610 NA Os03g0221300 protein (Fragment) Q0DTW2 Q0DTW2_ORYSJ Os03g0221300 OSNPB_030221300 ENOG411DXSU GA2 Q9SAK2 KSB_ARATH Ent-kaur-16-ene synthase, chloroplastic (EC 4.2.3.19) (Ent-kaurene synthase) (AtKS) (Ent-kaurene synthase B) (KSB) (Protein GA REQUIRING 2) Very low germination rate; Severe dwarf; Dark green; Sterile-Y. Kamiya-1998 FUNCTION: Catalyzes the conversion of ent-copalyl diphosphate to the gibberellin precursor ent-kaur-16-ene. {ECO:0000269|PubMed:17456599}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT1G79460-MONOMER;MetaCyc:AT1G79460-MONOMER; 4.2.3.19; 4.2.3.19 89622 Ent-kaur-16-ene synthase, chloroplastic (EC 4.2.3.19) (Ent-kaurene synthase) (AtKS) (Ent-kaurene synthase B) (KSB) (Protein GA REQUIRING 2) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ent-kaurene synthase activity [GO:0009899]; magnesium ion binding [GO:0000287]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:12566586}. locus:2206390; AT1G79460 synthase Syn-pimara-7,15-diene synthase (EC 4.2.3.35) (9-beta-pimara-7,15-diene synthase) (Ent-kaurene synthase-like 4) (OsKS4) (OsKSL4) (OsDTS2),Ent-cassa-12,15-diene synthase (EC 4.2.3.28) (Diterpene cyclase 1) (OsDTC1) (Ent-kaurene synthase-like 7) (OsKSL7) (OsKS3),Ent-kaur-16-ene synthase, chloroplastic (EC 4.2.3.19) (Ent-kaurene synthase B) (Kaurene synthase 1) (OsKS1),Ent-kaurene synthase-like 2 (OsKSL2) (EC 4.2.3.-),Ent-kaurene synthase-like 3 (OsKS3) (OsKSL3) (EC 4.2.3.-) (Ent-kaurene synthase-like 2) (OsKS2),Os04g0612000 protein (Fragment),Os02g0572050 protein (Fragment),Os11g0474900 protein Q0JEZ8,Q0E088,Q0JA82,Q0JA81,Q0JA83,A0A0P0WEP9,A0A0P0VKJ7,A0A0P0Y2B2 KSL4_ORYSJ,KSL7_ORYSJ,KS1_ORYSJ,KSL2_ORYSJ,KSL3_ORYSJ,A0A0P0WEP9_ORYSJ,A0A0P0VKJ7_ORYSJ,A0A0P0Y2B2_ORYSJ KSL4 DTS2 Os04g0179700 LOC_Os04g10060 OsJ_013413 OSJNBa0052P16.14,KSL7 DTC1 Os02g0570400 LOC_Os02g36140 OsJ_006992 OSJNBa0008E01.23,KS1 KS1A Os04g0611800 LOC_Os04g52230 OSJNBa0070C17.8,KSL2 Os04g0612000 LOC_Os04g52240 OSJNBa0070C17.9,KSL3 KS2 Os04g0611700 LOC_Os04g52210 OSJNBa0070C17.6,Os04g0612000 OSNPB_040612000,Os02g0572050 OSNPB_020572050,Os11g0474900 OSNPB_110474900 FUNCTION: Involved in momilactone phytoalexins biosynthesis. Catalyzes the conversion of syn-copalyl diphosphate to the phytoalexin precursor syn-pimara-7,15-diene. {ECO:0000269|PubMed:15388982, ECO:0000269|PubMed:18366162}.,FUNCTION: Involved in phytocassane phytoalexins biosynthesis. Catalyzes the conversion of ent-copalyl diphosphate to the phytoalexin precursor ent-cassa-12,15-diene. {ECO:0000269|PubMed:14675427}.,FUNCTION: Catalyzes the conversion of ent-copalyl diphosphate to the gibberellin precursor ent-kaur-16-ene. MISCELLANEOUS: 9-beta-pimara-7,15-diene is a precursor of the phytoalexins momilactones A and B. Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation). Momilactone B can also act as an allochemical (an antimicrobial and allelopathic agent), being constitutively produced in the root of the plant and secreted to the rhizosphere where it suppresses the growth of neighboring plants and soil microorganisms.,MISCELLANEOUS: Ent-cassa-12,15-diene is a precursor of the phytoalexins phytocassanes A-E. Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation).,MISCELLANEOUS: Plants lacking KS1 display a dwarf phenotype with normal root development, but severe stunting of shoots in seedlings, dark green leaves and failure to initiate flowering. This phenotype can be rescued by treatment with exogenous gibberellin. ENOG411EHNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXSV UGT71B5,UGT71B2 O23382,Q9LSY8,A0A1P8B3E2 U71B5_ARATH,U71B2_ARATH,A0A1P8B3E2_ARATH UDP-glycosyltransferase 71B5 (EC 2.4.1.-),UDP-glycosyltransferase 71B2 (EC 2.4.1.-) (Protein HYPOSTATIN RESISTANCE 1),Glycosyltransferase (EC 2.4.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but resistance to hypostatin treatment. {ECO:0000269|PubMed:17891152}. FUNCTION: Possesses low quercetin 3-O-glucosyltransferase activity in vitro. {ECO:0000269|PubMed:15352060}.,FUNCTION: Glucosyltransferase that glucosylates the cell wall inhibitor hypostatin in vivo to form a bioactive glucoside. {ECO:0000269|PubMed:17891152}. 2.4.1.- 53714,54342,57459 UDP-glycosyltransferase 71B5 (EC 2.4.1.-),UDP-glycosyltransferase 71B2 (EC 2.4.1.-) (Protein HYPOSTATIN RESISTANCE 1),Glycosyltransferase (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glycosyltransferase activity [GO:0008194]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2129905;,locus:2093089; AT4G15280,AT3G21760 UDP-glucose flavonoid 3-O-glucosyltransferase 6-like NA NA NA NA NA NA NA ENOG411EHNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0624300 protein) (cDNA clone:001-101-G07, full insert sequence) Q75LF9 Q75LF9_ORYSJ Os03g0624300 LOC_Os03g42600 Os03g0624300 OsJ_33180 OSJNBb0079B16.10 OSNPB_030624300 ENOG411DR7T Q500W8 Q500W8_ARATH At1g26520 (Cobalamin biosynthesis CobW-like protein) 42013 At1g26520 (Cobalamin biosynthesis CobW-like protein) locus:2197895; AT1G26520 COBW domain-containing protein Os07g0598900 protein (Putative cobW protein) (cDNA clone:J033099K03, full insert sequence),Os07g0594900 protein,Os07g0598900 protein Q7XAM3,A0A0P0X8R2,A0A0N7KNT4 Q7XAM3_ORYSJ,A0A0P0X8R2_ORYSJ,A0A0N7KNT4_ORYSJ OJ1634_B10.106-1 Os07g0598900 OsJ_24998 OSNPB_070598900,Os07g0594900 OSNPB_070594900,Os07g0598900 OSNPB_070598900 ENOG411DR7X SECA2 D8WUA4,F4HY36 SECA2_ARATH,F4HY36_ARATH Protein translocase subunit SECA2, chloroplastic,Protein translocase subunit SecA DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:21051552}. Embryo defective-D. Fernandez-2011 FUNCTION: Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. May have a central role in coupling the hydrolysis of ATP to the transfer of proteins across the membrane. {ECO:0000269|PubMed:21051552}. MISCELLANEOUS: Cannot substitute for SECA1. 119654,203110 Protein translocase subunit SECA2, chloroplastic,Protein translocase subunit SecA chloroplast membrane [GO:0031969]; ATP binding [GO:0005524]; ATPase-coupled protein transmembrane transporter activity [GO:0015462]; chloroplast organization [GO:0009658]; protein import [GO:0017038]; protein targeting [GO:0006605]; regulation of photosynthesis [GO:0010109],chloroplast envelope [GO:0009941]; membrane [GO:0016020]; plastid [GO:0009536]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; embryo development ending in seed dormancy [GO:0009793]; protein import [GO:0017038]; protein targeting [GO:0006605] locus:2036922; AT1G21650 Protein translocase subunit secA Protein translocase subunit SecA A0A0P0Y079 A0A0P0Y079_ORYSJ Os11g0195100 OSNPB_110195100 ENOG411E1E1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Probable E3 ubiquitin-protein ligase XBOS35 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS35) (RING-type E3 ubiquitin transferase XBOS35) (XB3 protein homolog 5) Q7EZ44 XB35_ORYSJ XBOS35 Os08g0258200 LOC_Os08g15840 B1015H11.105 OsJ_26639 ENOG411E1E0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: alpha thalassemia mental retardation syndrome X-linked NA NA NA NA NA NA NA ENOG411E1E3 CCMFC P93286 CCMFC_ARATH Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein (Cytochrome c biogenesis orf452) FUNCTION: Forms a complex with CCMFN1, CCMFN2 and CCMH that performs the assembly of heme with c-type apocytochromes in mitochondria. {ECO:0000269|PubMed:18644794}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07723) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. 50548 Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein (Cytochrome c biogenesis orf452) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; cytochrome complex assembly [GO:0017004]; transport [GO:0006810] ATMG00180 cytochrome C biogenesis Cytochrome c biogenesis Fc Q8HCM9 Q8HCM9_ORYSJ ccmFc ENOG411E1E2 F4HY55 F4HY55_ARATH Myosin heavy chain-like protein 31930 Myosin heavy chain-like protein integral component of membrane [GO:0016021] locus:2032520; AT1G28410 NA Os02g0305600 protein Q6K2Z7 Q6K2Z7_ORYSJ Os02g0305600 OSNPB_020305600 P0543C11.11 ENOG411E1E5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os05g0478700 protein A0A0P0WNY3 A0A0P0WNY3_ORYSJ Os05g0478700 OSNPB_050478700 ENOG411E1E4 KAKU4 Q949W6 KAKU4_ARATH Protein KAKU4 DISRUPTION PHENOTYPE: Aberrant nuclear morphology. {ECO:0000269|PubMed:24824484}. FUNCTION: Required for nucleus structure organization (e.g. size and shape). {ECO:0000269|PubMed:24824484}. 52148 Protein KAKU4 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; nuclear envelope [GO:0005635]; nuclear inner membrane [GO:0005637]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; nuclear membrane organization [GO:0071763] locus:2128176; AT4G31430 NA OSJNBb0022F16.14 protein (Os04g0655600 protein) Q7X776 Q7X776_ORYSJ Os04g0655600 OSJNBb0022F16.14 OSNPB_040655600 ENOG411E1E7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: NEDD4 binding protein Ataxin-2 C-terminal region family protein, expressed (Os03g0180300 protein),Os03g0180300 protein (Fragment) Q10QX0,A0A0P0VTV8,A0A0P0VTW0 Q10QX0_ORYSJ,A0A0P0VTV8_ORYSJ,A0A0P0VTW0_ORYSJ Os03g0180300 LOC_Os03g08270 OsJ_09652 OSNPB_030180300,Os03g0180300 OSNPB_030180300 ENOG411E1E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin carboxyl-terminal hydrolase family 1 Os04g0546400 protein (Fragment) A0A0P0WD30 A0A0P0WD30_ORYSJ Os04g0546400 OSNPB_040546400 ENOG411E1E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase-like NA NA NA NA NA NA NA ENOG411E1EQ RBP47A,RBP47B F4I3B3,Q0WW84,A0A1P8ASD0 RB47A_ARATH,RB47B_ARATH,A0A1P8ASD0_ARATH Polyadenylate-binding protein RBP47A (Poly(A)-binding protein RBP47A) (RNA-binding protein 47A) (AtRBP47A),Polyadenylate-binding protein RBP47B (Poly(A)-binding protein RBP47B) (RNA-binding protein 47B) (AtRBP47B),RNA-binding protein 47A FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. {ECO:0000250}. 48483,48119,49874 Polyadenylate-binding protein RBP47A (Poly(A)-binding protein RBP47A) (RNA-binding protein 47A) (AtRBP47A),Polyadenylate-binding protein RBP47B (Poly(A)-binding protein RBP47B) (RNA-binding protein 47B) (AtRBP47B),RNA-binding protein 47A cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; cellular response to heat [GO:0034605]; mRNA processing [GO:0006397]; response to cytokinin [GO:0009735],cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; cellular response to heat [GO:0034605]; mRNA processing [GO:0006397],RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, and seedlings. {ECO:0000269|PubMed:11105760}.,TISSUE SPECIFICITY: Expressed at low levels in leaves, stems, flowers, and seedlings. {ECO:0000269|PubMed:11105760}. locus:2012211;,locus:2094098; AT1G49600,AT3G19130 RNA-binding protein 47B NA NA NA NA NA NA NA ENOG411E1EP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E1ES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os05g0152400 protein A0A0P0WI84 A0A0P0WI84_ORYSJ Os05g0152400 OSNPB_050152400 ENOG411E1ER emb1974 F4JD91 F4JD91_ARATH NHL domain-containing protein Embryo defective; Cotyledon-D. Meinke-2002 87026 NHL domain-containing protein locus:2077597; AT3G07060 NA Os08g0135300 protein (Fragment) Q0J861 Q0J861_ORYSJ Os08g0135300 Os08g0135300 OSNPB_080135300 ENOG411E1EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E1EY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Invertase_neut OSJNBa0042I15.24 protein (Os04g0409900 protein) Q4JF04 Q4JF04_ORYSJ Os04g0409900 OSJNBa0042I15.24 OSNPB_040409900 ENOG411E1EX DUF7 Q8H0V4,F4IY86 DUF7_ARATH,F4IY86_ARATH DUF724 domain-containing protein 7 (AtDUF7) (ABAP1-interacting protein 1),Uncharacterized protein Homozygotes have a WT phenotype FUNCTION: May act as a link between DNA replication, transcription and chromatin remodeling during flower development. May participate in the repression of LHP1-targeted genes during flower development by direct interaction with LHP1 (PubMed:26538092). May be involved in the polar growth of plant cells via transportation of RNAs (Probable). {ECO:0000269|PubMed:26538092, ECO:0000305|PubMed:19795213}. MISCELLANEOUS: Plants with reduced expression of DUF7 show a slight delay in flowering. {ECO:0000269|PubMed:26538092}. 80740,80868 DUF724 domain-containing protein 7 (AtDUF7) (ABAP1-interacting protein 1),Uncharacterized protein nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; flower development [GO:0009908]; regulation of growth [GO:0040008]; transport [GO:0006810],nucleus [GO:0005634] DEVELOPMENTAL STAGE: Expressed during vegetative to reproductive phase of development, with the main expression occurring in early flower development. {ECO:0000269|PubMed:26538092}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:19795213}. locus:2098078; AT3G62300 Protein of unknown function (DUF724) Os11g0302800 protein (Fragment) Q0IT67 Q0IT67_ORYSJ Os11g0302800 OSNPB_110302800 ENOG411E1EC MJE7.7 Q9LV69,A0A1P8BCQ6,F4K1P8 Q9LV69_ARATH,A0A1P8BCQ6_ARATH,F4K1P8_ARATH At5g48440 (FAD-dependent oxidoreductase family protein) (Uncharacterized protein At5g48440),FAD-dependent oxidoreductase family protein 49804,38191,46653 At5g48440 (FAD-dependent oxidoreductase family protein) (Uncharacterized protein At5g48440),FAD-dependent oxidoreductase family protein mitochondrion [GO:0005739]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:2166076; AT5G48440 FAD dependent oxidoreductase Os09g0514100 protein Q69IN1,A0A0P0XNZ1 Q69IN1_ORYSJ,A0A0P0XNZ1_ORYSJ P0450E05.15-1 Os09g0514100 OSNPB_090514100,Os09g0514100 OSNPB_090514100 ENOG411E1EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein NA NA NA NA NA NA NA ENOG411E1EK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0567500 protein,Os02g0151100 protein (Fragment) A0A0P0YBK6,A0A0P0VEY1 A0A0P0YBK6_ORYSJ,A0A0P0VEY1_ORYSJ Os12g0567500 OSNPB_120567500,Os02g0151100 OSNPB_020151100 ENOG411E1EJ SCPL28 Q8S8K6 SCP28_ARATH Serine carboxypeptidase-like 28 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 52098 Serine carboxypeptidase-like 28 (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in seedlings, roots and senescent leaves. {ECO:0000269|PubMed:15908604}. locus:2058734; AT2G35770 Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411E1EM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase Os03g0347900 protein (Fragment),Os04g0340300 protein (cDNA clone:J023097D21, full insert sequence),Farnesol synthase (Os07g0218200 protein),Os04g0342500 protein,Os01g0611800 protein,Os04g0345400 protein (Fragment),Os04g0344400 protein,Os01g0337100 protein,Os04g0341500 protein (Fragment),Os04g0344100 protein,Os04g0342800 protein,Os03g0348200 protein,Os04g0341800 protein,Os04g0338400 protein,Os04g0339500 protein,Os04g0338600 protein C7IZP5,Q0JE23,A0F0B7,A3ASK1,A0A0P0V545,A0A0P0W9A3,A0A0P0W8T5,A0A0P0W9G0,A0A0P0VXH1,A0A0P0V2G2,A0A0N7KIV4,A0A0P0W963,A0A0P0W8U0,A0A0P0VY91,A0A0P0W8Y6,A0A0P0W8P6,A0A0P0W942,A0A0P0W8S0 C7IZP5_ORYSJ,Q0JE23_ORYSJ,A0F0B7_ORYSJ,A3ASK1_ORYSJ,A0A0P0V545_ORYSJ,A0A0P0W9A3_ORYSJ,A0A0P0W8T5_ORYSJ,A0A0P0W9G0_ORYSJ,A0A0P0VXH1_ORYSJ,A0A0P0V2G2_ORYSJ,A0A0N7KIV4_ORYSJ,A0A0P0W963_ORYSJ,A0A0P0W8U0_ORYSJ,A0A0P0VY91_ORYSJ,A0A0P0W8Y6_ORYSJ,A0A0P0W8P6_ORYSJ,A0A0P0W942_ORYSJ,A0A0P0W8S0_ORYSJ Os03g0347900 OSNPB_030347900,Os04g0340300 Os04g0340300 OsJ_14326 OSNPB_040340300,TPS13 Os07g0218200 OSNPB_070218200,Os04g0342500 OsJ_14337 OSNPB_040342500,Os01g0611800 OSNPB_010611800,Os04g0345400 OSNPB_040345400,Os04g0344400 OSNPB_040344400,Os01g0337100 OSNPB_010337100,Os04g0341500 OSNPB_040341500,Os04g0344100 OSNPB_040344100,Os04g0342800 OSNPB_040342800,Os03g0348200 OSNPB_030348200,Os04g0341800 OSNPB_040341800,Os04g0338400 OSNPB_040338400,Os04g0339500 OSNPB_040339500,Os04g0338600 OSNPB_040338600 ENOG411DR79 MER3,RCK Q5D892,A0A1I9LN50 MER3_ARATH,A0A1I9LN50_ARATH DExH-box ATP-dependent RNA helicase DExH17 (EC 3.6.4.13) (ATP-dependent DNA helicase homolog MER3) (EC 3.6.4.12) (Protein ROCK-N-ROLLERS),DNA helicase ROCK-N-ROLLERS DISRUPTION PHENOTYPE: Low levels of fertility due to a significant decrease of meiotic crossovers. {ECO:0000269|PubMed:15854901, ECO:0000269|PubMed:16045469}. Normal phenotype during vegetative growth and floral organ development; but reduced fertility.,Short fruits low fertility (about 13% of wild type seed set).,Anthers contain polyads with five or six microspores (compared to four in wild-type). Reduced fertility due to defects in meiosis-H. Ma-2005 FUNCTION: DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover). {ECO:0000269|PubMed:15854901, ECO:0000269|PubMed:16045469}. 3.6.4.13; 3.6.4.12 128290,129669 DExH-box ATP-dependent RNA helicase DExH17 (EC 3.6.4.13) (ATP-dependent DNA helicase homolog MER3) (EC 3.6.4.12) (Protein ROCK-N-ROLLERS),DNA helicase ROCK-N-ROLLERS cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; DNA binding [GO:0003677]; rRNA binding [GO:0019843]; chiasma assembly [GO:0051026]; reciprocal meiotic recombination [GO:0007131]; RNA secondary structure unwinding [GO:0010501],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed in meiocytes during meiosis. {ECO:0000269|PubMed:15854901, ECO:0000269|PubMed:16045469}. locus:2089144; AT3G27730 Sec63 ATP-dependent DNA helicase MER3 homolog (EC 3.6.4.12) (Protein RICE MEIOTIC CROSSOVER 1),Os02g0617500 protein (Fragment) B6DMK2,A0A0P0VLQ8 MER3_ORYSJ,A0A0P0VLQ8_ORYSJ MER3 RMC1 Os02g0617500 LOC_Os02g40450,Os02g0617500 OSNPB_020617500 DISRUPTION PHENOTYPE: Complete loss of fertility due to defect in meiosis. {ECO:0000269|PubMed:19470578}. FUNCTION: DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover) (PubMed:19470578, PubMed:19417775). Works cooperatively with ZIP4 to promote crossovers (PubMed:22393242). {ECO:0000269|PubMed:19417775, ECO:0000269|PubMed:19470578, ECO:0000269|PubMed:22393242}. ENOG411DR78 LPAT3 Q9SYC8 LPAT3_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransferase 3 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 3) FUNCTION: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position. Has preference for C-18-CoA substrates compared to C-16-CoA substrates. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 2/3. ARA:AT1G51260-MONOMER; R-ATH-1483166;R-ATH-6811436; 2.3.1.51; 2.3.1.51 43435 1-acyl-sn-glycerol-3-phosphate acyltransferase 3 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 3) integral component of membrane [GO:0016021]; 1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; CDP-diacylglycerol biosynthetic process [GO:0016024] TISSUE SPECIFICITY: Predominantly expressed in pollen. {ECO:0000269|PubMed:15772283}. locus:2008226; AT1G51260 Acyltransferase NA NA NA NA NA NA NA ENOG411DSHR MSL10 Q9LYG9 MSL10_ARATH Mechanosensitive ion channel protein 10 (Mechanosensitive channel of small conductance-like 10) (MscS-Like protein 10) (AtMSL10) Shifts single-channel amplitude peak from 10pa (WT) to 7.3pa,Abolished stretch-activate mechanosensitive channel activity,Reduced stretch-activated mechanosensitive channel activity. Abnormal stretch-activated channel activity-E. Haswell-2008 FUNCTION: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. {ECO:0000269|PubMed:18485707, ECO:0000269|PubMed:19704841}. 83032 Mechanosensitive ion channel protein 10 (Mechanosensitive channel of small conductance-like 10) (MscS-Like protein 10) (AtMSL10) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; mechanically-gated ion channel activity [GO:0008381]; anion transport [GO:0006820]; detection of mechanical stimulus [GO:0050982]; leaf senescence [GO:0010150]; programmed cell death in response to reactive oxygen species [GO:0097468] TISSUE SPECIFICITY: Detected in the root tip and throughout the vasculature of the root and leaf. {ECO:0000269|PubMed:18485707}. locus:2143069; AT5G12080 mechanosensitive ion channel domain-containing Mechanosensitive ion channel protein Q69NN6 Q69NN6_ORYSJ Os06g0205600 Os06g0205600 OSJNBb0015B15.25 OSNPB_060205600 ENOG411DSHQ SCL14,SCL9 Q9XE58,O80933,A0A1P8AXT9 SCL14_ARATH,SCL9_ARATH,A0A1P8AXT9_ARATH Scarecrow-like protein 14 (AtSCL14) (GRAS family protein 2) (AtGRAS-2),Scarecrow-like protein 9 (AtSCL9) (GRAS family protein 13) (AtGRAS-13),GRAS family transcription factor The levels of transcripts for several genes such as At3g28740 (CYP81D11) and At5g16980 (NADP-dependent oxidoreductase) are altered in scl14 mutant plants. Some of these genes have as-1-like elements in their promoters. Sensitive to INA (functional analog of SA) and TIBA (inhibitor of auxin transport)-C. Gatz-2008 FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 85929,80915,79727 Scarecrow-like protein 14 (AtSCL14) (GRAS family protein 2) (AtGRAS-2),Scarecrow-like protein 9 (AtSCL9) (GRAS family protein 13) (AtGRAS-13),GRAS family transcription factor cytosol [GO:0005829]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; response to xenobiotic stimulus [GO:0009410]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.,TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. locus:2025022;,locus:2040701; AT1G07530,AT2G37650 Scarecrow-like protein GRAS family transcription factor containing protein, expressed (Os03g0690600 protein) (Putative transcription factor) (cDNA clone:J033037F15, full insert sequence) (cDNA clone:J033069K04, full insert sequence) Q6AVK7 Q6AVK7_ORYSJ OSJNBa0022C08.1 LOC_Os03g48450 Os03g0690600 OsJ_12174 OSNPB_030690600 ENOG411DSHW ATPD Q9SSS9 ATPD_ARATH ATP synthase subunit delta, chloroplastic (ATP synthase F(1) sector subunit delta) (F-type ATPase subunit delta) DISRUPTION PHENOTYPE: Seedling lethal. High-chlorophyll (Chl)-fluorescence phenotype associated with an increase in non-photochemical quenching of Chl fluorescence and a higher de-epoxidation state of xanthophyll cycle pigments under low light. Impaired electron flow in photosystems I and II. {ECO:0000269|PubMed:12970486}. Seedling lethal; Pale yellow seedlings; Pigment defective embryo-D. Leister-2003 FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (Potential). Essential for photosynthesis, probably by facilitating electron transport in both photosystems I and II (PubMed:12970486). {ECO:0000255|HAMAP-Rule:MF_01416, ECO:0000269|PubMed:12970486}.; FUNCTION: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction. {ECO:0000255|HAMAP-Rule:MF_01416}. 25669 ATP synthase subunit delta, chloroplastic (ATP synthase F(1) sector subunit delta) (F-type ATPase subunit delta) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; plastoglobule [GO:0010287]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; stromule [GO:0010319]; thylakoid [GO:0009579]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986]; defense response to bacterium [GO:0042742]; photosynthesis [GO:0015979]; photosynthetic electron transport in photosystem I [GO:0009773]; photosynthetic electron transport in photosystem II [GO:0009772]; response to cold [GO:0009409]; response to cytokinin [GO:0009735] locus:2136922; AT4G09650 ATP synthase delta chain Os02g0750100 protein A3ABE0 A3ABE0_ORYSJ Os02g0750100 OsJ_08394 OSNPB_020750100 ENOG411DSHV GSTZ1,GSTZ2 Q9ZVQ3,Q9ZVQ4,A0A1P8B2F0,F4IQD1 GSTZ1_ARATH,GSTZ2_ARATH,A0A1P8B2F0_ARATH,F4IQD1_ARATH Glutathione S-transferase Z1 (AtGSTZ1) (EC 2.5.1.18) (GST class-zeta member 1) (Glutathione S-transferase 18) (Maleylacetone isomerase) (MAI) (EC 5.2.1.-),Glutathione S-transferase Z2 (AtGSTZ2) (EC 2.5.1.18) (GST class-zeta member 2),Glutathione S-transferase zeta 1 FUNCTION: Acts a maleylacetone isomerase. Also catalyzes the glutathione-dependent dehalogenation of dichloroacetic acid to glyoxylic acid. In vitro, possesses glutathione peroxidase activity toward cumene hydroperoxide and linoleic acid-13-hydroperoxide. {ECO:0000269|PubMed:12090627}.,FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT2G02390-MONOMER;,ARA:AT2G02380-MONOMER; R-ATH-156590;R-ATH-71182; 5.2.1.2; Tyrosine metabolism (00350),Microbial metabolism in diverse environments (01120),Styrene degradation (00643),Metabolic pathways (01100) 2.5.1.18; 5.2.1.-,2.5.1.18 24888,25352,21755,21578 Glutathione S-transferase Z1 (AtGSTZ1) (EC 2.5.1.18) (GST class-zeta member 1) (Glutathione S-transferase 18) (Maleylacetone isomerase) (MAI) (EC 5.2.1.-),Glutathione S-transferase Z2 (AtGSTZ2) (EC 2.5.1.18) (GST class-zeta member 2),Glutathione S-transferase zeta 1 cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; maleylacetoacetate isomerase activity [GO:0016034]; peroxidase activity [GO:0004601]; aromatic amino acid family metabolic process [GO:0009072]; homogentisate catabolic process [GO:1902000]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; aromatic amino acid family metabolic process [GO:0009072]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; transferase activity [GO:0016740]; aromatic amino acid family metabolic process [GO:0009072] locus:2056161;,locus:2056261; AT2G02390,AT2G02380 Glutathione S-transferase Glutathione S-transferase zeta class, putative (Maleylacetoacetate isomerase) (Os11g0245100 protein) (cDNA, clone: J065182P11, full insert sequence),Os02g0564000 protein (Putative glutathione s-transferase) (cDNA clone:J033022J16, full insert sequence) Q53M09,Q6Z7F5 Q53M09_ORYSJ,Q6Z7F5_ORYSJ Os11g0245100 LOC_Os11g14040 OsJ_33511 OSNPB_110245100,Os02g0564000 Os02g0564000 OJ1712_E04.21 OSNPB_020564000 P0020C11.10 ENOG411DSHI ALTERED SEED GERMINATION 1 Q9SUG8,Q9ZUI1 Q9SUG8_ARATH,Q9ZUI1_ARATH ATP-dependent DNA helicase (Uncharacterized protein AT4g30780) (Uncharacterized protein T10C21.130),ATP-dependent DNA helicase (At2g24100) (At2g24100/F27D4.1) (Uncharacterized protein At2g24100; F27D4.1) 64574,52212 ATP-dependent DNA helicase (Uncharacterized protein AT4g30780) (Uncharacterized protein T10C21.130),ATP-dependent DNA helicase (At2g24100) (At2g24100/F27D4.1) (Uncharacterized protein At2g24100; F27D4.1) helicase activity [GO:0004386] locus:2131934;,locus:2047480; AT4G30780,AT2G24100 expressed protein Os02g0793800 protein,Os06g0186600 protein (Fragment) A0A0P0VQJ3,A0A0P0WTV8 A0A0P0VQJ3_ORYSJ,A0A0P0WTV8_ORYSJ Os02g0793800 OSNPB_020793800,Os06g0186600 OSNPB_060186600 ENOG411DSHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RINGv Os05g0452800 protein (Putative zinc finger protein) (cDNA clone:J033093B10, full insert sequence) Q6I648 Q6I648_ORYSJ Os05g0452800 OJ1126_D01.2 OJ1576_F01.15 OSNPB_050452800 ENOG411DSHG LRR-RLK,MUA22.21 Q84JF8,C0LGT2,A0A1P8BA72,A0A1P8BA66 Q84JF8_ARATH,C0LGT2_ARATH,A0A1P8BA72_ARATH,A0A1P8BA66_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative leucine-rich repeat transmembrane protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Fragment),Leucine-rich repeat protein kinase family protein 76266,85577,85230,88931 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative leucine-rich repeat transmembrane protein kinase),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Fragment),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2167326;,locus:2174673; AT5G63410 inactive leucine-rich repeat receptor-like protein kinase At3g03770-like Leucine Rich Repeat family protein, expressed (Os11g0308800 protein) (Similar to receptor protein kinase-like protein) (cDNA clone:J013158B15, full insert sequence) Q53M68 Q53M68_ORYSJ Os11g0308800 LOC_Os11g20360 OSNPB_110308800 ENOG411DSHD PME47,PME25 Q9FF77,Q94CB1 PME47_ARATH,PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 47 [Includes: Pectinesterase inhibitor 47 (Pectin methylesterase inhibitor 47); Pectinesterase 47 (PE 47) (EC 3.1.1.11) (Pectin methylesterase 47) (AtPME47)],Probable pectinesterase/pectinesterase inhibitor 25 [Includes: Pectinesterase inhibitor 25 (Pectin methylesterase inhibitor 25); Pectinesterase 25 (PE 25) (EC 3.1.1.11) (Pectin methylesterase 25) (AtPME25)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G04970-MONOMER;,ARA:AT3G10720-MONOMER; 3.1.1.11 68148,67956 Probable pectinesterase/pectinesterase inhibitor 47 [Includes: Pectinesterase inhibitor 47 (Pectin methylesterase inhibitor 47); Pectinesterase 47 (PE 47) (EC 3.1.1.11) (Pectin methylesterase 47) (AtPME47)],Probable pectinesterase/pectinesterase inhibitor 25 [Includes: Pectinesterase inhibitor 25 (Pectin methylesterase inhibitor 25); Pectinesterase 25 (PE 25) (EC 3.1.1.11) (Pectin methylesterase 25) (AtPME25)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2175334;,locus:2103212; AT5G04970,AT3G10720 pectinesterase pectinesterase inhibitor NA NA NA NA NA NA NA ENOG411E6RI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dihydrouridine synthase (Dus) NA NA NA NA NA NA NA ENOG411DU8R RBP47C,RBP47C' Q9SX79,Q9SX80,A0A1P8APV6 RB47C_ARATH,R47CP_ARATH,A0A1P8APV6_ARATH Polyadenylate-binding protein RBP47C (Poly(A)-binding protein RBP47C) (RNA-binding protein 47C) (AtRBP47C),Polyadenylate-binding protein RBP47C' (Poly(A)-binding protein RBP47C') (RNA-binding protein 47C') (AtRBP47C prime) (AtRBP47C'),RNA-binding protein 47C FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. {ECO:0000250}. 48498,48632,35634 Polyadenylate-binding protein RBP47C (Poly(A)-binding protein RBP47C) (RNA-binding protein 47C) (AtRBP47C),Polyadenylate-binding protein RBP47C' (Poly(A)-binding protein RBP47C') (RNA-binding protein 47C') (AtRBP47C prime) (AtRBP47C'),RNA-binding protein 47C cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; cellular response to heat [GO:0034605]; mRNA processing [GO:0006397],RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, and seedlings. {ECO:0000269|PubMed:11105760}. locus:2015403;,locus:2015398; AT1G47490,AT1G47500 RNA-binding protein Os09g0462700 protein (Fragment),Os02g0567900 protein (Fragment),Os04g0449900 protein Q0J148,Q0E094,Q0JCT9,A0A0N7KQY2 Q0J148_ORYSJ,Q0E094_ORYSJ,Q0JCT9_ORYSJ,A0A0N7KQY2_ORYSJ Os09g0462700 OSNPB_090462700,Os02g0567900 Os02g0567900 OSNPB_020567900,Os04g0449900 Os04g0449900 OSNPB_040449900 ENOG411DU88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain MSP domain containing protein, expressed (Os10g0507600 protein) Q337D8 Q337D8_ORYSJ Os10g0507600 LOC_Os10g36350 Os10g0507600 OSNPB_100507600 ENOG411E436 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton (By similarity) Autophagy-related protein 8A (Autophagy-related ubiquitin-like modifier ATG8A) Q69RC4 ATG8A_ORYSJ ATG8A APG8A Os07g0512200 LOC_Os07g32800 OsJ_023466 OSJNBb0041J06.103 P0580A11.122 FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. ENOG411E437 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA actin filament depolymerization Actin-depolymerizing factor 4 (ADF-4) (OsADF4),Os03g0820600 protein (Fragment) Q84TB3,A0A0P0W538 ADF4_ORYSJ,A0A0P0W538_ORYSJ ADF4 Os03g0820600 LOC_Os03g60590 OJ1754_E06.22,Os03g0820600 OSNPB_030820600 DISRUPTION PHENOTYPE: Decreased germination rates due to decreased alpha-amylase activity during seed germination. Increased susceptibility to infection by the fungal blast (Magnaporthe grisea), bacterial blight (Xanthomonas oryzae pv. oryzae, Xoo) and the herbivorous insect brown planthopper (Nilaparvata lugens, BPH). Almost no induction of the defense-related genes PR1A, LOX2 and CHS1 after exposure to biotic stresses. {ECO:0000269|PubMed:24033867}. FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (By similarity). Involved in innate immunity. Required for the expression of defense-related genes PR1A, LOX2 and CHS1 upon biotic stresses. Required for basal resistance to the fungal blast (Magnaporthe grisea), bacterial blight (Xanthomonas oryzae pv. oryzae, Xoo) and the herbivorous insect brown planthopper (Nilaparvata lugens, BPH). Involved in the promotion of seed germination. Required for the expression of alpha-amylase genes during seed germination (PubMed:24033867). {ECO:0000250|UniProtKB:Q9ZSK3, ECO:0000269|PubMed:24033867}. ENOG411E434 YUP8H12.17,YUP8H12.18 O23046,O23047,Q9ZV66 O23046_ARATH,O23047_ARATH,Q9ZV66_ARATH Transmembrane protein 97, Putative (YUP8H12.17),At1g05210 (Transmembrane protein 97, Putative) (Uncharacterized protein At1g05210) (YUP8H12.18),At2g32380 (Expressed protein) (Transmembrane protein 97, Putative) (Uncharacterized protein At2g32380) 17836,18311,18314 Transmembrane protein 97, Putative (YUP8H12.17),At1g05210 (Transmembrane protein 97, Putative) (Uncharacterized protein At1g05210) (YUP8H12.18),At2g32380 (Expressed protein) (Transmembrane protein 97, Putative) (Uncharacterized protein At2g32380) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2207250;,locus:2207150;,locus:2062530; AT1G05220,AT1G05210,AT2G32380 Protein of unknown function (DUF2781) Os07g0458500 protein,Os07g0458700 protein (cDNA clone:001-112-G08, full insert sequence) Q84YQ5,Q84YQ4 Q84YQ5_ORYSJ,Q84YQ4_ORYSJ Os07g0458500 OsJ_24131 OSJNBa0027N13.142 OSJNBa0040K22.102 OSNPB_070458500,Os07g0458700 OsJ_24132 OSJNBa0027N13.144 OSJNBa0040K22.104 OSNPB_070458700 ENOG411E435 CAMBP25 O80683 CAB25_ARATH Calmodulin-binding protein 25 (AtCAMBP25) (VQ motif-containing protein 15) (AtVQ15) FUNCTION: Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance. {ECO:0000269|PubMed:15086802}. 25377 Calmodulin-binding protein 25 (AtCAMBP25) (VQ motif-containing protein 15) (AtVQ15) nucleus [GO:0005634]; calmodulin binding [GO:0005516]; regulation of salicylic acid metabolic process [GO:0010337]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:15086802}. locus:2063265; AT2G41010 protein OF 25 KDA NA NA NA NA NA NA NA ENOG411E433 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Expressed protein (Os03g0187400 protein) (cDNA clone:J023004K09, full insert sequence) Q10QQ7 Q10QQ7_ORYSJ LOC_Os03g08840 Os03g0187400 OSNPB_030187400 ENOG411E430 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RbcX protein Os07g0569600 protein (cDNA clone:J013109B01, full insert sequence) Q7XIH6 Q7XIH6_ORYSJ Os07g0569600 Os07g0569600 OJ1019_E02.20 OSNPB_070569600 ENOG411E431 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Embryo-specific protein 3 (ATS3) NA NA NA NA NA NA NA ENOG411E438 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os02g0686800 protein (cDNA clone:J023077C02, full insert sequence) Q6ZHB7 Q6ZHB7_ORYSJ Os02g0686800 OJ1717_A09.41 OsJ_07970 OSNPB_020686800 ENOG411E439 RPS20A; RPS20C,RPS20B P49200,Q9STY6 RS201_ARATH,RS202_ARATH 40S ribosomal protein S20-1,40S ribosomal protein S20-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 13878,13693 40S ribosomal protein S20-1,40S ribosomal protein S20-2 cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255] locus:2075949;locus:2167938;,locus:2099535; AT3G45030AT5G62300;,AT3G47370 40s ribosomal protein 40S ribosomal protein S20,40S ribosomal protein S20, putative, expressed (Os03g0249400 protein) (cDNA clone:001-104-D06, full insert sequence),40S ribosomal protein S20, putative, expressed (Os10g0170200 protein) (Putative ribosomal protein S10p/S20e) (cDNA clone:J033050C15, full insert sequence) P35686,Q10P27,Q8LNL2 RS20_ORYSJ,Q10P27_ORYSJ,Q8LNL2_ORYSJ RPS20 Os06g0134000 LOC_Os06g04290 OsJ_20022 P0001H02.5-1 P0679C08.43-1,Os03g0249400 LOC_Os03g14530 Os03g0249400 OsJ_10145 OSNPB_030249400,OSJNBa0071I20.6 LOC_Os10g08930 Os10g0170200 OsJ_30847 OSNPB_100170200 ENOG411E43V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0685700 protein,Os06g0688850 protein A0A0P0WGL9,A0A0P0X0M2 A0A0P0WGL9_ORYSJ,A0A0P0X0M2_ORYSJ Os04g0685700 OSNPB_040685700,Os06g0688850 OSNPB_060688850 ENOG411E43W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CS domain Expressed protein (Os03g0381300 protein) (Putative ripening regulated protein) Q75M67 Q75M67_ORYSJ Os03g0381300 LOC_Os03g26460 Os03g0381300 OSJNBa0011H24.18 OSNPB_030381300 ENOG411E43T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase NA NA NA NA NA NA NA ENOG411E43U ATL67,ATL68 O82353,Q9M313 ATL67_ARATH,ATL68_ARATH RING-H2 finger protein ATL67 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL67),RING-H2 finger protein ATL68 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL68) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 23097,23224 RING-H2 finger protein ATL67 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL67),RING-H2 finger protein ATL68 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL68) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2062892;,locus:2082762; AT2G46160,AT3G61550 RING-H2 finger protein Os05g0526600 protein Q65X88 Q65X88_ORYSJ Os05g0526600 OJ1593_C11.14 OSNPB_050526600 ENOG411E43R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (NAC) domain-containing protein NA NA NA NA NA NA NA ENOG411E43S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zipper protein Homeobox-leucine zipper protein HOX28 (HD-ZIP protein HOX28) (Homeodomain transcription factor HOX28) (OsHox28) Q5VPE5 HOX28_ORYSJ HOX28 Os06g0140400 LOC_Os06g04850 OsJ_019259 OSJNBa0041F13.45 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E43P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Metal-transporting P-type ATPase-like protein (Os07g0623200 protein) (cDNA clone:J023008N22, full insert sequence) (cDNA clone:J033124M20, full insert sequence) Q7XI43 Q7XI43_ORYSJ P0524E08.111 Os07g0623200 OSNPB_070623200 ENOG411E43Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0558700 protein (Fragment) Q0DQU0 Q0DQU0_ORYSJ Os03g0558700 OSNPB_030558700 ENOG411E43Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0166500 protein (cDNA clone:J033060C18, full insert sequence) (cDNA clone:J033122A19, full insert sequence) (p0028E10.1 protein) Q9AS90 Q9AS90_ORYSJ P0028E10.1 Os01g0166500 OSNPB_010166500 P0701D05.23 ENOG411E43X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein binding zinc ion binding NA NA NA NA NA NA NA ENOG411E43Y GNA1 Q9LFU9 GNA1_ARATH Glucosamine 6-phosphate N-acetyltransferase (EC 2.3.1.4) (Glucose-6-phosphate acetyltransferase 1) (AtGNA1) (Phosphoglucosamine acetylase) (Phosphoglucosamine transacetylase) (Protein LIGNESCENS) DISRUPTION PHENOTYPE: Retarded vegetative growth, delayed flowering and short and thick inflorescence stems and siliques. {ECO:0000269|PubMed:22932674}. FUNCTION: Acetyltransferase involved in UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthesis. UDP-GlcNAc is an essential metabolite that serves as an initial sugar donor for N-glycan synthesis and thus plays an important role in protein and lipid glycosylation. {ECO:0000269|PubMed:22329777, ECO:0000269|PubMed:22932674}. MISCELLANEOUS: The mutant lignescens (lig) was originally isolated as a temperature-sensitive mutant that exhibits ectopic lignin deposition and growth defects under high-temperature conditions. {ECO:0000305|PubMed:22932674}. PATHWAY: Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate from alpha-D-glucosamine 6-phosphate (route I): step 1/2. R-ATH-446210; 2.3.1.4; 2.3.1.4 17028 Glucosamine 6-phosphate N-acetyltransferase (EC 2.3.1.4) (Glucose-6-phosphate acetyltransferase 1) (AtGNA1) (Phosphoglucosamine acetylase) (Phosphoglucosamine transacetylase) (Protein LIGNESCENS) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; glucosamine 6-phosphate N-acetyltransferase activity [GO:0004343]; N-acetylglucosamine metabolic process [GO:0006044]; UDP-N-acetylglucosamine biosynthetic process [GO:0006048] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:22329777}. locus:2143226; AT5G15770 glucosamine 6-phosphate N-acetyltransferase Glucosamine 6-phosphate N-acetyltransferase 1 (EC 2.3.1.4) (Glucose-6-phosphate acetyltransferase 1) (OsGNA1) (Phosphoglucosamine acetylase 1) (Phosphoglucosamine transacetylase 1),Probable glucosamine 6-phosphate N-acetyltransferase 2 (EC 2.3.1.4) (Glucose-6-phosphate acetyltransferase 2) (Phosphoglucosamine acetylase 2) (Phosphoglucosamine transacetylase 2),Os02g0717700 protein (Fragment) Q5U9F2,C7IZ16,A0A0P0VNS7 GNA1_ORYSJ,GNA2_ORYSJ,A0A0P0VNS7_ORYSJ GNA1 Os09g0488000 LOC_Os09g31310,Os02g0717700 LOC_Os02g48650 OsJ_08156,Os02g0717700 OSNPB_020717700 DISRUPTION PHENOTYPE: Short roots, disruption of microtubules and shrinkage of cells in the root elongation zone. {ECO:0000269|PubMed:15849305}. FUNCTION: Acetyltransferase involved in de novo biosynthesis of UDP-N-acetylglucosamine (UDP-GlcNAc) in roots and is required for maintaining normal root cell shape. UDP-GlcNAc is an essential metabolite that serves as an initial sugar donor for N-glycan synthesis and thus plays an important role in protein and lipid glycosylation. {ECO:0000269|PubMed:15849305}.,FUNCTION: Acetyltransferase involved in UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthesis. UDP-GlcNAc is an essential metabolite that serves as an initial sugar donor of N-glycan synthesis and thus plays an important role in protein and lipid glycosylation (By similarity). {ECO:0000250|UniProtKB:Q9LFU9}. ENOG411E43F Q29Q75 Q29Q75_ARATH At4g19400 (Profilin family protein) 16045 At4g19400 (Profilin family protein) locus:2140421; AT4G19400 NA Os05g0241400 protein (cDNA clone:002-133-E05, full insert sequence) Q60E22 Q60E22_ORYSJ Os05g0241400 OSJNBa0004B23.1 OSNPB_050241400 ENOG411E43G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0365200 protein,Os07g0583900 protein Q8H4W0,A0A0P0X8X9 Q8H4W0_ORYSJ,A0A0P0X8X9_ORYSJ OJ1484_G09.118 Os08g0365200 OSNPB_080365200,Os07g0583900 OSNPB_070583900 ENOG411E43D F2A19.60 Q9XF92 Q9XF92_ARATH BRH1 RING finger protein (Brassinosteroid-responsive RING-H2) (Putative RING finger protein) (RING finger protein) 20060 BRH1 RING finger protein (Brassinosteroid-responsive RING-H2) (Putative RING finger protein) (RING finger protein) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to brassinosteroid [GO:0009741]; response to chitin [GO:0010200] locus:2082757; AT3G61460 E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411E43E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Response regulator receiver domain NA NA NA NA NA NA NA ENOG411E43B HIPP03,MAE1.5 Q9FJH5,F4K0H3 HIP3_ARATH,F4K0H3_ARATH Heavy metal-associated isoprenylated plant protein 3 (AtHIP03) (AtHIPP3),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. Binds high amounts of zinc. May act as an upstream regulator of the salicylate-dependent pathogen response. Involved in abiotic stress responses, and seed and flower development. {ECO:0000269|PubMed:25913773}. MISCELLANEOUS: Plants over-expressing HIPP3 show delayed growth of inflorescence. {ECO:0000269|PubMed:25913773}. 30984,33152 Heavy metal-associated isoprenylated plant protein 3 (AtHIP03) (AtHIPP3),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; zinc ion binding [GO:0008270]; metal ion transport [GO:0030001]; negative regulation of flower development [GO:0009910],cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2159310; AT5G60800 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E43A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA linker histone H1 and H5 family Os03g0711600 protein (Fragment),Os03g0711600 protein A0A0P0W2K2,A0A0P0W2V4 A0A0P0W2K2_ORYSJ,A0A0P0W2V4_ORYSJ Os03g0711600 OSNPB_030711600 ENOG411E43N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0676400 protein A0A0P0WGA9 A0A0P0WGA9_ORYSJ Os04g0676400 OSNPB_040676400 ENOG411E43J DRT112,PETE,PETE1 P42699,P11490,A0A1P8APR2 PLAS2_ARATH,PLAS1_ARATH,A0A1P8APR2_ARATH Plastocyanin major isoform, chloroplastic (DNA-damage-repair/toleration protein DRT112),Plastocyanin minor isoform, chloroplastic,Plastocyanin Lower biomass than WT. Delayed bolting. Reduced copper accumulation.,Delayed bolting. Reduced copper accumulation. Reduced iron accumulation. FUNCTION: Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. Seems to be the major plastocyanin in Arabidopsis. {ECO:0000269|PubMed:11034343}.,FUNCTION: Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. Seems to be a minor plastocyanin in Arabidopsis.,FUNCTION: Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. {ECO:0000256|RuleBase:RU363020}. 16984,17589,21872 Plastocyanin major isoform, chloroplastic (DNA-damage-repair/toleration protein DRT112),Plastocyanin minor isoform, chloroplastic,Plastocyanin chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; plastid thylakoid membrane [GO:0055035]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; copper ion binding [GO:0005507]; electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity [GO:0046028]; protein domain specific binding [GO:0019904]; copper ion homeostasis [GO:0055070]; negative regulation of translation [GO:0017148]; oxidation-reduction process [GO:0055114]; response to copper ion [GO:0046688],chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; copper ion binding [GO:0005507]; electron carrier activity [GO:0009055]; oxidation-reduction process [GO:0055114],chloroplast thylakoid membrane [GO:0009535]; copper ion binding [GO:0005507]; electron carrier activity [GO:0009055]; oxidation-reduction process [GO:0055114] locus:2012928;,locus:2199787; AT1G20340,AT1G76100 Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I Plastocyanin, chloroplastic Q0DFC9 PLAS_ORYSJ PETE Os06g0101600 LOC_Os06g01210 OsJ_019001 OSJNBa0075G19.6 FUNCTION: Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. {ECO:0000250|UniProtKB:P18068}. ENOG411E2HV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0157800 protein (cDNA clone:J013032K03, full insert sequence) Q7EZD4 Q7EZD4_ORYSJ P0498E12.102 Os08g0157800 OsJ_26108 OSNPB_080157800 ENOG411E8M4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0800000 protein (Fragment) A0A0P0V9B0 A0A0P0V9B0_ORYSJ Os01g0800000 OSNPB_010800000 ENOG411E8M6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0965800 protein (cDNA clone:002-133-D09, full insert sequence) Q8LHD3 Q8LHD3_ORYSJ Os01g0965800 OSNPB_010965800 P0458E05.21 ENOG411E8M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Component of the cytochrome b6-f complex which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) cyclic electron flow around PSI and state transitions. PetL is important for photoautotrophic growth as well as for electron transfer efficiency and stability of the cytochrome b6-f complex (By similarity) NA NA NA NA NA NA NA ENOG411E8MM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised BCR YnfA/UPF0060 family NA NA NA NA NA NA NA ENOG411E8MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8MJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Iron-containing alcohol dehydrogenase NA NA NA NA NA NA NA ENOG411E8MG Q9C6F2 Q9C6F2_ARATH Uncharacterized protein T32G9.25 17197 Uncharacterized protein T32G9.25 response to UV-B [GO:0010224] locus:2203304; AT1G35210 NA NA NA NA NA NA NA NA ENOG411E8MC CLE3,CLE4 Q3EDH8,Q8S8N0 CLE3_ARATH,CLE4_ARATH CLAVATA3/ESR (CLE)-related protein 3 [Cleaved into: CLE3p],CLAVATA3/ESR (CLE)-related protein 4 [Cleaved into: CLE4p] FUNCTION: Extracellular signal peptide that regulates cell fate. {ECO:0000269|PubMed:16489133}. 9481,9052 CLAVATA3/ESR (CLE)-related protein 3 [Cleaved into: CLE3p],CLAVATA3/ESR (CLE)-related protein 4 [Cleaved into: CLE4p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275],extracellular space [GO:0005615]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275]; regulation of meristem growth [GO:0010075] TISSUE SPECIFICITY: Mostly expressed in roots, stems and apex, and, to a lower extent, in seedlings, leaves, flowers, siliques and pollen. {ECO:0000269|PubMed:12602871}.,TISSUE SPECIFICITY: Expressed in roots and seedlings. {ECO:0000269|PubMed:12602871}. locus:505006104;,locus:504955980; AT1G06225,AT2G31081 Inherit from euNOG: cell-cell signaling involved in cell fate commitment NA NA NA NA NA NA NA ENOG411E8MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0670100 protein A0A0P0X9Z2 A0A0P0X9Z2_ORYSJ Os07g0670100 OSNPB_070670100 ENOG411E8MV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isochorismatase family NA NA NA NA NA NA NA ENOG411EKGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EKGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transglycosylase NA NA NA NA NA NA NA ENOG411DQXI AUG1 F4IK01,Q9SJ01 AUG1_ARATH,Q9SJ01_ARATH AUGMIN subunit 1,HAUS augmin-like complex subunit (Uncharacterized protein At2g21980) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:22505726}. Embryo defective; Gametophyte defective (inferred)-D. Meinke-2009 FUNCTION: Involved in microtubules reorganization during spindle and phragmoplast development. {ECO:0000269|PubMed:22505726}. 33622,6861 AUGMIN subunit 1,HAUS augmin-like complex subunit (Uncharacterized protein At2g21980) HAUS complex [GO:0070652]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; spindle [GO:0005819]; cell division [GO:0051301]; spindle assembly [GO:0051225] locus:2040247;,locus:2052521; AT2G41350,AT2G21980 Inherit from euNOG: HAUS augmin-like complex subunit 1 Os08g0240600 protein A0A0P0XDN7 A0A0P0XDN7_ORYSJ Os08g0240600 OSNPB_080240600 ENOG411DQXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tropinone reductase Os04g0293300 protein,OSJNBb0068N06.12 protein (Os04g0293800 protein),Os11g0438700 protein (Tropinone reductase, putative, expressed) (cDNA clone:J023016M03, full insert sequence),Os11g0443700 protein (Short chain alcohol dehydrogenase, putative) (Tropinone reductase, putative, expressed) (cDNA clone:002-140-G04, full insert sequence),Os11g0438700 protein (Tropinone reductase, putative, expressed) (cDNA clone:001-115-E03, full insert sequence),Os11g0438000 protein,Os04g0269100 protein,Os11g0654400 protein,Os11g0652900 protein Q0JEC9,Q7XNL8,B7EKL5,Q53KZ3,Q2R5F6,Q0ISZ5,A0A0N7KIR0,A0A0P0Y590,A0A0P0Y501 Q0JEC9_ORYSJ,Q7XNL8_ORYSJ,B7EKL5_ORYSJ,Q53KZ3_ORYSJ,Q2R5F6_ORYSJ,Q0ISZ5_ORYSJ,A0A0N7KIR0_ORYSJ,A0A0P0Y590_ORYSJ,A0A0P0Y501_ORYSJ Os04g0293300 Os04g0293300 OSNPB_040293300,OSJNBb0068N06.12 Os04g0293800 OsJ_14174 OSNPB_040293800,Os11g0438700 LOC_Os11g25170 OSNPB_110438700,LOC_Os11g25700 Os11g0443700 OsJ_13727 OSNPB_110443700,LOC_Os11g25170 Os11g0438700 OSNPB_110438700,Os11g0438000 OSNPB_110438000,Os04g0269100 OSNPB_040269100,Os11g0654400 OSNPB_110654400,Os11g0652900 OSNPB_110652900 ENOG411DQXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone acetyltransferase NA NA NA NA NA NA NA ENOG411DQXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription regulatory region sequence-specific DNA binding Homeobox-leucine zipper protein HOX22 (HD-ZIP protein HOX22) (Homeodomain transcription factor HOX22) (OsHox22),Os04g0541700 protein Q7XUJ5,A0A0P0WD29 HOX22_ORYSJ,A0A0P0WD29_ORYSJ HOX22 Os04g0541700 LOC_Os04g45810 OsJ_014981 OSJNBb0103I08.6,Os04g0541700 OSNPB_040541700 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DQXG UGT84A1,UGT84A4,UGT84A3,UGT84A2 Q5XF20,O23402,O23401,Q9LVF0 U84A1_ARATH,U84A4_ARATH,U84A3_ARATH,U84A2_ARATH UDP-glycosyltransferase 84A1 (EC 2.4.1.-) (Hydroxycinnamate glucosyltransferase 2) (AtHCAGT2) (EC 2.4.1.126),UDP-glycosyltransferase 84A4 (EC 2.4.1.-) (Hydroxycinnamate glucosyltransferase 1) (AtHCAGT1) (EC 2.4.1.126),UDP-glycosyltransferase 84A3 (EC 2.4.1.-) (Hydroxycinnamate glucosyltransferase 3) (AtHCAGT3) (EC 2.4.1.126),UDP-glycosyltransferase 84A2 (EC 2.4.1.-) (Sinapate 1-glucosyltransferase 1) (AtSGT1) (EC 2.4.1.120) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but reduced epidermal fluorescence due to reduced content of sinapoylmalate and hyper-fluorescence of trichomes due to accumulation of sinapic acid-derived polyketide. {ECO:0000269|PubMed:17217457}. Double mutants lacked hyper-fluorescent trichomes.,Levels of sinapoylmalate were reduced to 60-70% of those in wild-type leaves and the mutations had a similar impact on seed sinapoylcholine and sinapoylglucose content. The quantity and quality of lignin in mutant plants were unchanged relative to wild type.,Mutant display a red-fluorescence phenotype in primary leaves and hyper-fluorescent trichome phenotype in secondary leaves.,SGT activity in the extracts from mature mutant leaf tissues was less than 5% of that of the wild type.,Very low sinapic acid:UDP-glucose glucosyltransferase activity in the mutant leaves compared to that of wild type. Sinapoylmalate levels low in leaves and elevated in trichomes-C. Chapple-2007 FUNCTION: Glucosyltransferase that glucosylates 4-coumarate, ferulate, caffeate, sinapate and cinnamate. Can glucosylate the phytotoxic xenobiotic compound 2,4,5-trichlorophenol (TCP). {ECO:0000269|PubMed:11042211, ECO:0000269|PubMed:11187886, ECO:0000269|PubMed:12721858}.,FUNCTION: Glucosyltransferase that glucosylates sinapate, ferulate, 4-coumarate, cinnamate and caffeate. {ECO:0000269|PubMed:11187886}.,FUNCTION: Glucosyltransferase that glucosylates 4-coumarate, ferulate, cinnamate, sinapate and caffeate. {ECO:0000269|PubMed:11042211, ECO:0000269|PubMed:11187886}.,FUNCTION: Sinapate glucosyltransferase (SGT) required for the biosynthesis of the glucose ester sinapoylglucose and subsequently sinapoylmalate and sinapoylcholine. Is the major SGT activity in plant. Can glucosylate the phytotoxic xenobiotic compound 2,4,5-trichlorophenol (TCP). {ECO:0000269|PubMed:11042211, ECO:0000269|PubMed:11187886, ECO:0000269|PubMed:12721858, ECO:0000269|PubMed:17217457}. ARA:AT4G15480-MONOMER;,ARA:AT4G15500-MONOMER;,ARA:AT4G15490-MONOMER; 2.4.1.126;,2.4.1.120; 2.4.1.-; 2.4.1.126,2.4.1.-; 2.4.1.120 54481,53496,53913,55799 UDP-glycosyltransferase 84A1 (EC 2.4.1.-) (Hydroxycinnamate glucosyltransferase 2) (AtHCAGT2) (EC 2.4.1.126),UDP-glycosyltransferase 84A4 (EC 2.4.1.-) (Hydroxycinnamate glucosyltransferase 1) (AtHCAGT1) (EC 2.4.1.126),UDP-glycosyltransferase 84A3 (EC 2.4.1.-) (Hydroxycinnamate glucosyltransferase 3) (AtHCAGT3) (EC 2.4.1.126),UDP-glycosyltransferase 84A2 (EC 2.4.1.-) (Sinapate 1-glucosyltransferase 1) (AtSGT1) (EC 2.4.1.120) intracellular membrane-bounded organelle [GO:0043231]; daphnetin 4-O-beta-glucosyltransferase activity [GO:0102359]; esculetin 4-O-beta-glucosyltransferase activity [GO:0102361]; hydroxycinnamate 4-beta-glucosyltransferase activity [GO:0047218]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; sinapate 1-glucosyltransferase activity [GO:0050284]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152]; response to toxic substance [GO:0009636]; response to UV-B [GO:0010224],intracellular membrane-bounded organelle [GO:0043231]; daphnetin 4-O-beta-glucosyltransferase activity [GO:0102359]; esculetin 4-O-beta-glucosyltransferase activity [GO:0102361]; hydroxycinnamate 4-beta-glucosyltransferase activity [GO:0047218]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; sinapate 1-glucosyltransferase activity [GO:0050284]; metabolic process [GO:0008152],cytoplasm [GO:0005737]; intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; sinapate 1-glucosyltransferase activity [GO:0050284]; anthocyanin-containing compound biosynthetic process [GO:0009718]; cinnamic acid ester metabolic process [GO:0009801]; response to karrikin [GO:0080167]; response to toxic substance [GO:0009636] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaf veins and trichomes. {ECO:0000269|PubMed:17217457}. locus:2130205;,locus:2130225;,locus:2130215;,locus:2089880; AT4G15480,AT4G15500,AT4G15490,AT3G21560 cinnamate beta-D-glucosyltransferase-like Glycosyltransferase (EC 2.4.1.-) Q6ZHS1 Q6ZHS1_ORYSJ Os02g0188000 OJ1145_F01.11 OSNPB_020188000 ENOG411DQXQ O82178,A0A1P8AXP9,F4IJS7 PP186_ARATH,A0A1P8AXP9_ARATH,F4IJS7_ARATH Pentatricopeptide repeat-containing protein At2g35130,Tetratricopeptide repeat (TPR)-like superfamily protein 66734,66422,69546 Pentatricopeptide repeat-containing protein At2g35130,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2063449; AT2G35130 Pentatricopeptide repeat-containing protein Os02g0170000 protein,Os02g0170000 protein (Fragment) A0A0N7KES0,A0A0P0VFJ3 A0A0N7KES0_ORYSJ,A0A0P0VFJ3_ORYSJ Os02g0170000 OSNPB_020170000 ENOG411DQXP MPT3,MPT2 Q9FMU6,Q9M2Z8 MPCP3_ARATH,MPCP2_ARATH Mitochondrial phosphate carrier protein 3, mitochondrial (Mitochondrial phosphate transporter 3) (MPT3) (Phosphate transporter 3;1),Mitochondrial phosphate carrier protein 2, mitochondrial (Mitochondrial phosphate transporter 2) (MPT2) (Phosphate transporter 3;2) FUNCTION: Transport of phosphate groups from the cytosol to the mitochondrial matrix. Mediates salt stress tolerance through an ATP-dependent pathway and via modulation of the gibberellin metabolism. {ECO:0000269|PubMed:14756774, ECO:0000269|PubMed:22937061}. MISCELLANEOUS: Plants overexpressing MPT3/PHT3;1 display increased sensitivity to salt stress. {ECO:0000305|PubMed:22937061}.,MISCELLANEOUS: Plants overexpressing MPT2/PHT3;2 display increased sensitivity to salt stress. {ECO:0000305|PubMed:22937061}. 40090,39024 Mitochondrial phosphate carrier protein 3, mitochondrial (Mitochondrial phosphate transporter 3) (MPT3) (Phosphate transporter 3;1),Mitochondrial phosphate carrier protein 2, mitochondrial (Mitochondrial phosphate transporter 2) (MPT2) (Phosphate transporter 3;2) cell wall [GO:0005618]; chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; phosphate ion transmembrane transporter activity [GO:0015114]; mitochondrial transport [GO:0006839]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; phosphate ion transmembrane transporter activity [GO:0015114]; mitochondrial transport [GO:0006839]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in stems, leaves and flowers. Strong expression in vascular tissues. {ECO:0000269|PubMed:22937061}.,TISSUE SPECIFICITY: Expressed in leaves. Strong expression in senescent leaves. {ECO:0000269|PubMed:22937061}. locus:2174688;,locus:2099413; AT5G14040,AT3G48850 Phosphate carrier protein Os06g0210500 protein (Putative mitochondrial phosphate transporter),OSJNBa0064H22.14 protein (Os04g0448800 protein) (cDNA clone:J023012A09, full insert sequence),Mitochondrial phosphate transporter (Os02g0767500 protein) Q69TX3,Q7XV24,O80414 Q69TX3_ORYSJ,Q7XV24_ORYSJ,O80414_ORYSJ Os06g0210500 OSNPB_060210500 P0021C04.12,Os04g0448800 Os04g0448800 OSJNBa0064H22.14 OSNPB_040448800,Os02g0767500 Os02g0767500 OJ1004_A11.29 OsJ_08512 OSNPB_020767500 ENOG411DQXR NLP7 Q84TH9,A0A1P8B4J4 NLP7_ARATH,A0A1P8B4J4_ARATH Protein NLP7 (AtNLP7) (NIN-like protein 7) (Nodule inception protein-like protein 7),NIN like protein 7 DISRUPTION PHENOTYPE: N-starvation phenotype. Smaller rosette, but no effects on roots. Delayed growth and flowering when grown in greenhouse. Increased drought resistance. {ECO:0000269|PubMed:18826430}. Small rosette; Delayed growth; Late flowering; Resistant to drought-A. Krapp-2009 FUNCTION: Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. 105742,74582 Protein NLP7 (AtNLP7) (NIN-like protein 7) (Nodule inception protein-like protein 7),NIN like protein 7 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; nitrate assimilation [GO:0042128]; response to nitrate [GO:0010167]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. locus:2134941; AT4G24020 transcription DNA-dependent Protein NLP3 (AtNLP3) (NIN-like protein 3) (Nodule inception protein-like protein 3),Os01g0236700 protein (Fragment) Q5NB82,A0A0N7KCM5 NLP3_ORYSJ,A0A0N7KCM5_ORYSJ NLP3 Os01g0236700 LOC_Os01g13540 OsJ_01032 P0708G02.34,Os01g0236700 OSNPB_010236700 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DQXT ORP4C,ORP4B,ORP4A Q9LVD4,Q9SW00,Q9SVZ9,A0A1P8B9E6,A0A1P8B978,A0A1P8B646,F4JTE8 ORP4C_ARATH,ORP4B_ARATH,ORP4A_ARATH,A0A1P8B9E6_ARATH,A0A1P8B978_ARATH,A0A1P8B646_ARATH,F4JTE8_ARATH Oxysterol-binding protein-related protein 4C (OSBP-related protein 4C),Oxysterol-binding protein-related protein 4B (OSBP-related protein 4B),Oxysterol-binding protein-related protein 4A (OSBP-related protein 4A),OSBP(Oxysterol binding protein)-related protein 4C,OSBP(Oxysterol binding protein)-related protein 4A,OSBP(Oxysterol binding protein)-related protein 4B FUNCTION: May be involved in the transport of sterols. {ECO:0000250}. R-ATH-1482801;R-ATH-192105; 42968,43674,44072,45772,43354,30649,55385 Oxysterol-binding protein-related protein 4C (OSBP-related protein 4C),Oxysterol-binding protein-related protein 4B (OSBP-related protein 4B),Oxysterol-binding protein-related protein 4A (OSBP-related protein 4A),OSBP(Oxysterol binding protein)-related protein 4C,OSBP(Oxysterol binding protein)-related protein 4A,OSBP(Oxysterol binding protein)-related protein 4B lipid binding [GO:0008289]; lipid transport [GO:0006869] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:16897474}.,TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:16897474}.,TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:16897474}. locus:2165575;,locus:2117522;,locus:2117532; AT5G57240,AT4G25850,AT4G25860 protein)-related protein Os08g0517700 protein (Oxysterol-binding protein-like),Os08g0517700 protein (Oxysterol-binding protein-like) (cDNA clone:J023078B20, full insert sequence) Q84Z91,Q7EZA3 Q84Z91_ORYSJ,Q7EZA3_ORYSJ P0700D12.114-1 Os08g0517700 OsJ_27939 OSNPB_080517700,P0700D12.114-2 Os08g0517700 OSNPB_080517700 ENOG411DQX8 FLK Q9SR13,A0A1I9LM90 FLK_ARATH,A0A1I9LM90_ARATH Flowering locus K homology domain (Flowering locus KH domain),RNA-binding KH domain-containing protein DISRUPTION PHENOTYPE: Delayed flowering without a significant effect on the photoperiodic or vernalization responses (PubMed:14593172). The late-flowering phenotype in flk-2 is rescued by the disruption of PEP (pep-2, pep-4) (PubMed:19576878). {ECO:0000269|PubMed:14593172, ECO:0000269|PubMed:19576878}. FUNCTION: Regulates positively flowering by repressing FLC expression and post-transcriptional modification. {ECO:0000269|PubMed:14593172, ECO:0000269|PubMed:19576878}. 63404,60578 Flowering locus K homology domain (Flowering locus KH domain),RNA-binding KH domain-containing protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; positive regulation of flower development [GO:0009911]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],RNA binding [GO:0003723] locus:2084908; AT3G04610 poly(rC)-binding protein KH domain containing protein, expressed (Os03g0627500 protein) (Putative RNA binding protein) (cDNA clone:J013114H09, full insert sequence),Os12g0597600 protein Q10GH8,A0A0P0YCA1 Q10GH8_ORYSJ,A0A0P0YCA1_ORYSJ Os03g0627500 LOC_Os03g42900 OsJ_11804 OSJNBb0013K08.4 OSNPB_030627500,Os12g0597600 OSNPB_120597600 ENOG411DQX5 A0A1P8AVJ3,A0A1P8AVE9,F4IDR3 A0A1P8AVJ3_ARATH,A0A1P8AVE9_ARATH,F4IDR3_ARATH p-loop containing nucleoside triphosphate hydrolases superfamily protein R-ATH-6791226; 105419,134431,131185 p-loop containing nucleoside triphosphate hydrolases superfamily protein nucleus [GO:0005634]; hydrolase activity [GO:0016787]; ribosome biogenesis [GO:0042254],90S preribosome [GO:0030686]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; U3 snoRNA binding [GO:0034511]; endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000479]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2033050; AT1G06720 Ribosome biogenesis protein BMS1 Os03g0333100 protein,Os03g0333100 protein (Fragment) Q0DS53,A0A0P0VX43 Q0DS53_ORYSJ,A0A0P0VX43_ORYSJ Os03g0333100 OSNPB_030333100 ENOG411DQX4 Q9SF78,A0A1P8ATX6 GDL29_ARATH,A0A1P8ATX6_ARATH GDSL esterase/lipase At1g71691 (EC 3.1.1.-) (Extracellular lipase At1g71691),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT1G71691-MONOMER; 3.1.1.- 41725,33681 GDSL esterase/lipase At1g71691 (EC 3.1.1.-) (Extracellular lipase At1g71691),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2824531; AT1G71691 GDSL esterase lipase Os05g0419800 protein (cDNA clone:J023140K23, full insert sequence),Os08g0112900 protein (Putative GDSL-motif lipase/hydrolase protein) Q60DV9,Q6ZCC3 Q60DV9_ORYSJ,Q6ZCC3_ORYSJ Os05g0419800 Os05g0419800 OSNPB_050419800 P0426G01.13,Os08g0112900 Os08g0112900 OsJ_25801 OSNPB_080112900 P0498H04.26 ENOG411DQX6 ''cytochrome P450,CYP706A6 Q9STI1,Q66GJ1,Q9STI0 Q9STI1_ARATH,Q66GJ1_ARATH,Q9STI0_ARATH Cytochrome P450, family 706, subfamily A, polypeptide 4 (Flavonoid 3', 5'-hydroxylase-like protein) (Putative cytochrome p450) (Putative flavonoid 3',5'-hydroxylase),At4g12320 (Cytochrome P450, family 706, subfamily A, polypeptide 6),At4g12310 (Cytochrome P450, family 706, subfamily A, polypeptide 5) (Flavonoid 3', 5'-hydroxylase-like protein) (Flavonoid 3',5'-hydroxylase-like protein) ARA:AT4G12300-MONOMER;,ARA:AT4G12320-MONOMER;,ARA:AT4G12310-MONOMER; 58659,59029,59046 Cytochrome P450, family 706, subfamily A, polypeptide 4 (Flavonoid 3', 5'-hydroxylase-like protein) (Putative cytochrome p450) (Putative flavonoid 3',5'-hydroxylase),At4g12320 (Cytochrome P450, family 706, subfamily A, polypeptide 6),At4g12310 (Cytochrome P450, family 706, subfamily A, polypeptide 5) (Flavonoid 3', 5'-hydroxylase-like protein) (Flavonoid 3',5'-hydroxylase-like protein) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2139084;,locus:2139114;,locus:2139099; AT4G12300,AT4G12320,AT4G12310 cytochrome P450 Os08g0547900 protein (Putative P450 monooxygenase),Os01g0700500 protein (Fragment) Q6YSZ6,A0A0N7KDK7,A0A0P0V703 Q6YSZ6_ORYSJ,A0A0N7KDK7_ORYSJ,A0A0P0V703_ORYSJ Os08g0547900 OJ1112_E06.9 OSNPB_080547900 P0544G09.25,Os01g0700500 OSNPB_010700500 ENOG411EKG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thiamine pyrophosphate enzyme N-terminal TPP binding domain NA NA NA NA NA NA NA ENOG411DWVE Q94K97 Q94K97_ARATH 30S ribosomal protein (Uncharacterized protein At5g24490) 34857 30S ribosomal protein (Uncharacterized protein At5g24490) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; cytosolic small ribosomal subunit [GO:0022627]; ribosomal small subunit binding [GO:0043024]; ribosome binding [GO:0043022]; negative regulation of translational elongation [GO:0045900]; primary metabolic process [GO:0044238] locus:2184017; AT5G24490 ribosomal protein Os03g0856500 protein (Plastid-specific 30S ribosomal protein 1, chloroplast, putative, expressed) (Putative ribosomal protein) (cDNA clone:001-038-C09, full insert sequence) (cDNA clone:006-307-E04, full insert sequence) Q84M68 Q84M68_ORYSJ LOC_Os03g63950 Os03g0856500 OSJNBa0059G06.24 OSJNBb0062G19.14 OSNPB_030856500 ENOG411DWVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA Os02g0220400 protein (Zinc finger protein-like) (cDNA clone:J013048G01, full insert sequence) Q6YW48 Q6YW48_ORYSJ Os02g0220400 B1131G07.8 OSNPB_020220400 ENOG411DWVG MORF2 O22793 MORF2_ARATH Multiple organellar RNA editing factor 2, chloroplastic (Protein DIFFERENTIATION AND GREENING-like 1) (Protein DAG-like 1) (RNA editing-interacting protein 2) DISRUPTION PHENOTYPE: Small plants with white leaves that do not contain chlorophyll. Mutant plants are unable to grow autotrophically on soil and flowers are sterile. {ECO:0000269|PubMed:12678554, ECO:0000269|PubMed:22411807}. Growth on sucrose: Yellow leaves. Small plants. Sterile flowers. Lacks palisadic cell layer. Small plastids. Missing stacked grana structures.. Structurally aberant nucleoids. Seedling lethal without exogenous sucrose; Pale green embryos and seedlings-R. Mache-2003 FUNCTION: Involved in plastid rRNA processing and consequently in translation and early chloroplast differentiation (PubMed:12678554). Involved in organellar RNA editing. Required for the processing of multiple editing sites in plastids (PubMed:22411807, PubMed:23818871). {ECO:0000269|PubMed:12678554, ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. 24715 Multiple organellar RNA editing factor 2, chloroplastic (Protein DIFFERENTIATION AND GREENING-like 1) (Protein DAG-like 1) (RNA editing-interacting protein 2) chloroplast [GO:0009507]; endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) [GO:0002103]; mRNA processing [GO:0006397]; plastid organization [GO:0009657] locus:2051003; AT2G33430 DAG protein Os06g0116600 protein (Putative DAL1 protein),Os04g0601800 protein (Fragment) Q5VRK8,Q0JAF6 Q5VRK8_ORYSJ,Q0JAF6_ORYSJ Os06g0116600 OsJ_19911 OSJNBa0019F11.29-1 OSNPB_060116600,Os04g0601800 Os04g0601800 OSNPB_040601800 ENOG411DWVF A0A1P8AX27,Q0WMJ4,A0A1P8AX50,A8MRR2 A0A1P8AX27_ARATH,Q0WMJ4_ARATH,A0A1P8AX50_ARATH,A8MRR2_ARATH AAA-type ATPase family protein,AAA-type ATPase family protein (Uncharacterized protein At2g45500) 39099,53944,55158,54387 AAA-type ATPase family protein,AAA-type ATPase family protein (Uncharacterized protein At2g45500) ATP binding [GO:0005524],nucleus [GO:0005634]; ATP binding [GO:0005524] locus:2043619; AT2G45500 MIT (microtubule interacting and transport) domain Os06g0130000 protein (Putative spastin protein orthologue) (Putative spastin-like protein) (cDNA clone:001-131-A02, full insert sequence) (cDNA clone:J023044D08, full insert sequence),Os06g0130000 protein (Fragment) Q658G8,A0A0N7KLG7 Q658G8_ORYSJ,A0A0N7KLG7_ORYSJ P0538C01.26-1 Os06g0130000 OSNPB_060130000,Os06g0130000 OSNPB_060130000 ENOG411DWVA Q0WPW8,A0A1P8AXF1 Q0WPW8_ARATH,A0A1P8AXF1_ARATH At2g24350 (Putative poly(A) binding protein) (RNA binding (RRM/RBD/RNP motifs) family protein),RNA binding (RRM/RBD/RNP motifs) family protein 60797,46380 At2g24350 (Putative poly(A) binding protein) (RNA binding (RRM/RBD/RNP motifs) family protein),RNA binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2061077; AT2G24350 Inherit from KOG: zinc finger CCCH-type containing 14 OSJNBa0023J03.10 protein (Os04g0306800 protein) (cDNA clone:J013112L20, full insert sequence),Os04g0306800 protein (Fragment) Q7XVN8,A0A0P0W8C0 Q7XVN8_ORYSJ,A0A0P0W8C0_ORYSJ Os04g0306800 OsJ_14219 OSJNBa0023J03.10 OSNPB_040306800,Os04g0306800 OSNPB_040306800 ENOG411DWVC PER3,PER30,PER39 O23044,Q9LSY7,Q9SUT2 PER3_ARATH,PER30_ARATH,PER39_ARATH Peroxidase 3 (Atperox P3) (EC 1.11.1.7) (ATPRC) (RCI3A) (Rare cold-inducible protein),Peroxidase 30 (Atperox P30) (EC 1.11.1.7) (ATP7a) (PRXR9),Peroxidase 39 (Atperox P39) (EC 1.11.1.7) (ATP19a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G05260-MONOMER;,ARA:AT3G21770-MONOMER;,ARA:AT4G11290-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34906,35788,35601 Peroxidase 3 (Atperox P3) (EC 1.11.1.7) (ATPRC) (RCI3A) (Rare cold-inducible protein),Peroxidase 30 (Atperox P30) (EC 1.11.1.7) (ATP7a) (PRXR9),Peroxidase 39 (Atperox P39) (EC 1.11.1.7) (ATP19a) endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; hyperosmotic salinity response [GO:0042538]; plant-type cell wall organization [GO:0009664]; response to cold [GO:0009409]; response to desiccation [GO:0009269]; response to oxidative stress [GO:0006979],cell wall [GO:0005618]; cytoplasm [GO:0005737]; extracellular region [GO:0005576]; nucleus [GO:0005634]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in root cells.,TISSUE SPECIFICITY: Mainly expressed in roots. {ECO:0000269|PubMed:9807821, ECO:0000269|Ref.9}.,TISSUE SPECIFICITY: Slightly expressed in roots. locus:2207210;,locus:2093099;,locus:2128308; AT1G05260,AT3G21770,AT4G11290 peroxidase Peroxidase (EC 1.11.1.7),Os06g0681600 protein Q653X4,A0A0P0X0C8 Q653X4_ORYSJ,A0A0P0X0C8_ORYSJ P0547F09.20-1 Os06g0681600 OSNPB_060681600,Os06g0681600 OSNPB_060681600 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DWVB Q8GXN3,O81876 Q8GXN3_ARATH,O81876_ARATH Transmembrane protein (Uncharacterized protein At4g33600/T16L1_90),Transmembrane protein (Uncharacterized protein AT4g33590) (Uncharacterized protein T16L1.80) 54625,53537 Transmembrane protein (Uncharacterized protein At4g33600/T16L1_90),Transmembrane protein (Uncharacterized protein AT4g33590) (Uncharacterized protein T16L1.80) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2134248;,locus:2134233; AT4G33600,AT4G33590 NA Os09g0466800 protein (cDNA clone:J033052A16, full insert sequence) Q6YXH2 Q6YXH2_ORYSJ Os09g0466800 Os09g0466800 OJ1005_D12.35 OSNPB_090466800 ENOG411DWVM Q6NLZ3,Q6DBN0,F4IFS4,A0A1P8AY92 Q6NLZ3_ARATH,Q6DBN0_ARATH,F4IFS4_ARATH,A0A1P8AY92_ARATH At2g27340 (N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein) (mRNA, clone: RAFL25-24-C16),At3g58130 (N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein),N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein ARA:GQT-2123-MONOMER;,ARA:GQT-2113-MONOMER; R-ATH-162710; 29816,29165,20903,25301 At2g27340 (N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein) (mRNA, clone: RAFL25-24-C16),At3g58130 (N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein),N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein locus:2038608;,locus:2085440; AT2G27340,AT3G58130 N-acetylglucosaminyl-phosphatidylinositol OSJNBb0017I01.2 protein (Os04g0678800 protein) (cDNA clone:J013161A01, full insert sequence) (cDNA clone:J013164P16, full insert sequence) Q7XKF2 Q7XKF2_ORYSJ Os04g0678800 OsJ_16635 OSJNBb0017I01.2 OSNPB_040678800 ENOG411DWVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chalcone and stilbene synthases N-terminal domain NA NA NA NA NA NA NA ENOG411DWVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter Os08g0153000 protein A0A0P0XC49 A0A0P0XC49_ORYSJ Os08g0153000 OSNPB_080153000 ENOG411DWVH B3LF45,A0A1P8B899 B3LF45_ARATH,A0A1P8B899_ARATH AT4G35880 protein (At4g35880) (Eukaryotic aspartyl protease family protein),Eukaryotic aspartyl protease family protein 58047,48772 AT4G35880 protein (At4g35880) (Eukaryotic aspartyl protease family protein),Eukaryotic aspartyl protease family protein anchored component of membrane [GO:0031225]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190] locus:2125324; AT4G35880 aspartic proteinase-like protein Os09g0542100 protein (Fragment),OSJNBb0071D01.4 protein (Os04g0228000 protein) (cDNA clone:001-017-A07, full insert sequence) Q0IZY2,Q7X5X8 Q0IZY2_ORYSJ,Q7X5X8_ORYSJ Os09g0542100 OSNPB_090542100,Os04g0228000 OsJ_13479 OSJNBb0071D01.4 OSNPB_040228000 ENOG411DWVK F4I9Q5,Q9C6G0 DEXH7_ARATH,DEXH4_ARATH DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (EC 3.6.4.13),DExH-box ATP-dependent RNA helicase DExH4, chloroplastic (EC 3.6.4.13) 3.6.4.13 163600,159339 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (EC 3.6.4.13),DExH-box ATP-dependent RNA helicase DExH4, chloroplastic (EC 3.6.4.13) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2196265;,locus:2196255; AT1G58060,AT1G58050 helicase Os04g0432250 protein A0A0N7KJ30 A0A0N7KJ30_ORYSJ Os04g0432250 OSNPB_040432250 ENOG411DWVJ Q8VXW7,A0A1I9LNB6 Q8VXW7_ARATH,A0A1I9LNB6_ARATH ELMO/CED-12 family protein (Uncharacterized protein At3g03610),ELMO/CED-12 family protein 37433,38910 ELMO/CED-12 family protein (Uncharacterized protein At3g03610),ELMO/CED-12 family protein locus:2096389; AT3G03610 ELMO domain-containing protein Os03g0322800 protein (Phagocytosis and cell motility protein ELMO1, putative, expressed) (cDNA clone:J033067D09, full insert sequence),Os03g0322800 protein (Fragment) Q10M53,A0A0P0VWV9 Q10M53_ORYSJ,A0A0P0VWV9_ORYSJ LOC_Os03g20670 Os03g0322800 OSNPB_030322800,Os03g0322800 OSNPB_030322800 ENOG411DWVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os02g0550900 protein (Fragment) A0A0P0VK79,A0A0P0VK95 A0A0P0VK79_ORYSJ,A0A0P0VK95_ORYSJ Os02g0550900 OSNPB_020550900 ENOG411DWVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF827 Os05g0476100 protein (cDNA clone:J033099E14, full insert sequence) Q0DHC5 Q0DHC5_ORYSJ Os05g0476100 Os05g0476100 OsJ_18913 OSNPB_050476100 ENOG411DWVW NUDT3 Q8L831 NUDT3_ARATH Nudix hydrolase 3 (AtNUDT3) (EC 3.6.1.-) FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}. 3.6.1.- 86857 Nudix hydrolase 3 (AtNUDT3) (EC 3.6.1.-) cytosol [GO:0005829]; vacuole [GO:0005773]; dipeptidyl-peptidase activity [GO:0008239]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems and, at lower level, leaves. {ECO:0000269|PubMed:15878881}. locus:2019848; AT1G79690 Nudix hydrolase MutT/nudix protein-like (Os02g0793300 protein) Q6K683 Q6K683_ORYSJ Os02g0793300 OJ1249_F12.31 OSNPB_020793300 P0700F06.19 ENOG411DWVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase OSJNBa0004B13.17 protein (Os01g0284300 protein) (Putative MAPKK) Q9AQV3 Q9AQV3_ORYSJ Os01g0284300 OSJNBa0004B13.17 OSNPB_010284300 P0498A12.9 P0581F09.30 ENOG411DWVQ Q9ZVE0,B9DGF1 ORN_ARATH,B9DGF1_ARATH Oligoribonuclease (EC 3.1.-.-),AT2G26970 protein (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) FUNCTION: 3'-to-5' exoribonuclease specific for small oligoribonucleotides. {ECO:0000250}. 3.1.-.- 24932,24489 Oligoribonuclease (EC 3.1.-.-),AT2G26970 protein (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) mitochondrion [GO:0005739]; 3'-5'-exoribonuclease activity [GO:0000175]; nucleic acid binding [GO:0003676]; nucleic acid phosphodiester bond hydrolysis [GO:0090305],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2059263; AT2G26970 K13288 oligoribonuclease EC 3.1 Os02g0465500 protein (Putative oligoribonuclease) (cDNA clone:J023054H24, full insert sequence) Q6K4V8 Q6K4V8_ORYSJ Os02g0465500 OJ1342_D02.2 OSJNBa0035A24.52 OSNPB_020465500 ENOG411DWVP PCMP-H81 Q7Y211 PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 84) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19934379}. FUNCTION: Involved in RNA editing events in chloroplasts. Required for the editing of a single site in ndhB and ndhF transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Required for the editing of a single site in psbZ. Required for optimal activity of the NDH complex of the photosynthetic electron transport chain. {ECO:0000269|PubMed:19934379}. 99276 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 84) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA processing [GO:0031425]; mRNA processing [GO:0006397]; RNA modification [GO:0009451] locus:2103483; AT3G57430 Pentatricopeptide repeat-containing protein Os04g0118700 protein B9FD40 B9FD40_ORYSJ Os04g0118700 OsJ_13579 OSNPB_040118700 ENOG411DWVS Q9LTI0,A0A1R7T3A3 Q9LTI0_ARATH,A0A1R7T3A3_ARATH Protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase (Uncharacterized protein At5g59500),Protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase 45793,34577 Protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase (Uncharacterized protein At5g59500),Protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2148373; AT5G59500 Inherit from KOG: carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411DWVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif family protein expressed Os01g0190500 protein,Os01g0862500 protein (cDNA clone:002-186-C01, full insert sequence),Os05g0187500 protein Q9LG84,Q94CW3,Q75KY5 Q9LG84_ORYSJ,Q94CW3_ORYSJ,Q75KY5_ORYSJ Os01g0190500 OsJ_00700 OSNPB_010190500 P0710E05.21,Os01g0862500 OSNPB_010862500 P0423B08.11 P0679C12.52,Os05g0187500 Os05g0187500 OJ1097_A12.6 OSNPB_050187500 ENOG411DWVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sucrose-6F-phosphate phosphohydrolase Probable sucrose-phosphate synthase 3 (EC 2.4.1.14) (Sucrose phosphate synthase 3F) (OsSPS3F) (UDP-glucose-fructose-phosphate glucosyltransferase),Os06g0643800 protein (Fragment) Q67WN8,A0A0P0WZF8 SPSA3_ORYSJ,A0A0P0WZF8_ORYSJ SPS3 SPS6 Os06g0643800 LOC_Os06g43630 P0017B12.4 P0416A11.37,Os06g0643800 OSNPB_060643800 FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation (By similarity). {ECO:0000250}. ENOG411DWVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWVZ Q9FII2,Q9FII1 FK117_ARATH,FK118_ARATH F-box/kelch-repeat protein At5g42350,F-box/kelch-repeat protein At5g42360 64726,64851 F-box/kelch-repeat protein At5g42350,F-box/kelch-repeat protein At5g42360 Cul3-RING ubiquitin ligase complex [GO:0031463]; SCF ubiquitin ligase complex [GO:0019005]; protein ubiquitination [GO:0016567]; regulation of cell growth [GO:0001558]; regulation of cell size [GO:0008361],Cul3-RING ubiquitin ligase complex [GO:0031463]; protein ubiquitination [GO:0016567] locus:2162286;,locus:2162301; AT5G42350,AT5G42360 F-box kelch-repeat protein Os09g0555300 protein Q0IZR1 Q0IZR1_ORYSJ Os09g0555300 Os09g0555300 OSNPB_090555300 ENOG411DWV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Voltage gated chloride channel Chloride channel protein,Os04g0644800 protein (Fragment) Q6ZDC2,A0A0P0WFJ7 Q6ZDC2_ORYSJ,A0A0P0WFJ7_ORYSJ P0045D08.120 Os08g0300300 OsJ_26819 OSJNBa0070J19.7 OSJNBa0096K16.2 OSNPB_080300300,Os04g0644800 OSNPB_040644800 ENOG411DWV4 F4JV28,F4JV27 F4JV28_ARATH,F4JV27_ARATH Enhancer of polycomb-like transcription factor protein 173361,173432 Enhancer of polycomb-like transcription factor protein chromatin [GO:0000785]; nucleus [GO:0005634]; DNA repair [GO:0006281]; mitotic sister chromatid cohesion [GO:0007064] locus:2125682; AT4G32620 Enhancer of polycomb-like Os01g0179500 protein Q5VRT7 Q5VRT7_ORYSJ Os01g0179500 OSNPB_010179500 P0406H10.21 ENOG411DWV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA24 (Indoleacetic acid-induced protein 24) Q6ZL57 IAA24_ORYSJ IAA24 Os07g0182400 LOC_Os07g08460 OJ1506_G02.8 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411DWV6 F4F15.170 Q9C581,Q9SUZ8 Q9C581_ARATH,Q9SUZ8_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At5g22070) (Uncharacterized protein At5g22070/T6G21_180),At3g52060 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Uncharacterized protein At3g52060) (Uncharacterized protein F4F15.170) 41636,39517 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At5g22070) (Uncharacterized protein At5g22070/T6G21_180),At3g52060 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Uncharacterized protein At3g52060) (Uncharacterized protein F4F15.170) membrane [GO:0016020]; plasmodesma [GO:0009506]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:504956440;,locus:2083795; AT5G22070,AT3G52060 Core-2/I-Branching enzyme Expressed protein (Os12g0618800 protein) (cDNA, clone: J100060F06, full insert sequence),Expressed protein (Os03g0648100 protein) (cDNA clone:006-201-B01, full insert sequence) Q2QM36,Q60DJ5 Q2QM36_ORYSJ,Q60DJ5_ORYSJ LOC_Os12g42420 Os12g0618800 OsJ_36896 OSNPB_120618800,Os03g0648100 LOC_Os03g44580 Os03g0648100 OSNPB_030648100 ENOG411DWV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0159200 protein (Putative GDSL lipase/acylhydrolase) Q5W722 Q5W722_ORYSJ Os05g0159200 Os05g0159200 OSJNBa0017J22.8 OSNPB_050159200 ENOG411DWV0 HISN1A,HISN1B Q9S762,Q8GSJ1 HIS1A_ARATH,HIS1B_ARATH ATP phosphoribosyltransferase 1, chloroplastic (ATP-PRTase 1) (AtATP-PRT1) (EC 2.4.2.17),ATP phosphoribosyltransferase 2, chloroplastic (ATP-PRTase 2) (AtATP-PRT2) (EC 2.4.2.17) FUNCTION: Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/9. MetaCyc:AT1G58080-MONOMER;,MetaCyc:AT1G09795-MONOMER; 2.4.2.17; Biosynthesis of secondary metabolites (01110),Histidine metabolism (00340),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 2.4.2.17 44556,44756 ATP phosphoribosyltransferase 1, chloroplastic (ATP-PRTase 1) (AtATP-PRT1) (EC 2.4.2.17),ATP phosphoribosyltransferase 2, chloroplastic (ATP-PRTase 2) (AtATP-PRT2) (EC 2.4.2.17) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP phosphoribosyltransferase activity [GO:0003879]; magnesium ion binding [GO:0000287]; histidine biosynthetic process [GO:0000105] TISSUE SPECIFICITY: Expressed in leaves and at lower levels in roots (at protein level). {ECO:0000269|PubMed:10712555}. locus:2196287;,locus:505006113; AT1G58080,AT1G09795 ATP phosphoribosyl transferase ATP phosphoribosyltransferase, chloroplastic (ATP-PRTase) (AtATP-PRT) (EC 2.4.2.17) Q10S55 HIS1_ORYSJ Os03g0134300 LOC_Os03g04169 OJ1006F06.12 OJ1006F06.14 FUNCTION: Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). {ECO:0000250}. ENOG411DWV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sodium Bile acid symporter family Os12g0170300 protein (Fragment) A0A0N7KTM9 A0A0N7KTM9_ORYSJ Os12g0170300 OSNPB_120170300 ENOG411DWV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWV9 Q93ZX4 Q93ZX4_ARATH CwfJ-like family protein (Uncharacterized protein At1g56290) 79196 CwfJ-like family protein (Uncharacterized protein At1g56290) catalytic activity [GO:0003824] locus:2011851; AT1G56290 CWF19-like protein 2-like Os03g0740700 protein Q0DNQ5 Q0DNQ5_ORYSJ Os03g0740700 OSNPB_030740700 ENOG411DWV8 PRMT3 Q0WVD6 ANM3_ARATH Probable protein arginine N-methyltransferase 3 (EC 2.1.1.-) FUNCTION: Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}. 2.1.1.- 67344 Probable protein arginine N-methyltransferase 3 (EC 2.1.1.-) cytosol [GO:0005829]; histone-arginine N-methyltransferase activity [GO:0008469]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; regulation of transcription, DNA-templated [GO:0006355] locus:2082244; AT3G12270 Protein arginine n-methyltransferase Probable protein arginine N-methyltransferase 3 (EC 2.1.1.-),Os07g0640000 protein (Fragment) A3BMN9,A0A0N7KNX7 ANM3_ORYSJ,A0A0N7KNX7_ORYSJ PRMT3 Os07g0640000 LOC_Os07g44640 OJ1340_C08.133 OsJ_024311,Os07g0640000 OSNPB_070640000 FUNCTION: Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}. ENOG411E5XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhodanese-like domain Os12g0428000 protein (Rhodanese-like domain containing protein, expressed) (cDNA clone:001-115-C02, full insert sequence) (cDNA clone:J023056E18, full insert sequence) Q2QSI2 Q2QSI2_ORYSJ Os12g0428000 LOC_Os12g24020 OsJ_35921 OSNPB_120428000 ENOG411DTMS MXE10.1 F4K425 F4K425_ARATH Plasma-membrane choline transporter family protein 63812 Plasma-membrane choline transporter family protein integral component of membrane [GO:0016021] locus:2177110; AT5G13760 Plasma-membrane choline transporter Os07g0656100 protein A0A0P0X9L3 A0A0P0X9L3_ORYSJ Os07g0656100 OSNPB_070656100 ENOG411EA81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTM9 C0LGK9 Y2242_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g24230 (EC 2.7.11.1) 2.7.11.1 94117 Probable LRR receptor-like serine/threonine-protein kinase At2g24230 (EC 2.7.11.1) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2047530; AT2G24230 LRR receptor-like serine threonine-protein kinase Os08g0276400 protein (Putative brassinosteroid insensitive 1) (cDNA clone:J033083N01, full insert sequence) Q6ZG00 Q6ZG00_ORYSJ Os08g0276400 Os08g0276400 OJ1118_F05.16 OsJ_26706 OSNPB_080276400 ENOG411E4DI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os02g0198100 protein A0A0P0VFX0 A0A0P0VFX0_ORYSJ Os02g0198100 OSNPB_020198100 ENOG411EA8Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411DX3D TEL3N.1 A0A1P8BGZ9,Q5XVC4,F4K9T9,F4K9U0 A0A1P8BGZ9_ARATH,Q5XVC4_ARATH,F4K9T9_ARATH,F4K9U0_ARATH TPX2 (Targeting protein for Xklp2) protein family 51429,56173,56482,58697 TPX2 (Targeting protein for Xklp2) protein family microtubule [GO:0005874]; spindle [GO:0005819]; activation of protein kinase activity [GO:0032147]; regulation of mitotic spindle organization [GO:0060236] locus:2831117;,locus:2180897; AT3G01015,AT5G15510 Targeting protein for Xklp2 (TPX2) Os03g0212600 protein (Targeting protein for Xklp2 containing protein, expressed) Q10Q23 Q10Q23_ORYSJ Os03g0212600 LOC_Os03g11400 Os03g0212600 OSNPB_030212600 ENOG411DX3S Fes1C,Fes1A Q9LZL7,Q84J81,A8MQ87,F4KAZ8 Q9LZL7_ARATH,Q84J81_ARATH,A8MQ87_ARATH,F4KAZ8_ARATH Fes1C (Uncharacterized protein At5g02150) (Uncharacterized protein At5g02150/T7H20_200) (Uncharacterized protein T7H20_200),Fes1A (Uncharacterized protein At3g09350),Fes1A,Fes1C increased sensitivity to heat 36141,40396,36184,31695 Fes1C (Uncharacterized protein At5g02150) (Uncharacterized protein At5g02150/T7H20_200) (Uncharacterized protein T7H20_200),Fes1A (Uncharacterized protein At3g09350),Fes1A,Fes1C cytoplasm [GO:0005737]; nucleus [GO:0005634]; Hsp70 protein binding [GO:0030544]; response to heat [GO:0009408]; response to salt stress [GO:0009651] locus:2185113;,locus:2083559; AT5G02150,AT3G09350 hsp70-binding protein Armadillo/beta-catenin-like repeat family protein, expressed (Os03g0822700 protein) (Putative Hsp70 binding protein),Armadillo/beta-catenin-like repeat family protein, expressed (Os03g0822700 protein) (cDNA clone:001-037-A06, full insert sequence) Q852A6,Q10BD2 Q852A6_ORYSJ,Q10BD2_ORYSJ OSJNBb0081B07.19 LOC_Os03g60780 Os03g0822700 OsJ_13160 OSNPB_030822700,Os03g0822700 LOC_Os03g60780 OSNPB_030822700 ENOG411E25J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF593 Os08g0269000 protein B9G000 B9G000_ORYSJ Os08g0269000 OsJ_26679 OSNPB_080269000 ENOG411E25K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-binding dehydrogenase NADP-dependent oxidoreductase P1, putative, expressed (Os11g0255500 protein) (Oxidoreductase, zinc-binding dehydrogenase family),NADP-dependent oxidoreductase P1, putative, expressed (Os12g0225900 protein) (cDNA, clone: J100068F02, full insert sequence),Os12g0226400 protein (Fragment) Q53LC7,Q2QVK7,A0A0P0Y895 Q53LC7_ORYSJ,Q2QVK7_ORYSJ,A0A0P0Y895_ORYSJ LOC_Os11g14910 Os11g0255500 OsJ_33559 OSNPB_110255500,Os12g0225900 LOC_Os12g12470 OsJ_35613 OSNPB_120225900,Os12g0226400 OSNPB_120226400 ENOG411E25H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat OSJNBa0064G10.23 protein (Os04g0678300 protein) Q7FAN9 Q7FAN9_ORYSJ Os04g0678300 Os04g0678300 OsJ_16633 OSJNBa0064G10.23 OSNPB_040678300 ENOG411E25I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0753400 protein (cDNA, clone: J065002C06, full insert sequence) Q6ZGP4 Q6ZGP4_ORYSJ Os02g0753400 Os02g0753400 OJ1288_G09.22 OsJ_08416 OSNPB_020753400 ENOG411E25N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os08g0486300 protein A0A0P0XHA2 A0A0P0XHA2_ORYSJ Os08g0486300 OSNPB_080486300 ENOG411E25M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Purple acid phosphatase (EC 3.1.3.2),Os07g0111600 protein (Fragment) Q8H5T7,A0A0P0X1S7,A0A0P0X1N3 Q8H5T7_ORYSJ,A0A0P0X1S7_ORYSJ,A0A0P0X1N3_ORYSJ OJ1123_C12.123 Os07g0111600 OSNPB_070111600,Os07g0111600 OSNPB_070111600 ENOG411E25B BHLH71,bHLH071 Q56XR0,A0A1P8BF82 BH071_ARATH,A0A1P8BF82_ARATH Transcription factor bHLH71 (Basic helix-loop-helix protein 71) (AtbHLH71) (bHLH 71) (Transcription factor EN 17) (bHLH transcription factor bHLH071),Beta HLH protein 71 FUNCTION: Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. 36647,32746 Transcription factor bHLH71 (Basic helix-loop-helix protein 71) (AtbHLH71) (bHLH 71) (Transcription factor EN 17) (bHLH transcription factor bHLH071),Beta HLH protein 71 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}. locus:2178560; AT5G46690 transcription factor Os02g0691500 protein (Putative basic-helix-loop-helix transcription factor) Q6ZGS3 Q6ZGS3_ORYSJ Os02g0691500 OJ1148_D05.9 OsJ_07997 OSNPB_020691500 ENOG411E25C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein A0A0P0WA72 A0A0P0WA72_ORYSJ Os04g0422600 OSNPB_040422600 ENOG411E25F FDM4 Q9LMH6 FDM4_ARATH Factor of DNA methylation 4 FUNCTION: Acts in association with FDM3 and FDM5 for RNA-directed DNA methylation (RdDM). {ECO:0000269|PubMed:22302148}. 85868 Factor of DNA methylation 4 nucleolar ribonuclease P complex [GO:0005655]; methyltransferase activity [GO:0008168]; RNA-directed DNA methylation [GO:0080188] locus:2014754; AT1G13790 XH XS domain-containing protein NA NA NA NA NA NA NA ENOG411E25G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411E25D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0560300 protein Q688Y8 Q688Y8_ORYSJ Os05g0560300 OJ1115_B06.5 OsJ_19527 OSNPB_050560300 ENOG411E25E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0672200 protein,Os11g0671950 protein Q0IR70,A0A0P0Y569 Q0IR70_ORYSJ,A0A0P0Y569_ORYSJ Os11g0672200 Os11g0672200 OSNPB_110672200,Os11g0671950 OSNPB_110671950 ENOG411E25Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protein of unknown function (DUF 659) Os09g0499600 protein Q0J0T2 Q0J0T2_ORYSJ Os09g0499600 Os09g0499600 OsJ_29897 OSNPB_090499600 ENOG411E25X NF-YC10 Q9LN09,A0A1P8AN83 Q9LN09_ARATH,A0A1P8AN83_ARATH At1g07980 (Nuclear factor Y, subunit C10) (T6D22.7),Nuclear factor Y, subunit C10 23027,19160 At1g07980 (Nuclear factor Y, subunit C10) (T6D22.7),Nuclear factor Y, subunit C10 nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982] locus:2205170; AT1G07980 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone-like transcription factor and archaeal histone family protein, expressed (Os03g0852300 protein) (cDNA clone:J033133H15, full insert sequence) Q10AH3 Q10AH3_ORYSJ Os03g0852300 LOC_Os03g63530 Os03g0852300 OSNPB_030852300 ENOG411E25Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: binding domain) protein Os09g0473350 protein,Os09g0473300 protein (Fragment) Q6K4B8,A0A0P0XPM5 Q6K4B8_ORYSJ,A0A0P0XPM5_ORYSJ Os09g0473350 OJ1509_C06.26 OSJNBa0026C08.10 OSNPB_090473350,Os09g0473300 OSNPB_090473300 ENOG411E25R PEX13 Q9SRR0 PEX13_ARATH Peroxisomal membrane protein 13 (ABSTINENCE BY MUTUAL CONSENT) (Peroxin-13) (AtPEX13) (Peroxisome biogenesis protein 13) (Pex13p) (Protein ABERRANT PEROXISOME MORPHOLOGY 2) (Protein AMC) DISRUPTION PHENOTYPE: Lethal, when homozygous. {ECO:0000269|PubMed:18160292}. apm2 mutants showed decreased efficiency of PTS1- and PTS2- (peroxisome targeting signal)-dependent protein transport into peroxisome. apm2 mutation also represses plant growth. Short inflorescence stems; Short roots; Root growth resistant to 2,4-DB-M. Nishimura-2006 FUNCTION: Involved in PTS1- and PTS2-dependent protein import into peroxisomes (PubMed:16813573, PubMed:17478547). Required for PTS1-dependent protein import into pollen peroxisomes (PubMed:18160292). Acts as a docking factor on peroxisomal membranes (PubMed:16813573). Required for the proper targeting of PEX7 to the peroxisome (PubMed:19594707). Required for the export/release of receptors on the peroxisome membrane (PubMed:19594707). Essential for pollen-tube discharge that take place only in the presence of functional peroxisomes in either the male or the female gametophyte (PubMed:18160292). {ECO:0000269|PubMed:16813573, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:18160292, ECO:0000269|PubMed:19594707}. 31286 Peroxisomal membrane protein 13 (ABSTINENCE BY MUTUAL CONSENT) (Peroxin-13) (AtPEX13) (Peroxisome biogenesis protein 13) (Pex13p) (Protein ABERRANT PEROXISOME MORPHOLOGY 2) (Protein AMC) integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; fatty acid beta-oxidation [GO:0006635]; protein import into peroxisome matrix [GO:0016558]; protein import into peroxisome matrix, docking [GO:0016560] TISSUE SPECIFICITY: Highly expressed in pollen. Detected in shoots, roots, stems, leaves, inflorescences and emasculated postils. Strongly expressed in both male and female gametophytes during fertilization. {ECO:0000269|PubMed:18160292}. locus:2079621; AT3G07560 glycine-rich protein Os07g0152800 protein (Putative glycine-rich protein) (cDNA clone:J013023D18, full insert sequence),Expressed protein (Os03g0786000 protein) (cDNA clone:006-212-H02, full insert sequence) (cDNA clone:J033010B08, full insert sequence) Q6YT74,Q10CE6 Q6YT74_ORYSJ,Q10CE6_ORYSJ Os07g0152800 Os07g0152800 B1364A02.32 OsJ_23124 OSNPB_070152800,LOC_Os03g57210 Os03g0786000 OsJ_12860 OSNPB_030786000 ENOG411E25S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-acyltransferase WSD1-like NA NA NA NA NA NA NA ENOG411E25P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0353500 protein A0A0P0WLE3 A0A0P0WLE3_ORYSJ Os05g0353500 OSNPB_050353500 ENOG411E25Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E25V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-conjugating enzyme E2 19-like NA NA NA NA NA NA NA ENOG411E25T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor A-9 (Heat stress transcription factor 8) (rHsf8) (Heat stress transcription factor 9) (OsHsf-09) Q10PR4 HSFA9_ORYSJ HSFA9 HSF09 HSF8 Os03g0224700 LOC_Os03g12370 OsJ_009601 OSJNBa0081P02.6 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411E25U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Os03g0144300 protein (Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed) Q10RW1 Q10RW1_ORYSJ LOC_Os03g05060 Os03g0144300 OSNPB_030144300 ENOG411E258 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA branched-chain-amino-acid aminotransferase NA NA NA NA NA NA NA ENOG411E259 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os05g0352750 protein A0A0N7KKL4 A0A0N7KKL4_ORYSJ Os05g0352750 OSNPB_050352750 ENOG411E252 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0969200 protein (Fragment),Os01g0967800 protein,Os01g0967800 protein (Fragment),Os01g0970200 protein C7IXL1,Q5JLF3,A0A0P0VD94,A0A0P0VDB5 C7IXL1_ORYSJ,Q5JLF3_ORYSJ,A0A0P0VD94_ORYSJ,A0A0P0VDB5_ORYSJ Os01g0969200 Os01g0969200 OSNPB_010969200,Os01g0967800 OJ1656_A11.3-1 OsJ_04899 OSNPB_010967800,Os01g0967800 OSNPB_010967800,Os01g0970200 OSNPB_010970200 ENOG411E253 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Armadillo/beta-catenin-like repeat NA NA NA NA NA NA NA ENOG411E250 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os02g0565800 protein A0A0P0VKK1 A0A0P0VKK1_ORYSJ Os02g0565800 OSNPB_020565800 ENOG411E251 Q9SUU8,Q0WP65,Q9SLA4,C0Z2F6 Q9SUU8_ARATH,Q0WP65_ARATH,Q9SLA4_ARATH,C0Z2F6_ARATH At4g32440 (Plant Tudor-like RNA-binding protein) (Uncharacterized protein AT4g32440) (Uncharacterized protein F8B4.140),Plant Tudor-like RNA-binding protein (Uncharacterized protein At4g32440),Plant Tudor-like protein (Uncharacterized protein At2g25590),AT4G32440 protein (Plant Tudor-like RNA-binding protein) 42224,43938,44213,33741 At4g32440 (Plant Tudor-like RNA-binding protein) (Uncharacterized protein AT4g32440) (Uncharacterized protein F8B4.140),Plant Tudor-like RNA-binding protein (Uncharacterized protein At4g32440),Plant Tudor-like protein (Uncharacterized protein At2g25590),AT4G32440 protein (Plant Tudor-like RNA-binding protein) locus:2127816;,locus:2050266; AT4G32440,AT2G25590 agenet domain containing protein Os02g0204500 protein (cDNA clone:J013149J03, full insert sequence),Agenet domain-containing protein-like (Os06g0600700 protein),Os06g0600700 protein (cDNA clone:J013001D22, full insert sequence),Os02g0204500 protein (Putative agenet domain-containing protein) (cDNA clone:J013160F14, full insert sequence) (cDNA clone:J023038I16, full insert sequence) B7EEL6,Q69XL1,Q0DB58,Q6Z6D8 B7EEL6_ORYSJ,Q69XL1_ORYSJ,Q0DB58_ORYSJ,Q6Z6D8_ORYSJ Os02g0204500 OSNPB_020204500,P0486H12.1-1 Os06g0600700 P0457B11.13-1 OSNPB_060600700,Os06g0600700 Os06g0600700 OSNPB_060600700,P0544H11.20-1 Os02g0204500 OsJ_05817 OSJNBb0056C19.4-1 OSNPB_020204500 ENOG411E256 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411E257 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pathogen-related Os01g0248500 protein (Putative pathogenesis related protein) (cDNA clone:006-208-D11, full insert sequence),Os01g0248300 protein (Putative pathogenesis related protein) Q9XHX3,Q9XHX6 Q9XHX3_ORYSJ,Q9XHX6_ORYSJ OSJNBa0049B20.20 Os01g0248500 OSNPB_010248500 P0034C11.23,OSJNBa0049B20.17 Os01g0248300 OSNPB_010248300 P0034C11.19 ENOG411E254 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TLC DNA-binding storekeeper protein, putative, expressed (Os12g0242800 protein) (cDNA clone:002-135-B08, full insert sequence) Q2QV58 Q2QV58_ORYSJ LOC_Os12g13940 Os12g0242800 OSNPB_120242800 ENOG411E255 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance-related receptor-like kinase Os01g0116300 protein,Os01g0113800 protein (Putative rust resistance kinase Lr10) (cDNA clone:J023005G06, full insert sequence),Os01g0114900 protein,Os01g0115600 protein (Putative receptor serine/threonine kinase PR5K),Os01g0113500 protein (Putative rust resistance kinase Lr10),Os01g0116900 protein,Os01g0114500 protein,Os01g0117300 protein (Fragment),Os01g0113200 protein,Os01g0117700 protein,Os01g0114700 protein (Fragment),Os01g0117266 protein,Os01g0115900 protein,Os01g0117100 protein (Fragment),Os01g0117500 protein C7IXI1,Q9ARM8,Q0JR80,Q9FTF3,Q656W4,A0A0P0UY53,A0A0P0UXP5,A0A0N7KC83,A0A0P0UXM0,A0A0P0UXE2,A0A0P0UXP7,A0A0P0UX82,A0A0P0UXI9,A0A0P0UXZ7,A0A0P0UXI3 C7IXI1_ORYSJ,Q9ARM8_ORYSJ,Q0JR80_ORYSJ,Q9FTF3_ORYSJ,Q656W4_ORYSJ,A0A0P0UY53_ORYSJ,A0A0P0UXP5_ORYSJ,A0A0N7KC83_ORYSJ,A0A0P0UXM0_ORYSJ,A0A0P0UXE2_ORYSJ,A0A0P0UXP7_ORYSJ,A0A0P0UX82_ORYSJ,A0A0P0UXI9_ORYSJ,A0A0P0UXZ7_ORYSJ,A0A0P0UXI3_ORYSJ Os01g0116300 Os01g0116300 OSNPB_010116300,Os01g0113800 OJ1212_B09.8 OsJ_00118 OSNPB_010113800,Os01g0114900 Os01g0114900 OSNPB_010114900,Os01g0115600 OJ1212_B09.41 OSNPB_010115600 P0463F06.25,Os01g0113500 OJ1212_B09.4 OsJ_00115 OSJNBb0032H19.32 OSNPB_010113500,Os01g0116900 OSNPB_010116900,Os01g0114500 OSNPB_010114500,Os01g0117300 OSNPB_010117300,Os01g0113200 OSNPB_010113200,Os01g0117700 OSNPB_010117700,Os01g0114700 OSNPB_010114700,Os01g0117266 OSNPB_010117266,Os01g0115900 OSNPB_010115900,Os01g0117100 OSNPB_010117100,Os01g0117500 OSNPB_010117500 ENOG411EJ5B Q9FN07 Y5638_ARATH UPF0725 protein At5g63820 25992 UPF0725 protein At5g63820 locus:2163956; AT5G63820 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EJ5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os02g0186300 protein A3A3X1 A3A3X1_ORYSJ Os02g0186300 OsJ_05666 OSNPB_020186300 ENOG411EJ5A F1C9.26 Q9S839 Q9S839_ARATH At3g01960 (F1C9.26 protein) (F28J7.29 protein) 15567 At3g01960 (F1C9.26 protein) (F28J7.29 protein) locus:2078718; AT3G01960 NA NA NA NA NA NA NA NA ENOG411EJ5F Q3ECE2,O64598,O64597,Q9SSK2,Q9SRD0,Q9FVV5 FB85_ARATH,FB82_ARATH,FB83_ARATH,FB86_ARATH,FB88_ARATH,Q9FVV5_ARATH Putative F-box protein At1g70960,Putative F-box protein At1g70380,Putative F-box protein At1g70390,Putative F-box protein At1g70970,Putative F-box protein At1g76830,F-box associated ubiquitination effector family protein (Uncharacterized protein F3I17.6) 43411,43907,38596,46677,42687,22916 Putative F-box protein At1g70960,Putative F-box protein At1g70380,Putative F-box protein At1g70390,Putative F-box protein At1g70970,Putative F-box protein At1g76830,F-box associated ubiquitination effector family protein (Uncharacterized protein F3I17.6) locus:2013915;,locus:2016149;,locus:2016144;,locus:2013995;,locus:2030046;,locus:2032328; AT1G70960,AT1G70380,AT1G70390,AT1G70970,AT1G76830,AT1G71290 F-box associated domain NA NA NA NA NA NA NA ENOG411EJ5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR NA NA NA NA NA NA NA ENOG411EJ5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N-acetylglucosaminyl transferase component (Gpi1) NA NA NA NA NA NA NA ENOG411EJ5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0714750 protein A0A0P0W2R5 A0A0P0W2R5_ORYSJ Os03g0714750 OSNPB_030714750 ENOG411EJ5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EJ5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PQQ NA NA NA NA NA NA NA ENOG411EJ5N Q8VZU6 Q8VZU6_ARATH Uncharacterized protein At5g54585 14690 Uncharacterized protein At5g54585 locus:504954876; AT5G54585 NA NA NA NA NA NA NA NA ENOG411EJ5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Proteasome (Prosome macropain) activator subunit 4 NA NA NA NA NA NA NA ENOG411EJ5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mpv17 / PMP22 family NA NA NA NA NA NA NA ENOG411EJ5P Q9LYY7,Q9LYY6,Q9LYY3,Q9LYY5,O80573,Q9LX87,Q6NLS9,A0A1P8BH96,F4IG53 FK107_ARATH,FK108_ARATH,FK110_ARATH,FK109_ARATH,FBK45_ARATH,FBK74_ARATH,Q6NLS9_ARATH,A0A1P8BH96_ARATH,F4IG53_ARATH Putative F-box/kelch-repeat protein At5g02980,Putative F-box/kelch-repeat protein At5g02990,F-box/kelch-repeat protein At5g03020,Putative F-box/kelch-repeat protein At5g03000,Putative F-box/kelch-repeat protein At2g44030,Putative F-box/kelch-repeat protein At3g46050,At5g03010 (Galactose oxidase/kelch repeat superfamily protein),Galactose oxidase/kelch repeat protein (Fragment),Galactose oxidase/kelch repeat superfamily protein 38512,42510,40218,40163,42860,41731,26821,36177,14509 Putative F-box/kelch-repeat protein At5g02980,Putative F-box/kelch-repeat protein At5g02990,F-box/kelch-repeat protein At5g03020,Putative F-box/kelch-repeat protein At5g03000,Putative F-box/kelch-repeat protein At2g44030,Putative F-box/kelch-repeat protein At3g46050,At5g03010 (Galactose oxidase/kelch repeat superfamily protein),Galactose oxidase/kelch repeat protein (Fragment),Galactose oxidase/kelch repeat superfamily protein locus:2143418;,locus:2143428;,locus:2143468;,locus:2143438;,locus:2051834;,locus:2075241;,locus:2143453;,locus:504956016; AT5G02980,AT5G02990,AT5G03020,AT5G03000,AT2G44030,AT3G46050,AT5G03010,AT2G45406 Kelch NA NA NA NA NA NA NA ENOG411EJ5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EJ5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ATP-binding cassette sub-family B (MDR TAP) NA NA NA NA NA NA NA ENOG411EJ5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family NA NA NA NA NA NA NA ENOG411EJ5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0328500 protein A0A0P0WW23 A0A0P0WW23_ORYSJ Os06g0328500 OSNPB_060328500 ENOG411EA7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) NA NA NA NA NA NA NA ENOG411EJ52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ NA NA NA NA NA NA NA ENOG411EJ53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJ51 F4P12_250,MNF13.30 Q9LFG4,F4KIR0 Q9LFG4_ARATH,F4KIR0_ARATH FBD-like domain family protein (Uncharacterized protein F4P12_250),FBD / Leucine Rich Repeat domains containing protein 29211,34128 FBD-like domain family protein (Uncharacterized protein F4P12_250),FBD / Leucine Rich Repeat domains containing protein locus:2083991;,locus:2168838; AT3G53550,AT5G40750 FBD NA NA NA NA NA NA NA ENOG411EJ56 Q9SA08,A0A1P8AQ83,F4I3A2 Q9SA08_ARATH,A0A1P8AQ83_ARATH,F4I3A2_ARATH F28K20.8 protein (K-box region protein (DUF1985)),K-box region protein (DUF1985),Transmembrane protein, putative (DUF1985) 76895,70856,49707 F28K20.8 protein (K-box region protein (DUF1985)),K-box region protein (DUF1985),Transmembrane protein, putative (DUF1985) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700],integral component of membrane [GO:0016021] locus:2029549;,locus:2203053; AT1G31150,AT1G36970 Domain of unknown function (DUF1985) NA NA NA NA NA NA NA ENOG411EJ57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: replication factor c NA NA NA NA NA NA NA ENOG411EJ54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Matrixin NA NA NA NA NA NA NA ENOG411EJ55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0183300 protein A0A0P0XSC6 A0A0P0XSC6_ORYSJ Os10g0183300 OSNPB_100183300 ENOG411EJ58 F4HZH7 F4HZH7_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 19800 Plant invertase/pectin methylesterase inhibitor superfamily protein pectinesterase inhibitor activity [GO:0046910] locus:2012365; AT1G09370 Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EJ59 Q9SZD3,A0A1P8B973,F4JN58,B3H5F7 Q9SZD3_ARATH,A0A1P8B973_ARATH,F4JN58_ARATH,B3H5F7_ARATH Glycine-rich protein like (Putative membrane lipoprotein),Plant self-incompatibility protein S1 family protein,Plant self-incompatibility protein S1 family 10303,19362,16423,17363 Glycine-rich protein like (Putative membrane lipoprotein),Plant self-incompatibility protein S1 family protein,Plant self-incompatibility protein S1 family locus:2119916;,locus:1006230321;,locus:4515103528; AT4G29030,AT4G10895,AT5G04047 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EHBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: arabinogalactan protein Os09g0512900 protein (cDNA clone:001-040-B04, full insert sequence) (cDNA clone:006-308-D09, full insert sequence),Os09g0512900 protein Q69IN9,A0A0P0XP41 Q69IN9_ORYSJ,A0A0P0XP41_ORYSJ P0450E05.3-1 Os09g0512900 OsJ_02690 OSNPB_090512900,Os09g0512900 OSNPB_090512900 ENOG411EMFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM NA NA NA NA NA NA NA ENOG411EMFS Q0WV86,F4JDV4 Q0WV86_ARATH,F4JDV4_ARATH Transmembrane protein (Uncharacterized protein At3g48200),Phox (PX) domain-containing protein 122158,103589 Transmembrane protein (Uncharacterized protein At3g48200),Phox (PX) domain-containing protein integral component of membrane [GO:0016021],phosphatidylinositol binding [GO:0035091] locus:2100464;,locus:504955665; AT3G48200,AT3G48195 PX NA NA NA NA NA NA NA ENOG411EMF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) Os09g0479400 protein Q652D7 Q652D7_ORYSJ Os09g0479400 Os09g0479400 OSNPB_090479400 P0463G11.14 ENOG411EMF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411EICC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial regulatory proteins lacI family NA NA NA NA NA NA NA ENOG411EICE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0547600 protein (cDNA clone:J033086M06, full insert sequence) Q6L599 Q6L599_ORYSJ Os05g0547600 OJ1345_B12.15 OsJ_19434 OSNPB_050547600 ENOG411EICH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0520502 protein,Os10g0520501 protein A0A0N7KS33,A0A0P0XWA8 A0A0N7KS33_ORYSJ,A0A0P0XWA8_ORYSJ Os10g0520502 OSNPB_100520502,Os10g0520501 OSNPB_100520501 ENOG411EICN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: asparagine-linked glycosylation 11 alpha-12-mannosyltransferase homolog (yeast) NA NA NA NA NA NA NA ENOG411EICM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Drosophila protein of unknown function DUF287 NA NA NA NA NA NA NA ENOG411EICS MEE26 Q9M875,O64751,A0A1I9LQ92 Q9M875_ARATH,O64751_ARATH,A0A1I9LQ92_ARATH F16B3.30 protein (Glycine-rich protein family),Expressed protein (Hydroxyproline-rich glycoprotein family protein),Glycine-rich protein family 22099,12383,19934 F16B3.30 protein (Glycine-rich protein family),Expressed protein (Hydroxyproline-rich glycoprotein family protein),Glycine-rich protein family embryo development ending in seed dormancy [GO:0009793] locus:2076914;,locus:2044687; AT3G02670,AT2G34870 NA NA NA NA NA NA NA NA ENOG411EICR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EICT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WGS project CAID00000000 data contig chromosome 12 NA NA NA NA NA NA NA ENOG411EICZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EICY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0691700 protein Q0D9Y4 Q0D9Y4_ORYSJ Os06g0691700 Os06g0691700 OSNPB_060691700 ENOG411EIC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0166450 protein A0A0P0XZQ2 A0A0P0XZQ2_ORYSJ Os11g0166450 OSNPB_110166450 ENOG411EIC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E3Q2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Exonuclease 3'-5' domain containing 2 Os07g0112200 protein,Os07g0112300 protein (Fragment) A3BFX5,A0A0P0X1X7 A3BFX5_ORYSJ,A0A0P0X1X7_ORYSJ Os07g0112200 OsJ_22848 OSNPB_070112200,Os07g0112300 OSNPB_070112300 ENOG411E3Q1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic blue protein Chemocyanin, putative, expressed (Os03g0709300 protein) (Plastocyanin-like domain, putative) (cDNA clone:J023015O19, full insert sequence),Chemocyanin, putative, expressed (Os03g0850900 protein) (Putative basic blue copper protein) (cDNA clone:001-104-D10, full insert sequence) Q53RK6,Q851Z0 Q53RK6_ORYSJ,Q851Z0_ORYSJ Os03g0709300 LOC_Os03g50160 Os03g0709300 OsJ_12301 OSNPB_030709300,Os03g0850900 LOC_Os03g63390 Os03g0850900 OsJ_13385 OSJNBa0015N08.11 OSNPB_030850900 ENOG411E3Q9 P0DI19,Q0WMV8 PHF5A_ARATH,PHF5B_ARATH PHD finger-like domain-containing protein 5A,PHD finger-like domain-containing protein 5B R-ATH-72163; 12429 PHD finger-like domain-containing protein 5A,PHD finger-like domain-containing protein 5B catalytic step 2 spliceosome [GO:0071013]; precatalytic spliceosome [GO:0071011]; U12-type spliceosomal complex [GO:0005689]; U2 snRNP [GO:0005686]; mRNA splicing, via spliceosome [GO:0000398] AT2G30000,AT1G07170 PHF5-like protein OSJNBa0084K01.16 protein (Os04g0663300 protein) (Os05g0367000 protein) (cDNA clone:J033131E21, full insert sequence) (cDNA, clone: J075162F09, full insert sequence),Os11g0495400 protein Q7XM15,A0A0P0Y2V6 Q7XM15_ORYSJ,A0A0P0Y2V6_ORYSJ Os04g0663300 Os05g0367000 OJ1393_A07.3 OsJ_16517 OsJ_18267 OSJNBa0084K01.16 OSNPB_040663300 OSNPB_050367000,Os11g0495400 OSNPB_110495400 ENOG411DU71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sec23 sec24 transport family protein NA NA NA NA NA NA NA ENOG411DS9U F4J4H2,F4J4G9,A0A1I9LQW2 F4J4H2_ARATH,F4J4G9_ARATH,A0A1I9LQW2_ARATH Stress response NST1-like protein 94786,94722,92286 Stress response NST1-like protein integral component of membrane [GO:0016021] locus:2098262;,locus:2098252; AT3G51650,AT3G51640 expressed protein Expressed protein (Os12g0112600 protein),Os11g0113200 protein Q2QYN0,A0A0P0XY05 Q2QYN0_ORYSJ,A0A0P0XY05_ORYSJ Os12g0112600 LOC_Os12g02130 Os12g0112600 OSNPB_120112600,Os11g0113200 OSNPB_110113200 ENOG411DU7N UMAMIT21 Q9FGG3,A0A1P8BGD8 WTR45_ARATH,A0A1P8BGD8_ARATH WAT1-related protein At5g64700,WAT1-related protein 39753,29217 WAT1-related protein At5g64700,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2176065; AT5G64700 auxin-induced protein WAT1-related protein (Fragment),WAT1-related protein Q0JPQ9,Q65XI0,A0A0P0WGW1,A0A0P0XYH6,A0A0P0UZM2,A0A0P0V0A3 Q0JPQ9_ORYSJ,Q65XI0_ORYSJ,A0A0P0WGW1_ORYSJ,A0A0P0XYH6_ORYSJ,A0A0P0UZM2_ORYSJ,A0A0P0V0A3_ORYSJ Os01g0208000 Os01g0208000 OSNPB_010208000,Os05g0106200 OSJNBb0035J08.13 OSNPB_050106200,Os05g0106300 OSNPB_050106300,Os11g0136300 OSNPB_110136300,Os01g0207900 OSNPB_010207900,Os01g0207700 OSNPB_010207700 ENOG411DS9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KIP1-like protein Os07g0695400 protein (Putative kinase interacting protein 1) Q6Z3X7 Q6Z3X7_ORYSJ Os07g0695400 Os07g0695400 OsJ_25709 OSNPB_070695400 P0627E10.23 ENOG411DS9Q Q84R14,F4JES7 Q84R14_ARATH,F4JES7_ARATH Amino-terminal region of chorein (Uncharacterized protein At3g20720),Amino-terminal region of chorein 130950,122847 Amino-terminal region of chorein (Uncharacterized protein At3g20720),Amino-terminal region of chorein locus:2091941; AT3G20720 Inherit from KOG: uhrf1 binding protein Os04g0628600 protein Q0J9W2 Q0J9W2_ORYSJ Os04g0628600 Os04g0628600 OSNPB_040628600 ENOG411EM0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 ATP-dependent DNA helicase (EC 3.6.4.12) (Fragment),ATP-dependent DNA helicase (EC 3.6.4.12) Q0D7F1,A0A0P0W9G1,A0A0P0V5T8,A0A0P0XAW2 Q0D7F1_ORYSJ,A0A0P0W9G1_ORYSJ,A0A0P0V5T8_ORYSJ,A0A0P0XAW2_ORYSJ Os07g0255200 Os07g0255200 OSNPB_070255200,Os04g0357300 OSNPB_040357300,Os01g0646700 OSNPB_010646700,Os08g0112000 OSNPB_080112000 ENOG411EM0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411E6AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os02g0687100 protein Q6ZHB6 Q6ZHB6_ORYSJ Os02g0687100 OJ1717_A09.42 OsJ_07971 OSNPB_020687100 ENOG411E6AN RTNLB13 O64837 RTNLM_ARATH Reticulon-like protein B13 (AtRTNLB13) 23771 Reticulon-like protein B13 (AtRTNLB13) endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum tubular network [GO:0071782]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; endoplasmic reticulum tubular network organization [GO:0071786] locus:2046783; AT2G23640 Reticulon-like protein NA NA NA NA NA NA NA ENOG411DXKP DREB1A,DREB1C,DREB1B Q9M0L0,Q9SYS6,P93835 DRE1A_ARATH,DRE1C_ARATH,DRE1B_ARATH Dehydration-responsive element-binding protein 1A (Protein DREB1A) (C-repeat/dehydration-responsive element-binding factor 3) (C-repeat-binding factor 3) (CRT/DRE-binding factor 3) (Cold resistance-related AP2 transcription factor),Dehydration-responsive element-binding protein 1C (Protein DREB1C) (C-repeat/dehydration-responsive element-binding factor 2) (C-repeat-binding factor 2) (CRT/DRE-binding factor 2),Dehydration-responsive element-binding protein 1B (Protein DREB1B) (C-repeat/dehydration-responsive element-binding factor 1) (C-repeat-binding factor 1) (CRT/DRE-binding factor 1) Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is similar to that of wild type.,Plants have higher capacity to tolerate freezing than WT plants before and after cold acclimation and are more tolerant to dehydration and salt stress. Short hypocotyl under red light-P. Quail-2006,Resistant to drought, freezing, and salt stress-J. Salinas-2004 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:16244146}. 24236,24264,23830 Dehydration-responsive element-binding protein 1A (Protein DREB1A) (C-repeat/dehydration-responsive element-binding factor 3) (C-repeat-binding factor 3) (CRT/DRE-binding factor 3) (Cold resistance-related AP2 transcription factor),Dehydration-responsive element-binding protein 1C (Protein DREB1C) (C-repeat/dehydration-responsive element-binding factor 2) (C-repeat-binding factor 2) (CRT/DRE-binding factor 2),Dehydration-responsive element-binding protein 1B (Protein DREB1B) (C-repeat/dehydration-responsive element-binding factor 1) (C-repeat-binding factor 1) (CRT/DRE-binding factor 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cold acclimation [GO:0009631]; response to cold [GO:0009409]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cold acclimation [GO:0009631]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cold acclimation [GO:0009631]; positive regulation of transcription, DNA-templated [GO:0045893]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves and roots. {ECO:0000269|PubMed:9735350}. locus:2131849;,locus:2131834;,locus:2131854; AT4G25480,AT4G25470,AT4G25490 dehydration-responsive element-binding protein NA NA NA NA NA NA NA ENOG411DXKS Q9SVN5,F4KDS0 SYMC_ARATH,F4KDS0_ARATH Methionine--tRNA ligase, cytoplasmic (EC 6.1.1.10) (Methionyl-tRNA synthetase) (MetRS),Methionine-tRNA ligase ARA:AT4G13780-MONOMER; 6.1.1.10 89854,15307 Methionine--tRNA ligase, cytoplasmic (EC 6.1.1.10) (Methionyl-tRNA synthetase) (MetRS),Methionine-tRNA ligase cytosol [GO:0005829]; ATP binding [GO:0005524]; methionine-tRNA ligase activity [GO:0004825]; tRNA binding [GO:0000049]; methionyl-tRNA aminoacylation [GO:0006431]; response to cadmium ion [GO:0046686]; tRNA aminoacylation for protein translation [GO:0006418],ATP binding [GO:0005524]; valine-tRNA ligase activity [GO:0004832]; valyl-tRNA aminoacylation [GO:0006438] locus:2119515;,locus:2181713; AT4G13780,AT5G02680 methionyl-tRNA synthetase Probable methionine--tRNA ligase (EC 6.1.1.10) (Methionyl-tRNA synthetase) (MetRS),Os06g0508700 protein Q9ZTS1,A0A0P0WX12 SYM_ORYSJ,A0A0P0WX12_ORYSJ Os06g0508700 LOC_Os06g31210 P0561B08.33,Os06g0508700 OSNPB_060508700 ENOG411DXKW Q3EDL4,A0A1P8B517,F4JI10,F4JI11,F4HSC9 Y1154_ARATH,A0A1P8B517_ARATH,F4JI10_ARATH,F4JI11_ARATH,F4HSC9_ARATH Probable serine/threonine-protein kinase At1g01540 (EC 2.7.11.1),Protein kinase superfamily protein 2.7.11.1 52325,50376,53663,53535,42775 Probable serine/threonine-protein kinase At1g01540 (EC 2.7.11.1),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2025396;,locus:2125038; AT1G01540,AT4G01330 serine threonine-protein kinase Os03g0125600 protein (Protein kinase domain containing protein, expressed) Q10SE3 Q10SE3_ORYSJ Os03g0125600 LOC_Os03g03410 OSNPB_030125600 ENOG411DXKY NAC017,NAC016 Q9XIC5,A4FVP6,A0A1P8AVH2,A0A1P8AVL5 NAC17_ARATH,NAC16_ARATH,A0A1P8AVH2_ARATH,A0A1P8AVL5_ARATH NAC domain-containing protein 17 (ANAC017) (Protein NTM1-like 7) (Protein REGULATORS OF AOX1A 2),NAC domain-containing protein 16 (ANAC016) (Protein NTM1-like 3),NAC domain containing protein 16 DISRUPTION PHENOTYPE: Stay-green phenotype during senescence, salt stress and oxidative stress. {ECO:0000269|PubMed:23926065}. FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.,FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}. 62587,63407,50676,52110 NAC domain-containing protein 17 (ANAC017) (Protein NTM1-like 7) (Protein REGULATORS OF AOX1A 2),NAC domain-containing protein 16 (ANAC016) (Protein NTM1-like 3),NAC domain containing protein 16 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to hydrogen peroxide [GO:0070301]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of leaf senescence [GO:1900057]; positive regulation of transcription, DNA-templated [GO:0045893]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:23926065}. TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.,TISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. locus:2009096;,locus:2026114; AT1G34190,AT1G34180 NAC domain containing protein Os09g0493700 protein (cDNA clone:J013112C23, full insert sequence) (cDNA clone:J013155B08, full insert sequence) Q0J0L8 Q0J0L8_ORYSJ Os09g0493700 Os09g0493700 OSNPB_090493700 ENOG411DXKX Q84MC0 UGPI4_ARATH Uncharacterized GPI-anchored protein At3g06035 22053 Uncharacterized GPI-anchored protein At3g06035 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:505006331; AT3G06035 gpi-anchored protein Os07g0645000 protein (cDNA, clone: J075182P04, full insert sequence) Q8LI99 Q8LI99_ORYSJ OJ1458_B07.124 Os07g0645000 OsJ_25346 OSNPB_070645000 ENOG411DXKA SEC22 Q94AU2,Q8L702,F4IAJ8 SEC22_ARATH,Q8L702_ARATH,F4IAJ8_ARATH 25.3 kDa vesicle transport protein (AtSEC22),B-cell receptor-associated protein 31-like protein Complete male gametophyte defective; Female gametophyte defective-G. Jurgens-2011 FUNCTION: V-SNARE involved in vesicle trafficking from the ER to the Golgi complex. {ECO:0000250}. R-ATH-204005;R-ATH-5694530;R-ATH-6811434; 25332,25364,25382 25.3 kDa vesicle transport protein (AtSEC22),B-cell receptor-associated protein 31-like protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; protein localization to endoplasmic reticulum exit site [GO:0070973],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular protein transport [GO:0006886] locus:2008960;,locus:1005716776; AT1G11890,AT1G11905 25.3 kDa vesicle transport Os01g0234800 protein (Putative ERS-24),25.3 kDa vesicle transport protein, putative, expressed (Os03g0791500 protein) (Putative vesicle trafficking protein) (cDNA, clone: J100078I24, full insert sequence),Os08g0307300 protein (Putative vesicle trafficking protein),Os06g0198800 protein Q5NAX9,Q852J3,Q6UU98,A0A0P0WTN0 Q5NAX9_ORYSJ,Q852J3_ORYSJ,Q6UU98_ORYSJ,A0A0P0WTN0_ORYSJ P0702F03.25 Os01g0234800 OSNPB_010234800,OSJNBb0060J21.31 Os03g0791500 LOC_Os03g57760 OsJ_12902 OSNPB_030791500,Os08g0307300 OsJ_26835 OSJNBa0024A05.12 OSJNBa0074N12.37 OSNPB_080307300,Os06g0198800 OSNPB_060198800 ENOG411DXKD Q941B2 Q941B2_ARATH At1g09870/F21M12_26 (Histidine acid phosphatase family protein) ARA:AT1G09870-MONOMER; R-ATH-1855231; 54855 At1g09870/F21M12_26 (Histidine acid phosphatase family protein) endoplasmic reticulum [GO:0005783]; vacuolar membrane [GO:0005774]; acid phosphatase activity [GO:0003993]; inositol phosphate phosphatase activity [GO:0052745] locus:2024402; AT1G09870 Multiple inositol polyphosphate phosphatase Histidine acid phosphatase family protein, putative, expressed (Os03g0818100 protein) (Putative multiple inositol polyphosphate phosphatase),Os03g0818100 protein Q84TX6,A0A0N7KIA4 Q84TX6_ORYSJ,A0A0N7KIA4_ORYSJ Os03g0818100 LOC_Os03g60370 Os03g0818100 OsJ_13121 OSJNBa0094J08.7 OSNPB_030818100,Os03g0818100 OSNPB_030818100 ENOG411DXKF BLH7 Q9SIW1 BLH7_ARATH BEL1-like homeodomain protein 7 (BEL1-like protein 7) 54244 BEL1-like homeodomain protein 7 (BEL1-like protein 7) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2042609; AT2G16400 homeodomain Os03g0165300 protein (Fragment) A0A0P0VTG7 A0A0P0VTG7_ORYSJ Os03g0165300 OSNPB_030165300 ENOG411DXKI CPN60A1 P21238 CPNA1_ARATH Chaperonin 60 subunit alpha 1, chloroplastic (CPN-60 alpha 1) (Protein SCHLEPPERLESS) (RuBisCO large subunit-binding protein subunit alpha 1) DISRUPTION PHENOTYPE: Embryos are albino, can germinate but are unable to produce viable seedlings. {ECO:0000269|PubMed:11402200, ECO:0000269|PubMed:19344532}. Although most of the enzyme activities assayed can be detected in the mutant embryos most of the staining patterns obtained are aberrant: glucokinase is detected in all the embryo but with a decreased intensity of staining; G6PDH and 6PGDH at 12 DAF and PGI and ADH at 15 DAF are non-homogeneous; PGM at 15 DAF is detected in small areas of the apical region of the embryo. Embryo defective; Cotyledon-R. Goldberg-2001 FUNCTION: Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Involved in protein assisted folding. Required for proper chloroplast development. {ECO:0000269|PubMed:19344532, ECO:0000269|Ref.9}. MISCELLANEOUS: Assisted protein folding requires ATP hydrolysis, but not K(+) ions. 62072 Chaperonin 60 subunit alpha 1, chloroplastic (CPN-60 alpha 1) (Protein SCHLEPPERLESS) (RuBisCO large subunit-binding protein subunit alpha 1) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; mitochondrion organization [GO:0007005]; protein folding [GO:0006457]; protein refolding [GO:0042026] TISSUE SPECIFICITY: Expressed in leaves, stems, siliques and flowers. {ECO:0000269|PubMed:11402200}. locus:2057841; AT2G28000 RuBisCO large subunit-binding protein subunit alpha Os03g0859600 protein (Os03g0859700 protein) (Fragment),60 kDa chaperonin alpha subunit (Os12g0277500 protein) (RuBisCO subunit binding-protein alpha subunit, chloroplast, putative, expressed),Os12g0277500 protein (Fragment),Os03g0859600 protein (Fragment) C7J056,Q2QU06,A0A0P0Y8X9,A0A0P0Y903,A0A0P0Y925,A0A0P0W6L8 C7J056_ORYSJ,Q2QU06_ORYSJ,A0A0P0Y8X9_ORYSJ,A0A0P0Y903_ORYSJ,A0A0P0Y925_ORYSJ,A0A0P0W6L8_ORYSJ Os03g0859600 Os03g0859700 OSNPB_030859700,Os12g0277500 LOC_Os12g17910 Os12g0277500 OSNPB_120277500,Os12g0277500 OSNPB_120277500,Os03g0859600 OSNPB_030859600 ENOG411DXKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD dependent epimerase dehydratase family protein Os07g0601100 protein (Putative NADPH HC toxin reductase),Os07g0602000 protein (Putative NADPH HC toxin reductase) (cDNA clone:J023121D11, full insert sequence),Os07g0601000 protein (Putative NADPH HC toxin reductase),Os07g0598000 protein (Putative NADPH HC toxin reductase) (cDNA clone:001-207-B06, full insert sequence) (cDNA clone:J023068M23, full insert sequence),Os07g0601900 protein (cDNA clone:001-128-D03, full insert sequence) Q7X6N6,Q7XIG2,Q7X7U5,Q6ZJE8,Q0D4V7 Q7X6N6_ORYSJ,Q7XIG2_ORYSJ,Q7X7U5_ORYSJ,Q6ZJE8_ORYSJ,Q0D4V7_ORYSJ OJ2013_G04.105 OJ1634_B10.127 Os07g0601100 OsJ_25014 OSNPB_070601100,OJ2013_G04.121 Os07g0602000 OSJNBb0018H10.1 OSNPB_070602000,OJ2013_G04.104 OJ1634_B10.126 Os07g0601000 OsJ_25013 OSNPB_070601000,Os07g0598000 OJ1579_C03.16 OsJ_24990 OSNPB_070598000,Os07g0601900 Os07g0601900 OSNPB_070601900 ENOG411DXKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIFY 10A-like Protein TIFY 10b (OsTIFY10b) (Jasmonate ZIM domain-containing protein 7) (OsJAZ7) (OsJAZ6) Q8H395 TI10B_ORYSJ TIFY10B JAZ7 Os07g0615200 LOC_Os07g42370 P0616D06.125 FUNCTION: Repressor of jasmonate responses. {ECO:0000250|UniProtKB:Q7XPM8}. ENOG411DXK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os09g0380300 protein (Fragment) A0A0P0XL07 A0A0P0XL07_ORYSJ Os09g0380300 OSNPB_090380300 ENOG411EM09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411DT4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os11g0637200 protein (Sugar transporter family protein, expressed),Os11g0637100 protein (Fragment),Os11g0637000 protein Q2R0P8,A0A0P0Y4S0,A0A0P0Y4M3 Q2R0P8_ORYSJ,A0A0P0Y4S0_ORYSJ,A0A0P0Y4M3_ORYSJ LOC_Os11g41850 Os11g0637200 OsJ_34545 OSNPB_110637200,Os11g0637100 OSNPB_110637100,Os11g0637000 OSNPB_110637000 ENOG411DT4Q OPT2,OPT4 O04514,Q9FME8 OPT2_ARATH,OPT4_ARATH Oligopeptide transporter 2 (AtOPT2),Oligopeptide transporter 4 (AtOPT4) FUNCTION: Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. {ECO:0000250, ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:13129917}.,FUNCTION: Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. {ECO:0000269|PubMed:11788749}. 82334,81793 Oligopeptide transporter 2 (AtOPT2),Oligopeptide transporter 4 (AtOPT4) integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; oligopeptide transmembrane transporter activity [GO:0035673]; oligopeptide transporter activity [GO:0015198]; protein transport [GO:0015031],integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; oligopeptide transmembrane transporter activity [GO:0035673]; protein transport [GO:0015031]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Expressed in flowers, leaves, roots, and stems. {ECO:0000269|PubMed:11788749}. locus:2024372;,locus:2173408; AT1G09930,AT5G64410 oligopeptide transporter OSJNBa0009P12.37 protein (Os04g0594800 protein) (cDNA clone:J023072A11, full insert sequence),Isp4 protein-like (Os01g0630200 protein),Os02g0695800 protein (Fragment) B7EIF2,Q8S2I4,A0A0P0VN85 B7EIF2_ORYSJ,Q8S2I4_ORYSJ,A0A0P0VN85_ORYSJ Os04g0594800 OSJNBa0009P12.37 OSNPB_040594800,Os01g0630200 OsJ_02700 OSJNBb0035I14.12 OSNPB_010630200,Os02g0695800 OSNPB_020695800 ENOG411DT4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os10g0184200 protein (Fragment),Os08g0139650 protein Q0IYP3,A0A0P0XBN4 Q0IYP3_ORYSJ,A0A0P0XBN4_ORYSJ Os10g0184200 OSNPB_100184200,Os08g0139650 OSNPB_080139650 ENOG411DT4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oligopeptide transporter NA NA NA NA NA NA NA ENOG411DT4T POSF21,AtbZIP69,PosF21 Q04088,Q9LNE0,F4IQT9 POF21_ARATH,Q9LNE0_ARATH,F4IQT9_ARATH Probable transcription factor PosF21 (bZIP transcription factor 59) (AtbZIP59),At1g06070 (AtbZIP transcription factor) (BZip transcription factor AtbZip69) (Basic-leucine zipper (BZIP) transcription factor family protein) (T21E18.12 protein),Basic-leucine zipper (BZIP) transcription factor family protein FUNCTION: Putative transcription factor with an activatory role. 44690,47131,41716 Probable transcription factor PosF21 (bZIP transcription factor 59) (AtbZIP59),At1g06070 (AtbZIP transcription factor) (BZip transcription factor AtbZip69) (Basic-leucine zipper (BZIP) transcription factor family protein) (T21E18.12 protein),Basic-leucine zipper (BZIP) transcription factor family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700],transcription factor activity, sequence-specific DNA binding [GO:0003700] DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants. locus:2061340;,locus:2198856; AT2G31370,AT1G06070 transcription factor Transcription factor RF2a Q69IL4 RF2A_ORYSJ RF2a Os09g0516200 LOC_Os09g34060 OSJNBb0034B12.8 P0450E05.33 FUNCTION: Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. ENOG411DT4U PLSP1 Q8H0W1,A0A1I9LMR3 PLSP1_ARATH,A0A1I9LMR3_ARATH Chloroplast processing peptidase (EC 3.4.21.89) (Signal peptidase I-3),Plastidic type i signal peptidase 1 DISRUPTION PHENOTYPE: Plants are albino and seedling lethal. {ECO:0000269|PubMed:16275749}. Plants homozygous for this insertion showed a severe reduction of thylakoid development/maintenance ending up in seedling lethal. Seedling lethal; Albino-M. Ohme-Takigi-2005 FUNCTION: Involved in the maturation of the plastid protein translocation channel. Required for the biogenesis of plastid internal membranes. May also function as a thylakoidal processing peptidase. {ECO:0000269|PubMed:16275749}. 3.4.21.89; 3.4.21.89 32554,34873 Chloroplast processing peptidase (EC 3.4.21.89) (Signal peptidase I-3),Plastidic type i signal peptidase 1 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastid envelope [GO:0009526]; plastid thylakoid membrane [GO:0055035]; peptidase activity [GO:0008233]; serine-type peptidase activity [GO:0008236]; protein maturation [GO:0051604]; thylakoid membrane organization [GO:0010027],integral component of membrane [GO:0016021]; serine-type peptidase activity [GO:0008236] locus:2091717; AT3G24590 chloroplast processing Os02g0267000 protein (Putative signal peptidase I) (cDNA clone:J013100B19, full insert sequence) Q6ERV1 Q6ERV1_ORYSJ Os02g0267000 Os02g0267000 OsJ_06181 OSNPB_020267000 P0693E08.3 ENOG411DT4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) A3AX59 A3AX59_ORYSJ Os04g0604800 OsJ_16063 OSNPB_040604800 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DT4W CHAT Q9SRQ2,Q9LF70 CHAT_ARATH,Q9LF70_ARATH (Z)-3-hexen-1-ol acetyltransferase (EC 2.3.1.195),At5g17540 (HXXXD-type acyl-transferase family protein) (Uncharacterized protein K10A8_20) DISRUPTION PHENOTYPE: Loss of (3Z)-hex-3-en-1-yl acetate production. {ECO:0000269|PubMed:17163881}. FUNCTION: Acyltransferase involved in the production of green leaf volatiles (GLVs). Uses acetyl-CoA as substrate, but not malonyl-CoA or benzoyl-CoA. Prefers primary, medium-chain-length, aliphatic alcohols. {ECO:0000269|PubMed:17163881}. ARA:AT3G03480-MONOMER;MetaCyc:AT3G03480-MONOMER;,ARA:AT5G17540-MONOMER; 2.3.1.195; 2.3.1.195 50290,51724 (Z)-3-hexen-1-ol acetyltransferase (EC 2.3.1.195),At5g17540 (HXXXD-type acyl-transferase family protein) (Uncharacterized protein K10A8_20) (Z)-3-hexen-1-ol acetyltransferase activity [GO:0102165]; acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity [GO:0010327]; green leaf volatile biosynthetic process [GO:0010597],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] TISSUE SPECIFICITY: Expressed in leaves and stems. Lower levels in flowers and barely detected in roots and siliques. {ECO:0000269|PubMed:17163881}. locus:2099704;,locus:2151376; AT3G03480,AT5G17540 benzyl alcohol O-benzoyltransferase-like Os10g0503300 protein (Fragment) A0A0P0XWB6 A0A0P0XWB6_ORYSJ Os10g0503300 OSNPB_100503300 ENOG411DT4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os07g0260000 protein A0A0P0X4B2 A0A0P0X4B2_ORYSJ Os07g0260000 OSNPB_070260000 ENOG411DT4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Armadillo/beta-catenin-like repeat Arm repeat-containing protein-like protein (Os07g0587500 protein),Os03g0435300 protein (Fragment) Q6ZIQ0,A0A0P0VZU6 Q6ZIQ0_ORYSJ,A0A0P0VZU6_ORYSJ Os07g0587500 OJ1047_C01.11 OsJ_24931 OSJNBb0005G07.105 OSNPB_070587500,Os03g0435300 OSNPB_030435300 ENOG411DT4Z Q9LZN3 Q9LZN3_ARATH At5g01980 (RING/U-box superfamily protein) (Uncharacterized protein T7H20_30) R-ATH-983168; 55541 At5g01980 (RING/U-box superfamily protein) (Uncharacterized protein T7H20_30) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2185108; AT5G01980 zinc finger C3HC4 type domain containing protein expressed Os12g0118700 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J033073H23, full insert sequence),Os11g0119200 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J033119L05, full insert sequence) Q2QYH9,Q2RBA3 Q2QYH9_ORYSJ,Q2RBA3_ORYSJ LOC_Os12g02620 Os12g0118700 OsJ_35023 OSNPB_120118700,Os11g0119200 LOC_Os11g02670 Os11g0119200 OSNPB_110119200 ENOG411DT4A Q9SJ85,A0A1P8AXP3,A0A1P8AXV2 Y2474_ARATH,A0A1P8AXP3_ARATH,A0A1P8AXV2_ARATH BTB/POZ domain-containing protein At2g04740,Ankyrin repeat family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 66068,46596,50337 BTB/POZ domain-containing protein At2g04740,Ankyrin repeat family protein cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2049168; AT2G04740 BTB POZ domain-containing protein Os06g0318200 protein (Putative elongation factor 1A binding protein) (cDNA clone:002-118-E01, full insert sequence) Q5ZAA9 Q5ZAA9_ORYSJ Os06g0318200 Os06g0318200 OSNPB_060318200 P0468A12.26 ENOG411DT4C FTSH7,FTSH9 Q9SD67,Q9FIM2 FTSH7_ARATH,FTSH9_ARATH ATP-dependent zinc metalloprotease FTSH 7, chloroplastic (AtFTSH7) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 9, chloroplastic (AtFTSH9) (EC 3.4.24.-) FUNCTION: Probable ATP-dependent zinc metallopeptidase. 3.4.24.B20; 3.4.24.- 87802,87838 ATP-dependent zinc metalloprotease FTSH 7, chloroplastic (AtFTSH7) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 9, chloroplastic (AtFTSH9) (EC 3.4.24.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; metallopeptidase activity [GO:0008237]; zinc ion binding [GO:0008270]; proteolysis [GO:0006508] locus:2075581;,locus:2154568; AT3G47060,AT5G58870 ATP-dependent zinc metalloprotease FtsH ATP-dependent zinc metalloprotease FTSH 7, chloroplastic (OsFTSH7) (EC 3.4.24.-),Os02g0649700 protein (Fragment) Q6H6R9,A0A0P0VME4 FTSH7_ORYSJ,A0A0P0VME4_ORYSJ FTSH7 Os02g0649700 LOC_Os02g43350 OsJ_007487 P0048B08.24-1 P0048B08.24-2,Os02g0649700 OSNPB_020649700 FUNCTION: Probable ATP-dependent zinc metallopeptidase. {ECO:0000250}. ENOG411DT4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM domain Os01g0546000 protein (Fragment) A0A0P0V3S8 A0A0P0V3S8_ORYSJ Os01g0546000 OSNPB_010546000 ENOG411DT4E Q6NQI6,F4JJU9,F4JJU7 Q6NQI6_ARATH,F4JJU9_ARATH,F4JJU7_ARATH At4g33840/F17I5_30 (Glycosyl hydrolase family 10 protein) (Uncharacterized protein At4g33840),Glycosyl hydrolase family 10 protein ARA:AT4G33840-MONOMER; 64878,65211,64870 At4g33840/F17I5_30 (Glycosyl hydrolase family 10 protein) (Uncharacterized protein At4g33840),Glycosyl hydrolase family 10 protein hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2118894;,locus:2118914;,locus:2118884; AT4G33840,AT4G33860,AT4G33830 glycosyl hydrolase family 10 protein Os03g0201500 protein,Os03g0201901 protein (Fragment) A0A0P0VUI4,A0A0P0VUB0 A0A0P0VUI4_ORYSJ,A0A0P0VUB0_ORYSJ Os03g0201500 OSNPB_030201500,Os03g0201901 OSNPB_030201901 ENOG411DT4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease T2 family Os01g0897300 protein (cDNA clone:001-208-B08, full insert sequence),Os01g0897300 protein B7EZ16,Q0JGX7 B7EZ16_ORYSJ,Q0JGX7_ORYSJ Os01g0897300 OSNPB_010897300,Os01g0897300 Os01g0897300 OSNPB_010897300 ENOG411DT4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain OSJNBa0058K23.6 protein (Os04g0618600 protein) Q7FA23 Q7FA23_ORYSJ Os04g0618600 Os04g0618600 OsJ_16185 OSJNBa0058K23.6 OSNPB_040618600 ENOG411DT4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Glutathione S-transferase GSTU6, putative, expressed (Os10g0529700 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU8) (cDNA clone:002-113-D07, full insert sequence),Glutathione S-transferase GSTU6, putative, expressed (Os10g0529500 protein) (Putative glutathione S-transferase) (cDNA, clone: J100065O13, full insert sequence) Q945X0,Q8S710 Q945X0_ORYSJ,Q8S710_ORYSJ Os10g0529700 LOC_Os10g38610 OsJ_32237 OSJNBa0034L04.4 OSJNBb0038A07.6 OSNPB_100529700,Os10g0529500 LOC_Os10g38600 Os10g0529500 OsJ_32236 OSJNBa0034L04.17 OSJNBb0038A07.30 OSNPB_100529500 ENOG411DT4M APXT,APXS,TAPX,SAPX Q42593,Q42592,A0A1P8APU0,F4JFY5,F4JFY4 APXT_ARATH,APXS_ARATH,A0A1P8APU0_ARATH,F4JFY5_ARATH,F4JFY4_ARATH L-ascorbate peroxidase T, chloroplastic (EC 1.11.1.11) (Thylakoid-bound ascorbate peroxidase) (AtAPx06) (tAPX),L-ascorbate peroxidase S, chloroplastic/mitochondrial (EC 1.11.1.11) (Stromal ascorbate peroxidase) (AtAPx05) (sAPX),Thylakoidal ascorbate peroxidase,Stromal ascorbate peroxidase Elevated hydrogen peroxide levels under photooxidative stress-S. Shigeoka-2009 FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ARA:AT1G77490-MONOMER;,ARA:AT4G08390-MONOMER; 1.11.1.11; 1.11.1.11 46092,40407,45644,40279,37416 L-ascorbate peroxidase T, chloroplastic (EC 1.11.1.11) (Thylakoid-bound ascorbate peroxidase) (AtAPx06) (tAPX),L-ascorbate peroxidase S, chloroplastic/mitochondrial (EC 1.11.1.11) (Stromal ascorbate peroxidase) (AtAPx05) (sAPX),Thylakoidal ascorbate peroxidase,Stromal ascorbate peroxidase chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; cellular response to oxidative stress [GO:0034599]; chloroplast-nucleus signaling pathway [GO:0010019]; cold acclimation [GO:0009631]; hydrogen peroxide catabolic process [GO:0042744]; hydrogen peroxide mediated signaling pathway [GO:0071588]; response to reactive oxygen species [GO:0000302],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrion [GO:0005739]; cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to cytokinin [GO:0009735]; response to reactive oxygen species [GO:0000302],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979],heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Down-regulated during leaf senescence. {ECO:0000269|PubMed:16034597}. locus:2204735;,locus:2137435; AT1G77490,AT4G08390 L-ascorbate peroxidase Probable L-ascorbate peroxidase 8, chloroplastic (EC 1.11.1.11) (OsAPx8),Probable L-ascorbate peroxidase 7, chloroplastic (EC 1.11.1.11) (OsAPx7),Os02g0553200 protein (Fragment) Q69SV0,Q7XJ02,A0A0P0VK76 APX8_ORYSJ,APX7_ORYSJ,A0A0P0VK76_ORYSJ APX8 Os02g0553200 LOC_Os02g34810 P0470G10.5,APX7 Os04g0434800 LOC_Os04g35520 OsJ_14879 OSJNBb0086G13.10,Os02g0553200 OSNPB_020553200 FUNCTION: Involved in defense response and tolerance to the bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo). Plays an important role in hydrogen peroxide removal during infection by Xoo. Involved in response to abiotic stress. Plays a role in hydrogen peroxide removal durings salt stress. {ECO:0000269|PubMed:27185545}.,FUNCTION: Plays a key role in hydrogen peroxide removal. {ECO:0000250}. MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+) (By similarity). Plants over-expressing APX8 exhibit increased tolerance to the bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo). Plants silencing APX8 show increased sensitivity to Xoo (PubMed:27185545). {ECO:0000250, ECO:0000269|PubMed:27185545}.,MISCELLANEOUS: Binds one cation per subunit; probably K(+), but might also be Ca(2+). {ECO:0000250}. ENOG411DT4N NAR1 Q94CL6 NAR1_ARATH Protein NAR1 (Nuclear architecture related 1) (Protein GROWTH AT DIFFERENT OXYGEN LEVELS INFLUENCES MORPHOGENESIS) ([FeFe]-hydrogenase-like protein GOLLUM) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous (PubMed:23104832, PubMed:23734982, PubMed:23639116). {ECO:0000269|PubMed:23104832, ECO:0000269|PubMed:23639116, ECO:0000269|PubMed:23734982}. FUNCTION: Essential component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery (PubMed:23104832). Required for the maturation of extramitochondrial Fe/S proteins (By similarity). Required for expression of the imprinted FWA gene, for seed development and is involved in the oxidative stress response in vegetative tissues (PubMed:23734982). Involved in the regulation of cell size, ploidy and cell cycle progression (PubMed:23639116). Required for growth under normoxic conditions and necessary for recovery after hypoxic treatment but its action is reactive oxygen species (ROS) independent (PubMed:23639116). {ECO:0000250|UniProtKB:Q9H6Q4, ECO:0000269|PubMed:23104832, ECO:0000269|PubMed:23639116, ECO:0000269|PubMed:23734982}. MISCELLANEOUS: Coordinates probably two (Fe-S) clusters with different magnetic properties (PubMed:18329103). Knockdown mutants have a dwarf phenotype, but are indistinguishable from wild type under hypoxic conditions (PubMed:18329103, PubMed:23639116). {ECO:0000269|PubMed:18329103, ECO:0000269|PubMed:23639116}. 52504 Protein NAR1 (Nuclear architecture related 1) (Protein GROWTH AT DIFFERENT OXYGEN LEVELS INFLUENCES MORPHOGENESIS) ([FeFe]-hydrogenase-like protein GOLLUM) cytosol [GO:0005829]; nucleus [GO:0005634]; 4 iron, 4 sulfur cluster binding [GO:0051539]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; NADH dehydrogenase activity [GO:0003954]; response to oxygen levels [GO:0070482] DEVELOPMENTAL STAGE: Expressed throughout plant development. {ECO:0000269|PubMed:23734982}. TISSUE SPECIFICITY: Expressed in developing tissues, including shoot apex, young leaves, vascular tissues, root tips, pedicels, carpels and developing seeds. {ECO:0000269|PubMed:23639116, ECO:0000269|PubMed:23734982}. locus:2130634; AT4G16440 Cytosolic Fe-S cluster assembly factor Narf, putative, expressed (Os03g0748700 protein) (Putative hydrogenase) Q10CV7 Q10CV7_ORYSJ Os03g0748700 OSJNBa0069E14.4 LOC_Os03g53750 Os03g0748700 OSNPB_030748700 ENOG411DT40 MEC18.18 Q9LHL7,F4J8L7 Q9LHL7_ARATH,F4J8L7_ARATH Aha1 domain-containing protein (Uncharacterized protein T21B14.13),Aha1 domain-containing protein 40185,35795 Aha1 domain-containing protein (Uncharacterized protein T21B14.13),Aha1 domain-containing protein cytosol [GO:0005829]; ATPase activator activity [GO:0001671]; chaperone binding [GO:0051087]; response to stress [GO:0006950],ATPase activator activity [GO:0001671]; chaperone binding [GO:0051087]; response to stress [GO:0006950] locus:2088649; AT3G12050 Activator of 90 kDa heat shock protein ATPase Os08g0464000 protein (Putative activator of 90 kDa heat shock protein ATPase homolog 1) (cDNA clone:001-024-A01, full insert sequence) (cDNA clone:J033099D06, full insert sequence) Q6YUA7 Q6YUA7_ORYSJ Os08g0464000 B1111C03.37 B1116H04.25 OSNPB_080464000 ENOG411DT42 MHK10.4,MNL12.5 A0A1P8B2E0,Q9SLC7,F4J3H8,F4K4M9,A0A1I9LP89 A0A1P8B2E0_ARATH,Q9SLC7_ARATH,F4J3H8_ARATH,F4K4M9_ARATH,A0A1I9LP89_ARATH Nucleolar protein gar2-like protein,Nucleolar protein gar2-like protein (Uncharacterized protein At2g42320),Nucleolar-like protein,EEIG1/EHBP1 protein amino-terminal domain protein 54450,74212,74810,94440,59975 Nucleolar protein gar2-like protein,Nucleolar protein gar2-like protein (Uncharacterized protein At2g42320),Nucleolar-like protein,EEIG1/EHBP1 protein amino-terminal domain protein nuclear pore inner ring [GO:0044611]; structural constituent of nuclear pore [GO:0017056]; nuclear pore organization [GO:0006999] locus:2053834;,locus:2076601;,locus:2169293; AT2G42320,AT3G57780,AT5G43230 Inherit from NOG: Nucleolar protein Os08g0505200 protein,Os09g0487200 protein Q6Z3T4,Q0J0R3 Q6Z3T4_ORYSJ,Q0J0R3_ORYSJ Os08g0505200 OJ1134_H03.19 OsJ_27864 OSJNBa0025J22.9 OSNPB_080505200,Os09g0487200 Os09g0487200 OsJ_29823 OSNPB_090487200 ENOG411DT43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q651N3 Q651N3_ORYSJ Os09g0524300 Os09g0524300 OSJNBa0047P18.14 OSNPB_090524300 ENOG411DT44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like Flavin-containing monooxygenase (EC 1.-.-.-) Q10RE2 Q10RE2_ORYSJ Os03g0162000 NAL7 LOC_Os03g06654 Os03g0162000 OSNPB_030162000 ENOG411DT45 MNF13.4 Q84JC0,A0A1P8BB31,A0A1P8BB29,F4KHE6 RRP8_ARATH,A0A1P8BB31_ARATH,A0A1P8BB29_ARATH,F4KHE6_ARATH Ribosomal RNA-processing protein 8 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein FUNCTION: Probable methyltransferase required to silence rDNA. {ECO:0000250}. 2.1.1.- 32760,31411,35647,34297 Ribosomal RNA-processing protein 8 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chromatin silencing complex [GO:0005677]; nucleolus [GO:0005730]; rDNA heterochromatin [GO:0033553]; methylated histone binding [GO:0035064]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; chromatin silencing at rDNA [GO:0000183]; covalent chromatin modification [GO:0016569]; rRNA processing [GO:0006364]; transcription, DNA-templated [GO:0006351],nucleolus [GO:0005730]; methyltransferase activity [GO:0008168] locus:2168763; AT5G40530 Ribosomal RNA-processing protein Os02g0593900 protein Q0DZX1 Q0DZX1_ORYSJ Os02g0593900 Os02g0593900 OsJ_07349 OSNPB_020593900 ENOG411DT46 Q8GWK3,F4I3S6,F4I3S4 Q8GWK3_ARATH,F4I3S6_ARATH,F4I3S4_ARATH At1g63855 (Putative methyltransferase family protein) (Uncharacterized protein At1g63855),Putative methyltransferase family protein 17654,12285,21602 At1g63855 (Putative methyltransferase family protein) (Uncharacterized protein At1g63855),Putative methyltransferase family protein methyltransferase activity [GO:0008168] locus:504956172; AT1G63855 Putative methyltransferase NA NA NA NA NA NA NA ENOG411DT47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os06g0597800 protein (cDNA clone:J013014J20, full insert sequence) Q0DB68 Q0DB68_ORYSJ Os06g0597800 Os06g0597800 OsJ_21871 OSNPB_060597800 ENOG411DT48 ABCC1,ABCD1 Q94FB9,F4JJ28,F4JJ27 AB1D_ARATH,F4JJ28_ARATH,F4JJ27_ARATH ABC transporter D family member 1 (ABC transporter ABCD.1) (AtABCD1) (EC 3.6.3.47) (Peroxisomal ABC transporter 1) (AtPXA1) (Protein ACETATE NON-UTILIZING 2) (Protein COMATOSE) (Protein PEROXISOME DEFECTIVE 3) (Ped3p),Peroxisomal ABC transporter 1 DISRUPTION PHENOTYPE: Impaired germination after imbibition, rescued by sucrose treatment. Resistance to FAc, IBA and 2,4-DB. Compromised ability to convert acetate into soluble carbohydrate. Defective in lipid mobilization and accumulate acyl CoAs. Poor initiation of lateral root formation and smaller rosettes with fewer leaves than in wild-type. Crinkled and waxy leaves. {ECO:0000269|PubMed:10934020, ECO:0000269|PubMed:11706205, ECO:0000269|PubMed:11828016, ECO:0000269|PubMed:12065405, ECO:0000269|PubMed:14963767, ECO:0000269|PubMed:16844736, ECO:0000269|PubMed:17322332, ECO:0000269|PubMed:17468211, ECO:0000269|PubMed:17581114, ECO:0000269|PubMed:9490742}. Same phenotype as cts-1.,Germination potential in mutant seeds was highly reduced in comparison with wild-type seeds. Germination rates reached a maximum of 3.2% after 15 days and thereafter did not increase during a 24-day period of imbibition whereas 100% of after ripened wild-type seeds completed germination within 7 days of the initiation of imbibition.,Inability to break down lipid bodies. Seedling lethal; Insensitive to IBA-B. Bartel-2001 FUNCTION: Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation. {ECO:0000269|PubMed:10934020, ECO:0000269|PubMed:11063705, ECO:0000269|PubMed:11706205, ECO:0000269|PubMed:11828016, ECO:0000269|PubMed:12065405, ECO:0000269|PubMed:14963767, ECO:0000269|PubMed:16844736, ECO:0000269|PubMed:17322332, ECO:0000269|PubMed:17468211, ECO:0000269|PubMed:17581114, ECO:0000269|PubMed:9490742}. ARA:AT4G39850-MONOMER; R-ATH-1369062;R-ATH-2046105;R-ATH-2046106;R-ATH-390247; 3.6.3.47; 3.6.3.47 149576,149704,151136 ABC transporter D family member 1 (ABC transporter ABCD.1) (AtABCD1) (EC 3.6.3.47) (Peroxisomal ABC transporter 1) (AtPXA1) (Protein ACETATE NON-UTILIZING 2) (Protein COMATOSE) (Protein PEROXISOME DEFECTIVE 3) (Ped3p),Peroxisomal ABC transporter 1 glyoxysomal membrane [GO:0046861]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; peroxisomal fatty-acyl-CoA transporter activity [GO:0005325]; lipid catabolic process [GO:0016042],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],glyoxysomal membrane [GO:0046861]; integral component of membrane [GO:0016021]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; fatty-acyl-CoA transport [GO:0015916]; lipid catabolic process [GO:0016042]; positive regulation of seed germination [GO:0010030]; ubiquinone biosynthetic process [GO:0006744] DEVELOPMENTAL STAGE: Levels increase transiently after germination, before and during radicle emergence, especially in darkness (at protein level). {ECO:0000269|PubMed:11828016, ECO:0000269|PubMed:12065405}. locus:2139990; AT4G39850 ABC transporter Os05g0107600 protein (Fragment),Os01g0966100 protein (Fragment) Q0DLD4,Q0JFR5,A0A0P0WHB7 Q0DLD4_ORYSJ,Q0JFR5_ORYSJ,A0A0P0WHB7_ORYSJ Os05g0107600 Os05g0107600 OSNPB_050107600,Os01g0966100 Os01g0966100 OSNPB_010966100,Os05g0107600 OSNPB_050107600 ENOG411DYIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain F-box domain containing protein, expressed (Os10g0142500 protein) Q7XGX7 Q7XGX7_ORYSJ Os10g0142500 LOC_Os10g05240 Os10g0142500 OSJNBa0034A02.9 OSNPB_100142500 ENOG411DYIS Q9STW2 Q9STW2_ARATH Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein AT4g24320) (Uncharacterized protein T22A6.150) 45690 Ubiquitin carboxyl-terminal hydrolase family protein (Uncharacterized protein AT4g24320) (Uncharacterized protein T22A6.150) hydrolase activity [GO:0016787] locus:2135972; AT4G24320 Plant organelle RNA recognition domain NA NA NA NA NA NA NA ENOG411DYIP CXE13 Q9SMM9 CXE13_ARATH Probable carboxylesterase 13 (AtCXE13) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT3G48700-MONOMER; 3.1.1.1 36100 Probable carboxylesterase 13 (AtCXE13) (EC 3.1.1.1) cytosol [GO:0005829]; carboxylic ester hydrolase activity [GO:0052689]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:14738307}. locus:2114480; AT3G48700 Carboxylesterase family Os09g0462100 protein (Putative PrMC3) (cDNA clone:J013168D07, full insert sequence) Q67IZ5 Q67IZ5_ORYSJ Os09g0462100 OSJNBa0054F02.43 OSNPB_090462100 ENOG411DYIV Q9C6L9,F4ICI7,F4ICI6 Q9C6L9_ARATH,F4ICI7_ARATH,F4ICI6_ARATH Plasma-membrane choline transporter family protein (Uncharacterized protein F2J7.7),Plasma-membrane choline transporter family protein 54535,34120,48041 Plasma-membrane choline transporter family protein (Uncharacterized protein F2J7.7),Plasma-membrane choline transporter family protein integral component of membrane [GO:0016021] locus:2031235; AT1G25500 CTL-like protein Choline transporter-like protein (Os02g0580100 protein),Os09g0123400 protein (Fragment) Q6EP45,A0A0N7KQD2 Q6EP45_ORYSJ,A0A0N7KQD2_ORYSJ Os02g0580100 Os02g0580100 B1267B06.27 OJ1115_A05.2 OsJ_07266 OSNPB_020580100,Os09g0123400 OSNPB_090123400 ENOG411DYIT MYB4R1 Q9LV31,F4J7J6,F4J7J5,A0A1I9LT55 Q9LV31_ARATH,F4J7J6_ARATH,F4J7J5_ARATH,A0A1I9LT55_ARATH Myb domain protein 4r1 (Putative transcription factor),Myb domain protein 4r1 96084,72601,91316,78290 Myb domain protein 4r1 (Putative transcription factor),Myb domain protein 4r1 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355],DNA binding [GO:0003677] locus:2092687; AT3G18100 Transcription factor Os07g0137000 protein (Fragment),Os07g0136800 protein (Fragment),Os07g0139500 protein Q0D8Q7,C7J522,A0A0P0X263 Q0D8Q7_ORYSJ,C7J522_ORYSJ,A0A0P0X263_ORYSJ Os07g0137000 Os07g0137000 OSNPB_070137000,Os07g0136800 Os07g0136800 OSNPB_070136800,Os07g0139500 OSNPB_070139500 ENOG411DYIZ KIN4C,MSL3.50 F4K0J3,A0A1P8BGU4 KN4C_ARATH,A0A1P8BGU4_ARATH Kinesin-like protein KIN-4C (AtKINESIN-4C),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:25600279}. FUNCTION: Kinesin-like motor protein involved in the control of the oriented deposition of cellulose microfibrils. {ECO:0000250|UniProtKB:Q8GS71}. R-ATH-6811434;R-ATH-983189; 145364,149684 Kinesin-like protein KIN-4C (AtKINESIN-4C),P-loop containing nucleoside triphosphate hydrolases superfamily protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; cell wall organization [GO:0071555]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2173537; AT5G60930 Chromosome-associated kinesin Kinesin-like protein KIN-4C B9F2Y7 KN4C_ORYSJ KIN4C Os02g0742800/Os02g0742900 LOC_Os02g50910 OJ1734_E02.4/OJ1734_E02.5 OsJ_08347 P0585G03.27/P0585G03.28 FUNCTION: Microtubule-dependent motor protein involved in the control of the oriented deposition of cellulose microfibrils. {ECO:0000250|UniProtKB:Q6YUL8}. ENOG411DYIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Snf7 Os11g0123500 protein (SNF7 family protein, expressed),Os12g0121400 protein (SNF7 family protein, expressed) Q2RB64,Q2QYF7 Q2RB64_ORYSJ,Q2QYF7_ORYSJ LOC_Os11g03060 Os11g0123500 OsJ_32766 OSNPB_110123500,Os12g0121400 LOC_Os12g02830 Os12g0121400 OsJ_35039 OSNPB_120121400 ENOG411DYIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin carboxyl-terminal hydrolase Ubiquitinyl hydrolase 1 (EC 3.4.19.12),Ubiquitinyl hydrolase 1 (EC 3.4.19.12) (Fragment),Os08g0527800 protein Q6ZKX9,Q0J4A0,Q6ZIC7,Q0J492,A0A0P0XI69,A0A0P0XJI7,A0A0P0XII6,A0A0P0XIN9 Q6ZKX9_ORYSJ,Q0J4A0_ORYSJ,Q6ZIC7_ORYSJ,Q0J492_ORYSJ,A0A0P0XI69_ORYSJ,A0A0P0XJI7_ORYSJ,A0A0P0XII6_ORYSJ,A0A0P0XIN9_ORYSJ Os08g0527200 OJ1014_E06.16 OsJ_28019 OSNPB_080527200,Os08g0527100 Os08g0527100 OsJ_28018 OSNPB_080527100,Os08g0527900 OJ1014_E06.24 OJ1770_H02.1 OsJ_28026 OSNPB_080527900,Os08g0528000 Os08g0528000 OsJ_28027 OSNPB_080528000,Os08g0527600 OSNPB_080527600,Os08g0528100 OSNPB_080528100,Os08g0527400 OSNPB_080527400,Os08g0527800 OSNPB_080527800 ENOG411DYIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily OSJNBa0043A12.2 protein (Os04g0667400 protein) Q7XR83 Q7XR83_ORYSJ Os04g0667400 OsJ_16545 OSJNBa0043A12.2 OSNPB_040667400 ENOG411DYIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_10 Os01g0134900 protein B9EZD5 B9EZD5_ORYSJ Os01g0134900 OsJ_00271 OSNPB_010134900 ENOG411DYIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os07g0451300 protein (Putative Cytochrome P450 77A3) (cDNA clone:002-183-D12, full insert sequence) Q7EY63 Q7EY63_ORYSJ OSJNBb0062P14.106 Os07g0451300 OSJNBb0015I22.134 OSNPB_070451300 ENOG411DYIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6EQJ8 Q6EQJ8_ORYSJ Os02g0236800 Os02g0236800 OJ1077_A12.26 OSJNBb0006L10.1 OSNPB_020236800 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DYID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA multicellular organismal development Transcription factor PCF8 Q2QM59 PCF8_ORYSJ PCF8 Os12g0616400 LOC_Os12g42190 FUNCTION: Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. ENOG411DYIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD binding domain NA NA NA NA NA NA NA ENOG411DYIN TIP2-1 Q41951,Q9M818 TIP21_ARATH,Q9M818_ARATH Aquaporin TIP2-1 (Delta-tonoplast intrinsic protein) (Delta-TIP) (Tonoplast intrinsic protein 2-1) (AtTIP2;1) [Cleaved into: Aquaporin TIP2-1, N-terminally processed],Aquaporin, putative (Aquaporin-like superfamily protein) FUNCTION: Aquaporin required to facilitate the transport of water from the vacuolar compartment to the cytoplasm. Does not promote glycerol permability. Its function is impaired by Hg(2+). Transports urea in yeast cells and Xenopus laevis oocytes in a pH-independent manner. Transports methylammonium or ammonium in yeast cells and Xenopus laevis oocytes, preferentially at high medium pH. May participate in vacuolar compartmentation and detoxification of ammonium. {ECO:0000269|PubMed:14576283, ECO:0000269|PubMed:15665250, ECO:0000269|PubMed:8624437}. R-ATH-432047; 25027,12956 Aquaporin TIP2-1 (Delta-tonoplast intrinsic protein) (Delta-TIP) (Tonoplast intrinsic protein 2-1) (AtTIP2;1) [Cleaved into: Aquaporin TIP2-1, N-terminally processed],Aquaporin, putative (Aquaporin-like superfamily protein) cell wall [GO:0005618]; central vacuole [GO:0042807]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; Golgi apparatus [GO:0005794]; integral component of plasma membrane [GO:0005887]; plant-type cell wall [GO:0009505]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; protein storage vacuole [GO:0000326]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; methylammonium transmembrane transporter activity [GO:0015200]; water channel activity [GO:0015250]; water transport [GO:0006833],central vacuole [GO:0042807]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220] DEVELOPMENTAL STAGE: Starts to be expressed in seedlings from 2 days ays after germination. {ECO:0000269|PubMed:14576283}. TISSUE SPECIFICITY: Strongly expressed in shoot, rosette, bolt and flowers. Also expressed in roots, flower buds and above ground. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:8624437}. locus:2094977;,locus:2037447; AT3G16240,AT1G52180 Aquaporin Probable aquaporin TIP2-2 (Tonoplast intrinsic protein 2-2) (OsTIP2;2),Os06g0336200 protein Q5Z6F0,A0A0P0WWJ8 TIP22_ORYSJ,A0A0P0WWJ8_ORYSJ TIP2-2 Os06g0336200 LOC_Os06g22960 OsJ_020360 OSJNBa0012F14.45-1 P0427E01.5-1,Os06g0336200 OSNPB_060336200 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DYIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transmembrane and coiled-coil domain-containing protein Expressed protein (Os03g0112800 protein) (cDNA clone:J023105E01, full insert sequence),Os10g0512100 protein Q10SS2,Q7XCX3 Q10SS2_ORYSJ,Q7XCX3_ORYSJ LOC_Os03g02170 Os03g0112800 OsJ_09144 OSNPB_030112800,Os10g0512100 LOC_Os10g36830 Os10g0512100 OsJ_32136 OSNPB_100512100 ENOG411DYI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411DYI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Bric-a-Brac Tramtrack Broad Complex BTB domain with Meprin and TRAF Homology MATH domain BTB/POZ domain containing protein, expressed (Os10g0427300 protein) (cDNA clone:J023041D04, full insert sequence),BTB/POZ domain containing protein, expressed (Os10g0427300 protein),Os10g0428900 protein Q337Y7,Q337Y6,A0A0P0XUD9 Q337Y7_ORYSJ,Q337Y6_ORYSJ,A0A0P0XUD9_ORYSJ Os10g0427300 LOC_Os10g29180 OSNPB_100427300,Os10g0428900 OSNPB_100428900 ENOG411DYI0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein Os01g0838900 protein (cDNA clone:J033039F18, full insert sequence) Q943M0 Q943M0_ORYSJ Os01g0838900 OsJ_04014 OSNPB_010838900 P0031D11.23 ENOG411DYI1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 NA NA NA NA NA NA NA ENOG411DYI6 PER72 Q9FJZ9 PER72_ARATH Peroxidase 72 (Atperox P72) (EC 1.11.1.7) (ATP6a) (PRXR8) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G66390-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37427 Peroxidase 72 (Atperox P72) (EC 1.11.1.7) (ATP6a) (PRXR8) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; lignin biosynthetic process [GO:0009809]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Slightly expressed in roots. {ECO:0000269|Ref.7}. locus:2154925; AT5G66390 peroxidase Peroxidase (EC 1.11.1.7) Q9LI45,Q0JM38 Q9LI45_ORYSJ,Q0JM38_ORYSJ prx3 Os01g0263300 OsJ_01194 OSNPB_010263300 P0453A06.5,Os01g0543100 Os01g0543100 OSNPB_010543100 ENOG411DYI4 Q9FZJ7,F4HSW1,F4HSW0,A8MQS1 Q9FZJ7_ARATH,F4HSW1_ARATH,F4HSW0_ARATH,A8MQS1_ARATH At1g27385 (F17L21.17) (Phosphoribosylformylglycinamidine synthase) (Uncharacterized protein At1g27385/F17L21.17),Phosphoribosylformylglycinamidine synthase 22057,25242,28097,21928 At1g27385 (F17L21.17) (Phosphoribosylformylglycinamidine synthase) (Uncharacterized protein At1g27385/F17L21.17),Phosphoribosylformylglycinamidine synthase locus:505006149; AT1G27385 Protein of unknown function (DUF493) Os02g0507400 protein (cDNA clone:001-104-E11, full insert sequence) (cDNA clone:J013078O19, full insert sequence) (cDNA clone:J023043G03, full insert sequence),Os02g0507400 protein (Fragment),Os04g0386500 protein (Fragment) Q6K2H3,A0A0P0VJH9,A0A0P0W9X9 Q6K2H3_ORYSJ,A0A0P0VJH9_ORYSJ,A0A0P0W9X9_ORYSJ P0047E05.32-1 Os02g0507400 OSJNBa0052M16.5-1 OSNPB_020507400,Os02g0507400 OSNPB_020507400,Os04g0386500 OSNPB_040386500 ENOG411DYI5 O22826 O22826_ARATH At2g43770 (Putative splicing factor) (Transducin/WD40 repeat-like superfamily protein) R-ATH-72163;R-ATH-72165; 37886 At2g43770 (Putative splicing factor) (Transducin/WD40 repeat-like superfamily protein) Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2043929; AT2G43770 U5 small nuclear ribonucleoprotein 40 kDa Os06g0653800 protein (Putative U5 snRNP-specific 40 kDa protein) (cDNA clone:006-305-A11, full insert sequence) (cDNA clone:J033133P19, full insert sequence) Q67WC9 Q67WC9_ORYSJ Os06g0653800 OSJNBa0085J13.21 OSNPB_060653800 P0709F06.4 ENOG411DYI8 MJB20.10 Q9SHL4,O81784,Q9FKY2 Q9SHL4_ARATH,O81784_ARATH,Q9FKY2_ARATH Uncharacterized protein At2g17540,PHD finger-like protein (Uncharacterized protein AT4g35510) (Uncharacterized protein F8D20.20),Uncharacterized protein At5g66000 29419,35965,22731 Uncharacterized protein At2g17540,PHD finger-like protein (Uncharacterized protein AT4g35510) (Uncharacterized protein F8D20.20),Uncharacterized protein At5g66000 locus:2053873;,locus:2127913;,locus:2156887; AT2G17540,AT4G35510,AT5G66000 NA NA NA NA NA NA NA NA ENOG411DYI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os07g0481700 protein (Serine/threonine kinase-like protein),Os07g0481500 protein,Os07g0482850 protein,Os07g0492900 protein,Os07g0482700 protein,Os07g0481600 protein,Os07g0492966 protein,Os09g0331300 protein Q84YU9,A0A0P0X5V7,A0A0N7KNF8,A0A0N7KNG7,A0A0P0X5X9,A0A0N7KNF7,A0A0P0X6A0,A0A0P0XKS6 Q84YU9_ORYSJ,A0A0P0X5V7_ORYSJ,A0A0N7KNF8_ORYSJ,A0A0N7KNG7_ORYSJ,A0A0P0X5X9_ORYSJ,A0A0N7KNF7_ORYSJ,A0A0P0X6A0_ORYSJ,A0A0P0XKS6_ORYSJ P0045A07.108 Os07g0481700 OSNPB_070481700,Os07g0481500 OSNPB_070481500,Os07g0482850 OSNPB_070482850,Os07g0492900 OSNPB_070492900,Os07g0482700 OSNPB_070482700,Os07g0481600 OSNPB_070481600,Os07g0492966 OSNPB_070492966,Os09g0331300 OSNPB_090331300 ENOG411E6T8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome b-c1 complex subunit NA NA NA NA NA NA NA ENOG411E6T5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0565800 protein (cDNA clone:001-107-G10, full insert sequence) Q7XIJ8 Q7XIJ8_ORYSJ OJ1773_H01.114 Os07g0565800 OSNPB_070565800 ENOG411E6T4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6T6 T31P16_200,MXK3.28 Q9LX09,Q9LV76 Q9LX09_ARATH,Q9LV76_ARATH At5g10210 (Nitric oxide synthase-interacting protein) (Uncharacterized protein T31P16_200),At5g65030 (Nitric oxide synthase-interacting protein) 22577,23099 At5g10210 (Nitric oxide synthase-interacting protein) (Uncharacterized protein T31P16_200),At5g65030 (Nitric oxide synthase-interacting protein) locus:2184093;,locus:2177724; AT5G10210,AT5G65030 NA NA NA NA NA NA NA NA ENOG411E6TY ABCI16 A0A1P8B2E8,F4IQ31,F4IQ30 A0A1P8B2E8_ARATH,F4IQ31_ARATH,F4IQ30_ARATH Transmembrane protein 21380,18861,28087 Transmembrane protein integral component of membrane [GO:0016021] locus:2049796; AT2G37300 NA Expressed protein (Os03g0283400 protein) Q8H8U2 Q8H8U2_ORYSJ LOC_Os03g17500 Os03g0283400 OSNPB_030283400 ENOG411E6TX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EPIDERMAL PATTERNING FACTOR-like protein 2-like NA NA NA NA NA NA NA ENOG411E6TW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6TV BRK1 Q94JY4 BRK1_ARATH Protein BRICK 1 (AtBRK1) alterations in F-actin organization in expanding trichomes Abnormal trichome and pavement cell morphology-L. Smith-2006 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex. {ECO:0000269|PubMed:12015123}. 9481 Protein BRICK 1 (AtBRK1) cell periphery [GO:0071944]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; SCAR complex [GO:0031209]; identical protein binding [GO:0042802]; protein complex binding [GO:0032403]; actin filament polymerization [GO:0030041]; actin nucleation [GO:0045010]; cell morphogenesis [GO:0000902]; cell motility [GO:0048870]; protein oligomerization [GO:0051259]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed in roots, root hairs, hypocotyls, cotyledons, stems, leaves, trichomes, and flowers. {ECO:0000269|PubMed:15296760, ECO:0000269|PubMed:15316111}. locus:2066055; AT2G22640 Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2 3 complex Probable protein BRICK1 Q84VA7 BRK1_ORYSJ Os02g0829900 LOC_Os02g58320 OJ1124_D06.16 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. ENOG411E6TQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: guanine nucleotide-binding protein beta subunit-like protein NA NA NA NA NA NA NA ENOG411E6TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6TR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA wound-induced protein NA NA NA NA NA NA NA ENOG411E6TM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) Os07g0133900 protein Q6ZLL0 Q6ZLL0_ORYSJ Os07g0133900 OJ1118_D07.24 OsJ_22994 OSNPB_070133900 P0507H12.9 ENOG411E6TK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0318400 protein,Os02g0318200 protein,Os02g0317100 protein Q6EQY2,B9F5B4,A0A0P0VI66 Q6EQY2_ORYSJ,B9F5B4_ORYSJ,A0A0P0VI66_ORYSJ Os02g0318400 Os02g0318400 OJ1134_B09.13 OSJNBa0086N11.1 OSNPB_020318400,Os02g0318200 OsJ_06457 OSNPB_020318200,Os02g0317100 OSNPB_020317100 ENOG411E6TF VQ17 O48522 VQ17_ARATH VQ motif-containing protein 17 (AtVQ17) FUNCTION: May function as positive regulator of plant growth. {ECO:0000305|PubMed:22535423}. MISCELLANEOUS: Plants over-expressing VQ17 show stunted growth phenotype. {ECO:0000269|PubMed:22535423}. 19497 VQ motif-containing protein 17 (AtVQ17) nucleus [GO:0005634] locus:2060030; AT2G42140 VQ motif NA NA NA NA NA NA NA ENOG411E6TB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0369100 protein) (cDNA clone:002-175-D08, full insert sequence) Q10KV4 Q10KV4_ORYSJ LOC_Os03g25350 Os03g0369100 OsJ_10988 OSJNBa0013M12.16 OSNPB_030369100 ENOG411EF25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seed maturation protein NA NA NA NA NA NA NA ENOG411EF23 T5P19_170,NAC095 Q9LXY8,Q9FLM0 Q9LXY8_ARATH,Q9FLM0_ARATH NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (No apical meristem family protein) (Uncharacterized protein T5P19_170),At5g41090 (Emb|CAB88055.1) (NAC domain containing protein 95) (Uncharacterized protein At5g41090) 20379,24166 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (No apical meristem family protein) (Uncharacterized protein T5P19_170),At5g41090 (Emb|CAB88055.1) (NAC domain containing protein 95) (Uncharacterized protein At5g41090) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555]; transcription, DNA-templated [GO:0006351] locus:2102609;,locus:2163046; AT3G56520,AT5G41090 No apical meristem (NAM) family protein NA NA NA NA NA NA NA ENOG411E4ES MED28 Q9LFA5 MED28_ARATH Mediator of RNA polymerase II transcription subunit 28 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors. 17961 Mediator of RNA polymerase II transcription subunit 28 mediator complex [GO:0016592]; regulation of leaf senescence [GO:1900055]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2085156; AT3G52860 NA Os05g0154900 protein (cDNA clone:J023070E07, full insert sequence) Q5WMY5 Q5WMY5_ORYSJ Os05g0154900 OSNPB_050154900 P0431G05.3 ENOG411ECRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411ECRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA NA NA NA NA NA NA NA ENOG411ECRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SEC24 family member NA NA NA NA NA NA NA ENOG411ECRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox NA NA NA NA NA NA NA ENOG411ECRR dl3910c O23425 O23425_ARATH Calcium-dependent lipid-binding (CaLB domain) family protein (Uncharacterized protein AT4g15740) (Uncharacterized protein dl3910c) 52292 Calcium-dependent lipid-binding (CaLB domain) family protein (Uncharacterized protein AT4g15740) (Uncharacterized protein dl3910c) locus:2130674; AT4G15740 domain--containing protein NA NA NA NA NA NA NA ENOG411ECRS FH9,FH10 Q8GX37,Q9SRR2 FH9_ARATH,FH10_ARATH Formin-like protein 9 (AtFH9),Formin-like protein 10 (AtFH10) FUNCTION: Might be involved in the organization and polarity of the actin cytoskeleton. {ECO:0000250}. 87120,93012 Formin-like protein 9 (AtFH9),Formin-like protein 10 (AtFH10) integral component of membrane [GO:0016021]; actin binding [GO:0003779],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; actin binding [GO:0003779] locus:2156248;,locus:2079711; AT5G48360,AT3G07540 FH2 NA NA NA NA NA NA NA ENOG411ECRP Q9FKQ2 CAP18_ARATH Putative clathrin assembly protein At5g65370 33872 Putative clathrin assembly protein At5g65370 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; phospholipid binding [GO:0005543]; endocytosis [GO:0006897] locus:2168287; AT5G65370 ANTH domain NA NA NA NA NA NA NA ENOG411ECRQ ABCA4,ABCA6,ABCA5,ABCA10,ABCA12 Q9STT8,Q9STT6,Q9STT7,A0A1P8BFX9,A0A1P8BGL2,A0A1I9LRN8,A0A1I9LMY5 AB4A_ARATH,AB6A_ARATH,AB5A_ARATH,A0A1P8BFX9_ARATH,A0A1P8BGL2_ARATH,A0A1I9LRN8_ARATH,A0A1I9LMY5_ARATH ABC transporter A family member 4 (ABC transporter ABCA.4) (AtABCA4) (Putative ABC2 homolog 3),ABC transporter A family member 6 (ABC transporter ABCA.6) (AtABCA6) (Putative ABC2 homolog 5),ABC transporter A family member 5 (ABC transporter ABCA.5) (AtABCA5) (Putative ABC2 homolog 4),ABC2 homolog 14,ABC2 homolog 16,ABC2 homolog 5,ABC2 homolog 4 ARA:AT3G47760-MONOMER; R-ATH-1369062;R-ATH-382556; 105483,104598,105584,85910,81943,79092,102086 ABC transporter A family member 4 (ABC transporter ABCA.4) (AtABCA4) (Putative ABC2 homolog 3),ABC transporter A family member 6 (ABC transporter ABCA.6) (AtABCA6) (Putative ABC2 homolog 5),ABC transporter A family member 5 (ABC transporter ABCA.5) (AtABCA5) (Putative ABC2 homolog 4),ABC2 homolog 14,ABC2 homolog 16,ABC2 homolog 5,ABC2 homolog 4 integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; lipid transport [GO:0006869],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] AT3G47750,AT3G47770,AT3G47760 ABC transporter NA NA NA NA NA NA NA ENOG411ECRZ Q9LH95,F4J0F0 Q9LH95_ARATH,F4J0F0_ARATH Transmembrane protein, putative (DUF1216) (Uncharacterized protein At3g28790),Mucin-like protein, putative (DUF1216) 62766,55501 Transmembrane protein, putative (DUF1216) (Uncharacterized protein At3g28790),Mucin-like protein, putative (DUF1216) integral component of membrane [GO:0016021] locus:2098393;,locus:2098388; AT3G28790,AT3G28830 Protein of unknown function (DUF1216) NA NA NA NA NA NA NA ENOG411ECRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) OSJNBa0083I11.12 protein (Os04g0211900 protein) (cDNA clone:002-183-G11, full insert sequence) Q7XN32 Q7XN32_ORYSJ Os04g0211900 OsJ_13848 OSJNBa0083I11.12 OSNPB_040211900 ENOG411ECRF MXF12.40 Q9FID5,Q9FID6,A0A1P8BAR7,A0A1P8AVD0 Y5393_ARATH,Y5392_ARATH,A0A1P8BAR7_ARATH,A0A1P8AVD0_ARATH Probable receptor-like protein kinase At5g39030 (EC 2.7.11.-),Probable receptor-like protein kinase At5g39020 (EC 2.7.11.-),Protein kinase superfamily protein,Receptor-like kinase ARA:AT5G39030-MONOMER;,ARA:AT5G39020-MONOMER; 2.7.11.- 90671,90448,90080,19916 Probable receptor-like protein kinase At5g39030 (EC 2.7.11.-),Probable receptor-like protein kinase At5g39020 (EC 2.7.11.-),Protein kinase superfamily protein,Receptor-like kinase integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2177152;,locus:2177142; AT5G39030,AT5G39020 protein serine/threonine kinase activity NA NA NA NA NA NA NA ENOG411ECRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411ECRE FBX11,JAL38,JAL37 Q9SYD4,Q9M1A7,Q9M1A9 FBX11_ARATH,FBK75_ARATH,JAL37_ARATH Putative F-box only protein 11,Jacalin-related lectin 38 (F-box/kelch-repeat protein At3g59610),Jacalin-related lectin 37 44208,59914,52023 Putative F-box only protein 11,Jacalin-related lectin 38 (F-box/kelch-repeat protein At3g59610),Jacalin-related lectin 37 chloroplast [GO:0009507]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],carbohydrate binding [GO:0030246]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],carbohydrate binding [GO:0030246] locus:2008306;,locus:2097483;,locus:2097453; AT1G51320,AT3G59610,AT3G59590 F-box family protein jacalin lectin family NA NA NA NA NA NA NA ENOG411ECRB MYB57 Q9SSA1 MYB57_ARATH Transcription factor MYB57 (Myb-related protein 57) (AtMYB57) DISRUPTION PHENOTYPE: No visible phenotype. Myb21 and myb57 double mutant has an intermediate sterility phenotype and petals that grew to a final height parallel to the pistil. Myb24 and myb57 double mutant has petals that grew to a final height parallel to the pistil. Myb21, myb24 and myb57 triple mutant has a strongly reduced fertility and an arrested growth of the petals that never grew out of the sepals. {ECO:0000269|PubMed:19325888}. FUNCTION: Transcription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}. 23717 Transcription factor MYB57 (Myb-related protein 57) (AtMYB57) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; gibberellic acid mediated signaling pathway [GO:0009740]; jasmonic acid mediated signaling pathway [GO:0009867]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; stamen development [GO:0048443]; stamen filament development [GO:0080086]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed specifically in flowers. {ECO:0000269|PubMed:19325888}. locus:2084168; AT3G01530 myb domain protein 57 NA NA NA NA NA NA NA ENOG411ECRC BGLU47 Q9SVS1,A0A1P8B444 BGL47_ARATH,A0A1P8B444_ARATH Beta-glucosidase 47 (AtBGLU47) (EC 3.2.1.21),Beta-glucosidase 47 ARA:AT4G21760-MONOMER; R-ATH-189085; 3.2.1.21 61962,63108 Beta-glucosidase 47 (AtBGLU47) (EC 3.2.1.21),Beta-glucosidase 47 beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2119063; AT4G21760 Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411ECRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Involved in proper cytoplasmic distribution of mitochondria (By similarity) Os07g0421866 protein A0A0N7KNC0 A0A0N7KNC0_ORYSJ Os07g0421866 OSNPB_070421866 ENOG411ECRN BHLH157,LHL3 Q7XJU0,A0A1P8ASG5,F4I6T7,A8MSG2,F4KH37 LHWL2_ARATH,A0A1P8ASG5_ARATH,F4I6T7_ARATH,A8MSG2_ARATH,F4KH37_ARATH Transcription factor bHLH157 (BHLH transcription factor epsilon) (bHLH epsilon) (Basic helix-loop-helix protein 157) (AtbHLH157) (bHLH 157) (LONESOME HIGHWAY-like protein 2) (bHLH transcription factor bHLH157),Serine/threonine-protein kinase WNK (With No Lysine)-like protein FUNCTION: Transcription factor that may regulate root development. {ECO:0000250}. 59576,47563,56517,8527,7605 Transcription factor bHLH157 (BHLH transcription factor epsilon) (bHLH epsilon) (Basic helix-loop-helix protein 157) (AtbHLH157) (bHLH 157) (LONESOME HIGHWAY-like protein 2) (bHLH transcription factor bHLH157),Serine/threonine-protein kinase WNK (With No Lysine)-like protein cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; protein serine/threonine kinase activity [GO:0004674]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to auxin stimulus [GO:0071365]; intracellular signal transduction [GO:0035556]; male meiotic nuclear division [GO:0007140]; meiotic cell cycle [GO:0051321]; metaxylem development [GO:0090058]; protein phosphorylation [GO:0006468]; root development [GO:0048364]; seed development [GO:0048316]; transcription, DNA-templated [GO:0006351],kinase activity [GO:0016301]; protein dimerization activity [GO:0046983],cytosol [GO:0005829]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],kinase activity [GO:0016301] locus:1005716759;,locus:4010713968; AT1G64625,AT5G24352 transcription factor NA NA NA NA NA NA NA ENOG411ECRM F-ATMBP,MBP2 Q9SAV1,A0A1P8ARU9 JAL6_ARATH,A0A1P8ARU9_ARATH Myrosinase-binding protein 2 (Jacalin-related lectin 6) (Myrosinase-binding protein-like At1g52030) (MBP),Myrosinase-binding protein 2 68849,60601 Myrosinase-binding protein 2 (Jacalin-related lectin 6) (Myrosinase-binding protein-like At1g52030) (MBP),Myrosinase-binding protein 2 thioglucosidase complex [GO:0010169]; carbohydrate binding [GO:0030246]; thioglucosidase binding [GO:0010180]; cell adhesion [GO:0007155]; defense response [GO:0006952]; flower development [GO:0009908]; response to wounding [GO:0009611],carbohydrate binding [GO:0030246] TISSUE SPECIFICITY: Expressed in flowers. Detected mainly in ovules and styles of immature flowers, but also in pistils, styles, stamens, petals and embryos. Not detected in leaves. {ECO:0000269|PubMed:10682349, ECO:0000269|PubMed:11678272}. locus:2034081; AT1G52030 myrosinase-binding protein 2 NA NA NA NA NA NA NA ENOG411ECRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411ECRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os05g0537700 protein,Os05g0539300 protein,Os05g0539150 protein (Fragment) Q53WL8,Q53WK8,A0A0P0WPS2 Q53WL8_ORYSJ,Q53WK8_ORYSJ,A0A0P0WPS2_ORYSJ Os05g0537700 Os05g0537700 OsJ_19362 OSJNBa0052K01.3 OSNPB_050537700,Os05g0539300 OsJ_19374 OSJNBa0052K01.14 OSNPB_050539300,Os05g0539150 OSNPB_050539150 ENOG411ECR6 MXM12.10,MBD2.2 Q9SD97,Q9SD98,Q9SD99,Q9FMN6 Q9SD97_ARATH,Q9SD98_ARATH,Q9SD99_ARATH,Q9FMN6_ARATH HXXXD-type acyl-transferase family protein (N-hydroxycinnamoyl/benzoyltransferase-like protein),Anthranilate N-hydroxycinnamoyl/benzoyltransferase-like protein (HXXXD-type acyl-transferase family protein) (Proanthranilate N-benzoyltransferase-like protein) ARA:AT5G07870-MONOMER;,ARA:AT5G07860-MONOMER;,ARA:AT5G07850-MONOMER;,ARA:AT5G42830-MONOMER; 51738,50433,50758,50524 HXXXD-type acyl-transferase family protein (N-hydroxycinnamoyl/benzoyltransferase-like protein),Anthranilate N-hydroxycinnamoyl/benzoyltransferase-like protein (HXXXD-type acyl-transferase family protein) (Proanthranilate N-benzoyltransferase-like protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],cytosol [GO:0005829]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2142828;,locus:2142813;,locus:2142798;,locus:2160001; AT5G07870,AT5G07860,AT5G07850,AT5G42830 Transferase family NA NA NA NA NA NA NA ENOG411ECR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os07g0414900 protein (cDNA clone:J013159B11, full insert sequence),Os07g0414900 protein (Fragment) Q0D700,A0A0P0X509 Q0D700_ORYSJ,A0A0P0X509_ORYSJ Os07g0414900 Os07g0414900 OSNPB_070414900,Os07g0414900 OSNPB_070414900 ENOG411ECR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECR2 PER70 Q9FMI7 PER70_ARATH Peroxidase 70 (Atperox P70) (EC 1.11.1.7) (ATP45) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G64110-MONOMER; 1.11.1.7 36137 Peroxidase 70 (Atperox P70) (EC 1.11.1.7) (ATP45) extracellular region [GO:0005576]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2164431; AT5G64110 Peroxidase NA NA NA NA NA NA NA ENOG411ECR3 MYB34 O64399 MYB34_ARATH Transcription factor MYB34 (Myb-related protein 34) (AtMYB34) (Protein ALTERED TRYPTOPHAN REGULATION 1) (ATR1) DISRUPTION PHENOTYPE: No visible phenotype. Reduced indolic glucosinolate levels in adult leaves and loss of responses to brassinosteroids. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754}. Mutant plants show low level expression of a truncated RNA. Mutants are supersensitive to the toxic TRP analog 5MT and plants have reduced levels of indole glucosinolates. No obvious morphological phenotype detected. FUNCTION: Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. 32743 Transcription factor MYB34 (Myb-related protein 34) (AtMYB34) (Protein ALTERED TRYPTOPHAN REGULATION 1) (ATR1) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cellular response to sulfur starvation [GO:0010438]; defense response to insect [GO:0002213]; indole glucosinolate biosynthetic process [GO:0009759]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; transcription, DNA-templated [GO:0006351]; tryptophan biosynthetic process [GO:0000162] TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. locus:2173562; AT5G60890 myb domain protein 34 NA NA NA NA NA NA NA ENOG411ECR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411ECR1 TRP1 Q8L7L8 TRP1_ARATH Telomere repeat-binding protein 1 (AtTRP1) DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy. {ECO:0000269|PubMed:15364931}. FUNCTION: Binds specifically to the plant telomeric double-stranded DNA sequences 5'-GGTTTAG-3'. At least 4 repeats of telomeric sequences are required for binding. Induces DNA bending. 65036 Telomere repeat-binding protein 1 (AtTRP1) cytoplasm [GO:0005737]; membrane [GO:0016020]; nuclear membrane [GO:0031965]; nuclear telomere cap complex [GO:0000783]; plasma membrane [GO:0005886]; double-stranded telomeric DNA binding [GO:0003691]; ethylene-activated signaling pathway [GO:0009873]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and leaves. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}. locus:2148383; AT5G59430 SANT NA NA NA NA NA NA NA ENOG411ECR8 FRB1 Q9LFC6 Q9LFC6_ARATH At5g01100 (O-fucosyltransferase family protein) (Uncharacterized protein F7J8_80) FUNCTION: Glycosyltransferase required for normal cell adhesion and cell wall integrity. {ECO:0000269|PubMed:22916179}. 71307 At5g01100 (O-fucosyltransferase family protein) (Uncharacterized protein F7J8_80) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; regulation of plant-type cell wall organization or biogenesis [GO:0080157] locus:2150129; AT5G01100 GDP-fucose protein O-fucosyltransferase NA NA NA NA NA NA NA ENOG411EF2Y Q9FKH0 Q9FKH0_ARATH Transmembrane protein 28962 Transmembrane protein integral component of membrane [GO:0016021] locus:2151561; AT5G61490 NA NA NA NA NA NA NA NA ENOG411EF2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box protein interaction domain containing protein, expressed (Os10g0391200 protein) Q7XEZ8 Q7XEZ8_ORYSJ Os10g0391200 LOC_Os10g25210 Os10g0391200 OSJNBb0061I18.2 OSNPB_100391200 ENOG411EF2N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EF2K UBC31 Q9C8X7 UBC31_ARATH Probable ubiquitin-conjugating enzyme E2 31 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 31) (Ubiquitin carrier protein 31) FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000250|UniProtKB:P42743}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 17833 Probable ubiquitin-conjugating enzyme E2 31 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 31) (Ubiquitin carrier protein 31) vacuole [GO:0005773]; ATP binding [GO:0005524]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567] locus:2035967; AT1G36340 Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EF2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0292400 protein,Os01g0548900 protein (Fragment) A0A0P0XK55,A0A0P0V3V2 A0A0P0XK55_ORYSJ,A0A0P0V3V2_ORYSJ Os09g0292400 OSNPB_090292400,Os01g0548900 OSNPB_010548900 ENOG411EF2C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 67-dimethyl-8-ribityllumazine synthase NA NA NA NA NA NA NA ENOG411EF2B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1A1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Salt tolerance-like protein Os06g0713000 protein (Zinc finger protein) (cDNA clone:001-205-D08, full insert sequence) O82114 O82114_ORYSJ Os06g0713000 Os06g0713000 OJ1663_H12.37 OsJ_22640 OSNPB_060713000 P0712G01.12 ENOG411E1A0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os01g0720800 protein (Fragment) A0A0P0V7L4 A0A0P0V7L4_ORYSJ Os01g0720800 OSNPB_010720800 ENOG411E1A3 NPF4.5,NPF4.7,NPF4.6,AtNPF4.5,MQB2.30 Q8VYE4,Q9FM20,Q8H157,A0A1P8AT47,A0A1P8BC19 PTR12_ARATH,PTR54_ARATH,PTR19_ARATH,A0A1P8AT47_ARATH,A0A1P8BC19_ARATH Protein NRT1/ PTR FAMILY 4.5 (AtNPF4.5) (Protein ABA-IMPORTING TRANSPORTER 2),Protein NRT1/ PTR FAMILY 4.7 (AtNPF4.7),Protein NRT1/ PTR FAMILY 4.6 (AtNPF4.6) (Nitrate transporter 1.2) (Nitrate transporter NTL1) (Protein ABA-IMPORTING TRANSPORTER 1),Major facilitator superfamily protein DISRUPTION PHENOTYPE: Reduced effect of ABA on seed germination and postgermination growth and increased number of open stomata. {ECO:0000269|PubMed:22645333}. FUNCTION: Involved in abscisic acid transport. {ECO:0000269|PubMed:22645333}.,FUNCTION: Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport. Involved in (+)-abscisic acid (ABA) transport, but not in gibberellin, indole-3-acetic acid or jasmonic acid import. Mediates cellular ABA uptake. Nitrate does not compete with abscisic acid as a substrate of NPF4.6 (PubMed:24084651). {ECO:0000269|PubMed:10449574, ECO:0000269|PubMed:22645333, ECO:0000269|PubMed:24084651}. 62653,65243,63982,59138,58393 Protein NRT1/ PTR FAMILY 4.5 (AtNPF4.5) (Protein ABA-IMPORTING TRANSPORTER 2),Protein NRT1/ PTR FAMILY 4.7 (AtNPF4.7),Protein NRT1/ PTR FAMILY 4.6 (AtNPF4.6) (Nitrate transporter 1.2) (Nitrate transporter NTL1) (Protein ABA-IMPORTING TRANSPORTER 1),Major facilitator superfamily protein integral component of membrane [GO:0016021]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; abscisic acid transporter activity [GO:0090440]; symporter activity [GO:0015293]; abscisic acid transport [GO:0080168]; nitrate assimilation [GO:0042128]; regulation of stomatal movement [GO:0010119]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in root hairs and in epidermis of both root tips and mature regions of roots. Detected in shoots, stems, flowers, siliques and imbibed seeds. Expressed in vascular tissues in cotyledons, trus leaves, hypocotyls, roots and inflorescence stems. {ECO:0000269|PubMed:10449574, ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:22645333}. locus:2205769;,locus:2170683;,locus:2196739; AT1G27040,AT5G62730,AT1G69850 Nitrate transporter Os06g0581000 protein (Putative nitrate transporter NTL1) Q5VPM1 Q5VPM1_ORYSJ Os06g0581000 Os06g0581000 OSNPB_060581000 P0566A10.29 ENOG411E1AA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os02g0235900 protein,Os05g0287700 protein,Os01g0616666 protein A0A0P0VGV3,A0A0P0WK65,A0A0P0V5D2 A0A0P0VGV3_ORYSJ,A0A0P0WK65_ORYSJ,A0A0P0V5D2_ORYSJ Os02g0235900 OSNPB_020235900,Os05g0287700 OSNPB_050287700,Os01g0616666 OSNPB_010616666 ENOG411E1AV UKL5 Q9LTY6,A0A1I9LNB2,A0A1I9LNB3 UKL5_ARATH,A0A1I9LNB2_ARATH,A0A1I9LNB3_ARATH Uridine kinase-like protein 5 [Includes: Probable uridine kinase (UK) (EC 2.7.1.48); Probable uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase-like 5,Uridine kinase (EC 2.7.1.48) FUNCTION: Involved in the pyrimidine salvage pathway. {ECO:0000250, ECO:0000269|PubMed:19563437}. PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.; PATHWAY: Pyrimidine metabolism; CTP biosynthesis via salvage pathway; CTP from cytidine: step 1/3.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1.,PATHWAY: Pyrimidine metabolism; CTP biosynthesis via salvage pathway; CTP from cytidine: step 1/3. {ECO:0000256|RuleBase:RU003825}.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1. {ECO:0000256|RuleBase:RU003825}. ARA:AT3G27440-MONOMER; R-ATH-73614; 2.7.1.48; 2.4.2.9,2.7.1.48 52125,47326,47771 Uridine kinase-like protein 5 [Includes: Probable uridine kinase (UK) (EC 2.7.1.48); Probable uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase)],Uridine kinase-like 5,Uridine kinase (EC 2.7.1.48) cytosol [GO:0005829]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845]; uridine kinase activity [GO:0004849]; CTP salvage [GO:0044211]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097]; UMP salvage [GO:0044206],ATP binding [GO:0005524]; kinase activity [GO:0016301]; nucleoside metabolic process [GO:0009116],ATP binding [GO:0005524]; uridine kinase activity [GO:0004849]; CTP salvage [GO:0044211]; UMP salvage [GO:0044206] locus:2086691; AT3G27440 uridine kinase NA NA NA NA NA NA NA ENOG411E1AQ Q9C6P5,Q9C688 RAVL2_ARATH,RAVL3_ARATH AP2/ERF and B3 domain-containing transcription factor At1g50680 (RAV1-like ethylene-responsive transcription factor At1g50680),AP2/ERF and B3 domain-containing transcription factor At1g51120 (RAV1-like ethylene-responsive transcription factor At1g51120) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 38473,40307 AP2/ERF and B3 domain-containing transcription factor At1g50680 (RAV1-like ethylene-responsive transcription factor At1g50680),AP2/ERF and B3 domain-containing transcription factor At1g51120 (RAV1-like ethylene-responsive transcription factor At1g51120) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2015832;,locus:2026058; AT1G50680,AT1G51120 Transcription factor NA NA NA NA NA NA NA ENOG411E1AP TOL2 Q9LNC6 TOL2_ARATH TOM1-like protein 2 FUNCTION: Binds ubiquitin in vitro (PubMed:24316203). Might contribute to the loading of the ESCRT machinery (Probable). {ECO:0000269|PubMed:24316203, ECO:0000305|PubMed:16488176}. R-ATH-432720;R-ATH-5689901;R-ATH-6798695; 42797 TOM1-like protein 2 cytoplasm [GO:0005737]; membrane [GO:0016020]; ubiquitin binding [GO:0043130]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:24699223}. locus:2038545; AT1G06210 VHS domain-containing protein NA NA NA NA NA NA NA ENOG411E1AS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0784500 protein (Fragment),Os03g0784600 protein (Fragment) Q0DN00,A0A0P0W4F2 Q0DN00_ORYSJ,A0A0P0W4F2_ORYSJ Os03g0784500 Os03g0784500 OSNPB_030784500,Os03g0784600 OSNPB_030784600 ENOG411E8B3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411DWCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nodulation receptor Os07g0568100 protein (Putative nodulation receptor kinase) Q7F1I0 Q7F1I0_ORYSJ OJ1092_A07.125 Os07g0568100 OSNPB_070568100 ENOG411DWCX Q6NMH5,F4J2T0 Q6NMH5_ARATH,F4J2T0_ARATH At3g16760 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At3g16760),Tetratricopeptide repeat (TPR)-like superfamily protein 48829,46610 At3g16760 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At3g16760),Tetratricopeptide repeat (TPR)-like superfamily protein plasma membrane [GO:0005886] locus:2089353; AT3G16760 Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DWCY iqd2,T25B15_60,Iqd4 Q93ZH7,Q9FT53,F4IUJ7 Q93ZH7_ARATH,Q9FT53_ARATH,F4IUJ7_ARATH At5g03040/F15A17_70 (IQ-domain 2),IQ-domain 3 (Uncharacterized protein At3g52290) (Uncharacterized protein T25B15_60),IQ-domain 4 50463,48118,58278 At5g03040/F15A17_70 (IQ-domain 2),IQ-domain 3 (Uncharacterized protein At3g52290) (Uncharacterized protein T25B15_60),IQ-domain 4 plasma membrane [GO:0005886] locus:2143503;,locus:2100504;,locus:2066226; AT5G03040,AT3G52290,AT2G26410 IQ-domain Os05g0123200 protein (Putative SF16 protein) (cDNA clone:001-045-E09, full insert sequence),Os05g0123200 protein,Os01g0833800 protein (Putative SF16 protein),Os01g0833800 protein (cDNA clone:J013168C19, full insert sequence) Q75L83,Q0DL48,Q5QLD5,B7EKI0 Q75L83_ORYSJ,Q0DL48_ORYSJ,Q5QLD5_ORYSJ,B7EKI0_ORYSJ Os05g0123200 OJ1729_E02.11 OsJ_16949 OSNPB_050123200 P0008A07.3,Os05g0123200 Os05g0123200 OSNPB_050123200,P0460C04.27-1 Os01g0833800 OsJ_03977 OSNPB_010833800,Os01g0833800 OSNPB_010833800 ENOG411DWCR Q9FI58 Q9FI58_ARATH ARM repeat superfamily protein (At5g50900) 59270 ARM repeat superfamily protein (At5g50900) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2157358; AT5G50900 armadillo beta-catenin repeat family protein NA NA NA NA NA NA NA ENOG411DWCS CCR4 Q9FIJ6 ACCR4_ARATH Serine/threonine-protein kinase-like protein CCR4 (EC 2.7.11.1) (CRINKLY 4-related kinase 1) (AtCRK1) (Protein CRINKLY 4 RELATED 4) (AtCCR4) 2.7.11.1 83774 Serine/threonine-protein kinase-like protein CCR4 (EC 2.7.11.1) (CRINKLY 4-related kinase 1) (AtCRK1) (Protein CRINKLY 4 RELATED 4) (AtCCR4) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in roots, leaves, especially in trichomes, shoot apical meristems (SAM), and, to a lower extent, in floral buds. {ECO:0000269|PubMed:15549374}. locus:2160952; AT5G47850 Serine threonine-protein kinase-like protein OJ000114_01.11 protein (Os04g0439600 protein),Os11g0222000 protein (Protein kinase domain containing protein, expressed) Q7XQG6,Q2R8P3 Q7XQG6_ORYSJ,Q2R8P3_ORYSJ OJ000114_01.11 Os04g0439600 OSNPB_040439600,Os11g0222000 LOC_Os11g11490 Os11g0222000 OsJ_33409 OSNPB_110222000 ENOG411DWCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0503600 protein A0A0P0WC43 A0A0P0WC43_ORYSJ Os04g0503600 OSNPB_040503600 ENOG411DWCQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arsenical pump membrane protein Os02g0822100 protein (Putative arsenite transport subunit B) (cDNA clone:J013000A03, full insert sequence),Os02g0822100 protein Q6K6Z6,A0A0P0VRB8 Q6K6Z6_ORYSJ,A0A0P0VRB8_ORYSJ Os02g0822100 OJ1119_A01.16 OsJ_08920 OSNPB_020822100 P0474F11.31,Os02g0822100 OSNPB_020822100 ENOG411DWCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 Os08g0171800 protein (cDNA clone:J023003M02, full insert sequence) (cDNA clone:J023131J04, full insert sequence) Q6YYK3 Q6YYK3_ORYSJ Os08g0171800 OJ1590_E05.28 OSNPB_080171800 ENOG411DWCW BRIZ1 E5KGE0,A0A1P8AYR4,A0A1P8AYK4 E5KGE0_ARATH,A0A1P8AYR4_ARATH,A0A1P8AYK4_ARATH BRIZ1 (Zinc finger (Ubiquitin-hydrolase) domain-containing protein),Zinc finger (Ubiquitin-hydrolase) domain-containing protein growth arrest (embryos are slow to emerge from the seed coat; after emergence the embryos remain white with unexpanded cotyledons even after twelve days on GM media) Seedling lethal; Pale embryos; Delayed germination-J. Callis-2010 55215,45380,50864 BRIZ1 (Zinc finger (Ubiquitin-hydrolase) domain-containing protein),Zinc finger (Ubiquitin-hydrolase) domain-containing protein ubiquitin ligase complex [GO:0000151]; hydrolase activity [GO:0016787]; protein heterodimerization activity [GO:0046982]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; regulation of seed germination [GO:0010029],ubiquitin ligase complex [GO:0000151]; hydrolase activity [GO:0016787]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; regulation of seed germination [GO:0010029] locus:2060045; AT2G42160 Brca1-associated OSJNBa0010D21.6 protein (Os04g0648500 protein) (cDNA clone:J013057F24, full insert sequence) Q7XTV9 Q7XTV9_ORYSJ Os04g0648500 Os04g0648500 OsJ_16414 OSJNBa0010D21.6 OSNPB_040648500 ENOG411DWCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0436700 protein (Serine protease-like protein) (cDNA clone:J023058C13, full insert sequence) Q69LK8 Q69LK8_ORYSJ Os09g0436700 Os09g0436700 OJ1328_D07.4 OsJ_29496 OSNPB_090436700 ENOG411DWCU Q0V856,A0A1P8AW47 Q0V856_ARATH,A0A1P8AW47_ARATH At1g29320 (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein 52271,52342 At1g29320 (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; ribosomal large subunit biogenesis [GO:0042273] locus:2013678; AT1G29320 WD repeat-containing protein 74-like Os07g0506700 protein (cDNA clone:J033071L22, full insert sequence) Q0D674 Q0D674_ORYSJ Os07g0506700 Os07g0506700 OSNPB_070506700 ENOG411DWCJ Q3EDB8,Q9C965,Q8VY23 Q3EDB8_ARATH,Q9C965_ARATH,Q8VY23_ARATH E3 ubiquitin-protein ligase,AT1G80400 protein (Putative RING zinc finger protein) (Putative RING zinc finger protein; 53384-54880) (RING/U-box superfamily protein),C3H4 type zinc finger protein (Uncharacterized protein At4g32600) 20141,44551,49910 E3 ubiquitin-protein ligase,AT1G80400 protein (Putative RING zinc finger protein) (Putative RING zinc finger protein; 53384-54880) (RING/U-box superfamily protein),C3H4 type zinc finger protein (Uncharacterized protein At4g32600) integral component of membrane [GO:0016021]; ligase activity [GO:0016874],integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2196633;,locus:2034210;,locus:2125652; AT1G15590,AT1G80400,AT4G32600 E3 ubiquitin-protein ligase At4g11680-like Os05g0179000 protein (cDNA clone:J023110J02, full insert sequence),Os02g0787500 protein Q0DKA7,A0A0P0VQK4 Q0DKA7_ORYSJ,A0A0P0VQK4_ORYSJ Os05g0179000 Os05g0179000 OsJ_17331 OSNPB_050179000,Os02g0787500 OSNPB_020787500 ENOG411DWCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os03g0422800 protein (Fragment) A0A0N7KHG5 A0A0N7KHG5_ORYSJ Os03g0422800 OSNPB_030422800 ENOG411DWCH Q0WQL8 Q0WQL8_ARATH Transmembrane Fragile-X-F-associated protein (Uncharacterized protein At1g18470) 47700 Transmembrane Fragile-X-F-associated protein (Uncharacterized protein At1g18470) integral component of membrane [GO:0016021] AT1G18470 Transmembrane Fragile-X-F protein Os03g0706900 protein (Zinc finger family protein, putative, expressed) (cDNA clone:J013002N07, full insert sequence) Q10E70 Q10E70_ORYSJ Os03g0706900 LOC_Os03g49900 Os03g0706900 OsJ_12282 OSJNBb0022E02.2 OSNPB_030706900 ENOG411DWCI SOT11,SOT12,SOT1,SOT6,SOT8,SOT2,SOT5,AtSULT202B1 Q8RV79,P52839,Q9FG94,Q9M1V1,Q9FX56,Q9SD25,Q9M1V2,A0A1I9LRV6,A0A1I9LRV5 SOT11_ARATH,SOT12_ARATH,SOT1_ARATH,SOT6_ARATH,SOT8_ARATH,SOT2_ARATH,SOT5_ARATH,A0A1I9LRV6_ARATH,A0A1I9LRV5_ARATH Cytosolic sulfotransferase 11 (AtSOT11) (EC 2.8.2.-),Cytosolic sulfotransferase 12 (AtSOT12) (EC 2.8.2.-) (Sulfotransferase 1) (AtST1),Cytosolic sulfotransferase 1 (AtSOT1) (EC 2.8.2.-),Cytosolic sulfotransferase 6 (AtSOT6) (EC 2.8.2.-) (sulfotransferase 3b) (AtST3b),Cytosolic sulfotransferase 8 (AtSOT8) (EC 2.8.2.-) (Sulfotransferase 4b) (AtST4b),Putative cytosolic sulfotransferase 2 (AtSOT2) (EC 2.8.2.-),Cytosolic sulfotransferase 5 (AtSOT5) (EC 2.8.2.-) (Flavonoid 7-sulfotransferase 3a) (AtST3a),Sulfotransferase (EC 2.8.2.-) DISRUPTION PHENOTYPE: No effect on sensitivity to salicylic acid. {ECO:0000269|PubMed:20374532}.,DISRUPTION PHENOTYPE: Hypersensitivity to NaCl and ABA in seed germination, and to salicylic acid (SA) in seedling growth. {ECO:0000269|PubMed:20374532}. Germination sensitive to ABA and salt; Seedling growth sensitive to SA; Susceptible to bacterial infection-H. Shi-2010 FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. {ECO:0000250}.,FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the stereospecific sulfate conjugation of 24-epibrassinosteroids. Preferred substrates are 24-epicathasterone and 6-deoxo-24-epicathasterone. Low activity with 22-deoxy-24-epiteasterone. No activity with 24-epimers catasterone and brassinolide. Sulfonates salicylic acid. May be involved in detoxification. Enhances plant response to pathogen infection and contributes to long distance signaling in systemic acquired resistance (SAR). {ECO:0000269|PubMed:17039368, ECO:0000269|PubMed:20374532}.,FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. No activity with brassinosteroids. {ECO:0000269|PubMed:17039368}.,FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of flavones and flavonols. Strictly specific for the position 7. Substrate preference is kaempferol 3-sulfate > isorhamnetin > kaempferol. {ECO:0000269|PubMed:17095238}. ARA:AT2G03750-MONOMER;,ARA:AT2G03760-MONOMER;MetaCyc:AT2G03760-MONOMER;,ARA:AT5G43690-MONOMER;,ARA:AT3G45080-MONOMER;,ARA:AT1G13420-MONOMER;,ARA:AT3G45070-MONOMER; R-ATH-156584; 2.8.2.- 40838,37139,38186,38069,37709,7648,37502,38104,41205 Cytosolic sulfotransferase 11 (AtSOT11) (EC 2.8.2.-),Cytosolic sulfotransferase 12 (AtSOT12) (EC 2.8.2.-) (Sulfotransferase 1) (AtST1),Cytosolic sulfotransferase 1 (AtSOT1) (EC 2.8.2.-),Cytosolic sulfotransferase 6 (AtSOT6) (EC 2.8.2.-) (sulfotransferase 3b) (AtST3b),Cytosolic sulfotransferase 8 (AtSOT8) (EC 2.8.2.-) (Sulfotransferase 4b) (AtST4b),Putative cytosolic sulfotransferase 2 (AtSOT2) (EC 2.8.2.-),Cytosolic sulfotransferase 5 (AtSOT5) (EC 2.8.2.-) (Flavonoid 7-sulfotransferase 3a) (AtST3a),Sulfotransferase (EC 2.8.2.-) cytoplasm [GO:0005737]; sulfotransferase activity [GO:0008146],Golgi apparatus [GO:0005794]; brassinosteroid sulfotransferase activity [GO:0080118]; flavonoid sulfotransferase activity [GO:1990135]; sulfotransferase activity [GO:0008146]; brassinosteroid metabolic process [GO:0016131]; defense response [GO:0006952]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; sulfotransferase activity [GO:0008146]; response to cytokinin [GO:0009735],cytoplasm [GO:0005737]; flavonoid sulfotransferase activity [GO:1990135]; sulfotransferase activity [GO:0008146]; flavonoid metabolic process [GO:0009812],hydrolase activity [GO:0016787]; sulfotransferase activity [GO:0008146] DEVELOPMENTAL STAGE: Expressed mostly in 5-day old seedlings, at developmental stage 1. {ECO:0000269|PubMed:17095238}. TISSUE SPECIFICITY: Expressed in the aerial parts of seedlings, in roots, leaves and flowers. Not detected in stems and siliques. {ECO:0000269|PubMed:20374532, ECO:0000269|PubMed:8639757, ECO:0000269|PubMed:9212075}.,TISSUE SPECIFICITY: Expressed in seedlings and roots. {ECO:0000269|PubMed:17039368}.,TISSUE SPECIFICITY: Expressed in inflorescence stems, roots and siliques. {ECO:0000269|PubMed:17095238}. locus:2044219;,locus:2044234;,locus:2170857;,locus:2096855;,locus:2009992;,locus:2080993;,locus:2096845; AT2G03750,AT2G03760,AT5G43690,AT3G45080,AT1G13420,AT3G51210,AT3G45070 sulfotransferase Sulfotransferase (EC 2.8.2.-) Q8L452,Q7XKJ4,Q67VR8,Q2QY01,A0A0P0XYV1,A0A0P0Y6S6,A0A0N7KTJ7,A0A0P0XYQ6,A0A0P0XI38,A0A0P0XHM3 Q8L452_ORYSJ,Q7XKJ4_ORYSJ,Q67VR8_ORYSJ,Q2QY01_ORYSJ,A0A0P0XYV1_ORYSJ,A0A0P0Y6S6_ORYSJ,A0A0N7KTJ7_ORYSJ,A0A0P0XYQ6_ORYSJ,A0A0P0XI38_ORYSJ,A0A0P0XHM3_ORYSJ Os01g0311600 B1011A07.9 OsJ_01482 OSNPB_010311600 P0551A11.36,Os04g0526300 Os04g0526300 OSJNBa0038O10.13 OSNPB_040526300,Os06g0626600 OSJNBa0072A21.32 OSNPB_060626600 P0530H05.3,LOC_Os12g04320 Os12g0137700 OsJ_35165 OSNPB_120137700,Os11g0141333 OSNPB_110141333,Os12g0137933 OSNPB_120137933,Os12g0137600 OSNPB_120137600,Os11g0141100 OSNPB_110141100,Os08g0514600 OSNPB_080514600,Os08g0515000 OSNPB_080515000 ENOG411DWCN PHF1 Q8GYE0 PHF1_ARATH SEC12-like protein 1 (Protein PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1) (PHF-1) constitutively displays many Pi starvation responses and high arsenate resistance. phf1 affects Pi transport directly and this effect is largely specific to this nutrient Under limited phosphate: Dwarf; Many, large root hairs; Elevated anthocyanin levels-J. Paz-Ares-2005 FUNCTION: Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane. {ECO:0000269|PubMed:16284308}. R-ATH-204005; 43767 SEC12-like protein 1 (Protein PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1) (PHF-1) endoplasmic reticulum [GO:0005783]; integral component of endoplasmic reticulum membrane [GO:0030176]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; GTPase binding [GO:0051020]; Sar guanyl-nucleotide exchange factor activity [GO:0005090]; cellular response to phosphate starvation [GO:0016036]; ER to Golgi vesicle-mediated transport [GO:0006888]; phosphate ion transport [GO:0006817]; protein secretion [GO:0009306]; regulation of COPII vesicle coating [GO:0003400] TISSUE SPECIFICITY: Ubiquitous with higher levels in flowers, roots and senescing leaves. {ECO:0000269|PubMed:16284308}. locus:2083850; AT3G52190 Sec12-like protein Os03g0799900 protein (Transducin family protein, putative, expressed) (cDNA clone:J023024A21, full insert sequence) Q10BZ9 Q10BZ9_ORYSJ Os03g0799900 LOC_Os03g58570 OSNPB_030799900 ENOG411DWCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os11g0159900 protein A0A0N7KSG9 A0A0N7KSG9_ORYSJ Os11g0159900 OSNPB_110159900 ENOG411DWCB PER59 Q39034 PER59_ARATH Peroxidase 59 (Atperox P59) (EC 1.11.1.7) (ATPN) (Peroxidase N) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G19890-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35023 Peroxidase 59 (Atperox P59) (EC 1.11.1.7) (ATPN) (Peroxidase N) cytoplasm [GO:0005737]; extracellular region [GO:0005576]; nucleus [GO:0005634]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Slightly expressed in roots. locus:2147645; AT5G19890 peroxidase Peroxidase (EC 1.11.1.7),Os03g0235000 protein (Fragment) Q7XHB1,A0A0P0VV33 Q7XHB1_ORYSJ,A0A0P0VV33_ORYSJ prx126 OSJNBa0015O22.21 LOC_Os10g02070 Os10g0109600 OsJ_30495 OSNPB_100109600,Os03g0235000 OSNPB_030235000 ENOG411DWCC EDD1 Q8L785 SYGM2_ARATH Glycine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.14) (Glycyl-tRNA synthetase 2) (GlyRS-2) (Protein EMBRYO-DEFECTIVE-DEVELOPMENT 1) DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo between the globular and heart stages (PubMed:9707529). Plants with partial loss of EDD1 display changes in patterning of margin and distal regions of leaves (PubMed:22791832). {ECO:0000269|PubMed:22791832, ECO:0000269|PubMed:9707529}. Embryo defective; Globular-T. Altmann-1998 FUNCTION: Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs. {ECO:0000250|UniProtKB:P41250}. ARA:AT3G48110-MONOMER; 6.1.1.14; 6.1.1.14 119773 Glycine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.14) (Glycyl-tRNA synthetase 2) (GlyRS-2) (Protein EMBRYO-DEFECTIVE-DEVELOPMENT 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glycine-tRNA ligase activity [GO:0004820]; protein dimerization activity [GO:0046983]; embryo development ending in seed dormancy [GO:0009793]; glycyl-tRNA aminoacylation [GO:0006426]; regulation of embryonic development [GO:0045995] locus:2097885; AT3G48110 Glycyl-tRNA synthetase 2 Os06g0103600 protein (Putative aminoacyl-t-RNA synthetase),Os06g0103600 protein (Fragment) Q5VRH2,A0A0P0WS12 Q5VRH2_ORYSJ,A0A0P0WS12_ORYSJ Os06g0103600 Os06g0103600 OsJ_19814 OSJNBa0075G19.30-1 OSNPB_060103600,Os06g0103600 OSNPB_060103600 ENOG411DWCA Q8VYC4 Q8VYC4_ARATH NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (Putative sun (Fmu) protein) (Putative sun protein fmu) ARA:GQT-1221-MONOMER; 58345 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (Putative sun (Fmu) protein) (Putative sun protein fmu) RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; regulation of transcription, DNA-templated [GO:0006355]; RNA methylation [GO:0001510] locus:2090054; AT3G13180 ribosomal RNA small subunit methyltransferase Os09g0477900 protein (SunL protein-like) Q651X9 Q651X9_ORYSJ Os09g0477900 OsJ_29754 OSNPB_090477900 P0556A05.29 ENOG411DWCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prolyl oligopeptidase family Os06g0215400 protein (Putative aminopeptidase C) Q69TI3 Q69TI3_ORYSJ Os06g0215400 OSJNBb0024N18.1 OSNPB_060215400 P0537F07.23 ENOG411DWCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF630) NA NA NA NA NA NA NA ENOG411DWCD Q9FH91 Q9FH91_ARATH AT5g67220/K21H1_18 (FMN-linked oxidoreductases superfamily protein) (Gb|AAF51525.1) 48236 AT5g67220/K21H1_18 (FMN-linked oxidoreductases superfamily protein) (Gb|AAF51525.1) flavin adenine dinucleotide binding [GO:0050660]; tRNA dihydrouridine synthase activity [GO:0017150] locus:2155528; AT5G67220 Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity) Os06g0712900 protein Q0D9J7 Q0D9J7_ORYSJ Os06g0712900 Os06g0712900 OSNPB_060712900 ENOG411DWCE STM Q38874 STM_ARATH Homeobox protein SHOOT MERISTEMLESS Double mutant enhances the SAM phenotype. 80% of double mutants show shoot termination after germination and production of the first two sets of leaves. Shoots regenerate at a low frequency.,30 from a total of 40 seedlings (75%) developed at least one leaf 8 days after germination and all double mutant progeny developed leaves by day 20. In 19 stm-1 trn2-23010 double mutant seedlings leaves initiated from the base of the cotyledons which were always fused due to lack of early STM activity. In the remaining 21 double mutant progeny single leaves or side shoots arose laterally from the outside of the fused base of the petioles instead of being initiated from the shoot apex and thus resembled stm-1 mutant side shoots which are initiated after a long delay.,The double mutant progeny does not develop flowers.,About 51% of stm-5 trn2-23010 double mutant seedlings produced leaves by 8 days after germination compared to only 3% in the stm-5 single mutant. In contrast to combination with stm-1 leaves of stm-5 trn2-23010 double mutants never initiated from outside the base of the cotyledon petioles but emerged internally to the cotyledons where the SAM normally resides in wild type. Embryo defective; Seedling lethal; Fused cotyledons; Complete loss of SAM-M. Barton-1996 FUNCTION: Required for shoot apical meristem (SAM) formation during embryogenesis. Negatively regulates ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2 or LBD6). Probably binds to the DNA sequence 5'-TGAC-3'. Binds to RNA (By similarity). {ECO:0000250|UniProtKB:P24345, ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:11934861}. 42753 Homeobox protein SHOOT MERISTEMLESS cytoplasm [GO:0005737]; microtubule cytoskeleton [GO:0015630]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; protein homodimerization activity [GO:0042803]; RNA binding [GO:0003723]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel development [GO:0048440]; cytokinin biosynthetic process [GO:0009691]; plasmodesmata-mediated intercellular transport [GO:0010497]; regulation of meristem structural organization [GO:0009934]; stem cell population maintenance [GO:0019827] DEVELOPMENTAL STAGE: First expressed in early to mid-globular-stage embryos. In late globular stage, detected as a stripe running medially across the top of the embryo. In heart stage embryo, expression is restricted to a notch between the cotyledons, in both hypodermal and protoderm cells. In the bending-cotyledon stage, localized in the SAM, but disappears from the boundary region of cotyledon margins (BCM). In seedlings and adult plants found in all shoot apical meristems. In the inflorescence meristem, expression disappears as floral buds are initiated and reappears in the later floral meristem where it is found in the central portion of the developing gyneocium. Also detected in the L1 layer of embryo. {ECO:0000269|PubMed:10079219}. TISSUE SPECIFICITY: Expressed in all four types of shoot apical meristems (SAM) i.e. in vegetative, axillary, inflorescence and floral. locus:2027089; AT1G62360 homeobox protein NA NA NA NA NA NA NA ENOG411DWC8 PRORP1 Q66GI4 PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial (EC 3.1.26.5) (Pentatricopeptide repeat-containing protein At2g32230) DISRUPTION PHENOTYPE: Embryo lethality when homozygous. {ECO:0000269|PubMed:20473316}. FUNCTION: Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Preferentially cleaves at the unusual cleavage site, but also able to cleave at the classical cleavage site. Also involved in the maturation of mRNAs in mitochondria. {ECO:0000269|PubMed:20473316, ECO:0000269|PubMed:20660484, ECO:0000269|PubMed:22549728, ECO:0000269|PubMed:22991464}. 3.1.26.5 64877 Proteinaceous RNase P 1, chloroplastic/mitochondrial (EC 3.1.26.5) (Pentatricopeptide repeat-containing protein At2g32230) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ribonuclease P activity [GO:0004526]; tRNA 5'-leader removal [GO:0001682]; tRNA processing [GO:0008033] locus:2045432; AT2G32230 Pentatricopeptide repeat-containing protein At2g32230 Os02g0273800 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J013166C04, full insert sequence),Os04g0692500 protein (Fragment) Q6K7U1,A0A0P0WGS1,A0A0P0WGQ0 Q6K7U1_ORYSJ,A0A0P0WGS1_ORYSJ,A0A0P0WGQ0_ORYSJ P0413A11.14-1 Os02g0273800 OSNPB_020273800,Os04g0692500 OSNPB_040692500 ENOG411DWC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif containing protein Os08g0492100 protein (Putative ribonucleoprotein) (cDNA clone:001-001-A05, full insert sequence),(Rice Genome Annotation Project) RNA recognition motif family protein (Os08g0492100 protein) Q6Z8U4,B7EPZ7 Q6Z8U4_ORYSJ,B7EPZ7_ORYSJ Os08g0492100 OsJ_27766 OSNPB_080492100 P0686H11.12,Os08g0492100 OSNPB_080492100 ENOG411DWC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain OSJNBa0055C08.3 protein (Os04g0390700 protein) (cDNA clone:002-125-H01, full insert sequence) Q7XVN6 Q7XVN6_ORYSJ Os04g0390700 Os04g0390700 OSJNBa0055C08.3 OSNPB_040390700 ENOG411DWC3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4'-phosphopantetheinyl transferase superfamily 4'-phosphopantetheinyl transferase superfamily protein, expressed (Os12g0133400 protein) (cDNA clone:J023089C15, full insert sequence),Os11g0136500 protein Q2QY38,A0A0P0XYJ2 Q2QY38_ORYSJ,A0A0P0XYJ2_ORYSJ LOC_Os12g03960 Os12g0133400 OSNPB_120133400,Os11g0136500 OSNPB_110136500 ENOG411DWC0 SGR5,IDD16,IDD14 F4IPE3,Q9FRH4,Q9C9X7,A0A1P8AS01 IDD15_ARATH,IDD16_ARATH,IDD14_ARATH,A0A1P8AS01_ARATH Protein SHOOT GRAVITROPISM 5 (Protein indeterminate-domain 15) (AtIDD15),Protein indeterminate-domain 16 (AtIDD16),Protein indeterminate-domain 14 (AtIDD14) (Transcriptional regulator of starch metabolism IDD14),Indeterminate(ID)-domain 16 DISRUPTION PHENOTYPE: In sgr5-2 and sgr5-3, abnormal inflorescence stems gravitropism but normal hypocotyl and root gravitropism. Slow amyloplasts sedimentation associated with lower amyloplast starch levels. Attenuated stem circumnutation movement. No visible phenotype (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.,DISRUPTION PHENOTYPE: No visible phenotype (PubMed:24039602). Accelerated growth and slightly early flowering (PubMed:21556057). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. Inflorescence stems of mutant plants showed abnormal gravitropic response while gravitropism in hypocotyls and roots was not altered.,Reduced shoot gravitropism compared with wild-type Ler. Reduced inflorescence stem gravitropism-M. Tasaka-2006 FUNCTION: Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.,FUNCTION: Transcription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.,FUNCTION: Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. 50140,41481,47558,35213 Protein SHOOT GRAVITROPISM 5 (Protein indeterminate-domain 15) (AtIDD15),Protein indeterminate-domain 16 (AtIDD16),Protein indeterminate-domain 14 (AtIDD14) (Transcriptional regulator of starch metabolism IDD14),Indeterminate(ID)-domain 16 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circumnutation [GO:0010031]; detection of gravity [GO:0009590]; floral organ morphogenesis [GO:0048444]; gravitropism [GO:0009630]; leaf morphogenesis [GO:0009965]; negative gravitropism [GO:0009959]; positive regulation of auxin biosynthetic process [GO:0010601]; regulation of auxin polar transport [GO:2000012]; regulation of starch metabolic process [GO:2000904]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; floral organ morphogenesis [GO:0048444]; gravitropism [GO:0009630]; leaf morphogenesis [GO:0009965]; positive regulation of auxin biosynthetic process [GO:0010601]; regulation of auxin polar transport [GO:2000012]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein heterodimerization activity [GO:0046982]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; floral organ morphogenesis [GO:0048444]; gravitropism [GO:0009630]; leaf morphogenesis [GO:0009965]; positive regulation of auxin biosynthetic process [GO:0010601]; regulation of auxin polar transport [GO:2000012]; regulation of starch metabolic process [GO:2000904]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}.,TISSUE SPECIFICITY: Highly expressed in leaves, hypocotyls, roots, vasculature of cotyledons, floral organs and in the endodermis and vasculaturenof inflorescence stems. {ECO:0000269|PubMed:24039602}.,TISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}. locus:2041105;,locus:2032985;,locus:2200196; AT2G01940,AT1G25250,AT1G68130 nucleic acid binding transcription factor zinc ion binding Os08g0467100 protein (Putative zinc finger protein) (cDNA clone:002-116-B04, full insert sequence) Q6YSA1 Q6YSA1_ORYSJ Os08g0467100 OSNPB_080467100 P0104B02.35 P0470B03.6 ENOG411DWC1 EMB2777 Q8L3P4,Q9LHE2,F4IZ10 Q8L3P4_ARATH,Q9LHE2_ARATH,F4IZ10_ARATH Sas10/U3 ribonucleoprotein (Utp) family protein (Uncharacterized protein At2g43650),Something about silencing protein Embryo defective; Cotyledon-D. Meinke-2007 R-ATH-6791226; 73973,20182,20310 Sas10/U3 ribonucleoprotein (Utp) family protein (Uncharacterized protein At2g43650),Something about silencing protein nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; viral nucleocapsid [GO:0019013]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; rRNA processing [GO:0006364],nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2044014;,locus:2095390; AT2G43650,AT3G28230 Pfam:Sas10_Utp3_C Os01g0104800 protein (cDNA clone:J013109E04, full insert sequence),Os01g0104800 protein (Fragment) Q657Z6,A0A0N7KC66 Q657Z6_ORYSJ,A0A0N7KC66_ORYSJ Os01g0104800 OSNPB_010104800 P0005A05.2 P0436E04.27,Os01g0104800 OSNPB_010104800 ENOG411DWC6 TBL46,TBL32,TBL33 Q93ZA5,Q9SRL3,F4IH21 TBL46_ARATH,TBL32_ARATH,TBL33_ARATH Putative truncated protein trichome birefringence-like 46,Protein trichome birefringence-like 32,Protein trichome birefringence-like 33 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 16060,51708,49319 Putative truncated protein trichome birefringence-like 46,Protein trichome birefringence-like 32,Protein trichome birefringence-like 33 Golgi apparatus [GO:0005794]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; xylan O-acetyltransferase activity [GO:1990538]; plant-type secondary cell wall biogenesis [GO:0009834]; xylan acetylation [GO:1990937] locus:2085512;,locus:2063125; AT3G61020,AT3G11030,AT2G40320 Pfam:DUF231 Expressed protein (Os03g0817900 protein) (cDNA clone:J023093O16, full insert sequence) Q84TW8 Q84TW8_ORYSJ LOC_Os03g60350 Os03g0817900 OSJNBa0094J08.9 OSNPB_030817900 ENOG411DWC7 POLAR Q6NQ99,Q9LEV1,A0A1P8B9P9 POLAR_ARATH,Q9LEV1_ARATH,A0A1P8B9P9_ARATH Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION,Myosin heavy chain-like protein (Uncharacterized protein T30N20_160),Myosin heavy chain-like protein DISRUPTION PHENOTYPE: No visible effect. {ECO:0000269|PubMed:21963668}. FUNCTION: Regulates asymmetric cell division, especially in stomatal-lineage cells. {ECO:0000269|PubMed:21963668}. 39765,34283,38571 Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION,Myosin heavy chain-like protein (Uncharacterized protein T30N20_160),Myosin heavy chain-like protein cell cortex [GO:0005938]; cell periphery [GO:0071944]; cytoplasm [GO:0005737]; asymmetric cell division [GO:0008356] DEVELOPMENTAL STAGE: During germination, first observed in a subset of protodermal cells, likely meristemoid mother cells (MMCs), both in the cytosol and at the cell periphery. Two hours before each asymmetric division occurs, becomes dynamically localized at the cell cortex distal to the division plane, especially in cells of the stomatal lineage. After asymmetric cell division, up-regulated in only one of the daughter cells that will continue to divide asymmetrically. {ECO:0000269|PubMed:21963668}. TISSUE SPECIFICITY: Expressed in stomatal lineage cells with asymmetric division potential. {ECO:0000269|PubMed:21963668}. locus:505006539;,locus:2183785; AT4G31805,AT5G10890 NA Os06g0184200 protein (Fragment) A0A0P0WT90 A0A0P0WT90_ORYSJ Os06g0184200 OSNPB_060184200 ENOG411DWC4 F4HNZ9 F4HNZ9_ARATH ARM repeat superfamily protein 110530 ARM repeat superfamily protein cytoplasm [GO:0005737]; nuclear membrane [GO:0031965]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; protein import into nucleus [GO:0006606] locus:2010381; AT1G12930 Exportin 1-like protein NA NA NA NA NA NA NA ENOG411DWC5 TRZ4,TRZ3 F4J1H7,Q8VYS2,A0A1I9LSG7,A0A1I9LSG8 RNZ4_ARATH,RNZ3_ARATH,A0A1I9LSG7_ARATH,A0A1I9LSG8_ARATH tRNAse Z TRZ4, mitochondrial (EC 3.1.26.11) (Long tRNase Z 2) (tRNase ZL2) (AthTRZL2),tRNase Z TRZ3, mitochondrial (EC 3.1.26.11) (Long tRNase Z 1) (tRNase ZL1) (AthTRZL1),tRNAse Z4 DISRUPTION PHENOTYPE: No visible phenotype due to the redundancy with TRZ3. Trz3 and trz4 double mutants are lethal. {ECO:0000269|PubMed:19411372}.,DISRUPTION PHENOTYPE: No visible phenotype due to the redundancy with TRZ4. Trz3 and trz4 double mutants are lethal. {ECO:0000269|PubMed:19411372}. FUNCTION: Zinc phosphodiesterase, which displays tRNA 3'-processing endonuclease activity. Involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. Can process the mitochondrial tRNA-like structures (t-elements). {ECO:0000269|PubMed:19411372}.,FUNCTION: Zinc phosphodiesterase, which displays tRNA 3'-processing endonuclease activity (PubMed:19411372). Involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA (PubMed:19411372). Can process the mitochondrial tRNA-like structures (t-elements) (PubMed:19411372). Involved in the processing of small nucleolar RNAs (snoRNAs) (PubMed:19420328). {ECO:0000269|PubMed:19411372, ECO:0000269|PubMed:19420328}. 3.1.26.11; 3.1.26.11 104727,98640,89283,93625 tRNAse Z TRZ4, mitochondrial (EC 3.1.26.11) (Long tRNase Z 2) (tRNase ZL2) (AthTRZL2),tRNase Z TRZ3, mitochondrial (EC 3.1.26.11) (Long tRNase Z 1) (tRNase ZL1) (AthTRZL1),tRNAse Z4 mitochondrion [GO:0005739]; 3'-tRNA processing endoribonuclease activity [GO:0042781]; metal ion binding [GO:0046872]; mitochondrial tRNA 3'-trailer cleavage, endonucleolytic [GO:0072684]; tRNA 3'-end processing [GO:0042780],mitochondrion [GO:0005739]; nucleus [GO:0005634]; 3'-tRNA processing endoribonuclease activity [GO:0042781]; metal ion binding [GO:0046872]; mitochondrial tRNA 3'-trailer cleavage, endonucleolytic [GO:0072684]; tRNA 3'-end processing [GO:0042780],endoribonuclease activity, producing 5'-phosphomonoesters [GO:0016891]; tRNA 3'-trailer cleavage [GO:0042779] locus:2094912;,locus:2037430; AT3G16260,AT1G52160 Zinc phosphodiesterase ELAC protein Os01g0232300 protein A0A0P0V0V2 A0A0P0V0V2_ORYSJ Os01g0232300 OSNPB_010232300 ENOG411E72F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: leucine rich repeat NA NA NA NA NA NA NA ENOG411EJZG A0A1P8ASR3,A0A1P8ASR2,Q9ZW89,A0A1P8ASS5 A0A1P8ASR3_ARATH,A0A1P8ASR2_ARATH,Q9ZW89_ARATH,A0A1P8ASS5_ARATH Zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein,F5A8.9 protein (Zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein) 36184,42642,51930,45471 Zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein,F5A8.9 protein (Zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein) metal ion binding [GO:0046872] locus:2033691; AT1G67180 BRCA1 C Terminus (BRCT) domain NA NA NA NA NA NA NA ENOG411EJZF PRT6 F4KCC2,A0A1P8BFH3 PRT6_ARATH,A0A1P8BFH3_ARATH E3 ubiquitin-protein ligase PRT6 (EC 2.3.2.27) (Protein PROTEOLYSIS 6) (RING-type E3 ubiquitin transferase PRT6),Proteolysis 6 DISRUPTION PHENOTYPE: Reduced seed germination potential and inhibition of seedling establishment by sucrose (PubMed:19255443). Exhibits abnormal shoot and leaf development (PubMed:19620738). {ECO:0000269|PubMed:19255443, ECO:0000269|PubMed:19620738}. ABA hypersensitivity for germination sugar hypersensitivity for establishment prolonged after-ripening and reduced breakdown of stored lipid following germination.,Mutant plants accumulate ubiquitin fusion degradation test substrates as opposed to degrading them as wild type plants do. Delayed after-ripening; Short roots without exogenous sucrose-M. Holdsworth-2009 FUNCTION: Ubiquitin ligase protein which is a component of the N-end rule pathway with the arginyltransferases ATE1 and ATE2. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation (PubMed:17572409, PubMed:19255443, PubMed:19620738, PubMed:22020282). Does not participate in degradation of proteins with N-terminal Phe or Leu (PubMed:17572409). The N-end rule pathway regulates seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination (PubMed:19255443). The end-rule pathway regulates various aspects of leaf and shoot development (PubMed:19620738). Involved in the ubiquitination and subsequent degradation of RAP2-12, an activator of hypoxic gene expression. The ubiquitination occurs after the N-arginylation of RAP2-12 by ATE1 or ATE2 under aerobic conditions (PubMed:22020282). {ECO:0000269|PubMed:17572409, ECO:0000269|PubMed:19255443, ECO:0000269|PubMed:19620738, ECO:0000269|PubMed:22020282}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. R-ATH-983168; 2.3.2.27 223964,215035 E3 ubiquitin-protein ligase PRT6 (EC 2.3.2.27) (Protein PROTEOLYSIS 6) (RING-type E3 ubiquitin transferase PRT6),Proteolysis 6 cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; regulation of lipid catabolic process [GO:0050994]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; ubiquitin-dependent protein catabolic process [GO:0006511]; ubiquitin-dependent protein catabolic process via the N-end rule pathway [GO:0071596],zinc ion binding [GO:0008270] locus:2180147; AT5G02310 Putative zinc finger in N-recognin (UBR box) Os01g0148000 protein,Os01g0148050 protein (Fragment) A0A0P0UY23,A0A0P0UYQ2 A0A0P0UY23_ORYSJ,A0A0P0UYQ2_ORYSJ Os01g0148000 OSNPB_010148000,Os01g0148050 OSNPB_010148050 ENOG411EJZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411EJZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DnaJ (Hsp40) homolog subfamily C member 6 NA NA NA NA NA NA NA ENOG411EJZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ Expressed protein (Os11g0661200 protein) Q2R031 Q2R031_ORYSJ Os11g0661200 LOC_Os11g43950 OsJ_34734 OSNPB_110661200 ENOG411EJZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxilin-related protein NA NA NA NA NA NA NA ENOG411EJZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EJZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0305000 protein (Fragment),Os11g0205200 protein,Os02g0328500 protein,Os01g0523800 protein (Fragment),Os04g0590366 protein Q0J6K1,A0A0P0Y003,A0A0P0VIF7,A0A0P0V3F6,A0A0N7KJL4 Q0J6K1_ORYSJ,A0A0P0Y003_ORYSJ,A0A0P0VIF7_ORYSJ,A0A0P0V3F6_ORYSJ,A0A0N7KJL4_ORYSJ Os08g0305000 Os08g0305000 OSNPB_080305000,Os11g0205200 OSNPB_110205200,Os02g0328500 OSNPB_020328500,Os01g0523800 OSNPB_010523800,Os04g0590366 OSNPB_040590366 ENOG411EJZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol-4-phosphate 5-Kinase NA NA NA NA NA NA NA ENOG411EJZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Fizzy-related protein, putative, expressed (Os03g0123300 protein) (cDNA clone:J023060I01, full insert sequence),Os03g0123300 protein (Fragment) Q10SH0,A0A0P0VSP9 Q10SH0_ORYSJ,A0A0P0VSP9_ORYSJ LOC_Os03g03150 Os03g0123300 OSNPB_030123300,Os03g0123300 OSNPB_030123300 ENOG411EJZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 domain Os09g0556200 protein A3C1D8 A3C1D8_ORYSJ Os09g0556200 OsJ_30295 OSNPB_090556200 ENOG411EJZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: ripening-related protein NA NA NA NA NA NA NA ENOG411EJZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: repeat-containing protein NA NA NA NA NA NA NA ENOG411EJZT F4JS89,A8MR29,A0A1P8B8Y8,F4JS86,F4JS90 F4JS89_ARATH,A8MR29_ARATH,A0A1P8B8Y8_ARATH,F4JS86_ARATH,F4JS90_ARATH RING/U-box superfamily protein 28890,28501,29384,29369,28517 RING/U-box superfamily protein locus:2123216; AT4G13100 RING NA NA NA NA NA NA NA ENOG411EJZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJZY F4J6I7 F4J6I7_ARATH Ankyrin repeat family protein 67827 Ankyrin repeat family protein cytoplasm [GO:0005737] locus:2093741; AT3G24210 Pfam:DUF3424 NA NA NA NA NA NA NA ENOG411EJZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 NA NA NA NA NA NA NA ENOG411EJZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0189300 protein) (cDNA clone:J023004E23, full insert sequence) (cDNA clone:J023027B20, full insert sequence) Q8H7N3 Q8H7N3_ORYSJ OJ1217B09.13 LOC_Os03g08980 Os03g0189300 OsJ_09714 OSNPB_030189300 ENOG411EJZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sorting nexin C terminal NA NA NA NA NA NA NA ENOG411EJZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sorting nexin C terminal NA NA NA NA NA NA NA ENOG411EJZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411E7YP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0540600 protein Q6ZIU5 Q6ZIU5_ORYSJ Os08g0540600 OJ1211_G06.8 OsJ_28124 OSNPB_080540600 ENOG411E8X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0520500 protein Q0E0V0 Q0E0V0_ORYSJ Os02g0520500 Os02g0520500 OSNPB_020520500 ENOG411EANG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NACHT domain NA NA NA NA NA NA NA ENOG411E519 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os04g0612500 protein,Os04g0612500 protein (Fragment) B9FCG2,Q0JA77 B9FCG2_ORYSJ,Q0JA77_ORYSJ Os04g0612500 OsJ_16129 OSNPB_040612500,Os04g0612500 Os04g0612500 OSNPB_040612500 ENOG411E518 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Glutaredoxin-C9,Microsporeless 1 (Os07g0151100 protein) Q7XIZ1,H9MER5 GRXC9_ORYSJ,H9MER5_ORYSJ GRXC9 Os07g0151100 LOC_Os07g05630 B1364A02.2 OJ1048_C10.3 OsJ_23111,MIL1 Os07g0151100 OSNPB_070151100 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E511 Q84JP2,Q6IDB5,F4IS25,F4IZ13,F4IA92 Q84JP2_ARATH,Q6IDB5_ARATH,F4IS25_ARATH,F4IZ13_ARATH,F4IA92_ARATH Carbohydrate-binding X8 domain superfamily protein (Putative glycosyl hydrolase family 17 protein),At2g43670 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein ARA:GQT-1748-MONOMER; 13421,13612,13520,13875,13040 Carbohydrate-binding X8 domain superfamily protein (Putative glycosyl hydrolase family 17 protein),At2g43670 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein hydrolase activity [GO:0016787],integral component of membrane [GO:0016021] locus:2043979;,locus:2043999;,locus:2095440;,locus:2202945; AT2G43660,AT2G43670,AT3G28250,AT1G78520 X8 domain NA NA NA NA NA NA NA ENOG411E510 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: mitochondrial transcription termination NA NA NA NA NA NA NA ENOG411E513 A0A178VMN8,F4I9I9,A0A1I9LPY5,F4IZ28 A0A178VMN8_ARATH,F4I9I9_ARATH,A0A1I9LPY5_ARATH,F4IZ28_ARATH Spindle assembly checkpoint component,CTAGE family protein 25298,17672,32871,32488 Spindle assembly checkpoint component,CTAGE family protein locus:2033964;,locus:2088922; AT1G51430,AT3G28370 NA Os06g0235900 protein,Os06g0244200 protein A0A0P0WUF4,A0A0P0WUI0 A0A0P0WUF4_ORYSJ,A0A0P0WUI0_ORYSJ Os06g0235900 OSNPB_060235900,Os06g0244200 OSNPB_060244200 ENOG411E512 P93741 P93741_ARATH At2g42060 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g42060) 29361 At2g42060 (Cysteine/Histidine-rich C1 domain family protein) (Uncharacterized protein At2g42060) cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; thioredoxin-disulfide reductase activity [GO:0004791]; intracellular signal transduction [GO:0035556] locus:2064551; AT2G42060 C1-like domain NA NA NA NA NA NA NA ENOG411E515 CELLULOSE SYNTHASE LIKE D5 A2RVS1 A2RVS1_ARATH At1g29780 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) 25183 At1g29780 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) phosphoprotein phosphatase activity [GO:0004721] locus:2019352; AT1G29780 CPDc NA NA NA NA NA NA NA ENOG411E514 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STI NA NA NA NA NA NA NA ENOG411E517 SSN2 Q147J4,F4JJV9 Q147J4_ARATH,F4JJV9_ARATH At4g33925 (Zinc finger SWIM domain protein),Zinc finger SWIM domain protein 14696,13866 At4g33925 (Zinc finger SWIM domain protein),Zinc finger SWIM domain protein nucleus [GO:0005634]; transcription regulatory region DNA binding [GO:0044212]; defense response to bacterium [GO:0042742]; double-strand break repair via homologous recombination [GO:0000724] locus:505006552; AT4G33925 Inherit from euNOG: zinc finger SWIM-type containing 7 Os07g0593200 protein (Fragment) Q0D4Z4 Q0D4Z4_ORYSJ Os07g0593200 Os07g0593200 OSNPB_070593200 ENOG411E516 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein NA NA NA NA NA NA NA ENOG411E51Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os05g0361700 protein (cDNA clone:J023031H12, full insert sequence),Os05g0361700 protein (Fragment) Q6L4M2,A0A0P0WL89 Q6L4M2_ORYSJ,A0A0P0WL89_ORYSJ Os05g0361700 OSNPB_050361700 P0530H10.12 P0692D12.5,Os05g0361700 OSNPB_050361700 ENOG411E51X MHF15.21,T19F11.1 Q9FNI1,Q9SRN4 Q9FNI1_ARATH,Q9SRN4_ARATH Gb|AAF02129.1 (Putative B-type cyclin),E3 ubiquitin-protein ligase (T19F11.1 protein) (Uncharacterized protein At3g11600) (Uncharacterized protein At3g11600/T19F11_1) 13309,13040 Gb|AAF02129.1 (Putative B-type cyclin),E3 ubiquitin-protein ligase (T19F11.1 protein) (Uncharacterized protein At3g11600) (Uncharacterized protein At3g11600/T19F11_1) ligase activity [GO:0016874]; response to karrikin [GO:0080167] locus:2164235;,locus:2098328; AT5G06270,AT3G11600 NA NA NA NA NA NA NA NA ENOG411E51Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0740500 protein (Fragment) A0A0P0VPT6 A0A0P0VPT6_ORYSJ Os02g0740500 OSNPB_020740500 ENOG411E51Q T20K12.100 Q9M2E4 Q9M2E4_ARATH AT3g61200/T20K12_100 (Thioesterase superfamily protein) (Uncharacterized protein T20K12.100) 20474 AT3g61200/T20K12_100 (Thioesterase superfamily protein) (Uncharacterized protein T20K12.100) cytoplasm [GO:0005737]; peroxisome [GO:0005777]; acyl-CoA hydrolase activity [GO:0047617] locus:2098831; AT3G61200 thioesterase Os07g0462700 protein (cDNA clone:001-121-E04, full insert sequence) (cDNA clone:J033068J20, full insert sequence),Os07g0463500 protein Q7XIL1,A0A0P0X651 Q7XIL1_ORYSJ,A0A0P0X651_ORYSJ OJ1634_H04.108 Os07g0462700 OSNPB_070462700,Os07g0463500 OSNPB_070463500 ENOG411E51R SRX Q8GY89,A0A1P8AQM5,F4I7W2 SRX_ARATH,A0A1P8AQM5_ARATH,F4I7W2_ARATH Sulfiredoxin, chloroplastic/mitochondrial (AtSRX) (EC 1.8.98.2),Sulfiredoxin (EC 1.8.98.2),Sulfiredoxin DISRUPTION PHENOTYPE: Accumulation of overoxidized peroxiredoxin (Prx) and hyperoxidized form of Prx IIF, especially in response to photooxidative stress, H(2)O(2) treatment and water deficit. Increased tolerance to photooxidative stress generated by high light combined with low temperature. In long days, smaller leaves. {ECO:0000269|PubMed:17217469, ECO:0000269|PubMed:20176891, ECO:0000269|PubMed:21139087}. Sensitive to oxidative stress-J. Lazaro-2010 FUNCTION: Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in a peroxiredoxin. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase. Required to switch on the antioxidant pathway to regenerate the oxidative damage. In mitochondrion, catalyzes the retroreduction of the inactive sulfinic form of atypical Prx IIF using thioredoxin as reducing agent. {ECO:0000269|PubMed:17217469, ECO:0000269|PubMed:20176891}. 1.8.98.2; 1.8.98.2 13914,15034,21715 Sulfiredoxin, chloroplastic/mitochondrial (AtSRX) (EC 1.8.98.2),Sulfiredoxin (EC 1.8.98.2),Sulfiredoxin chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; sulfiredoxin activity [GO:0032542]; cellular response to oxidative stress [GO:0034599],ATP binding [GO:0005524]; sulfiredoxin activity [GO:0032542],chloroplast [GO:0009507]; oxidoreductase activity, acting on a sulfur group of donors [GO:0016667]; sulfiredoxin activity [GO:0032542]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Low expression in photosynthetic tissues such as leaves and sepals. {ECO:0000269|PubMed:17217469}. locus:2029579; AT1G31170 ParB Os06g0174300 protein (Sulfiredoxin-like protein) (cDNA, clone: J080066H20, full insert sequence) Q45GC6 Q45GC6_ORYSJ Os06g0174300 OSNPB_060174300 ENOG411E51T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: flowering promoting factor-like 1 Flowering-promoting factor 1-like protein 4 (FPF1-like protein 4) Q0JEF5 FLP4_ORYSJ Os04g0282400 LOC_Os04g21350 OsJ_14120 OSJNBa0071G03.4 ENOG411E51H A0A1I9LMB9,B3H460 A0A1I9LMB9_ARATH,B3H460_ARATH FAD-binding protein 27664,25073 FAD-binding protein locus:4515103227; AT3G49645 Inherit from KOG: Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity) Expressed protein (Os10g0360900 protein),Os07g0264900 protein (Fragment) Q339F4,Q0D7C7 Q339F4_ORYSJ,Q0D7C7_ORYSJ Os10g0360900 LOC_Os10g21660 OsJ_31223 OSNPB_100360900,Os07g0264900 Os07g0264900 OSNPB_070264900 ENOG411E51K NTL A0A1P8AWA6,A0A1P8AW76,F4I8X9,Q3E7U2 A0A1P8AWA6_ARATH,A0A1P8AW76_ARATH,F4I8X9_ARATH,Q3E7U2_ARATH NTF2-like protein 16622,17164,14730,14189 NTF2-like protein intracellular [GO:0005622]; transport [GO:0006810] locus:2200066; AT1G11570 nuclear transport factor Os01g0788200 protein (Putative nuclear transport factor Ntf2p) Q8RU32 Q8RU32_ORYSJ Os01g0788200 Os01g0788200 OsJ_03719 OSNPB_010788200 P0415A04.39 ENOG411E51N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF Os10g0419900 protein,Os10g0419700 protein A0A0P0XUK8,A0A0P0XU60 A0A0P0XUK8_ORYSJ,A0A0P0XU60_ORYSJ Os10g0419900 OSNPB_100419900,Os10g0419700 OSNPB_100419700 ENOG411E51A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Yippee NA NA NA NA NA NA NA ENOG411E51D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 Os08g0517100 protein,Os08g0517250 protein Q0J4G1,Q84JC7 Q0J4G1_ORYSJ,Q84JC7_ORYSJ Os08g0517100 Os08g0517100 OSNPB_080517100,P0686C03.147 Os08g0517250 P0700D12.106 OSNPB_080517250 ENOG411E51F KRP3,ICK6 Q9FKB5,F4K388 KRP3_ARATH,F4K388_ARATH Cyclin-dependent kinase inhibitor 3 (Inhibitor/interactor of CDK protein 6) (KIP-related protein 3),Inhibitor/interactor with cyclin-dependent kinase FUNCTION: Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1. {ECO:0000269|PubMed:16376885}. MISCELLANEOUS: Treatment with auxin induces lateral root initiation. 24925,27287 Cyclin-dependent kinase inhibitor 3 (Inhibitor/interactor of CDK protein 6) (KIP-related protein 3),Inhibitor/interactor with cyclin-dependent kinase nucleoplasm [GO:0005654]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; cell cycle arrest [GO:0007050],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; kinase activity [GO:0016301]; cell cycle arrest [GO:0007050]; negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045736] DEVELOPMENTAL STAGE: Highly expressed in actively dividing cells of root pericycle and suspension cell culture. Expressed in the G1/S phases and reaches a peak at the G2 phase. {ECO:0000269|PubMed:11449057, ECO:0000269|PubMed:12000456, ECO:0000269|PubMed:12368490}. locus:2156544; AT5G48820 cyclin-dependent kinase inhibitor NA NA NA NA NA NA NA ENOG411EM11 AP22.66 Q94AC3 Q94AC3_ARATH AT4g36960/C7A10_400 (RNA-binding (RRM/RBD/RNP motifs) family protein) 41692 AT4g36960/C7A10_400 (RNA-binding (RRM/RBD/RNP motifs) family protein) mRNA binding [GO:0003729] locus:2115169; AT4G36960 RNA recognition NA NA NA NA NA NA NA ENOG411EM10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycine-rich RNA-binding protein NA NA NA NA NA NA NA ENOG411EM14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411EM19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ataxin-2 C-terminal region Os08g0116400 protein (Fragment),Os08g0116400 protein (Putative RNA-binding protein RBP37) (RNA-binding protein) (cDNA clone:J033117F04, full insert sequence) Q0J8E8,Q69UJ1 Q0J8E8_ORYSJ,Q69UJ1_ORYSJ Os08g0116400 Os08g0116400 OSNPB_080116400,P0470F10.8-1 Os08g0116400 OsRBP37 OsJ_25822 OSNPB_080116400 ENOG411EM18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33 kDa ribonucleoprotein NA NA NA NA NA NA NA ENOG411EM1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0483200 protein (Putative RNA-binding protein cp33) (cDNA clone:J013128O11, full insert sequence) (cDNA clone:J013134M04, full insert sequence) Q6ZFE5 Q6ZFE5_ORYSJ OJ1111_H02.19-1 Os08g0483200 OsJ_27706 OSNPB_080483200 ENOG411EM1S PSRP2 Q8VYM4 PSRP2_ARATH 30S ribosomal protein 2, chloroplastic (Chloroplastic small ribosomal subunit protein cS22) (Plastid-specific 30S ribosomal protein 2, chloroplastic) (PSRP-2) DISRUPTION PHENOTYPE: No detectable effects on ribosome biogenesis and translation in normal conditions (PubMed:21923745). Better seedling growth under salt stress conditions (PubMed:24220572). {ECO:0000269|PubMed:21923745, ECO:0000269|PubMed:24220572}. FUNCTION: Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. May have a role in the recruitment of stored chloroplast mRNAs for active protein synthesis (By similarity). Bind single strand DNA (ssDNA) and RNA in vitro. Exhibits RNA chaperone activity. Regulates negatively resistance responses to abiotic stresses during seed germination (e.g. salt, dehydration, and low temperature) and seedling growth (e.g. salt) (PubMed:24220572). {ECO:0000250|UniProtKB:P82277, ECO:0000269|PubMed:24220572}. 27748 30S ribosomal protein 2, chloroplastic (Chloroplastic small ribosomal subunit protein cS22) (Plastid-specific 30S ribosomal protein 2, chloroplastic) (PSRP-2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; negative regulation of response to salt stress [GO:1901001]; negative regulation of response to water deprivation [GO:0080148]; regulation of seed germination [GO:0010029]; regulation of seedling development [GO:1900140]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed constitutively in roots, stems, flower buds, flowers and leaves. {ECO:0000269|PubMed:24220572}. locus:2083810; AT3G52150 RNA recognition motif (RRM)-containing protein NA NA NA NA NA NA NA ENOG411EM1R Q9SU22,F4JRD9 Q9SU22_ARATH,F4JRD9_ARATH RNA recognition motif (RRM)-containing protein (Uncharacterized protein AT4g12640),RNA recognition motif (RRM)-containing protein 78260,92858 RNA recognition motif (RRM)-containing protein (Uncharacterized protein AT4g12640),RNA recognition motif (RRM)-containing protein RNA binding [GO:0003723],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398] locus:2135605; AT4G12640 RNA recognition NA NA NA NA NA NA NA ENOG411EM1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPOC domain Os09g0516300 protein (cDNA clone:J013002G20, full insert sequence) Q69IL3 Q69IL3_ORYSJ Os09g0516300 OSJNBb0034B12.10 OSNPB_090516300 P0450E05.35 ENOG411EM1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os03g0363800 protein (RNA recognition motif family protein, expressed) (cDNA clone:J033127I18, full insert sequence) Q10L03 Q10L03_ORYSJ Os03g0363800 LOC_Os03g24890 Os03g0363800 OSNPB_030363800 ENOG411EM1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heterogeneous nuclear ribonucleoprotein A B-like NA NA NA NA NA NA NA ENOG411EM1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA polyadenylate-binding protein cytoplasmic and nuclear-like Os01g0209400 protein (RNA-binding protein-like) (cDNA clone:J033136L22, full insert sequence) Q5QNG0 Q5QNG0_ORYSJ Os01g0209400 OSJNBa0016I09.34 OSNPB_010209400 P0466B10.1 ENOG411EM1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1Z Q8S8L4,A0A1P8B228 Q8S8L4_ARATH,A0A1P8B228_ARATH At2g37510 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 15712,18597 At2g37510 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2049816; AT2G37510 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os03g0278800 protein (RNA-binding protein, putative, expressed) Q10N84 Q10N84_ORYSJ Os03g0278800 LOC_Os03g17060 Os03g0278800 OsJ_10350 OSNPB_030278800 ENOG411EM1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0490300 protein (Putative cleavage and polyadenylation specific factor) (cDNA clone:J013090I22, full insert sequence),Os09g0476100 protein (RNA-binding protein-like) (cDNA clone:J013120H23, full insert sequence) Q6ZBP8,Q651Z0 Q6ZBP8_ORYSJ,Q651Z0_ORYSJ Os08g0490300 OsJ_27752 OSNPB_080490300 P0605H02.31,Os09g0476100 Os09g0476100 OsJ_29744 OSNPB_090476100 P0556A05.12 ENOG411EM1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os04g0583800 protein C7J1S2 C7J1S2_ORYSJ Os04g0583800 Os04g0583800 OSNPB_040583800 ENOG411EM1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1F Q8RWF8,A0A1P8BFU0 Q8RWF8_ARATH,A0A1P8BFU0_ARATH Glycine-rich RNA-binding protein, putative (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 38679,29055 Glycine-rich RNA-binding protein, putative (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2147625; AT5G19960 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os04g0414300 protein A0A0P0WAK6 A0A0P0WAK6_ORYSJ Os04g0414300 OSNPB_040414300 ENOG411EM1K Q94BY1,A0A1I9LM49,A0A1I9LM48 Y3515_ARATH,A0A1I9LM49_ARATH,A0A1I9LM48_ARATH Uncharacterized protein At3g52155, chloroplastic (EC 3.1.3.-),Phosphoglycerate mutase family protein 3.1.3.- 23588,21389,18185 Uncharacterized protein At3g52155, chloroplastic (EC 3.1.3.-),Phosphoglycerate mutase family protein chloroplast [GO:0009507]; cytosol [GO:0005829]; phosphatase activity [GO:0016791] locus:505006396; AT3G52155 Pfam:PGAM Os09g0287300 protein A0A0N7KQI0 A0A0N7KQI0_ORYSJ Os09g0287300 OSNPB_090287300 ENOG411EM1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os09g0279500 protein (Putative plastid-specific ribosomal protein 2) (cDNA clone:001-038-A04, full insert sequence) (cDNA clone:J013110L09, full insert sequence),Os09g0279500 protein (Fragment) Q6H443,A0A0P0XJD2 Q6H443_ORYSJ,A0A0P0XJD2_ORYSJ Os09g0279500 Os09g0279500 OsJ_28655 OSNPB_090279500 P0651G05.3 P0701E06.36,Os09g0279500 OSNPB_090279500 ENOG411EM1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif family protein expressed Os03g0374575 protein (Putative splicing factor) (RNA recognition motif family protein, expressed) Q7Y171 Q7Y171_ORYSJ Os03g0374575 LOC_Os03g25770 OsJ_11026 OSJNBa0090L05.13 OSNPB_030374575 ENOG411EM1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EAN6 CAR10 Q9ZVF1 CAR10_ARATH Protein C2-DOMAIN ABA-RELATED 10 FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). {ECO:0000250|UniProtKB:Q9FHP6, ECO:0000250|UniProtKB:Q9LVH4}. 20085 Protein C2-DOMAIN ABA-RELATED 10 nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547] locus:2049602; AT2G01540 domain-containing protein NA NA NA NA NA NA NA ENOG411EAN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411DRM9 PDE327 F4JQE2 F4JQE2_ARATH FAD/NAD(P)-binding oxidoreductase family protein Pigment defective embryo-D. Meinke-2009 77090 FAD/NAD(P)-binding oxidoreductase family protein chloroplast [GO:0009507]; oxidoreductase activity [GO:0016491]; photosynthesis [GO:0015979] locus:2131954; AT4G30720 FAD binding domain Os05g0411200 protein (Fragment) A0A0P0WM81 A0A0P0WM81_ORYSJ Os05g0411200 OSNPB_050411200 ENOG411DRM8 Q6NMA9,A0A1P8BBQ8 Q6NMA9_ARATH,A0A1P8BBQ8_ARATH At5g45170 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) (Uncharacterized protein At5g45170),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 40741,37801 At5g45170 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) (Uncharacterized protein At5g45170),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2153348; AT5G45170 NA CbbY protein, putative, expressed (Os12g0630700 protein) (cDNA clone:J013127F16, full insert sequence) Q2QLS0 Q2QLS0_ORYSJ LOC_Os12g43520 Os12g0630700 OsJ_36962 OSNPB_120630700 ENOG411DRM5 PPD1 O23403 PPD1_ARATH PsbP domain-containing protein 1, chloroplastic (OEC23-like protein 3) (PsbP-related thylakoid lumenal protein 1) DISRUPTION PHENOTYPE: Seedling lethal. {ECO:0000269|PubMed:23221595}. FUNCTION: Photosystem I assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. {ECO:0000269|PubMed:23221595}. MetaCyc:AT4G15510-MONOMER; 32266 PsbP domain-containing protein 1, chloroplastic (OEC23-like protein 3) (PsbP-related thylakoid lumenal protein 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; membrane [GO:0016020]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosystem I assembly [GO:0048564] DEVELOPMENTAL STAGE: Highly expressed in very young leaves and then decreases with leaf age. {ECO:0000269|PubMed:23221595}. locus:2130295; AT4G15510 PsbP domain-containing protein 1 Os12g0564400 protein (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative, expressed) (cDNA clone:006-211-A10, full insert sequence) (cDNA clone:006-305-C08, full insert sequence),Os07g0275100 protein,Os12g0564400 protein (Fragment),Os07g0275901 protein (Fragment),Os07g0275801 protein (Fragment) Q2QNI4,A0A0P0X4M5,A0A0P0YBC5,A0A0P0X5G9,A0A0P0X511 Q2QNI4_ORYSJ,A0A0P0X4M5_ORYSJ,A0A0P0YBC5_ORYSJ,A0A0P0X5G9_ORYSJ,A0A0P0X511_ORYSJ LOC_Os12g37710 Os12g0564400 OSNPB_120564400,Os07g0275100 OSNPB_070275100,Os12g0564400 OSNPB_120564400,Os07g0275901 OSNPB_070275901,Os07g0275801 OSNPB_070275801 ENOG411DRM4 Q8L403,A0A1P8ATC1 Q8L403_ARATH,A0A1P8ATC1_ARATH Uncharacterized protein At1g15425 (WD repeat protein),WD repeat protein R-ATH-6791226; 30333,24214 Uncharacterized protein At1g15425 (WD repeat protein),WD repeat protein plasmodesma [GO:0009506]; rRNA processing [GO:0006364] locus:2196603; AT1G15420 WD repeat-containing protein 43-like Os01g0649000 protein,Expressed protein (Os12g0634800 protein) (cDNA clone:002-169-F09, full insert sequence) Q5VQD9,Q2QLN8 Q5VQD9_ORYSJ,Q2QLN8_ORYSJ Os01g0649000 Os01g0649000 OJ1316_H05.26 OsJ_02821 OSNPB_010649000,Os12g0634800 LOC_Os12g43830 Os12g0634800 OsJ_36987 OSNPB_120634800 ENOG411DRM7 Q9SUX7,Q8H148,Q8W0Z4,A0A1P8B4X8,A0A1P8B8V0,A0A1P8B9D4,F4JL64,F4JL70 FB245_ARATH,Q8H148_ARATH,Q8W0Z4_ARATH,A0A1P8B4X8_ARATH,A0A1P8B8V0_ARATH,A0A1P8B9D4_ARATH,F4JL64_ARATH,F4JL70_ARATH Putative F-box protein At4g22420,Ubiquitin C-terminal hydrolases superfamily protein (Uncharacterized protein At4g22285) (Uncharacterized protein At4g22290),At4g22410/F7K2_7 (Ubiquitin C-terminal hydrolases superfamily protein),Ubiquitin C-terminal hydrolases superfamily protein,U4/U6.U5 tri-snRNP-associated-like protein R-ATH-72163; 20867,62934,59427,45972,59244,29937,62707,43148 Putative F-box protein At4g22420,Ubiquitin C-terminal hydrolases superfamily protein (Uncharacterized protein At4g22285) (Uncharacterized protein At4g22290),At4g22410/F7K2_7 (Ubiquitin C-terminal hydrolases superfamily protein),Ubiquitin C-terminal hydrolases superfamily protein,U4/U6.U5 tri-snRNP-associated-like protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; zinc ion binding [GO:0008270]; protein deubiquitination [GO:0016579]; spliceosomal complex assembly [GO:0000245],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; zinc ion binding [GO:0008270]; protein deubiquitination [GO:0016579],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579],cytosol [GO:0005829]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; zinc ion binding [GO:0008270]; protein deubiquitination [GO:0016579]; spliceosomal complex assembly [GO:0000245] locus:2127505;,locus:4010713900;,locus:2132040;,locus:2127490; AT4G22420,AT4G22285,AT4G22350,AT4G22410 U4 U6.U5 tri-snRNP-associated protein Os09g0407900 protein (Putative U4/U6.U5 tri-snRNP-associated 65 kDa protein) (cDNA clone:J023074K10, full insert sequence) Q69MX3 Q69MX3_ORYSJ Os09g0407900 Os09g0407900 OJ1261_A08.56 OSNPB_090407900 P0465E03.8 ENOG411DRM6 MJJ3.7,MSF3.15 Q9FFK7,Q9ZV42,A0A1P8AY88 Q9FFK7_ARATH,Q9ZV42_ARATH,A0A1P8AY88_ARATH AT5G05670 protein (At5g05670) (Signal recognition particle binding protein) (Signal recognition particle receptor beta subunit-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative signal recognition particle receptor beta subunit),P-loop containing nucleoside triphosphate hydrolases superfamily protein 29076,28973,30225 AT5G05670 protein (At5g05670) (Signal recognition particle binding protein) (Signal recognition particle receptor beta subunit-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative signal recognition particle receptor beta subunit),P-loop containing nucleoside triphosphate hydrolases superfamily protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; signal recognition particle receptor complex [GO:0005785]; GTP binding [GO:0005525]; signal recognition particle binding [GO:0005047]; small GTPase mediated signal transduction [GO:0007264],integral component of membrane [GO:0016021]; signal recognition particle receptor complex [GO:0005785]; hydrolase activity [GO:0016787]; signal recognition particle binding [GO:0005047],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2166409;,locus:2054022; AT5G05670,AT2G18770 Signal recognition particle Os08g0524000 protein (Putative signal recognition particle receptor beta subunit (SR-beta)) (cDNA clone:J013098B11, full insert sequence),Os06g0473100 protein (Fragment) Q6ZK21,A0A0P0WWY5 Q6ZK21_ORYSJ,A0A0P0WWY5_ORYSJ Os08g0524000 Os08g0524000 OJ1186_G01.31 OsJ_27995 OSNPB_080524000,Os06g0473100 OSNPB_060473100 ENOG411DRM1 CLH2 Q9M7I7 CLH2_ARATH Chlorophyllase-2, chloroplastic (AtCLH2) (EC 3.1.1.14) (Chlorophyll-chlorophyllido hydrolase 2) (Chlase 2) FUNCTION: Catalyzes the hydrolysis of ester bond in chlorophyll to yield chlorophyllide and phytol. {ECO:0000269|PubMed:10611389}. MISCELLANEOUS: Unlike CLH1, the expression of this protein is not dependent on the presence of a functional COI1 protein. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll degradation. ARA:AT5G43860-MONOMER;MetaCyc:AT5G43860-MONOMER; 3.1.1.14; 3.1.1.14 34904 Chlorophyllase-2, chloroplastic (AtCLH2) (EC 3.1.1.14) (Chlorophyll-chlorophyllido hydrolase 2) (Chlase 2) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chlorophyllase activity [GO:0047746]; pheophytinase b activity [GO:0102293]; chlorophyll catabolic process [GO:0015996] TISSUE SPECIFICITY: Expressed in leaves, flowers and flower buds, but not in roots. {ECO:0000269|PubMed:11950974}. locus:2170852; AT5G43860 Chlorophyllase Os10g0419600 protein,Os07g0665801 protein A0A0P0XUB0,A0A0P0X9W9 A0A0P0XUB0_ORYSJ,A0A0P0X9W9_ORYSJ Os10g0419600 OSNPB_100419600,Os07g0665801 OSNPB_070665801 ENOG411DRM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like NA NA NA NA NA NA NA ENOG411DRM3 PBL11,PBL9,PBL10,PK1B,APK1A P43293,Q06548,P46573,A1L4W8,A0A1P8ANC9,F4IJN8,F4HQQ0 PBL11_ARATH,PBL9_ARATH,PBL10_ARATH,A1L4W8_ARATH,A0A1P8ANC9_ARATH,F4IJN8_ARATH,F4HQQ0_ARATH Probable serine/threonine-protein kinase PBL11 (EC 2.7.11.1) (PBS1-like protein 11),Probable serine/threonine-protein kinase PBL9 (EC 2.7.11.1) (PBS1-like protein 9) (Protein kinase 1A),Probable serine/threonine-protein kinase PBL10 (EC 2.7.11.1) (PBS1-like protein 10) (Protein kinase 1B),At2g28930 (Protein kinase 1B),Protein kinase superfamily protein,Protein kinase 1B DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Leaves of well-watered mutant plants have increased relative water content due to decreased stomata opening. {ECO:0000269|PubMed:24828466}. FUNCTION: May play a role in the regulation of plant growth and development (Probable). May be involved in plant defense signaling (By similarity). {ECO:0000250|UniProtKB:O48814, ECO:0000305|PubMed:8218420}.,FUNCTION: Possible bi-functional kinase. In vitro, it exhibits serine/threonine activity. In vivo, can phosphorylate tyrosine residues of limited substrates (PubMed:1450380). May be involved in plant defense signaling (By similarity). {ECO:0000250|UniProtKB:O48814, ECO:0000269|PubMed:1450380}.,FUNCTION: Possible bi-functional kinase. In vitro, it exhibits serine/threonine activity. In vivo, can phosphorylate tyrosine residues of limited substrates (By similarity). May be involved in plant defense signaling (By similarity). Required for full light-induced stomatal opening (PubMed:24828466). {ECO:0000250|UniProtKB:O48814, ECO:0000250|UniProtKB:Q06548, ECO:0000269|PubMed:24828466}. 2.7.10.2; 2.7.11.1 43534,45519,45746,47220,33246,46029,47019 Probable serine/threonine-protein kinase PBL11 (EC 2.7.11.1) (PBS1-like protein 11),Probable serine/threonine-protein kinase PBL9 (EC 2.7.11.1) (PBS1-like protein 9) (Protein kinase 1A),Probable serine/threonine-protein kinase PBL10 (EC 2.7.11.1) (PBS1-like protein 10) (Protein kinase 1B),At2g28930 (Protein kinase 1B),Protein kinase superfamily protein,Protein kinase 1B plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; positive regulation of stomatal opening [GO:1902458]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Roots, leaves and stems. {ECO:0000269|PubMed:8218420}.,TISSUE SPECIFICITY: Expressed in stomatal guard cells of leaves. {ECO:0000269|PubMed:24828466}. locus:2180127;,locus:2053240;,locus:2024962; AT5G02290,AT1G07570,AT2G28930 Protein kinase APK1A Receptor-like cytoplasmic kinase 176 (OsRLCK176) (EC 2.7.11.1),Os03g0274800 protein (Protein kinase APK1B, chloroplast, putative, expressed) (cDNA clone:J033113F11, full insert sequence),Os03g0821900 protein (Protein kinase APK1B, chloroplast, putative, expressed) (cDNA clone:J023064M04, full insert sequence),Os01g0973500 protein (cDNA clone:J023023F24, full insert sequence),Os03g0821900 protein Q65XV8,Q10NC1,Q10BD9,Q5JM84,A0A0P0W5E7 RK176_ORYSJ,Q10NC1_ORYSJ,Q10BD9_ORYSJ,Q5JM84_ORYSJ,A0A0P0W5E7_ORYSJ RLCK176 Os05g0110900 LOC_Os05g02020 OsJ_16858 P0016H04.10,LOC_Os03g16740 Os03g0274800 OsJ_10320 OSNPB_030274800,Os03g0821900 LOC_Os03g60710 Os03g0821900 OsJ_13155 OSNPB_030821900,Os01g0973500 Os01g0973500 OSNPB_010973500 P0518C01.44 P0698H10.18,Os03g0821900 OSNPB_030821900 FUNCTION: Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity. Participates to the activation of defense genes during response to PGN and chitin. {ECO:0000269|PubMed:25335639}. ENOG411DRM2 Q8L6Y8,A0A1P8AVR9,Q3ECK9,F4I8V6 Q8L6Y8_ARATH,A0A1P8AVR9_ARATH,Q3ECK9_ARATH,F4I8V6_ARATH Protein kinase superfamily protein (Uncharacterized protein At1g61640),Protein kinase superfamily protein 70469,68402,53857,70593 Protein kinase superfamily protein (Uncharacterized protein At1g61640),Protein kinase superfamily protein kinase activity [GO:0016301],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2200903;,locus:2200096; AT1G61640,AT1G11390 serine threonine-protein kinase abkC-like Os04g0660200 protein (Fragment) A0A0P0WG47 A0A0P0WG47_ORYSJ Os04g0660200 OSNPB_040660200 ENOG411DRMY DCL4 P84634,A0A1P8B9N9,F4K482 DCL4_ARATH,A0A1P8B9N9_ARATH,F4K482_ARATH Dicer-like protein 4 (EC 3.1.26.-),Dicer-like 4 Leaves are curled slightly downward at the margins.,Downward-curled leaf margins.,Elongated and downward curled leaves. Precocious distribution of abaxial trichomes in early rosette leaves which implies accelerated vegetative phase change.,Plants have altered silencing movement with respect to the parent line. Whereas the parent line has low levels of SUL mRNA and displays non-cell autonomous silencing the mutants lost the silencing movement phenotype and accumulated high levels of SUL mRNA. 21-nt SUL siRNAs are undetectable in these plants wherease the 24-nt siRNAs accumulated to similar levels as in the SUC-SUL parental line. Elongated, narrow, curled leaves-O. Voinnet-2005 FUNCTION: Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21-24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Required for the production of the 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays an important role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cucumber mosaic virus (CMV), turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL4 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. {ECO:0000269|PubMed:16040244, ECO:0000269|PubMed:16129836, ECO:0000269|PubMed:16131612, ECO:0000269|PubMed:16273107, ECO:0000269|PubMed:16682354, ECO:0000269|PubMed:16810317, ECO:0000269|PubMed:17586651, ECO:0000269|PubMed:17592042, ECO:0000269|PubMed:18003861, ECO:0000269|PubMed:18353962, ECO:0000269|PubMed:18799732}. 3.1.26.- 191279,166408,189678 Dicer-like protein 4 (EC 3.1.26.-),Dicer-like 4 cytoplasm [GO:0005737]; nucleus [GO:0005634]; RISC complex [GO:0016442]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; defense response to virus [GO:0051607]; DNA-templated transcription, termination [GO:0006353]; maintenance of DNA methylation [GO:0010216]; production of lsiRNA involved in RNA interference [GO:0010599]; production of ta-siRNAs involved in RNA interference [GO:0010267]; RNA virus induced gene silencing [GO:0051214]; vegetative phase change [GO:0010050]; virus induced gene silencing [GO:0009616],ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; RNA processing [GO:0006396],ATP binding [GO:0005524]; DNA binding [GO:0003677]; ribonuclease III activity [GO:0004525]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2149259; AT5G20320 Dicer-like protein Endoribonuclease Dicer homolog 4 (EC 3.1.26.-) (Dicer-like protein 4) (OsDCL4) (Protein SHOOT ORGANIZATION 1) A7LFZ6 DCL4_ORYSJ DCL4 SHO1 Os04g0509300 LOC_Os04g43050 OSJNBb0065L13.5 DISRUPTION PHENOTYPE: Formation of an incomplete shoot apical meristem (SAM), abnormal vegetative development with alteration of adaxial/abaxial polarity in both coleoptiles and the first leaves. Abnormal spikelet morphology with disruption of organ identity and lemma polarity. {ECO:0000269|PubMed:17804793, ECO:0000269|PubMed:17905898}. FUNCTION: Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production. {ECO:0000269|PubMed:17804793, ECO:0000269|PubMed:17905898}. ENOG411DRMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase NA NA NA NA NA NA NA ENOG411DRMZ Q6NQ98 Q6NQ98_ARATH At5g58020 (RTF2 RING-finger protein) (Uncharacterized protein At5g58020) 38596 At5g58020 (RTF2 RING-finger protein) (Uncharacterized protein At5g58020) nucleus [GO:0005634]; alternative mRNA splicing, via spliceosome [GO:0000380]; mitotic DNA replication termination [GO:1902979]; site-specific DNA replication termination at RTS1 barrier [GO:0071171] locus:2147765; AT5G58020 Rtf2 RING-finger Os06g0183900 protein (cDNA clone:006-207-D12, full insert sequence) Q5SMK9 Q5SMK9_ORYSJ Os06g0183900 OSJNBb0036B04.23 OSNPB_060183900 P0554A06.7 ENOG411DRMU STOP1 Q9C8N5,Q2V4J0 STOP1_ARATH,Q2V4J0_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (Zinc finger protein STOP1),AT1G34370 protein (C2H2 and C2HC zinc fingers superfamily protein) DISRUPTION PHENOTYPE: Hypersensitive to H(+) and Al(3+) rhizotoxicity, reduced induction of genes such as ALMT1 and MATE in response to acidic stress, and impaired Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. Reduced root growth at pH 4.7. Hypersensitive to proton (H+) and aluminum (Al3+) rhizotoxicity. No expression of the AtALMT1 gene (encoding a malate transporter) and malate excretion after Al treatment.,No root growth at pH 4.3. Root growth sensitive to low pH and aluminum-M. Kobayashi-2007 FUNCTION: Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. 55207,32221 Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (Zinc finger protein STOP1),AT1G34370 protein (C2H2 and C2HC zinc fingers superfamily protein) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to acidic pH [GO:0010447]; response to aluminum ion [GO:0010044]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. locus:2036303; AT1G34370 sensitive to proton rhizotoxicity Zinc finger protein STOP1 homolog (Protein STOP1 homolog) Q943I6 STOP1_ORYSJ Os01g0871200 LOC_Os01g65080 OsJ_04239 OSJNBb0008G24.8 P0039A07.24-1 FUNCTION: Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. ENOG411DRMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DRMW CALS8,GSL04 Q9LUD7,Q8GW77,A0A1I9LQE8,F4IW73 CALS8_ARATH,Q8GW77_ARATH,A0A1I9LQE8_ARATH,F4IW73_ARATH Putative callose synthase 8 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 4),Callose synthase (Glycosyltransferase) (Uncharacterized protein At3g14780) (Uncharacterized protein At3g14780/T21E2_3),Glucan synthase-like 4 FUNCTION: Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals (By similarity). {ECO:0000250}. ARA:AT3G14570-MONOMER;,ARA:AT3G14780-MONOMER; 2.4.1.34 228484,40797,226492,225337 Putative callose synthase 8 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 4),Callose synthase (Glycosyltransferase) (Uncharacterized protein At3g14780) (Uncharacterized protein At3g14780/T21E2_3),Glucan synthase-like 4 1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; regulation of cell shape [GO:0008360],transferase activity [GO:0016740],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075] locus:2089571;,locus:2099367; AT3G14570,AT3G14780 callose synthase NA NA NA NA NA NA NA ENOG411DRMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0546100 protein,Os07g0546100 protein (Fragment) Q7XIJ5,A0A0P0X7D6 Q7XIJ5_ORYSJ,A0A0P0X7D6_ORYSJ OJ1612_A04.102 P0006G05.105 Os07g0546100 OSNPB_070546100,Os07g0546100 OSNPB_070546100 ENOG411DRMQ RFC4,EMB1968 Q93ZX1,F4HY45,F4HY46,F4HY43 RFC4_ARATH,F4HY45_ARATH,F4HY46_ARATH,F4HY43_ARATH Replication factor C subunit 4 (AtRFC4) (Activator 1 subunit 4) (Protein EMBRYO DEFECTIVE 1968),ATPase family associated with various cellular activities (AAA) Embryo defective; Preglobular-D. Meinke-2003 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174411;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091; 37508,36634,36195,37986 Replication factor C subunit 4 (AtRFC4) (Activator 1 subunit 4) (Protein EMBRYO DEFECTIVE 1968),ATPase family associated with various cellular activities (AAA) DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261],ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA replication [GO:0006260],nucleolus [GO:0005730]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA replication [GO:0006260] locus:2036927; AT1G21690 replication factor C Replication factor C subunit 2 (OsRFC2) (Activator 1 subunit 2) Q9FXM3 RFC2_ORYSJ RFC2 Os12g0176500 LOC_Os12g07720 OsJ_35406 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. ENOG411DRMP CLC-B,CLC-A P92942,P92941,F4KIT3 CLCB_ARATH,CLCA_ARATH,F4KIT3_ARATH Chloride channel protein CLC-b (AtCLC-b) (CBS domain-containing protein CBSCLC7),Chloride channel protein CLC-a (AtCLC-a) (CBS domain-containing protein CBSCLC5),Chloride channel protein DISRUPTION PHENOTYPE: Loss-of-function mutation clca-1 leads to an altered nitrate content and hypersensitivity to chlorate. {ECO:0000269|PubMed:10758477}. Low nitrate levels under elevated nitrate-C. Maurel-2000 FUNCTION: Voltage-gated chloride channel.,FUNCTION: Voltage-gated chloride channel that could play a role in the regulation of nitrate content. {ECO:0000269|PubMed:10758477}. R-ATH-2672351; 85458,85406,70445 Chloride channel protein CLC-b (AtCLC-b) (CBS domain-containing protein CBSCLC7),Chloride channel protein CLC-a (AtCLC-a) (CBS domain-containing protein CBSCLC5),Chloride channel protein chloride channel complex [GO:0034707]; plant-type vacuole membrane [GO:0009705]; nitrate:proton symporter activity [GO:0009671]; voltage-gated chloride channel activity [GO:0005247]; chloride transmembrane transport [GO:1902476],chloride channel complex [GO:0034707]; intracellular [GO:0005622]; plant-type vacuole membrane [GO:0009705]; nitrate transmembrane transporter activity [GO:0015112]; nitrate:proton symporter activity [GO:0009671]; voltage-gated chloride channel activity [GO:0005247]; chloride transmembrane transport [GO:1902476]; chloride transport [GO:0006821]; nitrate transport [GO:0015706]; response to nitrate [GO:0010167],integral component of membrane [GO:0016021]; voltage-gated chloride channel activity [GO:0005247] TISSUE SPECIFICITY: Broadly expressed in the plant. locus:2095123;,locus:2164466; AT3G27170,AT5G40890 chloride channel Os12g0438600 protein A0A0P0Y9R2 A0A0P0Y9R2_ORYSJ Os12g0438600 OSNPB_120438600 ENOG411DRMS SCPL33,scpl33 Q9LSM9,A0A1I9LNP7 SCP33_ARATH,A0A1I9LNP7_ARATH Serine carboxypeptidase-like 33 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 54145,49887 Serine carboxypeptidase-like 33 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expressed in senescent leaves and flowers. {ECO:0000269|PubMed:15908604}. locus:2086137; AT3G17180 serine carboxypeptidase-like Serine carboxypeptidase-like 26 (OsSCP26) (EC 3.4.16.-) (Protein GRAIN SIZE 5),Carboxypeptidase (EC 3.4.16.-) Q5W727,Q5ZA26 SCP26_ORYSJ,Q5ZA26_ORYSJ SCP26 GS5 Os05g0158500 LOC_Os05g06660 OsJ_17198 OSJNBa0017J22.3,Os01g0332500 B1140D12.5 OSNPB_010332500 FUNCTION: Acts as positive regulator of grain size by controlling grain width, filling and weight. High expression of GS5 in the grain is correlated with large grain size. {ECO:0000269|PubMed:22019783, ECO:0000269|PubMed:25711711}. ENOG411DRMR Q84JN0 Q84JN0_ARATH Uncharacterized protein At5g25580 45971 Uncharacterized protein At5g25580 locus:2179494; AT5G25580 NA Os01g0180700 protein (cDNA, clone: J065037E24, full insert sequence) B7F8F6 B7F8F6_ORYSJ Os01g0180700 OSNPB_010180700 ENOG411DRMM MLO12,MLO2,MLO6 O80961,Q9SXB6,Q94KB7,A0A1P8AUH2,A0A1P8AUK5,F4HVC3,A0A1P8AMJ7,A0A1P8AUI9,F4HVC5,B3H6R0 MLO12_ARATH,MLO2_ARATH,MLO6_ARATH,A0A1P8AUH2_ARATH,A0A1P8AUK5_ARATH,F4HVC3_ARATH,A0A1P8AMJ7_ARATH,A0A1P8AUI9_ARATH,F4HVC5_ARATH,B3H6R0_ARATH MLO-like protein 12 (AtMlo12) (AtMlo18),MLO-like protein 2 (AtMlo2),MLO-like protein 6 (AtMlo6),MLO-like protein Resistant to powdery mildew-R. Panstruga-2006 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}.,FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. 66548,65544,67226,48293,47084,60141,58392,52836,67083,48139 MLO-like protein 12 (AtMlo12) (AtMlo18),MLO-like protein 2 (AtMlo2),MLO-like protein 6 (AtMlo6),MLO-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; defense response to fungus, incompatible interaction [GO:0009817]; leaf senescence [GO:0010150],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calmodulin binding [GO:0005516]; defense response to fungus, incompatible interaction [GO:0009817]; negative regulation of defense response [GO:0031348]; response to fungus [GO:0009620],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response to fungus, incompatible interaction [GO:0009817],integral component of membrane [GO:0016021]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2056113;,locus:2202064;,locus:2200883; AT2G39200,AT1G11310,AT1G61560 May be involved in modulation of pathogen defense and leaf cell death (By similarity) MLO protein homolog 1 (OsMLO1),MLO-like protein,Os05g0183566 protein,MLO-like protein (Fragment),Os10g0202350 protein Q0DC45,Q9SNK5,A0A0P0WIQ3,A0A0P0WWP1,A0A0P0XSU4 MLOH1_ORYSJ,Q9SNK5_ORYSJ,A0A0P0WIQ3_ORYSJ,A0A0P0WWP1_ORYSJ,A0A0P0XSU4_ORYSJ MLO1 MLO-H1 Os06g0486300 LOC_Os06g29110 OJ1568_D07.18 P0008F02.13,Os03g0129100 MLO LOC_Os03g03700 Os03g0129100 OsJ_09270 OSNPB_030129100,Os05g0183566 OSNPB_050183566,Os06g0486300 MLO OSNPB_060486300,Os10g0202350 OSNPB_100202350 FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}.,FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. ENOG411DRMI Q8GX26,A0A1I9LM24 Q8GX26_ARATH,A0A1I9LM24_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g11150) (Uncharacterized protein At3g11150/F11B9_109),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 41708,36277 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g11150) (Uncharacterized protein At3g11150/F11B9_109),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein locus:2074603; AT3G11150 NA Os01g0830500 protein (cDNA clone:001-203-A11, full insert sequence) (cDNA clone:006-308-F05, full insert sequence) Q5QLU1 Q5QLU1_ORYSJ Os01g0830500 Os01g0830500 B1088C09.46 OsJ_03956 OSNPB_010830500 P0446G04.19 ENOG411DRMH Q0WVK7 PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial 84552 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2031973; AT1G05670 Pentatricopeptide repeat-containing protein Os07g0513200 protein (Putative CRP1 protein) (cDNA clone:J033037I20, full insert sequence),Os07g0513200 protein (Fragment) Q84NV9,A0A0P0X6Z9 Q84NV9_ORYSJ,A0A0P0X6Z9_ORYSJ Os07g0513200 P0580A11.136 Os07g0513200 OSJNBb0041J06.117 OSNPB_070513200,Os07g0513200 OSNPB_070513200 ENOG411DRMK POP4 Q9ZW76,F4IQ79,F4IQ78 Q9ZW76_ARATH,F4IQ79_ARATH,F4IQ78_ARATH Expressed protein (Ribonuclease P family protein),Ribonuclease P family protein 33266,33166,29292 Expressed protein (Ribonuclease P family protein),Ribonuclease P family protein nucleolar ribonuclease P complex [GO:0005655]; ribonuclease MRP complex [GO:0000172]; ribonuclease P complex [GO:0030677]; ribonuclease activity [GO:0004540]; ribonuclease P RNA binding [GO:0033204]; mRNA cleavage [GO:0006379]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; rRNA processing [GO:0006364],nucleolar ribonuclease P complex [GO:0005655]; ribonuclease MRP complex [GO:0000172]; ribonuclease activity [GO:0004540]; RNA binding [GO:0003723]; mRNA cleavage [GO:0006379]; rRNA processing [GO:0006364]; tRNA processing [GO:0008033] locus:2041021; AT2G43190 ribonuclease P family protein Os05g0472300 protein (Fragment) A0A0P0WNQ0 A0A0P0WNQ0_ORYSJ Os05g0472300 OSNPB_050472300 ENOG411DRMJ TSF,FT Q9S7R5,Q9SXZ2,A0A1P8AMK0 TSF_ARATH,FT_ARATH,A0A1P8AMK0_ARATH Protein TWIN SISTER of FT (TFL1-like protein),Protein FLOWERING LOCUS T,PEBP (Phosphatidylethanolamine-binding protein) family protein Late flowering in short days.,Caused only a slight increase in leaf number under short-day conditions.,Phenotype not described.,Increased delay in flowering time compared to both parental single mutants. Late flowering under short days-T. Araki-2005,Late flowering-D. Weigel-1999 FUNCTION: May form complexes with phosphorylated ligands by interfering with kinases and their effectors. {ECO:0000250}.,FUNCTION: Component of the mobile flower-promoting signal (floral stimulus or florigen). Promotes the transition from vegetative growth to flowering. Required for 'SEPALLATA3' (SEP3) and 'FRUITFULL' (FUL) accumulation in mature rosette leaves. Seems to acts in parallel with 'LEAFY' to induce flowering by regulating 'APETALA1'. Translated in leaves and then transported to the shoot apical meristem where it activates the transcription of several floral meristem identity genes. May play a role in both the autonomous and the long-day flowering pathways. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:16155177}. "MISCELLANEOUS: Mutagenesis of Tyr-85 to His converts the activator of flowering ""FLOWERING LOCUS T"" into a ""TERMINAL FLOWER 1""-like repressor of flowering." R-ATH-5675221; 19688,19809,24849 Protein TWIN SISTER of FT (TFL1-like protein),Protein FLOWERING LOCUS T,PEBP (Phosphatidylethanolamine-binding protein) family protein cytoplasm [GO:0005737]; phosphatidylethanolamine binding [GO:0008429]; photoperiodism, flowering [GO:0048573]; positive regulation of flower development [GO:0009911],cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; phosphatidylethanolamine binding [GO:0008429]; cell differentiation [GO:0030154]; flower development [GO:0009908]; photoperiodism, flowering [GO:0048573]; positive regulation of flower development [GO:0009911]; regulation of flower development [GO:0009909]; regulation of stomatal movement [GO:0010119],phosphatidylethanolamine binding [GO:0008429]; photoperiodism, flowering [GO:0048573]; regulation of flower development [GO:0009909] DEVELOPMENTAL STAGE: Expression gradually increases with time under both long-day (LD) and short-day (SD) photoperiods. Under LD conditions, expression is first detected on day 4 and plateaued around day 6, preceeding floral commitment around days 9 and 10. TISSUE SPECIFICITY: Mostly localized in leaves vasculature. Transcripts can move in the phloem from leaves to shoot apex at a velocity between 1.2 and 3.5 mm/h. {ECO:0000269|PubMed:15618421, ECO:0000269|PubMed:16099949}. locus:2005521;,locus:2034168; AT4G20370,AT1G65480 protein HEADING DATE Protein RICE FLOWERING LOCUS T 1 (FLOWERING LOCUS T-like protein 3) (FT-like protein 3) (OsFTL3),Protein HEADING DATE 3A (FT-like protein A),Os01g0218500 protein (Putative SP3D),Os01g0218500 protein (Putative SP3D) (cDNA clone:J023149H16, full insert sequence),Os01g0218500 protein (Fragment) Q8VWH2,Q93WI9,Q5QNE2,Q5QNE3,A0A0P0UZQ4 RFT1_ORYSJ,HD3A_ORYSJ,Q5QNE2_ORYSJ,Q5QNE3_ORYSJ,A0A0P0UZQ4_ORYSJ RFT1 FTL3 Os06g0157500 LOC_Os06g06300 OsJ_20189 P0046E09.26 P0702F05.6,HD3A Os06g0157700 LOC_Os06g06320 OsJ_20191 P0046E09.30 P0702F05.10,P0665D10.27-2 Os01g0218500 P0489G09.12-2 OSNPB_010218500,P0665D10.27-1 P0489G09.12-1 Os01g0218500 OSNPB_010218500,Os01g0218500 OSNPB_010218500 FUNCTION: Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering. Promotes the transition from vegetative growth to flowering under long day (LD) conditions. Acts upstream of MADS14 and MADS15. May also participate in the promotion of flowering under short day (SD) conditions. {ECO:0000269|PubMed:18223202, ECO:0000269|PubMed:19762423}.,FUNCTION: Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering. Promotes the transition from vegetative growth to flowering downstream of HD1 and EHD1 under short day (SD) conditions. Acts upstream of MADS14 and MADS15. {ECO:0000269|PubMed:12407188, ECO:0000269|PubMed:17446351, ECO:0000269|PubMed:18223202, ECO:0000269|PubMed:19762423}. ENOG411DRME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os01g0730700 protein (Putative WRKY transcription factor) (WRKY transcription factor 14) (WRKY14) (cDNA clone:002-147-A06, full insert sequence) Q94EA8 Q94EA8_ORYSJ WRKY14 Os01g0730700 OSNPB_010730700 P0435H01.28 ENOG411DRMD T20K12.80 Q93Z92,Q8LDB8,Q9LN71,B9DH70,Q93YQ5,A0A1P8B8Y6 RING4_ARATH,RING2_ARATH,RING1_ARATH,B9DH70_ARATH,Q93YQ5_ARATH,A0A1P8B8Y6_ARATH E3 ubiquitin-protein ligase At4g11680 (EC 2.3.2.27) (RING finger protein At4g11680) (RING-type E3 ubiquitin transferase At4g11680),E3 ubiquitin-protein ligase At1g63170 (EC 2.3.2.27) (RING finger protein At1g63170) (RING-type E3 ubiquitin transferase At1g63170),E3 ubiquitin-protein ligase At1g12760 (EC 2.3.2.27) (RING finger protein At1g12760) (RING-type E3 ubiquitin transferase At1g12760),AT1G12760 protein (Zinc finger, C3HC4 type (RING finger) family protein),RING/U-box superfamily protein (Uncharacterized protein At3g61180; T20K12.80),Zinc finger, C3HC4 type (RING finger) family protein FUNCTION: Mediates E2-dependent protein ubiquitination in vitro. {ECO:0000269|PubMed:15644464}.,FUNCTION: Mediates E2-dependent protein ubiquitination. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 43741,42677,45086,37833,42488,47217 E3 ubiquitin-protein ligase At4g11680 (EC 2.3.2.27) (RING finger protein At4g11680) (RING-type E3 ubiquitin transferase At4g11680),E3 ubiquitin-protein ligase At1g63170 (EC 2.3.2.27) (RING finger protein At1g63170) (RING-type E3 ubiquitin transferase At1g63170),E3 ubiquitin-protein ligase At1g12760 (EC 2.3.2.27) (RING finger protein At1g12760) (RING-type E3 ubiquitin transferase At1g12760),AT1G12760 protein (Zinc finger, C3HC4 type (RING finger) family protein),RING/U-box superfamily protein (Uncharacterized protein At3g61180; T20K12.80),Zinc finger, C3HC4 type (RING finger) family protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2139717;,locus:2015248;,locus:2195077;,locus:2098916; AT4G11680,AT1G63170,AT1G12760,AT3G61180 E3 ubiquitin-protein ligase Os07g0463400 protein (Putative RES protein) (cDNA clone:J013113E15, full insert sequence),Os02g0674700 protein,Os04g0568900 protein (Fragment) Q7XIK9,Q0DYQ7,A0A0P0WDS1 Q7XIK9_ORYSJ,Q0DYQ7_ORYSJ,A0A0P0WDS1_ORYSJ OJ1634_H04.119 Os07g0463400 OsJ_24155 OSNPB_070463400,Os02g0674700 Os02g0674700 OSNPB_020674700,Os04g0568900 OSNPB_040568900 ENOG411DRMG RLT2,RLT1 Q9FFH1,F4HY56,F4K8S9 RLT2_ARATH,RLT1_ARATH,F4K8S9_ARATH Homeobox-DDT domain protein RLT2 (Protein RINGLET 2),Homeobox-DDT domain protein RLT1 (Protein HOMEOBOX-1) (Protein RINGLET 1),Homeodomain-like transcriptional regulator DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants rlt-1 and rlt2-1 are small and display early flowering. {ECO:0000269|PubMed:22694359}. FUNCTION: Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.,FUNCTION: Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. 190386,191990,169583 Homeobox-DDT domain protein RLT2 (Protein RINGLET 2),Homeobox-DDT domain protein RLT1 (Protein HOMEOBOX-1) (Protein RINGLET 1),Homeodomain-like transcriptional regulator nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. locus:2167628;,locus:2032505; AT5G44180,AT1G28420 DDT domain Os05g0562400 protein,Os05g0562400 protein (Fragment),Os01g0672300 protein (Fragment) Q688X7,A0A0P0WQK9,A0A0P0V6D7 Q688X7_ORYSJ,A0A0P0WQK9_ORYSJ,A0A0P0V6D7_ORYSJ Os05g0562400 Os05g0562400 OJ1115_B06.17 OSNPB_050562400,Os05g0562400 OSNPB_050562400,Os01g0672300 OSNPB_010672300 ENOG411DRMF LPPD,SPP1 Q9M2G7,F4J5V8 LPPD_ARATH,F4J5V8_ARATH Lipid phosphate phosphatase delta (AtLPPD) (EC 3.1.3.-) (Phosphatidic acid phosphatase delta) (Sphingoid phosphate phosphatase 1) (AtSSP1) (Sphingosine-1-phosphate phosphatase) (AtSPPASE),Phosphatidic acid phosphatase (PAP2) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased sensitivity to ABA in stomatal closure and decreased sensitivity to ABA-induced inhibition of primary root growth. {ECO:0000269|PubMed:21910031}. FUNCTION: Functions as sphingoid long-chain base phosphate (LCBP) phosphatase. May play a role in the regulation of LCBP levels and be involved in stomatal responses through LCBP-mediated ABA signaling. {ECO:0000269|PubMed:21910031}. ARA:AT3G58490-MONOMER; R-ATH-1660661; 3.1.3.- 46169,38312 Lipid phosphate phosphatase delta (AtLPPD) (EC 3.1.3.-) (Phosphatidic acid phosphatase delta) (Sphingoid phosphate phosphatase 1) (AtSSP1) (Sphingosine-1-phosphate phosphatase) (AtSPPASE),Phosphatidic acid phosphatase (PAP2) family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; response to abscisic acid [GO:0009737]; sphingolipid metabolic process [GO:0006665]; stomatal closure [GO:0090332],integral component of membrane [GO:0016021] locus:2076441; AT3G58490 phosphatase Os03g0805400 protein (Phosphatidic acid phosphatase family protein, putative, expressed) (Putative phosphatase) (cDNA clone:J023111M04, full insert sequence) (cDNA clone:J033086P22, full insert sequence),Os03g0805400 protein (Fragment) Q75HI8,A0A0P0W4C9 Q75HI8_ORYSJ,A0A0P0W4C9_ORYSJ Os03g0805400 LOC_Os03g59070 Os03g0805400 OsJ_13019 OSJNBb0015I02.16 OSNPB_030805400,Os03g0805400 OSNPB_030805400 ENOG411DRMA Q9C7J3,A0A1P8AMW9 Q9C7J3_ARATH,A0A1P8AMW9_ARATH ATP-dependent zinc metalloprotease (At1g56180/F14G9_20) (Uncharacterized protein F14G9.20),ATP-dependent zinc metalloprotease 42587,32367 ATP-dependent zinc metalloprotease (At1g56180/F14G9_20) (Uncharacterized protein F14G9.20),ATP-dependent zinc metalloprotease chloroplast [GO:0009507]; thylakoid membrane [GO:0042651]; metallopeptidase activity [GO:0008237]; leaf development [GO:0048366],metallopeptidase activity [GO:0008237] locus:2011861; AT1G56180 NA Os02g0169000 protein (cDNA clone:J033054L07, full insert sequence) Q6H6C9 Q6H6C9_ORYSJ Os02g0169000 OsJ_05542 OSNPB_020169000 P0669G09.17 ENOG411DRMC AP3 P35632 AP3_ARATH Floral homeotic protein APETALA 3 Homeotic floral transformations-E. Meyerowitz-1993 FUNCTION: Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms a heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP. {ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9489703}. MISCELLANEOUS: Mutations in AP3 cause transformation of petals into sepals and stamina into carpels. 27341 Floral homeotic protein APETALA 3 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; specification of floral organ identity [GO:0010093]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in petals and stamens. locus:2096164; AT3G54340 Transcription factor MADS-box transcription factor 16 (OsMADS16) (Protein APETALA3-like) (Protein SUPERWOMAN1) Q944S9 MAD16_ORYSJ MADS16 SPW1 Os06g0712700 LOC_Os06g49840 OJ1663_H12.32 P0712G01.7 FUNCTION: Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. MISCELLANEOUS: Inhibition of MADS16 expression by RNAi reduces expression of MADS4, and transforms lodicules and stamens into palea/lemma-like and carpel-like organs, respectively. ENOG411DRMB Q9M8R6,F4IAD5,A0A178VI02 Q9M8R6_ARATH,F4IAD5_ARATH,A0A178VI02_ARATH Eukaryotic aspartyl protease family protein (Putative aspartyl protease),Eukaryotic aspartyl protease family protein 52809,53297,44659 Eukaryotic aspartyl protease family protein (Putative aspartyl protease),Eukaryotic aspartyl protease family protein anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],anchored component of membrane [GO:0031225]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190] locus:2075512;,locus:2198753; AT3G02740,AT1G05840 aspartic proteinase-like protein Nucellin-like aspartic protease-like (Os02g0473200 protein),Os02g0473200 protein (Putative aspartic proteinase nepenthesin),Os04g0337000 protein (Fragment),Os04g0334700 protein (Os04g0336600 protein),Os04g0334700 protein (Os04g0334951 protein) (cDNA clone:002-146-G03, full insert sequence),Os05g0187600 protein Q6K6I0,Q6K6I2,Q0JE34,Q0JE37,B7F2P1,A0A0P0WJ75 Q6K6I0_ORYSJ,Q6K6I2_ORYSJ,Q0JE34_ORYSJ,Q0JE37_ORYSJ,B7F2P1_ORYSJ,A0A0P0WJ75_ORYSJ P0487H05.16-2 Os02g0473200 P0046H03.30-2 OSNPB_020473200,P0487H05.16-1 P0046H03.30-1 Os02g0473200 OSNPB_020473200,Os04g0337000 Os04g0337000 OSNPB_040337000,Os04g0334700 Os04g0336600 Os04g0334700 OSNPB_040334700 OSNPB_040336600,Os04g0334700 Os04g0334951 OSNPB_040334700 OSNPB_040334951,Os05g0187600 OSNPB_050187600 ENOG411EI94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Multicopper oxidase Os10g0493700 protein,Os05g0596850 protein,Os10g0496400 protein Q8LNS9,A0A0P0WRA4,A0A0P0XWD5 Q8LNS9_ORYSJ,A0A0P0WRA4_ORYSJ,A0A0P0XWD5_ORYSJ OSJNBa0041P03.19 Os10g0493700 LOC_Os10g35120 OsJ_32008 OSNPB_100493700,Os05g0596850 OSNPB_050596850,Os10g0496400 OSNPB_100496400 ENOG411EIVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 Ubiquitin ligase NA NA NA NA NA NA NA ENOG411EIVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIVK F14O13.27 Q940K6 Q940K6_ARATH At3g24060 (Uncharacterized protein At3g24060; F14O13.27) (Zinc knuckle (CCHC-type) family protein) 28158 At3g24060 (Uncharacterized protein At3g24060; F14O13.27) (Zinc knuckle (CCHC-type) family protein) nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2076106; AT3G24070 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ty3-gypsy subclass Os12g0282583 protein A0A0P0Y9M4 A0A0P0Y9M4_ORYSJ Os12g0282583 OSNPB_120282583 ENOG411EIVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0260550 protein B9G2F1 B9G2F1_ORYSJ Os09g0260550 OsJ_28576 OSNPB_090260550 ENOG411EIVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: atp-dependent rna helicase NA NA NA NA NA NA NA ENOG411EIVT HR2 Q9SCS8 HR2_ARATH RPW8-like protein 2 (AtHR2) FUNCTION: Probable disease resistance (R) protein. {ECO:0000305}. 23441 RPW8-like protein 2 (AtHR2) integral component of membrane [GO:0016021]; plant-type hypersensitive response [GO:0009626]; response to fungus [GO:0009620] locus:2098715; AT3G50460 Arabidopsis broad-spectrum mildew resistance protein RPW8 NA NA NA NA NA NA NA ENOG411EIVU F4I9X5 F4I9X5_ARATH Transmembrane protein 12769 Transmembrane protein integral component of membrane [GO:0016021] locus:504956098; AT1G65342 NA NA NA NA NA NA NA NA ENOG411EIVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gem-associated protein 7 (Gemin7) NA NA NA NA NA NA NA ENOG411EDFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EIV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycine-rich protein GRP22-like (Os02g0651900 protein) (cDNA clone:J033055A02, full insert sequence) (cDNA clone:J033115D03, full insert sequence) Q6H3Y0 Q6H3Y0_ORYSJ Os02g0651900 OsJ_07757 OSJNBb0012J10.30 OSNPB_020651900 P0491E01.8 ENOG411EIV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WGS project CAID00000000 data contig chromosome 02 NA NA NA NA NA NA NA ENOG411EIV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0638500 protein,Os08g0528400 protein,Os11g0638600 protein,Expressed protein (Os11g0489425 protein),Os12g0481601 protein (Os12g0481900 protein) (Os12g0482300 protein),Os10g0351050 protein,Os03g0160900 protein (Fragment) Q2R0N8,Q6ZIC0,B9G8G3,Q2R445,A3CHC6,A0A0P0XT57,A0A0P0VTB4 Q2R0N8_ORYSJ,Q6ZIC0_ORYSJ,B9G8G3_ORYSJ,Q2R445_ORYSJ,A3CHC6_ORYSJ,A0A0P0XT57_ORYSJ,A0A0P0VTB4_ORYSJ Os11g0638500 LOC_Os11g41950 OsJ_34554 OSNPB_110638500,Os08g0528400 OJ1770_H02.8 OsJ_28030 OSNPB_080528400,Os11g0638600 OsJ_34555 OSNPB_110638600,Os11g0489425 LOC_Os11g29740 OsJ_33921 OSNPB_110489425,Os12g0482300 Os12g0481601 Os12g0481900 OsJ_36096 OSNPB_120481601 OSNPB_120481900 OSNPB_120482300,Os10g0351050 OSNPB_100351050,Os03g0160900 OSNPB_030160900 ENOG411EIV3 Q2V4A4,Q2V4A3,P0CAY8 DF294_ARATH,DF293_ARATH,DF292_ARATH Defensin-like protein 294,Defensin-like protein 293,Defensin-like protein 292 10435,10029,7752 Defensin-like protein 294,Defensin-like protein 293,Defensin-like protein 292 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023211;,locus:1009023214; AT2G04034,AT2G04925,AT2G04033 cell killing NA NA NA NA NA NA NA ENOG411EIV6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0357000 protein,OSJNBb0066J23.11 protein (Os04g0356000 protein) B9FEM3,Q7XVI7 B9FEM3_ORYSJ,Q7XVI7_ORYSJ Os04g0357000 OsJ_14405 OSNPB_040357000,Os04g0356000 OsJ_14402 OSJNBb0066J23.11 OSNPB_040356000 ENOG411EIV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7R1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0710001 protein Q5Z9G7 Q5Z9G7_ORYSJ P0655A07.22 Os06g0710001 OSNPB_060710001 ENOG411E7R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0448700 protein) (cDNA clone:J013161J11, full insert sequence) Q53JF1 Q53JF1_ORYSJ Os11g0448700 LOC_Os11g26190 Os11g0448700 OsJ_13742 OSNPB_110448700 ENOG411E7R8 PAR1,PAR2 Q9SJH0,Q9LXR7 PAR1_ARATH,PAR2_ARATH Transcription factor PAR1 (Basic helix-loop-helix protein 165) (AtbHLH165) (bHLH 165) (Protein HELIX-LOOP-HELIX 1) (Protein PHYTOCHROME RAPIDLY REGULATED 1) (bHLH transcription factor bHLH165),Transcription factor PAR2 (Basic helix-loop-helix protein 166) (AtbHLH166) (bHLH 166) (Protein HELIX-LOOP-HELIX 2) (Protein PHYTOCHROME RAPIDLY REGULATED 2) (bHLH transcription factor bHLH166) DISRUPTION PHENOTYPE: Slight increase in the length of hypocotyls, cotyledons and primary leaves. {ECO:0000269|PubMed:17948056}. Increased branching; Reduced fertility-J. Martinez-Garcia-2007 FUNCTION: Atypical bHLH transcription factor that acts as negative regulator of a variety of shade avoidance syndrome (SAS) responses, including seedling elongation and photosynthetic pigment accumulation. Acts as direct transcriptional repressor of two auxin-responsive genes, SAUR15 and SAUR68. May function in integrating shade and hormone transcriptional networks in response to light and auxin changes. {ECO:0000269|PubMed:17948056, ECO:0000269|PubMed:21205034}.,FUNCTION: Atypical bHLH transcription factor that acts as negative regulator of a variety of shade avoidance syndrome (SAS) responses, including seedling elongation and photosynthetic pigment accumulation. Acts as direct transcriptional repressor of two auxin-responsive genes, SAUR15 and SAUR68. May function in integrating shade and hormone transcriptional networks in response to light and auxin changes. {ECO:0000269|PubMed:17948056}. MISCELLANEOUS: Plants overexpressing PAR1 are dwarf with compact rosettes and inflorescences, epinastic leaves, shorter flowering stems and siliques and a general dark-green phenotype. Plants silencing PAR1 exhibit a slight increase in the length of hypocotyls, cotyledons and primary leaves (PubMed:17948056). {ECO:0000305|PubMed:17948056}.,MISCELLANEOUS: Plants overexpressing PAR1 are dwarf with compact rosettes and inflorescences, epinastic leaves, shorter flowering stems and siliques and a general dark-green phenotype. {ECO:0000305|PubMed:17948056}. 13151,12872 Transcription factor PAR1 (Basic helix-loop-helix protein 165) (AtbHLH165) (bHLH 165) (Protein HELIX-LOOP-HELIX 1) (Protein PHYTOCHROME RAPIDLY REGULATED 1) (bHLH transcription factor bHLH165),Transcription factor PAR2 (Basic helix-loop-helix protein 166) (AtbHLH166) (bHLH 166) (Protein HELIX-LOOP-HELIX 2) (Protein PHYTOCHROME RAPIDLY REGULATED 2) (bHLH transcription factor bHLH166) nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; transcription cofactor activity [GO:0003712]; brassinosteroid mediated signaling pathway [GO:0009742]; developmental process [GO:0032502]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of growth [GO:0040008]; shade avoidance [GO:0009641]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; brassinosteroid mediated signaling pathway [GO:0009742]; circadian rhythm [GO:0007623]; developmental process [GO:0032502]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; shade avoidance [GO:0009641]; transcription, DNA-templated [GO:0006351] locus:2052372;,locus:2099004; AT2G42870,AT3G58850 phy rapidly regulated NA NA NA NA NA NA NA ENOG411E7R9 Q9SKM7 Q9SKM7_ARATH At2g28430/T1B3.5 (Expressed protein) (Zinc finger, C3HC4 type family protein) 9786 At2g28430/T1B3.5 (Expressed protein) (Zinc finger, C3HC4 type family protein) plastid [GO:0009536] locus:2057512; AT2G28430 NA Os10g0481400 protein,Os10g0481400 protein (Fragment) B9G6A7,A0A0P0XVT9 B9G6A7_ORYSJ,A0A0P0XVT9_ORYSJ Os10g0481400 OsJ_31918 OSNPB_100481400,Os10g0481400 OSNPB_100481400 ENOG411E7RF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: mitochondrial import receptor subunit TOM6 homolog Os03g0626200 protein B9F9T3 B9F9T3_ORYSJ Os03g0626200 OsJ_11796 OSNPB_030626200 ENOG411E7RD F4JEW3 F4JEW3_ARATH Transmembrane protein 15382 Transmembrane protein integral component of membrane [GO:0016021] locus:2091985; AT3G27030 Protein of unknown function (DUF3339) Os02g0509500 protein (cDNA clone:001-106-F09, full insert sequence) Q0E0Z7 Q0E0Z7_ORYSJ Os02g0509500 Os02g0509500 OsJ_06866 OSNPB_020509500 ENOG411E7RE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0517400 protein (cDNA clone:002-115-H04, full insert sequence) Q75II6 Q75II6_ORYSJ Os05g0517400 Os05g0517400 B1130G10.16 OSNPB_050517400 ENOG411E7RK BIC1 Q9LXJ1 BIC1_ARATH Protein BIC1 (BLUE-LIGHT INHIBITOR OF CRYPTOCHROMES 1) DISRUPTION PHENOTYPE: No visible phenotype. Bic1 and bic2 double mutants have a blue light-hypersensitive short-hypocotyl phenotype and an increased anthocyanin accumulation when grown in continuous blue light. {ECO:0000269|PubMed:27846570}. FUNCTION: Regulates the blue-light dependent dimerization of CRY2 and formation of photobodies. Interacts with photoexited CRY2 to inhibit its activity. Inhibits CRY phosphorylation. {ECO:0000269|PubMed:27846570}. 15512 Protein BIC1 (BLUE-LIGHT INHIBITOR OF CRYPTOCHROMES 1) nucleus [GO:0005634]; response to karrikin [GO:0080167] locus:2083243; AT3G52740 NA OSJNBa0073L04.6 protein (Os04g0412100 protein) (cDNA clone:002-140-E12, full insert sequence) Q7XVG6 Q7XVG6_ORYSJ Os04g0412100 Os04g0412100 OSJNBa0073L04.6 OSNPB_040412100 ENOG411E7RN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0323860 protein (Os11g0412484 protein) B9GCL3 B9GCL3_ORYSJ Os11g0412484 Os11g0323860 OsJ_35728 OSNPB_110323860 OSNPB_110412484 ENOG411E7RM O80506 O80506_ARATH At2g44670/F16B22.16 (Expressed protein) (Senescence-associated family protein (DUF581)) (Uncharacterized protein At2g44670) 10522 At2g44670/F16B22.16 (Expressed protein) (Senescence-associated family protein (DUF581)) (Uncharacterized protein At2g44670) locus:2042416; AT2G44670 Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E7RS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7RQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0381500 protein) (cDNA clone:002-139-D04, full insert sequence) Q75M70 Q75M70_ORYSJ LOC_Os03g26490 Os03g0381500 OsJ_11069 OSJNBa0011H24.15 OSNPB_030381500 ENOG411E7RV MIP1A Q1G3I2 MIP1A_ARATH B-box domain protein 30 (AtBBX30) (Microprotein 1A) FUNCTION: Developmental regulator acting by forming heterodimeric complexes, that sequester CO and CO-like (COL) proteins into non-functional complexes. Engages CO and the transcriptional repressor TPL in a tripartite complex. Involved in the CO-mediated long-day flowering-promotion pathway. {ECO:0000269|PubMed:27015278}. 13562 B-box domain protein 30 (AtBBX30) (Microprotein 1A) nucleus [GO:0005634]; protein binding, bridging [GO:0030674]; zinc ion binding [GO:0008270]; circadian rhythm [GO:0007623]; regulation of flower development [GO:0009909] TISSUE SPECIFICITY: Highly expressed in shoot apical meristems and in vascular tissues of leaves. Also detected in petioles. {ECO:0000269|PubMed:27015278}. locus:1009023318; AT4G15248 B-box zinc finger NA NA NA NA NA NA NA ENOG411E7RW F28K20.13 Q9SA13 Q9SA13_ARATH At1g31175 (Cytochrome C oxidase biogenesis Cmc1-like protein) (F28K20.13) 13493 At1g31175 (Cytochrome C oxidase biogenesis Cmc1-like protein) (F28K20.13) locus:504956237; AT1G31175 NA Os07g0567500 protein Q84SM2 Q84SM2_ORYSJ OJ1092_A07.117 Os07g0567500 OsJ_24785 OSNPB_070567500 ENOG411E7RT Q5S4W8,A0A1P8B0T9 Q5S4W8_ARATH,A0A1P8B0T9_ARATH Uncharacterized protein 34112,28492 Uncharacterized protein locus:504956052; AT2G32235 NA NA NA NA NA NA NA NA ENOG411E7RZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7RX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0551600 protein (cDNA clone:001-111-C10, full insert sequence) Q6ZI38 Q6ZI38_ORYSJ Os02g0551600 OJ1004_H01.12 OSNPB_020551600 ENOG411E7RY LTP2 Q9S7I3 NLTP2_ARATH Non-specific lipid-transfer protein 2 (LTP 2) (Protein CELL GROWTH DEFECT FACTOR 3) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 11938 Non-specific lipid-transfer protein 2 (LTP 2) (Protein CELL GROWTH DEFECT FACTOR 3) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; lipid binding [GO:0008289]; lipid transport [GO:0006869]; phospholipid transfer to membrane [GO:0006649]; response to water deprivation [GO:0009414] locus:2064107; AT2G38530 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E9PK CRF1 O82503 CRF1_ARATH Ethylene-responsive transcription factor CRF1 (Protein CYTOKININ RESPONSE FACTOR 1) FUNCTION: Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. 31545 Ethylene-responsive transcription factor CRF1 (Protein CYTOKININ RESPONSE FACTOR 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; ethylene-activated signaling pathway [GO:0009873]; leaf development [GO:0048366]; transcription factor import into nucleus [GO:0042991]; transcription, DNA-templated [GO:0006351] locus:2136078; AT4G11140 AP2 NA NA NA NA NA NA NA ENOG411E9PY TET12 Q9FN51 TET12_ARATH Tetraspanin-12 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 29499 Tetraspanin-12 integral component of membrane [GO:0016021] locus:2178327; AT5G23030 Tetraspanin family NA NA NA NA NA NA NA ENOG411ECEV T32N4.7 Q9S9T8 Q9S9T8_ARATH AT4g04990 protein (Serine/arginine repetitive matrix-like protein (DUF761)) (T32N4.7 protein) 34261 AT4g04990 protein (Serine/arginine repetitive matrix-like protein (DUF761)) (T32N4.7 protein) integral component of membrane [GO:0016021] locus:2138416; AT4G04990 Cotton fibre expressed protein NA NA NA NA NA NA NA ENOG411ECER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin carboxyl-terminal hydrolase Os08g0527300 protein (cDNA clone:J033070M04, full insert sequence) B7F7L1 B7F7L1_ORYSJ Os08g0527300 OSNPB_080527300 ENOG411ECEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411ECEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0291475 protein A0A0N7KSS5 A0A0N7KSS5_ORYSJ Os11g0291475 OSNPB_110291475 ENOG411ECEJ Q5BPT7,Q5PNU4,Q9LSP6 Y2621_ARATH,Y2531_ARATH,Y3701_ARATH B3 domain-containing protein At2g16210,B3 domain-containing protein At2g35310,B3 domain-containing protein At3g17010 33217,33214,35287 B3 domain-containing protein At2g16210,B3 domain-containing protein At2g35310,B3 domain-containing protein At3g17010 nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2052991;,locus:2063434;,locus:2086082; AT2G16210,AT2G35310,AT3G17010 Transcriptional factor B3 family protein NA NA NA NA NA NA NA ENOG411EEG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferrous iron transport protein B NA NA NA NA NA NA NA ENOG411EEG2 T18N14.80 Q9SCT8,Q45GK3 Q9SCT8_ARATH,Q45GK3_ARATH PIF1 helicase (Uncharacterized protein T18N14.80),PIF1 helicase 39253,37416 PIF1 helicase (Uncharacterized protein T18N14.80),PIF1 helicase DNA helicase activity [GO:0003678]; DNA repair [GO:0006281]; telomere maintenance [GO:0000723] locus:2098297;,locus:2098292; AT3G51700,AT3G51690 Pfam:DUF889 Os04g0126800 protein Q0JF95 Q0JF95_ORYSJ Os04g0126800 Os04g0126800 OSNPB_040126800 ENOG411EEG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA f-box family NA NA NA NA NA NA NA ENOG411EEG7 Q66GI1 CSPLT_ARATH CASP-like protein 5C1 (AtCASPL5C1) 16548 CASP-like protein 5C1 (AtCASPL5C1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:1006230287; AT4G37235 Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411EEG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EEG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EEG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH Os04g0172520 protein,Os04g0172480 protein A0A0P0W753,A0A0P0W6S1 A0A0P0W753_ORYSJ,A0A0P0W6S1_ORYSJ Os04g0172520 OSNPB_040172520,Os04g0172480 OSNPB_040172480 ENOG411EEG8 BHLH146 Q9SUM5 BH146_ARATH Transcription factor bHLH146 (Basic helix-loop-helix protein 146) (AtbHLH146) (bHLH 146) (Transcription factor EN 141) (bHLH transcription factor bHLH146) 17809 Transcription factor bHLH146 (Basic helix-loop-helix protein 146) (AtbHLH146) (bHLH 146) (Transcription factor EN 141) (bHLH transcription factor bHLH146) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2128931; AT4G30180 Transcription factor transcription regulator NA NA NA NA NA NA NA ENOG411EEGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family Os02g0672500 protein (Fragment) A0A0P0VMT4 A0A0P0VMT4_ORYSJ Os02g0672500 OSNPB_020672500 ENOG411EEGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle NA NA NA NA NA NA NA ENOG411EEGQ VUP2 Q9C6I7,A0A1P8AMA6 Q9C6I7_ARATH,A0A1P8AMA6_ARATH Serine/Threonine-kinase (Uncharacterized protein F8A12.15),Serine/Threonine-kinase FUNCTION: Involved in the regulation of plant growth. {ECO:0000269|PubMed:24567189}. MISCELLANEOUS: Plants overexpressing VUP2 exhibit severe dwarfism. {ECO:0000269|PubMed:24567189}. 22697,21751 Serine/Threonine-kinase (Uncharacterized protein F8A12.15),Serine/Threonine-kinase kinase activity [GO:0016301] locus:2036457; AT1G50930 NA NA NA NA NA NA NA NA ENOG411EEGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0671100 protein (cDNA clone:002-146-G06, full insert sequence) Q6ESP4 Q6ESP4_ORYSJ Os02g0671100 Os02g0671100 OsJ_07885 OSNPB_020671100 P0684A08.38 ENOG411EEGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cell division control protein 14 SIN component NA NA NA NA NA NA NA ENOG411EEGU F4I3X8 F4I3X8_ARATH Transmembrane protein, putative (DUF1163) 21476 Transmembrane protein, putative (DUF1163) integral component of membrane [GO:0016021] locus:2020693; AT1G70120 Protein of unknown function (DUF1163) NA NA NA NA NA NA NA ENOG411EEGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA H2A NA NA NA NA NA NA NA ENOG411EEGX T5P19_180,T26I12.90 Q9LXY7,Q9M3C9 Q9LXY7_ARATH,Q9M3C9_ARATH NAC domain containing protein 64 (NAM-like protein),NAC domain containing protein 63 (NAM (No apical meristem)-like protein) (Uncharacterized protein At3g55210) 36756,31824 NAC domain containing protein 64 (NAM-like protein),NAC domain containing protein 63 (NAM (No apical meristem)-like protein) (Uncharacterized protein At3g55210) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2102624;,locus:2100626; AT3G56530,AT3G55210 nac domain protein NA NA NA NA NA NA NA ENOG411EEGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EEGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EEGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized conserved protein (DUF2196) NA NA NA NA NA NA NA ENOG411EEGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411EEGF DD11,MEC18.12,DD18 Q9C924,Q9LKB8,Q9LHM2,Q9MAJ0,Q3E6Z0,Q3E6U3,Q3ECV9,Q3ECV8 DD11_ARATH,Q9LKB8_ARATH,Q9LHM2_ARATH,Q9MAJ0_ARATH,Q3E6Z0_ARATH,Q3E6U3_ARATH,Q3ECV9_ARATH,Q3ECV8_ARATH Protein DOWN-REGULATED IN DIF1 11,ECA1 gametogenesis family protein (DUF784) (Genomic DNA, chromosome 5, BAC clone:F6I13),ECA1 gametogenesis family protein (DUF784),Downregulated in DIF1 18 (F27F5.27),Prolamin-like protein (DUF784) 16772,16922,19566,19468,16833,16843,19409,19543 Protein DOWN-REGULATED IN DIF1 11,ECA1 gametogenesis family protein (DUF784) (Genomic DNA, chromosome 5, BAC clone:F6I13),ECA1 gametogenesis family protein (DUF784),Downregulated in DIF1 18 (F27F5.27),Prolamin-like protein (DUF784) filiform apparatus [GO:0043680] TISSUE SPECIFICITY: Mostly expressed in embryo sac cells (PubMed:17915010). Restricted to synergid cells, especially in the filiform apparatus of mature female gametophyte, via MYB98-mediated transcription regulation (PubMed:17693534, PubMed:18410484). Also detected at low levels in egg and central cells (PubMed:17693534). {ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17915010, ECO:0000269|PubMed:18410484}. locus:2011546;,locus:4010713986;,locus:2099282;,locus:2028230;,locus:505006453;,locus:505006451;,locus:2015373;,locus:2015348; AT1G52970,AT5G35405,AT3G11990,AT1G45190,AT4G13263,AT4G13261,AT1G47450,AT1G47470 Pfam:DUF784 NA NA NA NA NA NA NA ENOG411EEGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EEGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0128300 protein (cDNA clone:J013095J19, full insert sequence),Os07g0516500 protein (cDNA clone:001-133-A01, full insert sequence) (cDNA clone:J023050A19, full insert sequence),Os07g0516500 protein (Fragment),Os07g0516500 protein,Os02g0696600 protein (Fragment) Q0JF88,Q0D625,A0A0P0X6K4,A0A0P0X6T6,A0A0P0VNB4 Q0JF88_ORYSJ,Q0D625_ORYSJ,A0A0P0X6K4_ORYSJ,A0A0P0X6T6_ORYSJ,A0A0P0VNB4_ORYSJ Os04g0128300 Os04g0128300 OSNPB_040128300,Os07g0516500 Os07g0516500 OsJ_29130 OSNPB_070516500,Os07g0516500 OSNPB_070516500,Os02g0696600 OSNPB_020696600 ENOG411EEGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EEGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyketide cyclase / dehydrase and lipid transport NA NA NA NA NA NA NA ENOG411EEGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411EEGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor NA NA NA NA NA NA NA ENOG411DVCK VHA-d1,VHA-d2 Q9LJI5,Q9LHA4,F4J0D8 VA0D1_ARATH,VA0D2_ARATH,F4J0D8_ARATH V-type proton ATPase subunit d1 (V-ATPase subunit d1) (Vacuolar H(+)-ATPase subunit d isoform 1) (Vacuolar proton pump subunit d1),V-type proton ATPase subunit d2 (V-ATPase subunit d2) (Vacuolar H(+)-ATPase subunit d isoform 2) (Vacuolar proton pump subunit d2),V-type proton ATPase subunit FUNCTION: Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.,FUNCTION: Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. {ECO:0000256|PIRNR:PIRNR018497}. R-ATH-1222556;R-ATH-77387;R-ATH-917977; 40792,40788,40045 V-type proton ATPase subunit d1 (V-ATPase subunit d1) (Vacuolar H(+)-ATPase subunit d isoform 1) (Vacuolar proton pump subunit d1),V-type proton ATPase subunit d2 (V-ATPase subunit d2) (Vacuolar H(+)-ATPase subunit d isoform 2) (Vacuolar proton pump subunit d2),V-type proton ATPase subunit Golgi apparatus [GO:0005794]; lysosomal membrane [GO:0005765]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuole [GO:0005773]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035]; vacuolar transport [GO:0007034],Golgi apparatus [GO:0005794]; lysosomal membrane [GO:0005765]; plasmodesma [GO:0009506]; proton-transporting V-type ATPase, V0 domain [GO:0033179]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuole [GO:0005773]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; vacuolar acidification [GO:0007035]; vacuolar transport [GO:0007034],proton-transporting V-type ATPase, V0 domain [GO:0033179]; hydrogen ion transmembrane transporter activity [GO:0015078]; ATP hydrolysis coupled proton transport [GO:0015991] locus:2095482;,locus:2095492; AT3G28710,AT3G28715 V-type proton ATPase subunit Probable V-type proton ATPase subunit d (V-ATPase subunit d) (Vacuolar proton pump subunit d) Q8RU33 VA0D_ORYSJ Os01g0587000 LOC_Os01g40470 OsJ_02396 P0700A11.10 FUNCTION: Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. ENOG411DVCJ ADNT1 O04619,A0A1P8B4I5,F4JHS4 ADNT1_ARATH,A0A1P8B4I5_ARATH,F4JHS4_ARATH Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1),Adenine nucleotide transporter 1 DISRUPTION PHENOTYPE: Reduced root growth and respiration. {ECO:0000269|PubMed:18923018}. Homozygotes have shorter roots than WT. Respiration rates are significantly lower than in WT roots. Slightly shorter roots; Decreased cellular respiration-F. Palmieri-2008 FUNCTION: Mitochondrial adenylate carrier that catalyzes specifically the transport of ATP, ADP and AMP by a counter-exchange mechanism across the inner mitochondrial membrane. Substrate preference in reconstituted proteoliposomes is ATP > AMP > ADP. May play a role in oxidative phosphorylation and be important for the provision of energy required to support growth in heterotrophic tissues. {ECO:0000269|PubMed:18923018}. 38325,33271,39978 Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1),Adenine nucleotide transporter 1 integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrial transport [GO:0006839]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; ADP transmembrane transporter activity [GO:0015217]; AMP transmembrane transporter activity [GO:0080122]; ATP transmembrane transporter activity [GO:0005347]; ADP transport [GO:0015866]; aerobic respiration [GO:0009060]; AMP transport [GO:0080121]; ATP transport [GO:0015867] TISSUE SPECIFICITY: Expressed in seedling radicles and roots, vasculature of cotyledons, leaf primordia, leaves and sepals. {ECO:0000269|PubMed:18923018}. locus:2125073; AT4G01100 mitochondrial substrate carrier family protein Os05g0585900 protein (Putative peroxisomal Ca-dependent solute carrier) (cDNA clone:J013000H16, full insert sequence) Q6I583 Q6I583_ORYSJ Os05g0585900 Os05g0585900 OsJ_19712 OSJNBa0009C07.13 OSNPB_050585900 ENOG411DVCI PERK13,PERK12 Q9CAL8,Q9ZUE0,Q9CAL9,A0A1P8AM77 PEK13_ARATH,PEK12_ARATH,Q9CAL9_ARATH,A0A1P8AM77_ARATH Proline-rich receptor-like protein kinase PERK13 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 13) (AtPERK13) (Protein ROOT HAIR SPECIFIC 10),Proline-rich receptor-like protein kinase PERK12 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 12) (AtPERK12) (Protein INFLORESCENCE GROWTH INHIBITOR 1),Protein kinase superfamily protein (Uncharacterized protein F24J13.2),Protein kinase superfamily protein DISRUPTION PHENOTYPE: Longer root hairs. {ECO:0000269|PubMed:19448035, ECO:0000269|Ref.7}. Increased axillary branching reduced stature reduced fertility. Long root hairs-H. Cho-2009 FUNCTION: Regulates negatively root hairs elongation. {ECO:0000269|PubMed:19448035, ECO:0000269|Ref.7}.,FUNCTION: Regulates the auxin-related MAX (More Axillary Growth) pathway during the shoot branching. {ECO:0000269|PubMed:20473553}. 2.7.11.1 75372,76302,43905,55846 Proline-rich receptor-like protein kinase PERK13 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 13) (AtPERK13) (Protein ROOT HAIR SPECIFIC 10),Proline-rich receptor-like protein kinase PERK12 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 12) (AtPERK12) (Protein INFLORESCENCE GROWTH INHIBITOR 1),Protein kinase superfamily protein (Uncharacterized protein F24J13.2),Protein kinase superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase binding [GO:0019901]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; developmental process [GO:0032502]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Mostly expressed in roots, especially in root hairs. {ECO:0000269|PubMed:15653807, ECO:0000269|PubMed:19448035}.,TISSUE SPECIFICITY: Mostly expressed in apical parts, including flower buds, and particularly in anthers. Also present in root hairs. {ECO:0000269|PubMed:15653807, ECO:0000269|PubMed:20473553}. locus:2026846;,locus:2028911;,locus:2016154; AT1G70460,AT1G23540,AT1G70450 proline-rich receptor-like protein kinase Os06g0486000 protein (cDNA clone:J023023P10, full insert sequence),Os03g0568800 protein (Transposon protein, putative, CACTA, En/Spm sub-class, expressed) (cDNA clone:J023048I16, full insert sequence) (cDNA clone:J023105H10, full insert sequence) Q67W44,Q10I10 Q67W44_ORYSJ,Q10I10_ORYSJ Os06g0486000 Os06g0486000 OJ1568_D07.15 OSNPB_060486000 P0008F02.10,LOC_Os03g37120 Os03g0568800 OSNPB_030568800 ENOG411DVCH F4IJF7 F4IJF7_ARATH Cysteine/Histidine-rich C1 domain family protein 27341 Cysteine/Histidine-rich C1 domain family protein cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2052966; AT2G16050 C1-like domain Os12g0596300 protein C7JA40 C7JA40_ORYSJ Os12g0596300 Os12g0596300 OSNPB_120596300 ENOG411DVCN Q9LQQ3,Q9SIA7 Q9LQQ3_ARATH,Q9SIA7_ARATH At1g07750/F24B9_13 (F24B9.13 protein) (Putative globulin protein) (RmlC-like cupins superfamily protein),Cupin family protein (Legumin-like protein) (RmlC-like cupins superfamily protein) 38311,38465 At1g07750/F24B9_13 (F24B9.13 protein) (Putative globulin protein) (RmlC-like cupins superfamily protein),Cupin family protein (Legumin-like protein) (RmlC-like cupins superfamily protein) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; nutrient reservoir activity [GO:0045735]; zinc ion binding [GO:0008270],nutrient reservoir activity [GO:0045735] locus:2026545;,locus:2065516; AT1G07750,AT2G28680 glutelin type-A 1-like Os05g0116000 protein (Putative legumin) (cDNA clone:001-014-A11, full insert sequence) (cDNA clone:J033092N18, full insert sequence),Os01g0976200 protein (Putative prepro-glutelin) (cDNA clone:006-204-D01, full insert sequence) Q65XA1,Q94CS6 Q65XA1_ORYSJ,Q94CS6_ORYSJ Os05g0116000 Os05g0116000 OJ1654_B10.17 OSNPB_050116000 P0496H07.7,Os01g0976200 OSNPB_010976200 P0020E09.3 P0459B04.33 ENOG411DVCM LFG2,LFG3,LFG4,AtLFG3 Q9M1V9,Q9ZQX7,Q9SA63,A0A1P8B7U7 LFG2_ARATH,LFG3_ARATH,LFG4_ARATH,A0A1P8B7U7_ARATH Protein LIFEGUARD 2 (AtLFG2) (Protein BRZ-INSENSITIVE-LONG HYPOCOTYLS 4),Protein LIFEGUARD 3 (AtLFG3),Protein LIFEGUARD 4 (AtLFG4),Bax inhibitor-1 family protein DISRUPTION PHENOTYPE: Delayed development of the powdery mildew fungus E.cruciferarum. Increased cell death upon A.alternata f.sp. lycopersici (AAL) toxin treatment. {ECO:0000269|PubMed:23888068}. Mutants showed longer hypocotyls and closed cotyledons when grown in the dark on a medium containing Brz. After 2-3 weeks in the light mutants showed narrow outward-curving leaves and total leaf expansion was suppressed. After 42 days at termination of flowering there were 2- to 2.5- fold more inflorescences and branches than in wild type. FUNCTION: Regulates the brassinosteroid (BR) signaling pathway that mediates cell elongation and organ morphogenesis (PubMed:19202280). {ECO:0000269|PubMed:19202280}.; FUNCTION: (Microbial infection) Facilitates the development of the powdery mildew fungus E.cruciferarum. {ECO:0000269|PubMed:23888068}.; FUNCTION: (Microbial infection) May prevent cell death upon A.alternata f.sp. lycopersici (AAL) toxin treatment. {ECO:0000269|PubMed:23888068}. 26908,28221,27882,23922 Protein LIFEGUARD 2 (AtLFG2) (Protein BRZ-INSENSITIVE-LONG HYPOCOTYLS 4),Protein LIFEGUARD 3 (AtLFG3),Protein LIFEGUARD 4 (AtLFG4),Bax inhibitor-1 family protein integral component of membrane [GO:0016021]; brassinosteroid mediated signaling pathway [GO:0009742]; defense response to fungus [GO:0050832]; negative regulation of cell death [GO:0060548]; regulation of plant organ morphogenesis [GO:1905421]; unidimensional cell growth [GO:0009826],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, inflorescences and flowers. {ECO:0000269|PubMed:19202280, ECO:0000269|PubMed:23888068}. locus:2077309;,locus:2132318;,locus:2007509; AT3G63310,AT4G02690,AT1G03070 Transmembrane BAX inhibitor motif-containing protein Os03g0745600 protein (cDNA, clone: J075192P11, full insert sequence),Expressed protein (Os03g0795800 protein) (cDNA clone:J033087H03, full insert sequence),Os03g0795800 protein (Fragment) B7F9F6,Q6F387,A0A0P0W545 B7F9F6_ORYSJ,Q6F387_ORYSJ,A0A0P0W545_ORYSJ Os03g0745600 Os03g0745600 OSNPB_030745600,OSJNBb0021G19.10 LOC_Os03g58150 Os03g0795800 OsJ_12944 OSNPB_030795800,Os03g0795800 OSNPB_030795800 ENOG411DVCG TET2 Q9ZUN5 TET2_ARATH Tetraspanin-2 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 30128 Tetraspanin-2 integral component of membrane [GO:0016021] locus:2050354; AT2G19580 Tetraspanin family Os02g0219700 protein (Os02g0219800 protein) (Putative senescence-associated protein) (cDNA, clone: J080092B14, full insert sequence),Os06g0572400 protein (Putative senescence-associated protein) (cDNA clone:J023046E08, full insert sequence) Q6Z6K0,Q5Z619 Q6Z6K0_ORYSJ,Q5Z619_ORYSJ Os02g0219800 Os02g0219700 OSNPB_020219800 P0027A02.29,Os06g0572400 OSJNBa0006A22.18 OSNPB_060572400 P0610D01.26 ENOG411DVCE RAD51C Q8GXF0,F4IW45 RA51C_ARATH,F4IW45_ARATH DNA repair protein RAD51 homolog 3 (DNA repair-recombination protein RAD51C) (AtRAD51C),RAS associated with diabetes protein 51C Male and female sterile. Defects in meiosis beginning in metaphase I. Hypersensitivity to a crosslinking reagent cisplatin and to gamma-irradiation. Somatic homologous recombination is reduced twofold below wild-type frequency.,Homozygotes are sterile. Pollen is not viable and female gametophyte development is blocked after meiosis. Male and female sterile due to defects in meiosis; Sensitive to cisplatin and gamma radiation-S. Toki-2005 FUNCTION: Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. {ECO:0000250}. R-ATH-5693579;R-ATH-5693616;R-ATH-983231; 40215,42992 DNA repair protein RAD51 homolog 3 (DNA repair-recombination protein RAD51C) (AtRAD51C),RAS associated with diabetes protein 51C Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; meiotic DNA recombinase assembly [GO:0000707]; mitotic recombination [GO:0006312]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148],ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; recombinase activity [GO:0000150]; double-strand break repair via homologous recombination [GO:0000724]; double-strand break repair via synthesis-dependent strand annealing [GO:0045003]; female meiotic nuclear division [GO:0007143]; male meiotic nuclear division [GO:0007140]; reciprocal meiotic recombination [GO:0007131]; somatic cell DNA recombination [GO:0016444] TISSUE SPECIFICITY: Detected in various tissues. More expressed in reproductive tissues than in vegetative tissues, with the highest level in young flower buds. {ECO:0000269|PubMed:12139010}. locus:2050852; AT2G45280 DNA repair protein DNA repair protein radA (RadA)-like (Os01g0578000 protein) (cDNA clone:006-202-D10, full insert sequence),Os01g0578000 protein Q9AWX8,A0A0P0V4H5 Q9AWX8_ORYSJ,A0A0P0V4H5_ORYSJ P0013G02.12-1 P0022F12.36-1 Os01g0578000 OSNPB_010578000,Os01g0578000 OSNPB_010578000 ENOG411DVCD Q9T090 Q9T090_ARATH 26S proteasome regulatory particle chain RPT6-like protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Uncharacterized protein At4g27680) ARA:AT4G27680-MONOMER; 44202 26S proteasome regulatory particle chain RPT6-like protein (P-loop containing nucleoside triphosphate hydrolases superfamily protein) (Uncharacterized protein At4g27680) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2137777; AT4G27680 ATPase family AAA domain-containing protein Os06g0714500 protein (Putative spastin protein) (cDNA clone:J013154C19, full insert sequence) Q5Z9Q8 Q5Z9Q8_ORYSJ Os06g0714500 Os06g0714500 OsJ_22651 OSNPB_060714500 P0481E08.4 ENOG411DVCX Q9SAD0 Q9SAD0_ARATH BSD domain-containing protein (T16B5.14 protein) (Uncharacterized protein At1g10720) 48474 BSD domain-containing protein (T16B5.14 protein) (Uncharacterized protein At1g10720) locus:2019993; AT1G10720 BSD domain NA NA NA NA NA NA NA ENOG411DVCS Q6DBP3,Q5XF09 PT505_ARATH,PT311_ARATH Probable sugar phosphate/phosphate translocator At5g05820,Probable sugar phosphate/phosphate translocator At3g11320 33900,33836 Probable sugar phosphate/phosphate translocator At5g05820,Probable sugar phosphate/phosphate translocator At3g11320 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] locus:2166384;,locus:2074713; AT5G05820,AT3G11320 Sugar phosphate phosphate translocator Os03g0286300 protein (Plastidic phosphate translocator-like protein2, putative, expressed) (Putative phosphate/phosphoenolpyruvate translocator protein),Os05g0121900 protein,Os03g0286300 protein (Fragment) Q8GZZ6,Q0DL57,A0A0P0VWA0 Q8GZZ6_ORYSJ,Q0DL57_ORYSJ,A0A0P0VWA0_ORYSJ LOC_Os03g17740 Os03g0286300 OSJNBa0013D02.6 OSNPB_030286300,Os05g0121900 Os05g0121900 OSNPB_050121900,Os03g0286300 OSNPB_030286300 ENOG411DVCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B_lectin NA NA NA NA NA NA NA ENOG411DVCU MHF15.4,F26K24.1 Q8RWI8,F4K3U5,Q9SF25,F4J7F3,A0A1P8BGX8,F4K3U8,A0A1I9LNR0,F4K3U7 Q8RWI8_ARATH,F4K3U5_ARATH,Q9SF25_ARATH,F4J7F3_ARATH,A0A1P8BGX8_ARATH,F4K3U8_ARATH,A0A1I9LNR0_ARATH,F4K3U7_ARATH Polyketide cyclase/dehydrase/lipid transport superfamily protein (Uncharacterized protein At5g06440),Polyketide cyclase/dehydrase/lipid transport superfamily protein,At3g11720 (F26K24.1 protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At3g11720),Polyketide cyclase/dehydrase and lipid transport superfamily protein 46509,55092,61481,67371,44681,35324,50753,55945 Polyketide cyclase/dehydrase/lipid transport superfamily protein (Uncharacterized protein At5g06440),Polyketide cyclase/dehydrase/lipid transport superfamily protein,At3g11720 (F26K24.1 protein) (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Uncharacterized protein At3g11720),Polyketide cyclase/dehydrase and lipid transport superfamily protein plasma membrane [GO:0005886],mitochondrion [GO:0005739] locus:2081456;,locus:2164240; AT5G06440,AT3G11720 NA Expressed protein (Os11g0568700 protein) (cDNA clone:J013068G16, full insert sequence),Expressed protein (Os11g0568700 protein) (cDNA clone:J023119C16, full insert sequence) Q2R2E6,B7F733 Q2R2E6_ORYSJ,B7F733_ORYSJ LOC_Os11g36070 Os11g0568700 OSNPB_110568700,Os11g0568700 LOC_Os11g36070 OSNPB_110568700 ENOG411DVCT Q9LJA1 Q9LJA1_ARATH Expressed protein (Ribosomal L18p/L5e family protein) 35725 Expressed protein (Ribosomal L18p/L5e family protein) ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2077016; AT3G22450 Ribosomal L18p/L5e family Expressed protein (Os10g0484400 protein) (cDNA clone:002-124-B09, full insert sequence) Q337J7 Q337J7_ORYSJ LOC_Os10g34320 Os10g0484400 OsJ_31935 OSNPB_100484400 ENOG411DVC9 BAH1,NLA Q9SRX9,A0A1P8AR01 BAH1_ARATH,A0A1P8AR01_ARATH E3 ubiquitin-protein ligase BAH1 (EC 2.3.2.27) (Protein BENZOIC ACID HYPERSENSITIVE 1) (Protein NITROGEN LIMITATION ADAPTATION) (RING-type E3 ubiquitin transferase BAH1),SPX (SYG1/Pho81/XPR1) domain-containing protein DISRUPTION PHENOTYPE: Plants show a low-nitrogen-induced early senescence phenotype and an excessive accumulation of salicylic acid after pathogen infection or application of benzoic acid. {ECO:0000269|PubMed:18753285}. Exhibits spontaneous cell death in leaves after bolting and increased salicylic acid levels and localized cell death after inoculation with Pst DC3000.,In contrast to wild type anthocyanin accumulation did not occur in the senescing mutant rosette leaves.,Mutants failed to adapt to the conditions of nitrogen limitation and started senescence much earlier and more rapidly than did wild-type plants supplied with 3 mM nitrate: mutant plants supplied with 10 mM nitrate had a similar pattern of growth and development to wild type. When the nitrate concentration was reduced to 3 mM the mutant plants started senescence in the fifth rosette leaf at 24 DAG and after this point senescence progressed rapidly with all rosette leaves showing senescence symptoms at 26 DAG and the whole rosette dying at 32 DAG. In contrast wild-type plants displayed no senescence symptoms in the fifth rosette leaf until 32 DAG. In wild-type plants the process of senescence proceeded slowly and gradually from the fifth to the youngest rosette leaves and it took at least 2 weeks for all rosette leaves to show the senescence symptoms.,The cauline leaves in the mutant plants started senescence at 28 DAG at least 10 days earlier than those in the wild-type plants. Further the developing mutant siliques initiated senescence in their tips at 32 DAG while the wild-type siliques showed no senescence symptoms throughout their development but accumulated abundant anthocyanin which was not observed in the mutant siliques.,The early senescence process was arrested when nitrate was added after depletion.,The occurrence (at 24 DAG) and progression (at 28 DAG) of senescence in mutant rosette leaves were not accompanied by a significant reduction in the amounts of nitrogen-containing compounds: nitrate total amino acids soluble proteins and total nitrogen. By contrast they were largely reduced in the wild-type plants.,With the reduction of the nitrate concentration to 1 mM the occurrence of the senescence phenotype in the rosette leaves of mutant plants was accelerated to 20 DAG and severe senescence in the developing mutant siliques resulted in their death around 30 DAG without producing viable seeds. Under the same growth condition (1 mM nitrate) wild-type plants did not start senescence in their rosette leaves until 26 DAG and produced fecund siliques. Early senescence under limited nitrogen-S. Rothstein-2007 FUNCTION: Mediates E2-dependent protein ubiquitination. Plays a role in salicylic acid-mediated negative feedback regulation of salicylic acid (SA) accumulation. May be involved in the overall regulation of SA, benzoic acid and phenylpropanoid biosynthesis. Controls the adaptability to nitrogen limitation by channeling the phenylpropanoid metabolic flux to the induced anthocyanin synthesis. {ECO:0000269|PubMed:17355433, ECO:0000269|PubMed:18552353, ECO:0000269|PubMed:18753285}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 38409,28018 E3 ubiquitin-protein ligase BAH1 (EC 2.3.2.27) (Protein BENZOIC ACID HYPERSENSITIVE 1) (Protein NITROGEN LIMITATION ADAPTATION) (RING-type E3 ubiquitin transferase BAH1),SPX (SYG1/Pho81/XPR1) domain-containing protein nuclear speck [GO:0016607]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of salicylic acid metabolic process [GO:0010337]; response to benzoic acid [GO:0080021]; response to nitrate [GO:0010167]; response to salicylic acid [GO:0009751]; salicylic acid biosynthetic process [GO:0009697]; systemic acquired resistance [GO:0009627] TISSUE SPECIFICITY: High expression in roots and stems, medium in seedlings, flowers, rosette and cauline leaves, and very low in siliques. Detected in cotyledons, hypocotyls, pedicel, receptacle, pistil, sepal, filament of stamen and at the two ends of developing siliques. {ECO:0000269|PubMed:17355433}. locus:2024675; AT1G02860 E3 ubiquitin-protein ligase BAH1-like Probable E3 ubiquitin-protein ligase BAH1-like 2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BAH1-like 2) Q7XI73 BAHL2_ORYSJ Os07g0673200 LOC_Os07g47590 OsJ_25542 P0470D12.139 ENOG411DVC2 Q8RWG0,C0SVE6,A0A1I9LNX5,F4IHN9,F4IQY0 Q8RWG0_ARATH,C0SVE6_ARATH,A0A1I9LNX5_ARATH,F4IHN9_ARATH,F4IQY0_ARATH Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein (At2g36720) (Putative PHD-type zinc finger protein),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein (Uncharacterized protein At3g53680) (Fragment),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 110905,93277,93467,118067,91370 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein (At2g36720) (Putative PHD-type zinc finger protein),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein (Uncharacterized protein At3g53680) (Fragment),Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein metal ion binding [GO:0046872]; transferase activity, transferring acyl groups [GO:0016746] locus:2040550;,locus:2084111;,locus:2057815;,locus:2040651; AT2G36720,AT2G27980,AT2G37520 PHD Os06g0101000 protein (PHD zinc finger protein-like),Os06g0731100 protein Q5VMF2,A0A0P0X1A3 Q5VMF2_ORYSJ,A0A0P0X1A3_ORYSJ B1460A05.22 Os06g0101000 OSNPB_060101000,Os06g0731100 OSNPB_060731100 ENOG411DVC1 ELD1 Q9C9Z9 ELD1_ARATH Glycosyltransferase-like KOBITO 1 (EC 2.4.1.-) (Protein ABA INSENSITIVE 8) (Protein ELONGATION DEFECTIVE 1) DISRUPTION PHENOTYPE: Increased plasmodesmatal permeability leading to an increase in intercellular protein trafficking (PubMed:22457425). Growth-defective due to cellulose deficiency, impaired cell elongation and altered cell division in root meristems, thus leading to stunted plants (PubMed:15010620, PubMed:10859181, PubMed:12215501). When light-grown, dwarf, with very short root and lateral organs (e.g. leaves) extremely reduced in size, as well as abnormal vascular tissues, characterized by twisted vascular bundle and the presence of undifferentiated vascular cells (PubMed:15010620, PubMed:24995569). Accumulation of ectopic lignin, especially in the mature part of the root, of ectopic callose accumulation in hypocotyls, and of ectopic suberin around the vascular bundles in roots and hypocotyls (PubMed:15010620, PubMed:10859181, PubMed:12215501). Photomorphogenesis in the dark, absence of etiolated phenotype, with extremely short hypocotyls, shoot development, and inflorescences and flowers production (PubMed:15010620, PubMed:24995569). Inability to grow in soil (PubMed:15010620, PubMed:14742875). The cell wall is constituted by abnormally randomized microfibrils occluded by a layer of pectins probably due to a defect in the synthesis of crystalline cellulose during the elongation phase of the cell (PubMed:15010620, PubMed:24995569). Abscisic acid- (ABA-) resistant germination associated with defective stomatal regulation, altered ABA-responsive gene expression, delayed flowering, and male sterility (PubMed:14742875). Glucose- (Glc-) dependent growth with impaired Glc sensitivity that normaly induces seedling developmental arrest; Glc reverses partially disruption phenotypes (PubMed:14742875). {ECO:0000269|PubMed:10859181, ECO:0000269|PubMed:12215501, ECO:0000269|PubMed:14742875, ECO:0000269|PubMed:15010620, ECO:0000269|PubMed:22457425, ECO:0000269|PubMed:24995569}. Dwarf; Cellulose deficient-H. Hofte-2002 FUNCTION: Involved in the coordination between cell elongation and cellulose synthesis by promoting the expression of genes involved in cell elongation and cellulose synthesis (PubMed:15010620, PubMed:10859181, PubMed:12215501, PubMed:24995569). Acts as a regulator of plasmodesmatal permeability (PubMed:22457425). Mediates abscisic acid (ABA) and sugar responses essential for growth (e.g. seed germination, stomatal regulation and ABA-regulated gene expression) (PubMed:14742875). Required for normal organogenesis by promoting cell elongation, regulating cell differentiation in vascular tissues and maintaining root meristem identity (PubMed:15010620, PubMed:10859181). Regulates crystalline cellulose microfibrils deposition and parallel organization during the elongation phase of the cell (PubMed:12215501). Maybe a glycosyltransferase (PubMed:22457425). Negative factor in light inhibition of hypocotyl elongation through modulating cellulose biosynthesis (PubMed:24995569). {ECO:0000269|PubMed:10859181, ECO:0000269|PubMed:12215501, ECO:0000269|PubMed:14742875, ECO:0000269|PubMed:15010620, ECO:0000269|PubMed:22457425, ECO:0000269|PubMed:24995569}. MISCELLANEOUS: 'Kobito' means 'dwarf' in Japanese. {ECO:0000303|PubMed:12215501}. 2.4.1.- 59889 Glycosyltransferase-like KOBITO 1 (EC 2.4.1.-) (Protein ABA INSENSITIVE 8) (Protein ELONGATION DEFECTIVE 1) cytoplasm [GO:0005737]; endosome [GO:0005768]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757]; abscisic acid-activated signaling pathway [GO:0009738]; cell cycle [GO:0007049]; cell differentiation [GO:0030154]; cell division [GO:0051301]; cellular response to light stimulus [GO:0071482]; cellulose biosynthetic process [GO:0030244]; cellulose microfibril organization [GO:0010215]; developmental growth involved in morphogenesis [GO:0060560]; maintenance of root meristem identity [GO:0010078]; plant-type cell wall modification involved in multidimensional cell growth [GO:0009831]; plasmodesma organization [GO:0009663]; regulation of growth [GO:0040008]; regulation of plant-type cell wall cellulose biosynthetic process [GO:2001009]; response to abscisic acid [GO:0009737]; response to glucose [GO:0009749]; response to light stimulus [GO:0009416]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed at low levels in both light- and dark-grown plants (PubMed:15010620, PubMed:12215501, PubMed:14742875). Accumulates especially in the elongation zone of roots (at protein level) (PubMed:14742875). Expressed in the roots regardless of the light treatment, high levels in the uppermost regions of hypocotyls in darkness, but low levels in light-grown hypocotyls (PubMed:24995569). {ECO:0000269|PubMed:12215501, ECO:0000269|PubMed:14742875, ECO:0000269|PubMed:15010620, ECO:0000269|PubMed:24995569}. locus:2077858; AT3G08550 NA Os01g0232800 protein (Fragment) A0A0N7KCM0 A0A0N7KCM0_ORYSJ Os01g0232800 OSNPB_010232800 ENOG411DVC7 LECRK82,LECRK81,LECRKS7 Q9LYX1,Q9LFH9,Q9FHG4 LRK82_ARATH,LRK81_ARATH,LRKS7_ARATH L-type lectin-domain containing receptor kinase VIII.2 (LecRK-VIII.2) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase VIII.1 (LecRK-VIII.1) (EC 2.7.11.1),Probable L-type lectin-domain containing receptor kinase S.7 (LecRK-S.7) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the oomycetes Phytophthora brassicae and Phytophthora capsici. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:25083911}. 2.7.11.1 77120,77672,75842 L-type lectin-domain containing receptor kinase VIII.2 (LecRK-VIII.2) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase VIII.1 (LecRK-VIII.1) (EC 2.7.11.1),Probable L-type lectin-domain containing receptor kinase S.7 (LecRK-S.7) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to oomycetes [GO:0002229],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674] locus:2143528;,locus:2083986;,locus:2162212; AT5G03140,AT3G53380,AT5G55830 L-type lectin-domain containing receptor kinase Os06g0285400 protein (Putative lectin-like receptor kinase),Os05g0125200 protein (Putative receptor like protein kinase LRK1),Os06g0285400 protein (Fragment) Q5VNF2,Q6L4L2,A0A0P0WVA9 Q5VNF2_ORYSJ,Q6L4L2_ORYSJ,A0A0P0WVA9_ORYSJ Os06g0285400 OSNPB_060285400 P0491D10.34,Os05g0125200 Os05g0125200 OSJNBb0079L11.5 OSNPB_050125200,Os06g0285400 OSNPB_060285400 ENOG411DVC6 Q0WVW4 Q0WVW4_ARATH RNA-binding KH domain-containing protein (Uncharacterized protein At3g32940) 66480 RNA-binding KH domain-containing protein (Uncharacterized protein At3g32940) RNA binding [GO:0003723] locus:2096648; AT3G32940 KH Os08g0100700 protein A0A0P0XAL4 A0A0P0XAL4_ORYSJ Os08g0100700 OSNPB_080100700 ENOG411DVC5 KIP,SAB Q6IMT0,Q6IMT1,F4I9T6 KIP_ARATH,SAB_ARATH,F4I9T6_ARATH Protein KINKY POLLEN,Protein SABRE (Protein HYPERSENSITIVE TO PI STARVATION 4),HYPERSENSITIVE TO PI STARVATION 4 DISRUPTION PHENOTYPE: Kinky-shaped pollen tubes due to periodic growth arrests alternated with phases of tube axis reorientation of pollen tube tip, as well as shorter and thicker root hairs. Lack of callose plugs in pollen tubes. Reduced seed set. {ECO:0000269|PubMed:14675453}.,DISRUPTION PHENOTYPE: Dwarf plants; smaller aerial organs and wider roots because of abnormal diffuse cell growth. Abnormal cell expansion that is greatest in the root cortex cell layer and is independent of the root growth rate, and that leads to a shift in the orientation of expansion (PubMed:7867930, PubMed:8275864). Sterility due to female organ anomalies (PubMed:8275864, PubMed:14675453). Enhanced responses to Pi starvation (PubMed:22615140). {ECO:0000269|PubMed:14675453, ECO:0000269|PubMed:22615140, ECO:0000269|PubMed:7867930, ECO:0000269|PubMed:8275864}. Pollen tube growth was altered. Pollen tubes were shorter often having branched appearance and peculiar kinky shape. Also callose plugs were rare or absent in mutant pollen tubes compared to the wild type. Despite morphological aberrations twisted pollen tube appeared to have same ultrastructural features as the wild type pollen tubes. Migration of the male germ unit to the pollen tube occurred at approximately the same time in mutants and in the wild type. Homozygous progeny showed shorter and thicker root hairs. No other significant visible phenotype changes were observed.,Pollen tube growth was altered. Pollen tubes were shorter often having branched appearance and peculiar kinky shape. Also callose plugs were rare or absent in mutant pollen tubes compared to the wild type. Despite morphological aberrations twisted pollen tube appeared to have same ultrastructural features as the wild type pollen tubes. Migration of the male germ unit to the pollen tube occurred at approximately the same time in mutants and in the wild type. Homozygous progeny showed shorter and thicker root hairs. Seed set and the silique size were reduced in kip-2 mutants. No other significant visible phenotype changes were observed.,Adult mutant plants were three to four times smaller than single mutant sab plants. Roots of double mutant were shorter than roots of sab mutant. Radial organization of the root was similar to the roots of sab mutant. Root hairs were thicker that in wild type or sab mutant. Pollen grains from double mutant plants rarely germinated in vitro and when they did the pollen tubes were shorter and twisted.,Mutation causes abnormal cell expansion of the root cortical cell. A shift in the orientation of expansion from longitudinal to radial direction was observed in the roots by confocal microscopy. Mutation was partially rescued by adding ethylene biosynthesis inhibitors. Arial part of the mutant plants had visible leaf phenotype with short wide leaves (including cotyledons) and shorter and wider petioles when compared to wild type. Twisted, branched pollen tubes; Homozygotes are viable: Reduced fertility; Short, thick root hairs-S. Bonhomme-2003,Short, thick roots-P. Benfey-1995 FUNCTION: May be involved in membrane trafficking (By similarity). Required for tip growth in pollen tubes and root hairs. {ECO:0000250|UniProtKB:K7VLR4, ECO:0000269|PubMed:14675453}.,FUNCTION: May be involved in membrane trafficking (By similarity). Required for cell expansion, especially in root cortex, probably by counteracting the action of ethylene in promoting cells radial expansion (PubMed:7867930, PubMed:8275864). Involved in female organ development (PubMed:14675453). Antagonistically interacts with ethylene signaling to regulate plant responses to Pi starvation (PubMed:22615140). {ECO:0000250|UniProtKB:K7VLR4, ECO:0000269|PubMed:14675453, ECO:0000269|PubMed:22615140, ECO:0000269|PubMed:7867930, ECO:0000269|PubMed:8275864}. MISCELLANEOUS: The sequence shown here is derived from an EMBL/GenBank/DDBJ third party annotation (TPA) entry. 290411,292913,299597 Protein KINKY POLLEN,Protein SABRE (Protein HYPERSENSITIVE TO PI STARVATION 4),HYPERSENSITIVE TO PI STARVATION 4 extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; pollen tube tip [GO:0090404]; root hair tip [GO:0035619]; pollen tube growth [GO:0009860]; root hair cell tip growth [GO:0048768],extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; cellular response to phosphate starvation [GO:0016036]; multicellular organism development [GO:0007275]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; positive regulation of cell growth [GO:0030307],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cell growth [GO:0016049]; response to ethylene [GO:0009723] DEVELOPMENTAL STAGE: In seedlings, expressed in hypocotyl and in the entire cotyledon. Observed in all types of cells in the root apex, but restricted to vascular tissue in the upper part of the root. Stronger expression in young leaves than in old leaves. Accumulates in all flower organs, including the sepal, petal, stamen, and gynoecium. In the silique, high levels at both ends but weak in the middle. {ECO:0000269|PubMed:22615140}. TISSUE SPECIFICITY: Mostly expressed in pollen and roots, especially in tip-growing cells, but also present in seedlings, stems, leaves, buds, flowers, siliques and seeds. {ECO:0000269|PubMed:14675453}.,TISSUE SPECIFICITY: Highest levels in leaves, also expressed in leaves, flowers, and siliques, and, to a lower extent, in roots and stems. {ECO:0000269|PubMed:22615140}. locus:2157052;,locus:2015277; AT5G49680,AT1G58250 RNA pol II promoter Fmp27 protein domain Os03g0353701 protein (Fragment),Os03g0353600 protein (Fragment) A0A0P0VYE2,A0A0P0VYE3 A0A0P0VYE2_ORYSJ,A0A0P0VYE3_ORYSJ Os03g0353701 OSNPB_030353701,Os03g0353600 OSNPB_030353600 ENOG411DVC4 MNF13.22 Q94BY8 Q94BY8_ARATH AT5g40660/MNF13_180 (ATP12 protein-like protein) 36310 AT5g40660/MNF13_180 (ATP12 protein-like protein) mitochondrion [GO:0005739]; proton-transporting ATP synthase complex assembly [GO:0043461] locus:2168833; AT5G40660 ATP synthase mitochondrial F1 complex assembly factor Os07g0644000 protein (Putative ATP synthase mitochondrial F1 complex assembly factor2),Os12g0606400 protein Q7F1Y6,Q2QMF5 Q7F1Y6_ORYSJ,Q2QMF5_ORYSJ OJ1003_C06.132 Os07g0644000 OSNPB_070644000,Os12g0606400 LOC_Os12g41320 OsJ_36800 OSNPB_120606400 ENOG411E6N9 T8M16_210 Q9LES0 Q9LES0_ARATH Uncharacterized protein At3g56880 (Uncharacterized protein T8M16_210) (VQ motif-containing protein) 25963 Uncharacterized protein At3g56880 (Uncharacterized protein T8M16_210) (VQ motif-containing protein) locus:2103590; AT3G56880 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411E6NS bZIP75,bZIP70 F4K9L7,F4K0H9 F4K9L7_ARATH,F4K0H9_ARATH Basic leucine-zipper 75,Basic leucine-zipper 70 16537,23915 Basic leucine-zipper 75,Basic leucine-zipper 70 transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:1005716856;,locus:2159325; AT5G08141,AT5G60830 Transcription factor NA NA NA NA NA NA NA ENOG411E6NQ ATHB-52 Q9FN29 ATB52_ARATH Homeobox-leucine zipper protein ATHB-52 (HD-ZIP protein ATHB-52) (Homeodomain transcription factor ATHB-52) FUNCTION: Probable transcription factor. {ECO:0000250}. 17934 Homeobox-leucine zipper protein ATHB-52 (HD-ZIP protein ATHB-52) (Homeodomain transcription factor ATHB-52) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to absence of light [GO:0009646]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:16055682}. locus:2154724; AT5G53980 homeobox-leucine zipper protein NA NA NA NA NA NA NA ENOG411E6NZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GLutaRedoXin NA NA NA NA NA NA NA ENOG411E6NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os11g0113300 protein) (cDNA clone:J033020F07, full insert sequence),Os12g0112800 protein Q2RBF4,A0A0P0Y695 Q2RBF4_ORYSJ,A0A0P0Y695_ORYSJ LOC_Os11g02200 Os11g0113300 OsJ_32701 OSNPB_110113300,Os12g0112800 OSNPB_120112800 ENOG411E6NB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0220500 protein A0A0P0WJB1 A0A0P0WJB1_ORYSJ Os05g0220500 OSNPB_050220500 ENOG411E6NE FLC Q9S7Q7,Q58T15,Q58T14,A5JM49 FLC_ARATH,Q58T15_ARATH,Q58T14_ARATH,A5JM49_ARATH MADS-box protein FLOWERING LOCUS C (MADS-box protein FLOWERING LOCUS F),Flowering locus C protein (K-box region and MADS-box transcription factor family protein),Flowering locus C beta splice variant (K-box region and MADS-box transcription factor family protein) After 12 wk vernalization FLC levels increased after 30 d growth post-cold.,After 6 wk of cold FLC levels were lower than those observed at 4 wk.,After 6 wk vernalization Lov-1 flowered earlier than Ull-2-5 suggesting that Lov-1 might be insensitive to short periods of cold but then respond quickly after that.,FLC levels decreased during cold treatment but then increased significantly after the plants were returned to 23°C.,While FLC decreased in Lov-1 plants over a 4-wk cold period flowering time was not accelerated.,Accelerated flowering by 2 weeks vernalization. Flowering time variation between accessions was maximal after 4 wk vernalization.,FLC levels return to a moderately high level after 4 wk vernalization.,Despite responding to 4 wk of cold Var-2-6 and Ull-2-5 still flowered late after >6 wk of cold; i.e. the vernalization response was relatively slow.,After 4 wk vernalization FLC levels had increased (by 30 d after transfer to 23°C) to the same level as nonvernalized plants.,Flowered extremely late after 8 wk vernalization and required at least 14 wk of cold to fully saturate the vernalization requirement.,Plants did flower after 4 wk vernalization but considerably later than H51.,After 4 wk vernalization the repression of FLC expression was maintained.,increased FLC mRNA late flowering,reduced FLC mRNA early flowering,The double mutant responded less to vernalization than either single mutant.,Extreme acceleration of flowering time.,No additive effect on flowering time.,Early flowering.,Wild-type phenotype restored.,Late flowering in both long- and short-day growth conditions but retain a normal response to photoperiod compared to wild type.,Late flowering. Flowers later than flc3 single mutant but earlier than ldl1/ldl2 double mutant.,Flowering time similar to that of the flc-3 single mutant in both LD and SD conditions. Early flowering-R. Amasino-1999 FUNCTION: Putative transcription factor that seems to play a central role in the regulation of flowering time in the late-flowering phenotype by interacting with 'FRIGIDA', the autonomous and the vernalization flowering pathways. Inhibits flowering by repressing 'SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1'. {ECO:0000269|PubMed:10716723, ECO:0000269|PubMed:11283346, ECO:0000269|PubMed:19121105}. MISCELLANEOUS: Prevention of early flowering by expression of FLC requires methylation of 'Lys-36' of histone H3. Repression of FLC is dependent on histone H3 'Lys-4' methylation which is partly controlled by the lysine-specific demthylase 1 (LSD1) homologs, LDL1, LDL2 and FLD. May also be regulated by the level of histone acetylation. 21865,18754,20236,21009 MADS-box protein FLOWERING LOCUS C (MADS-box protein FLOWERING LOCUS F),Flowering locus C protein (K-box region and MADS-box transcription factor family protein),Flowering locus C beta splice variant (K-box region and MADS-box transcription factor family protein) nucleus [GO:0005634]; protein complex [GO:0043234]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of circadian rhythm [GO:0042752]; response to temperature stimulus [GO:0009266]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Found in shoots of non-flowering plants grown under long-day conditions at days 4 to 15, and in shoots of plants grown under short-day conditions at days 4 to 11 after germination. Expressed in embryos from the early globular stage. FLC is not imprinted and both parental alleles contribute equally to expression in embryos. Expression is repressed during gametogenesis, and is then reactivated after fertilization in embryos. {ECO:0000269|PubMed:19121105}. TISSUE SPECIFICITY: High expression in the vegetative apex and in root tissue and lower expression in leaves and stems. Not detected in young tissues of the inflorescence. Before fertilization, expressed in ovules, but not in pollen or stamens, of non-vernalized plants. After vernalization, not detected in ovules. {ECO:0000269|PubMed:19121105}. locus:2184118; AT5G10140 flowering locus C NA NA NA NA NA NA NA ENOG411EGR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6A2 Q6NQG3 Q6NQG3_ARATH At1g16790 (Ribosomal protein-like protein) (Uncharacterized protein At1g16790) 15455 At1g16790 (Ribosomal protein-like protein) (Uncharacterized protein At1g16790) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536]; ribosome [GO:0005840] locus:2015611; AT1G16790 NA NA NA NA NA NA NA NA ENOG411E6A1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0121400 protein,Os06g0121700 protein Q5VQ88,Q5VQ84 Q5VQ88_ORYSJ,Q5VQ84_ORYSJ Os06g0121400 OsJ_19936 OSNPB_060121400 P0660D08.33,P0660D08.37 Os06g0121700 OSNPB_060121700 ENOG411E6A6 Q1G383,F4JQ58,B3H489 Q1G383_ARATH,F4JQ58_ARATH,B3H489_ARATH RING/U-box superfamily protein 13946,17892,20367 RING/U-box superfamily protein integral component of membrane [GO:0016021] locus:4515103444; AT4G24204 RING Os06g0252500 protein A0A0P0WV99 A0A0P0WV99_ORYSJ Os06g0252500 OSNPB_060252500 ENOG411E6A4 Q9M8Y6 Q9M8Y6_ARATH At3g04300 (RmlC-like cupins superfamily protein) (T6K12.8 protein) (Uncharacterized protein At3g04300) 10847 At3g04300 (RmlC-like cupins superfamily protein) (T6K12.8 protein) (Uncharacterized protein At3g04300) locus:2103095; AT3G04300 Has 364 Blast hits to 364 proteins in 91 species Archae - 0 NA NA NA NA NA NA NA ENOG411E6A5 Q9M160 Y4095_ARATH Uncharacterized protein At4g00950 32168 Uncharacterized protein At4g00950 transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355] locus:2134573; AT4G00950 NA NA NA NA NA NA NA NA ENOG411E6A9 ORRM6 Q9FX45 ORRM6_ARATH Organelle RRM domain-containing protein 6, chloroplastic DISRUPTION PHENOTYPE: Dwarf plants and pale green leaf phenotype. {ECO:0000269|PubMed:28213559}. FUNCTION: Involved in C-to-U editing of chloroplastic RNA. Required for the photosynthetic subunit psbF transcript editing in chloroplast. {ECO:0000269|PubMed:28213559}. 20063 Organelle RRM domain-containing protein 6, chloroplastic chloroplast [GO:0009507]; RNA binding [GO:0003723]; mRNA processing [GO:0006397] locus:2206850; AT1G73530 RNA recognition motif-containing protein NA NA NA NA NA NA NA ENOG411E6AR Q9XIL1 Q9XIL1_ARATH At2g15780/F19G14.22 (Cupredoxin superfamily protein) (Expressed protein) 27400 At2g15780/F19G14.22 (Cupredoxin superfamily protein) (Expressed protein) electron carrier activity [GO:0009055] locus:2044611; AT2G15780 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E6AS MFB13.5 Q9FLK5,A0A1P8BA00,A0A1P8BA14 Q9FLK5_ARATH,A0A1P8BA00_ARATH,A0A1P8BA14_ARATH Gb|AAD39278.1 (Remorin family protein),Remorin family protein 30791,28040,23758 Gb|AAD39278.1 (Remorin family protein),Remorin family protein locus:2163178; AT5G61280 Remorin C-terminal region NA NA NA NA NA NA NA ENOG411E6AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine proteinase inhibitor Q10R37,A0A0P0VTN6 Q10R37_ORYSJ,A0A0P0VTN6_ORYSJ LOC_Os03g07650 Os03g0172700 OSNPB_030172700,Os03g0172850 OSNPB_030172850 ENOG411E6AQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0740200 protein Q7Y1F7 Q7Y1F7_ORYSJ OSJNBa0057G07.7 OJ1365_D05.26 LOC_Os03g52940 Os03g0740200 OSNPB_030740200 ENOG411E6AV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411E6AW ERF4 O80340 ERF78_ARATH Ethylene-responsive transcription factor 4 (AtERF4) (Ethylene-responsive element-binding factor 4) (EREBP-4) (Protein RELATED TO APETALA2 5) FUNCTION: Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. 23741 Ethylene-responsive transcription factor 4 (AtERF4) (Ethylene-responsive element-binding factor 4) (EREBP-4) (Protein RELATED TO APETALA2 5) nuclear body [GO:0016604]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; negative regulation of transcription, DNA-templated [GO:0045892]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to ethylene [GO:0009723]; transcription, DNA-templated [GO:0006351] locus:2087065; AT3G15210 transcription factor NA NA NA NA NA NA NA ENOG411E6AT Q9SR97 YIPL1_ARATH Protein yippee-like At3g08990 R-ATH-6798695; 14607 Protein yippee-like At3g08990 metal ion binding [GO:0046872] locus:2095269; AT3G08990 yippee-like NA NA NA NA NA NA NA ENOG411E6AU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6AZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os05g0437100 protein (Os05g0437133 protein),Os05g0437050 protein C7J231,A0A0P0WMT1 C7J231_ORYSJ,A0A0P0WMT1_ORYSJ Os05g0437100 Os05g0437133 OSNPB_050437100,Os05g0437050 OSNPB_050437050 ENOG411E6AX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6AY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: 60s ribosomal protein Os01g0242900 protein (cDNA clone:J023102N05, full insert sequence) Q5NA71 Q5NA71_ORYSJ B1066G12.20-1 Os01g0242900 OsJ_01071 OSNPB_010242900 ENOG411E6AB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0481200 protein Q9AV54 Q9AV54_ORYSJ LOC_Os10g34010 Os10g0481200 OSJNBa0093B11.16 OSNPB_100481200 ENOG411E6AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6AA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: glutamine dumper NA NA NA NA NA NA NA ENOG411E6AF A0JPX2,F4JZA9 A0JPX2_ARATH,F4JZA9_ARATH At5g05360,Uncharacterized protein 16899,17998 At5g05360,Uncharacterized protein locus:2153559; AT5G05360 expressed protein Expressed protein (Os03g0298600 protein) (cDNA clone:J013088A03, full insert sequence),Os05g0342900 protein (cDNA clone:002-104-A02, full insert sequence) Q10MR3,Q5W6N1 Q10MR3_ORYSJ,Q5W6N1_ORYSJ Os03g0298600 LOC_Os03g18700 Os03g0298600 OSNPB_030298600,Os05g0342900 Os05g0342900 OJ1314_A05.11 OSNPB_050342900 P0015F11.6 ENOG411E6AG MTI20.11 Q8L8S0,B3H5I5 Q8L8S0_ARATH,B3H5I5_ARATH At5g57860 (Ubiquitin-like protein) (Ubiquitin-like superfamily protein) (Uncharacterized protein At5g57860),Ubiquitin-like superfamily protein Pathways in cancer (05200),Ubiquitin mediated proteolysis (04120),HIF-1 signaling pathway (04066),Renal cell carcinoma (05211) 10899,7802 At5g57860 (Ubiquitin-like protein) (Ubiquitin-like superfamily protein) (Uncharacterized protein At5g57860),Ubiquitin-like superfamily protein locus:2174443; AT5G57860 UBQ Os03g0364000 protein (Ubiquitin, putative, expressed) (cDNA clone:001-104-D11, full insert sequence) Q10KZ8 Q10KZ8_ORYSJ Os03g0364000 LOC_Os03g24920 OsJ_10951 OSNPB_030364000 ENOG411E6AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Protease inhibitor seed storage LTP family protein precursor Cortical cell delineating protein, putative, expressed (Os10g0349300 protein) (Putative lipid transfer protein),Os10g0178000 protein (Protease inhibitor/seed storage/LTP family protein) (Putative lipid transfer protein),Os10g0349600 protein,Os03g0103200 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (cDNA clone:001-105-E10, full insert sequence),Cortical cell delineating protein, putative, expressed (Os10g0551900 protein) (Putative lipid transfer protein),Cortical cell delineating protein, putative (Os10g0349400 protein) (Putative lipid tranfer protein),Cortical cell delineating protein, putative (Os10g0552200 protein) (Putative lipid transfer protein),Cortical cell delineating protein, putative, expressed (Os10g0349900 protein) (Putative lipid tranfer protein),Os10g0551800 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (Putative lipid transfer protein),Cortical cell delineating protein, putative, expressed (LTP1) (Lipid transfer protein) (Lipid transfer protein-like protein) (Os03g0103100 protein) (cDNA clone:J033133L09, full insert sequence),Os10g0349800 protein (Putative lipid tranfer protein) Q8LM52,Q8LNB8,Q8LM49,Q10T26,Q9FWP0,Q8LM51,Q9FWP3,Q8LM47,Q7XCD3,Q6S509,Q8LM48 Q8LM52_ORYSJ,Q8LNB8_ORYSJ,Q8LM49_ORYSJ,Q10T26_ORYSJ,Q9FWP0_ORYSJ,Q8LM51_ORYSJ,Q9FWP3_ORYSJ,Q8LM47_ORYSJ,Q7XCD3_ORYSJ,Q6S509_ORYSJ,Q8LM48_ORYSJ Os10g0349300 LOC_Os10g20830 Os10g0349300 OsJ_31185 OSJNAb0078C13.10 OSNPB_100349300,Os10g0178000 LOC_Os10g09920 OsJ_30880 OSJNBa0047G15.9 OSNPB_100178000,Os10g0349600 LOC_Os10g20860 OsJ_31188 OSJNAb0078C13.13 OSNPB_100349600,LOC_Os03g01310 Os03g0103200 OSNPB_030103200,OSJNBa0015J15.15 LOC_Os10g40440 Os10g0551900 OSNPB_100551900,Os10g0349400 LOC_Os10g20840 OsJ_31186 OSJNAb0078C13.11 OSNPB_100349400,OSJNBa0015J15.12 LOC_Os10g40470 Os10g0552200 OsJ_32397 OSNPB_100552200,LOC_Os10g20890 Os10g0349900 OsJ_31190 OSJNAb0078C13.15 OSNPB_100349900,OSJNBa0015J15.16 LOC_Os10g40430 Os10g0551800 OSNPB_100551800,LTP1 ltp2 LOC_Os03g01300 Os03g0103100 OsJ_19339 OSNPB_030103100,Os10g0349800 OsJ_31189 OSJNAb0078C13.14 OSNPB_100349800 ENOG411E6AE Q8VZT9 Q8VZT9_ARATH Transmembrane protein (Uncharacterized protein At4g00585) 9858 Transmembrane protein (Uncharacterized protein At4g00585) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; respiratory chain complex I [GO:0045271]; photorespiration [GO:0009853] locus:505006419; AT4G00585 NA Os09g0560300 protein (cDNA clone:001-104-E03, full insert sequence) (cDNA clone:J033076P14, full insert sequence) Q653E2 Q653E2_ORYSJ Os09g0560300 Os09g0560300 OJ1065_E04.25 OsJ_30330 OSNPB_090560300 P0635G10.2 ENOG411E6AK Q8LCF2,F4JNQ9 Q8LCF2_ARATH,F4JNQ9_ARATH At4g29735 (Transmembrane protein) (Uncharacterized protein At4g29735) (Uncharacterized protein At4g29735/T16L4.1),Transmembrane protein 7939,10534 At4g29735 (Transmembrane protein) (Uncharacterized protein At4g29735) (Uncharacterized protein At4g29735/T16L4.1),Transmembrane protein integral component of membrane [GO:0016021]; oligosaccharyltransferase I complex [GO:0034998]; protein N-linked glycosylation [GO:0006487] locus:505006534; AT4G29735 Uncharacterised protein family (UPF0197) Os06g0567000 protein (cDNA clone:J023120F03, full insert sequence) Q5Z647 Q5Z647_ORYSJ Os06g0567000 Os06g0567000 OsJ_21735 OSNPB_060567000 P0567G03.21 ENOG411E6AH PANS1,PANS2 Q9LJG6,Q94CK6 PANS1_ARATH,PANS2_ARATH Protein PATRONUS 1 (Protein COPPER MODIFIED RESISTANCE 1),Protein PATRONUS 2 DISRUPTION PHENOTYPE: Reduced fertility when homozygous (PubMed:24206843, PubMed:24506176). High level of gametophytic aneuploidy (PubMed:24506176, PubMed:26272661). Occurrence of split sister centromeres at metaphase I (PubMed:26272661). Pans1 and pans2 double mutants are lethal when homozygous (PubMed:24206843). Increased mono- or divalent ions sensitivity resulting in primary root growth inhibition and increased lateral root density (PubMed:24134393). Hypersensitivity to microtubule-depolymerizing drugs and higher frequency of anaphase bridges under stress conditions (PubMed:26261921). {ECO:0000269|PubMed:24134393, ECO:0000269|PubMed:24206843, ECO:0000269|PubMed:24506176, ECO:0000269|PubMed:26261921, ECO:0000269|PubMed:26272661}.,DISRUPTION PHENOTYPE: No visible phenotype and no meiotic or pollen development defects. Pans1 and pans2 double mutants are lethal when homozygous. {ECO:0000269|PubMed:24206843}. FUNCTION: Required for the maintenance of centromeric cohesion during interkinesis, until meiosis II (PubMed:24206843, PubMed:26272661). Required for regular configuration and segregation of sister chromatids in meiosis II (PubMed:24506176). Also required for centromere cohesion during meiosis I (PubMed:26272661). Involved in spindle organization at the end of telophase I and in meiosis II (PubMed:24506176). Required to prevent precocious release of pericentromeric cohesins during meiosis, but not for cohesion establishment and monopolar orientation of kinetochores at meiosis I (PubMed:24206843). Involved also in somatic development (PubMed:24206843). Regulates mitotic cell division and ploidy stability in somatic cell types (PubMed:24506176). May be involved in the organization of microtubules dynamics (PubMed:24506176). Involved in abiotic stresses and mono- or divalent ions tolerance and may play a role in maintaining meristematic activity under saline conditions (PubMed:24134393). PANS1 and GIG1 are part of a network linking centromere cohesion and cell cycle progression through control of APC/C activity (PubMed:26272661). Regulates the number of dividing cells in root meristem and is necessary for the anaphase onset control through an APC/C-mediated pathway (PubMed:26261921). Involved in maintaining correct chromosome arm cohesion under stress conditions (PubMed:26261921). {ECO:0000269|PubMed:24134393, ECO:0000269|PubMed:24206843, ECO:0000269|PubMed:24506176, ECO:0000269|PubMed:26261921, ECO:0000269|PubMed:26272661}.,FUNCTION: Not required for protection of centromeric cohesion. {ECO:0000269|PubMed:24206843}. MISCELLANEOUS: Patronus is Latin for protector. {ECO:0000305|PubMed:24206843}. 21733,21799 Protein PATRONUS 1 (Protein COPPER MODIFIED RESISTANCE 1),Protein PATRONUS 2 cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; meiotic cell cycle [GO:0051321]; positive regulation of maintenance of meiotic sister chromatid cohesion [GO:0034096]; positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric [GO:2000711]; regulation of mitotic cell cycle [GO:0007346],maintenance of meiotic sister chromatid cohesion [GO:0034090] TISSUE SPECIFICITY: Expressed in somatic and reproductive tissues (PubMed:24206843). Expressed in inflorescence, young buds, roots and basal portion of young leaves (PubMed:26272661). Expressed in proliferating cells such as apical meristems of roots and shoots, expanding cotyledons and leaves, root vascular tissues, and in stomatal precursor cells (PubMed:26261921). {ECO:0000269|PubMed:24206843, ECO:0000269|PubMed:26261921, ECO:0000269|PubMed:26272661}.,TISSUE SPECIFICITY: Expressed in somatic and reproductive tissues. {ECO:0000269|PubMed:24206843}. locus:2087482;,locus:505006604; AT3G14190,AT5G12360 NA NA NA NA NA NA NA NA ENOG411DQK3 PCMP-H70 Q9C9H9 PP114_ARATH Pentatricopeptide repeat-containing protein At1g71420 84022 Pentatricopeptide repeat-containing protein At1g71420 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2825364; AT1G71420 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E79Q T20O10_20 Q9LYC9 Q9LYC9_ARATH Uncharacterized protein T20O10_20 (Zinc metalloproteinase aureolysin) 9147 Uncharacterized protein T20O10_20 (Zinc metalloproteinase aureolysin) locus:2099147; AT3G62920 NA NA NA NA NA NA NA NA ENOG411E79X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0474600 protein Q69JJ3 Q69JJ3_ORYSJ Os09g0474600 OsJ_29735 OSJNBa0026C08.26 OSNPB_090474600 ENOG411E79F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0577375 protein,Os03g0126900 protein,Os12g0476000 protein,Os03g0315200 protein B9FC39,Q0DVJ5,Q2QR12,A0A0P0VWM4 B9FC39_ORYSJ,Q0DVJ5_ORYSJ,Q2QR12_ORYSJ,A0A0P0VWM4_ORYSJ Os04g0577375 OsJ_15871 OSNPB_040577375,Os03g0126900 OSNPB_030126900,Os12g0476000 LOC_Os12g29170 OsJ_36062 OSNPB_120476000,Os03g0315200 OSNPB_030315200 ENOG411E79E BASL Q5BPF3 BASL_ARATH Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE DISRUPTION PHENOTYPE: Clustered stomatal pattern distribution in seedlings characterized by excessive numbers of small epidermal cells, due to impaired meristemoid mother cell (MMC) asymmetric division. Abnormal non-polarized subcellular localization of POLAR in asymmetric dividing cells. {ECO:0000269|PubMed:19523675, ECO:0000269|PubMed:20220310, ECO:0000269|PubMed:21963668}. defective in asymmetric stomatal lineage divisions FUNCTION: Regulates asymmetric cell division, especially in stomatal-lineage cells, probably by modulating subcellular polarization of POLAR. {ECO:0000269|PubMed:19523675, ECO:0000269|PubMed:20220310, ECO:0000269|PubMed:21963668}. 29123 Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE cell cortex [GO:0005938]; extrinsic component of plasma membrane [GO:0019897]; nucleus [GO:0005634]; asymmetric cell division [GO:0008356]; cell cycle [GO:0007049]; regulation of asymmetric cell division [GO:0009786]; stomatal complex development [GO:0010374]; unidimensional cell growth [GO:0009826] DEVELOPMENTAL STAGE: First observed in nuclei of epidermal cells 16 hours post germination. Later confined to cells undergoing asymmetric divisions (e.g. stomatal lineage cells). {ECO:0000269|PubMed:19523675}. TISSUE SPECIFICITY: Expressed in stomatal lineage cells including asymmetrically dividing meristemoid mother cells (MMCs) and meristemoids, and, at lower levels, in their sisters. Also present in vasculature. {ECO:0000269|PubMed:19523675}. locus:2159305; AT5G60880 NA NA NA NA NA NA NA NA ENOG411E79A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mechanosensitive ion channel NA NA NA NA NA NA NA ENOG411E79M CRR3 Q9ZVE7,A0A1P8B0Z4 CRR3_ARATH,A0A1P8B0Z4_ARATH Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic (Probable NDH subunit CRR3) (Protein CHLORORESPIRATORY REDUCTION 3),Chlororespiratory reduction 3 DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:17041026}. FUNCTION: Probable subunit of the chloroplast NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron transport chain. Required for both formation and activity of NDH. May function in assembly or stabilization of the NDH complex. {ECO:0000269|PubMed:17041026}. MISCELLANEOUS: CRR3 is not conserved in cyanobacteria and seems to be a subunit of the NDH complex which is specific to the chloroplast. {ECO:0000305|PubMed:17041026}. 19283,19264 Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic (Probable NDH subunit CRR3) (Protein CHLORORESPIRATORY REDUCTION 3),Chlororespiratory reduction 3 chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; photosynthetic electron transport in photosystem I [GO:0009773],integral component of membrane [GO:0016021] locus:2049572; AT2G01590 NA Os09g0306650 protein A0A0P0XJZ2 A0A0P0XJZ2_ORYSJ Os09g0306650 OSNPB_090306650 ENOG411DQWC MVD1,MVD2 O23722,F4JCU3,A0A1I9LME2 MVD1_ARATH,MVD2_ARATH,A0A1I9LME2_ARATH Diphosphomevalonate decarboxylase MVD1, peroxisomal (EC 4.1.1.33) (Mevalonate 5-diphosphate decarboxylase 1) (AtMDD1) (AtMVD1),Diphosphomevalonate decarboxylase MVD2, peroxisomal (EC 4.1.1.33) (Mevalonate 5-diphosphate decarboxylase 2) (AtMDD2) (AtMVD2),GHMP kinase family protein DISRUPTION PHENOTYPE: Decreased contents of campesterol and sitosterol (by 50% and 30%, respectively, compared with wild type). Decreased emissions of beta-caryophyllene (by 35% compared with wild-type). {ECO:0000269|PubMed:26216978}. FUNCTION: Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids (PubMed:10344201, PubMed:26216978). Is specific for (R)-5-diphosphomevalonate (MVAPP). The catalytic efficiency with (R)-5-phosphomevalonate (MVAP) as substrate is 10000-fold lower than for MVAPP (PubMed:26216978). Can complement a yeast mutant defective in MVD activity (PubMed:10344201). {ECO:0000269|PubMed:10344201, ECO:0000269|PubMed:26216978}.,FUNCTION: Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Is specific for (R)-5-diphosphomevalonate (MVAPP). The catalytic efficiency with (R)-5-phosphomevalonate (MVAP) as substrate is 10000-fold lower than for MVAPP. {ECO:0000269|PubMed:26216978}. PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway; isopentenyl diphosphate from (R)-mevalonate: step 3/3. {ECO:0000305}. ARA:AT2G38700-MONOMER;MetaCyc:AT2G38700-MONOMER; R-ATH-191273;R-ATH-446199; 4.1.1.33; 4.1.1.33 45586,46248,34226 Diphosphomevalonate decarboxylase MVD1, peroxisomal (EC 4.1.1.33) (Mevalonate 5-diphosphate decarboxylase 1) (AtMDD1) (AtMVD1),Diphosphomevalonate decarboxylase MVD2, peroxisomal (EC 4.1.1.33) (Mevalonate 5-diphosphate decarboxylase 2) (AtMDD2) (AtMVD2),GHMP kinase family protein cytosol [GO:0005829]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; diphosphomevalonate decarboxylase activity [GO:0004163]; identical protein binding [GO:0042802]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287]; sterol biosynthetic process [GO:0016126],cytosol [GO:0005829]; peroxisome [GO:0005777]; ATP binding [GO:0005524]; diphosphomevalonate decarboxylase activity [GO:0004163]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287]; sterol biosynthetic process [GO:0016126],cytosol [GO:0005829]; ATP binding [GO:0005524]; diphosphomevalonate decarboxylase activity [GO:0004163]; kinase activity [GO:0016301]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287] locus:2064092;,locus:2080265; AT2G38700,AT3G54250 diphosphomevalonate Diphosphomevalonate decarboxylase (EC 4.1.1.33) (Mevalonate pyrophosphate decarboxylase),Os02g0107200 protein Q6ETS8,A0A0P0VDY6 Q6ETS8_ORYSJ,A0A0P0VDY6_ORYSJ Os02g0109100 OsJ_05052 OSNPB_020109100 P0017C12.29,Os02g0107200 OSNPB_020107200 FUNCTION: Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. {ECO:0000256|RuleBase:RU363086}. ENOG411DQWM SKIP14 Q9LU91 SKI14_ARATH F-box protein SKIP14 (SKP1-interacting partner 14) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 50543 F-box protein SKIP14 (SKP1-interacting partner 14) cytosol [GO:0005829]; nucleus [GO:0005634]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein ubiquitination [GO:0016567] locus:2092145; AT3G26000 F-Box protein Os08g0236800 protein,OJ000223_09.11 protein (OSJNBa0081L15.21 protein) (Os04g0485800 protein) (cDNA clone:J023077K22, full insert sequence) C7J5J0,Q7X920 C7J5J0_ORYSJ,Q7X920_ORYSJ Os08g0236800 Os08g0236800 OSNPB_080236800,OJ000223_09.11 Os04g0485800 OsJ_15248 OSJNBa0081L15.21 OSNPB_040485800 ENOG411DQWS P4H10,P4H11,P4H3 F4JZ24,Q9SZT0,Q9LN20,A0A1P8AX15,F4JZ25 P4H10_ARATH,P4H11_ARATH,P4H3_ARATH,A0A1P8AX15_ARATH,F4JZ25_ARATH Probable prolyl 4-hydroxylase 10 (AtP4H10) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 11 (AtP4H11) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 3 (AtP4H3) (EC 1.14.11.2),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. {ECO:0000250|UniProtKB:Q9ZW86}. ARA:AT4G35820-MONOMER;,ARA:AT1G20270-MONOMER; 1.14.11.2 32598,30754,32867,23351,27667 Probable prolyl 4-hydroxylase 10 (AtP4H10) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 11 (AtP4H11) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 3 (AtP4H3) (EC 1.14.11.2),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656],endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656],iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2156852;,locus:2125344;,locus:2012903; AT5G66060,AT4G35820,AT1G20270 prolyl 4-hydroxylase Os10g0497800 protein (Prolyl 4-hydroxylase alpha subunit, putative, expressed) (cDNA clone:J013136I05, full insert sequence),Os02g0827100 protein (Fragment) Q337H1,Q0DW84 Q337H1_ORYSJ,Q0DW84_ORYSJ Os10g0497800 LOC_Os10g35470 Os10g0497800 OSNPB_100497800,Os02g0827100 Os02g0827100 OSNPB_020827100 ENOG411DQWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frigida-like protein NA NA NA NA NA NA NA ENOG411DQWY RPT1A,RPT1B Q9SSB5,Q9SSB4,F4HTC3,F4HTC5,A0A1P8APR7 PRS7A_ARATH,PRS7B_ARATH,F4HTC3_ARATH,F4HTC5_ARATH,A0A1P8APR7_ARATH 26S proteasome regulatory subunit 7 homolog A (26S proteasome AAA-ATPase subunit RPT1a) (26S proteasome subunit 7 homolog A) (Regulatory particle triple-A ATPase subunit 1a),26S proteasome regulatory subunit 7 homolog B (26S proteasome AAA-ATPase subunit RPT1b) (26S proteasome subunit 7 homolog B) (Regulatory particle triple-A ATPase subunit 1b),26S proteasome regulatory complex ATPase FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 47803,51811,69187,66803,66931 26S proteasome regulatory subunit 7 homolog A (26S proteasome AAA-ATPase subunit RPT1a) (26S proteasome subunit 7 homolog A) (Regulatory particle triple-A ATPase subunit 1a),26S proteasome regulatory subunit 7 homolog B (26S proteasome AAA-ATPase subunit RPT1b) (26S proteasome subunit 7 homolog B) (Regulatory particle triple-A ATPase subunit 1b),26S proteasome regulatory complex ATPase cytosol [GO:0005829]; cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; proteasome regulatory particle, base subcomplex [GO:0008540]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],cytoplasm [GO:0005737]; membrane [GO:0016020]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; proteasome-activating ATPase activity [GO:0036402]; protein catabolic process [GO:0030163]; protein folding [GO:0006457],cytoplasm [GO:0005737]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; proteasome-activating ATPase activity [GO:0036402]; protein catabolic process [GO:0030163]; protein folding [GO:0006457] locus:2024822;,locus:2197066; AT1G53750,AT1G53780 26S protease regulatory subunit 26S proteasome regulatory subunit 7A (26S proteasome AAA-ATPase subunit RPT1A) (26S proteasome subunit 7A) (Regulatory particle triple-A ATPase subunit 1A),26S proteasome regulatory subunit 7B (26S proteasome AAA-ATPase subunit RPT1B) (26S proteasome subunit 7B) (Regulatory particle triple-A ATPase subunit 1B) P0DKJ9,P0DKK0 PRS7A_ORYSJ,PRS7B_ORYSJ RPT1A Os02g0784700 LOC_Os02g54340 OJ1715_H01.26,RPT1B Os06g0192600 LOC_Os06g09290 OsJ_20424 OSJNBa0090D06.53 P0698A06.13 FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity). {ECO:0000250}. ENOG411DQW1 UCNL,UNC Q9LT38,Q9SYB9 UNCL_ARATH,UNC_ARATH Serine/threonine-protein kinase UCNL (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 2 member 4) (Protein UNICORN-LIKE),Serine/threonine-protein kinase UCN (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 2 member 3) (Protein UNICORN) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants ucn-2 and ucnl-5 are embryonic lethal. {ECO:0000269|PubMed:22927420}.,DISRUPTION PHENOTYPE: Ectopic growth in filaments and petals, distortion of integument planar growth and aberrant embryogenesis and partial lethality in ucn-1 embryos. The double mutants ucn-2 and ucnl-5 are embryonic lethal. {ECO:0000269|PubMed:22927420}. FUNCTION: Regulates planar ovule integument development. {ECO:0000269|PubMed:22927420}.,FUNCTION: Regulates planar ovule integument development by suppressing aberrantly oriented growth. Maintains planar growth of integuments by repressing the developmental regulator and transcription factor KAN4 which is involved in the control of early integument growth and polarity. Restricts growth in stamen filaments, petals, and cotyledons. {ECO:0000269|PubMed:22927420}. 2.7.11.1 45889,45665 Serine/threonine-protein kinase UCNL (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 2 member 4) (Protein UNICORN-LIKE),Serine/threonine-protein kinase UCN (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 2 member 3) (Protein UNICORN) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; transcription factor binding [GO:0008134]; integument development [GO:0080060]; intracellular signal transduction [GO:0035556]; negative regulation of cell division [GO:0051782]; protein trans-autophosphorylation [GO:0036290] TISSUE SPECIFICITY: Expressed in the epidermis and cortex of the transition zone of the root apex. Expressed in rosette leaves, stems, flowers and siliques. {ECO:0000269|PubMed:22927420}.,TISSUE SPECIFICITY: Expressed in the epidermis and cortex of the transition zone of the root apex and developing flowers. Expressed in rosette leaves, stems and siliques. {ECO:0000269|PubMed:22927420}. locus:2091881;,locus:2008331; AT3G20830,AT1G51170 serine threonine-protein kinase Os08g0504800 protein (cDNA clone:J023022B21, full insert sequence),Os09g0486700 protein Q6Z3S9,Q0J0R6 Q6Z3S9_ORYSJ,Q0J0R6_ORYSJ Os08g0504800 OJ1134_H03.13 OsJ_27863 OSJNBa0025J22.3 OSNPB_080504800,Os09g0486700 OSNPB_090486700 ENOG411DQW2 ChlADR1 Q9FZ42,Q9MA93,A0A1P8AU36 ADRC1_ARATH,GRDH2_ARATH,A0A1P8AU36_ARATH NADPH-dependent aldehyde reductase 1, chloroplastic (AtChlADR1) (EC 1.1.1.-) (Glucose and ribitol dehydrogenase homolog 1),Glucose and ribitol dehydrogenase homolog 2 (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein FUNCTION: Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons (PubMed:21169366). No activity on alpha,beta-unsaturated ketones (PubMed:21169366). Can use propionaldehyde, butyraldehyde, methylglyoxal, (e)-2-pentenal, (E)-2-hexenal, (Z)-3-hexenal and (E)-2-nonenal as substrates, but not propenal (acrolein), crotonaldehyde, 2-butanone, 3-buten-2-one or 1-penten-3-one (PubMed:21169366). May act as a short alcohol-polyol-sugar dehydrogenase possibly related to carbohydrate metabolism and the acquisition of desiccation tolerance (By similarity). May also be involved in signal transduction (By similarity). {ECO:0000250, ECO:0000269|PubMed:21169366}.,FUNCTION: May act as a short alcohol-polyol-sugar dehydrogenase possibly related to carbohydrate metabolism and the acquisition of desiccation tolerance. May also be involved in signal transduction (By similarity). {ECO:0000250}. ARA:AT1G54870-MONOMER;MetaCyc:AT1G54870-MONOMER;,ARA:AT3G05260-MONOMER; 1.1.1.- 31387,31452,36967 NADPH-dependent aldehyde reductase 1, chloroplastic (AtChlADR1) (EC 1.1.1.-) (Glucose and ribitol dehydrogenase homolog 1),Glucose and ribitol dehydrogenase homolog 2 (EC 1.1.1.-),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; oxidation-reduction process [GO:0055114],oxidoreductase activity [GO:0016491] locus:2011005;,locus:2096284; AT1G54870,AT3G05260 Glucose and ribitol Glucose and ribitol dehydrogenase homolog (EC 1.1.1.-),Os05g0140800 protein Q75KH3,Q0DKV9 GRDH_ORYSJ,Q0DKV9_ORYSJ Os05g0140800 LOC_Os05g04870 OJ1489_G03.3 OSJNBb0111O13.13,Os05g0140800 Os05g0140800 OSNPB_050140800 FUNCTION: May act as a short alcohol-polyol-sugar dehydrogenase possibly related to carbohydrate metabolism and the acquisition of desiccation tolerance. May also be involved in signal transduction (By similarity). {ECO:0000250}. ENOG411DQW3 PER64 Q43872 PER64_ARATH Peroxidase 64 (Atperox P64) (EC 1.11.1.7) (ATP17a) (PRXR4) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G42180-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 34706 Peroxidase 64 (Atperox P64) (EC 1.11.1.7) (ATP17a) (PRXR4) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in the whole plant, but preferentially in roots. locus:2165820; AT5G42180 peroxidase Peroxidase (EC 1.11.1.7) Q6EP33,Q6EP34 Q6EP33_ORYSJ,Q6EP34_ORYSJ P0264G11.1-2 OJ1282_E10.22-2 Os02g0833900 OSNPB_020833900,P0264G11.1-1 OJ1282_E10.22-1 Os02g0833900 OSNPB_020833900 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DQW8 VPS53,HIT1 Q0WQF4,F4I7Y2,A0A1P8ATX5,A0A1P8ATZ0,A0A1P8AWN0,A0A1P8AWQ9 VP53A_ARATH,VP53B_ARATH,A0A1P8ATX5_ARATH,A0A1P8ATZ0_ARATH,A0A1P8AWN0_ARATH,A0A1P8AWQ9_ARATH Vacuolar protein sorting-associated protein 53 A (AtVPS53) (Protein HEAT-INTOLERANT 1),Vacuolar protein sorting-associated protein 53 B,Membrane trafficking VPS53 family protein DISRUPTION PHENOTYPE: Lethal when homozygous. In hemizygous plants, male-specific transmission defect. {ECO:0000269|PubMed:16408208, ECO:0000269|PubMed:18583349}. Reduced transmission of allele through pollen. Homozygotes cannot be recovered. Suspected embryo lethality of homozygotes because reduced seed set is observed in siliques of plants segregating homozygotes.Mature pollen grains appear WT suggesting that defect occurs at a later stage. Vegetative development appears normal. Null: Male gametophyte defective; Embryo defective (inferred); Knockdown: Sensitive to high temperature and osmotic stress-S. Wu-2006 FUNCTION: Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Required for vesicle trafficking involved in plasma membrane protein composition. Probably involved in pollen tube elongation and other polar growth. Confers basal tolerance to long-term heat stress and osmotic stress, by acclimation of the plasma membrane. {ECO:0000250, ECO:0000269|PubMed:16408208, ECO:0000269|PubMed:18583349, ECO:0000269|PubMed:21398432, ECO:0000269|PubMed:21758000, ECO:0000269|Ref.4}.,FUNCTION: Involved in retrograde transport from early and late endosomes to late Golgi, leading to the membrane fusion between late Golgi and endosomal vesicles. {ECO:0000250}. 92530,64125,92069,76816,53886,57987 Vacuolar protein sorting-associated protein 53 A (AtVPS53) (Protein HEAT-INTOLERANT 1),Vacuolar protein sorting-associated protein 53 B,Membrane trafficking VPS53 family protein cytosol [GO:0005829]; endosome membrane [GO:0010008]; GARP complex [GO:0000938]; Golgi membrane [GO:0000139]; mitochondrion [GO:0005739]; heat acclimation [GO:0010286]; plasma membrane organization [GO:0007009]; protein transport [GO:0015031]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; retrograde transport, endosome to Golgi [GO:0042147]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],cytosol [GO:0005829]; endosome membrane [GO:0010008]; GARP complex [GO:0000938]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147] TISSUE SPECIFICITY: Present in pollen. Mostly expressed in vegetative tissues, including leaves, siliques, and stems, and flower buds, and, at lower levels, in roots and mature flowers. {ECO:0000269|PubMed:15235115, ECO:0000269|PubMed:16408208}. locus:2015826;,locus:2036396; AT1G50500,AT1G50970 Vacuolar protein sorting-associated protein 53 Os01g0906200 protein (Fragment) A0A0N7KE95 A0A0N7KE95_ORYSJ Os01g0906200 OSNPB_010906200 ENOG411EA0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like NA NA NA NA NA NA NA ENOG411EE59 GOLS3,GolS3 O80518,A0A1P8AN71 GOLS3_ARATH,A0A1P8AN71_ARATH Galactinol synthase 3 (AtGolS3) (GolS-3) (EC 2.4.1.123),Hexosyltransferase (EC 2.4.1.-) FUNCTION: Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. May promote plant stress tolerance (By similarity). {ECO:0000250}. 2.4.1.123; 2.4.1.123,2.4.1.- 38677,27391 Galactinol synthase 3 (AtGolS3) (GolS-3) (EC 2.4.1.123),Hexosyltransferase (EC 2.4.1.-) cytoplasm [GO:0005737]; inositol 3-alpha-galactosyltransferase activity [GO:0047216]; metal ion binding [GO:0046872]; galactose metabolic process [GO:0006012]; response to cold [GO:0009409]; response to oxidative stress [GO:0006979],inositol 3-alpha-galactosyltransferase activity [GO:0047216]; galactose metabolic process [GO:0006012] locus:2012320; AT1G09350 Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411EE5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NA NA NA NA NA NA NA ENOG411EE5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EE5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region DNA binding protein-like (Os07g0208600 protein) (cDNA clone:J013094N02, full insert sequence) Q84ZN5 Q84ZN5_ORYSJ OJ1559_F09.121 Os07g0208600 OJ1136_A05.11 OsJ_23517 OSNPB_070208600 ENOG411EE5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os02g0623932 protein A0A0P0VLZ0 A0A0P0VLZ0_ORYSJ Os02g0623932 OSNPB_020623932 ENOG411EE5Z CSLD6 Q9FVR3 CSLD6_ARATH Putative cellulose synthase-like protein D6 (AtCslD6) (EC 2.4.1.-) FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ARA:AT1G32180-MONOMER; 2.4.1.- 109653 Putative cellulose synthase-like protein D6 (AtCslD6) (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall organization or biogenesis [GO:0071669] locus:2031740; AT1G32180 Cellulose synthase NA NA NA NA NA NA NA ENOG411DRX2 AP22.7,C7A10.170 B9DFJ9,O23167 B9DFJ9_ARATH,O23167_ARATH AT4G37190 protein (Plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein),At4g37190 (Plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein) (Tubulin-like protein) 56915,62204 AT4G37190 protein (Plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein),At4g37190 (Plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein) (Tubulin-like protein) GTPase activity [GO:0003924],cytosol [GO:0005829]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; GTPase activity [GO:0003924]; mitochondrion organization [GO:0007005] locus:2115035; AT4G37190 Protein misato homolog Expressed protein (Os03g0240900 protein),Os12g0586400 protein Q10PA8,A0A0P0YBU3 Q10PA8_ORYSJ,A0A0P0YBU3_ORYSJ Os03g0240900 LOC_Os03g13770 Os03g0240900 OSNPB_030240900,Os12g0586400 OSNPB_120586400 ENOG411DRX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWWP domain Os07g0694500 protein (PWWP domain protein-like) (cDNA clone:J013116B13, full insert sequence) (cDNA clone:J033124O22, full insert sequence),Os07g0694500 protein Q6Z3Y5,Q0D3C0 Q6Z3Y5_ORYSJ,Q0D3C0_ORYSJ P0627E10.12-2 Os07g0694500 OSNPB_070694500,Os07g0694500 Os07g0694500 OSNPB_070694500 ENOG411DRX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase Os09g0533600 protein (cDNA clone:J023038G05, full insert sequence) Q69SG8 Q69SG8_ORYSJ Os09g0533600 Os09g0533600 OJ1112_E07.14 OsJ_30123 OSNPB_090533600 P0515E01.33 ENOG411DRX1 HIRA Q9LXN4,A0A1I9LN40,A0A1I9LN41 HIRA_ARATH,A0A1I9LN40_ARATH,A0A1I9LN41_ARATH Protein HIRA (Histone regulator protein),Protein HIRA DISRUPTION PHENOTYPE: Plants are embryo lethal when homozygous. {ECO:0000269|PubMed:16243907}. Homozygotes are embryo lethal- segregates at 25%. Embryo defective-M. Tiemmermans-2007 FUNCTION: Histone chaperone involved in maintining knox genes silencing throughout leaf development (PubMed:16243907). Involved in heterochromatic and euchromatic gene silencing, especially upon salt stress (PubMed:25600486). Involved in gene expression reprogramming during dedifferentiation probably by modifying histone H3.3 recruitment at the nucleolus (PubMed:25086063, PubMed:25600486). Contributes to maintenance of silencing of pericentromeric repeats and certain transposons (PubMed:25600486). {ECO:0000269|PubMed:16243907, ECO:0000269|PubMed:25086063, ECO:0000269|PubMed:25600486}.,FUNCTION: Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle. {ECO:0000256|RuleBase:RU364014}. 112390,96914,81926 Protein HIRA (Histone regulator protein),Protein HIRA nuclear chromatin [GO:0000790]; nucleosome binding [GO:0031491]; transcription corepressor activity [GO:0003714]; covalent chromatin modification [GO:0016569]; DNA replication-independent nucleosome assembly [GO:0006336]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the meristem and developing leaf primordia. {ECO:0000269|PubMed:16243907}. AT3G44530 chromatin modification Protein HIRA (Histone regulator protein) Q652L2 HIRA_ORYSJ Os09g0567700 LOC_Os09g39420 OJ1003_C09.2 OJ1155_H10.34 OsJ_029198 FUNCTION: Histone chaperone involved in maintining knox genes silencing throughout leaf development. {ECO:0000250}. ENOG411DRX6 Q0WWD8,Q6NKR6 Q0WWD8_ARATH,Q6NKR6_ARATH Exostosin family protein (Uncharacterized protein At3g57630),At3g57630 (Exostosin family protein) (Glycosyltransferase) 90746,90932 Exostosin family protein (Uncharacterized protein At3g57630),At3g57630 (Exostosin family protein) (Glycosyltransferase) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2076691; AT3G57630 exostosin-like glycosyltransferase Exostosin family protein, putative, expressed (Os03g0174300 protein) (cDNA clone:J013123J15, full insert sequence) Q10R19 Q10R19_ORYSJ Os03g0174300 LOC_Os03g07820 Os03g0174300 OSNPB_030174300 ENOG411DRX7 MAJ23.90 Q93VH5 Q93VH5_ARATH AT5g10730/MAJ23_90 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein AT5g10730) 31045 AT5g10730/MAJ23_90 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein AT5g10730) plasma membrane [GO:0005886]; NADH dehydrogenase activity [GO:0003954]; ubiquinone-6 biosynthetic process [GO:1901006] locus:2159674; AT5G10730 NAD dependent epimerase/dehydratase family Dehydrogenase-like protein (Os02g0556100 protein) (cDNA clone:006-210-E01, full insert sequence) (cDNA clone:J033119M03, full insert sequence) Q6ZI86 Q6ZI86_ORYSJ Os02g0556100 OJ1008_F08.11 OsJ_07133 OSNPB_020556100 ENOG411DRX4 RS40,RS41 P92965,P92966,A0A1P8B539,A0A1P8BAJ3 RS40_ARATH,SRS41_ARATH,A0A1P8B539_ARATH,A0A1P8BAJ3_ARATH Serine/arginine-rich splicing factor RS40 (At-RSp40) (AtRS40),Serine/arginine-rich splicing factor RS41 (At-RSp41) (AtRS41),Arginine/serine-rich splicing factor 35,RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: Mutant seedlings show increased sensitivity to salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:24146632}. FUNCTION: Required for constitutive and alternative pre-mRNA splicing (Probable). Involved in primary miRNA processing and pri-miRNA biogenesis. Binds both intronless and intron-containing pri-miRNAs (PubMed:26227967). {ECO:0000269|PubMed:26227967, ECO:0000305|PubMed:24146632}. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}. 40319,41282,37890,36386 Serine/arginine-rich splicing factor RS40 (At-RSp40) (AtRS40),Serine/arginine-rich splicing factor RS41 (At-RSp41) (AtRS41),Arginine/serine-rich splicing factor 35,RNA-binding (RRM/RBD/RNP motifs) family protein nuclear dicing body [GO:0010445]; nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; primary miRNA processing [GO:0031053]; RNA splicing [GO:0008380],nuclear dicing body [GO:0010445]; nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; mRNA splicing, via spliceosome [GO:0000398]; primary miRNA processing [GO:0031053]; RNA splicing [GO:0008380],RNA binding [GO:0003723] TISSUE SPECIFICITY: Highly expressed in roots and flowers. A presumably longer alternatively spliced form is found in leaves, stems and flowers. {ECO:0000269|PubMed:16936312}.,TISSUE SPECIFICITY: Leaves, stem, roots and flowers. locus:2131864;,locus:2173088; AT4G25500,AT5G52040 Arginine serine-rich-splicing factor NA NA NA NA NA NA NA ENOG411DRX5 Q9T023 Q9T023_ARATH RING finger family protein (RING/U-box superfamily protein) (Uncharacterized protein At4g39140) (Uncharacterized protein At4g39140; T22F8.40) (Uncharacterized protein T22F8.40) 47548 RING finger family protein (RING/U-box superfamily protein) (Uncharacterized protein At4g39140) (Uncharacterized protein At4g39140; T22F8.40) (Uncharacterized protein T22F8.40) locus:2136368; AT4G39140 RING NA NA NA NA NA NA NA ENOG411DRX8 TPS14 Q84UV0,F4HVE4 LINS_ARATH,F4HVE4_ARATH S-(+)-linalool synthase, chloroplastic (EC 4.2.3.25) (Terpenoid synthase 14) (AtTPS14),Terpene synthase 14 FUNCTION: Involved in monoterpene (C10) biosynthesis. The major product is S-(+)-linalool. {ECO:0000269|PubMed:12566586}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT1G61680-MONOMER; 4.2.3.25 65401,64558 S-(+)-linalool synthase, chloroplastic (EC 4.2.3.25) (Terpenoid synthase 14) (AtTPS14),Terpene synthase 14 chloroplast [GO:0009507]; magnesium ion binding [GO:0000287]; S-linalool synthase activity [GO:0034007]; terpene synthase activity [GO:0010333]; monoterpene biosynthetic process [GO:0043693]; terpenoid biosynthetic process [GO:0016114],magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Predominantly expressed in flowers but also in stems and siliques. {ECO:0000269|PubMed:12566586}. locus:2195768; AT1G61680 synthase S-(+)-linalool synthase, chloroplastic (OsLIS) (EC 4.2.3.25),Os10g0489500 protein Q6ZH94,A0A0P0XWI8 LINS_ORYSJ,A0A0P0XWI8_ORYSJ LIS Os02g0121700 OJ1020_C02.21,Os10g0489500 OSNPB_100489500 FUNCTION: Involved in monoterpene (C10) biosynthesis. The major product is S-(+)-linalool. Linalool production is induced by jasmonate in response to pathogen attack, it possesses antibacterial activity and is important for resistance to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae (Xoo). Plants over-expressing linalool synthase display enhanced resistance to Xoo. {ECO:0000269|PubMed:23889289}. ENOG411DRX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Halo-acid dehalogenase-like hydrolase Os05g0168300 protein (cDNA clone:J013052M23, full insert sequence) Q60DU2 Q60DU2_ORYSJ Os05g0168300 Os05g0168300 OsJ_17267 OSJNBa0086E02.13 OSNPB_050168300 ENOG411DRXR TIC22 Q9SZB2 TIC22_ARATH Protein TIC 22, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 22) (AtTIC22) FUNCTION: Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence (By similarity). {ECO:0000250}. 30105 Protein TIC 22, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 22) (AtTIC22) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast intermembrane space [GO:0031972]; membrane [GO:0016020]; plastid [GO:0009536]; protein transport [GO:0015031] locus:2119146; AT4G33350 Tic22-like family Os06g0213200 protein (Fragment) Q0DDN2 Q0DDN2_ORYSJ Os06g0213200 Os06g0213200 OSNPB_060213200 ENOG411DRXS MNC6.11,MJC20.4 Q94BY9,Q67YN2,F4JX92 Q94BY9_ARATH,Q67YN2_ARATH,F4JX92_ARATH AT5g53570/MNC6_11 (Ypt/Rab-GAP domain of gyp1p superfamily protein),GTPase activator protein of Rab-like small GTPases-like protein (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein R-ATH-8854214; 61916,62333,64655 AT5g53570/MNC6_11 (Ypt/Rab-GAP domain of gyp1p superfamily protein),GTPase activator protein of Rab-like small GTPases-like protein (Ypt/Rab-GAP domain of gyp1p superfamily protein),Ypt/Rab-GAP domain of gyp1p superfamily protein endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338],endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2165710;,locus:2168591; AT5G53570,AT5G41940 RabGAP TBC domain-containing protein Os10g0518100 protein (Putative GTPase activating protein) (RabGAP/TBC domain-containing protein, putative, expressed) (cDNA clone:J013108O08, full insert sequence) (cDNA clone:J013164O13, full insert sequence),Os08g0547200 protein (Putative GTPase-activating protein GYP7 (GAP for YPT7)) (cDNA clone:002-117-B08, full insert sequence),Os09g0528800 protein (Putative GTPase activating protein) (cDNA clone:J023043K12, full insert sequence) Q7XCR7,Q6Z9D7,Q69NG6 Q7XCR7_ORYSJ,Q6Z9D7_ORYSJ,Q69NG6_ORYSJ Os10g0518100 LOC_Os10g37410 Os10g0518100 OSJNBa0076F20.7 OSNPB_100518100,Os08g0547200 Os08g0547200 OsJ_28177 OSNPB_080547200 P0544G09.9,Os09g0528800 Os09g0528800 OJ1531_B07.10 OSNPB_090528800 ENOG411DRXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0278700 protein (Fragment) A0A0P0VW53 A0A0P0VW53_ORYSJ Os03g0278700 OSNPB_030278700 ENOG411DRXQ MSI2,MSI3 O22468,O22469 MSI2_ARATH,MSI3_ARATH WD-40 repeat-containing protein MSI2,WD-40 repeat-containing protein MSI3 FUNCTION: Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. {ECO:0000250}. R-ATH-212300;R-ATH-2559580;R-ATH-3214847;R-ATH-3214858;R-ATH-8951664; 46704,47983 WD-40 repeat-containing protein MSI2,WD-40 repeat-containing protein MSI3 Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; nucleus [GO:0005634]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2059856;,locus:2131551; AT2G16780,AT4G35050 WD-40 repeat-containing protein Os09g0540600 protein (Putative WD-40 repeat protein) (cDNA clone:J033066F16, full insert sequence) (cDNA clone:J033127N09, full insert sequence),Os07g0139700 protein Q651E0,A0A0P0X2I9 Q651E0_ORYSJ,A0A0P0X2I9_ORYSJ Os09g0540600 B1274F11.21 OsJ_30177 OSNPB_090540600,Os07g0139700 OSNPB_070139700 ENOG411DRXV BHLH92 Q9FIX5,A0A1P8BB16 BH092_ARATH,A0A1P8BB16_ARATH Transcription factor bHLH92 (Basic helix-loop-helix protein 92) (AtbHLH92) (bHLH 92) (Transcription factor EN 22) (bHLH transcription factor bHLH092),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein Root growth sensitive to mannitol-M. Deyholos-2009 29012,25221 Transcription factor bHLH92 (Basic helix-loop-helix protein 92) (AtbHLH92) (bHLH 92) (Transcription factor EN 22) (bHLH transcription factor bHLH092),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2158392; AT5G43650 Transcription factor Transcription factor BHLH148 (Basic helix-loop-helix protein 148) (OsbHLH148) (bHLH transcription factor bHLH148) Q75KV9 BH148_ORYSJ BHLH148 Os03g0741100 LOC_Os03g53020 OJ1365_D05.18 FUNCTION: May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}. MISCELLANEOUS: Plants over-expressing BHLH148 display drought tolerance. {ECO:0000269|PubMed:21332845}. ENOG411DRXW LIP2p P0C7R2,Q948J9 LIPBL_ARATH,LIP2P_ARATH Putative lipoyltransferase-like protein, chloroplastic (EC 2.3.1.-) (Lipoate-protein ligase-like protein) (Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase-like protein),Plastidial lipoyltransferase 2 (EC 2.3.1.-) (Lipoate-protein ligase 2p) (Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase 2p) FUNCTION: Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the transfer of the endogenously synthesized lipoate to apoproteins, creating an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes. Utilizes lipoyl-acyl-carrier-protein as a source of lipoyl groups, although octanoyl groups from octanoyl-ACP can also be transferred to the lipoyl domain of apoproteins. {ECO:0000269|PubMed:11602263}. PATHWAY: Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 1/2.,PATHWAY: Protein modification; protein lipoylation via endogenous pathway. ARA:AT1G47578-MONOMER;,ARA:AT4G31050-MONOMER; 2.3.1.- 32085,31859 Putative lipoyltransferase-like protein, chloroplastic (EC 2.3.1.-) (Lipoate-protein ligase-like protein) (Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase-like protein),Plastidial lipoyltransferase 2 (EC 2.3.1.-) (Lipoate-protein ligase 2p) (Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase 2p) chloroplast [GO:0009507]; lipoyl(octanoyl) transferase activity [GO:0033819]; octanoyltransferase activity [GO:0016415]; lipoate biosynthetic process [GO:0009107]; protein lipoylation [GO:0009249] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:11602263}. locus:6530298157;,locus:2126609; AT1G47578,AT4G31050 lipoyltransferase Lipoate-protein ligase B containing protein, expressed (Os12g0596000 protein) (cDNA clone:J033048H21, full insert sequence) Q2QMP8 Q2QMP8_ORYSJ LOC_Os12g40450 Os12g0596000 OsJ_36739 OSNPB_120596000 ENOG411DRXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0687200 protein) (cDNA clone:J013106E15, full insert sequence) Q6AVV7 Q6AVV7_ORYSJ OSJNBb0024N19.8 LOC_Os03g48190 Os03g0687200 OSNPB_030687200 ENOG411DRXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family AAA-type ATPase-like (Os02g0706500 protein) (cDNA clone:J033023H03, full insert sequence),Os02g0706500 protein Q6YV37,A0A0P0VNL6 Q6YV37_ORYSJ,A0A0P0VNL6_ORYSJ Os02g0706500 P0680A05.31-1 Os02g0706500 OsJ_08089 OSJNBb0060O16.5-1 OSNPB_020706500,Os02g0706500 OSNPB_020706500 ENOG411DRXZ KAS2 Q9C9P4 KASC2_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (EC 2.3.1.41) (Beta-ketoacyl-acyl-carrier-protein synthase II) (AtKAS2) (Beta-ketoacyl-ACP synthetase 2) (Protein FATTY ACID BIOSYNTHESIS 1) DISRUPTION PHENOTYPE: Lethal when homozygous due to embryo abortion before the torpedo stage. Converts temperate oilseed composition (rich in unsaturated 18-carbon fatty acids) to that of a palm-like tropical oil (enriched in saturated 16-carbon fatty acids). {ECO:0000269|PubMed:17360594, ECO:0000269|PubMed:18506098}. embryo lethal. Null: Embryo lethal; Preglobular / Globular; Knockdown: Elevated 16:0 fatty acid levels; Sensitive to low temperature-J. Browse-2002 FUNCTION: Essential protein that catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-16 and C-16 to unsaturated C-18 fatty acids. Confers resistance to low temperatures by maintaining chloroplast membranes integrity. Involved in the regulation of fatty acids ratios during seed metabolism. Required for embryo development, especially at the transition from the globular to the heart stage. {ECO:0000269|PubMed:12148534, ECO:0000269|PubMed:12232312, ECO:0000269|PubMed:12242349, ECO:0000269|PubMed:17360594, ECO:0000269|PubMed:18506098, ECO:0000269|PubMed:9046588}. ARA:AT1G74960-MONOMER;ARA:GQT-1583-MONOMER;ARA:MONOMER-14118;MetaCyc:MONOMER-14118; 2.3.1.179; 2.3.1.41 57600 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (EC 2.3.1.41) (Beta-ketoacyl-acyl-carrier-protein synthase II) (AtKAS2) (Beta-ketoacyl-ACP synthetase 2) (Protein FATTY ACID BIOSYNTHESIS 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3-oxoacyl-[acyl-carrier-protein] synthase activity [GO:0004315]; cold acclimation [GO:0009631]; embryo development ending in seed dormancy [GO:0009793]; fatty acid biosynthetic process [GO:0006633]; unsaturated fatty acid biosynthetic process [GO:0006636] DEVELOPMENTAL STAGE: First observed during the transition from the late globular to the early heart embryo stages. Later observed during heart, tropedo, and cotyledonary embryo stages. In seedlings, observed in the shoot apex and stomatal guard cells. In adult plants, expressed in inflorescences. In flowers, strongly present in styles and pollen grains. {ECO:0000269|PubMed:18506098}. TISSUE SPECIFICITY: Mostly expressed in siliques, and, to a lower extent, in leaves, stems, flower buds, and flowers. {ECO:0000269|PubMed:18506098}. locus:2027252; AT1G74960 3-oxoacyl- acyl-carrier-protein synthase Os07g0616200 protein (Putative 3-oxoacyl-[acyl-carrier-protein] synthase) (cDNA clone:J013098L18, full insert sequence) Q8H3I6 Q8H3I6_ORYSJ B1056G08.109 Os07g0616200 OSNPB_070616200 ENOG411DRXX THF1 Q9SKT0 THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic M2-6 mutant plants exhibited higher light sensitivity. M2-6 plants lost a larger fraction of Fv/Fm values with increasing light intensities as compared with Columbia-1 wild-type plants. Furthermore M2-6 plants grew much slower than wild-type plants. The mutant plants were variegated containing large areas lacking chlorophyll.,thf1-1 Root Growth Is Hypersensitive to Increased D-Glucose Slow growth; Variegated leaves-H. Pakrasi-2005 FUNCTION: Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development. Also involved in a sugar-signaling mechanism in roots by mediating signaling between the plasma membrane and the plastid. Probably acts downstream of the plasma membrane-delimited heterotrimeric G-protein GPA1 in a D-glucose signaling pathway. {ECO:0000269|PubMed:15516501, ECO:0000269|PubMed:16582010}. 33796 Protein THYLAKOID FORMATION 1, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastid inner membrane [GO:0009528]; plastid outer membrane [GO:0009527]; plastid stroma [GO:0009532]; stromule [GO:0010319]; chlorophyll catabolic process [GO:0015996]; photosystem II assembly [GO:0010207]; positive regulation of stomatal opening [GO:1902458]; protein import into chloroplast stroma [GO:0045037]; protein import into chloroplast thylakoid membrane [GO:0045038]; regulation of reactive oxygen species biosynthetic process [GO:1903426]; regulation of response to water deprivation [GO:2000070]; sugar mediated signaling pathway [GO:0010182]; thylakoid membrane organization [GO:0010027] DEVELOPMENTAL STAGE: Rapidly degraded upon D-glucose but not L-glucose treatment (at protein level). Accumulates in leaves of plants grown under normal long daylight (16 hours)/dark (8 hours) conditions. Levels are greatly reduced in leaves from plants placed in complete darkness for 24 hours. Transcript levels return to normal within 6 hours after plants are returned to normal light levels. TISSUE SPECIFICITY: Ubiquitous. Present at higher level in hypocotyls (at protein level). Ubiquitously expressed in all organs, in roots of both light-grown and dark-grown seedlings. Highly expressed in the root apical meristems. {ECO:0000269|PubMed:15516501, ECO:0000269|PubMed:16582010}. locus:2051353; AT2G20890 Protein THYLAKOID FORMATION1 Protein THYLAKOID FORMATION1, chloroplastic,Os07g0558500 protein (Fragment) Q84PB7,A0A0P0X7N4 THF1_ORYSJ,A0A0P0X7N4_ORYSJ THF1 Os07g0558500 LOC_Os07g37250 OsJ_24722 P0567H04.15-1,Os07g0558500 OSNPB_070558500 FUNCTION: Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development (By similarity). {ECO:0000250}. ENOG411DRXY ECT11 Q56XH8,A1L4X2,A0A1P8ANN7 Q56XH8_ARATH,A1L4X2_ARATH,A0A1P8ANN7_ARATH Evolutionarily conserved C-terminal region 11 (Uncharacterized protein At1g09810),At1g09810 (Evolutionarily conserved C-terminal region 11),Evolutionarily conserved C-terminal region 11 53525,49203,51656 Evolutionarily conserved C-terminal region 11 (Uncharacterized protein At1g09810),At1g09810 (Evolutionarily conserved C-terminal region 11),Evolutionarily conserved C-terminal region 11 RNA binding [GO:0003723] locus:2024286; AT1G09810 Evolutionarily conserved C-terminal region NA NA NA NA NA NA NA ENOG411DRXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein (F-box domain, putative) (Os10g0197800 protein),F-box domain containing protein (Os10g0183800 protein),Os01g0751200 protein,Os01g0751250 protein Q7G4E5,Q7G6C2,A0A0P0V876,A0A0P0V8A0 Q7G4E5_ORYSJ,Q7G6C2_ORYSJ,A0A0P0V876_ORYSJ,A0A0P0V8A0_ORYSJ Os10g0197800 LOC_Os10g12200 OSJNBa0041L14.30 OSNPB_100197800,Os10g0183800 LOC_Os10g10420 OsJ_30902 OSJNAb0022I16.11 OSJNBa0029P16.21 OSNPB_100183800,Os01g0751200 OSNPB_010751200,Os01g0751250 OSNPB_010751250 ENOG411DRXC PIRL3 Q8W4Q3 PIRL3_ARATH Plant intracellular Ras-group-related LRR protein 3 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. 51648 Plant intracellular Ras-group-related LRR protein 3 protein serine/threonine kinase activity [GO:0004674]; microgametogenesis [GO:0055046]; protein autophosphorylation [GO:0046777] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:15809230}. locus:2010326; AT1G12970 LRR_TYP NA NA NA NA NA NA NA ENOG411DRXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain OSJNBa0053K19.29 protein (OSJNBb0060E08.5 protein) (Os04g0625700 protein),Os04g0625600 protein Q7X8M3,Q0J9Y3 Q7X8M3_ORYSJ,Q0J9Y3_ORYSJ Os04g0625700 OSJNBa0053K19.29 OSJNBb0060E08.5 OSNPB_040625700,Os04g0625600 Os04g0625600 OSNPB_040625600 ENOG411DRXF VDAC1,VDAC3 Q9SRH5,Q9FHQ9,Q9SMX3 VDAC1_ARATH,VDACL_ARATH,VDAC3_ARATH Mitochondrial outer membrane protein porin 1 (Voltage-dependent anion-selective channel protein 1) (AtVDAC1) (VDAC-1),Putative mitochondrial outer membrane protein porin-like (Voltage-dependent anion-selective channel protein-like),Mitochondrial outer membrane protein porin 3 (Protein HYPERSENSITIVE RESPONSE 2) (Athsr2) (Voltage-dependent anion-selective channel protein 3) (AtVDAC3) (VDAC-3) DISRUPTION PHENOTYPE: In vdac1-6 homozygous plants, normal growth, but small siliques and decreased pollen germination rate and tube length. {ECO:0000269|PubMed:21705391}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21705391}. FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant development at reproductive stage, is important for pollen development and may regulate hydrogen peroxide generation during disease resistance. {ECO:0000250, ECO:0000269|PubMed:21705391}.,FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). {ECO:0000250}. Parkinson's disease (05012),HTLV-I infection (05166),Huntington's disease (05016),Calcium signaling pathway (04020) 29425,18262,29211 Mitochondrial outer membrane protein porin 1 (Voltage-dependent anion-selective channel protein 1) (AtVDAC1) (VDAC-1),Putative mitochondrial outer membrane protein porin-like (Voltage-dependent anion-selective channel protein-like),Mitochondrial outer membrane protein porin 3 (Protein HYPERSENSITIVE RESPONSE 2) (Athsr2) (Voltage-dependent anion-selective channel protein 3) (AtVDAC3) (VDAC-3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plastid [GO:0009536]; pore complex [GO:0046930]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; porin activity [GO:0015288]; voltage-gated anion channel activity [GO:0008308]; defense response [GO:0006952]; response to bacterium [GO:0009617],mitochondrial outer membrane [GO:0005741]; transmembrane transport [GO:0055085],cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; membrane [GO:0016020]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plastid [GO:0009536]; pore complex [GO:0046930]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; porin activity [GO:0015288]; voltage-gated anion channel activity [GO:0008308]; aerobic respiration [GO:0009060]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626]; regulation of seed germination [GO:0010029]; response to bacterium [GO:0009617]; response to cold [GO:0009409]; response to cytokinin [GO:0009735] TISSUE SPECIFICITY: Expressed in shoot meristems, root meristematic zone, lateral roots, leaves, stigma and anthers. {ECO:0000269|PubMed:21705391}.,TISSUE SPECIFICITY: Expressed in leaf tips, anthers and stigma. {ECO:0000269|PubMed:21705391}. locus:2100252;,locus:2151749;,locus:2147820; AT3G01280,AT5G37610,AT5G15090 mitochondrial outer membrane protein porin Mitochondrial outer membrane protein porin 3 (Voltage-dependent anion-selective channel protein 3) (OsVDAC3) Q7F4F8 VDAC3_ORYSJ VDAC3 Os01g0588200 LOC_Os01g40570 OsJ_02405 P0700A11.20 FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). {ECO:0000250}. ENOG411DRXG RIN13 Q9SK71 Q9SK71_ARATH At2g20310 (RPM1 interacting protein 13) (Uncharacterized protein At2g20310) Enhanced susceptibility to Pseudomonas syringae carrying avrRpm1. Susceptible to Pseudomonas syringae-M. Grant-2005 47936 At2g20310 (RPM1 interacting protein 13) (Uncharacterized protein At2g20310) defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626] locus:2038977; AT2G20310 NA Expressed protein (Os10g0466000 protein),Os10g0466000 protein (Fragment) Q337M3,A0A0P0XV30 Q337M3_ORYSJ,A0A0P0XV30_ORYSJ LOC_Os10g32850 Os10g0466000 OSNPB_100466000,Os10g0466000 OSNPB_100466000 ENOG411DRXD SUN3,SUN4,AtSUN4 F4I316,F4I8I0,A0A1P8AMQ4 SUN3_ARATH,SUN4_ARATH,A0A1P8AMQ4_ARATH SUN domain-containing protein 3 (AtSUN3),SUN domain-containing protein 4 (AtSUN4),Galactose-binding protein DISRUPTION PHENOTYPE: No visible phenotype. Embryo lethal when associated with disruption mutants SUN4 and SUN5. {ECO:0000269|PubMed:25217773}.,DISRUPTION PHENOTYPE: No visible phenotype. Embryo lethal when associated with disruption mutants SUN3 and SUN5. {ECO:0000269|PubMed:25217773}. FUNCTION: Encodes a member of the mid-SUN subfamily of SUN-domain proteins that is localized to both the nuclear envelope and the ER. It is involved in early seed development and nuclear morphology. [TAIR]. 74184,67272,70291 SUN domain-containing protein 3 (AtSUN3),SUN domain-containing protein 4 (AtSUN4),Galactose-binding protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; protein self-association [GO:0043621],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nuclear envelope [GO:0005635]; protein self-association [GO:0043621]; nucleus organization [GO:0006997],integral component of membrane [GO:0016021] locus:504956296;,locus:2825334; AT1G22882,AT1G71360 Sad1 / UNC-like C-terminal Os01g0876400 protein (Fragment),Membrane protein CH1-like (Os01g0876400 protein) (cDNA clone:J023148N24, full insert sequence) (cDNA clone:J033060D18, full insert sequence) Q0JH95,Q8LR16,A0A0P0VB21 Q0JH95_ORYSJ,Q8LR16_ORYSJ,A0A0P0VB21_ORYSJ Os01g0876400 Os01g0876400 OSNPB_010876400,P0698A10.35-1 Os01g0876400 OsJ_04271 OSNPB_010876400,Os01g0876400 OSNPB_010876400 ENOG411DRXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RFC-E_C NA NA NA NA NA NA NA ENOG411DRXJ Q681W7 Q681W7_ARATH SEC-C motif protein (Uncharacterized protein At3g04950) 25610 SEC-C motif protein (Uncharacterized protein At3g04950) locus:2114794; AT3G04950 SEC-C motif Os06g0298500 protein Q5ZA53 Q5ZA53_ORYSJ Os06g0298500 Os06g0298500 OsJ_21059 OSNPB_060298500 P0501G08.4 ENOG411DRXK HCS1,HCS2 Q9SL92,F4I4W2,A0A1P8ANC7,Q8S4V4,A0A1P8B1A6,A0A1P8B1A4,A0A1P8AND5,F4I4W1 HCS1_ARATH,HCS2_ARATH,A0A1P8ANC7_ARATH,Q8S4V4_ARATH,A0A1P8B1A6_ARATH,A0A1P8B1A4_ARATH,A0A1P8AND5_ARATH,F4I4W1_ARATH Biotin--protein ligase 1, chloroplastic (EC 6.3.4.-) (Holocarboxylase synthetase 1) [Includes: Biotin--[methylcrotonoyl-CoA-carboxylase] ligase (EC 6.3.4.11); Biotin--[acetyl-CoA-carboxylase] ligase (EC 6.3.4.15)],Biotin--protein ligase 2 (EC 6.3.4.-) (Holocarboxylase synthetase 2),Holocarboxylase synthetase 2,Holocarboxylase synthetase 2 (Holocarboxylase synthetase hcs2.e),Holocarboxylase synthase 1 DISRUPTION PHENOTYPE: Embryonic lethality when homozygous due to aborted ovules that had not been fertilized. {ECO:0000269|PubMed:18156294}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18156294}. Female gametophyte defective; Embryo defective-C. Alban-2008 FUNCTION: Plays a major role in biotin-dependent carboxylase biotinylation. Catalyzes the addition of biotin to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase and can also biotinylate methylcrotonyl-CoA carboxylase. Is responsible for most, if not all, biotin--protein ligase activity in Arabidopsis. Is essential for plant viability and required for ovule development. {ECO:0000269|PubMed:18156294, ECO:0000269|PubMed:9173880, ECO:0000269|PubMed:9874227}.,FUNCTION: Seems to have no or limited implication in biotin-dependent carboxylase biotinylation in planta. {ECO:0000269|PubMed:18156294}. MISCELLANEOUS: The alternative splicing of the 5'UTR of HCS1 mRNA controls the dual targeting of HCS1 protein through alternative use of distinct initiation codons. A small ORF (uORF24) located in the HCS1 mRNA 5'UTR is essential for the AUG choice. The presence of uORF24 favors the synthesis of a short protein form initiated at the second AUG, which consequently localizes in the cytosol. In the absence of uORF24, the translation initiation begins at the first AUG, allowing the production of a HCS1 protein headed by a transit peptide (PubMed:18156294). {ECO:0000305|PubMed:18156294}. ARA:AT2G25710-MONOMER;MetaCyc:AT2G25710-MONOMER; R-ATH-196780; 6.3.4.-; 6.3.4.11; 6.3.4.15,6.3.4.- 41219,37152,33080,24331,34495,33138,39129,32639 Biotin--protein ligase 1, chloroplastic (EC 6.3.4.-) (Holocarboxylase synthetase 1) [Includes: Biotin--[methylcrotonoyl-CoA-carboxylase] ligase (EC 6.3.4.11); Biotin--[acetyl-CoA-carboxylase] ligase (EC 6.3.4.15)],Biotin--protein ligase 2 (EC 6.3.4.-) (Holocarboxylase synthetase 2),Holocarboxylase synthetase 2,Holocarboxylase synthetase 2 (Holocarboxylase synthetase hcs2.e),Holocarboxylase synthase 1 chloroplast [GO:0009507]; cytosol [GO:0005829]; plastid [GO:0009536]; ATP binding [GO:0005524]; biotin-[acetyl-CoA-carboxylase] ligase activity [GO:0004077]; biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity [GO:0004078]; biotin carboxyl carrier protein biosynthetic process [GO:0042966]; cellular protein modification process [GO:0006464],cytoplasm [GO:0005737]; ligase activity [GO:0016874]; cellular protein modification process [GO:0006464],biotin-[acetyl-CoA-carboxylase] ligase activity [GO:0004077]; cellular protein modification process [GO:0006464] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, siliques and seeds. {ECO:0000269|PubMed:11784724, ECO:0000269|PubMed:18156294}.,TISSUE SPECIFICITY: Highly expressed in seeds. Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:11784724}. locus:2050291;,locus:2029642; AT2G25710,AT1G37150 Holocarboxylase synthetase Os02g0167000 protein A0A0P0VFA8 A0A0P0VFA8_ORYSJ Os02g0167000 OSNPB_020167000 ENOG411DRXH FTSZ1 Q42545 FTSZ1_ARATH Cell division protein FtsZ homolog 1, chloroplastic (AtFtsZ1) (AtFtsZ1-1) (Chloroplast FtsZ) (CpFtsZ) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 10) (Protein PLASTID MOVEMENT IMPAIRED4) DISRUPTION PHENOTYPE: Highly heterogeneous chloroplast population with giant chloroplasts and some smaller. Impaired chloroplast division, some green cells with one single big chloroplast. Abnormal thylakoids. {ECO:0000269|PubMed:17468127, ECO:0000269|PubMed:17725544}. Few, large chloroplasts-K. Osteryoung-2007 FUNCTION: Exhibits GTPase activity. Component of the plastid division machinery that forms a contractile ring at the division site. Required for plastid division in a dose-dependent manner. Involved in blue light-induced chloroplast movements. May regulate thylakoid development. {ECO:0000269|PubMed:10213777, ECO:0000269|PubMed:11115884, ECO:0000269|PubMed:11743110, ECO:0000269|PubMed:16113226, ECO:0000269|PubMed:17468127, ECO:0000269|PubMed:17725544, ECO:0000269|PubMed:19925792, ECO:0000269|PubMed:20421292, ECO:0000269|PubMed:9836740}. 45565 Cell division protein FtsZ homolog 1, chloroplastic (AtFtsZ1) (AtFtsZ1-1) (Chloroplast FtsZ) (CpFtsZ) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 10) (Protein PLASTID MOVEMENT IMPAIRED4) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; identical protein binding [GO:0042802]; protein self-association [GO:0043621]; cell cycle [GO:0007049]; chloroplast fission [GO:0010020]; chloroplast organization [GO:0009658]; chloroplast relocation [GO:0009902]; microtubule-based process [GO:0007017]; plastid fission [GO:0043572]; response to blue light [GO:0009637] TISSUE SPECIFICITY: In pollen grain, restricted to plastids of vegetative cells. Also present in pollen tubes plastids. {ECO:0000269|PubMed:20195657}. locus:2161610; AT5G55280 Cell division protein ftsZ Os04g0665400 protein (cDNA clone:001-204-A11, full insert sequence),Os04g0665400 protein (Fragment) B7EYF6,A0A0P0WG08 B7EYF6_ORYSJ,A0A0P0WG08_ORYSJ Os04g0665400 OsJ_16530 OSNPB_040665400,Os04g0665400 OSNPB_040665400 ENOG411DRXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBP domain Squamosa promoter-binding-like protein 1 Q9LGU7 SPL1_ORYSJ SPL1 Os01g0292900 LOC_Os01g18850 OsJ_01398 P0706B05.40 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. ENOG411DRXN Q9SR15,F4J4T3 SYWC_ARATH,F4J4T3_ARATH Tryptophan--tRNA ligase, cytoplasmic (EC 6.1.1.2) (Tryptophanyl-tRNA synthetase) (TrpRS),Nucleotidylyl transferase superfamily protein ARA:AT3G04600-MONOMER; 6.1.1.2 45754,45767 Tryptophan--tRNA ligase, cytoplasmic (EC 6.1.1.2) (Tryptophanyl-tRNA synthetase) (TrpRS),Nucleotidylyl transferase superfamily protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; tryptophan-tRNA ligase activity [GO:0004830]; tryptophanyl-tRNA aminoacylation [GO:0006436],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; transferase activity [GO:0016740]; tryptophan-tRNA ligase activity [GO:0004830]; tryptophanyl-tRNA aminoacylation [GO:0006436] locus:2084993; AT3G04600 Tryptophanyl-tRNA synthetase Os12g0540900 protein (Tryptophanyl-tRNA synthetase, putative, expressed),Os12g0540900 protein (Fragment),Os07g0278400 protein Q2QP62,A0A0P0YB25,A0A0P0X554 Q2QP62_ORYSJ,A0A0P0YB25_ORYSJ,A0A0P0X554_ORYSJ LOC_Os12g35570 Os12g0540900 OSNPB_120540900,Os12g0540900 OSNPB_120540900,Os07g0278400 OSNPB_070278400 ENOG411DRXM FTSH10,FTSH3 Q8VZI8,Q84WU8 FTSHA_ARATH,FTSH3_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial (AtFTSH10) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 3, mitochondrial (AtFTSH3) (EC 3.4.24.-) FUNCTION: Probable ATP-dependent zinc metallopeptidase. Involved in the assembly and/or stability of the complexes I and V of the mitochondrial oxidative phosphorylation system. {ECO:0000269|Ref.9}.,FUNCTION: Probable ATP-dependent zinc metallopeptidase. Involved in the assembly and/or stability of the complexes I and V of the mitochondrial oxidative phosphorylation system. {ECO:0000269|Ref.10}. 3.4.24.B20; 3.4.24.- 89555,89353 ATP-dependent zinc metalloprotease FTSH 10, mitochondrial (AtFTSH10) (EC 3.4.24.-),ATP-dependent zinc metalloprotease FTSH 3, mitochondrial (AtFTSH3) (EC 3.4.24.-) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ATP binding [GO:0005524]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270]; response to cytokinin [GO:0009735] locus:2025052;,locus:2066128; AT1G07510,AT2G29080 ATP-dependent zinc metalloprotease FTSH NA NA NA NA NA NA NA ENOG411E943 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Carboxypeptidase (EC 3.4.16.-) Q9FP87 Q9FP87_ORYSJ Os01g0629600 OSJNBb0035I14.2 OSNPB_010629600 P0688A04.39 ENOG411E46P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) AT-hook motif nuclear-localized protein Q941Y9 Q941Y9_ORYSJ Os01g0953801 OsJ_04794 OSNPB_010953801 P0431G06.28 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000256|PIRNR:PIRNR016021}. ENOG411EAK2 UPS4 Q9ZQ88 UPS4_ARATH Ureide permease 4 (AtUPS4) FUNCTION: Proton-coupled transporter that transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds. {ECO:0000250|UniProtKB:Q9ZPR7}. 43203 Ureide permease 4 (AtUPS4) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; nitrogen compound transport [GO:0071705] TISSUE SPECIFICITY: Expressed in developing seedlings, flower filaments and stigma, and the top and bottom parts of carpels in siliques. {ECO:0000269|PubMed:16738859}. locus:2063851; AT2G03520 ureide permease 4 NA NA NA NA NA NA NA ENOG411EAK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-V NA NA NA NA NA NA NA ENOG411EAK0 CHX9 Q9FFB7 CHX9_ARATH Cation/H(+) antiporter 9 (Protein CATION/H+ EXCHANGER 9) (AtCHX9) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 89060 Cation/H(+) antiporter 9 (Protein CATION/H+ EXCHANGER 9) (AtCHX9) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] locus:2172646; AT5G22910 Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411EAK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os04g0684800 protein (Fragment) Q0J8W1 Q0J8W1_ORYSJ Os04g0684800 Os04g0684800 OSNPB_040684800 ENOG411EAK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411EAK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARM Os11g0549400 protein,Os09g0536200 protein,Os08g0548500 protein (Putative armadillo repeat containing protein) (cDNA clone:J023075G04, full insert sequence) A3CC72,Q69JY9,Q6YT02 A3CC72_ORYSJ,Q69JY9_ORYSJ,Q6YT02_ORYSJ Os11g0549400 OsJ_34206 OSNPB_110549400,Os09g0536200 OsJ_30146 OSNPB_090536200 P0569E11.18,Os08g0548500 Os08g0548500 OJ1112_E06.21 OsJ_28188 OSNPB_080548500 P0544G09.37 ENOG411EAK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family NA NA NA NA NA NA NA ENOG411EAK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50S ribosome-binding GTPase NA NA NA NA NA NA NA ENOG411EAKC Q8H0W9 CAP17_ARATH Putative clathrin assembly protein At5g10410 38742 Putative clathrin assembly protein At5g10410 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; phospholipid binding [GO:0005543]; endocytosis [GO:0006897] locus:2142409; AT5G10410 ANTH domain NA NA NA NA NA NA NA ENOG411EAKB EPS1 Q9FH97 EPS1_ARATH Protein ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1 (EC 2.3.1.-) DISRUPTION PHENOTYPE: Hypersusceptiblity to both virulent and avirulent strains of the bacterial pathogen P.syringae associated with impaired pathogen-mediated induction of salicylic acid (SA) and reduced pathogenesis-related (PR) genes induction. These phenotypes are reversed by SA treatment. In the cv. No-0 but not the cv. Columbia background, defects in SA accumulation or signaling enhances resistance to necrotrophic pathogens such as the fungi B.cinerea and A.brassicicola, leading to small necrotic spots and minor chlorosis, as well as reduced fungal growth. {ECO:0000269|PubMed:19036031}. Enhanced susceptibility to both virulent and non-virulent strains of Pseudomonas. Low SA levels; Susceptible to virulent and avirulent bacteria-Z. Chen-2008 FUNCTION: Required for pathogen-induced salicylic acid (SA) accumulation and SA-mediated resistance to virulent and avirulent pathogens (e.g. P.syringae). {ECO:0000269|PubMed:19036031}. ARA:AT5G67160-MONOMER; 2.3.1.- 48636 Protein ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1 (EC 2.3.1.-) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; defense response [GO:0006952]; regulation of defense response to bacterium [GO:1900424]; regulation of defense response to fungus [GO:1900150]; response to bacterium [GO:0009617]; response to jasmonic acid [GO:0009753]; salicylic acid biosynthetic process [GO:0009697] locus:2155573; AT5G67160 Transferase family NA NA NA NA NA NA NA ENOG411EAKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os01g0520260 protein Q8RZL9 Q8RZL9_ORYSJ Os01g0520260 B1003B09.40 B1168H06.34 OsJ_02016 OSNPB_010520260 ENOG411EAKG Q9LTZ0,A0A1I9LNU6 PLY11_ARATH,A0A1I9LNU6_ARATH Putative pectate lyase 11 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. ARA:AT3G27400-MONOMER; 4.2.2.2 45985,46575 Putative pectate lyase 11 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490]; response to nematode [GO:0009624],metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2086656; AT3G27400 Amb_all NA NA NA NA NA NA NA ENOG411EAKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os10g0571900 protein (Fragment) A0A0N7KS91 A0A0N7KS91_ORYSJ Os10g0571900 OSNPB_100571900 ENOG411EAKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411EAKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BT1 family NA NA NA NA NA NA NA ENOG411EAKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EAKI CYP81G1 Q8GZ20 Q8GZ20_ARATH At5g67310 (Cytochrome P450, family 81, subfamily G, polypeptide 1) (Putative cytochrome P450) ARA:AT5G67310-MONOMER; 57495 At5g67310 (Cytochrome P450, family 81, subfamily G, polypeptide 1) (Putative cytochrome P450) membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; defense response to other organism [GO:0098542]; indole glucosinolate metabolic process [GO:0042343]; secondary metabolite biosynthetic process [GO:0044550] locus:2158222; AT5G67310 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411EAKH S-ACP-DES4,S-ACP-DES2 Q9M880,Q9M881,A0A178V7P2,A0A178VGR6,A0A1I9LTN9 STAD4_ARATH,STAD2_ARATH,A0A178V7P2_ARATH,A0A178VGR6_ARATH,A0A1I9LTN9_ARATH Stearoyl-[acyl-carrier-protein] 9-desaturase 4, chloroplastic (Stearoyl-ACP desaturase 4) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 4),Stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic (Stearoyl-ACP desaturase 2) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 2),Plant stearoyl-acyl-carrier desaturase family protein,Plant stearoyl-acyl-carrier-protein desaturase family protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17072561}.,DISRUPTION PHENOTYPE: Reduced omega-7 fatty acids accumulation in the endosperm. The endosperm oil of double mutant aad2-3 aad3-3 lacks omega-7 fatty acids. {ECO:0000269|PubMed:27681170}. FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. {ECO:0000269|PubMed:17072561}.,FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain (By similarity). Exhibits delta-9 palmitoyl-[acyl-carrier-protein] desaturase (PAD) activity. Involved in omega-7 monounsaturated fatty acid biosynthesis, especially in the endosperm oil (PubMed:27681170). {ECO:0000250|UniProtKB:P22337, ECO:0000269|PubMed:27681170}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT3G02620-MONOMER;,ARA:AT3G02610-MONOMER; 1.14.19.2; 1.14.19.2 46156,46950,47210,46520,37819 Stearoyl-[acyl-carrier-protein] 9-desaturase 4, chloroplastic (Stearoyl-ACP desaturase 4) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 4),Stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic (Stearoyl-ACP desaturase 2) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 2),Plant stearoyl-acyl-carrier desaturase family protein,Plant stearoyl-acyl-carrier-protein desaturase family protein chloroplast [GO:0009507]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-[acp] desaturase activity [GO:0102786]; fatty acid biosynthetic process [GO:0006633],chloroplast [GO:0009507]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-[acp] desaturase activity [GO:0102786]; fatty acid homeostasis [GO:0055089]; regulation of endosperm development [GO:2000014]; unsaturated fatty acid biosynthetic process [GO:0006636],acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; fatty acid metabolic process [GO:0006631] DEVELOPMENTAL STAGE: Accumulates in maturing endosperm. {ECO:0000269|PubMed:27681170}. TISSUE SPECIFICITY: Preferentially expressed in roots. {ECO:0000269|PubMed:17072561}.,TISSUE SPECIFICITY: Preferentially expressed in roots and flowers. {ECO:0000269|PubMed:17072561}. locus:2076959; AT3G02620,AT3G02610 Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain NA NA NA NA NA NA NA ENOG411EAKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kinesin-associated protein (KAP) NA NA NA NA NA NA NA ENOG411EAKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-V NA NA NA NA NA NA NA ENOG411EAKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAKQ Q9FNG3 Y5645_ARATH Uncharacterized protein At5g06450 23215 Uncharacterized protein At5g06450 cytoplasm [GO:0005737]; nucleus [GO:0005634]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676] locus:2164255; AT5G06450 NA NA NA NA NA NA NA NA ENOG411EAKP Q9LRL5,Q84MB1,A0A1P8AZJ0,F4IFF4,A0A1I9LSP4,A0A1P8BCV7 Q9LRL5_ARATH,Q84MB1_ARATH,A0A1P8AZJ0_ARATH,F4IFF4_ARATH,A0A1I9LSP4_ARATH,A0A1P8BCV7_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein floral nectary-specific protein-like),At5g38020 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (SAMT-like protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ARA:AT3G21950-MONOMER;,ARA:AT5G38020-MONOMER; 42011,41642,28759,42771,45669,37541 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein floral nectary-specific protein-like),At5g38020 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (SAMT-like protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168]; response to cadmium ion [GO:0046686],methyltransferase activity [GO:0008168]; fatty acid biosynthetic process [GO:0006633],methyltransferase activity [GO:0008168],membrane [GO:0016020]; methyltransferase activity [GO:0008168]; fatty acid biosynthetic process [GO:0006633] locus:2095572;,locus:2144466;,locus:2053458; AT3G21950,AT5G38020,AT2G14060 SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EAKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox NA NA NA NA NA NA NA ENOG411EAKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os02g0113200 protein (Putative Cytochrome P450),Os07g0465400 protein (Putative cytochrome P450(Obtusifoliol 14-alpha demethylase)),Os07g0567100 protein,Os05g0415800 protein,Os07g0464700 protein (Fragment),Os05g0415900 protein,Os05g0416400 protein Q6ZH24,Q8GTY5,A0A0P0X842,A0A0P0WME8,A0A0P0X5K5,A0A0P0WMH7,A0A0P0WMF4 Q6ZH24_ORYSJ,Q8GTY5_ORYSJ,A0A0P0X842_ORYSJ,A0A0P0WME8_ORYSJ,A0A0P0X5K5_ORYSJ,A0A0P0WMH7_ORYSJ,A0A0P0WMF4_ORYSJ Os02g0113200 OJ1399_H05.18 OsJ_05083 OSNPB_020113200,P0473C09.118 Os07g0465400 P0404G11.106 OSNPB_070465400,Os07g0567100 OSNPB_070567100,Os05g0415800 OSNPB_050415800,Os07g0464700 OSNPB_070464700,Os05g0415900 OSNPB_050415900,Os05g0416400 OSNPB_050416400 ENOG411EAKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OMPdecase NA NA NA NA NA NA NA ENOG411E2B2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0475000 protein (Fragment) Q0D6I9 Q0D6I9_ORYSJ Os07g0475000 Os07g0475000 OSNPB_070475000 ENOG411E2B9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0196500 protein Q69YA3 Q69YA3_ORYSJ P0528E04.25 Os06g0196500 OSNPB_060196500 ENOG411E2B8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os02g0780200 protein (Putative subtilisin-like proteinase) (cDNA clone:J023058P11, full insert sequence),Os02g0778900 protein (Subtilisin-like proteinase-like) (cDNA, clone: J065219E22, full insert sequence),Os02g0779000 protein Q6K7F4,Q6K7G6,A0A0P0VQA5 Q6K7F4_ORYSJ,Q6K7G6_ORYSJ,A0A0P0VQA5_ORYSJ Os02g0780200 OJ1293_A01.34 OSNPB_020780200,Os02g0778900 Os02g0778900 OJ1293_A01.9 OsJ_08596 OSNPB_020778900,Os02g0779000 OSNPB_020779000 ENOG411E2BZ EDR4 Q9FHK4 EDR4_ARATH Protein ENHANCED DISEASE RESISTANCE 4 DISRUPTION PHENOTYPE: Mild, hypersensitive response-like lesions under long-day conditions at late growth stages. Enhanced salicylic acid (SA) accumulation and SA signaling-dependent disease resistance to Golovinomyces cichoracearum UCSC1 associated with enhanced H(2)O(2) accumulation and callose deposition in the infection site as well as higher expression of defense-related genes (PRs). Reduced endocytosis rates. {ECO:0000269|PubMed:25747881}. FUNCTION: Plays a negative role in salicylic acid (SA)-mediated resistance to powdery mildew (e.g. Golovinomyces cichoracearum). May modulate plant immunity by regulating the relocation of EDR1 by interacting with CHC2 and modulating endocytosis. {ECO:0000269|PubMed:25747881}. 68351 Protein ENHANCED DISEASE RESISTANCE 4 endosome [GO:0005768]; plasma membrane [GO:0005886]; defense response [GO:0006952]; endocytosis [GO:0006897]; regulation of defense response to fungus [GO:1900150]; regulation of endocytosis [GO:0030100]; response to fungus [GO:0009620]; salicylic acid mediated signaling pathway [GO:0009863] TISSUE SPECIFICITY: Expressed in stems and rosette leaves, and weakly in inflorescences. Not detected in roots. {ECO:0000269|PubMed:15618630}. locus:2156799; AT5G05190 Protein of unknown function (DUF3133) Os11g0117700 protein (Fragment),Os02g0464500 protein A0A0P0XY54,A0A0P0VIR6 A0A0P0XY54_ORYSJ,A0A0P0VIR6_ORYSJ Os11g0117700 OSNPB_110117700,Os02g0464500 OSNPB_020464500 ENOG411E2BY Q9LTH7,Q9LSW6,Q9LTH8,Q9LSW7 ACH12_ARATH,ACH10_ARATH,ACH11_ARATH,ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 10 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 11 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 9 (EC 1.14.-.-) ARA:AT5G59540-MONOMER;,ARA:AT5G43450-MONOMER;,ARA:AT5G59530-MONOMER; 1.14.-.- 41539,40875,41275,40860 1-aminocyclopropane-1-carboxylate oxidase homolog 12 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 10 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 11 (EC 1.14.-.-),1-aminocyclopropane-1-carboxylate oxidase homolog 9 (EC 1.14.-.-) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491],1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; metal ion binding [GO:0046872] locus:2148303;,locus:2176466;,locus:2148403;,locus:2176456; AT5G59540,AT5G43450,AT5G59530,AT5G43440 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E2BC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 NA NA NA NA NA NA NA ENOG411EB3D DIR13,DIR12,DIR14 Q9T017,O82498,Q9T019 DIR13_ARATH,DIR12_ARATH,DIR14_ARATH Dirigent protein 13 (AtDIR13),Dirigent protein 12 (AtDIR12),Dirigent protein 14 (AtDIR14) DISRUPTION PHENOTYPE: Lacks seed-specific neolignans such as 3-{4-[2-hydroxy-2-(4-hexosyloxy- 3-methoxyphenyl)-1-hydroxymethylethoxy]-3,5-di-methoxyphenyl}acryloylcholine. {ECO:0000269|PubMed:20023150}. FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}.,FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism (By similarity). Required for seed accumulation of neolignans. {ECO:0000250, ECO:0000269|PubMed:20023150}. 20939,20832,20574 Dirigent protein 13 (AtDIR13),Dirigent protein 12 (AtDIR12),Dirigent protein 14 (AtDIR14) apoplast [GO:0048046]; isomerase activity [GO:0016853],apoplast [GO:0048046]; isomerase activity [GO:0016853]; lignan biosynthetic process [GO:0009807] DEVELOPMENTAL STAGE: In flowers, expressed in the vasculature of sepals, petals, stamen filaments, and the gynoecium stylar region. In siliques, observed in the stigmatic region and epidermal layers. {ECO:0000269|PubMed:22854967}. TISSUE SPECIFICITY: Expressed in root vasculature and meristems, cotyledons, flowers, siliques, and leaf trichomes. Localized in the interfascicular/vascular cambia and developing xylem. {ECO:0000269|PubMed:22854967}.,TISSUE SPECIFICITY: Seed coat specific expression. {ECO:0000269|PubMed:20023150, ECO:0000269|PubMed:23115000}. locus:2136128;,locus:2136118;,locus:2136143; AT4G11190,AT4G11180,AT4G11210 Disease resistance-responsive NA NA NA NA NA NA NA ENOG411E2BB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase Os07g0121200 protein,Os02g0615800 protein,Os02g0610000 protein,Os02g0615800 protein (Fragment) A3BG45,Q6K7X0,Q0DZM7,A0A0P0VM23 A3BG45_ORYSJ,Q6K7X0_ORYSJ,Q0DZM7_ORYSJ,A0A0P0VM23_ORYSJ Os07g0121200 OsJ_22922 OSNPB_070121200,Os02g0615800 OsJ_07528 OSNPB_020615800 P0407A09.33,Os02g0610000 Os02g0610000 OsJ_07483 OSNPB_020610000,Os02g0615800 OSNPB_020615800 ENOG411E2BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein NA NA NA NA NA NA NA ENOG411E2BH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD(P)H-dependent oxidoreductase 1-like NA NA NA NA NA NA NA ENOG411DQZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chlorophyll(ide) b reductase NOL chloroplastic-like Chlorophyll(ide) b reductase NOL, chloroplastic (EC 1.1.1.294) (Protein NON-YELLOW COLORING 1-LIKE) (OsNOL) (Protein NYC1-LIKE) (Short-chain dehydrogenase/reductase NOL) Q84ST4 NOL_ORYSJ NOL Os03g0654600 LOC_Os03g45194 OsJ_11943 OSJNBa0092N01.25 OSJNBb0023J24.13 DISRUPTION PHENOTYPE: Stay-green phenotype during senescence. Grana stacks fused into large stable stacks during semescence. {ECO:0000269|PubMed:18778405}. FUNCTION: Required for chlorophyll b degradation. MISCELLANEOUS: Chlorophyll b reductase activity detected in vitro with a recombinant protein produced in a heterologous system. ENOG411DQZV SUVR5 O64827,A0A1P8AZG6,F4IMM1 SUVR5_ARATH,A0A1P8AZG6_ARATH,F4IMM1_ARATH Histone-lysine N-methyltransferase SUVR5 (EC 2.1.1.43) (C2H2 zinc finger-SET histone methyltransferase) (Protein C2H2 SET) (Protein SET DOMAIN GROUP 6) (Suppressor of variegation 3-9-related protein 5) (Su(var)3-9-related protein 5),Histone-lysine N-methyltransferase SUVR5 DISRUPTION PHENOTYPE: Displays reduced dimethylation of lysine 9 and lysine 27 of histone H3 and hyperacetylation of histone H4 within the FLC locus and shows a moderate delayed flowering (PubMed:17224141). Delayed flowering (PubMed:23071452). {ECO:0000269|PubMed:17224141, ECO:0000269|PubMed:23071452}. FUNCTION: Histone methyltransferase that functions together with its binding partner LDL1/SWP1 as one of the regulators of flower timing in Arabidopsis (PubMed:17224141). Mediates H3K9me2 deposition and regulates gene expression in a DNA methylation-independent manner. Binds DNA through its zinc fingers and represses the expression of a subset of stimulus response genes. May represent a novel mechanism for plants to regulate their chromatin and transcriptional state, which may allow for the adaptability and modulation necessary to rapidly respond to environment or developmental cues (PubMed:23071452). {ECO:0000269|PubMed:17224141, ECO:0000269|PubMed:23071452}. 2.1.1.43 155767,148478,154917 Histone-lysine N-methyltransferase SUVR5 (EC 2.1.1.43) (C2H2 zinc finger-SET histone methyltransferase) (Protein C2H2 SET) (Protein SET DOMAIN GROUP 6) (Suppressor of variegation 3-9-related protein 5) (Su(var)3-9-related protein 5),Histone-lysine N-methyltransferase SUVR5 chromosome [GO:0005694]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; chromatin remodeling [GO:0006338]; chromatin silencing [GO:0006342]; histone lysine methylation [GO:0034968]; regulation of histone H3-K9 dimethylation [GO:1900109],nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270],chromosome [GO:0005694]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2049047; AT2G23740 histone-lysine N-methyltransferase SUVR5-like Os02g0708600 protein (Fragment) Q0DY89 Q0DY89_ORYSJ Os02g0708600 Os02g0708600 OSNPB_020708600 ENOG411DQZU DYW7 Q9FXH1 PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720 (Protein DYW7) 100815 Pentatricopeptide repeat-containing protein At1g19720 (Protein DYW7) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2013079; AT1G19720 Pentatricopeptide repeat-containing protein Os03g0807400 protein (Fragment) A0A0P0W4J2 A0A0P0W4J2_ORYSJ Os03g0807400 OSNPB_030807400 ENOG411DQZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Os05g0583000 protein (Putative WRKY17) (WRKY transcription factor 8),DNA-binding protein WRKY2-like (Os01g0626400 protein) (WRKY transcription factor) (WRKY transcription factor 11) (WRKY16) (cDNA clone:002-150-E09, full insert sequence) Q75HY3,Q9FE35 Q75HY3_ORYSJ,Q9FE35_ORYSJ WRKY8 Os05g0583000 OJ1651_G11.15 OsJ_29859 OSJNBb0035N21.12 OSNPB_050583000,WRKY11 Os01g0626400 OsJ_02674 OSNPB_010626400 P0006C01.25 P0688A04.3 ENOG411DQZS MRN17.8 Q0WQ50,A0A1P8AXQ7,Q0WRU5,Q9FPD6,A0A1P8AM93,A0A1P8AM88,A0A1P8AM85,F4INZ4,F4JF07 Q0WQ50_ARATH,A0A1P8AXQ7_ARATH,Q0WRU5_ARATH,Q9FPD6_ARATH,A0A1P8AM93_ARATH,A0A1P8AM88_ARATH,A0A1P8AM85_ARATH,F4INZ4_ARATH,F4JF07_ARATH Eukaryotic aspartyl protease family protein (Putative protease),Eukaryotic aspartyl protease family protein,Eukaryotic aspartyl protease family protein (Protease-like protein),Eukaryotic aspartyl protease family protein (Uncharacterized protein At1g08210) 54119,47452,52338,52988,55950,58590,56947,54698,47880 Eukaryotic aspartyl protease family protein (Putative protease),Eukaryotic aspartyl protease family protein,Eukaryotic aspartyl protease family protein (Protease-like protein),Eukaryotic aspartyl protease family protein (Uncharacterized protein At1g08210) integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],anchored component of membrane [GO:0031225]; plant-type cell wall [GO:0009505]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190],integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2172661;,locus:2200023;,locus:2040545;,locus:2101586; AT2G36670,AT5G22850,AT1G08210,AT3G42550 aspartic proteinase-like protein Os01g0777200 protein (Putative aspartic proteinase nepenthesin II) Q5ZAZ8 Q5ZAZ8_ORYSJ P0413G02.28 Os01g0777200 OSNPB_010777200 ENOG411DQZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411DQZQ Q9M153,A0A1P8B7L1,A0A1P8B7L0 GDL61_ARATH,A0A1P8B7L1_ARATH,A0A1P8B7L0_ARATH GDSL esterase/lipase At4g01130 (EC 3.1.1.-) (Extracellular lipase At4g01130),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT4G01130-MONOMER; 3.1.1.- 42013,36906,32591 GDSL esterase/lipase At4g01130 (EC 3.1.1.-) (Extracellular lipase At4g01130),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2124993; AT4G01130 GDSL esterase lipase Os06g0160200 protein (Putative lanatoside 15'-O-acetylesterase) (cDNA clone:J033044K03, full insert sequence) Q9XIY6 Q9XIY6_ORYSJ Os06g0160200 Os06g0160200 OsJ_20209 OSNPB_060160200 P0681F10.5 ENOG411DQZP MTPC3 Q9M2P2 MTPC3_ARATH Putative metal tolerance protein C3 (AtMTPc3) (AtMTP8) FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. 46241 Putative metal tolerance protein C3 (AtMTPc3) (AtMTP8) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; root hair [GO:0035618]; manganese ion transmembrane transporter activity [GO:0005384]; manganese ion transmembrane transport [GO:0071421] locus:2095873; AT3G58060 metal tolerance protein Metal tolerance protein 3 (OsMTP3),Metal tolerance protein 4 (OsMTP4),Os02g0775100 protein (Fragment) Q6Z7K5,Q10PP8,A0A0P0VQ28 MTP3_ORYSJ,MTP4_ORYSJ,A0A0P0VQ28_ORYSJ MTP3 Os02g0775100 LOC_Os02g53490 OJ1448_G06.19 OsJ_08570,MTP4 Os03g0226400 LOC_Os03g12530 OsJ_09993 OSJNBa0081P02.21,Os02g0775100 OSNPB_020775100 FUNCTION: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}. ENOG411DQZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0488100 protein (Fragment) A0A0N7KL00 A0A0N7KL00_ORYSJ Os05g0488100 OSNPB_050488100 ENOG411DQZY GATB Q9FV81,F4HYH1 GATB_ARATH,F4HYH1_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_03147, ECO:0000269|PubMed:18441100}.,FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000256|HAMAP-Rule:MF_03147}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03147}. ARA:AT1G48520-MONOMER; 6.3.5.- 60941,53997 Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [GO:0050567]; glutaminyl-tRNAGln biosynthesis via transamidation [GO:0070681]; translation [GO:0006412],chloroplast [GO:0009507]; glutamyl-tRNA(Gln) amidotransferase complex [GO:0030956]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [GO:0050567]; glutaminyl-tRNAGln biosynthesis via transamidation [GO:0070681]; mitochondrial translation [GO:0032543] locus:2198045; AT1G48520 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) (By similarity) Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-),Os11g0544800 protein (Fragment) Q2R2Z0,A0A0P0Y3G3 GATB_ORYSJ,A0A0P0Y3G3_ORYSJ GATB Os11g0544800 LOC_Os11g34210 OsJ_34183,Os11g0544800 OSNPB_110544800 FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_03147}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03147}. ENOG411DQZX CNGC2,DND1 O65718,F4K9S7 CNGC2_ARATH,F4K9S7_ARATH Cyclic nucleotide-gated ion channel 2 (AtCNGC2) (Cyclic nucleotide- and calmodulin-regulated ion channel 2) (Protein DEFENSE NO DEATH 1),Cyclic nucleotide-regulated ion channel family protein Dwarf; Complete loss of hypersensitive response in response to avirulent Pseudomonas syringae-A. Bent-2000 FUNCTION: Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and calcium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Could also transport lithium, cesium and rubium and displays a strong selectivity against sodium. Seems to directly participate in pathogen-induced calcium influx. May function in homeostasis, re-establishing ionic balance after defense action and/or other stimuli. Could mediate the initiation of the developmentally regulated cell death programs. {ECO:0000269|PubMed:10900264, ECO:0000269|PubMed:11506354}. MISCELLANEOUS: Loss-of-function mutations cngc2-1 (dnd1-1) or cncg2-2 results in the loss of the hypersensitive response and leads to a broad spectrum disease resistance. These mutations lead to a specific and dramatic calcium hypersensitivity that results in severe reductions in plant size and seed yield. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 83241,83089 Cyclic nucleotide-gated ion channel 2 (AtCNGC2) (Cyclic nucleotide- and calmodulin-regulated ion channel 2) (Protein DEFENSE NO DEATH 1),Cyclic nucleotide-regulated ion channel family protein integral component of plasma membrane [GO:0005887]; intracellular [GO:0005622]; calcium channel activity [GO:0005262]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; intracellular cAMP activated cation channel activity [GO:0005222]; intracellular cyclic nucleotide activated cation channel activity [GO:0005221]; inward rectifier potassium channel activity [GO:0005242]; calcium ion import [GO:0070509]; defense response [GO:0006952]; nitric oxide mediated signal transduction [GO:0007263]; plant-type hypersensitive response [GO:0009626]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] TISSUE SPECIFICITY: Expressed in the whole plant but only weakly in roots. Strongly expressed in the expanded cotyledons of 14-day-old seedlings and detected later in leaves after the transition to flowering. Also detected in flowers during organ senescence and in the dehiscence zone of siliques. {ECO:0000269|PubMed:11506354}. locus:2180867; AT5G15410 cyclic nucleotide-gated ion channel Os03g0758300 protein Q0DNE3,A0A0P0W3X2 Q0DNE3_ORYSJ,A0A0P0W3X2_ORYSJ Os03g0758300 Os03g0758300 OSNPB_030758300,Os03g0758300 OSNPB_030758300 ENOG411DQZG LACS1 O22898,A0A1P8B2B8,A0A1P8B2A8 LACS1_ARATH,A0A1P8B2B8_ARATH,A0A1P8B2A8_ARATH Long chain acyl-CoA synthetase 1 (EC 6.2.1.3) (Protein ECERIFERUM 8),AMP-dependent synthetase and ligase family protein,Long chain acyl-CoA synthetase DISRUPTION PHENOTYPE: In stem, fewer and flatter wax crystals and disorganized cuticle proper and thinner cuticular layer. Reduced amount of wax in all chemical classes on the stem and leaf, except in the very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). {ECO:0000269|PubMed:19392700, ECO:0000269|PubMed:20237894}. The lacs1-1 lacs2-3 double mutants had a synergistic phenotype compared to either of the single mutants with drastically reduced stem wax and cutin contents increased cuticle permeability and severe male sterile in low humidity. Glossy inflorescence stems-M. Jenks-2009 FUNCTION: Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). {ECO:0000269|PubMed:12228482, ECO:0000269|PubMed:19392700, ECO:0000269|PubMed:20237894}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT2G47240-MONOMER;MetaCyc:AT2G47240-MONOMER; 6.2.1.3 74598,68144,15250 Long chain acyl-CoA synthetase 1 (EC 6.2.1.3) (Protein ECERIFERUM 8),AMP-dependent synthetase and ligase family protein,Long chain acyl-CoA synthetase endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; very long-chain fatty acid-CoA ligase activity [GO:0031957]; cutin biosynthetic process [GO:0010143]; fatty acid metabolic process [GO:0006631]; wax biosynthetic process [GO:0010025],ligase activity [GO:0016874]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Epidermal-specific expression along the entire stem. In cauline leaves, was expressed over the entire leaf surface, most strongly in trichomes and guard cells, but not in mesophyll cells. In flowers, the expression was detected in the stigma and filaments of the stamens, and in the carpel was expressed specifically in ovaries. In roots, was expressed in primary and lateral roots, but not in the root tips. {ECO:0000269|PubMed:19392700, ECO:0000269|PubMed:20237894}. locus:2065195; AT2G47240 long chain acyl-CoA synthetase Os05g0132100 protein,Os05g0132100 protein (Fragment) Q0DL03,A0A0P0WHI7 Q0DL03_ORYSJ,A0A0P0WHI7_ORYSJ Os05g0132100 Os05g0132100 OsJ_17009 OSNPB_050132100,Os05g0132100 OSNPB_050132100 ENOG411DQZF STP5 Q93Y91,A0A1P8ANW3 STP5_ARATH,A0A1P8ANW3_ARATH Sugar transport protein 5 (Hexose transporter 5),Major facilitator superfamily protein FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}. 54368,49667 Sugar transport protein 5 (Hexose transporter 5),Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2009323; AT1G34580 sugar transport protein Sugar transport protein MST1 (Monosaccharide transporter 1) (OsMST1) (Sugar:proton symporter MST1),OSJNBa0006M15.8 protein (OSJNBa0027G07.27 protein) (Os04g0454200 protein) (cDNA clone:J013111I22, full insert sequence),Os04g0452600 protein,Os04g0455200 protein (Fragment),Os04g0452900 protein,Os04g0453050 protein Q0JCR9,Q7X632,A0A0P0WAY2,A0A0P0WB85,A0A0P0WAY5,A0A0P0WB70 MST1_ORYSJ,Q7X632_ORYSJ,A0A0P0WAY2_ORYSJ,A0A0P0WB85_ORYSJ,A0A0P0WAY5_ORYSJ,A0A0P0WB70_ORYSJ MST1 Os04g0452700 LOC_Os04g37980 OsJ_05845 OSJNBa0027G07.3 OSJNBa0027G07.4,Os04g0454200 Os04g0454200 OSJNBa0006M15.8 OSJNBa0027G07.27 OSNPB_040454200,Os04g0452600 OSNPB_040452600,Os04g0455200 OSNPB_040455200,Os04g0452900 OSNPB_040452900,Os04g0453050 OSNPB_040453050 FUNCTION: Mediates active uptake of hexoses by sugar:proton symport. {ECO:0000250|UniProtKB:Q7EZD7}. ENOG411DQZE PXG2,PXG1,PXG3 Q9FLN9,O81270,O22788,F4KBH6 PXG2_ARATH,PXG1_ARATH,PXG3_ARATH,F4KBH6_ARATH Peroxygenase 2 (AtPXG2) (EC 1.11.2.3) (Caleosin-2) (Embryo-specific protein 2) (Putative embryo-specific protein 1 (ATS2)),Peroxygenase 1 (AtPXG1) (EC 1.11.2.3) (Caleosin-1) (Embryo-specific protein 1 (ATS1)),Probable peroxygenase 3 (AtPXG3) (EC 1.11.2.3) (Caleosin-3) (Protein RESPONSIVE TO DESICCATION 20),Caleosin-related family protein DISRUPTION PHENOTYPE: No visible phenotype, but retarded growth during the first 48 hours after germination. {ECO:0000269|PubMed:16961733}.,DISRUPTION PHENOTYPE: Increased drought and salt stress sensitivity. Delayed seed germination and reduced cotyledon opening and greening in presence of abscisic acid. {ECO:0000269|PubMed:20952421, ECO:0000269|PubMed:21673513}. FUNCTION: Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies. May be involved in the interaction between oil bodies and vacuoles during seed germination and in the oxylipin signaling pathways and plant defense responses. Can catalyze sulfoxidation of thiobenzamide, hydroxylation of aniline and epoxidation of oleic acid. {ECO:0000269|PubMed:15678336}.,FUNCTION: Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies. May be involved in the interaction between oil bodies and vacuoles during seed germination and in the oxylipin signaling pathways and plant defense responses. Can catalyze sulfoxidation of thiobenzamide, hydroxylation of aniline, epoxidation of oleic acid or intramolecular oxygen transfer. {ECO:0000269|PubMed:16961733}.,FUNCTION: Probable calcium-binding peroxygenase. May be involved in the degradation of storage lipid in oil bodies, in abiotic stress-related signaling pathway and in drought tolerance through stomatal control under water deficit conditions. {ECO:0000269|PubMed:19467604, ECO:0000269|PubMed:20952421}. MISCELLANEOUS: The N-terminus is facing into the microsomal vesicles. MetaCyc:MONOMER-15999; 1.11.2.3 27876,28038,26600,20227 Peroxygenase 2 (AtPXG2) (EC 1.11.2.3) (Caleosin-2) (Embryo-specific protein 2) (Putative embryo-specific protein 1 (ATS2)),Peroxygenase 1 (AtPXG1) (EC 1.11.2.3) (Caleosin-1) (Embryo-specific protein 1 (ATS1)),Probable peroxygenase 3 (AtPXG3) (EC 1.11.2.3) (Caleosin-3) (Protein RESPONSIVE TO DESICCATION 20),Caleosin-related family protein integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; calcium ion binding [GO:0005509]; heme oxygenase (decyclizing) activity [GO:0004392]; linoleic acid epoxygenase activity [GO:0071614]; monooxygenase activity [GO:0004497]; plant seed peroxidase activity [GO:1990137]; defense response [GO:0006952]; oxylipin biosynthetic process [GO:0031408],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; organelle membrane [GO:0031090]; calcium ion binding [GO:0005509]; heme oxygenase (decyclizing) activity [GO:0004392]; linoleic acid epoxygenase activity [GO:0071614]; monooxygenase activity [GO:0004497]; plant seed peroxidase activity [GO:1990137]; defense response [GO:0006952]; embryo development ending in seed dormancy [GO:0009793]; lipid particle organization [GO:0034389]; oxylipin biosynthetic process [GO:0031408],chloroplast membrane [GO:0031969]; endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231]; monolayer-surrounded lipid storage body [GO:0012511]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; plant seed peroxidase activity [GO:1990137]; (R)-2-hydroxy-alpha-linolenic acid biosynthetic process [GO:1902609]; defense response to fungus [GO:0050832]; oxylipin metabolic process [GO:0031407]; regulation of reactive oxygen species metabolic process [GO:2000377]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to desiccation [GO:0009269]; response to fungus [GO:0009620]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; stomatal movement [GO:0010118],integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509] DEVELOPMENTAL STAGE: Expressed during the early-to-late cotyledon stage of seed maturation. {ECO:0000269|PubMed:10380802, ECO:0000269|PubMed:11197322}.,DEVELOPMENTAL STAGE: Expressed in the first days following fertilization, but not in mature seeds. {ECO:0000269|PubMed:20952421}. TISSUE SPECIFICITY: Expressed in roots, cotyledons, hypocotyls, leaves, shoots, flowers, siliques and dry seeds. {ECO:0000269|PubMed:11197322, ECO:0000269|PubMed:15678336}.,TISSUE SPECIFICITY: Expressed in seeds. Expression restricted to the developing embryo with enhanced expression in both the protoderm and vasculature. Detected in root tip cells throughout development. {ECO:0000269|PubMed:10380802, ECO:0000269|PubMed:11197322}.,TISSUE SPECIFICITY: Expressed in cotyledons, hypocotyls, leaves, shoots, flowers, stems, siliques, hydatodes, trichome bases and guard cells. Not detected in roots, mature brown siliques or mature dry seeds. {ECO:0000269|PubMed:10965948, ECO:0000269|PubMed:11197322, ECO:0000269|PubMed:19467604, ECO:0000269|PubMed:20952421}. locus:2161655;,locus:2116427;,locus:2051129;,locus:1005716867; AT5G55240,AT4G26740,AT2G33380,AT5G29560 Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies. May be involved in the interaction between oil bodies and vacuoles during seed germination and in the oxylipin signaling pathways and plant defense responses. Can catalyze sulfoxidation of thiobenzamide hydroxylation of aniline Peroxygenase (EC 1.11.2.3),Os04g0510900 protein (Fragment),Os08g0256100 protein Q7FAX1,C7J0T2,A0A0P0XDQ5 PXG_ORYSJ,C7J0T2_ORYSJ,A0A0P0XDQ5_ORYSJ PXG Os04g0511200 LOC_Os04g43200 OsJ_15434 OSJNBa0004N05.7,Os04g0510900 Os04g0510900 OSNPB_040510900,Os08g0256100 OSNPB_080256100 FUNCTION: Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies. May be involved in the interaction between oil bodies and vacuoles during seed germination and in the oxylipin signaling pathways and plant defense responses. Can catalyze sulfoxidation of thiobenzamide, hydroxylation of aniline and epoxidation of oleic acid (By similarity). {ECO:0000250}. ENOG411DQZD Q9LSC7 Q9LSC7_ARATH AT3g27090/MOJ10_18 (DCD (Development and Cell Death) domain protein) 33836 AT3g27090/MOJ10_18 (DCD (Development and Cell Death) domain protein) locus:2091965; AT3G27090 DCD B2 protein (Os05g0498700 protein) (Putative B2 protein) Q6L4U7 Q6L4U7_ORYSJ Os05g0498700 Os05g0498700 OJ1057_B02.1 OsJ_19076 OSNPB_050498700 P0010D04.12 ENOG411DQZC emb2726 Q9SZD6,F4JMU5 Q9SZD6_ARATH,F4JMU5_ARATH Elongation factor Ts, mitochondrial (EF-Ts) (EF-TsMt) Embryo defective; Globular-D. Meinke-2002 FUNCTION: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. {ECO:0000256|HAMAP-Rule:MF_03135, ECO:0000256|RuleBase:RU000642}. 103782,76856 Elongation factor Ts, mitochondrial (EF-Ts) (EF-TsMt) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; mRNA binding [GO:0003729]; translation elongation factor activity [GO:0003746]; mitochondrial translational elongation [GO:0070125]; response to cadmium ion [GO:0046686],mitochondrion [GO:0005739]; translation elongation factor activity [GO:0003746] locus:2119946; AT4G29060 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity) Elongation factor Ts, mitochondrial (EF-Ts) (EF-TsMt),Elongation factor Ts (Fragment),Os12g0541500 protein (Fragment),Os12g0541500 protein Q2QP54,A0A0P0YBF5,A0A0P0YAX2,A0A0P0YAX3,A0A0P0YB77 Q2QP54_ORYSJ,A0A0P0YBF5_ORYSJ,A0A0P0YAX2_ORYSJ,A0A0P0YAX3_ORYSJ,A0A0P0YB77_ORYSJ EFTS LOC_Os12g35630 Os12g0541500 OsJ_36392 OSNPB_120541500,Os12g0541500 OSNPB_120541500 FUNCTION: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. {ECO:0000256|HAMAP-Rule:MF_03135, ECO:0000256|RuleBase:RU000642}.,FUNCTION: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. {ECO:0000256|RuleBase:RU000642}. ENOG411DQZB MT-CYB; ,; P42792,P93314 CYB_ARATH,M590_ARATH Cytochrome b (Complex III subunit 3) (Complex III subunit III) (Cytochrome b-c1 complex subunit 3) (Ubiquinol-cytochrome-c reductase complex cytochrome b subunit),Uncharacterized mitochondrial cytochrome b-like protein AtMg00590 (ORF313) FUNCTION: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. {ECO:0000250|UniProtKB:P00163}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07727) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited.; MISCELLANEOUS: Heme 1 (or BL or b562) is low-potential and absorbs at about 562 nm, and heme 2 (or BH or b566) is high-potential and absorbs at about 566 nm. {ECO:0000250}.,MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07718) is demonstrated. ARA:ATMG00220-MONOMER;ARA:MONOMER-8804; 44291,35538 Cytochrome b (Complex III subunit 3) (Complex III subunit III) (Cytochrome b-c1 complex subunit 3) (Ubiquinol-cytochrome-c reductase complex cytochrome b subunit),Uncharacterized mitochondrial cytochrome b-like protein AtMg00590 (ORF313) mitochondrial inner membrane [GO:0005743]; respiratory chain complex III [GO:0045275]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; ubiquinol-cytochrome-c reductase activity [GO:0008121]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122],integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; plasma membrane [GO:0005886]; heme transport [GO:0015886]; oxidation-reduction process [GO:0055114]; respiratory electron transport chain [GO:0022904] locus:2828176;locus:504954542; AT2G07727ATMG00220;,AT2G07718ATMG00590; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity) Cytochrome b (Complex III subunit 3) (Complex III subunit III) (Cytochrome b-c1 complex subunit 3) (Ubiquinol-cytochrome-c reductase complex cytochrome b subunit),Cytochrome b P0C524,Q8HCN3 CYB_ORYSJ,Q8HCN3_ORYSJ MT-CYB COB CYTB MTCYB,cob FUNCTION: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. {ECO:0000250|UniProtKB:P00163}.,FUNCTION: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. {ECO:0000256|RuleBase:RU362117}. MISCELLANEOUS: Heme 1 (or BL or b562) is low-potential and absorbs at about 562 nm, and heme 2 (or BH or b566) is high-potential and absorbs at about 566 nm. {ECO:0000250}. ENOG411DQZA RPI3 Q9S726 RPI3_ARATH Probable ribose-5-phosphate isomerase 3, chloroplastic (EC 5.3.1.6) (Phosphoriboisomerase 3) (Protein EMBRYO DEFECTIVE 3119) Embryo defective; Preglobular-D. Meinke-2011 FUNCTION: Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. {ECO:0000250}. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1. ARA:AT3G04790-MONOMER; R-ATH-71336; 5.3.1.6 29306 Probable ribose-5-phosphate isomerase 3, chloroplastic (EC 5.3.1.6) (Phosphoriboisomerase 3) (Protein EMBRYO DEFECTIVE 3119) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; ribose-5-phosphate isomerase activity [GO:0004751]; defense response to bacterium [GO:0042742]; pentose-phosphate shunt, non-oxidative branch [GO:0009052]; reductive pentose-phosphate cycle [GO:0019253]; response to cytokinin [GO:0009735] locus:2084898; AT3G04790 ribose-5-phosphate Os07g0176900 protein (Putative ribose-5-phosphate isomerase) (cDNA clone:001-034-G01, full insert sequence),Os07g0176900 protein (Fragment) Q6ZEZ2,A0A0P0X334 Q6ZEZ2_ORYSJ,A0A0P0X334_ORYSJ P0534H07.29-1 Os07g0176900 OsJ_23301 OSNPB_070176900,Os07g0176900 OSNPB_070176900 ENOG411DQZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os02g0329800 protein (Putative HGA1) Q6Z7I3 Q6Z7I3_ORYSJ Os02g0329800 Os02g0329800 OJ1521_G01.21 OsJ_06519 OSNPB_020329800 ENOG411DQZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) A0A0P0XS14 A0A0P0XS14_ORYSJ Os10g0107000 OSNPB_100107000 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DQZK ERD3 Q94II3,Q9C6S7,A0A1P8B8K2 PMTL_ARATH,PMTK_ARATH,A0A1P8B8K2_ARATH Probable methyltransferase PMT21 (EC 2.1.1.-) (Protein EARLY-RESPONSIVE TO DEHYDRATION 3),Probable methyltransferase PMT20 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2.1.1.- 68331,68797,56698 Probable methyltransferase PMT21 (EC 2.1.1.-) (Protein EARLY-RESPONSIVE TO DEHYDRATION 3),Probable methyltransferase PMT20 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2134756;,locus:2034522; AT4G19120,AT1G31850 methyltransferase Os04g0218400 protein A0A0P0W7Y1 A0A0P0W7Y1_ORYSJ Os04g0218400 OSNPB_040218400 ENOG411DQZJ VH1-interacting kinase Q9XI87 Q9XI87_ARATH At1g14000 (F7A19.9 protein) (VH1-interacting kinase) Abnormal leaf venation. Increased number of veins end freely rather than in loops. Abnormal vein patterning-T. Nelson-2008 49335 At1g14000 (F7A19.9 protein) (VH1-interacting kinase) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; auxin-activated signaling pathway [GO:0009734]; brassinosteroid mediated signaling pathway [GO:0009742]; intracellular signal transduction [GO:0035556]; leaf vascular tissue pattern formation [GO:0010305]; protein phosphorylation [GO:0006468] locus:2014849; AT1G14000 dual specificity protein kinase Os07g0632800 protein (Fragment) A0A0N7KNW9 A0A0N7KNW9_ORYSJ Os07g0632800 OSNPB_070632800 ENOG411DQZI GLDH Q9SU56 GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial (EC 1.3.2.3) DISRUPTION PHENOTYPE: Delayed germination, chlorotic cotyledons and death at the cotyledon stage. {ECO:0000269|PubMed:18799460}. Seedling lethal without exogenous ascorbate; Delayed germination-R. De Paepe-2008 FUNCTION: Involved in the biosynthesis of ascorbic acid. Required for the accumulation of respiratory complex I. Uses L-galactono-1,4-lactone and L-gulono-1,4-lactone as substrates, but not D-galactono-1,4-lactone, D-gulono-1,4-lactone, L-mannono-1,4-lactone or D-galactonic acid. Also active with phenazine methosulfate and 1,4-benzoquinone as electron acceptors. {ECO:0000269|PubMed:18190525, ECO:0000269|PubMed:18799460}. PATHWAY: Cofactor biosynthesis; L-ascorbate biosynthesis. ARA:AT3G47930-MONOMER;MetaCyc:AT3G47930-MONOMER; 1.3.2.3; 1.3.2.3 68555 L-galactono-1,4-lactone dehydrogenase, mitochondrial (EC 1.3.2.3) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; plastid [GO:0009536]; D-arabinono-1,4-lactone oxidase activity [GO:0003885]; flavin adenine dinucleotide binding [GO:0050660]; galactonolactone dehydrogenase activity [GO:0016633]; L-gulono-1,4-lactone dehydrogenase activity [GO:0080049]; L-ascorbic acid biosynthetic process [GO:0019853] locus:2097865; AT3G47930 L-galactono-14-lactone dehydrogenase L-galactono-1,4-lactone dehydrogenase 2, mitochondrial (EC 1.3.2.3),L-galactono-1,4-lactone dehydrogenase 1, mitochondrial (EC 1.3.2.3) Q2QXY1,Q2RAP0 GLDH2_ORYSJ,GLDH1_ORYSJ GLDH2 Os12g0139600 LOC_Os12g04520 OsJ_35179,GLDH1 Os11g0143500 LOC_Os11g04740 OsJ_32931 FUNCTION: Involved in the biosynthesis of ascorbic acid. {ECO:0000250}. ENOG411DQZH Q84WS4,Q9LI79 Q84WS4_ARATH,Q9LI79_ARATH At3g25640 (Uncharacterized protein At3g25640),Uncharacterized protein 30091,33130 At3g25640 (Uncharacterized protein At3g25640),Uncharacterized protein plasmodesma [GO:0009506] locus:2102360; AT3G25640 DUF617 domain containing protein Os05g0577100 protein,Os01g0642600 protein Q0DFQ4,Q8RZE0 Q0DFQ4_ORYSJ,Q8RZE0_ORYSJ Os05g0577100 Os05g0577100 OSNPB_050577100,Os01g0642600 OSNPB_010642600 P0039G05.32 P0510C12.17 ENOG411DQZ7 PRP40A,PRP40B B6EUA9,F4JCC1,A0A1I9LM87 PR40A_ARATH,PR35B_ARATH,A0A1I9LM87_ARATH Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a),Pre-mRNA-processing protein 40B (Mediator of RNA polymerase II transcription subunit 35b),Pre-mRNA-processing protein 40B DISRUPTION PHENOTYPE: No visible phenotype, probably due to the redundancy with PRP40B and PRP40C. {ECO:0000269|PubMed:19467629}.,DISRUPTION PHENOTYPE: No visible phenotype, probably due to the redundancy with PPRP40A and PPRP40C. {ECO:0000269|PubMed:19467629}. FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II. {ECO:0000269|PubMed:19467629}. 109382,113569,111486 Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a),Pre-mRNA-processing protein 40B (Mediator of RNA polymerase II transcription subunit 35b),Pre-mRNA-processing protein 40B cytosol [GO:0005829]; mediator complex [GO:0016592]; U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. Highest expression in roots and cauline leaves. {ECO:0000269|PubMed:19467629}. locus:2194894;,locus:2091171; AT1G44910,AT3G19670 pre-mRNA-processing factor 40 Os01g0532200 protein (Fragment) A0A0P0V3P5,A0A0P0V3J7 A0A0P0V3P5_ORYSJ,A0A0P0V3J7_ORYSJ Os01g0532200 OSNPB_010532200 ENOG411DQZ6 ILP1 Q9FNN3,F4KCH7 ILP1_ARATH,F4KCH7_ARATH Transcriptional repressor ILP1 (INCREASED LEVEL OF POLYPLOIDY 1),GC-rich sequence DNA-binding factor-like protein DISRUPTION PHENOTYPE: Reduction of polyploidy and inhibition of hypocotyl elongation. {ECO:0000269|PubMed:17012601}. Shorter hypocotyls and roots compared to their wild type siblings in darkness. In the light plants have shorter hypocotyls and smaller cotyledons compared with the wild type and there was inhibition of root elongation. There is also a reduction in the number of 32C cells in 3 day old seedling hypocotyl cells. Short hypocotyl-M. Matsui-2006 FUNCTION: Transcriptional repressor regulating endoreduplication through control of A-type cyclins expression (PubMed:17012601). Does not bind to promoter sequences (in vitro) and may act by interacting with tissue-specific transcription factors (PubMed:17012601). Enhances the endocycle in endoreduplicating cells in seedlings (PubMed:17012601). Required for efficient splicing (PubMed:25568310). {ECO:0000269|PubMed:17012601, ECO:0000269|PubMed:25568310}. 100775,66496 Transcriptional repressor ILP1 (INCREASED LEVEL OF POLYPLOIDY 1),GC-rich sequence DNA-binding factor-like protein nucleus [GO:0005634]; RNA polymerase II core promoter proximal region sequence-specific DNA binding [GO:0000978]; transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001078]; translation repressor activity [GO:0030371]; DNA endoreduplication [GO:0042023]; mRNA splicing, via spliceosome [GO:0000398]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700] DEVELOPMENTAL STAGE: Gradual reduction of expression as the first leaf develops. 90% reduction of expression at day 20 after imbibition. {ECO:0000269|PubMed:17012601}. locus:2159552;,locus:2184697; AT5G08550,AT5G09210 GC-rich sequence DNA-binding factor Expressed protein (Os03g0853700 protein) Q84T85 Q84T85_ORYSJ Os03g0853700 LOC_Os03g63670 Os03g0853700 Os03g63670 OsJ_13411 OSNPB_030853700 ENOG411DQZ5 LACS3,LACS4,LACS5 Q9C7W4,Q9T0A0,Q9T009 LACS3_ARATH,LACS4_ARATH,LACS5_ARATH Long chain acyl-CoA synthetase 3 (EC 6.2.1.3),Long chain acyl-CoA synthetase 4 (EC 6.2.1.3),Long chain acyl-CoA synthetase 5 (EC 6.2.1.3) FUNCTION: Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT1G64400-MONOMER;MetaCyc:AT1G64400-MONOMER;,ARA:AT4G23850-MONOMER;MetaCyc:AT4G23850-MONOMER;,ARA:AT4G11030-MONOMER;MetaCyc:AT4G11030-MONOMER; 6.2.1.3 74751,74508,74064 Long chain acyl-CoA synthetase 3 (EC 6.2.1.3),Long chain acyl-CoA synthetase 4 (EC 6.2.1.3),Long chain acyl-CoA synthetase 5 (EC 6.2.1.3) endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; fatty acid metabolic process [GO:0006631],Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; fatty acid metabolic process [GO:0006631],ATP binding [GO:0005524]; decanoate--CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]; fatty acid metabolic process [GO:0006631] locus:2014265;,locus:2138141;,locus:2136148; AT1G64400,AT4G23850,AT4G11030 acyl-CoA synthetase Os01g0655800 protein (Fragment),Os01g0681200 protein Q0JKR1,Q0JKD5 Q0JKR1_ORYSJ,Q0JKD5_ORYSJ Os01g0655800 Os01g0655800 OSNPB_010655800,Os01g0681200 Os01g0681200 OsJ_03021 OSNPB_010681200 ENOG411DQZ4 A2RVR7,A0A1P8AYS2,A0A1P8AYP4,F4IK58,A0A1P8AYU8 A2RVR7_ARATH,A0A1P8AYS2_ARATH,A0A1P8AYP4_ARATH,F4IK58_ARATH,A0A1P8AYU8_ARATH At2g47020 (Peptide chain release factor 1),Peptide chain release factor 1 46828,49803,37381,30822,39306 At2g47020 (Peptide chain release factor 1),Peptide chain release factor 1 cytoplasm [GO:0005737]; translation release factor activity, codon specific [GO:0016149],translation release factor activity [GO:0003747],translational termination [GO:0006415] locus:2041409; AT2G47020 peptide chain release factor Os05g0277300 protein (Fragment),Os05g0277300 protein Q0DJH9,A0A0P0WK99 Q0DJH9_ORYSJ,A0A0P0WK99_ORYSJ Os05g0277300 Os05g0277300 OSNPB_050277300,Os05g0277300 OSNPB_050277300 ENOG411DQZ3 DDI1 Q1EBV4,F4JC86 Q1EBV4_ARATH,F4JC86_ARATH At3g13235 (Ubiquitin family protein) (Uncharacterized protein At3g13235),Ubiquitin family protein 45359,45272 At3g13235 (Ubiquitin family protein) (Uncharacterized protein At3g13235),Ubiquitin family protein cytosol [GO:0005829]; nucleus [GO:0005634]; aspartic-type endopeptidase activity [GO:0004190]; polyubiquitin modification-dependent protein binding [GO:0031593]; ubiquitin binding [GO:0043130]; response to cadmium ion [GO:0046686],aspartic-type endopeptidase activity [GO:0004190]; ubiquitin binding [GO:0043130] locus:505006342; AT3G13235 DNA damage-inducible protein Os02g0198600 protein (Putative DNA-damage inducible protein) (cDNA clone:J013126L13, full insert sequence),Os02g0198600 protein (Fragment) Q6H734,A0A0P0VG16 Q6H734_ORYSJ,A0A0P0VG16_ORYSJ Os02g0198600 Os02g0198600 OsJ_05773 OSNPB_020198600 P0026H03.19,Os02g0198600 OSNPB_020198600 ENOG411DQZ2 RAE1 Q38942,Q9LMQ0 RAE1_ARATH,Q9LMQ0_ARATH Protein RAE1 (RNA export factor 1),F7H2.18 protein (Transducin/WD40 repeat-like superfamily protein) 38268,15056 Protein RAE1 (RNA export factor 1),F7H2.18 protein (Transducin/WD40 repeat-like superfamily protein) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; RNA binding [GO:0003723]; ubiquitin binding [GO:0043130]; mRNA transport [GO:0051028]; protein import into nucleus [GO:0006606]; RNA export from nucleus [GO:0006405]; transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000972],nuclear pore [GO:0005643]; RNA binding [GO:0003723]; ubiquitin binding [GO:0043130]; protein import into nucleus [GO:0006606]; RNA export from nucleus [GO:0006405]; transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000972] locus:2025732;,locus:2036159; AT1G80670,AT1G15850 rae1-like protein Os01g0635400 protein (mRNA-associated protein mrnp41-like),Os08g0176800 protein (Putative RAE1 (RNA export 1, S.pombe) homolog) (cDNA clone:J013156C15, full insert sequence) Q8RYM1,Q6ZBS9 Q8RYM1_ORYSJ,Q6ZBS9_ORYSJ P0663E10.38-1 Os01g0635400 OSJNOa234E14.9-1 OSNPB_010635400,Os08g0176800 Os08g0176800 OJ1120_C08.3 OsJ_26237 OSNPB_080176800 P0583B06.11 ENOG411DQZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411DQZ0 WRKY26 Q9C5T3,Q0V871 WRK26_ARATH,Q0V871_ARATH Probable WRKY transcription factor 26 (SPF1-like protein) (WRKY DNA-binding protein 26),At5g07100 (WRKY DNA-binding protein 26) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250, ECO:0000269|PubMed:21336597}. 34911,24784 Probable WRKY transcription factor 26 (SPF1-like protein) (WRKY DNA-binding protein 26),At5g07100 (WRKY DNA-binding protein 26) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular heat acclimation [GO:0070370]; cellular response to heat [GO:0034605]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2169354; AT5G07100 Transcription factor NA NA NA NA NA NA NA ENOG411DQZ9 atpB P19366 ATPB_ARATH ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. {ECO:0000255|HAMAP-Rule:MF_01347}. ARA:ATCG00480-MONOMER; 3.6.3.14 53934 ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast ATP synthase complex [GO:0009544]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; plastoglobule [GO:0010287]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]; stromule [GO:0010319]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; zinc ion binding [GO:0008270]; ATP synthesis coupled proton transport [GO:0015986]; defense response to fungus, incompatible interaction [GO:0009817]; response to cold [GO:0009409] locus:504954671; ATCG00480 Produces ATP from ADP in the presence of a proton gradient across the membrane ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta),ATP synthase subunit beta (EC 3.6.3.14) P12085,A0A0P0XTT3,A0A0P0Y832 ATPB_ORYSJ,A0A0P0XTT3_ORYSJ,A0A0P0Y832_ORYSJ atpB LOC_Osp1g00410,Os10g0355800 OSNPB_100355800,Os12g0207500 OSNPB_120207500 FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. {ECO:0000255|HAMAP-Rule:MF_01347}.,FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. {ECO:0000256|RuleBase:RU003553}. ENOG411DQZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain BHLH transcription factor (Basic helix-loop-helix protein-like) (Os01g0196300 protein) (cDNA clone:J033115I17, full insert sequence),Os01g0195801 protein,Os01g0195967 protein Q5SMX4,A0A0P0UZP9,A0A0P0UZQ6 Q5SMX4_ORYSJ,A0A0P0UZP9_ORYSJ,A0A0P0UZQ6_ORYSJ Os01g0196300 Os01g0196300 OSNPB_010196300 P0498B01.36,Os01g0195801 OSNPB_010195801,Os01g0195967 OSNPB_010195967 ENOG411EMQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EMQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EB33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0135900 protein,Os02g0135900 protein (Fragment) Q6Z0Y8,A0A0N7KEM9 Q6Z0Y8_ORYSJ,A0A0N7KEM9_ORYSJ Os02g0135900 Os02g0135900 OSJNBa0081C13.12 OSNPB_020135900,Os02g0135900 OSNPB_020135900 ENOG411EMQV F4HW65 STIL1_ARATH Protein STICHEL-like 1 124891 Protein STICHEL-like 1 DNA polymerase III complex [GO:0009360]; DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261] locus:2012497; AT1G14460 DNA polymerase III subunits gamma and tau domain III NA NA NA NA NA NA NA ENOG411EMQC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMQI T17F15.70,SUO Q9SU69,F4JCS8,A0A1I9LTA1 Q9SU69_ARATH,F4JCS8_ARATH,A0A1I9LTA1_ARATH BAH and TFIIS domain-containing protein (Uncharacterized protein T17F15.70),Protein SUO,BAH and TFIIS domain-containing protein 172230,171940,172358 BAH and TFIIS domain-containing protein (Uncharacterized protein T17F15.70),Protein SUO,BAH and TFIIS domain-containing protein elongin complex [GO:0070449]; chromatin binding [GO:0003682]; transcription elongation from RNA polymerase II promoter [GO:0006368],elongin complex [GO:0070449]; nucleus [GO:0005634]; P-body [GO:0000932]; chromatin binding [GO:0003682]; miRNA mediated inhibition of translation [GO:0035278]; transcription elongation from RNA polymerase II promoter [GO:0006368],nucleus [GO:0005634]; chromatin binding [GO:0003682] locus:2097925;,locus:2097915; AT3G48060,AT3G48050 TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411EMQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor S-II (TFIIS) central domain NA NA NA NA NA NA NA ENOG411E1FQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os05g0324600 protein (cDNA clone:002-129-E04, full insert sequence) Q5W6T7 Q5W6T7_ORYSJ Os05g0324600 OsJ_18071 OSNPB_050324600 P0018A03.12 ENOG411E1FJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Expressed protein Expressed protein (Os03g0106200 protein) (cDNA clone:J013026G14, full insert sequence) Q10T01 Q10T01_ORYSJ Os03g0106200 LOC_Os03g01580 Os03g0106200 OsJ_09089 OSNPB_030106200 ENOG411E1FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os04g0686650 protein A0A0P0WGQ6 A0A0P0WGQ6_ORYSJ Os04g0686650 OSNPB_040686650 ENOG411DXIZ Q9SSN9,F4K383,F4JK03,F4K382 Q9SSN9_ARATH,F4K383_ARATH,F4JK03_ARATH,F4K382_ARATH Disease resistance protein (TIR-NBS class) (Similar to disease resistance protein NL25),Disease resistance protein (TIR-NBS class),Disease resistance protein (TIR-NBS-LRR class) 58750,72856,63146,69527 Disease resistance protein (TIR-NBS class) (Similar to disease resistance protein NL25),Disease resistance protein (TIR-NBS class),Disease resistance protein (TIR-NBS-LRR class) ADP binding [GO:0043531]; signal transduction [GO:0007165],chloroplast [GO:0009507]; ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2032637;,locus:2156494;,locus:2133742; AT1G72870,AT5G48780,AT4G09430 resistance protein NA NA NA NA NA NA NA ENOG411DXIY Q9LK11 Q9LK11_ARATH Beta-1,3-glucanase-like protein (Glycosyl hydrolase family 17 protein) (O-Glycosyl hydrolases family 17 protein) ARA:AT3G24330-MONOMER; 55656 Beta-1,3-glucanase-like protein (Glycosyl hydrolase family 17 protein) (O-Glycosyl hydrolases family 17 protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2087198; AT3G24330 glucan endo-1-3-beta-glucosidase NA NA NA NA NA NA NA ENOG411DXIX CYP89A2,''cytochrome P450,CYP89A3 Q42602,Q9XIQ1,Q9ZUQ6,Q9XIQ3,Q9XIQ2,F4K231 C89A2_ARATH,Q9XIQ1_ARATH,Q9ZUQ6_ARATH,Q9XIQ3_ARATH,Q9XIQ2_ARATH,F4K231_ARATH Cytochrome P450 89A2 (EC 1.14.-.-) (ATH 6-1) (CYPLXXXIX),Cytochrome P450, family 89, subfamily A, polypeptide 5 (Putative cytochrome P450) (Putative cytochrome p450 protein),Cytochrome P450 superfamily protein (Putative cytochrome p450),Cytochrome P450, family 87, subfamily A, polypeptide 7 (F13O11.23 protein),Cytochrome P450, family 87, subfamily A, polypeptide 6 (Putative cytochrome P450),Cytochrome P450, family 89, subfamily A, polypeptide 3 ARA:AT1G64900-MONOMER;,ARA:AT1G64950-MONOMER;,ARA:AT2G12190-MONOMER;,ARA:AT1G64930-MONOMER;,ARA:AT1G64940-MONOMER; 1.14.-.- 58605,59116,59304,59004,59278,57739 Cytochrome P450 89A2 (EC 1.14.-.-) (ATH 6-1) (CYPLXXXIX),Cytochrome P450, family 89, subfamily A, polypeptide 5 (Putative cytochrome P450) (Putative cytochrome p450 protein),Cytochrome P450 superfamily protein (Putative cytochrome p450),Cytochrome P450, family 87, subfamily A, polypeptide 7 (F13O11.23 protein),Cytochrome P450, family 87, subfamily A, polypeptide 6 (Putative cytochrome P450),Cytochrome P450, family 89, subfamily A, polypeptide 3 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2010781;,locus:2010886;,locus:2045859;,locus:2010831;,locus:2010841;,locus:2163223; AT1G64900,AT1G64950,AT2G12190,AT1G64930,AT1G64940,AT5G61320 cytochrome P450 Os08g0152300 protein (Putative cytochrome P450),Os10g0515900 protein (Putative cytochrome P450) (Transposon protein, putative, unclassified, expressed),Os10g0513400 protein (Transposon protein, putative, unclassified, expressed),Os06g0328900 protein (Fragment),Cytochrome P450 family protein (Os10g0514700 protein),Os10g0515200 protein (Putative cytochrome P450) (Transposon protein, putative, unclassified, expressed) (cDNA clone:001-201-B02, full insert sequence),Os10g0513900 protein (Putative cytochrome P450) (Transposon protein, putative, unclassified, expressed) (cDNA clone:001-202-F01, full insert sequence) (cDNA clone:J033061A12, full insert sequence),Cytochrome P450 family protein (Os10g0514901 protein) (Putative cytochrome P450),Os10g0515400 protein,Os08g0152400 protein (Fragment),Os06g0632300 protein (Fragment),Os10g0514450 protein (Fragment),Os10g0514300 protein,Os10g0514500 protein Q84S05,Q9FW97,Q7XCW0,Q0DCH5,Q7XCU9,Q9FW92,Q9FW80,Q9FW91,A0A0P0XW95,A0A0P0XBR4,A0A0N7KMG3,A0A0P0XWU9,A0A0P0XWQ5,A0A0P0XW68 Q84S05_ORYSJ,Q9FW97_ORYSJ,Q7XCW0_ORYSJ,Q0DCH5_ORYSJ,Q7XCU9_ORYSJ,Q9FW92_ORYSJ,Q9FW80_ORYSJ,Q9FW91_ORYSJ,A0A0P0XW95_ORYSJ,A0A0P0XBR4_ORYSJ,A0A0N7KMG3_ORYSJ,A0A0P0XWU9_ORYSJ,A0A0P0XWQ5_ORYSJ,A0A0P0XW68_ORYSJ OJ1349_D05.113 Os08g0152300 OSNPB_080152300,Os10g0515900 LOC_Os10g37160 Os10g0515900 OsJ_32155 OSJNBa0026L12.2 OSNPB_100515900,Os10g0513400 LOC_Os10g36960 OSNPB_100513400,Os06g0328900 Os06g0328900 OSNPB_060328900,Os10g0514700 LOC_Os10g37070 OSNPB_100514700,Os10g0515200 LOC_Os10g37110 Os10g0515200 OSJNBa0026L12.5 OSNPB_100515200,Os10g0513900 LOC_Os10g36980 Os10g0513900 OsJ_32146 OSJNBa0026L12.14 OSNPB_100513900,Os10g0514901 LOC_Os10g37100 OsJ_32152 OSJNBa0026L12.6 OSNPB_100514901,Os10g0515400 OSNPB_100515400,Os08g0152400 OSNPB_080152400,Os06g0632300 OSNPB_060632300,Os10g0514450 OSNPB_100514450,Os10g0514300 OSNPB_100514300,Os10g0514500 OSNPB_100514500 ENOG411DXIW RFC5 Q9CAQ8 RFC5_ARATH Replication factor C subunit 5 (AtRFC5) (Activator 1 subunit 5) (Protein EMBRYO DEFECTIVE 2810) DISRUPTION PHENOTYPE: Moderately dwarfed plants with small organs due to reduced cell proliferation rate. Enhanced resistance to pathogens. {ECO:0000269|PubMed:19482917}. Null: Embryo defective; Preglobular; Knockdown: Dwarf; Narrow leaves and petals; Reduced fertility; Sensitive to SA; Resistant to disease-D. Meinke-2009 FUNCTION: Functions in cell replication and proliferation. May be involved in chromatin assembly and remodeling. Plays a role in the negative control of pathogenesis-related gene expression and systemic acquired resistance (SAR). {ECO:0000269|PubMed:19482917, ECO:0000269|PubMed:20023430}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174411;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091; 41370 Replication factor C subunit 5 (AtRFC5) (Activator 1 subunit 5) (Protein EMBRYO DEFECTIVE 2810) DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; defense response [GO:0006952]; DNA repair [GO:0006281]; DNA-dependent DNA replication [GO:0006261]; negative regulation of defense response [GO:0031348] locus:2204710; AT1G77470 replication factor C Replication factor C subunit 3 (OsRFC3) (Activator 1 subunit 3) Q6YZ54 RFC3_ORYSJ RFC3 Os02g0775200 LOC_Os02g53500 OJ1448_G06.20 OSJNBb0013K01.1 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. ENOG411DXIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain Sulfotransferase (EC 2.8.2.-) A0A0P0VN52 A0A0P0VN52_ORYSJ Os02g0684100 OSNPB_020684100 ENOG411DXIU LOS1,MGH6.2 Q9ASR1,F4JB05,F4JB06,F4JNE0 EF2_ARATH,F4JB05_ARATH,F4JB06_ARATH,F4JNE0_ARATH Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1),Ribosomal protein S5/Elongation factor G/III/V family protein,Poly(U)-specific endoribonuclease-B protein DISRUPTION PHENOTYPE: Blocks specifically low temperature-induced transcription of cold-responsive genes such as RD29A (PubMed:9401119, PubMed:12032361). Reduced capacity to develop freezing tolerance but does not impair the vernalization response. Defective in protein synthesis in the cold (PubMed:12032361). {ECO:0000269|PubMed:12032361, ECO:0000269|PubMed:9401119}. Sensitive to freezing-J. Zhu -2002 FUNCTION: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity). Involved in cold responses leading to freezing tolerance via the induction of cold-responsive genes (PubMed:9401119, PubMed:12032361). {ECO:0000250|UniProtKB:P32324, ECO:0000269|PubMed:12032361, ECO:0000269|PubMed:9401119}. PATHWAY: Protein biosynthesis; polypeptide chain elongation. {ECO:0000250|UniProtKB:P32324}. R-ATH-156902;R-ATH-5358493;R-ATH-6798695;R-ATH-8876725; 93891,90995,87830,93352 Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1),Ribosomal protein S5/Elongation factor G/III/V family protein,Poly(U)-specific endoribonuclease-B protein apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; mRNA binding [GO:0003729]; translation elongation factor activity [GO:0003746]; cold acclimation [GO:0009631]; response to cold [GO:0009409]; response to cytokinin [GO:0009735],ribosome [GO:0005840]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746],GTP binding [GO:0005525]; GTPase activity [GO:0003924] TISSUE SPECIFICITY: Expressed in root, stem, leaves, flowers and siliques. {ECO:0000269|PubMed:12032361}. locus:2205235;,locus:2829525; AT1G56070,AT3G12915,AT4G17100 Elongation factor Os01g0723000 protein (Putative elongation factor 2) (cDNA clone:J033048F11, full insert sequence) (cDNA clone:J033098E24, full insert sequence),Elongation factor 2 (Os02g0519900 protein) (Putative elongation factor 2),Os01g0742200 protein (Putative Elongation factor 2) (cDNA clone:001-115-C05, full insert sequence),Elongation factor (OSJNBa0020P07.3 protein) (Os04g0118400 protein) (cDNA clone:J033028E07, full insert sequence) (cDNA clone:J033037G17, full insert sequence),Os02g0519900 protein (Fragment),Os04g0118400 protein (Fragment) Q8W0C4,Q6H4L2,Q5JKU5,Q7XTK1,A0A0P0VJQ0,A0A0N7KIH5,A0A0P0VJN8,A0A0P0VJM7,A0A0P0W6A1,A0A0P0VJL8 Q8W0C4_ORYSJ,Q6H4L2_ORYSJ,Q5JKU5_ORYSJ,Q7XTK1_ORYSJ,A0A0P0VJQ0_ORYSJ,A0A0N7KIH5_ORYSJ,A0A0P0VJN8_ORYSJ,A0A0P0VJM7_ORYSJ,A0A0P0W6A1_ORYSJ,A0A0P0VJL8_ORYSJ Os01g0723000 OSNPB_010723000 P0022F10.10 P0690B02.37,Os02g0519900 Os02g0519900 OsJ_06933 OSNPB_020519900 P0461D06.32,Os01g0742200 OsJ_03407 OSNPB_010742200 P0439E07.16,Os04g0118400 Os04g0118400 OsJ_13577 OSJNBa0020P07.3 OSNPB_040118400,Os02g0519900 OSNPB_020519900,Os04g0118400 OSNPB_040118400 ENOG411DXIT P0C7R4 PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290 73890 Pentatricopeptide repeat-containing protein At1g69290 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2026454; AT1G69290 Pentatricopeptide repeat-containing protein Os01g0788900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:001-124-D06, full insert sequence),Os01g0788900 protein (Fragment) Q8RVE5,A0A0P0V971 Q8RVE5_ORYSJ,A0A0P0V971_ORYSJ Os01g0788900 Os01g0788900 OSNPB_010788900 P0415A04.47 P0557A01.5,Os01g0788900 OSNPB_010788900 ENOG411DXIS Q8LCT3,Q8LEK4 TRL22_ARATH,TRL21_ARATH Thioredoxin-like 2-2, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 2) (AtACHT2),Thioredoxin-like 2-1, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 1) (AtACHT1) FUNCTION: Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:19109414}. 26337,24353 Thioredoxin-like 2-2, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 2) (AtACHT2),Thioredoxin-like 2-1, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 1) (AtACHT1) chloroplast [GO:0009507]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; cell redox homeostasis [GO:0045454],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; cell redox homeostasis [GO:0045454]; detection of redox state [GO:0051776]; regulation of photosynthesis [GO:0010109] locus:2134443;,locus:2120860; AT4G29670,AT4G26160 Thioredoxin Thioredoxin-like 2, chloroplastic (Lilium-type thioredoxin 2) (OsTrx19) Q5TKD8 TRL2_ORYSJ Os05g0200100 LOC_Os05g11090 OSJNBa0017O06.11 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411DXIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Expressed protein (Os03g0159700 protein) (cDNA clone:001-117-F01, full insert sequence) Q8H8A9 Q8H8A9_ORYSJ OJ1134F05.20 LOC_Os03g06370 Os03g0159700 OsJ_09489 OSNPB_030159700 ENOG411DXIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase Laccase-10 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 10) (Diphenol oxidase 10) (Urishiol oxidase 10) Q10ND7 LAC10_ORYSJ LAC10 Os03g0273200 LOC_Os03g16610 OsJ_009911 OsJ_10313 FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}. ENOG411DXIP GOLS7,GOLS4 Q4PSY4,O22693 GOLS7_ARATH,GOLS4_ARATH Galactinol synthase 7 (AtGolS7) (GolS-7) (EC 2.4.1.123),Galactinol synthase 4 (AtGolS4) (GolS-4) (EC 2.4.1.123) FUNCTION: Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. May promote plant stress tolerance (By similarity). {ECO:0000250}. 2.4.1.123 37768,38511 Galactinol synthase 7 (AtGolS7) (GolS-7) (EC 2.4.1.123),Galactinol synthase 4 (AtGolS4) (GolS-4) (EC 2.4.1.123) cytoplasm [GO:0005737]; inositol 3-alpha-galactosyltransferase activity [GO:0047216]; metal ion binding [GO:0046872]; galactose metabolic process [GO:0006012],cytoplasm [GO:0005737]; inositol 3-alpha-galactosyltransferase activity [GO:0047216]; metal ion binding [GO:0046872]; galactose metabolic process [GO:0006012]; response to oxidative stress [GO:0006979] locus:2195668;,locus:2036576; AT1G60450,AT1G60470 galactinol synthase NA NA NA NA NA NA NA ENOG411DXIN DWA3 F4HTH8,A0A1P8AW58,F4HTH9,A0A1P8AW68,A0A1P8AW69,F4I7E1,A0A1P8AV57 F4HTH8_ARATH,A0A1P8AW58_ARATH,F4HTH9_ARATH,A0A1P8AW68_ARATH,A0A1P8AW69_ARATH,F4I7E1_ARATH,A0A1P8AV57_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog Sensitive to ABA and salt-X. Deng-2011 FUNCTION: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. {ECO:0000256|HAMAP-Rule:MF_03022}. 129175,110267,129033,108041,112385,112527,117993 Katanin p80 WD40 repeat-containing subunit B1 homolog Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; katanin complex [GO:0008352]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; microtubule severing [GO:0051013]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651],katanin complex [GO:0008352]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; microtubule severing [GO:0051013],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; katanin complex [GO:0008352]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; microtubule severing [GO:0051013] locus:2008495;,locus:2202129; AT1G61210,AT1G11160 katanin p80 WD40 repeat-containing subunit B1 homolog Katanin p80 WD40 repeat-containing subunit B1 homolog,Os01g0531300 protein (Fragment) Q337H9,Q5ZCG1,A0A0P0WGD2,A0A0P0V3J5 Q337H9_ORYSJ,Q5ZCG1_ORYSJ,A0A0P0WGD2_ORYSJ,A0A0P0V3J5_ORYSJ Os10g0494800 LOC_Os10g35200 Os10g0494800 OSNPB_100494800,Os01g0780400 OSNPB_010780400 P0010B10.28,Os04g0677700 OSNPB_040677700,Os01g0531300 OSNPB_010531300 FUNCTION: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. {ECO:0000256|HAMAP-Rule:MF_03022}. ENOG411DXIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zeta toxin Os01g0774500 protein (Putative histone H1flk) (cDNA clone:J023010E17, full insert sequence) Q5ZC04 Q5ZC04_ORYSJ Os01g0774500 OsJ_03644 OSNPB_010774500 P0490D09.28 ENOG411DXIK Q67YE7,F4J355 Q67YE7_ARATH,F4J355_ARATH Protein-tyrosine phosphatase (Protein-tyrosine-phosphatase-like protein),Protein-tyrosine phosphatase ARA:AT3G44620-MONOMER; 26950,29690 Protein-tyrosine phosphatase (Protein-tyrosine-phosphatase-like protein),Protein-tyrosine phosphatase protein tyrosine phosphatase activity [GO:0004725],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; protein tyrosine phosphatase activity [GO:0004725] locus:2098135; AT3G44620 Low molecular weight protein-tyrosine-phosphatase Os08g0557400 protein (Putative low molecular weight phosphotyrosine protein) (cDNA clone:006-305-H07, full insert sequence) Q6ZJ11 Q6ZJ11_ORYSJ Os08g0557400 Os08g0557400 OJ1150_A11.23 OsJ_28258 OSNPB_080557400 ENOG411DXIJ GID1B,GID1C,GID1A Q9LYC1,Q940G6,Q9MAA7 GID1B_ARATH,GID1C_ARATH,GID1A_ARATH Gibberellin receptor GID1B (EC 3.-.-.-) (AtCXE14) (Carboxylesterase 14) (GID1-like protein 2) (Protein GA INSENSITIVE DWARF 1B) (AtGID1B),Gibberellin receptor GID1C (EC 3.-.-.-) (AtCXE19) (Carboxylesterase 19) (GID1-like protein 3) (Protein GA INSENSITIVE DWARF 1C) (AtGID1C),Gibberellin receptor GID1A (EC 3.-.-.-) (AtCXE10) (Carboxylesterase 10) (GID1-like protein 1) (Protein GA INSENSITIVE DWARF 1A) (AtGID1A) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. {ECO:0000269|PubMed:17194763, ECO:0000269|PubMed:17521411}. No visible phenotype.,Showed a lower yield of seeds per plant. Most pollen adhered to an incorrect region below the stigma which was probably caused by the incomplete elongation of stamens resulting in low fertility.,Chilling of seedlings at 4°C for 1 month effectively induces flowering of ga1-3 without GA treatment. However no bolting of the stem or flowering of the triple homozygous progeny could be detected even after 40 days of cold treatment.,The triple homozygous progeny does not germinate when untreated. However when the seed coat of ungerminated seeds is removed under an optical microscope the treated seeds germinate under continuous light for 3 days on an MS plate and develop into seedlings.,The triple homozygous progeny is insensitive to GA.,The triple homozygous progeny showed very severe dwarfism whereas the parental plants (Aabbcc) showed a weak phenotype.,When 0.01 μM GA4 was added to the medium showed a lower germination rate than the wild-type.,Final stem height slightly taller than wild type.,Only slight differences between mutant and wild type plants with regard to rosette radius and root length.,Reduction in seed number.,Reduction in silique length.,Complete infertility.,Defect in floral organ morphology.: dramatic reduction in length of pistil stamen and petal development arrested and striking reduction in the elongation of the pedicel.,Delayed flowering.,Dramatic reduction in rosette radius and root length compared to wild type (87 and 74% reduction respectively).,Dwarf phenotype.,Elevated gibberellin levels.,Increased levels of RGA protein.,Unresponsive to GA treatment.,Partial suppression of the gid1a-1 gid1b-1 gid1c-1 triple mutant phenotype.,Non-germinating seed phenotype in fully homozygous progeny which can be bypassed by separating the embryos from the testa and transferring them to fresh agar plates.,Dwarf phenotype recognizable at a young seedling stage.,Semi-dwarf phenotype.,Stem elongation is reduced by 76% compared to wild type.,Phenotype not described. FUNCTION: Functions as soluble gibberellin (GA) receptor. GA is an essential hormone that regulates growth and development in plants. Binds with high affinity the biologically active gibberellin GA4, but has no affinity for the biologically inactive GAs. In response to GA, interacts with specific DELLA proteins, known as repressors of GA-induced growth, and targets them for degradation via proteasome. Seems to be required for GA signaling that controls root growth, seed germination and flower development. May function as a dominant GA receptor at low GA concentrations in germination. Partially redundant with GID1A and GID1C. {ECO:0000269|PubMed:16709201, ECO:0000269|PubMed:17194763, ECO:0000269|PubMed:17521411}.,FUNCTION: Functions as soluble gibberellin (GA) receptor. GA is an essential hormone that regulates growth and development in plants. Binds with high affinity the biologically active gibberellin GA4, but has no affinity for the biologically inactive GAs. In response to GA, interacts with specific DELLA proteins, known as repressors of GA-induced growth, and targets them for degradation via proteasome. Seems to be required for GA signaling that controls root growth, seed germination and stem elongation. Partially redundant with GID1A and GID1B. {ECO:0000269|PubMed:16709201, ECO:0000269|PubMed:17194763, ECO:0000269|PubMed:17521411}.,FUNCTION: Functions as soluble gibberellin (GA) receptor. GA is an essential hormone that regulates growth and development in plants. Binds with high affinity the biologically active gibberellin GA4, but has no affinity for the biologically inactive GAs. In response to GA, interacts with specific DELLA proteins, known as repressors of GA-induced growth, and targets them for degradation via proteasome. Seems to be required for GA signaling that controls root growth, seed germination, stem elongation and flower development. Partially redundant with GID1B and GID1C. {ECO:0000269|PubMed:16709201, ECO:0000269|PubMed:17194763, ECO:0000269|PubMed:17521411}. ARA:AT3G63010-MONOMER;,ARA:AT5G27320-MONOMER;,ARA:AT3G05120-MONOMER; 3.-.-.- 40300,38426,38618 Gibberellin receptor GID1B (EC 3.-.-.-) (AtCXE14) (Carboxylesterase 14) (GID1-like protein 2) (Protein GA INSENSITIVE DWARF 1B) (AtGID1B),Gibberellin receptor GID1C (EC 3.-.-.-) (AtCXE19) (Carboxylesterase 19) (GID1-like protein 3) (Protein GA INSENSITIVE DWARF 1C) (AtGID1C),Gibberellin receptor GID1A (EC 3.-.-.-) (AtCXE10) (Carboxylesterase 10) (GID1-like protein 1) (Protein GA INSENSITIVE DWARF 1A) (AtGID1A) cytoplasm [GO:0005737]; nucleus [GO:0005634]; gibberellin binding [GO:0010331]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056]; floral organ morphogenesis [GO:0048444]; fruit morphogenesis [GO:0048530]; gibberellin mediated signaling pathway [GO:0010476]; negative regulation of gene expression [GO:0010629]; positive regulation of fertilization [GO:1905516]; positive regulation of gibberellic acid mediated signaling pathway [GO:0009939]; response to gibberellin [GO:0009739],cytoplasm [GO:0005737]; nucleus [GO:0005634]; gibberellin binding [GO:0010331]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056]; floral organ morphogenesis [GO:0048444]; fruit morphogenesis [GO:0048530]; gibberellin mediated signaling pathway [GO:0010476]; negative regulation of gene expression [GO:0010629]; positive regulation of gibberellic acid mediated signaling pathway [GO:0009939]; response to gibberellin [GO:0009739],cytoplasm [GO:0005737]; nucleus [GO:0005634]; gibberellin binding [GO:0010331]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056]; floral organ morphogenesis [GO:0048444]; fruit morphogenesis [GO:0048530]; gibberellin mediated signaling pathway [GO:0010476]; positive regulation of fertilization [GO:1905516]; positive regulation of gibberellic acid mediated signaling pathway [GO:0009939]; response to gibberellin [GO:0009739] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:14738307}. locus:2099152;,locus:2146425;,locus:2096314; AT3G63010,AT5G27320,AT3G05120 gibberellin receptor Gibberellin receptor GID1 (EC 3.-.-.-) (Gibberellin-insensitive dwarf protein 1) (Protein GIBBERELLIN INSENSITIVE DWARF1) Q6L545 GID1_ORYSJ GID1 Os05g0407500 LOC_Os05g33730 OJ1657_H11.10 P0040B10.6 DISRUPTION PHENOTYPE: Severe dwarf phenotype with wide and dark-green leaf blades. Plants insensitive to gibberellic acid (GA). {ECO:0000269|PubMed:16193045}. FUNCTION: Functions as soluble gibberellin (GA) receptor. GA is an essential hormone that regulates growth and development in plants. Binds with high affinity the biologically active GAs such as GA1, GA3 and GA4, but has low or no affinity for the biologically inactive GAs. Upon GA-binding, it interacts with the DELLA protein SLR1, a repressor of GA signaling. This leads to SLR1 degradation by the proteasome, allowing the GA signaling pathway. {ECO:0000269|PubMed:16193045}. ENOG411DXII B3GALT7 Q6NQB7 B3GT7_ARATH Beta-1,3-galactosyltransferase 7 (EC 2.4.1.-) FUNCTION: Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue. {ECO:0000269|PubMed:18548197}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.- 44675 Beta-1,3-galactosyltransferase 7 (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; beta-1,3-galactosyltransferase activity [GO:0048531]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18548197}. locus:2029471; AT1G77810 beta-13-galactosyltransferase 7-like Hexosyltransferase (EC 2.4.1.-) (Fragment) A0A0P0VKK2 A0A0P0VKK2_ORYSJ Os02g0566800 OSNPB_020566800 ENOG411DXIH Q9LT81 C3H39_ARATH Zinc finger CCCH domain-containing protein 39 (AtC3H39) 43121 Zinc finger CCCH domain-containing protein 39 (AtC3H39) cytosol [GO:0005829]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 3'-UTR binding [GO:0003730]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; regulation of transcription, DNA-templated [GO:0006355] locus:2090669; AT3G19360 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411DXIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC Os08g0369600 protein (Transcription factor-like),Os08g0363900 protein (Fragment) Q6Z253,A0A0P0XF74 Q6Z253_ORYSJ,A0A0P0XF74_ORYSJ Os08g0369600 Os08g0369600 OJ1770_H03.18 OSJNBa0091C18.40 OSNPB_080369600,Os08g0363900 OSNPB_080363900 ENOG411DXIF T8E3.5 Q9C564 Q9C564_ARATH HXXXD-type acyl-transferase family protein (N-hydroxycinnamoyl/benzoyltransferase, putative) (Uncharacterized protein F27M3_28) ARA:AT1G31490-MONOMER; 49286 HXXXD-type acyl-transferase family protein (N-hydroxycinnamoyl/benzoyltransferase, putative) (Uncharacterized protein F27M3_28) chloroplast [GO:0009507]; copper ion binding [GO:0005507]; primary amine oxidase activity [GO:0008131]; quinone binding [GO:0048038]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; amine metabolic process [GO:0009308] locus:2028626; AT1G31490 transferase family Os06g0151100 protein (Putative anthranilate N-hydroxycinnamoyl/benzoyltransferase),Os01g0261600 protein (Os01g0262000 protein),Os11g0644500 protein,Os08g0158800 protein (Fragment),Os01g0261700 protein (Fragment),Os07g0244600 protein Q5VMK3,A0A0P0V120,A0A0N7KTA0,A0A0P0XCH2,A0A0P0V0N0,A0A0P0X4C7 Q5VMK3_ORYSJ,A0A0P0V120_ORYSJ,A0A0N7KTA0_ORYSJ,A0A0P0XCH2_ORYSJ,A0A0P0V0N0_ORYSJ,A0A0P0X4C7_ORYSJ Os06g0151100 OSNPB_060151100 P0529C07.16 P0710H01.28,Os01g0262000 Os01g0261600 OSNPB_010261600 OSNPB_010262000,Os11g0644500 OSNPB_110644500,Os08g0158800 OSNPB_080158800,Os01g0261700 OSNPB_010261700,Os07g0244600 OSNPB_070244600 ENOG411DXIE TOL7,TOL6 F4KAU9,O80910 TOL7_ARATH,TOL6_ARATH TOM1-like protein 7,TOM1-like protein 6 FUNCTION: Might contribute to the loading of the ESCRT machinery. {ECO:0000305|PubMed:16488176}.,FUNCTION: Acts as a gatekeeper for degradative protein sorting to the vacuole. Plays a role in recognition of ubiquitinated PIN2 auxin carrier at the plasma membrane and further to its endocytic sorting. Binds ubiquitin in vitro (PubMed:24316203). Might contribute to the loading of the ESCRT machinery (Probable). {ECO:0000269|PubMed:24316203, ECO:0000305|PubMed:16488176}. 59768,72318 TOM1-like protein 7,TOM1-like protein 6 intracellular [GO:0005622]; membrane [GO:0016020]; intracellular protein transport [GO:0006886],cytoplasm [GO:0005737]; early endosome [GO:0005769]; early endosome membrane [GO:0031901]; multivesicular body [GO:0005771]; plasma membrane [GO:0005886]; ubiquitin binding [GO:0043130]; protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328] TISSUE SPECIFICITY: Preferentially expressed in flowers. {ECO:0000269|PubMed:24699223}.,TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:24699223}. locus:2180982;,locus:2057140; AT5G01760,AT2G38410 VHS and GAT domain containing protein expressed Os01g0825700 protein (Putative VHS2 protein),Os05g0475300 protein,Os05g0339000 protein (cDNA, clone: J100089K17, full insert sequence) Q5QMB2,Q65WV7,Q5WMP2 Q5QMB2_ORYSJ,Q65WV7_ORYSJ,Q5WMP2_ORYSJ Os01g0825700 OsJ_03922 OSNPB_010825700 P0439E11.17,Os05g0475300 OsJ_18907 OSNPB_050475300 P0486C01.18,Os05g0339000 OsJ_18115 OSJNBa0053E01.13 OSNPB_050339000 ENOG411DXID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dienelactone hydrolase family 'putative endo-1,31,4-beta-D-glucanase (Os05g0399200 protein) (cDNA clone:J033044O16, full insert sequence),'putative endo-1,31,4-beta-D-glucanase (Os05g0399100 protein) (cDNA clone:001-035-A04, full insert sequence) Q688M8,Q688M9 Q688M8_ORYSJ,Q688M9_ORYSJ Os05g0399200 OsJ_18466 OSNPB_050399200 P0605G01.11,Os05g0399100 OsJ_18465 OSNPB_050399100 P0605G01.10 ENOG411DXIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cpn10 Chaperonin (Os09g0438700 protein) (Putative chaperonin 21) (cDNA clone:001-040-D10, full insert sequence) (cDNA clone:J013002C22, full insert sequence) Q69QD5 Q69QD5_ORYSJ Os09g0438700 OsJ_29508 OSNPB_090438700 P0556H01.16 ENOG411DXIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Os11g0434400 protein,Os11g0435300 protein (Fragment),Os11g0435800 protein (Fragment),Os11g0434850 protein,Os11g0435100 protein A3CAY2,A0A0P0Y1Q8,A0A0P0Y207,A0A0P0Y2L3,A0A0P0Y211 A3CAY2_ORYSJ,A0A0P0Y1Q8_ORYSJ,A0A0P0Y207_ORYSJ,A0A0P0Y2L3_ORYSJ,A0A0P0Y211_ORYSJ Os11g0434400 OsJ_33786 OSNPB_110434400,Os11g0435300 OSNPB_110435300,Os11g0435800 OSNPB_110435800,Os11g0434850 OSNPB_110434850,Os11g0435100 OSNPB_110435100 ENOG411DXIA Q9FVR1 Q9FVR1_ARATH At1g32160/F3C3_6 (Beta-casein (DUF760)) (Uncharacterized protein F3C3.6) 45868 At1g32160/F3C3_6 (Beta-casein (DUF760)) (Uncharacterized protein F3C3.6) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2031760; AT1G32160 Protein of unknown function (DUF760) OSJNba0093F12.3 protein (Os04g0595100 protein) (Os04g0596300 protein) (cDNA clone:J013120J11, full insert sequence),Os04g0596300 protein (Fragment) Q0JAJ2,A0A0P0WEL7 Q0JAJ2_ORYSJ,A0A0P0WEL7_ORYSJ Os04g0596300 Os04g0595100 OsJ_16003 OSJNba0093F12.3 OSNPB_040596300,Os04g0596300 OSNPB_040596300 ENOG411E1FC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E1FG Q9FZ32 FB60_ARATH F-box protein At1g55000 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 24904 F-box protein At1g55000 protein ubiquitination [GO:0016567] locus:2011020; AT1G55000 F-box protein LysM domain containing protein, expressed (Os03g0699600 protein) (cDNA clone:J023049O05, full insert sequence) Q851T1 Q851T1_ORYSJ Os03g0699600 LOC_Os03g49250 Os03g0699600 OSJNBb0017F17.11 OSNPB_030699600 ENOG411DXI9 ALS3 Q9ZUT3 ALS3_ARATH Protein ALUMINUM SENSITIVE 3 (ABC transporter I family member 16) (ABC transporter ABCI.16) (AtABCI16) (ybbM homolog protein) Sensitive to aluminum-S. Howell-1997 FUNCTION: Required for aluminum (Al) resistance/tolerance, probably by translocating Al from sensitive tissues such as growing roots to tissues less sensisitive to the toxic effects of Al. {ECO:0000269|PubMed:12223767, ECO:0000269|PubMed:15659095, ECO:0000269|PubMed:8819866}. MISCELLANEOUS: ALS3 transcripts are mobile in the phloem sap. 29887 Protein ALUMINUM SENSITIVE 3 (ABC transporter I family member 16) (ABC transporter ABCI.16) (AtABCI16) (ybbM homolog protein) integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; vesicle membrane [GO:0012506]; ion transmembrane transporter activity [GO:0015075]; UDP-glucose transmembrane transporter activity [GO:0005460]; response to aluminum ion [GO:0010044] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:15659095}. locus:2049751; AT2G37330 Protein ALUMINUM SENSITIVE UPF0014 membrane protein STAR2 (Protein SENSITIVE TO ALUMINUM RHIZOTOXICITY 2),Os05g0119000 protein Q5W7C1,A0A0P0WHK8 STAR2_ORYSJ,A0A0P0WHK8_ORYSJ STAR2 Os05g0119000 LOC_Os05g02750 P0496H07.22,Os05g0119000 OSNPB_050119000 DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but strong inhibition of root elongation when grown in the presence of Al. {ECO:0000269|PubMed:19244140}. FUNCTION: Associates with STAR2 to form a functional transmembrane ABC transporter required for detoxification of aluminum (Al) in roots. Can specifically transport UDP-glucose. {ECO:0000269|PubMed:19244140}. ENOG411DXI8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Putrescine hydroxycinnamoyltransferase 2 (OsPHT2) (EC 2.3.1.-),Hydroxycinnamoyltransferase 4 (OsHCT4) (EC 2.3.1.-) (BAHD-like hydroxycinnamoyl transferase HCT4) (Glycerol hydroxycinnamoyl transferase) Q5SMQ0,Q5SMM6 PHT2_ORYSJ,HCT4_ORYSJ PHT2 Os06g0185300 LOC_Os06g08610 P0554A06.28,HCT4 Os06g0185500 LOC_Os06g08640 P0554A06.33 P0568D10.3 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to putrescine, to produce coumaroyl putrescine. {ECO:0000269|PubMed:27354554}.,FUNCTION: Hydroxycinnamoyl transferase that catalyzes in vitro the transfer of an acyl from p-coumaryol-CoA to glycerol or shikimate, to produce 2-O-p-coumaroyl glyceride or coumaroyl shikimate, respectively. Quercetin, glutarate, or malate do not serve as acyl acceptors in vitro. Can use feruloyl-CoA and caffeoyl-CoA as acyl donors. {ECO:0000269|PubMed:22285622}. ENOG411DXI7 Q9FYA0 Q9FYA0_ARATH AT5g13100/T19L5_60 (At5g13100) (Gap junction beta-4 protein) (Uncharacterized protein T19L5_60) 39305 AT5g13100/T19L5_60 (At5g13100) (Gap junction beta-4 protein) (Uncharacterized protein T19L5_60) locus:2179882; AT5G13100 NA Os01g0102500 protein (p0402A09.23 protein) (p0455C04.17 protein),Os04g0568050 protein Q93VY8,A0A0N7KJI9 Q93VY8_ORYSJ,A0A0N7KJI9_ORYSJ P0455C04.17 P0402A09.23 Os01g0102500 OsJ_00020 OSNPB_010102500 P0672D08.44,Os04g0568050 OSNPB_040568050 ENOG411DXI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B11 (Beta-expansin-11) (OsEXPB11) (OsaEXPb1.20) Q6H676 EXB11_ORYSJ EXPB11 Os02g0658800 LOC_Os02g44108 OJ1112_F09.30 P0708H12.9 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411DXI5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0226901 protein A0A0P0VUY2 A0A0P0VUY2_ORYSJ Os03g0226901 OSNPB_030226901 ENOG411DXI4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoredoxin Probable nucleoredoxin 2 (OsNrx2) (EC 1.8.1.8) Q0JIL1 NRX2_ORYSJ Os01g0794400 LOC_Os01g58194 OsJ_03740 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411DXI3 DWA2 Q6NPN9,Q8RWD8 DWA2_ARATH,Q8RWD8_ARATH WD repeat-containing protein DWA2 (Protein DWD HYPERSENSITIVE TO ABA 2),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At1g20540) DISRUPTION PHENOTYPE: Increased sensitivity to abscisic acid (ABA) and salt. {ECO:0000269|PubMed:20525848}. Sensitive to ABA and salt-X. Deng-2010 FUNCTION: Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling. May function as the substrate recognition module within this complex leading to ABI5 degradation. Functionally redundant with DWA1. {ECO:0000269|PubMed:20525848}. PATHWAY: Protein modification; protein ubiquitination. 39054,39036 WD repeat-containing protein DWA2 (Protein DWD HYPERSENSITIVE TO ABA 2),Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At1g20540) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein ubiquitination [GO:0016567],Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2014629;,locus:2030387; AT1G76260,AT1G20540 repeat-containing protein Os08g0554000 protein (Transducin / WD-40 repeat protein-like) (cDNA clone:J013153B06, full insert sequence),Os08g0554000 protein (Transducin / WD-40 repeat protein-like) (cDNA clone:001-047-C03, full insert sequence) Q6Z3F7,Q6Z3F8 Q6Z3F7_ORYSJ,Q6Z3F8_ORYSJ Os08g0554000 OJ1125_C01.14-1 Os08g0554000 OSJNBb0011H15.40-1 OSNPB_080554000,OJ1125_C01.14-2 Os08g0554000 OSJNBb0011H15.40-2 OSNPB_080554000 ENOG411DXI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor-like protein kinase HERK Os06g0334300 protein (Putative receptor-like protein kinase),Os06g0334300 protein (Fragment) Q5Z755,A0A0P0WW21 Q5Z755_ORYSJ,A0A0P0WW21_ORYSJ Os06g0334300 OSJNBa0012F14.16 OSNPB_060334300,Os06g0334300 OSNPB_060334300 ENOG411DXI1 F17O14.7 Q9C9Z6 Q9C9Z6_ARATH AT3g08600/F17O14_7 (Transmembrane protein, putative (DUF1191)) (Uncharacterized protein F17O14.7) 34732 AT3g08600/F17O14_7 (Transmembrane protein, putative (DUF1191)) (Uncharacterized protein F17O14.7) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2077803; AT3G08600 Protein of unknown function (DUF1191) Expressed protein (Os11g0118600 protein) (Os12g0117800 protein) (cDNA clone:J033072G17, full insert sequence),Os12g0117800 protein (Fragment) Q2QYI6,A0A0N7KTH4 Q2QYI6_ORYSJ,A0A0N7KTH4_ORYSJ Os11g0118600 LOC_Os11g02630 LOC_Os12g02550 Os11g0118600 Os12g0117800 OsJ_32742 OsJ_35018 OSNPB_110118600,Os12g0117800 OSNPB_120117800 ENOG411DXI0 ADK1,ADK2,MXI22.8 O82514,Q9FK35,A0A1P8BFG5,F4KAP2 KAD4_ARATH,KAD3_ARATH,A0A1P8BFG5_ARATH,F4KAP2_ARATH Adenylate kinase 4 (AK 4) (EC 2.7.4.3) (ATP-AMP transphosphorylase 4) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 4) (AMK4),Adenylate kinase 3 (AK 3) (EC 2.7.4.3) (ATP-AMP transphosphorylase 3) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 3) (AMK3),Adenylate kinase family protein,Adenylate kinase 1 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ARA:AT5G63400-MONOMER;,ARA:AT5G50370-MONOMER; R-ATH-499943; 2.7.4.3; 2.7.4.3 26932,27335,25509,20819 Adenylate kinase 4 (AK 4) (EC 2.7.4.3) (ATP-AMP transphosphorylase 4) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 4) (AMK4),Adenylate kinase 3 (AK 3) (EC 2.7.4.3) (ATP-AMP transphosphorylase 3) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 3) (AMK3),Adenylate kinase family protein,Adenylate kinase 1 mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; response to cadmium ion [GO:0046686],mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524]; copper ion binding [GO:0005507],adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524] locus:2167316;,locus:2177527; AT5G63400,AT5G50370 adenylate kinase NA NA NA NA NA NA NA ENOG411E1F0 Q9LFU4 Q9LFU4_ARATH AT5g15820/F14F8_200 (RING/U-box superfamily protein) (Uncharacterized protein F14F8_200) R-ATH-983168; 38559 AT5g15820/F14F8_200 (RING/U-box superfamily protein) (Uncharacterized protein F14F8_200) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2143176; AT5G15820 Zinc finger C3HC4 type (RING finger) Os02g0191500 protein (cDNA clone:002-113-C04, full insert sequence) Q69M03 Q69M03_ORYSJ Os02g0191500 Os02g0191500 OsJ_05708 OSNPB_020191500 P0453H10.9 ENOG411E1F1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS family transcription factor NA NA NA NA NA NA NA ENOG411E1F5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 Zinc finger CCCH domain-containing protein 34 (OsC3H34) Q6AT25 C3H34_ORYSJ Os05g0176400 LOC_Os05g08400 OsJ_016547 OsJ_17312 OSJNBa0029B02.4 ENOG411EFAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E9RM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ubiquitin carboxyl-terminal hydrolase Os01g0324125 protein (Os01g0325500 protein),Os08g0526600 protein,Os03g0842100 protein A0A0P0V265,A0A0P0XIW6,A0A0P0W5W1 A0A0P0V265_ORYSJ,A0A0P0XIW6_ORYSJ,A0A0P0W5W1_ORYSJ Os01g0324125 Os01g0325500 OSNPB_010324125 OSNPB_010325500,Os08g0526600 OSNPB_080526600,Os03g0842100 OSNPB_030842100 ENOG411E9RN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidase NA NA NA NA NA NA NA ENOG411E9RH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411E9RI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CemA family NA NA NA NA NA NA NA ENOG411E9RJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reversibly glycosylated polypeptide NA NA NA NA NA NA NA ENOG411E9RK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411E9RD IAA17 P93830 IAA17_ARATH Auxin-responsive protein IAA17 (Auxin response 3) (Indoleacetic acid-induced protein 17) Less sensitive to brassinolide than wildtype in terms of dark-grown hypocotyl elongation.,The mutant is less affected by brassinolide than wildtype with regard to inhibition of root elongation. Complete loss of root gravitropism-O. Leyser-1998 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. MISCELLANEOUS: Increased auxin response of mutants axr3-1 and axr3-3 may result from an increased stability of AXR3. 25288 Auxin-responsive protein IAA17 (Auxin response 3) (Indoleacetic acid-induced protein 17) nucleus [GO:0005634]; identical protein binding [GO:0042802]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; positive regulation of leaf senescence [GO:1900057]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] locus:2018374; AT1G04250 AUX/IAA family NA NA NA NA NA NA NA ENOG411E9RE TCP24 Q9C758 TCP24_ARATH Transcription factor TCP24 FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. 36377 Transcription factor TCP24 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; negative regulation of cell proliferation [GO:0008285]; positive regulation of development, heterochronic [GO:0045962]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}. locus:2009797; AT1G30210 TCP family transcription factor NA NA NA NA NA NA NA ENOG411E9RF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os12g0168100 protein (Fragment) Q0IPU4 Q0IPU4_ORYSJ Os12g0168100 Os12g0168100 OSNPB_120168100 ENOG411E9RG MUG13.4 Q93YN3 Q93YN3_ARATH Single-stranded nucleic acid binding R3H protein (Uncharacterized protein At5g05100) (Uncharacterized protein MUG13.4) 36549 Single-stranded nucleic acid binding R3H protein (Uncharacterized protein At5g05100) (Uncharacterized protein MUG13.4) nucleic acid binding [GO:0003676] locus:2175279; AT5G05100 Nucleic acid binding NA NA NA NA NA NA NA ENOG411E9RA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9RB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aldose 1-epimerase NA NA NA NA NA NA NA ENOG411E9RC Q9FJ36 Q9FJ36_ARATH Myosin heavy chain-like (Myosin heavy chain-like protein) 62736 Myosin heavy chain-like (Myosin heavy chain-like protein) locus:2152975; AT5G41780 NA NA NA NA NA NA NA NA ENOG411E9RX Q3EA00 FB235_ARATH Putative F-box protein At4g17565 44218 Putative F-box protein At4g17565 locus:2129196; AT4G17565 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E9RY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription initiation factor TFIID subunit A NA NA NA NA NA NA NA ENOG411E9RZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E9RT FIM5,FIM4 Q9FKI0,Q9SJ84 FIMB5_ARATH,FIMB4_ARATH Fimbrin-5 (AtFIM5) (Fimbrin-like protein 2) (Fimbrin5),Fimbrin-4 (AtFIM4) (Fimbrin4) DISRUPTION PHENOTYPE: Delayed pollen germination and inhibition of pollen tube growth due to the disorganization and redistribution of actin filaments. {ECO:0000269|PubMed:21098731}. fim5 mutant exhibits delayed pollen germination and retarded pollen tube growth. FIM5 loss-of-function leads to redistribution of actin cytoskeleton in pollen grains and disorganization of actin filaments in pollen tubes. FUNCTION: Cross-links actin filaments (F-actin) in a calcium independent manner. Induces the formation of actin bundles. Stabilizes and prevents F-actin depolymerization mediated by latrunculin B (LatB). {ECO:0000269|PubMed:21098731}.,FUNCTION: Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus. {ECO:0000250|UniProtKB:Q7G188}. MISCELLANEOUS: Cross-links actin with a constant of dissociation of 0.71 uM. {ECO:0000269|PubMed:21098731}. 76758,73443 Fimbrin-5 (AtFIM5) (Fimbrin-like protein 2) (Fimbrin5),Fimbrin-4 (AtFIM4) (Fimbrin4) actin filament [GO:0005884]; actin filament bundle [GO:0032432]; cytosol [GO:0005829]; actin filament binding [GO:0051015]; actin crosslink formation [GO:0051764]; actin cytoskeleton organization [GO:0030036]; actin filament bundle assembly [GO:0051017]; actin filament network formation [GO:0051639]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860],actin filament [GO:0005884]; actin filament bundle [GO:0032432]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; actin filament binding [GO:0051015]; actin crosslink formation [GO:0051764]; actin filament bundle assembly [GO:0051017]; actin filament network formation [GO:0051639] TISSUE SPECIFICITY: Expressed in mature pollen. {ECO:0000269|PubMed:21098731}. locus:2177291;,locus:2049158; AT5G35700,AT2G04750 CH NA NA NA NA NA NA NA ENOG411E9RU T4C21_110,T12E18_100,MUL8.1 Q9LZZ3,O04542,Q9M2U6,O04540,Q9FM00,B3H709 Q9LZZ3_ARATH,O04542_ARATH,Q9M2U6_ARATH,O04540_ARATH,Q9FM00_ARATH,B3H709_ARATH Uncharacterized protein T4C21_110,F20P5.24 protein (Transmembrane protein, putative (DUF1163)),Uncharacterized protein T12E18_100,F20P5.22 protein (Transmembrane protein, putative (DUF1163)),Gb|AAB61110.1 (Transmembrane protein, putative (DUF1163)),Transmembrane protein, putative (DUF1163) 24888,25753,11951,21597,24155,23905 Uncharacterized protein T4C21_110,F20P5.24 protein (Transmembrane protein, putative (DUF1163)),Uncharacterized protein T12E18_100,F20P5.22 protein (Transmembrane protein, putative (DUF1163)),Gb|AAB61110.1 (Transmembrane protein, putative (DUF1163)),Transmembrane protein, putative (DUF1163) integral component of membrane [GO:0016021] locus:2101781;,locus:2020618;,locus:2096149;,locus:2020588;,locus:2175738; AT3G60700,AT1G70020,AT3G54410,AT1G70040,AT5G39330 Protein of unknown function (DUF1163) NA NA NA NA NA NA NA ENOG411E9RV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Source UniProtKB Os10g0185100 protein,Os08g0271600 protein Q0IYP0,A0A0P0XDR7 Q0IYP0_ORYSJ,A0A0P0XDR7_ORYSJ Os10g0185100 OSNPB_100185100,Os08g0271600 OSNPB_080271600 ENOG411E9RW Q9SZ65 Q9SZ65_ARATH SNARE associated Golgi protein family (Uncharacterized protein At4g12000) (Uncharacterized protein F16J13.70) 34438 SNARE associated Golgi protein family (Uncharacterized protein At4g12000) (Uncharacterized protein F16J13.70) integral component of membrane [GO:0016021]; response to oxidative stress [GO:0006979] locus:2118096; AT4G12000 SNARE associated Golgi protein NA NA NA NA NA NA NA ENOG411E9RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E9RQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copine NA NA NA NA NA NA NA ENOG411E9RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0223400 protein (Fragment),Os11g0223201 protein (Fragment) Q0ITS2,A0A0N7KSM9 Q0ITS2_ORYSJ,A0A0N7KSM9_ORYSJ Os11g0223400 Os11g0223400 OSNPB_110223400,Os11g0223201 OSNPB_110223201 ENOG411E9RS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cell division protein FtsA NA NA NA NA NA NA NA ENOG411E9R8 AtbZIP58 Q9LMY8 Q9LMY8_ARATH Basic leucine-zipper 58 (F13B4.8 protein) (F21F23.3 protein) (Putative bZIP transcription factor) (Uncharacterized protein At1g13600) 22873 Basic leucine-zipper 58 (F13B4.8 protein) (F21F23.3 protein) (Putative bZIP transcription factor) (Uncharacterized protein At1g13600) protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2009932; AT1G13600 AT1G13600 (E 4e-087) AtbZIP58 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) NA NA NA NA NA NA NA ENOG411E9R9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411E9R4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411E9R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9R6 F4JKD9 F4JKD9_ARATH Eukaryotic aspartyl protease family protein 39230 Eukaryotic aspartyl protease family protein aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2120688; AT4G22050 aspartyl protease family protein NA NA NA NA NA NA NA ENOG411E9R7 IQD1 Q9SF32,F4J1A4 IQD1_ARATH,F4J1A4_ARATH Protein IQ-DOMAIN 1,IQ-domain 1 FUNCTION: Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level (PubMed:15960618, PubMed:23204523). Recruits KLCR1 and calmodulin proteins to microtubules, thus being a potential scaffold in cellular signaling and trafficking (PubMed:23204523). {ECO:0000269|PubMed:15960618, ECO:0000269|PubMed:23204523}. MISCELLANEOUS: IQD1 overexpression leads to increased resistance against herbivory by generalist chewing and phloem-feeding insects. {ECO:0000269|PubMed:15960618}. 50540,52224 Protein IQ-DOMAIN 1,IQ-domain 1 cytoplasm [GO:0005737]; microtubule [GO:0005874]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; microtubule binding [GO:0008017],nucleus [GO:0005634]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; glucosinolate biosynthetic process [GO:0019761] TISSUE SPECIFICITY: Expressed in roots, flowers, stems, siliques, inflorescence stems and whole shoots. Restricted to the vascular bundles. {ECO:0000269|PubMed:15960618}. locus:2075024; AT3G09710 NA NA NA NA NA NA NA NA ENOG411E9R0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Voltage gated chloride channel NA NA NA NA NA NA NA ENOG411E9R1 CALS6,GSL11 Q9LYS6,A0A1I9LPR4 CALS6_ARATH,A0A1I9LPR4_ARATH Putative callose synthase 6 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 11),Glucan synthase-like 11 FUNCTION: Probably involved in callose synthesis, but not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals. {ECO:0000269|PubMed:14555698}. 2.4.1.34 223514,189148 Putative callose synthase 6 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 11),Glucan synthase-like 11 1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; regulation of cell shape [GO:0008360],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075] locus:2077720; AT3G59100 Vta1 like NA NA NA NA NA NA NA ENOG411E9R2 FDM3 Q9LHB1,A0A1I9LNP6,A0A1I9LNP4 FDM3_ARATH,A0A1I9LNP6_ARATH,A0A1I9LNP4_ARATH Factor of DNA methylation 3,XH/XS domain-containing protein FUNCTION: Acts in association with FDM4 and FDM5 for RNA-directed DNA methylation (RdDM). {ECO:0000269|PubMed:22302148}. 74229,67575,74130 Factor of DNA methylation 3,XH/XS domain-containing protein nucleolar ribonuclease P complex [GO:0005655]; RNA-directed DNA methylation [GO:0080188],gene silencing by RNA [GO:0031047] locus:2101237; AT3G12550 XS zinc finger domain NA NA NA NA NA NA NA ENOG411E9R3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum Os05g0318600 protein Q5W6V7 Q5W6V7_ORYSJ Os05g0318600 OsJ_18046 OSJNBb0059K16.6 OSNPB_050318600 ENOG411EDPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EAG8 SRK2E,SRK2I Q940H6,Q39193 SRK2E_ARATH,SRK2I_ARATH Serine/threonine-protein kinase SRK2E (EC 2.7.11.1) (Protein OPEN STOMATA 1) (SNF1-related kinase 2.6) (SnRK2.6) (Serine/threonine-protein kinase OST1),Serine/threonine-protein kinase SRK2I (EC 2.7.11.1) (OST1-kinase-like 2) (Protein ATHPROKIN B) (SNF1-related kinase 2.3) (SnRK2.3) DISRUPTION PHENOTYPE: Impaired ozone-triggered rapid transient decrease (RTD) in stomatal conductance (PubMed:20128877). Impaired induction of MKKK18 activity after 90 minutes of abscisic acid (ABA) treatment (PubMed:26443375). {ECO:0000269|PubMed:20128877, ECO:0000269|PubMed:26443375}. Impaired ability to close stomata in drought,Preopened stomata fail to close in response to ABA consistent with the inability to reduce water loss upon drought.,The mutation has no effect on the ability of preopened stomata to respond to light or CO2-free air but the mutant remain impared in the ABA-inhibition of light-induced stomatal opening.,In control experiments multiplication of the bacterial cor mutant (in Col and Ler) at the surface of leaves was greatly reduced compared whereas it multiplied efficiently when infiltrated directly into the apoplast (and caused typical disease symptoms incluring necrosis and chlorosis). In the surface-inoculated mutant the bacterial cor mutant multiplied efficiently.,Stomatal closure could not be induced by the bacterial PAMP (pathogen-associated molecular pattern) molecules flg2 (a biologically active peptide derived from flagellin) or LPS (lipopolysaccharide).,No change in effect of ABA inhibition of seed germination.,While ABA induces the closing of stomata in wildtype plants the stomata of the mutant remain open.,Wilty phenotype against rapid humudity decrease.,snrk2.2 snrk2.3 was found to be ABA-insensitive in seed germination and early seedling growth snrk2.2 snrk2.3 seeds showed green cotyledons at 5 d after sowing (non of the wild-type seeds had germinated at this time) snrk2.2 snrk2.3 had decreased seed dormancy snrk2.2 snrk2.3 was insensitive to the stimulating effect of low ABA concentration (<1 uM)on root growth snrk2.2 snrk2.3 had a greatly reduced level of a 42-kD kinase activity capable of phosphorylating peptides from ABF (for ABA Response Element Binding Factor) transcription factors Reduced stomatal closing under drought-J. Giraudat-2002,Slightly reduced seed dormancy; Abnormal stomata; Insensitive to ABA -J. Zhu-2007 FUNCTION: Activator of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomata closure in response to drought, plant pathogens, or decreases in atmospheric relative humidity (RH). Involved in the resistance to drought by avoiding water loss. Required for the stomata closure mediated by pathogen-associated molecular pattern (PAMPs) (e.g. flg22 and LPS) of pathogenic bacteria such as P.syringae pv. tomato (Pst) and E.coli O157:H7. As a plant defense process, stomata are closed transiently in order to limit invaders, but actively reopened by bacteria after a few hours; virulent strains (e.g. Pst DC3000) are more efficient than avirulent strains (e.g. Pst DC3000 AvrRpt2) in reopening stomata. Mediates the phosphorylation and activation of the S-type anion efflux channel SLAC1, and thus promotes stomata closure. Essential for stomatal closure in response to reactive oxygen species (ROS). Promotes MAPKKK18 activity upon abscisic acid (ABA) treatment (PubMed:26443375). {ECO:0000269|PubMed:12047634, ECO:0000269|PubMed:12468729, ECO:0000269|PubMed:12514244, ECO:0000269|PubMed:15064385, ECO:0000269|PubMed:16365038, ECO:0000269|PubMed:16682349, ECO:0000269|PubMed:16766677, ECO:0000269|PubMed:16959575, ECO:0000269|PubMed:17307925, ECO:0000269|PubMed:19955405, ECO:0000269|PubMed:19955427, ECO:0000269|PubMed:20128877, ECO:0000269|PubMed:26443375}.,FUNCTION: Together with SRK2D, key component and activator of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as seed germination, Pro accumulation, root growth inhibition, dormancy and seedling growth, and, to a lesser extent, stomatal closure. {ECO:0000269|PubMed:17307925}. 2.7.11.1 41048,41085 Serine/threonine-protein kinase SRK2E (EC 2.7.11.1) (Protein OPEN STOMATA 1) (SNF1-related kinase 2.6) (SnRK2.6) (Serine/threonine-protein kinase OST1),Serine/threonine-protein kinase SRK2I (EC 2.7.11.1) (OST1-kinase-like 2) (Protein ATHPROKIN B) (SNF1-related kinase 2.3) (SnRK2.3) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein phosphatase binding [GO:0019903]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; defense response to bacterium [GO:0042742]; growth [GO:0040007]; intracellular signal transduction [GO:0035556]; leaf development [GO:0048366]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; protein autophosphorylation [GO:0046777]; regulation of anion channel activity [GO:0010359]; regulation of reactive oxygen species metabolic process [GO:2000377]; regulation of stomatal movement [GO:0010119]; regulation of stomatal opening [GO:1902456]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118]; sucrose metabolic process [GO:0005985]; triglyceride biosynthetic process [GO:0019432]; unsaturated fatty acid biosynthetic process [GO:0006636],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737]; response to gibberellin [GO:0009739]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers, stems, and roots, but restricted to guard cells and vascular tissue. {ECO:0000269|PubMed:12468729, ECO:0000269|PubMed:15292193, ECO:0000269|PubMed:16766677, ECO:0000269|PubMed:17307925}.,TISSUE SPECIFICITY: Expressed at low levels in seeds, seedlings, roots (especially in tips), stems, leaves, shoots, flowers and siliques. {ECO:0000269|PubMed:15292193, ECO:0000269|PubMed:17307925}. locus:2118929;,locus:2174999; AT4G33950,AT5G66880 serine threonine-protein kinase Serine/threonine-protein kinase SAPK10 (EC 2.7.11.1) (Osmotic stress/abscisic acid-activated protein kinase 10) (stress-activated protein kinase 10) (OsSAPK10) Q75H77 SAPKA_ORYSJ SAPK10 Os03g0610900 LOC_Os03g41460 OsJ_11716 OSJNBb0007E22.11 FUNCTION: May play a role in signal transduction of hyperosmotic response. Together with PYL10, PP2C53 and SAPK8, may form an abscisic acid (ABA) signaling module involved in stress response (PubMed:26491145). Together with PYL3 and PP2C50, may form an ABA signaling module involved in stress response (PubMed:28827170). {ECO:0000269|PubMed:26491145, ECO:0000269|PubMed:28827170}. ENOG411EAG5 F15N18_200 Q9LYD1,A0A1P8BH37,F4JXX5 Q9LYD1_ARATH,A0A1P8BH37_ARATH,F4JXX5_ARATH Exostosin family protein (Uncharacterized protein F15N18_200),Exostosin family protein ARA:AT5G11610-MONOMER; 63090,39991,51994 Exostosin family protein (Uncharacterized protein F15N18_200),Exostosin family protein integral component of membrane [GO:0016021] locus:2144231; AT5G11610 exostosin family NA NA NA NA NA NA NA ENOG411EAGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EAGM ATL17 Q8LF65 ATL17_ARATH RING-H2 finger protein ATL17 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL17) FUNCTION: May be involved in the early steps of the plant defense signaling pathway. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 26319 RING-H2 finger protein ATL17 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL17) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; defense response [GO:0006952]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] AT4G15975 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EAGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7-methylxanthosine synthase 1-like NA NA NA NA NA NA NA ENOG411EAGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os03g0632600 protein A0A0N7KHP3 A0A0N7KHP3_ORYSJ Os03g0632600 OSNPB_030632600 ENOG411EAGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PH domain Os03g0704700 protein A0A0P0W1Z3 A0A0P0W1Z3_ORYSJ Os03g0704700 OSNPB_030704700 ENOG411EAGE XI-C,XI-E,XIC,XIE F4HXP9,F4HWY6,A0A1P8APW4,A0A1P8ANP9 MYO9_ARATH,MYO11_ARATH,A0A1P8APW4_ARATH,A0A1P8ANP9_ARATH Myosin-9 (Myosin XI C) (AtXIC),Myosin-11 (Myosin XI E) (AtXIE),Myosin family protein with Dil domain-containing protein FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Involved in trafficking of Golgi stacks and mitochondria. {ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:21914656}.,FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Involved in trafficking of Golgi stacks, mitochondria and peroxisomes. {ECO:0000269|PubMed:18503043, ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:21914656}. 174626,173610,173499,173253 Myosin-9 (Myosin XI C) (AtXIC),Myosin-11 (Myosin XI E) (AtXIE),Myosin family protein with Dil domain-containing protein myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; microfilament motor activity [GO:0000146]; motor activity [GO:0003774]; actin filament organization [GO:0007015]; actin filament-based movement [GO:0030048]; organelle localization [GO:0051640]; pollen tube growth [GO:0009860],cytoplasm [GO:0005737]; myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; microfilament motor activity [GO:0000146]; motor activity [GO:0003774]; actin filament organization [GO:0007015]; actin filament-based movement [GO:0030048]; organelle localization [GO:0051640]; pollen tube growth [GO:0009860],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774] locus:2025535;,locus:2199449; AT1G08730,AT1G54560 Myosin N-terminal SH3-like domain Os06g0488200 protein (Putative myosin heavy chain PCR43),Os06g0488200 protein (Fragment),Os12g0633700 protein Q67VX5,A0A0P0WWU7,A0A0P0YCR6 Q67VX5_ORYSJ,A0A0P0WWU7_ORYSJ,A0A0P0YCR6_ORYSJ Os06g0488200 Os06g0488200 OSNPB_060488200 P0583E12.11,Os06g0488200 OSNPB_060488200,Os12g0633700 OSNPB_120633700 ENOG411EAGC F4HZ48 F4HZ48_ARATH Forkhead-associated (FHA) domain-containing protein 63270 Forkhead-associated (FHA) domain-containing protein vacuolar membrane [GO:0005774] locus:2005644; AT1G75530 FHA NA NA NA NA NA NA NA ENOG411EAGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os09g0557200 protein,Os09g0558600 protein,Os09g0557301 protein,Os09g0557100 protein,Os07g0642050 protein,Os09g0557300 protein,Os04g0307400 protein A3C1E7,A0A0P0XRK1,A0A0P0XR43,A0A0P0XQ84,A0A0P0XA56,A0A0P0XQ62,A0A0P0W8P9 A3C1E7_ORYSJ,A0A0P0XRK1_ORYSJ,A0A0P0XR43_ORYSJ,A0A0P0XQ84_ORYSJ,A0A0P0XA56_ORYSJ,A0A0P0XQ62_ORYSJ,A0A0P0W8P9_ORYSJ Os09g0557200 OsJ_30304 OSNPB_090557200,Os09g0558600 OSNPB_090558600,Os09g0557301 OSNPB_090557301,Os09g0557100 OSNPB_090557100,Os07g0642050 OSNPB_070642050,Os09g0557300 OSNPB_090557300,Os04g0307400 OSNPB_040307400 ENOG411E1AF PCMP-E101 O49399 PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840 60842 Pentatricopeptide repeat-containing protein At4g18840 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2117084; AT4G18840 repeat-containing protein NA NA NA NA NA NA NA ENOG411EAGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0305450 protein A0A0P0VXB7 A0A0P0VXB7_ORYSJ Os03g0305450 OSNPB_030305450 ENOG411EAGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EAGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAF domain CBL-interacting protein kinase 33 (EC 2.7.11.1) (OsCIPK33),CBL-interacting protein kinase 32 (EC 2.7.11.1) (OsCIPK32),Non-specific serine/threonine protein kinase (EC 2.7.11.1) (Fragment) Q2RAX3,Q2QY53,A0A0P0XYJ3 CIPKX_ORYSJ,CIPKW_ORYSJ,A0A0P0XYJ3_ORYSJ CIPK33 Os11g0134300 LOC_Os11g03970,CIPK32 Os12g0132200 LOC_Os12g03810,Os11g0134300 OSNPB_110134300 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411EAGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytosol aminopeptidase family N-terminal domain NA NA NA NA NA NA NA ENOG411EAGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411EDP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0460500 protein) (cDNA clone:J023055H02, full insert sequence) Q337M9 Q337M9_ORYSJ Os10g0460500 LOC_Os10g32270 Os10g0460500 OSNPB_100460500 ENOG411EFK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UDP-Glycosyltransferase NA NA NA NA NA NA NA ENOG411EFK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0509100 protein) (cDNA clone:J023024P20, full insert sequence) Q2QQ25 Q2QQ25_ORYSJ Os12g0509100 LOC_Os12g32470 Os12g0509100 OSNPB_120509100 ENOG411EFK2 RALFL22 Q9MA62 RLF22_ARATH Protein RALF-like 22 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 13030 Protein RALF-like 22 apoplast [GO:0048046]; intracellular [GO:0005622]; plasmodesma [GO:0009506]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] locus:2079787; AT3G05490 ralf-like 22 NA NA NA NA NA NA NA ENOG411EFK3 ERF11 Q9C5I3,A0A1P8AP34 ERF76_ARATH,A0A1P8AP34_ARATH Ethylene-responsive transcription factor 11 (AtERF11) (Ethylene-responsive element-binding factor 11) (EREBP-11),ERF domain protein 11 FUNCTION: Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. 18612,23214 Ethylene-responsive transcription factor 11 (AtERF11) (Ethylene-responsive element-binding factor 11) (EREBP-11),ERF domain protein 11 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell division [GO:0051301]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2032500; AT1G28370 ERF domain protein 11 NA NA NA NA NA NA NA ENOG411EFK4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0041 NA NA NA NA NA NA NA ENOG411EFK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0137600 protein,Os01g0136500 protein Q5ZC60,A2ZP03 Q5ZC60_ORYSJ,A2ZP03_ORYSJ Os01g0137600 OsJ_00295 OSNPB_010137600 P0443D08.27,Os01g0136500 OsJ_00283 OSNPB_010136500 ENOG411EFK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: S-phase kinase--associated protein OSJNBa0093O08.6 protein (Os04g0616800 protein) Q7XTP1 Q7XTP1_ORYSJ Os04g0616800 Os04g0616800 OsJ_16164 OSJNBa0093O08.6 OSNPB_040616800 ENOG411EFK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transport factor 2 (NTF2) domain NA NA NA NA NA NA NA ENOG411EFKS ERF116 Q8GW17 EF116_ARATH Ethylene-responsive transcription factor ERF116 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 31992 Ethylene-responsive transcription factor ERF116 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; pollen development [GO:0009555]; transcription, DNA-templated [GO:0006351] locus:2031245; AT1G25470 NA NA NA NA NA NA NA NA ENOG411EFKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EFKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family NA NA NA NA NA NA NA ENOG411EFKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0124100 protein) (cDNA clone:J023011O11, full insert sequence) Q7G607 Q7G607_ORYSJ Os10g0124100 LOC_Os10g03550 Os10g0124100 OsJ_30579 OSJNAa0049K09.18 OSJNBa0056A20.6 OSNPB_100124100 ENOG411EFKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411EFKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EFKA Q9LK19,F4J0F5 Q9LK19_ARATH,F4J0F5_ARATH Paired amphipathic helix Sin3-like protein,Paired amphipathic helix SIN3-like protein Sepal-like petals; Low penetrance of extra flowers forming at base of sepals-M. Yanofsky-2001 43854,40903 Paired amphipathic helix Sin3-like protein,Paired amphipathic helix SIN3-like protein chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122] locus:2087203;,locus:2090744; AT3G24260,AT3G28870 Has 139 Blast hits to 137 proteins in 48 species Archae - 5 NA NA NA NA NA NA NA ENOG411EFKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EFKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411EFKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0020I02.11 protein (Os04g0348000 protein) (cDNA clone:J033138G07, full insert sequence) Q7XS72 Q7XS72_ORYSJ Os04g0348000 OsJ_14360 OSJNBa0020I02.11 OSNPB_040348000 ENOG411EFKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os12g0112900 protein,Os11g0113400 protein B9GBL1,A0A0P0XYA8 B9GBL1_ORYSJ,A0A0P0XYA8_ORYSJ Os12g0112900 OsJ_35042 OSNPB_120112900,Os11g0113400 OSNPB_110113400 ENOG411EFKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411EFKG BIM1 Q9LEZ3,F4K9L3,F4K9L4,A0A1P8BBP3,F4K9L2,A0A1P8BBN4 BIM1_ARATH,F4K9L3_ARATH,F4K9L4_ARATH,A0A1P8BBP3_ARATH,F4K9L2_ARATH,A0A1P8BBN4_ARATH Transcription factor BIM1 (BES1-interacting Myc-like protein 1) (Basic helix-loop-helix protein 46) (AtbHLH46) (bHLH 46) (Transcription factor EN 126) (bHLH transcription factor bHLH046),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein Embryo defective; Cotyledon; Low penetrance of patterning defects and seedling lethality-W. Werr-2009 FUNCTION: Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. 58710,59116,45417,59244,58888,58582 Transcription factor BIM1 (BES1-interacting Myc-like protein 1) (Basic helix-loop-helix protein 46) (AtbHLH46) (bHLH 46) (Transcription factor EN 126) (bHLH transcription factor bHLH046),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; positive regulation of shade avoidance [GO:1902448]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}. locus:2181549; AT5G08130 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EFKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFKK GRXS1,GRXS6 Q9SA68,Q9LYC8 GRXS1_ARATH,GRXS6_ARATH Monothiol glutaredoxin-S1 (AtGrxS1) (Protein ROXY 16),Monothiol glutaredoxin-S6 (AtGrxS6) (Protein ROXY 17) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 11068,11111 Monothiol glutaredoxin-S1 (AtGrxS1) (Protein ROXY 16),Monothiol glutaredoxin-S6 (AtGrxS6) (Protein ROXY 17) cytoplasm [GO:0005737]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2007554;,locus:2099157; AT1G03020,AT3G62930 glutaredoxin family NA NA NA NA NA NA NA ENOG411EFKM PR1 Q39187,Q9ZPG2,F4JZQ4 Q39187_ARATH,Q9ZPG2_ARATH,F4JZQ4_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis-related protein 1) (Pathogenesis-related protein 1, 18.9K) (Putative pathogenesis-related protein 1, 18.9K),At4g07820 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (F5K24.6 protein) (Putative pathogenesis-related protein),CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein 18953,17746,18656 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Pathogenesis-related protein 1) (Pathogenesis-related protein 1, 18.9K) (Putative pathogenesis-related protein 1, 18.9K),At4g07820 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) (F5K24.6 protein) (Putative pathogenesis-related protein),CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein extracellular region [GO:0005576] locus:2134283;,locus:2126169;,locus:2180662; AT4G33710,AT4G07820,AT5G26130 SCP NA NA NA NA NA NA NA ENOG411EFKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411DZXN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family Os08g0260600 protein (Putative senescence-associated protein) (cDNA clone:002-144-B12, full insert sequence) Q6Z5Z9 Q6Z5Z9_ORYSJ Os08g0260600 B1063H10.10 OSNPB_080260600 ENOG411E51U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0193500 protein (cDNA clone:J033031K13, full insert sequence) A3A426 A3A426_ORYSJ Os02g0193500 OsJ_05724 OSNPB_020193500 ENOG411DZXD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA type I inositol-145-trisphosphate 5-phosphatase Os01g0183300 protein (Putative inositol polyphosphate 5-phosphatase) Q5VRY7 Q5VRY7_ORYSJ Os01g0183300 OsJ_00647 OSNPB_010183300 P0489A01.10 ENOG411DZXX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0639800 protein (Ring domain containing protein-like) (cDNA clone:001-205-F11, full insert sequence) (cDNA clone:J013063D05, full insert sequence) Q6H7E5 Q6H7E5_ORYSJ P0010C01.23-1 Os02g0639800 OsJ_07675 OSNPB_020639800 ENOG411EKXM SPP Q9FIH8,A0A1P8BEG1 SPP_ARATH,A0A1P8BEG1_ARATH Stromal processing peptidase, chloroplastic (EC 3.4.24.-) (Chloroplast processing enzyme),Insulinase (Peptidase family M16) family protein DISRUPTION PHENOTYPE: Embryo lethality. {ECO:0000269|PubMed:21857988}. FUNCTION: Cleaves presequences (transit peptides) from chloroplastic protein precursors (PubMed:12795700). Initially recognizes a precursor by binding to the C-terminus of its transit peptide and then removes the transit peptide in a single endoproteolytic step. In a next step, pursues the cleavage of transit peptide to a subfragment form (By similarity). {ECO:0000250|UniProtKB:Q40983, ECO:0000269|PubMed:12795700}. MISCELLANEOUS: RNAi plants were almost all seedling lethals. Surviving plants exhibited slower shoot and root growth, and grossly aberrant leaf morphology. They also displayed defects in chloroplast protein import. {ECO:0000269|PubMed:12795700}. 3.4.21.102; 3.4.24.- 140607,120723 Stromal processing peptidase, chloroplastic (EC 3.4.24.-) (Chloroplast processing enzyme),Insulinase (Peptidase family M16) family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; embryo development ending in seed dormancy [GO:0009793],catalytic activity [GO:0003824]; metal ion binding [GO:0046872] locus:2162336; AT5G42390 Insulinase (Peptidase family M16) Stromal processing peptidase, chloroplastic (EC 3.4.24.-) Q69TY5 SPP_ORYSJ SPP Os06g0625400 LOC_Os06g41990 OSJNBa0029G06.38-1 OSJNBa0072A21.7-1 FUNCTION: Cleaves presequences (transit peptides) from chloroplastic protein precursors. Initially recognizes a precursor by binding to the C-terminus of its transit peptide and then removes the transit peptide in a single endoproteolytic step. In a next step, pursues the cleavage of transit peptide to a subfragment form. {ECO:0000250|UniProtKB:Q40983}. ENOG411EKXN Q9FJT9 PQQL_ARATH Zinc protease PQQL-like (EC 3.4.24.-) 3.4.24.- 107981 Zinc protease PQQL-like (EC 3.4.24.-) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; plastid [GO:0009536]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222] locus:2165081; AT5G56730 zinc protease pqqL-like Os01g0558850 protein A0A0P0V430 A0A0P0V430_ORYSJ Os01g0558850 OSNPB_010558850 ENOG411EKXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mad3_BUB1_I NA NA NA NA NA NA NA ENOG411EKXI BUBR1 O22806 BUBR1_ARATH Mitotic spindle checkpoint protein BUBR1 (BUB1-related protein 1) FUNCTION: Essential component of the mitotic checkpoint. Required for normal mitosis progression. The mitotic checkpoint delays anaphase until all chromosomes are properly attached to the mitotic spindle. One of its checkpoint functions may be to inhibit the activity of the anaphase-promoting complex/cyclosome (APC/C) by blocking the binding of CDC20 to APC/C (By similarity). {ECO:0000250, ECO:0000269|PubMed:19710914}. 45374 Mitotic spindle checkpoint protein BUBR1 (BUB1-related protein 1) chromocenter [GO:0010369]; condensed nuclear chromosome kinetochore [GO:0000778]; cytoplasm [GO:0005737]; kinetochore [GO:0000776]; kinetochore microtubule [GO:0005828]; microtubule organizing center [GO:0005815]; spindle microtubule [GO:0005876]; protein kinase activity [GO:0004672]; meiotic sister chromatid cohesion, centromeric [GO:0051754]; mitotic spindle assembly checkpoint [GO:0007094] TISSUE SPECIFICITY: Expressed in actively dividing tissues, early in organ development, in young leaves, lateral root primordia and root meristems. {ECO:0000269|PubMed:19710914}. locus:2050977; AT2G33560 Serine threonine-protein kinase Os02g0193600 protein (Putative mitotic spindle checkpoint component mad3) (cDNA clone:001-017-E12, full insert sequence),Os04g0454900 protein Q7F8R8,Q0JCR2 Q7F8R8_ORYSJ,Q0JCR2_ORYSJ P0437H03.124 Os02g0193600 OSNPB_020193600,Os04g0454900 Os04g0454900 OSNPB_040454900 ENOG411EKXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box kelch-repeat protein NA NA NA NA NA NA NA ENOG411EKXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKXD A2RVQ8,F4JHD6,F4JHD7,F4JHD8 A2RVQ8_ARATH,F4JHD6_ARATH,F4JHD7_ARATH,F4JHD8_ARATH At4g00560 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein R-ATH-156581; 28187,36151,36643,21900 At4g00560 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein locus:2127028; AT4G00560 Methionine adenosyltransferase (RAP Annotation release2) dTDP-4-dehydrorhamnose reductase family protein (Os02g0826200 protein) (Putative dTDP-4-dehydrorhamnose reductase) Q6K7R8 Q6K7R8_ORYSJ Os02g0826200 Os02g0826200 OSNPB_020826200 P0452F04.15 ENOG411EKXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0190900 protein) Q8H7M5 Q8H7M5_ORYSJ OJ1217B09.21 Os03g0190900 LOC_Os03g09090 OSNPB_030190900 ENOG411EKXF MWD22.9 Q9LU59 Q9LU59_ARATH Gb|AAD46013.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) (Uncharacterized protein At5g51150) 59138 Gb|AAD46013.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) (Uncharacterized protein At5g51150) integral component of membrane [GO:0016021]; peroxisome [GO:0005777] locus:2176247; AT5G51150 NA Os07g0494900 protein (Fragment) A0A0N7KNG9 A0A0N7KNG9_ORYSJ Os07g0494900 OSNPB_070494900 ENOG411EKXG G2484-1 F4JP43,A0A1P8B770 F4JP43_ARATH,A0A1P8B770_ARATH G2484-1 protein 218071,214199 G2484-1 protein plasmodesma [GO:0009506] locus:2130878; AT4G17330 Agenet domain Os10g0559700 protein (Fragment),Os10g0559600 protein (Fragment) Q0IVQ5,Q0IVQ6,A0A0P0XX58 Q0IVQ5_ORYSJ,Q0IVQ6_ORYSJ,A0A0P0XX58_ORYSJ Os10g0559700 OSNPB_100559700,Os10g0559600 OSNPB_100559600 ENOG411EKXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor S-II (TFIIS) central domain NA NA NA NA NA NA NA ENOG411EKXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPOC domain Os04g0644675 protein A0A0P0WFI4 A0A0P0WFI4_ORYSJ Os04g0644675 OSNPB_040644675 ENOG411EKXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor S-II (TFIIS) central domain Os02g0208600 protein (Fragment),Os06g0595900 protein Q0E2W4,A0A0P0WYM3 Q0E2W4_ORYSJ,A0A0P0WYM3_ORYSJ Os02g0208600 Os02g0208600 OSNPB_020208600,Os06g0595900 OSNPB_060595900 ENOG411EKXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EKXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C NA NA NA NA NA NA NA ENOG411EKXP CPFTSY O80842 CFTSY_ARATH Cell division protein FtsY homolog, chloroplastic (Chloroplast SRP receptor homolog, alpha subunit CpFtsY) (Fused signal recognition particle receptor) DISRUPTION PHENOTYPE: Seedling lethal. {ECO:0000269|PubMed:18764927}. Strong chlorosis due to the loss of 80% of the photosynthetic pigments. Alterations in the ultrastructure of chloroplasts with a drastic reduction in the amount of both appressed and unappressed thylakoid membranes. Reduced accumulation of various LHCPs.,Chlorophyll levels in the mutant are dramatically reduced to ~20% of those of wild type.,In contrast to chloroplasts in the leaves wild-type and mutant root plastids do not differ significantly in appearance. The root plastids appear to be some type of immature plastid or proplastid as they contain a rudimentary internal membrane structure.,Leaf cells from mutant plants were slightly smaller than wild-type leaf cells and contained fewer chloroplasts per cell. Chloroplasts in mutant plants were smaller and distended in shape with a large reduction in thylakoid membrane content and little evidence of grana stacking.,Mutant is extremely chlorotic and grows considerably more slowly than wild type (particularly on soil).,Reduction in Fe(III) chelate reductase activity under ion-deficiency conditions. By contrast under ion-sufficient conditions this activity for the mutant was reproducibly higher than that of wild type seedlings.,The average shoot weight of a 14-day-old mutant seedling is approximately half that of a 14-day-old wild-type seedling. Severe chlorosis-L. Nussaume-2007 FUNCTION: Signal recognition particle receptor protein. Binds GTP specifically. The GTPase activity is inhibited by the N-terminus of the protein until binding to the thylakoid membrane. Activates the GTPase activity of FFC/cpSRP54 when bound to the cpSRP complex. Required for light-harvesting chlorophyll a/b-binding protein (LHCP) integration into thylakoids. Might be also functionally linked to the Sec translocation machinery. {ECO:0000269|PubMed:10214972, ECO:0000269|PubMed:10480939, ECO:0000269|PubMed:12105232, ECO:0000269|PubMed:17475780, ECO:0000269|PubMed:18764927, ECO:0000269|PubMed:19293157}. MISCELLANEOUS: Unlike eukaryotic or prokaryotic signal recognition particle (SRP), the chloroplast SRP from higher plants lacks an SRP-RNA component. It targets both chloroplast-encoded and nucleus-encoded substrates to the thylakoid membrane, post-translationally for the nucleus-encoded proteins and co-translationally for the chloroplast-encoded proteins. 39679 Cell division protein FtsY homolog, chloroplastic (Chloroplast SRP receptor homolog, alpha subunit CpFtsY) (Fused signal recognition particle receptor) chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614] DEVELOPMENTAL STAGE: Peak of expression 20 days after germination. {ECO:0000269|PubMed:18764927}. TISSUE SPECIFICITY: Expressed in green tissues. Low levels in roots and seeds. {ECO:0000269|PubMed:16813577, ECO:0000269|PubMed:18764927}. AT2G45770 cell division protein FtsY Os01g0958100 protein (Putative chloroplast SRP receptor cpFtsY) (cDNA clone:001-017-E11, full insert sequence) Q5JK67 Q5JK67_ORYSJ OJ1294_F06.26-1 Os01g0958100 OsJ_04826 OSNPB_010958100 ENOG411EKXQ MTG13.10 Q9FMD2,A0A1P8BDW0 Q9FMD2_ARATH,A0A1P8BDW0_ARATH AT5g16650/MTG13_10 (Chaperone DnaJ-domain superfamily protein),Chaperone DnaJ-domain superfamily protein 15017,19489 AT5g16650/MTG13_10 (Chaperone DnaJ-domain superfamily protein),Chaperone DnaJ-domain superfamily protein integral component of membrane [GO:0016021] locus:2174170; AT5G16650 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411EKXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os02g0760000 protein A0A0P0VPW3 A0A0P0VPW3_ORYSJ Os02g0760000 OSNPB_020760000 ENOG411EKXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os02g0782300 protein (cDNA clone:J013092E02, full insert sequence) Q6K7F0 Q6K7F0_ORYSJ Os02g0782300 OJ1311_D08.2 OSNPB_020782300 ENOG411EKX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3441) Os12g0564600 protein (Fragment) A0A0P0YBF4 A0A0P0YBF4_ORYSJ Os12g0564600 OSNPB_120564600 ENOG411EKX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vps5 C terminal like NA NA NA NA NA NA NA ENOG411EKX0 SNRNP65,U11 Q8RWV8,A0A1P8AMG9,A0A1P8AMD5 U1165_ARATH,A0A1P8AMG9_ARATH,A0A1P8AMD5_ARATH U11/U12 small nuclear ribonucleoprotein 65 kDa protein (U11/U12 snRNP 65 kDa protein) (U11/U12-65K),RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:24606192}. FUNCTION: Component of minor spliceosome required for U12-type intron splicing and alternative splicing of many introns. Binds specifically to U12 snRNA, which is necessary for branch-point site recognition. Required for normal plant development. {ECO:0000269|PubMed:24606192}. R-ATH-72165; 48712,43892,46111 U11/U12 small nuclear ribonucleoprotein 65 kDa protein (U11/U12 snRNP 65 kDa protein) (U11/U12-65K),RNA-binding (RRM/RBD/RNP motifs) family protein nucleus [GO:0005634]; U12-type spliceosomal complex [GO:0005689]; pre-mRNA intronic binding [GO:0097157]; U12 snRNA binding [GO:0030626]; inflorescence development [GO:0010229]; mRNA splicing, via spliceosome [GO:0000398],RNA binding [GO:0003723] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:24606192}. locus:2195311; AT1G09230 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os03g0326600 protein (RNA recognition motif family protein, expressed) Q10M15 Q10M15_ORYSJ LOC_Os03g21020 Os03g0326600 OSNPB_030326600 ENOG411EKX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor NA NA NA NA NA NA NA ENOG411EKX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRIGHT DNA-binding protein-like (Os06g0622300 protein) (cDNA clone:J013170P10, full insert sequence) (cDNA clone:J033020C22, full insert sequence),Os06g0622300 protein (Fragment),Os06g0622300 protein Q69XV5,A0A0P0WZ85,A0A0P0WZ02 Q69XV5_ORYSJ,A0A0P0WZ85_ORYSJ,A0A0P0WZ02_ORYSJ P0040H10.36-1 Os06g0622300 OsJ_22009 OSNPB_060622300,Os06g0622300 OSNPB_060622300 ENOG411EKX3 AO Q94AY1 NADB_ARATH L-aspartate oxidase, chloroplastic (EC 1.4.3.16) (Protein FLAGELLIN-INSENSITIVE 4) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:16698895}. Embryo defective; Preglobular / Globular-T. Hashimoto-2007 FUNCTION: Catalyzes the oxidation of L-aspartate to iminoaspartate. Can complement nadB-deficient E.coli mutant. Plays a role in stomatal immunity. {ECO:0000269|PubMed:16698895, ECO:0000269|PubMed:22730426}. MISCELLANEOUS: The viable mutant fin4 (T-DNA insertion in the promoter) is impaired in the RBOHD-dependent pathogen-associated molecular pattern (PAMP)-induced reactive oxygen species (ROS) burst and stomatal closure. {ECO:0000305|PubMed:22730426}. PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; iminoaspartate from L-aspartate (oxidase route): step 1/1. ARA:AT5G14760-MONOMER; 1.4.3.16 71412 L-aspartate oxidase, chloroplastic (EC 1.4.3.16) (Protein FLAGELLIN-INSENSITIVE 4) chloroplast [GO:0009507]; L-aspartate oxidase activity [GO:0008734]; L-aspartate:fumarate oxidoreductase activity [GO:0044318]; NAD biosynthetic process [GO:0009435] locus:2185480; AT5G14760 L-aspartate oxidase L-aspartate oxidase, chloroplastic (EC 1.4.3.16) (Protein FLAGELLIN-INSENSITIVE 4) Q6Z836 NADB_ORYSJ Os02g0134400 LOC_Os02g04170 P0585B01.16 FUNCTION: Catalyzes the oxidation of L-aspartate to iminoaspartate. {ECO:0000250}. ENOG411DV4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF604 Fringe protein, putative, expressed (Os03g0124100 protein) (cDNA clone:002-120-E03, full insert sequence),Os06g0302100 protein,Os11g0119025 protein,Os08g0165501 protein Q10SF6,A0A0P0WW26,A0A0P0XYB5,A0A0P0XC58 Q10SF6_ORYSJ,A0A0P0WW26_ORYSJ,A0A0P0XYB5_ORYSJ,A0A0P0XC58_ORYSJ LOC_Os03g03270 Os03g0124100 OSNPB_030124100,Os06g0302100 OSNPB_060302100,Os11g0119025 OSNPB_110119025,Os08g0165501 OSNPB_080165501 ENOG411DV4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heterogeneous nuclear ribonucleoprotein U-like protein Os04g0636000 protein B9FCR0 B9FCR0_ORYSJ Os04g0636000 OsJ_16318 OSNPB_040636000 ENOG411DV4A SCPL42,SCPL41,SCPL44,SCPL43 Q9FH05,Q9FH06,Q9MAR8,Q84W27,A0A1P8AXY2,A0A1P8AY06,F4ITD3 SCP42_ARATH,SCP41_ARATH,SCP44_ARATH,SCP43_ARATH,A0A1P8AXY2_ARATH,A0A1P8AY06_ARATH,F4ITD3_ARATH Serine carboxypeptidase-like 42 (EC 3.4.16.-),Serine carboxypeptidase-like 41 (EC 3.4.16.-),Serine carboxypeptidase-like 44 (EC 3.4.16.-),Serine carboxypeptidase-like 43 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 52874,52541,53923,49774,50001,52836,49873 Serine carboxypeptidase-like 42 (EC 3.4.16.-),Serine carboxypeptidase-like 41 (EC 3.4.16.-),Serine carboxypeptidase-like 44 (EC 3.4.16.-),Serine carboxypeptidase-like 43 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603],extracellular region [GO:0005576]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Expression not detected. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:15908604}.,TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:15908604}. locus:2157622;,locus:2157612;,locus:2029127;,locus:2060774; AT5G42240,AT5G42230,AT1G43780,AT2G12480 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-) Q2R8W8 Q2R8W8_ORYSJ LOC_Os11g10750 Os11g0213600 OSNPB_110213600 ENOG411DV4F MMB12.5 A0A1I9LMU8,A0A1I9LMU9,F4JCD4,F4JCD3 A0A1I9LMU8_ARATH,A0A1I9LMU9_ARATH,F4JCD4_ARATH,F4JCD3_ARATH Uncharacterized protein 96984,95113,118966,119037 Uncharacterized protein endoplasmic reticulum [GO:0005783]; protein disulfide isomerase activity [GO:0003756]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976] locus:2092241; AT3G19780 NA Os10g0485100 protein (Fragment) Q0IWV7,A0A0P0XVG9 Q0IWV7_ORYSJ,A0A0P0XVG9_ORYSJ Os10g0485100 OSNPB_100485100 ENOG411DV4G MURE F4I3P9 F4I3P9_ARATH ALBINO OR PALE-GREEN 13 Seedling lethal (inferred from pigment defect)-D. Meinke-2003 FUNCTION: Involved in chloroplast biogenesis. Required for thylakoid membrane development. Seems to be required for plastid-encoded plastid RNA polymerase (PEP)-dependent gene expression. {ECO:0000269|PubMed:18036201}. 85587 ALBINO OR PALE-GREEN 13 chloroplast [GO:0009507]; nucleoid [GO:0009295]; acid-amino acid ligase activity [GO:0016881]; ATP binding [GO:0005524]; biosynthetic process [GO:0009058]; cell division [GO:0051301]; chloroplast fission [GO:0010020]; chloroplast organization [GO:0009658]; regulation of cell shape [GO:0008360] locus:2026699; AT1G63680 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan (By similarity) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic,Os10g0548900 protein Q94LU9,A0A0P0XX82 MURE_ORYSJ,A0A0P0XX82_ORYSJ MURE Os10g0548900 LOC_Os10g40130 OSJNBa0082M15.18,Os10g0548900 OSNPB_100548900 FUNCTION: Required for the activity of the plastid-encoded RNA polymerase (PEP) and full expression of genes transcribed by PEP. {ECO:0000250|UniProtKB:K7WCC7}. ENOG411DV4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 7 (FDRMADS1) (MADS-box protein 45) (OsMADS45) (OsMADS7) (Protein AGAMOUS-like 6) (RMADS216) Q0J466 MADS7_ORYSJ MADS7 AGL6 M79 MADS45 Os08g0531700 LOC_Os08g41950 P0702E04.10 FUNCTION: Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.10}. ENOG411DV4E T16K5.180 Q9M2X5,Q9FJW0 Q9M2X5_ARATH,Q9FJW0_ARATH RuvB-like helicase (EC 3.6.4.12) 3.6.4.12 52701,52114 RuvB-like helicase (EC 3.6.4.12) chloroplast [GO:0009507]; Ino80 complex [GO:0031011]; NuA4 histone acetyltransferase complex [GO:0035267]; R2TP complex [GO:0097255]; Swr1 complex [GO:0000812]; ATP binding [GO:0005524]; ATP-dependent 5'-3' DNA helicase activity [GO:0043141]; ATP-dependent DNA helicase activity [GO:0004003]; box C/D snoRNP assembly [GO:0000492]; chromatin remodeling [GO:0006338]; histone acetylation [GO:0016573]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; Ino80 complex [GO:0031011]; NuA4 histone acetyltransferase complex [GO:0035267]; nucleolus [GO:0005730]; R2TP complex [GO:0097255]; Swr1 complex [GO:0000812]; ATP binding [GO:0005524]; ATP-dependent 5'-3' DNA helicase activity [GO:0043141]; ATP-dependent DNA helicase activity [GO:0004003]; box C/D snoRNP assembly [GO:0000492]; chromatin remodeling [GO:0006338]; histone acetylation [GO:0016573]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] locus:2097420;,locus:2158656; AT3G49830,AT5G67630 ruvB-like RuvB-like helicase (EC 3.6.4.12) Q5SMU8,A0A0P0X861 Q5SMU8_ORYSJ,A0A0P0X861_ORYSJ Os06g0186900 Os06g0186900 OsJ_20388 OSNPB_060186900 P0470C02.10,Os07g0581100 OSNPB_070581100 ENOG411DV4J IRX9 Q9ZQC6 IRX9_ARATH Probable beta-1,4-xylosyltransferase IRX9 (EC 2.4.2.-) (Protein IRREGULAR XYLEM 9) (Xylan xylosyltransferase IRX9) DISRUPTION PHENOTYPE: Dwarf phenotype. Collapsed xylem vessels and reduced xylan content in cell wall. {ECO:0000269|PubMed:15980264, ECO:0000269|PubMed:16844780, ECO:0000269|PubMed:17322407, ECO:0000269|PubMed:17944810}. The double mutants had significantly less xylose compared with the irx8 and irx9 single mutant plants. Whereas irx8 and irx9 contain ~40 to 50% xylose compared with the wild type the double mutant contained only ~20% xylose compared with wild-type plants.,Although irx9 mutants have a reduction in xylose levels they retain the ability to form the oligosaccharide leader present at the reducing end of xylan chains. However they appear to be defective in xylan chain elongation. Their xylan chains seem to show the normal branching pattern found in wild type xylan chains but glucuronic acid (GlcUA) is largely replaced by methylglucuronic acid (MeGlcUA). They are capable of accumulating cellulose throughout development but they have lower total cellulose levels than WT plants at middle and late developmental stages.,The wall thickness of interfascicular fibers and vessels in the stems of the mutants was decreased by ~60% compared with the wild type which is most likely the cause of their reduced stem strength.,irx9 mutants of Arabidopsis showed a decrease in the abundance of xylan as revealed by cell wall analysis.,Similar phenotype to that of the irx8-2 irx1-1 double mutant. Dwarf; Collapsed xylem; Low cellulose levels-S. Turner-2005 FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone. {ECO:0000269|PubMed:15980264, ECO:0000269|PubMed:16844780, ECO:0000269|PubMed:17322407, ECO:0000269|PubMed:17938130, ECO:0000269|PubMed:17944810, ECO:0000269|PubMed:20335400, ECO:0000269|PubMed:20424005}. ARA:AT2G37090-MONOMER; 2.4.2.24; 2.4.2.- 40059 Probable beta-1,4-xylosyltransferase IRX9 (EC 2.4.2.-) (Protein IRREGULAR XYLEM 9) (Xylan xylosyltransferase IRX9) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity [GO:0015018]; xylosyltransferase activity [GO:0042285]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; glucuronoxylan metabolic process [GO:0010413]; plant-type secondary cell wall biogenesis [GO:0009834] TISSUE SPECIFICITY: Expressed in developing interfascicular fibers, primary and secondary xylem in stems and developing secondary xylem in roots. {ECO:0000269|PubMed:17322407}. locus:2061748; AT2G37090 glycosyltransferase family 43 protein Probable glucuronosyltransferase Os05g0123100 (EC 2.4.-.-) (OsGT43A),Probable glucuronosyltransferase Os03g0287800 (EC 2.4.-.-),Glycosyltransferases (EC 2.4.-.-) Q75L84,Q10N05,Q852K7,Q84Z12,A0A0P0VW95 GT51_ORYSJ,GT32_ORYSJ,Q852K7_ORYSJ,Q84Z12_ORYSJ,A0A0P0VW95_ORYSJ Os05g0123100 LOC_Os05g03174 OJ1729_E02.10 P0008A07.2,Os03g0287800 LOC_Os03g17850,OSJNBb0060J21.15 LOC_Os03g57910 Os03g0793100 OsJ_12915 OSNPB_030793100,Os07g0588900 OSJNBb0005G07.122 OSNPB_070588900,Os03g0287800 OSNPB_030287800 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}.,FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000256|RuleBase:RU363127}. ENOG411DV4K APC5 Q8H1U4 APC5_ARATH Anaphase-promoting complex subunit 5 (Cyclosome subunit 5) FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 101040 Anaphase-promoting complex subunit 5 (Cyclosome subunit 5) nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein ubiquitination [GO:0016567] locus:2009150; AT1G06590 anaphase-promoting complex subunit Os12g0626300 protein B9GEE1 B9GEE1_ORYSJ Os12g0626300 OsJ_36942 OSNPB_120626300 ENOG411DV4H PER10 Q9FX85 PER10_ARATH Peroxidase 10 (Atperox P10) (EC 1.11.1.7) (ATP5a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT1G49570-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 38030 Peroxidase 10 (Atperox P10) (EC 1.11.1.7) (ATP5a) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in the whole plant, with the highest expression in roots. locus:2012156; AT1G49570 peroxidase NA NA NA NA NA NA NA ENOG411DV4N XBAT33,XBAT32 Q4FE45,Q6NLQ8 XB33_ARATH,XB32_ARATH E3 ubiquitin-protein ligase XBAT33 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT33) (Protein XB3 homolog 3) (RING-type E3 ubiquitin transferase XBAT33),E3 ubiquitin-protein ligase XBAT32 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT32) (Protein XB3 homolog 2) (RING-type E3 ubiquitin transferase XBAT32) DISRUPTION PHENOTYPE: Delay in development and flowering. Deficiency in lateral root formation. {ECO:0000269|PubMed:15584963}. Few lateral roots; Slow growth-W. Song-2004 FUNCTION: Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro. {ECO:0000269|PubMed:15644464}.,FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS). Negatively regulates ethylene biosynthesis probably via ubiquitin-dependent degradation of ACS4 and ACS7 enzymes. Regulates lateral root formation and development by controlling ethylene production which inhibits lateral root formation at high concentration. {ECO:0000269|PubMed:15584963, ECO:0000269|PubMed:20511490}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 55347,54586 E3 ubiquitin-protein ligase XBAT33 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT33) (Protein XB3 homolog 3) (RING-type E3 ubiquitin transferase XBAT33),E3 ubiquitin-protein ligase XBAT32 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT32) (Protein XB3 homolog 2) (RING-type E3 ubiquitin transferase XBAT32) metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; protein ubiquitination [GO:0016567],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; lateral root formation [GO:0010311]; negative regulation of ethylene biosynthetic process [GO:0010366]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567]; response to auxin [GO:0009733]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in the vascular system of primary root, vascular tissue of leaves, stems and anthers. {ECO:0000269|PubMed:15584963}. locus:2182860;,locus:2172600; AT5G07270,AT5G57740 E3 ubiquitin-protein ligase Probable E3 ubiquitin-protein ligase XBOS33 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS33) (RING-type E3 ubiquitin transferase XBOS33) (XB3 protein homolog 3),Probable E3 ubiquitin-protein ligase XBOS32 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS32) (RING-type E3 ubiquitin transferase XBOS32) (XB3 protein homolog 2),Os10g0521600 protein,Os03g0330800 protein,Os02g0791200 protein,Os04g0351300 protein Q337A0,Q6KAE5,A0A0P0XX10,A0A0P0VWZ7,A0A0P0VQH9,A0A0P0W8Z7 XB33_ORYSJ,XB32_ORYSJ,A0A0P0XX10_ORYSJ,A0A0P0VWZ7_ORYSJ,A0A0P0VQH9_ORYSJ,A0A0P0W8Z7_ORYSJ XBOS33 Os10g0521600 LOC_Os10g37730 OSJNBb0018B10.26 OSJNBb0028C01.29,XBOS32 Os02g0791200 LOC_Os02g54860 OJ1046_F07.26 OsJ_08676,Os10g0521600 OSNPB_100521600,Os03g0330800 OSNPB_030330800,Os02g0791200 OSNPB_020791200,Os04g0351300 OSNPB_040351300 ENOG411DV4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 Os06g0356800 protein (cDNA, clone: J075005N23, full insert sequence) B7F946 B7F946_ORYSJ Os06g0356800 OsJ_21297 OSNPB_060356800 ENOG411DV4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like Expressed protein (Os12g0512000 protein) Q2QPZ6 Q2QPZ6_ORYSJ LOC_Os12g32750 Os12g0512000 OSNPB_120512000 ENOG411DV4S TGA2,TGA6 P43273,Q39140,F4J8P7,A8MR70 TGA2_ARATH,TGA6_ARATH,F4J8P7_ARATH,A8MR70_ARATH Transcription factor TGA2 (HBP-1b homolog) (AHBP-1b) (bZIP transcription factor 20) (AtbZIP20),Transcription factor TGA6 (bZIP transcription factor 45) (AtbZIP45),TGACG motif-binding factor 6 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity. {ECO:0000269|PubMed:12897257}.,FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}. 36684,36850,39717,33963 Transcription factor TGA2 (HBP-1b homolog) (AHBP-1b) (bZIP transcription factor 20) (AtbZIP20),Transcription factor TGA6 (bZIP transcription factor 45) (AtbZIP45),TGACG motif-binding factor 6 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of transcription, DNA-templated [GO:0045892]; plant-type hypersensitive response [GO:0009626]; positive regulation of transcription, DNA-templated [GO:0045893]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains. TISSUE SPECIFICITY: Expressed in the whole plant.,TISSUE SPECIFICITY: Expressed predominantly in roots and flowers. locus:2169394;,locus:2082234; AT5G06950,AT3G12250 Transcription factor Transcription factor TGA2.2 (OsNIF1) (OsbZIP1) (bZIP transcription factor 28) (OsbZIP28),Transcription factor TGA2.1 (OsNIF2) (bZIP transcription factor 63) (OsbZIP63),Transcription factor TGAL1 (OsNIF4) (bZIP transcription factor 8) (OsbZIP08),Os05g0492000 protein Q6IVC3,Q7X993,Q6IVC2,A0A0P0WNV7 TGA22_ORYSJ,TGA21_ORYSJ,TGAL1_ORYSJ,A0A0P0WNV7_ORYSJ TGA2.2 Os03g0318600 LOC_Os03g20310 OsJ_10635,TGA2.1 Os07g0687700 LOC_Os07g48820 OJ1150_E04.124 OJ1165_F02.101 OsJ_25648,TGAL1 TGAL2 Os01g0808100 LOC_Os01g59350,Os05g0492000 OSNPB_050492000 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.,FUNCTION: Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}. MISCELLANEOUS: Plants silencing TGA2.1 display increased tolerance to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae, are dwarf, and present altered expression of pathogenesis-related (PR) genes. {ECO:0000269|PubMed:16045470}. ENOG411DV4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mur ligase middle domain NA NA NA NA NA NA NA ENOG411DV4Q STL1,STL2 O22943,Q9SCN0 STL1_ARATH,STL2_ARATH Probable glycosyltransferase STELLO1 (EC 2.4.-.-),Probable glycosyltransferase STELLO2 (EC 2.4.-.-) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with STL2. Stl1 and stl2 double mutants are impaired in cellulose production and exhibit a stunted growth. {ECO:0000269|PubMed:27277162}.,DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with STL1. Stl1 and stl2 double mutants are impaired in cellulose production and exhibit a stunted growth. {ECO:0000269|PubMed:27277162}. FUNCTION: Probable glycosyltransferase regulating the assembly and trafficking of cellulose synthase complexes. {ECO:0000269|PubMed:27277162}. MISCELLANEOUS: In classical Greek, STELLO mean 'to set in order, arrange, send'. {ECO:0000305|PubMed:27277162}. 2.4.-.- 88063,87660 Probable glycosyltransferase STELLO1 (EC 2.4.-.-),Probable glycosyltransferase STELLO2 (EC 2.4.-.-) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; identical protein binding [GO:0042802]; transferase activity, transferring glycosyl groups [GO:0016757]; plant-type cell wall cellulose biosynthetic process [GO:0052324]; regulation of plant-type cell wall cellulose biosynthetic process [GO:2001009],cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; identical protein binding [GO:0042802]; transferase activity, transferring glycosyl groups [GO:0016757]; plant-type cell wall cellulose biosynthetic process [GO:0052324]; regulation of plant-type cell wall cellulose biosynthetic process [GO:2001009] TISSUE SPECIFICITY: Expressed in cells that are expanding or producing secondary cell walls. {ECO:0000269|PubMed:27277162}.,TISSUE SPECIFICITY: Expressed in cells that are expanding or producing secondary cell walls. {ECO:0000305|PubMed:27277162}. locus:2054371;,locus:2103473; AT2G41770,AT3G57420 Protein of unknown function DUF288 Os07g0656400 protein,Os05g0391200 protein (Fragment),Os05g0204750 protein A0A0P0XA85,A0A0P0WLY8,A0A0P0WJ58 A0A0P0XA85_ORYSJ,A0A0P0WLY8_ORYSJ,A0A0P0WJ58_ORYSJ Os07g0656400 OSNPB_070656400,Os05g0391200 OSNPB_050391200,Os05g0204750 OSNPB_050204750 ENOG411DV4V MCM7 P43299 MCM7_ARATH DNA replication licensing factor MCM7 (EC 3.6.4.12) (Minichromosome maintenance protein 7) (AtMCM7) (Protein PROLIFERA) Embryo defective; Female gametophyte defective-P. Springer-1995 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells (By similarity). Required for megagametophyte and embryo development. {ECO:0000250}. R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69052;R-ATH-69300; Meiosis - yeast (04113),DNA replication (03030),Cell cycle - yeast (04111),Cell cycle (04110) 3.6.4.12 80333 DNA replication licensing factor MCM7 (EC 3.6.4.12) (Minichromosome maintenance protein 7) (AtMCM7) (Protein PROLIFERA) cytoplasm [GO:0005737]; MCM complex [GO:0042555]; nucleus [GO:0005634]; THO complex [GO:0000347]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; metal ion binding [GO:0046872]; cell cycle [GO:0007049]; DNA replication initiation [GO:0006270]; DNA unwinding involved in DNA replication [GO:0006268]; regulation of transcription, DNA-templated [GO:0006355]; sugar mediated signaling pathway [GO:0010182]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates in nucleus during the G1 phase of the cell cycle. During mitosis, the protein rapidly disappears, returning to daughter nuclei during G1. TISSUE SPECIFICITY: Expressed in shoot apex and flower buds. {ECO:0000269|PubMed:19357199}. locus:2132223; AT4G02060 MCM DNA replication licensing factor MCM7 (EC 3.6.4.12) (Minichromosome maintenance protein 7) (OsMCM7) Q2QNM1 MCM7_ORYSJ MCM7 Os12g0560700 LOC_Os12g37400 OsJ_36507 FUNCTION: Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. {ECO:0000250}. ENOG411DV4W MSN2.13 F4K243,F4HXG1 F4K243_ARATH,F4HXG1_ARATH Spindle assembly abnormal protein (DUF620),DUF620 family protein (DUF620) 41683,43598 Spindle assembly abnormal protein (DUF620),DUF620 family protein (DUF620) locus:2173634;,locus:2025207; AT5G66740,AT1G75160 Protein of unknown function (DUF620) NA NA NA NA NA NA NA ENOG411DV4T O65555,Q9ZUH1 Y4094_ARATH,Y2424_ARATH BTB/POZ domain-containing protein At4g30940,BTB/POZ domain-containing protein At2g24240 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 49052,49167 BTB/POZ domain-containing protein At4g30940,BTB/POZ domain-containing protein At2g24240 protein homooligomerization [GO:0051260]; protein ubiquitination [GO:0016567] locus:2126719;,locus:2047540; AT4G30940,AT2G24240 domain-containing protein OSJNBa0029H02.24 protein (Os04g0501500 protein) Q7XU86 Q7XU86_ORYSJ OSJNBa0029H02.24 Os04g0501500 OSNPB_040501500 ENOG411DV4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DV4Z CCMFN2,CCMFN1; Q33884,Q9T6H8,F4IL90 CCMF2_ARATH,CCMF1_ARATH,F4IL90_ARATH Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2 (Cytochrome c biogenesis orf203) (Fragment),Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1 (Cytochrome c biogenesis orf382),Cytochrome C assembly protein FUNCTION: Forms a complex with CCMFC, CCMFN1 and CCMH that performs the assembly of heme with c-type apocytochromes in mitochondria. {ECO:0000269|PubMed:18644794}.,FUNCTION: Forms a complex with CCMFC, CCMFN2 and CCMH that performs the assembly of heme with c-type apocytochromes in mitochondria. {ECO:0000269|PubMed:18644794}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07768) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited.,MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07783) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. 23629,43647,17774 Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2 (Cytochrome c biogenesis orf203) (Fragment),Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1 (Cytochrome c biogenesis orf382),Cytochrome C assembly protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; heme binding [GO:0020037]; heme transporter activity [GO:0015232]; cytochrome complex assembly [GO:0017004],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; heme transporter activity [GO:0015232]; cytochrome complex assembly [GO:0017004] locus:504955917; ATMG00960,AT2G07783ATMG00830;,AT2G07768 cytochrome c Cytochrome c biogenesis Fn Q8HCN0 Q8HCN0_ORYSJ ccmFn ENOG411DV4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Branched-chain-amino-acid aminotransferase-like protein 3 Os05g0244700 protein (cDNA clone:J033051I12, full insert sequence),Branched-chain amino acid aminotransferase-like (Os01g0238500 protein) Q0DJP6,Q5NAM3 Q0DJP6_ORYSJ,Q5NAM3_ORYSJ Os05g0244700 Os05g0244700 OSNPB_050244700,Os01g0238500 OSJNBa0086P08.22 OSNPB_010238500 ENOG411DV4Y KIN7M,KIN7D Q9SJU0,Q8W5R5 KN7M_ARATH,KN7D_ARATH Kinesin-like protein KIN-7M, chloroplastic,Kinesin-like protein KIN-7D, mitochondrial (Mitochondria-targeted kinesin-related protein 2) ARA:GQT-769-MONOMER; 117090,116464 Kinesin-like protein KIN-7M, chloroplastic,Kinesin-like protein KIN-7D, mitochondrial (Mitochondria-targeted kinesin-related protein 2) chloroplast [GO:0009507]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; metal ion binding [GO:0046872]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; metal ion binding [GO:0046872]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018]; regulation of defense response [GO:0031347] locus:2050044;,locus:2120187; AT2G21380,AT4G39050 KISc Kinesin-like protein KIN-7K, chloroplastic Q9FW70 KN7K_ORYSJ KIN7K Os10g0512800 LOC_Os10g36880 OsJ_32142 OSJNBa0026L12.18 ENOG411DV42 Q8VZD1,F4KB18 Q8VZD1_ARATH,F4KB18_ARATH At5g08400/F8L15_130 (Structural maintenance of chromosomes-like protein, putative (DUF3531)),Structural maintenance of chromosomes-like protein, putative (DUF3531) 37984,34073 At5g08400/F8L15_130 (Structural maintenance of chromosomes-like protein, putative (DUF3531)),Structural maintenance of chromosomes-like protein, putative (DUF3531) locus:2150798; AT5G08400 Protein of unknown function (DUF3531) Os02g0827600 protein (cDNA clone:J013152B13, full insert sequence) Q0DW79 Q0DW79_ORYSJ Os02g0827600 Os02g0827600 OsJ_08967 OSNPB_020827600 ENOG411DV43 F6H11.100 O49538 O49538_ARATH At5g65790 (MYB transcription factor) (Myb - related protein) (Myb domain protein 68) (Transcription factor-like protein) 41842 At5g65790 (MYB transcription factor) (Myb - related protein) (Myb domain protein 68) (Transcription factor-like protein) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to gibberellin [GO:0009739]; response to salicylic acid [GO:0009751] locus:2169970; AT5G65790 Transcription factor Myb-like DNA-binding domain containing protein, expressed (Os03g0771100 protein) (P-type R2R3 Myb proteind) (cDNA clone:006-308-C02, full insert sequence) Q6AU56 Q6AU56_ORYSJ Os03g0771100 LOC_Os03g56090 Os03g0771100 OsJ_12746 OSJNBa0072F13.5 OSNPB_030771100 ENOG411DV40 AP22.35 A8MS51,F4JR78,F4JR77,F4JR75 A8MS51_ARATH,F4JR78_ARATH,F4JR77_ARATH,F4JR75_ARATH CLK4-associating serine/arginine-rich protein 64458,58601,64571,64329 CLK4-associating serine/arginine-rich protein locus:2115100; AT4G36980 Splicing factor arginine serine-rich Expressed protein (Os03g0395900 protein) (cDNA clone:J033097M22, full insert sequence),Os03g0395900 protein Q10K55,A0A0P0VYE1 Q10K55_ORYSJ,A0A0P0VYE1_ORYSJ Os03g0395900 LOC_Os03g27840 OSNPB_030395900,Os03g0395900 OSNPB_030395900 ENOG411DV41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411DV46 FRL4B,FRL4A Q940H8,Q9LUV4 FRL4B_ARATH,FRL4A_ARATH FRIGIDA-like protein 4b,FRIGIDA-like protein 4a 59364,59229 FRIGIDA-like protein 4b,FRIGIDA-like protein 4a cell differentiation [GO:0030154]; flower development [GO:0009908] TISSUE SPECIFICITY: Expressed in leaves, shoot apex, flowers and during seed development. {ECO:0000269|PubMed:20405310}. locus:2130429;,locus:2087872; AT4G14900,AT3G22440 Frigida-like protein FRIGIDA-like protein,FRIGIDA-like protein (Fragment) Q6F379,Q6ZA60,Q0D8A6,A0A0P0W468,A0A0N7KI74 Q6F379_ORYSJ,Q6ZA60_ORYSJ,Q0D8A6_ORYSJ,A0A0P0W468_ORYSJ,A0A0N7KI74_ORYSJ OSJNBb0021G19.18 LOC_Os03g58070 Os03g0794900 OSNPB_030794900,P0496D04.37-1 Os07g0173200 OSNPB_070173200,Os07g0173200 Os07g0173200 OSNPB_070173200,Os03g0794900 OSNPB_030794900 ENOG411DV44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Expressed protein (Os03g0655500 protein) (Putative ankyrin) Q6AT64 Q6AT64_ORYSJ LOC_Os03g45290 Os03g0655500 OSJNBb0023J24.4 OSNPB_030655500 ENOG411DV45 TCP13 Q9S7W5 TCP13_ARATH Transcription factor TCP13 (Plastid transcription factor 1) (TFPD) Homozygotes have a WT phenotype Pale cotyledons and slow growth under short days-S. Yoshida-2001 FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. 39610 Transcription factor TCP13 (Plastid transcription factor 1) (TFPD) chloroplast [GO:0009507]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; positive regulation of development, heterochronic [GO:0045962]; regulation of defense response [GO:0031347]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931}. locus:2076492; AT3G02150 Transcription factor NA NA NA NA NA NA NA ENOG411DV48 APRF1 Q9LYK6 APRF1_ARATH Protein ANTHESIS POMOTING FACTOR 1 DISRUPTION PHENOTYPE: Altered shoot apical meristem (SAM) and increased growth rates, as well as prolonged vegetative phase and delayed bolting resulting in an impairment of flowering under long days (LD). Altered expression of FLC and SOC1. {ECO:0000269|PubMed:27968983}. FUNCTION: Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus (By similarity). Promotes flowering under long days (LD) via the regulation of bolting (PubMed:27968983). {ECO:0000250|UniProtKB:Q9VLN1, ECO:0000269|PubMed:27968983}. 36628 Protein ANTHESIS POMOTING FACTOR 1 Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; Set1C/COMPASS complex [GO:0048188]; chromatin binding [GO:0003682]; flower development [GO:0009908]; histone H3-K4 trimethylation [GO:0080182]; histone methylation [GO:0016571]; regulation of long-day photoperiodism, flowering [GO:0048586]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510] DEVELOPMENTAL STAGE: During seed development, accumulates in the endosperm and in the developing embryo. Strongly expressed following germination throughout seedling growth, especially in aerial part. Present in cotyledons, including the vascular system, hydathodes and trichomes, as well as in young leaves and leaves primordia. In roots, mostly expressed 7 days after sowing. Localized in the central cylinder of roots and the lower hypocotyl area. Observed in the shoot apical meristem (SAM) and in the vascular system, particularly in the xylem parenchyma and phloem. During reproductive development, observed in flowers of stages 13-15, predominantly in the male reproductive tissues, mostly in the developing pollen grains, the anther tissues and the filaments, and, to a lower extent, in the vascular system of sepals and the gynoecium, and in petals. After fertilization, confined to the placenta and the abscission zone of the siliques. {ECO:0000269|PubMed:27968983}. TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), embryos, seedlings, cotyledons, leaves primordia, young leaves and roots. {ECO:0000269|PubMed:27968983}. locus:2222612; AT5G14530 WD repeat-containing protein Os05g0543300 protein (cDNA clone:J033127E04, full insert sequence) Q65XN0 Q65XN0_ORYSJ Os05g0543300 OJ1288_A07.9 OSNPB_050543300 ENOG411DV49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2-oxoglutarate Fe(II)-dependent dioxygenase-like Os08g0480200 protein (Putative flavonol synthase) (cDNA clone:J013039B08, full insert sequence) Q6Z244 Q6Z244_ORYSJ Os08g0480200 OJ1113_A10.32 OSJNBb0092C08.2 OSNPB_080480200 ENOG411EDI8 ATL35,ATL36,ATL37 Q9M0R6,Q9M0R5,Q9M0R4 ATL35_ARATH,ATL36_ARATH,ATL37_ARATH Putative RING-H2 finger protein ATL35 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL35),Putative RING-H2 finger protein ATL36 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL36),Putative RING-H2 finger protein ATL37 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL37) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34317,38796,40001 Putative RING-H2 finger protein ATL35 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL35),Putative RING-H2 finger protein ATL36 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL36),Putative RING-H2 finger protein ATL37 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL37) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2122358;,locus:2122363;,locus:2122378; AT4G09110,AT4G09120,AT4G09130 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E51B Q8L8N3 Q8L8N3_ARATH At2g17350 (Beta-mannosyltransferase-like protein) (Uncharacterized protein At2g17350) 13808 At2g17350 (Beta-mannosyltransferase-like protein) (Uncharacterized protein At2g17350) transferase activity, transferring glycosyl groups [GO:0016757] locus:2827566; AT2G17350 NA Os08g0511800 protein (cDNA clone:001-113-A11, full insert sequence),Os09g0491692 protein (cDNA clone:002-185-A09, full insert sequence) Q6Z8P3,B7F3S5 Q6Z8P3_ORYSJ,B7F3S5_ORYSJ Os08g0511800 OsJ_27904 OSNPB_080511800 P0711H09.4,Os09g0491692 Os09g0491692 OsJ_29845 OSNPB_090491692 ENOG411DPT4 Q8VYP6 NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9 (EC 2.7.1.-) (Nucleolar protein 9 homolog) FUNCTION: Polynucleotide 5'-kinase involved in rRNA processing. {ECO:0000250}. R-ATH-6791226; 2.7.1.- 41481 Polynucleotide 5'-hydroxyl-kinase NOL9 (EC 2.7.1.-) (Nucleolar protein 9 homolog) nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; polynucleotide 5'-hydroxyl-kinase activity [GO:0051731]; cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000448]; rRNA processing [GO:0006364] locus:2183830; AT5G11010 polynucleotide 5'-hydroxyl-kinase NOL9-like Os01g0184000 protein (cDNA clone:J023078C01, full insert sequence) (cDNA clone:J023107F13, full insert sequence) Q5VRY2 Q5VRY2_ORYSJ Os01g0184000 Os01g0184000 OSNPB_010184000 P0489A01.21 ENOG411DPT5 WRKY2 Q9FG77 WRKY2_ARATH Probable WRKY transcription factor 2 (WRKY DNA-binding protein 2) DISRUPTION PHENOTYPE: Strong defects in embryo development. {ECO:0000269|PubMed:21316593}. Germination and seedling growth sensitive to ABA-D. Yu-2009 FUNCTION: Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. 74561 Probable WRKY transcription factor 2 (WRKY DNA-binding protein 2) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; establishment of cell polarity [GO:0030010]; longitudinal axis specification [GO:0009942]; pollen development [GO:0009555]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. locus:2177596; AT5G56270 WRKY transcription factor Os08g0499300 protein (Putative WRKY DNA-binding protein) (Transcription factor WRKY30) (WRKY transcription factor 30) (WRKY30) (cDNA clone:J013025I24, full insert sequence),Os04g0471700 protein (WRKY2),Os08g0499300 protein (Fragment) Q6ZKN0,Q7XAA9,A0A0P0XHA1 Q6ZKN0_ORYSJ,Q7XAA9_ORYSJ,A0A0P0XHA1_ORYSJ Os08g0499300 WRKY30 Os08g0499300 OJ1118_A06.2 OSNPB_080499300,Os04g0471700 Os04g0471700 OSNPB_040471700,Os08g0499300 OSNPB_080499300 ENOG411DPT6 Q0WVK0,Q9FJW2,A0A1I9LLM0,F4K567 Q0WVK0_ARATH,Q9FJW2_ARATH,A0A1I9LLM0_ARATH,F4K567_ARATH Transmembrane protein (DUF2215) (Uncharacterized protein At3g49840),Emb|CAB66922.1 (Transmembrane protein (DUF2215)) (Uncharacterized protein At5g67610) (Uncharacterized protein At5g67610/K9I9_18),Transmembrane protein (DUF2215) 50840,53637,50912,54971 Transmembrane protein (DUF2215) (Uncharacterized protein At3g49840),Emb|CAB66922.1 (Transmembrane protein (DUF2215)) (Uncharacterized protein At5g67610) (Uncharacterized protein At5g67610/K9I9_18),Transmembrane protein (DUF2215) integral component of membrane [GO:0016021] locus:2097430;,locus:2158641; AT3G49840,AT5G67610 Uncharacterized conserved protein (DUF2215) Os03g0430000 protein (Proline-rich family protein, putative, expressed) (cDNA clone:J023002L14, full insert sequence) Q6AUV3 Q6AUV3_ORYSJ OSJNBa0091B22.9 LOC_Os03g31570 Os03g0430000 OsJ_11361 OSNPB_030430000 ENOG411DPT7 F24G16.90,LETM2,LETM1 Q9M1Z2,F4IBH5,F4J9G6 Q9M1Z2_ARATH,F4IBH5_ARATH,F4J9G6_ARATH LETM1-like protein (Uncharacterized protein F24G16.90),LETM1-like protein 85735,83561,86384 LETM1-like protein (Uncharacterized protein F24G16.90),LETM1-like protein integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; calcium ion binding [GO:0005509]; ribosome binding [GO:0043022],integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; calcium ion binding [GO:0005509]; ribosome binding [GO:0043022]; cellular metal ion homeostasis [GO:0006875] locus:2034136;,locus:2080502; AT3G59820,AT1G65540 LETM1 and EF-hand domain-containing protein 1 mitochondrial-like Os02g0608400 protein (Putative leucine zipper-EF-hand containing transmembrane protein 1),Os02g0608400 protein (Fragment) Q6K1Y0,A0A0P0VLM9 Q6K1Y0_ORYSJ,A0A0P0VLM9_ORYSJ Os02g0608400 OSJNBa0030C08.32 OSNPB_020608400 P0496E03.5,Os02g0608400 OSNPB_020608400 ENOG411DPT0 PSAT1,PSAT2 Q96255,Q9SHP0 SERB1_ARATH,SERB2_ARATH Phosphoserine aminotransferase 1, chloroplastic (AtPSAT1) (EC 2.6.1.52) (Phosphohydroxythreonine aminotransferase),Phosphoserine aminotransferase 2, chloroplastic (AtPSAT2) (EC 2.6.1.52) FUNCTION: Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB). Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine. {ECO:0000269|PubMed:16289358, ECO:0000269|PubMed:9881164}.,FUNCTION: Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB). Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine. {ECO:0000269|PubMed:24368794}. PATHWAY: Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3.; PATHWAY: Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 3/5.,PATHWAY: Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3. ARA:AT4G35630-MONOMER;MetaCyc:AT4G35630-MONOMER;,ARA:AT2G17630-MONOMER; R-ATH-977347; 2.6.1.52; 2.6.1.52 47359,46634 Phosphoserine aminotransferase 1, chloroplastic (AtPSAT1) (EC 2.6.1.52) (Phosphohydroxythreonine aminotransferase),Phosphoserine aminotransferase 2, chloroplastic (AtPSAT2) (EC 2.6.1.52) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; O-phospho-L-serine:2-oxoglutarate aminotransferase activity [GO:0004648]; L-serine biosynthetic process [GO:0006564]; response to cytokinin [GO:0009735],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; O-phospho-L-serine:2-oxoglutarate aminotransferase activity [GO:0004648]; L-serine biosynthetic process [GO:0006564]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Ubiquitous, but expressed preferentially in light-grown roots and shoots. Detected in root meristems and in root tissues surrounding the vascular bundle. {ECO:0000269|PubMed:9881164}. locus:2127963;,locus:2057259; AT4G35630,AT2G17630 phosphoserine aminotransferase Phosphoserine aminotransferase (EC 2.6.1.52) Q8LMR0 Q8LMR0_ORYSJ Os03g0157900 OJ1134F05.4 LOC_Os03g06200 OsJ_09470 OSJNBa0011L14.1 OSNPB_030157900 ENOG411DPT1 AAE7 Q8VZF1 AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal (EC 6.2.1.1) (EC 6.2.1.2) (AMP-binding protein 7) (AtAMPBP7) (Acetyl-CoA synthetase) (Acyl-activating enzyme 7) (Butyryl-CoA synthetase) (Protein ACETATE NON-UTILIZING 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but seedlings have a strong decrease in glutamine and are resistant to the toxic acetate analog monofluoroacetic acid. {ECO:0000269|PubMed:14963767, ECO:0000269|PubMed:15533942}. Exhibited the highest level of resistance to fluoroacetate (FAc). Its germination and growth was unaffected by the toxin in the presence of exogenous sucrose. In the presence of FAc with no sucrose post-germinative growth may have been slightly affected. When germinated and grown on sodium acetate the mutant exhibited bleaching at concentrations which had little effect on the wild type.,Growth is more severely affected by 3.5 mM acetate than wt plants. Under these conditions mutant plant growth decreased 50-60% compared to no treatment while wt plant growth decreased 30-40%. Disrupted in thier ability to sense acetate.,Disrupted in the ability to sense acetate. Resistant to fluoroacetate (toxic acetate analogue)-M. Hooks-2005 FUNCTION: Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate. {ECO:0000269|PubMed:12805634, ECO:0000269|PubMed:15533942, ECO:0000269|PubMed:20863290, ECO:0000269|PubMed:21557725}. ARA:AT3G16910-MONOMER; 6.2.1.1; 6.2.1.2 62956 Acetate/butyrate--CoA ligase AAE7, peroxisomal (EC 6.2.1.1) (EC 6.2.1.2) (AMP-binding protein 7) (AtAMPBP7) (Acetyl-CoA synthetase) (Acyl-activating enzyme 7) (Butyryl-CoA synthetase) (Protein ACETATE NON-UTILIZING 1) peroxisome [GO:0005777]; acetate-CoA ligase activity [GO:0003987]; butyrate-CoA ligase activity [GO:0047760]; acetate metabolic process [GO:0006083]; butyrate metabolic process [GO:0019605]; glyoxylate cycle [GO:0006097] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and developing seeds. {ECO:0000269|PubMed:12805634, ECO:0000269|PubMed:15533942}. locus:2086122; AT3G16910 AMP-binding enzyme Os03g0305000 protein (cDNA, clone: J100034I22, full insert sequence) B7FA23 B7FA23_ORYSJ Os03g0305000 OsJ_10547 OSNPB_030305000 ENOG411DPT2 GRDP2,GRDP1 Q9SZJ2,Q9ZQ47,A0A1P8B2L8,B3H4A9 GRDP2_ARATH,GRDP1_ARATH,A0A1P8B2L8_ARATH,B3H4A9_ARATH Glycine-rich domain-containing protein 2 (AtGRDP2),Glycine-rich domain-containing protein 1 (AtGRDP1),DNA-binding protein, putative (Duplicated DUF1399),Uncharacterized protein DISRUPTION PHENOTYPE: Delayed growth and development. Late flowering and increased sensitivity to salt stress. {ECO:0000269|PubMed:25653657}.,DISRUPTION PHENOTYPE: Increased sensitivity to salt and osmotic stress in germination and cotyledon development. Abscisic acid hypersensitivity. {ECO:0000269|Ref.4}. FUNCTION: Involved in development and stress responses, probably through an auxin-dependent mechanism. {ECO:0000269|PubMed:25653657}.,FUNCTION: Plays a regulatory role in abscisic acid (ABA) signaling and tolerance to abiotic stress during germination. May be involved in the regulation of the ABI transcriptional factors. {ECO:0000269|Ref.4}. 86601,89487,80766,8577 Glycine-rich domain-containing protein 2 (AtGRDP2),Glycine-rich domain-containing protein 1 (AtGRDP1),DNA-binding protein, putative (Duplicated DUF1399),Uncharacterized protein auxin-activated signaling pathway [GO:0009734]; cellular response to osmotic stress [GO:0071470]; regulation of auxin mediated signaling pathway [GO:0010928]; regulation of photoperiodism, flowering [GO:2000028],plasma membrane [GO:0005886]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to osmotic stress [GO:0071470]; regulation of abscisic acid-activated signaling pathway [GO:0009787],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Develpomentally regulated, with the highest expression in flowers and immature siliques. {ECO:0000269|PubMed:25653657}. TISSUE SPECIFICITY: Expressed in leaves, inflorescences, buds, flowers and immature siliques. {ECO:0000269|PubMed:25653657}. locus:2121013;,locus:2065983;,locus:4515103503; AT4G37900,AT2G22660,AT4G37682 Protein of unknown function (DUF1399) Os11g0621300 protein (Pg1, putative, expressed) Q2R124 Q2R124_ORYSJ Os11g0621300 LOC_Os11g40590 OsJ_34675 OSNPB_110621300 ENOG411DPT3 PAB5,PAB8,PAB1,PAB3,PAB2 Q05196,Q9FXA2,F4HT49,O64380,P42731,Q9ZQG2 PABP5_ARATH,PABP8_ARATH,PABP1_ARATH,PABP3_ARATH,PABP2_ARATH,Q9ZQG2_ARATH Polyadenylate-binding protein 5 (PABP-5) (Poly(A)-binding protein 5),Polyadenylate-binding protein 8 (PABP-8) (Poly(A)-binding protein 8),Polyadenylate-binding protein 1 (PABP-1) (Poly(A)-binding protein 1),Polyadenylate-binding protein 3 (PABP-3) (Poly(A)-binding protein 3),Polyadenylate-binding protein 2 (PABP-2) (Poly(A)-binding protein 2),Putative poly(A) binding protein (RNA-binding protein) DISRUPTION PHENOTYPE: Pab2 and pab8 double mutants show significant growth and development defects and more resistance to Turnip mosaic virus (TuMV). {ECO:0000269|PubMed:18753244}.,DISRUPTION PHENOTYPE: Pab2 and pab4 double mutants, as well as pab2 and pab8 double mutants show significant growth and development defects and more resistance to Turnip mosaic virus (TuMV). {ECO:0000269|PubMed:18753244}. FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. {ECO:0000269|PubMed:8341686, ECO:0000269|PubMed:8776896}.,FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation (By similarity). During infection with potyvirus TuMV, acts as a potential integral component of the viral replicase complex that could play an important role in the regulation of potyviral RNA-dependent RNA polymerase (RdRp) (By similarity). {ECO:0000250}.,FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation (By similarity). {ECO:0000250}.,FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the cytoplasm, affects both translation and mRNA decay. Inhibits the polyadenylated RNA degradation by the Rrp41p 3'-->5' exonuclease in vitro. Binds with the 5'UTRs of PAB2, PAB3 and with a lower affinity with the 5'UTR of PAB5. {ECO:0000269|PubMed:10930416, ECO:0000269|PubMed:11516954, ECO:0000269|PubMed:12586718, ECO:0000269|PubMed:14624004}.,FUNCTION: Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the cytoplasm, affects both translation and mRNA decay. Stimulates translation by interaction with translation initiation factor eIF4G, a subunit of the cap-binding complex eIF4F, bringing the 5'- and 3'-ends of the mRNA in proximity. The formation of this circular mRNP structure appears to be critical for the synergistic effects of the cap and the poly(A) tail in facilitating translation initiation, recycling of ribosomes, and mRNA stability. During infection with potyvirus TuMV, acts as a potential integral component of the viral replicase complex that could play an important role in the regulation of potyviral RNA-dependent RNA polymerase (RdRp). {ECO:0000269|PubMed:10849337, ECO:0000269|PubMed:18222516, ECO:0000269|PubMed:18753244}. MISCELLANEOUS: A.thaliana contains 8 PABP genes. R-ATH-156827;R-ATH-975956;R-ATH-975957; 74423,72779,56214,72873,68672,14771 Polyadenylate-binding protein 5 (PABP-5) (Poly(A)-binding protein 5),Polyadenylate-binding protein 8 (PABP-8) (Poly(A)-binding protein 8),Polyadenylate-binding protein 1 (PABP-1) (Poly(A)-binding protein 1),Polyadenylate-binding protein 3 (PABP-3) (Poly(A)-binding protein 3),Polyadenylate-binding protein 2 (PABP-2) (Poly(A)-binding protein 2),Putative poly(A) binding protein (RNA-binding protein) cytosol [GO:0005829]; nucleus [GO:0005634]; poly(A) binding [GO:0008143]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; regulation of translation [GO:0006417]; translational initiation [GO:0006413],cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; regulation of translation [GO:0006417]; response to cadmium ion [GO:0046686]; viral process [GO:0016032],cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; regulation of translation [GO:0006417],cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; regulation of nuclear-transcribed mRNA poly(A) tail shortening [GO:0060211]; regulation of translation [GO:0006417],cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:1900151]; regulation of nuclear-transcribed mRNA poly(A) tail shortening [GO:0060211]; regulation of translational initiation [GO:0006446]; response to salt stress [GO:0009651]; translational initiation [GO:0006413]; viral process [GO:0016032] TISSUE SPECIFICITY: Expressed predominantly in immature flowers but also at lower levels in mature flowers and siliques. Detected in tapetum, pollen, ovules and developing seeds. Also detected in primary inflorescences and immature siliques. {ECO:0000269|PubMed:15650869, ECO:0000269|PubMed:8341686, ECO:0000269|PubMed:8776896}.,TISSUE SPECIFICITY: Expressed predominantly in immature flowers.,TISSUE SPECIFICITY: Expressed predominantly in roots but also at lower levels in immature flowers. {ECO:0000269|PubMed:8341686}.,TISSUE SPECIFICITY: Expressed predominantly in immature flowers. Detected in tapetum and pollen. Strongly expressed in immatures siliques. {ECO:0000269|PubMed:12586718, ECO:0000269|PubMed:15650869, ECO:0000269|PubMed:8341686}.,TISSUE SPECIFICITY: Expressed in all organs (at the protein level) but under distinct spatial and temporal regulation within each organ. {ECO:0000269|PubMed:10849338, ECO:0000269|PubMed:15650869, ECO:0000269|PubMed:8029336}. locus:2013011;,locus:2012161;,locus:2009036;,locus:2199700;,locus:2124261;,locus:2053679; AT1G71770,AT1G49760,AT1G34140,AT1G22760,AT4G34110,AT2G15500 Polyadenylate-binding protein Polyadenylate-binding protein (PABP),Os04g0504800 protein (Fragment),Os09g0115400 protein (Fragment),Os08g0314800 protein (Fragment) Q6YYV1,Q7F8Y1,Q6Z050,A0A0P0WCK4,A0A0P0WC10,A0A0P0XJQ2,A0A0N7KQC7,A0A0P0XF64,A0A0P0XEV9 Q6YYV1_ORYSJ,Q7F8Y1_ORYSJ,Q6Z050_ORYSJ,A0A0P0WCK4_ORYSJ,A0A0P0WC10_ORYSJ,A0A0P0XJQ2_ORYSJ,A0A0N7KQC7_ORYSJ,A0A0P0XF64_ORYSJ,A0A0P0XEV9_ORYSJ Os09g0115400 Os09g0115400 OJ1310_F05.15 OsJ_28392 OSNPB_090115400,Os04g0504800 Os04g0504800 OSJNBb0116K07.11 OSNPB_040504800,P0451H06.101 OJ1120_B07.121 Os08g0314800 OSNPB_080314800,Os04g0504800 OSNPB_040504800,Os09g0115400 OSNPB_090115400,Os08g0314800 OSNPB_080314800 FUNCTION: Binds the poly(A) tail of mRNA. {ECO:0000256|RuleBase:RU362004}. ENOG411DPT8 ASHH3 Q945S8 ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3 (EC 2.1.1.43) (ASH1 homolog 3) (Protein SET DOMAIN GROUP 7) FUNCTION: Histone methyltransferase. {ECO:0000250}. R-ATH-3214841;R-ATH-5693565; 2.1.1.43 41286 Histone-lysine N-methyltransferase ASHH3 (EC 2.1.1.43) (ASH1 homolog 3) (Protein SET DOMAIN GROUP 7) chromosome, centromeric region [GO:0000775]; endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; histone-lysine N-methyltransferase activity [GO:0018024]; protein-lysine N-methyltransferase activity [GO:0016279] locus:2051769; AT2G44150 Histone-lysine n-methyltransferase Os09g0307800 protein (Putative SET domain protein 110),Os09g0307800 protein (Fragment) Q69JB4,A0A0P0XLF3 Q69JB4_ORYSJ,A0A0P0XLF3_ORYSJ Os09g0307800 Os09g0307800 OSJNBa0017N10.23-1 OSJNBa0092O08.1-1 OSNPB_090307800,Os09g0307800 OSNPB_090307800 ENOG411DPT9 O22778,A0A1P8B1H3 O22778_ARATH,A0A1P8B1H3_ARATH Putative tyrosine-specific transport protein (Tryptophan/tyrosine permease) (Tryptophan/tyrosine permease family protein),Tryptophan/tyrosine permease 46408,58232 Putative tyrosine-specific transport protein (Tryptophan/tyrosine permease) (Tryptophan/tyrosine permease family protein),Tryptophan/tyrosine permease integral component of plasma membrane [GO:0005887]; aromatic amino acid transmembrane transporter activity [GO:0015173]; symporter activity [GO:0015293]; amino acid transmembrane transport [GO:0003333],integral component of plasma membrane [GO:0005887]; aromatic amino acid transmembrane transporter activity [GO:0015173] locus:2051134; AT2G33260 tyrosine-specific transport Os07g0225100 protein (Tyrosine-specific transport protein-like protein) Q7EZS7 Q7EZS7_ORYSJ P0668C05.123 Os07g0225100 OSJNBa0066H10.104 OSNPB_070225100 ENOG411DPTD Q8L604 Q8L604_ARATH Transmembrane protein, putative (DUF2358) (Uncharacterized protein At1g65230) 32736 Transmembrane protein, putative (DUF2358) (Uncharacterized protein At1g65230) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2200410; AT1G65230 Uncharacterized conserved protein (DUF2358) Os01g0912700 protein (cDNA clone:J013155P10, full insert sequence) Q5N7X2 Q5N7X2_ORYSJ Os01g0912700 Os01g0912700 OsJ_04510 OSNPB_010912700 P0470A12.30 ENOG411DPTE SBP2,SBP1 Q93WN0,O23264 SEBP2_ARATH,SEBP1_ARATH Selenium-binding protein 2 (Protein EMBRYO SAC DEVELOPMENT ARREST 38),Selenium-binding protein 1 DISRUPTION PHENOTYPE: Impaired fusion of polar nuclei. {ECO:0000269|PubMed:15634699}. FUNCTION: Required for the fusion of female gametophyte polar nuclei. {ECO:0000269|PubMed:15634699}.,FUNCTION: Binds cadmium and mediates lower sensitivity to stress requiring glutathione (GSH) for tolerance (e.g. cadmium, selenate, and hydrogen peroxide excess). Probably helps to detoxify cadmium potentially through direct binding. {ECO:0000269|PubMed:18354042, ECO:0000269|PubMed:19710230}. 53937,54057 Selenium-binding protein 2 (Protein EMBRYO SAC DEVELOPMENT ARREST 38),Selenium-binding protein 1 selenium binding [GO:0008430]; polar nucleus fusion [GO:0010197],cytosol [GO:0005829]; plasmodesma [GO:0009506]; selenium binding [GO:0008430]; cellular response to selenium ion [GO:0071291]; response to cadmium ion [GO:0046686]; response to hydrogen peroxide [GO:0042542]; sulfate assimilation [GO:0000103] TISSUE SPECIFICITY: Mostly expressed in seedlings, leaves and stems, and, to a lower extent, in flowers and roots. {ECO:0000269|PubMed:18354042}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems and flowers. {ECO:0000269|PubMed:18354042}. locus:2129356;,locus:2129351; AT4G14040,AT4G14030 selenium-binding protein Os01g0916400 protein (Putative selenium binding protein) Q8RZW7 Q8RZW7_ORYSJ SBP Os01g0916400 OsJ_04540 OSNPB_010916400 P0004D12.34 P0413C03.8 ENOG411DPTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os04g0495500 protein (Fragment) Q0JC29 Q0JC29_ORYSJ Os04g0495500 Os04g0495500 OSNPB_040495500 ENOG411DPTG CYP712A1 O48532 O48532_ARATH Cytochrome P450, family 712, subfamily A, polypeptide 1 (Putative cytochrome P450) ARA:AT2G42250-MONOMER; 58061 Cytochrome P450, family 712, subfamily A, polypeptide 1 (Putative cytochrome P450) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2060025; AT2G42250 cytochrome P450 NA NA NA NA NA NA NA ENOG411DPTA PEX2,PEX4,PEX3,PEX1 Q9XIB6,O81765,Q9XIL9,Q9LJ64,A0A1P8AMX0,A0A1I9LRU7 PLRX2_ARATH,PLRX4_ARATH,PLRX3_ARATH,PLRX1_ARATH,A0A1P8AMX0_ARATH,A0A1I9LRU7_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2 (AtPEX2) (Pollen-specific LRR/EXTENSIN2) (Cell wall hydroxyproline-rich glycoprotein),Pollen-specific leucine-rich repeat extensin-like protein 4 (AtPEX4) (Pollen-specific LRR/EXTENSIN4) (Cell wall hydroxyproline-rich glycoprotein),Pollen-specific leucine-rich repeat extensin-like protein 3 (AtPEX3) (Pollen-specific LRR/EXTENSIN3) (Cell wall hydroxyproline-rich glycoprotein),Pollen-specific leucine-rich repeat extensin-like protein 1 (AtPEX1) (Pollen-specific LRR/EXTENSIN1) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat (LRR) family protein FUNCTION: Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. {ECO:0000250}. 90990,75248,78370,102823,91591,100366 Pollen-specific leucine-rich repeat extensin-like protein 2 (AtPEX2) (Pollen-specific LRR/EXTENSIN2) (Cell wall hydroxyproline-rich glycoprotein),Pollen-specific leucine-rich repeat extensin-like protein 4 (AtPEX4) (Pollen-specific LRR/EXTENSIN4) (Cell wall hydroxyproline-rich glycoprotein),Pollen-specific leucine-rich repeat extensin-like protein 3 (AtPEX3) (Pollen-specific LRR/EXTENSIN3) (Cell wall hydroxyproline-rich glycoprotein),Pollen-specific leucine-rich repeat extensin-like protein 1 (AtPEX1) (Pollen-specific LRR/EXTENSIN1) (Cell wall hydroxyproline-rich glycoprotein),Leucine-rich repeat (LRR) family protein cell wall [GO:0005618]; extracellular region [GO:0005576]; structural constituent of cell wall [GO:0005199]; cell wall organization [GO:0071555] TISSUE SPECIFICITY: Expressed in flowers, stamen, pollen, and pollinated carpels (at protein level). {ECO:0000269|PubMed:12644681, ECO:0000269|PubMed:16242667}.,TISSUE SPECIFICITY: Expressed in flowers, stamen, pollen, and pollinated carpels. {ECO:0000269|PubMed:12644681}. locus:2010247;,locus:2118949;,locus:2044576;,locus:2085889; AT1G49490,AT4G33970,AT2G15880,AT3G19020 Pollen-specific leucine-rich repeat extensin-like protein Os12g0542200 protein (Fragment),Os11g0657400 protein A0A0P0YB11,A0A0P0Y5A4 A0A0P0YB11_ORYSJ,A0A0P0Y5A4_ORYSJ Os12g0542200 OSNPB_120542200,Os11g0657400 OSNPB_110657400 ENOG411DPTB F1I16_50,F5K20.24 Q9M058,A0A1I9LSL0,Q8W4M2,Q8L7R0,A0A1I9LM96 Q9M058_ARATH,A0A1I9LSL0_ARATH,Q8W4M2_ARATH,Q8L7R0_ARATH,A0A1I9LM96_ARATH Ca-dependent solute carrier-like protein (Mitochondrial substrate carrier family protein) (Putative Ca-dependent solute carrier protein),Mitochondrial substrate carrier family protein,Mitochondrial substrate carrier family protein (Uncharacterized protein F5K20.24),Mitochondrial carrier like protein (Mitochondrial substrate carrier family protein) (Putative mitochondrial carrier protein) 36238,27629,39761,36593,31171 Ca-dependent solute carrier-like protein (Mitochondrial substrate carrier family protein) (Putative Ca-dependent solute carrier protein),Mitochondrial substrate carrier family protein,Mitochondrial substrate carrier family protein (Uncharacterized protein F5K20.24),Mitochondrial carrier like protein (Mitochondrial substrate carrier family protein) (Putative mitochondrial carrier protein) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839] locus:2078951;,locus:2084460;,locus:2065598; AT3G55640,AT3G53940,AT2G37890 mitochondrial substrate carrier family protein Os01g0143100 protein (Peroxidase Ca-dependent solute carrier) (cDNA clone:002-125-D01, full insert sequence) (cDNA clone:J013104N14, full insert sequence),Mitochondrial carrier protein, expressed (Os03g0267700 protein) (cDNA clone:001-119-A04, full insert sequence) Q0JQR9,Q10NJ7 Q0JQR9_ORYSJ,Q10NJ7_ORYSJ Os01g0143100 Os01g0143100 OsJ_00329 OSNPB_010143100,Os03g0267700 LOC_Os03g16080 Os03g0267700 OSNPB_030267700 ENOG411DPTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain OSJNBa0088K19.4 protein (Os04g0433000 protein) (cDNA clone:002-147-F09, full insert sequence) Q7XUZ3 Q7XUZ3_ORYSJ Os04g0433000 OSJNBa0088K19.4 OSNPB_040433000 ENOG411DPTM APC6 B3DNN5 CDC16_ARATH Anaphase-promoting complex subunit 6 (Cell division cycle protein 16 homolog) (CDC16 homolog) (Cyclosome subunit 6) (Protein NOMEGA) DISRUPTION PHENOTYPE: Gametophytic lethal phenotype. {ECO:0000269|PubMed:14675450}. Female gametophyte defective; Embryo defective (inferred)-V. Sundaresan-2003 FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. {ECO:0000269|PubMed:14675450, ECO:0000269|PubMed:19336465}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-174184; 61762 Anaphase-promoting complex subunit 6 (Cell division cycle protein 16 homolog) (CDC16 homolog) (Cyclosome subunit 6) (Protein NOMEGA) nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; phloem or xylem histogenesis [GO:0010087]; protein ubiquitination [GO:0016567]; regulation of DNA endoreduplication [GO:0032875] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:14675450}. locus:2037523; AT1G78770 Anaphase-promoting complex subunit Os03g0236966 protein (Fragment) A0A0P0VV58 A0A0P0VV58_ORYSJ Os03g0236966 OSNPB_030236966 ENOG411DPTN Q8W4K1 TYW23_ARATH tRNA wybutosine-synthesizing protein 2/3/4 [Includes: tRNA wybutosine-synthesizing protein 3 homolog (tRNA-yW-synthesizing protein 3) (EC 2.1.1.282) (tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase); tRNA wybutosine-synthesizing protein 2 homolog (tRNA-yW-synthesizing protein 2) (EC 2.5.1.114) (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase)] FUNCTION: S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA (By similarity). {ECO:0000250}. PATHWAY: tRNA modification; wybutosine-tRNA(Phe) biosynthesis. 2.1.1.282; 2.5.1.114 110856 tRNA wybutosine-synthesizing protein 2/3/4 [Includes: tRNA wybutosine-synthesizing protein 3 homolog (tRNA-yW-synthesizing protein 3) (EC 2.1.1.282) (tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase); tRNA wybutosine-synthesizing protein 2 homolog (tRNA-yW-synthesizing protein 2) (EC 2.5.1.114) (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase)] methyltransferase activity [GO:0008168]; tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity [GO:0102522]; wybutosine biosynthetic process [GO:0031591] locus:2135069; AT4G04670 tRNA wybutosine-synthesizing protein 2 3 tRNA wybutosine-synthesizing protein 2/3/4 [Includes: tRNA wybutosine-synthesizing protein 3 homolog (tRNA-yW-synthesizing protein 3) (EC 2.1.1.282) (tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase); tRNA wybutosine-synthesizing protein 2 homolog (tRNA-yW-synthesizing protein 2) (EC 2.5.1.114) (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase)],Os07g0515000 protein (Fragment) Q8H4D4,A0A0P0X700 TYW23_ORYSJ,A0A0P0X700_ORYSJ Os07g0515000 LOC_Os07g33100 OsJ_24443 P0048D08.111,Os07g0515000 OSNPB_070515000 FUNCTION: S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA (By similarity). {ECO:0000250}. ENOG411DPTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase Os09g0376600 protein,Os10g0387400 protein Q0J258,Q338R4 Q0J258_ORYSJ,Q338R4_ORYSJ Os09g0376600 Os09g0376600 OsJ_29159 OSNPB_090376600,Os10g0387400 LOC_Os10g24850 OsJ_31345 OSNPB_100387400 ENOG411DPTI Q9C9X8,F4HVL8 Q9C9X8_ARATH,F4HVL8_ARATH Uncharacterized protein At1g68140 (Uncharacterized protein At1g68140; T23K23.1) (Uncharacterized protein T23K23.1) (Zinc finger/BTB domain protein, putative (DUF1644)),Zinc finger/BTB domain protein, putative (DUF1644) 38040,35216 Uncharacterized protein At1g68140 (Uncharacterized protein At1g68140; T23K23.1) (Uncharacterized protein T23K23.1) (Zinc finger/BTB domain protein, putative (DUF1644)),Zinc finger/BTB domain protein, putative (DUF1644) locus:2200166; AT1G68140 Protein of unknown function (DUF1644) Os02g0770600 protein (cDNA clone:J013089K11, full insert sequence),Os02g0770600 protein Q6ZH51,A0A0P0VPX1 Q6ZH51_ORYSJ,A0A0P0VPX1_ORYSJ OJ1079_F11.33-1 Os02g0770600 OJ1353_F08.2-1 OsJ_08534 OSNPB_020770600,Os02g0770600 OSNPB_020770600 ENOG411DPTJ O49378 O49378_ARATH AT4g32140/F10N7_50 (EamA-like transporter family) (Uncharacterized protein AT4g32140) (Uncharacterized protein F10N7.50) 43402 AT4g32140/F10N7_50 (EamA-like transporter family) (Uncharacterized protein AT4g32140) (Uncharacterized protein F10N7.50) integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2116657; AT4G32140 EamA-like transporter family OSJNBa0070O11.5 protein (Os04g0645600 protein) (cDNA clone:J013135P10, full insert sequence) Q7XQE4 Q7XQE4_ORYSJ Os04g0645600 Os04g0645600 OsJ_16401 OSJNBa0070O11.5 OSNPB_040645600 ENOG411DPTK DAA1 F4I5A3,Q940D1,B3H7I9 F4I5A3_ARATH,Q940D1_ARATH,B3H7I9_ARATH p-loop containing nucleoside triphosphate hydrolases superfamily protein,At1g64110/F22C12_22 (p-loop containing nucleoside triphosphate hydrolases superfamily protein) ARA:AT1G64110-MONOMER; 92550,91961,92364 p-loop containing nucleoside triphosphate hydrolases superfamily protein,At1g64110/F22C12_22 (p-loop containing nucleoside triphosphate hydrolases superfamily protein) nucleus [GO:0005634]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; pollen sperm cell differentiation [GO:0048235],ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2024522; AT1G64110 AAA-type ATPase family protein Os01g0226400 protein (cDNA clone:J033089N14, full insert sequence) Q5NAF6 Q5NAF6_ORYSJ Os01g0226400 Os01g0226400 OSNPB_010226400 P0443E07.22 P0492F05.31 ENOG411DPTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting serine threonine-protein kinase 11 CBL-interacting protein kinase 29 (EC 2.7.11.1) (OsCIPK29) Q7XIW5 CIPKT_ORYSJ CIPK29 Os07g0678300 LOC_Os07g48090 OJ1409_C08.10 OsJ_024572 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DPTU Q9FJ25 GDL81_ARATH GDSL esterase/lipase At5g41890 (EC 3.1.1.-) ARA:AT5G41890-MONOMER; 3.1.1.- 40742 GDSL esterase/lipase At5g41890 (EC 3.1.1.-) hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2153000; AT5G41890 GDSL esterase lipase Os04g0577300 protein (Fragment) Q0JAU2 Q0JAU2_ORYSJ Os04g0577300 Os04g0577300 OSNPB_040577300 ENOG411DPTV Q1JPP0,Q9LVG0,A0A1P8B527,F4IXL3 Q1JPP0_ARATH,Q9LVG0_ARATH,A0A1P8B527_ARATH,F4IXL3_ARATH Adenylyl cyclase (At4g15640),Adenylyl cyclase (At3g21465) (Putative adenyl cyclase),Adenylyl cyclase 43910,44065,37149,44508 Adenylyl cyclase (At4g15640),Adenylyl cyclase (At3g21465) (Putative adenyl cyclase),Adenylyl cyclase intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2130524;,locus:2089478; AT4G15640,AT3G21465 NA Os07g0668200 protein (Putative adenyl cyclase),Os07g0668200 protein (Fragment) Q7F0M7,A0A0P0XA74 Q7F0M7_ORYSJ,A0A0P0XA74_ORYSJ P0450A04.139 P0625E02.106 Os07g0668200 OsJ_25503 OSNPB_070668200,Os07g0668200 OSNPB_070668200 ENOG411DPTW RSY3 Q94BN3,Q3EB11,F4J7P7 Q94BN3_ARATH,Q3EB11_ARATH,F4J7P7_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At3g24560),Adenine nucleotide alpha hydrolases-like superfamily protein (At3g24560),Adenine nucleotide alpha hydrolases-like superfamily protein Embryo defective; Globular-R. Goldberg-2000 51556,50791,73502 Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At3g24560),Adenine nucleotide alpha hydrolases-like superfamily protein (At3g24560),Adenine nucleotide alpha hydrolases-like superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; ligase activity, forming carbon-nitrogen bonds [GO:0016879]; tRNA processing [GO:0008033],chloroplast [GO:0009507]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; ligase activity, forming carbon-nitrogen bonds [GO:0016879]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; suspensor development [GO:0010098]; tRNA processing [GO:0008033] locus:2091732; AT3G24560 PP-loop family Os02g0266500 protein A0A0P0VHF3 A0A0P0VHF3_ORYSJ Os02g0266500 OSNPB_020266500 ENOG411DPTP Q9T075,Q9ZQ45 Q9T075_ARATH,Q9ZQ45_ARATH At4g37880 (LisH/CRA/RING-U-box domains-containing protein) (Uncharacterized protein AT4g37880),At2g22690 (Expressed protein) (RING finger family protein) (Zinc ion binding protein) 44359,43650 At4g37880 (LisH/CRA/RING-U-box domains-containing protein) (Uncharacterized protein AT4g37880),At2g22690 (Expressed protein) (RING finger family protein) (Zinc ion binding protein) cytoplasm [GO:0005737]; GID complex [GO:0034657]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2137604;,locus:2066005; AT4G37880,AT2G22690 Protein RMD5 homolog Membrane protein-like (Os06g0588900 protein) Q69K99 Q69K99_ORYSJ Os06g0588900 Os06g0588900 B1047H05.54 OsJ_21828 OSNPB_060588900 P0633E08.1 ENOG411DPTQ GDPD2,GDPD1 Q9FLM1,Q9SGA2,F4JWX3 GDPD2_ARATH,GDPD1_ARATH,F4JWX3_ARATH Glycerophosphodiester phosphodiesterase GDPD2 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 2) (AtGDPD2),Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 1) (AtGDPD1) (Protein SENESCENCE-RELATED GENE 3),PLC-like phosphodiesterases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show reduced glycerophosphodiester phosphodiesterase activity under phosphate starvation. {ECO:0000269|PubMed:21323773}. FUNCTION: Hydrolyzes glycerolphosphoglycerol, glycerophosphocholine and glycerophosphoethanolamine in vitro. May be involved in release of inorganic phosphate (Pi) from phospholipids during Pi starvation. {ECO:0000269|PubMed:21323773}. ARA:GQT-450-MONOMER;,ARA:GQT-193-MONOMER; 3.1.4.46 42016,40715,40357 Glycerophosphodiester phosphodiesterase GDPD2 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 2) (AtGDPD2),Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 1) (AtGDPD1) (Protein SENESCENCE-RELATED GENE 3),PLC-like phosphodiesterases superfamily protein cell [GO:0005623]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; cellular phosphate ion homeostasis [GO:0030643]; glycerol metabolic process [GO:0006071]; glycerophospholipid catabolic process [GO:0046475],chloroplast [GO:0009507]; plastid [GO:0009536]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; magnesium ion binding [GO:0000287]; cellular phosphate ion homeostasis [GO:0030643]; glycerol metabolic process [GO:0006071]; glycerophospholipid catabolic process [GO:0046475],phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:21323773}.,TISSUE SPECIFICITY: Expressed in roots, shoots, rosette leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21323773}. locus:2163031;,locus:2078603; AT5G41080,AT3G02040 phosphodiesterase NA NA NA NA NA NA NA ENOG411DPTR MTERF2,EMB2219 F4IHL3,A0A1P8AXV1,A0A1P8AXV9 MTEF2_ARATH,A0A1P8AXV1_ARATH,A0A1P8AXV9_ARATH Transcription termination factor MTERF2, chloroplastic (Mitochondrial transcription termination factor 2) (Protein EMBRYO DEFECTIVE 2219),Mitochondrial transcription termination factor family protein DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at transition from the globular to heart stage. {ECO:0000269|PubMed:15266054}. Embryo defective; Transition-D. Meinke-2002 FUNCTION: Transcription termination factor involved in processing of plastid transcripts (By similarity). Essential for embryogenesis (PubMed:15266054). {ECO:0000250|UniProtKB:Q9ZT96, ECO:0000269|PubMed:15266054}. 74745,65546,65030 Transcription termination factor MTERF2, chloroplastic (Mitochondrial transcription termination factor 2) (Protein EMBRYO DEFECTIVE 2219),Mitochondrial transcription termination factor family protein chloroplast [GO:0009507]; plasmodesma [GO:0009506]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380],double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355] locus:2049329; AT2G21710 mTERF Os07g0134700 protein Q6ZDY9 Q6ZDY9_ORYSJ Os07g0134700 OsJ_23001 OSNPB_070134700 P0507H12.26 ENOG411DPTS CALS9,CALS10,GSL10 Q9SFU6,Q9SJM0,A0A178V7F9 CALS9_ARATH,CALSA_ARATH,A0A178V7F9_ARATH Callose synthase 9 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 10),Callose synthase 10 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein CHORUS) (Protein GLUCAN SYNTHASE-LIKE 8),Glucan synthase-like 10 DISRUPTION PHENOTYPE: Plants develop deformed or collapsed and inviable pollen grains. {ECO:0000269|PubMed:18315544}.,DISRUPTION PHENOTYPE: Seedling lethality with severe dwarfism. Plants develop collapsed and inviable pollen grains. {ECO:0000269|PubMed:18315544, ECO:0000269|PubMed:20430748}. Pollen grains carrying cs9-5 are gametophytic lethal.No cs9-5 homozygotes could be obtained from the self-pollination of cs9/+ heterozygotes. There was no observable difference in vegetative growth between the heterozygous mutant (cs9/+) and the wild-type plant.cs9/+ hetrozygotes exhibited precocious pollen germination inside the anthers. This phenotype was exacerbated by high humidity.,Pollen grains carrying cs9-6 are gametophytic lethal. No cs9-6 homozygotes could be obtained from the self-pollination of cs9/+ heterozygotes. There was no observable difference in vegetative growth between the heterozygous mutant (cs9/+) and the wild-type plant.cs9/+ hetrozygotes exhibited precocious pollen germination inside the anthers. This phenotype was exacerbated by high humidity.,Abnormal pollen development associated with asymmetric microspore division. Null: Male gametophyte defective; Knockdown: Dwarf-P. Schulze-Lefert-2008,Null: Male gametophyte defective; Embryo defective; Knockdown: Dwarf-P. Schulze-Lefert-2008 FUNCTION: Involved in sporophytic and gametophytic development. Required for normal plant development. During pollen formation, required for the entry of microspores into mitosis and microspore symmetric division. May be required for correct temporal and spatial control of callose deposition during pollen mitosis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals. {ECO:0000269|PubMed:18315544}.,FUNCTION: Involved in sporophytic and gametophytic development. Required for normal plant development and for the proper accumulation of callose at cell plates, cll walls and plasmodesmata. During pollen formation, required for the entry of microspores into mitosis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals. Required for proper cell division and tissue patterning throughout plant organs, including stomatal patterning. {ECO:0000269|PubMed:18315544, ECO:0000269|PubMed:20430748}. ARA:AT3G07160-MONOMER;,ARA:AT2G36850-MONOMER; 2.4.1.34 217087,218378,217380 Callose synthase 9 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 10),Callose synthase 10 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein CHORUS) (Protein GLUCAN SYNTHASE-LIKE 8),Glucan synthase-like 10 1,3-beta-D-glucan synthase complex [GO:0000148]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; callose deposition in cell wall [GO:0052543]; developmental growth [GO:0048589]; generative cell mitosis [GO:0055047]; microsporogenesis [GO:0009556]; pollen development [GO:0009555]; pollen germination [GO:0009846]; regulation of cell shape [GO:0008360]; regulation of pollen tube growth [GO:0080092],1,3-beta-D-glucan synthase complex [GO:0000148]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; developmental growth [GO:0048589]; microsporogenesis [GO:0009556]; pollen development [GO:0009555]; regulation of cell shape [GO:0008360],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075] DEVELOPMENTAL STAGE: Expressed throughout pollen development with a peak at bicellular pollen stage. {ECO:0000269|PubMed:18315544}.,DEVELOPMENTAL STAGE: Expressed throughout pollen development with a at mature pollen stage. {ECO:0000269|PubMed:18315544}. locus:2098565;,locus:2058001; AT3G07160,AT2G36850 callose synthase Os03g0119500 protein (Fragment),Os06g0113150 protein Q0DVP5,A0A0P0VSG1,A0A0P0VSB4,A0A0P0WRG1 Q0DVP5_ORYSJ,A0A0P0VSG1_ORYSJ,A0A0P0VSB4_ORYSJ,A0A0P0WRG1_ORYSJ Os03g0119500 OSNPB_030119500,Os06g0113150 OSNPB_060113150 ENOG411DPTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3133) Os06g0184600 protein (Fragment),Os01g0819700 protein (Fragment) Q0DE14,A0A0P0V9Q2 Q0DE14_ORYSJ,A0A0P0V9Q2_ORYSJ Os06g0184600 Os06g0184600 OSNPB_060184600,Os01g0819700 OSNPB_010819700 ENOG411DPTY CBSX1,CBSX2 O23193,Q9C5D0 CBSX1_ARATH,CBSX2_ARATH CBS domain-containing protein CBSX1, chloroplastic (CBS domain-containing protein 2) (AtCDCP2) (Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) (AtLEJ2),CBS domain-containing protein CBSX2, chloroplastic (CBS domain-containing protein 1) (AtCDCP1) (Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) (AtLEJ1) 25769,25956 CBS domain-containing protein CBSX1, chloroplastic (CBS domain-containing protein 2) (AtCDCP2) (Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) (AtLEJ2),CBS domain-containing protein CBSX2, chloroplastic (CBS domain-containing protein 1) (AtCDCP1) (Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) (AtLEJ1) chloroplast [GO:0009507]; cell redox homeostasis [GO:0045454],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cell redox homeostasis [GO:0045454] locus:2114970;,locus:2124276; AT4G36910,AT4G34120 CBS domain-containing protein CBSX1 chloroplastic-like Os08g0313200 protein (Putative CBS domain containing protein) (cDNA clone:J033108H05, full insert sequence),CBS domain containing protein-like (Os09g0115500 protein) (cDNA clone:001-037-H08, full insert sequence) (cDNA clone:J013043C13, full insert sequence) Q69LL7,Q6YYV0 Q69LL7_ORYSJ,Q6YYV0_ORYSJ B1136D08.130 Os08g0313200 OsJ_26849 OSNPB_080313200,Os09g0115500 Os09g0115500 OJ1310_F05.16 OsJ_28393 OSNPB_090115500 ENOG411DPTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Synaptobrevin Os12g0639800 protein A0A0P0YCQ1 A0A0P0YCQ1_ORYSJ Os12g0639800 OSNPB_120639800 ENOG411EIEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DZCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L-type lectin-domain containing receptor kinase IX.1-like Os12g0608900 protein (Protein kinase domain containing protein),Os12g0608500 protein (Protein kinase domain containing protein, expressed),Os05g0231100 protein (Fragment),Os12g0606000 protein (Fragment),Os12g0608800 protein Q2QMD1,Q2QMD5,A0A0P0WJM9,A0A0P0YCU6,A0A0P0YCX5 Q2QMD1_ORYSJ,Q2QMD5_ORYSJ,A0A0P0WJM9_ORYSJ,A0A0P0YCU6_ORYSJ,A0A0P0YCX5_ORYSJ Os12g0608900 LOC_Os12g41530 Os12g0608900 OsJ_36820 OSNPB_120608900,Os12g0608500 LOC_Os12g41490 Os12g0608500 OsJ_36816 OSNPB_120608500,Os05g0231100 OSNPB_050231100,Os12g0606000 OSNPB_120606000,Os12g0608800 OSNPB_120608800 ENOG411DZCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF702) Os05g0386201 protein (Fragment) A0A0P0WLS5 A0A0P0WLS5_ORYSJ Os05g0386201 OSNPB_050386201 ENOG411DZX6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os03g0123200 protein (RNA recognition motif family protein, expressed) (cDNA clone:J013082B19, full insert sequence) Q8H8G8 Q8H8G8_ORYSJ OJ1126B12.13 LOC_Os03g03140 Os03g0123200 OsJ_09226 OSNPB_030123200 ENOG411DZX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Glutamate receptor Q69NA5 Q69NA5_ORYSJ Os09g0431100 OSJNBa0016E03.34 OSNPB_090431100 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. ENOG411DPVX LPD1,LPD2 Q9M5K3,Q9M5K2 DLDH1_ARATH,DLDH2_ARATH Dihydrolipoyl dehydrogenase 1, mitochondrial (AtmLPD1) (mtLPD1) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 1) (Glycine cleavage system L protein 1) (Pyruvate dehydrogenase complex E3 subunit 1) (E3-1) (PDC-E3 1),Dihydrolipoyl dehydrogenase 2, mitochondrial (AtmLPD2) (mtLPD2) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 2) (Glycine cleavage system L protein 2) (Pyruvate dehydrogenase complex E3 subunit 2) (E3-2) (PDC-E3 2) DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy with LPD1. {ECO:0000269|PubMed:11598235}. FUNCTION: Lipoamide dehydrogenase is a component of the glycine decarboxylase (GDC) or glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. LPD1 is probably the protein most often associated with the glycine decarboxylase complex while LPD2 is probably incorporated into alpha-ketoacid dehydrogenase complexes. {ECO:0000269|PubMed:11598235}.,FUNCTION: Lipoamide dehydrogenase is a component of the glycine decarboxylase (GDC) or glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. LPD1 is probably the protein most often associated with the glycine decarboxylase complex while LPD2 is probably incorporated into alpha-ketoacid dehydrogenase complexes. {ECO:0000269|PubMed:11598235, ECO:0000269|PubMed:14764908}. MISCELLANEOUS: The active site is a redox-active disulfide bond. ARA:AT1G48030-MONOMER; R-ATH-204174;R-ATH-5362517;R-ATH-6783984;R-ATH-70268;R-ATH-70895;R-ATH-71064;R-ATH-71403; 1.8.1.4 53988,53986 Dihydrolipoyl dehydrogenase 1, mitochondrial (AtmLPD1) (mtLPD1) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 1) (Glycine cleavage system L protein 1) (Pyruvate dehydrogenase complex E3 subunit 1) (E3-1) (PDC-E3 1),Dihydrolipoyl dehydrogenase 2, mitochondrial (AtmLPD2) (mtLPD2) (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 2) (Glycine cleavage system L protein 2) (Pyruvate dehydrogenase complex E3 subunit 2) (E3-2) (PDC-E3 2) apoplast [GO:0048046]; mitochondrial matrix [GO:0005759]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; copper ion binding [GO:0005507]; dihydrolipoyl dehydrogenase activity [GO:0004148]; flavin adenine dinucleotide binding [GO:0050660]; zinc ion binding [GO:0008270]; cell redox homeostasis [GO:0045454]; response to cadmium ion [GO:0046686],apoplast [GO:0048046]; chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; cobalt ion binding [GO:0050897]; copper ion binding [GO:0005507]; dihydrolipoyl dehydrogenase activity [GO:0004148]; flavin adenine dinucleotide binding [GO:0050660]; zinc ion binding [GO:0008270]; cell redox homeostasis [GO:0045454]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Preferentially expressed in leaves, flowers and siliques and at a lower level in roots and stems. {ECO:0000269|PubMed:11598235}.,TISSUE SPECIFICITY: Preferentially expressed in roots, flowers and siliques and at a lower level in stems and leaves. {ECO:0000269|PubMed:11598235}. locus:2023782;,locus:2089030; AT1G48030,AT3G17240 dihydrolipoyl dehydrogenase Os05g0160000 protein (Fragment),Dihydrolipoyl dehydrogenase (EC 1.8.1.4),Os03g0662000 protein (Fragment) Q0DKJ1,Q9ASP4,A0A0N7KHS2 Q0DKJ1_ORYSJ,Q9ASP4_ORYSJ,A0A0N7KHS2_ORYSJ Os05g0160000 Os05g0160000 OSNPB_050160000,Os01g0328700 OsJ_01561 OSNPB_010328700 P0554D10.2,Os03g0662000 OSNPB_030662000 MISCELLANEOUS: The active site is a redox-active disulfide bond. {ECO:0000256|RuleBase:RU003692}. ENOG411DPVU FZR1,FZR2 Q8VZS9,Q8L3Z8 FZR1_ARATH,FZR2_ARATH Protein FIZZY-RELATED 1 (Cell cycle switch protein CCS52A2),Protein FIZZY-RELATED 2 (Cell cycle switch protein CCS52A1) DISRUPTION PHENOTYPE: Stunted plants. Impaired root growth and smaller root meristem. {ECO:0000269|PubMed:19553203}.,DISRUPTION PHENOTYPE: Reduced endoreduplication and reduced expansion in trichomes and other leaf cells. Longer roots. Root meristem contains more dividing cells with a delayed onset of endoreduplication. {ECO:0000269|PubMed:19074624, ECO:0000269|PubMed:19553203}. FUNCTION: Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Required for meristem organization and maintenance of quiescent center identity and stem cells. {ECO:0000269|PubMed:15970679, ECO:0000269|PubMed:19553203}.,FUNCTION: Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Necessary and sufficient for endoreduplication and correct cell expansion. Controls meristem size by stimulating endoreduplication in the elongation zone. {ECO:0000269|PubMed:15970679, ECO:0000269|PubMed:19074624, ECO:0000269|PubMed:19553203}. MISCELLANEOUS: FZR2 controls the induction of early rounds of endoreduplication while the remaining rounds may be mediated by FZR1 and FZR3.; MISCELLANEOUS: FZR1 and FZR2 are functional homologs, and their functional divergence in root development arises from the different expression patterns. {ECO:0000305|PubMed:19553203}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-176408;R-ATH-68949;R-ATH-69656; Ubiquitin mediated proteolysis (04120),Progesterone-mediated oocyte maturation (04914),Cell cycle - yeast (04111),Cell cycle (04110) 52330,52840 Protein FIZZY-RELATED 1 (Cell cycle switch protein CCS52A2),Protein FIZZY-RELATED 2 (Cell cycle switch protein CCS52A1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; anaphase-promoting complex binding [GO:0010997]; ubiquitin-protein transferase activator activity [GO:0097027]; cell cycle [GO:0007049]; cell division [GO:0051301]; maintenance of shoot apical meristem identity [GO:0010492]; positive regulation of DNA endoreduplication [GO:0032877]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein ubiquitination [GO:0016567]; regulation of cell size [GO:0008361],nucleus [GO:0005634]; anaphase-promoting complex binding [GO:0010997]; ubiquitin-protein transferase activator activity [GO:0097027]; cell division [GO:0051301]; cell growth [GO:0016049]; DNA endoreduplication [GO:0042023]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein ubiquitination [GO:0016567]; trichome branching [GO:0010091] DEVELOPMENTAL STAGE: Expressed from late M until late S-early G2 phases. {ECO:0000269|PubMed:15970679}. TISSUE SPECIFICITY: Expressed in the root tip, predominantly in the root cap, quiescent center cells, surrounding stem cells and columella. {ECO:0000269|PubMed:19553203}.,TISSUE SPECIFICITY: Expressed in seedlings, flowers, leaves and roots. Expressed in the differentiating cell files of the root elongation zone. {ECO:0000269|PubMed:19074624, ECO:0000269|PubMed:19553203}. locus:2137030;,locus:2127263; AT4G11920,AT4G22910 WD domain G-beta repeat Os01g0972900 protein (Putative cell cycle switch protein) Q5JM92 Q5JM92_ORYSJ Os01g0972900 Os01g0972900 OSNPB_010972900 P0518C01.37 P0698H10.11 ENOG411DPVS PRAF1,MJC20.25 Q947D2,A0A1P8BCA2 PRAF1_ARATH,A0A1P8BCA2_ARATH PH, RCC1 and FYVE domains-containing protein 1 (Protein Praf4),Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein FUNCTION: Binds to phosphatidic acid and to phosphoinositides such as PtdIns3P, PtdIns(3,4)P(2), PtdIns(3,4,5)P(3) and PtdIns(4,5)P(2). Catalyzes guanine nucleotide exchange on specific Rab proteins. {ECO:0000269|PubMed:11563980}. 120395,116952 PH, RCC1 and FYVE domains-containing protein 1 (Protein Praf4),Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein metal ion binding [GO:0046872]; phosphatidic acid binding [GO:0070300]; phosphatidylinositol binding [GO:0035091]; Rab guanyl-nucleotide exchange factor activity [GO:0017112],metal ion binding [GO:0046872] TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in stems, leaves, siliques, seeds. {ECO:0000269|PubMed:11563980}. locus:2025277;,locus:2165770; AT1G76950,AT5G42140 Regulator of chromosome condensation OSJNBa0070M12.5 protein (Os04g0686200 protein),Os05g0106700 protein (Fragment),Os01g0964800 protein (Fragment) Q7XTM0,A0A0P0WH96,A0A0P0VD89 Q7XTM0_ORYSJ,A0A0P0WH96_ORYSJ,A0A0P0VD89_ORYSJ Os04g0686200 OsJ_16701 OSJNBa0070M12.5 OSNPB_040686200,Os05g0106700 OSNPB_050106700,Os01g0964800 OSNPB_010964800 ENOG411DPVP AtMYB103 Q9SRB0 Q9SRB0_ARATH MYB transcription factor (Myb domain protein 103) (Putative MYB family transcription factor) (Putative MYB family transcription factor; 19087-20744) (Putative transcription factor) 42263 MYB transcription factor (Myb domain protein 103) (Putative MYB family transcription factor) (Putative MYB family transcription factor; 19087-20744) (Putative transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; positive regulation of syringal lignin biosynthetic process [GO:1901430]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355] locus:2195528; AT1G63910 myb-like DNA-binding domain containing protein Myb transcription factor (ATMYB4)-like protein (Os08g0151300 protein) (cDNA clone:J013114D05, full insert sequence) Q84PW8 Q84PW8_ORYSJ P0443G08.130 Os08g0151300 OsJ_26048 OSNPB_080151300 ENOG411DPVQ VIII-2,VIII-B,VIIIB,ATM2 F4K0A6,F4JIU4,A0A1P8B4A4,A0A1P8B4C4,F4K0A7 MYO2_ARATH,MYO4_ARATH,A0A1P8B4A4_ARATH,A0A1P8B4C4_ARATH,F4K0A7_ARATH Myosin-2 (AtATM2) (AtMYOS1),Myosin-4 (MYOSIN VIII B) (AtVIIIB),P-loop containing nucleoside triphosphate hydrolases superfamily protein,Myosin 2 FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). Involved in endocytosis via its action in endosomal trafficking. {ECO:0000250, ECO:0000269|PubMed:18393384}.,FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250}. 138562,129832,130013,129972,117256 Myosin-2 (AtATM2) (AtMYOS1),Myosin-4 (MYOSIN VIII B) (AtVIIIB),P-loop containing nucleoside triphosphate hydrolases superfamily protein,Myosin 2 endosome [GO:0005768]; myosin complex [GO:0016459]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048]; endocytosis [GO:0006897],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],myosin complex [GO:0016459]; ATP binding [GO:0005524]; motor activity [GO:0003774] TISSUE SPECIFICITY: Expressed in flowers, leaves and roots. {ECO:0000269|PubMed:7811972}. locus:2162550;,locus:2131769; AT5G54280,AT4G27370 myosin-J heavy chain-like Os07g0562800 protein,Os07g0562800 protein (Fragment),Os03g0578500 protein A0A0P0X7H4,A0A0P0X7M1,A0A0P0W0F6,A0A0P0X7U3 A0A0P0X7H4_ORYSJ,A0A0P0X7M1_ORYSJ,A0A0P0W0F6_ORYSJ,A0A0P0X7U3_ORYSJ Os07g0562800 OSNPB_070562800,Os03g0578500 OSNPB_030578500 ENOG411DPVJ Q7XA68,A0A1I9LNS9 Q7XA68_ARATH,A0A1I9LNS9_ARATH At1g01640 (Ribosomal protein L13 family protein) (Uncharacterized protein At3g01790),Ribosomal protein L13 family protein 23380,18186 At1g01640 (Ribosomal protein L13 family protein) (Uncharacterized protein At3g01790),Ribosomal protein L13 family protein ribosome [GO:0005840]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2082304; AT3G01790 ribosomal protein Os05g0243300 protein (Putative ribosomal protein I) (cDNA clone:002-142-F09, full insert sequence),Os05g0243200 protein (cDNA clone:006-302-D09, full insert sequence),Os05g0243200 protein (Fragment),Os08g0162033 protein,Os05g0243100 protein (Fragment) Q60E11,Q60E13,A0A0N7KKE4,A0A0P0XC97,A0A0P0WJR2 Q60E11_ORYSJ,Q60E13_ORYSJ,A0A0N7KKE4_ORYSJ,A0A0P0XC97_ORYSJ,A0A0P0WJR2_ORYSJ Os05g0243300 OSJNBa0004B23.11 OSNPB_050243300,Os05g0243200 Os05g0243200 OSJNBa0004B23.10 OSNPB_050243200,Os05g0243200 OSNPB_050243200,Os08g0162033 OSNPB_080162033,Os05g0243100 OSNPB_050243100 ENOG411DPVK ARV1,ARV2 A0A1P8AS22,A0A1P8B5I5,Q0WRA1,A0A1P8B5J5,Q5MK23,Q5MK24,A0A1P8B5H8,A0A1P8B5J3,A0A1P8ARY9,F4HQG4,A0A1P8B5K5,A0A1P8B5I8 A0A1P8AS22_ARATH,A0A1P8B5I5_ARATH,Q0WRA1_ARATH,A0A1P8B5J5_ARATH,Q5MK23_ARATH,Q5MK24_ARATH,A0A1P8B5H8_ARATH,A0A1P8B5J3_ARATH,A0A1P8ARY9_ARATH,F4HQG4_ARATH,A0A1P8B5K5_ARATH,A0A1P8B5I8_ARATH ARV1 family protein,Arv1-like protein,ARV1 family protein (Uncharacterized protein At1g01020),ARV2 (Arv1-like protein),ARV1 (ARV1 family protein) R-ATH-191273; 27207,20671,22767,21972,25950,28092,22600,19059,11704,21711,23704,29827 ARV1 family protein,Arv1-like protein,ARV1 family protein (Uncharacterized protein At1g01020),ARV2 (Arv1-like protein),ARV1 (ARV1 family protein) integral component of membrane [GO:0016021],cortical endoplasmic reticulum [GO:0032541]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; intracellular sterol transport [GO:0032366]; regulation of plasma membrane sterol distribution [GO:0097036]; sphingolipid metabolic process [GO:0006665]; sterol metabolic process [GO:0016125] locus:2117012;,locus:2200940; AT4G01510,AT1G01020 protein arv1 homolog Os03g0784300 protein A0A0P0W3W7 A0A0P0W3W7_ORYSJ Os03g0784300 OSNPB_030784300 ENOG411DPVG NUP133 F4IGA5 NU133_ARATH Nuclear pore complex protein NUP133 (Nucleoporin 133) (Nucleoporin Nup155-like) 144598 Nuclear pore complex protein NUP133 (Nucleoporin 133) (Nucleoporin Nup155-like) chloroplast [GO:0009507]; membrane [GO:0016020]; nuclear pore outer ring [GO:0031080]; nucleocytoplasmic transporter activity [GO:0005487]; structural constituent of nuclear pore [GO:0017056]; chromatin organization [GO:0006325]; mRNA transport [GO:0051028]; nuclear pore distribution [GO:0031081]; protein import into nucleus [GO:0006606]; regulation of transcription, DNA-templated [GO:0006355]; RNA export from nucleus [GO:0006405]; transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000972] locus:2051234; AT2G05120 Non-repetitive/WGA-negative nucleoporin C-terminal Nup133 nucleoporin family protein, expressed (Os03g0225500 protein),Os03g0225500 protein (Fragment) Q10PQ6,A0A0P0VUZ1 Q10PQ6_ORYSJ,A0A0P0VUZ1_ORYSJ LOC_Os03g12450 Os03g0225500 OsJ_09987 OSNPB_030225500,Os03g0225500 OSNPB_030225500 ENOG411DPVC VAT1 Q93YZ7,Q9FFF4 ILVH2_ARATH,ILVH1_ARATH Acetolactate synthase small subunit 2, chloroplastic (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS),Acetolactate synthase small subunit 1, chloroplastic (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS) (Protein valine-tolerant 1) Can germinate and establish seedlings in MS media supplemented with 2.5 mM valine. FUNCTION: Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids. Contains 2 repeats, each of them being able to activate partially the catalytic subunit. The enzyme reconstituted with the first repeat is inhibited by leucine, but not by valine or isoleucine and the enzyme reconstituted with the second repeat is not inhibited by any branched-chain amino acid. {ECO:0000269|PubMed:11389597, ECO:0000269|PubMed:11852076}.,FUNCTION: Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids but not in herbicide tolerance. {ECO:0000269|PubMed:20497381}. PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.; PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4. ARA:AT2G31810-MONOMER;,ARA:AT5G16290-MONOMER; 53873,52331 Acetolactate synthase small subunit 2, chloroplastic (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS),Acetolactate synthase small subunit 1, chloroplastic (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS) (Protein valine-tolerant 1) acetolactate synthase complex [GO:0005948]; chloroplast [GO:0009507]; cytosol [GO:0005829]; acetolactate synthase activity [GO:0003984]; isoleucine biosynthetic process [GO:0009097]; valine biosynthetic process [GO:0009099],acetolactate synthase complex [GO:0005948]; chloroplast [GO:0009507]; cytosol [GO:0005829]; acetolactate synthase activity [GO:0003984]; isoleucine biosynthetic process [GO:0009097]; leucine metabolic process [GO:0006551]; valine biosynthetic process [GO:0009099]; valine metabolic process [GO:0006573] TISSUE SPECIFICITY: Expressed in roots in the vascular tissuem in cells around the quiescent center, in floral organs at the tips of young siliques and in the joint region between the silique and the pedicel. Barely detectable in mature leaves or siliques. {ECO:0000269|PubMed:20497381}. locus:2045248;,locus:2171292; AT2G31810,AT5G16290 Acetolactate synthase small subunit Os02g0608600 protein (Fragment),Os11g0256000 protein (Fragment),Os11g0256050 protein,Os02g0608550 protein Q0DZN5,A0A0P0Y0W5,A0A0P0Y131,A0A0P0VLH5 Q0DZN5_ORYSJ,A0A0P0Y0W5_ORYSJ,A0A0P0Y131_ORYSJ,A0A0P0VLH5_ORYSJ Os02g0608600 Os02g0608600 OSNPB_020608600,Os11g0256000 OSNPB_110256000,Os11g0256050 OSNPB_110256050,Os02g0608550 OSNPB_020608550 ENOG411DPV4 Q9ZVB6 Q9ZVB6_ARATH Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g41250) 32311 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (Uncharacterized protein At2g41250) hydrolase activity [GO:0016787]; metabolic process [GO:0008152] locus:2040272; AT2G41250 Haloacid dehalogenase-like hydrolase domain-containing protein Os07g0659400 protein (Fragment),Os03g0356498 protein (Fragment) A0A0P0X9N9,A0A0P0VYD5 A0A0P0X9N9_ORYSJ,A0A0P0VYD5_ORYSJ Os07g0659400 OSNPB_070659400,Os03g0356498 OSNPB_030356498 ENOG411DPV1 NET2C,NET2A,NET2D,NET2B Q8LPQ1,P0DMS1,F4IJK1,F4I131 NET2C_ARATH,NET2A_ARATH,NET2D_ARATH,NET2B_ARATH Protein NETWORKED 2C,Protein NETWORKED 2A,Protein NETWORKED 2D,Protein NETWORKED 2B FUNCTION: Plant-specific actin binding protein. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000305|PubMed:22840520}.,FUNCTION: Plant-specific actin binding protein. Associates with F-actin at the plasma membrane in growing pollen tubes. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000269|PubMed:22840520}. 96883,108032,108171,106069 Protein NETWORKED 2C,Protein NETWORKED 2A,Protein NETWORKED 2D,Protein NETWORKED 2B actin binding [GO:0003779],plasma membrane [GO:0005886]; actin binding [GO:0003779] TISSUE SPECIFICITY: Expressed specifically in pollen. {ECO:0000269|PubMed:22840520}. locus:2142554;,locus:2041203;,locus:2024271; AT5G10500,AT1G58215,AT2G22560,AT1G09720 Kinase interacting Os05g0466200 protein (Putative kinase interacting family protein) (cDNA clone:J023133J17, full insert sequence),Os01g0835800 protein (Putative kinase interacting protein 1),Os01g0976500 protein (Fragment),Os05g0119400 protein Q6I5J6,Q5QMF3,A0A0N7KEI0,A0A0P0WHK5 Q6I5J6_ORYSJ,Q5QMF3_ORYSJ,A0A0N7KEI0_ORYSJ,A0A0P0WHK5_ORYSJ Os05g0466200 Os05g0466200 OJ1387_F08.5 OsJ_18846 OSJNBa0009E21.9 OSNPB_050466200,Os01g0835800 OsJ_03993 OSNPB_010835800 P0506B12.22,Os01g0976500 OSNPB_010976500,Os05g0119400 OSNPB_050119400 ENOG411E3AS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411E3AW A0MFL4 LOR17_ARATH Protein LURP-one-related 17 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 24794 Protein LURP-one-related 17 locus:2160427; AT5G41590 LURP-one-related 17-like NA NA NA NA NA NA NA ENOG411E3AU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0153900 protein),Expressed protein (Os11g0153300 protein) (cDNA clone:006-308-E10, full insert sequence) Q2QXK1,Q53LU7 Q2QXK1_ORYSJ,Q53LU7_ORYSJ Os12g0153900 LOC_Os12g05770 Os12g0153900 OSNPB_120153900,Os11g0153300 LOC_Os11g05530 Os11g0153300 OsJ_32998 OSNPB_110153300 ENOG411E3AT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os08g0434700 protein (Fragment) Q0J5H1 Q0J5H1_ORYSJ Os08g0434700 Os08g0434700 OSNPB_080434700 ENOG411E3AZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein Fiber protein Fb19, putative, expressed (Os12g0552500 protein) (cDNA clone:J013066N15, full insert sequence),Fiber protein Fb19, putative, expressed (Os12g0552400 protein) (cDNA clone:J023047P03, full insert sequence) Q2QNV2,Q2QNV3 Q2QNV2_ORYSJ,Q2QNV3_ORYSJ Os12g0552500 LOC_Os12g36640 Os12g0552500 OsJ_36443 OSNPB_120552500,Os12g0552400 LOC_Os12g36630 Os12g0552400 OsJ_36442 OSNPB_120552400 ENOG411E3AA BEE1,BEE3 Q8GZ13,Q8GWK7,F4HS06,A0A1P8AQ55 BEE1_ARATH,BEE3_ARATH,F4HS06_ARATH,A0A1P8AQ55_ARATH Transcription factor BEE 1 (Basic helix-loop-helix protein 44) (AtbHLH44) (bHLH 44) (Protein Brassinosteroid enhanced expression 1) (Transcription factor EN 77) (bHLH transcription factor bHLH044),Transcription factor BEE 3 (Basic helix-loop-helix protein 50) (AtbHLH50) (bHLH 50) (Protein Brassinosteroid enhanced expression 3) (Transcription factor EN 76) (bHLH transcription factor bHLH050),BR enhanced expression 3,BR enhanced expression 1 DISRUPTION PHENOTYPE: No visible phenotype. Redundant with BEE2 and BEE3. {ECO:0000269|PubMed:12454087}.,DISRUPTION PHENOTYPE: No visible phenotype. Redundant with BEE1 and BEE2. {ECO:0000269|PubMed:12454087}. FUNCTION: Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. 29364,29499,29370,27750 Transcription factor BEE 1 (Basic helix-loop-helix protein 44) (AtbHLH44) (bHLH 44) (Protein Brassinosteroid enhanced expression 1) (Transcription factor EN 77) (bHLH transcription factor bHLH044),Transcription factor BEE 3 (Basic helix-loop-helix protein 50) (AtbHLH50) (bHLH 50) (Protein Brassinosteroid enhanced expression 3) (Transcription factor EN 76) (bHLH transcription factor bHLH050),BR enhanced expression 3,BR enhanced expression 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of shade avoidance [GO:1902448]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}. locus:2014144;,locus:2027809; AT1G18400,AT1G73830 transcription factor BEE NA NA NA NA NA NA NA ENOG411E3AG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_A20 Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (OsSAP6) Q852K5 SAP6_ORYSJ SAP6 ZFP38 Os03g0792900 LOC_Os03g57890 OSJNBb0060J21.18 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E3AD ATL54 Q8LFY8 ATL54_ARATH RING-H2 finger protein ATL54 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL54) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 45354 RING-H2 finger protein ATL54 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL54) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2207066; AT1G72220 finger protein NA NA NA NA NA NA NA ENOG411E3AN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh Probable calcium-binding protein CML29 (Calmodulin-like protein 29) Q5Z676 CML29_ORYSJ CML29 Os06g0691600 LOC_Os06g47640 OsJ_021585 P0532H03.18 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E3AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3A3 ERF091 O49515 ERF91_ARATH Ethylene-responsive transcription factor ERF091 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 34495 Ethylene-responsive transcription factor ERF091 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2124504; AT4G18450 transcription factor NA NA NA NA NA NA NA ENOG411E3A1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein F-box domain containing protein, expressed (Os12g0464200 protein) (Os12g0464300 protein) (cDNA clone:002-148-E01, full insert sequence),F-box domain containing protein (Os12g0463500 protein),Os12g0463700 protein Q2QRE8,Q2QRF4,A0A0P0YA04 Q2QRE8_ORYSJ,Q2QRF4_ORYSJ,A0A0P0YA04_ORYSJ Os12g0464300 LOC_Os12g27810 Os12g0464200 OSNPB_120464300,Os12g0463500 LOC_Os12g27750 OsJ_36024 OSNPB_120463500,Os12g0463700 OSNPB_120463700 ENOG411E3A0 O80964 O80964_ARATH MEF2BNB-like protein (Uncharacterized protein At2g39170) 25716 MEF2BNB-like protein (Uncharacterized protein At2g39170) locus:2056043; AT2G39170 Uncharacterised conserved protein Os08g0152500 protein (cDNA clone:001-011-F09, full insert sequence) (cDNA clone:J013118C21, full insert sequence) Q7EYH5 Q7EYH5_ORYSJ OJ1349_D05.116 Os08g0152500 OsJ_26060 OSNPB_080152500 ENOG411E3A5 A0A1P8AP81,Q8GWH4,A0A1P8AP61,A0A1P8AP49 A0A1P8AP81_ARATH,Q8GWH4_ARATH,A0A1P8AP61_ARATH,A0A1P8AP49_ARATH Got1/Sft2-like vescicle transport protein family,Got1/Sft2-like vescicle transport protein family (Uncharacterized protein At1g05785) 19533,15291,14520,14948 Got1/Sft2-like vescicle transport protein family,Got1/Sft2-like vescicle transport protein family (Uncharacterized protein At1g05785) integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] locus:504956158; AT1G05785 vesicle transport protein NFkB activating protein-like (Os02g0602800 protein) (cDNA clone:J013130O22, full insert sequence) Q6K8K1 Q6K8K1_ORYSJ Os02g0602800 OJ1669_F01.17 OSNPB_020602800 ENOG411E3A4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) Os02g0223700 protein (cDNA, clone: J100061D19, full insert sequence) Q6YVF0 Q6YVF0_ORYSJ Os02g0223700 Os02g0223700 OSNPB_020223700 P0470A03.4 P0758B01.33 ENOG411EGA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSZ1 LBO1 Q9LIF4 Q9LIF4_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g21420) (Putative ethylene-forming enzyme) (Uncharacterized protein At3g21420) ARA:AT3G21420-MONOMER; 41689 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At3g21420) (Putative ethylene-forming enzyme) (Uncharacterized protein At3g21420) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; strigolactone biosynthetic process [GO:1901601] locus:2089428; AT3G21420 oxidoreductase 2OG-Fe(II) oxygenase family protein Os01g0935400 protein (Putative ethylene-forming enzyme) Q942Y0 Q942Y0_ORYSJ Os01g0935400 Os01g0935400 OsJ_04679 OSNPB_010935400 P0492G09.22 ENOG411DSZN MAP70.5 Q8GYX3 MP705_ARATH Microtubule-associated protein 70-5 (AtMAP70-5) (70 kDa microtubule-associated protein 5) FUNCTION: Plant-specific protein that interact with microtubules and regulates microtubule dynamics. May play a role in anisotropic cell expansion and organ growth. In association with MAP70.1, is essential for the normal banding pattern of secondary cell wall and for the proper development of xylem tracheary elements and wood formation. {ECO:0000269|PubMed:17567681, ECO:0000269|PubMed:20399097}. MISCELLANEOUS: Plant silencing MAP70.5 show reduced inflorescence stem length and diameter, and inhibition of cell expansion. Over-expression of MAP70.5 causes epidermal cells to swell, stunted growth and induces right-handed organ twisting. 58521 Microtubule-associated protein 70-5 (AtMAP70-5) (70 kDa microtubule-associated protein 5) cytoplasm [GO:0005737]; microtubule [GO:0005874]; microtubule binding [GO:0008017]; cell wall organization [GO:0071555]; cytoskeleton organization [GO:0007010]; plant-type cell wall biogenesis [GO:0009832]; xylem and phloem pattern formation [GO:0010051] locus:2130734; AT4G17220 Myosin II heavy chain-like NA NA NA NA NA NA NA ENOG411DSZI MJC20.8 Q9FHY5 Q9FHY5_ARATH At5g41980 (Emb|CAB72466.1) (Nuclease) (Uncharacterized protein At5g41980) 42805 At5g41980 (Emb|CAB72466.1) (Nuclease) (Uncharacterized protein At5g41980) locus:2165775; AT5G41980 Plant transposon protein Os01g0894100 protein (Unknow protein) (cDNA clone:002-182-D08, full insert sequence),Os04g0422900 protein,Os10g0126100 protein (Fragment),Os12g0299600 protein,Os10g0460733 protein,Os03g0643050 protein (Fragment),Os09g0122100 protein,Os04g0471100 protein,Os06g0190950 protein,Os07g0116050 protein,Os10g0468250 protein,Os06g0481850 protein (Fragment),Os05g0252801 protein (Fragment) Q6I5V9,A0A0P0WAF9,A0A0N7KRD6,A0A0P0Y9B7,A0A0P0XUX8,A0A0P0W0W1,A0A0P0XJ67,A0A0P0WBI7,A0A0P0WU01,A0A0N7KMU7,A0A0P0XVV1,A0A0P0WX32,A0A0P0WJT7 Q6I5V9_ORYSJ,A0A0P0WAF9_ORYSJ,A0A0N7KRD6_ORYSJ,A0A0P0Y9B7_ORYSJ,A0A0P0XUX8_ORYSJ,A0A0P0W0W1_ORYSJ,A0A0P0XJ67_ORYSJ,A0A0P0WBI7_ORYSJ,A0A0P0WU01_ORYSJ,A0A0N7KMU7_ORYSJ,A0A0P0XVV1_ORYSJ,A0A0P0WX32_ORYSJ,A0A0P0WJT7_ORYSJ Os01g0894100 Os01g0894100 OJ1076_H08.16 OSJNBb0012L23.5 OSNPB_010894100,Os04g0422900 OSNPB_040422900,Os10g0126100 OSNPB_100126100,Os12g0299600 OSNPB_120299600,Os10g0460733 OSNPB_100460733,Os03g0643050 OSNPB_030643050,Os09g0122100 OSNPB_090122100,Os04g0471100 OSNPB_040471100,Os06g0190950 OSNPB_060190950,Os07g0116050 OSNPB_070116050,Os10g0468250 OSNPB_100468250,Os06g0481850 OSNPB_060481850,Os05g0252801 OSNPB_050252801 ENOG411DWF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Cbl proto-oncogene E3 ubiquitin protein ligase-like 1 NA NA NA NA NA NA NA ENOG411DWF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin 5'-adenylylsulfate reductase-like 4 (Adenosine 5'-phosphosulfate reductase-like 4) (APR-like 4) (OsAPRL4),Os08g0412401 protein (Fragment) Q5DJV7,A0A0P0XFS8 APRL4_ORYSJ,A0A0P0XFS8_ORYSJ APRL4 Os08g0412401 LOC_Os08g31814 OSJNBa0007M04.15,Os08g0412401 OSNPB_080412401 ENOG411EGAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cAMP-regulated phosphoprotein/endosulfine conserved region Os01g0305200 protein (cDNA clone:001-102-C01, full insert sequence) Q657U9 Q657U9_ORYSJ Os01g0305200 OSNPB_010305200 P0475H04.34 P0552C05.13 ENOG411DWFC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial outer membrane protein Mitochondrial outer membrane protein porin 2 (Voltage-dependent anion-selective channel protein 2) (OsVDAC2) Q6L5I5 VDAC2_ORYSJ VDAC2 Os05g0536200 LOC_Os05g45950 OJ1741_B01.9 OsJ_19349 FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). {ECO:0000250}. ENOG411DQGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Os02g0184700 protein (Putative cytochrome P450),Os02g0186200 protein (Putative cytochrome P450),Os02g0184900 protein (Putative cytochrome P450),Os02g0185300 protein (Putative cytochrome P450) (cDNA clone:J023002L07, full insert sequence),Os02g0185200 protein (Putative cytochrome P450),Os02g0187000 protein,Os02g0185500 protein,Os02g0185900 protein (Fragment),Os02g0184600 protein Q6ZII0,Q6ZIG7,Q6ZIH6,Q6ZIH1,Q6ZIH2,A0A0P0VFR0,A0A0P0VFT7,A0A0P0VFQ4,A0A0P0VFK0 Q6ZII0_ORYSJ,Q6ZIG7_ORYSJ,Q6ZIH6_ORYSJ,Q6ZIH1_ORYSJ,Q6ZIH2_ORYSJ,A0A0P0VFR0_ORYSJ,A0A0P0VFT7_ORYSJ,A0A0P0VFQ4_ORYSJ,A0A0P0VFK0_ORYSJ Os02g0184700 OJ1115_B01.2 OSNPB_020184700,Os02g0186200 OJ1073_F05.12 OJ1115_B01.23 OSNPB_020186200,Os02g0184900 Os02g0184900 OJ1115_B01.6 OSNPB_020184900,Os02g0185300 Os02g0185300 OJ1073_F05.2 OJ1115_B01.13 OSNPB_020185300,Os02g0185200 Os02g0185200 OJ1115_B01.11 OSNPB_020185200,Os02g0187000 OSNPB_020187000,Os02g0185500 OSNPB_020185500,Os02g0185900 OSNPB_020185900,Os02g0184600 OSNPB_020184600 ENOG411DQGV VDAC4 Q9FKM2 VDAC4_ARATH Mitochondrial outer membrane protein porin 4 (Voltage-dependent anion-selective channel protein 4) (AtVDAC4) (VDAC-4) DISRUPTION PHENOTYPE: Dwarf plants with lesion mimic phenotype and increased expression of the pathogenesis-related genes PR1, PR2 and PR5. Delayed flowering, impaired development of anthers and short siliques with sterile seeds. {ECO:0000269|PubMed:21705391}. FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant growth and development at the vegetative and reproductive stages. Is important for leaf and pollen development and mitochondrial membrane potential steady state. May be involved in disease resistance. {ECO:0000250, ECO:0000269|PubMed:21705391}. Parkinson's disease (05012),HTLV-I infection (05166),Huntington's disease (05016),Calcium signaling pathway (04020) 29505 Mitochondrial outer membrane protein porin 4 (Voltage-dependent anion-selective channel protein 4) (AtVDAC4) (VDAC-4) membrane [GO:0016020]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; pore complex [GO:0046930]; porin activity [GO:0015288]; voltage-gated anion channel activity [GO:0008308]; regulation of growth [GO:0040008]; response to bacterium [GO:0009617] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:21705391}. locus:2174517; AT5G57490 outer membrane protein porin Mitochondrial outer membrane protein porin 6 (Voltage-dependent anion-selective channel protein 6) (OsVDAC6) Q10S27 VDAC6_ORYSJ VDAC6 Os03g0137500 LOC_Os03g04460 FUNCTION: Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). {ECO:0000250}. ENOG411DQGW CPR5 Q9LV85 CPR5_ARATH Protein CPR-5 (Protein constitutive expression of pathogenesis-related genes 5) (Protein constitutive expression of PR genes 5) (Protein hypersenescence-1) DISRUPTION PHENOTYPE: Plants are more resistant to pathogens such as P.syringea and P.parasitica and develops spontaneous lesions. {ECO:0000269|PubMed:9338960}. Spontaneous chlorotic lesions; Abnormal trichome development-M. Hulskamp-2001 FUNCTION: May play a role in transcriptional processes (PubMed:21875893). Regulates negatively the senescence and chlorotic lesions induced by biotic (e.g. pathogens) and abiotic (e.g. sugars, darkness) agents, probably by controlling programmed cell death (pcd) (PubMed:11846876,PubMed:9338960, Ref.6, PubMed:11728314). Negative regulator of plant programmed cell death (PCD) and effector-triggered immunity (ETI) (PubMed:25455564). Promotes cell division and endoreduplication (e.g. in trichomes) (PubMed:11728314). {ECO:0000269|PubMed:11728314, ECO:0000269|PubMed:11846876, ECO:0000269|PubMed:25455564, ECO:0000269|PubMed:9338960, ECO:0000269|Ref.6, ECO:0000305|PubMed:21875893}. 63112 Protein CPR-5 (Protein constitutive expression of pathogenesis-related genes 5) (Protein constitutive expression of PR genes 5) (Protein hypersenescence-1) integral component of membrane [GO:0016021]; membrane [GO:0016020]; nuclear membrane [GO:0031965]; nucleus [GO:0005634]; defense response [GO:0006952]; leaf senescence [GO:0010150]; photoperiodism, flowering [GO:0048573]; sugar mediated signaling pathway [GO:0010182]; systemic acquired resistance [GO:0009627]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11846876}. locus:2177699; AT5G64930 NA Os02g0770100 protein (Fragment),Os01g0918500 protein Q0DX76,A0A0P0VC62 Q0DX76_ORYSJ,A0A0P0VC62_ORYSJ Os02g0770100 Os02g0770100 OSNPB_020770100,Os01g0918500 OSNPB_010918500 ENOG411DQGP CEP1 Q9FGR9,Q9SIE8 CEP1_ARATH,Q9SIE8_ARATH KDEL-tailed cysteine endopeptidase CEP1 (EC 3.4.22.-) (Cysteine proteinase CP56) (AtCP56),Cysteine proteinases superfamily protein (Putative cysteine proteinase) DISRUPTION PHENOTYPE: Reduced male fertility due to impaired pollen development and abnormal pollen exine (PubMed:25035401). Enhanced susceptibility to powdery mildew caused by the biotrophic ascomycete Erysiphe cruciferarum (PubMed:24605116). {ECO:0000269|PubMed:24605116, ECO:0000269|PubMed:25035401}. FUNCTION: Possesses protease activity in vitro (PubMed:25035401). Involved in the final stage of developmental programmed cell death and in intercalation of new cells. Cleaves extensins, thus probably supporting the final cell collapse (PubMed:21632425). During the compatible interaction with the biotrophic powdery mildew fungus Erysiphe cruciferarum, involved in the control of late epidermal cell death that limits growth and susceptibility to the parasite (PubMed:24605116). During anther development, involved in tapetal programmed cell death (PCD), leading to degeneration of tapetal cells and functional pollen formation (PubMed:25035401). {ECO:0000269|PubMed:21632425, ECO:0000269|PubMed:24605116, ECO:0000269|PubMed:25035401}. 3.4.22.- 40708,12191 KDEL-tailed cysteine endopeptidase CEP1 (EC 3.4.22.-) (Cysteine proteinase CP56) (AtCP56),Cysteine proteinases superfamily protein (Putative cysteine proteinase) endoplasmic reticulum [GO:0005783]; extracellular space [GO:0005615]; lysosome [GO:0005764]; plant-type cell wall [GO:0009505]; plant-type vacuole [GO:0000325]; cysteine-type endopeptidase activity [GO:0004197]; anther wall tapetum development [GO:0048658]; defense response to fungus [GO:0050832]; pollen development [GO:0009555]; programmed cell death involved in cell development [GO:0010623]; proteolysis involved in cellular protein catabolic process [GO:0051603],cysteine-type peptidase activity [GO:0008234] DEVELOPMENTAL STAGE: Expressed when organs wither and separate from the fruit or the green silique. Expressed in unpollinated, degrading ovules (PubMed:21632425). Expressed specifically in the tapetum from stages 5 to 11 of anther development (PubMed:25035401). {ECO:0000269|PubMed:21632425, ECO:0000269|PubMed:25035401}. TISSUE SPECIFICITY: Expressed in roots, stems, flowers, buds and green siliques. Found within columella, lateral root cap cells, and in the endodermis, the cortex and the epidermis during lateral root formation. Expressed in the abscission zones of the flower organs. {ECO:0000269|PubMed:21632425}. locus:2157712;,locus:2060420; AT5G50260,AT2G22160 cysteine Os08g0556900 protein (Putative cysteine proteinase) (cDNA clone:J023001J24, full insert sequence),Cysteine endopeptidase (Cysteine proteinase-rice) (EC 3.4.22.-) (Os11g0255300 protein) (Thiol protease SEN102, putative, expressed) (cDNA clone:J023099K03, full insert sequence),Os08g0556900 protein Q6ZJ18,Q7GDU7,A0A0P0XJA3 Q6ZJ18_ORYSJ,Q7GDU7_ORYSJ,A0A0P0XJA3_ORYSJ Os08g0556900 Os08g0556900 OJ1150_A11.17 OSNPB_080556900,RepA LOC_Os11g14900 Os11g0255300 OsJ_33558 OSNPB_110255300,Os08g0556900 OSNPB_080556900 ENOG411DQGQ PAPP5,PP5.2 Q84XU2,A0A1P8AY87 PPP5_ARATH,A0A1P8AY87_ARATH Serine/threonine-protein phosphatase 5 (EC 3.1.3.16),Protein phosphatase 5.2 FUNCTION: Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses, probably by enhancing their stability and their binding affinity for light signal transducers such as NDPK2. Can use para-nitrophenylphosphate (pNPP) as substrate. {ECO:0000269|PubMed:15707897}. R-ATH-5675221; 3.1.3.16 60283,60227 Serine/threonine-protein phosphatase 5 (EC 3.1.3.16),Protein phosphatase 5.2 cytoplasm [GO:0005737]; cytosol [GO:0005829]; integral component of endoplasmic reticulum membrane [GO:0030176]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine phosphatase activity [GO:0004722]; tetrapyrrole binding [GO:0046906]; chloroplast-nucleus signaling pathway [GO:0010019]; negative regulation of chlorophyll biosynthetic process [GO:1902325]; nucleocytoplasmic transport [GO:0006913]; red or far-red light signaling pathway [GO:0010017]; response to cadmium ion [GO:0046686],phosphoprotein phosphatase activity [GO:0004721] locus:2052345; AT2G42810 serine threonine-protein phosphatase Os05g0204900 protein (Putative serine/threonine phosphatase) (cDNA clone:J033071J02, full insert sequence) (cDNA clone:J033115I22, full insert sequence),Os05g0204900 protein (Fragment),Os01g0202601 protein (Fragment) Q5W6J3,A0A0P0WJ39,A0A0P0UZJ7 Q5W6J3_ORYSJ,A0A0P0WJ39_ORYSJ,A0A0P0UZJ7_ORYSJ Os05g0204900 OsJ_17493 OSJNBb0115F21.1 OSNPB_050204900,Os05g0204900 OSNPB_050204900,Os01g0202601 OSNPB_010202601 ENOG411DQGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain CBS domain containing protein-like (Os01g0920000 protein),Os01g0920000 protein (Fragment) Q5JJJ9,A0A0P0VC33 Q5JJJ9_ORYSJ,A0A0P0VC33_ORYSJ Os01g0920000 B1793G04.3 OSNPB_010920000 P0678F11.30,Os01g0920000 OSNPB_010920000 ENOG411DQGS HPT1 Q8VWJ1,A0A1P8B2S8 HPT1_ARATH,A0A1P8B2S8_ARATH Homogentisate phytyltransferase 1, chloroplastic (AtHPT1) (EC 2.5.1.115) (Tocopherol polyprenyltransferase 1) (Vitamin E pathway gene 2-1 protein) (AtVTE2-1),Homogentisate phytyltransferase 1 DISRUPTION PHENOTYPE: Reduced seed longevity, severe seedling growth defects during germination and high levels of lipid hydroperoxides and hydroxy fatty acids. {ECO:0000269|PubMed:12586887}. Although growth of the mutant is slightly inhibited the overall morphology is the same as that of wild type.,Whole plants were exposed to continuous light of high PFD (1100 mmol.m-2.s-1) at low temperature (6°C) and no lipid peroxidation could be detected even after 48 h. Semi-dwarf; Sensitive to a combination of high light and low temperature-P. Dormann-2005 FUNCTION: Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Low activity with geranylgeranyl diphosphate as substrate, but no activity with farnesyl diphosphate or solanesyl diphosphate. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation. {ECO:0000269|PubMed:11706191, ECO:0000269|PubMed:12011362, ECO:0000269|PubMed:12586887, ECO:0000269|PubMed:16258032, ECO:0000269|PubMed:16989822, ECO:0000269|PubMed:17012603, ECO:0000269|PubMed:18314499, ECO:0000269|PubMed:20691023, ECO:0000269|PubMed:20837525, ECO:0000269|PubMed:21223386}. MISCELLANEOUS: Seeds and plants overexpressing HPT1 accumulate increased levels of tocopherol. PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis. 2.5.1.115; 2.5.1.115 43909,35507 Homogentisate phytyltransferase 1, chloroplastic (AtHPT1) (EC 2.5.1.115) (Tocopherol polyprenyltransferase 1) (Vitamin E pathway gene 2-1 protein) (AtVTE2-1),Homogentisate phytyltransferase 1 chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; homogentisate phytyltransferase activity [GO:0010176]; cell wall organization [GO:0071555]; phloem sucrose loading [GO:0009915]; regulation of defense response [GO:0031347]; response to temperature stimulus [GO:0009266]; unsaturated fatty acid biosynthetic process [GO:0006636]; vitamin E biosynthetic process [GO:0010189],integral component of membrane [GO:0016021]; transferase activity, transferring alkyl or aryl (other than methyl) groups [GO:0016765] locus:2044440; AT2G18950 Homogentisate phytyltransferase Probable homogentisate phytyltransferase 1, chloroplastic (EC 2.5.1.115) (Vitamin E pathway gene 2-1 protein) (OsVTE2-1) B7FA90 HPT1_ORYSJ HPT1 VTE2-1 Os06g0658900 LOC_Os06g44840 B1047G05.17 P0677B10.32 FUNCTION: Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone (By similarity). {ECO:0000250}. ENOG411DQGX Q9STW5 MACP2_ARATH MACPF domain-containing protein At4g24290 FUNCTION: Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity. {ECO:0000250}. 67934 MACPF domain-containing protein At4g24290 plasma membrane [GO:0005886]; plant-type hypersensitive response [GO:0009626] locus:2135912; AT4G24290 MAC/Perforin domain Os07g0166100 protein (cDNA clone:J023008O18, full insert sequence),Os01g0958700 protein Q7XID1,Q5JN47 Q7XID1_ORYSJ,Q5JN47_ORYSJ P0039H02.131 OJ1641_C04.115 Os07g0166100 OsJ_23214 OSNPB_070166100,Os01g0958700 OsJ_04831 OSNPB_010958700 P0401G10.7 ENOG411DQGY SKIP32,FBP7 Q9XI00,A0A1P8AM72 SKI32_ARATH,A0A1P8AM72_ARATH F-box protein 7 (SKP1-interacting partner 32),F-box protein 7 Although the yeast homolog of AtFBP7 is reported to bind to eEF-2 the steady state levels of eEF-2 are not altered in fbp7 mutants under normal temperature conditions or in response to heat or cold stress. Impaired translation at high or low temperature-C. Schwechheimer-2006 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Required for efficient protein synthesis during temperature stress conditions. {ECO:0000250, ECO:0000269|PubMed:17240087}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664;R-ATH-983168; 38043,38025 F-box protein 7 (SKP1-interacting partner 32),F-box protein 7 mitochondrion [GO:0005739]; nucleus [GO:0005634]; pollen tube [GO:0090406]; protein ubiquitination [GO:0016567]; regulation of translation [GO:0006417]; response to cold [GO:0009409]; response to heat [GO:0009408] DEVELOPMENTAL STAGE: In seedlings, mostly localized in shoot meristems, root tips and hypocotyl. In adult plant, strongest levels observed in the vasculature, pollen, pollen tubes, and trichomes. Also found in senescencing leaves. {ECO:0000269|PubMed:17240087}. TISSUE SPECIFICITY: Expressed in leaves, flowers and stems, and, to a lower extent, in roots and siliques. {ECO:0000269|PubMed:17240087}. locus:2036932; AT1G21760 F-Box protein Os04g0431200 protein A0A0N7KJ29 A0A0N7KJ29_ORYSJ Os04g0431200 OSNPB_040431200 ENOG411DQGZ Q501A3 Q501A3_ARATH At1g76240 (DUF241 domain protein (DUF241)) (Uncharacterized protein At1g76240) 34882 At1g76240 (DUF241 domain protein (DUF241)) (Uncharacterized protein At1g76240) locus:2199736; AT1G76240 Arabidopsis protein of unknown function Os06g0725500 protein,Os07g0237900 protein Q5Z978,Q8LGY6 Q5Z978_ORYSJ,Q8LGY6_ORYSJ Os06g0725500 Os06g0725500 OsJ_22707 OSNPB_060725500 P0548E04.16,P0565A07.111 Os07g0237900 OSNPB_070237900 ENOG411DQGD OCT3,OCT2 Q9SA38,O64515 OCT3_ARATH,OCT2_ARATH Organic cation/carnitine transporter 3 (AtOCT3),Organic cation/carnitine transporter 2 (AtOCT2) FUNCTION: High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations (By similarity). {ECO:0000250}. R-ATH-112311;R-ATH-181430;R-ATH-197264;R-ATH-200425;R-ATH-2161517;R-ATH-442660;R-ATH-549127;R-ATH-561048; 57393,57750 Organic cation/carnitine transporter 3 (AtOCT3),Organic cation/carnitine transporter 2 (AtOCT2) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; organic anion transmembrane transporter activity [GO:0008514]; cellular response to cold [GO:0070417],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; organic anion transmembrane transporter activity [GO:0008514] TISSUE SPECIFICITY: Mostly expressed in siliques, mainly in young seeds. Present in stems (cortical cells and parenchyma cells), at the basis of secondary inflorescences, and at the base of trichomes. {ECO:0000269|PubMed:18710496}.,TISSUE SPECIFICITY: Weakly expressed in roots, including tips and initiation site of lateral roots, siliques and flowers, especially in pollen and stigma. {ECO:0000269|PubMed:16607029, ECO:0000269|PubMed:18702670, ECO:0000269|PubMed:18710496}. locus:2032825;,locus:2207360; AT1G16390,AT1G79360 Organic cation carnitine transporter Os07g0562400 protein (Putative organic cation transporter),Os07g0561800 protein (Fragment),Os07g0562300 protein,Os01g0330600 protein,Os01g0199350 protein Q6ZF45,Q0D5H2,A0A0P0X814,A0A0P0V1U9,A0A0P0X7B4,A0A0P0UZG0 Q6ZF45_ORYSJ,Q0D5H2_ORYSJ,A0A0P0X814_ORYSJ,A0A0P0V1U9_ORYSJ,A0A0P0X7B4_ORYSJ,A0A0P0UZG0_ORYSJ Os07g0562400 Os07g0562400 OSNPB_070562400 P0406F06.28,Os07g0561800 Os07g0561800 OSNPB_070561800,Os07g0562300 OSNPB_070562300,Os01g0330600 OSNPB_010330600,Os07g0561800 OSNPB_070561800,Os01g0199350 OSNPB_010199350 ENOG411DQGE PER55,MUA22.13 Q96509,A0A1P8BG91 PER55_ARATH,A0A1P8BG91_ARATH Peroxidase 55 (Atperox P55) (EC 1.11.1.7) (ATP20a),Peroxidase (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G14130-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35859,40533 Peroxidase 55 (Atperox P55) (EC 1.11.1.7) (ATP20a),Peroxidase (EC 1.11.1.7) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Slightly expressed in roots. locus:2174693; AT5G14130 peroxidase Peroxidase (EC 1.11.1.7) Q0J459,Q5U1H0 Q0J459_ORYSJ,Q5U1H0_ORYSJ Os08g0532700 Os08g0532700 OSNPB_080532700,prx123 Os09g0507500 OsJ_29950 OSNPB_090507500 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DQGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Isoamylase N-terminal domain containing protein Protein FLOURY ENDOSPERM 6, chloroplastic (SKIPa-interacting protein 4) Q10F03 FLO6_ORYSJ FLO6 SIP4 Os03g0686900 LOC_Os03g48170 OsJ_12152 OSJNBb0024N19.10 DISRUPTION PHENOTYPE: Slight reduction in plant height. Reduced size of the endosperm, reduced starch content of the endosperm and floury (opaque) endosperm. {ECO:0000269|PubMed:24456533}. FUNCTION: Involved in compound starch granule formation and starch synthesis in endosperm. May act as a regulatory scaffolding protein and affect starch synthesis and compound starch granule formation through direct interaction with isoamylase 1 (ISA1). Binds starch, amylopectin and amylose through its C-terminal carbohydrate-binding domain (CBM) in vitro. {ECO:0000269|PubMed:24456533}. ENOG411DQGG Q9FGZ3 Q9FGZ3_ARATH SIN-like family protein (Similarity to unknown protein) R-ATH-1834949; 77720 SIN-like family protein (Similarity to unknown protein) DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase III promoter [GO:0006383] locus:2157839; AT5G49530 DNA-directed RNA polymerase III subunit RPC5-like Os08g0268550 protein (Fragment),Os08g0268900 protein (Fragment) A0A0P0XDZ6,A0A0P0XDL2 A0A0P0XDZ6_ORYSJ,A0A0P0XDL2_ORYSJ Os08g0268550 OSNPB_080268550,Os08g0268900 OSNPB_080268900 ENOG411DQGA MRG7.15,T11I18.4 Q9FK52,Q9S828,Q9SQR8,Q9LID3,F4ISN5,F4ISN4 Q9FK52_ARATH,Q9S828_ARATH,Q9SQR8_ARATH,Q9LID3_ARATH,F4ISN5_ARATH,F4ISN4_ARATH Casein kinase-like protein (Protein kinase family protein),F20H23.2 protein (Kinase-like protein) (T11I18.4 protein),Protein kinase family protein (Putative casein kinase),Casein kinase-like protein (Protein kinase family protein) (Putative casein kinase),Protein kinase family protein 76985,32394,77994,78640,76496,76182 Casein kinase-like protein (Protein kinase family protein),F20H23.2 protein (Kinase-like protein) (T11I18.4 protein),Protein kinase family protein (Putative casein kinase),Casein kinase-like protein (Protein kinase family protein) (Putative casein kinase),Protein kinase family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360],kinase activity [GO:0016301],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2172344;,locus:2079334;,locus:2079329;,locus:2091566;,locus:2043475; AT5G18190,AT3G03930,AT3G03940,AT3G13670,AT2G25760 - CK1 includes the casein kinase 1 kinases expressed Casein kinase 1-like protein HD16 (EC 2.7.11.1) (Os03g0793500 protein) (Protein EARLY FLOWERING 1) (Protein HEADING DATE 16),Os01g0772600 protein (Putative serine/threonine protein kinase) (cDNA clone:J023029O03, full insert sequence),Os05g0200500 protein (cDNA clone:J013126I12, full insert sequence),Os01g0744300 protein (Putative serine/threonine protein kinase),Os07g0171300 protein (Putative casein kinase 1, delta isoform 1) (cDNA clone:J013062K19, full insert sequence),Os01g0198200 protein (Putative serine/threonine protein kinase) (cDNA clone:J033128C13, full insert sequence),Os01g0772600 protein (Fragment),Os01g0198200 protein (Fragment) Q852L0,Q8S1J0,B7EKD2,Q5JKV9,Q6ZA47,Q5QMY9,A0A0P0V8Q0,A0A0P0UZQ9,A0A0N7KCI1 HD16N_ORYSJ,Q8S1J0_ORYSJ,B7EKD2_ORYSJ,Q5JKV9_ORYSJ,Q6ZA47_ORYSJ,Q5QMY9_ORYSJ,A0A0P0V8Q0_ORYSJ,A0A0P0UZQ9_ORYSJ,A0A0N7KCI1_ORYSJ HD16 CKI EL1 Os03g0793500 LOC_Os03g57940 OsJ_12923 OSJNBb0060J21.12,Os01g0772600 OsJ_03624 OSNPB_010772600 P0695H10.21,Os05g0200500 OsJ_17470 OSNPB_050200500,Os01g0744300 OSJNBa0014K08.8 OSNPB_010744300 P0439E07.41,Os07g0171300 OsJ_23261 OSNPB_070171300 P0496D04.16,B1046G12.17-1 Os01g0198200 P0419B01.29-1 OSNPB_010198200,Os01g0772600 OSNPB_010772600,Os01g0198200 OSNPB_010198200 DISRUPTION PHENOTYPE: Early flowering. Enhanced response to gibberellin (GA). {ECO:0000269|PubMed:20400938}. FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins (Probable). Can phosphorylate casein on threonine residues in vitro. Involved in the regulation of flowering time through gibberellin (GA) signaling, and independently of photoperiod. Phosphorylates the DELLA protein SLR1, stabilizing SLR1 protein and sustaining SLR1 activity as repressor of GA signaling (PubMed:20400938). Required for normal development of male floral organs and grains, through modulation of GA signaling (PubMed:26202549). Targeted and repressed by the homeobox protein HAZ1 during GA signaling (PubMed:21951842). Can phosphorylate phosvitin and SLR1 in vitro. Is not required for clock function in either the presence or the absence of light signals. Involved in a genetic control pathway for photoperiodic flowering under long day (LD) conditions that includes HD1, GHD7, HD5 and HD2. Phosphorylates and activates GHD7, a major floral repressor under LD conditions. Phosphorylation of GHD7 enhances its function in the repression of EHD1, HD3A and HD3B/RFT1, and obviously delaying flowering (PubMed:23789941). {ECO:0000269|PubMed:20400938, ECO:0000269|PubMed:21951842, ECO:0000269|PubMed:23789941, ECO:0000269|PubMed:26202549, ECO:0000305}. ENOG411DQGB Q9SZB7,Q9LJK5 Q9SZB7_ARATH,Q9LJK5_ARATH Dem-like protein (Putative Dem protein) (Vacuolar import/degradation, Vid27-related protein),Dem protein (Vacuolar import/degradation, Vid27-related protein) 71629,72285 Dem-like protein (Putative Dem protein) (Vacuolar import/degradation, Vid27-related protein),Dem protein (Vacuolar import/degradation, Vid27-related protein) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886] locus:2119221;,locus:2094113; AT4G33400,AT3G19240 VID27 cytoplasmic protein Os02g0178500 protein (Putative dem protein) (cDNA clone:J033088C24, full insert sequence),Os02g0789600 protein (Putative dem protein) Q6ETM2,Q6K4M9 Q6ETM2_ORYSJ,Q6K4M9_ORYSJ Os02g0178500 OsJ_05609 OSNPB_020178500 P0544B02.5,Os02g0789600 Os02g0789600 OJ1046_F07.10 OSJNBa0054K20.36 OSNPB_020789600 ENOG411DQGC FKFBP Q9MB58 F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (6PF-2-K/Fru-2,6-P2ase) (AtF2KP) (PFK/FBPase) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] FUNCTION: Synthesis and degradation of fructose 2,6-bisphosphate. Regulates carbon partitioning between sucrose versus starch during the diurnal cycle. {ECO:0000269|PubMed:10899575, ECO:0000269|PubMed:11402203, ECO:0000269|PubMed:14871307}. ARA:AT1G07110-MONOMER; R-ATH-70171; 2.7.1.105;3.1.3.46; 2.7.1.105; 3.1.3.46 82559 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (6PF-2-K/Fru-2,6-P2ase) (AtF2KP) (PFK/FBPase) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] cytosol [GO:0005829]; plasma membrane [GO:0005886]; 6-phosphofructo-2-kinase activity [GO:0003873]; ATP binding [GO:0005524]; fructose-2,6-bisphosphate 2-phosphatase activity [GO:0004331]; starch binding [GO:2001070]; fructose 2,6-bisphosphate metabolic process [GO:0006003]; fructose 6-phosphate metabolic process [GO:0006002]; fructose metabolic process [GO:0006000]; regulation of carbon utilization [GO:0043609] locus:2007367; AT1G07110 6-phosphofructo-2-kinase 'putative 6-phosphofructo-2-kinase (EC 2.7.1.105) / fructose-2, 6-bisphosphate 2-phosphatase (EC 3.1.3.46) ('putative 6-phosphofructo-2-kinase/ fructose-2, 6-bisphosphate 2-phosphatase) (Os05g0164100 protein),Os05g0164100 protein,6-phosphofructo-2-kinase family protein, expressed (Os03g0294200 protein),Os05g0164100 protein (Fragment),Os03g0294200 protein Q75IQ9,Q0DKG9,Q10MV5,A0A0P0WIL9,A0A0P0VWD8 Q75IQ9_ORYSJ,Q0DKG9_ORYSJ,Q10MV5_ORYSJ,A0A0P0WIL9_ORYSJ,A0A0P0VWD8_ORYSJ Os05g0164100 OsJ_17237 OSJNBa0027N19.4 OSJNBb0099P06.14 OSNPB_050164100,Os05g0164100 Os05g0164100 OSNPB_050164100,Os03g0294200 LOC_Os03g18310 Os03g0294200 OSNPB_030294200,Os05g0164100 OSNPB_050164100,Os03g0294200 OSNPB_030294200 ENOG411DQGM GH9B5 Q9FXI9,Q8LCP6,A0A1P8ARN0 GUN2_ARATH,GUN10_ARATH,A0A1P8ARN0_ARATH Endoglucanase 2 (EC 3.2.1.4) (Endo-1,4-beta glucanase 2),Endoglucanase 10 (EC 3.2.1.4) (Endo-1,4-beta glucanase 10),Glycosyl hydrolase 9B5 ARA:AT1G19940-MONOMER;,ARA:AT1G75680-MONOMER; 3.2.1.4 56708,57868,46469 Endoglucanase 2 (EC 3.2.1.4) (Endo-1,4-beta glucanase 2),Endoglucanase 10 (EC 3.2.1.4) (Endo-1,4-beta glucanase 10),Glycosyl hydrolase 9B5 extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],extracellular region [GO:0005576]; plasma membrane [GO:0005886]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2035384;,locus:2005599; AT1G19940,AT1G75680 Endoglucanase Endoglucanase 18 (EC 3.2.1.4) (Endo-1,4-beta glucanase 18),Endoglucanase 24 (EC 3.2.1.4) (Endo-1,4-beta glucanase 24),Endoglucanase (EC 3.2.1.4) Q5Z9P8,Q69SG5,A0A0P0Y9L8 GUN18_ORYSJ,GUN24_ORYSJ,A0A0P0Y9L8_ORYSJ Os06g0715300 LOC_Os06g50140 P0481E08.13,Os09g0533900 LOC_Os09g36350 OJ1112_E07.17-1,Os12g0428150 OSNPB_120428150 ENOG411DQGN B5X582,F4I6E6,A0A1P8ARD6,A0A1P8ARC1 TWIH_ARATH,PRIH_ARATH,A0A1P8ARD6_ARATH,A0A1P8ARC1_ARATH Twinkle homolog protein, chloroplastic/mitochondrial (DNA helicase) (EC 3.6.4.12) (DNA primase) (EC 2.7.7.-),Primase homolog protein (EC 2.7.7.-),Nucleic acid binding protein FUNCTION: Has both DNA primase and DNA helicase activities and may be involved in organelle DNA replication. Capable of producing RNA primers of 9 to 18 bases from a single-stranded DNA template. {ECO:0000269|PubMed:23452619}.,FUNCTION: May act as a DNA primase. {ECO:0000250}. 3.6.4.12; 2.7.7.-,2.7.7.- 80403,37807,36743,37032 Twinkle homolog protein, chloroplastic/mitochondrial (DNA helicase) (EC 3.6.4.12) (DNA primase) (EC 2.7.7.-),Primase homolog protein (EC 2.7.7.-),Nucleic acid binding protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; DNA primase activity [GO:0003896]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; nucleotidyltransferase activity [GO:0016779] TISSUE SPECIFICITY: Expressed in young leaves and shoot apex tissues. Detected in developing tissues such as cotyledons, sepals, pistils and inflorescences. Nearly undetectable in mature leaves. {ECO:0000269|PubMed:23452619}. locus:2204584;,locus:2204559; AT1G30680,AT1G30660 Toprim domain-containing protein Os06g0671700 protein (Fragment) Q0DA77 Q0DA77_ORYSJ Os06g0671700 Os06g0671700 OSNPB_060671700 ENOG411DQGH F4JRR1 F4JRR1_ARATH Oligomeric golgi complex subunit-like protein R-ATH-6807878;R-ATH-6811438; 84619 Oligomeric golgi complex subunit-like protein Golgi transport complex [GO:0017119]; membrane [GO:0016020]; vacuole [GO:0005773]; protein transporter activity [GO:0008565]; Golgi organization [GO:0007030]; intra-Golgi vesicle-mediated transport [GO:0006891] locus:2126808; AT4G24840 conserved oligomeric Golgi complex Brefeldin A-sensitive Golgi protein, putative, expressed (Os03g0849600 protein) (Putative conserved oligomeric Golgi complex component) Q84LH7 Q84LH7_ORYSJ LOC_Os03g63250 Os03g0849600 OsJ_13370 OSJNBb0096M04.45 OSNPB_030849600 ENOG411DQGI ATE2,ATE1 Q9C776,Q9ZT48,A0A1I9LNK5,A0A1P8BDT6,A0A1I9LNK3 ATE2_ARATH,ATE1_ARATH,A0A1I9LNK5_ARATH,A0A1P8BDT6_ARATH,A0A1I9LNK3_ARATH Arginyl-tRNA--protein transferase 2 (Arginyltransferase 2) (R-transferase 2) (EC 2.3.2.8) (Arginine-tRNA--protein transferase 2) (AtATE2),Arginyl-tRNA--protein transferase 1 (Arginyltransferase 1) (R-transferase 1) (EC 2.3.2.8) (Arginine-tRNA--protein transferase 1) (AtATE1) (Protein DELAYED-LEAF-SENESCENCE 1),Arginyl-tRNA--protein transferase (EC 2.3.2.8) DISRUPTION PHENOTYPE: The double mutants ate1 and ate2 show reduced seed germination potential and inhibition of seedling establishment by sucrose (PubMed:19255443). The double mutants ate1 and ate2 exhibit abnormal shoot and leaf development (PubMed:19620738). {ECO:0000269|PubMed:19255443, ECO:0000269|PubMed:19620738}.,DISRUPTION PHENOTYPE: Delayed leaf senescence phenotype (PubMed:12366806). The double mutants ate1 and ate2 show reduced seed germination potential and inhibition of seedling establishment by sucrose (PubMed:19255443). The double mutants ate1 and ate2 exhibit abnormal shoot and leaf development (PubMed:19620738). {ECO:0000269|PubMed:12366806, ECO:0000269|PubMed:19255443, ECO:0000269|PubMed:19620738}. Delayed leaf senescence-S. Yoshida-2002 FUNCTION: Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Component of the N-end rule pathway with ATE1 and PRT6 (PubMed:19255443, PubMed:19620738, PubMed:22020282). The N-end rule pathway regulates seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination (PubMed:19255443). The end-rule pathway regulates various aspects of leaf and shoot development (PubMed:19620738). Involved in the oxygen-dependent N-arginylation of RAP2-12, an activator of hypoxic gene expression. This N-terminal modification leads to ubiquitination by PRT6 and subsequent degradation of RAP2-12 under aerobic conditions (PubMed:22020282). {ECO:0000269|PubMed:19255443, ECO:0000269|PubMed:19620738, ECO:0000269|PubMed:22020282}.,FUNCTION: Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Component of the N-end rule pathway with ATE2 and PRT6 (PubMed:19255443, PubMed:19620738, PubMed:22020282). The N-end rule pathway regulates seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination (PubMed:19255443). The end-rule pathway regulates various aspects of leaf and shoot development (PubMed:19620738). Involved in the oxygen-dependent N-arginylation of RAP2-12, an activator of hypoxic gene expression. This N-terminal modification leads to ubiquitination by PRT6 and subsequent degradation of RAP2-12 under aerobic conditions (PubMed:22020282). Has an important role in the progression of leaf senescence (PubMed:12366806). {ECO:0000269|PubMed:12366806, ECO:0000269|PubMed:19255443, ECO:0000269|PubMed:19620738, ECO:0000269|PubMed:22020282}.,FUNCTION: Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. {ECO:0000256|PIRNR:PIRNR037207}. ARA:AT3G11240-MONOMER;,ARA:AT5G05700-MONOMER; 2.3.2.8; 2.3.2.8 68599,71541,50745,63193,64132 Arginyl-tRNA--protein transferase 2 (Arginyltransferase 2) (R-transferase 2) (EC 2.3.2.8) (Arginine-tRNA--protein transferase 2) (AtATE2),Arginyl-tRNA--protein transferase 1 (Arginyltransferase 1) (R-transferase 1) (EC 2.3.2.8) (Arginine-tRNA--protein transferase 1) (AtATE1) (Protein DELAYED-LEAF-SENESCENCE 1),Arginyl-tRNA--protein transferase (EC 2.3.2.8) cytoplasm [GO:0005737]; arginine-tRNA ligase activity [GO:0004814]; arginyltransferase activity [GO:0004057]; ATP binding [GO:0005524]; arginyl-tRNA aminoacylation [GO:0006420]; protein arginylation [GO:0016598]; regulation of lipid catabolic process [GO:0050994]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737],cytoplasm [GO:0005737]; arginyltransferase activity [GO:0004057]; leaf senescence [GO:0010150]; protein arginylation [GO:0016598]; regulation of lipid catabolic process [GO:0050994]; regulation of seed germination [GO:0010029]; response to abscisic acid [GO:0009737],cytoplasm [GO:0005737]; arginine-tRNA ligase activity [GO:0004814]; arginyltransferase activity [GO:0004057]; ATP binding [GO:0005524]; arginyl-tRNA aminoacylation [GO:0006420]; protein arginylation [GO:0016598],arginyltransferase activity [GO:0004057]; protein arginylation [GO:0016598] locus:2074718;,locus:2166454; AT3G11240,AT5G05700 Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Does not arginylate cysteine residues (By similarity) Arginyl-tRNA--protein transferase (EC 2.3.2.8) Q688J5 Q688J5_ORYSJ Os05g0446800 Os05g0446800 OSJNBb0012G21.2 OSNPB_050446800 FUNCTION: Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. {ECO:0000256|PIRNR:PIRNR037207}. ENOG411DQGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipopolysaccharide kinase (Kdo/WaaP) family Calcium/calmodulin-dependent serine/threonine-protein kinase 1 (EC 2.7.11.17) (Calcium/calmodulin-binding serine/threonine-protein kinase) (CaM-binding protein kinase) (OsCBK),Os07g0641200 protein (Fragment),Os03g0366200 protein (Fragment) Q10KY3,A0A0P0X993,A0A0P0VYM9 CAMK1_ORYSJ,A0A0P0X993_ORYSJ,A0A0P0VYM9_ORYSJ CAMK1 Os03g0366200 LOC_Os03g25070,Os07g0641200 OSNPB_070641200,Os03g0366200 OSNPB_030366200 FUNCTION: Possesses kinase activity in vitro. {ECO:0000269|PubMed:12160464, ECO:0000269|PubMed:16842786}. ENOG411DQGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting protein kinase CBL-interacting protein kinase 30 (EC 2.7.11.1) (OsCIPK30) Q5JLQ9 CIPKU_ORYSJ CIPK30 Os01g0759200 LOC_Os01g55440 B1131G08.36 OsJ_003433 P0460E08.7 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DQG6 CLPP2 Q9FN42 CLPP2_ARATH ATP-dependent Clp protease proteolytic subunit 2, mitochondrial (EC 3.4.21.92) (ATP-dependent Clp protease proteolytic subunit 1, mitochondrial) (Endopeptidase ClpP2) (nClpP7) FUNCTION: Component of the mitochondrial ATP-dependent Clp protease (PubMed:11352464). Cleaves peptides in various proteins in a process that requires ATP hydrolysis (By similarity). Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). {ECO:0000250|UniProtKB:Q27539, ECO:0000269|PubMed:11352464}. 3.4.21.92 26283 ATP-dependent Clp protease proteolytic subunit 2, mitochondrial (EC 3.4.21.92) (ATP-dependent Clp protease proteolytic subunit 1, mitochondrial) (Endopeptidase ClpP2) (nClpP7) chloroplast thylakoid membrane [GO:0009535]; chloroplastic endopeptidase Clp complex [GO:0009840]; mitochondrion [GO:0005739]; plastid stroma [GO:0009532]; cobalt ion binding [GO:0050897]; serine-type endopeptidase activity [GO:0004252]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Constitutively expressed in leaves, shoots, roots and flowers. {ECO:0000269|PubMed:11352464}. locus:2178282; AT5G23140 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Q7XKK0,Q0JBL5,Q6H7I9 Q7XKK0_ORYSJ,Q0JBL5_ORYSJ,Q6H7I9_ORYSJ OSJNBa0038O10.7 Os04g0525600 OSNPB_040525600,Os04g0525600 Os04g0525600 OSNPB_040525600,Os02g0634500 Os02g0634500 OJ1643_A10.30 OSNPB_020634500 ENOG411DQG0 A0A1P8ANV7,Q8VZG0,B3H452 A0A1P8ANV7_ARATH,Q8VZG0_ARATH,B3H452_ARATH Transmembrane protein,At1g34630/F12K21.3 (Transmembrane protein) 35880,52784,43132 Transmembrane protein,At1g34630/F12K21.3 (Transmembrane protein) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; peroxisome [GO:0005777] locus:2009258; AT1G34630 Inherit from KOG: Transmembrane protein 135 NA NA NA NA NA NA NA ENOG411DQG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Respiratory burst NADPH oxidase Os12g0541300 protein (Respiratory burst oxidase, putative, expressed) Q2QP56 Q2QP56_ORYSJ Os12g0541300 LOC_Os12g35610 OSNPB_120541300 ENOG411DQG2 APE1L,CBBY Q5XF07,Q94K71 APE1L_ARATH,CBBY_ARATH DNA-(apurinic or apyrimidinic site) lyase (EC 3.1.-.-) (EC 4.2.99.18) (APEX1-like protein) (Apurinic-apyrimidinic endonuclease),CBBY-like protein (AtCbby) (EC 3.1.3.-) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:19172180, PubMed:25569774). Ape1l ape2 double mutants are embryo lethal (PubMed:19172180). Ape1l arp double mutants have no visible phenotype (PubMed:19172180). Zdp ape1l double mutants are embryo lethal and cause DNA hypermethylation and down-regulation of imprinted genes in the endosperm (PubMed:25569774). {ECO:0000269|PubMed:19172180, ECO:0000269|PubMed:25569774}. FUNCTION: Apurinic/apyrimidinic (AP) endonuclease involved in active DNA demethylation and gene imprinting (PubMed:25569774). According to a report, displays also an in vitro 3'-phosphatase activity (PubMed:25569774). According to another report, has no in vitro 3'-phosphatase activity (PubMed:25228464). Catalyzes the conversion of the 3'-blocking groups 3'-phosphor-alpha,beta-unsaturated aldehyde (3'-PUA) generated by ROS1 to 3'-OH (PubMed:25228464, PubMed:25569774). Has a strong non-specific affinity to DNA (PubMed:25228464). Redundant with APE2 and at least one functional allele is required for seed viability (PubMed:19172180). {ECO:0000269|PubMed:19172180, ECO:0000269|PubMed:25228464, ECO:0000269|PubMed:25569774}.,FUNCTION: Highly selective xylulose-1,5-bisphosphate (XuBP) phosphatase. Shows also activity towards ribulose-1,5-bisphosphate (RuBP) and fructose-1,6-bisphosphate (FBP), but not towards fructose-6-phosphate (F6P) or ribulose-5-phosphate (Ru5P) (PubMed:27246049). Degrades xylulose-1,5-bisphosphate, a potent inhibitor of rubisco produced by the rubisco itself (PubMed:27246049). {ECO:0000269|PubMed:27246049}. R-ATH-110357;R-ATH-110373;R-ATH-5651801;R-ATH-73933; 3.1.-.-; 4.2.99.18,3.1.3.- 41783,34246 DNA-(apurinic or apyrimidinic site) lyase (EC 3.1.-.-) (EC 4.2.99.18) (APEX1-like protein) (Apurinic-apyrimidinic endonuclease),CBBY-like protein (AtCbby) (EC 3.1.3.-) chloroplast [GO:0009507]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; double-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008311]; metal ion binding [GO:0046872]; base-excision repair [GO:0006284],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in leaves, flower buds and developing siliques. Not detected in roots. {ECO:0000269|PubMed:25228464}. locus:505006392;,locus:2101165; AT3G48425,AT3G48420 Endonuclease/Exonuclease/phosphatase family DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) Q2QTX4 Q2QTX4_ORYSJ Os12g0279600 LOC_Os12g18200 Os12g0279600 OsJ_35763 OSNPB_120279600 ENOG411DQG3 Q9SKL4 Q9SKL4_ARATH At2g15240/F15A23.2 (Expressed protein) (UNC-50 family protein) 29426 At2g15240/F15A23.2 (Expressed protein) (UNC-50 family protein) integral component of Golgi membrane [GO:0030173]; transport [GO:0006810] locus:2041829; AT2G15240 protein unc-50 homolog Os09g0109500 protein (Putative UNC50) (cDNA clone:J013107E18, full insert sequence) Q6YWA7 Q6YWA7_ORYSJ Os09g0109500 OSNPB_090109500 P0501E09.27 ENOG411DQG8 ABCB15 Q9LHD1 AB15B_ARATH ABC transporter B family member 15 (ABC transporter ABCB.15) (AtABCB15) (Multidrug resistance protein 13) (P-glycoprotein 15) Inflorescence apices have a reduction in polar auxin transport. ARA:AT3G28345-MONOMER; R-ATH-159418;R-ATH-193368;R-ATH-382556; 135641 ABC transporter B family member 15 (ABC transporter ABCB.15) (AtABCB15) (Multidrug resistance protein 13) (P-glycoprotein 15) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2088897; AT3G28345 ABC transporter NA NA NA NA NA NA NA ENOG411DQG9 UPF1 Q9FJR0 RENT1_ARATH Regulator of nonsense transcripts 1 homolog (EC 3.6.4.-) (ATP-dependent helicase UPF1) DISRUPTION PHENOTYPE: Seedling lethal. Increased expression of not only protein-coding transcripts but also many mRNA-like nonprotein-coding RNAs (mlncRNAs), including natural antisense transcript RNAs (nat-RNAs). Dwarf with curly leaves and late flowering. Photoperiod-dependent altered development and stress responses; in long days (16 hours light), altered organ morphologies (e.g. narrow and epinastic leaves with wide petiole, small rosette size, long seeds, some abnormal flowers and stunted stem growth), disturbed homeostasis of wounding-induced jasmonic acid and pathogen-elicited salicylic acid. Increased resistance to Pseudomonas syringae pv. tomato strain DC3000. {ECO:0000269|PubMed:19181858, ECO:0000269|PubMed:22025558, ECO:0000269|PubMed:22127866, ECO:0000269|PubMed:22353561}. reduced sugar-induced expression of beta-Amylase and shows pleiotropic phenotypes such as early flowering; short day-sensitive growth; and seed germination that is hypersensitive to glucose and abscisic acid and resistant to mannose Null: Seedling lethal; Knockdown: Large seeds-K. Nakamura-2006 FUNCTION: Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons (premature termination codon PTC) by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. Eliminates the production of nonsense-containing RNAs (ncRNAs). Required for plant development and adaptation to environmental stresses, including plant defense and response to wounding. {ECO:0000269|PubMed:19181858, ECO:0000269|PubMed:22025558, ECO:0000269|PubMed:22127866, ECO:0000269|PubMed:22353561, ECO:0000269|PubMed:22974464}. R-ATH-975956;R-ATH-975957; 3.6.4.- 136868 Regulator of nonsense transcripts 1 homolog (EC 3.6.4.-) (ATP-dependent helicase UPF1) cytoplasm [GO:0005737]; cytosol [GO:0005829]; P-body [GO:0000932]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; defense response to bacterium [GO:0042742]; jasmonic acid mediated signaling pathway [GO:0009867]; long-day photoperiodism [GO:0048571]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; response to wounding [GO:0009611]; salicylic acid mediated signaling pathway [GO:0009863]; sugar mediated signaling pathway [GO:0010182] locus:2171007; AT5G47010 regulator of nonsense transcripts 1 Os07g0495900 protein (Fragment) Q0D6B1,A0A0P0X6D3,A0A0P0X6Q1,A0A0P0X661 Q0D6B1_ORYSJ,A0A0P0X6D3_ORYSJ,A0A0P0X6Q1_ORYSJ,A0A0P0X661_ORYSJ Os07g0495900 Os07g0495900 OSNPB_070495900,Os07g0495900 OSNPB_070495900 ENOG411E05D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Carboxypeptidase (EC 3.4.16.-) Q10QL8,Q10QL9 Q10QL8_ORYSJ,Q10QL9_ORYSJ Os03g0192100 LOC_Os03g09190 OSNPB_030192100,Os03g0192100 LOC_Os03g09190 OsJ_09735 OSNPB_030192100 ENOG411E05E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0301700 protein (Putative DNA-binding protein) (cDNA clone:J023104I21, full insert sequence),Os12g0442700 protein (Fragment),Os01g0301700 protein Q94CZ7,Q0INJ5,A0A0P0V1I9 Q94CZ7_ORYSJ,Q0INJ5_ORYSJ,A0A0P0V1I9_ORYSJ Os01g0301700 Os01g0301700 OsJ_01442 OSNPB_010301700 P0682B08.30,Os12g0442700 Os12g0442700 OSNPB_120442700,Os01g0301700 OSNPB_010301700 ENOG411E72C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E72A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0356540 protein (Fragment) A0A0P0VYG5 A0A0P0VYG5_ORYSJ Os03g0356540 OSNPB_030356540 ENOG411E72H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0412700 protein (cDNA clone:001-102-E07, full insert sequence) Q6ES39 Q6ES39_ORYSJ Os09g0412700 OJ1294_G06.34 OSNPB_090412700 P0643D11.9 ENOG411E72S MXC9.20 Q6NQD2,F4K0V9 Q6NQD2_ARATH,F4K0V9_ARATH At5g12240 (Octanoyltransferase) (mRNA, clone: RAFL22-05-F16),Octanoyltransferase 13257,7820 At5g12240 (Octanoyltransferase) (mRNA, clone: RAFL22-05-F16),Octanoyltransferase transferase activity [GO:0016740],cytosol [GO:0005829]; transferase activity [GO:0016740] locus:2177078; AT5G12240 NA Os07g0641800 protein Q0D477 Q0D477_ORYSJ Os07g0641800 Os07g0641800 OSNPB_070641800 ENOG411E72P Q9LY88,A0A1R7T3K1 Q9LY88_ARATH,A0A1R7T3K1_ARATH At5g14410 (Uncharacterized protein At5g14410) (Uncharacterized protein F18O22_200),Uncharacterized protein 15593,18266 At5g14410 (Uncharacterized protein At5g14410) (Uncharacterized protein F18O22_200),Uncharacterized protein locus:2145628; AT5G14410 NA Os01g0938400 protein (cDNA clone:001-102-D10, full insert sequence) Q5JLQ4 Q5JLQ4_ORYSJ Os01g0938400 B1150F11.4 OSNPB_010938400 P0504E02.28 ENOG411E72Q Q9ZUR8,Q0WKY9 Q9ZUR8_ARATH,Q0WKY9_ARATH Uncharacterized protein At2g37490 21116,20988 Uncharacterized protein At2g37490 locus:2049746; AT2G37480 NA NA NA NA NA NA NA NA ENOG411E723 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os12g0620100 protein A0A0P0YC54 A0A0P0YC54_ORYSJ Os12g0620100 OSNPB_120620100 ENOG411E726 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0427125 protein A0A0P0XMV3 A0A0P0XMV3_ORYSJ Os09g0427125 OSNPB_090427125 ENOG411E724 Q9LZE0 Q9LZE0_ARATH Transmembrane protein (Uncharacterized protein At5g03460) (Uncharacterized protein F12E4_230) 9811 Transmembrane protein (Uncharacterized protein At5g03460) (Uncharacterized protein F12E4_230) integral component of membrane [GO:0016021] locus:2831864; AT5G03460 NA Os02g0823600 protein Q6K9X2 Q6K9X2_ORYSJ Os02g0823600 Os02g0823600 OJ1063_D06.2 OJ1136_C04.10 OSNPB_020823600 ENOG411E725 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQN2 GER2,GER1 Q9LMU0,O49213,B9DH36 FCL2_ARATH,FCL1_ARATH,B9DH36_ARATH Putative GDP-L-fucose synthase 2 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 2) (AtGER2),GDP-L-fucose synthase 1 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 1) (AtFX) (AtGER1),AT1G17890 protein (NAD(P)-binding Rossmann-fold superfamily protein) FUNCTION: Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. {ECO:0000269|PubMed:16650000}.,FUNCTION: Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. Not involved in the synthesis of GDP-L-galactose from GDP-D-manose. {ECO:0000269|PubMed:10758496}. PATHWAY: Nucleotide-sugar biosynthesis; GDP-L-fucose biosynthesis via de novo pathway; GDP-L-fucose from GDP-alpha-D-mannose: step 2/2. ARA:AT1G73250-MONOMER;MetaCyc:AT1G73250-MONOMER; R-ATH-6787639; 1.1.1.271; 1.1.1.271 36227,35570,35422 Putative GDP-L-fucose synthase 2 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 2) (AtGER2),GDP-L-fucose synthase 1 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 1) (AtFX) (AtGER1),AT1G17890 protein (NAD(P)-binding Rossmann-fold superfamily protein) coenzyme binding [GO:0050662]; GDP-L-fucose synthase activity [GO:0050577]; isomerase activity [GO:0016853]; 'de novo' GDP-L-fucose biosynthetic process [GO:0042351],coenzyme binding [GO:0050662]; GDP-L-fucose synthase activity [GO:0050577]; isomerase activity [GO:0016853]; 'de novo' GDP-L-fucose biosynthetic process [GO:0042351]; L-fucose biosynthetic process [GO:0006005],coenzyme binding [GO:0050662]; oxidoreductase activity [GO:0016491]; nucleotide-sugar biosynthetic process [GO:0009226] TISSUE SPECIFICITY: Highly expressed in roots and flowers, less abundant in leaves, stems and siliques. {ECO:0000269|PubMed:10758496}. locus:2030973;,locus:2197264; AT1G17890,AT1G73250 Gdp-l-fucose synthase Probable GDP-L-fucose synthase 1 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 1) Q67WR2 FCL1_ORYSJ Os06g0652400 LOC_Os06g44270 OsJ_22191 OSJNBa0085J13.7 FUNCTION: Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. {ECO:0000250|UniProtKB:O49213}. ENOG411DQNC RHD3 Q9FKE9,P93042,Q9SSN0,A0A1P8ASL0 RHD32_ARATH,RHD3_ARATH,RHD31_ARATH,A0A1P8ASL0_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2 (EC 3.6.5.-) (Protein SEY1 homolog 3),Protein ROOT HAIR DEFECTIVE 3 (EC 3.6.5.-) (Protein FRAGILE FIBER 4) (Protein SEY1 homolog 1),Protein ROOT HAIR DEFECTIVE 3 homolog 1 (EC 3.6.5.-) (Protein SEY1 homolog 2),Protein ROOT HAIR DEFECTIVE 3 homolog (EC 3.6.5.-) (Protein SEY1 homolog) DISRUPTION PHENOTYPE: Reduced root and root hair length due to defect in epidermal cell growth and enlargement. Reduced size of vacuole and increase in the proportion of cytoplasm in root hair cells. Strong reduction in the cell wall thickness of fibers, vessels and pith cells in the inflorescence stems. Reduced cellulose content and altered composition of the cell wall. Altered organization of the actin cytoskeleton. {ECO:0000269|PubMed:12844267, ECO:0000269|PubMed:9084218, ECO:0000269|PubMed:9087433}. Reduced rates of root elongation. Root hairs are significantly shorter than wild-type root hairs. Roots do not wave or skew on hard-agar surfaces. Abnormal root hair morphology-J. Schiefelbein-1997 FUNCTION: Probable GTP-binding protein that may be involved in cell development. {ECO:0000255|HAMAP-Rule:MF_03109}.,FUNCTION: Probable GTP-binding protein involved in cell wall expansion. Required for appropriate root and root hair cells enlargement. May inhibit vacuole enlargement during root hair cell expansion. Plays a role in cell wall biosynthesis and actin organization. Seems to act independently from auxin and ethylene pathways. May regulate membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). {ECO:0000269|PubMed:12068108, ECO:0000269|PubMed:12844267, ECO:0000269|PubMed:14731265, ECO:0000269|PubMed:15908600, ECO:0000269|PubMed:9084218, ECO:0000269|PubMed:9087433}.,FUNCTION: Probable GTP-binding protein that may be involved in cell development. {ECO:0000256|HAMAP-Rule:MF_03109}. 3.6.5.- 93570,89092,88819,75395 Protein ROOT HAIR DEFECTIVE 3 homolog 2 (EC 3.6.5.-) (Protein SEY1 homolog 3),Protein ROOT HAIR DEFECTIVE 3 (EC 3.6.5.-) (Protein FRAGILE FIBER 4) (Protein SEY1 homolog 1),Protein ROOT HAIR DEFECTIVE 3 homolog 1 (EC 3.6.5.-) (Protein SEY1 homolog 2),Protein ROOT HAIR DEFECTIVE 3 homolog (EC 3.6.5.-) (Protein SEY1 homolog) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787],cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; actin cytoskeleton organization [GO:0030036]; cell tip growth [GO:0009932]; ER to Golgi vesicle-mediated transport [GO:0006888]; plant-type cell wall biogenesis [GO:0009832]; root epidermal cell differentiation [GO:0010053],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; GTPase activity [GO:0003924] DEVELOPMENTAL STAGE: Expressed in the embryo throughout development. {ECO:0000269|PubMed:12068108}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12844267}.,TISSUE SPECIFICITY: Highly expressed in fiber and xylem cells. Expressed in roots, cotyledons, seedling hypocotyls, stems, pedicel, stigmatic papillae cells and anthers. {ECO:0000269|PubMed:12068108, ECO:0000269|PubMed:12844267, ECO:0000269|PubMed:9087433}.,TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:12844267}. locus:2153343;,locus:2087964;,locus:2032612; AT5G45160,AT3G13870,AT1G72960 GTP-binding protein that may be involved in cell development (By similarity) Protein ROOT HAIR DEFECTIVE 3 homolog 1 (EC 3.6.5.-) (Protein SEY1 homolog 2),Protein ROOT HAIR DEFECTIVE 3 (EC 3.6.5.-) (Protein SEY1 homolog 1),Os01g0575000 protein (Fragment) Q2QMH2,Q0JLS6,A0A0P0V4F8 RHD31_ORYSJ,RHD3_ORYSJ,A0A0P0V4F8_ORYSJ Os12g0604600 LOC_Os12g41170,RHD3 Os01g0575000 LOC_Os01g39310 B1112D09.4,Os01g0575000 OSNPB_010575000 FUNCTION: Probable GTP-binding protein that may be involved in cell development. {ECO:0000255|HAMAP-Rule:MF_03109}. ENOG411DQNB SBT4.8,SBT4.9,SBT4.12,SBT4.7,SBT4.10,SBT4.11,SBT4.13,SBT4.1,SBT4.3,SBT4.5,SBT4.4,SBT4.6,MNC17.3 Q9FIM6,Q9FIM5,Q8L7D2,F4KGD4,Q9FIM8,Q9FIG1,Q9FIG2,F4IG09,Q9FIF8,F4JA91,Q9FGU3,Q9STF7,Q9FIG3,A0A1P8B9X7,A0A1P8BDT9,A0A1P8BDQ6,F4KHS2,F4KHS1,F4KHS9 SBT48_ARATH,SBT49_ARATH,SBT4C_ARATH,SBT47_ARATH,SBT4A_ARATH,SBT4B_ARATH,SBT4D_ARATH,SBT41_ARATH,SBT43_ARATH,SBT45_ARATH,SBT44_ARATH,SBT46_ARATH,Q9FIG3_ARATH,A0A1P8B9X7_ARATH,A0A1P8BDT9_ARATH,A0A1P8BDQ6_ARATH,F4KHS2_ARATH,F4KHS1_ARATH,F4KHS9_ARATH Subtilisin-like protease SBT4.8 (EC 3.4.21.-) (Subtilase subfamily 4 member 8) (AtSBT4.8),Subtilisin-like protease SBT4.9 (EC 3.4.21.-) (Subtilase subfamily 4 member 9) (AtSBT4.9),Subtilisin-like protease SBT4.12 (EC 3.4.21.-) (Subtilase subfamily 4 member 12) (AtSBT4.12),Subtilisin-like protease SBT4.7 (EC 3.4.21.-) (Subtilase subfamily 4 member 7) (AtSBT4.7),Subtilisin-like protease SBT4.10 (EC 3.4.21.-) (Subtilase subfamily 4 member 10) (AtSBT4.10),Subtilisin-like protease SBT4.11 (EC 3.4.21.-) (Subtilase subfamily 4 member 11) (AtSBT4.11),Subtilisin-like protease SBT4.13 (EC 3.4.21.-) (Subtilase subfamily 4 member 13) (AtSBT4.13),Subtilisin-like protease SBT4.1 (EC 3.4.21.-) (Subtilase subfamily 4 member 1) (AtSBT4.1),Subtilisin-like protease SBT4.3 (EC 3.4.21.-) (Subtilase subfamily 4 member 3) (AtSBT4.3),Subtilisin-like protease SBT4.5 (EC 3.4.21.-) (Subtilase subfamily 4 member 5) (AtSBT4.5),Subtilisin-like protease SBT4.4 (EC 3.4.21.-) (Subtilase subfamily 4 member 4) (AtSBT4.4),Subtilisin-like protease SBT4.6 (EC 3.4.21.-) (Subtilase subfamily 4 member 6) (AtSBT4.6),Similarity to serine protease (Subtilisin-like serine protease-like protein),Subtilase family protein,Subtilase 4.12 3.4.21.- 76221,75957,78097,75697,74246,78895,76869,87920,78489,79061,79598,78802,18534,74474,51246,58324,77515,77855,77725 Subtilisin-like protease SBT4.8 (EC 3.4.21.-) (Subtilase subfamily 4 member 8) (AtSBT4.8),Subtilisin-like protease SBT4.9 (EC 3.4.21.-) (Subtilase subfamily 4 member 9) (AtSBT4.9),Subtilisin-like protease SBT4.12 (EC 3.4.21.-) (Subtilase subfamily 4 member 12) (AtSBT4.12),Subtilisin-like protease SBT4.7 (EC 3.4.21.-) (Subtilase subfamily 4 member 7) (AtSBT4.7),Subtilisin-like protease SBT4.10 (EC 3.4.21.-) (Subtilase subfamily 4 member 10) (AtSBT4.10),Subtilisin-like protease SBT4.11 (EC 3.4.21.-) (Subtilase subfamily 4 member 11) (AtSBT4.11),Subtilisin-like protease SBT4.13 (EC 3.4.21.-) (Subtilase subfamily 4 member 13) (AtSBT4.13),Subtilisin-like protease SBT4.1 (EC 3.4.21.-) (Subtilase subfamily 4 member 1) (AtSBT4.1),Subtilisin-like protease SBT4.3 (EC 3.4.21.-) (Subtilase subfamily 4 member 3) (AtSBT4.3),Subtilisin-like protease SBT4.5 (EC 3.4.21.-) (Subtilase subfamily 4 member 5) (AtSBT4.5),Subtilisin-like protease SBT4.4 (EC 3.4.21.-) (Subtilase subfamily 4 member 4) (AtSBT4.4),Subtilisin-like protease SBT4.6 (EC 3.4.21.-) (Subtilase subfamily 4 member 6) (AtSBT4.6),Similarity to serine protease (Subtilisin-like serine protease-like protein),Subtilase family protein,Subtilase 4.12 extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252],cytoplasm [GO:0005737]; extracellular region [GO:0005576]; nucleus [GO:0005634]; serine-type endopeptidase activity [GO:0004252]; response to jasmonic acid [GO:0009753],extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; serine-type endopeptidase activity [GO:0004252],extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252]; response to cadmium ion [GO:0046686],peptidase activity [GO:0008233],serine-type endopeptidase activity [GO:0004252],integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Specifically expressed in root stele of the root hair zone. {ECO:0000269|PubMed:19832941}. locus:2154513;,locus:2154528;,locus:2153291;,locus:2154503;,locus:2168444;,locus:2168434;,locus:2061131;,locus:2168524;,locus:2102792;,locus:2153296;,locus:2102807;,locus:2153301; AT5G58830,AT5G58840,AT5G59090,AT5G58820,AT5G58810,AT5G59130,AT5G59120,AT2G39850,AT5G59190,AT3G46840,AT5G59100,AT3G46850,AT5G59110 subtilase family NA NA NA NA NA NA NA ENOG411DQNJ PGM F4IBB2,Q8GY96,F4IBB0,F4IBB3 PGML2_ARATH,PGM_ARATH,F4IBB0_ARATH,F4IBB3_ARATH Phosphoglycerate mutase-like protein 2,Phosphoglycerate mutase-like protein (AtPGM),Phosphoglycerate mutase family protein FUNCTION: May play a role in carbohydrates metabolism. {ECO:0000250|UniProtKB:Q9MAA2}. 38605,29890,33755,33869 Phosphoglycerate mutase-like protein 2,Phosphoglycerate mutase-like protein (AtPGM),Phosphoglycerate mutase family protein chloroplast [GO:0009507],cytosol [GO:0005829] TISSUE SPECIFICITY: Expressed in the shoot apical meristem and meristematic zone of the root tips. {ECO:0000269|PubMed:15010616}. locus:2016640;,locus:2827577; AT1G58280,AT2G17280 phosphoglycerate NA NA NA NA NA NA NA ENOG411DQNH DTX49 O82752 DTX49_ARATH Protein DETOXIFICATION 49 (AtDTX49) (Multidrug and toxic compound extrusion protein 49) (MATE protein 49) (Protein NOVEL ION CARRIER 1) (Protein NIC1) R-ATH-425366; 55233 Protein DETOXIFICATION 49 (AtDTX49) (Multidrug and toxic compound extrusion protein 49) (MATE protein 49) (Protein NOVEL ION CARRIER 1) (Protein NIC1) integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] locus:2127193; AT4G23030 Multidrug and toxin extrusion protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q6EP85,Q7XU48 Q6EP85_ORYSJ,Q7XU48_ORYSJ Os02g0676400 Os02g0676400 OsJ_15781 OSNPB_020676400 P0135D07.26,Os04g0571600 OSJNBa0088I22.5 OSNPB_040571600 ENOG411DQNN LCKB2 O82359 LCKB2_ARATH Sphingoid long-chain bases kinase 2, mitochondrial (AtLCBK2) (LCB kinase 2) (EC 2.7.-.-) FUNCTION: Involved in the production of sphingoid long-chain base (LCB). Is required for the cold-induced accumulation of phytosphingosine-phosphate, the regulation of the cold-responsive MPK6 and reduction of root growth at moderate low temperature. {ECO:0000269|PubMed:22236066}. 2.7.-.- 39655 Sphingoid long-chain bases kinase 2, mitochondrial (AtLCBK2) (LCB kinase 2) (EC 2.7.-.-) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; D-erythro-sphingosine kinase activity [GO:0017050]; NAD+ kinase activity [GO:0003951]; phytosphingosine metabolic process [GO:0006671]; response to cold [GO:0009409] locus:2063004; AT2G46090 diacylglycerol Expressed protein (Os03g0125400 protein) (cDNA clone:J033034J23, full insert sequence) Q10SE4 Q10SE4_ORYSJ Os03g0125400 LOC_Os03g03400 Os03g0125400 OsJ_09241 OSNPB_030125400 ENOG411EHVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVW Q9SFE0,F4HZR4 Q9SFE0_ARATH,F4HZR4_ARATH T26F17.18 (Transmembrane protein),Transmembrane protein 14986,20830 T26F17.18 (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2201153;,locus:2201118; AT1G21950,AT1G21940 NA NA NA NA NA NA NA NA ENOG411EHVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Double-stranded RNA binding motif NA NA NA NA NA NA NA ENOG411EHVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0415300 protein C7J6G8 C7J6G8_ORYSJ Os09g0415300 OSNPB_090415300 ENOG411EHVJ LCR24,LCR38,LCR37 Q8LFM0,P82753,P82752 DF163_ARATH,DF164_ARATH,DF162_ARATH Defensin-like protein 163 (Low-molecular-weight cysteine-rich protein 24) (Protein LCR24),Defensin-like protein 164 (Low-molecular-weight cysteine-rich protein 38) (Protein LCR38),Putative defensin-like protein 162 (Putative low-molecular-weight cysteine-rich protein 37) (Protein LCR37) 8465,8562,8366 Defensin-like protein 163 (Low-molecular-weight cysteine-rich protein 24) (Protein LCR24),Defensin-like protein 164 (Low-molecular-weight cysteine-rich protein 38) (Protein LCR38),Putative defensin-like protein 162 (Putative low-molecular-weight cysteine-rich protein 37) (Protein LCR37) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:505006533;,locus:1009023388;,locus:1009023369; AT4G29285,AT4G19905,AT4G13095 Low-molecular-weight cysteine-rich NA NA NA NA NA NA NA ENOG411EHVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EHVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHVC Q8RUZ6,A0A1P8B2E9,A0A1I9LRT2 Q8RUZ6_ARATH,A0A1P8B2E9_ARATH,A0A1I9LRT2_ARATH Uncharacterized protein At2g07505 (Zinc ion binding protein),Zinc ion-binding protein 16164,15457,10238 Uncharacterized protein At2g07505 (Zinc ion binding protein),Zinc ion-binding protein zinc ion binding [GO:0008270] locus:2827409; AT2G07505 GRF zinc finger NA NA NA NA NA NA NA ENOG411EHVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: clavata3 esr-related NA NA NA NA NA NA NA ENOG411EHV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E059 Q9SKY5,A0A1P8B2T7,A0A1P8B2T3 Q9SKY5_ARATH,A0A1P8B2T7_ARATH,A0A1P8B2T3_ARATH At2g32150/F22D22.10 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) (Putative hydrolase),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 29036,21025,25513 At2g32150/F22D22.10 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) (Putative hydrolase),Haloacid dehalogenase-like hydrolase (HAD) superfamily protein hydrolase activity [GO:0016787] locus:2045422; AT2G32150 Inherit from KOG: Haloacid dehalogenase-like hydrolase family protein HAD-superfamily hydrolase, subfamily IA, variant 3, putative (Os03g0701200 protein) (Phosphatase, putative, expressed) (cDNA clone:006-310-D11, full insert sequence) (cDNA clone:J013034L20, full insert sequence) Q53RB5 Q53RB5_ORYSJ LOC_Os03g49440 Os03g0701200 OsJ_12245 OSNPB_030701200 ENOG411E9IM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q6YY41 Q6YY41_ORYSJ OSJNBb0046O12.33 Os02g0589400 OSNPB_020589400 ENOG411E9IN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FES NA NA NA NA NA NA NA ENOG411E9II NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411E9IH YUP8H12R.29 Q0WPK4 Q0WPK4_ARATH AT1G79090 protein (Topoisomerase II-associated protein) (Uncharacterized protein At1g79090) FUNCTION: Activator of mRNA decapping. Involved in mRNA decay via decapping. Involved in disease resistance in response to biotrophic and necrotrophic pathogens. Is part of a signaling pathway including MPK4 and the disease resistance protein SUMM2. {ECO:0000269|PubMed:25603932}. 88840 AT1G79090 protein (Topoisomerase II-associated protein) (Uncharacterized protein At1g79090) P-body [GO:0000932]; isomerase activity [GO:0016853]; mRNA binding [GO:0003729]; cytoplasmic mRNA processing body assembly [GO:0033962]; deadenylation-dependent decapping of nuclear-transcribed mRNA [GO:0000290]; innate immune response [GO:0045087] locus:2207400; AT1G79090 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E9IK ABCG17,ABCG18 Q9M2V6,Q9M2V5 AB17G_ARATH,AB18G_ARATH ABC transporter G family member 17 (ABC transporter ABCG.17) (AtABCG17) (Probable white-brown complex homolog protein 17) (AtWBC17),ABC transporter G family member 18 (ABC transporter ABCG.18) (AtABCG18) (Probable white-brown complex homolog protein 18) (AtWBC18) R-ATH-1369062; 74383,78700 ABC transporter G family member 17 (ABC transporter ABCG.17) (AtABCG17) (Probable white-brown complex homolog protein 17) (AtWBC17),ABC transporter G family member 18 (ABC transporter ABCG.18) (AtABCG18) (Probable white-brown complex homolog protein 18) (AtWBC18) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2097208;,locus:2097218; AT3G55100,AT3G55110 Abc transporter family protein NA NA NA NA NA NA NA ENOG411E9IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipopolysaccharide kinase (Kdo/WaaP) family NA NA NA NA NA NA NA ENOG411E9IE BIG4 F4JN05,A0A1P8B4J7 BIG4_ARATH,A0A1P8B4J7_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 4 (BIG4) (ARF guanine-nucleotide exchange factor BIG4),SEC7-like guanine nucleotide exchange family protein FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting (By similarity). {ECO:0000250}. 190826,142821 Brefeldin A-inhibited guanine nucleotide-exchange protein 4 (BIG4) (ARF guanine-nucleotide exchange factor BIG4),SEC7-like guanine nucleotide exchange family protein cytosol [GO:0005829]; trans-Golgi network membrane [GO:0032588]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012],ARF guanyl-nucleotide exchange factor activity [GO:0005086]; regulation of ARF protein signal transduction [GO:0032012] locus:2122143; AT4G35380 Domain of unknown function (DUF1981) NA NA NA NA NA NA NA ENOG411E9ID Q9FI65 Q9FI65_ARATH Universal stress A-like protein 16435 Universal stress A-like protein response to stress [GO:0006950] locus:2154369; AT5G49050 Universal stress protein family NA NA NA NA NA NA NA ENOG411E9IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9IA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os06g0163900 protein A0A0N7KLL0 A0A0N7KLL0_ORYSJ Os06g0163900 OSNPB_060163900 ENOG411E9IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated NA NA NA NA NA NA NA ENOG411E9IB IAA5 P33078 IAA5_ARATH Auxin-responsive protein IAA5 (Auxin-induced protein AUX2-27) (Indoleacetic acid-induced protein 5) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 18354 Auxin-responsive protein IAA5 (Auxin-induced protein AUX2-27) (Indoleacetic acid-induced protein 5) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in stems and flowers. {ECO:0000269|PubMed:7658471}. locus:2196573; AT1G15580 AUX/IAA family NA NA NA NA NA NA NA ENOG411E9IY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: 4-hydroxyphenylpyruvate dioxygenase NA NA NA NA NA NA NA ENOG411E9IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411E9IZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411E9IU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G_alpha NA NA NA NA NA NA NA ENOG411E9IW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E9IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MBOAT membrane-bound O-acyltransferase family Os02g0468100 protein,Os02g0454700 protein (Fragment) A0A0P0VIT5,A0A0P0VIL7 A0A0P0VIT5_ORYSJ,A0A0P0VIL7_ORYSJ Os02g0468100 OSNPB_020468100,Os02g0454700 OSNPB_020454700 ENOG411E9IQ ABI1,ABI2 P49597,O04719,A0A1P8BEK2 P2C56_ARATH,P2C77_ARATH,A0A1P8BEK2_ARATH Protein phosphatase 2C 56 (AtPP2C56) (EC 3.1.3.16) (Protein ABSCISIC ACID-INSENSITIVE 1) (Protein phosphatase 2C ABI1) (PP2C ABI1),Protein phosphatase 2C 77 (AtPP2C77) (EC 3.1.3.16) (Protein ABSCISIC ACID-INSENSITIVE 2) (Protein phosphatase 2C ABI2) (PP2C ABI2),Protein phosphatase 2C family protein DISRUPTION PHENOTYPE: In abi1td, enhanced induction of MKKK18 activity after 90 minutes of abscisic acid (ABA) treatment and reduced degradation of MKKK18 by the proteasome. {ECO:0000269|PubMed:26443375}. Mutant plants had increased ABA content in response to both low water potential and exogenous ABA. Also accumulation of proline was reduced 4-5 fold in mutant plants compared to WT in response to low water potential and exogenously applied ABA.,Mutant showed a similar sensitivity to 25 mM trehalose as wild type (inhibition of root growth).,Double mutants were indistinguishable from bps1 single mutants.,mutant showed ABA-hypersensitive regulation of seed germination and root growth; increased sensitivity to salt and osmotic stress during germination; increased sensitivity to glucose during germination; reduced leaf transpiration rate; increased ABA-induced stomatal closure; stomatal responses to 0.5 mM H2O2 and Ca2+ as WT; WT sensitivity to GA NAA and ACC; mutant plants had decreased ABA content in response to drought and ozone; increased ACC production in response to ozone. Sensitive to ABA-J. Sadowski-2009 FUNCTION: Key component and repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, osmotic water permeability of the plasma membrane (Pos), drought-induced resistance and rhizogenesis, response to glucose, high light stress, seed germination and inhibition of vegetative growth. During the stomatal closure regulation, modulates the inward calcium-channel permeability as well as the actin reorganization in guard cells in response to ABA. Involved in the resistance to the bacterial pathogen Pseudomonas syringae pv. tomato. Controls negatively fibrillin expression that is involved in mediating ABA-induced photoprotection. May be involved in ABA content regulation. Plays a role in the Pro accumulation in response to reduced water availability (low water potential). Required for the ABA negative regulation of the ethylene-induced hyponastic growth. Involved in acquired thermotolerance of root growth and seedling survival. Activates/represses SRK2E/OST1 in response to ABA-dependent stimuli, especially in stomata closure regulation involving SLAC1. Represses MAPKKK18 activity and promotes MAPKKK18 degradation by the proteasome pathway upon abscisic acid (ABA) treatment (PubMed:26443375). {ECO:0000269|PubMed:10488243, ECO:0000269|PubMed:10521520, ECO:0000269|PubMed:10645425, ECO:0000269|PubMed:10872217, ECO:0000269|PubMed:10950871, ECO:0000269|PubMed:11208021, ECO:0000269|PubMed:11289613, ECO:0000269|PubMed:11587514, ECO:0000269|PubMed:11701885, ECO:0000269|PubMed:11707572, ECO:0000269|PubMed:12047634, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:12194854, ECO:0000269|PubMed:12228349, ECO:0000269|PubMed:12232124, ECO:0000269|PubMed:12232276, ECO:0000269|PubMed:12432076, ECO:0000269|PubMed:12609042, ECO:0000269|PubMed:12713537, ECO:0000269|PubMed:14576281, ECO:0000269|PubMed:14596925, ECO:0000269|PubMed:15144382, ECO:0000269|PubMed:15197253, ECO:0000269|PubMed:15618419, ECO:0000269|PubMed:15923322, ECO:0000269|PubMed:16339784, ECO:0000269|PubMed:16365038, ECO:0000269|PubMed:16571665, ECO:0000269|PubMed:16614222, ECO:0000269|PubMed:16652949, ECO:0000269|PubMed:16798945, ECO:0000269|PubMed:17158582, ECO:0000269|PubMed:17304219, ECO:0000269|PubMed:18298671, ECO:0000269|PubMed:1834244, ECO:0000269|PubMed:19955405, ECO:0000269|PubMed:26443375, ECO:0000269|PubMed:7568166, ECO:0000269|PubMed:8492808, ECO:0000269|PubMed:8771791, ECO:0000269|PubMed:8898906, ECO:0000269|PubMed:9090884, ECO:0000269|PubMed:9108297, ECO:0000269|PubMed:9161030, ECO:0000269|PubMed:9165752, ECO:0000269|PubMed:9263461, ECO:0000269|PubMed:9276963, ECO:0000269|PubMed:9351242, ECO:0000269|PubMed:9448270, ECO:0000269|Ref.8}.,FUNCTION: Repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, osmotic water permeability of the plasma membrane (Pos), high light stress, response to glucose, seed germination and inhibition of vegetative growth. During the stomatal closure regulation, modulates the inward calcium-channel permeability as well as H(2)O(2) and oxidative burst in response to ABA and dehydration. Controls negatively fibrillin that is involved in mediating ABA-induced photoprotection. May be implicated in ABA content regulation. Involved in acquired thermotolerance of root growth and seedling survival. Required for the Erwinia amylovora harpin-induced (HrpN) drought tolerance. Involved in the hydrotropic response. {ECO:0000269|PubMed:10488243, ECO:0000269|PubMed:10872217, ECO:0000269|PubMed:10950871, ECO:0000269|PubMed:11208021, ECO:0000269|PubMed:11701885, ECO:0000269|PubMed:11707572, ECO:0000269|PubMed:12119381, ECO:0000269|PubMed:12194854, ECO:0000269|PubMed:12232276, ECO:0000269|PubMed:12447533, ECO:0000269|PubMed:12609042, ECO:0000269|PubMed:14576281, ECO:0000269|PubMed:14596925, ECO:0000269|PubMed:15599761, ECO:0000269|PubMed:15923322, ECO:0000269|PubMed:16339784, ECO:0000269|PubMed:16571665, ECO:0000269|PubMed:18278579, ECO:0000269|PubMed:8787023, ECO:0000269|PubMed:9090884, ECO:0000269|PubMed:9108297, ECO:0000269|PubMed:9165752, ECO:0000269|PubMed:9276963}. MISCELLANEOUS: Enhanced ABA signaling repressor activity by the proteasomal inhibitor MG132 accompanied by a cytoplasmic localization.; MISCELLANEOUS: Plants insensitive to ABA (abi1-1) are more resistant to P.syringae.,MISCELLANEOUS: The reduced form of ABI2 is converted to the oxidized form by the addition of oxidized GPX3 or H(2)O(2). 3.1.3.16; 3.1.3.16 47506,46306,34038 Protein phosphatase 2C 56 (AtPP2C56) (EC 3.1.3.16) (Protein ABSCISIC ACID-INSENSITIVE 1) (Protein phosphatase 2C ABI1) (PP2C ABI1),Protein phosphatase 2C 77 (AtPP2C77) (EC 3.1.3.16) (Protein ABSCISIC ACID-INSENSITIVE 2) (Protein phosphatase 2C ABI2) (PP2C ABI2),Protein phosphatase 2C family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein kinase binding [GO:0019901]; protein serine/threonine phosphatase activity [GO:0004722]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein dephosphorylation [GO:0006470]; regulation of abscisic acid-activated signaling pathway [GO:0009787]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to heat [GO:0009408],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of protein kinase activity [GO:0006469]; photoinhibition [GO:0010205]; regulation of stomatal opening [GO:1902456]; response to abscisic acid [GO:0009737]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] TISSUE SPECIFICITY: Expressed in seeds and seedlings. In roots, confined to lateral root caps and columella cells. {ECO:0000269|PubMed:16339800, ECO:0000269|PubMed:18298671}. locus:2005488;,locus:2164610; AT4G26080,AT5G57050 PP2Cc NA NA NA NA NA NA NA ENOG411E9IP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9IS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 NA NA NA NA NA NA NA ENOG411E9IR LYM3,LYM1 Q6NPN4,Q93ZH0 LYM3_ARATH,LYM1_ARATH LysM domain-containing GPI-anchored protein 2,LysM domain-containing GPI-anchored protein 1 DISRUPTION PHENOTYPE: Impaired sensitivity to peptidoglycans (PGNs) leading to higher susceptibility to infection with virulent Pseudomonas syringae pv. tomato DC3000. {ECO:0000269|PubMed:22106285}. FUNCTION: Required as a cell surface receptor for peptidoglycan (PGN) elicitor signaling leading to innate immunity. Plays an essential role in detecting PGNs and restricting bacterial growth (of Pseudomonas syringae pv. tomato DC3000 for example). {ECO:0000269|PubMed:22106285}. 44152,43490 LysM domain-containing GPI-anchored protein 2,LysM domain-containing GPI-anchored protein 1 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; peptidoglycan binding [GO:0042834]; defense response [GO:0006952]; immune response [GO:0006955],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; peptidoglycan binding [GO:0042834]; defense response [GO:0006952]; immune response [GO:0006955] locus:2204720;,locus:2201143; AT1G77630,AT1G21880 lysM domain-containing NA NA NA NA NA NA NA ENOG411E9I9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH:flavin oxidoreductase / NADH oxidase family NA NA NA NA NA NA NA ENOG411E9I8 MUD12.7 Q0WQ93,F4IEZ7,F4I901,F4KFY5 Q0WQ93_ARATH,F4IEZ7_ARATH,F4I901_ARATH,F4KFY5_ARATH Disease resistance protein (TIR-NBS-LRR class) (Uncharacterized protein At1g72840),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) family 117673,134063,118575,115275 Disease resistance protein (TIR-NBS-LRR class) (Uncharacterized protein At1g72840),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) family ADP binding [GO:0043531]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; ADP binding [GO:0043531]; regulation of innate immune response [GO:0045088]; signal transduction [GO:0007165],chloroplast envelope [GO:0009941]; plasma membrane [GO:0005886]; ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2032707;,locus:2007863;,locus:2174920; AT1G72840,AT1G17600,AT5G40100 TIR NA NA NA NA NA NA NA ENOG411E9I5 LECRK52 O04533 LRK52_ARATH Putative L-type lectin-domain containing receptor kinase V.2 (Arabidopsis thaliana lectin-receptor kinase b1) (AthlecRK-b1) (LecRK-V.2) (EC 2.7.11.1) 2.7.11.1 72455 Putative L-type lectin-domain containing receptor kinase V.2 (Arabidopsis thaliana lectin-receptor kinase b1) (AthlecRK-b1) (LecRK-V.2) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674] locus:2020593; AT1G70130 Legume lectin domain NA NA NA NA NA NA NA ENOG411E9I4 T1G12.4 Q9SG15,Q9ZQH7 Q9SG15_ARATH,Q9ZQH7_ARATH Cysteine protease-like protein (Cysteine proteinases superfamily protein) (Putative cysteine proteinase; 15366-14136),Cysteine proteinase (Cysteine proteinases superfamily protein) (Putative cysteine proteinase) 37688,38738 Cysteine protease-like protein (Cysteine proteinases superfamily protein) (Putative cysteine proteinase; 15366-14136),Cysteine proteinase (Cysteine proteinases superfamily protein) (Putative cysteine proteinase) extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2082881;,locus:2038588; AT3G49340,AT2G27420 Inhibitor_I29 NA NA NA NA NA NA NA ENOG411E9I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E9I6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9I1 CIPK19 Q9FJ55 CIPKJ_ARATH CBL-interacting serine/threonine-protein kinase 19 (EC 2.7.11.1) (SNF1-related kinase 3.5) (SOS2-like protein kinase PKS21) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 54616 CBL-interacting serine/threonine-protein kinase 19 (EC 2.7.11.1) (SNF1-related kinase 3.5) (SOS2-like protein kinase PKS21) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] locus:2152370; AT5G45810 NAF domain NA NA NA NA NA NA NA ENOG411E9I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E9I2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED18 T19K24.12 O48583,Q6DR61,Q9FN23,Q9FN24,F4JYT0,A0A1P8BFV2,F4JYT3,F4JIJ2,F4JA67,F4KBH8,B3H668 O48583_ARATH,Q6DR61_ARATH,Q9FN23_ARATH,Q9FN24_ARATH,F4JYT0_ARATH,A0A1P8BFV2_ARATH,F4JYT3_ARATH,F4JIJ2_ARATH,F4JA67_ARATH,F4KBH8_ARATH,B3H668_ARATH CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein) (DC1 domain-containing protein) (T19K24.12 protein),Cysteine/Histidine-rich C1 domain family protein,CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein) 61725,57026,68838,48482,65559,68129,67068,62329,30083,56657,34188 CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein) (DC1 domain-containing protein) (T19K24.12 protein),Cysteine/Histidine-rich C1 domain family protein,CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein) zinc ion binding [GO:0008270],intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556],intracellular [GO:0005622]; intracellular signal transduction [GO:0035556] locus:2156334;,locus:2058409;,locus:2154689;,locus:2154764;,locus:2154759;,locus:2154699;,locus:2129555;,locus:2087352;,locus:1005716148; AT5G44770,AT2G04500,AT5G54040,AT5G54030,AT5G54020,AT5G54050,AT4G14980,AT3G25850,AT5G29624,AT1G58037 cysteine histidine-rich C1 NA NA NA NA NA NA NA ENOG411ED19 Q8VY60 Q8VY60_ARATH LOW protein: ATP-dependent RNA helicase-like protein (Uncharacterized protein At1g15260) 20272 LOW protein: ATP-dependent RNA helicase-like protein (Uncharacterized protein At1g15260) helicase activity [GO:0004386] locus:2037763; AT1G15260 NA NA NA NA NA NA NA NA ENOG411ED14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAD dependent epimerase/dehydratase family NA NA NA NA NA NA NA ENOG411ED16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411ED10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein Chlorophyll a-b binding protein 1, chloroplastic (LHCII type I CAB-1) (LHCP),Chlorophyll a-b binding protein 2, chloroplastic (LHCII type I CAB-2) (LHCP),Chlorophyll a-b binding protein, chloroplastic P12330,P12331,Q8W0E6 CB21_ORYSJ,CB22_ORYSJ,Q8W0E6_ORYSJ CAB1R Os09g0346500 LOC_Os09g17740 OSJNBb0085I16.35 P0512H04.4,CAB2R Os01g0600900 LOC_Os01g41710 OsJ_28992 P0518F01.17-1,Os01g0720500 Os01g0720500 OsJ_03282 OSNPB_010720500 P0690B02.7 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411ED11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED12 A0A1P8BFM9,F4K2H9 A0A1P8BFM9_ARATH,F4K2H9_ARATH RING finger protein 37997,43741 RING finger protein locus:2183866; AT5G13250 NA NA NA NA NA NA NA NA ENOG411ED1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411ED1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411ED1K AGL79 Q7X9H6 Q7X9H6_ARATH AGAMOUS-like 79 (MADS-box protein AGL79) 28075 AGAMOUS-like 79 (MADS-box protein AGL79) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2102871; AT3G30260 K-box region NA NA NA NA NA NA NA ENOG411ED1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os01g0273200 protein,Os01g0607050 protein A0A0P0V128,A0A0P0V514 A0A0P0V128_ORYSJ,A0A0P0V514_ORYSJ Os01g0273200 OSNPB_010273200,Os01g0607050 OSNPB_010607050 ENOG411ED1F B3LF52,A0A1P8B3H6,A0A1P8B3G3,F4JGB3 B3LF52_ARATH,A0A1P8B3H6_ARATH,A0A1P8B3G3_ARATH,F4JGB3_ARATH At4g03820 (Transmembrane protein, putative (DUF3537)),Transmembrane protein, putative (DUF3537) 50251,56084,58032,52199 At4g03820 (Transmembrane protein, putative (DUF3537)),Transmembrane protein, putative (DUF3537) integral component of membrane [GO:0016021] locus:2141481; AT4G03820 Protein of unknown function (DUF3537) NA NA NA NA NA NA NA ENOG411ED1A Q9LUJ6 FB176_ARATH Putative F-box protein At3g22650 increased lateral root formation 44605 Putative F-box protein At3g22650 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] AT3G22650 F-box associated domain NA NA NA NA NA NA NA ENOG411ED1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411ED1C B6IDH2,Q8H0S2,F4JNZ5 B6IDH2_ARATH,Q8H0S2_ARATH,F4JNZ5_ARATH At4g11350 (Glycosyltransferase) (Transferring glycosyl group transferase (DUF604)),At4g23490/F16G20_190 (Fringe-like protein (DUF604)) (Glycosyltransferase),Transferring glycosyl group transferase (DUF604) 58208,60531,36099 At4g11350 (Glycosyltransferase) (Transferring glycosyl group transferase (DUF604)),At4g23490/F16G20_190 (Fringe-like protein (DUF604)) (Glycosyltransferase),Transferring glycosyl group transferase (DUF604) integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2128283;,locus:2117949; AT4G11350,AT4G23490 Protein of unknown function DUF604 NA NA NA NA NA NA NA ENOG411ED1Y Q1PF04,A0A1P8B0J4 Q1PF04_ARATH,A0A1P8B0J4_ARATH Alpha/beta-Hydrolases superfamily protein 32853,33557 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2061032; AT2G24320 Inherit from KOG: Family with sequence similarity 108 member NA NA NA NA NA NA NA ENOG411ED1Z HDG7 Q9LTK3,A0A1P8BG00 HDG7_ARATH,A0A1P8BG00_ARATH Homeobox-leucine zipper protein HDG7 (HD-ZIP protein HDG7) (Homeodomain GLABRA 2-like protein 7) (Homeodomain transcription factor HDG7) (Protein HOMEODOMAIN GLABROUS 7),Homeodomain GLABROUS 7 FUNCTION: Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}. 75638,76232 Homeobox-leucine zipper protein HDG7 (HD-ZIP protein HDG7) (Homeodomain GLABRA 2-like protein 7) (Homeodomain transcription factor HDG7) (Protein HOMEODOMAIN GLABROUS 7),Homeodomain GLABROUS 7 nucleus [GO:0005634]; lipid binding [GO:0008289]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; lipid binding [GO:0008289] TISSUE SPECIFICITY: Expressed in cells around the base of leaf primordia, in the outermost 2 to 3 cell layers along the boundary between two leaf primordia. Expressed in lateral root primordia and tips, and in the epidermal boundaries of two cotyledons at heart-stage embryo. {ECO:0000269|PubMed:16778018}. locus:2145116; AT5G52170 START NA NA NA NA NA NA NA ENOG411ED1T Q9C9M0 SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 4) (Seven in absentia-like protein 4) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5689880;R-ATH-983168; 2.3.2.27 36938 E3 ubiquitin-protein ligase SINA-like 4 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 4) (Seven in absentia-like protein 4) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2033369; AT1G66650 Seven in absentia protein family NA NA NA NA NA NA NA ENOG411ED1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles which further mediate biosynthetic protein transport from the ER via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) NA NA NA NA NA NA NA ENOG411ED1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Allene oxide synthase NA NA NA NA NA NA NA ENOG411ED1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED1S PRA1F1 Q9FZ63 PR1F1_ARATH PRA1 family protein F1 (AtPRA1.F1) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 20445 PRA1 family protein F1 (AtPRA1.F1) endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in hypocotyls, leaf bases and shoot apex. {ECO:0000269|PubMed:18583532}. locus:2007948; AT1G17700 prenylated rab acceptor NA NA NA NA NA NA NA ENOG411EIWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0910800 protein Q8S0B2 Q8S0B2_ORYSJ Os01g0910800 OsJ_04497 OSNPB_010910800 P0456E05.38 P0470A12.6 ENOG411EIWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA containing Pfam profile PF03004 Transposase_24 Os01g0215800 protein,Os05g0286600 protein,Os04g0318300 protein A0A0N7KCJ9,A0A0P0WKD7,A0A0P0W8I6 A0A0N7KCJ9_ORYSJ,A0A0P0WKD7_ORYSJ,A0A0P0W8I6_ORYSJ Os01g0215800 OSNPB_010215800,Os05g0286600 OSNPB_050286600,Os04g0318300 OSNPB_040318300 ENOG411EFP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411EFP3 A_TM018A10.6 O23089 O23089_ARATH AT4g00880 protein (A_TM018A10.6 protein) (SAUR-like auxin-responsive protein family) (Uncharacterized protein At4g00880) 14386 AT4g00880 protein (A_TM018A10.6 protein) (SAUR-like auxin-responsive protein family) (Uncharacterized protein At4g00880) response to auxin [GO:0009733] locus:2134598; AT4G00880 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os10g0554800 protein A0A0P0XXN0 A0A0P0XXN0_ORYSJ Os10g0554800 OSNPB_100554800 ENOG411EFP4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Senescence-associated protein NA NA NA NA NA NA NA ENOG411EFP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EFP6 SAUR11 Q9FH62 Q9FH62_ARATH Auxin-induced protein-like (SAUR-like auxin-responsive protein family) 11094 Auxin-induced protein-like (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2155016; AT5G66260 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0242200 protein,Os02g0608000 protein A0A0P0Y8I1,A0A0P0VLK8 A0A0P0Y8I1_ORYSJ,A0A0P0VLK8_ORYSJ Os12g0242200 OSNPB_120242200,Os02g0608000 OSNPB_020608000 ENOG411EFPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain NA NA NA NA NA NA NA ENOG411EFPP MUB5 Q9SH14 MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 (AtMUB5) (Membrane-anchored ub-fold protein 5) FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. MISCELLANEOUS: Heat stable and remains soluble at temperatures exceeding 90 degrees Celsius. 13487 Membrane-anchored ubiquitin-fold protein 5 (AtMUB5) (Membrane-anchored ub-fold protein 5) plasma membrane [GO:0005886] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16831869}. locus:2029466; AT1G77870 Inherit from euNOG: membrane-anchored ubiquitin-fold protein NA NA NA NA NA NA NA ENOG411EFPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thymidine kinase NA NA NA NA NA NA NA ENOG411EFPR C7A10.860 O23231,Q9ZPV4,Q9ZPV3 O23231_ARATH,Q9ZPV4_ARATH,Q9ZPV3_ARATH Uncharacterized protein At4g36500 (Uncharacterized protein C7A10.860),At2g18210 (Uncharacterized protein At2g18210),Transmembrane protein (Uncharacterized protein At2g18200) 13875,14432,11706 Uncharacterized protein At4g36500 (Uncharacterized protein C7A10.860),At2g18210 (Uncharacterized protein At2g18210),Transmembrane protein (Uncharacterized protein At2g18200) integral component of membrane [GO:0016021] locus:2115380;,locus:2062101;,locus:2062111; AT4G36500,AT2G18210,AT2G18200 NA NA NA NA NA NA NA NA ENOG411EFPU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 12-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (By similarity) NA NA NA NA NA NA NA ENOG411EFPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EFPY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein NA NA NA NA NA NA NA ENOG411EFPX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ubox domain-containing protein NA NA NA NA NA NA NA ENOG411EFPZ F26G5_120 Q9LXP6 Q9LXP6_ARATH Plant self-incompatibility protein S1 family protein (Uncharacterized protein F26G5_120) 17990 Plant self-incompatibility protein S1 family protein (Uncharacterized protein F26G5_120) locus:2081433; AT3G44170 NA NA NA NA NA NA NA NA ENOG411EFPA VQ29 Q9SZG3 VQ29_ARATH VQ motif-containing protein 29 (AtVQ29) FUNCTION: May function as negative regulator of flowering transition. {ECO:0000305|PubMed:22535423}. MISCELLANEOUS: Plants over-expressing VQ29 have delayed flowering. {ECO:0000269|PubMed:22535423}. 13809 VQ motif-containing protein 29 (AtVQ29) nucleus [GO:0005634]; cellular response to hypoxia [GO:0071456]; flower development [GO:0009908] locus:2120076; AT4G37710 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411EFPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L18e/L15 NA NA NA NA NA NA NA ENOG411EFPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411EFPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EFPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFPG CID2 Q94AR4 CID2_ARATH Polyadenylate-binding protein-interacting protein 2 (PABP-interacting protein 2) (Poly(A)-binding protein-interacting protein 2) (PAM2-containing protein CID2) (Protein CTC-INTERACTING DOMAIN 2) 16657 Polyadenylate-binding protein-interacting protein 2 (PABP-interacting protein 2) (Poly(A)-binding protein-interacting protein 2) (PAM2-containing protein CID2) (Protein CTC-INTERACTING DOMAIN 2) locus:2129570; AT4G14270 NA NA NA NA NA NA NA NA ENOG411EFPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain NA NA NA NA NA NA NA ENOG411EFPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EFPH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retroviral aspartyl protease NA NA NA NA NA NA NA ENOG411EFPJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EFPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os03g0178900 protein A0A0P0VTT9 A0A0P0VTT9_ORYSJ Os03g0178900 OSNPB_030178900 ENOG411E46Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dehydrin Dehydrin DHN1 (Dehydration stress-inducible protein 1) (Dehydrin 1) (OsDhn1) (Low tmperature-induced protein 9) (OsLIP9) Q6ESR4 DHN1_ORYSJ DHN1 DIP1 LIP9 Os02g0669100 LOC_Os02g44870 OJ1725_H08.23-1 P0684A08.9-1 ENOG411E46Z MUL3.1 F4KAI4 F4KAI4_ARATH Hydroxyproline-rich glycoprotein family protein 63850 Hydroxyproline-rich glycoprotein family protein integral component of membrane [GO:0016021] locus:2175539; AT5G57070 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411E46R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF828 Os02g0689600 protein A0A0N7KFW7 A0A0N7KFW7_ORYSJ Os02g0689600 OSNPB_020689600 ENOG411E46T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR3 (OsRR3) (OsRRA7) Q6K9T0 ORR3_ORYSJ RR3 Os02g0830200 LOC_Os02g58350 OJ1124_D06.19 OsJ_08987 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering, abnormal hull, viviparous and low fertility phenotype. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411E46W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411E46B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Taurine catabolism dioxygenase TauD TfdA family NA NA NA NA NA NA NA ENOG411E469 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0645500 protein Q67W67 Q67W67_ORYSJ Os06g0645500 OJ1226_A12.1 OSNPB_060645500 P0017B12.27 ENOG411E462 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411E465 AP22.12 Q8LFK6,Q6NLX7 Q8LFK6_ARATH,Q6NLX7_ARATH Sugar transporter, putative (DUF1195) (Uncharacterized protein At5g65650),At4g36660 (Polyol transporter, putative (DUF1195)) 20939,19992 Sugar transporter, putative (DUF1195) (Uncharacterized protein At5g65650),At4g36660 (Polyol transporter, putative (DUF1195)) integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] locus:2155735;,locus:2115225; AT5G65650,AT4G36660 Protein of unknown function (DUF1195) Os03g0411600 protein A0A0P0VYN5 A0A0P0VYN5_ORYSJ Os03g0411600 OSNPB_030411600 ENOG411E464 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EKCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EKCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0834100 protein (Putative P70 protein) Q5QLB6 Q5QLB6_ORYSJ Os01g0834100 Os01g0834100 OSNPB_010834100 P0460C04.29 ENOG411EKCJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L11 methyltransferase (PrmA) NA NA NA NA NA NA NA ENOG411EKCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EKCC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EKCU MED19B Q6NQD9 MD19B_ARATH Probable mediator of RNA polymerase II transcription subunit 19b FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. 23824 Probable mediator of RNA polymerase II transcription subunit 19b mediator complex [GO:0016592]; transcription factor binding [GO:0008134]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2150275; AT5G19480 NA NA NA NA NA NA NA NA ENOG411EKCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411EKCQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0558100 protein (Fragment),Os12g0512200 protein (Fragment),Os10g0117400 protein,Os05g0377150 protein A0A0P0Y3I4,A0A0P0YAJ2,A0A0N7KRD0,A0A0N7KKN8 A0A0P0Y3I4_ORYSJ,A0A0P0YAJ2_ORYSJ,A0A0N7KRD0_ORYSJ,A0A0N7KKN8_ORYSJ Os11g0558100 OSNPB_110558100,Os12g0512200 OSNPB_120512200,Os10g0117400 OSNPB_100117400,Os05g0377150 OSNPB_050377150 ENOG411EKCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EKCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EKCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mycolic acid cyclopropane synthetase NA NA NA NA NA NA NA ENOG411EJ1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Cytochrome p450 NA NA NA NA NA NA NA ENOG411EKC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA late embryogenesis abundant domain-containing protein LEA domain-containing protein NA NA NA NA NA NA NA ENOG411EKC1 ELP1 Q9FI29,F4K064 Q9FI29_ARATH,F4K064_ARATH EDM2-like protein1 72376,77032 EDM2-like protein1 locus:2162667; AT5G48090 NA Os08g0502000 protein (Fragment) A0A0P0XHE6 A0A0P0XHE6_ORYSJ Os08g0502000 OSNPB_080502000 ENOG411EKC0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hemerythrin class glutathione S-transferase NA NA NA NA NA NA NA ENOG411EKC3 MOJ9.10 Q0WQA5 Q0WQA5_ARATH Nucleolar-like protein (Uncharacterized protein At5g06930) 80572 Nucleolar-like protein (Uncharacterized protein At5g06930) nuclear pore inner ring [GO:0044611]; structural constituent of nuclear pore [GO:0017056]; nuclear pore organization [GO:0006999] locus:2169349; AT5G06930 Inherit from NOG: Nucleolar protein NA NA NA NA NA NA NA ENOG411EKC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3CU RPS2 Q9GCB9 RT02_ARATH Ribosomal protein S2, mitochondrial 24773 Ribosomal protein S2, mitochondrial mitochondrial small ribosomal subunit [GO:0005763]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2096394; AT3G03600 ribosomal protein S2 Ribosomal protein S2 Q8HCP8 Q8HCP8_ORYSJ rps2 ENOG411E3CT AtMYB55,MYB55 Q9ZSI4,Q9M118,B3H664 Q9ZSI4_ARATH,Q9M118_ARATH,B3H664_ARATH Myb domain protein 55 (T15B16.4 protein),Myb domain protein 55 (Putative transcription factor) (Uncharacterized protein At4g01680) (Uncharacterized protein At4g01680; T15B16.4),Myb domain protein 55 39317,37886,27359 Myb domain protein 55 (T15B16.4 protein),Myb domain protein 55 (Putative transcription factor) (Uncharacterized protein At4g01680) (Uncharacterized protein At4g01680; T15B16.4),Myb domain protein 55 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of stomatal movement [GO:0010119]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355],DNA binding [GO:0003677] locus:2133382; AT4G01680 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E3CW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF716) NA NA NA NA NA NA NA ENOG411E3CY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Leucine-rich repeats and calponin homology (CH) domain containing NA NA NA NA NA NA NA ENOG411E3CD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E3CG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif containing protein Os09g0527500 protein (Putative RNA-binding protein),Os06g0127500 protein,Os08g0547000 protein (Putative RNA-binding protein) (cDNA clone:J013170L18, full insert sequence),Os09g0527100 protein Q652A3,B9FRA2,Q6Z9C4,Q0J072 Q652A3_ORYSJ,B9FRA2_ORYSJ,Q6Z9C4_ORYSJ,Q0J072_ORYSJ Os09g0527500 Os09g0527500 OJ1439_F07.25 OsJ_30081 OSNPB_090527500,Os06g0127500 OsJ_19964 OSNPB_060127500,Os08g0547000 Os08g0547000 OJ1323_A06.35 OSNPB_080547000 P0544G09.7,Os09g0527100 OSNPB_090527100 ENOG411E3CA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI Os01g0311700 protein (cDNA clone:J023132A06, full insert sequence),Os05g0360900 protein Q8LQA1,Q6L4M7 Q8LQA1_ORYSJ,Q6L4M7_ORYSJ Os01g0311700 B1011A07.11 OsJ_01483 OSNPB_010311700,Os05g0360900 OSNPB_050360900 P0530H10.7 ENOG411E3CC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family Os01g0303300 protein B9EVR3 B9EVR3_ORYSJ Os01g0303300 OsJ_01451 OSNPB_010303300 ENOG411E3C2 Q8L466,A0A1P8AWW8,F4I5D2 Q8L466_ARATH,A0A1P8AWW8_ARATH,F4I5D2_ARATH At1g24050/T23E23_11 (RNA-processing, Lsm domain-containing protein),RNA-processing, Lsm domain-containing protein 20491,20508,25189 At1g24050/T23E23_11 (RNA-processing, Lsm domain-containing protein),RNA-processing, Lsm domain-containing protein integral component of membrane [GO:0016021] locus:2199882;,locus:2020648; AT1G24050,AT1G70220 Anticodon-binding domain Os02g0741900 protein (cDNA clone:J013153P08, full insert sequence) Q6Z7R6 Q6Z7R6_ORYSJ Os02g0741900 OSNPB_020741900 P0516G10.33 P0585G03.11 ENOG411E179 BLH11 Q1PFD1,A0A1P8AMV1 BLH11_ARATH,A0A1P8AMV1_ARATH BEL1-like homeodomain protein 11 (BEL1-like protein 11),BEL1-like homeodomain 11 33024,32791 BEL1-like homeodomain protein 11 (BEL1-like protein 11),BEL1-like homeodomain 11 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2018457; AT1G75430 homeodomain protein NA NA NA NA NA NA NA ENOG411E178 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0550000 protein Q0E0I3 Q0E0I3_ORYSJ Os02g0550000 Os02g0550000 OSNPB_020550000 ENOG411E177 Q93ZB0,A0A1P8ATZ8 Q93ZB0_ARATH,A0A1P8ATZ8_ARATH At1g10380/F14N23_32 (Putative membrane lipoprotein) (Uncharacterized protein At1g10380),Putative membrane lipoprotein 33950,33375 At1g10380/F14N23_32 (Putative membrane lipoprotein) (Uncharacterized protein At1g10380),Putative membrane lipoprotein polysaccharide binding [GO:0030247] locus:2012863; AT1G10380 NA NA NA NA NA NA NA NA ENOG411E176 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os01g0875800 protein (cDNA clone:001-205-C09, full insert sequence) Q0JH98 Q0JH98_ORYSJ Os01g0875800 Os01g0875800 OSNPB_010875800 ENOG411E175 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 20 Os08g0414700 protein (Putative trehalose-6-phosphate synthase),Os09g0376800 protein (Fragment),Trehalose 6-phosphate phosphatase (EC 3.1.3.12),Os05g0153500 protein Q6Z548,Q0J256,A0A0P0WHK2,A0A0P0YAF6,A0A0P0WI49 Q6Z548_ORYSJ,Q0J256_ORYSJ,A0A0P0WHK2_ORYSJ,A0A0P0YAF6_ORYSJ,A0A0P0WI49_ORYSJ Os08g0414700 OSJNBa0007M04.45 OSNPB_080414700,Os09g0376800 Os09g0376800 OSNPB_090376800,Os05g0128900 OSNPB_050128900,Os12g0505800 OSNPB_120505800,Os05g0153500 OSNPB_050153500 FUNCTION: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. {ECO:0000256|RuleBase:RU361117}. ENOG411E174 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0151100 protein (Fragment) A0A0N7KK60 A0A0N7KK60_ORYSJ Os05g0151100 OSNPB_050151100 ENOG411E173 ALD1 Q9ZQI7 ALD1_ARATH Aminotransferase ALD1, chloroplastic (EC 2.6.1.-) (AGD2-like defense response protein 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but during infection with virulent strain of P.syringae, mutant plants have reduced levels of SA and camalexin, and show increased susceptibility to pathogen. Leaves show decreased ethylene-induced senescence. {ECO:0000269|PubMed:14729919, ECO:0000269|PubMed:15447647, ECO:0000269|PubMed:21530897}. FUNCTION: Aminotransferase involved in local and systemic acquired resistance (SAR) to the bacterial pathogen P.syringae. Required for salicylic acid (SA) and camalexin accumulation upon pathogen infection. Possesses aminotransferase activity in vitro and may generate amino-acid-derived defense signals in vivo. May be involved in ethylene-induced senescence signaling. Involved in the biosynthesis of pipecolate (Pip), a metabolite that orchestrates defense amplification, positive regulation of SA biosynthesis, and priming to guarantee effective local resistance induction and the establishment of SAR (PubMed:23221596, PubMed:27758894). Converts lysine to alpha-keto-epsilon-aminocaproate, which then can spontaneously cyclize to form delta-(1)-piperideine-2-carboxylate (P2C). P2C is converted to Pip by SARD4 (PubMed:27758894). May produce non-Pip metabolites that play roles in immunity. Involved in the synthesis of distinct metabolite signals that affect basal and early defenses, and later defense responses (PubMed:25372120). {ECO:0000269|PubMed:14729919, ECO:0000269|PubMed:15447647, ECO:0000269|PubMed:18266921, ECO:0000269|PubMed:19825557, ECO:0000269|PubMed:21530897, ECO:0000269|PubMed:23221596, ECO:0000269|PubMed:25372120, ECO:0000269|PubMed:27758894}. MISCELLANEOUS: Treatment with exogenous pipecolate (Pip) enhances disease resistance to Pseudomonas syringae pv. maculicola (PubMed:23221596). Plants over-expressing ALD1 exhibit resistance to Pseudomonas syringae pv. maculicola (PubMed:25372120). {ECO:0000269|PubMed:23221596, ECO:0000269|PubMed:25372120}. ARA:AT2G13810-MONOMER; 2.6.1.83; Biosynthesis of secondary metabolites (01110),Biosynthesis of amino acids (01230),Lysine biosynthesis (00300),Metabolic pathways (01100) 2.6.1.- 50577 Aminotransferase ALD1, chloroplastic (EC 2.6.1.-) (AGD2-like defense response protein 1) chloroplast [GO:0009507]; L,L-diaminopimelate aminotransferase activity [GO:0010285]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; defense response to bacterium [GO:0042742]; leaf senescence [GO:0010150]; lysine biosynthetic process via diaminopimelate [GO:0009089]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862] TISSUE SPECIFICITY: Highly expressed in senescing leaves, flowers, siliques and seeds. {ECO:0000269|PubMed:14729919, ECO:0000269|PubMed:21530897}. locus:2040481; AT2G13810 aminotransferase NA NA NA NA NA NA NA ENOG411E172 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA polyketide synthase NA NA NA NA NA NA NA ENOG411E171 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding Heat stress transcription factor B-2a (Heat stress transcription factor 1) (rHsf1) (Heat stress transcription factor 14) (OsHsf-14) Q7XRX3 HFB2A_ORYSJ HSFB2A HSF1 HSF14 Os04g0568700 LOC_Os04g48030 OSJNBb0032E06.3 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411E170 Q9SS68 Q9SS68_ARATH C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Putative phosphoribosylanthranilate transferase) 114266 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Putative phosphoribosylanthranilate transferase) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2096409; AT3G03680 Plant phosphoribosyltransferase C-terminal Os03g0652000 protein (Fragment) Q0DPY0 Q0DPY0_ORYSJ Os03g0652000 OSNPB_030652000 ENOG411E17N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein expressed F-box domain containing protein, expressed (Os10g0126600 protein) (cDNA clone:J033114K11, full insert sequence),Os10g0127900 protein (Fragment),Os10g0128600 protein (Fragment),Os10g0125400 protein,Os10g0125300 protein,Os10g0127000 protein (Fragment),F-box domain containing protein, expressed (Os10g0127900 protein),Os10g0128800 protein,Os10g0129100 protein,Os10g0126900 protein Q33BA3,Q0IZ64,Q0IZ60,B9G7B8,B9G7B7,Q0IZ66,Q33B97,A0A0N7KRD9,A0A0P0XS48,A0A0P0XRU4,A0A0N7KRD8 Q33BA3_ORYSJ,Q0IZ64_ORYSJ,Q0IZ60_ORYSJ,B9G7B8_ORYSJ,B9G7B7_ORYSJ,Q0IZ66_ORYSJ,Q33B97_ORYSJ,A0A0N7KRD9_ORYSJ,A0A0P0XS48_ORYSJ,A0A0P0XRU4_ORYSJ,A0A0N7KRD8_ORYSJ Os10g0126600 LOC_Os10g03740 Os10g0126600 OSNPB_100126600,Os10g0127900 OSNPB_100127900,Os10g0128600 Os10g0128600 OSNPB_100128600,Os10g0125400 OsJ_30589 OSNPB_100125400,Os10g0125300 OsJ_30588 OSNPB_100125300,Os10g0127000 OSNPB_100127000,Os10g0127900 LOC_Os10g03850 OSNPB_100127900,Os10g0128800 OSNPB_100128800,Os10g0129100 OSNPB_100129100,Os10g0126900 OSNPB_100126900 ENOG411E17J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Os02g0301800 protein (Putative LZ-NBS-LRR class RGA),Os02g0301800 protein Q6K4U3,A0A0P0VI14 Q6K4U3_ORYSJ,A0A0P0VI14_ORYSJ P0477B05.2-1 Os02g0301800 OsJ_06375 OSJNBa0010K08.34-1 OSNPB_020301800,Os02g0301800 OSNPB_020301800 ENOG411E17I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family NA NA NA NA NA NA NA ENOG411E17G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_10 Os05g0305000 protein,Os05g0304900 protein (Fragment) Q0DJB3,A0A0P0WKL7 Q0DJB3_ORYSJ,A0A0P0WKL7_ORYSJ Os05g0305000 Os05g0305000 OsJ_17982 OSNPB_050305000,Os05g0304900 OSNPB_050304900 ENOG411E17E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os01g0596300 protein (Ribosomal RNA apurinic site specific lyase-like) (cDNA clone:J023007D17, full insert sequence) Q8LQV5 Q8LQV5_ORYSJ Os01g0596300 Os01g0596300 B1103C09.28 OSNPB_010596300 ENOG411E17D Q8RWT5,O64767 Q8RWT5_ARATH,O64767_ARATH AICARFT/IMPCHase bienzyme family protein (Putative phosphoribosylaminoimidazolecarboxamide formyltransferase) ARA:AT2G35040-MONOMER; R-ATH-73817; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),One carbon pool by folate (00670),Metabolic pathways (01100) 64907,59471 AICARFT/IMPCHase bienzyme family protein (Putative phosphoribosylaminoimidazolecarboxamide formyltransferase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; stromule [GO:0010319]; IMP cyclohydrolase activity [GO:0003937]; phosphoribosylaminoimidazolecarboxamide formyltransferase activity [GO:0004643]; purine nucleotide biosynthetic process [GO:0006164]; response to cold [GO:0009409],IMP cyclohydrolase activity [GO:0003937]; phosphoribosylaminoimidazolecarboxamide formyltransferase activity [GO:0004643]; purine nucleotide biosynthetic process [GO:0006164] locus:2044807; AT2G35040 bifunctional purine biosynthesis protein Os08g0206600 protein (Putative aminoimidazolecarboximide ribonucleotide transformylase) (cDNA clone:J033107D20, full insert sequence),Os08g0206600 protein (Putative aminoimidazolecarboximide ribonucleotide transformylase) Q6ZKK5,Q6ZKK4 Q6ZKK5_ORYSJ,Q6ZKK4_ORYSJ OJ1119_C05.21-1 Os08g0206600 OSNPB_080206600,OJ1119_C05.21-2 Os08g0206600 OsJ_26411 OSNPB_080206600 ENOG411E17C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sucrose-phosphate phosphatase activity Sucrose-phosphatase 2 (OsSPP2) (EC 3.1.3.24),Probable sucrose-phosphatase 3 (OsSPP3) (EC 3.1.3.24),Probable sucrose-phosphatase 1 (OsSPP1) (EC 3.1.3.24),Os05g0144900 protein Q6YXW6,A3AZW5,Q94E75,A0A0P0WHY2 SPP2_ORYSJ,SPP3_ORYSJ,SPP1_ORYSJ,A0A0P0WHY2_ORYSJ SPP2 Os02g0143100 LOC_Os02g05030 OsJ_005195 OSJNBa0064G16.2,SPP3 Os05g0144900 LOC_Os05g05270 OsJ_016337 OSJNBb0015A05.2,SPP1 Os01g0376700 LOC_Os01g27880 B1111C09.29 OsJ_001789 OsJ_01840,Os05g0144900 OSNPB_050144900 FUNCTION: Catalyzes the final step of sucrose synthesis. Inactive with fructose 6-phosphate as substrate.,FUNCTION: Catalyzes the final step of sucrose synthesis. {ECO:0000250}. ENOG411E17A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60Kd inner membrane protein NA NA NA NA NA NA NA ENOG411E17Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinacetylesterase Pectin acetylesterase (EC 3.1.1.-) Q94D71 Q94D71_ORYSJ Os01g0319000 B1153F04.18 OsJ_01514 OSNPB_010319000 P0028G04.42 FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. ENOG411E17X UGT76C2 Q9FIA0 U76C2_ARATH UDP-glycosyltransferase 76C2 (EC 2.4.1.-) (Cytokinin-N-glucosyltransferase 2) FUNCTION: Involved in the N-glucosylation of cytokinins. Catalyzes the formation of both the 7-N and the 9-N-glucosides. {ECO:0000269|PubMed:15342621}. MetaCyc:AT5G05860-MONOMER; 2.4.1.118; 2.4.1.- 50425 UDP-glycosyltransferase 76C2 (EC 2.4.1.-) (Cytokinin-N-glucosyltransferase 2) intracellular membrane-bounded organelle [GO:0043231]; cytokinin 7-beta-glucosyltransferase activity [GO:0047807]; cytokinin 9-beta-glucosyltransferase activity [GO:0080062]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; abscisic acid-activated signaling pathway involved in stomatal movement [GO:1901527]; cellular response to water deprivation [GO:0042631]; cytokinin metabolic process [GO:0009690]; regulation of anthocyanin catabolic process [GO:1900000]; seed development [GO:0048316] locus:2166444; AT5G05860 UDP-glucoronosyl and UDP-glucosyl transferase Os07g0241700 protein A0A0P0X4M7 A0A0P0X4M7_ORYSJ Os07g0241700 OSNPB_070241700 ENOG411E17W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Elp3 NA NA NA NA NA NA NA ENOG411E17U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0589600 protein Q7EZ23 Q7EZ23_ORYSJ Os07g0589600 OJ1174_G05.7 OSJNBb0005G07.134 OSNPB_070589600 ENOG411E17T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nuclear pore complex protein Os12g0456400 protein Q0ING6 Q0ING6_ORYSJ Os12g0456400 Os12g0456400 OSNPB_120456400 ENOG411E17S MOP9.4 F4KFR6,Q8GW37 F4KFR6_ARATH,Q8GW37_ARATH Alpha/beta-Hydrolases superfamily protein,At5g24230 (Lipase class 3-related protein) (Uncharacterized protein At5g24230/MOP9_4) 39085,41545 Alpha/beta-Hydrolases superfamily protein,At5g24230 (Lipase class 3-related protein) (Uncharacterized protein At5g24230/MOP9_4) hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2151852;,locus:2169764; AT5G24200,AT5G24230 Lipase (class 3) NA NA NA NA NA NA NA ENOG411E17R Q84K72 Q84K72_ARATH Forkhead-associated domain protein (Uncharacterized protein At1g06510) 30808 Forkhead-associated domain protein (Uncharacterized protein At1g06510) chloroplast [GO:0009507] locus:2009135; AT1G06510 NA Os01g0696000 protein C7IWB0,A2ZWV2 C7IWB0_ORYSJ,A2ZWV2_ORYSJ Os01g0696000 Os01g0696000 OSNPB_010696000,Os01g0696000 OsJ_03118 OSNPB_010696000 ENOG411E17Q NAC104,XND1 Q8GWK6,A0A1P8BFW3 NC104_ARATH,A0A1P8BFW3_ARATH NAC domain-containing protein 104 (ANAC104) (Protein XYLEM NAC DOMAIN 1),Xylem NAC domain 1 DISRUPTION PHENOTYPE: Reduced plant height and length of tracheary elements in the stem. {ECO:0000269|PubMed:18069942}. FUNCTION: Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. MISCELLANEOUS: Plants over-expressing NAC104 show severe dwarfism and suppression of tracheary element differentiation. 21558,18083 NAC domain-containing protein 104 (ANAC104) (Protein XYLEM NAC DOMAIN 1),Xylem NAC domain 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of programmed cell death [GO:0043067]; shoot system development [GO:0048367]; transcription, DNA-templated [GO:0006351]; xylem development [GO:0010089],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. locus:2174769; AT5G64530 (NAC) domain-containing protein OSJNBa0006B20.9 protein (Os04g0437000 protein) (cDNA, clone: J100082O14, full insert sequence),Os02g0555300 protein (Putative NAC domain protein NAC2) Q7XV60,Q69ST3 Q7XV60_ORYSJ,Q69ST3_ORYSJ Os04g0437000 Os04g0437000 OsJ_14893 OSJNBa0006B20.9 OSNPB_040437000,Os02g0555300 OsJ_07126 OSNPB_020555300 P0470G10.30 ENOG411E17P Q9CAH1 Y1725_ARATH Putative receptor-like protein kinase At1g72540 (EC 2.7.11.1) 2.7.11.1 50875 Putative receptor-like protein kinase At1g72540 (EC 2.7.11.1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2030185; AT1G72540 receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EB7A PVA43 Q8LPQ7 VAP43_ARATH Vesicle-associated protein 4-3 (Plant VAP homolog 4-3) (AtPVA43) (VAMP-associated protein 4-3) FUNCTION: May play a role in vesicle trafficking. {ECO:0000250}. 31963 Vesicle-associated protein 4-3 (Plant VAP homolog 4-3) (AtPVA43) (VAMP-associated protein 4-3) endoplasmic reticulum membrane [GO:0005789] locus:2138401; AT4G05060 Vesicle-associated membrane family protein NA NA NA NA NA NA NA ENOG411EB7B F11C1_20,F3A4.210 Q9SNE9,A0A1I9LM82,Q9SN05,A0A1I9LMA3,F4IZC0,A0A1I9LM83,F4IZB4 Q9SNE9_ARATH,A0A1I9LM82_ARATH,Q9SN05_ARATH,A0A1I9LMA3_ARATH,F4IZC0_ARATH,A0A1I9LM83_ARATH,F4IZB4_ARATH Transmembrane protein, putative (DUF247) (Uncharacterized protein F11C1_20),Transmembrane protein, putative (DUF247),Transmembrane protein, putative (DUF247) (Uncharacterized protein F3A4.210) 67632,44369,66603,48830,58426,41644,63595 Transmembrane protein, putative (DUF247) (Uncharacterized protein F11C1_20),Transmembrane protein, putative (DUF247),Transmembrane protein, putative (DUF247) (Uncharacterized protein F3A4.210) integral component of membrane [GO:0016021] locus:2074760;,locus:2083093;,locus:2074770;,locus:2083108; AT3G50180,AT3G50130,AT3G50190,AT3G50140 Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EB7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha-L-arabinofuranosidase C-terminus Os11g0132000 protein (Fragment) A0A0N7KSD7 A0A0N7KSD7_ORYSJ Os11g0132000 OSNPB_110132000 ENOG411EB7D Q1KS79,Q9SIV7,Q9FX02,Q0V7S0,Q9ZQF0,O80608,Q8S8C7,O80758,A0A1P8AWB5,O64711,F4HT76 FB116_ARATH,FB108_ARATH,FB38_ARATH,FB39_ARATH,FB104_ARATH,FB96_ARATH,FB105_ARATH,FB68_ARATH,A0A1P8AWB5_ARATH,O64711_ARATH,F4HT76_ARATH F-box protein At2g23160,F-box protein At2g16450,Putative F-box protein At1g47300,F-box protein At1g47340,F-box protein At2g15640,Putative F-box protein At2g02890,Putative F-box protein At2g16220,Putative F-box protein At1g60370,F-box and associated interaction domains-containing protein,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g02660),F-box associated ubiquitination effector family protein 35916,49580,36590,53454,49576,60428,47364,32617,50062,48625,61970 F-box protein At2g23160,F-box protein At2g16450,Putative F-box protein At1g47300,F-box protein At1g47340,F-box protein At2g15640,Putative F-box protein At2g02890,Putative F-box protein At2g16220,Putative F-box protein At1g60370,F-box and associated interaction domains-containing protein,F-box associated ubiquitination effector family protein (Uncharacterized protein At2g02660),F-box associated ubiquitination effector family protein locus:2058603;,locus:2042659;,locus:2203761;,locus:2203736;,locus:2053557;,locus:2056735;,locus:2053006;,locus:2195578;,locus:2065325;,locus:2203731; AT2G23160,AT2G16450,AT1G47300,AT1G47340,AT2G15640,AT2G02890,AT2G16220,AT1G60370,AT2G02660,AT1G47350 F-box associated domain NA NA NA NA NA NA NA ENOG411EB7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EB7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling (By similarity) NA NA NA NA NA NA NA ENOG411EB7G TEL2 Q9FXE0 Q9FXE0_ARATH F12A21.10 (RNA-binding protein) (Terminal EAR1-like 2) 60374 F12A21.10 (RNA-binding protein) (Terminal EAR1-like 2) RNA binding [GO:0003723] locus:2008530; AT1G67770 RNA recognition motif 2 NA NA NA NA NA NA NA ENOG411EB7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EB7I RHS6 Q9FZB1,C0LGG6,C0LGG4,A0A1P8AW67,A0A1P8AV24,A0A1P8AQ28,A0A1P8AV20,A0A1P8AQZ6,A0A1P8AUY6,A0A1P8AQ00,F4IB71 Y5188_ARATH,Y5189_ARATH,Y1518_ARATH,A0A1P8AW67_ARATH,A0A1P8AV24_ARATH,A0A1P8AQ28_ARATH,A0A1P8AV20_ARATH,A0A1P8AQZ6_ARATH,A0A1P8AUY6_ARATH,A0A1P8AQ00_ARATH,F4IB71_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 (EC 2.7.11.1),Probable LRR receptor-like protein kinase At1g51890 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g51860 (EC 2.7.11.1),Protein kinase family protein,Leucine-rich repeat protein kinase family protein,Root hair specific 6 2.7.11.1 97284,98563,99234,98960,91357,100402,83138,82943,67680,99428,93165 Probable LRR receptor-like serine/threonine-protein kinase At1g51880 (EC 2.7.11.1),Probable LRR receptor-like protein kinase At1g51890 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g51860 (EC 2.7.11.1),Protein kinase family protein,Leucine-rich repeat protein kinase family protein,Root hair specific 6 integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to bacterium [GO:0042742],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2195845;,locus:2195850;,locus:2195830; AT1G51880,AT1G51890,AT1G51860,AT1G51870 STYKc NA NA NA NA NA NA NA ENOG411EB7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB7K ABIL4 Q9FHY1,A0A1P8BAJ6,A0A1P8BAJ4,A0A1P8BAJ0 ABIL4_ARATH,A0A1P8BAJ6_ARATH,A0A1P8BAJ4_ARATH,A0A1P8BAJ0_ARATH Protein ABIL4 (Abl interactor-like protein 4) (AtABIL4),ABL interactor-like protein 4 FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity). {ECO:0000250}. 31652,36925,23328,26392 Protein ABIL4 (Abl interactor-like protein 4) (AtABIL4),ABL interactor-like protein 4 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856] locus:2165730; AT5G42030 Abl interactor-like protein 4 NA NA NA NA NA NA NA ENOG411EB7M EIL2 O23115,A0A1P8BG66 EIL2_ARATH,A0A1P8BG66_ARATH ETHYLENE INSENSITIVE 3-like 2 protein,ETHYLENE-INSENSITIVE3-like 2 FUNCTION: Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. 59186,59952 ETHYLENE INSENSITIVE 3-like 2 protein,ETHYLENE-INSENSITIVE3-like 2 intracellular [GO:0005622]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to iron ion [GO:0071281]; ethylene-activated signaling pathway [GO:0009873]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2178988; AT5G21120 Ethylene insensitive 3 NA NA NA NA NA NA NA ENOG411EB7N SRS2 O65517 SRS2_ARATH Protein SHI RELATED SEQUENCE 2 (Protein STYLISH 2) DISRUPTION PHENOTYPE: No visible phenotype. The double mutant sty1-1 and sty2-1 has a reduction in the amount of stylar and stigmatic tissues and decreased proliferation of stylar xylem, as well as shorter siliques and rosette and cauline leaves with a higher degree of serration. Hypersensitive to 1-N-naphthylphtalamic acid (NPA), but restored by exogenous application of auxin. {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. 34144 Protein SHI RELATED SEQUENCE 2 (Protein STYLISH 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275] DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. In carpels, first observed at late development stage in the most apical parts of the open-ended gynoecium. Accumulates in differentiating style and stigmatic tissues. Not expressed in the stigma after fertilization but remains in the style until full silique maturation. Also detected in anthers. In seedlings, present in the shoot apex and in cotyledons, leaf primordia, stipules, hydathodes and in primordia of lateral roots. Detected in developing trichomes and in leaf and pedicel attachment sites. {ECO:0000269|PubMed:12361963}. TISSUE SPECIFICITY: Expressed in seedlings, roots, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:12361963}. locus:2122234; AT4G36260 Domain of unknown function (DUF702) NA NA NA NA NA NA NA ENOG411EB7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Methyltransferase NA NA NA NA NA NA NA ENOG411EB7Q A0A1P8AVV8 A0A1P8AVV8_ARATH F-box/associated interaction domain protein 22246 F-box/associated interaction domain protein F-box associated domain NA NA NA NA NA NA NA ENOG411EB7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os07g0180100 protein,Os08g0216000 protein,Os10g0541700 protein Q6ZLC8,A0A0P0XD31,A0A0P0XX86 Q6ZLC8_ORYSJ,A0A0P0XD31_ORYSJ,A0A0P0XX86_ORYSJ Os07g0180100 OJ1014_E09.18 OsJ_23321 OSNPB_070180100,Os08g0216000 OSNPB_080216000,Os10g0541700 OSNPB_100541700 ENOG411EB7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF716) NA NA NA NA NA NA NA ENOG411EB7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase NA NA NA NA NA NA NA ENOG411EB7U FBX10 Q9FHW4,O80980,Q9LQL4,Q9SYD0,Q9LUS6,Q9LUS5,Q4PSZ1 FB266_ARATH,FB319_ARATH,FBK19_ARATH,FBX10_ARATH,FBK55_ARATH,FB146_ARATH,Q4PSZ1_ARATH Putative F-box protein At5g37040,F-box protein At2g14710,Putative F-box/kelch-repeat protein At1g32430,Putative F-box only protein 10,F-box/kelch-repeat protein At3g16580,Putative F-box protein At3g16590,F-box associated ubiquitination effector family protein (F-box family protein-related) 27698,41656,45579,44620,44414,43870,19150 Putative F-box protein At5g37040,F-box protein At2g14710,Putative F-box/kelch-repeat protein At1g32430,Putative F-box only protein 10,F-box/kelch-repeat protein At3g16580,Putative F-box protein At3g16590,F-box associated ubiquitination effector family protein (F-box family protein-related) ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],vacuole [GO:0005773]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2166148;,locus:2046941;,locus:2033750;,locus:2008256;,locus:2089403;,locus:2089408;,locus:505006181; AT5G37040,AT2G14710,AT1G32430,AT1G51290,AT3G16580,AT3G16590,AT1G53325 f-box family NA NA NA NA NA NA NA ENOG411EB7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger NA NA NA NA NA NA NA ENOG411EB7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ankyrin containing protein (ISS) NA NA NA NA NA NA NA ENOG411EB7X F22O6_90 Q9SVD4 Q9SVD4_ARATH At3g52530 (Protein kinase superfamily protein) (Uncharacterized protein F22O6_90) 39538 At3g52530 (Protein kinase superfamily protein) (Uncharacterized protein F22O6_90) mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2079959; AT3G52530 STYKc NA NA NA NA NA NA NA ENOG411EB7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aluminum-activated malate transporter 2-like NA NA NA NA NA NA NA ENOG411EB7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31) A0A0P0XM35 A0A0P0XM35_ORYSJ Os09g0435250 OSNPB_090435250 ENOG411EB70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB71 TIP1-2 Q41963 TIP12_ARATH Aquaporin TIP1-2 (Gamma-tonoplast intrinsic protein 2) (Gamma-TIP2) (Salt stress-induced tonoplast intrinsic protein) (Tonoplast intrinsic protein 1-2) (AtTIP1;2) FUNCTION: Water channel required to facilitate the transport of water across cell membrane. May be involved in the osmoregulation in plants under high osmotic stress such as under a high salt condition. Transports urea in yeast cells in a pH-independent manner. Transports H(2)O(2) in yeast cells. {ECO:0000269|PubMed:10102577, ECO:0000269|PubMed:14576283, ECO:0000269|PubMed:17105724}. R-ATH-432047; 25849 Aquaporin TIP1-2 (Gamma-tonoplast intrinsic protein 2) (Gamma-TIP2) (Salt stress-induced tonoplast intrinsic protein) (Tonoplast intrinsic protein 1-2) (AtTIP1;2) central vacuole [GO:0042807]; chloroplast [GO:0009507]; columella [GO:0043674]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; water channel activity [GO:0015250]; defense response to bacterium [GO:0042742]; hydrogen peroxide transmembrane transport [GO:0080170]; ion transmembrane transport [GO:0034220]; water homeostasis [GO:0030104] DEVELOPMENTAL STAGE: Starts to be expressed in seedlings from 2 days ays after germination. {ECO:0000269|PubMed:14576283}. TISSUE SPECIFICITY: Widely expressed. Predominantly expressed in roots. locus:2088867; AT3G26520 tonoplast intrinsic protein 2 NA NA NA NA NA NA NA ENOG411EB72 PRMT12 O82210 ANM12_ARATH Probable protein arginine N-methyltransferase 1.2 (AtPRMT12) (EC 2.1.1.-) FUNCTION: Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain. Type I arginine methyltransferase active on both histones and non-histone proteins. Mediates the methylation of MED36A. {ECO:0000269|PubMed:17666011}. R-ATH-3214858; 2.1.1.- 41172 Probable protein arginine N-methyltransferase 1.2 (AtPRMT12) (EC 2.1.1.-) cytosol [GO:0005829]; nucleus [GO:0005634]; histone-arginine N-methyltransferase activity [GO:0008469]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2051995; AT2G19670 PRMT5 arginine-N-methyltransferase NA NA NA NA NA NA NA ENOG411EB73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminopeptidase I zinc metalloprotease (M18) NA NA NA NA NA NA NA ENOG411EB74 CAR3 Q9C6B7 CAR3_ARATH Protein C2-DOMAIN ABA-RELATED 3 FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). {ECO:0000250|UniProtKB:Q9FHP6, ECO:0000250|UniProtKB:Q9LVH4}. 19117 Protein C2-DOMAIN ABA-RELATED 3 nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547] locus:2035042; AT1G73580 C2 domain-containing protein NA NA NA NA NA NA NA ENOG411EB75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os03g0147200 protein,Os01g0927700 protein,Os03g0105300 protein (Fragment),Os05g0302075 protein,Os05g0302200 protein A0A0P0VSX7,A0A0P0VCM7,A0A0P0VRY1,A0A0N7KKH5,A0A0P0WKL5 A0A0P0VSX7_ORYSJ,A0A0P0VCM7_ORYSJ,A0A0P0VRY1_ORYSJ,A0A0N7KKH5_ORYSJ,A0A0P0WKL5_ORYSJ Os03g0147200 OSNPB_030147200,Os01g0927700 OSNPB_010927700,Os03g0105300 OSNPB_030105300,Os05g0302075 OSNPB_050302075,Os05g0302200 OSNPB_050302200 ENOG411EB76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EB77 PLC3 Q56W08 PLCD3_ARATH Phosphoinositide phospholipase C 3 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC3) (AtPLC1F) (AtPLC3) (PI-PLC3) FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. {ECO:0000269|Ref.6}. ARA:AT4G38530-MONOMER; R-ATH-112043;R-ATH-114604;R-ATH-1855204;R-ATH-202433;R-ATH-399997;R-ATH-416476;R-ATH-434316;R-ATH-5607764; 3.1.4.11; Phosphatidylinositol signaling system (04070),Calcium signaling pathway (04020),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.4.11 64944 Phosphoinositide phospholipase C 3 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC3) (AtPLC1F) (AtPLC3) (PI-PLC3) intracellular [GO:0005622]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Expressed in leaves, roots and siliques, but not in flowers. {ECO:0000269|Ref.6}. locus:2121239; AT4G38530 phospholipase C NA NA NA NA NA NA NA ENOG411EB78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Galactosyl_T_2 NA NA NA NA NA NA NA ENOG411EB79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: seryl-tRNA synthetase NA NA NA NA NA NA NA ENOG411E4A8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like NA NA NA NA NA NA NA ENOG411E4A9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 NA NA NA NA NA NA NA ENOG411E4A4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os06g0691100 protein (Putative ethylene responsive element binding factor) Q654Y5 Q654Y5_ORYSJ Os06g0691100 Os06g0691100 OSNPB_060691100 P0532H03.9 P0661G04.42 ENOG411E4A5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0304400 protein Q9FP50 Q9FP50_ORYSJ Os01g0304400 Os01g0304400 OSNPB_010304400 P0475H04.20 ENOG411E4A6 Q93VF4,F4JVF3,A0A1P8B4S3,B9DG35 Q93VF4_ARATH,F4JVF3_ARATH,A0A1P8B4S3_ARATH,B9DG35_ARATH Histone acetyltransferase subunit NuA4-domain protein (Uncharacterized protein At4g14385) (Uncharacterized protein At4g14385/FCAALL.166),Histone acetyltransferase subunit NuA4-domain protein,AT4G14385 protein (Histone acetyltransferase subunit NuA4-domain protein) R-ATH-3214847; 17825,14673,12121,17296 Histone acetyltransferase subunit NuA4-domain protein (Uncharacterized protein At4g14385) (Uncharacterized protein At4g14385/FCAALL.166),Histone acetyltransferase subunit NuA4-domain protein,AT4G14385 protein (Histone acetyltransferase subunit NuA4-domain protein) histone acetyltransferase complex [GO:0000123]; vacuole [GO:0005773]; transferase activity [GO:0016740]; histone acetylation [GO:0016573],histone acetyltransferase complex [GO:0000123]; transferase activity [GO:0016740]; histone acetylation [GO:0016573] locus:505006459; AT4G14385 Chromatin modification-related protein Expressed protein (Os01g0233400 protein) (Os12g0298600 protein) Q5NAY1 Q5NAY1_ORYSJ Os12g0298600 LOC_Os12g20310 Os01g0233400 OsJ_35836 OSNPB_010233400 OSNPB_120298600 P0702F03.10 ENOG411E4A7 A0A1P8ASY7 A0A1P8ASY7_ARATH Myosin heavy chain-like protein 72405 Myosin heavy chain-like protein response to cadmium ion [GO:0046686] locus:2014245; AT1G64320 NA NA NA NA NA NA NA NA ENOG411E4A0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein Os03g0305400 protein (Universal stress protein family protein, expressed) Q10MK7 Q10MK7_ORYSJ Os03g0305400 LOC_Os03g19270 Os03g0305400 OSNPB_030305400 ENOG411E4A1 BBX20 Q0IGM7 BBX20_ARATH B-box zinc finger protein 20 (Protein BZR1 SUPPRESSOR 1) (Protein DOUBLE B-BOX 2) (Protein SALT TOLERANCE HOMOLOG 7) FUNCTION: Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. 26780 B-box zinc finger protein 20 (Protein BZR1 SUPPRESSOR 1) (Protein DOUBLE B-BOX 2) (Protein SALT TOLERANCE HOMOLOG 7) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; zinc ion binding [GO:0008270]; negative regulation of brassinosteroid mediated signaling pathway [GO:1900458]; positive regulation of photomorphogenesis [GO:2000306]; regulation of transcription, DNA-templated [GO:0006355]; response to brassinosteroid [GO:0009741]; response to chitin [GO:0010200]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351] locus:2120207; AT4G39070 Zinc finger (B-box type) family protein NA NA NA NA NA NA NA ENOG411E4A2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0595700 protein Q84RV9 Q84RV9_ORYSJ OJ1710_H11.138 P0453E05.101 Os07g0595700 OSNPB_070595700 ENOG411E4A3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) Os05g0390300 protein A0A0P0WLV0 A0A0P0WLV0_ORYSJ Os05g0390300 OSNPB_050390300 ENOG411E4AN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Yippee Protein yippee-like Q10QK2 Q10QK2_ORYSJ LOC_Os03g09290 Os03g0193075 OSNPB_030193075 ENOG411E4AH Q8GWI1 Q8GWI1_ARATH Ankyrin repeat family protein (Uncharacterized protein At5g12320) 15664 Ankyrin repeat family protein (Uncharacterized protein At5g12320) intracellular [GO:0005622] locus:505006600; AT5G12320 Ankyrin repeat NA NA NA NA NA NA NA ENOG411E4AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0131200 protein),Os01g0153700 protein (cDNA clone:001-204-B08, full insert sequence),Os08g0294600 protein,Os03g0596600 protein (Fragment),Os12g0495500 protein,Os06g0482850 protein,Os04g0155550 protein,Os04g0342000 protein,Os06g0570800 protein,Os09g0125500 protein,Os06g0599700 protein Q7G5D0,Q5ZD78,A0A0P0XEC3,A0A0N7KHL6,A0A0P0YAD5,A0A0P0WWW3,A0A0P0W764,A0A0P0W8X2,A0A0P0WY25,A0A0N7KQD4,A0A0P0WYW8 Q7G5D0_ORYSJ,Q5ZD78_ORYSJ,A0A0P0XEC3_ORYSJ,A0A0N7KHL6_ORYSJ,A0A0P0YAD5_ORYSJ,A0A0P0WWW3_ORYSJ,A0A0P0W764_ORYSJ,A0A0P0W8X2_ORYSJ,A0A0P0WY25_ORYSJ,A0A0N7KQD4_ORYSJ,A0A0P0WYW8_ORYSJ LOC_Os10g04130 Os10g0131200 OSNPB_100131200,Os01g0153700 Os01g0153700 OSNPB_010153700 P0030H07.31,Os08g0294600 OSNPB_080294600,Os03g0596600 OSNPB_030596600,Os12g0495500 OSNPB_120495500,Os06g0482850 OSNPB_060482850,Os04g0155550 OSNPB_040155550,Os04g0342000 OSNPB_040342000,Os06g0570800 OSNPB_060570800,Os09g0125500 OSNPB_090125500,Os06g0599700 OSNPB_060599700 ENOG411E4AF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0582000 protein A0A0P0Y3U9 A0A0P0Y3U9_ORYSJ Os11g0582000 OSNPB_110582000 ENOG411E4AG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os09g0493000 protein (cDNA clone:002-132-G04, full insert sequence),Os06g0259800 protein,Os09g0492900 protein,Os06g0259850 protein (Fragment) Q0J0M5,A0A0P0WV38,A0A0P0XPU0,A0A0P0WVB1 Q0J0M5_ORYSJ,A0A0P0WV38_ORYSJ,A0A0P0XPU0_ORYSJ,A0A0P0WVB1_ORYSJ Os09g0493000 Os09g0493000 OSNPB_090493000,Os06g0259800 OSNPB_060259800,Os09g0492900 OSNPB_090492900,Os06g0259850 OSNPB_060259850 ENOG411E4AA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Jacalin-like lectin domain containing protein, expressed (Os10g0132300 protein) (cDNA clone:002-180-H05, full insert sequence),Os03g0399800 protein (Fragment),Os03g0399900 protein (Fragment) Q33B84,Q0DRB3,A0A0P0VZC0 Q33B84_ORYSJ,Q0DRB3_ORYSJ,A0A0P0VZC0_ORYSJ Os10g0132300 LOC_Os10g04270 Os10g0132300 OSNPB_100132300,Os03g0399800 Os03g0399800 OSNPB_030399800,Os03g0399900 OSNPB_030399900 ENOG411E4AB BOLA4,BolA4 Q9LF68,A0A1P8BBE1,A0A1P8BBD0 BOLA4_ARATH,A0A1P8BBE1_ARATH,A0A1P8BBD0_ARATH Protein BOLA4, chloroplastic/mitochondrial,BolA-like family protein FUNCTION: May act either alone or in interaction with glutaredoxin as a redox-regulated transcriptional regulator, or as a factor regulating Fe-S cluster biogenesis. {ECO:0000305|PubMed:24203231}. 19538,15057,14447 Protein BOLA4, chloroplastic/mitochondrial,BolA-like family protein chloroplast [GO:0009507]; mitochondrion [GO:0005739] locus:2151396; AT5G17560 BolA-like protein BolA-like (Os06g0484600 protein) (cDNA clone:001-108-C06, full insert sequence) Q67VQ4 Q67VQ4_ORYSJ Os06g0484600 OsJ_21386 OSJNBb0026F02.25 OSNPB_060484600 ENOG411E4AX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0924200 protein (cDNA clone:006-207-G11, full insert sequence) (cDNA clone:J023080J04, full insert sequence),Expressed protein (Os12g0460400 protein) Q5JJP9,Q2QRI4 Q5JJP9_ORYSJ,Q2QRI4_ORYSJ Os01g0924200 Os01g0924200 B1033B05.4 OsJ_04597 OSNPB_010924200 P0592G05.28,Os12g0460400 LOC_Os12g27470 OsJ_24273 OSNPB_120460400 ENOG411E4AZ PNSB3 Q9LU21 PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic (Protein PnsB3) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 4) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:18785996}. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 22418 Photosynthetic NDH subunit of subcomplex B 3, chloroplastic (Protein PnsB3) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 4) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; photosynthetic electron transport in photosystem I [GO:0009773]; transport [GO:0006810] locus:2094882; AT3G16250 2Fe-2S iron-sulfur cluster binding domain 2Fe-2S iron-sulfur cluster protein-like (Os07g0489800 protein) (cDNA clone:J013135M05, full insert sequence) Q7XHS1 Q7XHS1_ORYSJ Os07g0489800 OsJ_24289 OSNPB_070489800 P0477A12.11 ENOG411E4AU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GEM-like protein NA NA NA NA NA NA NA ENOG411E4AV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein NA NA NA NA NA NA NA ENOG411E4AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance response protein Dirigent protein Q8H3X4 Q8H3X4_ORYSJ P0585H11.104 B1317D11.138 Os07g0107300 OsJ_22808 OSNPB_070107300 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E4AQ Q9ZR13,A0A1P8B3A5 Q9ZR13_ARATH,A0A1P8B3A5_ARATH At4g03180 (Uncharacterized protein At4g03180) (Uncharacterized protein F4C21.10) (rRNA-processing protein),rRNA-processing protein 21693,16425 At4g03180 (Uncharacterized protein At4g03180) (Uncharacterized protein F4C21.10) (rRNA-processing protein),rRNA-processing protein locus:2125512; AT4G03180 rRNA processing Expressed protein (Os12g0538100 protein) (cDNA clone:002-155-H05, full insert sequence) Q2QP93 Q2QP93_ORYSJ LOC_Os12g35270 Os12g0538100 OsJ_36369 OSNPB_120538100 ENOG411DZRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lectin-like protein kinase Os02g0712600 protein (Putative lectin-like protein kinase),Os06g0328400 protein (Putative lectin-like protein kinase) (cDNA clone:J033041O05, full insert sequence),Os02g0712700 protein Q6ZIQ9,Q69PR8,Q0DY65 Q6ZIQ9_ORYSJ,Q69PR8_ORYSJ,Q0DY65_ORYSJ Os02g0712600 OJ1038_A06.32 OSNPB_020712600,Os06g0328400 OSJNBb0039F24.37 OSNPB_060328400 P0019A05.24,Os02g0712700 Os02g0712700 OSNPB_020712700 ENOG411DZRI Q0WTZ4,A0A1P8ANR0,A8MRX6,F4I765 Q0WTZ4_ARATH,A0A1P8ANR0_ARATH,A8MRX6_ARATH,F4I765_ARATH HIT-type Zinc finger family protein (Uncharacterized protein At1g04945),HIT-type Zinc finger family protein Albino phenotype even in the youngest part of the seedling which often accumulates anthocyanins.,Seedlings grown in artificial media supplemented with sucrose are able to produce a few irregularly shaped leaves followed by an arrest in growth. The timing of growth arrest varies from one seedling to the next leading to a variety of sizes and morphologies. 45060,41258,42206,73739 HIT-type Zinc finger family protein (Uncharacterized protein At1g04945),HIT-type Zinc finger family protein metal ion binding [GO:0046872],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872] locus:4010713413; AT1G04945 box C D snoRNA protein 1-like Os01g0962500 protein (cDNA clone:001-203-D08, full insert sequence) (cDNA clone:J033024I07, full insert sequence) Q5JMS5 Q5JMS5_ORYSJ Os01g0962500 Os01g0962500 OSNPB_010962500 P0483G10.26 ENOG411DZRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Os03g0849800 protein (Fragment),Os03g0849800 protein Q0DLS4,A0A0P0W5K9 Q0DLS4_ORYSJ,A0A0P0W5K9_ORYSJ Os03g0849800 OSNPB_030849800 ENOG411DZRM Q9SA85 BBE8_ARATH Berberine bridge enzyme-like 8 (AtBBE-like 8) (EC 1.1.1.-) ARA:AT1G30700-MONOMER; 1.1.1.- 59514 Berberine bridge enzyme-like 8 (AtBBE-like 8) (EC 1.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614] locus:2204604; AT1G30700 reticuline oxidase-like protein-like NA NA NA NA NA NA NA ENOG411DZRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family Os01g0783500 protein (Universal stress protein-like) (cDNA clone:J023018C18, full insert sequence),Os05g0501700 protein (cDNA clone:001-007-C02, full insert sequence) Q5ZAV7,Q60EJ0 Q5ZAV7_ORYSJ,Q60EJ0_ORYSJ Os01g0783500 Os01g0783500 B1100D10.39 OSNPB_010783500,Os05g0501700 OSJNBa0017K09.8 OSNPB_050501700 ENOG411DZRA SHH2 Q8RWJ7 SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2 (Probable DNA-binding transcription factor 2) FUNCTION: May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. 38521 Protein SAWADEE HOMEODOMAIN HOMOLOG 2 (Probable DNA-binding transcription factor 2) nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677] locus:2095077; AT3G18380 HOX Os06g0485100 protein (cDNA clone:J013151L16, full insert sequence),Os06g0483900 protein (Fragment),Os06g0485100 protein (cDNA clone:001-006-D08, full insert sequence) Q0DC47,Q0DC52,Q67W46 Q0DC47_ORYSJ,Q0DC52_ORYSJ,Q67W46_ORYSJ Os06g0485100 Os06g0485100 OSNPB_060485100,Os06g0483900 Os06g0483900 OSNPB_060483900,Os06g0485100 OJ1568_D07.5-1 OSNPB_060485100 ENOG411DZRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beta-fructofuranosidase insoluble isoenzyme Beta-fructofuranosidase, insoluble isoenzyme 2 (EC 3.2.1.26) (Cell wall beta-fructosidase 2) (Invertase 2) (OsCIN2) (Protein GRAIN INCOMPLETE FILLING 1) (Sucrose hydrolase 2),Beta-fructofuranosidase, insoluble isoenzyme 1 (EC 3.2.1.26) (Cell wall beta-fructosidase 1) (Invertase 1) (OsCIN1) (Sucrose hydrolase 1) Q0JDC5,Q0E0P0 INV2_ORYSJ,INV1_ORYSJ CIN2 GIF1 Os04g0413500 LOC_Os04g33740 OJ000126_13.8 OsJ_014165,CIN1 Os02g0534400 LOC_Os02g33110 B1136H02.14 OJ1112_G07.1 DISRUPTION PHENOTYPE: Slow grain-filling resulting in reduced weight of grains containinf loosely packed starch granules and reduced levels of amylose and amylopectin. {ECO:0000269|PubMed:18820698}. FUNCTION: Cell wall-associated invertase that cleaves sucrose into glucose and fructose and is required for assimilated carbon partitioning during early grain-filling. May be involved in sucrose unloaded in the ovular and stylar vascular tissues for the stimulation of starch synthesis in the developing endosperm during grain-filling (PubMed:18820698). Sugar homeostasis mediated by CIN2/GIF1 plays an important role in constitutive and induced physical and chemical defense against pathogens (PubMed:24118770). {ECO:0000269|PubMed:18820698, ECO:0000269|PubMed:24118770}.,FUNCTION: May play a role in sucrose partitioning during seed development and in stress response. ENOG411DZRX Q9FX35 PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400, mitochondrial 65679 Pentatricopeptide repeat-containing protein At1g73400, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2206915; AT1G73400 Pentatricopeptide repeat-containing protein Os02g0759500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:002-174-A04, full insert sequence) (cDNA clone:J023077D13, full insert sequence) Q6Z7U2 Q6Z7U2_ORYSJ Os02g0759500 Os02g0759500 OJ1175_B01.6 OsJ_08460 OSNPB_020759500 P0471A11.50 ENOG411DZRZ F26G5_140 Q9C574,Q9LXP4,A0A1I9LQ33,F4K8F9 Q9C574_ARATH,Q9LXP4_ARATH,A0A1I9LQ33_ARATH,F4K8F9_ARATH FAD/NAD(P)-binding oxidoreductase family protein (Uncharacterized protein At5g22140),At3g44190 (FAD/NAD(P)-binding oxidoreductase family protein) (Uncharacterized protein At3g44190) (Uncharacterized protein F26G5_140),FAD/NAD(P)-binding oxidoreductase family protein 39709,40085,34213,33959 FAD/NAD(P)-binding oxidoreductase family protein (Uncharacterized protein At5g22140),At3g44190 (FAD/NAD(P)-binding oxidoreductase family protein) (Uncharacterized protein At3g44190) (Uncharacterized protein F26G5_140),FAD/NAD(P)-binding oxidoreductase family protein Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; oxidoreductase activity [GO:0016491],Golgi apparatus [GO:0005794]; oxidoreductase activity [GO:0016491],oxidoreductase activity [GO:0016491] locus:504956456;,locus:2081373; AT5G22140,AT3G44190 Apoptosis-inducing factor homolog NA NA NA NA NA NA NA ENOG411DZRP FKBP53,FKBP15-3 Q93ZG9,Q9FLB3,F4JSK5 FKB53_ARATH,FK153_ARATH,F4JSK5_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53 (PPIase FKBP53) (EC 5.2.1.8) (FK506-binding protein 53) (AtFKBP53) (Immunophilin FKBP53) (Rotamase),Peptidyl-prolyl cis-trans isomerase FKBP15-3 (PPIase FKBP15-3) (EC 5.2.1.8) (15 kDa FK506-binding protein) (15 kDa FKBP) (FK506-binding protein 15-3) (AtFKBP15-3) (Immunophilin FKBP15-3) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Histone chaperone possibly involved in H3/H4 deposition to the nucleosome. Associates with 18S rDNA chromatin and negatively regulates the level of its expression. {ECO:0000250, ECO:0000269|PubMed:20142844}.,FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 52223,15339,48979 Peptidyl-prolyl cis-trans isomerase FKBP53 (PPIase FKBP53) (EC 5.2.1.8) (FK506-binding protein 53) (AtFKBP53) (Immunophilin FKBP53) (Rotamase),Peptidyl-prolyl cis-trans isomerase FKBP15-3 (PPIase FKBP15-3) (EC 5.2.1.8) (15 kDa FK506-binding protein) (15 kDa FKBP) (FK506-binding protein 15-3) (AtFKBP15-3) (Immunophilin FKBP15-3) (Rotamase),Peptidylprolyl isomerase (EC 5.2.1.8) cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; FK506 binding [GO:0005528]; histone binding [GO:0042393]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; histone peptidyl-prolyl isomerization [GO:0000412]; nucleosome assembly [GO:0006334],peptidyl-prolyl cis-trans isomerase activity [GO:0003755] TISSUE SPECIFICITY: Broadly expressed in leaves, flowers, stems and roots. Detected in root apical meristem region and pollen. {ECO:0000269|PubMed:20142844}. locus:2138029;,locus:2153519; AT4G25340,AT5G05420 Peptidyl-prolyl cis-trans isomerase Peptidylprolyl isomerase (EC 5.2.1.8),Os04g0446500 protein (Fragment) Q7XUX5,A0A0P0WAZ7 Q7XUX5_ORYSJ,A0A0P0WAZ7_ORYSJ Os04g0446500 Os04g0446500 OsJ_14952 OSJNBa0027P08.21 OSNPB_040446500,Os04g0446500 OSNPB_040446500 ENOG411DZRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine protein kinase Os11g0225000 protein (Fragment) Q0ITR7 Q0ITR7_ORYSJ Os11g0225000 OSNPB_110225000 ENOG411DZRS F4I5D5 WTR11_ARATH WAT1-related protein At1g70260 42167 WAT1-related protein At1g70260 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2020688; AT1G70260 Nodulin MtN21 family protein NA NA NA NA NA NA NA ENOG411DZRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: homeobox WUSCHEL-related homeobox 7 (OsWOX7),WUSCHEL-related homeobox 13 (OsWOX13) (Protein WOX9),Os01g0667400 protein (Fragment) Q0JKK6,A3BKM2,A0A0P0V6B4 WOX7_ORYSJ,WOX13_ORYSJ,A0A0P0V6B4_ORYSJ WOX7 Os01g0667400 LOC_Os01g47710 OSJNBb0063G05.20,WOX13 Os07g0533100 LOC_Os07g34880 OsJ_023594 OSJNBa0039D04.15,Os01g0667400 OSNPB_010667400 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411DZRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyco_18 NA NA NA NA NA NA NA ENOG411DZRV Q8RWQ1,A0A1P8B1B8,A0A1P8B196 Q8RWQ1_ARATH,A0A1P8B1B8_ARATH,A0A1P8B196_ARATH At2g44720/F16B22.21 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein R-ATH-72163;R-ATH-75094; 89818,80937,49499 At2g44720/F16B22.21 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2042366; AT2G44710 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DZRW RPI4,MFC16.20 Q9FI13,A0A1P8BDP5 RPI4_ARATH,A0A1P8BDP5_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic (EC 5.3.1.6) (Phosphoriboisomerase 4),NagB/RpiA/CoA transferase-like superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19744161}. FUNCTION: Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. {ECO:0000250}. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1. 5.3.1.6 32163,35682 Probable ribose-5-phosphate isomerase 4, chloroplastic (EC 5.3.1.6) (Phosphoriboisomerase 4),NagB/RpiA/CoA transferase-like superfamily protein chloroplast [GO:0009507]; ribose-5-phosphate isomerase activity [GO:0004751]; pentose-phosphate shunt, non-oxidative branch [GO:0009052],ribose-5-phosphate isomerase activity [GO:0004751]; transferase activity [GO:0016740]; pentose-phosphate shunt, non-oxidative branch [GO:0009052] locus:2163436; AT5G44520 Ribose-5-phosphate isomerase Os03g0781400 protein (Ribose 5-phosphate isomerase, putative, expressed) (cDNA clone:J013082L17, full insert sequence),Os03g0781400 protein Q10CS9,A0A0P0W3T4 Q10CS9_ORYSJ,A0A0P0W3T4_ORYSJ Os03g0781400 LOC_Os03g56869 Os03g0781400 OsJ_12816 OSNPB_030781400,Os03g0781400 OSNPB_030781400 ENOG411DZR8 RPL7AA,RPL7AB P49692,Q9LZH9 RL7A1_ARATH,RL7A2_ARATH 60S ribosomal protein L7a-1,60S ribosomal protein L7a-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 29130,29034 60S ribosomal protein L7a-1,60S ribosomal protein L7a-2 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA [GO:0000470]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA [GO:0000470]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2062057;,locus:2081715; AT2G47610,AT3G62870 60S ribosomal protein 60S ribosomal protein L7a-1,60S ribosomal protein L7a-2,Os01g0924800 protein (Fragment) P35685,P0DKK7,A0A0P0VCB2 RL7A1_ORYSJ,RL7A2_ORYSJ,A0A0P0VCB2_ORYSJ RPL7A-1 Os08g0326400 LOC_Os08g23710 OJ1136_A10.108 P0703C03.43,RPL7A-2 Os09g0507800 LOC_Os09g32976 OsJ_29953,Os01g0924800 OSNPB_010924800 ENOG411DZR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif family protein Os05g0521900 protein A0A0P0WPJ4 A0A0P0WPJ4_ORYSJ Os05g0521900 OSNPB_050521900 ENOG411DZR0 MSH7 Q9SMV7,A0A1I9LPD3 MSH7_ARATH,A0A1I9LPD3_ARATH DNA mismatch repair protein MSH7 (AtMSH7) (MutS protein homolog 7),MUTS homolog 7 FUNCTION: Component of the post-replicative DNA mismatch repair system (MMR). Forms the heterodimer MutS gamma (MSH2-MSH7 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. MutS gamma recognizes specifically the T/G single base mismatch, but not trinucleotide insertion-deletion loops (IDL). {ECO:0000269|PubMed:10852942, ECO:0000269|PubMed:14530450}. 122270,96137 DNA mismatch repair protein MSH7 (AtMSH7) (MutS protein homolog 7),MUTS homolog 7 mismatch repair complex [GO:0032300]; nucleus [GO:0005634]; ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA-dependent ATPase activity [GO:0008094]; heteroduplex DNA loop binding [GO:0000404]; maintenance of DNA repeat elements [GO:0043570]; mismatch repair [GO:0006298],ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] locus:1005716529; AT3G24495 DNA mismatch repair protein Os01g0180600 protein (Putative DNA mismatch repair protein) Q5VR41 Q5VR41_ORYSJ Os01g0180600 OJ1174_D05.15 OSNPB_010180600 P0666G04.3 ENOG411DZR1 MED24.12 Q9LZC5,Q9FFC6,Q0WPI9,Q9FFN0,A0A1P8BG41 GDL73_ARATH,GDL78_ARATH,GDL59_ARATH,GDL72_ARATH,A0A1P8BG41_ARATH GDSL esterase/lipase At5g03820 (EC 3.1.1.-) (Extracellular lipase At5g03820),GDSL esterase/lipase At5g22810 (EC 3.1.1.-) (Extracellular lipase At5g22810),GDSL esterase/lipase At3g53100 (EC 3.1.1.-) (Extracellular lipase At3g53100),GDSL esterase/lipase At5g03810 (EC 3.1.1.-) (Extracellular lipase At5g03810),GDSL-like Lipase/Acylhydrolase family protein ARA:AT5G03820-MONOMER;,ARA:AT5G22810-MONOMER;,ARA:AT3G53100-MONOMER;,ARA:AT5G03810-MONOMER; 3.1.1.- 38544,39540,38692,38355,42386 GDSL esterase/lipase At5g03820 (EC 3.1.1.-) (Extracellular lipase At5g03820),GDSL esterase/lipase At5g22810 (EC 3.1.1.-) (Extracellular lipase At5g22810),GDSL esterase/lipase At3g53100 (EC 3.1.1.-) (Extracellular lipase At3g53100),GDSL esterase/lipase At5g03810 (EC 3.1.1.-) (Extracellular lipase At5g03810),GDSL-like Lipase/Acylhydrolase family protein extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],integral component of membrane [GO:0016021]; lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] locus:2150565;,locus:2101978;,locus:2150555; AT5G03820,AT5G22810,AT3G53100,AT5G03810 GDSL esterase lipase GDSL-like Lipase/Acylhydrolase family protein, expressed (Os03g0683800 protein) (Putative proline-rich protein) (cDNA clone:J023013F22, full insert sequence) Q7Y007 Q7Y007_ORYSJ OSJNBb0070O09.18 LOC_Os03g47940 Os03g0683800 OSJNBb0072E24.7 OSNPB_030683800 ENOG411DZR2 VAMP727 Q9M376 VA727_ARATH Vesicle-associated membrane protein 727 (AtVAMP727) Embryo lethal.Mutant embryos look normal.,Double mutant enhances the effect of SYP22 single mutant. Increased leaf serration and dwarfism. FUNCTION: Involved in the targeting and/or fusion of transport vesicles to their target membrane. {ECO:0000250}. 27460 Vesicle-associated membrane protein 727 (AtVAMP727) early endosome membrane [GO:0031901]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein targeting to vacuole [GO:0006623]; vacuole organization [GO:0007033]; vesicle fusion [GO:0006906] TISSUE SPECIFICITY: Highly expressed in flowers. Detected in leaves, stems and roots. {ECO:0000269|PubMed:15342965}. locus:2080340; AT3G54300 vesicle-associated membrane protein Os08g0558600 protein (Putative vesicle-associated membrane protein 725 (AtVAMP725)) (cDNA clone:001-040-A08, full insert sequence) (cDNA clone:J013089D14, full insert sequence) Q6YZI8 Q6YZI8_ORYSJ Os08g0558600 Os08g0558600 OSNPB_080558600 P0562A06.8 ENOG411DZR3 PER16,PER45 Q96518,Q96522 PER16_ARATH,PER45_ARATH Peroxidase 16 (Atperox P16) (EC 1.11.1.7) (ATP22a),Peroxidase 45 (Atperox P45) (EC 1.11.1.7) (ATP8a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G18980-MONOMER;,ARA:AT4G30170-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35832,35829 Peroxidase 16 (Atperox P16) (EC 1.11.1.7) (ATP22a),Peroxidase 45 (Atperox P45) (EC 1.11.1.7) (ATP8a) extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in the whole plant, but preferentially in roots and leaves. {ECO:0000269|Ref.6}.,TISSUE SPECIFICITY: Slightly expressed in roots. {ECO:0000269|Ref.7}. locus:2044485;,locus:2128921; AT2G18980,AT4G30170 peroxidase NA NA NA NA NA NA NA ENOG411DZR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0562400 protein (Fragment) Q0E0C2 Q0E0C2_ORYSJ Os02g0562400 Os02g0562400 OSNPB_020562400 ENOG411DZR6 F3L24.32 Q58FW4,Q9SR21 Q58FW4_ARATH,Q9SR21_ARATH Peptide transporter family protein,F3L24.32 protein (Peptide transporter family protein) 33479,26949 Peptide transporter family protein,F3L24.32 protein (Peptide transporter family protein) locus:2083609; AT3G09430 NA Os07g0695700 protein A0A0P0XAU2 A0A0P0XAU2_ORYSJ Os07g0695700 OSNPB_070695700 ENOG411DZR7 CYP71B13,CYP71B11,CYP71B37,CYP71B10,CYP71B14,CYP71B36,CYP71B12,CYP71B35,CYP71B2,CYP71B9,CYP71B26,CYP71B34 P58050,P58049,Q9LIP3,Q9LVD2,P58051,Q9LIP4,Q9ZU07,Q9LIP5,O65788,O64718,Q9LTL0,Q9LIP6,A0A1I9LRI3 C71BD_ARATH,C71BB_ARATH,C71BY_ARATH,C71BA_ARATH,C71BE_ARATH,C71BX_ARATH,C71BC_ARATH,C71BW_ARATH,C71B2_ARATH,C71B9_ARATH,C71BQ_ARATH,C71BV_ARATH,A0A1I9LRI3_ARATH Cytochrome P450 71B13 (EC 1.14.-.-),Cytochrome P450 71B11 (EC 1.14.-.-),Cytochrome P450 71B37 (EC 1.14.-.-),Cytochrome P450 71B10 (EC 1.14.-.-),Cytochrome P450 71B14 (EC 1.14.-.-),Cytochrome P450 71B36 (EC 1.14.-.-),Cytochrome P450 71B12 (EC 1.14.-.-),Cytochrome P450 71B35 (EC 1.14.-.-),Cytochrome P450 71B2 (EC 1.14.-.-),Cytochrome P450 71B9 (EC 1.14.-.-),Cytochrome P450 71B26 (EC 1.14.-.-),Cytochrome P450 71B34 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 26 ARA:AT5G25140-MONOMER;,ARA:AT5G25120-MONOMER;,ARA:AT3G26330-MONOMER;,ARA:AT5G57260-MONOMER;,ARA:AT5G25180-MONOMER;,ARA:AT3G26320-MONOMER;,ARA:AT5G25130-MONOMER;,ARA:AT3G26310-MONOMER;,ARA:AT1G13080-MONOMER;,ARA:AT2G02580-MONOMER;,ARA:AT3G26290-MONOMER;,ARA:AT3G26300-MONOMER; 1.14.-.- 56390,56899,56843,57505,56900,57200,56732,57322,57140,57084,57080,57139,58589 Cytochrome P450 71B13 (EC 1.14.-.-),Cytochrome P450 71B11 (EC 1.14.-.-),Cytochrome P450 71B37 (EC 1.14.-.-),Cytochrome P450 71B10 (EC 1.14.-.-),Cytochrome P450 71B14 (EC 1.14.-.-),Cytochrome P450 71B36 (EC 1.14.-.-),Cytochrome P450 71B12 (EC 1.14.-.-),Cytochrome P450 71B35 (EC 1.14.-.-),Cytochrome P450 71B2 (EC 1.14.-.-),Cytochrome P450 71B9 (EC 1.14.-.-),Cytochrome P450 71B26 (EC 1.14.-.-),Cytochrome P450 71B34 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 26 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; heat acclimation [GO:0010286]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] DEVELOPMENTAL STAGE: Constant expression level found in 3-12 week old leaves. Expression levels decrease during the light period, then increase again during dark. After wounding, expression levels decrease. {ECO:0000269|PubMed:9620263}. TISSUE SPECIFICITY: Expressed in root, leaf and influorescence stem of 3-4 week plants. {ECO:0000269|PubMed:9620263}. locus:2179290;,locus:2179270;,locus:2079316;,locus:2165595;,locus:2146980;,locus:2079311;,locus:2179280;,locus:2079306;,locus:2031900;,locus:2065254;,locus:2093561;,locus:2079251; AT5G25140,AT5G25120,AT3G26330,AT5G57260,AT5G25180,AT3G26320,AT5G25130,AT3G26310,AT1G13080,AT2G02580,AT3G26290,AT3G26300 cytochrome P450 Cytochrome P450 71E1, putative (Os12g0512800 protein) (cDNA, clone: J100090N22, full insert sequence),Os07g0292100 protein Q2QPY6,A0A0P0X5B5 Q2QPY6_ORYSJ,A0A0P0X5B5_ORYSJ Os12g0512800 LOC_Os12g32850 OsJ_36270 OSNPB_120512800,Os07g0292100 OSNPB_070292100 ENOG411E2I9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Magnesium chelatase subunit ChlI NA NA NA NA NA NA NA ENOG411E2IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NADH-dependent oxidoreductase 2, putative, expressed (Os10g0113900 protein) (cDNA clone:001-047-B12, full insert sequence) (cDNA clone:J013151D08, full insert sequence),NADH-dependent oxidoreductase 2, putative, expressed (Os10g0114300 protein) (Putative NADPH-dependent oxidoreductase) (cDNA clone:001-113-H10, full insert sequence),Os10g0113900 protein,Os10g0113723 protein Q33BE8,Q7G767,A0A0P0XRH7,A0A0P0XQZ4 Q33BE8_ORYSJ,Q7G767_ORYSJ,A0A0P0XRH7_ORYSJ,A0A0P0XQZ4_ORYSJ Os10g0113900 LOC_Os10g02480 Os10g0113900 OSNPB_100113900,OJ1014H12.4 OSJNBa0092N12.13 LOC_Os10g02490 Os10g0114300 OSNPB_100114300,Os10g0113900 OSNPB_100113900,Os10g0113723 OSNPB_100113723 ENOG411E613 FTRA2 Q8LBP6,A0A1P8BDN6 Q8LBP6_ARATH,A0A1P8BDN6_ARATH At5g08410 (Ferredoxin/thioredoxin reductase subunit A (Variable subunit) 2) (Putative lipoic acid synthase),Ferredoxin/thioredoxin reductase subunit A (Variable subunit) 2 20146,22598 At5g08410 (Ferredoxin/thioredoxin reductase subunit A (Variable subunit) 2) (Putative lipoic acid synthase),Ferredoxin/thioredoxin reductase subunit A (Variable subunit) 2 chloroplast [GO:0009507]; lipoate synthase activity [GO:0016992]; lipoate biosynthetic process [GO:0009107]; photosynthesis [GO:0015979]; protein lipoylation [GO:0009249],photosynthesis [GO:0015979] locus:2150808; AT5G08410 Ferredoxin thioredoxin reductase variable alpha chain NA NA NA NA NA NA NA ENOG411EF7T AtXYP14 Q9LJ88,Q2PE59 Q9LJ88_ARATH,Q2PE59_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Protease inhibitor/seed storage/lipid transfer protein family protein) (Xylogen like protein 14) 14021,16773 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Protease inhibitor/seed storage/lipid transfer protein family protein) (Xylogen like protein 14) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; peptidase activity [GO:0008233]; lipid transport [GO:0006869] locus:2077066;,locus:505006466; AT3G22580,AT4G14815 Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411E50P F23C21.1 Q9C529 Q9C529_ARATH Maternal effect embryo arrest 9 (Uncharacterized protein F23C21.1) (Uncharacterized protein T7P1.2) 16774 Maternal effect embryo arrest 9 (Uncharacterized protein F23C21.1) (Uncharacterized protein T7P1.2) plasma membrane [GO:0005886]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555] locus:2206041; AT1G60870 NA NA NA NA NA NA NA NA ENOG411EF7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein B4 PRA1 family protein (Fragment) Q0JI34 Q0JI34_ORYSJ Os01g0827400 Os01g0827400 OSNPB_010827400 FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000256|RuleBase:RU363107}. ENOG411E50N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Potassium voltage-gated channel subfamily H (Eag-related) member NA NA NA NA NA NA NA ENOG411EHCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCP Q58FY9 Q58FY9_ARATH Cystatin/monellin superfamily protein 20295 Cystatin/monellin superfamily protein cysteine-type endopeptidase inhibitor activity [GO:0004869] locus:504956025; AT2G37435 NA NA NA NA NA NA NA NA ENOG411EHCQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gamma-thionin family NA NA NA NA NA NA NA ENOG411EHCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0286200 protein) (cDNA clone:J023040D23, full insert sequence) Q2QTR0 Q2QTR0_ORYSJ LOC_Os12g18810 Os12g0286200 OSNPB_120286200 ENOG411EHCY Q3E715 DF301_ARATH Defensin-like protein 301 10401 Defensin-like protein 301 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1006230523; AT5G04045 NA NA NA NA NA NA NA NA ENOG411EHCB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Meiotic recombination protein SPO11 NA NA NA NA NA NA NA ENOG411EHCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EHCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Yippee NA NA NA NA NA NA NA ENOG411EHCN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411EHCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor NA NA NA NA NA NA NA ENOG411EF7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHC2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHC0 F4JVT8 F4JVT8_ARATH Uncharacterized protein 16981 Uncharacterized protein locus:2116287; AT4G26960 NA NA NA NA NA NA NA NA ENOG411EHC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E506 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EIKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRMN Q9LYA5 Q9LYA5_ARATH Thioredoxin superfamily protein (Uncharacterized protein At5g14240) (Uncharacterized protein F18O22_30) 28749 Thioredoxin superfamily protein (Uncharacterized protein At5g14240) (Uncharacterized protein F18O22_30) cytoplasm [GO:0005737]; queuosine biosynthetic process [GO:0008616] locus:2145623; AT5G14240 Phosducin Os01g0184800 protein (Putative phosducin-like 3) (cDNA clone:J033028G17, full insert sequence) (cDNA clone:J033096N05, full insert sequence) Q9LGR1 Q9LGR1_ORYSJ Os01g0184800 OsJ_00663 OSNPB_010184800 P0510F03.9 ENOG411EFXN O50062,A0A1P8AX64,F4IUT4 O50062_ARATH,A0A1P8AX64_ARATH,F4IUT4_ARATH Ubiquitin-associated (UBA) protein (Uncharacterized protein At2g33010),Ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein 72211,41197,56613 Ubiquitin-associated (UBA) protein (Uncharacterized protein At2g33010),Ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein locus:2046530;,locus:2046540; AT2G33010,AT2G33000 Ubiquitin-associated (UBA) TS-N domain-containing NA NA NA NA NA NA NA ENOG411EFX0 O22181 O22181_ARATH At2g23270 (Expressed protein) (Transmembrane protein) 9191 At2g23270 (Expressed protein) (Transmembrane protein) integral component of membrane [GO:0016021]; cellular response to hypoxia [GO:0071456] locus:2058652; AT2G23270 NA NA NA NA NA NA NA NA ENOG411E5M9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os07g0290200 protein (cDNA clone:001-104-B03, full insert sequence) Q8GSD8 Q8GSD8_ORYSJ P0438G07.127 B1126F07.119 Os07g0290200 OsJ_23880 OSNPB_070290200 ENOG411E5M8 ERF12 Q94ID6 ERF81_ARATH Ethylene-responsive transcription factor 12 (AtERF12) (Ethylene-responsive element-binding factor 12) (EREBP-12) FUNCTION: Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. 20947 Ethylene-responsive transcription factor 12 (AtERF12) (Ethylene-responsive element-binding factor 12) (EREBP-12) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2032510; AT1G28360 transcription factor NA NA NA NA NA NA NA ENOG411E5M5 MYB27 Q9SCP1,A0A1I9LM30 MYB27_ARATH,A0A1I9LM30_ARATH Transcription factor MYB27 (Myb-related protein 27) (AtMYB27),Myb domain protein 27 27996,24090 Transcription factor MYB27 (Myb-related protein 27) (AtMYB27),Myb domain protein 27 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to absence of light [GO:0009646]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2102013; AT3G53200 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E5M4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA photosystem ii reaction center w NA NA NA NA NA NA NA ENOG411E5M7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Os06g0665200 protein (Fragment) A0A0P0WZM4 A0A0P0WZM4_ORYSJ Os06g0665200 OSNPB_060665200 ENOG411E5M6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR41 (OsRRA14) Q75KW7 ORR41_ORYSJ RR41 Os03g0742300 LOC_Os03g53100 OJ1365_D05.10 OsJ_12520 DISRUPTION PHENOTYPE: Dwarf, narrow leaf and low tillering phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. ENOG411E5M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Casein kinase substrate phosphoprotein PP28 Os05g0515900 protein (cDNA clone:J033026J20, full insert sequence) Q68Y36 Q68Y36_ORYSJ Os05g0515900 OSNPB_050515900 P0022D06.18 ENOG411E5M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RRM Os01g0777400 protein (Os01g0777600 protein) (Fragment) Q0JIU2 Q0JIU2_ORYSJ Os01g0777400 Os01g0777600 Os01g0777400 OSNPB_010777400 OSNPB_010777600 ENOG411E5M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Sodium channel voltage-gated type NA NA NA NA NA NA NA ENOG411E5M2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os03g0660700 protein) Q75GQ2 Q75GQ2_ORYSJ OSJNBb0065L20.11 Os03g0660700 OSNPB_030660700 ENOG411E5MY Q8RX36,A0A1P8AN39 Q8RX36_ARATH,A0A1P8AN39_ARATH RecQ-mediated instability-like protein (Uncharacterized protein At1g08390),RecQ-mediated instability-like protein 15210,9649 RecQ-mediated instability-like protein (Uncharacterized protein At1g08390),RecQ-mediated instability-like protein DNA repair [GO:0006281]; maintenance of rDNA [GO:0043007]; negative regulation of double-strand break repair via homologous recombination [GO:2000042]; pollen development [GO:0009555] locus:2201846; AT1G08390 OB-fold nucleic acid binding domain containing protein OB-fold nucleic acid binding domain containing protein, expressed (Os03g0684300 protein) (cDNA clone:J033095A21, full insert sequence) Q10F22 Q10F22_ORYSJ Os03g0684300 LOC_Os03g47990 Os03g0684300 OsJ_12138 OSJNBb0072E24.14 OSNPB_030684300 ENOG411E5MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NAC transcription factor 14 (Os01g0675800 protein) (OsNAC protein-like),Os09g0295000 protein (OsNAC protein-like) (cDNA clone:002-115-B04, full insert sequence) Q8LQP7,Q69LG1 Q8LQP7_ORYSJ,Q69LG1_ORYSJ NAC14 Os01g0675800 OJ1117_G01.14 OsJ_02991 OSNPB_010675800,Os09g0295000 Os09g0295000 OSJNBa0044K01.19 OSNPB_090295000 ENOG411E5MZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E5MU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5MT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE associated Golgi protein NA NA NA NA NA NA NA ENOG411E5MV CRF6 Q9M374 CRF6_ARATH Ethylene-responsive transcription factor CRF6 (Protein CYTOKININ RESPONSE FACTOR 6) FUNCTION: Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. 35573 Ethylene-responsive transcription factor CRF6 (Protein CYTOKININ RESPONSE FACTOR 6) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; embryo development ending in seed dormancy [GO:0009793]; ethylene-activated signaling pathway [GO:0009873]; leaf development [GO:0048366]; transcription factor import into nucleus [GO:0042991]; transcription, DNA-templated [GO:0006351] locus:2076720; AT3G61630 transcription factor NA NA NA NA NA NA NA ENOG411E5MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0121500 protein (Fragment) A0A0P0UXM1 A0A0P0UXM1_ORYSJ Os01g0121500 OSNPB_010121500 ENOG411E5MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os01g0924966 protein Q5JKG8 Q5JKG8_ORYSJ Os01g0924966 Os01g0924966 B1033B05.21 OSNPB_010924966 ENOG411E5MS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E5MR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0507400 protein (cDNA clone:J013124G10, full insert sequence) Q0J0I6 Q0J0I6_ORYSJ Os09g0507400 Os09g0507400 OSNPB_090507400 ENOG411E5MM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0120900 protein (Os01g0121000 protein) Q5ZEM4 Q5ZEM4_ORYSJ Os01g0121000 Os01g0120900 OSNPB_010121000 P0684C01.6 ENOG411E5MN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family Os12g0624100 protein (Fragment) A0A0P0YD32 A0A0P0YD32_ORYSJ Os12g0624100 OSNPB_120624100 ENOG411E5MI EFL3 Q8S8F5 EF4L3_ARATH Protein ELF4-LIKE 3 FUNCTION: Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. {ECO:0000250}. 12311 Protein ELF4-LIKE 3 nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; positive regulation of circadian rhythm [GO:0042753]; rhythmic process [GO:0048511] locus:505006240; AT2G06255 ELF4-Like Early flowering 4, putative, expressed (Os11g0621500 protein) (cDNA clone:J013132K16, full insert sequence) Q2R122 Q2R122_ORYSJ LOC_Os11g40610 Os11g0621500 OsJ_34677 OSNPB_110621500 ENOG411E5MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5MK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os11g0577650 protein A0A0P0Y3M7 A0A0P0Y3M7_ORYSJ Os11g0577650 OSNPB_110577650 ENOG411E5MJ PCR11 Q9SX24 PCR11_ARATH Protein PLANT CADMIUM RESISTANCE 11 (AtPCR11) FUNCTION: May be involved in heavy metals transport. {ECO:0000250}. 17971 Protein PLANT CADMIUM RESISTANCE 11 (AtPCR11) integral component of membrane [GO:0016021]; pollen sperm cell differentiation [GO:0048235] locus:2026910; AT1G68610 PLAC8 family NA NA NA NA NA NA NA ENOG411E5ME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARF NA NA NA NA NA NA NA ENOG411E5MD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Os04g0123125 protein,Os04g0123600 protein A0A0P0W726,A0A0P0W6B6 A0A0P0W726_ORYSJ,A0A0P0W6B6_ORYSJ Os04g0123125 OSNPB_040123125,Os04g0123600 OSNPB_040123600 ENOG411E5MG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os06g0670633 protein (Fragment),Os12g0490566 protein (Fragment),Os11g0243925 protein (Fragment) A0A0N7KMK5,A0A0P0YAM2,A0A0P0Y0R3 A0A0N7KMK5_ORYSJ,A0A0P0YAM2_ORYSJ,A0A0P0Y0R3_ORYSJ Os06g0670633 OSNPB_060670633,Os12g0490566 OSNPB_120490566,Os11g0243925 OSNPB_110243925 ENOG411E5MF Q8RYC5 Q8RYC5_ARATH Chaperone DnaJ-domain superfamily protein (Expressed protein) 14439 Chaperone DnaJ-domain superfamily protein (Expressed protein) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:505006286; AT2G33735 DnaJ domain NA NA NA NA NA NA NA ENOG411E5MA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0641300 protein Q0IRF0 Q0IRF0_ORYSJ Os11g0641300 OSNPB_110641300 ENOG411E5MC Q93Z84,F4IUA0,A8MR59 Q93Z84_ARATH,F4IUA0_ARATH,A8MR59_ARATH At2g04039/At2g04039 (DUF2996 family protein) (Predicted protein),DUF2996 family protein 21416,18335,22439 At2g04039/At2g04039 (DUF2996 family protein) (Predicted protein),DUF2996 family protein chloroplast [GO:0009507]; thylakoid [GO:0009579] locus:2827471; AT2G04039 Protein of unknown function (DUF2996) Os07g0607800 protein Q6YSF1 Q6YSF1_ORYSJ OSJNBa0072I06.32 Os07g0607800 OSNPB_070607800 ENOG411E5MB PSBR P27202 PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic Marked reduction in steady-state of oxygen evolution. 30% reduction in mutant plants grown under standard light conditions and over 50% reduction when grown under low light.,Mutant plants are not more susceptible to donor-site photoinhibition.,Mutant plants exhibit over two-fold higher PSII excitation pressure compared to wildtype plants.,No observable phenotype under normal (125 ;mol photons/m2/s) high (450 ;mol photons/m2/s) or low (15 or 50 ;mol photons/m2/s) light.,Similar amount of PSI and PSII centers while wildtype plants have less PSI centers. Slightly decreased oxygen evolution in thylakoids; No other phenotypes detected under standard or low light conditions-E. Aro-2006 FUNCTION: Associated with the oxygen-evolving complex of photosystem II. MetaCyc:AT1G79040-MONOMER; 14586 Photosystem II 10 kDa polypeptide, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; photosystem II oxygen evolving complex assembly [GO:0010270]; response to cytokinin [GO:0009735] locus:2207320; AT1G79040 Photosystem II 10 kDa polypeptide Os07g0147500 protein (Putative photosystem II 10 kD polypeptide) (cDNA clone:001-046-C07, full insert sequence),Os07g0147550 protein Q8H4P7,B9FVH9 Q8H4P7_ORYSJ,B9FVH9_ORYSJ OJ1470_H06.117 Os07g0147500 OSNPB_070147500 P0022E03.15,Os07g0147550 OsJ_23089 OSNPB_070147550 ENOG411EIKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling (By similarity) NA NA NA NA NA NA NA ENOG411EHTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0795850 protein A0A0P0VQL2 A0A0P0VQL2_ORYSJ Os02g0795850 OSNPB_020795850 ENOG411EHTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EHTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hypothetical methyltransferase NA NA NA NA NA NA NA ENOG411E2TH Q1PEW0 Q1PEW0_ARATH Uncharacterized protein 26836 Uncharacterized protein locus:2065609; AT2G37880 Protein of unknown function DUF617 NA NA NA NA NA NA NA ENOG411E1Z8 YUP8H12R.32 O64545 O64545_ARATH At1g79060 (TPRXL) (Uncharacterized protein At1g79060) (YUP8H12R.32 protein) 42507 At1g79060 (TPRXL) (Uncharacterized protein At1g79060) (YUP8H12R.32 protein) locus:2207435; AT1G79060 NA Os06g0675200 protein Q651H6 Q651H6_ORYSJ Os06g0675200 Os06g0675200 OsJ_22345 OSNPB_060675200 P0778G11.12 ENOG411E1Z9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBQ Os12g0276300 protein (Fragment) A0A0P0Y8Y3 A0A0P0Y8Y3_ORYSJ Os12g0276300 OSNPB_120276300 ENOG411E1Z4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0210100 protein Q75IK2 Q75IK2_ORYSJ Os05g0210100 Os05g0210100 OSJNBb0016G07.10 OSNPB_050210100 ENOG411E1Z5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pumilio Os09g0371800 protein A0A0P0XMC7 A0A0P0XMC7_ORYSJ Os09g0371800 OSNPB_090371800 ENOG411E1Z6 ABCG21 Q7XA72 AB21G_ARATH ABC transporter G family member 21 (ABC transporter ABCG.21) (AtABCG21) (White-brown complex homolog protein 21) (AtWBC21) 75269 ABC transporter G family member 21 (ABC transporter ABCG.21) (AtABCG21) (White-brown complex homolog protein 21) (AtWBC21) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2102350; AT3G25620 ABC transporter G family member NA NA NA NA NA NA NA ENOG411E1Z7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc Probable protein phosphatase 2C 31 (OsPP2C31) (EC 3.1.3.16) Q10NB9 P2C31_ORYSJ Os03g0275100 LOC_Os03g16760 OsJ_009919 ENOG411E1Z0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (EE)-alpha-farnesene synthase-like NA NA NA NA NA NA NA ENOG411E1Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1637) Expressed protein (Os03g0654700 protein) (cDNA clone:002-127-F03, full insert sequence) Q84SV1 Q84SV1_ORYSJ Os03g0654700 LOC_Os03g45210 Os03g0654700 OsJ_11944 OSJNBa0092N01.26 OSJNBb0023J24.12 OSNPB_030654700 ENOG411E1Z2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0288900 protein (Fragment) A0A0P0VWW7 A0A0P0VWW7_ORYSJ Os03g0288900 OSNPB_030288900 ENOG411E1Z3 SUGTL5,SUGTL2,ESL1 Q8VZT3,Q94KE0,Q7XA64,A8MR75,F4J7A6 EDL12_ARATH,ERDL3_ARATH,ERDL9_ARATH,A8MR75_ARATH,F4J7A6_ARATH Sugar transporter ERD6-like 12 (Sugar transporter-like protein 5),Sugar transporter ERD6-like 3 (Sugar transporter-like protein 2),Sugar transporter ERD6-like 9,ERD (Early response to dehydration) six-like 1,Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 50602,51299,35713,49284,48399 Sugar transporter ERD6-like 12 (Sugar transporter-like protein 5),Sugar transporter ERD6-like 3 (Sugar transporter-like protein 2),Sugar transporter ERD6-like 9,ERD (Early response to dehydration) six-like 1,Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; glucose transmembrane transporter activity [GO:0005355]; monosaccharide transmembrane transporter activity [GO:0015145]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; monosaccharide transport [GO:0015749]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2079802;,locus:2035984;,locus:504955729; AT3G05400,AT1G08920,AT3G05155 sugar transporter NA NA NA NA NA NA NA ENOG411E1ZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Embryogenesis transmembrane protein-like (Os06g0286023 protein),Embryogenesis transmembrane protein-like (Os06g0285941 protein),Os06g0285982 protein Q5VMW0,Q5VMW3,A0A0P0WVB6 Q5VMW0_ORYSJ,Q5VMW3_ORYSJ,A0A0P0WVB6_ORYSJ P0502B12.9 Os06g0286023 OSNPB_060286023,P0502B12.6 Os06g0285941 OSNPB_060285941,Os06g0285982 OSNPB_060285982 ENOG411E1ZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os03g0861800 protein) (cDNA clone:006-211-E04, full insert sequence),F-box domain containing protein, expressed (Os03g0861800 protein) Q10A87,Q10A85 Q10A87_ORYSJ,Q10A85_ORYSJ Os03g0861800 LOC_Os03g64360 OSNPB_030861800,LOC_Os03g64360 Os03g0861800 OSNPB_030861800 ENOG411E1ZH rpl2-A; rpl2-B P56791 RK2_ARATH 50S ribosomal protein L2, chloroplastic 29865 50S ribosomal protein L2, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; transferase activity [GO:0016740]; cytoplasmic translation [GO:0002181] locus:504954483;locus:504954706; ATCG00830ATCG01310; Ribosomal protein L.2 50S ribosomal protein L2, chloroplastic P0C497 RK2_ORYSJ rpl2-A LOC_Osp1g01100 Nip216a; rpl2-B ENOG411E1ZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cell cycle regulated microtubule associated protein Os06g0130200 protein Q658G6 Q658G6_ORYSJ Os06g0130200 Os06g0130200 OSNPB_060130200 P0493C11.2 P0538C01.28 ENOG411E1ZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA reductase NA NA NA NA NA NA NA ENOG411E1ZK ATL11 Q84W40 ATL11_ARATH RING-H2 finger protein ATL11 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL11) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 44629 RING-H2 finger protein ATL11 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL11) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2207026; AT1G72200 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E1ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldehyde dehydrogenase family Os06g0592400 protein (Fragment) Q0DB86 Q0DB86_ORYSJ Os06g0592400 Os06g0592400 OSNPB_060592400 ENOG411E1ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os06g0122200 protein (cDNA clone:002-145-H03, full insert sequence) Q5VQD3 Q5VQD3_ORYSJ Os06g0122200 Os06g0122200 OsJ_19941 OSNPB_060122200 P0542E10.7 ENOG411E1ZF NHL2 Q9SRN1 NHL2_ARATH NDR1/HIN1-like protein 2 FUNCTION: May play a role in plant immunity. {ECO:0000250|UniProtKB:Q9ZVD2}. MISCELLANEOUS: Plants over-expressing NHL2 develop leaf necrotic lesions surrounded by chlorosis. {ECO:0000269|Ref.1}. 26765 NDR1/HIN1-like protein 2 anchored component of plasma membrane [GO:0046658]; chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response to virus [GO:0051607] TISSUE SPECIFICITY: Expressed at low levels in roots, rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14666423}. locus:2098363; AT3G11650 harpin-induced protein 1 domain containing protein expressed OSJNBa0088H09.15 protein (Os04g0685300 protein) (cDNA clone:001-035-C10, full insert sequence) (cDNA clone:J023054G10, full insert sequence) Q7XPU1 Q7XPU1_ORYSJ Os04g0685300 Os04g0685300 OSJNBa0088H09.15 OSNPB_040685300 ENOG411E1ZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411E1ZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1423) NA NA NA NA NA NA NA ENOG411E1ZB Q9STI7 Q9STI7_ARATH Uncharacterized protein AT4g12240 (Uncharacterized protein At4g12240/T4C9_80) (Uncharacterized protein T4C9.80) (Zinc finger (C2H2 type) family protein) 41909 Uncharacterized protein AT4g12240 (Uncharacterized protein At4g12240/T4C9_80) (Uncharacterized protein T4C9.80) (Zinc finger (C2H2 type) family protein) mitochondrion [GO:0005739]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2139119; AT4G12240 Pfam:DUF88 NA NA NA NA NA NA NA ENOG411E1ZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin family Os03g0808400 protein (Putative ubiquitin) (Ubiquitin family protein) Q84M51 Q84M51_ORYSJ Os03g0808400 LOC_Os03g59370 OsJ_13048 OSJNBa0059E14.2 OSJNBa0060M17.5 OSNPB_030808400 ENOG411E1ZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0502100 protein Q0J0Q5 Q0J0Q5_ORYSJ Os09g0502100 Os09g0502100 OSNPB_090502100 ENOG411E1ZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os02g0819000 protein (Fragment) A0A0P0VRA1 A0A0P0VRA1_ORYSJ Os02g0819000 OSNPB_020819000 ENOG411E1ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate-induced protein 1 conserved region NA NA NA NA NA NA NA ENOG411E1ZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411E1ZU O82305 O82305_ARATH At2g25920/F17H15.5 (Expressed protein) (Pollen-specific LRR extensin-like protein) 30665 At2g25920/F17H15.5 (Expressed protein) (Pollen-specific LRR extensin-like protein) locus:2043525; AT2G25920 NA Os05g0156200 protein (cDNA clone:J023099E19, full insert sequence) Q75M09 Q75M09_ORYSJ Os05g0156200 OSNPB_050156200 P0431G05.13 P0676G05.3 ENOG411E1ZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 62 (OsC3H62),Os10g0391300 protein Q338N2,A0A0P0XTN2 C3H62_ORYSJ,A0A0P0XTN2_ORYSJ Os10g0391300 LOC_Os10g25220 OsJ_030157 OsJ_31392 OSJNBb0061I18.1,Os10g0391300 OSNPB_100391300 ENOG411E1ZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1ZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Class-II DAHP synthetase family Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) Q336R7 Q336R7_ORYSJ LOC_Os10g41480 Os10g0564400 OSNPB_100564400 ENOG411E1ZQ rpoA P56762 RPOA_ARATH DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000255|HAMAP-Rule:MF_00059}. Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 2.7.7.6 38137 DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; nucleoid [GO:0009295]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription, DNA-templated [GO:0006351] locus:504954697; ATCG00740 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates NA NA NA NA NA NA NA ENOG411E1ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os10g0566400 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:002-149-F01, full insert sequence) Q336R1 Q336R1_ORYSJ Os10g0566400 LOC_Os10g41660 OSNPB_100566400 ENOG411E1ZS MYB56 Q6R053 MYB56_ARATH Transcription factor MYB56 (Myb-related protein 56) (AtMYB56) (Protein BRASSINOSTEROIDS AT VASCULAR AND ORGANIZING CENTER) DISRUPTION PHENOTYPE: Smaller seeds and embryos associated with smaller contracted endothelial cells and reduced cell number in the outer integument layer of the seed coat during the seed development (PubMed:23911125). Increased quiescent center (QC) cell divisions (PubMed:24981610). Early flowering under long-day (LD) associated with FT accumulation (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. FUNCTION: Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. 36892 Transcription factor MYB56 (Myb-related protein 56) (AtMYB56) (Protein BRASSINOSTEROIDS AT VASCULAR AND ORGANIZING CENTER) cytosol [GO:0005829]; nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein homodimerization activity [GO:0042803]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; cell differentiation [GO:0030154]; cellular response to brassinosteroid stimulus [GO:0071367]; endothelial cell proliferation [GO:0001935]; integument development [GO:0080060]; negative regulation of cell division [GO:0051782]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; positive regulation of transcription, DNA-templated [GO:0045893]; quiescent center organization [GO:1904961]; regulation of seed growth [GO:0080113]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in developing seeds. {ECO:0000269|PubMed:23911125}. TISSUE SPECIFICITY: Mostly expressed in flowers (at protein level) and siliques, and, to a lower extent, in roots, stems and leaves (PubMed:25343985). Expressed in embryos (e.g. heart and torpedo stages) and cotyledons, and, at low levels, in roots and inflorescence (PubMed:23911125). Accumulates specifically in root apical meristem quiescent center (QC) and vascular initial cells (PubMed:16581911, PubMed:24981610). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. locus:2175931; AT5G17800 Transcription factor Transcription factor CSA (Myb-related protein CSA) (Protein CARBON STARVED ANTHER) Q5NBM8 CSA_ORYSJ CSA Os01g0274800 LOC_Os01g16810 P0038F12.1 P0424A08.17 DISRUPTION PHENOTYPE: Reduced plant size, and reduced levels of sugars in anthers leading to defective anthers and male sterility when grown under short day (12 hours light) conditions (PubMed:20305120, PubMed:23256151). No male sterility phenotype when grown under long day (14 hours light) conditions (PubMed:23256151). {ECO:0000269|PubMed:20305120, ECO:0000269|PubMed:23256151}. FUNCTION: Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. ENOG411E2TX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E2TQ AHB1 O24520 HBL1_ARATH Non-symbiotic hemoglobin 1 (ARAth GLB1) (Hb1) FUNCTION: May not function as an oxygen storage or transport protein, but might act as an oxygen sensor or play a role in electron transfer, possibly to a bound oxygen molecule. Has an unusually high affinity for O(2) because of a very low dissociation constant. 18034 Non-symbiotic hemoglobin 1 (ARAth GLB1) (Hb1) cell wall [GO:0005618]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxygen binding [GO:0019825]; response to hypoxia [GO:0001666] TISSUE SPECIFICITY: Expressed in roots and rosette leaves. locus:2052981; AT2G16060 May not function as an oxygen storage or transport protein but might act as an oxygen sensor or play a role in electron transfer possibly to a bound oxygen molecule Non-symbiotic hemoglobin 3 (ORYsa GLB1c) (rHb3),Non-symbiotic hemoglobin 1 (ORYsa GLB1a) (rHb1),Non-symbiotic hemoglobin 2 (ORYsa GLB1b) (rHb2),Non-symbiotic hemoglobin 4 (ORYsa GLB1d) (rHb4) Q94FT8,O04986,O04985,Q94FT7 HBL3_ORYSJ,HBL1_ORYSJ,HBL2_ORYSJ,HBL4_ORYSJ HB3 GLB1C Os03g0234000 LOC_Os03g13150 OJ1175C11.4,HB1 GLB1A Os03g0233900 LOC_Os03g13140 OJ1175C11.5 OsJ_10047,HB2 GLB1B Os03g0226200 LOC_Os03g12510 OsJ_09991 OSJNBa0081P02.19,HB4 GLB1D Os03g0234100 LOC_Os03g13160 OJ1175C11.3 OsJ_10049 FUNCTION: May not function as an oxygen storage or transport protein, but might act as an oxygen sensor or play a role in electron transfer, possibly to a bound oxygen molecule.,FUNCTION: May not function as an oxygen storage or transport protein, but might act as an oxygen sensor or play a role in electron transfer, possibly to a bound oxygen molecule. Has an unusually high affinity for O(2) because of a very low dissociation constant. ENOG411E2TP BIM3 Q9FMB6,A0A1P8BB12 BIM3_ARATH,A0A1P8BB12_ARATH Transcription factor BIM3 (BES1-interacting Myc-like protein 3) (Basic helix-loop-helix protein 141) (AtbHLH141) (bHLH 141) (Transcription factor EN 127) (bHLH transcription factor bHLH141),BES1-interacting Myc-like protein 3 FUNCTION: Positive brassinosteroid-signaling protein. 33950,25391 Transcription factor BIM3 (BES1-interacting Myc-like protein 3) (Basic helix-loop-helix protein 141) (AtbHLH141) (bHLH 141) (Transcription factor EN 127) (bHLH transcription factor bHLH141),BES1-interacting Myc-like protein 3 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] locus:2152262; AT5G38860 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E2TV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0109750 protein C7IXD7 C7IXD7_ORYSJ Os01g0109750 Os01g0109750 OSNPB_010109750 ENOG411E2M4 Q5M751,A0A1P8B1L8 Q5M751_ARATH,A0A1P8B1L8_ARATH At2g01990 (XRI1-like protein),XRI1-like protein 23602,27159 At2g01990 (XRI1-like protein),XRI1-like protein locus:2041110; AT2G01990 NA NA NA NA NA NA NA NA ENOG411E5EQ DAC Q94BY7 Q94BY7_ARATH AT3g17930/MEB5_15 (Transmembrane protein) high chlorophyll fluorescence unable to grow photoautotrophically in soil showed a retarded growth pattern and exhibited pale green leaves 20913 AT3g17930/MEB5_15 (Transmembrane protein) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; cytochrome b6f complex assembly [GO:0010190] locus:2088540; AT3G17930 Protein of unknown function (DUF3007) Os01g0805200 protein Q8LR94 Q8LR94_ORYSJ Os01g0805200 Os01g0805200 OsJ_03796 OSNPB_010805200 P0034E02.54 ENOG411E5ES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0106600 protein (Fragment) A0A0P0XAY3 A0A0P0XAY3_ORYSJ Os08g0106600 OSNPB_080106600 ENOG411E83Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E83W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E83Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: zinc finger protein NA NA NA NA NA NA NA ENOG411E83X MAF19.21 Q9FNQ6 Q9FNQ6_ARATH Gb|AAF19536.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) 72239 Gb|AAF19536.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] locus:2159481; AT5G61090 Inherit from euNOG: Nucleic acid binding NA NA NA NA NA NA NA ENOG411E83Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411E83B LEA41 Q39084 LEA41_ARATH Late embryogenis abundant protein 41 (Protein DROUGHT-INDUCED 21) (AtDI21) 10965 Late embryogenis abundant protein 41 (Protein DROUGHT-INDUCED 21) (AtDI21) mitochondrion [GO:0005739]; cold acclimation [GO:0009631]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to water deprivation [GO:0009414] locus:2129795; AT4G15910 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E83C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E83A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0119900 protein,Os06g0121000 protein Q5VPQ4,Q5VQ92 Q5VPQ4_ORYSJ,Q5VQ92_ORYSJ Os06g0119900 OSJNBa0062J13.48 OSNPB_060119900 P0660D08.17,Os06g0121000 OsJ_19933 OSNPB_060121000 P0660D08.28 ENOG411E83F rpl33 P56796 RK33_ARATH 50S ribosomal protein L33, chloroplastic 7692 50S ribosomal protein L33, chloroplastic chloroplast [GO:0009507]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954687; ATCG00640 Ribosomal protein L33 NA NA NA NA NA NA NA ENOG411E83G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E83D TCP18,BRC1 A1YKT1,A0A1I9LSP1 TCP18_ARATH,A0A1I9LSP1_ARATH Transcription factor TCP18 (Protein BRANCHED 1) (Protein TEOSINTE BRANCHED 1-LIKE 1),TCP family transcription factor FUNCTION: Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. 49676,49654 Transcription factor TCP18 (Protein BRANCHED 1) (Protein TEOSINTE BRANCHED 1-LIKE 1),TCP family transcription factor nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of secondary shoot formation [GO:2000032]; regulation of transcription, DNA-templated [GO:0006355]; secondary shoot formation [GO:0010223]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}. TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. locus:2086929; AT3G18550 TCP family transcription factor NA NA NA NA NA NA NA ENOG411E83E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E83J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0799600 protein Q69QY6 Q69QY6_ORYSJ Os02g0799600 OJ1695_D07.24 OsJ_08743 OSNPB_020799600 ENOG411E83K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thylakoid soluble phosphoprotein TSP9 Os07g0243150 protein (Fragment) A0A0P0X4N7 A0A0P0X4N7_ORYSJ Os07g0243150 OSNPB_070243150 ENOG411E83H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0799200 protein Q69QY8 Q69QY8_ORYSJ Os02g0799200 OJ1695_D07.20 OsJ_08741 OSNPB_020799200 ENOG411E83I F4JIG1 F4JIG1_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 23547 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein anchored component of membrane [GO:0031225] locus:504955426; AT4G14805 NA NA NA NA NA NA NA NA ENOG411E83N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0457700 protein C7J1E2 C7J1E2_ORYSJ Os04g0457700 Os04g0457700 OSNPB_040457700 ENOG411E83M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E832 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E833 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Inhibitor I family protein (Os11g0279750 protein) (Potato inhibitor I family) Q53PR9 Q53PR9_ORYSJ Os11g0279750 LOC_Os11g17790 OsJ_33629 OSNPB_110279750 ENOG411E836 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E837 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1685) NA NA NA NA NA NA NA ENOG411E835 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0131000 protein Q6ZG92 Q6ZG92_ORYSJ Os02g0131000 OJ1007_D04.13 OsJ_05249 OSNPB_020131000 ENOG411E839 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0705400 protein A2ZX08 A2ZX08_ORYSJ Os01g0705400 OsJ_03179 OSNPB_010705400 ENOG411EGG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EGG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os12g0150500 protein (Plastocyanin-like domain containing protein),Os08g0138400 protein (Putative blue copper binding protein) Q2QXN1,Q6ZKI9 Q2QXN1_ORYSJ,Q6ZKI9_ORYSJ Os12g0150500 LOC_Os12g05470 Os12g0150500 OsJ_35236 OSNPB_120150500,Os08g0138400 OJ1119_D01.8 OSNPB_080138400 ENOG411EGG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA polymerases I II and III subunit rpabc3-like NA NA NA NA NA NA NA ENOG411EGG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGG7 Q9LUA5 Q9LUA5_ARATH Uncharacterized protein 18673 Uncharacterized protein locus:2092105; AT3G25870 NA NA NA NA NA NA NA NA ENOG411EGG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0347200 protein (cDNA clone:J013064I01, full insert sequence) Q5Z8C7 Q5Z8C7_ORYSJ Os01g0347200 B1146B04.39 OsJ_01669 OSNPB_010347200 P0440D10.7 ENOG411EGG1 Q6ID69 Q6ID69_ARATH At3g09032 (Josephin-like protein) 16355 At3g09032 (Josephin-like protein) locus:1006230239; AT3G09032 NA NA NA NA NA NA NA NA ENOG411EGG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0711900 protein (Fragment) A0A0P0V7A8 A0A0P0V7A8_ORYSJ Os01g0711900 OSNPB_010711900 ENOG411EGG3 AGAMOUS-like 57 Q9M8W6 Q9M8W6_ARATH AGAMOUS-like 57 (MADS-box family protein) (Putative SRF-type transcription factor) 24098 AGAMOUS-like 57 (MADS-box family protein) (Putative SRF-type transcription factor) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2102990; AT3G04100 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EGG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: PBPb NA NA NA NA NA NA NA ENOG411EGGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EGGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Os05g0154432 protein A0A0P0WI51 A0A0P0WI51_ORYSJ Os05g0154432 OSNPB_050154432 ENOG411EGGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein Os03g0184600 protein A0A0P0VU49 A0A0P0VU49_ORYSJ Os03g0184600 OSNPB_030184600 ENOG411EGGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ethylene-responsive transcription factor 3-like NA NA NA NA NA NA NA ENOG411EGGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EGGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA A20-like zinc finger Zinc finger A20 and AN1 domain-containing stress-associated protein 12 (OsSAP12),Zinc finger A20 domain-containing stress-associated protein 18 (OsSAP18),Os09g0453600 protein Q6Z541,P0C282,A0A0P0XNG8 SAP12_ORYSJ,SAP18_ORYSJ,A0A0P0XNG8_ORYSJ SAP12 Os08g0436400 LOC_Os08g33880 OsJ_27448 OSJNBa0016C11.6,SAP18 Os07g0169100 LOC_Os07g07370,Os09g0453600 OSNPB_090453600 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411EGGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0546000 protein B9FGF3 B9FGF3_ORYSJ Os04g0546000 OsJ_15666 OSNPB_040546000 ENOG411EGGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411EGGH SAUR25 Q9SVN4 Q9SVN4_ARATH At4g13790 (SAUR-AC-like protein (Small auxin up RNA)) (SAUR-like auxin-responsive protein family) 10576 At4g13790 (SAUR-AC-like protein (Small auxin up RNA)) (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733]; response to far red light [GO:0010218]; response to red light [GO:0010114] locus:2119530; AT4G13790 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EGGK PDF1.2B,PDF1.5,PDF1.2C,PDF1.3,PDF1.2A,PDF1.1 O80994,Q9FZ31,Q9FI22,O80995,Q9FI23,P30224 DEF15_ARATH,DEF18_ARATH,DEF17_ARATH,DEF14_ARATH,DEF16_ARATH,DEF13_ARATH Putative defensin-like protein 15 (Putative cysteine-rich antifungal protein At2g26020) (Putative plant defensin 1.2b),Defensin-like protein 18 (Cysteine-rich antifungal protein At1g55010) (Plant defensin 1.5),Defensin-like protein 17 (Plant defensin 1.2c),Defensin-like protein 14 (Cysteine-rich antifungal protein At2g26010) (Plant defensin 1.3),Defensin-like protein 16 (Low-molecular-weight cysteine-rich protein 77) (Protein LCR77) (Plant defensin 1.2) (Plant defensin 1.2a),Defensin-like protein 13 (Anther-specific protein S18 homolog) (Cysteine-rich antifungal protein 1) (AFP1) (Low-molecular-weight cysteine-rich protein 67) (Protein LCR67) (Plant defensin 1.1) FUNCTION: Confers broad-spectrum resistance to pathogens.,FUNCTION: Confers broad-spectrum resistance to pathogens. Has antifungal activity in vitro. {ECO:0000269|PubMed:17180735}.,FUNCTION: Confers broad-spectrum resistance to pathogens. Has antifungal activity in vitro. {ECO:0000269|PubMed:8989885}.,FUNCTION: Confers broad-spectrum resistance to pathogens. Possesses antifungal activity sensitive to inorganic cations in vitro. {ECO:0000269|PubMed:17180735, ECO:0000269|PubMed:8422949}. 8640,9139,8550,8580,8518,8709 Putative defensin-like protein 15 (Putative cysteine-rich antifungal protein At2g26020) (Putative plant defensin 1.2b),Defensin-like protein 18 (Cysteine-rich antifungal protein At1g55010) (Plant defensin 1.5),Defensin-like protein 17 (Plant defensin 1.2c),Defensin-like protein 14 (Cysteine-rich antifungal protein At2g26010) (Plant defensin 1.3),Defensin-like protein 16 (Low-molecular-weight cysteine-rich protein 77) (Protein LCR77) (Plant defensin 1.2) (Plant defensin 1.2a),Defensin-like protein 13 (Anther-specific protein S18 homolog) (Cysteine-rich antifungal protein 1) (AFP1) (Low-molecular-weight cysteine-rich protein 67) (Protein LCR67) (Plant defensin 1.1) extracellular region [GO:0005576]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],extracellular region [GO:0005576]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; killing of cells of other organism [GO:0031640]; response to ethylene [GO:0009723]; response to insect [GO:0009625]; response to jasmonic acid [GO:0009753] TISSUE SPECIFICITY: Predominantly expressed in leaves. {ECO:0000269|PubMed:8989885, ECO:0000269|PubMed:9001391}.,TISSUE SPECIFICITY: Expressed predominantly in siliques and dry seeds. {ECO:0000269|PubMed:8989885}. locus:2057437;,locus:2011055;,locus:2163431;,locus:2057448;,locus:2163421;,locus:2204365; AT2G26020,AT1G55010,AT5G44430,AT2G26010,AT5G44420,AT1G75830 plant defensin NA NA NA NA NA NA NA ENOG411EGGJ O04254 O04254_ARATH At4g02140 (Uncharacterized protein AT4g02140) (Uncharacterized protein T10M13.15) 12117 At4g02140 (Uncharacterized protein AT4g02140) (Uncharacterized protein T10M13.15) locus:2132228; AT4G02140 NA NA NA NA NA NA NA NA ENOG411EGGE MQD22.2,extA Q9FJS1,Q39100 Q9FJS1_ARATH,Q39100_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Extensin-like protein) (Putative extensin),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (ExtA) (ExtA protein) 13407,13373 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Extensin-like protein) (Putative extensin),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (ExtA) (ExtA protein) locus:2170962;,locus:2170972; AT5G46890,AT5G46900 Protease inhibitor seed storage lipid transfer protein (LTP) family protein NA NA NA NA NA NA NA ENOG411EGGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SWIM zinc finger NA NA NA NA NA NA NA ENOG411EGGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF3424 NA NA NA NA NA NA NA ENOG411EE35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CDC48_2 NA NA NA NA NA NA NA ENOG411EE33 Q8RWY0 Q8RWY0_ARATH Lipase, putative (DUF620) (Putative lipase) 48017 Lipase, putative (DUF620) (Putative lipase) locus:2199191; AT1G27690 Protein of unknown function (DUF620) NA NA NA NA NA NA NA ENOG411EE32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SET NA NA NA NA NA NA NA ENOG411EE3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EE3V O49315 FB123_ARATH Putative F-box protein At2g33200 43832 Putative F-box protein At2g33200 locus:2046480; AT2G33200 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EE3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411EE3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3490) Putative inactive kinesin-like protein KIN-7B (Fragment),Kinesin-like protein KIN-7C Q6H647,Q6H638 KN7B_ORYSJ,KN7C_ORYSJ KIN7B Os02g0644400 LOC_Os02g43050 OJ1282_H11.24 OsJ_07707 P0030D07.2,KIN7C Os02g0645100 LOC_Os02g43130 OsJ_07710 P0030D07.15 ENOG411EE3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411EE3Z HSFA7B Q9M1V5 HFA7B_ARATH Heat stress transcription factor A-7b (AtHsfA7b) (AtHsf-10) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 32624 Heat stress transcription factor A-7b (AtHsfA7b) (AtHsf-10) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; transcription, DNA-templated [GO:0006351] locus:2077249; AT3G63350 HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411EE3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase S28 NA NA NA NA NA NA NA ENOG411EE3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sigma-54 interaction domain Chaperone protein ClpC4, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 4) (Casein lytic proteinase C4),Chaperone protein ClpC3, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog 3) (Casein lytic proteinase C3) Q53N47,Q53LY0 CLPC4_ORYSJ,CLPC3_ORYSJ CPLC4 Os11g0269000 LOC_Os11g16770,CLPC3 Os11g0267400 LOC_Os11g16590 FUNCTION: Molecular chaperone that may interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast. {ECO:0000250}. ENOG411EE3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NA NA NA NA NA NA NA ENOG411EE3M Q9LZW0 Q9LZW0_ARATH C2H2 and C2HC zinc fingers superfamily protein (Putative zinc finger protein) 24053 C2H2 and C2HC zinc fingers superfamily protein (Putative zinc finger protein) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2181007; AT5G01860 zinc finger NA NA NA NA NA NA NA ENOG411EE3H BHLH69,BHLH66,LRL2 Q8S3D5,Q9ZUG9,A0A1P8B7F0 BH069_ARATH,BH066_ARATH,A0A1P8B7F0_ARATH Transcription factor bHLH69 (Basic helix-loop-helix protein 69) (AtbHLH69) (bHLH 69) (Transcription factor EN 94) (bHLH transcription factor bHLH069),Transcription factor bHLH66 (Basic helix-loop-helix protein 66) (AtbHLH66) (bHLH 66) (Transcription factor EN 95) (bHLH transcription factor bHLH066),LJRHL1-like 2 32880,36522,38582 Transcription factor bHLH69 (Basic helix-loop-helix protein 69) (AtbHLH69) (bHLH 69) (Transcription factor EN 94) (bHLH transcription factor bHLH069),Transcription factor bHLH66 (Basic helix-loop-helix protein 66) (AtbHLH66) (bHLH 66) (Transcription factor EN 95) (bHLH transcription factor bHLH066),LJRHL1-like 2 nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; root hair cell development [GO:0080147]; root hair cell differentiation [GO:0048765]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; root hair cell development [GO:0080147]; root hair cell differentiation [GO:0048765]; root hair elongation [GO:0048767]; transcription from RNA polymerase II promoter [GO:0006366],protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2126624;,locus:2047555; AT4G30980,AT2G24260 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411DTCU TIP1-3 O82598 TIP13_ARATH Aquaporin TIP1-3 (Gamma-tonoplast intrinsic protein 3) (Gamma-TIP3) (Tonoplast intrinsic protein 1-3) (AtTIP1;3) Short pollen tubes under nitrogen starvation-J. Muschietti-2010 FUNCTION: Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. R-ATH-432047; 25914 Aquaporin TIP1-3 (Gamma-tonoplast intrinsic protein 3) (Gamma-TIP3) (Tonoplast intrinsic protein 1-3) (AtTIP1;3) central vacuole [GO:0042807]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; urea transmembrane transporter activity [GO:0015204]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; urea transport [GO:0015840]; water transport [GO:0006833] locus:2116987; AT4G01470 Aquaporin Probable aquaporin TIP1-2 (Tonoplast intrinsic protein 1-2) (OsTIP1;2) Q94CS9 TIP12_ORYSJ TIP1-2 TIP1 Os01g0975900 LOC_Os01g74450 OsJ_004842 P0459B04.30 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DTCT FC2,FC1 O04921,P42043,F4IMT3 HEMH2_ARATH,HEMH1_ARATH,F4IMT3_ARATH Ferrochelatase-2, chloroplastic (AtFC2) (EC 4.99.1.1) (Ferrochelatase-II) (AtFC-II) (Heme synthase 2) (Protoheme ferro-lyase 2),Ferrochelatase-1, chloroplastic/mitochondrial (AtFC1) (EC 4.99.1.1) (Ferrochelatase-I) (AtFC-I) (Heme synthase 1) (Protoheme ferro-lyase 1),Ferrochelatase (EC 4.99.1.1) DISRUPTION PHENOTYPE: Abnormal, small, and pale green rosette leaves (PubMed:24329537, PubMed:26494759). Low contents in chlorophylls, carotenoids and photosynthetic proteins in leaves. Impaired photosynthetic performance. Increased resistance to salt and flagellin treatment (PubMed:24329537). Increased sensitivity to de-etiolation (PubMed:26494759). {ECO:0000269|PubMed:24329537, ECO:0000269|PubMed:26494759}.,DISRUPTION PHENOTYPE: No visible phenotype, but decreased heme content in roots. {ECO:0000269|PubMed:17416636}. no visible phenotype. decreased heme contents in roots Low heme levels in roots-T. Matsuda-2007 FUNCTION: Catalyzes the last step of heme biosynthesis by inserting ferrous iron into protoporphyrin IX to produce protoheme. Produces heme for photosynthetic cytochromes, and for proteins involved in abiotic and biotic stress responses (PubMed:24329537). May play a role in the quality control of individual chloroplasts during photo-oxidative stress through regulation of heme biosynthesis (PubMed:26494759). {ECO:0000269|PubMed:24329537, ECO:0000269|PubMed:26494759}.,FUNCTION: Catalyzes the last step of heme biosynthesis by inserting ferrous iron into protoporphyrin IX to produce protoheme (PubMed:17416636, PubMed:24329537). Produces heme for photosynthetic cytochromes, but does not seem to be involved in stress responses (PubMed:24329537). May be involved in wound-induced supply of heme to defensive hemoproteins outside plastids (PubMed:17416636). Regulates the expression of photosynthesis-associated nuclear genes in undevelopped chloroplasts through production of heme (PubMed:21565502). {ECO:0000269|PubMed:17416636, ECO:0000269|PubMed:21565502, ECO:0000269|PubMed:24329537}.,FUNCTION: Catalyzes the ferrous insertion into protoporphyrin IX. {ECO:0000256|RuleBase:RU000607}. PATHWAY: Porphyrin-containing compound metabolism; protoheme biosynthesis; protoheme from protoporphyrin-IX: step 1/1. {ECO:0000305}.,PATHWAY: Porphyrin-containing compound metabolism; protoheme biosynthesis; protoheme from protoporphyrin-IX: step 1/1. {ECO:0000256|RuleBase:RU000607}. ARA:AT2G30390-MONOMER;,ARA:AT5G26030-MONOMER; R-ATH-189451; 4.99.1.1; 4.99.1.1 56619,52033,57860 Ferrochelatase-2, chloroplastic (AtFC2) (EC 4.99.1.1) (Ferrochelatase-II) (AtFC-II) (Heme synthase 2) (Protoheme ferro-lyase 2),Ferrochelatase-1, chloroplastic/mitochondrial (AtFC1) (EC 4.99.1.1) (Ferrochelatase-I) (AtFC-I) (Heme synthase 1) (Protoheme ferro-lyase 1),Ferrochelatase (EC 4.99.1.1) chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; mitochondrion [GO:0005739]; plastid thylakoid membrane [GO:0055035]; ferrochelatase activity [GO:0004325]; heme biosynthetic process [GO:0006783]; porphyrin-containing compound biosynthetic process [GO:0006779]; tetrapyrrole biosynthetic process [GO:0033014],chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; mitochondrion [GO:0005739]; plastid [GO:0009536]; ferrochelatase activity [GO:0004325]; heme biosynthetic process [GO:0006783]; response to oxidative stress [GO:0006979]; tetrapyrrole biosynthetic process [GO:0033014],chloroplast [GO:0009507]; ferrochelatase activity [GO:0004325]; heme biosynthetic process [GO:0006783] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:12374307}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (PubMed:12374307). Present in both leaves and roots (PubMed:17416636). {ECO:0000269|PubMed:12374307, ECO:0000269|PubMed:17416636}. locus:2180642;,locus:2064397; AT2G30390,AT5G26030 Catalyzes the ferrous insertion into protoporphyrin IX (By similarity) Ferrochelatase-2, chloroplastic (EC 4.99.1.1) (Ferrochelatase II) (Heme synthase 2) (Protoheme ferro-lyase 2),Ferrochelatase-1, chloroplastic (EC 4.99.1.1) (Ferrochelatase I) (Heme synthase 1) (Protoheme ferro-lyase 1),Ferrochelatase (EC 4.99.1.1) (Fragment),Os05g0361200 protein (Fragment) Q0DIV0,Q69TB1,A0A0P0XK63,A0A0N7KKM2,A0A0P0WLC1 HEMH2_ORYSJ,HEMH1_ORYSJ,A0A0P0XK63_ORYSJ,A0A0N7KKM2_ORYSJ,A0A0P0WLC1_ORYSJ Os05g0361200 LOC_Os05g29760 P0530H10.9 P0692D12.2,Os09g0297000 LOC_Os09g12560 P0592C05.24,Os09g0297000 OSNPB_090297000,Os05g0361200 OSNPB_050361200 FUNCTION: Catalyzes the ferrous insertion into protoporphyrin IX.,FUNCTION: Catalyzes the ferrous insertion into protoporphyrin IX. {ECO:0000256|RuleBase:RU000607}. ENOG411DTCW hus1 Q709F6 Q709F6_ARATH Hus1 protein (Hus1-like protein) 35567 Hus1 protein (Hus1-like protein) checkpoint clamp complex [GO:0030896]; nucleolus [GO:0005730]; site of double-strand break [GO:0035861]; double-strand break repair via homologous recombination [GO:0000724]; intra-S DNA damage checkpoint [GO:0031573]; meiotic DNA integrity checkpoint [GO:0044778]; mitotic DNA replication checkpoint [GO:0033314]; nucleotide-excision repair [GO:0006289] locus:2035129; AT1G52530 Checkpoint protein OSJNBa0074L08.4 protein (Os04g0528400 protein) Q7XS44 Q7XS44_ORYSJ Os04g0528400 Os04g0528400 OSJNBa0074L08.4 OSNPB_040528400 ENOG411DTCV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDP-fucose protein O-fucosyltransferase Os06g0284200 protein (Putative auxin-independent growth promoter) (cDNA clone:J023061C04, full insert sequence),Os02g0726500 protein (Putative auxin-independent growth promoter) (cDNA, clone: J090078J21, full insert sequence) Q5VNG4,Q6Z341 Q5VNG4_ORYSJ,Q6Z341_ORYSJ Os06g0284200 OSNPB_060284200 P0491D10.16,Os02g0726500 B1121A12.18 OSNPB_020726500 ENOG411DTCQ UGT85A2,UGT85A7,UGT85A5 Q9ZWJ3,Q9LME8,Q9LMF0,F4I1C6 U85A2_ARATH,U85A7_ARATH,U85A5_ARATH,F4I1C6_ARATH UDP-glycosyltransferase 85A2 (EC 2.4.1.-),UDP-glycosyltransferase 85A7 (EC 2.4.1.-),UDP-glycosyltransferase 85A5 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) ARA:AT1G22360-MONOMER;,ARA:AT1G22340-MONOMER;,ARA:AT1G22370-MONOMER; 2.4.1.- 54364,55456,53970,52940 UDP-glycosyltransferase 85A2 (EC 2.4.1.-),UDP-glycosyltransferase 85A7 (EC 2.4.1.-),UDP-glycosyltransferase 85A5 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; glucuronosyltransferase activity [GO:0015020]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in roots, shoots, leaves and flowers. {ECO:0000269|PubMed:17498920}.,TISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:17498920}. locus:2196501;,locus:2196516;,locus:2196496; AT1G22360,AT1G22340,AT1G22370 UDP-Glycosyltransferase Glycosyltransferase (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) (Fragment) Q6Z689,A0A0P0VPM6,A0A0P0VQ06 Q6Z689_ORYSJ,A0A0P0VPM6_ORYSJ,A0A0P0VQ06_ORYSJ Os02g0755500 OsJ_08434 OSNPB_020755500 P0627E03.26,Os02g0755900 OSNPB_020755900,Os02g0755600 OSNPB_020755600 ENOG411DTCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 NA NA NA NA NA NA NA ENOG411DTCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Expressed protein (Os11g0161100 protein) (cDNA clone:J013000P18, full insert sequence),NB-ARC domain containing protein (NB-ARC domain, putative) (Os11g0160800 protein) (Os11g0160900 protein),Os11g0161133 protein (Fragment),Os11g0161000 protein (Fragment),Os11g0160800 protein Q2RA83,Q53PM4,A0A0P0XZ14,A0A0P0XZ36,A0A0P0XZG9 Q2RA83_ORYSJ,Q53PM4_ORYSJ,A0A0P0XZ14_ORYSJ,A0A0P0XZ36_ORYSJ,A0A0P0XZG9_ORYSJ Os11g0161100 LOC_Os11g06230 Os11g0161100 OSNPB_110161100,Os11g0160900 LOC_Os11g06210 Os11g0160800 OSNPB_110160900,Os11g0161133 OSNPB_110161133,Os11g0161000 OSNPB_110161000,Os11g0160800 OSNPB_110160800 ENOG411DTCR POT2 O22881 POT2_ARATH Potassium transporter 2 (AtKT2) (AtKUP2) (AtPOT2) DISRUPTION PHENOTYPE: Plants display a short hypocotyl phenotype. Kup2-2, kup2-3 and kup2-7 are considered as null mutants. {ECO:0000269|PubMed:11826303}. FUNCTION: Low-affinity potassium transporter. Could mediate the potassium-dependent cell expansion in growing tissues. {ECO:0000269|PubMed:11826303}. 88630 Potassium transporter 2 (AtKT2) (AtKUP2) (AtPOT2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079] DEVELOPMENTAL STAGE: Localized to cotyledons and hypocotyl in the early stages of development, and later appears in young leaves. {ECO:0000269|PubMed:11826303}. TISSUE SPECIFICITY: Slightly detected in roots, stems, leaves and flowers of mature plants and in potassium-starved plants. {ECO:0000269|PubMed:9477571}. locus:2061838; AT2G40540 potassium transporter Probable potassium transporter 9 (OsHAK9),Putative potassium transporter 8 (OsHAK8),Potassium transporter Q7XIV8,Q8VXB5,A0A0P0VX74 HAK9_ORYSJ,HAK8_ORYSJ,A0A0P0VX74_ORYSJ HAK9 Os07g0679000 LOC_Os07g48130 OJ1409_C08.19,HAK8 Os03g0337500 LOC_Os03g21890 OsJ_10761,Os03g0337500 OSNPB_030337500 FUNCTION: High-affinity potassium transporter. {ECO:0000250}.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. ENOG411DTCY ESK1 Q9LY46 TBL29_ARATH Protein ESKIMO 1 (Protein trichome birefringence-like 29) DISRUPTION PHENOTYPE: Strong constitutive freezing tolerance. Altered vascular apparatus morphology, and reduced xylan acetylation and secondary wall thickening. Reduced rosette-leaf growth and inflorescence size. {ECO:0000269|PubMed:17316173, ECO:0000269|PubMed:21408051, ECO:0000269|PubMed:23340742, ECO:0000269|PubMed:23659919}. Resistant to freezing-J. Browse-2007 FUNCTION: Probable xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan. Negative regulator of cold acclimation. Involved in water economy as well as salt tolerance. Regulated at the transcriptional level by NAC012/SND1. {ECO:0000269|PubMed:17316173, ECO:0000269|PubMed:19054354, ECO:0000269|PubMed:19061521, ECO:0000269|PubMed:20657172, ECO:0000269|PubMed:21408051, ECO:0000269|PubMed:23340742, ECO:0000269|PubMed:23659919}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 56695 Protein ESKIMO 1 (Protein trichome birefringence-like 29) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; xylan O-acetyltransferase activity [GO:1990538]; positive regulation of transcription, DNA-templated [GO:0045893]; response to cold [GO:0009409]; response to freezing [GO:0050826]; xylan biosynthetic process [GO:0045492] TISSUE SPECIFICITY: Expressed in roots, young seedlings, leaves, stems, flowers and developing siliques. Specifically expressed in secondary wall-forming cells, xylem and interfascicular fibers. {ECO:0000269|PubMed:17316173, ECO:0000269|PubMed:21408051, ECO:0000269|PubMed:23340742, ECO:0000269|PubMed:23659919}. locus:2082078; AT3G55990 expressed protein Expressed protein (Os03g0291800 protein),Os03g0291800 protein (Fragment),Os03g0291800 protein Q10MX2,A0A0P0VWY3,A0A0P0VX02 Q10MX2_ORYSJ,A0A0P0VWY3_ORYSJ,A0A0P0VX02_ORYSJ Os03g0291800 LOC_Os03g18140 OSNPB_030291800,Os03g0291800 OSNPB_030291800 ENOG411DTCX DRT102 Q05212 DR102_ARATH DNA damage-repair/toleration protein DRT102 33233 DNA damage-repair/toleration protein DRT102 cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; isomerase activity [GO:0016853]; carbohydrate metabolic process [GO:0005975]; DNA repair [GO:0006281]; response to cold [GO:0009409] locus:2114890; AT3G04880 dna-damage-repair toleration protein DNA-damage-repair/toleration protein-like (Os01g0542000 protein) Q8LHG8 Q8LHG8_ORYSJ Os01g0542000 OSJNBa0062A24.21 OSNPB_010542000 ENOG411DTCZ Q9C9X1 Q9C9X1_ARATH At1g68070 (Putative RING zinc finger protein; 27623-28978) (Zinc finger, C3HC4 type (RING finger) family protein) 38298 At1g68070 (Putative RING zinc finger protein; 27623-28978) (Zinc finger, C3HC4 type (RING finger) family protein) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2200301; AT1G68070 E3 ubiquitin protein ligase Os02g0735900 protein (Fragment) Q0DXS5 Q0DXS5_ORYSJ Os02g0735900 Os02g0735900 OSNPB_020735900 ENOG411DTCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CUGBP Elav-like family member Os05g0373400 protein (cDNA clone:J033067B10, full insert sequence),Os07g0663300 protein (Putative CUG triplet repeat RNA-binding protein 1) (cDNA clone:J023110I18, full insert sequence),Os01g0938200 protein (Putative ribonucleoprotein) (cDNA clone:J013028I07, full insert sequence),Os07g0663300 protein (Fragment),Os05g0373400 protein Q0DIP2,Q7XAN8,Q8RUQ6,A0A0P0XA29,A0A0P0WLG8 Q0DIP2_ORYSJ,Q7XAN8_ORYSJ,Q8RUQ6_ORYSJ,A0A0P0XA29_ORYSJ,A0A0P0WLG8_ORYSJ Os05g0373400 Os05g0373400 OSNPB_050373400,OJ1343_D04.110-1 P0453E03.130-1 Os07g0663300 OSNPB_070663300,Os01g0938200 Os01g0938200 B1150F11.1 OsJ_04706 OSNPB_010938200 P0504E02.25,Os07g0663300 OSNPB_070663300,Os05g0373400 OSNPB_050373400 ENOG411DTCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os10g0541500 protein A0A0P0XWQ7 A0A0P0XWQ7_ORYSJ Os10g0541500 OSNPB_100541500 ENOG411DTCG O80505 ALG8_ARATH Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.265) (Asparagine-linked glycosylation protein 8 homolog) (Dol-P-Glc:Glc(1)Man(9)GlcNAc(2)-PP-dolichyl alpha-1,3-glucosyltransferase) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase) FUNCTION: Adds the second glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation. Transfers glucose from dolichyl phosphate glucose (Dol-P-Glc) onto the lipid-linked oligosaccharide Glc(1)Man(9)GlcNAc(2)-PP-Dol (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. ARA:AT2G44660-MONOMER; R-ATH-446193; 2.4.1.265 58222 Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.265) (Asparagine-linked glycosylation protein 8 homolog) (Dol-P-Glc:Glc(1)Man(9)GlcNAc(2)-PP-dolichyl alpha-1,3-glucosyltransferase) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity [GO:0042281]; oligosaccharide-lipid intermediate biosynthetic process [GO:0006490]; protein N-linked glycosylation [GO:0006487] locus:2042411; AT2G44660 dolichyl pyrophosphate Glc1Man9GlcNAc2 Alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Fragment) Q0DYJ5,A0A0P0VNE5 Q0DYJ5_ORYSJ,A0A0P0VNE5_ORYSJ Os02g0688500 Os02g0688500 OSNPB_020688500,Os02g0688500 OSNPB_020688500 ENOG411DTCF RECQSIM Q9FT69,A0A1P8BBY0,A0A1P8BBY3 RQSIM_ARATH,A0A1P8BBY0_ARATH,A0A1P8BBY3_ARATH ATP-dependent DNA helicase Q-like SIM (EC 3.6.4.12) (RecQ-like protein SIM) (AtRecQsim) (Similar to RecQ protein),RECQ helicase SIM FUNCTION: Plant specific 3'-5' DNA helicase that may play a role in the repair of DNA. {ECO:0000269|PubMed:12856935}. R-ATH-5693616; 3.6.4.12 97466,94426,83356 ATP-dependent DNA helicase Q-like SIM (EC 3.6.4.12) (RecQ-like protein SIM) (AtRecQsim) (Similar to RecQ protein),RECQ helicase SIM chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5' DNA helicase activity [GO:0043138]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; metal ion binding [GO:0046872]; DNA repair [GO:0006281]; double-strand break repair via homologous recombination [GO:0000724],ATP binding [GO:0005524]; ATP-dependent helicase activity [GO:0008026]; nucleic acid binding [GO:0003676]; DNA recombination [GO:0006310] TISSUE SPECIFICITY: Mostly expressed in roots and seedlings, and, to a lower extent, in leaves, shoots, shoot apical mersitem, inflorescences, flowers, siliques and seeds. {ECO:0000269|PubMed:11058127, ECO:0000269|PubMed:12856935}. locus:2180255; AT5G27680 ATP-dependent DNA helicase Q-like Os05g0150600 protein (Putative DNA helicase),Os05g0150600 protein Q5WN04,A0A0P0WI44 Q5WN04_ORYSJ,A0A0P0WI44_ORYSJ Os05g0150600 Os05g0150600 OSNPB_050150600 P0001A07.5,Os05g0150600 OSNPB_050150600 ENOG411DTCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frigida-like protein FRIGIDA-like protein,Os07g0577801 protein (Fragment),Os07g0439750 protein (Fragment) Q5VR39,A0A0P0X839,A0A0P0X5K0 Q5VR39_ORYSJ,A0A0P0X839_ORYSJ,A0A0P0X5K0_ORYSJ Os01g0181000 OJ1174_D05.19 OSNPB_010181000 P0666G04.7,Os07g0577801 OSNPB_070577801,Os07g0439750 OSNPB_070439750 ENOG411DTCC Q9SX62 Q9SX62_ARATH F11A17.16 (Hydroxyproline-rich glycoprotein family protein) 62474 F11A17.16 (Hydroxyproline-rich glycoprotein family protein) chloroplast outer membrane [GO:0009707]; chloroplast organization [GO:0009658] locus:2007755; AT1G48280 NA NA NA NA NA NA NA NA ENOG411DTCB UBP23 Q9FPS4 UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 (EC 3.4.19.12) (Deubiquitinating enzyme 23) (AtUBP23) (Ubiquitin thioesterase 23) (Ubiquitin-specific-processing protease 23) FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT5G57990-MONOMER; 3.4.19.12 94903 Ubiquitin carboxyl-terminal hydrolase 23 (EC 3.4.19.12) (Deubiquitinating enzyme 23) (AtUBP23) (Ubiquitin thioesterase 23) (Ubiquitin-specific-processing protease 23) thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2174403; AT5G57990 ubiquitin carboxyl-terminal hydrolase Os02g0795000 protein (Putative hematopoietic-specific IL-2 deubiquitinating enzyme),Os06g0184300 protein (Fragment) Q6K8Z3,A0A0P0WTR6,A0A0P0WT93,A0A0P0WT89 Q6K8Z3_ORYSJ,A0A0P0WTR6_ORYSJ,A0A0P0WT93_ORYSJ,A0A0P0WT89_ORYSJ Os02g0795000 Os02g0795000 OJ1695_H09.8 OSNPB_020795000,Os06g0184300 OSNPB_060184300 ENOG411DTCM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NA NA NA NA NA NA NA ENOG411DTCN BRCA2B,BRCA2A,BRCA2(IV) Q7Y1C4,Q7Y1C5,A0A1P8B5K0,F4JGU5,A0A1P8B5L3,A0A1P8B5K2 BRC2B_ARATH,BRC2A_ARATH,A0A1P8B5K0_ARATH,F4JGU5_ARATH,A0A1P8B5L3_ARATH,A0A1P8B5K2_ARATH Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B (AtBRCA2B),Protein BREAST CANCER SUSCEPTIBILITY 2 homolog A (AtBRCA2A),BREAST CANCER 2 like 2A DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants brca2a and brca2b are sterile due to aberrant chromosome aggregates, chromosomal fragmentation and missegregation during meiosis. {ECO:0000269|PubMed:22039535, ECO:0000269|PubMed:22077663}. Sensitive to genotoxic stress-S. Toki-2009,Female gametophyte defective; Homozygotes are viable: Sensitive to genotoxic stress-S. Toki-2009 FUNCTION: Involved in double-strand break repair and/or homologous recombination by mediating RAD51- and DMC1-facilitated DNA repair. Plays an essential role in both somatic and meiotic homologous recombination. Is crucial for the formation of RAD51 and DMC1 foci during male meiotic homologous recombination in prophase I. {ECO:0000269|PubMed:15014444, ECO:0000269|PubMed:22039535, ECO:0000269|PubMed:22077663}. R-ATH-5693616; Pathways in cancer (05200),Homologous recombination (03440),Pancreatic cancer (05212),Fanconi anemia pathway (03460) 127255,126652,108356,130738,126885,120616 Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B (AtBRCA2B),Protein BREAST CANCER SUSCEPTIBILITY 2 homolog A (AtBRCA2A),BREAST CANCER 2 like 2A mitochondrion [GO:0005739]; nucleus [GO:0005634]; single-stranded DNA binding [GO:0003697]; double-strand break repair via homologous recombination [GO:0000724]; meiotic cell cycle [GO:0051321]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; single-stranded DNA binding [GO:0003697]; double-strand break repair via homologous recombination [GO:0000724]; meiotic cell cycle [GO:0051321],double-strand break repair via homologous recombination [GO:0000724],double-strand break repair via homologous recombination [GO:0000724]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; embryo sac morphogenesis [GO:0048314]; regulation of defense response [GO:0031347]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:15014444}. locus:2149800;,locus:2126841; AT5G01630,AT4G00020 BRCA2 oligonucleotide/oligosaccharide-binding domain 1 Os01g0164900 protein (Fragment),Os01g0164800 protein (Fragment) Q0JQF8,Q0JQF9 Q0JQF8_ORYSJ,Q0JQF9_ORYSJ Os01g0164900 Os01g0164900 OSNPB_010164900,Os01g0164800 Os01g0164800 OSNPB_010164800 ENOG411DTCI BOU Q93XM7 MCAT_ARATH Mitochondrial carnitine/acylcarnitine carrier-like protein (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein) (Protein A BOUT DE SOUFFLE) DISRUPTION PHENOTYPE: Chlorotic leaves and impaired growth when grown under ambient air, but normal growth under CO(2)-enriched air. {ECO:0000269|PubMed:23181524}. Seedling lethal-P. Carol-2002 FUNCTION: Involved in photorespiratory metabolism. Acts probably as a carrier for a glycine decarboxylase (GDC) cofactor or, alternatively, may act as a mitochondrial glycine shuttle. Involved in the transition from the embryonic stage to the juvenile autotrophic stage. {ECO:0000269|PubMed:12215513, ECO:0000269|PubMed:23181524}. 31023 Mitochondrial carnitine/acylcarnitine carrier-like protein (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein) (Protein A BOUT DE SOUFFLE) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; plastid [GO:0009536]; L-ornithine transmembrane transporter activity [GO:0000064]; mitochondrial ornithine transport [GO:0000066]; mitochondrial transport [GO:0006839] DEVELOPMENTAL STAGE: Detected two days after germination and reached a maximum at three days of growth. TISSUE SPECIFICITY: High expression in cotyledons, leaves, flowers and developing siliques. Lower expression in roots and maturing siliques. Not detected in meristematic tissues. {ECO:0000269|PubMed:23181524}. locus:2178590; AT5G46800 mitochondrial carnitine acylcarnitine carrier-like Os10g0573800 protein (Putative carnitine/acylcarnitine translocase) (cDNA, clone: J065167G16, full insert sequence),Mitochondrial carnitine/acylcarnitine carrier, putative, expressed (Os10g0573700 protein) (Putative carnitine/acylcarnitine translocase) (cDNA clone:001-018-A08, full insert sequence) (cDNA clone:J013003D17, full insert sequence) A3C7K0,Q7XBY4 A3C7K0_ORYSJ,Q7XBY4_ORYSJ Os10g0573800 OsJ_32559 OSJNBa0003O19.7 OSNPB_100573800,LOC_Os10g42299 Os10g0573700 OSJNBa0003O19.8 OSNPB_100573700 ENOG411DTCH GEN2,AtSEND1 Q9M2Z3,A0A1I9LM08 GENL2_ARATH,A0A1I9LM08_ARATH Flap endonuclease GEN-like 2 (EC 3.1.-.-),Single-stranded DNA endonuclease family protein 3.1.-.- 68181,61529 Flap endonuclease GEN-like 2 (EC 3.1.-.-),Single-stranded DNA endonuclease family protein nucleus [GO:0005634]; crossover junction endodeoxyribonuclease activity [GO:0008821]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; DNA repair [GO:0006281],integral component of membrane [GO:0016021]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; DNA repair [GO:0006281] locus:2099463; AT3G48900 Flap endonuclease GEN-like Flap endonuclease GEN-like 2 (EC 3.1.-.-) (OsSEND-1) (Single-strand DNA endonuclease 1),Os08g0101600 protein Q8W5R1,A0A0P0XAS5 GENL2_ORYSJ,A0A0P0XAS5_ORYSJ SEND1 GEN2 Os08g0101600 LOC_Os08g01130 B1147B12.17,Os08g0101600 OSNPB_080101600 FUNCTION: Single-stranded DNA endonuclease activity in vitro. May not be active as double-stranded DNA endonuclease. {ECO:0000269|PubMed:12602891}. ENOG411DTCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0111100 protein,Os06g0113600 protein (Selenium-binding protein-like) (cDNA clone:J033031K01, full insert sequence) (cDNA clone:J033112A03, full insert sequence),Os06g0114300 protein (Os06g0114333 protein) B9FR56,Q5VS19,C7J3Y0 B9FR56_ORYSJ,Q5VS19_ORYSJ,C7J3Y0_ORYSJ Os06g0111100 OsJ_19861 OSNPB_060111100,Os06g0113600 Os06g0113600 OSNPB_060113600 P0541H01.14,Os06g0114300 Os06g0114333 OSNPB_060114300 ENOG411DTCJ F4II71,A0A1P8B2F4,F4II70 F4II71_ARATH,A0A1P8B2F4_ARATH,F4II70_ARATH Mitochondrial substrate carrier family protein 28724,25073,39158 Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; transport [GO:0006810],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839] locus:2039055; AT2G46320 mitochondrial substrate carrier family protein NA NA NA NA NA NA NA ENOG411DTC5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Helix-loop-helix DNA-binding domain containing protein, expressed (Os03g0725800 protein) (Putative symbiotic ammonium transport protein) (Putative transcription factor) (cDNA clone:J013129F07, full insert sequence) Q75GI1 Q75GI1_ORYSJ Os03g0725800 OSJNBb0122C16.8 LOC_Os03g51580 Os03g0725800 OSJNBa0013A09.16 OSNPB_030725800 ENOG411DTC4 Q9FIA1 GDL87_ARATH GDSL esterase/lipase At5g55050 (EC 3.1.1.-) (Extracellular lipase At5g55050) ARA:AT5G55050-MONOMER; 3.1.1.- 41447 GDSL esterase/lipase At5g55050 (EC 3.1.1.-) (Extracellular lipase At5g55050) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] locus:2151953; AT5G55050 GDSL esterase lipase Os03g0580200 protein (Fragment),GDSL-like Lipase/Acylhydrolase family protein, expressed (Os03g0580800 protein) (cDNA clone:J023073A07, full insert sequence),Os03g0581400 protein Q0DQM3,Q10HP9,A0A0N7KHK3 Q0DQM3_ORYSJ,Q10HP9_ORYSJ,A0A0N7KHK3_ORYSJ Os03g0580200 OSNPB_030580200,Os03g0580800 LOC_Os03g38390 Os03g0580800 OSNPB_030580800,Os03g0581400 OSNPB_030581400 ENOG411DTC7 RH39 Q56X76 RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 (EC 3.6.4.13) 3.6.4.13 68924 DEAD-box ATP-dependent RNA helicase 39 (EC 3.6.4.13) chloroplast [GO:0009507]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; ATPase activity [GO:0016887]; large ribosomal subunit rRNA binding [GO:0070180]; chloroplast ribulose bisphosphate carboxylase complex biogenesis [GO:0080158]; chloroplast rRNA processing [GO:1901259]; RNA secondary structure unwinding [GO:0010501] locus:2118509; AT4G09730 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 39 (EC 3.6.4.13) Q5VRY0 RH39_ORYSJ Os01g0184500 LOC_Os01g08930 OsJ_00660 P0510F03.6 ENOG411DTC6 GSH2 P46416 GSHB_ARATH Glutathione synthetase, chloroplastic (GSH synthetase) (GSH-S) (Glutathione synthase) (EC 6.3.2.3) Seedling lethal; Albino seeds and seedlings-A. Meyer-2008 PATHWAY: Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 2/2. ARA:AT5G27380-MONOMER; R-ATH-174403; 6.3.2.3; 6.3.2.3 60271 Glutathione synthetase, chloroplastic (GSH synthetase) (GSH-S) (Glutathione synthase) (EC 6.3.2.3) chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; glutathione binding [GO:0043295]; glutathione synthase activity [GO:0004363]; magnesium ion binding [GO:0000287]; protein homodimerization activity [GO:0042803]; cellular amino acid metabolic process [GO:0006520]; glutathione biosynthetic process [GO:0006750]; response to jasmonic acid [GO:0009753] locus:2146395; AT5G27380 glutathione synthetase Glutathione synthetase (GSH-S) (EC 6.3.2.3),Os12g0263050 protein,Os12g0528400 protein (Fragment),Os12g0263000 protein (Fragment) Q0IRE6,C7JA12,C7JA70,A0A0P0Y8U6,A0A0P0YAV6 Q0IRE6_ORYSJ,C7JA12_ORYSJ,C7JA70_ORYSJ,A0A0P0Y8U6_ORYSJ,A0A0P0YAV6_ORYSJ Os11g0642800 Os11g0642800 OSNPB_110642800,Os12g0263050 Os12g0263050 OSNPB_120263050,Os12g0528400 Os12g0528400 OSNPB_120528400,Os12g0263000 OSNPB_120263000,Os12g0528400 OSNPB_120528400 ENOG411DTC1 Q8RWT4 Q8RWT4_ARATH Ribosomal protein L1p/L10e family (Uncharacterized protein At2g42710) 45780 Ribosomal protein L1p/L10e family (Uncharacterized protein At2g42710) cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; maturation of LSU-rRNA [GO:0000470]; translation [GO:0006412] locus:2041519; AT2G42710 ribosomal protein Os06g0546400 protein A0A0P0WXS0 A0A0P0WXS0_ORYSJ Os06g0546400 OSNPB_060546400 ENOG411DTC0 Q9FHG3 Q9FHG3_ARATH 16S rRNA processing protein RimM family 73784 16S rRNA processing protein RimM family chloroplast [GO:0009507]; cytosol [GO:0005829]; ribosome [GO:0005840]; ribosome binding [GO:0043022]; UDP-N-acetylglucosamine diphosphorylase activity [GO:0003977]; rRNA processing [GO:0006364]; UDP-N-acetylglucosamine biosynthetic process [GO:0006048] locus:2151461; AT5G46420 PRC-barrel domain NA NA NA NA NA NA NA ENOG411DTC3 MYH F4JRF4,A0A1P8B8B5,A0A1P8B8A7 MUTYH_ARATH,A0A1P8B8B5_ARATH,A0A1P8B8A7_ARATH Adenine DNA glycosylase (EC 3.2.2.-) (MutY homolog) (AtMYH),HhH-GPD base excision DNA repair family protein FUNCTION: Involved in oxidative DNA damage repair. Initiates repair of A*oxoG to C*G by removing the inappropriately paired adenine base from the DNA backbone. Possesses both adenine and 2-OH-A DNA glycosylase activities. {ECO:0000250}. R-ATH-110331;R-ATH-110357; 3.2.2.- 72000,61475,69772 Adenine DNA glycosylase (EC 3.2.2.-) (MutY homolog) (AtMYH),HhH-GPD base excision DNA repair family protein nucleus [GO:0005634]; 4 iron, 4 sulfur cluster binding [GO:0051539]; hydrolase activity, acting on glycosyl bonds [GO:0016798]; metal ion binding [GO:0046872]; base-excision repair [GO:0006284],hydrolase activity [GO:0016787]; base-excision repair [GO:0006284] locus:2135828; AT4G12740 A G-specific adenine A/G-specific adenine glycosylase family protein (Os12g0211400 protein),Os12g0211301 protein (Fragment),Os12g0212100 protein Q2QW21,A0A0P0Y897,A0A0P0Y868 Q2QW21_ORYSJ,A0A0P0Y897_ORYSJ,A0A0P0Y868_ORYSJ LOC_Os12g10850 Os12g0211400 OSNPB_120211400,Os12g0211301 OSNPB_120211301,Os12g0212100 OSNPB_120212100 ENOG411DTC2 Q6NNI1,F4IZD3 Q6NNI1_ARATH,F4IZD3_ARATH ARM repeat superfamily protein (AT3G56210 protein) (At3g56210),ARM repeat superfamily protein 21286,21457 ARM repeat superfamily protein (AT3G56210 protein) (At3g56210),ARM repeat superfamily protein locus:2078396; AT3G56210 NA Expressed protein (Os03g0665800 protein) Q75H93 Q75H93_ORYSJ Os03g0665800 LOC_Os03g46310 Os03g0665800 OSJNBa0056E06.19 OSNPB_030665800 ENOG411DTC9 F4IJ77 AATP4_ARATH AAA-ATPase At2g46620 (EC 3.6.1.3) 3.6.1.3 55910 AAA-ATPase At2g46620 (EC 3.6.1.3) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] locus:2039981; AT2G46620 AAA-type ATPase family protein ATPase, AAA family protein, expressed (Os03g0114400 protein) (cDNA clone:002-150-D02, full insert sequence),Os01g0354450 protein (Fragment),Os10g0519300 protein (Fragment) Q8GZX0,A0A0P0V2B2,A0A0P0XWC2 Q8GZX0_ORYSJ,A0A0P0V2B2_ORYSJ,A0A0P0XWC2_ORYSJ OSJNBa0090O10.13 LOC_Os03g02330 Os03g0114400 OSNPB_030114400,Os01g0354450 OSNPB_010354450,Os10g0519300 OSNPB_100519300 ENOG411DTC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GPI-GlcNAc transferase complex PIG-H component Os01g0166400 protein A0A0P0UYI6,A0A0P0UYG8 A0A0P0UYI6_ORYSJ,A0A0P0UYG8_ORYSJ Os01g0166400 OSNPB_010166400 ENOG411E4Z9 T10K17.160,MPH15.15 Q9M2Q3,Q9FG28 Q9M2Q3_ARATH,Q9FG28_ARATH At3g57950 (Cotton fiber protein) (Uncharacterized protein T10K17.160),At5g06790 (Cotton fiber protein) (Emb|CAB67623.1) (Uncharacterized protein At5g06790) 20869,23892 At3g57950 (Cotton fiber protein) (Uncharacterized protein T10K17.160),At5g06790 (Cotton fiber protein) (Emb|CAB67623.1) (Uncharacterized protein At5g06790) locus:2095843;,locus:2170189; AT3G57950,AT5G06790 NA Os04g0665666 protein (Fragment) A0A0P0WG41 A0A0P0WG41_ORYSJ Os04g0665666 OSNPB_040665666 ENOG411E4Z8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E4Z5 TRX5,TRX3,TRX4 Q39241,Q42403,Q39239 TRXH5_ARATH,TRXH3_ARATH,TRXH4_ARATH Thioredoxin H5 (AtTrxh5) (Protein LOCUS OF INSENSITIVITY TO VICTORIN 1) (Thioredoxin 5) (AtTRX5),Thioredoxin H3 (AtTrxh3) (Thioredoxin 3) (AtTRX3),Thioredoxin H4 (AtTrxh4) (Thioredoxin 4) (AtTRX4) DISRUPTION PHENOTYPE: Insensitivity to victorin phytotoxin. {ECO:0000269|PubMed:17322408}.,DISRUPTION PHENOTYPE: High sensitivity to heat shock. {ECO:0000269|PubMed:19339505}. Insensitive to victorin 1 microbial toxin produced by the fungus Cochliobolus victoriae. Resistant to victorin (fungal toxin)-T. Wolpert-2007 FUNCTION: Thiol-disulfide oxidoreductase involved in response to pathogens and oxidative stresses. Required for the response to victorin, a phytotoxin which induces programmed cell death in sensitive plants. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:14749482, ECO:0000269|PubMed:17322408}.,FUNCTION: Thiol-disulfide oxidoreductase that possesses disulfide reductase and insulin disulfide bonds reducing activities. Heat shock causes oligomerization and formation of high molecular weight (HMW) complexes with concomitant functional switching from a disulfide reductase to chaperone. {ECO:0000269|PubMed:14749482, ECO:0000269|PubMed:19339505}.,FUNCTION: Thiol-disulfide oxidoreductase probably involved in the redox regulation of a number of cytosolic enzymes. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:14749482}. 13122,13109,13063 Thioredoxin H5 (AtTrxh5) (Protein LOCUS OF INSENSITIVITY TO VICTORIN 1) (Thioredoxin 5) (AtTRX5),Thioredoxin H3 (AtTrxh3) (Thioredoxin 3) (AtTRX3),Thioredoxin H4 (AtTrxh4) (Thioredoxin 4) (AtTRX4) apoplast [GO:0048046]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; defense response to fungus [GO:0050832]; glycerol ether metabolic process [GO:0006662]; response to cadmium ion [GO:0046686]; response to microbial phytotoxin [GO:0010188]; response to oxidative stress [GO:0006979],cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; defense response to fungus [GO:0050832]; glycerol ether metabolic process [GO:0006662]; heat acclimation [GO:0010286]; protein folding [GO:0006457]; protein oligomerization [GO:0051259]; response to cytokinin [GO:0009735]; response to heat [GO:0009408]; response to microbial phytotoxin [GO:0010188],cytosol [GO:0005829]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2825451;,locus:2159971;,locus:2013169; AT1G45145,AT5G42980,AT1G19730 Thioredoxin Thioredoxin Q6L4X5 Q6L4X5_ORYSJ Os05g0508500 OsJ_19140 OSJNBb0108E17.4 OSNPB_050508500 ENOG411E4Z4 MMN10.24 Q9FJD8,B3H573 Q9FJD8_ARATH,B3H573_ARATH CCT motif family protein (Gb|AAF07370.1),CCT motif family protein 26592,20344 CCT motif family protein (Gb|AAF07370.1),CCT motif family protein nucleus [GO:0005634]; regulation of flower development [GO:0009909]; response to light stimulus [GO:0009416] locus:2168083; AT5G59990 CCT motif NA NA NA NA NA NA NA ENOG411E4Z7 FAX6,FAX5 Q9LJU6,Q9C6T7 FAX6_ARATH,FAX5_ARATH Protein FATTY ACID EXPORT 6 (At-FAX6),Protein FATTY ACID EXPORT 5 (At-FAX5) FUNCTION: May be involved in free fatty acids export. {ECO:0000250|UniProtKB:Q93V66}. MISCELLANEOUS: For all TMEM14 proteins, 4 hydrophobic alpha-helical domains are predicted. However, NMR structure determination of the human TMEM14A showed that only 3 of these helices are membrane-spaning while the amphiphilic N-terminal helix is probably located at the lipid micelle-water interface. {ECO:0000305|PubMed:25646734}. 12511,12512 Protein FATTY ACID EXPORT 6 (At-FAX6),Protein FATTY ACID EXPORT 5 (At-FAX5) cytoplasm [GO:0005737]; endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; nucleus [GO:0005634],integral component of membrane [GO:0016021] locus:2085780;,locus:2033177; AT3G20510,AT1G50740 Transmembrane proteins 14C Os03g0568500 protein (cDNA clone:001-009-G05, full insert sequence) Q10I13 Q10I13_ORYSJ Os03g0568500 LOC_Os03g37090 Os03g0568500 OSJNBa0004B24.3 OSNPB_030568500 ENOG411E4Z6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os08g0364400 protein (Fragment),Os06g0104800 protein A0A0P0XFV6,A0A0P0WRU2 A0A0P0XFV6_ORYSJ,A0A0P0WRU2_ORYSJ Os08g0364400 OSNPB_080364400,Os06g0104800 OSNPB_060104800 ENOG411E4Z1 DOF1.5 P68350 DOF15_ARATH Dof zinc finger protein DOF1.5 (AtDOF1.5) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}. 19423 Dof zinc finger protein DOF1.5 (AtDOF1.5) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; seed coat development [GO:0010214]; transcription, DNA-templated [GO:0006351] locus:2030006; AT1G29160 Dof-type zinc finger domain-containing protein NA NA NA NA NA NA NA ENOG411E4Z0 psbE P56779 PSBE_ARATH Cytochrome b559 subunit alpha (PSII reaction center subunit V) FUNCTION: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00642}. MetaCyc:ATCG00580-MONOMER; 9387 Cytochrome b559 subunit alpha (PSII reaction center subunit V) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; photosynthetic electron transport chain [GO:0009767] ATCG00580 This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex Cytochrome b559 subunit alpha (PSII reaction center subunit V) P0C370,Q7F2L7 PSBE_ORYSJ,Q7F2L7_ORYSJ psbE LOC_Osp1g00520 Nip079,psbE Os03g0659233 B1065E10.6 OSJNBa0036E18.36 OSNPB_030659233 P0018C10.65 FUNCTION: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_00642}.,FUNCTION: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000256|HAMAP-Rule:MF_00642, ECO:0000256|RuleBase:RU004529}. ENOG411E4Z2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411DYFP Q9SVR1 Q9SVR1_ARATH At4g13160 (Uncharacterized protein At4g13160) (Uncharacterized protein F17N18.50) 33066 At4g13160 (Uncharacterized protein At4g13160) (Uncharacterized protein F17N18.50) integral component of membrane [GO:0016021]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777] locus:2119325; AT4G13160 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411DYFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Leucine Rich Repeat family protein, expressed (Os10g0469700 protein) (cDNA clone:J013052O14, full insert sequence),Os10g0468800 protein Q337L7,A0A0P0XVK4 Q337L7_ORYSJ,A0A0P0XVK4_ORYSJ LOC_Os10g33140 Os10g0469700 OsJ_31851 OSNPB_100469700,Os10g0468800 OSNPB_100468800 ENOG411E4ZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA wuschel homeobox protein Putative WUSCHEL-related homeobox 2 (OsWOX2) Q5W7C3 WOX2_ORYSJ WOX2 Os05g0118700 LOC_Os05g02730 OsJ_016162 P0496H07.20 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. ENOG411E4ZN Q56YV7,F4HV88 Q56YV7_ARATH,F4HV88_ARATH Ribosomal protein L18ae family 11570,11673 Ribosomal protein L18ae family integral component of membrane [GO:0016021]; ribosome [GO:0005840],integral component of membrane [GO:0016021]; ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:1006230715; AT1G54217 expressed protein NA NA NA NA NA NA NA ENOG411E4ZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os05g0440900 protein B9FJ74 B9FJ74_ORYSJ Os05g0440900 Os05g0440900 OsJ_18695 OSNPB_050440900 ENOG411E4ZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E4ZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os06g0537600 protein (cDNA clone:001-110-A08, full insert sequence) Q5Z6U8 Q5Z6U8_ORYSJ Os06g0537600 Os06g0537600 OsJ_21586 OSNPB_060537600 P0551A03.25 ENOG411E4ZJ C7A10.60 O23157 O23157_ARATH AT4g37300/C7A10_60 (Maternal effect embryo arrest 59) (Uncharacterized protein At4g37300) 18815 AT4g37300/C7A10_60 (Maternal effect embryo arrest 59) (Uncharacterized protein At4g37300) embryo development ending in seed dormancy [GO:0009793] locus:2115189; AT4G37300 Inherit from euNOG: maternal effect embryo arrest 59 NA NA NA NA NA NA NA ENOG411E4ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PMEI NA NA NA NA NA NA NA ENOG411E4ZG RBG4 Q9LIS2 RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial (AtGR-RBP4) (AtRBG4) (Glycine-rich protein 4) (AtGRP4) (Mitochondrial RNA-binding protein 1b) (At-mRBP1b) FUNCTION: Possibly has a role in RNA transcription or processing during stress. Binds sequence non-specifically to RNAs and DNAs. {ECO:0000269|PubMed:16207746}. MISCELLANEOUS: Plants overexpressing RBG4 display retarded germination under salt and dehydration stress. 14129 Glycine-rich RNA-binding protein 4, mitochondrial (AtGR-RBP4) (AtRBG4) (Glycine-rich protein 4) (AtGRP4) (Mitochondrial RNA-binding protein 1b) (At-mRBP1b) mitochondrion [GO:0005739]; double-stranded DNA binding [GO:0003690]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; mitochondrial RNA modification [GO:1900864]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Abundantly expressed in young plants, root tips, and flowers, but weakly in mature leaves and stems, implying highly expression in actively proliferating organs. {ECO:0000269|PubMed:16207746}. locus:2076096; AT3G23830 Glycine-rich RNA-binding protein NA NA NA NA NA NA NA ENOG411E4ZF AGL28 Q9LMM8 AGL28_ARATH Agamous-like MADS-box protein AGL28 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:16899218}. FUNCTION: Probable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}. MISCELLANEOUS: Plants over-expressing AGL28 show an early flowering phenotype. {ECO:0000269|PubMed:16899218}. 28030 Agamous-like MADS-box protein AGL28 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of flower development [GO:0009911]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the embryo at the globular stage and in endosperm nuclei and chalazal endosperm of developing seeds. {ECO:0000269|PubMed:16899218}. TISSUE SPECIFICITY: Expressed in roots, leaves and shoot apices. {ECO:0000269|PubMed:16899218}. locus:2025386; AT1G01530 agamous-like MADS-box protein AGL62-like NA NA NA NA NA NA NA ENOG411E4ZA Q9SRD6,A0A1P8AQG9,Q9SRD5 Q9SRD6_ARATH,A0A1P8AQG9_ARATH,Q9SRD5_ARATH HSP20-like chaperones superfamily protein (Putative heat shock protein; 50341-51150),HSP20-like chaperones superfamily protein,HSP20-like chaperones superfamily protein (Putative heat shock protein; 53413-59028) 28693,225799,216900 HSP20-like chaperones superfamily protein (Putative heat shock protein; 50341-51150),HSP20-like chaperones superfamily protein,HSP20-like chaperones superfamily protein (Putative heat shock protein; 53413-59028) integral component of membrane [GO:0016021] locus:2030061;,locus:2030071; AT1G76770,AT1G76780 heat shock NA NA NA NA NA NA NA ENOG411E4ZC Q8LDM8,A0A1P8ANW9 Q8LDM8_ARATH,A0A1P8ANW9_ARATH CCT motif family protein (Uncharacterized protein At1g07050),CCT motif family protein 23320,23581 CCT motif family protein (Uncharacterized protein At1g07050),CCT motif family protein nucleus [GO:0005634] locus:2007482; AT1G07050 CCT motif NA NA NA NA NA NA NA ENOG411E4ZB Q8VZT0,Q9FK53 NLAL1_ARATH,NLAL2_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1,H/ACA ribonucleoprotein complex subunit 1-like protein 2 "FUNCTION: Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine (""psi"") residues may serve to stabilize the conformation of rRNAs (By similarity). {ECO:0000250}." 20983,20313 Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1,H/ACA ribonucleoprotein complex subunit 1-like protein 2 box H/ACA snoRNP complex [GO:0031429]; chloroplast thylakoid membrane [GO:0009535]; nucleolus [GO:0005730]; box H/ACA snoRNA binding [GO:0034513]; snoRNA guided rRNA pseudouridine synthesis [GO:0000454],box H/ACA snoRNP complex [GO:0031429]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; box H/ACA snoRNA binding [GO:0034513]; snoRNA guided rRNA pseudouridine synthesis [GO:0000454] locus:2079349;,locus:2172329; AT3G03920,AT5G18180 h ACA ribonucleoprotein complex subunit 1-like protein H/ACA ribonucleoprotein complex subunit Q2R242 Q2R242_ORYSJ LOC_Os11g37080 Os11g0579800 OsJ_34372 OSNPB_110579800 FUNCTION: Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. {ECO:0000256|RuleBase:RU364004}. ENOG411E4ZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0633200 protein (Putative SC35-like splicing factor SCL30a) (cDNA clone:006-303-C11, full insert sequence) Q7XI49 Q7XI49_ORYSJ P0519E12.127 Os07g0633200 OSNPB_070633200 ENOG411E4ZX BZIP11 O65683 BZP11_ARATH bZIP transcription factor 11 (AtbZIP11) (G-box-binding factor 6) (bZIP transcription factor ATB2) FUNCTION: Transcription factor that binds to the DNA sequence 5'-ACTCAT-3' in target gene promoters. Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879). Positively regulates the expression of ASN1 and POX2/PRODH2 genes, which are involved in amino acid metabolism (PubMed:18088315). Regulates several metabolic pathways such as myo-inositol, raffinose and trehalose. Regulates several trehalose metabolism genes, including TRE1, TPP5 and TPP6 (PubMed:21534971). Mediates recruitment of the histone acetylation machinery to activate auxin-induced transcription. Interacts with ADA2B adapter protein to promote ADA2B-mediated recruitment of SAGA-like histone acetyltransferase complexes to specific auxin-responsive genes (PubMed:24861440). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:18088315, ECO:0000269|PubMed:21534971, ECO:0000269|PubMed:24861440}. MISCELLANEOUS: A highly conserved upstream open reading frame (uORF) coding for 42 amino acids is essential for the BZIP11 sucrose-induced repression of translation (SIRT) (PubMed:15208401). Plants over-expressing BZIP11 show severe alterations of plant growth and development, reduced seed set and viability (PubMed:18088315). {ECO:0000269|PubMed:15208401, ECO:0000269|PubMed:18088315}. 18035 bZIP transcription factor 11 (AtbZIP11) (G-box-binding factor 6) (bZIP transcription factor ATB2) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of translation [GO:0017148]; positive regulation of transcription, DNA-templated [GO:0045893]; response to sucrose [GO:0009744]; sucrose induced translational repression [GO:0080149]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in stems and flowers (PubMed:9620274). Expressed in root tips, cotyledons, leaf vasculature, embryos, apical parts of siliques and funiculi (PubMed:9721683). {ECO:0000269|PubMed:9620274, ECO:0000269|PubMed:9721683}. locus:2139584; AT4G34590 ocs element-binding factor 1 Os06g0626801 protein,Os02g0132500 protein (cDNA clone:J023064O22, full insert sequence),Os06g0192200 protein,Os06g0626950 protein Q67VR4,Q0E476,A0A0P0WTW9,A0A0P0WYW7 Q67VR4_ORYSJ,Q0E476_ORYSJ,A0A0P0WTW9_ORYSJ,A0A0P0WYW7_ORYSJ Os06g0626801 OSJNBa0072A21.36 OSNPB_060626801 P0530H05.7,Os02g0132500 Os02g0132500 OsJ_05262 OSNPB_020132500,Os06g0192200 OSNPB_060192200,Os06g0626950 OSNPB_060626950 ENOG411E4ZZ Q9C745 Q9C745_ARATH Uncharacterized protein F11I4_6 19896 Uncharacterized protein F11I4_6 locus:2008119; AT1G48770 expressed protein Os01g0688600 protein (cDNA clone:J013125P17, full insert sequence) (cDNA clone:J023139D20, full insert sequence) Q5N7K6 Q5N7K6_ORYSJ Os01g0688600 Os01g0688600 OsJ_03064 OSNPB_010688600 P0519D04.35 ENOG411E4ZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0152900 protein (cDNA clone:006-208-B03, full insert sequence) Q0E3V2 Q0E3V2_ORYSJ Os02g0152900 Os02g0152900 OSNPB_020152900 ENOG411E4ZT A1A6I1 A1A6I1_ARATH At1g69980 (Structural polyprotein) 22845 At1g69980 (Structural polyprotein) integral component of membrane [GO:0016021] locus:2020673; AT1G69980 NA Os09g0560400 protein B9G519 B9G519_ORYSJ Os09g0560400 OsJ_30331 OSNPB_090560400 ENOG411E4ZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of chromosome condensation (RCC1) repeat NA NA NA NA NA NA NA ENOG411E4ZV ERF109 Q9SZ06 EF109_ARATH Ethylene-responsive transcription factor ERF109 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 29447 Ethylene-responsive transcription factor ERF109 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell division [GO:0051301]; defense response to fungus [GO:0050832]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944] locus:2116224; AT4G34410 Transcription factor NA NA NA NA NA NA NA ENOG411E4ZQ Q9LHI0 NDUA6_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT3G12260-MONOMER; 15082 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 membrane [GO:0016020]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; oxidation-reduction process [GO:0055114] locus:2082209; AT3G12260 NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex Os07g0640100 protein (cDNA clone:001-025-C03, full insert sequence) (cDNA clone:J023073H14, full insert sequence) Q8GS72 Q8GS72_ORYSJ P0524G08.101 OJ1340_C08.134 Os07g0640100 OsJ_25305 OSNPB_070640100 ENOG411E4ZP RAP2-1,RAP2.1 Q8LC30,A0A1P8ATH8 RAP21_ARATH,A0A1P8ATH8_ARATH Ethylene-responsive transcription factor RAP2-1 (Protein RELATED TO APETALA2 1),Related to AP2 1 The mutant plants showed an improved tolerance to the drought and cold. Resistant to drought and low temperature-J. Liu-2010 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 17241,15937 Ethylene-responsive transcription factor RAP2-1 (Protein RELATED TO APETALA2 1),Related to AP2 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of transcription, DNA-templated [GO:0045893]; response to cold [GO:0009409]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}. locus:2825842; AT1G46768 AP2 NA NA NA NA NA NA NA ENOG411E4ZS Q9SI97 Q9SI97_ARATH At2g28710 (C2H2-type zinc finger family protein) (Putative C2H2-type zinc finger protein) 16730 At2g28710 (C2H2-type zinc finger family protein) (Putative C2H2-type zinc finger protein) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2054548; AT2G28710 zinc finger NA NA NA NA NA NA NA ENOG411E4ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling (By similarity) NA NA NA NA NA NA NA ENOG411DYFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF936) Os07g0588300 protein Q6ZIP2 Q6ZIP2_ORYSJ Os07g0588300 OJ1047_C01.21 OsJ_24936 OSJNBb0005G07.115 OSNPB_070588300 ENOG411DYFC rpoC1 P56763 RPOC1_ARATH DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000255|HAMAP-Rule:MF_01323}. Purine metabolism (00230),Pyrimidine metabolism (00240),RNA polymerase (03020),Metabolic pathways (01100) 2.7.7.6 78583 DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') chloroplast [GO:0009507]; nucleoid [GO:0009295]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] locus:504954642; ATCG00180 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') P0C506 RPOC1_ORYSJ rpoC1 LOC_Osp1g00250 Nip037 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000255|HAMAP-Rule:MF_01323}. ENOG411DYFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GED Os09g0572900 protein (Putative phragmoplastin 12) Q650Z3 Q650Z3_ORYSJ Os09g0572900 B1130E07.11 B1331F11.31 OSNPB_090572900 ENOG411DX50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain DNA-binding protein-like (Os08g0432800 protein) (cDNA clone:002-137-H01, full insert sequence) Q6ZA99 Q6ZA99_ORYSJ Os08g0432800 Os08g0432800 OSNPB_080432800 P0431A03.9 ENOG411DX5C XTH16,XTH15 Q8LG58,Q38911 XTH16_ARATH,XTH15_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 16 (At-XTH16) (XTH-16) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 15 (At-XTH15) (XTH-15) (EC 2.4.1.207) (EC 3.2.1.151) DISRUPTION PHENOTYPE: No visible growth defects, but increased aluminum resistance. {ECO:0000269|PubMed:23776189}. Short petioles under green shadelight and low red:far-red light-R. Pierik-2010 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Has a high XET activity, but little or no XEH activity in vitro. Acceptor preferences are XXXGol > XLLGol = XLFGol > XXLGol > XXFGol. {ECO:0000269|PubMed:25446234}. ARA:AT3G23730-MONOMER;,ARA:AT4G14130-MONOMER; 2.4.1.207,2.4.1.207; 3.2.1.151 33147,32687 Probable xyloglucan endotransglucosylase/hydrolase protein 16 (At-XTH16) (XTH-16) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase protein 15 (At-XTH15) (XTH-15) (EC 2.4.1.207) (EC 3.2.1.151) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; xyloglucan-specific endo-beta-1,4-glucanase activity [GO:0033946]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Strongly expressed in roots, hypocotyls and cotyledons. Aslo detected in inflorescence stems and in the carpels and styles in flowers. {ECO:0000269|PubMed:16830179}. locus:2095168;,locus:2129445; AT3G23730,AT4G14130 Xyloglucan endo-transglycosylase NA NA NA NA NA NA NA ENOG411DX5M emb1692 Q9FM53 Q9FM53_ARATH Ubiquitin carboxyl-terminal hydrolase family protein Embryo defective; Transition-D. Meinke-2002 56788 Ubiquitin carboxyl-terminal hydrolase family protein hydrolase activity [GO:0016787] locus:2166305; AT5G62990 Plant organelle RNA recognition domain OSJNBb0054B09.13 protein (Os04g0312100 protein) (cDNA clone:J013170G11, full insert sequence) Q7XRX7 Q7XRX7_ORYSJ Os04g0312100 OSJNBb0054B09.13 OSNPB_040312100 ENOG411DX5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Metallophosphoesterase 1 Os06g0222800 protein (cDNA clone:J033071H10, full insert sequence) Q67UJ7 Q67UJ7_ORYSJ Os06g0222800 Os06g0222800 OSNPB_060222800 P0638H11.5 ENOG411EKMF OTU10 A0A1P8BF55,Q9LZF7 A0A1P8BF55_ARATH,Q9LZF7_ARATH Cysteine proteinases superfamily protein,At5g03330 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme OTU10) (Uncharacterized protein F12E4_60) 40762,41689 Cysteine proteinases superfamily protein,At5g03330 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme OTU10) (Uncharacterized protein F12E4_60) locus:2142659; AT5G03330 OTU-like cysteine protease family protein NA NA NA NA NA NA NA ENOG411E0EY OEP80 Q9C5J8 OEP80_ARATH Outer envelope protein 80, chloroplastic (Chloroplastic outer envelope protein of 80 kDa) (AtOEP80) (Protein TOC75-V) (AtToc75-V) DISRUPTION PHENOTYPE: Embryo lethality at the globular stage. {ECO:0000269|PubMed:18621981}. Segregates for embryo lethal phenotype- 25% of embryos abort during globular stage.Arrested embryos have a raspberry like phenotype. Embryo defective; Globular-P. Jarvis-2008 FUNCTION: Plays an essential role during early stages of plastid development. {ECO:0000269|PubMed:18621981}. MISCELLANEOUS: Probably not processed upon targeting to chloroplasts. The targeting is independent of the general import pathway. 79936 Outer envelope protein 80, chloroplastic (Chloroplastic outer envelope protein of 80 kDa) (AtOEP80) (Protein TOC75-V) (AtToc75-V) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; chloroplast organization [GO:0009658] DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:18621981}. locus:2183164; AT5G19620 outer envelope protein of 80 Outer envelope protein 80, chloroplastic (Chloroplastic outer envelope protein of 80 kDa) (OsOEP80),Os02g0196300 protein (Fragment) Q6H7M7,A0A0N7KEV3 OEP80_ORYSJ,A0A0N7KEV3_ORYSJ OEP80 OEP75 Os02g0196300 LOC_Os02g10260 OJ1225_F07.23 OJ1524_D08.8 OsJ_005573,Os02g0196300 OSNPB_020196300 MISCELLANEOUS: Probably not processed upon targeting to chloroplasts. {ECO:0000250}. ENOG411E0EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MAC/Perforin domain NA NA NA NA NA NA NA ENOG411E0EW MYB36 Q9FKL2 MYB36_ARATH Transcription factor MYB36 (Myb-related protein 36) (AtMYB36) DISRUPTION PHENOTYPE: In myb36-1, myb36-2 and myb36-4, impaired Casparian strips formation replaced by ectopic lignin-like material in the corners of endodermal cells, associated with reduced expression of several endodermis-specific genes and abnormal CASP1 localization in the plasma membrane (PubMed:26124109, PubMed:26371322). Multiple changes to leaf ionome, including elevated concentrations of sodium, magnesium, and zinc and decreased calcium, manganese, and iron. Longer root hairs (PubMed:26124109). Delayed and defective barrier (Casparian strips) formation as well as extra cell divisions in the meristem in roots (PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. FUNCTION: Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. 37980 Transcription factor MYB36 (Myb-related protein 36) (AtMYB36) Casparian strip [GO:0048226]; nucleus [GO:0005634]; regulatory region DNA binding [GO:0000975]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; endodermal cell differentiation [GO:0035987]; negative regulation of cell proliferation [GO:0008285]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of cell differentiation [GO:0045597]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of ion homeostasis [GO:2000021]; regulation of root morphogenesis [GO:2000067]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. locus:2174557; AT5G57620 Transcription factor Os08g0248700 protein (Putative P-type R2R3 Myb protein) (cDNA clone:J023093J22, full insert sequence),Os02g0786400 protein Q6Z0A5,A0A0P0VQE6 Q6Z0A5_ORYSJ,A0A0P0VQE6_ORYSJ Os08g0248700 Os08g0248700 OSJNBb0003H03.23 OSNPB_080248700,Os02g0786400 OSNPB_020786400 ENOG411E0EP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain DNA binding protein-like (Os09g0410700 protein) Q6ESL3 Q6ESL3_ORYSJ OJ1294_G06.8 Os09g0410700 OSNPB_090410700 ENOG411E0ER F4IHN6 F4IHN6_ARATH Ring/U-Box superfamily protein 94770 Ring/U-Box superfamily protein cytoplasm [GO:0005737]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:2057846; AT2G27950 Inherit from NOG: RING NA NA NA NA NA NA NA ENOG411E0ES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0912900 protein (Selenium-binding protein-like) Q8S090 Q8S090_ORYSJ Os01g0912900 Os01g0912900 OsJ_04514 OSNPB_010912900 P0470A12.35 ENOG411E0EM SFR2 Q93Y07 SFR2_ARATH Galactolipid galactosyltransferase SFR2, chloroplastic (EC 2.4.1.184) (Galactolipid:galactolipid galactosyltransferase) (GGGT) (Protein SENSITIVE TO FREEZING 2) (AtSFR2) DISRUPTION PHENOTYPE: Sensitive to freezing (PubMed:15258268, PubMed:20798281). Loss of tri- and tetragalactosyldiacylglycerol accumulation during freezing (PubMed:20798281). {ECO:0000269|PubMed:15258268, ECO:0000269|PubMed:20798281}. Sensitive to freezing-G. Warren-2004 FUNCTION: Glycosyl hydrolase family protein acting primarily as a highly specific galactosyltransferase (PubMed:25100720). Synthesizes digalactosyldiacylglycerol from monogalactosyldiacylglycerol in the absence of UDP-galactose in vitro (PubMed:14600212). Hydrolyzes o- and p-nitrophenyl beta-D-glucoside in vitro (PubMed:15258268). Plays a role in freezing tolerance (PubMed:15258268, PubMed:18466306, PubMed:20798281). May play a role in chloroplast protection (PubMed:18466306). {ECO:0000269|PubMed:14600212, ECO:0000269|PubMed:15258268, ECO:0000269|PubMed:18466306, ECO:0000269|PubMed:20798281, ECO:0000269|PubMed:25100720}. ARA:AT3G06510-MONOMER;MetaCyc:AT3G06510-MONOMER; 2.4.1.184 70779 Galactolipid galactosyltransferase SFR2, chloroplastic (EC 2.4.1.184) (Galactolipid:galactolipid galactosyltransferase) (GGGT) (Protein SENSITIVE TO FREEZING 2) (AtSFR2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; integral component of chloroplast outer membrane [GO:0031359]; plastid [GO:0009536]; beta,beta digalactosyldiacylglycerol galactosyltransferase activity [GO:0102996]; beta-glucosidase activity [GO:0008422]; cellobiose glucosidase activity [GO:0080079]; galactolipid galactosyltransferase activity [GO:0046480]; galactosyltransferase activity [GO:0008378]; transferase activity, transferring glycosyl groups [GO:0016757]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657]; response to cold [GO:0009409]; response to freezing [GO:0050826] TISSUE SPECIFICITY: Expressed in hypocotyls, cotyledons, stems, leaves, pedicels, sepals, anthers and pistils. Limited expression in roots. Not detected in petals or filaments. {ECO:0000269|PubMed:15258268}. locus:2084319; AT3G06510 beta-glucosidase-like SFR2 Beta-glucosidase-like SFR2, chloroplastic (EC 2.4.1.184) (Beta-glucosidase 36) (Os11bglu36) (Protein SENSITIVE TO FREEZING 2) (OsSFR2),Os11g0683500 protein Q8L6H7,A0A0P0Y5A9 SFR2_ORYSJ,A0A0P0Y5A9_ORYSJ SFR2 BGLU36 Os11g0683500 LOC_Os11g45710 OsJ_34793,Os11g0683500 OSNPB_110683500 FUNCTION: Galactosyltransferase synthesizing digalactosyldiacylglycerol from monogalactosyldiacylglycerol in the absence of UDP-galactose (By similarity). Potentially involved in freezing tolerance (PubMed:18466306). {ECO:0000250|UniProtKB:Q93Y07, ECO:0000269|PubMed:18466306}. MISCELLANEOUS: Rice SFR2 is able to rescue freezing tolerance phenotype in Arabidopsis sfr2 mutant. {ECO:0000269|PubMed:18466306}. ENOG411E0EN PFA-DSP2 Q84MD6 Q84MD6_ARATH At2g32960 (Phosphotyrosine protein phosphatases superfamily protein) (Uncharacterized protein At2g32960) FUNCTION: Possesses phosphotyrosine phosphatase activity in vitro (PubMed:21409566). Hydrolyzes para-nitrophenyl phosphate in vitro (PubMed:17976645, PubMed:21409566). Hydrolyzes O-methylfluorescein phosphate in vitro. Dephosphorylates the phosphoinositides PI(3,5)P2 (PubMed:21409566). {ECO:0000269|PubMed:17976645, ECO:0000269|PubMed:21409566}. 29159 At2g32960 (Phosphotyrosine protein phosphatases superfamily protein) (Uncharacterized protein At2g32960) cytoplasm [GO:0005737]; phosphatase activity [GO:0016791]; protein tyrosine phosphatase activity [GO:0004725] locus:2059349; AT2G32960 tyrosine specific protein phosphatase family protein Os09g0135700 protein (Putative tyrosine specific protein phosphatase protein) (cDNA clone:J033099M08, full insert sequence) Q6K461 Q6K461_ORYSJ Os09g0135700 OsJ_28466 OSNPB_090135700 P0006E02.21 ENOG411E0EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYB family transcription factor OSJNBa0005N02.4 protein (Os04g0566600 protein) (cDNA clone:J033069K05, full insert sequence) Q7XUI6 Q7XUI6_ORYSJ Os04g0566600 Os04g0566600 OsJ_15811 OSJNBa0005N02.4 OSNPB_040566600 ENOG411E0EK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAPA-1-like conserved region NA NA NA NA NA NA NA ENOG411E0EF Q0WVP2 Q0WVP2_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g13410) 53168 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At1g13410) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2010012; AT1G13410 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E0EA CML21 Q52K82,A0A1P8B552 CML21_ARATH,A0A1P8B552_ARATH Probable calcium-binding protein CML21 (Calmodulin-like protein 21),Calcium-binding EF-hand family protein FUNCTION: Potential calcium sensor. {ECO:0000250}. 26770,34129 Probable calcium-binding protein CML21 (Calmodulin-like protein 21),Calcium-binding EF-hand family protein cytoplasm [GO:0005737]; calcium ion binding [GO:0005509],calcium ion binding [GO:0005509] locus:2131458; AT4G26470 calcium-binding protein Calcium-binding EF hand-like protein (Os06g0609600 protein) (cDNA clone:J023127M12, full insert sequence),Calcium-binding EF hand-like protein (Os02g0198200 protein) (cDNA clone:001-017-B12, full insert sequence) Q69V45,Q6H739 Q69V45_ORYSJ,Q6H739_ORYSJ Os06g0609600 Os06g0609600 OsJ_21942 OSNPB_060609600 P0490F09.6 P0556B08.33,Os02g0198200 Os02g0198200 OSNPB_020198200 P0026H03.15 ENOG411E0E8 F8D20.260 O81806 O81806_ARATH At4g35750 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) (Uncharacterized protein AT4g35750) (Uncharacterized protein At4g35750; F8D20.260) (Uncharacterized protein F8D20.260) 23576 At4g35750 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) (Uncharacterized protein AT4g35750) (Uncharacterized protein At4g35750; F8D20.260) (Uncharacterized protein F8D20.260) locus:2128018; AT4G35750 Inherit from KOG: family member Os02g0668500 protein (Rho-GTPase-activating protein-like) (cDNA clone:J023117I15, full insert sequence),Os04g0561200 protein (cDNA clone:002-134-B10, full insert sequence),Os02g0668500 protein Q6ESR9,B7F0N7,A0A0P0VMS8 Q6ESR9_ORYSJ,B7F0N7_ORYSJ,A0A0P0VMS8_ORYSJ P0684A08.3-1 OJ1725_H08.17-1 Os02g0668500 OSNPB_020668500,Os04g0561200 OSNPB_040561200,Os02g0668500 OSNPB_020668500 ENOG411E0E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BSD BSD domain containing protein, expressed (Os11g0557300 protein) (cDNA clone:J023010D01, full insert sequence) Q2R2M4 Q2R2M4_ORYSJ LOC_Os11g35320 Os11g0557300 OSNPB_110557300 ENOG411E0E4 Q1PF01,Q8H0U2 Q1PF01_ARATH,Q8H0U2_ARATH Transmembrane protein,Plasma membrane fusion protein (Uncharacterized protein At2g12400) 59912,60280 Transmembrane protein,Plasma membrane fusion protein (Uncharacterized protein At2g12400) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506],integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2059567;,locus:2046079; AT2G25270,AT2G12400 NA Os02g0799300 protein (cDNA clone:J013000M19, full insert sequence),Os02g0799300 protein (Fragment) Q69QY7,A0A0P0VQS0 Q69QY7_ORYSJ,A0A0P0VQS0_ORYSJ Os02g0799300 Os02g0799300 OJ1695_D07.22 OSNPB_020799300,Os02g0799300 OSNPB_020799300 ENOG411E0E5 PPX1,PPX2 P48529,P48528,A0A1P8BBG2 PPX1_ARATH,PPX2_ARATH,A0A1P8BBG2_ARATH Serine/threonine-protein phosphatase PP-X isozyme 1 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP-X isozyme 2 (EC 3.1.3.16),Serine/threonine-protein phosphatase (EC 3.1.3.16) 3.1.3.16 34738,34726,39357 Serine/threonine-protein phosphatase PP-X isozyme 1 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP-X isozyme 2 (EC 3.1.3.16),Serine/threonine-protein phosphatase (EC 3.1.3.16) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plastid stroma [GO:0009532]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],plastid stroma [GO:0009532]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],phosphoprotein phosphatase activity [GO:0004721] TISSUE SPECIFICITY: Ubiquitous, mostly expressed in root mersitems, flowers, and vascular tissues. {ECO:0000269|PubMed:11197325}. locus:2116402;,locus:2161700; AT4G26720,AT5G55260 serine threonine-protein phosphatase Serine/threonine-protein phosphatase (EC 3.1.3.16) Q6EPR6 Q6EPR6_ORYSJ Os09g0284200 OJ1190_B07.8 OSJNBa0009H03.25 OSNPB_090284200 ENOG411E0E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA (Uracil-5-)-methyltransferase NA NA NA NA NA NA NA ENOG411E0E7 DRIP1,DRIP2 Q9M9Y4,Q94AY3,A0A1P8AY60,A0A1P8ARB2 DRIP1_ARATH,DRIP2_ARATH,A0A1P8AY60_ARATH,A0A1P8ARB2_ARATH E3 ubiquitin protein ligase DRIP1 (EC 2.3.2.27) (DREB2A-interacting protein 1) (RING-type E3 ubiquitin transferase DRIP1),E3 ubiquitin protein ligase DRIP2 (EC 2.3.2.27) (DREB2A-interacting protein 2) (RING-type E3 ubiquitin transferase DRIP2),DREB2A-interacting protein 2,DREB2A-interacting protein 1 DISRUPTION PHENOTYPE: No visible phenotype. Drip1 and drip2 double mutant shows delayed growth and development, but increased tolerance to drought stress, compared to wild-type. {ECO:0000269|PubMed:18552202}. There are no obvious morphological defects in the drip1-1 mutant but the drip1-1 drip 2-1 double mutant has altered gene expression levels and dehydration tolerance. In addition higher levels of GFP-DREB2A protein are observed in drip1-1 mutants than in wild type seedlings transformed with the same construct.,drip1-1 drip1-2 double mutants are developmentally delayed and bolt flower and set seed later than wild type plants. However their overall size can exceed that of wild type plants if they receive adequate water. The transcript profile of these mutants differs from wild type under normal conditions and in response to dehydration stress. Levels of numerous stress-inducible transcripts are increased in the double mutant. In addition the double mutants appear to be more tolerant to dehydration stress than wild type plants based on ion leakage assays and recovery after dehydration stress experiments.,There are no obvious morphological defects in the drip2-1 mutant but the drip1-1 drip 2-1 double mutant has altered gene expression levels and dehydration tolerance. FUNCTION: E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress. Mediates ubiquitination and subsequent proteasomal degradation of the drought-induced transcriptional activator DREB2A. Functionally redundant with DRIP2. {ECO:0000269|PubMed:18552202}.,FUNCTION: E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress. Mediates ubiquitination and subsequent proteasomal degradation of the drought-induced transcriptional activator DREB2A. Functionally redundant with DRIP1. {ECO:0000269|PubMed:18552202}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 47328,47190,37816,45394 E3 ubiquitin protein ligase DRIP1 (EC 2.3.2.27) (DREB2A-interacting protein 1) (RING-type E3 ubiquitin transferase DRIP1),E3 ubiquitin protein ligase DRIP2 (EC 2.3.2.27) (DREB2A-interacting protein 2) (RING-type E3 ubiquitin transferase DRIP2),DREB2A-interacting protein 2,DREB2A-interacting protein 1 nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567]; response to water deprivation [GO:0009414],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:18552202}. locus:2033103;,locus:2064392; AT1G06770,AT2G30580 E3 ubiquitin protein ligase Os12g0600200 protein (Fragment),Os12g0600200 protein,Os03g0632800 protein A0A0P0YBX7,A0A0P0YC56,A0A0P0YDE7,A0A0P0W0F9 A0A0P0YBX7_ORYSJ,A0A0P0YC56_ORYSJ,A0A0P0YDE7_ORYSJ,A0A0P0W0F9_ORYSJ Os12g0600200 OSNPB_120600200,Os03g0632800 OSNPB_030632800 ENOG411E0E0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-sugar transporter CMP-sialic acid transporter 3 (CMP-SA-Tr 3) (CMP-Sia-Tr 3) (CMP-sialic acid transporter-like protein 3) Q5N855 CSTR3_ORYSJ CSTLP3 Os01g0898900 LOC_Os01g67330 P0506A10.22 FUNCTION: Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi. May transport important nucleotide sugars such as CMP-Kdo (2-keto-3-deoxy-D-manno-octulosonic acid) in physiological conditions. {ECO:0000250|UniProtKB:Q654D9}. ENOG411E0E1 F4JT43,F4I759 F4JT43_ARATH,F4I759_ARATH Uncharacterized protein 64025,47363 Uncharacterized protein integral component of membrane [GO:0016021] locus:2119415;,locus:2010572; AT4G13630,AT1G04890 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411E0E2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavonoid 3'5'-hydroxylase Os03g0367200 protein (Fragment),Os03g0367101 protein (Fragment) Q0DRP1,A0A0P0VYL2 Q0DRP1_ORYSJ,A0A0P0VYL2_ORYSJ Os03g0367200 Os03g0367200 OSNPB_030367200,Os03g0367101 OSNPB_030367101 ENOG411E0E3 PLDDELTA Q9C5Y0,F4JNU6 PLDD1_ARATH,F4JNU6_ARATH Phospholipase D delta (AtPLDdelta) (PLD delta) (EC 3.1.4.4),Phospholipase D (EC 3.1.4.4) DISRUPTION PHENOTYPE: No visible phenotype when grown under standard conditions (PubMed:22932846). Loss of oleate-activated PLD activity and increased sensitivity to stress damage and to H(2)O(2)-induced cell death (PubMed:14508007). Hypersensitivity to hyperosmotic stress (PubMed:19017627). Impaired stomatal closure in response to nitric oxide donor (PubMed:22932846). Attenuated lipid degradation retarding abscisic acid (ABA)-promoted leaf senescence (PubMed:23762411). Decreased penetration resistance against non-host fungi (PubMed:23979971). No effect on ABA-induced stomatal closure (PubMed:22392280). Pldalpha1 and plddelta double mutants have a suppressed ABA-induced stomatal closure (PubMed:22392280). {ECO:0000269|PubMed:14508007, ECO:0000269|PubMed:19017627, ECO:0000269|PubMed:22392280, ECO:0000269|PubMed:22932846, ECO:0000269|PubMed:23762411, ECO:0000269|PubMed:23979971}. FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). May be involved in PA accumulation in the dehydration stress response and in the transduction of hormonal and environmental signals to the microtubules cytoskeleton (PubMed:11549769, PubMed:11489173, PubMed:12881496). Prefers phosphatidylethanolamine to phosphatidylcholine as substrate (PubMed:12397060). Involved in H(2)O(2) and abscisic acid (ABA)-induced stomatal closure (PubMed:22589465, PubMed:22392280). Involved in nitric oxide (NO) signaling during stomatal closure (PubMed:22932846). Plays a positive role in ABA-promoted senescence (PubMed:23762411). Involved in basal defense and nonhost resistance (PubMed:23979971). {ECO:0000269|PubMed:11489173, ECO:0000269|PubMed:11549769, ECO:0000269|PubMed:12397060, ECO:0000269|PubMed:12881496, ECO:0000269|PubMed:22392280, ECO:0000269|PubMed:22589465, ECO:0000269|PubMed:22932846, ECO:0000269|PubMed:23762411, ECO:0000269|PubMed:23979971}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ARA:AT4G35790-MONOMER;MetaCyc:AT4G35790-MONOMER; 3.1.4.4; 3.1.4.4 98917,79230 Phospholipase D delta (AtPLDdelta) (PLD delta) (EC 3.1.4.4),Phospholipase D (EC 3.1.4.4) membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidic acid metabolic process [GO:0046473]; phosphatidylcholine metabolic process [GO:0046470]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; programmed cell death [GO:0012501]; regulation of stomatal closure [GO:0090333]; response to cold [GO:0009409],membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers (PubMed:11706190, PubMed:11489173). Strongly expressed in the vascular tissues of cotyledons and leaves under dehydration stress conditions (PubMed:11489173). Expression is higher in old leaves than in young leaves (PubMed:11706190). Expressed in leaves and guard cells (PubMed:22932846). The isoform 2 may not be present in siliques. {ECO:0000269|PubMed:11489173, ECO:0000269|PubMed:11706190, ECO:0000269|PubMed:22932846}. locus:2125314; AT4G35790 Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Phospholipase D (EC 3.1.4.4),Os09g0543100 protein (Fragment) Q0IZX5,A0A0P0XR35,A0A0P0XQQ6 Q0IZX5_ORYSJ,A0A0P0XR35_ORYSJ,A0A0P0XQQ6_ORYSJ Os09g0543100 Os09g0543100 OSNPB_090543100,Os09g0543100 OSNPB_090543100 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ENOG411DSA8 MQD22.16 F4KIY2 F4KIY2_ARATH MraZ 152781 MraZ integral component of membrane [GO:0016021] locus:2171017; AT5G47020 glycine-rich protein Os04g0182650 protein A0A0P0W7M6 A0A0P0W7M6_ORYSJ Os04g0182650 OSNPB_040182650 ENOG411DSA4 BRI1 O22476 BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 (AtBRI1) (EC 2.7.10.1) (EC 2.7.11.1) (Brassinosteroid LRR receptor kinase) DISRUPTION PHENOTYPE: Dwarf phenotype and aberrant leaf shape. {ECO:0000269|PubMed:10557222}. Semi-fertile dwarf.,Small seedlings short petioles round/dark green/inwardly curved true leaves. Smaller compact rosettes compared to wildtype.,This allele has the same pattern of sterols and brassinosteroids as another weak allele: bri1-5.,Typical weak allele of the class: between 3 and 6 cm in height at 5 weeks of age resemble wildtype in colour; reasonably fertile although not as fertile as wildtype.,Wild type rosette. bri loss of function phenotype is suppressed.,Severe allele: extremely small with major above-ground organs reduced in size and dark-green in color. Rarely produce seeds.,One of the most fertile alleles amongst the weak bri1 mutants.,Very short internodes along the inflorescence. Wider leaves than wildtype.,Weak allele with similar phenotype as that of bri1-5 and bri1-6.,Intermediate phenotype of bri1 lines. Slightly larger and more fertile than plants with strong alleles bri1-3 and bri1-4.,Exacerbation of phenotypes observed for single mutant bri1-6: petiole length inward curling inlforescence length and rosette size.,Smaller rosettes than either parental single mutants and severely reduced stature resembling strong bri1 alleles indicating that serk3 mutation has a stronger effect on bri1-6 than serk1-1. Dwarf; Dark green; Increased branching; Completely male sterile; Late flowering; Delayed leaf senescence; Insensitive to brassinosteroids-J. Chory-1997 FUNCTION: Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity (PubMed:10557222, PubMed:10938344, PubMed:17138891, PubMed:17520012, PubMed:18694562, PubMed:19124768). Phosphorylates BSK1, BSK2 and BSK3 in vitro (PubMed:18653891). Phosphorylates BSK1, BSK3, BSK5, BSK6, BSK8 AND BSK11 in vitro (PubMed:23496207). {ECO:0000269|PubMed:10557222, ECO:0000269|PubMed:10938344, ECO:0000269|PubMed:17138891, ECO:0000269|PubMed:17520012, ECO:0000269|PubMed:18653891, ECO:0000269|PubMed:18694562, ECO:0000269|PubMed:19124768, ECO:0000269|PubMed:23496207}. MISCELLANEOUS: Binding of brassinosteroid induces intramolecular autophosphorylation of BRI1. Interaction with BAK1 activates both receptor kinases and the full activation of either receptor kinase requires transphosphorylation by their partners. Optimum in vitro phosphorylation of the substrate requires Arg or Lys residues at P-3, P-4, and P+5 (relative to the phosphorylated amino acid at P=0). Homodimerizes in the absence of ligand and binds brassinosteroid in the absence of its coreceptor BAK1.; MISCELLANEOUS: The bri1-9 mutation produces a fully active protein with a subtle conformational change that is recognized for reglucosylation by UGGT, resulting in its endoplasmic reticulum retention via Glc(1)Man(9)GlcNAc(2)-calreticulin/calnexin interaction. {ECO:0000305|PubMed:17588517}. 2.7.10.1; 2.7.11.1 130543 Protein BRASSINOSTEROID INSENSITIVE 1 (AtBRI1) (EC 2.7.10.1) (EC 2.7.11.1) (Brassinosteroid LRR receptor kinase) endosome [GO:0005768]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; steroid binding [GO:0005496]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; anther wall tapetum cell differentiation [GO:0048657]; brassinosteroid homeostasis [GO:0010268]; brassinosteroid mediated signaling pathway [GO:0009742]; detection of brassinosteroid stimulus [GO:0009729]; leaf development [GO:0048366]; microtubule bundle formation [GO:0001578]; negative regulation of cell death [GO:0060548]; pollen exine formation [GO:0010584]; positive regulation of flower development [GO:0009911]; regulation of seedling development [GO:1900140]; response to UV-B [GO:0010224]; skotomorphogenesis [GO:0009647] DEVELOPMENTAL STAGE: Expressed constitutively in either dark- or light-grown seedlings. TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:10938344, ECO:0000269|PubMed:9298904}. locus:2005498; AT4G39400 kinase protein binding protein heterodimerization protein homodimerization protein kinase protein serine threonine kinase Brassinosteroid LRR receptor kinase BRI1 (EC 2.7.11.1) (Protein BRASSINOSTEROID INSENSITIVE 1 homolog) (OsBRI1) (Protein DWARF 61),Os01g0718300 protein (Fragment) Q942F3,A0A0P0V7F7 BRI1_ORYSJ,A0A0P0V7F7_ORYSJ BRI1 D61 Os01g0718300 LOC_Os01g52050 P0480C01.18-1,Os01g0718300 OSNPB_010718300 DISRUPTION PHENOTYPE: Dwarf plants due to the lack of internode elongation. Insensitivity to brassinolide. {ECO:0000269|PubMed:11006334}. FUNCTION: Receptor kinase involved brassinosteroid (BR) signal transduction. Regulates, in response to BR binding, a signaling cascade involved in plant development, promotion of cell elongation and flowering (Probable). Activates BR signaling by targeting and phosphorylating BSK3, a positive regulator of BR signaling (PubMed:26697897). Forms at the plasma membrane a receptor complex with BAK1 which is activated in response to brassinolide. Phosphorylates BAK1. Phosphorylates REM4.1, which reduces REM4.1 binding affinity to BAK1 and allows the formation and subsequent activation of the BRI1-BAK1 receptor complex (PubMed:27424498). Functions in various growth and developmental processes, such as internode elongation, bending of the lamina joint and skotomorphogenesis. Functions in internode elongation by inducing the formation of the intercalary meristem and the longitudinal elongation of internode cells (PubMed:11006334). Involved in organ development through the control of cell division and elongation. Does not seem essential for organ pattern formation or organ initiation (PubMed:16407447). {ECO:0000269|PubMed:11006334, ECO:0000269|PubMed:16407447, ECO:0000269|PubMed:26697897, ECO:0000269|PubMed:27424498, ECO:0000305|PubMed:11006334, ECO:0000305|PubMed:16407447}. ENOG411DSA6 PME20,PME41,PME7 O22256,Q8RXK7,Q9SRX4 PME20_ARATH,PME41_ARATH,PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 20 [Includes: Pectinesterase inhibitor 20 (Pectin methylesterase inhibitor 20); Pectinesterase 20 (PE 20) (EC 3.1.1.11) (Pectin methylesterase 20) (AtPME20)],Probable pectinesterase/pectinesterase inhibitor 41 [Includes: Pectinesterase inhibitor 41 (Pectin methylesterase inhibitor 41); Pectinesterase 41 (PE 41) (EC 3.1.1.11) (AtPMEpcrB) (Pectin methylesterase 41) (AtPME41)],Probable pectinesterase/pectinesterase inhibitor 7 [Includes: Pectinesterase inhibitor 7 (Pectin methylesterase inhibitor 7); Pectinesterase 7 (PE 7) (EC 3.1.1.11) (Pectin methylesterase 1) (AtPME1) (Pectin methylesterase 7)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT2G47550-MONOMER;,ARA:AT4G02330-MONOMER;,ARA:AT1G02810-MONOMER; 3.1.1.11 61497,63944,63952 Probable pectinesterase/pectinesterase inhibitor 20 [Includes: Pectinesterase inhibitor 20 (Pectin methylesterase inhibitor 20); Pectinesterase 20 (PE 20) (EC 3.1.1.11) (Pectin methylesterase 20) (AtPME20)],Probable pectinesterase/pectinesterase inhibitor 41 [Includes: Pectinesterase inhibitor 41 (Pectin methylesterase inhibitor 41); Pectinesterase 41 (PE 41) (EC 3.1.1.11) (AtPMEpcrB) (Pectin methylesterase 41) (AtPME41)],Probable pectinesterase/pectinesterase inhibitor 7 [Includes: Pectinesterase inhibitor 7 (Pectin methylesterase inhibitor 7); Pectinesterase 7 (PE 7) (EC 3.1.1.11) (Pectin methylesterase 1) (AtPME1) (Pectin methylesterase 7)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490]; response to brassinosteroid [GO:0009741]; response to cold [GO:0009409]; response to fungus [GO:0009620] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in flowers, siliques, floral stems and rosettes leaves. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:9767082}.,TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2062013;,locus:2133224;,locus:2024750; AT2G47550,AT4G02330,AT1G02810 pectinesterase Pectinesterase (EC 3.1.1.11),Os01g0311800 protein (Pectin methylesterase PME1-like protein) Q8LQA0,Q655Q3,A0A0P0WLF6 Q8LQA0_ORYSJ,Q655Q3_ORYSJ,A0A0P0WLF6_ORYSJ B1011A07.12-1 Os01g0311800 OSNPB_010311800,B1011A07.12-2 Os01g0311800 OSNPB_010311800,Os05g0361500 OSNPB_050361500 ENOG411DSA0 PSD Q7PC79 XPOT_ARATH Exportin-T (Exportin(tRNA)) (Protein PAUSED) (tRNA exportin) DISRUPTION PHENOTYPE: Delayed leaf formation during vegetative development, abnormal SAM layered structure, altered inflorescences, disrupted phyllotaxy, reduced number of seeds and reduced number of lateral roots. {ECO:0000269|PubMed:12913148, ECO:0000269|PubMed:12913168}. Delayed leaf growth; Few lateral roots; Abnormal phyllotaxy; Reduced fertility-X. Chen-2003 FUNCTION: Probable tRNA nucleus export receptor which regulates tRNA processing and facilitates tRNA translocation across the nuclear pore complex. Is required for proper activity of the shoot apical meristem (SAM) and correct leaf initiation at different developmental stages, and may play a role in floral patterning. {ECO:0000269|PubMed:12913148, ECO:0000269|PubMed:12913168, ECO:0000269|PubMed:15738428}. 111462 Exportin-T (Exportin(tRNA)) (Protein PAUSED) (tRNA exportin) cytosol [GO:0005829]; nuclear matrix [GO:0016363]; nucleocytoplasmic transporter activity [GO:0005487]; Ran GTPase binding [GO:0008536]; tRNA binding [GO:0000049]; flower development [GO:0009908]; meristem initiation [GO:0010014]; tRNA export from nucleus [GO:0006409]; tRNA processing [GO:0008033]; tRNA re-export from nucleus [GO:0071528] TISSUE SPECIFICITY: Expressed in young leaves, growing leaf blades, young floral organs and root tips. {ECO:0000269|PubMed:12913148}. locus:2030280; AT1G72560 tRNA binding Exportin-T (Exportin(tRNA)) (Protein PAUSED homolog) (tRNA exportin),Os07g0613300 protein (Fragment) Q8H3A7,A0A0P0X927 XPOT_ORYSJ,A0A0P0X927_ORYSJ Os07g0613300 LOC_Os07g42180 OJ1003_H02.130 P0616D06.103,Os07g0613300 OSNPB_070613300 DISRUPTION PHENOTYPE: Reduced size in non-mature plants, delayed panicle heading, reduced seed number and low seed fertility. {ECO:0000269|PubMed:18850055}. FUNCTION: Probable tRNA nucleus export receptor which regulates tRNA processing and facilitates tRNA translocation across the nuclear pore complex. Is required for correct leaf initiation at different developmental stages and may play a role in floral patterning. {ECO:0000269|PubMed:18850055}. ENOG411DSA2 COBL2; COBL3,COB,COBL1,COBL4,IRX6 Q8L8Q7,Q94KT8,Q9SRT7,Q9LFW3,A0A1P8BE86,A0A1P8BE64,A0A1P8BE63,A0A1P8BCB5 COBL2_ARATH,COBRA_ARATH,COBL1_ARATH,COBL4_ARATH,A0A1P8BE86_ARATH,A0A1P8BE64_ARATH,A0A1P8BE63_ARATH,A0A1P8BCB5_ARATH COBRA-like protein 2,Protein COBRA (Cell expansion protein),COBRA-like protein 1,COBRA-like protein 4,COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family Callus-induced roots from the mutant displayed the mutant phenotype when they grew under restrictive conditions. All the mutants responded to a gravitropic stimulus in a manner similar to wild type although the change of the direction of growth was slower than wild type.,When grown on media containing 0.5% sucrose the mutant had reduced root length but no apparent radial cell expansion.,Dark grown hypocotyls have reduced length compared to wild type. Root cells appear swollen and have abnormal radial expansion. Epidermal cells bulge. Cotyledon and hypocotyls are smaller and thicker than wild type. Cellulose microfibrils are randomly oriented. Abnormal cell expansion orientation; Reduced crystalline cellulose in root-P. Benfey-2001 FUNCTION: Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. MISCELLANEOUS: A partial protein missing the N-terminal signal peptide was reported to complement a yeast mutant defective in phytochelatin synthesis. It is therefore possible that COBRA binds divalent metals. 49697,51203,50363,48515,42866,38291,44250,46024 COBRA-like protein 2,Protein COBRA (Cell expansion protein),COBRA-like protein 1,COBRA-like protein 4,COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; Golgi apparatus [GO:0005794]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; plant-type cell wall biogenesis [GO:0009832]; plant-type cell wall cellulose biosynthetic process [GO:0052324]; plant-type cell wall organization [GO:0009664]; seed coat development [GO:0010214]; seed development [GO:0048316],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; external side of plasma membrane [GO:0009897]; lateral plasma membrane [GO:0016328]; longitudinal side of cell surface [GO:0009930]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; cellulose microfibril organization [GO:0010215]; multidimensional cell growth [GO:0009825]; response to salt stress [GO:0009651],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215]; plant-type secondary cell wall biogenesis [GO:0009834],anchored component of membrane [GO:0031225]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215],anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12376623}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Up-regulated in the root zone of rapid longitudinal expansion. {ECO:0000269|PubMed:11331607, ECO:0000269|PubMed:12376623}. locus:2086601;,locus:2173532;,locus:2076507;,locus:2143151; AT3G29810,AT5G60920,AT3G02210,AT5G15630 cobra-like protein COBRA-like protein 2 (Protein BRITTLE CULM1-like 2),COBRA-like protein 3 (Protein BRITTLE CULM1-like 4),COBRA-like protein 4 (Protein BRITTLE CULM1-like 9),COBRA-like protein 1 (Protein BRITTLE CULM1-like 6),COBRA-like protein 5 (Protein BRITTLE CULM1),COBRA-like protein 6 (Protein BRITTLE CULM1-like 7),Os10g0497700 protein (Fragment),Os03g0416300 protein (Fragment),Os05g0386800 protein (Fragment),Os03g0754500 protein Q75IW1,Q60E70,Q8W3E8,Q6Z4G8,Q10JL1,Q6Z4G7,A0A0P0XVX5,A0A0N7KHF9,A0A0P0WLU6,A0A0P0W3S4 COBL2_ORYSJ,COBL3_ORYSJ,COBL4_ORYSJ,COBL1_ORYSJ,COBL5_ORYSJ,COBL6_ORYSJ,A0A0P0XVX5_ORYSJ,A0A0N7KHF9_ORYSJ,A0A0P0WLU6_ORYSJ,A0A0P0W3S4_ORYSJ BC1L2 Os03g0416300 LOC_Os03g30260 OsJ_11271 OSJNBb0059G13.19,BC1L4 Os05g0386800 LOC_Os05g32110 OSJNBa0073E05.6,BC1L9 Os10g0497700 LOC_Os10g35460 OsJ_32037 OSJNBa0017E08.5,BC1L6 Os07g0604300 LOC_Os07g41310 OsJ_25037 OSJNBb0040H10.12,BC1 Os03g0416200 LOC_Os03g30250 OsJ_010811 OSJNBb0059G13.18,BC1L7 Os07g0604400 LOC_Os07g41320 OsJ_25038 OSJNBb0040H10.13,Os10g0497700 OSNPB_100497700,Os03g0416300 OSNPB_030416300,Os05g0386800 OSNPB_050386800,Os03g0754500 OSNPB_030754500 FUNCTION: Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface (By similarity). {ECO:0000250}.,FUNCTION: Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. {ECO:0000269|PubMed:12953108}. ENOG411DSAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ELMO/CED-12 family OSJNBb0038F03.14 protein (Os04g0545100 protein) (cDNA clone:J023098H22, full insert sequence) Q7XMZ7 Q7XMZ7_ORYSJ Os04g0545100 Os04g0545100 OSJNBb0038F03.14 OSNPB_040545100 ENOG411DSAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411DSAJ MAJ23.10 Q8L775,Q5XEP8,A0A1P8BF19 Q8L775_ARATH,Q5XEP8_ARATH,A0A1P8BF19_ARATH At5g24870 (RING finger-like protein) (RING/U-box superfamily protein),At5g10650 (RING/U-box superfamily protein),RING/U-box superfamily protein 56792,57071,54355 At5g24870 (RING finger-like protein) (RING/U-box superfamily protein),At5g10650 (RING/U-box superfamily protein),RING/U-box superfamily protein locus:2149378;,locus:2159634; AT5G24870,AT5G10650 zinc finger C3HC4 type domain containing protein expressed Os06g0695600 protein (Putative DNA binding zinc finger protein) (cDNA clone:J013058N02, full insert sequence),Os02g0150700 protein (Fragment),Os02g0150450 protein Q5Z8H4,A0A0P0VES7,A0A0P0VEX1 Q5Z8H4_ORYSJ,A0A0P0VES7_ORYSJ,A0A0P0VEX1_ORYSJ Os06g0695600 OsJ_22486 OSNPB_060695600 P0622F03.23,Os02g0150700 OSNPB_020150700,Os02g0150450 OSNPB_020150450 ENOG411DSAK PCMP-E57 Q9C501 PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350 60474 Pentatricopeptide repeat-containing protein At1g33350 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2006927; AT1G33350 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DSAE XPD Q8W4M7 ERCC2_ARATH DNA repair helicase XPD (EC 3.6.4.12) (ERCC2 homolog) (RAD3 homolog) (UV hypersensitive protein 6) (AtUVH6) (XPD homolog) (AtXPD) Null: No homozygous mutant plants recovered; Knockdown: Pale green leaves; Dwarf; Sensitive to UV light-J. Hall-2003 FUNCTION: ATP-dependent 5'-3' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATP-dependent helicase activity of XPD is required for DNA opening. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. XPD acts by forming a bridge between CAK and the core-TFIIH complex (By similarity). Essential during plant growth (PubMed:12857822). May negatively regulate a common response program mediated by UV damage and heat stress, that leads to tissue death and reduced chloroplast function (PubMed:9414549). {ECO:0000250|UniProtKB:P18074, ECO:0000269|PubMed:12857822, ECO:0000269|PubMed:9414549}. R-ATH-113418;R-ATH-5696395;R-ATH-5696400;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 3.6.4.12 86236 DNA repair helicase XPD (EC 3.6.4.12) (ERCC2 homolog) (RAD3 homolog) (UV hypersensitive protein 6) (AtUVH6) (XPD homolog) (AtXPD) nucleus [GO:0005634]; 4 iron, 4 sulfur cluster binding [GO:0051539]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; DNA repair [GO:0006281]; nucleotide-excision repair [GO:0006289]; regulation of transcription, DNA-templated [GO:0006355]; response to heat [GO:0009408]; response to UV [GO:0009411]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed at low levels in all tissues. {ECO:0000269|PubMed:12857822}. locus:2014525; AT1G03190 DNA repair helicase Os05g0144800 protein (Putative nucleotide excision repair protein XP-D) Q6AUI3 Q6AUI3_ORYSJ Os05g0144800 Os05g0144800 OsJ_17093 OSJNBb0015A05.1 OSNPB_050144800 ENOG411DSAX ASN2,ASN3,ASN1 Q9LV77,Q9LFU1,P49078,F4KGS3,F4JBH6,F4JBH5,A0A1I9LPY0 ASNS2_ARATH,ASNS3_ARATH,ASNS1_ARATH,F4KGS3_ARATH,F4JBH6_ARATH,F4JBH5_ARATH,A0A1I9LPY0_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 2),Asparagine synthetase [glutamine-hydrolyzing] 3 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 3),Asparagine synthetase [glutamine-hydrolyzing] 1 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) (Protein DARK INDUCIBLE 6),Asparagine synthetase 3,Glutamine-dependent asparagine synthase 1 DISRUPTION PHENOTYPE: Pale green leaf phenotype and reduction of biomass in mature plants. Increased levels of asparagine, proline and ammonium in response to salt treatment. {ECO:0000269|PubMed:21478030, ECO:0000269|PubMed:22789031}. FUNCTION: Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem. {ECO:0000269|PubMed:22789031}.,FUNCTION: Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem. {ECO:0000250}.,FUNCTION: Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem. {ECO:0000269|PubMed:12805621}. MISCELLANEOUS: Plants over-expressing ASN1 have increased content of free amino acids (mainly Asn) in flowers, siliques and seeds. {ECO:0000305|PubMed:12805621}. PATHWAY: Amino-acid biosynthesis; L-asparagine biosynthesis.,PATHWAY: Amino-acid biosynthesis; L-asparagine biosynthesis; L-asparagine from L-aspartate (L-Gln route): step 1/1. R-ATH-70614; 6.3.5.4 65030,65227,65621,65033,51289,58263,38163 Asparagine synthetase [glutamine-hydrolyzing] 2 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 2),Asparagine synthetase [glutamine-hydrolyzing] 3 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 3),Asparagine synthetase [glutamine-hydrolyzing] 1 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) (Protein DARK INDUCIBLE 6),Asparagine synthetase 3,Glutamine-dependent asparagine synthase 1 cytosol [GO:0005829]; plasmodesma [GO:0009506]; asparagine synthase (glutamine-hydrolyzing) activity [GO:0004066]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; ammonium ion metabolic process [GO:0097164]; glutamine metabolic process [GO:0006541]; hyperosmotic salinity response [GO:0042538]; L-asparagine biosynthetic process [GO:0070981]; response to absence of light [GO:0009646],cytosol [GO:0005829]; asparagine synthase (glutamine-hydrolyzing) activity [GO:0004066]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; glutamine metabolic process [GO:0006541]; L-asparagine biosynthetic process [GO:0070981]; response to absence of light [GO:0009646],asparagine synthase (glutamine-hydrolyzing) activity [GO:0004066]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; asparagine biosynthetic process [GO:0006529]; cellular amino acid catabolic process [GO:0009063]; cellular response to sucrose starvation [GO:0043617]; glutamine metabolic process [GO:0006541]; L-asparagine biosynthetic process [GO:0070981]; response to absence of light [GO:0009646]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to sucrose [GO:0009744],asparagine synthase (glutamine-hydrolyzing) activity [GO:0004066]; ATP binding [GO:0005524]; asparagine biosynthetic process [GO:0006529]; glutamine metabolic process [GO:0006541],asparagine synthase (glutamine-hydrolyzing) activity [GO:0004066]; asparagine biosynthetic process [GO:0006529] TISSUE SPECIFICITY: Expressed in the vascular region adjacent to leaf mesophyll cells in the companion cell-sieve tube element complex. {ECO:0000269|PubMed:22789031, ECO:0000269|PubMed:9881155}. locus:2177694;,locus:2145377;,locus:2099580; AT5G65010,AT5G10240,AT3G47340 asparagine synthetase Asparagine synthetase [glutamine-hydrolyzing] 2 (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Q43011 ASNS2_ORYSJ Os06g0265000 LOC_Os06g15420 OJ1001_B06.12 FUNCTION: Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem. {ECO:0000250}. ENOG411DSAZ Q9SS53,A0A1P8AMZ1,A0A1P8AMZ6,F4I9U0 Q9SS53_ARATH,A0A1P8AMZ1_ARATH,A0A1P8AMZ6_ARATH,F4I9U0_ARATH DNA mismatch repair protein MutS, type 2 (F16G16.7 protein),DNA mismatch repair protein MutS, type 2 96921,70877,95241,94575 DNA mismatch repair protein MutS, type 2 (F16G16.7 protein),DNA mismatch repair protein MutS, type 2 mismatch repair complex [GO:0032300]; nucleus [GO:0005634]; ATP binding [GO:0005524]; damaged DNA binding [GO:0003684]; DNA-dependent ATPase activity [GO:0008094]; endonuclease activity [GO:0004519]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298]; negative regulation of DNA recombination [GO:0045910],ATP binding [GO:0005524]; ATPase activity [GO:0016887]; endonuclease activity [GO:0004519]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298]; negative regulation of DNA recombination [GO:0045910] locus:2015008; AT1G65070 DNA mismatch repair protein muts2 Os04g0680700 protein (cDNA clone:002-134-E06, full insert sequence),Os04g0680700 protein B7F0P5,Q0J8Y6 B7F0P5_ORYSJ,Q0J8Y6_ORYSJ Os04g0680700 OSNPB_040680700,Os04g0680700 Os04g0680700 OSNPB_040680700 ENOG411DSAT F6D8.36,1g52420 Q9SSP6,Q9LSB5 Q9SSP6_ARATH,Q9LSB5_ARATH At1g52420 (F6D8.36 protein) (Glycosyl transferase, putative) (Glycosyl transferase, putative; 4406-2038) (Glycosyltransferase) (Putative glycosyl transferase) (UDP-Glycosyltransferase superfamily protein),AT3g15940/MVC8_7 (Glycosyl transferases-like protein) (Glycosyltransferase) (Putative glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) 75636,78707 At1g52420 (F6D8.36 protein) (Glycosyl transferase, putative) (Glycosyl transferase, putative; 4406-2038) (Glycosyltransferase) (Putative glycosyl transferase) (UDP-Glycosyltransferase superfamily protein),AT3g15940/MVC8_7 (Glycosyl transferases-like protein) (Glycosyltransferase) (Putative glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2018144;,locus:2093925; AT1G52420,AT3G15940 glycosyl transferase family 1 protein NA NA NA NA NA NA NA ENOG411DSAV ARID2 Q9LDD4 ARID2_ARATH AT-rich interactive domain-containing protein 2 (ARID domain-containing protein 2) (ARID and ELM2 domain-containing protein 2) 65666 AT-rich interactive domain-containing protein 2 (ARID domain-containing protein 2) (ARID and ELM2 domain-containing protein 2) nucleus [GO:0005634]; vacuole [GO:0005773]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2123061; AT4G11400 domain--containing protein Os04g0166400 protein (Fragment) A0A0P0W785 A0A0P0W785_ORYSJ Os04g0166400 OSNPB_040166400 ENOG411E4NB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os05g0454500 protein (cDNA clone:J033101G01, full insert sequence) Q60EN2 Q60EN2_ORYSJ Os05g0454500 Os05g0454500 OJ1651_D06.1 OsJ_18770 OSNPB_050454500 ENOG411E8VT CLE44 Q941C5 CLE44_ARATH CLAVATA3/ESR (CLE)-related protein 44 (Tracheary element differentiation inhibitory factor-like protein) (TDIF-like protein) [Cleaved into: CLE44p] FUNCTION: Extracellular signal peptide that regulates cell fate. May act with TDR as a ligand-receptor pair in a signal transduction pathway that represses tracheary element differentiation but promotes the formation of procambial cells adjacent to phloem cells in the veins. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:16902140, ECO:0000269|PubMed:18812507}. 12522 CLAVATA3/ESR (CLE)-related protein 44 (Tracheary element differentiation inhibitory factor-like protein) (TDIF-like protein) [Cleaved into: CLE44p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; axillary shoot meristem initiation [GO:0090506]; cell-cell signaling involved in cell fate commitment [GO:0045168]; phloem or xylem histogenesis [GO:0010087]; procambium histogenesis [GO:0010067]; xylem development [GO:0010089] TISSUE SPECIFICITY: Mostly expressed in flowers and leaves. Widely expressed along the vascular strands. In roots and hypocotyls, present in endodermal cells as well as cells in the phloem and the adjacent pericycle. {ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:18812507}. locus:505006439; AT4G13195 CLAVATA3 ESR (CLE)-related protein TDIF-like NA NA NA NA NA NA NA ENOG411EC9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC9N A0A1I9LT53,F4JBT8,F4JBU0 A0A1I9LT53_ARATH,F4JBT8_ARATH,F4JBU0_ARATH Phosphoglycerate mutase family protein 28696,31180,32337 Phosphoglycerate mutase family protein integral component of membrane [GO:0016021],chloroplast [GO:0009507] locus:2103361; AT3G60420,AT3G60440 Pfam:PGAM NA NA NA NA NA NA NA ENOG411EC9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-galactopyranose mutase NA NA NA NA NA NA NA ENOG411EC9C RDL2,RDL3,RD21C Q9LT77,Q9LXW3,Q9LT78,F4JB71 RDL2_ARATH,RDL3_ARATH,RD21C_ARATH,F4JB71_ARATH Probable cysteine protease RDL2 (EC 3.4.22.-) (Probable cysteine proteinase At3g19400) (RD21A-like protease 2),Probable cysteine protease RDL3 (EC 3.4.22.-) (Probable cysteine proteinase At3g43960) (RD21A-like protease 3),Probable cysteine protease RD21C (EC 3.4.22.-),Cysteine proteinases superfamily protein DISRUPTION PHENOTYPE: Decreased root hair length under phosphate deficiency. {ECO:0000269|PubMed:21248074}. FUNCTION: Probable thiol protease. {ECO:0000250|UniProtKB:P43297}. 3.4.22.- 40290,41541,49308,32612 Probable cysteine protease RDL2 (EC 3.4.22.-) (Probable cysteine proteinase At3g19400) (RD21A-like protease 2),Probable cysteine protease RDL3 (EC 3.4.22.-) (Probable cysteine proteinase At3g43960) (RD21A-like protease 3),Probable cysteine protease RD21C (EC 3.4.22.-),Cysteine proteinases superfamily protein cytosol [GO:0005829]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603],anchored component of membrane [GO:0031225]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603]; root hair elongation [GO:0048767],cysteine-type peptidase activity [GO:0008234] TISSUE SPECIFICITY: Expressed in root hairs. {ECO:0000269|PubMed:21248074}. locus:2090629;,locus:2097104;,locus:2090614; AT3G19400,AT3G43960,AT3G19390 GRAN NA NA NA NA NA NA NA ENOG411EC9B PIP1:4,PIP1B F4JHB6,A8MRW1 F4JHB6_ARATH,A8MRW1_ARATH Plasma membrane intrinsic protein 14,Plasma membrane intrinsic protein 1B 23328,32455 Plasma membrane intrinsic protein 14,Plasma membrane intrinsic protein 1B integral component of membrane [GO:0016021]; transporter activity [GO:0005215],anchored component of plasma membrane [GO:0046658]; chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; water channel activity [GO:0015250]; carbon dioxide transport [GO:0015670]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; water transport [GO:0006833] locus:2050649; AT4G00430,AT2G45960 Major intrinsic protein Aquaporin PIP1-1 (OsPIP1;1) (Plasma membrane intrinsic protein 1-1) (Plasma membrane intrinsic protein 1a) (PIP1a) (Water channel protein RWC1) (RWC-1) Q6EU94 PIP11_ORYSJ PIP1-1 PIP1A RWC1 Os02g0666200 LOC_Os02g44630 OJ1486_E07.10 OsJ_007594 P0461B08.25 FUNCTION: May function as water channel to facilitate the transport of water across cell membrane. {ECO:0000269|PubMed:10725557}. MISCELLANEOUS: Recovery of PIP1.1 expression after chilling is increased by pretreatment with mannitol. ENOG411EC9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC9G O80570 O80570_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At2g44000) (Uncharacterized protein At2g44000/F6E13.13) 23933 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein At2g44000) (Uncharacterized protein At2g44000/F6E13.13) integral component of membrane [GO:0016021] locus:2051774; AT2G44000 Has 34 Blast hits to 34 proteins in 4 species Archae - 0 NA NA NA NA NA NA NA ENOG411EC9F DAR5,DAR7,DAR6 Q84WJ0,Q9FJX9,Q9FJX8,A0A1P8B9V9,A0A1P8BDU0,A0A1P8B9X5,F4K0N7 DAR5_ARATH,DAR7_ARATH,DAR6_ARATH,A0A1P8B9V9_ARATH,A0A1P8BDU0_ARATH,A0A1P8B9X5_ARATH,F4K0N7_ARATH Protein DA1-related 5,Protein DA1-related 7,Protein DA1-related 6,DA1-related protein 6,DA1-related protein 7 FUNCTION: Ubiquitin receptor that probably regulates developmental process. {ECO:0000250}. 80246,64041,73646,72766,49083,58448,66960 Protein DA1-related 5,Protein DA1-related 7,Protein DA1-related 6,DA1-related protein 6,DA1-related protein 7 ADP binding [GO:0043531]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; ubiquitin binding [GO:0043130],metal ion binding [GO:0046872] locus:2154890;,locus:2154880;,locus:2154865; AT5G66630,AT5G66610,AT5G66620 Protein of unknown function (DUF3633) NA NA NA NA NA NA NA ENOG411EC9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR Os07g0566800 protein (TIR/P-loop/LRR disease resistance protein-like protein) (cDNA clone:002-153-D12, full insert sequence) Q7XIJ6 Q7XIJ6_ORYSJ OJ1773_H01.131 OJ1092_A07.109 Os07g0566800 OSNPB_070566800 ENOG411EC9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os08g0476200 protein A0A0P0XHP1 A0A0P0XHP1_ORYSJ Os08g0476200 OSNPB_080476200 ENOG411EC9X UPS5 Q93Z75,B9DH85,A0A1P8ARD4,A0A1P8ARD7,F4IE73 UPS5_ARATH,B9DH85_ARATH,A0A1P8ARD4_ARATH,A0A1P8ARD7_ARATH,F4IE73_ARATH Ureide permease 5 (AtUPS5),AT1G26440 protein (Ureide permease 5),Ureide permease 5 FUNCTION: Proton-coupled transporter that transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Mediates transport of uracil and 5-fluorouracil (a toxic uracil analog). {ECO:0000269|PubMed:16738859}.; FUNCTION: Proton-coupled transporter that transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, xanthine and uracil. {ECO:0000269|PubMed:16738859}. 44621,38337,36703,33326,41145 Ureide permease 5 (AtUPS5),AT1G26440 protein (Ureide permease 5),Ureide permease 5 integral component of membrane [GO:0016021]; allantoin uptake transmembrane transporter activity [GO:0005274]; ATP binding [GO:0005524]; uracil transmembrane transporter activity [GO:0015210]; xanthine transmembrane transporter activity [GO:0042907],integral component of membrane [GO:0016021]; nitrogen compound transport [GO:0071705] TISSUE SPECIFICITY: Expressed in lateral roots, rosette leaves, stems, stipules, flower stigma, pedicels and the connective tissue between pollen sacks. {ECO:0000269|PubMed:16738859}. locus:2197995; AT1G26440 Pfam:FAE_3-kCoA_syn1 NA NA NA NA NA NA NA ENOG411EC9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os07g0469701 protein (Fragment) A0A0P0X5M9 A0A0P0X5M9_ORYSJ Os07g0469701 OSNPB_070469701 ENOG411EC9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EC9Q Q0WRX5 Q0WRX5_ARATH HSP40/DnaJ peptide-binding protein (Uncharacterized protein At1g44160) R-ATH-3371453;R-ATH-3371568;R-ATH-3371571; 40069 HSP40/DnaJ peptide-binding protein (Uncharacterized protein At1g44160) unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2205856; AT1G44160 DNAJ chaperone C-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411EC9P F15B8.110 Q9SVY4,F4J3H7 Q9SVY4_ARATH,F4J3H7_ARATH Protein kinase superfamily protein (Protein kinase-like protein),Protein kinase superfamily protein 39051,30291 Protein kinase superfamily protein (Protein kinase-like protein),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]; cell surface receptor signaling pathway [GO:0007166] locus:2076596;,locus:2076616; AT3G57700,AT3G57770 STYKc NA NA NA NA NA NA NA ENOG411EC9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA May be involved in modulation of pathogen defense and leaf cell death (By similarity) NA NA NA NA NA NA NA ENOG411EC9V ARR19 Q9M9B9 ARR19_ARATH Putative two-component response regulator ARR19 FUNCTION: Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. 46155 Putative two-component response regulator ARR19 nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay response regulator activity [GO:0000156]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Detected in trichomes and siliques. {ECO:0000269|PubMed:15173562}. locus:2028476; AT1G49190 two-component response regulator NA NA NA NA NA NA NA ENOG411EC9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BT1 family NA NA NA NA NA NA NA ENOG411EC9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0668800 protein,Os11g0669200 protein B9G8M8,A0A0P0Y5M9 B9G8M8_ORYSJ,A0A0P0Y5M9_ORYSJ Os11g0668800 OsJ_34689 OSNPB_110668800,Os11g0669200 OSNPB_110669200 ENOG411EC99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411EC93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin superfamily protein NA NA NA NA NA NA NA ENOG411EC91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY NA NA NA NA NA NA NA ENOG411EC96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Structural maintenance of chromosomes NA NA NA NA NA NA NA ENOG411EC94 Q9LJA2 Q9LJA2_ARATH Anthocyanin acyltransferase-like protein (HXXXD-type acyl-transferase family protein) ARA:AT3G29635-MONOMER; 51158 Anthocyanin acyltransferase-like protein (HXXXD-type acyl-transferase family protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2093645; AT3G29635 Transferase family NA NA NA NA NA NA NA ENOG411E4NV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NA NA NA NA NA NA NA ENOG411DQEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os04g0561800 protein A0A0N7KJI1 A0A0N7KJI1_ORYSJ Os04g0561800 OSNPB_040561800 ENOG411DQEH DYAD,SWI1 Q9FGN8,A0A1P8BGB3 DYAD_ARATH,A0A1P8BGB3_ARATH Protein DYAD (Protein SWITCH 1),SWITCH1 DISRUPTION PHENOTYPE: Plants contain 2 cells with prominent nuclei in the central region of the ovule where the embryo sac is normally located. Sometimes, an unreduced diploid female gamete, arising from apomeiosis, can be fertilized by a haploid male gamete, leading to a viable triploid embryo. {ECO:0000269|PubMed:11459834}. Sterile due to defects in meiosis; Reduced sister chromatid cohesion-C. Horlow-2001 FUNCTION: Required for fertility. Involved in chromatid cohesion establishment, in chromosome structure during male and female meiosis (e.g. the synapse formation between homologous chromosomes, the recombination, and the cohesion of both chromatid arm and centromere), and in axial element formation. Regulates the switch from mitosis to the reductional meiosis division of megaspores prior to the female gametogenesis (megasporogenesis). {ECO:0000269|PubMed:10654613, ECO:0000269|PubMed:11459834, ECO:0000269|PubMed:12135930, ECO:0000269|PubMed:12783800, ECO:0000269|PubMed:18272967, ECO:0000269|Ref.6}. 72731,72325 Protein DYAD (Protein SWITCH 1),SWITCH1 nucleus [GO:0005634]; female meiosis sister chromatid cohesion [GO:0007066]; male meiosis sister chromatid cohesion [GO:0007065]; multicellular organism development [GO:0007275]; reciprocal meiotic recombination [GO:0007131] TISSUE SPECIFICITY: Meiocytes (at protein level). {ECO:0000269|PubMed:11459834, ECO:0000269|PubMed:12135930, ECO:0000269|PubMed:12783800}. locus:2163645; AT5G51330 NA Expressed protein (Meiosis protein, putative, expressed) (Os03g0650400 protein) Q53KW9,Q53KW8 Q53KW9_ORYSJ,Q53KW8_ORYSJ Os03g0650400 LOC_Os03g44760 Os03g0650400 OSNPB_030650400,Os03g0650400 LOC_Os03g44760 OSNPB_030650400 ENOG411DQEI Q0WQB7 Q0WQB7_ARATH Elongation factor Ts (DUF810) (Uncharacterized protein At2g25800) 109964 Elongation factor Ts (DUF810) (Uncharacterized protein At2g25800) translation elongation factor activity [GO:0003746] locus:2043515; AT2G25800 Protein of unknown function (DUF810) Os09g0346700 protein (cDNA clone:J023062D09, full insert sequence),Os09g0346700 protein (Fragment) Q6ES98,A0A0P0XL03 Q6ES98_ORYSJ,A0A0P0XL03_ORYSJ P0512H04.9-1 Os09g0346700 OsJ_28994 OSNPB_090346700,Os09g0346700 OSNPB_090346700 ENOG411DQEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411DQEE O23207 FQRL2_ARATH Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 (EC 1.6.5.2) FUNCTION: Catalyzes the transfer of electrons from NADH and NADPH to reduce quinone to the hydroquinone state. {ECO:0000250|UniProtKB:Q9LSQ5}. ARA:AT4G36750-MONOMER; 1.6.5.2 28754 Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 (EC 1.6.5.2) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; FMN binding [GO:0010181]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955] locus:2115405; AT4G36750 minor allergen Alt a Os10g0436800 protein A0A0P0XV01 A0A0P0XV01_ORYSJ Os10g0436800 OSNPB_100436800 ENOG411DQE8 GDPDL7,GDPDL6 Q9LVN0,Q9FGT9 GPDL7_ARATH,GPDL6_ARATH Glycerophosphodiester phosphodiesterase GDPDL7 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 7) (ATGDPDL7) (Glycerophosphodiesterase-like 6) (Protein SHV3-LIKE 5),Glycerophosphodiester phosphodiesterase GDPDL6 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 6) (ATGDPDL6) (Glycerophosphodiesterase-like 5) (Protein SHV3-LIKE 4) 3.1.4.46 80038,80902 Glycerophosphodiester phosphodiesterase GDPDL7 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 7) (ATGDPDL7) (Glycerophosphodiesterase-like 6) (Protein SHV3-LIKE 5),Glycerophosphodiester phosphodiesterase GDPDL6 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase-like 6) (ATGDPDL6) (Glycerophosphodiesterase-like 5) (Protein SHV3-LIKE 4) anchored component of membrane [GO:0031225]; apoplast [GO:0048046]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629],anchored component of membrane [GO:0031225]; apoplast [GO:0048046]; integral component of membrane [GO:0016021]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:21323773}. locus:2161248;,locus:2155816; AT5G58170,AT5G58050 glycerophosphoryl diester phosphodiesterase OSJNBb0022F23.4 protein (Os04g0472300 protein) (cDNA clone:J023048K03, full insert sequence),Glycerophosphoryl diester phosphodiesterase 2-like protein (Os02g0588500 protein),Glycerophosphoryl diester phosphodiesterase 2-like protein (Os02g0187400 protein),Os02g0588500 protein (Putative GPI-anchored protein),Os04g0472300 protein (Fragment) Q7XR26,Q6YY46,Q6ZIM6,Q6YY47,A0A0N7KJ78 Q7XR26_ORYSJ,Q6YY46_ORYSJ,Q6ZIM6_ORYSJ,Q6YY47_ORYSJ,A0A0N7KJ78_ORYSJ Os04g0472300 OsJ_15144 OSJNBb0022F23.4 OSNPB_040472300,OSJNBb0046O12.20 Os02g0588500 OSNPB_020588500,OJ1073_F05.25-1 Os02g0187400 OSNPB_020187400,Os02g0588500 OsJ_07316 OSJNBb0046O12.21 OSNPB_020588500,Os04g0472300 OSNPB_040472300 ENOG411DQE9 Q94A98,A0A1P8AMT8 Q94A98_ARATH,A0A1P8AMT8_ARATH At1g65900/F12P19_7 (Plant/protein),Plant/protein 45215,40246 At1g65900/F12P19_7 (Plant/protein),Plant/protein locus:2009724; AT1G65900 NA NA NA NA NA NA NA NA ENOG411DQE6 TRS120 Q9FY61 TR120_ARATH Trafficking protein particle complex II-specific subunit 120 homolog (AtTRS120) (TRAPP II-specific subunit 120 homolog) (Protein VASCULAR NETWORK DEFECTIVE 4) DISRUPTION PHENOTYPE: Cytokinesis-defective and seedling-lethal phenotype. {ECO:0000269|PubMed:20713617}. Seedling lethal-F. Assaad-2010 FUNCTION: Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells (PubMed:20713617, PubMed:21689172, PubMed:24443495). Required for the polarized and selective transport of PIN2 and probably PIN1 to the plasma membrane (PubMed:21689172, PubMed:24443495). Not required for ER-to-Golgi as well as biosynthetic and endocytic vacuolar transport (PubMed:21689172). {ECO:0000269|PubMed:20713617, ECO:0000269|PubMed:21689172, ECO:0000269|PubMed:24443495}. R-ATH-204005;R-ATH-8876198; 129595 Trafficking protein particle complex II-specific subunit 120 homolog (AtTRS120) (TRAPP II-specific subunit 120 homolog) (Protein VASCULAR NETWORK DEFECTIVE 4) early endosome [GO:0005769]; trans-Golgi network [GO:0005802]; cell plate assembly [GO:0000919]; cytokinesis by cell plate formation [GO:0000911]; transport [GO:0006810] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:24443495}. locus:2184901; AT5G11040 Pfam:Trs120 Trafficking protein particle complex II-specific subunit 120 homolog (TRAPP II-specific subunit 120 homolog) Q0JBY9 TR120_ORYSJ TRS120 Os04g0502200 LOC_Os04g42370 OSJNBa0029H02.30 FUNCTION: Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells. {ECO:0000250|UniProtKB:Q9FY61}. ENOG411DU0E DCAF1 Q9M086 DCAF1_ARATH DDB1- and CUL4-associated factor homolog 1 (Protein DDB1-CUL4 ASSOCIATED FACTOR 1) (Protein DCAF1) DISRUPTION PHENOTYPE: Embryonic development is arrested at the globular stage. {ECO:0000269|PubMed:18552200}. The dcaf1-1 mutation appears to arrest embyro development at the globular stage in presumed dcaf1-1 homozygous mutants. There are no obvious phenotypic defects in heterozygous plants grown under normal conditions.,The dcaf1-2 mutation appears to arrest embyro development at the globular stage in presumed dcaf1-2 homozygous mutants. There are no obvious phenotypic defects in heterozygous plants grown under normal conditions. Embryo defective; Globular-X. Deng-2008 FUNCTION: Component of the CUL4-RBX1-DDB1-DCAF1 E3 ubiquitin-protein ligase complex, DCAF1 may function as the substrate recognition module within this complex. Appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development. {ECO:0000269|PubMed:18552200}. PATHWAY: Protein modification; protein ubiquitination. 205451 DDB1- and CUL4-associated factor homolog 1 (Protein DDB1-CUL4 ASSOCIATED FACTOR 1) (Protein DCAF1) nucleus [GO:0005634]; embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; fruit development [GO:0010154]; leaf development [GO:0048366]; phyllome development [GO:0048827]; protein ubiquitination [GO:0016567]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Ubiquitous but predominantly expressed in the inflorescence and roots. locus:2126296; AT4G31160 DDB1- and CUL4-associated factor homolog Os04g0691200 protein A0A0P0WGM8 A0A0P0WGM8_ORYSJ Os04g0691200 OSNPB_040691200 ENOG411DU0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain Os05g0267800 protein (cDNA clone:006-210-C03, full insert sequence),Os05g0267100 protein Q5WMM0,Q60DZ6,A0A0P0WJY3 Q5WMM0_ORYSJ,Q60DZ6_ORYSJ,A0A0P0WJY3_ORYSJ Os05g0267800 OSJNBa0034K10.5 OSNPB_050267800,Os05g0267100 OSJNBa0010H19.12 OSNPB_050267100,Os05g0267100 OSNPB_050267100 ENOG411DU0G MAPKKK18 Q9ZVP5 M3K18_ARATH Mitogen-activated protein kinase kinase kinase 18 (EC 2.7.11.25) DISRUPTION PHENOTYPE: More vigorous root growth, decreased abaxial stomatal index and increased stomatal aperture. Reduced induction of RD29B and RAB18 expression in response to treatment with abscisic acid (ABA) (PubMed:26443375). In the double mutant map3k17 map3k18, impaired MPK7 activation mediated by ABA (PubMed:25720833). {ECO:0000269|PubMed:25720833, ECO:0000269|PubMed:26443375}. FUNCTION: Component of the abscisic acid (ABA) signaling pathway that acts as ABA signal transducer in the context of abiotic stresses (PubMed:26443375, PubMed:25720833, PubMed:25680457). Triggers MPK1, MPK2, MPK7 and MPK14 activation in a MKK3-dependent manner and MPK6 activation in a MKK3-independent manner. Mediates the ABA-dependent activation of the MKK3-MPK7 module (PubMed:25720833). Positive regulator of ABA responses leading to the induction of gene expression (e.g. RD29B and RAB18) and involved in various responses including stomatal development, stomatal movement, inhibition of germination and root growth (PubMed:26443375). Promotes leaf senescence (PubMed:25680457). {ECO:0000269|PubMed:25680457, ECO:0000269|PubMed:25720833, ECO:0000269|PubMed:26443375}. 2.7.11.25 37742 Mitogen-activated protein kinase kinase kinase 18 (EC 2.7.11.25) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; signal transducer, downstream of receptor, with serine/threonine kinase activity [GO:0004702]; abscisic acid-activated signaling pathway [GO:0009738]; activation of protein kinase activity [GO:0032147]; negative regulation of stomatal opening [GO:1902457]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of leaf senescence [GO:1900057]; protein autophosphorylation [GO:0046777]; regulation of mitotic cell cycle [GO:0007346]; regulation of stomatal complex development [GO:2000038]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] DEVELOPMENTAL STAGE: In developing flowers, observed in sepals, anther filaments, ovaries and meristem tissues. Also expressed in root meristem tissues and in areas of lateral root formation. In leaves, detected in guard cells and trichomes. {ECO:0000269|PubMed:26443375}. TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:26443375}. locus:2205523; AT1G05100 mitogen-activated protein kinase kinase kinase Os05g0545400 protein (Fragment) Q0DG97 Q0DG97_ORYSJ Os05g0545400 Os05g0545400 OSNPB_050545400 ENOG411DU0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting protein kinase CBL-interacting protein kinase 26 (EC 2.7.11.1) (OsCIPK26) Q6H7U5 CIPKQ_ORYSJ CIPK26 Os02g0161000 LOC_Os02g06570 B1103G11.47 OJ9003_G05.12 OsJ_005311 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DU0A MCK7.20 Q8H1E2,F4KEX3 MDHNP_ARATH,F4KEX3_ARATH Malate dehydrogenase [NADP], chloroplastic (EC 1.1.1.82) (NADP-MDH),Malate dehydrogenase (EC 1.1.1.37) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions and high-light conditions in short days. {ECO:0000269|PubMed:22140244}. FUNCTION: The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells (Probable). Plays an essential role in the regulation of catalase activity and the accumulation of a hydrogen peroxide-dependent signal by transmitting the redox state of the chloroplast to other cell compartments (PubMed:24591715). {ECO:0000269|PubMed:24591715, ECO:0000305}. ARA:AT5G58330-MONOMER; 1.1.1.40; Carbon fixation in photosynthetic organisms (00710),Microbial metabolism in diverse environments (01120),Pyruvate metabolism (00620),Metabolic pathways (01100) 1.1.1.82,1.1.1.37 48316,36391 Malate dehydrogenase [NADP], chloroplastic (EC 1.1.1.82) (NADP-MDH),Malate dehydrogenase (EC 1.1.1.37) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; L-malate dehydrogenase activity [GO:0030060]; malate dehydrogenase (NADP+) activity [GO:0046554]; NAD(P)+ transhydrogenase activity [GO:0008746]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; NADH metabolic process [GO:0006734]; oxaloacetate metabolic process [GO:0006107]; response to redox state [GO:0051775]; tricarboxylic acid cycle [GO:0006099],L-malate dehydrogenase activity [GO:0030060]; malate dehydrogenase (NADP+) activity [GO:0046554]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; tricarboxylic acid cycle [GO:0006099] locus:2161188; AT5G58330 Malate dehydrogenase Os08g0562100 protein (Putative malate dehydrogenase [NADP], chloroplast (NADP-MDH)) (cDNA clone:001-205-B06, full insert sequence) Q6YYW3 Q6YYW3_ORYSJ Os08g0562100 OsJ_28293 OSNPB_080562100 P0543D10.7 P0604E01.47 ENOG411DU0C AMY1 Q8VZ56 AMY1_ARATH Alpha-amylase 1 (AtAMY1) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:15637061}. Phenotype not described. Early flowering-L. Xuanming-2008 FUNCTION: Possesses alpha-amylase activity in vitro, but seems not required for breakdown of transitory starch in leaves. {ECO:0000269|PubMed:17324226}. ARA:AT4G25000-MONOMER; 3.2.1.1 47378 Alpha-amylase 1 (AtAMY1) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) apoplast [GO:0048046]; extracellular region [GO:0005576]; alpha-amylase activity [GO:0004556]; alpha-amylase activity (releasing maltohexaose) [GO:0103025]; calcium ion binding [GO:0005509]; carbohydrate metabolic process [GO:0005975]; response to abscisic acid [GO:0009737]; response to gibberellin [GO:0009739] DEVELOPMENTAL STAGE: Up-regulated during leaf senescence. TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and developing siliques. {ECO:0000269|PubMed:15927942}. locus:2117398; AT4G25000 alpha-amylase Alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (Alpha-amylase isozyme 1B),Alpha-amylase isozyme 3D (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase),Alpha-amylase isozyme 2A (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (Alpha-amylase isozyme C2),Alpha-amylase isozyme 3A (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase),Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (Alpha-amylase isozyme 1B),Alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase),Alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (Fragment) P17654,P27933,Q0D9J1,P27932,Q0JMV4,Q0J527,A0A0P0VPT7 AMY1_ORYSJ,AMY3D_ORYSJ,AMY2A_ORYSJ,AMY3A_ORYSJ,AMYC1_ORYSJ,Q0J527_ORYSJ,A0A0P0VPT7_ORYSJ AMY1.1 AMY1A Os02g0765600 LOC_Os02g52710 OJ1004_A11.13 P0539D10.32,AMY1.3 AMY3D Os08g0473900 LOC_Os08g36910 P0013B04.36-1 P0451G12.5-1,AMY2A AMY1.5 AMYC2 Os06g0713800 LOC_Os06g49970 OJ1136_F03.12 OsJ_22644,AMY1.2 AMY3A Os09g0457400 LOC_Os09g28400 B1045B05.8 OsJ_29629,AMY1B AMYC Os01g0357400 LOC_Os01g25510 P0025H06.22 P0514H03.1,Os08g0473900 Os08g0473900 OSNPB_080473900,Os02g0765400 OSNPB_020765400 FUNCTION: Important for breakdown of endosperm starch during germination. MISCELLANEOUS: Binds starch not only at the active site, but also via accessory binding sites on the protein surface that are important for efficient binding to starch granules and thereby increase enzyme activity. {ECO:0000250}. ENOG411DU0B EMB2761 F4IFC5 SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.3) (Protein EMBRYO DEFECTIVE 2761) (Threonyl-tRNA synthetase) (ThrRS) DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at the globular stage. {ECO:0000305|PubMed:16297076}. Embryo defective; Globular-D. Meinke-2007 6.1.1.3 74785 Threonine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.3) (Protein EMBRYO DEFECTIVE 2761) (Threonyl-tRNA synthetase) (ThrRS) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; threonine-tRNA ligase activity [GO:0004829]; embryo development ending in seed dormancy [GO:0009793]; threonyl-tRNA aminoacylation [GO:0006435] locus:504956029; AT2G04842 tRNA_SAD Os02g0538000 protein (Putative threonyl-tRNA synthetase) (cDNA clone:001-019-G05, full insert sequence) Q6ER90 Q6ER90_ORYSJ Os02g0538000 Os02g0538000 OsJ_07040 OSJNBa0014M17.10 OSNPB_020538000 P0508B05.31 ENOG411DU0M UBC5,UBC4 P42749,P42748,A0A1P8BD13,A0A1P8ART3 UBC5_ARATH,UBC4_ARATH,A0A1P8BD13_ARATH,A0A1P8ART3_ARATH Ubiquitin-conjugating enzyme E2 5 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 5) (Ubiquitin carrier protein 5) (Ubiquitin-conjugating enzyme E2-21 kDa 2) (Ubiquitin-protein ligase 5),Ubiquitin-conjugating enzyme E2 4 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 4) (Ubiquitin carrier protein 4) (Ubiquitin-conjugating enzyme E2-21 kDa 1) (Ubiquitin-protein ligase 4),Ubiquitin conjugating enzyme 4,Ubiquitin-conjugating enzyme 5 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. 2.3.2.23 21179,21298,17047,19388 Ubiquitin-conjugating enzyme E2 5 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 5) (Ubiquitin carrier protein 5) (Ubiquitin-conjugating enzyme E2-21 kDa 2) (Ubiquitin-protein ligase 5),Ubiquitin-conjugating enzyme E2 4 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 4) (Ubiquitin carrier protein 4) (Ubiquitin-conjugating enzyme E2-21 kDa 1) (Ubiquitin-protein ligase 4),Ubiquitin conjugating enzyme 4,Ubiquitin-conjugating enzyme 5 cytosol [GO:0005829]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511],ATP binding [GO:0005524] TISSUE SPECIFICITY: Expressed in developing ovules, but not in vascular tissues. {ECO:0000269|PubMed:8790283}.,TISSUE SPECIFICITY: Expressed in antipodal cells of developing seeds and in the vascular junction between the cotyledons or leaves and the hypocotyl. Not expressed in pollen. {ECO:0000269|PubMed:8790283}. locus:2026644;,locus:2177871; AT1G63800,AT5G41340 ubiquitin-conjugating enzyme Os10g0447100 protein (Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed) (cDNA clone:J013091F02, full insert sequence),Os10g0447100 protein (Fragment) Q109M1,A0A0P0XUQ1 Q109M1_ORYSJ,A0A0P0XUQ1_ORYSJ Os10g0447100 LOC_Os10g31000 Os10g0447100 OSNPB_100447100,Os10g0447100 OSNPB_100447100 ENOG411DU0N CDC48D,CDC48E,CDC48A Q9SCN8,Q9LZF6,P54609 CD48D_ARATH,CD48E_ARATH,CD48A_ARATH Cell division control protein 48 homolog D (AtCDC48d) (Transitional endoplasmic reticulum ATPase D),Cell division control protein 48 homolog E (AtCDC48e) (Transitional endoplasmic reticulum ATPase E),Cell division control protein 48 homolog A (AtCDC48a) Heterozygotes have reduced transmission due to defects in pollen tube germination and elongation.,Seedling lethal.Mutants have disorganized roots. Male and female gametophyte defective; Embryo defective-S. Bednarek-2008 FUNCTION: Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity). {ECO:0000250}. R-ATH-110320;R-ATH-3371511;R-ATH-382556;R-ATH-532668;R-ATH-5358346;R-ATH-5689877;R-ATH-5689896;R-ATH-6798695;R-ATH-8876725; 90340,89958,89393 Cell division control protein 48 homolog D (AtCDC48d) (Transitional endoplasmic reticulum ATPase D),Cell division control protein 48 homolog E (AtCDC48e) (Transitional endoplasmic reticulum ATPase E),Cell division control protein 48 homolog A (AtCDC48a) cytoskeleton [GO:0005856]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of protein catabolic process [GO:0045732]; protein transport [GO:0015031]; response to cadmium ion [GO:0046686],cell wall [GO:0005618]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein transport [GO:0015031],apoplast [GO:0048046]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; nuclear envelope [GO:0005635]; nucleolus [GO:0005730]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; spindle [GO:0005819]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; identical protein binding [GO:0042802]; cell cycle [GO:0007049]; cell division [GO:0051301]; negative regulation of defense response [GO:0031348]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; protein destabilization [GO:0031648]; protein transport [GO:0015031]; response to cadmium ion [GO:0046686] DEVELOPMENTAL STAGE: Highly expressed in the proliferating cells of the vegetative shoot, root, floral inflorescence and flowers, and in rapidly growing cells. locus:2101933;,locus:2831844;,locus:2085064; AT3G53230,AT5G03340,AT3G09840 cell division cycle protein 48 Cell division cycle protein 48, putative, expressed (Os03g0151800 protein) (cDNA clone:J013001D04, full insert sequence) (cDNA clone:J013082G14, full insert sequence) (cDNA clone:J013093N05, full insert sequence) (cDNA clone:J013112O07, full insert sequence),Os10g0442600 protein (cDNA clone:001-008-E02, full insert sequence),Os03g0151800 protein (Fragment) Q10RP0,B7E390,A0A0P0VT75 Q10RP0_ORYSJ,B7E390_ORYSJ,A0A0P0VT75_ORYSJ LOC_Os03g05730 Os03g0151800 OsJ_09438 OSNPB_030151800,Os10g0442600 OSNPB_100442600,Os03g0151800 OSNPB_030151800 ENOG411DU0I ATG3 Q0WWQ1,A0A1P8BCL3 ATG3_ARATH,A0A1P8BCL3_ARATH Autophagy-related protein 3 (Autophagy-related E2-like conjugation enzyme ATG3) (AtAPG3) (Protein autophagy 3),Autophagy-related protein 3 FUNCTION: E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of ATG8. This step is required for the membrane association of ATG8. The formation of the ATG8-phosphatidylethanolamine conjugate is essential for autophagy and for the cytoplasm to vacuole transport (Cvt). R-ATH-1632852; 35332,34880 Autophagy-related protein 3 (Autophagy-related E2-like conjugation enzyme ATG3) (AtAPG3) (Protein autophagy 3),Autophagy-related protein 3 cytoplasmic ubiquitin ligase complex [GO:0000153]; cytosol [GO:0005829]; Atg8 ligase activity [GO:0019776]; autophagosome assembly [GO:0000045]; autophagy of mitochondrion [GO:0000422]; nucleophagy [GO:0044804]; protein transport [GO:0015031],cytoplasm [GO:0005737]; autophagy [GO:0006914]; protein transport [GO:0015031] locus:2151566; AT5G61500 Autophagy-related protein 3 Autophagy-related protein 3,Autophagy-related protein 3 (Fragment) Q8LRF5,A0A0P0XXB4 Q8LRF5_ORYSJ,A0A0P0XXB4_ORYSJ Os01g0200000 Os01g0200000 B1015E06.3 OsJ_00756 OSNPB_010200000,Os10g0560450 OSNPB_100560450 ENOG411DU0H WIP2 Q9SVY1 ZWIP2_ARATH Zinc finger protein WIP2 (Protein NO TRANSMITTING TRACT) (WIP-domain protein 2) (AtWIP2) DISRUPTION PHENOTYPE: Reduced fertility, fruit length and seed set (PubMed:17600712). Reduced replum width and cell number (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:25039392}. Both fruit length and seed set are reduced in the mutant. Mature fruit are approximately 30% shorter than wild-type and the number of fertilized seeds is reduced by 60%.,In mature wild-type fruit stage 17 breakdown of cells within the transmitting tract has been completed and the mature two-cell layered septum has formed. In ntt mutants cellular breakdown has not occurred leaving several layers of cells between the two epidermal walls.,In the mutant pollen tubes have considerable difficulty growing within the transmitting tract causing them to terminate travel prematurely and frequently to leave the transmitting tract.,In wildtype 62% of the seeds were found in the bottom half of the silique (50-100 percentile) and 5% were found in the apical region (0-20 percentile). On average seeds formed toward the center of the silique (50?60 percentile). No preference was observed for fertilization of the most apical ovules. In the ntt mutant most seed formed in the upper half of the carpel (90%).,Only female reproductive tissue is affected in the mutant as shown by the fact that mutant pollen produces a normal seed set when applied to wild-type flowers. Considerably more siliques are produced in the mutants probably because of the reduced fertility of individual flowers.,Pollen-tube growth in ntt mutants is essentially unaffected prior to entry into the ovary chamber. The first difference between the wild-type and ntt mutant was observed 4 hr after pollination. Pollen tubes in wild-type had traveled a substantial distance into the transmitting tract but in ntt mutants tubes had only slightly penetrated the ovary chamber. In wild-type carpels the first pollen tubes reach the base of the ovary after 10 hr whereas in ntt carpels pollen tubes made little additional progress. Even after 48 hr pollen tubes in the ntt mutant had penetrated only approximately a third of the way into the ovary chamber.,Seeds develop only in the apical part of the fruit and are larger than those of wild type.,Significant reduction in the number of pollen tubes for the mutant compared with wild type. Reduced fertility-M. Yanofsky-2007 FUNCTION: Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. MISCELLANEOUS: The fruits of the gain-of-function mutant ntt-3D (T-DNA tagging) fail to dehisce. {ECO:0000269|PubMed:23515580}. 43337 Zinc finger protein WIP2 (Protein NO TRANSMITTING TRACT) (WIP-domain protein 2) (AtWIP2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell fate determination [GO:0001709]; fruit replum development [GO:1990058]; pollen tube growth [GO:0009860]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; transmitting tissue development [GO:0010500] TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. locus:2076641; AT3G57670 protein TRANSPARENT TESTA 1-like Os06g0612300 protein (Putative WIP1 protein) (cDNA clone:J023078D20, full insert sequence),Os02g0196100 protein (Putative zinc finger (C2H2 type) protein (WIP2)) Q69WZ1,Q6H7M9 Q69WZ1_ORYSJ,Q6H7M9_ORYSJ Os06g0612300 Os06g0612300 OSNPB_060612300 P0417G12.1 P0429G06.18,Os02g0196100 Os02g0196100 OJ1225_F07.21 OJ1524_D08.6 OSNPB_020196100 ENOG411DU0K Q0WVC6,A4VCL9,B3H693,A0A178V8K7 Q0WVC6_ARATH,A4VCL9_ARATH,B3H693_ARATH,A0A178V8K7_ARATH Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At3g56585),At3g10810 (Zinc finger (C3HC4-type RING finger) family protein),Hydroxyproline-rich glycoprotein family protein,Zinc finger (C3HC4-type RING finger) family protein 52075,54634,53204,54563 Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At3g56585),At3g10810 (Zinc finger (C3HC4-type RING finger) family protein),Hydroxyproline-rich glycoprotein family protein,Zinc finger (C3HC4-type RING finger) family protein integral component of membrane [GO:0016021] locus:2103177;,locus:2102589; AT3G56590,AT3G10810 zinc finger protein Hydroxyproline-rich glycoprotein-like (Os01g0938600 protein) (cDNA clone:J033059B18, full insert sequence),Os05g0373500 protein Q5JLQ2,A0A0P0WLU0 Q5JLQ2_ORYSJ,A0A0P0WLU0_ORYSJ Os01g0938600 Os01g0938600 B1150F11.6 OsJ_04708 OSNPB_010938600 P0504E02.30,Os05g0373500 OSNPB_050373500 ENOG411DU0J GCP2 Q9C5H9 GACP2_ARATH Gamma-tubulin complex component 2 (AtGCP2) (GCP-2) (Protein SPIRAL 3) (Spindle pole body protein Spc97 homolog) (AtSpc97) DISRUPTION PHENOTYPE: Embryonic lethality. Impaired development of male and female gametophytes. {ECO:0000269|PubMed:19509058}. FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. Required for the positioning of the gamma-tubulin-containing complex on pre-existing microtubules and for the proper organization of cortical arrays. {ECO:0000269|PubMed:19509058, ECO:0000269|PubMed:20935636}. 76946 Gamma-tubulin complex component 2 (AtGCP2) (GCP-2) (Protein SPIRAL 3) (Spindle pole body protein Spc97 homolog) (AtSpc97) cell cortex [GO:0005938]; cortical microtubule [GO:0055028]; cytoplasm [GO:0005737]; equatorial microtubule organizing center [GO:0000923]; gamma-tubulin complex [GO:0000930]; gamma-tubulin small complex [GO:0008275]; nuclear envelope [GO:0005635]; spindle pole [GO:0000922]; gamma-tubulin binding [GO:0043015]; structural constituent of cytoskeleton [GO:0005200]; cytoplasmic microtubule organization [GO:0031122]; gametophyte development [GO:0048229]; gamma-tubulin complex localization [GO:0033566]; interphase microtubule nucleation by interphase microtubule organizing center [GO:0051415]; meiotic cell cycle [GO:0051321]; mitotic spindle assembly [GO:0090307]; positive regulation of microtubule nucleation [GO:0090063] locus:2178930; AT5G17410 gamma-tubulin complex component Gamma-tubulin complex component Q0JBZ2 Q0JBZ2_ORYSJ Os04g0501700 Os04g0501700 OsJ_15355 OSNPB_040501700 FUNCTION: Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. {ECO:0000256|RuleBase:RU363050}. ENOG411DU0U XCT Q8H110 XCT_ARATH Protein XAP5 CIRCADIAN TIMEKEEPER DISRUPTION PHENOTYPE: Shortened circadian period. The clock is hypersensitive to red but shows normal responses to blue light. By contrast, inhibition of hypocotyl elongation is hyposensitive to red light but hypersensitive to blue light. {ECO:0000269|PubMed:18515502}. No photoperiod defects in constant darkness constant light constant red light constant blue light or a combination of constant red and blue light.,Short photoperiod both in constant darkness and constant light. Short photoperiod is more severe in darkness than in light. Delayed greening of shoot tissues. Long hypocotyl in red light but short hypocotyl in white or blue light. Hypersensitive to red light.,Short photoperiod both in constant darkness and constant light. Leaf movement rhythms are shortened in constant light. Long hypocotyl in red light but short hypocotyl in white or blue light. Hypersensitive to red light. Short circadian rhythms independent of light conditions-S. Harmer-2008 FUNCTION: Involved in light regulation of the circadian clock and photomorphogenesis. May play a global role in coordinating growth in response to the light environment. Acts as a light quality sensor directing both negative and positive transcriptional regulation. Inhibits growth in red light but promote growth in blue light. Inhibits clock gene expression in diurnal cycles. Plays no role in the control of flowering time. {ECO:0000269|PubMed:18515502}. 39240 Protein XAP5 CIRCADIAN TIMEKEEPER nucleus [GO:0005634]; ethylene-activated signaling pathway [GO:0009873]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; regulation of circadian rhythm [GO:0042752]; regulation of photomorphogenesis [GO:0010099]; response to blue light [GO:0009637]; response to red light [GO:0010114]; rhythmic process [GO:0048511] DEVELOPMENTAL STAGE: Present in nucleus throughout development. {ECO:0000269|PubMed:18515502}. TISSUE SPECIFICITY: Expressed in leaves stems, flowers, roots, trichomes and hypocotyls. {ECO:0000269|PubMed:18515502}. locus:2046987; AT2G21150 Protein XAP5 CIRCADIAN Protein XAP5 CIRCADIAN TIMEKEEPER Q69JZ7 XCT_ORYSJ XCT Os09g0535300 LOC_Os09g36480 J023088M16 OsJ_30139 P0569E11.5 FUNCTION: Involved in light regulation of the circadian clock and photomorphogenesis. {ECO:0000250}. ENOG411DU0T Anm2,Anm1,Anm3 A0A1I9LLD6,B9DH64,Q948Q8,Q948Q9,Q948Q7,A0A1I9LQ58,A0A1I9LRQ6,F4J890,A0A1I9LQ57,F4J893 A0A1I9LLD6_ARATH,B9DH64_ARATH,Q948Q8_ARATH,Q948Q9_ARATH,Q948Q7_ARATH,A0A1I9LQ58_ARATH,A0A1I9LRQ6_ARATH,F4J890_ARATH,A0A1I9LQ57_ARATH,F4J893_ARATH Solute carrier family 35 protein (DUF914),AT3G59320 protein (Solute carrier family 35 protein (DUF914)),Anthocyanin-related membrane protein 2 (At3g59320) (Solute carrier family 35 protein (DUF914)),Anthocyanin-related membrane protein 1 (Solute carrier family 35 protein (DUF914)) (Uncharacterized protein At3g59310),Anthocyanin-related membrane protein 3 (Solute carrier family 35 protein (DUF914)) 40249,26360,37496,37364,37320,28598,35356,40949,28685,27595 Solute carrier family 35 protein (DUF914),AT3G59320 protein (Solute carrier family 35 protein (DUF914)),Anthocyanin-related membrane protein 2 (At3g59320) (Solute carrier family 35 protein (DUF914)),Anthocyanin-related membrane protein 1 (Solute carrier family 35 protein (DUF914)) (Uncharacterized protein At3g59310),Anthocyanin-related membrane protein 3 (Solute carrier family 35 protein (DUF914)) integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2081212;,locus:2081262;,locus:2081197;,locus:2081222; AT3G59320,AT3G59310,AT3G59340,AT3G59330 solute carrier family 35 member Os05g0299500 protein (cDNA clone:J033047A18, full insert sequence),Os08g0540000 protein (Putative anthocyanin-related membrane protein 1 (Anm1)),Os09g0513200 protein Q0DJC9,Q69U97,A0A0P0XP05 Q0DJC9_ORYSJ,Q69U97_ORYSJ,A0A0P0XP05_ORYSJ Os05g0299500 Os05g0299500 OSNPB_050299500,P0666G10.130 Os08g0540000 OsJ_28118 OSNPB_080540000,Os09g0513200 OSNPB_090513200 ENOG411DU0W Q9M9E8 FB92_ARATH F-box protein At1g78280 R-ATH-3214842; 108505 F-box protein At1g78280 cytosol [GO:0005829] locus:2032090; AT1G78280 F-Box protein Os03g0389900 protein (Putative phosphatidylserine receptor long form) (Transcription factor jumonji, putative, expressed) (cDNA clone:J013000L11, full insert sequence),Os03g0389900 protein (Fragment) Q75LR4,A0A0P0VZ18 Q75LR4_ORYSJ,A0A0P0VZ18_ORYSJ Os03g0389900 LOC_Os03g27250 Os03g0389900 OsJ_11112 OSJNBa0017N12.11 OSNPB_030389900,Os03g0389900 OSNPB_030389900 ENOG411DU0V F15G16.170 Q9M360,F4K740,F4K733 Q9M360_ARATH,F4K740_ARATH,F4K733_ARATH Embryo defective 1703 (Uncharacterized protein F15G16.170),Embryo defective protein Embryo defective; Transition-D. Meinke-2002 127921,109868,104521 Embryo defective 1703 (Uncharacterized protein F15G16.170),Embryo defective protein locus:2076800;,locus:2146569;,locus:2185279; AT3G61780,AT5G28400,AT5G28320 NA NA NA NA NA NA NA NA ENOG411DU0Q OCT7 Q940M4 OCT7_ARATH Organic cation/carnitine transporter 7 (AtOCT7) FUNCTION: High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations (By similarity). {ECO:0000250}. 54573 Organic cation/carnitine transporter 7 (AtOCT7) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; N-methylnicotinate transporter activity [GO:0090417]; nicotinate transporter activity [GO:0090416]; substrate-specific transmembrane transporter activity [GO:0022891]; N-methylnicotinate transport [GO:2001143]; nicotinate transport [GO:2001142] TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:16607029}. locus:2089270; AT3G13050 Sugar (and other) transporter Os04g0609200 protein C7J0U8 C7J0U8_ORYSJ Os04g0609200 Os04g0609200 OSNPB_040609200 ENOG411DU0P rps4 P56799 RR4_ARATH 30S ribosomal protein S4, chloroplastic FUNCTION: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. {ECO:0000250}.; FUNCTION: With S5 and S12 plays an important role in translational accuracy. {ECO:0000250}. 23240 30S ribosomal protein S4, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; small ribosomal subunit [GO:0015935]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; positive regulation of translational fidelity [GO:0045903]; translation [GO:0006412] locus:504954662; ATCG00380 One of the primary rRNA binding proteins it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (By similarity) 30S ribosomal protein S4, chloroplastic P0C488 RR4_ORYSJ rps4 Nip054 FUNCTION: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. {ECO:0000250}.; FUNCTION: With S5 and S12 plays an important role in translational accuracy. {ECO:0000250}. ENOG411DU0S MTG13.4 F4KE59 F4KE59_ARATH RING/FYVE/PHD zinc finger superfamily protein 142243 RING/FYVE/PHD zinc finger superfamily protein metal ion binding [GO:0046872] locus:2148985; AT5G16680 PHD Os12g0433200 protein,Os10g0572500 protein (Fragment),Os10g0572400 protein (Fragment),Os12g0433133 protein (Fragment) Q0INL4,Q0IVG4,A0A0P0XY13,A0A0P0Y9M7 Q0INL4_ORYSJ,Q0IVG4_ORYSJ,A0A0P0XY13_ORYSJ,A0A0P0Y9M7_ORYSJ Os12g0433200 Os12g0433200 OSNPB_120433200,Os10g0572500 OSNPB_100572500,Os10g0572400 OSNPB_100572400,Os12g0433133 OSNPB_120433133 ENOG411DU0R Q94JX6 PP391_ARATH Pentatricopeptide repeat-containing protein At5g18390, mitochondrial 51770 Pentatricopeptide repeat-containing protein At5g18390, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA 5'-end processing [GO:0090617]; RNA modification [GO:0009451] locus:2146288; AT5G18390 Pentatricopeptide repeat-containing protein Os08g0525500 protein,Os08g0525500 protein (Fragment) A0A0P0XHW7,A0A0P0XI06 A0A0P0XHW7_ORYSJ,A0A0P0XI06_ORYSJ Os08g0525500 OSNPB_080525500 ENOG411DU0Y FUC95A Q8L7W8 FUCO2_ARATH Alpha-L-fucosidase 2 (EC 3.2.1.51) (Alpha-1,2-fucosidase 2) (Alpha-L-fucosidase 95A) (AtFuc95A) (Alpha-L-fucoside fucohydrolase 2) (Protein ALTERED XYLOGLUCAN 8) DISRUPTION PHENOTYPE: No visible phenotype. Higher abundance of fucosylated oligosaccharides and presence of unusual oligosaccharides. {ECO:0000269|PubMed:22080600}. FUNCTION: Hydrolyzes alpha-1,2-linked fucose. Also active on fucosylated xyloglucan oligosaccharides. No activity with 3-fucosyllactose, p-nitrophenyl-alpha-I-fucopyranoside, lacto-N-fucopentaose II, lacto-N-fucopentaose III or alpha 1,6-fucosylated chitopentaose. Involved in apoplastic xyloglucan metabolism. {ECO:0000269|PubMed:18495185, ECO:0000269|PubMed:22080600}. ARA:AT4G34260-MONOMER; 3.2.1.51 93725 Alpha-L-fucosidase 2 (EC 3.2.1.51) (Alpha-1,2-fucosidase 2) (Alpha-L-fucosidase 95A) (AtFuc95A) (Alpha-L-fucoside fucohydrolase 2) (Protein ALTERED XYLOGLUCAN 8) apoplast [GO:0048046]; 1,2-alpha-L-fucosidase activity [GO:0047513]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Ubiquitous. Highest expression in vascular tissues, leaf trichomes, root elongation zone and emerging lateral roots. {ECO:0000269|PubMed:22080600}. locus:2116154; AT4G34260 Inherit from NOG: alpha-l-fucosidase Large secreted protein, putative, expressed (Os10g0339600 protein),Large secreted protein, putative, expressed (Os10g0339290 protein) Q339Q0,Q109U3 Q339Q0_ORYSJ,Q109U3_ORYSJ Os10g0339600 LOC_Os10g19880 OsJ_31136 OSNPB_100339600,Os10g0339290 LOC_Os10g19334 OsJ_31132 OSNPB_100339290 ENOG411DU0X DMC1 Q39009,A0A1I9LT97 DMC1_ARATH,A0A1I9LT97_ARATH Meiotic recombination protein DMC1 homolog (AtDMC1),DNA repair (Rad51) family protein DISRUPTION PHENOTYPE: Strongly reduced fertility and seed numbers due to defects in male and female gametogenesis. {ECO:0000269|PubMed:10488231, ECO:0000269|PubMed:23300481}. Defective in meiotic double strand break formation. Fewer chiasmata formed per cell compared to the wild type cells. Reduced fertility due to defects in meiosis-M. Doutriaux-1999 FUNCTION: May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks (PubMed:10488231, PubMed:23300481). Mediates interhomolog recombination during meiosis (PubMed:17785529). {ECO:0000269|PubMed:10488231, ECO:0000269|PubMed:17785529, ECO:0000269|PubMed:23300481}. 37513,36428 Meiotic recombination protein DMC1 homolog (AtDMC1),DNA repair (Rad51) family protein condensed nuclear chromosome [GO:0000794]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; chiasma assembly [GO:0051026]; DNA metabolic process [GO:0006259]; DNA recombinase assembly [GO:0000730]; mitotic recombination [GO:0006312]; response to ionizing radiation [GO:0010212]; strand invasion [GO:0042148],nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; DNA repair [GO:0006281]; reciprocal meiotic recombination [GO:0007131] DEVELOPMENTAL STAGE: Cell cycle regulated, peaking at the S phase. It is also expressed at high levels in exponentially growing cells in suspension cultures. {ECO:0000269|PubMed:9520262}. TISSUE SPECIFICITY: Expressed in mitotic and/or meiotic tissues. Expressed in roots, leaves and anthers and carpels of young fower buds. {ECO:0000269|PubMed:9520262}. locus:2084558; AT3G22880 meiotic recombination protein DMC1 DMC1 (Os11g0146800 protein),DMC1 (Os12g0143800 protein) (cDNA clone:002-169-C11, full insert sequence) Q7GBF7,Q7GBF8 Q7GBF7_ORYSJ,Q7GBF8_ORYSJ OsDMC1B dmc1 Os11g0146800 OSNPB_110146800,OsDMC1A Os12g0143800 OSNPB_120143800 ENOG411DU0Z NAC062,NAC091,NTL9 Q9SCK6,Q9LKG8,F4JN35,F4JN33,A0A1I9LNJ5 NAC62_ARATH,NAC91_ARATH,NTL9_ARATH,F4JN33_ARATH,A0A1I9LNJ5_ARATH NAC domain-containing protein 62 (ANAC062) (Protein NTM1-like 6),NAC domain-containing protein 91 (ANAC091) (TCV-interacting protein),Protein NTM1-like 9 (Calmodulin-binding NAC protein),NAC transcription factor-like 9,NAC domain containing protein 62 DISRUPTION PHENOTYPE: Increased replication of turnip crinkle virus (TCV) and cucumber mosaic virus (CMV) (PubMed:18785827, PubMed:24418554). Normal HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Delayed flower development in antisense asTIP plants (PubMed:24418554). {ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:18443413, PubMed:22826500). Mutant plants display enhanced resistance to the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:22826500). {ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500}. FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.,FUNCTION: Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.,FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. MISCELLANEOUS: Plants over-expressing NTL6 show enhanced drought resistance. {ECO:0000269|PubMed:22967043}. 52494,50891,57250,59594,46131 NAC domain-containing protein 62 (ANAC062) (Protein NTM1-like 6),NAC domain-containing protein 91 (ANAC091) (TCV-interacting protein),Protein NTM1-like 9 (Calmodulin-binding NAC protein),NAC transcription factor-like 9,NAC domain containing protein 62 integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to cold [GO:0070417]; defense response, incompatible interaction [GO:0009814]; positive regulation of endoplasmic reticulum unfolded protein response [GO:1900103]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; defense response to virus [GO:0051607]; positive regulation of defense response to virus by host [GO:0002230]; response to molecule of bacterial origin [GO:0002237]; response to virus [GO:0009615]; transcription, DNA-templated [GO:0006351]; viral process [GO:0016032],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cellular response to osmotic stress [GO:0071470]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of defense response to bacterium [GO:1900426]; regulation of defense response [GO:0031347]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}. TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.,TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}. locus:2114678;,locus:2153899;,locus:2128013; AT3G49530,AT5G24590,AT4G35580 nac domain NA NA NA NA NA NA NA ENOG411DU05 Q9FNG8 PP366_ARATH Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial 116910 Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2164300; AT5G06400 Pentatricopeptide repeat-containing protein Os12g0456100 protein A0A0P0Y9U6 A0A0P0Y9U6_ORYSJ Os12g0456100 OSNPB_120456100 ENOG411DU04 P58684,F4JGB4 SPCS2_ARATH,F4JGB4_ARATH Probable signal peptidase complex subunit 2 (EC 3.4.-.-) (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit),Microsomal signal peptidase 25 kDa subunit (SPC25) FUNCTION: Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. {ECO:0000250}. 3.4.-.- 21642,21228 Probable signal peptidase complex subunit 2 (EC 3.4.-.-) (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit),Microsomal signal peptidase 25 kDa subunit (SPC25) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; organelle membrane [GO:0031090]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; protein targeting to ER [GO:0045047]; signal peptide processing [GO:0006465],integral component of membrane [GO:0016021]; signal peptidase complex [GO:0005787]; peptidase activity [GO:0008233]; protein targeting to ER [GO:0045047]; signal peptide processing [GO:0006465] locus:2061161;,locus:2137281; AT2G39960,AT4G04200 Signal peptidase complex subunit Microsomal signal peptidase 25 kDa subunit(SPC25)-like protein (Os02g0565200 protein) (cDNA clone:001-023-A06, full insert sequence) (cDNA clone:J033082A02, full insert sequence),OSJNBa0027P08.20 protein (Os04g0446300 protein) (cDNA clone:006-211-C02, full insert sequence) (cDNA clone:J013124O17, full insert sequence) (cDNA clone:J023109J17, full insert sequence) Q6Z7E3,Q7XUX4 Q6Z7E3_ORYSJ,Q7XUX4_ORYSJ Os02g0565200 Os02g0565200 OsJ_07177 OSNPB_020565200 P0020C11.25,Os04g0446300 Os04g0446300 OsJ_14950 OSJNBa0027P08.20 OSNPB_040446300 ENOG411DU07 CKL2,CKL12,CKL1 Q9CAI5,Q8VYK9,P42158,F4JID0 CKL2_ARATH,CKL12_ARATH,CKL1_ARATH,F4JID0_ARATH Casein kinase 1-like protein 2 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 2),Casein kinase 1-like protein 12 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 12),Casein kinase 1-like protein 1 (EC 2.7.11.1) (Casein kinase 1) (Casein kinase I isoform delta-like) (CKI-delta) (Protein CASEIN KINASE I-LIKE 1),Protein kinase superfamily protein FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins. {ECO:0000250|UniProtKB:P48730}. 2.7.11.1; 2.7.11.1 51879,49401,50947,32939 Casein kinase 1-like protein 2 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 2),Casein kinase 1-like protein 12 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 12),Casein kinase 1-like protein 1 (EC 2.7.11.1) (Casein kinase 1) (Casein kinase I isoform delta-like) (CKI-delta) (Protein CASEIN KINASE I-LIKE 1),Protein kinase superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:15010618}. locus:2030170;,locus:504954933;,locus:2120765;,locus:2138218; AT1G72710,AT5G57015,AT4G26100,AT4G08800 Casein Kinase Os01g0570500 protein Q656Y1,A0A0P0V4G2 Q656Y1_ORYSJ,A0A0P0V4G2_ORYSJ B1114B07.27-3 Os01g0570500 OSNPB_010570500,Os01g0570500 OSNPB_010570500 ENOG411DU06 BASS4 F4IZC4,A0A1I9LPI5,A0A1I9LPI7,A0A1I9LPI6,A0A1I9LPI4 BASS4_ARATH,A0A1I9LPI5_ARATH,A0A1I9LPI7_ARATH,A0A1I9LPI6_ARATH,A0A1I9LPI4_ARATH Probable sodium/metabolite cotransporter BASS4, chloroplastic (Bile acid transporter 4) (Bile acid-sodium symporter family protein 4),Sodium Bile acid symporter family FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. 46530,36844,43411,37946,33794 Probable sodium/metabolite cotransporter BASS4, chloroplastic (Bile acid transporter 4) (Bile acid-sodium symporter family protein 4),Sodium Bile acid symporter family chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; transport [GO:0006810],integral component of membrane [GO:0016021] locus:2078471; AT3G56160 Bile acid Probable sodium/metabolite cotransporter BASS4, chloroplastic (Bile acid-sodium symporter family protein 4) Q6ESG1 BASS4_ORYSJ BASS4 Os02g0531200 LOC_Os02g32930 OsJ_06999 P0605D08.11 FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. ENOG411DU01 LKHA4 Q9FY49 LKHA4_ARATH Leukotriene A-4 hydrolase homolog (LTA-4 hydrolase) (EC 3.3.2.6) (Leukotriene A(4) hydrolase) FUNCTION: Aminopeptidase that preferentially cleaves di- and tripeptides. Also has low epoxide hydrolase activity (in vitro). Can hydrolyze the epoxide leukotriene LTA(4) but it forms preferentially 5,6-dihydroxy-7,9,11,14-eicosatetraenoic acid rather than the cytokine leukotriene B(4) as the product compared to the homologous mammalian enzyme (in vitro). {ECO:0000250|UniProtKB:Q10740}. PATHWAY: Lipid metabolism; leukotriene B4 biosynthesis. ARA:AT5G13520-MONOMER; R-ATH-2142691;R-ATH-6798695; 3.3.2.6 69266 Leukotriene A-4 hydrolase homolog (LTA-4 hydrolase) (EC 3.3.2.6) (Leukotriene A(4) hydrolase) cytoplasm [GO:0005737]; cytosol [GO:0005829]; leukotriene-A4 hydrolase activity [GO:0004463]; metalloaminopeptidase activity [GO:0070006]; peptide binding [GO:0042277]; zinc ion binding [GO:0008270]; leukotriene biosynthetic process [GO:0019370]; peptide catabolic process [GO:0043171]; proteolysis [GO:0006508] locus:2185056; AT5G13520 Leukotriene A-4 Leucine aminopeptidase (EC 3.4.11.-) (Epoxide hydrolase) (EC 3.3.2.10) (Leukotriene A-4 hydrolase homolog) (LTA-4 hydrolase) Q84TA3 LKHA4_ORYSJ LKHA4 Os03g0819100 LOC_Os03g60460 OJ1754_E06.9 OsJ_13129 FUNCTION: Aminopeptidase that preferentially cleaves di- and tripeptides. Also has low epoxide hydrolase activity (in vitro). Can hydrolyze the epoxide leukotriene LTA(4) but it forms preferentially 5,6-dihydroxy-7,9,11,14-eicosatetraenoic acid rather than the cytokine leukotriene B(4) as the product compared to the homologous mammalian enzyme (in vitro). {ECO:0000250|UniProtKB:Q10740}. ENOG411DU00 rps5 P93014 RR5_ARATH 30S ribosomal protein S5, chloroplastic Null: Embryo defective; Preglobular; Knockdown: Pigment defect-D. Meinke-2011 FUNCTION: Binds directly to 16S ribosomal RNA. {ECO:0000250}. 32645 30S ribosomal protein S5, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; mitochondrial small ribosomal subunit [GO:0005763]; nucleus [GO:0005634]; thylakoid [GO:0009579]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; adaxial/abaxial pattern specification [GO:0009955]; chloroplast rRNA processing [GO:1901259]; plastid translation [GO:0032544]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409] locus:2057645; AT2G33800 Ribosomal protein S5 Os03g0452300 protein (Putative ribosomal protein) (Ribosomal protein S5 containing protein, expressed) (cDNA clone:001-035-H10, full insert sequence) (cDNA clone:001-037-G07, full insert sequence) (cDNA clone:J013042D13, full insert sequence) Q850W6 Q850W6_ORYSJ Os03g0452300 LOC_Os03g34040 Os03g0452300 OsJ_11420 OSJNBa0037J17.7 OSNPB_030452300 ENOG411DU03 F9E10.24 Q9C9P3,F4HXD1 Q9C9P3_ARATH,F4HXD1_ARATH ADP-glucose pyrophosphorylase family protein (At1g74910/F9E10_24) (Putative GDP-mannose pyrophosphorylase; 64911-67597),ADP-glucose pyrophosphorylase family protein ARA:AT1G74910-MONOMER; Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 45564,42897 ADP-glucose pyrophosphorylase family protein (At1g74910/F9E10_24) (Putative GDP-mannose pyrophosphorylase; 64911-67597),ADP-glucose pyrophosphorylase family protein cytosol [GO:0005829]; peroxisome [GO:0005777]; nucleotidyltransferase activity [GO:0016779]; sequence-specific DNA binding [GO:0043565]; biosynthetic process [GO:0009058]; regulation of L-ascorbic acid biosynthetic process [GO:2000082]; response to cadmium ion [GO:0046686],nucleotidyltransferase activity [GO:0016779]; biosynthetic process [GO:0009058] locus:2027201; AT1G74910 mannose-1-phosphate guanyltransferase ADP-glucose pyrophosphorylase (ADP-glucose pyrophosphorylase family protein, putative, expressed) (Os03g0208900 protein) (cDNA clone:J023072C15, full insert sequence),Os12g0109000 protein Q10Q61,A0A0P0Y646 Q10Q61_ORYSJ,A0A0P0Y646_ORYSJ Os03g0208900 LOC_Os03g11050 Os03g0208900 OsJ_09861 OSNPB_030208900,Os12g0109000 OSNPB_120109000 ENOG411DU02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine-rich receptor-like protein kinase Os11g0470500 protein,Os10g0483400 protein A0A0P0Y1W9,A0A0P0XVH4 A0A0P0Y1W9_ORYSJ,A0A0P0XVH4_ORYSJ Os11g0470500 OSNPB_110470500,Os10g0483400 OSNPB_100483400 ENOG411DU09 F4K658 F4K658_ARATH FAD/NAD(P)-binding oxidoreductase family protein 60490 FAD/NAD(P)-binding oxidoreductase family protein intracellular [GO:0005622]; mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491] locus:505006683; AT5G49555 Pyridine nucleotide-disulfide oxidoreductase domain-containing protein Amine oxidase, putative, expressed (Os12g0631800 protein) (cDNA clone:J033128O13, full insert sequence),Os12g0631800 protein Q2QLR3,A0A0P0YCC9 Q2QLR3_ORYSJ,A0A0P0YCC9_ORYSJ Os12g0631800 LOC_Os12g43590 OSNPB_120631800,Os12g0631800 OSNPB_120631800 ENOG411DU08 SKI2 F4JAA5,A0A1I9LMJ9,A0A1I9LMK0 SKI2_ARATH,A0A1I9LMJ9_ARATH,A0A1I9LMK0_ARATH DExH-box ATP-dependent RNA helicase DExH11 (EC 3.6.4.13) (AtHELPS) (Protein SKI2 homolog) (AtSKI2),RNA helicase, ATP-dependent, SK12/DOB1 protein DISRUPTION PHENOTYPE: Dwarf phenotype. {ECO:0000269|PubMed:22511887}. FUNCTION: Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C) (PubMed:22511887). Involved in the regulation of potassium deprivation stress response (PubMed:21535471). {ECO:0000269|PubMed:21535471, ECO:0000269|PubMed:22511887}. R-ATH-429958; 3.6.4.13 151184,136287,135385 DExH-box ATP-dependent RNA helicase DExH11 (EC 3.6.4.13) (AtHELPS) (Protein SKI2 homolog) (AtSKI2),RNA helicase, ATP-dependent, SK12/DOB1 protein cytoplasm [GO:0005737]; Ski complex [GO:0055087]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [GO:0070478]; posttranscriptional gene silencing [GO:0016441]; potassium ion transport [GO:0006813]; regulation of transcription, DNA-templated [GO:0006355]; response to potassium ion [GO:0035864]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; RNA catabolic process [GO:0006401] TISSUE SPECIFICITY: Expressed in vascular tissues of leaves and roots of young plants. {ECO:0000269|PubMed:21535471}. locus:2075566; AT3G46960 DSHCT (NUC185) domain Os02g0160000 protein (Fragment) Q0E3Q8 Q0E3Q8_ORYSJ Os02g0160000 Os02g0160000 OSNPB_020160000 ENOG411EMC9 PSKR2 Q9FN37 PSKR2_ARATH Phytosulfokine receptor 2 (AtPSKR2) (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase 2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17989228}. FUNCTION: Phytosulfokine receptor with a serine/threonine-protein kinase activity. {ECO:0000269|PubMed:17989228}. 2.7.11.1 114340 Phytosulfokine receptor 2 (AtPSKR2) (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase 2) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; peptide receptor activity [GO:0001653]; protein serine/threonine kinase activity [GO:0004674] locus:2154709; AT5G53890 STYKc Os07g0107800 protein,Os07g0107800 protein (Fragment) Q0D948,A0A0P0X1N0 Q0D948_ORYSJ,A0A0P0X1N0_ORYSJ Os07g0107800 Os07g0107800 OSNPB_070107800,Os07g0107800 OSNPB_070107800 ENOG411EMC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STI1 NA NA NA NA NA NA NA ENOG411EMC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EMCN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411EMCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DOMON domain Os05g0237200 protein (Fragment) A0A0P0WJK7 A0A0P0WJK7_ORYSJ Os05g0237200 OSNPB_050237200 ENOG411EMCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411EMCC AIR12 Q94BT2,A0A1I9LRM3 AIR12_ARATH,A0A1I9LRM3_ARATH Auxin-induced in root cultures protein 12,Auxin-induced in root cultures-like protein FUNCTION: One-heme-containing cytochrome. {ECO:0000305|PubMed:19386804}. 25592,17437 Auxin-induced in root cultures protein 12,Auxin-induced in root cultures-like protein anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; auxin-activated signaling pathway [GO:0009734]; oxidation-reduction process [GO:0055114] DEVELOPMENTAL STAGE: Expressed during auxin-induced lateral root formation. {ECO:0000269|PubMed:10080694}. AT3G07390 Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411EMCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMCY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os09g0570500 protein (Fragment) Q0IZG4 Q0IZG4_ORYSJ Os09g0570500 OSNPB_090570500 ENOG411EMCX F4JWA1,A0A1P8BD10,F4JWA3 F4JWA1_ARATH,A0A1P8BD10_ARATH,F4JWA3_ARATH RING/U-box superfamily protein 99169,86173,95064 RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:2184407; AT5G04460 RING NA NA NA NA NA NA NA ENOG411EMCW Q9FKH6,Q9LSE7,Q9SV71 B561P_ARATH,B561C_ARATH,B561O_ARATH Cytochrome b561 and DOMON domain-containing protein At5g35735 (Protein b561A.tha16),Cytochrome b561 and DOMON domain-containing protein At3g25290 (Protein b561A.tha3),Cytochrome b561 and DOMON domain-containing protein At4g12980 (Protein b561A.tha15) FUNCTION: May act as a catecholamine-responsive trans-membrane electron transporter. {ECO:0000269|PubMed:15022831}. 43868,42559,42229 Cytochrome b561 and DOMON domain-containing protein At5g35735 (Protein b561A.tha16),Cytochrome b561 and DOMON domain-containing protein At3g25290 (Protein b561A.tha3),Cytochrome b561 and DOMON domain-containing protein At4g12980 (Protein b561A.tha15) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:505006660;,locus:2090240;,locus:2123271; AT5G35735,AT3G25290,AT4G12980 membrane NA NA NA NA NA NA NA ENOG411EMCV Q9M363,A0A1I9LNQ1 B561I_ARATH,A0A1I9LNQ1_ARATH Cytochrome b561 and DOMON domain-containing protein At3g61750 (Protein b561A.tha9),Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein FUNCTION: May act as a catecholamine-responsive trans-membrane electron transporter. {ECO:0000269|PubMed:15022831}. 44466,35691 Cytochrome b561 and DOMON domain-containing protein At3g61750 (Protein b561A.tha9),Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114],integral component of membrane [GO:0016021]; oxidation-reduction process [GO:0055114] locus:2076770; AT3G61750 DOMON domain NA NA NA NA NA NA NA ENOG411EMCU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) Cytochrome b561 and DOMON domain-containing protein Q7F1F1 Q7F1F1_ORYSJ OJ1191_A10.101 Os08g0524200 OJ1186_G01.38 OSNPB_080524200 ENOG411EMH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit NA NA NA NA NA NA NA ENOG411EMH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein NA NA NA NA NA NA NA ENOG411E5X2 GATC F4JV80 GATC_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial (Glu-AdT subunit C) (EC 6.3.5.-) FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_03149, ECO:0000269|PubMed:18441100}. 6.3.5.- 17519 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial (Glu-AdT subunit C) (EC 6.3.5.-) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; regulation of translational fidelity [GO:0006450]; translation [GO:0006412] locus:505006545; AT4G32915 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial (Glu-AdT subunit C) (EC 6.3.5.-) Q7XZZ1 GATC_ORYSJ GATC Os03g0651000 LOC_Os03g44820 OsJ_11926 OSJNBa0093M23.4 FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_03149}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03149}. ENOG411E5X3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0864200 protein (cDNA, clone: J065155M15, full insert sequence) Q0JHH1 Q0JHH1_ORYSJ Os01g0864200 Os01g0864200 OsJ_04172 OSNPB_010864200 ENOG411E5X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0132200 protein (cDNA clone:002-139-F12, full insert sequence) Q5ZCM1 Q5ZCM1_ORYSJ Os01g0132200 Os01g0132200 OsJ_00251 OSJNBa0083M16.4 OSNPB_010132200 P0504H10.35 ENOG411E5X1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Heavy metal-associated domain containing protein (Os03g0372600 protein) Q84TS2 Q84TS2_ORYSJ OSJNBb0097F01.9 Os03g0372600 LOC_Os03g25610 OSNPB_030372600 ENOG411E5X6 O64818 Y2309_ARATH Uncharacterized protein At2g23090 8376 Uncharacterized protein At2g23090 locus:2045359; AT2G23090 4F5 protein family Expressed protein, having alternate splicing products (Os03g0439800 protein),Os07g0114300 protein (cDNA clone:001-044-A07, full insert sequence) Q75KB8,Q8H387 Q75KB8_ORYSJ,Q8H387_ORYSJ OSJNBa0054H04.31 Os03g0439800 OSNPB_030439800,OJ1513_F02.133 Os07g0114300 OsJ_22866 OSNPB_070114300 ENOG411E5X7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Blue copper Blue copper binding protein-like (Os06g0721800 protein) (cDNA, clone: J100088D04, full insert sequence),Blue copper binding protein-like (Os06g0718400 protein) Q5Z4F3,Q5Z8N5 Q5Z4F3_ORYSJ,Q5Z8N5_ORYSJ Os06g0721800 Os06g0721800 OSJNBa0076I16.37 OSNPB_060721800 P0535F09.2,Os06g0718400 OsJ_22688 OSJNBa0076I16.1 OSNPB_060718400 P0541C02.24 ENOG411E5X4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411E5X5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os05g0223500 protein,Os05g0223300 protein (cDNA clone:J023021C02, full insert sequence),Os05g0223200 protein (cDNA clone:002-101-C12, full insert sequence) Q5TKK0,Q5TKK1,Q5TKK2 Q5TKK0_ORYSJ,Q5TKK1_ORYSJ,Q5TKK2_ORYSJ Os05g0223500 OJ1532_D06.7 OsJ_17599 OSNPB_050223500,Os05g0223300 OJ1532_D06.6 OsJ_17598 OSNPB_050223300,Os05g0223200 Os05g0223200 OJ1532_D06.5 OSNPB_050223200 ENOG411E5X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protease inhibitor seed storage Os01g0800600 protein A0A0P0V9F6 A0A0P0V9F6_ORYSJ Os01g0800600 OSNPB_010800600 ENOG411E5X9 Q9CAG4,B3H4Y3 Q9CAG4_ARATH,B3H4Y3_ARATH Transmembrane protein (Uncharacterized protein F12B7.9),Transmembrane protein 26425,29086 Transmembrane protein (Uncharacterized protein F12B7.9),Transmembrane protein integral component of membrane [GO:0016021] locus:2008823; AT1G67540 NA Os04g0504700 protein (Fragment),Os05g0479250 protein,Os07g0202600 protein A0A0P0WCD5,A0A0P0WNT1,A0A0P0X4A5 A0A0P0WCD5_ORYSJ,A0A0P0WNT1_ORYSJ,A0A0P0X4A5_ORYSJ Os04g0504700 OSNPB_040504700,Os05g0479250 OSNPB_050479250,Os07g0202600 OSNPB_070202600 ENOG411E5XR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0192300 protein Q7F8S8 Q7F8S8_ORYSJ P0437H03.106 Os02g0192300 OSNPB_020192300 P0453H10.27 ENOG411E5XS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5XP MDF20.1 A0A1P8BER1,F4K4X2 A0A1P8BER1_ARATH,F4K4X2_ARATH Transmembrane protein 15457,15741 Transmembrane protein integral component of membrane [GO:0016021] locus:2162087; AT5G55570 NA Os01g0762300 protein (Fragment) A0A0P0V8H6 A0A0P0V8H6_ORYSJ Os01g0762300 OSNPB_010762300 ENOG411E5XQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion transport protein NA NA NA NA NA NA NA ENOG411E5XW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0667300 protein (cDNA clone:001-010-H12, full insert sequence) (cDNA clone:J013166I11, full insert sequence) Q6ET96 Q6ET96_ORYSJ Os02g0667300 OJ1486_E07.28 OJ1725_H08.5 OSNPB_020667300 ENOG411E5XU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZPR1 zinc-finger domain NA NA NA NA NA NA NA ENOG411E5XZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os08g0173700 protein (Putative AP2/EREBP transcription factor LEAFY PETIOLE) (cDNA, clone: J065205D04, full insert sequence) Q6Z4V0 Q6Z4V0_ORYSJ Os08g0173700 OSJNBa0054L03.18 OSNPB_080173700 ENOG411E5XX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5XY A0A1P8BD33 A0A1P8BD33_ARATH Transcription factor bHLH140-like protein 19176 Transcription factor bHLH140-like protein protein dimerization activity [GO:0046983] Helix-loop-helix DNA-binding domain Transcription factor LAX PANICLE 1 (Basic helix-loop-helix protein 123) (OsbHLH123) (Protein LAX PANICLE) Q7XAQ6 LAX1_ORYSJ LAX1 BHLH123 LAX Os01g0831000 LOC_Os01g61480 P0446G04.27 DISRUPTION PHENOTYPE: Defects in initiation and/or maintenance of rachis-branches, lateral spikelets and terminal spikelets. {ECO:0000269|PubMed:11237465}. FUNCTION: Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. ENOG411E5XB O49388,Q3E9S9 O49388_ARATH,Q3E9S9_ARATH At4g32030 (Uncharacterized protein AT4g32030) (Uncharacterized protein F10N7.160),Uncharacterized protein 27641,22341 At4g32030 (Uncharacterized protein AT4g32030) (Uncharacterized protein F10N7.160),Uncharacterized protein locus:2116617; AT4G32030 NA NA NA NA NA NA NA NA ENOG411E5XC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: rapid ALkalinization Factor NA NA NA NA NA NA NA ENOG411E5XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0121300 protein) (cDNA, clone: J053073I05, full insert sequence),Expressed protein (Os12g0121000 protein) (cDNA clone:J013134H19, full insert sequence) Q2RB88,Q2QYG0 Q2RB88_ORYSJ,Q2QYG0_ORYSJ Os11g0121300 LOC_Os11g02820 Os11g0121300 OsJ_32753 OSNPB_110121300,Os12g0121000 LOC_Os12g02800 Os12g0121000 OsJ_35036 OSNPB_120121000 ENOG411E5XF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor NA NA NA NA NA NA NA ENOG411E5XD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: phosphate abc transporter NA NA NA NA NA NA NA ENOG411E5XE ELF4 O04211 ELF4_ARATH Protein EARLY FLOWERING 4 (Protein ARRHYTHMIC 44) DISRUPTION PHENOTYPE: Impaired in their ability to sense day length leading to early flowering in non-inductive photoperiods (probably through the misexpression of CO), and elongated hypocotyls and petioles in short days (SD). Attenuated light-regulated expression of CCA1 and LHY, central oscillator components. Transient output rhythms with highly variable period lengths before becoming arrhythmic. Reduced responsiveness to continuous red, but not continuous far-red light, suggesting a role in phyB signaling but not phyA signaling. {ECO:0000269|PubMed:12214234, ECO:0000269|PubMed:14605220, ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:15908595, ECO:0000269|PubMed:16212608, ECO:0000269|PubMed:17384164, ECO:0000269|PubMed:20357892, ECO:0000269|PubMed:21255161}. No visible phenotype under constant far-red light conditions.,Reduced sensitivity to constant red light during de-etiolation. Have longer hypocotyls than Col siblings when grown in continuous red light for 4 days. Reduced expansion of cotyledon area slightly elongated petioles.,Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is increased compared to wild type and the cotyledon area is smaller. Long hypocotyl and petioles; Abnormal circadian rhythms; Early flowering in non-inductive photoperiods-R. Amasino-2002 FUNCTION: Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. Part of a corepressor complex consisting of ELF4, ELF3, and LUX involved in the transcriptional regulation of APRR9. Increases ELF3 nuclear distribution and localization in nuclear bodies. Required for responsiveness to continuous red, by regulating phytochrome B (phyB) signaling (including during seedling de-etiolation) and gene expression. Mediates both entrainment to an environmental cycle and circadian rhythm sustainability under constant conditions. Controls flowering time. Necessary for light-induced expression of both CCA1 and LHY. {ECO:0000269|PubMed:12214234, ECO:0000269|PubMed:14605220, ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:15908595, ECO:0000269|PubMed:16212608, ECO:0000269|PubMed:17384164, ECO:0000269|PubMed:20357892, ECO:0000269|PubMed:21255161, ECO:0000269|PubMed:22327739}. 12376 Protein EARLY FLOWERING 4 (Protein ARRHYTHMIC 44) nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; entrainment of circadian clock [GO:0009649]; flower development [GO:0009908]; photoperiodism [GO:0009648]; photoperiodism, flowering [GO:0048573]; positive regulation of circadian rhythm [GO:0042753]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; regulation of flower development [GO:0009909]; response to karrikin [GO:0080167]; response to red light [GO:0010114]; rhythmic process [GO:0048511] locus:2061226; AT2G40080 early flowering NA NA NA NA NA NA NA ENOG411E5XJ ASL2 Q9LDL9 Q9LDL9_ARATH Activator of spomin::LUC2 (Activator of sporamin LUC 2) (MJM20.3 protein) 28861 Activator of spomin::LUC2 (Activator of sporamin LUC 2) (MJM20.3 protein) nucleus [GO:0005634]; positive regulation of transcription, DNA-templated [GO:0045893]; sugar mediated signaling pathway [GO:0010182] locus:2090374; AT3G12890 CCT motif NA NA NA NA NA NA NA ENOG411E5XK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor family protein Os03g0345000 protein (Rapid ALkalinization Factor family protein) Q10LK5 Q10LK5_ORYSJ Os03g0345000 LOC_Os03g22440 OSNPB_030345000 ENOG411E5XH ATOZI1 Q38842,Q2HIQ2 Q38842_ARATH,Q2HIQ2_ARATH AT0ZI1 protein (ATOZI1 protein) (Monopolar spindle protein (DUF1138)) (Stress-induced protein OZI1),At1g01170 (Ozone-responsive stress-like protein (DUF1138)) 8606,9062 AT0ZI1 protein (ATOZI1 protein) (Monopolar spindle protein (DUF1138)) (Stress-induced protein OZI1),At1g01170 (Ozone-responsive stress-like protein (DUF1138)) membrane [GO:0016020]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; plastid [GO:0009536]; response to bacterium [GO:0009617]; response to ozone [GO:0010193]; response to reactive oxygen species [GO:0000302],integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739] locus:2134568;,locus:2035247; AT4G00860,AT1G01170 Protein of unknown function (DUF1138) Os06g0114500 protein (Ozone-responsive stress-related protein-like) (cDNA clone:001-026-D01, full insert sequence) (cDNA clone:J013083K07, full insert sequence),Os06g0115100 protein (Ozone-responsive stress-related protein-like) (cDNA clone:001-023-D05, full insert sequence),Os11g0161033 protein (Os11g0161200 protein) (Ozone-responsive stress-related protein, putative, expressed),Os02g0609200 protein (Fragment),Os04g0497300 protein (Fragment) Q9LWT2,Q9LWS6,Q53PM1,A0A0N7KFN3,A0A0P0WBZ9 Q9LWT2_ORYSJ,Q9LWS6_ORYSJ,Q53PM1_ORYSJ,A0A0N7KFN3_ORYSJ,A0A0P0WBZ9_ORYSJ Os06g0114500 OsJ_19889 OSJNBa0019F11.5 OSNPB_060114500 P0541H01.27,Os06g0115100 Os06g0115100 OsJ_19893 OSJNBa0019F11.12 OSNPB_060115100 P0541H01.34,Os11g0161200 LOC_Os11g06240 Os11g0161033 OsJ_33064 OSNPB_110161200,Os02g0609200 OSNPB_020609200,Os04g0497300 OSNPB_040497300 ENOG411E5XI KIWI,T5E8_40 O65154,Q9FY90,B3H688,A0A1P8BFY1,A0A1P8BG06,F4KCI9,F4KCI8 KIWI_ARATH,Q9FY90_ARATH,B3H688_ARATH,A0A1P8BFY1_ARATH,A0A1P8BG06_ARATH,F4KCI9_ARATH,F4KCI8_ARATH RNA polymerase II transcriptional coactivator KIWI,At5g09240 (Putative transcriptional co-activator) (SsDNA-binding transcriptional regulator) (Transcriptional co-activator-like protein),SsDNA-binding transcriptional regulator FUNCTION: General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA (By similarity). {ECO:0000250}. 12083,12699,9634,13369,12618,13679,16016 RNA polymerase II transcriptional coactivator KIWI,At5g09240 (Putative transcriptional co-activator) (SsDNA-binding transcriptional regulator) (Transcriptional co-activator-like protein),SsDNA-binding transcriptional regulator nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; positive regulation of transcription initiation from RNA polymerase II promoter [GO:0060261]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; positive regulation of transcription initiation from RNA polymerase II promoter [GO:0060261] locus:2184747;,locus:2184732; AT5G09250,AT5G09240 RNA polymerase II transcriptional coactivator NA NA NA NA NA NA NA ENOG411E5XN UBL5,T14D3.120 Q9FGZ9,Q9M1U1 UBL5_ARATH,Q9M1U1_ARATH Ubiquitin-like protein 5,Ubiquitin-like superfamily protein (Uncharacterized protein T14D3.120) 8571,8621 Ubiquitin-like protein 5,Ubiquitin-like superfamily protein (Uncharacterized protein T14D3.120) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein tag [GO:0031386]; cellular protein modification process [GO:0006464]; mRNA splicing, via spliceosome [GO:0000398] locus:2157597;,locus:2096870; AT5G42300,AT3G45180 Ubiquitin-like protein Os12g0143100 protein (Fragment),Os11g0145400 protein (Fragment) A0A0P0Y727,A0A0P0XYN0 A0A0P0Y727_ORYSJ,A0A0P0XYN0_ORYSJ Os12g0143100 OSNPB_120143100,Os11g0145400 OSNPB_110145400 ENOG411E5XM O64790,Q940K0,O22727,O64789,A0A1P8AN55,A0A1P8AN51,A0A1P8AS68,Q2V4G0 DRL17_ARATH,DRL15_ARATH,DRL16_ARATH,DRL18_ARATH,A0A1P8AN55_ARATH,A0A1P8AN51_ARATH,A0A1P8AS68_ARATH,Q2V4G0_ARATH Probable disease resistance protein At1g61300,Probable disease resistance protein At1g61180,Probable disease resistance protein At1g61190,Probable disease resistance protein At1g61310,LRR and NB-ARC domains-containing disease resistance protein FUNCTION: Probable disease resistance protein. {ECO:0000250}. 87132,101673,111532,105062,101434,98476,84091,102811 Probable disease resistance protein At1g61300,Probable disease resistance protein At1g61180,Probable disease resistance protein At1g61190,Probable disease resistance protein At1g61310,LRR and NB-ARC domains-containing disease resistance protein cytosol [GO:0005829]; plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ADP binding [GO:0043531]; defense response [GO:0006952] locus:2197739;,locus:2008510;,locus:2008440; AT1G61300,AT1G61180,AT1G61190,AT1G61310 Disease resistance protein NA NA NA NA NA NA NA ENOG411EMHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Armadillo/beta-catenin-like repeat Os11g0183800 protein A0A0P0Y018 A0A0P0Y018_ORYSJ Os11g0183800 OSNPB_110183800 ENOG411EMHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Kinesin-associated protein (KAP) NA NA NA NA NA NA NA ENOG411EMHD ABAP1 B7U179 ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 (ABAP1) FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). In association with TCP24, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. {ECO:0000250, ECO:0000269|PubMed:18818695}. PATHWAY: Protein modification; protein ubiquitination. 81361 ARMADILLO BTB ARABIDOPSIS PROTEIN 1 (ABAP1) cytoplasm [GO:0005737]; DNA replication preinitiation complex [GO:0031261]; nucleus [GO:0005634]; DNA-dependent DNA replication [GO:0006261]; negative regulation of cell proliferation [GO:0008285]; negative regulation of DNA-dependent DNA replication [GO:2000104]; protein ubiquitination [GO:0016567]; regulation of cell proliferation [GO:0042127] DEVELOPMENTAL STAGE: Detected in developing leaves during proliferation stage (9-day-old plants) and expression rapidly declines in leaves of 13 till 21-day-old plants. Also expressed during stomatal cell differentiation. {ECO:0000269|PubMed:18818695}. TISSUE SPECIFICITY: Weakly expressed in the emerging lateral roots and mainly expressed in the shoot apex, young leaves and flower buds. {ECO:0000269|PubMed:18818695}. locus:2179842; AT5G13060 BTB/POZ domain NA NA NA NA NA NA NA ENOG411DR46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nicotinate phosphoribosyltransferase (NAPRTase) family Os04g0429800 protein B9FF83 B9FF83_ORYSJ Os04g0429800 OsJ_14840 OSNPB_040429800 ENOG411DR47 MDC12.17 Q67YJ9,A0A1R7T396 Q67YJ9_ARATH,A0A1R7T396_ARATH Tetratricopeptide repeat (TPR)-containing protein (Uncharacterized protein At5g63200),Tetratricopeptide repeat (TPR)-containing protein 71067,69236 Tetratricopeptide repeat (TPR)-containing protein (Uncharacterized protein At5g63200),Tetratricopeptide repeat (TPR)-containing protein locus:2162027; AT5G63200 Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DR44 PCMP-H59 Q9FI49 PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990 60036 Pentatricopeptide repeat-containing protein At5g50990 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2157368; AT5G50990 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DR45 SFC1 Q9M038 SFC1_ARATH Mitochondrial succinate-fumarate transporter 1 (AtMSFC1) FUNCTION: May transport cytoplasmic succinate, derived from fatty acid oxidation, into the mitochondrial matrix in exchange of fumarate during lipid mobilization in seed germination. Conversion of seed-reserved triacylglycerols into sucrose is necessary for growth before the onset of photosynthesis and involves fatty acid beta-oxidation, the glyoxylate cycle and gluconeogenesis. {ECO:0000269|PubMed:12527366}. R-ATH-70263;R-ATH-75105; 33991 Mitochondrial succinate-fumarate transporter 1 (AtMSFC1) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; succinate transmembrane transporter activity [GO:0015141]; fumarate transport [GO:0015741]; mitochondrial transport [GO:0006839]; succinate transport [GO:0015744] TISSUE SPECIFICITY: Expressed in root tips, cotyledons, hypocotyls, leaves, trichomes, stems, flowers, carpels, anthers, pollen and abcission zone of siliques. {ECO:0000269|PubMed:12527366}. locus:2179152; AT5G01340 mitochondrial Os03g0292200 protein Q0DSS1 Q0DSS1_ORYSJ Os03g0292200 OSNPB_030292200 ENOG411DR42 T1B9.14 Q9SFU9,Q9FJK4,A0A1P8BC76 Q9SFU9_ARATH,Q9FJK4_ARATH,A0A1P8BC76_ARATH At3g07190 (B-cell receptor-associated protein 31-like protein) (T1B9.14 protein),B-cell receptor-associated protein 31-like protein (Expressed protein) (Similarity to unknown protein),B-cell receptor-associated protein 31-like protein 25041,24877,16679 At3g07190 (B-cell receptor-associated protein 31-like protein) (T1B9.14 protein),B-cell receptor-associated protein 31-like protein (Expressed protein) (Similarity to unknown protein),B-cell receptor-associated protein 31-like protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; protein localization to endoplasmic reticulum exit site [GO:0070973],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular protein transport [GO:0006886] locus:2098520;,locus:2152501; AT3G07190,AT5G48660 b-cell receptor-associated protein B-cell receptor-associated protein 31-like containing protein, expressed (Os03g0848400 protein) (cDNA clone:001-010-B10, full insert sequence) (cDNA clone:J013111M09, full insert sequence),Os07g0291200 protein (cDNA clone:J013001B09, full insert sequence) Q852C6,B7EAA3 Q852C6_ORYSJ,B7EAA3_ORYSJ Os03g0848400 LOC_Os03g63110 Os03g0848400 OsJ_13364 OSJNBb0096M04.115 OSNPB_030848400,Os07g0291200 Os07g0291200 OSNPB_070291200 ENOG411DR43 PAP9,PAP13 Q9M2P7,Q8S9M1,F4IM05,A8MRU9 PAP9_ARATH,PAP13_ARATH,F4IM05_ARATH,A8MRU9_ARATH Probable plastid-lipid-associated protein 9, chloroplastic (Fibrillin-7a) (AtPGL34),Probable plastid-lipid-associated protein 13, chloroplastic (Fibrillin-7b) (AtPGL30),Plastid-lipid associated protein PAP / fibrillin family protein 34091,32986,22727,29668 Probable plastid-lipid-associated protein 9, chloroplastic (Fibrillin-7a) (AtPGL34),Probable plastid-lipid-associated protein 13, chloroplastic (Fibrillin-7b) (AtPGL30),Plastid-lipid associated protein PAP / fibrillin family protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; plastoglobule [GO:0010287]; thylakoid [GO:0009579] locus:2095803;,locus:2060020; AT3G58010,AT2G42130 Plastid-lipid-Associated Protein OSJNBa0087O24.10 protein (Os04g0665800 protein) (cDNA clone:J033076K20, full insert sequence),Os04g0665800 protein Q84P62,A0A0P0WGB3 Q84P62_ORYSJ,A0A0P0WGB3_ORYSJ Os04g0665800 OSJNBa0087O24.10 OSNPB_040665800,Os04g0665800 OSNPB_040665800 ENOG411DR40 TRM19 A0A1I9LP47,F4JAG7 A0A1I9LP47_ARATH,F4JAG7_ARATH Afadin 106781,103272 Afadin integral component of membrane [GO:0016021],plasma membrane [GO:0005886] locus:2083981; AT3G53540 Protein of unknown function (DUF3741) Os03g0280700 protein A0A0P0VWP6 A0A0P0VWP6_ORYSJ Os03g0280700 OSNPB_030280700 ENOG411DR41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os09g0442100 protein (Putative Avr9/Cf-9 rapidly elicited protein 264) (cDNA clone:001-007-H12, full insert sequence) Q67UU7 Q67UU7_ORYSJ Os09g0442100 OSNPB_090442100 P0046G12.16 ENOG411DR48 P4H13,P4H9 F4ILF8,Q8VZJ7 P4H13_ARATH,P4H9_ARATH Prolyl 4-hydroxylase 13 (AtP4H13) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 9 (AtP4H9) (EC 1.14.11.2) DISRUPTION PHENOTYPE: Reduced root hair length and content of hydroxyproline in root cell walls. {ECO:0000269|PubMed:21680836}. FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. Possesses high affinity for leucine-rich repeat and proline-rich extensins of root cell walls that are essential for root hair development. Hydroxyprolines define the subsequent O-glycosylation sites by arabinosyltransferases which elongate the O-arabinosides on extensins. {ECO:0000269|PubMed:21680836}.,FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. {ECO:0000250|UniProtKB:Q9ZW86}. ARA:AT4G33910-MONOMER; 1.14.11.2 31424,32279 Prolyl 4-hydroxylase 13 (AtP4H13) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 9 (AtP4H9) (EC 1.14.11.2) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656]; root hair cell development [GO:0080147],endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656] TISSUE SPECIFICITY: Expressed in epidermal root hair cells (trichoblasts) root hairless cells (atrichoblasts). {ECO:0000269|PubMed:21680836}. locus:1005716656;,locus:2118889; AT2G23096,AT4G33910 prolyl 4-hydroxylase Os03g0761900 protein (Prolyl 4-hydroxylase, putative, expressed) (Putative dioxygenase) (Putative hydroxylase subunit) Q94H92 Q94H92_ORYSJ LOC_Os03g55380 Os03g0761900 OSJNBa0002J24.9 OSJNBb0048A17.24 OSNPB_030761900 ENOG411DR49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os06g0314100 protein (Fragment) A0A0P0WW67 A0A0P0WW67_ORYSJ Os06g0314100 OSNPB_060314100 ENOG411DR4V PLA1 F4HX15,F4HX14 LPAI_ARATH,F4HX14_ARATH Phospholipase A I (AtPLA1) (EC 3.1.1.-),Phospholipase A I-like protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced basal level of jasmonic acid and exhibit increased susceptibility to the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:17475618}. FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Catalyzes the hydrolysis of the galactolipids monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG), and less efficiently the phoshpolipids phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidylserine (PS) and phosphatidylinositol (PI). Hydrolyzes phospholipids at both the sn-1 and sn-2 positions. Involved in basal jasmonic acid production and promotes resistance to the necrotrophic fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:17475618}. 3.1.1.- 145222,135221 Phospholipase A I (AtPLA1) (EC 3.1.1.-),Phospholipase A I-like protein chloroplast [GO:0009507]; acylglycerol lipase activity [GO:0047372]; phospholipase activity [GO:0004620]; defense response to fungus [GO:0050832]; jasmonic acid biosynthetic process [GO:0009695]; lipid catabolic process [GO:0016042],galactolipase activity [GO:0047714]; phospholipase activity [GO:0004620]; jasmonic acid biosynthetic process [GO:0009695]; lipid catabolic process [GO:0016042]; response to fungus [GO:0009620] locus:2036808; AT1G61850 Patatin-like phospholipase Os07g0520900 protein,Patatin (EC 3.1.1.-) A0A0P0X6U1,A0A0P0X6Z4 A0A0P0X6U1_ORYSJ,A0A0P0X6Z4_ORYSJ Os07g0520900 OSNPB_070520900 FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411DR4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase NA NA NA NA NA NA NA ENOG411DR4T PSD2,PSD3 F4KAK5,A4GNA8,A0A1P8BCF8 PSD2_ARATH,PSD3_ARATH,A0A1P8BCF8_ARATH Phosphatidylserine decarboxylase proenzyme 2 (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 2 beta chain; Phosphatidylserine decarboxylase 2 alpha chain],Phosphatidylserine decarboxylase proenzyme 3 (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 3 beta chain; Phosphatidylserine decarboxylase 3 alpha chain],Phosphatidylserine decarboxylase 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17449644}. FUNCTION: Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Contributes only to a minor proportion of PtdEtn production. {ECO:0000255|HAMAP-Rule:MF_03209, ECO:0000269|PubMed:17449644}. PATHWAY: Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2. {ECO:0000255|HAMAP-Rule:MF_03209}. ARA:AT4G25970-MONOMER;MetaCyc:AT4G25970-MONOMER; 4.1.1.65 71000,70352,65729 Phosphatidylserine decarboxylase proenzyme 2 (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 2 beta chain; Phosphatidylserine decarboxylase 2 alpha chain],Phosphatidylserine decarboxylase proenzyme 3 (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 3 beta chain; Phosphatidylserine decarboxylase 3 alpha chain],Phosphatidylserine decarboxylase 2 plant-type vacuole membrane [GO:0009705]; calcium ion binding [GO:0005509]; phosphatidylserine decarboxylase activity [GO:0004609]; phosphatidylethanolamine biosynthetic process [GO:0006646],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; calcium ion binding [GO:0005509]; phosphatidylserine decarboxylase activity [GO:0004609]; phosphatidylethanolamine biosynthetic process [GO:0006646],calcium ion binding [GO:0005509]; phosphatidylserine decarboxylase activity [GO:0004609]; phospholipid biosynthetic process [GO:0008654] TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in leaves. {ECO:0000269|PubMed:17449644}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:17449644}. locus:2175574;,locus:2120820; AT5G57190,AT4G25970 phosphatidylserine decarboxylase Phosphatidylserine decarboxylase proenzyme 2 (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase 2 beta chain; Phosphatidylserine decarboxylase 2 alpha chain],Os01g0959800 protein (Fragment) Q5JN42,A0A0P0VD86 PSD2_ORYSJ,A0A0P0VD86_ORYSJ PSD2 Os01g0959800 LOC_Os01g72940 P0401G10.19,Os01g0959800 OSNPB_010959800 FUNCTION: Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. {ECO:0000255|HAMAP-Rule:MF_03209}. ENOG411DR4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ataxia telangiectasia mutated NA NA NA NA NA NA NA ENOG411DR4R WAV3 Q9LTA6 Q9LTA6_ARATH At5g49665 (Retroelement pol polyprotein-like) (WAVY GROWTH3) (Zinc finger (C3HC4-type RING finger) family protein) FUNCTION: E3 ubiquitin-protein ligase involved in the regulation of root growth. Acts as positive regulator of root gravitropism. Possesses E3 protein ligase activity in vitro. {ECO:0000269|PubMed:22122664}. 80236 At5g49665 (Retroelement pol polyprotein-like) (WAVY GROWTH3) (Zinc finger (C3HC4-type RING finger) family protein) plasma membrane [GO:0005886] locus:504954897; AT5G49665 zinc finger family protein Os04g0101800 protein A0A0P0W5W4 A0A0P0W5W4_ORYSJ Os04g0101800 OSNPB_040101800 ENOG411DR4S VAMP721,VAMP725,VAMP722,VAMP723,VAMP726,SAR1,VAMP728 Q9ZTW3,O48850,P47192,Q8VY69,Q9MAS5,B9DH97,A0A1P8AS81,Q6AWV9,A0A1P8AY77,F4J7T4,F4IVQ2 VA721_ARATH,VA725_ARATH,VA722_ARATH,VA723_ARATH,VA726_ARATH,B9DH97_ARATH,A0A1P8AS81_ARATH,Q6AWV9_ARATH,A0A1P8AY77_ARATH,F4J7T4_ARATH,F4IVQ2_ARATH Vesicle-associated membrane protein 721 (AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B),Vesicle-associated membrane protein 725 (AtVAMP725),Vesicle-associated membrane protein 722 (AtVAMP722) (Synaptobrevin-related protein 1),Vesicle-associated membrane protein 723 (AtVAMP723),Putative vesicle-associated membrane protein 726 (AtVAMP726),AT2G33120 protein (Synaptobrevin-related protein 1),Vesicle-associated membrane protein 721,At3g24890 (Vesicle-associated membrane protein 728),Vesicle-associated membrane protein 723,Vesicle-associated membrane protein 728,Synaptobrevin-related protein 1 FUNCTION: Involved in the targeting and/or fusion of transport vesicles to their target membrane. {ECO:0000305|PubMed:11115874}.,FUNCTION: Involved in the targeting and/or fusion of transport vesicles to their target membrane. {ECO:0000250}. 24765,32691,24928,24493,24873,25812,16130,8523,21353,14528,15922 Vesicle-associated membrane protein 721 (AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B),Vesicle-associated membrane protein 725 (AtVAMP725),Vesicle-associated membrane protein 722 (AtVAMP722) (Synaptobrevin-related protein 1),Vesicle-associated membrane protein 723 (AtVAMP723),Putative vesicle-associated membrane protein 726 (AtVAMP726),AT2G33120 protein (Synaptobrevin-related protein 1),Vesicle-associated membrane protein 721,At3g24890 (Vesicle-associated membrane protein 728),Vesicle-associated membrane protein 723,Vesicle-associated membrane protein 728,Synaptobrevin-related protein 1 cell plate [GO:0009504]; early endosome membrane [GO:0031901]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; exocytosis [GO:0006887]; protein targeting to plasma membrane [GO:0072661]; vesicle fusion [GO:0006906],early endosome membrane [GO:0031901]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],early endosome membrane [GO:0031901]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],chloroplast [GO:0009507]; early endosome membrane [GO:0031901]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],cell plate [GO:0009504]; endosome [GO:0005768]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; protein targeting to plasma membrane [GO:0072661]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; vesicle fusion [GO:0006906] TISSUE SPECIFICITY: Expressed in flowers, leaves, stems and roots. {ECO:0000269|PubMed:15342965}.,TISSUE SPECIFICITY: Highly expressed in stems and roots. Detected in flowers and leaves. {ECO:0000269|PubMed:15342965}. locus:2010642;,locus:2046367;,locus:2046490;,locus:2010627;,locus:2046595;,locus:2087318; AT1G04750,AT2G32670,AT2G33120,AT2G33110,AT1G04760,AT3G24890 vesicle-associated membrane protein Os07g0194000 protein (Synaptobrevin 1) (Synaptobrevin-like protein) (cDNA clone:001-035-F10, full insert sequence) (cDNA clone:006-311-C02, full insert sequence) (cDNA clone:J023107K01, full insert sequence),Os03g0803000 protein (Synaptobrevin-like protein) (Vesicle-associated membrane protein 724, putative, expressed) Q69WS1,Q84SZ1 Q69WS1_ORYSJ,Q84SZ1_ORYSJ spb1 Os07g0194000 OJ1118_E12.19 OSNPB_070194000,LOC_Os03g58840 Os03g0803000 OsJ_13000 OSJNBa0087C10.9 OSNPB_030803000 ENOG411DR4P CYP26-2 F4HTT6,A0A1P8APN5 CP26B_ARATH,A0A1P8APN5_ARATH Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic (PPIase CYP26-2) (EC 5.2.1.8) (Cyclophilin of 26 kDa 2) (Cyclophilin-26-2),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 34375,30374 Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic (PPIase CYP26-2) (EC 5.2.1.8) (Cyclophilin of 26 kDa 2) (Cyclophilin-26-2),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. Lower levels of expression in roots. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2031546; AT1G74070 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q657T1 Q657T1_ORYSJ Os01g0111100 OSNPB_010111100 P0439B06.20 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DR4Q RUG1 Q8GWF2,A0A1P8BFY3 Q8GWF2_ARATH,A0A1P8BFY3_ARATH Putative UVB-resistance protein UVR8 (Regulator of chromosome condensation (RCC1) family protein) (Uncharacterized protein At5g08710/T2K12_60),Regulator of chromosome condensation (RCC1) family protein 45559,34980 Putative UVB-resistance protein UVR8 (Regulator of chromosome condensation (RCC1) family protein) (Uncharacterized protein At5g08710/T2K12_60),Regulator of chromosome condensation (RCC1) family protein locus:504956339; AT5G08710 E3 ubiquitin-protein ligase Os11g0545800 protein B9GB42 B9GB42_ORYSJ Os11g0545800 OsJ_34191 OSNPB_110545800 ENOG411DR4Z PPC3-1.2,PAPP2C Q9S9Z7,Q9LME4,Q9SIU8,Q9LDA7,Q93YW5,A0A1P8B3K8,A0A1P8ARA4,A0A1P8B3J3,F4I1B4 P2C10_ARATH,P2C09_ARATH,P2C20_ARATH,P2C39_ARATH,P2C58_ARATH,A0A1P8B3K8_ARATH,A0A1P8ARA4_ARATH,A0A1P8B3J3_ARATH,F4I1B4_ARATH Probable protein phosphatase 2C 10 (AtPP2C10) (EC 3.1.3.16),Probable protein phosphatase 2C 9 (AtPP2C09) (EC 3.1.3.16) (Phytochrome-associated protein phosphatase 2C) (PAPP2C),Probable protein phosphatase 2C 20 (AtPP2C20) (EC 3.1.3.16) (AtPPC3;1.2),Probable protein phosphatase 2C 39 (AtPP2C39) (EC 3.1.3.16),Probable protein phosphatase 2C 58 (AtPP2C58) (EC 3.1.3.16),Protein phosphatase 2C family protein,Phytochrome-associated protein phosphatase type 2C DISRUPTION PHENOTYPE: Abnormal hypocotyl elongation under continuous red light. {ECO:0000269|PubMed:16705748}. Resistant to bacterial infection-J. Lee-2009 FUNCTION: Involved in the regulation of phytochrome signaling. May regulate phytochrome-interacting factor 3 (PIF3) through the dephosphorylation of phytochrome. {ECO:0000269|PubMed:18564962}.,FUNCTION: May be involved in defense signaling. 3.1.3.16 30984,30722,31847,31630,31018,28778,26752,27791,31435 Probable protein phosphatase 2C 10 (AtPP2C10) (EC 3.1.3.16),Probable protein phosphatase 2C 9 (AtPP2C09) (EC 3.1.3.16) (Phytochrome-associated protein phosphatase 2C) (PAPP2C),Probable protein phosphatase 2C 20 (AtPP2C20) (EC 3.1.3.16) (AtPPC3;1.2),Probable protein phosphatase 2C 39 (AtPP2C39) (EC 3.1.3.16),Probable protein phosphatase 2C 58 (AtPP2C58) (EC 3.1.3.16),Protein phosphatase 2C family protein,Phytochrome-associated protein phosphatase type 2C plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722],nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine phosphatase activity [GO:0004722]; protein dephosphorylation [GO:0006470]; red light signaling pathway [GO:0010161] locus:2008341;,locus:2046046;,locus:2087095;,locus:2121373;,locus:2196531; AT1G34750,AT1G22280,AT2G20630,AT3G15260,AT4G28400 phosphatase 2C Probable protein phosphatase 2C 62 (OsPP2C62) (EC 3.1.3.16),Probable protein phosphatase 2C 44 (OsPP2C44) (EC 3.1.3.16),Probable protein phosphatase 2C 41 (OsPP2C41) (EC 3.1.3.16) Q0D673,Q0JAA0,Q7XQU7 P2C62_ORYSJ,P2C44_ORYSJ,P2C41_ORYSJ Os07g0507000 LOC_Os07g32380 OsJ_023427 OSJNBb0062D12.125,Os04g0609600 LOC_Os04g52000 OsJ_16105 OSJNBa0085I10.2,Os04g0452000 Os04g0451900 LOC_Os04g37904 OsJ_014406 OSJNBa0086B14.22/OSJNBa0086B14.21 ENOG411DR4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat-containing protein NA NA NA NA NA NA NA ENOG411DR4Y RUK F4JY37,Q9C8V1 RUK_ARATH,Q9C8V1_ARATH Serine/threonine-protein kinase RUNKEL (Protein EMBRYO DEFECTIVE 3013) (Protein RUNKEL) (EC 2.7.11.1),Serine/Threonine-kinase ULK4-like protein (Uncharacterized protein T3M13.4) DISRUPTION PHENOTYPE: Seedling lethal (PubMed:19268593). Abnormal cell division with defective cytokinesis due to abnormal phragmoplast organization and arrested cell plate expansion, leading to enlarged cells and nuclei as well as incomplete cell walls (PubMed:11089872, PubMed:19268593). In metaphase and anaphase, enlarged cells with several mitotic spindles or a single greatly enlarged spindle (PubMed:19268593). Impaired endosperm development with altered cellularisation (PubMed:12421698, PubMed:23451828). Cellularization defects caused by disorganized radial microtubules (MT) arrays in seedlings and adult tissues, as well as during male meiocyte development. Irregular and incomplete or absent intersporal cell walls in male tetrads, resulting in abnormal pollen and reduced fertility. Sterile and aborted ovules (PubMed:23451828). {ECO:0000269|PubMed:11089872, ECO:0000269|PubMed:12421698, ECO:0000269|PubMed:19268593, ECO:0000269|PubMed:23451828}. seedling lethal; cytokinesis abnormal. Embryo defective; Gametophyte defective (inferred)-D. Meinke-2004 FUNCTION: Essential protein that regulates phragmoplast microtubule organization during cell plate expansion in cytokinesis during cell division, both somatic and syncytial (PubMed:11089872, PubMed:19268593, PubMed:23451828). Required for endosperm cellularisation (PubMed:12421698, PubMed:23451828). In pollen development, involved in cellularisation during microsporogenesis by regulating radial microtubules (MT) organization in microspore mother cells (PubMed:23451828). Seems to not have kinase activity (PubMed:19268593). {ECO:0000269|PubMed:11089872, ECO:0000269|PubMed:12421698, ECO:0000269|PubMed:19268593, ECO:0000269|PubMed:23451828}. 2.7.11.1 152283,55153 Serine/threonine-protein kinase RUNKEL (Protein EMBRYO DEFECTIVE 3013) (Protein RUNKEL) (EC 2.7.11.1),Serine/Threonine-kinase ULK4-like protein (Uncharacterized protein T3M13.4) microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasmodesma [GO:0009506]; preprophase band [GO:0009574]; spindle [GO:0005819]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; transferase activity [GO:0016740]; cellularization [GO:0007349]; cytokinesis by cell plate formation [GO:0000911]; endosperm cellularization [GO:0010342]; microsporogenesis [GO:0009556]; phragmoplast assembly [GO:0000914]; pollen development [GO:0009555]; protein phosphorylation [GO:0006468]; radial microtubular system formation [GO:0010245],kinase activity [GO:0016301] TISSUE SPECIFICITY: Expressed in proliferating tissues of seedlings, lateral roots, young rosette leaves, siliques, flowers, embryos and stems (including apical meristem). {ECO:0000269|PubMed:19268593, ECO:0000269|PubMed:23451828}. locus:2180044;,locus:2203822; AT5G18700,AT1G33940 serine threonine-protein kinase Os01g0259400 protein (Putative FUSED serine/threonine kinase) Q5NAR7 Q5NAR7_ORYSJ Os01g0259400 OSNPB_010259400 P0462H08.34 P0699D11.2 ENOG411DR4F PUB9,PUB46 Q9SRT0,Q3E9F7,Q3EBB0 PUB9_ARATH,PUB46_ARATH,Q3EBB0_ARATH U-box domain-containing protein 9 (EC 2.3.2.27) (Plant U-box protein 9) (RING-type E3 ubiquitin transferase PUB9),Putative U-box domain-containing protein 46 (EC 2.3.2.27) (Plant U-box protein 46) (RING-type E3 ubiquitin transferase PUB46),Plant U-box 9 DISRUPTION PHENOTYPE: Reduced abscisic acid (ABA) sensitivity during seed germination. {ECO:0000269|PubMed:18552232}. FUNCTION: Functions as an E3 ubiquitin ligase (By similarity). May be involved in the abscisic acid-mediated signaling pathway, at least during germination. {ECO:0000250, ECO:0000269|PubMed:18552232}.,FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 51279,50872,36131 U-box domain-containing protein 9 (EC 2.3.2.27) (Plant U-box protein 9) (RING-type E3 ubiquitin transferase PUB9),Putative U-box domain-containing protein 46 (EC 2.3.2.27) (Plant U-box protein 46) (RING-type E3 ubiquitin transferase PUB46),Plant U-box 9 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; transmembrane receptor protein serine/threonine kinase binding [GO:0070696]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to abscisic acid stimulus [GO:0071215]; protein ubiquitination [GO:0016567],ubiquitin-protein transferase activity [GO:0004842]; cellular response to water deprivation [GO:0042631] locus:2079706;,locus:2146183; AT3G07360,AT5G18320 U-box domain-containing protein Os02g0488600 protein (Os02g0488701 protein) (Fragment) C7IYS0 C7IYS0_ORYSJ Os02g0488600 Os02g0488701 OSNPB_020488600 ENOG411DR4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Potassium transporter 22 (OsHAK22),Os07g0102100 protein Q69L87,A0A0P0X1C7 HAK22_ORYSJ,A0A0P0X1C7_ORYSJ HAK22 Os07g0102100 LOC_Os07g01214 B1026C12.31-1 B1026C12.31-2,Os07g0102100 OSNPB_070102100 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DR4D Q9FWY8 Q9FWY8_ARATH GATA transcription factor-like protein (T14P4.2 protein) (Uncharacterized protein At1g02700) 27455 GATA transcription factor-like protein (T14P4.2 protein) (Uncharacterized protein At1g02700) locus:2196035; AT1G02700 NA Os07g0675200 protein (Os07g0675250 protein) (cDNA clone:001-118-E05, full insert sequence) Q6ZDX1 Q6ZDX1_ORYSJ P0618H09.24 Os07g0675200 Os07g0675250 OSNPB_070675200 P0037D09.26 ENOG411DR4E EXO70B1 Q9FGH9 E70B1_ARATH Exocyst complex component EXO70B1 (AtExo70b1) (Exocyst subunit Exo70 family protein B1) DISRUPTION PHENOTYPE: Twisted leaves with small spontaneous lesions, early yellowing of leaves and anthocyanin accumulation defects. Chlorotic shoots. Retarded growth with wrinkled rosette leaves under long-day growth conditions. Impaired abscisic acid (ABA)-mediated and mannitol (drought)-promoted stomatal closure (PubMed:27956469). {ECO:0000269|PubMed:23944713, ECO:0000269|PubMed:27956469}. FUNCTION: Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole. Regulates autophagosome formation and autophagy-related Golgi-independent import into the vacuole. Positive regulator of both abscisic acid (ABA)-promoted and mannitol (drought)-promoted stomatal closure (PubMed:27956469). {ECO:0000269|PubMed:23944713, ECO:0000269|PubMed:27956469}. R-ATH-5620916; 70640 Exocyst complex component EXO70B1 (AtExo70b1) (Exocyst subunit Exo70 family protein B1) cytosol [GO:0005829]; endomembrane system [GO:0012505]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; phagocytic vesicle [GO:0045335]; plasma membrane [GO:0005886]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; exocytosis [GO:0006887]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; regulation of stomatal closure [GO:0090333]; response to water deprivation [GO:0009414] locus:2171208; AT5G58430 Exo70 exocyst complex subunit Os05g0473500 protein,Leucine zipper protein-like (Os01g0827500 protein) (cDNA clone:J013133L14, full insert sequence),Os05g0473500 protein (Fragment) Q0DHD7,Q941X1,A0A0P0WNH6 Q0DHD7_ORYSJ,Q941X1_ORYSJ,A0A0P0WNH6_ORYSJ Os05g0473500 Os05g0473500 OSNPB_050473500,Os01g0827500 B1088C09.7 OsJ_03934 OSNPB_010827500,Os05g0473500 OSNPB_050473500 ENOG411DR4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase C45 acyl-coenzyme A 6-aminopenicillanic acid acyl-transferase Os01g0221900 protein A0A0P0UZY7 A0A0P0UZY7_ORYSJ Os01g0221900 OSNPB_010221900 ENOG411DR4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pentatricopeptide repeat-containing protein At2g30100 Os05g0353300 protein Q5W767 Q5W767_ORYSJ Os05g0353300 OJ1320_D10.7 OSNPB_050353300 ENOG411DR4A COBL7,COBL8 Q8GZ17,Q9LIB6 COBL7_ARATH,COBL8_ARATH COBRA-like protein 7,COBRA-like protein 8 72602,72023 COBRA-like protein 7,COBRA-like protein 8 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; cell growth [GO:0016049]; cellulose microfibril organization [GO:0010215] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12376623}. locus:2130100;,locus:2093673; AT4G16120,AT3G16860 cobra-like protein COBRA-like protein (Os06g0685100 protein),Cell wall protein-like (Os07g0690900 protein),COBRA-like protein 7, putative, expressed (Os03g0301200 protein),Os03g0301200 protein Q655F2,Q8H3Y9,Q10MP1,A0A0P0VX79 Q655F2_ORYSJ,Q8H3Y9_ORYSJ,Q10MP1_ORYSJ,A0A0P0VX79_ORYSJ Os06g0685100 OsJ_22409 OSNPB_060685100 P0009H10.35,P0597G07.128 Os07g0690900 OsJ_25669 OSNPB_070690900,Os03g0301200 LOC_Os03g18910 OsJ_10523 OSNPB_030301200,Os03g0301200 OSNPB_030301200 ENOG411DR4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase GDSL-like Lipase/Acylhydrolase family protein, expressed (Os10g0140300 protein) (cDNA clone:J023107L07, full insert sequence) Q10A53 Q10A53_ORYSJ LOC_Os10g05088 Os10g0140300 OSNPB_100140300 ENOG411DR4M C0LGI2 Y1677_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g67720 (EC 2.7.11.1) 2.7.11.1 103753 Probable LRR receptor-like serine/threonine-protein kinase At1g67720 (EC 2.7.11.1) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2008565; AT1G67720 LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DR4J PEX22 Q9LSX7 PEX22_ARATH Peroxisome biogenesis protein 22 (Peroxin-22) (AtPEX22) FUNCTION: May tethered PEX4 to the peroxisome membrane and may be involved in a late step of the matrix protein import. Does not play a role in the biogenesis of the peroxisomal membrane. {ECO:0000269|PubMed:16272432, ECO:0000269|PubMed:19246395}. 31399 Peroxisome biogenesis protein 22 (Peroxin-22) (AtPEX22) integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; peroxisome organization [GO:0007031]; protein transport [GO:0015031] locus:2093029; AT3G21865 peroxisome biogenesis protein 22-like Os04g0672800 protein (cDNA clone:J013151L20, full insert sequence),Os04g0629000 protein (Fragment),Os04g0629000 protein Q0J945,Q0J9V9,A0A0P0WF94,A0A0P0WF33 Q0J945_ORYSJ,Q0J9V9_ORYSJ,A0A0P0WF94_ORYSJ,A0A0P0WF33_ORYSJ Os04g0672800 Os04g0672800 OSNPB_040672800,Os04g0629000 Os04g0629000 OSNPB_040629000,Os04g0629000 OSNPB_040629000 ENOG411DR4K Q8RXJ0 Q8RXJ0_ARATH Kinetochore protein (Uncharacterized protein At1g61000) FUNCTION: Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division. {ECO:0000305|PubMed:29356153}. 50532 Kinetochore protein (Uncharacterized protein At1g61000) chromosome, centromeric region [GO:0000775]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; mitotic cell cycle [GO:0000278] locus:2206071; AT1G61000 Kinetochore protein Os08g0163100 protein,Nuf2 family protein, expressed (Os03g0577100 protein) Q7EY09,Q10HT0 Q7EY09_ORYSJ,Q10HT0_ORYSJ OJ9990_A01.113 Os08g0163100 OSNPB_080163100,Os03g0577100 LOC_Os03g38010 Os03g0577100 OsJ_11525 OSNPB_030577100 ENOG411DR4H Q9LPC4 PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970 46077 Pentatricopeptide repeat-containing protein At1g01970 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2025442; AT1G01970 Pentatricopeptide repeat-containing protein Os07g0661900 protein (Pentatricopeptide (PPR)repeat-containing protein-like) (cDNA clone:J023018E21, full insert sequence) Q8H2U4 Q8H2U4_ORYSJ P0453E03.112 Os07g0661900 OSNPB_070661900 ENOG411DR4I T21J18_40 Q9M305,F4IXT2 Q9M305_ARATH,F4IXT2_ARATH ATP/DNA binding protein (Uncharacterized protein T21J18_40),DNA-binding protein 215803,27655 ATP/DNA binding protein (Uncharacterized protein T21J18_40),DNA-binding protein DNA binding [GO:0003677] locus:2099418;,locus:2091333; AT3G48770,AT3G28020 NA Os11g0514100 protein A0A0P0Y3G6 A0A0P0Y3G6_ORYSJ Os11g0514100 OSNPB_110514100 ENOG411EMHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARM NA NA NA NA NA NA NA ENOG411E1IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dof zinc finger protein Dof zinc finger protein 2 (OsDof2),Os07g0145800 protein,Os09g0471525 protein B9F1L8,A3BGJ4,A0A0P0XN17 DOF2_ORYSJ,A3BGJ4_ORYSJ,A0A0P0XN17_ORYSJ DOF2 Os02g0673700 LOC_Os02g45200 OsJ_07904 P0657H12.10,Os07g0145800 OsJ_23078 OSNPB_070145800,Os09g0471525 OSNPB_090471525 FUNCTION: Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. ENOG411DS7Z GA1 Q38802 KSA_ARATH Ent-copalyl diphosphate synthase, chloroplastic (AtCPS) (Ent-CDP synthase) (EC 5.5.1.13) (Ent-kaurene synthase A) (KSA) (Protein GA REQUIRING 1) GA applications restored trichome initiation although GA concentrations exceeding 10 ;M caused a decrease rather than a further increase in trichome production - an effect also seen with wild-type plants. At GA concentrations exceeding 100 ;M a reduction in trichome production on cauline leaves and branches was observed.,Mutant flowers are glabrous.,Non-flowering defect.,Nongerminating male sterile.,ABA levels showed light dependence in the mutant.,Red light irradiation reduced the expression levels of two DELLA genes GAI and RGA by threefold to fourfold in this mutant.,The germination frequency of ga1 mutant seeds showed light dependence in the presence of low to moderate concentrations of exogenous GA3. Under PHYB-dependent germination conditions (1 h of imbibition followed by a pulse of red or far-red light) the germination frequency of the ga1 mutant reached virtually 100% in the presence of 50 μMGA3 irrespective of light conditions. However at concentrations of <50 μM GA3 the germination frequency was higher in ga1 mutant seeds irradiated with red light versus those irradiated with far-red light.,Does not undergo stem elongation.,GA-signaling promoting root and leaf expansion is not completely abolished.,No bolting.,No increase of germination or restoration of male fertility compared to the single ga1-3 mutant.,Rescue of the nonflowering phenotype of ga1-3.,Irrespective of the light conditions a reduction of the expression levels of two DELLA genes GAI and RGA was measured in this double mutant.,The double mutant germinates almost 100% in response to even 5 μMGA3 irrespective of light conditions.,Partially restored stem height (59% of Ler wild type).,Early flowering.,Longer carpels than those of the ga1-3 single mutant.,Stems are 32% taller than that of wild type Ler.,Seeds unable to germinate without application of exogenous GA. Complete loss of germination without exogenous GA-F. Ausubel-1992 FUNCTION: Catalyzes the conversion of geranylgeranyl diphosphate to the gibberellin precursor ent-copalyl diphosphate. {ECO:0000269|PubMed:17457817, ECO:0000269|PubMed:20430888}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT4G02780-MONOMER;MetaCyc:AT4G02780-MONOMER; 5.5.1.13 93014 Ent-copalyl diphosphate synthase, chloroplastic (AtCPS) (Ent-CDP synthase) (EC 5.5.1.13) (Ent-kaurene synthase A) (KSA) (Protein GA REQUIRING 1) chloroplast [GO:0009507]; ent-copalyl diphosphate synthase activity [GO:0009905]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin biosynthetic process [GO:0009686] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and also in siliques. {ECO:0000269|PubMed:12566586}. locus:2140260; AT4G02780 diphosphate synthase Ent-copalyl diphosphate synthase 1, chloroplastic (Ent-CDP synthase 1) (OsCPS1) (OsCPS1ent) (EC 5.5.1.13) (Ent-kaurene synthase A) (OsCPS) Q6ET36 CPS1_ORYSJ CPS1 Os02g0278700 LOC_Os02g17780 P0444A09.11 FUNCTION: Catalyzes the conversion of geranylgeranyl diphosphate to the gibberellin precursor ent-copalyl diphosphate. {ECO:0000269|PubMed:15542489}. MISCELLANEOUS: 2 different ent-CDP synthases exist in rice, one being involved in gibberellin biosynthesis and the other in phytoalexins biosynthesis. ENOG411E1ID CRRSP56 Q8GXV7 CRR56_ARATH Cysteine-rich repeat secretory protein 56 (Plasmodesmata-located protein 1) (PDLP1) (plasmodesmata-located protein 1a) (PDLP1a) DISRUPTION PHENOTYPE: crrsp56 and crrsp11 double mutant shows altered protein diffusion (measured using GFP). In crrsp56, crrsp3 and crrsp11 triple mutant there is inhibition of GFLV 2BMP tubule formation. Virus cell-to-cell movement is negatively affected. There is a 22% reduction in mean surface area of infection foci by GFLV and an approximately 12 h delay in long distance movement in comparison to wild-type plants. There is also a systemic delay in systemic Cauliflower mosaic virus (CaMV) spread. Overexpression shows a reduced-growth phenotype that correlates with transgene copy number and cell-to-cell trafficking of GFP, used to measure protein transport, is significantly impaired. {ECO:0000269|PubMed:18215111, ECO:0000269|PubMed:20886105}. This mutant does not show any obvious abnormal growth or developmental phenotype.,The movement of GFP between cells is increased in this double mutant. FUNCTION: Modulates cell-to-cell trafficking. {ECO:0000269|PubMed:18215111}. 32607 Cysteine-rich repeat secretory protein 56 (Plasmodesmata-located protein 1) (PDLP1) (plasmodesmata-located protein 1a) (PDLP1a) integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; plasmodesmata-mediated intercellular transport [GO:0010497]; transport of virus in multicellular host [GO:0046739] TISSUE SPECIFICITY: Highly expressed in cell suspension. Expressed in epidermal and spongy mesophyll cells, and the cell wall interface at the base of the leaf trichome (at protein level). {ECO:0000269|PubMed:18215111, ECO:0000269|PubMed:19704520}. locus:2172492; AT5G43980 cysteine-rich repeat secretory protein NA NA NA NA NA NA NA ENOG411DS7R SCC2 A5HEI1 SCC2_ARATH Sister chromatid cohesion protein SCC2 (Protein EMBRYO DEFECTIVE 2773) (Protein SISTER-CHROMATID COHESION 2) (AtSCC2) DISRUPTION PHENOTYPE: Defective embryo arrested at preglobular/early globular stage with the formation of giant endosperm nuclei (PubMed:19228337, PubMed:15266054, PubMed:28137757). Suspensor overproliferation phenotype preceded by ectopic auxin maxima distribution (PubMed:28137757). Reduced sister chromatid cohesion (PubMed:19533160). In conditional RNAi plants, sterility, arising from several defects in meiotic chromosome organization (e.g. failure of homologous pairing, loss of sister-chromatid cohesion, mixed segregation of chromosomes and chromosome fragmentation) and leading to shrunken and inviable pollen grains, and degeneration of the embryo sac. In the meiocytes, aberrant distribution of the cohesin subunit SCC3 on chromosomes, and defects in chromosomal axis formation (PubMed:19228337). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:19228337, ECO:0000269|PubMed:19533160, ECO:0000269|PubMed:28137757}. homozygous are embryo lethal arrested at the globular stage and do not undergo transition to heart stage Embryo defective; Preglobular-D. Meinke-2007 FUNCTION: Essential protein required for cell fate determination during embryogenesis (PubMed:19228337, PubMed:15266054, PubMed:28137757). Involved in sister chromatid cohesion during meiosis and mitosis (PubMed:19228337, PubMed:19533160). Forms a complex with SCC4, which is required for the association of the cohesin complex with chromosomes (PubMed:28137757). Plays a structural role in chromatin, especially in centromere organization, chromosomal axis formation, and distribution of the cohesin subunit SCC3 on chromosomes (PubMed:19228337). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:19228337, ECO:0000269|PubMed:19533160, ECO:0000269|PubMed:28137757}. R-ATH-2470946; 206759 Sister chromatid cohesion protein SCC2 (Protein EMBRYO DEFECTIVE 2773) (Protein SISTER-CHROMATID COHESION 2) (AtSCC2) chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; metal ion binding [GO:0046872]; cell division [GO:0051301]; centromere complex assembly [GO:0034508]; embryo development ending in seed dormancy [GO:0009793]; meiotic sister chromatid cohesion [GO:0051177]; mitotic sister chromatid cohesion [GO:0007064]; regulation of gene expression [GO:0010468]; sister chromatid cohesion [GO:0007062] DEVELOPMENTAL STAGE: Detected throughout the embryo, covering all stages of development from pre-globular to torpedo stages. Also detected in the suspensor and endosperm. {ECO:0000269|PubMed:19228337}. TISSUE SPECIFICITY: Expressed in leaves, inflorescence and siliques. {ECO:0000269|PubMed:19228337}. locus:2180942; AT5G15540 sister chromatid cohesion Sister chromatid cohesion protein (Fragment) A0A0P0X1V3,A0A0P0X1S8 A0A0P0X1V3_ORYSJ,A0A0P0X1S8_ORYSJ Os07g0110400 OSNPB_070110400 ENOG411DS7P ABCB26 Q8RY46,A0A1P8ASG0 AB26B_ARATH,A0A1P8ASG0_ARATH ABC transporter B family member 26, chloroplastic (ABC transporter ABCB.26) (AtABCB26) (Antigen peptide transporter-like 1) (Transporter associated with antigen processing-like protein 1) (AtTAP1),Transporter associated with antigen processing protein 1 R-ATH-382556;R-ATH-983170; 78039,58046 ABC transporter B family member 26, chloroplastic (ABC transporter ABCB.26) (AtABCB26) (Antigen peptide transporter-like 1) (Transporter associated with antigen processing-like protein 1) (AtTAP1),Transporter associated with antigen processing protein 1 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2026790; AT1G70610 ABC transporter B family member 26 Os01g0911300 protein (Fragment) Q0JGQ4 Q0JGQ4_ORYSJ Os01g0911300 Os01g0911300 OSNPB_010911300 ENOG411DS7V ACX1.2,ACX1 Q9ZQP2,O65202,F4JMK8 ACO12_ARATH,ACOX1_ARATH,F4JMK8_ARATH Putative peroxisomal acyl-coenzyme A oxidase 1.2 (EC 1.3.3.6),Peroxisomal acyl-coenzyme A oxidase 1 (AOX 1) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX1),Acyl-coenzyme A oxidase severely impaired in jasmonate biosynthesis produced fewer seed-containing siliques and fewer viable seeds. JA level did not increase significantly in response to wounding more susceptible to the leaf-chewing insect Trichoplusia ni.,A sucrose-independent germination phenotype. Mutants have reduced medium- and long-chain Acyl-CoA enzyme activity. Lipid catabolism during germination and early post-germinative growth was unaltered in the acx1-1 mutant; seedling growth and establishment in the absence of an exogenous supply of sucrose was unaffected. Jasmonic acid accumulation was largely reduced upon wounding of mutant plants when compared to the wild type.,Double mutant seedlings were unable to catabolize seed storage lipids and accumulated long-chain acyl-CoAs. The acx1-1 acx2-1 seedlings were also unable to establish photosynthetic competency in the absence of an exogenous carbon supply a phenotype that is shared with a number of other Arabidopsis mutants disrupted in storage lipid breakdown. Germination frequency of the double mutant was significantly reduced compared with wild-type seeds. This was unaffected by the addition of exogenous sucrose but was improved by dormancy-breaking treatments such as cold stratification and after-ripening. Peroxisomes in the cotyledons were enlarged in double mutants while in single mutants (acx1-1 and acx2-1) peroxisomes were identical to the wild type.,Plants display decreased sensitivity to the inhibitory effect of indole-3-butyric acid (IBA) on root elongation while remaining sensitive to inhibitory concentrations of indole-3-acetic acid. They maintain their ability to initiate lateral roots in response to IBA. FUNCTION: Catalyzes the desaturation of acyl-CoAs to 2-trans-enoyl-CoAs. {ECO:0000250}.,FUNCTION: Catalyzes the desaturation of both long- and medium-chain acyl-CoAs to 2-trans-enoyl-CoAs. Most active with C14-CoA. Activity on long-chain mono-unsaturated substrates is 40% higher than with the corresponding saturated substrates. Seems to be an important factor in the general metabolism of root tips. May be involved in the biosynthesis of jasmonic acid. MetaCyc:AT4G16760-MONOMER; R-ATH-193368;R-ATH-2046106;R-ATH-389887;R-ATH-390247; 1.3.3.6; 1.3.3.6 74298,74302,72921 Putative peroxisomal acyl-coenzyme A oxidase 1.2 (EC 1.3.3.6),Peroxisomal acyl-coenzyme A oxidase 1 (AOX 1) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX1),Acyl-coenzyme A oxidase peroxisome [GO:0005777]; acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; flavin adenine dinucleotide binding [GO:0050660]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539],peroxisome [GO:0005777]; plasmodesma [GO:0009506]; acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; flavin adenine dinucleotide binding [GO:0050660]; fatty acid beta-oxidation [GO:0006635]; fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539]; jasmonic acid biosynthetic process [GO:0009695]; long-chain fatty acid metabolic process [GO:0001676]; response to cadmium ion [GO:0046686]; response to fungus [GO:0009620]; response to wounding [GO:0009611],peroxisome [GO:0005777]; acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid beta-oxidation [GO:0006635] DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak at day 2 and then declines to reach a basal level 4 days after sowing. {ECO:0000269|PubMed:10571860}. TISSUE SPECIFICITY: Expressed mainly in flowers and young seedlings. Lower expression in roots, leaves and bracts. {ECO:0000269|PubMed:10571860}. locus:2058779;,locus:2129121; AT2G35690,AT4G16760 acyl-coenzyme A oxidase Acyl-coenzyme A oxidase,Acyl-CoA oxidase-like (Os06g0103500 protein),Os06g0103500 protein (Fragment) Q8H631,Q5VRH3,A0A0N7KLD6 Q8H631_ORYSJ,Q5VRH3_ORYSJ,A0A0N7KLD6_ORYSJ Os06g0103500 OsJ_19813 OSJNBa0075G19.29-1 OSNPB_060103500,OSJNBa0075G19.29-2 Os06g0103500 OSNPB_060103500,Os06g0103500 OSNPB_060103500 ENOG411DS7F Q9ZVS4,Q9ZVS5 Q9ZVS4_ARATH,Q9ZVS5_ARATH Eukaryotic aspartyl protease family protein (F15K9.17 protein) (Uncharacterized protein At1g03220) (Uncharacterized protein F15K9.17),Eukaryotic aspartyl protease family protein (F15K9.16 protein) (Uncharacterized protein At1g03230) 45717,46148 Eukaryotic aspartyl protease family protein (F15K9.17 protein) (Uncharacterized protein At1g03220) (Uncharacterized protein F15K9.17),Eukaryotic aspartyl protease family protein (F15K9.16 protein) (Uncharacterized protein At1g03230) cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; response to salt stress [GO:0009651],cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]; response to salt stress [GO:0009651] locus:2014475;,locus:2014465; AT1G03220,AT1G03230 Basic 7S Os09g0428200 protein (Putative dermal glycoprotein, extracellular),Os05g0402900 protein,Os05g0403300 protein,Os05g0403000 protein,Os05g0403100 protein Q69L18,Q0DIB3,Q6AUL0,Q6AUL2,A0A0N7KKR2 Q69L18_ORYSJ,Q0DIB3_ORYSJ,Q6AUL0_ORYSJ,Q6AUL2_ORYSJ,A0A0N7KKR2_ORYSJ Os09g0428200 OJ1299_A11.42 OSNPB_090428200 P0689B09.5,Os05g0402900 Os05g0402900 OSNPB_050402900,Os05g0403300 OSJNBb0006J12.11 OSNPB_050403300,Os05g0403000 OsJ_18489 OSJNBb0006J12.9 OSNPB_050403000,Os05g0403100 OSNPB_050403100 ENOG411E288 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:K_tetra Os02g0612700 protein (Potassium channel tetramerisation domain-containing protein-like),Os09g0259701 protein (Fragment),Os02g0213700 protein (Fragment) Q6K625,A0A0P0XK19,A0A0P0VGF1 Q6K625_ORYSJ,A0A0P0XK19_ORYSJ,A0A0P0VGF1_ORYSJ Os02g0612700 OJ1004_A05.32 OSNPB_020612700,Os09g0259701 OSNPB_090259701,Os02g0213700 OSNPB_020213700 ENOG411E287 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os07g0119300 protein (Putative cytoskeletal protein-like protein) (cDNA clone:J023048M12, full insert sequence) Q7XIF1 Q7XIF1_ORYSJ P0022B05.109 Os07g0119300 OsJ_22904 OSNPB_070119300 ENOG411E281 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Cysteine-rich receptor-like protein kinase 6 (Cysteine-rich RLK6) (EC 2.7.11.-),Os07g0540800 protein Q0D5R3,A0A0P0X732 CRK6_ORYSJ,A0A0P0X732_ORYSJ CRK6 Os07g0541400 LOC_Os07g35690 OJ1008_E09.114 P0458H05.131,Os07g0540800 OSNPB_070540800 FUNCTION: Involved in disease resistance. Required for NPR1/NH1-mediated immunity to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). Required for the benzothiadiazole (BTH)-induced immune response. Possesses kinase activity in vitro. {ECO:0000269|PubMed:27176732}. ENOG411E283 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os01g0924933 protein A0A0P0VCC3 A0A0P0VCC3_ORYSJ Os01g0924933 OSNPB_010924933 ENOG411E28E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Lipase class 3 family protein, putative (Lipase, putative) (Os11g0298800 protein) Q53MI7 Q53MI7_ORYSJ Os11g0298800 LOC_Os11g19290 OsJ_33700 OSNPB_110298800 ENOG411E28F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0521800 protein,Os07g0521500 protein Q0D5Z7,Q0D600 Q0D5Z7_ORYSJ,Q0D600_ORYSJ Os07g0521800 Os07g0521800 OsJ_24486 OSNPB_070521800,Os07g0521500 Os07g0521500 OSNPB_070521500 ENOG411E28A PME46,PME24 Q9FF78,Q9SG77 PME46_ARATH,PME24_ARATH Probable pectinesterase/pectinesterase inhibitor 46 [Includes: Pectinesterase inhibitor 46 (Pectin methylesterase inhibitor 46); Pectinesterase 46 (PE 46) (EC 3.1.1.11) (Pectin methylesterase 46) (AtPME46)],Putative pectinesterase/pectinesterase inhibitor 24 [Includes: Pectinesterase inhibitor 24 (Pectin methylesterase inhibitor 24); Pectinesterase 24 (PE 24) (EC 3.1.1.11) (Pectin methylesterase 24) (AtPME24)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G04960-MONOMER;,ARA:AT3G10710-MONOMER; 3.1.1.11 62170,62103 Probable pectinesterase/pectinesterase inhibitor 46 [Includes: Pectinesterase inhibitor 46 (Pectin methylesterase inhibitor 46); Pectinesterase 46 (PE 46) (EC 3.1.1.11) (Pectin methylesterase 46) (AtPME46)],Putative pectinesterase/pectinesterase inhibitor 24 [Includes: Pectinesterase inhibitor 24 (Pectin methylesterase inhibitor 24); Pectinesterase 24 (PE 24) (EC 3.1.1.11) (Pectin methylesterase 24) (AtPME24)] cell periphery [GO:0071944]; cell wall [GO:0005618]; integral component of membrane [GO:0016021]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] locus:2175319;,locus:2103227; AT5G04960,AT3G10710 pectinesterase NA NA NA NA NA NA NA ENOG411E3CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glycine-rich RNA-binding protein 2 mitochondrial-like NA NA NA NA NA NA NA ENOG411E3DC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region Zinc-finger homeodomain protein 8 (OsZHD8),Os04g0434500 protein Q7X7N3,A0A0P0WAN4 ZHD8_ORYSJ,A0A0P0WAN4_ORYSJ ZHD8 Os04g0434500 LOC_Os04g35500 OSJNBa0088K19.15 OSJNBb0086G13.8,Os04g0434500 OSNPB_040434500 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411E3DE AHL3 Q9SB31 AHL3_ARATH AT-hook motif nuclear-localized protein 3 DISRUPTION PHENOTYPE: Misspecification of tissue boundaries between the xylem and procambium. {ECO:0000269|PubMed:23335615}. FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Acts redundantly with AHL4 to regulate the formation of tissue boundary between the xylem and procambium in the root meristem (PubMed:23335615). {ECO:0000250|UniProtKB:Q8VYJ2, ECO:0000269|PubMed:23335615}. 43014 AT-hook motif nuclear-localized protein 3 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein self-association [GO:0043621]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; xylem and phloem pattern formation [GO:0010051]; xylem development [GO:0010089] TISSUE SPECIFICITY: Expressed in both procambium and xylem precursors of the root meristem. Also detected in the endodermis in the late elongation zone and onwards. {ECO:0000269|PubMed:23335615}. locus:2122684; AT4G25320 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411E3DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os02g0741700 protein Q0DXP1 Q0DXP1_ORYSJ Os02g0741700 Os02g0741700 OSNPB_020741700 ENOG411E3DJ RBP1 Q9C652 RBP1_ARATH RNA-binding protein 1 (AtRBP1) FUNCTION: RNA binding protein. Can also bind in vitro to single-stranded DNA. {ECO:0000269|PubMed:10805591}. 40341 RNA-binding protein 1 (AtRBP1) mRNA binding [GO:0003729]; single-stranded RNA binding [GO:0003727]; cell proliferation [GO:0008283] DEVELOPMENTAL STAGE: Expressed in joints of immature siliques, decreases with maturation and not detected in the joints of mature siliques. {ECO:0000269|PubMed:10805591}. TISSUE SPECIFICITY: Highly expressed in inflorescences and roots. Detected in leaves and seedlings, but not in stems. Expressed in vegetative shoot apex and root meristem, but not in root cap. Detected in flower buds, junction of pedicels, joints of immature siliques and pistil. {ECO:0000269|PubMed:10805591}. locus:2037633; AT1G58470 RNA-binding protein Os03g0141300 protein (RNA recognition motif family protein, expressed),Os01g0766700 protein Q10RZ0,A0A0N7KDT5 Q10RZ0_ORYSJ,A0A0N7KDT5_ORYSJ Os03g0141300 LOC_Os03g04780 OSNPB_030141300,Os01g0766700 OSNPB_010766700 ENOG411E3DM MED22A,MED22B Q9SA42,Q8LCH5,A0A1P8ATZ6 MD22A_ARATH,MD22B_ARATH,A0A1P8ATZ6_ARATH Mediator of RNA polymerase II transcription subunit 22a,Mediator of RNA polymerase II transcription subunit 22b,Surfeit locus protein 5 subunit 22 of Mediator complex FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 16179,16564,19828 Mediator of RNA polymerase II transcription subunit 22a,Mediator of RNA polymerase II transcription subunit 22b,Surfeit locus protein 5 subunit 22 of Mediator complex mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription, DNA-templated [GO:0006351],mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104] locus:2032920;,locus:2205130; AT1G16430,AT1G07950 Mediator of RNA polymerase II transcription subunit Os01g0132700 protein (cDNA, clone: J065187N12, full insert sequence),Os08g0480500 protein (cDNA clone:J013129G19, full insert sequence) Q0JQY0,Q6Z240 Q0JQY0_ORYSJ,Q6Z240_ORYSJ Os01g0132700 Os01g0132700 OsJ_00255 OSNPB_010132700,Os08g0480500 OJ1113_A10.39 OsJ_27691 OSJNBb0092C08.9 OSNPB_080480500 ENOG411E3DN C7A10.390 O23188 O23188_ARATH Remorin family protein (Uncharacterized protein AT4g36970) 46801 Remorin family protein (Uncharacterized protein AT4g36970) chloroplast [GO:0009507]; plasma membrane [GO:0005886] locus:2115085; AT4G36970 Remorin C-terminal region NA NA NA NA NA NA NA ENOG411E3DP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0673300 protein (cDNA, clone: J065159L13, full insert sequence),Os01g0660700 protein,Os08g0336000 protein Q8W0I3,Q0JKP0,Q6Z992 Q8W0I3_ORYSJ,Q0JKP0_ORYSJ,Q6Z992_ORYSJ Os01g0673300 OSNPB_010673300 P0007F06.29 P0485G01.19,Os01g0660700 Os01g0660700 OsJ_02897 OSNPB_010660700,Os08g0336000 OsJ_26942 OSNPB_080336000 P0683E12.1 P0689D06.5 ENOG411E3DQ F26K9_250 Q9LZI3 Q9LZI3_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein (Putative pectinesterase) (Uncharacterized protein At3g62820) (Uncharacterized protein F26K9_250) 21459 Plant invertase/pectin methylesterase inhibitor superfamily protein (Putative pectinesterase) (Uncharacterized protein At3g62820) (Uncharacterized protein F26K9_250) enzyme inhibitor activity [GO:0004857] locus:2081660; AT3G62820 PMEI NA NA NA NA NA NA NA ENOG411E3DS MJC20.6 Q9FHY7,A0A1P8BH69 Q9FHY7_ARATH,A0A1P8BH69_ARATH At5g41960 (Zinc finger matrin-type protein),Zinc finger matrin-type protein 24070,18344 At5g41960 (Zinc finger matrin-type protein),Zinc finger matrin-type protein integral component of membrane [GO:0016021] locus:2165745; AT5G41960 NA OSJNBa0013K16.11 protein (Os04g0585600 protein) (cDNA clone:001-206-H09, full insert sequence) Q7XP56 Q7XP56_ORYSJ Os04g0585600 Os04g0585600 OsJ_15933 OSJNBa0013K16.11 OSNPB_040585600 ENOG411E3DT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os01g0719000 protein (cDNA clone:001-030-F10, full insert sequence) (cDNA clone:J033080J22, full insert sequence) Q5JL98 Q5JL98_ORYSJ Os01g0719000 Os01g0719000 OsJ_03269 OSNPB_010719000 P0480C01.26 ENOG411E1A9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIB zinc-binding Os03g0193600 protein (Putative transcription initiation factor IIB) (Transcription factor TFIIB repeat family protein),Os05g0548200 protein (Putative transcription initiation factor TFIIB) (cDNA clone:002-129-G01, full insert sequence),Os07g0504500 protein (Putative Transcription initiation factor IIB),Os07g0504200 protein Q8H7W1,Q5KQD1,Q6Z467,A0A0P0X6J4 Q8H7W1_ORYSJ,Q5KQD1_ORYSJ,Q6Z467_ORYSJ,A0A0P0X6J4_ORYSJ Os03g0193600 LOC_Os03g09820 OSJNBa0064E16.16 OSNPB_030193600,Os05g0548200 OSJNOa0014E02.5 OSNPB_050548200,Os07g0504500 OsJ_24371 OSNPB_070504500 P0430F03.40,Os07g0504200 OSNPB_070504200 ENOG411E1A8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAF domain CBL-interacting protein kinase 22 (EC 2.7.11.1) (OsCIPK22),Os05g0333100 protein Q5KQF5,A0A0P0WKX3 CIPKM_ORYSJ,A0A0P0WKX3_ORYSJ CIPK22 Os05g0334750 Os05g0334800 LOC_Os05g26940 OSJNBa0049D13.5,Os05g0333100 OSNPB_050333100 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411E1A5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os10g0548000 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (Putative WW-domain oxidoreductase) (cDNA clone:J013156B05, full insert sequence),Os10g0547900 protein Q94LU0,A0A0P0XXH2 Q94LU0_ORYSJ,A0A0P0XXH2_ORYSJ OSJNBa0082M15.7 LOC_Os10g40030 Os10g0548000 OSNPB_100548000,Os10g0547900 OSNPB_100547900 ENOG411E1A4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:C4dic_mal_tran NA NA NA NA NA NA NA ENOG411E1A7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP transcription factor Os09g0410500 protein A0A0N7KQS6 A0A0N7KQS6_ORYSJ Os09g0410500 OSNPB_090410500 ENOG411E1A6 PIF5,PIF4 Q84LH8,Q8W2F3,F4IQ51,A0A1P8AX62,A0A1P8AX01,A0A1P8AX08 PIF5_ARATH,PIF4_ARATH,F4IQ51_ARATH,A0A1P8AX62_ARATH,A0A1P8AX01_ARATH,A0A1P8AX08_ARATH Transcription factor PIF5 (Basic helix-loop-helix protein 65) (AtbHLH65) (bHLH 65) (Phytochrome interacting factor-like 6) (Phytochrome-interacting factor 5) (Transcription factor EN 103) (bHLH transcription factor bHLH065),Transcription factor PIF4 (Basic helix-loop-helix protein 9) (AtbHLH9) (bHLH 9) (Phytochrome-interacting factor 4) (Short under red-light 2) (Transcription factor EN 102) (bHLH transcription factor bHLH009),Phytochrome interacting factor 4 Short hypocotyl and large cotyledons under red light-P. Quail-2007,Sensitive to continuous red light-P. Quail-2002 FUNCTION: Transcription factor acting negatively in the phytochrome B signaling pathway to promote the shade-avoidance response. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. Promotes ethylene activity in the dark. May regulate the expression of a subset of genes by binding to the G-box motif. Might be involved in the integration of light-signals to control both circadian and photomorphogenic processes. Activated by CRY1 and CRY2 in response to low blue light (LBL) by direct binding at chromatin on E-box variant 5'-CA[CT]GTG-3' to stimulate specific gene expression to adapt global physiology (e.g. hypocotyl elongation in low blue light) (PubMed:26724867). {ECO:0000269|PubMed:12826627, ECO:0000269|PubMed:15356333, ECO:0000269|PubMed:15486100, ECO:0000269|PubMed:17589502, ECO:0000269|PubMed:18047474, ECO:0000269|PubMed:18065691, ECO:0000269|PubMed:26724867}.,FUNCTION: Transcription factor acting negatively in the phytochrome B signaling pathway. May regulate the expression of a subset of genes involved in cell expansion by binding to the G-box motif (By similarity). Activated by CRY1 and CRY2 in response to low blue light (LBL) by direct binding at chromatin on E-box variant 5'-CA[CT]GTG-3' to stimulate specific gene expression to adapt global physiology (e.g. hypocotyl elongation in low blue light) (PubMed:26724867). {ECO:0000250|UniProtKB:Q84LH8, ECO:0000269|PubMed:26724867}. 49302,48363,48104,45647,49192,53283 Transcription factor PIF5 (Basic helix-loop-helix protein 65) (AtbHLH65) (bHLH 65) (Phytochrome interacting factor-like 6) (Phytochrome-interacting factor 5) (Transcription factor EN 103) (bHLH transcription factor bHLH065),Transcription factor PIF4 (Basic helix-loop-helix protein 9) (AtbHLH9) (bHLH 9) (Phytochrome-interacting factor 4) (Short under red-light 2) (Transcription factor EN 102) (bHLH transcription factor bHLH009),Phytochrome interacting factor 4 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene biosynthetic process [GO:0009693]; red, far-red light phototransduction [GO:0009585]; regulation of auxin biosynthetic process [GO:0010600]; regulation of auxin mediated signaling pathway [GO:0010928]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; de-etiolation [GO:0009704]; red light signaling pathway [GO:0010161]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; regulation of auxin biosynthetic process [GO:0010600]; regulation of auxin mediated signaling pathway [GO:0010928]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; transcription, DNA-templated [GO:0006351],protein dimerization activity [GO:0046983] DEVELOPMENTAL STAGE: Circadian-controlled expression. {ECO:0000269|PubMed:15356333}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2077680;,locus:2053733; AT3G59060,AT2G43010 transcription factor Helix-loop-helix DNA-binding domain containing protein, expressed (Os03g0782500 protein) (cDNA clone:001-200-E02, full insert sequence),Expressed protein (Os03g0639300 protein),Os08g0361600 protein Q10CH5,Q6AUE8,Q84UN8 Q10CH5_ORYSJ,Q6AUE8_ORYSJ,Q84UN8_ORYSJ Os03g0782500 LOC_Os03g56950 Os03g0782500 OSNPB_030782500,OSJNBb0029I19.4 Os03g0639300 OSNPB_030639300,B1027A11.119 Os08g0361600 OJ1014_E02.46 OsJ_27053 OSNPB_080361600 ENOG411E1A2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os05g0236600 protein,Os04g0399600 protein A0A0P0WJJ9,A0A0P0W9M1 A0A0P0WJJ9_ORYSJ,A0A0P0W9M1_ORYSJ Os05g0236600 OSNPB_050236600,Os04g0399600 OSNPB_040399600 ENOG411E1AM OFP2 O04351 OFP2_ARATH Transcription repressor OFP2 (Ovate family protein 2) (AtOFP2) FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP2 show kidney-shaped cotyledons, round and curled leaves, small rosette size, late flowering, reduced fertilization and round seeds. {ECO:0000305|PubMed:21886836}. 36788 Transcription repressor OFP2 (Ovate family protein 2) (AtOFP2) nucleus [GO:0005634]; DNA binding [GO:0003677]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2064382; AT2G30400 ovate family protein 2 NA NA NA NA NA NA NA ENOG411E1AN Q940F4 Q940F4_ARATH AT4G15010 protein (At4g15610) (Mitochondrial substrate carrier family protein) (Uncharacterized protein AT4g15010) 40989 AT4G15010 protein (At4g15610) (Mitochondrial substrate carrier family protein) (Uncharacterized protein AT4g15010) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839] locus:2129595; AT4G15010 mitochondrial substrate carrier family protein Os04g0527500 protein (Fragment) Q0JBK5 Q0JBK5_ORYSJ Os04g0527500 Os04g0527500 OSNPB_040527500 ENOG411E1AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lipid catabolic process Lipase-like (Os01g0650200 protein) (cDNA clone:001-125-E02, full insert sequence),Os01g0650000 protein (Fragment),Lipase-like (Os01g0649900 protein),Os01g0649400 protein (Fragment),Os01g0650100 protein (Fragment),Os01g0650200 protein (Fragment),Os01g0650200 protein,Os01g0649200 protein (Fragment) Q5VP20,Q0JKU2,Q8RZ61,A0A0P0V5Y6,A0A0P0V5W7,A0A0P0V5Y2,A0A0P0V5X3,A0A0P0V5W8,A0A0P0V5Y5 Q5VP20_ORYSJ,Q0JKU2_ORYSJ,Q8RZ61_ORYSJ,A0A0P0V5Y6_ORYSJ,A0A0P0V5W7_ORYSJ,A0A0P0V5Y2_ORYSJ,A0A0P0V5X3_ORYSJ,A0A0P0V5W8_ORYSJ,A0A0P0V5Y5_ORYSJ OJ1159_D09.16-1 Os01g0650200 OSNPB_010650200,Os01g0650000 Os01g0650000 OSNPB_010650000,Os01g0649900 Os01g0649900 OJ1159_D09.6 OsJ_02826 OSNPB_010649900,Os01g0649400 OSNPB_010649400,Os01g0650100 OSNPB_010650100,Os01g0650200 OSNPB_010650200,Os01g0650000 OSNPB_010650000,Os01g0649200 OSNPB_010649200 ENOG411E1AH CYCU2-1,CYCU2-2 Q9SHD3,Q9M205 CCU21_ARATH,CCU22_ARATH Cyclin-U2-1 (CycU2;1) (Cyclin-P3.1) (CycP3;1),Cyclin-U2-2 (CycU2;2) (Cyclin-P3.2) (CycP3;2) 25819,26462 Cyclin-U2-1 (CycU2;1) (Cyclin-P3.1) (CycP3;1),Cyclin-U2-2 (CycU2;2) (Cyclin-P3.2) (CycP3;2) protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in the shoot apex, leaf primordia and young leaves. {ECO:0000269|PubMed:15197472}.,TISSUE SPECIFICITY: Expressed in roots and stems. Expressed in the shoot apex, leaf primordia and young leaves. {ECO:0000269|PubMed:15197472}. locus:2055552;,locus:2103391; AT2G45080,AT3G60550 regulation of cyclin-dependent protein serine/threonine kinase activity Cyclin-P2-1 (CycP2;1) Q7FAT5 CCP21_ORYSJ CYCP2-1 Os04g0552300 LOC_Os04g46660 OsJ_015051 OSJNBa0010H02.9 ENOG411E1AK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACTIN Actin-7,Os01g0866100 protein P0C540,A0A0P0VAT4 ACT7_ORYSJ,A0A0P0VAT4_ORYSJ ACT7 AC7 RAC7 Os01g0866100 LOC_Os01g64630 P0505D12.32-2,Os01g0866100 OSNPB_010866100 FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.; FUNCTION: Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. MISCELLANEOUS: There are at least eight actin genes in rice. ENOG411E1AJ Q9C8K7 FBK21_ARATH F-box/kelch-repeat protein At1g51550 53167 F-box/kelch-repeat protein At1g51550 locus:2033934; AT1G51550 F-box kelch-repeat protein Os08g0230300 protein (Putative F-box protein) Q6Z1R8 Q6Z1R8_ORYSJ Os08g0230300 OSJNBa0038P10.33 OSNPB_080230300 P0461A06.2 ENOG411E1AE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: - C2H2 zinc finger protein expressed Os06g0683000 protein (Zinc finger (C2H2 type) protein-like) (cDNA clone:001-125-A08, full insert sequence) (cDNA clone:002-186-A10, full insert sequence),Os06g0683000 protein (Fragment) Q653W1,A0A0P0X0C7 Q653W1_ORYSJ,A0A0P0X0C7_ORYSJ Os06g0683000 Os06g0683000 OSNPB_060683000 P0009H10.4 P0547F09.37,Os06g0683000 OSNPB_060683000 ENOG411E1AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3675) Os01g0686700 protein A0A0P0V6Q7 A0A0P0V6Q7_ORYSJ Os01g0686700 OSNPB_010686700 ENOG411E1AG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alpha-L-arabinofuranosidase C-terminus Os12g0129300 protein,Alpha-L-arabinofuranosidase C-terminus family protein, expressed (Os11g0132600 protein),Os12g0128800 protein (Fragment),Os12g0129350 protein (Fragment),Os12g0128800 protein,Os11g0132600 protein (Fragment) Q0IQD1,Q2RAZ2,Q0IQD3,A0A0P0Y6M0,A0A0P0Y6J4,A0A0P0XZ19 Q0IQD1_ORYSJ,Q2RAZ2_ORYSJ,Q0IQD3_ORYSJ,A0A0P0Y6M0_ORYSJ,A0A0P0Y6J4_ORYSJ,A0A0P0XZ19_ORYSJ Os12g0129300 Os12g0129300 OsJ_35103 OSNPB_120129300,LOC_Os11g03780 Os11g0132600 OSNPB_110132600,Os12g0128800 Os12g0128800 OSNPB_120128800,Os12g0129350 OSNPB_120129350,Os12g0128800 OSNPB_120128800,Os11g0132600 OSNPB_110132600 ENOG411E1AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0819700 protein (Fragment) Q0DMA9 Q0DMA9_ORYSJ Os03g0819700 Os03g0819700 OSNPB_030819700 ENOG411E1AB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os03g0345700 protein (Fragment) A0A0N7KH91 A0A0N7KH91_ORYSJ Os03g0345700 OSNPB_030345700 ENOG411E1AY MPF21.15 Q8RWK2,A0A1P8BGW1,A0A1P8BGV9,A0A1P8BGW2,A0A1P8BGV6,A0A1P8BGW3,A0A1P8BGV7,A0A1P8BH10,F4K7J4 Q8RWK2_ARATH,A0A1P8BGW1_ARATH,A0A1P8BGV9_ARATH,A0A1P8BGW2_ARATH,A0A1P8BGV6_ARATH,A0A1P8BGW3_ARATH,A0A1P8BGV7_ARATH,A0A1P8BH10_ARATH,F4K7J4_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Ribitol dehydrogenase-like),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT5G50130-MONOMER; 37284,28663,32544,28576,35928,33987,33900,32631,35841 NAD(P)-binding Rossmann-fold superfamily protein (Ribitol dehydrogenase-like),NAD(P)-binding Rossmann-fold superfamily protein oxidoreductase activity [GO:0016491] locus:2170071; AT5G50130 Dehydrogenase NA NA NA NA NA NA NA ENOG411E1AX MTERF1 Q84X53 MTEF1_ARATH Transcription termination factor MTEF1, chloroplastic (Mitochondrial transcription termination factor 1) (Protein EMBRYO DEFECTIVE 93) (Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10) DISRUPTION PHENOTYPE: Albino seed and embryo defective when homozygous (PubMed:12324593, PubMed:19563435). Developmental arrest of the embryo from globular to mature stages (PubMed:12324593). {ECO:0000269|PubMed:12324593, ECO:0000269|PubMed:19563435}. Null: Embryo defective; Transition; Knockdown: Pale green cotyledons-K. Apel-2009 FUNCTION: Transcription termination factor required for plastid-specific rRNA accumulation and protein synthesis in plastids (PubMed:19563435). Essential for embryogenesis (PubMed:12324593, PubMed:19563435). {ECO:0000269|PubMed:12324593, ECO:0000269|PubMed:19563435}. 32391 Transcription termination factor MTEF1, chloroplastic (Mitochondrial transcription termination factor 1) (Protein EMBRYO DEFECTIVE 93) (Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; DNA-templated transcription, termination [GO:0006353]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2056745; AT2G03050 transcription termination Mitochondrial transcription termination factor-like protein (Os02g0577501 protein) Q69JV5 Q69JV5_ORYSJ Os02g0577501 Os02g0577501 B1342F01.19 OsJ_07251 OSNPB_020577501 ENOG411E1AZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0188266 protein C7J529 C7J529_ORYSJ Os07g0188266 Os07g0188266 OSNPB_070188266 ENOG411E1AU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0005 Expressed protein (Os03g0795600 protein) Q6F386 Q6F386_ORYSJ OSJNBb0021G19.11 LOC_Os03g58140 Os03g0795600 OsJ_12943 OSNPB_030795600 ENOG411E1AT NMNAT F4K687,A0A1P8B9B6,F4K688 NMNAT_ARATH,A0A1P8B9B6_ARATH,F4K688_ARATH Nicotinamide/nicotinic acid mononucleotide adenylyltransferase (NMN/NaMN adenylyltransferase) (EC 2.7.7.1) (EC 2.7.7.18) (Nicotinamide mononucleotide adenylyltransferase) (NMN adenylyltransferase) (Nicotinate-nucleotide adenylyltransferase) (NaMN adenylyltransferase),Nicotinate/nicotinamide mononucleotide adenyltransferase atnmnat/+ plants frequently produced shorter siliques with lower seed set Male gametophyte defective; Rare embryo defective-H. Uchimiya-2007 FUNCTION: Catalyzes the formation of NAD(+) from nicotinamide mononucleotide (NMN) and ATP. Can also use the deamidated form; nicotinic acid mononucleotide (NaMN) as substrate. {ECO:0000250|UniProtKB:Q9HAN9}. PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; deamido-NAD(+) from nicotinate D-ribonucleotide: step 1/1. {ECO:0000250|UniProtKB:Q9HAN9}.; PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from nicotinamide D-ribonucleotide: step 1/1. {ECO:0000250|UniProtKB:Q9HAN9}. R-ATH-196807; 2.7.7.1; 2.7.7.1; 2.7.7.18 26923,20994,29884 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase (NMN/NaMN adenylyltransferase) (EC 2.7.7.1) (EC 2.7.7.18) (Nicotinamide mononucleotide adenylyltransferase) (NMN adenylyltransferase) (Nicotinate-nucleotide adenylyltransferase) (NaMN adenylyltransferase),Nicotinate/nicotinamide mononucleotide adenyltransferase nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; nicotinamide-nucleotide adenylyltransferase activity [GO:0000309]; nicotinate-nucleotide adenylyltransferase activity [GO:0004515]; 'de novo' NAD biosynthetic process from aspartate [GO:0034628],transferase activity [GO:0016740]; biosynthetic process [GO:0009058],nicotinamide-nucleotide adenylyltransferase activity [GO:0000309]; nicotinate-nucleotide adenylyltransferase activity [GO:0004515]; NAD biosynthetic process [GO:0009435]; pollen development [GO:0009555]; pollen tube growth [GO:0009860] locus:2162187; AT5G55810 Nicotinamide mononucleotide adenylyltransferase Nicotinamide/nicotinic acid mononucleotide adenylyltransferase (NMN/NaMN adenylyltransferase) (EC 2.7.7.1) (EC 2.7.7.18) (Nicotinamide mononucleotide adenylyltransferase) (NMN adenylyltransferase) (Nicotinate-nucleotide adenylyltransferase) (NaMN adenylyltransferase),Os02g0814900 protein,Os09g0347900 protein (Fragment) Q0DWH7,A0A0N7KGB5,A0A0P0XLS3 NMNAT_ORYSJ,A0A0N7KGB5_ORYSJ,A0A0P0XLS3_ORYSJ Os02g0814900 LOC_Os02g56980 OJ1293_E04.25 OsJ_08854,Os02g0814900 OSNPB_020814900,Os09g0347900 OSNPB_090347900 FUNCTION: Catalyzes the formation of NAD(+) from nicotinamide mononucleotide (NMN) and ATP. Can also use the deamidated form; nicotinic acid mononucleotide (NaMN) as substrate. {ECO:0000250|UniProtKB:Q9HAN9}. ENOG411E1AW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase D-mannose binding lectin family protein (Os12g0130300 protein),D-mannose binding lectin family protein, expressed (Os11g0133300 protein) (cDNA clone:J033099B16, full insert sequence),Os12g0130800 protein,Os11g0133500 protein,Os12g0130500 protein (Fragment),Os12g0130600 protein,Os12g0130701 protein,Os11g0133100 protein Q2QY70,Q2RAY4,A0A0P0Y6H8,A0A0P0XYU6,A0A0P0Y700,A0A0P0Y6M8,A0A0N7KTI8,A0A0P0XYD6 Q2QY70_ORYSJ,Q2RAY4_ORYSJ,A0A0P0Y6H8_ORYSJ,A0A0P0XYU6_ORYSJ,A0A0P0Y700_ORYSJ,A0A0P0Y6M8_ORYSJ,A0A0N7KTI8_ORYSJ,A0A0P0XYD6_ORYSJ Os12g0130300 LOC_Os12g03650 Os12g0130300 OSNPB_120130300,Os11g0133300 LOC_Os11g03860 OsJ_32842 OSNPB_110133300,Os12g0130800 OSNPB_120130800,Os11g0133500 OSNPB_110133500,Os12g0130500 OSNPB_120130500,Os12g0130600 OSNPB_120130600,Os12g0130701 OSNPB_120130701,Os11g0133100 OSNPB_110133100 ENOG411E1AR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb factor (Myb-related protein Myb4, putative, expressed) (Os10g0478300 protein) (cDNA clone:002-153-H11, full insert sequence) Q7XDC7 Q7XDC7_ORYSJ Os10g0478300 LOC_Os10g33810 Os10g0478300 OSJNBa0055P24.4 OSNPB_100478300 ENOG411DS72 POT11,POT10,KUP11 O64769,Q9SA05,F4IIZ3 POT11_ARATH,POT10_ARATH,F4IIZ3_ARATH Potassium transporter 11 (AtPOT11),Potassium transporter 10 (AtPOT10),Potassium transporter FUNCTION: Probable potassium transporter.,FUNCTION: Putative potassium transporter.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. 88966,89220,89053 Potassium transporter 11 (AtPOT11),Potassium transporter 10 (AtPOT10),Potassium transporter integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079]; pollen development [GO:0009555] locus:2029589;,locus:2044717; AT2G35060,AT1G31120 Potassium transporter Probable potassium transporter 11 (OsHAK11),Putative potassium transporter 12 (OsHAK12),Potassium transporter 18 (OsHAK18),Os08g0206400 protein Q7XLC6,Q8VXB1,Q653B6,A0A0P0XDG6 HAK11_ORYSJ,HAK12_ORYSJ,HAK18_ORYSJ,A0A0P0XDG6_ORYSJ HAK11 Os04g0613900 LOC_Os04g52390 OSJNBa0070C17.23,HAK12 Os08g0206400 LOC_Os08g10550 OsJ_26409,HAK18 Os09g0563200 LOC_Os09g38960 OsJ_30348 P0635G10.34,Os08g0206400 OSNPB_080206400 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DS73 Q8GXA2,F4IYI9,A0A1I9LPE1,A0A1I9LPE3,A0A178VHR6,A0A1I9LPE5,F4IYI8,A0A1I9LPD9,A0A1I9LPE0 Q8GXA2_ARATH,F4IYI9_ARATH,A0A1I9LPE1_ARATH,A0A1I9LPE3_ARATH,A0A178VHR6_ARATH,A0A1I9LPE5_ARATH,F4IYI8_ARATH,A0A1I9LPD9_ARATH,A0A1I9LPE0_ARATH D-alanine-D-alanine ligase family (Uncharacterized protein At3g08840) (Uncharacterized protein At3g08840/T16O11_23),D-alanine-D-alanine ligase family 56809,92953,97062,104422,48180,93692,102896,48819,93701 D-alanine-D-alanine ligase family (Uncharacterized protein At3g08840) (Uncharacterized protein At3g08840/T16O11_23),D-alanine-D-alanine ligase family ATP binding [GO:0005524]; D-alanine-D-alanine ligase activity [GO:0008716]; metal ion binding [GO:0046872],chloroplast [GO:0009507]; ATP binding [GO:0005524]; D-alanine-D-alanine ligase activity [GO:0008716]; metal ion binding [GO:0046872] locus:2097648; AT3G08840 D-alanine--D-alanine ligase Os07g0691200 protein,Os07g0691200 protein (Fragment) Q7XI67,A0A0P0XAE2,A0A0P0XAL7,A0A0P0XAN9 Q7XI67_ORYSJ,A0A0P0XAE2_ORYSJ,A0A0P0XAL7_ORYSJ,A0A0P0XAN9_ORYSJ P0034A04.101-1 P0597G07.131-1 Os07g0691200 OsJ_25672 OSNPB_070691200,Os07g0691200 OSNPB_070691200 ENOG411E3D0 CUTA P93009 CUTA_ARATH Protein CutA, chloroplastic (Copper-binding protein CutA) (AtCUTA) FUNCTION: Involved in metal homeostasis. Specifically binds Cu(2+). The truncated isoform has less specificity in metal binding. {ECO:0000269|PubMed:12795705}. MISCELLANEOUS: Knockout lines indicate that CUTA is not essential for copper tolerance or accumulation. 19771 Protein CutA, chloroplastic (Copper-binding protein CutA) (AtCUTA) chloroplast [GO:0009507]; chloroplast intermembrane space [GO:0031972]; copper ion binding [GO:0005507]; response to metal ion [GO:0010038] TISSUE SPECIFICITY: Expressed in flowers, leaves, stems and roots. {ECO:0000269|PubMed:12795705}. locus:2057651; AT2G33740 protein CutA 1 chloroplastic-like Protein CutA 1, chloroplastic (OsCutA1),Os03g0186950 protein (Fragment),Os10g0378300 protein Q109R6,A0A0P0VU22,A0A0P0XU44 CUTA1_ORYSJ,A0A0P0VU22_ORYSJ,A0A0P0XU44_ORYSJ CUTA1 Os10g0378300 LOC_Os10g23204 OsJ_31315,Os03g0186950 OSNPB_030186950,Os10g0378300 OSNPB_100378300 ENOG411E3D1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function DUF221 NA NA NA NA NA NA NA ENOG411E3D2 Q56XP9,A0A1P8B752,F4JS76,A0A1P8B764,A0A1P8B748 ERFL1_ARATH,A0A1P8B752_ARATH,F4JS76_ARATH,A0A1P8B764_ARATH,A0A1P8B748_ARATH Ethylene-responsive transcription factor-like protein At4g13040,Integrase-type DNA-binding superfamily protein FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 26400,23055,28659,26045,20058 Ethylene-responsive transcription factor-like protein At4g13040,Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; positive regulation of defense response to bacterium [GO:1900426]; regulation of salicylic acid metabolic process [GO:0010337]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] locus:2123246; AT4G13040 AP2 domain containing protein expressed Os02g0499000 protein (cDNA clone:J013098A10, full insert sequence) B7ED44 B7ED44_ORYSJ Os02g0499000 OSNPB_020499000 ENOG411E3D5 ZAT3,ZAT2 O65499,Q9SIJ0 ZAT3_ARATH,ZAT2_ARATH Zinc finger protein ZAT3 (Protein DUO1-ACTIVATED ZINC FINGER 2),Zinc finger protein ZAT2 (Protein DUO1-ACTIVATED ZINC FINGER 1) FUNCTION: Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. 31362,29556 Zinc finger protein ZAT3 (Protein DUO1-ACTIVATED ZINC FINGER 2),Zinc finger protein ZAT2 (Protein DUO1-ACTIVATED ZINC FINGER 1) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen sperm cell differentiation [GO:0048235]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}. TISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}. locus:2122118;,locus:2059672; AT4G35280,AT2G17180 zinc finger Os02g0293900 protein (Zinc finger (C2H2 type)-like) Q6KAB8 Q6KAB8_ORYSJ OJ1057_D08.30 Os02g0293900 OSNPB_020293900 ENOG411E3D6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein A0A0P0WG65 A0A0P0WG65_ORYSJ Os04g0666800 OSNPB_040666800 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411DS74 Q9FZ88 Q9FZ88_ARATH F3H9.20 protein (Integral membrane family protein) (Uncharacterized protein At1g28140) (Uncharacterized protein At1g28140; F3H9.20) 30279 F3H9.20 protein (Integral membrane family protein) (Uncharacterized protein At1g28140) (Uncharacterized protein At1g28140; F3H9.20) chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2010499; AT1G28140 Uncharacterized integral membrane protein (DUF2301) Expressed protein (Os03g0850600 protein) (cDNA clone:J013095N12, full insert sequence) Q851Z3 Q851Z3_ORYSJ LOC_Os03g63360 Os03g0850600 OSJNBa0015N08.8 OSNPB_030850600 ENOG411DYPI Q9M0F0,A0A1P8B4T8 Q9M0F0_ARATH,A0A1P8B4T8_ARATH DUF1005 family protein (DUF1005) (Uncharacterized protein AT4g29310),DUF1005 family protein (DUF1005) 45656,35999 DUF1005 family protein (DUF1005) (Uncharacterized protein AT4g29310),DUF1005 family protein (DUF1005) plant-type cell wall [GO:0009505] locus:2118259; AT4G29310 stress-induced protein Os01g0740400 protein Q5JNK7 Q5JNK7_ORYSJ Os01g0740400 Os01g0740400 OSNPB_010740400 P0638D12.27 ENOG411DYPH CXE12,CXE7 Q9SMN0,Q9ZQ91 CXE12_ARATH,CXE7_ARATH Probable carboxylesterase 12 (AtCXE12) (EC 3.1.1.1),Probable carboxylesterase 7 (AtCXE7) (EC 3.1.1.1) Four-fold reduction in esterase activity toward 24-D-methyl and pNA in mutant compared to wild type. Resistant to 2,4-D-methyl-R. Edwards-2007 FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT3G48690-MONOMER;,ARA:AT2G03550-MONOMER; 3.1.1.1 35567,34750 Probable carboxylesterase 12 (AtCXE12) (EC 3.1.1.1),Probable carboxylesterase 7 (AtCXE7) (EC 3.1.1.1) cytoplasm [GO:0005737]; cytosol [GO:0005829]; carboxylic ester hydrolase activity [GO:0052689]; catabolic process [GO:0009056],cytosol [GO:0005829]; carboxylic ester hydrolase activity [GO:0052689]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2114450;,locus:2063751; AT3G48690,AT2G03550 Carboxylesterase Os09g0462200 protein (Fragment) A0A0P0XP65 A0A0P0XP65_ORYSJ Os09g0462200 OSNPB_090462200 ENOG411DYPK Q9LR03,Q93Z02 Q9LR03_ARATH,Q93Z02_ARATH F10A5.18 (Glyoxal oxidase-related protein),At1g19900/F6F9_4 (Glyoxal oxidase-related protein) 60780,61071 F10A5.18 (Glyoxal oxidase-related protein),At1g19900/F6F9_4 (Glyoxal oxidase-related protein) locus:2005664;,locus:2035408; AT1G75620,AT1G19900 glyoxal oxidase-related Glyoxal oxidase, putative, expressed (Os03g0258900 protein) (cDNA clone:J023112O15, full insert sequence) Q10NU0 Q10NU0_ORYSJ LOC_Os03g15320 Os03g0258900 OsJ_10202 OSNPB_030258900 ENOG411DYPJ CIPK8 Q9STV4,F4JQW5 CIPK8_ARATH,F4JQW5_ARATH CBL-interacting serine/threonine-protein kinase 8 (EC 2.7.11.1) (SNF1-related kinase 3.13) (SOS2-like protein kinase PKS11),Non-specific serine/threonine protein kinase (EC 2.7.11.1) Increased primary root length in the cipk8 mutants. Expression of AttDT BOR1 CHL1 and NRT2.1 NIA1 NIA2 and NiR was reduced in the mutant. FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 50428,47064 CBL-interacting serine/threonine-protein kinase 8 (EC 2.7.11.1) (SNF1-related kinase 3.13) (SOS2-like protein kinase PKS11),Non-specific serine/threonine protein kinase (EC 2.7.11.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; response to glucose [GO:0009749]; response to nitrate [GO:0010167]; root development [GO:0048364],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in leaves, stems, flowers, and siliques. {ECO:0000269|PubMed:12029080}. locus:2135962; AT4G24400 CBL-interacting serine threonine-protein kinase CBL-interacting protein kinase 8 (EC 2.7.11.1) (OsCIPK08) Q5JLD8 CIPK8_ORYSJ CIPK8 Os01g0536000 LOC_Os01g35184 OSJNBa0086A10.18 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DYPM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0222900 protein (Fragment),Os01g0222800 protein C7IX09,A0A0P0UZW1 C7IX09_ORYSJ,A0A0P0UZW1_ORYSJ Os01g0222900 Os01g0222900 OSNPB_010222900,Os01g0222800 OSNPB_010222800 ENOG411DYPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferroportin1 (FPN1) Solute carrier family 40 member 3, chloroplastic,Os05g0131500 protein B9FGV7,A0A0P0WHV2 S40A3_ORYSJ,A0A0P0WHV2_ORYSJ Os05g0131500 LOC_Os05g04120 OsJ_17006 P0033D06.13,Os05g0131500 OSNPB_050131500 FUNCTION: May be involved in iron transport and iron homeostasis. {ECO:0000250}. ENOG411DYPA MXI22.6 Q9FK37 Q9FK37_ARATH Uncharacterized protein At5g50350 64433 Uncharacterized protein At5g50350 response to oxidative stress [GO:0006979] locus:2177507; AT5G50350 NA Os06g0609800 protein (Fragment) A0A0P0WYJ8,A0A0P0WYJ7 A0A0P0WYJ8_ORYSJ,A0A0P0WYJ7_ORYSJ Os06g0609800 OSNPB_060609800 ENOG411DYPC BB Q8L649 BB_ARATH E3 ubiquitin ligase BIG BROTHER (EC 2.3.2.27) (Protein ENHANCER OF DA1-1) (RING-type E3 ubiquitin transferase BIG BROTHER) DISRUPTION PHENOTYPE: Enlarged floral organs (e.g. petals and sepals) and thick stems mainly due to altered numbers of normally sized cells. Enhanced da1-1 phenotype leading to increased seed and organ size. {ECO:0000269|PubMed:16461280, ECO:0000269|PubMed:18483219}. Larger petals and sepals thicker stems than wild type. Accumulate more biomass in the form of flowers than wild type plants.,Similar to bb-1/BB heterogygote plants. Slighly larger petals and sepals compared to wild type. Slightly increased flower biomass compared to wild type. Large floral organs-M. Lenhard-2006 FUNCTION: E3 ubiquitin-ligase that limits organ size, and possibly seed size, in a dose-dependent manner. Negatively regulates the duration of cell proliferation in leaves and petals independently of the major phytohormones (e.g. auxin, cytokinin, gibberellin, brassinosteroids, ethylene, abscisic acid, jasmonic acid), probably by targeting growth stimulators for degradation. {ECO:0000269|PubMed:16461280, ECO:0000269|PubMed:18483219}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 27983 E3 ubiquitin ligase BIG BROTHER (EC 2.3.2.27) (Protein ENHANCER OF DA1-1) (RING-type E3 ubiquitin transferase BIG BROTHER) metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; floral organ development [GO:0048437]; negative regulation of organ growth [GO:0046621]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567] DEVELOPMENTAL STAGE: Confined to proliferating cells. Mainly present in proliferating tissues (e.g. root, shoot and floral meristems, and young organs) and vasculature. During petal growth, gradually restricted to the distal part of the petal. Expressed in developing embryos. {ECO:0000269|PubMed:16461280}. TISSUE SPECIFICITY: Mostly expressed in inflorescence, and, to a lower extent, in seedlings, roots, stems, leaves and siliques. {ECO:0000269|PubMed:16461280}. locus:504955576; AT3G63530 E3 ubiquitin ligase BIG Os03g0173900 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:001-124-C08, full insert sequence) Q10R22 Q10R22_ORYSJ LOC_Os03g07790 Os03g0173900 OSNPB_030173900 ENOG411DYPB PCMP-E85 Q9SCT2,A0A1I9LRG4 PP277_ARATH,A0A1I9LRG4_ARATH Pentatricopeptide repeat-containing protein At3g50420,Pentatricopeptide repeat (PPR) superfamily protein 88517,85715 Pentatricopeptide repeat-containing protein At3g50420,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2098670; AT3G50420 Pentatricopeptide repeat-containing protein OSJNBb0004A17.12 protein (Os04g0672700 protein) Q0J946 Q0J946_ORYSJ Os04g0672700 OSJNBb0004A17.12 Os04g0672700 OsJ_16588 OSNPB_040672700 ENOG411DYPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ammonium transporter 3 member 1-like NA NA NA NA NA NA NA ENOG411DYPD AZG2 Q84MA8,A0A1P8BH09 AZG2_ARATH,A0A1P8BH09_ARATH Adenine/guanine permease AZG2 (AzgA-homolog protein) (Protein AZAGUANINE RESISTANT 2) (AtAzg2),Xanthine/uracil permease family protein DISRUPTION PHENOTYPE: Resistance to 8-azaadenine and 8-azaguanine, and, to a lower extent, to 5-fluorouracil, but not to other toxic nucleobase analogs. Deficience in the uptake of adenine and guanine. {ECO:0000269|PubMed:19121308}. Resistant to toxic purine analogues-G. Mourad-2009 FUNCTION: Transports natural purines (adenine and guanine) as well as purine analogs. Confers sensitivity to 8-azaadenine and 8-azaguanine (8-azg). {ECO:0000269|PubMed:19121308}. 56277,58066 Adenine/guanine permease AZG2 (AzgA-homolog protein) (Protein AZAGUANINE RESISTANT 2) (AtAzg2),Xanthine/uracil permease family protein integral component of membrane [GO:0016021]; purine nucleobase transmembrane transporter activity [GO:0005345]; transporter activity [GO:0005215]; adenine transport [GO:0015853]; guanine transport [GO:0015854]; purine nucleobase transport [GO:0006863],integral component of membrane [GO:0016021]; purine nucleobase transmembrane transporter activity [GO:0005345] locus:2157752; AT5G50300 adenine guanine permease At5g50300 (Os11g0427700 protein) (Xanthine/uracil/vitamin C permease family protein, putative, expressed) (cDNA clone:J023111J10, full insert sequence) Q53MW1 Q53MW1_ORYSJ Os11g0427700 LOC_Os11g24060 Os11g0427700 OsJ_33750 OSNPB_110427700 ENOG411DYPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DP DP protein (Os01g0678700 protein) (Putative DP protein) Q84VF4 Q84VF4_ORYSJ Os01g0678700 Os01g0678700 B1144G04.29 OSNPB_010678700 ENOG411DYPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q7XIW9 Q7XIW9_ORYSJ prx115 OJ1167_G06.130 Os07g0677600 OJ1409_C08.5 OsJ_25575 OSNPB_070677600 ENOG411DYPY EXO70A1,EXO70A3,EXO70A2 Q9LZD3,F4KG58,F4KG57,B3H609,F4KGM7 E70A1_ARATH,F4KG58_ARATH,F4KG57_ARATH,B3H609_ARATH,F4KGM7_ARATH Exocyst complex component EXO70A1 (AtExo70a1) (Exocyst subunit Exo70 family protein A1),Exocyst subunit exo70 family protein A3,Exocyst subunit exo70 family protein A2,Exocyst subunit exo70 family protein A1 DISRUPTION PHENOTYPE: Dwarf and sterile plants with decreased apical dominance. Branched inflorescences due to ectopic initiation of lateral inflorescences instead of flowers. Altered polar growth of root hairs and stigmatic papillae. Reduced cell expansion and aberrant xylem development. {ECO:0000269|PubMed:16942608, ECO:0000269|PubMed:20870962, ECO:0000269|PubMed:23709627}. Early seedling growth was not affected in mutants. Later mutant seedlings had shorter roots and retarded lateral rot intiation. The polar growth of root hairs and stigmatic papillae is disturbed. Organs are generally smaller plants show a loss of apical dominance and indeterminate growth where instead of floral meristems new lateral inflorescences are initiated in a reiterative manner. Mutant plants had dramatically reduced fertility. Increased branching; Reduced fertility-V. Zarsky-2006 FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. Participates in polarized pectin delivery required for the polarized development of the mucilage-producing volcano cells of the seed coat. Involved in the recycling and localization of auxin efflux carriers PIN1 and PIN2, and thus in polar auxin transport regulation. Functions in vesicle trafficking in tracheary elements to regulate patterned secondary cell wall thickening. {ECO:0000269|PubMed:16942608, ECO:0000269|PubMed:20618910, ECO:0000269|PubMed:20870962, ECO:0000269|PubMed:23163883, ECO:0000269|PubMed:23709627}. R-ATH-5620916; 72299,67572,72083,59235,75675 Exocyst complex component EXO70A1 (AtExo70a1) (Exocyst subunit Exo70 family protein A1),Exocyst subunit exo70 family protein A3,Exocyst subunit exo70 family protein A2,Exocyst subunit exo70 family protein A1 cell wall [GO:0005618]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular region [GO:0005576]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; exocytosis [GO:0006887],exocyst [GO:0000145]; exocytosis [GO:0006887],cell plate [GO:0009504]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; pollen tube tip [GO:0090404]; auxin transport [GO:0060918]; cell plate assembly [GO:0000919]; developmental process [GO:0032502]; exocytosis [GO:0006887]; lateral root morphogenesis [GO:0010102]; monopolar cell growth [GO:0042814]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; protein localization involved in auxin polar transport [GO:1901703]; root development [GO:0048364] locus:2156717;,locus:2156707;,locus:2142699; AT5G03540,AT5G52350,AT5G52340 exocyst complex component Exocyst subunit EXO70 family protein, putative, expressed (Os11g0157400 protein) (cDNA clone:J013069O21, full insert sequence),Os12g0159700 protein Q2RAC2,A0A0P0Y7C6 Q2RAC2_ORYSJ,A0A0P0Y7C6_ORYSJ Os11g0157400 LOC_Os11g05880 Os11g0157400 OsJ_33035 OSNPB_110157400,Os12g0159700 OSNPB_120159700 ENOG411DYPX MAPKKK21 Q6K1M3 Q6K1M3_ARATH Mitogen-activated protein kinase kinase kinase 21 (Uncharacterized protein At4g36950) 36639 Mitogen-activated protein kinase kinase kinase 21 (Uncharacterized protein At4g36950) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2114990; AT4G36950 Mitogen-activated protein kinase kinase kinase NA NA NA NA NA NA NA ENOG411DYPZ YUC4,YUC1 Q9LFM5,Q9SZY8,A0A1P8B730 YUC4_ARATH,YUC1_ARATH,A0A1P8B730_ARATH Probable indole-3-pyruvate monooxygenase YUCCA4 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA4),Probable indole-3-pyruvate monooxygenase YUCCA1 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA1),Flavin-binding monooxygenase family protein DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with the other members of the YUCCA family. {ECO:0000269|PubMed:16818609}.,DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with the other members of the YUCCA family. {ECO:0000269|PubMed:16818609, ECO:0000269|PubMed:21205174}. FUNCTION: Involved in auxin biosynthesis. Both isoforms are catalitically active. Involved during embryogenesis and seedling development. Required for the formation of floral organs and vascular tissues. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in shoots. {ECO:0000269|PubMed:16818609, ECO:0000269|PubMed:17704214, ECO:0000269|PubMed:22025721, ECO:0000269|PubMed:22233288}.,FUNCTION: Involved in auxin biosynthesis, but not in the tryptamine or the CYP79B2/B3 branches. Catalyzes in vitro the N-oxidation of tryptamine to form N-hydroxyl tryptamine. Involved during embryogenesis and seedling development. Required for the formation of floral organs and vascular tissues. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in shoots. {ECO:0000269|PubMed:11209081, ECO:0000269|PubMed:16818609, ECO:0000269|PubMed:17704214, ECO:0000269|PubMed:20974893, ECO:0000269|PubMed:21205174, ECO:0000269|PubMed:21358284, ECO:0000269|PubMed:22025721, ECO:0000269|PubMed:22025724, ECO:0000269|PubMed:22108406}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. 1.14.13.168; 1.14.13.168 45406,46018,46204 Probable indole-3-pyruvate monooxygenase YUCCA4 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA4),Probable indole-3-pyruvate monooxygenase YUCCA1 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA1),Flavin-binding monooxygenase family protein cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; nucleoplasm [GO:0005654]; indole-3-pyruvate monooxygenase activity [GO:0103075]; indolepyruvate decarboxylase activity [GO:0047434]; auxin biosynthetic process [GO:0009851]; cotyledon development [GO:0048825]; inflorescence development [GO:0010229]; phyllome development [GO:0048827]; positive regulation of flower development [GO:0009911],flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851]; cotyledon development [GO:0048825]; inflorescence development [GO:0010229]; phyllome development [GO:0048827]; positive regulation of flower development [GO:0009911],monooxygenase activity [GO:0004497] DEVELOPMENTAL STAGE: Expression relatively broad during early stages of embryogenesis and more restricted to apical region of the cotyledons in the mature embryo. {ECO:0000269|PubMed:17704214}.,DEVELOPMENTAL STAGE: Expression relatively broad during early stages of embryogenesis and more restricted to discrete groups of cells in mature embryos. Later, expression mainly restricted to the cotyledons and the apical meristem. {ECO:0000269|PubMed:17704214}. TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, buds and siliques. Detected in the apical gynoecium and in the developing ovules. {ECO:0000269|PubMed:16818609, ECO:0000269|PubMed:22233288}.,TISSUE SPECIFICITY: Expressed in the apical meristems and young floral primordia. Detected in the floral meristems and at the base of the floral organs. {ECO:0000269|PubMed:16818609}. locus:2147962;,locus:2131322; AT5G11320,AT4G32540 flavin-containing monooxygenase Flavin-containing monooxygenase (EC 1.-.-.-) Q5VRB9,A0A0P0V5U9 Q5VRB9_ORYSJ,A0A0P0V5U9_ORYSJ Os01g0645400 OSNPB_010645400 P0707D10.26,Os01g0645400 OSNPB_010645400 ENOG411DYPQ Q9LK01 Q9LK01_ARATH Alpha/beta-Hydrolases superfamily protein (At3g24420) (Hydrolase-like protein) (Uncharacterized protein At3g24420) 30023 Alpha/beta-Hydrolases superfamily protein (At3g24420) (Hydrolase-like protein) (Uncharacterized protein At3g24420) hydrolase activity [GO:0016787] locus:2087213; AT3G24420 hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411DYPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase Os03g0162800 protein,Os03g0162650 protein,Os07g0255600 protein Q0DUX1,A0A0P0VTE3,A0A0P0X4C2 Q0DUX1_ORYSJ,A0A0P0VTE3_ORYSJ,A0A0P0X4C2_ORYSJ Os03g0162800 OSNPB_030162800,Os03g0162650 OSNPB_030162650,Os07g0255600 OSNPB_070255600 ENOG411DYPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0159000 protein (cDNA clone:J023049H21, full insert sequence) B7EHP2 B7EHP2_ORYSJ Os01g0159000 OSNPB_010159000 ENOG411DYPR Q8VY62 Q8VY62_ARATH Putative methyltransferase family protein (Uncharacterized protein At4g14000) 31301 Putative methyltransferase family protein (Uncharacterized protein At4g14000) methyltransferase activity [GO:0008168] locus:2129286; AT4G14000 histidine protein methyltransferase 1 homolog Os09g0359900 protein (cDNA clone:001-127-F10, full insert sequence) Q6K562 Q6K562_ORYSJ Os09g0359900 Os09g0359900 OsJ_29057 OSNPB_090359900 P0711F01.28 ENOG411DYPU ABCG23 Q3E9B8,A0A1P8BFZ4 AB23G_ARATH,A0A1P8BFZ4_ARATH ABC transporter G family member 23 (ABC transporter ABCG.23) (AtABCG23) (Probable white-brown complex homolog protein 24) (AtWBC24),ABC-2 type transporter family protein R-ATH-1369062; 69934,71003 ABC transporter G family member 23 (ABC transporter ABCG.23) (AtABCG23) (Probable white-brown complex homolog protein 24) (AtWBC24),ABC-2 type transporter family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] locus:2150290; AT5G19410 ABC transporter G family member Os05g0384600 protein,'putative ABC transporter, PF00005 (Os05g0384600 protein) Q0DIJ5,Q6AV11 Q0DIJ5_ORYSJ,Q6AV11_ORYSJ Os05g0384600 Os05g0384600 OSNPB_050384600,Os05g0384600 OJ1354_D07.9 OsJ_18385 OSNPB_050384600 ENOG411DYPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os09g0435400 protein A0A0N7KQV1 A0A0N7KQV1_ORYSJ Os09g0435400 OSNPB_090435400 ENOG411DYPW VAB,FKD1 Q8W4K5,F4J0Y8 VAB_ARATH,F4J0Y8_ARATH VAN3-binding protein (Protein FORKED 1),FORKED 1 Cotyledons and leaves have open venation due to lack of distal junctions between secondary tertiary and quaternary veins. Mutant leaves also show reduced expression of DR5::GUS an auxin-responsive reporter gene.,Cotyledons and leaves have open venation due to lack of distal junctions between secondary tertiary and quaternary veins. fkd1-1 mutant leaves also show reduced expression of DR5::GUS an auxin-responsive reporter gene. Abnormal cotyledon vascular patterning; No other phenotypes detected-E. Schultz-2010 53335,36438 VAN3-binding protein (Protein FORKED 1),FORKED 1 auxin-activated signaling pathway [GO:0009734]; leaf vascular tissue pattern formation [GO:0010305]; phloem or xylem histogenesis [GO:0010087]; response to auxin [GO:0009733] locus:2077294; AT3G63300 Plant pleckstrin homology-like region NA NA NA NA NA NA NA ENOG411DYPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0633500 protein (Fragment) Q0DAS8 Q0DAS8_ORYSJ Os06g0633500 Os06g0633500 OSNPB_060633500 ENOG411DYP9 PCMP-E83 Q9MA85 PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340 73128 Pentatricopeptide repeat-containing protein At3g05340 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2096299; AT3G05340 Pentatricopeptide repeat-containing protein Os05g0147600 protein (Fragment) Q0DKR6 Q0DKR6_ORYSJ Os05g0147600 Os05g0147600 OSNPB_050147600 ENOG411DYP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENT domain Os04g0659400 protein (cDNA clone:J023042D01, full insert sequence) Q0J9D7 Q0J9D7_ORYSJ Os04g0659400 Os04g0659400 OSNPB_040659400 ENOG411DYP1 AOX3,AOX1D Q8LEE7,A0A1P8AP13 AOX3_ARATH,A0A1P8AP13_ARATH Ubiquinol oxidase 3, mitochondrial (EC 1.10.3.11) (Alternative oxidase 3),Ubiquinol oxidase (EC 1.10.3.11) FUNCTION: Catalyzes the cyanide-resistant oxidation of ubiquinol and the reduction of molecular oxygen to water, but does not translocate protons and consequently is not linked to oxidative phosphorylation. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures (By similarity). {ECO:0000250}. MISCELLANEOUS: Unable to fully compensate for the loss of AOX1A when electron flow via the cytochrome pathway is restricted. {ECO:0000305|PubMed:19825614}. 1.10.3.11 36202,35219 Ubiquinol oxidase 3, mitochondrial (EC 1.10.3.11) (Alternative oxidase 3),Ubiquinol oxidase (EC 1.10.3.11) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; alternative oxidase activity [GO:0009916]; metal ion binding [GO:0046872]; ubiquinol:oxygen oxidoreductase activity [GO:0102721],integral component of membrane [GO:0016021]; respiratory chain [GO:0070469]; alternative oxidase activity [GO:0009916]; metal ion binding [GO:0046872]; ubiquinol:oxygen oxidoreductase activity [GO:0102721] DEVELOPMENTAL STAGE: Expressed during early rosette development and during flowering. {ECO:0000269|PubMed:16859634}. TISSUE SPECIFICITY: Expressed in roots, seedlings, leaves, flowers and sepals. Highest expression in the senescent leaves. {ECO:0000269|PubMed:16859634}. locus:2028311; AT1G32350 Ubiquinol oxidase NA NA NA NA NA NA NA ENOG411DYP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant phosphoribosyltransferase C-terminal Os04g0472900 protein Q0JCF9 Q0JCF9_ORYSJ Os04g0472900 Os04g0472900 OSNPB_040472900 ENOG411DYP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beta-eliminating lyase Os02g0302200 protein (cDNA, clone: J100059G16, full insert sequence),Os02g0302450 protein B7FA99,A0A0P0VI20 B7FA99_ORYSJ,A0A0P0VI20_ORYSJ Os02g0302200 OSNPB_020302200,Os02g0302450 OSNPB_020302450 ENOG411DYP2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain transcription factor-like (Os08g0454000 protein) Q6ZAG1 Q6ZAG1_ORYSJ P0048G02.8 Os08g0454000 OSNPB_080454000 ENOG411DYP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0607900 protein (Receptor-like protein kinase 1-like) (cDNA, clone: J100082A19, full insert sequence),Os05g0588300 protein Q5ZBN0,Q6L5B4 Q5ZBN0_ORYSJ,Q6L5B4_ORYSJ Os01g0607900 OSJNBa0090K04.21 OSNPB_010607900 P0704D04.29,Os05g0588300 OJ1007_H05.16 OSNPB_050588300 ENOG411DYP4 CHX3,CHX4 Q9FFB8,Q9FYC1 CHX3_ARATH,CHX4_ARATH Cation/H(+) antiporter 3 (Protein CATION/H+ EXCHANGER 3) (AtCHX3),Cation/H(+) antiporter 4 (Protein CATION/H+ EXCHANGER 4) (AtCHX4) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 92453,92008 Cation/H(+) antiporter 3 (Protein CATION/H+ EXCHANGER 3) (AtCHX3),Cation/H(+) antiporter 4 (Protein CATION/H+ EXCHANGER 4) (AtCHX4) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] locus:2172631;,locus:2082142; AT5G22900,AT3G44900 Cation H( ) antiporter NA NA NA NA NA NA NA ENOG411DYP7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYP6 PYD3 Q8H183 BUP1_ARATH Beta-ureidopropionase (EC 3.5.1.6) (N-carbamoyl-beta-alanine amidohydrolase) (Protein PYRIMIDINE 3) DISRUPTION PHENOTYPE: No visible phenotype, but unable to grow on uracil as sole nitrogen source. {ECO:0000269|PubMed:19413687}. The pyd3 mutant has a wild-type appearance under normal growth conditions. Pyrimidine nucleotide and uridine levels are not changed in the mutant but uracil levels are increased. The mutant has about an 80% decrease in uracil catabolism. These mutants cannot grow normally when uracil is provided as a sole nitrogen source. Lethal with urea as sole source of nitrogen-R. Slocum-2009 FUNCTION: Converts N-carbamoyl-beta-aminoisobutyrate and N-carbamoyl-beta-alanine (3-ureidopropanoate) to, respectively, beta-aminoisobutyrate and beta-alanine, ammonia and carbon dioxide. Involved in the recycling of nitrogen from nucleobases to general nitrogen metabolism. {ECO:0000269|PubMed:11161056, ECO:0000269|PubMed:19413687}. PATHWAY: Amino-acid biosynthesis; beta-alanine biosynthesis. {ECO:0000305}. ARA:AT5G64370-MONOMER;MetaCyc:MONOMER-9543; R-ATH-73621; 3.5.1.6; 3.5.1.6 45553 Beta-ureidopropionase (EC 3.5.1.6) (N-carbamoyl-beta-alanine amidohydrolase) (Protein PYRIMIDINE 3) cytosol [GO:0005829]; beta-ureidopropionase activity [GO:0003837]; beta-alanine biosynthetic process [GO:0019483]; cellular response to nitrogen levels [GO:0043562]; uracil catabolic process [GO:0006212] DEVELOPMENTAL STAGE: Up-regulated between days 3 and 5 after germination and during senescence. {ECO:0000269|PubMed:19413687}. locus:2173348; AT5G64370 Beta-ureidopropionase Os07g0485100 protein (Putative beta-alanine synthases) (cDNA clone:001-011-E08, full insert sequence) Q8H530 Q8H530_ORYSJ OJ1753_E03.112 Os07g0485100 OsJ_24269 OSNPB_070485100 ENOG411EGR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGR7 Q9M0J1 Q9M0J1_ARATH At4g28160 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein AT4g28160) 11813 At4g28160 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein AT4g28160) locus:2123638; AT4G28160 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411EGR4 Q9FY67 Q9FY67_ARATH At5g09480 (Hydroxyproline-rich glycoprotein family protein) (PEE-rich protein) 15985 At5g09480 (Hydroxyproline-rich glycoprotein family protein) (PEE-rich protein) locus:2184842; AT5G09480 NA NA NA NA NA NA NA NA ENOG411EGR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RWP-RK domain NA NA NA NA NA NA NA ENOG411EGR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seed maturation protein NA NA NA NA NA NA NA ENOG411EGRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosome inactivating protein Os12g0173900 protein A0A0P0Y7D5 A0A0P0Y7D5_ORYSJ Os12g0173900 OSNPB_120173900 ENOG411EGRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EGRZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0614050 protein (Fragment) A0A0P0YCI8 A0A0P0YCI8_ORYSJ Os12g0614050 OSNPB_120614050 ENOG411EGRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411EGRY Q9SJ21 Q9SJ21_ARATH At2g21780 (Expressed protein) 12236 At2g21780 (Expressed protein) locus:2052459; AT2G21780 NA NA NA NA NA NA NA NA ENOG411EGRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRC SIM Q9LZ78 SIM_ARATH Cyclin-dependent protein kinase inhibitor SIM (Protein SIAMESE) DISRUPTION PHENOTYPE: Multicellular trichomes with nuclei showing reduced levels of endoreduplication. {ECO:0000269|PubMed:10952891, ECO:0000269|PubMed:11882294, ECO:0000269|PubMed:17098811, ECO:0000269|PubMed:17764505, ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:20194967, ECO:0000269|PubMed:21558384}. Frequent multicellular trichomes and clusters of adjacent trichomes. Multicellular trichomes-J. Larkin-2006 FUNCTION: Cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle (PubMed:10952891, PubMed:11882294, PubMed:17098811, PubMed:17764505, PubMed:19717615, PubMed:20194967). Inhibits the kinase activity of CYCD3-1/CDKA-1, CYCD2-1/CDKA-1 and CYCB1-1/CDKB1-1 complexes in a dose dependent manner (PubMed:26546445). Cooperates with SMR1 and SMR2 to promote endoreplication during leaf development (PubMed:26546445). Required for normal trichome endoreplicating cell cycles (PubMed:10952891, PubMed:11882294, PubMed:17098811, PubMed:17764505, PubMed:19717615, PubMed:20194967). Positive regulator of effector-triggered immunity (ETI) (PubMed:25455564). {ECO:0000269|PubMed:10952891, ECO:0000269|PubMed:11882294, ECO:0000269|PubMed:17098811, ECO:0000269|PubMed:17764505, ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:20194967, ECO:0000269|PubMed:25455564, ECO:0000269|PubMed:26546445}. MISCELLANEOUS: Plants over-expressing SIM are dwarf with serrated leaves containing enlarged cells with increased levels of nuclear DNA. {ECO:0000305|PubMed:17098811}. 14091 Cyclin-dependent protein kinase inhibitor SIM (Protein SIAMESE) nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; DNA endoreduplication [GO:0042023]; negative regulation of cell cycle [GO:0045786]; negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045736]; negative regulation of mitotic nuclear division [GO:0045839]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Expressed in the shoot apical meristem, leaf primordia and the elongation zone of the root. {ECO:0000269|PubMed:17098811, ECO:0000269|PubMed:24399300}. locus:2184422; AT5G04470 Inherit from euNOG: cyclin-dependent protein kinase inhibitor NA NA NA NA NA NA NA ENOG411EGRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os02g0688200 protein A0A0P0VN51 A0A0P0VN51_ORYSJ Os02g0688200 OSNPB_020688200 ENOG411EGRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Janus/Ocnus family (Ocnus) NA NA NA NA NA NA NA ENOG411EGRG Q700D7,A0A1P8B686 Q700D7_ARATH,A0A1P8B686_ARATH At4g12670 (Homeodomain-like superfamily protein) (MYB transcription factor),Homeodomain-like superfamily protein 56553,68759 At4g12670 (Homeodomain-like superfamily protein) (MYB transcription factor),Homeodomain-like superfamily protein nuclear telomere cap complex [GO:0000783]; plasmodesma [GO:0009506]; double-stranded telomeric DNA binding [GO:0003691]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; telomeric loop formation [GO:0031627],DNA binding [GO:0003677] locus:2135743; AT4G12670 SANT NA NA NA NA NA NA NA ENOG411EGRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:3_5_exonuc NA NA NA NA NA NA NA ENOG411EGRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRK Q84MD1,A0A1P8ARH5,A0A1P8AMZ2,F4I7I1 Q84MD1_ARATH,A0A1P8ARH5_ARATH,A0A1P8AMZ2_ARATH,F4I7I1_ARATH At1g17285 (Transmembrane protein),Transmembrane protein,Uncharacterized protein 10662,17675,16042,12678 At1g17285 (Transmembrane protein),Transmembrane protein,Uncharacterized protein integral component of membrane [GO:0016021] locus:1006230716;,locus:2195803; AT1G17285,AT1G17300 Inherit from KOG: alanine aminotransferase NA NA NA NA NA NA NA ENOG411EGRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cryptococcal mannosyltransferase 1 NA NA NA NA NA NA NA ENOG411EGRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os09g0322800 protein A0A0P0XKH7 A0A0P0XKH7_ORYSJ Os09g0322800 OSNPB_090322800 ENOG411ECE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Barwin family Os11g0591700 protein (Fragment) A0A0P0Y3V7 A0A0P0Y3V7_ORYSJ Os11g0591700 OSNPB_110591700 ENOG411ECES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA e3 binding domain NA NA NA NA NA NA NA ENOG411ECEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411ECEY B'DELTA Q9ZQY6 2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform (AtB' delta) (PP2A, B' subunit, delta isoform) FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000250|UniProtKB:Q13362}. R-ATH-198753;R-ATH-202670;R-ATH-5673000;R-ATH-5675221; 55240 Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform (AtB' delta) (PP2A, B' subunit, delta isoform) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:10091592}. locus:2092080; AT3G26030 Protein phosphatase 2A regulatory B subunit (B56 family) NA NA NA NA NA NA NA ENOG411ECEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Embryogenesis transmembrane protein-like Embryogenesis transmembrane protein-like (Os06g0296900 protein),Os06g0297300 protein Q5Z6J3,A0A0P0WVS2 Q5Z6J3_ORYSJ,A0A0P0WVS2_ORYSJ OSJNBa0055N24.15 Os06g0296900 OSNPB_060296900,Os06g0297300 OSNPB_060297300 ENOG411ECEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized ACR COG1678 NA NA NA NA NA NA NA ENOG411ECEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DWNN domain DNA-binding protein-like (Os01g0762700 protein),Os03g0333501 protein,Os02g0785750 protein,Os03g0335100 protein (Fragment) Q8LR48,A0A0P0VX31,A0A0P0VQG4,A0A0P0VX64 Q8LR48_ORYSJ,A0A0P0VX31_ORYSJ,A0A0P0VQG4_ORYSJ,A0A0P0VX64_ORYSJ Os01g0762700 OsJ_03546 OSNPB_010762700 P0512C01.39,Os03g0333501 OSNPB_030333501,Os02g0785750 OSNPB_020785750,Os03g0335100 OSNPB_030335100 ENOG411ECEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation transporting ATPase C-terminus NA NA NA NA NA NA NA ENOG411E3F7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Helix-loop-helix DNA-binding domain containing protein, expressed (Os10g0376900 protein) (Putative helix-loop-helix DNA-binding protein) Q7XF89 Q7XF89_ORYSJ Os10g0376900 LOC_Os10g23050 Os10g0376900 OsJ_31307 OSJNBa0095C06.11 OSNPB_100376900 ENOG411DYII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NA NA NA NA NA NA NA ENOG411E3XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA reticulon-like protein B9-like NA NA NA NA NA NA NA ENOG411DSZ9 REV3 Q766Z3,F4HTM5,A0A1P8AMM8,A0A1P8AMN7,A0A1P8AMQ2 REV3_ARATH,F4HTM5_ARATH,A0A1P8AMM8_ARATH,A0A1P8AMN7_ARATH,A0A1P8AMQ2_ARATH DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (Protein reversionless 3-like) (AtREV3),DNA polymerase (EC 2.7.7.7) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are hypersensitive to UV-B light and gamma rays. {ECO:0000269|PubMed:12953110}. Showed high sensitivity to UV-B gamma-rays and DNA cross-linkers. Both REV1 and REV3 transcripts were suppressed rev1rev3 double mutants.,The root growth of mutant plants was inhibited after UV-B irradiation under both light and dark conditions. Mutant seedlings also were sensitive to gamma-rays and mitomycin C which are known to inhibit DNA replication. Incorporation of bromodeoxyuridine after UV-B irradiation was less in rev3-1 than in the wild type. Sensitive to UV-B light-A. Tanaka-2003 FUNCTION: Catalytic subunit of the error prone DNA polymerase zeta. Involved in damage-tolerance mechanisms through translesion DNA synthesis. {ECO:0000269|PubMed:12953110, ECO:0000269|PubMed:15908599, ECO:0000269|PubMed:21030509, ECO:0000269|PubMed:21549648}. R-ATH-110312;R-ATH-5655862;R-ATH-5656121; 2.7.7.7 210848,213748,210761,210889,181109 DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (Protein reversionless 3-like) (AtREV3),DNA polymerase (EC 2.7.7.7) nucleus [GO:0005634]; zeta DNA polymerase complex [GO:0016035]; 3'-5' exonuclease activity [GO:0008408]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to UV-C [GO:0071494]; DNA replication [GO:0006260]; error-prone translesion synthesis [GO:0042276],nucleus [GO:0005634]; zeta DNA polymerase complex [GO:0016035]; 3'-5' exonuclease activity [GO:0008408]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; response to UV [GO:0009411]; response to UV-B [GO:0010224],nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; 4 iron, 4 sulfur cluster binding [GO:0051539]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]; DNA replication [GO:0006260],3'-5' exonuclease activity [GO:0008408]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; nucleotide binding [GO:0000166]; DNA replication [GO:0006260] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:12953110}. locus:2008783; AT1G67500 DNA polymerase DNA polymerase zeta catalytic subunit-like protein (Os07g0669000 protein) (cDNA clone:J013012F23, full insert sequence),Os07g0209401 protein Q7EZT4,A0A0P0X3J1 Q7EZT4_ORYSJ,A0A0P0X3J1_ORYSJ P0625E02.117 Os07g0669000 OSNPB_070669000,Os07g0209401 OSNPB_070209401 ENOG411DSZ8 O22187 Y2232_ARATH Probable receptor-like protein kinase At2g23200 (EC 2.7.11.-) 2.7.11.- 93379 Probable receptor-like protein kinase At2g23200 (EC 2.7.11.-) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2058636; AT2G23200 receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DSZ4 PCMP-H74 Q9FRI5 PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 88586 Pentatricopeptide repeat-containing protein At1g25360 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2032955; AT1G25360 Pentatricopeptide repeat-containing protein Os07g0588100 protein (Pentatricopeptide (PPR) repeat-containing protein-like protein) Q6ZIP5 Q6ZIP5_ORYSJ Os07g0588100 OJ1047_C01.17 OSJNBb0005G07.111 OSNPB_070588100 ENOG411DSZ7 O48788,Q9LVM0 Y2267_ARATH,Y5830_ARATH Probable inactive receptor kinase At2g26730,Probable inactive receptor kinase At5g58300 71752,71899 Probable inactive receptor kinase At2g26730,Probable inactive receptor kinase At5g58300 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2043858;,locus:2161308; AT2G26730,AT5G58300 inactive receptor kinase Os05g0480400 protein (Putative phytosulfokine receptor kinase) (cDNA clone:J013025M17, full insert sequence),Os01g0819100 protein (Fragment) Q75GM0,A0A0N7KDZ0 Q75GM0_ORYSJ,A0A0N7KDZ0_ORYSJ Os05g0480400 Os05g0480400 OSJNBa0018K15.19 OSNPB_050480400,Os01g0819100 OSNPB_010819100 ENOG411DSZ0 HSP18.1,HSP17.6C,HSP18.5,HSP17.4A P19037,P13853,O64564,P19036 HS181_ARATH,HS17C_ARATH,HS185_ARATH,HSP17_ARATH 18.1 kDa class I heat shock protein (18.1 kDa heat shock protein) (AtHsp18.1),17.6 kDa class I heat shock protein 3 (17.6 kDa heat shock protein 3) (AtHsp17.6C),18.5 kDa class IV heat shock protein (18.5 kDa heat shock protein) (AtHsp18.5),17.4 kDa class I heat shock protein (17.4 kDa heat shock protein 1) (AtHsp17.4A) 18135,17604,18529,17440 18.1 kDa class I heat shock protein (18.1 kDa heat shock protein) (AtHsp18.1),17.6 kDa class I heat shock protein 3 (17.6 kDa heat shock protein 3) (AtHsp17.6C),18.5 kDa class IV heat shock protein (18.5 kDa heat shock protein) (AtHsp18.5),17.4 kDa class I heat shock protein (17.4 kDa heat shock protein 1) (AtHsp17.4A) cytoplasm [GO:0005737]; heat acclimation [GO:0010286]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542],cytoplasm [GO:0005737],cytoplasm [GO:0005737]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979],cytoplasm [GO:0005737]; response to heat [GO:0009408] locus:2174269;,locus:2024862;,locus:2047690;,locus:2075256; AT5G59720,AT1G53540,AT2G19310,AT3G46230 kDa class I heat shock 17.4 kDa class I heat shock protein (17.4 kDa heat shock protein) (OsHsp17.4),17.9 kDa class I heat shock protein (17.9 kDa heat shock protein 1) (OsHsp17.9A),17.7 kDa class I heat shock protein (17.7 kDa heat shock protein) (OsHsp17.7),18.1 kDa class I heat shock protein (18.1 kDa heat shock protein) (OsHsp18.1),Os03g0267100 protein P31673,Q84Q77,Q84J50,Q84Q72,Q0DT61 HS174_ORYSJ,HS17A_ORYSJ,HS177_ORYSJ,HS181_ORYSJ,Q0DT61_ORYSJ HSP17.4 Os03g0266900 LOC_Os03g16020 OJ1364E02.10 OsJ_10261,HSP17.9A RNB5 Os03g0266300 LOC_Os03g15960 OJ1364E02.6,HSP17.7 Os03g0267200 LOC_Os03g16040 OJ1364E02.12 OJA1364E02.1 OsJ_10263,HSP18.1 Os03g0267000 LOC_Os03g16030 OJ1364E02.11 OsJ_10262,Os03g0267100 OSNPB_030267100 ENOG411DSZ3 JUB1,NAC042 Q9SK55,A0A1P8B0B4 NAC42_ARATH,A0A1P8B0B4_ARATH Transcription factor JUNGBRUNNEN 1 (NAC domain-containing protein 42) (ANAC042),NAC domain containing protein 42 DISRUPTION PHENOTYPE: Precocious senescence and lowered abiotic stress tolerance. {ECO:0000269|PubMed:22345491}. FUNCTION: Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. 31456,22165 Transcription factor JUNGBRUNNEN 1 (NAC domain-containing protein 42) (ANAC042),NAC domain containing protein 42 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anthocyanin-containing compound biosynthetic process [GO:0009718]; camalexin biosynthetic process [GO:0010120]; hyperosmotic salinity response [GO:0042538]; leaf senescence [GO:0010150]; negative regulation of leaf senescence [GO:1900056]; proline biosynthetic process [GO:0006561]; transcription, DNA-templated [GO:0006351]; trehalose biosynthetic process [GO:0005992],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. locus:2045570; AT2G43000 nac domain NAC-domain containing protein 9, putative, expressed (Os03g0777000 protein) (Putative NAC domain protein) (Putative NAM (No apical meristem) protein),Os07g0138200 protein Q8S7I7,A0A0P0X2E5 Q8S7I7_ORYSJ,A0A0P0X2E5_ORYSJ OSJNBa0010I09.1 LOC_Os03g56580 Os03g0777000 OsJ_12786 OSJNBa0070N04.8 OSNPB_030777000,Os07g0138200 OSNPB_070138200 ENOG411DSZ2 FER3,FER2,FER1,FER4 Q9LYN2,Q9SRL5,Q39101,Q9S756 FRI3_ARATH,FRI2_ARATH,FRI1_ARATH,FRI4_ARATH Ferritin-3, chloroplastic (EC 1.16.3.1),Ferritin-2, chloroplastic (EC 1.16.3.1),Ferritin-1, chloroplastic (AtFer1) (EC 1.16.3.1),Ferritin-4, chloroplastic (EC 1.16.3.1) decreased leaf growth and CO2 fixation; impaired flower development and iron transport in the floral stalk.,morphological alterations in flowers or in siliques was observed when plants were grown in excess Fe. Mutants had no altered sensitivity with respect to wt in response to salinity osmotic stress cold stress nor oxidative stress. Germination sensitive to methyl viologen (inducer of oxidative stress)-F. Cellier-2009,Early senescence-C. Soave-2007 FUNCTION: Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation (By similarity). {ECO:0000250}. ARA:AT3G56090-MONOMER;,ARA:AT3G11050-MONOMER;,ARA:AT5G01600-MONOMER;,ARA:AT2G40300-MONOMER; R-ATH-6798695;R-ATH-917937; 1.16.3.1 28837,28378,28178,29029 Ferritin-3, chloroplastic (EC 1.16.3.1),Ferritin-2, chloroplastic (EC 1.16.3.1),Ferritin-1, chloroplastic (AtFer1) (EC 1.16.3.1),Ferritin-4, chloroplastic (EC 1.16.3.1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ferric iron binding [GO:0008199]; ferroxidase activity [GO:0004322]; iron ion binding [GO:0005506]; flower development [GO:0009908]; intracellular sequestering of iron ion [GO:0006880]; iron ion homeostasis [GO:0055072]; iron ion transport [GO:0006826]; leaf development [GO:0048366]; photosynthesis [GO:0015979]; response to iron ion [GO:0010039]; response to reactive oxygen species [GO:0000302],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; ferric iron binding [GO:0008199]; ferroxidase activity [GO:0004322]; iron ion binding [GO:0005506]; intracellular sequestering of iron ion [GO:0006880]; iron ion transport [GO:0006826]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; ferric iron binding [GO:0008199]; ferroxidase activity [GO:0004322]; iron ion binding [GO:0005506]; protein domain specific binding [GO:0019904]; flower development [GO:0009908]; intracellular sequestering of iron ion [GO:0006880]; iron ion homeostasis [GO:0055072]; iron ion transport [GO:0006826]; leaf development [GO:0048366]; photosynthesis [GO:0015979]; response to bacterium [GO:0009617]; response to cold [GO:0009409]; response to cytokinin [GO:0009735]; response to hydrogen peroxide [GO:0042542]; response to iron ion [GO:0010039]; response to reactive oxygen species [GO:0000302]; response to zinc ion [GO:0010043],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ferric iron binding [GO:0008199]; ferroxidase activity [GO:0004322]; iron ion binding [GO:0005506]; flower development [GO:0009908]; intracellular sequestering of iron ion [GO:0006880]; iron ion homeostasis [GO:0055072]; iron ion transport [GO:0006826]; leaf development [GO:0048366]; photosynthesis [GO:0015979]; response to iron ion [GO:0010039]; response to reactive oxygen species [GO:0000302] locus:2078481;,locus:2074683;,locus:2149755;,locus:2063104; AT3G56090,AT3G11050,AT5G01600,AT2G40300 Stores iron in a soluble non-toxic readily available form. Important for iron homeostasis (By similarity) Ferritin (EC 1.16.3.1) Q8L5K0,A0A0N7KSB1 Q8L5K0_ORYSJ,A0A0N7KSB1_ORYSJ Fer2 LOC_Os12g01530 Os12g0106000 OSNPB_120106000,Os11g0106700 OSNPB_110106700 FUNCTION: Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. {ECO:0000256|RuleBase:RU361145}. ENOG411DSZM THFS Q9SPK5,Q9ZUQ5,Q9ZUP9 FTHS_ARATH,Q9ZUQ5_ARATH,Q9ZUP9_ARATH Formate--tetrahydrofolate ligase (EC 6.3.4.3) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS) (Formyltetrahydrofolate synthetase),10-formyltetrahydrofolate synthetase (P-loop containing nucleoside triphosphate hydrolases superfamily protein) PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. ARA:AT1G50480-MONOMER;,ARA:AT2G12200-MONOMER;,ARA:AT2G12280-MONOMER; R-ATH-196757; Carbon fixation pathways in prokaryotes (00720),Microbial metabolism in diverse environments (01120),One carbon pool by folate (00670),Metabolic pathways (01100) 6.3.4.3 67802,6932,9892 Formate--tetrahydrofolate ligase (EC 6.3.4.3) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS) (Formyltetrahydrofolate synthetase),10-formyltetrahydrofolate synthetase (P-loop containing nucleoside triphosphate hydrolases superfamily protein) apoplast [GO:0048046]; chloroplast [GO:0009507]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; formate-tetrahydrofolate ligase activity [GO:0004329]; methenyltetrahydrofolate cyclohydrolase activity [GO:0004477]; methylenetetrahydrofolate dehydrogenase (NADP+) activity [GO:0004488]; 10-formyltetrahydrofolate biosynthetic process [GO:0009257]; purine nucleobase biosynthetic process [GO:0009113]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; tetrahydrofolate interconversion [GO:0035999],cytosol [GO:0005829]; ATP binding [GO:0005524]; formate-tetrahydrofolate ligase activity [GO:0004329]; methenyltetrahydrofolate cyclohydrolase activity [GO:0004477]; methylenetetrahydrofolate dehydrogenase (NADP+) activity [GO:0004488]; one-carbon metabolic process [GO:0006730] locus:2008101;,locus:2054213;,locus:2054192; AT1G50480,AT2G12200,AT2G12280 Formate--tetrahydrofolate Os09g0446800 protein (Putative formate--tetrahydrofolate ligase),Os09g0446800 protein Q67UE5,Q0J1E1 Q67UE5_ORYSJ,Q0J1E1_ORYSJ Os09g0446800 OJ1596_C06.3 OsJ_29562 OSNPB_090446800,Os09g0446800 OSNPB_090446800 ENOG411DSZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DSZD MRH10.12 A0A1P8B9I7,A0A1P8B9K4,A0A1P8B9J1,F4K7F0 A0A1P8B9I7_ARATH,A0A1P8B9K4_ARATH,A0A1P8B9J1_ARATH,F4K7F0_ARATH Fanconi anemia group F protein (FANCF) 32815,45280,43323,40790 Fanconi anemia group F protein (FANCF) locus:2172437; AT5G44010 Fanconi anemia group F protein (FANCF) Os02g0814600 protein Q0DWI0 Q0DWI0_ORYSJ Os02g0814600 Os02g0814600 OSNPB_020814600 ENOG411DSZG BUG22 Q93ZI1 Q93ZI1_ARATH AT3g12300/F28J15_117 (Cilia/flagella-associated protein) 22105 AT3g12300/F28J15_117 (Cilia/flagella-associated protein) locus:2082184; AT3G12300 Protein of unknown function (DUF667) Os09g0510200 protein (Fragment) Q0J0G8 Q0J0G8_ORYSJ Os09g0510200 OSNPB_090510200 ENOG411DSZF AAAS Q8GWR1 AAAS_ARATH Aladin 48486 Aladin endoplasmic reticulum [GO:0005783]; nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; mRNA transport [GO:0051028]; nucleocytoplasmic transport [GO:0006913]; protein transport [GO:0015031] locus:2103620; AT3G56900 WD domain G-beta repeat Os11g0132700 protein (cDNA clone:J033124M23, full insert sequence),Os12g0129400 protein (cDNA, clone: J065154E06, full insert sequence),Os12g0131300 protein,Os12g0129650 protein Q0IUV5,B7F8R8,C7JA03,A0A0N7KTI7 Q0IUV5_ORYSJ,B7F8R8_ORYSJ,C7JA03_ORYSJ,A0A0N7KTI7_ORYSJ Os11g0132700 Os11g0132700 OSNPB_110132700,Os12g0129400 OSNPB_120129400,Os12g0131300 Os12g0131300 OSNPB_120131300,Os12g0129650 OSNPB_120129650 ENOG411DSZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein B3 domain-containing protein Os01g0723500 Q8S2E6 Y1235_ORYSJ Os01g0723500 LOC_Os01g52514 P0022F10.16 ENOG411DSZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHROMO NA NA NA NA NA NA NA ENOG411DSZY THH1,TOM1,TOM3 Q948R8,Q9FEG2,Q9ZUM2 THH1_ARATH,TOM1_ARATH,TOM3_ARATH Protein TOM THREE HOMOLOG 1,Tobamovirus multiplication protein 1 (AtTOM1),Tobamovirus multiplication protein 3 (AtTOM3) DISRUPTION PHENOTYPE: When associated with TOM1 disruption, reduced efficiency of intracellular multiplication of tobamoviruses (e.g. crucifer strain TMV-Cg), characterized by a reduced accumulation of viral coat protein (CP) and reduced amplification of TMV-related RNAs. {ECO:0000269|PubMed:16847136}.,DISRUPTION PHENOTYPE: Reduced efficiency of intracellular multiplication of tobamoviruses (e.g. crucifer strain TMV-Cg), characterized by a reduced accumulation of viral coat protein (CP) and reduced amplification of TMV-related RNAs. {ECO:0000269|PubMed:10944200, ECO:0000269|PubMed:8350399}.,DISRUPTION PHENOTYPE: When associated with TOM1 disruption, reduced efficiency of intracellular multiplication of tobamoviruses (e.g. crucifer strain TMV-Cg), characterized by a reduced accumulation of viral coat protein (CP) and reduced amplification of TMV-related RNAs. {ECO:0000269|PubMed:11836427}. Resistant to tobacco mosaic virus-M. Ishikawa-2000 FUNCTION: Contributes to the intracellular multiplication of tobamoviruses, probably being a membrane anchor promoting the formation of the replication complex. {ECO:0000269|PubMed:16847136}.,FUNCTION: Necessary for the efficient intracellular multiplication of tobamoviruses, probably being a membrane anchor promoting the formation of the replication complex. {ECO:0000269|PubMed:10944200, ECO:0000269|PubMed:8350399}.,FUNCTION: Contributes to the intracellular multiplication of tobamoviruses, probably being a membrane anchor promoting the formation of the replication complex. {ECO:0000269|PubMed:11836427}. 34049,33009,34989 Protein TOM THREE HOMOLOG 1,Tobamovirus multiplication protein 1 (AtTOM1),Tobamovirus multiplication protein 3 (AtTOM3) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; viral replication complex formation and maintenance [GO:0046786],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; viral replication complex formation and maintenance [GO:0046786] locus:2012552;,locus:2119088;,locus:2051663; AT1G14530,AT4G21790,AT2G02180 Tobamovirus multiplication Os03g0120300 protein (Putative transmembrane protein) (Tobamovirus multiplication protein 3, putative, expressed) (cDNA clone:J013075C10, full insert sequence),Os10g0537500 protein (Putative transmembrane protein) (Tobamovirus multiplication protein 3, putative, expressed) (cDNA clone:006-305-E02, full insert sequence) (cDNA clone:J033034D12, full insert sequence),Os03g0565600 protein (Tobamovirus multiplication protein 3, putative, expressed) (cDNA clone:J013170P13, full insert sequence),Os07g0102400 protein (Putative transmembrane protein(TOM3)) Q8LMS2,Q8LNN5,Q10I36,Q69L84 Q8LMS2_ORYSJ,Q8LNN5_ORYSJ,Q10I36_ORYSJ,Q69L84_ORYSJ Os03g0120300 LOC_Os03g02850 Os03g0120300 OJ1263H11.14 OJ1705B08.1 OsJ_09204 OSNPB_030120300,OSJNBa0040D23.4 Os10g0537500 LOC_Os10g39220 OsJ_32290 OSNPB_100537500,Os03g0565600 LOC_Os03g36790 OSNPB_030565600,Os07g0102400 B1026C12.34 OsJ_22778 OSNPB_070102400 ENOG411DSZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutamate-gated kainate-type ion channel receptor subunit GluR5 Os06g0155000 protein A0A0P0WSG6 A0A0P0WSG6_ORYSJ Os06g0155000 OSNPB_060155000 ENOG411DSZZ MOS2 Q9C801,Q9SW24 MOS2_ARATH,Q9SW24_ARATH Protein MOS2,At4g25020 (D111/G-patch domain-containing protein) (Uncharacterized protein AT4g25020) (Uncharacterized protein F13M23.160) Susceptible to avirulent bacteria-X. Li-2005 FUNCTION: Required for innate and induced resistance to pathogens such as compatible and incompatible isolates of P.syringae and P.parasitica. {ECO:0000269|PubMed:16271871}. R-ATH-72163; 51027,41842 Protein MOS2,At4g25020 (D111/G-patch domain-containing protein) (Uncharacterized protein AT4g25020) (Uncharacterized protein F13M23.160) nucleus [GO:0005634]; RNA binding [GO:0003723]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response to bacterium [GO:0042742],nucleic acid binding [GO:0003676] locus:2007033;,locus:2117278; AT1G33520,AT4G25020 G_patch G-patch domain containing protein, expressed (Os03g0253500 protein),Os01g0101500 protein (p0402A09.10 protein) (p0455C04.4 protein) Q10NZ4,Q7F2F6 Q10NZ4_ORYSJ,Q7F2F6_ORYSJ Os03g0253500 LOC_Os03g14860 Os03g0253500 OsJ_36635 OSNPB_030253500,P0402A09.10 Os01g0101500 P0455C04.4 OsJ_07437 OSNPB_010101500 ENOG411DSZU PCMP-E12 O23491 PP315_ARATH Pentatricopeptide repeat-containing protein At4g16470 56799 Pentatricopeptide repeat-containing protein At4g16470 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2130679; AT4G16470 PPR repeat Os06g0625800 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q67VS6 Q67VS6_ORYSJ Os06g0625800 OSJNBa0072A21.16 OSNPB_060625800 ENOG411DSZT SKIP35 Q9M1Y3,A0A1P8B199,O80579 SKI35_ARATH,A0A1P8B199_ARATH,O80579_ARATH Ankyrin repeat protein SKIP35 (SKP1-interacting partner 35),Ankyrin repeat family protein,AT2G44090 protein (Ankyrin repeat family protein) (At2g44090/F6E13.22) (Expressed protein) 67059,49088,64116 Ankyrin repeat protein SKIP35 (SKP1-interacting partner 35),Ankyrin repeat family protein,AT2G44090 protein (Ankyrin repeat family protein) (At2g44090/F6E13.22) (Expressed protein) locus:2080512;,locus:2051819; AT3G59910,AT2G44090 F-box ankyrin repeat protein Os11g0246900 protein (Fragment) Q0ITK4,A0A0P0Y0T3 Q0ITK4_ORYSJ,A0A0P0Y0T3_ORYSJ Os11g0246900 OSNPB_110246900 ENOG411DSZW A1L4Y1,F4J3Q8 A1L4Y1_ARATH,F4J3Q8_ARATH At3g10350 (P-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein 44754,47263 At3g10350 (P-loop containing nucleoside triphosphate hydrolases superfamily protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; ATPase activity [GO:0016887],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] locus:2076329; AT3G10350 Arsenical pump-driving Os02g0745000 protein (Fragment) Q0DXL7 Q0DXL7_ORYSJ Os02g0745000 Os02g0745000 OSNPB_020745000 ENOG411DSZV BG3,BG1,BG2,BGL2 F4J270,Q9M2M0,Q8VZJ2,P33157,A0A1P8B3U2,A0A1I9LMG6 BG3_ARATH,BG1_ARATH,BGNEM_ARATH,E13A_ARATH,A0A1P8B3U2_ARATH,A0A1I9LMG6_ARATH Probable glucan endo-1,3-beta-glucosidase BG3 (EC 3.2.1.39) (Beta-1,3-glucanase 3) (AtBG3),Probable glucan endo-1,3-beta-glucosidase BG1 (EC 3.2.1.39) (Beta-1,3-glucanase 1) (AtBG1),Probable glucan endo-1,3-beta-glucosidase At4g16260 (EC 3.2.1.39),Glucan endo-1,3-beta-glucosidase, acidic isoform (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase 2) (AtBG2) (Pathogenesis-related protein 2) (PR-2),Glycosyl hydrolase superfamily protein,Beta-1,3-glucanase 2 FUNCTION: May play a role in plant defense against pathogens. {ECO:0000305|PubMed:23656331}.,FUNCTION: May play a role in plant defense against pathogens. {ECO:0000250|UniProtKB:F4J270}.,FUNCTION: May be involved in plant defense against cyst nematode pathogens. {ECO:0000269|PubMed:22442414}.,FUNCTION: Implicated in the defense of plants against pathogens (Probable). Not involved in plasmodesmal callose degradation and in the gating of plasmodesmata during tobamovirus infection (PubMed:23656331). {ECO:0000269|PubMed:23656331, ECO:0000305|PubMed:1392589}. ARA:AT3G57270-MONOMER;,ARA:AT4G16260-MONOMER;,ARA:AT3G57260-MONOMER; 3.2.1.39 37632,37655,37712,37339,34654,39380 Probable glucan endo-1,3-beta-glucosidase BG3 (EC 3.2.1.39) (Beta-1,3-glucanase 3) (AtBG3),Probable glucan endo-1,3-beta-glucosidase BG1 (EC 3.2.1.39) (Beta-1,3-glucanase 1) (AtBG1),Probable glucan endo-1,3-beta-glucosidase At4g16260 (EC 3.2.1.39),Glucan endo-1,3-beta-glucosidase, acidic isoform (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase 2) (AtBG2) (Pathogenesis-related protein 2) (PR-2),Glycosyl hydrolase superfamily protein,Beta-1,3-glucanase 2 anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; vacuole [GO:0005773]; cellulase activity [GO:0008810]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; response to bacterium [GO:0009617],anchored component of plasma membrane [GO:0046658]; extracellular region [GO:0005576]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response [GO:0006952],anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; extracellular region [GO:0005576]; vacuolar membrane [GO:0005774]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; defense response to fungus, incompatible interaction [GO:0009817]; defense response to nematode [GO:0002215]; response to salt stress [GO:0009651],anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; vacuole [GO:0005773]; cellulase activity [GO:0008810]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; glucan exo-1,3-beta-glucosidase activity [GO:0004338]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; response to cold [GO:0009409]; systemic acquired resistance [GO:0009627],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2082518;,locus:2082568;,locus:2130329;,locus:2082543; AT3G57240,AT3G57270,AT4G16260,AT3G57260 glucan endo-1-3-beta-glucosidase Os01g0940800 protein (Putative beta-1,3-glucanase) (cDNA clone:J013136H16, full insert sequence),Beta-1,3-glucanase (Os01g0713200 protein) (cDNA clone:001-034-G03, full insert sequence) (cDNA clone:006-301-D12, full insert sequence) (cDNA clone:006-308-D11, full insert sequence),Os01g0940700 protein (Putative beta-1,3-glucanase),Os01g0942300 protein (Fragment),Os01g0940700 protein (Putative beta-1,3-glucanase) (cDNA clone:001-043-E09, full insert sequence),Os01g0944800 protein (Fragment),Os01g0947700 protein,Os01g0944500 protein (Fragment) Q8S9R1,Q7F354,Q5JKK9,Q0JG51,Q7F164,A0A0P0VCU3,A0A0N7KEE7,A0A0P0VCW2 Q8S9R1_ORYSJ,Q7F354_ORYSJ,Q5JKK9_ORYSJ,Q0JG51_ORYSJ,Q7F164_ORYSJ,A0A0P0VCU3_ORYSJ,A0A0N7KEE7_ORYSJ,A0A0P0VCW2_ORYSJ Os01g0940800 Os01g0940800 OsJ_18737 OSNPB_010940800 P0432C03.11,Os01g0713200 B1142C05.26 OsJ_03233 OSNPB_010713200,P0432C03.10-2 Os01g0940700 OSNPB_010940700,Os01g0942300 Os01g0942300 OSNPB_010942300,P0432C03.10-1 Os01g0940700 OsJ_18736 OSNPB_010940700,Os01g0944800 OSNPB_010944800,Os01g0947700 OSNPB_010947700,Os01g0944500 OSNPB_010944500 ENOG411DSZQ Q38953 DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) FUNCTION: May be involved in pre-mRNA splicing. {ECO:0000305}. 3.6.4.13 134157 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasmodesma [GO:0009506]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398] locus:2088847; AT3G26560 Pre-mRNA-splicing factor ATP-dependent RNA Os02g0301500 protein (Fragment),Os06g0343100 protein (Putative RNA helicase),Os06g0343100 protein (Fragment) Q0E1V1,Q5Z9X4,A0A0P0WW86 Q0E1V1_ORYSJ,Q5Z9X4_ORYSJ,A0A0P0WW86_ORYSJ Os02g0301500 Os02g0301500 OSNPB_020301500,Os06g0343100 OSNPB_060343100 P0459H02.22,Os06g0343100 OSNPB_060343100 ENOG411DSZP F4I5J7 F4I5J7_ARATH DNAJ heat shock N-terminal domain-containing protein 42826 DNAJ heat shock N-terminal domain-containing protein locus:2025252; AT1G77020 chaperone protein dnaJ Os02g0555700 protein (Putative DNA J domain protein) Q6ZI90 Q6ZI90_ORYSJ Os02g0555700 Os02g0555700 OJ1008_F08.4 OSNPB_020555700 P0470G10.35 ENOG411DSZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lung seven transmembrane receptor Os07g0614600 protein (cDNA, clone: J090095G09, full insert sequence) B7F9V1 B7F9V1_ORYSJ Os07g0614600 OSNPB_070614600 ENOG411DSZR PURA1 Q9SKZ1 PUR_ARATH Transcription factor Pur-alpha 1 (Purine-rich single-stranded DNA-binding protein alpha 1) FUNCTION: Transcription factor that specifically binds the purine-rich double-stranded telomeric repeated sequence 5'-AAACCCTAA-3' found in promoter telo boxes. {ECO:0000269|PubMed:10652127}. 32201 Transcription factor Pur-alpha 1 (Purine-rich single-stranded DNA-binding protein alpha 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; regulation of transcription, DNA-templated [GO:0006355]; response to cadmium ion [GO:0046686]; transcription, DNA-templated [GO:0006351] locus:2045497; AT2G32080 Transcription factor Pur-alpha Os01g0260700 protein A0A0P0V197 A0A0P0V197_ORYSJ Os01g0260700 OSNPB_010260700 ENOG411EHXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Guanylate cyclase NA NA NA NA NA NA NA ENOG411EHXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0456200 protein) (cDNA clone:006-202-E04, full insert sequence) Q2R4Y2 Q2R4Y2_ORYSJ Os11g0456200 LOC_Os11g26900 Os11g0456200 OsJ_33808 OSNPB_110456200 ENOG411EHXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MaoC like domain NA NA NA NA NA NA NA ENOG411E21F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411E21G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0636300 protein A0A0P0WZ84 A0A0P0WZ84_ORYSJ Os06g0636300 OSNPB_060636300 ENOG411E21D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine carboxypeptidase-like 45-like NA NA NA NA NA NA NA ENOG411E21E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os04g0685600 protein A0A0N7KJY7 A0A0N7KJY7_ORYSJ Os04g0685600 OSNPB_040685600 ENOG411E21B CDF3 Q8LFV3 CDF3_ARATH Cyclic dof factor 3 (Dof zinc finger protein DOF3.3) (AtDOF3.3) (H-protein promoter-binding factor 2a) DISRUPTION PHENOTYPE: No alteration in flowering time, probably due to the redundancy with CDF1, CDF2 and CDF5. {ECO:0000269|PubMed:19619493}. Under FRc conditions the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is similar to that of wild type. Short hypocotyl under red light-P. Quail-2006 FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. 49730 Cyclic dof factor 3 (Dof zinc finger protein DOF3.3) (AtDOF3.3) (H-protein promoter-binding factor 2a) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. locus:2079152; AT3G47500 dof zinc finger protein NA NA NA NA NA NA NA ENOG411E21C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0483100 protein) Q8LNW0 Q8LNW0_ORYSJ LOC_Os10g34200 Os10g0483100 OsJ_31928 OSJNBa0012L23.49 OSNPB_100483100 ENOG411E21A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polyphosphate kinase middle domain NA NA NA NA NA NA NA ENOG411E21N Q94AB8,O80895,F4ITS6 Q94AB8_ARATH,O80895_ARATH,F4ITS6_ARATH At1g05070/T7A14_6 (Transmembrane protein, putative (DUF1068)),Expressed protein (Transmembrane protein, putative (DUF1068)) (Uncharacterized protein At2g32580),Transmembrane protein, putative (DUF1068) 20264,19967,13684 At1g05070/T7A14_6 (Transmembrane protein, putative (DUF1068)),Expressed protein (Transmembrane protein, putative (DUF1068)) (Uncharacterized protein At2g32580),Transmembrane protein, putative (DUF1068) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2205543;,locus:2060268; AT1G05070,AT2G32580 Protein of unknown function (DUF1068) Expressed protein (Os03g0777500 protein) (cDNA clone:001-107-G11, full insert sequence) Q8S7I4 Q8S7I4_ORYSJ OSJNBa0010I09.2 LOC_Os03g56610 Os03g0777500 OsJ_12789 OSJNBa0070N04.9 OSNPB_030777500 ENOG411E21M O80854 B561L_ARATH Cytochrome b561 domain-containing protein At2g30890 (Protein b561A.tha12) 29063 Cytochrome b561 domain-containing protein At2g30890 (Protein b561A.tha12) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2052846; AT2G30890 Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411E21J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411E21K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Potassium transporter 27 (OsHAK27) Q84MS4 HAK27_ORYSJ HAK27 Os03g0574900 LOC_Os03g37830 OSJNBa0029P07.16 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411E21H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0441900 protein (Protein kinase domain containing protein, expressed) (Protein kinase domain, putative) (cDNA clone:002-138-D05, full insert sequence) Q53KF8 Q53KF8_ORYSJ LOC_Os11g25510 Os11g0441900 OSNPB_110441900 ENOG411E21I Q1G378,Q501B0 Q1G378_ARATH,Q501B0_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein,At2g46780 (RNA-binding (RRM/RBD/RNP motifs) family protein) 19900,36705 RNA-binding (RRM/RBD/RNP motifs) family protein,At2g46780 (RNA-binding (RRM/RBD/RNP motifs) family protein) integral component of membrane [GO:0016021]; RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:4515103555;,locus:2044370; AT5G11412,AT2G46780 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E21V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aluminium activated malate transporter NA NA NA NA NA NA NA ENOG411E21W TSM1,CCOAMT Q9C9W4,Q9C9W3,Q9FXJ9,F4HVJ6,F4IAT5,F4IAT4 TSM1_ARATH,CAMT1_ARATH,Q9FXJ9_ARATH,F4HVJ6_ARATH,F4IAT5_ARATH,F4IAT4_ARATH Tapetum-specific methyltransferase 1 (AtTSM1) (EC 2.1.1.-) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT),Putative caffeoyl-CoA O-methyltransferase At1g67980 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT),F5A9.20 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),Caffeoyl-CoA 3-O-methyltransferase,S-adenosyl-L-methionine-dependent methyltransferases superfamily protein FUNCTION: Methyltransferase involved in phenylpropanoid polyamine conjugate biosynthesis. In vivo, methylates only one of the 5-hydroxyferuloyl moieties of N1,N5,N10-tri-(hydroxyferuloyl)-spermidine, while is able in vitro to convert all three 5-hydroxyferuloyl residues to the corresponding sinapoyl moieties and to methylate caffeoyl CoA and tricaffeoyl spermidine. {ECO:0000269|PubMed:18557837, ECO:0000269|PubMed:19077165, ECO:0000269|PubMed:19762055}.,FUNCTION: Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers (By similarity). {ECO:0000250}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. ARA:AT1G67990-MONOMER;MetaCyc:AT1G67990-MONOMER;,ARA:AT1G67980-MONOMER;,ARA:AT1G24735-MONOMER; 2.1.1.-,2.1.1.104 26350,26114,21855,18645,27025,33157 Tapetum-specific methyltransferase 1 (AtTSM1) (EC 2.1.1.-) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT),Putative caffeoyl-CoA O-methyltransferase At1g67980 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT),F5A9.20 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),Caffeoyl-CoA 3-O-methyltransferase,S-adenosyl-L-methionine-dependent methyltransferases superfamily protein caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity [GO:0080076]; caffeoyl-CoA O-methyltransferase activity [GO:0042409]; metal ion binding [GO:0046872]; tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity [GO:0080078]; trihydroxyferuloyl spermidine O-methyltransferase activity [GO:0080012]; trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity [GO:0080077]; lignin biosynthetic process [GO:0009809]; seed development [GO:0048316]; spermidine hydroxycinnamate conjugate biosynthetic process [GO:0080088],cytosol [GO:0005829]; caffeoyl-CoA O-methyltransferase activity [GO:0042409]; metal ion binding [GO:0046872]; lignin biosynthetic process [GO:0009809],O-methyltransferase activity [GO:0008171] DEVELOPMENTAL STAGE: Expressed only in early stages of flower development. {ECO:0000269|PubMed:20869941}. TISSUE SPECIFICITY: Expressed in inflorescences and flower buds. Not detected in roots, leaves or stems. Located exclusively in the tapetum of developing stamen. {ECO:0000269|PubMed:18557837, ECO:0000269|PubMed:19762055}. locus:2200256;,locus:2200271;,locus:2826087; AT1G67990,AT1G67980,AT1G24735 o-methyltransferase NA NA NA NA NA NA NA ENOG411E21T Q9ZW80 Q9ZW80_ARATH Proline-rich extensin-like family protein (Putative extensin) 23429 Proline-rich extensin-like family protein (Putative extensin) structural constituent of cell wall [GO:0005199]; plant-type cell wall organization [GO:0009664] locus:2041061; AT2G43150 Pollen proteins Ole e I like Os01g0899700 protein (Putative extensin) (cDNA clone:002-171-D09, full insert sequence) Q5N8V9 Q5N8V9_ORYSJ Os01g0899700 Os01g0899700 OsJ_04426 OSNPB_010899700 P0035F12.2 ENOG411E21U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0005 NA NA NA NA NA NA NA ENOG411E21R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Possible Fer4-like domain in RNase L inhibitor RLI Os02g0282900 protein (Putative 68 kDa protein HP68) (cDNA clone:J033034C12, full insert sequence) Q6K3B8 Q6K3B8_ORYSJ Os02g0282900 Os02g0282900 OsJ_06269 OSJNBa0063E14.35 OSNPB_020282900 ENOG411E21S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411E21P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBP domain Squamosa promoter-binding-like protein 5 Q0E3F8 SPL5_ORYSJ SPL5 Os02g0177300 LOC_Os02g08070 P0504A05.16 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. ENOG411E21Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os12g0481000 protein A0A0P0YA69 A0A0P0YA69_ORYSJ Os12g0481000 OSNPB_120481000 ENOG411E21Z Q5XVH5,Q9FGV2 Y1710_ARATH,Q9FGV2_ARATH Uncharacterized protein At1g65710,At5g37010 (Gb|AAF23841.1) (Putative serine-rich protein) (Rho GTPase-activating protein) 50022,69196 Uncharacterized protein At1g65710,At5g37010 (Gb|AAF23841.1) (Putative serine-rich protein) (Rho GTPase-activating protein) locus:2018556;,locus:2152637; AT1G65710,AT5G37010 NA OSJNBa0074L08.7 protein (Os04g0528600 protein),Os02g0734667 protein,Os07g0102800 protein,Os07g0102700 protein,Os01g0946800 protein,Os04g0322700 protein Q7XUM1,A0A0P0VP82,A0A0P0X1F4,A0A0P0X1D0,A0A0P0VCW4,A0A0P0W8Y4 Q7XUM1_ORYSJ,A0A0P0VP82_ORYSJ,A0A0P0X1F4_ORYSJ,A0A0P0X1D0_ORYSJ,A0A0P0VCW4_ORYSJ,A0A0P0W8Y4_ORYSJ OSJNBa0074L08.7 Os04g0528600 OSNPB_040528600,Os02g0734667 OSNPB_020734667,Os07g0102800 OSNPB_070102800,Os07g0102700 OSNPB_070102700,Os01g0946800 OSNPB_010946800,Os04g0322700 OSNPB_040322700 ENOG411E21X BHLH123 Q8GXT3,A0A1I9LLG5,A0A1I9LLG7,A0A1I9LLG6 BH123_ARATH,A0A1I9LLG5_ARATH,A0A1I9LLG7_ARATH,A0A1I9LLG6_ARATH Transcription factor bHLH123 (Basic helix-loop-helix protein 123) (AtbHLH123) (bHLH 123) (Transcription factor EN 63) (bHLH transcription factor bHLH123),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 49064,41972,42597,43987 Transcription factor bHLH123 (Basic helix-loop-helix protein 123) (AtbHLH123) (bHLH 123) (Transcription factor EN 63) (bHLH transcription factor bHLH123),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2083460; AT3G20640 Transcription factor NA NA NA NA NA NA NA ENOG411E21Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, expressed (Os10g0521400 protein) (Putative alpha/beta hydrolase),Os03g0116316 protein Q9FWB6,A0A0N7KGG8 Q9FWB6_ORYSJ,A0A0N7KGG8_ORYSJ Os10g0521400 LOC_Os10g37710 Os10g0521400 OsJ_32190 OSJNBb0018B10.24 OSNPB_100521400,Os03g0116316 OSNPB_030116316 ENOG411E216 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 9 Endoglucanase 5 (EC 3.2.1.4) (Endo-1,4-beta glucanase 5) Q67UW5 GUN5_ORYSJ Os02g0151300 LOC_Os02g05744 OSJNBa0050G13.22 ENOG411E217 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein Protein MOTHER of FT and TFL1 homolog 1 (OsMFT1) Q656A5 MFT1_ORYSJ MFT1 Os06g0498800 LOC_Os06g30370 P0596H06.13 FUNCTION: May form complexes with phosphorylated ligands by interfering with kinases and their effectors. {ECO:0000250|UniProtKB:P30086}. ENOG411E214 NUDT26 Q9CAF2 NUD26_ARATH Nudix hydrolase 26, chloroplastic (AtNUDT26) (EC 3.6.1.-) (Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A), diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A) and diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A) as substrates. {ECO:0000269|PubMed:18815383}. ARA:AT3G10620-MONOMER; 3.6.1.- 24617 Nudix hydrolase 26, chloroplastic (AtNUDT26) (EC 3.6.1.-) (Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)) chloroplast [GO:0009507]; bis(5'-adenosyl)-pentaphosphatase activity [GO:0034432]; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [GO:0008893]; metal ion binding [GO:0046872]; nucleoside phosphate metabolic process [GO:0006753] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2075840; AT3G10620 nudix hydrolase 26 Os04g0685800 protein A0A0P0WGN9 A0A0P0WGN9_ORYSJ Os04g0685800 OSNPB_040685800 ENOG411E215 ATL3,ATL60 Q9XF63,P0C035 ATL3_ARATH,ATL60_ARATH RING-H2 finger protein ATL3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL3),RING-H2 finger protein ATL60 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL60) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 35942,34832 RING-H2 finger protein ATL3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL3),RING-H2 finger protein ATL60 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL60) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2193992;,locus:2197026; AT1G72310,AT1G53820 RING-H2 finger protein Os06g0192800 protein (cDNA clone:J023035D03, full insert sequence) B7EH89 B7EH89_ORYSJ Os06g0192800 OSNPB_060192800 ENOG411E212 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E213 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-box binding protein MFMR Os02g0128200 protein (Putative transcription factor HBP-1a) (cDNA clone:006-209-B12, full insert sequence) (cDNA clone:J023076M20, full insert sequence) Q6Z2L2 Q6Z2L2_ORYSJ Os02g0128200 OsJ_05225 OSNPB_020128200 P0482F12.32 P0576F08.5 ENOG411E210 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0144300 protein,Os03g0678950 protein Q5ZBL7,A0A0P0W1D2 Q5ZBL7_ORYSJ,A0A0P0W1D2_ORYSJ Os01g0144300 OSNPB_010144300 P0024G09.32,Os03g0678950 OSNPB_030678950 ENOG411E211 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multicopper oxidase NA NA NA NA NA NA NA ENOG411E218 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lung seven transmembrane receptor domain containing protein OSJNBa0043L24.20 protein (Os04g0508600 protein),Os04g0371550 protein,Os02g0618700 protein (cDNA clone:J023056H15, full insert sequence) Q7XM97,B9FER1,Q0DZH4 Q7XM97_ORYSJ,B9FER1_ORYSJ,Q0DZH4_ORYSJ Os04g0508600 Os04g0508600 OsJ_15412 OSJNBa0043L24.20 OSNPB_040508600,Os04g0371550 OsJ_14469 OSNPB_040371550,Os02g0618700 Os02g0618700 OsJ_07550 OSNPB_020618700 ENOG411E219 PUB32 Q94A51,F4IWQ9,A0A1I9LPB5 PUB32_ARATH,F4IWQ9_ARATH,A0A1I9LPB5_ARATH U-box domain-containing protein 32 (EC 2.3.2.27) (Plant U-box protein 32) (RING-type E3 ubiquitin transferase PUB32),U-box domain-containing protein kinase family protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 91593,90256,87905 U-box domain-containing protein 32 (EC 2.3.2.27) (Plant U-box protein 32) (RING-type E3 ubiquitin transferase PUB32),U-box domain-containing protein kinase family protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ubiquitin-protein transferase activity [GO:0004842],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ubiquitin-protein transferase activity [GO:0004842] locus:2101353; AT3G49060 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411EJ18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411EJ17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EJ14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like NA NA NA NA NA NA NA ENOG411EJ12 CYP702A3 F4JJG4 F4JJG4_ARATH Cytochrome P450, family 702, subfamily A, polypeptide 3 R-ATH-211916;R-ATH-5365859; 53931 Cytochrome P450, family 702, subfamily A, polypeptide 3 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] locus:2129960; AT4G15310 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EJ13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EJ10 O49565 FB239_ARATH Putative F-box protein At4g21240 48408 Putative F-box protein At4g21240 locus:2127333; AT4G21240 F-box associated domain NA NA NA NA NA NA NA ENOG411EJ11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os02g0782432 protein B9F3L1 B9F3L1_ORYSJ Os02g0782432 OsJ_08622 OSNPB_020782432 ENOG411EJ1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EJ1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TIR NA NA NA NA NA NA NA ENOG411EJ1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RINT-1 / TIP-1 family NA NA NA NA NA NA NA ENOG411EJ1V T6C23.14 Q9FWZ4 Q9FWZ4_ARATH TRAF-like family protein (Uncharacterized protein F24J1.26) (Uncharacterized protein T6C23.14) 26769 TRAF-like family protein (Uncharacterized protein F24J1.26) (Uncharacterized protein T6C23.14) locus:2026745; AT1G69660 MATH domain NA NA NA NA NA NA NA ENOG411EJ1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cullin protein neddylation domain NA NA NA NA NA NA NA ENOG411EJ1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM) which serves as an aminopropyl donor (By similarity) NA NA NA NA NA NA NA ENOG411EJ1R Q3ED68,P0C7Q9 Y1295_ARATH,PPR56_ARATH Uncharacterized PKHD-type hydroxylase At1g22950 (EC 1.14.11.-),Pentatricopeptide repeat-containing protein At1g22960, mitochondrial 1.14.11.- 45751,82642 Uncharacterized PKHD-type hydroxylase At1g22950 (EC 1.14.11.-),Pentatricopeptide repeat-containing protein At1g22960, mitochondrial dioxygenase activity [GO:0051213]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2017774;,locus:2017754; AT1G22950,AT1G22960 P4Hc NA NA NA NA NA NA NA ENOG411EJ1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor family ligand binding region Os06g0190800 protein (Fragment) A0A0P0WTF1,A0A0P0WTE6 A0A0P0WTF1_ORYSJ,A0A0P0WTE6_ORYSJ Os06g0190800 OSNPB_060190800 ENOG411EJ1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endo-transglycosylase (XET) C-terminus NA NA NA NA NA NA NA ENOG411EJ1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EJ1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger CCCH domain-containing protein 20 (OsC3H20) Q0DVU4 C3H20_ORYSJ Os03g0112700 LOC_Os03g02160 ENOG411EJ1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os11g0244900 protein A0A0P0Y1J4 A0A0P0Y1J4_ORYSJ Os11g0244900 OSNPB_110244900 ENOG411EJ1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily NA NA NA NA NA NA NA ENOG411EJ1H Q9FWW2 Q9FWW2_ARATH T28K15.14 protein (Uncharacterized protein At1g12120) 54996 T28K15.14 protein (Uncharacterized protein At1g12120) locus:2201956; AT1G12120 Plant protein of unknown function (DUF863) NA NA NA NA NA NA NA ENOG411EJ1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative gypsy type transposon NA NA NA NA NA NA NA ENOG411EJ1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ccr4-Not transcription complex Os03g0102300 protein A0A0N7KGF0 A0A0N7KGF0_ORYSJ Os03g0102300 OSNPB_030102300 ENOG411EJ1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0115760 protein A0A0P0X1P6 A0A0P0X1P6_ORYSJ Os07g0115760 OSNPB_070115760 ENOG411EJ1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histidine kinase- DNA gyrase B- and HSP90-like ATPase NA NA NA NA NA NA NA ENOG411E1UB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MSP (Major sperm protein) domain Os02g0661900 protein A0A0P0VMM6,A0A0P0VMK0 A0A0P0VMM6_ORYSJ,A0A0P0VMK0_ORYSJ Os02g0661900 OSNPB_020661900 ENOG411DVXF HOL3,HOL2,HOL1 Q6AWU6,O80562,Q0WP12,F4IT14 HOL3_ARATH,HOL2_ARATH,HOL1_ARATH,F4IT14_ARATH Probable thiol methyltransferase 2 (EC 2.1.1.9) (Protein HARMLESS TO OZONE LAYER 3) (AtHOL3),Probable thiol methyltransferase 1 (EC 2.1.1.9) (Protein HARMLESS TO OZONE LAYER 2) (AtHOL2),Thiocyanate methyltransferase 1 (EC 2.1.1.n4) (Protein HARMLESS TO OZONE LAYER 1) (AtHOL1),HARMLESS TO OZONE LAYER 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19419967}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Increased sensitivity to thiocyanate in medium and lower methyl halide emissions. {ECO:0000269|PubMed:14561407, ECO:0000269|PubMed:19419967}. Susceptible to bacterial infection; Sensitive to potassium thiocyanate-T. Nakamura-2009 FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase. {ECO:0000269|Ref.4}.,FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens (By similarity). {ECO:0000250, ECO:0000269|Ref.5}.,FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage. {ECO:0000269|PubMed:19419967, ECO:0000269|Ref.8}. ARA:GQT-145-MONOMER;,ARA:GQT-2310-MONOMER;,ARA:GQT-743-MONOMER; 2.1.1.165;,2.1.1.165;2.1.1.9; 2.1.1.9,2.1.1.n4 25043,25126,27408,18503 Probable thiol methyltransferase 2 (EC 2.1.1.9) (Protein HARMLESS TO OZONE LAYER 3) (AtHOL3),Probable thiol methyltransferase 1 (EC 2.1.1.9) (Protein HARMLESS TO OZONE LAYER 2) (AtHOL2),Thiocyanate methyltransferase 1 (EC 2.1.1.n4) (Protein HARMLESS TO OZONE LAYER 1) (AtHOL1),HARMLESS TO OZONE LAYER 1 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; thiol S-methyltransferase activity [GO:0018708],thiol S-methyltransferase activity [GO:0018708],plasma membrane [GO:0005886]; thiol S-methyltransferase activity [GO:0018708]; defense response [GO:0006952]; glucosinolate catabolic process [GO:0019762],S-adenosylmethionine-dependent methyltransferase activity [GO:0008757] TISSUE SPECIFICITY: Expressed in shoots, leaves, stems, inflorescences, flowers and green siliques. {ECO:0000269|PubMed:14561407}. locus:2051824;,locus:2051784;,locus:2051728; AT2G43940,AT2G43920,AT2G43910 thiol methyltransferase Os06g0153900 protein (cDNA clone:006-301-H08, full insert sequence),Os03g0843800 protein (Putative methyl chloride transferase) (Thiopurine S-methyltransferase family protein, expressed),Os06g0153900 protein (Putative methyl chloride transferase) B7E650,Q75LD3,Q5VMN3 B7E650_ORYSJ,Q75LD3_ORYSJ,Q5VMN3_ORYSJ Os06g0153900 OsJ_20168 OSNPB_060153900,OSJNBa0032G11.10 Os03g0843800 LOC_Os03g62670 OsJ_13333 OSNPB_030843800,Os06g0153900 Os06g0153900 OSJNBa0085L11.5 OSNPB_060153900 ENOG411DVXG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os06g0475400 protein (Putative HGA1) (cDNA clone:J033093L19, full insert sequence) Q69Y34 Q69Y34_ORYSJ Os06g0475400 OsJ_21358 OSNPB_060475400 P0021H10.18 ENOG411DVXB VPS25 Q8VZC9 VPS25_ARATH Vacuolar protein sorting-associated protein 25 (AtVPS25) (ESCRT-II complex subunit VPS25) FUNCTION: Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex (By similarity). {ECO:0000250}. R-ATH-917729; 20682 Vacuolar protein sorting-associated protein 25 (AtVPS25) (ESCRT-II complex subunit VPS25) ESCRT II complex [GO:0000814]; protein homodimerization activity [GO:0042803]; structural molecule activity [GO:0005198]; protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328] locus:504955551; AT4G19003 Vacuolar protein sorting-associated protein Os01g0658500 protein Q5SMZ2,A0A0P0V6A0 Q5SMZ2_ORYSJ,A0A0P0V6A0_ORYSJ P0694A04.40-1 P0684E06.3-1 Os01g0658500 OSNPB_010658500,Os01g0658500 OSNPB_010658500 ENOG411DVXC COL7,COL6,COL16 Q9C9A9,Q8LG76,Q8RWD0 COL7_ARATH,COL6_ARATH,COL16_ARATH Zinc finger protein CONSTANS-LIKE 7,Zinc finger protein CONSTANS-LIKE 6,Zinc finger protein CONSTANS-LIKE 16 44018,46060,46932 Zinc finger protein CONSTANS-LIKE 7,Zinc finger protein CONSTANS-LIKE 6,Zinc finger protein CONSTANS-LIKE 16 nucleolus [GO:0005730]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; secondary shoot formation [GO:0010223]; shade avoidance [GO:0009641],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355],membrane [GO:0016020]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2031581;,locus:2201277;,locus:2031180; AT1G73870,AT1G68520,AT1G25440 Zinc finger protein CONSTANS-LIKE NA NA NA NA NA NA NA ENOG411DVXM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RPR NA NA NA NA NA NA NA ENOG411DVXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF547 Os03g0233800 protein (Ternary complex factor MIP1, putative, expressed) (cDNA clone:J023081G15, full insert sequence) Q10PH6 Q10PH6_ORYSJ Os03g0233800 LOC_Os03g13130 Os03g0233800 OSNPB_030233800 ENOG411E78R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0187800 protein) Q2QWP2 Q2QWP2_ORYSJ LOC_Os12g08700 Os12g0187800 OSNPB_120187800 ENOG411E78S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Exonuc_X-T NA NA NA NA NA NA NA ENOG411E78Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0621600 protein (cDNA clone:002-145-F12, full insert sequence) (cDNA clone:J023078O20, full insert sequence) Q6K9N7 Q6K9N7_ORYSJ Os02g0621600 Os02g0621600 OJ1234_B11.17 OSNPB_020621600 ENOG411E78A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0555450 protein A0A0N7KR89 A0A0N7KR89_ORYSJ Os09g0555450 OSNPB_090555450 ENOG411E78F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA copper transporter NA NA NA NA NA NA NA ENOG411E1FW Q9CAV7,F4K5T4 STKLJ_ARATH,STKLU_ARATH Probable transcription factor At3g04930 (Storekeeper-like protein At3g04930),Probable transcription factor At5g28040 (Storekeeper-like protein At5g28040) 49707,46906 Probable transcription factor At3g04930 (Storekeeper-like protein At3g04930),Probable transcription factor At5g28040 (Storekeeper-like protein At5g28040) regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2114815;,locus:2143764; AT3G04930,AT5G28040 transcription regulator Os01g0249900 protein (cDNA clone:J023149P13, full insert sequence) Q5NBE6 Q5NBE6_ORYSJ Os01g0249900 OSNPB_010249900 P0434D08.6 ENOG411E78G RPL39B,RPL39A; RPL39C Q8L8W6,P51424 RL392_ARATH,RL391_ARATH 60S ribosomal protein L39-2,60S ribosomal protein L39-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 6420,6416 60S ribosomal protein L39-2,60S ribosomal protein L39-1 cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2076527;,locus:2059541;locus:505006541; AT3G02190,AT2G25210AT4G31985; 60S ribosomal protein 60S ribosomal protein L39-2,60S ribosomal protein L39-1,Os02g0796900 protein (Fragment) P51426,Q6KAJ8,A0A0P0VQP9 RL392_ORYSJ,RL391_ORYSJ,A0A0P0VQP9_ORYSJ RPL39B Os02g0797200 LOC_Os02g55390 OJ1004_E04.30 OsJ_08727,RPL39A Os02g0797200 OJ1004_E04.27 OsJ_08725,Os02g0796900 OSNPB_020796900 ENOG411EKTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH-Ubiquinone/plastoquinone (complex I) various chains NA NA NA NA NA NA NA ENOG411EKTF MVA3.2 Q9FN84 Q9FN84_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g17670) (Uncharacterized protein MVA3.2) 33408 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g17670) (Uncharacterized protein MVA3.2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; hydrolase activity, acting on ester bonds [GO:0016788] locus:2175981; AT5G17670 PGAP1-like protein Os02g0129900 protein B9F297 B9F297_ORYSJ Os02g0129900 OsJ_05240 OSNPB_020129900 ENOG411EKTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor RFC1 C terminal domain NA NA NA NA NA NA NA ENOG411EKTY RFC1 Q9C587,A0A1P8BA43 RFC1_ARATH,A0A1P8BA43_ARATH Replication factor C subunit 1 (AtRFC1) (Activator 1 large subunit) (Activator 1 subunit 1),Replication factor C1 DISRUPTION PHENOTYPE: The rfc1-1 EMS mutants show reduced plant growth and organ size, and early flowering (PubMed:20639449). The rfc1-2 T-DNA mutants have normal vegetative growth, but have greatly reduced fertility due to a meiotic defect and produce short seed pods with very few seeds (PubMed:23144629). The rfc1-3 T-DNA mutant is embryonic lethal when homozygous (PubMed:23144629). {ECO:0000269|PubMed:17556804, ECO:0000269|PubMed:20639449, ECO:0000269|PubMed:22974522, ECO:0000269|PubMed:23144629}. Embryo defective-Z. Zhu-2007 FUNCTION: Plays a role as mediator of transcriptional gene silencing (TGS), DNA replication, DNA repair, hypersensitive response (HR) and telomere length regulation. Is required in meiosis for DNA double-strand break (DSB) repair during meiotic homologous recombination. May participate in the RAD51-mediated recombination intermediate repair process. Is important for lagging strand synthesis. Promotes meiotic recombination via a specific pathway for crossovers (COs) that involves the formation of double Holliday Junction (dHJ) intermediates. {ECO:0000269|PubMed:17556804, ECO:0000269|PubMed:20639449, ECO:0000269|PubMed:22974522, ECO:0000269|PubMed:23144629}. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-174411;R-ATH-5651801;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5696397;R-ATH-5696400;R-ATH-6782135;R-ATH-6782210;R-ATH-69091; 104378,100431 Replication factor C subunit 1 (AtRFC1) (Activator 1 large subunit) (Activator 1 subunit 1),Replication factor C1 DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA clamp loader activity [GO:0003689]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; regulation of chromatin silencing [GO:0031935]; regulation of histone H3-K9 methylation [GO:0051570]; reproduction [GO:0000003]; resolution of meiotic recombination intermediates [GO:0000712]; response to abscisic acid [GO:0009737],DNA replication factor C complex [GO:0005663]; ATP binding [GO:0005524]; DNA clamp loader activity [GO:0003689]; DNA repair [GO:0006281]; DNA replication [GO:0006260] TISSUE SPECIFICITY: Expressed at high levels in flowers and siliques, and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:20639449, ECO:0000269|PubMed:22974522}. locus:504956441; AT5G22010 replication factor C Os11g0572100 protein (Fragment) A0A0P0Y3K5,A0A0P0Y3R4 A0A0P0Y3K5_ORYSJ,A0A0P0Y3R4_ORYSJ Os11g0572100 OSNPB_110572100 ENOG411EKTZ Q9CAP6 Q9CAP6_ARATH Uncharacterized protein T5M16.21 (p-loop containing nucleoside triphosphate hydrolases superfamily protein) 128658 Uncharacterized protein T5M16.21 (p-loop containing nucleoside triphosphate hydrolases superfamily protein) nuclear chromatin [GO:0000790]; chromatin binding [GO:0003682]; hydrolase activity [GO:0016787]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281]; mitotic DNA replication checkpoint [GO:0033314] locus:2204705; AT1G77620 Inherit from NOG: ATPase family AAA domain containing 5 NA NA NA NA NA NA NA ENOG411EKTP PRFB3 F4J264 PRFB3_ARATH Peptide chain release factor PrfB3, chloroplastic (AtPrfB3) DISRUPTION PHENOTYPE: High chlorophyll fluorescence (hcf) phenotype and plant death at seedling stage when homozygous. {ECO:0000269|PubMed:21771930}. FUNCTION: Involved in the light- and stress-dependent regulation of stability of 3' processed petB transcripts, thus regulating cytochrome b6 accumulation, a rate-limiting step in photosynthetic electron transport. May be recruited to specifically protect petB transcripts against 3'-5' exonucleolytic attack by masking the 3' ends. Does not function as release factor. {ECO:0000269|PubMed:21771930}. 45969 Peptide chain release factor PrfB3, chloroplastic (AtPrfB3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mRNA 3'-UTR binding [GO:0003730]; sequence-specific DNA binding [GO:0043565]; translation release factor activity [GO:0003747]; chloroplast organization [GO:0009658]; regulation of growth [GO:0040008]; regulation of mRNA stability [GO:0043488] locus:2082563; AT3G57190 Peptide chain release factor Os05g0375600 protein A0A0P0WLM4 A0A0P0WLM4_ORYSJ Os05g0375600 OSNPB_050375600 ENOG411EKTQ PRFB1,HCF109 Q9LVY0,A0A1P8BGW0,F4K2X9 PRFB1_ARATH,A0A1P8BGW0_ARATH,F4K2X9_ARATH Peptide chain release factor PrfB1, chloroplastic (AtPrfB1) (AtPrfB) (Protein HIGH CHLOROPHYLL FLUORESCENCE 109),High chlorophyll fluorescent 109 DISRUPTION PHENOTYPE: High chlorophyll fluorescence phenotype (hcf) and severe lesions in thylakoid membrane complexes, predominantly in photosystem II. {ECO:0000269|PubMed:12468741}. FUNCTION: Directs the termination of translation in response to the peptide chain termination codon UGA. Required for the proper translation, stability and normal processing of UGA-containing polycistronic transcripts in chloroplasts. {ECO:0000269|PubMed:12468741}. 50977,43093,43192 Peptide chain release factor PrfB1, chloroplastic (AtPrfB1) (AtPrfB) (Protein HIGH CHLOROPHYLL FLUORESCENCE 109),High chlorophyll fluorescent 109 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; translation release factor activity, codon specific [GO:0016149]; plastid organization [GO:0009657]; RNA processing [GO:0006396]; translational termination [GO:0006415],translation release factor activity [GO:0003747] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:12468741}. locus:2158936; AT5G36170 peptide chain release factor Os07g0546600 protein (Putative translation releasing factor2) Q8GVY3 Q8GVY3_ORYSJ OJ1612_A04.112 Os07g0546600 OSNPB_070546600 ENOG411EKTT RIBF1 Q9FMW8 RIBF1_ARATH FAD synthetase 1, chloroplastic (EC 2.7.7.2) (AtRibF1) (FAD pyrophosphorylase 1) (FMN adenylyltransferase 1) (Flavin adenine dinucleotide synthase 1) FUNCTION: Catalyzes the adenylation of flavin mononucleotide (FMN) to form flavin adenine dinucleotide (FAD) coenzyme. {ECO:0000269|PubMed:18713732}. PATHWAY: Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1. ARA:GQT-2621-MONOMER; 2.7.7.2; 2.7.7.2 39210 FAD synthetase 1, chloroplastic (EC 2.7.7.2) (AtRibF1) (FAD pyrophosphorylase 1) (FMN adenylyltransferase 1) (Flavin adenine dinucleotide synthase 1) chloroplast [GO:0009507]; ATP binding [GO:0005524]; FMN adenylyltransferase activity [GO:0003919]; FAD biosynthetic process [GO:0006747]; riboflavin biosynthetic process [GO:0009231] locus:2166973; AT5G23330 FAD synthetase NA NA NA NA NA NA NA ENOG411EKTU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKT8 ABCA11,ABCA9 Q9FKF2,Q9FLT5 AB11A_ARATH,AB9A_ARATH ABC transporter A family member 11 (ABC transporter ABCA.11) (AtABCA11) (Putative ABC2 homolog 15),ABC transporter A family member 9 (ABC transporter ABCA.9) (AtABCA9) (ABC2 homolog 11) DISRUPTION PHENOTYPE: Reduced seed size with abnormal morphology and reduced triacylglycerol content. Retarded growth on medium lacking sucrose. {ECO:0000269|PubMed:23269834}. FUNCTION: Mediates the transport of acyl-CoAs and/or free fatty acids to the endoplasmic reticulum. Has no effect on the selectivity of fatty acid incorporation into triacylglycerol or further desaturation steps. {ECO:0000269|PubMed:23269834}. R-ATH-1369062;R-ATH-382556; 104707,105431 ABC transporter A family member 11 (ABC transporter ABCA.11) (AtABCA11) (Putative ABC2 homolog 15),ABC transporter A family member 9 (ABC transporter ABCA.9) (AtABCA9) (ABC2 homolog 11) integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; lipid transport [GO:0006869],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; fatty acid transporter activity [GO:0015245]; seed development [GO:0048316] DEVELOPMENTAL STAGE: Expressed during the middle and late stages of seed development. {ECO:0000269|PubMed:23269834}. TISSUE SPECIFICITY: Highly expressed in siliques. Detected in seedlings, rosette leaves, stems and flowers. {ECO:0000269|PubMed:23269834}. AT5G61690,AT5G61730 ABC transporter NA NA NA NA NA NA NA ENOG411EKT7 ABCI1 Q9C8T1 AB1I_ARATH ABC transporter I family member 1 (ABC transporter ABCI.1) (AtABCI1) (Cytochrome c biogenesis ATP-binding export protein ccmA-like) (MRP-related protein 3) (Putative non-intrinsic ABC protein 10) (EC 3.6.3.41) FUNCTION: Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system (By similarity). {ECO:0000250}. ARA:AT1G63270-MONOMER; 3.6.3.41 25976 ABC transporter I family member 1 (ABC transporter ABCI.1) (AtABCI1) (Cytochrome c biogenesis ATP-binding export protein ccmA-like) (MRP-related protein 3) (Putative non-intrinsic ABC protein 10) (EC 3.6.3.41) membrane [GO:0016020]; ATP binding [GO:0005524]; heme-transporting ATPase activity [GO:0015439]; protoheme IX ABC transporter activity [GO:0103115]; transporter activity [GO:0005215]; cytochrome complex assembly [GO:0017004]; transport [GO:0006810] locus:2038478; AT1G63270 ABC transporter I family member Os04g0627200 protein A0A0N7KJR2 A0A0N7KJR2_ORYSJ Os04g0627200 OSNPB_040627200 ENOG411EG5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EG5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: regulator of chromosome condensation NA NA NA NA NA NA NA ENOG411EG57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411EG55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0147000 protein (cDNA clone:J023041N20, full insert sequence) Q5VP44 Q5VP44_ORYSJ Os06g0147000 Os06g0147000 OSNPB_060147000 P0036F10.25 ENOG411EG54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: microtubule-associated protein RP EB family member NA NA NA NA NA NA NA ENOG411EJD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative gypsy type transposon NA NA NA NA NA NA NA ENOG411ECC6 OPT8 Q9FJD1 OPT8_ARATH Oligopeptide transporter 8 (AtOPT8) FUNCTION: May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. {ECO:0000250, ECO:0000269|PubMed:11788749}. 82079 Oligopeptide transporter 8 (AtOPT8) integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; oligopeptide transmembrane transporter activity [GO:0035673]; oligopeptide transporter activity [GO:0015198]; pollen sperm cell differentiation [GO:0048235]; protein transport [GO:0015031] locus:2168626; AT5G53520 OPT oligopeptide transporter protein NA NA NA NA NA NA NA ENOG411EJD3 F4JRC5 F4JRC5_ARATH Transmembrane protein FUNCTION: Endogenous secreted peptide that acts as elicitor of immune response and positive regulator of defense response. Amplifies the immune response triggered by flg22, the active epitope of bacterial flagellin. Acts as negative regulator of root growth. {ECO:0000269|PubMed:25188390}. 9032 Transmembrane protein apoplast [GO:0048046]; integral component of membrane [GO:0016021]; response to karrikin [GO:0080167] locus:2115159; AT4G37290 NA NA NA NA NA NA NA NA ENOG411ECCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411ECCF Q9LIG2,Q9SI06,A0A1I9LL69 RLK6_ARATH,Y5573_ARATH,A0A1I9LL69_ARATH Receptor-like protein kinase At3g21340 (EC 2.7.10.1) (EC 2.7.11.1) (Leucine-rich repeat receptor-like protein kinase At3g21340),Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g04300 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein FUNCTION: Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. {ECO:0000269|PubMed:19124768}. 2.7.10.1; 2.7.11.1,2.7.11.1 100195,99519,78290 Receptor-like protein kinase At3g21340 (EC 2.7.10.1) (EC 2.7.11.1) (Leucine-rich repeat receptor-like protein kinase At3g21340),Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g04300 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein tyrosine kinase activity [GO:0004714],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] locus:2089483;,locus:2059804; AT3G21340,AT2G04300 STYKc NA NA NA NA NA NA NA ENOG411ECCC LIP2 Q9M8S2 LIPG2_ARATH Receptor-like kinase LIP2 (EC 2.7.11.-) (Protein LOST IN POLLEN TUBE GUIDANCE 2) (AtLIP2) DISRUPTION PHENOTYPE: No visible phenotype. Lip1 and lip2 double mutants have a reduced male transmission. {ECO:0000269|PubMed:23684977}. FUNCTION: Involved in pollen tube guidance into micropyle. Participates in perception of the ovule-secreted peptide signal LURE1. {ECO:0000269|PubMed:23684977}. R-ATH-446652; 2.7.11.- 62402 Receptor-like kinase LIP2 (EC 2.7.11.-) (Protein LOST IN POLLEN TUBE GUIDANCE 2) (AtLIP2) plasma membrane [GO:0005886]; pollen tube tip [GO:0090404]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; pollen tube guidance [GO:0010183]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in mature pollen and in germinating pollen tubes. {ECO:0000269|PubMed:23684977}. locus:2075517; AT3G02810 STYKc NA NA NA NA NA NA NA ENOG411ECCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum Os08g0201700 protein A0A0P0XCX6 A0A0P0XCX6_ORYSJ Os08g0201700 OSNPB_080201700 ENOG411DT0M PURA Q96529 PURA_ARATH Adenylosuccinate synthetase, chloroplastic (AMPSase) (AdSS) (EC 6.3.4.4) (IMP--aspartate ligase) FUNCTION: Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP. PATHWAY: Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2. {ECO:0000255|HAMAP-Rule:MF_03125}. ARA:AT3G57610-MONOMER;MetaCyc:AT3G57610-MONOMER; R-ATH-73817; 6.3.4.4; 6.3.4.4 52964 Adenylosuccinate synthetase, chloroplastic (AMPSase) (AdSS) (EC 6.3.4.4) (IMP--aspartate ligase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; adenylosuccinate synthase activity [GO:0004019]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; 'de novo' AMP biosynthetic process [GO:0044208]; IMP metabolic process [GO:0046040]; response to cadmium ion [GO:0046686] locus:2076606; AT3G57610 Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP (By similarity) Adenylosuccinate synthetase 2, chloroplastic (AMPSase 2) (AdSS 2) (EC 6.3.4.4) (IMP--aspartate ligase 2),Adenylosuccinate synthetase 1, chloroplastic (AMPSase 1) (AdSS 1) (EC 6.3.4.4) (IMP--aspartate ligase 1) Q851S8,Q10R17 PURA2_ORYSJ,PURA1_ORYSJ PURA2 Os03g0699300 LOC_Os03g49220 OsJ_12227 OSJNBb0017F17.14,PURA1 Os03g0174500 LOC_Os03g07840 OsJ_09613 FUNCTION: Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (By similarity). {ECO:0000250}. ENOG411DT0N MPS1 F4KDF5 MPS1_ARATH Protein MULTIPOLAR SPINDLE 1 (Protein PUTATIVE RECOMBINATION INITIATION DEFECTS 2) (AtPRD2) DISRUPTION PHENOTYPE: Defective in early recombination processes leading to the absence of meiotic DNA double-strand break (DSB) formation (PubMed:19763177). Reduced silique elongation associated with fertility defects involving both male and female gametophyte abortion due to aberrant meiotic products (PubMed:19763177, PubMed:19500302). Produced multiple uneven spores aborted in later stages during anther development, due to abnormal chromosome segregation and unequal bipolar or multipolar spindles in meiocytes (PubMed:19500302). {ECO:0000269|PubMed:19500302, ECO:0000269|PubMed:19763177}. Defective in meiotic double strand break formation. Fewer chiasmata formed per cell compared to the wild type cells. Reduced male and female fertility-Z. Yang-2009 FUNCTION: Involved in meiotic spindle organization in meiocytes thus regulating chromosome segregation (PubMed:19500302). Required for formation of meiotic DNA double-strand breaks (DSBs) during early recombination processes (PubMed:19763177). {ECO:0000269|PubMed:19500302, ECO:0000269|PubMed:19763177}. 43661 Protein MULTIPOLAR SPINDLE 1 (Protein PUTATIVE RECOMBINATION INITIATION DEFECTS 2) (AtPRD2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; spindle [GO:0005819]; chiasma assembly [GO:0051026]; chromosome segregation [GO:0007059]; embryo sac development [GO:0009553]; male meiotic nuclear division [GO:0007140]; meiotic DNA double-strand break formation [GO:0042138]; meiotic spindle organization [GO:0000212]; plant-type sporogenesis [GO:0048236]; pollen development [GO:0009555] DEVELOPMENTAL STAGE: In anthers, predominantly detected in meiocytes and tapetal cells from stage 5 to early stage 7, with highest levels at stage 6, the time of male meiosis. In ovules, present in female meiocytes and embryo sacs. {ECO:0000269|PubMed:19500302}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, inflorescences and seedlings. Strongly expressed in meiocytes. {ECO:0000269|PubMed:19500302}. locus:2174363; AT5G57880 NA Os08g0555800 protein A0A0P0XI84 A0A0P0XI84_ORYSJ Os08g0555800 OSNPB_080555800 ENOG411DT0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein B3 domain-containing protein Os01g0234100 Q0JP99 Y1341_ORYSJ Os01g0234100 LOC_Os01g13300 P0702F03.19 ENOG411DT0I F4JR41 F4JR41_ARATH DNAse I-like superfamily protein 35502 DNAse I-like superfamily protein plasma membrane [GO:0005886] locus:2126654; AT4G30900 Inherit from COG: Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411DT0J CHR17,CHR11 F4JY24,Q8RWY3,F4JAV9,F4JY25 CHR17_ARATH,ISW2_ARATH,F4JAV9_ARATH,F4JY25_ARATH ISWI chromatin-remodeling complex ATPase CHR17 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 17),ISWI chromatin-remodeling complex ATPase CHR11 (EC 3.6.4.-) (ISW2-like) (Protein CHROMATIN REMODELING 11) (Sucrose nonfermenting protein 2 homolog),Chromatin-remodeling protein 11,Chromatin remodeling factor17 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants chr11-1 and chr17-1 are very small and display early flowering and sterility (PubMed:22694359). Premature decline of expression of HSA32, HSP18.2, HSP21, HSP22 and HSP101 after HS in the double mutant plants chr11-1 and chr17-1 (PubMed:27680998). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:27680998}.,DISRUPTION PHENOTYPE: Reduced heat stress (HS) memory. Premature decline of expression of HSA32, HSP18.2, HSP21, HSP22 and HSP101 after HS in the double mutant plants chr11-1 and chr17-1 (PubMed:27680998). No visible phenotype under normal growth conditions, but the double mutant plants chr11-1 and chr17-1 are very small and display early flowering and sterility (PubMed:22694359). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:27680998}. Female gametophyte defective-J. Vielle-Calzada-2005 FUNCTION: Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin (By similarity). Involved in the formation of nucleosome distribution patterns (PubMed:24606212). Required for the maintenance of the plant vegetative phase. In association with RLT1 or RLT2 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Necessary to acquire heat stress (HS) memory (PubMed:27680998). {ECO:0000250|UniProtKB:O60264, ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:24606212, ECO:0000269|PubMed:27680998}.,FUNCTION: Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin (By similarity). Involved in the formation of nucleosome distribution patterns (PubMed:24606212). Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte (PubMed:16286646). Required for the maintenance of the plant vegetative phase. In association with RLT1 or RLT2 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Necessary to acquire heat stress (HS) memory (PubMed:27680998). {ECO:0000250|UniProtKB:O60264, ECO:0000269|PubMed:16286646, ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:24606212, ECO:0000269|PubMed:27680998}. MISCELLANEOUS: Plants silencing CHR11 display reduced plant height and small cotyledonary embryos with limited cell expansion. Plants silencing CHR11 specifically at the onset of female gametogenesis (megagametogenesis) have defective female gametophytes arrested before the completion of the mitotic haploid nuclear divisions. {ECO:0000269|PubMed:16286646}. R-ATH-5693565; 3.6.4.- 123888,122558,122614,124162 ISWI chromatin-remodeling complex ATPase CHR17 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 17),ISWI chromatin-remodeling complex ATPase CHR11 (EC 3.6.4.-) (ISW2-like) (Protein CHROMATIN REMODELING 11) (Sucrose nonfermenting protein 2 homolog),Chromatin-remodeling protein 11,Chromatin remodeling factor17 nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; nucleosome binding [GO:0031491]; ATP-dependent chromatin remodeling [GO:0043044]; covalent chromatin modification [GO:0016569]; nucleosome positioning [GO:0016584]; positive regulation of cellular response to heat [GO:1900036],nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; nucleosome binding [GO:0031491]; ATP-dependent chromatin remodeling [GO:0043044]; covalent chromatin modification [GO:0016569]; flower development [GO:0009908]; megagametogenesis [GO:0009561]; nucleosome organization [GO:0034728]; positive regulation of cellular response to heat [GO:1900036]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510],cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; nucleosome binding [GO:0031491]; ATP-dependent chromatin remodeling [GO:0043044]; cell growth [GO:0016049]; embryo sac development [GO:0009553]; nucleosome positioning [GO:0016584]; vegetative to reproductive phase transition of meristem [GO:0010228],nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [GO:0016818]; nucleosome binding [GO:0031491]; ATP-dependent chromatin remodeling [GO:0043044]; nucleosome positioning [GO:0016584]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: In developing ovule, expressed in all cells of the young nucellus, including the functional megaspore. After the initiation of megagametogenesis, expressed in most cells of the ovule, including the integuments, the developing megagametophyte, and the funiculus. In mature ovules, strongly expressed in the cellularized megagametophyte. After double fertilization, expressed in the developing embryo and the free nuclear endosperm until seed maturity. Expressed in developing male gametophytes and mature pollen grains. {ECO:0000269|PubMed:16286646}. TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. locus:2081081;,locus:2182978; AT5G18620,AT3G06400 chromatin-remodeling complex ATPase Probable chromatin-remodeling complex ATPase chain (EC 3.6.4.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog),Chromatin-remodeling complex ATPase (EC 3.6.4.-) Q7G8Y3,Q5WN07 ISW2_ORYSJ,Q5WN07_ORYSJ Os01g0367900 LOC_Os01g27040 B1329D01.23 OsJ_01780 P0043B10.9 P0560B06.13 P0784G04.20,Os05g0150300 OsJ_17139 OSNPB_050150300 P0001A07.2 FUNCTION: Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin in vitro (By similarity). {ECO:0000250}. ENOG411DT0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class OSJNBa0063G07.11 protein (Os04g0330900 protein),Os07g0267400 protein (Fragment),Os04g0516225 protein,Os09g0564966 protein,Os10g0338966 protein,Os04g0645700 protein (Fragment),Os04g0213500 protein,Os06g0303150 protein,Os06g0631466 protein,Os02g0746850 protein,Os01g0173400 protein,Os09g0564933 protein,Os04g0307634 protein,Os04g0133425 protein,Os04g0307567 protein,Os06g0501100 protein,Os12g0107166 protein,Os01g0364424 protein,Os04g0516250 protein,Os12g0107033 protein,Os01g0364436 protein,Os08g0380350 protein,Os06g0302900 protein,Os12g0495587 protein,Os04g0133275 protein,Os03g0172933 protein,Os04g0516275 protein,Os04g0126150 protein,Os04g0126325 protein,Os11g0235825 protein,Os08g0380600 protein,Os06g0631507 protein,Os04g0146034 protein,Os11g0461132 protein,Os12g0490333 protein,Os04g0125975 protein,Os03g0367350 protein,Os04g0133350 protein,Os03g0173016 protein Q7XP40,A0A0P0X4H4,A0A0P0WCT8,A0A0P0XQX1,A0A0P0XT80,A0A0N7KJT5,A0A0P0W7P1,A0A0P0WVR1,A0A0P0WZA3,A0A0P0VPS2,A0A0P0UYW8,A0A0P0XQH2,A0A0P0W8C6,A0A0P0W6H0,A0A0P0W8U3,A0A0P0WXF1,A0A0P0Y631,A0A0P0V2H2,A0A0P0WCB8,A0A0P0Y5Z5,A0A0P0V326,A0A0P0XF60,A0A0P0WVZ0,A0A0P0YAP0,A0A0P0W6F4,A0A0P0VTL6,A0A0P0WCF7,A0A0P0W6E1,A0A0P0W6X7,A0A0P0Y0S2,A0A0P0XFG4,A0A0P0WYZ2,A0A0P0W6K9,A0A0N7KSW5,A0A0P0YAY3,A0A0P0W6S7,A0A0P0VXV0,A0A0P0W6V8,A0A0P0VTV3 Q7XP40_ORYSJ,A0A0P0X4H4_ORYSJ,A0A0P0WCT8_ORYSJ,A0A0P0XQX1_ORYSJ,A0A0P0XT80_ORYSJ,A0A0N7KJT5_ORYSJ,A0A0P0W7P1_ORYSJ,A0A0P0WVR1_ORYSJ,A0A0P0WZA3_ORYSJ,A0A0P0VPS2_ORYSJ,A0A0P0UYW8_ORYSJ,A0A0P0XQH2_ORYSJ,A0A0P0W8C6_ORYSJ,A0A0P0W6H0_ORYSJ,A0A0P0W8U3_ORYSJ,A0A0P0WXF1_ORYSJ,A0A0P0Y631_ORYSJ,A0A0P0V2H2_ORYSJ,A0A0P0WCB8_ORYSJ,A0A0P0Y5Z5_ORYSJ,A0A0P0V326_ORYSJ,A0A0P0XF60_ORYSJ,A0A0P0WVZ0_ORYSJ,A0A0P0YAP0_ORYSJ,A0A0P0W6F4_ORYSJ,A0A0P0VTL6_ORYSJ,A0A0P0WCF7_ORYSJ,A0A0P0W6E1_ORYSJ,A0A0P0W6X7_ORYSJ,A0A0P0Y0S2_ORYSJ,A0A0P0XFG4_ORYSJ,A0A0P0WYZ2_ORYSJ,A0A0P0W6K9_ORYSJ,A0A0N7KSW5_ORYSJ,A0A0P0YAY3_ORYSJ,A0A0P0W6S7_ORYSJ,A0A0P0VXV0_ORYSJ,A0A0P0W6V8_ORYSJ,A0A0P0VTV3_ORYSJ OSJNBa0063G07.11 Os04g0330900 OSNPB_040330900,Os07g0267400 OSNPB_070267400,Os04g0516225 OSNPB_040516225,Os09g0564966 OSNPB_090564966,Os10g0338966 OSNPB_100338966,Os04g0645700 OSNPB_040645700,Os04g0213500 OSNPB_040213500,Os06g0303150 OSNPB_060303150,Os06g0631466 OSNPB_060631466,Os02g0746850 OSNPB_020746850,Os01g0173400 OSNPB_010173400,Os09g0564933 OSNPB_090564933,Os04g0307634 OSNPB_040307634,Os04g0133425 OSNPB_040133425,Os04g0307567 OSNPB_040307567,Os06g0501100 OSNPB_060501100,Os12g0107166 OSNPB_120107166,Os01g0364424 OSNPB_010364424,Os04g0516250 OSNPB_040516250,Os12g0107033 OSNPB_120107033,Os01g0364436 OSNPB_010364436,Os08g0380350 OSNPB_080380350,Os06g0302900 OSNPB_060302900,Os12g0495587 OSNPB_120495587,Os04g0133275 OSNPB_040133275,Os03g0172933 OSNPB_030172933,Os04g0516275 OSNPB_040516275,Os04g0126150 OSNPB_040126150,Os04g0126325 OSNPB_040126325,Os11g0235825 OSNPB_110235825,Os08g0380600 OSNPB_080380600,Os06g0631507 OSNPB_060631507,Os04g0146034 OSNPB_040146034,Os11g0461132 OSNPB_110461132,Os12g0490333 OSNPB_120490333,Os04g0125975 OSNPB_040125975,Os03g0367350 OSNPB_030367350,Os04g0133350 OSNPB_040133350,Os03g0173016 OSNPB_030173016 ENOG411DT0D LRK10L-2.1,LRK10L-2.8,LRK10L-2.4,LRK10L-2.5,PR5K Q9FF31,Q3ECH2,F4HQ22,F4HQ20,Q9FF29,A0A1P8BA97,A0A1P8AQ12,A0A1P8AV87,F4I5D4 LRL21_ARATH,LRL28_ARATH,LRL24_ARATH,LRL25_ARATH,Q9FF29_ARATH,A0A1P8BA97_ARATH,A0A1P8AQ12_ARATH,A0A1P8AV87_ARATH,F4I5D4_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.1),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.8),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.4),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.5),PR5-like receptor kinase (Receptor serine/threonine kinase),PR5-like receptor kinase,Protein kinase superfamily protein,Receptor serine/threonine kinase FUNCTION: Possesses kinase activity in vitro. {ECO:0000269|PubMed:8637920}. ARA:AT5G38260-MONOMER;,ARA:AT1G67000-MONOMER;,ARA:AT5G38280-MONOMER; 2.7.11.1 71411,99410,69276,74237,73952,74993,73607,66504,87509 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.1),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.8),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.4),LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-2.5),PR5-like receptor kinase (Receptor serine/threonine kinase),PR5-like receptor kinase,Protein kinase superfamily protein,Receptor serine/threonine kinase integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; response to fungus [GO:0009620],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2176717;,locus:2019713;,locus:2204475;,locus:2204480;,locus:2176737;,locus:2020583; AT5G38260,AT1G67000,AT1G66920,AT1G66910,AT5G38280,AT1G70250 receptor-like protein kinase Os01g0690800 protein (Receptor serine/threonine kinase PR5K-like),Os01g0138400 protein (Putative receptor serine/threonine kinase PR5K),Os01g0138300 protein (Putative receptor serine/threonine kinase PR5K) (cDNA clone:J013116E02, full insert sequence),Os05g0550700 protein,Os01g0137950 protein (Fragment),Os01g0136900 protein,Os08g0335500 protein,Os01g0137250 protein,Os01g0137400 protein,Os01g0691050 protein Q5N7S4,Q5ZC55,Q5ZC57,A0A0P0WQI5,A0A0P0UXR3,A0A0P0UXQ9,A0A0P0XEL8,A0A0P0UXN2,A0A0P0UXS4,A0A0P0V6U7 Q5N7S4_ORYSJ,Q5ZC55_ORYSJ,Q5ZC57_ORYSJ,A0A0P0WQI5_ORYSJ,A0A0P0UXR3_ORYSJ,A0A0P0UXQ9_ORYSJ,A0A0P0XEL8_ORYSJ,A0A0P0UXN2_ORYSJ,A0A0P0UXS4_ORYSJ,A0A0P0V6U7_ORYSJ Os01g0690800 OSNPB_010690800 P0034C09.10,Os01g0138400 Os01g0138400 OSNPB_010138400 P0443D08.39,P0443D08.38-1 Os01g0138300 OsJ_00299 OSNPB_010138300,Os05g0550700 OSNPB_050550700,Os01g0137950 OSNPB_010137950,Os01g0136900 OSNPB_010136900,Os08g0335500 OSNPB_080335500,Os01g0137250 OSNPB_010137250,Os01g0137400 OSNPB_010137400,Os01g0691050 OSNPB_010691050 ENOG411DT0E CIPK9 Q9MAM1 CIPK9_ARATH CBL-interacting serine/threonine-protein kinase 9 (EC 2.7.11.1) (SNF1-related kinase 3.12) (SOS2-like protein kinase PKS6) hypersensitive to low potassium media FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. Involved in K(+) homeostasis under low-K(+) stress. {ECO:0000269|PubMed:23109687}. 2.7.11.1 50505 CBL-interacting serine/threonine-protein kinase 9 (EC 2.7.11.1) (SNF1-related kinase 3.12) (SOS2-like protein kinase PKS6) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cellular response to potassium ion starvation [GO:0051365]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; potassium ion homeostasis [GO:0055075]; regulation of potassium ion transport [GO:0043266]; response to cold [GO:0009409]; response to mannitol [GO:0010555]; response to salt stress [GO:0009651]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed at low levels in roots and shoots. Detected in root vascular bundles and in the leaf vascular tissue and hydathode, but not in root tips. {ECO:0000269|PubMed:11402167, ECO:0000269|PubMed:23109687}. locus:2035367; AT1G01140 Cbl-interacting protein kinase CBL-interacting protein kinase 9 (EC 2.7.11.1) (OsCIPK09),Non-specific serine/threonine protein kinase (EC 2.7.11.1) Q10SC8,A0A0P0VSJ7 CIPK9_ORYSJ,A0A0P0VSJ7_ORYSJ CIPK9 Os03g0126800 LOC_Os03g03510 OJ1015F07.8 OsJ_008917,Os03g0126800 OSNPB_030126800 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DT0F KIN7B Q8LNZ2 KN7B_ARATH Kinesin-like protein KIN-7B (NPK1-activating kinesin-2) (AtNACK2) (Protein STUD) (Protein TETRASPORE) DISRUPTION PHENOTYPE: Enlarged pollen grains containing four vegetative nuclei and up to eight sperm cells. Short siliques with low fertility. {ECO:0000269|PubMed:12694597, ECO:0000269|PubMed:15569152, ECO:0000269|PubMed:21575092, ECO:0000269|PubMed:9217006, ECO:0000269|PubMed:9224679}. Reduced fertility due to defects in meiosis; Large pollen-H. Dickinson-2003 FUNCTION: Probable plus end-directed motor protein that functions in the NACK-PQR (ANP3-MKK6-MPK4) MAP kinase signaling pathway, which is essential for somatic cell cytokinesis, especially for the cell-plate formation and its expansion. May regulate the activity and the localization of ANP3, probably by association through the non-catalytic region of the kinase. Functionally redundant with NACK1 and essential to promote the progression of cytokinesis and for cellularization (formation of the cell plate) during microgametogenesis and megagametogenesis. {ECO:0000269|PubMed:12694597, ECO:0000269|PubMed:15569152, ECO:0000269|PubMed:19825582, ECO:0000269|PubMed:20802223, ECO:0000269|PubMed:21575092, ECO:0000269|PubMed:9217006, ECO:0000269|PubMed:9224679}. ARA:GQT-2002-MONOMER; 106521 Kinesin-like protein KIN-7B (NPK1-activating kinesin-2) (AtNACK2) (Protein STUD) (Protein TETRASPORE) kinesin complex [GO:0005871]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; cytokinesis by cell plate formation [GO:0000911]; embryo sac cellularization [GO:0009558]; gametophyte development [GO:0048229]; male meiosis cytokinesis [GO:0007112]; microtubule-based movement [GO:0007018]; pollen development [GO:0009555]; radial microtubular system formation [GO:0010245] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, pollen mother cells and embryos. {ECO:0000269|PubMed:15569152}. locus:2084701; AT3G43210 Domain of unknown function (DUF3490) NA NA NA NA NA NA NA ENOG411DT0G EMB3147 Q8RU07,F4IMR0 Q8RU07_ARATH,F4IMR0_ARATH EMBRYO DEFECTIVE 3147 (Putative malonyl-CoA) (Putative malonyl-CoA:Acyl carrier protein transacylase),EMBRYO DEFECTIVE 3147 Embryo defective; Preglobular-D. Meinke-2011 ARA:AT2G30200-MONOMER; R-ATH-77289; 41523,38981 EMBRYO DEFECTIVE 3147 (Putative malonyl-CoA) (Putative malonyl-CoA:Acyl carrier protein transacylase),EMBRYO DEFECTIVE 3147 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; [acyl-carrier-protein] S-malonyltransferase activity [GO:0004314]; fatty acid biosynthetic process [GO:0006633],catalytic activity [GO:0003824]; metabolic process [GO:0008152] locus:2060884; AT2G30200 carrier protein transacylase Malonyl CoA-acyl carrier protein transacylase containing protein, expressed (Os03g0297400 protein) (cDNA clone:001-027-H08, full insert sequence) (cDNA clone:006-305-H10, full insert sequence) (cDNA clone:J033051G22, full insert sequence) Q10MS3 Q10MS3_ORYSJ Os03g0297400 LOC_Os03g18590 Os03g0297400 OSNPB_030297400 ENOG411DT0A F4J4G3,A0A1I9LP98,F4J4G2 F4J4G3_ARATH,A0A1I9LP98_ARATH,F4J4G2_ARATH PAP/OAS1 substrate-binding domain superfamily 84740,91753,93302 PAP/OAS1 substrate-binding domain superfamily mRNA binding [GO:0003729] locus:2081885; AT3G51620 Inherit from KOG: PAP associated domain containing Os11g0114700 protein (Fragment) A0A0P0XY33 A0A0P0XY33_ORYSJ Os11g0114700 OSNPB_110114700 ENOG411DT0B ABCG10,ABCG5 Q9MAH4,Q9SIT6 AB10G_ARATH,AB5G_ARATH ABC transporter G family member 10 (ABC transporter ABCG.10) (AtABCG10) (Probable white-brown complex homolog protein 10) (AtWBC10),ABC transporter G family member 5 (ABC transporter ABCG.5) (AtABCG5) (White-brown complex homolog protein 5) (AtWBC5) R-ATH-1369062; 66204,73314 ABC transporter G family member 10 (ABC transporter ABCG.10) (AtABCG10) (Probable white-brown complex homolog protein 10) (AtWBC10),ABC transporter G family member 5 (ABC transporter ABCG.5) (AtABCG5) (White-brown complex homolog protein 5) (AtWBC5) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2009640;,locus:2054142; AT1G53270,AT2G13610 ABC transporter G family member ABC transporter-like (Os01g0615500 protein),Os02g0630100 protein (Fragment),Os04g0183301 protein,Os04g0693300 protein (Fragment) Q9FTG6,A0A0P0VM04,A0A0P0W765,A0A0P0WH32 Q9FTG6_ORYSJ,A0A0P0VM04_ORYSJ,A0A0P0W765_ORYSJ,A0A0P0WH32_ORYSJ Os01g0615500 OsJ_02607 OSNPB_010615500 P0410E01.51,Os02g0630100 OSNPB_020630100,Os04g0183301 OSNPB_040183301,Os04g0693300 OSNPB_040693300 ENOG411DT0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0113400 protein Q6YXU4 Q6YXU4_ORYSJ Os08g0113400 Os08g0113400 OSNPB_080113400 P0427G12.2 P0498H04.32 ENOG411DT0X CDI Q9XIP8,A0A1P8AR70 CDI_ARATH,A0A1P8AR70_ARATH Protein CDI (Protein CADMIUM INDUCED),Nucleotide-diphospho-sugar transferases superfamily protein DISRUPTION PHENOTYPE: Impaired pollen germination and pollen tube growth thus leading to disrupted male transmission. {ECO:0000269|PubMed:22569258}. FUNCTION: Probable nucleotide-diphospho-sugar transferase required for pollen germination and tube growth. {ECO:0000269|PubMed:22569258}. 30216,32420 Protein CDI (Protein CADMIUM INDUCED),Nucleotide-diphospho-sugar transferases superfamily protein cytosol [GO:0005829]; transferase activity [GO:0016740]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; single fertilization [GO:0007338],transferase activity [GO:0016740] TISSUE SPECIFICITY: Mostly expressed in pollen grains and pollen tubes, and, at low levels, in seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:22569258}. locus:2010776; AT1G64980 NA Os07g0413800 protein (cDNA clone:006-203-D05, full insert sequence) (cDNA clone:006-308-G06, full insert sequence),Os07g0413800 protein,Expressed protein (Os10g0516400 protein) (cDNA clone:J033135F01, full insert sequence) Q8H367,B9FWT3,Q7XCT4 Q8H367_ORYSJ,B9FWT3_ORYSJ,Q7XCT4_ORYSJ Os07g0413800 Os07g0413800 OSJNBa0077F02.114 OSNPB_070413800,Os07g0413800 OsJ_23952 OSNPB_070413800,LOC_Os10g37230 Os10g0516400 OsJ_32160 OSJNBa0076F20.4 OSNPB_100516400 ENOG411DT0Y LOX5,LOX1 Q9LUW0,Q06327 LOX5_ARATH,LOX1_ARATH Linoleate 9S-lipoxygenase 5, chloroplastic (EC 1.13.11.58) (Lipoxygenase 5) (AtLOX5),Linoleate 9S-lipoxygenase 1 (EC 1.13.11.58) (Lipoxygenase 1) (AtLOX1) DISRUPTION PHENOTYPE: Increment in the number of lateral roots, and moderate increase in the length of the primary root. {ECO:0000269|PubMed:17369372}. developed more emergent (stage VIII) and lateral roots at 10 d. has a moderate increase in the length of the primary root. Slightly longer primary root; Increased lateral root number-C. Castresana-2007,Increased lateral root number-C. Castresana-2007 FUNCTION: 9S-lipoxygenase that can use linoleic acid or linolenic acid as substrates. Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Function as regulators of root development by controlling the emergence of lateral roots. {ECO:0000269|PubMed:17369372, ECO:0000269|PubMed:18949503}. PATHWAY: Lipid metabolism; oxylipin biosynthesis. {ECO:0000255|PROSITE-ProRule:PRU00726}. R-ATH-2142691;R-ATH-2142696;R-ATH-2142700;R-ATH-2142712;R-ATH-2142770;R-ATH-6798695; 1.13.11.58; 1.13.11.58 101060,98045 Linoleate 9S-lipoxygenase 5, chloroplastic (EC 1.13.11.58) (Lipoxygenase 5) (AtLOX5),Linoleate 9S-lipoxygenase 1 (EC 1.13.11.58) (Lipoxygenase 1) (AtLOX1) chloroplast [GO:0009507]; linoleate 9S-lipoxygenase activity [GO:1990136]; metal ion binding [GO:0046872]; lateral root formation [GO:0010311]; lipid oxidation [GO:0034440]; negative regulation of defense response to insect [GO:1900366]; oxylipin biosynthetic process [GO:0031408]; root development [GO:0048364],plastid [GO:0009536]; linoleate 9S-lipoxygenase activity [GO:1990136]; metal ion binding [GO:0046872]; lateral root formation [GO:0010311]; lipid oxidation [GO:0034440]; oxylipin biosynthetic process [GO:0031408]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; root development [GO:0048364] DEVELOPMENTAL STAGE: First observed in lateral root primordia (LRP), from the first pericycle divisions. Disappears before root emergence. {ECO:0000269|PubMed:17369372}.,DEVELOPMENTAL STAGE: Transiently expressed during germination, within 1 day after imbibition, especially in the epidermis and the aleurone layer. Later present in the epidermis of the radicle and the adaxial side of the cotyledons. In roots, confined to the pericycle cells and in the lateral root primordia (LRP), and declined at the time of lateral root emergence. Expression is greatly increased in leaves during leaf senescence. {ECO:0000269|PubMed:11891244, ECO:0000269|PubMed:12232208, ECO:0000269|PubMed:17369372}. TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:17369372}.,TISSUE SPECIFICITY: Seedlings, roots, leaves, and flowers (at protein level). {ECO:0000269|PubMed:12232208, ECO:0000269|PubMed:17369372, ECO:0000269|PubMed:7506426, ECO:0000269|Ref.7}. locus:2087837;,locus:2011030; AT3G22400,AT1G55020 Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development pest resistance and senescence or responses to wounding (By similarity) Putative linoleate 9S-lipoxygenase 3 (EC 1.13.11.58) (Lipoxygenase 3),Linoleate 9S-lipoxygenase 1 (EC 1.13.11.58) (9-lipoxygenase) (Lipoxygenase 1) (r9-LOX1),Linoleate 9S-lipoxygenase 2 (EC 1.13.11.58) (Lipoxygenase 2) (Lipoxygenase L-2),Probable linoleate 9S-lipoxygenase 4 (EC 1.13.11.58) (Lipoxygenase 4),LOX4 (Os03g0700400 protein) (Fragment),Lipoxygenase-like (Os06g0135460 protein),Lipoxygenase (EC 1.13.11.-) (Fragment) Q7G794,Q76I22,P29250,Q53RB0,C0L6K1,Q5VNU7,A0A0P0W1T3,A0A0P0W2N8,A0A0N7KHW1 LOX3_ORYSJ,LOX1_ORYSJ,LOX2_ORYSJ,LOX4_ORYSJ,C0L6K1_ORYSJ,Q5VNU7_ORYSJ,A0A0P0W1T3_ORYSJ,A0A0P0W2N8_ORYSJ,A0A0N7KHW1_ORYSJ Os03g0700400 LOC_Os03g49350 OSJNBb0017F17.2,Os03g0699700 LOC_Os03g49260 OSJNBb0017F17.10,LOX1.1 Os03g0738600 LOC_Os03g52860 OsJ_12500 OSJNBa0057G07.15,Os03g0700700 LOC_Os03g49380 OsJ_12241,Os03g0700400 OSNPB_030700400,Os06g0135460 OSNPB_060135460 P0001H02.23 P0548D03.8,Os03g0700700 OSNPB_030700700 FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure (By similarity). {ECO:0000250}.,FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. This lipoxygenase introduces molecular oxygen exclusively into the C-9 position of linoleic and linolenic. {ECO:0000269|PubMed:14634153}.,FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. {ECO:0000269|PubMed:1597177}.,FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. {ECO:0000256|RuleBase:RU003975}. ENOG411DT0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Holliday junction DNA helicase ruvB N-terminus Os05g0584600 protein,Os05g0584600 protein (Fragment) Q6I591,A0A0P0WQV4 Q6I591_ORYSJ,A0A0P0WQV4_ORYSJ Os05g0584600 OSJNBa0009C07.5 OSNPB_050584600,Os05g0584600 OSNPB_050584600 ENOG411DT0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os07g0222700 protein A0A0P0X3S7 A0A0P0X3S7_ORYSJ Os07g0222700 OSNPB_070222700 ENOG411DT0U Q8W3M4 Y4744_ARATH Uncharacterized protein At4g06744 44619 Uncharacterized protein At4g06744 extracellular region [GO:0005576] locus:1005716458; AT4G06744 NA NA NA NA NA NA NA NA ENOG411DT0V WHY3,WHY1 Q66GR6,Q9M9S3 WHY3_ARATH,WHY1_ARATH Single-stranded DNA-binding protein WHY3, chloroplastic (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 11) (Protein WHIRLY 3) (AtWHY3),Single-stranded DNA-binding protein WHY1, chloroplastic (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 1) (Protein WHIRLY 1) (AtWHY1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19666500}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants present a progressive lengthening of telomeric repeats. {ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500}. FUNCTION: Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}.,FUNCTION: Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. 29728,29058 Single-stranded DNA-binding protein WHY3, chloroplastic (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 11) (Protein WHIRLY 3) (AtWHY3),Single-stranded DNA-binding protein WHY1, chloroplastic (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 1) (Protein WHIRLY 1) (AtWHY1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; single-stranded DNA binding [GO:0003697]; defense response [GO:0006952]; DNA repair [GO:0006281]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chloroplast [GO:0009507]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; single-stranded DNA binding [GO:0003697]; telomeric DNA binding [GO:0042162]; defense response [GO:0006952]; DNA repair [GO:0006281]; negative regulation of telomere maintenance via telomerase [GO:0032211]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2058822;,locus:2012542; AT2G02740,AT1G14410 Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts maintains plastid genome stability by preventing break-induced and short homology- dependent illegitimate recombinations. In Os06g0145800 protein (Putative DNA-binding protein p24) Q5VP52 Q5VP52_ORYSJ Os06g0145800 OsJ_20114 OSJNBa0007O20.30 OSNPB_060145800 P0036F10.13 ENOG411DT0W T15C9_70 Q9M2V9,A8MQR3 Q9M2V9_ARATH,A8MQR3_ARATH At3g55070 (LisH/CRA/RING-U-box domains-containing protein) (Uncharacterized protein T15C9_70),LisH/CRA/RING-U-box domains-containing protein 47842,37163 At3g55070 (LisH/CRA/RING-U-box domains-containing protein) (Uncharacterized protein T15C9_70),LisH/CRA/RING-U-box domains-containing protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; GID complex [GO:0034657]; nucleus [GO:0005634]; negative regulation of gluconeogenesis [GO:0045721]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],negative regulation of gluconeogenesis [GO:0045721] locus:2097248; AT3G55070 macrophage erythroblast Os05g0160100 protein (cDNA clone:J033044H19, full insert sequence) Q6ATC3 Q6ATC3_ORYSJ Os05g0160100 Os05g0160100 OsJ_17208 OSJNBa0017J22.13 OSJNBa0034O12.5 OSNPB_050160100 ENOG411DT0P T17J13.180,PTI1-4 O80719,A0A1P8APV1,Q9LUT0,Q9ZW72,Q9M1Q2,Q9SX57,F4HWU0,A0A1P8AZ55,F4IQ85,A0A1I9LNW0,F4IK66 Y2706_ARATH,A0A1P8APV1_ARATH,Q9LUT0_ARATH,Q9ZW72_ARATH,Q9M1Q2_ARATH,Q9SX57_ARATH,F4HWU0_ARATH,A0A1P8AZ55_ARATH,F4IQ85_ARATH,A0A1I9LNW0_ARATH,F4IK66_ARATH Probable receptor-like protein kinase At2g47060 (EC 2.7.11.1),Protein kinase superfamily protein,Protein kinase superfamily protein (Serine/threonine protein kinase-like protein) (Uncharacterized protein At3g17410),Protein kinase superfamily protein (Uncharacterized protein At2g43230) (Uncharacterized protein At2g43230; F14B2.17),At3g62220 (Protein kinase superfamily protein) (Serine/threonine protein kinase-like protein),F11A17.22 protein (Protein kinase superfamily protein) (Serine/threonine protein kinase) R-ATH-446652; 2.7.11.1 39931,33912,39562,45366,38994,40172,39589,27059,49274,29236,35843 Probable receptor-like protein kinase At2g47060 (EC 2.7.11.1),Protein kinase superfamily protein,Protein kinase superfamily protein (Serine/threonine protein kinase-like protein) (Uncharacterized protein At3g17410),Protein kinase superfamily protein (Uncharacterized protein At2g43230) (Uncharacterized protein At2g43230; F14B2.17),At3g62220 (Protein kinase superfamily protein) (Serine/threonine protein kinase-like protein),F11A17.22 protein (Protein kinase superfamily protein) (Serine/threonine protein kinase) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468]; response to oxidative stress [GO:0006979],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2041339;,locus:2088990;,locus:2098083;,locus:2023752;,locus:2023767;,locus:2041071; AT2G47060,AT3G17410,AT2G43230,AT3G62220,AT1G48220,AT1G48210 serine threonine protein kinase Os01g0899000 protein (cDNA clone:J033101F17, full insert sequence),Os03g0844100 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J013094N20, full insert sequence),Os05g0135800 protein (Putative Pto kinase interactor 1) (cDNA clone:001-044-B08, full insert sequence),Os09g0513600 protein Q5N854,Q75LD0,Q75L45,A0A0P0XPP4 Q5N854_ORYSJ,Q75LD0_ORYSJ,Q75L45_ORYSJ,A0A0P0XPP4_ORYSJ Os01g0899000 OsJ_04421 OSNPB_010899000 P0506A10.23,OSJNBa0032G11.13 LOC_Os03g62700 Os03g0844100 OsJ_13337 OSNPB_030844100,Os05g0135800 Os05g0135800 OJ1127_B08.1 OsJ_17030 OSNPB_050135800 P0519E07.15,Os09g0513600 OSNPB_090513600 ENOG411DT0Q YDA,ANP1,ANP2,ANP3,NP1 Q9CAD5,O22040,Q9FZ36,O22042,A0A1P8AWJ5,F4IT19,A0A1P8B054 YODA_ARATH,ANP1_ARATH,M3K2_ARATH,M3K3_ARATH,A0A1P8AWJ5_ARATH,F4IT19_ARATH,A0A1P8B054_ARATH Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase),Mitogen-activated protein kinase kinase kinase ANP1 (EC 2.7.11.25) (Arabidopsis NPK1-related kinase 1),Mitogen-activated protein kinase kinase kinase 2 (EC 2.7.11.25) (Arabidopsis NPK1-related protein kinase 2),Mitogen-activated protein kinase kinase kinase 3 (EC 2.7.11.25) (Arabidopsis NPK1-related protein kinase 3),NPK1-related protein kinase 1,Protein kinase superfamily protein DISRUPTION PHENOTYPE: Severely dwarf plants that rarely survive on soil, small rosettes, compact leaves, extremely compressed shoots, and short, sterile flowers. No proper elongation of the zygote and differentiation of the extra-embryonic suspensor. Excess of stomata in leaves. {ECO:0000269|PubMed:14718171, ECO:0000269|PubMed:15178800}. Delayed growthshort roots multiply branched root hairs.Radially expanded root and hypocotyl cells.Aberrant microtuble organization and resistance to oryzalin. Embryo and seedling defective; Cotyledon-W. Lukowitz-2004,Short hypocotyl-M. Sussman-2002 FUNCTION: Functions in a MAP kinase cascade that acts as a molecular switch to regulate the first cell fate decisions in the zygote and the early embryo. Promotes elongation of the zygote and development of its basal daughter cell into the extra-embryonic suspensor. In stomatal development, acts downstream of the LRR receptor TMM, but upstream of the MKK4/MKK5-MPK3/MPK6 module to regulate stomatal cell fate before the guard mother cell (GMC) is specified. Plays a central role in both guard cell identity and pattern formation. This MAPK cascade also functions downstream of the ER receptor in regulating coordinated local cell proliferation, which shapes the morphology of plant organs. Upon brassinosteroid signaling, is inhibited by phosphorylation of its auto-inhibitory N-terminal domain by the GSK3-like kinase ASK7. {ECO:0000269|PubMed:14718171, ECO:0000269|PubMed:15178800, ECO:0000269|PubMed:17259259, ECO:0000269|PubMed:19286558, ECO:0000269|PubMed:22307275, ECO:0000269|PubMed:23263767}.,FUNCTION: May be involved in an oxidative stress-mediated signaling cascade that phosphorylates downstream MAP kinases MPK3 and MPK6. May suppress auxin signaling that promotes cell cycle. Functionally redundant to ANP2 and ANP3 in the positive regulation of cytokinesis. {ECO:0000269|PubMed:10717008, ECO:0000269|PubMed:12034900}.,FUNCTION: Involved in cortical microtubules organization and stabilization by regulating the phosphorylation state of microtubule-associated proteins such as MAP65-1. {ECO:0000269|PubMed:20215588}. MISCELLANEOUS: N-terminal deletions of YDA results in gain-of-function alleles with phenotypes (no stomata and exaggerated suspensor growth) opposite to loss-of-function phenotypes. {ECO:0000305|PubMed:14718171}.,MISCELLANEOUS: The protein kinase activity of isoform 1S is higher than that of isoform 1L. 2.7.11.25 95935,73470,71849,71654,67978,24670,16718 Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase),Mitogen-activated protein kinase kinase kinase ANP1 (EC 2.7.11.25) (Arabidopsis NPK1-related kinase 1),Mitogen-activated protein kinase kinase kinase 2 (EC 2.7.11.25) (Arabidopsis NPK1-related protein kinase 2),Mitogen-activated protein kinase kinase kinase 3 (EC 2.7.11.25) (Arabidopsis NPK1-related protein kinase 3),NPK1-related protein kinase 1,Protein kinase superfamily protein cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; inflorescence development [GO:0010229]; regulation of growth [GO:0040008]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stomatal complex morphogenesis [GO:0010103]; stress-activated protein kinase signaling cascade [GO:0031098]; suspensor development [GO:0010098],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; protein autophosphorylation [GO:0046777]; regulation of mitotic cell cycle [GO:0007346]; response to oxidative stress [GO:0006979]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; microtubule [GO:0005874]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; cortical microtubule organization [GO:0043622]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],apoplast [GO:0048046]; cytoplasm [GO:0005737]; microtubule [GO:0005874]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; cortical microtubule organization [GO:0043622]; protein autophosphorylation [GO:0046777]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in roots, leaves, guard cells, stems, flowers and siliques. {ECO:0000269|PubMed:14718171, ECO:0000269|PubMed:15178800}.,TISSUE SPECIFICITY: Expressed in roots, inflorescence stems, flower buds and flowers. Low amount in rosette and cauline leaves. {ECO:0000269|PubMed:9263451}.,TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:9263451}. locus:2026674;,locus:2035989;,locus:2080394;,locus:2051804; AT1G63700,AT1G09000,AT1G54960,AT3G06030,AT2G43930 Mitogen-activated protein kinase kinase kinase OSJNBa0084K11.3 protein (Os04g0559800 protein),Os02g0666300 protein (Putative MAP3K alpha 1 protein kinase) (cDNA clone:J033000A12, full insert sequence) Q7XUR1,Q6ESH1 Q7XUR1_ORYSJ,Q6ESH1_ORYSJ Os04g0559800 Os04g0559800 OsJ_15762 OSJNBa0084K11.3 OSNPB_040559800,Os02g0666300 OJ1486_E07.11 OsJ_07851 OSNPB_020666300 P0461B08.26 ENOG411DT0R Q9C6K3 Q9C6K3_ARATH Duplicated homeodomain-like superfamily protein (GT-like trihelix DNA-binding protein, putative) 67879 Duplicated homeodomain-like superfamily protein (GT-like trihelix DNA-binding protein, putative) sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; glucosinolate metabolic process [GO:0019760]; mucilage biosynthetic process [GO:0010192]; regulation of transcription, DNA-templated [GO:0006355] locus:2036267; AT1G76880 trihelix transcription factor GT-2-like Os10g0516500 protein (Fragment),Os02g0648300 protein Q0IWD7,A0A0P0VMM0 Q0IWD7_ORYSJ,A0A0P0VMM0_ORYSJ Os10g0516500 Os10g0516500 OSNPB_100516500,Os02g0648300 OSNPB_020648300 ENOG411DT0S FAP3 Q9C8L2 FAP3_ARATH Fatty-acid-binding protein 3, chloroplastic (AtFAP3) (Chalcone-flavanone isomerase family protein 3) DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:22622584}. FUNCTION: Fatty-acid-binding protein. Interacts with most fatty acids tested and has maximal relative affinity for C16:0. 30729 Fatty-acid-binding protein 3, chloroplastic (AtFAP3) (Chalcone-flavanone isomerase family protein 3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chalcone isomerase activity [GO:0045430]; fatty acid binding [GO:0005504]; fatty acid metabolic process [GO:0006631]; flavonoid biosynthetic process [GO:0009813] TISSUE SPECIFICITY: Expressed in developing cotyledons, young seedlings, roots, seeds, embryos, macrospores, preanthesis and tapetum. Restricted to developing and reproductive tissues. {ECO:0000269|PubMed:22622584}. locus:2024877; AT1G53520 isomerase Chalcone-flavonone isomerase family protein Q6EQW2 Q6EQW2_ORYSJ Os02g0320300 OSJNBa0086N11.26 OSNPB_020320300 ENOG411DT08 OVA9 Q8W4F3,A0A1P8APZ3,F4K2L4,F4ICG2 SYQ_ARATH,A0A1P8APZ3_ARATH,F4K2L4_ARATH,F4ICG2_ARATH Glutamine--tRNA ligase, cytoplasmic (EC 6.1.1.18) (Glutaminyl-tRNA synthetase) (GlnRS) (Protein OVULE ABORTION 9),Glutamine-tRNA ligase/glutaminyl-tRNA protein,Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein,Glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterozygous plants 39% of ovules are aborted compared to 6% for wild type siblings. Complete female gametophyte defective; Male gametophyte defective-D. Meinke-2005 ARA:AT1G25350-MONOMER; 6.1.1.18 91247,10664,19477,92122 Glutamine--tRNA ligase, cytoplasmic (EC 6.1.1.18) (Glutaminyl-tRNA synthetase) (GlnRS) (Protein OVULE ABORTION 9),Glutamine-tRNA ligase/glutaminyl-tRNA protein,Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein,Glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS cytosol [GO:0005829]; ATP binding [GO:0005524]; glutamine-tRNA ligase activity [GO:0004819]; glutaminyl-tRNA aminoacylation [GO:0006425],ligase activity [GO:0016874]; translation [GO:0006412],ribosome [GO:0005840]; aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; tRNA aminoacylation for protein translation [GO:0006418],cytosol [GO:0005829]; ATP binding [GO:0005524]; glutamine-tRNA ligase activity [GO:0004819]; glutaminyl-tRNA aminoacylation [GO:0006425]; glutamyl-tRNA aminoacylation [GO:0006424]; plant ovule development [GO:0048481] locus:2183199;,locus:2032965; AT1G25350,AT5G19720 glutaminyl-tRNA Os01g0185200 protein (Putative tRNA-glutamine synthetase) (cDNA clone:J013001P05, full insert sequence) (tRNA-glutamine synthetase),Os05g0182800 protein (Putative glutaminyl-tRNA synthetase),Os01g0185200 protein (Fragment),Os05g0182800 protein (Fragment),Os01g0185200 protein Q5VRX8,Q65WY6,A0A0P0UZU0,A0A0P0WIS0,A0A0P0UZ61 Q5VRX8_ORYSJ,Q65WY6_ORYSJ,A0A0P0UZU0_ORYSJ,A0A0P0WIS0_ORYSJ,A0A0P0UZ61_ORYSJ P0510F03.13-1 Os01g0185200 OsJ_00666 OSNPB_010185200,Os05g0182800 Os05g0182800 OsJ_17365 OSNPB_050182800 P0683B12.3,Os01g0185200 OSNPB_010185200,Os05g0182800 OSNPB_050182800 ENOG411DT09 PP2C27 Q9SLA1,Q9SD02,P93006,A0A178VD67 P2C22_ARATH,P2C47_ARATH,P2C27_ARATH,A0A178VD67_ARATH Probable protein phosphatase 2C 22 (AtPP2C22) (EC 3.1.3.16),Probable protein phosphatase 2C 47 (AtPP2C47) (EC 3.1.3.16),Probable protein phosphatase 2C 27 (AtPP2C27) (EC 3.1.3.16) (Probable protein phosphatase 2C G group 1) (AtPP2CG1),Protein phosphatase 2C family protein DISRUPTION PHENOTYPE: Decreased salt tolerance. {ECO:0000269|PubMed:22627139}. FUNCTION: Confers salt tolerance by triggering the expression of stress-responsive genes. {ECO:0000269|PubMed:22627139}. 3.1.3.16 42674,39486,41757,34710 Probable protein phosphatase 2C 22 (AtPP2C22) (EC 3.1.3.16),Probable protein phosphatase 2C 47 (AtPP2C47) (EC 3.1.3.16),Probable protein phosphatase 2C 27 (AtPP2C27) (EC 3.1.3.16) (Probable protein phosphatase 2C G group 1) (AtPP2CG1),Protein phosphatase 2C family protein cytosol [GO:0005829]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; regulation of defense response to virus [GO:0050688],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; regulation of transcription from RNA polymerase II promoter in response to salt stress [GO:0061416]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flower, and trichomes. {ECO:0000269|PubMed:22627139}. locus:2050296;,locus:2081785;,locus:2057635; AT2G25620,AT3G51470,AT2G33700 phosphatase 2C Probable protein phosphatase 2C 57 (OsPP2C57) (EC 3.1.3.16),Os06g0597200 protein (Fragment),Os10g0541200 protein Q69VD9,A0A0P0WYB3,A0A0N7KS54 P2C57_ORYSJ,A0A0P0WYB3_ORYSJ,A0A0N7KS54_ORYSJ Os06g0597200 LOC_Os06g39600 OsJ_21867 P0417D05.18-1 P0417D05.18-2,Os06g0597200 OSNPB_060597200,Os10g0541200 OSNPB_100541200 ENOG411DT04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDA1 CD39 family protein Probable apyrase 3 (OsAPY3) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase),Apyrase (GDA1/CD39 family protein, expressed) (Os11g0439600 protein) (cDNA clone:001-029-C02, full insert sequence) (cDNA clone:006-206-C10, full insert sequence) (cDNA clone:J023036G10, full insert sequence),Os11g0126800 protein (Fragment),Os11g0440200 protein,Os11g0125900 protein,Os11g0126400 protein,Os12g0123600 protein Q2QYE1,Q53KM3,Q0IUZ4,A0A0P0Y1M2,A0A0P0XYD2,A0A0N7KSD1,A0A0P0Y6B3 APY3_ORYSJ,Q53KM3_ORYSJ,Q0IUZ4_ORYSJ,A0A0P0Y1M2_ORYSJ,A0A0P0XYD2_ORYSJ,A0A0N7KSD1_ORYSJ,A0A0P0Y6B3_ORYSJ APY3 Os12g0123500 LOC_Os12g02980 OsJ_35056,LOC_Os11g25260 Os11g0439600 OSNPB_110439600,Os11g0126800 OSNPB_110126800,Os11g0440200 OSNPB_110440200,Os11g0125900 OSNPB_110125900,Os11g0126400 OSNPB_110126400,Os12g0123600 OSNPB_120123600 FUNCTION: Catalyzes the hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates. {ECO:0000250}. ENOG411DT05 NAC021 Q84TE6 NAC22_ARATH NAC domain-containing protein 21/22 (ANAC021/ANAC022) FUNCTION: Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. 36569 NAC domain-containing protein 21/22 (ANAC021/ANAC022) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; lateral root development [GO:0048527]; primary shoot apical meristem specification [GO:0010072]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. locus:2012035; AT1G56010 NAC domain-containing protein 21 Os06g0675600 protein (Putative NAC domain protein NAC1) (cDNA clone:001-119-A03, full insert sequence) Q653V8 Q653V8_ORYSJ Os06g0675600 Os06g0675600 B1153E06.1 OSNPB_060675600 ENOG411DT06 O80593 O80593_ARATH At1g10020 (Formin-like protein (DUF1005)) (T27I1.4 protein) 49435 At1g10020 (Formin-like protein (DUF1005)) (T27I1.4 protein) locus:2201881; AT1G10020 Protein of unknown function (DUF1005) Os07g0133500 protein (cDNA clone:002-100-D03, full insert sequence) Q7XXR7 Q7XXR7_ORYSJ Os07g0133500 OJ1118_D07.19 OsJ_22992 OSNPB_070133500 P0507H12.4 ENOG411DT07 GIGANTUS 1 Q944S2 Q944S2_ARATH At2g47790/F17A22.18 (Expressed protein) (Transducin/WD40 repeat-like superfamily protein) FUNCTION: Involved in the control of plant growth development. Acts as negative regulator of seed germination, cell division in meristematic regions, plant growth and overall biomass accumulation. May function by regulating ribosome activities and biogenesis in plant cells. {ECO:0000269|PubMed:24467952}. 43066 At2g47790/F17A22.18 (Expressed protein) (Transducin/WD40 repeat-like superfamily protein) regulation of growth [GO:0040008]; regulation of seed germination [GO:0010029] locus:2043393; AT2G47790 WD repeat-containing protein 89 Os12g0294100 protein (Transducin family protein, putative, expressed) (cDNA clone:J013030D09, full insert sequence) Q0INT5 Q0INT5_ORYSJ Os12g0294100 LOC_Os12g19590 Os12g0294100 OSNPB_120294100 ENOG411DT00 APEM9 Q8W4B2,A0A1I9LSU4 APEM9_ARATH,A0A1I9LSU4_ARATH Protein APEM9 (ABERRANT PEROXISOME MORPHOLOGY 9) (Protein DAYU),3-phosphoinositide-dependent protein kinase-1 DISRUPTION PHENOTYPE: Embryo lethality, when homozygous. {ECO:0000269|PubMed:21487094, ECO:0000269|PubMed:24510720}. FUNCTION: Involved in peroxisome biogenesis and matrix protein import (PubMed:24510720). Required for pollen maturation and in vivo germination via its role in peroxisomal function, which partially involves jasmonic acid biosynthesis (PubMed:24510720). Transported to peroxisomes via the interaction with PEX19-1 (PubMed:21487094). Required for peroxisomal protein import by acting as an anchoring protein for the AAA ATPase complex, which consists of PEX1 and PEX6 (PubMed:21487094). {ECO:0000269|PubMed:21487094, ECO:0000269|PubMed:24510720}. 37467,29957 Protein APEM9 (ABERRANT PEROXISOME MORPHOLOGY 9) (Protein DAYU),3-phosphoinositide-dependent protein kinase-1 integral component of membrane [GO:0016021]; nucleolus [GO:0005730]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; peroxisomal membrane transport [GO:0015919]; peroxisomal transport [GO:0043574],intracellular [GO:0005622]; kinase activity [GO:0016301]; peroxisomal membrane transport [GO:0015919] DEVELOPMENTAL STAGE: Not detected in microspores before and at stage of pollen mitosis I. Expressed in bicellular, tricellular and mature pollen grains. {ECO:0000269|PubMed:24510720}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, buds and fruits. {ECO:0000269|PubMed:21487094}. locus:1005716603; AT3G10572 3-phosphoinositide-dependent protein 3-phosphoinositide-dependent protein kinase-1-like (Os06g0702800 protein) (cDNA clone:J033072H04, full insert sequence) Q5Z824 Q5Z824_ORYSJ Os06g0702800 OJ1215_E11.3 OsJ_22547 OSNPB_060702800 ENOG411DT01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0005 Os07g0177300 protein (Putative z-protein) Q6ZEY6 Q6ZEY6_ORYSJ OJ1361_E02.102 Os07g0177300 OsJ_23305 OSNPB_070177300 P0534H07.34 ENOG411DT02 DJA6,DJA5 Q9SJZ7,Q940V1 DNJA6_ARATH,Q940V1_ARATH Chaperone protein dnaJ A6, chloroplastic (atDjA6) (Chaperone protein dnaJ A26) (AtDjA26),AT4g39960/T5J17_130 (Molecular chaperone Hsp40/DnaJ family protein) FUNCTION: May function together with HSC70 chaperone to assist protein folding and prevent protein aggregation during heat stress in the chloroplast. {ECO:0000305|PubMed:23894646}. 47761,48032 Chaperone protein dnaJ A6, chloroplastic (atDjA6) (Chaperone protein dnaJ A26) (AtDjA26),AT4g39960/T5J17_130 (Molecular chaperone Hsp40/DnaJ family protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to heat [GO:0009408] locus:2041258;,locus:2140035; AT2G22360,AT4G39960 chaperone protein Chaperone protein dnaJ A7B, chloroplastic (Chaperone protein dnaJ A7) (OsDjA7),Chaperone protein dnaJ A7A, chloroplastic (Chaperone protein dnaJ A7) (OsDjA7),Chaperone protein dnaJ A8, chloroplastic (OsDjA8) P0DO02,P0DO01,P0DO03 DJA7B_ORYSJ,DJA7A_ORYSJ,DJA8_ORYSJ DJA7B DJA7 Os05g0334000 LOC_Os05g26926 OJ1005_D04.17 OSJNBa0049D13.3,DJA7A DJA7 Os05g0333500 LOC_Os05g26902 OJ1005_D04.16 OsJ_18101 OSJNBa0049D13.2,DJA8 Os05g0334400 LOC_Os05g26926 OJ1005_D04.18 OSJNBa0049D13.4 FUNCTION: Plays pivotal roles in chloroplast development. Is essential for the regulation of chloroplast development and differentiation. {ECO:0000269|PubMed:26210810}. MISCELLANEOUS: Plants silencing DJA7 exhibit albino lethal phenotypes, display abnormal cellular structures, organelles and chloroplasts, and strong reduction of the expression of CAB1R, CAB2R, PsaA and PsbA genes, tightly associated with chloroplast development. {ECO:0000269|PubMed:26210810}. ENOG411DT03 B9DGS8,Q8GXG8 B9DGS8_ARATH,Q8GXG8_ARATH AT1G14820 protein (Sec14p-like phosphatidylinositol transfer family protein),Putative phosphatidylinositol/ phosphatidylcholine transfer protein (Sec14p-like phosphatidylinositol transfer family protein) 28299,26798 AT1G14820 protein (Sec14p-like phosphatidylinositol transfer family protein),Putative phosphatidylinositol/ phosphatidylcholine transfer protein (Sec14p-like phosphatidylinositol transfer family protein) locus:2006732; AT1G14820 sec14 cytosolic NA NA NA NA NA NA NA ENOG411DVXD DUO3 F4I6S6 F4I6S6_ARATH Homeodomain-like superfamily protein Complete male gametophyte defective-D. Twell-2009 137304 Homeodomain-like superfamily protein DNA binding [GO:0003677] locus:2019434; AT1G64570 NA Os03g0672700 protein (Fragment),Os12g0153466 protein Q0DPP9,A0A0P0Y754 Q0DPP9_ORYSJ,A0A0P0Y754_ORYSJ Os03g0672700 Os03g0672700 OSNPB_030672700,Os12g0153466 OSNPB_120153466 ENOG411DVXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA anion transporter 6 chloroplastic-like Probable anion transporter 5, chloroplastic (Phosphate transporter 4;5),Os09g0556400 protein (Fragment) Q0IZQ3,A0A0P0XR24 PHT45_ORYSJ,A0A0P0XR24_ORYSJ PHT4;5 Os09g0556400 LOC_Os09g38410,Os09g0556400 OSNPB_090556400 FUNCTION: Probable anion transporter. {ECO:0000250}. ENOG411DVXA HMG1 P14891 HMDH1_ARATH 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (AtHMGR1) (HMG-CoA reductase 1) (EC 1.1.1.34) DISRUPTION PHENOTYPE: Dwarfing, early senescence, and sterility. 65% lower levels in triterpenoids content and 50% lower levels in sterol content. Hmg1 and hmg2 double mutants are lethal during male gametophyte development. {ECO:0000269|PubMed:14871314, ECO:0000269|PubMed:17917299, ECO:0000269|PubMed:19363204}. Inhibition of root elongation dwarf sterile rapid senescence in mature leaves,The hmg1 mutant has reduced levels of sterols compared to wild-type plants but its sterol composition is normal. It also has about a 65% drop in triterpenoid levels compared to wild-type plants. Dwarf; Completely sterile; Early senescence-T. Muranaka-2004 FUNCTION: Catalyzes the synthesis of mevalonate, the specific precursor of all isoprenoid compounds present in plants. {ECO:0000269|PubMed:14871314, ECO:0000269|PubMed:17917299, ECO:0000269|PubMed:19041104, ECO:0000269|PubMed:19363204}. PATHWAY: Metabolic intermediate biosynthesis; (R)-mevalonate biosynthesis; (R)-mevalonate from acetyl-CoA: step 3/3. ARA:AT1G76490-MONOMER;MetaCyc:AT1G76490-MONOMER; Biosynthesis of secondary metabolites (01110),Bile secretion (04976),Terpenoid backbone biosynthesis (00900),Metabolic pathways (01100) 1.1.1.34 63598 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (AtHMGR1) (HMG-CoA reductase 1) (EC 1.1.1.34) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; hydroxymethylglutaryl-CoA reductase (NADPH) activity [GO:0004420]; hydroxymethylglutaryl-CoA reductase activity [GO:0042282]; NADP binding [GO:0050661]; coenzyme A metabolic process [GO:0015936]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287]; isoprenoid biosynthetic process [GO:0008299]; sterol biosynthetic process [GO:0016126] TISSUE SPECIFICITY: Found in all tissues. Isoform Short is expressed at low levels specifically in flowers. Expressed in both the tapetum and microspores. {ECO:0000269|PubMed:19363204, ECO:0000269|PubMed:7496400, ECO:0000269|PubMed:8302869}. locus:2011656; AT1G76490 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 (HMG-CoA reductase 3) (EC 1.1.1.34),3-hydroxy-3-methylglutaryl coenzyme A reductase (HMG-CoA reductase) (EC 1.1.1.34),Os09g0492700 protein (Fragment),3-hydroxy-3-methylglutaryl coenzyme A reductase (HMG-CoA reductase) (EC 1.1.1.34) (Fragment) Q9XHL5,Q0J0M8,A0A0P0XNG7,A0A0P0XHS1 HMDH3_ORYSJ,Q0J0M8_ORYSJ,A0A0P0XNG7_ORYSJ,A0A0P0XHS1_ORYSJ HMG3 HMGR3 Os08g0512700 LOC_Os08g40180 P0711H09.15,Os09g0492700 OSNPB_090492700,Os08g0512700 OSNPB_080512700 FUNCTION: Catalyzes the synthesis of mevalonate. The specific precursor of all isoprenoid compounds present in plants. ENOG411DVXN O82413,F4KFB0 SYHM_ARATH,F4KFB0_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) (Histidyl-tRNA synthetase 1) (AtHRS1),Class II aaRS and biotin synthetases superfamily protein ARA:AT3G46100-MONOMER; 6.1.1.21; 6.1.1.21 54559,30310 Histidine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) (Histidyl-tRNA synthetase 1) (AtHRS1),Class II aaRS and biotin synthetases superfamily protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; histidine-tRNA ligase activity [GO:0004821]; histidyl-tRNA aminoacylation [GO:0006427],cytoplasm [GO:0005737] locus:2075306;,locus:1009023403; AT3G46100,AT5G03406 Histidyl-tRNA Os02g0754700 protein (Putative histidine-tRNA ligase) (cDNA clone:J013092L05, full insert sequence) (cDNA clone:J023049L24, full insert sequence) Q6Z695 Q6Z695_ORYSJ Os02g0754700 Os02g0754700 OsJ_08428 OSNPB_020754700 P0627E03.18 ENOG411DVXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0262800 protein (Putative bacterial blight-resistance protein Xa1),NB-ARC domain containing protein, expressed (Os10g0125700 protein) (Putative bacterial blight resistance protein Xa1-like protein),Os02g0263601 protein (Os02g0263900 protein),Os01g0112800 protein (Os01g0112866 protein),Os02g0261600 protein (Os02g0261800 protein),Os01g0178900 protein (Fragment),Os02g0263432 protein,Os02g0261400 protein,Os01g0113150 protein (Fragment),Os02g0262600 protein Q6EPC5,Q7G8G4,A0A0P0VHC1,C7IXE3,Q0E285,Q0JQ69,B9F4W3,A0A0P0VHI3,A0A0P0UX47,A0A0P0VHB1 Q6EPC5_ORYSJ,Q7G8G4_ORYSJ,A0A0P0VHC1_ORYSJ,C7IXE3_ORYSJ,Q0E285_ORYSJ,Q0JQ69_ORYSJ,B9F4W3_ORYSJ,A0A0P0VHI3_ORYSJ,A0A0P0UX47_ORYSJ,A0A0P0VHB1_ORYSJ Os02g0262800 Os02g0262800 OSJNBa0011J03.3 OSJNBb0049K19.30 OSNPB_020262800,OSJNBa0020E23.2 LOC_Os10g03670 Os10g0125700 OsJ_30590 OSJNBa0056A20.14 OSNPB_100125700,Os02g0263900 Os02g0263601 OSNPB_020263601 OSNPB_020263900,Os01g0112800 Os01g0112866 OSNPB_010112800,Os02g0261800 Os02g0261600 OsJ_06154 OSNPB_020261800,Os01g0178900 Os01g0178900 OSNPB_010178900,Os02g0263432 OsJ_06161 OSNPB_020263432,Os02g0261400 OSNPB_020261400,Os01g0113150 OSNPB_010113150,Os02g0262600 OSNPB_020262600 ENOG411DVXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF618 Expressed protein (Os12g0126800 protein),Os11g0130100 protein (Fragment) Q2QYA2,A0A0P0XYW8 Q2QYA2_ORYSJ,A0A0P0XYW8_ORYSJ Os12g0126800 LOC_Os12g03340 Os12g0126800 OsJ_35083 OSNPB_120126800,Os11g0130100 OSNPB_110130100 ENOG411DVXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os08g0120700 protein,Expressed protein (Os11g0278300 protein),Os08g0121533 protein,Os08g0121500 protein (Fragment) Q6YPF0,Q53PW1,Q6YRM9,A0A0P0XB46 Q6YPF0_ORYSJ,Q53PW1_ORYSJ,Q6YRM9_ORYSJ,A0A0P0XB46_ORYSJ Os08g0120700 B1203H11.13 OsJ_25857 OSNPB_080120700,Os11g0278300 LOC_Os11g17720 Os11g0278300 OsJ_33627 OSNPB_110278300,OSJNBa0091F23.12 Os08g0121533 B1203H11.27 OsJ_25862 OSJNBa0073J19.4 OSNPB_080121533,Os08g0121500 OSNPB_080121500 ENOG411DVXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein NA NA NA NA NA NA NA ENOG411DVXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0597400 protein A0A0N7KLD2 A0A0N7KLD2_ORYSJ Os05g0597400 OSNPB_050597400 ENOG411DVXT Q9FF17 ALG6_ARATH Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.267) (Asparagine-linked glycosylation protein 6 homolog) (Dol-P-Glc:Man(9)GlcNAc(2)-PP-Dol alpha-1,3-glucosyltransferase) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase) FUNCTION: Adds the first glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation. Transfers glucose from dolichyl phosphate glucose (Dol-P-Glc) onto the lipid-linked oligosaccharide Man(9)GlcNAc(2)-PP-Dol (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. ARA:AT5G38460-MONOMER; R-ATH-446193; 2.4.1.267 61113 Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.267) (Asparagine-linked glycosylation protein 6 homolog) (Dol-P-Glc:Man(9)GlcNAc(2)-PP-Dol alpha-1,3-glucosyltransferase) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity [GO:0042281]; oligosaccharide-lipid intermediate biosynthetic process [GO:0006490]; protein N-linked glycosylation [GO:0006487] locus:2177431; AT5G38460 Dolichyl pyrophosphate Man9GlcNAc2 Alpha-1,3-glucosyltransferase (EC 2.4.1.-) Q7XIE1 Q7XIE1_ORYSJ P0039H02.105 Os07g0164500 P0428D12.125 OsJ_23200 OSNPB_070164500 ENOG411DVXU MYB46 Q9LXV2 MYB46_ARATH Transcription factor MYB46 (Myb-related protein 46) (AtMYB46) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants myb48 and myb83 nearly lack secondary wall thickening, stop growing after developing one to two pairs of small leaves and subsequently die. {ECO:0000269|PubMed:19808805}. FUNCTION: Transcription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels (PubMed:17890373). Transcription activator of the mannan synthase CSLA9 that recognizes and binds to the DNA consensus sequence 5'-[AG][GT]T[AT]GGT[GA]-3' cis-regulatory element of CSLA9 promoter (PubMed:24243147). Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1. Functions redundantly with MYB83 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). Is an obligate component of the transcriptional regulatory complex toward the commitment of secondary wall cellulose synthesis. Is required for functional expression of the three secondary wall CESA genes, CESA4, CESA7 and CESA8 (PubMed:23726771). {ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:23726771, ECO:0000269|PubMed:24243147}. MISCELLANEOUS: Plants over-expressing MYB46 show a significant increase in mannan synthase activity and mannan content in plant. {ECO:0000269|PubMed:24243147}. 31541 Transcription factor MYB46 (Myb-related protein 46) (AtMYB46) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; defense response to fungus [GO:0050832]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of secondary cell wall biogenesis [GO:1901348]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary cell wall biogenesis [GO:2000652]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed at low levels in stems and siliques, specifically in xylem. {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:9839469}. locus:2182275; AT5G12870 Transcription factor Os12g0515300 protein A0A0P0YAP8 A0A0P0YAP8_ORYSJ Os12g0515300 OSNPB_120515300 ENOG411DVXS PCMP-E70 O80488,F4HZF5,A0A1P8AS27,F4HZF4,A0A1P8AS60,A0A1P8AS45 PPR23_ARATH,F4HZF5_ARATH,A0A1P8AS27_ARATH,F4HZF4_ARATH,A0A1P8AS60_ARATH,A0A1P8AS45_ARATH Pentatricopeptide repeat-containing protein At1g09190,Ppx-GppA phosphatase 53962,37197,60479,61543,57673,36134 Pentatricopeptide repeat-containing protein At1g09190,Ppx-GppA phosphatase intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],pyrophosphatase activity [GO:0016462]; phosphorus metabolic process [GO:0006793] locus:2195296;,locus:4515102510; AT1G09190,AT1G09195 Ppx/GppA phosphatase family NA NA NA NA NA NA NA ENOG411DVXP MDC12.16,T29H11_90,ECIP1 Q94BR1,Q9STL9,Q8W4Q4 Q94BR1_ARATH,Q9STL9_ARATH,Q8W4Q4_ARATH MA3 domain-containing protein (Putative topoisomerase),At3g48390/T29H11_90 (MA3 domain-containing protein) (Uncharacterized protein T29H11_90),AT4g24800/F6I7_10 (MA3 domain-containing protein) 77556,70752,77436 MA3 domain-containing protein (Putative topoisomerase),At3g48390/T29H11_90 (MA3 domain-containing protein) (Uncharacterized protein T29H11_90),AT4g24800/F6I7_10 (MA3 domain-containing protein) isomerase activity [GO:0016853],cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; response to ethylene [GO:0009723]; response to salt stress [GO:0009651] locus:2162007;,locus:2101155;,locus:2126788; AT5G63190,AT3G48390,AT4G24800 MA3 domain-containing protein Os08g0120500 protein (Putative MA3 domain-containing protein),Os08g0120500 protein (Fragment) Q6YPF2,A0A0P0XB48,A0A0P0XBB0 Q6YPF2_ORYSJ,A0A0P0XB48_ORYSJ,A0A0P0XBB0_ORYSJ Os08g0120500 B1203H11.9 OsJ_25855 OSNPB_080120500,Os08g0120500 OSNPB_080120500 ENOG411DVXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal peptidase peptidase S26 NA NA NA NA NA NA NA ENOG411DVXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0113900 protein (cDNA clone:J033107D23, full insert sequence),Os06g0113900 protein (cDNA clone:J013106B06, full insert sequence) (cDNA clone:J013108C12, full insert sequence),Os06g0113900 protein (Fragment) B7ETL1,Q9LWT7,A0A0P0WRM2,A0A0P0WRT2 B7ETL1_ORYSJ,Q9LWT7_ORYSJ,A0A0P0WRM2_ORYSJ,A0A0P0WRT2_ORYSJ Os06g0113900 OSNPB_060113900,P0541H01.18-1 Os06g0113900 OSNPB_060113900 ENOG411DVX6 psbC P56778 PSBC_ARATH Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) FUNCTION: One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. {ECO:0000255|HAMAP-Rule:MF_01496}. MISCELLANEOUS: The assembly of PsbC into photosystem II complex requires the presence of LPA2 and LPA3. {ECO:0000269|PubMed:17601825, ECO:0000269|PubMed:20605914}. MetaCyc:ATCG00280-MONOMER; 51868 Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) chloroplast [GO:0009507]; chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem II reaction center [GO:0009539]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; metal ion binding [GO:0046872]; photosynthetic electron transport in photosystem II [GO:0009772]; protein-chromophore linkage [GO:0018298] locus:504954652; ATCG00280 One of the components of the core antenna complex of photosystem II. It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of photosystem II (By similarity) Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) P0C367 PSBC_ORYSJ psbC LOC_Osp1g00180 Nip019 FUNCTION: One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. {ECO:0000255|HAMAP-Rule:MF_01496}. ENOG411DVX7 TAT Q9LVY1,Q9FN30 TAT_ARATH,TAT2_ARATH Tyrosine aminotransferase (TAT) (EC 2.6.1.5) (L-tyrosine:2-oxoglutarate aminotransferase),Probable aminotransferase TAT2 (EC 2.6.1.-) (Tyrosine aminotransferase 2) FUNCTION: Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro. {ECO:0000269|PubMed:21188077}. PATHWAY: Amino-acid degradation; L-phenylalanine degradation; acetoacetate and fumarate from L-phenylalanine: step 2/6. ARA:AT5G36160-MONOMER;,ARA:AT5G53970-MONOMER; R-ATH-71182; 2.6.1.5; 2.6.1.5,2.6.1.- 46450,45902 Tyrosine aminotransferase (TAT) (EC 2.6.1.5) (L-tyrosine:2-oxoglutarate aminotransferase),Probable aminotransferase TAT2 (EC 2.6.1.-) (Tyrosine aminotransferase 2) cytosol [GO:0005829]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; L-tyrosine:2-oxoglutarate aminotransferase activity [GO:0004838]; pyridoxal phosphate binding [GO:0030170]; biosynthetic process [GO:0009058]; cellular amino acid metabolic process [GO:0006520]; L-phenylalanine catabolic process [GO:0006559]; tyrosine catabolic process [GO:0006572],cytosol [GO:0005829]; L-tyrosine:2-oxoglutarate aminotransferase activity [GO:0004838]; pyridoxal phosphate binding [GO:0030170]; tyrosine catabolic process [GO:0006572]; vitamin E biosynthetic process [GO:0010189] locus:2158926;,locus:2154714; AT5G36160,AT5G53970 Aminotransferase Nicotianamine aminotransferase homolog (Os02g0302700 protein) (Putative nicotianamine aminotransferase A) (cDNA clone:001-021-D11, full insert sequence),Os11g0552000 protein,Os02g0306401 protein Q6K5U4,A0A0P0Y3J9,A0A0P0VI36 Q6K5U4_ORYSJ,A0A0P0Y3J9_ORYSJ,A0A0P0VI36_ORYSJ Os02g0302700 OsNAAT2 Os02g0302700 OSNPB_020302700 P0477B05.15,Os11g0552000 OSNPB_110552000,Os02g0306401 OSNPB_020306401 ENOG411DVX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF88 Os07g0637200 protein,Os03g0370200 protein A0A0P0X944,A0A0P0VYQ7 A0A0P0X944_ORYSJ,A0A0P0VYQ7_ORYSJ Os07g0637200 OSNPB_070637200,Os03g0370200 OSNPB_030370200 ENOG411DVX5 A2RVN2 A2RVN2_ARATH At1g27060 (Regulator of chromosome condensation (RCC1) family protein) 40731 At1g27060 (Regulator of chromosome condensation (RCC1) family protein) locus:2205794; AT1G27060 regulator of chromosome Os01g0777800 protein A0A0P0V8V0 A0A0P0V8V0_ORYSJ Os01g0777800 OSNPB_010777800 ENOG411DVX2 B5X503 B5X503_ARATH At5g11240 (Transducin family protein / WD-40 repeat family protein) R-ATH-6791226; 66884 At5g11240 (Transducin family protein / WD-40 repeat family protein) nucleolus [GO:0005730]; nucleus [GO:0005634]; rRNA processing [GO:0006364] locus:2147972; AT5G11240 Dip2/Utp12 Family Os03g0300300 protein (Transducin family protein, putative, expressed) (cDNA clone:J013074C22, full insert sequence) Q10MP8 Q10MP8_ORYSJ LOC_Os03g18840 Os03g0300300 OsJ_10517 OSNPB_030300300 ENOG411DVX3 STT3B Q9FX21 STT3B_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B (Oligosaccharyl transferase subunit STT3B) (STT3-B) (EC 2.4.99.18) (Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:12972670}. FUNCTION: Catalytic subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). SST3A seems to be involved in complex substrate specificity (By similarity). {ECO:0000250, ECO:0000269|PubMed:12972670}. PATHWAY: Protein modification; protein glycosylation. ARA:AT1G34130-MONOMER; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 2.4.99.18 82980 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B (Oligosaccharyl transferase subunit STT3B) (STT3-B) (EC 2.4.99.18) (Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; oligosaccharyltransferase complex [GO:0008250]; plasma membrane [GO:0005886]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; post-translational protein modification [GO:0043687]; protein N-linked glycosylation via asparagine [GO:0018279] TISSUE SPECIFICITY: Expressed preferentially in the root but also in the shoot. {ECO:0000269|PubMed:12972670}. locus:2009051; AT1G34130 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B (Oligosaccharyl transferase subunit STT3B) (STT3-B) (EC 2.4.99.18) (Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) Q7XQ88 STT3B_ORYSJ STT3B Os04g0675500 LOC_Os04g57890 OsJ_16609 OSJNBa0018M05.20 FUNCTION: Catalytic subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). SST3A seems to be involved in complex substrate specificity (By similarity). {ECO:0000250}. ENOG411DVX0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAG domain Os04g0619900 protein A0A0P0WEX6 A0A0P0WEX6_ORYSJ Os04g0619900 OSNPB_040619900 ENOG411DVX1 P67 Q8GWE0,Q9LS25 PP314_ARATH,PP420_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic (Chloroplastic RNA-binding protein P67) (Protein SUPPRESSOR OF VARIEGATION 7),Pentatricopeptide repeat-containing protein At5g46580, chloroplastic DISRUPTION PHENOTYPE: Reduced plant size and pale-green leaf phenotype. {ECO:0000269|PubMed:20935174, ECO:0000269|PubMed:21187014}. Small, pale green rosette-S. Rodermel-2010 FUNCTION: Involved in chloroplast RNA processing. Can bind RNA (PubMed:11034340). Involved in chloroplast development (PubMed:21187014). Involved in chloroplast ribosomal RNA (rRNA) processing and/or translation. Required for FtsH-mediated chloroplast biogenesis (PubMed:20935174). Involved in translation and accumulation of chloroplast ATP synthase subunits (PubMed:23076438). {ECO:0000269|PubMed:11034340, ECO:0000269|PubMed:20935174, ECO:0000269|PubMed:21187014, ECO:0000269|PubMed:23076438}. 78243,80880 Pentatricopeptide repeat-containing protein At4g16390, chloroplastic (Chloroplastic RNA-binding protein P67) (Protein SUPPRESSOR OF VARIEGATION 7),Pentatricopeptide repeat-containing protein At5g46580, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; endonuclease activity [GO:0004519]; mRNA binding [GO:0003729]; nucleotide binding [GO:0000166]; chloroplast organization [GO:0009658]; chloroplast RNA processing [GO:0031425]; positive regulation of translation [GO:0045727]; RNA modification [GO:0009451],chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] TISSUE SPECIFICITY: Expressed in leaves and flowers and at lower levels in stems and flower buds. {ECO:0000269|PubMed:11034340}. locus:2130549;,locus:2142320; AT4G16390,AT5G46580 Pentatricopeptide repeat-containing protein Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic,Os03g0856100 protein (Putative chloroplastic RNA-binding protein, with alternative splicing isoforms) Q10PZ4,Q75IP7 ATP4_ORYSJ,Q75IP7_ORYSJ Os03g0215900 LOC_Os03g11670,Os03g0856100 Os03g0856100 Os03g63910 OsJ_13428 OSNPB_030856100 FUNCTION: Involved in translation and accumulation of chloroplast ATP synthase subunits. {ECO:0000250|UniProtKB:B4F8Z1}. ENOG411DVX8 Q93ZN4 Q93ZN4_ARATH AT4g12830/T20K18_180 (Alpha/beta-Hydrolases superfamily protein) 43763 AT4g12830/T20K18_180 (Alpha/beta-Hydrolases superfamily protein) chloroplast [GO:0009507]; hydrolase activity [GO:0016787] locus:2135843; AT4G12830 hydrolase alpha beta fold family NA NA NA NA NA NA NA ENOG411DVX9 ORC1B,ORC1A Q9SU24,Q710E8 ORC1B_ARATH,ORC1A_ARATH Origin of replication complex subunit 1B (AtORC1b) (Origin recognition complex 1b protein) (Protein UNFERTILIZED EMBRYO SAC 13),Origin of replication complex subunit 1A (AtORC1a) (Origin recognition complex subunit 1a) DISRUPTION PHENOTYPE: Lethal (PubMed:19171893). Unfertilized ovules but normal pollen tube attraction (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000303|PubMed:19171893}.,DISRUPTION PHENOTYPE: Lethal. {ECO:0000303|PubMed:19171893}. FUNCTION: Essential protein required for ovules fertilization (PubMed:15634699, PubMed:19171893). Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the ARS consensus sequence (ACS) of origins of replication (By similarity). H3K4me3 effector that regulates positively the transcription of a subset of genes (PubMed:19171893). {ECO:0000250|UniProtKB:P54784, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:19171893}.,FUNCTION: Essential protein (PubMed:19171893). Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the ARS consensus sequence (ACS) of origins of replication (By similarity). H3K4me3 effector that regulates positively the transcription of a subset of genes (PubMed:19171893). {ECO:0000250|UniProtKB:P54784, ECO:0000269|PubMed:19171893}. R-ATH-68616;R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69298; 92170,91896 Origin of replication complex subunit 1B (AtORC1b) (Origin recognition complex 1b protein) (Protein UNFERTILIZED EMBRYO SAC 13),Origin of replication complex subunit 1A (AtORC1a) (Origin recognition complex subunit 1a) nucleus [GO:0005634]; origin recognition complex [GO:0000808]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; double-stranded methylated DNA binding [GO:0010385]; metal ion binding [GO:0046872]; DNA replication [GO:0006260]; double fertilization forming a zygote and endosperm [GO:0009567]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; origin recognition complex [GO:0000808]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; double-stranded methylated DNA binding [GO:0010385]; metal ion binding [GO:0046872]; DNA replication [GO:0006260]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Restricted to proliferating cells. First active during embryogenesis, but inactive in mature embryos. Expressed in shoot and root apical meristems. Later observed in lateral root primordia and meristems. Detected in young flower buds, developing anthers and mature pollen. {ECO:0000269|PubMed:16179646}.,DEVELOPMENTAL STAGE: Preferentially expressed in endoreplicating cells, such as cells of the apical hook of dark-grown seedlings. {ECO:0000269|PubMed:16179646}. TISSUE SPECIFICITY: Follow a cell-cycle regulation with a peak at the G1/S-phase (PubMed:16179646). Mostly expressed in flower buds, and, to a lower exent, in roots, leaves and stems (PubMed:16179646, PubMed:15358564). {ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}.,TISSUE SPECIFICITY: Follow a cell-cycle regulation with a peak at the G1/S-phase (PubMed:16179646). Mostly expressed in siliques, flowers and flower buds, and, to a lower extent, in roots, leaves and stems (PubMed:16179646, PubMed:15358564). {ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}. locus:2135575;,locus:2130090; AT4G12620,AT4G14700 origin recognition complex subunit Origin of replication complex subunit 1 (OsORC1) Q5SMU7 ORC1_ORYSJ ORC1 Os06g0187000 LOC_Os06g08790 OsJ_20389 P0470C02.11 FUNCTION: Essential protein (By similarity). Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the ARS consensus sequence (ACS) of origins of replication (By similarity). H3K4me3 effector that regulates positively the transcription of a subset of genes (By similarity). Required for cell proliferation (PubMed:10996242). {ECO:0000250|UniProtKB:P54784, ECO:0000250|UniProtKB:Q710E8, ECO:0000303|PubMed:10996242}. ENOG411EJDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor-A C terminal domain NA NA NA NA NA NA NA ENOG411EJDN Q9LX46 FBL68_ARATH F-box/LRR-repeat protein At3g59250 47325 F-box/LRR-repeat protein At3g59250 locus:2081252; AT3G59250 F-box domain NA NA NA NA NA NA NA ENOG411E1CJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GEM-like protein GRAM domain containing protein, expressed (Os10g0489000 protein) (Putative ABA-responsive protein) (Putative GRAM domain protein) Q7XD68 Q7XD68_ORYSJ B1288B10.1 Os10g0489000 LOC_Os10g34730 OsJ_31970 OSJNBb0049A16.10 OSNPB_100489000 ENOG411E9GM MYN8.3 Q9SUE8,F4KJ52,Q8L602,B3H4A5 Q9SUE8_ARATH,F4KJ52_ARATH,Q8L602_ARATH,B3H4A5_ARATH CCT motif family protein (Uncharacterized protein AT4g27900) (Uncharacterized protein At4g27900; T13J8.10) (Uncharacterized protein T13J8.10),CCT motif family protein,CCT motif family protein (Uncharacterized protein At5g53420) 29450,20984,30037,23202 CCT motif family protein (Uncharacterized protein AT4g27900) (Uncharacterized protein At4g27900; T13J8.10) (Uncharacterized protein T13J8.10),CCT motif family protein,CCT motif family protein (Uncharacterized protein At5g53420) nucleus [GO:0005634] locus:2132902;,locus:2178441; AT4G27900,AT5G53420 CCT motif NA NA NA NA NA NA NA ENOG411DYMM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA subtilisin-like Os10g0524600 protein (Putative serine protease) (Subtilisin N-terminal Region family protein, expressed) (cDNA clone:J023012B10, full insert sequence) Q8RVC2 Q8RVC2_ORYSJ Os10g0524600 LOC_Os10g38080 Os10g0524600 OsJ_32216 OSJNBb0005J14.3 OSNPB_100524600 ENOG411DYMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411DYMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase OSJNBa0070O11.4 protein (Os04g0645500 protein) (cDNA clone:001-106-H01, full insert sequence) Q7XQE5 Q7XQE5_ORYSJ Os04g0645500 OsJ_16400 OSJNBa0070O11.4 OSNPB_040645500 ENOG411DYMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter NA NA NA NA NA NA NA ENOG411DYME KINUA,KINUB,ARK2,ARK3 Q9FZ06,Q9LPC6,A0A1P8AMI8,F4HU85,F4HU83,F4IC87 KINUA_ARATH,KINUB_ARATH,A0A1P8AMI8_ARATH,F4HU85_ARATH,F4HU83_ARATH,F4IC87_ARATH Kinesin-like protein KIN-UA (AtKINUa) (Protein ARMADILLO REPEAT KINESIN3) (Protein ARMADILLO REPEAT-CONTAINING KINESIN 3) (kinesin-like protein PAK),Kinesin-like protein KIN-UB (AtKINUb) (Protein ARMADILLO REPEAT KINESIN2) (Protein ARMADILLO REPEAT-CONTAINING KINESIN 2),Kinesin-like protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21387573}. Twisted root growth-G. Wasteneys-2008 FUNCTION: Involved in the control of epidermal-cell morphogenesis in roots and helical growth of roots by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules. Seems to be involved in the control of cell-file rotation (or twisting). {ECO:0000269|PubMed:17971038}. ARA:GQT-654-MONOMER; 100887,98423,83213,96479,100860,100958 Kinesin-like protein KIN-UA (AtKINUa) (Protein ARMADILLO REPEAT KINESIN3) (Protein ARMADILLO REPEAT-CONTAINING KINESIN 3) (kinesin-like protein PAK),Kinesin-like protein KIN-UB (AtKINUb) (Protein ARMADILLO REPEAT KINESIN2) (Protein ARMADILLO REPEAT-CONTAINING KINESIN 2),Kinesin-like protein cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018]; regulation of microtubule-based process [GO:0032886]; root development [GO:0048364],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018]; regulation of microtubule-based process [GO:0032886]; root development [GO:0048364],microtubule [GO:0005874]; preprophase band [GO:0009574]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018]; regulation of microtubule-based process [GO:0032886]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed in leaves, guard cells, trichomes, vascular tissues, stele of the root tip region and columella cells (PubMed:17971038). Highest expression detected in guard cells (PubMed:21387573). {ECO:0000269|PubMed:17971038, ECO:0000269|PubMed:21387573}.,TISSUE SPECIFICITY: Expressed in the basal regions and petioles of immature leaves and in the root elongation zone. {ECO:0000269|PubMed:17971038}. locus:2025497;,locus:2034640; AT1G12430,AT1G01950 Armadillo repeat-containing kinesin-like protein Kinesin-like protein KIN-UB (Protein ARMADILLO REPEAT KINESIN2) Q5VQ09 KINUB_ORYSJ KINUB Os06g0137100 LOC_Os06g04560 P0548D03.30 ENOG411DYMX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC Os12g0605500 protein (Tesmin/TSO1-like CXC domain containing protein, expressed) (cDNA clone:J033075J10, full insert sequence) Q2QMG6 Q2QMG6_ORYSJ Os12g0605500 LOC_Os12g41230 Os12g0605500 OSNPB_120605500 ENOG411DYMY Q940Q2 PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590, mitochondrial 60849 Pentatricopeptide repeat-containing protein At1g07590, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; response to cadmium ion [GO:0046686]; RNA modification [GO:0009451] locus:2024952; AT1G07590 Pentatricopeptide repeat-containing protein Os08g0162250 protein A0A0P0XCE7 A0A0P0XCE7_ORYSJ Os08g0162250 OSNPB_080162250 ENOG411DYMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 734A2 (EC 1.14.-.-) Q6Z6D6 C7342_ORYSJ CYP734A2 Os02g0204700 LOC_Os02g11020 OSJNBb0056C19.10 P0544H11.26 FUNCTION: Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis. Is a multifunctional and multisubstrate enzyme that controls the endogenous bioactive BR content both by direct inactivation of castasterone and by decreasing the levels of BR precursors. Catalyzes the oxidation of carbon 22 hydroxylated BR intermediates to produce C26 oxidized metabolites. {ECO:0000269|PubMed:21418356}. MISCELLANEOUS: Plants overexpressing CYP734A2 show a dwarf phenotype, characterized by abnormal leaves with stiff, tortuous blades, undeveloped leaf sheaths, no flowering and bear seeds. Over-expression of CYP734A2 causes an important reduction of the levels of the BRs castasterone, 6-deoxocastasterone and 6-deoxotyphasterol. ENOG411DYMW TRE1 Q9SU50 TRE1_ARATH Trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) (Trehalase 1) (AtTRE1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants accumulate high levels of trehalose and starch. {ECO:0000269|PubMed:21394451, ECO:0000269|PubMed:21426427}. FUNCTION: Involved in the regulation of trehalose content by hydrolyzing trehalose to glucose. {ECO:0000269|PubMed:11161063, ECO:0000269|PubMed:17673210, ECO:0000269|PubMed:21426427}. 3.2.1.28 71355 Trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) (Trehalase 1) (AtTRE1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; alpha,alpha-trehalase activity [GO:0004555]; trehalose catabolic process [GO:0005993] TISSUE SPECIFICITY: Highly expressed in flowers. Expressed at low levels in leaves and stems. {ECO:0000269|PubMed:11161063, ECO:0000269|PubMed:15181208}. locus:2134961; AT4G24040 alphaalpha-trehalase (EC 3.2.1.28) Probable trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) Q9FWC1 TRE_ORYSJ Os10g0521000 LOC_Os10g37660 OSJNBb0018B10.19 FUNCTION: Involved in the regulation of trehalose content by hydrolyzing trehalose to glucose. {ECO:0000250}. ENOG411DYMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain RBR-type E3 ubiquitin transferase (EC 2.3.2.31),Os09g0559100 protein Q653S8,A0A0P0XQD5 Q653S8_ORYSJ,A0A0P0XQD5_ORYSJ Os09g0559000 OJ1065_E04.13 OsJ_30319 OSNPB_090559000,Os09g0559100 OSNPB_090559100 ENOG411DYMU CSLD1 O49323 CSLD1_ARATH Cellulose synthase-like protein D1 (AtCslD1) (EC 2.4.1.-) Male gametophyte defective-W. Willats-2008 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ARA:AT2G33100-MONOMER; 2.4.1.- 116067 Cellulose synthase-like protein D1 (AtCslD1) (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; mannan synthase activity [GO:0051753]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall organization or biogenesis [GO:0071669]; pollen germination [GO:0009846] locus:2046505; AT2G33100 Cellulose Cellulose synthase-like protein D5 (EC 2.4.1.-) (OsCslD5) Q5Z6E5 CSLD5_ORYSJ CSLD5 Os06g0336500 LOC_Os06g22980 OsJ_020361 P0427E01.10 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ENOG411DYMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinesterase NA NA NA NA NA NA NA ENOG411DYMP CERK1 A8R7E6 CERK1_ARATH Chitin elicitor receptor kinase 1 (AtCERK1) (EC 2.7.11.1) (LysM domain receptor-like kinase 1) (LysM RLK1) (LysM-containing receptor-like kinase 1) DISRUPTION PHENOTYPE: Complete loss of response to the chitin elicitor, including loss of MAPK activation, generation of reactive oxygen species, and transcriptional activation. Impaired chitin-mediated resistance against biotic and abiotic stresses such as tolerance to salinity, heavy-metal stresses, and Botrytis cinerea infection. Reduced resistance to incompatible fungi such as Erysiphe cichoracearum and Alternaria brassicicola. Enhanced susceptibility to Pseudomonas syringae pv. tomato DC3000 associated with peptidoglycan insensitivity. Impaired chitin-induced phosphorylation of PBL27 (PubMed:24750441). {ECO:0000269|PubMed:18042724, ECO:0000269|PubMed:18263776, ECO:0000269|PubMed:19816132, ECO:0000269|PubMed:22106285, ECO:0000269|PubMed:22461667, ECO:0000269|PubMed:24750441}. Induction of all chitooligosaccharide- responsive genes was blocked in the mutant. Mutant showed more susceptibility to fungal pa thogens but had no effect on bacterial infection neither affected the SA- and jasmonic acid/ethylene-responsive pathways.,completely lost the ability to respond to the chitin elicitor Susceptible to fungal infection-G. Stacey-2008 FUNCTION: Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity toward both biotic and abiotic stresses (e.g. tolerance to salinity, heavy-metal stresses, and Botrytis cinerea infection). Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands. Involved in the resistance to pathogenic fungi Alternaria brassicicola and Erysiphe cichoracearum, probably by sensing microbe-associated molecular patterns (MAMP) and pathogen-associated molecular patterns (PAMP). Plays an essential role in detecting peptidoglycans (e.g. PGNs) and restricting bacterial growth. Target of the bacterial type III effector E3-ligase protein hopAB2/avrPtoB of Pseudomonas syringae pv. tomato DC3000 that mediates ubiquitination and subsequent proteolysis, thus blocking all defense responses by suppressing PAMP-triggered immunity (PTI). Mediates chitin-induced phosphorylation of PBL27 (PubMed:24750441). {ECO:0000269|PubMed:18042724, ECO:0000269|PubMed:18263776, ECO:0000269|PubMed:19249211, ECO:0000269|PubMed:19816132, ECO:0000269|PubMed:20610395, ECO:0000269|PubMed:22106285, ECO:0000269|PubMed:22461667, ECO:0000269|PubMed:22891159, ECO:0000269|PubMed:24750441}. 2.7.11.1 67315 Chitin elicitor receptor kinase 1 (AtCERK1) (EC 2.7.11.1) (LysM domain receptor-like kinase 1) (LysM RLK1) (LysM-containing receptor-like kinase 1) integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; chitin binding [GO:0008061]; chitosan binding [GO:2001080]; kinase activity [GO:0016301]; protein homodimerization activity [GO:0042803]; protein kinase activity [GO:0004672]; protein self-association [GO:0043621]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein kinase activity [GO:0019199]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface pattern recognition receptor signaling pathway [GO:0002752]; cellular response to chitin [GO:0071323]; cellular response to molecule of bacterial origin [GO:0071219]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; detection of molecule of fungal origin [GO:0032491]; detection of peptidoglycan [GO:0032499]; innate immune response [GO:0045087]; intracellular signal transduction [GO:0035556]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; response to chitin [GO:0010200] TISSUE SPECIFICITY: Expressed ubiquitously, with lowest expression in pollen. {ECO:0000269|PubMed:18263776}. locus:2089860; AT3G21630 proline-rich receptor-like protein kinase LysM domain receptor-like kinase 10 (OsLysM-RLK10) (EC 2.7.11.1) (LysM-containing receptor-like kinase 10) (Receptor-like cytoplasmic kinase 276) (OsRLCK276),Chitin elicitor receptor kinase 1 (OsCERK1) (EC 2.7.11.1) (LysM domain receptor-like kinase 1) (LysM RLK1) (LysM-containing receptor-like kinase 1) (LysM domain receptor-like kinase 9) (OsLysM-RLK9),Os08g0538300 protein (Fragment),Os09g0325140 protein,Os09g0325000 protein D7UPN3,A0A0P0XII1,A0A0N7KQ79,A0A0P0XL05,A0A0N7KQK5 RLK10_ORYSJ,CERK1_ORYSJ,A0A0N7KQ79_ORYSJ,A0A0P0XL05_ORYSJ,A0A0N7KQK5_ORYSJ RLK10 RLCK276 Os09g0511000 LOC_Os09g33630 OsJ_29979,CERK1 RLK9 Os08g0538300 LOC_Os08g42580 P0665C04.34 P0666G10.101,Os08g0538300 OSNPB_080538300,Os09g0325140 OSNPB_090325140,Os09g0325000 OSNPB_090325000 DISRUPTION PHENOTYPE: Suppression of the defense responses induced by chitin oligosaccharides. {ECO:0000269|PubMed:21070404}. FUNCTION: Lysin motif (LysM) receptor kinase required as a cell surface receptor for chitin elicitor (chitooligosaccharides) signaling leading to innate immunity in response to biotic stresses. Involved in the resistance to pathogenic fungi, probably by sensing microbe-associated molecular patterns (MAMP) and pathogen-associated molecular patterns (PAMP) (PubMed:21070404, PubMed:22891159, PubMed:24964058). Involved in the detection of microbial peptidoglycans (PGNs) and mediates PGN response (PubMed:24964058). Plays dual roles in PGN and chitin signaling during innate immunity. Acts as an adapter for LYP4 and LYP6 and mediates signal transduction from the extracellular to intracellular spaces. Participates to the activation of defense genes during response to PGN and chitin (PubMed:25335639). Phosphorylates the downstream partner RLCK185 in response to chitin elicitation (PubMed:23498959). {ECO:0000269|PubMed:21070404, ECO:0000269|PubMed:22891159, ECO:0000269|PubMed:23498959, ECO:0000269|PubMed:24964058, ECO:0000269|PubMed:25335639}. ENOG411DYMQ Q94A09 Q94A09_ARATH AT1G36310 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At1g36310) FUNCTION: Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA via its methyltransferase domain. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. {ECO:0000269|PubMed:21653555}. 44960 AT1G36310 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (Uncharacterized protein At1g36310) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ferrous iron binding [GO:0008198]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [GO:0016706]; tRNA (uracil) methyltransferase activity [GO:0016300]; tRNA binding [GO:0000049]; tRNA methyltransferase activity [GO:0008175]; tRNA wobble uridine modification [GO:0002098] locus:2035947; AT1G36310 Alkylated DNA repair protein alkB homolog Methyltransferase-like (Os02g0750500 protein) (cDNA clone:J033075P05, full insert sequence) Q6Z8K5 Q6Z8K5_ORYSJ Os02g0750500 Os02g0750500 OSNPB_020750500 P0431B06.15 ENOG411E7EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wound-induced protein Os02g0160900 protein C7IZA3 C7IZA3_ORYSJ Os02g0160900 Os02g0160900 OSNPB_020160900 ENOG411DYM9 PDPK2,PDPK1,PDK1 Q4V3C8,Q9XF67,A0A1P8BAG1,F4JWB0 PDPK2_ARATH,PDPK1_ARATH,A0A1P8BAG1_ARATH,F4JWB0_ARATH 3-phosphoinositide-dependent protein kinase 2 (AtPDK2) (EC 2.7.11.1),3-phosphoinositide-dependent protein kinase 1 (AtPDK1) (EC 2.7.11.1),3'-phosphoinositide-dependent protein kinase 1 FUNCTION: May couple lipid signals to the activation-loop phosphorylation of several protein kinases of the so-called AGC kinase family. Interacts via its pleckstrin homology domain with phosphatidic acid, PtdIns3P and PtdIns(3,4)P2 and to a lesser extent with PtdIns(4,5)P2 and PtdIns4P. May play a general role in signaling processes controlling the pathogen/stress response, polar auxin transport and development. Transphosphorylates the AGC protein kinases OXI1/AGC2-1, PK1/S6K1, PK19/S6K2 and PID resulting in their activation. {ECO:0000269|PubMed:10371193, ECO:0000269|PubMed:14749726, ECO:0000269|PubMed:16377759, ECO:0000269|PubMed:16601102, ECO:0000269|PubMed:16973627}. R-ATH-1257604;R-ATH-165158;R-ATH-202424;R-ATH-2730905;R-ATH-389357;R-ATH-444257;R-ATH-5218920; 2.7.11.1 54441,54711,34244,45287 3-phosphoinositide-dependent protein kinase 2 (AtPDK2) (EC 2.7.11.1),3-phosphoinositide-dependent protein kinase 1 (AtPDK1) (EC 2.7.11.1),3'-phosphoinositide-dependent protein kinase 1 cytoplasm [GO:0005737]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105],cytoplasm [GO:0005737]; intracellular [GO:0005622]; membrane [GO:0016020]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphatidic acid binding [GO:0070300]; phosphatidylinositol binding [GO:0035091]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; positive regulation of protein kinase activity [GO:0045860]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14749726}. locus:2075740;,locus:2184357; AT3G10540,AT5G04510 3-phosphoinositide-dependent protein Os01g0872800 protein (Putative 3-phosphoinositide-dependent protein kinase-1) (Putative phosphoinositide dependent kinase-1),Os01g0872800 protein (Fragment) Q8RUE8,A0A0N7KE55 Q8RUE8_ORYSJ,A0A0N7KE55_ORYSJ OSJNBb0008G24.23 Os01g0872800 OsJ_04253 OSNPB_010872800 P0491F11.17,Os01g0872800 OSNPB_010872800 ENOG411DYM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-conjugating enzyme E2 NA NA NA NA NA NA NA ENOG411DYM7 APT1,APT3 P31166,Q9SUW2,A0A1P8B6N4,F4HSX1 APT1_ARATH,APT3_ARATH,A0A1P8B6N4_ARATH,F4HSX1_ARATH Adenine phosphoribosyltransferase 1, chloroplastic (APRT 1) (AtAPT1) (EC 2.4.2.7),Adenine phosphoribosyltransferase 3 (EC 2.4.2.7),Adenine phosphoribosyl transferase 3,Adenine phosphoribosyl transferase 1 DISRUPTION PHENOTYPE: Male sterility due to pollen abortion after meiosis. Accumulation of free bases of cytokinins and enhanced resistance to exogenous cytokinins. {ECO:0000269|PubMed:23658065, ECO:0000269|PubMed:9520269}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:23658065}. Male sterile; Resistant to 2,6-diaminopurine (toxic analog of adenine)-M. Laloue-1998 FUNCTION: Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Contributes primarly to the recycling of adenine into adenylate nucleotides, but is also involved in the inactivation of cytokinins by phosphoribosylation. Catalyzes the conversion of cytokinins from free bases (active form) to the corresponding nucleotides (inactive form). {ECO:0000269|PubMed:12010467, ECO:0000269|PubMed:22859732, ECO:0000269|PubMed:23658065, ECO:0000269|PubMed:9520269}.,FUNCTION: Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. May contribute to the recycling of adenine into adenylate nucleotides and the inactivation of cytokinins by phosphoribosylation. Possesses low activity toward adenine and cytokinins. {ECO:0000269|PubMed:12010467, ECO:0000269|PubMed:23658065}. MISCELLANEOUS: Plants with reduced activity of APT1 and increased levels of cellular adenine show enhanced stress tolerance and improve growth, leading to increases in plant biomass. {ECO:0000305|PubMed:22859732}. PATHWAY: Purine metabolism; AMP biosynthesis via salvage pathway; AMP from adenine: step 1/1. MetaCyc:AT1G27450-MONOMER;,ARA:AT4G22570-MONOMER; R-ATH-6798695;R-ATH-74217; 2.4.2.7 26396,20352,11772,30988 Adenine phosphoribosyltransferase 1, chloroplastic (APRT 1) (AtAPT1) (EC 2.4.2.7),Adenine phosphoribosyltransferase 3 (EC 2.4.2.7),Adenine phosphoribosyl transferase 3,Adenine phosphoribosyl transferase 1 chloroplast [GO:0009507]; adenine phosphoribosyltransferase activity [GO:0003999]; adenine salvage [GO:0006168]; AMP salvage [GO:0044209]; cytokinin metabolic process [GO:0009690]; purine ribonucleoside salvage [GO:0006166],cytosol [GO:0005829]; adenine phosphoribosyltransferase activity [GO:0003999]; adenine salvage [GO:0006168]; AMP salvage [GO:0044209]; purine ribonucleoside salvage [GO:0006166],transferase activity [GO:0016740]; nucleoside metabolic process [GO:0009116],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; adenine phosphoribosyltransferase activity [GO:0003999]; adenine salvage [GO:0006168]; circadian rhythm [GO:0007623]; cytokinin metabolic process [GO:0009690]; nucleoside metabolic process [GO:0009116]; response to cadmium ion [GO:0046686] locus:2127480;,locus:2016019; AT1G27450,AT4G22570 adenine phosphoribosyltransferase Adenine phosphoribosyltransferase 1, putative, expressed (Os12g0589100 protein) (cDNA clone:001-040-E09, full insert sequence) (cDNA clone:006-202-E08, full insert sequence) (cDNA clone:J033051K07, full insert sequence),Adenine phosphoribosyltransferase 1, putative (Os12g0592400 protein) Q2QMV8,Q2QMT1 Q2QMV8_ORYSJ,Q2QMT1_ORYSJ Os12g0589100 LOC_Os12g39860 Os12g0589100 OSNPB_120589100,Os12g0592400 LOC_Os12g40130 OsJ_36714 OSNPB_120592400 ENOG411DYM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DYM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411DYM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0556600 protein,Os11g0555600 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J033110K06, full insert sequence) B9GB71,Q2R2N4 B9GB71_ORYSJ,Q2R2N4_ORYSJ Os11g0556600 OsJ_34252 OSNPB_110556600,Os11g0555600 LOC_Os11g35220 Os11g0555600 OSNPB_110555600 ENOG411DYM3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os02g0640800 protein (Short-chain dehydrogenase/reductase protein-like) (cDNA clone:006-304-D09, full insert sequence),Os02g0640800 protein Q6H7C9,A0A0P0VM73,A0A0P0VM51 Q6H7C9_ORYSJ,A0A0P0VM73_ORYSJ,A0A0P0VM51_ORYSJ P0010C01.43-1 Os02g0640800 OsJ_07684 OSNPB_020640800,Os02g0640800 OSNPB_020640800 ENOG411DYM1 Q8RX00,F4HUI0,A8MQF9 Q8RX00_ARATH,F4HUI0_ARATH,A8MQF9_ARATH CAAX amino terminal protease family protein (Uncharacterized protein At1g14270),CAAX amino terminal protease family protein 24634,38552,26804 CAAX amino terminal protease family protein (Uncharacterized protein At1g14270),CAAX amino terminal protease family protein integral component of membrane [GO:0016021]; peptidase activity [GO:0008233] locus:2012487; AT1G14270 CAAX amino terminal protease family protein Os09g0413200 protein (cDNA clone:J023036B16, full insert sequence),Os08g0436600 protein B7EH34,A0A0P0XGB9 B7EH34_ORYSJ,A0A0P0XGB9_ORYSJ Os09g0413200 OSNPB_090413200,Os08g0436600 OSNPB_080436600 ENOG411E6P8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MORN NA NA NA NA NA NA NA ENOG411E3I6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metallo-beta-lactamase superfamily NA NA NA NA NA NA NA ENOG411E6PA T8B10_180 Q9M207,A0A1I9LS63 Q9M207_ARATH,A0A1I9LS63_ARATH At3g60520 (Uncharacterized protein At3g60520) (Uncharacterized protein T8B10_180) (Zinc ion-binding protein),Zinc ion-binding protein 14618,13294 At3g60520 (Uncharacterized protein At3g60520) (Uncharacterized protein T8B10_180) (Zinc ion-binding protein),Zinc ion-binding protein locus:2103341; AT3G60520 NA NA NA NA NA NA NA NA ENOG411E6PE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2H2 zinc finger malformed spikelet (OSJNBa0058G03.3 protein) (Os04g0444100 protein),Os02g0562200 protein Q7XRM1,A3A824 Q7XRM1_ORYSJ,A3A824_ORYSJ Os04g0444100 MLS Os04g0444100 OsJ_14929 OSJNBa0058G03.3 OSNPB_040444100,Os02g0562200 OsJ_07157 OSNPB_020562200 ENOG411EEZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Potassium voltage-gated channel subfamily H (Eag-related) member NA NA NA NA NA NA NA ENOG411EEZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E6PF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putrescine N-methyltransferase NA NA NA NA NA NA NA ENOG411E6PH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain OSJNBa0089N06.13 protein (Os04g0629200 protein) (cDNA, clone: J100086C21, full insert sequence) B7FAN0 B7FAN0_ORYSJ Os04g0629200 OSJNBa0089N06.13 OSNPB_040629200 ENOG411EEZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HopJ type III effector protein NA NA NA NA NA NA NA ENOG411E6X9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0344700 protein (cDNA, clone: J080093N22, full insert sequence),Os09g0343100 protein Q6EPG6,A0A0P0XKZ1 Q6EPG6_ORYSJ,A0A0P0XKZ1_ORYSJ Os09g0344700 Os09g0344700 OSJNBb0057I13.42 OSJNBb0085I16.8 OSNPB_090344700,Os09g0343100 OSNPB_090343100 ENOG411E6X8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E6PY AtXYP6,EDA4 Q94AX3,F4IN76 Q94AX3_ARATH,F4IN76_ARATH At2g48140/F11L15.4 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Xylogen like protein 6),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 20145,13222 At2g48140/F11L15.4 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Xylogen like protein 6),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein anchored component of membrane [GO:0031225]; megagametogenesis [GO:0009561] locus:2039341; AT2G48140 AAI Os03g0793900 protein (Fragment) A0A0P0W474 A0A0P0W474_ORYSJ Os03g0793900 OSNPB_030793900 ENOG411E6X0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0565250 protein A0A0P0WDW8 A0A0P0WDW8_ORYSJ Os04g0565250 OSNPB_040565250 ENOG411E6X4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0669300 protein A0A0P0X9Y7 A0A0P0X9Y7_ORYSJ Os07g0669300 OSNPB_070669300 ENOG411E6X7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter NA NA NA NA NA NA NA ENOG411E6X6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0925600 protein (cDNA clone:J023054M22, full insert sequence) Q5JK12 Q5JK12_ORYSJ Os01g0925600 Os01g0925600 OsJ_04609 OSJNBa0093F16.8 OSNPB_010925600 ENOG411E6XI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411E6XH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0256200 protein (Putative histidine-rich protein) (cDNA clone:J033039D20, full insert sequence) Q6EN34 Q6EN34_ORYSJ Os02g0256200 OsJ_06129 OSJNBa0052K15.29 OSNPB_020256200 P0613F08.11 ENOG411E6XK Q58FU4,Q45GI1,B3H7F5 Q58FU4_ARATH,Q45GI1_ARATH,B3H7F5_ARATH HMG-box (High mobility group) DNA-binding family protein 25934,18565,24988 HMG-box (High mobility group) DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677],DNA binding [GO:0003677] locus:2153514; AT5G05330 NA NA NA NA NA NA NA NA ENOG411E6XJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hypoxia induced protein conserved region containing protein expressed Hypoxia induced protein conserved region containing protein, expressed (Os12g0111600 protein) (cDNA clone:002-157-A04, full insert sequence) (cDNA clone:J013047D01, full insert sequence),Os11g0112000 protein (Fragment) Q2QYP0,A0A0P0XZ12 Q2QYP0_ORYSJ,A0A0P0XZ12_ORYSJ LOC_Os12g02040 Os12g0111600 OSNPB_120111600,Os11g0112000 OSNPB_110112000 ENOG411E6XM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6XN ENODL20 F4IVN9 F4IVN9_ARATH Early nodulin-like protein 20 18612 Early nodulin-like protein 20 anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:1006230143; AT2G27035 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E6XA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Auxin responsive protein (Os03g0660200 protein) (Putative auxin responsive protein),Auxin responsive protein, expressed (Os12g0626200 protein) Q75GP5,Q2QLW2 Q75GP5_ORYSJ,Q2QLW2_ORYSJ OSJNBb0065L20.18 Os03g0660200 LOC_Os03g45800 OsJ_11981 OSNPB_030660200,LOC_Os12g43110 Os12g0626200 OsJ_36941 OSNPB_120626200 ENOG411E6XC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E6XB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0120700 protein (Putative histidine-rich Ca2+-binding protein) (cDNA clone:J013098B14, full insert sequence) Q9LGP3 Q9LGP3_ORYSJ Os01g0120700 OsJ_00174 OSNPB_010120700 P0684C01.4 P0698A04.36 ENOG411E6XE MBD11 Q9LW00 MBD11_ARATH Methyl-CpG-binding domain-containing protein 11 (AtMBD11) (MBD11) (Methyl-CpG-binding protein MBD11) DISRUPTION PHENOTYPE: Variety of phenotypic effects, including aerial rosettes, serrated leaves, abnormal position of flowers, fertility problems and late flowering. {ECO:0000269|PubMed:12954765}. FUNCTION: Transcriptional regulator that binds DNA independently of its methylation status. Required during plant organogenesis and development. {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:15010609}. 27642 Methyl-CpG-binding domain-containing protein 11 (AtMBD11) (MBD11) (Methyl-CpG-binding protein MBD11) nucleus [GO:0005634]; methyl-CpG binding [GO:0008327]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves (around hydathodes), buds, flowers (carpels and pollen grains), stems (around nodes), siliques, mature seeds and roots. {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:15010609}. locus:2093197; AT3G15790 Methyl-CpG binding domain Methyl-CpG binding domain containing protein, expressed (Os12g0620400 protein) (cDNA clone:001-020-H05, full insert sequence) (cDNA clone:J023126H05, full insert sequence),Os12g0620400 protein,Os12g0620400 protein (Fragment) Q2QM23,A0A0N7KUD7,A0A0P0YC74 Q2QM23_ORYSJ,A0A0N7KUD7_ORYSJ,A0A0P0YC74_ORYSJ Os12g0620400 LOC_Os12g42550 OSNPB_120620400,Os12g0620400 OSNPB_120620400 ENOG411E6XD F6I1.17 Q9FZ43 Q9FZ43_ARATH 7-dehydrocholesterol reductase-like protein (At1g16810/F17F16.8) (F17F16.8/F17F16.8) (F6I1.17 protein) 16382 7-dehydrocholesterol reductase-like protein (At1g16810/F17F16.8) (F17F16.8/F17F16.8) (F6I1.17 protein) nucleolus [GO:0005730] locus:2015586; AT1G16810 Eukaryotic family of unknown function (DUF1754) NA NA NA NA NA NA NA ENOG411E6XG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0690200 protein,Os04g0589500 protein (Fragment) Q6ZGY1,A0A0P0WE37 Q6ZGY1_ORYSJ,A0A0P0WE37_ORYSJ Os02g0690200 Os02g0690200 OJ1743_B12.36 OsJ_07991 OSNPB_020690200,Os04g0589500 OSNPB_040589500 ENOG411E6XF rpl22 P56795 RK22_ARATH 50S ribosomal protein L22, chloroplastic FUNCTION: This protein binds specifically to 23S rRNA. {ECO:0000250}.; FUNCTION: The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. {ECO:0000250}. 18587 50S ribosomal protein L22, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrial large ribosomal subunit [GO:0005762]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954704; ATCG00810 ribosomal protein L22 NA NA NA NA NA NA NA ENOG411E6XY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os04g0617350 protein A0A0N7KJP9 A0A0N7KJP9_ORYSJ Os04g0617350 OSNPB_040617350 ENOG411E6XQ MAC12.16 Q9FFY5,F4K5D0 Q9FFY5_ARATH,F4K5D0_ARATH Cotton fiber protein 27790,21991 Cotton fiber protein locus:2159128; AT5G13880 NA NA NA NA NA NA NA NA ENOG411E6XP MIF3 Q2Q493 MIF3_ARATH Mini zinc finger protein 3 (AtMIF3) FUNCTION: Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}. 9751 Mini zinc finger protein 3 (AtMIF3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; multicellular organism development [GO:0007275]; regulation of meristem development [GO:0048509]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers, present in seedlings and leaves, and weakly observed in inflorescence and siliques. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:18713354}. locus:4010713452; AT1G18835 ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411E6XS Q9LXZ3 FB204_ARATH F-box protein At3g56470 43159 F-box protein At3g56470 locus:2102519; AT3G56470 FBOX NA NA NA NA NA NA NA ENOG411E6XR SPH1,SPH74 F4JLS0,Q2HQ46 SPH1_ARATH,SPH74_ARATH S-protein homolog 1,S-protein homolog 74 17563,17754 S-protein homolog 1,S-protein homolog 74 extracellular region [GO:0005576]; pollen-pistil interaction [GO:0009875]; rejection of self pollen [GO:0060320],extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] TISSUE SPECIFICITY: Restricted to floral tissues. {ECO:0000269|PubMed:10344198}. locus:504955436;,locus:4010713917; AT4G16295,AT4G29035 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411E6XU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Heavy metal-associated domain containing protein, expressed (Os03g0751600 protein) (cDNA clone:006-310-A12, full insert sequence) (cDNA clone:006-311-G12, full insert sequence) Q8LLM9 Q8LLM9_ORYSJ OSJNBa0032E21.09 OJ1112_G08.2 Os03g0751600 LOC_Os03g54050 OSNPB_030751600 ENOG411E6XT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin family Os02g0628800 protein (Fragment) A0A0N7KFQ6 A0A0N7KFQ6_ORYSJ Os02g0628800 OSNPB_020628800 ENOG411E6XW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0094O15.16 protein (OSJNBb0004G23.2 protein) (Os04g0105200 protein) (cDNA clone:001-003-C04, full insert sequence) Q7XXI6 Q7XXI6_ORYSJ OSJNBb0004G23.2 Os04g0105200 OsJ_13509 OSJNBa0094O15.16 OSNPB_040105200 ENOG411E6XV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Septin AIG1 family protein, expressed (Os03g0835100 protein) (Putative GTP-binding protein, having alternative splicing products) Q75LI9 Q75LI9_ORYSJ Os03g0835100 LOC_Os03g61890 OSJNBa0096I06.18 OSNPB_030835100 ENOG411DYMK PAG1 O23715,A0A1P8AX55 PSA3_ARATH,A0A1P8AX55_ARATH Proteasome subunit alpha type-3 (EC 3.4.25.1) (20S proteasome alpha subunit G-1) (DiDi 17A-2a) (Proteasome component 8) (Proteasome subunit alpha type-7),Proteasome endopeptidase complex (EC 3.4.25.1) DISRUPTION PHENOTYPE: Lethal due to defect in male gametogenesis. {ECO:0000269|PubMed:20516081}. Homozygous mutant progeny cannot be generated from a self-crossed heterozygous parent. There is a defect in male gametogenesis. FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 27377,39331 Proteasome subunit alpha type-3 (EC 3.4.25.1) (20S proteasome alpha subunit G-1) (DiDi 17A-2a) (Proteasome component 8) (Proteasome subunit alpha type-7),Proteasome endopeptidase complex (EC 3.4.25.1) apoplast [GO:0048046]; cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; threonine-type endopeptidase activity [GO:0004298]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous low levels. {ECO:0000269|PubMed:11277426, ECO:0000269|PubMed:9611183}. locus:2059319; AT2G27020 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) Proteasome subunit alpha type-3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7),Proteasome subunit alpha type (EC 3.4.25.1) Q9LSU0,Q6F321 PSA3_ORYSJ,Q6F321_ORYSJ PAG1 Os01g0811100 LOC_Os01g59600 OsJ_03826 P0425G02.8 P0468B07.45,Os05g0490800 OsJ_19022 OSJNBa0088I06.6 OSNPB_050490800 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU000551}. ENOG411DYMD MWD22.2 Q84TE0,B9DH76,F4I7R5,F4JEB4 Q84TE0_ARATH,B9DH76_ARATH,F4I7R5_ARATH,F4JEB4_ARATH AT5G51080 protein (At5g51080) (RNase H family protein) (Uncharacterized protein At5g51080),AT5G51080 protein (RNase H family protein),RNase H domain-containing protein (RNase H family protein),Polynucleotidyl transferase, ribonuclease H-like superfamily protein 35407,28242,38545,31671 AT5G51080 protein (At5g51080) (RNase H family protein) (Uncharacterized protein At5g51080),AT5G51080 protein (RNase H family protein),RNase H domain-containing protein (RNase H family protein),Polynucleotidyl transferase, ribonuclease H-like superfamily protein nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523],nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; transferase activity [GO:0016740] locus:2176152;,locus:2032407;,locus:2096692; AT5G51080,AT1G24090,AT3G01410 RNase H domain-containing protein Os10g0458700 protein (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed),Os10g0458700 protein Q337N3,A0A0P0XUW0 Q337N3_ORYSJ,A0A0P0XUW0_ORYSJ LOC_Os10g32060 Os10g0458700 OsJ_31786 OSNPB_100458700,Os10g0458700 OSNPB_100458700 ENOG411DYMB RAF1.2,RAF1.1 Q9SR19,Q9LKR8 RAF2_ARATH,RAF1_ARATH Rubisco accumulation factor 1.2, chloroplastic,Rubisco accumulation factor 1.1, chloroplastic FUNCTION: Required for assembly or stability of RuBisCO. Acts at a postchaperonin step to fold and/or assemble the large subunit (rbcL) into RuBisCO. RAF1 binds first to a rbcL dimer (rbcL(2)), leading to a rbcL(8)-RAF1(4) complex formation. In the next step, RBCS displaces RAF1, thus resulting in holoenzyme formation. {ECO:0000269|PubMed:26237510}.,FUNCTION: Required for assembly or stability of RuBisCO. Acts at a postchaperonin step to fold and/or assemble the large subunit (rbcL) into RuBisCO. RAF1 binds first to a rbcL dimer (rbcL(2)), leading to a rbcL(8)-RAF1(4) complex formation. In the next step, RBCS displaces RAF1, thus resulting in holoenzyme formation. {ECO:0000250|UniProtKB:Q9SR19}. 50199,48237 Rubisco accumulation factor 1.2, chloroplastic,Rubisco accumulation factor 1.1, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast ribulose bisphosphate carboxylase complex biogenesis [GO:0080158],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2084888;,locus:2182763; AT3G04550,AT5G28500 NA Rubisco accumulation factor 1, chloroplastic,Os11g0553051 protein Q7XDY9,A0A0P0Y357 RAF1_ORYSJ,A0A0P0Y357_ORYSJ RAF1 Os10g0445600 LOC_Os10g30870 OsJ_31693,Os11g0553051 OSNPB_110553051 FUNCTION: Required for assembly or stability of RuBisCO. Acts at a postchaperonin step to fold and/or assemble the large subunit (LS) into RuBisCO (By similarity). {ECO:0000250}. ENOG411DYMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2921) Os01g0678000 protein,Os01g0678100 protein (cDNA clone:J013086I08, full insert sequence),Os01g0678400 protein (Fragment) Q5QM71,Q8S188,Q0JKF7 Q5QM71_ORYSJ,Q8S188_ORYSJ,Q0JKF7_ORYSJ Os01g0678000 B1144G04.20 OsJ_03001 OSNPB_010678000,Os01g0678100 B1144G04.22 OSNPB_010678100,Os01g0678400 Os01g0678400 OSNPB_010678400 ENOG411DYMA UBC2,UBC1 P42745,P25865 UBC2_ARATH,UBC1_ARATH Ubiquitin-conjugating enzyme E2 2 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 2) (Ubiquitin carrier protein 2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (Ubiquitin-protein ligase 2),Ubiquitin-conjugating enzyme E2 1 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 1) (Ubiquitin carrier protein 1) (Ubiquitin-conjugating enzyme E2-17 kDa 1) (Ubiquitin-protein ligase 1) The flowering of ubc1/2 double mutants is accelerated compared to wild type plants under long days and short days. Histone2B ubiquitination is lost in ubc1/2 mutants and FLC expression is repressed. There are gene-specific changes in the patterns of histone ubiquitination and methylation in this mutant.,This mutant flowers at the same time as wild type plants but a ubc1 ubc2 double mutant has accelerated flowering. Few rosette leaves-W. Shen-2008 FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806}.,FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806, ECO:0000269|PubMed:8386169}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. R-ATH-983168; 2.3.2.B5; 2.3.2.23 17279,17281 Ubiquitin-conjugating enzyme E2 2 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 2) (Ubiquitin carrier protein 2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (Ubiquitin-protein ligase 2),Ubiquitin-conjugating enzyme E2 1 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 1) (Ubiquitin carrier protein 1) (Ubiquitin-conjugating enzyme E2-17 kDa 1) (Ubiquitin-protein ligase 1) cytosol [GO:0005829]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; DNA repair [GO:0006281]; histone H2B ubiquitination [GO:0033523]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511]; vegetative to reproductive phase transition of meristem [GO:0010228],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; DNA repair [GO:0006281]; histone H2B ubiquitination [GO:0033523]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in all tissues examined. Lower levels found in leaves. {ECO:0000269|PubMed:8790283}.,TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:16339806, ECO:0000269|PubMed:8790283}. locus:2058806;,locus:2012622; AT2G02760,AT1G14400 ubiquitin-conjugating enzyme Os07g0166800 protein (OsRad6) (cDNA clone:J023055G02, full insert sequence) (cDNA clone:J023127H21, full insert sequence),Os05g0182500 protein (cDNA clone:001-035-F01, full insert sequence),Os05g0182500 protein (Putative ubiquitin conjugating protein),Os03g0791800 protein (Rad6) (Ubiquitin carrier protein) (Ubiquitin conjugated enzyme) (Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed) (cDNA clone:J013045G10, full insert sequence) (cDNA clone:J013116J09, full insert sequence) Q7XIC8,Q0DK90,Q5KQJ1,Q8SBC1 Q7XIC8_ORYSJ,Q0DK90_ORYSJ,Q5KQJ1_ORYSJ,Q8SBC1_ORYSJ P0039H02.138-1 OJ1641_C04.122-1 Os07g0166800 OsJ_23218 OSNPB_070166800,Os05g0182500 Os05g0182500 OsJ_17362 OSNPB_050182500,Os05g0182500 OSNPB_050182500 P0453H11.17,OsRad6 OSJNBb0060J21.28 LOC_Os03g57790 Os03g0791800 OsJ_12905 OSNPB_030791800 ENOG411DYMZ Q8L4C7 Q8L4C7_ARATH Leucine-rich repeat (LRR) family protein (Uncharacterized protein At4g23830:At4g23840) (Uncharacterized protein At4g23841) 65765 Leucine-rich repeat (LRR) family protein (Uncharacterized protein At4g23830:At4g23840) (Uncharacterized protein At4g23841) locus:2138131; AT4G23840 Leucine rich repeat family protein Os05g0212200 protein A0A0P0WJI2 A0A0P0WJI2_ORYSJ Os05g0212200 OSNPB_050212200 ENOG411DYMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glucan endo-1-3-beta-glucosidase Os03g0227400 protein (Fragment) A0A0P0VUY0 A0A0P0VUY0_ORYSJ Os03g0227400 OSNPB_030227400 ENOG411EEZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411EEZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor NA NA NA NA NA NA NA ENOG411DYM0 SNM1 Q38961,A0A1I9LSS2 SNM1_ARATH,A0A1I9LSS2_ARATH DNA cross-link repair protein SNM1 (AtSNM1),DNA repair metallo-beta-lactamase family protein Sensitive to BLM (DNA damaging agent) and hydrogen peroxide-B. Hohn-2004 FUNCTION: May be required for repair of DNA lesions formed after exposure to oxidative stress. {ECO:0000269|PubMed:15448639}. 55161,48497 DNA cross-link repair protein SNM1 (AtSNM1),DNA repair metallo-beta-lactamase family protein nuclear chromosome, telomeric region [GO:0000784]; 5'-3' exodeoxyribonuclease activity [GO:0035312]; damaged DNA binding [GO:0003684]; DNA repair [GO:0006281]; double-strand break repair via nonhomologous end joining [GO:0006303]; interstrand cross-link repair [GO:0036297]; protection from non-homologous end joining at telomere [GO:0031848] locus:2090832; AT3G26680 DNA cross-link repair protein OSJNBb0012E08.8 protein (Os04g0401800 protein) Q7XV88 Q7XV88_ORYSJ Os04g0401800 OSJNBb0012E08.8 OSNPB_040401800 ENOG411ECNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411ECNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECNA GSTU27 Q9LZG7 GSTUR_ARATH Glutathione S-transferase U27 (AtGSTU27) (EC 2.5.1.18) (GST class-tau member 27) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT3G43800-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 26761 Glutathione S-transferase U27 (AtGSTU27) (EC 2.5.1.18) (GST class-tau member 27) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to karrikin [GO:0080167]; toxin catabolic process [GO:0009407] locus:2101114; AT3G43800 Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411ECNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0164000 protein,Os05g0248400 protein,Os09g0285900 protein A0A0P0VF79,A0A0P0WJV9,A0A0P0XKB7 A0A0P0VF79_ORYSJ,A0A0P0WJV9_ORYSJ,A0A0P0XKB7_ORYSJ Os02g0164000 OSNPB_020164000,Os05g0248400 OSNPB_050248400,Os09g0285900 OSNPB_090285900 ENOG411ECND dl4295c F4JMH9,A0A1P8B7T3,O23498,Q84X23,Q84X24,A0A1P8B4R6,A0A1P8B7R1,F4JMH8,A0A1P8B7S6 HSP57_ARATH,A0A1P8B7T3_ARATH,O23498_ARATH,Q84X23_ARATH,Q84X24_ARATH,A0A1P8B4R6_ARATH,A0A1P8B7R1_ARATH,F4JMH8_ARATH,A0A1P8B7S6_ARATH Putative 57 kDa heat shock protein,Heat shock protein HSP20/alpha crystallin family,Heat shock protein HSP20/alpha crystallin family (Uncharacterized protein AT4g16540) (Uncharacterized protein dl4295c),Heat shock protein HSP20/alpha crystallin family (Uncharacterized protein At2g03020/T17M13.19),HSP20-like chaperone,Heat shock protein HSP20/alpha crystallin family protein 57521,18281,25362,26856,27725,18756,29089,28734,23441 Putative 57 kDa heat shock protein,Heat shock protein HSP20/alpha crystallin family,Heat shock protein HSP20/alpha crystallin family (Uncharacterized protein AT4g16540) (Uncharacterized protein dl4295c),Heat shock protein HSP20/alpha crystallin family (Uncharacterized protein At2g03020/T17M13.19),HSP20-like chaperone,Heat shock protein HSP20/alpha crystallin family protein locus:2130809;,locus:2130779;,locus:2056690;,locus:2130794; AT4G16560,AT4G16540,AT2G03020,AT4G16550 Inherit from euNOG: heat shock protein-related NA NA NA NA NA NA NA ENOG411ECNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1666) NA NA NA NA NA NA NA ENOG411ECNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain NA NA NA NA NA NA NA ENOG411ECNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Transcriptional activator tena NA NA NA NA NA NA NA ENOG411ECNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0130000 protein A0A0P0X1Y4 A0A0P0X1Y4_ORYSJ Os07g0130000 OSNPB_070130000 ENOG411ECNU Q9CA21 Q9CA21_ARATH Pleckstrin homology (PH) domain superfamily protein (Uncharacterized protein T32E8.6) 29890 Pleckstrin homology (PH) domain superfamily protein (Uncharacterized protein T32E8.6) locus:2203201; AT1G77730 PH domain NA NA NA NA NA NA NA ENOG411ECN2 F4JLJ2 F4JLJ2_ARATH Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) FUNCTION: Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide. {ECO:0000256|PIRNR:PIRNR028944}. R-ATH-1660662; 3.2.1.45 104351 Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) membrane [GO:0016020]; vacuole [GO:0005773]; glucosylceramidase activity [GO:0004348]; glucosylceramide catabolic process [GO:0006680] locus:2140588; AT4G10060 Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (By similarity) NA NA NA NA NA NA NA ENOG411ECN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411ECN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chitin recognition protein NA NA NA NA NA NA NA ENOG411ECN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECN7 ERF035 Q9M210 ERF35_ARATH Ethylene-responsive transcription factor ERF035 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 28216 Ethylene-responsive transcription factor ERF035 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2103301; AT3G60490 Transcription factor NA NA NA NA NA NA NA ENOG411ECN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411ECN5 SBT4.2 O23357,A0A1P8B448 SBT42_ARATH,A0A1P8B448_ARATH Subtilisin-like protease SBT4.2 (EC 3.4.21.-) (Subtilase subfamily 4 member 2) (AtSBT4.2),Subtilisin-like serine endopeptidase family protein 3.4.21.- 76561,72405 Subtilisin-like protease SBT4.2 (EC 3.4.21.-) (Subtilase subfamily 4 member 2) (AtSBT4.2),Subtilisin-like serine endopeptidase family protein extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252],serine-type endopeptidase activity [GO:0004252] locus:2129615; AT4G15040 Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411ECN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 81E1, putative, expressed (Os03g0760300 protein) (cDNA clone:006-208-E05, full insert sequence),Cytochrome P450 81E1, putative, expressed (Os03g0760000 protein) (cDNA clone:002-125-E04, full insert sequence) Q10DV1,Q10DI0 Q10DV1_ORYSJ,Q10DI0_ORYSJ LOC_Os03g55250 Os03g0760300 OSNPB_030760300,LOC_Os03g55230 Os03g0760000 OSNPB_030760000 ENOG411ECN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0141700 protein) (cDNA clone:J033115I21, full insert sequence),Os08g0134900 protein (cDNA clone:J013047E17, full insert sequence),Os08g0555400 protein,Os08g0132600 protein (cDNA clone:J013157I03, full insert sequence),Os08g0132100 protein,Os08g0132000 protein (Fragment),Os08g0132900 protein Q10RY5,Q6YYC8,Q6Z0S1,Q69R48,A0A0P0XBZ5,A0A0P0XBJ0,A0A0P0XBE8 Q10RY5_ORYSJ,Q6YYC8_ORYSJ,Q6Z0S1_ORYSJ,Q69R48_ORYSJ,A0A0P0XBZ5_ORYSJ,A0A0P0XBJ0_ORYSJ,A0A0P0XBE8_ORYSJ Os03g0141700 LOC_Os03g04830 Os03g0141700 OsJ_09357 OSNPB_030141700,Os08g0134900 OsJ_25953 OSNPB_080134900 P0509D04.41 P0680F05.34,P0439B07.15 Os08g0555400 OSNPB_080555400,Os08g0132600 OSJNBb0009H02.36 OSNPB_080132600,Os08g0132100 OSNPB_080132100,Os08g0132000 OSNPB_080132000,Os08g0132900 OSNPB_080132900 ENOG411E9UR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EID2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EID3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EID0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EID1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retroviral aspartyl protease NA NA NA NA NA NA NA ENOG411DWGV TAR2 Q94A02 TAR2_ARATH Tryptophan aminotransferase-related protein 2 (EC 2.6.1.27) (EC 2.6.1.99) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18394997}. This mutant does not have any obvious morphological defects and it responds normally to ACC and IAA in hypocotyl and root elongation assays.,This mutant does not have any obvious morphological defects and it responds normally to ACC and IAA.,These triple mutants do not make a primary root they have an extremely reduced hypocotyl and they lack discernible vasculature in their cotyledons. These mutants have a higher propensity to develop a single cotyledon than wild-type embryos.,The roots of this mutant show almost no sensitivity to the ethylene precursor ACC but sensitivity is largely restored by the addition of low levels of IAA (but not tryptophan). ACC-triggered dark-grown apical hook formation is also compromised in this mutant and it is not restored by the addition of IAA. Root gravitropism is more disrupted in this double mutant than in either single mutant. The mutant plants are shorter than wild type have reduced venation in their leaves exhibit reduced apical dominance and produce abnormal flowers. DR5:GUS expression is also diminished in these double mutants consistent with a ~50% reduction in IAA levels in these mutants. Root meristematic cells differentiate in this mutant leading to a loss of the stem cell niche and the cessation of root growth.,ACC-triggered dark-grown apical hook formation is compromised in this mutant. Root meristematic cells differentiate in this mutant leading to a loss of the stem cell niche and the cessation of root growth. This mutant also lacks valves in the gynoecia. FUNCTION: Involved in auxin production. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches. {ECO:0000269|PubMed:18394997}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. 2.6.1.27; 2.6.1.99 50007 Tryptophan aminotransferase-related protein 2 (EC 2.6.1.27) (EC 2.6.1.99) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; carbon-sulfur lyase activity [GO:0016846]; L-tryptophan:2-oxoglutarate aminotransferase activity [GO:0050362]; L-tryptophan:pyruvate aminotransferase activity [GO:0080097]; auxin biosynthetic process [GO:0009851]; cellular response to nitrogen levels [GO:0043562]; defense response to bacterium [GO:0042742]; flower development [GO:0009908]; gynoecium development [GO:0048467]; lateral root development [GO:0048527]; maintenance of root meristem identity [GO:0010078]; phloem or xylem histogenesis [GO:0010087]; positive gravitropism [GO:0009958]; response to ethylene [GO:0009723]; shoot system development [GO:0048367] DEVELOPMENTAL STAGE: In early-stage flowers, expressed in all floral organs. Becomes later restricted to the gynoecia, preferentially to the outer cell layers that give rise to the valves. No expression in flowers at anthesis. {ECO:0000269|PubMed:18394997}. TISSUE SPECIFICITY: Expressed in roots, cotyledons and in the apical parts of hypocotyls. In roots, restricted to the provasculature of meristematic regions. Detected on the inner side of the apical hooks. {ECO:0000269|PubMed:18394997}. locus:2121999; AT4G24670 tryptophan aminotransferase-related protein 2-like Os05g0169300 protein (cDNA clone:J023113A03, full insert sequence),Fish bone (Os01g0169800 protein) (Putative alliinase),Os05g0169300 protein (Fragment) Q0DKE8,Q5VQG8,A0A0P0WIM5 Q0DKE8_ORYSJ,Q5VQG8_ORYSJ,A0A0P0WIM5_ORYSJ Os05g0169300 Os05g0169300 OSNPB_050169300,Os01g0169800 FIB OJ1276_B06.34 OSNPB_010169800,Os05g0169300 OSNPB_050169300 ENOG411DWGW F4P13.30 Q9S7I4 Q9S7I4_ARATH Ankyrin repeat family protein (F28J7.8 protein) (F4P13.30 protein) (Uncharacterized protein At3g01750) 73133 Ankyrin repeat family protein (F28J7.8 protein) (F4P13.30 protein) (Uncharacterized protein At3g01750) locus:2082344; AT3G01750 ANK Os08g0369400 protein (Fragment),Os05g0298200 protein,Os09g0537800 protein,Ankyrin repeat-like protein (Os02g0601700 protein) (cDNA clone:J013151O17, full insert sequence),Os03g0695400 protein (Fragment),Os05g0298200 protein (Fragment) C7J5S2,Q0DJD7,A3C108,Q6K5G3,Q0DPF0,A0A0N7KKH2 C7J5S2_ORYSJ,Q0DJD7_ORYSJ,A3C108_ORYSJ,Q6K5G3_ORYSJ,Q0DPF0_ORYSJ,A0A0N7KKH2_ORYSJ Os08g0369400 Os08g0369400 OSNPB_080369400,Os05g0298200 Os05g0298200 OSNPB_050298200,Os09g0537800 OsJ_30153 OSNPB_090537800,Os02g0601700 Os02g0601700 OJ1669_F01.3 OJ1791_B03.41 OSNPB_020601700,Os03g0695400 Os03g0695400 OSNPB_030695400,Os05g0298200 OSNPB_050298200 ENOG411DWGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os01g0914600 protein (Selenium-binding protein-like) Q8LQG2 Q8LQG2_ORYSJ Os01g0914600 Os01g0914600 OSNPB_010914600 P0004D12.10 ENOG411DWGU Q0V7V2 P2C42_ARATH Probable protein phosphatase 2C 42 (AtPP2C42) (EC 3.1.3.16) 3.1.3.16 42489 Probable protein phosphatase 2C 42 (AtPP2C42) (EC 3.1.3.16) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2086097; AT3G17090 phosphatase 2C Probable protein phosphatase 2C 36 (OsPP2C36) (EC 3.1.3.16) Q7Y138 P2C36_ORYSJ Os03g0832400 LOC_Os03g61690 OsJ_13243 OSJNBa0078D06.30 ENOG411DWGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Phospholipase D (EC 3.1.4.4),Os03g0840800 protein Q8LGW5,A0A0P0W593 Q8LGW5_ORYSJ,A0A0P0W593_ORYSJ P0046D03.106 Os07g0260400 OsJ_23763 OSNPB_070260400,Os03g0840800 OSNPB_030840800 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ENOG411DWGS FIP1 Q8S8K9,Q0WP45,A0A1P8AZC6,A0A1P8AZA8,A0A1P8AZA6,A0A1P8AZA1,F4K5K3,F4IIB8 Q8S8K9_ARATH,Q0WP45_ARATH,A0A1P8AZC6_ARATH,A0A1P8AZA8_ARATH,A0A1P8AZA6_ARATH,A0A1P8AZA1_ARATH,F4K5K3_ARATH,F4IIB8_ARATH Expressed protein (FRIGIDA interacting protein 1),TMEM192 family protein (Uncharacterized protein At5g20580),FRIGIDA interacting protein 1,TMEM192 family protein 40586,39723,35448,34613,30196,27960,39769,33933 Expressed protein (FRIGIDA interacting protein 1),TMEM192 family protein (Uncharacterized protein At5g20580),FRIGIDA interacting protein 1,TMEM192 family protein integral component of membrane [GO:0016021] locus:505006239;,locus:2149937; AT2G06005,AT5G20580 NA Os02g0778300 protein (cDNA clone:J023055F23, full insert sequence),Os02g0778300 protein (cDNA clone:001-016-A12, full insert sequence) Q6ZGC0,Q6ZGC1 Q6ZGC0_ORYSJ,Q6ZGC1_ORYSJ OJ1534_E09.24-2 Os02g0778300 OJ1293_A01.1-2 OSNPB_020778300,OJ1534_E09.24-1 Os02g0778300 OJ1293_A01.1-1 OsJ_08591 OSNPB_020778300 ENOG411DWGP Q8LBI9 EDL16_ARATH Sugar transporter ERD6-like 16 FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 51992 Sugar transporter ERD6-like 16 integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428] locus:2144975; AT5G18840 sugar transporter ERD6-like Os03g0363600 protein (Sugar transporter family protein, expressed) Q10L05 Q10L05_ORYSJ Os03g0363600 LOC_Os03g24870 Os03g0363600 OSNPB_030363600 ENOG411DWGQ grpE,EMB1241 Q9XQC7,Q94K56 Q9XQC7_ARATH,Q94K56_ARATH GrpE protein homolog Embryo defective; Preglobular / Globular-D. Meinke-2003 FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. {ECO:0000256|RuleBase:RU000640}. 35721,35494 GrpE protein homolog chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrial matrix [GO:0005759]; thylakoid [GO:0009579]; adenyl-nucleotide exchange factor activity [GO:0000774]; chaperone binding [GO:0051087]; copper ion binding [GO:0005507]; protein homodimerization activity [GO:0042803]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457],mitochondrial matrix [GO:0005759]; adenyl-nucleotide exchange factor activity [GO:0000774]; chaperone binding [GO:0051087]; protein homodimerization activity [GO:0042803]; protein folding [GO:0006457] locus:2175926; AT5G17710 Essential component of the PAM complex a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (By similarity) GrpE protein homolog (Fragment) A0A0P0VLJ4 A0A0P0VLJ4_ORYSJ Os02g0612000 OSNPB_020612000 FUNCTION: Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. {ECO:0000256|RuleBase:RU000640}. ENOG411DWGZ DHAR3 Q8LE52 DHAR3_ARATH Glutathione S-transferase DHAR3, chloroplastic (EC 2.5.1.18) (Chloride intracellular channel homolog 3) (CLIC homolog 3) (Glutathione-dependent dehydroascorbate reductase 3) (AtDHAR3) (ChlDHAR) (GSH-dependent dehydroascorbate reductase 3) FUNCTION: Displays a dual function. As a soluble protein, exhibits glutathione-dependent thiol transferase and dehydroascorbate (DHA) reductase activities (PubMed:12077129). Key component of the ascorbate recycling system. Involved in the redox homeostasis, especially in scavenging of ROS under oxidative stresses (By similarity). {ECO:0000250|UniProtKB:Q9FWR4, ECO:0000269|PubMed:12077129}. ARA:AT5G16710-MONOMER; 2.5.1.18 28514 Glutathione S-transferase DHAR3, chloroplastic (EC 2.5.1.18) (Chloride intracellular channel homolog 3) (CLIC homolog 3) (Glutathione-dependent dehydroascorbate reductase 3) (AtDHAR3) (ChlDHAR) (GSH-dependent dehydroascorbate reductase 3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; glutathione dehydrogenase (ascorbate) activity [GO:0045174]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; protein glutathionylation [GO:0010731]; response to cytokinin [GO:0009735] locus:2149015; AT5G16710 Glutathione S-transferase N-terminal domain Probable glutathione S-transferase DHAR2, chloroplastic (EC 2.5.1.18) (GSH-dependent dehydroascorbate reductase 2) (OsDHAR2) (EC 1.8.5.1) (Glutathione-dependent dehydroascorbate reductase 2) Q67UK9 DHAR2_ORYSJ DHAR2 Os06g0232600 LOC_Os06g12630 OsJ_20706 P0479H10.23 FUNCTION: Involved in ascorbate homeostasis. Maintains redox pools of ascorbate by recycling dihydroascorbate (DHA) to ascorbate. Involved in scavenging reactive oxygen species (ROS) under oxidative stresses. {ECO:0000250|UniProtKB:Q65XA0}. ENOG411DWGX MCM23.1 Q67Z79 Q67Z79_ARATH MIF4G domain-containing protein / MA3 domain-containing protein (Uncharacterized protein At5g17930) 90007 MIF4G domain-containing protein / MA3 domain-containing protein (Uncharacterized protein At5g17930) nucleolus [GO:0005730]; RNA binding [GO:0003723]; ribosomal small subunit biogenesis [GO:0042274] locus:2161548; AT5G17930 nucleolar MIF4G domain-containing protein 1-like Os05g0147200 protein (Fragment),Os05g0147150 protein (Fragment) A0A0P0WHV8,A0A0P0WI69 A0A0P0WHV8_ORYSJ,A0A0P0WI69_ORYSJ Os05g0147200 OSNPB_050147200,Os05g0147150 OSNPB_050147150 ENOG411DWGY CYP28 O65220,A0A1P8B9P2 CPY28_ARATH,A0A1P8B9P2_ARATH Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic (PPIase CYP28) (EC 5.2.1.8) (Cyclophilin of 28 kDa) (Cyclophilin-28),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 30505,31386 Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic (PPIase CYP28) (EC 5.2.1.8) (Cyclophilin of 28 kDa) (Cyclophilin-28),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein chloroplast [GO:0009507]; thylakoid lumen [GO:0031977]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. Not detected in roots. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2150371; AT5G35100 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) Os08g0292600 protein (cDNA clone:J023011I02, full insert sequence),Os08g0292600 protein (cDNA clone:J023111F24, full insert sequence) Q84YY4,B7F722 Q84YY4_ORYSJ,B7F722_ORYSJ Os08g0292600 Os08g0292600 OJ1705_A03.1 OSJNBb0075O18.114 OSNPB_080292600,Os08g0292600 OSNPB_080292600 ENOG411DWGF Q8H128,Q9FI41,A0A1P8BFB0,A8MRX7 Q8H128_ARATH,Q9FI41_ARATH,A0A1P8BFB0_ARATH,A8MRX7_ARATH FMN-linked oxidoreductases superfamily protein (Uncharacterized protein At3g63510),tRNA-dihydrouridine synthase (EC 1.3.1.-),Aldolase-type TIM barrel family protein FUNCTION: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000256|PIRNR:PIRNR006621}. 1.3.1.- 46375,43148,30626,42257 FMN-linked oxidoreductases superfamily protein (Uncharacterized protein At3g63510),tRNA-dihydrouridine synthase (EC 1.3.1.-),Aldolase-type TIM barrel family protein flavin adenine dinucleotide binding [GO:0050660]; tRNA dihydrouridine synthase activity [GO:0017150],cytoplasm [GO:0005737]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; flavin adenine dinucleotide binding [GO:0050660]; tRNA dihydrouridine synthase activity [GO:0017150] locus:2087408;,locus:2152758; AT3G63510,AT5G47970 Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity) Os04g0278900 protein,tRNA-dihydrouridine synthase (EC 1.3.1.-) B9FE76,Q0JEG3 B9FE76_ORYSJ,Q0JEG3_ORYSJ Os04g0278900 OsJ_14110 OSNPB_040278900,Os04g0278900 Os04g0278900 OSNPB_040278900 FUNCTION: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000256|PIRNR:PIRNR006621}. ENOG411DWGG RIBA3 Q9FN89,A0A1P8BHH7,F4KJA1 RIBA3_ARATH,A0A1P8BHH7_ARATH,F4KJA1_ARATH Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic [Includes: Inactive 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)],Monofunctional riboflavin biosynthesis protein RIBA 3 FUNCTION: Involved in riboflavin biosynthesis. Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate. RIBA2 and RIBA3 together are not able to complement the loss of function of RIBA1. {ECO:0000269|PubMed:22081402, ECO:0000269|PubMed:23203051}. PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4. ARA:AT5G59750-MONOMER; 3.5.4.25 56146,49036,60177 Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic [Includes: Inactive 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)],Monofunctional riboflavin biosynthesis protein RIBA 3 chloroplast [GO:0009507]; 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [GO:0008686]; GTP binding [GO:0005525]; GTP cyclohydrolase II activity [GO:0003935]; metal ion binding [GO:0046872]; riboflavin biosynthetic process [GO:0009231],3,4-dihydroxy-2-butanone-4-phosphate synthase activity [GO:0008686]; GTP cyclohydrolase II activity [GO:0003935]; riboflavin biosynthetic process [GO:0009231],chloroplast [GO:0009507]; 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [GO:0008686]; GTP cyclohydrolase II activity [GO:0003935]; riboflavin biosynthetic process [GO:0009231] TISSUE SPECIFICITY: Expressed in leaves, shoots, roots, flowers and siliques. {ECO:0000269|PubMed:23203051}. locus:2174299; AT5G59750 riboflavin biosynthesis protein Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic [Includes: Inactive 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)],Os05g0460600 protein Q6L506,A0A0P0WNB3 RIBA3_ORYSJ,A0A0P0WNB3_ORYSJ RIBA3 Os05g0460600 OJ1281_H05.8 OsJ_18816,Os05g0460600 OSNPB_050460600 FUNCTION: Involved in riboflavin biosynthesis. Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate (By similarity). {ECO:0000250}. ENOG411DWGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0617200 protein (Fragment) A0A0P0VLK7 A0A0P0VLK7_ORYSJ Os02g0617200 OSNPB_020617200 ENOG411DWGE PCO4,PCO5 Q9SJI9,Q9LXT4,A0A1P8B2S7,A0A1I9LQA0 PCO4_ARATH,PCO5_ARATH,A0A1P8B2S7_ARATH,A0A1I9LQA0_ARATH Plant cysteine oxidase 4 (EC 1.13.11.20),Plant cysteine oxidase 5 (EC 1.13.11.20),2-aminoethanethiol dioxygenase, putative (DUF1637) FUNCTION: Oxidizes N-terminal cysteine residues, thus preparing the protein for N-end rule pathway-mediated proteasomal degradation. {ECO:0000305|PubMed:24599061}. R-ATH-1614558; 1.13.11.20 27183,27223,19834,22467 Plant cysteine oxidase 4 (EC 1.13.11.20),Plant cysteine oxidase 5 (EC 1.13.11.20),2-aminoethanethiol dioxygenase, putative (DUF1637) cytoplasm [GO:0005737]; nucleus [GO:0005634]; cysteine dioxygenase activity [GO:0017172]; metal ion binding [GO:0046872],oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702] locus:2041524;,locus:2098984; AT2G42670,AT3G58670 2-aminoethanethiol dioxygenase-like Os04g0151900 protein (Fragment) A0A0P0W6N2 A0A0P0W6N2_ORYSJ Os04g0151900 OSNPB_040151900 ENOG411DWGB Q1PDT4,Q9LYF7 Q1PDT4_ARATH,Q9LYF7_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase),At5g11730 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At5g11730) (Uncharacterized protein T22P22_120) 44326,44268 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase),At5g11730 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein At5g11730) (Uncharacterized protein T22P22_120) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2180552;,locus:2181945; AT5G25970,AT5G11730 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411DWGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein OSB2 chloroplastic-like Os03g0633900 protein (Putative single-strand binding protein) (Single-strand binding protein, expressed) (cDNA clone:001-023-G01, full insert sequence) (cDNA clone:J013129H11, full insert sequence) Q75GK2 Q75GK2_ORYSJ Os03g0633900 LOC_Os03g43420 Os03g0633900 OsJ_11823 OSJNBa0010N03.15 OSNPB_030633900 ENOG411DWGN GWD1 Q9SAC6 GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic (EC 2.7.9.4) (Protein starch excess 1) (Protein starch-related R1) Glucose 3-phosphate level is about one-fourth of that of wild type.,Glucose 6-phosphate level is about one-fourth of that of wild type.,Slight increase in the number of short chains (DP 10 to 24) and decrease in that of longer chains (DP 31 to 46) in mutant starch.,impaired freezing tolerance,starch overproducer.,Glucose 6-phosphate level is below detection limits.,Glucose 3-phosphate level is below detection limits.,Starch content similar to that observed in the sex1-3 single mutant and different from that of sex4-5. At the end of the light period the starch content of the double mutant was 1.7-fold that of sex4-5 and not different from that of sex1-3. At the end of the dark period its starch content was twice that of sex4-5 and 80% of that of sex1-3.,Glucose 6-phosphate levels are very close to the detection limits. It can therefore not be excluded that a low residual Glc6P content is present. Elevated starch in leaves after prolonged darkness-A. Weber-2001 FUNCTION: Mediates the incorporation of phosphate into starch-like alpha-glucan, mostly at the C-6 position of glucose units. Acts as an overall regulator of starch mobilization. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability. {ECO:0000269|PubMed:11487701}. MISCELLANEOUS: The reaction takes place in three steps, mediated by a phosphocarrier histidine residue located on the surface of the central domain. The two first partial reactions are catalyzed at an active site located on the C-terminal domain, and the third partial reaction is catalyzed at an active site located on the N-terminal domain. For catalytic turnover, the central domain swivels from the concave surface of the C-terminal domain to that of the N-terminal domain (By similarity). {ECO:0000250}. ARA:AT1G10760-MONOMER;MetaCyc:AT1G10760-MONOMER; 2.7.9.4 156582 Alpha-glucan water dikinase 1, chloroplastic (EC 2.7.9.4) (Protein starch excess 1) (Protein starch-related R1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; alpha-glucan, water dikinase activity [GO:0050521]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; cold acclimation [GO:0009631]; response to symbiotic fungus [GO:0009610]; starch catabolic process [GO:0005983] DEVELOPMENTAL STAGE: The level of protein does not vary in a circadian rhythm and is stable throughout day and night (at protein level). {ECO:0000269|PubMed:11487701}. locus:2019953; AT1G10760 alpha-glucan water dikinase Os06g0498400 protein (Fragment),Os06g0474866 protein (Fragment) Q0DC10,A0A0P0WWZ9,A0A0P0WWR8 Q0DC10_ORYSJ,A0A0P0WWZ9_ORYSJ,A0A0P0WWR8_ORYSJ Os06g0498400 Os06g0498400 OSNPB_060498400,Os06g0498400 OSNPB_060498400,Os06g0474866 OSNPB_060474866 ENOG411DWGJ RFNR2,RFNR1 Q9S9P8,Q9M0V6,F4JGF4 FNRR2_ARATH,FNRR1_ARATH,F4JGF4_ARATH Ferredoxin--NADP reductase, root isozyme 2, chloroplastic (EC 1.18.1.2) (Root FNR 2) (AtRFNR2),Ferredoxin--NADP reductase, root isozyme 1, chloroplastic (EC 1.18.1.2) (Root FNR 1) (AtRFNR1),Ferredoxin--NADP reductase (EC 1.18.1.2) FUNCTION: Maintains the supply of reduced ferredoxin under non-photosynthetic conditions. {ECO:0000269|Ref.5}. ARA:AT1G30510-MONOMER;,ARA:AT4G05390-MONOMER; 1.18.1.2 42789,42396,39324 Ferredoxin--NADP reductase, root isozyme 2, chloroplastic (EC 1.18.1.2) (Root FNR 2) (AtRFNR2),Ferredoxin--NADP reductase, root isozyme 1, chloroplastic (EC 1.18.1.2) (Root FNR 1) (AtRFNR1),Ferredoxin--NADP reductase (EC 1.18.1.2) chloroplast [GO:0009507]; copper ion binding [GO:0005507]; ferredoxin-NADP+ reductase activity [GO:0004324]; photosynthesis [GO:0015979],ferredoxin-NADP+ reductase activity [GO:0004324] TISSUE SPECIFICITY: Expressed in shoots and roots. More abundant in roots than RFNR1. {ECO:0000269|Ref.5}.,TISSUE SPECIFICITY: Expressed in shoots and roots. Less abundant in roots than RFNR2. {ECO:0000269|Ref.5}. locus:2028145;,locus:2115964; AT1G30510,AT4G05390 ferredoxin--NADP reductase Ferredoxin--NADP reductase, embryo isozyme, chloroplastic (FNR) (EC 1.18.1.2),Ferredoxin--NADP reductase, root isozyme, chloroplastic (FNR) (EC 1.18.1.2),Os07g0147900 protein (Fragment) O23877,P41345,A0A0P0X2Y8 FENR3_ORYSJ,FENRO_ORYSJ,A0A0P0X2Y8_ORYSJ Os07g0147900 LOC_Os07g05400 OsJ_23093 P0022E03.21-1,Os03g0784700 LOC_Os03g57120 OsJ_12850 OSJNBb0093E13.2,Os07g0147900 OSNPB_070147900 FUNCTION: May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. Is involved in nitrate assimilation. ENOG411DWGK SGF29a,SGF29b Q8RXY6,Q500Z7,A0A1P8BA25,A0A1P8BA21,A0A1I9LNK9,A0A1I9LNL1,A0A1I9LNL0,F4IWI8,F4KHE9 Q8RXY6_ARATH,Q500Z7_ARATH,A0A1P8BA25_ARATH,A0A1P8BA21_ARATH,A0A1I9LNK9_ARATH,A0A1I9LNL1_ARATH,A0A1I9LNL0_ARATH,F4IWI8_ARATH,F4KHE9_ARATH SGF29 tudor-like domain-containing protein (Uncharacterized protein At3g27460),At5g40550 (SGF29 tudor-like domain-containing protein) (Uncharacterized protein At5g40550),SGF29 tudor-like domain-containing protein Fewer, smaller rosette leaves and late flowering under short days-K. Vlachonasios-2011 FUNCTION: Chromatin reader component of the transcription regulatory histone acetylation (HAT) complexe SAGA (By similarity). Involved in salt stress tolerance. Enhances the effect of ADA2B in the positive regulation of salt-induced gene expression (PubMed:21193996). {ECO:0000250|UniProtKB:Q96ES7, ECO:0000269|PubMed:21193996}.,FUNCTION: Chromatin reader component of the transcription regulatory histone acetylation (HAT) complexe SAGA. {ECO:0000250|UniProtKB:Q96ES7}. 30499,30885,34140,33871,28451,28281,30670,30370,30616 SGF29 tudor-like domain-containing protein (Uncharacterized protein At3g27460),At5g40550 (SGF29 tudor-like domain-containing protein) (Uncharacterized protein At5g40550),SGF29 tudor-like domain-containing protein nucleus [GO:0005634]; response to salt stress [GO:0009651],histone H3 acetylation [GO:0043966]; histone H4 acetylation [GO:0043967]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; valine-tRNA ligase activity [GO:0004832]; valyl-tRNA aminoacylation [GO:0006438] locus:2086711;,locus:2168793; AT3G27460,AT5G40550 Factor 29 Expressed protein (Os12g0290600 protein) (cDNA clone:J033063H10, full insert sequence) Q2QTK4 Q2QTK4_ORYSJ Os12g0290600 LOC_Os12g19350 OSNPB_120290600 ENOG411DWGH Q9FRK5,Q9LN61 Y1514_ARATH,Q9LN61_ARATH Uncharacterized membrane protein At1g75140,F18O14.9 (Membrane protein) 68909,67528 Uncharacterized membrane protein At1g75140,F18O14.9 (Membrane protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2025157;,locus:2016497; AT1G75140,AT1G19370 NA Os06g0115200 protein,Os02g0690000 protein (Fragment) Q8H668,A0A0P0VN71 Q8H668_ORYSJ,A0A0P0VN71_ORYSJ Os06g0115200 OSJNBa0019F11.13 OSNPB_060115200 P0541H01.35,Os02g0690000 OSNPB_020690000 ENOG411DWGI IDM3 Q9SYQ0 IDM3_ARATH Increased DNA methylation 3 (Alpha-crystallin domain-containing protein 51.9) (AtAcd51.9) FUNCTION: Acts as an anti-silencing factor that prevents DNA hypermethylation and gene repression (PubMed:25684209). {ECO:0000269|PubMed:25684209}. 51932 Increased DNA methylation 3 (Alpha-crystallin domain-containing protein 51.9) (AtAcd51.9) nucleus [GO:0005634]; positive regulation of DNA demethylation [GO:1901537]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2037380; AT1G20870 NA NA NA NA NA NA NA NA ENOG411DWG6 Q9T050,Q93ZQ5,Q2V4F9,F4JMQ7,A0A1P8B5Q1,F4I0G4,F4I0G7 SPXM2_ARATH,SPXM3_ARATH,SPXM1_ARATH,F4JMQ7_ARATH,A0A1P8B5Q1_ARATH,F4I0G4_ARATH,F4I0G7_ARATH SPX domain-containing membrane protein At4g11810,SPX domain-containing membrane protein At4g22990,SPX domain-containing membrane protein At1g63010,Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 79419,78449,78051,78578,78612,78223,79273 SPX domain-containing membrane protein At4g11810,SPX domain-containing membrane protein At4g22990,SPX domain-containing membrane protein At1g63010,Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; phosphate ion transport [GO:0006817]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; transmembrane transport [GO:0055085]; vacuolar phosphate transport [GO:0007037],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; phosphate ion transmembrane transporter activity [GO:0015114]; phosphate ion homeostasis [GO:0055062]; phosphate ion transport [GO:0006817]; transmembrane phosphate ion transport from cytosol to vacuole [GO:1905011] locus:2137075;,locus:2127268;,locus:2015158; AT4G11810,AT4G22990,AT1G63010 SPX domain-containing membrane protein SPX domain-containing membrane protein Os04g0573000,SPX domain-containing membrane protein Os06g0129400,SPX domain-containing membrane protein Os02g45520 Q0JAW2,Q658H5,Q6EPQ3 SPXM2_ORYSJ,SPXM3_ORYSJ,SPXM1_ORYSJ Os04g0573000 LOC_Os04g48390 OsJ_15847 OSJNBa0019K04.6,Os06g0129400 LOC_Os06g03860 OsJ_19983 P0538C01.18,Os02g0678200 LOC_Os02g45520 OsJ_07922 OSJNBb0005A04.25 P0663F07.1 ENOG411DWG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 Os08g0476600 protein Q6ZG48 Q6ZG48_ORYSJ OJ1111_E05.14 Os08g0476600 OSNPB_080476600 ENOG411DWG4 CLF,EZA1,SWN P93831,Q9ZSM8,A0A1P8B4N3,A0A1P8B187,A0A1P8B4N2 CLF_ARATH,EZA1_ARATH,A0A1P8B4N3_ARATH,A0A1P8B187_ARATH,A0A1P8B4N2_ARATH Histone-lysine N-methyltransferase CLF (EC 2.1.1.43) (Polycomb group protein CURLY LEAF) (Protein INCURVATA 1) (Protein SET DOMAIN GROUP 1) (Protein photoperiod insensitive flowering),Histone-lysine N-methyltransferase EZA1 (EC 2.1.1.43) (CURLY LEAF-like 1) (Protein SET DOMAIN GROUP 10) (Protein SWINGER),Histone-lysine N-methyltransferase (EC 2.1.1.43) Curling of both rosette and cauline leaves and reduction in petal size in the second whorl.,clf leaf phenotype but partially suppressed the early flowering phenotype.,The enhancement of the second-whorl phenotypes in these double mutants resulted from AG misexpression.,leaf curling similar to that in clf-2. Both clf-2 and clf-2 rbe-3 produced an average of 4.0 second-whorl organs per flower. In clf-2 mutants these were almost exclusively small petals whereas the average number of small petals in clf-2 rbe-3 was 1.37. Second-whorl petals were most often replaced by spoonshaped petals staminoid petals petaloid stamens or stamens.,lants are extremely small with a reduced number of leaves leaves are sessile and the inflorescences are completely arrested. Cotyledons are relatively well expanded.Enhanced de-repression of KNOX gene expression.,clf-2 phenotype is rescued by ult1-3 allele. Altered leaf morphology-G. Coupland-1997 FUNCTION: Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. Required to regulate floral development by repressing the AGAMOUS homeotic gene in leaves, influorescence stems and flowers. Regulates the antero-posterior organization of the endosperm, as well as the division and elongation rates of leaf cells. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. {ECO:0000269|PubMed:11063708, ECO:0000269|PubMed:11250158, ECO:0000269|PubMed:9052779, ECO:0000269|PubMed:9736998}.,FUNCTION: Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development (By similarity). {ECO:0000250}. R-ATH-212300;R-ATH-2559580; 2.1.1.43 100370,95396,89109,75129,89987 Histone-lysine N-methyltransferase CLF (EC 2.1.1.43) (Polycomb group protein CURLY LEAF) (Protein INCURVATA 1) (Protein SET DOMAIN GROUP 1) (Protein photoperiod insensitive flowering),Histone-lysine N-methyltransferase EZA1 (EC 2.1.1.43) (CURLY LEAF-like 1) (Protein SET DOMAIN GROUP 10) (Protein SWINGER),Histone-lysine N-methyltransferase (EC 2.1.1.43) nucleus [GO:0005634]; PcG protein complex [GO:0031519]; histone-lysine N-methyltransferase activity [GO:0018024]; single-stranded RNA binding [GO:0003727]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; DNA mediated transformation [GO:0009294]; flower development [GO:0009908]; histone methylation [GO:0016571]; leaf morphogenesis [GO:0009965]; negative regulation of molecular function, epigenetic [GO:0045857]; regulation of gene expression by genetic imprinting [GO:0006349]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228],chromatin silencing complex [GO:0005677]; nucleus [GO:0005634]; PcG protein complex [GO:0031519]; plasmodesma [GO:0009506]; histone-lysine N-methyltransferase activity [GO:0018024]; single-stranded RNA binding [GO:0003727]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of gene expression by genetic imprinting [GO:0006349]; transcription, DNA-templated [GO:0006351],PcG protein complex [GO:0031519]; histone-lysine N-methyltransferase activity [GO:0018024] DEVELOPMENTAL STAGE: Expressed in all four whorls throughout flower development. TISSUE SPECIFICITY: Strongly expressed throughout the apical meristem, leaf primordia, and leaves of 7-8 day-old seedling. Weakly expressed in the vasculature of hypocotyl. Strongly expressed throughout the young stages 1 and 2 floral meristems that arose on the flanks of the apex. In stage 3 and 4 flowers, it is expressed in the emerging sepal primordia and in the dome of the floral meristem. During stages 6 and 7, it is strongly expressed in developing petal and stamen, and weakly expressed in the sepals. Late in floral development, at stage 12, it is weakly expressed in all floral whorls, and expressed at intermediate level in petals and ovules. {ECO:0000269|PubMed:9052779}. locus:2005501;,locus:2132178; AT2G23380,AT4G02020 Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex which methylates 'Lys-27' of histone H3 leading to transcriptional repression of the affected target genes Histone-lysine N-methyltransferase (EC 2.1.1.43) Q5VN06,Q10MI4 Q5VN06_ORYSJ,Q10MI4_ORYSJ Os06g0275500 Os06g0275500 OSNPB_060275500 P0038C05.29 P0676F10.40,Os03g0307800 LOC_Os03g19480 Os03g0307800 OsJ_10569 OSNPB_030307800 ENOG411DWG5 FIE Q9LT47 FIE_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM (Protein FERTILIZATION-INDEPENDENT SEED 3) Initiation of seed development in absence of fertilization; 50% defective seeds-R. Fischer-1999 FUNCTION: Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Required to prevent the proliferation of the central cell by repressing unknown target genes before fertilization. Probably also involved in floral repression mechanism established during early plant development. Regulates the anteroposterior organization of the endosperm. Interacts with the promoter and represses the transcription of genes such as PHE1, that are paternally active and maternally silenced. {ECO:0000269|PubMed:10072400, ECO:0000269|PubMed:11250158, ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:15151989}. R-ATH-212300;R-ATH-2559580; 41257 Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM (Protein FERTILIZATION-INDEPENDENT SEED 3) chromatin silencing complex [GO:0005677]; polar nucleus [GO:0043078]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; histone methylation [GO:0016571]; multicellular organism development [GO:0007275]; regulation of endosperm development [GO:2000014]; regulation of gene expression by genetic imprinting [GO:0006349]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed maternally and zygotically. Expressed in both egg and central cell before fertilization, and in the embryo and endosperm after fertilization. TISSUE SPECIFICITY: Expressed in cauline leaves, root and stems. In the male reproductive organ, it is expressed in the developing anther; and is abundant in microspore mother cells, in microsporocytes and in the tapetum, but is absent from vascular bundles, the connective tissue and the filament. It is also absent from pollen grains at subsequent developmental stages. In the developing female reproductive organs, it is highly expressed in all cells of the young ovules primordium before archesporial differentiation. Then, it is highly expressed in the ovule sporophytic tissue and the megaspore mother cell before meiosis, but is absent from placenta or the developing carpel. Then, it decreases. {ECO:0000269|PubMed:10072400, ECO:0000269|PubMed:10962025, ECO:0000269|PubMed:11114524, ECO:0000269|PubMed:11148284}. locus:2091876; AT3G20740 polycomb group protein Os08g0137100 protein (Putative Polycomb group protein FIE2) (cDNA clone:J023058F21, full insert sequence),Os08g0137250 protein (Putative Polycomb group protein FIE2) (cDNA, clone: J075166M12, full insert sequence) Q6ZJX0,Q6ZJW8 Q6ZJX0_ORYSJ,Q6ZJW8_ORYSJ Os08g0137100 Os08g0137100 OJ1613_G04.20 OsJ_25971 OSNPB_080137100,Os08g0137250 OJ1613_G04.22 OsJ_25973 OSNPB_080137250 ENOG411DWG2 BAG6 O82345 BAG6_ARATH BAG family molecular chaperone regulator 6 (Bcl-2-associated athanogene 6) (CaM-binding protein 1) [Cleaved into: Cleaved BAG6] DISRUPTION PHENOTYPE: Early flowering and shorter vegetative and reproductive phases, with more branched roots and inflorescences (PubMed:16636050). Early senescence (PubMed:16636050). Hypersensitivity to light (PubMed:16636050). Enhanced susceptibility to B.cinerea and permissive fungal growth (PubMed:16636050, PubMed:26739014). {ECO:0000269|PubMed:16636050, ECO:0000269|PubMed:26739014}. Mutant plants exhibited dramatically enhanced susceptibility to fungal pathogen Botrytis cinerea both in terms of severity of lesions and rate of spread.,Mutant plants exhibited earlier flowering and shorter vegetative and reproductive phases producing more branched roots and inflorescences compared to wild-type plants. Senescence occurred earlier in mutants than the wild-type plants. Heterozygotes: Increased branching and lateral root number; Early flowering and senescence; Incomplete penetrance of purple leaves; Homozygotes not mentioned-M. Dickman-2006 FUNCTION: Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses (PubMed:16003391). Involved in plant basal resistance (PubMed:16636050, PubMed:26739014). Involved in basal heat response through the regulation of the heat induced small HSP (sHSP) transcriptional cascade (PubMed:26580143). {ECO:0000269|PubMed:16003391, ECO:0000269|PubMed:16636050, ECO:0000269|PubMed:26580143, ECO:0000269|PubMed:26739014}.; FUNCTION: Cleaved BAG6: Induces autophagy. {ECO:0000269|PubMed:26739014}. MISCELLANEOUS: Overexpression of BAG6 results in a lesion mimic phenotype. Processed by APCB1 during lesion mimic development. The cleavage is triggered by pathogen infection or by pathogen-associated molecular patterns (PAMPs). {ECO:0000269|PubMed:26739014}. 116758 BAG family molecular chaperone regulator 6 (Bcl-2-associated athanogene 6) (CaM-binding protein 1) [Cleaved into: Cleaved BAG6] plasmodesma [GO:0009506]; calmodulin binding [GO:0005516]; chaperone binding [GO:0051087]; autophagy [GO:0006914]; defense response to fungus [GO:0050832]; defense response to fungus, incompatible interaction [GO:0009817]; induction of programmed cell death [GO:0012502]; positive regulation of autophagy [GO:0010508]; protein folding [GO:0006457]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Detected in stems, leaves, flowers and roots. {ECO:0000269|PubMed:16636050}. locus:2062887; AT2G46240 BAG domain Os02g0259850 protein (Fragment) A0A0P0VHA1 A0A0P0VHA1_ORYSJ Os02g0259850 OSNPB_020259850 ENOG411DWG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA basic helix-loop-helix DND-binding domain containing protein expressed BHLH transcription factor (Os02g0116600 protein) (Putative bHLH protein) (cDNA clone:001-035-A10, full insert sequence) (cDNA clone:006-303-B03, full insert sequence) (cDNA clone:J033129B02, full insert sequence) Q6ZGM4 Q6ZGM4_ORYSJ Os02g0116600 Os02g0116600 OJ1442_E05.19 OsJ_05121 OSNPB_020116600 ENOG411DWG0 RRP4 Q9ZVT7 RRP4_ARATH Exosome complex component RRP4 homolog (Ribosomal RNA-processing protein 4) (AtRRP4) (AtRrp4p) DISRUPTION PHENOTYPE: Embryonic lethality due to embryo developmental arrest at early globular stage. {ECO:0000269|PubMed:18160042}. Embryo defective; Preglobular-D. Belostotsky-2008 FUNCTION: Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. In vitro, is an active and distributive 3'->5' exonuclease requiring a free 3'-OH on the substrate and releasing nucleoside 5'-monophosphates (PubMed:11809881). Required for normal embryo development (PubMed:18160042). {ECO:0000269|PubMed:11809881, ECO:0000269|PubMed:18160042}. R-ATH-429958;R-ATH-450604;R-ATH-6791226; 36574 Exosome complex component RRP4 homolog (Ribosomal RNA-processing protein 4) (AtRRP4) (AtRrp4p) cytoplasm [GO:0005737]; cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; RNA binding [GO:0003723]; CUT catabolic process [GO:0071034]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; maturation of 5.8S rRNA [GO:0000460]; negative regulation of posttranscriptional gene silencing [GO:0060149]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription [GO:0071049]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; U4 snRNA 3'-end processing [GO:0034475] TISSUE SPECIFICITY: Expressed in roots, stems, rosette and cauline leaves, flowers and siliques. {ECO:0000269|PubMed:11809881}. locus:2014535; AT1G03360 Exosome complex component OSJNBa0019D11.5 protein (Os04g0520000 protein) (cDNA clone:J033116C14, full insert sequence) Q7XUA1 Q7XUA1_ORYSJ Os04g0520000 OSJNBa0019D11.5 OSNPB_040520000 ENOG411DWG1 SQE1 Q9SM02 ERG14_ARATH Squalene epoxidase 1 (AtSQE1) (EC 1.14.14.17) (Protein DROUGHT HYPERSENSITIVE 2) (Squalene monooxygenase) (XF1 protein) DISRUPTION PHENOTYPE: Non viable, sterile dwarf plants with short, highly branched roots. {ECO:0000269|PubMed:17426032}. Plants are hypersensitive to drought. Mutants have decreased stomatal conductance when grown in low relative humidity. Root architecture is affected: roots are 60% shorter than wild type and produce more lateral roots. Lateral roots are shortr and branched.Plants are shorter and leaves are yellow green. Chemically the mutants have decreased sterols in the roots decreased chlorophyll levels and increased levels of proline.,Dark grown seedlings have shorter hypocotyls characteristic of de-etiolated seedlings. Roots are highly branched. Plants have short stature and are sterile. Seeds abort.,Small plants seedling lethal. Dwarf; Pale green leaves; Very sensitive to drought-M. Botella-2009 FUNCTION: Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway. Can produce not only oxidosqualene, but also 2,3:22,23-dioxidosqualene. Main squalene epoxidase in the root. Sqe1 mutants may show defects in membrane lipid rafts, impairing the correct localization of RHD2 NADPH oxidase and the proper polarized production of ROS. {ECO:0000269|PubMed:17426032, ECO:0000269|PubMed:19309460, ECO:0000269|PubMed:19847116}. MISCELLANEOUS: SEQ4 or SEQ5 are unable to complement seq1 mutants. {ECO:0000305|PubMed:17426032}. PATHWAY: Terpene metabolism; lanosterol biosynthesis; lanosterol from farnesyl diphosphate: step 2/3. ARA:AT1G58440-MONOMER;MetaCyc:AT1G58440-MONOMER; R-ATH-191273; 1.14.13.132; 1.14.14.17 58175 Squalene epoxidase 1 (AtSQE1) (EC 1.14.14.17) (Protein DROUGHT HYPERSENSITIVE 2) (Squalene monooxygenase) (XF1 protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; squalene monooxygenase activity [GO:0004506]; response to water deprivation [GO:0009414]; sterol biosynthetic process [GO:0016126] TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, inflorescences, sepals, style and siliques. Expressed in expanded cotyledons, root tips and cortical cells of the root elongation zone, but not in root hair cells. In leaves, expressed in most cells, with a very strong expression in stomata. {ECO:0000269|PubMed:17426032, ECO:0000269|PubMed:19309460}. locus:2037660; AT1G58440 Squalene Os03g0231700 protein (Squalene monooxygenase, putative, expressed) (cDNA clone:J033045D18, full insert sequence),Os03g0231700 protein (Putative Squalene monooxygenase) (Squalene monooxygenase, putative, expressed),Os03g0231800 protein,Os03g0231800 protein (Fragment) Q10PK5,Q8GTX8,Q0DTR1,A0A0P0VV62 Q10PK5_ORYSJ,Q8GTX8_ORYSJ,Q0DTR1_ORYSJ,A0A0P0VV62_ORYSJ Os03g0231700 LOC_Os03g12900 Os03g0231700 OSNPB_030231700,Os03g0231700 LOC_Os03g12900 OJ1017C11.7 OsJ_10025 OSNPB_030231700,Os03g0231800 OSNPB_030231800 ENOG411DWG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60S ribosomal protein L18a NA NA NA NA NA NA NA ENOG411DWG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Major facilitator superfamily protein, expressed (Os03g0638200 protein) (Putative sugar transporter (Alternative splicing product)),Os03g0638200 protein (Fragment) Q75J45,A0A0P0W158 Q75J45_ORYSJ,A0A0P0W158_ORYSJ Os03g0638200 LOC_Os03g43720 Os03g0638200 OsJ_11843 OSJNBa0066H15.6 OSNPB_030638200,Os03g0638200 OSNPB_030638200 ENOG411EIDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQ67 Q84MD4,A0A1P8B1F9,A0A1P8B1F7 Q84MD4_ARATH,A0A1P8B1F9_ARATH,A0A1P8B1F7_ARATH At2g23890 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase) (Uncharacterized protein At2g23890),HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase ARA:GQT-1062-MONOMER; 64311,54259,67051 At2g23890 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase) (Uncharacterized protein At2g23890),HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase 5'-nucleotidase activity [GO:0008253]; metal ion binding [GO:0046872],hydrolase activity [GO:0016787]; metal ion binding [GO:0046872] locus:2061390; AT2G23890 5-nucleotidase domain-containing protein Nucleotidase-like protein (Os09g0424600 protein) (cDNA clone:J033073D14, full insert sequence) Q69QI6 Q69QI6_ORYSJ Os09g0424600 Os09g0424600 OSNPB_090424600 P0418B08.32 ENOG411EIDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0643750 protein (Fragment) A0A0P0WZJ9 A0A0P0WZJ9_ORYSJ Os06g0643750 OSNPB_060643750 ENOG411ED35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0137500 protein (Fragment) A0A0P0UY22 A0A0P0UY22_ORYSJ Os01g0137500 OSNPB_010137500 ENOG411ED33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein NA NA NA NA NA NA NA ENOG411ED39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411ED3K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA metalloendoproteinase 1-like NA NA NA NA NA NA NA ENOG411ED3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA O-methyltransferase NA NA NA NA NA NA NA ENOG411ED3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED3X RABA1I,RABA1H Q9S810,Q1PEX3 RAA1I_ARATH,RAA1H_ARATH Ras-related protein RABA1i (AtRABA1i),Ras-related protein RABA1h (AtRABA1h) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}. R-ATH-5620916;R-ATH-8873719; 24271,24337 Ras-related protein RABA1i (AtRABA1i),Ras-related protein RABA1h (AtRABA1h) plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031],plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031] locus:2018698;,locus:2057624; AT1G28550,AT2G33870 RAB NA NA NA NA NA NA NA ENOG411ED3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldehyde dehydrogenase family NA NA NA NA NA NA NA ENOG411E5KQ PCR1,PCR3,PCR2 Q9LQU2,P0CW97,Q9LQU4,A0A1P8ANK9 PCR1_ARATH,PCR3_ARATH,PCR2_ARATH,A0A1P8ANK9_ARATH Protein PLANT CADMIUM RESISTANCE 1 (AtPCR1),Protein PLANT CADMIUM RESISTANCE 3 (AtPCR3),Protein PLANT CADMIUM RESISTANCE 2 (AtPCR2),PLANT CADMIUM RESISTANCE 2 DISRUPTION PHENOTYPE: No heavy metal-related phenotype. {ECO:0000269|PubMed:20647347}.,DISRUPTION PHENOTYPE: Strongly impaired growth in the presence of heavy metals such as zinc, cadmium, copper or iron. {ECO:0000269|PubMed:20647347}. Sensitive to limited and elevated zinc-E. Martinoia-2010 FUNCTION: Involved in glutathione-independent cadmium resistance. Reduces cadmium uptake rather than activating efflux, but is not closely coupled to calcium transporter. {ECO:0000269|PubMed:15181212, ECO:0000269|PubMed:20647347}.,FUNCTION: May be involved in heavy metals transport. {ECO:0000250}.,FUNCTION: Zinc transporter acting in both zinc extrusion and long-distance zinc transport. Involved in the loading of zinc into the xyleme and in the detoxification of excess zinc at the epidermal cells. Acts independently from the zinc transporters HMA2 and HMA4. May be also involved in cadmium resistance. {ECO:0000269|PubMed:15181212, ECO:0000269|PubMed:20647347}. 16503,16473,16742,16087 Protein PLANT CADMIUM RESISTANCE 1 (AtPCR1),Protein PLANT CADMIUM RESISTANCE 3 (AtPCR3),Protein PLANT CADMIUM RESISTANCE 2 (AtPCR2),PLANT CADMIUM RESISTANCE 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773],integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in aerial part, but not in roots. Detected in the guard and mesophyll cells. {ECO:0000269|PubMed:15181212, ECO:0000269|PubMed:20647347}.,TISSUE SPECIFICITY: Expressed in roots, leaves, shoots, stems, flowers and siliques. In leaves, restricted mainly to the vascular tissue. Expressed in all cells in the root tip, in the vascular tissue and the epidermis in the elongation zone, and only in the epidermal cells in the root hair zone. {ECO:0000269|PubMed:15181212, ECO:0000269|PubMed:20647347}. locus:2006767;,locus:504954894;,locus:2006772; AT1G14880,AT5G35525,AT1G14870 Protein PLANT CADMIUM RESISTANCE Os02g0579800 protein (Putative ORFX),Os02g0580000 protein (Fragment) Q6EP48,A0A0P0VL00 Q6EP48_ORYSJ,A0A0P0VL00_ORYSJ Os02g0579800 Os02g0579800 B1267B06.22 OsJ_07264 OSNPB_020579800,Os02g0580000 OSNPB_020580000 ENOG411E8Z9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0642200 protein (cDNA clone:001-104-H01, full insert sequence) (cDNA clone:J023099A13, full insert sequence) Q5VNW4 Q5VNW4_ORYSJ Os01g0642200 OsJ_02789 OSNPB_010642200 P0039G05.26 P0510C12.11 ENOG411E8Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8Z0 Q1G3B8,Q9SIC3,Q9XIP5,Q9SIC7,Q3EBP7 Y2272_ARATH,Y2146_ARATH,Y2741_ARATH,Y2142_ARATH,Q3EBP7_ARATH B3 domain-containing protein At2g32645,Putative B3 domain-containing protein At2g31460,Putative B3 domain-containing protein At2g27410,B3 domain-containing protein At2g31420,B3 domain protein, putative (DUF313) 22022,27591,29017,24040,24911 B3 domain-containing protein At2g32645,Putative B3 domain-containing protein At2g31460,Putative B3 domain-containing protein At2g27410,B3 domain-containing protein At2g31420,B3 domain protein, putative (DUF313) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:4515102941;,locus:2061335;,locus:2038673;,locus:2061285;,locus:504955950; AT2G32645,AT2G31460,AT2G27410,AT2G31420,AT2G32905 transcription DNA-dependent NA NA NA NA NA NA NA ENOG411E8Z2 DAZ3 O81801 O81801_ARATH At4g35700 (Uncharacterized protein AT4g35700) (Uncharacterized protein F8D20.210) (Zinc finger (C2H2 type) family protein) (Zinc finger family protein) 28688 At4g35700 (Uncharacterized protein AT4g35700) (Uncharacterized protein F8D20.210) (Zinc finger (C2H2 type) family protein) (Zinc finger family protein) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen sperm cell differentiation [GO:0048235]; regulation of transcription, DNA-templated [GO:0006355] locus:2127943; AT4G35700 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E8Z5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helicase associated domain NA NA NA NA NA NA NA ENOG411E8Z4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0364900 protein Q0IY57 Q0IY57_ORYSJ Os10g0364900 OSNPB_100364900 ENOG411E8Z6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E555 PSRP3 Q9SX22,Q9LFV0,A8MQL0 RRP31_ARATH,RRP32_ARATH,A8MQL0_ARATH 30S ribosomal protein 3-1, chloroplastic (Plastid-specific 30S ribosomal protein 3-1) (PSRP-3 1),30S ribosomal protein 3-2, chloroplastic (Plastid-specific 30S ribosomal protein 3-2) (PSRP-3 2),Ribosomal protein PSRP-3/Ycf65 FUNCTION: Probably a ribosomal protein or a ribosome-associated protein. {ECO:0000250}. 18472,20468,18146 30S ribosomal protein 3-1, chloroplastic (Plastid-specific 30S ribosomal protein 3-1) (PSRP-3 1),30S ribosomal protein 3-2, chloroplastic (Plastid-specific 30S ribosomal protein 3-2) (PSRP-3 2),Ribosomal protein PSRP-3/Ycf65 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; ribosome [GO:0005840]; thylakoid [GO:0009579]; structural constituent of ribosome [GO:0003735]; plastid translation [GO:0032544],chloroplast [GO:0009507]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2026940;,locus:2143211; AT1G68590,AT5G15760 ribosomal protein 3 OSJNBa0072F16.12 protein (Os04g0461100 protein) (cDNA clone:J013130N24, full insert sequence),Os04g0461100 protein (Fragment) Q7XUV4,A0A0P0WBG4 Q7XUV4_ORYSJ,A0A0P0WBG4_ORYSJ Os04g0461100 Os04g0461100 OsJ_15062 OSJNBa0072F16.12 OSNPB_040461100,Os04g0461100 OSNPB_040461100 ENOG411E554 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: May negatively regulate the SNF1 kinase (By similarity) Os06g0652550 protein A0A0P0WZE4 A0A0P0WZE4_ORYSJ Os06g0652550 OSNPB_060652550 ENOG411E557 GRXC3 Q9FVX1,A0A1P8AQK4 GRXC3_ARATH,A0A1P8AQK4_ARATH Glutaredoxin-C3 (AtGrxC3),Glutaredoxin family protein FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. R-ATH-499943; 14247,17385 Glutaredoxin-C3 (AtGrxC3),Glutaredoxin family protein Golgi apparatus [GO:0005794]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454],cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2031452; AT1G77370 protein disulfide oxidoreductase activity Monothiol glutaredoxin-S6 Q6H628 GRXS6_ORYSJ GRXS6 Os02g0646400 LOC_Os02g43180 OsJ_07715 P0030D07.29 P0519A12.14 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411E556 Q8S8K0 Q8S8K0_ARATH Expressed protein (Transmembrane protein) (Uncharacterized protein At2g17972) (Uncharacterized protein At2g17972/T27K22.22) 18009 Expressed protein (Transmembrane protein) (Uncharacterized protein At2g17972) (Uncharacterized protein At2g17972/T27K22.22) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:505006252; AT2G17972 NA Os06g0715200 protein (cDNA clone:J013063D09, full insert sequence) Q5Z9P9 Q5Z9P9_ORYSJ Os06g0715200 Os06g0715200 OsJ_22658 OSNPB_060715200 P0481E08.12 ENOG411E551 SAUR76 Q29PU2 Q29PU2_ARATH At5g20820 (SAUR-like auxin-responsive protein family) FUNCTION: May be involved in the regulation of ethylene receptor signaling. Promotes cell expansion and plant growth (PubMed:26207341). Involved in the regulation of cell elongation (PubMed:24312429). {ECO:0000269|PubMed:24312429, ECO:0000269|PubMed:26207341}. MISCELLANEOUS: Plants over-expressing SAUR76 display increased root growth and reduced number of cells in leaves leading to reduced leaf area (PubMed:24312429). Plants silencing SAUR76 exhibit increased sensitivity to ethylene, while plants over-expressing SAUR76 display reduced ethylene sensitivity. Plants over-expressing SAUR76 exhibit increased rosette diameters (PubMed:26207341). {ECO:0000269|PubMed:24312429, ECO:0000269|PubMed:26207341}. 13981 At5g20820 (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2180479; AT5G20820 - Auxin-responsive SAUR gene family member expressed Auxin-induced protein-related-like protein (Os08g0452500 protein) (cDNA clone:002-114-F10, full insert sequence) (cDNA clone:J033093K08, full insert sequence) Q6ZKQ7 Q6ZKQ7_ORYSJ Os08g0452500 OJ1117_F10.20 OSNPB_080452500 ENOG411E550 F4JNI2,F4JNI1 F4JNI2_ARATH,F4JNI1_ARATH Uncharacterized protein 15819,30668 Uncharacterized protein locus:2121656; AT4G23330 Uncharacterized conserved protein (DUF2365) Os07g0483400 protein Q7EYI3 Q7EYI3_ORYSJ OJ1136_F08.108 P0045A07.132 Os07g0483400 OSNPB_070483400 ENOG411E553 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E552 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By similarity) NA NA NA NA NA NA NA ENOG411E559 MUB6 Q8GWJ6 MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 (AtMUB6) (Membrane-anchored ub-fold protein 6) FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. MISCELLANEOUS: Heat stable and remains soluble at temperatures exceeding 90 degrees Celsius. 13510 Membrane-anchored ubiquitin-fold protein 6 (AtMUB6) (Membrane-anchored ub-fold protein 6) plasma membrane [GO:0005886] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16831869}. locus:2030616; AT1G22050 membrane-anchored ubiquitin-fold protein Membrane-anchored ubiquitin-fold protein 2 (Membrane-anchored ub-fold protein 2) (OsMUB2),Os12g0141900 protein (Fragment) Q67UI2,Q0IQ65 MUB2_ORYSJ,Q0IQ65_ORYSJ MUB2 Os06g0224100 LOC_Os06g12020 P0638H11.28,Os12g0141900 Os12g0141900 OSNPB_120141900 FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. {ECO:0000250|UniProtKB:Q9SH14}. ENOG411E558 MP3 Q9SK39 SBP3_ARATH Probable steroid-binding protein 3 (AtMP3) (Membrane-associated progesterone-binding protein 2) (AtMAPR2) R-ATH-6798695; 11031 Probable steroid-binding protein 3 (AtMP3) (Membrane-associated progesterone-binding protein 2) (AtMAPR2) cytosol [GO:0005829]; endomembrane system [GO:0012505]; membrane [GO:0016020]; nucleus [GO:0005634]; heme binding [GO:0020037]; steroid binding [GO:0005496] locus:2047401; AT2G24940 steroid-binding protein Cytochrome b5 domain-containing protein-like (Os02g0793700 protein) (cDNA clone:001-104-H03, full insert sequence),Os02g0793700 protein (Fragment) Q6K680,A0A0P0VQT9 Q6K680_ORYSJ,A0A0P0VQT9_ORYSJ Os02g0793700 OJ1249_F12.34 OSNPB_020793700 P0700F06.22,Os02g0793700 OSNPB_020793700 ENOG411E8ZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E55V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os01g0830900 protein (Zinc finger (C3HC4-type RING finger) family protein-like) Q8S236 Q8S236_ORYSJ Os01g0830900 OsJ_03958 OSNPB_010830900 P0446G04.25 ENOG411E55Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0377000 protein) (cDNA clone:002-181-G05, full insert sequence) Q338Z9 Q338Z9_ORYSJ LOC_Os10g23060 Os10g0377000 OSNPB_100377000 ENOG411E55P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRC NA NA NA NA NA NA NA ENOG411E55Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os08g0137400 protein (cDNA clone:J013068C11, full insert sequence) (cDNA clone:J013134F16, full insert sequence) Q0J845 Q0J845_ORYSJ Os08g0137400 Os08g0137400 OSNPB_080137400 ENOG411E55X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0684000 protein Q6EU02 Q6EU02_ORYSJ Os02g0684000 Os02g0684000 OJ1123_G04.31 OJ1212_A08.8 OSNPB_020684000 ENOG411E55Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os09g0306400 protein (Putative bZIP transcription factor) (cDNA clone:J013000L18, full insert sequence) (cDNA clone:J013001A19, full insert sequence) (cDNA clone:J023058F04, full insert sequence) Q69KN5 Q69KN5_ORYSJ Os09g0306400 Os09g0306400 OSJNBa0064I23.18 OSNPB_090306400 ENOG411E55G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: coiledcoil domain containing NA NA NA NA NA NA NA ENOG411E55F CPN10 P34893,Q8LDC9,A0A1P8AUX7 CH10_ARATH,Q8LDC9_ARATH,A0A1P8AUX7_ARATH 10 kDa chaperonin, mitochondrial (Chaperonin 10) (CPN10) (Protein groES),GroES-like family protein (Putative 10kDa chaperonin (CPN10) protein) (Putative 10kd chaperonin),Chaperonin 10 FUNCTION: Seems to function only as a co-chaperone, along with CPN60, and in certain cases is essential for the discharge of biologically active proteins from CPN60. {ECO:0000305|PubMed:9011092}. 10812,10546,8857 10 kDa chaperonin, mitochondrial (Chaperonin 10) (CPN10) (Protein groES),GroES-like family protein (Putative 10kDa chaperonin (CPN10) protein) (Putative 10kd chaperonin),Chaperonin 10 mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; chaperone binding [GO:0051087]; copper ion binding [GO:0005507]; unfolded protein binding [GO:0051082]; chaperone mediated protein folding requiring cofactor [GO:0051085]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986],mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; chaperone binding [GO:0051087]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; chaperone mediated protein folding requiring cofactor [GO:0051085]; response to unfolded protein [GO:0006986],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein folding [GO:0006457] locus:2196189;,locus:2201210; AT1G14980,AT1G23100 10 kDa chaperonin-like 10 kDa chaperonin (Os07g0641700 protein) (cDNA clone:J033132M21, full insert sequence),10 kDa chaperonin, putative, expressed (Os03g0366000 protein) (cDNA, clone: J065210A12, full insert sequence),Os07g0641700 protein (Fragment) Q8H3I7,Q10KY5,A0A0P0X9T8 Q8H3I7_ORYSJ,Q10KY5_ORYSJ,A0A0P0X9T8_ORYSJ P0524G08.116 Os07g0641700 OsJ_25311 OSNPB_070641700,Os03g0366000 LOC_Os03g25050 OSNPB_030366000,Os07g0641700 OSNPB_070641700 ENOG411E55B Q8LFL5 Q8LFL5_ARATH At1g49975 (Photosystem I reaction center subunit N) 14730 At1g49975 (Photosystem I reaction center subunit N) photosystem I [GO:0009522]; photosynthesis [GO:0015979] locus:505006176; AT1G49975 Photosystem I reaction centre subunit N (PSAN or PSI-N) Os03g0731100 protein (Fragment) Q0DNW0 Q0DNW0_ORYSJ Os03g0731100 OSNPB_030731100 ENOG411E55M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0485800 protein (cDNA clone:002-150-F03, full insert sequence) Q0J0R9 Q0J0R9_ORYSJ Os09g0485800 Os09g0485800 OSNPB_090485800 ENOG411E55N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) NA NA NA NA NA NA NA ENOG411E55H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os08g0137800 protein (cDNA clone:001-110-D06, full insert sequence),Os08g0138200 protein (Putative blue copper binding protein),Os08g0137900 protein (Putative blue copper binding protein),Os08g0138100 protein (Putative blue copper binding protein) Q0J844,Q6ZJV9,Q6ZJW2,Q6ZJW0 Q0J844_ORYSJ,Q6ZJV9_ORYSJ,Q6ZJW2_ORYSJ,Q6ZJW0_ORYSJ Os08g0137800 Os08g0137800 OSNPB_080137800,Os08g0138200 OJ1119_D01.5 OJ1613_G04.33 OSNPB_080138200,Os08g0137900 Os08g0137900 OJ1119_D01.2 OJ1613_G04.30 OsJ_25977 OSNPB_080137900,Os08g0138100 OJ1119_D01.4 OJ1613_G04.32 OSNPB_080138100 ENOG411E55K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oral cancer overexpressed protein 1 Os07g0530300 protein (cDNA clone:002-188-H10, full insert sequence) Q8GVP9 Q8GVP9_ORYSJ P0681F05.114 Os07g0530300 OsJ_24534 OSNPB_070530300 ENOG411E55J TCP5 Q9FME3 TCP5_ARATH Transcription factor TCP5 Homozygotes have a WT phenotype FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. 40163 Transcription factor TCP5 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; positive regulation of development, heterochronic [GO:0045962]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. locus:2173557; AT5G60970 Transcription factor NA NA NA NA NA NA NA ENOG411EM59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHROMO NA NA NA NA NA NA NA ENOG411EM55 RR24 F4JZT3 F4JZT3_ARATH Response regulator 24 There are no consistently detectable phenotypic differences between this double mutant and wild-type plants grown under normal conditions.,There are no detectable phenotypic differences between this mutant and wild-type plants grown under normal conditions. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9M8Y4}. 15575 Response regulator 24 intracellular [GO:0005622]; phosphorelay signal transduction system [GO:0000160] locus:1005716875; AT5G26594 REC NA NA NA NA NA NA NA ENOG411EM50 AHK1 Q9SXL4 AHK1_ARATH Histidine kinase 1 (EC 2.7.13.3) (Arabidopsis histidine kinase 1) (AtHK1) (Protein AUTHENTIC HIS-KINASE 1) DISRUPTION PHENOTYPE: Insensitivity to ABA, but hypersensitivity to drought and high salinity stresses. Loss of seed viability over time dur to altered dessiccation. {ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18441212}. FUNCTION: Functions as an osmosensor histidine kinase that detects water stress and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Positive regulator of drought and salt stress responses, and abscisic acid (ABA) signaling. Confers drought tolerance, probably by regulating levels of ABA accumulation. Plays a redundant role in regulating plant growth and development. Required for the regulation of desiccation processes during seed formation. {ECO:0000269|PubMed:10488240, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18441212}. 2.7.13.3 135449 Histidine kinase 1 (EC 2.7.13.3) (Arabidopsis histidine kinase 1) (AtHK1) (Protein AUTHENTIC HIS-KINASE 1) integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; histidine phosphotransfer kinase activity [GO:0009927]; osmosensor activity [GO:0005034]; phosphorelay sensor kinase activity [GO:0000155]; abscisic acid-activated signaling pathway [GO:0009738]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414]; seed maturation [GO:0010431]; stomatal complex patterning [GO:0010375] TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in stems, leaves and flowers. {ECO:0000269|PubMed:10488240}. locus:2827836; AT2G17820 Histidine kinase NA NA NA NA NA NA NA ENOG411EM53 AHK5,MAJ23.40 Q3S4A7,Q9FT64 AHK5_ARATH,Q9FT64_ARATH Histidine kinase 5 (EC 2.7.13.3) (Arabidopsis histidine kinase 5) (AtHK5) (Protein AUTHENTIC HIS-KINASE 5) (Protein CYTOKININ-INDEPENDENT 2),Calmodulin-binding protein-like protein (Calmodulin-binding protein-related) (Uncharacterized protein AT5g10680) DISRUPTION PHENOTYPE: Hypersensitive to abscisic acid (ABA) and ethylene (ACC) in roots. Reduced stomatal closure in response to H(2)O(2), bacterial pathogen associated molecular pattern (PAMP) flagellin, Pseudomonas syringae, darkness, nitric oxide and ethylene, but normal closure in response to ABA and the peptide elf. Increased sensitivity to pathogens and increased tolerance to high salinity. {ECO:0000269|PubMed:17202180, ECO:0000269|PubMed:18560512, ECO:0000269|PubMed:22256998}. FUNCTION: Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Negative regulator of the ETR1-dependent abscisic acid (ABA) and ethylene signaling pathway that inhibits the root elongation. Promotes stomatal closure. Regulates stomatal opening by integrating multiple signals via hydrogen peroxide H(2)O(2) homeostasis in guard cells in an ABA-independent manner. May contribute to basal defense mechanisms by closing stomata in the presence of bacterial pathogens. Regulates both hormone levels and ROS production in response to stress. Required for full immunity to bacterial pathogen and necrotrophic fungus. {ECO:0000269|PubMed:17202180, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18560512, ECO:0000269|PubMed:22256998, ECO:0000269|PubMed:22827948}. 2.7.13.3 103637,27969 Histidine kinase 5 (EC 2.7.13.3) (Arabidopsis histidine kinase 5) (AtHK5) (Protein AUTHENTIC HIS-KINASE 5) (Protein CYTOKININ-INDEPENDENT 2),Calmodulin-binding protein-like protein (Calmodulin-binding protein-related) (Uncharacterized protein AT5g10680) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; metal ion binding [GO:0046872]; phosphorelay sensor kinase activity [GO:0000155]; protein histidine kinase activity [GO:0004673]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to hydrogen peroxide [GO:0070301]; cellular response to molecule of bacterial origin [GO:0071219]; cellular response to nitric oxide [GO:0071732]; cytokinin-activated signaling pathway [GO:0009736]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; regulation of stomatal closure [GO:0090333]; root development [GO:0048364] TISSUE SPECIFICITY: Present in light-grown but not in etiolated seedlings. Mostly expressed in roots flowers and siliques, and, to a lower extent, in stems and leaves, especially in guard cells. {ECO:0000269|PubMed:17202180, ECO:0000269|PubMed:18560512}. locus:2159669;,locus:2159649; AT5G10720,AT5G10680 ahk5 cki2 ahk5 (arabidopsis histidine kinase 5) NA NA NA NA NA NA NA ENOG411EM52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAS fold NA NA NA NA NA NA NA ENOG411EM5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-terminal binding protein AN-like Angustifolia, putative, expressed (Os10g0533000 protein) (Putative glyoxylate reductase) (cDNA clone:J013075J23, full insert sequence) (cDNA clone:J023022B11, full insert sequence),Os03g0126100 protein (Fragment) Q8LN38,Q0DVK1 Q8LN38_ORYSJ,Q0DVK1_ORYSJ Os10g0533000 LOC_Os10g38900 Os10g0533000 OSJNBa0053C23.2 OSNPB_100533000,Os03g0126100 OSNPB_030126100 ENOG411EM5H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ central domain Os02g0804500 protein (Putative heat shock protein dnaJ) Q6K850 Q6K850_ORYSJ Os02g0804500 Os02g0804500 OJ1548_F12.8 OSNPB_020804500 ENOG411EM5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Class II histone deacetylase complex subunits 2 and 3 Os01g0881000 protein A0A0P0VBB9 A0A0P0VBB9_ORYSJ Os01g0881000 OSNPB_010881000 ENOG411EM5G OCT4 Q9LHQ6 OCT4_ARATH Organic cation/carnitine transporter 4 (AtOCT4) FUNCTION: High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations (By similarity). {ECO:0000250}. R-ATH-112311;R-ATH-181430;R-ATH-197264;R-ATH-200425;R-ATH-2161517;R-ATH-442660;R-ATH-549127;R-ATH-561048; 57502 Organic cation/carnitine transporter 4 (AtOCT4) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; organic anion transmembrane transporter activity [GO:0008514]; cellular response to water deprivation [GO:0042631] TISSUE SPECIFICITY: Mostly expressed in siliques, and, to a lower extent, in stems, leaves, flowers and siliques. Present in pollen. In the stems of secondary inflorescences present in the phloem cells and xylem parenchyma cells. {ECO:0000269|PubMed:16607029, ECO:0000269|PubMed:18710496}. locus:2083425; AT3G20660 organic cation NA NA NA NA NA NA NA ENOG411EM5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EM5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM5C CHR7,PKL,PKR2 F4JTF6,Q9S775,A0A1P8AZP6,A0A1P8B487,A0A1P8AZP2,F4JTF7 CHR7_ARATH,PKL_ARATH,A0A1P8AZP6_ARATH,A0A1P8B487_ARATH,A0A1P8AZP2_ARATH,F4JTF7_ARATH CHD3-type chromatin-remodeling factor CHR7 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 7) (Protein PICKLE RELATED 2),CHD3-type chromatin-remodeling factor PICKLE (EC 3.6.4.-) (Protein CHROMATIN REMODELING 6) (AtCHR6) (Protein GYMNOS),Chromatin remodeling factor CHD3 (PICKLE),Chromatin remodeling factor DISRUPTION PHENOTYPE: Hypersensitivity to cytokinins. {ECO:0000269|PubMed:21357580}. Incomplete penetrance of thick, green distal end of primary root-J. Ogas-1999 FUNCTION: Chromatin remodeling factor that represses the expression of embryonic trait genes upon and after seed germination and thus enables the developmental switch to post-germinative growth. {ECO:0000250|UniProtKB:Q9S775}.,FUNCTION: Chromatin remodeling factor that represses the expression of embryonic trait genes (such as NFYB9/LEC1) upon and after seed germination and thus enables the developmental switch to post-germinative growth. Silences some MADS-box proteins such as PHE1 and PHE2. Plays a role during carpel differentiation. Regulates late processes in cytokinin signaling. {ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:10570159, ECO:0000269|PubMed:16359393, ECO:0000269|PubMed:21357580}. MISCELLANEOUS: 'Gymnos' means 'naked' in Greek. 3.6.4.- 139417,158405,161527,138568,160467,134636 CHD3-type chromatin-remodeling factor CHR7 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 7) (Protein PICKLE RELATED 2),CHD3-type chromatin-remodeling factor PICKLE (EC 3.6.4.-) (Protein CHROMATIN REMODELING 6) (AtCHR6) (Protein GYMNOS),Chromatin remodeling factor CHD3 (PICKLE),Chromatin remodeling factor nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; covalent chromatin modification [GO:0016569],nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; cell proliferation [GO:0008283]; chromatin remodeling [GO:0006338]; covalent chromatin modification [GO:0016569]; cytokinin-activated signaling pathway [GO:0009736]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of lateral root development [GO:2000023]; response to auxin [GO:0009733]; response to gibberellin [GO:0009739]; root development [GO:0048364],nucleus [GO:0005634]; ATP binding [GO:0005524]; metal ion binding [GO:0046872],nucleus [GO:0005634]; ATP binding [GO:0005524] TISSUE SPECIFICITY: Mostly expressed in tissue undergoing significant differentiation (meristems and primordia) such as young seedlings, influorescent tissue and young siliques, but not in endosperm and seed coat (at protein level). Levels decrease as organs age. Also present in trichomes. {ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:10570159, ECO:0000269|PubMed:16359393}. locus:2116747;,locus:2040184; AT4G31900,AT2G25170 CHD3-type chromatin-remodeling factor Os06g0183800 protein (Fragment) A0A0N7KLN2 A0A0N7KLN2_ORYSJ Os06g0183800 OSNPB_060183800 ENOG411EM5B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os07g0497000 protein (Fragment) A0A0P0X6N4 A0A0P0X6N4_ORYSJ Os07g0497000 OSNPB_070497000 ENOG411EM5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein Os11g0426850 protein (Fragment) A0A0P0Y274 A0A0P0Y274_ORYSJ Os11g0426850 OSNPB_110426850 ENOG411EM5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ty3-gypsy subclass NA NA NA NA NA NA NA ENOG411EM5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EM5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EM5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integrase core domain NA NA NA NA NA NA NA ENOG411EM5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Retro-transposon NA NA NA NA NA NA NA ENOG411EM5Q Q682G3 Q682G3_ARATH At1g48720 (Copia-like polyprotein/retrotransposon) (Copia-type reverse transcriptase-like protein) (Uncharacterized protein At1g48720) 10919 At1g48720 (Copia-like polyprotein/retrotransposon) (Copia-type reverse transcriptase-like protein) (Uncharacterized protein At1g48720) RNA-directed DNA polymerase activity [GO:0003964] locus:2008174; AT1G48720 NA NA NA NA NA NA NA NA ENOG411EM5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EM5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EM5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411E8ZC Q9FN38 Q9FN38_ARATH Uncharacterized protein At5g53880 7782 Uncharacterized protein At5g53880 mitochondrion [GO:0005739]; plasma membrane [GO:0005886] locus:2154704; AT5G53880 NA NA NA NA NA NA NA NA ENOG411E8ZE O81841 O81841_ARATH At4g27380/M4I22_190 (Uncharacterized protein AT4g27380) 17197 At4g27380/M4I22_190 (Uncharacterized protein AT4g27380) locus:2131774; AT4G27380 NA NA NA NA NA NA NA NA ENOG411DRA9 HDA14 Q941D6 HDA14_ARATH Histone deacetylase 14 (EC 3.5.1.98) Increased root hair density. Increased root hair density-S. Bai-2005 FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250, ECO:0000269|PubMed:16176989}. MISCELLANEOUS: HDA14 is not required for the cellular patterning in the root epidermis. 3.5.1.98 45577 Histone deacetylase 14 (EC 3.5.1.98) chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; alpha-tubulin binding [GO:0043014]; beta-tubulin binding [GO:0048487]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; protein phosphatase 2A binding [GO:0051721]; protein self-association [GO:0043621]; tubulin deacetylase activity [GO:0042903]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; tubulin deacetylation [GO:0090042] locus:2119201; AT4G33470 Histone deacetylase Histone deacetylase (EC 3.5.1.98) Q2QWU2 Q2QWU2_ORYSJ Os12g0182700 LOC_Os12g08220 Os12g0182700 OsJ_35446 OSNPB_120182700 ENOG411DRA8 PTAC3 F4J3M2 F4J3M2_ARATH Plastid transcriptionally active 3 Pale green seeds and seedlings-D. Meinke-2008 102920 Plastid transcriptionally active 3 chloroplast [GO:0009507]; membrane [GO:0016020]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508] locus:2102985; AT3G04260 NA NA NA NA NA NA NA NA ENOG411DRA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0155100 protein) (cDNA clone:002-150-H05, full insert sequence) Q7G6D9 Q7G6D9_ORYSJ Os10g0155100 LOC_Os10g06680 Os10g0155100 OSJNAa0034B05.10 OSJNBa0004E08.6 OSNPB_100155100 ENOG411DRA0 MJK13.9 Q9LDU3 Q9LDU3_ARATH MJK13.9 protein (Regulator of chromosome condensation (RCC1) family protein) (Uncharacterized protein At3g15430) 53029 MJK13.9 protein (Regulator of chromosome condensation (RCC1) family protein) (Uncharacterized protein At3g15430) locus:2090136; AT3G15430 E3 ubiquitin-protein ligase Os07g0459400 protein (Putative UVB-resistance protein UVR8) (cDNA clone:J033064G16, full insert sequence),Os07g0459500 protein Q84YP7,A0A0N7KNE1 Q84YP7_ORYSJ,A0A0N7KNE1_ORYSJ Os07g0459400 Os07g0459400 OSJNBa0040K22.115 OSNPB_070459400,Os07g0459500 OSNPB_070459500 ENOG411DRA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative zinc finger in N-recognin (UBR box) NA NA NA NA NA NA NA ENOG411DRA5 ARP7 Q8L4Y5 ARP7_ARATH Actin-related protein 7 All the heterozygous mutant plants were morphologically similar to wildtype plants under normal growth conditions. Mutant siliques revealed abortion of a significant number of seeds (25%). Seeds were small white or brown and shriveled. Those abnormal seeds contained small rudimentary embryos that were arrested early during development at torpedo and bent-cotyledon stages. The 25% aborted homozygous embryos were rudimentary and arrested at or before the torpedo stage of development. Despite aberrant embryo development endosperm development and enlargement of seeds harboring small mutant embryos appeared normal until the late torpedo stage after which the endosperm and the integument layers started to disintegrate. Eventually the seeds turned brownish and dried out prematurely. Embryo defective; Cotyledon-R. Meagher-2003 FUNCTION: Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression. {ECO:0000269|PubMed:16040647}. 39904 Actin-related protein 7 cytoplasm [GO:0005737]; nucleus [GO:0005634]; structural constituent of cytoskeleton [GO:0005200]; anatomical structure morphogenesis [GO:0009653]; chromatin organization [GO:0006325]; covalent chromatin modification [GO:0016569]; embryo development ending in seed dormancy [GO:0009793]; floral organ abscission [GO:0010227] TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in roots, seedlings, leaves and siliques (at protein level). {ECO:0000269|PubMed:11891255, ECO:0000269|PubMed:12609034, ECO:0000269|PubMed:16040647}. locus:2101866; AT3G60830 Actin-related protein Actin-related protein 7 A3ANB5 ARP7_ORYSJ ARP7 Os03g0783000 LOC_Os03g56970 OsJ_012287 OsJ_12834 OSJNBa0091J19.6 FUNCTION: Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression. {ECO:0000250}. ENOG411DRA4 Q8LDU0,Q56W16 Q8LDU0_ARATH,Q56W16_ARATH At4g28360 (Ribosomal protein L22p/L17e family protein) (Uncharacterized protein At4g28355),AT1G52370 protein (At1g52370) (Chloroplast 50S ribosomal protein L22) (Putative chloroplast 50S ribosomal protein L22) (Ribosomal protein L22p/L17e family protein) 30456,30157 At4g28360 (Ribosomal protein L22p/L17e family protein) (Uncharacterized protein At4g28355),AT1G52370 protein (At1g52370) (Chloroplast 50S ribosomal protein L22) (Putative chloroplast 50S ribosomal protein L22) (Ribosomal protein L22p/L17e family protein) large ribosomal subunit [GO:0015934]; mitochondrion [GO:0005739]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],large ribosomal subunit [GO:0015934]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2121318;,locus:2018214; AT4G28360,AT1G52370 ribosomal protein L22 50S ribosomal protein L22-like (Os01g0616500 protein) (cDNA clone:J033012O14, full insert sequence) Q5ZDK4 Q5ZDK4_ORYSJ Os01g0616500 Os01g0616500 OsJ_02612 OSNPB_010616500 P0686E09.15 ENOG411DRA7 PCMP-E48 Q9SKQ4 PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090 67518 Pentatricopeptide repeat-containing protein At2g21090 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2047017; AT2G21090 repeat-containing protein NA NA NA NA NA NA NA ENOG411DRA6 ND4 P93313 NU4M_ARATH NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH dehydrogenase subunit 4) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07717) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. ARA:ATMG00580-MONOMER; 1.6.5.3 55830 NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH dehydrogenase subunit 4) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773] ATMG00580 NADH-ubiquinone oxidoreductase chain 4 NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) Q8HCP7 Q8HCP7_ORYSJ nad4 ENOG411DRAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase OSJNBb0002J11.8 protein (Os04g0506700 protein),Os04g0420033 protein,Os04g0420300 protein,Os04g0155500 protein,Os04g0161850 protein (Fragment) Q7XUM4,A0A0P0WAJ2,A0A0P0WAE2,A0A0P0W6Q5,A0A0P0W6K3 Q7XUM4_ORYSJ,A0A0P0WAJ2_ORYSJ,A0A0P0WAE2_ORYSJ,A0A0P0W6Q5_ORYSJ,A0A0P0W6K3_ORYSJ OSJNBb0002J11.8 Os04g0506700 OSNPB_040506700,Os04g0420033 OSNPB_040420033,Os04g0420300 OSNPB_040420300,Os04g0155500 OSNPB_040155500,Os04g0161850 OSNPB_040161850 ENOG411DRAK Q9LRY5 Q9LRY5_ARATH AT3g24740/K7P8_3 (Cellulose synthase, putative (DUF1644)) 40106 AT3g24740/K7P8_3 (Cellulose synthase, putative (DUF1644)) locus:2087303; AT3G24740 Protein of unknown function (DUF1644) NA NA NA NA NA NA NA ENOG411DRAM YLS7,TBL18 Q9FHM0,Q8VYS5 TBL17_ARATH,TBL18_ARATH Protein YLS7 (Protein TRICHOME BIREFRINGENCE-LIKE 17) (Protein YELLOW-LEAF-SPECIFIC GENE 7),Protein trichome birefringence-like 18 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 56526,59349 Protein YLS7 (Protein TRICHOME BIREFRINGENCE-LIKE 17) (Protein YELLOW-LEAF-SPECIFIC GENE 7),Protein trichome birefringence-like 18 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554]; leaf senescence [GO:0010150],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571}. TISSUE SPECIFICITY: Expressed in roots, cauline leaves and flowers. {ECO:0000269|PubMed:11230571}. locus:2153077;,locus:2138043; AT5G51640,AT4G25360 Pfam:DUF231 Leaf senescence protein-like (Os01g0914800 protein) Q8LQG0 Q8LQG0_ORYSJ Os01g0914800 Os01g0914800 OsJ_04527 OSNPB_010914800 P0004D12.12 ENOG411DRAN AZG1 Q9SRK7 AZG1_ARATH Adenine/guanine permease AZG1 (AzgA-homolog protein) (Protein AZAGUANINE RESISTANT 1) (AtAzg1) DISRUPTION PHENOTYPE: Resistance to 8-azaadenine and 8-azaguanine but not to other toxic nucleobase analogs. Deficience in the uptake of adenine and guanine. {ECO:0000269|PubMed:19121308}. Resistant to toxic purine analogues-G. Mourad-2009 FUNCTION: Transports natural purines (adenine and guanine) as well as purine analogs. Confers sensitivity to 8-azaadenine and 8-azaguanine (8-azg). {ECO:0000269|PubMed:19121308}. 61669 Adenine/guanine permease AZG1 (AzgA-homolog protein) (Protein AZAGUANINE RESISTANT 1) (AtAzg1) integral component of membrane [GO:0016021]; purine nucleobase transmembrane transporter activity [GO:0005345]; transporter activity [GO:0005215]; adenine transport [GO:0015853]; guanine transport [GO:0015854]; purine nucleobase transport [GO:0006863] locus:2085517; AT3G10960 adenine guanine permease Os05g0332600 protein (Fragment) Q0DJ35,A0A0P0WL58 Q0DJ35_ORYSJ,A0A0P0WL58_ORYSJ Os05g0332600 Os05g0332600 OSNPB_050332600,Os05g0332600 OSNPB_050332600 ENOG411DRAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxidoreductase NAD-binding domain Os01g0120600 protein (Fragment) A0A0P0UXN1 A0A0P0UXN1_ORYSJ Os01g0120600 OSNPB_010120600 ENOG411DRAC A1A6J3 A1A6J3_ARATH tRNA pseudouridine synthase (EC 5.4.99.-) ARA:AT3G06950-MONOMER; 5.4.99.- 36210 tRNA pseudouridine synthase (EC 5.4.99.-) pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119] locus:2077552; AT3G06950 tRNA pseudouridine synthase Os05g0279300 protein C7J2E5 C7J2E5_ORYSJ Os05g0279300 Os05g0279300 OSNPB_050279300 ENOG411DRAB SYP121 Q9ZSD4 SY121_ARATH Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1) pen1-1 mutant plants allowed a sevenfold higher incidence of B. g. hordei penetration compared with wildtype plants as well as a concomitant increase in the incidence of hypersensitive-response-like cell death induced by B. g. hordei.,leaf necrosis dwarfism caused by salicylic acid accumulation Susceptible to Blumeria graminis hordei-P. Schulze-Lefert-2003 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-449836; 37957 Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1) cell plate [GO:0009504]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; SNARE complex [GO:0031201]; trans-Golgi network [GO:0005802]; protein anchor [GO:0043495]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; exocytosis [GO:0006887]; maintenance of protein location in plasma membrane [GO:0072660]; negative regulation of defense response [GO:0031348]; protein targeting to membrane [GO:0006612]; protein targeting to plasma membrane [GO:0072661]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to fungus [GO:0009620]; transpiration [GO:0010148]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906]; vesicle-mediated transport [GO:0016192] locus:2081476; AT3G11820 K08486 syntaxin 1B 2 3 Os03g0787000 protein (Putative syntaxin) (Syntaxin 121, putative, expressed) (cDNA clone:J013049M07, full insert sequence) Q6F3B4 Q6F3B4_ORYSJ Os03g0787000 LOC_Os03g57310 Os03g0787000 OSJNBb0024J04.6 OSNPB_030787000 ENOG411DRAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0543000 protein A0A0P0XI31 A0A0P0XI31_ORYSJ Os08g0543000 OSNPB_080543000 ENOG411DRAD PER19 O22959 PER19_ARATH Peroxidase 19 (Atperox P19) (EC 1.11.1.7) (ATP51) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G34060-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 38228 Peroxidase 19 (Atperox P19) (EC 1.11.1.7) (ATP51) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2055501; AT2G34060 peroxidase NA NA NA NA NA NA NA ENOG411DRAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase Os09g0521100 protein (Fragment) A0A0P0XQP0 A0A0P0XQP0_ORYSJ Os09g0521100 OSNPB_090521100 ENOG411DRAY Q9C534 FB19_ARATH F-box protein At1g30200 41842 F-box protein At1g30200 plasmodesma [GO:0009506]; cytokinin-activated signaling pathway [GO:0009736]; hormone transport [GO:0009914] locus:2009822; AT1G30200 F-box protein F-box family protein-like (Os01g0770400 protein) (cDNA clone:001-016-E07, full insert sequence),Os05g0510400 protein (Putative F-box protein family) (cDNA clone:J013161L06, full insert sequence),Os01g0770400 protein (Fragment) Q94EE7,Q6L541,A0A0P0V8P1 Q94EE7_ORYSJ,Q6L541_ORYSJ,A0A0P0V8P1_ORYSJ Os01g0770400 OSNPB_010770400 P0665A11.16,Os05g0510400 Os05g0510400 OJ1005_B11.4 OsJ_19156 OSNPB_050510400,Os01g0770400 OSNPB_010770400 ENOG411DRAX Q9M358 UVSSA_ARATH UV-stimulated scaffold protein A homolog R-ATH-6781823;R-ATH-6782135;R-ATH-6782210; 75985 UV-stimulated scaffold protein A homolog locus:2076815; AT3G61800 Uncharacterized conserved protein (DUF2043) Os02g0293800 protein (Fragment),Os02g0293800 protein A0A0N7KF47,A0A0P0VHW0 A0A0N7KF47_ORYSJ,A0A0P0VHW0_ORYSJ Os02g0293800 OSNPB_020293800 ENOG411DRAZ PUB44,PUB43 Q9LM76,Q9SFX2 PUB44_ARATH,PUB43_ARATH U-box domain-containing protein 44 (EC 2.3.2.27) (Plant U-box protein 44) (Protein SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1) (RING-type E3 ubiquitin transferase PUB44),U-box domain-containing protein 43 (EC 2.3.2.27) (Plant U-box protein 43) (RING-type E3 ubiquitin transferase PUB43) DISRUPTION PHENOTYPE: Premature senescence under low light conditions accompanied by enhanced ABA biosynthesis, accumulation of AAO3, and reduced photosynthetic capacity. {ECO:0000269|PubMed:19309463}. Early senescence-S. Hoth-2009 FUNCTION: Functions as an E3 ubiquitin-protein ligase. Prevents premature senescence probably by targeting proteins involved in this process for degradation. Promotes the degradation of AAO3 and thus represses abscisic acid (ABA) biosynthesis. {ECO:0000269|PubMed:19309463}.,FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 88380,89109 U-box domain-containing protein 44 (EC 2.3.2.27) (Plant U-box protein 44) (Protein SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1) (RING-type E3 ubiquitin transferase PUB44),U-box domain-containing protein 43 (EC 2.3.2.27) (Plant U-box protein 43) (RING-type E3 ubiquitin transferase PUB43) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; transmembrane receptor protein serine/threonine kinase binding [GO:0070696]; ubiquitin-protein transferase activity [GO:0004842]; leaf senescence [GO:0010150]; negative regulation of abscisic acid biosynthetic process [GO:0090359]; regulation of abscisic acid biosynthetic process [GO:0010115]; regulation of chlorophyll biosynthetic process [GO:0010380]; regulation of chlorophyll catabolic process [GO:0010271],plasma membrane [GO:0005886]; ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Expressed in leaves, root vasculature and guard cells. {ECO:0000269|PubMed:19309463}. locus:2030462;,locus:2014584; AT1G20780,AT1G76390 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411DRAS CAD3,CAD9,CAD2,CAD6 Q9SJ10,P42734,Q9SJ25,O65621,A0A1P8B363,A0A1P8B369,A0A1P8B366 CADH3_ARATH,CADH9_ARATH,CADH2_ARATH,CADH6_ARATH,A0A1P8B363_ARATH,A0A1P8B369_ARATH,A0A1P8B366_ARATH Cinnamyl alcohol dehydrogenase 3 (AtCAD3) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 9 (AtCAD9) (EC 1.1.1.195),Cinnamyl alcohol dehydrogenase 2 (AtCAD2) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 6 (AtCAD6) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase-like protein A),Cinnamyl alcohol dehydrogenase 6 FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000269|PubMed:14745009}.,FUNCTION: Involved in lignin biosynthesis. May catalyze the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol. {ECO:0000269|PubMed:16832689}.,FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000250|UniProtKB:O49482}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. ARA:AT2G21890-MONOMER;,ARA:AT4G39330-MONOMER;,ARA:AT2G21730-MONOMER;,ARA:AT4G37970-MONOMER; 1.1.1.195 40886,38934,40909,39017,28079,31953,27977 Cinnamyl alcohol dehydrogenase 3 (AtCAD3) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 9 (AtCAD9) (EC 1.1.1.195),Cinnamyl alcohol dehydrogenase 2 (AtCAD2) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 6 (AtCAD6) (EC 1.1.1.195) (Cinnamyl alcohol dehydrogenase-like protein A),Cinnamyl alcohol dehydrogenase 6 cinnamyl-alcohol dehydrogenase activity [GO:0045551]; sinapyl alcohol dehydrogenase activity [GO:0052747]; zinc ion binding [GO:0008270]; lignin biosynthetic process [GO:0009809],apoplast [GO:0048046]; cinnamyl-alcohol dehydrogenase activity [GO:0045551]; sinapyl alcohol dehydrogenase activity [GO:0052747]; zinc ion binding [GO:0008270]; lignin biosynthetic process [GO:0009809]; response to cytokinin [GO:0009735],oxidoreductase activity [GO:0016491]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in the root tips. Expressed in the apical meristematic regions, leaf veins and at the base of the trichomes. Expressed at the base of the stems. Expressed in the abscission zones of newly formed siliques. {ECO:0000269|PubMed:16832689, ECO:0000269|PubMed:17467016}.,TISSUE SPECIFICITY: Expressed in the vasculature of the primary root and elongation regions. Expressed in the hypocotyl, cotyledon veins, vasculature of the first rosette leaves, and hydathodes. In stems, expressed in the vascular cambium, interfascicular cambium, developing xylem, and phloem. Expressed in the entire floral organs at late developing stage, and in the abscission, style and stigmatic regions of siliques and seed funicules. {ECO:0000269|PubMed:16832689, ECO:0000269|PubMed:17467016}.,TISSUE SPECIFICITY: Expressed at the base of the stems. {ECO:0000269|PubMed:16832689, ECO:0000269|PubMed:17467016}.,TISSUE SPECIFICITY: Expressed in the primary and lateral roots, and root caps. Expressed in the hypocotyl, cotyledon veins and hydathodes. In stems, expressed in the vascular cambium, interfascicular cambium and developing xylem. Expressed in the style, anthers, stamen filaments, vascular tissues of sepals, stigmatic regions in flowers, and abscission and style regions of siliques. {ECO:0000269|PubMed:16832689, ECO:0000269|PubMed:17467016}. locus:2052494;,locus:2136278;,locus:2052516;,locus:2120968; AT2G21890,AT4G39330,AT2G21730,AT4G37970 Cinnamyl alcohol dehydrogenase Probable cinnamyl alcohol dehydrogenase 6 (OsCAD6) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 3 (OsCAD3) (EC 1.1.1.195),Probable cinnamyl alcohol dehydrogenase 5 (OsCAD5) (EC 1.1.1.195),Cinnamyl alcohol dehydrogenase 7 (OsCAD7) (EC 1.1.1.195) (Protein FLEXIBLE CULM 1) Q7XWU3,Q337Y2,Q0J6T3,Q0JA75 CADH6_ORYSJ,CADH3_ORYSJ,CADH5_ORYSJ,CADH7_ORYSJ CAD6 Os04g0229100 LOC_Os04g15920 OSJNBa0065B15.8,CAD3 Os10g0430200 LOC_Os10g29470 OsJ_31603,CAD5 Os08g0270400 Os08g0270433 Os08g0270466 LOC_Os08g16910 OsJ_26689,CAD7 FC1 Os04g0612700 LOC_Os04g52280 OSJNBa0070C17.13 DISRUPTION PHENOTYPE: Reduced lignin content, late heading time, semi-dwarf and flexible culm. {ECO:0000269|PubMed:19116760}. FUNCTION: Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. {ECO:0000250|UniProtKB:O49482}.,FUNCTION: Involved in lignin biosynthesis. May catalyze the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol. {ECO:0000269|PubMed:19116760}. ENOG411DRAT UNG Q9LIH6,Q9SI87 UNG_ARATH,UNGI_ARATH Uracil-DNA glycosylase, mitochondrial (AtUNG) (UDG) (EC 3.2.2.27),Probable inactive uracil-DNA glycosylase, mitochondrial DISRUPTION PHENOTYPE: No visible phenotype under standard growth conditions. Increased resistance to 5-fluorouracil cytotoxicity. {ECO:0000269|PubMed:20056608}. Resistant to 5-fluorouracil-T. Roldan-Arjona-2010 FUNCTION: Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. More active on U:G, U:T and U:C mispairs than on U:A pairs. Highly specific for uracil and no activity with 5-substituted uracil or cytosine derivatives. Required for initiation of base excision repair (BER) of uracil. {ECO:0000269|PubMed:19625491, ECO:0000269|PubMed:20056608}.,FUNCTION: Probable inactive paralog of AtUNG (AC Q9LIH6) generated by a gene duplication event and subsequently disrupted by at least two transposon insertions. {ECO:0000269|PubMed:20056608}. R-ATH-110329;R-ATH-110357; 3.2.2.27; 3.2.2.27 36289,18494 Uracil-DNA glycosylase, mitochondrial (AtUNG) (UDG) (EC 3.2.2.27),Probable inactive uracil-DNA glycosylase, mitochondrial mitochondrion [GO:0005739]; uracil DNA N-glycosylase activity [GO:0004844]; base-excision repair, AP site formation via deaminated base removal [GO:0097510],uracil DNA N-glycosylase activity [GO:0004844]; base-excision repair, AP site formation via deaminated base removal [GO:0097510] locus:2086904;,locus:2063555; AT3G18630,AT2G10550 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (By similarity) Uracil-DNA glycosylase (UDG) (EC 3.2.2.27) Q7XQA5 Q7XQA5_ORYSJ Os04g0673400 OsJ_16593 OSJNBa0018M05.3 OSNPB_040673400 FUNCTION: Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. {ECO:0000256|HAMAP-Rule:MF_03166, ECO:0000256|RuleBase:RU003780}. ENOG411DRAW Q6NMR9,A0A1P8BCZ7 GDL84_ARATH,A0A1P8BCZ7_ARATH GDSL esterase/lipase At5g45920 (EC 3.1.1.-),SGNH hydrolase-type esterase superfamily protein 3.1.1.- 27154,22388 GDSL esterase/lipase At5g45920 (EC 3.1.1.-),SGNH hydrolase-type esterase superfamily protein hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2152395; AT5G45920 GDSL esterase lipase Os01g0214200 protein (cDNA clone:006-211-A03, full insert sequence),Os04g0269700 protein (Fragment),Os09g0121900 protein,Os01g0543400 protein (Fragment),Os06g0156400 protein Q9LHY3,C7J119,A0A0P0XIW7,A0A0P0V3Q3,A0A0N7KLK1 Q9LHY3_ORYSJ,C7J119_ORYSJ,A0A0P0XIW7_ORYSJ,A0A0P0V3Q3_ORYSJ,A0A0N7KLK1_ORYSJ Os01g0214200 OsJ_00864 OSJNBa0038J17.26 OSNPB_010214200 P0515G01.4,Os04g0269700 Os04g0269700 OSNPB_040269700,Os09g0121900 OSNPB_090121900,Os01g0543400 OSNPB_010543400,Os06g0156400 OSNPB_060156400 ENOG411DRAV EIF2A Q9FE78,Q9SIZ2,A2RVK1 IF2A_ARATH,IF2AH_ARATH,A2RVK1_ARATH Eukaryotic translation initiation factor 2 subunit alpha (eIF2-alpha),Eukaryotic translation initiation factor 2 subunit alpha homolog,At2g40290 (Eukaryotic translation initiation factor 2 subunit 1) FUNCTION: Functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S pre-initiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B. {ECO:0000250|UniProtKB:P20459}. R-ATH-156827;R-ATH-382556;R-ATH-72695;R-ATH-72702;R-ATH-72731; 38801,38748,27681 Eukaryotic translation initiation factor 2 subunit alpha (eIF2-alpha),Eukaryotic translation initiation factor 2 subunit alpha homolog,At2g40290 (Eukaryotic translation initiation factor 2 subunit 1) cytosol [GO:0005829]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 2 complex [GO:0005850]; eukaryotic translation initiation factor 2B complex [GO:0005851]; multi-eIF complex [GO:0043614]; ribosome [GO:0005840]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417]; translational initiation [GO:0006413],cytosol [GO:0005829]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 2 complex [GO:0005850]; eukaryotic translation initiation factor 2B complex [GO:0005851]; multi-eIF complex [GO:0043614]; nucleus [GO:0005634]; ribosome [GO:0005840]; mRNA binding [GO:0003729]; ribosome binding [GO:0043022]; translation initiation factor activity [GO:0003743]; translational initiation [GO:0006413],translation initiation factor activity [GO:0003743] locus:2153464;,locus:2063093; AT5G05470,AT2G40290 eukaryotic translation initiation factor 2 Os07g0692800 protein (Putative eukaryotic translation initiation factor 2 alpha subunit eIF2),Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed (Os03g0296400 protein) (cDNA clone:006-208-D01, full insert sequence) (cDNA clone:J033040F15, full insert sequence) Q84NQ3,Q10MT2 Q84NQ3_ORYSJ,Q10MT2_ORYSJ P0034A04.122 Os07g0692800 OsJ_25681 OSNPB_070692800,LOC_Os03g18510 Os03g0296400 OsJ_10487 OSNPB_030296400 ENOG411EIRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3317) Os07g0446600 protein Q0D6S2 Q0D6S2_ORYSJ Os07g0446600 Os07g0446600 OSNPB_070446600 ENOG411EIRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0888800 protein (cDNA clone:J023046H19, full insert sequence) Q8LQI0 Q8LQI0_ORYSJ Os01g0888800 Os01g0888800 B1099D03.32 OsJ_04349 OSNPB_010888800 ENOG411EIRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Orf165 protein Q35961 Q35961_ORYSJ orf165 ENOG411EIRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial regulatory helix-turn-helix proteins AraC family NA NA NA NA NA NA NA ENOG411EIRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS NA NA NA NA NA NA NA ENOG411EIRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0784400 protein Q6K7C9 Q6K7C9_ORYSJ Os02g0784400 OJ1311_D08.40 OJ1715_H01.20 OSNPB_020784400 ENOG411EIRJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0566075 protein (Fragment) A0A0P0XRB5 A0A0P0XRB5_ORYSJ Os09g0566075 OSNPB_090566075 ENOG411EIRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0403501 protein (Fragment) A0A0P0VYL1 A0A0P0VYL1_ORYSJ Os03g0403501 OSNPB_030403501 ENOG411EIRD Q9M8K9,A0A1P8B981 Q9M8K9_ARATH,A0A1P8B981_ARATH F28L1.2 protein (Transmembrane protein),Transmembrane protein 8865,7389 F28L1.2 protein (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2082435; AT3G06090 NA NA NA NA NA NA NA NA ENOG411EIRE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0223880 protein A0A0P0Y067 A0A0P0Y067_ORYSJ Os11g0223880 OSNPB_110223880 ENOG411EIRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0638700 protein (cDNA clone:001-108-D10, full insert sequence) Q0J9P5 Q0J9P5_ORYSJ Os04g0638700 Os04g0638700 OsJ_16338 OSNPB_040638700 ENOG411EIR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0803800 protein Q69SI7 Q69SI7_ORYSJ Os02g0803800 OSNPB_020803800 P0689B12.32 ENOG411EIR4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA retrotransposon NA NA NA NA NA NA NA ENOG411EIR5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EIR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0342500 protein (Fragment) A0A0P0V2E1 A0A0P0V2E1_ORYSJ Os01g0342500 OSNPB_010342500 ENOG411EIR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EIR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0327150 protein (Fragment),Os10g0377450 protein (Fragment),Os09g0281750 protein (Fragment),Os09g0527650 protein (Fragment),Os05g0280350 protein (Fragment) A0A0P0XKV6,A0A0P0XTQ6,A0A0P0XLB3,A0A0P0XPD5,A0A0P0WK15 A0A0P0XKV6_ORYSJ,A0A0P0XTQ6_ORYSJ,A0A0P0XLB3_ORYSJ,A0A0P0XPD5_ORYSJ,A0A0P0WK15_ORYSJ Os09g0327150 OSNPB_090327150,Os10g0377450 OSNPB_100377450,Os09g0281750 OSNPB_090281750,Os09g0527650 OSNPB_090527650,Os05g0280350 OSNPB_050280350 ENOG411E7V8 GASA12 Q6GKX7 GASAC_ARATH Gibberellin-regulated protein 12 (GAST1 protein homolog 12) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 11671 Gibberellin-regulated protein 12 (GAST1 protein homolog 12) extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740] locus:2052876; AT2G30810 Gibberellin regulated protein Os03g0249550 protein,Os10g0115550 protein (Fragment) B9F6T1,A0A0P0XRU0 B9F6T1_ORYSJ,A0A0P0XRU0_ORYSJ Os03g0249550 OsJ_10147 OSNPB_030249550,Os10g0115550 OSNPB_100115550 ENOG411E7V6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0395700 protein Q0JDL3 Q0JDL3_ORYSJ Os04g0395700 Os04g0395700 OSNPB_040395700 ENOG411E7V7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI NA NA NA NA NA NA NA ENOG411E7V4 BHLH35,MUL3.10 Q2HIV9,F4KAJ5,A0A1P8BCX2,F4KAJ4 BH035_ARATH,F4KAJ5_ARATH,A0A1P8BCX2_ARATH,F4KAJ4_ARATH Transcription factor bHLH35 (Basic helix-loop-helix protein 35) (AtbHLH35) (bHLH 35) (Transcription factor EN 41) (bHLH transcription factor bHLH035),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 28090,30450,25188,27933 Transcription factor bHLH35 (Basic helix-loop-helix protein 35) (AtbHLH35) (bHLH 35) (Transcription factor EN 41) (bHLH transcription factor bHLH035),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2175599; AT5G57150 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E7V5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7V2 Q8LC44,A8MR87,A0A1P8B754,Q67Y22,Q9ZUL1,Q0WR34 Q8LC44_ARATH,A8MR87_ARATH,A0A1P8B754_ARATH,Q67Y22_ARATH,Q9ZUL1_ARATH,Q0WR34_ARATH Uncharacterized protein At4g34265,Caspase-6 protein,Uncharacterized protein,At2g15000 (Caspase-6 protein) (Expressed protein),Caspase-6 protein (Uncharacterized protein At2g15000) 10256,11018,10889,9885,10353,9983 Uncharacterized protein At4g34265,Caspase-6 protein,Uncharacterized protein,At2g15000 (Caspase-6 protein) (Expressed protein),Caspase-6 protein (Uncharacterized protein At2g15000) locus:505006558;,locus:2055787; AT4G34265,AT2G15000 Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411E7V3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E7V0 ATP9,atp9 P60112,P93278,Q304C3 ATP9_ARATH,M040_ARATH,Q304C3_ARATH ATP synthase subunit 9, mitochondrial (Lipid-binding protein),Uncharacterized ATP synthase C chain-like protein (ORF315),ATP synthase subunit 9, mitochondrial FUNCTION: This protein is one of the chains of the nonenzymatic membrane component (F0) of mitochondrial ATPase. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07671) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. 8936,34175,8841 ATP synthase subunit 9, mitochondrial (Lipid-binding protein),Uncharacterized ATP synthase C chain-like protein (ORF315),ATP synthase subunit 9, mitochondrial integral component of membrane [GO:0016021]; mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [GO:0000276]; ATP binding [GO:0005524]; lipid binding [GO:0008289]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP synthesis coupled proton transport [GO:0015986],integral component of membrane [GO:0016021]; mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [GO:0000276]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP synthesis coupled proton transport [GO:0015986],integral component of membrane [GO:0016021]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrion [GO:0005739]; proton-transporting ATP synthase complex, coupling factor F(o) [GO:0045263]; hydrogen ion transmembrane transporter activity [GO:0015078]; lipid binding [GO:0008289]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP synthesis coupled proton transport [GO:0015986] locus:504954740;,locus:3437277;locus:504954591; ATMG01080,ATMG00040,AT2G07671ATMG01080; ATP synthase subunit 9 mitochondrial ATP synthase subunit 9, mitochondrial (Lipid-binding protein),Os01g0899275 protein (Fragment),Os01g0899350 protein P0C519,A0A0P0VBQ1,A0A0P0VBJ7 ATP9_ORYSJ,A0A0P0VBQ1_ORYSJ,A0A0P0VBJ7_ORYSJ ATP9,Os01g0899275 OSNPB_010899275,Os01g0899350 OSNPB_010899350 FUNCTION: This protein is one of the chains of the nonenzymatic membrane component (F0) of mitochondrial ATPase. ENOG411E7V1 A8MR54 A8MR54_ARATH Beta-1,4-xylosidase 10604 Beta-1,4-xylosidase locus:4010713761; AT3G19615 NA NA NA NA NA NA NA NA ENOG411E7VZ Q1PEK3,Q9LHJ4 Q1PEK3_ARATH,Q9LHJ4_ARATH Transmembrane protein 23021,23868 Transmembrane protein integral component of membrane [GO:0016021] locus:2091291; AT3G29300 NA NA NA NA NA NA NA NA ENOG411E7VX A0A1P8BGZ5,F4K158 A0A1P8BGZ5_ARATH,F4K158_ARATH RPM1-interacting protein 4 (RIN4) family protein 15604,11511 RPM1-interacting protein 4 (RIN4) family protein integral component of membrane [GO:0016021] locus:1009023455; AT5G19473 Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411E7VV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Os12g0437800 protein (Subitilisin-chymotrypsin inhibitor),Os12g0548401 protein (Os12g0548450 protein) (Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed) (cDNA, clone: J065025E22, full insert sequence),Os12g0548501 protein (Os12g0548650 protein),Os12g0548700 protein (Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed) (cDNA clone:001-019-G06, full insert sequence) Q5EII3,Q2QNZ6,B9GDL8,Q2QNZ3 Q5EII3_ORYSJ,Q2QNZ6_ORYSJ,B9GDL8_ORYSJ,Q2QNZ3_ORYSJ Sci1 Os12g0437800 OSNPB_120437800,Os12g0548401 LOC_Os12g36210 Os12g0548450 OsJ_36417 OSNPB_120548401,Os12g0548501 Os12g0548650 OsJ_36418 OSNPB_120548501,Os12g0548700 LOC_Os12g36240 Os12g0548700 OsJ_36419 OSNPB_120548700 ENOG411E7VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0327500 protein (cDNA clone:002-133-A04, full insert sequence) Q9AS11 Q9AS11_ORYSJ Os01g0327500 Os01g0327500 B1135C02.48 OsJ_01552 OSNPB_010327500 P0537A05.23 ENOG411E7VT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0432201 protein (cDNA, clone: J100045I04, full insert sequence),Os07g0432333 protein (cDNA, clone: J100007M12, full insert sequence),Os07g0429700 protein (cDNA, clone: J065048H23, full insert sequence),Os07g0431160 protein,Os07g0429600 protein,Os07g0430501 protein (Fragment) Q6YTM0,Q6YTL9,Q6ZL66,A0A0P0X635,A0A0N7KNC3,A0A0P0X5P0 Q6YTM0_ORYSJ,Q6YTL9_ORYSJ,Q6ZL66_ORYSJ,A0A0P0X635_ORYSJ,A0A0N7KNC3_ORYSJ,A0A0P0X5P0_ORYSJ Os07g0432201 OSJNBa0067K15.33 OSNPB_070432201,Os07g0432333 OJ1051_D12.1 OSJNBa0067K15.35 OSNPB_070432333,Os07g0429700 OJ1423_A11.14 OSNPB_070429700,Os07g0431160 OSNPB_070431160,Os07g0429600 OSNPB_070429600,Os07g0430501 OSNPB_070430501 ENOG411E7VU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD dependent oxidoreductase NA NA NA NA NA NA NA ENOG411E7VR Q9LSN9,F4J3Y5,Q3EB54 Q9LSN9_ARATH,F4J3Y5_ARATH,Q3EB54_ARATH Plant self-incompatibility protein S1 family (Self-incompatibility protein-like protein),Plant self-incompatibility protein S1 family protein,Plant self-incompatibility protein S1 family 15641,12666,16226 Plant self-incompatibility protein S1 family (Self-incompatibility protein-like protein),Plant self-incompatibility protein S1 family protein,Plant self-incompatibility protein S1 family locus:2086077;,locus:2086087;,locus:2086107; AT3G17080,AT3G16960,AT3G16970 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411E7VP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Choline/ethanolamine kinase NA NA NA NA NA NA NA ENOG411E7VN MLM24.4 Q9M0P4,Q9LW65,F4IJB6,F4JDR1,F4I2P2 Q9M0P4_ARATH,Q9LW65_ARATH,F4IJB6_ARATH,F4JDR1_ARATH,F4I2P2_ARATH Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein AT4g09490),Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Beta-galactosidase related protein,RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,Ribonuclease H-like superfamily protein 18873,22373,45397,18481,33339 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Uncharacterized protein AT4g09490),Polynucleotidyl transferase, ribonuclease H-like superfamily protein,Beta-galactosidase related protein,RNA-directed DNA polymerase (Reverse transcriptase)-related family protein,Ribonuclease H-like superfamily protein nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; transferase activity [GO:0016740],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740],nucleic acid binding [GO:0003676],RNA-directed DNA polymerase activity [GO:0003964],nucleic acid binding [GO:0003676]; RNA-DNA hybrid ribonuclease activity [GO:0004523] locus:2133717;,locus:2090950;,locus:504955899;,locus:504955762;,locus:2201941; AT4G09490,AT3G23320,AT2G06845,AT3G26855,AT1G10000 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E7VM Q9SSS6 Q9SSS6_ARATH At1g52720 (F6D8.3) (Uncharacterized protein At1g52720) 12737 At1g52720 (F6D8.3) (Uncharacterized protein At1g52720) plastid [GO:0009536] locus:2035074; AT1G52720 NA NA NA NA NA NA NA NA ENOG411E7VJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA ATPase containing von Willebrand factor type A (VWA) domain-like protein (Os02g0542500 protein) (cDNA clone:002-148-G10, full insert sequence) Q6ESZ0 Q6ESZ0_ORYSJ Os02g0542500 Os02g0542500 OsJ_07060 OSNPB_020542500 P0472F10.16 ENOG411E7VK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7VH Q8L9M7 Q8L9M7_ARATH At5g19875 (Transmembrane protein) (Uncharacterized protein At5g19875/F28I16.2) 14334 At5g19875 (Transmembrane protein) (Uncharacterized protein At5g19875/F28I16.2) integral component of membrane [GO:0016021]; response to oxidative stress [GO:0006979] locus:505006622; AT5G19875 NA NA NA NA NA NA NA NA ENOG411E7VI TGD5 Q8VY77 TGD5_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic DISRUPTION PHENOTYPE: Growth retardation, reduced rosette size, slightly pale color and early flowering. Deficiency in eukaryotic thylakoid galactolipids and accumulation of trigalactosyldiacylglycerol (TGDG) and phosphatidylcholine (PC). Changed fatty acid profile in leaves with a substential increase in 16:0, 18:1 and 18:2 at the expense of 16:3 and 18:3. {ECO:0000269|PubMed:26410300}. FUNCTION: Facilitates lipid transfer from the outer to the inner plastid envelope by bridging TGD4 with the TGD1,2,3 transport complex. Required for endoplasmic reticulum-to-plastid lipid trafficking as part of the eukaryotic pathway of thylakoid lipid assembly. {ECO:0000269|PubMed:26410300}. 9174 Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; lipid transporter activity [GO:0005319]; endoplasmic reticulum to chloroplast transport [GO:1901965]; ER to chloroplast lipid transport [GO:1990052] locus:504956157; AT1G27695 NA Os12g0507600 protein (Fragment) A0A0P0YAK7 A0A0P0YAK7_ORYSJ Os12g0507600 OSNPB_120507600 ENOG411E7VF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7VG A8MR80 A8MR80_ARATH DNA-directed RNA polymerase subunit beta 12628 DNA-directed RNA polymerase subunit beta DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:4010713918; AT4G30845 NA Os03g0210900 protein (Fragment) A0A0P0VUM9 A0A0P0VUM9_ORYSJ Os03g0210900 OSNPB_030210900 ENOG411E7VD Q9LZB0,F4KI39 Q9LZB0_ARATH,F4KI39_ARATH Uncharacterized protein F8F6_210,Uncharacterized protein 12520,12648 Uncharacterized protein F8F6_210,Uncharacterized protein locus:2150585; AT5G04000 NA NA NA NA NA NA NA NA ENOG411E7VE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os03g0823100 protein (Os03g0823200 protein) (Fragment) C7J066 C7J066_ORYSJ Os03g0823200 Os03g0823100 OSNPB_030823100 ENOG411E7VB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0558900 protein (Putative F1F0-ATPase inhibitor protein) (cDNA clone:001-010-C04, full insert sequence) (cDNA clone:J023116D07, full insert sequence) Q6YZI5 Q6YZI5_ORYSJ Os08g0558900 Os08g0558900 OsJ_28272 OSNPB_080558900 P0562A06.11 ENOG411E7VA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0730500 protein Q5Z418 Q5Z418_ORYSJ Os06g0730500 B1206D04.8 OsJ_22743 OSJNBa0069C14.31 OSNPB_060730500 ENOG411E6X1 Q9ZUB1,Q9ZUB2,Q9LRA9 Q9ZUB1_ARATH,Q9ZUB2_ARATH,Q9LRA9_ARATH At1g23840/F5O8_37 (F5O8.40) (Transmembrane protein),At1g23830/F5O8_36 (F5O8.39) (Transmembrane protein),T23E23.1 (Transmembrane protein) (Uncharacterized protein At1g23850) 37891,39412,40005 At1g23840/F5O8_37 (F5O8.40) (Transmembrane protein),At1g23830/F5O8_36 (F5O8.39) (Transmembrane protein),T23E23.1 (Transmembrane protein) (Uncharacterized protein At1g23850) integral component of membrane [GO:0016021] locus:2034913;,locus:2034908;,locus:2199832; AT1G23840,AT1G23830,AT1G23850 NA NA NA NA NA NA NA NA ENOG411E6X3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0285100 protein A0A0N7KPL1 A0A0N7KPL1_ORYSJ Os08g0285100 OSNPB_080285100 ENOG411E6X2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os01g0354175 protein A0A0P0V2X6 A0A0P0V2X6_ORYSJ Os01g0354175 OSNPB_010354175 ENOG411E6X5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6XX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0733400 protein Q6Z2J2 Q6Z2J2_ORYSJ Os02g0733400 Os02g0733400 OsJ_08282 OSNPB_020733400 P0643A10.33 ENOG411E6XZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P4Hc NA NA NA NA NA NA NA ENOG411E5K7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transporter Os05g0336200 protein A0A0P0WKV1 A0A0P0WKV1_ORYSJ Os05g0336200 OSNPB_050336200 ENOG411E5K5 CAF1-1 Q9SHJ0 CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 (EC 3.1.13.4) FUNCTION: Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity). {ECO:0000250}. 3.1.13.4 40478 Probable CCR4-associated factor 1 homolog 1 (EC 3.1.13.4) CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; negative regulation of translation [GO:0017148]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2009220; AT1G06450 CAF1 family ribonuclease NA NA NA NA NA NA NA ENOG411E37I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E37H Q1G3Z5,F4HPM4 Q1G3Z5_ARATH,F4HPM4_ARATH Copper ion binding / electron carrier protein 30628,42123 Copper ion binding / electron carrier protein electron carrier activity [GO:0009055],anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:1009023108; AT1G45063 copper ion binding NA NA NA NA NA NA NA ENOG411E37K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2Fe-2S iron-sulfur cluster binding domain Ferredoxin Q40684 Q40684_ORYSJ Os05g0443500 B1110B01.18 OSJNBa0020H14.14 OSNPB_050443500 FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. {ECO:0000256|RuleBase:RU364001}. ENOG411E37J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - F-box domain and LRR containing protein OSJNBb0115I09.7 protein (Os04g0268600 protein),F-box domain containing protein (Os11g0538600 protein),Os05g0469300 protein,Os04g0267775 protein Q7XLA5,Q2R342,B9FKP4,A0A0P0W8D4 Q7XLA5_ORYSJ,Q2R342_ORYSJ,B9FKP4_ORYSJ,A0A0P0W8D4_ORYSJ OSJNBb0115I09.7 Os04g0268600 OSNPB_040268600,Os11g0538600 LOC_Os11g33210 Os11g0538600 OSNPB_110538600,Os05g0469300 OsJ_18873 OSNPB_050469300,Os04g0267775 OSNPB_040267775 ENOG411E37M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA harpin-induced protein 1 domain containing protein Os01g0909000 protein,Os01g0908900 protein Q8LQJ2,A0A0P0VBZ3 Q8LQJ2_ORYSJ,A0A0P0VBZ3_ORYSJ Os01g0909000 B1417F08.44 OSNPB_010909000 P0456E05.17,Os01g0908900 OSNPB_010908900 ENOG411E37N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) Os05g0296800 protein (Fragment),Os11g0670100 protein,Os05g0469900 protein (Fragment) A0A0P0WK90,A0A0P0Y563,A0A0N7KKY1 A0A0P0WK90_ORYSJ,A0A0P0Y563_ORYSJ,A0A0N7KKY1_ORYSJ Os05g0296800 OSNPB_050296800,Os11g0670100 OSNPB_110670100,Os05g0469900 OSNPB_050469900 ENOG411E37A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os12g0472800 protein (Transposon protein, putative, CACTA, En/Spm sub-class, expressed) (cDNA clone:001-113-C07, full insert sequence) Q2QR52 Q2QR52_ORYSJ LOC_Os12g28770 Os12g0472800 OsJ_36055 OSNPB_120472800 ENOG411E37C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA delta tubulin NA NA NA NA NA NA NA ENOG411E37B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E37E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Repeat of unknown function (DUF1126) NA NA NA NA NA NA NA ENOG411E37D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic cytochrome b561 NA NA NA NA NA NA NA ENOG411E37G Q8RWF2 Q8RWF2_ARATH Dynamin (Uncharacterized protein At4g17540) 31749 Dynamin (Uncharacterized protein At4g17540) locus:2129166; AT4G17540 NA Expressed protein (Os10g0563400 protein) (cDNA clone:J033109B11, full insert sequence) Q7XC40 Q7XC40_ORYSJ LOC_Os10g41380 Os10g0563400 OsJ_32478 OSJNBa0027P10.2 OSNPB_100563400 ENOG411E37F ERF003 Q94AW5 ERF03_ARATH Ethylene-responsive transcription factor ERF003 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 20606 Ethylene-responsive transcription factor ERF003 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2146985; AT5G25190 Transcription factor NA NA NA NA NA NA NA ENOG411E37Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os05g0497300 protein (Putative ethylene-responsive element binding factor) (cDNA clone:J023061G02, full insert sequence) Q75K82 Q75K82_ORYSJ Os05g0497300 Os05g0497300 OJ1118_C04.10 OSNPB_050497300 ENOG411E37X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E37Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os05g0442400 protein (Putative myb-like transcription factor) (cDNA clone:002-124-C08, full insert sequence),Os05g0442100 protein Q6F2M6,A0A0P0WMU8 Q6F2M6_ORYSJ,A0A0P0WMU8_ORYSJ Os05g0442400 Os05g0442400 B1110B01.12 OsJ_18706 OSJNBa0020H14.7 OSNPB_050442400,Os05g0442100 OSNPB_050442100 ENOG411E37P Q0WLF7,A0A1P8AVC2 Q0WLF7_ARATH,A0A1P8AVC2_ARATH At1g61667,Uncharacterized protein 17384,21501 At1g61667,Uncharacterized protein locus:505006197; AT1G61667 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411E37R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation Two-component response regulator ORR30 (Protein EARLY HEADING DATE 1) (Two-component response regulator EHD1) Q7Y0W5 EHD1_ORYSJ EHD1 RR30 Os10g0463400 LOC_Os10g32600 OsJ_31808 OSJNBa0071K18.25 FUNCTION: Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates HD3A and other FT-like genes independently from HD1. May also activate MADS-box transcription factors involved in flowering regulation (PubMed:15078816). Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:15078816}. ENOG411E37U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box protein interaction domain containing protein (Os12g0493200 protein),F-box domain containing protein (Os12g0493732 protein),F-box domain containing protein, expressed (Os12g0492900 protein),Os08g0492900 protein (Stripe rust resistance protein-like),Os08g0493200 protein,Os12g0493566 protein,Os08g0493450 protein,Os12g0494500 protein,Os08g0493600 protein Q2QQI2,Q2QQH8,Q2QQI5,Q6Z8T8,Q6Z8T4,A0A0P0YA59,A0A0P0XHF4,A0A0P0YAA2,A0A0P0XHP6 Q2QQI2_ORYSJ,Q2QQH8_ORYSJ,Q2QQI5_ORYSJ,Q6Z8T8_ORYSJ,Q6Z8T4_ORYSJ,A0A0P0YA59_ORYSJ,A0A0P0XHF4_ORYSJ,A0A0P0YAA2_ORYSJ,A0A0P0XHP6_ORYSJ Os12g0493200 LOC_Os12g30950 OSNPB_120493200,Os12g0493732 LOC_Os12g30990 OsJ_36153 OSNPB_120493732,LOC_Os12g30920 Os12g0492900 OSNPB_120492900,P0686H11.19 Os08g0492900 OSNPB_080492900,P0686H11.23 Os08g0493200 OSNPB_080493200,Os12g0493566 OSNPB_120493566,Os08g0493450 OSNPB_080493450,Os12g0494500 OSNPB_120494500,Os08g0493600 OSNPB_080493600 ENOG411E379 Q9LEY9 NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein (Nhp2-like protein) "FUNCTION: Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine (""psi"") residues may serve to stabilize the conformation of rRNAs (By similarity). {ECO:0000250}." 16948 H/ACA ribonucleoprotein complex subunit 2-like protein (Nhp2-like protein) box H/ACA snoRNP complex [GO:0031429]; nucleolus [GO:0005730]; small nucleolar ribonucleoprotein complex [GO:0005732]; box H/ACA snoRNA binding [GO:0034513]; snoRNA binding [GO:0030515]; cleavage involved in rRNA processing [GO:0000469]; maturation of LSU-rRNA [GO:0000470]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120]; translation [GO:0006412] locus:2181514; AT5G08180 H ACA ribonucleoprotein complex subunit Os06g0274200 protein (Putative nucleolar protein family A member 2) (cDNA clone:J033011J22, full insert sequence),Os02g0728600 protein (Fragment) Q9FP19,A0A0N7KG11 Q9FP19_ORYSJ,A0A0N7KG11_ORYSJ Os06g0274200 Os06g0274200 OsJ_20951 OSNPB_060274200 P0038C05.6 P0676F10.17,Os02g0728600 OSNPB_020728600 ENOG411E378 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Os01g0706800 protein (Fragment) A0A0P0V7D7 A0A0P0V7D7_ORYSJ Os01g0706800 OSNPB_010706800 ENOG411E370 RAX3 Q9M2Y9 RAX3_ARATH Transcription factor RAX3 (Myb-related protein 84) (AtMYB84) (Protein REGULATOR OF AXILLARY MERISTEMS 3) FUNCTION: Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. 35578 Transcription factor RAX3 (Myb-related protein 84) (AtMYB84) (Protein REGULATOR OF AXILLARY MERISTEMS 3) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. locus:2097335; AT3G49690 Transcription factor NA NA NA NA NA NA NA ENOG411E375 MOP10.9 Q94AX7,Q8VZI9,Q9FFG0,F4K0Q7 Q94AX7_ARATH,Q8VZI9_ARATH,Q9FFG0_ARATH,F4K0Q7_ARATH AT5g05550/MOP10_9 (Sequence-specific DNA binding transcription factor),AT3g11100/F11B9_105 (Sequence-specific DNA binding transcription factor),AT5G05550 protein (Gb|AAF01512.1) (Sequence-specific DNA binding transcription factor),Sequence-specific DNA binding transcription factor 28192,28386,28417,28562 AT5g05550/MOP10_9 (Sequence-specific DNA binding transcription factor),AT3g11100/F11B9_105 (Sequence-specific DNA binding transcription factor),AT5G05550 protein (Gb|AAF01512.1) (Sequence-specific DNA binding transcription factor),Sequence-specific DNA binding transcription factor nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355],transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2074658;,locus:2169722; AT5G05550,AT3G11100 Transcription factor NA NA NA NA NA NA NA ENOG411E377 O48683 O48683_ARATH F3I6.9 protein (Triadin) 59547 F3I6.9 protein (Triadin) plasmodesma [GO:0009506] locus:2032487; AT1G24160 NA NA NA NA NA NA NA NA ENOG411E376 MORF1 O49429 MORF1_ARATH Multiple organellar RNA editing factor 1, mitochondrial (RNA editing-interacting protein 8) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. FUNCTION: Involved in organellar RNA editing. Required for the processing of numerous RNA editing sites in mitochondria (PubMed:22411807, PubMed:23818871). Binds to the mitochondrial MEF19 and MEF21 factors, two pentatricopeptide repeat-containing proteins involved in RNA editing (PubMed:22411807). {ECO:0000269|PubMed:22411807, ECO:0000269|PubMed:23818871}. 45157 Multiple organellar RNA editing factor 1, mitochondrial (RNA editing-interacting protein 8) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; chloroplast RNA modification [GO:1900865]; mitochondrial RNA modification [GO:1900864]; mRNA processing [GO:0006397] locus:2119782; AT4G20020 NA Expressed protein (Os11g0216400 protein) Q2R8U1 Q2R8U1_ORYSJ Os11g0216400 LOC_Os11g11020 Os11g0216400 OsJ_33375 OSNPB_110216400 ENOG411EK7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: pleckstrin homology domain containing family M NA NA NA NA NA NA NA ENOG411EK7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411EK7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase At4g08850 NA NA NA NA NA NA NA ENOG411EK7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RRM NA NA NA NA NA NA NA ENOG411EK7G F4JUG3 F4JUG3_ARATH Nucleoporin (DUF3414) 219488 Nucleoporin (DUF3414) nuclear pore inner ring [GO:0044611]; structural constituent of nuclear pore [GO:0017056]; protein import into nucleus [GO:0006606]; RNA export from nucleus [GO:0006405] locus:2141767; AT4G38760 Inherit from NOG: mRNA transport NA NA NA NA NA NA NA ENOG411EK7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tyrosine phosphatase family NA NA NA NA NA NA NA ENOG411EK7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCA1 C Terminus (BRCT) domain Os05g0486600 protein (Fragment) A0A0P0WNT7 A0A0P0WNT7_ORYSJ Os05g0486600 OSNPB_050486600 ENOG411EK7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein VAR3 chloroplastic-like Os01g0815700 protein (Putative ZnF_RBZ domain protein) Q5N755 Q5N755_ORYSJ Os01g0815700 Os01g0815700 OSJNBa0085D07.40 OSNPB_010815700 ENOG411EK7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxin thioredoxin reductase variable alpha chain NA NA NA NA NA NA NA ENOG411EK7Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ferredoxin thioredoxin reductase variable alpha chain Os02g0638300 protein (Putative ferredoxin-thioredoxin reductase) (cDNA clone:002-133-G12, full insert sequence) Q6H5V4 Q6H5V4_ORYSJ Os02g0638300 Os02g0638300 OsJ_07663 OSJNBa0014E22.28 OSNPB_020638300 P0010C01.4 ENOG411EK7Y Q9SL76,F4IUD7 P2C19_ARATH,F4IUD7_ARATH Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein [Includes: Probable protein phosphatase 2C 19 (AtPP2C19) (EC 3.1.3.16); Probable inactive cyclic nucleotide-dependent protein kinase At2g20050],Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein R-ATH-70895; 3.1.3.16 121389,121088 Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein [Includes: Probable protein phosphatase 2C 19 (AtPP2C19) (EC 3.1.3.16); Probable inactive cyclic nucleotide-dependent protein kinase At2g20050],Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein kinase activity [GO:0004672] locus:2061673; AT2G20050 Protein phosphatase 2C and cyclic nucleotide-binding kinase domain-containing Os02g0281000 protein (Putative PKG-Ib),Os02g0281000 protein (Fragment) Q6K3D4,A0A0P0VHM9 Q6K3D4_ORYSJ,A0A0P0VHM9_ORYSJ P0669G10.18-1 Os02g0281000 OsJ_06259 OSJNBa0063E14.1-1 OSNPB_020281000,Os02g0281000 OSNPB_020281000 ENOG411EK7Z Q8GXX6,F4HUG4 Q8GXX6_ARATH,F4HUG4_ARATH Putative mandelonitrile lyase (RING/U-box superfamily protein),RING/U-box superfamily protein 38353,33056 Putative mandelonitrile lyase (RING/U-box superfamily protein),RING/U-box superfamily protein lyase activity [GO:0016829],integral component of membrane [GO:0016021] locus:2035819; AT1G14180 Inherit from COG: oxidoreductase NA NA NA NA NA NA NA ENOG411EK70 FBL11 Q8S8F2 FBL11_ARATH BTB/POZ domain-containing protein FBL11 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 104873 BTB/POZ domain-containing protein FBL11 protein ubiquitination [GO:0016567] AT2G36370 BTB POZ domain-containing protein NA NA NA NA NA NA NA ENOG411EK75 Q8LA96 Q8LA96_ARATH Putative RRM-containing protein (Putative splicing regulatory protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) 33548 Putative RRM-containing protein (Putative splicing regulatory protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) cytosol [GO:0005829]; RNA binding [GO:0003723]; response to cytokinin [GO:0009735] locus:2129401; AT4G17720 RNA recognition OSJNBa0009P12.34 protein (Os04g0594400 protein) (cDNA clone:J013089A03, full insert sequence) Q0JAJ6 Q0JAJ6_ORYSJ Os04g0594400 Os04g0594400 OsJ_15998 OSJNBa0009P12.34 OSNPB_040594400 ENOG411EK77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AhpC/TSA family Expressed protein (Os03g0729200 protein) (cDNA clone:J013007B16, full insert sequence),Expressed protein (Os03g0729200 protein) (cDNA clone:J013091E23, full insert sequence),Os03g0729200 protein (Fragment) Q851F6,Q10DH8,A0A0N7KHZ6 Q851F6_ORYSJ,Q10DH8_ORYSJ,A0A0N7KHZ6_ORYSJ LOC_Os03g51950 Os03g0729200 OsJ_12440 OSJNBb0011H13.6 OSNPB_030729200,Os03g0729200 LOC_Os03g51950 OSNPB_030729200,Os03g0729200 OSNPB_030729200 ENOG411EK79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like Os07g0498800 protein,Os07g0498800 protein (Fragment) A0A0P0X6D6,A0A0P0X6J3 A0A0P0X6D6_ORYSJ,A0A0P0X6J3_ORYSJ Os07g0498800 OSNPB_070498800 ENOG411E3M5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: cirrhosis autosomal recessive 1A (cirhin) NA NA NA NA NA NA NA ENOG411E3MY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411E3MW MQB2.9 Q9FM16 Q9FM16_ARATH At5g62770 (Membrane-associated kinase regulator, putative (DUF1645)) 29993 At5g62770 (Membrane-associated kinase regulator, putative (DUF1645)) kinase activity [GO:0016301] locus:2170743; AT5G62770 Protein of unknown function (DUF1645) Os05g0578100 protein Q6L5E9 Q6L5E9_ORYSJ Os05g0578100 Os05g0578100 OJ1126_B10.13 OSNPB_050578100 ENOG411E3MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411E3MN ERF021 Q9C9I2 ERF21_ARATH Ethylene-responsive transcription factor ERF021 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 20316 Ethylene-responsive transcription factor ERF021 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2825329; AT1G71450 Transcription factor NA NA NA NA NA NA NA ENOG411E3MM Q9LY27 Q9LY27_ARATH At5g07330 (NFU1 iron-sulfur cluster protein) (Uncharacterized protein At5g07330/T2I1_40) (Uncharacterized protein T2I1_40) 18368 At5g07330 (NFU1 iron-sulfur cluster protein) (Uncharacterized protein At5g07330/T2I1_40) (Uncharacterized protein T2I1_40) integral component of membrane [GO:0016021] locus:2183329; AT5G07330 NA Expressed protein (Os11g0533400 protein) (cDNA clone:001-119-B03, full insert sequence) Q2R376 Q2R376_ORYSJ Os11g0533400 LOC_Os11g32890 Os11g0533400 OSNPB_110533400 ENOG411E3MC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein Q2QPD1 Q2QPD1_ORYSJ LOC_Os12g34890 Os12g0534200 OSNPB_120534200 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E3MA Q6AWV7,Q6NME2,F4JFJ9 Q6AWV7_ARATH,Q6NME2_ARATH,F4JFJ9_ARATH At5g48335,At3g07580 (mRNA, clone: RAFL23-27-I04),Uncharacterized protein 12781,16109,14653 At5g48335,At3g07580 (mRNA, clone: RAFL23-27-I04),Uncharacterized protein locus:1006230540;,locus:2091092; AT5G48335,AT3G07580 NA Os02g0609400 protein (Putative iron-stress related protein) (cDNA clone:006-302-D01, full insert sequence) (cDNA clone:J013045I01, full insert sequence),Os02g0599500 protein Q6K1X0,A0A0P0VLE8 Q6K1X0_ORYSJ,A0A0P0VLE8_ORYSJ Os02g0609400 OSJNBa0030C08.45 OSNPB_020609400 P0496E03.18,Os02g0599500 OSNPB_020599500 ENOG411E5V4 F17A17.34 Q9SFB4 Q9SFB4_ARATH At3g08000 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) 15614 At3g08000 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein) RNA binding [GO:0003723] locus:2077427; AT3G08000 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E5V7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bet_v_1 NA NA NA NA NA NA NA ENOG411E6E8 Q9SSG6 Q9SSG6_ARATH At1g74860 (F25A4.17) 44651 At1g74860 (F25A4.17) locus:2037261; AT1G74860 NA NA NA NA NA NA NA NA ENOG411E6E7 RHA2A,RHA2B Q9ZT50,Q9ZU51,A0A1P8B063,A0A1P8B060 RHA2A_ARATH,RHA2B_ARATH,A0A1P8B063_ARATH,A0A1P8B060_ARATH E3 ubiquitin-protein ligase RHA2A (EC 2.3.2.27) (RING-H2 finger A2a) (RING-H2 zinc finger protein RHA2a) (RING-type E3 ubiquitin transferase RHA2A),E3 ubiquitin-protein ligase RHA2B (EC 2.3.2.27) (RING-H2 finger A2b) (RING-H2 zinc finger protein RHA2b) (RING-type E3 ubiquitin transferase RHA2B),RING-H2 finger protein 2B DISRUPTION PHENOTYPE: Decreased sensitivity to ABA and salt and osmotic stresses during seed germination and early seedling development. {ECO:0000269|PubMed:19286935}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:12062802}. Insensitive to ABA-C. Li-2009 FUNCTION: E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development (PubMed:19286935, PubMed:21478367). Acts additively with RHA2B in regulating ABA signaling and drought response (PubMed:21478367). Possesses E3 ubiquitin ligase activity in vitro (PubMed:15644464, PubMed:19286935). {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:19286935, ECO:0000269|PubMed:21478367}.,FUNCTION: E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development. Acts additively with RHA2A in regulating ABA signaling and drought response. Possesses E3 ubiquitin ligase activity in vitro. {ECO:0000269|PubMed:21478367}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 16983,16241,21903,19167 E3 ubiquitin-protein ligase RHA2A (EC 2.3.2.27) (RING-H2 finger A2a) (RING-H2 zinc finger protein RHA2a) (RING-type E3 ubiquitin transferase RHA2A),E3 ubiquitin-protein ligase RHA2B (EC 2.3.2.27) (RING-H2 finger A2b) (RING-H2 zinc finger protein RHA2b) (RING-type E3 ubiquitin transferase RHA2B),RING-H2 finger protein 2B cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; regulation of response to osmotic stress [GO:0047484]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; regulation of response to osmotic stress [GO:0047484]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Expressed in stems, flowers, cauline leaves, rosettes, siliques, seeds and roots. {ECO:0000269|PubMed:12646039, ECO:0000269|PubMed:19286935, ECO:0000269|PubMed:9781696}.,TISSUE SPECIFICITY: Expressed in vascular tissue, root tips, embryos and pistils. {ECO:0000269|PubMed:12062802}. locus:2037683;,locus:2038766; AT1G15100,AT2G01150 Ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411E6E4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E6E5 CASP-like protein 4A4 Q3EA54,A0A1P8B6E3 CSPLL_ARATH,A0A1P8B6E3_ARATH CASP-like protein 4A4 (AtCASPL4A4),CASP-like protein 22913,16768 CASP-like protein 4A4 (AtCASPL4A4),CASP-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:1006230404; AT4G11655 Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411E6E3 F26K9_240 Q9LZI4 Q9LZI4_ARATH At3g62810 (Complex 1 family protein / LVR family protein) (Uncharacterized protein At3g62810) (Uncharacterized protein F26K9_240) Downward-curled leaf margins.,In leaves TAS3 ta-siRNAs were below detectable levels whereas TAS1 and TAS2 ta-siRNAs were detectable. By contrast in flowers levels of TAS3 ta-siRNA remained unchanged whereas levels of TAS1 and TAS2 ta-siRNAs were reduced. 11823 At3g62810 (Complex 1 family protein / LVR family protein) (Uncharacterized protein At3g62810) (Uncharacterized protein F26K9_240) locus:2081640; AT3G62810 Inherit from euNOG: Complex 1 family protein Os05g0363600 protein (cDNA clone:002-145-E11, full insert sequence) Q688I0 Q688I0_ORYSJ Os05g0363600 OSNPB_050363600 P0686B10.4 ENOG411E6E1 CML29,CML28 Q9LF54,Q9SRP7 CML29_ARATH,CML28_ARATH Probable calcium-binding protein CML29 (Calmodulin-like protein 29),Probable calcium-binding protein CML28 (Calmodulin-like protein 28) FUNCTION: Potential calcium sensor. {ECO:0000250}. 9048,9160 Probable calcium-binding protein CML29 (Calmodulin-like protein 29),Probable calcium-binding protein CML28 (Calmodulin-like protein 28) cytoplasm [GO:0005737]; calcium ion binding [GO:0005509] locus:2157472;,locus:2099649; AT5G17480,AT3G03430 Polcalcin Os08g0560700 protein (Putative polcalcin Phl p 7 (Calcium-binding pollen allergen Phl p 7) (P7)),Os04g0686900 protein Q6YYX3,A0A0P0WGL3 Q6YYX3_ORYSJ,A0A0P0WGL3_ORYSJ Os08g0560700 Os08g0560700 OSNPB_080560700 P0562A06.43 P0604E01.20,Os04g0686900 OSNPB_040686900 ENOG411E6EN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 C2H2 transcription factor (C2H2 type zinc finger transcription factor ZFP37) (Os03g0820400 protein) (Putative Cys2/His2 zinc-finger protein) (Zinc finger protein ZFP15) (Zinc finger, C2H2 type family protein, expressed) (cDNA clone:002-157-B05, full insert sequence) Q84TB8 Q84TB8_ORYSJ OJ1754_E06.20 ZFP37 LOC_Os03g60570 Os03g0820400 OSNPB_030820400 ENOG411E6EM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6EJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0451300 protein),Expressed protein (Os12g0453500 protein) Q2QRT0,Q2QRR2 Q2QRT0_ORYSJ,Q2QRR2_ORYSJ Os12g0451300 LOC_Os12g26510 OSNPB_120451300,Os12g0453500 LOC_Os12g26690 Os12g0453500 OSNPB_120453500 ENOG411E6EK Q1G2Y5 Q1G2Y5_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Protease inhibitor) 20621 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Protease inhibitor) anchored component of membrane [GO:0031225]; peptidase activity [GO:0008233] locus:2201046; AT1G05450 AAI NA NA NA NA NA NA NA ENOG411E6EH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein Ribosomal protein Q7XZF9 Q7XZF9_ORYSJ Os03g0811800 LOC_Os03g59720 Os03g0811800 OsJ_13074 OSJNBb0033J23.14 OSNPB_030811800 ENOG411E6EI CSP4,CSP2 Q38896,Q41188 CSP4_ARATH,CSP2_ARATH Cold shock domain-containing protein 4 (AtCSP4) (Glycine-rich protein 2b) (AtGRP2b),Cold shock protein 2 (AtCSP2) (Cold shock domain-containing protein 2) (Glycine-rich protein 2) (AtGRP2) DISRUPTION PHENOTYPE: Early flowering, altered stamen number and impaired seed development. {ECO:0000269|PubMed:17123099, ECO:0000269|PubMed:17376161}. FUNCTION: Chaperone that binds to and unwinds RNA and both single-stranded DNA and double-stranded DNA (ssDNA and dsDNA DNA) (By similarity). Regulates the flowering transition and flower and seed development, particularly at late stages of embryo development, through regulation of gene expression (including MEA, FIS2, AP1, CAL, AG and SHP2). {ECO:0000250, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:21282328}.,FUNCTION: Chaperone that binds to RNA, single- (ssDNA) and double-stranded (dsDNA) DNA, and unwinds nucleic acid duplex. Accelerates seed germination and seedling growth under cold stress, and contributes to enhancement of cold and freezing tolerance. Regulates flowering transition, and flower and seed development. Promotes seed germination under salt stress. May regulate respiratory oxygen uptake. {ECO:0000269|PubMed:17123099, ECO:0000269|PubMed:17169986, ECO:0000269|PubMed:17376161, ECO:0000269|PubMed:17963727, ECO:0000269|PubMed:19258348, ECO:0000269|PubMed:19269998}. R-ATH-72163;R-ATH-72165; 19077,19153 Cold shock domain-containing protein 4 (AtCSP4) (Glycine-rich protein 2b) (AtGRP2b),Cold shock protein 2 (AtCSP2) (Cold shock domain-containing protein 2) (Glycine-rich protein 2) (AtGRP2) cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; embryo development ending in seed dormancy [GO:0009793]; fruit development [GO:0010154]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; double-stranded DNA binding [GO:0003690]; mRNA binding [GO:0003729]; nucleic acid binding [GO:0003676]; single-stranded DNA binding [GO:0003697]; zinc ion binding [GO:0008270]; cold acclimation [GO:0009631]; DNA duplex unwinding [GO:0032508]; regulation of cellular respiration [GO:0043457]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to desiccation [GO:0009269]; response to water deprivation [GO:0009414]; seed development [GO:0048316]; stamen development [GO:0048443]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Accumulates in floral buds, flowers, developing embryos during an early stage of silique development. {ECO:0000269|PubMed:19269998}.,DEVELOPMENTAL STAGE: Active in meristematic tissues. During vegetative growth, expressed in root and shoot apical regions, leaves and roots primordia, root vascular cylinder and procambium. In reproductive organs, present in developing floral meristem, meristematic tissues of young flower buds, and placentae, pollen, ovules and seeds, mostly in embryos. High expression in the earliest stage of silique development, with a decrease during the middle stages of silique development and subsequently an increase during the later stages. In mature seeds, mostly localized in hypocotyl and radicule. During seed germination, first observed in the tip of the radicule and, upon opening of the cotyledons, expressed in the radicule and hypocotyl/radicule transition zone. {ECO:0000269|PubMed:17123099, ECO:0000269|PubMed:17963727, ECO:0000269|PubMed:19269998}. TISSUE SPECIFICITY: Mostly expressed in shoot apices and siliques, and, to a lower extent, in roots, cotyledons, stems, shoots, leaves, floral buds and flowers. Present in shoot apical meristems and siliques (at protein level). Very low levels are observed in cv. Landsberg erecta compared to cv. Columbia (PubMed:19269998). {ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:21282328}.,TISSUE SPECIFICITY: Mostly expressed in shoot apices, seeds and siliques, and, to a lower extent, in roots, cotyledons, stems, shoots, leaves, floral buds and flowers. Present in shoot apical meristems and siliques (at protein level). {ECO:0000269|PubMed:17123099, ECO:0000269|PubMed:17963727, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:2152168}. locus:2047092;,locus:2121219; AT2G21060,AT4G38680 glycine-rich protein Cold shock domain protein 2 (Os08g0129200 protein) (Putative cold shock protein-1) (cDNA clone:J033050L02, full insert sequence),Os01g0323950 protein (Fragment),Os09g0269000 protein (Fragment) Q84UR8,A0A0P0V1S7,A0A0P0XKJ7 Q84UR8_ORYSJ,A0A0P0V1S7_ORYSJ,A0A0P0XKJ7_ORYSJ P0582D05.112 CSP2 Os08g0129200 OSNPB_080129200,Os01g0323950 OSNPB_010323950,Os09g0269000 OSNPB_090269000 ENOG411E6EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0457000 protein A3BTS9 A3BTS9_ORYSJ Os08g0457000 OsJ_27559 OSNPB_080457000 ENOG411E6EG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os03g0648600 protein A0A0P0W0Q7 A0A0P0W0Q7_ORYSJ Os03g0648600 OSNPB_030648600 ENOG411E6ED Q9LW04,A0A1I9LP16,A0A1I9LP17,F4HV08 Q9LW04_ARATH,A0A1I9LP16_ARATH,A0A1I9LP17_ARATH,F4HV08_ARATH Essential protein Yae1, N-terminal 22092,20700,16715,23032 Essential protein Yae1, N-terminal ribosomal large subunit biogenesis [GO:0042273]; translational initiation [GO:0006413] locus:2093262;,locus:2009333; AT3G15750,AT1G34570 Essential protein Yae1 N terminal Os01g0950800 protein (cDNA clone:001-134-B01, full insert sequence),Expressed protein (Os11g0210000 protein),Os10g0580500 protein (Fragment) Q5JKX3,Q0ITX1,A0A0P0XXU3 Q5JKX3_ORYSJ,Q0ITX1_ORYSJ,A0A0P0XXU3_ORYSJ Os01g0950800 Os01g0950800 B1147A04.32 OsJ_04769 OSNPB_010950800,Os11g0210000 LOC_Os11g10434 Os11g0210000 OSNPB_110210000,Os10g0580500 OSNPB_100580500 ENOG411E6EE Q9LQ83 Q9LQ83_ARATH T1N6.14 protein (Uncharacterized protein At1g01730) 24306 T1N6.14 protein (Uncharacterized protein At1g01730) locus:2198145; AT1G01730 NA NA NA NA NA NA NA NA ENOG411E6EB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6EC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411E6EA MCT1 Q1PFN8,Q4PT05 Q1PFN8_ARATH,Q4PT05_ARATH MEI2 C-terminal RRM only like 1 (RNA-binding protein),MEI2 C-terminal RRM only like 1 (Putative RNA-binding protein) 22953,26763 MEI2 C-terminal RRM only like 1 (RNA-binding protein),MEI2 C-terminal RRM only like 1 (Putative RNA-binding protein) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; negative regulation of seed germination [GO:0010187] locus:2029647; AT1G37140 RNA recognition motif 2 NA NA NA NA NA NA NA ENOG411E6EY Q8W492,Q9FGU7,A0A1P8BGD2,F4KHR6 Q8W492_ARATH,Q9FGU7_ARATH,A0A1P8BGD2_ARATH,F4KHR6_ARATH G patch domain protein (Uncharacterized protein K18B18.4),G patch domain protein 21951,25045,21244,34586 G patch domain protein (Uncharacterized protein K18B18.4),G patch domain protein locus:2153316; AT5G59050 NA NA NA NA NA NA NA NA ENOG411E6ET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Expressed protein (Os10g0205700 protein) (Putative hydroxyproline-rich glycoprotein) (Putative proline-rich protein) (cDNA clone:006-312-A05, full insert sequence) Q8RV00 Q8RV00_ORYSJ Os10g0205700 LOC_Os10g13850 Os10g0205700 OJ1004_F02.1 OSJNBb0048O22.1 OSNPB_100205700 ENOG411E6EU PKS3 Q8GXS8 PKS3_ARATH Protein PHYTOCHROME KINASE SUBSTRATE 3 FUNCTION: Probably involved in the phytochrome signaling pathway. {ECO:0000250}. 43288 Protein PHYTOCHROME KINASE SUBSTRATE 3 plasmodesma [GO:0009506]; red, far-red light phototransduction [GO:0009585] locus:2035010; AT1G18810 phytochrome kinase NA NA NA NA NA NA NA ENOG411E6ER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os02g0630200 protein A0A0P0VLY9 A0A0P0VLY9_ORYSJ Os02g0630200 OSNPB_020630200 ENOG411E6ES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os04g0300600 protein A0A0P0W8E2 A0A0P0W8E2_ORYSJ Os04g0300600 OSNPB_040300600 ENOG411ECNG MPK17 Q84M93 MPK17_ARATH Mitogen-activated protein kinase 17 (AtMPK17) (MAP kinase 17) (EC 2.7.11.24) 2.7.11.24 55493 Mitogen-activated protein kinase 17 (AtMPK17) (MAP kinase 17) (EC 2.7.11.24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777]; regulation of gene expression [GO:0010468] locus:2049552; AT2G01450 Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411ECNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN-like domain NA NA NA NA NA NA NA ENOG411ECNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc Os01g0744000 protein (Fragment) A0A0P0V848 A0A0P0V848_ORYSJ Os01g0744000 OSNPB_010744000 ENOG411ECNH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Nse4 NA NA NA NA NA NA NA ENOG411ECNM ASHH4 Q9M1X9,A0A1I9LNM3 ASHH4_ARATH,A0A1I9LNM3_ARATH Putative histone-lysine N-methyltransferase ASHH4 (EC 2.1.1.43) (ASH1 homolog 4) (Protein SET DOMAIN GROUP 24),Histone-lysine N-methyltransferase ASHH4 FUNCTION: Histone methyltransferase. {ECO:0000250}. R-ATH-3214841;R-ATH-5693565; 2.1.1.43 40123,32708 Putative histone-lysine N-methyltransferase ASHH4 (EC 2.1.1.43) (ASH1 homolog 4) (Protein SET DOMAIN GROUP 24),Histone-lysine N-methyltransferase ASHH4 chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024],nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024] locus:2080462; AT3G59960 PostSET NA NA NA NA NA NA NA ENOG411ECNR F4JDE3 F4JDE3_ARATH Cysteine/Histidine-rich C1 domain family protein 59484 Cysteine/Histidine-rich C1 domain family protein intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556] locus:2086814; AT3G13590 C1 domain NA NA NA NA NA NA NA ENOG411ECNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411ECNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0618300 protein C7IXA6 C7IXA6_ORYSJ Os01g0618300 Os01g0618300 OSNPB_010618300 ENOG411ECNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPT/TIG domain NA NA NA NA NA NA NA ENOG411DXRI PARP2 Q11207,A0A1P8B7C8,A0A1P8B7B5 PARP2_ARATH,A0A1P8B7C8_ARATH,A0A1P8B7B5_ARATH Poly [ADP-ribose] polymerase 2 (PARP-2) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 2) (ADPRT-2) (Poly[ADP-ribose] synthase 2),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) FUNCTION: Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250}. ARA:AT4G02390-MONOMER; 2.4.2.30 72176,72018,64200 Poly [ADP-ribose] polymerase 2 (PARP-2) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 2) (ADPRT-2) (Poly[ADP-ribose] synthase 2),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA ligase (ATP) activity [GO:0003910]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; DNA ligation involved in DNA repair [GO:0051103]; double-strand break repair via nonhomologous end joining [GO:0006303]; lagging strand elongation [GO:0006273]; protein ADP-ribosylation [GO:0006471],NAD+ ADP-ribosyltransferase activity [GO:0003950]; protein ADP-ribosylation [GO:0006471] locus:2005523; AT4G02390 poly ADP-ribose polymerase Poly [ADP-ribose] polymerase 2-B (PARP-2-B) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 2-B) (ADPRT-2-B) (Poly[ADP-ribose] synthase 2-B),Poly [ADP-ribose] polymerase 2-A (PARP-2-A) (EC 2.4.2.30) (NAD(+) ADP-ribosyltransferase 2-A) (ADPRT-2-A) (Poly[ADP-ribose] synthase 2-A),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30),Poly [ADP-ribose] polymerase (PARP) (EC 2.4.2.30) (Fragment) Q0JMY1,Q5Z8Q9,A0A0N7KCX5,A0A0P0V289 PRP2B_ORYSJ,PRP2A_ORYSJ,A0A0N7KCX5_ORYSJ,A0A0P0V289_ORYSJ PARP2-B Os01g0351100 LOC_Os01g24920 B1051E10.53 P0463A02.23,PARP2-A Os01g0351200 LOC_Os01g24940 B1051E10.55 P0463A02.25,Os01g0351200 OSNPB_010351200,Os01g0351100 OSNPB_010351100 FUNCTION: Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250}. ENOG411DXRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like Flavin-containing monooxygenase (EC 1.-.-.-) Q9LG41 Q9LG41_ORYSJ Os01g0224700 OSNPB_010224700 P0417G05.39 P0492F05.5 ENOG411DXRF Q8L6X7 Q8L6X7_ARATH At4g22290 (Ubiquitin-specific protease family C19-related protein) 47537 At4g22290 (Ubiquitin-specific protease family C19-related protein) integral component of membrane [GO:0016021]; peptidase activity [GO:0008233] locus:2132075; AT4G22290 NA NA NA NA NA NA NA NA ENOG411DXRG TOM2A Q9C5W7 TOM2A_ARATH Tobamovirus multiplication protein 2A (AtTOM2A) DISRUPTION PHENOTYPE: Reduced efficiency of intracellular multiplication of tobamoviruses (e.g. crucifer strain TMV-Cg), characterized by a reduced amplification of TMV-related RNAs. {ECO:0000269|PubMed:12514139, ECO:0000269|PubMed:18474569, ECO:0000269|PubMed:9568044}. FUNCTION: Necessary for the efficient intracellular multiplication of tobamoviruses, being a component of the replication complex. {ECO:0000269|PubMed:12514139, ECO:0000269|PubMed:18474569, ECO:0000269|PubMed:9568044}. 31556 Tobamovirus multiplication protein 2A (AtTOM2A) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; protein self-association [GO:0043621]; viral replication complex formation and maintenance [GO:0046786] TISSUE SPECIFICITY: Expressed in rosette leaves. {ECO:0000269|PubMed:18474569}. locus:2033718; AT1G32400 Tetraspanin family Os08g0282000 protein (Senescence-associated protein-like) (cDNA clone:J033037J09, full insert sequence) Q6YS19 Q6YS19_ORYSJ Os08g0282000 Os08g0282000 B1446H11.6 OSNPB_080282000 ENOG411DXRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os02g0187700 protein (Putative tuber-specific and sucrose-responsive element binding factor),Os07g0519450 protein (Fragment) Q6ZHS5,A0A0N7KNJ5 Q6ZHS5_ORYSJ,A0A0N7KNJ5_ORYSJ Os02g0187700 Os02g0187700 OJ1073_F05.29 OJ1145_F01.4 OSNPB_020187700,Os07g0519450 OSNPB_070519450 ENOG411DXRE Q1PEB2,F4JGI8 Q1PEB2_ARATH,F4JGI8_ARATH At4g06536 (SPla/RYanodine receptor (SPRY) domain-containing protein),Transmembrane protein 18762,44680 At4g06536 (SPla/RYanodine receptor (SPRY) domain-containing protein),Transmembrane protein integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:1005716402;,locus:1005716404; AT4G06536,AT4G06534 SPRY domain Os02g0614700 protein A0A0P0VLL7 A0A0P0VLL7_ORYSJ Os02g0614700 OSNPB_020614700 ENOG411DXRY UBP2,UBP1 Q8W4N3,Q9FPT5 UBP2_ARATH,UBP1_ARATH Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.4.19.12) (Deubiquitinating enzyme 2) (AtUBP2) (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2),Ubiquitin carboxyl-terminal hydrolase 1 (EC 3.4.19.12) (Deubiquitinating enzyme 1) (AtUBP1) (Ubiquitin thioesterase 1) (Ubiquitin-specific-processing protease 1) FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Is involved in resistance to the arginine analog canavanine (CAN). {ECO:0000269|PubMed:11115897}. ARA:AT1G04860-MONOMER;,ARA:AT2G32780-MONOMER; R-ATH-5696395; 3.4.19.12 105152,120771 Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.4.19.12) (Deubiquitinating enzyme 2) (AtUBP2) (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2),Ubiquitin carboxyl-terminal hydrolase 1 (EC 3.4.19.12) (Deubiquitinating enzyme 1) (AtUBP1) (Ubiquitin thioesterase 1) (Ubiquitin-specific-processing protease 1) chloroplast [GO:0009507]; proteasome complex [GO:0000502]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; zinc ion binding [GO:0008270]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; zinc ion binding [GO:0008270]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2010622;,locus:2046392; AT1G04860,AT2G32780 ubiquitin carboxyl-terminal hydrolase NA NA NA NA NA NA NA ENOG411DXRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os07g0598800 protein A0A0P0X865 A0A0P0X865_ORYSJ Os07g0598800 OSNPB_070598800 ENOG411DXRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os01g0530500 protein (Fragment) A0A0P0V3U6 A0A0P0V3U6_ORYSJ Os01g0530500 OSNPB_010530500 ENOG411DXRU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF642) NA NA NA NA NA NA NA ENOG411DXR9 AHA10 Q43128 PMA10_ARATH ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump 10) FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses. 3.6.3.6 104815 ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump 10) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [GO:0015662]; cation-transporting ATPase activity [GO:0019829]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; metal ion binding [GO:0046872]; ATP biosynthetic process [GO:0006754]; proanthocyanidin biosynthetic process [GO:0010023]; seed coat development [GO:0010214]; vacuolar acidification [GO:0007035]; vacuole organization [GO:0007033] TISSUE SPECIFICITY: Found primarily in developing seeds. locus:2020372; AT1G17260 ATPase 10 plasma Os03g0183900 protein (Fragment) A0A0P0VTU7 A0A0P0VTU7_ORYSJ Os03g0183900 OSNPB_030183900 ENOG411EEU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEU9 ENODL12 Q9M0A1 Q9M0A1_ARATH Early nodulin-like protein 12 (Uncharacterized protein AT4g30590) 19823 Early nodulin-like protein 12 (Uncharacterized protein AT4g30590) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2118691; AT4G30590 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EEU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0336000 protein Q6ERH5 Q6ERH5_ORYSJ Os09g0336000 OJ1253_E02.31 OsJ_28942 OSNPB_090336000 ENOG411EF4R F22O6_100 Q9SVD3 Q9SVD3_ARATH At3g52520 (Uncharacterized protein F22O6_100) 14450 At3g52520 (Uncharacterized protein F22O6_100) locus:2079949; AT3G52520 NA NA NA NA NA NA NA NA ENOG411EEUF Q1PDG7 Q1PDG7_ARATH Transmembrane protein 16328 Transmembrane protein integral component of membrane [GO:0016021] locus:2151631; AT5G61630 NA NA NA NA NA NA NA NA ENOG411EEUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411EEUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily NA NA NA NA NA NA NA ENOG411EEUV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Family with sequence similarity 108 member NA NA NA NA NA NA NA ENOG411EEUX Q9M9A1,Q9LII2 Q9M9A1_ARATH,Q9LII2_ARATH F27J15.22 (Oleosin family protein) (Putative oleosin) (Putative oleosin protein),Oleosin family protein (Putative oleosin) 18443,18135 F27J15.22 (Oleosin family protein) (Putative oleosin) (Putative oleosin protein),Oleosin family protein (Putative oleosin) integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915] locus:2028471;,locus:2086879; AT1G48990,AT3G18570 Oleosin NA NA NA NA NA NA NA ENOG411EEUZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DW0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol transfer protein Os03g0287100 protein A0A0P0VWB0 A0A0P0VWB0_ORYSJ Os03g0287100 OSNPB_030287100 ENOG411DW0V Q8GYS2 Q8GYS2_ARATH O-Glycosyl hydrolases family 17 protein (Uncharacterized protein At4g17180/dl4625w) ARA:AT4G17180-MONOMER; 51811 O-Glycosyl hydrolases family 17 protein (Uncharacterized protein At4g17180/dl4625w) anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2130639; AT4G17180 glucan endo-1-3-beta-glucosidase Os08g0326500 protein (Putative glycosyl hydrolase),Os09g0272300 protein (Putative elicitor inducible beta-1,3-glucanase) (cDNA clone:J033096C05, full insert sequence) Q7F1F4,Q6H4Z1 Q7F1F4_ORYSJ,Q6H4Z1_ORYSJ OJ1136_A10.111 Os08g0326500 OSNPB_080326500 P0703C03.46,Os09g0272300 OsJ_28623 OSNPB_090272300 P0515A04.20 ENOG411DW0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRO1-like domain ALG2-interacting protein X-like (Os02g0638400 protein) (cDNA clone:001-027-A12, full insert sequence),AP2 domain-containing transcription factor-like (Os02g0638650 protein) Q6H5V3,Q6H5V2 Q6H5V3_ORYSJ,Q6H5V2_ORYSJ Os02g0638400 OsJ_07664 OSJNBa0014E22.29 OSNPB_020638400 P0010C01.5,Os02g0638650 OSJNBa0014E22.30 OSNPB_020638650 P0010C01.6 ENOG411DW0T PTAC5 A1A6M1,A0A1P8B4I3 PTAC5_ARATH,A0A1P8B4I3_ARATH Protein disulfide isomerase pTAC5, chloroplastic (EC 5.3.4.1) (Plastid transcriptionally active chromosome proteins 5) (pTAC5),Plastid transcriptionally active 5 DISRUPTION PHENOTYPE: Ivory phenotype under heat stress. {ECO:0000269|PubMed:23922206}. FUNCTION: Exhibits zinc-dependent disulfide isomerase activity. Required for seedling and chloroplast development under heat stress, probably by maintaining plastid-encoded RNA polymerase (PEP)-dependent transcription. {ECO:0000269|PubMed:23922206}. 5.3.4.1 44020,39816 Protein disulfide isomerase pTAC5, chloroplastic (EC 5.3.4.1) (Plastid transcriptionally active chromosome proteins 5) (pTAC5),Plastid transcriptionally active 5 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast nucleoid [GO:0042644]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; heat shock protein binding [GO:0031072]; protein disulfide isomerase activity [GO:0003756]; unfolded protein binding [GO:0051082]; chloroplast organization [GO:0009658]; regulation of transcription, DNA-templated [GO:0006355]; response to heat [GO:0009408]; response to light stimulus [GO:0009416] locus:2119475; AT4G13670 Putative peptidoglycan binding domain OSJNBb0070J16.4 protein (Os04g0514400 protein) (cDNA clone:J023025J11, full insert sequence) Q7XSJ9 Q7XSJ9_ORYSJ Os04g0514400 Os04g0514400 OSJNBb0070J16.4 OSNPB_040514400 ENOG411DW0S Q9SYI5,A0A1P8B8B4 Q9SYI5_ARATH,A0A1P8B8B4_ARATH TolB protein-like protein (Uncharacterized protein At4g01870) (Uncharacterized protein T7B11.13),TolB protein-like protein 72815,78420 TolB protein-like protein (Uncharacterized protein At4g01870) (Uncharacterized protein T7B11.13),TolB protein-like protein proteolysis [GO:0006508] locus:2141405; AT4G01870 WD40-like Beta Propeller Repeat Os03g0840200 protein (Putative F8K7.10 protein) (WD40-like Beta Propeller Repeat family protein, expressed) (cDNA clone:J013116D11, full insert sequence) (cDNA clone:J023087F22, full insert sequence),Os07g0638100 protein,OSJNBa0009K15.21 protein (Os04g0278101 protein) Q6AVR6,Q8GVH2,Q7XLI9 Q6AVR6_ORYSJ,Q8GVH2_ORYSJ,Q7XLI9_ORYSJ LOC_Os03g62370 Os03g0840200 OSJNBa0075M12.6 OSNPB_030840200,OJ1340_C08.105 Os07g0638100 OSNPB_070638100,Os04g0278101 OsJ_14105 OSJNBa0009K15.21 OSNPB_040278101 ENOG411DW0R F4HQZ1 F4HQZ1_ARATH Regulator of chromosome condensation (RCC1) family protein 57842 Regulator of chromosome condensation (RCC1) family protein locus:2035423; AT1G19880 Regulator of chromosome condensation (RCC1) repeat Os04g0662800 protein Q0J9B4 Q0J9B4_ORYSJ Os04g0662800 Os04g0662800 OsJ_16512 OSNPB_040662800 ENOG411DW0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor Os06g0226700 protein (Putative auxin-induced basic helix-loop-helix transcription) (cDNA clone:002-105-B01, full insert sequence) Q67WL3 Q67WL3_ORYSJ Os06g0226700 OSNPB_060226700 P0425F05.5 P0690H04.29 ENOG411DW0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 Os08g0467600 protein (Putative storekeeper protein) Q6YSC2 Q6YSC2_ORYSJ Os08g0467600 OSNPB_080467600 P0104B02.44 P0470B03.15 ENOG411DW0Z Q8L4Q6 Q8L4Q6_ARATH Neurofilament light protein (Uncharacterized protein At5g25070) 82141 Neurofilament light protein (Uncharacterized protein At5g25070) cytosol [GO:0005829] locus:2179305; AT5G25070 NA NA NA NA NA NA NA NA ENOG411DW0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cyanidin-3-O-glucoside 2-O-glucuronosyltransferase-like Glycosyltransferase (EC 2.4.1.-) A0A0P0XAB3 A0A0P0XAB3_ORYSJ Os07g0672700 OSNPB_070672700 ENOG411DW0X KIN10,KIN11 Q38997,P92958 KIN10_ARATH,KIN11_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10 (AKIN10) (EC 2.7.11.1) (AKIN alpha-2) (AKINalpha2),SNF1-related protein kinase catalytic subunit alpha KIN11 (AKIN11) (EC 2.7.11.1) (AKIN alpha-1) (AKINalpha1) Reduced starch transport under phosphate starvation-P. Coello-2009 FUNCTION: Catalytic subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase. In vitro, KIN10 exhibits kinase activity on sucrose phosphate synthase and the kinase activity is inhibited by PRL1. May be a subunit of a SCF ubiquitin ligase complex and thus be involved in proteasomal ubiquitination. Phosphorylates GRIK1/SNAK2 and GRIK2/SNAK1 in vitro. {ECO:0000269|PubMed:10220464, ECO:0000269|PubMed:11387208, ECO:0000269|PubMed:20164192}.,FUNCTION: Catalytic subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase. In vitro, KIN11 exhibits kinase activity on sucrose phosphate synthase and the kinase activity is inhibited by PRL1. May be a subunit of a SCF ubiquitin ligase complex and thus be involved in proteasomal ubiquitination. Involved in innate antiviral defenses. {ECO:0000269|PubMed:10220464, ECO:0000269|PubMed:11387208}. R-ATH-163680;R-ATH-200425;R-ATH-380972; 2.7.11.1; 2.7.11.1 61182,58690 SNF1-related protein kinase catalytic subunit alpha KIN10 (AKIN10) (EC 2.7.11.1) (AKIN alpha-2) (AKINalpha2),SNF1-related protein kinase catalytic subunit alpha KIN11 (AKIN11) (EC 2.7.11.1) (AKIN alpha-1) (AKINalpha1) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; carbohydrate metabolic process [GO:0005975]; detection of nutrient [GO:0009594]; developmental process involved in reproduction [GO:0003006]; fatty acid biosynthetic process [GO:0006633]; intracellular signal transduction [GO:0035556]; leaf senescence [GO:0010150]; nitrate assimilation [GO:0042128]; primary root development [GO:0080022]; sugar mediated signaling pathway [GO:0010182]; vegetative phase change [GO:0010050],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; carbohydrate metabolic process [GO:0005975]; fatty acid biosynthetic process [GO:0006633]; intracellular signal transduction [GO:0035556]; nitrate assimilation [GO:0042128]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of defense response to virus [GO:0050688]; viral process [GO:0016032] TISSUE SPECIFICITY: Expressed in roots, shoots, flower buds, flowers, siliques and leaves. {ECO:0000269|PubMed:10417704}. locus:2102132;,locus:2094672; AT3G01090,AT3G29160 Snf1-related protein kinase Serine/threonine protein kinase OSK1 (OsK1) (EC 2.7.11.1) (SUCROSE NON-FERMENTING-1 related protein kinase 1A) (SNF1-related kinase 1A) (SnRK1A),Os05g0530500 protein (Fragment),Non-specific serine/threonine protein kinase (EC 2.7.11.1) (Fragment) Q852Q2,A0A0P0WPP6,A0A0P0WPR2 OSK1_ORYSJ,A0A0P0WPP6_ORYSJ,A0A0P0WPR2_ORYSJ OSK1 SNRK1A LOC_Os05g45420 Os05g0530500 OJ1131_E09.11 OSNPB_050530500,Os05g0530500 OSNPB_050530500 DISRUPTION PHENOTYPE: Reduced expression of MYBS1 and AAMY3 under glucose starvation. Accumulation of MYBS1 and AAMY3 in the presence of glucose. Retarded seed germination and seedling growth. {ECO:0000269|PubMed:17766403}. FUNCTION: Serine/threonine-protein kinase involved in sugar signaling during germination and seedling growth. Negative regulators of sugar response complex (SRC) in alpha-amylase gene promoters, thus relieving SRC sugar repression in a MYBS1-dependent manner. Required for MYBS1 and AAMY3 accumulation under glucose starvation. {ECO:0000269|PubMed:17766403}. ENOG411DW0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Di19 Protein DEHYDRATION-INDUCED 19 homolog 4 (OsDi19-4) Q6H6E6 DI194_ORYSJ DI19-4 Os02g0304900 LOC_Os02g20170 OsJ_006199 OsJ_06388 P0572A04.25 ENOG411DW0F AHL12,AHL5 Q8LPN5,Q8GXB3,A0A1P8AU89 AHL12_ARATH,AHL5_ARATH,A0A1P8AU89_ARATH AT-hook motif nuclear-localized protein 12,AT-hook motif nuclear-localized protein 5,AT hook motif DNA-binding family protein FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 38312,39644,37652 AT-hook motif nuclear-localized protein 12,AT-hook motif nuclear-localized protein 5,AT hook motif DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein self-association [GO:0043621]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2031306;,locus:2031321; AT1G63480,AT1G63470 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411DW0E Q9C8D7 Q9C8D7_ARATH At1g66080 (Hikeshi-like protein) (Uncharacterized protein At1g66080) (Uncharacterized protein F15E12.12) 21097 At1g66080 (Hikeshi-like protein) (Uncharacterized protein At1g66080) (Uncharacterized protein F15E12.12) cytosol [GO:0005829] locus:2013855; AT1G66080 Protein of unknown function (DUF775) Expressed protein (Os03g0237500 protein),Os03g0237500 protein Q10PE1,Q0DTM9 Q10PE1_ORYSJ,Q0DTM9_ORYSJ Os03g0237500 LOC_Os03g13450 OSNPB_030237500,Os03g0237500 OSNPB_030237500 ENOG411DW0D PCMP-E22 Q1PFA6 PP144_ARATH Pentatricopeptide repeat-containing protein At2g02750 67936 Pentatricopeptide repeat-containing protein At2g02750 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2058812; AT2G02750 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DW0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) (Fragment) Q7XHB3,A0A0P0XR31 Q7XHB3_ORYSJ,A0A0P0XR31_ORYSJ prx125 OSJNBa0015O22.19 LOC_Os10g02040 Os10g0109300 OSNPB_100109300,Os10g0109300 OSNPB_100109300 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DW0B MOM1,MOM Q9M658,A0A1P8ASM1 MOM1_ARATH,A0A1P8ASM1_ARATH Helicase protein MOM1 (EC 3.6.4.-) (Protein MAINTENANCE OF METHYLATION) (Protein MORPHEUS MOLECULE 1),ATP-dependent helicase family protein DISRUPTION PHENOTYPE: Reactivated transcription of heavily methylated silent loci, independently of chromatin demethylation. Releases TSI, 5S ribosomal RNA genes as well as 180-bp and 106B repeats of chromocenters silencing independently of chromatin properties. Partial derepression of 35S promoter homology-dependent TGS in transgenic plants. Abnormal aberrant mRNA transcriptional read-through. Increased expression of minor 5S rRNA species. No nuclear organization alteration. {ECO:0000269|PubMed:10821279, ECO:0000269|PubMed:10899982, ECO:0000269|PubMed:12370435, ECO:0000269|PubMed:12609046, ECO:0000269|PubMed:17082818, ECO:0000269|PubMed:17082821, ECO:0000269|PubMed:18725928, ECO:0000269|PubMed:19910926, ECO:0000269|PubMed:20404545, ECO:0000269|PubMed:20826701, ECO:0000269|PubMed:21070421}. Decreased DNA methylation-J. Paszkowski-2000 FUNCTION: Required for the heritable maintenance of transcriptional gene silencing (TGS) in heterochromatin, and particularly in the intermediate bivalent heterochromatin, characterized by an unsual methylation pattern consisting in hypermethylated DNA and histone H3 'Lys-4' methylation (H3K4me) together with depletion of histone H3 'Lys-9' methylation (H3K9me), in a chromatin methylation-independent manner, in a non-CG methylation context. May play a role in the RNA polymerase IV/V (Pol-IV/V)-mediated RNA-directed DNA methylation (RdDM) leading to TGS (also called siRNA-mediated TGS pathway), probably by modulating small interfering RNA (siRNA) accumulation. Especially involved in the gene silencing of the transcriptionally silent information region (TSI), 5S ribosomal RNA genes (localized in the pericentromeric heterochromatin of chromosomes 3, 4, and 5) and of 180-bp satellite repeats and 106B long terminal repeat (LTR)-like repeats of the chromocenters. Prevents the aberrant mRNA transcriptional read-through. {ECO:0000269|PubMed:10821279, ECO:0000269|PubMed:10899982, ECO:0000269|PubMed:12370435, ECO:0000269|PubMed:12609046, ECO:0000269|PubMed:17082818, ECO:0000269|PubMed:17082821, ECO:0000269|PubMed:18725928, ECO:0000269|PubMed:19910926, ECO:0000269|PubMed:20404545, ECO:0000269|PubMed:20826701, ECO:0000269|PubMed:21070421}. MISCELLANEOUS: Requires for the complete maintenance of the 35S promoter homology-dependent TGS induced by T-DNA construct insertion. 3.6.4.- 218569,218698 Helicase protein MOM1 (EC 3.6.4.-) (Protein MAINTENANCE OF METHYLATION) (Protein MORPHEUS MOLECULE 1),ATP-dependent helicase family protein nucleus [GO:0005634]; 2 iron, 2 sulfur cluster binding [GO:0051537]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; chromatin silencing [GO:0006342]; gene silencing by RNA [GO:0031047]; maintenance of chromatin silencing [GO:0006344]; transcription, DNA-templated [GO:0006351],helicase activity [GO:0004386] locus:2205205; AT1G08060 domain containing protein expressed Os06g0102900 protein,Os02g0110700 protein (Fragment),Os06g0102800 protein (Fragment) Q5VRH6,A0A0P0VDU6,A0A0P0WRQ5,A0A0P0VDW1 Q5VRH6_ORYSJ,A0A0P0VDU6_ORYSJ,A0A0P0WRQ5_ORYSJ,A0A0P0VDW1_ORYSJ Os06g0102900 Os06g0102900 OSJNBa0075G19.21-1 OSNPB_060102900,Os02g0110700 OSNPB_020110700,Os06g0102800 OSNPB_060102800 ENOG411DW0A NMT2,NMT1,NMT3 Q944H0,Q9FR44,Q9C6B9 PEAM2_ARATH,PEAM1_ARATH,PEAM3_ARATH Phosphomethylethanolamine N-methyltransferase (AtPMEAMT) (EC 2.1.1.-) (Phosphoethanolamine N-methyltransferase 2),Phosphoethanolamine N-methyltransferase 1 (AtNMT1) (PEAMT 1) (EC 2.1.1.103) (Protein XIPOTL 1),Phosphoethanolamine N-methyltransferase 3 (EC 2.1.1.103) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20650897}.,DISRUPTION PHENOTYPE: Altered root development due to defect in primary root elongation and root epidermal cell development. {ECO:0000269|PubMed:15295103}. No obvious phenotypic difference in growth or development with respect to wild type. More abundant 34:3-PtdMEA (phosphatidylmethylethanolamine) than wt. Abnormal phosphatidylmethylethanolamine levels; No other phenotypes detected-E. Weretilnyk-2010 FUNCTION: Catalyzes N-methylation of phosphomonomethylethanolamine and phosphodimethylethanolamine, the two methylation steps required to convert phosphomonoethanolamine to phosphocholine. Unlike NMT1, NMT2 cannot utilize phosphoethanolamine as substrate in vitro. {ECO:0000269|PubMed:20650897}.,FUNCTION: Catalyzes N-methylation of phosphoethanolamine, phosphomonomethylethanolamine and phosphodimethylethanolamine, the three methylation steps required to convert phosphoethanolamine to phosphocholine. Required for root system development and epidermal cell integrity through its role in choline and phospholipid metabolism. {ECO:0000269|PubMed:15295103}.,FUNCTION: Catalyzes N-methylation of phosphoethanolamine, phosphomonomethylethanolamine and phosphodimethylethanolamine, the three methylation steps required to convert phosphoethanolamine to phosphocholine. {ECO:0000250}. PATHWAY: Phospholipid metabolism; phosphatidylcholine biosynthesis.,PATHWAY: Phospholipid metabolism; phosphatidylcholine biosynthesis; phosphocholine from phosphoethanolamine: step 1/1. ARA:AT1G48600-MONOMER;,ARA:AT3G18000-MONOMER;,ARA:AT1G73600-MONOMER; 2.1.1.103; 2.1.1.-,2.1.1.103 56045,56103,56368 Phosphomethylethanolamine N-methyltransferase (AtPMEAMT) (EC 2.1.1.-) (Phosphoethanolamine N-methyltransferase 2),Phosphoethanolamine N-methyltransferase 1 (AtNMT1) (PEAMT 1) (EC 2.1.1.103) (Protein XIPOTL 1),Phosphoethanolamine N-methyltransferase 3 (EC 2.1.1.103) cytoplasm [GO:0005737]; phosphoethanolamine N-methyltransferase activity [GO:0000234]; phosphomethylethanolamine N-methyltransferase activity [GO:0052667]; phosphatidylcholine biosynthetic process [GO:0006656],cytoplasm [GO:0005737]; cytosol [GO:0005829]; methyltransferase activity [GO:0008168]; phosphoethanolamine N-methyltransferase activity [GO:0000234]; choline biosynthetic process [GO:0042425]; phosphatidylcholine biosynthetic process [GO:0006656]; pollen development [GO:0009555]; pollen tube growth [GO:0009860]; pollen tube guidance [GO:0010183]; post-embryonic root development [GO:0048528]; unidimensional cell growth [GO:0009826],cytoplasm [GO:0005737]; phosphoethanolamine N-methyltransferase activity [GO:0000234]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259]; phosphatidylcholine biosynthetic process [GO:0006656] locus:2198035;,locus:2088535;,locus:2027779; AT1G48600,AT3G18000,AT1G73600 phosphoethanolamine N-methyltransferase Os05g0548900 protein (cDNA, clone: J100040M09, full insert sequence) B7FA34 B7FA34_ORYSJ Os05g0548900 OsJ_19441 OSNPB_050548900 ENOG411DW0J TAF8 Q9SYZ9,A0A1P8B5T7 TAF8_ARATH,A0A1P8B5T7_ARATH Transcription initiation factor TFIID subunit 8 (TBP-associated factor 8) (AtTAF8),TBP-associated factor 8 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. 39546,10583 Transcription initiation factor TFIID subunit 8 (TBP-associated factor 8) (AtTAF8),TBP-associated factor 8 nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2116149; AT4G34340 Transcription factor TFIID complex subunit 8 C-term Bromodomain associated family protein, expressed (Os12g0574800 protein) (cDNA clone:J023149C18, full insert sequence) (cDNA clone:J033070O18, full insert sequence) (cDNA clone:J033094E07, full insert sequence) Q2QN90 Q2QN90_ORYSJ Os12g0574800 LOC_Os12g38620 OsJ_36612 OSNPB_120574800 ENOG411DW0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA branched-chain-amino-acid aminotransferase Branched-chain-amino-acid aminotransferase (EC 2.6.1.42),Os04g0559400 protein (Fragment) Q7XPR5,A0A0P0WDE3 Q7XPR5_ORYSJ,A0A0P0WDE3_ORYSJ Os04g0559400 OSJNBa0065O17.16 OSJNBa0084K11.1 OSNPB_040559400,Os04g0559400 OSNPB_040559400 ENOG411DW06 HLS1 Q42381,O64815,A0A1P8B3D5,F4ILF1 HLS1_ARATH,HLS1L_ARATH,A0A1P8B3D5_ARATH,F4ILF1_ARATH Probable N-acetyltransferase HLS1 (EC 2.3.1.-) (Protein CONSTITUTIVE PHOTOMORPHOGENIC 3) (Protein HOOKLESS 1) (Protein UNUSUAL SUGAR RESPONSE 2),Probable N-acetyltransferase HLS1-like (EC 2.3.1.-),Acyl-CoA N-acyltransferases (NAT) superfamily protein DISRUPTION PHENOTYPE: Unable to develop apical hook in the dark. Reduced length of dark-grown hypocotyls and reduced leaf initiation rate in light-grown seedlings. {ECO:0000269|PubMed:10409511, ECO:0000269|PubMed:18838801, ECO:0000269|PubMed:8612271}. hookless in absence of ethylene reduced ethylene production; small narrow rosette leaves; bolts and senesces early. Complete loss of apical hook-J. Ecker-1996 FUNCTION: Ethylene-responsive N-acetyltransferase required for differential cell elongation in the hypocotyl. Regulates apical hook formation of dark-grown seedlings. May control differential cell growth by regulating auxin activity. May be involved in negative feedback regulation of auxin homeostasis through the control of GH3-like genes. Modulates de novo shoot organogenesis. {ECO:0000269|PubMed:17071622, ECO:0000269|PubMed:22349459}. 2.3.1.- 44934,46111,38516,31179 Probable N-acetyltransferase HLS1 (EC 2.3.1.-) (Protein CONSTITUTIVE PHOTOMORPHOGENIC 3) (Protein HOOKLESS 1) (Protein UNUSUAL SUGAR RESPONSE 2),Probable N-acetyltransferase HLS1-like (EC 2.3.1.-),Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity [GO:0008080]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; auxin-activated signaling pathway [GO:0009734]; photomorphogenesis [GO:0009640]; protein acetylation [GO:0006473]; regulation of growth [GO:0040008]; response to ethylene [GO:0009723]; unidimensional cell growth [GO:0009826],N-acetyltransferase activity [GO:0008080]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; protein acetylation [GO:0006473],N-acetyltransferase activity [GO:0008080],transferase activity, transferring acyl groups [GO:0016746] locus:2005512;,locus:2045329; AT4G37580,AT2G23060 Acetyltransferase (GNAT) family Acetyltransferase-like protein (Os07g0116600 protein),Os03g0764000 protein Q7EYF5,A0A0P0W427 Q7EYF5_ORYSJ,A0A0P0W427_ORYSJ OJ1138_B05.130 OJ1119_A04.104 Os07g0116600 OSNPB_070116600,Os03g0764000 OSNPB_030764000 ENOG411DW04 Q93ZM7 CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial (HSP60-like 2) FUNCTION: Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix (By similarity). {ECO:0000250}. Legionellosis (05134),RNA degradation (03018),Type I diabetes mellitus (04940),Tuberculosis (05152) 60466 Chaperonin CPN60-like 2, mitochondrial (HSP60-like 2) cytosol [GO:0005829]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; protein binding involved in protein folding [GO:0044183]; unfolded protein binding [GO:0051082]; 'de novo' protein folding [GO:0006458]; chaperone-mediated protein folding [GO:0061077]; protein import into mitochondrial intermembrane space [GO:0045041]; protein refolding [GO:0042026]; response to cadmium ion [GO:0046686] locus:2087959; AT3G13860 chaperonin CPN60-like 2 Os05g0540300 protein (Putative chaperonin) Q5TKQ5 Q5TKQ5_ORYSJ Os05g0540300 OJ1362_G11.3 OsJ_19383 OSNPB_050540300 ENOG411DW03 Q682Q6 Q682Q6_ARATH TLDc domain protein (Uncharacterized protein At1g32520) 26287 TLDc domain protein (Uncharacterized protein At1g32520) chloroplast [GO:0009507] locus:2033755; AT1G32520 TLD Expressed protein (Os11g0220300 protein) (cDNA clone:J013164O07, full insert sequence),Os07g0120051 protein (Fragment),Os06g0318400 protein (Fragment) Q2R8Q9,A0A0N7KMV1,A0A0P0WW85 Q2R8Q9_ORYSJ,A0A0N7KMV1_ORYSJ,A0A0P0WW85_ORYSJ Os11g0220300 LOC_Os11g11330 Os11g0220300 OSNPB_110220300,Os07g0120051 OSNPB_070120051,Os06g0318400 OSNPB_060318400 ENOG411DW02 SE Q9ZVD0 SRRT_ARATH Serrate RNA effector molecule DISRUPTION PHENOTYPE: Death during embryogenesis. Weaker mutants (se-1, se-2 and se-3) also exist. Mutant se-1 displays defects in shoot and leaf development. Mutants se-2 and se-3 show adaxial leaf curling, loss of asymmetric differentiation of abaxial and adaxial cell types and development of trumpet-shaped or radial leaves. Vascular polarity of se-3 leaves is also perturbed, with xylem elements forming both adaxially and abaxially in the vascular bundle. {ECO:0000269|PubMed:11402159, ECO:0000269|PubMed:16977334}. Hypertrophic meristem upwardly curled leaves decreased accumulation of microRNAs.Phenotype provided by Stephen Grigg,Hypertrophic meristem defective patterning of leaves upwardly curled leaves increased adaxial character due to increased HD-Zip III gene expression decreased accumulation of microRNAs. Phenotype provided by Stephen Grigg Serrated leaves; Abnormal vegetative phase change; Increased leaf venation complexity-R. Meeks-Wagner-2001 FUNCTION: Acts as a mediator between the cap-binding complex (CBC) and both the pre-mRNA splicing and primary microRNAs (miRNAs) processing machinery. Required for proper processing of primary miRNAs to miRNAs, thereby playing a role in RNA-mediated gene silencing (RNAi) by miRNAs. Does not participate in sense post-transcriptional gene silencing. Acts as a regulator of meristem activity and adaxial leaf fate via the miRNA gene-silencing pathway by regulating the expression of PHB and by limiting the competence of shoot tissue to respond to KNOX expression. Its function is however not limited to miRNA-mediated repression of leaf polarity genes, but rather acts as a general regulator of primary microRNAs processing. Also critical for the accumulation of the trans-acting small interfering RNA (ta-siRNA). Required for pre-mRNA splicing. {ECO:0000269|PubMed:16222298, ECO:0000269|PubMed:16889646, ECO:0000269|PubMed:16977334, ECO:0000269|PubMed:18550839, ECO:0000269|PubMed:18632569}. 81098 Serrate RNA effector molecule chloroplast [GO:0009507]; cytosol [GO:0005829]; nuclear cap binding complex [GO:0005846]; nuclear dicing body [GO:0010445]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; mRNA processing [GO:0006397]; primary miRNA processing [GO:0031053]; production of ta-siRNAs involved in RNA interference [GO:0010267]; regulation of adaxial/abaxial pattern formation [GO:2000011]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of meristem development [GO:0048509]; regulation of transcription, DNA-templated [GO:0006355]; RNA splicing [GO:0008380]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Expressed in shoot meristems and in emerging organ primordia throughout development. {ECO:0000269|PubMed:11402159}. locus:2059294; AT2G27100 Serrate RNA effector Os06g0698859 protein (Putative C2H2 zinc-finger protein) Q5Z4U6 Q5Z4U6_ORYSJ Os06g0698859 Os06g0698859 OSNPB_060698859 P0545E05.35 ENOG411DW01 F4JY76 F4JY76_ARATH Eukaryotic translation initiation factor 3 subunit L (eIF3l) FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03011}. R-ATH-156827;R-ATH-72689;R-ATH-72695;R-ATH-72702; 60183 Eukaryotic translation initiation factor 3 subunit L (eIF3l) cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446] locus:504955153;locus:504956415; AT5G25754AT5G25757; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex which is involved in protein synthesis and together with other initiation factors stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) Os01g0229100 protein (Putative eukaryotic translation initiation factor 3 subunit 6 interacting protein),Eukaryotic translation initiation factor 3 subunit L (eIF3l),Os05g0227700 protein (Fragment) Q5N7Y6,Q0DJU1,Q5N7Y7,A0A0P0WJQ6 Q5N7Y6_ORYSJ,Q0DJU1_ORYSJ,Q5N7Y7_ORYSJ,A0A0P0WJQ6_ORYSJ P0452F10.30-2 Os01g0229100 P0485D09.6-2 OSNPB_010229100,Os05g0227700 Os05g0227700 OsJ_17615 OSNPB_050227700,P0452F10.30-1 P0485D09.6-1 Os01g0229100 OsJ_00976 OSNPB_010229100,Os05g0227700 OSNPB_050227700 FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000256|HAMAP-Rule:MF_03011}. ENOG411DW00 FACE1,ATSTE24 Q8RX88,A0A1P8B870 FACE1_ARATH,A0A1P8B870_ARATH CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Farnesylated proteins-converting enzyme 1) (AtFACE-1) (FACE-1) (Prenyl protein-specific endoprotease 1) (Zinc metalloproteinase Ste24 homolog) (AtSTE24),Peptidase family M48 family protein FUNCTION: Proteolytically removes the C-terminal three residues of farnesylated proteins. The substrate specificity is only partially overlapping with that of FACE2. {ECO:0000269|PubMed:12039957}. 3.4.24.84; 3.4.24.84 48482,47158 CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Farnesylated proteins-converting enzyme 1) (AtFACE-1) (FACE-1) (Prenyl protein-specific endoprotease 1) (Zinc metalloproteinase Ste24 homolog) (AtSTE24),Peptidase family M48 family protein endoplasmic reticulum [GO:0005783]; integral component of endoplasmic reticulum membrane [GO:0030176]; vacuole [GO:0005773]; endopeptidase activity [GO:0004175]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; CAAX-box protein maturation [GO:0080120]; CAAX-box protein processing [GO:0071586]; proteolysis [GO:0006508],integral component of membrane [GO:0016021]; metalloendopeptidase activity [GO:0004222]; CAAX-box protein processing [GO:0071586] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:12039957}. locus:2124983; AT4G01320 CAAX prenyl protease 1 CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Farnesylated proteins-converting enzyme 1) (FACE-1) (Prenyl protein-specific endoprotease 1) (Zinc metalloproteinase Ste24 homolog),Os02g0680400 protein (Fragment) Q6EPN8,A0A0P0VN79 FACE1_ORYSJ,A0A0P0VN79_ORYSJ FACE1 STE24 Os02g0680400 LOC_Os02g45650 OsJ_007668 OsJ_07930 P0663F07.25,Os02g0680400 OSNPB_020680400 FUNCTION: Proteolytically removes the C-terminal three residues of farnesylated proteins. {ECO:0000250}. ENOG411EE07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root cap NA NA NA NA NA NA NA ENOG411EFV0 T11I11.20 Q9SW56 Q9SW56_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34780) (Uncharacterized protein T11I11.20) 12594 SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g34780) (Uncharacterized protein T11I11.20) response to auxin [GO:0009733] locus:2116865; AT4G34780 Auxin responsive protein NA NA NA NA NA NA NA ENOG411EFVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial regulatory helix-turn-helix protein lysR family NA NA NA NA NA NA NA ENOG411EFVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EFVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0443100 protein A0A0P0XN74 A0A0P0XN74_ORYSJ Os09g0443100 OSNPB_090443100 ENOG411EFVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH dehydrogenase NA NA NA NA NA NA NA ENOG411EHSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0431800 protein (Os08g0432000 protein) Q6ZKT0 Q6ZKT0_ORYSJ Os08g0431800 Os08g0432000 OJ1111_B08.19 OsJ_27413 OSNPB_080431800 ENOG411EHSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHST Q1G3Z0 Q1G3Z0_ARATH Uncharacterized protein 8905 Uncharacterized protein locus:4010713546; AT1G53635 NA NA NA NA NA NA NA NA ENOG411DQVR F4I2E5 F4I2E5_ARATH NAD(P)-binding Rossmann-fold superfamily protein 36461 NAD(P)-binding Rossmann-fold superfamily protein catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2011741; AT1G76470 Polysaccharide biosynthesis protein Os09g0491820 protein C7J743,A0A0N7KR15 C7J743_ORYSJ,A0A0N7KR15_ORYSJ Os09g0491820 OSNPB_090491820 ENOG411ED17 T20K12.110 Q9M2E3 Q9M2E3_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g61210/T20K12_110) (Uncharacterized protein T20K12.110) 29567 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g61210/T20K12_110) (Uncharacterized protein T20K12.110) cytoplasm [GO:0005737]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2098841; AT3G61210 Methyltransferase domain NA NA NA NA NA NA NA ENOG411EJK2 Q9LJF8,A0A1I9LNW1,A0A1I9LNW2 FBL47_ARATH,A0A1I9LNW1_ARATH,A0A1I9LNW2_ARATH F-box/LRR-repeat protein At3g26922,F-box/RNI-like superfamily protein 34623,31372,31648 F-box/LRR-repeat protein At3g26922,F-box/RNI-like superfamily protein locus:5019474764; AT3G26922 FBOX NA NA NA NA NA NA NA ENOG411EJKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase subunit C NA NA NA NA NA NA NA ENOG411EJKE Q9FIT3 FB297_ARATH Putative F-box protein At5g62060 35541 Putative F-box protein At5g62060 locus:2174078; AT5G62060 F-box associated domain NA NA NA NA NA NA NA ENOG411EIVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411ED1X PP2B3,PP2B4,PP2B5,PP2B6 Q570N1,Q9ZVR3,Q9ZVR1,Q9ZVR0 PP2B3_ARATH,PP2B4_ARATH,PP2B5_ARATH,PP2B6_ARATH F-box protein PP2-B3 (Protein PHLOEM PROTEIN 2-LIKE B3) (AtPP2-B3),Putative protein PHLOEM PROTEIN 2-LIKE B4 (AtPP2-B4),F-box protein PP2-B5 (Protein PHLOEM PROTEIN 2-LIKE B5) (AtPP2-B5),Putative F-box protein PP2-B6 (Protein PHLOEM PROTEIN 2-LIKE B6) (AtPP2-B6) 13627,16551,32015,34480 F-box protein PP2-B3 (Protein PHLOEM PROTEIN 2-LIKE B3) (AtPP2-B3),Putative protein PHLOEM PROTEIN 2-LIKE B4 (AtPP2-B4),F-box protein PP2-B5 (Protein PHLOEM PROTEIN 2-LIKE B5) (AtPP2-B5),Putative F-box protein PP2-B6 (Protein PHLOEM PROTEIN 2-LIKE B6) (AtPP2-B6) carbohydrate binding [GO:0030246] locus:2056241;,locus:2056271;,locus:2056166; AT2G02270,AT2G02280,AT2G02300,AT2G02310 FBOX NA NA NA NA NA NA NA ENOG411DVQY TOPP6,TOPP3 P48486,P48483 PP16_ARATH,PP13_ARATH Serine/threonine-protein phosphatase PP1 isozyme 6 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) FUNCTION: Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro. {ECO:0000269|PubMed:21222654}. 3.1.3.16 36567,36215 Serine/threonine-protein phosphatase PP1 isozyme 6 (EC 3.1.3.16),Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; protein phosphatase type 1 complex [GO:0000164]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; protein dephosphorylation [GO:0006470] TISSUE SPECIFICITY: Strongly up-regulated within developing flowers, especially in the tapetum, the developing and mature pollen and in the ovaries. locus:2128258;,locus:2024507; AT4G11240,AT1G64040 serine threonine-protein phosphatase Serine/threonine-protein phosphatase (EC 3.1.3.16) Q5VRS7 Q5VRS7_ORYSJ Os06g0164100 OSJNBa0015I14.10 OSNPB_060164100 ENOG411DVQX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA class III peroxidase Peroxidase (EC 1.11.1.7),Os06g0521900 protein,Os06g0522100 protein Q5Z9B3,Q5Z9B2,Q654F1,A0A0P0WX52,A0A0P0WXK0,A0A0P0WX92 Q5Z9B3_ORYSJ,Q5Z9B2_ORYSJ,Q654F1_ORYSJ,A0A0P0WX52_ORYSJ,A0A0P0WXK0_ORYSJ,A0A0P0WX92_ORYSJ prx84 Os06g0521400 OSNPB_060521400 P0485D10.6,prx83 Os06g0521500 OsJ_21516 OSNPB_060521500 P0485D10.7,prx81 Os06g0522300 OsJ_21520 OSJNBa0009J19.8 OSNPB_060522300 P0485D10.27,Os06g0521900 OSNPB_060521900,Os06g0522100 OSNPB_060522100,Os06g0521200 OSNPB_060521200 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DVQU TENA_E Q9ASY9 TENAE_ARATH Bifunctional TENA-E protein (EC 3.5.1.-) (EC 3.5.99.2) (Aminopyrimidine aminohydrolase) (Formylaminopyrimidine amidohydrolase) (Formylaminopyrimidine deformylase) (Seed maturation protein PM36 homolog) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:25014715}. FUNCTION: Involved in thiamine salvage by hydrolyzing the thiamine breakdown product 4-amino-5-aminomethyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) (PubMed:25014715). Has a high formylamino-HMP amidohydrolase activity (PubMed:25014715). No activity with other thiamine degradation products such as thiamine mono- or diphosphate, oxothiamine, oxythiamine, thiamine disulfide, desthiothiamine or thiochrome as substrates (PubMed:25014715). Does not display thiaminase II activity, as it is unable to hydrolyze thiamine (PubMed:25014715). Is able to carry out two successive steps in the salvage of thiamine breakdown product, whereas two separate enzymes are required in Bacillus species (Probable). May also serve a damage pre-emption function by hydrolyzing products that would otherwise do harm (Probable). {ECO:0000269|PubMed:25014715, ECO:0000305|PubMed:25014715}. PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis. {ECO:0000305}. 3.5.1.-; 3.5.99.2 25070 Bifunctional TENA-E protein (EC 3.5.1.-) (EC 3.5.99.2) (Aminopyrimidine aminohydrolase) (Formylaminopyrimidine amidohydrolase) (Formylaminopyrimidine deformylase) (Seed maturation protein PM36 homolog) cytosol [GO:0005829]; thiaminase activity [GO:0050334]; thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229] DEVELOPMENTAL STAGE: Expression increases during seed development. {ECO:0000269|PubMed:25014715}. TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:25014715}. locus:2086052; AT3G16990 seed maturation protein Os03g0306900 protein (Seed maturation protein PM36, putative, expressed) (cDNA clone:J033050J24, full insert sequence),Os03g0306900 protein (Fragment) Q10MJ3,A0A0P0VWJ6 Q10MJ3_ORYSJ,A0A0P0VWJ6_ORYSJ LOC_Os03g19390 Os03g0306900 OsJ_10561 OSNPB_030306900,Os03g0306900 OSNPB_030306900 ENOG411DVQV FUT12,FUT11 Q9FX97,Q9LJK1 FUT12_ARATH,FUT11_ARATH Putative fucosyltransferase-like protein (FucT2) (FucTB) (Fucosyltransferase 12) (AtFUT12),Glycoprotein 3-alpha-L-fucosyltransferase A (EC 2.4.1.214) (Core alpha-(1,3)-fucosyltransferase) (Fuc-T C3) (FucT1) (FucTA) (Fucosyltransferase 11) (AtFUT11) FUNCTION: May be involved in cell wall biosynthesis. May act as a fucosyltransferase.,FUNCTION: Involved in cell wall synthesis (Probable). Preferentially catalyzes the addition of fucose in alpha 1-3 linkage to the first GlcNAc residue next to the peptide chains in N-glycans (PubMed:11420147, PubMed:11696361, PubMed:21515584). {ECO:0000269|PubMed:11420147, ECO:0000269|PubMed:11696361, ECO:0000269|PubMed:21515584, ECO:0000305}. PATHWAY: Protein modification; protein glycosylation. ARA:AT1G49710-MONOMER;,ARA:AT3G19280-MONOMER;MetaCyc:AT3G19280-MONOMER; 2.4.1.214 57308,56205 Putative fucosyltransferase-like protein (FucT2) (FucTB) (Fucosyltransferase 12) (AtFUT12),Glycoprotein 3-alpha-L-fucosyltransferase A (EC 2.4.1.214) (Core alpha-(1,3)-fucosyltransferase) (Fuc-T C3) (FucT1) (FucTA) (Fucosyltransferase 11) (AtFUT11) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; fucosyltransferase activity [GO:0008417]; cell wall organization [GO:0071555]; protein glycosylation [GO:0006486],Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; alpha-(1->3)-fucosyltransferase activity [GO:0046920]; fucosyltransferase activity [GO:0008417]; glycoprotein 3-alpha-L-fucosyltransferase activity [GO:0018392]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; L-fucose catabolic process [GO:0042355]; protein glycosylation [GO:0006486]; protein N-linked glycosylation [GO:0006487] locus:2012217;,locus:2094078; AT1G49710,AT3G19280 glycoprotein 3-alpha-L-fucosyltransferase Os08g0472600 protein (Putative glycoprotein 3-alpha-L-fucosyltransferase) Q6ZDE5 Q6ZDE5_ORYSJ Os08g0472600 Os08g0472600 OSNPB_080472600 P0013B04.16 ENOG411DVQD SNX2A,SNX2B,SNX2b,MJG14.3 Q8L5Z7,B9DFS6,A0A1P8BF56,F4K5V9 SNX2A_ARATH,SNX2B_ARATH,A0A1P8BF56_ARATH,F4K5V9_ARATH Sorting nexin 2A,Sorting nexin 2B,Sorting nexin DISRUPTION PHENOTYPE: Reduced rosette size and inflorescence length as well as root gravitropism defects in snx2a and snx2b double mutant. Accumulation of storage protein globulin 12S in dry seeds. {ECO:0000269|PubMed:21156856}.,DISRUPTION PHENOTYPE: Reduced rosette size and inflorescence length as well as root gravitropism defects in snx2a and snx2b double mutant. {ECO:0000269|PubMed:21156856}. FUNCTION: Plays a role in vesicular protein sorting (By similarity). Acts at the crossroads between the secretory and endocytic pathways. Is involved in the endosome to vacuole protein transport and, as component of the membrane-associated retromer complex, is also involved in endosome-to-Golgi retrograde transport (By similarity). Also involved in the efficient sorting of seed storage protein globulin 12S. {ECO:0000250}.,FUNCTION: Plays a role in vesicular protein sorting. Acts at the crossroads between the secretory and endocytic pathways. Is involved in the endosome to vacuole protein transport and, as component of the membrane-associated retromer complex, is also involved in endosome-to-Golgi retrograde transport. {ECO:0000269|PubMed:19825596}. 65527,64282,63761,18216 Sorting nexin 2A,Sorting nexin 2B,Sorting nexin cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; Golgi apparatus [GO:0005794]; multivesicular body membrane [GO:0032585]; retromer complex [GO:0030904]; phosphatidylinositol binding [GO:0035091]; protein self-association [GO:0043621]; developmental process [GO:0032502]; endocytosis [GO:0006897]; protein maturation [GO:0051604]; protein transport [GO:0015031]; seedling development [GO:0090351]; vesicle organization [GO:0016050],cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; multivesicular body membrane [GO:0032585]; retromer complex [GO:0030904]; phosphatidylinositol binding [GO:0035091]; phospholipid binding [GO:0005543]; protein heterodimerization activity [GO:0046982]; developmental process [GO:0032502]; endocytosis [GO:0006897]; late endosome to vacuole transport [GO:0045324]; protein maturation [GO:0051604]; protein transport [GO:0015031]; seedling development [GO:0090351]; vesicle organization [GO:0016050]; vesicle-mediated transport [GO:0016192],phosphatidylinositol binding [GO:0035091],endosome [GO:0005768]; extrinsic component of membrane [GO:0019898]; phosphatidylinositol binding [GO:0035091]; endocytosis [GO:0006897]; vesicle organization [GO:0016050] TISSUE SPECIFICITY: Ubiquitously expressed but at a lower level in flowers, siliques, and senescing leaves. {ECO:0000269|PubMed:19825596, ECO:0000269|PubMed:21156856}.,TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:19825596, ECO:0000269|PubMed:21156856}. locus:2171218;,locus:2182880;,locus:2166158; AT5G58440,AT5G07120,AT5G37050 phosphatidylinositol binding Os05g0346100 protein (cDNA clone:J013073J06, full insert sequence) Q5W6R5 Q5W6R5_ORYSJ Os05g0346100 Os05g0346100 B1036C05.11 B1164G01.1 OsJ_18159 OSNPB_050346100 ENOG411DVQB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os02g0763200 protein (Putative xyloglucan fucosyltransferase) Q6Z6F7 Q6Z6F7_ORYSJ Os02g0763200 OSNPB_020763200 P0486G03.32 P0539D10.8 ENOG411DUZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411EDG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin carboxyl-terminal hydrolase NA NA NA NA NA NA NA ENOG411EDG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: serine threonine-protein phosphatase NA NA NA NA NA NA NA ENOG411EDG7 CHX10,CHX12,CHX11 Q58P69,Q9FYC0,Q9FYB9 CHX10_ARATH,CHX12_ARATH,CHX11_ARATH Cation/H(+) antiporter 10 (Protein CATION/H+ EXCHANGER 10) (AtCHX10),Cation/H(+) antiporter 12 (Protein CATION/H+ EXCHANGER 12) (AtCHX12),Cation/H(+) antiporter 11 (Protein CATION/H+ EXCHANGER 11) (AtCHX11) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 88143,85819,88433 Cation/H(+) antiporter 10 (Protein CATION/H+ EXCHANGER 10) (AtCHX10),Cation/H(+) antiporter 12 (Protein CATION/H+ EXCHANGER 12) (AtCHX12),Cation/H(+) antiporter 11 (Protein CATION/H+ EXCHANGER 11) (AtCHX11) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:15347787}.,TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:2082102;,locus:2082137;,locus:2082152; AT3G44930,AT3G44910,AT3G44920 Cation H exchanger NA NA NA NA NA NA NA ENOG411EDG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine hydrolase (FSH1) NA NA NA NA NA NA NA ENOG411DUZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain Putative cyclin-F3-1 (CycF3;1),Putative cyclin-F3-2 (CycF3;2),Os03g0208700 protein (Fragment),Os03g0208800 protein Q10Q63,Q10Q62,A0A0N7KGT2,A0A0P0VUI1 CCF31_ORYSJ,CCF32_ORYSJ,A0A0N7KGT2_ORYSJ,A0A0P0VUI1_ORYSJ CYCF3-1 Os03g0208700 LOC_Os03g11030,CYCF3-2 Os03g0208800 LOC_Os03g11040 OsJ_009490,Os03g0208700 OSNPB_030208700,Os03g0208800 OSNPB_030208800 ENOG411DVN4 TBL5 F4K5K4,A0A1P8BDG5 TBL5_ARATH,A0A1P8BDG5_ARATH Protein trichome birefringence-like 5,TRICHOME BIREFRINGENCE-LIKE 5 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 55389,43520 Protein trichome birefringence-like 5,TRICHOME BIREFRINGENCE-LIKE 5 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],integral component of membrane [GO:0016021] locus:2149947; AT5G20590 Pfam:DUF231 Lustrin A-like (Os06g0659400 protein) Q67U25 Q67U25_ORYSJ Os06g0659400 Os06g0659400 B1047G05.34 OsJ_22232 OSJNBa0051O02.6 OSNPB_060659400 ENOG411DVN5 Q8VZP3,Q9SJ68,Q9SJ67,B9DGK2,A0A1P8B223 Q8VZP3_ARATH,Q9SJ68_ARATH,Q9SJ67_ARATH,B9DGK2_ARATH,A0A1P8B223_ARATH Uncharacterized protein At2g35810 (Ureidoglycolate hydrolase),At2g35820 (Expressed protein) (Ureidoglycolate hydrolase),At2g35830/F11F19.26 (Expressed protein) (Ureidoglycolate hydrolase),AT2G35830 protein (Ureidoglycolate hydrolase),Ureidoglycolate hydrolase 22028,21279,20890,20232,31954 Uncharacterized protein At2g35810 (Ureidoglycolate hydrolase),At2g35820 (Expressed protein) (Ureidoglycolate hydrolase),At2g35830/F11F19.26 (Expressed protein) (Ureidoglycolate hydrolase),AT2G35830 protein (Ureidoglycolate hydrolase),Ureidoglycolate hydrolase cytosol [GO:0005829]; ureidoglycolate hydrolase activity [GO:0004848],ureidoglycolate hydrolase activity [GO:0004848] locus:2039205;,locus:2039190;,locus:2039305; AT2G35810,AT2G35820,AT2G35830 NA Homoserine dehydrogenase-like (Os01g0833200 protein),Os01g0833150 protein Q5QLC2,Q5QLC3 Q5QLC2_ORYSJ,Q5QLC3_ORYSJ Os01g0833200 Os01g0833200 OsJ_03972 OSNPB_010833200 P0460C04.20,P0460C04.19 Os01g0833150 OSNPB_010833150 ENOG411EDGY F4J4C0,A0A1I9LPB6 F4J4C0_ARATH,A0A1I9LPB6_ARATH Cytochrome P450 superfamily protein R-ATH-211916;R-ATH-5365859; 54946,43119 Cytochrome P450 superfamily protein endoplasmic reticulum [GO:0005783]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2075964; AT3G44970 cytochrome P450 family protein NA NA NA NA NA NA NA ENOG411E7A9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7A8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0522800 protein,Os10g0522700 protein Q9AUY3,Q9AUY2 Q9AUY3_ORYSJ,Q9AUY2_ORYSJ LOC_Os10g37870 Os10g0522800 OsJ_32202 OSJNBb0028C01.34 OSNPB_100522800,LOC_Os10g37860 Os10g0522700 OsJ_32201 OSJNBb0028C01.31 OSNPB_100522700 ENOG411E7A6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E7A5 NRPB12,NRPB12L Q9FLM8,Q9C8M4,A0A1P8AV79 NRPBC_ARATH,RPBCL_ARATH,A0A1P8AV79_ARATH DNA-directed RNA polymerases II, IV and V subunit 12 (DNA-directed RNA Polymerase II subunit K),DNA-directed RNA polymerase subunit 12-like protein,DNA directed RNA polymerase, 7 kDa subunit FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 5897,7137,7080 DNA-directed RNA polymerases II, IV and V subunit 12 (DNA-directed RNA Polymerase II subunit K),DNA-directed RNA polymerase subunit 12-like protein,DNA directed RNA polymerase, 7 kDa subunit DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed RNA polymerase V complex [GO:0000419]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383],DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; pollen tube growth [GO:0009860]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] locus:2163051;,locus:2024907; AT5G41010,AT1G53690 RNA polymerases I II and III Os07g0105100 protein A0A0P0X1I6 A0A0P0X1I6_ORYSJ Os07g0105100 OSNPB_070105100 ENOG411E7A4 RPP3A,RPP3B,MJB24.10 Q9SVZ6,Q9LVC9,F4KAM0,B3H4N7 RLA31_ARATH,RLA32_ARATH,F4KAM0_ARATH,B3H4N7_ARATH 60S acidic ribosomal protein P3-1,60S acidic ribosomal protein P3-2,60S acidic ribosomal protein family FUNCTION: Plays an important role in the elongation step of protein synthesis. {ECO:0000250}. 11849,11863,8945,11764 60S acidic ribosomal protein P3-1,60S acidic ribosomal protein P3-2,60S acidic ribosomal protein family cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translational elongation [GO:0006414],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translational elongation [GO:0006414],ribosome [GO:0005840],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translational elongation [GO:0006414] locus:2117562;,locus:2165620; AT4G25890,AT5G57290 60S acidic ribosomal protein 60S acidic ribosomal protein P3 (P1/P2-like),Os01g0231700 protein (Putative acidic ribosomal protein P3a) (cDNA clone:002-128-C07, full insert sequence) P56724,Q5NB69 RLA3_ORYSJ,Q5NB69_ORYSJ Os06g0701400 LOC_Os06g48780 P0596H10.6,Os01g0231700 OsJ_00993 OSNPB_010231700 P0431F01.21 FUNCTION: Plays an important role in the elongation step of protein synthesis. ENOG411E7A3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Os07g0512250 protein Q84NW7 Q84NW7_ORYSJ P0580A11.123 Os07g0512250 OsJ_24420 OSJNBb0041J06.104 OSNPB_070512250 ENOG411E7AY NRP1 Q9ZQ80 NDRP1_ARATH Nodulin-related protein 1 (AtNRP1) (RPS2-interacting protein 11) DISRUPTION PHENOTYPE: No obvious phenotype under heat stress (PubMed:20016941). Impaired resistance to avirulent bacteria P.syringae pv. tomato DC3000 (avrRpt2) (Ref.5). {ECO:0000269|PubMed:20016941, ECO:0000269|Ref.5}. FUNCTION: Prevents accumulation of abscisic acid (ABA) after heat treatment, thus reducing thermotolerance. May be a negative regulator of the ABA signaling/synthesis pathway (PubMed:20016941). Required for defense responses against avirulent bacteria such as P.syringae pv. tomato DC3000 (avrRpt2) (Ref.5). {ECO:0000269|PubMed:20016941, ECO:0000269|Ref.5}. 19701 Nodulin-related protein 1 (AtNRP1) (RPS2-interacting protein 11) abscisic acid-activated signaling pathway [GO:0009738]; defense response [GO:0006952]; positive regulation of defense response to bacterium [GO:1900426]; response to bacterium [GO:0009617]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Accumulates in meristematic tissues such as shoot apex and root tips, young leaf veins, stamens and stigmas of flowers, and abscission layers of young siliques. In young seedlings, present in root tips and junctions of roots and hypocotyls. Highest levels are reached in ten days old seedlings. In adult plants, confined to vasculature and hydathodes in leaves, and meristems. Also observed in floral developing organs. {ECO:0000269|PubMed:20016941}. TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:20016941}. locus:2063788; AT2G03440 NA Os03g0210600 protein (Fragment) A0A0P0VUL0 A0A0P0VUL0_ORYSJ Os03g0210600 OSNPB_030210600 ENOG411E7AW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0660000 protein Q8S3N7 Q8S3N7_ORYSJ 24K23.20 Os04g0660000 OSNPB_040660000 ENOG411E7AV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os10g0486300 protein (Fragment) A0A0P0XVG3 A0A0P0XVG3_ORYSJ Os10g0486300 OSNPB_100486300 ENOG411E7AU PRE3 Q9CA64 PRE3_ARATH Transcription factor PRE3 (Basic helix-loop-helix protein 135) (AtbHLH135) (bHLH 135) (Protein ACTIVATION-TAGGED BRI1 SUPPRESSOR 1) (ATBS1) (Protein PACLOBUTRAZOL RESISTANCE 3) (Protein TARGET OF MOOPTEROS 7) (Transcription factor EN 67) (bHLH transcription factor bHLH135) FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor required for MONOPTEROS-dependent root initiation in embryo. Promotes the correct definition of the hypophysis cell division plane. Transcriptionally controlled by MONOPTEROS. Moves from its site of synthesis in pro-embryos cells into the hypophysis. Regulates brassinosteroid (BR) signaling by sequestering negative BR signaling components. May function as positive regulator of gibberellin signaling. May play a role in the regulation of light signaling and possibly auxin signaling. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:22339648}. MISCELLANEOUS: Plants over-expressing PRE3 show long hypocotyls, pale green and slightly narrow leaves, elongated petioles and early flowering. They are not sensitive to the gibberellin inhibitor paclobutrazol during seed germination (PubMed:16527868, PubMed:22339648). {ECO:0000305|PubMed:16527868, ECO:0000305|PubMed:22339648}. 10581 Transcription factor PRE3 (Basic helix-loop-helix protein 135) (AtbHLH135) (bHLH 135) (Protein ACTIVATION-TAGGED BRI1 SUPPRESSOR 1) (ATBS1) (Protein PACLOBUTRAZOL RESISTANCE 3) (Protein TARGET OF MOOPTEROS 7) (Transcription factor EN 67) (bHLH transcription factor bHLH135) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; embryonic root morphogenesis [GO:0010086]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of growth [GO:0040008]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: At the globular stage, expressed in cells adjacent to the hypophysis and at later embryonic stages, restricted to the future root stem cells. {ECO:0000269|PubMed:20220754}. TISSUE SPECIFICITY: Expressed in root and shoot meristems, and young siliques. Low levels detected in all aerial tissues. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:22339648}. locus:2019210; AT1G74500 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E7AT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor NA NA NA NA NA NA NA ENOG411E7AS O22831,A0A1P8B057 O22831_ARATH,A0A1P8B057_ARATH At2g43720/F18O19.17 (FAM136A-like protein (DUF842)) (Uncharacterized protein At2g43720),FAM136A-like protein (DUF842) 16912,12445 At2g43720/F18O19.17 (FAM136A-like protein (DUF842)) (Uncharacterized protein At2g43720),FAM136A-like protein (DUF842) locus:2044019; AT2G43720 Eukaryotic protein of unknown function (DUF842) NA NA NA NA NA NA NA ENOG411E7AR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0631300 protein (cDNA clone:001-122-D04, full insert sequence) Q8LHN8 Q8LHN8_ORYSJ P0519E12.107 Os07g0631300 OsJ_25237 OSNPB_070631300 ENOG411E7AN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0474100 protein A0A0N7KQ04 A0A0N7KQ04_ORYSJ Os08g0474100 OSNPB_080474100 ENOG411E7AH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os01g0808900 protein,Os05g0390800 protein Q8S202,Q75KH8 Q8S202_ORYSJ,Q75KH8_ORYSJ Os01g0808900 Os01g0808900 OSNPB_010808900 P0468B07.12,Os05g0390800 OJ1057_G07.4 OSNPB_050390800 ENOG411E7AE SAUR60 Q9LMV6 Q9LMV6_ARATH F5M15.19 (SAUR-like auxin-responsive protein family) (Uncharacterized protein At1g20470) (Uncharacterized protein At1g20470/F5M15_18) 16579 F5M15.19 (SAUR-like auxin-responsive protein family) (Uncharacterized protein At1g20470) (Uncharacterized protein At1g20470/F5M15_18) response to auxin [GO:0009733] locus:2034351; AT1G20470 auxin-responsive NA NA NA NA NA NA NA ENOG411E7AD A0A1P8AZT9,Q5BPS4,B3H6W6,F4INT5,F4INT8,A0A1P8AZU1,A0A1P8AZT8 A0A1P8AZT9_ARATH,Q5BPS4_ARATH,B3H6W6_ARATH,F4INT5_ARATH,F4INT8_ARATH,A0A1P8AZU1_ARATH,A0A1P8AZT8_ARATH Uncharacterized protein 74302,71084,53495,80660,74226,64726,63609 Uncharacterized protein locus:2064412; AT2G30480 NA NA NA NA NA NA NA NA ENOG411E7AC Q9SJ17 Q9SJ17_ARATH At2g21820 (Expressed protein) (Seed maturation protein) (Uncharacterized protein At2g21820) 8001 At2g21820 (Expressed protein) (Seed maturation protein) (Uncharacterized protein At2g21820) locus:2052511; AT2G21820 seed maturation protein PM41 Os08g0385000 protein Q6YW59 Q6YW59_ORYSJ Os08g0385000 B1090H08.46 OsJ_27154 OSNPB_080385000 ENOG411E7AB SMR9 Q3ECS5 SMR9_ARATH Cyclin-dependent protein kinase inhibitor SMR9 (Protein SIAMESE-RELATED 9) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250|UniProtKB:Q9LZ78}. 12709 Cyclin-dependent protein kinase inhibitor SMR9 (Protein SIAMESE-RELATED 9) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:504956327; AT1G51355 NA NA NA NA NA NA NA NA ENOG411EDGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EKMG O80949 O80949_ARATH Cysteine proteinases superfamily protein (Uncharacterized protein At2g39320) 22398 Cysteine proteinases superfamily protein (Uncharacterized protein At2g39320) locus:2056133; AT2G39320 OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411EKMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411EKMH OTU7 F4K3M6,A0A1P8BBA2 F4K3M6_ARATH,A0A1P8BBA2_ARATH OTU-containing deubiquitinating enzyme OTU7 isoform i (SEC-C motif-containing protein / OTU-like cysteine protease family protein),SEC-C motif-containing protein / OTU-like cysteine protease family protein 41534,32290 OTU-containing deubiquitinating enzyme OTU7 isoform i (SEC-C motif-containing protein / OTU-like cysteine protease family protein),SEC-C motif-containing protein / OTU-like cysteine protease family protein peptidase activity [GO:0008233] locus:2155588; AT5G67170 OTU domain-containing protein Os04g0670400 protein A0A0P0WG34,A0A0P0WG44 A0A0P0WG34_ORYSJ,A0A0P0WG44_ORYSJ Os04g0670400 OSNPB_040670400 ENOG411EKMS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EKMQ KMS2,KMS1 F4I8Q7,Q5XF36,C0Z3L0,F4JII6,F4JII7 KMS2_ARATH,KMS1_ARATH,C0Z3L0_ARATH,F4JII6_ARATH,F4JII7_ARATH Vacuole membrane protein KMS2 (Protein KILLING ME SLOWLY 2),Vacuole membrane protein KMS1 (Protein KILLING ME SLOWLY 1),AT1G05360 protein (Vacuole membrane-like protein),SNARE associated Golgi protein family FUNCTION: Involved in the early secretory pathway. Required for the correct export of secretory products from the endoplasmic reticulum (ER) and involved in the maintenance of ER integrity. {ECO:0000269|PubMed:21294794}. 46619,45848,38601,45157,39138 Vacuole membrane protein KMS2 (Protein KILLING ME SLOWLY 2),Vacuole membrane protein KMS1 (Protein KILLING ME SLOWLY 1),AT1G05360 protein (Vacuole membrane-like protein),SNARE associated Golgi protein family endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; pre-autophagosomal structure [GO:0000407]; endomembrane system organization [GO:0010256]; endoplasmic reticulum organization [GO:0007029]; exocytosis [GO:0006887]; Golgi organization [GO:0007030]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; pre-autophagosomal structure [GO:0000407]; endomembrane system organization [GO:0010256]; endoplasmic reticulum organization [GO:0007029]; exocytosis [GO:0006887]; Golgi organization [GO:0007030]; vesicle-mediated transport [GO:0016192],integral component of membrane [GO:0016021] locus:2207180;,locus:2129530; AT1G05360,AT4G14950 SNARE associated Golgi protein NA NA NA NA NA NA NA ENOG411DVNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0730900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6YWP8 Q6YWP8_ORYSJ Os02g0730900 OsJ_08263 OSJNBa0072H09.44 OSNPB_020730900 P0617A09.23 ENOG411EKM7 ZCW7 Q9SLT8 Q9SLT8_ARATH ZCW7 (ZCW7 protein) 37574 ZCW7 (ZCW7 protein) locus:2202837; AT1G59600 NA NA NA NA NA NA NA NA ENOG411EKM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLASP N terminal NA NA NA NA NA NA NA ENOG411DVNM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease Os07g0169800 protein A0A0P0X2X3 A0A0P0X2X3_ORYSJ Os07g0169800 OSNPB_070169800 ENOG411EKM2 Q9C5F3,F4JKG2 Q9C5F3_ARATH,F4JKG2_ARATH Uncharacterized protein At4g28025,Uncharacterized protein 16951,16049 Uncharacterized protein At4g28025,Uncharacterized protein chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535] locus:505006527; AT4G28025 NA NA NA NA NA NA NA NA ENOG411E0SK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411E0SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nudix hydrolase Os05g0209400 protein (cDNA clone:002-120-E02, full insert sequence) Q75IK6 Q75IK6_ORYSJ Os05g0209400 Os05g0209400 OsJ_17522 OSJNBb0016G07.6 OSNPB_050209400 ENOG411E0SI ATL59,ATL58,ATL7 Q9SN27,Q570X5,Q9SN28 ATL59_ARATH,ATL58_ARATH,ATL7_ARATH E3 ubiquitin-protein ligase ATL59 (EC 2.3.2.27) (RING-H2 finger protein ATL59) (RING-type E3 ubiquitin transferase ATL59),RING-H2 finger protein ATL58 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL58),RING-H2 finger protein ATL7 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL7) FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, and UBC34 in vitro. {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 24871,29116,26162 E3 ubiquitin-protein ligase ATL59 (EC 2.3.2.27) (RING-H2 finger protein ATL59) (RING-type E3 ubiquitin transferase ATL59),RING-H2 finger protein ATL58 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL58),RING-H2 finger protein ATL7 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL7) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; protein ubiquitination [GO:0016567],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567] locus:2124700;,locus:2007008;,locus:2124695; AT4G10160,AT1G33480,AT4G10150 RING-H2 finger protein Os02g0557300 protein (cDNA clone:J013093J16, full insert sequence) Q0E0D6 Q0E0D6_ORYSJ Os02g0557300 Os02g0557300 OSNPB_020557300 ENOG411E0SN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein OSJNBa0088H09.16 protein (Os04g0685400 protein) (cDNA clone:006-212-B04, full insert sequence) (cDNA clone:J023014D16, full insert sequence) (cDNA clone:J033133J15, full insert sequence) Q7XPU0 Q7XPU0_ORYSJ Os04g0685400 Os04g0685400 OSJNBa0088H09.16 OSNPB_040685400 ENOG411E0SM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVNV Q0WMV5,Q501E0,A0A1P8AXI2 Q0WMV5_ARATH,Q501E0_ARATH,A0A1P8AXI2_ARATH Nodulin-like / Major Facilitator Superfamily protein (Nodulin-like protein),At2g34355 (Major facilitator superfamily protein),Major facilitator superfamily protein 57566,56932,40681 Nodulin-like / Major Facilitator Superfamily protein (Nodulin-like protein),At2g34355 (Major facilitator superfamily protein),Major facilitator superfamily protein integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2040809;,locus:1005716659; AT2G34350,AT2G34355 Nodulin-like Expressed protein (Os12g0639100 protein) (cDNA clone:001-114-H03, full insert sequence) (cDNA clone:J033069B07, full insert sequence),Os12g0639100 protein Q2QLK3,A0A0P0YDM4 Q2QLK3_ORYSJ,A0A0P0YDM4_ORYSJ LOC_Os12g44180 Os12g0639100 OsJ_37017 OSNPB_120639100,Os12g0639100 OSNPB_120639100 ENOG411E0SA NGR1 Q58G53 Q58G53_ARATH NGR1 33715 NGR1 locus:2018821; AT1G17400 NA Os03g0406300 protein A0A0P0VZE0 A0A0P0VZE0_ORYSJ Os03g0406300 OSNPB_030406300 ENOG411DVNZ MRN17.5 Q944A0,C0Z225 Q944A0_ARATH,C0Z225_ARATH ARM repeat superfamily protein (At5g22820/MRN17_5),ARM repeat superfamily protein (AT5G22820 protein) 54289,59453 ARM repeat superfamily protein (At5g22820/MRN17_5),ARM repeat superfamily protein (AT5G22820 protein) locus:2172636; AT5G22820 NA Expressed protein (Os03g0684100 protein) (cDNA clone:J023024G08, full insert sequence) Q10F23 Q10F23_ORYSJ Os03g0684100 LOC_Os03g47980 Os03g0684100 OSNPB_030684100 ENOG411E0SR ATR Q9FKS4,A0A1R7T394 ATR_ARATH,A0A1R7T394_ARATH Serine/threonine-protein kinase ATR (AtATR) (EC 2.7.11.1) (Ataxia telangiectasia-mutated and Rad3-related homolog) (DNA repair protein ATR) (Rad3-like protein) (AtRAD3),Ataxia telangiectasia-mutated and RAD3-like protein DISRUPTION PHENOTYPE: Suppressor of sni1 mutation symptoms including the accumulation of DNA damage leading to a constitutively activated DNA damage responses (DDR) and increased basal expression of pathogenesis-related (PR) genes. {ECO:0000269|PubMed:24207055}. atr/tert mutants show a more rapid loss of telomeric length than tert and atm/tert mutants and show a more rapid degeneration in growth habit becoming small with aberrant leaf shape and very low fertility by the third generation whereas tert mutants and tert/atm mutants show normal growth features until later generations. These mutants also have marked defects in chromosomal organization by G3 as evidenced by the presence of anaphase bridges sometimes involving multiple chromosomes a phenotype not seen in tert or atm/tert mutants.,Double mutants are defective in telomere maintainance. Mutants form anaphase bridges. FUNCTION: Probable serine/threonine kinase. Plays a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Seems to be required for the G2-phase checkpoint in response to replication blocks but not absolutely required in the G2-arrest response to double-strand breaks. May also be involved in the meiosis process. Required for the basal expression of RNR1 (ribonucleotide reductase large subunit). Acts in concert with telomerase to maintain telomeric DNA tracts. Not required for telomere length homeostasis. Required for effective immune responses that involve activation of DNA damage responses (PubMed:24207055). {ECO:0000269|PubMed:15075397, ECO:0000269|PubMed:15772150, ECO:0000269|PubMed:16166376, ECO:0000269|PubMed:24207055}. MISCELLANEOUS: Loss-of-function mutations (T-DNA insertion) are hypersensitive to replication antagonists, including UV light, aphidicolin, and hydroxyurea, and are defective in G2 checkpoints induced by these agents. R-ATH-3371453; p53 signaling pathway (04115),HTLV-I infection (05166),Fanconi anemia pathway (03460),Cell cycle (04110) 2.7.11.1 302366,302437 Serine/threonine-protein kinase ATR (AtATR) (EC 2.7.11.1) (Ataxia telangiectasia-mutated and Rad3-related homolog) (DNA repair protein ATR) (Rad3-like protein) (AtRAD3),Ataxia telangiectasia-mutated and RAD3-like protein nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; cell cycle [GO:0007049]; defense response [GO:0006952]; DNA repair [GO:0006281]; double-strand break repair via nonhomologous end joining [GO:0006303]; multicellular organism reproduction [GO:0032504]; regulation of chromosome organization [GO:0033044]; regulation of defense response [GO:0031347]; regulation of DNA repair [GO:0006282]; regulation of telomere maintenance [GO:0032204]; response to aluminum ion [GO:0010044]; response to gamma radiation [GO:0010332]; telomere maintenance in response to DNA damage [GO:0043247]; telomere maintenance via telomerase [GO:0007004],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2164481; AT5G40820 a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence ST -Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage thereby regulating DNA damage response mechanism Serine/threonine-protein kinase ATR (EC 2.7.11.1),Os06g0724700 protein (Fragment) Q5Z987,Q0D9E3 ATR_ORYSJ,Q0D9E3_ORYSJ Os06g0724700 LOC_Os06g50910 P0535F09.39 P0548E04.6,Os06g0724700 Os06g0724700 OSNPB_060724700 FUNCTION: Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism (By similarity). {ECO:0000250}. ENOG411E0SS WDL7 Q67Y69 WDL7_ARATH Protein WVD2-like 7 FUNCTION: Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. {ECO:0000250|UniProtKB:Q8GYX9}. 53245 Protein WVD2-like 7 cytoplasm [GO:0005737]; microtubule [GO:0005874] TISSUE SPECIFICITY: Expressed in seedlings. {ECO:0000269|PubMed:23653471}. locus:2013985; AT1G70950 Targeting protein for Xklp2 (TPX2) NA NA NA NA NA NA NA ENOG411E0SP Q9FY77,F4KCL0,A0A1P8BFX0 Q9FY77_ARATH,F4KCL0_ARATH,A0A1P8BFX0_ARATH RNA polymerase III RPC4 (Uncharacterized protein T5E8_180),RNA polymerase III RPC4 30419,24079,25932 RNA polymerase III RPC4 (Uncharacterized protein T5E8_180),RNA polymerase III RPC4 DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase III promoter [GO:0006383] locus:2184827; AT5G09380 RNA polymerase III RPC4 Os04g0394500 protein (Fragment) A0A0P0W9L1 A0A0P0W9L1_ORYSJ Os04g0394500 OSNPB_040394500 ENOG411E0SQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Lectin-like (Os09g0336400 protein),Os09g0341100 protein,Os09g0339000 protein (Receptor kinase Lecrk-like) (cDNA clone:J013040D23, full insert sequence),Os09g0334800 protein (cDNA clone:J023140A19, full insert sequence),Os09g0335200 protein Q6ERH1,Q0J2H9,Q6ESN7,B7ER53,A0A0P0XLY8 Q6ERH1_ORYSJ,Q0J2H9_ORYSJ,Q6ESN7_ORYSJ,B7ER53_ORYSJ,A0A0P0XLY8_ORYSJ Os09g0336400 OJ1253_E02.38 OsJ_28944 OSNPB_090336400,Os09g0341100 OSNPB_090341100,Os09g0339000 OJ1104_G11.7 OSNPB_090339000,Os09g0334800 OsJ_28938 OSNPB_090334800,Os09g0335200 OSNPB_090335200 ENOG411E0ST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Beta-eliminating lyase Os06g0345200 protein (Fragment) A0A0P0WW75,A0A0P0WWH0 A0A0P0WW75_ORYSJ,A0A0P0WWH0_ORYSJ Os06g0345200 OSNPB_060345200 ENOG411DZEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0742400 protein (Putative LRK1 protein) Q5JKV6,Q5JKV7 Q5JKV6_ORYSJ,Q5JKV7_ORYSJ P0439E07.18-2 Os01g0742400 OSNPB_010742400,P0439E07.18-1 Os01g0742400 OSNPB_010742400 ENOG411E152 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal recognition particle receptor beta subunit NA NA NA NA NA NA NA ENOG411E154 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Microtubule associated protein (MAP65/ASE1 family) Os02g0126300 protein (Putative microtubule-associated protein MAP65-1a) (cDNA clone:J023063N13, full insert sequence) Q6Z2N0 Q6Z2N0_ORYSJ Os02g0126300 OsJ_05210 OSNPB_020126300 P0482F12.14 ENOG411E15A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pirin C-terminal cupin domain Os08g0364900 protein Q0J657 Q0J657_ORYSJ Os08g0364900 Os08g0364900 OSNPB_080364900 ENOG411E15C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease Os06g0503700 protein,CCR4-NOT transcription complex,subunit 7-like (Os06g0536000 protein),Os06g0503900 protein Q654Y2,Q5Z5E6,B9FTH1 Q654Y2_ORYSJ,Q5Z5E6_ORYSJ,B9FTH1_ORYSJ Os06g0503700 OJ1288_C01.3 OsJ_21475 OSNPB_060503700 P0564B04.20,Os06g0536000 OSJNBa0001B21.34 OSNPB_060536000 P0551A03.2,Os06g0503900 OsJ_21476 OSNPB_060503900 ENOG411E15P BHLH63 Q8GY61 BH063_ARATH Transcription factor bHLH63 (Basic helix-loop-helix protein 63) (AtbHLH63) (bHLH 63) (Protein CRYPTOCHROME INTERACTING BASIC-HELIX-LOOP-HELIX 1) (Transcription factor EN 84) (bHLH transcription factor bHLH063) cib1 or cib5 single mutant shows no obvious phenotype and cib1cib5 double mutant showed a mild but statistically significant delay of flowering under a photoperiodic inductive condition (plants were grown in short-day photoperiod (9h light/15h dark) for 20 days and transfered to long-day photoperiod (16h light/ 8h dark) for 4 days and removed back to short-day to continue grow until flowering. FUNCTION: Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. 37540 Transcription factor bHLH63 (Basic helix-loop-helix protein 63) (AtbHLH63) (bHLH 63) (Protein CRYPTOCHROME INTERACTING BASIC-HELIX-LOOP-HELIX 1) (Transcription factor EN 84) (bHLH transcription factor bHLH063) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; positive regulation of flower development [GO:0009911]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and stems. {ECO:0000269|PubMed:12679534}. locus:2139484; AT4G34530 Transcription factor Os02g0705500 protein (Putative bHLH transcription factor) (cDNA clone:001-038-D03, full insert sequence) Q6Z2G7 Q6Z2G7_ORYSJ Os02g0705500 Os02g0705500 OSNPB_020705500 P0680A05.9 ENOG411E0HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os06g0306500 protein,Os05g0203912 protein A0A0P0WW44,A0A0N7KKB3 A0A0P0WW44_ORYSJ,A0A0N7KKB3_ORYSJ Os06g0306500 OSNPB_060306500,Os05g0203912 OSNPB_050203912 ENOG411E15Z CYP82C2,CYP82C4,CYP82C3 O49394,Q9SZ46,O49396 C82C2_ARATH,C82C4_ARATH,C82C3_ARATH Cytochrome P450 82C2 (EC 1.14.-.-),Cytochrome P450 82C4 (EC 1.14.-.-),Cytochrome P450 82C3 (EC 1.14.-.-) DISRUPTION PHENOTYPE: Increased susceptibility to virulent Pseudomonas syringae. {ECO:0000269|PubMed:26352477}.,DISRUPTION PHENOTYPE: Increased root length at seedling stage. {ECO:0000269|PubMed:21315474}. Sensitive to jasmonic acid; Susceptible to necrotrophic fungi-C. Li-2010 FUNCTION: Involved in the biosynthetic pathway to 4-hydroxyindole-3-carbonyl nitrile (4-OH-ICN), a cyanogenic metabolite required for inducible pathogen defense. Converts indole-3-carbonyl nitrile (ICN) into 4-OH-ICN (PubMed:26352477). Can hydroxylate 8-methoxypsoralen to form 5-hydroxy-8-methoxypsoralen in vivo and in vitro (PubMed:18291319). {ECO:0000269|PubMed:18291319, ECO:0000269|PubMed:26352477}.,FUNCTION: Can hydroxylate 8-methoxypsoralen to form 5-hydroxy-8-methoxypsoralen in vivo and in vitro. Involved in the early iron deficiency response, possibly through an IDE1-like mediated pathway. {ECO:0000269|PubMed:18291319, ECO:0000269|PubMed:21315474}. MISCELLANEOUS: Plants overexpressing CYP82C2, can hydroxylate and subsequently glycosylate 8-methoxypsoralen.,MISCELLANEOUS: Plants overexpressing CYP82C4, can hydroxylate and subsequently glycosylate 8-methoxypsoralen. ARA:AT4G31970-MONOMER;,ARA:AT4G31940-MONOMER;,ARA:AT4G31950-MONOMER; 1.14.-.- 59002,58919,57886 Cytochrome P450 82C2 (EC 1.14.-.-),Cytochrome P450 82C4 (EC 1.14.-.-),Cytochrome P450 82C3 (EC 1.14.-.-) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cellular response to hypoxia [GO:0071456]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; cellular response to iron ion [GO:0071281]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2116652;,locus:2116607;,locus:2116622; AT4G31970,AT4G31940,AT4G31950 cytochrome P450 NA NA NA NA NA NA NA ENOG411E0HY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA major facilitator superfamily antiporter Major facilitator superfamily antiporter (Os01g0279400 protein) Q8H6D6 Q8H6D6_ORYSJ mfs1 Os01g0279400 OSNPB_010279400 P0003H10.5 ENOG411E0HW rps2 P56797 RR2_ARATH 30S ribosomal protein S2, chloroplastic 26904 30S ribosomal protein S2, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrial small ribosomal subunit [GO:0005763]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954640; ATCG00160 ribosomal protein S2 30S ribosomal protein S2, chloroplastic P0C482 RR2_ORYSJ rps2 LOC_Osp1g00270 Nip040 ENOG411E0HR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like NA NA NA NA NA NA NA ENOG411E0HQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Actin Os08g0128300 protein A0A0P0XBI9 A0A0P0XBI9_ORYSJ Os08g0128300 OSNPB_080128300 ENOG411DWGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os02g0118875 protein (Fragment),Os02g0118900 protein,Os11g0486000 protein,Os02g0118950 protein,Os04g0620950 protein (Fragment),Os04g0620800 protein,Os04g0621500 protein,Os11g0485900 protein (Fragment),Os02g0118800 protein A0A0N7KEK6,A0A0P0VE51,A0A0P0Y2K0,A0A0P0VE28,A0A0P0WFB4,A0A0P0WEU8,A0A0P0WEY1,A0A0P0Y278,A0A0P0VDY1 A0A0N7KEK6_ORYSJ,A0A0P0VE51_ORYSJ,A0A0P0Y2K0_ORYSJ,A0A0P0VE28_ORYSJ,A0A0P0WFB4_ORYSJ,A0A0P0WEU8_ORYSJ,A0A0P0WEY1_ORYSJ,A0A0P0Y278_ORYSJ,A0A0P0VDY1_ORYSJ Os02g0118875 OSNPB_020118875,Os02g0118900 OSNPB_020118900,Os11g0486000 OSNPB_110486000,Os02g0118950 OSNPB_020118950,Os04g0620950 OSNPB_040620950,Os04g0620800 OSNPB_040620800,Os04g0621500 OSNPB_040621500,Os11g0485900 OSNPB_110485900,Os02g0118800 OSNPB_020118800 ENOG411DWGM EYE Q9FGN0 Q9FGN0_ARATH Conserved oligomeric Golgi complex component-related / COG complex component-like protein (Similarity to unknown protein) Pleiotropic defects in morphology. Defects in cell shape and the random production of leaf primordia in the shoot apex are particularly prominent abnormalities. The shoot apex is flat as opposed to domed. Embryo defective; Cotyledon-Y. Machida-2008 R-ATH-6807878;R-ATH-6811438; 92259 Conserved oligomeric Golgi complex component-related / COG complex component-like protein (Similarity to unknown protein) cytosol [GO:0005829]; Golgi transport complex [GO:0017119]; cell growth [GO:0016049]; embryo development ending in seed dormancy [GO:0009793]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886]; meristem development [GO:0048507]; meristem structural organization [GO:0009933]; protein retention in Golgi apparatus [GO:0045053]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890]; shoot system morphogenesis [GO:0010016] locus:2163660; AT5G51430 Oligomeric golgi complex Os06g0669600 protein (Fragment) A0A0P0WZV8 A0A0P0WZV8_ORYSJ Os06g0669600 OSNPB_060669600 ENOG411E0HJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os03g0236675 protein,Os07g0690600 protein,Os02g0513400 protein Q10PF3,Q8H3Z2,A0A0P0VJH1 Q10PF3_ORYSJ,Q8H3Z2_ORYSJ,A0A0P0VJH1_ORYSJ Os03g0236675 LOC_Os03g13340 OSNPB_030236675,P0597G07.125 Os07g0690600 OsJ_25667 OSNPB_070690600,Os02g0513400 OSNPB_020513400 ENOG411E0HB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SUMO sentrin specific peptidase family member 8 Os11g0130800 protein,Os12g0127650 protein Q0IUW7,A0A0P0Y6S8 Q0IUW7_ORYSJ,A0A0P0Y6S8_ORYSJ Os11g0130800 OSNPB_110130800,Os12g0127650 OSNPB_120127650 ENOG411DZE4 DTX46 Q8W4G3,F4IGL9 DTX46_ARATH,F4IGL9_ARATH Protein DETOXIFICATION 46, chloroplastic (AtDTX46) (Multidrug and toxic compound extrusion protein 46) (MATE protein 46) (Protein EDS5 HOMOLOGUE),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) 60000,59681 Protein DETOXIFICATION 46, chloroplastic (AtDTX46) (Multidrug and toxic compound extrusion protein 46) (MATE protein 46) (Protein EDS5 HOMOLOGUE),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] TISSUE SPECIFICITY: Constitutively expressed in all green tissues. {ECO:0000269|PubMed:26055508}. locus:2050140; AT2G21340 MATE efflux family protein 4 chloroplastic-like Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) A0A0P0VE97 A0A0P0VE97_ORYSJ Os02g0122200 OSNPB_020122200 ENOG411DZE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0481300 protein (Putative nucleotide-binding leucine-rich-repeat protein 1),NBS-LRR type disease resistance protein RPG1-B-like (Os09g0313500 protein) (cDNA clone:J013039H12, full insert sequence) Q8GVQ8,Q69KG1 Q8GVQ8_ORYSJ,Q69KG1_ORYSJ P0434A03.140 Os07g0481300 OSNPB_070481300,Os09g0313500 Os09g0313500 OsJ_28819 OSJNBa0054E15.11 OSNPB_090313500 ENOG411E0H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NAC domain-containing protein 71 (ONAC071) (OsNAC5),Os11g0184900 protein (OsNAC5 protein [imported]-rice) Q53NF7,Q53NF6 NAC71_ORYSJ,Q53NF6_ORYSJ NAC071 NAC5 Os11g0184900 LOC_Os11g08210,Os11g0184900 LOC_Os11g08210 OSNPB_110184900 FUNCTION: Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. MISCELLANEOUS: Plants overexpressing NAC071 exhibit improved tolerance to salt stress. {ECO:0000269|PubMed:20632034}. ENOG411EGGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PBPb NA NA NA NA NA NA NA ENOG411EGGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411DXMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA von Willebrand factor type A domain Os11g0687100 protein (von Willebrand factor type A domain containing protein, expressed),Os11g0687500 protein,Os11g0679000 protein (Fragment),Os06g0578100 protein,Os11g0679400 protein Q2QZH3,Q2QZG7,A0A0P0Y5B3,A0A0P0WY66,A0A0N7KTC6 Q2QZH3_ORYSJ,Q2QZG7_ORYSJ,A0A0P0Y5B3_ORYSJ,A0A0P0WY66_ORYSJ,A0A0N7KTC6_ORYSJ LOC_Os11g45990 Os11g0687100 OSNPB_110687100,Os11g0687500 LOC_Os11g46050 OsJ_34279 OSNPB_110687500,Os11g0679000 OSNPB_110679000,Os06g0578100 OSNPB_060578100,Os11g0679400 OSNPB_110679400 ENOG411DXMJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0287550 protein,Os10g0381800 protein (Fragment),Os03g0614250 protein,Os07g0664100 protein,Os06g0476600 protein,Os10g0157150 protein,Os06g0517150 protein,Os06g0517100 protein A0A0P0Y9G6,A0A0P0XTK9,A0A0P0W056,A0A0P0XA11,A0A0P0WWJ1,A0A0N7KRG5,A0A0N7KM70,A0A0P0WXC7 A0A0P0Y9G6_ORYSJ,A0A0P0XTK9_ORYSJ,A0A0P0W056_ORYSJ,A0A0P0XA11_ORYSJ,A0A0P0WWJ1_ORYSJ,A0A0N7KRG5_ORYSJ,A0A0N7KM70_ORYSJ,A0A0P0WXC7_ORYSJ Os12g0287550 OSNPB_120287550,Os10g0381800 OSNPB_100381800,Os03g0614250 OSNPB_030614250,Os07g0664100 OSNPB_070664100,Os06g0476600 OSNPB_060476600,Os10g0157150 OSNPB_100157150,Os06g0517150 OSNPB_060517150,Os06g0517100 OSNPB_060517100 ENOG411DXMH Q9LUC1,Q8L8P1 Q9LUC1_ARATH,Q8L8P1_ARATH RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At3g14740),RING/FYVE/PHD zinc finger superfamily protein (Similar to zinc-finger protein) R-ATH-114608;R-ATH-3214847; 38995,38739 RING/FYVE/PHD zinc finger superfamily protein (Uncharacterized protein At3g14740),RING/FYVE/PHD zinc finger superfamily protein (Similar to zinc-finger protein) metal ion binding [GO:0046872] locus:2089606; AT3G14740 PHD-finger Os08g0290500 protein (Fragment),Os11g0300650 protein (Fragment) Q0J6N8,A0A0P0Y1L1,A0A0P0XE48,A0A0P0XE78 Q0J6N8_ORYSJ,A0A0P0Y1L1_ORYSJ,A0A0P0XE48_ORYSJ,A0A0P0XE78_ORYSJ Os08g0290500 Os08g0290500 OSNPB_080290500,Os11g0300650 OSNPB_110300650,Os08g0290500 OSNPB_080290500 ENOG411DXMM Q9SF07 Q9SF07_ARATH F26K24.21 protein (Glutaredoxin-like protein) 72577 F26K24.21 protein (Glutaredoxin-like protein) intracellular [GO:0005622]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; intracellular signal transduction [GO:0035556] locus:2081516; AT3G11920 Domain found in Dishevelled Egl-10 and Pleckstrin (DEP) Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed (Os10g0482900 protein) Q8LNW2 Q8LNW2_ORYSJ LOC_Os10g34170 Os10g0482900 OSJNBa0012L23.48 OSNPB_100482900 ENOG411DXMC RH9,RH3,RH53,PMH1,emb1138 Q9LUW6,Q8L7S8,Q9LUW5,A0A1I9LT07,F4K180 RH9_ARATH,RH3_ARATH,RH53_ARATH,A0A1I9LT07_ARATH,F4K180_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 3, chloroplastic (EC 3.6.4.13) (Protein EMBRYO DEFECTIVE 1138),DEAD-box ATP-dependent RNA helicase 53, mitochondrial (EC 3.6.4.13),Putative mitochondrial RNA helicase 1,DEAD box RNA helicase (RH3) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:22576849}. Reduced splicing efficiency of mitochondrial introns. Embryo defective; Globular-D. Meinke-2002 FUNCTION: Nuclear genome-encoded factor involved in ribosome biogenesis in chloroplasts (PubMed:22576849, PubMed:23227895, PubMed:25043599). Binds specific group II introns in chloroplasts and facilitates their splicing. Is required for rRNA maturation in plastids and may contribute to the assembly of the large (50S) ribosomal subunit (PubMed:22576849). Required for normal development of chloroplasts (PubMed:22576849, PubMed:23227895, PubMed:25043599). Required for the expression of transcripts encoding plastid-localized enzymes involved in abscisic acid (ABA) biosynthesis. Required for maintenance of ABA levels and response to salt stress (PubMed:23227895). Possesses RNA chaperone activity for proper splicing of introns in chloroplasts. Essential for chloroplast function and abiotic stress responses (PubMed:25043599). {ECO:0000269|PubMed:22576849, ECO:0000269|PubMed:23227895, ECO:0000269|PubMed:25043599}. MISCELLANEOUS: Plants with the weak allele rh3-4 exhibits albino cotyledons, pale green leaf phenotype, slow growth, short petioles, small leaves, reduced content of chlorophyll, altered structure of chloroplast ribosomes and reduced levels of chloroplast proteins. {ECO:0000269|PubMed:22576849, ECO:0000269|PubMed:23227895, ECO:0000269|PubMed:25043599}. 3.6.4.13 63609,81156,65359,62322,70893 DEAD-box ATP-dependent RNA helicase 9, mitochondrial (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 3, chloroplastic (EC 3.6.4.13) (Protein EMBRYO DEFECTIVE 1138),DEAD-box ATP-dependent RNA helicase 53, mitochondrial (EC 3.6.4.13),Putative mitochondrial RNA helicase 1,DEAD box RNA helicase (RH3) cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; protein complex [GO:0043234]; viral replication complex [GO:0019034]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; DNA binding [GO:0003677]; RNA binding [GO:0003723]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; RNA secondary structure unwinding [GO:0010501]; viral RNA genome replication [GO:0039694],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; chloroplast organization [GO:0009658]; Group II intron splicing [GO:0000373]; response to salt stress [GO:0009651]; ribosome biogenesis [GO:0042254]; RNA secondary structure unwinding [GO:0010501],cell wall [GO:0005618]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; protein complex [GO:0043234]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; Group II intron splicing [GO:0000373]; response to cold [GO:0009409]; RNA secondary structure unwinding [GO:0010501],ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676],nucleus [GO:0005634]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Highly expressed in young seedlings. {ECO:0000269|PubMed:23227895}. locus:2087832;,locus:504955106;,locus:2087852; AT3G22310,AT5G26742,AT3G22330 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 9 (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 3, chloroplastic (EC 3.6.4.13),DEAD-box ATP-dependent RNA helicase 53 (EC 3.6.4.13),Os03g0827700 protein (Fragment),Os07g0143700 protein (Fragment) Q0ILZ4,Q0DM51,Q0D8N0,A0A0P0W5N0,A0A0P0X2G8 RH9_ORYSJ,RH3_ORYSJ,RH53_ORYSJ,A0A0P0W5N0_ORYSJ,A0A0P0X2G8_ORYSJ Os12g0611200 LOC_Os12g41715,Os03g0827700 LOC_Os03g61220 OSJNBa0010E04.4,Os07g0143700 LOC_Os07g05050,Os03g0827700 OSNPB_030827700,Os07g0143700 OSNPB_070143700 FUNCTION: Nuclear genome-encoded factor involved in ribosome biogenesis in chloroplasts. Binds specific group II introns in chloroplasts and facilitates their splicing. Required for normal development of chloroplasts. {ECO:0000250|UniProtKB:A0A1D6LAB7}. ENOG411DXMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Eukaryotic aspartyl protease family protein, expressed (Os11g0215400 protein) Q2R8V2 Q2R8V2_ORYSJ Os11g0215400 LOC_Os11g10910 Os11g0215400 OSNPB_110215400 ENOG411DXMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os11g0213700 protein Q0ITV5 Q0ITV5_ORYSJ Os11g0213700 OSNPB_110213700 ENOG411DXME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein Q0JKN7 Q0JKN7_ORYSJ Os01g0661000 Os01g0661000 OsJ_02900 OSNPB_010661000 ENOG411DXMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os01g0978000 protein Q0JFI8 Q0JFI8_ORYSJ Os01g0978000 Os01g0978000 OSNPB_010978000 ENOG411DXMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA class III peroxidase Peroxidase (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) (Fragment) Q656D4,Q0DCP0 Q656D4_ORYSJ,Q0DCP0_ORYSJ Os06g0490400 Os06g0490400 OsJ_21409 OSNPB_060490400 P0664F03.7,Os06g0306300 Os06g0306300 OSNPB_060306300 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DXMX PSY1R Q9C7S5 PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 (EC 2.7.11.1) (PSY1 receptor) DISRUPTION PHENOTYPE: Loss of sensitivity to PSY1 (PubMed:17989228). Loss of PSY1 induced phosphorylation of AHA2 and reduced hypocotyl elongation (PubMed:25267325). Increased symptom formation, disease index, lesion size and fungal growth after infection with A.brassicicola, but increased resistance to bacterial infection (PubMed:23062058). {ECO:0000269|PubMed:17989228, ECO:0000269|PubMed:23062058, ECO:0000269|PubMed:25267325}. FUNCTION: Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity (PubMed:17989228, PubMed:25267325). Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth (PubMed:17989228). Not involved in PSK perception (PubMed:17989228). Involved in plant immunity, with antagonistic effects on bacterial and fungal resistances (PubMed:23062058). Mediates activation of the plasma membrane H(+)-ATPase by PSY1 (PubMed:25267325). Phosphorylates AHA2 at Thr-881 (PubMed:25267325). {ECO:0000269|PubMed:17989228, ECO:0000269|PubMed:23062058, ECO:0000269|PubMed:25267325}. MISCELLANEOUS: PSYR1 and PSKR1 mediate a signaling pathway by two distinct ligands, which redundantly contribute to cellular proliferation and plant growth. {ECO:0000269|PubMed:17989228}. 2.7.11.1 121521 Tyrosine-sulfated glycopeptide receptor 1 (EC 2.7.11.1) (PSY1 receptor) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; peptide receptor activity [GO:0001653]; protein serine/threonine kinase activity [GO:0004674]; transmembrane signaling receptor activity [GO:0004888]; pH reduction [GO:0045851]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed ubiquitously, including in the shoot apical meristem and in the elongation zone of the root meristem. {ECO:0000269|PubMed:17989228}. locus:2207056; AT1G72300 receptor Os06g0691800 protein (Putative brassinosteroid insensitive 1 protein),Os02g0154000 protein (Putative Phytosulfokine receptor),Os02g0153400 protein (Putative Phytosulfokine receptor),Os02g0153700 protein (Putative Phytosulfokine receptor) (cDNA clone:J023084M06, full insert sequence) Q5Z675,Q67IT1,Q67IT7,Q67IT5 Q5Z675_ORYSJ,Q67IT1_ORYSJ,Q67IT7_ORYSJ,Q67IT5_ORYSJ Os06g0691800 OsJ_22454 OSNPB_060691800 P0532H03.20,Os02g0154000 OsJ_05419 OSJNBb0032C09.7 OSNPB_020154000 P0463E12.25,Os02g0153400 Os02g0153400 OsJ_05415 OSNPB_020153400 P0463E12.17,Os02g0153700 Os02g0153700 OsJ_05417 OSJNBb0032C09.2 OSNPB_020153700 P0463E12.20 ENOG411DXMS MSJ1.9 Q9FMG0,Q8LDF2 Q9FMG0_ARATH,Q8LDF2_ARATH 2-nitropropane dioxygenase-like protein (Aldolase-type TIM barrel family protein) (Putative 2-nitropropane dioxygenase),2-nitropropane dioxygenase-like protein (Aldolase-type TIM barrel family protein) ARA:AT5G64250-MONOMER; 36066,32091 2-nitropropane dioxygenase-like protein (Aldolase-type TIM barrel family protein) (Putative 2-nitropropane dioxygenase),2-nitropropane dioxygenase-like protein (Aldolase-type TIM barrel family protein) cytosol [GO:0005829]; dioxygenase activity [GO:0051213]; nitronate monooxygenase activity [GO:0018580]; response to cadmium ion [GO:0046686]; response to symbiotic fungus [GO:0009610],dioxygenase activity [GO:0051213]; nitronate monooxygenase activity [GO:0018580] locus:2173413; AT5G64250 2-nitropropane dioxygenase 2-nitropropane dioxygenase-related protein-like (Os08g0485400 protein) (cDNA clone:J023114P18, full insert sequence),Os08g0485400 protein Q6YTR9,Q0J4W4 Q6YTR9_ORYSJ,Q0J4W4_ORYSJ P0419H09.34-1 Os08g0485400 P0481F05.4-1 OSNPB_080485400,Os08g0485400 Os08g0485400 OSNPB_080485400 ENOG411DXMR ARP9 Q9LSW2,A0A1P8BF87,A0A1P8BF97 ARP9_ARATH,A0A1P8BF87_ARATH,A0A1P8BF97_ARATH Actin-related protein 9 66470,57362,58726 Actin-related protein 9 Ino80 complex [GO:0031011]; chromatin remodeling [GO:0006338] locus:2176516; AT5G43500 Actin-related protein Actin-related protein 9,Os04g0177600 protein Q0JF03,A0A0P0W719 ARP9_ORYSJ,A0A0P0W719_ORYSJ ARP9 Os04g0177600 LOC_Os04g09860 OsJ_013419 OSJNBa0096F01.9,Os04g0177600 OSNPB_040177600 ENOG411DXMQ OTLD1 F4IFS7,Q9XIP2 F4IFS7_ARATH,Q9XIP2_ARATH OTU-containing deubiquitinating enzyme OTU6 (OTU-like cysteine protease family protein),At2g27350 (At2g27350/F12K2.7) (Expressed protein) (OTU-like cysteine protease family protein) 55276,55274 OTU-containing deubiquitinating enzyme OTU6 (OTU-like cysteine protease family protein),At2g27350 (At2g27350/F12K2.7) (Expressed protein) (OTU-like cysteine protease family protein) chromatin binding [GO:0003682]; histone binding [GO:0042393]; nucleosome binding [GO:0031491]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; histone deubiquitination [GO:0016578]; negative regulation of transcription, DNA-templated [GO:0045892],thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579] locus:2039642; AT2G27350 OTU-like cysteine protease OJ000126_13.12 protein (Os04g0414100 protein),Os04g0414100 protein (Fragment) Q7XVJ6,A0A0P0W9X7 Q7XVJ6_ORYSJ,A0A0P0W9X7_ORYSJ OJ000126_13.12 Os04g0414100 OsJ_14744 OSNPB_040414100,Os04g0414100 OSNPB_040414100 ENOG411DXMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hereditary spastic paraplegia protein strumpellin Os04g0398800 protein (cDNA clone:J013002B23, full insert sequence) Q0JDJ8 Q0JDJ8_ORYSJ Os04g0398800 Os04g0398800 OSNPB_040398800 ENOG411DXMW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor Transcription factor TGAL10 (bZIP transcription factor 64) (OsbZIP64),Os08g0176900 protein (Fragment) Q6ZBS8,A0A0P0XCX2 TGL10_ORYSJ,A0A0P0XCX2_ORYSJ TGAL10 Os08g0176900 LOC_Os08g07970 OJ1120_C08.7 P0583B06.15,Os08g0176900 OSNPB_080176900 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411DXMU A0A1P8BC78,F4K0X5,F4K149,F4K148 A0A1P8BC78_ARATH,F4K0X5_ARATH,F4K149_ARATH,F4K148_ARATH Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein 97981,117521,120745,124676 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein metal ion binding [GO:0046872],plasma membrane [GO:0005886]; metal ion binding [GO:0046872] locus:505006603;,locus:2150305; AT5G12350,AT5G19420 Ran GTPase binding chromatin binding zinc ion binding Os05g0384800 protein,Os01g0952300 protein Q0DIJ3,A0A0P0VD31 Q0DIJ3_ORYSJ,A0A0P0VD31_ORYSJ Os05g0384800 Os05g0384800 OSNPB_050384800,Os01g0952300 OSNPB_010952300 ENOG411DXMT P0C2G6,Q9FJ30,Q9FGQ3 FBL71_ARATH,FBL88_ARATH,FDL37_ARATH Putative F-box/LRR-repeat protein At4g00320,Putative F-box/LRR-repeat protein At5g41840,F-box/FBD/LRR-repeat protein At5g53840 57614,61688,50907 Putative F-box/LRR-repeat protein At4g00320,Putative F-box/LRR-repeat protein At5g41840,F-box/FBD/LRR-repeat protein At5g53840 membrane [GO:0016020] locus:2126096;,locus:2152950;,locus:2157922; AT4G00320,AT5G41840,AT5G53840 F-box FBD LRR-repeat protein Os01g0730200 protein (Fragment) A0A0P0V7U0 A0A0P0V7U0_ORYSJ Os01g0730200 OSNPB_010730200 ENOG411DXM9 F4J3I0 F4J3I0_ARATH Pectin lyase-like superfamily protein 54099 Pectin lyase-like superfamily protein vacuolar membrane [GO:0005774]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975] locus:2076591; AT3G57790 Glycoside hydrolase family 28 protein polygalacturonase (pectinase) family protein Os09g0487600 protein A0A0P0XNS4 A0A0P0XNS4_ORYSJ Os09g0487600 OSNPB_090487600 ENOG411DXM8 Q5Q0D0,F4IF51 Q5Q0D0_ARATH,F4IF51_ARATH Carbohydrate-binding X8 domain superfamily protein 41778,41678 Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:2206355; AT1G79480 X8 domain Os09g0560850 protein A0A0P0XRJ5 A0A0P0XRJ5_ORYSJ Os09g0560850 OSNPB_090560850 ENOG411DXM2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Permease family Os03g0694500 protein (Permease 1, putative, expressed) (cDNA clone:J023144M20, full insert sequence) Q10ET9 Q10ET9_ORYSJ LOC_Os03g48810 Os03g0694500 OsJ_12195 OSNPB_030694500 ENOG411DXM1 AT3,AT6,AT5 Q9FJ74,Q9FJ77,Q9FJ76 WAXS3_ARATH,WAXS6_ARATH,WAXS5_ARATH Probable long-chain-alcohol O-fatty-acyltransferase 3 (EC 2.3.1.75) (Wax synthase 3),Probable long-chain-alcohol O-fatty-acyltransferase 6 (EC 2.3.1.75) (Wax synthase 6),Probable long-chain-alcohol O-fatty-acyltransferase 5 (EC 2.3.1.75) (Wax synthase 5) FUNCTION: Catalyzes the final step in the synthesis of long-chain linear esters (waxes). {ECO:0000250}. ARA:AT5G55360-MONOMER;,ARA:AT5G55330-MONOMER;,ARA:AT5G55340-MONOMER; 2.3.1.75; 2.3.1.75 39408,40395,38036 Probable long-chain-alcohol O-fatty-acyltransferase 3 (EC 2.3.1.75) (Wax synthase 3),Probable long-chain-alcohol O-fatty-acyltransferase 6 (EC 2.3.1.75) (Wax synthase 6),Probable long-chain-alcohol O-fatty-acyltransferase 5 (EC 2.3.1.75) (Wax synthase 5) integral component of membrane [GO:0016021]; arachidoyl-CoA:1-dodecanol O-acyltransferase activity [GO:0102966]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; wax ester synthase activity [GO:0103095]; lipid metabolic process [GO:0006629],integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; arachidoyl-CoA:1-dodecanol O-acyltransferase activity [GO:0102966]; long-chain-alcohol O-fatty-acyltransferase activity [GO:0047196]; wax ester synthase activity [GO:0103095]; lipid metabolic process [GO:0006629] locus:2173932;,locus:2173887;,locus:2173902; AT5G55360,AT5G55330,AT5G55340 long-chain-alcohol O-fatty-acyltransferase Os02g0454500 protein (Putative wax synthase) Q6K3V2 Q6K3V2_ORYSJ Os02g0454500 OSJNBa0008C07.10 OSNPB_020454500 ENOG411DXM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF506) Os03g0162500 protein (cDNA clone:J013000K11, full insert sequence) Q8H7Y9 Q8H7Y9_ORYSJ OJ1607A12.9 LOC_Os03g06680 Os03g0162500 OsJ_09511 OSNPB_030162500 ENOG411DXM7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (No apical meristem) protein NAC domain-containing protein 77 (ONAC077) (NAC domain-containing protein 300) (ONAC300),NAC domain-containing protein 45 (ONAC045),Os11g0127000 protein (Fragment) Q5CD17,Q2RB33,A0A0P0XYU9 NAC77_ORYSJ,NAC45_ORYSJ,A0A0P0XYU9_ORYSJ NAC077 NAC300 Os12g0123800 LOC_Os12g03050 OsJ_35059,NAC45 Os11g0127600 LOC_Os11g03370 OsJ_32787,Os11g0127000 OSNPB_110127000 FUNCTION: Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.,FUNCTION: Transcription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}. ENOG411DXM6 CSN1 P45432,F4JAZ8 CSN1_ARATH,F4JAZ8_ARATH COP9 signalosome complex subunit 1 (CSN complex subunit 1) (Constitutive photomorphogenesis protein 11) (Protein FUSCA 6),COP9 signalosome complex-related / CSN complex-like protein In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,Lacks the intact COP9 signalosome (CSN).,Mutation is lethal in the homozygous state. Seedling lethal; Red seeds and cotyledons due to anthocyanin accumulation; Abnormal growth in the dark; Short roots in response to sugar-D. Meinke-1994 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. In the complex, it plays a central role in CSN assembly. {ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:8689678}. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 50579,42192 COP9 signalosome complex subunit 1 (CSN complex subunit 1) (Constitutive photomorphogenesis protein 11) (Protein FUSCA 6),COP9 signalosome complex-related / CSN complex-like protein COP9 signalosome [GO:0008180]; cytosol [GO:0005829]; embryo development ending in seed dormancy [GO:0009793]; hyperosmotic response [GO:0006972]; protein complex assembly [GO:0006461]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]; response to absence of light [GO:0009646]; response to salt stress [GO:0009651],COP9 signalosome [GO:0008180]; protein deneddylation [GO:0000338] TISSUE SPECIFICITY: Expressed in leaves, flowers, immature siliques, and light-grown roots. locus:2098851;,locus:2087745; AT3G61140,AT3G12850 cop9 signalosome complex subunit COP9 signalosome complex subunit 1, putative, expressed (Os03g0116500 protein) (cDNA clone:J033070E21, full insert sequence) Q10SN3 Q10SN3_ORYSJ LOC_Os03g02540 Os03g0116500 OsJ_09174 OSNPB_030116500 ENOG411DXM4 MUP24.1 Q93W92,A0A1P8BCP9,F4K0E6 Q93W92_ARATH,A0A1P8BCP9_ARATH,F4K0E6_ARATH AT5g60590/muf9_240 (DHBP synthase RibB-like alpha/beta domain-containing protein),DHBP synthase RibB-like alpha/beta domain-containing protein 17940,20308,31303 AT5g60590/muf9_240 (DHBP synthase RibB-like alpha/beta domain-containing protein),DHBP synthase RibB-like alpha/beta domain-containing protein double-stranded RNA binding [GO:0003725],cytoplasm [GO:0005737]; double-stranded RNA binding [GO:0003725]; nucleotidyltransferase activity [GO:0016779]; tRNA binding [GO:0000049]; regulation of translational fidelity [GO:0006450]; tRNA threonylcarbamoyladenosine modification [GO:0002949] locus:2175173; AT5G60590 yrdC domain-containing protein Os03g0201600 protein (YrdC protein, putative, expressed) (cDNA clone:J013119A09, full insert sequence),Os03g0201600 protein (cDNA clone:J013032C08, full insert sequence) Q10QC5,B7EB18 Q10QC5_ORYSJ,B7EB18_ORYSJ Os03g0201600 LOC_Os03g10450 OsJ_09812 OSNPB_030201600,Os03g0201600 OSNPB_030201600 ENOG411E2YZ CASP-like protein 4A3 Q84WP5,Q501G6,A0A1P8AZV7 CSPL8_ARATH,CSPLY_ARATH,A0A1P8AZV7_ARATH CASP-like protein 4A3 (AtCASPL4A3),CASP-like protein 4A2 (AtCASPL4A2),CASP-like protein 31183,32612,24561 CASP-like protein 4A3 (AtCASPL4A3),CASP-like protein 4A2 (AtCASPL4A2),CASP-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2049500;,locus:2170703; AT2G36330,AT5G62820 CASP-like protein NA NA NA NA NA NA NA ENOG411E2YX SUE4 Q8GZ10,Q8L7D8,F4IY46,A0A1P8AZY4 Q8GZ10_ARATH,Q8L7D8_ARATH,F4IY46_ARATH,A0A1P8AZY4_ARATH Alpha/beta hydrolase related protein (At2g40095),Alpha/beta hydrolase related protein (Uncharacterized protein At3g55880),Alpha/beta hydrolase related protein 23295,24234,22089,23361 Alpha/beta hydrolase related protein (At2g40095),Alpha/beta hydrolase related protein (Uncharacterized protein At3g55880),Alpha/beta hydrolase related protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; cellular response to sulfate starvation [GO:0009970] locus:504956035;,locus:2082043; AT2G40095,AT3G55880 Inherit from KOG: hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411E2YY Q0WQ76 Q0WQ76_ARATH Uncharacterized protein At3g24150 38453 Uncharacterized protein At3g24150 locus:2093756; AT3G24150 NA NA NA NA NA NA NA NA ENOG411E2YV Q8LDI1,A0A178V8A7 Q8LDI1_ARATH,A0A178V8A7_ARATH AT3G19900 protein (Uncharacterized protein At3g19900),Uncharacterized protein 25339,19279 AT3G19900 protein (Uncharacterized protein At3g19900),Uncharacterized protein chloroplast [GO:0009507] locus:2092261; AT3G19900 Protein of unknown function (DUF3067) NA NA NA NA NA NA NA ENOG411E2YT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0140900 protein A0A0P0VSX2 A0A0P0VSX2_ORYSJ Os03g0140900 OSNPB_030140900 ENOG411E2YU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os03g0804200 protein (Protease inhibitor/seed storage/LTP family protein) (Putative protease inhibitor) (cDNA, clone: J065097G18, full insert sequence) Q75HK2 Q75HK2_ORYSJ Os03g0804200 LOC_Os03g58940 OsJ_13008 OSJNBb0015I02.3 OSNPB_030804200 ENOG411E2YR GSTU7 Q9ZW24 GSTU7_ARATH Glutathione S-transferase U7 (AtGSTU7) (EC 2.5.1.18) (GST class-tau member 7) (Glutathione S-transferase 25) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT2G29420-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 26113 Glutathione S-transferase U7 (AtGSTU7) (EC 2.5.1.18) (GST class-tau member 7) (Glutathione S-transferase 25) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to salicylic acid [GO:0009751]; toxin catabolic process [GO:0009407] locus:2043112; AT2G29420 glutathione s-transferase NA NA NA NA NA NA NA ENOG411E2YS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alginate lyase Citrate binding protein, putative, expressed (Os12g0170800 protein) (cDNA clone:006-201-D04, full insert sequence) (cDNA clone:006-205-A05, full insert sequence),Os12g0171100 protein Q2QX37,A0A0P0Y7D6 Q2QX37_ORYSJ,A0A0P0Y7D6_ORYSJ Os12g0170800 LOC_Os12g07310 Os12g0170800 OsJ_35373 OSNPB_120170800,Os12g0171100 OSNPB_120171100 ENOG411E2YP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0125100 protein (Fragment) C7J2R7 C7J2R7_ORYSJ Os05g0125100 Os05g0125100 OSNPB_050125100 ENOG411E2YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain Os07g0161100 protein,Os02g0479700 protein,Os10g0388600 protein A0A0P0X2T2,A0A0P0VJ36,A0A0P0XTL3 A0A0P0X2T2_ORYSJ,A0A0P0VJ36_ORYSJ,A0A0P0XTL3_ORYSJ Os07g0161100 OSNPB_070161100,Os02g0479700 OSNPB_020479700,Os10g0388600 OSNPB_100388600 ENOG411E2YM Q9FTA0,Q9FMW4,Q9FMW6,Q9FMW5 GEML4_ARATH,GEML8_ARATH,GEML6_ARATH,GEML7_ARATH GEM-like protein 4,Putative GEM-like protein 8,GEM-like protein 6,GEM-like protein 7 25254,24550,24474,23644 GEM-like protein 4,Putative GEM-like protein 8,GEM-like protein 6,GEM-like protein 7 locus:2150823;,locus:2166806;,locus:2166791; AT5G08350,AT5G23370,AT5G23350,AT5G23360 GEM-like protein NA NA NA NA NA NA NA ENOG411E2YJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411E2YK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent PAP2 family Os05g0548800 protein (Fragment) Q0DG79 Q0DG79_ORYSJ Os05g0548800 Os05g0548800 OSNPB_050548800 ENOG411E2YH KTI2 Q9LMU2 KTI2_ARATH Kunitz trypsin inhibitor 2 (AtKTI2) 22082 Kunitz trypsin inhibitor 2 (AtKTI2) apoplast [GO:0048046]; cell wall [GO:0005618]; endopeptidase inhibitor activity [GO:0004866] locus:2030923; AT1G17860 miraculin-like NA NA NA NA NA NA NA ENOG411E2YI Q9C9I5,A0A1P8ARB4,A0A1P8ARE9 Q9C9I5_ARATH,A0A1P8ARB4_ARATH,A0A1P8ARE9_ARATH AT1G71480 protein (At1g71480) (Nuclear transport factor 2 (NTF2) family protein) (Uncharacterized protein At1g71480) (Uncharacterized protein F26A9.14),Nuclear transport factor 2 (NTF2) family protein 23520,16176,19434 AT1G71480 protein (At1g71480) (Nuclear transport factor 2 (NTF2) family protein) (Uncharacterized protein At1g71480) (Uncharacterized protein F26A9.14),Nuclear transport factor 2 (NTF2) family protein chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; transport [GO:0006810],intracellular [GO:0005622]; transport [GO:0006810] locus:2825304; AT1G71480 SnoaL-like polyketide cyclase Nuclear transport factor 2 (NTF2)-like protein (Os09g0266000 protein) (cDNA clone:006-311-A10, full insert sequence),Nuclear transport factor 2 (NTF2)-like protein (Os09g0266000 protein) (cDNA clone:J013116L09, full insert sequence) Q67TV5,Q67TV4 Q67TV5_ORYSJ,Q67TV4_ORYSJ B1012G11.37-1 Os09g0266000 OSNPB_090266000,B1012G11.37-2 Os09g0266000 OsJ_28594 OSNPB_090266000 ENOG411E2YF ADF11,ADF1,ADF10,ADF7,ADF12,ADF4,ADF8 Q9LZT3,Q39250,Q9LQ81,Q67ZM4,Q8LFH6,Q9ZSK3,Q570Y6,Q6IDB4,A0A1P8B506,A0A1P8AMT9,A0A1P8B6R9,A8MR09 ADF11_ARATH,ADF1_ARATH,ADF10_ARATH,ADF7_ARATH,ADF12_ARATH,ADF4_ARATH,ADF8_ARATH,Q6IDB4_ARATH,A0A1P8B506_ARATH,A0A1P8AMT9_ARATH,A0A1P8B6R9_ARATH,A8MR09_ARATH Putative actin-depolymerizing factor 11 (ADF-11) (AtADF11),Actin-depolymerizing factor 1 (ADF-1) (AtADF1),Actin-depolymerizing factor 10 (ADF-10) (AtADF10),Actin-depolymerizing factor 7 (ADF-7) (AtADF7),Actin-depolymerizing factor 12 (ADF-12) (AtADF12),Actin-depolymerizing factor 4 (ADF-4) (AtADF4),Actin-depolymerizing factor 8 (ADF-8) (AtADF8),At4g00670 (Remorin family protein),Actin depolymerizing factor 8,Actin depolymerizing factor 11,Actin depolymerizing factor 7,Actin depolymerizing factor 1 DISRUPTION PHENOTYPE: Increased length of hypocotyls under dark-grown conditions. {ECO:0000269|PubMed:26345162}.,DISRUPTION PHENOTYPE: Decreased actin filament severing frequency. Increased amount of filamentous actin and inhibition of pollen tube growth. {ECO:0000269|PubMed:24058157}.,DISRUPTION PHENOTYPE: Increased root length under light-grown conditions. Increased length of hypocotyls under dark-grown conditions. Altered architecture of the actin cytoskeleton in hypocotyl cells (PubMed:22010035). Compromised resistance in response to Pseudomonas syringae pv tomato expressing AvrPphB (PubMed:19346440). {ECO:0000269|PubMed:19346440, ECO:0000269|PubMed:22010035}. Susceptible to avirulent bacteria-B. Day-2009 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers. {ECO:0000250|UniProtKB:Q39251}.,FUNCTION: Actin-depolymerizing protein. Stimulates F-actin depolymerization. Involved in plant development, cell organ expansion and flowering by controlling breakdown of thick actin cables (PubMed:11402164). Severs actin filaments or bundles and promotes actin cytoskeleton disassembly (PubMed:21570971). Binds monomeric actin (G-actin) with a marked preference for the ADP-loaded form and inhibits the rate of nucleotide exchange on G-actin (PubMed:17538023). {ECO:0000269|PubMed:11402164, ECO:0000269|PubMed:17538023, ECO:0000269|PubMed:21570971}.,FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers. Binds monomeric actin (G-actin) with a marked preference for the ADP-loaded form and inhibits the rate of nucleotide exchange on G-actin. Required for pollen tube growth. Promotes turnover of longitudinal actin cables by severing actin filaments in pollen tubes. {ECO:0000269|PubMed:24058157}.,FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (PubMed:19346440, PubMed:22010035). Contributes to the stochastic dynamic turnover of actin filaments (PubMed:22010035). Binds monomeric actin (G-actin) with a marked preference for the ADP-loaded form and inhibits the rate of nucleotide exchange on G-actin. Involved in resistance triggered by the effector AvrPphB of Pseudomonas syringae pv tomato (Pst). May modulate the AvrPphB-RPS5-mediated defense signal transduction pathway (PubMed:19346440). During AvrPphB-triggered resistance signaling pathway, involved in the control of MPK3 and MPK6 activaton, via the coordinated regulation of actin cytoskeletal dynamics and RPS5 resistance gene transcription (PubMed:23144618). During innate immune response triggered by the bacterial elf26 peptide, the inhibition of ADF4 regulates actin dynamics in order to execute key events associated with pattern-triggered immunity (PTI), such as cell wall fortification and transcriptional activation of defense gene markers (PubMed:24464292). {ECO:0000269|PubMed:19346440, ECO:0000269|PubMed:22010035, ECO:0000269|PubMed:23144618, ECO:0000269|PubMed:24464292}. Regulation of actin cytoskeleton (04810),Fc gamma R-mediated phagocytosis (04666),Axon guidance (04360),Pertussis (05133) 15904,16113,16342,15820,15884,16034,16317,14089,17354,16886,15217,17340 Putative actin-depolymerizing factor 11 (ADF-11) (AtADF11),Actin-depolymerizing factor 1 (ADF-1) (AtADF1),Actin-depolymerizing factor 10 (ADF-10) (AtADF10),Actin-depolymerizing factor 7 (ADF-7) (AtADF7),Actin-depolymerizing factor 12 (ADF-12) (AtADF12),Actin-depolymerizing factor 4 (ADF-4) (AtADF4),Actin-depolymerizing factor 8 (ADF-8) (AtADF8),At4g00670 (Remorin family protein),Actin depolymerizing factor 8,Actin depolymerizing factor 11,Actin depolymerizing factor 7,Actin depolymerizing factor 1 actin cytoskeleton [GO:0015629]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042],actin filament [GO:0005884]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042],actin filament [GO:0005884]; apoplast [GO:0048046]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042],actin cytoskeleton [GO:0015629]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response to bacterium [GO:0042742],actin cytoskeleton [GO:0015629]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042],actin cytoskeleton [GO:0015629]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042]; actin filament organization [GO:0007015] DEVELOPMENTAL STAGE: During male gametophyte development, expressed at the early microspore stage just after tetrad separation, polarized microspore stage, bicellular stage, mature pollen stage, anthesis stage and open flower stage. Expressed in germinating pollen grains and elongating pollen tubes. {ECO:0000269|PubMed:21632657}.,DEVELOPMENTAL STAGE: During male gametophyte development, expressed at the polarized microspore stage, bicellular stage, mature pollen stage, anthesis stage and open flower stage. Expressed in germinating pollen grains and elongating pollen tubes. {ECO:0000269|PubMed:21632657}. TISSUE SPECIFICITY: Expressed in vascular tissues of all organs. {ECO:0000269|PubMed:11414611}.,TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:21632657}.,TISSUE SPECIFICITY: Expressed in the root trichoblast cells and developed root hairs. {ECO:0000269|PubMed:17933902}. locus:2077092;,locus:2198175;,locus:2131879;,locus:2156727;,locus:2168063;,locus:2127073;,locus:2127058;,locus:2077122; AT3G45990,AT3G46010,AT1G01750,AT4G25590,AT5G52360,AT5G59890,AT4G00680,AT4G00670 actin-depolymerizing factor Actin-depolymerizing factor 6 (ADF-6) (OsADF6),Actin-depolymerizing factor 1 (ADF-1) (OsADF1),Actin-depolymerizing factor 7 (ADF-7) (OsADF7),Os05g0113400 protein (Fragment) Q7XSN9,Q6EUH7,Q0DLA3,A0A0P0WH75 ADF6_ORYSJ,ADF1_ORYSJ,ADF7_ORYSJ,A0A0P0WH75_ORYSJ ADF6 Os04g0555700 LOC_Os04g46910 OSJNBb0012E24.5,ADF1 Os02g0663800 LOC_Os02g44470 OJ1001_D02.29,ADF7 Os05g0113400 LOC_Os05g02250,Os05g0113400 OSNPB_050113400 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (By similarity). {ECO:0000250}. ENOG411E2YG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os02g0679700 protein (cDNA clone:002-140-A08, full insert sequence),Os01g0831800 protein Q6EPP0,A0A0P0V9Z0 Q6EPP0_ORYSJ,A0A0P0V9Z0_ORYSJ Os02g0679700 Os02g0679700 OSNPB_020679700 P0663F07.21,Os01g0831800 OSNPB_010831800 ENOG411E2YD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) NA NA NA NA NA NA NA ENOG411E2YB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 9-1 Q652Q1 GL91_ORYSJ Os09g0568500 LOC_Os09g39510 OJ1003_C09.11 OsJ_029207 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E2YC AGL15 Q38847,A0A1P8BA33 AGL15_ARATH,A0A1P8BA33_ARATH Agamous-like MADS-box protein AGL15,AGAMOUS-like 15 DISRUPTION PHENOTYPE: Early flowering under short-days conditions (SD) when combined with AGL18 disruption. Decreased ability to produce somatic embryos in vitro. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206}. FUNCTION: Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12226488, ECO:0000269|PubMed:12743119, ECO:0000269|PubMed:14615187, ECO:0000269|PubMed:15084721, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19767455, ECO:0000269|PubMed:8953767}. 30329,30684 Agamous-like MADS-box protein AGL15,AGAMOUS-like 15 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein homodimerization activity [GO:0042803]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to auxin stimulus [GO:0071365]; embryo development ending in seed dormancy [GO:0009793]; floral organ abscission [GO:0010227]; fruit abscission [GO:0060867]; fruit dehiscence [GO:0010047]; gibberellin catabolic process [GO:0045487]; negative regulation of floral organ abscission [GO:0060862]; negative regulation of flower development [GO:0009910]; negative regulation of seed maturation [GO:2000692]; negative regulation of short-day photoperiodism, flowering [GO:0048577]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; positive regulation of transcription, DNA-templated [GO:0045893]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During the reproductive phase, accumulates in immature buds and at the base of the floral organs, and in the receptacle, ovules, anther filaments, and stigma and style of open flowers. Accumulates before fertilization in the cytoplasm in the cells of the egg apparatus and moves into the nucleus during early stages of development following fertilization in the suspensor, embryo, and endosperm, mainly double fertilization derived tissues (at protein level). Highly expressed in developing embryos. In young seedlings, present in the shoot and root apices, lateral root primordia and throughout the vascular system. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:8953767}. TISSUE SPECIFICITY: Expressed at low levels in flowers and siliques. Also present in seedlings. Detected during embryogenesis and accumulates during early seed development (at protein level). Expressed in shoot apices and the base of leaf petioles. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:16028119, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:8953767}. locus:2177125; AT5G13790 agamous-like MADS-box protein NA NA NA NA NA NA NA ENOG411E2YA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os10g0431700 protein A0A0P0XV42 A0A0P0XV42_ORYSJ Os10g0431700 OSNPB_100431700 ENOG411E2Y8 GILP Q94CD4 GILP_ARATH GSH-induced LITAF domain protein (AtGILP) FUNCTION: Acts as a membrane anchor, bringing other regulators of programmed cell death (PCD) to the plasma membrane. Negatively regulates hypersensitive cell death. {ECO:0000269|PubMed:21526181}. 14560 GSH-induced LITAF domain protein (AtGILP) plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; negative regulation of plant-type hypersensitive response [GO:0034051] locus:2183891; AT5G13190 LITAF Os02g0515600 protein (cDNA clone:001-020-A03, full insert sequence) Q67UN6 Q67UN6_ORYSJ Os02g0515600 Os02g0515600 OsJ_06906 OSJNBb0071O21.10 OSNPB_020515600 ENOG411E2Y9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Auxin-responsive protein SAUR36 (Protein SMALL AUXIN UP RNA 36) B7F8P5 SAU39_ORYSJ SAUR39 Os09g0545300 LOC_Os09g37330 FUNCTION: Involved in the negative regulation of organ growth. May act as a negative regulator of auxin synthesis and transport. {ECO:0000269|PubMed:19700562}. MISCELLANEOUS: Plants over-expressing SAUR39 display reduced shoot and root growth, altered shoot morphology, reduced size of vascular tissue, low yield and decreased basipetal auxin transport. {ECO:0000269|PubMed:19700562}. ENOG411E2Y6 F4JF18 F4JF18_ARATH Cysteine proteinases superfamily protein 35432 Cysteine proteinases superfamily protein nucleus [GO:0005634]; endopeptidase activity [GO:0004175]; SUMO-specific protease activity [GO:0016929]; protein desumoylation [GO:0016926] locus:2101130; AT3G48480 Ulp1 protease family protein Os11g0214001 protein (Fragment) A0A0P0Y015 A0A0P0Y015_ORYSJ Os11g0214001 OSNPB_110214001 ENOG411E2Y7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) Membrane protein, putative, expressed (Os03g0194600 protein) (cDNA clone:001-107-H03, full insert sequence) Q8H7W6 Q8H7W6_ORYSJ LOC_Os03g09880 Os03g0194600 OSJNBa0064E16.11 OSNPB_030194600 ENOG411E2Y4 Q9M120,Q84VW2,A0A1P8B4E3 Q9M120_ARATH,Q84VW2_ARATH,A0A1P8B4E3_ARATH Polyketide cyclase / dehydrase and lipid transport protein (Uncharacterized protein AT4g01650),At4g01650 (Polyketide cyclase / dehydrase and lipid transport protein) (Uncharacterized protein At4g01650),Polyketide cyclase / dehydrase and lipid transport protein 32618,24179,25242 Polyketide cyclase / dehydrase and lipid transport protein (Uncharacterized protein AT4g01650),At4g01650 (Polyketide cyclase / dehydrase and lipid transport protein) (Uncharacterized protein At4g01650),Polyketide cyclase / dehydrase and lipid transport protein chloroplast [GO:0009507] locus:2133442; AT4G01650 Polyketide cyclase / dehydrase and lipid transport Os01g0971700 protein (cDNA clone:001-024-A06, full insert sequence) (cDNA clone:001-205-F06, full insert sequence) Q5JME4 Q5JME4_ORYSJ Os01g0971700 OSNPB_010971700 P0518C01.16 ENOG411E2Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Holocarboxylase synthetase Os01g0589500 protein (Putative holocarboxylase synthetase) (cDNA clone:001-041-A07, full insert sequence) (cDNA clone:J013027F04, full insert sequence) Q8S268 Q8S268_ORYSJ Os01g0589500 OSNPB_010589500 P0415C01.13 ENOG411E2Y2 HINT1 Q8GUN2 HINT1_ARATH Adenylylsulfatase HINT1 (EC 3.6.2.1) (HIS triad family protein 3) (Histidine triad nucleotide-binding protein 1) FUNCTION: Possesses adenylylsulfatase activity in vitro. {ECO:0000269|PubMed:19896942}. ARA:AT3G56490-MONOMER; 3.6.2.1 16000 Adenylylsulfatase HINT1 (EC 3.6.2.1) (HIS triad family protein 3) (Histidine triad nucleotide-binding protein 1) peroxisome [GO:0005777]; plasma membrane [GO:0005886]; adenylylsulfatase activity [GO:0047627]; nucleotide binding [GO:0000166]; purine ribonucleotide metabolic process [GO:0009150]; sulfur compound metabolic process [GO:0006790] locus:2102554; AT3G56490 14 kDa zinc-binding 14 kDa zinc-binding protein, putative, expressed (Os03g0322500 protein) (cDNA clone:J023050G22, full insert sequence) (cDNA clone:J033131C04, full insert sequence) Q10M57 Q10M57_ORYSJ LOC_Os03g20630 Os03g0322500 OsJ_10663 OSNPB_030322500 ENOG411E2Y3 F4KCH4 F4KCH4_ARATH Topoisomerase I damage affected-like protein 32907 Topoisomerase I damage affected-like protein isomerase activity [GO:0016853] locus:504956336; AT5G08770 NA NA NA NA NA NA NA NA ENOG411E2Y0 O82400 O82400_ARATH Uncharacterized protein At2g22790 36788 Uncharacterized protein At2g22790 locus:2062245; AT2G22790 Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411E01P SGRL Q94AQ9 SGRL_ARATH Protein STAY-GREEN LIKE, chloroplastic FUNCTION: Promotes chlorophyll degradation in leaves. May be involved in LHCI proteins degradation, regulating the balance between LHCI and LHCII (By similarity). {ECO:0000250}. 29892 Protein STAY-GREEN LIKE, chloroplastic chloroplast [GO:0009507]; chloroplast organization [GO:0009658] DEVELOPMENTAL STAGE: Not induced in senescent leaves. {ECO:0000269|Ref.4}. TISSUE SPECIFICITY: Expressed in cotyledons, pollen and young leaves. {ECO:0000269|Ref.4}. locus:2037154; AT1G44000 Inherit from NOG: Senescence-inducible chloroplast stay-green protein Protein STAY-GREEN LIKE, chloroplastic,Os04g0692600 protein (Fragment) Q0J8Q3,A0A0P0WGT4 SGRL_ORYSJ,A0A0P0WGT4_ORYSJ Os04g0692600 LOC_Os04g59610 OsJ_16753 OSJNBb0020J19.16,Os04g0692600 OSNPB_040692600 FUNCTION: Promotes chlorophyll degradation in leaves. May be involved in LHCI proteins degradation, regulating the balance between LHCI and LHCII. {ECO:0000269|PubMed:23816327}. ENOG411E01Q Q8VXZ1,A0A1I9LP71,F4JBD3,A8MRZ2 Q8VXZ1_ARATH,A0A1I9LP71_ARATH,F4JBD3_ARATH,A8MRZ2_ARATH CAAX amino terminal protease family protein (Uncharacterized protein At3g26085),CAAX amino terminal protease family protein 31761,29511,34028,35117 CAAX amino terminal protease family protein (Uncharacterized protein At3g26085),CAAX amino terminal protease family protein integral component of membrane [GO:0016021]; peptidase activity [GO:0008233] locus:505006379; AT3G26085 CAAX protease self-immunity Os05g0295200 protein (Fragment) A0A0P0WK68 A0A0P0WK68_ORYSJ Os05g0295200 OSNPB_050295200 ENOG411E01R RPL5,rpl5 P42793,Q6NMS1 RM05_ARATH,Q6NMS1_ARATH 60S ribosomal protein L5, mitochondrial,At2g07725 (Ribosomal L5P family protein) (Rpl5) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07725) is demonstrated. 21235,21110 60S ribosomal protein L5, mitochondrial,At2g07725 (Ribosomal L5P family protein) (Rpl5) cytosolic large ribosomal subunit [GO:0022625]; mitochondrion [GO:0005739]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],mitochondrion [GO:0005739]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:3437196;locus:504954505; ATMG00210,AT2G07725ATMG00210; 60S ribosomal protein L5 Ribosomal protein L5 Q8HCM6 Q8HCM6_ORYSJ rpl5 ENOG411E01T CP33 Q39061 CP33_ARATH RNA-binding protein CP33, chloroplastic (Protein PIGMENT DEFECTIVE 322) Seedling lethal (inferred from pigment defect)-D. Meinke-2003 FUNCTION: Could be involved in splicing and/or processing of chloroplast RNAs. {ECO:0000305}. 35744 RNA-binding protein CP33, chloroplastic (Protein PIGMENT DEFECTIVE 322) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; intracellular ribonucleoprotein complex [GO:0030529]; thylakoid [GO:0009579]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; chloroplast RNA processing [GO:0031425]; chloroplast rRNA processing [GO:1901259]; mRNA processing [GO:0006397] locus:2079874; AT3G52380 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0158300 protein (Fragment) A0A0P0X2H7 A0A0P0X2H7_ORYSJ Os07g0158300 OSNPB_070158300 ENOG411E01U Q9FH46 Q9FH46_ARATH Signal recognition particle subunit SRP68 (SRP68) FUNCTION: Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. {ECO:0000256|PIRNR:PIRNR038995}. R-ATH-1799339; 68832 Signal recognition particle subunit SRP68 (SRP68) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; endoplasmic reticulum signal peptide binding [GO:0030942]; signal recognition particle binding [GO:0005047]; protein targeting to ER [GO:0045047]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614] locus:2156181; AT5G61970 Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (By similarity) Os08g0323266 protein,Os08g0323000 protein (Fragment) A0A0P0XEL7,A0A0P0XEB1 A0A0P0XEL7_ORYSJ,A0A0P0XEB1_ORYSJ Os08g0323266 OSNPB_080323266,Os08g0323000 OSNPB_080323000 ENOG411E01W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os12g0633501 protein A0A0P0YCS2 A0A0P0YCS2_ORYSJ Os12g0633501 OSNPB_120633501 ENOG411E01X DSP8,MIK19.6 Q9ZQP1,Q6NKR2,F4K7Q7 DSP8_ARATH,Q6NKR2_ARATH,F4K7Q7_ARATH Putative dual specificity protein phosphatase DSP8 (EC 3.1.3.16) (EC 3.1.3.48),At5g56610 (PTP133) (Phosphotyrosine protein phosphatases superfamily protein) (Uncharacterized protein At5g56610),Phosphotyrosine protein phosphatases superfamily protein FUNCTION: May possess phosphatase activity. {ECO:0000250}. ARA:AT2G35680-MONOMER;,ARA:AT5G56610-MONOMER; 3.1.3.16; 3.1.3.48 37548,25726,21221 Putative dual specificity protein phosphatase DSP8 (EC 3.1.3.16) (EC 3.1.3.48),At5g56610 (PTP133) (Phosphotyrosine protein phosphatases superfamily protein) (Uncharacterized protein At5g56610),Phosphotyrosine protein phosphatases superfamily protein phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138],protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138] locus:2058699;,locus:2165016; AT2G35680,AT5G56610 phosphatase Dual specificity phosphatase, catalytic domain containing protein, expressed (Os10g0561900 protein) (cDNA clone:J033116I08, full insert sequence),Os10g0561900 protein (Fragment),Os10g0561900 protein Q7XC53,A0A0P0XX74,A0A0N7KS79 Q7XC53_ORYSJ,A0A0P0XX74_ORYSJ,A0A0N7KS79_ORYSJ OSJNBb0089A17.7 LOC_Os10g41240 Os10g0561900 OsJ_32466 OSNPB_100561900,Os10g0561900 OSNPB_100561900 ENOG411E01Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Carboxypeptidase (EC 3.4.16.-) (Fragment) Q0DRG7 Q0DRG7_ORYSJ Os03g0386800 OSNPB_030386800 ENOG411E01Z Q5EAI9,Q94F54 Q5EAI9_ARATH,Q94F54_ARATH At1g53190 (RING/U-box superfamily protein),At3g15070/K15M2_22 (RING/U-box superfamily protein) 55123,54743 At1g53190 (RING/U-box superfamily protein),At3g15070/K15M2_22 (RING/U-box superfamily protein) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; simple leaf morphogenesis [GO:0060776] locus:2009660;,locus:2086305; AT1G53190,AT3G15070 Zinc finger C3HC4 type (RING finger) Probable E3 ubiquitin-protein ligase ZFP1 (OsZFP1) (EC 2.3.2.27),Os01g0667700 protein (Fragment) Q5QLR5,A0A0P0V6B2 ZFP1_ORYSJ,A0A0P0V6B2_ORYSJ ZFP1 Os01g0667700 LOC_Os01g47740 OsJ_02947 OSJNBb0063G05.28-1 OSJNBb0063G05.28-2,Os01g0667700 OSNPB_010667700 FUNCTION: Probable E3 ubiquitin-protein ligase. {ECO:0000250|UniProtKB:Q6AVN2}. ENOG411E01A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF family protein expressed Os04g0637500 protein (cDNA clone:002-140-D01, full insert sequence) Q0J9P8 Q0J9P8_ORYSJ Os04g0637500 Os04g0637500 OSNPB_040637500 ENOG411E01B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase OSJNBb0059K02.9 protein (Os04g0650200 protein) (cDNA clone:002-147-C12, full insert sequence) (cDNA clone:J023127K09, full insert sequence) Q7XMQ2 Q7XMQ2_ORYSJ Os04g0650200 Os04g0650200 OsJ_16427 OSJNBb0059K02.9 OSNPB_040650200 ENOG411E01C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF599 Os09g0327000 protein A0A0P0XL92 A0A0P0XL92_ORYSJ Os09g0327000 OSNPB_090327000 ENOG411E01D MAC12.8 F4K5E0,F4K5E2 F4K5E0_ARATH,F4K5E2_ARATH Nuclear factor kappa-B-binding protein 104827,106681 Nuclear factor kappa-B-binding protein Ino80 complex [GO:0031011] locus:2159123; AT5G13950 NA Os07g0461600 protein,Os07g0461600 protein (Fragment) Q0D6N3,A0A0P0X5U3 Q0D6N3_ORYSJ,A0A0P0X5U3_ORYSJ Os07g0461600 Os07g0461600 OSNPB_070461600,Os07g0461600 OSNPB_070461600 ENOG411E01E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mediator complex subunit MED14 Os08g0332800 protein (SWP1 protein-like) (cDNA clone:002-183-G12, full insert sequence) Q6YTR0 Q6YTR0_ORYSJ Os08g0332800 Os08g0332800 OJ1224_G08.21 OsJ_26923 OSJNBa0030G18.4 OSNPB_080332800 ENOG411E01F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: HYDIN axonemal central pair apparatus protein NA NA NA NA NA NA NA ENOG411E01G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Os05g0485500 protein (Fragment) Q0DH85 Q0DH85_ORYSJ Os05g0485500 Os05g0485500 OSNPB_050485500 ENOG411E01H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine Carboxypeptidase Carboxypeptidase (EC 3.4.16.-) Q5W6C6,Q5W6C5,Q5W6C3,A0A0P0WJX4 Q5W6C6_ORYSJ,Q5W6C5_ORYSJ,Q5W6C3_ORYSJ,A0A0P0WJX4_ORYSJ Os05g0268500 OSJNBa0037H03.5 OSNPB_050268500,Os05g0268500 OSNPB_050268500 ENOG411E01I Q84VG6 PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525, mitochondrial 70343 Pentatricopeptide repeat-containing protein At2g17525, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:504955997; AT2G17525 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E01J Q84VX5,Q9FWY3,A0A1P8ARE6 Q84VX5_ARATH,Q9FWY3_ARATH,A0A1P8ARE6_ARATH At4g02100 (Heat shock protein DnaJ with tetratricopeptide repeat-containing protein) (Uncharacterized protein At4g02100),T14P4.7 protein (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein 61050,58245,57735 At4g02100 (Heat shock protein DnaJ with tetratricopeptide repeat-containing protein) (Uncharacterized protein At4g02100),T14P4.7 protein (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein locus:2132183;,locus:2196050; AT4G02100,AT1G02650 DNAJ heat shock N-terminal domain-containing protein Os03g0304500 protein (TPR Domain containing protein, expressed) (cDNA clone:J033033G09, full insert sequence),Os07g0689800 protein (cDNA clone:J023086P13, full insert sequence) Q10ML4,Q7F0I0 Q10ML4_ORYSJ,Q7F0I0_ORYSJ Os03g0304500 LOC_Os03g19200 Os03g0304500 OsJ_10545 OSNPB_030304500,P0597G07.116 Os07g0689800 OsJ_25662 OSNPB_070689800 ENOG411E01K Q9SJ03 Q9SJ03_ARATH Expressed protein (Transmembrane protein) (Uncharacterized protein At2g21960) 35806 Expressed protein (Transmembrane protein) (Uncharacterized protein At2g21960) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021] locus:2052474; AT2G21960 NA Os09g0436500 protein,Os04g0639300 protein (Fragment),Os10g0446800 protein (Fragment) Q69LL0,Q0J9P0,A0A0P0XV87,A0A0P0XUQ3,A0A0P0XN08 Q69LL0_ORYSJ,Q0J9P0_ORYSJ,A0A0P0XV87_ORYSJ,A0A0P0XUQ3_ORYSJ,A0A0P0XN08_ORYSJ Os09g0436500 OJ1238_G07.17-1 OJ1328_D07.1-1 OSNPB_090436500,Os04g0639300 Os04g0639300 OSNPB_040639300,Os10g0446800 OSNPB_100446800,Os09g0436500 OSNPB_090436500 ENOG411E01M SKIP23 Q6DR20,Q8GWA9,Q3EBZ2,A0A1P8AYZ6,A0A1P8AZ08 FB110_ARATH,PP157_ARATH,SKI23_ARATH,A0A1P8AYZ6_ARATH,A0A1P8AZ08_ARATH F-box protein At2g17036,Pentatricopeptide repeat-containing protein At2g17033,F-box protein SKIP23 (SKP1-interacting partner 23),F-box SKIP23-like protein (DUF295),Pentatricopeptide (PPR) repeat-containing protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 46810,56527,46228,46679,52720 F-box protein At2g17036,Pentatricopeptide repeat-containing protein At2g17033,F-box protein SKIP23 (SKP1-interacting partner 23),F-box SKIP23-like protein (DUF295),Pentatricopeptide (PPR) repeat-containing protein chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; base-excision repair [GO:0006284]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; base-excision repair [GO:0006284]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724]; protein ubiquitination [GO:0016567] locus:505006249;,locus:2827656; AT2G17036,AT2G17033,AT2G17030 Pentatricopeptide repeat-containing protein Os02g0120000 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J013100B15, full insert sequence) (cDNA clone:J033051C08, full insert sequence) Q6YUS7 Q6YUS7_ORYSJ Os02g0120000 OJ1020_C02.1 OSJNBb0088N06.10 OSNPB_020120000 ENOG411E01N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os10g0402400 protein (Putative anthocyanin 5-aromatic acyltransferase) (Transferase family protein, expressed),Os12g0565450 protein,Os01g0794700 protein,Os03g0402600 protein,Os04g0549000 protein,Os01g0169600 protein Q8LND6,Q2QNH5,A0A0P0V996,A0A0P0VZD3,A0A0N7KJG6,A0A0P0UYJ4 Q8LND6_ORYSJ,Q2QNH5_ORYSJ,A0A0P0V996_ORYSJ,A0A0P0VZD3_ORYSJ,A0A0N7KJG6_ORYSJ,A0A0P0UYJ4_ORYSJ Os10g0402400 LOC_Os10g26290 Os10g0402400 OSJNBa0044A10.13 OSNPB_100402400,Os12g0565450 LOC_Os12g37790 OSNPB_120565450,Os01g0794700 OSNPB_010794700,Os03g0402600 OSNPB_030402600,Os04g0549000 OSNPB_040549000,Os01g0169600 OSNPB_010169600 ENOG411E011 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411E015 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q8H802 Q8H802_ORYSJ Os10g0195000 LOC_Os10g11860 Os10g0195000 OSJNBa0034E15.6 OSNPB_100195000 ENOG411E017 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os09g0268100 protein A0A0P0XK25 A0A0P0XK25_ORYSJ Os09g0268100 OSNPB_090268100 ENOG411E018 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0185966 protein,Os06g0186000 protein (Fragment) A0A0P0WTL7,A0A0P0WTA9 A0A0P0WTL7_ORYSJ,A0A0P0WTA9_ORYSJ Os06g0185966 OSNPB_060185966,Os06g0186000 OSNPB_060186000 ENOG411E019 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Holliday junction DNA helicase ruvB N-terminus Os03g0344700 protein (Fragment) A0A0N7KH90 A0A0N7KH90_ORYSJ Os03g0344700 OSNPB_030344700 ENOG411EH1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH1I Q9SHV0 Q9SHV0_ARATH RING/U-box superfamily protein (Uncharacterized protein At2g15260) 40381 RING/U-box superfamily protein (Uncharacterized protein At2g15260) locus:2049083; AT2G15260 NA NA NA NA NA NA NA NA ENOG411EH1J Q94AQ4 Q94AQ4_ARATH Transmembrane protein (Uncharacterized protein At4g28085) 9226 Transmembrane protein (Uncharacterized protein At4g28085) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:505006528; AT4G28085 NA NA NA NA NA NA NA NA ENOG411EH1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caulimovirus viroplasmin NA NA NA NA NA NA NA ENOG411EH1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EH1N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EH1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tctex-1 family NA NA NA NA NA NA NA ENOG411EH1B CLE16 Q8S8M2 CLE16_ARATH CLAVATA3/ESR (CLE)-related protein 16 [Cleaved into: CLE16p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16902140}. 11756 CLAVATA3/ESR (CLE)-related protein 16 [Cleaved into: CLE16p] extracellular space [GO:0005615]; cell-cell signaling involved in cell fate commitment [GO:0045168]; system development [GO:0048731] TISSUE SPECIFICITY: Expressed in roots, stems, apex, seedlings, leaves, flowers and siliques. {ECO:0000269|PubMed:12602871}. locus:504956026; AT2G01505 clavata3 esr-related 16 NA NA NA NA NA NA NA ENOG411EH1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EH1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH1G O64610,A0A1P8AR89 O64610_ARATH,A0A1P8AR89_ARATH At1g70270 (F17O7.20) (Transcription factor) (Uncharacterized protein At1g70270/F17O7_20),Transcription factor 9888,12332 At1g70270 (F17O7.20) (Transcription factor) (Uncharacterized protein At1g70270/F17O7_20),Transcription factor protein dimerization activity [GO:0046983] locus:2016114; AT1G70270 NA NA NA NA NA NA NA NA ENOG411EH1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Erythromycin esterase NA NA NA NA NA NA NA ENOG411EH1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAS1 NA NA NA NA NA NA NA ENOG411EH1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0248200 protein A0A0P0VH66 A0A0P0VH66_ORYSJ Os02g0248200 OSNPB_020248200 ENOG411EH1P Q8LCF4 Q8LCF4_ARATH At3g48450 (RPM1-interacting protein 4 (RIN4) family protein) 10110 At3g48450 (RPM1-interacting protein 4 (RIN4) family protein) locus:2101185; AT3G48450 Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411EH1R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os06g0618700 protein (cDNA clone:002-121-F03, full insert sequence) Q69XP8 Q69XP8_ORYSJ Os06g0618700 Os06g0618700 OSNPB_060618700 P0012B02.16 ENOG411EH1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIR synthase related protein N-terminal domain NA NA NA NA NA NA NA ENOG411EH11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Shugoshin C terminus NA NA NA NA NA NA NA ENOG411EH15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0495000 protein,Os09g0495300 protein,Os09g0496250 protein A0A0P0XPC6,A0A0N7KR18,A0A0P0XNW3 A0A0P0XPC6_ORYSJ,A0A0N7KR18_ORYSJ,A0A0P0XNW3_ORYSJ Os09g0495000 OSNPB_090495000,Os09g0495300 OSNPB_090495300,Os09g0496250 OSNPB_090496250 ENOG411EIM1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA-3-methyladenine glycosylase NA NA NA NA NA NA NA ENOG411EIM0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retroviral aspartyl protease NA NA NA NA NA NA NA ENOG411EIM4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein NA NA NA NA NA NA NA ENOG411EIM9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase Rpb2 domain 3 NA NA NA NA NA NA NA ENOG411EIMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aldehyde oxidase NA NA NA NA NA NA NA ENOG411EIMF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) NA NA NA NA NA NA NA ENOG411EIMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0417800 protein A0A0P0WMB6 A0A0P0WMB6_ORYSJ Os05g0417800 OSNPB_050417800 ENOG411EIMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIQZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DV0Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os09g0327600 protein (Fragment),Os09g0328951 protein A0A0P0XK54,A0A0P0XM98 A0A0P0XK54_ORYSJ,A0A0P0XM98_ORYSJ Os09g0327600 OSNPB_090327600,Os09g0328951 OSNPB_090328951 ENOG411DV0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Multiple C2 and transmembrane domain-containing protein NA NA NA NA NA NA NA ENOG411DV0V INT1 Q8VZR6 INT1_ARATH Inositol transporter 1 DISRUPTION PHENOTYPE: Reduced root length at low concentrations of myo-inositol. {ECO:0000269|PubMed:18441213}. FUNCTION: Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport. {ECO:0000269|PubMed:18441213}. MISCELLANEOUS: The sorting of INT1 to the tonoplast is independent of the AP-3 adapter complex but is brefeldin A sensitive. R-ATH-429593; 54813 Inositol transporter 1 integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; vacuole [GO:0005773]; myo-inositol:proton symporter activity [GO:0005366]; myo-inositol transport [GO:0015798] TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers and pollen grains. Not detected in seeds. {ECO:0000269|PubMed:18441213}. locus:2058193; AT2G43330 inositol transporter OSJNBa0076N16.21 protein (Os04g0491700 protein) (cDNA clone:J023007N05, full insert sequence) Q7XUE4 Q7XUE4_ORYSJ Os04g0491700 OSJNBa0076N16.21 OSNPB_040491700 ENOG411DV0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pumilio-family RNA binding repeat NA NA NA NA NA NA NA ENOG411DV0T Q8L3X7,A0A1P8AQQ6,A0A1P8AQZ8,F4I0U6 Q8L3X7_ARATH,A0A1P8AQQ6_ARATH,A0A1P8AQZ8_ARATH,F4I0U6_ARATH At1g03250/F15K9_13 (R3H domain protein),R3H domain protein 27720,22157,21127,28487 At1g03250/F15K9_13 (R3H domain protein),R3H domain protein nucleic acid binding [GO:0003676] locus:2014545; AT1G03250 expressed protein Expressed protein (Os12g0144000 protein),Expressed protein (Os11g0147100 protein) (cDNA clone:J033005M04, full insert sequence) Q2QXS9,Q2RAL5 Q2QXS9_ORYSJ,Q2RAL5_ORYSJ Os12g0144000 LOC_Os12g05000 OsJ_35199 OSNPB_120144000,LOC_Os11g04990 Os11g0147100 OsJ_32958 OSNPB_110147100 ENOG411DV0U Q8RY06 Q8RY06_ARATH At2g04305/T23O15.7 (Magnesium transporter CorA-like family protein) 49282 At2g04305/T23O15.7 (Magnesium transporter CorA-like family protein) integral component of membrane [GO:0016021]; membrane [GO:0016020]; metal ion transmembrane transporter activity [GO:0046873]; cation transmembrane transport [GO:0098655] locus:2828240; AT2G04305 CorA-like Mg2+ transporter protein Os08g0130000 protein Q84UR1 Q84UR1_ORYSJ P0582D05.123 Os08g0130000 OSNPB_080130000 ENOG411DV0R O81757 O81757_ARATH At4g33890 (Transcriptional regulator of RNA polII, SAGA, subunit) (Uncharacterized protein AT4g33890) (Uncharacterized protein F17I5.80) 38258 At4g33890 (Transcriptional regulator of RNA polII, SAGA, subunit) (Uncharacterized protein AT4g33890) (Uncharacterized protein F17I5.80) SAGA complex [GO:0000124]; transcription coactivator activity [GO:0003713]; histone H3 acetylation [GO:0043966]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2118944; AT4G33890 NA Expressed protein (Os03g0762700 protein) (cDNA, clone: J080318F13, full insert sequence) Q8W5H4 Q8W5H4_ORYSJ LOC_Os03g55450 Os03g0762700 OsJ_12687 OSJNBa0002J24.12 OSNPB_030762700 ENOG411DV0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC Os02g0254550 protein,Os02g0254500 protein A3A558,A0A0P0VH42 A3A558_ORYSJ,A0A0P0VH42_ORYSJ Os02g0254550 OsJ_06117 OSNPB_020254550,Os02g0254500 OSNPB_020254500 ENOG411DV0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain of PTEN tumour-suppressor protein Formin-like protein 12 (OsFH12),Os04g0245000 protein (Fragment) Q7XWS7,A0A0P0W838 FH12_ORYSJ,A0A0P0W838_ORYSJ FH12 Os04g0244900/Os04g0245000 LOC_Os04g17120/LOC_Os04g17130 OSJNBa0091C12.4 OSJNBa0091C12.5,Os04g0245000 OSNPB_040245000 ENOG411DV0Q SIK1 O24527,Q8VYC1 O24527_ARATH,Q8VYC1_ARATH Protein kinase superfamily protein (Putative serine/threonine kinase; 70789-76610) (Serine/threonine kinase),Protein kinase superfamily protein (Putative serine threonine kinase) 92722,89734 Protein kinase superfamily protein (Putative serine/threonine kinase; 70789-76610) (Serine/threonine kinase),Protein kinase superfamily protein (Putative serine threonine kinase) chromosome [GO:0005694]; chromosome, centromeric region [GO:0000775]; early endosome [GO:0005769]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; Rac GTPase binding [GO:0048365]; actin cytoskeleton organization [GO:0030036]; activation of protein kinase activity [GO:0032147]; cell migration [GO:0016477]; regulation of cell growth [GO:0001558]; regulation of cell proliferation [GO:0042127]; regulation of MAPK cascade [GO:0043408]; regulation of mitotic cell cycle [GO:0007346]; Rho protein signal transduction [GO:0007266]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2026459; AT1G69220 S_TKc Os03g0755000 protein (Serine/threonine kinase, putative, expressed) (cDNA clone:J013155F13, full insert sequence) Q10CN6 Q10CN6_ORYSJ LOC_Os03g54780 Os03g0755000 OSNPB_030755000 ENOG411DV0N F4IJJ8 F4IJJ8_ARATH Alkaline-phosphatase-like family protein R-ATH-162710; 106147 Alkaline-phosphatase-like family protein endoplasmic reticulum [GO:0005783]; integral component of endoplasmic reticulum membrane [GO:0030176]; CP2 mannose-ethanolamine phosphotransferase activity [GO:0051267]; GPI anchor biosynthetic process [GO:0006506] locus:2041248; AT2G22530 GPI ethanolamine phosphate transferase Os02g0781600 protein A0A0P0VQ96 A0A0P0VQ96_ORYSJ Os02g0781600 OSNPB_020781600 ENOG411DV0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os07g0210000 protein (Putative leucine zipper-containing protein),Leucine zipper protein-like protein (Os07g0210675 protein),Os07g0210000 protein (Fragment),Os07g0210900 protein,Os07g0210300 protein Q6Z5V6,Q6Z5U7,A0A0P0X3M9,A0A0P0X3U1,A0A0P0X3L4 Q6Z5V6_ORYSJ,Q6Z5U7_ORYSJ,A0A0P0X3M9_ORYSJ,A0A0P0X3U1_ORYSJ,A0A0P0X3L4_ORYSJ OSJNBa0008C11.22-1 Os07g0210000 OSNPB_070210000,OSJNBa0008C11.31 Os07g0210675 OSNPB_070210675,Os07g0210000 OSNPB_070210000,Os07g0210900 OSNPB_070210900,Os07g0210300 OSNPB_070210300 ENOG411DV0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotidyltransferase domain Expressed protein (Os03g0336700 protein),Os03g0336700 protein (Fragment) Q10LS5,A0A0N7KH82 Q10LS5_ORYSJ,A0A0N7KH82_ORYSJ Os03g0336700 LOC_Os03g21850 Os03g0336700 OSNPB_030336700,Os03g0336700 OSNPB_030336700 ENOG411DV0K KCR1 Q8L9C4 KCR1_ARATH Very-long-chain 3-oxoacyl-CoA reductase 1 (EC 1.1.1.330) (Beta-ketoacyl reductase 1) (AtKCR1) (Protein GLOSSY 8) (gl8At) DISRUPTION PHENOTYPE: Embryo lethal when homozygote. {ECO:0000269|PubMed:19439572}. Embryo defective; Globular-L. Kunst-2009 FUNCTION: Beta-ketoacyl-coenzyme A reductase required for the elongation of fatty acids precursors of sphingolipids, triacylglycerols, cuticular waxes and suberin. Responsible for the first reduction step in very long-chain fatty acids (VLCFAs) synthesis. Decreased expression of KCR1 (RNAi) leads to plants with fused vegetative and reproductive organs, and abnormal trichome, epidermal cell and root morphology. Cannot be complemented by KCR2. {ECO:0000269|PubMed:11792704, ECO:0000269|PubMed:19439572, ECO:0000269|PubMed:9342868}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. {ECO:0000269|PubMed:19439572}. ARA:AT1G67730-MONOMER;MetaCyc:AT1G67730-MONOMER; R-ATH-193048;R-ATH-75876; 1.1.1.330 35762 Very-long-chain 3-oxoacyl-CoA reductase 1 (EC 1.1.1.330) (Beta-ketoacyl reductase 1) (AtKCR1) (Protein GLOSSY 8) (gl8At) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; 3-oxo-arachidoyl-CoA reductase activity [GO:0102339]; 3-oxo-behenoyl-CoA reductase activity [GO:0102340]; 3-oxo-cerotoyl-CoA reductase activity [GO:0102342]; 3-oxo-lignoceroyl-CoA reductase activity [GO:0102341]; acetoacetyl-CoA reductase activity [GO:0018454]; ketoreductase activity [GO:0045703]; embryo development ending in seed dormancy [GO:0009793]; very long-chain fatty acid biosynthetic process [GO:0042761] DEVELOPMENTAL STAGE: Expressed in embryos of different stages and young developing seedlings, but absent from mature seeds. {ECO:0000269|PubMed:19439572}. TISSUE SPECIFICITY: Expressed in green siliques, flowers, inflorescence stems, leaves and roots. {ECO:0000269|PubMed:19439572}. locus:2008630; AT1G67730 Estradiol 17-beta-dehydrogenase NA NA NA NA NA NA NA ENOG411DV0H MQB2.16 Q9FM11,A0A1P8BEB7 Q9FM11_ARATH,A0A1P8BEB7_ARATH Phosphoglycerate mutase family protein 32359,25536 Phosphoglycerate mutase family protein cytosol [GO:0005829]; phosphatase activity [GO:0016791] locus:2170733; AT5G62840 Pfam:PGAM Os01g0660900 protein A0A0P0V643 A0A0P0V643_ORYSJ Os01g0660900 OSNPB_010660900 ENOG411DV0I MKP11.12,MJG14.18 Q9FFI4,A0A1P8BER5,F4K5W3 Q9FFI4_ARATH,A0A1P8BER5_ARATH,F4K5W3_ARATH Protein prenylyltransferase superfamily protein (Similarity to unknown protein),Protein prenylyltransferase superfamily protein 101003,74464,99258 Protein prenylyltransferase superfamily protein (Similarity to unknown protein),Protein prenylyltransferase superfamily protein transferase activity [GO:0016740],apoplast [GO:0048046]; transferase activity [GO:0016740] locus:2167165;,locus:2166153; AT5G17270,AT5G37130 Inherit from KOG: Tetratricopeptide repeat domain 27 Os07g0455100 protein A0A0P0X610 A0A0P0X610_ORYSJ Os07g0455100 OSNPB_070455100 ENOG411DV0G O82314 U082_ARATH Probable transcriptional regulatory protein At2g25830 In heterozygous plants 26% of ovules are aborted compared to 7% of ovules in wild type siblings. 36814 Probable transcriptional regulatory protein At2g25830 chloroplast [GO:0009507] locus:2043480; AT2G25830 Pfam:DUF28 Os05g0519800 protein (cDNA clone:J023024L22, full insert sequence) Q6F2Z2 Q6F2Z2_ORYSJ Os05g0519800 Os05g0519800 OsJ_19233 OSNPB_050519800 P0483D07.4 P0599F04.14 ENOG411DV0D OEP24B,OEP24A Q8H0Y1,Q1H5C9 OP24B_ARATH,OP24A_ARATH Outer envelope pore protein 24B, chloroplastic (Chloroplastic outer envelope pore protein of 24 kDa B),Outer envelope pore protein 24A, chloroplastic (Chloroplastic outer envelope pore protein of 24 kDa A) FUNCTION: High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids. {ECO:0000250}. 23411,23591 Outer envelope pore protein 24B, chloroplastic (Chloroplastic outer envelope pore protein of 24 kDa B),Outer envelope pore protein 24A, chloroplastic (Chloroplastic outer envelope pore protein of 24 kDa A) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; etioplast membrane [GO:0034426]; integral component of chloroplast outer membrane [GO:0031359]; mitochondrion [GO:0005739]; plastid [GO:0009536]; pore complex [GO:0046930]; porin activity [GO:0015288]; voltage-gated cation channel activity [GO:0022843]; regulation of ion transmembrane transport [GO:0034765],etioplast membrane [GO:0034426]; integral component of chloroplast outer membrane [GO:0031359]; plastid [GO:0009536]; pore complex [GO:0046930]; porin activity [GO:0015288]; voltage-gated cation channel activity [GO:0022843]; regulation of ion transmembrane transport [GO:0034765] locus:2160051;,locus:2028210; AT5G42960,AT1G45170 High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates dicarboxylic acids ATP inorganic phosphate (Pi) sugars and positively or negatively charged amino acids (By similarity) Outer envelope pore protein 24, chloroplastic (Chloroplastic outer envelope pore protein of 24 kDa) Q75IQ4 OEP24_ORYSJ OEP24 Os03g0855600 LOC_Os03g63860 OsJ_13425 FUNCTION: High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids. {ECO:0000250}. ENOG411DV0E YLMG2 Q9C595,F4K8C4 YLMG2_ARATH,F4K8C4_ARATH YlmG homolog protein 2, chloroplastic (AtYLMG2) (YGGT family protein YLMG2),YGGT family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18593701}. FUNCTION: Not required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Not functionally involved in the pathway for covalent binding of the c-type heme to cytochrome b6. {ECO:0000269|PubMed:18593701}. 27266,18609 YlmG homolog protein 2, chloroplastic (AtYLMG2) (YGGT family protein YLMG2),YGGT family protein chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:504956451; AT5G21920 YGGT family Os03g0178200 protein (YGGT family protein, expressed) (cDNA clone:001-206-C08, full insert sequence) (cDNA clone:001-208-H08, full insert sequence) (cDNA clone:006-302-E12, full insert sequence) (cDNA clone:J023110G09, full insert sequence) Q10QZ1 Q10QZ1_ORYSJ Os03g0178200 LOC_Os03g08080 Os03g0178200 OsJ_09637 OSNPB_030178200 ENOG411DV0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nucleoporin Os01g0620100 protein (SEC13 protein homolog YGL100w-like) (cDNA clone:J023044A10, full insert sequence) Q5ZBF5 Q5ZBF5_ORYSJ Os01g0620100 B1040D09.39 OsJ_02639 OSNPB_010620100 P0407B12.24 ENOG411DV0C NPU Q8L776 Q8L776_ARATH ATP-dependent helicase/deoxyribonuclease subunit B (At3g51610) (Uncharacterized protein At3g51610) 26070 ATP-dependent helicase/deoxyribonuclease subunit B (At3g51610) (Uncharacterized protein At3g51610) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; helicase activity [GO:0004386]; pollen development [GO:0009555]; response to oxidative stress [GO:0006979] locus:2081870; AT3G51610 NA Os05g0168400 protein (cDNA clone:001-208-E08, full insert sequence) (cDNA clone:J023027O05, full insert sequence) Q60DU1 Q60DU1_ORYSJ Os05g0168400 OsJ_17268 OSJNBa0086E02.14 OSNPB_050168400 ENOG411DV0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alba Os09g0542000 protein (cDNA clone:J033084H19, full insert sequence) Q651C3 Q651C3_ORYSJ Os09g0542000 B1274F11.41 OSNPB_090542000 ENOG411DV08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA START NA NA NA NA NA NA NA ENOG411DV09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os10g0375700 protein (Fragment) Q0IY30 Q0IY30_ORYSJ Os10g0375700 OSNPB_100375700 ENOG411DV06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: B double prime 1 subunit of RNA polymerase III transcription initiation factor IIIB Os03g0840500 protein (Fragment) A0A0P0W679 A0A0P0W679_ORYSJ Os03g0840500 OSNPB_030840500 ENOG411DV07 Q6NKZ9 Y4345_ARATH Probable receptor-like serine/threonine-protein kinase At4g34500 (EC 2.7.11.1) 2.7.11.1 47985 Probable receptor-like serine/threonine-protein kinase At4g34500 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2139559; AT4G34500 serine threonine-protein kinase Os03g0227900 protein Q0DTS5 Q0DTS5_ORYSJ Os03g0227900 Os03g0227900 OSNPB_030227900 ENOG411DV04 MBM17.3 O49318,Q9LVP0,Q9SHI2,A0A1P8BH07,A0A1P8AVC9,A0A1P8AVG7 Y2317_ARATH,Y5639_ARATH,Y1723_ARATH,A0A1P8BH07_ARATH,A0A1P8AVC9_ARATH,A0A1P8AVG7_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 (EC 2.7.11.1),Probable leucine-rich repeat receptor-like protein kinase At5g63930 (EC 2.7.11.1),Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein,Leucine-rich receptor-like protein kinase family protein 2.7.11.1 123723,120477,122100,113233,107846,125837 Probable leucine-rich repeat receptor-like protein kinase At2g33170 (EC 2.7.11.1),Probable leucine-rich repeat receptor-like protein kinase At5g63930 (EC 2.7.11.1),Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein,Leucine-rich receptor-like protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2046525;,locus:2160791;,locus:2020417; AT2G33170,AT5G63930,AT1G17230 Leucine-rich repeat receptor-like protein kinase Os04g0506100 protein (Fragment),Os07g0152200 protein (Putative LRR receptor-like kinase) (cDNA, clone: J090052O12, full insert sequence) Q0JBW6,Q6YT77 Q0JBW6_ORYSJ,Q6YT77_ORYSJ Os04g0506100 Os04g0506100 OSNPB_040506100,Os07g0152200 B1364A02.24 OSNPB_070152200 ENOG411DV05 CKX7 Q9FUJ1 CKX7_ARATH Cytokinin dehydrogenase 7 (EC 1.5.99.12) (Cytokinin oxidase 7) (AtCKX5) (AtCKX7) (CKO7) FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000250}. ARA:AT5G21482-MONOMER; 1.5.99.12; 1.5.99.12 57976 Cytokinin dehydrogenase 7 (EC 1.5.99.12) (Cytokinin oxidase 7) (AtCKX5) (AtCKX7) (CKO7) cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cytokinin catabolic process [GO:0009823] locus:1005716173; AT5G21482 cytokinin dehydrogenase Cytokinin dehydrogenase 11 (EC 1.5.99.12) (Cytokinin oxidase 11) (OsCKX11),Os08g0460600 protein Q6Z955,A0A0P0XGN1 CKX11_ORYSJ,A0A0P0XGN1_ORYSJ CKX11 Os08g0460600 LOC_Os08g35860 P0690E03.23,Os08g0460600 OSNPB_080460600 FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000250}. ENOG411DV02 UBQ14,UBQ9,UBQ11,UBQ4,UBQ10,UBQ8,UBQ12,UBQ3,F15I1.4,F15I1.1,F15I1.3,F15I1.6,UBQ13 Q3E7T8,Q9FHQ6,P0CH33,P0CH32,Q8H159,Q39256,Q3E7K8,Q1EC66,Q9SYF2,F4JGM3,Q9FY81,Q9SYE9,Q3EAA5,Q9SYF1,Q9SYF4,F4I9X6,A0A1P8BGQ7 UBQ14_ARATH,UBQ9_ARATH,UBQ11_ARATH,UBQ4_ARATH,UBQ10_ARATH,UBQ8_ARATH,UBQ12_ARATH,UBQ3_ARATH,Q9SYF2_ARATH,F4JGM3_ARATH,Q9FY81_ARATH,Q9SYE9_ARATH,Q3EAA5_ARATH,Q9SYF1_ARATH,Q9SYF4_ARATH,F4I9X6_ARATH,A0A1P8BGQ7_ARATH Polyubiquitin 14 [Cleaved into: Ubiquitin],Polyubiquitin 9 [Cleaved into: Ubiquitin-related 1; Ubiquitin-related 2; Ubiquitin-related 3; Ubiquitin-related 4],Polyubiquitin 11 [Cleaved into: Ubiquitin],Polyubiquitin 4 [Cleaved into: Ubiquitin],Polyubiquitin 10 [Cleaved into: Ubiquitin],Polyubiquitin 8 [Cleaved into: Ubiquitin-related 1; Ubiquitin-related 2; Ubiquitin-related 3; Ubiquitin-related 4; Ubiquitin-related 5; Ubiquitin-related 6; Ubiquitin-related 7; Ubiquitin-related 8],Polyubiquitin 12 [Cleaved into: Ubiquitin-related 1; Ubiquitin-related 2; Ubiquitin-related 3],Polyubiquitin 3 [Cleaved into: Ubiquitin],F15I1.4 protein (Ubiquitin-40S ribosomal S27a-like protein) (Uncharacterized protein At1g53960/F15I1_4),Polyubiquitin (Polyubiquitin 10) (Ubiquitin 11),Ubiquitin family protein (Ubiquitin-like protein),F15I1.1 protein (Ubiquitin family protein) (Ubiquitin-like superfamily protein),AT4g05320/C17L7_240 (Polyubiquitin 10),F15I1.3 protein (Polyubiquitin-like protein),F15I1.6 protein (Ubiquitin-like superfamily protein),Ubiquitin 13,Ubiquitin 4 FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}. MISCELLANEOUS: Ubiquitin is encoded by 16 different genes. Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to a ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin.; MISCELLANEOUS: For the sake of clarity sequence features are annotated only for the first chain, and are not repeated for each of the following chains.,MISCELLANEOUS: Ubiquitin is encoded by 16 different genes. Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to a ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. R-ATH-110312;R-ATH-110314;R-ATH-110320;R-ATH-156827;R-ATH-174184;R-ATH-1799339;R-ATH-349425;R-ATH-382556;R-ATH-446652;R-ATH-4641258;R-ATH-532668;R-ATH-5358346;R-ATH-5632684;R-ATH-5655862;R-ATH-5656121;R-ATH-5656169;R-ATH-5689603;R-ATH-5689877;R-ATH-5689880;R-ATH-5689901;R-ATH-5693565;R-ATH-5696394;R-ATH-5696395;R-ATH-5696397;R-ATH-5696400;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-68949;R-ATH-69017;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-8866652;R-ATH-8866654;R-ATH-901032;R-ATH-917729;R-ATH-975956;R-ATH-975957;R-ATH-983168; 34192,36257,25685,42786,51206,71769,25843,34279,16575,17179,9085,17851,42699,13317,10142,35398 Polyubiquitin 14 [Cleaved into: Ubiquitin],Polyubiquitin 9 [Cleaved into: Ubiquitin-related 1; Ubiquitin-related 2; Ubiquitin-related 3; Ubiquitin-related 4],Polyubiquitin 11 [Cleaved into: Ubiquitin],Polyubiquitin 4 [Cleaved into: Ubiquitin],Polyubiquitin 10 [Cleaved into: Ubiquitin],Polyubiquitin 8 [Cleaved into: Ubiquitin-related 1; Ubiquitin-related 2; Ubiquitin-related 3; Ubiquitin-related 4; Ubiquitin-related 5; Ubiquitin-related 6; Ubiquitin-related 7; Ubiquitin-related 8],Polyubiquitin 12 [Cleaved into: Ubiquitin-related 1; Ubiquitin-related 2; Ubiquitin-related 3],Polyubiquitin 3 [Cleaved into: Ubiquitin],F15I1.4 protein (Ubiquitin-40S ribosomal S27a-like protein) (Uncharacterized protein At1g53960/F15I1_4),Polyubiquitin (Polyubiquitin 10) (Ubiquitin 11),Ubiquitin family protein (Ubiquitin-like protein),F15I1.1 protein (Ubiquitin family protein) (Ubiquitin-like superfamily protein),AT4g05320/C17L7_240 (Polyubiquitin 10),F15I1.3 protein (Polyubiquitin-like protein),F15I1.6 protein (Ubiquitin-like superfamily protein),Ubiquitin 13,Ubiquitin 4 nucleus [GO:0005634]; vacuole [GO:0005773]; ubiquitin-dependent protein catabolic process [GO:0006511],cell wall [GO:0005618]; nucleolus [GO:0005730]; vacuolar membrane [GO:0005774]; response to cytokinin [GO:0009735]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634]; cellular protein modification process [GO:0006464]; response to salicylic acid [GO:0009751],cell wall [GO:0005618]; nucleus [GO:0005634]; vacuole [GO:0005773]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; vacuole [GO:0005773]; response to UV-B [GO:0010224]; ubiquitin-dependent protein catabolic process [GO:0006511],ubiquitin-dependent protein catabolic process [GO:0006511] locus:2140200;,locus:2151774;,locus:2138386;,locus:2180434;,locus:2115663;,locus:2074909;,locus:2827139;,locus:2143548;,locus:2014415;,locus:2184762;,locus:2014440;,locus:2014435;,locus:2206310; AT4G02890,AT5G37640,AT4G05050,AT5G20620,AT4G05320,AT3G09790,AT1G55060,AT5G03240,AT1G53950,AT5G09340,AT1G53930,AT1G53980,AT1G65350 polyubiquitin Polyubiquitin 3 [Cleaved into: Ubiquitin-related; Ubiquitin],Os07g0492200 protein,Os04g0628100 protein,Os02g0161900 protein (Fragment),Os03g0259600 protein (Fragment),Os06g0673500 protein (Fragment),Os06g0681400 protein (Fragment),Os10g0491500 protein Q58G87,Q8LHU6,Q0J9W6,A0A0P0VF30,A0A0P0VVN4,A0A0P0X0E0,A0A0P0X005,A0A0P0XW22 UBQ3_ORYSJ,Q8LHU6_ORYSJ,Q0J9W6_ORYSJ,A0A0P0VF30_ORYSJ,A0A0P0VVN4_ORYSJ,A0A0P0X0E0_ORYSJ,A0A0P0X005_ORYSJ,A0A0P0XW22_ORYSJ UBQ3 RUBI3 Os04g0628100 LOC_Os04g53620 OsJ_16259 OSJNBa0089N06.4,P0038F10.107 Os07g0492200 OJ1218_C12.27 OsJ_24305 OSNPB_070492200,Os04g0628100 Os04g0628100 OSNPB_040628100,Os02g0161900 OSNPB_020161900,Os03g0259600 OSNPB_030259600,Os06g0673500 OSNPB_060673500,Os06g0681400 OSNPB_060681400,Os10g0491500 OSNPB_100491500 FUNCTION: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}. MISCELLANEOUS: Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to an ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin.; MISCELLANEOUS: For the sake of clarity sequence features are annotated only for the first chain, and are not repeated for each of the following chains. ENOG411DV03 Q9C576 Q9C576_ARATH At5g22100 (At5g22100/At5g22100) (Coiled-coil protein) (Uncharacterized protein At5g22120) 42092 At5g22100 (At5g22100/At5g22100) (Coiled-coil protein) (Uncharacterized protein At5g22120) exon-exon junction complex [GO:0035145]; nucleic acid binding [GO:0003676] locus:504956458; AT5G22120 Inherit from KOG: R3H domain and coiled-coil containing Os01g0965600 protein (cDNA clone:J033042I24, full insert sequence) Q5JJV8 Q5JJV8_ORYSJ Os01g0965600 OSNPB_010965600 P0458E05.19 ENOG411DV00 ABCG22 Q93YS4,A0A1P8BAZ0 AB22G_ARATH,A0A1P8BAZ0_ARATH ABC transporter G family member 22 (ABC transporter ABCG.22) (AtABCG22) (White-brown complex homolog protein 23) (AtWBC23),ABC-2 type transporter family protein 82931,55333 ABC transporter G family member 22 (ABC transporter ABCG.22) (AtABCG22) (White-brown complex homolog protein 23) (AtWBC23),ABC-2 type transporter family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; response to water deprivation [GO:0009414]; transpiration [GO:0010148],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] locus:2144133; AT5G06530 ABC transporter ABC transporter family protein, putative, expressed (Os03g0157400 protein),Os03g0157400 protein (Fragment) Q10RJ4,A0A0P0VT91 Q10RJ4_ORYSJ,A0A0P0VT91_ORYSJ LOC_Os03g06139 Os03g0157400 OSNPB_030157400,Os03g0157400 OSNPB_030157400 ENOG411DV01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411DPXR Q9FHE2 Q9FHE2_ARATH Chloroplast nucleoid DNA-binding protein-like (Eukaryotic aspartyl protease family protein) 53748 Chloroplast nucleoid DNA-binding protein-like (Eukaryotic aspartyl protease family protein) aspartic-type endopeptidase activity [GO:0004190]; DNA binding [GO:0003677]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2153197; AT5G45120 Eukaryotic aspartyl protease Os05g0511050 protein B9FKJ7 B9FKJ7_ORYSJ Os05g0511050 Os05g0511050 OsJ_19161 OSNPB_050511050 ENOG411DPXT PUP4 Q9SY29 PUP4_ARATH Probable purine permease 4 (AtPUP4) 42321 Probable purine permease 4 (AtPUP4) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863] locus:2196989; AT1G30840 purine permease Os05g0556800 protein (cDNA clone:002-149-E01, full insert sequence),Os01g0680200 protein (Purine permease-like protein) (cDNA clone:J033104L22, full insert sequence) Q6I609,Q5QLF2 Q6I609_ORYSJ,Q5QLF2_ORYSJ Os05g0556800 OJ1214_E03.10 OSNPB_050556800,Os01g0680200 Os01g0680200 B1144G04.48 OSNPB_010680200 P0019E03.3 ENOG411DPXU MGI19.3 Q9FN06 Q9FN06_ARATH HIT-type Zinc finger family protein 45509 HIT-type Zinc finger family protein metal ion binding [GO:0046872] locus:2163971; AT5G63830 Zinc finger HIT domain-containing protein HIT zinc finger family protein, expressed (Os10g0520700 protein) Q337A7 Q337A7_ORYSJ LOC_Os10g37640 Os10g0520700 OSNPB_100520700 ENOG411DPXV FAD7,FAD8 P46310,P48622,F4K0R2 FAD3C_ARATH,FAD3D_ARATH,F4K0R2_ARATH sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic (EC 1.14.19.35) (Omega-3 fatty acid desaturase 7, chloroplastic),Temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic (EC 1.14.19.35) (Temperature-sensitive omega-3 fatty acid desaturase 8, chloroplastic),Fatty acid desaturase 8 Decreased dienoic fatty acid desaturation in chloroplast lipids -C. Somerville-1993,Low trienoic acid levels-C. Somerville-1994 FUNCTION: Chloroplast omega-3 fatty acid desaturase introduces the third double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol. {ECO:0000269|PubMed:8226956}.,FUNCTION: Chloroplast omega-3 fatty acid desaturase introduces the third double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol. {ECO:0000269|PubMed:7846164}. PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. {ECO:0000269|PubMed:8226956}.,PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. {ECO:0000269|PubMed:7846164}. ARA:AT3G11170-MONOMER;MetaCyc:AT3G11170-MONOMER;,ARA:AT5G05580-MONOMER;MetaCyc:AT5G05580-MONOMER; 1.14.19.35 51174,50136,44355 sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic (EC 1.14.19.35) (Omega-3 fatty acid desaturase 7, chloroplastic),Temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic (EC 1.14.19.35) (Temperature-sensitive omega-3 fatty acid desaturase 8, chloroplastic),Fatty acid desaturase 8 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid membrane [GO:0042170]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; unsaturated fatty acid biosynthetic process [GO:0006636],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; omega-3 fatty acid desaturase activity [GO:0042389]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; fatty acid biosynthetic process [GO:0006633]; unsaturated fatty acid biosynthetic process [GO:0006636],integral component of membrane [GO:0016021]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Most abundant in leaves and seedlings. {ECO:0000269|PubMed:8226956}. locus:2074628;,locus:2169677; AT3G11170,AT5G05580 Omega-3 fatty acid desaturase Os07g0693800 protein (Putative omega-3 fatty acid desaturase),Os03g0290300 protein (Fragment),FAD8 (Os07g0693800 protein) (Plastid omega-3 fatty acid desaturase) (Putative omega-3 fatty acid desaturase) (cDNA clone:006-310-E06, full insert sequence) (cDNA clone:J013025C20, full insert sequence) Q7XI61,Q0DSS9,Q84NP3 Q7XI61_ORYSJ,Q0DSS9_ORYSJ,Q84NP3_ORYSJ P0034A04.134-2 Os07g0693800 P0627E10.1-2 OSNPB_070693800,Os03g0290300 OSNPB_030290300,P0034A04.134-1 OsFAD8 P0627E10.1-1 Os07g0693800 OsJ_25696 OSNPB_070693800 ENOG411DPXX AIL7,AIL6 Q6J9N8,Q52QU2,A0A1P8BDC1,F4KGW7,A0A1P8BA85,F4KGW9,A0A1P8BA69 AIL7_ARATH,AIL6_ARATH,A0A1P8BDC1_ARATH,F4KGW7_ARATH,A0A1P8BA85_ARATH,F4KGW9_ARATH,A0A1P8BA69_ARATH AP2-like ethylene-responsive transcription factor AIL7 (Protein AINTEGUMENTA-LIKE 7),AP2-like ethylene-responsive transcription factor AIL6 (Protein AINTEGUMENTA-LIKE 6),AINTEGUMENTA-like 6,AINTEGUMENTA-like 7 Short roots and shortened root meristem.,Rootless.Embryonic root differentiates 3 days after germination. Adventitious roots arrest 6 days after germination. FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 55448,64966,61289,67693,34656,63632,49046 AP2-like ethylene-responsive transcription factor AIL7 (Protein AINTEGUMENTA-LIKE 7),AP2-like ethylene-responsive transcription factor AIL6 (Protein AINTEGUMENTA-LIKE 6),AINTEGUMENTA-like 6,AINTEGUMENTA-like 7 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin mediated signaling pathway involved in phyllotactic patterning [GO:0060774]; ethylene-activated signaling pathway [GO:0009873]; leaf phyllotactic patterning [GO:0060772]; maintenance of shoot apical meristem identity [GO:0010492]; phyllotactic patterning [GO:0060771]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; auxin mediated signaling pathway involved in phyllotactic patterning [GO:0060774]; flower development [GO:0009908]; leaf phyllotactic patterning [GO:0060772]; maintenance of shoot apical meristem identity [GO:0010492]; organ growth [GO:0035265]; phyllotactic patterning [GO:0060771]; regulation of floral meristem growth [GO:0010080]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Confined to the central region of inflorescence ane floral meristems, progressively restricted to the innermost cells of the dome. Also detected in developing stamen locules and later in sporogonous cells within locules. In carpel primordia, found in placenta and in young ovule primordia. {ECO:0000269|PubMed:15988559}.,DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.,TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. locus:2155680;,locus:2142534; AT5G65510,AT5G10510 Transcription factor NA NA NA NA NA NA NA ENOG411DPXY F8M12.23 Q8RX01,O81632,A0A1P8B5U8 Y3567_ARATH,O81632_ARATH,A0A1P8B5U8_ARATH BTB/POZ domain-containing protein At3g05675,BTB/POZ domain protein (F8M12.23 protein) (Uncharacterized protein At4g10800) (Uncharacterized protein F25I24.10),BTB/POZ domain protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 50268,32230,29670 BTB/POZ domain-containing protein At3g05675,BTB/POZ domain protein (F8M12.23 protein) (Uncharacterized protein At4g10800) (Uncharacterized protein F25I24.10),BTB/POZ domain protein protein ubiquitination [GO:0016567] locus:505006330;,locus:2123366; AT3G05675,AT4G10800 BTB POZ domain-containing protein At3g05675-like Os06g0129200 protein (cDNA clone:J033093J06, full insert sequence),Os07g0668800 protein (cDNA clone:001-100-G09, full insert sequence) (cDNA clone:001-117-D12, full insert sequence) (cDNA clone:J033125A06, full insert sequence),Os06g0129200 protein (Fragment) Q9SNT6,Q8H3R1,A0A0P0WS17 Q9SNT6_ORYSJ,Q8H3R1_ORYSJ,A0A0P0WS17_ORYSJ Os06g0129200 OsJ_19980 OSNPB_060129200 P0538C01.14,P0625E02.114 Os07g0668800 OSNPB_070668800,Os06g0129200 OSNPB_060129200 ENOG411DPXZ Q8GWJ8 Q8GWJ8_ARATH Homeobox prospero protein (Uncharacterized protein At5g58920) (Uncharacterized protein At5g58920/k19m22_120) 18874 Homeobox prospero protein (Uncharacterized protein At5g58920) (Uncharacterized protein At5g58920/k19m22_120) DNA binding [GO:0003677] locus:2154533; AT5G58920 NA Os01g0362000 protein (Fragment) A0A0P0V314 A0A0P0V314_ORYSJ Os01g0362000 OSNPB_010362000 ENOG411DPXB Q944A3,Q8GWU4,A0A1P8B1M4,F4JKV3 Q944A3_ARATH,Q8GWU4_ARATH,A0A1P8B1M4_ARATH,F4JKV3_ARATH At2g47010/F14M4.16 (Calcium/calcium/calmodulin-dependent Serine/Threonine-kinase),Uncharacterized protein At1g17030/F20D23_27,Calcium/calcium/calmodulin-dependent Serine/Threonine-kinase,Uncharacterized protein 55050,56781,50858,25659 At2g47010/F14M4.16 (Calcium/calcium/calmodulin-dependent Serine/Threonine-kinase),Uncharacterized protein At1g17030/F20D23_27,Calcium/calcium/calmodulin-dependent Serine/Threonine-kinase,Uncharacterized protein kinase activity [GO:0016301] locus:2041419;,locus:2020397;,locus:504955241; AT2G47010,AT1G17030,AT4G09965 NA Os05g0272800 protein (cDNA clone:J013170M23, full insert sequence),Os05g0272200 protein Q6ATF9,A0A0P0WK33 Q6ATF9_ORYSJ,A0A0P0WK33_ORYSJ Os05g0272800 Os05g0272800 OSJNBb0061M13.13 OSNPB_050272800,Os05g0272200 OSNPB_050272200 ENOG411DPXE CDKE-1 Q84TI6 CDKE1_ARATH Cyclin-dependent kinase E-1 (CDKE;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cyclin-dependent kinase 8) (Protein HUA ENHANCER 3) FUNCTION: Involved in cell differentiation. Required for the specification of stamen and carpel identities and for the proper termination of stem cells in the floral meristem. {ECO:0000269|PubMed:15175247}. 2.7.11.22; 2.7.11.23 52797 Cyclin-dependent kinase E-1 (CDKE;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cyclin-dependent kinase 8) (Protein HUA ENHANCER 3) mediator complex [GO:0016592]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein phosphorylation [GO:0006468]; regulation of mitotic cell cycle [GO:0007346] TISSUE SPECIFICITY: Expressed in roots, leaves and stems. Expressed in young dividing tissue, such as shoot and root tips, lateral root primordia, young leaves and flowers. Expressed in the inflorescence meristem, inflorescence stem and young flowers. {ECO:0000269|PubMed:15175247}. locus:2160609; AT5G63610 Cyclin-dependent kinase Cyclin-dependent kinase E-1 (CDKE;1) (EC 2.7.11.22) (EC 2.7.11.23) Q336M2 CDKE1_ORYSJ CDKE-1 Os10g0580300 LOC_Os10g42950 OsJ_32608 OSJNBa0056G17.11 ENOG411DPXG F2A19.140 Q9M314 Q9M314_ARATH AT3g61540/F2A19_140 (Alpha/beta-Hydrolases superfamily protein) (Prolyl aminopeptidase-like protein) 57585 AT3g61540/F2A19_140 (Alpha/beta-Hydrolases superfamily protein) (Prolyl aminopeptidase-like protein) cytosol [GO:0005829]; vacuole [GO:0005773]; aminopeptidase activity [GO:0004177] locus:2082752; AT3G61540 alpha/beta hydrolase fold Os06g0163600 protein (Fragment) A0A0P0WTC2 A0A0P0WTC2_ORYSJ Os06g0163600 OSNPB_060163600 ENOG411DPXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dienelactone hydrolase family NA NA NA NA NA NA NA ENOG411DPXM SKD1 Q9ZNT0,Q9SGD4,F4HW05 VPS4_ARATH,Q9SGD4_ARATH,F4HW05_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4),T23G18.12 (Uncharacterized protein At1g08270) (Vacuolar protein sorting-associated protein),Vacuolar protein sorting-associated protein DISRUPTION PHENOTYPE: Normal vacuolar development in early stages of trichome development shortly followed by fragmentation of the large central vacuole which finally disappears completely, associated with the formation of abnormally enlarged late endosomes. Abnormal sorting of vacuolar proteins that are instead secreted. Trichomes contain frequently multiple nuclei (PubMed:20663085). Reduced ESCRT-III disassembly (PubMed:21810997). Blocked vacuolar trafficking (PubMed:22258747). Imbalanced Na(+)/K(+) ratio under salt stress (PubMed:23580756). {ECO:0000269|PubMed:20663085, ECO:0000269|PubMed:21810997, ECO:0000269|PubMed:22258747, ECO:0000303|PubMed:23580756}. FUNCTION: Involved in the transport of biosynthetic membrane proteins from the prevacuolar/endosomal compartment to the vacuole. Required for multivesicular body (MVB) protein sorting. Catalyzes the ATP-dependent dissociation of class E VPS proteins from endosomal membranes, such as the disassembly of the ESCRT-III complex (PubMed:17468262, PubMed:20663085, PubMed:21810997, PubMed:22258747, PubMed:24812106). May also regulate cell cycle (PubMed:20663085). Required during seed development for the formation of mucilage in seed coat and testa (PubMed:20930567). Involved in the maintenance of Na(+)/K(+) homeostasis under salt stress (PubMed:23580756). Required for cell expansion (PubMed:24385429). {ECO:0000269|PubMed:17468262, ECO:0000269|PubMed:20663085, ECO:0000269|PubMed:20930567, ECO:0000269|PubMed:21810997, ECO:0000269|PubMed:22258747, ECO:0000269|PubMed:24385429, ECO:0000269|PubMed:24812106, ECO:0000303|PubMed:23580756}. 3.6.4.6 48593,14064,14827 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4),T23G18.12 (Uncharacterized protein At1g08270) (Vacuolar protein sorting-associated protein),Vacuolar protein sorting-associated protein cytoplasm [GO:0005737]; multivesicular body [GO:0005771]; multivesicular body membrane [GO:0032585]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; cell cycle [GO:0007049]; endosome organization [GO:0007032]; potassium ion homeostasis [GO:0055075]; protein transport [GO:0015031]; sodium ion homeostasis [GO:0055078]; trichome branching [GO:0010091]; vacuole organization [GO:0007033]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Mostly expressed in leaves, to a lower extent in seeds, and barely in roots and flowers (at protein level) (PubMed:17468262). Particularly expressed in trichomes (PubMed:20663085). {ECO:0000269|PubMed:17468262, ECO:0000269|PubMed:20663085}. locus:2038678;,locus:2199983; AT2G27600,AT1G08270 Vacuolar protein sorting-associated protein Os01g0141300 protein (Putative p60 katanin),Os02g0159900 protein (Putative SKD1 protein),Os01g0141100 protein (Fragment),Os01g0141100 protein Q5ZEN9,Q6ETH5,A0A0P0UY25,A0A0P0UY01 Q5ZEN9_ORYSJ,Q6ETH5_ORYSJ,A0A0P0UY25_ORYSJ,A0A0P0UY01_ORYSJ Os01g0141300 OsJ_00317 OSNPB_010141300 P0019D06.2,Os02g0159900 B1103G11.33 OsJ_05463 OSNPB_020159900,Os01g0141100 OSNPB_010141100 ENOG411DPXN NRPB5A O81098,F4J2R9 RPB5A_ARATH,F4J2R9_ARATH DNA-directed RNA polymerases II and IV subunit 5A (RPB5a) (DNA-directed RNA polymerase II subunit E) (RNA polymerase I, II and III 24.3 kDa subunit) (AtRPB24.3),DNA binding / DNA-directed RNA polymerase FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerase IV which mediates short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of target sequences. {ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-1834949;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 24301,10241 DNA-directed RNA polymerases II and IV subunit 5A (RPB5a) (DNA-directed RNA polymerase II subunit E) (RNA polymerase I, II and III 24.3 kDa subunit) (AtRPB24.3),DNA binding / DNA-directed RNA polymerase DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase II, core complex [GO:0005665]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase IV complex [GO:0000418]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366]; transcription from RNA polymerase III promoter [GO:0006383],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves and seeds, and to a lower level, in flower buds, flowers and siliques. {ECO:0000269|PubMed:19141635}. locus:2087842;,locus:2089338; AT3G22320,AT3G16680 DNA-directed RNA polymerases I II and III subunit Os01g0805800 protein (Putative DNA-directed RNA polymerase II 23K chain) (cDNA clone:006-211-F07, full insert sequence) (cDNA clone:J033128E13, full insert sequence),Os04g0487300 protein (cDNA clone:J023098I05, full insert sequence) Q5VQW7,B7EQI7 Q5VQW7_ORYSJ,B7EQI7_ORYSJ Os01g0805800 OSNPB_010805800 P0034E02.61,Os04g0487300 OSNPB_040487300 ENOG411DPX0 Q93YV7,Q8H118,Q8VZV7,Q940J9,F4K6T0 PMT3_ARATH,PMT1_ARATH,PMT9_ARATH,PMT8_ARATH,F4K6T0_ARATH Probable methyltransferase PMT3 (EC 2.1.1.-),Probable methyltransferase PMT1 (EC 2.1.1.-),Probable methyltransferase PMT9 (EC 2.1.1.-),Probable methyltransferase PMT8 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein MISCELLANEOUS: Co-expressed with the galacturonosyltransferase GAUT1.,MISCELLANEOUS: Co-expressed with the galacturonosyltransferases GAUT8/QUASIMODO1 and GAUT9. 2.1.1.- 69237,69356,69864,70508,69890 Probable methyltransferase PMT3 (EC 2.1.1.-),Probable methyltransferase PMT1 (EC 2.1.1.-),Probable methyltransferase PMT9 (EC 2.1.1.-),Probable methyltransferase PMT8 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2129660;,locus:2090935;,locus:2145658;,locus:2018329; AT4G14360,AT3G23300,AT5G14430,AT1G04430 methyltransferase Dehydration-responsive protein-like (Os06g0687450 protein),Dehydration-responsive protein, putative, expressed (Os10g0477100 protein) Q653G1,Q9AV02 Q653G1_ORYSJ,Q9AV02_ORYSJ Os06g0687450 OsJ_22423 OSNPB_060687450 P0623A10.25,LOC_Os10g33720 Os10g0477100 OSJNBa0026O12.9 OSNPB_100477100 ENOG411DPX1 Q9LMJ7 Q9LMJ7_ARATH At1g07040 (Expressed protein) (F10K1.25 protein) (Plant/protein) (Uncharacterized protein At1g07040) 40638 At1g07040 (Expressed protein) (F10K1.25 protein) (Plant/protein) (Uncharacterized protein At1g07040) locus:2007372; AT1G07040 DUF1338 Os10g0463800 protein (cDNA clone:J033091E11, full insert sequence) Q337M4 Q337M4_ORYSJ Os10g0463800 LOC_Os10g32680 Os10g0463800 OSNPB_100463800 ENOG411DPX2 PI4KG2,PI4KG4,PI4KG3,T15B3_90,PI4K GAMMA 4 Q9SGW8,Q9ZPY9,Q9FNF8,Q9LXW4,F4IJ57 P4KG2_ARATH,P4KG4_ARATH,P4KG3_ARATH,Q9LXW4_ARATH,F4IJ57_ARATH Phosphatidylinositol 4-kinase gamma 2 (AtPI4Kgamma2) (PI-4Kgamma2) (PI4K gamma 2) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma 4 (AtPI4Kgamma4) (PI-4Kgamma4) (PI4K gamma 4) (EC 2.7.1.67) (Ubiquitin-like domain kinase gamma 4) (UbDK gamma 4),Phosphatidylinositol 4-kinase gamma 3 (AtPI4Kgamma3) (PI-4Kgamma3) (PI4K gamma 3) (EC 2.7.1.67),Protein kinase superfamily protein (Uncharacterized protein T15B3_90),Phosphoinositide 4-kinase gamma 4 FUNCTION: The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3). {ECO:0000250}.,FUNCTION: The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3) (By similarity). Undergoes autophosphorylation and phosphorylates serine/threonine residues of protein substrates. Phosphorylates RPN10 and UFD1 in vitro. {ECO:0000250, ECO:0000269|PubMed:17880284}. 2.7.1.67 60447,62625,64035,25078,46249 Phosphatidylinositol 4-kinase gamma 2 (AtPI4Kgamma2) (PI-4Kgamma2) (PI4K gamma 2) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma 4 (AtPI4Kgamma4) (PI-4Kgamma4) (PI4K gamma 4) (EC 2.7.1.67) (Ubiquitin-like domain kinase gamma 4) (UbDK gamma 4),Phosphatidylinositol 4-kinase gamma 3 (AtPI4Kgamma3) (PI-4Kgamma3) (PI4K gamma 3) (EC 2.7.1.67),Protein kinase superfamily protein (Uncharacterized protein T15B3_90),Phosphoinositide 4-kinase gamma 4 membrane [GO:0016020]; vacuole [GO:0005773]; 1-phosphatidylinositol 4-kinase activity [GO:0004430]; ATP binding [GO:0005524]; response to salt stress [GO:0009651],cytosol [GO:0005829]; membrane [GO:0016020]; 1-phosphatidylinositol 4-kinase activity [GO:0004430]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; phosphatidylinositol phosphorylation [GO:0046854]; protein autophosphorylation [GO:0046777]; response to salt stress [GO:0009651],nucleus [GO:0005634]; peroxisome [GO:0005777]; 1-phosphatidylinositol 4-kinase activity [GO:0004430]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; phosphatidylinositol binding [GO:0035091]; regulation of flower development [GO:0009909]; response to abscisic acid [GO:0009737]; response to salt [GO:1902074],kinase activity [GO:0016301] locus:2019419;locus:2019459;,locus:2039064;,locus:2169774;,locus:2097169; AT1G64460,AT2G46500,AT5G24240,AT3G43950 phosphatidylinositol 3- and 4-kinase family protein Os05g0590100 protein (Putative ubiquitin),Os06g0340600 protein (Fragment),Os06g0340600 protein (Putative ubiquitin) (cDNA clone:J013002D10, full insert sequence),Os01g0879850 protein,Os02g0290500 protein (Phosphatidylinositol 3-and 4-kinase-like) (cDNA clone:J013027K22, full insert sequence),Os01g0234850 protein,Os02g0290500 protein (Fragment),Os08g0273966 protein Q6I5E0,Q0DCE5,Q5Z885,A3A073,Q6K881,A0A0P0V079,A0A0P0VHT7,A0A0N7KPK4 Q6I5E0_ORYSJ,Q0DCE5_ORYSJ,Q5Z885_ORYSJ,A3A073_ORYSJ,Q6K881_ORYSJ,A0A0P0V079_ORYSJ,A0A0P0VHT7_ORYSJ,A0A0N7KPK4_ORYSJ Os05g0590100 OsJ_19742 OSJNBa0022J22.8 OSNPB_050590100,Os06g0340600 Os06g0340600 OSNPB_060340600,OJ1294_G12.30-1 Os06g0340600 P0428A03.16-1 OsJ_21238 OSNPB_060340600,Os01g0879850 OsJ_04290 OSNPB_010879850,Os02g0290500 Os02g0290500 OJ1086_G08.5 OJ1756_H07.61 OsJ_06315 OSNPB_020290500,Os01g0234850 OSNPB_010234850,Os02g0290500 OSNPB_020290500,Os08g0273966 OSNPB_080273966 ENOG411DPX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0518200 protein Q75II1 Q75II1_ORYSJ Os05g0518200 B1130G10.21 OSNPB_050518200 ENOG411DPX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase Os06g0531900 protein (Putative lipase) (cDNA clone:006-306-F12, full insert sequence) (cDNA clone:J013123P18, full insert sequence) Q5Z739 Q5Z739_ORYSJ Os06g0531900 OSNPB_060531900 P0506C10.1 ENOG411DPX8 IQD18,iqd17 Q9MAM4,B3H705,F4JHN2 Q9MAM4_ARATH,B3H705_ARATH,F4JHN2_ARATH IQ-domain 18 (T25K16.10),IQ-domain 18,IQ-domain 17 59172,41207,59996 IQ-domain 18 (T25K16.10),IQ-domain 18,IQ-domain 17 locus:2200945;,locus:2134628; AT1G01110,AT4G00820 IQ calmodulin-binding motif domain containing protein expressed Calmodulin-binding protein family-like (Os08g0115200 protein) Q6YXT2 Q6YXT2_ORYSJ Os08g0115200 OsJ_25818 OSNPB_080115200 P0427G12.22 ENOG411E6WD Q94K72,Q9MA09 Q94K72_ARATH,Q9MA09_ARATH Ephrin-A3 protein (Uncharacterized protein At1g16170),At1g79660/F20B17_9 (Ephrin-A3 protein) (F20B17.9) 10387,10479 Ephrin-A3 protein (Uncharacterized protein At1g16170),At1g79660/F20B17_9 (Ephrin-A3 protein) (F20B17.9) integral component of membrane [GO:0016021] locus:2200482;,locus:2019888; AT1G16170,AT1G79660 NA Os08g0266200 protein Q6YTK7 Q6YTK7_ORYSJ Os08g0266200 Os08g0266200 OsJ_26664 OSJNBa0023I13.26 OSNPB_080266200 ENOG411E6WA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: reductase NA NA NA NA NA NA NA ENOG411E6WM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Expressed protein (With alternative splicing) (Os03g0664400 protein) (Protease inhibitor/seed storage/LTP family protein, expressed) (cDNA clone:006-206-A08, full insert sequence),Expressed protein (With alternative splicing) (Os03g0664400 protein) (Protease inhibitor/seed storage/LTP family protein, expressed) (cDNA clone:001-018-C05, full insert sequence) Q75GY5,Q75GY4 Q75GY5_ORYSJ,Q75GY4_ORYSJ LOC_Os03g46150 Os03g0664400 OSJNBa0034D21.7 OSNPB_030664400,Os03g0664400 LOC_Os03g46150 OSJNBa0034D21.7 OSNPB_030664400 ENOG411E6WN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0421800 protein) (cDNA clone:002-101-E02, full insert sequence) Q53JV2 Q53JV2_ORYSJ Os11g0421800 LOC_Os11g22960 Os11g0421800 OSNPB_110421800 ENOG411E6WJ PRE4 F4JCN9 PRE4_ARATH Transcription factor PRE4 (Basic helix-loop-helix protein 161) (AtbHLH161) (bHLH 161) (Protein BANQUO 3) (Protein PACLOBUTRAZOL RESISTANCE 4) (bHLH transcription factor bHLH161) DISRUPTION PHENOTYPE: Pale-green sepals and carpels and decreased chlorophyll levels. {ECO:0000269|PubMed:20305124}. sepals and carpels are pale yellow or whitewhile the inflorescence stems and siliques are purple. Floral organs are smaller than WT. Flowers cauline leaves stems and siliques have a decreased amount of chlorophyll as compared to WT.,Same as bnq3 single mutants: sepals and carpels are pale yellow or whitewhile the inflorescence stems and siliques are purple,Pale yellowish sepaloid second-whorl organs. Smaller floral organs; Albino or pale green sepals and carpels; Purple inflorescences and carpels-V. Irish-2010 FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}. MISCELLANEOUS: Plants over-expressing PRE4 show long hypocotyls, pale green and slightly narrow leaves, elongated petioles and early flowering. They are not sensitive to the gibberellin inhibitor paclobutrazol during seed germination (PubMed:16527868). {ECO:0000305|PubMed:16527868}. 10360 Transcription factor PRE4 (Basic helix-loop-helix protein 161) (AtbHLH161) (bHLH 161) (Protein BANQUO 3) (Protein PACLOBUTRAZOL RESISTANCE 4) (bHLH transcription factor bHLH161) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; gibberellic acid mediated signaling pathway [GO:0009740]; photomorphogenesis [GO:0009640]; regulation of growth [GO:0040008]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}. locus:2100342; AT3G47710 HLH Transcription factor ILI6 (OsILI6) (Protein INCREASED LEAF INCLINATION 6) (Protein POSITIVE REGULATOR OF GRAIN LENGTH 1),Transcription factor ILI7 (OsILI7) (Basic helix-loop-helix protein 173) (OsbHLH173) (Protein INCREASED LEAF INCLINATION 7) (bHLH transcription factor bHLH173) Q0DUR2,Q338G6 ILI6_ORYSJ,ILI7_ORYSJ ILI6 PGL1 Os03g0171300 LOC_Os03g07510 OsJ_09588,ILI7 BHLH173 LOC_Os10g26460 Os10g0404300 FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.,FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. MISCELLANEOUS: Plants over-expressing ILI6 show enhanced bending of the lamina joints and produce grains increased in size, caused by elongated cells in lemma. {ECO:0000305|PubMed:22363621}. ENOG411E6WU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E6WQ GDU3 Q9FHH5 GDU3_ARATH Protein GLUTAMINE DUMPER 3 (Protein LESS SUSCEPTIBLE TO BSCTV 1) (Protein LBS1) FUNCTION: Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction. {ECO:0000269|PubMed:20018597, ECO:0000269|PubMed:20042021, ECO:0000269|Ref.7}. MISCELLANEOUS: Overexpression of GLUTAMINE DUMPER 3 leads to free amino acid levels accumulation, plant size decrease and to an enhanced resistance to geminivirus infection (Ref.7, PubMed:20042021, PubMed:20018597). 16203 Protein GLUTAMINE DUMPER 3 (Protein LESS SUSCEPTIBLE TO BSCTV 1) (Protein LBS1) integral component of membrane [GO:0016021]; amino acid transport [GO:0006865]; modulation by virus of host morphology or physiology [GO:0019048]; regulation of amino acid export [GO:0080143]; response to virus [GO:0009615]; secretion by cell [GO:0032940] TISSUE SPECIFICITY: Expressed in the vascular tissues. Also detected in anthers. {ECO:0000269|PubMed:20018597, ECO:0000269|Ref.7}. locus:504954872; AT5G57685 arabidopsis thaliana glutamine dumper 3 Os08g0446800 protein (cDNA, clone: J100040N04, full insert sequence) Q6ZAA9 Q6ZAA9_ORYSJ Os08g0446800 OsJ_27505 OSNPB_080446800 P0429B05.21 ENOG411E6WS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0116900 protein,Os06g0119800 protein,Os06g0121300 protein (Os06g0121650 protein) Q5VRK5,Q5VPQ5,Q5VQ85 Q5VRK5_ORYSJ,Q5VPQ5_ORYSJ,Q5VQ85_ORYSJ Os06g0116900 OsJ_25537 OSJNBa0019F11.33 OSNPB_060116900,Os06g0119800 OsJ_19929 OSJNBa0062J13.47 OSNPB_060119800 P0660D08.16,Os06g0121650 Os06g0121300 OSNPB_060121300 OSNPB_060121650 P0660D08.32 P0660D08.36 ENOG411E6WX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os01g0288200 protein (cDNA clone:001-111-G01, full insert sequence) Q5NB08 Q5NB08_ORYSJ Os01g0288200 OsJ_01378 OSNPB_010288200 P0469E05.4 P0511C01.24 ENOG411E6W0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AJ IDL2 Q6DUW9 IDL2_ARATH Protein IDA-LIKE 2 FUNCTION: May be involved in floral abscission. {ECO:0000269|PubMed:18660431}. MISCELLANEOUS: IDL2 is only partially redundant with IDA. 10712 Protein IDA-LIKE 2 extracellular space [GO:0005615]; floral organ abscission [GO:0010227] TISSUE SPECIFICITY: Expressed in leaves, buds, flowers, seedlings and seeds. Detected at the base of pedicel, in the floral and funicule abscission zones and in vascular tissues. {ECO:0000269|PubMed:12972671, ECO:0000269|PubMed:18660431}. locus:4010714076; AT5G64667 NA NA NA NA NA NA NA NA ENOG411E8AN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase (GlcNAc) NA NA NA NA NA NA NA ENOG411E8AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0125400 protein Q6K385 Q6K385_ORYSJ Os09g0125400 OJ1227_D07.31 OsJ_28426 OSJNBa0025H18.10 OSNPB_090125400 ENOG411E8AE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA (Guanine-1)-methyltransferase NA NA NA NA NA NA NA ENOG411E8AG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA metallothionein-like protein NA NA NA NA NA NA NA ENOG411E8AZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0418100 protein B9FF49 B9FF49_ORYSJ Os04g0418100 OsJ_14773 OSNPB_040418100 ENOG411E8AP A0A1P8AQ86 A0A1P8AQ86_ARATH Uncharacterized protein 8184 Uncharacterized protein NA Os09g0483150 protein (Fragment),Os07g0489650 protein (Fragment) A0A0P0XP60,A0A0P0X6H6 A0A0P0XP60_ORYSJ,A0A0P0X6H6_ORYSJ Os09g0483150 OSNPB_090483150,Os07g0489650 OSNPB_070489650 ENOG411E8AQ HIPP19 A0JPW5,Q9SJZ9 HIP19_ARATH,Q9SJZ9_ARATH Heavy metal-associated isoprenylated plant protein 19 (AtHIP19),Transmembrane protein (Uncharacterized protein At2g22340) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 15806,41918 Heavy metal-associated isoprenylated plant protein 19 (AtHIP19),Transmembrane protein (Uncharacterized protein At2g22340) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],integral component of membrane [GO:0016021] locus:2089870;,locus:2041288; AT3G21490,AT2G22340 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E8AR CLE46 Q8LDN4,A0A1P8BCT4 CLE46_ARATH,A0A1P8BCT4_ARATH CLAVATA3/ESR (CLE)-related protein 46 [Cleaved into: CLE46p],CLAVATA 3/ESR (CLE)-like protein FUNCTION: Extracellular signal peptide that regulates cell fate. {ECO:0000250}. 8850,6846 CLAVATA3/ESR (CLE)-related protein 46 [Cleaved into: CLE46p],CLAVATA 3/ESR (CLE)-like protein extracellular space [GO:0005615]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] locus:505006704; AT5G59305 NA NA NA NA NA NA NA NA ENOG411E8AS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AU SDH4 Q941A0 SDH4_ARATH Succinate dehydrogenase subunit 4, mitochondrial FUNCTION: Membrane-anchoring subunit of succinate dehydrogenase (SDH). {ECO:0000250|UniProtKB:P69054}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle. {ECO:0000305}. MetaCyc:AT2G46505-MONOMER; 16842 Succinate dehydrogenase subunit 4, mitochondrial integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; metal ion binding [GO:0046872]; succinate dehydrogenase (ubiquinone) activity [GO:0008177]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Expressed in flowers, inflorescences and stems. {ECO:0000269|PubMed:12374303}. locus:505006320; AT2G46505 succinate dehydrogenase NA NA NA NA NA NA NA ENOG411E8AV MBG8.24 Q9FFT3 Q9FFT3_ARATH At5g54970 13735 At5g54970 locus:2160185; AT5G54970 NA NA NA NA NA NA NA NA ENOG411E8AW Q9C9V8 Q9C9V8_ARATH At1g67920 (Uncharacterized protein T23K23.23) 7757 At1g67920 (Uncharacterized protein T23K23.23) locus:2200261; AT1G67920 NA NA NA NA NA NA NA NA ENOG411E8A8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8A0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Complex I intermediate-associated protein 30 (CIA30) NA NA NA NA NA NA NA ENOG411E8A1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD NA NA NA NA NA NA NA ENOG411E8A3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0386900 protein Q9AYG2 Q9AYG2_ORYSJ OSJNBa0094J09.8 Os10g0386900 LOC_Os10g24800 OsJ_31339 OSNPB_100386900 ENOG411E8A4 T8H10.50 Q9SCM7 Q9SCM7_ARATH At3g57450 (Uncharacterized protein T8H10.50) 9963 At3g57450 (Uncharacterized protein T8H10.50) locus:2103503; AT3G57450 NA Os07g0185900 protein Q7XI29 Q7XI29_ORYSJ Os07g0185900 OJ1339_B08.10 OsJ_23369 OSNPB_070185900 P0506C07.1 ENOG411E8A5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8A6 Q2V2S1,P0CAX9,P0CAY0,A8MR15 DEF20_ARATH,DEF21_ARATH,DEF28_ARATH,A8MR15_ARATH Putative defensin-like protein 20,Defensin-like protein 21,Putative defensin-like protein 28,Defensin-like (DEFL) family protein 10081,10241,8901,6761 Putative defensin-like protein 20,Defensin-like protein 21,Putative defensin-like protein 28,Defensin-like (DEFL) family protein extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640],integral component of membrane [GO:0016021] locus:1009023487;,locus:1009023341;,locus:4010714031; AT5G52605,AT4G14276,AT4G14272,AT5G39645 cell killing NA NA NA NA NA NA NA ENOG411E8A7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0227000 protein Q0ITQ9 Q0ITQ9_ORYSJ Os11g0227000 Os11g0227000 OSNPB_110227000 ENOG411EIV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA iron permease NA NA NA NA NA NA NA ENOG411EAZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411EAZY PDIL5-3 Q9LJU2,A0A1P8AX25,F4I7X9 PDI53_ARATH,A0A1P8AX25_ARATH,F4I7X9_ARATH Protein disulfide-isomerase 5-3 (AtPDIL5-3) (Protein disulfide-isomerase 12) (PDI12) (Protein disulfide-isomerase 8-1) (AtPDIL8-1),Protein disulfide-isomerase 5-like protein (DUF1692) FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}. 53996,54921,54364 Protein disulfide-isomerase 5-3 (AtPDIL5-3) (Protein disulfide-isomerase 12) (PDI12) (Protein disulfide-isomerase 8-1) (AtPDIL8-1),Protein disulfide-isomerase 5-like protein (DUF1692) cell [GO:0005623]; integral component of membrane [GO:0016021]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454],cell [GO:0005623]; integral component of membrane [GO:0016021]; isomerase activity [GO:0016853]; cell redox homeostasis [GO:0045454] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595}. locus:2085750;,locus:2036371; AT3G20560,AT1G50950 Endoplasmic reticulum vesicle transporter NA NA NA NA NA NA NA ENOG411EAZZ F24G24.210 Q9T0F1,Q9FM90,Q9LES9,Q9FM55,Q9SV82,Q501B7,A0A1P8B7S5,Q9SV81,F4HP61,F4JLN7,A0A1I9LP86 FB226_ARATH,FBD24_ARATH,FDL22_ARATH,FDL41_ARATH,FBD40_ARATH,Q501B7_ARATH,A0A1P8B7S5_ARATH,Q9SV81_ARATH,F4HP61_ARATH,F4JLN7_ARATH,A0A1I9LP86_ARATH F-box protein At4g09920,Putative FBD-associated F-box protein At5g56410,Putative F-box/FBD/LRR-repeat protein At3g56780,Putative F-box/FBD/LRR-repeat protein At5g62970,FBD-associated F-box protein At4g10400,At3g54910 (RNI-like superfamily protein),FBD, F-box and Leucine Rich Repeat domains containing protein,Leucine-rich repeat (LRR) family protein (Uncharacterized protein AT4g10410) (Uncharacterized protein F24G24.210),FBD / Leucine Rich Repeat domains containing protein 36578,58007,49563,51879,47053,42788,33552,30336,49304,37153,55252 F-box protein At4g09920,Putative FBD-associated F-box protein At5g56410,Putative F-box/FBD/LRR-repeat protein At3g56780,Putative F-box/FBD/LRR-repeat protein At5g62970,FBD-associated F-box protein At4g10400,At3g54910 (RNI-like superfamily protein),FBD, F-box and Leucine Rich Repeat domains containing protein,Leucine-rich repeat (LRR) family protein (Uncharacterized protein AT4g10410) (Uncharacterized protein F24G24.210),FBD / Leucine Rich Repeat domains containing protein locus:2140538;,locus:2161038;,locus:2103565;,locus:2166295;,locus:2122754;,locus:2082657;,locus:2122769;,locus:2016387;,locus:2122784; AT4G09920,AT5G56410,AT3G56780,AT5G62970,AT4G10400,AT3G54910,AT4G10410,AT1G19410,AT4G10420 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EAZT Q9SZ44,P0C2F8,Q3E6X9,Q56W59 FB309_ARATH,FB71_ARATH,FB47_ARATH,FBL84_ARATH F-box protein At4g27050,Putative F-box protein At1g64540,Putative F-box protein At1g47915,F-box/LRR-repeat protein At5g35995 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 51301,50023,8256,51915 F-box protein At4g27050,Putative F-box protein At1g64540,Putative F-box protein At1g47915,F-box/LRR-repeat protein At5g35995 protein ubiquitination [GO:0016567] locus:2116362;,locus:2019509;,locus:504956112;,locus:504954943; AT4G27050,AT1G64540,AT1G47915,AT5G35995 Inherit from euNOG: F-Box protein NA NA NA NA NA NA NA ENOG411EAZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411EAZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os12g0509600 protein,Expressed protein (Os12g0509200 protein) (cDNA clone:001-116-B08, full insert sequence),Os08g0347701 protein,Os10g0462300 protein (Fragment) Q2QQ20,Q2QQ24,Q6ZDK9,A0A0N7KRW8 Q2QQ20_ORYSJ,Q2QQ24_ORYSJ,Q6ZDK9_ORYSJ,A0A0N7KRW8_ORYSJ Os12g0509600 LOC_Os12g32520 Os12g0509600 OSNPB_120509600,Os12g0509200 LOC_Os12g32480 Os12g0509200 OSNPB_120509200,P0404D10.20 Os08g0347701 OSNPB_080347701,Os10g0462300 OSNPB_100462300 ENOG411EAZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EAZP Q8W0Z1 Q8W0Z1_ARATH AT3g20360/MQC12_11 (TRAF-like family protein) 41764 AT3g20360/MQC12_11 (TRAF-like family protein) locus:2092329; AT3G20360 MATH domain NA NA NA NA NA NA NA ENOG411EAZR O81843 O81843_ARATH Late embryogenesis abundant (LEA) protein-like protein (Uncharacterized protein AT4g27400) 38266 Late embryogenesis abundant (LEA) protein-like protein (Uncharacterized protein AT4g27400) locus:2131714; AT4G27400 Root cap NA NA NA NA NA NA NA ENOG411EAZS O24654,Q9FXB8,A0A1P8AME8,A0A1P8B1F4 CHI60_ARATH,Q9FXB8_ARATH,A0A1P8AME8_ARATH,A0A1P8B1F4_ARATH Endochitinase At2g43600 (EC 3.2.1.14),Chitinase family protein (Putative chitinase),Chitinase family protein ARA:AT2G43600-MONOMER;,ARA:AT1G56680-MONOMER; 3.2.1.14 30920,31183,33891,33274 Endochitinase At2g43600 (EC 3.2.1.14),Chitinase family protein (Putative chitinase),Chitinase family protein chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response [GO:0006952]; polysaccharide catabolic process [GO:0000272],chitin binding [GO:0008061]; chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032] locus:2043954;,locus:2027569; AT2G43600,AT1G56680 Glycoside hydrolase family 19 protein NA NA NA NA NA NA NA ENOG411EAZM GLR2.2,GLR2.3 Q9SHV1,Q9SHV2,A0A1P8B2P3,A0A1P8B2P4 GLR22_ARATH,GLR23_ARATH,A0A1P8B2P3_ARATH,A0A1P8B2P4_ARATH Glutamate receptor 2.2 (Ligand-gated ion channel 2.2),Glutamate receptor 2.3 (Ligand-gated ion channel 2.3),Glutamate receptor FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 102847,100809,103676,91473 Glutamate receptor 2.2 (Ligand-gated ion channel 2.2),Glutamate receptor 2.3 (Ligand-gated ion channel 2.3),Glutamate receptor integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots. {ECO:0000269|PubMed:12082126}. locus:2047256;,locus:2047251; AT2G24720,AT2G24710 Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EAZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain NA NA NA NA NA NA NA ENOG411EAZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Neurochondrin NA NA NA NA NA NA NA ENOG411EAZI CAR7,CAR6 Q9SSL1,Q9S764 CAR7_ARATH,CAR6_ARATH Protein C2-DOMAIN ABA-RELATED 7,Protein C2-DOMAIN ABA-RELATED 6 (Protein ENHANCED BENDING 1) DISRUPTION PHENOTYPE: Increased sensitivity to blue light leading to an enhanced phototropic bending and a faster response to gravitropic stimulus. {ECO:0000269|PubMed:21367967}. FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). {ECO:0000250|UniProtKB:Q9FHP6, ECO:0000250|UniProtKB:Q9LVH4}.,FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity). Prevents hypocotyl bending as well as gravitropic response under blue light conditions (PubMed:21367967). {ECO:0000250|UniProtKB:Q9FHP6, ECO:0000250|UniProtKB:Q9LVH4, ECO:0000269|PubMed:21367967}. 18657,19632 Protein C2-DOMAIN ABA-RELATED 7,Protein C2-DOMAIN ABA-RELATED 6 (Protein ENHANCED BENDING 1) nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547],nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; gravitropism [GO:0009630]; multicellular organism development [GO:0007275]; phototropism [GO:0009638]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547]; response to blue light [GO:0009637] locus:2014020;,locus:2014015; AT1G70810,AT1G70800 C2 domain NA NA NA NA NA NA NA ENOG411EAZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EAZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pirin C-terminal cupin domain NA NA NA NA NA NA NA ENOG411EAZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EAZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynamin central region Os08g0425100 protein,Os08g0425100 protein (Fragment) Q0J5L5,A0A0P0XG58 Q0J5L5_ORYSJ,A0A0P0XG58_ORYSJ Os08g0425100 Os08g0425100 OSNPB_080425100,Os08g0425100 OSNPB_080425100 ENOG411EAZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAZG B3LFC3,F4J0D2,F4J0D1 B3LFC3_ARATH,F4J0D2_ARATH,F4J0D1_ARATH At3g28690 (Protein kinase superfamily protein),Protein kinase superfamily protein 41961,52878,47140 At3g28690 (Protein kinase superfamily protein),Protein kinase superfamily protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2095517; AT3G28690 STYKc NA NA NA NA NA NA NA ENOG411EAZA Q9LVU3 YDG2_ARATH YDG domain-containing protein At5g47160 47188 YDG domain-containing protein At5g47160 nucleus [GO:0005634]; histone binding [GO:0042393] locus:2171574; AT5G47160 Pfam:YDG_SRA NA NA NA NA NA NA NA ENOG411EAZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lob domain-containing protein NA NA NA NA NA NA NA ENOG411EAZ8 MDB19.5 Q94JY3,Q9LUG8,F4J447 Q94JY3_ARATH,Q9LUG8_ARATH,F4J447_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein MDB19.5),AT3g23600/MDB19_9 (Alpha/beta-Hydrolases superfamily protein) (Contains similarity to endo-1,3-1,4-beta-D-glucanase),Alpha/beta-Hydrolases superfamily protein 26530,25862,25563 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein MDB19.5),AT3g23600/MDB19_9 (Alpha/beta-Hydrolases superfamily protein) (Contains similarity to endo-1,3-1,4-beta-D-glucanase),Alpha/beta-Hydrolases superfamily protein cytosol [GO:0005829]; hydrolase activity [GO:0016787],apoplast [GO:0048046]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; response to salt stress [GO:0009651],hydrolase activity [GO:0016787] locus:2088030;,locus:2088060; AT3G23570,AT3G23600 Dienelactone hydrolase family protein NA NA NA NA NA NA NA ENOG411EAZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-locus glycoprotein family NA NA NA NA NA NA NA ENOG411EAZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_27 NA NA NA NA NA NA NA ENOG411EAZ5 CYP82F1 Q7Y222,A0A1P8B2K4 Q7Y222_ARATH,A0A1P8B2K4_ARATH At2g25160 (Cytochrome P450, family 82, subfamily F, polypeptide 1) (Putative Cytochrome P450),Cytochrome P450, family 82, subfamily F, polypeptide 1 ARA:AT2G25160-MONOMER; 59954,48941 At2g25160 (Cytochrome P450, family 82, subfamily F, polypeptide 1) (Putative Cytochrome P450),Cytochrome P450, family 82, subfamily F, polypeptide 1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2040174; AT2G25160 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EAZ6 Q9SUW3 Q9SUW3_ARATH Sulfated surface-like glycoprotein (Uncharacterized protein AT4g22560) 29182 Sulfated surface-like glycoprotein (Uncharacterized protein AT4g22560) locus:2127585; AT4G22560 NA NA NA NA NA NA NA NA ENOG411EAZ7 SWEET17,SWEET16 Q84WN3,Q9LUR4,A0A1I9LLQ5,A0A1I9LLQ4 SWT17_ARATH,SWT16_ARATH,A0A1I9LLQ5_ARATH,A0A1I9LLQ4_ARATH Bidirectional sugar transporter SWEET17 (AtSWEET17) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 17),Bidirectional sugar transporter SWEET16 (AtSWEET16) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 16),Bidirectional sugar transporter SWEET,Nodulin MtN3 family protein DISRUPTION PHENOTYPE: High fructose levels in leaves, especially in vacuoles, due to impaired vacuolar fructose export (PubMed:23583552). Increased root sensitivity to high levels of fructose (PubMed:24381066). {ECO:0000269|PubMed:23583552, ECO:0000269|PubMed:24381066}.,DISRUPTION PHENOTYPE: Increased root sensitivity to high levels of fructose. {ECO:0000269|PubMed:24381066}. FUNCTION: Acts as a vacuolar hexose transporter (PubMed:25988582). Regulates fructose (Fru) homeostasis in leaves and roots by exporting/importing Fru through the tonoplast regarding metabolic demand (PubMed:23583552, PubMed:24381066). {ECO:0000269|PubMed:23583552, ECO:0000269|PubMed:24381066, ECO:0000303|PubMed:25988582}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the vacuolar membrane. Regulates sugars homeostasis in leaves and roots by exporting/importing them through the tonoplast regarding metabolic demand (PubMed:24028846). Acts as a vacuolar hexose transporter, such as glucose (Glc), fructose (Fru), and sucrose (Suc) (PubMed:25988582, PubMed:24381066, PubMed:24028846). {ECO:0000269|PubMed:24028846, ECO:0000269|PubMed:24381066, ECO:0000303|PubMed:25988582}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the membrane. {ECO:0000256|RuleBase:RU910715}. R-ATH-189200; 26799,25744,29611,21743 Bidirectional sugar transporter SWEET17 (AtSWEET17) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 17),Bidirectional sugar transporter SWEET16 (AtSWEET16) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 16),Bidirectional sugar transporter SWEET,Nodulin MtN3 family protein integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; fructose transmembrane transporter activity [GO:0005353]; sugar transmembrane transporter activity [GO:0051119]; cellular response to cold [GO:0070417]; cellular response to nitrogen starvation [GO:0006995]; circadian rhythm [GO:0007623]; fructose export from vacuole to cytoplasm [GO:1902334]; fructose transport [GO:0015755]; protein homooligomerization [GO:0051260]; response to absence of light [GO:0009646]; response to fructose [GO:0009750],integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; fructose transmembrane transporter activity [GO:0005353]; glucose transmembrane transporter activity [GO:0005355]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; cellular response to nitrogen starvation [GO:0006995]; fructose export from vacuole to cytoplasm [GO:1902334]; protein homooligomerization [GO:0051260]; response to cold [GO:0009409]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to osmotic stress [GO:0006970]; response to sucrose [GO:0009744],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] TISSUE SPECIFICITY: Expressed in leaves at low levels, mostly in xylem and parenchyma (PubMed:23583552, PubMed:24381066). Highly expressed in the cortex of roots, predominantly in tips and mature regions, especially in tonoplasts. Accumulates also in cotyledons, stems, flowers, and siliques (PubMed:24381066). {ECO:0000269|PubMed:23583552, ECO:0000269|PubMed:24381066}.,TISSUE SPECIFICITY: Mostly expressed in the cortex of mature roots, and, to a lower extent, in aerial organs such as leaves, stems, and flowers (PubMed:24381066). Mainly present in vascular parenchyma cells, especially in the petiole vasculature, flower stalks and at the base of individual, not fully developed flowers (PubMed:24028846). {ECO:0000269|PubMed:24028846, ECO:0000269|PubMed:24381066}. locus:2089363; AT4G15920,AT3G16690 Nodulin MtN3 family protein NA NA NA NA NA NA NA ENOG411EAZ0 PUB55 P0C6E7,A0A1P8AQW1 PUB55_ARATH,A0A1P8AQW1_ARATH Putative U-box domain-containing protein 55 (EC 2.3.2.27) (Plant U-box protein 55) (RING-type E3 ubiquitin transferase PUB54),RING/U-box superfamily protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 66036,66194 Putative U-box domain-containing protein 55 (EC 2.3.2.27) (Plant U-box protein 55) (RING-type E3 ubiquitin transferase PUB54),RING/U-box superfamily protein ubiquitin-protein transferase activity [GO:0004842] locus:2198165; AT1G01660 Ubox NA NA NA NA NA NA NA ENOG411EAZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0569800 protein (Fragment) A0A0P0X7N1 A0A0P0X7N1_ORYSJ Os07g0569800 OSNPB_070569800 ENOG411EAZ2 O81414 FBK79_ARATH Putative F-box/kelch-repeat protein At4g02310 40111 Putative F-box/kelch-repeat protein At4g02310 locus:2137849; AT4G02310 Kelch motif NA NA NA NA NA NA NA ENOG411EAZ3 Q9LI62,F4J5H1 Q9LI62_ARATH,F4J5H1_ARATH Alpha/beta-Hydrolases superfamily protein 45031,42288 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2102921; AT3G30380 Prolyl oligopeptidase family NA NA NA NA NA NA NA ENOG411DQKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain Glutathione S-transferase, C-terminal domain containing protein, expressed (Os12g0123200 protein) (cDNA, clone: J065050H09, full insert sequence),Os11g0125601 protein (Fragment) Q2QYE4,A0A0P0XY99 Q2QYE4_ORYSJ,A0A0P0XY99_ORYSJ Os12g0123200 LOC_Os12g02960 OSNPB_120123200,Os11g0125601 OSNPB_110125601 ENOG411DQKC AT2G03280.1 Q6E279,Q6NQ51,F4ISA5 Q6E279_ARATH,Q6NQ51_ARATH,F4ISA5_ARATH O-fucosyltransferase family protein,At1g14020 (Growth regulator like protein) (O-fucosyltransferase family protein) 55631,57571,58867 O-fucosyltransferase family protein,At1g14020 (Growth regulator like protein) (O-fucosyltransferase family protein) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],cytoplasm [GO:0005737]; transferase activity, transferring glycosyl groups [GO:0016757],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2014869;,locus:2056981; AT2G03280,AT1G14020 DUF246 domain-containing protein Axi 1 protein, putative, expressed (Os03g0169000 protein) (Putative auxin independent growth-related protein),Os03g0169000 protein (Fragment),Os01g0168600 protein Q8S7V6,A0A0P0VTK3,A0A0P0UYI7 Q8S7V6_ORYSJ,A0A0P0VTK3_ORYSJ,A0A0P0UYI7_ORYSJ OSJNBa0091P11.24 Os03g0169000 LOC_Os03g07310 OSNPB_030169000,Os03g0169000 OSNPB_030169000,Os01g0168600 OSNPB_010168600 ENOG411DQKD Q9LTU6 Q9LTU6_ARATH At3g13230 (RNA-binding KH domain-containing protein) (Uncharacterized protein At3g13230) 24009 At3g13230 (RNA-binding KH domain-containing protein) (Uncharacterized protein At3g13230) nucleolus [GO:0005730]; RNA binding [GO:0003723] locus:2088120; AT3G13230 RNA-binding protein Os01g0788950 protein (Putative partner of Nob1),Os03g0115200 protein (YOR3513c, putative, expressed) Q8RU96,Q10SP4 Q8RU96_ORYSJ,Q10SP4_ORYSJ Os01g0788950 OsJ_03725 OSNPB_010788950 P0415A04.48 P0557A01.6,LOC_Os03g02420 Os03g0115200 OSNPB_030115200 ENOG411DQKE PRXIIC,PRXIIB,PRXIID,TPX1 Q9SRZ4,Q9XEX2,O22711,F4ID64 PRX2C_ARATH,PRX2B_ARATH,PRX2D_ARATH,F4ID64_ARATH Peroxiredoxin-2C (EC 1.11.1.15) (Peroxiredoxin IIC) (Peroxiredoxin TPx2) (Thioredoxin peroxidase 2C) (Thioredoxin-dependent peroxidase 2),Peroxiredoxin-2B (EC 1.11.1.15) (Peroxiredoxin IIB) (Peroxiredoxin TPx1) (Thioredoxin peroxidase 2B) (Thioredoxin-dependent peroxidase 1),Peroxiredoxin-2D (EC 1.11.1.15) (Peroxiredoxin IID) (Thioredoxin peroxidase 2D),Thioredoxin-dependent peroxidase 1 FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. {ECO:0000305|PubMed:15890615}.,FUNCTION: Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in intracellular redox signaling. {ECO:0000269|PubMed:12913160}.; FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. {ECO:0000269|PubMed:12913160}.,FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides (By similarity). May be involved in intracellular redox signaling (Probable). {ECO:0000250|UniProtKB:A9PCL4, ECO:0000305|PubMed:15890615}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. {ECO:0000250|UniProtKB:A9PCL4}.,MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. C(P) is reactivated by glutaredoxin (Grx). {ECO:0000305|PubMed:12913160}. ARA:AT1G65970-MONOMER;,ARA:AT1G65980-MONOMER;,ARA:AT1G60740-MONOMER; 1.11.1.15 17414,17428,17472,9261 Peroxiredoxin-2C (EC 1.11.1.15) (Peroxiredoxin IIC) (Peroxiredoxin TPx2) (Thioredoxin peroxidase 2C) (Thioredoxin-dependent peroxidase 2),Peroxiredoxin-2B (EC 1.11.1.15) (Peroxiredoxin IIB) (Peroxiredoxin TPx1) (Thioredoxin peroxidase 2B) (Thioredoxin-dependent peroxidase 1),Peroxiredoxin-2D (EC 1.11.1.15) (Peroxiredoxin IID) (Thioredoxin peroxidase 2D),Thioredoxin-dependent peroxidase 1 cytoplasm [GO:0005737]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454],chloroplast [GO:0009507]; cytosol [GO:0005829]; membrane [GO:0016020]; plasma membrane [GO:0005886]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454]; response to cadmium ion [GO:0046686],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454],peroxidase activity [GO:0004601] TISSUE SPECIFICITY: Highly expressed in buds and flowers. Slightly expressed in green tissues. Also detected in pollen. {ECO:0000269|PubMed:12913160, ECO:0000269|Ref.7}.,TISSUE SPECIFICITY: Expressed in all tissues but mostly in reproductive tissues such as buds, flowers, siliques and seeds. {ECO:0000269|PubMed:12913160, ECO:0000269|Ref.5}.,TISSUE SPECIFICITY: Exclusively expressed in buds and flowers. Also detected in pollen. {ECO:0000269|PubMed:12913160}. locus:2009709;,locus:2009719;,locus:2036531; AT1G65970,AT1G65980,AT1G60740 Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in intracellular redox signaling Peroxiredoxin-2C (EC 1.11.1.15) (Peroxiredoxin IIC) (Thioredoxin peroxidase 2C) Q9FR35 PRX2C_ORYSJ PRXIIC Os01g0675100 LOC_Os01g48420 OJ1117_G01.9 OsJ_002891 P0485G01.43 FUNCTION: Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in intracellular redox signaling.; FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. {ECO:0000250|UniProtKB:Q9SRZ4}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. {ECO:0000250|UniProtKB:A9PCL4}. ENOG411DQKG SEC31A,SEC31B F4ICD9,Q8L611,A0A1P8AP97,F4J109,F4J110 SC31A_ARATH,SC31B_ARATH,A0A1P8AP97_ARATH,F4J109_ARATH,F4J110_ARATH Protein transport protein SEC31 homolog A (SEC31-like protein A),Protein transport protein SEC31 homolog B (SEC31-like protein B),Transducin/WD40 repeat-like superfamily protein,Transducin family protein / WD-40 repeat family protein FUNCTION: Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000305|PubMed:24280388}. R-ATH-204005; 106593,119875,105819,119717,118720 Protein transport protein SEC31 homolog A (SEC31-like protein A),Protein transport protein SEC31 homolog B (SEC31-like protein B),Transducin/WD40 repeat-like superfamily protein,Transducin family protein / WD-40 repeat family protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasmodesma [GO:0009506]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2034990;,locus:2087433; AT1G18830,AT3G63460 transport) protein Os07g0657200 protein,Os07g0657200 protein (Fragment) Q0D3Z9,A0A0P0X9L7,A0A0P0XA19 Q0D3Z9_ORYSJ,A0A0P0X9L7_ORYSJ,A0A0P0XA19_ORYSJ Os07g0657200 Os07g0657200 OSNPB_070657200,Os07g0657200 OSNPB_070657200 ENOG411DQKH RGLG3 Q8RX26 RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3 (EC 2.3.2.27) (RING domain ligase 3) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. The double mutant plants rglg3 and rglg4 show decreased sensitivity to jasmonate. {ECO:0000269|PubMed:22898498}. FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. Acts as upstream modulator of jasmonate (JA) signaling in response to various stimuli, such as JA-inhibited root growth, JA-inductive gene expression, coronatine-mediated pathogen susceptibility, wound-stimulated expression of JA-responsive genes and wound-induced JA biosynthesis (PubMed:22898498). Controls fumonisin B1 (FB1)-triggered programmed cell death (PCD) by modulating the JA signaling pathway. May mediate salicylic acid (SA) suppression of JA signaling in FB1-induced responses (PubMed:25788731). May mediate the formation of 'Lys-48'-linked multiubiquitin chains. Mediates the polyubiquitination and subsequent proteasomal degradation of the target protein GRXS17 (PubMed:27497447). {ECO:0000269|PubMed:22898498, ECO:0000269|PubMed:25788731, ECO:0000269|PubMed:27497447}. 2.3.2.27 41189 E3 ubiquitin-protein ligase RGLG3 (EC 2.3.2.27) (RING domain ligase 3) cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; defense response to bacterium [GO:0042742]; jasmonic acid mediated signaling pathway [GO:0009867]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:22898498}. locus:2160821; AT5G63970 E3 ubiquitin-protein ligase Copine I-like (Os01g0960500 protein) (cDNA clone:J013020F11, full insert sequence) Q5JMT9 Q5JMT9_ORYSJ Os01g0960500 OSNPB_010960500 P0401G10.28 P0483G10.3 ENOG411DQKI GLCAT14C Q8S8P3 GT14C_ARATH Beta-glucuronosyltransferase GlcAT14C (EC 2.4.1.-) (GT14 family glucuronic acid transferase 3) (AtGlcAT14C) FUNCTION: Beta-glucuronosyltransferase involved in the biosynthesis of type II arabinogalactan (AG). Modifies both the beta-1,6-linked galactan and beta-1,3-linked galactan present in type II AG. {ECO:0000269|PubMed:24739253}. 2.4.1.- 44459 Beta-glucuronosyltransferase GlcAT14C (EC 2.4.1.-) (GT14 family glucuronic acid transferase 3) (AtGlcAT14C) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; glucuronosyltransferase activity [GO:0015020] locus:505006303; AT2G37585 xylosyltransferase 2-like NA NA NA NA NA NA NA ENOG411DQKJ AT5G15740.1,AT3G02250.1 Q4V398,Q93ZR8 Q4V398_ARATH,Q93ZR8_ARATH At5g15740 (O-fucosyltransferase family protein) (Uncharacterized protein At5g15740),O-fucosyltransferase family protein (Putative auxin-independent growth promoter) (Putative auxin-independent growth promoter protein) 59041,59731 At5g15740 (O-fucosyltransferase family protein) (Uncharacterized protein At5g15740),O-fucosyltransferase family protein (Putative auxin-independent growth promoter) (Putative auxin-independent growth promoter protein) cytoplasm [GO:0005737]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2143181;,locus:2076552; AT5G15740,AT3G02250 DUF246 domain-containing protein NA NA NA NA NA NA NA ENOG411DQKK F4HU51 F4HU51_ARATH Acyl-CoA thioesterase II R-ATH-193368;R-ATH-2046106;R-ATH-389887;R-ATH-390247; Biosynthesis of secondary metabolites (01110),Biosynthesis of unsaturated fatty acids (01040),Fatty acid elongation (00062),Metabolic pathways (01100) 48155 Acyl-CoA thioesterase II peroxisomal matrix [GO:0005782]; peroxisome [GO:0005777]; acyl-CoA hydrolase activity [GO:0047617]; acyl-CoA metabolic process [GO:0006637]; fatty acid catabolic process [GO:0009062] locus:2198205; AT1G01710 acyl-coenzyme A thioesterase 8-like Os04g0558400 protein (cDNA clone:006-307-C01, full insert sequence) (cDNA clone:J033087D05, full insert sequence),Os04g0558400 protein (Fragment) Q0JB40,A0A0P0WDE0 Q0JB40_ORYSJ,A0A0P0WDE0_ORYSJ Os04g0558400 Os04g0558400 OsJ_15751 OSNPB_040558400,Os04g0558400 OSNPB_040558400 ENOG411DQKM CYP59 Q6Q151,Q94LA7,A0A1P8AQN8 CYP59_ARATH,Q94LA7_ARATH,A0A1P8AQN8_ARATH Peptidyl-prolyl cis-trans isomerase CYP59 (AtCYP59) (PPIase CYP59) (EC 5.2.1.8) (Cyclophilin-59),Cyclophilin (Uncharacterized protein T18F15.6),Cyclophilin 59 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Influences somehow regulation of RNA pol II (CTD) phosphorylation. Binds RNA with preferences for GC-rich sequences. Probably involved in activities connecting transcription and pre-mRNA processing. Involved in brassinostroid response. {ECO:0000269|PubMed:16497658, ECO:0000269|PubMed:23248006}. 5.2.1.8 58829,22661,40014 Peptidyl-prolyl cis-trans isomerase CYP59 (AtCYP59) (PPIase CYP59) (EC 5.2.1.8) (Cyclophilin-59),Cyclophilin (Uncharacterized protein T18F15.6),Cyclophilin 59 cytosol [GO:0005829]; nucleus [GO:0005634]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; protein folding [GO:0006457]; regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901407],peptidyl-prolyl cis-trans isomerase activity [GO:0003755],peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; RNA binding [GO:0003723]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864, ECO:0000269|PubMed:16497658}. locus:2024852;,locus:2823661; AT1G53720,AT1G44478 Peptidyl-prolyl cis-trans Os06g0670500 protein (Peptidylprolyl isomerase-like) (cDNA clone:J033008G16, full insert sequence),Os06g0670500 protein (Fragment),Os06g0670400 protein Q653M6,A0A0P0X073,A0A0P0WZZ1 Q653M6_ORYSJ,A0A0P0X073_ORYSJ,A0A0P0WZZ1_ORYSJ Os06g0670500 OsJ_22317 OSNPB_060670500 P0485A07.4,Os06g0670500 OSNPB_060670500,Os06g0670400 OSNPB_060670400 ENOG411DQKN Q9M144,Q9MA52 Q9M144_ARATH,Q9MA52_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g01240),F22F7.17 protein (S-adenosyl-L-methionine-dependent methyltransferase) 75161,54260 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein AT4g01240),F22F7.17 protein (S-adenosyl-L-methionine-dependent methyltransferase) cytoplasm [GO:0005737]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2125028;,locus:2079812; AT4G01240,AT3G05390 Pfam:DUF248 Os06g0474300 protein (cDNA clone:J033127N14, full insert sequence) Q69XX7 Q69XX7_ORYSJ Os06g0474300 Os06g0474300 OSNPB_060474300 P0633D04.37 ENOG411DQKP MED24.18 Q940I2 Q940I2_ARATH Thioredoxin family protein (Uncharacterized protein MED24.18) 37040 Thioredoxin family protein (Uncharacterized protein MED24.18) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; glutathione transferase activity [GO:0004364]; cell redox homeostasis [GO:0045454]; glutathione metabolic process [GO:0006749] locus:2150655; AT5G03880 Glutathione S-transferase N-terminal domain containing protein Os08g0558200 protein (Putative auxin-regulated protein) (cDNA clone:J023028D17, full insert sequence) Q6YZJ0 Q6YZJ0_ORYSJ Os08g0558200 Os08g0558200 OJ1150_A11.35 OsJ_28266 OSNPB_080558200 P0562A06.4 ENOG411DQKQ LECRKS5,LecRK-S.5 Q9FG33,A0A1P8BAS9 LRKS5_ARATH,A0A1P8BAS9_ARATH Probable L-type lectin-domain containing receptor kinase S.5 (LecRK-S.5) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein 2.7.11.1 72868,74450 Probable L-type lectin-domain containing receptor kinase S.5 (LecRK-S.5) (EC 2.7.11.1),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] locus:2170224; AT5G06740 L-type lectin-domain containing receptor kinase S.5-like Os04g0584050 protein (Os04g0584100 protein) (Fragment) C7J1S3 C7J1S3_ORYSJ Os04g0584100 Os04g0584050 OSNPB_040584100 ENOG411DQKR CHI-B P19171 CHIB_ARATH Basic endochitinase B (EC 3.2.1.14) (Pathogenesis-related protein 3) (AtChiB) (PR-3) FUNCTION: Defense against chitin-containing fungal pathogens. Seems particularly implicated in resistance to jasmonate-inducing pathogens such as A.brassicicola. In vitro antifungal activity against T.reesei, but not against A.solani, F.oxysporum, S.sclerotiorum, G.graminis and P.megasperma. {ECO:0000269|PubMed:9844023}. ARA:AT3G12500-MONOMER; 3.2.1.14 36184 Basic endochitinase B (EC 3.2.1.14) (Pathogenesis-related protein 3) (AtChiB) (PR-3) cytosol [GO:0005829]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640]; plant-type hypersensitive response [GO:0009626]; polysaccharide catabolic process [GO:0000272]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: High constitutive level in roots with lower levels in leaves and flowering shoots. {ECO:0000269|PubMed:16667600}. locus:2092502; AT3G12500 chitinase Chitinase 12 (EC 3.2.1.14) (Basic endochitinase 2) (Pathogenesis related (PR)-3 chitinase 12),Chitinase 1 (EC 3.2.1.14) (Class I chitinase a) (OsChia1a) (Pathogenesis related (PR)-3 chitinase 1),Chitinase 2 (EC 3.2.1.14) (Class I chitinase b) (OsChia1b) (Pathogenesis related (PR)-3 chitinase 2),Chitinase 3 (EC 3.2.1.14) (Basic endochitinase 1) (Class I chitinase c) (OsChia1c) (Pathogenesis related (PR)-3 chitinase 3),Chitinase 9 (EC 3.2.1.14) (Pathogenesis related (PR)-3 chitinase 9),Os05g0399300 protein (Fragment) P25765,Q42993,Q7DNA1,P24626,Q688M5,A0A0P0WM49 CHI12_ORYSJ,CHI1_ORYSJ,CHI2_ORYSJ,CHI3_ORYSJ,CHI9_ORYSJ,A0A0P0WM49_ORYSJ Cht12 RCH10 Os03g0418000 LOC_Os03g30470 OSJNBb0028K20.4 OSJNBb0056B16.17,Cht1 CH16 RC24 Os06g0726200 LOC_Os06g51060 OsJ_22713 P0017G10.4 P0548E04.24,Cht2 RC7 Os05g0399300 LOC_Os05g33130 OsJ_18467,Cht3 CH6 Os06g0726100 LOC_Os06g51050 P0017G10.2 P0548E04.22,Cht9 Cht1 Os05g0399400 LOC_Os05g33140 P0605G01.14,Os05g0399300 OSNPB_050399300 FUNCTION: Hydrolyzes chitin and plays a role in defense against fungal pathogens containing chitin. Its overexpression confers enhanced resistance to sheath blight pathogen (R.solani). {ECO:0000269|PubMed:12885168}.,FUNCTION: Hydrolyzes chitin and may play a role in defense against fungal pathogens containing chitin. {ECO:0000269|PubMed:8605293}.,FUNCTION: Hydrolyzes chitin and plays a role in defense against fungal pathogens containing chitin. Its overexpression confers enhanced resistance to sheath blight pathogen (R.solani). {ECO:0000269|PubMed:11166426, ECO:0000269|PubMed:18211919, ECO:0000269|PubMed:18323646}.,FUNCTION: Hydrolyzes chitin and plays a role in defense against fungal pathogens containing chitin. Inhibits the growth of T.reesei fungus on plate assay. {ECO:0000269|PubMed:12834284, ECO:0000269|PubMed:18211919}.,FUNCTION: May play a role in defense against fungal pathogens containing chitin. ENOG411DQKT PER25 O80822 PER25_ARATH Peroxidase 25 (Atperox P25) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G41480-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35886 Peroxidase 25 (Atperox P25) (EC 1.11.1.7) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] AT2G41480 peroxidase Peroxidase (EC 1.11.1.7) (Fragment) A0A0P0UYV2 A0A0P0UYV2_ORYSJ Os01g0172600 OSNPB_010172600 ENOG411DQKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0581500 protein (cDNA clone:J013099M07, full insert sequence),Os06g0587900 protein,Os08g0331900 protein (Fragment) Q5VPA8,A0A0N7KMC1,A0A0P0XEQ9 Q5VPA8_ORYSJ,A0A0N7KMC1_ORYSJ,A0A0P0XEQ9_ORYSJ Os06g0581500 Os06g0581500 OsJ_21796 OSNPB_060581500 P0498C03.1 P0566A10.35,Os06g0587900 OSNPB_060587900,Os08g0331900 OSNPB_080331900 ENOG411DQKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0178700 protein (Fragment) A0A0N7KCF9 A0A0N7KCF9_ORYSJ Os01g0178700 OSNPB_010178700 ENOG411DQKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA secologanin synthase-like Os05g0372300 protein (Putative cytochrome P450),Cytochrome P450-like (Os01g0728300 protein),Cytochrome P450 (Cytochrome P450 monooxygenase) (Cytochrome P450-like) (Os01g0627500 protein) (cDNA clone:J033048K24, full insert sequence),Os01g0728350 protein (Fragment) Q6I5Q4,Q9AX23,Q9FDZ1,A0A0N7KDP0 Q6I5Q4_ORYSJ,Q9AX23_ORYSJ,Q9FDZ1_ORYSJ,A0A0N7KDP0_ORYSJ Os05g0372300 Os05g0372300 OSJNBa0025P09.7 OSNPB_050372300,Os01g0728300 Os01g0728300 OsJ_03331 OSNPB_010728300 P0456A01.16,Rice2 CYP72A18 Os01g0627500 OsJ_02679 OSNPB_010627500 P0006C01.34 P0688A04.12,Os01g0728350 OSNPB_010728350 ENOG411DQKY NIP1-1,NIP1-2,NLM1,NIP1:2 Q8VZW1,Q8LFP7,A0A1P8B5K3,A0A1P8B5K6,A0A1P8B3A0 NIP11_ARATH,NIP12_ARATH,A0A1P8B5K3_ARATH,A0A1P8B5K6_ARATH,A0A1P8B3A0_ARATH Aquaporin NIP1-1 (NOD26-like intrinsic protein 1-1) (AtNIP1;1) (Nodulin-26-like major intrinsic protein 1) (NodLikeMip1) (Protein NLM1),Aquaporin NIP1-2 (NOD26-like intrinsic protein 1-2) (AtNIP1;2) (Nodulin-26-like major intrinsic protein 2) (NodLikeMip2) (Protein NLM2),NOD26-like major intrinsic protein 1,NOD26-like intrinsic protein 12 When grown in the presence of arsenite the mutant plants showed arsenite tolerance and reduced arsenic levels. Resistant to arsenite-T. Fujiwara-2009 FUNCTION: Water channel probably required to promote glycerol permeability and water transport across cell membranes. {ECO:0000269|PubMed:11007982}. 31715,31269,23940,24111,23430 Aquaporin NIP1-1 (NOD26-like intrinsic protein 1-1) (AtNIP1;1) (Nodulin-26-like major intrinsic protein 1) (NodLikeMip1) (Protein NLM1),Aquaporin NIP1-2 (NOD26-like intrinsic protein 1-2) (AtNIP1;2) (Nodulin-26-like major intrinsic protein 2) (NodLikeMip2) (Protein NLM2),NOD26-like major intrinsic protein 1,NOD26-like intrinsic protein 12 integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; arsenite transmembrane transporter activity [GO:0015105]; water channel activity [GO:0015250]; arsenite transport [GO:0015700]; regulation of defense response [GO:0031347]; response to arsenic-containing substance [GO:0046685],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; arsenite transmembrane transporter activity [GO:0015105]; water channel activity [GO:0015250]; arsenite transport [GO:0015700]; hydrogen peroxide transmembrane transport [GO:0080170]; response to arsenic-containing substance [GO:0046685],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Expressed in developing seeds. {ECO:0000269|PubMed:11806824}. locus:2117119;,locus:2117184; AT4G19030,AT4G18910 Aquaporin Aquaporin NIP1-1 (NOD26-like intrinsic protein 1-1) (OsNIP1;1),Aquaporin NIP1-3 (NOD26-like intrinsic protein 1-3) (OsNIP1;3),Os05g0205050 protein (Fragment),Os05g0205000 protein Q40746,Q0DK16,A0A0P0WJ46,A0A0N7KKB4 NIP11_ORYSJ,NIP13_ORYSJ,A0A0P0WJ46_ORYSJ,A0A0N7KKB4_ORYSJ NIP1-1 rMIP1 YK347 Os02g0232900 LOC_Os02g13870 OJ1705_E12.32,NIP1-3 Os05g0205000 LOC_Os05g11560 OSJNBb0115F21.2,Os05g0205050 OSNPB_050205050,Os05g0205000 OSNPB_050205000 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411DQKZ UBP25 Q9FPS2 UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 (EC 3.4.19.12) (Deubiquitinating enzyme 25) (AtUBP25) (Ubiquitin thioesterase 25) (Ubiquitin-specific-processing protease 25) FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT3G14400-MONOMER; R-ATH-5689880; 3.4.19.12 73293 Ubiquitin carboxyl-terminal hydrolase 25 (EC 3.4.19.12) (Deubiquitinating enzyme 25) (AtUBP25) (Ubiquitin thioesterase 25) (Ubiquitin-specific-processing protease 25) thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2090985; AT3G14400 ubiquitin carboxyl-terminal hydrolase Os05g0510300 protein (cDNA clone:J013034M15, full insert sequence) Q0DGV1 Q0DGV1_ORYSJ Os05g0510300 Os05g0510300 OSNPB_050510300 ENOG411DQK0 TAR4,TAR3 Q93Z38,Q9FE98,A0A1P8ARY5,A0A1P8ASE5 TAR4_ARATH,TAR3_ARATH,A0A1P8ARY5_ARATH,A0A1P8ASE5_ARATH Tryptophan aminotransferase-related protein 4 (EC 2.6.1.-),Tryptophan aminotransferase-related protein 3 (EC 2.6.1.-),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein FUNCTION: Probable aminotransferase. {ECO:0000250}. ARA:AT1G34040-MONOMER; 2.6.1.- 52430,51654,40876,44147 Tryptophan aminotransferase-related protein 4 (EC 2.6.1.-),Tryptophan aminotransferase-related protein 3 (EC 2.6.1.-),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein integral component of membrane [GO:0016021]; carbon-sulfur lyase activity [GO:0016846]; transaminase activity [GO:0008483],carbon-sulfur lyase activity [GO:0016846]; transferase activity [GO:0016740] locus:2009031;,locus:2009056; AT1G34060,AT1G34040 tryptophan aminotransferase-related protein 4-like Alliin lyase-like (Os01g0717700 protein) (cDNA clone:J013000P04, full insert sequence),Cysteine-sulphoxide lyase-like (Os01g0717400 protein) (cDNA clone:J013134F14, full insert sequence) Q942G1,Q942G4 Q942G1_ORYSJ,Q942G4_ORYSJ Os01g0717700 Os01g0717700 OsJ_03260 OSNPB_010717700 P0480C01.8 P0683B11.33,Os01g0717400 OSNPB_010717400 P0480C01.3 P0683B11.28 ENOG411DQK2 TOR Q9FR53,F4I4X6 TOR_ARATH,F4I4X6_ARATH Serine/threonine-protein kinase TOR (EC 2.7.11.1) (Protein TARGET OF RAPAMYCIN) (AtTOR),Target of rapamycin DISRUPTION PHENOTYPE: Embryo lethality when homozygous. Premature arrest of endosperm and embryo development. RNAi mutant exhibits plant growth arrest and reduced expression of brassinosteroid (BR)-responsive genes, as well as abolished exogenous sugar-mediated promotion of BZR1 accumulation (PubMed:27345161). RNAi plants are impaired in sugar-mediated (e.g. glucose and sucrose) root growth promotion and associated genes expression (PubMed:23542588). In response to auxin, deficient plants have polysomes prebound by inactive ATPK1/S6K1, and loading of uORF-mRNAs and activation TIF3H1/eIF3h are impaired (PubMed:23524850). In RNAi plants, severe alteration of watermelon mosaic virus (WMV) infection, but only slight delay of turnip mosaic virus (TuMV) infection (PubMed:25979731). Deficient plants are resistant to viral infection by cauliflower mosaic virus (CaMV), by failing to support CaMV Tav protein-mediated transactivation of reinitiation (PubMed:21343906). {ECO:0000269|PubMed:11983923, ECO:0000269|PubMed:21343906, ECO:0000269|PubMed:23524850, ECO:0000269|PubMed:23542588, ECO:0000269|PubMed:25979731, ECO:0000269|PubMed:27345161}. larger plants more resistant to stress Embryo defective; Preglobular / Globular-C. Robaglia-2002 FUNCTION: Essential cell growth regulator that controls development from early embryo to seed production. Controls plant growth in environmental stress conditions. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Can phosphorylate TAP46, a regulatory subunit of protein phosphatase 2A that modulates cell growth and survival (PubMed:21216945). Involved in modulating the transition from heterotrophic to photoautotrophic growth by regulating the expression of chloroplast- and photosynthesis-associated genes (PubMed:27479935). Essential for auxin signaling transduction, probably acting in polysomes to maintain the active ATPK1/S6K1 (and thus TIF3H1/eIF3h) phosphorylation status that is critical for translation reinitiation (e.g. uORF-mRNAs loading) (PubMed:23524850, PubMed:27014314). Promotes abscisic acid (ABA) biosynthesis (PubMed:26459592). Involved in the regulation of sugar-mediated (e.g. glucose and sucrose) glycolysis- and mitochondrial bioenergetics-dependent root growth promotion (PubMed:23542588). Required for sugar (e.g. glucose) promotion of hypocotyl elongation in the dark, by activating the brassinosteroid pathway and stabilizing BZR1. The regulation of BZR1 degradation is dependent on autophagy (PubMed:27345161). {ECO:0000269|PubMed:11983923, ECO:0000269|PubMed:16377759, ECO:0000269|PubMed:17543119, ECO:0000269|PubMed:17721444, ECO:0000269|PubMed:20686696, ECO:0000269|PubMed:21216945, ECO:0000269|PubMed:21266656, ECO:0000269|PubMed:21428923, ECO:0000269|PubMed:23173928, ECO:0000269|PubMed:23275579, ECO:0000269|PubMed:23524850, ECO:0000269|PubMed:23542588, ECO:0000269|PubMed:26459592, ECO:0000269|PubMed:27014314, ECO:0000269|PubMed:27345161, ECO:0000269|PubMed:27479935}.; FUNCTION: (Microbial infection) Binding to cauliflower mosaic virus (CaMV) Tav protein is critical for both translation reinitiation and viral fitness (PubMed:21343906). When activated by CaMV P6, promotes CaMV translation by inhibiting cellular autophagy and suppressing both silencing and innate immunity, thus confering sensitivity to P.syringae (PubMed:27120694). {ECO:0000269|PubMed:21343906, ECO:0000269|PubMed:27120694}.; FUNCTION: (Microbial infection) Required during infection by some potyvirus such as Watermelon mosaic virus (WMV) but not for turnip mosaic virus (TuMV). {ECO:0000269|PubMed:25979731}. MISCELLANEOUS: Inducible silencing in seedlings or adult plants leads to plant growth arrest. Plants slightly silencing TOR show constitutive autophagy and reduced shoot and root growth, leaf size, seed production and resistance to osmotic stress. Plants overexpressing TOR show increased shoot and root growth, leaf size, seed production and resistance to osmotic stress. Plants expressing FKBP12 (BP12) are sensitive to rapamycin. BP12 plants repressed by rapamycin exhibit slower growth and development leading to poor nutrient uptake and light energy utilization. {ECO:0000269|PubMed:17543119, ECO:0000269|PubMed:17721444, ECO:0000269|PubMed:20686696, ECO:0000269|PubMed:21266656, ECO:0000269|PubMed:21428923, ECO:0000269|PubMed:23275579}. R-ATH-3371571; 2.7.11.1 279190,275970 Serine/threonine-protein kinase TOR (EC 2.7.11.1) (Protein TARGET OF RAPAMYCIN) (AtTOR),Target of rapamycin cytoplasm [GO:0005737]; nucleus [GO:0005634]; polysome [GO:0005844]; 1-phosphatidylinositol-3-kinase activity [GO:0016303]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; macromolecular complex binding [GO:0044877]; protein kinase activity [GO:0004672]; protein self-association [GO:0043621]; protein serine/threonine kinase activity [GO:0004674]; regulatory region DNA binding [GO:0000975]; abscisic acid biosynthetic process [GO:0009688]; auxin-activated signaling pathway [GO:0009734]; brassinosteroid mediated signaling pathway [GO:0009742]; defense response [GO:0006952]; DNA repair [GO:0006281]; embryo development ending in seed dormancy [GO:0009793]; gravitropism [GO:0009630]; negative regulation of autophagy [GO:0010507]; negative regulation of defense response to virus [GO:0050687]; positive regulation of abscisic acid biosynthetic process [GO:0010116]; positive regulation of auxin mediated signaling pathway [GO:0010929]; positive regulation of brassinosteroid mediated signaling pathway [GO:1900459]; positive regulation of cell growth [GO:0030307]; positive regulation of embryonic development [GO:0040019]; positive regulation of glucose mediated signaling pathway [GO:1902661]; positive regulation of rRNA processing [GO:2000234]; positive regulation of transcription, DNA-templated [GO:0045893]; post-embryonic development [GO:0009791]; response to auxin [GO:0009733]; response to rapamycin [GO:1901355]; response to virus [GO:0009615]; rRNA transcription [GO:0009303]; sucrose mediated signaling [GO:0009745]; viral process [GO:0016032],ATP binding [GO:0005524]; macromolecular complex binding [GO:0044877]; protein serine/threonine kinase activity [GO:0004674] DEVELOPMENTAL STAGE: One day after fertilization, expressed in endosperm, embryo, and the chalazal proliferating tissue. At globular stage, no longer expressed in endosperm, but still in embryo up to the heart and torpedo stages. In mature embryo, expressed in the apical and primary root meristems and dividing vascular tissues. During lateral root formation, expressed in the lateral root primordia and remains during the formation of the emerging secondary root meristem. {ECO:0000269|PubMed:11983923}. TISSUE SPECIFICITY: Highly expressed in root meristems, shoot apical meristem (SAM) and floral buds. {ECO:0000269|PubMed:11983923, ECO:0000269|PubMed:15270681, ECO:0000269|PubMed:15607746, ECO:0000269|PubMed:23275579}. locus:2031090; AT1G50030 target of rapamycin Serine/threonine-protein kinase TOR (EC 2.7.11.1) (Protein TARGET OF RAPAMYCIN) (OsTOR),Os05g0235300 protein (Fragment) Q0DJS1,A0A0P0WJP4 TOR_ORYSJ,A0A0P0WJP4_ORYSJ TOR Os05g0235300 LOC_Os05g14550 OSJNBa0093E24.9,Os05g0235300 OSNPB_050235300 FUNCTION: Essential cell growth regulator that controls plant development. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy (By similarity). {ECO:0000250}. ENOG411DQK5 RABA4E,RABA4A,RABA4B Q9SJZ5,Q9FJN8,Q9SMQ6 RAA4E_ARATH,RAA4A_ARATH,RAA4B_ARATH Putative Ras-related protein RABA4e (AtRABA4e),Ras-related protein RABA4a (AtRABA4a),Ras-related protein RABA4b (AtRABA4b) (Ras-related protein GB3) (AtGB3) (Ras-related protein Rab11G) (AtRab11G) FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}.,FUNCTION: Regulator of membrane trafficking. May be required for secretion of cell wall components in cells. Endocytosis (04144),Pancreatic secretion (04972),Vasopressin-regulated water reabsorption (04962),Endocrine and other factor-regulated calcium reabsorption (04961) 19911,24842,24407 Putative Ras-related protein RABA4e (AtRABA4e),Ras-related protein RABA4a (AtRABA4a),Ras-related protein RABA4b (AtRABA4b) (Ras-related protein GB3) (AtGB3) (Ras-related protein Rab11G) (AtRab11G) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; GTP binding [GO:0005525]; GTPase activity [GO:0003924],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell wall biogenesis [GO:0042546]; protein transport [GO:0015031],early endosome membrane [GO:0031901]; plasma membrane [GO:0005886]; root hair tip [GO:0035619]; trans-Golgi network membrane [GO:0032588]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; kinase binding [GO:0019900]; cell wall biogenesis [GO:0042546]; endocytic recycling [GO:0032456]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. Expressed in tips of growing root hair cells. {ECO:0000269|PubMed:15155878}. locus:2171790;,locus:2140079; AT2G22390,AT5G65270,AT4G39990 ras-related protein Os10g0377400 protein (Ras-related protein Rab11D, putative, expressed) (cDNA clone:J033040K07, full insert sequence) Q338Z5 Q338Z5_ORYSJ Os10g0377400 LOC_Os10g23100 Os10g0377400 OsJ_31310 OSNPB_100377400 ENOG411DQK7 MBM17.4 F4I5M8,B5X4Z9,Q8VZG4,F4JM74,Q9LVN9,Q84JM7,A0A1P8B693,A0A1P8AP30,A0A1P8B696,F4JM75 F4I5M8_ARATH,B5X4Z9_ARATH,Q8VZG4_ARATH,F4JM74_ARATH,Q9LVN9_ARATH,Q84JM7_ARATH,A0A1P8B693_ARATH,A0A1P8AP30_ARATH,A0A1P8B696_ARATH,F4JM75_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein,At2g16750 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein),At1g21590/F24J8_9 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein),Protein kinase superfamily protein,At5g63940 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein) (Similarity to protein kinase) (Uncharacterized protein At5g63940),Protein kinase superfamily protein (Uncharacterized protein At4g35030) 82987,68877,84023,50643,77356,37221,37771,80077,34511,42848 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein,At2g16750 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein),At1g21590/F24J8_9 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein),Protein kinase superfamily protein,At5g63940 (Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein) (Similarity to protein kinase) (Uncharacterized protein At5g63940),Protein kinase superfamily protein (Uncharacterized protein At4g35030) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468]; response to stress [GO:0006950],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672] locus:2195975;,locus:2059919;,locus:2026957;,locus:2131616;,locus:2160801; AT1G77280,AT2G16750,AT1G21590,AT4G35030,AT5G63940 kinase family Os11g0194900 protein (Fragment),Os03g0241600 protein (Fragment),Os03g0241600 protein (Protein kinase family protein, putative, expressed),Os12g0181200 protein,Os12g0180500 protein,Os02g0569100 protein Q0IU30,Q0DTK6,Q10PA1,A0A0P0Y881,A0A0P0Y7Q0,A0A0P0VKL1 Q0IU30_ORYSJ,Q0DTK6_ORYSJ,Q10PA1_ORYSJ,A0A0P0Y881_ORYSJ,A0A0P0Y7Q0_ORYSJ,A0A0P0VKL1_ORYSJ Os11g0194900 OSNPB_110194900,Os03g0241600 OSNPB_030241600,Os03g0241600 LOC_Os03g13820 OsJ_10094 OSNPB_030241600,Os12g0181200 OSNPB_120181200,Os12g0180500 OSNPB_120180500,Os02g0569100 OSNPB_020569100 ENOG411DQK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TBC Os03g0283800 protein A0A0P0VW65 A0A0P0VW65_ORYSJ Os03g0283800 OSNPB_030283800 ENOG411DQK9 F4J3A9,F4J3B0 F4J3A9_ARATH,F4J3B0_ARATH Protein serine/threonine kinase 53020,52660 Protein serine/threonine kinase ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2080848; AT3G51270 serine threonine-protein kinase Os01g0888700 protein (Putative RIO kinase 2) (cDNA clone:J033030B16, full insert sequence) Q5N820 Q5N820_ORYSJ Os01g0888700 B1099D03.31 OSNPB_010888700 P0434C04.51 ENOG411ECW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EERT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tRNA (Uracil-5-)-methyltransferase NA NA NA NA NA NA NA ENOG411EERU KRP5 Q9LRY0 KRP5_ARATH Cyclin-dependent kinase inhibitor 5 (Inhibitor/interactor of CDK protein 3) (KIP-related protein 5) FUNCTION: Inhibits CYCD2-1/CDKA-1 complex kinase activity without interaction with the complex. {ECO:0000269|PubMed:16376885}. 21424 Cyclin-dependent kinase inhibitor 5 (Inhibitor/interactor of CDK protein 3) (KIP-related protein 5) nucleoplasm [GO:0005654]; chromatin DNA binding [GO:0031490]; cyclin-dependent protein serine/threonine kinase inhibitor activity [GO:0004861]; cell cycle arrest [GO:0007050]; negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045736]; positive regulation of DNA endoreduplication [GO:0032877] TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots and leaves. {ECO:0000269|PubMed:11449057}. locus:2087248; AT3G24810 Cyclin-dependent kinase inhibitor NA NA NA NA NA NA NA ENOG411ECWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: transposon protein Os08g0561000 protein (Ribosomal protein-like),Os04g0286500 protein (cDNA clone:002-112-F05, full insert sequence),Myb family protein-like (Os08g0225900 protein),Os08g0461232 protein Q6YYW9,Q0JEE5,Q7F0Z6,A0A0P0XH65 Q6YYW9_ORYSJ,Q0JEE5_ORYSJ,Q7F0Z6_ORYSJ,A0A0P0XH65_ORYSJ P0604E01.25 Os08g0561000 OSNPB_080561000,Os04g0286500 Os04g0286500 OSNPB_040286500,OJ1221_H04.110 Os08g0225900 OSNPB_080225900 P0494D11.32,Os08g0461232 OSNPB_080461232 ENOG411ECWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: P2X receptors are ATP-gated ion channels that play a role in intracellular calcium signaling. Not required for the purinergic response to extracellular nucleotides NA NA NA NA NA NA NA ENOG411ECWZ Q494P1 Q494P1_ARATH At5g25330 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) 41651 At5g25330 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) membrane [GO:0016020]; plasmodesma [GO:0009506]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2145492; AT5G25330 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411ECWS RWK1 A5PHT0,A0A1P8AMJ5,F4I9A5 Y1448_ARATH,A0A1P8AMJ5_ARATH,F4I9A5_ARATH Uncharacterized protein At1g24485 (Arabidopsis thaliana envelope membrane integrase) (Protein ARTEMIS) (Receptor without kinase 1),ER protein carbohydrate-binding protein 53041,46431,62496 Uncharacterized protein At1g24485 (Arabidopsis thaliana envelope membrane integrase) (Protein ARTEMIS) (Receptor without kinase 1),ER protein carbohydrate-binding protein integral component of membrane [GO:0016021] locus:4515102579; AT1G24485 NA NA NA NA NA NA NA NA ENOG411ECWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD dependent oxidoreductase NA NA NA NA NA NA NA ENOG411ECWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EER2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0492700 protein A3BJY0 A3BJY0_ORYSJ Os07g0492700 OsJ_24308 OSNPB_070492700 ENOG411EER3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EER5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411EER6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EER7 GATA17,AtGATA17L Q9LIB5,Q8GW81 GAT17_ARATH,Q8GW81_ARATH GATA transcription factor 17,GATA type zinc finger transcription factor family protein (Uncharacterized protein At4g16141) FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 20610,21183 GATA transcription factor 17,GATA type zinc finger transcription factor family protein (Uncharacterized protein At4g16141) nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2093678;,locus:504955441; AT3G16870,AT4G16141 GATA zinc finger NA NA NA NA NA NA NA ENOG411EIX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2NZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain Os10g0474000 protein (Putative aspartate-semialdehyde dehydrogenase) Q7XDG4 Q7XDG4_ORYSJ Os10g0474000 LOC_Os10g33450 Os10g0474000 OSJNBa0001K12.14 OSNPB_100474000 ENOG411E2NY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VIT family Vacuolar iron transporter homolog 3 (Protein NODULIN-LIKE 3),Vacuolar iron transporter homolog 2 (Protein NODULIN-LIKE 2),Os04g0538400 protein (Fragment) Q84ZM7,B7F138,A0A0P0WD18 VITH3_ORYSJ,VITH2_ORYSJ,A0A0P0WD18_ORYSJ Os08g0153300 LOC_Os08g05720 OJ1066_B03.106 OJ1349_D05.127,Os04g0538400 LOC_Os04g45520 OSJNBa0091D06.17,Os04g0538400 OSNPB_040538400 FUNCTION: Probable vacuolar iron transporter that may be involved in the regulation of iron distribution throughout the plant. {ECO:0000250}. ENOG411E2NX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal peptidase complex subunit Probable signal peptidase complex subunit 3 (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) (SPC22) (SPase 22 kDa subunit),Signal peptidase complex subunit 3 (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) Q9LGB4,Q0JQY7 SPCS3_ORYSJ,Q0JQY7_ORYSJ Os01g0131800 LOC_Os01g04030 P0504H10.30,Os01g0131800 Os01g0131800 OsJ_00248 OSNPB_010131800 FUNCTION: Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. {ECO:0000250}.,FUNCTION: Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. {ECO:0000256|PIRNR:PIRNR016089}. ENOG411E2NW M4I22.200 Q93VI9 Q93VI9_ARATH AT4g27390/M4I22_200 (Transmembrane protein) (Uncharacterized protein M4I22.200) 25927 AT4g27390/M4I22_200 (Transmembrane protein) (Uncharacterized protein M4I22.200) integral component of membrane [GO:0016021] locus:2131699; AT4G27390 NA Os05g0502500 protein Q60EI6 Q60EI6_ORYSJ Os05g0502500 Os05g0502500 OsJ_19108 OSJNBa0017K09.12 OSNPB_050502500 ENOG411E2NV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Late embryogenesis abundant protein, expressed (Os03g0168100 protein) (Putative embryo-specific protein) (cDNA clone:J033036H02, full insert sequence) Q8S7U3 Q8S7U3_ORYSJ OSJNBa0091P11.33 LOC_Os03g07180 Os03g0168100 OSNPB_030168100 ENOG411E2NU RPS14A,RPS14C,RPS14B Q9SIH0,P42036,Q9CAX6 RS141_ARATH,RS143_ARATH,RS142_ARATH 40S ribosomal protein S14-1,40S ribosomal protein S14-3,40S ribosomal protein S14-2 R-ATH-156827;R-ATH-1799339;R-ATH-6791226;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 16257,16238,16273 40S ribosomal protein S14-1,40S ribosomal protein S14-3,40S ribosomal protein S14-2 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; mRNA 5'-UTR binding [GO:0048027]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; mRNA 5'-UTR binding [GO:0048027]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; mRNA 5'-UTR binding [GO:0048027]; mRNA binding [GO:0003729]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2053501;,locus:2079914;,locus:2080692; AT2G36160,AT3G52580,AT3G11510 40S ribosomal protein Os02g0162500 protein (Putative ribosomal protein S14) (cDNA clone:001-008-D11, full insert sequence) (cDNA clone:J023090I10, full insert sequence),40S ribosomal protein S14 (OJ000126_13.9 protein) (Os02g0534800 protein) (Os04g0413600 protein) (cDNA clone:J023086F11, full insert sequence) (cDNA clone:J033040D12, full insert sequence) Q6H7T1,Q7XSA6 Q6H7T1_ORYSJ,Q7XSA6_ORYSJ Os02g0162500 Os02g0162500 OJ9003_G05.34 OsJ_05486 OSNPB_020162500,Os04g0413600 Os02g0534800 Os04g0413600 B1136H02.20 OJ000126_13.9 OJ1112_G07.7 OsJ_07016 OSNPB_020534800 OSNPB_040413600 ENOG411E2NT F4P12_190 Q9LFG9 Q9LFG9_ARATH At3g53490 (Uncharacterized protein F4P12_190) (Valine-tRNA ligase) 25605 At3g53490 (Uncharacterized protein F4P12_190) (Valine-tRNA ligase) integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2084091; AT3G53490 NA Expressed protein (Os03g0282800 protein) Q10N48 Q10N48_ORYSJ LOC_Os03g17440 Os03g0282800 OsJ_10384 OSNPB_030282800 ENOG411E2NS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os03g0279700 protein (Zinc finger DNA-binding protein, putative, expressed) (cDNA clone:002-181-F05, full insert sequence) Q10N75 Q10N75_ORYSJ Os03g0279700 LOC_Os03g17150 Os03g0279700 OSNPB_030279700 ENOG411E2NR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Maf-like protein Maf-like protein, expressed (Os03g0724700 protein) (cDNA clone:002-104-C06, full insert sequence),Maf-like protein, expressed (Os03g0724700 protein) (cDNA clone:002-144-A12, full insert sequence),Maf-like protein, expressed (Os03g0724700 protein) (cDNA clone:002-110-A08, full insert sequence) Q10DP6,Q10DP4,Q10DP5 Q10DP6_ORYSJ,Q10DP4_ORYSJ,Q10DP5_ORYSJ Os03g0724700 LOC_Os03g51479 OSNPB_030724700,LOC_Os03g51479 Os03g0724700 OSNPB_030724700 ENOG411E2NQ F4IFY5,A0A1P8B0V0 F4IFY5_ARATH,A0A1P8B0V0_ARATH DNA ligase-like protein 24693,19916 DNA ligase-like protein ligase activity [GO:0016874] locus:1006230129; AT2G33793 NA Expressed protein (Myosin-like protein) (Os03g0837800 protein) (cDNA clone:002-139-C12, full insert sequence),Os07g0208801 protein Q851M5,A0A0P0X3U4 Q851M5_ORYSJ,A0A0P0X3U4_ORYSJ OSJNBa0042I09.19 LOC_Os03g62160 Os03g0837800 OsJ_13287 OSNPB_030837800,Os07g0208801 OSNPB_070208801 ENOG411E2NP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0672300 protein) (cDNA clone:J013059O19, full insert sequence),Os06g0541600 protein Q2QZT8,A0A0N7KM87 Q2QZT8_ORYSJ,A0A0N7KM87_ORYSJ Os11g0672300 LOC_Os11g44870 Os11g0672300 OSNPB_110672300,Os06g0541600 OSNPB_060541600 ENOG411E2NN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSA NA NA NA NA NA NA NA ENOG411E2NM Q9FKV3 Q9FKV3_ARATH Ethylene-regulated nuclear protein ERT2-like protein (Ethylene-responsive nuclear protein-like protein) 37337 Ethylene-regulated nuclear protein ERT2-like protein (Ethylene-responsive nuclear protein-like protein) integral component of membrane [GO:0016021] locus:2158690; AT5G44350 Inherit from euNOG: Ethylene-responsive nuclear protein Expressed protein (Os03g0661500 protein) (cDNA clone:J023061D21, full insert sequence) Q75GQ8 Q75GQ8_ORYSJ OSJNBb0065L20.5 LOC_Os03g45930 Os03g0661500 OsJ_11993 OSJNBa0034D21.29 OSNPB_030661500 ENOG411E2NK ZHD8,ZHD9 Q9LXG0,Q9LHF0 ZHD8_ARATH,ZHD9_ARATH Zinc-finger homeodomain protein 8 (AtZHD8) (Homeobox protein 30) (AtHB-30) (Zinc finger homeodomain transcriptional factor ZFHD3),Zinc-finger homeodomain protein 9 (AtZHD9) (Homeobox protein 34) (AtHB-34) FUNCTION: Putative transcription factor. 29382,33560 Zinc-finger homeodomain protein 8 (AtZHD8) (Homeobox protein 30) (AtHB-30) (Zinc finger homeodomain transcriptional factor ZFHD3),Zinc-finger homeodomain protein 9 (AtZHD9) (Homeobox protein 34) (AtHB-34) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]; glucosinolate metabolic process [GO:0019760]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.,TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}. locus:2150871;,locus:2095157; AT5G15210,AT3G28920 homeobox protein NA NA NA NA NA NA NA ENOG411E2NJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0299500 protein Q5JL40 Q5JL40_ORYSJ Os01g0299500 OSNPB_010299500 P0487H02.24 P0682B08.2 ENOG411E2NI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy metal-associated domain containing protein Os08g0405700 protein (cDNA clone:002-141-A09, full insert sequence) Q6ZBC3 Q6ZBC3_ORYSJ Os08g0405700 OsJ_27250 OSNPB_080405700 P0685B10.33 ENOG411E2NH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: gpi-anchored protein Os09g0297800 protein (Putative GPI-anchored protein) (cDNA clone:002-120-C12, full insert sequence) Q69TA3 Q69TA3_ORYSJ Os09g0297800 OJ1381_H04.11 OSNPB_090297800 P0592C05.35 ENOG411E2NG Q9SRT8 Q9SRT8_ARATH Small acidic-like protein (Uncharacterized protein F14P3.13) 25615 Small acidic-like protein (Uncharacterized protein F14P3.13) locus:2076497; AT3G02220 Uncharacterized conserved protein (DUF2039) Os01g0763000 protein (cDNA clone:J013022F08, full insert sequence) Q5JMG3 Q5JMG3_ORYSJ Os01g0763000 Os01g0763000 OSNPB_010763000 P0512C01.42 ENOG411E2NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2NE GSTU8 Q9SR36 GSTU8_ARATH Glutathione S-transferase U8 (AtGSTU8) (EC 2.5.1.18) (GST class-tau member 8) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT3G09270-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25714 Glutathione S-transferase U8 (AtGSTU8) (EC 2.5.1.18) (GST class-tau member 8) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; toxin catabolic process [GO:0009407] locus:2083544; AT3G09270 glutathione NA NA NA NA NA NA NA ENOG411E2ND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0681200 protein (Putative BRH1 RING finger protein) (cDNA clone:006-203-C10, full insert sequence) (cDNA clone:J023114C23, full insert sequence) (cDNA clone:J023150J15, full insert sequence),OSJNBa0011J08.19 protein (Os04g0579200 protein) (cDNA clone:J023107E20, full insert sequence) Q6EPN1,Q7XQ70 Q6EPN1_ORYSJ,Q7XQ70_ORYSJ Os02g0681200 Os02g0681200 OsJ_07936 OSNPB_020681200 P0663F07.34,Os04g0579200 OSJNBa0011J08.19 OSNPB_040579200 ENOG411E2NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ethylene response factor 1 Os02g0797100 protein (Putative ethylene response factor 1),Os06g0181700 protein (cDNA clone:002-142-C04, full insert sequence) Q6KAJ7,Q0DE28 Q6KAJ7_ORYSJ,Q0DE28_ORYSJ Os02g0797100 OJ1004_E04.29 OsJ_08726 OSNPB_020797100,Os06g0181700 Os06g0181700 OSNPB_060181700 ENOG411E2NB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E2NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 domain Os04g0546550 protein,Os03g0691600 protein,Os01g0605600 protein A0A0P0WD45,A0A0P0W2B6,A0A0N7KDA4 A0A0P0WD45_ORYSJ,A0A0P0W2B6_ORYSJ,A0A0N7KDA4_ORYSJ Os04g0546550 OSNPB_040546550,Os03g0691600 OSNPB_030691600,Os01g0605600 OSNPB_010605600 ENOG411E2N9 Q94EG4,A0A1I9LTQ0,A0A1I9LTQ1 Q94EG4_ARATH,A0A1I9LTQ0_ARATH,A0A1I9LTQ1_ARATH At3g56820/T8M16_150 (RmlC-type cupin),RmlC-type cupin 24375,18145,22567 At3g56820/T8M16_150 (RmlC-type cupin),RmlC-type cupin endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802] locus:2103630; AT3G56820 NA Os01g0810200 protein (cDNA clone:J023010J12, full insert sequence) Q5VQN8 Q5VQN8_ORYSJ Os01g0810200 Os01g0810200 OsJ_03821 OSNPB_010810200 P0468B07.34 ENOG411E2N8 F4I908 F4I908_ARATH CA-responsive protein 38918 CA-responsive protein integral component of membrane [GO:0016021] locus:505006127; AT1G17665 Inherit from KOG: 3hydroxyisobutyrate dehydrogenase Os01g0197400 protein (cDNA clone:J033116D22, full insert sequence),Os01g0197350 protein Q5QMM8,A0A0P0UZV0 Q5QMM8_ORYSJ,A0A0P0UZV0_ORYSJ B1046G12.3 Os01g0197400 OsJ_00741 OSNPB_010197400 P0419B01.15,Os01g0197350 OSNPB_010197350 ENOG411E2N7 RPL24 P92959,F4K1S8 RK24_ARATH,F4K1S8_ARATH 50S ribosomal protein L24, chloroplastic (CL24) (Protein SUPPRESSOR OF VARIEGATION 8),Translation protein SH3-like family protein DISRUPTION PHENOTYPE: Reduced plant size and pale green leaves. {ECO:0000269|PubMed:22900828}. FUNCTION: One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes (PubMed:22900828). {ECO:0000250, ECO:0000269|PubMed:22900828}. 21977,19753 50S ribosomal protein L24, chloroplastic (CL24) (Protein SUPPRESSOR OF VARIEGATION 8),Translation protein SH3-like family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; plastid translation [GO:0032544],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2172154; AT5G54600 ribosomal protein L24 Os06g0683200 protein (Putative 50S ribosomal protein L24, chloroplast) (cDNA clone:006-303-A09, full insert sequence) (cDNA clone:J023054E10, full insert sequence) Q653V9 Q653V9_ORYSJ Os06g0683200 OsJ_22397 OSNPB_060683200 P0009H10.6 P0547F09.39 ENOG411E2N6 FLA21 Q9FL53 FLA21_ARATH Fasciclin-like arabinogalactan protein 21 FUNCTION: May be a cell surface adhesion protein. 38899 Fasciclin-like arabinogalactan protein 21 extracellular region [GO:0005576] locus:2169464; AT5G06920 fasciclin-like arabinogalactan protein NA NA NA NA NA NA NA ENOG411E2N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os03g0147300 protein,Os04g0426500 protein,Os04g0428300 protein,Os09g0514001 protein Q947Y9,A0A0P0WA89,A0A0N7KJ25,A0A0P0XP74 Q947Y9_ORYSJ,A0A0P0WA89_ORYSJ,A0A0N7KJ25_ORYSJ,A0A0P0XP74_ORYSJ Os03g0147300 OsJ_09408 OSJNBa0067N01.7 OSNPB_030147300,Os04g0426500 OSNPB_040426500,Os04g0428300 OSNPB_040428300,Os09g0514001 OSNPB_090514001 ENOG411E2N4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0341300 protein (cDNA clone:J023055J16, full insert sequence) Q5ZB32 Q5ZB32_ORYSJ Os01g0341300 Os01g0341300 OJ1111_G12.19 OsJ_01629 OSNPB_010341300 ENOG411E2N3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:3_5_exonuc Os01g0737600 protein,Os01g0737700 protein (Fragment) Q5JND6,A0A0N7KDQ1 Q5JND6_ORYSJ,A0A0N7KDQ1_ORYSJ Os01g0737600 Os01g0737600 OsJ_03381 OSJNBb0021A09.18 OSNPB_010737600,Os01g0737700 OSNPB_010737700 ENOG411E2N2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E2N1 Q8RXT2,A0A1P8B4K6 Q8RXT2_ARATH,A0A1P8B4K6_ARATH Regulator of Vps4 activity in the MVB pathway protein (Uncharacterized protein At4g32350),Regulator of Vps4 activity in the MVB pathway protein R-ATH-6798695; 83975,73782 Regulator of Vps4 activity in the MVB pathway protein (Uncharacterized protein At4g32350),Regulator of Vps4 activity in the MVB pathway protein protein transport [GO:0015031] locus:2127796; AT4G32350 Regulator of Vps4 activity in the MVB pathway NA NA NA NA NA NA NA ENOG411EHZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EHZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: crinkler (CRN) family protein NA NA NA NA NA NA NA ENOG411EHZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0385000 protein (Fragment) A0A0P0V2S0 A0A0P0V2S0_ORYSJ Os01g0385000 OSNPB_010385000 ENOG411EHZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1070) Os01g0591400 protein Q94JC5 Q94JC5_ORYSJ Os01g0591400 OsJ_02432 OSNPB_010591400 P0710A02.9 ENOG411EHZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclotide family NA NA NA NA NA NA NA ENOG411EHZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0676400 protein (Fragment) A0A0P0XAD1 A0A0P0XAD1_ORYSJ Os07g0676400 OSNPB_070676400 ENOG411EHZP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Spinster homolog NA NA NA NA NA NA NA ENOG411EHZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ7 F4JGK7 F4JGK7_ARATH Uncharacterized protein 14263 Uncharacterized protein locus:6530298207; AT4G04972 NA NA NA NA NA NA NA NA ENOG411E4CA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADF Actin-depolymerizing factor 3 (ADF-3) (OsADF3) Q84TB6 ADF3_ORYSJ ADF3 Os03g0820500 LOC_Os03g60580 OJ1754_E06.21 OsJ_13138 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (By similarity). {ECO:0000250}. ENOG411E4CK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein ATL3F E3 ubiquitin-protein ligase EL5 (EC 2.3.2.27) (Protein ELICITOR 5) (RING-type E3 ubiquitin transferase EL5),Os11g0649801 protein (Fragment) Q9LRB7,A0A0N7KTA5 EL5_ORYSJ,A0A0N7KTA5_ORYSJ EL5.1 EL5 Os02g0559800 LOC_Os02g35329 P0435E12.16; EL5.2 EL5 Os02g0560200 LOC_Os02g35347 P0435E12.20; EL5.3 EL5 Os02g0560600 LOC_Os02g35365 P0435E12.24; EL5.4 EL5 Os02g0561000 LOC_Os02g35383 P0435E12.28; EL5.5 EL5 Os02g0561400 LOC_Os02g35401 P0435E12.32; EL5.6 EL5 Os02g0561800 LOC_Os02g35429 P0435E12.37,Os11g0649801 OSNPB_110649801 FUNCTION: Functions as a E3 ubiquitin-protein ligase in cooperation with the E2 ubiquitin conjugating enzymes UBC5A and UBC5B. Involved in root development. Required for the maintenance of cell viability after the initiation of root primordial formation. May mediate the degradation of cytotoxic proteins produced in root cells after the actions of auxin, cytokinin and jasmonic acid. Mediates 'Lys-48'-linked polyubiquitination of MBP in vitro. {ECO:0000269|PubMed:12028574, ECO:0000269|PubMed:16186120, ECO:0000269|PubMed:17559513, ECO:0000269|PubMed:19704739}. ENOG411DURA rps3 P56798 RR3_ARATH 30S ribosomal protein S3, chloroplastic 25188 30S ribosomal protein S3, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleoid [GO:0009295]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] locus:504954703; ATCG00800 Ribosomal protein S3 30S ribosomal protein S3, chloroplastic P0C485 RR3_ORYSJ rps3 Nip111 ENOG411DURG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) Os01g0118600 protein Q0JR53 Q0JR53_ORYSJ Os01g0118600 Os01g0118600 OSNPB_010118600 ENOG411DURE EIF(ISO)4G1 Q93ZT6,F4HYS3 IF4G1_ARATH,F4HYS3_ARATH Eukaryotic translation initiation factor isoform 4G-1 (eIF(iso)4G-1),MIF4G domain-containing protein DISRUPTION PHENOTYPE: Displays resistance to potyvirus (PPV or LMV) infection. I4g1/i4g2 double mutants show reduced germination rates, slow growth rates, moderate chlorosis, late flowering, impaired fertility and reduced long term seed viability. They also exhibit altered responses to dehydration, salinity, and heat stress. The i4g1 and i4g2 double mutant has reduced amounts of chlorophyll a and b. {ECO:0000269|PubMed:17316629, ECO:0000269|PubMed:20694742}. Double mutant i4g1/i4g2 knockout plants show reduced germination rates slow growth rates moderate chlorosis impaired fertility and reduced long term seed viability. Double mutant plants also exhibit altered responses to dehydration salinity and heat stress. The i4g2 and i4g1/i4g2 double mutant has reduced amounts of chlorophyll a and b suggesting a role in the expression of chloroplast proteins. General protein synthesis did not appear to be affected as the levels of gross protein expression did not appear to change in the mutants. FUNCTION: Plays a role in the accumulation of some potyvirus during viral infection. {ECO:0000269|PubMed:17316629}. R-ATH-156827;R-ATH-166208;R-ATH-72662;R-ATH-72702;R-ATH-975956;R-ATH-975957; 85572,25667 Eukaryotic translation initiation factor isoform 4G-1 (eIF(iso)4G-1),MIF4G domain-containing protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417],RNA binding [GO:0003723] locus:2174353;,locus:2027124; AT5G57870,AT1G62410 Initiation factor Eukaryotic translation initiation factor isoform 4G-1 (eIF(iso)-4G-1) (eIF(iso)4G-1) (Eukaryotic initiation factor iso-4F subunit p82) (eIF-(iso)4F p82 subunit),Eukaryotic translation initiation factor isoform 4G-2 (eIF(iso)-4G-2) (eIF(iso)4G-2) (Eukaryotic initiation factor iso-4F subunit p82) (eIF-(iso)4F p82 subunit),Zinc finger CCCH domain-containing protein 43 (OsC3H43),Os04g0499300 protein (Fragment) Q84PB3,Q6K641,Q5Z5Q3,A0A0N7KJB1,A0A0P0WC18 IF4G1_ORYSJ,IF4G2_ORYSJ,C3H43_ORYSJ,A0A0N7KJB1_ORYSJ,A0A0P0WC18_ORYSJ Os04g0499300 LOC_Os04g42140 OSJNBa0029H02.9,Os02g0611500 LOC_Os02g39840 OJ1004_A05.11 OsJ_07496,Os06g0520600 LOC_Os06g32860 OSJNBa0077L03.22,Os04g0499300 OSNPB_040499300 DISRUPTION PHENOTYPE: Displays resistance to rice yellow mottle virus (RYMV) infection. {ECO:0000269|PubMed:16774645}. FUNCTION: Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection. {ECO:0000269|PubMed:16774645}.,FUNCTION: Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection. {ECO:0000250}. ENOG411DURJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DURM Q9SA69,A0A1P8AM39,A0A1P8AM10 Y1301_ARATH,A0A1P8AM39_ARATH,A0A1P8AM10_ARATH BTB/POZ domain-containing protein At1g03010,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 71160,68253,71364 BTB/POZ domain-containing protein At1g03010,Phototropic-responsive NPH3 family protein pollen tube growth [GO:0009860]; protein ubiquitination [GO:0016567] locus:2007564; AT1G03010 BTB POZ domain-containing protein Os03g0347700 protein (Transposon protein, putative, Mutator sub-class, expressed) Q10LI7 Q10LI7_ORYSJ LOC_Os03g22600 Os03g0347700 OSNPB_030347700 ENOG411DURS BGAL11,BGAL13,BGAL14 Q9SCV1,Q9SCU9,Q9SCU8,F4JUE3 BGA11_ARATH,BGA13_ARATH,BGA14_ARATH,F4JUE3_ARATH Beta-galactosidase 11 (Lactase 11) (EC 3.2.1.23),Beta-galactosidase 13 (Lactase 13) (EC 3.2.1.23),Beta-galactosidase 14 (Lactase 14) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) ARA:AT4G35010-MONOMER;,ARA:AT2G16730-MONOMER; 3.2.1.23 95570,95900,101222,119544 Beta-galactosidase 11 (Lactase 11) (EC 3.2.1.23),Beta-galactosidase 13 (Lactase 13) (EC 3.2.1.23),Beta-galactosidase 14 (Lactase 14) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23) apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],nucleus [GO:0005634]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975]; mRNA splicing, via spliceosome [GO:0000398] TISSUE SPECIFICITY: Ubiquitous, with higher expression levels in roots, flowers and siliques. {ECO:0000269|PubMed:16267099}. locus:2131596;,locus:2059899;,locus:2121214; AT4G35010,AT2G16730,AT4G38590 beta-galactosidase Beta-galactosidase 11 (EC 3.2.1.23) (Lactase 115),Os08g0549200 protein (Fragment) Q6ZJJ0,A0A0P0XIY1 BGA11_ORYSJ,A0A0P0XIY1_ORYSJ Os08g0549200 LOC_Os08g43570 OJ1479_B11.10,Os08g0549200 OSNPB_080549200 ENOG411DURR Q93ZV1,Q6DBH4,A0A1P8ANS1,F4IMN2 Q93ZV1_ARATH,Q6DBH4_ARATH,A0A1P8ANS1_ARATH,F4IMN2_ARATH Metal-dependent phosphohydrolase (Uncharacterized protein At1g26160),At2g23820 (Metal-dependent phosphohydrolase),Metal-dependent phosphohydrolase 28695,28381,24075,26936 Metal-dependent phosphohydrolase (Uncharacterized protein At1g26160),At2g23820 (Metal-dependent phosphohydrolase),Metal-dependent phosphohydrolase chloroplast [GO:0009507]; hydrolase activity [GO:0016787],cytosol [GO:0005829]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2028746;,locus:2061421; AT1G26160,AT2G23820 HD domain-containing protein Os01g0641100 protein (cDNA, clone: J100074E09, full insert sequence),Os02g0179100 protein (Putative metal-dependent phosphohydrolase HD domain-containing protein) (cDNA clone:001-017-D05, full insert sequence) B7FAI0,Q6ETL6 B7FAI0_ORYSJ,Q6ETL6_ORYSJ Os01g0641100 OSNPB_010641100,Os02g0179100 Os02g0179100 OSNPB_020179100 P0544B02.15 ENOG411E3X3 A0A1P8B7M9,Q940H2,A0A1P8B7M6,A0A1P8B7P8 A0A1P8B7M9_ARATH,Q940H2_ARATH,A0A1P8B7M6_ARATH,A0A1P8B7P8_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein 20046,26540,20816,30327 Acyl-CoA N-acyltransferases (NAT) superfamily protein transferase activity, transferring acyl groups [GO:0016746],N-acetyltransferase activity [GO:0008080] locus:505006501; AT4G19985 Acetyltransferase (GNAT) family Os05g0516300 protein (cDNA clone:J013099I21, full insert sequence) Q0DGR5 Q0DGR5_ORYSJ Os05g0516300 Os05g0516300 OSNPB_050516300 ENOG411E55T UNE11 O81309 O81309_ARATH At4g00080 (F6N15.9 protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At4g00080) 23975 At4g00080 (F6N15.9 protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At4g00080) enzyme inhibitor activity [GO:0004857]; double fertilization forming a zygote and endosperm [GO:0009567] locus:2126916; AT4G00080 PMEI NA NA NA NA NA NA NA ENOG411E55W Q8GY72 Q8GY72_ARATH At5g03050 (Knotted 1-binding protein) (Uncharacterized protein At5g03050/F15A17_80) 16068 At5g03050 (Knotted 1-binding protein) (Uncharacterized protein At5g03050/F15A17_80) locus:2143518; AT5G03050 NA Os03g0108700 protein Q0DVX1 Q0DVX1_ORYSJ Os03g0108700 OSNPB_030108700 ENOG411DURY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Glycine-rich protein Os04g0493300 protein (Fragment),Os02g0606000 protein (Fragment) Q0JC40,A0A0N7KJA4,A0A0P0VLH7 Q0JC40_ORYSJ,A0A0N7KJA4_ORYSJ,A0A0P0VLH7_ORYSJ Os04g0493300 Os04g0493300 OSNPB_040493300,Os04g0493300 OSNPB_040493300,Os02g0606000 OSNPB_020606000 ENOG411DURX A1L4V7,A0A1I9LSI2,A0A1I9LSI1,A0A1I9LSI3 DCYD2_ARATH,A0A1I9LSI2_ARATH,A0A1I9LSI1_ARATH,A0A1I9LSI3_ARATH D-cysteine desulfhydrase 2, mitochondrial (EC 4.4.1.15) (AtD-CDes1) (D-CDes1),Pyridoxal-5'-phosphate-dependent enzyme family protein FUNCTION: Catalyzes the production of hydrogen sulfide (H2S) from cysteine. Can accept both D-cysteine and L-cysteine as substrate. {ECO:0000269|Ref.6}. 4.4.1.15 47430,33723,38082,42327 D-cysteine desulfhydrase 2, mitochondrial (EC 4.4.1.15) (AtD-CDes1) (D-CDes1),Pyridoxal-5'-phosphate-dependent enzyme family protein mitochondrion [GO:0005739]; D-cysteine desulfhydrase activity [GO:0019148]; L-cysteine desulfhydrase activity [GO:0080146]; cysteine catabolic process [GO:0009093] locus:2090345; AT3G26115 NA Putative D-cysteine desulfhydrase 2, mitochondrial (EC 4.4.1.15) (OsD-CDes2) (D-CDes2),Os01g0695600 protein B9EYZ1,A0A0P0V6W8 DCYD2_ORYSJ,A0A0P0V6W8_ORYSJ Os01g0695600 LOC_Os01g50060 OsJ_03112 P0431H09.32,Os01g0695600 OSNPB_010695600 FUNCTION: Catalyzes the production of hydrogen sulfide (H2S) from cysteine. ENOG411E55S MTACP1 P53665 ACPM1_ARATH Acyl carrier protein 1, mitochondrial (MtACP-1) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity). May be involved in the synthesis of short and medium chain fatty acids. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain (By similarity). {ECO:0000250}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. R-ATH-389661;R-ATH-77289; 13718 Acyl carrier protein 1, mitochondrial (MtACP-1) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; respiratory chain [GO:0070469]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; fatty acid biosynthetic process [GO:0006633]; lipid A biosynthetic process [GO:0009245]; oxidation-reduction process [GO:0055114] locus:2042331; AT2G44620 Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein Q8GVH7 Q8GVH7_ORYSJ P0592C06.130 Os07g0222800 OsJ_23576 OSNPB_070222800 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E55I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAUR family Os02g0769100 protein (cDNA clone:002-135-F02, full insert sequence) Q6ZGJ3 Q6ZGJ3_ORYSJ Os02g0769100 OJ1079_F11.8 OJ1767_D02.23 OSNPB_020769100 ENOG411DUR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EM58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cyclic nucleotide-gated ion channel Os06g0207700 protein (cDNA, clone: J065216G16, full insert sequence),Os02g0773400 protein (Putative cyclic nucleotide-binding transporter 1) A3B9H5,Q6ZHE3 A3B9H5_ORYSJ,Q6ZHE3_ORYSJ Os06g0207700 OsJ_20533 OSNPB_060207700,Os02g0773400 OJ1611_C08.28 OSNPB_020773400 ENOG411EM54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Response regulator receiver domain NA NA NA NA NA NA NA ENOG411EM57 ARR22 Q9M8Y4 ARR22_ARATH Two-component response regulator ARR22 There are no detectable phenotypic differences between this mutant and wild-type plants grown under normal conditions,There are no consistently detectable phenotypic differences between this double mutant and wild-type plants grown under normal conditions.,This mutant does not have any defects in vegetative development. Careful examinations of arr22-2 and wild type plants reveal no noticeable difference in chalazal cell morphology or size embryonic development silique dry weight or silique inorganic ion carbohydrate or amino acid content.,This mutant does not have any defects in vegetative development. Careful examinations of arr22-3 and wild type plants reveal no noticeable difference in chalazal cell morphology or size embryonic development silique dry weight or silique inorganic ion carbohydrate or amino acid content. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling (By similarity). {ECO:0000250, ECO:0000269|PubMed:14973166}. 15792 Two-component response regulator ARR22 cytoplasm [GO:0005737]; nucleus [GO:0005634]; phosphohistidine phosphatase activity [GO:0008969]; phosphorelay response regulator activity [GO:0000156]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2102960; AT3G04280 REC NA NA NA NA NA NA NA ENOG411EM56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EM51 ETR1 P49333 ETR1_ARATH Ethylene receptor 1 (AtETR1) (EC 2.7.13.3) (Protein ETHYLENE RESPONSE 1) (Protein ETR1) DISRUPTION PHENOTYPE: No visible phenotype in ethylene response; due to redundancy with ERS1. Ers1 and etr1 double mutants display a constitutive ethylene-response phenotype. {ECO:0000269|PubMed:17224067}. In blue light the mutant has a shorter hypocotyl than in wild type but shows a clear sensitivity to cytokinins.,In darkness the mutant is resistant to cytokinins (only small decrease in hypocotyl length).,The mutant was the most sensitive to high salt (NaCl) and osmotic (mannitol) stress in both germination rate and percentage of germinating seedlings turning green.,The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance.,Ethylene insensitive. Lacks triple-response phenotype when grown in the presence of ethylene.,Increased number of lateral roots. Reduced acropetal auxin transport.,Weak ethylene-insensitivity of etr1-2 is suppressed by rte1-2. Ethylene responses are similar to those of the wild type. Sensitive to ethylene-P. Larsen-2002 FUNCTION: Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling (PubMed:15466228, PubMed:15703053). In the presence of ethylene, the auto-kinase activity of ETR1 is inhibited and the non-phosphorylated kinase domain binds tightly to the corresponding domain of EIN2 (PubMed:20591837). {ECO:0000269|PubMed:15466228, ECO:0000269|PubMed:15703053, ECO:0000269|PubMed:20591837}. 2.7.13.3; 2.7.13.3 82566 Ethylene receptor 1 (AtETR1) (EC 2.7.13.3) (Protein ETHYLENE RESPONSE 1) (Protein ETR1) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ethylene binding [GO:0051740]; ethylene receptor activity [GO:0038199]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; phosphorelay sensor kinase activity [GO:0000155]; protein histidine kinase activity [GO:0004673]; cell division [GO:0051301]; cellular response to iron ion [GO:0071281]; cytokinin metabolic process [GO:0009690]; defense response [GO:0006952]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; detection of ethylene stimulus [GO:0009727]; hydrogen peroxide biosynthetic process [GO:0050665]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; regulation of seedling development [GO:1900140]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to heat [GO:0009408]; response to insect [GO:0009625]; response to molecule of bacterial origin [GO:0002237]; response to salt stress [GO:0009651]; sugar mediated signaling pathway [GO:0010182]; vasculature development [GO:0001944] TISSUE SPECIFICITY: Leaves, roots, stems, seedlings, flowers, anthers, carpels and ovules. {ECO:0000269|PubMed:9707532}. locus:2201552; AT1G66340 Ethylene receptor NA NA NA NA NA NA NA ENOG411EM5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJV T32N4.14 Q9S9T1 Q9S9T1_ARATH AT4g05070 protein (T32N4.14 protein) (Uncharacterized protein At4g05070) (Wound-responsive family protein) 9307 AT4g05070 protein (T32N4.14 protein) (Uncharacterized protein At4g05070) (Wound-responsive family protein) locus:2138411; AT4G05070 Wound-induced protein NA NA NA NA NA NA NA ENOG411EHJI Q8GY06 Q8GY06_ARATH At5g57785 8489 At5g57785 response to karrikin [GO:0080167] locus:505006697; AT5G57785 NA NA NA NA NA NA NA NA ENOG411EHJA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: coiled-coil domain containing 113 NA NA NA NA NA NA NA ENOG411EHJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9EX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os02g0285900 protein,Os02g0286000 protein Q6KA60,A0A0P0VHQ0 Q6KA60_ORYSJ,A0A0P0VHQ0_ORYSJ Os02g0285900 OJ1115_D03.26 OSNPB_020285900,Os02g0286000 OSNPB_020286000 ENOG411E9EQ GGPPS9,GGPP3,GGPS3 Q9LRR0,Q9LIA0,Q9LUE1,Q9LHR4,Q9LUD9,A0A1I9LQ60 GGPP8_ARATH,GGPPB_ARATH,GGPP9_ARATH,GGPPC_ARATH,GGPP3_ARATH,A0A1I9LQ60_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic (GGPP synthase 8) (GGPS8) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 8) (Dimethylallyltranstransferase 8) (EC 2.5.1.1) (Farnesyl diphosphate synthase 8) (Farnesyltranstransferase 8) (EC 2.5.1.29) (Geranyltranstransferase 8) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 11, chloroplastic (GGPP synthase 11) (GGPS11) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 11) (Dimethylallyltranstransferase 11) (EC 2.5.1.1) (Farnesyl diphosphate synthase 11) (Farnesyltranstransferase 11) (EC 2.5.1.29) (Geranyltranstransferase 11) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 9, chloroplastic (GGPP synthase 9) (GGPS9) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 9) (Dimethylallyltranstransferase 9) (EC 2.5.1.1) (Farnesyl diphosphate synthase 9) (Farnesyltranstransferase 9) (EC 2.5.1.29) (Geranyltranstransferase 9) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 12, chloroplastic (GGPP synthase 12) (GGPS12) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 12) (Dimethylallyltranstransferase 12) (EC 2.5.1.1) (Farnesyl diphosphate synthase 12) (Farnesyltranstransferase 12) (EC 2.5.1.29) (Geranyltranstransferase 12) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 3, chloroplastic (GGPP synthase 3) (GGPS3) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 3) (Dimethylallyltranstransferase 3) (EC 2.5.1.1) (Farnesyl diphosphate synthase 3) (Farnesyltranstransferase 3) (EC 2.5.1.29) (Geranyltranstransferase 3) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 3 FUNCTION: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. {ECO:0000250}.,FUNCTION: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. PATHWAY: Isoprenoid biosynthesis; farnesyl diphosphate biosynthesis; farnesyl diphosphate from geranyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranyl diphosphate biosynthesis; geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranylgeranyl diphosphate biosynthesis; geranylgeranyl diphosphate from farnesyl diphosphate and isopentenyl diphosphate: step 1/1. ARA:AT3G14510-MONOMER;,ARA:AT3G14530-MONOMER;,ARA:AT3G32040-MONOMER;,MetaCyc:AT3G14550-MONOMER; 2.5.1.-; 2.5.1.1; 2.5.1.29; 2.5.1.10 38896,38502,38673,38936,38844,38892 Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic (GGPP synthase 8) (GGPS8) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 8) (Dimethylallyltranstransferase 8) (EC 2.5.1.1) (Farnesyl diphosphate synthase 8) (Farnesyltranstransferase 8) (EC 2.5.1.29) (Geranyltranstransferase 8) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 11, chloroplastic (GGPP synthase 11) (GGPS11) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 11) (Dimethylallyltranstransferase 11) (EC 2.5.1.1) (Farnesyl diphosphate synthase 11) (Farnesyltranstransferase 11) (EC 2.5.1.29) (Geranyltranstransferase 11) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 9, chloroplastic (GGPP synthase 9) (GGPS9) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 9) (Dimethylallyltranstransferase 9) (EC 2.5.1.1) (Farnesyl diphosphate synthase 9) (Farnesyltranstransferase 9) (EC 2.5.1.29) (Geranyltranstransferase 9) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 12, chloroplastic (GGPP synthase 12) (GGPS12) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 12) (Dimethylallyltranstransferase 12) (EC 2.5.1.1) (Farnesyl diphosphate synthase 12) (Farnesyltranstransferase 12) (EC 2.5.1.29) (Geranyltranstransferase 12) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 3, chloroplastic (GGPP synthase 3) (GGPS3) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 3) (Dimethylallyltranstransferase 3) (EC 2.5.1.1) (Farnesyl diphosphate synthase 3) (Farnesyltranstransferase 3) (EC 2.5.1.29) (Geranyltranstransferase 3) (EC 2.5.1.10),Geranylgeranyl pyrophosphate synthase 3 chloroplast [GO:0009507]; intracellular [GO:0005622]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386]; isoprenoid biosynthetic process [GO:0008299],chloroplast [GO:0009507]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386],transferase activity [GO:0016740]; isoprenoid biosynthetic process [GO:0008299] TISSUE SPECIFICITY: Mainly expressed in roots. {ECO:0000269|PubMed:10759500}. locus:2093832;,locus:2089626;,locus:2079028; AT3G14510,AT3G29430,AT3G14530,AT3G32040,AT3G14550 Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate (By similarity) NA NA NA NA NA NA NA ENOG411E9EP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9ES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9ER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411E9EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol-4-phosphate 5-Kinase NA NA NA NA NA NA NA ENOG411E9EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E9EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411E9EH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411E9EK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain BTB/POZ domain containing protein (Os10g0435400 protein),BTB/POZ domain containing protein (Os10g0434650 protein),Os10g0434999 protein,Os10g0434200 protein,Os10g0434000 protein,Os10g0435100 protein,Os10g0435300 protein (Fragment),Os10g0435900 protein (Fragment),Os10g0436100 protein (Fragment) Q7XE71,Q7XE76,A3C513,B9G5V7,B9G5V6,A0A0P0XV49,A0A0P0XUI3,A0A0P0XUH8,A0A0P0XUZ3 Q7XE71_ORYSJ,Q7XE76_ORYSJ,A3C513_ORYSJ,B9G5V7_ORYSJ,B9G5V6_ORYSJ,A0A0P0XV49_ORYSJ,A0A0P0XUI3_ORYSJ,A0A0P0XUH8_ORYSJ,A0A0P0XUZ3_ORYSJ LOC_Os10g29850 Os10g0435400 OsJ_31629 OSNPB_100435400,Os10g0434650 LOC_Os10g29790 OSNPB_100434650,Os10g0434999 OsJ_31627 OSNPB_100434999,Os10g0434200 OsJ_31626 OSNPB_100434200,Os10g0434000 OsJ_31625 OSNPB_100434000,Os10g0435100 OSNPB_100435100,Os10g0435300 OSNPB_100435300,Os10g0435900 OSNPB_100435900,Os10g0436100 OSNPB_100436100 ENOG411E9EJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9EM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os06g0720400 protein (Os06g0722100 protein),Os06g0719600 protein,Os06g0721700 protein (Os06g0723525 protein),Expressed protein (Os10g0458300 protein) (cDNA clone:002-146-D04, full insert sequence),Os06g0489900 protein,Os06g0720400 protein (Os06g0722100 protein) (Os06g0722450 protein) (Os06g0722700 protein) (Os06g0723900 protein),Os06g0720700 protein (cDNA, clone: J090060J22, full insert sequence),Os05g0548700 protein,Os06g0718700 protein,Os10g0458200 protein,Os05g0332250 protein,Os06g0720800 protein Q5YM04,Q5Z8M4,A0A0P0X1F3,Q337N4,Q656D5,Q5YM05,Q5Z4G6,A0A0P0WPY0,A0A0P0X1J8,A0A0P0XVC9,A0A0N7KKK0,A0A0P0X156 Q5YM04_ORYSJ,Q5Z8M4_ORYSJ,A0A0P0X1F3_ORYSJ,Q337N4_ORYSJ,Q656D5_ORYSJ,Q5YM05_ORYSJ,Q5Z4G6_ORYSJ,A0A0P0WPY0_ORYSJ,A0A0P0X1J8_ORYSJ,A0A0P0XVC9_ORYSJ,A0A0N7KKK0_ORYSJ,A0A0P0X156_ORYSJ P0535F09.9-2 Os06g0722100 P0535F09.13-2 P0535F09.30-2 P0535F09.5-2 Os06g0720400 OSJNBa0076I16.22-2 OSJNBa0076I16.40-2 OSNPB_060722100,P0541C02.38-1 Os06g0719600 OSJNBa0076I16.15-1 OSNPB_060719600,Os06g0721700 Os06g0723525 OSNPB_060721700 OSNPB_060723525,Os10g0458300 LOC_Os10g32020 Os10g0458300 OSNPB_100458300,Os06g0489900 OsJ_21408 OSNPB_060489900 P0664F03.2,P0535F09.9-1 Os06g0720400 Os06g0722450 Os06g0722700 Os06g0723900 P0535F09.13-1 P0535F09.30-1 P0535F09.5-1 Os06g0722100 OSJNBa0076I16.22-1 OSJNBa0076I16.40-1 OSNPB_060720400 OSNPB_060722450 OSNPB_060722700 OSNPB_060723900,Os06g0720700 OSJNBa0076I16.25-1 OSNPB_060720700,Os05g0548700 OSNPB_050548700,Os06g0718700 OSNPB_060718700,Os10g0458200 OSNPB_100458200,Os05g0332250 OSNPB_050332250,Os06g0720800 OSNPB_060720800 ENOG411E9EN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone deacetylase domain NA NA NA NA NA NA NA ENOG411E9EA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411E9EC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Dirigent protein Q2QWD7,Q306J3,A0A0P0Y810 Q2QWD7_ORYSJ,Q306J3_ORYSJ,A0A0P0Y810_ORYSJ Os12g0198700 LOC_Os12g09700 Os12g0198700 OsJ_35533 OSNPB_120198700,JAC1 LOC_Os12g14440 Os12g0247700 OsJ_35712 OSNPB_120247700,Os12g0199000 OSNPB_120199000 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E9EB O22940 O22940_ARATH At2g41800/T11A7.10 (Uncharacterized protein At2g41800) 40370 At2g41800/T11A7.10 (Uncharacterized protein At2g41800) cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; negative regulation of unidimensional cell growth [GO:0051511]; regulation of cell wall pectin metabolic process [GO:1902066] locus:2054336; AT2G41800 EXPRESSED DURING 4 anthesis C globular stage petal differentiation and expansion stage NA NA NA NA NA NA NA ENOG411E9EE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E9ED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetohydroxy acid isomeroreductase catalytic domain NA NA NA NA NA NA NA ENOG411E9EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-binding cassette transporter subfamily C member NA NA NA NA NA NA NA ENOG411EHJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nuclear receptor binding SET domain protein 1 NA NA NA NA NA NA NA ENOG411EHJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: peptidase' NA NA NA NA NA NA NA ENOG411EHJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9E1 A0A1P8B9E3,F4KCX4 A0A1P8B9E3_ARATH,F4KCX4_ARATH SWIB/MDM2, Plus-3 and GYF domain-containing protein 52130,48376 SWIB/MDM2, Plus-3 and GYF domain-containing protein DNA binding [GO:0003677] locus:2154473; AT5G23480 Plus-3 domain NA NA NA NA NA NA NA ENOG411E9E0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9E3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LrgB-like family NA NA NA NA NA NA NA ENOG411E9E2 CPK15,CPK21,CPK23 O49717,Q9ZSA2,Q9M101,F4JGW8,A0A1P8B8Z1,F4JKC7 CDPKF_ARATH,CDPKL_ARATH,CDPKN_ARATH,F4JGW8_ARATH,A0A1P8B8Z1_ARATH,F4JKC7_ARATH Calcium-dependent protein kinase 15 (EC 2.7.11.1),Calcium-dependent protein kinase 21 (EC 2.7.11.1),Calcium-dependent protein kinase 23 (EC 2.7.11.1),Calcium-dependent protein kinase 23,Calcium-dependent protein kinase 15 DISRUPTION PHENOTYPE: Mutant cpk23-1 shows greatly enhanced tolerance to drought and salt stresses and displays reduced stomatal aperture and reduced K(+) content. {ECO:0000269|PubMed:17541706}. Resistant to hyperosmotic stress-T. Romeis-2011 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Mediates the phosphorylation and activation of the S-type anion efflux channel SLAC1. {ECO:0000269|PubMed:20385816}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. Could act as a calcium sensor involved in drought- and salt stress-induced calcium signaling cascades. Mediates the phosphorylation and activation of the S-type anion efflux channel SLAC1. {ECO:0000269|PubMed:17541706, ECO:0000269|PubMed:20385816}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1; 2.7.11.1 62575,59894,58654,59803,55634,63345 Calcium-dependent protein kinase 15 (EC 2.7.11.1),Calcium-dependent protein kinase 21 (EC 2.7.11.1),Calcium-dependent protein kinase 23 (EC 2.7.11.1),Calcium-dependent protein kinase 23,Calcium-dependent protein kinase 15 cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; protein phosphatase binding [GO:0019903]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; protein phosphatase binding [GO:0019903]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672]; response to cadmium ion [GO:0046686],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672] locus:2138897;,locus:2138917;,locus:2141697; AT4G21940,AT4G04720,AT4G04740 calcium-dependent protein kinase 15 NA NA NA NA NA NA NA ENOG411E9E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411EFBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0704450 protein (Fragment),Os05g0188750 protein (Fragment),Os04g0670150 protein (Fragment),Os01g0180050 protein (Fragment),Os03g0795350 protein (Fragment) A0A0P0X0P8,A0A0N7KK99,A0A0P0WG37,A0A0P0UZ54,A0A0P0W4Q8 A0A0P0X0P8_ORYSJ,A0A0N7KK99_ORYSJ,A0A0P0WG37_ORYSJ,A0A0P0UZ54_ORYSJ,A0A0P0W4Q8_ORYSJ Os06g0704450 OSNPB_060704450,Os05g0188750 OSNPB_050188750,Os04g0670150 OSNPB_040670150,Os01g0180050 OSNPB_010180050,Os03g0795350 OSNPB_030795350 ENOG411EFBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411DRA2 LOH1 Q67XL4,A0A1I9LR52,A8MSD6 Y3544_ARATH,A0A1I9LR52_ARATH,A8MSD6_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic,RNA-binding CRS1 / YhbY (CRM) domain protein 51475,33622,44486 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic,RNA-binding CRS1 / YhbY (CRM) domain protein chloroplast [GO:0009507]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2094438; AT3G25440 CRS1_YhbY NA NA NA NA NA NA NA ENOG411DRAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Momilactone A Momilactone A synthase (OsMAS) (EC 1.1.1.295),OJ000315_02.17 protein (Os04g0405300 protein) (cDNA clone:002-170-B08, full insert sequence),Os04g0179100 protein (Fragment) Q7FAE1,Q7XL00,A0A0P0W7F3 MOMAS_ORYSJ,Q7XL00_ORYSJ,A0A0P0W7F3_ORYSJ Os04g0179200 LOC_Os04g10010 OsJ_13988 OSJNBa0052P16.9,OJ000315_02.17 Os04g0405300 OSNPB_040405300,Os04g0179100 OSNPB_040179100 FUNCTION: Involved in momilactone phytoalexins biosynthesis. Catalyzes the last step of momilactone A biosynthesis. {ECO:0000269|PubMed:17872948}. MISCELLANEOUS: The phytoalexins momilactones A and B are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation). Momilactone B can also act as an allochemical (an antimicrobial and allelopathic agent), being constitutively produced in the root of the plant and secreted to the rhizosphere where it suppresses the growth of neighboring plants and soil microorganisms. ENOG411DRAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DRAF MRG21.7 Q940R3 Q940R3_ARATH AT5g62650/MRG21_7 (Tic22-like family protein) 58717 AT5g62650/MRG21_7 (Tic22-like family protein) locus:2172234; AT5G62650 Tic22-like family Os01g0225300 protein A0A0P0UZY1 A0A0P0UZY1_ORYSJ Os01g0225300 OSNPB_010225300 ENOG411DRAQ LUL4,LUL3 Q8LA32,Q84ME1 LUL4_ARATH,LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL4 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL4) (Protein LOG2-LIKE UBIQUITIN LIGASE 4) (RING finger protein 208),Probable E3 ubiquitin-protein ligase LUL3 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL3) (Protein LOG2-LIKE UBIQUITIN LIGASE 3) (RING finger protein 398) FUNCTION: Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro). {ECO:0000269|PubMed:22291198}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 41005,42309 Probable E3 ubiquitin-protein ligase LUL4 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL4) (Protein LOG2-LIKE UBIQUITIN LIGASE 4) (RING finger protein 208),Probable E3 ubiquitin-protein ligase LUL3 (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase LUL3) (Protein LOG2-LIKE UBIQUITIN LIGASE 3) (RING finger protein 398) metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] locus:2082440;,locus:2179594; AT3G06140,AT5G19080 RING finger protein Os05g0397650 protein A0A0P0WLY2 A0A0P0WLY2_ORYSJ Os05g0397650 OSNPB_050397650 ENOG411DRAP UBP15 Q9FPS9,F4I642 UBP15_ARATH,F4I642_ARATH Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.4.19.12) (Deubiquitinating enzyme 15) (AtUBP15) (Ubiquitin thioesterase 15) (Ubiquitin-specific-processing protease 15),Ubiquitin-specific protease 15 ubp15-1 mutants exhibit several anatomical defects related to leaf root flower stem and silique development. Notably rosette leaves are narrow and serrated. An examination of ubp15-1 leaf cross-sections reveals a reduction in the number of adaxial epidermal and palisade cells spanning the width of the leaf. ubp15-1 mutant leaves also have fewer spongy cell layers than wild type leaves. The aberrant phenotype of this mutant is exacerbated when it is crossed with ubp16-1. Dwarf; Few, narrow, serrated rosette leaves; Short roots; Short, thin inflorescence stems; Small flowers; Reduced fertility; Early flowering-X. Deng-2008 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT1G17110-MONOMER; 3.4.19.12 103677,104063 Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.4.19.12) (Deubiquitinating enzyme 15) (AtUBP15) (Ubiquitin thioesterase 15) (Ubiquitin-specific-processing protease 15),Ubiquitin-specific protease 15 integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; cell proliferation [GO:0008283]; flower development [GO:0009908]; fruit development [GO:0010154]; leaf development [GO:0048366]; protein deubiquitination [GO:0016579]; root development [GO:0048364]; shoot system development [GO:0048367]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2020412; AT1G17110 ubiquitin carboxyl-terminal hydrolase Os02g0244300 protein Q0E2F9 Q0E2F9_ORYSJ Os02g0244300 Os02g0244300 OSNPB_020244300 ENOG411DRAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flavonoid 3'-monooxygenase-like Os09g0441100 protein (Putative cytochrome P450 monooxygenase CYP92A1) (cDNA clone:002-130-E07, full insert sequence),Os09g0264400 protein (Putative elicitor-inducible cytochrome P450) (cDNA clone:J023145F09, full insert sequence),Os09g0263933 protein,Os09g0441400 protein (Putative elicitor-inducible cytochrome P450),Os09g0441600 protein,Os09g0441700 protein,Os09g0264051 protein (Fragment) Q69P77,Q67TM1,A3BWN0,Q69P73,A0A0N7KQV8,A0A0P0XMS3,A0A0P0XJ71 Q69P77_ORYSJ,Q67TM1_ORYSJ,A3BWN0_ORYSJ,Q69P73_ORYSJ,A0A0N7KQV8_ORYSJ,A0A0P0XMS3_ORYSJ,A0A0P0XJ71_ORYSJ Os09g0441100 Os09g0441100 OJ1344_B01.34 OSNPB_090441100,Os09g0264400 Os09g0264400 B1097H10.9 OsJ_28589 OSNPB_090264400,Os09g0263933 OsJ_28590 OSNPB_090263933,Os09g0441400 OJ1344_B01.40 OSNPB_090441400 P0046G12.6,Os09g0441600 OSNPB_090441600,Os09g0441700 OSNPB_090441700,Os09g0264051 OSNPB_090264051 ENOG411DRAU LTO1 Q8L540,A0A1P8B950 LTO1_ARATH,A0A1P8B950_ARATH Thiol-disulfide oxidoreductase LTO1 (EC 1.1.4.-) (Protein LUMEN THIOL OXIDOREDUCTASE 1) (Vitamin K reductase),NAD(P)H dehydrogenase (Quinone)s DISRUPTION PHENOTYPE: Severe growth defects due to a limitation in the electron flow from PSII. {ECO:0000269|PubMed:22209765, ECO:0000269|PubMed:23689258}. FUNCTION: Thiol-disulfide oxidoreductase catalyzing disulfide bond formation of chloroplast proteins and involved in redox regulation and photosynthetic electron transport. Required for the assembly of photosystem II (PSII) through the formation of disulfide bond in PSBO, a subunit of the PSII oxygen-evolving complex in the thylakoid lumen. Involved in the formation of disulfide bonds in the lumenal protein FKBP13. In vitro, reduces phylloquinone (vitamin K1) and menaquinone (vitamin K2) to their respective quinol. Cannot reduce phylloquinone epoxide to phylloquinone (PubMed:20626653, PubMed:21781282, PubMed:22209765, PubMed:23689258). Plays an important role in regulating the thylakoid lumen redox (PubMed:25412899). {ECO:0000269|PubMed:20626653, ECO:0000269|PubMed:21781282, ECO:0000269|PubMed:22209765, ECO:0000269|PubMed:23689258, ECO:0000269|PubMed:25412899}. 1.1.4.- 40401,41288 Thiol-disulfide oxidoreductase LTO1 (EC 1.1.4.-) (Protein LUMEN THIOL OXIDOREDUCTASE 1) (Vitamin K reductase),NAD(P)H dehydrogenase (Quinone)s chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; NAD(P)H dehydrogenase (quinone) activity [GO:0003955]; quinone binding [GO:0048038]; photosystem II assembly [GO:0010207],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in cotyledons, rosette leaves, stems, cauline leaves and flowers. {ECO:0000269|PubMed:20626653}. locus:2128028; AT4G35760 Vitamin K epoxide reductase family Expressed protein (Os03g0131500 protein) (cDNA clone:002-146-G02, full insert sequence) Q10S76 Q10S76_ORYSJ LOC_Os03g03949 Os03g0131500 OSNPB_030131500 ENOG411DVV1 AT5G01250.1,T16O11.2,AT2G38152.1 F4IS00,Q9LFB1,Q9C949,Q9S790,F4IS01,A0A1P8APP1 F4IS00_ARATH,Q9LFB1_ARATH,Q9C949_ARATH,Q9S790_ARATH,F4IS01_ARATH,A0A1P8APP1_ARATH Alpha 1,4-glycosyltransferase family protein (Glycosyltransferase),Alpha 1,4-glycosyltransferase family protein (At5g01250) (Uncharacterized protein At5g01250) (Uncharacterized protein F7J8_230),Alpha 1,4-glycosyltransferase family protein (Glycosyltransferase) (Uncharacterized protein T7P1.18),Alpha 1,4-glycosyltransferase family protein (Glycosyltransferase) (MZB10.5 protein) (T16O11.2 protein),Alpha 1,4-glycosyltransferase family protein ARA:AT1G61050-MONOMER; 46259,46396,49965,46852,43259,50096 Alpha 1,4-glycosyltransferase family protein (Glycosyltransferase),Alpha 1,4-glycosyltransferase family protein (At5g01250) (Uncharacterized protein At5g01250) (Uncharacterized protein F7J8_230),Alpha 1,4-glycosyltransferase family protein (Glycosyltransferase) (Uncharacterized protein T7P1.18),Alpha 1,4-glycosyltransferase family protein (Glycosyltransferase) (MZB10.5 protein) (T16O11.2 protein),Alpha 1,4-glycosyltransferase family protein integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2042897;,locus:2150104;,locus:2206006;,locus:2095264;,locus:4010713690; AT2G38150,AT5G01250,AT1G61050,AT3G09020,AT2G38152 alpha 14-glycosyltransferase family protein Os04g0529700 protein (cDNA clone:J033030P20, full insert sequence) Q0JBJ1 Q0JBJ1_ORYSJ Os04g0529700 Os04g0529700 OsJ_15553 OSNPB_040529700 ENOG411DVVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os01g0859200 protein (Putative hydrolase) (cDNA clone:001-041-F10, full insert sequence) (cDNA clone:J023038D03, full insert sequence) (cDNA clone:J023147H18, full insert sequence) Q94DD0 Q94DD0_ORYSJ Os01g0859200 OSNPB_010859200 P0489B03.7 P0683F02.35 ENOG411DVVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q2RAM8 Q2RAM8_ORYSJ Os11g0145200 LOC_Os11g04860 Os11g0145200 OsJ_32945 OSNPB_110145200 ENOG411DVVY EIP9 Q9FMF3,F4KDM3 Q9FMF3_ARATH,F4KDM3_ARATH AT5G64360 protein (At5g64360) (Chaperone DnaJ-domain superfamily protein) (Emb|CAB89376.1) (Uncharacterized protein At5g64360),Chaperone DnaJ-domain superfamily protein 50473,45862 AT5G64360 protein (At5g64360) (Chaperone DnaJ-domain superfamily protein) (Emb|CAB89376.1) (Uncharacterized protein At5g64360),Chaperone DnaJ-domain superfamily protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; regulation of flower development [GO:0009909] locus:2173443; AT5G64360 DnaJ domain NA NA NA NA NA NA NA ENOG411DVVZ CYP85A1,CYP85A2 Q9FMA5,Q940V4 C85A1_ARATH,C85A2_ARATH Cytochrome P450 85A1 (EC 1.14.-.-) (Brassinosteroid-6-oxidase 1) (BR6ox 1) (C6-oxidase 1),Cytochrome P450 85A2 (EC 1.14.-.-) (Brassinosteroid-6-oxidase 2) (BR6ox 2) (C6-oxidase 2) grew similary to WT plants throughout the life of the plant,weak dwarf phenotype during early vegetative development and a reduced fertility after bolting although the final plant height appears normal Slightly smaller seedlings; Slightly shorter inflorescence stems; Rounded, curled, dark green leaves; Short petioles; Abnormal cauline leaf and stamen formation; Reduced fertility-S. Kim-2005 FUNCTION: Catalyzes the C6-oxidation step in brassinosteroids biosynthesis. Converts 6-deoxocastasterone to castasterone. May also convert 6-deoxoteasterone to teasterone, 3-dehydro-6-deoxoteasterone to 3-dehydroteasterone, and 6-deoxotyphasterol to typhasterol. {ECO:0000269|PubMed:11402205, ECO:0000269|PubMed:12529536}.,FUNCTION: Catalyzes the C6-oxidation step in brassinosteroids biosynthesis. Converts 6-deoxocastasterone to castasterone, and castasterone to brassinolide. May also convert 6-deoxoteasterone to teasterone, 3-dehydro-6-deoxoteasterone to 3-dehydroteasterone, and 6-deoxotyphasterol to typhasterol. {ECO:0000269|PubMed:12529536}. PATHWAY: Plant hormone biosynthesis; brassinosteroid biosynthesis. ARA:AT5G38970-MONOMER;MetaCyc:AT5G38970-MONOMER;,ARA:AT3G30180-MONOMER;MetaCyc:AT3G30180-MONOMER; R-ATH-211916;R-ATH-5365859; 1.14.-.- 53767,53815 Cytochrome P450 85A1 (EC 1.14.-.-) (Brassinosteroid-6-oxidase 1) (BR6ox 1) (C6-oxidase 1),Cytochrome P450 85A2 (EC 1.14.-.-) (Brassinosteroid-6-oxidase 2) (BR6ox 2) (C6-oxidase 2) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] TISSUE SPECIFICITY: Mainly expressed in apical shoots, siliques and roots. {ECO:0000269|PubMed:12529536}.,TISSUE SPECIFICITY: Expressed in stems, leaves, siliques, shoots, and roots, with a higher expression in apical shoots. {ECO:0000269|PubMed:12529536}. locus:2152292;,locus:2098802; AT5G38970,AT3G30180 cytochrome P450 Cytochrome P450 85A1 (EC 1.14.-.-) (C6-oxidase) (Dwarf protein) (OsDWARF) Q8GSQ1 C85A1_ORYSJ CYP85A1 DWARF Os03g0602300 LOC_Os03g40540 OJ1519_A12.12 OsJNBa0015G17.1 DISRUPTION PHENOTYPE: Plants show a range of abnormalities in organ development and growth, with deficiency in the elongation of the stem and leaves, skotomorphogenesis, root differentiation and reproductive growth. Treatment with exogenous brassinolide rescues the abnormal phenotype. {ECO:0000269|PubMed:12427982, ECO:0000269|PubMed:12445121}. FUNCTION: May convert 6-deoxoteasterone to teasterone, 3-dehydro-6-deoxoteasterone to 3-dehydroteasterone, and 6-deoxotyphasterol to typhasterol. Catalyzes the C6-oxidation step in brassinosteroids biosynthesis. Involved in the organization and elongation of the leaf and stem cells. {ECO:0000269|PubMed:12427982, ECO:0000269|PubMed:12445121}. ENOG411EH5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0360300 protein (Fragment) A0A0P0VXN8 A0A0P0VXN8_ORYSJ Os03g0360300 OSNPB_030360300 ENOG411EFT9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EFT8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_CA NA NA NA NA NA NA NA ENOG411EFT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFT4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFT7 dl3605w O23366 O23366_ARATH Uncharacterized protein AT4g15120 (Uncharacterized protein At4g15120/dl3605w) (Uncharacterized protein dl3605w) (VQ motif-containing protein) 20737 Uncharacterized protein AT4g15120 (Uncharacterized protein At4g15120/dl3605w) (Uncharacterized protein dl3605w) (VQ motif-containing protein) locus:2129700; AT4G15120 VQ motif NA NA NA NA NA NA NA ENOG411EFT6 ERF121 Q9FGC9 EF121_ARATH Putative ethylene-responsive transcription factor ERF121 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 17605 Putative ethylene-responsive transcription factor ERF121 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2158123; AT5G67010 AP2 NA NA NA NA NA NA NA ENOG411EFT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein (Os03g0775800 protein) Q8H8M8 Q8H8M8_ORYSJ Os03g0775800 LOC_Os03g56440 OsJ_12777 OSJNBa0070N04.18 OSNPB_030775800 ENOG411EFT0 Q9ZV22 Q9ZV22_ARATH At2g28920 (RING/U-box superfamily protein) (Uncharacterized protein At2g28920) 15869 At2g28920 (RING/U-box superfamily protein) (Uncharacterized protein At2g28920) integral component of membrane [GO:0016021] locus:2053225; AT2G28920 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EFT3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0203150 protein B9FIL3 B9FIL3_ORYSJ Os05g0203150 OsJ_17481 OSNPB_050203150 ENOG411EFTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: antiporter NA NA NA NA NA NA NA ENOG411EFTN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os09g0327575 protein A0A0P0XKQ2 A0A0P0XKQ2_ORYSJ Os09g0327575 OSNPB_090327575 ENOG411EFTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFTE F4IGN8 F4IGN8_ARATH FBD-like domain family protein 33693 FBD-like domain family protein locus:504956091; AT2G27505 FBD NA NA NA NA NA NA NA ENOG411EFTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os12g0508500 protein A0A0P0YAL5 A0A0P0YAL5_ORYSJ Os12g0508500 OSNPB_120508500 ENOG411EFTV CRP4 A8MS52,A8MS76,A8MS80,A8MQ86,A7REH6,A8MRC9,A8MQI9,A8MQY6,A8MS61,A8MRI4,A8MRQ3,A8MSD1,F4KBU9,A8MRQ2,F4K4F5,A8MRD6,A8MQK2,A8MRF5,A8MQ81,A8MQW2,A8MRC5,F4K2Z6,A8MQ80 A8MS52_ARATH,A8MS76_ARATH,A8MS80_ARATH,A8MQ86_ARATH,A7REH6_ARATH,A8MRC9_ARATH,A8MQI9_ARATH,A8MQY6_ARATH,A8MS61_ARATH,A8MRI4_ARATH,A8MRQ3_ARATH,A8MSD1_ARATH,F4KBU9_ARATH,A8MRQ2_ARATH,F4K4F5_ARATH,A8MRD6_ARATH,A8MQK2_ARATH,A8MRF5_ARATH,A8MQ81_ARATH,A8MQW2_ARATH,A8MRC5_ARATH,F4K2Z6_ARATH,A8MQ80_ARATH ECA1 gametogenesis related family protein,Cysteine rich peptide (ECA1 gametogenesis related family protein),ECA1 gametogenesis family protein (DUF1278) 12827,12829,12927,12382,12769,13234,12636,12815,10904,10908,13055,13143,12800,12803,12743,12798,13171,12799,12819,13202,13112 ECA1 gametogenesis related family protein,Cysteine rich peptide (ECA1 gametogenesis related family protein),ECA1 gametogenesis family protein (DUF1278) locus:4010714019;locus:4010714023;,locus:4010714018;locus:4010714022;,locus:4010713801;,locus:4010713990;locus:4010713993;,locus:4010713994;locus:4010713995;locus:4010713997;locus:4010713998;locus:4010713999;locus:4010714000;locus:4010714001;locus:4010714002;locus:4010714003;locus:4010714004;locus:4010714005;locus:4010714006;,locus:4010713876;,locus:4010713652;,locus:4010713991;,locus:4010714014;,locus:4010714015;,locus:4010714017;,locus:4010714064;,locus:504954855;,locus:4010714008;,locus:4010714007;,locus:4010714013;,locus:4010713996;,locus:4010714009;,locus:4010714063;,locus:4010714011;,locus:4010714016;,locus:4010713992;,locus:4010714035; AT5G36662AT5G36739;,AT5G36661AT5G36738;,AT3G42565,AT5G36310AT5G36340;,AT5G36350AT5G36360;AT5G36380;AT5G36390;AT5G36400;AT5G36410;AT5G36420;AT5G36430;AT5G36440;AT5G36450;AT5G36460;AT5G36470;,AT4G09545,AT2G24205,AT5G36320,AT5G36550,AT5G36657,AT5G36659,AT5G60964,AT5G51105,AT5G36490,AT5G36480,AT5G36540,AT5G36370,AT5G36500,AT5G60945,AT5G36520,AT5G36658,AT5G36330,AT5G42895 ECA1 gametogenesis related family protein NA NA NA NA NA NA NA ENOG411EFTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Sec3 NA NA NA NA NA NA NA ENOG411EFTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0110600 protein (Fragment) A0A0P0UX16 A0A0P0UX16_ORYSJ Os01g0110600 OSNPB_010110600 ENOG411EDTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DW5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ABI family member 3 NA NA NA NA NA NA NA ENOG411EHZG A0A1P8B2W4 A0A1P8B2W4_ARATH Uncharacterized protein 25868 Uncharacterized protein NA NA NA NA NA NA NA NA ENOG411EH50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E13Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Probable serine/threonine-protein kinase WNK6 (OsWNK6) (EC 2.7.11.1) (Protein kinase with no lysine 6) Q2RA93 WNK6_ORYSJ WNK6 Os11g0160300 LOC_Os11g06140 OsJ_031733 ENOG411E13X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Squamosa promoter-binding-like protein Squamosa promoter-binding-like protein 11,Squamosa promoter-binding-like protein 4,Os02g0174100 protein Q653Z5,Q6H509,A0A0P0VFE5 SPL11_ORYSJ,SPL4_ORYSJ,A0A0P0VFE5_ORYSJ SPL11 Os06g0663500 LOC_Os06g45310 OsJ_021400 OSJNBb0065C04.42,SPL4 Os02g0174100 LOC_Os02g07780 OSJNBa0073A21.21-1 OSJNBa0073A21.21-2 OSJNBa0073A21.21-3,Os02g0174100 OSNPB_020174100 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411E13S Q93Z25,Q9FXD8,Q9C5M8 PLY22_ARATH,PLY5_ARATH,PLY18_ARATH Probable pectate lyase 22 (EC 4.2.2.2),Probable pectate lyase 5 (EC 4.2.2.2),Probable pectate lyase 18 (EC 4.2.2.2) (Pectate lyase A10) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. ARA:AT5G63180-MONOMER;,ARA:AT4G24780-MONOMER; 4.2.2.2 47895,44886,45014 Probable pectate lyase 22 (EC 4.2.2.2),Probable pectate lyase 5 (EC 4.2.2.2),Probable pectate lyase 18 (EC 4.2.2.2) (Pectate lyase A10) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490],membrane [GO:0016020]; metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Expressed in flowers, but not in leaves. {ECO:0000269|PubMed:9278171}. locus:2161992;,locus:2008550;,locus:2121914; AT5G63180,AT1G67750,AT4G24780 Pectate lyase NA NA NA NA NA NA NA ENOG411E13R PCMP-E69 Q9CA56 PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic 98652 Pentatricopeptide repeat-containing protein At1g74600, chloroplastic chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156] locus:2019130; AT1G74600 Pentatricopeptide repeat-containing protein Os09g0413300 protein Q0J1T8 Q0J1T8_ORYSJ Os09g0413300 OSNPB_090413300 ENOG411E13Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os04g0208600 protein (cDNA clone:J023131H22, full insert sequence) Q0JES4 Q0JES4_ORYSJ Os04g0208600 Os04g0208600 OSNPB_040208600 ENOG411E13P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os12g0184400 protein Q2QWS6 Q2QWS6_ORYSJ Os12g0184400 LOC_Os12g08360 OSNPB_120184400 ENOG411E13W ERF061 Q9C7W2 ERF61_ARATH Ethylene-responsive transcription factor ERF061 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 36564 Ethylene-responsive transcription factor ERF061 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2014185; AT1G64380 Transcription factor Os05g0572000 protein Q65XK9 Q65XK9_ORYSJ OJ1735_C10.9 Os05g0572000 OSNPB_050572000 ENOG411E13V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK Ankyrin repeat-containing protein NPR4 (OsNPR4) A2CIR5 NPR4_ORYSJ NPR4 Os01g0837000 LOC_Os01g61990 P0506B12.37 FUNCTION: Involved in salt stress tolerance. {ECO:0000250|UniProtKB:Q9C7A2}. ENOG411E13U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANX Os09g0453300 protein (Putative fiber annexin) (cDNA clone:J033102I24, full insert sequence),Os09g0453300 protein Q67UZ4,A0A0N7KQX1 Q67UZ4_ORYSJ,A0A0N7KQX1_ORYSJ P0488D02.22-1 Os09g0453300 OsJ_29601 OSNPB_090453300,Os09g0453300 OSNPB_090453300 ENOG411E13T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os01g0937000 protein (Fragment),Os01g0937050 protein (Putative xylanase inhibitor),Os01g0937200 protein (Putative xylanase inhibitor),Os09g0355850 protein Q0JG83,Q8S1V1,Q8S1U9,A0A0N7KQM9 Q0JG83_ORYSJ,Q8S1V1_ORYSJ,Q8S1U9_ORYSJ,A0A0N7KQM9_ORYSJ Os01g0937000 Os01g0937000 OSNPB_010937000,Os01g0937050 OSNPB_010937050 P0504E02.9,Os01g0937200 OSNPB_010937200 P0504E02.11,Os09g0355850 OSNPB_090355850 ENOG411E13K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0549900 protein (Fragment) A0A0P0VK91 A0A0P0VK91_ORYSJ Os02g0549900 OSNPB_020549900 ENOG411E13J Q8LPK6 Q8LPK6_ARATH At3g49000 (RNA polymerase III subunit RPC82 family protein) (RNA polymerase III subunit-like protein) R-ATH-1834949; 59336 At3g49000 (RNA polymerase III subunit RPC82 family protein) (RNA polymerase III subunit-like protein) DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase III promoter [GO:0006383] locus:2101268; AT3G49000 RNA polymerase III subunit Os01g0679000 protein (RNA polymerase III subunit-like protein) (cDNA clone:001-016-G12, full insert sequence),Os01g0679000 protein (Fragment) Q5QM91,A0A0P0V6I7 Q5QM91_ORYSJ,A0A0P0V6I7_ORYSJ B1144G04.33-1 Os01g0679000 OSNPB_010679000,Os01g0679000 OSNPB_010679000 ENOG411E13I T20N10_180 Q9LXR9,Q84VV0,A0A1I9LQR3 Q9LXR9_ARATH,Q84VV0_ARATH,A0A1I9LQR3_ARATH Haloacid dehalogenase (HAD) superfamily protein (Uncharacterized protein T20N10_180),At3g58830 (Haloacid dehalogenase (HAD) superfamily protein) (Uncharacterized protein At3g58830),Haloacid dehalogenase (HAD) superfamily protein 39094,38549,37179 Haloacid dehalogenase (HAD) superfamily protein (Uncharacterized protein T20N10_180),At3g58830 (Haloacid dehalogenase (HAD) superfamily protein) (Uncharacterized protein At3g58830),Haloacid dehalogenase (HAD) superfamily protein chloroplast [GO:0009507]; phosphatidylglycerophosphatase activity [GO:0008962]; lipid biosynthetic process [GO:0008610] locus:2099104; AT3G58830 Pfam:DUF2010 NA NA NA NA NA NA NA ENOG411E13H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 Os03g0216800 protein (Polygalacturonase, putative, expressed) (cDNA clone:001-127-F09, full insert sequence) Q10PY4 Q10PY4_ORYSJ LOC_Os03g11760 Os03g0216800 OSNPB_030216800 ENOG411E13N Q9SD20 MS5L2_ARATH Protein POLLENLESS 3-LIKE 2 FUNCTION: Probably involved in the regulation of cell division. {ECO:0000250|UniProtKB:Q9SUC3}. 47977 Protein POLLENLESS 3-LIKE 2 nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301] locus:2080858; AT3G51280 Tetratricopeptide repeat Os09g0538500 protein (Putative pollenless3) (cDNA clone:001-124-C06, full insert sequence) (cDNA clone:J033031F12, full insert sequence) (cDNA clone:J033070K09, full insert sequence) Q69JE7 Q69JE7_ORYSJ Os09g0538500 Os09g0538500 OsJ_30159 OSNPB_090538500 P0229B10.27 ENOG411E13M PAT03 Q5PNZ1 ZDH21_ARATH Probable protein S-acyltransferase 3 (EC 2.3.1.225) (Probable palmitoyltransferase At5g05070) (Zinc finger DHHC domain-containing protein At5g05070) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.4}. 2.3.1.225 47778 Probable protein S-acyltransferase 3 (EC 2.3.1.225) (Probable palmitoyltransferase At5g05070) (Zinc finger DHHC domain-containing protein At5g05070) cytoplasmic vesicle membrane [GO:0030659]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein-cysteine S-palmitoyltransferase activity [GO:0019706] TISSUE SPECIFICITY: Expressed in flowers and pollen. {ECO:0000269|PubMed:22968831}. locus:2175349; AT5G05070 S-acyltransferase NA NA NA NA NA NA NA ENOG411E13C PCMP-E84 Q9M2Y4 PP276_ARATH Pentatricopeptide repeat-containing protein At3g49740 82013 Pentatricopeptide repeat-containing protein At3g49740 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2097410; AT3G49740 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E13B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os07g0643100 protein (Putative esterase) (cDNA clone:002-153-H02, full insert sequence),Os07g0643000 protein Q8H5P9,A0A0P0X9D4 Q8H5P9_ORYSJ,A0A0P0X9D4_ORYSJ OJ1003_C06.121 Os07g0643100 OSNPB_070643100,Os07g0643000 OSNPB_070643000 ENOG411E13A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH:flavin oxidoreductase / NADH oxidase family Putative 12-oxophytodienoate reductase 8 (EC 1.3.1.-) (OPDA-reductase 8) (OsOPR8),Os02g0559400 protein Q0E0C6,A0A0P0VKH1 OPR8_ORYSJ,A0A0P0VKH1_ORYSJ OPR8 OPR7 Os02g0559400 LOC_Os02g35310 P0435E12.12,Os02g0559400 OSNPB_020559400 FUNCTION: Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}. ENOG411E13G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411E13F APRL5,APRL7 Q93YX4,Q84JN1,A0A1P8BC22,A0A1P8BC37 APRL5_ARATH,APRL7_ARATH,A0A1P8BC22_ARATH,A0A1P8BC37_ARATH 5'-adenylylsulfate reductase-like 5 (Adenosine 5'-phosphosulfate reductase-like 5) (APR-like 5) (AtAPRL5),5'-adenylylsulfate reductase-like 7 (Adenosine 5'-phosphosulfate reductase-like 7) (APR-like 7) (AtAPRL7),APR-like 7 33650,32614,25615,27432 5'-adenylylsulfate reductase-like 5 (Adenosine 5'-phosphosulfate reductase-like 5) (APR-like 5) (AtAPRL5),5'-adenylylsulfate reductase-like 7 (Adenosine 5'-phosphosulfate reductase-like 7) (APR-like 7) (AtAPRL7),APR-like 7 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976],cell [GO:0005623]; integral component of membrane [GO:0016021]; cell redox homeostasis [GO:0045454] locus:2079439;,locus:2172354; AT3G03860,AT5G18120 reductase-like 5'-adenylylsulfate reductase-like 5 (Adenosine 5'-phosphosulfate reductase-like 5) (APR-like 5) (OsAPRL5) Q84M47 APRL5_ORYSJ APRL5 Os03g0806500 LOC_Os03g59170 OsJ_13029 OSJNBa0059E14.22 ENOG411E13E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E13D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen Expansin-B3 (Beta-expansin-3) (OsEXPB3) (OsaEXPb1.10),Os10g0555900 protein (Fragment) Q336T5,A0A0N7KS70 EXPB3_ORYSJ,A0A0N7KS70_ORYSJ EXPB3 Os10g0555900 LOC_Os10g40720 OSJNBa0010C11.1 OSJNBb0014I11.1,Os10g0555900 OSNPB_100555900 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity). {ECO:0000250}. ENOG411E139 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA domain containing CoxE-like protein Os03g0142500 protein (Zinc finger family protein, putative, expressed) (cDNA clone:J023052J15, full insert sequence),Os10g0464500 protein Q10RY0,A0A0P0XV48 Q10RY0_ORYSJ,A0A0P0XV48_ORYSJ LOC_Os03g04890 Os03g0142500 OsJ_09360 OSNPB_030142500,Os10g0464500 OSNPB_100464500 ENOG411E138 GTE12 Q9LS28 GTE12_ARATH Transcription factor GTE12 (Bromodomain-containing protein GTE12) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E12) 55619 Transcription factor GTE12 (Bromodomain-containing protein GTE12) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E12) nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2142305; AT5G46550 Transcription factor Os07g0507700 protein (Fragment) A0A0P0X662 A0A0P0X662_ORYSJ Os07g0507700 OSNPB_070507700 ENOG411E133 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTP Os02g0699900 protein (Os02g0699950 protein),Os02g0699824 protein (Fragment) Q6Z8D5,A0A0P0VNU7 Q6Z8D5_ORYSJ,A0A0P0VNU7_ORYSJ Os02g0699900 Os02g0699950 OJ1111_E07.4 OSNPB_020699900 P0459B01.33,Os02g0699824 OSNPB_020699824 ENOG411E132 CIPK14 Q9LZW4 CIPKE_ARATH CBL-interacting serine/threonine-protein kinase 14 (EC 2.7.11.1) (SNF1-related kinase 3.15) (SOS2-like protein kinase PKS24) (Serine/threonine-protein kinase SR1) (AtSR1) Etiolated cotyledons following a far red to white light shift-L. XuanMing-2010 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 50298 CBL-interacting serine/threonine-protein kinase 14 (EC 2.7.11.1) (SNF1-related kinase 3.15) (SOS2-like protein kinase PKS24) (Serine/threonine-protein kinase SR1) (AtSR1) nucleus [GO:0005634]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] DEVELOPMENTAL STAGE: First observed in imbibed seeds. Mostly localized in hypocotyls during germination and in seedlings. In mature plants, confined to vascular tissues of leaves and roots. In flowers, expressed in the vascular bundle of the stamen filament and in the stigma, where the filament joins the pistil. {ECO:0000269|PubMed:15665497}. TISSUE SPECIFICITY: Predominant in roots, cauline leaves, and flowers. {ECO:0000269|PubMed:11577192}. locus:2181057; AT5G01820 Cbl-interacting protein kinase NA NA NA NA NA NA NA ENOG411E131 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1336) Os02g0102800 protein,Os06g0116500 protein,Os02g0102800 protein (Fragment),Os09g0107600 protein (Fragment) Q6YU77,Q0DF38,A0A0P0VDU1,A0A0P0XIE5 Q6YU77_ORYSJ,Q0DF38_ORYSJ,A0A0P0VDU1_ORYSJ,A0A0P0XIE5_ORYSJ B1370C05.34-1 OJ1435_F07.24-1 Os02g0102800 OSNPB_020102800,Os06g0116500 Os06g0116500 OSNPB_060116500,Os02g0102800 OSNPB_020102800,Os09g0107600 OSNPB_090107600 ENOG411E130 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0170700 protein A0A0P0WIM0 A0A0P0WIM0_ORYSJ Os05g0170700 OSNPB_050170700 ENOG411E137 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411E136 Q9SIZ6 GDL47_ARATH GDSL esterase/lipase At2g40250 (EC 3.1.1.-) (Extracellular lipase At2g40250) ARA:AT2G40250-MONOMER; 3.1.1.- 39885 GDSL esterase/lipase At2g40250 (EC 3.1.1.-) (Extracellular lipase At2g40250) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2063083; AT2G40250 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411E135 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q6K558 Q6K558_ORYSJ Os09g0360500 Os09g0360500 OSNPB_090360500 P0711F01.41 ENOG411E134 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon Reticulon-like protein (Fragment) Q0JPF1 Q0JPF1_ORYSJ Os01g0226300 Os01g0226300 OSNPB_010226300 ENOG411EKF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EKF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response regulator NA NA NA NA NA NA NA ENOG411EAHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB3Z WDL1 Q8GYX9 WDL1_ARATH Protein WVD2-like 1 (AtWDL1) FUNCTION: Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. Modulates both rotational polarity and anisotropic cell expansion during organ growth. Promotes clockwise root and etiolated hypocotyls coiling, clockwise leaf curling, but left-handed petiole twisting. {ECO:0000269|PubMed:12586874, ECO:0000269|PubMed:17319849}. 31950 Protein WVD2-like 1 (AtWDL1) cytoplasm [GO:0005737]; microtubule [GO:0005874]; circumnutation [GO:0010031]; root morphogenesis [GO:0010015] locus:2084878; AT3G04630 Targeting protein for Xklp2 (TPX2) NA NA NA NA NA NA NA ENOG411EB3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase At4g08850-like Os01g0296000 protein (Putative receptor-like protein kinase 1) Q5JNH7 Q5JNH7_ORYSJ Os01g0296000 OSJNBa0025P13.1 OSNPB_010296000 ENOG411EB3V Q9LQ47,Q9M8J0,F4ID20 FB66_ARATH,Q9M8J0_ARATH,F4ID20_ARATH Putative F-box protein At1g59675,F-box associated ubiquitination effector family protein (F28L1.22 protein),F-box associated ubiquitination effector family protein 18656,22797,16761 Putative F-box protein At1g59675,F-box associated ubiquitination effector family protein (F28L1.22 protein),F-box associated ubiquitination effector family protein locus:504956123;,locus:2082475;,locus:504956122; AT1G59675,AT3G06280,AT1G59690 at1g50870 (e NA NA NA NA NA NA NA ENOG411EB3W RAX1 Q9FG68 RAX1_ARATH Transcription factor RAX1 (Myb-related protein 37) (AtMYB37) (Protein REGULATOR OF AXILLARY MERISTEMS 1) FUNCTION: Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. 37045 Transcription factor RAX1 (Myb-related protein 37) (AtMYB37) (Protein REGULATOR OF AXILLARY MERISTEMS 1) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. Later, expressed transiently at the center of the boundary between the SAM and developing leaf primordia. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. TISSUE SPECIFICITY: Mostly expressed in roots. Also present in shoot tips and flower buds. {ECO:0000269|PubMed:16461581}. locus:2181146; AT5G23000 Transcription factor NA NA NA NA NA NA NA ENOG411EB3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Condensation domain NA NA NA NA NA NA NA ENOG411EB3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0558700 protein,Expressed protein (Os12g0534700 protein) (cDNA clone:J033112P03, full insert sequence),CsAtPR5, putative, expressed (Os12g0535300 protein),Os12g0535800 protein,Os11g0560700 protein,Os12g0535200 protein Q2R2L2,Q2QPC8,Q2QPC2,A0A0P0YB36,A0A0P0Y453,A0A0P0YAY2 Q2R2L2_ORYSJ,Q2QPC8_ORYSJ,Q2QPC2_ORYSJ,A0A0P0YB36_ORYSJ,A0A0P0Y453_ORYSJ,A0A0P0YAY2_ORYSJ Os11g0558700 LOC_Os11g35430 OSNPB_110558700,LOC_Os12g34920 Os12g0534700 OSNPB_120534700,Os12g0535300 LOC_Os12g34980 OsJ_36359 OSNPB_120535300,Os12g0535800 OSNPB_120535800,Os11g0560700 OSNPB_110560700,Os12g0535200 OSNPB_120535200 ENOG411EB3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion transport protein NA NA NA NA NA NA NA ENOG411EB3K MXI22.7 Q9FK36 Q9FK36_ARATH Uncharacterized protein At5g50360 (von willebrand factor A domain protein) 32295 Uncharacterized protein At5g50360 (von willebrand factor A domain protein) locus:2177517; AT5G50360 NA NA NA NA NA NA NA NA ENOG411EB3E Atmyb2 Q39028 Q39028_ARATH ATMYB2 (At2g47190) (MYB transcription factor) (MYB transcription factor (Atmyb2)) (MYB transcription factor Atmyb2) (Myb domain protein 2) 31448 ATMYB2 (At2g47190) (MYB transcription factor) (MYB transcription factor (Atmyb2)) (MYB transcription factor Atmyb2) (Myb domain protein 2) nucleus [GO:0005634]; calmodulin binding [GO:0005516]; core promoter sequence-specific DNA binding [GO:0001046]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; cellular response to phosphate starvation [GO:0016036]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:2065226; AT2G47190 transcription factor NA NA NA NA NA NA NA ENOG411EB3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated ABC transporter G family member 39 (OsABCG39) (Pleiotropic drug resistance protein 7) (OsPDR7),Os02g0208300 protein (Fragment) Q8GU88,A0A0P0VG68 AB39G_ORYSJ,A0A0P0VG68_ORYSJ ABCG39 PDR7 Os02g0208300 LOC_Os02g11760 OJ1003_F05.29-1 OJ1006_A02.12-1,Os02g0208300 OSNPB_020208300 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411EB3G F4HR96,A0A1P8AND8 F4HR96_ARATH,A0A1P8AND8_ARATH Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) FUNCTION: Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide. {ECO:0000256|PIRNR:PIRNR028944}. R-ATH-1660662; 3.2.1.45 105750,94416 Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) membrane [GO:0016020]; vacuole [GO:0005773]; glucosylceramidase activity [GO:0004348]; glucosylceramide catabolic process [GO:0006680],membrane [GO:0016020]; glucosylceramidase activity [GO:0004348]; glucosylceramide catabolic process [GO:0006680] locus:2012708; AT1G33700 Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (By similarity) NA NA NA NA NA NA NA ENOG411EB3A PHL12 Q8VYI2,A0A1I9LT26 PHLC_ARATH,A0A1I9LT26_ARATH Myb family transcription factor PHL12 (Protein PHR1-LIKE 12),Homeodomain-like superfamily protein 26929,20812 Myb family transcription factor PHL12 (Protein PHR1-LIKE 12),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. locus:2087740; AT3G12730 MYB family transcription factor NA NA NA NA NA NA NA ENOG411EB39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411EB34 GSTU16,GSTU15 Q9XIF8,Q9LQ48 GSTUG_ARATH,GSTUF_ARATH Glutathione S-transferase U16 (AtGSTU16) (EC 2.5.1.18) (GST class-tau member 16),Glutathione S-transferase U15 (AtGSTU15) (EC 2.5.1.18) (GST class-tau member 15) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G59700-MONOMER;,ARA:AT1G59670-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 26506,26535 Glutathione S-transferase U16 (AtGSTU16) (EC 2.5.1.18) (GST class-tau member 16),Glutathione S-transferase U15 (AtGSTU15) (EC 2.5.1.18) (GST class-tau member 15) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2025901;,locus:2202897; AT1G59700,AT1G59670 glutathione s-transferase tau 16 NA NA NA NA NA NA NA ENOG411EB36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD40 NA NA NA NA NA NA NA ENOG411EB37 NGA3 Q9MAN1,A0A1P8AT85 NGA3_ARATH,A0A1P8AT85_ARATH B3 domain-containing transcription factor NGA3 (Protein NGATHA3),AP2/B3-like transcriptional factor family protein Abnormal pistil morphology-C. Ferrandiz-2009 FUNCTION: Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. 40288,37616 B3 domain-containing transcription factor NGA3 (Protein NGATHA3),AP2/B3-like transcriptional factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; leaf development [GO:0048366]; regulation of leaf morphogenesis [GO:1901371]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2200950; AT1G01030 transcription factor NA NA NA NA NA NA NA ENOG411EB30 JAL45 Q9FNM2 JAL45_ARATH Jacalin-related lectin 45 44175 Jacalin-related lectin 45 carbohydrate binding [GO:0030246] locus:2161378; AT5G46000 Jacalin NA NA NA NA NA NA NA ENOG411EB31 SEOA,SEOa Q93XX2,A0A1I9LMF2 SEOA_ARATH,A0A1I9LMF2_ARATH Protein SIEVE ELEMENT OCCLUSION A (AtSEOa) (Protein SIEVE ELEMENT OCCLUSION-RELATED 2) (AtSEOR2),Sieve element occlusion protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22470058}. FUNCTION: Scaffold protein required to form the phloem filament matrix in sieve elements. {ECO:0000269|PubMed:22470058}. 94217,96864 Protein SIEVE ELEMENT OCCLUSION A (AtSEOa) (Protein SIEVE ELEMENT OCCLUSION-RELATED 2) (AtSEOR2),Sieve element occlusion protein protein homodimerization activity [GO:0042803]; protein self-association [GO:0043621]; phloem development [GO:0010088] TISSUE SPECIFICITY: Expressed in phloem sieve elements. {ECO:0000269|PubMed:20932300}. locus:2084143; AT3G01670 NA NA NA NA NA NA NA NA ENOG411EB32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411EKFE ARR11 Q9FXD6,A0A1P8AMW7,A0A1P8AMX5 ARR11_ARATH,A0A1P8AMW7_ARATH,A0A1P8AMX5_ARATH Two-component response regulator ARR11 (Receiver-like protein 3),Response regulator 11 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}. 58579,50199,51182 Two-component response regulator ARR11 (Receiver-like protein 3),Response regulator 11 nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay response regulator activity [GO:0000156]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; regulation of root meristem growth [GO:0010082]; response to cytokinin [GO:0009735]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}. locus:2008585; AT1G67710 two-component response regulator Two-component response regulator ORR26 (OsRRB6) Q5N6V8 ORR26_ORYSJ RR26 ORR6 Os01g0904700 LOC_Os01g67770 OsJ_04457 OSJNOa013M08.3 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering, late heading and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. ENOG411EKFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EKFH ARR9 O80366 ARR9_ARATH Two-component response regulator ARR9 (Response reactor 4) Slightly fewer lateral roots-J. Kieber-2004 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:14973166}. 26089 Two-component response regulator ARR9 (Response reactor 4) nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; circadian rhythm [GO:0007623]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:9607306}. locus:2080590; AT3G57040 response regulator Two-component response regulator ORR10 (OsRR10) (OsRRA2),Two-component response regulator ORR9 (OsRR9) (OsRRA1),Os11g0143300 protein Q2QXY3,Q2RAP3,A0A0P0XZ24 ORR10_ORYSJ,ORR9_ORYSJ,A0A0P0XZ24_ORYSJ RR10 Os12g0139400 LOC_Os12g04500 OsJ_35177,RR9 Os11g0143300 LOC_Os11g04720 OsJ_32929,Os11g0143300 OSNPB_110143300 DISRUPTION PHENOTYPE: Dwarf, viviparous, lesion mimic and sterility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411EHCI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0736900 protein (Os02g0736901 protein) (Fragment) C7IYZ9 C7IYZ9_ORYSJ Os02g0736900 Os02g0736901 OSNPB_020736900 ENOG411DU82 CSN4 Q8L5U0 CSN4_ARATH COP9 signalosome complex subunit 4 (AtS4) (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (Protein FUSCA 4) In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,Lacks the intact COP9 signalosome (CSN).,Mutation is lethal in the homozygous state.,constitutive photomorphogenesis,The colour of mutant seeds is normal and similar to that of the wild type. Seedling lethal; Red embryos and cotyledons due to anthocyanin accumulation; Abnormal growth in the dark; Short roots in response to sugar-X. Deng-1999 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. {ECO:0000269|PubMed:10521526, ECO:0000269|PubMed:11337587}. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 44957 COP9 signalosome complex subunit 4 (AtS4) (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (Protein FUSCA 4) COP9 signalosome [GO:0008180]; cytosol [GO:0005829]; protein complex [GO:0043234]; multicellular organism development [GO:0007275]; positive regulation of G2/M transition of mitotic cell cycle [GO:0010971]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585] locus:2159961; AT5G42970 COP9 signalosome complex subunit COP9 signalosome complex subunit 4, putative, expressed (Os03g0197400 protein) (cDNA clone:J023092I05, full insert sequence) Q10QG2 Q10QG2_ORYSJ Os03g0197400 LOC_Os03g10120 Os03g0197400 OsJ_09777 OSNPB_030197400 ENOG411EAH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit NA NA NA NA NA NA NA ENOG411EASV Q9SYP3,F4HSR2,F4HUM5,F4HSR6 FBK7_ARATH,F4HSR2_ARATH,F4HUM5_ARATH,F4HSR6_ARATH Putative F-box/kelch-repeat protein At1g20940,SWI-SNF-related chromatin binding protein 46625,64958,27700,44052 Putative F-box/kelch-repeat protein At1g20940,SWI-SNF-related chromatin binding protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2037395;,locus:2012923;,locus:2030452;,locus:2012893; AT1G20940,AT1G20240,AT1G20690,AT1G20290 NA NA NA NA NA NA NA NA ENOG411EHC8 Q2V2R0,F4IZM5 Q2V2R0_ARATH,F4IZM5_ARATH Uncharacterized protein 18019,15772 Uncharacterized protein locus:1009023159;,locus:2099217; AT2G48075,AT3G63050 NA NA NA NA NA NA NA NA ENOG411EHC9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: enkurin domain containing 1 NA NA NA NA NA NA NA ENOG411E5VT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0412200 protein) (cDNA clone:001-040-D05, full insert sequence),Expressed protein (Os03g0412200 protein) (cDNA clone:J013153M22, full insert sequence) Q10JQ2,Q852F0 Q10JQ2_ORYSJ,Q852F0_ORYSJ Os03g0412200 LOC_Os03g29910 Os03g0412200 OsJ_11247 OSNPB_030412200,Os03g0412200 LOC_Os03g29910 Os03g29910 OSNPB_030412200 ENOG411E5VP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1068) NA NA NA NA NA NA NA ENOG411E5VQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0186600 protein (cDNA clone:002-139-E05, full insert sequence),Os01g0186500 protein,Os07g0187000 protein (Fragment) Q5VRW8,Q9LDL1,A0A0P0X2Z4 Q5VRW8_ORYSJ,Q9LDL1_ORYSJ,A0A0P0X2Z4_ORYSJ Os01g0186600 OSNPB_010186600 P0510F03.37 P0695A04.4,Os01g0186500 OSNPB_010186500 P0510F03.34 P0695A04.1,Os07g0187000 OSNPB_070187000 ENOG411E5VI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0512200 protein (Fragment) A0A0P0XHU7 A0A0P0XHU7_ORYSJ Os08g0512200 OSNPB_080512200 ENOG411DWN2 F4HWC3 F4HWC3_ARATH Calponin-like domain protein 150161 Calponin-like domain protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; mRNA binding [GO:0003729] locus:2037365; AT1G20970 Inherit from NOG: proton pump interactor NA NA NA NA NA NA NA ENOG411E5VE F4JLP3 F4JLP3_ARATH cAMP-regulated phosphoprotein 19-related protein 11474 cAMP-regulated phosphoprotein 19-related protein locus:505006476; AT4G16146 cAMP-regulated phosphoprotein/endosulfine conserved region NA NA NA NA NA NA NA ENOG411DWNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os10g0405100 protein (Putative serine /threonine kinase similar to NAK) (Putative serine/threonine-specific kinase) (Serine/threonine-protein kinase NAK, putative, expressed),Os10g0405100 protein,Os03g0170400 protein Q7XEV8,A0A0P0XU03,A0A0P0VTK6 Q7XEV8_ORYSJ,A0A0P0XU03_ORYSJ,A0A0P0VTK6_ORYSJ OSJNBb0044I14.4 OSJNBa0060A14.1 LOC_Os10g26520 Os10g0405100 OsJ_31459 OSNPB_100405100,Os10g0405100 OSNPB_100405100,Os03g0170400 OSNPB_030170400 ENOG411DZP9 FRS12,FRS7 Q3E7I5,Q9M8J3 FRS12_ARATH,FRS7_ARATH Protein FAR1-RELATED SEQUENCE 12,Protein FAR1-RELATED SEQUENCE 7 FUNCTION: Putative transcription activator involved in regulating light control of development. 90497,87810 Protein FAR1-RELATED SEQUENCE 12,Protein FAR1-RELATED SEQUENCE 7 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585] TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. locus:2144930;,locus:2082420; AT5G18960,AT3G06250 protein FAR1-RELATED SEQUENCE NA NA NA NA NA NA NA ENOG411DZVD Q93VK1 Q93VK1_ARATH AT4g28450/F20O9_130 (WD repeat and SOF domain-containing protein 1) R-ATH-6791226;R-ATH-8951664; 51358 AT4g28450/F20O9_130 (WD repeat and SOF domain-containing protein 1) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2121328; AT4G28450 DDB1- and CUL4-associated factor Os01g0238900 protein A0A0P0V0F4 A0A0P0V0F4_ORYSJ Os01g0238900 OSNPB_010238900 ENOG411DZVF ASI1 Q9LYE3,Q1G2Z8,Q1G2Z7,F4J000 ASI1_ARATH,Q1G2Z8_ARATH,Q1G2Z7_ARATH,F4J000_ARATH Protein ANTI-SILENCING 1 (Protein INCREASE IN BONSAI METHYLATION 2) (Protein SHOOT GROWTH 1),Nucleic acid binding protein DISRUPTION PHENOTYPE: Developmental defects, dwarf phenotype and short siliques. DNA hypermethylation at genic regions. {ECO:0000269|PubMed:23934508, ECO:0000269|PubMed:24003136}. FUNCTION: Required to prevent promoter DNA hypermethylation and transcriptional silencing of some transgenes (PubMed:24003136). Plays a similar role to that of the histone H3K9 demethylase JMJ25/IBM1 in preventing CHG methylation in the bodies of numerous genes. RNA-binding protein that ensures the proper expression of JMJ25/IBM1 full-length transcript by associating with an intronic heterochromatic repeat element of JMJ25/IBM1 (PubMed:24003136, PubMed:23934508, PubMed:24404182). May associate with intronic heterochromatin and bind gene transcripts to promote their 3' distal polyadenylation (PubMed:24003136). Contributes to a unique mechanism to deal with the collateral effect of silencing intronic repeat elements (PubMed:24003136, PubMed:23934508, PubMed:24404182). {ECO:0000269|PubMed:23934508, ECO:0000269|PubMed:24003136, ECO:0000269|PubMed:24404182}. 72782,44763,44546,54276 Protein ANTI-SILENCING 1 (Protein INCREASE IN BONSAI METHYLATION 2) (Protein SHOOT GROWTH 1),Nucleic acid binding protein chromatin binding [GO:0003682]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; negative regulation of chromatin silencing [GO:0031936]; negative regulation of DNA methylation [GO:1905642]; regulation of DNA methylation [GO:0044030]; regulation of histone H3-K9 methylation [GO:0051570]; regulation of histone methylation [GO:0031060]; transcription, DNA-templated [GO:0006351],RNA binding [GO:0003723],chromatin [GO:0000785]; chromatin silencing complex [GO:0005677]; chromatin binding [GO:0003682]; RNA binding [GO:0003723]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; chromatin silencing [GO:0006342]; heterochromatin assembly [GO:0031507] locus:2144256;,locus:2092545; AT5G11470,AT3G15605 BAH domain Os01g0610300 protein (cDNA clone:J033089K24, full insert sequence) Q5ZE12 Q5ZE12_ORYSJ Os01g0610300 Os01g0610300 OSNPB_010610300 P0410E03.22 ENOG411DZVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acid phosphatase Purple acid phosphatase (EC 3.1.3.2),Os01g0786200 protein Q2QLL9,A0A0P0V918 Q2QLL9_ORYSJ,A0A0P0V918_ORYSJ LOC_Os12g44020 Os12g0637100 OsJ_37001 OSNPB_120637100,Os01g0786200 OSNPB_010786200 ENOG411DZVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os06g0549300 protein (Fragment) A0A0P0WXN6 A0A0P0WXN6_ORYSJ Os06g0549300 OSNPB_060549300 ENOG411DZVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione NA NA NA NA NA NA NA ENOG411DZVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411DZVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: chorismate mutase Chorismate mutase (EC 5.4.99.5) Q6Z9E6 Q6Z9E6_ORYSJ Os08g0441600 OSNPB_080441600 P0528B09.37 ENOG411DZVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABSCISIC ACID-INSENSITIVE 5-like protein NA NA NA NA NA NA NA ENOG411DZVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rho GDP-dissociation inhibitor NA NA NA NA NA NA NA ENOG411DZVW PCMP-E81 Q9SR01 PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750, mitochondrial 74767 Pentatricopeptide repeat-containing protein At3g04750, mitochondrial chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; chloroplast RNA modification [GO:1900865]; chloroplast RNA processing [GO:0031425] locus:2084963; AT3G04750 Pentatricopeptide repeat-containing protein Os09g0474400 protein,Os03g0743200 protein (Fragment) C7J6S1,A0A0P0W2R9 C7J6S1_ORYSJ,A0A0P0W2R9_ORYSJ Os09g0474400 OSNPB_090474400,Os03g0743200 OSNPB_030743200 ENOG411DZVP BBD1,BBD2,AtBBD2 Q9FWS6,Q93VH2,A0A1P8AVM3 BBD1_ARATH,BBD2_ARATH,A0A1P8AVM3_ARATH Bifunctional nuclease 1 (AtBBD1) (EC 3.1.-.-),Bifunctional nuclease 2 (AtBBD2) (EC 3.1.-.-),Wound-responsive family protein DISRUPTION PHENOTYPE: Increased susceptibility to fungal pathogens. {ECO:0000269|PubMed:20018603}. Susceptible to fungal infection; Low callose levels-J. Shin-2010 FUNCTION: Bifunctional nuclease with both RNase and DNase activities. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen. {ECO:0000269|PubMed:20018603}.,FUNCTION: Bifunctional nuclease with both RNase and DNase activities. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen (By similarity). {ECO:0000250}. 3.1.-.- 36174,37052,36767 Bifunctional nuclease 1 (AtBBD1) (EC 3.1.-.-),Bifunctional nuclease 2 (AtBBD2) (EC 3.1.-.-),Wound-responsive family protein nucleus [GO:0005634]; nuclease activity [GO:0004518]; sequence-specific DNA binding [GO:0043565]; defense response to fungus [GO:0050832],nucleus [GO:0005634]; nuclease activity [GO:0004518],nuclease activity [GO:0004518] locus:2018422;,locus:2013164; AT1G75380,AT1G19660 Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen Bifunctional nuclease 2 (OsBBD2) (EC 3.1.-.-),Os08g0357000 protein (Fragment) Q6YZM6,A0A0P0XFF0 BBD2_ORYSJ,A0A0P0XFF0_ORYSJ BBD2 Os08g0357000 LOC_Os08g26870 OsJ_27034 P0426E02.15,Os08g0357000 OSNPB_080357000 FUNCTION: Bifunctional nuclease with both RNase and DNase activities. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen (By similarity). {ECO:0000250}. ENOG411DZVR MED20A,MED20B Q6NPF4,Q9M0S0,Q8S8F0,A0A1P8AZA2 MD20A_ARATH,MD20B_ARATH,Q8S8F0_ARATH,A0A1P8AZA2_ARATH Mediator of RNA polymerase II transcription subunit 20a,Mediator of RNA polymerase II transcription subunit 20b,Mediator of RNA polymerase II transcription subunit (Uncharacterized protein At2g28020),TATA-binding related factor (TRF) of subunit 20 of Mediator complex FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364152}. 25127,25123,7870,19528 Mediator of RNA polymerase II transcription subunit 20a,Mediator of RNA polymerase II transcription subunit 20b,Mediator of RNA polymerase II transcription subunit (Uncharacterized protein At2g28020),TATA-binding related factor (TRF) of subunit 20 of Mediator complex mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription coactivator activity [GO:0003713]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],mediator complex [GO:0016592]; transcription coactivator activity [GO:0003713]; regulation of transcription from RNA polymerase II promoter [GO:0006357],mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104] locus:2062799;,locus:2122318;,locus:2057886; AT2G28230,AT4G09070,AT2G28020 Mediator of RNA polymerase II transcription subunit Mediator of RNA polymerase II transcription subunit 20 (Mediator complex subunit 20) Q67UT1 Q67UT1_ORYSJ MED20 Os09g0443500 OsJ_29541 OSNPB_090443500 P0046G12.37 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364152}. ENOG411DZVS MUD21.12 Q9FKZ4 Q9FKZ4_ARATH Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein (Uncharacterized protein At5g66860; MUD21.12) 27337 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein (Uncharacterized protein At5g66860; MUD21.12) cytosolic large ribosomal subunit [GO:0022625]; mitochondrion [GO:0005739]; 5S rRNA binding [GO:0008097]; aminoacyl-tRNA ligase activity [GO:0004812]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2174979; AT5G66860 ribosomal protein Os03g0612600 protein (Fragment) A0A0P0W059 A0A0P0W059_ORYSJ Os03g0612600 OSNPB_030612600 ENOG411DZVZ Q9C802,F4HR83 Q9C802_ARATH,F4HR83_ARATH Tropomyosin (Uncharacterized protein F10C21.15),Tropomyosin 29043,31900 Tropomyosin (Uncharacterized protein F10C21.15),Tropomyosin locus:2007028; AT1G33500 NA Os08g0320300 protein Q0J6H4 Q0J6H4_ORYSJ Os08g0320300 Os08g0320300 OSNPB_080320300 ENOG411DZV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:3_5_exonuc OSJNBb0072N21.11 protein (Os04g0225100 protein) Q7XWZ1 Q7XWZ1_ORYSJ Os04g0225100 Os04g0225100 OSJNBb0072N21.11 OSNPB_040225100 ENOG411DZV6 DEGP5,DEG5 Q9SEL7,A0A1P8B643,A0A1P8B644 DEGP5_ARATH,A0A1P8B643_ARATH,A0A1P8B644_ARATH Protease Do-like 5, chloroplastic (EC 3.4.21.-),DEGP protease 5 Slightly slower growth; Small rosettes under high light-L. Zhang-2007 FUNCTION: Probable serine protease. 3.4.21.- 34923,28760,26332 Protease Do-like 5, chloroplastic (EC 3.4.21.-),DEGP protease 5 chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; serine-type endopeptidase activity [GO:0004252]; photosystem II repair [GO:0010206],serine-type endopeptidase activity [GO:0004252] locus:2124509; AT4G18370 protease Do-like 5 Os12g0616600 protein A0A0P0YCR1 A0A0P0YCR1_ORYSJ Os12g0616600 OSNPB_120616600 ENOG411DZV7 PXG5,PXG4 Q9CAB8,Q9CAB7,A0A1P8ANL6 PXG5_ARATH,PXG4_ARATH,A0A1P8ANL6_ARATH Probable peroxygenase 5 (AtPXG5) (EC 1.11.2.3) (Caleosin-5),Probable peroxygenase 4 (AtPXG4) (EC 1.11.2.3) (Caleosin-4),Caleosin-related family protein DISRUPTION PHENOTYPE: No visible phenotype, but increased sensitivity to exogenous abscisic acid and osmotic stresses. Increased drought tolerance. {ECO:0000269|PubMed:21471120}. FUNCTION: Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies. May be involved in the interaction between oil bodies and vacuoles during seed germination (By similarity). {ECO:0000250}.,FUNCTION: Calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies. May be involved in the interaction between oil bodies and vacuoles during seed germination (By similarity). Acts as a negative regulator of abscisic acid responses in non-seed tissues. {ECO:0000250, ECO:0000269|PubMed:21471120}. 1.11.2.3; 1.11.2.3 21519,22092,17705 Probable peroxygenase 5 (AtPXG5) (EC 1.11.2.3) (Caleosin-5),Probable peroxygenase 4 (AtPXG4) (EC 1.11.2.3) (Caleosin-4),Caleosin-related family protein endoplasmic reticulum [GO:0005783]; lipid droplet [GO:0005811]; organelle membrane [GO:0031090]; metal ion binding [GO:0046872]; plant seed peroxidase activity [GO:1990137],lipid droplet [GO:0005811]; metal ion binding [GO:0046872]; plant seed peroxidase activity [GO:1990137]; drought recovery [GO:0009819]; response to abscisic acid [GO:0009737],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, leaves, shoots and flowers. {ECO:0000269|PubMed:11197322, ECO:0000269|PubMed:19467604}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, shoots, flowers and germinated seeds. Barely detected in dry seeds prior to germination. Preferentially expressed in vascular bundles and in guard cells. {ECO:0000269|PubMed:19467604, ECO:0000269|PubMed:21471120}. locus:2033625;,locus:2033632; AT1G70680,AT1G70670 oxidoreductase activity Os06g0254700 protein (Putative calcium binding protein) (cDNA clone:006-308-F08, full insert sequence) (cDNA clone:J033057G06, full insert sequence) Q652U4 Q652U4_ORYSJ Os06g0254700 Os06g0254700 OSNPB_060254700 P0046H10.42 P0592E11.12 ENOG411DZV2 ERF2 O80338 EF101_ARATH Ethylene-responsive transcription factor 2 (AtERF2) (Ethylene-responsive element-binding factor 2) (EREBP-2) FUNCTION: Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. 26797 Ethylene-responsive transcription factor 2 (AtERF2) (Ethylene-responsive element-binding factor 2) (EREBP-2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell division [GO:0051301]; ethylene-activated signaling pathway [GO:0009873]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; positive regulation of transcription, DNA-templated [GO:0045893]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944] locus:2171514; AT5G47220 Transcription factor Development related ERF protein (OSJNBa0079A21.16 protein) (Os04g0546800 protein) (cDNA, clone: J100039E18, full insert sequence),Os02g0654700 protein (Putative AP2-related transcription factor) (cDNA clone:001-205-B11, full insert sequence) Q0JB99,Q6H7H6 Q0JB99_ORYSJ,Q6H7H6_ORYSJ OSJNBa0079A21.16 DRE Os04g0546800 OSNPB_040546800,Os02g0654700 Os02g0654700 OJ1003_B06.13 OSNPB_020654700 ENOG411DZV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14_3_3 14-3-3-like protein GF14-D (G-box factor 14-3-3 homolog D) Q2R2W2 14334_ORYSJ GF14D Os11g0546900 LOC_Os11g34450 OsJ_34200 FUNCTION: Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes. {ECO:0000250}. ENOG411DZV8 MQM1.14 Q8L7M3 Q8L7M3_ARATH At5g23590 (DNAJ heat shock N-terminal domain-containing protein) (Uncharacterized protein At5g23590) 33490 At5g23590 (DNAJ heat shock N-terminal domain-containing protein) (Uncharacterized protein At5g23590) cytosol [GO:0005829]; nucleic acid binding [GO:0003676] locus:2171736; AT5G23590 dnaJ homolog subfamily C member DnaJ domain containing protein, expressed (Os03g0136800 protein) Q10S35 Q10S35_ORYSJ Os03g0136800 LOC_Os03g04400 Os03g0136800 OSNPB_030136800 ENOG411DZV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acid phosphatase NA NA NA NA NA NA NA ENOG411E4DZ A0A1P8B0E6,A0A1P8B0D7,A0A1P8B0E8,Q6ICW4,A0A1P8B0D0,A0A1P8B0F3,A0A1P8B0D6,A0A1P8B0D8,A0A1P8B0E2,F4IFB5,F4IFB6 A0A1P8B0E6_ARATH,A0A1P8B0D7_ARATH,A0A1P8B0E8_ARATH,Q6ICW4_ARATH,A0A1P8B0D0_ARATH,A0A1P8B0F3_ARATH,A0A1P8B0D6_ARATH,A0A1P8B0D8_ARATH,A0A1P8B0E2_ARATH,F4IFB5_ARATH,F4IFB6_ARATH PTB domain engulfment adapter,At2g04790 (PTB domain engulfment adapter) 12809,9510,14552,10578,18854,19098,12321,20529,20284,18298,16868 PTB domain engulfment adapter,At2g04790 (PTB domain engulfment adapter) locus:2049193; AT2G04790 NA Os02g0588600 protein (cDNA clone:J013088N06, full insert sequence) Q0DZZ8 Q0DZZ8_ORYSJ Os02g0588600 Os02g0588600 OSNPB_020588600 ENOG411E4DJ MHF15.1 Q9FNG2,Q2V3X0,F4J7G2 Q9FNG2_ARATH,Q2V3X0_ARATH,F4J7G2_ARATH Emb|CAB81925.1 (Glutaredoxin family protein),Thioredoxin superfamily protein 27364,17733,23030 Emb|CAB81925.1 (Glutaredoxin family protein),Thioredoxin superfamily protein cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2164285;,locus:1009023244; AT5G06470,AT3G11773 Glutaredoxin NA NA NA NA NA NA NA ENOG411E4D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E4D6 Q8LAD4 Q8LAD4_ARATH At5g57345 (Transmembrane protein) 20190 At5g57345 (Transmembrane protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; cellular response to osmotic stress [GO:0071470]; cellular response to oxidative stress [GO:0034599] locus:505006695; AT5G57345 Protein of unknown function (DUF1517) Os06g0694800 protein (cDNA clone:J023043D01, full insert sequence) Q5Z8I1 Q5Z8I1_ORYSJ Os06g0694800 Os06g0694800 OsJ_22481 OSNPB_060694800 P0550B04.34 P0622F03.9 ENOG411E4D2 HSP17.6A,HSP17.8,HSP17.6B Q9XIE3,Q9LNW0,Q9ZW31 HS17A_ARATH,HS178_ARATH,HS17B_ARATH 17.6 kDa class I heat shock protein 1 (17.6 kDa heat shock protein 1) (AtHsp17.6A),17.8 kDa class I heat shock protein (17.8 kDa heat shock protein) (AtHsp17.8),17.6 kDa class I heat shock protein 2 (17.6 kDa heat shock protein 2) (AtHsp17.6B) DISRUPTION PHENOTYPE: Reduction of OEP7 targeting to plastids. {ECO:0000269|PubMed:21730198}. FUNCTION: Possesses chaperone activity. {ECO:0000269|PubMed:11576425, ECO:0000269|PubMed:21730198}.,FUNCTION: Cytosolic mediator for sorting and targeting of nascent chloroplast outer envelope membrane (OEM) proteins to the chloroplast. Functions as a AKR2A cofactor to facilitates the targeting of OEP7 to chloroplasts. {ECO:0000269|PubMed:21730198}. 17624,17828,17563 17.6 kDa class I heat shock protein 1 (17.6 kDa heat shock protein 1) (AtHsp17.6A),17.8 kDa class I heat shock protein (17.8 kDa heat shock protein) (AtHsp17.8),17.6 kDa class I heat shock protein 2 (17.6 kDa heat shock protein 2) (AtHsp17.6B) cytoplasm [GO:0005737]; protein folding [GO:0006457]; protein oligomerization [GO:0051259]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; protein self-association [GO:0043621]; response to heat [GO:0009408]; response to oxidative stress [GO:0006979],cytoplasm [GO:0005737]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Expressed in seed development and germination from day 16 after pollination to day 4 after imbibition (at protein level). {ECO:0000269|PubMed:11576425}. TISSUE SPECIFICITY: Expressed ubiquitously at low levels under normal physiological conditions. {ECO:0000269|PubMed:21730198}. locus:2025921;,locus:2024997;,locus:2042977; AT1G59860,AT1G07400,AT2G29500 heat shock protein NA NA NA NA NA NA NA ENOG411E4D9 KELP O65155 KELP_ARATH RNA polymerase II transcriptional coactivator KELP FUNCTION: General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA (By similarity). {ECO:0000250}. 19177 RNA polymerase II transcriptional coactivator KELP nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; positive regulation of transcription initiation from RNA polymerase II promoter [GO:0060261]; transcription, DNA-templated [GO:0006351] locus:2123416; AT4G10920 RNA polymerase II transcriptional coactivator Os01g0706000 protein (Transcriptional coactivator-like) (cDNA clone:006-210-D10, full insert sequence) (cDNA clone:006-303-D08, full insert sequence) (cDNA clone:J023055M24, full insert sequence) Q94JE5 Q94JE5_ORYSJ Os01g0706000 OSNPB_010706000 P0684B02.35 P0692C11.16 ENOG411DQ0A GRIK2,GRIK1 Q5HZ38,Q93V58,F4J5I5 GRIK2_ARATH,GRIK1_ARATH,F4J5I5_ARATH Serine/threonine-protein kinase GRIK2 (EC 2.7.11.1) (Protein GEMINIVIRUS REP INTERACTING KINASE 2) (Protein GRIK2) (SnRK1-activating protein kinase 1) (AtSnAK1),Serine/threonine-protein kinase GRIK1 (EC 2.7.11.1) (Protein GEMINIVIRUS REP INTERACTING KINASE 1) (Protein GRIK1) (SnRK1-activating protein kinase 2) (AtSnAK2),Geminivirus rep interacting kinase 1 FUNCTION: Activates SnRK1.1/KIN10 and SnRK1.2/KIN11 by phosphorylation of their activation-loop 'Thr-198' and 'Thr-176', respectively. Required for the regulation by SnRK1 kinases of the transcription of a large set of genes, the modification the activity of metabolic enzymes, and the control of various nutrient-responsive cellular developmental processes. {ECO:0000269|PubMed:17041027, ECO:0000269|PubMed:17237223, ECO:0000269|PubMed:19339507, ECO:0000269|PubMed:20164192}.,FUNCTION: Activates SnRK1.1/KIN10 and SnRK1.2/KIN11 by phosphorylation of their activation-loop 'Thr-198' and 'Thr-176', respectively. Required for the regulation by SnRK1 kinases of the transcription of a large set of genes, the modification the activity of metabolic enzymes, and the control of various nutrient-responsive cellular developmental processes. {ECO:0000269|PubMed:12172024, ECO:0000269|PubMed:17041027, ECO:0000269|PubMed:17237223, ECO:0000269|PubMed:19339507, ECO:0000269|PubMed:20164192}. MISCELLANEOUS: Functionally able to complement the yeast elm1 sak1 tos3 triple mutant. R-ATH-442717; 2.7.11.1 45652,44573,44198 Serine/threonine-protein kinase GRIK2 (EC 2.7.11.1) (Protein GEMINIVIRUS REP INTERACTING KINASE 2) (Protein GRIK2) (SnRK1-activating protein kinase 1) (AtSnAK1),Serine/threonine-protein kinase GRIK1 (EC 2.7.11.1) (Protein GEMINIVIRUS REP INTERACTING KINASE 1) (Protein GRIK1) (SnRK1-activating protein kinase 2) (AtSnAK2),Geminivirus rep interacting kinase 1 intracellular [GO:0005622]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; protein phosphorylation [GO:0006468]; response to virus [GO:0009615]; viral process [GO:0016032],cytoplasm [GO:0005737]; intracellular [GO:0005622]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; response to virus [GO:0009615]; viral process [GO:0016032],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] DEVELOPMENTAL STAGE: Highly expressed in young leaf and floral tissues but not expressed in mature tissues (at protein level). {ECO:0000269|PubMed:17041027}.,DEVELOPMENTAL STAGE: Highly expressed in young leaf and floral tissues but not expressed in mature tissues (at protein level). {ECO:0000269|PubMed:12172024, ECO:0000269|PubMed:17041027, ECO:0000269|PubMed:19339507}. TISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordium and emerging petiole (at protein level). {ECO:0000269|PubMed:17041027}. locus:2175113;,locus:2096930; AT5G60550,AT3G45240 serine threonine-protein kinase DDB_G0279405-like Os03g0711300 protein (Protein kinase domain containing protein, expressed),Os03g0711300 protein (Fragment) Q10E16,A0A0P0W242 Q10E16_ORYSJ,A0A0P0W242_ORYSJ Os03g0711300 LOC_Os03g50330 Os03g0711300 OsJ_12316 OSNPB_030711300,Os03g0711300 OSNPB_030711300 ENOG411DQ0C AP3BA,PAT2 Q9M2T1,F4IWW1 AP3BA_ARATH,F4IWW1_ARATH AP3-complex subunit beta-A (Adaptor protein complex AP-3 subunit beta-A) (Adaptor-related protein complex 3 subunit beta-A) (Beta-3B-adaptin) (Clathrin assembly protein complex 3 beta-A large chain) (Protein-affected trafficking 2),AP-3 complex subunit beta DISRUPTION PHENOTYPE: No obvious phenotype except defective lytic vacuoles with altered morphology and accumulation of proteins. {ECO:0000269|PubMed:19884248, ECO:0000269|PubMed:20729380, ECO:0000269|PubMed:21670741}. Low penetrance of seedling lethality; Low germination rate over time; Short roots; Few lateral roots; Abnormal inflorescence stem gravitropism-J. Friml-2010 FUNCTION: Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles. {ECO:0000269|PubMed:20729380, ECO:0000269|PubMed:21670741}. 108650,122988 AP3-complex subunit beta-A (Adaptor protein complex AP-3 subunit beta-A) (Adaptor-related protein complex 3 subunit beta-A) (Beta-3B-adaptin) (Clathrin assembly protein complex 3 beta-A large chain) (Protein-affected trafficking 2),AP-3 complex subunit beta AP-3 adaptor complex [GO:0030123]; cytoplasmic vesicle membrane [GO:0030659]; Golgi apparatus [GO:0005794]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],AP-3 adaptor complex [GO:0030123]; Golgi to vacuole transport [GO:0006896]; intracellular protein transport [GO:0006886]; lytic vacuole organization [GO:0080171]; regulation of intracellular pH [GO:0051453] locus:2099961; AT3G55480 AP3-complex subunit Os01g0973300 protein (Fragment) Q0JFL8 Q0JFL8_ORYSJ Os01g0973300 Os01g0973300 OSNPB_010973300 ENOG411DQ0B GOLS1 O22893 GOLS1_ARATH Galactinol synthase 1 (AtGolS1) (GolS-1) (EC 2.4.1.123) DISRUPTION PHENOTYPE: Impaired raffinose accumulation in response to heat stress. {ECO:0000269|PubMed:15466240}. FUNCTION: Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. Promotes plant stress tolerance such as heat, chilling, salinity and methylviologen (MV), a superoxide radical generating drug, by mediating raffinose accumulation, an osmoprotective substance. {ECO:0000269|PubMed:15466240, ECO:0000269|PubMed:18502973}. 2.4.1.123; 2.4.1.123 39596 Galactinol synthase 1 (AtGolS1) (GolS-1) (EC 2.4.1.123) cytoplasm [GO:0005737]; inositol 3-alpha-galactosyltransferase activity [GO:0047216]; metal ion binding [GO:0046872]; galactose metabolic process [GO:0006012]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Accumulates in mature seeds. Expressed in seedlings (axes and cotyledons), meristems, vascular tissues and emerging lateral roots. Present in abscission zones. {ECO:0000269|PubMed:11846875, ECO:0000269|PubMed:15466240}. locus:2062860; AT2G47180 galactinol synthase Hexosyltransferase (EC 2.4.1.-) Q10MB0 Q10MB0_ORYSJ LOC_Os03g20120 Os03g0316200 OSNPB_030316200 ENOG411DQ0E MTM1,MTM2 F4J3T8,F4JWB3 MYTM1_ARATH,MYTM2_ARATH Phosphatidylinositol-3-phosphatase myotubularin-1 (AtMTM1) (Phosphatidylinositol-3,5-bisphosphate 3-phosphatase) (EC 3.1.3.95) (Phosphatidylinositol-3-phosphate phosphatase) (EC 3.1.3.64),Phosphatidylinositol-3-phosphatase myotubularin-2 (AtMTM2) (Phosphatidylinositol-3,5-bisphosphate 3-phosphatase) (EC 3.1.3.95) (Phosphatidylinositol-3-phosphate phosphatase) (EC 3.1.3.64) DISRUPTION PHENOTYPE: No visible phenotype in normal conditions. Impaired accumulation of PtdIns5P in response to stress such as dehydration, leading to an increased resistance. {ECO:0000269|PubMed:20967218, ECO:0000269|PubMed:22324391}.,DISRUPTION PHENOTYPE: No visible phenotype in both normal and dehydration conditions. {ECO:0000269|PubMed:22324391}. FUNCTION: Phosphatase with phosphoinositide 3'-phosphatase activity that can use phosphatidylinositol-3-phosphate (PtdIns3P) and phosphatidylinositol-3,5-diphosphate (PtdIns3,5P(2)) as substrates and produces phosphatidylinositol-5-phosphate (PtdIns5P); participates in pathway(s) that transfer gene regulatory signals to the nucleus. Required for recovery after water deprivation, via the accumulation of PtdIns5P upon dehydration; high PtdIns5P levels mediate ATX1 cytoplasmic localization, thus down-regulating the expression of ATX1-dependent genes. Confers sensitivity to soil-water-deficit stress. {ECO:0000269|PubMed:19901554, ECO:0000269|PubMed:20967218, ECO:0000269|PubMed:22324391}.,FUNCTION: Phosphatase with phosphoinositide 3'-phosphatase activity that can use phosphatidylinositol-3-phosphate (PtdIns3P) and phosphatidylinositol-3,5-diphosphate (PtdIns3,5P(2)) as substrates and produces phosphatidylinositol-5-phosphate (PtdIns5P); participates in pathway(s) that transfer gene regulatory signals to the nucleus. {ECO:0000269|PubMed:22324391}. R-ATH-1632852;R-ATH-1660499;R-ATH-1660516;R-ATH-1660517; 3.1.3.95; 3.1.3.64 93378,92588 Phosphatidylinositol-3-phosphatase myotubularin-1 (AtMTM1) (Phosphatidylinositol-3,5-bisphosphate 3-phosphatase) (EC 3.1.3.95) (Phosphatidylinositol-3-phosphate phosphatase) (EC 3.1.3.64),Phosphatidylinositol-3-phosphatase myotubularin-2 (AtMTM2) (Phosphatidylinositol-3,5-bisphosphate 3-phosphatase) (EC 3.1.3.95) (Phosphatidylinositol-3-phosphate phosphatase) (EC 3.1.3.64) cytoplasmic vesicle [GO:0031410]; endosome membrane [GO:0010008]; phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity [GO:0052629]; phosphatidylinositol-3-phosphatase activity [GO:0004438]; protein tyrosine phosphatase activity [GO:0004725]; cellular response to water deprivation [GO:0042631]; intracellular signal transduction [GO:0035556]; lipid metabolic process [GO:0006629]; regulation of response to water deprivation [GO:2000070],cytoplasm [GO:0005737]; phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity [GO:0052629]; phosphatidylinositol-3-phosphatase activity [GO:0004438]; protein tyrosine phosphatase activity [GO:0004725]; intracellular signal transduction [GO:0035556]; lipid metabolic process [GO:0006629] DEVELOPMENTAL STAGE: Expressed in young seedlings, especially at the tip of the growing shoot meristems. Later observed in roots and in aerial parts. Weakly expressed in leaves with local higher levels in the trichomes, hydathodes and in cotyledon veins. Present at low levels in flowers with higher accumulation in cells at organ-stem junctions, as well as in the septum and the funiculi of the developing siliques. Also observed in a diffuse pattern, appearing as patches along the stem but also concentrated at the peduncle. {ECO:0000269|PubMed:22324391}.,DEVELOPMENTAL STAGE: Expressed in young seedlings, especially at the tip of the growing shoot meristems. Later observed in roots and in aerial parts. Weakly expressed in leaves with local higher levels in the trichomes and in cotyledon veins. Present at low levels in flowers with higher accumulation in cells at organ-stem junctions. Restricted to the developing peduncle. {ECO:0000269|PubMed:22324391}. TISSUE SPECIFICITY: Mostly expressed in siliques and leaves (including hydathodes), and, to a lower extent, in flowers and roots. {ECO:0000269|PubMed:22324391}.,TISSUE SPECIFICITY: Mostly expressed in flowers and roots, and, to a lower extent, in siliques and leaves. {ECO:0000269|PubMed:22324391}. locus:2075850;,locus:2184402; AT3G10550,AT5G04540 myotubularin-related protein Os08g0556700 protein (Fragment) A0A0P0XIA6 A0A0P0XIA6_ORYSJ Os08g0556700 OSNPB_080556700 ENOG411DQ0D BZIP23,BZIP19 Q8GTS2,Q8VY76 BZP23_ARATH,BZP19_ARATH Basic leucine zipper 23 (AtbZIP23) (bZIP protein 23),Basic leucine zipper 19 (AtbZIP19) (bZIP protein 19) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:20479230, PubMed:26306426). Mutant seedlings grown under normal conditions accumulate reduced levels of zinc in roots. Mutant seedlings grown in zinc-depleted medium have reduced root length (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. double mutant seedlings grown on zinc-deficient agar media showed a zinc-deficiency hypersensitive phenotype visible as very poor growth and strong chlorosis. Sensitive to limited zinc-M. Aarts-2010 FUNCTION: Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.,FUNCTION: Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. 27300,28666 Basic leucine zipper 23 (AtbZIP23) (bZIP protein 23),Basic leucine zipper 19 (AtbZIP19) (bZIP protein 19) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to zinc ion [GO:0010043]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to zinc ion [GO:0010043]; transcription, DNA-templated [GO:0006351] locus:2059851;,locus:2131626; AT2G16770,AT4G35040 Transcription factor Os06g0716800 protein (Transcription factor-like) (cDNA clone:001-016-A09, full insert sequence) (cDNA clone:J023099K10, full insert sequence) Q5Z8P6 Q5Z8P6_ORYSJ Os06g0716800 OsJ_22672 OSNPB_060716800 P0481E08.37 P0541C02.4 ENOG411DQ0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) Q6AT33 IAA19_ORYSJ IAA19 Os05g0559400 LOC_Os05g48590 OsJ_19520 OSJNBa0001A14.14 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411DQ0F LECRKS2 O48837 LRKS2_ARATH Receptor like protein kinase S.2 (LecRK-S.2) (EC 2.7.11.1) 2.7.11.1 96086 Receptor like protein kinase S.2 (LecRK-S.2) (EC 2.7.11.1) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cellular response to jasmonic acid stimulus [GO:0071395]; cellular response to salicylic acid stimulus [GO:0071446]; response to bacterium [GO:0009617]; response to wounding [GO:0009611] locus:2046457; AT2G32800 receptor like protein kinase Os11g0445300 protein (Probable protein kinase [imported]-Arabidopsis thaliana) (Protein kinase family protein, putative, expressed) (cDNA clone:J033046C19, full insert sequence) Q53KU9 Q53KU9_ORYSJ LOC_Os11g25860 Os11g0445300 OSNPB_110445300 ENOG411DQ0I EML4,EML3 Q08A72,F4K2F0,A0A1P8BGG0,A0A1P8BGG3 EML4_ARATH,EML3_ARATH,A0A1P8BGG0_ARATH,A0A1P8BGG3_ARATH Protein EMSY-LIKE 4 (AtEML4),Protein EMSY-LIKE 3 (AtEML3),Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein DISRUPTION PHENOTYPE: Reduced resistance to Hyaloperonospora arabidopsidis isolate Hiks1. {ECO:0000269|PubMed:21830950}. FUNCTION: Probably involved in the regulation of chromatin states (Probable). Contributes to RPP7-mediated and basal immunity, especially against Hyaloperonospora arabidopsidis isolate Hiks1 (PubMed:21830950). {ECO:0000269|PubMed:21830950, ECO:0000305|PubMed:21830950}.,FUNCTION: Probably involved in the regulation of chromatin states (Probable). Contributes to basal immunity (PubMed:21830950). {ECO:0000269|PubMed:21830950, ECO:0000305|PubMed:21830950}. 47454,43653,36872,31479 Protein EMSY-LIKE 4 (AtEML4),Protein EMSY-LIKE 3 (AtEML3),Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein nucleus [GO:0005634]; defense response to fungus [GO:0050832],integral component of membrane [GO:0016021]; defense response to fungus [GO:0050832],defense response to fungus [GO:0050832] locus:2050594;,locus:2182345; AT2G44440,AT5G13020 emsy N terminus domain-containing protein ENT domain-containing protein Os08g0328300 protein (cDNA clone:001-123-A04, full insert sequence),Os09g0279000 protein (Fragment) Q6Z0H6,A0A0P0XLN5 Q6Z0H6_ORYSJ,A0A0P0XLN5_ORYSJ Os08g0328300 OSJNBa0049I01.19 OSNPB_080328300 P0670E08.30,Os09g0279000 OSNPB_090279000 ENOG411DQ0H Q9M8W9 PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial 58706 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2103075; AT3G04130 Pentatricopeptide repeat-containing protein Os02g0601600 protein (cDNA, clone: J065091K02, full insert sequence) A3A8S2 A3A8S2_ORYSJ Os02g0601600 OsJ_07414 OSNPB_020601600 ENOG411DQ0K MEE44 F4JH01,A0A1P8B522 F4JH01_ARATH,A0A1P8B522_ARATH Nucleotidyltransferase family protein 163797,120785 Nucleotidyltransferase family protein nucleotidyltransferase activity [GO:0016779]; embryo development ending in seed dormancy [GO:0009793],transferase activity [GO:0016740] locus:2126891; AT4G00060 Cid1 family poly A polymerase Os06g0669275 protein A0A0P0WZT3 A0A0P0WZT3_ORYSJ Os06g0669275 OSNPB_060669275 ENOG411DQ0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase Os05g0335401 protein (Fragment),Phospholipid-transporting ATPase (EC 3.6.3.1) A0A0P0WKV7,A0A0P0Y1P2 A0A0P0WKV7_ORYSJ,A0A0P0Y1P2_ORYSJ Os05g0335401 OSNPB_050335401,Os11g0446500 OSNPB_110446500 ENOG411DQ0N LPAT1 Q8GXU8 LPAT1_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1) (Protein EMBRYO DEFECTIVE 1995) Embryo defective; Cotyledon-D. Meinke-2004 FUNCTION: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position. Has preference for C-16-CoA substrates compared to C-18-CoA substrates. Essential for embryo development during the transition from the globular to the heart stage when chloroplasts begin to form. {ECO:0000269|PubMed:14976237, ECO:0000269|PubMed:15169931}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 2/3. MetaCyc:AT4G30580-MONOMER; R-ATH-1483166;R-ATH-163765;R-ATH-6798695; 2.3.1.51; 2.3.1.51 39395 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1) (Protein EMBRYO DEFECTIVE 1995) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; 1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; CDP-diacylglycerol biosynthetic process [GO:0016024]; embryo development ending in seed dormancy [GO:0009793]; phosphatidylglycerol biosynthetic process [GO:0006655] DEVELOPMENTAL STAGE: Expression transiently increases in siliques 4 hours after flowering. {ECO:0000269|PubMed:15169931}. TISSUE SPECIFICITY: Widely expressed. Expressed at higher level in leaves. Expressed at lower level in silique walls compared to leaves. {ECO:0000269|PubMed:14976237, ECO:0000269|PubMed:15169931}. locus:2118681; AT4G30580 1-acyl-sn-glycerol-3-phosphate acyltransferase 1 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Q337H3 Q337H3_ORYSJ Os10g0497100 LOC_Os10g35390 Os10g0497100 OSNPB_100497100 ENOG411DQ0Q HAM1,HAM2 Q9FLF7,Q9LXD7 MYST1_ARATH,MYST2_ARATH Histone acetyltransferase of the MYST family 1 (EC 2.3.1.48) (Histone acetyltransferase of the GNAT/MYST superfamily 4) (MYST-like histone acetyltransferase 1),Histone acetyltransferase of the MYST family 2 (EC 2.3.1.48) (Histone acetyltransferase of the GNAT/MYST superfamily 5) (MYST-like histone acetyltransferase 2) DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with HAM2. Ham1 and ham2 double mutants are lethal. {ECO:0000269|PubMed:19040736}.,DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with HAM1. Ham1 and ham2 double mutants are lethal. {ECO:0000269|PubMed:19040736}. FUNCTION: Histone acetyltransferase which may be involved in transcriptional activation. Acetylates 'Lys-5' of histone H4 (H4K5ac) (PubMed:17877703, PubMed:19040736, PubMed:22170978, PubMed:23273925). Essential for gametophyte development (PubMed:19040736). Involved in DNA repair after UV-B exposure (PubMed:22170978). Negative regulator of flowering controlling the H4K5ac levels in the FLC chromatin (PubMed:23273925). {ECO:0000269|PubMed:17877703, ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:22170978, ECO:0000269|PubMed:23273925}.,FUNCTION: Histone acetyltransferase which may be involved in transcriptional activation. Acetylates 'Lys-5' of histone H4 (H4K5ac) (PubMed:16648464, PubMed:17877703). Essential for gametophyte development (PubMed:19040736). Negative regulator of flowering controlling the H4K5ac levels in the FLC chromatin (PubMed:23273925). {ECO:0000269|PubMed:16648464, ECO:0000269|PubMed:17877703, ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:23273925}. MISCELLANEOUS: Knockdown expression of both HAM1 and HAM2 results in earlier flowering. {ECO:0000269|PubMed:23273925}. R-ATH-2559586;R-ATH-5693548;R-ATH-5693565;R-ATH-5693607;R-ATH-5693616; 2.3.1.48; 2.3.1.48 51438,51367 Histone acetyltransferase of the MYST family 1 (EC 2.3.1.48) (Histone acetyltransferase of the GNAT/MYST superfamily 4) (MYST-like histone acetyltransferase 1),Histone acetyltransferase of the MYST family 2 (EC 2.3.1.48) (Histone acetyltransferase of the GNAT/MYST superfamily 5) (MYST-like histone acetyltransferase 2) nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; histone acetyltransferase activity (H4-K5 specific) [GO:0043995]; metal ion binding [GO:0046872]; DNA repair [GO:0006281]; regulation of photoperiodism, flowering [GO:2000028]; regulation of transcription, DNA-templated [GO:0006355]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; metal ion binding [GO:0046872]; DNA repair [GO:0006281]; regulation of transcription, DNA-templated [GO:0006355]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in cotyledons, leaves, stems, roots and, at higher levels in developing flowers, particularly in the anthers and gynoecia (PubMed:19040736). Constitutively expressed in all tissues, predominantly in shoot apical meristem (PubMed:23273925). {ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:23273925}. locus:2174764;,locus:2144776; AT5G64610,AT5G09740 histone acetyltransferase Putative MYST-like histone acetyltransferase 1 (EC 2.3.1.48) Q8LI34 MYST1_ORYSJ Os07g0626600 LOC_Os07g43360 OJ1339_F05.128 FUNCTION: Histone acetyltransferase which may be involved in transcriptional activation. {ECO:0000250|UniProtKB:Q9LXD7}. ENOG411DQ0S F4HSJ2 F4HSJ2_ARATH DNA glycosylase superfamily protein 35946 DNA glycosylase superfamily protein DNA-3-methyladenine glycosylase activity [GO:0008725]; base-excision repair [GO:0006284] locus:1006230719; AT1G13635 GMP synthase glutamine-hydrolyzing -like Os08g0489300 protein (Putative 3-methyladenine-DNA glycosylase) (cDNA clone:006-308-E03, full insert sequence),Os08g0489300 protein (cDNA clone:J013026F15, full insert sequence) (cDNA clone:J013123P04, full insert sequence) Q6ZBQ9,B7EB28 Q6ZBQ9_ORYSJ,B7EB28_ORYSJ P0605H02.16-1 P0028A08.39-1 Os08g0489300 OsJ_27747 OSNPB_080489300,Os08g0489300 OSNPB_080489300 ENOG411DQ0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os06g0707300 protein (cDNA clone:J033041C08, full insert sequence),Os08g0426100 protein Q5Z8T5,A0A0P0XG45 Q5Z8T5_ORYSJ,A0A0P0XG45_ORYSJ Os06g0707300 Os06g0707300 OSNPB_060707300 P0018H04.37 P0621D05.25,Os08g0426100 OSNPB_080426100 ENOG411DQ0U PCMP-E88,MEF12 Q9SS83,A0A1I9LQP8 PP220_ARATH,A0A1I9LQP8_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein 115014,117798 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2095289; AT3G09040 Pentatricopeptide repeat-containing protein OSJNBb0070J16.5 protein (OSJNBb0072M01.1 protein) (Os04g0514500 protein) (cDNA clone:J033104I01, full insert sequence),Os05g0325000 protein (Fragment),Os04g0514500 protein (Fragment) Q7XUP0,A0A0P0WKR5,A0A0P0WCF1 Q7XUP0_ORYSJ,A0A0P0WKR5_ORYSJ,A0A0P0WCF1_ORYSJ Os04g0514500 OSJNBb0070J16.5 OSJNBb0072M01.1 OSNPB_040514500,Os05g0325000 OSNPB_050325000,Os04g0514500 OSNPB_040514500 ENOG411DQ0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily High-affinity nitrate transporter 2.2 (OsNRT2.2),High-affinity nitrate transporter 2.1 (OsNRT2.1) P0DKH0,P0DKG9 NRT22_ORYSJ,NRT21_ORYSJ NRT2.2 Os02g0112600 LOC_Os02g02190 OJ1399_H05.7 OsJ_05080 P0501G04.36,NRT2.1 Os02g0112100 LOC_Os02g02170 OJ1399_H05.5 P0501G04.34 FUNCTION: Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NAR2.1. Imports nitrate with high affinity when expressed with NAR2.1 in a heterologous system (Xenopus oocytes). {ECO:0000269|PubMed:21220781, ECO:0000269|PubMed:21486304, ECO:0000269|Ref.6}.,FUNCTION: Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NAR2.1. Imports nitrate with high affinity when expressed with NAR2.1 in a heterologous system (Xenopus oocytes). {ECO:0000269|PubMed:21220781, ECO:0000269|PubMed:21486304, ECO:0000269|Ref.1}. MISCELLANEOUS: Plants over-expressing NRT2.2 have accelerated growth under low nitrate conditions (Ref.6).,MISCELLANEOUS: Plants over-expressing NRT2.1 have accelerated growth under low nitrate conditions (Ref.1). ENOG411DQ0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0008M17.14 protein (Os04g0616000 protein) Q7XTS1 Q7XTS1_ORYSJ Os04g0616000 OSJNBa0008M17.14 OSNPB_040616000 ENOG411DQ0Y A0A1P8AUB3 A0A1P8AUB3_ARATH PLATZ transcription factor family protein 24964 PLATZ transcription factor family protein PLATZ transcription factor Os06g0624900 protein (Putative zinc-binding protein) (cDNA clone:001-039-F02, full insert sequence),Os06g0624900 protein (Putative zinc-binding protein) (cDNA clone:J013030D23, full insert sequence) (cDNA clone:J013099A07, full insert sequence) Q69TZ1,Q69TZ2 Q69TZ1_ORYSJ,Q69TZ2_ORYSJ Os06g0624900 OSJNBa0029G06.28-2 OSNPB_060624900,Os06g0624900 OSJNBa0029G06.28-1 OSNPB_060624900 ENOG411DQ0X F4KHI7 F4KHI7_ARATH Man1-Src1p-carboxy-terminal domain protein 44390 Man1-Src1p-carboxy-terminal domain protein endoplasmic reticulum [GO:0005783]; integral component of nuclear inner membrane [GO:0005639]; chromatin DNA binding [GO:0031490]; meiotic attachment of telomere to nuclear envelope [GO:0070197]; nuclear envelope organization [GO:0006998] locus:2142310; AT5G46560 Man1-Src1p-C-terminal domain Os03g0100050 protein A0A0P0VRY4 A0A0P0VRY4_ORYSJ Os03g0100050 OSNPB_030100050 ENOG411DQ0Z MSR2,AT3G21190.1 Q0WPA5,Q9LU40 Q0WPA5_ARATH,Q9LU40_ARATH O-fucosyltransferase family protein (Uncharacterized protein At1g51630),Mannan synthesis related protein 1 (O-fucosyltransferase family protein) (Uncharacterized protein At3g21190) FUNCTION: Glycosyltransferase involved in mannan biosynthesis. {ECO:0000269|PubMed:22966747}. 47142,46799 O-fucosyltransferase family protein (Uncharacterized protein At1g51630),Mannan synthesis related protein 1 (O-fucosyltransferase family protein) (Uncharacterized protein At3g21190) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2017652;,locus:2094731; AT1G51630,AT3G21190 growth regulator related protein Os09g0498800 protein (cDNA clone:J023058K10, full insert sequence) Q0J0R2 Q0J0R2_ORYSJ Os09g0498800 Os09g0498800 OsJ_29893 OSNPB_090498800 ENOG411DQ00 ITPK1 Q9SBA5 ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (AtItpk-1) (Inositol-triphosphate 5/6-kinase 1) (Ins(1,3,4)P(3) 5/6-kinase 1) (EC 2.7.1.159) DISRUPTION PHENOTYPE: Low inositol hexakisphosphate (phytate) levels in seed tissue. {ECO:0000269|PubMed:21698461}. FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not (By similarity). Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway (PubMed:9126335). {ECO:0000250|UniProtKB:Q13572, ECO:0000269|PubMed:9126335}. ARA:AT5G16760-MONOMER;MetaCyc:AT5G16760-MONOMER; R-ATH-1855167;R-ATH-1855204;R-ATH-983231; 2.7.1.159; 2.7.1.134; 2.7.1.159 36220 Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (AtItpk-1) (Inositol-triphosphate 5/6-kinase 1) (Ins(1,3,4)P(3) 5/6-kinase 1) (EC 2.7.1.159) cytosol [GO:0005829]; ATP binding [GO:0005524]; inositol tetrakisphosphate 1-kinase activity [GO:0047325]; inositol-1,3,4-trisphosphate 5-kinase activity [GO:0052726]; inositol-1,3,4-trisphosphate 6-kinase activity [GO:0052725]; magnesium ion binding [GO:0000287]; inositol phosphorylation [GO:0052746]; inositol trisphosphate metabolic process [GO:0032957]; myo-inositol hexakisphosphate biosynthetic process [GO:0010264] TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:23595027}. locus:2148990; AT5G16760 Inositol-tetrakisphosphate 1-kinase Inositol-tetrakisphosphate 1-kinase 5 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 5) (Inositol-triphosphate 5/6-kinase 5) (Ins(1,3,4)P(3) 5/6-kinase 5) (OsITP5/6K-5) (OsITPK5) (EC 2.7.1.159) (OsITL3) Q7XBW0 ITPK5_ORYSJ ITPK5 Os10g0576100 LOC_Os10g42550 OSJNBa0027L23.5 FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000250|UniProtKB:Q84Y01}. ENOG411DQ03 PANK2 Q8L5Y9,F4JTJ6 PANK2_ARATH,F4JTJ6_ARATH Pantothenate kinase 2 (AtPANK2) (EC 2.7.1.33) (Pantothenic acid kinase 2),Pantothenate kinase 2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but homozygous double mutants pank1-1 and pank2-1 are embryonic lethal. {ECO:0000269|PubMed:16897480}. The mutant siliques contained a percentage of shriveled seed remnants which manifested as gaps in the developing line of green seeds.,embryo lethal. FUNCTION: Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration. Functionally redudant with PANK1. {ECO:0000269|PubMed:16897480}.,FUNCTION: Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration. {ECO:0000256|PIRNR:PIRNR036939}. PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5. ARA:AT4G32180-MONOMER;MetaCyc:AT4G32180-MONOMER; 2.7.1.33 99640,86978 Pantothenate kinase 2 (AtPANK2) (EC 2.7.1.33) (Pantothenic acid kinase 2),Pantothenate kinase 2 cytosol [GO:0005829]; ATP binding [GO:0005524]; pantothenate kinase activity [GO:0004594]; coenzyme A biosynthetic process [GO:0015937],ATP binding [GO:0005524]; pantothenate kinase activity [GO:0004594]; coenzyme A biosynthetic process [GO:0015937] TISSUE SPECIFICITY: Highly expressed in leaves and developing seeds. Expressed in roots, stems and flowers. {ECO:0000269|PubMed:16897480}. locus:2116490; AT4G32180 pantothenate kinase Pantothenate kinase 2 (EC 2.7.1.33) (Pantothenic acid kinase 2),Os09g0533100 protein (Fragment) Q0J035,A0A0P0XPM8 PANK2_ORYSJ,A0A0P0XPM8_ORYSJ Os09g0533100 LOC_Os09g36270 OJ1112_E07.4 P0515E01.23,Os09g0533100 OSNPB_090533100 FUNCTION: Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration (By similarity). {ECO:0000250}. ENOG411DQ02 IP5P10,MUG13.16 A8MR21,A0A1P8BGP3 IP5PA_ARATH,A0A1P8BGP3_ARATH Type I inositol polyphosphate 5-phosphatase 10 (At5PTase10) (EC 3.1.3.-),DNAse I-like superfamily protein ARA:AT5G04980-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.- 52542,45486 Type I inositol polyphosphate 5-phosphatase 10 (At5PTase10) (EC 3.1.3.-),DNAse I-like superfamily protein hydrolase activity [GO:0016787]; phosphatidylinositol dephosphorylation [GO:0046856] locus:2175344; AT5G04980 type I inositol-145-trisphosphate 5-phosphatase CVP2-like 'putative inositol-1, 4, 5-trisphosphate 5-phosphatase (Os05g0489000 protein),Inositol-1, 4, 5-trisphosphate 5-phosphatase-like protein (Os01g0814200 protein),Os01g0814200 protein Q6AVN0,Q5N766,A0A0P0V9M8 Q6AVN0_ORYSJ,Q5N766_ORYSJ,A0A0P0V9M8_ORYSJ Os05g0489000 Os05g0489000 OJ1119_H02.13 OSNPB_050489000,OSJNBa0085D07.24-1 Os01g0814200 OSNPB_010814200,Os01g0814200 OSNPB_010814200 ENOG411DQ05 CHR4 F4KBP5 CHR4_ARATH Protein CHROMATIN REMODELING 4 (AtCHR4) (EC 3.6.4.-) (Protein PICKLE RELATED 1) FUNCTION: Chromatin-remodeling protein that binds DNA through histones and regulates gene transcription. May specifically recognize and bind trimethylated 'Lys-27' (H3K27me3) and non-methylated 'Lys-4' of histone H3 (By similarity). Probable chromatin remodeling factor. {ECO:0000250|UniProtKB:Q8TDI0, ECO:0000303|PubMed:16547115}. 3.6.4.- 247919 Protein CHROMATIN REMODELING 4 (AtCHR4) (EC 3.6.4.-) (Protein PICKLE RELATED 1) nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; covalent chromatin modification [GO:0016569] locus:2156364; AT5G44800 DUF1087 Os07g0497100 protein (Fragment),Os07g0497000 protein (Fragment) Q0D6A3,Q0D6A4 Q0D6A3_ORYSJ,Q0D6A4_ORYSJ Os07g0497100 Os07g0497100 OSNPB_070497100,Os07g0497000 Os07g0497000 OSNPB_070497000 ENOG411DQ04 BRL2 Q9ZPS9 BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) Abnormal leaf venation. Reduced number of leaf veins. Early leaf senescence-T. Nelson-2002 FUNCTION: Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide. {ECO:0000269|PubMed:12417696, ECO:0000269|PubMed:19000166}. 2.7.11.1 125676 Serine/threonine-protein kinase BRI1-like 2 (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; auxin-activated signaling pathway [GO:0009734]; brassinosteroid mediated signaling pathway [GO:0009742]; leaf vascular tissue pattern formation [GO:0010305]; phloem transport [GO:0010233]; xylem and phloem pattern formation [GO:0010051] TISSUE SPECIFICITY: Expressed in provascular and procambial sites throughout plant development. Expressed throughout globe- to heart-staged embryos. Then, it is restricted to procambial cells by the late torpedo stage, and this pattern persists throughout the duration of embryo development. After germination, it is expressed not only in procambial cells throughout the plant but also in all lateral organ primordia before the onset of vascularization. {ECO:0000269|PubMed:12417696, ECO:0000269|PubMed:19000166}. locus:2041150; AT2G01950 serine threonine-protein kinase BRI1-like Brassinosteroid LRR receptor kinase BRL2 (EC 2.7.11.1) (BRI1-like receptor kinase 2) Q7G768 BRL2_ORYSJ BRL2 Os10g0114400 LOC_Os10g02500 OJ1014H12.3 OsJ_34509 OSJNBa0092N12.12 FUNCTION: May be involved in brassenosteroid (BR) perception. {ECO:0000250|UniProtKB:Q942F3}. ENOG411DQ07 NAC083 Q9FY93 NAC83_ARATH NAC domain-containing protein 83 (ANAC083) (Protein VND-INTERACTING 2) DISRUPTION PHENOTYPE: Accelerated leaf aging. {ECO:0000269|PubMed:21673078}. FUNCTION: Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. MISCELLANEOUS: Over-expression of NAC083 inhibits protoxylem vessel formation in roots. {ECO:0000269|PubMed:20388856}. 28570 NAC domain-containing protein 83 (ANAC083) (Protein VND-INTERACTING 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; leaf senescence [GO:0010150]; negative regulation of transcription, DNA-templated [GO:0045892]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351]; viral process [GO:0016032]; xylem development [GO:0010089] DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. locus:2179877; AT5G13180 nac domain No apical meristem protein, expressed (Os12g0477400 protein) (cDNA, clone: J100046N20, full insert sequence) Q2QQZ6 Q2QQZ6_ORYSJ LOC_Os12g29330 Os12g0477400 OSNPB_120477400 ENOG411DQ06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os02g0769800 protein (cDNA clone:001-109-D01, full insert sequence) Q0DX79 Q0DX79_ORYSJ Os02g0769800 Os02g0769800 OSNPB_020769800 ENOG411DQ09 UBC22 Q9FF66 UBC22_ARATH Ubiquitin-conjugating enzyme E2 22 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 22) (Ubiquitin carrier protein 22) FUNCTION: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. {ECO:0000269|PubMed:16339806}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000255|PROSITE-ProRule:PRU00388}. R-ATH-8866652; 2.3.2.23 27399 Ubiquitin-conjugating enzyme E2 22 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 22) (Ubiquitin carrier protein 22) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Expressed in seeds, pistils, siliques, hypocotyls and leaves. {ECO:0000269|PubMed:16339806}. locus:2175359; AT5G05080 ubiquitin-conjugating enzyme Os06g0660700 protein (Fragment) A0A0P0WZL6 A0A0P0WZL6_ORYSJ Os06g0660700 OSNPB_060660700 ENOG411EA7N HIPP25 O49613 HIP25_ARATH Heavy metal-associated isoprenylated plant protein 25 (AtHIP25) (AtHIPP25) FUNCTION: Heavy-metal-binding protein. Binds cadmium. May be involved in cadmium transport and play a role in cadmium detoxification. {ECO:0000250|UniProtKB:Q9C9A3}. 17162 Heavy metal-associated isoprenylated plant protein 25 (AtHIP25) (AtHIPP25) cytoplasm [GO:0005737]; membrane [GO:0016020]; plasmodesma [GO:0009506]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] TISSUE SPECIFICITY: Expressed in roots, shoot apical meristem, trichomes and flower buds. {ECO:0000269|PubMed:21072340}. locus:2131561; AT4G35060 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411DUW2 GATL6,GATL7 O04253,Q8VYF4 GATL6_ARATH,GATL7_ARATH Probable galacturonosyltransferase-like 6 (EC 2.4.1.-) (Like glycosyl transferase 10),Probable galacturonosyltransferase-like 7 (EC 2.4.1.-) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. ARA:GQT-1113-MONOMER; 2.4.1.- 38962,41120 Probable galacturonosyltransferase-like 6 (EC 2.4.1.-) (Like glycosyl transferase 10),Probable galacturonosyltransferase-like 7 (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489]; polysaccharide biosynthetic process [GO:0000271] locus:2132218;,locus:2081670; AT4G02130,AT3G62660 Galacturonosyltransferase-like Hexosyltransferase (EC 2.4.1.-),Hexosyltransferase (EC 2.4.1.-) (Fragment) Q10MP3,A0A0P0VWH2 Q10MP3_ORYSJ,A0A0P0VWH2_ORYSJ LOC_Os03g18890 Os03g0300900 OsJ_10522 OSNPB_030300900,Os03g0300900 OSNPB_030300900 ENOG411DUW4 YUC6,YUC2 Q8VZ59,Q9SVQ1,A0A1P8B4H6,A0A1P8B4G2,F4JY69 YUC6_ARATH,YUC2_ARATH,A0A1P8B4H6_ARATH,A0A1P8B4G2_ARATH,F4JY69_ARATH Indole-3-pyruvate monooxygenase YUCCA6 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA6) (Protein HYPERTALL1),Indole-3-pyruvate monooxygenase YUCCA2 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA2),Flavin-containing monooxygenase (EC 1.-.-.-),Flavin-binding monooxygenase family protein DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with the other members of the YUCCA family. {ECO:0000269|PubMed:16818609}. FUNCTION: Involved in auxin biosynthesis via the indole-3-pyruvic acid (IPA) pathway. Also able to convert in vitro phenyl pyruvate (PPA) to phenyl acetic acid (PAA). Required for the formation of floral organs and vascular tissues. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in shoots. {ECO:0000269|PubMed:16818609, ECO:0000269|PubMed:17885085, ECO:0000269|PubMed:22025721, ECO:0000269|PubMed:22986790, ECO:0000269|PubMed:23188833}.,FUNCTION: Involved in auxin biosynthesis. Converts the indole-3-pyruvic acid (IPA) produced by the TAA family to indole-3-acetic acid (IAA). Unable to use tryptamine (TAM) as substrate. Required for the formation of floral organs and vascular tissues. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in shoots. {ECO:0000269|PubMed:16818609, ECO:0000269|PubMed:22025721, ECO:0000269|PubMed:22025724}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. ARA:AT4G13260-MONOMER;MetaCyc:AT4G13260-MONOMER; 1.14.13.168; 1.14.13.168,1.-.-.- 46638,46543,34781,34905,48537 Indole-3-pyruvate monooxygenase YUCCA6 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA6) (Protein HYPERTALL1),Indole-3-pyruvate monooxygenase YUCCA2 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA2),Flavin-containing monooxygenase (EC 1.-.-.-),Flavin-binding monooxygenase family protein cytoplasm [GO:0005737]; flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851],flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851],flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661],monooxygenase activity [GO:0004497],flavin adenine dinucleotide binding [GO:0050660]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851] TISSUE SPECIFICITY: Highly expressed in roots but modestly expressed in the cauline leaves and flowers. Expressed in anthers. {ECO:0000269|PubMed:17885085, ECO:0000269|PubMed:18628351}.,TISSUE SPECIFICITY: Expressed in anthers and in the apical gynoecium. {ECO:0000269|PubMed:16818609, ECO:0000269|PubMed:18628351}. locus:2119340;,locus:2179434; AT5G25620,AT4G13260 flavin-containing monooxygenase Flavin-containing monooxygenase (EC 1.-.-.-) B9EZJ8,Q5JM75,A0A0P0WPP9 B9EZJ8_ORYSJ,Q5JM75_ORYSJ,A0A0P0WPP9_ORYSJ Os01g0732700 OsJ_03359 OSNPB_010732700,OSJNBb0036G09.11 Os01g0732700 OSNPB_010732700,Os05g0528600 OSNPB_050528600 ENOG411DUW6 Q9SQZ9 PITH1_ARATH PITH domain-containing protein At3g04780 19670 PITH domain-containing protein At3g04780 locus:2084883; AT3G04780 Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42 sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein Expressed protein (Os03g0795500 protein) (Thioredoxin-like protein 1, putative, expressed) (cDNA clone:J033070H24, full insert sequence) Q6F385 Q6F385_ORYSJ OSJNBb0021G19.12 LOC_Os03g58130 Os03g0795500 OsJ_12942 OSNPB_030795500 ENOG411EA7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411DUWQ EMB1691 Q94AI4,F4JKV6 METL1_ARATH,F4JKV6_ARATH Methyltransferase-like protein 1 (EC 2.1.1.-) (Protein EMBRYO DEFECTIVE 1691),Methyltransferase MT-A70 family protein Embryo defective; Globular-D. Meinke-2003 FUNCTION: Probable methyltransferase. {ECO:0000250}. R-ATH-72203; 2.1.1.- 85846,106361 Methyltransferase-like protein 1 (EC 2.1.1.-) (Protein EMBRYO DEFECTIVE 1691),Methyltransferase MT-A70 family protein methyltransferase activity [GO:0008168]; nucleic acid binding [GO:0003676]; nucleobase-containing compound metabolic process [GO:0006139],cytosol [GO:0005829]; methyltransferase activity [GO:0008168]; nucleic acid binding [GO:0003676]; nucleobase-containing compound metabolic process [GO:0006139] locus:2140503; AT4G09980 methyltransferase-like protein 1-like Os01g0267100 protein (cDNA clone:J013001G08, full insert sequence),MT-A70 family protein, expressed (Os10g0447600 protein) (cDNA clone:J013169F09, full insert sequence),MT-A70 family protein, expressed (Os03g0147700 protein) (cDNA clone:J023070F02, full insert sequence),Os03g0147700 protein (Fragment) Q0JNT2,Q337R2,Q10RS1,A0A0P0VT14 Q0JNT2_ORYSJ,Q337R2_ORYSJ,Q10RS1_ORYSJ,A0A0P0VT14_ORYSJ Os01g0267100 Os01g0267100 OSNPB_010267100,Os10g0447600 LOC_Os10g31030 Os10g0447600 OSNPB_100447600,Os03g0147700 LOC_Os03g05420 OSNPB_030147700,Os03g0147700 OSNPB_030147700 ENOG411DUWU Q9M8M1 Q9M8M1_ARATH Major facilitator superfamily protein (Nodulin-like protein; 38383-40406) (Putative nodulin protein) 60708 Major facilitator superfamily protein (Nodulin-like protein; 38383-40406) (Putative nodulin protein) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; response to karrikin [GO:0080167] locus:2198938; AT1G80530 Nodulin-like Os04g0502800 protein (Fragment),Nodulin-like protein (Os06g0179200 protein) (cDNA clone:J033027I22, full insert sequence),Os08g0254300 protein (Fragment) Q0JBY7,Q8H613,A0A0P0XDK0 Q0JBY7_ORYSJ,Q8H613_ORYSJ,A0A0P0XDK0_ORYSJ Os04g0502800 Os04g0502800 OSNPB_040502800,Os06g0179200 OSJNBa0035I03.15 OSNPB_060179200,Os08g0254300 OSNPB_080254300 ENOG411DUWY CAT4 Q8W4K3 CAAT4_ARATH Cationic amino acid transporter 4, vacuolar FUNCTION: Permease involved in the transport of the cationic amino acids. {ECO:0000250}. R-ATH-352230; 63639 Cationic amino acid transporter 4, vacuolar integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; amino acid transmembrane transporter activity [GO:0015171] TISSUE SPECIFICITY: Expressed in roots, stems, flowers, and leaves. {ECO:0000269|PubMed:15377779}. locus:2079414; AT3G03720 Cationic amino acid transporter Amino acid permease family protein, putative, expressed (Os12g0623500 protein) (cDNA clone:001-032-D03, full insert sequence) (cDNA clone:J013000F01, full insert sequence),Amino acid permease family protein, expressed (Os03g0654400 protein) (Putative amino acid permease) (Putative cationic amino acid transporter) (cDNA clone:J013063A11, full insert sequence),Os03g0654400 protein (Fragment) Q2QLZ1,Q84ST3,A0A0P0W0Z0 Q2QLZ1_ORYSJ,Q84ST3_ORYSJ,A0A0P0W0Z0_ORYSJ LOC_Os12g42850 Os12g0623500 OSNPB_120623500,LOC_Os03g45170 Os03g0654400 OSJNBa0092N01.22 OSJNBb0023J24.16 OSNPB_030654400,Os03g0654400 OSNPB_030654400 ENOG411DUWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain OSJNBa0095E20.4 protein (Os04g0136700 protein) (cDNA clone:J013082B01, full insert sequence) Q7XRN1 Q7XRN1_ORYSJ Os04g0136700 Os04g0136700 OsJ_13658 OSJNBa0095E20.4 OSNPB_040136700 ENOG411DUWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 1-3 (Germin-like protein 8) (OsGER8),Putative germin-like protein 3-2,Os01g0952000 protein (Fragment) Q942A8,Q7XZY1,A0A0P0VCZ6 GL13_ORYSJ,GL32_ORYSJ,A0A0P0VCZ6_ORYSJ GER8 Os01g0952000 LOC_Os01g72290 OsJ_004676 P0431G06.1-1 P0431G06.1-2,Os03g0651800 LOC_Os03g44880 OsJ_011452 OSJNBa0093M23.10,Os01g0952000 OSNPB_010952000 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DUWC CTU2 O65628 CTU2_ARATH Cytoplasmic tRNA 2-thiolation protein 2 FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6/CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. {ECO:0000255|HAMAP-Rule:MF_03054}. PATHWAY: tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03054}. 50399 Cytoplasmic tRNA 2-thiolation protein 2 cytosol [GO:0005829]; sulfurtransferase activity [GO:0016783]; tRNA binding [GO:0000049]; lateral root formation [GO:0010311]; tRNA thio-modification [GO:0034227]; tRNA wobble position uridine thiolation [GO:0002143] locus:2125359; AT4G35910 Cytoplasmic tRNA 2-thiolation protein Cytoplasmic tRNA 2-thiolation protein 2,Os12g0588900 protein (Fragment) Q2QMW0,A0A0P0YBZ3,A0A0N7KUA4 CTU2_ORYSJ,A0A0P0YBZ3_ORYSJ,A0A0N7KUA4_ORYSJ CTU2 NCS2 Os12g0588900 LOC_Os12g39840 OsJ_035256,Os12g0588900 OSNPB_120588900 FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6/CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. {ECO:0000255|HAMAP-Rule:MF_03054}. ENOG411DUWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA polymerase III subunits gamma and tau domain III Os01g0730900 protein (Putative DNA polymerase III subunit gamma/tau),Os05g0529600 protein Q5JNF0,A0A0P0WQ51 Q5JNF0_ORYSJ,A0A0P0WQ51_ORYSJ Os01g0730900 Os01g0730900 OSNPB_010730900 P0435H01.30,Os05g0529600 OSNPB_050529600 ENOG411DUWE RBL5 Q9SSR0 RBL5_ARATH RHOMBOID-like protein 5 (AtRBL5) (EC 3.4.21.-) FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in reproductive organs maturation. {ECO:0000303|PubMed:22007993}. 3.4.21.- 34555 RHOMBOID-like protein 5 (AtRBL5) (EC 3.4.21.-) integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2035190; AT1G52580 rhomboid-like protein 5 NA NA NA NA NA NA NA ENOG411DUWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain containing protein expressed Os02g0681700 protein (Putative serine/threonine-specific protein kinase),Os05g0454400 protein (Fragment),Os02g0681632 protein Q6EPM5,Q0DHP0,B9F1U2 Q6EPM5_ORYSJ,Q0DHP0_ORYSJ,B9F1U2_ORYSJ Os02g0681700 Os02g0681700 OSNPB_020681700 P0663F07.43,Os05g0454400 Os05g0454400 OSNPB_050454400,Os02g0681632 OsJ_07938 OSNPB_020681632 ENOG411DUWG AGAL3,AGAL2,AGAL1 Q8VXZ7,Q8RX86,Q9FT97,A0A1P8BFT2 AGAL3_ARATH,AGAL2_ARATH,AGAL1_ARATH,A0A1P8BFT2_ARATH Alpha-galactosidase 3 (AtAGAL3) (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase 3) (Melibiase),Alpha-galactosidase 2 (AtAGAL2) (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase 2) (Melibiase),Alpha-galactosidase 1 (AtAGAL1) (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase 1) (Melibiase 1),Alpha-galactosidase (EC 3.2.1.22) (Melibiase) DISRUPTION PHENOTYPE: Increased rosette leaves number with a curly surface leaf morphology and delayed flowering. {ECO:0000269|PubMed:16845526}. Delayed up to 3 wks in flowering versus wild type. Strong curly leaf phenotype at later stages of development. Total leaf number in rosette is 17-21 versus 10-13 in the wild type. Curly rosette leaves: Late flowering-K. Krupinska-2007 FUNCTION: May regulate leaf (and possibly other organ) development by functioning in cell wall loosening and cell wall expansion. {ECO:0000250|UniProtKB:Q8RX86}.,FUNCTION: May regulate leaf (and possibly other organ) development by functioning in cell wall loosening and cell wall expansion. {ECO:0000269|PubMed:16845526}. ARA:AT3G56310-MONOMER;,ARA:AT5G08370-MONOMER;,ARA:AT5G08380-MONOMER; R-ATH-1660662;R-ATH-6798695; Galactose metabolism (00052),Glycosphingolipid biosynthesis - globo series (00603),Sphingolipid metabolism (00600),Glycerolipid metabolism (00561) 3.2.1.22 48363,44037,45709,35452 Alpha-galactosidase 3 (AtAGAL3) (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase 3) (Melibiase),Alpha-galactosidase 2 (AtAGAL2) (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase 2) (Melibiase),Alpha-galactosidase 1 (AtAGAL1) (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase 1) (Melibiase 1),Alpha-galactosidase (EC 3.2.1.22) (Melibiase) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; raffinose alpha-galactosidase activity [GO:0052692]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; raffinose alpha-galactosidase activity [GO:0052692]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; leaf morphogenesis [GO:0009965]; positive regulation of flower development [GO:0009911]; response to fungus [GO:0009620],apoplast [GO:0048046]; cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; raffinose alpha-galactosidase activity [GO:0052692]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],raffinose alpha-galactosidase activity [GO:0052692]; carbohydrate metabolic process [GO:0005975] locus:2078416;,locus:2150763;,locus:2150778; AT3G56310,AT5G08370,AT5G08380 alpha-galactosidase Alpha-galactosidase (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase) (Melibiase),Alpha-galactosidase (EC 3.2.1.22) (Melibiase),Alpha-galactosidase (EC 3.2.1.22) (Melibiase) (Fragment),Os10g0493600 protein (Fragment) Q9FXT4,Q7XIV4,A0A0P0XVT5,A0A0P0XW07,A0A0N7KS02,A0A0P0XVP1 AGAL_ORYSJ,Q7XIV4_ORYSJ,A0A0P0XVT5_ORYSJ,A0A0P0XW07_ORYSJ,A0A0N7KS02_ORYSJ,A0A0P0XVP1_ORYSJ Os10g0493600 LOC_Os10g35110 OSJNBa0041P03,Os07g0679300 OJ1205_F02.7 OJ1409_C08.26 OSNPB_070679300,Os10g0493600 OSNPB_100493600,Os10g0492900 OSNPB_100492900 FUNCTION: Hydrolyzes melibiose, raffinose and stachyose in the following decreasing order of reactivity: raffinose, melibiose, stachyose. {ECO:0000269|PubMed:12423882}. ENOG411DUWH Q6ICX5,F4KA27,F4KBG5 Q6ICX5_ARATH,F4KA27_ARATH,F4KBG5_ARATH Alpha-(1,6)-fucosyltransferase (At5g28910),Alpha-(1,6)-fucosyltransferase 61480,47687,61252 Alpha-(1,6)-fucosyltransferase (At5g28910),Alpha-(1,6)-fucosyltransferase integral component of membrane [GO:0016021]; alpha-(1->6)-fucosyltransferase activity [GO:0046921]; N-glycan fucosylation [GO:0036071]; protein N-linked glycosylation [GO:0006487],transferase activity, transferring glycosyl groups [GO:0016757],alpha-(1->6)-fucosyltransferase activity [GO:0046921]; N-glycan fucosylation [GO:0036071]; protein N-linked glycosylation [GO:0006487] locus:2148715;,locus:2148695; AT5G28910,AT5G28960 NA Coatomer (Os02g0809500 protein) (cDNA clone:J023113M12, full insert sequence) Q6K992 Q6K992_ORYSJ Os02g0809500 Os02g0809500 OJ1112_G06.27 OJ1520_C09.39 OsJ_08811 OSNPB_020809500 ENOG411DUWI Q9XHZ7 Q9XHZ7_ARATH F8K7.23 (T26F17.1) (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein) (Uncharacterized protein At1g21790) 32731 F8K7.23 (T26F17.1) (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein) (Uncharacterized protein At1g21790) integral component of membrane [GO:0016021] locus:2201093; AT1G21790 TLC Os01g0869600 protein Q5N944 Q5N944_ORYSJ Os01g0869600 Os01g0869600 OsJ_04223 OSNPB_010869600 P0039A07.3 P0677H08.35 ENOG411DUWM MIK2 Q9LP24,Q8VZG8 Y1571_ARATH,MIK2_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 (EC 2.7.11.1),MDIS1-interacting receptor like kinase 2 (AtMIK2) (Probable LRR receptor-like serine/threonine-protein kinase At4g08850) (EC 2.7.11.1) FUNCTION: Involved in the pollen tube perception of the female signal. {ECO:0000269|PubMed:26863186}. 2.7.11.1 124104,115423 Probable leucine-rich repeat receptor-like protein kinase At1g35710 (EC 2.7.11.1),MDIS1-interacting receptor like kinase 2 (AtMIK2) (Probable LRR receptor-like serine/threonine-protein kinase At4g08850) (EC 2.7.11.1) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in pollen tubes. {ECO:0000269|PubMed:26863186}. locus:2011339;,locus:2138268; AT1G35710,AT4G08850 LRR receptor-like serine threonine-protein kinase Leucine Rich Repeat family protein, expressed (Os10g0468500 protein),Os10g0468500 protein (Fragment),Os02g0161450 protein Q337M0,A0A0P0XVT6,A0A0P0VF33 Q337M0_ORYSJ,A0A0P0XVT6_ORYSJ,A0A0P0VF33_ORYSJ LOC_Os10g33040 Os10g0468500 OSNPB_100468500,Os10g0468500 OSNPB_100468500,Os02g0161450 OSNPB_020161450 ENOG411DUWN EMB1796 Q9M3A8 PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240, mitochondrial (Protein EMBRYO DEFECTIVE 1796) Embryo fails to develop beyond the globular stage. Consisten and severe developmental arrest at the mid-globular stage resulting in a slightly irregular embryo proper consisting of 32-64 cells. Arrested embryos persist in this early arrested stage into late-stage seeds without any apparent further growth. Embryo defective; Globular-D. Meinke-2002 FUNCTION: May play a role in embryogenesis. {ECO:0000269|PubMed:15647901}. 71293 Pentatricopeptide repeat-containing protein At3g49240, mitochondrial (Protein EMBRYO DEFECTIVE 1796) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; endosperm development [GO:0009960]; regulation of gene expression by genetic imprinting [GO:0006349]; RNA modification [GO:0009451] locus:2082871; AT3G49240 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411EHGM Q9LPJ2 CX6BL_ARATH Putative cytochrome c oxidase subunit 6b-like FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase (By similarity). {ECO:0000250}. 15480 Putative cytochrome c oxidase subunit 6b-like mitochondrion [GO:0005739] locus:2035624; AT1G32710 Cytochrome c oxidase subunit NA NA NA NA NA NA NA ENOG411EHGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3681) NA NA NA NA NA NA NA ENOG411EHGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0114000 protein (Zinc finger, C3HC4 type family protein),Os12g0113800 protein Q2RBE8,A0A0P0Y659 Q2RBE8_ORYSJ,A0A0P0Y659_ORYSJ Os11g0114000 LOC_Os11g02260 OSNPB_110114000,Os12g0113800 OSNPB_120113800 ENOG411EHGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHGZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411EHGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EHGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor BZIP transcription factor family protein, expressed (Os12g0634500 protein),BZIP transcription factor family protein (Os03g0675400 protein) Q2QLP2,Q9FRG2 Q2QLP2_ORYSJ,Q9FRG2_ORYSJ LOC_Os12g43790 Os12g0634500 OSNPB_120634500,Os03g47200 Os03g0675400 LOC_Os03g47200 OSNPB_030675400 ENOG411EHGV Q9LNQ3 Q9LNQ3_ARATH F1L3.22 (Uncharacterized protein At1g17510) (Uncharacterized protein At1g17510/F11A6_2) 13123 F1L3.22 (Uncharacterized protein At1g17510) (Uncharacterized protein At1g17510/F11A6_2) locus:2007868; AT1G17510 NA NA NA NA NA NA NA NA ENOG411EHGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0812600 protein,Os01g0812500 protein (p0432B10.5 protein) C7IXR9,Q8RUN4 C7IXR9_ORYSJ,Q8RUN4_ORYSJ Os01g0812600 Os01g0812600 OSNPB_010812600,Os01g0812500 P0432B10.5 OsJ_03837 OSNPB_010812500 P0425G02.28 ENOG411EHGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0439800 protein,Os07g0217000 protein Q0DQW9,A0A0P0X3L8 Q0DQW9_ORYSJ,A0A0P0X3L8_ORYSJ Os03g0439800 OSNPB_030439800,Os07g0217000 OSNPB_070217000 ENOG411EHGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1675) NA NA NA NA NA NA NA ENOG411EHGP Q0WQ09 Q0WQ09_ARATH Uncharacterized protein 8433 Uncharacterized protein locus:4515103443; AT4G24026 NA NA NA NA NA NA NA NA ENOG411EHG7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411DZJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF617 Os06g0495800 protein Q0DC17 Q0DC17_ORYSJ Os06g0495800 Os06g0495800 OSNPB_060495800 ENOG411E7V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Membrane transport protein NA NA NA NA NA NA NA ENOG411E7VY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0390701 protein B9G5J8 B9G5J8_ORYSJ Os10g0390701 OsJ_31387 OSNPB_100390701 ENOG411E7VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411E7VQ NOXY2 Q9LYG7,Q6NNL9 Q9LYG7_ARATH,Q6NNL9_ARATH Uncharacterized protein T22P22_20,At5g11630 9629,9551 Uncharacterized protein T22P22_20,At5g11630 mitochondrion [GO:0005739]; cell wall repair [GO:0071433]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; root development [GO:0048364],defense response [GO:0006952] locus:2181925; AT5G11630 NA NA NA NA NA NA NA NA ENOG411DQ2M MKRN Q6IDS6,E0X9N4 C3H35_ARATH,C3H69_ARATH E3 ubiquitin-protein ligase makorin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase makorin) (Zinc finger CCCH domain-containing protein 35) (AtC3H35),Putative RING-type E3 ubiquitin transferase C3H69 (EC 2.3.2.27) (Zinc finger CCCH domain-containing protein 69) (AtC3H69) FUNCTION: E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 36562,39190 E3 ubiquitin-protein ligase makorin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase makorin) (Zinc finger CCCH domain-containing protein 35) (AtC3H35),Putative RING-type E3 ubiquitin transferase C3H69 (EC 2.3.2.27) (Zinc finger CCCH domain-containing protein 69) (AtC3H69) DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transferase activity [GO:0016740]; protein ubiquitination [GO:0016567],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transferase activity [GO:0016740] locus:2831040; AT3G08505,AT3G63550 E3 ubiquitin-protein ligase E3 ubiquitin-protein ligase makorin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase makorin) (Zinc finger CCCH domain-containing protein 41) (OsC3H41) Q5ZA07 C3H41_ORYSJ MKRN Os06g0318700 LOC_Os06g21390 OsJ_21146 P0468A12.33 P0592B08.7 FUNCTION: E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. ENOG411DQ2J Q6NKR8,A0A1I9LS40 Q6NKR8_ARATH,A0A1I9LS40_ARATH At3g14170,Uncharacterized protein 55600,55728 At3g14170,Uncharacterized protein locus:2087462; AT3G14170 Plant protein of unknown function (DUF936) Expressed protein (Os03g0181800 protein) (cDNA clone:J023049M11, full insert sequence),Os03g0181800 protein (Fragment) Q8H7K9,A0A0P0VTY2 Q8H7K9_ORYSJ,A0A0P0VTY2_ORYSJ LOC_Os03g08390 Os03g0181800 OsJ_09663 OSJNBb0076N15.15 OSNPB_030181800,Os03g0181800 OSNPB_030181800 ENOG411DQ2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Probable E3 ubiquitin-protein ligase XBOS36 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS36) (RING-type E3 ubiquitin transferase XBOS36) (XB3 protein homolog 6),Os06g0128600 protein,Os06g0128700 protein (Fragment) Q4JHE0,A0A0N7KLG5,A0A0P0WSG7 XB36_ORYSJ,A0A0N7KLG5_ORYSJ,A0A0P0WSG7_ORYSJ XBOS36 Os06g0128700 LOC_Os06g03800,Os06g0128600 OSNPB_060128600,Os06g0128700 OSNPB_060128700 ENOG411DQ28 PEX11C Q9LQ73 PX11C_ARATH Peroxisomal membrane protein 11C (Peroxin-11C) (AtPEX11c) FUNCTION: Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199, ECO:0000269|PubMed:18539750}. MISCELLANEOUS: Can complement the yeast pex11 null mutant. 25912 Peroxisomal membrane protein 11C (Peroxin-11C) (AtPEX11c) integral component of peroxisomal membrane [GO:0005779]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; identical protein binding [GO:0042802]; peroxisome fission [GO:0016559]; peroxisome organization [GO:0007031]; regulation of peroxisome size [GO:0044375] TISSUE SPECIFICITY: Expressed in roots and developing siliques. {ECO:0000269|PubMed:16636080, ECO:0000269|PubMed:17220199}. locus:2198150; AT1G01820 Peroxisomal membrane protein Peroxisomal membrane protein 11-1 (OsPEX11-1) (Peroxin-11-1),Peroxisomal membrane protein 11-5 (OsPEX11-2) (OsPEX11-5) (Peroxin-11-5) Q10SM7,Q5VRJ8 PX111_ORYSJ,PX115_ORYSJ PEX11-1 Os03g0117100 LOC_Os03g02590 OsJ_09180,PEX11-5 Os06g0127000 LOC_Os06g03660 OSJNBa0038F22.10-1 P0425F02.44-1 FUNCTION: Involved in peroxisomal proliferation. {ECO:0000250}. ENOG411E5A9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5A8 Q9LNV2,O82393,A0A1P8AZC3,F4KGE0,F4HQL7 Q9LNV2_ARATH,O82393_ARATH,A0A1P8AZC3_ARATH,F4KGE0_ARATH,F4HQL7_ARATH Dentin sialophosphoprotein (F22G5.33),Dentin sialophosphoprotein (Uncharacterized protein At2g29620),Dentin sialophosphoprotein,LRR protein 84948,85157,81483,122932,76944 Dentin sialophosphoprotein (F22G5.33),Dentin sialophosphoprotein (Uncharacterized protein At2g29620),Dentin sialophosphoprotein,LRR protein integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasmodesma [GO:0009506] locus:2060615;,locus:2154578;,locus:2025112; AT2G29620,AT5G58880,AT1G07330 NA NA NA NA NA NA NA NA ENOG411E5A1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411E5A0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early nodulin-like protein Os01g0788700 protein (Phytocyanin protein-like),Os02g0162200 protein Q8RVD1,A0A0P0VFA0 Q8RVD1_ORYSJ,A0A0P0VFA0_ORYSJ Os01g0788700 Os01g0788700 OsJ_03722 OSNPB_010788700 P0415A04.45 P0557A01.3,Os02g0162200 OSNPB_020162200 ENOG411E5A3 Q8VY59 Q8VY59_ARATH At3g27200 (Blue copper protein, putative) (Cupredoxin superfamily protein) 18023 At3g27200 (Blue copper protein, putative) (Cupredoxin superfamily protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2086518; AT3G27200 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E5A2 rpl23-A; rpl23-B P61845 RK23_ARATH 50S ribosomal protein L23, chloroplastic FUNCTION: Binds to 23S rRNA. {ECO:0000250}. 10789 50S ribosomal protein L23, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:504954482;locus:504954707; ATCG00840ATCG01300; ribosomal protein L23 50S ribosomal protein L23, chloroplastic P0C451 RK23_ORYSJ rpl23-A Nip215a; rpl23-B Nip215b FUNCTION: Binds to 23S rRNA. {ECO:0000250}. ENOG411E5A5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os10g0510100 protein,Expressed protein (Os10g0510200 protein) Q94GX4,Q94GX3 Q94GX4_ORYSJ,Q94GX3_ORYSJ Os10g0510100 LOC_Os10g36660 OSJNBa0005K07.12 OSNPB_100510100,Os10g0510200 LOC_Os10g36670 OSJNBa0005K07.13 OSNPB_100510200 ENOG411E5A4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NA NA NA NA NA NA NA ENOG411E5A7 Q9SJ60,A0A1P8AXE6 Q9SJ60_ARATH,A0A1P8AXE6_ARATH Mal d 1-associated protein (Uncharacterized protein At2g35900),Mal d 1-associated protein 21238,16346 Mal d 1-associated protein (Uncharacterized protein At2g35900),Mal d 1-associated protein nucleus [GO:0005634] locus:2039180; AT2G35900 mal d 1-associated protein Os01g0771200 protein (Putative Mal d 1-associated protein) (cDNA clone:001-208-C02, full insert sequence) Q5ZD06 Q5ZD06_ORYSJ Os01g0771200 OsJ_03613 OSNPB_010771200 P0665A11.29 ENOG411E5A6 Q9T076 ENL2_ARATH Early nodulin-like protein 2 (Phytocyanin-like protein) Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. 35064 Early nodulin-like protein 2 (Phytocyanin-like protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; chloroplast [GO:0009507]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; electron carrier activity [GO:0009055] locus:2137672; AT4G27520 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E5AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome NA NA NA NA NA NA NA ENOG411E5AH MHF1 Q9FI55 MHF1_ARATH Protein MHF1 homolog (AtMHF1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit a defect in somatic homologous recombination. {ECO:0000269|PubMed:24635147}. FUNCTION: Involved in the promotion of spontaneous somatic homologous recombination (HR) events, which is opposite to the function of FANCM in ordered HR. Only FANCM is essential for replicative repair in the absence of the endonuclease MUS81 (PubMed:24635147). Acts in the same pathway as FANCM to restrain class II meiotic crossing over (CO), and acts with FANCM during meiosis to repair interstrand cross-links (ICLs) (PubMed:24635147, PubMed:25038251). This common pathway between MHF1 and FANCM is in parallel to the pathway that involves the RECQ4A helicase (PubMed:24635147). {ECO:0000269|PubMed:24635147, ECO:0000269|PubMed:25038251}. 27292 Protein MHF1 homolog (AtMHF1) FANCM-MHF complex [GO:0071821]; Fanconi anaemia nuclear complex [GO:0043240]; chromatin binding [GO:0003682]; double-stranded DNA binding [GO:0003690]; protein heterodimerization activity [GO:0046982]; interstrand cross-link repair [GO:0036297]; mitotic recombination [GO:0006312]; reciprocal meiotic recombination [GO:0007131]; replication fork processing [GO:0031297]; resolution of meiotic recombination intermediates [GO:0000712]; synapsis [GO:0007129] locus:2157393; AT5G50930 NA Os04g0397700 protein A0A0P0WA36 A0A0P0WA36_ORYSJ Os04g0397700 OSNPB_040397700 ENOG411E5AK PDCB3 Q9FZ86,A0A1P8AQH8 PDCB3_ARATH,A0A1P8AQH8_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (AtPDCB3),Plasmodesmata callose-binding protein 3 19336,14050 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (AtPDCB3),Plasmodesmata callose-binding protein 3 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasmodesma [GO:0009506]; (1->3)-beta-D-glucan binding [GO:0001872]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] TISSUE SPECIFICITY: Expressed in the shoot apical region and in young leaves but also detected in the laminar and vasculature of mature leaves. {ECO:0000269|PubMed:19223515}. locus:2027428; AT1G18650 glucan endo-13-beta-glucosidase-like protein Expressed protein (Os03g0756300 protein) (cDNA clone:J033148G11, full insert sequence) Q75J20 Q75J20_ORYSJ OSJNBb0081K01.7 LOC_Os03g54910 Os03g0756300 OsJ_12641 OSNPB_030756300 ENOG411E5AJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain NA NA NA NA NA NA NA ENOG411E5AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os09g0242800 protein (cDNA clone:006-212-C03, full insert sequence) Q6K2C6 Q6K2C6_ORYSJ Os09g0242800 OSJNBa0011D16.11 OSJNBa0038I09.23 OSNPB_090242800 ENOG411E5AN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease CAF1 family ribonuclease containing protein (Os10g0124200 protein) (Putative CCR4-associated factor 1) Q7G606 Q7G606_ORYSJ Os10g0124200 LOC_Os10g03560 OsJ_30580 OSJNAa0049K09.19 OSJNBa0056A20.7 OSNPB_100124200 ENOG411E5AA Q8L9M8 Q8L9M8_ARATH Uncharacterized protein At1g33810 (Uncharacterized protein At1g33810/F14M2_5) (Zinc finger/BTB domain protein) 15698 Uncharacterized protein At1g33810 (Uncharacterized protein At1g33810/F14M2_5) (Zinc finger/BTB domain protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536] locus:2012688; AT1G33810 NA Os08g0112600 protein Q6ZCC6 Q6ZCC6_ORYSJ Os08g0112600 OsJ_25798 OSNPB_080112600 P0498H04.23 ENOG411E5AC Q9C7S3 Q9C7S3_ARATH Inner membrane localized protein (Uncharacterized protein At1g42960) (Uncharacterized protein F13A11.2) 17829 Inner membrane localized protein (Uncharacterized protein At1g42960) (Uncharacterized protein F13A11.2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2009859; AT1G42960 NA NA NA NA NA NA NA NA ENOG411E5AB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBA NA NA NA NA NA NA NA ENOG411E5AE Q9M0X1,Q9M0X2,Q9M0X0 Q9M0X1_ARATH,Q9M0X2_ARATH,Q9M0X0_ARATH Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05240),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05230),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05250) 23004,23720,36006 Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05240),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05230),Ubiquitin-like superfamily protein (Uncharacterized protein AT4g05250) locus:2115668;,locus:2115653;,locus:2115678; AT4G05240,AT4G05230,AT4G05250 UBQ NA NA NA NA NA NA NA ENOG411E5AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: peroxisomal membrane protein Os03g0570616 protein,Os11g0149650 protein A0A0P0VZG6,A0A0P0XYW7 A0A0P0VZG6_ORYSJ,A0A0P0XYW7_ORYSJ Os03g0570616 OSNPB_030570616,Os11g0149650 OSNPB_110149650 ENOG411E5AG Q9FN12 Q9FN12_ARATH Transcriptional regulator of RNA polII, SAGA, subunit 32132 Transcriptional regulator of RNA polII, SAGA, subunit SAGA complex [GO:0000124]; transcription coactivator activity [GO:0003713]; histone H3 acetylation [GO:0043966]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2158237; AT5G67410 NA NA NA NA NA NA NA NA ENOG411E5AF Q8GYB5 Q8GYB5_ARATH Ubiquitin-like superfamily protein (Uncharacterized protein At4g32270/F10M6_90) 27268 Ubiquitin-like superfamily protein (Uncharacterized protein At4g32270/F10M6_90) plasma membrane [GO:0005886] locus:2116495; AT4G32270 NA NA NA NA NA NA NA NA ENOG411E5AY Q9MAV1,O65377 Q9MAV1_ARATH,O65377_ARATH F2401.15 (Uncharacterized protein At1g62415),F12F1.11 (Uncharacterized protein At1g12020) 20883,25052 F2401.15 (Uncharacterized protein At1g62415),F12F1.11 (Uncharacterized protein At1g12020) locus:4010713579;,locus:2008885; AT1G62422,AT1G12020 NA NA NA NA NA NA NA NA ENOG411E5AX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: extra spindle pole bodies homolog 1 (S. cerevisiae) NA NA NA NA NA NA NA ENOG411E5AZ O64788,O64787 FBD33_ARATH,FBD4_ARATH FBD-associated F-box protein At1g61320,Putative FBD-associated F-box protein At1g61330 53537,51878 FBD-associated F-box protein At1g61320,Putative FBD-associated F-box protein At1g61330 locus:2197689;,locus:2197674; AT1G61320,AT1G61330 F-box protein NA NA NA NA NA NA NA ENOG411E5AQ F9I5.13 Q9M810,Q9LW74 Q9M810_ARATH,Q9LW74_ARATH At1g52250 (Dynein light chain LC6, flagellar outer arm-like protein) (Dynein light chain, putative) (Uncharacterized protein F19K6.18),At3g16120 (Dynein light chain type 1 family protein) (Putative dynein light chain protein) Long roots in the dark-T. Hahn-2010 10582,10495 At1g52250 (Dynein light chain LC6, flagellar outer arm-like protein) (Dynein light chain, putative) (Uncharacterized protein F19K6.18),At3g16120 (Dynein light chain type 1 family protein) (Putative dynein light chain protein) dynein complex [GO:0030286]; microtubule-based process [GO:0007017],cytoplasmic dynein complex [GO:0005868]; cytoskeletal protein binding [GO:0008092]; dynein intermediate chain binding [GO:0045505]; dynein light intermediate chain binding [GO:0051959]; cilium assembly [GO:0060271]; positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [GO:2000582]; transport along microtubule [GO:0010970] locus:2093457; AT1G52240,AT3G16120 dynein light chain Dynein light chain Q6ERT5,A0A0P0V8F4 Q6ERT5_ORYSJ,A0A0P0V8F4_ORYSJ Os02g0269200 OsJ_06195 OSNPB_020269200 P0693E08.27,Os01g0760000 OSNPB_010760000 ENOG411E5AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor NA NA NA NA NA NA NA ENOG411E5AS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0730200 protein) Q851E9 Q851E9_ORYSJ Os03g0730200 LOC_Os03g52020 OsJ_12447 OSJNBb0011H13.13 OSNPB_030730200 ENOG411E5AR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5AU Q3EAQ0,F4J369 Q3EAQ0_ARATH,F4J369_ARATH Uncharacterized protein 16212,14839 Uncharacterized protein locus:504955616; AT3G44716 NA NA NA NA NA NA NA NA ENOG411E5AT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CASP-like protein CASP-like protein 2C1 (OsCASPL2C1) Q67W83 CSPLD_ORYSJ Os06g0656300 LOC_Os06g44610 P0460H04.29 P0709F06.50 ENOG411E5AW DIR1,DIR2 Q9FIG6,Q9FIG7 DIR1_ARATH,DIR2_ARATH Dirigent protein 1 (AtDIR1),Dirigent protein 2 (AtDIR2) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 20131,20438 Dirigent protein 1 (AtDIR1),Dirigent protein 2 (AtDIR2) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2162366;,locus:2162361; AT5G42510,AT5G42500 Dirigent-like protein Dirigent protein Q53NQ2,Q53NP9 Q53NQ2_ORYSJ,Q53NP9_ORYSJ Os11g0179500 LOC_Os11g07740 OsJ_33177 OSNPB_110179500,Os11g0179700 LOC_Os11g07770 OsJ_33178 OSNPB_110179700 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E5AV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0249200 protein A0A0P0XDK8 A0A0P0XDK8_ORYSJ Os08g0249200 OSNPB_080249200 ENOG411E6N2 Q6AWV8 Q6AWV8_ARATH At3g22510 (Pre-rRNA-processing protein TSR2, conserved region) 13904 At3g22510 (Pre-rRNA-processing protein TSR2, conserved region) nucleus [GO:0005634]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2077006; AT3G22510 pre-rRNA-processing protein TSR2 NA NA NA NA NA NA NA ENOG411E6NR Q9SUF6 Q9SUF6_ARATH At4g08240 (Histone-lysine N-methyltransferase) (Uncharacterized protein AT4g08240) (Uncharacterized protein At4g08240/T12G13_80) 14557 At4g08240 (Histone-lysine N-methyltransferase) (Uncharacterized protein AT4g08240) (Uncharacterized protein At4g08240/T12G13_80) methyltransferase activity [GO:0008168] locus:2132477; AT4G08240 NA Os02g0567000 protein (cDNA clone:J013142A16, full insert sequence) Q6YTI4 Q6YTI4_ORYSJ Os02g0567000 Os02g0567000 OsJ_07191 OSNPB_020567000 P0020D05.17 ENOG411E6NX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os03g0272900 protein) (cDNA clone:001-112-B04, full insert sequence) (cDNA clone:J013079P07, full insert sequence) Q10ND8 Q10ND8_ORYSJ Os03g0272900 LOC_Os03g16600 Os03g0272900 OsJ_10312 OSNPB_030272900 ENOG411E6NA Q9C7G5 Q9C7G5_ARATH TonB-dependent heme receptor A (Uncharacterized protein At1g72020) (Uncharacterized protein F28P5.9) 10568 TonB-dependent heme receptor A (Uncharacterized protein At1g72020) (Uncharacterized protein F28P5.9) integral component of membrane [GO:0016021] locus:2030311; AT1G72020 NA Os04g0432600 protein (cDNA clone:001-009-C02, full insert sequence) (cDNA clone:001-016-A03, full insert sequence) (cDNA clone:J033081P13, full insert sequence) Q0JD41 Q0JD41_ORYSJ Os04g0432600 Os04g0432600 OsJ_14862 OSNPB_040432600 ENOG411DSJY Q5XEV4 Q5XEV4_ARATH At1g65030 (Transducin/WD40 repeat-like superfamily protein) 37455 At1g65030 (Transducin/WD40 repeat-like superfamily protein) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730] locus:2014988; AT1G65030 p21-activated protein kinase-interacting protein 1-like Os12g0615900 protein (Fragment) Q0ILW8 Q0ILW8_ORYSJ Os12g0615900 Os12g0615900 OSNPB_120615900 ENOG411E6NN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oleosin Oleosin Q6K2D2 Q6K2D2_ORYSJ Os09g0324000 OsJ_28867 OSJNBb0024J13.29 OSNPB_090324000 P0692F07.2 ENOG411E6NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA GATA zinc finger family protein (GATA zinc finger, putative) (Os11g0187200 protein) Q53P56 Q53P56_ORYSJ Os11g0187200 LOC_Os11g08410 OSNPB_110187200 ENOG411EBHY ATL75,ATL76,ATL10 Q94BY6,Q6NML0,P0C034 ATL75_ARATH,ATL76_ARATH,ATL10_ARATH RING-H2 finger protein ATL75 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL75),E3 ubiquitin-protein ligase ATL76 (EC 2.3.2.27) (RING-H2 finger protein ATL76) (RING-type E3 ubiquitin transferase ATL76),RING-H2 finger protein ATL10 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL10) FUNCTION: E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. {ECO:0000269|PubMed:15644464}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 24790,25184,27809 RING-H2 finger protein ATL75 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL75),E3 ubiquitin-protein ligase ATL76 (EC 2.3.2.27) (RING-H2 finger protein ATL76) (RING-type E3 ubiquitin transferase ATL76),RING-H2 finger protein ATL10 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL10) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567] locus:2028411;,locus:2028406;,locus:2028506; AT1G49200,AT1G49210,AT1G49220 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EBHX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH:flavin oxidoreductase / NADH oxidase family NA NA NA NA NA NA NA ENOG411EBHZ MPO12.30 Q9FNE5 Q9FNE5_ARATH CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein) 68518 CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein) intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556] locus:2170543; AT5G40320 C1 domain NA NA NA NA NA NA NA ENOG411EBHU PIAL1 A0A0A7EPL0 PIAL1_ARATH E4 SUMO-protein ligase PIAL1 (EC 2.3.2.-) (Protein EMBRYO DEFECTIVE 3001) (Protein INHIBITOR OF ACTIVATED STAT-LIKE 1) DISRUPTION PHENOTYPE: No obvious growth difference under standard greenhouse conditions. Altered sulfur metabolism. Reduced growth in high osmotic pressure (mannitol) and in response to abscisic acid (ABA), but enhanced growth and fitness in high salt (NaCl) condition. Abnormal steady state levels of SUMO conjugates in various conditions. {ECO:0000269|PubMed:25415977}. FUNCTION: E4-type SUMO ligase that promotes SUMO chain formation in a SCE1-dependent manner and thus contributes to a pathway for proteolytic removal of sumoylation substrates. Involved in stress responses (e.g. osmotic, salt and abscisic acid ABA) and sulfur metabolism. {ECO:0000269|PubMed:25415977}. PATHWAY: Protein modification; protein sumoylation. {ECO:0000269|PubMed:25415977}. 2.3.2.- 93475 E4 SUMO-protein ligase PIAL1 (EC 2.3.2.-) (Protein EMBRYO DEFECTIVE 3001) (Protein INHIBITOR OF ACTIVATED STAT-LIKE 1) nucleus [GO:0005634]; ligase activity [GO:0016874]; SUMO transferase activity [GO:0019789]; zinc ion binding [GO:0008270]; positive regulation of sulfur metabolic process [GO:0051176]; protein sumoylation [GO:0016925]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, and, at low levels, in siliques and old leaves. {ECO:0000269|PubMed:25415977}. locus:2035999; AT1G08910 Zinc ion binding NA NA NA NA NA NA NA ENOG411EBHT F5O8.12 Q9ZUD8 Q9ZUD8_ARATH F5O8.12 protein (OBP32pep, putative (DUF220)) 38601 F5O8.12 protein (OBP32pep, putative (DUF220)) locus:2034808; AT1G23560 Domain of unknown function DUF220 NA NA NA NA NA NA NA ENOG411EBHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411EBHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amylo-alpha-16-glucosidase NA NA NA NA NA NA NA ENOG411EBHQ CHX13,CHX14 O22920,Q9LMJ1 CHX13_ARATH,CHX14_ARATH Cation/H(+) symporter 13 (Protein CATION/H+ EXCHANGER 13) (AtCHX13),Cation/H(+) antiporter 14 (Protein CATION/H+ EXCHANGER 14) (AtCHX14) DISRUPTION PHENOTYPE: No visible phenotype under standard growth conditions, but growth inhibition and leaf chlorosis and bleaching under low K(+) conditions. {ECO:0000269|PubMed:18676662}. Reduced rate of growth and increased leaf chlorosis. Pale leaves with reduced levels of chlorophyll. Slow growth and chlorotic, bleached leaves under low potassium-K. Hirschi-2008 FUNCTION: High-affinity potassium transporter that plays a role in K(+) acquisition. May operate as a K(+)/H(+) symporter.,FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. MISCELLANEOUS: K(+) uptake enhanced by a proton electrochemical gradient (acidic outside). Not affected by specific inhibitors of voltage-gated K(+) channels. 92189,92160 Cation/H(+) symporter 13 (Protein CATION/H+ EXCHANGER 13) (AtCHX13),Cation/H(+) antiporter 14 (Protein CATION/H+ EXCHANGER 14) (AtCHX14) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079]; solute:proton antiporter activity [GO:0015299]; symporter activity [GO:0015293]; regulation of pH [GO:0006885],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Preferentially expressed in pollen before and after germination. Detected in pollen grains within anthers of the flower buds or in pollen on fully open flowers and on the stigma, and in pollen tubes growing in the style. Weakly expressed in roots. {ECO:0000269|PubMed:15347787}.,TISSUE SPECIFICITY: Preferentially expressed in pollen but also detected in vegetative tissues like leaf trichomes and root vascular tissues. {ECO:0000269|PubMed:15347787}. locus:2060827;,locus:2007392; AT2G30240,AT1G06970 Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411EBHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Single-strand binding protein family Os04g0363700 protein (Fragment) Q0JDX1 Q0JDX1_ORYSJ Os04g0363700 Os04g0363700 OSNPB_040363700 ENOG411EBHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411DSJZ Q8H1R1,F4JIT1 Q8H1R1_ARATH,F4JIT1_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At4g27250),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT4G27250-MONOMER; 40057,39025 NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At4g27250),NAD(P)-binding Rossmann-fold superfamily protein catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2131734; AT4G27250 3-beta hydroxysteroid dehydrogenase/isomerase family Os06g0683100 protein (Putative dihydroflavonol-4-reductase DFR1) (cDNA clone:J013126J18, full insert sequence) Q653W0 Q653W0_ORYSJ Os06g0683100 OSNPB_060683100 P0009H10.5 P0547F09.38 ENOG411EBHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os12g0593300 protein A0A0N7KUA8 A0A0N7KUA8_ORYSJ Os12g0593300 OSNPB_120593300 ENOG411EBHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os11g0213300 protein,Os11g0567600 protein (Fragment),Os12g0155400 protein (Fragment),Os10g0120300 protein (Fragment),Os11g0560900 protein (Fragment) B9G9Z1,A0A0P0Y3Q3,A0A0P0Y747,A0A0P0XR54,A0A0P0Y3W1 B9G9Z1_ORYSJ,A0A0P0Y3Q3_ORYSJ,A0A0P0Y747_ORYSJ,A0A0P0XR54_ORYSJ,A0A0P0Y3W1_ORYSJ Os11g0213300 OsJ_33351 OSNPB_110213300,Os11g0567600 OSNPB_110567600,Os12g0155400 OSNPB_120155400,Os10g0120300 OSNPB_100120300,Os11g0560900 OSNPB_110560900 ENOG411EBHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBHK Q9LJ42,Q9SVQ6,F4JSA1 PLY10_ARATH,PLY14_ARATH,F4JSA1_ARATH Probable pectate lyase 10 (EC 4.2.2.2),Putative pectate lyase 14 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. ARA:AT4G13210-MONOMER; 4.2.2.2 48761,48548,44558 Probable pectate lyase 10 (EC 4.2.2.2),Putative pectate lyase 14 (EC 4.2.2.2),Pectate lyase (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2093131;,locus:2119290; AT3G24670,AT4G13210 Pectate lyase NA NA NA NA NA NA NA ENOG411EBHJ Q9FH19 Q9FH19_ARATH C2H2 type zinc finger transcription factor family (Uncharacterized protein At5g56200) 54528 C2H2 type zinc finger transcription factor family (Uncharacterized protein At5g56200) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2156435; AT5G56200 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EBHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C NA NA NA NA NA NA NA ENOG411EBHD ALMT5,ALMT4,ALMT6 Q93Z29,Q9C6L8,Q9SHM1,A0A1P8B2G1 ALMT5_ARATH,ALMT4_ARATH,ALMT6_ARATH,A0A1P8B2G1_ARATH Aluminum-activated malate transporter 5 (AtALMT5),Aluminum-activated malate transporter 4 (AtALMT4),Aluminum-activated malate transporter 6 (AtALMT6),Aluminum activated malate transporter family protein FUNCTION: Malate transporter. {ECO:0000250}. 60222,61720,60696,63204 Aluminum-activated malate transporter 5 (AtALMT5),Aluminum-activated malate transporter 4 (AtALMT4),Aluminum-activated malate transporter 6 (AtALMT6),Aluminum activated malate transporter family protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; malate transmembrane transporter activity [GO:0015140],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; malate transmembrane transporter activity [GO:0015140],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; malate transmembrane transporter activity [GO:0015140]; malate transmembrane transport [GO:0071423],integral component of membrane [GO:0016021]; malate transport [GO:0015743] locus:2026935;,locus:2031160;,locus:2053878; AT1G68600,AT1G25480,AT2G17470 Fusaric acid resistance protein family NA NA NA NA NA NA NA ENOG411EBHG PLDALPHA3 P58766,A0A1P8BEI1 PLDA3_ARATH,A0A1P8BEI1_ARATH Phospholipase D alpha 3 (AtPLDalpha3) (PLD alpha 3) (EC 3.1.4.4),Phospholipase D (EC 3.1.4.4) DISRUPTION PHENOTYPE: No visible phenotypes when grown under normal conditions, but increased sensitivity to salinity and water deficiency (PubMed:18364466). Late flowering in slightly dry conditions (PubMed:18364466). Decreased sensitivity to glucose (PubMed:19704505). {ECO:0000269|PubMed:18364466, ECO:0000269|PubMed:19704505}. Late flowering; Sensitive to drought and salt-X. Wang-2008 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA) (PubMed:18364466). Active with phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS) as substrates (PubMed:18364466). No activity toward phosphatidylinositol (PI) or PIP2 (PubMed:18364466). Positively mediates plant responses to hyperosmotic stresses and promotes root growth, flowering, and stress avoidance (PubMed:18364466, PubMed:19704505). Not involved in the abscisic acid regulation of stomatal movement and transpirational water loss (PubMed:18364466). {ECO:0000269|PubMed:18364466, ECO:0000269|PubMed:19704505}.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ARA:AT5G25370-MONOMER; 3.1.4.4 93362,84805 Phospholipase D alpha 3 (AtPLDalpha3) (PLD alpha 3) (EC 3.1.4.4),Phospholipase D (EC 3.1.4.4) cytoplasm [GO:0005737]; membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; membrane lipid catabolic process [GO:0046466]; phosphatidylcholine metabolic process [GO:0046470]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],membrane [GO:0016020]; calcium ion binding [GO:0005509]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; phosphatidylcholine metabolic process [GO:0046470] TISSUE SPECIFICITY: Expressed in buds, flowers, siliques, stems, old leaves and roots (PubMed:18364466). Expressed in the sieve elements (PubMed:25081480). {ECO:0000269|PubMed:18364466, ECO:0000269|PubMed:25081480}. locus:2145452; AT5G25370 Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond NA NA NA NA NA NA NA ENOG411EBHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Structure-specific recognition protein (SSRP1) NA NA NA NA NA NA NA ENOG411EBHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EBHC MJE7.6 Q9LV70 Q9LV70_ARATH At5g48430 (Dermal glycoprotein) (Dermal glycoprotein, extracellular-like) (Eukaryotic aspartyl protease family protein) 44445 At5g48430 (Dermal glycoprotein) (Dermal glycoprotein, extracellular-like) (Eukaryotic aspartyl protease family protein) aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2166061; AT5G48430 Inherit from KOG: aspartic NA NA NA NA NA NA NA ENOG411EBHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) MADS-box protein-like (Os06g0333700 protein) Q69WG7 Q69WG7_ORYSJ Os06g0333700 OsJ_21209 OSJNBa0012F14.2 OSNPB_060333700 P0531C01.41 ENOG411EBH9 F16M2_110,ATMRK1 O22100,F4J0Y1 O22100_ARATH,F4J0Y1_ARATH ATMRK1 (Protein kinase superfamily protein) (Putative ATMRK1 protein),Protein kinase superfamily protein 42583,37331 ATMRK1 (Protein kinase superfamily protein) (Putative ATMRK1 protein),Protein kinase superfamily protein intracellular [GO:0005622]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2077244; AT3G63260 STYKc NA NA NA NA NA NA NA ENOG411EBH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHIPEP family NA NA NA NA NA NA NA ENOG411EBH4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copine NA NA NA NA NA NA NA ENOG411EBH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EBH6 SFP2,SFP1 Q94CI6,Q94CI7,A0A1P8BB24,A0A1P8BB22,A0A1P8BB18 EDL18_ARATH,EDL17_ARATH,A0A1P8BB24_ARATH,A0A1P8BB22_ARATH,A0A1P8BB18_ARATH Sugar transporter ERD6-like 18 (Sugar-porter family protein 2),Sugar transporter ERD6-like 17 (Sugar-porter family protein 1),Major facilitator superfamily protein FUNCTION: Sugar transporter. {ECO:0000305}. R-ATH-189200;R-ATH-8856825; 52461,51786,41268,47995,57842 Sugar transporter ERD6-like 18 (Sugar-porter family protein 2),Sugar transporter ERD6-like 17 (Sugar-porter family protein 1),Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] DEVELOPMENTAL STAGE: Expression increases during senescence with the highest levels in fully senescent leaves. {ECO:0000269|PubMed:11485201}. TISSUE SPECIFICITY: Expressed in leaf vasculature, stem and flowers. {ECO:0000269|PubMed:11485201}.,TISSUE SPECIFICITY: Expressed in young seedlings. {ECO:0000269|PubMed:11485201}. locus:2146365;,locus:2146350; AT5G27360,AT5G27350 Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EBH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mycolic acid cyclopropane synthetase NA NA NA NA NA NA NA ENOG411EBH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411EBH2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSJV ARP8 Q9FKT0,A0A1P8BAX0 ARP8_ARATH,A0A1P8BAX0_ARATH Actin-related protein 8 (F-box protein ARP8),Actin-related protein 8 52510,38020 Actin-related protein 8 (F-box protein ARP8),Actin-related protein 8 cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; structural constituent of cytoskeleton [GO:0005200]; actin filament-based process [GO:0030029] TISSUE SPECIFICITY: Ubiquitously expressed in all organs and cell types. Higher expression in seedlings. {ECO:0000269|PubMed:11891255, ECO:0000269|PubMed:18385164}. locus:2161795; AT5G56180 Actin-related protein Actin-related protein 8 (F-box protein ARP8),Os04g0667700 protein Q7XR80,A0A0P0WG75 ARP8_ORYSJ,A0A0P0WG75_ORYSJ ARP8 Os04g0667700 LOC_Os04g57210 B0811B10.7 H1005F08.28 OsJ_015820 OSJNBa0043A12.5,Os04g0667700 OSNPB_040667700 ENOG411E87N LTP3,LTP4,MNC17.24 Q9LLR7,Q9LLR6,Q1PDH3 NLTP3_ARATH,NLTP4_ARATH,Q1PDH3_ARATH Non-specific lipid-transfer protein 3 (LTP 3),Non-specific lipid-transfer protein 4 (LTP 4),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 11694,11405,9282 Non-specific lipid-transfer protein 3 (LTP 3),Non-specific lipid-transfer protein 4 (LTP 4),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein apoplast [GO:0048046]; cell wall [GO:0005618]; membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414],membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2168474;,locus:2168459;,locus:2168489; AT5G59320,AT5G59310,AT5G59330 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E87M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) NA NA NA NA NA NA NA ENOG411E87J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0141500 protein) (cDNA clone:006-203-B06, full insert sequence),Expressed protein (Os12g0141500 protein),Expressed protein (Os12g0141500 protein) (cDNA clone:001-017-B04, full insert sequence),Os07g0666400 protein Q2QXW0,Q2QXV9,Q2QXV8,A0A0N7KP09 Q2QXW0_ORYSJ,Q2QXV9_ORYSJ,Q2QXV8_ORYSJ,A0A0N7KP09_ORYSJ LOC_Os12g04740 Os12g0141500 OSNPB_120141500,Os12g0141500 LOC_Os12g04740 OSNPB_120141500,Os12g0141500 LOC_Os12g04740 OsJ_35188 OSNPB_120141500,Os07g0666400 OSNPB_070666400 ENOG411E87K ATL5,ATL64 Q9LZJ6,O22255 ATL5_ARATH,ATL64_ARATH RING-H2 finger protein ATL5 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL5),RING-H2 finger protein ATL64 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL64) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 28592,25474 RING-H2 finger protein ATL5 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL5),RING-H2 finger protein ATL64 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL64) early endosome [GO:0005769]; Golgi-associated vesicle [GO:0005798]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; cellular response to osmotic stress [GO:0071470]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein complex assembly [GO:0006461]; regulation of endocytosis [GO:0030100]; regulation of response to salt stress [GO:1901000],early endosome [GO:0005769]; Golgi-associated vesicle [GO:0005798]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; cellular response to osmotic stress [GO:0071470]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of endocytosis [GO:0030100]; regulation of response to salt stress [GO:1901000] locus:2081740;,locus:2062008; AT3G62690,AT2G47560 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E87H T22F8.200 Q9T036,Q9T037 Q9T036_ARATH,Q9T037_ARATH At4g39300 (Envelope glycoprotein) (Uncharacterized protein AT4g39300) (Uncharacterized protein At4g39300/T22F8_200) (Uncharacterized protein T22F8.200),Envelope glycoprotein (Uncharacterized protein AT4g39310) (Uncharacterized protein T22F8.210) 10056,10155 At4g39300 (Envelope glycoprotein) (Uncharacterized protein AT4g39300) (Uncharacterized protein At4g39300/T22F8_200) (Uncharacterized protein T22F8.200),Envelope glycoprotein (Uncharacterized protein AT4g39310) (Uncharacterized protein T22F8.210) viral envelope [GO:0019031] locus:2136363; AT4G39300 NA NA NA NA NA NA NA NA ENOG411E87I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E87F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3511) Os07g0690200 protein (cDNA clone:002-141-C01, full insert sequence) Q8H3Z5 Q8H3Z5_ORYSJ P0597G07.118 Os07g0690200 OsJ_25664 OSNPB_070690200 ENOG411E87G Q9SVS3 Q9SVS3_ARATH At4g21740 (Transmembrane protein) (Uncharacterized protein AT4g21740) (Uncharacterized protein F17L22.200) 17202 At4g21740 (Transmembrane protein) (Uncharacterized protein AT4g21740) (Uncharacterized protein F17L22.200) integral component of membrane [GO:0016021] locus:2119043; AT4G21740 NA NA NA NA NA NA NA NA ENOG411E87D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0490000 protein (Os12g0490050 protein),Os11g0600600 protein B9GD78,A0A0P0Y4D9 B9GD78_ORYSJ,A0A0P0Y4D9_ORYSJ Os12g0490050 Os12g0490000 OsJ_36136 OSNPB_120490050,Os11g0600600 OSNPB_110600600 ENOG411E87B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: bile acid NA NA NA NA NA NA NA ENOG411E87C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hypothetical protein (OSJNBa0036E02.22 protein) (Os01g0281301 protein) Q9LG63 Q9LG63_ORYSJ OSJNBa0036E02.22 Os01g0281301 B1085F09.22 OSNPB_010281301 ENOG411E87A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0043L24.21 protein (Os04g0508700 protein) Q7XM96 Q7XM96_ORYSJ OSJNBa0043L24.21 Os04g0508700 OSNPB_040508700 ENOG411E87Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60S acidic ribosomal protein Os07g0251301 protein (Putative 60s acidic ribosomal protein P2),Os08g0250300 protein,Os07g0470300 protein Q8H3F5,A3BR69,A3BJK9 Q8H3F5_ORYSJ,A3BR69_ORYSJ,A3BJK9_ORYSJ Os07g0251301 OSJNBb0056I06.121 OSNPB_070251301,Os08g0250300 OsJ_26618 OSNPB_080250300,Os07g0470300 OsJ_24186 OSNPB_070470300 ENOG411E87X LTP6 Q9LDB4,F4IXC6 NLTP6_ARATH,F4IXC6_ARATH Non-specific lipid-transfer protein 6 (LTP 6) (Xylogen-like protein 15) (AtXYP15),Non-specific lipid-transfer protein FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}.,FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. {ECO:0000256|RuleBase:RU000628}. 11878,12325 Non-specific lipid-transfer protein 6 (LTP 6) (Xylogen-like protein 15) (AtXYP15),Non-specific lipid-transfer protein membrane [GO:0016020]; lipid binding [GO:0008289]; lipid transport [GO:0006869],lipid binding [GO:0008289]; lipid transport [GO:0006869]; response to water deprivation [GO:0009414] locus:2077783; AT3G08770 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) NA NA NA NA NA NA NA ENOG411E87Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein S15 30S ribosomal protein S15, chloroplastic P0C470 RR15_ORYSJ rps15-A LOC_Osp1g00870 Nip162; rps15-B Nip178 ENOG411E87V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0665900 protein Q5SN49 Q5SN49_ORYSJ Os01g0665900 Os01g0665900 OsJ_02929 OSNPB_010665900 P0003E08.32 ENOG411E87W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E87U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411E87R MFB16.16 Q9LUE5 Q9LUE5_ARATH At5g50760 (Emb|CAB86483.1) (SAUR-like auxin-responsive protein family) 20650 At5g50760 (Emb|CAB86483.1) (SAUR-like auxin-responsive protein family) response to auxin [GO:0009733] locus:2163310; AT5G50760 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E87S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oligopeptidase F NA NA NA NA NA NA NA ENOG411E87P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF667) NA NA NA NA NA NA NA ENOG411E87Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein family UPF0029 NA NA NA NA NA NA NA ENOG411E878 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0658300 protein (cDNA clone:J033072L09, full insert sequence) Q0DYZ0 Q0DYZ0_ORYSJ Os02g0658300 Os02g0658300 OsJ_07806 OSNPB_020658300 ENOG411E879 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E876 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E877 Q9FHP8 Q9FHP8_ARATH Gb|AAC00605.1 21145 Gb|AAC00605.1 locus:2151784; AT5G37730 Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E874 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0523100 protein A0A0P0VJS0 A0A0P0VJS0_ORYSJ Os02g0523100 OSNPB_020523100 ENOG411E872 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S16 NA NA NA NA NA NA NA ENOG411E873 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0830500 protein Q6K9S7 Q6K9S7_ORYSJ Os02g0830500 OJ1124_D06.22 OsJ_08990 OSNPB_020830500 ENOG411E870 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-arabinono-14-lactone oxidase NA NA NA NA NA NA NA ENOG411E871 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0575200 protein Q6F367 Q6F367_ORYSJ OJ1268_B08.14 Os05g0575200 OSNPB_050575200 ENOG411DSJD GPT,F28O9.70 O22211,Q9M2M5 O22211_ARATH,Q9M2M5_ARATH Putative UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (T26J13.8/T26J13.8) (UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase) (UDP-glcnac-adolichol phosphate glcnac-1-p-transferase),At3g57220 (Glycosyl transferase family 4 protein) (UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase-like protein) ARA:AT2G41490-MONOMER;,ARA:AT3G57220-MONOMER; R-ATH-446193; 47725,47175 Putative UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (T26J13.8/T26J13.8) (UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase) (UDP-glcnac-adolichol phosphate glcnac-1-p-transferase),At3g57220 (Glycosyl transferase family 4 protein) (UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase-like protein) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; phospho-N-acetylmuramoyl-pentapeptide-transferase activity [GO:0008963]; UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity [GO:0003975]; dolichyl diphosphate biosynthetic process [GO:0006489]; protein N-linked glycosylation [GO:0006487],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; phospho-N-acetylmuramoyl-pentapeptide-transferase activity [GO:0008963]; UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity [GO:0003975]; dolichyl diphosphate biosynthetic process [GO:0006489]; polysaccharide biosynthetic process [GO:0000271]; protein N-linked glycosylation [GO:0006487] locus:2060555;,locus:2082603; AT2G41490,AT3G57220 UDP-N-acetylglucosamine--dolichyl-phosphate Os07g0661100 protein (Putative UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase) Q7EZZ0 Q7EZZ0_ORYSJ P0496C02.125 Os07g0661100 OSNPB_070661100 ENOG411DSJG MLN51 Q93ZJ9,Q8H1F3,A0A1P8AV18,F4HZK3 MLN51_ARATH,Q8H1F3_ARATH,A0A1P8AV18_ARATH,F4HZK3_ARATH Protein MLN51 homolog (Protein CASC3 homolog) (Protein barentsz) (Btz),CASC3/Barentsz eIF4AIII binding protein (Uncharacterized protein At1g15280),CASC3/Barentsz eIF4AIII binding protein FUNCTION: Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Stimulates the ATPase and RNA-helicase activities of EIF4A3. {ECO:0000250|UniProtKB:O15234}. 65693,63436,64992,63308 Protein MLN51 homolog (Protein CASC3 homolog) (Protein barentsz) (Btz),CASC3/Barentsz eIF4AIII binding protein (Uncharacterized protein At1g15280),CASC3/Barentsz eIF4AIII binding protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [GO:0000184]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380],cytoplasm [GO:0005737]; cytosol [GO:0005829]; mRNA binding [GO:0003729]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2016224;,locus:2037773; AT1G80000,AT1G15280 glycine-rich protein Os01g0595100 protein (cDNA, clone: J100082C16, full insert sequence),Os05g0534600 protein,Glycine-rich protein-like (Os01g0719400 protein) B7FAK7,Q6I5G3,Q5JL93 B7FAK7_ORYSJ,Q6I5G3_ORYSJ,Q5JL93_ORYSJ Os01g0595100 OSNPB_010595100,OSJNBa0053E05.23 Os05g0534600 OSNPB_050534600,Os01g0719400 OSNPB_010719400 P0480C01.34 ENOG411DSJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os08g0376300 protein (Putative leucine-rich receptor-like protein kinase) (cDNA clone:J023050N03, full insert sequence) Q8GVW0 Q8GVW0_ORYSJ OJ1705_C03.108 Os08g0376300 OsJ_27118 OSNPB_080376300 P0436B06.34 ENOG411EGK1 Q9STJ0,Q9M0W0,Q9STI9,F4JQK3 Q9STJ0_ARATH,Q9M0W0_ARATH,Q9STI9_ARATH,F4JQK3_ARATH RING/U-box superfamily protein (Uncharacterized protein AT4g12210) (Uncharacterized protein T4C9.50),RING/U-box superfamily protein (Uncharacterized protein AT4g05350),Uncharacterized protein AT4g12220 (Uncharacterized protein T4C9.60),RING/U-box superfamily protein 23035,23313,18466,8197 RING/U-box superfamily protein (Uncharacterized protein AT4g12210) (Uncharacterized protein T4C9.50),RING/U-box superfamily protein (Uncharacterized protein AT4g05350),Uncharacterized protein AT4g12220 (Uncharacterized protein T4C9.60),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2139074;,locus:2115924;,locus:2139089;,locus:2139044; AT4G12210,AT4G05350,AT4G12220,AT4G12190 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EGK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0131001 protein,Os04g0450825 protein,Os06g0160000 protein (Fragment),Os03g0390633 protein (Fragment),Os11g0155950 protein (Fragment) A0A0P0WSI1,A0A0P0WAU7,A0A0P0WT97,A0A0P0VYA2,A0A0P0XZ73 A0A0P0WSI1_ORYSJ,A0A0P0WAU7_ORYSJ,A0A0P0WT97_ORYSJ,A0A0P0VYA2_ORYSJ,A0A0P0XZ73_ORYSJ Os06g0131001 OSNPB_060131001,Os04g0450825 OSNPB_040450825,Os06g0160000 OSNPB_060160000,Os03g0390633 OSNPB_030390633,Os11g0155950 OSNPB_110155950 ENOG411EGK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGKM ASML3 Q56FQ1 Q56FQ1_ARATH Activator of spomin LUC3 (Basic-leucine zipper (BZIP) transcription factor family protein) 17148 Activator of spomin LUC3 (Basic-leucine zipper (BZIP) transcription factor family protein) transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2182840; AT5G07160 dna binding NA NA NA NA NA NA NA ENOG411EGKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TNP1/EN/SPM transposase NA NA NA NA NA NA NA ENOG411EGKF Q9SUX0 Q9SUX0_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (RCc3-like protein) 12780 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (RCc3-like protein) locus:2127485; AT4G22490 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EGKY MUG13.10,MUG13.8 Q9C6P4,Q9FF70,Q9FF68,A0A1P8ASS7 Q9C6P4_ARATH,Q9FF70_ARATH,Q9FF68_ARATH,A0A1P8ASS7_ARATH Cystatin/monellin superfamily protein (Uncharacterized protein F17J6.21),Cystatin/monellin superfamily protein,Cystatin/monellin superfamily protein (Uncharacterized protein At5g05060) 20251,19471,19610,20481 Cystatin/monellin superfamily protein (Uncharacterized protein F17J6.21),Cystatin/monellin superfamily protein,Cystatin/monellin superfamily protein (Uncharacterized protein At5g05060) locus:2015839;,locus:2175314;,locus:2175339; AT1G50690,AT5G05040,AT5G05060 NA NA NA NA NA NA NA NA ENOG411EGKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0737200 protein A0A0P0W396 A0A0P0W396_ORYSJ Os03g0737200 OSNPB_030737200 ENOG411EGKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411EGKR T18C15_3 Q9C538 Q9C538_ARATH C2H2 type zinc finger transcription factor family (Cys2/His2-type zinc finger protein, putative) (Zinc finger protein ATZF1, putative; 45974-42444) 102698 C2H2 type zinc finger transcription factor family (Cys2/His2-type zinc finger protein, putative) (Zinc finger protein ATZF1, putative; 45974-42444) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2197128; AT1G49900 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EGKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0262200 protein,Os11g0255800 protein,Os06g0470500 protein A0A0P0Y0Z9,A0A0P0Y0X4,A0A0N7KM38 A0A0P0Y0Z9_ORYSJ,A0A0P0Y0X4_ORYSJ,A0A0N7KM38_ORYSJ Os11g0262200 OSNPB_110262200,Os11g0255800 OSNPB_110255800,Os06g0470500 OSNPB_060470500 ENOG411EGKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inward rectifier potassium channel NA NA NA NA NA NA NA ENOG411EGKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EGKV SPH6,SPH24,SPH27,SPH28 F2Q9V4,P0DN92,Q9FI84,Q9FI83,Q9FI82 SPH6_ARATH,SPH24_ARATH,SPH27_ARATH,SPH28_ARATH,Q9FI82_ARATH S-protein homolog 6,S-protein homolog 24,S-protein homolog 27,S-protein homolog 28,Self-incompatibility protein-like protein 15887,17474,17750,17512,12616 S-protein homolog 6,S-protein homolog 24,S-protein homolog 27,S-protein homolog 28,Self-incompatibility protein-like protein extracellular region [GO:0005576]; rejection of self pollen [GO:0060320],integral component of membrane [GO:0016021] locus:2153679;,locus:2153694;,locus:2153699; AT5G05825,AT5G36906,AT5G06020,AT5G06030,AT5G06040 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411ECQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YIF1 NA NA NA NA NA NA NA ENOG411EE71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411EE76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411EE75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE74 Q5HZ31,A0A1P8B5G5,A0A1P8B5F2 Q5HZ31_ARATH,A0A1P8B5G5_ARATH,A0A1P8B5F2_ARATH At4g16670 (Auxin canalization protein (DUF828)),Auxin canalization protein (DUF828) 46310,37709,41090 At4g16670 (Auxin canalization protein (DUF828)),Auxin canalization protein (DUF828) locus:2129031; AT4G16670 Plant pleckstrin homology-like region NA NA NA NA NA NA NA ENOG411EE79 SBT3.9,SBT3.10 Q9ZSB0,Q9ZSB1 SBT39_ARATH,SBT3A_ARATH Subtilisin-like protease SBT3.9 (EC 3.4.21.-) (Subtilase subfamily 3 member 9) (AtSBT3.9),Subtilisin-like protease SBT3.10 (EC 3.4.21.-) (Subtilase subfamily 3 member 10) (AtSBT3.10) ARA:AT4G10520-MONOMER;,ARA:AT4G10530-MONOMER; 3.4.21.- 80670,81167 Subtilisin-like protease SBT3.9 (EC 3.4.21.-) (Subtilase subfamily 3 member 9) (AtSBT3.9),Subtilisin-like protease SBT3.10 (EC 3.4.21.-) (Subtilase subfamily 3 member 10) (AtSBT3.10) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252] locus:2127706;,locus:2127656; AT4G10520,AT4G10530 subtilase family NA NA NA NA NA NA NA ENOG411EE7B PIP2-6,PIP2E Q9ZV07,A0A1P8AZD1 PIP26_ARATH,A0A1P8AZD1_ARATH Probable aquaporin PIP2-6 (Plasma membrane intrinsic protein 2-6) (AtPIP2;6) (Plasma membrane intrinsic protein 2e) (PIP2e),Plasma membrane intrinsic protein 2E FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. 31050,24076 Probable aquaporin PIP2-6 (Plasma membrane intrinsic protein 2-6) (AtPIP2;6) (Plasma membrane intrinsic protein 2e) (PIP2e),Plasma membrane intrinsic protein 2E integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to nematode [GO:0009624],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed above ground, and in flower buds. {ECO:0000269|PubMed:11806824}. locus:2064885; AT2G39010 Major intrinsic protein NA NA NA NA NA NA NA ENOG411EE7K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411EE7J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retinal pigment epithelial membrane protein Carotenoid cleavage dioxygenase 8 homolog A, chloroplastic (OsCCD8a) (EC 1.13.11.-) (Protein D10-like) Q93VD5 CCD8A_ORYSJ CCD8A D10L Os01g0566500 LOC_Os01g38580 OsJ_02260 P0002B05.5 P0697C12.32 FUNCTION: May be involved in strigolactones biosynthesis. {ECO:0000250}. ENOG411EE7I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE7H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os09g0101200 protein (Fragment) A0A0P0XJJ7 A0A0P0XJJ7_ORYSJ Os09g0101200 OSNPB_090101200 ENOG411EE7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: resistance protein NA NA NA NA NA NA NA ENOG411EE7S REM19 Q9XIB5 REM19_ARATH B3 domain-containing protein REM19 (Protein RELATED TO VERNALIZATION 1) (Protein REPRODUCTIVE MERISTEM 19) FUNCTION: Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes. {ECO:0000250, ECO:0000269|PubMed:22232549}. 25850 B3 domain-containing protein REM19 (Protein RELATED TO VERNALIZATION 1) (Protein REPRODUCTIVE MERISTEM 19) nucleus [GO:0005634]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; cellular protein localization [GO:0034613]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:22232549}. locus:2010262; AT1G49480 B3 NA NA NA NA NA NA NA ENOG411EE7R WRKY10 Q9LG05 WRK10_ARATH Probable WRKY transcription factor 10 (Protein MINISEED 3) (WRKY DNA-binding protein 10) Reduced seed size,Similar to iku2-3 mutant seed and embryo smaller in size however the embryo cell size was comparable to control embryos. Precocious cellularization of the endosperm was observed. Expression levels of IKU2 reduced in mini3-1 background.,Similar to the phenotype of parental lines mini3-1 and iku2-3. Seed size and weight comparable to single mutants lines. Embryo defective; Cotyledon-A. Chaudhury-2007 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250, ECO:0000269|PubMed:16293693}. 54552 Probable WRKY transcription factor 10 (Protein MINISEED 3) (WRKY DNA-binding protein 10) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; endosperm development [GO:0009960]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the endosperm of embryo from the two nuclei stage to the late globular embryo stage, including the endosperm cellularization time. {ECO:0000269|PubMed:16293693}. TISSUE SPECIFICITY: Expressed in male gametophytes (pollen) and in the endosperm of fertilized ovules. {ECO:0000269|PubMed:16293693}. locus:2020467; AT1G55600 WRKY NA NA NA NA NA NA NA ENOG411EE7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411EE7Y O22841 CHI62_ARATH Endochitinase At2g43620 (EC 3.2.1.14) ARA:AT2G43620-MONOMER; 3.2.1.14 30378 Endochitinase At2g43620 (EC 3.2.1.14) apoplast [GO:0048046]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032]; defense response [GO:0006952]; polysaccharide catabolic process [GO:0000272] locus:2043919; AT2G43620 Chitin recognition protein NA NA NA NA NA NA NA ENOG411DSJ9 TRM6 F4J8I1,Q93W87,F4J8I0,F4J8I3,A0A1I9LM29 F4J8I1_ARATH,Q93W87_ARATH,F4J8I0_ARATH,F4J8I3_ARATH,A0A1I9LM29_ARATH Serine-rich adhesin for platelets-like protein,AT3g05760/F10A16_5 (C2H2 and C2HC zinc fingers superfamily protein),C2H2 and C2HC zinc fingers superfamily protein 78579,23436,89754,17540,89050 Serine-rich adhesin for platelets-like protein,AT3g05760/F10A16_5 (C2H2 and C2HC zinc fingers superfamily protein),C2H2 and C2HC zinc fingers superfamily protein U4/U6 x U5 tri-snRNP complex [GO:0046540]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mRNA splicing, via spliceosome [GO:0000398],membrane [GO:0016020],nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2074524;,locus:2074519; AT3G05750,AT3G05760 zinc finger matrin-type protein Expressed protein (Os03g0831900 protein) (cDNA clone:006-207-E08, full insert sequence) Q851A3 Q851A3_ORYSJ OSJNBb0027B08.2 LOC_Os03g61640 Os03g0831900 OsJ_13239 OSJNBa0078D06.25 OSNPB_030831900 ENOG411DSJ8 PP7 Q9FN02 PPP7_ARATH Serine/threonine-protein phosphatase 7 (EC 3.1.3.16) FUNCTION: Phosphatase active on para-nitrophenylphosphate (pNPP) and on various phosphoproteins such as myelin basic protein. Seems to act as a positive regulator of cryptochrome signaling involved in hypocotyl growth inhibition and cotyledon expansion under white and blue light conditions. Confers thermotolerance. Required for heat shock mediated-signaling pathway that leads to the expression of heat shock proteins (HSPs). {ECO:0000269|PubMed:12724537, ECO:0000269|PubMed:17238907, ECO:0000269|PubMed:9862444}. 3.1.3.16; 3.1.3.16 46619 Serine/threonine-protein phosphatase 7 (EC 3.1.3.16) nucleoplasm [GO:0005654]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; blue light signaling pathway [GO:0009785]; response to heat [GO:0009408] TISSUE SPECIFICITY: Expressed in leaves, and, to a lower extent, in stems and flowers. {ECO:0000269|PubMed:12724537}. locus:2163991; AT5G63870 serine threonine-protein phosphatase Serine/threonine-protein phosphatase (EC 3.1.3.16) A0A0N7KQ48 A0A0N7KQ48_ORYSJ Os08g0513000 OSNPB_080513000 ENOG411DSJ7 ANTR1,PHT4;4,PHT4:1 O82390,Q8GX78,A0A1P8B2Z7 ANTR1_ARATH,ANTR2_ARATH,A0A1P8B2Z7_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic (Anion transporter 1) (Na(+)/PI cotransporter 1) (Phosphate transporter PHT4;1) (Sodium/phosphate cotransporter 1),Ascorbate transporter, chloroplastic (Phosphate transporter PHT4;4) (AtPHT4;4) (Probable anion transporter 2),Phosphate transporter 41 DISRUPTION PHENOTYPE: No visible phenotype, but decreased reduced ascorbate content in leaves and decreased xanthophyll cycle for heat dissipation of excessive energy in photosynthesis. {ECO:0000269|PubMed:25557369}. FUNCTION: Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it. May act as an ascorbate transporter at the thylakoid membrane (Probable). {ECO:0000269|PubMed:18086223, ECO:0000269|PubMed:18353780, ECO:0000305|PubMed:25557369}.,FUNCTION: Inorganic phosphate and probable anion transporter (PubMed:18086223). Ascorbate transporter bridging the chloroplast envelope. Transports ascorbate from the cytosol into the chloroplast. Requires chloride ions and the presence of an electrochemical potential across the membrane for activity (PubMed:25557369). {ECO:0000269|PubMed:18086223, ECO:0000269|PubMed:25557369}. 3.6.3.27; 56499,59614,42558 Sodium-dependent phosphate transport protein 1, chloroplastic (Anion transporter 1) (Na(+)/PI cotransporter 1) (Phosphate transporter PHT4;1) (Sodium/phosphate cotransporter 1),Ascorbate transporter, chloroplastic (Phosphate transporter PHT4;4) (AtPHT4;4) (Probable anion transporter 2),Phosphate transporter 41 chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; inorganic phosphate transmembrane transporter activity [GO:0005315]; symporter activity [GO:0015293]; response to light stimulus [GO:0009416]; response to nematode [GO:0009624]; sodium ion transport [GO:0006814],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; inorganic phosphate transmembrane transporter activity [GO:0005315]; L-ascorbic acid transporter activity [GO:0015229]; anion transmembrane transport [GO:0098656]; L-ascorbic acid transport [GO:0015882]; xanthophyll cycle [GO:0010028],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Expressed in the developing embryo at the upturned-U stage. {ECO:0000269|PubMed:14564522}. TISSUE SPECIFICITY: Expressed in flower buds, sepals of mature flowers and mature leaves, less in senescent leaves and at low levels in roots. {ECO:0000269|PubMed:18353780, ECO:0000269|PubMed:19513231}.,TISSUE SPECIFICITY: Expressed in stems, developing siliques, leaf mesophyll cells and sepals of mature flowers. Not detected in roots. Detected in palisade tissue rather than spongy tissue from the leaves (PubMed:25557369). {ECO:0000269|PubMed:14564522, ECO:0000269|PubMed:19513231, ECO:0000269|PubMed:25557369}. locus:2060694;,locus:2126066; AT2G29650,AT4G00370 Anion transporter Probable anion transporter 1, chloroplastic (Phosphate transporter 4;1),Probable anion transporter 4, chloroplastic (Phosphate transporter 4;4) Q9SDI4,Q652N5 PHT41_ORYSJ,PHT44_ORYSJ PHT4;1 Os01g0279700 LOC_Os01g17240 OsJ_01311 OSJNBa0036E02.3 P0003H10.9,PHT4;4 Os09g0570400 LOC_Os09g39680 OJ1003_C09.34 OsJ_30419 FUNCTION: Probable anion transporter. {ECO:0000250}. ENOG411EIWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AcrB/AcrD/AcrF family NA NA NA NA NA NA NA ENOG411E4V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA succinate dehydrogenase subunit 3 Succinate dehydrogenase subunit 3-2, mitochondrial,Succinate dehydrogenase subunit 3-1, mitochondrial Q84VK7,Q6ZH92 SDH32_ORYSJ,SDH31_ORYSJ SDH3-2 Os07g0521000 LOC_Os07g33680 OJ1657_A07.107 OsJ_24481,SDH3-1 Os02g0121800 LOC_Os02g02940 OJ1020_C02.23 OsJ_05172 FUNCTION: Membrane-anchoring subunit of succinate dehydrogenase (SDH). {ECO:0000250|UniProtKB:P69054}. ENOG411E4V8 Q1PEU2 Q1PEU2_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 27555 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family integral component of membrane [GO:0016021] locus:2062974; AT2G46300 NA NA NA NA NA NA NA NA ENOG411E4V1 SNE Q9LUB6 SNE_ARATH F-box protein SNE (Protein SNEEZY) (Sleepy protein 2) FUNCTION: Essential component of a SCF-type E3 ligase complex that positively regulates the gibberellin signaling pathway. Upon gibberellin treatment, such complex probably mediates the ubiquitination and subsequent degradation of DELLA proteins (GAI, RGA and RGL2), some repressors of the gibberellin pathway, leading to activate the pathway. Can partially complement the absence of GID2/SLY1. {ECO:0000269|PubMed:15161962, ECO:0000269|PubMed:15308775}. PATHWAY: Protein modification; protein ubiquitination. 17966 F-box protein SNE (Protein SNEEZY) (Sleepy protein 2) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; gibberellic acid mediated signaling pathway [GO:0009740]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; regulation of gibberellic acid mediated signaling pathway [GO:0009937]; regulation of shoot system development [GO:0048831] TISSUE SPECIFICITY: Highly expressed in flowers and at much lower level in seedlings, rosette leaves and green siliques. {ECO:0000269|PubMed:15308775}. locus:2164723; AT5G48170 F-Box protein F-box domain containing protein (Os03g0196500 protein) Q10QH2 Q10QH2_ORYSJ Os03g0196500 LOC_Os03g10040 Os03g0196500 OSNPB_030196500 ENOG411E4V0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0775000 protein A0A0P0VQG5 A0A0P0VQG5_ORYSJ Os02g0775000 OSNPB_020775000 ENOG411E4V3 EPFL1 Q9LFT5,A0A1P8BBV7 EPFL1_ARATH,A0A1P8BBV7_ARATH EPIDERMAL PATTERNING FACTOR-like protein 1 (EPF-like protein 1) [Cleaved into: MEPFL1],EPIDERMAL PATTERNING FACTOR-like protein FUNCTION: Controls stomatal patterning. {ECO:0000250}. 13652,14406 EPIDERMAL PATTERNING FACTOR-like protein 1 (EPF-like protein 1) [Cleaved into: MEPFL1],EPIDERMAL PATTERNING FACTOR-like protein extracellular region [GO:0005576]; guard cell differentiation [GO:0010052]; stomatal complex development [GO:0010374] locus:2145367; AT5G10310 epidermal patterning factor-like protein Os02g0756100 protein (cDNA clone:001-025-H12, full insert sequence) Q6Z682 Q6Z682_ORYSJ Os02g0756100 Os02g0756100 OsJ_08444 OSNPB_020756100 P0627E03.35 ENOG411E4V2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0712300 protein Q5N8D7 Q5N8D7_ORYSJ Os01g0712300 B1142C05.16 OSNPB_010712300 P0456F08.41 ENOG411E4V5 RPL22B,RPL22A,RPL22C Q9M9W1,Q9SRX7,Q9FE58 RL222_ARATH,RL221_ARATH,RL223_ARATH 60S ribosomal protein L22-2,Putative 60S ribosomal protein L22-1,60S ribosomal protein L22-3 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 14018,14451,14047 60S ribosomal protein L22-2,Putative 60S ribosomal protein L22-1,60S ribosomal protein L22-3 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256] locus:2078107;,locus:2024715;,locus:2180260; AT3G05560,AT1G02830,AT5G27770 60S ribosomal protein Os07g0674200 protein (Putative 60S ribosomal protein L22) (cDNA clone:001-012-A06, full insert sequence),60S ribosomal protein L22-2, putative, expressed (BRI1-KD interacting protein 108) (Os03g0343500 protein) (cDNA clone:001-019-G04, full insert sequence) (cDNA clone:001-030-E04, full insert sequence) (cDNA clone:J033022G11, full insert sequence) Q6YSX0,Q762A6 Q6YSX0_ORYSJ,Q762A6_ORYSJ P0618H09.1 Os07g0674200 OsJ_25551 OSNPB_070674200 P0037D09.3,bip108 LOC_Os03g22340 Os03g0343500 OSNPB_030343500 ENOG411E4V4 ATJ72 Q0WTI8,B3H694 DNJ72_ARATH,B3H694_ARATH Chaperone protein dnaJ 72 (AtDjC72) (AtJ72),Chaperone DnaJ-domain superfamily protein FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 20646,23662 Chaperone protein dnaJ 72 (AtDjC72) (AtJ72),Chaperone DnaJ-domain superfamily protein integral component of membrane [GO:0016021] locus:2063280; AT2G41000 chaperone protein DNAJ NA NA NA NA NA NA NA ENOG411E4V7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hsp20 alpha crystallin family protein Hsp20/alpha crystallin family protein, expressed (Os10g0437900 protein) Q7XE46 Q7XE46_ORYSJ Os10g0437900 LOC_Os10g30180 Os10g0437900 OSNPB_100437900 ENOG411E4V6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DJ-1/PfpI family NA NA NA NA NA NA NA ENOG411E4VY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF569) Os06g0161800 protein (cDNA clone:002-115-A12, full insert sequence),Os06g0161100 protein,Os06g0161900 protein (cDNA clone:002-100-B09, full insert sequence),Os06g0162100 protein Q5WA99,A3B8M3,Q5WA97,A0A0N7KLK8 Q5WA99_ORYSJ,A3B8M3_ORYSJ,Q5WA97_ORYSJ,A0A0N7KLK8_ORYSJ Os06g0161800 Os06g0161800 OSNPB_060161800 P0681F10.29,Os06g0161100 OsJ_20215 OSNPB_060161100,Os06g0161900 OSNPB_060161900 P0681F10.31,Os06g0162100 OSNPB_060162100 ENOG411E4VX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion channel NA NA NA NA NA NA NA ENOG411E4VZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os06g0666400 protein Q655W4 Q655W4_ORYSJ Os06g0666400 Os06g0666400 OSNPB_060666400 P0637D03.22 ENOG411E4VQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0159900 protein) (cDNA clone:J013001B14, full insert sequence) Q10RG6 Q10RG6_ORYSJ Os03g0159900 LOC_Os03g06390 OsJ_09490 OSNPB_030159900 ENOG411E4VP CASP1,CASP3 Q9SIH4,Q9ZQI2 CASP1_ARATH,CASP3_ARATH Casparian strip membrane protein 1 (AtCASP1),Casparian strip membrane protein 3 (AtCASP3) DISRUPTION PHENOTYPE: Disorganised deposition of Casparian strips. {ECO:0000269|PubMed:21593871}. FUNCTION: Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion. {ECO:0000269|PubMed:21593871}. 21970,24161 Casparian strip membrane protein 1 (AtCASP1),Casparian strip membrane protein 3 (AtCASP3) Casparian strip [GO:0048226]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536]; protein homodimerization activity [GO:0042803]; cell wall modification [GO:0042545]; cell-cell junction assembly [GO:0007043] locus:2053514;,locus:2038638; AT2G36100,AT2G27370 cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion NA NA NA NA NA NA NA ENOG411E4VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Blue copper-binding protein-like (Os07g0112700 protein) (cDNA clone:J033012A01, full insert sequence) Q7F1H3 Q7F1H3_ORYSJ OJ1118_G09.114 OJ1513_F02.107 Os07g0112700 OsJ_22853 OSNPB_070112700 ENOG411E4VR Q8RUZ5,A0A1P8B133,A0A1P8B120 Q8RUZ5_ARATH,A0A1P8B133_ARATH,A0A1P8B120_ARATH Transcription factor SCREAM-like protein (Uncharacterized protein At2g40435) (Uncharacterized protein At2g40435/T2P4.23),Transcription factor SCREAM-like protein 17569,14495,14704 Transcription factor SCREAM-like protein (Uncharacterized protein At2g40435) (Uncharacterized protein At2g40435/T2P4.23),Transcription factor SCREAM-like protein protein dimerization activity [GO:0046983] locus:2828302; AT2G40435 Transcription factor BHLH transcription factor (BHLH transcription factor bHLH033, putative, expressed) (Os03g0338400 protein) (cDNA clone:J033029P04, full insert sequence),Os07g0676600 protein (cDNA, clone: J075101F12, full insert sequence) Q10LR1,Q8LII5 Q10LR1_ORYSJ,Q8LII5_ORYSJ LOC_Os03g21970 Os03g0338400 OsJ_10770 OSNPB_030338400,OJ1167_G06.116 Os07g0676600 OSNPB_070676600 ENOG411E4VU Q9M0L3 CSPLR_ARATH CASP-like protein 1F1 (AtCASPL1F1) 18669 CASP-like protein 1F1 (AtCASPL1F1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: In flowers, expressed in the anther wall. {ECO:0000269|PubMed:24920445}. locus:2117308; AT4G25040 CASP-like protein NA NA NA NA NA NA NA ENOG411E4VT SNS1 Q9FZD2 Q9FZD2_ARATH Chromatin modification-like protein (T1K7.16 protein) (Uncharacterized protein At1g26470) 15209 Chromatin modification-like protein (T1K7.16 protein) (Uncharacterized protein At1g26470) NuA4 histone acetyltransferase complex [GO:0035267]; histone acetylation [GO:0016573]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2197955; AT1G26470 Pfam:CT20 Os05g0512500 protein (cDNA clone:001-103-A12, full insert sequence) Q6L528 Q6L528_ORYSJ Os05g0512500 OJ1005_B11.17 OsJ_19175 OSNPB_050512500 ENOG411E4VW Q9C901 Q9C901_ARATH DNA-binding enhancer protein-like protein (Uncharacterized protein At3g06610) (Uncharacterized protein F5E6.6) 12795 DNA-binding enhancer protein-like protein (Uncharacterized protein At3g06610) (Uncharacterized protein F5E6.6) cytosol [GO:0005829]; DNA binding [GO:0003677] locus:2084324; AT3G06610 huntingtin-interacting protein Huntingtin interacting protein K, putative, expressed (Os03g0832300 protein) (cDNA clone:J033033G01, full insert sequence) Q7Y139 Q7Y139_ORYSJ Os03g0832300 LOC_Os03g61680 Os03g0832300 OsJ_13242 OSJNBa0078D06.29 OSNPB_030832300 ENOG411E4VV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E4VI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Rna binding protein Os02g0684400 protein (cDNA clone:J013001N07, full insert sequence) Q6ETZ7 Q6ETZ7_ORYSJ Os02g0684400 OJ1212_A08.13 OSNPB_020684400 ENOG411E4VH Q84JA7 Q84JA7_ARATH Far-red impaired responsive (FAR1) family protein (Uncharacterized protein At3g07500) 25315 Far-red impaired responsive (FAR1) family protein (Uncharacterized protein At3g07500) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585] locus:2079651; AT3G07500 FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411E4VK RHY1A Q852U6 RHY1A_ARATH Probable E3 ubiquitin-protein ligase RHY1A (EC 2.3.2.27) (RING-H2 finger Y1a) (RING-H2 zinc finger protein RHY1a) (RING-type E3 ubiquitin transferase RHY1A) FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9ZT50}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 2.3.2.27 28447 Probable E3 ubiquitin-protein ligase RHY1A (EC 2.3.2.27) (RING-H2 finger Y1a) (RING-H2 zinc finger protein RHY1a) (RING-type E3 ubiquitin transferase RHY1A) metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2007273; AT1G49850 RING-H2 finger protein Os03g0206900 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:002-153-B07, full insert sequence) Q10Q76 Q10Q76_ORYSJ LOC_Os03g10890 Os03g0206900 OsJ_09847 OSNPB_030206900 ENOG411E4VJ AZI1,EARLI1 Q9SU35,Q39176,Q9SU34,Q9SU33 ERLL1_ARATH,ERLI1_ARATH,ERLL2_ARATH,ERLL3_ARATH pEARLI1-like lipid transfer protein 1 (Protein AZELAIC ACID INDUCED 1),Lipid transfer protein EARLI 1 (Protein EARLY ARABIDOPSIS ALUMINUM INDUCED 1) (pEARLI1),pEARLI1-like lipid transfer protein 2,pEARLI1-like lipid transfer protein 3 DISRUPTION PHENOTYPE: Reduced cutin accumulation due to lower cutin biosynthesis. Early flowering in long-day conditions. Compromised pathogen-induced (e.g. Pseudomonas syringae pv. tomato DC3000 and PmaDG3) glycerol-3-phosphate- (G3P) and azelaic acid-(AA) dependent systemic acquired resistance (SAR). Increased tendencies in cellular damage after freezing treatment. {ECO:0000269|PubMed:19342588, ECO:0000269|PubMed:21492954, ECO:0000269|PubMed:21815977, ECO:0000269|PubMed:23602565}.,DISRUPTION PHENOTYPE: Increased tendency for freezing-induced cellular damage. Reduced cutin accumulation due to lower cutin biosynthesis. Early flowering in long-day conditions. {ECO:0000269|PubMed:17786468, ECO:0000269|PubMed:21815977}.,DISRUPTION PHENOTYPE: Reduced cutin accumulation due to lower cutin biosynthesis. Early flowering in long-day conditions. {ECO:0000269|PubMed:21815977}. Complete loss of systemic acquired resistance-J. Greenberg-2009 FUNCTION: Probable lipid transfer protein (LTP). Seems to control the flowering process and lignin synthesis. Together with DIR1, required for glycerol-3-phosphate- (G3P) and azelaic acid- (AA) induced systemic acquired resistance (SAR). Component of plant systemic immunity involved in priming defenses in a AA-dependent manner, by modulating production and/or translocation of a mobile signal(s) during SAR. Confers resistance to Botrytis cinerea and Pseudomonas syringae pv. tomato DC3000 and PmaDG3. May be involved in induced systemic resistance (ISR) mediated by non-pathogenic bacteria (e.g. P. fluorescens GM30). Prevents electrolyte leakage during freezing damage. {ECO:0000269|PubMed:17257167, ECO:0000269|PubMed:19342588, ECO:0000269|PubMed:21492954, ECO:0000269|PubMed:21815977, ECO:0000269|PubMed:22375709, ECO:0000269|PubMed:23602565}.,FUNCTION: Probable lipid transfer protein (LTP). May improve freezing survival. Seems to control the flowering process and lignin synthesis. Has an auxiliary role for germinability and early seedling development under low temperature and salt stress conditions, probably in an abscisic acid- (ABA) dependent manner. Confers resistance to Botrytis cinerea and exhibits anti-fungal activity, at least against Saccharomyces cerevisiae, B. cinerea and Fusarium oxysporum, probably by increasing their membrane permeability. {ECO:0000269|PubMed:17257167, ECO:0000269|PubMed:17786468, ECO:0000269|PubMed:21556912, ECO:0000269|PubMed:21815977, ECO:0000269|PubMed:22759515}.,FUNCTION: Probable lipid transfer protein (LTP). May improve freezing survival. Seems to control the flowering process and lignin synthesis. Confers resistance to Botrytis cinerea. {ECO:0000269|PubMed:17257167, ECO:0000269|PubMed:17786468, ECO:0000269|PubMed:21815977}.,FUNCTION: Probable lipid transfer protein (LTP). May improve freezing survival. {ECO:0000269|PubMed:17786468}. 16766,17308,18789,18354 pEARLI1-like lipid transfer protein 1 (Protein AZELAIC ACID INDUCED 1),Lipid transfer protein EARLI 1 (Protein EARLY ARABIDOPSIS ALUMINUM INDUCED 1) (pEARLI1),pEARLI1-like lipid transfer protein 2,pEARLI1-like lipid transfer protein 3 apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast outer membrane [GO:0009707]; endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506]; protein self-association [GO:0043621]; cellular response to cold [GO:0070417]; cold acclimation [GO:0009631]; defense response to fungus [GO:0050832]; induced systemic resistance [GO:0009682]; plant-type hypersensitive response [GO:0009626]; systemic acquired resistance [GO:0009627],chloroplast outer membrane [GO:0009707]; endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; defense response to fungus [GO:0050832]; induced systemic resistance [GO:0009682]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to salt stress [GO:0009651],cell wall [GO:0005618]; chloroplast outer membrane [GO:0009707]; endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; defense response to fungus [GO:0050832],cell wall [GO:0005618]; extracellular region [GO:0005576] DEVELOPMENTAL STAGE: Induced during germination in embryonic tissues, and strongly expressed in certain parts of young seedlings, in the tips of cotyledons and to a certain degree in developing leaves and roots. {ECO:0000269|PubMed:21556912}. TISSUE SPECIFICITY: Mostly expressed in aerial part of seedlings, and, to a lower extent, in roots. Higher basal levels in early-flowering ecotypes. {ECO:0000269|PubMed:11202439, ECO:0000269|Ref.1}. locus:2135595;,locus:2135610;,locus:2135625;,locus:2135635; AT4G12470,AT4G12480,AT4G12490,AT4G12500 Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin-like protein Os03g0103300 protein (Fragment) A0A0P0VRX0 A0A0P0VRX0_ORYSJ Os03g0103300 OSNPB_030103300 ENOG411E4VM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY Cysteine proteinase inhibitor 3 (Oryzacystatin III) (OC-III) (Oryzacystatin-3),Cysteine proteinase inhibitor (Fragment) Q6I570,A0A0N7KKR9 CYT3_ORYSJ,A0A0N7KKR9_ORYSJ Os05g0409300 LOC_Os05g33880 OSJNBb0014K18.11,Os05g0409300 OSNPB_050409300 FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. ENOG411E4VN Q8LG60,Q9M9W0,A0A1P8BCY5 Q8LG60_ARATH,Q9M9W0_ARATH,A0A1P8BCY5_ARATH Hypoxia-responsive family protein (Uncharacterized protein At5g27760),F18C1.18 protein (Hypoxia-responsive family protein),Hypoxia-responsive family protein 10655,10967,8064 Hypoxia-responsive family protein (Uncharacterized protein At5g27760),F18C1.18 protein (Hypoxia-responsive family protein),Hypoxia-responsive family protein integral component of mitochondrial inner membrane [GO:0031305]; mitochondrial respiratory chain supercomplex [GO:0097249]; mitochondrial respiratory chain complex IV assembly [GO:0033617] locus:2180335;,locus:2078032; AT5G27760,AT3G05550 Hypoxia-responsive family Os07g0673900 protein (cDNA clone:J023024E09, full insert sequence),Hypoxia-responsive family protein-like (Os02g0592400 protein) (cDNA clone:001-121-C12, full insert sequence) (cDNA clone:J023147K15, full insert sequence) A3BNC1,Q69L71 A3BNC1_ORYSJ,Q69L71_ORYSJ Os07g0673900 OsJ_25548 OSNPB_070673900,Os02g0592400 OsJ_07339 OSJNBa0016G10.13 OSNPB_020592400 ENOG411E4VA OFP7 Q9ZU65 OFP7_ARATH Transcription repressor OFP7 (Ovate family protein 7) (AtOFP7) FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP7 show kidney-shaped cotyledons, round and curled leaves, small rosette size, late flowering, reduced fertilization and round seeds. {ECO:0000305|PubMed:21886836}. 35543 Transcription repressor OFP7 (Ovate family protein 7) (AtOFP7) nucleus [GO:0005634]; plasma membrane [GO:0005886]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2046308; AT2G18500 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E4VC SAP7,SAP1 Q9SZ69,Q6NNI8 SAP7_ARATH,SAP1_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 7 (AtSAP7),Zinc finger A20 and AN1 domain-containing stress-associated protein 1 (AtSAP1) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 18991,17820 Zinc finger A20 and AN1 domain-containing stress-associated protein 7 (AtSAP7),Zinc finger A20 and AN1 domain-containing stress-associated protein 1 (AtSAP1) plasmodesma [GO:0009506]; DNA binding [GO:0003677]; zinc ion binding [GO:0008270],DNA binding [GO:0003677]; zinc ion binding [GO:0008270] locus:2118036;,locus:2034650; AT4G12040,AT1G12440 zinc finger A20 and AN1 domain-containing stress-associated protein NA NA NA NA NA NA NA ENOG411E4VB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0217000 protein) Q10PY2 Q10PY2_ORYSJ LOC_Os03g11780 Os03g0217000 OsJ_09928 OSNPB_030217000 ENOG411E4VE ERF113 Q9LYU3 EF113_ARATH Ethylene-responsive transcription factor ERF113 (Protein RELATED TO AP2 6L) FUNCTION: Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. 24288 Ethylene-responsive transcription factor ERF113 (Protein RELATED TO AP2 6L) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to freezing [GO:0071497]; ethylene-activated signaling pathway [GO:0009873]; glucosinolate metabolic process [GO:0019760]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000269|PubMed:21069430}. locus:2183861; AT5G13330 Transcription factor NA NA NA NA NA NA NA ENOG411E4VD Q93W91 Q93W91_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At3g62550) 18265 Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At3g62550) vacuole [GO:0005773]; hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2096089; AT3G62550 Universal stress protein NA NA NA NA NA NA NA ENOG411E4VG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain-containing protein NA NA NA NA NA NA NA ENOG411DY18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os02g0160400 protein (Putative monosaccharide transporter) (cDNA clone:002-172-F02, full insert sequence) (cDNA clone:J023063D11, full insert sequence) Q6H7U6 Q6H7U6_ORYSJ Os02g0160400 B1103G11.41 OJ9003_G05.6 OSNPB_020160400 ENOG411DY1I PSBQ1,PSBQ2 Q9XFT3,Q41932 PSBQ1_ARATH,PSBQ2_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit),Oxygen-evolving enhancer protein 3-2, chloroplastic (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) FUNCTION: Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions. {ECO:0000269|PubMed:16822865}. MetaCyc:AT4G21280-MONOMER; 23866,24643 Oxygen-evolving enhancer protein 3-1, chloroplastic (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit),Oxygen-evolving enhancer protein 3-2, chloroplastic (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] TISSUE SPECIFICITY: Expressed in green tissue, with high steady-state mRNA levels in leaves. Not expressed in roots. {ECO:0000269|PubMed:15198198}. locus:2127393;,locus:2115703; AT4G21280,AT4G05180 oxygen-evolving enhancer protein Oxygen-evolving enhancer protein 3, chloroplastic (OEE3) (LP02),Os05g0313100 protein Q0D5P8,A0A0P0WKP3 PSBQ_ORYSJ,A0A0P0WKP3_ORYSJ Os07g0544800 LOC_Os07g36080 OJ1582_D10.19,Os05g0313100 OSNPB_050313100 ENOG411DY1C PTB3 Q6ICX4,A8MR27 PTBP3_ARATH,A8MR27_ARATH Polypyrimidine tract-binding protein homolog 3,Polypyrimidine tract-binding protein 3 FUNCTION: Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA (By similarity). {ECO:0000250}. R-ATH-72163; 48234,48020 Polypyrimidine tract-binding protein homolog 3,Polypyrimidine tract-binding protein 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380],RNA binding [GO:0003723] locus:2018630; AT1G43190 polypyrimidine tract-binding protein Os05g0437300 protein (cDNA clone:J033107C19, full insert sequence),Os01g0867800 protein (cDNA clone:J023006N01, full insert sequence),Os01g0867800 protein (Fragment),Os01g0867800 protein Q0DHV7,Q0JHE8,A0A0P0VAZ3,A0A0N7KE46 Q0DHV7_ORYSJ,Q0JHE8_ORYSJ,A0A0P0VAZ3_ORYSJ,A0A0N7KE46_ORYSJ Os05g0437300 Os05g0437300 OsJ_18672 OSNPB_050437300,Os01g0867800 Os01g0867800 OSNPB_010867800,Os01g0867800 OSNPB_010867800 ENOG411DY1G F4JLS3,F4JLS2 F4JLS3_ARATH,F4JLS2_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 28891,40376 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491],peroxisome [GO:0005777]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2130469; AT4G16330 2OG-Fe(II) oxygenase superfamily Os06g0162500 protein (Putative anthocyanidin synthase) (cDNA clone:J023029O18, full insert sequence) Q9XIW9 Q9XIW9_ORYSJ Os06g0162500 OsJ_20223 OSNPB_060162500 P0681F10.36 ENOG411DY1Y PUP21,PUP10 O49726,O49725 PUP21_ARATH,PUP10_ARATH Purine permease 21 (AtPUP21),Probable purine permease 10 (AtPUP10) 43087,43477 Purine permease 21 (AtPUP21),Probable purine permease 10 (AtPUP10) integral component of membrane [GO:0016021]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863]; response to nematode [GO:0009624] TISSUE SPECIFICITY: Expressed in mesophyll cells. {ECO:0000269|PubMed:27701112}. locus:2141907; AT4G18220,AT4G18210 purine permease NA NA NA NA NA NA NA ENOG411E0YH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein Os02g0598200 B3 domain-containing protein Os02g0598200,Os02g0598200 protein,Os02g0598200 protein (Fragment) Q6K5K2,A0A0P0VLE6,A0A0P0VL79 Y2982_ORYSJ,A0A0P0VLE6_ORYSJ,A0A0P0VL79_ORYSJ Os02g0598200 LOC_Os02g38470 OJ1212_D02.14,Os02g0598200 OSNPB_020598200 ENOG411E0YB O22909,Q9C7X2,Q8GYE3,F4IL37,F4I548 O22909_ARATH,Q9C7X2_ARATH,Q8GYE3_ARATH,F4IL37_ARATH,F4I548_ARATH At2g47350 (HIT zinc finger and PAPA-1-like domain-containing protein) (Uncharacterized protein At2g47350),HIT zinc finger and PAPA-1-like domain-containing protein (Uncharacterized protein F13N6.4),HIT zinc finger and PAPA-1-like domain-containing protein (Uncharacterized protein At1g56460/F13N6_4),HIT zinc finger and PAPA-1-like domain-containing protein 53945,59649,55763,41603,59167 At2g47350 (HIT zinc finger and PAPA-1-like domain-containing protein) (Uncharacterized protein At2g47350),HIT zinc finger and PAPA-1-like domain-containing protein (Uncharacterized protein F13N6.4),HIT zinc finger and PAPA-1-like domain-containing protein (Uncharacterized protein At1g56460/F13N6_4),HIT zinc finger and PAPA-1-like domain-containing protein Ino80 complex [GO:0031011]; chromatin remodeling [GO:0006338]; regulation of transcription, DNA-templated [GO:0006355] locus:2065129;,locus:2010703; AT2G47350,AT1G56460 PAPA-1-like family protein zinc finger (HIT type) family protein Os12g0561200 protein,Os03g0811500 protein (PAPA-1-like conserved region family protein, expressed) (cDNA clone:J033122M20, full insert sequence),Os12g0561200 protein (Fragment) Q0IMM4,Q7XZH4,A0A0P0YBA4 Q0IMM4_ORYSJ,Q7XZH4_ORYSJ,A0A0P0YBA4_ORYSJ Os12g0561200 Os12g0561200 OSNPB_120561200,LOC_Os03g59680 Os03g0811500 OsJ_13069 OSJNBb0033J23.10 OSNPB_030811500,Os12g0561200 OSNPB_120561200 ENOG411E0YD RBP45C,RBP45B,RBP45A Q93W34,Q9SAB3,Q9FPJ8 RP45C_ARATH,RB45B_ARATH,RB45A_ARATH Polyadenylate-binding protein RBP45C (Poly(A)-binding protein RBP45C) (RNA-binding protein 45C) (AtRBP45C),Polyadenylate-binding protein RBP45B (Poly(A)-binding protein RBP45B) (RNA-binding protein 45B) (AtRBP45B),Polyadenylate-binding protein RBP45A (Poly(A)-binding protein RBP45A) (RNA-binding protein 45A) (AtRBP45A) FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. {ECO:0000250}.,FUNCTION: Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation. {ECO:0000269|PubMed:21120628}. 44972,44115,42324 Polyadenylate-binding protein RBP45C (Poly(A)-binding protein RBP45C) (RNA-binding protein 45C) (AtRBP45C),Polyadenylate-binding protein RBP45B (Poly(A)-binding protein RBP45B) (RNA-binding protein 45B) (AtRBP45B),Polyadenylate-binding protein RBP45A (Poly(A)-binding protein RBP45A) (RNA-binding protein 45A) (AtRBP45A) cytosol [GO:0005829]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; mRNA processing [GO:0006397],nucleus [GO:0005634]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; response to cytokinin [GO:0009735]; response to ozone [GO:0010193] TISSUE SPECIFICITY: Mostly expressed in seedlings and stems, and, to a lower extent, in leaves and flowers. {ECO:0000269|PubMed:11105760}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers, siliques, and seedlings. Present in immature anther tissues (tapetum cells) and mature pollen grains. {ECO:0000269|PubMed:11105760, ECO:0000269|PubMed:17159297, ECO:0000269|PubMed:21120628}.,TISSUE SPECIFICITY: Mostly expressed in seedlings, and, to a lower extent, in leaves, stems, and flowers. Present in immature anther tissues (tapetum cells) and mature pollen grains. {ECO:0000269|PubMed:11105760, ECO:0000269|PubMed:17159297}. locus:2116322;,locus:2027372;,locus:2160210; AT4G27000,AT1G11650,AT5G54900 RNA-binding protein Os03g0569900 protein (Putative RNA binding protein) (RNA recognition motif family protein, expressed) (cDNA clone:J033051E20, full insert sequence),Os03g0569900 protein,Os04g0625800 protein (cDNA clone:J023019P13, full insert sequence),Os07g0516900 protein (Fragment),Os08g0190200 protein,Os07g0516900 protein,Os03g0569900 protein (Fragment) Q10HZ8,A3AJP7,Q0J9Y2,C7J4X9,A0A0P0XCP2,A0A0N7KNJ2,A0A0P0X6L8,A0A0P0W096 Q10HZ8_ORYSJ,A3AJP7_ORYSJ,Q0J9Y2_ORYSJ,C7J4X9_ORYSJ,A0A0P0XCP2_ORYSJ,A0A0N7KNJ2_ORYSJ,A0A0P0X6L8_ORYSJ,A0A0P0W096_ORYSJ Os03g0569900 LOC_Os03g37270 OSJNBa0004B24.1 OSNPB_030569900,Os03g0569900 OsJ_11491 OSNPB_030569900,Os04g0625800 Os04g0625800 OSNPB_040625800,Os07g0516900 Os07g0516900 OSNPB_070516900,Os08g0190200 OSNPB_080190200,Os07g0516900 OSNPB_070516900,Os03g0569900 OSNPB_030569900 ENOG411E0YE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1605 NA NA NA NA NA NA NA ENOG411E0YF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger Os01g0547200 protein (Fragment) A0A0P0V3S3 A0A0P0V3S3_ORYSJ Os01g0547200 OSNPB_010547200 ENOG411E0YG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox associated leucine zipper NA NA NA NA NA NA NA ENOG411E0YY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Class III peroxidase Peroxidase (EC 1.11.1.7),Os04g0134800 protein Q6AVZ7,A0A0P0W6J0 Q6AVZ7_ORYSJ,A0A0P0W6J0_ORYSJ Os05g0134700 OSNPB_050134700 P0519E07.7,Os04g0134800 OSNPB_040134800 ENOG411E0YZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411E0YR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA secologanin synthase-like Cytochrome P450-like (Os01g0627800 protein) (cDNA clone:J033063B21, full insert sequence) Q5ZE52 Q5ZE52_ORYSJ Os01g0627800 Os01g0627800 OSNPB_010627800 P0006C01.39 P0688A04.17 ENOG411E0YU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Mitochondrial transcription termination factor-like (Os06g0225200 protein) Q67UH0 Q67UH0_ORYSJ Os06g0225200 OsJ_20658 OSNPB_060225200 P0638H11.42 P0690H04.3 ENOG411E0YV PME29,PME10,PME66,PME55 Q4PSN0,O64479,Q4PSQ5,Q3E9D3,A0A1P8AZK0 PME29_ARATH,PME10_ARATH,PME66_ARATH,PME55_ARATH,A0A1P8AZK0_ARATH Probable pectinesterase 29 (PE 29) (EC 3.1.1.11) (Pectin methylesterase 29) (AtPME29),Putative pectinesterase 10 (PE 10) (EC 3.1.1.11) (Pectin methylesterase 10) (AtPME10),Probable pectinesterase 66 (PE 66) (EC 3.1.1.11) (Pectin methylesterase 66) (AtPME66),Probable pectinesterase 55 (PE 55) (EC 3.1.1.11) (Pectin methylesterase 55) (AtPME55),Pectinesterase (EC 3.1.1.11) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.,PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. {ECO:0000256|RuleBase:RU000589}. ARA:AT3G24130-MONOMER;,ARA:AT2G19150-MONOMER;,ARA:AT2G47280-MONOMER;,ARA:AT5G18990-MONOMER; 3.1.1.11 37272,37633,37017,36460,31564 Probable pectinesterase 29 (PE 29) (EC 3.1.1.11) (Pectin methylesterase 29) (AtPME29),Putative pectinesterase 10 (PE 10) (EC 3.1.1.11) (Pectin methylesterase 10) (AtPME10),Probable pectinesterase 66 (PE 66) (EC 3.1.1.11) (Pectin methylesterase 66) (AtPME66),Probable pectinesterase 55 (PE 55) (EC 3.1.1.11) (Pectin methylesterase 55) (AtPME55),Pectinesterase (EC 3.1.1.11) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell wall [GO:0005618]; aspartyl esterase activity [GO:0045330]; lyase activity [GO:0016829]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2093736;,locus:2059030;,locus:2065145;,locus:2179659; AT3G24130,AT2G19150,AT2G47280,AT5G18990 pectinesterase Os07g0655600 protein,Pectinesterase (EC 3.1.1.11) Q0D411,A0A0P0V238 Q0D411_ORYSJ,A0A0P0V238_ORYSJ Os07g0655600 Os07g0655600 OSNPB_070655600,Os01g0300100 OSNPB_010300100 ENOG411E0YW PCMP-A4 Q9M9R6 PPR43_ARATH Pentatricopeptide repeat-containing protein At1g14470 61742 Pentatricopeptide repeat-containing protein At1g14470 locus:2012517; AT1G14470 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E0Y8 HSP70-5 Q9S9N1 HSP7E_ARATH Heat shock 70 kDa protein 5 (Heat shock protein 70-5) (AtHsp70-5) (Heat shock protein 70b) FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. R-ATH-3371453;R-ATH-3371497;R-ATH-3371568;R-ATH-3371571;R-ATH-6798695;R-ATH-72163;R-ATH-8876725; 70915 Heat shock 70 kDa protein 5 (Heat shock protein 70-5) (AtHsp70-5) (Heat shock protein 70b) cell wall [GO:0005618]; chloroplast [GO:0009507]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; response to heat [GO:0009408]; response to virus [GO:0009615] locus:2200462; AT1G16030 heat shock NA NA NA NA NA NA NA ENOG411E0Y9 MBR2,MBR1,RHG1A O49500,Q9ZQF9,Q9FMM4,Q9MAJ1,A0A1P8B1Z6,A0A1P8AR79,F4IIG9 MBR2_ARATH,MBR1_ARATH,RHG1A_ARATH,Q9MAJ1_ARATH,A0A1P8B1Z6_ARATH,A0A1P8AR79_ARATH,F4IIG9_ARATH E3 ubiquitin-protein ligase MBR2 (EC 2.3.2.27) (HAL3-interacting protein 1 homolog) (AtHIP1) (MED25-binding RING-H2 protein 2) (RING-H2 finger MBR2) (RING-type E3 ubiquitin transferase MBR2),E3 ubiquitin-protein ligase MBR1 (EC 2.3.2.27) (MED25-binding RING-H2 protein 1) (RING-H2 finger MBR1) (RING-type E3 ubiquitin transferase MBR1),Probable E3 ubiquitin-protein ligase RHG1A (EC 2.3.2.27) (RING-H2 finger G1a) (RING-H2 zinc finger protein RHG1a) (RING-type E3 ubiquitin transferase RHG1A),F27F5.26 (RING/U-box superfamily protein),RING/U-box superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutant plants mbr1-1 and mbr2-1 show delayed flowering. {ECO:0000269|PubMed:22992513}. FUNCTION: E3 ubiquitin-protein ligase that functions as regulator of MED25 stability by targeting MED25 for degradation in a RING-H2-dependent way. Proteasome-dependent degradation of MED25 seems to activate its function as positive regulator of FLOWERING LOCUS T (FT) and is important to induce the expression of FT and consequently to promote flowering. May function downstream of HAL3 and be required for HAL3-regulated plant growth. Activation of MBR2 by HAL3 may lead to the degradation of cell cycle suppressors, resulting in enhancement of cell division and plant growth. {ECO:0000269|PubMed:19543273, ECO:0000269|PubMed:22992513}.,FUNCTION: E3 ubiquitin-protein ligase that functions as regulator of MED25 stability by targeting MED25 for degradation in a RING-H2-dependent way. Proteasome-dependent degradation of MED25 seems to activate its function as positive regulator of FLOWERING LOCUS T (FT) and is important to induce the expression of FT and consequently to promote flowering. {ECO:0000269|PubMed:22992513}.,FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9ZT50}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 2.3.2.27 71539,76019,75284,71226,73767,65828,85232 E3 ubiquitin-protein ligase MBR2 (EC 2.3.2.27) (HAL3-interacting protein 1 homolog) (AtHIP1) (MED25-binding RING-H2 protein 2) (RING-H2 finger MBR2) (RING-type E3 ubiquitin transferase MBR2),E3 ubiquitin-protein ligase MBR1 (EC 2.3.2.27) (MED25-binding RING-H2 protein 1) (RING-H2 finger MBR1) (RING-type E3 ubiquitin transferase MBR1),Probable E3 ubiquitin-protein ligase RHG1A (EC 2.3.2.27) (RING-H2 finger G1a) (RING-H2 zinc finger protein RHG1a) (RING-type E3 ubiquitin transferase RHG1A),F27F5.26 (RING/U-box superfamily protein),RING/U-box superfamily protein metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; flower development [GO:0009908]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of growth [GO:0040008]; vegetative to reproductive phase transition of meristem [GO:0010228],metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; flower development [GO:0009908]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; vegetative to reproductive phase transition of meristem [GO:0010228],metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] TISSUE SPECIFICITY: Expressed in stems, flowers, green siliques, cauline leaves, seeds and roots. {ECO:0000269|PubMed:9781696}. locus:2124271;,locus:2160031;,locus:2028225;,locus:2053613; AT4G34040,AT2G15530,AT5G42940,AT1G45180 zinc finger Probable E3 ubiquitin-protein ligase HIP1 (EC 2.3.2.27) (HAL3-interacting protein 1) (OsHIP1) (RING-H2 finger HIP1) (RING-type E3 ubiquitin transferase HIP1),Os04g0648800 protein Q7XTV7,A0A0P0WFU9 HIP1_ORYSJ,A0A0P0WFU9_ORYSJ HIP1 Os04g0648800 LOC_Os04g55510 OsJ_16417 OSJNBa0010D21.9,Os04g0648800 OSNPB_040648800 FUNCTION: Probable E3 ubiquitin-protein ligase that functions downstream of HAL3 and is required for HAL3-regulated plant growth. Activation of HIP1 by HAL3 may lead to the degradation of cell cycle suppressors, resulting in enhancement of cell division and plant growth. {ECO:0000269|PubMed:19543273}. ENOG411E0Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411E0Y1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein OSJNBb0096E05.10 protein (Os04g0289700 protein),OSJNBb0096E05.9 protein (Os04g0289600 protein) (cDNA clone:002-176-E01, full insert sequence),Os01g0382400 protein (Putative pathogenesis-related protein) (cDNA clone:J023072K01, full insert sequence),Os01g0382000 protein (Putative pathogenesis-related protein 1) Q7XRR1,Q7XW57,Q8W084,Q7F2P0 Q7XRR1_ORYSJ,Q7XW57_ORYSJ,Q8W084_ORYSJ,Q7F2P0_ORYSJ OSJNBb0096E05.10 Os04g0289700 OSNPB_040289700,Os04g0289600 OSJNBb0096E05.9 OSNPB_040289600,Os01g0382400 Os01g0382400 B1096D03.54 OSJNBa0091E23.10 OSNPB_010382400,Os01g0382000 Os01g0382000 B1096D03.48 OSJNBa0091E23.4 OSNPB_010382000 ENOG411E0Y2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E0Y3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cbl-interacting protein kinase Putative CBL-interacting protein kinase 13 (EC 2.7.11.1) (OsCIPK13) Q5QNM6 CIPKD_ORYSJ CIPK13 Os01g0206300 LOC_Os01g10870 OSJNBa0016I09.1 P0451C06.32 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411E0Y4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E0Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0159300 protein (Zinc finger protein) (cDNA clone:J033058G15, full insert sequence) Q0JQI1 Q0JQI1_ORYSJ Os01g0159300 Os01g0159300 OSNPB_010159300 ENOG411E0Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E0Y7 TRM25 A0A1P8BFY7,Q9FIS0 A0A1P8BFY7_ARATH,Q9FIS0_ARATH LOW protein: M-phase inducer phosphatase-like protein 68292,79216 LOW protein: M-phase inducer phosphatase-like protein locus:2174103; AT5G62170 NA NA NA NA NA NA NA NA ENOG411E612 RPS21B,RPS21C Q9M337,Q3E902 RS211_ARATH,RS212_ARATH 40S ribosomal protein S21-1,40S ribosomal protein S21-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 9074,9113 40S ribosomal protein S21-1,40S ribosomal protein S21-2 cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000461]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000461]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2084515;,locus:2180275; AT3G53890,AT5G27700 40S ribosomal protein S21 40S ribosomal protein S21 P35687,Q7Y199 RS21_ORYSJ,Q7Y199_ORYSJ RPS21 Os03g0345200 LOC_Os03g22460,OSJNBa0039O18.25 Os03g0667800 OSNPB_030667800 ENOG411E610 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA stress-related chlorophyll a b binding protein NA NA NA NA NA NA NA ENOG411E611 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0730600 protein A0A0P0V7T3 A0A0P0V7T3_ORYSJ Os01g0730600 OSNPB_010730600 ENOG411E616 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os12g0158400 protein Q2QXG2 Q2QXG2_ORYSJ Os12g0158400 LOC_Os12g06160 Os12g0158400 OSNPB_120158400 ENOG411E617 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E614 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0730000 protein Q9AX11 Q9AX11_ORYSJ Os01g0730000 OSNPB_010730000 P0435H01.20 P0456A01.37 ENOG411E615 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E618 RPL38A; RPL38B O22860 RL38_ARATH 60S ribosomal protein L38 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 8122 60S ribosomal protein L38 cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribonucleoprotein complex assembly [GO:0022618]; translation [GO:0006412] locus:2058172;locus:2097503; AT2G43460AT3G59540; 60S ribosomal protein L38 60S ribosomal protein L38, putative, expressed (Os07g0546700 protein) (Os11g0433900 protein) (Putative 60S ribosomal protein L38) (Ribosomal L38e protein family) (cDNA clone:001-031-H04, full insert sequence) Q8GVY2 Q8GVY2_ORYSJ OJ1612_A04.113 Os07g0546700 LOC_Os11g24610 Os11g0433900 OsJ_33784 OSNPB_070546700 OSNPB_110433900 ENOG411E619 IAA33 Q9FKM7 IAA33_ARATH Auxin-responsive protein IAA33 (Indoleacetic acid-induced protein 33) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. MISCELLANEOUS: Lacks the EAR-like motif (Domain I) which is one of the conserved features of the Aux/IAA family. 18942 Auxin-responsive protein IAA33 (Indoleacetic acid-induced protein 33) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] locus:2174562; AT5G57420 AUX/IAA family Auxin-responsive protein Q0J9G7 Q0J9G7_ORYSJ Os04g0653300 Os04g0653300 OSNPB_040653300 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. ENOG411E61B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411E61C DPMS3 Q8LEQ4,F4HWT0 DPM3_ARATH,F4HWT0_ARATH Dolichol-phosphate mannose synthase subunit 3 (DPM synthase subunit 3) (Dol-P-Man synthase1) (Dolichol phosphate-mannose biosynthesis regulatory protein),Dolichol-phosphate mannosyltransferase-like protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21558543}. FUNCTION: Regulates the biosynthesis of dolichol phosphate-mannose. Regulatory subunit of the dolichol-phosphate mannose (DPM) synthase complex; essential for the ER localization and stable expression of DPMS1. {ECO:0000269|PubMed:21558543}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT1G48140-MONOMER;MetaCyc:AT1G48140-MONOMER; 9811,8826 Dolichol-phosphate mannose synthase subunit 3 (DPM synthase subunit 3) (Dol-P-Man synthase1) (Dolichol phosphate-mannose biosynthesis regulatory protein),Dolichol-phosphate mannosyltransferase-like protein dolichol-phosphate-mannose synthase complex [GO:0033185]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; GPI anchor biosynthetic process [GO:0006506]; protein O-linked mannosylation [GO:0035269],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; protein glycosylation [GO:0006486] locus:2023762; AT1G48140 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Os02g0749450 protein (cDNA, clone: J065210E11, full insert sequence) B7F922 B7F922_ORYSJ Os02g0749450 OSNPB_020749450 ENOG411E61A Q8VZU1 Q8VZU1_ARATH Expressed protein (LYR family of Fe/S cluster biogenesis protein) (Uncharacterized protein At2g39725) 10373 Expressed protein (LYR family of Fe/S cluster biogenesis protein) (Uncharacterized protein At2g39725) locus:505006309; AT2G39725 succinate dehydrogenase assembly factor 1 homolog Os08g0278600 protein,Os08g0278600 protein (cDNA clone:002-174-H11, full insert sequence) Q6Z1L3,Q6Z1L4 Q6Z1L3_ORYSJ,Q6Z1L4_ORYSJ P0026A08.1-1 Os08g0278600 OSJNBa0091M20.26-1 OSNPB_080278600,P0026A08.1-2 Os08g0278600 OsJ_26716 OSJNBa0091M20.26-2 OSNPB_080278600 ENOG411E61F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Os11g0496500 protein (cDNA clone:001-109-E07, full insert sequence) Q0ISL6 Q0ISL6_ORYSJ Os11g0496500 Os11g0496500 OsJ_33960 OSNPB_110496500 ENOG411E61G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E61D Q9S7A3 MOC2A_ARATH Molybdopterin synthase sulfur carrier subunit (Molybdenum cofactor synthesis protein 2 small subunit) (Molybdenum cofactor synthesis protein 2A) (MOCS2A) (Sulfur carrier protein MOCS2A) FUNCTION: Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin. {ECO:0000255|HAMAP-Rule:MF_03051}. PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03051}. 10533 Molybdopterin synthase sulfur carrier subunit (Molybdenum cofactor synthesis protein 2 small subunit) (Molybdenum cofactor synthesis protein 2A) (MOCS2A) (Sulfur carrier protein MOCS2A) cytosol [GO:0005829]; nucleotide binding [GO:0000166]; auxin-activated signaling pathway [GO:0009734]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; molybdenum incorporation into molybdenum-molybdopterin complex [GO:0018315] locus:2124660; AT4G10100 Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. After interaction with MOCS2B the sulfur is then transferred to precursor Z to form molybdopterin (By similarity) Molybdopterin synthase sulfur carrier subunit (Molybdenum cofactor synthesis protein 2 small subunit) (Molybdenum cofactor synthesis protein 2A) (MOCS2A) (Sulfur carrier protein MOCS2A),Os02g0558300 protein (Fragment) Q6YVX4,A0A0P0VKL3 MOC2A_ORYSJ,A0A0P0VKL3_ORYSJ Os02g0558300 LOC_Os02g35200 OsJ_006938 OSJNBb0038F20.16,Os02g0558300 OSNPB_020558300 FUNCTION: Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin. {ECO:0000255|HAMAP-Rule:MF_03051}. ENOG411E61E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: chromosome 15 open reading frame 41 NA NA NA NA NA NA NA ENOG411E61J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E61K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity) NA NA NA NA NA NA NA ENOG411E61H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1278 ECA1 protein, putative, expressed (Os03g0296600 protein) (cDNA clone:002-155-H11, full insert sequence) Q10MT0 Q10MT0_ORYSJ Os03g0296600 LOC_Os03g18530 Os03g0296600 OsJ_10489 OSNPB_030296600 ENOG411E61I Q1G3B4 Q1G3B4_ARATH Cold-regulated protein 7640 Cold-regulated protein integral component of membrane [GO:0016021] locus:4515103014; AT3G03341 NA Little protein 1 (Os01g0644200 protein) Q6QB11 Q6QB11_ORYSJ LP1 Os01g0644200 OsJ_02799 OSNPB_010644200 ENOG411E61N SDH7B,SDH7A Q3E870,Q9C5E8 SDH7B_ARATH,SDH7A_ARATH Succinate dehydrogenase subunit 7B, mitochondrial,Succinate dehydrogenase subunit 7A, mitochondrial PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle. {ECO:0000305}. ARA:AT3G47833-MONOMER;,MetaCyc:AT3G47833-MONOMER; 10860,10298 Succinate dehydrogenase subunit 7B, mitochondrial,Succinate dehydrogenase subunit 7A, mitochondrial mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; tricarboxylic acid cycle [GO:0006099],apoplast [GO:0048046]; mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) [GO:0005749]; mitochondrion [GO:0005739]; respiratory chain complex II [GO:0045273]; tricarboxylic acid cycle [GO:0006099] locus:505006710;,locus:505006388; AT5G62575,AT3G47833 NA NA NA NA NA NA NA NA ENOG411E61M Q6IDB1,A8MSB3,F4K459 Q6IDB1_ARATH,A8MSB3_ARATH,F4K459_ARATH Protein kish FUNCTION: Involved in the early part of the secretory pathway. {ECO:0000256|RuleBase:RU910717}. 8007,7853,10598 Protein kish integral component of membrane [GO:0016021],endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; intracellular [GO:0005622]; intracellular transport [GO:0046907]; protein secretion [GO:0009306] locus:504955054; AT5G20165 Protein of unknown function (DUF1242) Protein kish Q6AVD3,Q0E1V7 Q6AVD3_ORYSJ,Q0E1V7_ORYSJ Os05g0251500 Os05g0251500 OJ1171_H02.10 OSNPB_050251500,Os02g0299600 Os02g0299600 OSNPB_020299600 FUNCTION: Involved in the early part of the secretory pathway. {ECO:0000256|RuleBase:RU910717}. ENOG411E61R Q9LSN5 Q9LSN5_ARATH AT3g17120/K14A17_24 (Transmembrane protein) 23311 AT3g17120/K14A17_24 (Transmembrane protein) integral component of membrane [GO:0016021] locus:2086157; AT3G17120 NA NA NA NA NA NA NA NA ENOG411E61S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial import inner membrane translocase subunit Os12g0128600 protein (Small zinc finger, putative, expressed) (cDNA clone:J013072B16, full insert sequence),Os11g0131700 protein (Small zinc finger, putative, expressed) (cDNA, clone: J100058A16, full insert sequence) Q2QY90,Q2RAZ9 Q2QY90_ORYSJ,Q2RAZ9_ORYSJ LOC_Os12g03460 Os12g0128600 OsJ_35097 OSNPB_120128600,Os11g0131700 LOC_Os11g03710 OsJ_32824 OSNPB_110131700 ENOG411E61P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:UPF0057 Os06g0651900 protein (cDNA clone:002-145-C08, full insert sequence) Q0DAH9 Q0DAH9_ORYSJ Os06g0651900 Os06g0651900 OsJ_22186 OSNPB_060651900 ENOG411E61Q PSBX Q9SKI3 Q9SKI3_ARATH Expressed protein (Photosystem II subunit X) (Putative PSII-X protein) (Uncharacterized protein At2g06520; T12H3.7) 11814 Expressed protein (Photosystem II subunit X) (Putative PSII-X protein) (Uncharacterized protein At2g06520; T12H3.7) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979] locus:2054582; AT2G06520 photosystem II subunit X NA NA NA NA NA NA NA ENOG411E61V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0044M19.3 protein (Os04g0385900 protein) Q7XLQ3 Q7XLQ3_ORYSJ Os04g0385900 OSJNBa0044M19.3 OSNPB_040385900 ENOG411E61W Q8L5A1 Q8L5A1_ARATH At1g78995 (Expressed protein) 17159 At1g78995 (Expressed protein) locus:505006230; AT1G78995 NA Os06g0704200 protein (Fragment),Os02g0138100 protein C7J4C3,A0A0P0VEL5 C7J4C3_ORYSJ,A0A0P0VEL5_ORYSJ Os06g0704200 Os06g0704200 OSNPB_060704200,Os02g0138100 OSNPB_020138100 ENOG411E61T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin-like lectin domain Os05g0143600 protein Q60EY2 Q60EY2_ORYSJ Os05g0143600 Os05g0143600 OJ1607_F09.4 OsJ_17084 OSNPB_050143600 ENOG411E61U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E61Z rps15 P56805 RR15_ARATH 30S ribosomal protein S15, chloroplastic 10719 30S ribosomal protein S15, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504954735; ATCG01120 30S ribosomal protein S15 chloroplastic Os05g0427800 protein Q0DI00 Q0DI00_ORYSJ Os05g0427800 Os05g0427800 OSNPB_050427800 ENOG411E61X bZIP6,bZIP7 O81002,Q9T062 O81002_ARATH,Q9T062_ARATH At2g22850 (Basic leucine-zipper 6) (Putative embryo-abundant protein),BZIP transcription factor-like protein (Basic leucine-zipper 7) (Uncharacterized protein At4g37730) 26039,35699 At2g22850 (Basic leucine-zipper 6) (Putative embryo-abundant protein),BZIP transcription factor-like protein (Basic leucine-zipper 7) (Uncharacterized protein At4g37730) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212],transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2059211;,locus:2137539; AT2G22850,AT4G37730 bZIP transcription factor NA NA NA NA NA NA NA ENOG411E61Y EML Q9M9H3 Q9M9H3_ARATH F14O23.11 protein (Gcn5-interacting protein) (Uncharacterized protein At1g71730) 19578 F14O23.11 protein (Gcn5-interacting protein) (Uncharacterized protein At1g71730) locus:2013061; AT1G71730 NA Os05g0181901 protein (Os05g0182000 protein) Q5KQJ3 Q5KQJ3_ORYSJ Os05g0182000 Os05g0181901 OsJ_17359 OSNPB_050182000 P0453H11.14 ENOG411EC5G PUP12,PUP13 Q9FLL4,Q8RY83 PUP12_ARATH,PUP13_ARATH Putative purine permease 12 (AtPUP12),Probable purine permease 13 (AtPUP13) 39623,40138 Putative purine permease 12 (AtPUP12),Probable purine permease 13 (AtPUP13) integral component of membrane [GO:0016021]; membrane [GO:0016020]; purine nucleobase transmembrane transporter activity [GO:0005345]; purine nucleobase transport [GO:0006863] locus:2163026;,locus:2138203; AT5G41160,AT4G08700 purine nucleobase transmembrane transporter activity NA NA NA NA NA NA NA ENOG411EC5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os02g0580900 protein (Fragment) A0A0P0VKR4 A0A0P0VKR4_ORYSJ Os02g0580900 OSNPB_020580900 ENOG411EC5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os07g0413300 protein (cDNA clone:002-120-D12, full insert sequence),Os07g0413300 protein (cDNA clone:J013131H13, full insert sequence),Os06g0357000 protein (Fragment) B7F4K4,Q0D707,A0A0P0WWD6 B7F4K4_ORYSJ,Q0D707_ORYSJ,A0A0P0WWD6_ORYSJ Os07g0413300 OSNPB_070413300,Os07g0413300 Os07g0413300 OSNPB_070413300,Os06g0357000 OSNPB_060357000 ENOG411EC5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EC5B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Expressed protein (Os12g0118800 protein) (cDNA clone:001-113-F04, full insert sequence),Os11g0219400 protein (cDNA clone:J023034F19, full insert sequence) (cDNA clone:J023034G19, full insert sequence),Os11g0108600 protein Q2QYH5,Q0ITT4,A0A0N7KSB3 Q2QYH5_ORYSJ,Q0ITT4_ORYSJ,A0A0N7KSB3_ORYSJ LOC_Os12g02660 Os12g0118800 OSNPB_120118800,Os11g0219400 Os11g0219400 OSNPB_110219400,Os11g0108600 OSNPB_110108600 ENOG411EC5A T10B6_10 Q9LF49 Q9LF49_ARATH Uncharacterized protein At5g17350 (Uncharacterized protein T10B6_10) 19658 Uncharacterized protein At5g17350 (Uncharacterized protein T10B6_10) locus:2167255; AT5G17350 NA NA NA NA NA NA NA NA ENOG411EC5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 NA NA NA NA NA NA NA ENOG411EC5M SPEAR4 Q9SHQ9 SPER4_ARATH Protein SPEAR4 (SPL-like, EAR-containing protein 4) (TCP interactor containing EAR motif protein 3) FUNCTION: Adapter-like transcriptional repressor recruiting TPL/TPR coepressors to inhibit TCP transcription factors (By similarity). May be involved in leaf development. {ECO:0000250|UniProtKB:Q6IDB0, ECO:0000305|PubMed:23444332}. MISCELLANEOUS: Knock down expression of SPEAR2/TIE4 and SPEAR4/TIE3 by RNAi in a SPEAR3/TIE1 null mutant produces lines displaying epinastic leaves. {ECO:0000269|PubMed:23444332}. 33603 Protein SPEAR4 (SPL-like, EAR-containing protein 4) (TCP interactor containing EAR motif protein 3) leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:23444332}. locus:2018778; AT1G29010 NA NA NA NA NA NA NA NA ENOG411EC5K GATL5 Q9FWY9 GATL5_ARATH Probable galacturonosyltransferase-like 5 (EC 2.4.1.-) FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 41156 Probable galacturonosyltransferase-like 5 (EC 2.4.1.-) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; mucilage pectin metabolic process [GO:0048363]; pectin biosynthetic process [GO:0045489]; plant-type cell wall assembly [GO:0071668]; polysaccharide biosynthetic process [GO:0000271] locus:2024740; AT1G02720 Glycosyl transferase family 8 NA NA NA NA NA NA NA ENOG411EC5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EC5I F11F8_11 Q9SF50 Q9SF50_ARATH Exocyst subunit EXO70 family protein (Exocyst subunit exo70 family protein H3) (Uncharacterized protein F11F8_11) R-ATH-5620916; 72115 Exocyst subunit EXO70 family protein (Exocyst subunit exo70 family protein H3) (Uncharacterized protein F11F8_11) exocyst [GO:0000145]; pollen tube [GO:0090406]; exocytosis [GO:0006887] locus:2074994; AT3G09530 exocyst subunit EXO70 family protein H3 NA NA NA NA NA NA NA ENOG411EC5H FAF4 Q9SFG6 FAF4_ARATH Protein FANTASTIC FOUR 4 FUNCTION: Regulates the size of the shoot meristem by modulating the CLV3-WUS feedback loop. Can repress WUS but is under negative control by CLV3. {ECO:0000269|PubMed:21176196}. 33895 Protein FANTASTIC FOUR 4 regulation of meristem growth [GO:0010075] DEVELOPMENTAL STAGE: Expressed throughout development. Decreased expression in the shoot apex during the transition to flowering. Expressed in developing embryos from the early heart stage until torpedo stage. {ECO:0000269|PubMed:21176196}. TISSUE SPECIFICITY: Expressed in the shoot apex and young siliques. Detected in provascular and vascular tissue, but not in the vegetative meristem. In inflorescences, restricted to the base of the flower and to the vasculature of the stem and the pedicels, but absent from young flowers. Detected in the center of the inflorescence meristem. {ECO:0000269|PubMed:21176196}. locus:2083008; AT3G06020 Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411EC5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EC5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EC5T F9F8.11,AtRLP53,F9F8.17,RLP19,AtRLP32,RLP43,RLP53,RLP34,RLP33 Q9SRL7,Q9S9U3,Q9SRL2,Q9ZUK3,Q9M9X0,Q9LJW7,A0A1R7T3K3,F4IHG3,A0A1I9LN77,F4J519,F4J8G2,A0A1I9LN74,A0A1I9LN75,A0A1I9LN76 Q9SRL7_ARATH,Q9S9U3_ARATH,Q9SRL2_ARATH,Q9ZUK3_ARATH,Q9M9X0_ARATH,Q9LJW7_ARATH,A0A1R7T3K3_ARATH,F4IHG3_ARATH,A0A1I9LN77_ARATH,F4J519_ARATH,F4J8G2_ARATH,A0A1I9LN74_ARATH,A0A1I9LN75_ARATH,A0A1I9LN76_ARATH Disease resistance protein, putative; 7647-10478 (Putative disease resistance protein) (Receptor like protein 35),F15P11.4 protein (Receptor like protein 53),Putative disease resistance protein (Receptor like protein 34),Putative disease resistance protein (Receptor like protein 19),Putative disease resistance protein (Receptor like protein 32),Disease resistance protein-like (Receptor like protein 43),Receptor like protein 53,Leucine-rich repeat (LRR) family protein,Receptor like protein 34,Receptor like protein 33 104784,106675,106181,109407,97303,79794,106806,48053,103636,99014,97614,95486,96469,102653 Disease resistance protein, putative; 7647-10478 (Putative disease resistance protein) (Receptor like protein 35),F15P11.4 protein (Receptor like protein 53),Putative disease resistance protein (Receptor like protein 34),Putative disease resistance protein (Receptor like protein 19),Putative disease resistance protein (Receptor like protein 32),Disease resistance protein-like (Receptor like protein 43),Receptor like protein 53,Leucine-rich repeat (LRR) family protein,Receptor like protein 34,Receptor like protein 33 integral component of membrane [GO:0016021],chloroplast [GO:0009507]; integral component of membrane [GO:0016021] locus:2074633;,locus:2144392;,locus:2055772;,locus:2078112;,locus:2090754;,locus:5019474716;,locus:2085537;,locus:2078102; AT3G11080,AT5G27060,AT2G15080,AT3G05650,AT3G28890,AT2G15042,AT3G11010,AT3G05660 receptor like protein 32 NA NA NA NA NA NA NA ENOG411EC5S BHLH133 Q7XHI5,A0A1P8AZD3 BH133_ARATH,A0A1P8AZD3_ARATH Transcription factor bHLH133 (Basic helix-loop-helix protein 133) (AtbHLH133) (bHLH 133) (bHLH transcription factor bHLH133),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 40060,45122 Transcription factor bHLH133 (Basic helix-loop-helix protein 133) (AtbHLH133) (bHLH 133) (bHLH transcription factor bHLH133),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2061609; AT2G20100 HLH NA NA NA NA NA NA NA ENOG411EC5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain NA NA NA NA NA NA NA ENOG411EC5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EC5Y ASIL1 Q9SYG2 ASIL1_ARATH Trihelix transcription factor ASIL1 (6B-interacting protein 1-like 1) (Trihelix DNA-binding protein ASIL1) DISRUPTION PHENOTYPE: Reduced growth of leaves, petioles, stems and siliques. Delayed flowering. {ECO:0000269|PubMed:19155348}. Small seedlings with slightly darker green orbicular leaf blades and shorter leaf petioles than WT. Adult plants are 17% shorter than WT.,Small seedlings with slightly darker green orbicular leaf blades and shorter leaf petioles than WT. Adult plants are 17% shorter than WT. Short siliques small seeds lower seed weight than WT. Delayed flowering in long days. Dwarf; Dark green leaves with abnormal morphology; Short petioles; Short siliques; Small seeds; Late flowering-K. Rozwadowski-2009 FUNCTION: Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. 41732 Trihelix transcription factor ASIL1 (6B-interacting protein 1-like 1) (Trihelix DNA-binding protein ASIL1) nucleolus [GO:0005730]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; embryo development ending in seed dormancy [GO:0009793]; regulation of seed germination [GO:0010029]; regulation of shoot system development [GO:0048831]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; seed maturation [GO:0010431]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. locus:2014445; AT1G54060 Inherit from KOG: Transcription factor NA NA NA NA NA NA NA ENOG411EC56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cation proton NA NA NA NA NA NA NA ENOG411EC55 CYP98A9,CYP98A8 Q9CA60,Q9CA61 C98A9_ARATH,C98A8_ARATH Cytochrome P450 98A9 (EC 1.14.-.-) (p-coumarate 3-hydroxylase),Cytochrome P450 98A8 (EC 1.14.-.-) (p-coumarate 3-hydroxylase) DISRUPTION PHENOTYPE: Drastic reduction in flower buds of the content in N1,N5,N10-tri-(hydroxyferuloyl)-spermidine and N1,N5-di(hydroxyferuloyl)-N10-sinapoyl-spermidine. {ECO:0000269|PubMed:19762055}. FUNCTION: Acts redundantly with CYP98A8 as tricoumaroylspermidine meta-hydroxylase. Involved in phenolamide synthesis, but a recombinant CYP98A9 is unable to hydroxylate triferuloylspermidine. Unable to use 5-O-(4-coumaroyl) D-quinate or 5-O-(4-coumaroyl) shikimate as substrates. {ECO:0000269|PubMed:11429408, ECO:0000269|PubMed:19779199}.,FUNCTION: Acts redundantly with CYP98A9 as tricoumaroylspermidine meta-hydroxylase. Catalyzes also the meta-hydroxylation of the three triferuloylspermidine phenolic rings. Unable to use 5-O-(4-coumaroyl) D-quinate or 5-O-(4-coumaroyl) shikimate as substrates. {ECO:0000269|PubMed:11429408, ECO:0000269|PubMed:19762055, ECO:0000269|PubMed:19779199}. ARA:AT1G74550-MONOMER;,ARA:AT1G74540-MONOMER;MetaCyc:AT1G74540-MONOMER; 1.14.-.- 55419,56741 Cytochrome P450 98A9 (EC 1.14.-.-) (p-coumarate 3-hydroxylase),Cytochrome P450 98A8 (EC 1.14.-.-) (p-coumarate 3-hydroxylase) integral component of membrane [GO:0016021]; membrane [GO:0016020]; dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity [GO:0072548]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity [GO:0072549]; tricoumaroylspermidine meta-hydroxylase activity [GO:0072547]; lignin biosynthetic process [GO:0009809]; spermidine metabolic process [GO:0008216],integral component of membrane [GO:0016021]; membrane [GO:0016020]; dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity [GO:0072548]; diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity [GO:0072551]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity [GO:0072549]; monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity [GO:0072552]; tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity [GO:0072532]; tricoumaroylspermidine meta-hydroxylase activity [GO:0072547]; triferuloylspermidine meta-hydroxylase activity [GO:0072550]; lignin biosynthetic process [GO:0009809]; spermidine metabolic process [GO:0008216] TISSUE SPECIFICITY: Strongly expressed in root tips, inflorescence tips, young flower buds, stamen, tapetum and pollen. Detected in aging vasculature. {ECO:0000269|PubMed:19779199}.,TISSUE SPECIFICITY: Strongly expressed in inflorescence tips, young flower buds, seeds, stamen, tapetum and pollen. {ECO:0000269|PubMed:19762055, ECO:0000269|PubMed:19779199}. locus:2019250;,locus:2019240; AT1G74550,AT1G74540 cytochrome P450 family 98 subfamily A polypeptide 8 NA NA NA NA NA NA NA ENOG411EC54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EC50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os12g0270300 protein) (cDNA clone:J023048O04, full insert sequence),Os12g0273300 protein (Fragment),Os12g0270300 protein (Fragment),Os12g0271800 protein Q2QU88,A0A0N7KTV3,A0A0P0Y8W5,A0A0P0Y8V3 Q2QU88_ORYSJ,A0A0N7KTV3_ORYSJ,A0A0P0Y8W5_ORYSJ,A0A0P0Y8V3_ORYSJ Os12g0270300 LOC_Os12g17090 Os12g0270300 OSNPB_120270300,Os12g0273300 OSNPB_120273300,Os12g0270300 OSNPB_120270300,Os12g0271800 OSNPB_120271800 ENOG411EC59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 (CYP72C)-like (Cytochrome P450 monooxygenase) (Os01g0602400 protein),Os01g0628000 protein (Fragment),Cytochrome P450 (CYP72C)-like (Os01g0602500 protein) (cDNA clone:J013027D06, full insert sequence),Os01g0602200 protein (Fragment),Os01g0627600 protein (Fragment),Os01g0627933 protein,Os01g0627900 protein Q8S1C7,Q0JL28,Q5ZBB7,A0A0N7KDA0,A0A0P0V5G6,A0A0P0V5J0,A0A0P0V5H7 Q8S1C7_ORYSJ,Q0JL28_ORYSJ,Q5ZBB7_ORYSJ,A0A0N7KDA0_ORYSJ,A0A0P0V5G6_ORYSJ,A0A0P0V5J0_ORYSJ,A0A0P0V5H7_ORYSJ CYP72A32 Os01g0602400 B1085F01.11 OsJ_02503 OSNPB_010602400 P0518F01.33,Os01g0628000 Os01g0628000 OSNPB_010628000,Os01g0602500 B1085F01.12 OSNPB_010602500 P0518F01.34,Os01g0602200 OSNPB_010602200,Os01g0627600 OSNPB_010627600,Os01g0627933 OSNPB_010627933,Os01g0627900 OSNPB_010627900 ENOG411E96P MGN6.16 Q9FHZ8 Q9FHZ8_ARATH F-box protein, putative (DUF295) (Gb|AAC80597.1) 43153 F-box protein, putative (DUF295) (Gb|AAC80597.1) locus:2164057; AT5G53780 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E96R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat Os08g0325267 protein,Os08g0233400 protein (Fragment) A0A0P0XEL4,A0A0P0XDT1 A0A0P0XEL4_ORYSJ,A0A0P0XDT1_ORYSJ Os08g0325267 OSNPB_080325267,Os08g0233400 OSNPB_080233400 ENOG411E96T ARABIDOPSIS MYB-LIKE 2,MYBL2 Q9C9A5,A0A1P8AQS9 Q9C9A5_ARATH,A0A1P8AQS9_ARATH At1g71030/F23N20_2 (MYB transcription factor) (MYB-like 2) (Putative transcription factor) (Putative transcription factor; 20982-20139),MYB-like 2 22098,20588 At1g71030/F23N20_2 (MYB transcription factor) (MYB-like 2) (Putative transcription factor) (Putative transcription factor; 20982-20139),MYB-like 2 DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anthocyanin-containing compound biosynthetic process [GO:0009718]; proanthocyanidin biosynthetic process [GO:0010023]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651],DNA binding [GO:0003677] locus:2026306; AT1G71030 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E96U DI19-2 Q8GWK1,F4HXM2 DI192_ARATH,F4HXM2_ARATH Protein DEHYDRATION-INDUCED 19 homolog 2 (AtDi19-2),Drought-responsive family protein 25106,23223 Protein DEHYDRATION-INDUCED 19 homolog 2 (AtDi19-2),Drought-responsive family protein cytoplasm [GO:0005737]; nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16786289}. locus:2196125; AT1G02750 Pfam:Di19 NA NA NA NA NA NA NA ENOG411E96V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0316900 protein,Os05g0569900 protein (cDNA clone:J023030K16, full insert sequence),Os02g0633100 protein (Fragment),Os05g0569900 protein (Fragment) Q6Z849,Q6AUM9,A0A0N7KFR1,A0A0P0WR02 Q6Z849_ORYSJ,Q6AUM9_ORYSJ,A0A0N7KFR1_ORYSJ,A0A0P0WR02_ORYSJ P0572D06.30-1 Os02g0316900 OSNPB_020316900,Os05g0569900 OSJNBa0040E06.11 OSNPB_050569900,Os02g0633100 OSNPB_020633100,Os05g0569900 OSNPB_050569900 ENOG411E96X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E96Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411E96A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E96C CYCB1-2,CYCB1-5,CYCB1-3,CYCB1;5,CYC1BAT,CYCB1:3 Q39067,Q39072,Q39069,A0A1P8AM20,A0A1P8AM15,A0A1P8BGB9,A0A1P8AM26,A0A1I9LQ45 CCB12_ARATH,CCB15_ARATH,CCB13_ARATH,A0A1P8AM20_ARATH,A0A1P8AM15_ARATH,A0A1P8BGB9_ARATH,A0A1P8AM26_ARATH,A0A1I9LQ45_ARATH Cyclin-B1-2 (Cyc1b-At) (Cyclin-1b) (G2/mitotic-specific cyclin-B1-2) (CycB1;2),Cyclin-B1-5 (Cyc3-At) (G2/mitotic-specific cyclin-B1-5) (CycB1;5),Cyclin-B1-3 (Cyc2-At) (G2/mitotic-specific cyclin-B1-3) (CycB1;3),CYCLIN B15,Cyclin family protein,CYCLIN B13 FUNCTION: May induce mitotic cell division. {ECO:0000269|PubMed:11882294}. R-ATH-176408;R-ATH-2299718;R-ATH-2500257;R-ATH-4419969;R-ATH-6804114;R-ATH-69273;R-ATH-69478;R-ATH-75035; 49847,55430,46267,56385,55020,37854,53878,43542 Cyclin-B1-2 (Cyc1b-At) (Cyclin-1b) (G2/mitotic-specific cyclin-B1-2) (CycB1;2),Cyclin-B1-5 (Cyc3-At) (G2/mitotic-specific cyclin-B1-5) (CycB1;5),Cyclin-B1-3 (Cyc2-At) (G2/mitotic-specific cyclin-B1-3) (CycB1;3),CYCLIN B15,Cyclin family protein,CYCLIN B13 cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301]; response to gamma radiation [GO:0010332],cell cycle [GO:0007049]; cell division [GO:0051301],nucleus [GO:0005634]; cell cycle [GO:0007049]; cell division [GO:0051301],integral component of membrane [GO:0016021]; nucleus [GO:0005634] DEVELOPMENTAL STAGE: Expressed during G2/M and M phases. {ECO:0000269|PubMed:15970679}.,DEVELOPMENTAL STAGE: Starts to be expressed during the S phase, reaches a peak at mitosis and then decreases. {ECO:0000269|PubMed:8938409}.,DEVELOPMENTAL STAGE: Starts to be expressed at the end of S phase, reaches a peak at mitosis and then decreases. {ECO:0000269|PubMed:8938409}. TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9484485}. locus:2160722;,locus:2806635;,locus:2080717; AT5G06150,AT1G34460,AT3G11520 Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411E96D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E96E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E96H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxysterol-binding protein NA NA NA NA NA NA NA ENOG411E96I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E96J BGLU26 O64883 BGL26_ARATH Beta-glucosidase 26, peroxisomal (AtBGLU26) (EC 3.2.1.21) (Protein PENETRATION 2) permits efficient Blumeria graminis f. sp. hordei (Bgh) entry initiation of postinvasive fungal growth invariably ceases and this coincides with a cell death response of epidermal cells with haustorial complexes. Susceptible to fungal infection-P. Schulze-Lefert-2002 FUNCTION: Possesses beta-glucosidase activity toward 4-methyl-umbelliferyl-beta-D-glucoside in vitro. Possesses myrosinase activity toward indol-3-yl-methylglucosinolate (I3M) and 4-methoxy-indol-3-yl-methylglucosinolate (4MO-I3M) in vivo (PubMed:19095900). Component of an inducible preinvasion resistance mechanism that prevents penetration of the nonhost fungal species B.graminis and E.pisi (PubMed:16293760). Involved in indole glucosinolate (IGS) activation during pattern-triggered immunity (PTI). Functions as myrosinase for the breakdown of flg22-triggered IGS. Required for both callose deposition and glucosinolate activation during pathogen-triggered resistance (PubMed:19095898). During fungal attack, required for IGS activation that mediates broad-spectrum antifungal defense (PubMed:19095900). {ECO:0000269|PubMed:16293760, ECO:0000269|PubMed:19095898, ECO:0000269|PubMed:19095900}. MetaCyc:AT2G44490-MONOMER; R-ATH-189085; 3.2.1.21 63916 Beta-glucosidase 26, peroxisomal (AtBGLU26) (EC 3.2.1.21) (Protein PENETRATION 2) chloroplast envelope [GO:0009941]; membrane [GO:0016020]; peroxisome [GO:0005777]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; thioglucosidase activity [GO:0019137]; carbohydrate metabolic process [GO:0005975]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; defense response to fungus, incompatible interaction [GO:0009817]; glucosinolate metabolic process [GO:0019760]; indole glucosinolate catabolic process [GO:0042344]; induced systemic resistance [GO:0009682]; response to bacterium [GO:0009617] locus:2050544; AT2G44490 Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411E96K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411E96M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD NA NA NA NA NA NA NA ENOG411E96N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411E960 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase NA NA NA NA NA NA NA ENOG411E961 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rADc rRNA adenine N(6)-methyltransferase (EC 2.1.1.-) A0A0P0V2L0 A0A0P0V2L0_ORYSJ Os01g0362200 OSNPB_010362200 ENOG411E962 TET9 Q9M0B7 TET9_ARATH Tetraspanin-9 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 31064 Tetraspanin-9 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2118696; AT4G30430 Tetraspanin family NA NA NA NA NA NA NA ENOG411E963 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411E965 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411E966 Q3ECH7 Q3ECH7_ARATH Uncharacterized protein 32962 Uncharacterized protein locus:504956108; AT1G66245 NA NA NA NA NA NA NA NA ENOG411E967 CYCA1-2 Q9FVX0 CCA12_ARATH Cyclin-A1-2 (G2/mitotic-specific cyclin-A1-2) (CycA1;2) (Protein TARDY ASYNCHRONOUS MEIOSIS) Meiocytes produce unreduced gametes by undergoing meiosis I but skipping meiosis II. Abnormal pollen tetrad formation (no reduction in fertility); Delayed meiotic cell divisions-M. Yang-2004 FUNCTION: Involved in the regulation of male meiosis progression. {ECO:0000269|PubMed:15557098}. R-ATH-1538133;R-ATH-174184;R-ATH-5689880;R-ATH-5693607;R-ATH-68911;R-ATH-68949;R-ATH-69273;R-ATH-69656; 49637 Cyclin-A1-2 (G2/mitotic-specific cyclin-A1-2) (CycA1;2) (Protein TARDY ASYNCHRONOUS MEIOSIS) cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell division [GO:0051301]; male meiotic nuclear division [GO:0007140]; meiosis II [GO:0007135]; microsporogenesis [GO:0009556]; regulation of meiotic cell cycle [GO:0051445] DEVELOPMENTAL STAGE: Weakly expressed at zygotene, highly at pachitene and disappears from late diplotene to anaphase. Pronounced peak at the G1/S boundary but does not show mitotic expression. {ECO:0000269|PubMed:15557098, ECO:0000269|PubMed:15970679}. TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:15557098}. locus:2031407; AT1G77390 Cyclin C-terminal domain NA NA NA NA NA NA NA ENOG411E968 CYS7 Q8LC76 CYT7_ARATH Cysteine proteinase inhibitor 7 (AtCYS-7) FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. 26582 Cysteine proteinase inhibitor 7 (AtCYS-7) extracellular region [GO:0005576]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; protease binding [GO:0002020]; defense response [GO:0006952]; negative regulation of cysteine-type endopeptidase activity [GO:2000117] locus:2175294; AT5G05110 CY NA NA NA NA NA NA NA ENOG411E969 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amb_all NA NA NA NA NA NA NA ENOG411E4JX O80594 ERG28_ARATH Ergosterol biosynthetic protein 28 14804 Ergosterol biosynthetic protein 28 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein binding, bridging [GO:0030674]; ergosterol biosynthetic process [GO:0006696] locus:2201891; AT1G10030 ergosterol biosynthetic protein Erg28 like protein, expressed (Os12g0633200 protein) (cDNA clone:001-105-B02, full insert sequence) Q2QLQ4 Q2QLQ4_ORYSJ LOC_Os12g43670 Os12g0633200 OsJ_36981 OSNPB_120633200 ENOG411E4J7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) NA NA NA NA NA NA NA ENOG411E37T MUD21.10 Q9FKZ6 Q9FKZ6_ARATH SAP domain-containing protein 63204 SAP domain-containing protein locus:2174959; AT5G66840 NA Os07g0619700 protein A0A0N7KNV6 A0A0N7KNV6_ORYSJ Os07g0619700 OSNPB_070619700 ENOG411E37V Q67XV7,Q8LG32,A0A1P8AWJ7,F4HTE5 LOR3_ARATH,LOR2_ARATH,A0A1P8AWJ7_ARATH,F4HTE5_ARATH Protein LURP-one-related 3,Protein LURP-one-related 2,LURP-one-like protein,LURP-one-like protein (DUF567) FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 24904,25972,27620 Protein LURP-one-related 3,Protein LURP-one-related 2,LURP-one-like protein,LURP-one-like protein (DUF567) locus:2197036;,locus:2814874; AT1G53890,AT1G53870 cellular metabolic process Os07g0672600 protein Q8H463 Q8H463_ORYSJ P0470D12.133 Os07g0672600 OSNPB_070672600 ENOG411EA02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0336500 protein,Os08g0337001 protein A0A0P0XEV6,A0A0P0XEQ5 A0A0P0XEV6_ORYSJ,A0A0P0XEQ5_ORYSJ Os08g0336500 OSNPB_080336500,Os08g0337001 OSNPB_080337001 ENOG411EA00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial 2-oxoglutarate malate carrier Os05g0208000 protein (Putative 2-oxoglutarate/malate translocator) (cDNA clone:001-030-F09, full insert sequence) (cDNA clone:J023093C11, full insert sequence),2-oxoglutarate/malate translocator (Clone OMT103), mitochondrial membrane-proso millet (Mitochondrial carrier protein, expressed) (Os11g0432400 protein) (cDNA clone:001-016-G08, full insert sequence) (cDNA clone:J013132N13, full insert sequence),Os05g0208000 protein (Fragment) Q60EY9,Q53PA7,A0A0N7KKB7 Q60EY9_ORYSJ,Q53PA7_ORYSJ,A0A0N7KKB7_ORYSJ Os05g0208000 OJ1430_B02.7 OSNPB_050208000,LOC_Os11g24450 Os11g0432400 OsJ_33773 OSNPB_110432400,Os05g0208000 OSNPB_050208000 ENOG411E371 Q9FH13,A0A1P8BCQ5 RRAA3_ARATH,A0A1P8BCQ5_ARATH Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 (HMG aldolase 3) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.3) (Regulator of ribonuclease activity homolog 3) (RraA-like protein 3),4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.3) (EC 4.1.3.17) (Oxaloacetate decarboxylase) FUNCTION: Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2-oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2-oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. {ECO:0000256|RuleBase:RU004338}. 4.1.3.17; 4.1.1.3,4.1.1.3; 4.1.3.17 17567,21407 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 (HMG aldolase 3) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.3) (Regulator of ribonuclease activity homolog 3) (RraA-like protein 3),4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.3) (EC 4.1.3.17) (Oxaloacetate decarboxylase) 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [GO:0047443]; metal ion binding [GO:0046872]; oxaloacetate decarboxylase activity [GO:0008948]; ribonuclease inhibitor activity [GO:0008428]; regulation of RNA metabolic process [GO:0051252],4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [GO:0047443]; metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168]; oxaloacetate decarboxylase activity [GO:0008948]; ribonuclease inhibitor activity [GO:0008428]; regulation of RNA metabolic process [GO:0051252] locus:2156430; AT5G56260 regulator of ribonuclease-like protein NA NA NA NA NA NA NA ENOG411E373 SRO2 Q9ZUD9 SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 (Protein SIMILAR TO RCD ONE 2) FUNCTION: Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses. {ECO:0000250}. 35602 Probable inactive poly [ADP-ribose] polymerase SRO2 (Protein SIMILAR TO RCD ONE 2) nucleus [GO:0005634]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; multicellular organism development [GO:0007275] locus:2028879; AT1G23550 inactive poly ADP-ribose polymerase SRO2-like NA NA NA NA NA NA NA ENOG411E372 Q700D6,F4JVA4 Q700D6_ARATH,F4JVA4_ARATH At4g39160 (Homeodomain-like superfamily protein),Homeodomain-like superfamily protein 67315,69956 At4g39160 (Homeodomain-like superfamily protein),Homeodomain-like superfamily protein transcription factor TFIIIB complex [GO:0000126]; DNA binding [GO:0003677]; TFIIIB-type transcription factor activity [GO:0001026]; transcription from RNA polymerase III promoter [GO:0006383],transcription factor TFIIIB complex [GO:0000126]; DNA binding [GO:0003677]; TFIIIB-type transcription factor activity [GO:0001026]; TFIIIC-class transcription factor binding [GO:0001156]; RNA polymerase III transcriptional preinitiation complex assembly [GO:0070898] locus:2136393; AT4G39160 Inherit from KOG: B double prime 1 subunit of RNA polymerase III transcription initiation factor IIIB NA NA NA NA NA NA NA ENOG411E374 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Os05g0339200 protein (cDNA clone:002-174-G11, full insert sequence),Os08g0297650 protein Q5WMP1,Q69LB4 Q5WMP1_ORYSJ,Q69LB4_ORYSJ Os05g0339200 Os05g0339200 OSJNBa0053E01.14 OSNPB_050339200,Os08g0297650 P0024C06.126 OSJNBb0024C16.117 OSNPB_080297650 ENOG411EA0M Q1G363 Q1G363_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein 44462 Adenine nucleotide alpha hydrolases-like superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2149244; AT5G20310 Universal stress protein family NA NA NA NA NA NA NA ENOG411EK7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA NA NA NA NA NA NA NA ENOG411EK7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM2X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2R SCL28 Q1PDV2,A0A1P8BF01 SRC28_ARATH,A0A1P8BF01_ARATH Serine/arginine-rich SC35-like splicing factor SCL28 (At-SCL28) (AtSCL28) (28 kDa SC35-like splicing factor) (SC35-like splicing factor 28) (Serine/arginine-rich splicing factor 28),SC35-like splicing factor 28 FUNCTION: Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5' splice sites. {ECO:0000305}. 28028,27941 Serine/arginine-rich SC35-like splicing factor SCL28 (At-SCL28) (AtSCL28) (28 kDa SC35-like splicing factor) (SC35-like splicing factor 28) (Serine/arginine-rich splicing factor 28),SC35-like splicing factor 28 nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398],RNA binding [GO:0003723] locus:2144945; AT5G18810 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EMGY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox U-box domain-containing protein 12 (EC 2.3.2.27) (Plant U-box protein 12) (OsPUB12) (RING-type E3 ubiquitin transferase PUB12) Q5VRH9 PUB12_ORYSJ PUB12 Os06g0102700 LOC_Os06g01304 OSJNBa0075G19.19-1 FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. {ECO:0000269|PubMed:19825583}. ENOG411EMGX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipid-transporting ATPase Phospholipid-transporting ATPase (EC 3.6.3.1) (Fragment) Q0DLI5,A0A0P0WGS9 Q0DLI5_ORYSJ,A0A0P0WGS9_ORYSJ Os05g0100600 Os05g0100600 OSNPB_050100600,Os05g0100600 OSNPB_050100600 ENOG411EMGS ALA8 Q9LK90,A0A1I9LQR2,A0A1I9LQR1 ALA8_ARATH,A0A1I9LQR2_ARATH,A0A1I9LQR1_ARATH Probable phospholipid-transporting ATPase 8 (AtALA8) (EC 3.6.3.1) (Aminophospholipid flippase 8),Phospholipid-transporting ATPase (EC 3.6.3.1) FUNCTION: Involved in transport of phospholipids. {ECO:0000305|PubMed:11402198}. ARA:AT3G27870-MONOMER; R-ATH-6798695;R-ATH-936837; 3.6.3.1 135309,112530,113553 Probable phospholipid-transporting ATPase 8 (AtALA8) (EC 3.6.3.1) (Aminophospholipid flippase 8),Phospholipid-transporting ATPase (EC 3.6.3.1) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012]; Golgi vesicle budding [GO:0048194],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid-translocating ATPase activity [GO:0004012] locus:2086465; AT3G27870 phospholipid-transporting ATPase 8-like NA NA NA NA NA NA NA ENOG411EMGU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase Os08g0379200 protein (Fragment) Q0J612 Q0J612_ORYSJ Os08g0379200 Os08g0379200 OSNPB_080379200 ENOG411EMGJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme E2 NA NA NA NA NA NA NA ENOG411EMGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme Os05g0232500 protein (cDNA clone:J023019A14, full insert sequence) Q0DJS7 Q0DJS7_ORYSJ Os05g0232500 Os05g0232500 OSNPB_050232500 ENOG411EMGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING E3 ubiquitin-protein ligase BRE1-like 2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BRE1-like 2) Q336R3 BRE1B_ORYSJ BRE1B Os10g0565600 LOC_Os10g41590 OsJ_031219 OsJ_32496 OSJNBa0057L21 FUNCTION: E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. {ECO:0000250|UniProtKB:Q9C895}. ENOG411EMGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein arginine n-methyltransferase Protein arginine N-methyltransferase PRMT10 (EC 2.1.1.319) Q9SNQ2 ANM10_ORYSJ PRMT10 PRMT4.2 Os06g0142800 LOC_Os06g05090 OsJ_019280 P0535G04.29 FUNCTION: Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}. ENOG411EMG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L11 methyltransferase (PrmA) NA NA NA NA NA NA NA ENOG411EMG8 VTE3 Q9LY74 BQMT_ARATH 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic (EC 2.1.1.295) (37 kDa inner envelope membrane protein) (E37) (MPBQ/MSBQ methyltransferase) (Protein ALBINO OR PALE GREEN MUTANT 1) (Protein INNER ENVELOPE PROTEIN 37) (Protein VITAMIN E DEFECTIVE 3) DISRUPTION PHENOTYPE: Pale green seedlings that are lethal when grown on normal conditions. {ECO:0000269|PubMed:14508009}. Seedling lethal; Pale green-D. DellaPenna-2003 FUNCTION: Involved in a key methylation step in both tocopherols (vitamin E) and plastoquinone synthesis. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone (MPBQ) to 2,3-dimethyl-6-phytyl-1,4-hydroquinone (DMPQ, a substrate for tocopherol cyclase), and 2-methyl-6-solanyl-1,4-benzoquinone (MSBQ) to plastoquinone. {ECO:0000269|PubMed:14508009}. PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis. 2.1.1.295; 2.1.1.295 37927 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic (EC 2.1.1.295) (37 kDa inner envelope membrane protein) (E37) (MPBQ/MSBQ methyltransferase) (Protein ALBINO OR PALE GREEN MUTANT 1) (Protein INNER ENVELOPE PROTEIN 37) (Protein VITAMIN E DEFECTIVE 3) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity [GO:0102550]; 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity [GO:0051741]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; plastoquinone biosynthetic process [GO:0010236]; vitamin E biosynthetic process [GO:0010189] locus:2087393; AT3G63410 37 kDa inner envelope membrane protein 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic (EC 2.1.1.295) (37 kDa inner envelope membrane protein) (E37) (MPBQ/MSBQ methyltransferase) (Protein VTE3 homolog),2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic (EC 2.1.1.295) (37 kDa inner envelope membrane protein) (E37) (Arsenite methyltransferase 2) (OsArsM2) (MPBQ/MSBQ methyltransferase) (Protein VTE3 homolog) Q2QM69,Q6ZLD3 BQMT2_ORYSJ,BQMT1_ORYSJ Os12g0615400 LOC_Os12g42090 OsJ_36874,ARSM2 Os07g0179300 LOC_Os07g08200 OJ1014_E09.7 OJ1361_E02.125 FUNCTION: Involved in a key methylation step in both tocopherols (vitamin E) and plastoquinone synthesis. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone (MPBQ) to 2,3-dimethyl-6-phytyl-1,4-hydroquinone (DMPQ, a substrate for tocopherol cyclase), and 2-methyl-6-solanyl-1,4-benzoquinone (MSBQ) to plastoquinone (By similarity). {ECO:0000250}. ENOG411EMG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM NA NA NA NA NA NA NA ENOG411EMG1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM Os06g0237300 protein (Putative pollen-specific LIM domain protein) Q67VC7 Q67VC7_ORYSJ Os06g0237300 Os06g0237300 OSJNBa0068B06.6 OSNPB_060237300 ENOG411EMG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM LIM-domain protein (Os03g0266100 protein) (Pollen-specific protein SF3, putative, expressed) (Putative LIM-domain protein) (cDNA clone:001-016-G03, full insert sequence) Q84Q79 Q84Q79_ORYSJ Os03g0266100 LOC_Os03g15940 Os03g0266100 OJ1364E02.4 OsJ_10253 OSNPB_030266100 ENOG411EMG7 Q8GWG9,B3H4I3,A0A1P8B4I1,A0A1P8B4H2 Q8GWG9_ARATH,B3H4I3_ARATH,A0A1P8B4I1_ARATH,A0A1P8B4H2_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g17150/dl4610w),Alpha/beta-Hydrolases superfamily protein 56415,43232,45874,53456 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g17150/dl4610w),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2130604; AT4G17150 Inherit from euNOG: whole genome shotgun sequence Os06g0609700 protein (cDNA clone:J013098M22, full insert sequence),Os02g0197900 protein,Os02g0197900 protein (Fragment) Q69XI0,A0A0P0VG30,A0A0P0VG18 Q69XI0_ORYSJ,A0A0P0VG30_ORYSJ,A0A0P0VG18_ORYSJ Os06g0609700 Os06g0609700 OsJ_21943 OSNPB_060609700 P0490F09.8,Os02g0197900 OSNPB_020197900 ENOG411EMG6 HMT-1 Q9SDL7,F4JBA8,F4JBA7 HMT1_ARATH,F4JBA8_ARATH,F4JBA7_ARATH Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S-methylmethionine:homocysteine methyltransferase 1) (AtHMT-1) (SMM:Hcy S-methyltransferase 1),Homocysteine S-methyltransferase family protein FUNCTION: Catalyzes methyl transfer from S-methylmethionine (SMM) to adenosyl-L-homocysteine (AdoMet). SMM degradation (by HMT-1, HMT-2 and HMT-3) and biosynthesis (by MMT1) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level. ARA:AT3G25900-MONOMER; 2.1.1.10; 2.1.1.10 35980,29437,33739 Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S-methylmethionine:homocysteine methyltransferase 1) (AtHMT-1) (SMM:Hcy S-methyltransferase 1),Homocysteine S-methyltransferase family protein cytoplasm [GO:0005737]; betaine-homocysteine S-methyltransferase activity [GO:0047150]; S-adenosylmethionine-homocysteine S-methyltransferase activity [GO:0008898]; zinc ion binding [GO:0008270]; methionine biosynthetic process [GO:0009086],cytoplasm [GO:0005737]; betaine-homocysteine S-methyltransferase activity [GO:0047150]; zinc ion binding [GO:0008270]; methionine biosynthetic process [GO:0009086] TISSUE SPECIFICITY: Expressed predominantly in roots. Expressed in rosette leaves, cauline leaves and developing seeds. {ECO:0000269|PubMed:11309147}. locus:2092120; AT3G25900 Homocysteine s-methyltransferase Homocysteine S-methyltransferase 1, putative, expressed (Os03g0221200 protein) (cDNA clone:J013128N24, full insert sequence) Q10PU4 Q10PU4_ORYSJ LOC_Os03g12110 Os03g0221200 OSNPB_030221200 ENOG411EMG5 HMT-2,HMT3,HMT2 Q9M1W4,Q8LAX0,F4J0X9 HMT2_ARATH,HMT3_ARATH,F4J0X9_ARATH Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S-methylmethionine:homocysteine methyltransferase 2) (AtHMT-2) (SMM:Hcy S-methyltransferase 2),Homocysteine S-methyltransferase 3 (EC 2.1.1.10) (S-methylmethionine:homocysteine methyltransferase 3) (AtHMT-3) (SMM:Hcy S-methyltransferase 3),Homocysteine methyltransferase 2 Elevated methionine levels in seeds-G. Jander-2008 FUNCTION: Catalyzes methyl transfer from S-methylmethionine (SMM) to adenosyl-L-homocysteine (AdoMet). SMM degradation (by HMT-1, HMT-2 and HMT-3) and biosynthesis (by MMT1) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level. MISCELLANEOUS: In contrast to HMT-1, it is not inhibited by methionine. ARA:AT3G63250-MONOMER;,ARA:AT3G22740-MONOMER; 2.1.1.10; 2.1.1.10 36451,37882,32267 Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S-methylmethionine:homocysteine methyltransferase 2) (AtHMT-2) (SMM:Hcy S-methyltransferase 2),Homocysteine S-methyltransferase 3 (EC 2.1.1.10) (S-methylmethionine:homocysteine methyltransferase 3) (AtHMT-3) (SMM:Hcy S-methyltransferase 3),Homocysteine methyltransferase 2 cytoplasm [GO:0005737]; betaine-homocysteine S-methyltransferase activity [GO:0047150]; S-adenosylmethionine-homocysteine S-methyltransferase activity [GO:0008898]; zinc ion binding [GO:0008270]; methionine biosynthetic process [GO:0009086]; S-methylmethionine cycle [GO:0033528],cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; betaine-homocysteine S-methyltransferase activity [GO:0047150]; zinc ion binding [GO:0008270]; methionine biosynthetic process [GO:0009086],metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168] TISSUE SPECIFICITY: Expressed predominantly in roots. Expressed in rosette leaves, cauline leaves and developing seeds. {ECO:0000269|PubMed:11309147}.,TISSUE SPECIFICITY: Expressed predominantly in rosette leaves. Expressed in roots, cauline leaves and developing seeds. {ECO:0000269|PubMed:11309147}. locus:2077234;,locus:2094419; AT3G63250,AT3G22740 Homocysteine s-methyltransferase Homocysteine S-methyltransferase 3 (Homocysteine S-methyltransferase 3, putative, expressed) (Os12g0607000 protein),Homocysteine S-methyltransferase 2, putative, expressed (Os10g0422200 protein) (cDNA clone:001-123-H11, full insert sequence) (cDNA clone:J033080I03, full insert sequence) (cDNA clone:J033138N02, full insert sequence),Os01g0772900 protein (Putative homocysteine S-methyltransferase 4) (cDNA clone:001-116-A06, full insert sequence) (cDNA clone:J033030E05, full insert sequence),Homocysteine S-methyltransferase 3, putative, expressed (Os12g0607000 protein) (cDNA clone:J033125A08, full insert sequence) Q2QME6,Q7XEH2,Q5ZBZ6,Q2QME7 Q2QME6_ORYSJ,Q7XEH2_ORYSJ,Q5ZBZ6_ORYSJ,Q2QME7_ORYSJ LOC_Os12g41390 Os12g0607000 OsJ_36805 OSNPB_120607000,LOC_Os10g28630 Os10g0422200 OsJ_31561 OSNPB_100422200,Os01g0772900 OsJ_03627 OSNPB_010772900 P0490D09.5 P0695H10.27,Os12g0607000 LOC_Os12g41390 OSNPB_120607000 ENOG411EMG4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM NA NA NA NA NA NA NA ENOG411DUY8 F4IA60 F4IA60_ARATH Outer arm dynein light chain 1 protein 76551 Outer arm dynein light chain 1 protein vacuole [GO:0005773] locus:2032040; AT1G78230 leucine rich repeat domain containing protein Leucine-rich repeat family protein, putative, expressed (Os03g0190300 protein),Leucine Rich Repeat family protein, expressed (Os10g0376200 protein) (cDNA clone:J023045N14, full insert sequence) Q8H7M7,Q7XF95 Q8H7M7_ORYSJ,Q7XF95_ORYSJ OJ1217B09.19 Os03g0190300 LOC_Os03g09070 OSNPB_030190300,LOC_Os10g22980 Os10g0376200 OSJNBa0095C06.5 OSNPB_100376200 ENOG411E523 F4IC43 F4IC43_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 13909 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein locus:2201976; AT1G12100 14 kDa proline-rich protein DC2.15-like NA NA NA NA NA NA NA ENOG411DUY2 RVE3,RVE6,ASG4 Q6R0H0,Q8H0W3,A0A1P8AMB7,A0A1P8AMC4 RVE3_ARATH,RVE6_ARATH,A0A1P8AMB7_ARATH,A0A1P8AMC4_ARATH Protein REVEILLE 3 (Myb transcription factor LHY-CCA1-like3) (Myb-related protein ASG4) (Protein ALTERED SEED GERMINATION 4) (Transcription factor ASG4),Protein REVEILLE 6,Homeodomain-like superfamily protein FUNCTION: Probable transcription factor. {ECO:0000250}. 32795,36265,29502,32853 Protein REVEILLE 3 (Myb transcription factor LHY-CCA1-like3) (Myb-related protein ASG4) (Protein ALTERED SEED GERMINATION 4) (Transcription factor ASG4),Protein REVEILLE 6,Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of circadian rhythm [GO:0042752]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2025411;,locus:2149589; AT1G01520,AT5G52660 Transcription factor NA NA NA NA NA NA NA ENOG411DUY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Lipase SIL1-like protein (Os09g0247600 protein) (cDNA clone:002-124-G06, full insert sequence) Q6K4G2 Q6K4G2_ORYSJ Os09g0247600 Os09g0247600 OJ1451_A02.24 OSNPB_090247600 P0499G10.5 ENOG411DUY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif Os01g0743100 protein A0A0P0V864 A0A0P0V864_ORYSJ Os01g0743100 OSNPB_010743100 ENOG411E52D RBG6,RBG3 Q9FZ84,Q9FNR1,Q6ID29,A0A1P8B8Z9 RBG6_ARATH,RBG3_ARATH,Q6ID29_ARATH,A0A1P8B8Z9_ARATH Glycine-rich RNA-binding protein 6, mitochondrial (AtGR-RBP6) (AtRBG6),Glycine-rich RNA-binding protein 3, mitochondrial (AtGR-RBP3) (AtRBG3) (Mitochondrial RNA-binding protein 2a) (At-mRBP2a) (Organelle RRM domain-containing protein 3),At4g13860 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit severe editing defects in mitochondrial transcripts. {ECO:0000269|PubMed:25800738}. FUNCTION: Possibly has a role in RNA transcription or processing during stress. {ECO:0000250}.,FUNCTION: Possibly has a role in RNA transcription or processing during stress (By similarity). Involved in C-to-U editing of mitochondrial RNA. Functions as minor mitochondrial editing factor. Controls 6 percent of the mitochondrial editing sites (PubMed:25800738). {ECO:0000250|UniProtKB:Q9LIS2, ECO:0000269|PubMed:25800738}. R-ATH-72163; 15960,29985,9533,7710 Glycine-rich RNA-binding protein 6, mitochondrial (AtGR-RBP6) (AtRBG6),Glycine-rich RNA-binding protein 3, mitochondrial (AtGR-RBP3) (AtRBG3) (Mitochondrial RNA-binding protein 2a) (At-mRBP2a) (Organelle RRM domain-containing protein 3),At4g13860 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]; RNA binding [GO:0003723]; response to salt stress [GO:0009651],mitochondrion [GO:0005739]; ATP binding [GO:0005524]; copper ion binding [GO:0005507]; RNA binding [GO:0003723]; single-stranded DNA binding [GO:0003697]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397]; response to cold [GO:0009409],RNA binding [GO:0003723] locus:2027438;,locus:2159401;,locus:2119505; AT1G18630,AT5G61030,AT4G13860 Glycine-rich RNA-binding protein Os12g0502200 protein (RNA recognition motif family protein, expressed) (cDNA clone:J013000N14, full insert sequence) (cDNA clone:J023146P18, full insert sequence),Os07g0602600 protein Q2QQ97,Q0D4V3 Q2QQ97_ORYSJ,Q0D4V3_ORYSJ Os12g0502200 LOC_Os12g31800 Os12g0502200 OsJ_36195 OSNPB_120502200,Os07g0602600 Os07g0602600 OsJ_25023 OSNPB_070602600 ENOG411E52I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH NA NA NA NA NA NA NA ENOG411E52K MHK10.3 Q9SLC8,Q8L3S7 Q9SLC8_ARATH,Q8L3S7_ARATH ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein (Uncharacterized protein At2g42310),ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein (Expressed protein) ARA:AT2G42310-MONOMER;MetaCyc:AT2G42310-MONOMER;,ARA:AT3G57785-MONOMER;MetaCyc:AT3G57785-MONOMER; 12632,12662 ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein (Uncharacterized protein At2g42310),ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein (Expressed protein) mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739] locus:2053824;,locus:505006403; AT2G42310,AT3G57785 NA Os03g0677250 protein,Os09g0487500 protein (cDNA clone:002-139-D10, full insert sequence),Os08g0505001 protein A3ALD2,Q0J0R1,A0A0P0XHI9 A3ALD2_ORYSJ,Q0J0R1_ORYSJ,A0A0P0XHI9_ORYSJ Os03g0677250 OsJ_12092 OSNPB_030677250,Os09g0487500 Os09g0487500 OSNPB_090487500,Os08g0505001 OSNPB_080505001 ENOG411E52M ERF008,RAP2-9 O22174,Q8W3M3 ERF08_ARATH,RAP29_ARATH Ethylene-responsive transcription factor ERF008,Ethylene-responsive transcription factor RAP2-9 (Protein RELATED TO APETALA2 9) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 19120,17199 Ethylene-responsive transcription factor ERF008,Ethylene-responsive transcription factor RAP2-9 (Protein RELATED TO APETALA2 9) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2058641;,locus:1005716457; AT2G23340,AT4G06746 Transcription factor NA NA NA NA NA NA NA ENOG411E52N MLP34 F4I6Y7 F4I6Y7_ARATH MLP-like protein 34 26242 MLP-like protein 34 defense response [GO:0006952]; response to biotic stimulus [GO:0009607] AT1G70850 MLP-like protein NA NA NA NA NA NA NA ENOG411E52U MED32 Q84VW5 MED32_ARATH Mediator of RNA polymerase II transcription subunit 32 (Mediator of RNA polymerase II transcription subunit 2) FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors. {ECO:0000305|PubMed:17560376, ECO:0000305|PubMed:22021418}. 16013 Mediator of RNA polymerase II transcription subunit 32 (Mediator of RNA polymerase II transcription subunit 2) mediator complex [GO:0016592]; cold acclimation [GO:0009631]; leaf senescence [GO:0010150]; regulation of transcription, DNA-templated [GO:0006355]; response to hydrogen peroxide [GO:0042542]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] locus:2027377; AT1G11760 NA Os10g0548400 protein (Fragment) A0A0P0XXB5 A0A0P0XXB5_ORYSJ Os10g0548400 OSNPB_100548400 ENOG411E52W EPFL9 Q9SV72 EPFL9_ARATH EPIDERMAL PATTERNING FACTOR-like protein 9 (EPF-like protein 9) [Cleaved into: Stomagen] DISRUPTION PHENOTYPE: Reduced stomatal densities in various organs. {ECO:0000269|PubMed:20010603}. FUNCTION: Stomagen: Positively regulates stomatal density and patterning. Acts by competing with EPF2 (AC Q8LC53) for the same receptors, ERECTA (AC Q42371) and TMM (AC Q9SSD1). Not cleaved by the protease CRSP (AC Q9LNU1) (PubMed:25043023). {ECO:0000269|PubMed:20007289, ECO:0000269|PubMed:20010603, ECO:0000269|PubMed:22027592, ECO:0000269|PubMed:25043023, ECO:0000269|PubMed:26083750}. 11840 EPIDERMAL PATTERNING FACTOR-like protein 9 (EPF-like protein 9) [Cleaved into: Stomagen] apoplast [GO:0048046]; protein kinase binding [GO:0019901]; cell-cell signaling [GO:0007267]; guard cell differentiation [GO:0010052]; positive regulation of stomatal complex development [GO:2000123]; regulation of stomatal complex development [GO:2000038]; stomatal complex development [GO:0010374]; stomatal complex patterning [GO:0010375] TISSUE SPECIFICITY: Expressed in immature organs, including leaves, stems and flower buds, but not in roots, shoot apical meristem and petals. Detected in the mesophyll tissues but not in the epidermal tissues where stomata develop. {ECO:0000269|PubMed:20007289, ECO:0000269|PubMed:20010603}. locus:2123261; AT4G12970 NA Os01g0914400 protein (cDNA clone:001-111-G05, full insert sequence) Q5N810 Q5N810_ORYSJ Os01g0914400 Os01g0914400 OsJ_04524 OSNPB_010914400 P0004D12.8 ENOG411E52Z Q3EBB9 Q3EBB9_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 20969 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family locus:504955821; AT3G05975 Harpin-induced protein 1 containing protein expressed Harpin-induced protein 1 containing protein, expressed (Os12g0119800 protein) (cDNA clone:006-212-E05, full insert sequence) (cDNA clone:006-307-F04, full insert sequence),Harpin-induced protein 1 containing protein, expressed (Os11g0120100 protein) (cDNA clone:J033064O15, full insert sequence) Q2QYH1,Q2RB97 Q2QYH1_ORYSJ,Q2RB97_ORYSJ Os12g0119800 LOC_Os12g02700 OsJ_35032 OSNPB_120119800,Os11g0120100 LOC_Os11g02730 OsJ_32749 OSNPB_110120100 ENOG411EM20 MJH23.3 Q9LHL2,Q8W4A6,A0A1I9LTC4 Q9LHL2_ARATH,Q8W4A6_ARATH,A0A1I9LTC4_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At3g13224),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein MJH23.3),RNA-binding (RRM/RBD/RNP motifs) family protein 37864,26140,37189 RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At3g13224),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein MJH23.3),RNA-binding (RRM/RBD/RNP motifs) family protein mRNA binding [GO:0003729],integral component of membrane [GO:0016021]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:504955752; AT3G13224 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os08g0320100 protein (RNA recognition motif (RRM)-containing protein-like) (cDNA clone:J033097J11, full insert sequence),Os08g0320100 protein (Fragment) Q6Z0P6,A0A0P0XE67 Q6Z0P6_ORYSJ,A0A0P0XE67_ORYSJ OJ1136_D12.118 P0465H09.135 Os08g0320100 OSNPB_080320100,Os08g0320100 OSNPB_080320100 ENOG411EM23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DUYW F4HYH6,F4HYH7 F4HYH6_ARATH,F4HYH7_ARATH Vacuolar protein sorting-associated protein 26 36055,35679 Vacuolar protein sorting-associated protein 26 endosome [GO:0005768]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886] locus:2198075; AT1G48550 vacuolar protein sorting-associated protein 26 NA NA NA NA NA NA NA ENOG411DUYU Q9SH87 Q9SH87_ARATH Chaperone protein dnaJ-like protein (Uncharacterized protein At2g38000) 46243 Chaperone protein dnaJ-like protein (Uncharacterized protein At2g38000) heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] locus:2065696; AT2G38000 Inherit from KOG: ssu-2 homolog (C. elegans) Os05g0316200 protein (cDNA clone:J033060I06, full insert sequence),Os05g0316200 protein Q5W6X4,A0A0P0WKK8 Q5W6X4_ORYSJ,A0A0P0WKK8_ORYSJ Os05g0316200 OSJNBa0065C11.2 OSNPB_050316200,Os05g0316200 OSNPB_050316200 ENOG411DUYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HisKA NA NA NA NA NA NA NA ENOG411DUYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-Box protein Os01g0814700 protein (cDNA clone:J013153I12, full insert sequence),Os01g0814400 protein (Fragment) Q5N762,A0A0P0V9R2,A0A0P0V9N4,A0A0P0V9N0 Q5N762_ORYSJ,A0A0P0V9R2_ORYSJ,A0A0P0V9N4_ORYSJ,A0A0P0V9N0_ORYSJ Os01g0814700 OSJNBa0085D07.29 OSNPB_010814700,Os01g0814400 OSNPB_010814400 ENOG411DUYQ PGA3 P49062 PGLR1_ARATH Exopolygalacturonase clone GBGE184 (ExoPG) (EC 3.2.1.67) (Galacturan 1,4-alpha-galacturonidase) (Pectinase) FUNCTION: May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase. ARA:AT1G02790-MONOMER; 3.2.1.67 44430 Exopolygalacturonase clone GBGE184 (ExoPG) (EC 3.2.1.67) (Galacturan 1,4-alpha-galacturonidase) (Pectinase) cell wall [GO:0005618]; extracellular region [GO:0005576]; galacturan 1,4-alpha-galacturonidase activity [GO:0047911]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2024680; AT1G02790 pga4 pga4 (polygalacturonase 4) NA NA NA NA NA NA NA ENOG411DUYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peptidylprolyl NA NA NA NA NA NA NA ENOG411DUYB SCY2 F4IQV7 SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic (Protein EMBRYO DEFECTIVE 2289) DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:21051552}. Embryo defective; Globular-D. Meinke-2002 FUNCTION: Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity). {ECO:0000250, ECO:0000269|PubMed:21051552}. MISCELLANEOUS: Cannot substitute for SCY1. 64711 Preprotein translocase subunit SCY2, chloroplastic (Protein EMBRYO DEFECTIVE 2289) amyloplast membrane [GO:0033097]; chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastid envelope [GO:0009526]; protein transport [GO:0015031] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:21051552}. locus:2065868; AT2G31530 pre-protein translocase Os05g0397700 protein Q0DIE1 Q0DIE1_ORYSJ Os05g0397700 Os05g0397700 OsJ_18458 OSNPB_050397700 ENOG411DUYC DRG2,DRG1 Q9CAI1,Q9LQK0,A0A1P8AMQ3 DRG2_ARATH,DRG1_ARATH,A0A1P8AMQ3_ARATH Developmentally-regulated G-protein 2 (AtDRG2) (Developmentally-regulated G-protein 2B) (AtDRG2b),Developmentally-regulated G-protein 1 (AtDRG1) (Developmentally-regulated G-protein 2A) (AtDRG2a),p-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Binds GDP and GTP, and has low GTPase activity. {ECO:0000269|PubMed:19460440}.,FUNCTION: Binds GDP and GTP, and has low GTPase activity. May interact with phosphatidic acid (PA). {ECO:0000269|PubMed:19460440}. 44803,44639,36182 Developmentally-regulated G-protein 2 (AtDRG2) (Developmentally-regulated G-protein 2B) (AtDRG2b),Developmentally-regulated G-protein 1 (AtDRG1) (Developmentally-regulated G-protein 2A) (AtDRG2a),p-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; GDP binding [GO:0019003]; GTP binding [GO:0005525]; GTPase activity [GO:0003924],cytoplasmic vesicle [GO:0031410]; GDP binding [GO:0019003]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; phosphatidic acid binding [GO:0070300],GTP binding [GO:0005525]; hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in actively growing tissues and reproductive organs. Mostly expressed in leaves, stems and siliques. Also present in flowers and flower buds, and, to a lower extent, in roots. {ECO:0000269|PubMed:10080710, ECO:0000269|PubMed:10380799}. locus:2030240;,locus:2018826; AT1G72660,AT1G17470 developmentally regulated Os05g0357600 protein (Putative GTP binding protein) (cDNA clone:001-116-H10, full insert sequence) (cDNA clone:J013037H01, full insert sequence),Os05g0357600 protein (Fragment) Q5W796,A0A0P0WL98 Q5W796_ORYSJ,A0A0P0WL98_ORYSJ Os05g0357600 OJ1045_C06.7 OsJ_18209 OSNPB_050357600,Os05g0357600 OSNPB_050357600 ENOG411EHED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARF-like GTPase NA NA NA NA NA NA NA ENOG411EHEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3223) NA NA NA NA NA NA NA ENOG411EHEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0464300 protein,Os02g0580966 protein Q0JCK6,A0A0P0VKU8 Q0JCK6_ORYSJ,A0A0P0VKU8_ORYSJ Os04g0464300 Os04g0464300 OSNPB_040464300,Os02g0580966 OSNPB_020580966 ENOG411EHEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EHE5 Q8L9Z1,Q8LCX3,Q1G3B9,F4IBZ9 Q8L9Z1_ARATH,Q8LCX3_ARATH,Q1G3B9_ARATH,F4IBZ9_ARATH Transmembrane protein,Uncharacterized protein 7827,7668,6543,7284 Transmembrane protein,Uncharacterized protein integral component of membrane [GO:0016021] locus:1006230016;,locus:1006230764;,locus:4010713662;,locus:4515102501; AT2G31345,AT1G06135,AT2G31335,AT1G06137 NA NA NA NA NA NA NA NA ENOG411EHE6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: ring finger protein 138 E3 ubiquitin protein ligase NA NA NA NA NA NA NA ENOG411EHE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1499) NA NA NA NA NA NA NA ENOG411DRNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pumilio-family RNA binding repeat Os04g0201200 protein A0A0P0W7A7 A0A0P0W7A7_ORYSJ Os04g0201200 OSNPB_040201200 ENOG411DRNT CNBT1 A0A1I9LNZ4 A0A1I9LNZ4_ARATH Cyclic nucleotide-binding transporter 1 77365 Cyclic nucleotide-binding transporter 1 integral component of membrane [GO:0016021]; ion channel activity [GO:0005216] cyclic nucleotide-gated ion channel 20 NA NA NA NA NA NA NA ENOG411DRNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Potassium transporter 24 (OsHAK24),Potassium transporter 25 (OsHAK25),Os02g0730300 protein (Fragment),Potassium transporter Q5Z6K9,Q6YWQ4,A0A0P0VP43,A0A0P0WV22 HAK24_ORYSJ,HAK25_ORYSJ,A0A0P0VP43_ORYSJ,A0A0P0WV22_ORYSJ HAK24 Os06g0270200 LOC_Os06g15910 OSJNBa0084K06.26,HAK25 Os02g0730300 LOC_Os02g49760 OSJNBa0072H09.37 P0617A09.16,Os02g0730300 OSNPB_020730300,Os06g0270200 OSNPB_060270200 FUNCTION: High-affinity potassium transporter. {ECO:0000250}.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. ENOG411DRNR F4IKR5 F4IKR5_ARATH DNAJ heat shock N-terminal domain-containing protein 67091 DNAJ heat shock N-terminal domain-containing protein locus:2062450; AT2G35540 DNAJ heat shock N-terminal domain-containing protein DnaJ protein-like (Os06g0111700 protein),Os12g0564750 protein (Fragment) Q5VRZ9,A0A0P0YCF5 Q5VRZ9_ORYSJ,A0A0P0YCF5_ORYSJ Os06g0111700 Os06g0111700 OsJ_19866 OSNPB_060111700 P0029D06.16,Os12g0564750 OSNPB_120564750 ENOG411DRNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity Probable glucuronosyltransferase Os04g0103100 (EC 2.4.-.-) Q7XTB2 GT41_ORYSJ Os04g0103100 LOC_Os04g01280 OsJ_13499 OSJNBa0068L06.11 OSJNBa0094O15.1 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411E1MY NDL1,NDL3,NDL2 Q9FJT7,Q9ZUN1,A0A1P8AYR3,A0A1P8BGH7,A0A1P8BB26 Q9FJT7_ARATH,Q9ZUN1_ARATH,A0A1P8AYR3_ARATH,A0A1P8BGH7_ARATH,A0A1P8BB26_ARATH AT5g56750/MIK19_22 (N-MYC downregulated-like 1) (Pollen specific protein SF21),N-MYC downregulated-like 3 (Putative SF21 protein (Helianthus annuus)),N-MYC downregulated-like 3,N-MYC downregulated-like 2,N-MYC downregulated-like 1 FUNCTION: Interacts with the heterotrimeric G protein beta subunit GB1 and plays an significant role in GB1-dependent regulation of lateral root formation. Involved in a signaling pathway that modulates root auxin transport and auxin gradients. Acts partially by positively regulating the auxin carrier PIN2 and AUX1 (PubMed:19948787). Acts, together with GB1 as positive regulator of meristem initiation and branching. GB1 and NDL1 positively regulate basipetal inflorescence auxin transport and modulate MAX2 expression in shoots, which regulates organ and lateral meristem formation by the establishment and maintenance of auxin gradients (PubMed:24223735). {ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:24223735}.,FUNCTION: Involved in a signaling pathway that modulates root auxin transport and auxin gradients. Acts partially by positively regulating the auxin carrier PIN2 and AUX1 (PubMed:19948787). Acts, together with GB1 as positive regulator of meristem initiation and branching. GB1 and NDL3 positively regulate basipetal inflorescence auxin transport and modulate MAX2 expression in shoots, which regulates organ and lateral meristem formation by the establishment and maintenance of auxin gradients (PubMed:24223735). {ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:24223735}. 38299,38702,32891,32524,36415 AT5g56750/MIK19_22 (N-MYC downregulated-like 1) (Pollen specific protein SF21),N-MYC downregulated-like 3 (Putative SF21 protein (Helianthus annuus)),N-MYC downregulated-like 3,N-MYC downregulated-like 2,N-MYC downregulated-like 1 integral component of membrane [GO:0016021]; auxin transport [GO:0060918],integral component of membrane [GO:0016021] locus:2165101;,locus:2050404; AT5G56750,AT2G19620 Ndr family Os01g0192600 protein (Putative pollen specific protein SF21) (cDNA clone:J023117I22, full insert sequence),Os06g0563000 protein (Putative SF21C1 protein) (cDNA clone:J013068F20, full insert sequence),Os05g0196200 protein (Putative pollen specific protein SF21) (cDNA, clone: J065009N02, full insert sequence),Os02g0224800 protein (Putative pollen specific protein) (cDNA clone:J013056E08, full insert sequence),Os02g0224800 protein (Fragment) Q5SNH3,Q5Z901,Q53WJ4,Q6Z8B1,A0A0N7KEY7 Q5SNH3_ORYSJ,Q5Z901_ORYSJ,Q53WJ4_ORYSJ,Q6Z8B1_ORYSJ,A0A0N7KEY7_ORYSJ Os01g0192600 OSNPB_010192600 P0671B11.24,Os06g0563000 Os06g0563000 OSNPB_060563000 P0656E03.22,Os05g0196200 OsJ_17443 OSNPB_050196200 P0617H07.5,Os02g0224800 Os02g0224800 OsJ_05946 OSNPB_020224800 P0470A03.25 P0495C02.3,Os02g0224800 OSNPB_020224800 ENOG411E1MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase Os06g0260500 protein (Fragment) A0A0P0WUT4 A0A0P0WUT4_ORYSJ Os06g0260500 OSNPB_060260500 ENOG411E1MZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Os05g0413000 protein (cDNA clone:001-013-C06, full insert sequence) Q6AUB3 Q6AUB3_ORYSJ Os05g0413000 Os05g0413000 OSNPB_050413000 P0017D10.8 ENOG411E1MQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF642) NA NA NA NA NA NA NA ENOG411E1MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:C4dic_mal_tran C4-dicarboxylate transporter-like protein (Os01g0385400 protein),Os05g0219900 protein,Os02g0530100 protein (Fragment) Q8L4G8,Q75G55,A0A0P0VJT1 Q8L4G8_ORYSJ,Q75G55_ORYSJ,A0A0P0VJT1_ORYSJ Os01g0385400 OsJ_01883 OSJNBb0093M23.26 OSNPB_010385400 P0676G08.5,Os05g0219900 Os05g0219900 B1003C08.2 OsJ_17580 OSNPB_050219900,Os02g0530100 OSNPB_020530100 ENOG411E1MR F11F8_15 Q9SF45 Q9SF45_ARATH FAD/NAD(P)-binding oxidoreductase family protein (Putative oxidoreductase) 52259 FAD/NAD(P)-binding oxidoreductase family protein (Putative oxidoreductase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; oxidoreductase activity [GO:0016491] locus:2075029; AT3G09580 Amine oxidase family protein Os07g0626800 protein (Fragment) Q0D4G9 Q0D4G9_ORYSJ Os07g0626800 Os07g0626800 OSNPB_070626800 ENOG411E1MU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BAG domain Os06g0126500 protein Q0DF00 Q0DF00_ORYSJ Os06g0126500 Os06g0126500 OSNPB_060126500 ENOG411E1MT YUC3 O23024 YUC3_ARATH Probable indole-3-pyruvate monooxygenase YUCCA3 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA3) FUNCTION: Involved in auxin biosynthesis. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in roots. {ECO:0000269|PubMed:22025721}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. 1.14.13.168 48747 Probable indole-3-pyruvate monooxygenase YUCCA3 (EC 1.14.13.168) (Flavin-containing monooxygenase YUCCA3) flavin adenine dinucleotide binding [GO:0050660]; indole-3-pyruvate monooxygenase activity [GO:0103075]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; auxin biosynthetic process [GO:0009851] locus:2197863; AT1G04610 flavin-containing monooxygenase NA NA NA NA NA NA NA ENOG411E1MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP synthase (E/31 kDa) subunit Os01g0222500 protein (Putative vacuolar V-H+ATPase subunit E) (cDNA clone:J023139P14, full insert sequence) Q5NB63 Q5NB63_ORYSJ Os01g0222500 Os01g0222500 OSNPB_010222500 P0443E05.13 ENOG411E1MV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec23/Sec24 beta-sandwich domain NA NA NA NA NA NA NA ENOG411E1MI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family GCN5-related N-acetyltransferase-like (Os02g0180400 protein) Q6H820 Q6H820_ORYSJ OJ1297_C09.4 Os02g0180400 OSNPB_020180400 ENOG411E1MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q942B6 Q942B6_ORYSJ Os01g0736100 Os01g0736100 B1060H01.39 OsJ_34661 OSNPB_010736100 ENOG411E1MK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain BHLH transcription factor (Os08g0483900 protein) (Putative basic-helix-loop-helix (BHLH)transcription factor) (cDNA clone:002-131-D10, full insert sequence) Q6YTU1 Q6YTU1_ORYSJ Os08g0483900 OJ1111_H02.23 OSNPB_080483900 P0419H09.4 ENOG411E1MM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0447500 protein (Fragment) A0A0P0XGM0 A0A0P0XGM0_ORYSJ Os08g0447500 OSNPB_080447500 ENOG411E1MA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mps one binder kinase activator-like Mps one binder kinase activator-like 1A, putative, expressed (Os10g0396300 protein) (cDNA clone:J013041G09, full insert sequence) Q109Q4 Q109Q4_ORYSJ LOC_Os10g25674 Os10g0396300 OsJ_31422 OSNPB_100396300 ENOG411E1MB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os05g0455400 protein (Fragment) A0A0P0WN34 A0A0P0WN34_ORYSJ Os05g0455400 OSNPB_050455400 ENOG411E1MD CML48 Q9ZQH1,A0A1P8B254 CML48_ARATH,A0A1P8B254_ARATH Probable calcium-binding protein CML48 (Calmodulin-like protein 48),Calcium-binding EF-hand family protein FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-1474228;R-ATH-418359;R-ATH-425561;R-ATH-5578775;R-ATH-6798695;R-ATH-936837; 26130,21377 Probable calcium-binding protein CML48 (Calmodulin-like protein 48),Calcium-binding EF-hand family protein calcium ion binding [GO:0005509] locus:2038653; AT2G27480 calcium-binding protein Os08g0558100 protein (Putative fiber protein Fb1) (cDNA clone:J013022O12, full insert sequence) Q6YZJ1 Q6YZJ1_ORYSJ Os08g0558100 Os08g0558100 OJ1150_A11.32 OsJ_28265 OSNPB_080558100 P0562A06.1 ENOG411E1MG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA xyloglucan endotransglycosylase hydrolase protein NA NA NA NA NA NA NA ENOG411E1M9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear export mediator factor NA NA NA NA NA NA NA ENOG411E1M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os05g0553400 protein (Putative Myb-related transcription factor) (Putative myb transctiption factor) Q6I634 Q6I634_ORYSJ Os05g0553400 OJ1263_E10.3 OsJ_19477 OSJNBa0079H23.21 OSNPB_050553400 ENOG411E1M1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response regulator NA NA NA NA NA NA NA ENOG411E1M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Expressed protein (Os10g0542700 protein) Q7XCK8 Q7XCK8_ORYSJ OSJNBb0015I11.12 LOC_Os10g39660 Os10g0542700 OSNPB_100542700 ENOG411E1M4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Os01g0842200 protein (SCARECROW-like protein),Os01g0842200 protein Q5N9X3,A0A0P0VA78 Q5N9X3_ORYSJ,A0A0P0VA78_ORYSJ Os01g0842200 OSNPB_010842200 P0406G08.8,Os01g0842200 OSNPB_010842200 ENOG411EJN3 Q3EBJ8 FB128_ARATH Putative F-box protein At2g39415 13331 Putative F-box protein At2g39415 locus:1006230006; AT2G39415 NA NA NA NA NA NA NA NA ENOG411EJN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6K5 T02O04.18 O04324 O04324_ARATH At3g16330 (Avr9/Cf-9 rapidly elicited protein) (T02O04.18 protein) (Uncharacterized protein At3g16330/MYA6_13) 22856 At3g16330 (Avr9/Cf-9 rapidly elicited protein) (T02O04.18 protein) (Uncharacterized protein At3g16330/MYA6_13) locus:2094932; AT3G16330 Inherit from NOG: Avr9 Cf-9 rapidly elicited protein 146 NA NA NA NA NA NA NA ENOG411EJN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NA NA NA NA NA NA NA ENOG411EJNP Q9FWX9 Q9FWX9_ARATH T14P4.13 protein 33803 T14P4.13 protein locus:2196100; AT1G02540 NA NA NA NA NA NA NA NA ENOG411EJNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYTE iqd9 Q0WNP8 Q0WNP8_ARATH IQ-domain 9 (Putative SF16 protein (Helianthus annuus)) 30142 IQ-domain 9 (Putative SF16 protein (Helianthus annuus)) plasma membrane [GO:0005886] locus:2055430; AT2G33990 IQ-domain Os06g0155300 protein (SF16 protein-like) (cDNA clone:J013023F20, full insert sequence),Os06g0155300 protein (Fragment) Q5VMB6,A0A0P0WT68 Q5VMB6_ORYSJ,A0A0P0WT68_ORYSJ Os06g0155300 Os06g0155300 OsJ_20175 OSJNBa0085L11.25 OSNPB_060155300 P0046E09.3,Os06g0155300 OSNPB_060155300 ENOG411DYTD PPD2 Q8VY52 PPD2_ARATH PsbP domain-containing protein 2, chloroplastic (PsbP-related thylakoid lumenal protein 3) 25801 PsbP domain-containing protein 2, chloroplastic (PsbP-related thylakoid lumenal protein 3) chloroplast [GO:0009507]; chloroplast thylakoid lumen [GO:0009543]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; thylakoid [GO:0009579]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2828415; AT2G28605 psbP domain-containing protein 2 Os04g0434900 protein (Fragment) A0A0P0WAQ1 A0A0P0WAQ1_ORYSJ Os04g0434900 OSNPB_040434900 ENOG411DYTG ARAD1,ARAD2 Q6DBG8,Q9FLA5,A0A1P8BEB5 ARAD1_ARATH,ARAD2_ARATH,A0A1P8BEB5_ARATH Probable arabinosyltransferase ARAD1 (EC 2.4.2.-) (Arabinan alpha-1,5-arabinosyltransferase) (L-Arabinosyltransferase) (Protein ARABINAN DEFICIENT 1),Probable arabinosyltransferase ARAD2 (EC 2.4.2.-) (Arabinan alpha-1,5-arabinosyltransferase) (L-Arabinosyltransferase) (Protein ARABINAN DEFICIENT 2),Exostosin family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have strong reduction of arabinose content in leaves and stems due to a decreased content of pectic arabinan. {ECO:0000269|PubMed:16377743}. Cell wall composition was altered in mutant plants. Analysis of cell wall polysaccharides isolated from mutant leaves and stems showed that arabinose content was reduced to about 75% and 46% respectively of wild-type levels. Immunohistochemical analysis indicated a specific decrease in arabinan with no change in other pectic domains or in glycoproteins. Radial cell expansion of the stem tissue was increased in mutant plants but the cellular structure of the stem was also not altered. No other visible phenotypic changes were detected in the mutant plants. Abnormal cell wall composition; Low arabinose levels-H. Scheller-2006 FUNCTION: Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan. May function as inverting enzyme using UDP-beta-L-arabinopyranoside. May be important for arabinan side chains of rhamnogalacturonan I (RG-I), a major component of pectins. Cell wall pectic arabinans are involved in thigmomorphogenesis response of inflorescence stems to mechanical stress. {ECO:0000269|PubMed:16377743, ECO:0000269|PubMed:22270560, ECO:0000269|PubMed:23695504}.,FUNCTION: Probable arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan. May function as inverting enzyme using UDP-beta-L-arabinopyranoside. Cell wall pectic arabinans are involved in thigmomorphogenesis response of inflorescence stems to mechanical stress. {ECO:0000269|PubMed:22270560, ECO:0000269|PubMed:23695504}. 2.4.2.- 50782,50997,44085 Probable arabinosyltransferase ARAD1 (EC 2.4.2.-) (Arabinan alpha-1,5-arabinosyltransferase) (L-Arabinosyltransferase) (Protein ARABINAN DEFICIENT 1),Probable arabinosyltransferase ARAD2 (EC 2.4.2.-) (Arabinan alpha-1,5-arabinosyltransferase) (L-Arabinosyltransferase) (Protein ARABINAN DEFICIENT 2),Exostosin family protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; arabinan biosynthetic process [GO:0035884]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in root vasculature, cotyledons, leaves, stems, vascular tissue of sepals, petals and stamens, pollen grains, mature siliques and abscission region of seeds. {ECO:0000269|PubMed:16377743}. locus:2063494;,locus:2155302; AT2G35100,AT5G44930 Exostosin family Os07g0567000 protein A0A0P0X7X1 A0A0P0X7X1_ORYSJ Os07g0567000 OSNPB_070567000 ENOG411DYTF A1A6N0,C0Z252,A0A1I9LQK1,A0A1I9LQJ9,A0A1I9LQK2,F4J0R5 A1A6N0_ARATH,C0Z252_ARATH,A0A1I9LQK1_ARATH,A0A1I9LQJ9_ARATH,A0A1I9LQK2_ARATH,F4J0R5_ARATH At3g56720 (Pre-mRNA-splicing factor),AT3G56720 protein (Pre-mRNA-splicing factor),Pre-mRNA-splicing factor 43996,51115,33162,33233,41467,44067 At3g56720 (Pre-mRNA-splicing factor),AT3G56720 protein (Pre-mRNA-splicing factor),Pre-mRNA-splicing factor integral component of membrane [GO:0016021] locus:2103595; AT3G56720 NA Os10g0487900 protein (Fragment) Q0IWU2 Q0IWU2_ORYSJ Os10g0487900 OSNPB_100487900 ENOG411DYTA PNSL3 Q9SGH4 PNSL3_ARATH Photosynthetic NDH subunit of lumenal location 3, chloroplastic (PsbQ-like protein 2) DISRUPTION PHENOTYPE: Impaired chloroplastic NAD(P)H dehydrogenase (NDH) activity leading to the loss of post-illumination increases in Chl fluorescence, probably due to a reduced stability of the NDH complex. {ECO:0000269|PubMed:20430763, ECO:0000269|PubMed:20460499}. Mutant plant Does Not show the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness.,Mutant plants showed the post illumination increase in Chl fluorescence due to the loss of NDH-mediated reduction of the plastoquinone pool in darkness. Decreased post-illumination chlorophyll fluorescence-F. Sato-2010 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (Probable). Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex (PubMed:20430763, PubMed:20460499). {ECO:0000269|PubMed:20430763, ECO:0000269|PubMed:20460499, ECO:0000305}. 24781 Photosynthetic NDH subunit of lumenal location 3, chloroplastic (PsbQ-like protein 2) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; extrinsic component of membrane [GO:0019898]; nitrite reductase complex [NAD(P)H] [GO:0009344]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; photosynthesis, light reaction [GO:0019684]; photosynthetic electron transport chain [GO:0009767]; transport [GO:0006810] locus:2096707; AT3G01440 enhancer protein Os07g0105600 protein (PsbQ domain protein family, putative-like protein) (cDNA clone:J013148M09, full insert sequence) Q8L472 Q8L472_ORYSJ P0617C02.114 B1317D11.109 P0446F04.140 Os07g0105600 OSNPB_070105600 ENOG411DYTC UMAMIT32 Q9LI65,A0A1I9LMY6 WTR24_ARATH,A0A1I9LMY6_ARATH WAT1-related protein At3g30340,WAT1-related protein 40373,31674 WAT1-related protein At3g30340,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2102881; AT3G30340 auxin-induced protein WAT1-related protein,Os04g0457300 protein Q6ZFJ6,Q0JD84,Q5VRN3,A0A0N7KJ60,A0A0P0VDM6 Q6ZFJ6_ORYSJ,Q0JD84_ORYSJ,Q5VRN3_ORYSJ,A0A0N7KJ60_ORYSJ,A0A0P0VDM6_ORYSJ Os02g0103600 Os02g0103600 OJ1435_F07.30 OsJ_05009 OSNPB_020103600,Os04g0422300 Os04g0422300 OsJ_14803 OSNPB_040422300,Os06g0109200 Os06g0109200 OSJNBa0004I20.6 OSNPB_060109200 P0514G12.30,Os04g0457300 OSNPB_040457300,Os02g0103500 OSNPB_020103500 ENOG411DYTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN NA NA NA NA NA NA NA ENOG411DYTM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Cell division control protein 2(CCD2)-related protein kinase-like (Os01g0575400 protein),Os09g0376200 protein Q8S0C5,A0A0P0XMC1 Q8S0C5_ORYSJ,A0A0P0XMC1_ORYSJ B1112D09.8 Os01g0575400 OSNPB_010575400,Os09g0376200 OSNPB_090376200 ENOG411DYTN KIN8B Q9SCJ4 KN8B_ARATH Kinesin-like protein KIN-8B ARA:GQT-775-MONOMER; R-ATH-6811434;R-ATH-983189; 91051 Kinesin-like protein KIN-8B kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule depolymerization [GO:0007019]; microtubule-based movement [GO:0007018]; mitotic sister chromatid segregation [GO:0000070] locus:2114728; AT3G49650 kinesin-like protein Kinesin-like protein KIN-8B Q10E64 KN8B_ORYSJ KIN8B Os03g0773600 LOC_Os03g56260 OsJ_12760 OSJNBb0094O03.14 ENOG411DYTI ALA3 Q9XIE6 ALA3_ARATH Phospholipid-transporting ATPase 3 (AtALA3) (EC 3.6.3.1) (Aminophospholipid ATPase 3) (Aminophospholipid flippase 3) (Protein IRREGULAR TRICHOME BRANCH 2) DISRUPTION PHENOTYPE: Impaired growth of roots and shoots (PubMed:18344284, PubMed:23667493). Roots devoided of the characteristic trans-Golgi proliferation of slime vesicles containing polysaccharides and enzymes for secretion (PubMed:18344284). Aberrant trichome expansion, reduced primary root growth and longer root hairs (PubMed:19566596). Impaired pollen growth (PubMed:19566596, PubMed:23667493). Impaired ovule development (PubMed:23667493). Reduced adaptability to temperature stresses (PubMed:23667493). {ECO:0000269|PubMed:18344284, ECO:0000269|PubMed:19566596, ECO:0000269|PubMed:23667493}. Male gametophyte defective; Homozygotes are viable: Short primary root; Long root hairs; Altered trichome branching-D. Oppenheimer-2009 FUNCTION: Involved in transport of phospholipids. Contributes to transmembrane flipping of lipids. Required for secretory processes during plant development. Requires an interaction with an ALIS protein for activity. Has activity with phosphatidylserine, phosphatidylcholine and phosphatidylethanolamine, but not with lysolipid (PubMed:18344284, PubMed:19566596, PubMed:20053675). Modifies endomembranes in multiple cell types, enabling structural changes, or signaling functions that are critical for normal development and adaptation to varied growth environments (PubMed:23667493). {ECO:0000269|PubMed:18344284, ECO:0000269|PubMed:19566596, ECO:0000269|PubMed:20053675, ECO:0000269|PubMed:23667493}. MISCELLANEOUS: The intracellular targeting signals and lipid specificity determinants reside in the catalytic ALA subunit. {ECO:0000269|PubMed:20053675}. ARA:AT1G59820-MONOMER; R-ATH-6798695;R-ATH-936837; 3.6.99.B1; 3.6.3.1 137753 Phospholipid-transporting ATPase 3 (AtALA3) (EC 3.6.3.1) (Aminophospholipid ATPase 3) (Aminophospholipid flippase 3) (Protein IRREGULAR TRICHOME BRANCH 2) endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phospholipid transporter activity [GO:0005548]; phospholipid-translocating ATPase activity [GO:0004012]; Golgi vesicle budding [GO:0048194]; root development [GO:0048364]; shoot system development [GO:0048367] TISSUE SPECIFICITY: Expressed in petals and sepals, but not in reproductive tissues. In siliques, detected in the upper part of the seed pod and in the area between the seed pod and the stem, but not in developing seeds. Strong expression in vascular shoot tissues and in stomatal guard cells of young rosettes leaves. In roots, expressed in cells surrounding the xylem and in central and peripheral columella cells. Detected in developing and mature trichomes, roots, pollen and growing pollen tubes. {ECO:0000269|PubMed:18344284, ECO:0000269|PubMed:19566596}. locus:2025961; AT1G59820 Inherit from KOG: ATPase class Phospholipid-transporting ATPase (EC 3.6.3.1) (Fragment),Os10g0412000 protein (Fragment),Os10g0412050 protein Q0IXR5,A0A0P0XUU2,A0A0P0XV18 Q0IXR5_ORYSJ,A0A0P0XUU2_ORYSJ,A0A0P0XV18_ORYSJ Os10g0412000 OSNPB_100412000,Os10g0412050 OSNPB_100412050 ENOG411DYTH CID9,CID8 Q9LRR6,Q9C8M0 CID9_ARATH,CID8_ARATH Polyadenylate-binding protein-interacting protein 9 (PABP-interacting protein 9) (Poly(A)-binding protein-interacting protein 9) (PAM2-containing protein CID9) (Protein CTC-INTERACTING DOMAIN 9),Polyadenylate-binding protein-interacting protein 8 (PABP-interacting protein 8) (Poly(A)-binding protein-interacting protein 8) (PAM2-containing protein CID8) (Protein CTC-INTERACTING DOMAIN 8) 36546,34682 Polyadenylate-binding protein-interacting protein 9 (PABP-interacting protein 9) (Poly(A)-binding protein-interacting protein 9) (PAM2-containing protein CID9) (Protein CTC-INTERACTING DOMAIN 9),Polyadenylate-binding protein-interacting protein 8 (PABP-interacting protein 8) (Poly(A)-binding protein-interacting protein 8) (PAM2-containing protein CID8) (Protein CTC-INTERACTING DOMAIN 8) nucleus [GO:0005634]; RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in cauline leaves, stems, rosette leaves, immature siliques and primary inflorescences but at a low level. {ECO:0000269|PubMed:15650869}. locus:2091657;,locus:2024842; AT3G14450,AT1G53650 Ataxin-2 C-terminal region NA NA NA NA NA NA NA ENOG411DYTK ROH1 Q9CAK4 Q9CAK4_ARATH At1g63930 (From the Czech 'roh' meaning 'corner) (Uncharacterized protein At1g63930) (Uncharacterized protein T12P18.5) 45637 At1g63930 (From the Czech 'roh' meaning 'corner) (Uncharacterized protein At1g63930) (Uncharacterized protein T12P18.5) mucilage biosynthetic process involved in seed coat development [GO:0048354]; seed coat development [GO:0010214] locus:2195513; AT1G63930 Protein of unknown function (DUF793) NA NA NA NA NA NA NA ENOG411DYTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411DYTU Q9LYJ5,A0A1P8BDY0 Q9LYJ5_ARATH,A0A1P8BDY0_ARATH Pectin lyase-like superfamily protein (Polygalacturonase-like protein),Pectin lyase-like superfamily protein ARA:AT5G14650-MONOMER; 46481,33656 Pectin lyase-like superfamily protein (Polygalacturonase-like protein),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2222657; AT5G14650 polygalacturonase NA NA NA NA NA NA NA ENOG411DYTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DYTW BHLH23,BHLH119,BHLH127,BHLH56,MEE8,PIF1,PIL5 Q9SVU6,Q8GT73,Q7XHI7,Q9SVU7,Q9FRI0,Q8GZM7,A0A1P8B5X9,A0A1P8AYE4,A0A1P8B4H3,A0A1P8B7L8 BH023_ARATH,BH119_ARATH,BH127_ARATH,BH056_ARATH,MEE8_ARATH,PIF1_ARATH,A0A1P8B5X9_ARATH,A0A1P8AYE4_ARATH,A0A1P8B4H3_ARATH,A0A1P8B7L8_ARATH Transcription factor bHLH23 (Basic helix-loop-helix protein 23) (AtbHLH23) (bHLH 23) (Transcription factor EN 107) (bHLH transcription factor bHLH023),Transcription factor bHLH119 (Basic helix-loop-helix protein 119) (AtbHLH119) (bHLH 119) (Transcription factor EN 104) (bHLH transcription factor bHLH119),Transcription factor bHLH127 (Basic helix-loop-helix protein 127) (AtbHLH127) (bHLH 127) (bHLH transcription factor bHLH127),Putative transcription factor bHLH056 (Basic helix-loop-helix protein 56) (AtbHLH56) (bHLH 56) (Transcription factor EN 106) (bHLH transcription factor bHLH056),Transcription factor MEE8 (Basic helix-loop-helix protein 108) (AtbHLH108) (bHLH 108) (Protein MATERNAL EFFECT EMBRYO ARREST 8) (Transcription factor EN 132) (bHLH transcription factor bHLH108),Transcription factor PIF1 (Basic helix-loop-helix protein 15) (AtbHLH15) (bHLH 15) (Protein PHY-INTERACTING FACTOR 1) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) (Transcription factor EN 101) (bHLH transcription factor bHLH015),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein,Phytochrome interacting factor 3-like 5 DISRUPTION PHENOTYPE: Plants overaccumulate free protochlorophyllide in the darkness and exhibit photooxidative damage (bleaching) in subsequent light, probably caused by the photosensitizing activity of this tetrapyrrole intermediate. {ECO:0000269|PubMed:15448264, ECO:0000269|PubMed:18591656}. Germinates even without the activation of phytochromes. Exhibits disrupted shoot negative gravitropism.,Increased bioactive GA levels.,Mutant seeds germinated irrespective of red or far-red light irradiation while wild-type seeds (Col-0) germinated only when PHYB was activated by the red light pulse. However treatment with paclobutrazol (inhibitor of GA biosynthesis) blocked germination of both pil5 mutant seeds and WT seeds even under continuous white light irradiation.,The ABA levels in the mutant seeds were as low as those seen in red light-irradiated wild-type seeds irrespective of light conditions.,When treated with a short pulse of far-red light after seed surface sterilization mutant seeds germinated while majority of wild-type seeds did not. When wild-type seedlings were grown in the dark the majority of their hypocotyls were oriented in an upward direction. However when grown under red or far-red light the majority of the WT seedlings grew flat on the agar plates. Compared with wild-type seedlings higher percentages of pil5 mutant seedlings grew flat in the dark i.e. inhibition of hypocotyl negative gravitropism was observed in the dark in the pil5 mutant.,Irrespective of the light conditions a reduction of the expression levels of two DELLA genes GAI and RGA was measured in this double mutant.,The double mutant germinates almost 100% in response to even 5 μMGA3 irrespective of light conditions.,When treated with a short pulse of far-red light after seed surface sterilization only half of the double mutant seeds germinated while majority of wild-type seeds did not.,When grown under red light double mutants had a short hypocotyl length similar to that of the pif3 single mutant whereas the pil5 pif3 double mutant grown under far-red light had short hypocotyl length similar to that of the pil5 single mutant. Compared with wild-type seedlings higher percentages of double mutant seedlings grew flat in the dark i.e. inhibition of hypocotyl negative gravitropism was observed in the dark in the double mutant (similar to pil5 single mutant).,When treated with a short pulse of far-red light after seed surface sterilization double mutant seeds germinated while majority of wild-type seeds did not. Short hypocotyl under far-red light; Abnormal hypocotyl gravicurvature under red and far-red light-G. Choi-2004 FUNCTION: Required during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.,FUNCTION: Transcription activator. Regulates negatively chlorophyll biosynthesis and seed germination in the dark, and lightinduced degradation of PIF1 relieves this negative regulation to promote photomorphogenesis. Binds to the G-box motif (5'-CACGTG-3') found in many light-regulated promoters. Promotes the expression of SOM, and thus modulates responses to abscisic acid (ABA) and gibberellic acid (GA). {ECO:0000269|PubMed:15448264, ECO:0000269|PubMed:16359394, ECO:0000269|PubMed:18487351, ECO:0000269|PubMed:18539749, ECO:0000269|PubMed:18591656}. 46070,59686,34589,49286,17020,52864,32956,37909,26141,50034 Transcription factor bHLH23 (Basic helix-loop-helix protein 23) (AtbHLH23) (bHLH 23) (Transcription factor EN 107) (bHLH transcription factor bHLH023),Transcription factor bHLH119 (Basic helix-loop-helix protein 119) (AtbHLH119) (bHLH 119) (Transcription factor EN 104) (bHLH transcription factor bHLH119),Transcription factor bHLH127 (Basic helix-loop-helix protein 127) (AtbHLH127) (bHLH 127) (bHLH transcription factor bHLH127),Putative transcription factor bHLH056 (Basic helix-loop-helix protein 56) (AtbHLH56) (bHLH 56) (Transcription factor EN 106) (bHLH transcription factor bHLH056),Transcription factor MEE8 (Basic helix-loop-helix protein 108) (AtbHLH108) (bHLH 108) (Protein MATERNAL EFFECT EMBRYO ARREST 8) (Transcription factor EN 132) (bHLH transcription factor bHLH108),Transcription factor PIF1 (Basic helix-loop-helix protein 15) (AtbHLH15) (bHLH 15) (Protein PHY-INTERACTING FACTOR 1) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) (Transcription factor EN 101) (bHLH transcription factor bHLH015),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein,Phytochrome interacting factor 3-like 5 nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; embryo development ending in seed dormancy [GO:0009793]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; phytochrome binding [GO:0010313]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; chlorophyll biosynthetic process [GO:0015995]; gibberellic acid mediated signaling pathway [GO:0009740]; heme biosynthetic process [GO:0006783]; negative gravitropism [GO:0009959]; negative regulation of photomorphogenesis [GO:0010100]; negative regulation of seed germination [GO:0010187]; red light signaling pathway [GO:0010161]; regulation of photomorphogenesis [GO:0010099]; regulation of seed germination [GO:0010029]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677],protein dimerization activity [GO:0046983],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2117773;,locus:4010713915;,locus:4010713916;,locus:2117788;,locus:2033015;,locus:2061634; AT4G28790,AT4G28811,AT4G28815,AT4G28800,AT1G25310,AT2G20180 transcription factor NA NA NA NA NA NA NA ENOG411DYTV PIN2,EIR1 Q9LU77,A0A1P8BDV9 PIN2_ARATH,A0A1P8BDV9_ARATH Auxin efflux carrier component 2 (AtPIN2) (Auxin efflux carrier AGR) (Ethylene-insensitive root 1) (AtEIR1) (Polar-auxin-transport efflux component AGR1) (Protein AGRAVITROPIC 1) (AtAGR1) (Protein WAVY 6),Auxin efflux carrier component DISRUPTION PHENOTYPE: Loss-of-function mutations impair the root gravitropic response, lead to an increased sensitivity to ethylene and auxin transport inhibitors, and give rise to an auxin accumulation in root tips. {ECO:0000269|PubMed:9679062, ECO:0000269|PubMed:9844024}. Abnormal root and hypocotyl gravicurvature-P. Masson-1998 FUNCTION: Acts as a component of the auxin efflux carrier. Seems to be involved in the root-specific auxin transport, and mediates the root gravitropism. Its particular localization suggest a role in the translocation of auxin towards the elongation zone. {ECO:0000269|PubMed:20439545}.,FUNCTION: May act as a component of the auxin efflux carrier. {ECO:0000256|RuleBase:RU362108}. 69331,58006 Auxin efflux carrier component 2 (AtPIN2) (Auxin efflux carrier AGR) (Ethylene-insensitive root 1) (AtEIR1) (Polar-auxin-transport efflux component AGR1) (Protein AGRAVITROPIC 1) (AtAGR1) (Protein WAVY 6),Auxin efflux carrier component auxin efflux carrier complex [GO:0009921]; basal plasma membrane [GO:0009925]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; lytic vacuole [GO:0000323]; plasma membrane [GO:0005886]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin homeostasis [GO:0010252]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; positive gravitropism [GO:0009958]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to glucose [GO:0009749],integral component of membrane [GO:0016021]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin-activated signaling pathway [GO:0009734] TISSUE SPECIFICITY: Root-specific. Localized to the cortex, epidermis and lateral root cap, predominantly at the upper side of cells. locus:2175559; AT5G57090 auxin efflux Auxin efflux carrier component 2 (OsPIN2) Q651V6 PIN2_ORYSJ PIN2 Os06g0660200 LOC_Os06g44970 OSJNBa0051O02.21 FUNCTION: Acts as a component of the auxin efflux carrier. Involved in the basipetal polar auxin transport which contributes to the spreading growth of the tillers. {ECO:0000269|PubMed:21777365}. MISCELLANEOUS: Plants over-expressing PIN2 exhibit reduced height, increased tiller number and enlarged tiller angle. {ECO:0000269|PubMed:21777365}. ENOG411DYTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: BTB (POZ) domain-containing protein Os07g0123500 protein (PRLI-interacting factor G-like protein) (cDNA, clone: J065118J05, full insert sequence) Q6Z4R8 Q6Z4R8_ORYSJ Os07g0123500 Os07g0123500 OsJ_22937 OSJNBa0057M23.136 OSNPB_070123500 ENOG411DYTP PER42 Q9SB81 PER42_ARATH Peroxidase 42 (Atperox P42) (EC 1.11.1.7) (ATP1a/ATP1b) (PRXR1) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.; FUNCTION: Might function as heat shock-like defense protein. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G21960-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37295 Peroxidase 42 (Atperox P42) (EC 1.11.1.7) (ATP1a/ATP1b) (PRXR1) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979]; rhythmic process [GO:0048511] TISSUE SPECIFICITY: Constitutively expressed in the whole plant, with the highest expression in roots. {ECO:0000269|Ref.9}. locus:2141637; AT4G21960 peroxidase NA NA NA NA NA NA NA ENOG411DYTS Q8LAF4 Q8LAF4_ARATH Nucleoporin protein Ndc1-Nup protein 57420 Nucleoporin protein Ndc1-Nup protein integral component of membrane [GO:0016021]; nuclear pore transmembrane ring [GO:0070762]; structural constituent of nuclear pore [GO:0017056]; nuclear pore organization [GO:0006999] locus:2197274; AT1G73240 Nucleoporin protein Ndc1-Nup Os02g0684300 protein (Fragment) A0A0N7KFW1 A0A0N7KFW1_ORYSJ Os02g0684300 OSNPB_020684300 ENOG411DYTR F4JRJ6 DEAH9_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 (EC 3.6.4.13) (DEAH RNA helicase homolog DDX35) FUNCTION: May be involved in pre-mRNA splicing. {ECO:0000305}. 3.6.4.13 77715 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 (EC 3.6.4.13) (DEAH RNA helicase homolog DDX35) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasmodesma [GO:0009506]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA processing [GO:0006396]; RNA splicing [GO:0008380] locus:505006494; AT4G18465 RNA helicase Os01g0212100 protein (Putative DEAH (Asp-Glu-Ala-His) box polypeptide 35) (cDNA clone:J033040B09, full insert sequence),Os01g0212100 protein Q5QNI3,A0A0P0UZK1 Q5QNI3_ORYSJ,A0A0P0UZK1_ORYSJ P0031E09.39-1 Os01g0212100 OsJ_00855 OSNPB_010212100,Os01g0212100 OSNPB_010212100 ENOG411DYTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA amino acid Amino acid transporter, putative, expressed (Os12g0181500 protein) (cDNA clone:001-207-B07, full insert sequence) (cDNA clone:006-307-E03, full insert sequence) (cDNA clone:J023073O03, full insert sequence),Amino acid carrier, putative, expressed (Os11g0195600 protein) (Transmembrane amino acid transporter protein) (cDNA clone:001-035-E06, full insert sequence) (cDNA clone:J013129H02, full insert sequence),Amino acid transporter, putative, expressed (Os12g0181600 protein) (cDNA clone:001-202-G09, full insert sequence) (cDNA clone:006-308-D07, full insert sequence),Os01g0617650 protein (Fragment),Os09g0427300 protein (Fragment),Os02g0695500 protein,Os08g0415900 protein,Os12g0195100 protein Q2QWV5,Q53LH2,Q2QWV1,A0A0P0V5A3,A0A0P0XMQ1,A0A0P0VNH3,A0A0P0XFV0,A0A0N7KTQ0 Q2QWV5_ORYSJ,Q53LH2_ORYSJ,Q2QWV1_ORYSJ,A0A0P0V5A3_ORYSJ,A0A0P0XMQ1_ORYSJ,A0A0P0VNH3_ORYSJ,A0A0P0XFV0_ORYSJ,A0A0N7KTQ0_ORYSJ Os12g0181500 LOC_Os12g08090 Os12g0181500 OsJ_35437 OSNPB_120181500,Os11g0195600 LOC_Os11g09020 Os11g0195600 OSNPB_110195600,Os12g0181600 LOC_Os12g08130 Os12g0181600 OSNPB_120181600,Os01g0617650 OSNPB_010617650,Os09g0427300 OSNPB_090427300,Os02g0695500 OSNPB_020695500,Os08g0415900 OSNPB_080415900,Os12g0195100 OSNPB_120195100 ENOG411DYTX RPL10 Q9FY50 RK10_ARATH 50S ribosomal protein L10, chloroplastic (CL10) Embryo defective; Preglobular / Globular-D. Meinke-2011 FUNCTION: This protein binds directly to 23S ribosomal RNA. {ECO:0000250}. 24736 50S ribosomal protein L10, chloroplastic (CL10) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; large ribosomal subunit [GO:0015934]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412] locus:2185051; AT5G13510 Ribosomal protein L10 Os03g0284400 protein (Ribosomal protein L10 containing protein, expressed) (cDNA clone:J023009H08, full insert sequence) Q10N30 Q10N30_ORYSJ LOC_Os03g17580 Os03g0284400 OsJ_10397 OSNPB_030284400 ENOG411DYTZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein NA NA NA NA NA NA NA ENOG411DYT5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 OSJNBa0088I22.11 protein (Os04g0570800 protein) (cDNA clone:J023031N01, full insert sequence),Dehydration-responsive family protein-like (Os02g0675700 protein) Q7XU42,Q6EP94 Q7XU42_ORYSJ,Q6EP94_ORYSJ Os04g0570800 Os04g0570800 OSJNBa0088I22.11 OSNPB_040570800,Os02g0675700 OsJ_07909 OSNPB_020675700 P0135D07.12 ENOG411DYT4 OFP14 Q9S7T5 OFP14_ARATH Transcription repressor OFP14 (Ovate family protein 14) (AtOFP14) FUNCTION: Transcriptional repressor that may regulate multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP14 have no visible phenotype. {ECO:0000305|PubMed:21886836}. 34357 Transcription repressor OFP14 (Ovate family protein 14) (AtOFP14) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, shoots, stems, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2016344; AT1G79960 Pfam:DUF623 Os01g0592800 protein Q94JB6 Q94JB6_ORYSJ Os01g0592800 OsJ_02438 OSNPB_010592800 P0710A02.27 ENOG411DYT7 CYP75B1 Q9SD85 F3PH_ARATH Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Cytochrome P450 75B1) (Flavonoid 3'-hydroxylase) (AtF3'H) (Protein TRANSPARENT TESTA 7) Yellow seed coat-B. Weisshaar-2000 FUNCTION: Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state. Convert naringenin to eriodictyol and dihydrokaempferol to dihydroquercetin. MISCELLANEOUS: May act as a membrane anchor for localization of other, soluble, flavonoid enzymes to the endoplasmic reticulum. PATHWAY: Secondary metabolite biosynthesis; flavonoid biosynthesis. 1.14.13.21; Biosynthesis of secondary metabolites (01110),Flavonoid biosynthesis (00941),Flavone and flavonol biosynthesis (00944),Metabolic pathways (01100) 1.14.13.21 56787 Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Cytochrome P450 75B1) (Flavonoid 3'-hydroxylase) (AtF3'H) (Protein TRANSPARENT TESTA 7) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; flavonoid 3'-monooxygenase activity [GO:0016711]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; flavonoid biosynthetic process [GO:0009813]; response to auxin [GO:0009733]; secondary metabolite biosynthetic process [GO:0044550] TISSUE SPECIFICITY: High expression in siliques and to a lower extent in stems, flowers and senescing leaves. locus:2142878; AT5G07990 flavonoid Flavonoid 3'-monooxygenase CYP75B3 (EC 1.14.13.21) (Cytochrome P450 75B3) (Flavonoid 3'-hydroxylase) (OsF3'H),Flavonoid 3'-monooxygenase CYP75B4 (EC 1.14.13.21) (Chrysoeriol 5'-hydroxylase) (Cytochrome P450 75B4) (Flavonoid 3'-hydroxylase CYP75B4),Os10g0317900 protein (Fragment) Q7G602,Q8LM92,A0A0P0XSK8 C75B3_ORYSJ,C75B4_ORYSJ,A0A0P0XSK8_ORYSJ CYP75B3 F3'H Os10g0320100 LOC_Os10g17260 OsJ_31048 OSJNAa0053D03.2 OSJNBa0053D03.12,CYP75B4 Os10g0317900 LOC_Os10g16974 OSJNBb0079E01.10,Os10g0317900 OSNPB_100317900 FUNCTION: Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state (PubMed:18726614). Catalyzes the 3'-hydroxylation of apigenin to generate luteolin (Probable). {ECO:0000269|PubMed:18726614, ECO:0000305|PubMed:26082402}.,FUNCTION: Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state. Catalyzes in vitro 3'-hydroxylation of different flavonoids. Catalyzes the conversion of apigenin to luteolin, naringenin to eriodictyol, and kaempferol to quercetin. Possesses specific 5'-hydroxylase activity toward chrysoeriol (a 3'-methoxylated flavone) and is indispensable for tricin formation. Converts chrysoeriol to selgin, a precursor of tricin, suggesting that chrysoeriol, instead of tricetin, is an intermediate in tricin biosynthesis. {ECO:0000269|PubMed:26082402}. ENOG411DYT6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os04g0571200 protein (cDNA clone:J023097G23, full insert sequence) B7EJC9 B7EJC9_ORYSJ Os04g0571200 OSNPB_040571200 ENOG411DYT1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0684900 protein,Os01g0240800 protein A0A0P0X0M4,A0A0P0V091 A0A0P0X0M4_ORYSJ,A0A0P0V091_ORYSJ Os06g0684900 OSNPB_060684900,Os01g0240800 OSNPB_010240800 ENOG411DYT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os06g0492900 protein,Os06g0492800 protein Q0DC30,A0A0P0WX61 Q0DC30_ORYSJ,A0A0P0WX61_ORYSJ Os06g0492900 Os06g0492900 OsJ_21418 OSNPB_060492900,Os06g0492800 OSNPB_060492800 ENOG411DYT3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein Os02g0232300 protein A0A0P0VGT2 A0A0P0VGT2_ORYSJ Os02g0232300 OSNPB_020232300 ENOG411DYT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 OSJNBa0061C06.7 protein (Os04g0197700 protein) Q5JQV5 Q5JQV5_ORYSJ OSJNBa0061C06.7 Os04g0197700 OSNPB_040197700 ENOG411DYT9 calmodulin N-methyltransferase F4JNX3 F4JNX3_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein R-ATH-2514859;R-ATH-8876725; 34491 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:504955358; AT4G35987 Putative methyltransferase Expressed protein (Os03g0243800 protein) Q10P78 Q10P78_ORYSJ Os03g0243800 LOC_Os03g14020 OSNPB_030243800 ENOG411DYT8 GCD1 Q9LVA9,F4K6F8 Q9LVA9_ARATH,F4K6F8_ARATH Gb|AAC32909.1 (Ribosomal protein L20),Ribosomal protein L20 48314,43940 Gb|AAC32909.1 (Ribosomal protein L20),Ribosomal protein L20 ribosome [GO:0005840] locus:2167998; AT5G62270 NA Mucin-like protein (Os01g0801700 protein) (cDNA clone:J033067K14, full insert sequence) Q8S2G4 Q8S2G4_ORYSJ Os01g0801700 Os01g0801700 OsJ_03779 OSNPB_010801700 P0003D09.24 ENOG411EGV8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os08g0217050 protein (Fragment) A0A0N7KPG5 A0A0N7KPG5_ORYSJ Os08g0217050 OSNPB_080217050 ENOG411EGV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EGV6 Q9ZPT2 Q9ZPT2_ARATH Uncharacterized protein At2g14070 (Wound-responsive protein-like protein) 21995 Uncharacterized protein At2g14070 (Wound-responsive protein-like protein) locus:2053395; AT2G14070 Wound-induced protein NA NA NA NA NA NA NA ENOG411EGV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGV5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EGV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nuclear cap-binding protein subunit NA NA NA NA NA NA NA ENOG411EGV3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF822) NA NA NA NA NA NA NA ENOG411EGV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transcription factor NA NA NA NA NA NA NA ENOG411EGV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGVN F10K1.16 Q9LMK6 Q9LMK6_ARATH At1g07135 (F10K1.16 protein) (Glycine-rich protein) (Predicted GPI-anchored protein) 15682 At1g07135 (F10K1.16 protein) (Glycine-rich protein) (Predicted GPI-anchored protein) anchored component of membrane [GO:0031225] locus:505006106; AT1G07135 NA NA NA NA NA NA NA NA ENOG411EGVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGVI Q8LC41,B3H6H2 Q8LC41_ARATH,B3H6H2_ARATH At1g52855,Uncharacterized protein 7752,7605 At1g52855,Uncharacterized protein locus:1006230684;,locus:4515103075; AT1G52855,AT3G15534 NA NA NA NA NA NA NA NA ENOG411EGVF F1O19.2 Q9FZI4,F4HQ25,A0A1P8AVN7 Q9FZI4_ARATH,F4HQ25_ARATH,A0A1P8AVN7_ARATH At1g66930 (F1O19.2 protein) (Kinase-like protein) (Uncharacterized protein At1g66940/T4O24_1) (Uncharacterized protein T4O24.1),Kinase-like protein 36658,34417,40082 At1g66930 (F1O19.2 protein) (Kinase-like protein) (Uncharacterized protein At1g66940/T4O24_1) (Uncharacterized protein T4O24.1),Kinase-like protein integral component of membrane [GO:0016021]; kinase activity [GO:0016301]; polysaccharide binding [GO:0030247],integral component of membrane [GO:0016021]; kinase activity [GO:0016301] locus:2204470; AT1G66940 Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EGVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGVE B3H7N2 B3H7N2_ARATH Uncharacterized protein 48105 Uncharacterized protein locus:4515102642; AT1G37113 NA NA NA NA NA NA NA NA ENOG411EGVB Q56YK7 Q56YK7_ARATH Transmembrane protein 11075 Transmembrane protein integral component of membrane [GO:0016021] locus:4010713595; AT1G74458 NA NA NA NA NA NA NA NA ENOG411EGVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amidase NA NA NA NA NA NA NA ENOG411EGVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os10g0133100 protein) (cDNA clone:J023080B21, full insert sequence) Q33B79 Q33B79_ORYSJ LOC_Os10g04370 Os10g0133100 OsJ_30626 OSNPB_100133100 ENOG411EGVZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic-type carbonic anhydrase Os09g0454400 protein Q67UA6 Q67UA6_ORYSJ Os09g0454400 OSNPB_090454400 P0025H07.3 P0488D02.39 ENOG411EGVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH NA NA NA NA NA NA NA ENOG411EGVY Q2V421,A8MQW9 Q2V421_ARATH,A8MQW9_ARATH Transmembrane protein 8763,8833 Transmembrane protein integral component of membrane [GO:0016021] locus:1009023230;,locus:4010713659; AT2G36724,AT2G26865 Encodes a Plant thionin family protein NA NA NA NA NA NA NA ENOG411EGVV GRP3S,GRP3,GRP9,ATGRP9,GRP-3 Q9ZSJ6,Q9SL15,Q8S8J7,C0Z2S1,B9DFW2,F4IH99,Q9SL16,Q9SL23,Q9SL14,A0A1P8B1B5,A0A1P8B346,F4IH98,B3H726,F4IH94,B3H6I3,F4IHB2,F4IHA2,F4IHA4,F4IH97,F4IH96 GRP3S_ARATH,GRP3_ARATH,Q8S8J7_ARATH,C0Z2S1_ARATH,B9DFW2_ARATH,F4IH99_ARATH,Q9SL16_ARATH,Q9SL23_ARATH,Q9SL14_ARATH,A0A1P8B1B5_ARATH,A0A1P8B346_ARATH,F4IH98_ARATH,B3H726_ARATH,F4IH94_ARATH,B3H6I3_ARATH,F4IHB2_ARATH,F4IHA2_ARATH,F4IHA4_ARATH,F4IH97_ARATH,F4IH96_ARATH Glycine-rich protein 3 short isoform,Glycine-rich protein 3 (AtGRP-3),GLYCINE RICH PROTEIN 9 (Putative glycine-rich protein),AT2G05380 protein (Glycine-rich protein 3 short isoform),AT2G05440 protein (GLYCINE RICH PROTEIN 9),GLYCINE RICH PROTEIN 9,At2g05510 (Glycine-rich protein family) (Putative glycine-rich protein),Glycine-rich protein family (Putative glycine-rich protein),Glycine-rich protein family,Glycine-rich protein 3 FUNCTION: Regulates the function of the receptor protein kinase WAK1. {ECO:0000250}.,FUNCTION: Regulates the function of the receptor protein kinase WAK1, and namely the phosphorylation of OEE2. {ECO:0000269|PubMed:12767910}. MISCELLANEOUS: GRP3 and GRP3S bind to WAK1, WAK3 and WAK5, but GRP2, GRP4,GRP6, GRP7 and GRP8 did not bind to any of the WAK isoforms. 11586,14289,11636,10450,12051,13230,11817,13816,11386,13363,10458,12059,9580,10571,8933,11193,9752,8656,12644,10602 Glycine-rich protein 3 short isoform,Glycine-rich protein 3 (AtGRP-3),GLYCINE RICH PROTEIN 9 (Putative glycine-rich protein),AT2G05380 protein (Glycine-rich protein 3 short isoform),AT2G05440 protein (GLYCINE RICH PROTEIN 9),GLYCINE RICH PROTEIN 9,At2g05510 (Glycine-rich protein family) (Putative glycine-rich protein),Glycine-rich protein family (Putative glycine-rich protein),Glycine-rich protein family,Glycine-rich protein 3 proteinaceous extracellular matrix [GO:0005578],proteinaceous extracellular matrix [GO:0005578]; regulation of cell size [GO:0008361]; response to abscisic acid [GO:0009737]; response to aluminum ion [GO:0010044]; response to desiccation [GO:0009269]; response to ethylene [GO:0009723]; response to salicylic acid [GO:0009751]; root development [GO:0048364]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Predominantly expressed in leaves and stems. {ECO:0000269|PubMed:11335717}. locus:2042803;,locus:2058949;,locus:2058964;,locus:2058959;,locus:2058934; AT2G05380,AT2G05520,AT2G05440,AT2G05510,AT2G05530 Glycine rich protein family NA NA NA NA NA NA NA ENOG411EGVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EGVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0823800 protein Q5JN73 Q5JN73_ORYSJ P0031D02.20 Os01g0823800 OSNPB_010823800 ENOG411EGVR Q9LYH4 Q9LYH4_ARATH Proline-rich family protein (Uncharacterized protein F14F18_160) 18990 Proline-rich family protein (Uncharacterized protein F14F18_160) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2143084; AT5G11990 NA NA NA NA NA NA NA NA ENOG411EGVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411EGVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411E6Z3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ribosomal protein S4 NA NA NA NA NA NA NA ENOG411E6ZV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E6ZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0634200 protein) (cDNA clone:J013073J21, full insert sequence) Q2R0S3 Q2R0S3_ORYSJ Os11g0634200 LOC_Os11g41600 Os11g0634200 OsJ_32869 OSNPB_110634200 ENOG411E6ZG A0A1P8B4Y2 A0A1P8B4Y2_ARATH Uncharacterized protein 22163 Uncharacterized protein NA Os06g0343500 protein,Os01g0735450 protein,Os07g0503200 protein,Os01g0869450 protein (Fragment) Q0DCD3,C7IXW6,Q6Z480,A0A0P0VB07 Q0DCD3_ORYSJ,C7IXW6_ORYSJ,Q6Z480_ORYSJ,A0A0P0VB07_ORYSJ Os06g0343500 Os06g0343500 OSNPB_060343500,Os01g0735450 Os01g0735450 OSNPB_010735450,Os07g0503200 Os07g0503200 OSNPB_070503200 P0430F03.26,Os01g0869450 OSNPB_010869450 ENOG411E6ZF ATL56 Q9ZV51 ATL56_ARATH RING-H2 finger protein ATL56 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL56) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 21067 RING-H2 finger protein ATL56 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL56) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2053994; AT2G18670 RING NA NA NA NA NA NA NA ENOG411E6ZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6ZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein kinase inhibitor activity Cyclin-dependent protein kinase inhibitor SMR1 (Protein SIAMESE-RELATED 1) Q9AV28 SMR1_ORYSJ SMR1 Os10g0546400 LOC_Os10g39920 OSJNBa0001O14.8 FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000250}. ENOG411E6ZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Mov34 NA NA NA NA NA NA NA ENOG411DQWE NEDP1 Q9LSS7 RUBP1_ARATH NEDD8-specific protease 1 (EC 3.4.22.68) (Deneddylase-1) FUNCTION: Processes the pre-form of the ubiquitin-like protein NEDD8/RUB1. Has the capacity to discriminate between NEDD8/RUB1 and ubiquitin. Has no SUMO protease activity. {ECO:0000269|PubMed:16920872}. R-ATH-5689603;R-ATH-8951664; 3.4.22.68 25684 NEDD8-specific protease 1 (EC 3.4.22.68) (Deneddylase-1) NEDD8-specific protease activity [GO:0019784] locus:2144020; AT5G60190 protease Os12g0102350 protein (cDNA clone:001-039-H08, full insert sequence),Os11g0102700 protein (Ulp1 protease family, C-terminal catalytic domain containing protein, expressed) (cDNA clone:J013071J20, full insert sequence),Os12g0103580 protein,Os12g0127600 protein (Fragment) B7E6X2,Q2RBQ7,A0A0P0Y5X3,A0A0P0Y6T8 B7E6X2_ORYSJ,Q2RBQ7_ORYSJ,A0A0P0Y5X3_ORYSJ,A0A0P0Y6T8_ORYSJ Os12g0102350 OsJ_34895 OSNPB_120102350,Os11g0102700 LOC_Os11g01180 Os11g0102700 OSNPB_110102700,Os12g0103580 OSNPB_120103580,Os12g0127600 OSNPB_120127600 ENOG411DQWF Q9FIL6 Q9FIL6_ARATH At5g58950 (Protein kinase superfamily protein) (Protein-tyrosine kinase) 58856 At5g58950 (Protein kinase superfamily protein) (Protein-tyrosine kinase) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein tyrosine kinase activity [GO:0004713]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2154573; AT5G58950 Protein kinase domain containing protein expressed Os01g0201200 protein,Os05g0519200 protein,Os01g0747400 protein,Os05g0519200 protein (cDNA clone:J013153L22, full insert sequence) Q8L650,Q0DGP8,Q94J41,Q65X10,Q60EF4 Q8L650_ORYSJ,Q0DGP8_ORYSJ,Q94J41_ORYSJ,Q65X10_ORYSJ,Q60EF4_ORYSJ Os01g0201200 Os01g0201200 B1015E06.24 OsJ_00767 OSNPB_010201200,Os05g0519200 Os05g0519200 OsJ_19227 OSNPB_050519200,Os01g0747400 Os01g0747400 OsJ_03440 OSNPB_010747400 P0481E12.9,Os05g0519200 OSNPB_050519200 P0599F04.8 ENOG411DQWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EXOIII OSJNBa0053K19.7 protein (Os04g0623400 protein) (cDNA clone:J023060F18, full insert sequence),Os04g0623400 protein Q7FAS2,Q0J9Z9 Q7FAS2_ORYSJ,Q0J9Z9_ORYSJ Os04g0623400 OsJ_16216 OSJNBa0053K19.7 OSNPB_040623400,Os04g0623400 Os04g0623400 OSNPB_040623400 ENOG411DQWW DPE1 Q9LV91 DPE1_ARATH 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (Protein DISPROPORTIONATING ENZYME 1) DISRUPTION PHENOTYPE: Increased amounts of maltotriose and leaf starch. {ECO:0000269|PubMed:11359613, ECO:0000269|PubMed:19946617}. Slightly reduced fresh weight; Elevated starch levels-S. Smith-2001 FUNCTION: Chloroplastic alpha-glucanotransferase involved in maltotriose metabolism. Probably uses maltotriose as substrate to transfer a maltosyl unit from one molecule to another, resulting in glucose and maltopentaose. The latter can then be further metabolized to maltose and maltotriose by beta-amylase. Required for normal starch degradation in leaves. {ECO:0000269|PubMed:11359613, ECO:0000269|PubMed:19946617}. ARA:AT5G64860-MONOMER;MetaCyc:AT5G64860-MONOMER; 2.4.1.25; 2.4.1.25 64412 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (Protein DISPROPORTIONATING ENZYME 1) amyloplast [GO:0009501]; chloroplast [GO:0009507]; 4-alpha-glucanotransferase activity [GO:0004134]; beta-maltose 4-alpha-glucanotransferase activity [GO:0102500]; glucose metabolic process [GO:0006006]; maltose catabolic process [GO:0000025]; starch catabolic process [GO:0005983] locus:2177714; AT5G64860 4-alpha-glucanotransferase 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (Protein DISPROPORTIONATING ENZYME 1) Q8LI30 DPE1_ORYSJ DPE1 Os07g0627000 LOC_Os07g43390 OJ1339_F05.134 P0506F02.102 FUNCTION: Chloroplastic alpha-glucanotransferase involved in maltotriose metabolism. {ECO:0000250}. ENOG411E6C3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIR synthase related protein N-terminal domain NA NA NA NA NA NA NA ENOG411DZIQ NPF1.3,NPF1.1,NPF1.2 Q9LYD5,Q8LPL2,Q9M817 PTR48_ARATH,PTR32_ARATH,PTR6_ARATH Protein NRT1/ PTR FAMILY 1.3 (AtNPF1.3),Protein NRT1/ PTR FAMILY 1.1 (AtNPF1.1) (Nitrate transporter 1.12),Protein NRT1/ PTR FAMILY 1.2 (AtNPF1.2) (Nitrate transporter 1.11) DISRUPTION PHENOTYPE: Nrt1.11 and nrt1.12 double mutant is defective in high-nitrate-enhanced growth. {ECO:0000269|PubMed:24006285}. FUNCTION: Low-affinity nitrate transporter involved in xylem-to-phloem transfer for redistributing nitrate into developing leaves. Not involved in dipeptides transport. {ECO:0000269|PubMed:24006285}. R-ATH-427975;R-ATH-6798695; 53386,65333,66904 Protein NRT1/ PTR FAMILY 1.3 (AtNPF1.3),Protein NRT1/ PTR FAMILY 1.1 (AtNPF1.1) (Nitrate transporter 1.12),Protein NRT1/ PTR FAMILY 1.2 (AtNPF1.2) (Nitrate transporter 1.11) integral component of membrane [GO:0016021]; transporter activity [GO:0005215],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; low-affinity nitrate transmembrane transporter activity [GO:0080054]; low-affinity nitrate transport [GO:0080055] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in siliques, shoots and roots. Mainly detected in larger expanded leaves, in the companion cells of major veins. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:24006285}.,TISSUE SPECIFICITY: Expressed in shoots, stems, leaves, flowers and siliques. Mainly detected in larger expanded leaves, in the companion cells of major veins. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:24006285}. locus:2144281;,locus:2093442;,locus:2037452; AT5G11570,AT3G16180,AT1G52190 Peptide transporter Os01g0761400 protein (Putative nitrite transporter) (Putative peptide transporter) (cDNA clone:001-128-A10, full insert sequence),Os01g0761500 protein (Putative nitrate transporter) (Putative peptide transporter) Q94DS0,Q94DR9 Q94DS0_ORYSJ,Q94DR9_ORYSJ P0460E08.28 Os01g0761400 OsJ_03537 OSNPB_010761400 P0512C01.21,P0460E08.29 Os01g0761500 OSNPB_010761500 P0512C01.23 ENOG411DZIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411DZIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Patatin group Patatin (EC 3.1.1.-) A0A0P0X034 A0A0P0X034_ORYSJ Os06g0677000 OSNPB_060677000 FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ENOG411DZIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os03g0255000 protein (Fragment) A0A0P0VVK9 A0A0P0VVK9_ORYSJ Os03g0255000 OSNPB_030255000 ENOG411ECWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E9JQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (NB-ARC domain, putative) (Os11g0249000 protein),Disease resistance protein RPM1-like (Os08g0387700 protein),Os08g0387700 protein Q53JL2,Q6ZA03,Q0J5Y6 Q53JL2_ORYSJ,Q6ZA03_ORYSJ,Q0J5Y6_ORYSJ Os11g0249000 LOC_Os11g14380 Os11g0249000 OsJ_33538 OSNPB_110249000,P0434E03.28-2 Os08g0387700 OSNPB_080387700,Os08g0387700 Os08g0387700 OSNPB_080387700 ENOG411DSVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os04g0481600 protein A0A0P0WBW4 A0A0P0WBW4_ORYSJ Os04g0481600 OSNPB_040481600 ENOG411DSVX PDIL5-4 Q9T042,F4JIR2 PDI54_ARATH,F4JIR2_ARATH Protein disulfide-isomerase 5-4 (AtPDIL5-4) (Protein disulfide-isomerase 7) (PDI7) (Protein disulfide-isomerase 8-2) (AtPDIL8-2),PDI-like 5-4 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}. 53893,59639 Protein disulfide-isomerase 5-4 (AtPDIL5-4) (Protein disulfide-isomerase 7) (PDI7) (Protein disulfide-isomerase 8-2) (AtPDIL8-2),PDI-like 5-4 cell [GO:0005623]; integral component of membrane [GO:0016021]; cell redox homeostasis [GO:0045454],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595}. locus:2136491; AT4G27080 Protein disulfide isomerase Protein disulfide isomerase-like 5-4 (OsPDIL5-4) (Protein disulfide isomerase-like 8-1) (OsPDIL8-1) Q69SA9 PDI54_ORYSJ PDIL5-4 PDIL8-1 Os07g0524100 LOC_Os07g34030 OsJ_24505 OSJNBb0052O11.108 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411DSVZ EMB2423 A0A1I9LMG5,F4JF17 A0A1I9LMG5_ARATH,F4JF17_ARATH Embryo defective 2423 Embryo defective; Preglobular / Globular-D. Meinke-2003 112680,114702 Embryo defective 2423 locus:504955643; AT3G48470 telomere length regulation protein Os02g0598400 protein,Os02g0598400 protein (cDNA clone:002-134-E08, full insert sequence),Os02g0599100 protein,Os02g0598800 protein,Os02g0600000 protein (Fragment) Q67TK8,Q6K1U9,Q6K1U1,A0A0P0VLG4,A0A0P0VLL0 Q67TK8_ORYSJ,Q6K1U9_ORYSJ,Q6K1U1_ORYSJ,A0A0P0VLG4_ORYSJ,A0A0P0VLL0_ORYSJ Os02g0598400 Os02g0598400 OJ1212_D02.18 OSJNBa0038P01.2 OSNPB_020598400,Os02g0598400 OJ1212_D02.17 OSJNBa0038P01.1 OSNPB_020598400,OSJNBa0038P01.31 Os02g0599100 OSNPB_020599100,Os02g0598800 OSNPB_020598800,Os02g0600000 OSNPB_020600000 ENOG411DSVQ PME1,PME26 Q43867,Q9LUL8 PME1_ARATH,PME26_ARATH Pectinesterase 1 (PE 1) (EC 3.1.1.11) (Pectin methylesterase 1) (AtPME1),Putative pectinesterase/pectinesterase inhibitor 26 (AtPMEpcrC) [Includes: Pectinesterase inhibitor 26 (Pectin methylesterase inhibitor 26); Pectinesterase 26 (PE 26) (EC 3.1.1.11) (Pectin methylesterase 26) (AtPME26)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Demethylates protein phosphatase 2A (PP2A) that have been reversibly carboxymethylated by LCMT1. Acts as negative regulators of genes involved in salt stress response (PubMed:28741704). {ECO:0000250|UniProtKB:Q5MFV8, ECO:0000269|PubMed:28741704}.,FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI regions may act as autoinhibitory domains and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT1G53840-MONOMER;,ARA:AT3G14300-MONOMER; 3.1.1.11 64149,105628 Pectinesterase 1 (PE 1) (EC 3.1.1.11) (Pectin methylesterase 1) (AtPME1),Putative pectinesterase/pectinesterase inhibitor 26 (AtPMEpcrC) [Includes: Pectinesterase inhibitor 26 (Pectin methylesterase inhibitor 26); Pectinesterase 26 (PE 26) (EC 3.1.1.11) (Pectin methylesterase 26) (AtPME26)] cell wall [GO:0005618]; endosome [GO:0005768]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490],cell periphery [GO:0071944]; cell wall [GO:0005618]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:9767082}. locus:2197061;,locus:2091070; AT1G53840,AT3G14300 pectinesterase NA NA NA NA NA NA NA ENOG411DSVP BRR2B,BRR2A O48534,Q9SYP1 DEXHD_ARATH,DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH13 (EC 3.6.4.13) (BRR2 homolog B) (AtBRR2B) (Pre-mRNA-splicing helicase BRR2B),DExH-box ATP-dependent RNA helicase DExH12 (EC 3.6.4.13) (BRR2 homolog A) (AtBRR2A) (Pre-mRNA-splicing helicase BRR2A) (Protein EMBRYO DEFECTIVE 1507) DISRUPTION PHENOTYPE: Embryo defective. {ECO:0000269|PubMed:15266054}. Embryo defective; Globular-D. Meinke-2002 FUNCTION: RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. Involved in spliceosome assembly, activation and disassembly. {ECO:0000250|UniProtKB:P32639}. R-ATH-72163;R-ATH-72165; 3.6.4.13 247389,247105 DExH-box ATP-dependent RNA helicase DExH13 (EC 3.6.4.13) (BRR2 homolog B) (AtBRR2B) (Pre-mRNA-splicing helicase BRR2B),DExH-box ATP-dependent RNA helicase DExH12 (EC 3.6.4.13) (BRR2 homolog A) (AtBRR2A) (Pre-mRNA-splicing helicase BRR2A) (Protein EMBRYO DEFECTIVE 1507) plasmodesma [GO:0009506]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],cytosol [GO:0005829]; membrane [GO:0016020]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380]; vegetative to reproductive phase transition of meristem [GO:0010228] locus:2059969;,locus:2037375; AT2G42270,AT1G20960 Small nuclear ribonucleoprotein Os02g0107000 protein (Fragment),Os03g0743800 protein (Putative Sec63 domain containing protein) (U5 small nuclear ribonucleoprotein 200 kDa helicase, putative),Os02g0108700 protein Q0E4P2,Q84MP1,A0A0P0VDW4 Q0E4P2_ORYSJ,Q84MP1_ORYSJ,A0A0P0VDW4_ORYSJ Os02g0107000 Os02g0107000 OSNPB_020107000,OSJNBb0036F07.6 Os03g0743800 LOC_Os03g53220 OSNPB_030743800,Os02g0108700 OSNPB_020108700 ENOG411DSVS Q9SK69 Q9SK69_ARATH At2g20330/F11A3.12 (Putative WD-40 repeat protein) (Transducin/WD40 repeat-like superfamily protein) 71201 At2g20330/F11A3.12 (Putative WD-40 repeat protein) (Transducin/WD40 repeat-like superfamily protein) Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2038952; AT2G20330 WD repeat-containing protein Os10g0464100 protein (Putative WD domain containing protein) (WD-40 repeat protein, putative, expressed) Q8H919 Q8H919_ORYSJ Os10g0464100 LOC_Os10g32710 Os10g0464100 OSJNBa0071K18.5 OSNPB_100464100 ENOG411DSVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 Os02g0771200 protein (Tyrosine specific protein phosphatase-like) (cDNA clone:J013075K03, full insert sequence),Os02g0771200 protein (Fragment) Q6ZHH2,A0A0P0VQ89 Q6ZHH2_ORYSJ,A0A0P0VQ89_ORYSJ Os02g0771200 Os02g0771200 OJ1353_F08.10 OsJ_08538 OSNPB_020771200,Os02g0771200 OSNPB_020771200 ENOG411DSVU CLSY4,CLSY3,CLSY1,CLSY2,CHR38 Q9LK10,F4I8S3,Q9M297,F4K493,A0A1I9LTS2 CLSY4_ARATH,CLSY3_ARATH,CLSY1_ARATH,CLSY2_ARATH,A0A1I9LTS2_ARATH SNF2 domain-containing protein CLASSY 4 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 40) (AtCHR40),SNF2 domain-containing protein CLASSY 3 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 31) (AtCHR31),SNF2 domain-containing protein CLASSY 1 (Protein CHROMATIN REMODELING 38),SNF2 domain-containing protein CLASSY 2 (Protein CHROMATIN REMODELING 42),Chromatin remodeling 38 DISRUPTION PHENOTYPE: Decreased, but not completely blocked de novo methylation. Probably due to a partial redundancy with CLSY2. {ECO:0000269|PubMed:21150311}. Reduced silencing.,Reduced spreading of silencing loss of endogenous 24 nt siRNAs. FUNCTION: Probable chromatin remodeling factor. {ECO:0000303|PubMed:16547115}.,FUNCTION: Probable chromatin remodeling factor. Required for the initial establishment of DNA methylation and for accumulation of 24-nt siRNAs. May act on RNA templates by remodeling ribonucleoprotein structures and thereby influencing the availability of the RNA to polymerases. {ECO:0000269|PubMed:17526749, ECO:0000269|PubMed:21150311}.,FUNCTION: Probable chromatin remodeling factor. MISCELLANEOUS: Associates in vivo with Pol IV but not with Pol V. {ECO:0000305|PubMed:23637343}. ARA:GQT-2152-MONOMER; 3.6.4.- 128343,158723,144574,145314,144849 SNF2 domain-containing protein CLASSY 4 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 40) (AtCHR40),SNF2 domain-containing protein CLASSY 3 (EC 3.6.4.-) (Protein CHROMATIN REMODELING 31) (AtCHR31),SNF2 domain-containing protein CLASSY 1 (Protein CHROMATIN REMODELING 38),SNF2 domain-containing protein CLASSY 2 (Protein CHROMATIN REMODELING 42),Chromatin remodeling 38 nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386],nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; gene silencing by RNA [GO:0031047],nucleus [GO:0005634]; ATP binding [GO:0005524]; helicase activity [GO:0004386],ATP binding [GO:0005524] locus:2087223;,locus:2201006;,locus:2096499;,locus:2149957; AT3G24340,AT1G05490,AT3G42670,AT5G20420 chromatin remodeling Os05g0392400 protein (Fragment),Os07g0692500 protein (Fragment),Os07g0692600 protein (Fragment) Q0DIF8,Q0D3D7,Q0D3D6 Q0DIF8_ORYSJ,Q0D3D7_ORYSJ,Q0D3D6_ORYSJ Os05g0392400 Os05g0392400 OSNPB_050392400,Os07g0692500 Os07g0692500 OSNPB_070692500,Os07g0692600 Os07g0692600 OSNPB_070692600 ENOG411DSVT MJB21.9 Q9M069,Q8VY12,A0A1P8B4U8,A0A1P8B4V2,F4IKB3 E137_ARATH,Q8VY12_ARATH,A0A1P8B4U8_ARATH,A0A1P8B4V2_ARATH,F4IKB3_ARATH Glucan endo-1,3-beta-glucosidase 7 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta-1,3-endoglucanase 7) (Beta-1,3-glucanase 7),Glycosyl hydrolase family 17 protein (Putative beta-1,3-glucanase),O-Glycosyl hydrolases family 17 protein ARA:AT4G34480-MONOMER;,ARA:AT5G42720-MONOMER; 3.2.1.39 53121,47169,37845,41473,54147 Glucan endo-1,3-beta-glucosidase 7 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta-1,3-endoglucanase 7) (Beta-1,3-glucanase 7),Glycosyl hydrolase family 17 protein (Putative beta-1,3-glucanase),O-Glycosyl hydrolases family 17 protein anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; extracellular region [GO:0005576]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2139519;,locus:2165432;,locus:2042604; AT4G34480,AT5G42720,AT2G16230 glucan endo-1-3-beta-glucosidase Glucan endo-1,3-beta-glucosidase 7, putative, expressed (Os03g0669300 protein) (Putative beta 1,3-glucanase),Os03g0669300 protein Q7Y179,Q0DPR0 Q7Y179_ORYSJ,Q0DPR0_ORYSJ OSJNBa0039O18.8 Os03g0669300 LOC_Os03g46660 OsJ_18228 OSNPB_030669300,Os03g0669300 OSNPB_030669300 ENOG411DSVW MGH6.16,MGH6.14 Q9LDS0,Q9LDK4,Q9LDB0,A0A1I9LP43 Q9LDS0_ARATH,Q9LDK4_ARATH,Q9LDB0_ARATH,A0A1I9LP43_ARATH AT3G13030 protein (HAT transposon superfamily protein) (Transposase-like protein) (Uncharacterized protein At3g13030),HAT transposon superfamily protein (Transposase-like protein),HAT transposon superfamily protein 61456,68173,65104,57850 AT3G13030 protein (HAT transposon superfamily protein) (Transposase-like protein) (Uncharacterized protein At3g13030),HAT transposon superfamily protein (Transposase-like protein),HAT transposon superfamily protein nucleic acid binding [GO:0003676]; protein dimerization activity [GO:0046983] locus:2089250;,locus:2089240;,locus:2089230; AT3G13030,AT3G13020,AT3G13010 Protein of unknown function (DUF 659) HAT dimerisation domain-containing protein-like (Os06g0704000 protein) (cDNA clone:J033048H06, full insert sequence) Q5Z810 Q5Z810_ORYSJ Os06g0704000 OJ1215_E11.19 OsJ_22556 OSNPB_060704000 ENOG411DSVV isi1 Q84J43 Q84J43_ARATH Binding protein (Impaired sucrose induction 1) (Uncharacterized protein At4g27750) The muatant showed a reduction in the sucrose-induced expression of the starch biosynthetic gene ApL3. Dwarf; Reduced fertility-M. Bevan-2006 33486 Binding protein (Impaired sucrose induction 1) (Uncharacterized protein At4g27750) regulation of carbohydrate metabolic process [GO:0006109] locus:2137757; AT4G27750 impaired sucrose induction Os06g0129300 protein (cDNA clone:J023133G19, full insert sequence) Q658H7 Q658H7_ORYSJ Os06g0129300 OSNPB_060129300 P0538C01.15 ENOG411DSVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DSVK PAP18 Q9LJU7 PPA18_ARATH Purple acid phosphatase 18 (EC 3.1.3.2) ARA:AT3G20500-MONOMER; 3.1.3.2 49870 Purple acid phosphatase 18 (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2085770; AT3G20500 Purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2) Q10I09 Q10I09_ORYSJ LOC_Os03g37130 Os03g0568900 OSNPB_030568900 ENOG411DSVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Remorin C-terminal region Os10g0325400 protein (Fragment) A0A0P0XTC3 A0A0P0XTC3_ORYSJ Os10g0325400 OSNPB_100325400 ENOG411DSVM CYP72A9 F4IW82,A0A1I9LTL1 F4IW82_ARATH,A0A1I9LTL1_ARATH Cytochrome P450, family 72, subfamily A, polypeptide 9 58447,64670 Cytochrome P450, family 72, subfamily A, polypeptide 9 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2089546; AT3G14630 Cytochrome P450 Cytochrome P450-like (Os01g0627400 protein) Q5ZE54 Q5ZE54_ORYSJ Os01g0627400 OSNPB_010627400 P0006C01.32 P0688A04.10 ENOG411DSVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411DSVA ndhM Q2V2S7 NDHM_ARATH NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit M) (NDH subunit M) (NDH-M) (NADH-plastoquinone oxidoreductase subunit M) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:15608332}. Photorespiratory phenotype: chlorosis at ambient CO2 levels fully rescued at 3% CO2.,Dramatic dwarf and chlorotic phenotype when grown on soil and on axenic MS medium.,Enhanced H2O2 accumulation.,shmt1-2 plants died without producing progeny under the growth conditions used in this study. Complete loss of post-illumination chlorophyll fluorescence; Slightly increased non-photochemical quenching-G. Peltier-2005 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 1.6.5.- 24795 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit M) (NDH subunit M) (NDH-M) (NADH-plastoquinone oxidoreductase subunit M) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]; NADH dehydrogenase complex (plastoquinone) assembly [GO:0010258]; transport [GO:0006810] locus:1009023311; AT4G37925 electron donor via FMN and iron-sulfur (Fe-S) centers to quinones in the respiratory and or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit M) (NDH subunit M) (NDH-M) (NADH-plastoquinone oxidoreductase subunit M) Q7FB12 NDHM_ORYSJ ndhM NDH-M Os04g0539000 LOC_Os04g45600 OsJ_014964 OSJNBa0011L07.3 OSJNBa0091D06.25 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. ENOG411DSVC MKK6 Q9FJV0 M2K6_ARATH Mitogen-activated protein kinase kinase 6 (AtMKK6) (MAP kinase kinase 6) (EC 2.7.12.2) (Protein Arabidopsis NQK1 homolog) DISRUPTION PHENOTYPE: Plants exhibit a dwarf phenotype with fewer flowers, large cells with multiple nuclei in various organs and large malformed pollen grains. Defects in the formation of the cell plate. RNAi MKK6 displays fewer lateral roots. {ECO:0000269|PubMed:12704083, ECO:0000269|PubMed:20802223, ECO:0000269|PubMed:21098735, ECO:0000269|PubMed:21575092, ECO:0000269|PubMed:21904115}. Dwarf; Small leaves; Short roots; Rough cotyledons; Cell outgrowths on root epidermis-Y. Machida-2003 FUNCTION: The ANPs-MKK6-MPK4 module is involved in the regulation of plant cytokinesis during meiosis and mitosis. MKK6-MPK13 module positively regulates lateral root formation. Phosphorylates and activates MPK4. Activates MPK5 and MPK13 in vitro. {ECO:0000269|PubMed:12704083, ECO:0000269|PubMed:15474000, ECO:0000269|PubMed:20802223, ECO:0000269|PubMed:21098735, ECO:0000269|PubMed:21575092, ECO:0000269|PubMed:21904115}. R-ATH-110056;R-ATH-112411;R-ATH-2559580;R-ATH-445144;R-ATH-450302;R-ATH-5674135;R-ATH-5674499; 2.7.12.2 39837 Mitogen-activated protein kinase kinase 6 (AtMKK6) (MAP kinase kinase 6) (EC 2.7.12.2) (Protein Arabidopsis NQK1 homolog) cytoskeleton [GO:0005856]; phragmoplast [GO:0009524]; ATP binding [GO:0005524]; MAP kinase kinase activity [GO:0004708]; protein serine/threonine kinase activity [GO:0004674]; lateral root formation [GO:0010311]; male meiosis cytokinesis [GO:0007112]; regulation of mitotic cell cycle [GO:0007346]; stress-activated protein kinase signaling cascade [GO:0031098] TISSUE SPECIFICITY: Expressed in roots, stems and flower buds. Higher levels in shoot apices and flowers. {ECO:0000269|PubMed:15474000, ECO:0000269|PubMed:20802223}. locus:2164981; AT5G56580 mitogen-activated protein kinase kinase Mitogen-activated protein kinase kinase 1 (MAP kinase kinase 1) (MAPKK1) (EC 2.7.12.2) (OsMEK1) Q5QN75 M2K1_ORYSJ MKK1 MEK1 Os01g0510100 LOC_Os01g32660 P0455H03.45 P0520B06.8 ENOG411DSVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os01g0821900 protein (Fragment) Q0JI63 Q0JI63_ORYSJ Os01g0821900 Os01g0821900 OSNPB_010821900 ENOG411DSVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0745700 protein (Protein kinase, putative, expressed) Q94GN4 Q94GN4_ORYSJ OJ1124_H03.28 Os03g0745700 LOC_Os03g53410 OSNPB_030745700 ENOG411DSVD TPS11 Q9ZV48 TPS11_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 11) (AtTPS11) 2.4.1.15 98275 Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 11) (AtTPS11) cytosol [GO:0005829]; mitochondrion [GO:0005739]; phosphatase activity [GO:0016791]; transferase activity, transferring glycosyl groups [GO:0016757]; trehalose biosynthetic process [GO:0005992]; trehalose metabolism in response to stress [GO:0070413] TISSUE SPECIFICITY: Expressed in leaves, roots, stems and flowers. {ECO:0000269|PubMed:11520870}. locus:2054027; AT2G18700 synthase Os02g0790500 protein (Fragment),Os02g0790500 protein A0A0P0VQK2,A0A0N7KG85 A0A0P0VQK2_ORYSJ,A0A0N7KG85_ORYSJ Os02g0790500 OSNPB_020790500 ENOG411DSVG POLL,Pol{lambda} Q9FNY4,A0A1P8APE6 DPOLL_ARATH,A0A1P8APE6_ARATH DNA polymerase lambda (Pol Lambda) (EC 2.7.7.7) (EC 4.2.99.-),DNA polymerase lambda (POLL) atpol{lambda] mutants exhibit hypersensitive growth response to UV-B irradiation. Reduced proficiency in double strand break repair and nucleotide excision repair. FUNCTION: Repair polymerase involved in base excision repair (BER) and responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Has both DNA polymerase and terminal transferase activities. Has a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity (By similarity). Involved in the repair of transposon-induced DNA double strand breaks (DSBs) (PubMed:21889425). Involved in repair of UV-B-mediated DNA damage during seedling development through an excision repair mechanism (PubMed:21227935). Involved the repair of DSBs induced by high salinity and DNA cross-linking agent. Functions via the DNA non-homologous end joining (NHEJ) pathway. {ECO:0000250|UniProtKB:Q67VC8, ECO:0000269|PubMed:21227935, ECO:0000269|PubMed:21889425}. 2.7.7.7; 4.2.99.- 59588,55002 DNA polymerase lambda (Pol Lambda) (EC 2.7.7.7) (EC 4.2.99.-),DNA polymerase lambda (POLL) nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; lyase activity [GO:0016829]; metal ion binding [GO:0046872]; DNA replication [GO:0006260]; double-strand break repair [GO:0006302]; double-strand break repair via nonhomologous end joining [GO:0006303]; nucleotide-excision repair [GO:0006289]; response to UV-B [GO:0010224],nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281] locus:2194610; AT1G10520 DNA polymerase DNA polymerase lambda (OsPolL) (Pol Lambda) (EC 2.7.7.7) (EC 4.2.99.-) Q67VC8 DPOLL_ORYSJ POLL Os06g0237200 LOC_Os06g13020 OSJNBa0068B06.5 FUNCTION: Repair polymerase involved in base excision repair (BER) and responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Has both DNA polymerase and terminal transferase activities. Has a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. {ECO:0000269|PubMed:15206945}. ENOG411DSVF SBE3 D2WL32 GLGB3_ARATH 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (AtSBE III) (EC 2.4.1.18) (Branching enzyme 1) (AtBE1) (Protein EMBRYO DEFECTIVE 2729) (Starch-branching enzyme 3) DISRUPTION PHENOTYPE: Embryolethal. Embryo developmental arrests at the heart stage associated with reduced cell divisions and abnormal cell differentiation, thereby leading to defects in setting up the shoot apical meristem, embryonic vascular tissues and cotyledons. Modified starch composition. This phenotype is enhanced when associated with SBE2.1 and SBE2.2 disruptions. {ECO:0000269|PubMed:17028209, ECO:0000269|PubMed:20377688}. Starch branching enzyme activity unaffected (similar to wild type levels).,Displays the same profile of polymerization (DP) as the corresponding be2 or be3 mutant.,Increased starch phosphorylase activity compared to wild type.,No starch branching enzyme activity detected. Null: Embryo defective; Transition; Knockdown: Dwarf; Pale-D. Meinke-2002 FUNCTION: Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Essential during embryogenesis. {ECO:0000269|PubMed:17028209, ECO:0000269|PubMed:20377688}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT3G20440-MONOMER; 2.4.1.18 103525 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (AtSBE III) (EC 2.4.1.18) (Branching enzyme 1) (AtBE1) (Protein EMBRYO DEFECTIVE 2729) (Starch-branching enzyme 3) amyloplast [GO:0009501]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 1,4-alpha-glucan branching enzyme activity [GO:0003844]; 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) [GO:0102752]; cation binding [GO:0043169]; carbohydrate metabolic process [GO:0005975]; glycogen biosynthetic process [GO:0005978]; post-embryonic development [GO:0009791]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence, and, to a lower extent, in seedlings, roots, stems, leaves, siliques and seeds. {ECO:0000269|PubMed:17698298, ECO:0000269|PubMed:20377688}. locus:2092349; AT3G20440 Alpha amylase C-terminal all-beta domain Os06g0367100 protein (Putative 1,4-alpha-glucan branching enzyme),Os06g0367100 protein (Fragment) Q5VN31,A0A0P0WWN1 Q5VN31_ORYSJ,A0A0P0WWN1_ORYSJ Os06g0367100 OSJNBa0015G09.14 OSNPB_060367100,Os06g0367100 OSNPB_060367100 ENOG411DSV9 PAD4 Q9S745 PAD4_ARATH Lipase-like PAD4 (EC 2.3.1.-) (Protein ENHANCED DISEASE SUSCEPTIBILITY 9) (Protein PHYTOALEXIN DEFICIENT 4) (AtPAD4) DISRUPTION PHENOTYPE: Impaired camalexin accumulation, reduced synthesis of salicylic acid (SA) and ethylene (ET), and altered expression of pathogenesis-related genes (e.g. PR1, ALD1, BGL2 and PR5) upon some pathogenic infections (e.g. P.syringae) and microbe-associated molecular patterns (MAMPs) recognition. Loss of the systemic acquired resistance response. Reduced fitness characterized by lower seed yield and survival rate. Increased sensitivity to P.syringae, H.arabidopsidis, turnip crinkle virus (TCV) and E.orontii. These phenotypes are reversed by SA treatment. Altered sensitivity to jasmonic acid (JA) and ethylene (ET) signaling. Decreased susceptibility to the fungal toxin fumonisin B1 (FB1) that mediates programmed cell death (PCD). Impaired induction of EDS5/SID1 expression after UV-C light exposure and pathogen attack. Altered LSD1-dependent acclimatization to light conditions that promote excess excitation energy (EEE). Impaired formation of lysigenous aerenchyma in response to hypoxia. Reduced resistance against green peach aphid (GPA, M.persicae) due to increased phloem sap uptake, reduced accumulation of antibiotic activity in petiole exudates, and delayed leaf senescence in insect-infested tissue, including chlorophyll loss, cell death, and senescence associated genes (SAG) expression. Loss of [5-(3,4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione- (DFPM-) induced root growth arrest and inhibition of stomatal closing mediated by abscisic acid (ABA). {ECO:0000269|PubMed:10557364, ECO:0000269|PubMed:10796016, ECO:0000269|PubMed:11041879, ECO:0000269|PubMed:11574472, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11826312, ECO:0000269|PubMed:11846877, ECO:0000269|PubMed:14617091, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:15447647, ECO:0000269|PubMed:15773856, ECO:0000269|PubMed:16299172, ECO:0000269|PubMed:16353557, ECO:0000269|PubMed:16813576, ECO:0000269|PubMed:17431038, ECO:0000269|PubMed:17725549, ECO:0000269|PubMed:18005228, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18266921, ECO:0000269|PubMed:20367470, ECO:0000269|PubMed:22353573, ECO:0000269|PubMed:23275581, ECO:0000269|PubMed:23400705, ECO:0000269|PubMed:8725243, ECO:0000269|PubMed:9136026, ECO:0000269|PubMed:9634589, ECO:0000269|PubMed:9881167}. The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance. Susceptible to fungal infection; Low camalexin levels-J. Glazebrook-1999 FUNCTION: Probable lipase required downstream of MPK4 for accumulation of the plant defense-potentiating molecule, salicylic acid, thus contributing to the plant innate immunity against invasive biotrophic pathogens and to defense mechanisms upon recognition of microbe-associated molecular patterns (MAMPs). Participates in the regulation of various molecular and physiological processes that influence fitness. Together with SG101, required for programmed cell death (PCD) triggered by NBS-LRR resistance proteins (e.g. RPS4, RPW8.1 and RPW8.2) in response to the fungal toxin fumonisin B1 (FB1) and avirulent pathogens (e.g. P.syringae pv. tomato strain DC3000 avrRps4 and pv. maculicola, turnip crinkle virus (TCV), and H.arabidopsidis isolates CALA2, EMOY2, EMWA1 and HIND4). Together with EDS1, confers a basal resistance by restricting the growth of virulent pathogens (e.g. H.arabidopsidis isolates NOCO2 and EMCO5, E.orontii isolate MGH, and P.syringae pv. tomato strain DC3000 or expressing HopW1-1 (HopPmaA)). Necessary for the salicylic acid-(SA-) dependent systemic acquired resistance (SAR) response that involves expression of multiple defense responses, including synthesis of the phytoalexin camalexin and expression of pathogenesis-related genes (e.g. PR1, ALD1, BGL2 and PR5) in response to pathogens, triggering a signal amplification loop that increases SA levels via EDS5 and SID2, but, together with EDS1, seems to repress the ethylene/jasmonic acid (ET/JA) defense pathway. May also function in response to abiotic stresses such as UV-C light and LSD1-dependent acclimatization to light conditions that promote excess excitation energy (EEE), probably by transducing redox signals and modulating stomatal conductance. Regulates the formation of lysigenous aerenchyma in hypocotyls in response to hypoxia, maybe via hydrogen peroxide production. Modulates leaf senescence in insect-infested tissue and triggers a phloem-based defense mechanism including antibiosis (e.g. green peach aphid (GPA), M.persicae) to limit phloem sap uptake and insect growth, thus providing an EDS1-independent basal resistance to insects. Also involved in regulation of root meristematic zone-targeted growth arrest together with EDS1 and in a VICTR-dependent manner. {ECO:0000269|PubMed:10557364, ECO:0000269|PubMed:10796016, ECO:0000269|PubMed:11041879, ECO:0000269|PubMed:11574472, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11826312, ECO:0000269|PubMed:11846877, ECO:0000269|PubMed:14617091, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:15447647, ECO:0000269|PubMed:15773856, ECO:0000269|PubMed:16040633, ECO:0000269|PubMed:16299172, ECO:0000269|PubMed:16353557, ECO:0000269|PubMed:16813576, ECO:0000269|PubMed:17431038, ECO:0000269|PubMed:17725549, ECO:0000269|PubMed:18005228, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18266921, ECO:0000269|PubMed:20367470, ECO:0000269|PubMed:21434927, ECO:0000269|PubMed:22072959, ECO:0000269|PubMed:22353573, ECO:0000269|PubMed:23275581, ECO:0000269|PubMed:23400705, ECO:0000269|PubMed:8725243, ECO:0000269|PubMed:9136026, ECO:0000269|PubMed:9634589, ECO:0000269|PubMed:9881167}. 2.3.1.- 60985 Lipase-like PAD4 (EC 2.3.1.-) (Protein ENHANCED DISEASE SUSCEPTIBILITY 9) (Protein PHYTOALEXIN DEFICIENT 4) (AtPAD4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; lipase activity [GO:0016298]; transferase activity [GO:0016740]; aerenchyma formation [GO:0010618]; cellular response to trehalose stimulus [GO:0071327]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to insect [GO:0002213]; ethylene-activated signaling pathway [GO:0009873]; leaf senescence [GO:0010150]; lipid catabolic process [GO:0016042]; negative regulation of defense response [GO:0031348]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; plant-type hypersensitive response [GO:0009626]; positive regulation of camalexin biosynthetic process [GO:1901183]; positive regulation of cell death [GO:0010942]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of defense response to insect [GO:1900367]; positive regulation of salicylic acid mediated signaling pathway [GO:0080151]; regulation of hydrogen peroxide metabolic process [GO:0010310]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of salicylic acid biosynthetic process [GO:0080142]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; response to bacterium [GO:0009617]; response to hypoxia [GO:0001666]; response to insect [GO:0009625]; response to other organism [GO:0051707]; response to salicylic acid [GO:0009751]; response to UV-C [GO:0010225]; systemic acquired resistance [GO:0009627]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862] locus:2079939; AT3G52430 Lipase (class 3) Os11g0195500 protein A0A0P0Y0L8 A0A0P0Y0L8_ORYSJ Os11g0195500 OSNPB_110195500 ENOG411DSV8 NRPD1,NRPE1,NRPD1A,NRPD1B Q9LQ02,Q5D869,A0A1P8ANM9,A0A1P8AYR1,A0A1P8ANM8,A0A1P8ANM7 NRPD1_ARATH,NRPE1_ARATH,A0A1P8ANM9_ARATH,A0A1P8AYR1_ARATH,A0A1P8ANM8_ARATH,A0A1P8ANM7_ARATH DNA-directed RNA polymerase IV subunit 1 (DNA-directed RNA polymerase D subunit 1) (AtNRPD1a) (Nuclear RNA polymerase D 1a) (EC 2.7.7.6) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 3) (Protein SILENCING DEFECTIVE 4) (Protein SILENCING MOVEMENT DEFICIENT 2) (RNA polymerase IV subunit 1a) (POL IV 1a),DNA-directed RNA polymerase V subunit 1 (DNA-directed RNA polymerase D subunit 1b) (AtNRPD1b) (Nuclear RNA polymerase D 1b) (DNA-directed RNA polymerase E subunit 1) (Nuclear RNA polymerase E 1) (EC 2.7.7.6) (Protein DEFECTIVE IN MERISTEM SILENCING 5) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1) (RNA polymerase IV subunit 1) (POL IV 1),DNA-directed RNA polymerase subunit (EC 2.7.7.6),Nuclear RNA polymerase D1A DISRUPTION PHENOTYPE: Blocked in the perpetuation of CNN, CG and CNG methylation in repeated endogenous DNA accompanied by a reduction in long 24-26 nt siRNAs. Transient loss of post-transcriptional gene silencing (PTGS) in young leaves. Reduction of heterochromatin association into chromocenters, coincident with losses in cytosine methylation at pericentromeric 5S gene clusters and AtSN1 retroelements. Altered cell-to-cell movement of siRNAs beyond the vasculature. Release of transposon silencing. Not impaired RNA-directed DNA methylation-dependent (RdDM) silencing. Defective in the maintenance of post-transcriptional RNA silencing. {ECO:0000269|PubMed:10850496, ECO:0000269|PubMed:12198169, ECO:0000269|PubMed:15692015, ECO:0000269|PubMed:15766525, ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:16273107, ECO:0000269|PubMed:16377568, ECO:0000269|PubMed:16839878, ECO:0000269|PubMed:17526749, ECO:0000269|PubMed:17558406, ECO:0000269|PubMed:17785412, ECO:0000269|PubMed:18287047, ECO:0000269|PubMed:18433438, ECO:0000269|PubMed:18467467, ECO:0000269|PubMed:19110459}.,DISRUPTION PHENOTYPE: Blocked in the perpetuation of CNN, CG and CNG methylation in repeated endogenous DNA accompanied by a reduction in 24-nt siRNAs. Reduction of heterochromatin association into chromocenters, coincident with losses in cytosine methylation at pericentromeric 5S gene clusters and AtSN1 retroelements. Impaired RNA-directed DNA methylation-dependent (RdDM) silencing. Defective in the maintenance of post-transcriptional RNA silencing. {ECO:0000269|PubMed:15766525, ECO:0000269|PubMed:15924141, ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:16839878, ECO:0000269|PubMed:18287047, ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:18433438, ECO:0000269|PubMed:19110459, ECO:0000269|PubMed:21150311}. FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity). Largest and catalytic component of RNA polymerase IV which mediates 24-nt short-interfering RNAs (siRNA) accumulation. Implicated in siRNA-directed heterochromatin formation through the action of DCL3 and AGO4, and subsequent DNA methylation-dependent silencing of targeted sequences. Essential component of a self-reinforcing loop coupling de novo DNA methylation to siRNA production. Required for intercellular but not intracellular RNA interference (RNAi) leading to systemic post-transcriptional gene silencing. Involved in the maintenance of post-transcriptional RNA silencing. {ECO:0000250, ECO:0000269|PubMed:10850496, ECO:0000269|PubMed:12198169, ECO:0000269|PubMed:15692015, ECO:0000269|PubMed:15766525, ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:16273107, ECO:0000269|PubMed:16377568, ECO:0000269|PubMed:16839878, ECO:0000269|PubMed:17360559, ECO:0000269|PubMed:17526749, ECO:0000269|PubMed:17558406, ECO:0000269|PubMed:17785412, ECO:0000269|PubMed:18287047, ECO:0000269|PubMed:18433438, ECO:0000269|PubMed:18467467, ECO:0000269|PubMed:19110459}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase V involved in RNA-directed DNA methylation-dependent (RdDM) silencing of endogenous repeated sequences, including transposable elements. Also required for full erasure of methylation when the RNA trigger is withdrawn. Seems also involved in the synthesis of short-interfering RNAs (siRNA). Essential component of a self-reinforcing loop coupling de novo DNA methylation to siRNA production. Involved in the maintenance of post-transcriptional RNA silencing. {ECO:0000269|PubMed:15766525, ECO:0000269|PubMed:15924141, ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:16839878, ECO:0000269|PubMed:17360559, ECO:0000269|PubMed:18287047, ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:18433438, ECO:0000269|PubMed:19110459, ECO:0000269|PubMed:19141635, ECO:0000269|PubMed:21150311, ECO:0000269|PubMed:24463519}.,FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU004279}. 2.7.7.6 162521,218228,161054,196241,127410,135997 DNA-directed RNA polymerase IV subunit 1 (DNA-directed RNA polymerase D subunit 1) (AtNRPD1a) (Nuclear RNA polymerase D 1a) (EC 2.7.7.6) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 3) (Protein SILENCING DEFECTIVE 4) (Protein SILENCING MOVEMENT DEFICIENT 2) (RNA polymerase IV subunit 1a) (POL IV 1a),DNA-directed RNA polymerase V subunit 1 (DNA-directed RNA polymerase D subunit 1b) (AtNRPD1b) (Nuclear RNA polymerase D 1b) (DNA-directed RNA polymerase E subunit 1) (Nuclear RNA polymerase E 1) (EC 2.7.7.6) (Protein DEFECTIVE IN MERISTEM SILENCING 5) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1) (RNA polymerase IV subunit 1) (POL IV 1),DNA-directed RNA polymerase subunit (EC 2.7.7.6),Nuclear RNA polymerase D1A DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase IV complex [GO:0000418]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; gene silencing by RNA [GO:0031047]; long-distance posttranscriptional gene silencing [GO:0010495]; production of siRNA involved in RNA interference [GO:0030422]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase III promoter [GO:0006383],DNA-directed RNA polymerase III complex [GO:0005666]; DNA-directed RNA polymerase V complex [GO:0000419]; nuclear body [GO:0016604]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]; defense response to fungus [GO:0050832]; DNA methylation [GO:0006306]; posttranscriptional gene silencing by RNA [GO:0035194]; production of siRNA involved in RNA interference [GO:0030422]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase III promoter [GO:0006383],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in leaves. {ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:17160640}.,TISSUE SPECIFICITY: Mostly expressed in flowers, and, to a lower extent, in leaves. Present in sperm cells. {ECO:0000269|PubMed:16140984, ECO:0000269|PubMed:17160640, ECO:0000269|PubMed:18667720}. locus:2015163;,locus:2061151; AT1G63020,AT2G40030 DNA-directed RNA Polymerase Os09g0555200 protein (Fragment),DNA-directed RNA polymerase subunit (EC 2.7.7.6) (Fragment),Os04g0572600 protein (Fragment) Q0IZR2,Q0E3V3,A0A0P0WDW6 Q0IZR2_ORYSJ,Q0E3V3_ORYSJ,A0A0P0WDW6_ORYSJ Os09g0555200 OSNPB_090555200,Os02g0152800 Os02g0152800 OSNPB_020152800,Os04g0572600 OSNPB_040572600 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|RuleBase:RU004279}. ENOG411DSV1 Q8LGE0,C0Z394,A0A1P8ASE9 Q8LGE0_ARATH,C0Z394_ARATH,A0A1P8ASE9_ARATH Actin-like ATPase superfamily protein (At1g30540) (Uncharacterized protein At1g30540),AT1G30540 protein (Actin-like ATPase superfamily protein),Actin-like ATPase superfamily protein 36613,29347,32351 Actin-like ATPase superfamily protein (At1g30540) (Uncharacterized protein At1g30540),AT1G30540 protein (Actin-like ATPase superfamily protein),Actin-like ATPase superfamily protein locus:2028135; AT1G30540 N-acetyl-D-glucosamine kinase-like Os07g0147700 protein (Putative Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase) (cDNA, clone: J080310N23, full insert sequence),Os09g0133700 protein (Transcriptional regulators of NagC/XylR (ROK)-like) (cDNA clone:J033067C05, full insert sequence) Q6ZF69,Q6K438 Q6ZF69_ORYSJ,Q6K438_ORYSJ Os07g0147700 OsJ_23091 OSNPB_070147700 P0022E03.18,Os09g0133700 OsJ_28459 OSNPB_090133700 P0406E03.33 ENOG411DSV0 Q5XF59,Q8RXN4,F4JBV0 HIBC4_ARATH,HIBC5_ARATH,F4JBV0_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial (EC 3.1.2.-),3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial (EC 3.1.2.-),ATP-dependent caseinolytic (Clp) protease/crotonase family protein ARA:AT3G60510-MONOMER;,ARA:AT4G31810-MONOMER; Metabolic pathways (01100),beta-Alanine metabolism (00410),Propanoate metabolism (00640),Valine, leucine and isoleucine degradation (00280) 3.1.2.- 44763,45500,47431 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial (EC 3.1.2.-),3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial (EC 3.1.2.-),ATP-dependent caseinolytic (Clp) protease/crotonase family protein mitochondrion [GO:0005739]; 3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860],3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860]; peptidase activity [GO:0008233] locus:2116797;,locus:2103331; AT3G60510,AT4G31810 3-hydroxyisobutyryl-CoA hydrolase-like protein Enoyl-CoA hydratase, putative, expressed (Os10g0552900 protein) (cDNA clone:J013140N04, full insert sequence) (cDNA clone:J023002D14, full insert sequence) Q336U0 Q336U0_ORYSJ LOC_Os10g40540 Os10g0552900 OsJ_32405 OSNPB_100552900 ENOG411DSV3 CCR4-5,CCR4-3,CCR4-6 Q0WKY2,Q9LS39,Q8VYU4,A0A1P8ATB9,A0A1P8BDY9,A0A1P8BDV6,A0A1P8BDX5,A0A1P8ATB7,A0A1P8BDV8,F4J8R6,A0A1I9LNC7 CCR4E_ARATH,CCR4C_ARATH,CCR4F_ARATH,A0A1P8ATB9_ARATH,A0A1P8BDY9_ARATH,A0A1P8BDV6_ARATH,A0A1P8BDX5_ARATH,A0A1P8ATB7_ARATH,A0A1P8BDV8_ARATH,F4J8R6_ARATH,A0A1I9LNC7_ARATH Carbon catabolite repressor protein 4 homolog 5 (CCR4 homolog 5) (EC 3.1.13.4),Carbon catabolite repressor protein 4 homolog 3 (CCR4 homolog 3) (EC 3.1.13.4),Carbon catabolite repressor protein 4 homolog 6 (CCR4 homolog 6) (EC 3.1.13.4),DNAse I-like superfamily protein FUNCTION: Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. {ECO:0000250}. 3.1.13.4 52152,50322,84925,31475,79413,66283,83244,46252,85053,50478,49984 Carbon catabolite repressor protein 4 homolog 5 (CCR4 homolog 5) (EC 3.1.13.4),Carbon catabolite repressor protein 4 homolog 3 (CCR4 homolog 3) (EC 3.1.13.4),Carbon catabolite repressor protein 4 homolog 6 (CCR4 homolog 6) (EC 3.1.13.4),DNAse I-like superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:504956231;,locus:2832132;,locus:2095057; AT1G73875,AT3G18500,AT5G11350 Carbon catabolite repressor protein 4 homolog Endonuclease/exonuclease/phosphatase family protein-like (Os01g0610600 protein),Os06g0264900 protein,Os01g0610600 protein (Fragment) Q5ZE24,A0A0P0WUW9,A0A0P0V543 Q5ZE24_ORYSJ,A0A0P0WUW9_ORYSJ,A0A0P0V543_ORYSJ P0410E03.25-1 Os01g0610600 OSNPB_010610600,Os06g0264900 OSNPB_060264900,Os01g0610600 OSNPB_010610600 ENOG411DSV2 MCCA Q42523 MCCA_ARATH Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (MCCase subunit alpha) (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 1) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) FUNCTION: Biotin-attachment subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism. {ECO:0000250}. MISCELLANEOUS: Temporal and spatial accumulation of the alpha and beta subunits during development at approximately equal molar ratios. PATHWAY: Amino-acid degradation; L-leucine degradation; (S)-3-hydroxy-3-methylglutaryl-CoA from 3-isovaleryl-CoA: step 2/3. ARA:AT1G03090-MONOMER; R-ATH-196780;R-ATH-70895; 6.4.1.4; 6.4.1.4 80451 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (MCCase subunit alpha) (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 1) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) cytosolic ribosome [GO:0022626]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; cobalt ion binding [GO:0050897]; methylcrotonoyl-CoA carboxylase activity [GO:0004485]; leucine catabolic process [GO:0006552] TISSUE SPECIFICITY: In roots, cotyledons, leaves, flowers, ovaries, siliques and embryos. {ECO:0000269|PubMed:10681539}. locus:2007559; AT1G03090 methylcrotonoyl-CoA carboxylase subunit alpha Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (MCCase subunit alpha) (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 1) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha),Os12g0605800 protein (Fragment),Os12g0605800 protein Q2QMG2,A0A0P0YBZ2,A0A0P0YCK7 MCCA_ORYSJ,A0A0P0YBZ2_ORYSJ,A0A0P0YCK7_ORYSJ MCCA Os12g0605800 LOC_Os12g41250 OsJ_36794,Os12g0605800 OSNPB_120605800 FUNCTION: Biotin-attachment subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism. {ECO:0000250}. ENOG411DSV5 QSOX2,QSOX1 Q9ZU40,Q8W4J3,A0A1P8AZ38 QSOX2_ARATH,QSOX1_ARATH,A0A1P8AZ38_ARATH Sulfhydryl oxidase 2 (EC 1.8.3.2) (Quiescin-sulfhydryl oxidase 2) (AtQSOX2),Sulfhydryl oxidase 1 (EC 1.8.3.2) (Quiescin-sulfhydryl oxidase 1) (AtQSOX1),Sulfhydryl oxidase (EC 1.8.3.2) Displays more sensitivity to toxic cations than control plants both as seedlings grown in vitro and as plants grown in soil.,Whereas the initial rate of uptake (less than 20 min) was not significantly affected by the mutation both the uptake at longer times (1 h) and the accumulation after 2 days of both toxic cations correlated inversely with QSO2 function. With K+ and Rb+ uptake the initial rate of uptake was not affected by QSO2 but opposite to the results with toxic cations both the uptake at long times and the accumulation of K+ were directly correlated with QSO2 function. Sensitive to salt, lithium, and, polyamines-R. Serrano-2007 FUNCTION: Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reduction of oxygen to hydrogen peroxide. May contribute to disulfide bond formation in a variety of secreted proteins (By similarity). {ECO:0000250}.,FUNCTION: Sulfhydryl oxidase involved in the regulation of cation homeostasis. Positively regulates shoot accumulation of K(+) and inhibits accumulation of toxic cations. Acts at the level of root K(+) efflux systems involved in xylem loading (root symplast-xylem interface). {ECO:0000269|PubMed:17568770}. MISCELLANEOUS: Plants lacking QSOX1 display more sensitivity to the toxic cations lithium and sodium than wild-type plants. ARA:AT2G01270-MONOMER;,ARA:AT1G15020-MONOMER; R-ATH-114608;R-ATH-6798695; 1.8.3.2; 1.8.3.2 55919,60087,49967 Sulfhydryl oxidase 2 (EC 1.8.3.2) (Quiescin-sulfhydryl oxidase 2) (AtQSOX2),Sulfhydryl oxidase 1 (EC 1.8.3.2) (Quiescin-sulfhydryl oxidase 1) (AtQSOX1),Sulfhydryl oxidase (EC 1.8.3.2) endosome [GO:0005768]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; integral component of Golgi membrane [GO:0030173]; trans-Golgi network [GO:0005802]; flavin-linked sulfhydryl oxidase activity [GO:0016971]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454],cell wall [GO:0005618]; extracellular space [GO:0005615]; integral component of Golgi membrane [GO:0030173]; flavin-linked sulfhydryl oxidase activity [GO:0016971]; protein disulfide isomerase activity [GO:0003756]; thiol oxidase activity [GO:0016972]; cell redox homeostasis [GO:0045454]; positive regulation of potassium ion transport [GO:0043268]; response to cation stress [GO:0043157],integral component of membrane [GO:0016021]; thiol oxidase activity [GO:0016972] TISSUE SPECIFICITY: Highly expressed in roots. {ECO:0000269|PubMed:17568770}. locus:2038771;,locus:2196209; AT2G01270,AT1G15020 sulfhydryl oxidase Sulfhydryl oxidase 1 (EC 1.8.3.2) (Quiescin-sulfhydryl oxidase 1) (OsQSOX1),Os05g0552500 protein Q6AUC6,A0A0P0WQJ7 QSOX1_ORYSJ,A0A0P0WQJ7_ORYSJ QSOX1 Os05g0552500 LOC_Os05g47930 OsJ_19470 OSJNBa0079H23.16,Os05g0552500 OSNPB_050552500 FUNCTION: Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reduction of oxygen to hydrogen peroxide. May contribute to disulfide bond formation in a variety of secreted proteins (By similarity). {ECO:0000250}. ENOG411DSV4 F4P12_390 Q9LFF2 Q9LFF2_ARATH RING/U-box superfamily protein (Uncharacterized protein F4P12_390) 36546 RING/U-box superfamily protein (Uncharacterized protein F4P12_390) cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2084116; AT3G53690 IBR Os11g0300800 protein A0A0P0Y1M0 A0A0P0Y1M0_ORYSJ Os11g0300800 OSNPB_110300800 ENOG411DSV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall Cellulose synthase-like protein D1 (EC 2.4.1.-) (OsCslD1),Os10g0578200 protein (Fragment) Q8W3F9,A0A0P0XY11 CSLD1_ORYSJ,A0A0P0XY11_ORYSJ CSLD1 Os10g0578200 LOC_Os10g42750 OsJ_031301 OSJNBa0035H01.10,Os10g0578200 OSNPB_100578200 DISRUPTION PHENOTYPE: Plants develop short elongated root hair with kinks and swellings along their length. {ECO:0000269|PubMed:17259288}. FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. Required for synthesis of a cell wall polysaccharide essential for root hair elongation, but not initiation. May be the functional ortholog of Arabidopsis CSLD3/KOJAK. {ECO:0000269|PubMed:17259288}. ENOG411EC42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transket_pyr NA NA NA NA NA NA NA ENOG411EC43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Golgi-body localisation protein domain Os03g0681300 protein (Fragment) Q0DPL9 Q0DPL9_ORYSJ Os03g0681300 OSNPB_030681300 ENOG411E0UM MAPKKK13,MAPKKK14 Q9LMK8,O64741,F4HNX7 Q9LMK8_ARATH,O64741_ARATH,F4HNX7_ARATH F10K1.14 protein (Mitogen-activated protein kinase kinase kinase 13),Mitogen-activated protein kinase kinase kinase 14 (Uncharacterized protein At2g30040),Mitogen-activated protein kinase kinase kinase 13 55557,51675,55063 F10K1.14 protein (Mitogen-activated protein kinase kinase kinase 13),Mitogen-activated protein kinase kinase kinase 14 (Uncharacterized protein At2g30040),Mitogen-activated protein kinase kinase kinase 13 cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; chloroplast organization [GO:0009658]; positive regulation of transcription, DNA-templated [GO:0045893]; protein autophosphorylation [GO:0046777]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2007337;,locus:2045658; AT1G07150,AT2G30040 Mitogen-activated protein kinase kinase kinase Os03g0292700 protein (Fragment) A0A0N7KH31 A0A0N7KH31_ORYSJ Os03g0292700 OSNPB_030292700 ENOG411E0UN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0556400 protein (Protein kinase domain containing protein, expressed),Os10g0141300 protein (Putative wall-associated protein kinase) (Serine threonine kinase, putative),Os07g0493800 protein (Wall-associated kinase 2-like protein),Os07g0494800 protein,Os11g0553500 protein (Protein kinase domain containing protein),Os07g0493200 protein (Fragment),Os10g0142600 protein,Os07g0494300 protein,Os10g0143866 protein,Os10g0141200 protein Q2R2M9,Q948C9,Q8LHT1,Q0D6C0,Q2R2P4,A0A0P0X648,A0A0N7KRF3,A0A0P0X6D5,A0A0P0XRM2,A0A0P0XS42 Q2R2M9_ORYSJ,Q948C9_ORYSJ,Q8LHT1_ORYSJ,Q0D6C0_ORYSJ,Q2R2P4_ORYSJ,A0A0P0X648_ORYSJ,A0A0N7KRF3_ORYSJ,A0A0P0X6D5_ORYSJ,A0A0P0XRM2_ORYSJ,A0A0P0XS42_ORYSJ Os11g0556400 LOC_Os11g35274 Os11g0556400 OsJ_34251 OSNPB_110556400,Os10g0141300 LOC_Os10g05170 OsJ_30688 OSJNAa0029P06.11 OSJNBa0034A02.2 OSNPB_100141300,P0038F10.135 Os07g0493800 OsJ_24315 OSNPB_070493800,Os07g0494800 Os07g0494800 OSNPB_070494800,Os11g0553500 LOC_Os11g35120 Os11g0553500 OsJ_34243 OSNPB_110553500,Os07g0493200 OSNPB_070493200,Os10g0142600 OSNPB_100142600,Os07g0494300 OSNPB_070494300,Os10g0143866 OSNPB_100143866,Os10g0141200 OSNPB_100141200 ENOG411E0UH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411E0UI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family Os01g0847800 protein C7IWJ1 C7IWJ1_ORYSJ Os01g0847800 Os01g0847800 OSNPB_010847800 ENOG411E0UK Q9ZT78,A0A1P8B4J1,F4JG84,A0A1P8B631 Q9ZT78_ARATH,A0A1P8B4J1_ARATH,F4JG84_ARATH,A0A1P8B631_ARATH Ankyrin repeat family protein (Uncharacterized protein AT4g03500) (Uncharacterized protein F9H3.13),Ankyrin repeat family protein 71969,69484,68806,65275 Ankyrin repeat family protein (Uncharacterized protein AT4g03500) (Uncharacterized protein F9H3.13),Ankyrin repeat family protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031] locus:2128736;,locus:2128781; AT4G03500,AT4G03460 ANK NA NA NA NA NA NA NA ENOG411E0UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Os01g0330200 protein (Putative cysteine protease),Os01g0347500 protein (Os01g0348000 protein) (Fragment),Os01g0347600 protein Q9ASM1,A0A0P0V277,A0A0N7KCX2 Q9ASM1_ORYSJ,A0A0P0V277_ORYSJ,A0A0N7KCX2_ORYSJ Os01g0330200 OSNPB_010330200 P0489E06.3 P0554D10.27,Os01g0348000 Os01g0347500 OSNPB_010347500 OSNPB_010348000,Os01g0347600 OSNPB_010347600 ENOG411E0UP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411DX9M RPS3 Q95749 RT03_ARATH Ribosomal protein S3, mitochondrial 64876 Ribosomal protein S3, mitochondrial mitochondrion [GO:0005739]; ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] ATMG00090 Ribosomal protein S3 Ribosomal protein S3, mitochondrial,Ribosomal protein S3 P46773,Q7JAJ0 RT03_ORYSJ,Q7JAJ0_ORYSJ RPS3,rps3 ENOG411DX9K NAT12 Q3E7D0,A0A1P8AXK2,A8MS07 NAT12_ARATH,A0A1P8AXK2_ARATH,A8MS07_ARATH Nucleobase-ascorbate transporter 12 (AtNAT12),Nucleobase-ascorbate transporter 12 R-ATH-196836; 76674,79566,58006 Nucleobase-ascorbate transporter 12 (AtNAT12),Nucleobase-ascorbate transporter 12 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; adenine transmembrane transporter activity [GO:0015207]; guanine transmembrane transporter activity [GO:0015208]; solute:cation symporter activity [GO:0015294]; uracil transmembrane transporter activity [GO:0015210]; adenine import across plasma membrane [GO:0098702]; guanine import across plasma membrane [GO:0098710]; hypoxanthine transport [GO:0035344]; uracil import across plasma membrane [GO:0098721],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16982705}. locus:2042036; AT2G27810 nucleobase-ascorbate transporter Nucleobase-ascorbate transporter-like protein (Os01g0857500 protein) (cDNA clone:J013164P20, full insert sequence) Q5N911 Q5N911_ORYSJ Os01g0857500 Os01g0857500 OSNPB_010857500 P0683F02.12 ENOG411DX9J T12C14_60 Q9LZQ4,A0A1I9LSH2 Q9LZQ4_ARATH,A0A1I9LSH2_ARATH Carbohydrate-binding-like fold (Uncharacterized protein T12C14_60),Carbohydrate-binding-like fold 132944,129467 Carbohydrate-binding-like fold (Uncharacterized protein T12C14_60),Carbohydrate-binding-like fold endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774],integral component of membrane [GO:0016021] locus:2096049; AT3G62360 nodal modulator Os01g0300600 protein (Fragment) A0A0P0V1K7 A0A0P0V1K7_ORYSJ Os01g0300600 OSNPB_010300600 ENOG411DX9I PAO5 Q9SU79 PAO5_ARATH Probable polyamine oxidase 5 (AtPAO5) (EC 1.5.3.-) FUNCTION: Flavoenzyme that catalyzes the oxidation of the secondary amino group of polyamines. {ECO:0000250}. R-ATH-141334;R-ATH-351200; 1.5.3.17; 1.5.3.- 58686 Probable polyamine oxidase 5 (AtPAO5) (EC 1.5.3.-) cytoplasm [GO:0005737]; thermospermine oxidase activity [GO:1990534]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510] locus:2134393; AT4G29720 Polyamine oxidase Os01g0710200 protein (Polyamine oxidase-like) Q5NAI7 Q5NAI7_ORYSJ Os01g0710200 Os01g0710200 OsJ_03212 OSNPB_010710200 P0456F08.19 ENOG411DX9H Q9SVF5,Q84VX1 Q9SVF5_ARATH,Q84VX1_ARATH Glycosyl hydrolase family 10 protein (Uncharacterized protein AT4g38300) (Uncharacterized protein F22I13.70),At4g38650 (Glycosyl hydrolase family 10 protein) (Uncharacterized protein At4g38650) ARA:AT4G38300-MONOMER;,ARA:AT4G38650-MONOMER; 32103,63470 Glycosyl hydrolase family 10 protein (Uncharacterized protein AT4g38300) (Uncharacterized protein F22I13.70),At4g38650 (Glycosyl hydrolase family 10 protein) (Uncharacterized protein At4g38650) hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2121788;,locus:2121174; AT4G38300,AT4G38650 glycosyl hydrolase family 10 protein Os03g0243700 protein (Fragment) A0A0P0VVK2 A0A0P0VVK2_ORYSJ Os03g0243700 OSNPB_030243700 ENOG411DX9G CBP60E,CBP60F F4IPM3,F4JR57,A0A1P8B0C9,F4JR58 CB60E_ARATH,CB60F_ARATH,A0A1P8B0C9_ARATH,F4JR58_ARATH Calmodulin-binding protein 60 E,Calmodulin-binding protein 60 F,Calmodulin-binding protein FUNCTION: Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes. {ECO:0000250|UniProtKB:F4K2R6}. 67969,63685,68373,61255 Calmodulin-binding protein 60 E,Calmodulin-binding protein 60 F,Calmodulin-binding protein nucleus [GO:0005634]; calmodulin binding [GO:0005516]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; response to stress [GO:0006950]; transcription, DNA-templated [GO:0006351],calmodulin binding [GO:0005516]; response to stress [GO:0006950] locus:2061112;,locus:2126679; AT2G24300,AT4G31000 Calmodulin binding protein-like NA NA NA NA NA NA NA ENOG411DX9F DCR Q9FF86 DCR_ARATH BAHD acyltransferase DCR (EC 2.3.1.-) (Protein DEFECTIVE IN CUTICULAR RIDGES) (Protein PERMEABLE LEAVES 3) DISRUPTION PHENOTYPE: Smaller rosettes, collapsed or tangled trichomes, postgenital fusions between the rosette leaves and flower buds, fusions between sepals, altered cuticle permeability, loss of cuticular folding in petals, abnormal flower and silique development, altered seeds surface, defective mucilage extrusion and semisterility. Increased susceptibility to salinity, osmotic and water deprivation stresses. {ECO:0000269|PubMed:14675439, ECO:0000269|PubMed:19626137, ECO:0000269|PubMed:19828672}. Embryo defective; Globular-D. Meinke-2004 FUNCTION: Required for incorporation of 9(10),16-dihydroxy-hexadecanoic acid into cutin. {ECO:0000269|PubMed:19828672}. ARA:AT5G23940-MONOMER; 2.3.1.- 53514 BAHD acyltransferase DCR (EC 2.3.1.-) (Protein DEFECTIVE IN CUTICULAR RIDGES) (Protein PERMEABLE LEAVES 3) cytoplasm [GO:0005737]; cytosol [GO:0005829]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; cutin biosynthetic process [GO:0010143]; localization [GO:0051179]; plant epidermis morphogenesis [GO:0090626]; trichome morphogenesis [GO:0010090] DEVELOPMENTAL STAGE: Expressed in all 3 inner integumenta layers and 2 outer integument layers in young seeds, but specifically restricted to the inner integumenta in mature seeds. {ECO:0000269|PubMed:19828672}. TISSUE SPECIFICITY: Expressed in root caps and lateral root emerging sites, in trichomes, in epidermis in stems, sepals and anther filaments, and in pollen grains and torpedo stage seeds. {ECO:0000269|PubMed:19828672}. locus:2172813; AT5G23940 BAHD acyltransferase Os08g0562500 protein (Putative AER) (cDNA clone:006-312-A03, full insert sequence),Os08g0562500 protein (Fragment) Q6YYV8,A0A0P0XJ94 Q6YYV8_ORYSJ,A0A0P0XJ94_ORYSJ Os08g0562500 Os08g0562500 OSNPB_080562500 P0543D10.12 P0604E01.52,Os08g0562500 OSNPB_080562500 ENOG411DX9E O04491 PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 68547 Putative pentatricopeptide repeat-containing protein At1g09680 intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2024367; AT1G09680 Pentatricopeptide repeat-containing protein Os04g0463300 protein (Fragment) Q0JCL4 Q0JCL4_ORYSJ Os04g0463300 Os04g0463300 OSNPB_040463300 ENOG411DX9D Q8W498 Q8W498_ARATH ARM repeat superfamily protein (At4g27640) (Uncharacterized protein At4g27640; T29A15.130) 115232 ARM repeat superfamily protein (At4g27640) (Uncharacterized protein At4g27640; T29A15.130) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; NLS-bearing protein import into nucleus [GO:0006607]; protein import into nucleus, translocation [GO:0000060]; ribosomal protein import into nucleus [GO:0006610] locus:2137717; AT4G27640 Importin beta-2 subunit family protein HEAT repeat family protein, expressed (Os03g0261900 protein) (cDNA clone:J023105A03, full insert sequence),Os03g0261900 protein (Fragment),Os03g0261950 protein Q10NR5,A0A0P0VVV1,A0A0P0VVN2 Q10NR5_ORYSJ,A0A0P0VVV1_ORYSJ,A0A0P0VVN2_ORYSJ Os03g0261900 LOC_Os03g15540 OSNPB_030261900,Os03g0261900 OSNPB_030261900,Os03g0261950 OSNPB_030261950 ENOG411DX9C SOG1 Q6NQK2 NAC8_ARATH SUPPRESSOR OF GAMMA RESPONSE 1 (NAC domain-containing protein 8) (ANAC008) (Protein SOG1) (SUPPRESSOR OF GAMMA RADIATION 1) FUNCTION: Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. 50289 SUPPRESSOR OF GAMMA RESPONSE 1 (NAC domain-containing protein 8) (ANAC008) (Protein SOG1) (SUPPRESSOR OF GAMMA RADIATION 1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA damage checkpoint [GO:0000077]; regulation of meiotic nuclear division [GO:0040020]; response to gamma radiation [GO:0010332]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. locus:2031170; AT1G25580 NAC domain-containing protein Os06g0267500 protein (Putative NAM1 protein) Q5Z9V2 Q5Z9V2_ORYSJ Os06g0267500 Os06g0267500 OSNPB_060267500 P0528B02.24 ENOG411DX9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Strictosidine synthase Os08g0175000 protein (Putative male fertility protein),Os08g0442200 protein (Putative male fertility protein) (cDNA clone:J033044F17, full insert sequence),Os08g0442200 protein (Fragment),Os01g0698200 protein Q6Z4U1,Q6Z8S2,A0A0P0XGD7,A0A0P0V705 Q6Z4U1_ORYSJ,Q6Z8S2_ORYSJ,A0A0P0XGD7_ORYSJ,A0A0P0V705_ORYSJ Os08g0175000 OJ1134_B10.3 OSJNBa0054L03.34 OSNPB_080175000,Os08g0442200 OSNPB_080442200 P0528B09.45 P0708B04.1,Os08g0442200 OSNPB_080442200,Os01g0698200 OSNPB_010698200 ENOG411DX9A LAC6 Q9ZPY2,A0A1P8B1C0 LAC6_ARATH,A0A1P8B1C0_ARATH Laccase-6 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 6) (Diphenol oxidase 6) (Urishiol oxidase 6),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000250}.,FUNCTION: Lignin degradation and detoxification of lignin-derived products. {ECO:0000256|RuleBase:RU361119}. ARA:AT2G46570-MONOMER; 1.10.3.2 63901,54300 Laccase-6 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 6) (Diphenol oxidase 6) (Urishiol oxidase 6),Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274],apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; lignin catabolic process [GO:0046274] TISSUE SPECIFICITY: Predominantly expressed in the inflorescence stem, but not in siliques. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2039944; AT2G46570 Multicopper oxidase NA NA NA NA NA NA NA ENOG411DX9Z Q9M9T1 Q9M9T1_ARATH F14L17.7 protein (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) 28180 F14L17.7 protein (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) hydrolase activity [GO:0016787]; metabolic process [GO:0008152] locus:2012617; AT1G14310 Haloacid dehalogenase-like hydrolase domain-containing protein Haloacid dehalogenase-like hydrolase-like protein (Os08g0169800 protein) Q6Z026 Q6Z026_ORYSJ Os08g0169800 Os08g0169800 OsJ_26195 OSNPB_080169800 P0458D06.22 P0462E11.46 ENOG411DX9Y Q6NLZ9,Q682J5,F4HYC2,A0A1P8AUF1,F4HYC0 Q6NLZ9_ARATH,Q682J5_ARATH,F4HYC2_ARATH,A0A1P8AUF1_ARATH,F4HYC0_ARATH ATP-dependent protease La (LON) domain protein (At1g35340),ATP-dependent protease La (LON) domain protein (Uncharacterized protein At1g35340),ATP-dependent protease La (LON) domain protein 23519,35320,35666,27642,34751 ATP-dependent protease La (LON) domain protein (At1g35340),ATP-dependent protease La (LON) domain protein (Uncharacterized protein At1g35340),ATP-dependent protease La (LON) domain protein peptidase activity [GO:0008233],chloroplast [GO:0009507]; intracellular [GO:0005622]; peptidase activity [GO:0008233]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209] locus:2206732; AT1G35340 ATP-dependent protease La (LON) domain Os11g0219000 protein C7J9B2 C7J9B2_ORYSJ Os11g0219000 OSNPB_110219000 ENOG411DX9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0044K18.21 protein (Os04g0479100 protein) (cDNA clone:J023092D06, full insert sequence) Q7XK24 Q7XK24_ORYSJ Os04g0479100 OsJ_15195 OSJNBa0044K18.21 OSNPB_040479100 ENOG411DX9W Q6NKT6,A0A1P8AMX6,A0A1P8AMX4 Q6NKT6_ARATH,A0A1P8AMX6_ARATH,A0A1P8AMX4_ARATH GPI mannosyltransferase 2 (EC 2.4.1.-) FUNCTION: Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis. {ECO:0000256|RuleBase:RU363112}. PATHWAY: Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis. {ECO:0000256|RuleBase:RU363112}. R-ATH-162710; 2.4.1.- 55456,44102,43043 GPI mannosyltransferase 2 (EC 2.4.1.-) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mannosyltransferase complex [GO:0031501]; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [GO:0004584]; mannosyltransferase activity [GO:0000030]; GPI anchor biosynthetic process [GO:0006506],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [GO:0004584]; GPI anchor biosynthetic process [GO:0006506] locus:2008970; AT1G11880 Mannosyltransferase GPI mannosyltransferase 2 (EC 2.4.1.-) Q2QQC9 Q2QQC9_ORYSJ LOC_Os12g31480 Os12g0498700 OSNPB_120498700 FUNCTION: Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis. {ECO:0000256|RuleBase:RU363112}. ENOG411DX9V PLDZETA1,PLDP1 Q9LRZ5,A0A1I9LQ38,A0A1I9LQ42,A0A1I9LQ40 PLDZ1_ARATH,A0A1I9LQ38_ARATH,A0A1I9LQ42_ARATH,A0A1I9LQ40_ARATH Phospholipase D zeta 1 (PLDzeta1) (EC 3.1.4.4) (Phospholipase D p1) (AtPLDp1) (Phospholipase D1 PHOX and PX-containing domain protein),Phospholipase D P1 DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions (PubMed:16384909). No effect on root hair patterning or root hair growth (PubMed:16384909). No effect on the concentration of phospholipids and galactolipids in phosphorus-starved roots (PubMed:16891548). Pldzeta1 and pldzeta2 double mutants show a smaller decrease in phosphatidylcholine and a smaller increase in digalactosyldiacylglycerol in phosphorus-starved roots (PubMed:16891548). Pldzeta1 and pldzeta2 double mutants show reduced primary root elongation and increased lateral root elongation under low-phosphate conditions (PubMed:16384909). {ECO:0000269|PubMed:16384909, ECO:0000269|PubMed:16891548}. Under limited phosphate primary root elongation is retarded and lateral roots are longer with respect to wild type. FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Phosphatidylcholine-selective (PubMed:11891260). Regulates root-hair morphogenesis (PubMed:12775839). Contributes to the supply of inorganic phosphorus for cell metabolism and diacylglycerol moieties for galactolipid synthesis in phosphorus-starved roots (PubMed:16891548). Involved in root elongation during phosphate limitation (PubMed:16384909). {ECO:0000269|PubMed:11891260, ECO:0000269|PubMed:12775839, ECO:0000269|PubMed:16384909, ECO:0000269|PubMed:16891548}. ARA:AT3G16785-MONOMER;MetaCyc:AT3G16785-MONOMER; R-ATH-1483166;R-ATH-2029485;R-ATH-6798695; 3.1.4.4; 3.1.4.4 124505,112239,117106,129682 Phospholipase D zeta 1 (PLDzeta1) (EC 3.1.4.4) (Phospholipase D p1) (AtPLDp1) (Phospholipase D1 PHOX and PX-containing domain protein),Phospholipase D P1 cytoplasmic vesicle [GO:0031410]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phosphatidylinositol binding [GO:0035091]; phospholipase D activity [GO:0004630]; lipid catabolic process [GO:0016042]; root development [GO:0048364],catalytic activity [GO:0003824]; phosphatidylinositol binding [GO:0035091] TISSUE SPECIFICITY: Expressed in inflorescences, flowers, siliques, stems, leaves, and roots. Highest expression in roots. {ECO:0000269|PubMed:16384909}. locus:2086750; AT3G16785 phospholipase d Os05g0358700 protein A0A0P0WL78 A0A0P0WL78_ORYSJ Os05g0358700 OSNPB_050358700 ENOG411DX9U LCAT3 Q93V61,Q0WVZ1 LCAT3_ARATH,Y3330_ARATH Phospholipase A(1) LCAT3 (EC 3.1.1.32) (Lecithin-cholesterol acyltransferase-like 3),Putative metallophosphoesterase At3g03305 (EC 3.1.-.-) FUNCTION: Hydrolyzes the sn-1 acylester bond of phospholipids. Phosphatidylcholine, phosphatidylethanolamine and phosphatidic acid can be used as substrates. Weak activity with lysophosphatidylcholine and no activity with tripalmitoylglycerol and cholesteryl oleate. Seems to have a preference for unsaturated fatty acids at the sn-1 position. {ECO:0000269|PubMed:15355352}. MISCELLANEOUS: Unaffected by calcium. ARA:AT3G03310-MONOMER;MetaCyc:AT3G03301-MONOMER; 3.1.1.32; 3.1.1.32,3.1.-.- 50349,84747 Phospholipase A(1) LCAT3 (EC 3.1.1.32) (Lecithin-cholesterol acyltransferase-like 3),Putative metallophosphoesterase At3g03305 (EC 3.1.-.-) endoplasmic reticulum [GO:0005783]; organelle membrane [GO:0031090]; 1-acyl-2-lysophosphatidylserine acylhydrolase activity [GO:0052740]; O-acyltransferase activity [GO:0008374]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; phosphatidylserine 1-acylhydrolase activity [GO:0052739]; lipid catabolic process [GO:0016042],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872] locus:2099609;,locus:505006328; AT3G03310,AT3G03305 Inherit from KOG: Dicer-like endonuclease involved in cleaving double- stranded RNA in the RNA interference (RNAi) pathway. Produces 21 to 25 bp dsRNAs (siRNAs) which target the selective destruction of homologous RNAs leading to sequence-specific suppression of gene expression called post-transcriptional gene silencing (PTGS). Part of a broad host defense response against viral infection and transposons NA NA NA NA NA NA NA ENOG411DX9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Os10g0406300 protein Q0IXW1 Q0IXW1_ORYSJ Os10g0406300 OSNPB_100406300 ENOG411DX9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os09g0272900 protein (Putative RPS2) (cDNA clone:J013100B16, full insert sequence),Os09g0272900 protein (Fragment) Q6H4Y5,A0A0P0XJA5 Q6H4Y5_ORYSJ,A0A0P0XJA5_ORYSJ Os09g0272900 OJ1031_C12.11 OsJ_28628 OSNPB_090272900 P0515A04.36,Os09g0272900 OSNPB_090272900 ENOG411DX9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os02g0243700 protein,Os07g0268800 protein,Os07g0270800 protein,Os05g0544600 protein,Os10g0144501 protein,Os08g0149800 protein (Fragment),Os07g0269400 protein,Os07g0269500 protein,Os08g0149850 protein,Os10g0144000 protein,Os07g0269600 protein,Os10g0143200 protein,Os10g0144300 protein,Os08g0149333 protein,Os02g0246500 protein Q6ESV5,Q6Z5S4,Q8LIL8,Q65X41,A0A0P0XS70,A0A0P0XBZ3,A0A0N7KN87,A0A0P0X4J2,A0A0P0XBY2,A0A0N7KRF4,A0A0P0X514,A0A0P0XSD3,A0A0P0XRI0,A0A0P0XBP3,A0A0P0VH58 Q6ESV5_ORYSJ,Q6Z5S4_ORYSJ,Q8LIL8_ORYSJ,Q65X41_ORYSJ,A0A0P0XS70_ORYSJ,A0A0P0XBZ3_ORYSJ,A0A0N7KN87_ORYSJ,A0A0P0X4J2_ORYSJ,A0A0P0XBY2_ORYSJ,A0A0N7KRF4_ORYSJ,A0A0P0X514_ORYSJ,A0A0P0XSD3_ORYSJ,A0A0P0XRI0_ORYSJ,A0A0P0XBP3_ORYSJ,A0A0P0VH58_ORYSJ Os02g0243700 OsJ_06046 OSNPB_020243700 P0503B05.29,Os07g0268800 OsJ_23797 OSJNBa0033J14.4 OSNPB_070268800,OJ1001_C01.107 Os07g0270800 OsJ_23801 OSNPB_070270800 P0685B06.29,Os05g0544600 OJ1206_C08.9 OJ1288_A07.18 OsJ_19415 OSNPB_050544600,Os10g0144501 OSNPB_100144501,Os08g0149800 OSNPB_080149800,Os07g0269400 OSNPB_070269400,Os07g0269500 OSNPB_070269500,Os08g0149850 OSNPB_080149850,Os10g0144000 OSNPB_100144000,Os07g0269600 OSNPB_070269600,Os10g0143200 OSNPB_100143200,Os10g0144300 OSNPB_100144300,Os08g0149333 OSNPB_080149333,Os02g0246500 OSNPB_020246500 ENOG411DX9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os06g0166100 protein (Putative far-red impaired response protein) Q5VRR4 Q5VRR4_ORYSJ Os06g0166100 Os06g0166100 OSJNBa0015I14.33 OSNPB_060166100 P0680A03.7 ENOG411DX9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase NA NA NA NA NA NA NA ENOG411DX99 NBR1 Q9SB64 NBR1_ARATH Protein NBR1 homolog (AtNBR1) (At4g24690) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show enhanced sensitivity to heat, oxidative, salt, and drought stresses. {ECO:0000269|PubMed:23341779}. FUNCTION: Autophagic substrate degraded in the vacuole by non-selective autophagy. Requires ATG8 protein expression to be recognized as an autophagic substrate (PubMed:21606687). Acts probably as a receptor for autophagosomal degradation of ubiquitinated proteins. Targets ubiquitinated protein aggregates derived from denatured or damaged non-native proteins generated under stress conditions (PubMed:23341779). Functions additively with the E3 ubiquitin-protein ligase CHIP for autophagosomal degradation of proteotoxic agregates formed under stress conditions (PubMed:24497840). {ECO:0000269|PubMed:21606687, ECO:0000269|PubMed:23341779, ECO:0000269|PubMed:24497840}. 76186 Protein NBR1 homolog (AtNBR1) (At4g24690) cytoplasm [GO:0005737]; vacuole [GO:0005773]; ubiquitin binding [GO:0043130]; zinc ion binding [GO:0008270]; autophagy [GO:0006914]; protein polymerization [GO:0051258]; protein transport [GO:0015031] locus:2121899; AT4G24690 ubiquitin-associated (UBA) TS-N domain-containing protein octicosapeptide Phox Bemp1 (PB1) domain-containing protein Os02g0593700 protein (Putative ubiquitin-associated (UBA) protein) (cDNA clone:J013072E12, full insert sequence),Os02g0593700 protein (Fragment) Q6ZH84,A0A0P0VL26,A0A0P0VL54 Q6ZH84_ORYSJ,A0A0P0VL26_ORYSJ,A0A0P0VL54_ORYSJ Os02g0593700 Os02g0593700 OJ1067_B01.6-1 OsJ_07348 OSJNBa0016G10.28-1 OSNPB_020593700,Os02g0593700 OSNPB_020593700 ENOG411DX98 HIPP09 Q9FLU5,A0A1P8BFC0,F4KH65,F4KH66 HIP9_ARATH,A0A1P8BFC0_ARATH,F4KH65_ARATH,F4KH66_ARATH Heavy metal-associated isoprenylated plant protein 9 (AtHIP09),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 35350,25740,35221,35065 Heavy metal-associated isoprenylated plant protein 9 (AtHIP09),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:2153969; AT5G24580 Heavy-metal-associated domain Os03g0861400 protein A0A0P0W6H8 A0A0P0W6H8_ORYSJ Os03g0861400 OSNPB_030861400 ENOG411DX97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Protein phosphatase 2C 50 (OsPP2C50) (EC 3.1.3.16) (ABI1-like protein 3) (OsABI-LIKE3) (OsABIL3),Os03g0586166 protein Q6L5H6,A0A0P0W0K1 P2C50_ORYSJ,A0A0P0W0K1_ORYSJ PP2C50 ABIL3 Os05g0537400 LOC_Os05g46040 OJ1741_B01.18 OSJNBa0052K01.2,Os03g0586166 OSNPB_030586166 FUNCTION: Protein phosphatase involved in abscisic acid (ABA) signaling. Together with PYL3 and SAPK10, may form an ABA signaling module involved in stress response. {ECO:0000269|PubMed:28827170}. ENOG411DX96 F13M14.30,SPD1 Q9CAE6,A0A1P8AWK9,A0A1P8AWP1,F4J3R7,A8MRU5,F4HQ47 Q9CAE6_ARATH,A0A1P8AWK9_ARATH,A0A1P8AWP1_ARATH,F4J3R7_ARATH,A8MRU5_ARATH,F4HQ47_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein F13M14.30),p-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein High penetrance of seedling lethality; Cotyledons and upper hypocotyl are mostly albino with small clusters of green cells-R. Hangarter-2011 60023,43481,74247,75061,59623,73735 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein F13M14.30),p-loop containing nucleoside triphosphate hydrolases superfamily protein,P-loop containing nucleoside triphosphate hydrolases superfamily protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787],chloroplast [GO:0009507]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2075825;,locus:2032617; AT3G10420,AT1G73170 ATPase family associated with various cellular activities (AAA) ATPase-like (Os06g0155600 protein),Os07g0187400 protein Q5VMB3,A0A0P0X317 Q5VMB3_ORYSJ,A0A0P0X317_ORYSJ Os06g0155600 Os06g0155600 OSJNBa0085L11.28 OSNPB_060155600 P0046E09.6,Os07g0187400 OSNPB_070187400 ENOG411DX95 gene1000 P94032,Q8L3T0,F4IW09 P94032_ARATH,Q8L3T0_ARATH,F4IW09_ARATH Gene1000 protein (PLAC8 family protein) (Uncharacterized protein At5g51400) (Uncharacterized protein At5g51400; MFG13.11),PLAC8 family protein (Uncharacterized protein At2g45010),PLAC8 family protein 27016,27264,22102 Gene1000 protein (PLAC8 family protein) (Uncharacterized protein At5g51400) (Uncharacterized protein At5g51400; MFG13.11),PLAC8 family protein (Uncharacterized protein At2g45010),PLAC8 family protein Golgi apparatus [GO:0005794],integral component of membrane [GO:0016021] locus:2163700;,locus:2055617; AT5G51400,AT2G45010 cell number regulator 6-like Os03g0101800 protein (cDNA clone:006-209-E05, full insert sequence),Os03g0101800 protein (cDNA clone:006-202-D11, full insert sequence) (cDNA clone:006-206-H10, full insert sequence) (cDNA clone:J033121P22, full insert sequence),Os10g0560200 protein Q10T46,Q10T45,Q0IVQ1 Q10T46_ORYSJ,Q10T45_ORYSJ,Q0IVQ1_ORYSJ Os03g0101800 LOC_Os03g01210 Os03g0101800 OSNPB_030101800,Os03g0101800 LOC_Os03g01210 OsJ_09060 OSNPB_030101800,OSJNBa0042H09.16 Os10g0560200 OsJ_32451 OSNPB_100560200 ENOG411DX94 Q93VK9 Q93VK9_ARATH Kinetochore protein (Uncharacterized protein At3g48210) FUNCTION: Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division. {ECO:0000305|PubMed:29356153}. 35578 Kinetochore protein (Uncharacterized protein At3g48210) locus:2100479; AT3G48210 Chromosome segregation protein Spc25 Os01g0973200 protein A0A0P0VDD4 A0A0P0VDD4_ORYSJ Os01g0973200 OSNPB_010973200 ENOG411DX93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 NA NA NA NA NA NA NA ENOG411DX92 Q9LNC1 Q9LNC1_ARATH Cysteine proteinases superfamily protein (F9P14.12 protein) 37770 Cysteine proteinases superfamily protein (F9P14.12 protein) apoplast [GO:0048046]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] locus:2038515; AT1G06260 Pept_C1 NA NA NA NA NA NA NA ENOG411DX91 PIGA Q94BX4 PIGA_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit A (EC 2.4.1.198) (GlcNAc-PI synthesis protein) (Phosphatidylinositol-glycan biosynthesis class A protein) DISRUPTION PHENOTYPE: Defective in pollen germination and pollen tube growth. {ECO:0000269|PubMed:14671020}. Male gametophyte defective; Rare embryo defective (inferred)-D. Twell-2004 FUNCTION: Necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, the very early intermediate in GPI-anchor biosynthesis (Probable). Required for pollen germination and pollen tube growth (PubMed:14671020). {ECO:0000269|PubMed:14671020, ECO:0000305}. PATHWAY: Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis. {ECO:0000305}. ARA:AT3G45100-MONOMER; R-ATH-162710; 2.4.1.198 50424 Phosphatidylinositol N-acetylglucosaminyltransferase subunit A (EC 2.4.1.198) (GlcNAc-PI synthesis protein) (Phosphatidylinositol-glycan biosynthesis class A protein) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]; transferase activity, transferring glycosyl groups [GO:0016757]; GPI anchor biosynthetic process [GO:0006506]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and pollen grains. {ECO:0000269|PubMed:14671020}. locus:2096875; AT3G45100 phosphatidylinositol N-acetylglucosaminyltransferase Os07g0270950 protein (cDNA, clone: J075173E02, full insert sequence) B7F9D1 B7F9D1_ORYSJ Os07g0270950 OsJ_23803 OSNPB_070270950 ENOG411DX90 Q9SSQ1,Q9SSQ0,Q8L9X1,F4HV36,F4HV37,B3H483,A0A1P8AUU6,A0A1P8AUY3,F4I823,B3H753 Q9SSQ1_ARATH,Q9SSQ0_ARATH,Q8L9X1_ARATH,F4HV36_ARATH,F4HV37_ARATH,B3H483_ARATH,A0A1P8AUU6_ARATH,A0A1P8AUY3_ARATH,F4I823_ARATH,B3H753_ARATH Alpha/beta-Hydrolases superfamily protein (F6D8.31),Alpha/beta-Hydrolases superfamily protein (F6D8.32 protein),Alpha/beta-Hydrolases superfamily protein (Putative lysophospholipase) (Uncharacterized protein At5g20060),Alpha/beta-Hydrolases superfamily protein ARA:GQT-1171-MONOMER; 26211,25569,26728,14360,20840,19558,30727,29529,21163,19524 Alpha/beta-Hydrolases superfamily protein (F6D8.31),Alpha/beta-Hydrolases superfamily protein (F6D8.32 protein),Alpha/beta-Hydrolases superfamily protein (Putative lysophospholipase) (Uncharacterized protein At5g20060),Alpha/beta-Hydrolases superfamily protein cytoplasm [GO:0005737]; carboxylic ester hydrolase activity [GO:0052689]; palmitoyl-(protein) hydrolase activity [GO:0008474]; protein depalmitoylation [GO:0002084],hydrolase activity [GO:0016787] locus:2035154;,locus:2035174;,locus:2147650;,locus:2202395;,locus:2826810;,locus:2008271; AT1G52470,AT1G52460,AT5G20060,AT1G47780,AT1G47786,AT1G51300 acyl-protein thioesterase Os01g0175000 protein,Os01g0175000 protein (Putative lysophospholipase 2) (cDNA clone:001-039-G08, full insert sequence) (cDNA clone:J033060D21, full insert sequence) B9ETE4,Q94E46 B9ETE4_ORYSJ,Q94E46_ORYSJ Os01g0175000 OsJ_00575 OSNPB_010175000,Os01g0175000 OSJNBa0089K24.29-1 OSNPB_010175000 ENOG411EC4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os01g0921900 protein,Os07g0210100 protein (Fragment),Os01g0922050 protein,Os07g0211000 protein (Fragment) Q5JJI0,A0A0P0X468,A0A0P0VC60,A0A0P0X3Q1 Q5JJI0_ORYSJ,A0A0P0X468_ORYSJ,A0A0P0VC60_ORYSJ,A0A0P0X3Q1_ORYSJ B1793G04.31 Os01g0921900 OSNPB_010921900,Os07g0210100 OSNPB_070210100,Os01g0922050 OSNPB_010922050,Os07g0211000 OSNPB_070211000 ENOG411EC4E MTH12.10 Q9FN94,A0A1P8BEN9,A0A1P8BEK6,F4KJ91 RLK7_ARATH,A0A1P8BEN9_ARATH,A0A1P8BEK6_ARATH,F4KJ91_ARATH Receptor-like protein kinase At5g59670 (EC 2.7.10.1) (EC 2.7.11.1) (Leucine-rich repeat receptor-like protein kinase At5g59670),Leucine-rich repeat protein kinase family protein FUNCTION: Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. {ECO:0000269|PubMed:19124768}. 2.7.10.1; 2.7.11.1 97032,94782,92050,94468 Receptor-like protein kinase At5g59670 (EC 2.7.10.1) (EC 2.7.11.1) (Leucine-rich repeat receptor-like protein kinase At5g59670),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein tyrosine kinase activity [GO:0004714],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2174294;,locus:2174284; AT5G59670,AT5G59660 STYKc NA NA NA NA NA NA NA ENOG411EC4U NFD4 F4I9E1 NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4 DISRUPTION PHENOTYPE: Failure of fusion of the polar nuclei during megagametogenesis. {ECO:0000269|PubMed:16698901}. Male and female gametophyte defective; Embryo defective (inferred)-G. Drews-2006 FUNCTION: Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus (PubMed:16698901). {ECO:0000269|PubMed:16698901}. 64060 Protein NUCLEAR FUSION DEFECTIVE 4 integral component of membrane [GO:0016021]; karyogamy [GO:0000741]; polar nucleus fusion [GO:0010197]; response to salt stress [GO:0009651]; transport [GO:0006810] locus:2206169; AT1G31470 Nodulin-like NA NA NA NA NA NA NA ENOG411EBC4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os07g0422700 protein A0A0P0X579 A0A0P0X579_ORYSJ Os07g0422700 OSNPB_070422700 ENOG411EBCD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8JQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA heat shock factor-binding protein 1-like NA NA NA NA NA NA NA ENOG411EMRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin containing amine oxidoreductase Os09g0368500 protein,Os09g0368200 protein (Polyamine oxidase 6),Os03g0193400 protein (Fragment) Q0J290,A0A0P0XM10,A0A0P0VU81 Q0J290_ORYSJ,A0A0P0XM10_ORYSJ,A0A0P0VU81_ORYSJ Os09g0368500 OSNPB_090368500,Os09g0368200 OSNPB_090368200,Os03g0193400 OSNPB_030193400 ENOG411EMRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin containing amine oxidoreductase Os04g0560500 protein A0A0P0WDT4 A0A0P0WDT4_ORYSJ Os04g0560500 OSNPB_040560500 ENOG411EMRR ZDS1 Q38893 ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic (EC 1.3.5.6) (9,9'-di-cis-zeta-carotene desaturase) (Carotene 7,8-desaturase) Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: Plays a crucial role in plant growth and development. Is essential for the biosynthesis of carotenoids. Carotenoids are involved in different physiological processes, including coloration, photoprotection, biosynthesis of abscisic acid (ABA) and chloroplast biogenesis (PubMed:17468780, PubMed:24907342). Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene) (PubMed:9914519). {ECO:0000269|PubMed:17468780, ECO:0000269|PubMed:24907342, ECO:0000269|PubMed:9914519}. PATHWAY: Carotenoid biosynthesis; lycopene biosynthesis. ARA:AT3G04870-MONOMER;MetaCyc:AT3G04870-MONOMER; 1.3.5.6 61634 Zeta-carotene desaturase, chloroplastic/chromoplastic (EC 1.3.5.6) (9,9'-di-cis-zeta-carotene desaturase) (Carotene 7,8-desaturase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chromoplast [GO:0009509]; 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity [GO:0052887]; 9,9'-dicis-carotene:quinone oxidoreductase activity [GO:0052886]; carotene 7,8-desaturase activity [GO:0016719]; 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene [GO:0052889]; carotenoid biosynthetic process [GO:0016117] locus:2114789; AT3G04870 zeta-carotene desaturase Zeta-carotene desaturase (EC 1.3.5.6) (9,9'-di-cis-zeta-carotene desaturase),Zeta-carotene desaturase (EC 1.3.5.6) (9,9'-di-cis-zeta-carotene desaturase) (Fragment),Os07g0204900 protein (Fragment) Q0D7W4,A0A0P0X4D0,A0A0P0X3Z3 Q0D7W4_ORYSJ,A0A0P0X4D0_ORYSJ,A0A0P0X3Z3_ORYSJ Os07g0204900 Os07g0204900 OSNPB_070204900,Os07g0204900 OSNPB_070204900 FUNCTION: Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. {ECO:0000256|RuleBase:RU362008}. ENOG411EMRS PDS Q07356 PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic (EC 1.3.5.5) (Phytoene dehydrogenase) Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway. {ECO:0000269|PubMed:9914519}. PATHWAY: Carotenoid biosynthesis; lycopene biosynthesis. 1.3.5.5; 1.3.5.5 62964 15-cis-phytoene desaturase, chloroplastic/chromoplastic (EC 1.3.5.5) (Phytoene dehydrogenase) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chromoplast [GO:0009509]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; phytoene dehydrogenase activity [GO:0016166]; carotenoid biosynthetic process [GO:0016117] DEVELOPMENTAL STAGE: Ripening fruit. locus:2129515; AT4G14210 This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene Phytoene dehydrogenase, chloroplastic/chromoplastic (EC 1.3.99.-) (Phytoene desaturase) Q0DUI8 CRTI_ORYSJ PDS PDS1 Os03g0184000 LOC_Os03g08570 OSJNBa0032G08.5 FUNCTION: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. ENOG411EMRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein Ubiquitin-60S ribosomal protein L40-1 [Cleaved into: Ubiquitin; 60S ribosomal protein L40-1 (CEP52)],Ubiquitin-60S ribosomal protein L40-2 [Cleaved into: Ubiquitin; 60S ribosomal protein L40-2 (CEP52)] P0CH34,P0CH35 RL40A_ORYSJ,RL40B_ORYSJ Ub-CEP52-1 UBQ1 Os03g0234200 LOC_Os03g13170 OJ1175C11.2 OsJ_30399,Ub-CEP52-2 UBQ2 Os09g0568400 LOC_Os09g39500 OJ1003_C09.10-1 FUNCTION: Ubiquitin: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: 60S ribosomal protein L40-1: component of the 60S subunit of the ribosome.,FUNCTION: Ubiquitin: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). {ECO:0000250}.; FUNCTION: 60S ribosomal protein L40-2: component of the 60S subunit of the ribosome. MISCELLANEOUS: Ubiquitin is generally synthesized as a polyubiquitin precursor with tandem head to tail repeats. Often, there is one to three additional amino acids after the last repeat, removed in the mature protein. Alternatively, ubiquitin extension protein is synthesized as a single copy of ubiquitin fused to a ribosomal protein (either L40 or S27A) or to an ubiquitin-related protein (either RUB1 or RUB2). Following translation, extension protein is cleaved from ubiquitin. ENOG411EMRH CARA Q9LVW7,A8MRD8 CARA_ARATH,A8MRD8_ARATH Carbamoyl-phosphate synthase small chain, chloroplastic (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) (Protein VENOSA 6),Carbamoyl phosphate synthetase A DISRUPTION PHENOTYPE: Reduced plant size. Reticulate leaves with reduced number of palissade mesophyll cells. {ECO:0000269|PubMed:21265888}. Small, pale green, curled leaves; Heterozygotes: Intermediate phenotype-J. Micol-2011 FUNCTION: Involved in arginine biosynthesis. Required for mesophyll development. {ECO:0000269|PubMed:21265888}. MISCELLANEOUS: The ven6-1 phenotype is rescued by exogenous application of citrulline, an arginine precursor. {ECO:0000305|PubMed:21265888}. PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3. ARA:AT3G27740-MONOMER; 6.3.5.5 47059,38948 Carbamoyl-phosphate synthase small chain, chloroplastic (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) (Protein VENOSA 6),Carbamoyl phosphate synthetase A carbamoyl-phosphate synthase complex [GO:0005951]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [GO:0004088]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; 'de novo' UMP biosynthetic process [GO:0044205]; arginine biosynthetic process [GO:0006526]; cellular response to phosphate starvation [GO:0016036]; glutamine metabolic process [GO:0006541]; urea cycle [GO:0000050],carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [GO:0004088]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; glutamine metabolic process [GO:0006541] locus:2089149; AT3G27740 Carbamoyl-phosphate synthase Carbamoyl-phosphate synthase small chain, chloroplastic (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain),Os02g0708100 protein,Os02g0708100 protein (Fragment) Q6YV23,A0A0P0VNP5,A0A0P0VNL4,A0A0P0VNK1 CARA_ORYSJ,A0A0P0VNP5_ORYSJ,A0A0P0VNL4_ORYSJ,A0A0P0VNK1_ORYSJ CARA Os02g0708100 LOC_Os02g47850 OSJNBb0060O16.25,Os02g0708100 OSNPB_020708100 FUNCTION: Involved in arginine biosynthesis. {ECO:0000250}. ENOG411EMRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HAT Os08g0113200 protein (Putative RNA recognition motif (RRM)-containing protein) Q6ZCC0 Q6ZCC0_ORYSJ Os08g0113200 OSNPB_080113200 P0498H04.30 ENOG411EMRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin containing amine oxidoreductase NA NA NA NA NA NA NA ENOG411EMRN PAO2 Q9SKX5 PAO2_ARATH Probable polyamine oxidase 2 (AtPAO2) (EC 1.5.3.-) (Amine oxidase 1) FUNCTION: Flavoenzyme that catalyzes the oxidation of the secondary amino group of polyamines. {ECO:0000250}. ARA:AT2G43020-MONOMER; 1.5.3.17; 1.5.3.- 54321 Probable polyamine oxidase 2 (AtPAO2) (EC 1.5.3.-) (Amine oxidase 1) peroxisome [GO:0005777]; polyamine oxidase activity [GO:0046592]; polyamine catabolic process [GO:0006598] TISSUE SPECIFICITY: Highly expressed in flowers and siliques. Also found in leaf and stem and in low levels in cotyledons, roots and in seedlings. locus:2053723; AT2G43020 Polyamine oxidase OSJNBa0053K19.6 protein (OSJNBb0085C12.17 protein) (Os04g0623300 protein),Os04g0623300 protein (Fragment) Q7X809,A0A0P0WF44,A0A0P0WF31 Q7X809_ORYSJ,A0A0P0WF44_ORYSJ,A0A0P0WF31_ORYSJ Os04g0623300 OsJ_16215 OSJNBa0053K19.6 OSJNBb0085C12.17 OSNPB_040623300,Os04g0623300 OSNPB_040623300 ENOG411EMR0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO NA NA NA NA NA NA NA ENOG411EMR3 Q8GZ14,Q9LM88,A4FVS4,F4I2D0 Q8GZ14_ARATH,Q9LM88_ARATH,A4FVS4_ARATH,F4I2D0_ARATH DNA-binding bromodomain-containing protein (Uncharacterized protein At1g76380/F15M4_12),At1g20670 (DNA-binding bromodomain-containing protein) (F2D10.15),At1g76380 (DNA-binding bromodomain-containing protein),DNA-binding bromodomain-containing protein 64851,72956,64908,64793 DNA-binding bromodomain-containing protein (Uncharacterized protein At1g76380/F15M4_12),At1g20670 (DNA-binding bromodomain-containing protein) (F2D10.15),At1g76380 (DNA-binding bromodomain-containing protein),DNA-binding bromodomain-containing protein DNA binding [GO:0003677],plasmodesma [GO:0009506]; DNA binding [GO:0003677] locus:2030422;,locus:2014594; AT1G76380,AT1G20670 Bromodomain-containing protein Os09g0550000 protein (cDNA clone:001-116-D08, full insert sequence) (cDNA clone:J013119O19, full insert sequence) Q69MN4 Q69MN4_ORYSJ Os09g0550000 OJ1210_A07.24 OSNPB_090550000 P0489D11.5 ENOG411EMR6 Q8VY17 Q8VY17_ARATH DNA-binding bromodomain-containing protein (Uncharacterized protein At5g55040) 103415 DNA-binding bromodomain-containing protein (Uncharacterized protein At5g55040) DNA binding [GO:0003677] locus:2151948; AT5G55040 Bromodomain-containing protein NA NA NA NA NA NA NA ENOG411E66W PRA1B6 Q9LYQ4 PR1B6_ARATH PRA1 family protein B6 (AtPRA1.B6) (Prenylated Rab acceptor 3) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 23138 PRA1 family protein B6 (AtPRA1.B6) (Prenylated Rab acceptor 3) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in hypocotyls, roots, lateral roots, lateral root caps, columella cells, leaves and stomata. {ECO:0000269|PubMed:18583532}. locus:2169364; AT5G07110 prenylated Rab NA NA NA NA NA NA NA ENOG411EE88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase S28 NA NA NA NA NA NA NA ENOG411EE8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EE8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DS1X APM1 Q8VZH2 APM1_ARATH Aminopeptidase M1 (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) DISRUPTION PHENOTYPE: Loss-of-function mutants show irregular, uncoordinated cell divisions throughout embryogenesis, affecting the shape and number of cotyledons and the hypophysis, and is seedling lethal at 5 days after germination due to root growth arrest. Quiescent center and cell cycle markers show no signals in apm1-1 knockdown mutants, and the ground tissue specifiers SHORTROOT and SCARECROW are misexpressed or mislocalized. apm1 mutants have multiple, fused cotyledons and hypocotyls with enlarged epidermal cells with cell adhesion defects. apm1 alleles show defects in gravitropism and auxin transport. {ECO:0000269|PubMed:19531600}. Embryo defective; Cotyledon-A. Murphy-2007 FUNCTION: Metallopeptidase that binds to the auxin transport inhibitor N-1-naphthylphthalamic acid (NPA). Required for embryonic and seedling development as well as cell cycle progression. Homodimerization is required to proper localization and activity. May play a negative role in the regulation of PIN auxin transport proteins. {ECO:0000269|PubMed:11891249, ECO:0000269|PubMed:19531600, ECO:0000269|PubMed:20154099, ECO:0000269|PubMed:23065197}. R-ATH-983168; 3.4.11.2 98179 Aminopeptidase M1 (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; organelle membrane [GO:0031090]; plasma membrane [GO:0005886]; aminopeptidase activity [GO:0004177]; metalloaminopeptidase activity [GO:0070006]; N-1-naphthylphthalamic acid binding [GO:0010013]; peptide binding [GO:0042277]; zinc ion binding [GO:0008270]; auxin polar transport [GO:0009926]; peptide catabolic process [GO:0043171] DEVELOPMENTAL STAGE: Expression starts at 3 days and peaks at 5 days. After, expression levels remain constant from 7 to 10 days. During embryogenesis, expressed first at the site of root meristem formation, then in the epidernal and ground tissue, root meristem and suspensor. In the mature embryo, expressed in the vascular primordia throughout the hypocotyl/root axis. {ECO:0000269|PubMed:11891249, ECO:0000269|PubMed:19531600}. TISSUE SPECIFICITY: Ubiquitous with preferential expression in 5 days-old seedlings, roots, young flowers, upper inflorescence stems, and rosette leaves. {ECO:0000269|PubMed:11891249, ECO:0000269|PubMed:19531600}. locus:2125904; AT4G33090 Puromycin-sensitive Aminopeptidase M1-A (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase),Os02g0218200 protein (Fragment) Q6Z6L4,A0A0P0VGI4 APM1A_ORYSJ,A0A0P0VGI4_ORYSJ Os02g0218200 LOC_Os02g12650 OsJ_05906 P0027A02.7,Os02g0218200 OSNPB_020218200 ENOG411DS1Y ATG1B,ATG1A,ATG1C F4JBP3,Q94C95,F4IRW0,A0A178VAV0,A0A1P8AYS6,A8MR56,F4IX14,A0A1I9LQJ6 ATG1B_ARATH,ATG1A_ARATH,ATG1C_ARATH,A0A178VAV0_ARATH,A0A1P8AYS6_ARATH,A8MR56_ARATH,F4IX14_ARATH,A0A1I9LQJ6_ARATH Serine/threonine-protein kinase ATG1b (EC 2.7.11.-) (Autophagy-related protein 1b) (AtAPG1b),Serine/threonine-protein kinase ATG1a (EC 2.7.11.-) (Autophagy-related protein 1a) (AtAPG1a),Serine/threonine-protein kinase ATG1c (EC 2.7.11.-) (Autophagy-related protein 1c) (AtAPG1c),Protein kinase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21984698}. FUNCTION: Serine/threonine protein kinase involved in autophagy. The ATG1-ATG13 protein kinase complex regulates downstream events required for autophagosome enclosure and/or vacuolar delivery. {ECO:0000250|UniProtKB:Q94C95}.,FUNCTION: Serine/threonine protein kinase involved in autophagy in a nutritional condition-dependent manner. The ATG1-ATG13 protein kinase complex regulates downstream events required for autophagosome enclosure and/or vacuolar delivery. Becomes a target of autophagy under nutrient starvation. Connects autophagy to plant nutritional status. {ECO:0000269|PubMed:21984698}. 2.7.11.- 78798,69602,81815,58577,49309,78898,65164,58676 Serine/threonine-protein kinase ATG1b (EC 2.7.11.-) (Autophagy-related protein 1b) (AtAPG1b),Serine/threonine-protein kinase ATG1a (EC 2.7.11.-) (Autophagy-related protein 1a) (AtAPG1a),Serine/threonine-protein kinase ATG1c (EC 2.7.11.-) (Autophagy-related protein 1c) (AtAPG1c),Protein kinase superfamily protein autophagosome [GO:0005776]; cytoplasmic vesicle [GO:0031410]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; autophagy [GO:0006914]; protein transport [GO:0015031],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],kinase activity [GO:0016301] locus:2079527;,locus:2065680;,locus:2084440; AT3G53930,AT3G61960,AT2G37840 kinase family Os03g0268200 protein,Os03g0268200 protein (Protein kinase domain containing protein, expressed),Os03g0122000 protein (Protein kinase domain containing protein, expressed),Os03g0268200 protein (Fragment),Os03g0122000 protein (Fragment) C7IZT6,Q10NJ0,Q10SI6,A0A0P0VVW5,A0A0P0VSG8,A0A0N7KH01 C7IZT6_ORYSJ,Q10NJ0_ORYSJ,Q10SI6_ORYSJ,A0A0P0VVW5_ORYSJ,A0A0P0VSG8_ORYSJ,A0A0N7KH01_ORYSJ Os03g0268200 OSNPB_030268200,Os03g0268200 LOC_Os03g16130 OSNPB_030268200,Os03g0122000 LOC_Os03g02980 Os03g0122000 OsJ_09218 OSNPB_030122000,Os03g0122000 OSNPB_030122000 ENOG411DS1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0591500 protein (Fragment) A0A0P0VL45 A0A0P0VL45_ORYSJ Os02g0591500 OSNPB_020591500 ENOG411DS1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxisomal membrane anchor protein (Pex14p) conserved region Os01g0107000 protein (PEX14-like) (cDNA clone:J013088I21, full insert sequence),Os01g0107000 protein Q657X8,A0A0P0UX24 Q657X8_ORYSJ,A0A0P0UX24_ORYSJ P0005A05.25-1 P0482C06.3-1 Os01g0107000 OsJ_00059 OSNPB_010107000,Os01g0107000 OSNPB_010107000 ENOG411DS1U PER31,PER63 Q9LHA7,Q9FL16 PER31_ARATH,PER63_ARATH Peroxidase 31 (Atperox P31) (EC 1.11.1.7) (ATP41),Peroxidase 63 (Atperox P63) (EC 1.11.1.7) (ATP26a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT3G28200-MONOMER;,ARA:AT5G40150-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35303,36120 Peroxidase 31 (Atperox P31) (EC 1.11.1.7) (ATP41),Peroxidase 63 (Atperox P63) (EC 1.11.1.7) (ATP26a) cytosol [GO:0005829]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2098308;,locus:2173757; AT3G28200,AT5G40150 peroxidase Peroxidase (EC 1.11.1.7) Q67VC4 Q67VC4_ORYSJ Os06g0237600 prx76 Os06g0237600 OSJNBa0052G07.1 OSJNBa0068B06.10 OSNPB_060237600 ENOG411DS1P Q8GZA1,Q8RX35,F4HYN6,F4HZC9 Q8GZA1_ARATH,Q8RX35_ARATH,F4HYN6_ARATH,F4HZC9_ARATH Arginine-glutamic acid dipeptide repeat protein (At2g47820) (Uncharacterized protein At2g47820),Arginine-glutamic acid dipeptide repeat protein (Uncharacterized protein At1g09050),Uncharacterized protein,Arginine-glutamic acid dipeptide repeat protein 90864,102369,103796,102433 Arginine-glutamic acid dipeptide repeat protein (At2g47820) (Uncharacterized protein At2g47820),Arginine-glutamic acid dipeptide repeat protein (Uncharacterized protein At1g09050),Uncharacterized protein,Arginine-glutamic acid dipeptide repeat protein DNA binding [GO:0003677],membrane [GO:0016020]; DNA binding [GO:0003677] locus:2043313;,locus:2036019;,locus:2011050;,locus:2036059; AT2G47820,AT1G09050,AT1G55050,AT1G09040 NA Os07g0568200 protein,Os03g0346900 protein (Fragment) Q7F1H9,A0A0P0VXE6 Q7F1H9_ORYSJ,A0A0P0VXE6_ORYSJ OJ1092_A07.126 Os07g0568200 OSNPB_070568200,Os03g0346900 OSNPB_030346900 ENOG411DS1I Q8RYE9 GPPL3_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 (EC 3.1.3.-) 3.1.3.- 27497 Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 (EC 3.1.3.-) chloroplast [GO:0009507]; metal ion binding [GO:0046872]; phosphatase activity [GO:0016791]; dephosphorylation [GO:0016311] locus:505006285; AT2G33255 hydrolase Os02g0816100 protein (cDNA clone:001-014-C08, full insert sequence) (cDNA clone:006-302-H01, full insert sequence) Q0DWG5 Q0DWG5_ORYSJ Os02g0816100 Os02g0816100 OSNPB_020816100 ENOG411DS1G PUR7 P38025 PUR7_ARATH Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (EC 6.3.2.6) (SAICAR synthetase) PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 1/2. ARA:AT3G21110-MONOMER; 6.3.2.6 46063 Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (EC 6.3.2.6) (SAICAR synthetase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [GO:0004639]; 'de novo' IMP biosynthetic process [GO:0006189]; response to auxin [GO:0009733] locus:2092975; AT3G21110 Phosphoribosylaminoimidazole-succinocarboxamide synthase Os09g0467100 protein (Putative succinoaminoimidazolecarboximide ribonucleotide synthetase) (cDNA clone:001-115-F04, full insert sequence) Q6YXG8 Q6YXG8_ORYSJ Os09g0467100 Os09g0467100 OJ1005_D12.38 OSNPB_090467100 ENOG411DS1A PMI1,PMI2,DIN9 Q9M884,Q9FZH5,A0A1P8ARS3 MPI1_ARATH,MPI2_ARATH,A0A1P8ARS3_ARATH Mannose-6-phosphate isomerase 1 (EC 5.3.1.8) (Phosphohexomutase 1) (Phosphomannose isomerase 1) (PMI1) (Protein MATERNAL EFFECT EMBRYO ARREST 31),Mannose-6-phosphate isomerase 2 (EC 5.3.1.8) (Phosphohexomutase 2) (Phosphomannose isomerase 2) (PMI2) (Protein DARK INDUCIBLE 9),Mannose-6-phosphate isomerase (EC 5.3.1.8) DISRUPTION PHENOTYPE: Endosperm development arrested. {ECO:0000269|PubMed:15634699}. FUNCTION: Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. Involved in the ascorbic acid (AsA) biosynthesis. Required during the endosperm development. {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:18755683}.,FUNCTION: Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. {ECO:0000269|PubMed:18755683}. PATHWAY: Nucleotide-sugar biosynthesis; GDP-alpha-D-mannose biosynthesis; alpha-D-mannose 1-phosphate from D-fructose 6-phosphate: step 1/2. ARA:AT3G02570-MONOMER;MetaCyc:AT3G02570-MONOMER;,ARA:AT1G67070-MONOMER;MetaCyc:AT1G67070-MONOMER; R-ATH-446205; 5.3.1.8; Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 5.3.1.8 48566,49248,38388 Mannose-6-phosphate isomerase 1 (EC 5.3.1.8) (Phosphohexomutase 1) (Phosphomannose isomerase 1) (PMI1) (Protein MATERNAL EFFECT EMBRYO ARREST 31),Mannose-6-phosphate isomerase 2 (EC 5.3.1.8) (Phosphohexomutase 2) (Phosphomannose isomerase 2) (PMI2) (Protein DARK INDUCIBLE 9),Mannose-6-phosphate isomerase (EC 5.3.1.8) cytoplasm [GO:0005737]; mannose-6-phosphate isomerase activity [GO:0004476]; zinc ion binding [GO:0008270]; carbohydrate metabolic process [GO:0005975]; cell wall mannoprotein biosynthetic process [GO:0000032]; embryo development ending in seed dormancy [GO:0009793]; GDP-mannose biosynthetic process [GO:0009298]; protein glycosylation [GO:0006486]; response to cadmium ion [GO:0046686]; response to cobalt ion [GO:0032025]; response to L-ascorbic acid [GO:0033591]; response to light stimulus [GO:0009416]; response to zinc ion [GO:0010043],cytoplasm [GO:0005737]; mannose-6-phosphate isomerase activity [GO:0004476]; zinc ion binding [GO:0008270]; cell wall mannoprotein biosynthetic process [GO:0000032]; GDP-mannose biosynthetic process [GO:0009298]; L-ascorbic acid biosynthetic process [GO:0019853]; protein glycosylation [GO:0006486]; response to absence of light [GO:0009646]; response to cadmium ion [GO:0046686]; response to DDT [GO:0046680]; response to L-ascorbic acid [GO:0033591]; response to sucrose [GO:0009744]; response to zinc ion [GO:0010043],mannose-6-phosphate isomerase activity [GO:0004476]; zinc ion binding [GO:0008270]; carbohydrate metabolic process [GO:0005975]; GDP-mannose biosynthetic process [GO:0009298] DEVELOPMENTAL STAGE: Expressed at the last stage of senescence in old leaves. {ECO:0000269|PubMed:11240919, ECO:0000269|PubMed:16100230}. TISSUE SPECIFICITY: Constitutively expressed in both vegetative and reproductive organs under normal growth conditions (at protein level). {ECO:0000269|PubMed:18755683}.,TISSUE SPECIFICITY: Not expressed in any organs under light (at protein level). {ECO:0000269|PubMed:18755683}. locus:2076864;,locus:2019748; AT3G02570,AT1G67070 mannose-6-phosphate isomerase Mannose-6-phosphate isomerase (EC 5.3.1.8),Os11g0600900 protein (Fragment) Q9FTR6,A0A0P0Y4U5 Q9FTR6_ORYSJ,A0A0P0Y4U5_ORYSJ Os01g0127900 Os01g0127900 OSNPB_010127900 P0409B08.25,Os11g0600900 OSNPB_110600900 ENOG411DS1C Q6NQ19,A0A1P8B9X3 Q6NQ19_ARATH,A0A1P8B9X3_ARATH At5g25170 (PPPDE putative thiol peptidase family protein) (Uncharacterized protein At5g25170),PPPDE putative thiol peptidase family protein 24690,19793 At5g25170 (PPPDE putative thiol peptidase family protein) (Uncharacterized protein At5g25170),PPPDE putative thiol peptidase family protein plasma membrane [GO:0005886] locus:2146970; AT5G25170 Pfam:DUF862 NA NA NA NA NA NA NA ENOG411DY2R EXO70H1,EXO70H2 Q8VY27,O80625 E70H1_ARATH,O80625_ARATH Exocyst complex component EXO70H1 (AtExo70h1) (Exocyst subunit Exo70 family protein H1),Exocyst subunit exo70 family protein H2 (Uncharacterized protein At2g39380) DISRUPTION PHENOTYPE: No discernible phenotype in normal conditions (PubMed:21199889). Enhanced susceptibility to the bacterial pathogen P.syringae pv. maculicola (PubMed:21199889). {ECO:0000269|PubMed:21199889}. FUNCTION: Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole. Regulates autophagosome formation and autophagy-related Golgi-independent import into the vacuole (By similarity). Involved in defense responses to pathogenic bacteria (e.g. P.syringae pv. maculicola) (PubMed:21199889). {ECO:0000250|UniProtKB:Q9FGH9, ECO:0000269|PubMed:21199889}. R-ATH-5620916; 71962,72180 Exocyst complex component EXO70H1 (AtExo70h1) (Exocyst subunit Exo70 family protein H1),Exocyst subunit exo70 family protein H2 (Uncharacterized protein At2g39380) cytosol [GO:0005829]; endomembrane system [GO:0012505]; exocyst [GO:0000145]; membrane [GO:0016020]; nucleus [GO:0005634]; phagocytic vesicle [GO:0045335]; vesicle [GO:0031982]; defense response [GO:0006952]; exocytosis [GO:0006887]; positive regulation of defense response to bacterium [GO:1900426]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; response to molecule of bacterial origin [GO:0002237],exocyst [GO:0000145]; exocytosis [GO:0006887] DEVELOPMENTAL STAGE: In roots, localized in elongation and root hair zones. In flowers, observed in carpels. {ECO:0000269|PubMed:20943851}. TISSUE SPECIFICITY: Mostly expressed in roots and, to a lower extent, in leaves, flower buds and siliques. {ECO:0000269|PubMed:20943851}. locus:2100656;,locus:2039787; AT3G55150,AT2G39380 exocyst subunit exo70 family protein NA NA NA NA NA NA NA ENOG411DY2Z T4D2.70 Q9SCP7 Q9SCP7_ARATH AT3g53140/T4D2_70 (Caffeic acid O-methyltransferase-like protein) (O-methyltransferase family protein) ARA:AT3G53140-MONOMER; R-ATH-209931; 39688 AT3g53140/T4D2_70 (Caffeic acid O-methyltransferase-like protein) (O-methyltransferase family protein) O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438] locus:2102038; AT3G53140 caffeic acid Os02g0823400 protein (Putative O-diphenol-O-methyl transferase) (cDNA clone:001-012-F05, full insert sequence) Q6K9X3 Q6K9X3_ORYSJ Os02g0823400 OJ1063_D06.1 OJ1136_C04.9 OsJ_08933 OSNPB_020823400 ENOG411DY2F Q94K73 SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase) (PheRS) FUNCTION: Is responsible for the charging of tRNA(Phe) with phenylalanine in mitochondrial translation. {ECO:0000250}. ARA:AT3G58140-MONOMER; 6.1.1.20 49252 Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase) (PheRS) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; phenylalanine-tRNA ligase activity [GO:0004826]; tRNA binding [GO:0000049]; phenylalanyl-tRNA aminoacylation [GO:0006432] locus:2085455; AT3G58140 Phenylalanyl-tRNA synthetase Os12g0533700 protein (Phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed) Q2QPD4 Q2QPD4_ORYSJ Os12g0533700 LOC_Os12g34860 OSNPB_120533700 ENOG411DY2C PID2 Q64FQ2 PID2_ARATH Protein kinase PINOID 2 (EC 2.7.11.1) (Protein kinase AGC1-10) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19075219}. FUNCTION: Serine/threonine-protein kinase involved in the regulation of auxin signaling. Plays a minor role in the regulation of cellular auxin efflux and cotyledon organogenesis. {ECO:0000269|PubMed:19075219}. 2.7.11.1 59294 Protein kinase PINOID 2 (EC 2.7.11.1) (Protein kinase AGC1-10) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; auxin-activated signaling pathway [GO:0009734]; cotyledon development [GO:0048825]; intracellular signal transduction [GO:0035556] DEVELOPMENTAL STAGE: Expressed throughout the embryogenesis in the provascular tissues. {ECO:0000269|PubMed:19075219}. locus:2043813; AT2G26700 protein kinase PINOID 2-like Protein kinase PINOID 2 (EC 2.7.11.1) (Protein PID-like) (OsPIDlike),Os01g0174700 protein (Fragment) Q94E49,A0A0P0UYW0 PID2_ORYSJ,A0A0P0UYW0_ORYSJ PID2 Os01g0174700 LOC_Os01g07940 OSJNBa0089K24.26,Os01g0174700 OSNPB_010174700 FUNCTION: Serine/threonine-protein kinase involved in the regulation of auxin signaling. {ECO:0000250}. ENOG411DY2B Q6ID84,F4IH88 Q6ID84_ARATH,F4IH88_ARATH At2g46100 (Nuclear transport factor 2 (NTF2) family protein),Nuclear transport factor 2 (NTF2) family protein 26840,25686 At2g46100 (Nuclear transport factor 2 (NTF2) family protein),Nuclear transport factor 2 (NTF2) family protein locus:2062989; AT2G46100 Uncharacterized conserved protein (DUF2358) Os04g0578200 protein A0A0N7KJJ9 A0A0N7KJJ9_ORYSJ Os04g0578200 OSNPB_040578200 ENOG411DY29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain protein (Os06g0142100 protein),Os06g0138700 protein (Fragment),Os06g0139000 protein (Fragment) Q5VSC4,A0A0P0WS39,A0A0P0WS48 Q5VSC4_ORYSJ,A0A0P0WS39_ORYSJ,A0A0P0WS48_ORYSJ Os06g0142100 OSNPB_060142100 P0535G04.14,Os06g0138700 OSNPB_060138700,Os06g0139000 OSNPB_060139000 ENOG411DY28 Q5XVA8 Y3905_ARATH Uncharacterized protein At3g49055 55492 Uncharacterized protein At3g49055 locus:504955632; AT3G49055 NA Os08g0559800 protein A0A0P0XJC2 A0A0P0XJC2_ORYSJ Os08g0559800 OSNPB_080559800 ENOG411E6E6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0794100 protein (Fragment) A0A0P0V965 A0A0P0V965_ORYSJ Os01g0794100 OSNPB_010794100 ENOG411E6EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0521200 protein (Os04g0521300 protein) C7J0W9 C7J0W9_ORYSJ Os04g0521300 Os04g0521200 OSNPB_040521300 ENOG411E6EX RIC6,RIC7 Q1PF35,Q1G3K8,A0A1P8B8E3 RIC6_ARATH,RIC7_ARATH,A0A1P8B8E3_ARATH CRIB domain-containing protein RIC6 (ROP-interactive CRIB motif-containing protein 6) (Target of ROP protein RIC6),CRIB domain-containing protein RIC7 (ROP-interactive CRIB motif-containing protein 7) (Target of ROP protein RIC7),PAK-box/P21-Rho-binding family protein "FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Is involved in pollen tube growth regulation through its interaction with ARAC11/ROP1. {ECO:0000269|PubMed:11752391}.,FUNCTION: Functions as downstream effector of Rho-related GTP binding proteins of the ""Rho of Plants"" (ROPs) family. Participates in the propagation of ROP GTPase signals in specific cellular responses. Functions as downstream effector of active ARAC4/ROP2 GTPase which is involved in the prevention of excessive stomatal opening upon light stimulation. Is involved in pollen tube growth regulation through its interaction with ARAC11/ROP1. {ECO:0000269|PubMed:11752391, ECO:0000269|PubMed:18178769}." MISCELLANEOUS: Over-expression of RIC6 in tobacco germinating pollen reduces pollen tube elongation. {ECO:0000305|PubMed:11752391}.,MISCELLANEOUS: Over-expression of RIC7 in tobacco germinating pollen reduces pollen tube elongation. {ECO:0000305|PubMed:11752391}. 23346,23754,20010 CRIB domain-containing protein RIC6 (ROP-interactive CRIB motif-containing protein 6) (Target of ROP protein RIC6),CRIB domain-containing protein RIC7 (ROP-interactive CRIB motif-containing protein 7) (Target of ROP protein RIC7),PAK-box/P21-Rho-binding family protein apical plasma membrane [GO:0016324]; pollen tube growth [GO:0009860]; regulation of growth [GO:0040008],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; regulation of growth [GO:0040008]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in flowers and pollen. {ECO:0000269|PubMed:11752391}.,TISSUE SPECIFICITY: Expressed in roots, leaves, guard cells, stems, flowers, siliques and pollen. {ECO:0000269|PubMed:11752391, ECO:0000269|PubMed:18178769}. locus:2054820;,locus:1009023333; AT2G20430,AT4G28556 ROP-interactive CRIB motif-containing protein 6 NA NA NA NA NA NA NA ENOG411E6EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0347900 protein B9FEJ8 B9FEJ8_ORYSJ Os04g0347900 OsJ_14359 OSNPB_040347900 ENOG411E6EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E6EP ERF020 Q9C9I8 ERF20_ARATH Ethylene-responsive transcription factor ERF020 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 15695 Ethylene-responsive transcription factor ERF020 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2825359; AT1G71520 Transcription factor NA NA NA NA NA NA NA ENOG411DYA2 Q9SI32 Q9SI32_ARATH Phospholipid scramblase 44122 Phospholipid scramblase membrane [GO:0016020]; mitochondrion [GO:0005739]; plastid [GO:0009536]; phospholipid scramblase activity [GO:0017128] locus:2044968; AT2G04940 altered inheritance rate of mitochondria protein 25-like Phospholipid scramblase,Phospholipid scramblase (Fragment) Q7X7A8,A0A0P0VH05 Q7X7A8_ORYSJ,A0A0P0VH05_ORYSJ Os04g0599400 Os04g0599400 OsJ_16024 OSJNBa0083N12.4 OSNPB_040599400,Os02g0238500 OSNPB_020238500 ENOG411DYA3 TTN10 Q6NNH6 Q6NNH6_ARATH At1g19080 (GINS complex protein) R-ATH-176974; 21172 At1g19080 (GINS complex protein) nucleus [GO:0005634]; DNA replication [GO:0006260]; embryo development ending in seed dormancy [GO:0009793] locus:2011311;locus:2099976; AT1G19080AT3G55490; DNA replication complex GINS protein Os08g0274700 protein (cDNA clone:J013134L17, full insert sequence),Os08g0274700 protein (Fragment) A3BRF0,A0A0P0XEF1 A3BRF0_ORYSJ,A0A0P0XEF1_ORYSJ Os08g0274700 OsJ_26699 OSNPB_080274700,Os08g0274700 OSNPB_080274700 ENOG411DYA0 A0A1P8AQN6,A0JQ16 A0A1P8AQN6_ARATH,A0JQ16_ARATH Peptidase M50B-like protein,AT1G67060 protein (At1g67060) (Peptidase M50B-like protein) 18234,25784 Peptidase M50B-like protein,AT1G67060 protein (At1g67060) (Peptidase M50B-like protein) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2019743; AT1G67060 NA Os02g0221600 protein A0A0P0VGP5 A0A0P0VGP5_ORYSJ Os02g0221600 OSNPB_020221600 ENOG411DYA1 MKD15.6 Q8RUI8,F4K9N6 Q8RUI8_ARATH,F4K9N6_ARATH C5orf35 (Uncharacterized protein At5g23200),C5orf35 44852,43297 C5orf35 (Uncharacterized protein At5g23200),C5orf35 locus:2166801;,locus:2181519; AT5G23200,AT5G08270 NA Os02g0634600 protein (cDNA clone:J033061I23, full insert sequence),Os02g0634600 protein (Fragment) Q6H7I8,A0A0P0VM87 Q6H7I8_ORYSJ,A0A0P0VM87_ORYSJ Os02g0634600 Os02g0634600 OJ1643_A10.31 OsJ_07637 OSNPB_020634600,Os02g0634600 OSNPB_020634600 ENOG411DYA6 GRF7 Q9FJB8 GRF7_ARATH Growth-regulating factor 7 (AtGRF7) (Transcription activator GRF7) FUNCTION: Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. 40410 Growth-regulating factor 7 (AtGRF7) (Transcription activator GRF7) nucleus [GO:0005634]; ATP binding [GO:0005524]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; response to far red light [GO:0010218]; response to karrikin [GO:0080167]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. locus:2168676; AT5G53660 QLQ NA NA NA NA NA NA NA ENOG411DYA7 TBL35 Q8RXQ1 TBL35_ARATH Protein trichome birefringence-like 35 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 52689 Protein trichome birefringence-like 35 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; xylan O-acetyltransferase activity [GO:1990538]; xylan biosynthetic process [GO:0045492] locus:2149785; AT5G01620 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411DYA4 Q8VZ57,F4ICZ4 Q8VZ57_ARATH,F4ICZ4_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g52510),Alpha/beta-Hydrolases superfamily protein 41839,26205 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g52510),Alpha/beta-Hydrolases superfamily protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2035169; AT1G52510 Putative lysophospholipase OSJNBa0033G05.17 protein (Os04g0644600 protein) (cDNA clone:J013127A03, full insert sequence) Q7XTM8 Q7XTM8_ORYSJ Os04g0644600 Os04g0644600 OsJ_16393 OSJNBa0033G05.17 OSNPB_040644600 ENOG411DYA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Desaturase NA NA NA NA NA NA NA ENOG411DYAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os04g0451200 protein,Os02g0679000 protein Q6EP59,Q7XV42,A0A0P0WAS9,A0A0P0VMU7,A0A0N7KFJ5 Q6EP59_ORYSJ,Q7XV42_ORYSJ,A0A0P0WAS9_ORYSJ,A0A0P0VMU7_ORYSJ,A0A0N7KFJ5_ORYSJ Os02g0578300 B1267B06.2 B1342F01.33 OSNPB_020578300,Os04g0451200 Os04g0451200 OsJ_14999 OSJNBa0086B14.13 OSNPB_040451200,Os04g0451200 OSNPB_040451200,Os02g0679000 OSNPB_020679000,Os02g0577700 OSNPB_020577700 ENOG411DYAY LHW Q9XIN0 LHW_ARATH Transcription factor LHW (BHLH transcription factor delta) (bHLH delta) (Basic helix-loop-helix protein 156) (AtbHLH156) (bHLH 156) (Protein LONESOME HIGHWAY) (bHLH transcription factor bHLH156) DISRUPTION PHENOTYPE: Loss of bilateral symmetry and reduced number of cells in the center of the root, resulting in roots with only single xylem and phloem poles and defect in lateral root formation. {ECO:0000269|PubMed:17626058}. Reduced root vascular population. Roots lose bilateral symmetry and are monarch instead of diarch. Complete loss of root bilateral symmetry-D. Bergmann-2007 FUNCTION: Transcription activator that regulates root development; promotes the production of stele cells in roots. Coordinately controls the number of all vascular cell types by regulating the size of the pool of cells from which they arise. {ECO:0000269|PubMed:17626058}. 71771 Transcription factor LHW (BHLH transcription factor delta) (bHLH delta) (Basic helix-loop-helix protein 156) (AtbHLH156) (bHLH 156) (Protein LONESOME HIGHWAY) (bHLH transcription factor bHLH156) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; maintenance of root meristem identity [GO:0010078]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; stele development [GO:0010479]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in both root and shoot meristems. Present in root tips. {ECO:0000269|PubMed:17626058}. locus:2039580; AT2G27230 expressed protein Expressed protein (Os12g0160400 protein),BHLH transcription factor-like protein (Os01g0865600 protein) (cDNA clone:J013129B18, full insert sequence),Os11g0158500 protein Q0IPY1,Q5N9E6,Q0IUG3 Q0IPY1_ORYSJ,Q5N9E6_ORYSJ,Q0IUG3_ORYSJ Os12g0160400 LOC_Os12g06330 Os12g0160400 OsJ_35303 OSNPB_120160400,Os01g0865600 Os01g0865600 OSNPB_010865600 P0505D12.13,Os11g0158500 OSNPB_110158500 ENOG411DYAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Carboxypeptidase (EC 3.4.16.-) A0A0P0XX22 A0A0P0XX22_ORYSJ Os10g0541600 OSNPB_100541600 ENOG411DYAS SPO11-1,ATSPO11-1 Q9M4A2,A0A1I9LQV8 SPO11_ARATH,A0A1I9LQV8_ARATH Meiotic recombination protein SPO11-1 (AtSPO11-1) (EC 5.99.1.3),Spo11/DNA topoisomerase VI, subunit A protein DISRUPTION PHENOTYPE: Plants show a semi-sterile phenotype and a drastic decrease of meiotic recombination, indicating that SPO11-2 and SPO11-3 are not functionally redundant. SPO11-1 and SPO11-2 are both required for double-strand breaks induction. {ECO:0000269|PubMed:11157765, ECO:0000269|PubMed:17018031}. DNA fragmentation was undetectable in most cells.,11% of mutant pollen grains germinated compared to 97% for wild type.,Mutant produced a large proportion of dead pollen grains compared to wild type.,Only 3% of the ovules in the mutant showed differentiated female gametophytes. 74% of the fully developed ovules had no embryo sac.,Overall morphology similar to that of wild type exception made of the seed production.,The mutant exhibits a substantial reduction in recombination such that the chiasma frequency at metaphase I was &,A 2-h pulse of cisplatin at increasing concentrations was found to restore bivalent formation in Atspo11-1-3 meiocytes.,The reduction in seed-set in the Atspo11-1-3 allele is more severe than in Atspo11-1-1.,Total lack of chiasmata.,The first meiotic division of pollen mother cells because the homologs neither pair nor form SCs due to the lack of initial DSB formation Reduced fertility due to defects in meiosis-G. Pelletier-2001 FUNCTION: Component of a topoisomerase 6 complex specifically required for meiotic recombination (PubMed:11157765, PubMed:17018031, PubMed:17965269, PubMed:26917763). Together with MTOPVIB, mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination (PubMed:26917763). The complex promotes relaxation of negative and positive supercoiled DNA and DNA decatenation through cleavage and ligation cycles (PubMed:11157765, PubMed:17018031, PubMed:17965269, PubMed:26917763). {ECO:0000269|PubMed:11157765, ECO:0000269|PubMed:17018031, ECO:0000269|PubMed:17965269, ECO:0000269|PubMed:26917763}. 5.99.1.3 41804,30537 Meiotic recombination protein SPO11-1 (AtSPO11-1) (EC 5.99.1.3),Spo11/DNA topoisomerase VI, subunit A protein nuclear chromosome [GO:0000228]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; endodeoxyribonuclease activity, producing 3'-phosphomonoesters [GO:0016889]; metal ion binding [GO:0046872]; chiasma assembly [GO:0051026]; DNA catabolic process, endonucleolytic [GO:0000737]; double-strand break repair via homologous recombination [GO:0000724]; meiotic DNA double-strand break formation [GO:0042138]; reciprocal meiotic recombination [GO:0007131]; synapsis [GO:0007129],chromosome [GO:0005694]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; isomerase activity [GO:0016853]; DNA catabolic process, endonucleolytic [GO:0000737] DEVELOPMENTAL STAGE: Accumulates in early G2 phase and then disappears over a period of between 1 and 5 hours post-S phase. {ECO:0000269|PubMed:17785529}. TISSUE SPECIFICITY: Expressed in shoots, young seedlings, flowers and reproductive tissues. Not found in roots or rosette leaves. {ECO:0000269|PubMed:10710421}. locus:2090044; AT3G13170 meiotic recombination protein Meiotic recombination protein SPO11-1 (OsSPO11-1) (OsSPO11A) (Putative topoisomerase VI subunit A1) (OsTOP6A1) Q7Y021 SPO11_ORYSJ SPO11-1 Os03g0752200 LOC_Os03g54084 OJ1112_G08.6 OsJ_12593 OSJNBa0047E24.8 FUNCTION: Required for meiotic recombination. Mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. Is essential for both homologous chromosomes pairing and crossover formation during meiosis. {ECO:0000269|PubMed:20625906}. MISCELLANEOUS: Plants silencing TPO6A1 have no apparent growth defects during vegetative development, but most of the plant are completely sterile due to empty and shrunken mature pollen grains, and defect in the macrospores. {ECO:0000305|PubMed:20625906}. ENOG411DYAP Q93ZA9 Q93ZA9_ARATH AT4G10360 protein (AT4g10360/F24G24_160) (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein) 30207 AT4G10360 protein (AT4g10360/F24G24_160) (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein) integral component of membrane [GO:0016021] locus:2122814; AT4G10360 TLC Os01g0817100 protein,Os05g0485300 protein (cDNA clone:J033082E20, full insert sequence) Q93VP0,Q75J74 Q93VP0_ORYSJ,Q75J74_ORYSJ Os01g0817100 B1148D12.18 OsJ_03869 OSNPB_010817100 P0454H12.7,Os05g0485300 Os05g0485300 OJ1004_E02.1 OsJ_18984 OSJNBb0099O15.12 OSNPB_050485300 ENOG411DYAV CRCK2 Q8VZJ9 CRCK2_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 2 (EC 2.7.11.1) Pollen development defective. Complete male gametophyte defective; Female gametophyte defective-S. McCormick-2009 2.7.11.1 46175 Calmodulin-binding receptor-like cytoplasmic kinase 2 (EC 2.7.11.1) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; pollen development [GO:0009555] locus:2126011; AT4G00330 tyrosine protein kinase domain containing protein Os03g0148700 protein (Protein kinase domain containing protein, expressed) (cDNA clone:J013049K21, full insert sequence),Os03g0148700 protein (Fragment) Q8H085,A0A0P0VTD6 Q8H085_ORYSJ,A0A0P0VTD6_ORYSJ Os03g0148700 LOC_Os03g05470 Os03g0148700 OSJNBb0050N02.6 OSNPB_030148700,Os03g0148700 OSNPB_030148700 ENOG411DYAW MGN6.2,MGN6.7 Q9FI08,Q9FI04 Q9FI08_ARATH,Q9FI04_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Similarity to RNA-binding protein),RNA-binding (RRM/RBD/RNP motifs) family protein 19589,11383 RNA-binding (RRM/RBD/RNP motifs) family protein (Similarity to RNA-binding protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2164042;,locus:2164082; AT5G53680,AT5G53720 RNA recognition motif containing protein Os06g0220600 protein (Putative RRM-containing protein) (cDNA clone:001-018-G07, full insert sequence),Os02g0755400 protein (cDNA clone:002-101-G04, full insert sequence) Q67W00,Q0DXG2 Q67W00_ORYSJ,Q0DXG2_ORYSJ Os06g0220600 OsJ_20624 OSNPB_060220600 P0436F11.44 P0516A04.5,Os02g0755400 Os02g0755400 OSNPB_020755400 ENOG411DYAT Q9FLJ8 Y5613_ARATH Probable receptor-like protein kinase At5g61350 (EC 2.7.11.-) 2.7.11.- 92687 Probable receptor-like protein kinase At5g61350 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; cellular ammonia homeostasis [GO:0097275]; regulation of calcium ion transport [GO:0051924]; root hair cell development [GO:0080147] locus:2163158; AT5G61350 receptor-like protein kinase Os03g0759600 protein (Protein kinase family protein, putative, expressed) Q10DI4 Q10DI4_ORYSJ Os03g0759600 LOC_Os03g55210 OsJ_12665 OSNPB_030759600 ENOG411DYAU ICL P28297 ACEA_ARATH Isocitrate lyase (ICL) (EC 4.1.3.1) (Isocitrase) (Isocitratsysase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings fail to establish into plantlets with true leaves under low light or short day conditions. {ECO:0000269|PubMed:10805817, ECO:0000269|PubMed:15272001}. FUNCTION: Involved in storage lipid mobilization during the growth of higher plant seedling. {ECO:0000269|PubMed:10805817, ECO:0000269|PubMed:15272001}. PATHWAY: Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 1/2. {ECO:0000305}. ARA:AT3G21720-MONOMER;MetaCyc:MONOMER-1601; 4.1.3.1 64245 Isocitrate lyase (ICL) (EC 4.1.3.1) (Isocitrase) (Isocitratsysase) glyoxysome [GO:0009514]; isocitrate lyase activity [GO:0004451]; metal ion binding [GO:0046872]; glyoxylate cycle [GO:0006097]; tricarboxylic acid cycle [GO:0006099] DEVELOPMENTAL STAGE: Expressed from 1 to 3 days after seed imbibition (PubMed:10805817). Expressed from 1 to 5 days after seed imbibition (at protein level). {ECO:0000269|PubMed:10805817, ECO:0000269|PubMed:19246395}. locus:2093049; AT3G21720 Isocitrate lyase Isocitrate lyase (ICL) (EC 4.1.3.1) (Isocitrase) (Isocitratase) Q6Z6M4 ACEA_ORYSJ ICL Os07g0529000 LOC_Os07g34520 OsJ_24528 OSJNBa0007H12.39 FUNCTION: Involved in storage lipid mobilization during the growth of higher plant seedling. {ECO:0000269|PubMed:15944756}. ENOG411DYAJ Q501B9,A0A178V7N9,A0A1I9LR29,F4J9Z9 Q501B9_ARATH,A0A178V7N9_ARATH,A0A1I9LR29_ARATH,F4J9Z9_ARATH At1g49520 (SWIB complex BAF60b domain-containing protein),SWIB complex BAF60b domain-containing protein 42859,52462,50090,52246 At1g49520 (SWIB complex BAF60b domain-containing protein),SWIB complex BAF60b domain-containing protein plasmodesma [GO:0009506] locus:2010197;,locus:2085894; AT1G49520,AT3G19080 SWIB complex BAF60b domain-containing protein Os03g0764450 protein (Fragment) A0A0N7KI38 A0A0N7KI38_ORYSJ Os03g0764450 OSNPB_030764450 ENOG411DYAH F17O14.23 Q9C9Y3 Q9C9Y3_ARATH AT3G08760 protein (At3g08760) (Protein kinase superfamily protein) (Uncharacterized protein F17O14.23) 61062 AT3G08760 protein (At3g08760) (Protein kinase superfamily protein) (Uncharacterized protein F17O14.23) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] locus:2077768; AT3G08760 receptor-like protein kinase Os01g0822200 protein Q0JI62 Q0JI62_ORYSJ Os01g0822200 Os01g0822200 OsJ_03902 OSNPB_010822200 ENOG411DYAI COX1 P60620 COX1_ARATH Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) FUNCTION: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B (By similarity). {ECO:0000250}. PATHWAY: Energy metabolism; oxidative phosphorylation. MetaCyc:ATMG01360-MONOMER; 1.9.3.1 57996 Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; plasma membrane [GO:0005886]; respiratory chain complex IV [GO:0045277]; copper ion binding [GO:0005507]; cytochrome-c oxidase activity [GO:0004129]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; aerobic respiration [GO:0009060]; electron transport coupled proton transport [GO:0015990]; mitochondrial electron transport, cytochrome c to oxygen [GO:0006123] locus:504954619; ATMG01360 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B (By similarity) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I),Cytochrome c oxidase subunit 1 (EC 1.9.3.1) P14578,Q7JAI6 COX1_ORYSJ,Q7JAI6_ORYSJ COX1 COXI,cox1 FUNCTION: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.,FUNCTION: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. {ECO:0000256|RuleBase:RU000369}. ENOG411DYAN NSH3,NSH5,NSH4 Q8RY23,F4JZJ0,F4JZJ2 Q8RY23_ARATH,F4JZJ0_ARATH,F4JZJ2_ARATH AT5g18860/F17K4_110 (Inosine-uridine preferring nucleoside hydrolase family protein),Inosine-uridine preferring nucleoside hydrolase family protein 99072,28918,61789 AT5g18860/F17K4_110 (Inosine-uridine preferring nucleoside hydrolase family protein),Inosine-uridine preferring nucleoside hydrolase family protein apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; adenosine nucleosidase activity [GO:0047622]; inosine nucleosidase activity [GO:0047724]; adenosine catabolic process [GO:0006154]; inosine catabolic process [GO:0006148]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],hydrolase activity [GO:0016787],cytosol [GO:0005829]; purine nucleosidase activity [GO:0008477]; purine nucleoside catabolic process [GO:0006152] locus:2144910;,locus:2144925;,locus:2144950; AT5G18860,AT5G18870,AT5G18890 inosine-uridine preferring nucleoside hydrolase Os05g0406100 protein,Os05g0406100 protein (Fragment) Q0DI97,A0A0P0WM64,A0A0P0WM52 Q0DI97_ORYSJ,A0A0P0WM64_ORYSJ,A0A0P0WM52_ORYSJ Os05g0406100 Os05g0406100 OSNPB_050406100,Os05g0406100 OSNPB_050406100 ENOG411DYAB CBR2 P83291 NB5R2_ARATH NADH-cytochrome b5 reductase-like protein (B5R) (EC 1.6.2.2) FUNCTION: Desaturation and elongation of fatty acids. {ECO:0000250}. ARA:AT5G20080-MONOMER; R-ATH-114608;R-ATH-1237044;R-ATH-6798695; 1.6.2.2 35987 NADH-cytochrome b5 reductase-like protein (B5R) (EC 1.6.2.2) Golgi apparatus [GO:0005794]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; plant-type cell wall [GO:0009505]; copper ion binding [GO:0005507]; cytochrome-b5 reductase activity, acting on NAD(P)H [GO:0004128]; response to salt stress [GO:0009651] locus:2147680; AT5G20080 NADH-cytochrome b5 reductase-like NADH-cytochrome b5 reductase (EC 1.6.2.2) Q5VR12 Q5VR12_ORYSJ Os01g0174300 Os01g0174300 OsJ_00570 OSJNBa0089K24.21 OSNPB_010174300 ENOG411DYAC MRA19.22 C0LGU5,A0A1P8BHA1 Y5457_ARATH,A0A1P8BHA1_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g45780 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 68206,63360 Probable LRR receptor-like serine/threonine-protein kinase At5g45780 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2171973; AT5G45780 LRR receptor-like serine threonine-protein kinase Os02g0236100 protein (Putative SERK1 protein) (cDNA clone:J013129G20, full insert sequence) Q6EUS5 Q6EUS5_ORYSJ C68 Os02g0236100 OJ1077_A12.16 OSNPB_020236100 ENOG411DYAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family OSJNBa0027O01.12 protein (OSJNBb0006L01.2 protein) (Os04g0182300 protein) Q7XSC3 Q7XSC3_ORYSJ Os04g0182300 Os04g0182300 OSJNBa0027O01.12 OSJNBb0006L01.2 OSNPB_040182300 ENOG411DYAF Q8W1E4 Q8W1E4_ARATH At1g12650/T12C24_1 (rRNA biogenesis RRP36-like protein) R-ATH-6791226; 29099 At1g12650/T12C24_1 (rRNA biogenesis RRP36-like protein) 90S preribosome [GO:0030686]; nucleolus [GO:0005730]; cleavage involved in rRNA processing [GO:0000469]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2195082; AT1G12650 Ribosomal RNA processing protein 36 Os09g0525200 protein (cDNA clone:J023131H02, full insert sequence) Q651M7 Q651M7_ORYSJ Os09g0525200 Os09g0525200 OsJ_30058 OSJNBa0047P18.28 OSNPB_090525200 ENOG411DYAE MHM17.1 Q84WU9,A0A1P8B9K8,F4K948 C3H64_ARATH,A0A1P8B9K8_ARATH,F4K948_ARATH Zinc finger CCCH domain-containing protein 64 (AtC3H64),CwfJ-like family protein / zinc finger (CCCH-type) family protein 66421,56229,45695 Zinc finger CCCH domain-containing protein 64 (AtC3H64),CwfJ-like family protein / zinc finger (CCCH-type) family protein cytosol [GO:0005829]; catalytic activity [GO:0003824]; DNA binding [GO:0003677]; metal ion binding [GO:0046872],catalytic activity [GO:0003824]; metal ion binding [GO:0046872] locus:2164630; AT5G56900 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 59 (OsC3H59) Q69NK8 C3H59_ORYSJ Os09g0364000 LOC_Os09g19940 OJ1001_G09.14 ENOG411EJT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DTTQ CALS3,CALS5,GSL12 Q9LXT9,Q3B724,F4K116 CALS3_ARATH,CALS5_ARATH,F4K116_ARATH Callose synthase 3 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 12),Callose synthase 5 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 2) (Protein LESS ADHERENT POLLEN 1),Glucan synthase-like 12 DISRUPTION PHENOTYPE: Plants develop deformed and inviable pollen grains which do not have exin. {ECO:0000269|PubMed:16212660}. severely reduced silique length and seed yield Severely reduced fertility; Small, sterile anthers-D. Verma-2005 FUNCTION: Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals (By similarity). {ECO:0000250}.,FUNCTION: Required for the formation of the callose wall separating the tetraspores (interstitial wall) and surrounding the pollen mother cells (pheripheral wall). Required for exine formation on pollen wall. May be involved in callose synthesis during pollen tube growth. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals. {ECO:0000269|PubMed:15842618, ECO:0000269|PubMed:16212660}. ARA:AT5G13000-MONOMER;,ARA:AT2G13680-MONOMER; 2.4.1.34 226184,220661,221532 Callose synthase 3 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 12),Callose synthase 5 (EC 2.4.1.34) (1,3-beta-glucan synthase) (Protein GLUCAN SYNTHASE-LIKE 2) (Protein LESS ADHERENT POLLEN 1),Glucan synthase-like 12 1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; regulation of cell shape [GO:0008360],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075]; cell wall organization [GO:0071555]; microsporogenesis [GO:0009556]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; pollen wall assembly [GO:0010208]; regulation of cell shape [GO:0008360]; regulation of pollen tube growth [GO:0080092],1,3-beta-D-glucan synthase complex [GO:0000148]; integral component of membrane [GO:0016021]; 1,3-beta-D-glucan synthase activity [GO:0003843]; (1->3)-beta-D-glucan biosynthetic process [GO:0006075] DEVELOPMENTAL STAGE: Expressed throughout pollen development, both in pollen mother cells and in developing and mature pollen grains. Expressed in growing pollen tube. {ECO:0000269|PubMed:15842618, ECO:0000269|PubMed:16212660}. locus:2182335;,locus:2040456; AT5G13000,AT2G13680 callose synthase Os02g0832400 protein (Fragment),Os03g0128100 protein (Fragment),Os06g0182300 protein (Fragment),Os03g0128200 protein,Os02g0832500 protein (Fragment),Os06g0728800 protein (Fragment) Q0DW47,Q0DVI7,Q0DE26,A0A0P0VSN8,A0A0P0VSS0,A0A0P0VRQ2,A0A0P0VRP0,A0A0P0X182 Q0DW47_ORYSJ,Q0DVI7_ORYSJ,Q0DE26_ORYSJ,A0A0P0VSN8_ORYSJ,A0A0P0VSS0_ORYSJ,A0A0P0VRQ2_ORYSJ,A0A0P0VRP0_ORYSJ,A0A0P0X182_ORYSJ Os02g0832400 Os02g0832400 OSNPB_020832400,Os03g0128100 OSNPB_030128100,Os06g0182300 Os06g0182300 OSNPB_060182300,Os03g0128200 OSNPB_030128200,Os02g0832400 OSNPB_020832400,Os02g0832500 OSNPB_020832500,Os06g0728800 OSNPB_060728800 ENOG411DTTZ Q9M9N3 Q9M9N3_ARATH T17B22.17 protein (Tudor/PWWP/MBT superfamily protein) 87385 T17B22.17 protein (Tudor/PWWP/MBT superfamily protein) plasmodesma [GO:0009506] locus:2097805; AT3G03140 NA Os02g0700000 protein (cDNA clone:J023115E12, full insert sequence),Os02g0478050 protein (Fragment) Q6Z8D4,A0A0N7KFA4 Q6Z8D4_ORYSJ,A0A0N7KFA4_ORYSJ Os02g0700000 OJ1111_E07.5 OsJ_08046 OSNPB_020700000 P0459B01.34,Os02g0478050 OSNPB_020478050 ENOG411DTTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1929) Glyoxal oxidase N-terminus family protein, expressed (Os11g0169700 protein) (Probable galactose oxidase (EC 1.1.3.9) F15B8.190 [similarity]-Arabidopsis thaliana) Q53JH2 Q53JH2_ORYSJ LOC_Os11g06870 Os11g0169700 OSNPB_110169700 ENOG411DTTK Q9LJN1 Q9LJN1_ARATH At3g19650 (Cyclin-like protein) 35282 At3g19650 (Cyclin-like protein) locus:2091246; AT3G19650 NA Os03g0203000 protein (Somatic embryogenesis related protein, putative, expressed) (cDNA clone:J013021H17, full insert sequence) Q10QA8 Q10QA8_ORYSJ LOC_Os03g10590 Os03g0203000 OsJ_09821 OSNPB_030203000 ENOG411ECJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os02g0298200 protein (Putative lectin-like receptor kinase 72) (cDNA clone:002-148-G04, full insert sequence),Os02g0299000 protein Q6K4S0,A0A0P0VHY6 Q6K4S0_ORYSJ,A0A0P0VHY6_ORYSJ Os02g0298200 OJ1654_A02.26 OSJNBa0030M21.4 OSNPB_020298200,Os02g0299000 OSNPB_020299000 ENOG411ECJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 'Cold-shock' DNA-binding domain NA NA NA NA NA NA NA ENOG411ECJY Q3EDF9,F4IER8 Q3EDF9_ARATH,F4IER8_ARATH Toll-Interleukin-Resistance (TIR) domain family protein 19458,19945 Toll-Interleukin-Resistance (TIR) domain family protein signal transduction [GO:0007165] locus:504956277;,locus:2195683; AT1G09665,AT1G60320 TIR NA NA NA NA NA NA NA ENOG411ECJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase NA NA NA NA NA NA NA ENOG411ECJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECJU P58223,A0A1P8B642 Y4837_ARATH,A0A1P8B642_ARATH KH domain-containing protein At4g18375,RNA-binding KH domain-containing protein 65761,57900 KH domain-containing protein At4g18375,RNA-binding KH domain-containing protein nucleus [GO:0005634]; RNA binding [GO:0003723],RNA binding [GO:0003723] locus:2831364; AT4G18375 KH domain-containing protein NA NA NA NA NA NA NA ENOG411ECJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411ECJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADP-ribosylation factor family NA NA NA NA NA NA NA ENOG411ECJN O04567,C0LGI5 Y1719_ARATH,Y1699_ARATH Probable inactive receptor kinase At1g27190,Probable LRR receptor-like serine/threonine-protein kinase At1g69990 (EC 2.7.11.1) 2.7.11.1 65424,65553 Probable inactive receptor kinase At1g27190,Probable LRR receptor-like serine/threonine-protein kinase At1g69990 (EC 2.7.11.1) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2205834;,locus:2020558; AT1G27190,AT1G69990 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411ECJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411ECJH ZIP9 O82643,A0A1P8B6P2 ZIP9_ARATH,A0A1P8B6P2_ARATH Zinc transporter 9 (ZRT/IRT-like protein 9),ZIP metal ion transporter family FUNCTION: Zinc transporter involved in zinc uptake in roots. Targeted by BZIP19 transcription factor in response to zinc-deficient conditions. {ECO:0000269|PubMed:26306426}. 36151,41250 Zinc transporter 9 (ZRT/IRT-like protein 9),ZIP metal ion transporter family integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385]; response to zinc ion [GO:0010043]; zinc II ion transmembrane transport [GO:0071577],integral component of membrane [GO:0016021]; zinc ion transmembrane transporter activity [GO:0005385] locus:2123787; AT4G33020 ZIP Zinc transporter NA NA NA NA NA NA NA ENOG411ECJI MWD9.9 Q93ZM2 Q93ZM2_ARATH AT5g22310/MWD9_9 (Trichohyalin-like protein) 55014 AT5g22310/MWD9_9 (Trichohyalin-like protein) locus:2176387; AT5G22310 NA NA NA NA NA NA NA NA ENOG411ECJF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECJD Q8GYI3 Q8GYI3_ARATH HR-like lesion-inducing protein-like protein (Uncharacterized protein At3g23175) 18683 HR-like lesion-inducing protein-like protein (Uncharacterized protein At3g23175) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:504955777; AT3G23175 HR-like lesion-inducing NA NA NA NA NA NA NA ENOG411ECJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: e3 ubiquitin-protein ligase Os01g0122701 protein A0A0P0UXQ8 A0A0P0UXQ8_ORYSJ Os01g0122701 OSNPB_010122701 ENOG411ECJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411ECJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ECJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytosine specific DNA methyltransferase replication foci domain NA NA NA NA NA NA NA ENOG411ECJ5 PANK1 O80765,A0A1P8AN29,A0A1P8AN33 PANK1_ARATH,A0A1P8AN29_ARATH,A0A1P8AN33_ARATH Pantothenate kinase 1 (AtPANK1) (EC 2.7.1.33) (AtCoaA) (Pantothenic acid kinase 1),Pantothenate kinase 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but homozygous double mutants pank1-1 and pank2-1 are embryonic lethal. {ECO:0000269|PubMed:16897480}. The mutant siliques contained a percentage of shriveled seed remnants which manifested as gaps in the developing line of green seeds.,embryo lethal. FUNCTION: Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration. Functionally redudant with PANK2. {ECO:0000269|PubMed:12860978, ECO:0000269|PubMed:16897480}. PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5. 2.7.1.33 42421,38229,33898 Pantothenate kinase 1 (AtPANK1) (EC 2.7.1.33) (AtCoaA) (Pantothenic acid kinase 1),Pantothenate kinase 1 ATP binding [GO:0005524]; pantothenate kinase activity [GO:0004594]; coenzyme A biosynthetic process [GO:0015937] TISSUE SPECIFICITY: Highly expressed in leaves and developing seeds. Expressed in roots, stems and flowers. {ECO:0000269|PubMed:16897480}. locus:2195638; AT1G60440 pantothenate kinase NA NA NA NA NA NA NA ENOG411ECJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain NA NA NA NA NA NA NA ENOG411ECJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECJ1 ERF115,ERF114 Q9LY29,Q9FH54 EF115_ARATH,EF114_ARATH Ethylene-responsive transcription factor ERF115,Ethylene-responsive transcription factor ERF114 (ERF bud enhancer) FUNCTION: Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}.,FUNCTION: Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. 29406,27726 Ethylene-responsive transcription factor ERF115,Ethylene-responsive transcription factor ERF114 (ERF bud enhancer) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to fungus [GO:0050832]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}. TISSUE SPECIFICITY: Restricted to dividing quiescent center cells. {ECO:0000269|PubMed:24158907}.,TISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}. locus:2183304;,locus:2156171; AT5G07310,AT5G61890 Transcription factor NA NA NA NA NA NA NA ENOG411E4MT modifier of snc1 9 Q5Q0H6 Q5Q0H6_ARATH Uncharacterized protein 21815 Uncharacterized protein locus:2034755; AT1G12530 NA Expressed protein (Os03g0228500 protein) (cDNA clone:J033066F19, full insert sequence) Q10PM7 Q10PM7_ORYSJ Os03g0228500 LOC_Os03g12720 Os03g0228500 OsJ_10011 OSNPB_030228500 ENOG411E4M9 Q494N5,F4JNU3,F4JNU2,F4JNT9,F4JNU1 Q494N5_ARATH,F4JNU3_ARATH,F4JNU2_ARATH,F4JNT9_ARATH,F4JNU1_ARATH At4g35785 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 28271,23797,26625,21742,23338 At4g35785 (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:504955485; AT4G35785 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E4M5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH OSJNBa0038P21.14 protein (Os04g0350700 protein) (cDNA clone:002-146-G10, full insert sequence) Q0JDZ1 Q0JDZ1_ORYSJ Os04g0350700 Os04g0350700 OSJNBa0038P21.14 OSNPB_040350700 ENOG411E38D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Mediator of RNA polymerase II transcription subunit Expressed protein (Os12g0614000 protein) (cDNA clone:J013162A19, full insert sequence) B7EFD0 B7EFD0_ORYSJ Os12g0614000 LOC_Os12g41962 OsJ_36861 OSNPB_120614000 ENOG411E38C Q680L3,B3H661,F4I9G7 Q680L3_ARATH,B3H661_ARATH,F4I9G7_ARATH TLR4 regulator/MIR-interacting MSAP protein (Uncharacterized protein At1g42480),TLR4 regulator/MIR-interacting MSAP protein 20568,16596,20218 TLR4 regulator/MIR-interacting MSAP protein (Uncharacterized protein At1g42480),TLR4 regulator/MIR-interacting MSAP protein endoplasmic reticulum [GO:0005783] locus:2206100; AT1G42480 TLR4 regulator and MIR-interacting MSAP Os02g0117200 protein Q0E4I9 Q0E4I9_ORYSJ Os02g0117200 Os02g0117200 OsJ_05127 OSNPB_020117200 ENOG411E38H RMA3 Q8GUK7 RMA3_ARATH E3 ubiquitin-protein ligase RMA3 (EC 2.3.2.27) (Protein RING membrane-anchor 3) (RING-type E3 ubiquitin transferase RMA3) DISRUPTION PHENOTYPE: No visible phenotype and no effect on drought stress response, probably due to the redundancy with RMA1 and RMA2. {ECO:0000269|PubMed:19234086}. FUNCTION: E3 ubiquitin-protein ligase. {ECO:0000269|PubMed:19224217}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-382556;R-ATH-901032; 2.3.2.B10; 2.3.2.27 26984 E3 ubiquitin-protein ligase RMA3 (EC 2.3.2.27) (Protein RING membrane-anchor 3) (RING-type E3 ubiquitin transferase RMA3) Derlin-1 retrotranslocation complex [GO:0036513]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ubiquitin-protein transferase activity [GO:0004842]; ER-associated misfolded protein catabolic process [GO:0071712]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] TISSUE SPECIFICITY: Ubiquitous. Highly expressed in roots. {ECO:0000269|PubMed:19224217}. locus:2124004; AT4G27470 E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411E38T Q94AK9,A0A1P8B8W7,F4JUE0,F4JUD9,F4JV23 Q94AK9_ARATH,A0A1P8B8W7_ARATH,F4JUE0_ARATH,F4JUD9_ARATH,F4JV23_ARATH 2Fe-2S ferredoxin-like superfamily protein (Uncharacterized protein At4g32590),2Fe-2S ferredoxin-like superfamily protein 18663,13193,19132,18874,12352 2Fe-2S ferredoxin-like superfamily protein (Uncharacterized protein At4g32590),2Fe-2S ferredoxin-like superfamily protein electron carrier activity [GO:0009055]; iron-sulfur cluster binding [GO:0051536] locus:2125637; AT4G32590 2Fe-2S iron-sulfur cluster binding domain Os05g0555300 protein (cDNA clone:001-108-E03, full insert sequence),Os05g0555300 protein (cDNA clone:001-109-G11, full insert sequence) Q0DG36,Q6I620 Q0DG36_ORYSJ,Q6I620_ORYSJ Os05g0555300 Os05g0555300 OsJ_19490 OSNPB_050555300,Os05g0555300 OJ1263_E10.16 OSNPB_050555300 ENOG411E38W A0A1P8B3X9 A0A1P8B3X9_ARATH Transcription repressor 20639 Transcription repressor Pfam:DUF623 Os04g0447900 protein A0A0P0WAX1 A0A0P0WAX1_ORYSJ Os04g0447900 OSNPB_040447900 ENOG411E38P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0161900 protein A0A0P0Y792 A0A0P0Y792_ORYSJ Os12g0161900 OSNPB_120161900 ENOG411E382 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0709100 protein (Fragment) A0A0P0VNP8 A0A0P0VNP8_ORYSJ Os02g0709100 OSNPB_020709100 ENOG411EM9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Quinolinate synthetase A protein NA NA NA NA NA NA NA ENOG411EM9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription NA NA NA NA NA NA NA ENOG411EM9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acidPPc NA NA NA NA NA NA NA ENOG411EM9R Q9FGF0,A8MSE9,F4KDP8 PGML1_ARATH,A8MSE9_ARATH,F4KDP8_ARATH Phosphoglycerate mutase-like protein 1,Phosphoglycerate mutase family protein FUNCTION: May play a role in carbohydrates metabolism. {ECO:0000250|UniProtKB:Q9MAA2}. 31599,27199,22385 Phosphoglycerate mutase-like protein 1,Phosphoglycerate mutase family protein cytosol [GO:0005829] locus:2179381; AT5G64460 PGAM NA NA NA NA NA NA NA ENOG411EM9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os06g0331300 protein (Fragment) A0A0P0WW73,A0A0N7KM16 A0A0P0WW73_ORYSJ,A0A0N7KM16_ORYSJ Os06g0331300 OSNPB_060331300 ENOG411EM9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0018M05.8 protein (Os04g0674100 protein),Os04g0674100 protein Q7XQA0,A0A0P0WG77 Q7XQA0_ORYSJ,A0A0P0WG77_ORYSJ OSJNBa0018M05.8 Os04g0674100 OSNPB_040674100,Os04g0674100 OSNPB_040674100 ENOG411EM9M ZAR1 Q9ZU46 ZAR1_ARATH Receptor protein kinase-like protein ZAR1 (EC 2.7.11.1) (Protein ZYGOTIC ARREST 1) DISRUPTION PHENOTYPE: Embryo lethal when homozygous. {ECO:0000269|PubMed:27014878}. FUNCTION: Receptor protein kinase acting as an integrator for intracellular calcium and heterotrimeric G protein signaling with extracellular signals during early zygote development. Involved in modulating the asymmetric division of zygote and the cell fate determination of its daughter cells. {ECO:0000269|PubMed:27014878}. 2.7.11.1 78307 Receptor protein kinase-like protein ZAR1 (EC 2.7.11.1) (Protein ZYGOTIC ARREST 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777]; zygote asymmetric cell division [GO:0010070]; zygote asymmetric cytokinesis in embryo sac [GO:0010069] TISSUE SPECIFICITY: Expressed at the micropylar nuclei of the embryo sac at eight-nucleate stage before cellularization, but not in chalazal nuclei. After cellularization, expressed in central cell and synergids in mature embryo sac. After fertilization, detected specifically in zygote, endosperm precursor cell, and later in endosperm. In addition, also present in sperm and the vegetative cells in both pollen and pollen tube. Expressed at high level in the egg cell, the central cell, the endosperm, and at low level in the zygote. {ECO:0000269|PubMed:27014878}. locus:2038706; AT2G01210 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EM9N IMK2 Q9SCT4 IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 (Protein INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2) 90261 Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 (Protein INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2) cell wall [GO:0005618]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in meristems, including roots, vegetative, inflorescence and floral meristems. {ECO:0000269|Ref.5, ECO:0000269|Ref.6}. locus:2098267; AT3G51740 Leucine-rich repeat receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EM9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EM9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0695700 protein,Os04g0624900 protein (Fragment) Q0DYG3,A0A0P0WF62 Q0DYG3_ORYSJ,A0A0P0WF62_ORYSJ Os02g0695700 Os02g0695700 OsJ_08018 OSNPB_020695700,Os04g0624900 OSNPB_040624900 ENOG411EM9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial RNA polymerase alpha chain C terminal domain DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) P0C500 RPOA_ORYSJ rpoA Nip100 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000255|HAMAP-Rule:MF_00059}. ENOG411EM9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0484500 protein (Fragment) A0A0P0WWT3 A0A0P0WWT3_ORYSJ Os06g0484500 OSNPB_060484500 ENOG411EM9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain NA NA NA NA NA NA NA ENOG411EM9F COP1 P43254,A0A1P8B2S1 COP1_ARATH,A0A1P8B2S1_ARATH E3 ubiquitin-protein ligase COP1 (EC 2.3.2.27) (Constitutive photomorphogenesis protein 1) (RING-type E3 ubiquitin transferase COP1),Transducin/WD40 repeat-like superfamily protein DISRUPTION PHENOTYPE: The double mutant shw1 cop1 displays an enhanced photomorphogenic growth in the darkness as well as abnormal accumulation of HY5. {ECO:0000269|PubMed:26474641}. Blue-light- or dark-grown mutants contain high levels of anthocyanins and are not responsive to cytokinins.,Both dark- and light-grown homozygous mutant seedlings are severely retarded in their development with significantly reduced cell elongation in their hypocotyls and reduced cell enlargement in their cotyledons. Both mature seeds and seedlings homozygous for the mutations exhibit dark purple coloration in their hypocotyls and cotyledons due to high levels of anthocyanin accumulation. Most important homozygous mutants are adult lethal. Occasionally some mutant individuals will develop up to three pairs of tiny true leaves before senescence. Not a single mutant plant has been able to survive to reproduce.,Dark- and light-grown strong mutant seedlings have short hypocotyls of similar length.,Dark-grown mutant seedlings are transferred to the light a significant portion of the seedlings are unable to green and will bleach out and die.,Mutant belonging to the strong class. Milder phenotypes than that observed in the mutants of the lethal class. Not adult lethal although mutation causes a severe size reduction of light-grown mature plants and greatly reduce seed set. Dark-grown seedlings homozygous for the mutation exhibit light-grown characteristics including patterns of cell differentiation and gene expression.,The mutant does not show additional hypocotyl elongation under far-red light-enriched conditions whereas the wild-type seedlings display more than a twofold increase in hypocotyl elongation.,Under long-day or continuous light conditions wild-type plants and the mutant flower after producing approximately seven rosette leaves and growing for 3 to 4 weeks. However under short-day conditions wildtype plants produce more than 40 rosette leaves and grow for ~75 days before flowering whereas the mutant line continues to produce only seven rosette leaves and flower earlier than the wild-type plants.,Indistinguishable from the respective cop1 mutants when grown in darkness.,No suppression of the light-dependent cop1 phenotype where seedlings bleach and die when transferred from darkness to light. This is in contrast to the phenotype observed in the other two double mutants: cop1-4/hyh and cop1-6/hyh.,Dark-grown seedlings homozygous for weak copl mutations have longer hypocotyls than their light-grown siblings and light-grown wild-type seedlings although they are clearly shorter than etiolated wild-type seedlings.,Mutant belonging to the weak class. Milder phenotypes than that observed in the mutants of the strong class. Not adult lethal although mutation causes a severe size reduction of light-grown mature plants and greatly reduce seed set. Dark-grown seedlings homozygous for the mutation exhibit light-grown characteristics including patterns of cell differentiation and gene expression.,Suppression in a substantial number of seedlings of the light-dependent cop1 phenotype where seedlings bleach and die when transferred from darkness to light.,Roots of the mutant contained ~20-fold the amount of chlorophyll of the wild type. Seedling lethal; Red embryos, cotyledons, and roots due to anthocyanin accumulation; Severely delayed germination; Abnormal growth in the dark-X. Deng-1992 FUNCTION: E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors such as HY5, HYH and LAF1. Down-regulates MYB21, probably via ubiquitination process. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways. Mediates the ubiquitination-dependent degradation of HY5 in the darkness during seedling development (e.g. hypocotyl growth) (PubMed:26474641). Represses CIP7 in darkness (PubMed:9668129). {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:12023303, ECO:0000269|PubMed:26474641, ECO:0000269|PubMed:9668129}. MISCELLANEOUS: Plants lacking COP1 are not viable.; MISCELLANEOUS: Although plants lack TRIB proteins, a human TRIB1 peptide binds to a highly conserved surface on the top face of the beta propeller, indicating a general mode for recognition of peptide motifs by COP1. {ECO:0000269|PubMed:27041596}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000269|PubMed:14597662}. R-ATH-349425;R-ATH-8951664; 2.3.2.27 76188,64043 E3 ubiquitin-protein ligase COP1 (EC 2.3.2.27) (Constitutive photomorphogenesis protein 1) (RING-type E3 ubiquitin transferase COP1),Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; nuclear body [GO:0016604]; nuclear ubiquitin ligase complex [GO:0000152]; nucleus [GO:0005634]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; anthocyanin-containing compound metabolic process [GO:0046283]; DNA repair [GO:0006281]; entrainment of circadian clock [GO:0009649]; photomorphogenesis [GO:0009640]; photoperiodism, flowering [GO:0048573]; red, far-red light phototransduction [GO:0009585]; regulation of stomatal movement [GO:0010119]; shade avoidance [GO:0009641]; skotomorphogenesis [GO:0009647] locus:2059359; AT2G32950 E3 ubiquitin-protein ligase COP1, constitutive photomorphogenesis 1 (E3 ubiquitin-protein ligase) (Os02g0771100 protein) (cDNA clone:J013104O14, full insert sequence),Os02g0771100 protein (Putative COP1, constitutive photomorphogenesis 1) Q6ZHH4,Q6ZHH3 Q6ZHH4_ORYSJ,Q6ZHH3_ORYSJ PPS Os02g0771100 OJ1353_F08.9-1 OSNPB_020771100,OJ1353_F08.9-2 Os02g0771100 OSNPB_020771100 ENOG411EM98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EM91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAA transporter family NA NA NA NA NA NA NA ENOG411EM93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EM95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EM94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative integral membrane protein conserved region (DUF2404) NA NA NA NA NA NA NA ENOG411EM97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA integral membrane single C2 domain protein NA NA NA NA NA NA NA ENOG411EM96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411E1U1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain Cyclin-D2-2 (G1/S-specific cyclin-D2-2) (CycD2;2) Q8LHA8 CCD22_ORYSJ CYCD2-2 Os07g0620800 LOC_Os07g42860 OsJ_024175 P0594D10.119 ENOG411DRE5 SDF2 Q93ZE8 SDF2_ARATH Stromal cell-derived factor 2-like protein (AtSDF2) (SDF2-like protein) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are insensitive to seedling growth inhibition in response to the pathogen-associated molecular pattern (PAMP) elf18 and show increased susceptibility to phytopathogenic bacteria. {ECO:0000269|PubMed:19763086}. enhanced disease susceptibility to bacteria and fungi Sensitive to tunicamycin (inducer of the unfolded protein response) and DTT (ER homeostasis-perturbing compound)-S. Strahl-2010 FUNCTION: Involved in the endoplasmic reticulum (ER) protein quality control and unfolded protein response. May be involved in the quality control of glycoproteins. Forms a complex in the ER with ERDJ3B and MED37A/BIP1 which is required for the proper accumulation and function of the surface-exposed leucine-rich repeat receptor kinases EFR involved in pathogen-associated molecular pattern (PAMP) triggered immunity. {ECO:0000269|PubMed:19763086, ECO:0000269|PubMed:20378538}. 23935 Stromal cell-derived factor 2-like protein (AtSDF2) (SDF2-like protein) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; mannosyltransferase activity [GO:0000030]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; protein glycosylation [GO:0006486] locus:2040199; AT2G25110 stromal cell-derived factor Os08g0440500 protein (Putative stromal cell-derived factor 2) (cDNA clone:001-001-B11, full insert sequence),Os08g0278900 protein (Stromal cell-derived factor 2-like protein) Q6Z9G2,Q6Z1L1 Q6Z9G2_ORYSJ,Q6Z1L1_ORYSJ Os08g0440500 OsJ_27472 OSNPB_080440500 P0524F03.39 P0528B09.12,Os08g0278900 Os08g0278900 OsJ_26718 OSJNBa0091M20.30 OSNPB_080278900 P0026A08.5 ENOG411DRE4 RAD23A,RAD23B,RAD23D,RAD23C Q84L32,Q84L33,Q84L30,Q84L31,A0A1P8AW31,F4KCN6,A8MR76,F4JD59,F4IF85,F4IF83,F4JD57 RD23A_ARATH,RD23B_ARATH,RD23D_ARATH,RD23C_ARATH,A0A1P8AW31_ARATH,F4KCN6_ARATH,A8MR76_ARATH,F4JD59_ARATH,F4IF85_ARATH,F4IF83_ARATH,F4JD57_ARATH Probable ubiquitin receptor RAD23a (AtRAD23a) (Putative DNA repair protein RAD23-2) (RAD23-like protein 2) (AtRAD23-2),Ubiquitin receptor RAD23b (AtRAD23b) (Putative DNA repair protein RAD23-1) (RAD23-like protein 1) (AtRAD23-1),Ubiquitin receptor RAD23d (AtRAD23d) (Putative DNA repair protein RAD23-4) (RAD23-like protein 4) (AtRAD23-4),Ubiquitin receptor RAD23c (AtRAD23c) (Putative DNA repair protein RAD23-3) (RAD23-like protein 3) (AtRAD23-3),Rad23 UV excision repair protein family,RAD23 UV excision repair family protein DISRUPTION PHENOTYPE: Slow growth with abnormal phyllotaxy, shorter primary root with fewer lateral roots, shorter inflorescences, smaller siliques and reduced seed set, with unfertilized ovules interspersed among seeds of normal appearance. Mutant displays resistance to mitomycin C (MMC). {ECO:0000269|PubMed:20086187}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20086187}. Slow growth; Abnormal phyllotaxy; Short roots and inflorescence stems; Few lateral roots; Reduced fertility-R. Vierstra-2010 FUNCTION: May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP) (By similarity). {ECO:0000250}.,FUNCTION: May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP). {ECO:0000250, ECO:0000269|PubMed:20059542, ECO:0000269|PubMed:20086187}.,FUNCTION: May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP) (By similarity). {ECO:0000250, ECO:0000269|PubMed:20059542}.,FUNCTION: May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP). {ECO:0000250, ECO:0000269|PubMed:20059542, ECO:0000269|PubMed:21764993}. R-ATH-532668;R-ATH-5689877;R-ATH-5696394;R-ATH-5696395; 39842,39747,40066,44247,37232,19545,34712,30665,42392,37355,44160 Probable ubiquitin receptor RAD23a (AtRAD23a) (Putative DNA repair protein RAD23-2) (RAD23-like protein 2) (AtRAD23-2),Ubiquitin receptor RAD23b (AtRAD23b) (Putative DNA repair protein RAD23-1) (RAD23-like protein 1) (AtRAD23-1),Ubiquitin receptor RAD23d (AtRAD23d) (Putative DNA repair protein RAD23-4) (RAD23-like protein 4) (AtRAD23-4),Ubiquitin receptor RAD23c (AtRAD23c) (Putative DNA repair protein RAD23-3) (RAD23-like protein 3) (AtRAD23-3),Rad23 UV excision repair protein family,RAD23 UV excision repair family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; polyubiquitin modification-dependent protein binding [GO:0031593]; proteasome binding [GO:0070628]; ubiquitin binding [GO:0043130]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],cytoplasm [GO:0005737]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; polyubiquitin modification-dependent protein binding [GO:0031593]; proteasome binding [GO:0070628]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; polyubiquitin modification-dependent protein binding [GO:0031593]; proteasome binding [GO:0070628]; ubiquitin binding [GO:0043130]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to cold [GO:0009409],nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],nucleus [GO:0005634]; nucleotide-excision repair [GO:0006289],nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; proteasome binding [GO:0070628]; ubiquitin binding [GO:0043130]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] TISSUE SPECIFICITY: Widely expressed in the whole plant. {ECO:0000269|PubMed:20086187}. locus:2200522;,locus:2177376;,locus:2076944;,locus:2181362;,locus:2019883; AT1G16190,AT1G79650,AT5G38470,AT3G02540,AT5G16090 DNA repair protein Os06g0264300 protein (Putative RAD23 protein) (cDNA clone:006-311-C08, full insert sequence),Os02g0179300 protein (Putative RAD23 protein),Os06g0264300 protein (Fragment),Os02g0179300 protein (Fragment) Q5Z6P9,Q6ETL3,A0A0P0WUW7,A0A0P0VFL2 Q5Z6P9_ORYSJ,Q6ETL3_ORYSJ,A0A0P0WUW7_ORYSJ,A0A0P0VFL2_ORYSJ Os06g0264300 Os06g0264300 OJ1001_B06.1 OsJ_20893 OSJNBa0037N01.48 OSNPB_060264300,Os02g0179300 OsJ_05616 OSNPB_020179300 P0544B02.21,Os06g0264300 OSNPB_060264300,Os02g0179300 OSNPB_020179300 ENOG411DRE7 T07M07.1 F4HQ88,Q9XEE4,Q8RX85,F4HQ87,F4JI60 F4HQ88_ARATH,Q9XEE4_ARATH,Q8RX85_ARATH,F4HQ87_ARATH,F4JI60_ARATH Protein kinase superfamily protein,Hypothetical Ser-Thr protein kinase (Protein kinase superfamily protein) (Uncharacterized protein At2g40120),AT3g17750/MIG5_4 (Protein kinase superfamily protein) 131246,64915,127239,129231,11486 Protein kinase superfamily protein,Hypothetical Ser-Thr protein kinase (Protein kinase superfamily protein) (Uncharacterized protein At2g40120),AT3g17750/MIG5_4 (Protein kinase superfamily protein) cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777],cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],kinase activity [GO:0016301] locus:2206840;,locus:2047741;,locus:2089774;,locus:2206855;,locus:504955480; AT1G73460,AT2G40120,AT3G17750,AT1G73450,AT4G03175 kinase family Os05g0466900 protein (Fragment),Os01g0832900 protein (Putative dual-specificity tyrosine-(Y)-phosphorylation regulated kinase TbPK4),Os03g0719500 protein (Fragment) Q0DHH0,Q5QLC6,Q0DP29 Q0DHH0_ORYSJ,Q5QLC6_ORYSJ,Q0DP29_ORYSJ Os05g0466900 Os05g0466900 OSNPB_050466900,Os01g0832900 Os01g0832900 OSNPB_010832900 P0460C04.12,Os03g0719500 Os03g0719500 OSNPB_030719500 ENOG411DRE6 ARF1,ARF2-B,ARF2-A,ARFA1B,ADP-ribosylation factor A1B,T17J13.250,ARFA1F P36397,P0DH91,Q9LQC8,A0A1P8BDK6,Q9LYJ3,Q9M1P5,Q6ID97 ARF1_ARATH,ARF2B_ARATH,ARF2A_ARATH,A0A1P8BDK6_ARATH,Q9LYJ3_ARATH,Q9M1P5_ARATH,Q6ID97_ARATH ADP-ribosylation factor 1 (AtARF1),ADP-ribosylation factor 2-B (AtARF2) (ARF1-like protein U5),ADP-ribosylation factor 2-A (AtARF2),ADP-ribosylation factor A1B,ADP-ribosylation factor A1B (ADP-ribosylation factor-like protein),ADP-ribosylation factor A1E (ADP-ribosylation factor-like protein) (AT3g62290/T17J13_250),ADP-ribosylation factor A1F (At1g10630) (Similar to ADP-ribosylation factor gb|AAD17207) FUNCTION: GTP-binding protein involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes. {ECO:0000269|PubMed:12177464, ECO:0000269|PubMed:12182707, ECO:0000269|PubMed:12724547, ECO:0000269|PubMed:15659621, ECO:0000269|PubMed:17307898}.,FUNCTION: GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. R-ATH-1660514;R-ATH-421837; 20609,20593,20694,21535,20608,20623 ADP-ribosylation factor 1 (AtARF1),ADP-ribosylation factor 2-B (AtARF2) (ARF1-like protein U5),ADP-ribosylation factor 2-A (AtARF2),ADP-ribosylation factor A1B,ADP-ribosylation factor A1B (ADP-ribosylation factor-like protein),ADP-ribosylation factor A1E (ADP-ribosylation factor-like protein) (AT3g62290/T17J13_250),ADP-ribosylation factor A1F (At1g10630) (Similar to ADP-ribosylation factor gb|AAD17207) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; GTP binding [GO:0005525]; phospholipase activator activity [GO:0016004]; protein transport [GO:0015031]; small GTPase mediated signal transduction [GO:0007264]; vesicle-mediated transport [GO:0016192],Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; GTP binding [GO:0005525]; phospholipase activator activity [GO:0016004]; protein transport [GO:0015031]; small GTPase mediated signal transduction [GO:0007264]; vesicle-mediated transport [GO:0016192],Golgi apparatus [GO:0005794]; GTP binding [GO:0005525]; phospholipase activator activity [GO:0016004]; protein transport [GO:0015031]; response to cadmium ion [GO:0046686]; small GTPase mediated signal transduction [GO:0007264]; vesicle-mediated transport [GO:0016192],intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264],Golgi apparatus [GO:0005794]; GTP binding [GO:0005525]; phospholipase activator activity [GO:0016004]; small GTPase mediated signal transduction [GO:0007264],Golgi apparatus [GO:0005794]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; GTP binding [GO:0005525]; phospholipase activator activity [GO:0016004]; small GTPase mediated signal transduction [GO:0007264],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; copper ion binding [GO:0005507]; GTP binding [GO:0005525]; phospholipase activator activity [GO:0016004]; small GTPase mediated signal transduction [GO:0007264] locus:2065114;,locus:2026780;,locus:2028926;,locus:2222677;,locus:2098063;,locus:2019948; AT2G47170,AT1G70490,AT1G23490,AT5G14670,AT3G62290,AT1G10630 ADP-ribosylation factor ADP-ribosylation factor 2,ADP-ribosylation factor 1 (13 kDa cold-induced protein),Os01g0265100 protein (Putative ADP-ribosylation factor) (cDNA clone:J013098K24, full insert sequence),ADP-ribosylation factor 1 (Os07g0223100 protein) (Os07g0223400 protein) (cDNA, clone: J075171N24, full insert sequence) (cDNA, clone: J100075G09, full insert sequence),ADP-ribosylation factor (ADP-ribosylation factor, putative, expressed) (Os03g0811900 protein) P51823,Q06396,Q9LDC9,Q7F270,Q7XZG0 ARF2_ORYSJ,ARF1_ORYSJ,Q9LDC9_ORYSJ,Q7F270_ORYSJ,Q7XZG0_ORYSJ ARF Os05g0489600 LOC_Os05g41060 OJ1119_H02.17,Os01g0813400 LOC_Os01g59790 OsJ_03844 OSJNBa0085D07.10 P0425G02.41 P0432B10.14,Os01g0265100 OSNPB_010265100 P0453A06.31 P0499C11.13,OJ1118_B03.103 Os07g0223100 P0592C06.133 P0592C06.136 Os07g0223400 OSNPB_070223100 OSNPB_070223400,LOC_Os03g59740 Os03g0811900 OSJNBb0033J23.16 OSNPB_030811900 FUNCTION: GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. ENOG411DRE1 O22975,F4JQ50 LPAAT_ARATH,F4JQ50_ARATH 1-acylglycerol-3-phosphate O-acyltransferase (EC 2.3.1.51) (Lipid droplet-binding protein CGI-58 homolog),Alpha/beta-Hydrolases superfamily protein DISRUPTION PHENOTYPE: Accumulation of neutral lipid droplets with marked increase in absolute triacylglycerol levels in leaf mesophyll cells. {ECO:0000269|PubMed:20876112}. Elevated triacylglycerol levels in leaves-K. Chapman-2010 FUNCTION: Lysophosphatidic acid acyltransferase which functions in phosphatidic acid biosynthesis. Is highly specific for lysophosphatidic acid and able to use different acyl-CoA donors. May regulate neutral lipid accumulation and participate in the regulation of lipid turnover in vegetative cells. Possesses additional triacylglycerol lipase and phospholipase A2 activities in vitro. Is not active as esterase or lysophospholipase. {ECO:0000269|PubMed:19700561, ECO:0000269|PubMed:20876112}. ARA:AT4G24160-MONOMER; R-ATH-1482839; 2.3.1.51; 2.3.1.51 46526,38049 1-acylglycerol-3-phosphate O-acyltransferase (EC 2.3.1.51) (Lipid droplet-binding protein CGI-58 homolog),Alpha/beta-Hydrolases superfamily protein cytoplasm [GO:0005737]; 1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; lipase activity [GO:0016298]; lysophosphatidic acid acyltransferase activity [GO:0042171]; phospholipase A2 activity [GO:0004623]; fatty acid homeostasis [GO:0055089]; lipid homeostasis [GO:0055088]; phospholipid biosynthetic process [GO:0008654]; phospholipid homeostasis [GO:0055091]; triglyceride homeostasis [GO:0070328],hydrolase activity [GO:0016787] locus:2134996; AT4G24160 hydrolase alpha beta fold family protein Probable 1-acylglycerol-3-phosphate O-acyltransferase (EC 2.3.1.51) (Lipid droplet-binding protein CGI-58 homolog),Os09g0520200 protein Q0J0A4,A0A0P0XPU5 LPAAT_ORYSJ,A0A0P0XPU5_ORYSJ Os09g0520200 LOC_Os09g34860 P0669G04.7,Os09g0520200 OSNPB_090520200 FUNCTION: Lysophosphatidic acid acyltransferase which functions in phosphatidic acid biosynthesis. May regulate neutral lipid accumulation and participate in the regulation of lipid turnover in vegetative cells. May possess additional triacylglycerol lipase and phospholipase A2 activities in vitro (By similarity). {ECO:0000250}. ENOG411DRE0 Q9LVD3 PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250, mitochondrial 108619 Pentatricopeptide repeat-containing protein At5g57250, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2165585; AT5G57250 pentatricopeptide repeat-containing protein At5g57250 Fertility restorer-like (Os01g0263400 protein) Q5NBA9 Q5NBA9_ORYSJ P0453A06.6 Os01g0263400 OSNPB_010263400 ENOG411DRE3 Q8GXR1 Q8GXR1_ARATH Transcription initiation factor TFIID subunit (Uncharacterized protein At5g65540) (Uncharacterized protein At5g65540/K21L13_5) 68737 Transcription initiation factor TFIID subunit (Uncharacterized protein At5g65540) (Uncharacterized protein At5g65540/K21L13_5) translation initiation factor activity [GO:0003743] locus:2155710; AT5G65540 NA Expressed protein (Os03g0802300 protein),Expressed protein (Os03g0802300 protein) (Unknow protein) (cDNA clone:J013132N21, full insert sequence) Q10BW7,Q84SZ4 Q10BW7_ORYSJ,Q84SZ4_ORYSJ Os03g0802300 LOC_Os03g58780 OSNPB_030802300,LOC_Os03g58780 Os03g0802300 OSJNBa0087C10.15 OSNPB_030802300 ENOG411DRE2 AGO5 Q9SJK3 AGO5_ARATH Protein argonaute 5 FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing. {ECO:0000269|PubMed:17869110, ECO:0000269|PubMed:18342361, ECO:0000269|PubMed:18344228}. R-ATH-426486;R-ATH-426496;R-ATH-5578749; 111089 Protein argonaute 5 cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; defense response, incompatible interaction [GO:0009814]; gene silencing by RNA [GO:0031047]; regulation of transcription, DNA-templated [GO:0006355]; regulation of translation [GO:0006417]; response to virus [GO:0009615]; transcription, DNA-templated [GO:0006351]; viral gene silencing in virus induced gene silencing [GO:0060145] locus:2057851; AT2G27880 Argonaute Protein argonaute MEL1 (Protein MEIOSIS ARRESTED AT LEPTOTENE 1) (OsMEL1),Protein argonaute 13 (OsAGO13),Expressed protein (Os03g0353900 protein) (cDNA clone:J033003M11, full insert sequence),Os03g0789466 protein (Fragment) Q851R2,Q852N2,Q10LD9,A0A0P0W4J5 MEL1_ORYSJ,AGO13_ORYSJ,Q10LD9_ORYSJ,A0A0P0W4J5_ORYSJ MEL1 MEAL1 Os03g0800200 LOC_Os03g58600 OSJNBa0052F07.11,AGO13 Os03g0789500 LOC_Os03g57560 OSJNBa0087O09.9,Os03g0353900 LOC_Os03g23050 Os03g0353900 OSNPB_030353900,Os03g0789466 OSNPB_030789466 DISRUPTION PHENOTYPE: Arrest of meiosis in male and female germ cells, causing seed sterility. {ECO:0000269|PubMed:17675402}. FUNCTION: Essential for the progression of premeiotic mitosis and meiosis during sporogenesis. Regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing. May be involved in histone H3 'Lys-9' demethylation in the pericentromeric region. {ECO:0000269|PubMed:17675402}.,FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411DRE9 Q6NKU3,F4I099 Q6NKU3_ARATH,F4I099_ARATH At1g55340,Uncharacterized protein 23460,22306 At1g55340,Uncharacterized protein locus:2035691; AT1G55340 Protein of unknown function (DUF1639) Expressed protein (Os03g0807200 protein) Q84M39 Q84M39_ORYSJ LOC_Os03g59250 Os03g0807200 OSJNBa0059E14.14 OSNPB_030807200 ENOG411DRE8 MBK23.17 A0A1P8BBF8,A0A1P8BBI9 A0A1P8BBF8_ARATH,A0A1P8BBI9_ARATH Intracellular protein transporter USO1-like protein 57523,52958 Intracellular protein transporter USO1-like protein Inherit from euNOG: intracellular protein transport protein Os02g0260500 protein (Fragment),Os06g0507900 protein (Fragment) A0A0P0VH95,A0A0P0WXE1 A0A0P0VH95_ORYSJ,A0A0P0WXE1_ORYSJ Os02g0260500 OSNPB_020260500,Os06g0507900 OSNPB_060507900 ENOG411DREE CKX5,CKX1,CKX6 Q67YU0,O22213,Q9LY71,A0A1P8B0N2,F4HZ40,A0A1P8B0Q0 CKX5_ARATH,CKX1_ARATH,CKX6_ARATH,A0A1P8B0N2_ARATH,F4HZ40_ARATH,A0A1P8B0Q0_ARATH Cytokinin dehydrogenase 5 (EC 1.5.99.12) (Cytokinin oxidase 5) (AtCKX5) (AtCKX6) (CKO5),Cytokinin dehydrogenase 1 (EC 1.5.99.12) (Cytokinin oxidase 1) (AtCKX1) (CKO 1),Cytokinin dehydrogenase 6 (EC 1.5.99.12) (Cytokinin oxidase 6) (AtCKX6) (AtCKX7) (CKO6),Cytokinin oxidase/dehydrogenase 1,Cytokinin oxidase 5 FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000250, ECO:0000269|PubMed:14555694}.,FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000269|PubMed:11504909, ECO:0000269|PubMed:14555694}. MISCELLANEOUS: The enzymatic activity is significantly greater under acidic conditions in vitro. ARA:AT1G75450-MONOMER;,MetaCyc:AT2G41510-MONOMER; 1.5.99.12; 1.5.99.12 60424,64924,60000,49407,59992,72207 Cytokinin dehydrogenase 5 (EC 1.5.99.12) (Cytokinin oxidase 5) (AtCKX5) (AtCKX6) (CKO5),Cytokinin dehydrogenase 1 (EC 1.5.99.12) (Cytokinin oxidase 1) (AtCKX1) (CKO 1),Cytokinin dehydrogenase 6 (EC 1.5.99.12) (Cytokinin oxidase 6) (AtCKX6) (AtCKX7) (CKO6),Cytokinin oxidase/dehydrogenase 1,Cytokinin oxidase 5 extracellular region [GO:0005576]; extracellular space [GO:0005615]; cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cytokinin catabolic process [GO:0009823],vacuole [GO:0005773]; cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cytokinin catabolic process [GO:0009823]; meristem development [GO:0048507],extracellular space [GO:0005615]; cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cytokinin metabolic process [GO:0009690]; stomatal complex morphogenesis [GO:0010103],cytokinin dehydrogenase activity [GO:0019139]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; cytokinin metabolic process [GO:0009690] DEVELOPMENTAL STAGE: Expressed in young developing stamen primordia and later confined to the central part of growing anthers. Before and during pollination, restricted to the maturing pollen grains. {ECO:0000269|PubMed:14555694}.,DEVELOPMENTAL STAGE: Expressed during the maturation phase of stomatal guard cells but not in fully mature stomata. In the root vasculature, detected soon after germination, with a maxima around the lateral root primordia. {ECO:0000269|PubMed:14555694}. TISSUE SPECIFICITY: Expressed in the developing leaf petioles and in the rib zone of the axillary shoot meristems. In roots, expressed in the vascular cylinder within the root apical meristem and only faintly detectable in the differentiated root. {ECO:0000269|PubMed:14555694}.,TISSUE SPECIFICITY: Expressed in shoot apexes, lateral shoot meristems, growing tissues of young flowers, and weakly at the root-hypocotyl junction. {ECO:0000269|PubMed:14555694}.,TISSUE SPECIFICITY: Expressed in the vascular system of roots, of young growing leaves and of the most apical portion of the growing stem. No expression in the root apical meristem. In flowers, restricted to the vascular bundles and transmitting tissue of developing gynoeciae. {ECO:0000269|PubMed:14555694}. locus:2018437;,locus:2062714;,locus:2087423; AT1G75450,AT2G41510,AT3G63440 cytokinin Cytokinin dehydrogenase 9 (EC 1.5.99.12) (Cytokinin oxidase 9) (OsCKX9),Cytokinin dehydrogenase 4 (EC 1.5.99.12) (Cytokinin oxidase 4) (OsCKX4),Cytokinin dehydrogenase 5 (EC 1.5.99.12) (Cytokinin oxidase 5) (OsCKX5) Q75K78,Q5JLP4,Q5ZAY9 CKX9_ORYSJ,CKX4_ORYSJ,CKX5_ORYSJ CKX9 Os05g0374200 LOC_Os05g31040 OJ1005_E12.3 OsJ_18319 OSJNBa0025P09.18,CKX4 Os01g0940000 LOC_Os01g71310 B1150F11.25,CKX5 Os01g0775400 LOC_Os01g56810 P0413G02.1 P0490D09.33 FUNCTION: Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000250}. ENOG411DREA SAL1 Q42546 DPNP1_ARATH SAL1 phosphatase (3'(2'),5'-bisphosphate nucleotidase 1) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 1) (DPNPase 1) (Inositol polyphosphate 1-phosphatase 1) (IPPase 1) (Inositol-1,4-bisphosphate 1-phosphatase 1) (EC 3.1.3.57) (Protein FIERY 1) Loss-of-function mutations in SAL1 result in development- and size-independent drought tolerance: alx8 seedlings are more tolerant to PEG-6000-induced osmotic stress; leaf relative water content does not change after 12 d of drought; alx8 plants grown under drought conditions retain higher water potentials; alx8 plants remain viable 6 days longer than wild type after water withdrawal. [Plant morphology growth and development]: shorter and rounder leaves; more lobed edges; undulated surface and shorter petioles; changes to the internal structure of the leaf (disorganized vascular bundles altered cell shape less defined palisade structure smaller chloroplasts and thicker leaves); delayed bolting and flowering. [Molecular phenotype]: 1414 genes significantly up-regulated and 1033 down-regulated more than two-fold in alx8 leaf tissue relative to their expression in Col-0 wild type; increased levels of the polyamine putrescine; decreased levels of fructose galactose glucose cellobiose and a large number of unknown sugars and sugar derivatives; accumulation of unknown sugars and sugar derivatives; low levels of organic acids citrate isocitrate fumarate and malate; very low starch accumulation; lack of transitory starch granules in chloroplasts. [Stomatal morphology and dynamics]: no difference in stomatal morphology compared with the wild-type; small but significant decrease of stomatal index on the adaxial surface; similar stomatal aperture.,shortened petioles shortened hypocotyl under various sub-saturating light conditions delayed flowering time under both long-day and short-day conditions Late flowering; Abnormal leaf venation; Long root hairs; Few lateral roots under vertical growth; Sensitive to drought, freezing, ABA, and salt stress-J. Luis Micol-2010 FUNCTION: Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP. May regulate the flux of sulfur in the sulfur-activation pathway by converting PAPS to APS. May play a role in the biosynthesis of sulfate conjugates and RNA processing. Is also able to hydrolyze inositol 1,4-bisphosphate and inositol 1,3,4-trisphosphate. Could be considered as a negative regulator of abscisic acid (ABA)- and stress-responsive genes, through modulating the inositol 1,4,5-trisphosphate (IP3) turnover. Is also involved in salt tolerance. Acts as a suppressor of virus- and transgene-induced silencing. {ECO:0000269|PubMed:11485991, ECO:0000269|PubMed:17993620, ECO:0000269|PubMed:8721754}. MISCELLANEOUS: Mutation in the FRY1 gene results in super-induction of abscisic acid (ABA)- and stress-responsive genes, due to inositol 1,4,5-trisphosphate (IP3) accumulation.; MISCELLANEOUS: Substrate preference is 3'-phosphoadenosine 5'-phosphate (PAP) = adenosine 3'-phosphate 5'-phosphosulfate (PAPS)> inositol 1,4-bisphosphate >> inositol 1,4,5-trisphosphate. No activity observed against 3' or 5'-AMP, inositol monophosphate and fructose-1,6-bisphosphate. PATHWAY: Signal transduction; phosphatidylinositol signaling pathway. ARA:AT5G63980-MONOMER; 3.1.3.31;3.1.3.57;3.1.3.7; 3.1.3.7; 3.1.3.57 37564 SAL1 phosphatase (3'(2'),5'-bisphosphate nucleotidase 1) (EC 3.1.3.7) (3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase 1) (DPNPase 1) (Inositol polyphosphate 1-phosphatase 1) (IPPase 1) (Inositol-1,4-bisphosphate 1-phosphatase 1) (EC 3.1.3.57) (Protein FIERY 1) 3'(2'),5'-bisphosphate nucleotidase activity [GO:0008441]; inositol-1,4-bisphosphate 1-phosphatase activity [GO:0004441]; metal ion binding [GO:0046872]; abscisic acid-activated signaling pathway [GO:0009738]; phosphatidylinositol phosphorylation [GO:0046854]; sulfur compound metabolic process [GO:0006790] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:10205895, ECO:0000269|PubMed:11485991}. AT5G63980 Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase),Os12g0183300 protein (Fragment) Q2QWT4,A0A0N7KTP2 DPNP_ORYSJ,A0A0N7KTP2_ORYSJ Os12g0183300 LOC_Os12g08280,Os12g0183300 OSNPB_120183300 FUNCTION: Converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'- phosphate (PAP) to AMP. Regulates the flux of sulfur in the sulfur-activation pathway by converting PAPS to APS (By similarity). {ECO:0000250}. ENOG411DREB A0A1P8B3Q7,A0A1P8B3P6,Q84K40,A0A1P8B3T8,A0A1P8B3P5 A0A1P8B3Q7_ARATH,A0A1P8B3P6_ARATH,Q84K40_ARATH,A0A1P8B3T8_ARATH,A0A1P8B3P5_ARATH Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein,Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein (Uncharacterized protein At4g30820) R-ATH-113418;R-ATH-5696395;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-69202;R-ATH-69273;R-ATH-69656;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 14407,18467,20078,21236,18560 Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein,Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein (Uncharacterized protein At4g30820) holo TFIIH complex [GO:0005675]; cyclin-dependent protein serine/threonine kinase activator activity [GO:0061575]; kinase activity [GO:0016301]; nucleotide-excision repair [GO:0006289],holo TFIIH complex [GO:0005675]; cyclin-dependent protein serine/threonine kinase activator activity [GO:0061575]; kinase activity [GO:0016301]; DNA repair [GO:0006281]; nucleotide-excision repair [GO:0006289]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2126659; AT4G30820 CDK-activating kinase assembly factor Os06g0171700 protein (cDNA clone:J033143J20, full insert sequence),CDK-activating kinase assembly factor MAT1 family protein, expressed (Os11g0473100 protein) (cDNA clone:J013038D14, full insert sequence) Q5SNL8,Q2R4I6 Q5SNL8_ORYSJ,Q2R4I6_ORYSJ Os06g0171700 OsJ_20286 OSNPB_060171700 P0675A05.28,Os11g0473100 LOC_Os11g28350 Os11g0473100 OsJ_33860 OSNPB_110473100 ENOG411DREM F18O22_270 Q9SS93,Q9LT58,F4HP06,Q9C9V4,Q9LY81,F4JCJ4 Q9SS93_ARATH,Q9LT58_ARATH,F4HP06_ARATH,Q9C9V4_ARATH,Q9LY81_ARATH,F4JCJ4_ARATH Beta-1,4-N-acetylglucosaminyltransferase family protein (F4P13.16 protein) (Glycosyltransferase) (Uncharacterized protein At3g01620),Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At3g27540),Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase),Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At1g67880) (Uncharacterized protein T23K23.27),At5g14480 (Beta-1,4-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein F18O22_270),Beta-1,4-N-acetylglucosaminyltransferase family protein R-ATH-975574; 45319,45662,45917,45879,45201,13669 Beta-1,4-N-acetylglucosaminyltransferase family protein (F4P13.16 protein) (Glycosyltransferase) (Uncharacterized protein At3g01620),Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At3g27540),Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase),Beta-1,4-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At1g67880) (Uncharacterized protein T23K23.27),At5g14480 (Beta-1,4-N-acetylglucosaminyltransferase family protein) (Glycosyltransferase) (Uncharacterized protein F18O22_270),Beta-1,4-N-acetylglucosaminyltransferase family protein integral component of membrane [GO:0016021]; beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity [GO:0003830]; protein N-linked glycosylation [GO:0006487],membrane [GO:0016020]; beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity [GO:0003830]; protein N-linked glycosylation [GO:0006487] locus:2084173;,locus:2091448;,locus:2031800;,locus:2200191;,locus:2145733;,locus:504955860; AT3G01620,AT3G27540,AT1G12990,AT1G67880,AT5G14480,AT3G26445 glycosyl transferase family 17 protein Glycosyl transferase-like protein (Os02g0594900 protein),OSJNBa0044K18.7 protein (Os04g0477500 protein) (cDNA clone:001-123-F04, full insert sequence) (cDNA clone:J013106K01, full insert sequence) (cDNA clone:J023131C16, full insert sequence),Os02g0595100 protein (Fragment) Q6ZI62,Q7XK38,A0A0P0VL50 Q6ZI62_ORYSJ,Q7XK38_ORYSJ,A0A0P0VL50_ORYSJ Os02g0594900 OJ1126_D09.18 OSNPB_020594900,Os04g0477500 Os04g0477500 OsJ_15187 OSJNBa0044K18.7 OSNPB_040477500,Os02g0595100 OSNPB_020595100 ENOG411DREN RZPF34,AtRZPF34 Q9FFB6,F4JY60,F4JY61,F4JY59,A0A1P8BAG6 ZFP34_ARATH,F4JY60_ARATH,F4JY61_ARATH,F4JY59_ARATH,A0A1P8BAG6_ARATH E3 ubiquitin-protein ligase RZFP34 (EC 2.3.2.27) (CHY zinc-finger and RING protein 1) (RING zinc-finger protein 34) (RZFP34 protein homolog) (AtRZPF34),CHY-type/CTCHY-type/RING-type Zinc finger protein DISRUPTION PHENOTYPE: Decreased relative stomata aperture under normal growth conditions (PubMed:25002225). No visible phenotype under normal growth conditions, but mutant plants display decreased sensitivity to abscisic acid (ABA) during seed germination (PubMed:26508764). {ECO:0000269|PubMed:25002225, ECO:0000269|PubMed:26508764}. FUNCTION: Possesses E3 ubiquitin-protein ligase activity in vitro. Mediates mainly 'Lys-48'-linked polyubiquitination. Promotes abscisic acid (ABA)-induced stomatal closure, reactive oxygen species (ROS) production and drought tolerance (PubMed:26508764). Involved in the regulation of stomatal aperture (PubMed:25002225). {ECO:0000269|PubMed:25002225, ECO:0000269|PubMed:26508764}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. R-ATH-110320; 2.3.2.27 33549,35511,34854,36568,28147 E3 ubiquitin-protein ligase RZFP34 (EC 2.3.2.27) (CHY zinc-finger and RING protein 1) (RING zinc-finger protein 34) (RZFP34 protein homolog) (AtRZPF34),CHY-type/CTCHY-type/RING-type Zinc finger protein endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; transferase activity [GO:0016740]; zinc ion binding [GO:0008270]; protein ubiquitination [GO:0016567]; regulation of stomatal opening [GO:1902456],zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Expressed in roots, leaves, and anthers and stigma of open flowers. {ECO:0000269|PubMed:26508764}. locus:2172656;,locus:2179474; AT5G22920,AT5G25560 RING finger and CHY zinc finger domain-containing protein Probable E3 ubiquitin-protein ligase RZFP34 (EC 2.3.2.27) (OsRFP1) (RING zinc-finger protein 34) (OsRZFP34),CHY zinc finger family protein, expressed (Os10g0456800 protein) (cDNA clone:J023077E12, full insert sequence),CHY zinc finger family protein, expressed (Os10g0456800 protein) (cDNA clone:J023142C17, full insert sequence),Os01g0719100 protein (Fragment),Os03g0145900 protein Q5JL96,Q337P2,Q7XDQ1,A0A0P0V7G1,A0A0N7KGK5 ZFP34_ORYSJ,Q337P2_ORYSJ,Q7XDQ1_ORYSJ,A0A0P0V7G1_ORYSJ,A0A0N7KGK5_ORYSJ RZFP34 RFP1 Os01g0719100 LOC_Os01g52110 OsJ_03270 P0480C01.28-1,LOC_Os10g31850 Os10g0456800 OsJ_31771 OSNPB_100456800,Os10g0456800 LOC_Os10g31850 OSNPB_100456800,Os01g0719100 OSNPB_010719100,Os03g0145900 OSNPB_030145900 DISRUPTION PHENOTYPE: Decreased relative stomata aperture under normal growth conditions. {ECO:0000269|PubMed:25002225}. FUNCTION: Possesses transactivation activity in yeast cells (Ref.1). Involved in the regulation of stomatal aperture. May modulate the expression of genes that control stomata opening during heat shock or drought stress (PubMed:25002225). {ECO:0000269|PubMed:25002225, ECO:0000269|Ref.1}. ENOG411DREH MCA23.12 Q9FIK1,A0A1P8B9X9 Y5780_ARATH,A0A1P8B9X9_ARATH BTB/POZ domain-containing protein At5g47800,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 63302,76088 BTB/POZ domain-containing protein At5g47800,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:2160877; AT5G47800 BTB POZ domain-containing protein Os09g0266600 protein (Fragment) Q0J331 Q0J331_ORYSJ Os09g0266600 OSNPB_090266600 ENOG411DREU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Speckle-type POZ protein Os06g0251200 protein (Putative speckle-type POZ protein) (cDNA clone:J013089M24, full insert sequence),Os06g0668400 protein (Zinc finger POZ domain protein-like) (cDNA clone:002-137-C07, full insert sequence),Os06g0669225 protein,Os08g0198300 protein (Fragment),Os06g0668300 protein (Fragment) Q653N6,Q655S9,Q655S3,A0A0P0XCU9,A0A0P0X026 Q653N6_ORYSJ,Q655S9_ORYSJ,Q655S3_ORYSJ,A0A0P0XCU9_ORYSJ,A0A0P0X026_ORYSJ Os06g0251200 OsJ_20831 OSNPB_060251200 P0431E05.16,Os06g0668400 OSNPB_060668400 P0637D03.53 P0686E06.16,Os06g0669225 OsJ_22307 OSNPB_060669225 P0686E06.27,Os08g0198300 OSNPB_080198300,Os06g0668300 OSNPB_060668300 ENOG411DRET TGH Q8GXN9 TGH_ARATH G patch domain-containing protein TGH (Protein TOUGH) DISRUPTION PHENOTYPE: Developmental defects, elongation defects of all organs, reduced plant height, triple cotyledons phenotype, reduced vascularization and infertility due to failure to produce pollen. {ECO:0000269|PubMed:16024589}. Adult homozygous tgh mutant plants have a reduced stature and significantly smaller lanceolate leaves. Anthers failed to elongate and produce pollen. Almost complete infertility. At the seedling stage tgh mutant seedlings are recognizable by developmental defects including triple cotyledons altered cotyledon shape and reduced elongation growth in dark-grown seedlings. The triple cotyledon phenotype is however not fully penetrant (e.g. only 7 of 362 progeny seedlings of a TGH/tgh-1 parent line displayed the triple cotyledon phenotype corresponding to a penetrance of 7.7%). tgh mutants have an imperfect vascular system with differentiated but frequently unconnected vascular strands which is cuased by a defect in the initiation of vascular development. Low penetrance of increased cotyledon number; Abnormal cotyledon shape; Dwarf; Small, lanceolate leaves; Short, sterile anthers; Severely reduced fertility; Reduced vascularization-C. Schwechheimer-2005 FUNCTION: Functions as component of microRNA (miRNA) and small interfering RNA (siRNA) biogenesis. May assist DCL1 and DCL4 to efficiently process and/or recruit the precursors of miRNAs and siRNAs. In the miRNA biogenesis pathway, associates with the DCL1 complex that processes primary miRNAs (pri-miRNAs) into miRNAs. Binds pri-miRNAs and precursor miRNAs (pre-miRNAs). Is required for the interaction between pri-miRNAs and DRB1 (PubMed:22802657). Required for general proper plant growth and, in particular, initiation of vascular development. Interacts genetically with AMP1, a glutamate carboxypeptidase involved in the regulation of meristem function (PubMed:16024589). {ECO:0000269|PubMed:16024589, ECO:0000269|PubMed:22802657}. 104934 G patch domain-containing protein TGH (Protein TOUGH) nuclear speck [GO:0016607]; nucleus [GO:0005634]; pre-miRNA binding [GO:0070883]; primary miRNA binding [GO:0070878]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; phloem or xylem histogenesis [GO:0010087]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; production of siRNA involved in RNA interference [GO:0030422]; regulation of growth [GO:0040008]; RNA processing [GO:0006396] TISSUE SPECIFICITY: Expressed in vasculature of cotyledons and leaves, young meristematic tissues, trichomes and pistils. {ECO:0000269|PubMed:16024589}. locus:2178302; AT5G23080 G patch domain-containing protein G patch domain-containing protein TGH homolog (Protein TOUGH homolog) Q67VW6 TGHH_ORYSJ Os06g0489200 LOC_Os06g29400 OsJ_21406 P0583E12.23 FUNCTION: Functions as component of microRNA (miRNA) and small interfering RNA (siRNA) biogenesis. May assist Dicer-like (DCL) proteins to efficiently process and/or recruit the precursors of miRNAs and siRNAs. {ECO:0000250|UniProtKB:Q8GXN9}. ENOG411DREW EXO70D3,ATEXO70D1,ATEXO70D2,EXO70F1 Q9LJH9,Q9C9E5,Q9SYG5,F4K8Y6 Q9LJH9_ARATH,Q9C9E5_ARATH,Q9SYG5_ARATH,F4K8Y6_ARATH Exocyst subunit exo70 family protein D3,Exocyst subunit exo70 family protein D1 (Uncharacterized protein T10D10.6),At1g54090 (Exocyst subunit exo70 family protein D2) (F15I1.17 protein) (Uncharacterized protein At1g54090),Exocyst subunit exo70 family protein F1 R-ATH-5620916; 70546,71460,70771,76617 Exocyst subunit exo70 family protein D3,Exocyst subunit exo70 family protein D1 (Uncharacterized protein T10D10.6),At1g54090 (Exocyst subunit exo70 family protein D2) (F15I1.17 protein) (Uncharacterized protein At1g54090),Exocyst subunit exo70 family protein F1 exocyst [GO:0000145]; exocytosis [GO:0006887],cytosol [GO:0005829]; exocyst [GO:0000145]; exocytosis [GO:0006887],cytosol [GO:0005829]; exocyst [GO:0000145]; nucleus [GO:0005634]; exocytosis [GO:0006887],cytosol [GO:0005829]; exocyst [GO:0000145]; plasma membrane [GO:0005886]; exocytosis [GO:0006887] locus:2087447;,locus:2194022;,locus:2014355;,locus:2177532; AT3G14090,AT1G72470,AT1G54090,AT5G50380 exocyst complex component Os09g0439600 protein (Putative leucine zipper-containing protein),OSJNBa0072D21.9 protein (Os04g0382200 protein),Os02g0101350 protein,Os02g0505400 protein (Putative leucine zipper-containing protein) (cDNA clone:J013108M03, full insert sequence) (cDNA clone:J033108L10, full insert sequence),Os01g0921400 protein,Os08g0455700 protein (Fragment) Q69P90,Q7XVB9,B9F1N5,Q6K647,A0A0P0VC27,A0A0P0XGN5 Q69P90_ORYSJ,Q7XVB9_ORYSJ,B9F1N5_ORYSJ,Q6K647_ORYSJ,A0A0P0VC27_ORYSJ,A0A0P0XGN5_ORYSJ Os09g0439600 Os09g0439600 OJ1344_B01.18 OSNPB_090439600 P0556H01.34,Os04g0382200 Os04g0382200 OSJNBa0072D21.9 OSNPB_040382200,Os02g0101350 OsJ_04990 OSNPB_020101350,OJ1003_F04.39-1 Os02g0505400 OsJ_06848 OSNPB_020505400,Os01g0921400 OSNPB_010921400,Os08g0455700 OSNPB_080455700 ENOG411DREQ AtCGL160 O82279 O82279_ARATH ATP synthase protein I-like protein (At2g31040/T16B12.15) (Expressed protein) FUNCTION: Facilitates the assembly of the membrane proton channel of the chloroplastic F-type ATPase. Specifically required for the efficient assembly and integration of the CF(0) subunit c into the chloroplastic ATPase complex in the thylakoid membrane. {ECO:0000269|PubMed:24664203}. 38610 ATP synthase protein I-like protein (At2g31040/T16B12.15) (Expressed protein) chloroplast thylakoid [GO:0009534]; chloroplast proton-transporting ATP synthase complex assembly [GO:0033614] locus:2052836; AT2G31040 ATP synthase protein I Os01g0673800 protein,Os01g0673800 protein (cDNA clone:J013110J02, full insert sequence),Os01g0673800 protein (Fragment) Q5QMQ2,Q5QMQ3,A0A0P0V6F4 Q5QMQ2_ORYSJ,Q5QMQ3_ORYSJ,A0A0P0V6F4_ORYSJ P0007F06.35-2 P0485G01.25-2 Os01g0673800 OSNPB_010673800,P0007F06.35-1 Os01g0673800 P0485G01.25-1 OsJ_02976 OSNPB_010673800,Os01g0673800 OSNPB_010673800 ENOG411DREP Q9LFT2 Q9LFT2_ARATH At5g15880 (Golgin family A protein) (Uncharacterized protein At5g15880) (Uncharacterized protein F1N13_20) 39569 At5g15880 (Golgin family A protein) (Uncharacterized protein At5g15880) (Uncharacterized protein F1N13_20) integral component of membrane [GO:0016021] locus:2146052; AT5G15880 NA Os09g0108400 protein,Os09g0108500 protein Q6YWB8,Q6YWB7,A0A0P0XJ59 Q6YWB8_ORYSJ,Q6YWB7_ORYSJ,A0A0P0XJ59_ORYSJ P0501E09.13-1 P0584E12.40-1 Os09g0108400 OSNPB_090108400,Os09g0108500 OSNPB_090108500 P0501E09.14 P0584E12.41,Os09g0108400 OSNPB_090108400 ENOG411DRES YKT61,YKT62 Q9ZRD6,Q9LVM9,F4KDI1 YKT61_ARATH,YKT62_ARATH,F4KDI1_ARATH VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1),VAMP-like protein YKT62 (AtYKT62) (ATGP1-like protein),SNARE-like superfamily protein FUNCTION: May be involved in the secretory pathway. {ECO:0000250}. R-ATH-6807878;R-ATH-6811438; 22544,22909,24906 VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1),VAMP-like protein YKT62 (AtYKT62) (ATGP1-like protein),SNARE-like superfamily protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] locus:2161288;,locus:2155826; AT5G58060,AT5G58180 VAMP-like protein Os01g0964000 protein (Putative NTGP1) (cDNA clone:001-007-D09, full insert sequence) (cDNA clone:006-303-C07, full insert sequence),Os01g0866300 protein (Putative geranylgeranylated protein NTGP1) (cDNA clone:006-207-F07, full insert sequence) Q5JMS3,Q5N9F2 Q5JMS3_ORYSJ,Q5N9F2_ORYSJ Os01g0964000 OsJ_04869 OSNPB_010964000 P0483G10.42,Os01g0866300 Os01g0866300 OSNPB_010866300 P0505D12.34 ENOG411DRER Q9ZVN2 Y1457_ARATH Acyltransferase-like protein At1g54570, chloroplastic (EC 2.3.1.-) 2.3.1.- 78204 Acyltransferase-like protein At1g54570, chloroplastic (EC 2.3.1.-) chloroplast [GO:0009507]; plastoglobule [GO:0010287]; diacylglycerol O-acyltransferase activity [GO:0004144]; phytol metabolic process [GO:0033306]; triglyceride biosynthetic process [GO:0019432] locus:2199481; AT1G54570 acyltransferase-like protein At1g54570 Esterase/lipase/thioesterase-like protein (Os01g0361500 protein),Esterase/lipase/thioesterase-like protein (Os01g0362100 protein) Q5ZC24,Q5ZC21 Q5ZC24_ORYSJ,Q5ZC21_ORYSJ Os01g0361500 OSNPB_010361500 P0460H02.26,Os01g0362100 OsJ_01754 OSNPB_010362100 P0460H02.32 ENOG411DREX Q3ECD0 PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic (EC 5.4.99.-) (RNA pseudouridylate synthase 2) (RNA-uridine isomerase 2) ARA:AT1G76050-MONOMER; 5.4.99.- 46715 RNA pseudouridine synthase 2, chloroplastic (EC 5.4.99.-) (RNA pseudouridylate synthase 2) (RNA-uridine isomerase 2) chloroplast [GO:0009507]; cytosol [GO:0005829]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; enzyme-directed rRNA pseudouridine synthesis [GO:0000455] locus:2204355; AT1G76050 RNA pseudourine synthase 2 RNA pseudouridine synthase 2, chloroplastic (EC 5.4.99.-) (RNA pseudouridylate synthase 2) (RNA-uridine isomerase 2) Q5Z8P2 PUS2_ORYSJ Os06g0717400 LOC_Os06g50360 OsJ_22675 P0481E08.45 P0541C02.12 ENOG411DREZ CAP1 O65902,A0A1P8B7W9 ACAP1_ARATH,A0A1P8B7W9_ARATH Cyclase-associated protein 1 (AtCAP1) (Adenylyl cyclase-associated protein),Adenylyl cyclase-associated protein DISRUPTION PHENOTYPE: Stunted growth and reduced pollen germination and growth. {ECO:0000269|PubMed:17635992}. FUNCTION: Actin monomer binding protein that accelerates the exchange of ADP for ATP. Regulates the pool of unpolymerized ATP-actin. Key intermediate between actin-depolymerizing factor (ADF)-mediated disassembly and the profilin-based nucleation and elongation machinery. {ECO:0000269|PubMed:11826305, ECO:0000269|PubMed:17538023, ECO:0000269|PubMed:17635992}. R-ATH-6798695; 50970,58486 Cyclase-associated protein 1 (AtCAP1) (Adenylyl cyclase-associated protein),Adenylyl cyclase-associated protein cortical actin cytoskeleton [GO:0030864]; cytosol [GO:0005829]; actin binding [GO:0003779]; adenylate cyclase binding [GO:0008179]; actin cytoskeleton organization [GO:0030036]; actin polymerization or depolymerization [GO:0008154]; establishment or maintenance of cell polarity [GO:0007163]; regulation of adenylate cyclase activity [GO:0045761]; signal transduction [GO:0007165]; unidimensional cell growth [GO:0009826],actin binding [GO:0003779]; cytoskeleton organization [GO:0007010] TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, stems, flowers, pollen and shoots. Not detected in siliques. {ECO:0000269|PubMed:11826305, ECO:0000269|PubMed:17538023}. locus:2139539; AT4G34490 adenylyl cyclase-associated protein Adenylyl cyclase-associated protein Q10DR8,Q6ZAC2 Q10DR8_ORYSJ,Q6ZAC2_ORYSJ Os03g0722600 LOC_Os03g51250 OSNPB_030722600,Os08g0447900 Os08g0447900 OsJ_27511 OSNPB_080447900 P0409A07.16 P0429B05.37 ENOG411DXRJ Q8GZ85 Q8GZ85_ARATH Propionyl-CoA carboxylase (Uncharacterized protein At1g01770/T1N6_13) 69000 Propionyl-CoA carboxylase (Uncharacterized protein At1g01770/T1N6_13) locus:2198195; AT1G01770 Protein of unknown function (DUF1446) Os07g0457300 protein (cDNA clone:J033075C10, full insert sequence) Q7EY96 Q7EY96_ORYSJ Os07g0457300 Os07g0457300 OSJNBa0027N13.128 OSNPB_070457300 ENOG411DXRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os03g0140200 protein Q0DVA6 Q0DVA6_ORYSJ Os03g0140200 OSNPB_030140200 ENOG411DXRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0499850 protein A0A0P0X6Q4 A0A0P0X6Q4_ORYSJ Os07g0499850 OSNPB_070499850 ENOG411DXRM PDX2 Q8LAD0 PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2 (AtPDX2) (EC 4.3.3.6) (Protein EMBRYO DEFECTIVE 2407) (Pyridoxal 5'-phosphate synthase glutaminase subunit) (EC 3.5.1.2) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:16157873}. Heterozygous plants consistently display an albino seed phenotype (25%) which represent the homozygous population. Homozygous pdx2.1 seeds are developmentally delayed compared to wild-type and heterozygous siblings. The developmental arrest occurs at the globular stage of embryo developments. Progress to heart stage is never observed. The arrest in development is explained by the assumption that during the early stages of embryogenesis the surrounding maternal tissues supply vitamin B6 among other nutrients but that the globular to heart transition may be critical in the conversion from heterotrophy to autotrophy.,Unless the pdx2 plants were continuously watered with vitamin B6 they became chlorotic and died.,Heterozygous plants consistently display an albino seed phenotype (25%) which represent the homozygous population. Homozygous pdx2.2 seeds are developmentally delayed compared to wild-type and heterozygous siblings. The developmental arrest occurs at the globular stage of embryo developments. Progress to heart stage is never observed. The arrest in development is explained by the assumption that during the early stages of embryogenesis the surrounding maternal tissues supply vitamin B6 among other nutrients but that the globular to heart transition may be critical in the conversion from heterotrophy to autotrophy. Embryo defective; Globular-D. Meinke-2003 FUNCTION: Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PDX1. Involved in the indirect resistance to singlet oxygen-generating photosensitizers. {ECO:0000269|PubMed:16157873, ECO:0000269|PubMed:17468224}. MISCELLANEOUS: In plants, synthesis of vitamin B6 does not involve deoxyxylulose 5-phosphate but utilizes intermediates from the pentose phosphate pathway and from glycolysis.; MISCELLANEOUS: Vitamin B6 is an essential quencher of singlet oxygen in plants, that can protect cellular membranes from lipid peroxidation. PATHWAY: Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis. ARA:AT5G60540-MONOMER;MetaCyc:AT5G60540-MONOMER; 4.3.3.6; 3.5.1.2 27438 Probable pyridoxal 5'-phosphate synthase subunit PDX2 (AtPDX2) (EC 4.3.3.6) (Protein EMBRYO DEFECTIVE 2407) (Pyridoxal 5'-phosphate synthase glutaminase subunit) (EC 3.5.1.2) cytosol [GO:0005829]; glutaminase complex [GO:1903600]; glutaminase activity [GO:0004359]; protein heterodimerization activity [GO:0046982]; pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity [GO:0036381]; glutamine metabolic process [GO:0006541]; pyridoxal phosphate biosynthetic process [GO:0042823]; pyridoxine metabolic process [GO:0008614]; vitamin B6 biosynthetic process [GO:0042819] TISSUE SPECIFICITY: Strongly expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:16766694}. locus:2175083; AT5G60540 pyridoxal biosynthesis protein Os02g0130100 protein (Putative amidotransferase) (cDNA clone:J033103H03, full insert sequence) Q6Z6Y1 Q6Z6Y1_ORYSJ Os02g0130100 OJ1007_D04.2 OsJ_05242 OSNPB_020130100 P0576F08.33 ENOG411DXRB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 15 (OsPP2C15) (EC 3.1.3.16),Probable protein phosphatase 2C 40 (OsPP2C40) (EC 3.1.3.16),Os04g0449400 protein (Fragment) Q6YTI2,Q7XTC7,A0A0P0WBB1 P2C15_ORYSJ,P2C40_ORYSJ,A0A0P0WBB1_ORYSJ Os02g0567200 LOC_Os02g35910 OsJ_07193 P0020D05.19,Os04g0449400 LOC_Os04g37660 OSJNBa0064H22.20,Os04g0449400 OSNPB_040449400 ENOG411DXRC MFC19.17 A0A1P8B9J5,Q9FHI6,A0A1P8B9I9,A0A1P8B9J0 A0A1P8B9J5_ARATH,Q9FHI6_ARATH,A0A1P8B9I9_ARATH,A0A1P8B9J0_ARATH RNI-like superfamily protein 85782,87696,86959,86518 RNI-like superfamily protein plasma membrane [GO:0005886]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2163578; AT5G45500 NA NBS-LRR resistance protein RGH1-like (Os01g0799000 protein) Q8LJ95 Q8LJ95_ORYSJ Os01g0799000 Os01g0799000 OsJ_03759 OSNPB_010799000 P0691E06.16 ENOG411DRWV MBK20.2 Q5PP39,A0A1P8BF86 Q5PP39_ARATH,A0A1P8BF86_ARATH At5g07590 (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein 51853,43695 At5g07590 (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein locus:2160309; AT5G07590 WD repeat-containing protein Os10g0563300 protein (Putative WD40 protein) (WD-repeat protein 8, putative, expressed) Q7XC41 Q7XC41_ORYSJ Os10g0563300 LOC_Os10g41370 Os10g0563300 OsJ_32477 OSJNBa0027P10.14 OSNPB_100563300 ENOG411DXRZ AIL1 Q1PFE1 AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 (Protein AINTEGUMENTA-LIKE 1) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 47133 AP2-like ethylene-responsive transcription factor AIL1 (Protein AINTEGUMENTA-LIKE 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. locus:2030265; AT1G72570 Transcription factor NA NA NA NA NA NA NA ENOG411DXRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0482500 protein) (cDNA clone:J013145N02, full insert sequence) Q2QQV4 Q2QQV4_ORYSJ LOC_Os12g29740 Os12g0482500 OSNPB_120482500 ENOG411DXRS FAD-OXR Q9SUC6 BBE22_ARATH Berberine bridge enzyme-like 22 (AtBBE-like 22) (EC 1.1.1.-) ARA:AT4G20860-MONOMER; 1.1.1.- 60410 Berberine bridge enzyme-like 22 (AtBBE-like 22) (EC 1.1.1.-) cytosol [GO:0005829]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity, acting on CH-OH group of donors [GO:0016614]; response to jasmonic acid [GO:0009753] TISSUE SPECIFICITY: Accumulates in cell walls of etiolated hypocotyls. {ECO:0000269|PubMed:18796151}. locus:2133044; AT4G20860 domain-containing protein NA NA NA NA NA NA NA ENOG411DRWB VPS9A,VPS9B Q9LT31,F4KCK0,F4JCD2 VPS9A_ARATH,F4KCK0_ARATH,F4JCD2_ARATH Vacuolar protein sorting-associated protein 9A (AtVSP9a),Vacuolar protein sorting-associated 9A-like protein,Vacuolar sorting protein 9 (VPS9) domain-containing protein DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. Embryogenesis arrested at the torpedo stage. {ECO:0000269|PubMed:18055610}. Embryo defective; Cotyledon-A. Nakano-2007 FUNCTION: Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1. {ECO:0000269|PubMed:18055610, ECO:0000269|PubMed:20833725}. R-ATH-8876198; 57898,48777,42359 Vacuolar protein sorting-associated protein 9A (AtVSP9a),Vacuolar protein sorting-associated 9A-like protein,Vacuolar sorting protein 9 (VPS9) domain-containing protein cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activator activity [GO:0005096]; Rho guanyl-nucleotide exchange factor activity [GO:0005089]; cell plate assembly [GO:0000919]; cell wall biogenesis [GO:0042546]; embryo development ending in seed dormancy [GO:0009793]; post-embryonic root development [GO:0048528] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18055610}. locus:2092211;,locus:2184727; AT3G19770,AT5G09320 Vacuolar protein sorting-associated protein Os03g0262900 protein (Vacuolar sorting protein 9 domain containing protein, expressed),Os03g0262900 protein Q10NQ3,A0A0P0VVZ5 Q10NQ3_ORYSJ,A0A0P0VVZ5_ORYSJ Os03g0262900 LOC_Os03g15650 OsJ_10226 OSNPB_030262900,Os03g0262900 OSNPB_030262900 ENOG411DXR8 Q9LN10 Q9LN10_ARATH Cytochrome B561, amino-terminal protein (T6D22.6) (Uncharacterized protein At1g07970) 75717 Cytochrome B561, amino-terminal protein (T6D22.6) (Uncharacterized protein At1g07970) integral component of membrane [GO:0016021] locus:2205155; AT1G07970 Cytochrome B561 N terminal Expressed protein (Os03g0288800 protein) Q10MZ2 Q10MZ2_ORYSJ Os03g0288800 LOC_Os03g17950 Os03g0288800 OSNPB_030288800 ENOG411DXR6 AIP2 Q8RXD3 AIP2_ARATH E3 ubiquitin-protein ligase AIP2 (EC 2.3.2.27) (ABI3-interacting protein 2) (RING-type E3 ubiquitin transferase AIP2) DISRUPTION PHENOTYPE: Hypersensitivity to abscisic acid (ABA). {ECO:0000269|PubMed:15998807}. Sensitive to ABA-N. Chua-2005 FUNCTION: E3 ubiquitin-protein ligase that acts as a negative regulator of abscisic acid (ABA) signaling. Mediates ubiquitination and subsequent proteasomal degradation of the transcription factor ABI3. {ECO:0000269|PubMed:15644464, ECO:0000269|PubMed:15998807}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34807 E3 ubiquitin-protein ligase AIP2 (EC 2.3.2.27) (ABI3-interacting protein 2) (RING-type E3 ubiquitin transferase AIP2) cytosol [GO:0005829]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination [GO:0016567]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Highly expressed in leaves and at lower levels in flowers and seeds. {ECO:0000269|PubMed:10743655}. locus:2147152; AT5G20910 E3 ubiquitin-protein ligase Os09g0434200 protein (Fragment) A0A0P0XNI1 A0A0P0XNI1_ORYSJ Os09g0434200 OSNPB_090434200 ENOG411DXR5 UNE6 Q940U9,A0A1P8BD42,A0A1I9LRM4,F4IZU3,A0A1I9LRM5 Q940U9_ARATH,A0A1P8BD42_ARATH,A0A1I9LRM4_ARATH,F4IZU3_ARATH,A0A1I9LRM5_ARATH AT5g17440/K3M16_10 (LUC7 related protein),LUC7 related protein 47228,32603,56980,47355,38407 AT5g17440/K3M16_10 (LUC7 related protein),LUC7 related protein U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; mRNA binding [GO:0003729]; mRNA splice site selection [GO:0006376],U1 snRNP [GO:0005685]; mRNA binding [GO:0003729]; mRNA splice site selection [GO:0006376],cytosol [GO:0005829]; U1 snRNP [GO:0005685]; U2-type prespliceosome [GO:0071004]; mRNA binding [GO:0003729]; double fertilization forming a zygote and endosperm [GO:0009567]; mRNA splice site selection [GO:0006376] locus:2157497;,locus:2099674; AT5G17440,AT3G03340 RNA-binding protein Luc7-like Os03g0843500 protein (RNA-binding protein Luc7-like 2, putative, expressed) (Sarcoplasmic reticulum protein (With alternative splicing)) (cDNA clone:J033057K08, full insert sequence),Os02g0605600 protein (Putative salt tolerance protein 3) (cDNA clone:J013052G16, full insert sequence) Q75LD6,Q6K8R4 Q75LD6_ORYSJ,Q6K8R4_ORYSJ OSJNBa0032G11.7 LOC_Os03g62640 Os03g0843500 OSNPB_030843500,Os02g0605600 OJ1058_F07.16 OsJ_07446 OSNPB_020605600 ENOG411EINH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EINI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0220700 protein (Fragment) A0A0P0Y046 A0A0P0Y046_ORYSJ Os11g0220700 OSNPB_110220700 ENOG411EINJ Q2V4N6 DF268_ARATH Defensin-like protein 268 11697 Defensin-like protein 268 extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023074; AT1G13605 NA NA NA NA NA NA NA NA ENOG411EINK LCR36,LCR22,LCR21,LCR35,LCR23 P82751,Q9M0F3,P82735,P82750,P82737 DF155_ARATH,DF157_ARATH,DF156_ARATH,DF154_ARATH,DF158_ARATH Defensin-like protein 155 (Low-molecular-weight cysteine-rich protein 36) (Protein LCR36),Putative defensin-like protein 157 (Putative low-molecular-weight cysteine-rich protein 22) (Protein LCR22),Defensin-like protein 156 (Low-molecular-weight cysteine-rich protein 21) (Protein LCR21),Putative defensin-like protein 154 (Putative low-molecular-weight cysteine-rich protein 35) (Protein LCR35),Putative defensin-like protein 158 (Putative low-molecular-weight cysteine-rich protein 23) (Protein LCR23) 8272,8390,9088,8405,8532 Defensin-like protein 155 (Low-molecular-weight cysteine-rich protein 36) (Protein LCR36),Putative defensin-like protein 157 (Putative low-molecular-weight cysteine-rich protein 22) (Protein LCR22),Defensin-like protein 156 (Low-molecular-weight cysteine-rich protein 21) (Protein LCR21),Putative defensin-like protein 154 (Putative low-molecular-weight cysteine-rich protein 35) (Protein LCR35),Putative defensin-like protein 158 (Putative low-molecular-weight cysteine-rich protein 23) (Protein LCR23) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] TISSUE SPECIFICITY: Expressed in flower buds, but not in stems, roots or rosette leaves. {ECO:0000269|PubMed:11437247}. locus:1009023358;,locus:2118214;,locus:1009023386;,locus:1009023235;,locus:1009023319; AT4G09153,AT4G29280,AT4G29283,AT2G22121,AT4G29273 Low-molecular-weight cysteine-rich NA NA NA NA NA NA NA ENOG411EINM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EINN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EINA Q3E7S2 FB312_ARATH F-box protein At1g19070 9272 F-box protein At1g19070 locus:2011326; AT1G19070 Inherit from euNOG: - F-box domain and LRR containing protein Os11g0538300 protein,Os11g0538350 protein B9GB18,B9GB19 B9GB18_ORYSJ,B9GB19_ORYSJ Os11g0538300 OsJ_34139 OSNPB_110538300,Os11g0538350 OsJ_34140 OSNPB_110538350 ENOG411EINC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0795600 protein (cDNA clone:002-175-D05, full insert sequence),Os01g0796300 protein,Os01g0795832 protein,Os01g0795900 protein Q5ZBR3,Q8S1H0,A0A0P0V959,A0A0P0V978 Q5ZBR3_ORYSJ,Q8S1H0_ORYSJ,A0A0P0V959_ORYSJ,A0A0P0V978_ORYSJ Os01g0795600 OsJ_03745 OSNPB_010795600 P0699H05.13,Os01g0796300 OsJ_03748 OSNPB_010796300 P0699H05.25,Os01g0795832 OSNPB_010795832,Os01g0795900 OSNPB_010795900 ENOG411EIND RGF2 Q6DSU1,A0A1P8AUC9 RGF2_ARATH,A0A1P8AUC9_ARATH Root meristem growth factor 2 (AtRGF2),Root meristem growth factor-like protein DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with other RGF genes. Triple mutant rgf1-rgf2-rgf3 shows a decreased meristematic cell number resulting in a short root phenotype. {ECO:0000269|PubMed:20798316}. FUNCTION: Maintains the postembryonic root stem cell niche. {ECO:0000269|PubMed:20798316}. 12385,11470 Root meristem growth factor 2 (AtRGF2),Root meristem growth factor-like protein extracellular space [GO:0005615]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; positive regulation of cell proliferation [GO:0008284]; regulation of root meristem growth [GO:0010082] TISSUE SPECIFICITY: Expressed only in the quiescent center, the columella stem cells and the innermost layer of central columella cells. {ECO:0000269|PubMed:20798316}. locus:2009982; AT1G13620 NA NA NA NA NA NA NA NA ENOG411EINE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EINF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EING NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EINX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EINY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EINZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EINP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0573950 protein (Fragment),Os01g0651866 protein (Fragment) A0A0P0WQU2,A0A0P0V5Z7 A0A0P0WQU2_ORYSJ,A0A0P0V5Z7_ORYSJ Os05g0573950 OSNPB_050573950,Os01g0651866 OSNPB_010651866 ENOG411EINQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EINR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kinesin family member NA NA NA NA NA NA NA ENOG411EINS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EINT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EINU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0411250 protein A0A0P0X571 A0A0P0X571_ORYSJ Os07g0411250 OSNPB_070411250 ENOG411EINV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411EINW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ycf1 NA NA NA NA NA NA NA ENOG411EIN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0539000 protein (Fragment) A0A0P0Y2U6 A0A0P0Y2U6_ORYSJ Os11g0539000 OSNPB_110539000 ENOG411EIN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0319150 protein,Os12g0247533 protein A0A0P0W906,A0A0P0Y8J6 A0A0P0W906_ORYSJ,A0A0P0Y8J6_ORYSJ Os04g0319150 OSNPB_040319150,Os12g0247533 OSNPB_120247533 ENOG411EIN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0537200 protein (Fragment) A0A0P0XJR4 A0A0P0XJR4_ORYSJ Os08g0537200 OSNPB_080537200 ENOG411EIN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIN7 Q2V4N0,Q2V413,A8MRC8,Q8GXR4,A0A1P8B0X4 DF110_ARATH,DF107_ARATH,DF200_ARATH,DF103_ARATH,A0A1P8B0X4_ARATH Putative defensin-like protein 110,Defensin-like protein 107,Defensin-like protein 200,Defensin-like protein 103,Molecular chaperone Hsp40/DnaJ family protein 8997,9079,14466,10055,9338 Putative defensin-like protein 110,Defensin-like protein 107,Defensin-like protein 200,Defensin-like protein 103,Molecular chaperone Hsp40/DnaJ family protein extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023084;,locus:1009023221;,locus:504954899;,locus:1005716647; AT1G15757,AT2G40995,AT5G59105,AT2G20465 NA NA NA NA NA NA NA NA ENOG411E7Z8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin efflux Os09g0554650 protein A0A0N7KR88 A0A0N7KR88_ORYSJ Os09g0554650 OSNPB_090554650 ENOG411E7Z9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0564750 protein (Fragment) A0A0P0XIP1 A0A0P0XIP1_ORYSJ Os08g0564750 OSNPB_080564750 ENOG411E7Z2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Cancer susceptibility candidate 1 NA NA NA NA NA NA NA ENOG411E7Z3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) Os11g0643600 protein Q0IRE3 Q0IRE3_ORYSJ Os11g0643600 OSNPB_110643600 ENOG411E7Z0 O48719 O48719_ARATH Expressed protein (Transmembrane protein) (Uncharacterized protein At2g26520) 15438 Expressed protein (Transmembrane protein) (Uncharacterized protein At2g26520) integral component of membrane [GO:0016021] locus:2066205; AT2G26520 NA NA NA NA NA NA NA NA ENOG411E7Z1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0273900 protein (cDNA clone:002-175-A06, full insert sequence) Q6K7U0 Q6K7U0_ORYSJ Os02g0273900 OsJ_06219 OSNPB_020273900 P0413A11.15 ENOG411E7Z6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7Z7 Q8L9N1 Q8L9N1_ARATH Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At3g02120) (Uncharacterized protein At3g02120/F1C9_9) 14150 Hydroxyproline-rich glycoprotein family protein (Uncharacterized protein At3g02120) (Uncharacterized protein At3g02120/F1C9_9) locus:2078708; AT3G02120 NA NA NA NA NA NA NA NA ENOG411E7Z4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYND finger NA NA NA NA NA NA NA ENOG411E7Z5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7ZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0574600 protein) (cDNA clone:001-106-H06, full insert sequence) Q84MS9 Q84MS9_ORYSJ Os03g0574600 LOC_Os03g37810 Os03g0574600 OsJ_11512 OSJNBa0008D12.22 OSJNBa0029P07.14 OSNPB_030574600 ENOG411E7ZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E7ZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0543500 protein (Fragment) A0A0P0WCY3 A0A0P0WCY3_ORYSJ Os04g0543500 OSNPB_040543500 ENOG411E7ZI CSN6B Q8W1P0 CSN6B_ARATH COP9 signalosome complex subunit 6b (AtCSN6b) (Signalosome subunit 6b) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions, due to the redundancy with CSN6A. Csn6a and csn6b double mutants are lethal at the seedling stage. {ECO:0000269|PubMed:17307927}. In the dark and under all light conditions tested loss of function for both CSN6 proteins (double homozygous progeny) results in lethality at the seedling stage and in a photomorphogenic phenotype indistinguishable from the fusca-type phenotype of the null cop/det/fus mutants described for the other CSN subunits.,In the double homozygous progeny significant reduction of CSN1 CSN3 CSN4 CSN7 and CSN8. The only subunits not affected are CSN2 and CSN5.,In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,Mutation is lethal in the homozygous state.,Mutants display a mild partial photomorphogenic phenotype in the dark and in blue light characterized by shorter hypocotyls with respect to wildtype plants grown under the same conditions.,No detectable changes in the cellular pools of COP9 signalosome complex subunits.,The mutant do not display any obvious morphological defects in white light and after the seedling stage. Short hypocotyl in the dark and under blue light-X. Deng-2007 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. Essential for the structural integrity of the CSN holocomplex (PubMed:17307927). {ECO:0000269|PubMed:11337587, ECO:0000269|PubMed:17307927}. MISCELLANEOUS: Although strongly related to metalloprotease proteins, it lacks the JAMM motif that probably constitutes the catalytic center. Its function as protease is therefore unsure. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 35404 COP9 signalosome complex subunit 6b (AtCSN6b) (Signalosome subunit 6b) COP9 signalosome [GO:0008180]; cytoplasm [GO:0005737]; COP9 signalosome assembly [GO:0010387]; multicellular organism development [GO:0007275]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585] locus:2131493; AT4G26430 Inherit from KOG: cop9 signalosome complex subunit NA NA NA NA NA NA NA ENOG411E7ZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0578550 protein (Fragment) A0A0P0WDU2 A0A0P0WDU2_ORYSJ Os04g0578550 OSNPB_040578550 ENOG411E7ZM MSP2 Q1PDM1 Q1PDM1_ARATH Microspore-specific promoter 2 22008 Microspore-specific promoter 2 chloroplast [GO:0009507]; pollen development [GO:0009555] locus:505006676; AT5G46795 NA NA NA NA NA NA NA NA ENOG411E7ZB MUF9.9 Q9FKK1 Q9FKK1_ARATH Protein transport protein Sec61 subunit beta FUNCTION: Necessary for protein translocation in the endoplasmic reticulum. {ECO:0000256|PIRNR:PIRNR006398}. R-ATH-381038; Phagosome (04145),Protein export (03060),Vibrio cholerae infection (05110),Protein processing in endoplasmic reticulum (04141) 10865 Protein transport protein Sec61 subunit beta endoplasmic reticulum Sec complex [GO:0031205]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; Sec61 translocon complex [GO:0005784]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; posttranslational protein targeting to membrane, translocation [GO:0031204]; SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616] locus:2175108; AT5G60460 protein transport protein sec61 Protein transport protein Sec61 subunit beta Q2RBP5 Q2RBP5_ORYSJ Os11g0104050 LOC_Os11g01300 Os11g0103900 OSNPB_110104050 FUNCTION: Necessary for protein translocation in the endoplasmic reticulum. {ECO:0000256|PIRNR:PIRNR006398}. ENOG411E7ZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Myb-like DNA-binding domain containing protein, expressed (Os10g0444100 protein) (cDNA clone:J023105M22, full insert sequence),Os10g0443800 protein Q109M5,A0A0P0XUM9 Q109M5_ORYSJ,A0A0P0XUM9_ORYSJ LOC_Os10g30719 Os10g0444100 OSNPB_100444100,Os10g0443800 OSNPB_100443800 ENOG411E7ZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0180600 protein (Fragment) Q0DUL0 Q0DUL0_ORYSJ Os03g0180600 OSNPB_030180600 ENOG411E7ZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0329800 protein Q69UX9 Q69UX9_ORYSJ Os06g0329800 OJ1230_H04.15 OsJ_21193 OSNPB_060329800 ENOG411E7ZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7ZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E7ZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7ZX PSRP6 Q9FKP0,A0A1P8BCP6 PSRP6_ARATH,A0A1P8BCP6_ARATH 50S ribosomal protein 6, chloroplastic (CL25) (Plastid-specific 50S ribosomal protein 6) (PSRP-6),Plastid-specific 50S ribosomal protein 6 11037,13848 50S ribosomal protein 6, chloroplastic (CL25) (Plastid-specific 50S ribosomal protein 6) (PSRP-6),Plastid-specific 50S ribosomal protein 6 chloroplast [GO:0009507]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2170328; AT5G17870 50S ribosomal protein 6 Expressed protein (Os11g0550800 protein) (cDNA clone:001-104-C08, full insert sequence) (cDNA clone:J013062D04, full insert sequence) Q2R2R2 Q2R2R2_ORYSJ Os11g0550800 LOC_Os11g34940 Os11g0550800 OSNPB_110550800 ENOG411E7ZY F4I1W9 F4I1W9_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 18585 Plant invertase/pectin methylesterase inhibitor superfamily protein enzyme inhibitor activity [GO:0004857] locus:2020507; AT1G55770 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E7ZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L39 protein NA NA NA NA NA NA NA ENOG411E7ZP Q8H1N0 Q8H1N0_ARATH FK506-binding nuclear-like protein (Uncharacterized protein At2g33400/F4P9.17) 31133 FK506-binding nuclear-like protein (Uncharacterized protein At2g33400/F4P9.17) locus:2051159; AT2G33400 NA NA NA NA NA NA NA NA ENOG411E7ZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411E7ZW VUP1 Q9LSZ3,Q8GRY6 Q9LSZ3_ARATH,Q8GRY6_ARATH Transmembrane protein,Transmembrane protein (Uncharacterized protein At3g21710) FUNCTION: Involved in the regulation of xylem development and growth. May regulate secondary wall formation during vascular development by modulation of brassinosteroid, gibberellin and auxin hormone signaling pathways. {ECO:0000269|PubMed:24567189}. MISCELLANEOUS: Plants overexpressing VUP1 exhibit severe dwarfism with extreme short and round shaped organs, and display extreme longevity before senescence. {ECO:0000269|PubMed:24567189}. 23691,19744 Transmembrane protein,Transmembrane protein (Uncharacterized protein At3g21710) cytosol [GO:0005829]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; xylem development [GO:0010089],integral component of membrane [GO:0016021] locus:2093039; AT3G21710 NA NA NA NA NA NA NA NA ENOG411E7ZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0182500 protein) (cDNA clone:002-118-B11, full insert sequence) Q2QWU4 Q2QWU4_ORYSJ LOC_Os12g08200 Os12g0182500 OSNPB_120182500 ENOG411E7ZU Q8VZ44,A8MQS6 Q8VZ44_ARATH,A8MQS6_ARATH Cox19 family protein (CHCH motif) (Uncharacterized protein At1g02160),Cox19 family protein (CHCH motif) 8061,10243 Cox19 family protein (CHCH motif) (Uncharacterized protein At1g02160),Cox19 family protein (CHCH motif) locus:2204883; AT1G02160 Inherit from KOG: coiled-coil-helix-coiled-coil-helix domain containing 7 Os04g0665000 protein (Fragment) Q0J999 Q0J999_ORYSJ Os04g0665000 Os04g0665000 OSNPB_040665000 ENOG411DVDW VIP3 Q9SZQ5 VIP3_ARATH WD repeat-containing protein VIP3 (Protein BOUQUET-1) (boq-1) (Protein SKI8 homolog) (Protein VERNALIZATION INDEPENDENCE 3) (Protein ZWERGERL) (zwg) DISRUPTION PHENOTYPE: Early flowering, reduced plant size and defects in floral morphology in whorls 1-3, but fully fertile flowers (PubMed:12750345, PubMed:16716192). Growth defects due to extra shoot apical meristem (SAM) formation (PubMed:23134555). {ECO:0000269|PubMed:12750345, ECO:0000269|PubMed:16716192, ECO:0000269|PubMed:23134555}. Early flowering.,H3K4me3 and K3K36me2 modifications are redistributed within genes but the overall abundance of these modifications within chromatin is not changed. FUNCTION: Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3) (PubMed:20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressor and MADS box gene FLC (PubMed:12750345, PubMed:18725930). Required for histone H3 trimethylation on 'Lys-4' (H3K4me3) and histone dimethylation on 'Lys-36' (H3K36me2) at the FLC locus. Prevents trimethylation on 'Lys-27' (H3K27me3) at the same locus (PubMed:18725930). Not required for meiotic recombination or progression (PubMed:16716192). Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C) (PubMed:22511887). Required for proper progression of cell differentiation process (PubMed:23134555). {ECO:0000269|PubMed:12750345, ECO:0000269|PubMed:16716192, ECO:0000269|PubMed:18725930, ECO:0000269|PubMed:20363855, ECO:0000269|PubMed:22511887, ECO:0000269|PubMed:23134555}. R-ATH-429958; 34260 WD repeat-containing protein VIP3 (Protein BOUQUET-1) (boq-1) (Protein SKI8 homolog) (Protein VERNALIZATION INDEPENDENCE 3) (Protein ZWERGERL) (zwg) Cdc73/Paf1 complex [GO:0016593]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytosol [GO:0005829]; nucleus [GO:0005634]; flower development [GO:0009908]; histone H3-K36 methylation [GO:0010452]; histone H3-K4 methylation [GO:0051568]; negative regulation of flower development [GO:0009910]; posttranscriptional gene silencing [GO:0016441]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2123929; AT4G29830 WD repeat-containing protein Expressed protein (Os11g0660300 protein) Q2R037 Q2R037_ORYSJ LOC_Os11g43890 Os11g0660300 OSNPB_110660300 ENOG411E7QB AGAMOUS-like 91 Q9C836 Q9C836_ARATH AGAMOUS-like 91 (MADS-box family protein) (SRF-type transcription factor; 29224-29760) 20374 AGAMOUS-like 91 (MADS-box family protein) (SRF-type transcription factor; 29224-29760) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2103415; AT3G66656 agamous-like MADS-box protein AGL61-like NA NA NA NA NA NA NA ENOG411EEVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G8 domain NA NA NA NA NA NA NA ENOG411DVHW F4JF14 F4JF14_ARATH Transducin family protein / WD-40 repeat family protein 104853 Transducin family protein / WD-40 repeat family protein locus:2096489; AT3G42660 WD repeat and HMG-box DNA-binding protein Os09g0241100 protein (Fragment) A0A0P0XKM1 A0A0P0XKM1_ORYSJ Os09g0241100 OSNPB_090241100 ENOG411DVHX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Inorganic phosphate transporter 1-6 (OsPT6) (OsPht1;6) (H(+)/Pi cotransporter) (OsLPT1) (OsLPT6:1),Probable inorganic phosphate transporter 1-7 (OsPT7) (OsPht1;7) (H(+)/Pi cotransporter),Os04g0508751 protein (Fragment),Os01g0741300 protein (Fragment) Q8H6H0,Q8H6G9,A0A0P0WCA4,A0A0P0V7Z4 PHT16_ORYSJ,PHT17_ORYSJ,A0A0P0WCA4_ORYSJ,A0A0P0V7Z4_ORYSJ PHT1-6 PT6 Os08g0564000 LOC_Os08g45000 P0543D10.41 P0705A05.110,PHT1-7 PT7 Os03g0136400 LOC_Os03g04360 OsJ_008981,Os04g0508751 OSNPB_040508751,Os01g0741300 OSNPB_010741300 FUNCTION: High-affinity transporter for external inorganic phosphate (Pi). Probably involved in Pi uptake, translocation and internal transport throughout the plant. {ECO:0000269|PubMed:18980647}.,FUNCTION: High-affinity transporter for external inorganic phosphate. {ECO:0000250}. MISCELLANEOUS: Although related to the sugar transporter family, it does not transport sugars. ENOG411DVHN PER17 Q9SJZ2 PER17_ARATH Peroxidase 17 (Atperox P17) (EC 1.11.1.7) (ATP25a) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G22420-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 36670 Peroxidase 17 (Atperox P17) (EC 1.11.1.7) (ATP25a) cytosol [GO:0005829]; extracellular region [GO:0005576]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2041188; AT2G22420 peroxidase Peroxidase (EC 1.11.1.7) Q6K4J4 Q6K4J4_ORYSJ prx122 Os09g0471100 OJ1118_B06.10 OSNPB_090471100 ENOG411DVHJ Q9M872 Q9M872_ARATH At3g02700 (F16B3.33 protein) (NC domain-containing protein-like protein) (Uncharacterized protein At3g02700/F16B3_33) 27065 At3g02700 (F16B3.33 protein) (NC domain-containing protein-like protein) (Uncharacterized protein At3g02700/F16B3_33) locus:2076964; AT3G02700 NC domain-containing protein Os05g0310600 protein (cDNA, clone: J043001F02, full insert sequence) Q0DJA1 Q0DJA1_ORYSJ Os05g0310600 Os05g0310600 OsJ_18000 OSNPB_050310600 ENOG411DVHK RRP6L3 A9LLI8,F4ITQ7 RP6L3_ARATH,F4ITQ7_ARATH Protein RRP6-like 3 (AtRRP6L3),Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 101390,99087 Protein RRP6-like 3 (AtRRP6L3),Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]; transferase activity [GO:0016740] locus:504955936; AT2G32415 HRDC domain Os07g0513100 protein A0A0N7KNI7 A0A0N7KNI7_ORYSJ Os07g0513100 OSNPB_070513100 ENOG411EEVS Q1G3W9,B3H5E7,B3H676,F4IDB9,B3H5X6 Q1G3W9_ARATH,B3H5E7_ARATH,B3H676_ARATH,F4IDB9_ARATH,B3H5X6_ARATH Chaperone DnaJ-domain superfamily protein 21257,21386,21533,18251,23298 Chaperone DnaJ-domain superfamily protein integral component of membrane [GO:0016021] locus:1009023133; AT1G72416 DnaJ domain NA NA NA NA NA NA NA ENOG411DVHH F3L24.12 Q9SR38,A0A178VFU5,F4IZV9 Q9SR38_ARATH,A0A178VFU5_ARATH,F4IZV9_ARATH F3L24.12 protein (Nuclear transport factor 2 (NTF2) family protein) (Uncharacterized protein At3g09250),Nuclear transport factor 2 (NTF2) family protein 27508,26077,28261 F3L24.12 protein (Nuclear transport factor 2 (NTF2) family protein) (Uncharacterized protein At3g09250),Nuclear transport factor 2 (NTF2) family protein chloroplast [GO:0009507] locus:2083509; AT3G09250 UvrB/uvrC motif Os02g0788500 protein (cDNA clone:006-303-H04, full insert sequence) (cDNA clone:006-307-F07, full insert sequence),Os01g0753200 protein (Fragment) Q0DWX6,A0A0P0V8D0 Q0DWX6_ORYSJ,A0A0P0V8D0_ORYSJ Os02g0788500 Os02g0788500 OsJ_08664 OSNPB_020788500,Os01g0753200 OSNPB_010753200 ENOG411E33F Q6NLZ8,Q8VYH4,A0A1I9LSN4 Q6NLZ8_ARATH,Q8VYH4_ARATH,A0A1I9LSN4_ARATH At3g01170 (Ribosomal protein L34e superfamily protein) (Uncharacterized protein At3g01170),AT5g15260/F8M21_150 (Ribosomal protein L34e superfamily protein) (Uncharacterized protein At5g15260),Ribosomal protein L34e superfamily protein 23851,25858,16364 At3g01170 (Ribosomal protein L34e superfamily protein) (Uncharacterized protein At3g01170),AT5g15260/F8M21_150 (Ribosomal protein L34e superfamily protein) (Uncharacterized protein At5g15260),Ribosomal protein L34e superfamily protein cytosolic large ribosomal subunit [GO:0022625]; integral component of membrane [GO:0016021]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosome biogenesis [GO:0042254]; translation [GO:0006412],integral component of membrane [GO:0016021]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2102112;,locus:2150941; AT3G01170,AT5G15260 Inherit from euNOG: structural constituent of ribosome Os05g0488500 protein (cDNA clone:002-139-G04, full insert sequence),Os01g0815100 protein Q6AVN3,A0A0P0V9I8 Q6AVN3_ORYSJ,A0A0P0V9I8_ORYSJ Os05g0488500 Os05g0488500 OJ1119_H02.10 OSNPB_050488500,Os01g0815100 OSNPB_010815100 ENOG411E33A MEE14 Q9XIM0 MEE14_ARATH CCG-binding protein 1 (AtCBP1) (Protein MATERNAL EFFECT EMBRYO ARREST 14) DISRUPTION PHENOTYPE: Disrupted function of the female gametophyte. Defective in micropylar pollen tube guidance leading to zygotic lethality. {ECO:0000305|PubMed:26462908}. FUNCTION: Required for the development of the one-cell zygote and endosperm in embryos (PubMed:15634699). Required for micropylar pollen tube guidance, but has no effect on ovule development and gametophytic cell fate specification. May connect transcription factors and the Pol II machinery to regulate pollen tube attraction, via its interactions with AGAMOUS-like (AGL) transcription factors, MEE14/CCG and the Mediator complex (PubMed:26462908). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26462908}. 23154 CCG-binding protein 1 (AtCBP1) (Protein MATERNAL EFFECT EMBRYO ARREST 14) chloroplast [GO:0009507]; cytosol [GO:0005829]; nucleus [GO:0005634]; mediator complex binding [GO:0036033]; defense response to fungus [GO:0050832]; embryo development ending in seed dormancy [GO:0009793]; pollen tube guidance [GO:0010183] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. Expressed in the central cell of mature ovules. {ECO:0000269|PubMed:26462908}. locus:2044556; AT2G15890 NA Os03g0765500 protein,Expressed protein (Os03g0765400 protein) Q7Y0B8,Q7Y0E0 Q7Y0B8_ORYSJ,Q7Y0E0_ORYSJ OSJNBa0079B15.19 Os03g0765500 LOC_Os03g55680 OsJ_12707 OSNPB_030765500,OSJNBa0079B15.20 LOC_Os03g55670 Os03g0765400 OsJ_12706 OSNPB_030765400 ENOG411E33M HVA22F Q682H0 HA22F_ARATH HVA22-like protein f (AtHVA22f) 18503 HVA22-like protein f (AtHVA22f) integral component of membrane [GO:0016021] locus:2052339; AT2G42820 HVA22-like protein HVA22-like protein A0A0P0V7P7 A0A0P0V7P7_ORYSJ Os01g0728150 OSNPB_010728150 ENOG411E33N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipase C NA NA NA NA NA NA NA ENOG411E33I UP3,DABB1 Q9SIP1,Q9SYD8 UP3_ARATH,DABB1_ARATH Stress-response A/B barrel domain-containing protein UP3 (Unknown protein 3),Stress-response A/B barrel domain-containing protein DABB1 (Dimeric A/B barrel domain-containing protein 1) (AtDabb1) FUNCTION: Involved in stress response. {ECO:0000305}.,FUNCTION: Involved in defense against fungal pathogens. Possesses antifungal activity against diverse pathogenic fungi. {ECO:0000269|PubMed:18674644}. 28865,23652 Stress-response A/B barrel domain-containing protein UP3 (Unknown protein 3),Stress-response A/B barrel domain-containing protein DABB1 (Dimeric A/B barrel domain-containing protein 1) (AtDabb1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; peroxisome [GO:0005777],cytosol [GO:0005829]; defense response to fungus, incompatible interaction [GO:0009817]; response to fungus [GO:0009620]; response to jasmonic acid [GO:0009753] locus:2065949;,locus:2008261; AT2G31670,AT1G51360 stress responsive A B Barrel domain containing protein expressed Os07g0609000 protein Q6YTX5,A0A0P0X8Q0 Q6YTX5_ORYSJ,A0A0P0X8Q0_ORYSJ Os07g0609000 OsJ_25078 OSJNBb0018L13.12 OSNPB_070609000,Os07g0609000 OSNPB_070609000 ENOG411E33H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0567600 protein),Os12g0458900 protein (Fragment) Q7XC01,Q0ING2 Q7XC01_ORYSJ,Q0ING2_ORYSJ OSJNBa0057L21.14 LOC_Os10g41800 Os10g0567600 OSNPB_100567600,Os12g0458900 Os12g0458900 OSNPB_120458900 ENOG411E33K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger Os02g0823900 protein (Putative finger protein EPF1) Q6K9W9 Q6K9W9_ORYSJ Os02g0823900 OJ1063_D06.5 OJ1136_C04.13 OSNPB_020823900 ENOG411E33J Q9M123,A0A1P8B756,F4JG25 Q9M123_ARATH,A0A1P8B756_ARATH,F4JG25_ARATH DNA-directed RNA polymerase III subunit (Uncharacterized protein At4g01590),DNA-directed RNA polymerase III subunit 23135,20486,23070 DNA-directed RNA polymerase III subunit (Uncharacterized protein At4g01590),DNA-directed RNA polymerase III subunit DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; transcription from RNA polymerase III promoter [GO:0006383],DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2133372; AT4G01590 DNA-directed RNA polymerase III subunit Rpc31 Os07g0611600 protein (cDNA clone:J033096O12, full insert sequence),Os07g0611600 protein (Fragment) Q7XB88,A0A0P0X969 Q7XB88_ORYSJ,A0A0P0X969_ORYSJ OJ1003_H02.115 Os07g0611600 OsJ_25099 OSNPB_070611600,Os07g0611600 OSNPB_070611600 ENOG411E33V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0637800 protein (Fragment) A0A0P0V5Q1 A0A0P0V5Q1_ORYSJ Os01g0637800 OSNPB_010637800 ENOG411E33S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein Os02g0181400 protein,Os06g0576600 protein (Fragment),Os11g0599400 protein,Os10g0341101 protein (Fragment) A0A0P0VFR2,A0A0P0WY02,A0A0P0Y429,A0A0N7KRM2 A0A0P0VFR2_ORYSJ,A0A0P0WY02_ORYSJ,A0A0P0Y429_ORYSJ,A0A0N7KRM2_ORYSJ Os02g0181400 OSNPB_020181400,Os06g0576600 OSNPB_060576600,Os11g0599400 OSNPB_110599400,Os10g0341101 OSNPB_100341101 ENOG411E33Y PDV2 Q9XII1 PDV2_ARATH Plastid division protein PDV2 (Protein PLASTID DIVISION2) DISRUPTION PHENOTYPE: Reduced number of constricted and large chloroplasts. {ECO:0000269|PubMed:16998069, ECO:0000269|PubMed:18812496}. FUNCTION: Component of the plastid division machinery. Required to mediate the recruitment of ARC5 at the midplastid constriction site in the cytoplasm. Relays plastid division site position between stroma and outer surface via interactions with the cytoplasmic ARC5 and the inner membrane ARC6 that recruits stromal FtsZ ring. {ECO:0000269|PubMed:16998069, ECO:0000269|PubMed:18812496}. 33641 Plastid division protein PDV2 (Protein PLASTID DIVISION2) integral component of chloroplast outer membrane [GO:0031359]; plastid [GO:0009536] locus:2052996; AT2G16070 plastid division protein PDV2-like Os07g0123300 protein Q6Z4R9 Q6Z4R9_ORYSJ Os07g0123300 OSJNBa0057M23.134 OSNPB_070123300 ENOG411E33Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor Os05g0448675 protein A0A0P0WN85 A0A0P0WN85_ORYSJ Os05g0448675 OSNPB_050448675 ENOG411E335 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Enoyl-CoA hydratase/isomerase family Carnitine racemase-like (Os01g0205600 protein) (cDNA clone:J013121K01, full insert sequence) Q9LEA0 Q9LEA0_ORYSJ Os01g0205600 OSNPB_010205600 P0451C06.25 ENOG411E334 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E337 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0468900 protein (cDNA clone:J023043E08, full insert sequence) Q6K4A9 Q6K4A9_ORYSJ Os09g0468900 Os09g0468900 OJ1595_D08.7 OsJ_29698 OSNPB_090468900 P0676H02.25 ENOG411E336 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411E331 Q9LQV4,A0A1P8AMX8,F4HVK3,A0A1P8AN00 Q9LQV4_ARATH,A0A1P8AMX8_ARATH,F4HVK3_ARATH,A0A1P8AN00_ARATH F10B6.17 (Putative PhD-finger protein) (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein 48558,30581,35543,28283 F10B6.17 (Putative PhD-finger protein) (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; metal ion binding [GO:0046872]; telomeric loop formation [GO:0031627],metal ion binding [GO:0046872] locus:2006792;,locus:2200201; AT1G14770,AT1G68030 PHD NA NA NA NA NA NA NA ENOG411E330 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: deaminase NA NA NA NA NA NA NA ENOG411E333 ARR5 Q9SB04 ARR5_ARATH Two-component response regulator ARR5 (Response reactor 2) Small rosette leaves under short days; Short hypocotyl under red light-J. Kieber-2004 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:14973166, ECO:0000269|PubMed:9482949}. 20879 Two-component response regulator ARR5 (Response reactor 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; circadian rhythm [GO:0007623]; cytokinin-activated signaling pathway [GO:0009736]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in roots and shoot apical meristems. {ECO:0000269|PubMed:11115887, ECO:0000269|PubMed:9482949, ECO:0000269|PubMed:9607306, ECO:0000269|PubMed:9634588}. locus:2097870; AT3G48100 response regulator NA NA NA NA NA NA NA ENOG411E332 Q8GXK1,A0A1P8B893,B3H5F4 Q8GXK1_ARATH,A0A1P8B893_ARATH,B3H5F4_ARATH At4g33625 (Vacuole protein),Vacuole protein 22614,19250,22484 At4g33625 (Vacuole protein),Vacuole protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773],integral component of membrane [GO:0016021] locus:1005716273; AT4G33625 COPI associated protein Os07g0118300 protein A0A0N7KMU9 A0A0N7KMU9_ORYSJ Os07g0118300 OSNPB_070118300 ENOG411E339 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E338 MED7B,MED7A Q9LZD7,Q9LYW3,A0A1P8BCE1 MED7B_ARATH,MED7A_ARATH,A0A1P8BCE1_ARATH Mediator of RNA polymerase II transcription subunit 7b,Mediator of RNA polymerase II transcription subunit 7a,Mediator of RNA polymerase II transcription subunit 7 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. {ECO:0000256|RuleBase:RU364060}. 19299,19425,20524 Mediator of RNA polymerase II transcription subunit 7b,Mediator of RNA polymerase II transcription subunit 7a,Mediator of RNA polymerase II transcription subunit 7 core mediator complex [GO:0070847]; mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription, DNA-templated [GO:0006351],mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription, DNA-templated [GO:0006351] locus:2831839;,locus:2143523; AT5G03500,AT5G03220 Mediator of RNA polymerase II transcription subunit Mediator of RNA polymerase II transcription subunit 7 Q7XM27 Q7XM27_ORYSJ Os04g0661800 OsJ_16504 OSJNBa0084K01.4 OSNPB_040661800 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. {ECO:0000256|RuleBase:RU364060}. ENOG411EK39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EK35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF1-related protein kinase regulatory subunit gamma-1-like NA NA NA NA NA NA NA ENOG411EK34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1162) Os12g0594300 protein,Os12g0594200 protein A0A0P0YBU6,A0A0P0YBS9 A0A0P0YBU6_ORYSJ,A0A0P0YBS9_ORYSJ Os12g0594300 OSNPB_120594300,Os12g0594200 OSNPB_120594200 ENOG411EK37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sucrose nonfermenting 4-like protein-like NA NA NA NA NA NA NA ENOG411EK31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF946) Os10g0565401 protein (Fragment) A0A0P0XXB2 A0A0P0XXB2_ORYSJ Os10g0565401 OSNPB_100565401 ENOG411EK30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1162) Os10g0565300 protein (Fragment) A0A0P0XXC8 A0A0P0XXC8_ORYSJ Os10g0565300 OSNPB_100565300 ENOG411EK3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Symplekin tight junction protein C terminal Os01g0694300 protein (Fragment) Q0JK62 Q0JK62_ORYSJ Os01g0694300 Os01g0694300 OSNPB_010694300 ENOG411EK3X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase Purple acid phosphatase (EC 3.1.3.2) Q7XH73,Q10PD0 Q7XH73_ORYSJ,Q10PD0_ORYSJ OSJNBa0023I19.10 LOC_Os10g02750 Os10g0116800 OsJ_30536 OSNPB_100116800,LOC_Os03g13540 Os03g0238600 OsJ_10077 OSNPB_030238600 ENOG411EK3Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Symplekin tight junction protein C terminal NA NA NA NA NA NA NA ENOG411EK3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger ZZ type NA NA NA NA NA NA NA ENOG411EK3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF23 NA NA NA NA NA NA NA ENOG411EK3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EK3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Os01g0616300 protein (Fragment),'unknow protein, contains tetratricopeptide (TPR) domain (Os05g0587300 protein),Os02g0434932 protein,Os01g0616333 protein Q0JL88,Q6L5C2,A0A0P0VIG8,A0A0P0V586 Q0JL88_ORYSJ,Q6L5C2_ORYSJ,A0A0P0VIG8_ORYSJ,A0A0P0V586_ORYSJ Os01g0616300 Os01g0616300 OSNPB_010616300,Os05g0587300 Os05g0587300 OJ1007_H05.8 OSNPB_050587300,Os02g0434932 OSNPB_020434932,Os01g0616333 OSNPB_010616333 ENOG411EK3D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR repeat-containing thioredoxin TTL1-like NA NA NA NA NA NA NA ENOG411EK3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EK3F TTL1 Q9MAH1 TTL1_ARATH TPR repeat-containing thioredoxin TTL1 (Tetratricopeptide repeat thioredoxin-like 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings show reduced root elongation under salt stress and increased germination rates under osmotic stress and exogenous ABA treatments. {ECO:0000269|PubMed:16998088, ECO:0000269|PubMed:22232384}. FUNCTION: Involved in responses to osmotic stress and abscisic acid (ABA). May act as a positive regulator of ABA signaling during germination and seedling development under stress. {ECO:0000269|PubMed:16998088, ECO:0000269|PubMed:22232384}. 76115 TPR repeat-containing thioredoxin TTL1 (Tetratricopeptide repeat thioredoxin-like 1) cell [GO:0005623]; abscisic acid-activated signaling pathway [GO:0009738]; cell redox homeostasis [GO:0045454]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in the root elongation zone, stele, root cap, embryo vascular system, leaf axilar buds, silique abscission zone and guard cells. {ECO:0000269|PubMed:16998088, ECO:0000269|PubMed:22232384}. locus:2009590; AT1G53300 TPR repeat-containing thioredoxin NA NA NA NA NA NA NA ENOG411EK3A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os01g0218200 protein (Tetratricopeptide repeat protein-like) Q5QNE5 Q5QNE5_ORYSJ Os01g0218200 Os01g0218200 OSNPB_010218200 P0489G09.8 P0665D10.23 ENOG411EK3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR Os02g0784100 protein (Fragment),Os02g0782800 protein (Fragment) A0A0P0VQF0,A0A0P0VQB6 A0A0P0VQF0_ORYSJ,A0A0P0VQB6_ORYSJ Os02g0784100 OSNPB_020784100,Os02g0782800 OSNPB_020782800 ENOG411DVKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain CLV1 receptor kinase-like (Os09g0326100 protein) (cDNA clone:J023022K03, full insert sequence) Q6K3W2 Q6K3W2_ORYSJ Os09g0326100 OsJ_28883 OSNPB_090326100 P0692F07.27 ENOG411DVKQ AT4G17430.1 Q1JPM5 Q1JPM5_ARATH At4g17430 (O-fucosyltransferase family protein) 56835 At4g17430 (O-fucosyltransferase family protein) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2129026; AT4G17430 NA Os10g0561200 protein (Fragment) A0A0P0XXS7 A0A0P0XXS7_ORYSJ Os10g0561200 OSNPB_100561200 ENOG411DVKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os05g0430900 protein (Putative oligopeptide transporter) (Putative peptide transporter) (cDNA clone:J013145B01, full insert sequence) Q6I5V4 Q6I5V4_ORYSJ Os05g0430900 Os05g0430900 OJ1378_A04.4 OSJNBb0048I21.15 OSNPB_050430900 ENOG411DVKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin-binding protein MPCBP Calmodulin-binding protein MPCBP, putative, expressed (Os11g0689300 protein) (Putative calmodulin-binding protein),Os11g0689300 protein (Fragment) Q2QZE9,A0A0P0Y649 Q2QZE9_ORYSJ,A0A0P0Y649_ORYSJ OSJNBb0018L01.2 LOC_Os11g46230 Os11g0689300 OSNPB_110689300,Os11g0689300 OSNPB_110689300 ENOG411DVKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Natural resistance-associated macrophage protein Metal transporter NRAT1 (Protein NRAMP ALUMINUM TRANSPORTER 1) Q6ZG85 NRAT1_ORYSJ NRAT1 Os02g0131800 LOC_Os02g03900 OJ1007_D04.24 OsJ_05257 DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but after exposure to Al, decreased levels of Al in root-cell sap, increased Al content in the cell wall and increased inhibition of root growth. {ECO:0000269|PubMed:20937890}. FUNCTION: Metal transporter that transports the trivalent cation aluminum (Al(3+)), but does not seem to transport divalent cations such as iron (Fe(2+)), manganese (Mg(2+)) or Cadmium (Cd(2+)). Involved in Al tolerance by taking up Al in root cells, where it is detoxified by chelation with organic acid anions and sequestration into the vacuoles. {ECO:0000269|PubMed:20937890}. ENOG411DVKY MED8 Q4V3C1 MED8_ARATH Mediator of RNA polymerase II transcription subunit 8 (Protein SETH 10) DISRUPTION PHENOTYPE: Increased number of leaves and shorter petioles under vegetative conditions. Late-flowering phenotype when grown under both long-day and short-day conditions. Increased sensitivity to necrotrophic pathogens. {ECO:0000269|PubMed:19671879}. FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Regulator of both plant defense and flowering time. Involved in pollen tube growth. {ECO:0000269|PubMed:15342534, ECO:0000269|PubMed:19671879}. MISCELLANEOUS: Named seth after the brother and murderer of the Egyptian fertility god Osiris. 58157 Mediator of RNA polymerase II transcription subunit 8 (Protein SETH 10) mediator complex [GO:0016592]; defense response to fungus [GO:0050832]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2056770; AT2G03070 NA Os03g0423800 protein A0A0P0VYY6 A0A0P0VYY6_ORYSJ Os03g0423800 OSNPB_030423800 ENOG411DVKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XRN 5'-3' exonuclease N-terminus 5'-3' exoribonuclease (EC 3.1.13.-),Os02g0481900 protein Q6K2K4,A0A0P0VJ19 Q6K2K4_ORYSJ,A0A0P0VJ19_ORYSJ Os02g0481900 OSJNBa0091C16.23-1 OSNPB_020481900,Os02g0481900 OSNPB_020481900 FUNCTION: Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. {ECO:0000256|PIRNR:PIRNR037239}. ENOG411DVKG F4IE61,F4IE60 F4IE61_ARATH,F4IE60_ARATH DNA binding protein 131191,131744 DNA binding protein nucleus [GO:0005634] locus:2028726; AT1G26330 NA Os09g0101800 protein Q69K21 Q69K21_ORYSJ Os09g0101800 Os09g0101800 OSJNBa0066B16.37 OSNPB_090101800 ENOG411DVKF TGA10 E3VNM4,A8MR34 TGA10_ARATH,A8MR34_ARATH Transcription factor TGA10 (Protein TGACG (TGA) motif-binding protein 10) (bZIP transcription factor 65) (AtbZIP65),BZIP transcription factor family protein DISRUPTION PHENOTYPE: In the double mutant tga9 tga10, reduced male fertility due to defects in male gametogenesis, with early steps in anther development blocked in adaxial lobes and later steps affected in abaxial lobes. Microspore development in abaxial anther lobes leads to the production of inviable pollen grains contained within nondehiscent anthers. In addition, multiple defects in the anther dehiscence program are observed, including abnormal stability and lignification of the middle layer and defects in septum and stomium function. Reduced SPL levels in anthers (PubMed:20805327). Increased sensitivity to flg22 treatment associated with a lack of chloroplastic H(2)O(2)-responsive genes; this phenotype is enhanced in the double mutant tga9 tga10 (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. FUNCTION: Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. 51167,46668 Transcription factor TGA10 (Protein TGACG (TGA) motif-binding protein 10) (bZIP transcription factor 65) (AtbZIP65),BZIP transcription factor family protein nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; hydrogen peroxide mediated signaling pathway [GO:0071588]; response to molecule of bacterial origin [GO:0002237]; transcription, DNA-templated [GO:0006351],sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}. TISSUE SPECIFICITY: Expressed at low levels in inflorescence apex and flowers. {ECO:0000269|PubMed:20805327}. locus:1005716824; AT5G06839 Transcription factor Os09g0489500 protein,Os09g0489500 protein (cDNA clone:J033121H05, full insert sequence) Q0J0P4,B7EU89 Q0J0P4_ORYSJ,B7EU89_ORYSJ Os09g0489500 Os09g0489500 OSNPB_090489500,Os09g0489500 OsJ_29832 OSNPB_090489500 ENOG411DVKE KCS4 Q9LN49 KCS4_ARATH 3-ketoacyl-CoA synthase 4 (KCS-4) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 4) (VLCFA condensing enzyme 4) PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT1G19440-MONOMER; 2.3.1.199 57842 3-ketoacyl-CoA synthase 4 (KCS-4) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 4) (VLCFA condensing enzyme 4) integral component of membrane [GO:0016021]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed at low levels in siliques, flowers, leaves and stems. {ECO:0000269|PubMed:18465198}. locus:2016397; AT1G19440 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q688V9 Q688V9_ORYSJ Os05g0568000 OJ1781_H11.18 OsJ_19584 OSNPB_050568000 ENOG411DVKD TBL12 Q9FGE9,A0A1P8BA20 TBL12_ARATH,A0A1P8BA20_ARATH Protein trichome birefringence-like 12,Trichome birefringence-like protein (DUF828) FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 47142,36743 Protein trichome birefringence-like 12,Trichome birefringence-like protein (DUF828) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2179386; AT5G64470 Pfam:DUF231 Leaf senescence related protein-like (Os02g0117900 protein) (cDNA clone:J023007M17, full insert sequence) Q6ZGL3 Q6ZGL3_ORYSJ Os02g0117900 Os02g0117900 OJ1217_F02.2 OJ1442_E05.33 OSNPB_020117900 ENOG411DVKJ DRM3 Q8H1E8,A0A1I9LSG4 DRM3_ARATH,A0A1I9LSG4_ARATH Probable inactive DNA (cytosine-5)-methyltransferase DRM3 (Protein DOMAINS REARRANGED METHYLTRANSFERASE 3),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein FUNCTION: Catalytically inactive DNA methyltransferase that acts as regulatory factor for DRM2-mediated DNA methylation. Required for maintenance of non-CpG DNA methylation. Required for normal establishment and maintenance of RNA-directed DNA methylation (RdDM) and accumulation of specific repeat-associated small interfering RNAs (siRNAs) (PubMed:21060858, PubMed:25316414, PubMed:25561521). Required for nucleolus organizer region (NOR) nuclear organization during interphase (PubMed:25316414). Acts downstream of the production of siRNAs. May promote RNA polymerase V (Pol V) transcriptional elongation or assist in the stabilization of Pol V transcripts (PubMed:25561521). {ECO:0000269|PubMed:21060858, ECO:0000269|PubMed:25316414, ECO:0000269|PubMed:25561521}. 79731,66519 Probable inactive DNA (cytosine-5)-methyltransferase DRM3 (Protein DOMAINS REARRANGED METHYLTRANSFERASE 3),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; methyltransferase activity [GO:0008168]; DNA methylation [GO:0006306],methyltransferase activity [GO:0008168]; DNA methylation [GO:0006306] locus:2089075; AT3G17310 DNA (cytosine-5-)-methyltransferase Probable inactive DNA (cytosine-5)-methyltransferase DRM3 (Protein DOMAINS REARRANGED METHYLASE 3) Q6AUQ7 DRM3_ORYSJ DRM3 Os05g0133900 LOC_Os05g04330 OSJNBa0077L08.12 FUNCTION: Involved in de novo DNA methylation. Involved in RNA-directed DNA methylation (RdDM). {ECO:0000250|UniProtKB:Q10SU5}. ENOG411DVKI NAC078,NAC053 Q84K00,Q949N0,A0A1I9LN95 NAC78_ARATH,NAC53_ARATH,A0A1I9LN95_ARATH NAC domain-containing protein 78 (ANAC078) (Protein NTM1-like 11),NAC domain-containing protein 53 (ANAC053) (Protein ANTHER INDEHISCENCE FACTOR) (Protein NTM1-like 4),NAC domain containing protein 53 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19887540}.,DISRUPTION PHENOTYPE: Delayed leaf senescence and enhanced drought resistance (PubMed:22313226). Enhanced heat resistance (PubMed:25219309). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:25219309}. FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.,FUNCTION: Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:24323506, ECO:0000269|PubMed:25219309, ECO:0000269|Ref.6}. 63511,62356,46492 NAC domain-containing protein 78 (ANAC078) (Protein NTM1-like 11),NAC domain-containing protein 53 (ANAC053) (Protein ANTHER INDEHISCENCE FACTOR) (Protein NTM1-like 4),NAC domain containing protein 53 cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of flavonoid biosynthetic process [GO:0009962]; response to high light intensity [GO:0009644]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; drought recovery [GO:0009819]; leaf senescence [GO:0010150]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of reactive oxygen species metabolic process [GO:2000377]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Expressed in the anthers and the upper parts of the stamen filaments after stage 7 to 9 of flower budding. In stage 10 flower buds, expressed in the anthers and pollen grains. Weakly expressed in mature flowers at stage 12. {ECO:0000269|PubMed:24323506}. TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex and stems. {ECO:0000269|PubMed:17158162}. locus:2184342;,locus:2075815; AT5G04410,AT3G10500 (NAC) domain-containing protein NAC transcription factor (Os08g0562200 protein) (Putative NAC2 protein) (cDNA clone:J013057D07, full insert sequence) (cDNA clone:J023008J18, full insert sequence),Os02g0822400 protein (Putative NAC2) (cDNA clone:J033086I18, full insert sequence),Os08g0562200 protein (Putative NAC2 protein) (cDNA clone:J023030H12, full insert sequence),Os02g0822400 protein Q6YYW2,Q6K6Z3,Q6YYW1,A0A0P0VRH4 Q6YYW2_ORYSJ,Q6K6Z3_ORYSJ,Q6YYW1_ORYSJ,A0A0P0VRH4_ORYSJ P0604E01.48-1 NAC40 P0543D10.8-1 Os08g0562200 OsJ_28294 OSNPB_080562200,Os02g0822400 Os02g0822400 OJ1119_A01.21 OsJ_08923 OSNPB_020822400 P0474F11.36,P0604E01.48-2 Os08g0562200 P0543D10.8-2 OSNPB_080562200,Os02g0822400 OSNPB_020822400 ENOG411DVKH Q9SZ10 PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680, mitochondrial 59364 Pentatricopeptide repeat-containing protein At4g26680, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA 5'-end processing [GO:0090617]; RNA modification [GO:0009451] locus:2116372; AT4G26680 Pentatricopeptide repeat-containing protein Os10g0363500 protein (Pentatricopeptide, putative, expressed) Q7G3D2 Q7G3D2_ORYSJ LOC_Os10g21920 Os10g0363500 OSNPB_100363500 ENOG411DVKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os03g0254000 protein) (cDNA, clone: J090087F12, full insert sequence) Q10NZ0 Q10NZ0_ORYSJ Os03g0254000 LOC_Os03g14900 OSNPB_030254000 ENOG411DVKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF296) Os04g0683900 protein (cDNA clone:001-035-A09, full insert sequence) (cDNA clone:J013091P17, full insert sequence) Q0J8W7 Q0J8W7_ORYSJ Os04g0683900 Os04g0683900 OSNPB_040683900 ENOG411DVK3 O04487,Q9FVT2,C0Z2L8 EF1G1_ARATH,EF1G2_ARATH,C0Z2L8_ARATH Probable elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma 1),Probable elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2),AT1G09640 protein (Translation elongation factor EF1B, gamma chain) FUNCTION: Probably plays a role in anchoring the complex to other cellular components. {ECO:0000250}. 46661,46400,29832 Probable elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma 1),Probable elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2),AT1G09640 protein (Translation elongation factor EF1B, gamma chain) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; glutathione transferase activity [GO:0004364]; translation elongation factor activity [GO:0003746]; glutathione metabolic process [GO:0006749],cell wall [GO:0005618]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; copper ion binding [GO:0005507]; glutathione transferase activity [GO:0004364]; translation elongation factor activity [GO:0003746]; glutathione metabolic process [GO:0006749]; response to cadmium ion [GO:0046686]; response to zinc ion [GO:0010043],translation elongation factor activity [GO:0003746] locus:2024311;,locus:2206535; AT1G09640,AT1G57720 Elongation factor Elongation factor 1-gamma 3 (EF-1-gamma 3) (eEF-1B gamma 3),Elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma 1),Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2),Os02g0220600 protein (Fragment) Q5Z627,Q9ZRI7,Q6YW46,A0A0P0VGJ4 EF1G3_ORYSJ,EF1G1_ORYSJ,EF1G2_ORYSJ,A0A0P0VGJ4_ORYSJ Os06g0571400 LOC_Os06g37440 OSJNBa0006A22.2 P0610D01.10,Os02g0220600 LOC_Os02g12800 B1131G07.12,Os02g0220500 LOC_Os02g12800 B1131G07.11,Os02g0220600 OSNPB_020220600 FUNCTION: Probably plays a role in anchoring the complex to other cellular components. {ECO:0000250}.,FUNCTION: Probably plays a role in anchoring the complex to other cellular components. ENOG411DVK2 C0Z2U8,Q949N7 C0Z2U8_ARATH,Q949N7_ARATH AT3G26890 protein (Meiosis chromosome segregation family protein),AT3G26890 protein (Meiosis chromosome segregation family protein) (Uncharacterized protein At3g26890) 70466,70594 AT3G26890 protein (Meiosis chromosome segregation family protein),AT3G26890 protein (Meiosis chromosome segregation family protein) (Uncharacterized protein At3g26890) locus:2088459; AT3G26890 Inherit from KOG: family with sequence similarity 214 member Os08g0536100 protein (Fragment),Os09g0509400 protein (Fragment) A0A0P0XIG8,A0A0P0XIT0,A0A0P0XPP3,A0A0P0XQ52,A0A0P0XIV1,A0A0P0XI88 A0A0P0XIG8_ORYSJ,A0A0P0XIT0_ORYSJ,A0A0P0XPP3_ORYSJ,A0A0P0XQ52_ORYSJ,A0A0P0XIV1_ORYSJ,A0A0P0XI88_ORYSJ Os08g0536100 OSNPB_080536100,Os09g0509400 OSNPB_090509400 ENOG411DVK1 PCMP-E55 Q9C866 PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430 63760 Pentatricopeptide repeat-containing protein At1g31430 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2206164; AT1G31430 Pentatricopeptide repeat-containing protein Os06g0597500 protein (PPR-repeat protein-like) Q69VD4 Q69VD4_ORYSJ Os06g0597500 OsJ_21869 OSNPB_060597500 P0417D05.32 ENOG411DVK0 Q9C606,Q9C609 Q9C606_ARATH,Q9C609_ARATH Coiled-coil protein, putative (DUF572) (Uncharacterized protein F14G11.5),At1g25682 (Coiled-coil protein (DUF572)) (Uncharacterized protein At1g25682) (Uncharacterized protein F14G11.11) 20735,35053 Coiled-coil protein, putative (DUF572) (Uncharacterized protein F14G11.5),At1g25682 (Coiled-coil protein (DUF572)) (Uncharacterized protein At1g25682) (Uncharacterized protein F14G11.11) locus:2824453;,locus:2824443; AT1G25988,AT1G25682 Coiled-coil domain-containing protein Nuclear protein-like (Os02g0324300 protein) Q6Z6T3 Q6Z6T3_ORYSJ Os02g0324300 OsJ_06494 OSNPB_020324300 P0688H12.36 ENOG411DVK7 MORC7,MORC4,MFB16.18 F4JRS4,F4KAF2,A0A1P8BEQ3,A0A1P8BEQ8 MORC7_ARATH,MORC4_ARATH,A0A1P8BEQ3_ARATH,A0A1P8BEQ8_ARATH Protein MICRORCHIDIA 7 (AtMORC7) (EC 3.6.-.-) (Protein CRT1-homolog 3) (CRT1-h3),Protein MICRORCHIDIA 4 (AtMORC4) (EC 3.6.-.-) (Protein CRT1-homolog 4) (CRT1-h4),Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein DISRUPTION PHENOTYPE: The double mutant atmorc4 atmorc7 exhibits a pathogen response phenotype with abnormal up-regulation of several genes involved in plant defense. {ECO:0000269|PubMed:27171361}. FUNCTION: Exhibits ATPase activity. Binds DNA/RNA in a non-specific manner and exhibits endonuclease activity. Probably involved in DNA repair. Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing. May also be involved in the regulation of chromatin architecture to maintain gene silencing. Together with MORC4, acts to suppress a wide set of non-methylated protein-coding genes, especially involved in pathogen response. Positive regulators of defense against the oomycete Hyaloperonospora arabidopsidis (Hpa) (PubMed:27171361). {ECO:0000250|UniProtKB:Q84WV6, ECO:0000269|PubMed:27171361}.,FUNCTION: Exhibits ATPase activity. Binds DNA/RNA in a non-specific manner and exhibits endonuclease activity. Probably involved in DNA repair. Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing. May also be involved in the regulation of chromatin architecture to maintain gene silencing. Together with MORC7, acts to suppress a wide set of non-methylated protein-coding genes, especially involved in pathogen response. Positive regulator of defense against the oomycete Hyaloperonospora arabidopsidis (Hpa) (PubMed:27171361). {ECO:0000250|UniProtKB:Q84WV6, ECO:0000269|PubMed:27171361}. 3.6.-.- 79573,89695,90104,69323 Protein MICRORCHIDIA 7 (AtMORC7) (EC 3.6.-.-) (Protein CRT1-homolog 3) (CRT1-h3),Protein MICRORCHIDIA 4 (AtMORC4) (EC 3.6.-.-) (Protein CRT1-homolog 4) (CRT1-h4),Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein membrane [GO:0016020]; nuclear body [GO:0016604]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; kinase activity [GO:0016301]; protein self-association [GO:0043621]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; defense response [GO:0006952]; DNA repair [GO:0006281]; gene silencing by RNA [GO:0031047]; positive regulation of defense response to oomycetes [GO:1902290]; regulation of chromatin silencing [GO:0031935]; regulation of DNA methylation [GO:0044030]; regulation of DNA repair [GO:0006282],nuclear body [GO:0016604]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; kinase activity [GO:0016301]; protein self-association [GO:0043621]; RNA binding [GO:0003723]; covalent chromatin modification [GO:0016569]; defense response [GO:0006952]; DNA repair [GO:0006281]; gene silencing by RNA [GO:0031047]; positive regulation of defense response to oomycetes [GO:1902290]; regulation of chromatin silencing [GO:0031935]; regulation of DNA methylation [GO:0044030]; regulation of DNA repair [GO:0006282],kinase activity [GO:0016301] locus:2117358;,locus:2163320; AT4G24970,AT5G50780 Histidine kinase- DNA gyrase B- and HSP90-like ATPase ATP-binding region, ATPase-like domain-containing protein-like (Os02g0469300 protein) (cDNA clone:J023003D17, full insert sequence),ATP-binding region, ATPase-like domain-containing protein-like (Os02g0469300 protein),Os04g0311100 protein (Fragment) Q6K8H1,Q6K8H0,Q0JE85 Q6K8H1_ORYSJ,Q6K8H0_ORYSJ,Q0JE85_ORYSJ OJ1057_F01.26-1 Os02g0469300 OSNPB_020469300,OJ1057_F01.26-2 Os02g0469300 OSNPB_020469300,Os04g0311100 Os04g0311100 OSNPB_040311100 ENOG411DVK6 MKP1 Q9C5S1 MKP1_ARATH Protein-tyrosine-phosphatase MKP1 (EC 3.1.3.48) (Mitogen-activated protein kinase phosphatase 1) (AtMKP1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions in Wassilewskija (Ws) ecotype (PubMed:11274055), but Columbia (Col) ecotype show growth defects, elevated levels of salicylic acid (SA) and constitutive defense responses (PubMed:19789277). {ECO:0000269|PubMed:11274055, ECO:0000269|PubMed:19789277}. Sensitive to genotoxic stress-J. Paszkowski-2001 FUNCTION: Protein-tyrosine-phosphatase that acts as a negative regulator of MPK6 and MPK3 signaling by dephosphorylating and repressing MPK6 and MPK3. Modulates defense response by repressing salicylic acid (SA) production, camalexin biosynthesis and SNC1-mediated responses. Acts as a negative regulator of MPK6-mediated pathogen-associated molecular pattern (PAMP) responses, including MPK6 and MPK3 activation, accumulation of extracellular reactive oxygen species and inhibition of seedling growth. Involved in UV-B stress tolerance. May be involved in salt and genotoxic stress responses. {ECO:0000269|PubMed:11274055, ECO:0000269|PubMed:12456655, ECO:0000269|PubMed:16913867, ECO:0000269|PubMed:19789277, ECO:0000269|PubMed:21447069, ECO:0000269|PubMed:21455789, ECO:0000269|PubMed:21790814}. MISCELLANEOUS: The observed mkp1 phenotype in Col ecotype is largely due to the Col-specific TIR-NB-LRR receptor-like protein SNC1, which is absent in Ws ecotype. {ECO:0000305|PubMed:19789277}. 3.1.3.48 85964 Protein-tyrosine-phosphatase MKP1 (EC 3.1.3.48) (Mitogen-activated protein kinase phosphatase 1) (AtMKP1) cytosol [GO:0005829]; MAP kinase tyrosine/serine/threonine phosphatase activity [GO:0017017]; protein tyrosine phosphatase activity [GO:0004725]; defense response [GO:0006952]; response to salt stress [GO:0009651]; response to UV-B [GO:0010224]; response to UV-C [GO:0010225] locus:2100601; AT3G55270 kinase phosphatase Os05g0115800 protein (Fragment) Q0DL92,A0A0P0WH40 Q0DL92_ORYSJ,A0A0P0WH40_ORYSJ Os05g0115800 Os05g0115800 OSNPB_050115800,Os05g0115800 OSNPB_050115800 ENOG411DVK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACT domain Os12g0163800 protein (Protein kinase family protein, putative, expressed) (cDNA, clone: J100060A02, full insert sequence),Os07g0203925 protein (Fragment) Q2QXA8,A0A0P0X3R1 Q2QXA8_ORYSJ,A0A0P0X3R1_ORYSJ Os12g0163800 LOC_Os12g06670 OSNPB_120163800,Os07g0203925 OSNPB_070203925 ENOG411DVK4 AtRLP52 Q7FZR1 Q7FZR1_ARATH Receptor like protein 52 (T1N24.21 protein) FUNCTION: Required for defense against powdery mildew pathogen. {ECO:0000269|PubMed:15923325}. 90357 Receptor like protein 52 (T1N24.21 protein) integral component of membrane [GO:0016021]; defense response to fungus [GO:0050832]; response to chitin [GO:0010200] locus:2180587; AT5G25910 receptor-like protein kinase Os06g0557100 protein (Putative serine-threonine protein kinase),Os06g0557400 protein Q5Z7H5,A0A0N7KMA0 Q5Z7H5_ORYSJ,A0A0N7KMA0_ORYSJ Os06g0557100 Os06g0557100 OsJ_21683 OSJNBa0090E14.8 OSNPB_060557100,Os06g0557400 OSNPB_060557400 ENOG411DVK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os02g0179000 protein A0A0P0VFS8 A0A0P0VFS8_ORYSJ Os02g0179000 OSNPB_020179000 ENOG411DVK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PostSET Os09g0556700 protein (Fragment) A0A0P0XQ57 A0A0P0XQ57_ORYSJ Os09g0556700 OSNPB_090556700 ENOG411DWR2 MQB2.23,T17F15.60 Q9FM05,Q9SU70,F4JCT1,A0A1I9LPB8 Q9FM05_ARATH,Q9SU70_ARATH,F4JCT1_ARATH,A0A1I9LPB8_ARATH At5g62910 (RING/U-box superfamily protein),At3g48070 (RING finger family protein) (RING/U-box superfamily protein) (Uncharacterized protein At3g48070) (Uncharacterized protein T17F15.60),RING/U-box superfamily protein 35985,35234,38990,33573 At5g62910 (RING/U-box superfamily protein),At3g48070 (RING finger family protein) (RING/U-box superfamily protein) (Uncharacterized protein At3g48070) (Uncharacterized protein T17F15.60),RING/U-box superfamily protein locus:2170708;,locus:2097930; AT5G62910,AT3G48070 Inherit from KOG: CCR4-NOT transcription complex subunit 4 OSJNBa0060P14.3 protein (Os04g0463700 protein) (cDNA clone:002-107-G12, full insert sequence) (cDNA clone:J013169C17, full insert sequence) (cDNA clone:J033088P15, full insert sequence),Os02g0580800 protein (Fragment) Q7XUS4,A0A0P0VKU0 Q7XUS4_ORYSJ,A0A0P0VKU0_ORYSJ Os04g0463700 OsJ_15083 OSJNBa0060P14.3 OSNPB_040463700,Os02g0580800 OSNPB_020580800 ENOG411E0N6 WDL3 Q84WL6,A0A1I9LQY3,F4J2V3,A0A1I9LQY4,A0A1I9LQY2 WDL3_ARATH,A0A1I9LQY3_ARATH,F4J2V3_ARATH,A0A1I9LQY4_ARATH,A0A1I9LQY2_ARATH Protein WVD2-like 3 (Protein WAVE-DAMPENED 2-LIKE3),TPX2 (Targeting protein for Xklp2) protein family FUNCTION: Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. Binds to, bundles and stabilizes microtubules. Required for the organization and stability of cortical microtubules in hypocotyls. Required for normal hypocotyl cell elongation. Acts as negative regulator of hypocotyl cell elongation in the light. {ECO:0000269|PubMed:23653471}. 37782,42273,38248,37909,42739 Protein WVD2-like 3 (Protein WAVE-DAMPENED 2-LIKE3),TPX2 (Targeting protein for Xklp2) protein family cortical microtubule [GO:0055028]; cortical microtubule organization [GO:0043622]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in roots, root hairs, cotyledons, hypocotyls, trichomes, flowers and siliques. {ECO:0000269|PubMed:23653471}. locus:2094583; AT3G23090 Targeting protein for Xklp2 (TPX2) NA NA NA NA NA NA NA ENOG411DW0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Arabidopsis protein of unknown function Os04g0562500 protein (Fragment) A0A0P0WDV1 A0A0P0WDV1_ORYSJ Os04g0562500 OSNPB_040562500 ENOG411DW0M DPMS1 Q9LM93 DPM1_ARATH Dolichol-phosphate mannosyltransferase subunit 1 (EC 2.4.1.83) (Dol-P-Man synthase1) (Dolichol-phosphate mannose synthase subunit 1) (DPM synthase subunit 1) DISRUPTION PHENOTYPE: Reduced root growth. Slight reduction of chlorophyll content. Wrinkled seed coat. Hypersensitivity to ammonium. {ECO:0000269|PubMed:21558543}. FUNCTION: Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins; catalytic subunit of the dolichol-phosphate mannose (DPM) synthase complex. Plays a role in plant development and physiology, sensitivity to ammonium stress and endoplasmic reticulum stress response. {ECO:0000269|PubMed:21558543}. MISCELLANEOUS: Plants over-expressing DPMS1 show altered stem branch diameter and morphology, perturbation of the vascular bundle arrangements, wrinkled seed coat and constitutive endoplasmic reticulum stress response. {ECO:0000269|PubMed:21558543}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. ARA:AT1G20575-MONOMER;MetaCyc:AT1G20575-MONOMER; 2.4.1.83 27676 Dolichol-phosphate mannosyltransferase subunit 1 (EC 2.4.1.83) (Dol-P-Man synthase1) (Dolichol-phosphate mannose synthase subunit 1) (DPM synthase subunit 1) dolichol-phosphate-mannose synthase complex [GO:0033185]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; dolichyl-phosphate beta-D-mannosyltransferase activity [GO:0004582]; protein glycosylation [GO:0006486]; response to ammonium ion [GO:0060359] locus:505006134; AT1G20575 dolichol-phosphate Dolichol-phosphate mannosyltransferase, putative, expressed (Os03g0824400 protein) (cDNA clone:001-009-D10, full insert sequence) Q10BB4 Q10BB4_ORYSJ Os03g0824400 LOC_Os03g60939 Os03g0824400 OsJ_13178 OSNPB_030824400 ENOG411DW0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protease do-like Os02g0712000 protein (Fragment) A0A0P0VNU6 A0A0P0VNU6_ORYSJ Os02g0712000 OSNPB_020712000 ENOG411DW0I EIF4B3 Q9SZP8 IF4B3_ARATH Eukaryotic translation initiation factor 4B3 (AtTif4B3) (eIF4B3) FUNCTION: Promotes the eIF4F and eIF4A RNA-dependent ATP-hydrolysis activity with different efficiency depending on mRNAs, thus providing mRNA discrimination during initiation of translation. {ECO:0000250|UniProtKB:Q9AUJ7}. 48987 Eukaryotic translation initiation factor 4B3 (AtTif4B3) (eIF4B3) nucleus [GO:0005634]; mRNA binding [GO:0003729]; protein homodimerization activity [GO:0042803]; translation initiation factor activity [GO:0003743] locus:2121264; AT4G38710 Eukaryotic translation initiation factor 4B Os02g0439700 protein (cDNA clone:J013118G17, full insert sequence) Q0E1I1 Q0E1I1_ORYSJ Os02g0439700 Os02g0439700 OsJ_06553 OSNPB_020439700 ENOG411DW05 PXC3 O22938 PXC3_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 (EC 2.7.10.1) (Protein PXY/TDR-CORRELATED 3) FUNCTION: Leucine-rich repeat receptor-like protein kinase that may play a role in vascular tissues development. {ECO:0000250|UniProtKB:Q9SJQ1}. 2.7.10.1 97245 Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 (EC 2.7.10.1) (Protein PXY/TDR-CORRELATED 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein tyrosine kinase activity [GO:0004714] TISSUE SPECIFICITY: Expressed in the vascular strands of cotyledons, the shoot apex, hypocotyls, roots, leaves, stems and flowers. {ECO:0000269|PubMed:23815750}. locus:2054421; AT2G41820 leucine-rich repeat receptor-like tyrosine-protein kinase Os07g0207100 protein (Fragment) Q0D7V2 Q0D7V2_ORYSJ Os07g0207100 Os07g0207100 OSNPB_070207100 ENOG411DW09 hcf243,HCF243 Q9LIM5,F4IXG8,B3H575 Q9LIM5_ARATH,F4IXG8_ARATH,B3H575_ARATH Chloroplast protein HCF243 (Serine/Threonine-kinase pakA-like protein) (Uncharacterized protein At3g15095),Serine/Threonine-kinase pakA-like protein 75578,61425,45365 Chloroplast protein HCF243 (Serine/Threonine-kinase pakA-like protein) (Uncharacterized protein At3g15095),Serine/Threonine-kinase pakA-like protein chloroplast [GO:0009507]; kinase activity [GO:0016301]; photosystem II assembly [GO:0010207],kinase activity [GO:0016301] locus:2086345; AT3G15095 NA Os06g0352900 protein,Os06g0352900 protein (Fragment) Q69SM9,A0A0P0WWU0 Q69SM9_ORYSJ,A0A0P0WWU0_ORYSJ Os06g0352900 OSJNBa0022O02.23 OSNPB_060352900,Os06g0352900 OSNPB_060352900 ENOG411DW08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os03g0823000 protein (Protein kinase domain containing protein, expressed) (Putative receptor-like protein kinase) Q852A9 Q852A9_ORYSJ OSJNBb0081B07.16 Os03g0823000 LOC_Os03g60810 OsJ_13163 OSNPB_030823000 ENOG411EGMD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGMH Q9LIJ9,Q1G3L8 Q9LIJ9_ARATH,Q1G3L8_ARATH Paired amphipathic helix (PAH2) superfamily protein 25782,33666 Paired amphipathic helix (PAH2) superfamily protein nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355] locus:4515103111;,locus:1009023259; AT3G22961,AT3G24093 Has 11 Blast hits to 11 proteins in 2 species Archae - 0 NA NA NA NA NA NA NA ENOG411E6IZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0930500 protein (cDNA clone:002-130-D01, full insert sequence) Q942W3 Q942W3_ORYSJ Os01g0930500 OSJNBa0052O12.33 OSNPB_010930500 P0506E04.11 ENOG411E6IY T2O9.60 Q9M1D5 Q9M1D5_ARATH At3g60080 (RING/U-box superfamily protein) (Uncharacterized protein At3g60080) (Uncharacterized protein T2O9.60) R-ATH-983168; 33798 At3g60080 (RING/U-box superfamily protein) (Uncharacterized protein At3g60080) (Uncharacterized protein T2O9.60) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2101447; AT3G60080 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E6IR CML47,CML30 Q9SN89,Q9MBG5 CML47_ARATH,CML30_ARATH Probable calcium-binding protein CML47 (Calmodulin-like protein 47),Probable calcium-binding protein CML30 (Calmodulin-like protein 30) FUNCTION: Potential calcium sensor. {ECO:0000250}. 21458,22696 Probable calcium-binding protein CML47 (Calmodulin-like protein 47),Probable calcium-binding protein CML30 (Calmodulin-like protein 30) calcium ion binding [GO:0005509] locus:2079122;,locus:2087002; AT3G47480,AT3G29000 EF hand family protein Os09g0412300 protein A3BYS1 A3BYS1_ORYSJ Os09g0412300 OsJ_29340 OSNPB_090412300 ENOG411E6IS Q9LW80 Q9LW80_ARATH LOW protein: ATP-dependent RNA helicase-like protein 17594 LOW protein: ATP-dependent RNA helicase-like protein helicase activity [GO:0004386] locus:2093392; AT3G16070 NA NA NA NA NA NA NA NA ENOG411E6IP BCB Q07488 BCB1_ARATH Blue copper protein (Blue copper-binding protein) (AtBCB) (Phytocyanin 1) (Stellacyanin) FUNCTION: Probably acts as an electron carrier. 20054 Blue copper protein (Blue copper-binding protein) (AtBCB) (Phytocyanin 1) (Stellacyanin) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; aluminum cation transport [GO:0015690]; cellular response to cold [GO:0070417]; defense response to fungus [GO:0050832]; oxidation-reduction process [GO:0055114]; regulation of lignin biosynthetic process [GO:1901141]; response to absence of light [GO:0009646]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Maximum levels are found in 35 day old plantlets when the rosette is mature, consisting of 8-10 fully expanded leaves, and as the floral stem starts to form. This level remains constant during the further life span of the plant. locus:2149249; AT5G20230 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E6IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0320600 protein A0A0P0VIB5 A0A0P0VIB5_ORYSJ Os02g0320600 OSNPB_020320600 ENOG411E6IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pentatricopeptide repeat-containing protein Os06g0136300 protein (cDNA clone:002-155-D11, full insert sequence) Q0DET4 Q0DET4_ORYSJ Os06g0136300 Os06g0136300 OsJ_20041 OSNPB_060136300 ENOG411E6IW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: HtrA serine peptidase Os01g0278600 protein (cDNA clone:J023056J07, full insert sequence),Os09g0436400 protein Q5NBK7,Q0J1J3 Q5NBK7_ORYSJ,Q0J1J3_ORYSJ Os01g0278600 OsJ_01298 OSNPB_010278600 P0025D05.17,Os09g0436400 OSNPB_090436400 ENOG411E6IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM domain Embryo sac 1 (Expressed protein) (LysM domain containing protein, expressed) (Os10g0524300 protein) (cDNA clone:001-112-G07, full insert sequence) Q8H095 Q8H095_ORYSJ EMSA1 LOC_Os10g38040 Os10g0524300 OSNPB_100524300 ENOG411E6IU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif Protein TIFY 11a (OsTIFY11a) (Jasmonate ZIM domain-containing protein 9) (OsJAZ9) (OsJAZ3),Os03g0180800 protein (Fragment) Q8GSI0,A0A0P0VTW7 TI11A_ORYSJ,A0A0P0VTW7_ORYSJ TIFY11A JAZ9 Os03g0180800 LOC_Os03g08310 OsJ_09656 OSJNBa0050H14.22 OSJNBb0076N15.8,Os03g0180800 OSNPB_030180800 FUNCTION: Repressor of jasmonate (JA) responses. Forms a ternary complex with RSS3 and BHLH94 to negatively regulate JA-responsive genes (PubMed:23715469). Acts as positive regulator of tolerance to salt stress (PubMed:19618278, PubMed:25617318). Involved in salt tolerance by modulating potassium homeostasis through JA signaling and regulation of the expression of potassium ion transporter genes. Acts as a transcriptional regulator targeted by the SCF(COI1) E3 ubiquitin ligase complexes in the JA signaling pathway, and interacts with BHLH062 that may directly regulate the ion transporter genes (PubMed:25617318). Acts as positive regulator of tolerance to dehydration stress (PubMed:19618278). Acts as negative regulator of tolerance to cold stress by interacting with MYB30 (PubMed:28062835). {ECO:0000269|PubMed:19618278, ECO:0000269|PubMed:23715469, ECO:0000269|PubMed:25617318, ECO:0000269|PubMed:28062835}. MISCELLANEOUS: Plants over-expressing TIFY11A/JAZ9 display increased tolerance to salt and dehydration stresses (PubMed:19618278). Plants silencing TIFY11A/JAZ9 exhibit decreased tolerance to salt stress (PubMed:25617318). Plants over-expressing TIFY11A/JAZ9 display decreased tolerance to cold stress (PubMed:28062835). {ECO:0000269|PubMed:19618278, ECO:0000269|PubMed:25617318, ECO:0000269|PubMed:28062835}. ENOG411E6IJ TIFY10B Q9S7M2,A0A1P8ATF8 TI10B_ARATH,A0A1P8ATF8_ARATH Protein TIFY 10B (Jasmonate ZIM domain-containing protein 2),TIFY domain/Divergent CCT motif family protein FUNCTION: Repressor of jasmonate responses. Jasmonoyl-isoleucine (JA-Ile) specifically promotes COI1-TIFY10B/JAZ2 interaction. Activated by MYC2, MYC3 and MYC4 transcription factors. {ECO:0000269|PubMed:19151223, ECO:0000269|PubMed:21335373}. 27072,24127 Protein TIFY 10B (Jasmonate ZIM domain-containing protein 2),TIFY domain/Divergent CCT motif family protein nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in cotyledons, hypocotyls, roots, sepals, petal vascular tissue and stigmas of developing flowers. Expressed in stamen filaments after jasmonic acid treatment. {ECO:0000269|PubMed:22173100}. locus:2027267; AT1G74950 tify 10b NA NA NA NA NA NA NA ENOG411E6IK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0939400 protein Q5JLP8 Q5JLP8_ORYSJ Os01g0939400 Os01g0939400 B1150F11.14 OsJ_04714 OSNPB_010939400 P0504E02.38 ENOG411E6IH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bowman-Birk serine protease inhibitor family protein, expressed (Os03g0823400 protein) (Putative Bowman-Birk serine protease inhibitor) Q84LH6 Q84LH6_ORYSJ OSJNBb0081B07.13 LOC_Os03g60840 Os03g0823400 OsJ_13170 OSNPB_030823400 ENOG411E6II MLP165,MLP34,MLP28,MLP31,MLP43,MLP15,MLP36 Q9C7I7,Q9SSK7,Q9SSK9,Q941R6,Q9SSK5,Q941R7,Q941R8,A8MR61,A8MRH3,F4I6Y3,F4I6Y8,B3H4F3 ML165_ARATH,MLP34_ARATH,MLP28_ARATH,MLP31_ARATH,MLP43_ARATH,Q941R7_ARATH,Q941R8_ARATH,A8MR61_ARATH,A8MRH3_ARATH,F4I6Y3_ARATH,F4I6Y8_ARATH,B3H4F3_ARATH MLP-like protein 165,MLP-like protein 34,MLP-like protein 28,MLP-like protein 31,MLP-like protein 43,Major latex-like protein (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative Csf-2-related protein) (Uncharacterized protein At1g70880/F15H11_28),Major latex-like protein (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein FUNCTION: Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands. {ECO:0000269|PubMed:19326460}. 17841,35570,37615,19138,17889,17861,8293,32278,22559,27545,7380,19340 MLP-like protein 165,MLP-like protein 34,MLP-like protein 28,MLP-like protein 31,MLP-like protein 43,Major latex-like protein (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative Csf-2-related protein) (Uncharacterized protein At1g70880/F15H11_28),Major latex-like protein (Polyketide cyclase/dehydrase and lipid transport superfamily protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein defense response [GO:0006952]; response to biotic stimulus [GO:0009607],chloroplast [GO:0009507]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2206737;,locus:2013930;,locus:2014000;,locus:2013970;,locus:2013950;,locus:2013920;,locus:2824628; AT1G35260,AT1G70850,AT1G70830,AT1G70840,AT1G70890,AT1G70880,AT1G70860 MLP-like protein NA NA NA NA NA NA NA ENOG411E6IN LPPE1,LPPE2 F4J220,Q6NQL6 LPPE1_ARATH,LPPE2_ARATH Lipid phosphate phosphatase epsilon 1, chloroplastic (AtLPPE1) (EC 3.1.3.-) (Phosphatidic acid phosphatase epsilon 1) (Plastidic phosphatidic acid phosphatase epsilon 1),Lipid phosphate phosphatase epsilon 2, chloroplastic (AtLPPE2) (EC 3.1.3.-) (Phosphatidic acid phosphatase epsilon 2) (Plastidic phosphatidic acid phosphatase epsilon 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17652095}. FUNCTION: Exhibits phosphatidate phosphatase (PAP) activity in vitro. May play a secondary role as PAP in plastids. {ECO:0000269|PubMed:17652095}. 3.1.3.4; 3.1.3.- 30595,31530 Lipid phosphate phosphatase epsilon 1, chloroplastic (AtLPPE1) (EC 3.1.3.-) (Phosphatidic acid phosphatase epsilon 1) (Plastidic phosphatidic acid phosphatase epsilon 1),Lipid phosphate phosphatase epsilon 2, chloroplastic (AtLPPE2) (EC 3.1.3.-) (Phosphatidic acid phosphatase epsilon 2) (Plastidic phosphatidic acid phosphatase epsilon 2) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; phosphatidate phosphatase activity [GO:0008195]; diacylglycerol biosynthetic process [GO:0006651] TISSUE SPECIFICITY: Expressed in root tips, root branch points, cotyledons and leaves. {ECO:0000269|PubMed:17652095}. locus:2077987;,locus:2154875; AT3G50920,AT5G66450 Phosphatidic acid NA NA NA NA NA NA NA ENOG411E6IM O64586 O64586_ARATH Pollen Ole e 1 allergen and extensin family protein (Putative proline-rich glycoprotein) 18833 Pollen Ole e 1 allergen and extensin family protein (Putative proline-rich glycoprotein) locus:2061554; AT2G34700 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411E6IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0176300 protein) Q33AI9 Q33AI9_ORYSJ Os10g0176300 LOC_Os10g09760 OSNPB_100176300 ENOG411E6IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain NA NA NA NA NA NA NA ENOG411E6IA A0A1P8B011 A0A1P8B011_ARATH Uncharacterized protein 30046 Uncharacterized protein NA NA NA NA NA NA NA NA ENOG411E6IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0665250 protein (cDNA, clone: J080071F19, full insert sequence),Os04g0558700 protein (cDNA clone:002-169-C01, full insert sequence) B7F9I4,Q0JB38 B7F9I4_ORYSJ,Q0JB38_ORYSJ Os02g0665250 Os02g0665250 OSNPB_020665250,Os04g0558700 Os04g0558700 OSNPB_040558700 ENOG411E6IG Q9LUR8,Q9LUR6,Q8GYY6 Q9LUR8_ARATH,Q9LUR6_ARATH,Q8GYY6_ARATH Pollen Ole e 1 allergen and extensin family protein,At3g16670/MGL6_12 (Pollen Ole e 1 allergen and extensin family protein),At3g16660 (Pollen Ole e 1 allergen and extensin family protein) (Uncharacterized protein At3g16660/MGL6_11) 21311,15875,17857 Pollen Ole e 1 allergen and extensin family protein,At3g16670/MGL6_12 (Pollen Ole e 1 allergen and extensin family protein),At3g16660 (Pollen Ole e 1 allergen and extensin family protein) (Uncharacterized protein At3g16660/MGL6_11) integral component of membrane [GO:0016021],response to oxidative stress [GO:0006979] locus:2089328;,locus:2089313; AT3G16670,AT3G16660 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411E6ID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance response protein 206 Dirigent protein Q8S5Q4 Q8S5Q4_ORYSJ OSJNBb0058B20.9 LOC_Os10g25870 Os10g0398100 OSNPB_100398100 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E6I8 A0A1P8BEY1 A0A1P8BEY1_ARATH Glycine-rich RNA-binding-like protein 12639 Glycine-rich RNA-binding-like protein RNA binding [GO:0003723] RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os01g0974600 protein (Os01g0974701 protein) (cDNA, clone: J053054L13, full insert sequence) B7F8B0 B7F8B0_ORYSJ Os01g0974701 Os01g0974600 OsJ_04953 OSNPB_010974701 ENOG411E6I9 HSBP Q8GW48 Q8GW48_ARATH At4g15810 (Heat shock factor binding protein) Early flowering reduced fertility aborted seeds. Reduced fertility; Early flowering-T. Jinn-2010 R-ATH-3371568;R-ATH-3371571; 9347 At4g15810 (Heat shock factor binding protein) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; cellular heat acclimation [GO:0070370]; response to heat [GO:0009408]; seed development [GO:0048316] locus:1005716315; AT4G15802 Heat shock factor binding protein 1 Os06g0274000 protein (Putative heat shock factor binding protein) Q9FP22 Q9FP22_ORYSJ Os06g0274000 Os06g0274000 OsJ_20949 OSNPB_060274000 P0038C05.2 P0676F10.13 ENOG411E6I2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6I0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E6I1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0203800 protein (cDNA clone:002-101-B01, full insert sequence) Q0J7C5 Q0J7C5_ORYSJ Os08g0203800 Os08g0203800 OSNPB_080203800 ENOG411E6I6 Q6DST6,F4I397 Q6DST6_ARATH,F4I397_ARATH At1g36940 (Myotubularin-like protein),Myotubularin-like protein 20254,24608 At1g36940 (Myotubularin-like protein),Myotubularin-like protein apoplast [GO:0048046] locus:2019814; AT1G36940 NA NA NA NA NA NA NA NA ENOG411E6I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411E6I4 A0A1P8B9P5,Q6GKY0,F4JY14 A0A1P8B9P5_ARATH,Q6GKY0_ARATH,F4JY14_ARATH E3 ubiquitin-protein ligase,At5g18540 (E3 ubiquitin-protein ligase) 13420,18471,18215 E3 ubiquitin-protein ligase,At5g18540 (E3 ubiquitin-protein ligase) ligase activity [GO:0016874] locus:2182983; AT5G18540 NA Os07g0669600 protein (cDNA clone:J013072A15, full insert sequence) Q7EZT2 Q7EZT2_ORYSJ P0625E02.128 Os07g0669600 OSNPB_070669600 ENOG411E6I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain Os02g0810600 protein (Fragment) A0A0P0VR65 A0A0P0VR65_ORYSJ Os02g0810600 OSNPB_020810600 ENOG411DWK9 Q8H1R6,A0A1P8B4S0 Q8H1R6_ARATH,A0A1P8B4S0_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At4g21520),Transducin/WD40 repeat-like superfamily protein 47543,43434 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein At4g21520),Transducin/WD40 repeat-like superfamily protein locus:2119617; AT4G21520 WD domain G-beta repeat Os03g0738000 protein (Fragment) Q0DNR7 Q0DNR7_ORYSJ Os03g0738000 Os03g0738000 OSNPB_030738000 ENOG411EKVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic translation initiation factor eIF2A NA NA NA NA NA NA NA ENOG411EGT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411EKX8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD repeat-containing protein 5-like Os07g0572000 protein (Putative WD repeat domain 5 protein) Q6YTU7 Q6YTU7_ORYSJ Os07g0572000 OJ1121_A05.20 OsJ_24814 OSNPB_070572000 ENOG411DZF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os10g0370100 protein),Os11g0462900 protein,Os10g0370100 protein (Fragment) Q109S4,A0A0P0Y299,A0A0P0XTD5 Q109S4_ORYSJ,A0A0P0Y299_ORYSJ,A0A0P0XTD5_ORYSJ Os10g0370100 LOC_Os10g22484 Os10g0370100 OSNPB_100370100,Os11g0462900 OSNPB_110462900,Os10g0370100 OSNPB_100370100 ENOG411EA5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EA5P Q9M122,A0A1P8B757 GEML2_ARATH,A0A1P8B757_ARATH GEM-like protein 2,GRAM domain family protein 25913,21451 GEM-like protein 2,GRAM domain family protein locus:2133387; AT4G01600 GRAM domain NA NA NA NA NA NA NA ENOG411EA5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411EA5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os07g0242700 protein A0A0P0X4C5 A0A0P0X4C5_ORYSJ Os07g0242700 OSNPB_070242700 ENOG411EA5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase (EC 3.2.2.22),Os06g0155900 protein,Os02g0616199 protein,Os02g0617000 protein (Fragment) Q6K8T6,Q5VMB0,A0A0P0VLZ1,A0A0P0VM22,A0A0P0VLN4 Q6K8T6_ORYSJ,Q5VMB0_ORYSJ,A0A0P0VLZ1_ORYSJ,A0A0P0VM22_ORYSJ,A0A0P0VLN4_ORYSJ Os02g0616800 Os02g0616800 OJ1792_D02.18 OSNPB_020616800,P0046E09.9-1 Os06g0155900 OSJNBa0085L11.31-1 OSNPB_060155900,Os02g0616199 OSNPB_020616199,Os02g0617075 OSNPB_020617075,Os02g0617000 OSNPB_020617000 ENOG411EA5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclic nucleotide-binding domain NA NA NA NA NA NA NA ENOG411EA5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA5V Q9FM89 FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 48148 F-box/FBD/LRR-repeat protein At5g56420 locus:2161053; AT5G56420 F-box FBD LRR-repeat protein NA NA NA NA NA NA NA ENOG411EA5Y DIR20,DIR22,DIR3,DIR8 Q9C891,Q66GI2,Q9FI66,F4JDF3 DIR20_ARATH,DIR22_ARATH,DIR3_ARATH,DIR8_ARATH Dirigent protein 20 (AtDIR20),Dirigent protein 22 (AtDIR22),Dirigent protein 3 (AtDIR3),Dirigent protein 8 (AtDIR8) FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000250}. 20618,13604,20897,18875 Dirigent protein 20 (AtDIR20),Dirigent protein 22 (AtDIR22),Dirigent protein 3 (AtDIR3),Dirigent protein 8 (AtDIR8) apoplast [GO:0048046]; isomerase activity [GO:0016853] locus:2035661;,locus:2091536;,locus:2154359;,locus:2091551; AT1G55210,AT3G13660,AT5G49040,AT3G13662 Dirigent-like protein NA NA NA NA NA NA NA ENOG411EA5X APRR3,PRR3 Q9LVG4,A0A1P8BEW7,F4JXG7 APRR3_ARATH,A0A1P8BEW7_ARATH,F4JXG7_ARATH Two-component response regulator-like APRR3 (Pseudo-response regulator 3),Pseudo-response regulator 3 DISRUPTION PHENOTYPE: Shorter clock period but no effect on clock phase. {ECO:0000269|PubMed:14605371}. FUNCTION: Controls photoperiodic flowering response. Component of the circadian clock. Controls the degradation of APRR1/TOC1 by the SCF(ZTL) complex. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. {ECO:0000269|PubMed:11100772}. 55286,45470,58599 Two-component response regulator-like APRR3 (Pseudo-response regulator 3),Pseudo-response regulator 3 nucleus [GO:0005634]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; rhythmic process [GO:0048511]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay signal transduction system [GO:0000160],nucleus [GO:0005634]; negative regulation of protein binding [GO:0032091]; phosphorelay signal transduction system [GO:0000160]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355] locus:2164160; AT5G60100 pseudo-response regulator 3 NA NA NA NA NA NA NA ENOG411EA5Z PMIR2 Q7Y219,A0A1R7T374 PMIR2_ARATH,A0A1R7T374_ARATH Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 2,Light-independent protochlorophyllide reductase subunit FUNCTION: Seems not necessary for chloroplast and nuclear photorelocation movements. {ECO:0000269|PubMed:26324877}. 107939,106523 Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 2,Light-independent protochlorophyllide reductase subunit locus:2179729; AT5G26160 NA NA NA NA NA NA NA NA ENOG411EA5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411EA5C A0A1P8AZT2,Q9ZUH9 A0A1P8AZT2_ARATH,Q9ZUH9_ARATH Uncharacterized protein,Expressed protein 37590,31822 Uncharacterized protein,Expressed protein locus:2047535; AT2G24140 Pfam:DUF593 NA NA NA NA NA NA NA ENOG411EA5B PTEN2B Q8H106 PTN2B_ARATH Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2B (EC 3.1.3.48) (EC 3.1.3.67) (Protein PHOSPHATASE AND TENSIN HOMOLOG 2-b) (AtPTEN2b) (AtPTEN3) FUNCTION: Protein tyrosine phosphatase that exhibits also a weak lipid phosphatase activity towards PtdIns(3)P. {ECO:0000269|PubMed:21864294}. ARA:AT3G50110-MONOMER; 3.1.3.48; 3.1.3.67 70073 Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2B (EC 3.1.3.48) (EC 3.1.3.67) (Protein PHOSPHATASE AND TENSIN HOMOLOG 2-b) (AtPTEN2b) (AtPTEN3) cytosol [GO:0005829]; phosphatidylinositol phosphate phosphatase activity [GO:0052866]; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity [GO:0016314]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; lipid metabolic process [GO:0006629]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed, at low levels, in seedlings, roots, stems, leaves, flowers and siliques. However, at protein level, not observed in older leaves, flowers and siliques. {ECO:0000269|PubMed:21864294}. locus:2083168; AT3G50110 Dual specificity phosphatase catalytic domain NA NA NA NA NA NA NA ENOG411EA5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAB Os03g0843100 protein (Putative GTP-binding protein) (Ras-related protein Rab11C, putative, expressed) (cDNA clone:001-035-C06, full insert sequence) (cDNA clone:006-304-A01, full insert sequence) (cDNA clone:J013000K22, full insert sequence) Q75LE2 Q75LE2_ORYSJ OSJNBa0032G11.3 LOC_Os03g62600 Os03g0843100 OsJ_13326 OSNPB_030843100 ENOG411EA5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-binding dehydrogenase Os10g0561100 protein (Oxidoreductase, zinc-binding dehydrogenase family protein, expressed) (Putative quinone oxidoreductase) (cDNA clone:002-172-G10, full insert sequence) Q336S6 Q336S6_ORYSJ OSJNBb0089A17.10 LOC_Os10g41170 Os10g0561100 OSNPB_100561100 ENOG411EA5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Telomere repeat-binding protein NA NA NA NA NA NA NA ENOG411EA5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mechanosensitive ion channel NA NA NA NA NA NA NA ENOG411EA5H Q8GXC7 FBK50_ARATH F-box/kelch-repeat protein At3g06240 48626 F-box/kelch-repeat protein At3g06240 locus:2082410; AT3G06240 F-box associated NA NA NA NA NA NA NA ENOG411EA5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0778600 protein),Os03g0712766 protein,Os03g0780000 protein,Os03g0779000 protein (Fragment),Os03g0779800 protein,Os03g0778700 protein,Os03g0780301 protein,Os03g0778500 protein,Os03g0779600 protein,Os03g0778550 protein,Os03g0779900 protein Q8S7H4,B9FB67,Q8S7H1,Q0DN28,A3AN94,A0A0N7KI53,A0A0P0W4B8,A0A0P0W3M2,A0A0P0W495,A0A0P0W3R2,A0A0P0W3S3 Q8S7H4_ORYSJ,B9FB67_ORYSJ,Q8S7H1_ORYSJ,Q0DN28_ORYSJ,A3AN94_ORYSJ,A0A0N7KI53_ORYSJ,A0A0P0W4B8_ORYSJ,A0A0P0W3M2_ORYSJ,A0A0P0W495_ORYSJ,A0A0P0W3R2_ORYSJ,A0A0P0W3S3_ORYSJ OSJNBa0010I09.18 Os03g0778600 LOC_Os03g56714 OSNPB_030778600,Os03g0712766 OsJ_12329 OSNPB_030712766,OSJNBa0010I09.27 Os03g0780000 LOC_Os03g56781 OSNPB_030780000,Os03g0779000 OSNPB_030779000,Os03g0779800 OsJ_12802 OSNPB_030779800,Os03g0778700 OSNPB_030778700,Os03g0780301 OSNPB_030780301,Os03g0778500 OSNPB_030778500,Os03g0779600 OSNPB_030779600,Os03g0778550 OSNPB_030778550,Os03g0779900 OSNPB_030779900 ENOG411EA5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uroporphyrinogen decarboxylase (URO-D) NA NA NA NA NA NA NA ENOG411EA5M Q1H5A5,A0A1R7T3G9 Q1H5A5_ARATH,A0A1R7T3G9_ARATH At5g18760 (RING/U-box superfamily protein),RING/U-box superfamily protein 45378,38658 At5g18760 (RING/U-box superfamily protein),RING/U-box superfamily protein integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2144890; AT5G18760 RINGv NA NA NA NA NA NA NA ENOG411EA5N MIF21.16 Q9LUA7 Q9LUA7_ARATH DUF868 family protein (DUF868) 35866 DUF868 family protein (DUF868) locus:2164738; AT5G48270 Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411EA51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DALR_1 NA NA NA NA NA NA NA ENOG411EA53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA small_GTPase NA NA NA NA NA NA NA ENOG411EA52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EA55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide methionine sulfoxide reductase NA NA NA NA NA NA NA ENOG411EA59 RTNLB7 Q9M145 RTNLG_ARATH Reticulon-like protein B7 (AtRTNLB7) 27563 Reticulon-like protein B7 (AtRTNLB7) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] AT4G01230 Reticulon NA NA NA NA NA NA NA ENOG411EA58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fructose-bisphosphate aldolase class-I NA NA NA NA NA NA NA ENOG411DZFG LON1,LON3,LON4 P93655,Q9M9L8,Q9M9L7,A0A1I9LLK4,A0A1I9LME3 LONM1_ARATH,LONM3_ARATH,LONM4_ARATH,A0A1I9LLK4_ARATH,A0A1I9LME3_ARATH Lon protease homolog 1, mitochondrial (EC 3.4.21.53),Lon protease homolog 3, mitochondrial (EC 3.4.21.53),Lon protease homolog 4, chloroplastic/mitochondrial (AtLon4) (EC 3.4.21.53),Lon protease homolog, mitochondrial (EC 3.4.21.-),Lon protease-like protein Dwarf; Delayed root growth and seedling establishment; Abnormal mitochondria morphology; Low germination rate at high temperature-P. Hatzopoulos-2009 FUNCTION: ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner. {ECO:0000255|HAMAP-Rule:MF_03120, ECO:0000269|PubMed:19076295}.,FUNCTION: ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner. {ECO:0000255|HAMAP-Rule:MF_03120}.,FUNCTION: ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner. {ECO:0000256|HAMAP-Rule:MF_03120}. MISCELLANEOUS: This protein may be expected to contain an N-terminal transit peptide but none has been predicted. {ECO:0000255|HAMAP-Rule:MF_03120}. 3.4.21.53,3.4.21.- 103930,103476,104925,103604,15079 Lon protease homolog 1, mitochondrial (EC 3.4.21.53),Lon protease homolog 3, mitochondrial (EC 3.4.21.53),Lon protease homolog 4, chloroplastic/mitochondrial (AtLon4) (EC 3.4.21.53),Lon protease homolog, mitochondrial (EC 3.4.21.-),Lon protease-like protein cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; mitochondrial light strand promoter anti-sense binding [GO:0070361]; serine-type endopeptidase activity [GO:0004252]; misfolded or incompletely synthesized protein catabolic process [GO:0006515]; mitochondrion organization [GO:0007005],mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; mitochondrial light strand promoter anti-sense binding [GO:0070361]; serine-type endopeptidase activity [GO:0004252]; misfolded or incompletely synthesized protein catabolic process [GO:0006515]; mitochondrion organization [GO:0007005],chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; mitochondrial light strand promoter anti-sense binding [GO:0070361]; serine-type endopeptidase activity [GO:0004252]; misfolded or incompletely synthesized protein catabolic process [GO:0006515]; mitochondrion organization [GO:0007005],mitochondrial matrix [GO:0005759]; ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; sequence-specific DNA binding [GO:0043565]; serine-type endopeptidase activity [GO:0004252]; cellular response to oxidative stress [GO:0034599]; chaperone-mediated protein complex assembly [GO:0051131]; misfolded or incompletely synthesized protein catabolic process [GO:0006515]; oxidation-dependent protein catabolic process [GO:0070407]; regulation of mitochondrial DNA replication [GO:0090296],ATP binding [GO:0005524]; ATP-dependent peptidase activity [GO:0004176]; serine-type endopeptidase activity [GO:0004252]; protein catabolic process [GO:0030163] locus:2148458;,locus:2074454;,locus:2074469; AT5G26860,AT3G05780,AT3G05790 ATP-dependent serine protease that mediates the selective degradation of misfolded unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner (By similarity) NA NA NA NA NA NA NA ENOG411DZFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0626900 protein (cDNA clone:J023099H13, full insert sequence) Q5ZE55 Q5ZE55_ORYSJ Os01g0626900 OsJ_02677 OSNPB_010626900 P0006C01.29 P0688A04.7 ENOG411DZFI PHL11 C0SVS4,A0A1P8BAT9 PHLB_ARATH,A0A1P8BAT9_ARATH Myb family transcription factor PHL11 (Protein PHR1-LIKE 11),Homeodomain-like superfamily protein 31105,25328 Myb family transcription factor PHL11 (Protein PHR1-LIKE 11),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2157146; AT5G45580 Myb family transcription factor Os02g0700300 protein (cDNA clone:001-028-A10, full insert sequence) Q0DYD6 Q0DYD6_ORYSJ Os02g0700300 Os02g0700300 OSNPB_020700300 ENOG411DZFK CCR1,CCR2 Q9S7D9,O80963 ACCR1_ARATH,ACCR2_ARATH Serine/threonine-protein kinase-like protein CCR1 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 1) (AtCRR1),Serine/threonine-protein kinase-like protein CCR2 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 2) (AtCRR2) Increased number of lateral root meristems greater than acr4 single mutant alone. FUNCTION: Serine/threonine-protein kinase with low activity. 2.7.11.1 84185,85303 Serine/threonine-protein kinase-like protein CCR1 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 1) (AtCRR1),Serine/threonine-protein kinase-like protein CCR2 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 2) (AtCRR2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; protein kinase activity [GO:0004672]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in roots, leaves, shoot apical meristems (SAM), and floral buds. {ECO:0000269|PubMed:15549374}. locus:2075074;,locus:2056033; AT3G09780,AT2G39180 STYKc NA NA NA NA NA NA NA ENOG411DXVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GDP-D-glucose phosphorylase Os01g0901300 protein A0A0P0VBP6 A0A0P0VBP6_ORYSJ Os01g0901300 OSNPB_010901300 ENOG411DXVN Q9SD34 C3H44_ARATH Zinc finger CCCH domain-containing protein 44 (AtC3H44) 142092 Zinc finger CCCH domain-containing protein 44 (AtC3H44) DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:2080863; AT3G51120 Plus3 Os10g0511800 protein,Os10g0511900 protein (Fragment),Os03g0112600 protein A0A0N7KS24,A0A0P0XW57,A0A0P0VS40 A0A0N7KS24_ORYSJ,A0A0P0XW57_ORYSJ,A0A0P0VS40_ORYSJ Os10g0511800 OSNPB_100511800,Os10g0511900 OSNPB_100511900,Os03g0112600 OSNPB_030112600 ENOG411DXVJ CG1 Q9FWS3,A0A1P8AU48 C3H16_ARATH,A0A1P8AU48_ARATH Zinc finger CCCH domain-containing protein 16 (AtC3H16),Zinc finger C-x8-C-x5-C-x3-H type family protein 46798,41078 Zinc finger CCCH domain-containing protein 16 (AtC3H16),Zinc finger C-x8-C-x5-C-x3-H type family protein cytoplasm [GO:0005737]; nuclear envelope [GO:0005635]; nuclear pore [GO:0005643]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; mRNA transport [GO:0051028]; negative regulation of brassinosteroid mediated signaling pathway [GO:1900458]; protein transport [GO:0015031],metal ion binding [GO:0046872] locus:2018452; AT1G75340 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 46 (OsC3H46) (Protein LEAF AND TILLER ANGLE INCREASED CONTROLLER) (OsLIC),Os06g0704400 protein (Fragment) Q5Z807,A0A0P0X0S4 C3H46_ORYSJ,A0A0P0X0S4_ORYSJ LIC Os06g0704300 LOC_Os06g49080 OJ1215_E11.23,Os06g0704400 OSNPB_060704400 FUNCTION: Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. MISCELLANEOUS: Plants silencing LIC are short, have increased leaf and tiller angles, and display both reduced number of rachises and seeds (PubMed:18953406). Plants over-expressing LIC show erect leaves (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. ENOG411DXVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein Q5VRN2 Q5VRN2_ORYSJ Os06g0109300 OsJ_19853 OSJNBa0004I20.7 OSNPB_060109300 P0514G12.31 ENOG411DXVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0682800 protein Q0DA26 Q0DA26_ORYSJ Os06g0682800 Os06g0682800 OSNPB_060682800 ENOG411DXVT Q9LYI6,F4JZD5 Q9LYI6_ARATH,F4JZD5_ARATH Alkaline phytoceramidase (APHC) (At5g11870) (Uncharacterized protein F14F18_40),Alkaline phytoceramidase (APHC) 29817,30654 Alkaline phytoceramidase (APHC) (At5g11870) (Uncharacterized protein F14F18_40),Alkaline phytoceramidase (APHC) integral component of membrane [GO:0016021] locus:2143034; AT5G11870 NA Os01g0197500 protein A0A0P0UZF6 A0A0P0UZF6_ORYSJ Os01g0197500 OSNPB_010197500 ENOG411DXVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF828 Os10g0568300 protein,Os10g0568100 protein A0A0N7KS88,A0A0P0XXG9 A0A0N7KS88_ORYSJ,A0A0P0XXG9_ORYSJ Os10g0568300 OSNPB_100568300,Os10g0568100 OSNPB_100568100 ENOG411DXVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldehyde dehydrogenase family Mitochondrial aldehyde dehydrogenase ALDH2a (Os02g0730000 protein) (Putative mitochondrial aldehyde dehydrogenase ALDH2a) (cDNA clone:J033042M19, full insert sequence),Os02g0730000 protein Q9LRI6,A0A0N7KG13 Q9LRI6_ORYSJ,A0A0N7KG13_ORYSJ Aldh2a P0617A09.7-2 Os02g0730000 OsJ_08254 OSJNBa0072H09.28-2 OSNPB_020730000,Os02g0730000 OSNPB_020730000 ENOG411DXVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone Nuclear transcription factor Y subunit C-4 (OsNF-YC4) (Transcriptional activator HAP5B) (OsHAP5B) Q655V5 NFYC4_ORYSJ NFYC4 HAP5B Os06g0667100 LOC_Os06g45640 OsJ_22293 P0637D03.35 FUNCTION: Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. ENOG411DXVZ KNAT1 P46639 KNAT1_ARATH Homeobox protein knotted-1-like 1 (Protein BREVIPEDICELLUS) (Protein KNAT1) The alteration produced in fruits by the as1 mutation was partially alleviated in the double mutants. Repla were narrow practically reverting to the appearance of the wild type and numbers of cells in both repla and valves were different from those of the as1 mutants.,Ectopic stipules observed in cauline leaves of as1;axr1 plants are not found. Leaves have an as1-like morphology.,Fruits produced by bp-1 knat2 and bp-1 knat2 plants showed a wild-type aspect both in replum and valves.,Fruits of this double mutant exhibited a more severe replumless phenotype than rpl-2 similar to that shown by the strong rpl-3 mutant.,Additive with respect to both single mutants. short internodes down-ward orientation of siliques and organ clusters. Increased branching. Fruit defects.,Similar to bp single mutants.,Similar to bp;pny double mutant.,Partially rescues the downward orientation of siliques characteristic of bp single mutants. Rescue of partial loss of apical dominance phenotype characteristic of bp mutants. Short plants although taller than bp single mutants. Partial rescue of primary inflorescence stem internode length characteristic of bp single mutants.,Partially suppresses pny;bp phenotypes such as dwarfism loss of apical dominance and silique orientation.,Fully rescues downward orientation of siliques characteristic of bp single mutants. Shorter than WT. Rescuse partial loss of apical dominance characteristic of single bp mutants. Partial rescue of primary inflorescence internode length characteristic of bp single mutants.,Similar to knat6;bp;pny except htat shows greater suppression on bp pny silique orientation defects. Short inflorescence stems; Downward-pointing flowers and siliques-C. Riggs-2002 FUNCTION: May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. 45836 Homeobox protein knotted-1-like 1 (Protein BREVIPEDICELLUS) (Protein KNAT1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell fate commitment [GO:0045165]; cell fate specification [GO:0001708]; xylem and phloem pattern formation [GO:0010051]; xylem development [GO:0010089] TISSUE SPECIFICITY: Expressed in the vegetative meristem. {ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. locus:2128828; AT4G08150 homeobox protein Homeobox protein knotted-1-like 6 (Homeobox protein OSH1) (Homeobox protein knotted-1-like 1) (Oskn1),Homeobox protein knotted-1-like 7 (Homeobox protein HOS13) (Homeobox protein OSH3),Homeobox protein knotted-1-like 12 (Homeobox protein HOS3) (Homeobox protein OSH15) (Homeobox protein knotted-1-like 3) (Oskn3) P46609,Q948L5,O80416 KNOS6_ORYSJ,KNOS7_ORYSJ,KNOSC_ORYSJ OSH1 Os03g0727000 LOC_Os03g51690 OSJNBa0013A09.5,OSH3 HOS13 Os03g0727200 LOC_Os03g51710 OSJNBa0013A09.3,OSH15 HOS3 Os07g0129700 LOC_Os07g03770 OSJNBa0088O14.22 P0483E09.2 FUNCTION: Probable transcription factor that regulates genes involved in development. May be involved in shoot formation during embryogenesis. Overexpression in transgenic plants causes altered leaf morphology. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:10488233, ECO:0000269|PubMed:8755613, ECO:0000269|PubMed:9869405}.,FUNCTION: Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.,FUNCTION: Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. ENOG411DXVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0726000 protein (Putative fasciclin-like arabinogalactan-protein) (cDNA clone:J023096L20, full insert sequence) (cDNA clone:J023150F23, full insert sequence) Q6Z347 Q6Z347_ORYSJ Os02g0726000 B1121A12.6 OJ1124_G07.29 OSNPB_020726000 ENOG411DXV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0702900 protein Q75I91 Q75I91_ORYSJ OSJNBa0004L11.17 Os03g0702900 LOC_Os03g49590 OsJ_12261 OSNPB_030702900 ENOG411DXV4 XTH30,XTH29 Q38908,Q8L7H3,A0A1P8B8L6 XTH30_ARATH,XTH29_ARATH,A0A1P8B8L6_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 30 (At-XTH30) (XTH-30) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 29 (At-XTH29) (XTH-29) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. MISCELLANEOUS: In contrast to group 1 and group 2 endotransglucosylase/hydrolase proteins, it may not contain the ligase activity, and may catalyze endohydrolysis xyloglucan polymers only. ARA:AT1G32170-MONOMER;,ARA:AT4G18990-MONOMER; 2.4.1.207 39888,41215,32832 Probable xyloglucan endotransglucosylase/hydrolase protein 30 (At-XTH30) (XTH-30) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 29 (At-XTH29) (XTH-29) (EC 2.4.1.207),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Predominantly expressed in green siliques. {ECO:0000269|PubMed:11673616}. locus:2031750;,locus:2117189; AT1G32170,AT4G18990 Xyloglucan endotransglucosylase hydrolase protein Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207),Os02g0696500 protein (Xyloglucan endo-1,4-beta-D-glucanase-like) Q6YUP5,Q6YUP4,Q6Z2L4 Q6YUP5_ORYSJ,Q6YUP4_ORYSJ,Q6Z2L4_ORYSJ B1053A04.26-1 Os02g0696500 OsJ_08020 OSNPB_020696500,B1053A04.26-2 Os02g0696500 OSNPB_020696500,Os02g0127800 OSNPB_020127800 P0482F12.29 P0576F08.2 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DXV5 CTL1,CTL2 Q9MA41,Q9LSP9,A0A1I9LSA0 CTL1_ARATH,CTL2_ARATH,A0A1I9LSA0_ARATH Chitinase-like protein 1 (AtCTL1) (Protein ANION ALTERED ROOT MORPHOLOGY) (Protein ECTOPIC DEPOSITION OF LIGNIN IN PITH 1) (Protein ECTOPIC ROOT HAIR 2) (Protein POM-POM1) (Protein SENSITIVE TO HOT TEMPERATURES 2),Chitinase-like protein 2 (AtCTL2),Chitinase-like protein DISRUPTION PHENOTYPE: Abnormal root expansion with ectopic root-hairs, reduced growth, excess lateral stems and smaller leaves. Loss of regulation of the extent of root epidermal and cortex cell expansion. Ectopic deposition of lignin and aberrant shapes of cells with incomplete cell walls in the pith of inflorescence stems. Exaggerated hook curvature, reduced length and increased diameter of hypocotyls in dark-grown seedlings, and reduced root length and increased number of root hairs in light-grown seedlings. Increased ethylene production. Exhibit also thermotolerance defect. Lacks the lefthanded root epidermal cell file rotation (CFR) and enhanced root skewing in response to low doses of propyzamide. Aberrant reduced tolerance to salt and drought stresses, with accumulated of sodium ions. {ECO:0000269|PubMed:10760305, ECO:0000269|PubMed:10806225, ECO:0000269|PubMed:11826306, ECO:0000269|PubMed:12805605, ECO:0000269|PubMed:15908600, ECO:0000269|PubMed:17156413, ECO:0000269|PubMed:7743935, ECO:0000269|PubMed:9165126}.,DISRUPTION PHENOTYPE: Ectopic accumulation of lignin in etiolated hypocotyls. {ECO:0000269|PubMed:20056293}. defect in thermotolerance,Callus-induced roots from the mutant displayed the mutant phenotype when they grew under restrictive conditions. All the mutants responded to a gravitropic stimulus in a manner similar to wild type although the change of the direction of growth was slower than wild type.,The greenhouse-grown mutant was slightly dwarfed.,When grown on soil the mutant exhibited reduced growth and smaller leaves.,exhibited a decrease in total extractives and a concomitant increase in total lignins relative to wild-type plants more H units relative to wild-type lignins in pom1 arabinose was more abundant in the insoluble residue from pom1,det3/pom1 double mutants were severely compromised with respect to plant growth and development. Many of the det3/pom1 double mutants died before bolting,The pom1/eli1 double mutant was compromised in growth and the rate of development was slow relative to the single mutants. The pom1/eli1 double mutants had very small rosettes and their leaves accumulated anthocyanins.,When grown on media containing 0.5% sucrose the mutant had reduced root length but no apparent radial cell expansion.,Partial reversion of the hypocotyl-elongation defect of pom1-2. Dwarf; Short roots; Long root hairs with increased density; Abnormal pith cell morphology; Short, thick hypocotyl and roots and exaggerated apical hook in the dark-Z. Ye-2002 FUNCTION: No chitinase activity. Essential for normal plant growth and development. Regulates cell expansion extent and differentiation at least in roots and hypocotyls. Prevents lignin accumulation in the pith. May modulate ethylene-mediated regulation during development. Probably required to establish thermotolerance acclimation. Plays a role for controlled anisotropic cell expansion in the regulation of waving during root gravitropism and thigmotropism. Involved in the root system architecture adaptation to multiple environmental conditions such as nitrate. Contributes to salt tolerance and possibly to drought by preventing the overaccumulation of sodium ions. {ECO:0000269|PubMed:10760305, ECO:0000269|PubMed:10806225, ECO:0000269|PubMed:11826306, ECO:0000269|PubMed:12805605, ECO:0000269|PubMed:15908600, ECO:0000269|PubMed:17156413, ECO:0000269|PubMed:20007445, ECO:0000269|PubMed:20056293, ECO:0000269|PubMed:7743935, ECO:0000269|PubMed:9165126}.,FUNCTION: No chitinase activity (By similarity). Required for proper cell wall biosynthesis in etiolated seedlings. Prevents lignin accumulation in hypocotyls. {ECO:0000250, ECO:0000269|PubMed:20056293}. 35579,36699,39566 Chitinase-like protein 1 (AtCTL1) (Protein ANION ALTERED ROOT MORPHOLOGY) (Protein ECTOPIC DEPOSITION OF LIGNIN IN PITH 1) (Protein ECTOPIC ROOT HAIR 2) (Protein POM-POM1) (Protein SENSITIVE TO HOT TEMPERATURES 2),Chitinase-like protein 2 (AtCTL2),Chitinase-like protein apoplast [GO:0048046]; Golgi apparatus [GO:0005794]; polysaccharide binding [GO:0030247]; cell wall macromolecule catabolic process [GO:0016998]; cellulose biosynthetic process [GO:0030244]; chitin catabolic process [GO:0006032]; ethylene-activated signaling pathway [GO:0009873]; multidimensional cell growth [GO:0009825]; regulation of salicylic acid metabolic process [GO:0010337]; response to cytokinin [GO:0009735]; response to heat [GO:0009408]; response to nitrate [GO:0010167]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; root epidermal cell differentiation [GO:0010053],extracellular region [GO:0005576]; carbohydrate metabolic process [GO:0005975]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032],chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; cell wall macromolecule catabolic process [GO:0016998]; chitin catabolic process [GO:0006032] TISSUE SPECIFICITY: Mostly expressed in seedlings shoots and roots, stems, and flowers, and, to a lower extent, in flowers, mature leaves and roots. {ECO:0000269|PubMed:11826306, ECO:0000269|PubMed:20007445, ECO:0000269|PubMed:20056293}.,TISSUE SPECIFICITY: Mostly expressed in stems, especially in xylem and interfascicular fibers. {ECO:0000269|PubMed:20056293}. locus:2198688; AT1G05850,AT3G16920 Chitinase-like protein Os08g0522500 protein (Putative chitinase) (cDNA clone:001-038-A09, full insert sequence) (cDNA clone:001-208-E01, full insert sequence) (cDNA clone:006-306-D01, full insert sequence) (cDNA clone:J033108M05, full insert sequence),Os09g0494200 protein,Os12g0257400 protein Q84QQ7,Q0J0L1,A0A0P0Y8Q3 Q84QQ7_ORYSJ,Q0J0L1_ORYSJ,A0A0P0Y8Q3_ORYSJ OJ1081_B12.117 Os08g0522500 OJ1186_G01.3 OsJ_27982 OSNPB_080522500,Os09g0494200 Os09g0494200 OsJ_29870 OSNPB_090494200,Os12g0257400 OSNPB_120257400 ENOG411DXV2 Q9C5J4,A0A1I9LSK9 Y3210_ARATH,A0A1I9LSK9_ARATH BTB/POZ domain-containing protein At3g22104,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 57385,49197 BTB/POZ domain-containing protein At3g22104,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:2095637; AT3G22104 BTB POZ domain-containing protein Os07g0546400 protein (Fragment) A0A0P0X7H7 A0A0P0X7H7_ORYSJ Os07g0546400 OSNPB_070546400 ENOG411DXV3 Q9FIY9,F4KBP8 Q9FIY9_ARATH,F4KBP8_ARATH Pectin lyase-like superfamily protein (Polygalacturonase-like protein),Pectin lyase-like superfamily protein ARA:AT5G44830-MONOMER; 36363,42602 Pectin lyase-like superfamily protein (Polygalacturonase-like protein),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2156314;,locus:2155292; AT5G44830,AT5G44840 polygalacturonase Os01g0172900 protein A0A0P0UYP2 A0A0P0UYP2_ORYSJ Os01g0172900 OSNPB_010172900 ENOG411DXV0 HSP70-10 Q9LDZ0,B3H683 HSP7J_ARATH,B3H683_ARATH Heat shock 70 kDa protein 10, mitochondrial (Heat shock protein 70-10) (AtHsp70-10) (Mitochondrial heat shock protein 70-2) (mtHsc70-2),Heat shock protein 70 (Hsp 70) family protein FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. ARA:GQT-1904-MONOMER; 72991,16211 Heat shock 70 kDa protein 10, mitochondrial (Heat shock protein 70-10) (AtHsp70-10) (Mitochondrial heat shock protein 70-2) (mtHsc70-2),Heat shock protein 70 (Hsp 70) family protein cell wall [GO:0005618]; chloroplast [GO:0009507]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to salt stress [GO:0009651]; response to virus [GO:0009615] DEVELOPMENTAL STAGE: Up-regulated during seed maturation. {ECO:0000269|PubMed:11402207}. locus:2144801;,locus:4515103479; AT5G09590,AT4G32208 Heat shock 70 kDa protein Os02g0774300 protein (Putative dnaK-type molecular chaperone),70 kDa heat shock protein (Heat shock 70 kDa protein, mitochondrial, putative, expressed) (Os03g0113700 protein) (cDNA clone:J033148E17, full insert sequence),Os02g0774300 protein (Fragment) Q6Z7L1,Q10SR3,A0A0P0VQ65 Q6Z7L1_ORYSJ,Q10SR3_ORYSJ,A0A0P0VQ65_ORYSJ Os02g0774300 Os02g0774300 OJ1448_G06.10 OsJ_08563 OSNPB_020774300,Os03g0113700 LOC_Os03g02260 Os03g0113700 OsJ_09152 OSNPB_030113700,Os02g0774300 OSNPB_020774300 ENOG411DXV8 MYB105,MYB117,MYB89 Q9SEZ4,Q9LQX5,Q9SPG4,A0A1P8APT7 MY105_ARATH,MY117_ARATH,Q9SPG4_ARATH,A0A1P8APT7_ARATH Transcription factor MYB105 (MYB-domain transcription factor LOF2) (Myb-related protein 105) (AtMYB105) (Protein LATERAL ORGAN FUSION 2),Transcription factor MYB117 (MYB-domain transcription factor LOF1) (Myb-related protein 117) (AtMYB117) (Protein CONSTRICTED FRUIT) (Protein LATERAL ORGAN FUSION 1),Myb domain protein 89 (Putative transcription factor) (Transcription factor),Myb domain protein 105 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants lof1 and lof2 exhibit enhanced phenotypes relative to lof1. {ECO:0000269|PubMed:19542355}.,DISRUPTION PHENOTYPE: Defects in organ separation due to abnormal cell division and expansion during early boundary formation. Failure in accessory shoot meristem formation. {ECO:0000269|PubMed:19542355}. defects in organ separation as a result of abnormal cell division and expansion during early boundary formation Downward-pointing auxiliary inflorescence stems; Cauline leaves fused to inflorescences; Complete loss of accessory shoot formation-P. Springer-2009 FUNCTION: Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.,FUNCTION: Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}. 38440,41534,22676,40324 Transcription factor MYB105 (MYB-domain transcription factor LOF2) (Myb-related protein 105) (AtMYB105) (Protein LATERAL ORGAN FUSION 2),Transcription factor MYB117 (MYB-domain transcription factor LOF1) (Myb-related protein 117) (AtMYB117) (Protein CONSTRICTED FRUIT) (Protein LATERAL ORGAN FUSION 1),Myb domain protein 89 (Putative transcription factor) (Transcription factor),Myb domain protein 105 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; organ boundary specification between lateral organs and the meristem [GO:0010199]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}. locus:2007136;,locus:2200635;,locus:2164900; AT1G69560,AT1G26780,AT5G39700 myb domain protein Os08g0435700 protein A0A0P0XGE9 A0A0P0XGE9_ORYSJ Os08g0435700 OSNPB_080435700 ENOG411DXV9 Q9SCP4,Q9FKC3,A0A1I9LNX7,A0A1I9LNX8 PP279_ARATH,PP424_ARATH,A0A1I9LNX7_ARATH,A0A1I9LNX8_ARATH Pentatricopeptide repeat-containing protein At3g53170,Pentatricopeptide repeat-containing protein At5g48730, chloroplastic,LOW protein: PPR containing protein 50691,58291,56397,53143 Pentatricopeptide repeat-containing protein At3g53170,Pentatricopeptide repeat-containing protein At5g48730, chloroplastic,LOW protein: PPR containing protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2156539; AT3G53170,AT5G48730 Pentatricopeptide repeat-containing protein Os06g0172000 protein (Putative PPR2) (cDNA clone:J013158I18, full insert sequence),Os03g0115300 protein Q5SND3,A0A0P0VS67 Q5SND3_ORYSJ,A0A0P0VS67_ORYSJ Os06g0172000 OsJ_20289 OSJNBa0014B15.6 OSNPB_060172000,Os03g0115300 OSNPB_030115300 ENOG411EKVT A8MSD3,A0A1I9LMV8,A0A1I9LMV9,A0A1I9LMV6,F4J2Q5 A8MSD3_ARATH,A0A1I9LMV8_ARATH,A0A1I9LMV9_ARATH,A0A1I9LMV6_ARATH,F4J2Q5_ARATH Threonyl and alanyl tRNA synthetase second additional domain-containing protein 28019,27369,23453,31936,27677 Threonyl and alanyl tRNA synthetase second additional domain-containing protein alanine-tRNA ligase activity [GO:0004813]; ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]; alanyl-tRNA aminoacylation [GO:0006419],alanine-tRNA ligase activity [GO:0004813]; ATP binding [GO:0005524]; alanyl-tRNA aminoacylation [GO:0006419] locus:504955757; AT3G16565 tRNA synthetases class II (A) NA NA NA NA NA NA NA ENOG411E05J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lysine histidine OSJNBa0084K11.20 protein (Os04g0562100 protein) Q7XSP9 Q7XSP9_ORYSJ Os04g0562100 OsJ_15778 OSJNBa0084K11.20 OSNPB_040562100 ENOG411E05G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os11g0242500 protein (Protein kinase domain containing protein, expressed) (Protein kinase homolog F21B7.1-Arabidopsis thaliana) (cDNA clone:J023002H13, full insert sequence) Q53N86 Q53N86_ORYSJ Os11g0242500 LOC_Os11g13860 Os11g0242500 OSNPB_110242500 ENOG411E05Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain BTB/POZ domain containing protein, expressed (Os10g0425900 protein) (cDNA clone:002-126-G04, full insert sequence),Os10g0425700 protein (Fragment) Q7XEE0,A0A0P0XUA9 Q7XEE0_ORYSJ,A0A0P0XUA9_ORYSJ Os10g0425900 LOC_Os10g29050 Os10g0425900 OSNPB_100425900,Os10g0425700 OSNPB_100425700 ENOG411E05Z ATL21B,ATL20,ATL22,ATL21A,ATL21C P0CH02,Q9C7E9,Q9SKK8,P0CH01,P0CH03,F4K2W6,Q2V331,A0A1P8AZW2 AT21B_ARATH,ATL20_ARATH,ATL22_ARATH,AT21A_ARATH,AT21C_ARATH,F4K2W6_ARATH,Q2V331_ARATH,A0A1P8AZW2_ARATH Putative RING-H2 finger protein ATL21B (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL21B),RING-H2 finger protein ATL20 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL20),RING-H2 finger protein ATL22 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL22),Putative RING-H2 finger protein ATL21A (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL21A),Putative RING-H2 finger protein ATL21C (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL21C),RING/U-box superfamily protein PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 40919,33498,42390,41591,41121,36285,24911,38606 Putative RING-H2 finger protein ATL21B (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL21B),RING-H2 finger protein ATL20 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL20),RING-H2 finger protein ATL22 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL22),Putative RING-H2 finger protein ATL21A (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL21A),Putative RING-H2 finger protein ATL21C (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL21C),RING/U-box superfamily protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; polysaccharide binding [GO:0030247]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],polysaccharide binding [GO:0030247] locus:6530298193;,locus:2010489;,locus:2040085;,locus:504956082;,locus:6530298192;,locus:1009023482; AT2G46494,AT1G28040,AT2G25410,AT2G46495,AT2G46493,AT5G36001 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411DW4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin carboxyl-terminal hydrolase NA NA NA NA NA NA NA ENOG411DW4B Q9SEZ6,A8MRI6 RNH2A_ARATH,A8MRI6_ARATH Ribonuclease H2 subunit A (RNase H2 subunit A) (EC 3.1.26.4) (Ribonuclease HI large subunit) (RNase HI large subunit) (Ribonuclease HI subunit A),Ribonuclease (EC 3.1.26.-) FUNCTION: Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA:RNA duplexes (By similarity). {ECO:0000250}.,FUNCTION: Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. {ECO:0000256|RuleBase:RU003515}. 3.1.26.4,3.1.26.- 33078,30955 Ribonuclease H2 subunit A (RNase H2 subunit A) (EC 3.1.26.4) (Ribonuclease HI large subunit) (RNase HI large subunit) (Ribonuclease HI subunit A),Ribonuclease (EC 3.1.26.-) ribonuclease H2 complex [GO:0032299]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; DNA replication, removal of RNA primer [GO:0043137]; mismatch repair [GO:0006298],RNA binding [GO:0003723]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; transferase activity [GO:0016740] locus:2040189; AT2G25100 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By similarity) Ribonuclease (EC 3.1.26.-) Q53QG3 Q53QG3_ORYSJ LOC_Os11g05570 Os11g0153900 OsJ_33004 OSNPB_110153900 FUNCTION: Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. {ECO:0000256|RuleBase:RU003515}. ENOG411DW4A OXI1 Q9LSF1,Q9SV69 OXI1_ARATH,Q9SV69_ARATH Serine/threonine-protein kinase OXI1 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 2 member 1) (Protein OXIDATIVE SIGNAL-INDUCIBLE 1),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (At4g13000) (Uncharacterized protein AT4g13000) (Uncharacterized protein At4g13000/F25G13_90) DISRUPTION PHENOTYPE: Plants have enhanced susceptibility to virulent P.parasitica pathogen and reduced root hair length. {ECO:0000269|PubMed:14749726, ECO:0000269|PubMed:14985766}. Abnormal root hair development; Susceptible to virulent and avirulent bacteria-K. Denby-2009 FUNCTION: Involved in oxidative burst-mediated signaling. Required for basal resistance to P.parasitica infection and root hair growth. Partly required for the activation of MPK3 and MPK6 by hydrogen peroxide and cellulase elicitor. {ECO:0000269|PubMed:14985766}. 2.7.11.1 47560,42159 Serine/threonine-protein kinase OXI1 (EC 2.7.11.1) (AGC serine/threonine-protein kinase subfamily 2 member 1) (Protein OXIDATIVE SIGNAL-INDUCIBLE 1),AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (At4g13000) (Uncharacterized protein AT4g13000) (Uncharacterized protein At4g13000/F25G13_90) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein kinase binding [GO:0019901]; protein serine/threonine kinase activity [GO:0004674]; defense response [GO:0006952]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to oxidative stress [GO:0006979]; response to wounding [GO:0009611],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein autophosphorylation [GO:0046777] DEVELOPMENTAL STAGE: Highly expressed in fast-growing organs and dividing cells. TISSUE SPECIFICITY: Expressed in roots and root hair cells. {ECO:0000269|PubMed:14749726, ECO:0000269|PubMed:14985766}. locus:2090310;,locus:2123191; AT3G25250,AT4G13000 serine threonine-protein kinase OJ991113_30.20 protein (Os04g0488700 protein),Os04g0488700 protein Q7XUE9,A0A0P0WBQ8 Q7XUE9_ORYSJ,A0A0P0WBQ8_ORYSJ OJ991113_30.20 Os04g0488700 OSNPB_040488700,Os04g0488700 OSNPB_040488700 ENOG411DW4G MYB40 F4K6R6,A0A1P8BC92 F4K6R6_ARATH,A0A1P8BC92_ARATH Myb domain protein 40 31580,21135 Myb domain protein 40 DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700],DNA binding [GO:0003677] locus:2145648; AT5G14340 myb-related protein 315-like NA NA NA NA NA NA NA ENOG411DW4F Q9LX73,F4J7Z6,F4J7Z8,A0A1I9LTL2 UFL1_ARATH,F4J7Z6_ARATH,F4J7Z8_ARATH,A0A1I9LTL2_ARATH E3 UFM1-protein ligase 1 homolog (EC 6.3.2.-),E3 UFM1-protein ligase-like protein FUNCTION: E3 UFM1-protein ligase that mediates ufmylation of target proteins. {ECO:0000250}. 6.3.2.- 89073,90015,87372,86612 E3 UFM1-protein ligase 1 homolog (EC 6.3.2.-),E3 UFM1-protein ligase-like protein ligase activity [GO:0016874] locus:2075356; AT3G46220 E3 UFM1-protein ligase 1 homolog E3 UFM1-protein ligase 1 homolog (EC 2.3.2.-) (E3 UFM1-protein transferase 1 homolog) B9FM64 UFL1_ORYSJ Os05g0117600 LOC_Os05g02650 OsJ_16906 P0496H07.16 FUNCTION: E3 UFM1-protein ligase that mediates ufmylation of target proteins. {ECO:0000250}. ENOG411DW4E PFC1 O65090,A0A1P8ATE0,A0A1P8ATD9,A0A1P8ATE1,A0A1P8ATD7 DIM1C_ARATH,A0A1P8ATE0_ARATH,A0A1P8ATD9_ARATH,A0A1P8ATE1_ARATH,A0A1P8ATD7_ARATH Ribosomal RNA small subunit methyltransferase, chloroplastic (EC 2.1.1.-) (Dimethyladenosine transferase 1C) (Protein PALEFACE 1),rRNA adenine N(6)-methyltransferase (EC 2.1.1.-) DISRUPTION PHENOTYPE: No visible phenotype when grown at 22 degrees Celsius. Chilling-induced chlorosis and reduced growth at 5 degrees Celsius. {ECO:0000269|PubMed:9596631}. Chlorosis at low temperature-J. Browse-1998 FUNCTION: Required for methylation of the 3' adenosines in the small subunit of plastid rRNA. Essential for chloroplast biogenesis at low temperatures. {ECO:0000269|PubMed:9596631}. 2.1.1.- 38023,38160,29454,29591,27095 Ribosomal RNA small subunit methyltransferase, chloroplastic (EC 2.1.1.-) (Dimethyladenosine transferase 1C) (Protein PALEFACE 1),rRNA adenine N(6)-methyltransferase (EC 2.1.1.-) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity [GO:0016422]; RNA binding [GO:0003723]; rRNA (adenine-N6,N6-)-dimethyltransferase activity [GO:0000179]; response to cold [GO:0009409],RNA binding [GO:0003723]; rRNA (adenine-N6,N6-)-dimethyltransferase activity [GO:0000179] locus:2025437; AT1G01860 ribosomal RNA small subunit methyltransferase NA NA NA NA NA NA NA ENOG411DW4D SDR2a Q9SCU0 SDR2A_ARATH Short-chain dehydrogenase reductase 2a (AtSDR2a) (EC 1.1.1.-) ARA:AT3G51680-MONOMER; R-ATH-77111; 1.1.1.288; 1.1.1.- 32151 Short-chain dehydrogenase reductase 2a (AtSDR2a) (EC 1.1.1.-) oxidoreductase activity [GO:0016491] locus:2098287; AT3G51680 short-chain dehydrogenase reductase Os03g0299200 protein (Sex determination protein tasselseed 2, putative, expressed) (cDNA clone:J023119K22, full insert sequence),Os07g0691600 protein (Putative short-chain alcohol dehydrogenase) (cDNA clone:J023050B21, full insert sequence) Q10MQ8,Q84NR4 Q10MQ8_ORYSJ,Q84NR4_ORYSJ LOC_Os03g18740 Os03g0299200 OSNPB_030299200,P0034A04.106 Os07g0691600 OSNPB_070691600 ENOG411DW4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Plays a role in anterograde intraflagellar transport (IFT) the process by which cilia precursors are transported from the base of the cilium to the site of their incorporation at the tip NA NA NA NA NA NA NA ENOG411DW4J SMO1-3,SMO1-1,SMO1-2 F4JLZ6,Q8L7W5,Q1EC69 SMO13_ARATH,SMO11_ARATH,SMO12_ARATH Methylsterol monooxygenase 1-3 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1-3) (AtSMO1-3),Methylsterol monooxygenase 1-1 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1-1) (AtSMO1-1),Methylsterol monooxygenase 1-2 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1-2) (AtSMO1-2) FUNCTION: Non-heme iron oxygenase involved in sterols biosynthesis. 4,4-dimethyl-9-beta,19-cyclopropylsterols such as 24-methylenecycloartanol are the preferred substrates.,FUNCTION: Non-heme iron oxygenase involved in sterols biosynthesis. 4,4-dimethyl-9-beta,19-cyclopropylsterols such as 24-methylenecycloartanol are the preferred substrates. {ECO:0000269|PubMed:14653780}.,FUNCTION: Non-heme iron oxygenase involved in sterols biosynthesis. 4,4-dimethyl-9-beta,19-cyclopropylsterols such as 24-methylenecycloartanol are the preferred substratess. MISCELLANEOUS: Requires a membrane-bound cytochrome b5 as an obligatory electron carrier from NAD(P)H to SMO. {ECO:0000250}. ARA:AT4G12110-MONOMER;MetaCyc:AT4G12110-MONOMER;,ARA:AT4G22756-MONOMER; 1.14.13.72; 1.14.13.72 34284,34647,34989 Methylsterol monooxygenase 1-3 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1-3) (AtSMO1-3),Methylsterol monooxygenase 1-1 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1-1) (AtSMO1-1),Methylsterol monooxygenase 1-2 (EC 1.14.13.72) (Sterol 4-alpha-methyl-oxidase 1-2) (AtSMO1-2) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; C-4 methylsterol oxidase activity [GO:0000254]; iron ion binding [GO:0005506]; 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation [GO:0080064]; sterol biosynthetic process [GO:0016126],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; C-4 methylsterol oxidase activity [GO:0000254]; iron ion binding [GO:0005506]; 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation [GO:0080064]; sterol biosynthetic process [GO:0016126] locus:505006514;,locus:2118121;,locus:505006515; AT4G22755,AT4G12110,AT4G22756 methylsterol Os03g0108500 protein (Sterol desaturase family protein, expressed) (cDNA clone:002-150-A02, full insert sequence),Os10g0545200 protein (Putative C-4 sterol methyl oxidase) (Sterol desaturase family protein, expressed) (cDNA clone:J013001I03, full insert sequence) (cDNA clone:J033097K13, full insert sequence) Q10SX1,Q9AV39 Q10SX1_ORYSJ,Q9AV39_ORYSJ LOC_Os03g01820 Os03g0108500 OsJ_09112 OSNPB_030108500,Os10g0545200 LOC_Os10g39810 Os10g0545200 OSJNBa0001O14.3 OSNPB_100545200 ENOG411DW4I CLPP5 Q9S834 CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP5) (nClpP5) (nClpP1) DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:19525416}. Embryo defective; Globular-K. van Wijk-2009 FUNCTION: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). {ECO:0000250}. 3.4.21.92 32356 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP5) (nClpP5) (nClpP1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplastic endopeptidase Clp complex [GO:0009840]; plastid stroma [GO:0009532]; thylakoid [GO:0009579]; serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Mostly expressed in leaves. Also detected in stems, and to a lower extent, in roots (at protein level). {ECO:0000269|PubMed:11982939}. locus:2196120; AT1G02560 ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) Q50LH5 Q50LH5_ORYSJ Os03g0308100 LOC_Os03g19510 Os03g0308100 OSNPB_030308100 ENOG411DW4H NAC043 Q84WP6 NAC43_ARATH NAC domain-containing protein 43 (ANAC043) (Protein EMBRYO DEFECTIVE 2301) (Protein NAC SECONDARY WALL THICKENING PROMOTING FACTOR 1) Plants are indehiscent because siliques lack secondary walls except in vascular vessels.,Under short-day conditions the nst1-1 nst3-1 plants were no longer able to remain upright when they reached >15cmin height neither lignin nor cellulose which constitute secondary walls was produced in inflorescence stems of nst1-1 nst3-1 plants,The ectopic formation of secondary walls normally seen in the ful mutant is suppressed in the double mutant.,Secondary walls of valve margins do not form and those of the enB layer form late. Lack of secondary walls mean causes siliques to be indehiscent. Indehiscent siliques; Loss of secondary walls at valve margins-M. Ohme-Takagi-2008 FUNCTION: Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. 40781 NAC domain-containing protein 43 (ANAC043) (Protein EMBRYO DEFECTIVE 2301) (Protein NAC SECONDARY WALL THICKENING PROMOTING FACTOR 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; fruit dehiscence [GO:0010047]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. locus:2044360; AT2G46770 NAC domain-containing protein Os06g0131700 protein (Putative NAM (No apical meristem) protein) (Putative OsNAC7 protein),Os08g0115800 protein (Putative OsNAC7 protein),Os06g0131700 protein Q9SNM6,Q6YXS5,Q0DEW2 Q9SNM6_ORYSJ,Q6YXS5_ORYSJ,Q0DEW2_ORYSJ P0493C11.25-1 134P10.2 Os06g0131700 P0679C08.7-1 OSNPB_060131700,Os08g0115800 OSNPB_080115800 P0427G12.36 P0470F10.1,Os06g0131700 Os06g0131700 OSNPB_060131700 ENOG411DW4N F17A17.24 Q9SFC4,O64884,F4IU48 Q9SFC4_ARATH,O64884_ARATH,F4IU48_ARATH O-fucosyltransferase family protein (Putative auxin-independent growth promoter),Axi 1 protein-like protein (O-fucosyltransferase family protein) (Similar to axi 1 protein from Nicotiana tabacum),O-fucosyltransferase family protein FUNCTION: May play a role in the biosynthesis of matrix polysaccharides and contribute to the biomechanics and development of the plant cell wall. {ECO:0000269|Ref.11}. 65364,64585,47841 O-fucosyltransferase family protein (Putative auxin-independent growth promoter),Axi 1 protein-like protein (O-fucosyltransferase family protein) (Similar to axi 1 protein from Nicotiana tabacum),O-fucosyltransferase family protein chloroplast [GO:0009507]; cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2077482;,locus:2050564; AT3G07900,AT2G44500 DUF246 domain-containing protein NA NA NA NA NA NA NA ENOG411DW4M O22958 O22958_ARATH ATP synthase F1 complex assembly factor (At2g34050/T14G11.17) (Expressed protein) 28378 ATP synthase F1 complex assembly factor (At2g34050/T14G11.17) (Expressed protein) mitochondrion [GO:0005739]; mitochondrial proton-transporting ATP synthase complex assembly [GO:0033615] locus:2055491; AT2G34050 ATP synthase mitochondrial F1 complex assembly factor Os02g0312700 protein (cDNA clone:J033113H15, full insert sequence),Os02g0312700 protein (cDNA clone:J023150C21, full insert sequence) Q6Z6S8,Q0E1S0 Q6Z6S8_ORYSJ,Q0E1S0_ORYSJ P0705A04.3-1 Os02g0312700 OsJ_06427 OSNPB_020312700,Os02g0312700 Os02g0312700 OSNPB_020312700 ENOG411DW4Q HAP2 F4JP36 HAP2_ARATH Protein HAPLESS 2 (GENERATIVE CELL SPECIFIC 1) DISRUPTION PHENOTYPE: Defective in pollen tube guidance. Prevents gamete interaction and fertilization, resulting in male sterility. {ECO:0000269|PubMed:16378100, ECO:0000269|PubMed:17079265}. Pollen tubes defective in ovule targeting. Hap2 pollen are defective in fertilization. Male gametophyte defective; Rare embryo defective (inferred)-D. Preuss-2006 FUNCTION: Required for male fertility (PubMed:17079265, PubMed:20333238). Plays a role in pollen tube guidance and successful gamete attachment (PubMed:17079265). Essential for the fusion of gametes during double fertilization, where one male gamete fuses with the egg to produce a zygote, and another male gamete fuses with the central cell to produce the endosperm (PubMed:17079265, PubMed:20333238, PubMed:21209845). Mediates the fusion of cell membranes (PubMed:28137780). Not required for pollen tube outgrowth (PubMed:17079265, PubMed:20333238). {ECO:0000269|PubMed:16378100, ECO:0000269|PubMed:17079265, ECO:0000269|PubMed:20333238, ECO:0000269|PubMed:21209845, ECO:0000269|PubMed:23180860, ECO:0000269|PubMed:28137780}. MISCELLANEOUS: HAP2/GCS1 family members mediate membrane fusion between gametes in a broad range of eukaryotes, ranging from algae and higher plants to protozoans and cnidaria, suggesting they are derived from an ancestral gamete fusogen. They function similar to viral fusogens, by inserting part of their extracellular domain into the lipid bilayer of an adjoining cell. {ECO:0000303|PubMed:20080406}. 80505 Protein HAPLESS 2 (GENERATIVE CELL SPECIFIC 1) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; double fertilization forming a zygote and endosperm [GO:0009567]; fusion of sperm to egg plasma membrane [GO:0007342]; plasma membrane fusion [GO:0045026]; pollen sperm cell differentiation [GO:0048235] DEVELOPMENTAL STAGE: Expressed during pollen development and tube growth. {ECO:0000269|PubMed:16378100}. TISSUE SPECIFICITY: Expressed only in mature pollen, in the two sperm cells. {ECO:0000269|PubMed:16378100, ECO:0000269|PubMed:17079265}. locus:2139772; AT4G11720 single fertilization Protein HAPLESS 2-B,Protein HAPLESS 2-A,Os09g0525700 protein (Fragment) B9G4M9,Q5W6B9,A0A0P0XQ39 HAP2B_ORYSJ,HAP2A_ORYSJ,A0A0P0XQ39_ORYSJ HAP2B Os09g0525700 LOC_Os09g35720 OJ1439_F07.5 OsJ_30063 OSJNBa0047P18.33,HAP2A Os05g0269500 LOC_Os05g18730 OsJ_17850 OSJNBa0037H03.12,Os09g0525700 OSNPB_090525700 FUNCTION: Required for male fertility. Plays a role in pollen tube guidance and successful gamete attachment. Essential for the fusion of gametes during double fertilization, where one male gamete fuses with the egg to produce a zygote, and another male gamete fuses with the central cell to produce the endosperm. Mediates the fusion of cell membranes. Not required for pollen tube outgrowth. {ECO:0000250|UniProtKB:F4JP36}.,FUNCTION: Required for male fertility. Plays a role in pollen tube guidance and successful gamete attachment. Essential for the fusion of gametes during double fertilization, where one male gamete fuses with the egg to produce a zygote, and another male gamete fuses with the central cell to produce the endosperm (PubMed:20333238). Mediates the fusion of cell membranes. Not required for pollen tube outgrowth (By similarity). {ECO:0000250|UniProtKB:F4JP36, ECO:0000269|PubMed:20333238}. MISCELLANEOUS: HAP2/GCS1 family members mediate membrane fusion between gametes in a broad range of eukaryotes, ranging from algae and higher plants to protozoans and cnidaria, suggesting they are derived from an ancestral gamete fusogen. They function similar to viral fusogens, by inserting part of their extracellular domain into the lipid bilayer of an adjoining cell. {ECO:0000303|PubMed:20080406}. ENOG411DW4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-box-binding factor Os07g0209800 protein A0A0P0X3I8 A0A0P0X3I8_ORYSJ Os07g0209800 OSNPB_070209800 ENOG411DW4T MYB7 Q42379 MYB7_ARATH Transcription factor MYB7 (Myb-related protein 7) (AtMYB7) (Myb-related protein Y49) (AtY49) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Increased levels of flavonols (PubMed:24319076). Decreased levels of anthocyanins (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. FUNCTION: Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. 31009 Transcription factor MYB7 (Myb-related protein 7) (AtMYB7) (Myb-related protein Y49) (AtY49) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of flavonol biosynthetic process [GO:1900384]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in anthers (PubMed:24319076, PubMed:25053018). Expressed in pollen grains and mature seeds (PubMed:25053018). Expressed in roots and vasculature of leaves (PubMed:24319076). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. locus:2059883; AT2G16720 Transcription factor NA NA NA NA NA NA NA ENOG411DW4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum NA NA NA NA NA NA NA ENOG411DW4Y Q9FNB2 Q9FNB2_ARATH AT5g13610/MSH12_7 (Gb|AAF67764.1) (Sporulation RMD1-like protein, putative (DUF155)) 46201 AT5g13610/MSH12_7 (Gb|AAF67764.1) (Sporulation RMD1-like protein, putative (DUF155)) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; abscisic acid-activated signaling pathway [GO:0009738]; mitochondria-nucleus signaling pathway [GO:0031930]; mitochondrion organization [GO:0007005] locus:2173214; AT5G13610 Uncharacterised ACR YagE family COG1723 Os07g0694800 protein Q6Z3Y1 Q6Z3Y1_ORYSJ Os07g0694800 OSNPB_070694800 P0627E10.15 ENOG411DW4X ATR1,ATR2 Q9SB48,Q9SUM3,A0A1P8B3S1,F4JQY4 NCPR1_ARATH,NCPR2_ARATH,A0A1P8B3S1_ARATH,F4JQY4_ARATH NADPH--cytochrome P450 reductase 1 (CPR 1) (P450R 1) (EC 1.6.2.4),NADPH--cytochrome P450 reductase 2 (CPR 2) (P450R 2) (EC 1.6.2.4),NADPH--cytochrome P450 reductase (CPR) (p450R) (EC 1.6.2.4) FUNCTION: This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. {ECO:0000255|HAMAP-Rule:MF_03212, ECO:0000269|PubMed:10208644, ECO:0000269|PubMed:9235908, ECO:0000269|PubMed:9449848, ECO:0000269|PubMed:9880378, ECO:0000269|PubMed:9990323}.,FUNCTION: This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. {ECO:0000255|HAMAP-Rule:MF_03212, ECO:0000269|PubMed:10733884, ECO:0000269|PubMed:9235908, ECO:0000269|PubMed:9449848, ECO:0000269|PubMed:9880378, ECO:0000269|PubMed:9990323}.,FUNCTION: This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. {ECO:0000256|HAMAP-Rule:MF_03212}. ARA:AT4G24520-MONOMER;MetaCyc:MONOMER-2101; R-ATH-211897; 1.6.2.4 76766,78927,85989,76325 NADPH--cytochrome P450 reductase 1 (CPR 1) (P450R 1) (EC 1.6.2.4),NADPH--cytochrome P450 reductase 2 (CPR 2) (P450R 2) (EC 1.6.2.4),NADPH--cytochrome P450 reductase (CPR) (p450R) (EC 1.6.2.4) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; FMN binding [GO:0010181]; NADPH-hemoprotein reductase activity [GO:0003958]; phenylpropanoid metabolic process [GO:0009698]; response to abscisic acid [GO:0009737]; response to oxidative stress [GO:0006979],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; FMN binding [GO:0010181]; NADPH-hemoprotein reductase activity [GO:0003958]; phenylpropanoid metabolic process [GO:0009698],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; flavin adenine dinucleotide binding [GO:0050660]; FMN binding [GO:0010181]; NADP binding [GO:0050661]; NADPH-hemoprotein reductase activity [GO:0003958] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:9449848}. locus:2121894;,locus:2128951; AT4G24520,AT4G30210 This enzyme is required for electron transfer from NADP to cytochrome P450 (By similarity) NADPH--cytochrome P450 reductase (CPR) (P450R) (EC 1.6.2.4),Os08g0243500 protein (Fragment) Q7X7K8,Q0J705,Q653S9,A0A0P0XEB9 Q7X7K8_ORYSJ,Q0J705_ORYSJ,Q653S9_ORYSJ,A0A0P0XEB9_ORYSJ Os04g0653400 OSJNBa0060D06.20 OSJNBb0022F16.2 OSNPB_040653400,Os08g0243500 Os08g0243500 OSNPB_080243500,Os09g0558900 Os09g0558900 OJ1065_E04.12 OSNPB_090558900,Os08g0243500 OSNPB_080243500 ENOG411DW42 F4JQT1 F4JQT1_ARATH Receptor Serine/Threonine kinase-like protein 77435 Receptor Serine/Threonine kinase-like protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2141862; AT4G18250 receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DW40 F4I4G0,F4I4G1 F4I4G0_ARATH,F4I4G1_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein 102777,104028 Tetratricopeptide repeat (TPR)-like superfamily protein zinc ion binding [GO:0008270],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2032840; AT1G16480 pentatricopeptide Os11g0680200 protein A0A0P0Y5E2 A0A0P0Y5E2_ORYSJ Os11g0680200 OSNPB_110680200 ENOG411DW46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyltransferase domain NA NA NA NA NA NA NA ENOG411DW45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Hydroxyproline-rich glycoprotein family protein Os02g0510300 protein (cDNA clone:J013123J20, full insert sequence) Q6K2E7 Q6K2E7_ORYSJ Os02g0510300 OSJNBa0001A11.1 OSJNBa0052M16.39 OSNPB_020510300 ENOG411DW49 MAH20.14 Q9FNN0 Q9FNN0_ARATH Calcium-binding EF hand family protein (Uncharacterized protein At5g08580) (Uncharacterized protein MAH20.14) 45845 Calcium-binding EF hand family protein (Uncharacterized protein At5g08580) (Uncharacterized protein MAH20.14) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509] locus:2159587; AT5G08580 EF hand family protein Os01g0572700 protein,Os02g0221800 protein A0A0P0V4B4,A0A0P0VGM2 A0A0P0V4B4_ORYSJ,A0A0P0VGM2_ORYSJ Os01g0572700 OSNPB_010572700,Os02g0221800 OSNPB_020221800 ENOG411DW48 F26K9_160 Q9LZJ2,A0A1I9LR66,F4HWR0 Q9LZJ2_ARATH,A0A1I9LR66_ARATH,F4HWR0_ARATH AT3g62730/F26K9_160 (Desiccation-like protein) (Uncharacterized protein F26K9_160),Desiccation-like protein 34732,24859,34294 AT3g62730/F26K9_160 (Desiccation-like protein) (Uncharacterized protein F26K9_160),Desiccation-like protein locus:2081645;,locus:2202593; AT3G62730,AT1G47980 desiccation-related protein PCC13-62-like Os04g0404400 protein (Fragment) A0A0P0WA63 A0A0P0WA63_ORYSJ Os04g0404400 OSNPB_040404400 ENOG411EKV2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family Os04g0591800 protein,Os03g0199900 protein,Os04g0582500 protein A3AWY1,B9F5R1,A0A0P0WDV5 A3AWY1_ORYSJ,B9F5R1_ORYSJ,A0A0P0WDV5_ORYSJ Os04g0591800 OsJ_15978 OSNPB_040591800,Os03g0199900 OsJ_09797 OSNPB_030199900,Os04g0582500 OSNPB_040582500 ENOG411EIKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKV7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os12g0211100 protein (Fragment),Os01g0698850 protein A0A0P0Y850,A0A0N7KDK5 A0A0P0Y850_ORYSJ,A0A0N7KDK5_ORYSJ Os12g0211100 OSNPB_120211100,Os01g0698850 OSNPB_010698850 ENOG411EIKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0197900 protein,Os08g0197800 protein (Fragment) A0A0P0XCW4,A0A0P0XCL6 A0A0P0XCW4_ORYSJ,A0A0P0XCL6_ORYSJ Os08g0197900 OSNPB_080197900,Os08g0197800 OSNPB_080197800 ENOG411EJW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Metaxin 3 NA NA NA NA NA NA NA ENOG411EJWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E85Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0289000 protein (cDNA clone:002-102-B06, full insert sequence),Os08g0289000 protein (cDNA clone:002-101-A03, full insert sequence) Q6Z2C4,Q6Z2C3 Q6Z2C4_ORYSJ,Q6Z2C3_ORYSJ OJ1034_C08.13-1 B1114E07.25-1 Os08g0289000 OSNPB_080289000,OJ1034_C08.13-2 B1114E07.25-2 Os08g0289000 OSNPB_080289000 ENOG411E64Q SP1L1 B3H4F1 SP1L1_ARATH Protein SPIRAL1-like 1 FUNCTION: Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth. {ECO:0000250}. 11268 Protein SPIRAL1-like 1 microtubule [GO:0005874] TISSUE SPECIFICITY: Detected in pollen of mature flowers. {ECO:0000269|PubMed:16478750}. locus:4515102592; AT1G26355 Inherit from NOG: in maintaining the cortical microtubules organization essential for anisotropic cell growth NA NA NA NA NA NA NA ENOG411E85N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0138900 protein (cDNA clone:002-133-H11, full insert sequence) Q6ZKI4 Q6ZKI4_ORYSJ Os08g0138900 Os08g0138900 OJ1119_D01.15 OSNPB_080138900 ENOG411E854 MWF20.21 A0A1P8BGR8,Q0WVL0,F4K613 A0A1P8BGR8_ARATH,Q0WVL0_ARATH,F4K613_ARATH Myb-like protein X,Myb-like protein X (Uncharacterized protein At5g48610) 55190,41157,20551 Myb-like protein X,Myb-like protein X (Uncharacterized protein At5g48610) locus:2152531;,locus:2176506; AT5G48610,AT5G43490 NA NA NA NA NA NA NA NA ENOG411E850 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRPZ Q9SQU9,Q9SQV0 Q9SQU9_ARATH,Q9SQV0_ARATH F24P17.4 protein (GNS1/SUR4 membrane protein family) (Uncharacterized protein At3g06460),F24P17.3 protein (GNS1/SUR4 membrane protein family) R-ATH-2046105;R-ATH-2046106;R-ATH-75876; 33999,31313 F24P17.4 protein (GNS1/SUR4 membrane protein family) (Uncharacterized protein At3g06460),F24P17.3 protein (GNS1/SUR4 membrane protein family) integral component of endoplasmic reticulum membrane [GO:0030176]; fatty acid elongase activity [GO:0009922]; fatty acid elongation, monounsaturated fatty acid [GO:0034625]; fatty acid elongation, polyunsaturated fatty acid [GO:0034626]; fatty acid elongation, saturated fatty acid [GO:0019367]; sphingolipid biosynthetic process [GO:0030148]; very long-chain fatty acid biosynthetic process [GO:0042761] locus:2081126;,locus:2081116; AT3G06460,AT3G06470 GNS1 SUR4 membrane family protein GNS1/SUR4 family (GNS1/SUR4 family protein, expressed) (Os03g0701500 protein) (Putative GNS1/SUR4 protein) (cDNA clone:001-109-H06, full insert sequence) Q53RC1 Q53RC1_ORYSJ LOC_Os03g49480 Os03g0701500 OSNPB_030701500 ENOG411DRPX P0C894 PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 Embryo defective; Cotyledon-D. Meinke-2008 86085 Putative pentatricopeptide repeat-containing protein At2g02150 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2051693; AT2G02150 Pentatricopeptide repeat-containing protein Os06g0565000 protein A0A0P0WXT3 A0A0P0WXT3_ORYSJ Os06g0565000 OSNPB_060565000 ENOG411DRPY BGAL7,BGAL15 Q9SCV5,Q9C6W4,Q8S8A7,A0A1P8BAR3,A0A1P8AZH3 BGAL7_ARATH,BGA15_ARATH,Q8S8A7_ARATH,A0A1P8BAR3_ARATH,A0A1P8AZH3_ARATH Beta-galactosidase 7 (Lactase 7) (EC 3.2.1.23),Beta-galactosidase 15 (Lactase 15) (EC 3.2.1.23),Glycosyl hydrolase family 35 protein (Predicted protein),Beta-galactosidase 7,Beta-galactosidase-like protein (Fragment) ARA:AT5G20710-MONOMER;,ARA:AT1G31740-MONOMER;,ARA:AT2G04060-MONOMER; 3.2.1.23 92712,86342,52851,69244,18312 Beta-galactosidase 7 (Lactase 7) (EC 3.2.1.23),Beta-galactosidase 15 (Lactase 15) (EC 3.2.1.23),Glycosyl hydrolase family 35 protein (Predicted protein),Beta-galactosidase 7,Beta-galactosidase-like protein (Fragment) apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate binding [GO:0030246]; carbohydrate metabolic process [GO:0005975],cell wall [GO:0005618]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]; beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975],carbohydrate binding [GO:0030246]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:17466346}.,TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots and siliques. {ECO:0000269|PubMed:16267099}. locus:2180439;,locus:2050235; AT5G20710,AT1G31740,AT2G04060 beta-galactosidase Putative beta-galactosidase 10 (Lactase 10) (EC 3.2.1.23),Beta-galactosidase 13 (Lactase 13) (EC 3.2.1.23),Beta-galactosidase 14 (Lactase 14) (EC 3.2.1.23),Beta-galactosidase 1 (Lactase 1) (EC 3.2.1.23),Beta-galactosidase (EC 3.2.1.23),Os06g0628500 protein Q67VU7,Q7G3T8,Q7XFK2,Q8RUV9,B9G847,A0A0P0WZB7 BGA10_ORYSJ,BGA13_ORYSJ,BGA14_ORYSJ,BGAL1_ORYSJ,B9G847_ORYSJ,A0A0P0WZB7_ORYSJ Os06g0628500 LOC_Os06g42310 OSJNBa0023I22.22 P0530H05.37,Os10g0330600 LOC_Os10g18400 OsJ_029894 OSJNAb0008A05.15 OSJNBb0008A05.25,Os10g0340600 LOC_Os10g19960 OsJ_029934 OSJNBa0050M22.9,Os01g0533400 LOC_Os01g34920 OJ1029_F04.5 OJ1619_F12.26,Os10g0340600 OsJ_31141 OSNPB_100340600,Os06g0628500 OSNPB_060628500 ENOG411DRPR Q94LA9,Q94JT5,Q93V74 Q94LA9_ARATH,Q94JT5_ARATH,Q93V74_ARATH At1g44542 (Cyclase family protein) (Uncharacterized protein At1g44542) (Uncharacterized protein T18F15.4),AT4g35220/F23E12_220 (Cyclase family protein),AT4g34180/F28A23_60 (Cyclase family protein) FUNCTION: May function redundantly with CYCLASE1 for normal plant growth, development and viability. {ECO:0000305|PubMed:25862728}.,FUNCTION: Acts as a negative regulator of fumonisin B1- and pathogen-induced programmed cell death (PCD), and regulates pathogen-induced symptom development (PubMed:25862728). May function redundantly with CYCLASE2 for normal plant growth, development and viability (Probable). {ECO:0000269|PubMed:25862728, ECO:0000305|PubMed:25862728}. 30636,29988,28385 At1g44542 (Cyclase family protein) (Uncharacterized protein At1g44542) (Uncharacterized protein T18F15.4),AT4g35220/F23E12_220 (Cyclase family protein),AT4g34180/F28A23_60 (Cyclase family protein) arylformamidase activity [GO:0004061]; tryptophan catabolic process to kynurenine [GO:0019441],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; arylformamidase activity [GO:0004061]; tryptophan catabolic process to kynurenine [GO:0019441],cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; arylformamidase activity [GO:0004061]; negative regulation of programmed cell death [GO:0043069]; response to salt stress [GO:0009651]; tryptophan catabolic process to kynurenine [GO:0019441] locus:2823650;,locus:2122053;,locus:2124231; AT1G44542,AT4G35220,AT4G34180 Cyclase family Cyclase-like protein 4 (OsCYL4),Cyclase-like protein 3 (OsCYL3) Q6YX89,Q0J6H8 CYL4_ORYSJ,CYL3_ORYSJ CYL4 Os09g0110300 LOC_Os09g02270 OsJ_28368 P0646B04.11,CYL3 Os08g0319900 LOC_Os08g23100 OJ1136_D12.114 P0465H09.131 FUNCTION: May be involved in the control of plant responses to environmental stresses. {ECO:0000305|PubMed:25974367}.,FUNCTION: May be involved in response to stresses. {ECO:0000250|UniProtKB:Q6YX89}. MISCELLANEOUS: Plants over-expressing CYL4 exhibit reduced tolerance to cold, salt and drought stresses. {ECO:0000269|PubMed:25974367}. ENOG411DRPS Q9LZ71 Q9LZ71_ARATH AT5g04550/T32M21_140 (Type-1 restriction enzyme mjaxp r protein (DUF668)) (Uncharacterized protein At5g04550) (Uncharacterized protein At5g04550; T32M21_140) (Uncharacterized protein T32M21_140) 67264 AT5g04550/T32M21_140 (Type-1 restriction enzyme mjaxp r protein (DUF668)) (Uncharacterized protein At5g04550) (Uncharacterized protein At5g04550; T32M21_140) (Uncharacterized protein T32M21_140) locus:2184417; AT5G04550 Protein of unknown function (DUF668) Os11g0238400 protein (Fragment),Os12g0146500 protein (Fragment) C7J912,A0A0P0Y709 C7J912_ORYSJ,A0A0P0Y709_ORYSJ Os11g0238400 OSNPB_110238400,Os12g0146500 OSNPB_120146500 ENOG411DRPP O04086 Y1105_ARATH Probable receptor-like protein kinase At1g11050 (EC 2.7.11.1) 2.7.11.1 68521 Probable receptor-like protein kinase At1g11050 (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2197414; AT1G11050 receptor-like protein kinase Os05g0423500 protein (Unknow protein) (cDNA clone:J013049L02, full insert sequence) Q60EP3 Q60EP3_ORYSJ Os05g0423500 OJ1212_B02.6 OSNPB_050423500 ENOG411DRPQ APO2,APO1 Q8W4A5,Q9XIR4,F4I896 APO2_ARATH,APO1_ARATH,F4I896_ARATH APO protein 2, chloroplastic (Accumulation of photosystem I protein 2) (Protein EMBRYO DEFECTIVE 1629),APO protein 1, chloroplastic (Accumulation of photosystem I protein 1) (Protein ACCUMULATION OF PHOTOSYSTEM ONE 1),APO RNA-binding protein (DUF794) DISRUPTION PHENOTYPE: Plants fail to accumulate significant amounts of the outer antenna subunits of PSI and PSII and to form grana stacks. 2Fe-2S cluster-containing complexes appear to be unaffected. {ECO:0000269|PubMed:15494558}. Embryo defective; Globular-D. Meinke-2002 FUNCTION: May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. {ECO:0000250}.,FUNCTION: Involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. May participate in 4Fe-4S cofactor incorporation into psaA and/or psaB during translation. {ECO:0000269|PubMed:15494558}. 49938,49627,52358 APO protein 2, chloroplastic (Accumulation of photosystem I protein 2) (Protein EMBRYO DEFECTIVE 1629),APO protein 1, chloroplastic (Accumulation of photosystem I protein 1) (Protein ACCUMULATION OF PHOTOSYSTEM ONE 1),APO RNA-binding protein (DUF794) chloroplast [GO:0009507]; RNA binding [GO:0003723],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast organization [GO:0009658]; Group II intron splicing [GO:0000373]; photosynthesis [GO:0015979]; regulation of gene expression [GO:0010468] TISSUE SPECIFICITY: Expressed at low level. Expressed at higher level in leaves. Expressed at lower level in roots, stems, siliques and flowers. {ECO:0000269|PubMed:15494558}. locus:2174438;,locus:2010906; AT5G57930,AT1G64810 APO protein Os04g0615500 protein,Os02g0732900 protein B9FCH6,Q6Z2J6 B9FCH6_ORYSJ,Q6Z2J6_ORYSJ Os04g0615500 OsJ_16150 OSNPB_040615500,Os02g0732900 OsJ_08278 OSNPB_020732900 P0643A10.28 ENOG411DRPV O64685 O64685_ARATH Mitochondrial transcription termination factor family protein (Uncharacterized protein At2g34620) 34253 Mitochondrial transcription termination factor family protein (Uncharacterized protein At2g34620) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2062328; AT2G34620 MTERF domain containing protein Os03g0785200 protein Q0DMZ3 Q0DMZ3_ORYSJ Os03g0785200 OSNPB_030785200 ENOG411DRPW F8H,IRX7 Q6NMM8,Q9ZUV3,A0A1P8B9M3 F8H_ARATH,IRX7_ARATH,A0A1P8B9M3_ARATH Probable glucuronoxylan glucuronosyltransferase F8H (EC 2.4.1.-) (FRA8 homolog) (Protein FRAGILE FIBER 8 homolog),Probable glucuronoxylan glucuronosyltransferase IRX7 (EC 2.4.1.-) (Protein FRAGILE FIBER 8) (Protein IRREGULAR XYLEM 7),Glucuronoxylan glucuronosyltransferase, putative DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19224953}.,DISRUPTION PHENOTYPE: Dwarf phenotype. Strong reduction of secondary wall thickness, collapsed xylem vessels and reduced xylan content in cell wall. {ECO:0000269|PubMed:15980264, ECO:0000269|PubMed:16272433, ECO:0000269|PubMed:17944810}. Dramatic reduction in fiber wall thickness of a vessel member cells a decrease in stem strength and alteration of the overall growth were observed in mutated plants. Comparative analyses of cell wall polysaccharide fractions from fra8 and wild-type stems showed that the xylan and cellulose contents are drastically reduced in fra8 whereas xyloglucan and pectin are elevated. Inflorescence stems were shorter in height and rosette leaves smaller in size. Mild wilty phenotype was sometimes found in greenhouse conditions. Dwarf; Small leaves, flowers, and siliques; Sterile due to anther and pollen defects-C. Somerville-2007 FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the synthesis of the glycosyl sequence at the glucuronoxylan reducing end. {ECO:0000269|PubMed:19224953}.,FUNCTION: Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the synthesis of the glycosyl sequence at the glucuronoxylan reducing end. {ECO:0000269|PubMed:15980264, ECO:0000269|PubMed:16272433, ECO:0000269|PubMed:17938130, ECO:0000269|PubMed:17944810, ECO:0000269|PubMed:17991630}. ARA:AT5G22940-MONOMER;,ARA:AT2G28110-MONOMER; 2.4.1.- 53809,51694,57051 Probable glucuronoxylan glucuronosyltransferase F8H (EC 2.4.1.-) (FRA8 homolog) (Protein FRAGILE FIBER 8 homolog),Probable glucuronoxylan glucuronosyltransferase IRX7 (EC 2.4.1.-) (Protein FRAGILE FIBER 8) (Protein IRREGULAR XYLEM 7),Glucuronoxylan glucuronosyltransferase, putative Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; glucuronosyltransferase activity [GO:0015020]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] TISSUE SPECIFICITY: Expressed in xylem cells in stems and in roots. {ECO:0000269|PubMed:19224953}.,TISSUE SPECIFICITY: Expressed in developing interfascicular fibers and xylem cells in stems and developing secondary xylem in roots. {ECO:0000269|PubMed:16272433}. locus:2172676;,locus:2046163; AT5G22940,AT2G28110 exostosin family domain containing protein expressed Probable glucuronosyltransferase Os03g0107900 (EC 2.4.-.-) Q10SX7 GT31_ORYSJ Os03g0107900 LOC_Os03g01760 OsJ_09104 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411DRPT O65567 PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825, chloroplastic 103309 Pentatricopeptide repeat-containing protein At4g30825, chloroplastic chloroplast [GO:0009507]; holo TFIIH complex [GO:0005675]; DNA repair [GO:0006281]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:505006535; AT4G30825 Pentatricopeptide repeat-containing protein Os09g0423300 protein (Putative fertility restorer),Os09g0423300 protein (Fragment) Q69P44,A0A0P0XNA7,A0A0P0XMR3 Q69P44_ORYSJ,A0A0P0XNA7_ORYSJ,A0A0P0XMR3_ORYSJ Os09g0423300 OJ1740_D06.41 OsJ_29409 OSNPB_090423300 P0418B08.12,Os09g0423300 OSNPB_090423300 ENOG411DRPU SCL18 Q9ZWC5 SCL18_ARATH Scarecrow-like protein 18 (AtSCL18) (GRAS family protein 7) (AtGRAS-7) (Protein LATERAL SUPPRESSOR) DISRUPTION PHENOTYPE: Plants fail to initiate axillary meristems and do not form lateral shoots during vegetative development. {ECO:0000269|PubMed:12730136}. Almost complete suppression of secondary bolt formation from the axils of rosette leaves. Side shoot formation from the axils of cauline leaves of the primary bolt is not inhibited. The point of separation between lateral shoots and the main axis is often displaced acropetally. Branching from the first two or three leaves of secondary shoots is blocked. Petal abscission is delayed. Decreased branching-K. Theres-2003 FUNCTION: Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. 50009 Scarecrow-like protein 18 (AtSCL18) (GRAS family protein 7) (AtGRAS-7) (Protein LATERAL SUPPRESSOR) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; secondary shoot formation [GO:0010223]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. locus:2020487; AT1G55580 scarecrow-like protein 18 Protein MONOCULM 1 Q84MM9 MOC_ORYSJ MOC1 Os06g0610300 LOC_Os06g40780 P0490F09.19 FUNCTION: Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. ENOG411DRPJ Q6NL07 Q6NL07_ARATH Alpha/beta-Hydrolases superfamily protein (At1g13820) (Uncharacterized protein At1g13820) 37959 Alpha/beta-Hydrolases superfamily protein (At1g13820) (Uncharacterized protein At1g13820) hydrolase activity [GO:0016787] locus:2014774; AT1G13820 alpha/beta hydrolase fold Os07g0602100 protein (Fragment),Os07g0602050 protein A0A0P0X8P9,A0A0P0X895 A0A0P0X8P9_ORYSJ,A0A0P0X895_ORYSJ Os07g0602100 OSNPB_070602100,Os07g0602050 OSNPB_070602050 ENOG411DRPK HEME2 O22886 DCUP2_ARATH Uroporphyrinogen decarboxylase 2, chloroplastic (UPD2) (URO-D2) (EC 4.1.1.37) FUNCTION: Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. {ECO:0000250}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT2G40490-MONOMER; R-ATH-189451; 4.1.1.37 43580 Uroporphyrinogen decarboxylase 2, chloroplastic (UPD2) (URO-D2) (EC 4.1.1.37) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; uroporphyrinogen decarboxylase activity [GO:0004853]; chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782]; response to cytokinin [GO:0009735] locus:2061903; AT2G40490 Uroporphyrinogen decarboxylase Uroporphyrinogen decarboxylase 2, chloroplastic (UPD2) (URO-D2) (EC 4.1.1.37),Os03g0340001 protein Q10LR9,A0A0P0VXZ5 DCUP2_ORYSJ,A0A0P0VXZ5_ORYSJ Os03g0337600 LOC_Os03g21900 OsJ_10762,Os03g0340001 OSNPB_030340001 FUNCTION: Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. {ECO:0000250}. ENOG411DRPH Q9M391 ATX3H_ARATH Ataxin-3 homolog (EC 3.4.19.12) (MJD1a-like) (Machado-Joseph disease-like protein) FUNCTION: Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme (By similarity). {ECO:0000250}. ARA:AT3G54130-MONOMER; R-ATH-5689877; 3.4.19.12 30692 Ataxin-3 homolog (EC 3.4.19.12) (MJD1a-like) (Machado-Joseph disease-like protein) nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2080330; AT3G54130 Ataxin-3 homolog Putative ataxin-3 homolog (EC 3.4.19.12) Q8LQ36 ATX3_ORYSJ Os01g0851400 LOC_Os01g63250 P0529H11.31 FUNCTION: Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme (By similarity). {ECO:0000250}. ENOG411DRPI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os11g0673000 protein (Pentatricopeptide, putative) Q2QZT2 Q2QZT2_ORYSJ LOC_Os11g44930 Os11g0673000 OSNPB_110673000 ENOG411DRPN PIA1,PIA2 Q9FF09,Q9FNP4 PIA1_ARATH,PIA2_ARATH Phytochrome-interacting ankyrin-repeat protein 1 [Cleaved into: Protein ANK6-like, mitochondrial],Phytochrome-interacting ankyrin-repeat protein 2 [Cleaved into: Protein ANKYRIN REPEAT 6, mitochondrial] DISRUPTION PHENOTYPE: Normal hypocotyls length. {ECO:0000269|PubMed:21395597}.,DISRUPTION PHENOTYPE: Embryonic lethality in homozygous mutant. In heterozygous plants, impaired male-female gamete recognition when pollen of ank6 mutant is placed on ank6 female gamete. Defects in female gametophyte development at the one-nucleate stage (PubMed:21123745). Abnormal hypocotyls length. Reduced accumulation of anthocyanin in seedlings grown under far-red light, in response to high light and after sucrose treatment, associated with lower levels of the UDP-flavonoid-3'-glucosyl-transferase (A3G2XYLT/UF3GT), a major enzyme in the anthocyanin biosynthesis processes (PubMed:21395597). {ECO:0000269|PubMed:21123745, ECO:0000269|PubMed:21395597}. Ovule abortion; Female gametophyte defective; Early embryo defective (inferred)-S. Luan-2010 FUNCTION: Promotes anthocyanin accumulation through interaction with PHYA, especially in response to far-red light, high light and sucrose treatment, probably by triggering A3G2XYLT/UF3GT expression (PubMed:21395597, PubMed:27143545). Required for gametophytes development as well as male-female gamete recognition during fertilization, possibly by regulating mitochondrial gene expression (PubMed:21123745). Represses PHYA-mediated PIF3 phosphorylation (PubMed:27143545). {ECO:0000269|PubMed:21123745, ECO:0000269|PubMed:21395597, ECO:0000269|PubMed:27143545}. 19257,19207 Phytochrome-interacting ankyrin-repeat protein 1 [Cleaved into: Protein ANK6-like, mitochondrial],Phytochrome-interacting ankyrin-repeat protein 2 [Cleaved into: Protein ANKYRIN REPEAT 6, mitochondrial] cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; phytochrome binding [GO:0010313]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842],cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; phytochrome binding [GO:0010313]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; double fertilization forming a zygote and endosperm [GO:0009567]; embryo sac development [GO:0009553]; male-female gamete recognition during double fertilization [GO:0080173]; negative regulation of protein phosphorylation [GO:0001933]; positive regulation of anthocyanin biosynthetic process [GO:0031542]; response to far red light [GO:0010218]; response to high light intensity [GO:0009644]; response to sucrose [GO:0009744] DEVELOPMENTAL STAGE: Levels in leaves diminishes after transition from the vegetative to the reproductive phase. Accumulates strongly in developmental tissues (PubMed:21395597). Highly expressed in the male (e.g. pollen grains and pollen tubes) and female (e.g. synergids, egg cell and central cell) gametophytes before and during, but not after fertilization. In fertilized ovules, levels decrease rapidely to become undetectable at the stage before the first division of the endosperm (PubMed:21123745). {ECO:0000269|PubMed:21123745, ECO:0000269|PubMed:21395597}. TISSUE SPECIFICITY: Mostly expressed in flowers, cotyledons, leaves and siliques, and, to a lower extent, in roots and stems (PubMed:21123745, PubMed:21395597). Also detected at low levels in seedlings grown in continuous dark or light conditions (PubMed:21395597). Expressed in male and female gametophytes (PubMed:21123745). {ECO:0000269|PubMed:21123745, ECO:0000269|PubMed:21395597}. locus:2142783;,locus:2159456; AT5G07840,AT5G61230 Ankyrin repeat-containing protein Os02g0102600 protein (cDNA clone:001-020-E05, full insert sequence) (cDNA clone:J033118O11, full insert sequence) Q6YU79 Q6YU79_ORYSJ Os02g0102600 Os02g0102600 B1370C05.31 OJ1435_F07.21 OsJ_05001 OSNPB_020102600 ENOG411DRPM EMB1270 Q5G1S8 PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic (Protein EMBRYO DEFECTIVE 1270) Embryo defective; initiated cotyledons and continued growth and cell division beyond heart stage. Embryos elongated and developed a clear hypocotyl but featured dramatically stunted cotyledons. Domed shoot apex. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: May play a role in embryogenesis. {ECO:0000269|PubMed:15647901}. 162337 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic (Protein EMBRYO DEFECTIVE 1270) chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451] locus:2092712; AT3G18110 Pentatricopeptide repeat-containing protein Os06g0199100 protein (Putative PPR protein) Q69K58 Q69K58_ORYSJ Os06g0199100 Os06g0199100 B1172G12.22 OSNPB_060199100 ENOG411DRPB DNMT2 F4JWT7 F4JWT7_ARATH DNA methyltransferase-2 No visible phenotype. 43719 DNA methyltransferase-2 methyltransferase activity [GO:0008168] locus:2179469; AT5G25480 DNA methyltransferase Os01g0612000 protein A0A0P0V598 A0A0P0V598_ORYSJ Os01g0612000 OSNPB_010612000 ENOG411DRPC F18K10.25 Q9LPN6 Q9LPN6_ARATH Mannosyltransferase, putative (UDP-Glycosyltransferase superfamily protein) (Uncharacterized protein At3g10630) 55595 Mannosyltransferase, putative (UDP-Glycosyltransferase superfamily protein) (Uncharacterized protein At3g10630) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2075820; AT3G10630 Glycosyl transferase family 1 Glycosyl transferase family 1 protein-like (Os09g0296700 protein) (cDNA clone:J023044M15, full insert sequence) Q69TB4 Q69TB4_ORYSJ Os09g0296700 Os09g0296700 OsJ_28743 OSNPB_090296700 P0592C05.20 ENOG411DRPA Q9SKU1 CLC1_ARATH Clathrin light chain 1 FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. 37225 Clathrin light chain 1 clathrin coat of coated pit [GO:0030132]; clathrin coat of trans-Golgi network vesicle [GO:0030130]; clathrin vesicle coat [GO:0030125]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; clathrin heavy chain binding [GO:0032050]; structural molecule activity [GO:0005198]; clathrin-dependent endocytosis [GO:0072583]; intracellular protein transport [GO:0006886] locus:2051472; AT2G20760 Clathrin light chain Clathrin light chain 2 Q5Z402 CLC2_ORYSJ Os06g0731800 LOC_Os06g51510 B1206D04.26 OsJ_22754 FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. ENOG411DRPF EMB2261,PCMP-H42 Q5G1T1,Q9SVP7 PP272_ARATH,PP307_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic (Protein EMBRYO DEFECTIVE 2261),Pentatricopeptide repeat-containing protein At4g13650 Embryos consistently initiated cotyledons and continued growth and cell division beyond heart stage. Embryos consistently failed to elongate developing instead as v-shaped embryos with widestunted cotyledons and no hypocotyl. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: May play a role in embryogenesis. {ECO:0000269|PubMed:15647901}. 95496,119740 Pentatricopeptide repeat-containing protein At3g49170, chloroplastic (Protein EMBRYO DEFECTIVE 2261),Pentatricopeptide repeat-containing protein At4g13650 chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2082886;,locus:2119440; AT3G49170,AT4G13650 Pentatricopeptide repeat-containing protein Os05g0212100 protein (cDNA clone:J013105M16, full insert sequence) Q6L4I3 Q6L4I3_ORYSJ Os05g0212100 OsJ_17540 OSJNBa0074P11.10 OSNPB_050212100 ENOG411DRPG PFK7,PFK3,PFK6 Q9C5J7,Q94AA4,Q9M076 PFKA7_ARATH,PFKA3_ARATH,PFKA6_ARATH ATP-dependent 6-phosphofructokinase 7 (ATP-PFK 7) (Phosphofructokinase 7) (EC 2.7.1.11) (Phosphohexokinase 7),ATP-dependent 6-phosphofructokinase 3 (ATP-PFK 3) (Phosphofructokinase 3) (EC 2.7.1.11) (Phosphohexokinase 3),ATP-dependent 6-phosphofructokinase 6 (ATP-PFK 6) (Phosphofructokinase 6) (EC 2.7.1.11) (Phosphohexokinase 6) FUNCTION: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. {ECO:0000255|HAMAP-Rule:MF_03186}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4. {ECO:0000255|HAMAP-Rule:MF_03186}. ARA:AT5G56630-MONOMER;,ARA:AT4G26270-MONOMER;,ARA:AT4G32840-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.11; 2.7.1.11 53482,53666,50788 ATP-dependent 6-phosphofructokinase 7 (ATP-PFK 7) (Phosphofructokinase 7) (EC 2.7.1.11) (Phosphohexokinase 7),ATP-dependent 6-phosphofructokinase 3 (ATP-PFK 3) (Phosphofructokinase 3) (EC 2.7.1.11) (Phosphohexokinase 3),ATP-dependent 6-phosphofructokinase 6 (ATP-PFK 6) (Phosphofructokinase 6) (EC 2.7.1.11) (Phosphohexokinase 6) cytosol [GO:0005829]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; fructose 6-phosphate metabolic process [GO:0006002]; glycolytic process [GO:0006096],cytosol [GO:0005829]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; fructose 6-phosphate metabolic process [GO:0006002]; glycolytic process [GO:0006096]; root epidermal cell differentiation [GO:0010053] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:17485088}.,TISSUE SPECIFICITY: Mostly expressed in roots and flowers. {ECO:0000269|PubMed:17485088}. locus:2165046;,locus:2136849;,locus:2134108; AT5G56630,AT4G26270,AT4G32840 6-phosphofructokinase Os06g0151900 protein (Fragment) Q0DEH8 Q0DEH8_ORYSJ Os06g0151900 Os06g0151900 OSNPB_060151900 ENOG411DRPD HHT1,RWP1 Q94CD1,F4JWW6 HHT1_ARATH,F4JWW6_ARATH Omega-hydroxypalmitate O-feruloyl transferase (EC 2.3.1.188) (Omega-hydroxyacid hydroxycinnamoyltransferase) (Protein ALIPHATIC SUBERIN FERULOYL TRANSFERASE),HXXXD-type acyl-transferase family protein DISRUPTION PHENOTYPE: Elimination of suberin-associated ester-linked ferulate. Altered permeability and sensitivity of seeds and roots to salt stress. {ECO:0000269|PubMed:19759341, ECO:0000269|PubMed:19846769}. Abnormal aromatic suberin biosynthesis-C. Liu-2009 FUNCTION: Involved in the synthesis of aromatics of the suberin polymer. Specifically affects the accumulation of the ferulate constituent of suberin in roots and seeds, but has no effect on the content of p-coumarate or sinapate. {ECO:0000269|PubMed:19759341, ECO:0000269|PubMed:19846769}. ARA:AT5G41040-MONOMER; 2.3.1.188 50958,49255 Omega-hydroxypalmitate O-feruloyl transferase (EC 2.3.1.188) (Omega-hydroxyacid hydroxycinnamoyltransferase) (Protein ALIPHATIC SUBERIN FERULOYL TRANSFERASE),HXXXD-type acyl-transferase family protein hydroxycinnamoyltransferase activity [GO:0050734]; omega-hydroxypalmitate O-sinapoyl transferase activity [GO:0102406]; cell wall pectin biosynthetic process [GO:0052325]; suberin biosynthetic process [GO:0010345],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] DEVELOPMENTAL STAGE: Detected in seed coats in the inner layer of the outer integument at the beginning of the desiccation stage. Also expressed at the chalazal region as desiccation proceeds. TISSUE SPECIFICITY: Expressed in roots, seedlings, leaves, stems, flowers and siliques. Detected at the protein level in roots and in seed coats. {ECO:0000269|PubMed:19759341, ECO:0000269|PubMed:19846769}. locus:2162976; AT5G41040 Omega-hydroxypalmitate O-feruloyl Os11g0507200 protein (Fragment) A0A0P0Y2T0 A0A0P0Y2T0_ORYSJ Os11g0507200 OSNPB_110507200 ENOG411DRPE AVPL1,AVPL2 Q56ZN6,Q9FWR2 AVP2_ARATH,AVPX_ARATH Pyrophosphate-energized membrane proton pump 2 (EC 3.6.1.1) (AVP1-like protein 1) (Pyrophosphate-energized inorganic pyrophosphatase 2) (H(+)-PPase 2) (Vacuolar proton pyrophosphatase 2),Pyrophosphate-energized membrane proton pump 3 (EC 3.6.1.1) (AVP1-like protein 2) (Pyrophosphate-energized inorganic pyrophosphatase 3) (H(+)-PPase 3) ARA:AT1G78920-MONOMER;,ARA:AT1G16780-MONOMER; 3.6.1.1; 3.6.1.1 85133,85349 Pyrophosphate-energized membrane proton pump 2 (EC 3.6.1.1) (AVP1-like protein 1) (Pyrophosphate-energized inorganic pyrophosphatase 2) (H(+)-PPase 2) (Vacuolar proton pyrophosphatase 2),Pyrophosphate-energized membrane proton pump 3 (EC 3.6.1.1) (AVP1-like protein 2) (Pyrophosphate-energized inorganic pyrophosphatase 3) (H(+)-PPase 3) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; vacuole [GO:0005773]; hydrogen-translocating pyrophosphatase activity [GO:0009678]; inorganic diphosphatase activity [GO:0004427]; metal ion binding [GO:0046872]; proton transport [GO:0015992],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; hydrogen-translocating pyrophosphatase activity [GO:0009678]; inorganic diphosphatase activity [GO:0004427]; metal ion binding [GO:0046872]; proton transport [GO:0015992] TISSUE SPECIFICITY: Ubiquitous. Mostly expressed in cotyledons, roots and flowers. Especially high levels in trichomes, sepals and stamen filaments. {ECO:0000269|PubMed:10806252, ECO:0000269|PubMed:11163790}. locus:2037543; AT1G78920,AT1G16780 pyrophosphate-energized membrane proton pump Os02g0537900 protein (Putative vacuolar-type H+-translocating inorganic pyrophosphatase) Q6ER91 Q6ER91_ORYSJ Os02g0537900 OsJ_07039 OSJNBa0014M17.9 OSNPB_020537900 P0508B05.30 ENOG411DRP8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA galactosyl transferase GMA12/MNN10 family Os07g0417800 protein A0A0P0X578 A0A0P0X578_ORYSJ Os07g0417800 OSNPB_070417800 ENOG411DRP9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - C2H2 zinc finger protein expressed Os04g0690100 protein (Fragment) Q0J8S4,A0A0N7KJZ2 Q0J8S4_ORYSJ,A0A0N7KJZ2_ORYSJ Os04g0690100 Os04g0690100 OSNPB_040690100,Os04g0690100 OSNPB_040690100 ENOG411DRP2 Q6AWX1,Q9LK77,A0A1R7T3J1,A8MR85 Q6AWX1_ARATH,Q9LK77_ARATH,A0A1R7T3J1_ARATH,A8MR85_ARATH At2g30720 (Thioesterase/thiol ester dehydrase-isomerase superfamily protein),At5g48370 (Similarity to acyl-CoA thioesterase) (Thioesterase/thiol ester dehydrase-isomerase superfamily protein) (Uncharacterized protein At5g48370),Thioesterase/thiol ester dehydrase-isomerase superfamily protein ARA:AT2G30720-MONOMER;,ARA:AT5G48370-MONOMER; R-ATH-77289; 51523,49436,37016,49306 At2g30720 (Thioesterase/thiol ester dehydrase-isomerase superfamily protein),At5g48370 (Similarity to acyl-CoA thioesterase) (Thioesterase/thiol ester dehydrase-isomerase superfamily protein) (Uncharacterized protein At5g48370),Thioesterase/thiol ester dehydrase-isomerase superfamily protein isomerase activity [GO:0016853],peroxisome [GO:0005777]; isomerase activity [GO:0016853] locus:2054487;,locus:2156258; AT2G30720,AT5G48370 thioesterase Acyl-CoA thioester hydrolase-like (Os09g0517700 protein) (cDNA clone:J023088I03, full insert sequence) Q69MT1 Q69MT1_ORYSJ Os09g0517700 Os09g0517700 OSJNBb0034B12.30 OSNPB_090517700 ENOG411DRP3 LIP2,MPL1 Q67ZU1,A0A1P8BB65,A0A1P8BB68,A0A1P8BB89,A0A1P8BB72 LIP2_ARATH,A0A1P8BB65_ARATH,A0A1P8BB68_ARATH,A0A1P8BB89_ARATH,A0A1P8BB72_ARATH Triacylglycerol lipase 2 (EC 3.1.1.3),Myzus persicae-induced lipase 1 Susceptible to green peach aphid-J. Shah-2010 FUNCTION: Triacylglycerol (TAG) lipase. May be involved for TAG storage breakdown during seed germination (By similarity). {ECO:0000250}. ARA:AT5G14180-MONOMER; R-ATH-6809371; 3.1.1.3 46048,33911,32578,34718,35739 Triacylglycerol lipase 2 (EC 3.1.1.3),Myzus persicae-induced lipase 1 extracellular region [GO:0005576]; lipase activity [GO:0016298]; triglyceride lipase activity [GO:0004806]; defense response to insect [GO:0002213]; lipid catabolic process [GO:0016042],lipid metabolic process [GO:0006629] locus:2174648; AT5G14180 Triacylglycerol lipase Lipase Q6ZIA4,Q7F959 Q6ZIA4_ORYSJ,Q7F959_ORYSJ Os08g0529800 Os08g0529800 OJ1770_H02.28 OJ1789_C07.7 OSNPB_080529800,Os04g0280600 OsJ_14116 OSJNBa0094P09.4 OSNPB_040280600 ENOG411DRP0 TUN Q8L7M0 TUN_ARATH UDP-glycosyltransferase TURAN (EC 2.4.1.-) DISRUPTION PHENOTYPE: Pollen tube (PT) overgrowth inside the female gametophyte (FG) without PT rupture. Premature burst immediately after PT germination. Dwarf plants accumulating anthocyanins and dying prematurely in RNAi conditions. Impaired accumulation of ANX1 and ANX2 proteins. {ECO:0000269|PubMed:25919390}. FUNCTION: Required for pollen tube (PT) growth and integrity by affecting the stability of the pollen-specific ANX1 and ANX2 proteins. Involved in protein N-glycosylation in the endoplasmic reticulum (ER), especially in the female gametophyte. Mediates PT reception in synergids through protein glycosylation. {ECO:0000269|PubMed:25919390}. PATHWAY: Protein modification; protein glycosylation. R-ATH-446193; 2.4.1.- 52321 UDP-glycosyltransferase TURAN (EC 2.4.1.-) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; pollen tube development [GO:0048868]; pollen tube reception [GO:0010483]; protein glycosylation [GO:0006486] DEVELOPMENTAL STAGE: In ovules, mostly observed in the female gametophyte (FG) including the synergids, which showed a ring shaped localization around their nuclei, and throughout the pollen tube (PT). {ECO:0000269|PubMed:25919390}. locus:2017963; AT1G16570 Glycosyl transferase Glycosyl transferase, group 1 family protein, expressed (Os03g0180700 protein) (cDNA clone:J023029I02, full insert sequence),Os06g0564800 protein (Fragment) Q10QW6,A0A0P0WXY1 Q10QW6_ORYSJ,A0A0P0WXY1_ORYSJ LOC_Os03g08300 Os03g0180700 OsJ_09655 OSNPB_030180700,Os06g0564800 OSNPB_060564800 ENOG411DRP1 SYN4 Q8W1Y0 SSC14_ARATH Sister chromatid cohesion 1 protein 4 (AtRAD21-3) (AtRAD21.3) DISRUPTION PHENOTYPE: Decreased sister chromatid alignment along arms in tetraploid cells (4C) nuclei and impaired sister centromere cohesion, associated with a high frequency of anaphases with bridges. Slightly slower development leading to delayed flowering. {ECO:0000269|PubMed:16488915, ECO:0000269|PubMed:19533160}. Reduced sister chromatid alignment; No other phenotypes detected-I. Schubert-2009 FUNCTION: Involved in sister chromatid and centromere cohesion during mitosis. {ECO:0000269|PubMed:16488915, ECO:0000269|PubMed:19533160}. R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; 114059 Sister chromatid cohesion 1 protein 4 (AtRAD21-3) (AtRAD21.3) chromosome, centromeric region [GO:0000775]; nuclear cohesin complex [GO:0000798]; chromatin binding [GO:0003682]; cell division [GO:0051301]; centromeric sister chromatid cohesion [GO:0070601]; double-strand break repair [GO:0006302]; sister chromatid cohesion [GO:0007062] TISSUE SPECIFICITY: Expressed in tissues containing dividing cells such as seedlings, flower buds, flowers and inflorescence meristem tissue. {ECO:0000269|PubMed:16488915}. locus:2181457; AT5G16270 at5g16270 (e 0.0) atrad21.3 syn4 syn4 (sister chromatid cohesion 1 protein 4) Os01g0897800 protein (Putative RAD21-3),Os01g0897800 protein (Fragment) Q5N861,A0A0P0VBK4,A0A0P0VBM1 Q5N861_ORYSJ,A0A0P0VBK4_ORYSJ,A0A0P0VBM1_ORYSJ Os01g0897800 Os01g0897800 OsJ_04411 OSNPB_010897800 P0506A10.9 P0674H09.26,Os01g0897800 OSNPB_010897800 ENOG411DRP6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA haloacid dehalogenase-like hydrolase family protein HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed (Os03g0565200 protein) Q10I42 Q10I42_ORYSJ Os03g0565200 LOC_Os03g36750 Os03g0565200 OSNPB_030565200 ENOG411DRP4 Q56YR0,Q56YP1 Q56YR0_ARATH,Q56YP1_ARATH Chorismate synthase (Uncharacterized protein At4g01290) 108551,108494 Chorismate synthase (Uncharacterized protein At4g01290) mRNA binding [GO:0003729] locus:2124948; AT4G01290 NA Os06g0105900 protein,Os06g0105900 protein (Fragment) Q5VS68,A0A0P0WRN0 Q5VS68_ORYSJ,A0A0P0WRN0_ORYSJ Os06g0105900 Os06g0105900 OSNPB_060105900 P0644B06.31,Os06g0105900 OSNPB_060105900 ENOG411DRP5 RS31A,RS31,RS31a Q9ZPX8,P92964,A0A1P8B2J1 RS31A_ARATH,SRS31_ARATH,A0A1P8B2J1_ARATH Serine/arginine-rich splicing factor RS31A (At-RS31A) (At-RSp31A) (AtRS31A) (Arginine/serine-rich splicing factor RS32) (At-RSp32),Serine/arginine-rich splicing factor RS31 (At-RSp31) (AtRS31),RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:24763593}. FUNCTION: Probably involved in intron recognition and spliceosome assembly.,FUNCTION: Required for constitutive and alternative pre-mRNA splicing. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}.,MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses (PubMed:17319848) or light regimes (PubMed:24763593). This alternative splicing event is regulated by RS2Z33 and is not autoregulated (PubMed:16936312). {ECO:0000305|PubMed:16936312, ECO:0000305|PubMed:17319848, ECO:0000305|PubMed:24763593}.; MISCELLANEOUS: A mobile signal generated in the leaves triggers root alternative splicing responses to light. {ECO:0000305|PubMed:24763593}. 29681,31155,27139 Serine/arginine-rich splicing factor RS31A (At-RS31A) (At-RSp31A) (AtRS31A) (Arginine/serine-rich splicing factor RS32) (At-RSp32),Serine/arginine-rich splicing factor RS31 (At-RSp31) (AtRS31),RNA-binding (RRM/RBD/RNP motifs) family protein nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380],RNA binding [GO:0003723] TISSUE SPECIFICITY: Highly expressed in roots and flowers. A presumably longer alternatively spliced form is found in leaves, stems and flowers. {ECO:0000269|PubMed:16936312}. locus:2039975;,locus:2079502; AT2G46610,AT3G61860 arginine serine-rich splicing factor OSJNBa0020P07.8 protein (Os04g0118900 protein) Q7XTJ6 Q7XTJ6_ORYSJ Os04g0118900 Os04g0118900 OsJ_13581 OSJNBa0020P07.8 OSNPB_040118900 ENOG411DZ1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 65 (OsC3H65),Zinc finger CCCH domain-containing protein 42 (OsC3H42) Q2QTY2,Q0DBW8 C3H65_ORYSJ,C3H42_ORYSJ Os12g0278800 LOC_Os12g18120,Os06g0519400 LOC_Os06g32720 ENOG411E7HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7HD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7HE Q9M9R9,O64725,A0A1P8ATJ4 NDB3B_ARATH,NDB3A_ARATH,A0A1P8ATJ4_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B,NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A,NADH dehydrogenase (Ubiquinone)s FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. 8224,8051,11153 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B,NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A,NADH dehydrogenase (Ubiquinone)s integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; respiratory chain complex I [GO:0045271]; electron transport chain [GO:0022900]; photorespiration [GO:0009853],integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; electron transport chain [GO:0022900],integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; electron transport chain [GO:0022900] locus:2012592;,locus:2065243; AT1G14450,AT2G02510 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit Os02g0564200 protein (cDNA clone:001-020-H07, full insert sequence) (cDNA clone:J023110M11, full insert sequence),Os07g0175750 protein (Fragment) Q6Z7F3,A0A0N7KN06 Q6Z7F3_ORYSJ,A0A0N7KN06_ORYSJ P0020C11.12-1 OJ1712_E04.23-1 Os02g0564200 OsJ_07168 OSNPB_020564200,Os07g0175750 OSNPB_070175750 ENOG411E7HF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7HG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0535900 protein Q5Z5E8 Q5Z5E8_ORYSJ Os06g0535900 OsJ_21578 OSJNBa0001B21.28 OSNPB_060535900 ENOG411E7HH Q6NNJ2 Q6NNJ2_ARATH At5g01790 23148 At5g01790 locus:2181027; AT5G01790 NA NA NA NA NA NA NA NA ENOG411E7HI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase NA NA NA NA NA NA NA ENOG411E7HJ O81013 O81013_ARATH C2H2-type zinc finger family protein (Putative C2H2-type zinc finger protein) 33350 C2H2-type zinc finger family protein (Putative C2H2-type zinc finger protein) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2039493; AT2G26940 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E7HK TOM7-1,TOM7-2 Q9ASY8,Q3ECI7 TOM71_ARATH,TOM72_ARATH Mitochondrial import receptor subunit TOM7-1 (Translocase of outer membrane 7 kDa subunit 1),Mitochondrial import receptor subunit TOM7-2 (Translocase of outer membrane 7 kDa subunit 2) FUNCTION: Seems to act as a modulator of the dynamics of the mitochondrial protein transport machinery. Seems to promote the dissociation of subunits of the outer membrane translocase (By similarity). {ECO:0000250|UniProtKB:P53507}.,FUNCTION: Seems to act as a modulator of the dynamics of the mitochondrial protein transport machinery. Seems to promote the dissociation of subunits of the outer membrane translocase (By similarity). {ECO:0000250}. 8265,8362 Mitochondrial import receptor subunit TOM7-1 (Translocase of outer membrane 7 kDa subunit 1),Mitochondrial import receptor subunit TOM7-2 (Translocase of outer membrane 7 kDa subunit 2) integral component of membrane [GO:0016021]; mitochondrial outer membrane translocase complex [GO:0005742]; protein import into mitochondrial matrix [GO:0030150] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:505006668;,locus:2024623; AT5G41685,AT1G64220 Mitochondrial import receptor subunit Os05g0583400 protein,Os01g0626300 protein (TOM7-like protein),Os01g0732000 protein Q0DFL3,Q9FP98,Q5JM79 Q0DFL3_ORYSJ,Q9FP98_ORYSJ,Q5JM79_ORYSJ Os05g0583400 Os05g0583400 OsJ_19695 OSNPB_050583400,Os01g0626300 Os01g0626300 OsJ_02673 OSNPB_010626300 P0006C01.23 P0688A04.1,Os01g0732000 Os01g0732000 OsJ_03355 OSJNBb0036G09.3 OSNPB_010732000 P0435H01.40 ENOG411E7HM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein Gibberellin regulated protein (Os03g0607200 protein) (Putative gibberellin regulated protein) (cDNA clone:J023044E14, full insert sequence) Q75I50 Q75I50_ORYSJ LOC_Os03g41060 Os03g0607200 Os03g41060 OsJ_11688 OSNPB_030607200 ENOG411E7HN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Non-specific lipid transfer protein-like 1 (OsLTPL1),Os07g0489000 protein (cDNA, clone: J075179O09, full insert sequence),Os03g0385100 protein (Protease inhibitor/seed storage/LTP family protein, expressed) Q6ASY2,Q6YZQ8,Q10KG7 NLTL1_ORYSJ,Q6YZQ8_ORYSJ,Q10KG7_ORYSJ LTPL1 Os03g0385400 LOC_Os03g26820 B1246D11.7,Os07g0489000 OSJNBa0064M11.36 OSNPB_070489000,Os03g0385100 LOC_Os03g26800 OSNPB_030385100 ENOG411E7HT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH NA NA NA NA NA NA NA ENOG411E7HU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7HV F4HX10 F4HX10_ARATH FANTASTIC four-like protein (DUF3049) 34826 FANTASTIC four-like protein (DUF3049) locus:2199544; AT1G54740 Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411E7HY Q84JG6 Q84JG6_ARATH TPX2 (Targeting protein for Xklp2) protein family (Uncharacterized protein At3g26050) 58912 TPX2 (Targeting protein for Xklp2) protein family (Uncharacterized protein At3g26050) chloroplast [GO:0009507] locus:2092115; AT3G26050 NA NA NA NA NA NA NA NA ENOG411E7HZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0573000 protein (cDNA clone:002-186-C10, full insert sequence) Q6ZL23 Q6ZL23_ORYSJ Os07g0573000 OJ1699_E05.13 OSNPB_070573000 ENOG411E7H5 Q8VY55 Q8VY55_ARATH Bromodomain testis-specific protein (Uncharacterized protein At3g27420) 27543 Bromodomain testis-specific protein (Uncharacterized protein At3g27420) locus:2086671; AT3G27420 NA NA NA NA NA NA NA NA ENOG411E7H9 Q501C3,Q29Q18,A0A1I9LQS3,F4IYC2,A0A1I9LQS8 Q501C3_ARATH,Q29Q18_ARATH,A0A1I9LQS3_ARATH,F4IYC2_ARATH,A0A1I9LQS8_ARATH At3g62620 (Sucrose-phosphatase-like protein),Sucrose-phosphatase-like protein 31244,39430,26807,39017,39029 At3g62620 (Sucrose-phosphatase-like protein),Sucrose-phosphatase-like protein locus:2081750; AT3G62620 NA NA NA NA NA NA NA NA ENOG411DX5D PCMP-E38 Q9FJY9 PP448_ARATH Pentatricopeptide repeat-containing protein At5g66500, mitochondrial 58910 Pentatricopeptide repeat-containing protein At5g66500, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2154965; AT5G66500 pentatricopeptide repeat-containing protein At5g66500 Os03g0624800 protein (Pentatricopeptide, putative, expressed) (Putative pentatricopeptide repeat protein) (cDNA clone:J023076N22, full insert sequence),Os01g0514450 protein (Fragment) Q75LG4,A0A0P0V399 Q75LG4_ORYSJ,A0A0P0V399_ORYSJ Os03g0624800 LOC_Os03g42650 Os03g0624800 OSJNBb0079B16.5 OSNPB_030624800,Os01g0514450 OSNPB_010514450 ENOG411E7E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0475500 protein Q6ZDG2 Q6ZDG2_ORYSJ Os08g0475500 OJ1111_E05.3 OsJ_27661 OSNPB_080475500 P0451G12.25 ENOG411E7E8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L19 NA NA NA NA NA NA NA ENOG411E7E1 A0A1P8APV7 A0A1P8APV7_ARATH Ubiquitin-protein ligase (Fragment) 29015 Ubiquitin-protein ligase (Fragment) ligase activity [GO:0016874] Inherit from KOG: E3 ubiquitin- protein ligase NA NA NA NA NA NA NA ENOG411E7E0 O80783 O80783_ARATH At2g34340 (Expressed protein) (Uncharacterized protein At2g34340) 15338 At2g34340 (Expressed protein) (Uncharacterized protein At2g34340) response to gibberellin [GO:0009739] locus:2040799; AT2G34340 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E7E5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0059D20.11 protein (Os04g0191400 protein) (cDNA clone:J023091G07, full insert sequence) Q7XX47 Q7XX47_ORYSJ Os04g0191400 Os04g0191400 OsJ_13931 OSJNBa0059D20.11 OSNPB_040191400 ENOG411E7EK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0476500 protein) (cDNA clone:002-174-D09, full insert sequence),Os10g0372500 protein Q7XDE1,A0A0P0XU08 Q7XDE1_ORYSJ,A0A0P0XU08_ORYSJ Os10g0476500 LOC_Os10g33670 Os10g0476500 OSNPB_100476500,Os10g0372500 OSNPB_100372500 ENOG411E7EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7EH Q9SHP5 Q9SHP5_ARATH At1g28540 (F1K23.22) (Transmembrane protein) 11463 At1g28540 (F1K23.22) (Transmembrane protein) integral component of membrane [GO:0016021] locus:2018713; AT1G28540 NA Os06g0524500 protein (cDNA clone:J013065I19, full insert sequence),Os06g0525000 protein (Fragment) Q0DBV0,Q0DBU7 Q0DBV0_ORYSJ,Q0DBU7_ORYSJ Os06g0524500 Os06g0524500 OsJ_21530 OSNPB_060524500,Os06g0525000 Os06g0525000 OSNPB_060525000 ENOG411E7EC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7EB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7EA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0791300 protein (cDNA, clone: J100039D05, full insert sequence) Q6KAE4 Q6KAE4_ORYSJ Os02g0791300 Os02g0791300 OJ1046_F07.27 OSNPB_020791300 ENOG411E7EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os12g0177550 protein,Os12g0177600 protein A0A0P0Y7Q8,A0A0P0Y7I2 A0A0P0Y7Q8_ORYSJ,A0A0P0Y7I2_ORYSJ Os12g0177550 OSNPB_120177550,Os12g0177600 OSNPB_120177600 ENOG411E7EE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os10g0373300 protein,Os05g0558500 protein,Os10g0372700 protein,Os10g0549700 protein,Os10g0549550 protein Q8H7J8,B9FHW9,A0A0P0XTE5,A0A0P0XXH9,A0A0P0XXJ0 Q8H7J8_ORYSJ,B9FHW9_ORYSJ,A0A0P0XTE5_ORYSJ,A0A0P0XXH9_ORYSJ,A0A0P0XXJ0_ORYSJ OJA1208D02.15 Os10g0373300 LOC_Os10g22740 OsJ_31287 OSNPB_100373300,Os05g0558500 OsJ_19512 OSNPB_050558500,Os10g0372700 OSNPB_100372700,Os10g0549700 OSNPB_100549700,Os10g0549550 OSNPB_100549550 ENOG411E7ED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) NA NA NA NA NA NA NA ENOG411E7EZ Q9LTK4 Q9LTK4_ARATH At5g52160 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Protease inhibitor/seed storage/lipid transfer protein family protein) 10069 At5g52160 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Protease inhibitor/seed storage/lipid transfer protein family protein) peptidase activity [GO:0008233] locus:2145106; AT5G52160 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411E7EY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0494700 protein (cDNA, clone: J100036I21, full insert sequence) B7FA27 B7FA27_ORYSJ Os05g0494700 OSNPB_050494700 ENOG411E7EX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0398250 protein (Zinc finger, C3HC4 type family protein) Q84MW1 Q84MW1_ORYSJ LOC_Os03g28040 Os03g0398250 Os03g28040 OSNPB_030398250 ENOG411E7ES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0249350 protein B9FSJ3 B9FSJ3_ORYSJ Os06g0249350 OsJ_20822 OSNPB_060249350 ENOG411E7ER T8H10.40 Q6DYC0,Q9SCM8 Q6DYC0_ARATH,Q9SCM8_ARATH Uncharacterized protein,Uncharacterized protein T8H10.40 26805,26720 Uncharacterized protein,Uncharacterized protein T8H10.40 locus:2103493; AT3G57440 NA NA NA NA NA NA NA NA ENOG411E7EQ F24M12.130 Q94F04,A0A1I9LRN1 Q94F04_ARATH,A0A1I9LRN1_ARATH Coiled-coil 90B-like protein (DUF1640) (Uncharacterized protein At3g51090) (Uncharacterized protein F24M12.130),Coiled-coil 90B-like protein (DUF1640) 33687,31193 Coiled-coil 90B-like protein (DUF1640) (Uncharacterized protein At3g51090) (Uncharacterized protein F24M12.130),Coiled-coil 90B-like protein (DUF1640) mitochondrion [GO:0005739] locus:2080838; AT3G51090 Has 369 Blast hits to 367 proteins in 118 species Archae - 2 NA NA NA NA NA NA NA ENOG411E7EP Q9SB65 Q9SB65_ARATH Uncharacterized protein At4g24700 (Uncharacterized protein F22K18.100) 16864 Uncharacterized protein At4g24700 (Uncharacterized protein F22K18.100) locus:2121919; AT4G24700 NA Os02g0595200 protein Q6ZI59 Q6ZI59_ORYSJ Os02g0595200 OJ1126_D09.23 OSNPB_020595200 ENOG411E7EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E7EU NOP10 Q93XX8,F4IVE5 NOP10_ARATH,F4IVE5_ARATH H/ACA ribonucleoprotein complex subunit 3-like protein (Nucleolar protein 10),Nucleolar RNA-binding Nop10p family protein "FUNCTION: Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine (""psi"") residues may serve to stabilize the conformation of rRNAs (By similarity). {ECO:0000250}." 7392,7263 H/ACA ribonucleoprotein complex subunit 3-like protein (Nucleolar protein 10),Nucleolar RNA-binding Nop10p family protein box H/ACA scaRNP complex [GO:0072589]; box H/ACA snoRNP complex [GO:0031429]; box H/ACA telomerase RNP complex [GO:0090661]; Cajal body [GO:0015030]; nucleolus [GO:0005730]; box H/ACA snoRNA binding [GO:0034513]; telomerase RNA binding [GO:0070034]; polar nucleus fusion [GO:0010197]; positive regulation of telomerase RNA localization to Cajal body [GO:1904874]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120]; telomere maintenance via telomerase [GO:0007004],snoRNA binding [GO:0030515]; pseudouridine synthesis [GO:0001522]; ribosome biogenesis [GO:0042254] locus:2054804; AT2G20490 H ACA ribonucleoprotein complex subunit Os02g0618250 protein B9F144 B9F144_ORYSJ Os02g0618250 Os02g0618250 OsJ_07547 OSNPB_020618250 ENOG411DS88 GAL1 Q9SEE5 GALK1_ARATH Galactokinase (EC 2.7.1.6) (Galactose kinase) FUNCTION: Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate. {ECO:0000269|PubMed:19509290, ECO:0000269|PubMed:9225860}. PATHWAY: Carbohydrate metabolism; galactose metabolism. ARA:AT1G64440-MONOMER;ARA:AT3G06580-MONOMER;MetaCyc:AT3G06580-MONOMER; Galactose metabolism (00052),Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Metabolic pathways (01100) 2.7.1.6 54341 Galactokinase (EC 2.7.1.6) (Galactose kinase) cytosol [GO:0005829]; ATP binding [GO:0005524]; galactokinase activity [GO:0004335]; galactose binding [GO:0005534]; metal ion binding [GO:0046872]; carbohydrate phosphorylation [GO:0046835]; galactose metabolic process [GO:0006012] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and young siliques. Higher expression in the elongating middle stem region than in the lower or upper stem region. {ECO:0000269|PubMed:19509290}. locus:2084344; AT3G06580 Galactokinase Galactokinase, putative, expressed (Os03g0832600 protein) (Putative galactose kinase) Q7Y152 Q7Y152_ORYSJ Os03g0832600 LOC_Os03g61710 Os03g0832600 OSJNBa0078D06.32 OSNPB_030832600 ENOG411DS87 WNK6,WNK7,WNK3 Q8S8Y8,Q8LST2,Q9STK6,A0A1P8AQZ4,A0A1P8AQW9,A0A1P8AQY5,A0A1I9LR81,A0A1I9LP39 WNK6_ARATH,WNK7_ARATH,WNK3_ARATH,A0A1P8AQZ4_ARATH,A0A1P8AQW9_ARATH,A0A1P8AQY5_ARATH,A0A1I9LR81_ARATH,A0A1I9LP39_ARATH Probable serine/threonine-protein kinase WNK6 (AtWNK6) (EC 2.7.11.1) (Protein kinase with no lysine 6),Probable serine/threonine-protein kinase WNK7 (AtWNK7) (EC 2.7.11.1) (Protein kinase with no lysine 7),Probable serine/threonine-protein kinase WNK3 (AtWNK3) (EC 2.7.11.1) (Protein kinase with no lysine 3),Protein kinase superfamily protein,With no lysine (K) kinase 3,With no lysine (K) kinase 6 FUNCTION: May regulate flowering time by modulating the photoperiod pathway. {ECO:0000250}. 2.7.11.1 64866,63480,58949,48738,69013,56136,47624,63003 Probable serine/threonine-protein kinase WNK6 (AtWNK6) (EC 2.7.11.1) (Protein kinase with no lysine 6),Probable serine/threonine-protein kinase WNK7 (AtWNK7) (EC 2.7.11.1) (Protein kinase with no lysine 7),Probable serine/threonine-protein kinase WNK3 (AtWNK3) (EC 2.7.11.1) (Protein kinase with no lysine 3),Protein kinase superfamily protein,With no lysine (K) kinase 3,With no lysine (K) kinase 6 cytosol [GO:0005829]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2093994;,locus:2028521;,locus:504955638; AT3G18750,AT1G49160,AT3G48260 serine threonine-protein kinase Probable serine/threonine-protein kinase WNK4 (OsWNK4) (EC 2.7.11.1) (Protein kinase with no lysine 4),Probable serine/threonine-protein kinase WNK2 (OsWNK2) (EC 2.7.11.1) (Protein DISEASE RELATIVE SIGNAL 1) (Protein kinase with no lysine 2),Os07g0185000 protein,Os07g0572800 protein (Fragment) Q6EU49,Q65X23,A0A0N7KN16,A0A0P0X7R6 WNK4_ORYSJ,WNK2_ORYSJ,A0A0N7KN16_ORYSJ,A0A0P0X7R6_ORYSJ WNK4 Os02g0672800 LOC_Os02g45130 OJ1197_E09.9 OsJ_007637,WNK2 RDRS1 Os05g0108300 LOC_Os05g01780 OsJ_16836 OSJNBa0068N01.12,Os07g0185000 OSNPB_070185000,Os07g0572800 OSNPB_070572800 ENOG411DS85 Q9M837,A0A1I9LT57,A0A178VK06 Q9M837_ARATH,A0A1I9LT57_ARATH,A0A178VK06_ARATH Putative RRM-containing protein (RNA-binding (RRM/RBD/RNP motifs) family protein) (T27C4.15 protein) (Uncharacterized protein At3g04500/T27C4_15),RNA-binding (RRM/RBD/RNP motifs) family protein 26991,19305,20242 Putative RRM-containing protein (RNA-binding (RRM/RBD/RNP motifs) family protein) (T27C4.15 protein) (Uncharacterized protein At3g04500/T27C4_15),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2100840; AT3G04500 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os02g0622500 protein (cDNA clone:J013113P22, full insert sequence),Os08g0567200 protein (Putative RNA recognition motif (RRM)-containing protein),Os08g0567200 protein B7EDS1,Q6YPC4,A0A0P0XJ03 B7EDS1_ORYSJ,Q6YPC4_ORYSJ,A0A0P0XJ03_ORYSJ Os02g0622500 OSNPB_020622500,Os08g0567200 OsJ_28330 OSJNBa0044E16.40 OSJNOa199K18.1 OSNPB_080567200,Os08g0567200 OSNPB_080567200 ENOG411DS84 MAA3 B6SFA4,A0A1P8B6E0 MAA3_ARATH,A0A1P8B6E0_ARATH Probable helicase MAGATAMA 3 (EC 3.6.4.-) (SEN1-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: Defective in female gametophyte development and micropylar pollen tube guidance leading to zygotic lethality. Reduced size of nucleoli of polar nuclei in female gametophyte. {ECO:0000269|PubMed:11003848}. Homozygotes are not recovered. Female gametophyte development is delayed and asynchronous. During fertilization fusion of polar nuclei does not occur. Polar nuclei nucloeli are smaller than WT. Male and female gametophyte defective; Rare embryo defective (inferred)-K. Okada-2008 FUNCTION: Probable helicase that may regulate RNA molecules involved in nucleolar organization and pollen tube guidance. {ECO:0000269|PubMed:11003848, ECO:0000269|PubMed:18772186}. 3.6.4.- 91540,81060 Probable helicase MAGATAMA 3 (EC 3.6.4.-) (SEN1-like protein),P-loop containing nucleoside triphosphate hydrolases superfamily protein nucleus [GO:0005634]; ATP binding [GO:0005524]; helicase activity [GO:0004386]; embryo sac development [GO:0009553]; pollen tube guidance [GO:0010183]; pollen-pistil interaction [GO:0009875],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in flowers, siliques, leaves, roots and shoot apex. {ECO:0000269|PubMed:18772186}. locus:2130384; AT4G15570 Inherit from KOG: tRNA-splicing endonuclease positive Os04g0424200 protein,Os03g0440200 protein,Os06g0310200 protein,Os06g0309400 protein (Fragment) A0A0P0WAJ1,A0A0P0VZ57,A0A0N7KM00,A0A0P0WVR3 A0A0P0WAJ1_ORYSJ,A0A0P0VZ57_ORYSJ,A0A0N7KM00_ORYSJ,A0A0P0WVR3_ORYSJ Os04g0424200 OSNPB_040424200,Os03g0440200 OSNPB_030440200,Os06g0310200 OSNPB_060310200,Os06g0309400 OSNPB_060309400 ENOG411DY9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS-box transcription factor MADS-box transcription factor 21 (OsMADS21) (RMADS207) Q8RU31 MAD21_ORYSJ MADS21 Os01g0886200 LOC_Os01g66290 OsJ_04337 P0408G07.26 P0434C04.5 FUNCTION: Probable transcription factor. ENOG411DS8G PBL3,PBL2 O49840,O49839 PBL3_ARATH,PBL2_ARATH Probable serine/threonine-protein kinase PBL3 (EC 2.7.11.1) (PBS1-like protein 3) (Protein kinase 2B),Probable serine/threonine-protein kinase PBL2 (EC 2.7.11.1) (PBS1-like protein 2) (Protein kinase 2A) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20413097}. FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}.,FUNCTION: Involved in disease resistance signaling (PubMed:20413097, PubMed:23951354). Contributes to pathogen-associated molecur pattern (PAMP)-triggered immunity (PTI) signaling and defense responses downstream of FLS2 (PubMed:20413097). Required for the bacterial XopAC/AvrAC effector-triggered immunity (ETI) against Xanthomonas campestris (PubMed:23951354). {ECO:0000269|PubMed:20413097, ECO:0000269|PubMed:23951354}. 2.7.11.1 46289,46296 Probable serine/threonine-protein kinase PBL3 (EC 2.7.11.1) (PBS1-like protein 3) (Protein kinase 2B),Probable serine/threonine-protein kinase PBL2 (EC 2.7.11.1) (PBS1-like protein 2) (Protein kinase 2A) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; Tat protein binding [GO:0030957]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Strongly expressed in leaves, moderately in flowers, and barely in roots. {ECO:0000269|PubMed:9150601}.,TISSUE SPECIFICITY: Strongly expressed in leaves, moderately in roots, and barely in flowers, mostly in pedicels. {ECO:0000269|PubMed:9150601}. locus:2058847;,locus:2012492; AT2G02800,AT1G14370 protein kinase 2B chloroplastic-like NA NA NA NA NA NA NA ENOG411DS8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox U-box domain-containing protein 4 (EC 2.3.2.27) (Plant U-box protein 4) (OsPUB4) (RING-type E3 ubiquitin transferase PUB4),Os02g0234300 protein (Fragment) Q6EUK7,A0A0P0VGW6 PUB04_ORYSJ,A0A0P0VGW6_ORYSJ PUB4 Os02g0234300 LOC_Os02g13960 OJ1145_E05.4 OsJ_06003,Os02g0234300 OSNPB_020234300 FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. {ECO:0000269|PubMed:19825583}. ENOG411DS8Z TBL6 Q9LZQ1,A0A1I9LPP7 TBL6_ARATH,A0A1I9LPP7_ARATH Protein trichome birefringence-like 6,TRICHOME BIREFRINGENCE-LIKE 6 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 54638,47830 Protein trichome birefringence-like 6,TRICHOME BIREFRINGENCE-LIKE 6 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],integral component of membrane [GO:0016021] locus:2096094; AT3G62390 Pfam:DUF231 Expressed protein (Os03g0307700 protein) Q10MI5 Q10MI5_ORYSJ LOC_Os03g19470 Os03g0307700 OsJ_10568 OSNPB_030307700 ENOG411DS8S CIPK7,CIPK4 Q9XIW0,Q9SUL7 CIPK7_ARATH,CIPK4_ARATH CBL-interacting serine/threonine-protein kinase 7 (EC 2.7.11.1) (SNF1-related kinase 3.10) (SOS2-like protein kinase PKS7) (Serine/threonine-protein kinase SR2) (AtSR2) (AtSRPK1),CBL-interacting serine/threonine-protein kinase 4 (EC 2.7.11.1) (SNF1-related kinase 3.3) (SOS2-like protein kinase PKS9) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). Phosphorylates the rice sucrose synthase (SuSy) in vitro in an allosteric manner. Involved in cold response. {ECO:0000250, ECO:0000269|PubMed:11212922, ECO:0000269|PubMed:21600398}.,FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 48266,47826 CBL-interacting serine/threonine-protein kinase 7 (EC 2.7.11.1) (SNF1-related kinase 3.10) (SOS2-like protein kinase PKS7) (Serine/threonine-protein kinase SR2) (AtSR2) (AtSRPK1),CBL-interacting serine/threonine-protein kinase 4 (EC 2.7.11.1) (SNF1-related kinase 3.3) (SOS2-like protein kinase PKS9) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to cold [GO:0009409],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Strongly expressed in leaves, but barely expressed in roots, stems or flowers. {ECO:0000269|PubMed:11402167, ECO:0000269|PubMed:21600398}. locus:2094553;,locus:2129930; AT3G23000,AT4G14580 CBL-interacting protein kinase CBL-interacting protein kinase 7 (EC 2.7.11.1) (OsCIPK07),CBL-interacting protein kinase 4 (EC 2.7.11.1) (OsCIPK04),Os12g0603700 protein Q75GK4,Q2QMI0,A0A0P0YC00 CIPK7_ORYSJ,CIPK4_ORYSJ,A0A0P0YC00_ORYSJ CIPK7 Os03g0634400 LOC_Os03g43440 OsJ_011355 OSJNBa0010N03.13,CIPK4 Os12g0603700 LOC_Os12g41090,Os12g0603700 OSNPB_120603700 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411DS8P WHY2 Q8VYF7 WHY2_ARATH Single-stranded DNA-binding protein WHY2, mitochondrial (Protein WHIRLY 2) (AtWHY2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18423020}. FUNCTION: Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. MISCELLANEOUS: Plants over-expressing WHY2 are small with dark-green distorted leaves, exhibit early senescence and produces shorter siliques with half the amount of seeds found in wild-type plants. {ECO:0000305|PubMed:18423020}. 26295 Single-stranded DNA-binding protein WHY2, mitochondrial (Protein WHIRLY 2) (AtWHY2) mitochondrion [GO:0005739]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; single-stranded DNA binding [GO:0003697]; defense response [GO:0006952]; DNA repair [GO:0006281]; regulation of transcription, DNA-templated [GO:0006355] locus:2032293; AT1G71260 DNA repair Os02g0158400 protein (Putative Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2) (cDNA clone:001-039-A03, full insert sequence) (cDNA clone:006-311-F08, full insert sequence) (cDNA clone:J013025B22, full insert sequence) Q6ET43 Q6ET43_ORYSJ Os02g0158400 Os02g0158400 B1103G11.17 OsJ_05450 OSNPB_020158400 P0419H03.37 ENOG411EEJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEJ9 EMB2204 Q9LM50 E2204_ARATH UPF0725 protein EMB2204 (Protein EMBRYO DEFECTIVE 2204) Embryo defective; Globular-D. Meinke-2002 FUNCTION: May be involved in embryogenesis. {ECO:0000269|PubMed:15266054}. 38640 UPF0725 protein EMB2204 (Protein EMBRYO DEFECTIVE 2204) multicellular organism development [GO:0007275] locus:2030576; AT1G22090 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EEJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EEJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: reductase NA NA NA NA NA NA NA ENOG411EEJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Organic Anion Transporter Polypeptide (OATP) family NA NA NA NA NA NA NA ENOG411EEJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEJ4 Q84JE7,F4JFH6 Q84JE7_ARATH,F4JFH6_ARATH Uncharacterized protein At2g46535,Auxin response factor, putative (DUF688) 19627,20333 Uncharacterized protein At2g46535,Auxin response factor, putative (DUF688) locus:504956083;,locus:2079482; AT2G46535,AT3G61840 Protein of unknown function (DUF688) NA NA NA NA NA NA NA ENOG411EEJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EEJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14_3_3 NA NA NA NA NA NA NA ENOG411EEJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) Os09g0555900 protein A0A0N7KR90 A0A0N7KR90_ORYSJ Os09g0555900 OSNPB_090555900 ENOG411EEJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EEJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411EEJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Receptor family ligand binding region NA NA NA NA NA NA NA ENOG411EEJP TRX8 Q9CAS1 TRXH8_ARATH Thioredoxin H8 (AtTrxh8) FUNCTION: Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes. 17250 Thioredoxin H8 (AtTrxh8) cytoplasm [GO:0005737]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2196784; AT1G69880 thioredoxin H-type 8 NA NA NA NA NA NA NA ENOG411EEJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Malonyl-CoA decarboxylase (MCD) NA NA NA NA NA NA NA ENOG411EEJR CML2 Q9SU00 CML2_ARATH Calmodulin-like protein 2 (Protein UNFERTILIZED EMBRYO SAC 14) FUNCTION: Potential calcium sensor that is required for pollen tube attraction for ovule fertilization. {ECO:0000269|PubMed:15634699}. R-ATH-6798695; 17182 Calmodulin-like protein 2 (Protein UNFERTILIZED EMBRYO SAC 14) cytoplasm [GO:0005737]; calcium ion binding [GO:0005509]; double fertilization forming a zygote and endosperm [GO:0009567] locus:2135768; AT4G12860 Pfam:efhand NA NA NA NA NA NA NA ENOG411EEJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EEJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VIT family NA NA NA NA NA NA NA ENOG411EEJU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EEJV MMI9.4 Q9LVB5 Q9LVB5_ARATH Embryo-specific protein 3, (ATS3) (Embryo-specific protein-like) (Similarity to embryo-specific protein 3) 24046 Embryo-specific protein 3, (ATS3) (Embryo-specific protein-like) (Similarity to embryo-specific protein 3) anchored component of membrane [GO:0031225]; response to karrikin [GO:0080167] locus:2167928; AT5G62210 Embryo-specific protein 3 (ATS3) NA NA NA NA NA NA NA ENOG411EEJW NTF2,NTF2A,NTF2B Q9C7F5,Q9FZK4,A8MS55 NTF2_ARATH,Q9FZK4_ARATH,A8MS55_ARATH Nuclear transport factor 2 (NTF-2),F17L21.10 (Nuclear transport factor 2A) (Similar to nuclear transport factor 2),Nuclear transport factor 2B FUNCTION: Facilitates protein transport into the nucleus. Interacts with various nucleoporins and with Ran-GDP. Could be part of a multicomponent system of cytosolic factors that assemble at the pore complex during nuclear import. {ECO:0000269|PubMed:16428596}. 14002,13527,15004 Nuclear transport factor 2 (NTF-2),F17L21.10 (Nuclear transport factor 2A) (Similar to nuclear transport factor 2),Nuclear transport factor 2B cytoplasm [GO:0005737]; protein transport [GO:0015031],cytoplasm [GO:0005737]; nuclear envelope [GO:0005635]; nucleus [GO:0005634]; protein import into nucleus [GO:0006606],cytosol [GO:0005829]; nuclear envelope [GO:0005635]; plasma membrane [GO:0005886]; transport [GO:0006810] locus:2015914;,locus:2010509; AT1G27970,AT1G27310 Nuclear transport factor 2 (NTF2) domain NA NA NA NA NA NA NA ENOG411EEJH Q6NPI4,A0A1P8AZV6 Q6NPI4_ARATH,A0A1P8AZV6_ARATH At2g03505 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein 17551,12997 At2g03505 (Carbohydrate-binding X8 domain superfamily protein),Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:504955930; AT2G03505 X8 domain NA NA NA NA NA NA NA ENOG411EEJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EEJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin family Os04g0483000 protein (cDNA clone:J033110C02, full insert sequence) B7F7Z9 B7F7Z9_ORYSJ Os04g0483000 OSNPB_040483000 ENOG411EEJK Q5XVF5 Q5XVF5_ARATH Transmembrane protein 33085 Transmembrane protein integral component of membrane [GO:0016021] locus:2018432; AT1G75360 NA NA NA NA NA NA NA NA ENOG411EEJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease (pollen allergen) NA NA NA NA NA NA NA ENOG411EEJA Q8LC95 ENL3_ARATH Early nodulin-like protein 3 (Phytocyanin-like protein) 19768 Early nodulin-like protein 3 (Phytocyanin-like protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; electron carrier activity [GO:0009055] locus:2179240; AT5G25090 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EEJB Q9LR23 Q9LR23_ARATH At1g23350 (F26F24.23) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At1g23350) 17264 At1g23350 (F26F24.23) (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Uncharacterized protein At1g23350) cell periphery [GO:0071944]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910] locus:2028035; AT1G23350 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EEJC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3598) NA NA NA NA NA NA NA ENOG411EEJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEJE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EEJF Q6DR08,A0A1P8AWC9,F4HS38 Q6DR08_ARATH,A0A1P8AWC9_ARATH,F4HS38_ARATH Transmembrane protein 26429,26241,22839 Transmembrane protein integral component of membrane [GO:0016021] locus:2016329; AT1G80200 NA NA NA NA NA NA NA NA ENOG411EEJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein Os02g0317500 protein (Putative N7 protein) (cDNA clone:J033091H09, full insert sequence) Q6Z843 Q6Z843_ORYSJ Os02g0317500 OJ1134_B09.4 OSNPB_020317500 P0572D06.38 ENOG411EGI7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0675750 protein A0A0P0VN69 A0A0P0VN69_ORYSJ Os02g0675750 OSNPB_020675750 ENOG411EGI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EGIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EGIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:PRCC_Cterm NA NA NA NA NA NA NA ENOG411EGIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EGIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411EKGS GT-4 Q9LU92 TGT4_ARATH Trihelix transcription factor GT-4 (Trihelix DNA-binding protein GT-4) FUNCTION: Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. 42783 Trihelix transcription factor GT-4 (Trihelix DNA-binding protein GT-4) nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2092130; AT3G25990 SANT NA NA NA NA NA NA NA ENOG411ECKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Myblike DNAbinding domain containing protein NA NA NA NA NA NA NA ENOG411EC27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EC25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Os04g0304600 protein,Chalcone and stilbene synthases, N-terminal domain containing protein, expressed (Os11g0566800 protein) (cDNA clone:006-208-A07, full insert sequence),Os01g0602600 protein (Fragment) B9FEC8,Q2R2G0,A0A0P0V4Z5 B9FEC8_ORYSJ,Q2R2G0_ORYSJ,A0A0P0V4Z5_ORYSJ Os04g0304600 OsJ_14209 OSNPB_040304600,Os11g0566800 LOC_Os11g35930 Os11g0566800 OSNPB_110566800,Os01g0602600 OSNPB_010602600 ENOG411EC23 Q9LJ50 Q9LJ50_ARATH Mitochondrial protein-like contains similarity to AAA-type ATPase (P-loop containing nucleoside triphosphate hydrolases superfamily protein) 51105 Mitochondrial protein-like contains similarity to AAA-type ATPase (P-loop containing nucleoside triphosphate hydrolases superfamily protein) ATP binding [GO:0005524]; hydrolase activity [GO:0016787] locus:2086591; AT3G29800 ATPase family associated with various cellular activities (AAA) NA NA NA NA NA NA NA ENOG411EC20 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavodoxin-like fold Os08g0139200 protein (Putative quinone-oxidoreductase QR2) (cDNA clone:J023054M12, full insert sequence) Q6ZKI0 Q6ZKI0_ORYSJ Os08g0139200 Os08g0139200 OJ1119_D01.19 OsJ_25988 OSNPB_080139200 ENOG411EC2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC2W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os02g0792500 protein,Os02g0795732 protein,Os02g0795666 protein,Os05g0341100 protein,Os02g0795600 protein A0A0P0VQL0,A0A0P0VQN5,A0A0P0VQL6,A0A0P0WL17,A0A0P0VQL5 A0A0P0VQL0_ORYSJ,A0A0P0VQN5_ORYSJ,A0A0P0VQL6_ORYSJ,A0A0P0WL17_ORYSJ,A0A0P0VQL5_ORYSJ Os02g0792500 OSNPB_020792500,Os02g0795732 OSNPB_020795732,Os02g0795666 OSNPB_020795666,Os05g0341100 OSNPB_050341100,Os02g0795600 OSNPB_020795600 ENOG411EC2R CSLA14 Q84W06 CSLAE_ARATH Probable mannan synthase 14 (EC 2.4.1.-) (Cellulose synthase-like protein A14) (AtCslA14) FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q9LZR3}. ARA:AT3G56000-MONOMER; 2.4.1.- 61483 Probable mannan synthase 14 (EC 2.4.1.-) (Cellulose synthase-like protein A14) (AtCslA14) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:2082083; AT3G56000 Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411EC2S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatase 2C Probable protein phosphatase 2C 16 (OsPP2C16) (EC 3.1.3.16),Probable protein phosphatase 2C 18 (OsPP2C18) (EC 3.1.3.16),Probable protein phosphatase 2C 17 (OsPP2C17) (EC 3.1.3.16),Os02g0598500 protein,Os02g0599200 protein (Fragment),Os02g0599151 protein (Fragment) Q6K1U4,A3A8Q4,Q6K1U0,Q6K1U8,A0A0N7KFL9,A0A0P0VL93 P2C16_ORYSJ,P2C18_ORYSJ,P2C17_ORYSJ,Q6K1U8_ORYSJ,A0A0N7KFL9_ORYSJ,A0A0P0VL93_ORYSJ Os02g0599150 LOC_Os02g38580 OJ1212_D02.33 OSJNBa0038P01.17,Os02g0599200 LOC_Os02g38710 OsJ_007176 OSJNBa0038P01.37,Os02g0599150 LOC_Os02g38690 OSJNBa0038P01.32,Os02g0598500 Os02g0598500 OJ1212_D02.19 OSJNBa0038P01.3 OSNPB_020598500,Os02g0599200 OSNPB_020599200,Os02g0599151 OSNPB_020599151 ENOG411EC2Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os01g0535400 protein (cDNA clone:J013036D01, full insert sequence),Os11g0601500 protein B7EBD9,A0A0N7KT65 B7EBD9_ORYSJ,A0A0N7KT65_ORYSJ Os01g0535400 OSNPB_010535400,Os11g0601500 OSNPB_110601500 ENOG411EC2E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EE13 MKD10.80 Q9FKR0,A0A1P8BFJ6 MT878_ARATH,A0A1P8BFJ6_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ARA:AT5G38780-MONOMER; 2.1.1.- 41006,35546 Probable S-adenosylmethionine-dependent methyltransferase At5g38780 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein metal ion binding [GO:0046872]; methyltransferase activity [GO:0008168],methyltransferase activity [GO:0008168] locus:2166640; AT5G38780 SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EKGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0518500 protein A0A0P0X727 A0A0P0X727_ORYSJ Os07g0518500 OSNPB_070518500 ENOG411EE16 OFP15 Q9SJ45 OPF15_ARATH Transcription repressor OFP15 (Ovate family protein 15) (AtOFP15) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21886836}. FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP15 show small rosette size, late flowering, reduced fertilization and blunt-end siliques. {ECO:0000305|PubMed:21886836}. 29068 Transcription repressor OFP15 (Ovate family protein 15) (AtOFP15) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, cauline leaves, shoots, flower buds and siliques. {ECO:0000269|PubMed:21886836}. locus:2039290; AT2G36050 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411EKIR O49570 O49570_ARATH At4g31200 (Predicted protein) (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein) R-ATH-72163; 72496 At4g31200 (Predicted protein) (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein) apoplast [GO:0048046]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2128091; AT4G31200 surp module family protein Os06g0682700 protein (Fragment) A0A0P0X0F2 A0A0P0X0F2_ORYSJ Os06g0682700 OSNPB_060682700 ENOG411EE1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DY3G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Interferon-related developmental regulator (IFRD) Interferon-related developmental regulator family protein, expressed (Os03g0448700 protein) (Putative Interferon-related developmental regulator),Os07g0588000 protein (Putative interferon-related protein) (cDNA clone:J013025G13, full insert sequence) Q75HB6,Q6ZIP6 Q75HB6_ORYSJ,Q6ZIP6_ORYSJ Os03g0448700 LOC_Os03g33590 Os03g0448700 OSJNBa0034E08.29 OSNPB_030448700,Os07g0588000 OJ1047_C01.15 OSJNBb0005G07.109 OSNPB_070588000 ENOG411EE1P PDCB2,E13L3 Q9SD84,A0A1P8BHI7 PDCB2_ARATH,A0A1P8BHI7_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 2 (AtPDCB2) (Glucan endo-1,3-beta-glucosidase-like protein 3),Glucan endo-1,3-beta-glucosidase-like protein 3 FUNCTION: Able to bind (1->3)-beta-D-glucans (laminarin). {ECO:0000269|PubMed:19223515}. 19900,22146 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 (AtPDCB2) (Glucan endo-1,3-beta-glucosidase-like protein 3),Glucan endo-1,3-beta-glucosidase-like protein 3 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasmodesma [GO:0009506]; (1->3)-beta-D-glucan binding [GO:0001872]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; response to heat [GO:0009408] TISSUE SPECIFICITY: Expressed in the shoot apical region and in young leaves but also detected in the laminar and vasculature of mature leaves. {ECO:0000269|PubMed:19223515}. locus:2142778; AT5G08000 X8 domain NA NA NA NA NA NA NA ENOG411EE1S CSLA10 Q9LR87,A0A1P8AMK2 CSLAA_ARATH,A0A1P8AMK2_ARATH Probable mannan synthase 10 (EC 2.4.1.-) (Cellulose synthase-like protein A10) (AtCslA10),Cellulose synthase-like A10 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q9LZR3}. ARA:AT1G24070-MONOMER; 2.4.1.- 64155,47111 Probable mannan synthase 10 (EC 2.4.1.-) (Cellulose synthase-like protein A10) (AtCslA10),Cellulose synthase-like A10 Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555],integral component of membrane [GO:0016021] locus:2199917; AT1G24070 Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411EE1V Q9FHK7 Y5516_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g05160 (EC 2.7.11.-) Interfascicular cambium based tissue formation was decreased by 40% compared to wild type. FUNCTION: Probable leucine-rich repeat receptor-like protein kinase. 2.7.11.- 70564 Probable leucine-rich repeat receptor-like protein kinase At5g05160 (EC 2.7.11.-) cell wall [GO:0005618]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; positive regulation of secondary growth [GO:2000605] locus:2156784; AT5G05160 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411E93I TRM33 B3H5G8 B3H5G8_ARATH Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein 50404 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein transferase activity [GO:0016740] locus:4515102489; AT1G01695 NA NA NA NA NA NA NA NA ENOG411EJK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function DUF223 NA NA NA NA NA NA NA ENOG411EJK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJK4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os04g0487800 protein B9FFU2 B9FFU2_ORYSJ Os04g0487800 OsJ_15264 OSNPB_040487800 ENOG411EJKY F19K23.16 O04575,O04573,Q39168,O04587,O04588 U540C_ARATH,U540B_ARATH,U540A_ARATH,U540D_ARATH,O04588_ARATH UPF0540 protein At1g62080,UPF0540 protein At1g62060,UPF0540 protein At1g62000,UPF0540 protein At1g62220,At1g62225 (F19K23.16 protein) (Transmembrane protein) (Uncharacterized protein At1g62225) 15113,14969,14872,15463,14323 UPF0540 protein At1g62080,UPF0540 protein At1g62060,UPF0540 protein At1g62000,UPF0540 protein At1g62220,At1g62225 (F19K23.16 protein) (Transmembrane protein) (Uncharacterized protein At1g62225) apoplast [GO:0048046]; mucilage biosynthetic process [GO:0010192]; seed coat development [GO:0010214],mucilage biosynthetic process [GO:0010192]; seed coat development [GO:0010214],integral component of membrane [GO:0016021] locus:2018072;,locus:2018077;,locus:2036793;,locus:2018067;,locus:504956293; AT1G62080,AT1G62060,AT1G62000,AT1G62220,AT1G62225 NA NA NA NA NA NA NA NA ENOG411EJKV Q8S8D5,A8MRM4,A8MQI5,A8MS38 Q8S8D5_ARATH,A8MRM4_ARATH,A8MQI5_ARATH,A8MS38_ARATH Expressed protein (Plant thionin family protein),Plant thionin family protein 7522,9770,8897,7384 Expressed protein (Plant thionin family protein),Plant thionin family protein locus:505006259;,locus:4010713638;,locus:4010713637;,locus:4010713639; AT2G20595,AT2G20618,AT2G20605,AT2G20619 Plant thionin family protein NA NA NA NA NA NA NA ENOG411EJKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EJKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: clavata3 esr-related NA NA NA NA NA NA NA ENOG411EJKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative gypsy type transposon NA NA NA NA NA NA NA ENOG411EJKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZ19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like Nodulin-like family protein, expressed (Os10g0169900 protein),Os03g0682100 protein Q7XGH1,Q7Y003 Q7XGH1_ORYSJ,Q7Y003_ORYSJ Os10g0169900 LOC_Os10g08850 OsJ_30845 OSJNBb0081F12.22 OSNPB_100169900,OSJNBb0070O09.5 Os03g0682100 OsJ_10866 OSNPB_030682100 ENOG411DS3S F15H11.2,F26K24.17 Q944J9,Q9S791,Q9SF11,F4I4N5,A0A1I9LT91,A0A1I9LT89,F4I4N4,F4IPL2 Q944J9_ARATH,Q9S791_ARATH,Q9SF11_ARATH,F4I4N5_ARATH,A0A1I9LT91_ARATH,A0A1I9LT89_ARATH,F4I4N4_ARATH,F4IPL2_ARATH AT3g11880/F26K24_17,AT1G70770 protein (At1g70770) (F15H11.2 protein) (Uncharacterized protein At1g70770) (Uncharacterized protein F5A18.5),F26K24.17 protein,Uncharacterized protein 49597,66865,51415,61395,37688,35345,66672,18023 AT3g11880/F26K24_17,AT1G70770 protein (At1g70770) (F15H11.2 protein) (Uncharacterized protein At1g70770) (Uncharacterized protein F5A18.5),F26K24.17 protein,Uncharacterized protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729],membrane [GO:0016020]; plasma membrane [GO:0005886] locus:2081566;,locus:2013955;,locus:2201245;,locus:2060969; AT3G11880,AT1G70770,AT1G23170,AT2G18070 Uncharacterised conserved protein (DUF2359) Os01g0128400 protein,Os01g0128400 protein (Fragment) Q9LGA3,A0A0P0UXI2 Q9LGA3_ORYSJ,A0A0P0UXI2_ORYSJ Os01g0128400 OsJ_00228 OSNPB_010128400 P0408F06.4,Os01g0128400 OSNPB_010128400 ENOG411E5H3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0236000 protein Q5NB88 Q5NB88_ORYSJ Os01g0236000 OSNPB_010236000 P0708G02.18 ENOG411E5H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0215200 protein A0A0P0XCX3 A0A0P0XCX3_ORYSJ Os08g0215200 OSNPB_080215200 ENOG411E5H9 ERF118 Q9CA27 EF118_ARATH Ethylene-responsive transcription factor ERF118 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 35569 Ethylene-responsive transcription factor ERF118 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2201282; AT1G68550 Transcription factor NA NA NA NA NA NA NA ENOG411E5HV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0018M05.6 protein (OSJNBb0004A17.21 protein) (Os04g0674000 protein) (cDNA clone:J023088F18, full insert sequence),Os04g0674000 protein (Fragment) Q7XQA2,A0A0P0WGD1 Q7XQA2_ORYSJ,A0A0P0WGD1_ORYSJ Os04g0674000 OSJNBb0004A17.21 OSJNBa0018M05.6 OSNPB_040674000,Os04g0674000 OSNPB_040674000 ENOG411E5HW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os07g0542900 protein (Putative phytocyanin) Q6Z5B9 Q6Z5B9_ORYSJ OJ1729_E01.16 Os07g0542900 OSNPB_070542900 ENOG411EMKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stores iron in a soluble non-toxic readily available form. Important for iron homeostasis (By similarity) NA NA NA NA NA NA NA ENOG411EMKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stores iron in a soluble non-toxic readily available form. Important for iron homeostasis (By similarity) NA NA NA NA NA NA NA ENOG411EMKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mitochondrial import receptor subunit TOM22 homolog 2-like NA NA NA NA NA NA NA ENOG411DXAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF593 Expressed protein (Os03g0164800 protein) Q8S5U4 Q8S5U4_ORYSJ Os03g0164800 LOC_Os03g06890 OJ1123F12.6 OsJ_09533 OSNPB_030164800 ENOG411DXAM ERG O82653 ERG_ARATH GTP-binding protein ERG FUNCTION: Has a crucial role in plant growth and development, possibly by influencing mitochondrial division. 49671 GTP-binding protein ERG cytosol [GO:0005829]; GTP binding [GO:0005525]; RNA binding [GO:0003723] locus:2015771; AT1G30960 GTP-binding protein Os08g0207600 protein (Putative GTP-binding protein ERG),Os08g0207600 protein Q6ZJ99,A0A0P0XCV3 Q6ZJ99_ORYSJ,A0A0P0XCV3_ORYSJ OJ1734_E04.12 Os08g0207600 OSNPB_080207600,Os08g0207600 OSNPB_080207600 ENOG411DXAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Probable glucuronosyltransferase Os01g0926400 (EC 2.4.-.-) (OsGT47D),Os01g0926400 protein (Fragment) Q8S1X9,A0A0P0VC96 GT13_ORYSJ,A0A0P0VC96_ORYSJ Os01g0926400 LOC_Os01g70180 OSJNBa0093F16.16 P0482D04.15,Os01g0926400 OSNPB_010926400 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411DXAJ IRK Q9LY03 IRK_ARATH Probable LRR receptor-like serine/threonine-protein kinase IRK (EC 2.7.11.1) (Inflorescence and root apices receptor-like kinase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|Ref.1}. 2.7.11.1 103854 Probable LRR receptor-like serine/threonine-protein kinase IRK (EC 2.7.11.1) (Inflorescence and root apices receptor-like kinase) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Highly expressed in root tips, shoot apices and developing flowers. {ECO:0000269|Ref.1}. locus:2102499; AT3G56370 probably inactive leucine-rich repeat receptor-like protein kinase Leucine-rich repeat transmembrane protein kinase, putative, expressed (Os03g0335500 protein) Q10LT7 Q10LT7_ORYSJ Os03g0335500 LOC_Os03g21730 Os03g0335500 OSNPB_030335500 ENOG411DXAI RUS3 Q84JB8,A0A1P8AM33,A0A1P8AM66 RUS3_ARATH,A0A1P8AM33_ARATH,A0A1P8AM66_ARATH Protein root UVB sensitive 3,Uncharacterized protein 48613,42378,33703 Protein root UVB sensitive 3,Uncharacterized protein integral component of membrane [GO:0016021] locus:2023885; AT1G13770 Vitamin B6 photo-protection and homoeostasis Os03g0213700 protein A0A0N7KGT9 A0A0N7KGT9_ORYSJ Os03g0213700 OSNPB_030213700 ENOG411DXAH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0480000 protein,Os11g0687900 protein Q0ISQ7,B9G596 Q0ISQ7_ORYSJ,B9G596_ORYSJ Os11g0480000 OSNPB_110480000,Os11g0687900 OsJ_30468 OSNPB_110687900 ENOG411DXAW NDT1 O22261 NDT1_ARATH Nicotinamide adenine dinucleotide transporter 1, chloroplastic (AtNDT1) (NAD(+) transporter 1) FUNCTION: Mediates the NAD(+) import into chloroplast. Favors the NAD(+)(in)/ADP or AMP(out) antiport exchange, but is also able to catalyze a low unidirectional transport (uniport) of NAD(+). Transports NAD(+), nicotinic acid adenine dinucleotide, nicotinamide mononucleotide, nicotinic acid mononucleotide, FAD, FMN, TTP, TDP, TMP, UTP, UDP, UMP, CTP, CDP, CMP, GTP, GDP, GMP, 3'-AMP, ATP, ADP, AND AMP, has low transport activity with cAMP, pyrophosphate, NADH and alpha-NAD(+), and has no activity with NADP(+), NADPH, nicotinamide, nicotinic acid, adenosine, thiamine mono- or diphosphate, inorganic phosphate, CoA, folate, NaCl, malate, malonate, citrate, fumarate, aspartate, glutamate, S-adenosylmethionine, lysine, arginine, and ornithine. {ECO:0000269|PubMed:16055441, ECO:0000269|PubMed:19745225}. MISCELLANEOUS: Appears to be a chloroplast envelope-located membrane protein lacking an N-terminal-located transit peptide. 33883 Nicotinamide adenine dinucleotide transporter 1, chloroplastic (AtNDT1) (NAD(+) transporter 1) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; antiporter activity [GO:0015297]; NAD transporter activity [GO:0051724]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839]; NAD transmembrane transport [GO:0035352]; NAD transport [GO:0043132] TISSUE SPECIFICITY: Highly expressed in young leaf mesophyll cells, root tips and at the branches of adventitious roots. Low expression in all flower tissues and not detected in siliques and seeds. {ECO:0000269|PubMed:19745225}. locus:2062002; AT2G47490 mitochondrial substrate carrier family protein Os05g0357200 protein (Putative mitochondrial carrier protein) (cDNA clone:001-125-G09, full insert sequence) Q5W6Y0 Q5W6Y0_ORYSJ Os05g0357200 Os05g0357200 OJ1045_C06.1 OSJNBa0036C12.17 OSNPB_050357200 ENOG411DXAV Q9MAA2 AT74_ARATH Phosphoglycerate mutase-like protein AT74 (At-74) FUNCTION: Phosphoglycerate mutase-like protein lacking PGM activity. May play a role in carbohydrates metabolism. {ECO:0000269|PubMed:15737980}. 36880 Phosphoglycerate mutase-like protein AT74 (At-74) cytosol [GO:0005829]; phosphatase activity [GO:0016791]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:15737980}. locus:2096249; AT3G05170 phosphoglycerate Os05g0141700 protein Q75KG7 Q75KG7_ORYSJ Os05g0141700 Os05g0141700 OJ1264_A04.1 OJ1489_G03.9 OSNPB_050141700 ENOG411DXAU PII-2 Q5PP26,Q9CA41,F4JA38 PII2_ARATH,Q9CA41_ARATH,F4JA38_ARATH Piriformospora indica-insensitive protein 2,At1g68780 (At1g68780/F14K14_11) (RNI-like superfamily protein) (Uncharacterized protein F14K14.11),Leucine-rich repeat (LRR) family protein Defect in symbiotic interaction with the endophytic fungus Piriformospora indica. Insensitive to growth stimulation of beneficial fungal interactor-R. Oelmuller-2007 FUNCTION: Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica. {ECO:0000269|PubMed:17397506}. MISCELLANEOUS: Loss-of-function mutants do not show any induction of At5g16590, another leucine-rich repeat protein located in plasma membrane microdomains. 47088,48458,52735 Piriformospora indica-insensitive protein 2,At1g68780 (At1g68780/F14K14_11) (RNI-like superfamily protein) (Uncharacterized protein F14K14.11),Leucine-rich repeat (LRR) family protein chloroplast [GO:0009507]; plasma membrane [GO:0005886]; response to symbiotic fungus [GO:0009610]; symbiosis, encompassing mutualism through parasitism [GO:0044403] locus:2031880;,locus:2012433;,locus:2102330; AT1G13230,AT1G68780,AT3G25670 Piriformospora indica-insensitive protein Os01g0110800 protein (Putative disease resistance protein) (cDNA clone:J013002E08, full insert sequence) Q657S8 Q657S8_ORYSJ Os01g0110800 Os01g0110800 OsJ_00086 OSNPB_010110800 P0439B06.16 ENOG411DXAT OMR1 Q9ZSS6 THD1_ARATH Threonine dehydratase biosynthetic, chloroplastic (EC 4.3.1.19) (Threonine deaminase) (TD) FUNCTION: Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction. The first step is a dehydration of threonine, followed by rehydration and liberation of ammonia. PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from L-threonine: step 1/1. ARA:AT3G10050-MONOMER; 4.3.1.19 64635 Threonine dehydratase biosynthetic, chloroplastic (EC 4.3.1.19) (Threonine deaminase) (TD) chloroplast [GO:0009507]; L-threonine ammonia-lyase activity [GO:0004794]; pyridoxal phosphate binding [GO:0030170]; isoleucine biosynthetic process [GO:0009097] locus:2100078; AT3G10050 threonine dehydratase biosynthetic Threonine dehydratase (EC 4.3.1.19) (Threonine deaminase) Q8W314 Q8W314_ORYSJ OSJNBa0014G15.29 Os03g0713000 OSNPB_030713000 ENOG411DXAS Q3E9F0 PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475 57288 Pentatricopeptide repeat-containing protein At5g18475 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:1006230454; AT5G18475 Pentatricopeptide repeat-containing protein Fertility restorer homologue A-like (Os02g0468500 protein) Q6K8I3 Q6K8I3_ORYSJ Os02g0468500 OJ1057_F01.10 OsJ_06677 OSNPB_020468500 ENOG411DXAR F21O3.6 Q9SRT1 Q9SRT1_ARATH F21O3.6 protein (Sulfate/thiosulfate import ATP-binding protein, putative (DUF506)) (Uncharacterized protein At3g07350) 33118 F21O3.6 protein (Sulfate/thiosulfate import ATP-binding protein, putative (DUF506)) (Uncharacterized protein At3g07350) ATP binding [GO:0005524] locus:2079691; AT3G07350 Protein of unknown function (DUF506) Os11g0437600 protein (cDNA, clone: J065181M02, full insert sequence),Os01g0915000 protein (cDNA clone:002-135-B11, full insert sequence),Os11g0437100 protein Q2R5G9,Q8LQF7,A0A0P0Y1W3 Q2R5G9_ORYSJ,Q8LQF7_ORYSJ,A0A0P0Y1W3_ORYSJ LOC_Os11g25040 Os11g0437600 OSNPB_110437600,Os01g0915000 Os01g0915000 OSNPB_010915000 P0004D12.15,Os11g0437100 OSNPB_110437100 ENOG411DXAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glucan 13-beta-glucosidase 'putative glucan 1,3-beta-glucosidase (Os05g0244500 protein),Cellulase containing protein, expressed (Os10g0370500 protein) (Putative Glucan 1,3-beta-glucosidase) (cDNA clone:J013001E03, full insert sequence),Cellulase containing protein, expressed (Os10g0370800 protein) (Putative Glucan 1,3-beta-glucosidase),Os10g0370800 protein,Os05g0244500 protein (Fragment),Os08g0484100 protein Q5W708,Q8RU06,Q8RU51,A0A0P0XTS7,A0A0P0WJU5,A0A0P0XHV0 Q5W708_ORYSJ,Q8RU06_ORYSJ,Q8RU51_ORYSJ,A0A0P0XTS7_ORYSJ,A0A0P0WJU5_ORYSJ,A0A0P0XHV0_ORYSJ Os05g0244500 Os05g0244500 OSJNBa0037H06.1 OSNPB_050244500,OJ1208D02.5 LOC_Os10g22520 Os10g0370500 OJ1003C07.1 OSNPB_100370500,OJ1208D02.11 LOC_Os10g22570 Os10g0370800 OSNPB_100370800,Os10g0370800 OSNPB_100370800,Os05g0244500 OSNPB_050244500,Os08g0484100 OSNPB_080484100 ENOG411DXAP RPN9A,RPN9B,MRA19.2 Q8RWF0,Q8GYA6,A0A1P8B6G3,F4KEK8 PS13A_ARATH,PS13B_ARATH,A0A1P8B6G3_ARATH,F4KEK8_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog A (26S proteasome regulatory subunit RPN9a) (AtRNP9a) (26S proteasome regulatory subunit S11 homolog A),26S proteasome non-ATPase regulatory subunit 13 homolog B (26S proteasome regulatory subunit RPN9b) (AtRNP9b) (26S proteasome regulatory subunit S11 homolog B),Proteasome component (PCI) domain protein FUNCTION: Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 44168,44021,50188,40141 26S proteasome non-ATPase regulatory subunit 13 homolog A (26S proteasome regulatory subunit RPN9a) (AtRNP9a) (26S proteasome regulatory subunit S11 homolog A),26S proteasome non-ATPase regulatory subunit 13 homolog B (26S proteasome regulatory subunit RPN9b) (AtRNP9b) (26S proteasome regulatory subunit S11 homolog B),Proteasome component (PCI) domain protein cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, lid subcomplex [GO:0008541]; structural molecule activity [GO:0005198]; proteasome assembly [GO:0043248]; ubiquitin-dependent protein catabolic process [GO:0006511],cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome regulatory particle, lid subcomplex [GO:0008541]; structural molecule activity [GO:0005198]; proteasome assembly [GO:0043248]; protein catabolic process [GO:0030163]; ubiquitin-dependent protein catabolic process [GO:0006511],proteasome complex [GO:0000502] TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. locus:2171998;,locus:504955552; AT5G45620,AT4G19006 26S proteasome Os03g0214600 protein (PCI domain containing protein, expressed) (cDNA clone:J013000H02, full insert sequence),Os01g0511300 protein (Putative 26S proteasome subunit RPN9b),Os03g0214600 protein (Fragment) Q10Q05,Q94E72,A0A0P0VUN4 Q10Q05_ORYSJ,Q94E72_ORYSJ,A0A0P0VUN4_ORYSJ LOC_Os03g11570 Os03g0214600 OsJ_09909 OSNPB_030214600,Os01g0511300 OsJ_01974 OSJNBa0054L14.8 OSNPB_010511300 P0520B06.34,Os03g0214600 OSNPB_030214600 ENOG411DXAZ SMB Q9MA17 SMB_ARATH Protein SOMBRERO (NAC domain-containing protein 33) (ANAC033) DISRUPTION PHENOTYPE: Additional root cap layers; increased number of columella (COL) and lateral root cap (LRC) cell layers in the mature embryo and in the postembryonic state. Lateral cap cells continue to divide and fail to detach from the root. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. Additional columella root cap and lateral root cap cell layers in the mature embryo and postembryonic root development. Root meristem length and cell number is similar to WT. Extra layer of small stem-cell-like cells below the columella and lateral root cap stem cells.,Delayed maturation and shedding of lateral root cap cells. The root cap extends into the differentiation zone.,same as smb-3 single mutant,Root cap cells appear as a mass lacking uniform morphology. Cells can be highly elongated and twisted. Cells fail to stop elongation and to adopt the rigid rectangular morphology of COL cells. When compared with smb-3 the triple mutant has thesame number of complete LRC layers and the appearance of the cells in those layers closely resembles that in smb-3. However partial remains of older LRC layers remain attached to the meristem in the triple mutant giving it a messy appearance. Remains of old LRC cap layers can be found still attached to the root along its whole length.,Same as smb-3 single mutant phenotype Abnormal root cap cell morphology-B. Scheres-2008 FUNCTION: Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. 42382 Protein SOMBRERO (NAC domain-containing protein 33) (ANAC033) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of cell fate commitment [GO:0010455]; regionalization [GO:0003002]; regulation of transcription, DNA-templated [GO:0006355]; root cap development [GO:0048829]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. TISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. locus:2019833; AT1G79580 (NAC) domain-containing protein NAC domain-containing protein 76 (ONAC076) (OsNAC7),Os06g0530400 protein Q5Z6B6,A0A0P0WXJ0 NAC76_ORYSJ,A0A0P0WXJ0_ORYSJ NAC076 NAC7 Os06g0530400 LOC_Os06g33940 P0410C01.5-1 P0438E12.26-1,Os06g0530400 OSNPB_060530400 FUNCTION: Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. ENOG411DXA7 GFS12 F4JY12 GFS12_ARATH Protein GFS12 (EC 2.7.10.-) (BEACH domain-containing protein D) (BEACH-domain homolog D) (GREEN FLUORESCENT SEED 12) DISRUPTION PHENOTYPE: No visible phenotype. Accumulation of unprocessed 12S globulin in the seeds. {ECO:0000269|PubMed:25618824}. FUNCTION: May act predominantly to suppress BCHC1, which itself is a negative factor in protein storage vacuole (PSV) trafficking regulation and plant effector triggered immunity (ETI). Required for ETI, but not for cell death. {ECO:0000269|PubMed:25618824}. 2.7.10.- 183399 Protein GFS12 (EC 2.7.10.-) (BEACH domain-containing protein D) (BEACH-domain homolog D) (GREEN FLUORESCENT SEED 12) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; defense response to bacterium, incompatible interaction [GO:0009816]; protein targeting to vacuole [GO:0006623] TISSUE SPECIFICITY: Weakly expressed in the cotyledons of germinating seedlings. Restricted to the vascular tissues of cotyledons. Detected in root tips, apical meristem, young flower buds and receptacles. {ECO:0000269|PubMed:25618824}. locus:1006230455; AT5G18525 Beige/BEACH domain Os01g0327600 protein Q0JN54,A0A0P0V1T8 Q0JN54_ORYSJ,A0A0P0V1T8_ORYSJ Os01g0327600 Os01g0327600 OSNPB_010327600,Os01g0327600 OSNPB_010327600 ENOG411DXA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0169100 protein B9ET27 B9ET27_ORYSJ Os01g0169100 OsJ_00532 OSNPB_010169100 ENOG411DXA5 NAA20 Q8LGI8 NAA20_ARATH N-terminal acetyltransferase B complex catalytic subunit NAA20 (EC 2.3.1.254) (NatB N-alpha-terminal acetylation complex catalytic subunit) DISRUPTION PHENOTYPE: Reticulated leaves, early flowering and aborted or unfertilized ovules in siliques. {ECO:0000269|PubMed:24244708}. FUNCTION: Catalytic subunit of the NatB N-alpha-acetyltransferase complex. Involved in plant immunity through the regulation of SNC1 stability (PubMed:25966763). {ECO:0000269|PubMed:25966763}. ARA:AT1G03150-MONOMER; 2.3.1.254 20395 N-terminal acetyltransferase B complex catalytic subunit NAA20 (EC 2.3.1.254) (NatB N-alpha-terminal acetylation complex catalytic subunit) NatB complex [GO:0031416]; peptide alpha-N-acetyltransferase activity [GO:0004596]; N-terminal peptidyl-methionine acetylation [GO:0017196] locus:2007584; AT1G03150 FR47-like protein N-acetyltransferase 5, putative, expressed (Os03g0699400 protein) (Silencing group B protein) (cDNA clone:J023009F11, full insert sequence) Q851S9 Q851S9_ORYSJ LOC_Os03g49230 Os03g0699400 OsJ_12228 OSJNBb0017F17.13 OSNPB_030699400 ENOG411DXA2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3'5'- phosphodiester. May act as a RNA ligase with broad substrate specificity and may function toward other RNAs (By similarity) NA NA NA NA NA NA NA ENOG411DXA1 FIB3,MED36A,MED36B Q9FHB3,Q94AH9,Q9FEF8 FBRL3_ARATH,MD36A_ARATH,MD36B_ARATH Putative rRNA 2'-O-methyltransferase fibrillarin 3 (EC 2.1.1.-) (Fibrillarin-like protein 3) (Histone-glutamine methyltransferase),Mediator of RNA polymerase II transcription subunit 36a (Fibrillarin-like protein 2) (Histone-glutamine methyltransferase) (rRNA 2'-O-methyltransferase fibrillarin 2) (EC 2.1.1.-),Probable mediator of RNA polymerase II transcription subunit 36b (Histone-glutamine methyltransferase) (SKP1-interacting partner 7) (rRNA 2'-O-methyltransferase fibrillarin 1) (EC 2.1.1.-) FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins. Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Also acts as a protein methyltransferase by mediating methylation of 'Gln-105' of histone H2A (H2AQ105me), a modification that impairs binding of the FACT complex and is specifically present at 35S ribosomal DNA locus (By similarity). {ECO:0000250}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors. {ECO:0000269|PubMed:10829025, ECO:0000269|PubMed:21785141}.; FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins. Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Interacts with RNAs of different lengths and types including dsRNAs and ssRNAs, rRNA, snoRNA, snRNA, siRNA and viral RNAs (PubMed:10829025). Also acts as a protein methyltransferase by mediating methylation of 'Gln-105' of histone H2A (H2AQ105me), a modification that impairs binding of the FACT complex and is specifically present at 35S ribosomal DNA locus (By similarity). {ECO:0000250, ECO:0000269|PubMed:10829025}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}.; FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins. Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (PubMed:10829025). Also acts as a protein methyltransferase by mediating methylation of 'Gln-105' of histone H2A (H2AQ105me), a modification that impairs binding of the FACT complex and is specifically present at 35S ribosomal DNA locus (By similarity). {ECO:0000250, ECO:0000269|PubMed:10829025}. R-ATH-6791226; 2.1.1.- 31706,33653,32830 Putative rRNA 2'-O-methyltransferase fibrillarin 3 (EC 2.1.1.-) (Fibrillarin-like protein 3) (Histone-glutamine methyltransferase),Mediator of RNA polymerase II transcription subunit 36a (Fibrillarin-like protein 2) (Histone-glutamine methyltransferase) (rRNA 2'-O-methyltransferase fibrillarin 2) (EC 2.1.1.-),Probable mediator of RNA polymerase II transcription subunit 36b (Histone-glutamine methyltransferase) (SKP1-interacting partner 7) (rRNA 2'-O-methyltransferase fibrillarin 1) (EC 2.1.1.-) box C/D snoRNP complex [GO:0031428]; Cajal body [GO:0015030]; small-subunit processome [GO:0032040]; histone-glutamine methyltransferase activity [GO:1990259]; RNA binding [GO:0003723]; rRNA methyltransferase activity [GO:0008649]; box C/D snoRNA 3'-end processing [GO:0000494]; histone glutamine methylation [GO:1990258]; rRNA methylation [GO:0031167]; tRNA processing [GO:0008033],box C/D snoRNP complex [GO:0031428]; Cajal body [GO:0015030]; mediator complex [GO:0016592]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; histone-glutamine methyltransferase activity [GO:1990259]; RNA binding [GO:0003723]; rRNA methyltransferase activity [GO:0008649]; snoRNA binding [GO:0030515]; box C/D snoRNA 3'-end processing [GO:0000494]; histone glutamine methylation [GO:1990258]; regulation of transcription, DNA-templated [GO:0006355]; rRNA methylation [GO:0031167]; transcription, DNA-templated [GO:0006351]; tRNA processing [GO:0008033],box C/D snoRNP complex [GO:0031428]; Cajal body [GO:0015030]; membrane [GO:0016020]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; histone-glutamine methyltransferase activity [GO:1990259]; RNA binding [GO:0003723]; rRNA methyltransferase activity [GO:0008649]; snoRNA binding [GO:0030515]; box C/D snoRNA 3'-end processing [GO:0000494]; histone glutamine methylation [GO:1990258]; regulation of transcription, DNA-templated [GO:0006355]; rRNA methylation [GO:0031167]; transcription, DNA-templated [GO:0006351]; tRNA processing [GO:0008033] TISSUE SPECIFICITY: Not detectable by RT-PCR. {ECO:0000269|PubMed:10829025}.,TISSUE SPECIFICITY: Ubiquitously expressed, with higher levels in roots and flowers, and lower levels in siliques. Expression levels decrease during aging. {ECO:0000269|PubMed:10806224, ECO:0000269|PubMed:10829025}.,TISSUE SPECIFICITY: Ubiquitously expressed, with higher levels in roots and flowers, and lower levels in siliques. {ECO:0000269|PubMed:10806224, ECO:0000269|PubMed:10829025}. locus:2156682;,locus:2131386;,locus:2156747; AT5G52490,AT4G25630,AT5G52470 rRNA 2'-O-methyltransferase fibrillarin Os02g0821800 protein (cDNA clone:J033130D23, full insert sequence),Os05g0176000 protein (cDNA, clone: J100055L06, full insert sequence),Os02g0821800 protein B7EUQ4,B7FA85,A0A0N7KGC5 B7EUQ4_ORYSJ,B7FA85_ORYSJ,A0A0N7KGC5_ORYSJ Os02g0821800 OSNPB_020821800,Os05g0176000 OsJ_17309 OSNPB_050176000 ENOG411DXA0 Q9LPR9,A0A1P8AS62,A0A1P8AS58 Q9LPR9_ARATH,A0A1P8AS62_ARATH,A0A1P8AS58_ARATH At1g50440 (F11F12.20 protein) (RING finger family protein) (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein 28785,25434,27115 At1g50440 (F11F12.20 protein) (RING finger family protein) (RING/FYVE/PHD zinc finger superfamily protein),RING/FYVE/PHD zinc finger superfamily protein integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2008056; AT1G50440 zinc finger C3HC4 type family protein Os02g0132300 protein (Zinc finger (C3HC4-type RING finger) protein-like) (cDNA clone:002-119-G09, full insert sequence) (cDNA clone:J023045B03, full insert sequence) (cDNA clone:J033128G16, full insert sequence) Q6ZG80 Q6ZG80_ORYSJ Os02g0132300 Os02g0132300 OJ1007_D04.30 OSNPB_020132300 ENOG411E2UJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 NA NA NA NA NA NA NA ENOG411E2UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0256300 protein (Fragment) A0A0P0V0R0 A0A0P0V0R0_ORYSJ Os01g0256300 OSNPB_010256300 ENOG411E2UH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0325900 protein,Os03g0325700 protein A0A0P0VWY6,A0A0P0VXP7 A0A0P0VWY6_ORYSJ,A0A0P0VXP7_ORYSJ Os03g0325900 OSNPB_030325900,Os03g0325700 OSNPB_030325700 ENOG411E2UB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA t_SNARE NA NA NA NA NA NA NA ENOG411E2UC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain containing protein Os12g0233100 protein (Fragment) C7JA82 C7JA82_ORYSJ Os12g0233100 Os12g0233100 OSNPB_120233100 ENOG411E2UA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heat Shock Protein 23.2 kDa heat shock protein (OsHsp23.2) Q7XUW5 HS232_ORYSJ HSP23.2 Os04g0445100 LOC_Os04g36750 OsJ_14939 OSJNBa0027P08.9 ENOG411E2UF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CASP-like protein Casparian strip membrane protein 1 (OsCASP1) Q7XPU9 CASP1_ORYSJ Os04g0684300 LOC_Os04g58760 OsJ_015951 OSJNBa0088H09.7 FUNCTION: Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity). {ECO:0000250}. ENOG411E2UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA prefoldin subunit NA NA NA NA NA NA NA ENOG411E2UD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) OSJNBa0088I22.3 protein (Os04g0571800 protein) (cDNA clone:006-204-C11, full insert sequence) (cDNA clone:J013030E23, full insert sequence) Q7XU50 Q7XU50_ORYSJ Os04g0571800 Os04g0571800 OsJ_15839 OSJNBa0088I22.3 OSNPB_040571800 ENOG411E2UE MYB111 Q9FJ07 MY111_ARATH Transcription factor MYB111 (Myb-related protein 111) (AtMYB111) (Protein PRODUCTION OF FLAVONOL GLYCOSIDES 3) DISRUPTION PHENOTYPE: Reduced flavonols levels in leaves. The double mutants myb11 myb111 and myb12 myb111 and triple mutant myb11 myb12 myb111 accumulate less flavonols in roots, leaves, stems, inflorescence, and siliques (PubMed:20731781). The triple mutant myb11 myb12 myb111 is impaired in flavonols biosynthesis and exhibits a reduced UV-B tolerance (PubMed:17419845, PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. information not available FUNCTION: Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. 38481 Transcription factor MYB111 (Myb-related protein 111) (AtMYB111) (Protein PRODUCTION OF FLAVONOL GLYCOSIDES 3) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; flavonol biosynthetic process [GO:0051555]; positive regulation of flavonol biosynthetic process [GO:1900386]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to light stimulus [GO:0009416]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in cotyledons. Restricted to the cotyledons and primary leaves. {ECO:0000269|PubMed:17419845}. TISSUE SPECIFICITY: Expressed in seedlings, cotyledons and young leaves. {ECO:0000269|PubMed:17419845}. locus:2155944; AT5G49330 myb domain protein 111 NA NA NA NA NA NA NA ENOG411E2UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os11g0634700 protein A0A0P0Y4I9 A0A0P0Y4I9_ORYSJ Os11g0634700 OSNPB_110634700 ENOG411E2US NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Expressed protein (Os03g0607700 protein) (cDNA clone:001-021-A06, full insert sequence) Q75I55 Q75I55_ORYSJ Os03g0607700 LOC_Os03g41110 Os03g0607700 Os03g41110 OSNPB_030607700 ENOG411E2UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0450600 protein B9FFG0 B9FFG0_ORYSJ Os04g0450600 OsJ_14995 OSNPB_040450600 ENOG411E2UV Q9LTP9 Q9LTP9_ARATH Phosphorylated adapter RNA export-like protein (Uncharacterized protein At3g20430) 29639 Phosphorylated adapter RNA export-like protein (Uncharacterized protein At3g20430) locus:2092324; AT3G20430 PHAX RNA-binding domain Os01g0559200 protein (cDNA clone:J033099D01, full insert sequence) Q5JKR0 Q5JKR0_ORYSJ Os01g0559200 B1064G04.19 B1144D11.41 OSNPB_010559200 ENOG411E2UU BHLH93 Q9LSL1 BH093_ARATH Transcription factor bHLH93 (Basic helix-loop-helix protein 93) (AtbHLH93) (bHLH 93) (Transcription factor EN 47) (bHLH transcription factor bHLH093) FUNCTION: Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. 39484 Transcription factor bHLH93 (Basic helix-loop-helix protein 93) (AtbHLH93) (bHLH 93) (Transcription factor EN 47) (bHLH transcription factor bHLH093) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; gibberellin catabolic process [GO:0045487]; multicellular organism development [GO:0007275]; regulation of gibberellin biosynthetic process [GO:0010371]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. locus:2155725; AT5G65640 Transcription factor NA NA NA NA NA NA NA ENOG411E2U8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HNHc HNH endonuclease family protein, expressed (Os10g0335200 protein) (Putative HNH endonuclease) (cDNA clone:001-125-C06, full insert sequence) (cDNA clone:J033073J04, full insert sequence),Os04g0478200 protein Q8LMG0,A0A0P0WBW5 Q8LMG0_ORYSJ,A0A0P0WBW5_ORYSJ LOC_Os10g18890 Os10g0335200 OJ1325D05.10 OJA1325D05.4 OsJ_31114 OSNPB_100335200,Os04g0478200 OSNPB_040478200 ENOG411E2U2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411E2U3 CML18 Q9M8U1 CML18_ARATH Probable calcium-binding protein CML18 (Calmodulin-15) (AtCaM-15) (Calmodulin-like protein 18) FUNCTION: Potential calcium sensor that modulates ion selectivity of NHX1. {ECO:0000269|PubMed:16249341}. 18090 Probable calcium-binding protein CML18 (Calmodulin-15) (AtCaM-15) (Calmodulin-like protein 18) plant-type vacuole [GO:0000325]; calcium ion binding [GO:0005509]; regulation of ion transport [GO:0043269] locus:2075427; AT3G03000 Pfam:efhand NA NA NA NA NA NA NA ENOG411E2U0 Q6NMK2 Q6NMK2_ARATH At5g49400 (Uncharacterized protein At5g49400) (Zinc knuckle (CCHC-type) family protein) 31086 At5g49400 (Uncharacterized protein At5g49400) (Zinc knuckle (CCHC-type) family protein) nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2158029; AT5G49400 ZnF_C2HC Os11g0199600 protein (Transposable element protein, putative) (Zinc knuckle family protein, expressed) (cDNA clone:002-188-E09, full insert sequence) Q53LQ3 Q53LQ3_ORYSJ LOC_Os11g09310 Os11g0199600 OsJ_33282 OSNPB_110199600 ENOG411E2U1 RPS15A,RPS15E,RPS15B,RPS15D,RPS15C,F14M2.2,RPS15 Q08112,Q9FIX6,Q9FY66,Q9FY64,Q9FY65,Q9LD48,F4I472,A8MQ96 RS151_ARATH,RS155_ARATH,RS152_ARATH,RS154_ARATH,RS153_ARATH,Q9LD48_ARATH,F4I472_ARATH,A8MQ96_ARATH 40S ribosomal protein S15-1,40S ribosomal protein S15-5,40S ribosomal protein S15-2,40S ribosomal protein S15-4,40S ribosomal protein S15-3,40S ribosomal protein S15 (F14M2.2 protein) (Ribosomal protein S19 family protein) (Uncharacterized protein T3M13.13),Cytosolic ribosomal protein S15,Ribosomal protein S19 family protein R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 17129,16809,17140,17072,16750,8139,17058,13412 40S ribosomal protein S15-1,40S ribosomal protein S15-5,40S ribosomal protein S15-2,40S ribosomal protein S15-4,40S ribosomal protein S15-3,40S ribosomal protein S15 (F14M2.2 protein) (Ribosomal protein S19 family protein) (Uncharacterized protein T3M13.13),Cytosolic ribosomal protein S15,Ribosomal protein S19 family protein cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],small ribosomal subunit [GO:0015935]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2018324;,locus:2158382;,locus:2184847;,locus:2184772;,locus:2184752;,locus:2012638; AT1G04270,AT5G43640,AT5G09490,AT5G09510,AT5G09500,AT1G33850 40s ribosomal protein 40S ribosomal protein S15,40S ribosomal protein S15, putative, expressed (Os03g0798600 protein) (Putative 40S ribosomal protein S15) (Putative ribosomal protein S15) (cDNA clone:J033079G18, full insert sequence) P31674,Q851P5 RS15_ORYSJ,Q851P5_ORYSJ RPS15 Os07g0184300 LOC_Os07g08660 OJ1046_F10.119,OSJNBa0052F07.28 OSJNBa0094F01.1 LOC_Os03g58430 Os03g0798600 OSNPB_030798600 ENOG411E2U6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2U7 AGL18 Q9M2K8,A0A1I9LQD5 AGL18_ARATH,A0A1I9LQD5_ARATH Agamous-like MADS-box protein AGL18,AGAMOUS-like 18 DISRUPTION PHENOTYPE: Altered expression of MIKC* MADS-controlled genes during pollen maturation. Early flowering under short-days conditions (SD) when combined with AGL15 disruption. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. FUNCTION: Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. 28874,25777 Agamous-like MADS-box protein AGL18,AGAMOUS-like 18 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; negative regulation of flower development [GO:0009910]; negative regulation of short-day photoperiodism, flowering [GO:0048577]; pollen development [GO:0009555]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During the reproductive phase, accumulates in immature buds and at the base of the floral organs, and in the receptacle, ovules, anther filaments, and stigma and style of open flowers. Later observed in sporogenous tissue of anthers. During male gametogenesis, expressed in the microspores before they separate from each other. Later present at high levels within pollen grains up to stage 13 of flower development, when anthers dehisce. During carpel development, first detected in developing ovules. After fertilization, confined to globular structures or nodules of proliferating free nuclear endosperm required for embryo development. Disappears from the endosperm at to the heart stage of embryo development, when very little nuclear endosperm remains. Never detected in developing embryos at any stage. In young seedlings, present everywhere except in a portion of the hypocotyl and in newly emerging leaves. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:17521410}. TISSUE SPECIFICITY: Mostly expressed in pollen, roots, flowers and siliques, and to a lower extent, in stems and leaves. Expressed in the endosperm and in developing male and female gametophytes. Also present in seedlings. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:16028119, ECO:0000269|PubMed:17521410}. locus:2082613; AT3G57390 K-box region NA NA NA NA NA NA NA ENOG411E2U5 Q8GWN1 Q8GWN1_ARATH Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At1g03650) (Uncharacterized protein At1g03650/F21B7_10) 17843 Acyl-CoA N-acyltransferases (NAT) superfamily protein (Uncharacterized protein At1g03650) (Uncharacterized protein At1g03650/F21B7_10) protein acetyltransferase complex [GO:0031248]; peptide alpha-N-acetyltransferase activity [GO:0004596]; N-terminal protein amino acid acetylation [GO:0006474] locus:2020718; AT1G03650 FR47-like protein NA NA NA NA NA NA NA ENOG411E05M Q9LSC4,A0A1I9LM41,A0A1I9LM40,A0A178VFN4 Q9LSC4_ARATH,A0A1I9LM41_ARATH,A0A1I9LM40_ARATH,A0A178VFN4_ARATH AT3G27110 protein (AT3g27110/MOJ10_21) (Peptidase family M48 family protein),Peptidase family M48 family protein 37948,31087,28799,32831 AT3G27110 protein (AT3g27110/MOJ10_21) (Peptidase family M48 family protein),Peptidase family M48 family protein metalloendopeptidase activity [GO:0004222]; CAAX-box protein processing [GO:0071586],metalloendopeptidase activity [GO:0004222] locus:2092010; AT3G27110 peptidase Os01g0970700 protein (Peptidase M48-like),Os01g0970700 protein (Peptidase M48-like) (cDNA clone:J013043D06, full insert sequence) Q5JMD7,Q94DI2 Q5JMD7_ORYSJ,Q94DI2_ORYSJ P0518C01.4-2 Os01g0970700 OSNPB_010970700,P0518C01.4-1 Os01g0970700 OsJ_25586 OSNPB_010970700 ENOG411E05N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA von Willebrand factor type A domain Os03g0403600 protein (Fragment),Os12g0431700 protein,Os01g0640200 protein Q0DR99,A0A0N7KTY9,A0A0P0V5S3 Q0DR99_ORYSJ,A0A0N7KTY9_ORYSJ,A0A0P0V5S3_ORYSJ Os03g0403600 OSNPB_030403600,Os12g0431700 OSNPB_120431700,Os01g0640200 OSNPB_010640200 ENOG411E05H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) (Fragment) Q6Z481,Q6Z478,A0A0N7KNH8 Q6Z481_ORYSJ,Q6Z478_ORYSJ,A0A0N7KNH8_ORYSJ Os07g0503300 Os07g0503300 OsJ_24364 OSNPB_070503300 P0430F03.25,Os07g0503500 OsJ_24365 OSNPB_070503500 P0430F03.28,Os07g0503500 OSNPB_070503500 ENOG411E05I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E05F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reticulon Reticulon-like protein,Reticulon-like protein (Fragment) Q0JDW7,A0A0N7KIX0 Q0JDW7_ORYSJ,A0A0N7KIX0_ORYSJ Os04g0367400 Os04g0367400 OsJ_14443 OSNPB_040367400,Os04g0367400 OSNPB_040367400 ENOG411E05A MTERF8 Q9FK23 MTEF8_ARATH Transcription termination factor MTERF8, chloroplastic (Mitochondrial transcription termination factor 8) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15) FUNCTION: Transcription termination factor that is transcriptionally active in chloroplasts. {ECO:0000269|PubMed:16326926}. 56350 Transcription termination factor MTERF8, chloroplastic (Mitochondrial transcription termination factor 8) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15) chloroplast [GO:0009507]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2153433; AT5G54180 mTERF NA NA NA NA NA NA NA ENOG411E05U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Cyclin-dependent kinase C-3 (CDKC;3) (EC 2.7.11.22) (EC 2.7.11.23),Os08g0453800 protein Q6ZAG3,A0A0P0XGP8 CDKC3_ORYSJ,A0A0P0XGP8_ORYSJ CDKC-1 Os08g0453800 LOC_Os08g35220 OsJ_026440 P0048G02.5,Os08g0453800 OSNPB_080453800 ENOG411E05V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein AOBP-like protein (Os07g0685000 protein) (Putative ascorbate oxidase promoter-binding protein AOBP) (cDNA clone:001-032-E07, full insert sequence) Q84PD2 Q84PD2_ORYSJ Os07g0685000 Os07g0685000 OsJ_25624 OSJNBa0060O17.33 OSNPB_070685000 ENOG411E05W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein NA NA NA NA NA NA NA ENOG411E05P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0571300 protein (cDNA clone:J023005F03, full insert sequence),Os10g0116200 protein (Fragment),Os05g0571300 protein,Os05g0571400 protein Q65XL3,A0A0P0XR05,A0A0P0WR71,A0A0P0WR18 Q65XL3_ORYSJ,A0A0P0XR05_ORYSJ,A0A0P0WR71_ORYSJ,A0A0P0WR18_ORYSJ Os05g0571300 OJ1735_C10.5 OSNPB_050571300,Os10g0116200 OSNPB_100116200,Os05g0571300 OSNPB_050571300,Os05g0571400 OSNPB_050571400 ENOG411E05Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Sugar transport protein MST2 (Monosaccharide transporter 2) (OsMST2) (Sugar:proton symporter MST2) Q851G4 MST2_ORYSJ MST2 Os03g0594400 LOC_Os03g39710 OsJ_11618 OSJNBb0042N11.24 FUNCTION: Mediates active uptake of hexoses by sugar:proton symport. Can transport glucose. {ECO:0000269|PubMed:11038054}. ENOG411E05R T10K17.90 Q9LXU2,Q9C8H3,Q9M2R0 Q9LXU2_ARATH,Q9C8H3_ARATH,Q9M2R0_ARATH Anthranilate phosphoribosyltransferase-like protein (Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein),Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (Uncharacterized protein F19C24.20) 88510,89154,89193 Anthranilate phosphoribosyltransferase-like protein (Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein),Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (Uncharacterized protein F19C24.20) integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transferase activity, transferring glycosyl groups [GO:0016757],cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2182305;,locus:2017627;,locus:2095853; AT5G12970,AT1G51570,AT3G57880 domain-containing protein NA NA NA NA NA NA NA ENOG411E05S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Probable calcium-binding protein CML17 (Calmodulin-like protein 17),Probable calcium-binding protein CML22 (Calmodulin-like protein 22),Os04g0492800 protein Q0DZP5,Q0JC44,A0A0N7KJA3 CML17_ORYSJ,CML22_ORYSJ,A0A0N7KJA3_ORYSJ CML17 Os02g0606600 LOC_Os02g39380,CML22 Os04g0492800 LOC_Os04g41540 OJ990528_30.6 OSJNBb0091E11.1,Os04g0492800 OSNPB_040492800 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411E057 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase C-terminal domain NA NA NA NA NA NA NA ENOG411E050 VPS51,UNH Q0WQ75,F4JH69 VPS51_ARATH,F4JH69_ARATH Vacuolar protein sorting-associated protein 51 homolog (Protein UNHINGED),Vps51/Vps67 family (Components of vesicular transport) protein DISRUPTION PHENOTYPE: Leaf vascular tissue patterning defects: simpler leaf venation with distal non-meeting of the secondary veins and fewer higher order veins, a narrower leaf with prominent serrations, and reduced root and shoot growth. Normal early endocytic events, but disrupted cellular trafficking. Reduced vacuolar targeting resulting in expanded expression of PIN1 in leaf margins and altered expression pattern of PIN1 and ATHB8 in secondary veins. {ECO:0000269|PubMed:24757006}. FUNCTION: Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex is required for the maintenance of protein retrieval from endosomes to the TGN, acid hydrolase sorting, lysosome function, endosomal cholesterol traffic and autophagy. VPS51 participates in retrograde transport of acid hydrolase receptors, likely by promoting tethering and SNARE-dependent fusion of endosome-derived carriers to the TGN. Acts as component of the EARP complex that is involved in endocytic recycling. The EARP complex associates with Rab4-positive endosomes and promotes recycling of internalized transferrin receptor (TFRC) to the plasma membrane (By similarity). Required for vacuolar targeting and cellular trafficking. Involved in the regulation of vascular tissue patterning, probably by regulating PIN1 expression pattern, thus modulating auxin flux. Important to prevent PIN1 accumulation within margin cells, possibly by targeting PIN1 to the lytic vacuole. Regulates PIN1 and ATHB8 expression pattern in secondary veins (PubMed:24757006). {ECO:0000250|UniProtKB:Q9UID3, ECO:0000269|PubMed:24757006}. 88516,91381 Vacuolar protein sorting-associated protein 51 homolog (Protein UNHINGED),Vps51/Vps67 family (Components of vesicular transport) protein cytosol [GO:0005829]; EARP complex [GO:1990745]; GARP complex [GO:0000938]; late endosome [GO:0005770]; recycling endosome [GO:0055037]; autophagy [GO:0006914]; endocytic recycling [GO:0032456]; leaf vascular tissue pattern formation [GO:0010305]; lipid transport [GO:0006869]; lysosomal transport [GO:0007041]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147]; vacuolar transport [GO:0007034]; vesicle-mediated transport [GO:0016192],cytosol [GO:0005829]; EARP complex [GO:1990745]; GARP complex [GO:0000938]; integral component of membrane [GO:0016021]; endocytic recycling [GO:0032456]; Golgi organization [GO:0007030]; Golgi vesicle transport [GO:0048193]; retrograde transport, endosome to Golgi [GO:0042147] DEVELOPMENTAL STAGE: In leaves, first observed at low levels in a diffuse pattern 3.5 days after germination (DAG), spreads throughout much of the lamina by 4 DAG and becomes increasingly restricted to presumptive veins from 5 to 8 DAG. Confined in epidermal cells of the proximal margins in mature leaves. {ECO:0000269|PubMed:24757006}. TISSUE SPECIFICITY: Expressed in primary and lateral roots, shoots of seedlings and flowers. {ECO:0000269|PubMed:24757006}. locus:2132193; AT4G02030 Protein fat-free homolog Os03g0737800 protein (Fragment) Q0DNR9 Q0DNR9_ORYSJ Os03g0737800 OSNPB_030737800 ENOG411E052 ENHANCED SILENCING PHENOTYPE 4,ESP4 Q9M033,F4HSZ1,A0A1P8B9H4,A0A1P8B9H2 Q9M033_ARATH,F4HSZ1_ARATH,A0A1P8B9H4_ARATH,A0A1P8B9H2_ARATH HEAT repeat-containing protein (Uncharacterized protein T10O8_110),Symplekin,HEAT repeat-containing protein Early flowering normal stature and leaf morphology.,Two- to three-fold fewer of the endogenous PDS mRNA than in the wild-type plants and 10- to 50-fold higher levels of PDS siRNA. Bleached cotyledons; Early flowering-D. Baulcombe-2006 R-ATH-72163;R-ATH-77595; 159478,145453,159330,140784 HEAT repeat-containing protein (Uncharacterized protein T10O8_110),Symplekin,HEAT repeat-containing protein mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; posttranscriptional gene silencing by RNA [GO:0035194]; RNA processing [GO:0006396],cell [GO:0005623]; cellular response to glucose stimulus [GO:0071333] locus:2179137;,locus:2823596; AT5G01400,AT1G27595 K06100 symplekin Os07g0693900 protein (Putative symplekin) Q69R94 Q69R94_ORYSJ Os07g0693900 OsJ_25697 OSNPB_070693900 P0627E10.2 ENOG411EH5D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein ycf76 (ORF85) Q32766 YCF76_ORYSJ ycf76-A LOC_Osp1g00830; ycf76-B ENOG411EH5E SUMO5 Q8VZI7 SUMO5_ARATH Small ubiquitin-related modifier 5 (AtSUMO5) FUNCTION: Ubiquitin-like protein which can be covalently attached to target lysines as a monomer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process (By similarity). {ECO:0000250}. MISCELLANEOUS: Stress conditions rapidly and substantially elevates the amount of SUMO1 and SUMO2 conjugates with a concomitant reduction in the amount of free SUMO proteins. The SUMO conjugation system plays an important function in stress protection and/or repair. R-ATH-3065676;R-ATH-3065679;R-ATH-5693565; 12098 Small ubiquitin-related modifier 5 (AtSUMO5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein tag [GO:0031386]; protein sumoylation [GO:0016925] locus:505006284; AT2G32765 sum5 sumo5 atsumo5 sumo5 (small ubiquitinrelated modifier 5) NA NA NA NA NA NA NA ENOG411EH5F MRI1.12 Q9FHG7 Q9FHG7_ARATH At5g57760 (Uncharacterized protein At5g57760) 9088 At5g57760 (Uncharacterized protein At5g57760) locus:2172560; AT5G57760 NA NA NA NA NA NA NA NA ENOG411EH5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5A Q9XIB7 Q9XIB7_ARATH At1g49500/F13F21_6 (Expressed protein) (F13F21.6 protein) (Transcription initiation factor TFIID subunit 1b-like protein) (Uncharacterized protein At1g49500) (Uncharacterized protein F13F21.6) 7081 At1g49500/F13F21_6 (Expressed protein) (F13F21.6 protein) (Transcription initiation factor TFIID subunit 1b-like protein) (Uncharacterized protein At1g49500) (Uncharacterized protein F13F21.6) translation initiation factor activity [GO:0003743] locus:2010232; AT1G49500 NA NA NA NA NA NA NA NA ENOG411EH5B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Ubox domain-containing protein NA NA NA NA NA NA NA ENOG411EH5H F4I1R5 F4I1R5_ARATH Heavy metal transport/detoxification superfamily protein 21172 Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2010192; AT1G49420 NA NA NA NA NA NA NA NA ENOG411EH5I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5J F4I8W7 F4I8W7_ARATH Pentatricopeptide repeat (PPR) superfamily protein 16285 Pentatricopeptide repeat (PPR) superfamily protein locus:2200046; AT1G11470 NA NA NA NA NA NA NA NA ENOG411EH5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5U Q9SIF7,A0A1P8AUS7,A0A1P8AUP3,F4I3C6,F4ISC4,F4I3C5,F4ILK1,F4ISC5,F4ILN4,F4J6S0 Q9SIF7_ARATH,A0A1P8AUS7_ARATH,A0A1P8AUP3_ARATH,F4I3C6_ARATH,F4ISC4_ARATH,F4I3C5_ARATH,F4ILK1_ARATH,F4ISC5_ARATH,F4ILN4_ARATH,F4J6S0_ARATH Uncharacterized protein At2g11620,Uncharacterized protein 54318,28318,28117,32043,12933,31843,45179,6479,32005,41119 Uncharacterized protein At2g11620,Uncharacterized protein locus:2041740;,locus:2012141;,locus:504956077;,locus:2827299;,locus:2060689;,locus:2077187; AT2G11620,AT1G49700,AT2G11623,AT2G29605,AT2G29850,AT3G45800 NA NA NA NA NA NA NA NA ENOG411EH5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) NA NA NA NA NA NA NA ENOG411EH5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411EH5S RPP2E,RPP2C Q9LUK2,Q9LH85 RLA25_ARATH,RLA23_ARATH 60S acidic ribosomal protein P2-5,60S acidic ribosomal protein P2-3 FUNCTION: Plays an important role in the elongation step of protein synthesis. {ECO:0000250}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 11759,11735 60S acidic ribosomal protein P2-5,60S acidic ribosomal protein P2-3 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; translational elongation [GO:0006414],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translational elongation [GO:0006414] locus:2174890;,locus:2098653; AT5G40040,AT3G28500 60s Acidic ribosomal protein NA NA NA NA NA NA NA ENOG411EH5X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EH5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH5Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF151 NA NA NA NA NA NA NA ENOG411EH54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EH52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divergent CCT motif NA NA NA NA NA NA NA ENOG411EH53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0240500 protein A0A0P0V0C7 A0A0P0V0C7_ORYSJ Os01g0240500 OSNPB_010240500 ENOG411EH59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MyTH4 domain NA NA NA NA NA NA NA ENOG411EMK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 Zinc finger CCCH domain-containing protein 7 (OsC3H7),Os01g0572100 protein (Fragment) Q657B3,A0A0P0V4B6 C3H7_ORYSJ,A0A0P0V4B6_ORYSJ Os01g0572100 LOC_Os01g39100 B1129G05.17,Os01g0572100 OSNPB_010572100 ENOG411EEB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0144800 protein A0A0P0XSB9 A0A0P0XSB9_ORYSJ Os10g0144800 OSNPB_100144800 ENOG411EEIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EEI8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor NA NA NA NA NA NA NA ENOG411EEB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFDB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0969700 protein (cDNA clone:J023110K15, full insert sequence),Os01g0967600 protein (Fragment) Q5JLF5,A0A0P0VD99 Q5JLF5_ORYSJ,A0A0P0VD99_ORYSJ Os01g0969700 OJ1656_A11.30 OsJ_04915 OSNPB_010969700,Os01g0967600 OSNPB_010967600 ENOG411E4TD F19K16.24 Q9SQN9 Q9SQN9_ARATH Early nodulin-like protein 7 (F20B17.22) (Plastocyanin-like domain-containing protein) (Uncharacterized protein F19K16.24) 21197 Early nodulin-like protein 7 (F20B17.22) (Plastocyanin-like domain-containing protein) (Uncharacterized protein F19K16.24) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2017819; AT1G79800 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E4TN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0378450 protein Q338Y5 Q338Y5_ORYSJ Os10g0378450 LOC_Os10g23230 OSNPB_100378450 ENOG411E4TH RHS13 O81417,O22257 O81417_ARATH,O22257_ARATH At4g02270 (Root hair specific 13) (T2H3.4) (Uncharacterized protein At4g02270),Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At2g47540) 18103,19055 At4g02270 (Root hair specific 13) (T2H3.4) (Uncharacterized protein At4g02270),Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At2g47540) integral component of membrane [GO:0016021] locus:2137814;,locus:2062024; AT4G02270,AT2G47540 pollen Ole e 1 allergen and extensin family protein NA NA NA NA NA NA NA ENOG411DUGB MRS2-5 Q9ZPR4 MRS25_ARATH Magnesium transporter MRS2-5 (Magnesium Transporter 3) (AtMGT3) Homozygote has a WT phenotype even under conditions of Mg+ stress. FUNCTION: Magnesium transporter that may mediate the influx of magnesium. {ECO:0000250}. MISCELLANEOUS: Has the ability to complement a mutant in yeast lacking magnesium transport capability. R-ATH-5223345; 47035 Magnesium transporter MRS2-5 (Magnesium Transporter 3) (AtMGT3) integral component of membrane [GO:0016021]; magnesium ion transmembrane transporter activity [GO:0015095] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:11752386, ECO:0000269|PubMed:19966073}. locus:2044254; AT2G03620 Magnesium Transporter NA NA NA NA NA NA NA ENOG411DUGF YUP8H12.12 Q8GXY6 Q8GXY6_ARATH At1g05270 (TraB family protein) (Uncharacterized protein At1g05270) (Uncharacterized protein At1g05270/YUP8H12_12) 40742 At1g05270 (TraB family protein) (Uncharacterized protein At1g05270) (Uncharacterized protein At1g05270/YUP8H12_12) integral component of mitochondrial outer membrane [GO:0031307] locus:2207205; AT1G05270 traB domain-containing Os05g0499500 protein (cDNA, clone: J100029H20, full insert sequence) B7FA11 B7FA11_ORYSJ Os05g0499500 OSNPB_050499500 ENOG411DUGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA late embryogenesis abundant protein Os03g0159600 protein (Putative abscisic acid-induced protein) (Seed maturation protein, expressed) (cDNA clone:002-115-B06, full insert sequence),Os09g0463450 protein,Os12g0470000 protein Q8H8B0,A0A0P0XP40,A0A0P0YA29 Q8H8B0_ORYSJ,A0A0P0XP40_ORYSJ,A0A0P0YA29_ORYSJ OJ1134F05.19 LOC_Os03g06360 Os03g0159600 OSNPB_030159600,Os09g0463450 OSNPB_090463450,Os12g0470000 OSNPB_120470000 ENOG411DUGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc Os10g0562500 protein (Fragment) Q0IVN4 Q0IVN4_ORYSJ Os10g0562500 OSNPB_100562500 ENOG411DUGJ MNJ7.21 Q8W555,Q8VZ63,F4JFN7,F4JYK6,F4JYK7 Q8W555_ARATH,Q8VZ63_ARATH,F4JFN7_ARATH,F4JYK6_ARATH,F4JYK7_ARATH AT3g07810/F17A17_15 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein),Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein 51872,46132,52056,48599,39308 AT3g07810/F17A17_15 (Putative RNA-binding protein) (RNA-binding (RRM/RBD/RNP motifs) family protein),Putative RNA-binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723],mRNA binding [GO:0003729] locus:2077392;,locus:2169068; AT3G07810,AT5G47620 heterogeneous nuclear ribonucleoprotein Os11g0637700 protein (RNA-binding protein, putative, expressed) (cDNA clone:001-202-B11, full insert sequence) (cDNA clone:J023056G11, full insert sequence),Os07g0584500 protein (Putative heterogeneous nuclear ribonucleoprotein A1) (cDNA clone:J013116G21, full insert sequence),Os11g0637700 protein (Fragment) Q2R0P4,Q84ZR9,A0A0P0Y4R9 Q2R0P4_ORYSJ,Q84ZR9_ORYSJ,A0A0P0Y4R9_ORYSJ LOC_Os11g41890 Os11g0637700 OSNPB_110637700,OJ1127_E01.125 Os07g0584500 OSNPB_070584500,Os11g0637700 OSNPB_110637700 ENOG411DUGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os03g0314400 protein (Pentatricopeptide, putative, expressed) Q10MC4 Q10MC4_ORYSJ Os03g0314400 LOC_Os03g19980 Os03g0314400 OsJ_10614 OSNPB_030314400 ENOG411DUGV F4K466,A0A1P8BB27,A0A1P8BB42 F4K466_ARATH,A0A1P8BB27_ARATH,A0A1P8BB42_ARATH Zinc knuckle (CCHC-type) family protein 44110,31357,46009 Zinc knuckle (CCHC-type) family protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2149234; AT5G20220 zinc knuckle (CCHC-type) family protein NA NA NA NA NA NA NA ENOG411DUGX LARP1A,LARP1a Q940X9,F4K704,F4K703 LRP1A_ARATH,F4K704_ARATH,F4K703_ARATH La-related protein 1A (AtLARP1a),LA RNA-binding protein DISRUPTION PHENOTYPE: Reduced heat-induced fold reduction of mRNAs and impaired attachment of XNR4 to polysomes. {ECO:0000269|PubMed:24332370}. FUNCTION: Required for acclimation and survival during thermal stress. Heat-specific cofactor of XRN4 required for its targeting to polysomes and subsequent rapid degradation of seedling transcriptome during the early steps of the heat stress response. {ECO:0000269|PubMed:24332370}. 91377,92326,92170 La-related protein 1A (AtLARP1a),LA RNA-binding protein cytosol [GO:0005829]; P-body [GO:0000932]; polysome [GO:0005844]; RNA binding [GO:0003723]; heat acclimation [GO:0010286]; mRNA catabolic process [GO:0006402],cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; P-body [GO:0000932]; mRNA binding [GO:0003729]; cellular heat acclimation [GO:0070370],RNA binding [GO:0003723] locus:2179013; AT5G21160 La-related protein La related protein-like (Os01g0266000 protein) Q5NBG8 Q5NBG8_ORYSJ Os01g0266000 OSNPB_010266000 P0499C11.24 ENOG411DUG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411DUG1 CXE17,CXE6 Q9LFR7,Q9SX25 CXE17_ARATH,CXE6_ARATH Probable carboxylesterase 17 (AtCXE17) (EC 3.1.1.1),Probable carboxylesterase 6 (AtCXE6) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT5G16080-MONOMER;,ARA:AT1G68620-MONOMER; 3.1.1.1 37698,37150 Probable carboxylesterase 17 (AtCXE17) (EC 3.1.1.1),Probable carboxylesterase 6 (AtCXE6) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:14738307}.,TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:14738307}. locus:2146097;,locus:2026920; AT5G16080,AT1G68620 Carboxylesterase Expressed protein (Os03g0258200 protein) (cDNA clone:J023136E13, full insert sequence) Q10NU5 Q10NU5_ORYSJ LOC_Os03g15270 Os03g0258200 OSNPB_030258200 ENOG411DUG3 GGT4,GGT1,GGT2,GGT3 Q9CAR5,Q8VYW6,Q680I5,Q9M0G0 GAGT4_ARATH,GAGT1_ARATH,GAGT2_ARATH,GAGT3_ARATH Putative inactive glutathione hydrolase 4 (Gamma-glutamyltranspeptidase 3) (Putative inactive gamma-glutamyltranspeptidase 4),Glutathione hydrolase 1 (EC 3.4.19.13) (Gamma-glutamyltransferase 1) (Gamma-glutamyltranspeptidase 1) (EC 2.3.2.2),Glutathione hydrolase 2 (EC 3.4.19.13) (Gamma-glutamyltransferase 2) (Gamma-glutamyltranspeptidase 2) (EC 2.3.2.2),Glutathione hydrolase 3 (EC 3.4.19.13) (Gamma-glutamyltransferase 3) (Gamma-glutamyltranspeptidase 3) (EC 2.3.2.2) (Gamma-glutamyltranspeptidase 4) DISRUPTION PHENOTYPE: Mutant plants (Ds insertion) display reduced inflorescence height, silique number and seed yield. {ECO:0000269|PubMed:17545509}.,DISRUPTION PHENOTYPE: Slight reduction in size, early flowering and increased chlorosis in older leaves. Accumulation of GSSG in the apoplastic space. {ECO:0000269|PubMed:17316175, ECO:0000269|PubMed:17545509}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17316175, ECO:0000269|PubMed:20959624}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:17545509}. Increased chlorosis in older leaves when compared with wild-type and smaller rosette diameter. ggt1-2 plants bolted approximately 3 days earlier than the wild-type plants. Yellowing leaves in the ggt1-2 mutant was caused by oxidative stress lipid peroxidation levels increased,This mutant plant has reduced levels of gamma-glutamyl transpeptidase (GGT) activity with the magnitude of reduction differing between organs. GGT is reduced by about 90% in leaves and flowers. These mutants are significantly smaller than wild-type plants and have higher levels of chlorosis.,The 5-oxoproline (5OP) level in this mutant is not significantly different from the level in the oxp1-1 mutant suggesting that neither GGT1 nor GGT4 are important upstream enzymes for generating the 5OP used by OXP1.,The 5-oxoproline (5OP) level in this mutant is not significantly different from the level in the oxp1-1 mutant suggesting that GGT1 is not an important upstream enzyme for generating the 5OP used by OXP1.,These mutant plants have reduced levels of gamma-glutamyl transpeptidase activity especially in the roots compared with wild-type plants.,The 5-oxoproline (5OP) level in this mutant is not significantly different from the level in the oxp1-1 mutant suggesting that GGT4 is not an important upstream enzyme for generating the 5OP used by OXP1. Dwarf; Chlorotic-D. Oliver-2007 FUNCTION: May play a role in preventing oxidative stress by metabolizing extracellular oxidized glutathione (GSSG). {ECO:0000269|PubMed:17316175}.,FUNCTION: May be required for glutathione transport into developing seeds. {ECO:0000305}.,FUNCTION: May play a role in protecting plants from some xenobiotic chemicals by degrading vacuolar glutathione conjugates into cysteine conjugates. {ECO:0000269|PubMed:17316176}. PATHWAY: Sulfur metabolism; glutathione metabolism. ARA:AT1G69820-MONOMER;,ARA:AT4G39640-MONOMER;,ARA:AT4G39650-MONOMER;,ARA:AT4G29210-MONOMER;MetaCyc:AT4G29210-MONOMER; R-ATH-174403;R-ATH-2142691;R-ATH-5423646; 2.3.2.2;,2.3.2.2;3.4.19.13; 3.4.19.13; 2.3.2.2 20908,61190,61600,69148 Putative inactive glutathione hydrolase 4 (Gamma-glutamyltranspeptidase 3) (Putative inactive gamma-glutamyltranspeptidase 4),Glutathione hydrolase 1 (EC 3.4.19.13) (Gamma-glutamyltransferase 1) (Gamma-glutamyltranspeptidase 1) (EC 2.3.2.2),Glutathione hydrolase 2 (EC 3.4.19.13) (Gamma-glutamyltransferase 2) (Gamma-glutamyltranspeptidase 2) (EC 2.3.2.2),Glutathione hydrolase 3 (EC 3.4.19.13) (Gamma-glutamyltransferase 3) (Gamma-glutamyltranspeptidase 3) (EC 2.3.2.2) (Gamma-glutamyltranspeptidase 4) glutathione hydrolase activity [GO:0036374]; glutathione catabolic process [GO:0006751],apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; glutathione gamma-glutamylcysteinyltransferase activity [GO:0016756]; glutathione hydrolase activity [GO:0036374]; hypoglycin A gamma-glutamyl transpeptidase activity [GO:0102953]; glutathione catabolic process [GO:0006751]; response to oxidative stress [GO:0006979],apoplast [GO:0048046]; plasma membrane [GO:0005886]; glutathione gamma-glutamylcysteinyltransferase activity [GO:0016756]; glutathione hydrolase activity [GO:0036374]; hypoglycin A gamma-glutamyl transpeptidase activity [GO:0102953]; glutathione catabolic process [GO:0006751]; glutathione transmembrane transport [GO:0034775],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; glutathione gamma-glutamylcysteinyltransferase activity [GO:0016756]; glutathione hydrolase activity [GO:0036374]; hypoglycin A gamma-glutamyl transpeptidase activity [GO:0102953]; glutathione catabolic process [GO:0006751]; response to toxic substance [GO:0009636]; xenobiotic metabolic process [GO:0006805] TISSUE SPECIFICITY: Expressed at low levels in embryo, roots and leaves. In mature plants, expression is restricted to vascular tissues of roots, leaves, flowers and siliques. {ECO:0000269|PubMed:17545509, ECO:0000269|PubMed:20959624}.,TISSUE SPECIFICITY: Expressed in embryo, roots and leaves. In mature plants, expression is restricted to vascular tissues of roots, leaves, flowers and siliques. {ECO:0000269|PubMed:17316175, ECO:0000269|PubMed:17545509, ECO:0000269|PubMed:20959624}.,TISSUE SPECIFICITY: Expressed in roots, immature trichomes and pollen. In developing siliques, specifically expressed in the embryo, endosperm, outer integument and a small portion of the funiculus. {ECO:0000269|PubMed:17316175, ECO:0000269|PubMed:17545509, ECO:0000269|PubMed:20959624}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons, leaves, flowers and siliques. {ECO:0000269|PubMed:17316176, ECO:0000269|PubMed:17545509, ECO:0000269|PubMed:20959624}. locus:2196769;,locus:2135212;,locus:2135222;,locus:2118229; AT1G69820,AT4G39640,AT4G39650,AT4G29210 gamma-glutamyltranspeptidase Os04g0457500 protein,Os01g0151400 protein (Fragment),Os01g0151500 protein A0A0P0WAX0,A0A0P0UYM9,A0A0P0UYM7 A0A0P0WAX0_ORYSJ,A0A0P0UYM9_ORYSJ,A0A0P0UYM7_ORYSJ Os04g0457500 OSNPB_040457500,Os01g0151400 OSNPB_010151400,Os01g0151500 OSNPB_010151500 ENOG411DUG5 IDD2,IDD1 Q9SCQ6,Q9LVQ7 IDD2_ARATH,IDD1_ARATH Protein indeterminate-domain 2,Protein indeterminate-domain 1 (Protein ENHYDROUS) FUNCTION: Probable transcription factor. {ECO:0000305}.,FUNCTION: Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation. Acts as a positive regulator of phytochrome and/or gibberellin action. {ECO:0000269|PubMed:21571950}. 47943,52626 Protein indeterminate-domain 2,Protein indeterminate-domain 1 (Protein ENHYDROUS) DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of gibberellic acid mediated signaling pathway [GO:0009937]; regulation of seed germination [GO:0010029]; regulation of transcription, DNA-templated [GO:0006355]; seed maturation [GO:0010431]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. locus:2101739;,locus:2173624; AT3G50700,AT5G66730 zinc finger protein Os03g0197800 protein (Zinc finger, C2H2 type family protein, expressed) Q10QG1 Q10QG1_ORYSJ Os03g0197800 LOC_Os03g10140 OSNPB_030197800 ENOG411DUG6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411DUG7 Q8L4S3,F4KCL2 Q8L4S3_ARATH,F4KCL2_ARATH At5g09390/T5E8_190 (CD2-binding protein-like protein),CD2-binding protein-like protein R-ATH-72163; 40300,39980 At5g09390/T5E8_190 (CD2-binding protein-like protein),CD2-binding protein-like protein U5 snRNP [GO:0005682] locus:2184837; AT5G09390 Inherit from KOG: CD2 (cytoplasmic tail) binding protein 2 Os09g0372400 protein (Fragment) A0A0P0XMG6 A0A0P0XMG6_ORYSJ Os09g0372400 OSNPB_090372400 ENOG411E3MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium-binding protein NA NA NA NA NA NA NA ENOG411EF3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411EF3Q Q9SHT0 Q9SHT0_ARATH Expressed protein (Uncharacterized protein At2g27180) 18115 Expressed protein (Uncharacterized protein At2g27180) locus:2059624; AT2G27180 NA NA NA NA NA NA NA NA ENOG411EF3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit NA NA NA NA NA NA NA ENOG411EF3T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacillus/Clostridium GerA spore germination protein NA NA NA NA NA NA NA ENOG411EF3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain NA NA NA NA NA NA NA ENOG411EF3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EF3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EF3I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein NA NA NA NA NA NA NA ENOG411EF3J RTL1 Q9M8N2,A0A1P8AUQ1,A0A1P8AUQ2,A0A1P8AUS6 RTL1_ARATH,A0A1P8AUQ1_ARATH,A0A1P8AUQ2_ARATH,A0A1P8AUS6_ARATH Ribonuclease 3-like protein 1 (Ribonuclease III-like protein 1) (RNase III-like protein 1) (Ribonuclease three-like protein 1),RNAse THREE-like protein 1 22619,21351,16678,18713 Ribonuclease 3-like protein 1 (Ribonuclease III-like protein 1) (RNase III-like protein 1) (Ribonuclease three-like protein 1),RNAse THREE-like protein 1 RNA binding [GO:0003723] locus:2198898; AT1G80650 Double-stranded RNA binding motif NA NA NA NA NA NA NA ENOG411EF3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bacterial extracellular solute-binding protein NA NA NA NA NA NA NA ENOG411EF3N GRXS9 O04341 GRXS9_ARATH Monothiol glutaredoxin-S9 (AtGrxS9) (Protein ROXY 7) FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. 11080 Monothiol glutaredoxin-S9 (AtGrxS9) (Protein ROXY 7) cytoplasm [GO:0005737]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2064327; AT2G30540 Glutaredoxin NA NA NA NA NA NA NA ENOG411EF3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: family with sequence similarity 63 member Os07g0258100 protein (Fragment) A0A0P0X591 A0A0P0X591_ORYSJ Os07g0258100 OSNPB_070258100 ENOG411EF3D ATG8A,ATG8C,APG8A Q8LEM4,Q8S927,A8MS84,F4HX35 ATG8A_ARATH,ATG8C_ARATH,A8MS84_ARATH,F4HX35_ARATH Autophagy-related protein 8a (Autophagy-related ubiquitin-like modifier ATG8a) (AtAPG8a) (Protein autophagy 8a),Autophagy-related protein 8c (Autophagy-related ubiquitin-like modifier ATG8c) (AtAPG8c) (Protein autophagy 8c),Autophagy-related protein FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. 13695,13733,15405,10879 Autophagy-related protein 8a (Autophagy-related ubiquitin-like modifier ATG8a) (AtAPG8a) (Protein autophagy 8a),Autophagy-related protein 8c (Autophagy-related ubiquitin-like modifier ATG8c) (AtAPG8c) (Protein autophagy 8c),Autophagy-related protein autophagosome membrane [GO:0000421]; cytoplasmic vesicle [GO:0031410]; microtubule [GO:0005874]; autophagy [GO:0006914]; cellular response to nitrogen starvation [GO:0006995]; protein transport [GO:0015031],autophagosome [GO:0005776]; cytoplasm [GO:0005737]; Atg8 activating enzyme activity [GO:0019779]; Atg8 ligase activity [GO:0019776]; Atg8-specific protease activity [GO:0019786]; autophagy [GO:0006914]; defense response to fungus [GO:0050832],autophagy [GO:0006914] TISSUE SPECIFICITY: Contitutively expressed. {ECO:0000269|PubMed:15494556}. locus:2120618;,locus:2036853; AT4G21980,AT1G62040 Pfam:MAP1_LC3 Autophagy-related protein 8B (Autophagy-related ubiquitin-like modifier ATG8B),Autophagy-related protein 8C (Autophagy-related ubiquitin-like modifier ATG8C) Q7XPR1,Q6Z1D5 ATG8B_ORYSJ,ATG8C_ORYSJ ATG8B APG8B Os04g0624000 LOC_Os04g53240 OsJ_015525 OSJNBa0053K19.12,ATG8C APG8C Os08g0191600 LOC_Os08g09240 OsJ_26315 OSJNBa0056O06.5 FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. ENOG411EF3E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EF30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WW domain NA NA NA NA NA NA NA ENOG411EF31 Q58G57 Q58G57_ARATH Cystatin/monellin superfamily protein 23434 Cystatin/monellin superfamily protein cysteine-type endopeptidase inhibitor activity [GO:0004869] locus:2020743; AT1G03710 Has 51 Blast hits to 49 proteins in 5 species Archae - 0 NA NA NA NA NA NA NA ENOG411EF32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os05g0233100 protein A0A0P0WJL0 A0A0P0WJL0_ORYSJ Os05g0233100 OSNPB_050233100 ENOG411EF34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain NA NA NA NA NA NA NA ENOG411EF35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Glutaredoxin NA NA NA NA NA NA NA ENOG411EF36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc NA NA NA NA NA NA NA ENOG411EF37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411DTYB MJB21.15 Q9SKJ9,A0A1P8BDN0,A0A1P8BDL4,F4K331,A0A1P8BCG1,F4K330,F4K0M7 Q9SKJ9_ARATH,A0A1P8BDN0_ARATH,A0A1P8BDL4_ARATH,F4K331_ARATH,A0A1P8BCG1_ARATH,F4K330_ARATH,F4K0M7_ARATH At2g25500 (Expressed protein) (Inosine triphosphate pyrophosphatase family protein),Maf-like protein 10860,22430,26268,22825,22752,25768,22565 At2g25500 (Expressed protein) (Inosine triphosphate pyrophosphatase family protein),Maf-like protein nucleoside-triphosphate diphosphatase activity [GO:0047429],chloroplast [GO:0009507]; nucleoside-triphosphate diphosphatase activity [GO:0047429] locus:2040120;,locus:2165492;,locus:2154895; AT2G25500,AT5G42770,AT5G66550 Maf-like protein Maf-like protein, expressed (Os11g0549655 protein) (cDNA, clone: J065148G18, full insert sequence),Maf family protein, putative, expressed (Os11g0549600 protein) (Os11g0549695 protein) Q2R2T0,Q2R2S2 Q2R2T0_ORYSJ,Q2R2S2_ORYSJ Os11g0549655 LOC_Os11g34770 OSNPB_110549655,Os11g0549695 LOC_Os11g34850 Os11g0549600 OsJ_34224 OSNPB_110549695 ENOG411EI5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DS38 MGH6.1 Q9LSI4 Q9LSI4_ARATH NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 35198 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2089205; AT3G12910 NAC domain-containing protein NA NA NA NA NA NA NA ENOG411DR30 Q0WML1,F4IYK3,A0A1I9LNM5 Q0WML1_ARATH,F4IYK3_ARATH,A0A1I9LNM5_ARATH ARM repeat superfamily protein R-ATH-6798695; 72782,96465,66244 ARM repeat superfamily protein cytosol [GO:0005829]; protein transporter activity [GO:0008565]; nucleocytoplasmic transport [GO:0006913],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; NLS-bearing protein import into nucleus [GO:0006607]; protein import into nucleus, translocation [GO:0000060]; ribosomal protein import into nucleus [GO:0006610],intracellular [GO:0005622]; protein transporter activity [GO:0008565]; nucleocytoplasmic transport [GO:0006913] locus:2830447;,locus:2830442; AT3G08947,AT3G08943 importin subunit Importin beta 1 (Importin-beta1) (Os05g0353400 protein) (cDNA clone:J013029L11, full insert sequence),Os05g0353400 protein (Fragment) Q9ZWR5,A0A0P0WL85 Q9ZWR5_ORYSJ,A0A0P0WL85_ORYSJ Os05g0353400 OJ1320_D10.8 OsJ_18185 OSNPB_050353400,Os05g0353400 OSNPB_050353400 ENOG411EI8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: G protein-coupled receptor associated sorting protein Os05g0225800 protein (cDNA clone:J023063L01, full insert sequence),Os05g0227600 protein (Proline-rich protein) (Putative repetitive proline rich protein),Os05g0226900 protein (Putative repetitive proline rich protein) (cDNA clone:J023045I16, full insert sequence),Os05g0226000 protein Q0DJU8,Q84PC5,Q6AVC2,Q0DJU7 Q0DJU8_ORYSJ,Q84PC5_ORYSJ,Q6AVC2_ORYSJ,Q0DJU7_ORYSJ Os05g0225800 Os05g0225800 OSNPB_050225800,Os05g0227600 Os05g0227600 OJ1212_C10.12 OsJ_17614 OSNPB_050227600,Os05g0226900 OJ1212_C10.8 OsJ_17611 OSNPB_050226900,Os05g0226000 Os05g0226000 OSNPB_050226000 ENOG411EI8J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Exonuc_X-T Os04g0303950 protein B9FEC6 B9FEC6_ORYSJ Os04g0303950 OsJ_14204 OSNPB_040303950 ENOG411EI8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EI8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1084) NA NA NA NA NA NA NA ENOG411EI8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8D Q0IGM1 Q0IGM1_ARATH At1g12845 (Transmembrane protein) 12822 At1g12845 (Transmembrane protein) integral component of membrane [GO:0016021] locus:505006119; AT1G12845 NA NA NA NA NA NA NA NA ENOG411EI8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0456000 protein Q0IX99 Q0IX99_ORYSJ Os10g0456000 OSNPB_100456000 ENOG411EI8B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8C Q94JR6,Q3E8R5,Q2V2Q8,F4HT37 DF206_ARATH,DF207_ARATH,DF208_ARATH,F4HT37_ARATH Defensin-like protein 206,Defensin-like protein 207,Defensin-like protein 208,Defensin-like (DEFL) family protein 8384,8396,8424,11838 Defensin-like protein 206,Defensin-like protein 207,Defensin-like protein 208,Defensin-like (DEFL) family protein extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:2080537;,locus:504955126;,locus:1009023141; AT3G59930,AT5G33355,AT1G34047 Defensin-like NA NA NA NA NA NA NA ENOG411EI8A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8V Q1G3T6 Q1G3T6_ARATH Uncharacterized protein 7620 Uncharacterized protein locus:4515102564; AT1G22065 NA NA NA NA NA NA NA NA ENOG411EI8W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EI8U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0203200 protein A0A0N7KSK9 A0A0N7KSK9_ORYSJ Os11g0203200 OSNPB_110203200 ENOG411EI8S F4I5I4 F4I5I4_ARATH Uncharacterized protein 19373 Uncharacterized protein locus:504956269; AT1G76965 NA NA NA NA NA NA NA NA ENOG411EI8P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0119700 protein A0A0P0UY12 A0A0P0UY12_ORYSJ Os01g0119700 OSNPB_010119700 ENOG411EI83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MAP1_LC3 Putative autophagy-related protein 8E (Autophagy-related ubiquitin-like modifier ATG8E),Autophagy-related protein Q6H6P0,A0A0P0VJU6 ATG8E_ORYSJ,A0A0P0VJU6_ORYSJ ATG8E APG8E Os02g0529150 LOC_Os02g32700 P0475F05.30 P0476H10.14,Os02g0529150 OSNPB_020529150 FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. ENOG411EI81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZ73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Os01g0327000 protein A0A0P0V2A4 A0A0P0V2A4_ORYSJ Os01g0327000 OSNPB_010327000 ENOG411DZ72 Q9FJ41 GDL85_ARATH GDSL esterase/lipase At5g45950 (EC 3.1.1.-) (Extracellular lipase At5g45950) ARA:AT5G45950-MONOMER; 3.1.1.- 39854 GDSL esterase/lipase At5g45950 (EC 3.1.1.-) (Extracellular lipase At5g45950) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2152425; AT5G45950 GDSL esterase lipase At5g45950-like Os02g0110000 protein (Putative GDSL-motif lipase/hydrolase protein) Q6Z8Z9 Q6Z8Z9_ORYSJ Os02g0110000 OsJ_05058 OSNPB_020110000 P0501G04.6 ENOG411DZ70 APG3 Q8RX79 APG3_ARATH Peptide chain release factor APG3, chloroplastic (Chloroplast ribosome release factor 1) (AtcpRF1) (Protein ALBINO AND PALE GREEN 3) DISRUPTION PHENOTYPE: Albino and pale green (apg) phenotype and early seedling growth arrest. {ECO:0000269|PubMed:17450416, ECO:0000269|PubMed:24793022}. Albino seeds and seedlings-R. Motohashi-2002 FUNCTION: May direct the termination of translation in response to the peptide chain termination codon UAG. Required for normal chloroplast development and plays essential roles in the termination of translation in plastids. {ECO:0000269|PubMed:17450416}. 47529 Peptide chain release factor APG3, chloroplastic (Chloroplast ribosome release factor 1) (AtcpRF1) (Protein ALBINO AND PALE GREEN 3) chloroplast [GO:0009507]; translation release factor activity [GO:0003747]; translation release factor activity, codon specific [GO:0016149]; chloroplast organization [GO:0009658]; plastid translation [GO:0032544]; regulation of growth [GO:0040008]; thylakoid membrane organization [GO:0010027]; translational termination [GO:0006415] TISSUE SPECIFICITY: Expressed in roots, leaves and stems. {ECO:0000269|PubMed:17450416}. locus:2099137; AT3G62910 peptide chain release factor Os11g0657100 protein (Peptide chain release factor 1, putative, expressed) (cDNA clone:006-207-B09, full insert sequence) (cDNA clone:J013065L12, full insert sequence) Q2R068 Q2R068_ORYSJ Os11g0657100 LOC_Os11g43600 Os11g0657100 OsJ_34701 OSNPB_110657100 ENOG411DZ77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Probable aquaporin TIP3-2 (Tonoplast intrinsic protein 3-2) (OsTIP3;2) Q7XKI5 TIP32_ORYSJ TIP3-2 Os04g0527900 LOC_Os04g44570 OsJ_014891 OSJNBa0038O10.23 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DZ74 T20N10_10 Q8S8D2,Q9LXT5 Q8S8D2_ARATH,Q9LXT5_ARATH Ribosomal protein L1p/L10e family (Uncharacterized protein At2g42650),Ribosomal protein L1p/L10e family (Uncharacterized protein At3g58660) (Uncharacterized protein T20N10_10) 41689,49970 Ribosomal protein L1p/L10e family (Uncharacterized protein At2g42650),Ribosomal protein L1p/L10e family (Uncharacterized protein At3g58660) (Uncharacterized protein T20N10_10) 90S preribosome [GO:0030686]; ribosome [GO:0005840]; RNA binding [GO:0003723]; maturation of LSU-rRNA [GO:0000470],90S preribosome [GO:0030686]; membrane [GO:0016020]; nucleolus [GO:0005730]; ribosome [GO:0005840]; RNA binding [GO:0003723]; maturation of LSU-rRNA [GO:0000470] locus:2041554;,locus:2098979; AT2G42650,AT3G58660 ribosomal L1 domain-containing protein Os05g0558000 protein (cDNA clone:J033074P11, full insert sequence) Q6I5Z8 Q6I5Z8_ORYSJ Os05g0558000 Os05g0558000 OJ1214_E03.21 OSJNBa0001A14.3 OSNPB_050558000 ENOG411E8EE F24M12.60 Q9SD43,F4K0K4 Q9SD43_ARATH,F4K0K4_ARATH Metal ion-binding protein (Uncharacterized protein F24M12.60),Metal ion-binding protein 15108,17260 Metal ion-binding protein (Uncharacterized protein F24M12.60),Metal ion-binding protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2080953;,locus:2154900; AT3G51020,AT5G66370 NA NA NA NA NA NA NA NA ENOG411E8EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8EG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0587300 protein (Fragment) A0A0P0X871 A0A0P0X871_ORYSJ Os07g0587300 OSNPB_070587300 ENOG411E8EA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain NA NA NA NA NA NA NA ENOG411E8EC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0606100 protein,Os05g0588400 protein A0A0P0V504,A0A0P0WRC9 A0A0P0V504_ORYSJ,A0A0P0WRC9_ORYSJ Os01g0606100 OSNPB_010606100,Os05g0588400 OSNPB_050588400 ENOG411E8EJ P1R3 Q9FL84,Q8LD48 Q9FL84_ARATH,Q8LD48_ARATH Transcription factor UPBEAT-like protein,Uncharacterized protein At3g29370 (Uncharacterized protein At3g29370/MUO10_8) 12887,11203 Transcription factor UPBEAT-like protein,Uncharacterized protein At3g29370 (Uncharacterized protein At3g29370/MUO10_8) protein dimerization activity [GO:0046983] locus:2157280;,locus:2093842; AT5G39240,AT3G29370 NA NA NA NA NA NA NA NA ENOG411E8ET Q8GX16 Q8GX16_ARATH Plant/protein 12461 Plant/protein locus:1005716634; AT2G35215 NA NA NA NA NA NA NA NA ENOG411E8EV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: asparagine synthetase NA NA NA NA NA NA NA ENOG411E8EW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Succinate dehydrogenase/Fumarate reductase transmembrane subunit NA NA NA NA NA NA NA ENOG411E8EQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0637200 protein (cDNA clone:002-175-H01, full insert sequence) Q6H5W6 Q6H5W6_ORYSJ Os02g0637200 OJ1581_H09.22 OsJ_07656 OSJNBa0014E22.16 OSNPB_020637200 ENOG411E8ES PDF1.4 P82787 DEF19_ARATH Defensin-like protein 19 (Defensin AMP1 protein) (Low-molecular-weight cysteine-rich protein 78) (Protein LCR78) (Plant defensin 1.4) FUNCTION: Confers broad-spectrum resistance to pathogens. 8840 Defensin-like protein 19 (Defensin AMP1 protein) (Low-molecular-weight cysteine-rich protein 78) (Protein LCR78) (Plant defensin 1.4) extracellular region [GO:0005576]; defense response [GO:0006952]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:2013184; AT1G19610 Gamma-thionin family NA NA NA NA NA NA NA ENOG411E8EY CEP14 Q52K95 PCP14_ARATH Precursor of CEP14 (PCEP14) [Cleaved into: C-terminally encoded peptide 14 (CEP14)] FUNCTION: Extracellular signaling peptide that may regulate primary root growth rate and systemic nitrogen (N)-demand signaling. {ECO:0000250|UniProtKB:Q8L8Y3}. 11762 Precursor of CEP14 (PCEP14) [Cleaved into: C-terminally encoded peptide 14 (CEP14)] apoplast [GO:0048046]; hormone activity [GO:0005179]; multicellular organism development [GO:0007275]; nitrate import [GO:1902025]; regulation of root development [GO:2000280]; response to carbon dioxide [GO:0010037]; response to osmotic stress [GO:0006970] locus:2029909; AT1G29290 NA NA NA NA NA NA NA NA ENOG411DZ7X PCMP-E53 Q9SB36 PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270, chloroplastic 59535 Pentatricopeptide repeat-containing protein At4g25270, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA splicing [GO:0008380] locus:2122634; AT4G25270 Pentatricopeptide repeat-containing protein Os03g0852700 protein (Pentatricopeptide, putative, expressed),Os03g0852700 protein (Fragment) Q851X3,Q0DLP8 Q851X3_ORYSJ,Q0DLP8_ORYSJ Os03g0852700 LOC_Os03g63560 OSJNBa0015N08.28 OSNPB_030852700,Os03g0852700 OSNPB_030852700 ENOG411E8E4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os10g0101800 protein (VQ motif family protein) Q8W3B9 Q8W3B9_ORYSJ Os10g0101800 LOC_Os10g01240 OsJ_30453 OSJNBa0046L02.16 OSNPB_100101800 ENOG411E8E5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YCII-related domain NA NA NA NA NA NA NA ENOG411E8E6 T8O5.130 O49715 O49715_ARATH Uncharacterized protein AT4g21920 (Uncharacterized protein T8O5.130) 14512 Uncharacterized protein AT4g21920 (Uncharacterized protein T8O5.130) locus:2141682; AT4G21920 NA NA NA NA NA NA NA NA ENOG411E8E7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0494900 protein A3A729 A3A729_ORYSJ Os02g0494900 OsJ_06808 OSNPB_020494900 ENOG411E8E0 Q9CAH6 Q9CAH6_ARATH At1g72600 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein F28P22.21) 15236 At1g72600 (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein F28P22.21) integral component of membrane [GO:0016021] locus:2030220; AT1G72600 NA NA NA NA NA NA NA NA ENOG411E8E1 F4IRU6 F4IRU6_ARATH Uncharacterized protein 16466 Uncharacterized protein locus:2045273; AT2G31930 NA NA NA NA NA NA NA NA ENOG411E8E3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZ7D SCL15 O23210 SCL15_ARATH Scarecrow-like protein 15 (AtSCL15) (GRAS family protein 25) (AtGRAS-25) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 54148 Scarecrow-like protein 15 (AtSCL15) (GRAS family protein 25) (AtGRAS-25) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; regulation of shoot system development [GO:0048831]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. locus:2115340; AT4G36710 Scarecrow-like protein NA NA NA NA NA NA NA ENOG411DVH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Autophagy-related protein 13 OSJNBa0091D06.22 protein (Os04g0538700 protein) (cDNA clone:J023108N03, full insert sequence),Os02g0644500 protein Q0JBE1,Q6H657 Q0JBE1_ORYSJ,Q6H657_ORYSJ Os04g0538700 Os04g0538700 OSJNBa0091D06.22 OSNPB_040538700,Os02g0644500 OJ1282_H11.22 OSNPB_020644500 ENOG411EHIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3YZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA helix-loop-helix DNA-binding domain containing protein Helix-loop-helix DNA-binding domain containing protein, expressed (Os12g0597800 protein),Os12g0599400 protein (Os12g0599550 protein),Os12g0599550 protein,Os12g0599000 protein Q2QMN2,C7J9P9,A0A0P0YCQ4,A0A0P0YBW5 Q2QMN2_ORYSJ,C7J9P9_ORYSJ,A0A0P0YCQ4_ORYSJ,A0A0P0YBW5_ORYSJ Os12g0597800 LOC_Os12g40590 OsJ_36752 OSNPB_120597800,Os12g0599400 Os12g0599550 OSNPB_120599400,Os12g0599550 OSNPB_120599550,Os12g0599000 OSNPB_120599000 ENOG411E3YY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os01g0719600 protein (cDNA clone:J023077M05, full insert sequence) Q5JL91 Q5JL91_ORYSJ Os01g0719600 OsJ_03275 OSNPB_010719600 P0480C01.37 ENOG411E3YX SAUR70,F7M19_130 Q8GWV6,Q9M249,Q2V359 Q8GWV6_ARATH,Q9M249_ARATH,Q2V359_ARATH At5g20810 (SAUR-like auxin-responsive protein family) (Uncharacterized protein At5g20810/T1M15_210),Auxin-responsive protein-like protein (SAUR-like auxin-responsive protein family) (Uncharacterized protein F7M19_130),SAUR-like auxin-responsive protein family 18274,17971,20990 At5g20810 (SAUR-like auxin-responsive protein family) (Uncharacterized protein At5g20810/T1M15_210),Auxin-responsive protein-like protein (SAUR-like auxin-responsive protein family) (Uncharacterized protein F7M19_130),SAUR-like auxin-responsive protein family response to auxin [GO:0009733],peroxisome [GO:0005777]; response to auxin [GO:0009733] locus:2084851;,locus:2180464; AT5G20810,AT3G43120 auxin-induced protein Auxin-induced protein-like (Os09g0437400 protein) Q69LJ9 Q69LJ9_ORYSJ Os09g0437400 OJ1328_D07.16 OSNPB_090437400 ENOG411E3YS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E3YR CLC2 O04209 CLC2_ARATH Clathrin light chain 2 FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. 28837 Clathrin light chain 2 cell plate [GO:0009504]; chloroplast envelope [GO:0009941]; clathrin coat of coated pit [GO:0030132]; clathrin coat of trans-Golgi network vesicle [GO:0030130]; clathrin vesicle coat [GO:0030125]; cytoskeleton [GO:0005856]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; clathrin heavy chain binding [GO:0032050]; structural molecule activity [GO:0005198]; clathrin-dependent endocytosis [GO:0072583]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Expressed in root epidermal cells and root hairs (at the protein level). {ECO:0000269|PubMed:18502847}. locus:2061196; AT2G40060 Clathrin light chain NA NA NA NA NA NA NA ENOG411E3YQ PAM68 O49668,A0A1P8B8D1 PAM68_ARATH,A0A1P8B8D1_ARATH Protein PAM68, chloroplastic (PHOTOSYNTHESIS AFFECTED MUTANT 68),PAM68-like protein (DUF3464) DISRUPTION PHENOTYPE: Strongly reduced growth. Pale-green cotyledons and leaves. {ECO:0000269|PubMed:20923938}. Pale green cotyledons and leaves; Slow growth-D. Leister-2010 FUNCTION: Involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein. {ECO:0000269|PubMed:20923938}. MetaCyc:MONOMER-16601; 24212,17233 Protein PAM68, chloroplastic (PHOTOSYNTHESIS AFFECTED MUTANT 68),PAM68-like protein (DUF3464) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; photosynthesis [GO:0015979],integral component of membrane [GO:0016021] locus:1006589876; AT4G19100 protein PAM68 chloroplastic-like Os06g0319800 protein Q5Z9Z5 Q5Z9Z5_ORYSJ Os06g0319800 OSNPB_060319800 P0592B08.30 ENOG411E3YP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Auxin-responsive protein-like (Os02g0643800 protein) (cDNA, clone: J100067A09, full insert sequence),Os04g0537100 protein Q6H664,Q0JBE8 Q6H664_ORYSJ,Q0JBE8_ORYSJ Os02g0643800 OJ1282_H11.12 OSNPB_020643800,Os04g0537100 Os04g0537100 OSNPB_040537100 ENOG411E3YW F4IR19 F4IR19_ARATH Cysteine/Histidine-rich C1 domain family protein 31522 Cysteine/Histidine-rich C1 domain family protein cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2065659; AT2G37780 domain-containing protein NA NA NA NA NA NA NA ENOG411E3YV VQ13,VQ4,MPK3 O23660,Q5M750,B3H653 VQ13_ARATH,VQ4_ARATH,B3H653_ARATH VQ motif-containing protein 13 (AtVQ13) (MPK3/6-targeted VQ-motif-containing protein 2),VQ motif-containing protein 4 (AtVQ4) (MPK3/6-targeted VQ-motif-containing protein 1),VQ motif-containing protein FUNCTION: May modulate WRKY transcription factor activities. {ECO:0000250|UniProtKB:Q9M9F0}.,FUNCTION: Acts as negative regulator of WRKY33 transcription factor activity in the promotion of defense gene expression. Acts as a negative regulator of pathogen-associated molecular pattern (PAMP)-induced responses to modulate resistance to pathogens. {ECO:0000269|PubMed:24750137}. 23115,26863,26696 VQ motif-containing protein 13 (AtVQ13) (MPK3/6-targeted VQ-motif-containing protein 2),VQ motif-containing protein 4 (AtVQ4) (MPK3/6-targeted VQ-motif-containing protein 1),VQ motif-containing protein nucleus [GO:0005634],nucleus [GO:0005634]; defense response [GO:0006952]; negative regulation of cellular defense response [GO:0051245]; negative regulation of sequence-specific DNA binding transcription factor activity [GO:0043433] locus:2057676;,locus:2032200; AT2G33780,AT1G28280 VQ motif Os05g0519000 protein Q0DGP9 Q0DGP9_ORYSJ Os05g0519000 Os05g0519000 OsJ_19225 OSNPB_050519000 ENOG411E3YU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Bet v I family Os04g0593500 protein A3AWZ1 A3AWZ1_ORYSJ Os04g0593500 OsJ_15990 OSNPB_040593500 ENOG411E3YT EMB2752 Q94K18 Y4966_ARATH Uncharacterized protein At4g29660 (Protein EMBRYO DEFECTIVE 2752) Embryo defective; Cotyledon-D. Meinke-2004 12272 Uncharacterized protein At4g29660 (Protein EMBRYO DEFECTIVE 2752) integral component of membrane [GO:0016021] locus:2134433; AT4G29660 Inherit from KOG: Prenylated RAB acceptor NA NA NA NA NA NA NA ENOG411E3YK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dCTP pyrophosphatase 1-like NA NA NA NA NA NA NA ENOG411E3YJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone h2a NA NA NA NA NA NA NA ENOG411E3YI F4J480 F4J480_ARATH General transcription factor 2-related zinc finger protein 51210 General transcription factor 2-related zinc finger protein locus:504955716; AT3G29638 Inherit from NOG: zinc finger NA NA NA NA NA NA NA ENOG411E3YH CML41 Q8L3R2 CML41_ARATH Probable calcium-binding protein CML41 (Calmodulin-like protein 41) FUNCTION: Potential calcium sensor. {ECO:0000250}. 23044 Probable calcium-binding protein CML41 (Calmodulin-like protein 41) calcium ion binding [GO:0005509] locus:2078017; AT3G50770 calcium-binding protein Calmodulin-like protein (Os01g0765600 protein) (cDNA clone:002-153-B10, full insert sequence) Q94DW4 Q94DW4_ORYSJ Os01g0765600 Os01g0765600 OSNPB_010765600 P0403C05.30 ENOG411E3YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DREPP plasma membrane polypeptide Salt stress root protein RS1 Q0JPA6 SRS1_ORYSJ Os01g0233000 LOC_Os01g13210 OsJ_000980 P0702F03.6 ENOG411E3YM BHLH95 Q9FXA3 BH095_ARATH Transcription factor bHLH95 (Basic helix-loop-helix protein 95) (AtbHLH95) (bHLH 95) (Protein RETARDED GROWTH OF EMBRYO 1) (Transcription factor EN 21) (bHLH transcription factor bHLH095) DISRUPTION PHENOTYPE: Small and shriveled seeds. Retarded growth of the embryo after the heart stage, but normal morphogenesis and pattern formation of the embryo and endosperm. {ECO:0000269|PubMed:18567831}. Embryo defective; Cotyledon-M. Matsui-2008 FUNCTION: Transcription factor that controls embryo growth (PubMed:18567831, PubMed:18849529, PubMed:23318634). Regulates endosperm breakdown and embryonic epidermal development. Regulates the expression of SBT2.4/ALE1 (PubMed:18849529, PubMed:23318634). Involved in embryonic cuticle formation upstream of SBT2.4/ALE1 (PubMed:23318634). Does not seem to be a general regulator of endosperm patterning. May control specific signaling pathways that coordinate embryo invasion and breakdown of surrounding endosperm tissues (PubMed:18849529). Required for the production the embryo sheath, an extracuticular endosperm-derived structure at the surface of the embryo. Acts upstream of KRS (PubMed:28696222). {ECO:0000269|PubMed:18567831, ECO:0000269|PubMed:18849529, ECO:0000269|PubMed:23318634, ECO:0000269|PubMed:28696222}. 34183 Transcription factor bHLH95 (Basic helix-loop-helix protein 95) (AtbHLH95) (bHLH 95) (Protein RETARDED GROWTH OF EMBRYO 1) (Transcription factor EN 21) (bHLH transcription factor bHLH095) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during seed development. {ECO:0000269|PubMed:18567831}. TISSUE SPECIFICITY: Siliques. Not detected in roots, rosette leaves or flowers. Expressed in endosperm cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:18567831}. locus:2012146; AT1G49770 transcription factor Os04g0429400 protein (cDNA clone:002-150-C12, full insert sequence),Os04g0429300 protein Q0JD63,A0A0N7KJ26 Q0JD63_ORYSJ,A0A0N7KJ26_ORYSJ Os04g0429400 Os04g0429400 OSNPB_040429400,Os04g0429300 OSNPB_040429300 ENOG411E3YC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region MADS-box transcription factor 30 (OsMADS30),Os06g0667200 protein,Os06g0667266 protein Q655V4,A0A0P0WZS9,A0A0P0X097 MAD30_ORYSJ,A0A0P0WZS9_ORYSJ,A0A0P0X097_ORYSJ MADS30 Os06g0667200 LOC_Os06g45650 P0637D03.37,Os06g0667200 OSNPB_060667200,Os06g0667266 OSNPB_060667266 FUNCTION: Probable transcription factor. ENOG411E3YB NFYB5 O82248 NFYB5_ARATH Nuclear transcription factor Y subunit B-5 (AtNF-YB-5) FUNCTION: Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. 18122 Nuclear transcription factor Y subunit B-5 (AtNF-YB-5) nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. locus:2043293; AT2G47810 Nuclear transcription factor Y subunit HAP3 subunit of HAP complex (Os01g0935200 protein) (Putative HAP3-like transcriptional-activator) Q942Y5 Q942Y5_ORYSJ OsHAP3D Os01g0935200 OsJ_04677 OSNPB_010935200 P0423A12.45 P0492G09.15 ENOG411E3YA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF3711 NA NA NA NA NA NA NA ENOG411E3YG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP Os05g0595000 protein (cDNA clone:J023088B21, full insert sequence) Q5TKF8 Q5TKF8_ORYSJ Os05g0595000 Os05g0595000 OsJ_19775 OSJNBa0030I14.8 OSNPB_050595000 ENOG411E3YF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os09g0463900 protein A0A0P0XNJ4 A0A0P0XNJ4_ORYSJ Os09g0463900 OSNPB_090463900 ENOG411E3YE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0538300 protein A0A0P0WCX4 A0A0P0WCX4_ORYSJ Os04g0538300 OSNPB_040538300 ENOG411E3YD Q9LJ92 Q9LJ92_ARATH At3g22540 12511 At3g22540 locus:2077026; AT3G22540 Protein of unknown function (DUF1677) Os03g0665700 protein A0A0N7KHS5 A0A0N7KHS5_ORYSJ Os03g0665700 OSNPB_030665700 ENOG411E3Y9 SAP12 Q67YE6 SAP12_ARATH Zinc finger AN1 domain-containing stress-associated protein 12 (AtSAP12) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 20665 Zinc finger AN1 domain-containing stress-associated protein 12 (AtSAP12) zinc ion binding [GO:0008270]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200] locus:2098313; AT3G28210 zinc finger AN1 domain-containing stress-associated protein Zinc finger AN1 domain-containing stress-associated protein 17 (OsSAP17) Q6H595 SAP17_ORYSJ SAP17 Os09g0385700 LOC_Os09g21710 OSJNBa0048A13.10 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411E3Y8 TCP22 Q9C7G4 TCP22_ARATH Transcription factor TCP22 39599 Transcription factor TCP22 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2030321; AT1G72010 Transcription factor NA NA NA NA NA NA NA ENOG411E3Y3 WOX3 Q9SIB4 WOX3_ARATH WUSCHEL-related homeobox 3 (Protein PRESSED FLOWER) Abnormal flower morphology-K. Okada-2001 FUNCTION: Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. 28134 WUSCHEL-related homeobox 3 (Protein PRESSED FLOWER) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; adaxial/abaxial axis specification [GO:0009943]; cell differentiation [GO:0030154]; cell proliferation [GO:0008283]; centrolateral axis specification [GO:0009947]; flower development [GO:0009908]; plant organ development [GO:0099402]; stipule development [GO:0010865]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: First expressed in the L1 cells of the lateral regions of a flower primordium at early stage 1, in which the lateral sepals are expected to develop at a later stage. It then rapidly decreases at the late stage 1 and disappears at stage 2. At stage 3, it reappears in all four-sepal young primordia. Not detected at the central zone of the inflorescence meristem and the floral meristem. In stages 4 through 6, when four sepals develop to enclose the flower bud, it is localized at the lateral edges of the four sepals and forms an arch of the L1 cells at the margin of sepals. Expressed in the young primordia of petals and stamens. As the petals and stamens develop, it is limited at the margins of petals and stamens in a way similar to that of sepals. In the vegetative phase, it is expressed at the lateral regions of young leaf primordia, as well as in flowers and floral organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:14711878}. TISSUE SPECIFICITY: Expressed in aerial parts of seedlings, inflorescences and flowers at low level. Expressed in a restricted number of L1 cells at the lateral regions of flower primordia. {ECO:0000269|PubMed:11751640}. locus:2065484; AT2G28610 pressed flower WUSCHEL-related homeobox 3 (OsNS) (OsWOX3),Os11g0102100 protein (Os12g0101600 protein) Q33DK1,A0A0P0Y5V3 WOX3_ORYSJ,A0A0P0Y5V3_ORYSJ WOX3 Os11g0102100 LOC_Os11g01130; Os12g0101600 LOC_Os12g01120 OsJ_031341,Os12g0101600 Os11g0102100 OSNPB_110102100 OSNPB_120101600 FUNCTION: Transcription factor which may be involved in developmental processes. Seems to act as repressor of YAB5. {ECO:0000269|PubMed:17351053}. ENOG411E3Y2 AHP1 Q9ZNV9 AHP1_ARATH Histidine-containing phosphotransfer protein 1 FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay. {ECO:0000269|PubMed:10050311, ECO:0000269|PubMed:12068096, ECO:0000269|PubMed:14981318, ECO:0000269|PubMed:9804162}. 17615 Histidine-containing phosphotransfer protein 1 cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; histidine phosphotransfer kinase activity [GO:0009927]; protein histidine kinase binding [GO:0043424]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160] TISSUE SPECIFICITY: Strongly expressed in roots. {ECO:0000269|PubMed:14981318, ECO:0000269|PubMed:9804162}. locus:2089900; AT3G21510 phosphotransfer protein NA NA NA NA NA NA NA ENOG411E3Y1 IAA19 O24409 IAA19_ARATH Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) (Protein MASSUGU 2) FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}. 21494 Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) (Protein MASSUGU 2) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; stamen filament development [GO:0080086]; transcription, DNA-templated [GO:0006351] locus:2090141; AT3G15540 Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs) proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression NA NA NA NA NA NA NA ENOG411E3Y0 ARR16,RR16 Q9SHC2,F4II22 ARR16_ARATH,F4II22_ARATH Two-component response regulator ARR16,Response regulator 16 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:12354925, ECO:0000269|PubMed:14973166}. 18268,18396 Two-component response regulator ARR16,Response regulator 16 nucleus [GO:0005634]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; phosphorelay response regulator activity [GO:0000156]; cytokinin-activated signaling pathway [GO:0009736]; regulation of transcription, DNA-templated [GO:0006355] locus:2064791; AT2G40670 response regulator NA NA NA NA NA NA NA ENOG411E3Y7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF581 domain containing protein expressed OSJNBa0013K16.15 protein (Os04g0586000 protein) Q7XP52 Q7XP52_ORYSJ Os04g0586000 OsJ_15936 OSJNBa0013K16.15 OSNPB_040586000 ENOG411E3Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os01g0272700 protein (Putative NtEPc-like protein) Q5NBG2 Q5NBG2_ORYSJ P0693B08.28 Os01g0272700 OSNPB_010272700 ENOG411E3Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA strictosidine synthase NA NA NA NA NA NA NA ENOG411E3Y4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0182700 protein,Os06g0646700 protein Q6H7Z8,Q67W55 Q6H7Z8_ORYSJ,Q67W55_ORYSJ Os02g0182700 OJ1297_C09.35 OSNPB_020182700,Os06g0646700 Os06g0646700 OJ1226_A12.20 OSJNBa0062J02.4 OSNPB_060646700 ENOG411E5H2 Q5Q0D8,Q944L5 Q5Q0D8_ARATH,Q944L5_ARATH Ribosomal L32p protein family,At1g26740/T24P13_11 (Ribosomal L32p protein family) 7124,14800 Ribosomal L32p protein family,At1g26740/T24P13_11 (Ribosomal L32p protein family) mitochondrial inner membrane [GO:0005743]; mitochondrial large ribosomal subunit [GO:0005762]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:504956329;,locus:2200585; AT1G69485,AT1G26740 Ribosomal L32p protein family Os03g0168900 protein (Ribosomal protein L32 containing protein, expressed) (cDNA clone:J033106A15, full insert sequence),Os10g0407100 protein (Ribosomal protein L32 containing protein, expressed) (cDNA clone:J013083M02, full insert sequence) (cDNA clone:J023070G01, full insert sequence) Q8S7V4,Q7XEU1 Q8S7V4_ORYSJ,Q7XEU1_ORYSJ OSJNBa0091P11.11 LOC_Os03g07290 Os03g0168900 OsJ_09566 OSNPB_030168900,Os10g0407100 OSJNBa0060A14.18 LOC_Os10g26690 Os10g0407100 OsJ_31473 OSNPB_100407100 ENOG411E5H4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os09g0367900 protein (Fragment),Os08g0407600 protein (cDNA clone:J013119L03, full insert sequence),Os09g0367900 protein Q0J293,Q6Z9W8,A0A0P0XLD8 Q0J293_ORYSJ,Q6Z9W8_ORYSJ,A0A0P0XLD8_ORYSJ Os09g0367900 OSNPB_090367900,Os08g0407600 Os08g0407600 OSNPB_080407600 P0453D01.23 ENOG411E5HB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein Dirigent protein Q2R8V6 Q2R8V6_ORYSJ Os11g0215100 LOC_Os11g10870 Os11g0215100 OSNPB_110215100 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E5HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome c/c1 heme lyase NA NA NA NA NA NA NA ENOG411E5HE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family 19 kDa globulin (Alpha-globulin) (allergen Ory s 19kD) P29835 GL19_ORYSJ Os05g0499100 LOC_Os05g41970 OJ1057_B02.5 OsJ_19079 P0010D04.16 FUNCTION: Seed storage protein. {ECO:0000305}. ENOG411E5HI Q9LY93 Q9LY93_ARATH At5g14360 (Ubiquitin-like superfamily protein) (Uncharacterized protein F18O22_150) 18472 At5g14360 (Ubiquitin-like superfamily protein) (Uncharacterized protein F18O22_150) locus:2145683; AT5G14360 ubiquitin family Os02g0597700 protein (Ubiquitin-like protein) Q6K5J0 Q6K5J0_ORYSJ Os02g0597700 OJ1212_D02.4 OJ1568_B05.26 OSNPB_020597700 ENOG411DTE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain Os07g0670200 protein (Shock protein SRC2-like protein) (cDNA, clone: J075083N20, full insert sequence),Os07g0670300 protein (Putative shock protein SRC2) (cDNA clone:006-208-F08, full insert sequence) (cDNA clone:J013119K22, full insert sequence) Q8GRM0,Q8GS52 Q8GRM0_ORYSJ,Q8GS52_ORYSJ P0470D12.104 P0625E02.135 Os07g0670200 OSNPB_070670200,P0470D12.106 P0625E02.137 Os07g0670300 OsJ_25520 OSNPB_070670300 ENOG411DVB5 LURP1 Q9LQ36,Q9ZQR8,A0A1P8B016,A0A1P8AZY8,A0A1P8AVP9 LOR1_ARATH,LURP1_ARATH,A0A1P8B016_ARATH,A0A1P8AZY8_ARATH,A0A1P8AVP9_ARATH Protein LURP-one-related 1,Protein LURP1 (Protein LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 1),LURP-one-like protein (DUF567) DISRUPTION PHENOTYPE: No visible phenotype. Reduced basal and R-protein-mediated disease resistances. {ECO:0000269|PubMed:18346188}. Compromised in RPP4-mediated resistance. Mutants allow increased growth of Hyaloperonospora parasitica hyphae frequently surrounded by a trail of necrotic plant cells. Susceptible to oomycete infection-T. Eulgem-2008 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}.,FUNCTION: Involved in basal defense against virulent oomycetes. Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors (By similarity). {ECO:0000250}. 25451,22987,30242,27271,20707 Protein LURP-one-related 1,Protein LURP1 (Protein LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 1),LURP-one-like protein (DUF567) defense response to fungus [GO:0050832]; response to salicylic acid [GO:0009751] TISSUE SPECIFICITY: Limited to discrete pathogen infection sites in leaves. locus:2055250; AT1G33840,AT2G14560 LURP-one-related Os07g0230700 protein (cDNA clone:J023037H24, full insert sequence) Q84YM9 Q84YM9_ORYSJ Os07g0230700 OSJNBa0086N05.106 OSNPB_070230700 ENOG411EHI9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5HX F8K7.16 Q9XI04 Q9XI04_ARATH F8K7.16 (Transmembrane protein) 27542 F8K7.16 (Transmembrane protein) integral component of membrane [GO:0016021] locus:5019474616; AT1G21722 NA NA NA NA NA NA NA NA ENOG411EMH8 Q8H0U3,A0A1P8AUF8 Q8H0U3_ARATH,A0A1P8AUF8_ARATH ARM repeat superfamily protein (At1g23180) (Uncharacterized protein At1g23180),ARM repeat superfamily protein 91694,68961 ARM repeat superfamily protein (At1g23180) (Uncharacterized protein At1g23180),ARM repeat superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2201205; AT1G23180 Kinesin-associated protein (KAP) NA NA NA NA NA NA NA ENOG411EMH2 PUB3 Q8GWV5,A8MQL6 PUB3_ARATH,A8MQL6_ARATH U-box domain-containing protein 3 (EC 2.3.2.27) (Plant U-box protein 3) (RING-type E3 ubiquitin transferase PUB3),RING-type E3 ubiquitin transferase (EC 2.3.2.27) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination.,PATHWAY: Protein modification; protein ubiquitination. {ECO:0000256|SAAS:SAAS00771976}. 2.3.2.27 83779,79710 U-box domain-containing protein 3 (EC 2.3.2.27) (Plant U-box protein 3) (RING-type E3 ubiquitin transferase PUB3),RING-type E3 ubiquitin transferase (EC 2.3.2.27) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842],ubiquitin-protein transferase activity [GO:0004842] locus:2102455; AT3G54790 armadillo beta-catenin repeat family protein NA NA NA NA NA NA NA ENOG411EMHB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Defense related protein that negatively regulates programmed cell death. In vitro possesses E3 ubiquitin ligase activity E3 ubiquitin-protein ligase SPL11 (EC 2.3.2.27) (Cell death-related protein SPL11) (Protein spotted leaf 11) (RING-type E3 ubiquitin transferase SPL11),Os12g0570000 protein (Fragment) Q0IMG9,A0A0N7KU87 SL11_ORYSJ,A0A0N7KU87_ORYSJ SPL11 Os12g0570000 LOC_Os12g38210,Os12g0570000 OSNPB_120570000 DISRUPTION PHENOTYPE: Lesion mimic (spontaneous cell death) phenotype. Expression of defense-related genes and enhanced non-race-specific resistance to rice blast fungus (M.oryzea) and to bacterial blight (X.oryzae pv oryzae). Delay in flowering time under long day (LD) conditions. {ECO:0000269|PubMed:15377756}. FUNCTION: E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. {ECO:0000269|PubMed:15377756, ECO:0000269|PubMed:18586868}. ENOG411EMHC ARIA B9DHT4,F4K132 ARIA_ARATH,F4K132_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 (ARIA),ARM repeat protein interacting with ABF2 DISRUPTION PHENOTYPE: Abscisic acid (ABA) and glucose insensitivities. More efficient germination and postgermination growth. {ECO:0000269|PubMed:15516505}. Mutant seeds germinated more efficiently than wild-type seeds under normal growing conditions. Young seedlings were larger than wild type. Mutant seed germination was less sensitive to ABA inhibition than wild-type seeds at high concentrations of ABA. FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth. {ECO:0000250, ECO:0000269|PubMed:15516505}. PATHWAY: Protein modification; protein ubiquitination. 78186,69610 ARM REPEAT PROTEIN INTERACTING WITH ABF2 (ARIA),ARM repeat protein interacting with ABF2 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; negative regulation of seed germination [GO:0010187]; protein ubiquitination [GO:0016567]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Detected in embryos and most of the vegetative and reproductive organs. {ECO:0000269|PubMed:15516505}. locus:2150295; AT5G19330 BTB/POZ domain Os05g0398100 protein (Fragment) A0A0P0WM47 A0A0P0WM47_ORYSJ Os05g0398100 OSNPB_050398100 ENOG411EMHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit NA NA NA NA NA NA NA ENOG411EMHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain-containing protein 43-like RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q2QU07 Q2QU07_ORYSJ LOC_Os12g17900 Os12g0277400 OsJ_35755 OSNPB_120277400 ENOG411EAFH HBI1 Q9ZPW3,F4IQH8 HBI1_ARATH,F4IQH8_ARATH Transcription factor HBI1 (Basic helix-loop-helix protein 64) (AtbHLH64) (bHLH 64) (Protein HOMOLOG OF BEE2 INTERACTING WITH IBH1) (Transcription factor EN 79) (bHLH transcription factor bHLH064),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein FUNCTION: Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. MISCELLANEOUS: Plants over-expressing HBI1 show increased petiole length and early flowering, and plants suppressing HBI1 display dwarf, short-petiole and late-flowering phenotype. Although HBI1 contains a degenerate basic motif it can bind DNA in vitro. {ECO:0000305|PubMed:23221598}. 37747,40875 Transcription factor HBI1 (Basic helix-loop-helix protein 64) (AtbHLH64) (bHLH 64) (Protein HOMOLOG OF BEE2 INTERACTING WITH IBH1) (Transcription factor EN 79) (bHLH transcription factor bHLH064),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; brassinosteroid mediated signaling pathway [GO:0009742]; gibberellic acid mediated signaling pathway [GO:0009740]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],bHLH transcription factor binding [GO:0043425]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; mRNA transcription [GO:0009299]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; response to hormone [GO:0009725]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:23221598}. locus:2062090; AT2G18300 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EAFN CRK45,ARCK1 Q8GY82,B3H4R6,F4JPT7 CRK45_ARATH,B3H4R6_ARATH,F4JPT7_ARATH Cysteine-rich receptor-like protein kinase 45 (Cysteine-rich RLK45) (EC 2.7.11.1) (ABA- and osmotic stress-inducible receptor-like cytosolic kinase 1),Protein kinase superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seedlings show increased sensitivity to abscisic acid (ABA) and salt stress during post-germinative growth (PubMed:22225700). Increased susceptibility to P.syringae infection. Weak expression of pathogenesis-related (PR) genes after infection with P.syringae or salicylic acid (SA) treatment (PubMed:24215930). {ECO:0000269|PubMed:22225700, ECO:0000269|PubMed:24215930}. FUNCTION: Forms a complex with CRK36 that may negatively control abscisic acid (ABA) and osmotic stress signal transduction (PubMed:22225700). Involved in plant response to ABA during seed germination, early seedling growth and responses to abiotic stresses by inducing the expression of ABA-responsive genes and stress-inducible genes (PubMed:23583936). Acts as positive regulator in disease resistance, downstream of NPR1 and WRKY70 (PubMed:24215930). {ECO:0000269|PubMed:22225700, ECO:0000269|PubMed:23583936, ECO:0000269|PubMed:24215930}. 2.7.11.1 40231,27329,40518 Cysteine-rich receptor-like protein kinase 45 (Cysteine-rich RLK45) (EC 2.7.11.1) (ABA- and osmotic stress-inducible receptor-like cytosolic kinase 1),Protein kinase superfamily protein cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response [GO:0006952]; positive regulation of defense response [GO:0031349]; regulation of abscisic acid-activated signaling pathway [GO:0009787],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; defense response to fungus [GO:0050832]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:2137065; AT4G11890 STYKc NA NA NA NA NA NA NA ENOG411EAFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAFF ETP2 Q9LJ74,Q9LHM8,F4J9X3,A0A1I9LMH3,F4J9X5,F4J9X4,A0A1I9LMH4 FB161_ARATH,Q9LHM8_ARATH,F4J9X3_ARATH,A0A1I9LMH3_ARATH,F4J9X5_ARATH,F4J9X4_ARATH,A0A1I9LMH4_ARATH F-box protein ETP2 (EIN2 targeting protein 2),F-box/associated interaction domain protein,Ternary complex factor MIP1 leucine-zipper protein DISRUPTION PHENOTYPE: No visible phenotype, probably due to the redundancy with ETP1. {ECO:0000269|PubMed:19196655}. FUNCTION: Negative regulator of EIN2 protein stability. {ECO:0000269|PubMed:19196655}. MISCELLANEOUS: Double knock-down mutants of ETP1 and ETP2 show an accumulation of EIN2 protein and a constitutive ethylene response. {ECO:0000269|PubMed:19196655}. 44619,21907,50984,60488,52653,44983,59889 F-box protein ETP2 (EIN2 targeting protein 2),F-box/associated interaction domain protein,Ternary complex factor MIP1 leucine-zipper protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2085834;,locus:2087906; AT3G18910,AT3G18900 Protein of unknown function DUF547 NA NA NA NA NA NA NA ENOG411EAFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Coproporphyrinogen III oxidase NA NA NA NA NA NA NA ENOG411EAFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain Os02g0825700 protein (cDNA clone:J033044N10, full insert sequence),Os02g0825500 protein (cDNA clone:J013135H15, full insert sequence),Os02g0825301 protein,Os02g0826675 protein,Os02g0826566 protein,Os02g0826050 protein,Os04g0484000 protein,Os02g0826700 protein,Os02g0826000 protein,Os04g0483800 protein,Os02g0824900 protein B7EM62,Q6KA98,A0A0P0VRG8,A0A0P0VRI7,A0A0P0VRN2,A0A0P0VRP6,A0A0P0WBV5,A0A0P0VRI1,A0A0P0VRK2,A0A0P0WBM7,A0A0P0VRF3 B7EM62_ORYSJ,Q6KA98_ORYSJ,A0A0P0VRG8_ORYSJ,A0A0P0VRI7_ORYSJ,A0A0P0VRN2_ORYSJ,A0A0P0VRP6_ORYSJ,A0A0P0WBV5_ORYSJ,A0A0P0VRI1_ORYSJ,A0A0P0VRK2_ORYSJ,A0A0P0WBM7_ORYSJ,A0A0P0VRF3_ORYSJ Os02g0825700 OSNPB_020825700,Os02g0825500 OJ1063_D06.21 OsJ_08948 OSNPB_020825500,Os02g0825301 OSNPB_020825301,Os02g0826675 OSNPB_020826675,Os02g0826566 OSNPB_020826566,Os02g0826050 OSNPB_020826050,Os04g0484000 OSNPB_040484000,Os02g0826700 OSNPB_020826700,Os02g0826000 OSNPB_020826000,Os04g0483800 OSNPB_040483800,Os02g0824900 OSNPB_020824900 ENOG411EAFR CYCT1-1 Q9C8P7 CCT11_ARATH Putative cyclin-T1-1 (CycT1;1) R-ATH-674695;R-ATH-6796648; 28538 Putative cyclin-T1-1 (CycT1;1) cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944] locus:2008698; AT1G35440 Cyclin N-terminal domain NA NA NA NA NA NA NA ENOG411EAFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411EAFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family Mitochondrial import inner membrane translocase subunit Tim17 family protein (Os03g0415800 protein) (Putative inner mitochondrial membrane translocase),Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed (Os03g0415500 protein),Os03g0415700 protein (Fragment) Q75IW4,Q10JL7,A0A0P0VYQ5 Q75IW4_ORYSJ,Q10JL7_ORYSJ,A0A0P0VYQ5_ORYSJ OSJNBb0059G13.16 Os03g0415800 LOC_Os03g30230 OSNPB_030415800,Os03g0415500 LOC_Os03g30200 Os03g0415500 OSNPB_030415500,Os03g0415700 OSNPB_030415700 ENOG411EAFW EXPB5 Q9M203,A0A1I9LMX0 EXPB5_ARATH,A0A1I9LMX0_ARATH Expansin-B5 (At-EXPB5) (AtEXPB5) (Ath-ExpBeta-1.3) (Beta-expansin-5),Expansin B5 FUNCTION: May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). {ECO:0000250}. 28688,23412 Expansin-B5 (At-EXPB5) (AtEXPB5) (Ath-ExpBeta-1.3) (Beta-expansin-5),Expansin B5 cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; cell wall organization [GO:0071555]; sexual reproduction [GO:0019953],extracellular region [GO:0005576]; sexual reproduction [GO:0019953] AT3G60570 Pollen allergen NA NA NA NA NA NA NA ENOG411EAF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ca2+-ATPase N terminal autoinhibitory domain NA NA NA NA NA NA NA ENOG411EAF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Adaptor complexes medium subunit family Coatomer subunit delta-3 (Delta-coat protein 3) (Archain) (Delta-COP 3),Coatomer subunit delta-4 (Delta-coat protein 4) (Delta-COP 4),Coatomer subunit delta P49661,Q0J649,A0A0P0WKG5 COPD3_ORYSJ,COPD4_ORYSJ,A0A0P0WKG5_ORYSJ Os01g0833700 LOC_Os01g61710 P0460C04.25,Os08g0368000 LOC_Os08g28080,Os05g0311000 OSNPB_050311000 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.,FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. {ECO:0000256|RuleBase:RU364018}. ENOG411EAF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EAF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand_Ca_insen Os03g0715600 protein (cDNA, clone: J065203L09, full insert sequence) A3AM33 A3AM33_ORYSJ Os03g0715600 OsJ_12352 OSNPB_030715600 ENOG411EAF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HEAT repeat NA NA NA NA NA NA NA ENOG411DVHM HSFA8 Q9S7U5 HSFA8_ARATH Heat stress transcription factor A-8 (AtHsfA8) (AtHsf-03) (Heat shock factor protein 5) (HSF 5) (Heat shock transcription factor 5) (HSTF 5) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 42630 Heat stress transcription factor A-8 (AtHsfA8) (AtHsf-03) (Heat shock factor protein 5) (HSF 5) (Heat shock transcription factor 5) (HSTF 5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2200171; AT1G67970 heat stress transcription factor NA NA NA NA NA NA NA ENOG411E1QF RTNLB16 Q8GYH6,F4J500,F4J502,F4J4Z7,A0A1I9LP93,B3H6K8 RTNLP_ARATH,F4J500_ARATH,F4J502_ARATH,F4J4Z7_ARATH,A0A1I9LP93_ARATH,B3H6K8_ARATH Reticulon-like protein B16 (AtRTNLB16),Reticulon-like protein 25347,28342,18170,21922,28265,25475 Reticulon-like protein B16 (AtRTNLB16),Reticulon-like protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:1005716554; AT3G10915 Reticulon-like protein Reticulon-like protein Q10LS6 Q10LS6_ORYSJ LOC_Os03g21840 Os03g0336600 OSNPB_030336600 ENOG411E1QC A0A1P8AW87,F4I4J4 A0A1P8AW87_ARATH,F4I4J4_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 84766,84633 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein kinase activity [GO:0004672]; response to stress [GO:0006950] locus:2015656; AT1G16760 U-box domain-containing protein 35-like NA NA NA NA NA NA NA ENOG411EMF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AhpC/TSA family NA NA NA NA NA NA NA ENOG411EMF1 Q9ZUU2 AAED1_ARATH Thioredoxin-like protein AAED1, chloroplastic (AhpC/TSA antioxidant enzyme domain-containing protein 1) 26605 Thioredoxin-like protein AAED1, chloroplastic (AhpC/TSA antioxidant enzyme domain-containing protein 1) chloroplast [GO:0009507]; antioxidant activity [GO:0016209]; oxidation-reduction process [GO:0055114] locus:2049801; AT2G37240 AhpC/TSA family NA NA NA NA NA NA NA ENOG411EMF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like NA NA NA NA NA NA NA ENOG411EI50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2JK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0884700 protein A0A0P0VBA4 A0A0P0VBA4_ORYSJ Os01g0884700 OSNPB_010884700 ENOG411E2JJ RIDA,RidA Q94JQ4,A0A1I9LS34 RIDA_ARATH,A0A1I9LS34_ARATH Reactive Intermediate Deaminase A, chloroplastic (EC 3.5.99.10) (2-iminobutanoate/2-iminopropanoate deaminase),Endoribonuclease L-PSP family protein DISRUPTION PHENOTYPE: Reduced root growth and increased sensitivity of the root to added Ser. {ECO:0000269|PubMed:25070638}. FUNCTION: Hydrolyzes the Ser-derived enamine/imine product of Thr dehydratase, protecting the plastidial branched-chain aminotransferase BCAT3 (AC Q9M401) from inactivation. Involved in Ile biosynthesis. {ECO:0000269|PubMed:25070638}. PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from L-threonine. 3.5.99.10 19816,27800 Reactive Intermediate Deaminase A, chloroplastic (EC 3.5.99.10) (2-iminobutanoate/2-iminopropanoate deaminase),Endoribonuclease L-PSP family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid [GO:0009536]; thylakoid [GO:0009579]; vacuole [GO:0005773]; deaminase activity [GO:0019239]; hydrolase activity [GO:0016787]; branched-chain amino acid biosynthetic process [GO:0009082]; isoleucine biosynthetic process [GO:0009097]; response to cadmium ion [GO:0046686]; response to toxic substance [GO:0009636],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in leaves, petiols, petals, carpels and shoot apex. {ECO:0000303|PubMed:25070638}. locus:2092374; AT3G20390 endoribonuclease L-PSP family protein Os07g0516200 protein (Putative translational inhibitor protein) (cDNA clone:006-304-F08, full insert sequence) Q8H4B9 Q8H4B9_ORYSJ P0048D08.132 Os07g0516200 OsJ_24449 OSNPB_070516200 P0650C03.11 ENOG411E2JI TAF10 O04173 TAF10_ARATH Transcription initiation factor TFIID subunit 10 (Protein SALT TOLERANCE DURING GERMINATION 1) (TBP-associated factor 10) (AtTAF10) (TBP-associated factor II 15) FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Involved in osmotic stress adaptation during the germination stage and in gene expression related to meristem activity and leaf development. {ECO:0000269|PubMed:16945932, ECO:0000269|PubMed:17148695}. MISCELLANEOUS: Overexpression of TAF10 results in salt tolerance during seed germination while knock-down mutants are more sensitive to osmotic stress (PubMed:16945932) and display several abnormal phenotypes involved in meristem activity and leaf development (PubMed:17148695). {ECO:0000305|PubMed:16945932, ECO:0000305|PubMed:17148695}. R-ATH-5689880;R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 14913 Transcription initiation factor TFIID subunit 10 (Protein SALT TOLERANCE DURING GERMINATION 1) (TBP-associated factor 10) (AtTAF10) (TBP-associated factor II 15) nucleus [GO:0005634]; DNA-templated transcription, initiation [GO:0006352]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed transiently during the development of several organs such as lateral roots, rosette leaves and most floral organs. {ECO:0000269|PubMed:17148695}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves and inflorescences. Expressed preferentially in the vascular bundles and bundle sheath cells of cotyledons, the phloem of hypocotyls and the central cylinders of roots. {ECO:0000269|PubMed:15527982, ECO:0000269|PubMed:17148695}. locus:2124884; AT4G31720 transcription initiation factor TFIID subunit Transcription initiation factor TFIID subunit 10 Q69MK0,A0A0P0XNG6 Q69MK0_ORYSJ,A0A0P0XNG6_ORYSJ Os09g0431500 Os09g0431500 OsJ_29461 OSJNBa0016E03.39 OSJNBa0039E17.3 OSNPB_090431500,Os09g0431500 OSNPB_090431500 FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000256|PIRNR:PIRNR017246}. ENOG411E2JH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain NA NA NA NA NA NA NA ENOG411E2JN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SSXT protein (N-terminal region) Os11g0615200 protein (SSXT protein containing protein, expressed) (cDNA, clone: J075095O13, full insert sequence),Os12g0496900 protein (SSXT protein containing protein, expressed) (cDNA clone:001-119-G03, full insert sequence) Q2R176,Q2QQE2 Q2R176_ORYSJ,Q2QQE2_ORYSJ LOC_Os11g40100 Os11g0615200 OsJ_34626 OSNPB_110615200,Os12g0496900 LOC_Os12g31350 Os12g0496900 OsJ_36164 OSNPB_120496900 ENOG411E2JM F4K162 F4K162_ARATH Histone superfamily protein 29560 Histone superfamily protein nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982] locus:2180786; AT5G19490 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Os05g0494100 protein (Repressor protein) (cDNA clone:J013150F08, full insert sequence),Os05g0494100 protein (Fragment) Q65X80,A0A0N7KL07 Q65X80_ORYSJ,A0A0N7KL07_ORYSJ OsDrAp2 Os05g0494100 OJ1579_G03.2 OsJ_19042 OSNPB_050494100,Os05g0494100 OSNPB_050494100 ENOG411E2JC Q84JE5 Q84JE5_ARATH Cytomatrix protein-like protein (Uncharacterized protein At1g19980) 39099 Cytomatrix protein-like protein (Uncharacterized protein At1g19980) locus:2198586; AT1G19980 NA OSJNBb0050O03.10 protein (Os04g0117200 protein) Q7XT12 Q7XT12_ORYSJ Os04g0117200 OSJNBb0050O03.10 OSNPB_040117200 ENOG411E2JB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD homeobox protein At4g24660-like Zinc-finger homeodomain protein 11 (OsZHD11) Q10DV5 ZHD11_ORYSJ ZHD11 Os03g0718500 LOC_Os03g50920 OsJ_12364 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411E2JA EMB3143 Q9LVM3 Q9LVM3_ARATH YCF54 Embryo defective; Cotyledon-D. Meinke-2011 24104 YCF54 chloroplast [GO:0009507]; thylakoid [GO:0009579] locus:2161218; AT5G58250 Protein of unknown function (DUF2488) Expressed protein (Os03g0331600 protein) (cDNA clone:001-121-D08, full insert sequence) Q10LX5 Q10LX5_ORYSJ LOC_Os03g21370 Os03g0331600 OSNPB_030331600 ENOG411E2JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin-induced in root cultures protein Os09g0501100 protein,Os12g0448650 protein A0A0P0XNR3,A0A0P0YAE4 A0A0P0XNR3_ORYSJ,A0A0P0YAE4_ORYSJ Os09g0501100 OSNPB_090501100,Os12g0448650 OSNPB_120448650 ENOG411E2JF RPL27AC P49637 R27A3_ARATH 60S ribosomal protein L27a-3 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 16455 60S ribosomal protein L27a-3 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255] locus:2033637; AT1G70600 60S ribosomal protein 60S ribosomal protein L27a-3, putative, expressed (Os03g0408300 protein) (Putative ribosomal protein L27a),Os02g0175600 protein (Putative 60S ribosomal protein L27a) (cDNA clone:J023061G23, full insert sequence) Q84MQ4,Q6EUQ7 Q84MQ4_ORYSJ,Q6EUQ7_ORYSJ OSJNBa0030J19.9 LOC_Os03g29460 Os03g0408300 OsJ_11217 OSNPB_030408300,Os02g0175600 Os02g0175600 OJ1077_E05.13 OSNPB_020175600 ENOG411E2JE MEE60 Q9FI91 Q9FI91_ARATH At5g05950 (Maternal effect embryo arrest 60) (Uncharacterized protein At5g05950) 18741 At5g05950 (Maternal effect embryo arrest 60) (Uncharacterized protein At5g05950) integral component of membrane [GO:0016021]; embryo development ending in seed dormancy [GO:0009793] locus:2153689; AT5G05950 NA Os07g0240400 protein Q7F0B3 Q7F0B3_ORYSJ P0523A04.123 Os07g0240400 OsJ_23661 OSNPB_070240400 ENOG411E2JD GATA18 Q8LC79 GAT18_ARATH GATA transcription factor 18 Embryo and seedling defective-W. Lukowitz-2002 FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. 31832 GATA transcription factor 18 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; embryo development ending in seed dormancy [GO:0009793]; regulation of flower development [GO:0009909]; regulation of transcription, DNA-templated [GO:0006355] locus:2077932; AT3G50870 transcription factor NA NA NA NA NA NA NA ENOG411E2JZ Q6AWW6 Q6AWW6_ARATH At2g47310 (Flowering time control protein-related / FCA gamma-like protein) (Putative FCA-related protein) 58366 At2g47310 (Flowering time control protein-related / FCA gamma-like protein) (Putative FCA-related protein) RNA binding [GO:0003723] locus:2065190; AT2G47310 Flowering time control NA NA NA NA NA NA NA ENOG411E2JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein NA NA NA NA NA NA NA ENOG411E2JX GIF2,GIF3 Q9MAL9,Q93VH6,A0A1P8B4F6,F4HQJ3 GIF2_ARATH,GIF3_ARATH,A0A1P8B4F6_ARATH,F4HQJ3_ARATH GRF1-interacting factor 2 (AtGIF2) (Transcription coactivator GIF2),GRF1-interacting factor 3 (AtGIF3) (Transcription coactivator GIF3),GRF1-interacting factor 3,GRF1-interacting factor 2 FUNCTION: Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity). Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (By similarity). GIFs are involved in the positive regulation of cell proliferation of lateral organs in a functionally redundant manner. {ECO:0000250, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:19648231}. 21039,23770,24866,24882 GRF1-interacting factor 2 (AtGIF2) (Transcription coactivator GIF2),GRF1-interacting factor 3 (AtGIF3) (Transcription coactivator GIF3),GRF1-interacting factor 3,GRF1-interacting factor 2 transcription coactivator activity [GO:0003713]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription coactivator activity [GO:0003713]; cell proliferation [GO:0008283]; leaf development [GO:0048366]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; transcription coactivator activity [GO:0003713],nucleus [GO:0005634]; transcription coactivator activity [GO:0003713]; cell proliferation [GO:0008283]; leaf development [GO:0048366] TISSUE SPECIFICITY: Predominantly expressed in shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers. {ECO:0000269|PubMed:15326298}. locus:2134558;,locus:2035232; AT1G01160,AT4G00850 GRF-interacting factor 2 NA NA NA NA NA NA NA ENOG411E2JS MLP423 Q93VR4 ML423_ARATH MLP-like protein 423 17054 MLP-like protein 423 membrane [GO:0016020]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2199932; AT1G24020 MLP-like protein OSJNBb0048E02.12 protein (Os04g0465600 protein) (cDNA clone:001-024-E05, full insert sequence) Q7XUY5 Q7XUY5_ORYSJ Os04g0465600 OsJ_15102 OSJNBb0048E02.12 OSNPB_040465600 ENOG411E2JR DMP1 Q9LVF4 DMP1_ARATH Protein DMP1 (AtDMP1) FUNCTION: Involved in membrane remodeling including fission during breakdown of the endoplasmic reticulum (ER) and the tonoplast during leaf senescence and in membrane fusion during vacuole biogenesis in roots. {ECO:0000269|PubMed:22530652}. 22058 Protein DMP1 (AtDMP1) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; endomembrane system organization [GO:0010256]; endoplasmic reticulum membrane organization [GO:0090158]; membrane fission [GO:0090148]; membrane fusion [GO:0061025]; plant organ senescence [GO:0090693] DEVELOPMENTAL STAGE: Accumulates in tissues undergoing senescence (PubMed:20712629, PubMed:22530652). In roots tips, strongly expressed in the cortex undergoing vacuole biogenesis (PubMed:22530652). {ECO:0000269|PubMed:20712629, ECO:0000269|PubMed:22530652}. TISSUE SPECIFICITY: Expressed in leaves, siliques and roots. {ECO:0000269|PubMed:20712629, ECO:0000269|PubMed:22530652}. locus:2089915; AT3G21520 Protein of unknown function (DUF679) Os07g0645300 protein Q7EYL4 Q7EYL4_ORYSJ P0503D09.101 Os07g0645300 OSNPB_070645300 ENOG411E2JQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor Os08g0432300 protein A0A0P0XGC2 A0A0P0XGC2_ORYSJ Os08g0432300 OSNPB_080432300 ENOG411E2JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain Germin-like protein 8-13 Q6Z964 GL813_ORYSJ Os08g0459700 LOC_Os08g35750 OsJ_026468 P0493A04.37 P0690E03.5 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411E2JW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2JV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os11g0150450 protein (RING zinc finger protein, putative) (Zinc finger, C3HC4 type family protein) (cDNA, clone: J100090P21, full insert sequence),Os12g0149100 protein (Fragment) Q53PZ1,C7J9H4 Q53PZ1_ORYSJ,C7J9H4_ORYSJ Os11g0150450 LOC_Os11g05300 OSNPB_110150450,Os12g0149100 Os12g0149100 OSNPB_120149100 ENOG411E2JU Q7XA63 Q7XA63_ARATH At5g19860 (Uncharacterized protein At5g19860) 20443 At5g19860 (Uncharacterized protein At5g19860) vacuole [GO:0005773] locus:2147610; AT5G19860 Protein of unknown function DUF538 Os05g0221200 protein (Similar to 2o545-prov protein) (cDNA clone:J023064E04, full insert sequence),Expressed protein (Os03g0693400 protein) (cDNA clone:006-201-F11, full insert sequence),Os05g0221200 protein Q75G49,Q10EV2,A0A0P0WJE6 Q75G49_ORYSJ,Q10EV2_ORYSJ,A0A0P0WJE6_ORYSJ OSJNBb0043H23.6 Os05g0221200 B1003C08.8 OsJ_17587 OSNPB_050221200,LOC_Os03g48710 Os03g0693400 OSNPB_030693400,Os05g0221200 OSNPB_050221200 ENOG411E2JT emb2735 Q9FFZ3 Q9FFZ3_ARATH Embryo defective 2735 (Uncharacterized protein At5g06240) Embryo defective; Cotyledon-D. Meinke-2003 18529 Embryo defective 2735 (Uncharacterized protein At5g06240) locus:2160727; AT5G06240 NA Os05g0112750 protein (cDNA, clone: J065093C22, full insert sequence),Os08g0228550 protein Q75L19,A0A0P0XDB4 Q75L19_ORYSJ,A0A0P0XDB4_ORYSJ Os05g0112750 Os05g0112750 OSJNBb0041A22.1 OSNPB_050112750 P0016H04.22,Os08g0228550 OSNPB_080228550 ENOG411E2J9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA actin-depolymerizing factor NA NA NA NA NA NA NA ENOG411E2J8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os07g0298900 protein (Putative heavy-metal-associated domain-containing protein) Q6YSW8 Q6YSW8_ORYSJ Os07g0298900 B1032F05.3 OSNPB_070298900 P0680C01.37 ENOG411E2J3 Q8GYK6,Q9MAU1,A0A1P8AV54,F4IUR2,F4I764 Q8GYK6_ARATH,Q9MAU1_ARATH,A0A1P8AV54_ARATH,F4IUR2_ARATH,F4I764_ARATH Proline-rich family protein (Uncharacterized protein At2g32840),F13M7.8 protein (Hydroxyproline-rich glycoprotein family protein),Hydroxyproline-rich glycoprotein family protein,Proline-rich family protein 37383,36794,26471,31923,40091 Proline-rich family protein (Uncharacterized protein At2g32840),F13M7.8 protein (Hydroxyproline-rich glycoprotein family protein),Hydroxyproline-rich glycoprotein family protein,Proline-rich family protein transcriptional repressor complex [GO:0017053]; cell cycle [GO:0007049] locus:2046382;,locus:2010632; AT2G32840,AT1G04930 NA Os03g0234600 protein A0A0P0VV48 A0A0P0VV48_ORYSJ Os03g0234600 OSNPB_030234600 ENOG411E2J2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os05g0501200 protein A0A0P0WPD3 A0A0P0WPD3_ORYSJ Os05g0501200 OSNPB_050501200 ENOG411E2J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Cysteine proteinase-like (Os01g0613800 protein) (cDNA clone:002-172-A05, full insert sequence),Cysteine proteinase-like (Os01g0613500 protein) (cDNA clone:J023048F12, full insert sequence) Q9FTI1,Q9FTI3 Q9FTI1_ORYSJ,Q9FTI3_ORYSJ Os01g0613800 OsJ_02595 OSNPB_010613800 P0410E01.33,Os01g0613500 Os01g0613500 OSNPB_010613500 P0410E01.28 ENOG411E2J0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hyaluronan / mRNA binding family Os01g0721900 protein (Putative nuclear RNA binding protein A),Os05g0533100 protein (Fragment) Q8W0D1,Q0DGH0 Q8W0D1_ORYSJ,Q0DGH0_ORYSJ P0690B02.26-1 Os01g0721900 OSNPB_010721900,Os05g0533100 Os05g0533100 OSNPB_050533100 ENOG411E2J7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum OSJNBa0013K16.18 protein (Os04g0586500 protein) (cDNA clone:002-103-E04, full insert sequence) Q7XP49 Q7XP49_ORYSJ Os04g0586500 Os04g0586500 OsJ_30771 OSJNBa0013K16.18 OSNPB_040586500 ENOG411E2J6 MVA3.30 O49465,F4JT80,A0A1P8B4Q1,Q9FN83,Q9SZ66,A0A1P8B4P3,A0A1P8BBS7,A0A1P8B4P0,A0A1P8B4P4,A0A1P8B4P2,F4JNL2,F4JT81,A0A1P8B5C1,F4KD49,F4KIC7 O49465_ARATH,F4JT80_ARATH,A0A1P8B4Q1_ARATH,Q9FN83_ARATH,Q9SZ66_ARATH,A0A1P8B4P3_ARATH,A0A1P8BBS7_ARATH,A0A1P8B4P0_ARATH,A0A1P8B4P4_ARATH,A0A1P8B4P2_ARATH,F4JNL2_ARATH,F4JT81_ARATH,A0A1P8B5C1_ARATH,F4KD49_ARATH,F4KIC7_ARATH Leucine-rich repeat (LRR) family protein (Uncharacterized protein AT4g19470) (Uncharacterized protein F24J7.30),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein (TMV N-like)),Toll-Interleukin-Resistance (TIR) domain family protein FUNCTION: TIR-NB-LRR receptor-like protein involved in plant defense. Acts as a trigger of hypersensitive response (HR). Functions as guard of CAMTA3, a negative regulator of immunity, during pathogen infection. {ECO:0000269|PubMed:28407487}. 47658,138735,142967,147512,138416,100279,92865,97214,95626,139902,36395,120615,32167,93051,147356 Leucine-rich repeat (LRR) family protein (Uncharacterized protein AT4g19470) (Uncharacterized protein F24J7.30),Disease resistance protein (TIR-NBS-LRR class),Disease resistance protein (TIR-NBS-LRR class) (Disease resistance protein-like),Disease resistance protein (TIR-NBS-LRR class) family (Putative disease resistance protein (TMV N-like)),Toll-Interleukin-Resistance (TIR) domain family protein ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; signal transduction [GO:0007165],signal transduction [GO:0007165] locus:2122925;,locus:2122965;,locus:2118106;,locus:1006230302;,locus:2153338;,locus:2175991; AT4G19470,AT4G19510,AT4G12010,AT4G23515,AT5G45240,AT5G17680 resistance protein NA NA NA NA NA NA NA ENOG411E2J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter NA NA NA NA NA NA NA ENOG411E2J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised conserved protein NA NA NA NA NA NA NA ENOG411EKQP Q8GYI4,F4IQ76,F4IQ75,F4IQ73 Q8GYI4_ARATH,F4IQ76_ARATH,F4IQ75_ARATH,F4IQ73_ARATH Phosphoenolpyruvate carboxylase family protein (Putative carboxyphosphonoenolpyruvate mutase),Phosphoenolpyruvate carboxylase family protein ARA:AT2G43180-MONOMER; 51986,51079,49056,51857 Phosphoenolpyruvate carboxylase family protein (Putative carboxyphosphonoenolpyruvate mutase),Phosphoenolpyruvate carboxylase family protein chloroplast [GO:0009507]; catalytic activity [GO:0003824],catalytic activity [GO:0003824] locus:2041006; AT2G43180 Isocitrate lyase family OSJNBb0116K07.9 protein (Os04g0504600 protein),OSJNBa0044M19.9 protein (Os04g0386600 protein) (cDNA clone:001-045-D08, full insert sequence) (cDNA clone:J013098I05, full insert sequence) Q7F8Y3,Q7XLP7 Q7F8Y3_ORYSJ,Q7XLP7_ORYSJ Os04g0504600 OsJ_15375 OSJNBb0116K07.9 OSNPB_040504600,Os04g0386600 OsJ_14560 OSJNBa0044M19.9 OSNPB_040386600 ENOG411EKQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0898300 protein (Fragment) A0A0P0VBN1 A0A0P0VBN1_ORYSJ Os01g0898300 OSNPB_010898300 ENOG411EKQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase I-specific transcription initiation factor Rrn7 NA NA NA NA NA NA NA ENOG411EKQN O49290,Q501F7 CPPM_ARATH,Q501F7_ARATH Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate phosphonomutase) (CPEP phosphonomutase),At1g21440 (Phosphoenolpyruvate carboxylase family protein) (Uncharacterized protein At1g21440) ARA:AT1G77060-MONOMER;,ARA:AT1G21440-MONOMER; 2.7.8.23 36566,36307 Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate phosphonomutase) (CPEP phosphonomutase),At1g21440 (Phosphoenolpyruvate carboxylase family protein) (Uncharacterized protein At1g21440) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; carboxyvinyl-carboxyphosphonate phosphorylmutase activity [GO:0008807]; metabolic process [GO:0008152],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; catalytic activity [GO:0003824]; metabolic process [GO:0008152] locus:2025272;,locus:2027022; AT1G77060,AT1G21440 carboxyvinyl-carboxyphosphonate phosphorylmutase Os12g0189300 protein Q0IPL3 Q0IPL3_ORYSJ Os12g0189300 Os12g0189300 OSNPB_120189300 ENOG411E40E Q52K99,A0A1P8AXB7 Q52K99_ARATH,A0A1P8AXB7_ARATH Acyl-CoA-binding domain protein (At2g37195),Acyl-CoA-binding domain protein 15062,16160 Acyl-CoA-binding domain protein (At2g37195),Acyl-CoA-binding domain protein integral component of membrane [GO:0016021] locus:504955939; AT2G37195 NA Os02g0805700 protein Q6K839 Q6K839_ORYSJ Os02g0805700 OJ1111_C07.2 OJ1548_F12.24 OsJ_08783 OSNPB_020805700 ENOG411E40H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0955600 protein (Fragment) A0A0P0VD11 A0A0P0VD11_ORYSJ Os01g0955600 OSNPB_010955600 ENOG411EA1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GAT domain NA NA NA NA NA NA NA ENOG411E405 DOGL1 Q9SN47 DOGL1_ARATH Protein DOG1-like 1 DISRUPTION PHENOTYPE: No germination phenotype. {ECO:0000269|PubMed:17065317}. 31417 Protein DOG1-like 1 sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351] locus:2124132; AT4G18660 Inherit from euNOG: delay of germination 1 NA NA NA NA NA NA NA ENOG411E409 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0776600 protein C7IZ49 C7IZ49_ORYSJ Os02g0776600 Os02g0776600 OSNPB_020776600 ENOG411E9AU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9AT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411E9AW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9AV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40S ribosomal protein S12 40S ribosomal protein S12 Q8H2J8,Q6ZLP8 Q8H2J8_ORYSJ,Q6ZLP8_ORYSJ OSJNBa0016A21.128-2 Os07g0229900 OsJ_23611 OSNPB_070229900,Os07g0150200 OJ1027_G06.23 OsJ_23105 OSNPB_070150200 ENOG411E9AQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root hair defective 3 GTP-binding protein (RHD3) NA NA NA NA NA NA NA ENOG411E9AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9AS COL8,BBX17 Q9M9B3,F4I1N0 COL8_ARATH,F4I1N0_ARATH Zinc finger protein CONSTANS-LIKE 8,B-box type zinc finger protein with CCT domain-containing protein 37501,38317 Zinc finger protein CONSTANS-LIKE 8,B-box type zinc finger protein with CCT domain-containing protein nucleus [GO:0005634]; zinc ion binding [GO:0008270],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2028421; AT1G49130 B-box zinc finger NA NA NA NA NA NA NA ENOG411E9AR Q9FKD5,Q9FKD6,Q9FKD7,Q9FKD9 SINL9_ARATH,SINL8_ARATH,SINL7_ARATH,SINL6_ARATH Putative E3 ubiquitin-protein ligase SINA-like 9 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 9) (Seven in absentia-like protein 9),E3 ubiquitin-protein ligase SINA-like 8 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 8) (Seven in absentia-like protein 8),E3 ubiquitin-protein ligase SINA-like 7 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 7) (Seven in absentia-like protein 7),Putative E3 ubiquitin-protein ligase SINA-like 6 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 6) (Seven in absentia-like protein 6) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-5689880;R-ATH-983168; 2.3.2.27 30852,29804,32052,31313 Putative E3 ubiquitin-protein ligase SINA-like 9 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 9) (Seven in absentia-like protein 9),E3 ubiquitin-protein ligase SINA-like 8 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 8) (Seven in absentia-like protein 8),E3 ubiquitin-protein ligase SINA-like 7 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 7) (Seven in absentia-like protein 7),Putative E3 ubiquitin-protein ligase SINA-like 6 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 6) (Seven in absentia-like protein 6) nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511],nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; response to UV [GO:0009411]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2153774;,locus:2153754;,locus:2153804; AT5G37910,AT5G37900,AT5G37890,AT5G37870 Seven in absentia protein family NA NA NA NA NA NA NA ENOG411E9AY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411E9AX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9AZ KIN4B,KICP-02 Q94LW7,A0A178VII2,A0A1I9LPH6,A0A1I9LPH5 KN4B_ARATH,A0A178VII2_ARATH,A0A1I9LPH6_ARATH,A0A1I9LPH5_ARATH Kinesin-like protein KIN-4B (AtKINESIN-4B),Kinesin-like protein,ATP binding microtubule motor family protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:25600279}. FUNCTION: Kinesin-like motor protein involved in the control of the oriented deposition of cellulose microfibrils. {ECO:0000250|UniProtKB:Q8GS71}. ARA:GQT-1120-MONOMER; R-ATH-6811434;R-ATH-983189; 118762,108155,105777,118318 Kinesin-like protein KIN-4B (AtKINESIN-4B),Kinesin-like protein,ATP binding microtubule motor family protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; cell wall organization [GO:0071555]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2074855; AT3G50240 KISc NA NA NA NA NA NA NA ENOG411E9AE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E9AD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9AG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9AF MAN1 Q9FZ29,A0A1P8AQX8 MAN1_ARATH,A0A1P8AQX8_ARATH Mannan endo-1,4-beta-mannosidase 1 (EC 3.2.1.78) (Beta-mannanase 1) (Endo-beta-1,4-mannanase 1) (AtMAN1),Glycosyl hydrolase superfamily protein ARA:AT1G02310-MONOMER; 3.2.1.78 46290,48501 Mannan endo-1,4-beta-mannosidase 1 (EC 3.2.1.78) (Beta-mannanase 1) (Endo-beta-1,4-mannanase 1) (AtMAN1),Glycosyl hydrolase superfamily protein extracellular region [GO:0005576]; mannan endo-1,4-beta-mannosidase activity [GO:0016985]; mannan catabolic process [GO:0046355],integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:16897088}. locus:2204878; AT1G02310 Cellulase (glycosyl hydrolase family 5) NA NA NA NA NA NA NA ENOG411E9AA ''cytochrome P450,CYP96A12 Q9LYZ5,Q9SVA7 Q9LYZ5_ARATH,Q9SVA7_ARATH Cytochrome P450, family 96, subfamily A, polypeptide 13 (Cytochrome P450-like protein),At4g39510/F23K16_140 (Cytochrome P450, family 96, subfamily A, polypeptide 12) (Cytochrome P450-like protein) ARA:GQT-421-MONOMER;,ARA:GQT-1500-MONOMER; 54760,58422 Cytochrome P450, family 96, subfamily A, polypeptide 13 (Cytochrome P450-like protein),At4g39510/F23K16_140 (Cytochrome P450, family 96, subfamily A, polypeptide 12) (Cytochrome P450-like protein) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2151216;,locus:2122521; AT5G02900,AT4G39510 Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9AC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BURP domain NA NA NA NA NA NA NA ENOG411E9AB PUB54 Q9LQ92 PUB54_ARATH U-box domain-containing protein 54 (EC 2.3.2.27) (Plant U-box protein 54) (RING-type E3 ubiquitin transferase PUB54) FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.B10;6.3.2.19; 2.3.2.27 35392 U-box domain-containing protein 54 (EC 2.3.2.27) (Plant U-box protein 54) (RING-type E3 ubiquitin transferase PUB54) ubiquitin-protein transferase activity [GO:0004842]; response to stress [GO:0006950] locus:2198190; AT1G01680 Ubox NA NA NA NA NA NA NA ENOG411E9AM Q9ZU24,F4IB88 Q9ZU24_ARATH,F4IB88_ARATH F5F19.5 protein (O-methyltransferase family protein),O-methyltransferase family protein ARA:AT1G51990-MONOMER; R-ATH-209931; 40409,40457 F5F19.5 protein (O-methyltransferase family protein),O-methyltransferase family protein O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983],O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438] locus:2034016; AT1G51990 Dimerisation domain NA NA NA NA NA NA NA ENOG411E9AN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411E9AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411E9AH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411E9AK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HLH Os01g0230200 protein (cDNA clone:J013037L22, full insert sequence) Q5NB28 Q5NB28_ORYSJ Os01g0230200 OSNPB_010230200 P0431F01.5 P0485D09.22 ENOG411E9AJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THN NA NA NA NA NA NA NA ENOG411EA14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Polysaccharide biosynthesis protein NA NA NA NA NA NA NA ENOG411E9A5 IGPS P49572 TRPC_ARATH Indole-3-glycerol phosphate synthase, chloroplastic (IGPS) (EC 4.1.1.48) FUNCTION: Indole-3-glycerol phosphate synthase required for tryptophan biosynthesis. {ECO:0000269|PubMed:7610197}. PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 4/5. ARA:AT2G04400-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 4.1.1.48 44577 Indole-3-glycerol phosphate synthase, chloroplastic (IGPS) (EC 4.1.1.48) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; copper ion binding [GO:0005507]; indole-3-glycerol-phosphate synthase activity [GO:0004425]; tryptophan biosynthetic process [GO:0000162] TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:7610197}. locus:2058294; AT2G04400 Indole-3-glycerol phosphate synthase NA NA NA NA NA NA NA ENOG411E9A4 NPF5.15 Q9SK99,A0A1P8AN07 PTR11_ARATH,A0A1P8AN07_ARATH Protein NRT1/ PTR FAMILY 5.15 (AtNPF5.15),Major facilitator superfamily protein R-ATH-427975;R-ATH-6798695; 62938,58834 Protein NRT1/ PTR FAMILY 5.15 (AtNPF5.15),Major facilitator superfamily protein integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in shoots, roots and leaves. {ECO:0000269|PubMed:17481610}. locus:2009542; AT1G22570 POT family NA NA NA NA NA NA NA ENOG411E9A7 TCP17 Q9LEZ9 TCP17_ARATH Transcription factor TCP17 Homozygotes have a WT phenotype FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. 27412 Transcription factor TCP17 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; leaf morphogenesis [GO:0009965]; positive regulation of development, heterochronic [GO:0045962]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}. locus:2181479; AT5G08070 TCP family transcription factor NA NA NA NA NA NA NA ENOG411E9A6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9A1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0190900 protein,Os10g0460800 protein Q69TK1,A0A0P0XUX2 Q69TK1_ORYSJ,A0A0P0XUX2_ORYSJ OSJNBa0090D06.33 Os06g0190900 OSNPB_060190900,Os10g0460800 OSNPB_100460800 ENOG411E9A0 F7P12.16,F12E4_90,M3E9.190,MSK20.1 Q9LTL6,Q9LNK8,Q9LZF4,Q84R08,Q9C705,O65596,A0A1P8AMP1,F4IIQ1,F4HZX5,F4K5X1 Q9LTL6_ARATH,Q9LNK8_ARATH,Q9LZF4_ARATH,Q84R08_ARATH,Q9C705_ARATH,O65596_ARATH,A0A1P8AMP1_ARATH,F4IIQ1_ARATH,F4HZX5_ARATH,F4K5X1_ARATH Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (F12K21.20),Cysteine/histidine-rich C1 domain protein (Uncharacterized protein At5g03360) (Uncharacterized protein F12E4_90),Putative CHP-rich zinc finger protein (Uncharacterized protein At3g21210) (Zinc ion binding protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F28G11.17),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g26380) (Uncharacterized protein M3E9.190) 55948,70975,79746,91876,80459,115552,83219,82905,51105,78231 Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (F12K21.20),Cysteine/histidine-rich C1 domain protein (Uncharacterized protein At5g03360) (Uncharacterized protein F12E4_90),Putative CHP-rich zinc finger protein (Uncharacterized protein At3g21210) (Zinc ion binding protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein F28G11.17),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein AT4g26380) (Uncharacterized protein M3E9.190) intracellular [GO:0005622]; zinc ion binding [GO:0008270],metal ion binding [GO:0046872]; response to stress [GO:0006950],metal ion binding [GO:0046872] locus:2093496;,locus:2009313;,locus:2094751;,locus:2028937;,locus:2131438;,locus:2056618;,locus:2030032;,locus:2173502; AT3G26250,AT1G34480,AT5G03360,AT3G21210,AT1G66450,AT4G26380,AT2G28460,AT1G29180,AT5G37210 C1 domain NA NA NA NA NA NA NA ENOG411E9A3 GDPD3 Q680A6,A0A1P8BB76 GDPD3_ARATH,A0A1P8BB76_ARATH Glycerophosphodiester phosphodiesterase GDPD3 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 3) (ATGDPD3),PLC-like phosphodiesterases superfamily protein ARA:GQT-1833-MONOMER; 3.1.4.46 42293,33479 Glycerophosphodiester phosphodiesterase GDPD3 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 3) (ATGDPD3),PLC-like phosphodiesterases superfamily protein cell [GO:0005623]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; cellular phosphate ion homeostasis [GO:0030643]; glycerol metabolic process [GO:0006071]; glycerophospholipid catabolic process [GO:0046475],phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:21323773}. locus:2169278; AT5G43300 Glycerophosphodiester phosphodiesterase NA NA NA NA NA NA NA ENOG411E9A2 F4J0E6 F4J0E6_ARATH Transmembrane protein, putative (DUF1216) 61330 Transmembrane protein, putative (DUF1216) integral component of membrane [GO:0016021]; pollen exine formation [GO:0010584] locus:2098383; AT3G28780 Protein of unknown function (DUF1216) NA NA NA NA NA NA NA ENOG411E9A9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0661800 protein) (cDNA clone:J023024H16, full insert sequence),Expressed protein (Os03g0663100 protein) Q75GW4,Q75GX1 Q75GW4_ORYSJ,Q75GX1_ORYSJ Os03g0661800 LOC_Os03g45970 Os03g0661800 OSJNBa0034D21.25 OSNPB_030661800,Os03g0663100 LOC_Os03g46040 Os03g0663100 OsJ_11986 OSJNBa0034D21.18 OSNPB_030663100 ENOG411E9A8 Q9SID9,A0A1P8AYM0 Q9SID9_ARATH,A0A1P8AYM0_ARATH Expressed protein (Hematological/neurological-like protein),Hematological/neurological-like protein 36430,31978 Expressed protein (Hematological/neurological-like protein),Hematological/neurological-like protein locus:2060425; AT2G22270 NA NA NA NA NA NA NA NA ENOG411EA10 NPY5 Q0WL52 NPY5_ARATH BTB/POZ domain-containing protein NPY5 (Protein NAKED PINS IN YUC MUTANTS 5) FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses. {ECO:0000250, ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. PATHWAY: Protein modification; protein ubiquitination. 64571 BTB/POZ domain-containing protein NPY5 (Protein NAKED PINS IN YUC MUTANTS 5) cell periphery [GO:0071944]; flower development [GO:0009908]; positive gravitropism [GO:0009958]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in the cotyledon cells that would differentiate into vascular bundles. Also detected in the apical meristem and young flowers. Highly expressed in primary root tips. {ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. locus:2120125; AT4G37590 naked pins in yuc mutants 5 NA NA NA NA NA NA NA ENOG411E0GQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxylesterase family Os06g0214800 protein (Putative PrMC3) (cDNA clone:006-204-G08, full insert sequence) (cDNA clone:006-303-C01, full insert sequence) (cDNA clone:J023047F19, full insert sequence) Q69Y18 Q69Y18_ORYSJ Os06g0214800 Os06g0214800 OSNPB_060214800 P0537F07.15 P0701E03.54 ENOG411E0GG AAE6,AAE8,AAE5 Q9FFE9,Q9LQS1,Q9FFE6 AAE6_ARATH,AAE8_ARATH,AAE5_ARATH Probable acyl-activating enzyme 6 (EC 6.2.1.-) (AMP-binding protein 6) (AtAMPBP6),Probable acyl-activating enzyme 8 (EC 6.2.1.-) (AMP-binding protein 8) (AtAMPBP8),Probable acyl-activating enzyme 5, peroxisomal (EC 6.2.1.-) (AMP-binding protein 5) (AtAMPBP5) FUNCTION: May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. {ECO:0000250}. ARA:AT5G16340-MONOMER;,ARA:AT1G75960-MONOMER;,ARA:AT5G16370-MONOMER; 6.2.1.- 60132,59711,60770 Probable acyl-activating enzyme 6 (EC 6.2.1.-) (AMP-binding protein 6) (AtAMPBP6),Probable acyl-activating enzyme 8 (EC 6.2.1.-) (AMP-binding protein 8) (AtAMPBP8),Probable acyl-activating enzyme 5, peroxisomal (EC 6.2.1.-) (AMP-binding protein 5) (AtAMPBP5) ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631],peroxisome [GO:0005777]; ligase activity [GO:0016874]; fatty acid metabolic process [GO:0006631] TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, stems and developing seeds. {ECO:0000269|PubMed:12805634}.,TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, stems, flowers and developing seeds. {ECO:0000269|PubMed:12805634}.,TISSUE SPECIFICITY: Expressed in roots, stems and developing seeds. {ECO:0000269|PubMed:12805634}. locus:2171357;,locus:2204360;,locus:2171402; AT5G16340,AT1G75960,AT5G16370 acyl coa ligase acetate-coa synthetase-like protein OSJNBa0018M05.15 protein (Os04g0674700 protein) (cDNA clone:002-112-H10, full insert sequence) Q7XQ93 Q7XQ93_ORYSJ Os04g0674700 OSJNBa0018M05.15 OSNPB_040674700 ENOG411E0GD AGT3,PYD4 Q94AL9,Q9SR86,F4ISY3,A0A1I9LPN6 AGT22_ARATH,AGT23_ARATH,F4ISY3_ARATH,A0A1I9LPN6_ARATH Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 2),Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 3),Alanine:glyoxylate aminotransferase 3,PYRIMIDINE 4 ARA:AT2G38400-MONOMER;,ARA:AT3G08860-MONOMER; R-ATH-389661; 2.6.1.44 51912,52461,53693,50897 Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 2),Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 3),Alanine:glyoxylate aminotransferase 3,PYRIMIDINE 4 mitochondrion [GO:0005739]; alanine-glyoxylate transaminase activity [GO:0008453]; identical protein binding [GO:0042802]; pyridoxal phosphate binding [GO:0030170]; photorespiration [GO:0009853],mitochondrion [GO:0005739]; alanine-glyoxylate transaminase activity [GO:0008453]; identical protein binding [GO:0042802]; pyridoxal phosphate binding [GO:0030170]; cellular response to nitrogen levels [GO:0043562]; photorespiration [GO:0009853],pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483] locus:2097623;,locus:2057150; AT2G38400,AT3G08860 Aminotransferase Os05g0475400 protein (Putative aminotransferase) Q65WV6 Q65WV6_ORYSJ Os05g0475400 OSNPB_050475400 P0486C01.19 ENOG411E0GB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYB transcription factor-like protein (Os01g0852500 protein) (cDNA clone:J023026J02, full insert sequence) Q5N9B3 Q5N9B3_ORYSJ Os01g0852500 Os01g0852500 OsJ_04101 OSNPB_010852500 P0529E05.12 ENOG411E0GM MSL2,MSL3 Q56X46,Q8L7W1 MSL2_ARATH,MSL3_ARATH Mechanosensitive ion channel protein 2, chloroplastic (Mechanosensitive channel of small conductance-like 2) (MscS-Like protein 2),Mechanosensitive ion channel protein 3, chloroplastic (Mechanosensitive channel of small conductance-like 3) (MscS-Like protein 3) DISRUPTION PHENOTYPE: Msl2 and msl3 double mutant shows abnormalities in the size and shape of plastids with enlarged chloroplasts containing multiple FtsZ rings. {ECO:0000269|PubMed:16401419, ECO:0000269|PubMed:21810996}. no observable phenotype FUNCTION: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer (By similarity). Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery. {ECO:0000250, ECO:0000269|PubMed:16401419, ECO:0000269|PubMed:21810996}.,FUNCTION: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery. {ECO:0000269|PubMed:16401419, ECO:0000269|PubMed:21810996}. 74429,74189 Mechanosensitive ion channel protein 2, chloroplastic (Mechanosensitive channel of small conductance-like 2) (MscS-Like protein 2),Mechanosensitive ion channel protein 3, chloroplastic (Mechanosensitive channel of small conductance-like 3) (MscS-Like protein 3) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid envelope [GO:0009526]; chloroplast fission [GO:0010020]; ion transport [GO:0006811]; transmembrane transport [GO:0055085],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid envelope [GO:0009526]; chloroplast fission [GO:0010020]; ion transport [GO:0006811]; transmembrane transport [GO:0055085] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16401419}. locus:2142414;,locus:2015297; AT5G10490,AT1G58200 ion channel NA NA NA NA NA NA NA ENOG411E0G0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine protein phosphatase 2A 57 kDa regulatory subunit B' Serine/threonine protein phosphatase 2A regulatory subunit Q7XJ10 Q7XJ10_ORYSJ Os09g0542700 B1274F11.50 OSNPB_090542700 P0478E02.17 FUNCTION: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000256|PIRNR:PIRNR028043}. ENOG411E0G1 F21O3.15,MJE7.17 Q9SRS2,F4K1Q9 Q9SRS2_ARATH,F4K1Q9_ARATH F21O3.15 protein (Uncharacterized protein At3g07440),Uncharacterized protein 28545,23775 F21O3.15 protein (Uncharacterized protein At3g07440),Uncharacterized protein locus:2079671;,locus:2166081; AT3G07440,AT5G48530 NA Os02g0478500 protein (Fragment) A0A0P0VJ04 A0A0P0VJ04_ORYSJ Os02g0478500 OSNPB_020478500 ENOG411E0G8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant phosphoribosyltransferase C-terminal Os07g0483500 protein (Putative anthranilate phosphoribosyltransferase) (cDNA clone:J013095C11, full insert sequence) (cDNA clone:J033114M07, full insert sequence) Q8H2Q5 Q8H2Q5_ORYSJ OJ1136_F08.109 P0045A07.133 Os07g0483500 OsJ_24259 OSNPB_070483500 ENOG411EBQ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FR47-like protein NA NA NA NA NA NA NA ENOG411EBQ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EICJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0317400 protein (Putative glycine rich protein) (cDNA, clone: J065155L01, full insert sequence),Os06g0317600 protein (Putative glycine rich protein) Q5Z4P5,Q5ZAB3 Q5Z4P5_ORYSJ,Q5ZAB3_ORYSJ Os06g0317400 B1156C07.47 OSNPB_060317400 P0468A12.17,Os06g0317600 Os06g0317600 OsJ_21139 OSNPB_060317600 P0468A12.19 ENOG411EDVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EDVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBQQ MVP7.11 Q9FGF5 Q9FGF5_ARATH Holocarboxylase synthetase (Uncharacterized protein At5g64780) 19991 Holocarboxylase synthetase (Uncharacterized protein At5g64780) locus:2176070; AT5G64780 NA NA NA NA NA NA NA NA ENOG411EDVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411EDVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA impB/mucB/samB family C-terminal domain NA NA NA NA NA NA NA ENOG411EDVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2974) NA NA NA NA NA NA NA ENOG411EBQB TBL45 O80872,A0A1P8AZP4 TBL45_ARATH,A0A1P8AZP4_ARATH Protein trichome birefringence-like 45,TRICHOME BIREFRINGENCE-LIKE 45 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 45477,50330 Protein trichome birefringence-like 45,TRICHOME BIREFRINGENCE-LIKE 45 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],integral component of membrane [GO:0016021] locus:2045688; AT2G30010 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411EDVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WGS project CAID00000000 data contig chromosome 09 NA NA NA NA NA NA NA ENOG411E63K O82275 O82275_ARATH At2g31090 (Expressed protein) (Transmembrane protein) (mRNA, clone: RAFL21-78-F02) 8150 At2g31090 (Expressed protein) (Transmembrane protein) (mRNA, clone: RAFL21-78-F02) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; fruit morphogenesis [GO:0048530]; organ boundary specification between lateral organs and the meristem [GO:0010199] locus:2055892; AT2G31090 NA Os01g0214500 protein (cDNA clone:001-103-G08, full insert sequence),Os05g0209500 protein (cDNA clone:001-106-H08, full insert sequence) Q5QNJ2,Q75IK5 Q5QNJ2_ORYSJ,Q75IK5_ORYSJ Os01g0214500 OsJ_00867 OsJ_00871 OSJNBa0038J17.30 OSNPB_010214500 P0515G01.8,Os05g0209500 Os05g0209500 OsJ_17523 OSJNBb0016G07.7 OSNPB_050209500 ENOG411E63A RPA3B,RPA3A Q6NLG7,Q9LXK1 RFA3B_ARATH,RFA3A_ARATH Replication protein A 14 kDa subunit B (AtRPA14B) (Replication factor A protein 3B) (Replication protein A 3B),Replication protein A 14 kDa subunit A (AtRPA14A) (Replication factor A protein 3A) (Replication protein A 3A) FUNCTION: As part of the replication protein A (RPA/RP-A), a single-stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism (By similarity). {ECO:0000250}. 11716,11653 Replication protein A 14 kDa subunit B (AtRPA14B) (Replication factor A protein 3B) (Replication protein A 3B),Replication protein A 14 kDa subunit A (AtRPA14A) (Replication factor A protein 3A) (Replication protein A 3A) nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260] locus:2124583;,locus:2083198; AT4G18590,AT3G52630 DNA recombination Replication protein A 14 kDa subunit (OsRPA14) (Replication factor A protein 3) (Replication protein A 3) Q9SDK9 RFA3_ORYSJ RPA3 RPA14 Os01g0253600 LOC_Os01g14980 OsJ_01130 P0705D01.4 FUNCTION: As part of the replication protein A (RPA/RP-A), a single-stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. {ECO:0000250|UniProtKB:P35244}. ENOG411E63G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0532800 protein Q6ESE7 Q6ESE7_ORYSJ Os02g0532800 OSNPB_020532800 P0605D08.30 ENOG411E63S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBP domain NA NA NA NA NA NA NA ENOG411DSHF NLP6,NLP9,NLP8,NIN-like protein 8,NIN-like protein 6 Q8RWY4,Q9M1B0,O22864,A0A1P8B2R8,A0A1P8B2Q9,A0A1P8AWY3 NLP6_ARATH,NLP9_ARATH,NLP8_ARATH,A0A1P8B2R8_ARATH,A0A1P8B2Q9_ARATH,A0A1P8AWY3_ARATH Protein NLP6 (AtNLP6) (NIN-like protein 6) (Nodule inception protein-like protein 6),Protein NLP9 (AtNLP9) (NIN-like protein 9) (Nodule inception protein-like protein 8),Protein NLP8 (AtNLP8) (NIN-like protein 8) (Nodule inception protein-like protein 8),Plant regulator RWP-RK family protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18826430}. FUNCTION: Probable transcription factor. {ECO:0000250}. 93863,98713,104884,104656,103285,76903 Protein NLP6 (AtNLP6) (NIN-like protein 6) (Nodule inception protein-like protein 6),Protein NLP9 (AtNLP9) (NIN-like protein 9) (Nodule inception protein-like protein 8),Protein NLP8 (AtNLP8) (NIN-like protein 8) (Nodule inception protein-like protein 8),Plant regulator RWP-RK family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2019424;,locus:2097588;,locus:2058244; AT1G64530,AT3G59580,AT2G43500 RWP-RK domain-containing protein Protein NLP2 (OsNLP2) (NIN-like protein 2) (Nodule inception protein-like protein 2),Os11g0264300 protein,Os04g0495800 protein (Fragment) Q0JC27,A0A0P0Y198,A0A0P0WC00,A0A0P0Y1F4 NLP2_ORYSJ,A0A0P0Y198_ORYSJ,A0A0P0WC00_ORYSJ,A0A0P0Y1F4_ORYSJ NLP2 Os04g0495800 LOC_Os04g41850 J033120P08 OsJ_15319 OSJNBa0067K08.5,Os11g0264300 OSNPB_110264300,Os04g0495800 OSNPB_040495800 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411EK5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: helicase NA NA NA NA NA NA NA ENOG411DTHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411E7A2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0442000 protein,Os01g0863500 protein C7J270,Q94CV6 C7J270_ORYSJ,Q94CV6_ORYSJ Os05g0442000 Os05g0442000 OSNPB_050442000,Os01g0863500 OsJ_04168 OSNPB_010863500 P0423B08.22 ENOG411E7AZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromosome segregation protein Spc25 NA NA NA NA NA NA NA ENOG411E7AX T25B15_130 Q9FT46 Q9FT46_ARATH Transmembrane protein (Uncharacterized protein At3g52360) (Uncharacterized protein T25B15_130) 9811 Transmembrane protein (Uncharacterized protein At3g52360) (Uncharacterized protein T25B15_130) integral component of membrane [GO:0016021]; response to karrikin [GO:0080167] locus:2100559; AT3G52360 NA NA NA NA NA NA NA NA ENOG411E7AQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0632400 protein B9FQ17 B9FQ17_ORYSJ Os06g0632400 OsJ_22058 OSNPB_060632400 ENOG411E7AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7AK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GPR1/FUN34/yaaH family NA NA NA NA NA NA NA ENOG411E7AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7AA S1FA1,S1FA2 P42551,Q42337,F4J9D1 S1FA1_ARATH,S1FA2_ARATH,F4J9D1_ARATH DNA-binding protein S1FA1,DNA-binding protein S1FA2,S1FA-like DNA-binding protein FUNCTION: DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. 8213,8221,4259 DNA-binding protein S1FA1,DNA-binding protein S1FA2,S1FA-like DNA-binding protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] locus:2083971;,locus:2061805; AT3G53370,AT2G37120 DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter (By similarity) DNA-binding protein S1FA1,DNA-binding protein S1FA2,Os04g0408900 protein (Fragment) P42553,Q7XLX6,A0A0P0W9W8 S1FA1_ORYSJ,S1FA2_ORYSJ,A0A0P0W9W8_ORYSJ S1FA1 S1FA Os04g0408900 LOC_Os04g33420 OsJ_14705 OSJNBa0042I15.18,S1FA2 Os04g0408700 LOC_Os04g33440 OsJ_14704 OSJNBa0042I15.16,Os04g0408900 OSNPB_040408900 FUNCTION: DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. ENOG411EK5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Succinate dehydrogenase/Fumarate reductase transmembrane subunit NA NA NA NA NA NA NA ENOG411EK5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF618 Os09g0566100 protein,Os09g0566100 protein (Fragment) Q0IZJ8,A0A0P0XQI0 Q0IZJ8_ORYSJ,A0A0P0XQI0_ORYSJ Os09g0566100 Os09g0566100 OSNPB_090566100,Os09g0566100 OSNPB_090566100 ENOG411DSB7 FAR1 Q9SWG3 FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 DISRUPTION PHENOTYPE: Elongated hypocotyls and reduced expansion of cotyledons under continuous far-red light. Reduced protochlorophyllide levels in darkness and less photobleaching in the light. {ECO:0000269|PubMed:10444599, ECO:0000269|PubMed:22634759}. Altered response to far-red light-P. Quail-1999 FUNCTION: Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. 95449 Protein FAR-RED IMPAIRED RESPONSE 1 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red or far-red light signaling pathway [GO:0010017]; red, far-red light phototransduction [GO:0009585]; response to far red light [GO:0010218]; response to red or far red light [GO:0009639] locus:2129665; AT4G15090 Protein FAR-RED IMPAIRED RESPONSE Os07g0141500 protein,Os11g0681300 protein (Fragment) Q0D8P5,A0A0P0Y5B4 Q0D8P5_ORYSJ,A0A0P0Y5B4_ORYSJ Os07g0141500 Os07g0141500 OSNPB_070141500,Os11g0681300 OSNPB_110681300 ENOG411EK5P IQM6 Q9M2G8 IQM6_ARATH IQ domain-containing protein IQM6 (IQ motif-containing protein 6) FUNCTION: May be involved in biotic and abiotic stress responses. {ECO:0000250|UniProtKB:O82645}. 66368 IQ domain-containing protein IQM6 (IQ motif-containing protein 6) cytoplasm [GO:0005737]; nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, stems, flowers and siliques, and at lower levels in cauline leaves. {ECO:0000269|Ref.3}. locus:2076421; AT3G58480 Inherit from NOG: Calmodulin-binding NA NA NA NA NA NA NA ENOG411EFXY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EFXX PUX12 Q9LUG7 PUX12_ARATH Plant UBX domain-containing protein 12 (PUX12) 17593 Plant UBX domain-containing protein 12 (PUX12) locus:505006365; AT3G23605 UBX domain-containing protein NA NA NA NA NA NA NA ENOG411EFXZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 NA NA NA NA NA NA NA ENOG411EFXP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFXS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C1-like domain Os07g0609800 protein,Os07g0609700 protein,Os07g0610600 protein Q6YTW5,Q6YTW7,A0A0P0X915 Q6YTW5_ORYSJ,Q6YTW7_ORYSJ,A0A0P0X915_ORYSJ Os07g0609800 OsJ_25085 OSJNBb0018L13.29 OSNPB_070609800,Os07g0609700 OsJ_25083 OSJNBb0018L13.26 OSNPB_070609700,Os07g0610600 OSNPB_070610600 ENOG411EFXR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family NA NA NA NA NA NA NA ENOG411EFXU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EFXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 NA NA NA NA NA NA NA ENOG411EFXW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyt-b5 NA NA NA NA NA NA NA ENOG411EFXV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Polyadenylate-binding protein NA NA NA NA NA NA NA ENOG411EFXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFXH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seven in absentia protein family E3 ubiquitin-protein ligase (EC 2.3.2.27) Q9AWV2 Q9AWV2_ORYSJ P0044F08.8 Os01g0125000 OSNPB_010125000 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411EFXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of Unknown Function (DUF1042) NA NA NA NA NA NA NA ENOG411EFXJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFXM Q8LBJ0 Q8LBJ0_ARATH At5g03440 (Zinc finger protein) 11149 At5g03440 (Zinc finger protein) locus:2142689; AT5G03440 Inherit from NOG: expressed protein NA NA NA NA NA NA NA ENOG411EFXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated domain Os07g0196900 protein (Fragment) A0A0P0X3K3 A0A0P0X3K3_ORYSJ Os07g0196900 OSNPB_070196900 ENOG411EFXC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFXB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EFXE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Component of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins NA NA NA NA NA NA NA ENOG411EFXG Q9LIS0,F4J5A2 Q9LIS0_ARATH,F4J5A2_ARATH GTP-binding protein-like protein 28068,26528 GTP-binding protein-like protein nucleolus [GO:0005730] locus:2076176; AT3G23860 Inherit from KOG: Involved in the biogenesis of the 60S ribosomal subunit (By similarity) NA NA NA NA NA NA NA ENOG411EFXF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFX9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFX3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0228000 protein Q8H2L2 Q8H2L2_ORYSJ OSJNBa0016A21.108 Os07g0228000 OSNPB_070228000 ENOG411EFX2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0585200 protein (Os07g0585250 protein),Os06g0682750 protein,Os02g0724700 protein C7J588,A0A0P0X0K4,A0A0P0VPD1 C7J588_ORYSJ,A0A0P0X0K4_ORYSJ,A0A0P0VPD1_ORYSJ Os07g0585200 Os07g0585250 OSNPB_070585200,Os06g0682750 OSNPB_060682750,Os02g0724700 OSNPB_020724700 ENOG411EFX5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0634400 protein (Fragment) A0A0P0YD12 A0A0P0YD12_ORYSJ Os12g0634400 OSNPB_120634400 ENOG411EFX4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411EFX7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411EMRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calmodulin-binding transcription activator NA NA NA NA NA NA NA ENOG411EKK5 ABCI10 Q8H1R4 AB10I_ARATH ABC transporter I family member 10, chloroplastic (ABC transporter ABCI.10) (AtABCI10) (Non-intrinsic ABC protein 13) (Protein EMBRYO DEFECTIVE 2751) Embryo defective; Cotyledon-D. Meinke-2003 ARA:GQT-239-MONOMER; 29624 ABC transporter I family member 10, chloroplastic (ABC transporter ABCI.10) (AtABCI10) (Non-intrinsic ABC protein 13) (Protein EMBRYO DEFECTIVE 2751) chloroplast envelope [GO:0009941]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] locus:2119186; AT4G33460 ABC transporter I family member 10 Os01g0770500 protein (Putative cobalt transport ATP-binding protein cbiO) (cDNA clone:J013047J06, full insert sequence) (cDNA clone:J023102M23, full insert sequence) Q5ZD09 Q5ZD09_ORYSJ Os01g0770500 OSNPB_010770500 P0665A11.18 ENOG411EKK4 ABCI17 Q9C9W0 AB17I_ARATH ABC transporter I family member 17 (ABC transporter ABCI.17) (AtABCI17) (MRP-related protein 1) (Non-intrinsic ABC protein 3) atstar1 knock-out line exhibited increased sensitivity to Al. The roots of the knockout line were severely inhibitedin the presence of 2 mM Al whereas those of the wild type were hardly affected. Sensitive to aluminum-J. Ma-2010 28677 ABC transporter I family member 17 (ABC transporter ABCI.17) (AtABCI17) (MRP-related protein 1) (Non-intrinsic ABC protein 3) plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; inorganic phosphate transmembrane transporter activity [GO:0005315]; transporter activity [GO:0005215]; phosphate ion transmembrane transport [GO:0035435] locus:2200226; AT1G67940 ABC transporter I family member Protein STAR1 (ABC transporter ABCI.12) (OsABCI12) (ABC transporter I family member 12) (Protein ALUMINUM SENSITIVE 1) (Protein SENSITIVE TO ALUMINUM RHIZOTOXICITY 1),Os06g0695800 protein (Fragment),Os10g0434900 protein (Fragment) Q0D9V6,A0A0P0X0B3,A0A0P0XV63 STAR1_ORYSJ,A0A0P0X0B3_ORYSJ,A0A0P0XV63_ORYSJ STAR1 ABCI12 ALS1 Os06g0695800 LOC_Os06g48060 P0622F03.26,Os06g0695800 OSNPB_060695800,Os10g0434900 OSNPB_100434900 DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but strong inhibition of root elongation when grown in the presence of Al or on acidic soil. {ECO:0000269|PubMed:19244140}. FUNCTION: Associates with STAR2 to form a functional transmembrane ABC transporter required for detoxification of aluminum (Al) in roots. Can specifically transport UDP-glucose. {ECO:0000269|PubMed:19244140}. ENOG411EKK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKK6 ABCI11 Q8LEF6 AB11I_ARATH ABC transporter I family member 11, chloroplastic (ABC transporter ABCI.11) (AtABCI11) (Non-intrinsic ABC protein 14) Complete loss of germination without exogenous sucrose-N. Keren-2010 30714 ABC transporter I family member 11, chloroplastic (ABC transporter ABCI.11) (AtABCI11) (Non-intrinsic ABC protein 14) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; membrane [GO:0016020]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] locus:2174653; AT5G14100 ABC transporter I family member 11 Os11g0490800 protein C7J9C6 C7J9C6_ORYSJ Os11g0490800 OSNPB_110490800 ENOG411EKK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411EKK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411EKK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411EKK2 TGD3 Q9AT00 TGD3_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic (ABC transporter I family member 13) (ABC transporter ABCI.13) (AtABCI13) (Non-intrinsic ABC protein 11) (AtNAP11) DISRUPTION PHENOTYPE: Disruption in the biosynthesis of ER-derived thylakoid lipids, and accumulation of oligogalactolipids, triacylglycerols (TAGs), and phosphatidates (PAs). Accumulates Gal(beta 1,6)betaGalDG, an unusual form of digalactosyldiacylglycerol (PubMed:23463370). Growth retardation, early bolting and no viable seeds produced (PubMed:20132520). {ECO:0000269|PubMed:17938172, ECO:0000269|PubMed:20132520, ECO:0000269|PubMed:23463370}. Slow growth; Few rosette leaves; Short roots; Sterile; Late flowering-N. Keren-2010 FUNCTION: ATPase transporter involved in lipid transfer from the endoplasmic reticulum (ER) to plastids, and necessary for thylakoids formation. Not involved in transition metal transport pathways (PubMed:20132520). {ECO:0000269|PubMed:17938172, ECO:0000269|PubMed:20132520}. ARA:GQT-2852-MONOMER; 37518 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic (ABC transporter I family member 13) (ABC transporter ABCI.13) (AtABCI13) (Non-intrinsic ABC protein 11) (AtNAP11) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215]; lipid transport [GO:0006869] locus:2206275; AT1G65410 protein TRIGALACTOSYLDIACYLGLYCEROL 3 chloroplastic-like ABC transporter family protein, expressed (Os03g0670100 protein) (cDNA clone:J023105K03, full insert sequence) Q10FF1 Q10FF1_ORYSJ LOC_Os03g46740 Os03g0670100 OSNPB_030670100 ENOG411EKK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 32 (OsC3H32),Os04g0671800 protein (Fragment) Q0J952,A0A0P0WGB2 C3H32_ORYSJ,A0A0P0WGB2_ORYSJ Os04g0671800 LOC_Os04g57600 OsJ_015854 OSJNBb0004A17.5,Os04g0671800 OSNPB_040671800 ENOG411EKK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os03g0386000 protein (WD-40 repeat family protein, putative, expressed),Os03g0386000 protein (WD-40 repeat family protein, putative, expressed) (cDNA clone:J023149A15, full insert sequence) Q10KG0,Q10KF9 Q10KG0_ORYSJ,Q10KF9_ORYSJ Os03g0386000 LOC_Os03g26870 Os03g0386000 OSNPB_030386000,Os03g0386000 LOC_Os03g26870 OSNPB_030386000 ENOG411EKKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, expressed (Os03g0829200 protein) (Putative hydrolase) (cDNA clone:002-140-A05, full insert sequence),Os03g0829200 protein Q850X4,A0A0P0W515 Q850X4_ORYSJ,A0A0P0W515_ORYSJ OSJNBb0027B08.31 LOC_Os03g61360 Os03g0829200 OSJNBa0010E04.13 OSNPB_030829200,Os03g0829200 OSNPB_030829200 ENOG411EKKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, expressed (Os03g0829100 protein) (Putative hydrolase),Os03g0829100 protein (Fragment) Q850X2,A0A0P0W595 Q850X2_ORYSJ,A0A0P0W595_ORYSJ OSJNBb0027B08.33 LOC_Os03g61340 Os03g0829100 OsJ_13212 OSJNBa0010E04.14 OSNPB_030829100,Os03g0829100 OSNPB_030829100 ENOG411EKKV F24M12.40 Q9SD45 Q9SD45_ARATH AT3g51000/F24M12_40 (Alpha/beta-Hydrolases superfamily protein) (Epoxide hydrolase-like protein) R-ATH-2142670; 36702 AT3g51000/F24M12_40 (Alpha/beta-Hydrolases superfamily protein) (Epoxide hydrolase-like protein) cytosol [GO:0005829]; hydrolase activity [GO:0016787] locus:2080938; AT3G51000 epoxide hydrolase NA NA NA NA NA NA NA ENOG411EKKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA epoxide hydrolase Os10g0498300 protein (Fragment),Os10g0498100 protein (Fragment),Os10g0498500 protein Q0IWN4,A0A0P0XW79,A0A0P0XWE4 Q0IWN4_ORYSJ,A0A0P0XW79_ORYSJ,A0A0P0XWE4_ORYSJ Os10g0498300 OSNPB_100498300,Os10g0498100 OSNPB_100498100,Os10g0498500 OSNPB_100498500 ENOG411EKKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA epoxide hydrolase NA NA NA NA NA NA NA ENOG411EKKZ Q9M9W5,A0A1I9LQ19 Q9M9W5_ARATH,A0A1I9LQ19_ARATH Alpha/beta-Hydrolases superfamily protein (Putative epoxide hydrolase),Alpha/beta-Hydrolases superfamily protein ARA:AT3G05600-MONOMER; R-ATH-2142670; 37199,27286 Alpha/beta-Hydrolases superfamily protein (Putative epoxide hydrolase),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2078067; AT3G05600 alpha/beta hydrolase fold Os01g0255100 protein (Putative epoxide hydrolase) (cDNA clone:001-017-A04, full insert sequence),Os01g0255000 protein (Putative epoxide hydrolase) (cDNA clone:001-202-G06, full insert sequence) (cDNA clone:J033091B05, full insert sequence) Q5NBT2,Q9S7P1 Q5NBT2_ORYSJ,Q9S7P1_ORYSJ Os01g0255100 Os01g0255100 OsJ_01143 OSNPB_010255100 P0705D01.26 P0711E10.16,Os01g0255000 Os01g0255000 OSNPB_010255000 P0705D01.25 P0711E10.15 ENOG411EKKD LEA7 Q96270 LEA7_ARATH Late embryogenesis abundant protein 7 FUNCTION: Involved in dehydration and freezing tolerance. Protects and stabilizes the enzyme activities of ADP-glucose-pyrophosphorylase (AGPase) and glucose-6-phosphate dehydrogenase (G6PDH) during drought stress and freezing. Prevents aggregation of leaf soluble proteins during drought stress. Does not stabilize liposomes during drying and rehydration. {ECO:0000269|PubMed:25988244}. 18101 Late embryogenesis abundant protein 7 cytosol [GO:0005829]; protein stabilization [GO:0050821]; response to freezing [GO:0050826]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in sepals, petals, pistils and stamens. {ECO:0000269|PubMed:19325888}. locus:2035109; AT1G52690 Inherit from euNOG: late embryogenesis abundant NA NA NA NA NA NA NA ENOG411EKKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Essential protein Yae1 N terminal NA NA NA NA NA NA NA ENOG411EKKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EKKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKKN TRN1 Q9FJ57,A0A1P8BAL5 TRN1_ARATH,A0A1P8BAL5_ARATH Protein TORNADO 1 (Protein LOPPED 1),Tornado 1 DISRUPTION PHENOTYPE: Severe dwarfism combined with twisted and malformed organs, and sterility. Loss of initial meristematic divisions in the epidermal/lateral root cap. Defection in basipetal transport of auxin (IAA) leading to several development aberrations. {ECO:0000269|PubMed:10887093, ECO:0000269|PubMed:16531491, ECO:0000269|PubMed:8674420, ECO:0000269|PubMed:9003284}. Primary roots of mutant plants were shorter than in the wild type hairy and twisted along longitudinal axis. Organ twisting was noticeable in leaf and stem too but not in cotyledons and hypocotyl. Inflorescence was twisted too containing twisted and abnormally shaped flowers with reduced fertility. Initial divisions in the epidermal/lateral root cap initial are defective in mutant roots. Furthermore lateral root cap cells develop in the epidermal position in trn1 roots. Apical dominance severely reduced.,Severely dwarfed with twisted and malformed organs and sterile. However cotyledon shape and symmetry were unchanged. The leaf lamina area was slightly but significantly reduced in mutatnt plants. The length of the first and second leaves was slightly reduced too. The leaf venation network had a severely reduced complexity: incomplete loops no tertiary or quaternary veins and vascular islands. Rosette leaf size and shape were severely affected. Mutant leaves had a rumpled surface with asymmetric laminas because of non-developed blade parts.,Similar to other trn1 mutants. Severely dwarfed with twisted and malformed organs sterile.,No obvious phenotype different from those of trn1-2 or trn2-4 was observed in double mutant. Abnormal division and positioning of lateral root cap-L. Dolan-2000 FUNCTION: Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization. Required for initial divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis. {ECO:0000269|PubMed:10887093, ECO:0000269|PubMed:16531491, ECO:0000269|PubMed:8674420, ECO:0000269|PubMed:9003284}. 156947,153712 Protein TORNADO 1 (Protein LOPPED 1),Tornado 1 integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; leaf morphogenesis [GO:0009965]; leaf vascular tissue pattern formation [GO:0010305]; meristem structural organization [GO:0009933]; multidimensional cell growth [GO:0009825]; radial pattern formation [GO:0009956] DEVELOPMENTAL STAGE: Strongly expressed in the shoot apical meristem (SAM) and the young leaf primordia. Also detected in the lamina of the cotyledons, especially in the mesophyll and vascular bundles. {ECO:0000269|PubMed:16531491}. TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems and flowers. Present in ovules, prominently in nucellus and integuments. {ECO:0000269|PubMed:16531491, ECO:0000269|PubMed:21658947}. locus:2173952; AT5G55540 NA NA NA NA NA NA NA NA ENOG411DTHH PGIC,MJB21.12 P34795,A0A1P8BG38 G6PI_ARATH,A0A1P8BG38_ARATH Glucose-6-phosphate isomerase, cytosolic (GPI) (EC 5.3.1.9) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI),Glucose-6-phosphate isomerase (EC 5.3.1.9) PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.,PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4. {ECO:0000256|RuleBase:RU000612}. ARA:AT5G42740-MONOMER; R-ATH-5628897;R-ATH-6798695;R-ATH-70171;R-ATH-70263; 5.3.1.9; 5.3.1.9 61718,58109 Glucose-6-phosphate isomerase, cytosolic (GPI) (EC 5.3.1.9) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI),Glucose-6-phosphate isomerase (EC 5.3.1.9) cytosol [GO:0005829]; glucose-6-phosphate isomerase activity [GO:0004347]; defense response to fungus, incompatible interaction [GO:0009817]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; response to cadmium ion [GO:0046686],glucose-6-phosphate isomerase activity [GO:0004347]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096] locus:2165462; AT5G42740 glucose-6-phosphate isomerase Glucose-6-phosphate isomerase, cytosolic B (GPI-B) (EC 5.3.1.9) (Phosphoglucose isomerase B) (PGI-B) (Phosphohexose isomerase B) (PHI-B),Glucose-6-phosphate isomerase, cytosolic A (GPI-A) (EC 5.3.1.9) (Phosphoglucose isomerase A) (PGI-A) (Phosphohexose isomerase A) (PHI-A),Glucose-6-phosphate isomerase (EC 5.3.1.9) (Fragment) P42863,P42862,A0A0P0WUR5 G6PIB_ORYSJ,G6PIA_ORYSJ,A0A0P0WUR5_ORYSJ Os06g0256500 LOC_Os06g14510 P0624H09.14,Os03g0776000 LOC_Os03g56460 OsJ_12779 OSJNBa0070N04.5,Os06g0256500 OSNPB_060256500 ENOG411EK59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc-finger of the MIZ type in Nse subunit NA NA NA NA NA NA NA ENOG411EK52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os10g0103600 protein A0A0N7KRB8 A0A0N7KRB8_ORYSJ Os10g0103600 OSNPB_100103600 ENOG411EK51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411DSC4 ILL1,ILL3,ILL5,ILR1,ILL2,ILL4 P54969,O81641,Q9SWX9,P54968,P54970,O04373,A0A1R7T3B5,A0A1I9LLI1,A0A1I9LLI2 ILL1_ARATH,ILL3_ARATH,ILL5_ARATH,ILR1_ARATH,ILL2_ARATH,ILL4_ARATH,A0A1R7T3B5_ARATH,A0A1I9LLI1_ARATH,A0A1I9LLI2_ARATH IAA-amino acid hydrolase ILR1-like 1 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 3 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 5 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 2 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 4 (EC 3.5.1.-) (jasmonoyl-L-amino acid hydrolase) (EC 3.5.1.127),IAA-leucine resistant (ILR)-like 1,Peptidase M20/M25/M40 family protein DISRUPTION PHENOTYPE: No effect on the sensitivity to the inhibition of root elongation caused by IAA-Leu or IAA-Ala. {ECO:0000269|PubMed:15155875}. Insensitive to IAA-Leu-G. Fink-1995,Insensitive to IAA-Ala-B. Bartel-1999 FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Ala, IAA-Asn and IAA-Tyr. {ECO:0000269|PubMed:11923288}.,FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA). {ECO:0000250|UniProtKB:P54968}.,FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Phe, IAA-Leu and IAA-Tyr (PubMed:7792599, PubMed:10072397, PubMed:11923288). Can also use IAA-Ala, IAA-Gly, IAA-Met and IAA-Glu as substrates with low efficiency (PubMed:7792599, PubMed:10072397, PubMed:11923288). No activity with IAA-Ile, IAA-1-O-beta-D-glucose or IAA-myo-inositol (PubMed:7792599, PubMed:10072397, PubMed:11923288). Is the most efficient enzyme of the ILL family for IAA-Leu hydrolysis (PubMed:11923288). Important for IAA-Leu and IAA-Phe hydrolysis in roots (PubMed:15155875). May act with ILL2 to provide free IAA to germinating seedlings (PubMed:15155875). {ECO:0000269|PubMed:10072397, ECO:0000269|PubMed:11923288, ECO:0000269|PubMed:7792599}.,FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Ala, IAA-Leu, IAA-Met, IAA-Phe, IAA-Ser, IAA-Thr, IAA-Tyr and IAA-Val (PubMed:11923288). Is the most efficient enzyme of the ILL family for IAA-Ala (PubMed:11923288). Not important for IAA-Leu hydrolysis in roots (PubMed:15155875). May act with ILR1 to provide free IAA to germinating seedlings (PubMed:15155875). {ECO:0000269|PubMed:11923288, ECO:0000269|PubMed:15155875}.,FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Ala, IAA-Asn, IAA-Cys, IAA-Glu, IAA-Met, IAA-Ser and IAA-Gly (PubMed:10072397, PubMed:11923288). Has a lower efficiency with IAA-Phe, IAA-Leu and IAA-Val and no activity with IAA-Ile (PubMed:10072397, PubMed:11923288). Important for IAA-Leu hydrolysis in roots (PubMed:15155875). Also hydrolyzes amino acid conjugates of jasmonic acid and 12-hydroxy jasmonic acid (PubMed:24052260). {ECO:0000269|PubMed:10072397, ECO:0000269|PubMed:11923288, ECO:0000269|PubMed:15155875, ECO:0000269|PubMed:24052260}. ARA:AT5G56650-MONOMER;,ARA:AT5G54140-MONOMER;,ARA:AT1G51780-MONOMER;,ARA:AT1G51760-MONOMER; 3.5.1.-,3.5.1.-; 3.5.1.127 47692,46791,47381,48015,47856,48263,33394,36283,34073 IAA-amino acid hydrolase ILR1-like 1 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 3 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 5 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 2 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 4 (EC 3.5.1.-) (jasmonoyl-L-amino acid hydrolase) (EC 3.5.1.127),IAA-leucine resistant (ILR)-like 1,Peptidase M20/M25/M40 family protein endoplasmic reticulum lumen [GO:0005788]; Golgi apparatus [GO:0005794]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; metabolic process [GO:0008152],IAA-amino acid conjugate hydrolase activity [GO:0010178]; metal ion binding [GO:0046872]; auxin metabolic process [GO:0009850],endoplasmic reticulum lumen [GO:0005788]; IAA-amino acid conjugate hydrolase activity [GO:0010178]; metal ion binding [GO:0046872]; metabolic process [GO:0008152]; regulation of systemic acquired resistance [GO:0010112],endoplasmic reticulum [GO:0005783]; IAA-Leu conjugate hydrolase activity [GO:0010211]; IAA-Phe conjugate hydrolase activity [GO:0010210]; metal ion binding [GO:0046872]; auxin metabolic process [GO:0009850],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; IAA-Ala conjugate hydrolase activity [GO:0010179]; IAA-amino acid conjugate hydrolase activity [GO:0010178]; metal ion binding [GO:0046872]; auxin metabolic process [GO:0009850],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; plasma membrane [GO:0005886]; IAA-Ala conjugate hydrolase activity [GO:0010179]; metal ion binding [GO:0046872]; metabolic process [GO:0008152]; response to wounding [GO:0009611],hydrolase activity [GO:0016787]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in leaves, stems, roots, siliques and flowers. Detected in pollen. {ECO:0000269|PubMed:15155875}.,TISSUE SPECIFICITY: Expressed in cotyledons, leaves, and hypocotyls of seedlings, and in leaves and pollen of mature plants. {ECO:0000269|PubMed:15155875}.,TISSUE SPECIFICITY: Expressed in leaves, stems, siliques, seeds and flowers. Detected in central regions of cotyledons, hypocotyl, radicle of mature embryos and seedlings, micropyle of siliques and in pollen. {ECO:0000269|PubMed:15155875}.,TISSUE SPECIFICITY: Expressed in leaves, stems, siliques, seeds and flowers. Detected in the distal tips of cotyledons and seedling leaves, hydathodes of leaves from mature plants, pollen, ovules and developing seeds. {ECO:0000269|PubMed:15155875}.,TISSUE SPECIFICITY: Expressed in leaves, stems, roots, siliques and flowers. Detected in the vascular tissue of cotyledons and roots, in adult leaves, stems, siliques, petals, hydathodes and in silique abscission zones and funicles. {ECO:0000269|PubMed:10072397, ECO:0000269|PubMed:15155875}. locus:2165076;,locus:2166557;,locus:2017577;,locus:2075382;,locus:2164976;,locus:2017607; AT5G56650,AT5G54140,AT1G51780,AT3G02875,AT5G56660,AT1G51760 Iaa-amino acid hydrolase IAA-amino acid hydrolase ILR1-like 1 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 5 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 8 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 4 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 3 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 7 (EC 3.5.1.-),IAA-amino acid hydrolase ILR1-like 9 (EC 3.5.1.-),Os01g0560000 protein (Fragment),Os07g0249900 protein (Fragment),Os07g0249700 protein (Fragment),Os03g0836800 protein (Fragment),Os07g0249800 protein (Fragment),Os04g0521800 protein (Fragment),Os07g0250000 protein Q8S9S4,Q7XUA8,Q8H3C8,Q851L6,Q851L5,Q8H3C9,Q8H3C7,A0A0P0V439,A0A0N7KN75,A0A0P0X550,A0A0P0W5B6,A0A0P0X4T1,A0A0P0WCJ9,A0A0P0X486 ILL1_ORYSJ,ILL5_ORYSJ,ILL8_ORYSJ,ILL4_ORYSJ,ILL3_ORYSJ,ILL7_ORYSJ,ILL9_ORYSJ,A0A0P0V439_ORYSJ,A0A0N7KN75_ORYSJ,A0A0P0X550_ORYSJ,A0A0P0W5B6_ORYSJ,A0A0P0X4T1_ORYSJ,A0A0P0WCJ9_ORYSJ,A0A0P0X486_ORYSJ ILL1 IAR Os01g0560000 LOC_Os01g37960 B1064G04.44 OsJ_002169,ILL5 Os04g0521800 LOC_Os04g44110 OSJNBa0019D11.19,ILL8 Os07g0249800 LOC_Os07g14600 P0021G06.115,ILL4 Os03g0836900 LOC_Os03g62070 OSJNBa0042I09.28,ILL3 Os03g0836800 LOC_Os03g62060 OSJNBa0042I09.29 OSJNBa0096I06.2,ILL7 Os07g0249700 LOC_Os07g14590 P0021G06.114,ILL9 Os07g0249900 LOC_Os07g14610 P0021G06.116-1 P0021G06.116-2,Os01g0560000 OSNPB_010560000,Os07g0249900 OSNPB_070249900,Os07g0249700 OSNPB_070249700,Os03g0836800 OSNPB_030836800,Os07g0249800 OSNPB_070249800,Os04g0521800 OSNPB_040521800,Os07g0250000 OSNPB_070250000 FUNCTION: Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA). {ECO:0000250}. ENOG411DSC3 MMS19 Q0WVF8 MMS19_ARATH MMS19 nucleotide excision repair protein homolog (MET18 homolog) (MMS19-like protein) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:23104832}. FUNCTION: May select specific target apoproteins to which a Fe-S cluster produced by the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) pathway is transferred. {ECO:0000269|PubMed:23104832}. 124255 MMS19 nucleotide excision repair protein homolog (MET18 homolog) (MMS19-like protein) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2162697; AT5G48120 Inherit from KOG: MMS19 nucleotide excision repair homolog (S. cerevisiae) DNA repair/transcription protein Mms19-like protein (Os07g0177100 protein) (cDNA clone:J023047J07, full insert sequence),Os07g0177100 protein (Fragment) Q6ZEY8,A0A0P0X2Z2 Q6ZEY8_ORYSJ,A0A0P0X2Z2_ORYSJ P0534H07.32-1 Os07g0177100 OSNPB_070177100,Os07g0177100 OSNPB_070177100 ENOG411DSC8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 10 Os10g0351700 protein (Fragment) A0A0P0XT95 A0A0P0XT95_ORYSJ Os10g0351700 OSNPB_100351700 ENOG411DSCG APE2 F4JNY0,A0A1P8B5S9,A0A1P8B5S6,A0A1P8B5S2 APE2_ARATH,A0A1P8B5S9_ARATH,A0A1P8B5S6_ARATH,A0A1P8B5S2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18) (Apurinic-apyrimidinic endonuclease 2),Endonuclease/exonuclease/phosphatase family protein DISRUPTION PHENOTYPE: No visible phenotype (PubMed:19172180). Ape2 arp double mutants have no visible phenotype (PubMed:19172180). Ape1l ape2 double mutants are embryo lethal (PubMed:19172180). {ECO:0000269|PubMed:19172180}. FUNCTION: Exhibits apurinic/apyrimidinic (AP) endonuclease activity in vitro (PubMed:25569774). By contrast, another report show that APE2 has no biochemical activity (PubMed:25228464). Unable to catalyze the conversion of 3'-phosphor-alpha,beta-unsaturated aldehyde (3'-PUA) to 3'-OH (PubMed:25228464, PubMed:25569774). Has no in vitro 3'-phosphatase activity (PubMed:25228464, PubMed:25569774). Redundant with APE1L and at least one functional allele is required for seed viability (PubMed:19172180). Has a strong non-specific affinity to DNA (PubMed:25228464). {ECO:0000269|PubMed:19172180, ECO:0000269|PubMed:25228464, ECO:0000269|PubMed:25569774}. 4.2.99.18 67825,65646,53324,67674 DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18) (Apurinic-apyrimidinic endonuclease 2),Endonuclease/exonuclease/phosphatase family protein nucleus [GO:0005634]; DNA-(apurinic or apyrimidinic site) lyase activity [GO:0003906]; double-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008311]; zinc ion binding [GO:0008270]; base-excision repair [GO:0006284],endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; zinc ion binding [GO:0008270]; DNA repair [GO:0006281] TISSUE SPECIFICITY: Expressed in both vegetative and reproductive organs. {ECO:0000269|PubMed:25228464}. locus:2135164; AT4G36050 DNA-(Apurinic or apyrimidinic site) lyase AP endonuclease 2-like (Os09g0536000 protein) (cDNA clone:J033118C13, full insert sequence) Q69JZ1 Q69JZ1_ORYSJ Os09g0536000 Os09g0536000 OSNPB_090536000 P0569E11.11 ENOG411DSCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XS domain Expressed protein (Os11g0579700 protein) (cDNA clone:002-130-E01, full insert sequence) B7F0F3 B7F0F3_ORYSJ Os11g0579700 LOC_Os11g37070 OSNPB_110579700 ENOG411DSCB Q9SA72 Y1357_ARATH Probable receptor-like protein kinase At1g30570 (EC 2.7.11.-) 2.7.11.- 93947 Probable receptor-like protein kinase At1g30570 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; response to brassinosteroid [GO:0009741]; unidimensional cell growth [GO:0009826] locus:2204564; AT1G30570 receptor-like protein kinase Os07g0147600 protein (Putative PTH-2, resistance gene (PTO kinase) homologs) (cDNA clone:J013033H24, full insert sequence),OSJNBa0058K23.13 protein (Os04g0619600 protein),Os07g0147600 protein (Fragment) Q6ZF70,Q7XTT9,A0A0P0X2H9 Q6ZF70_ORYSJ,Q7XTT9_ORYSJ,A0A0P0X2H9_ORYSJ Os07g0147600 OsJ_23090 OSNPB_070147600 P0022E03.17,Os04g0619600 OsJ_16193 OSJNBa0058K23.13 OSNPB_040619600,Os07g0147600 OSNPB_070147600 ENOG411DSCN CDS2,CDS3,CDS1 O49639,Q1PE48,O04928,F4JL60,F4JL62 CDS2_ARATH,CDS3_ARATH,CDS1_ARATH,F4JL60_ARATH,F4JL62_ARATH Phosphatidate cytidylyltransferase 2 (EC 2.7.7.41) (CDP-DAG synthase 2) (CDP-DG synthase 2) (CDP-diacylglycerol synthase 2) (CDS2) (CDP-diglyceride pyrophosphorylase 2) (CDP-diglyceride synthase 2) (CTP:phosphatidate cytidylyltransferase 2),Phosphatidate cytidylyltransferase 3 (EC 2.7.7.41) (CDP-DAG synthase 3) (CDP-DG synthase 3) (CDP-diacylglycerol synthase 3) (CDS3) (CDP-diglyceride pyrophosphorylase 3) (CDP-diglyceride synthase 3) (CTP:phosphatidate cytidylyltransferase 3),Phosphatidate cytidylyltransferase 1 (EC 2.7.7.41) (CDP-DAG synthase 1) (CDP-DG synthase 1) (CDP-diacylglycerol synthase 1) (CDS1) (CDP-diglyceride pyrophosphorylase 1) (CDP-diglyceride synthase 1) (CTP:phosphatidate cytidylyltransferase 1),Phosphatidate cytidylyltransferase (EC 2.7.7.41) FUNCTION: May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction. {ECO:0000269|PubMed:20442275}.,FUNCTION: May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction. {ECO:0000256|PIRNR:PIRNR018269}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3. {ECO:0000269|PubMed:20442275}.,PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3. {ECO:0000256|PIRNR:PIRNR018269, ECO:0000256|RuleBase:RU003938}.,PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3. {ECO:0000256|RuleBase:RU003938}. MetaCyc:AT1G62430-MONOMER; R-ATH-1483148;R-ATH-1483226; 2.7.7.41 48247,54924,48660,50966,41821 Phosphatidate cytidylyltransferase 2 (EC 2.7.7.41) (CDP-DAG synthase 2) (CDP-DG synthase 2) (CDP-diacylglycerol synthase 2) (CDS2) (CDP-diglyceride pyrophosphorylase 2) (CDP-diglyceride synthase 2) (CTP:phosphatidate cytidylyltransferase 2),Phosphatidate cytidylyltransferase 3 (EC 2.7.7.41) (CDP-DAG synthase 3) (CDP-DG synthase 3) (CDP-diacylglycerol synthase 3) (CDS3) (CDP-diglyceride pyrophosphorylase 3) (CDP-diglyceride synthase 3) (CTP:phosphatidate cytidylyltransferase 3),Phosphatidate cytidylyltransferase 1 (EC 2.7.7.41) (CDP-DAG synthase 1) (CDP-DG synthase 1) (CDP-diacylglycerol synthase 1) (CDS1) (CDP-diglyceride pyrophosphorylase 1) (CDP-diglyceride synthase 1) (CTP:phosphatidate cytidylyltransferase 1),Phosphatidate cytidylyltransferase (EC 2.7.7.41) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; phosphatidate cytidylyltransferase activity [GO:0004605]; CDP-diacylglycerol biosynthetic process [GO:0016024]; phosphatidylglycerol biosynthetic process [GO:0006655],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; phosphatidate cytidylyltransferase activity [GO:0004605]; CDP-diacylglycerol biosynthetic process [GO:0016024]; developmental vegetative growth [GO:0080186]; phosphatidylglycerol biosynthetic process [GO:0006655]; phospholipid biosynthetic process [GO:0008654],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; phosphatidate cytidylyltransferase activity [GO:0004605]; CDP-diacylglycerol biosynthetic process [GO:0016024]; developmental vegetative growth [GO:0080186],integral component of membrane [GO:0016021]; phosphatidate cytidylyltransferase activity [GO:0004605]; CDP-diacylglycerol biosynthetic process [GO:0016024] locus:2116272;,locus:2027144;,locus:2132026; AT4G22340,AT4G26770,AT1G62430 Phosphatidate cytidylyltransferase Phosphatidate cytidylyltransferase (EC 2.7.7.41),Phosphatidate cytidylyltransferase (EC 2.7.7.41) (Fragment) Q8S601,A0A0P0V8C6,A0A0P0V8H0 Q8S601_ORYSJ,A0A0P0V8C6_ORYSJ,A0A0P0V8H0_ORYSJ OSJNBa0073L20.5 LOC_Os10g17990 Os10g0327300 OSNPB_100327300,Os01g0758400 OSNPB_010758400 FUNCTION: May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction. {ECO:0000256|PIRNR:PIRNR018269}. ENOG411DSCI RBOHE O81211 RBOHE_ARATH Respiratory burst oxidase homolog protein E (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHE) (AtRBOHE) FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide. ARA:AT1G19230-MONOMER; R-ATH-3299685;R-ATH-6798695; 1.11.1.-; 1.6.3.- 107703 Respiratory burst oxidase homolog protein E (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHE) (AtRBOHE) integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor [GO:0050664]; peroxidase activity [GO:0004601] TISSUE SPECIFICITY: Expressed in roots, inflorescences, leaves and stems. {ECO:0000269|PubMed:9628030}. locus:2202210; AT1G19230 respiratory burst oxidase Os09g0438000 protein (Putative respiratory burst oxidase protein E),Os08g0453700 protein,Os09g0438000 protein Q69LJ7,A0A0P0XGC6,A0A0P0XMP9 Q69LJ7_ORYSJ,A0A0P0XGC6_ORYSJ,A0A0P0XMP9_ORYSJ OJ1328_D07.24-1 P0556H01.7-1 Os09g0438000 OsJ_29504 OSNPB_090438000,Os08g0453700 OSNPB_080453700,Os09g0438000 OSNPB_090438000 ENOG411DSCU XBAT35 Q4FE47 XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT35) (Protein XB3 homolog 5) (RING-type E3 ubiquitin transferase XBAT35) FUNCTION: No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro. {ECO:0000269|PubMed:15644464}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 50055 Putative E3 ubiquitin-protein ligase XBAT35 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBAT35) (Protein XB3 homolog 5) (RING-type E3 ubiquitin transferase XBAT35) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842] locus:2086263; AT3G23280 protein ubiquitination Probable E3 ubiquitin-protein ligase XBOS34 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS34) (RING-type E3 ubiquitin transferase XBOS34) (XB3 protein homolog 4),Os07g0446100 protein Q7XI08,A0A0P0X5F7 XB34_ORYSJ,A0A0P0X5F7_ORYSJ XBOS34 Os07g0446100 LOC_Os07g26490 P0030H06.109-1 P0030H06.109-2,Os07g0446100 OSNPB_070446100 ENOG411DSCZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein phosphatase 2A regulatory B subunit (B56 family) Serine/threonine protein phosphatase 2A regulatory subunit Q6YXJ6 Q6YXJ6_ORYSJ Os07g0274800 B1029H08.25 OsJ_23826 OSNPB_070274800 FUNCTION: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000256|PIRNR:PIRNR028043}. ENOG411EMR7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin NA NA NA NA NA NA NA ENOG411DSG6 A0A1P8ATS8,A0A1P8ATR6,F4I6L0 A0A1P8ATS8_ARATH,A0A1P8ATR6_ARATH,F4I6L0_ARATH Uncharacterized protein R-ATH-6798695; 102532,102603,103972 Uncharacterized protein cytosol [GO:0005829]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; retrograde transport, endosome to Golgi [GO:0042147],cytosol [GO:0005829]; integral component of membrane [GO:0016021]; retromer complex [GO:0030904]; protein transporter activity [GO:0008565]; retrograde transport, endosome to Golgi [GO:0042147] locus:2033182; AT1G50730 UPF0505 protein NA NA NA NA NA NA NA ENOG411EGBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0561900 protein A0A0P0VKM5 A0A0P0VKM5_ORYSJ Os02g0561900 OSNPB_020561900 ENOG411EGBS NAC006 Q9LR74 NAC6_ARATH NAC domain-containing protein 6 (ANAC006) 32203 NAC domain-containing protein 6 (ANAC006) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2020803; AT1G03490 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EGBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EGBQ Q9ZQ24 Q9ZQ24_ARATH Expressed protein (Selenium binding protein) (Uncharacterized protein At2g24440/T28I24.17) 20712 Expressed protein (Selenium binding protein) (Uncharacterized protein At2g24440/T28I24.17) locus:2061097; AT2G24440 Selenium binding NA NA NA NA NA NA NA ENOG411EGBW F19K16.7 Q9SSD7,Q9CA98,A0A1P8AQD6 Q9SSD7_ARATH,Q9CA98_ARATH,A0A1P8AQD6_ARATH F18B13.5 protein,At1g79970/F19K16.7 (F19K16.7/F19K16.7) (Uncharacterized protein F19K16.7),Uncharacterized protein 23967,26166,11896 F18B13.5 protein,At1g79970/F19K16.7 (F19K16.7/F19K16.7) (Uncharacterized protein F19K16.7),Uncharacterized protein locus:2016359; AT1G79970 NA NA NA NA NA NA NA NA ENOG411EGBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSG5 EXO70-G1 Q7XYW9 Q7XYW9_ARATH EXO70-G1 protein (Exocyst subunit exo70 family protein G1) R-ATH-5620916; 77696 EXO70-G1 protein (Exocyst subunit exo70 family protein G1) cytosol [GO:0005829]; exocyst [GO:0000145]; exocytosis [GO:0006887] locus:2125229; AT4G31540 Exo70 exocyst complex subunit Os06g0698600 protein,Os02g0149700 protein (Fragment),Os10g0140100 protein,Os02g0231850 protein (Fragment) A0A0P0X0E1,A0A0N7KEP5,A0A0P0XS96,A0A0P0VGU4 A0A0P0X0E1_ORYSJ,A0A0N7KEP5_ORYSJ,A0A0P0XS96_ORYSJ,A0A0P0VGU4_ORYSJ Os06g0698600 OSNPB_060698600,Os02g0149700 OSNPB_020149700,Os10g0140100 OSNPB_100140100,Os02g0231850 OSNPB_020231850 ENOG411EGBY O04572,F4HR59 O04572_ARATH,F4HR59_ARATH Paired amphipathic helix (PAH2) superfamily protein (T7N9.34),Paired amphipathic helix repeat-containing protein 15417,21359 Paired amphipathic helix (PAH2) superfamily protein (T7N9.34),Paired amphipathic helix repeat-containing protein chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122],chromatin [GO:0000785]; histone deacetylase complex [GO:0000118]; nucleic acid binding [GO:0003676]; RNA polymerase II transcription corepressor activity [GO:0001106]; histone deacetylation [GO:0016575]; negative regulation of transcription from RNA polymerase II promoter [GO:0000122] locus:2016024;,locus:2205754; AT1G27250,AT1G27220 Paired amphipathic helix repeat-containing protein NA NA NA NA NA NA NA ENOG411DSGN MOS1 Q9SB63,A0A1P8B6K1,A0A1P8B6K2 MOS1_ARATH,A0A1P8B6K1_ARATH,A0A1P8B6K2_ARATH Protein MODIFIER OF SNC1 1 (MODIFIER OF snc1, 1),Modifier of snc1 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:20439546}. FUNCTION: Involved in the regulation of the chromatin structure and DNA methylation at the SNC1 locus. Regulates the expression of SNC1 at chromatin level. {ECO:0000269|PubMed:20439546}. 153687,153775,151209 Protein MODIFIER OF SNC1 1 (MODIFIER OF snc1, 1),Modifier of snc1 covalent chromatin modification [GO:0016569] AT4G24680 protein MODIFIER OF SNC1 Os12g0566200 protein (Fragment) A0A0P0YBZ4 A0A0P0YBZ4_ORYSJ Os12g0566200 OSNPB_120566200 ENOG411EDR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DSH5 DOF5.6 Q9FM03 DOF56_ARATH Dof zinc finger protein DOF5.6 (AtDOF5.6) Homozygotes have a WT phenotype. Expression of At5G62940 is not altered.,Plants are dwarfed. In the hca2 mutant inflorescence stems petiolesand main veins of leaves the ordered patterning of vascular bundles is replaced by a continuous vascular cambium undergoing periclinal divisions to produce radial files of xylem and phloem.Interfascicular cambium is extensively formed/developed between the vascular bundles and the area normally occupied by the interfascicular parenchyma cells is replaced by vascular tissues. Continuous phloem tissue consisting of several layers of sieve tubes and companion cells encircles the vascular cambium in hca2. The vascular tissue in the hypocotyls and roots of hca2 seedlings exhibit a WT phenotye. FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 39801 Dof zinc finger protein DOF5.6 (AtDOF5.6) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; phloem or xylem histogenesis [GO:0010087]; positive regulation of transcription, DNA-templated [GO:0045893]; procambium histogenesis [GO:0010067]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2170753; AT5G62940 zinc finger protein Os02g0707200 protein (Fragment) Q0DY98 Q0DY98_ORYSJ Os02g0707200 Os02g0707200 OSNPB_020707200 ENOG411EABS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411E98Z TCX4 Q84JZ8 TCX4_ARATH Protein tesmin/TSO1-like CXC 4 (AtTCX4) FUNCTION: Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. 70974 Protein tesmin/TSO1-like CXC 4 (AtTCX4) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355] locus:2114825; AT3G04850 Pfam:CXC NA NA NA NA NA NA NA ENOG411E98Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc knuckle Os04g0313600 protein (Os04g0324550 protein) A0A0P0W916 A0A0P0W916_ORYSJ Os04g0324550 Os04g0313600 OSNPB_040313600 OSNPB_040324550 ENOG411E98W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E98R Q9FZB8,C0LGL4,C0LGG3,F4IB68,Q9FZB6,A0A1P8AWS5,A0A1P8ARS9,F4I065,A0A1P8AVQ6,F4IJP7,F4IB62,F4IB69,F4IB63 Y5181_ARATH,Y2289_ARATH,Y5182_ARATH,F4IB68_ARATH,Q9FZB6_ARATH,A0A1P8AWS5_ARATH,A0A1P8ARS9_ARATH,F4I065_ARATH,A0A1P8AVQ6_ARATH,F4IJP7_ARATH,F4IB62_ARATH,F4IB69_ARATH,F4IB63_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51810 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At2g28960 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g51820 (EC 2.7.11.1),Kinase-like protein,Leucine-rich repeat protein kinase family protein (Uncharacterized protein T14L22.4),Leucine-rich repeat protein kinase family protein 2.7.11.1 97230,98965,98098,23569,76632,77463,68450,98867,98330,98085,95298,96121,98076 Probable LRR receptor-like serine/threonine-protein kinase At1g51810 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At2g28960 (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At1g51820 (EC 2.7.11.1),Kinase-like protein,Leucine-rich repeat protein kinase family protein (Uncharacterized protein T14L22.4),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],kinase activity [GO:0016301],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2017537;,locus:2066133;,locus:2017647;,locus:2195860;,locus:2017527;,locus:2028446;,locus:2066163;,locus:2195825;,locus:2824870; AT1G51810,AT2G28960,AT1G51820,AT1G51840,AT1G51830,AT1G49100,AT2G29000,AT1G51805,AT1G51850 leucine-rich repeat protein kinase NA NA NA NA NA NA NA ENOG411E98Q F12P19.15 Q6E287,Q9SIB7,Q9SRZ3,O22159,Q9ZW92,Q5S4X4,A0A1P8B287,A0A1P8B293,A0A1P8B285,A0A1P8B289,B3H7E7 Q6E287_ARATH,Q9SIB7_ARATH,Q9SRZ3_ARATH,O22159_ARATH,Q9ZW92_ARATH,Q5S4X4_ARATH,A0A1P8B287_ARATH,A0A1P8B293_ARATH,A0A1P8B285_ARATH,A0A1P8B289_ARATH,B3H7E7_ARATH Transmembrane protein, putative (DUF247),Transmembrane protein, putative (DUF247) (Uncharacterized protein At2g28580),At1g65985 (F12P19.15) (Transmembrane protein, putative (DUF247)),Expressed protein (Transmembrane protein, putative (DUF247)) (Uncharacterized protein At2g44930),F5A8.6 protein (Transmembrane protein, putative (DUF247)) 47082,54077,53135,59209,46563,61794,61196,54808,63360,59631,41665 Transmembrane protein, putative (DUF247),Transmembrane protein, putative (DUF247) (Uncharacterized protein At2g28580),At1g65985 (F12P19.15) (Transmembrane protein, putative (DUF247)),Expressed protein (Transmembrane protein, putative (DUF247)) (Uncharacterized protein At2g44930),F5A8.6 protein (Transmembrane protein, putative (DUF247)) integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2033671;,locus:504956320;,locus:2055012;,locus:2056603; AT1G67150,AT1G65985,AT2G44930,AT2G28580 Plant protein of unknown function NA NA NA NA NA NA NA ENOG411E98N CIPK13 O22971 CIPKD_ARATH CBL-interacting serine/threonine-protein kinase 13 (EC 2.7.11.1) (SNF1-related kinase 3.7) (SOS2-like protein kinase PKS10) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 56731 CBL-interacting serine/threonine-protein kinase 13 (EC 2.7.11.1) (SNF1-related kinase 3.7) (SOS2-like protein kinase PKS10) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] locus:2040824; AT2G34180 NAF domain NA NA NA NA NA NA NA ENOG411E98M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjC domain hydroxylase NA NA NA NA NA NA NA ENOG411E98H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRM1_C NA NA NA NA NA NA NA ENOG411E98F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZZP GCH1 Q9SFV7,F4JED5 GCH1_ARATH,F4JED5_ARATH GTP cyclohydrolase 1 (EC 3.5.4.16) (GTP cyclohydrolase I),GTP cyclohydrolase I FUNCTION: GTP cyclohydrolase 1 is the first enzyme in the biosynthetic pathway leading to folic acid. {ECO:0000269|PubMed:12221287}. PATHWAY: Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1. ARA:AT3G07270-MONOMER; R-ATH-1474151; 3.5.4.16; 3.5.4.16 51380,51483 GTP cyclohydrolase 1 (EC 3.5.4.16) (GTP cyclohydrolase I),GTP cyclohydrolase I cytoplasm [GO:0005737]; GTP binding [GO:0005525]; GTP cyclohydrolase I activity [GO:0003934]; zinc ion binding [GO:0008270]; 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [GO:0035998]; tetrahydrobiopterin biosynthetic process [GO:0006729]; tetrahydrofolate biosynthetic process [GO:0046654],cytoplasm [GO:0005737]; GTP cyclohydrolase I activity [GO:0003934]; tetrahydrofolate biosynthetic process [GO:0046654] locus:2098525; AT3G07270 GTP cyclohydrolase I Os04g0662700 protein (Fragment) A0A0P0WG81 A0A0P0WG81_ORYSJ Os04g0662700 OSNPB_040662700 ENOG411DZZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipase A(1) DAD1 chloroplastic-like Lipase family protein (Os11g0146600 protein) Q2RAM0 Q2RAM0_ORYSJ Os11g0146600 LOC_Os11g04940 OsJ_32952 OSNPB_110146600 ENOG411DZZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q2R367 Q2R367_ORYSJ LOC_Os11g32960 Os11g0534300 OSNPB_110534300 ENOG411DZZS TH1 Q5M731 TPS1L_ARATH Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic [Includes: Thiamine-phosphate synthase (TP synthase) (TPS) (EC 2.5.1.3) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase); Hydroxymethylpyrimidine kinase (HMP kinase) (EC 2.7.1.49)] DISRUPTION PHENOTYPE: Seedling lethality. Mutant plants can grow on synthetic medium supplied with thiamine. {ECO:0000269|PubMed:17174261}. Seedling lethal without exogenous thiamine-H. Nam-1998 FUNCTION: Essential for thiamine biosynthesis. Bifunctional enzyme that catalyzes the phosphorylation of hydroxymethylpyrimidine phosphate (HMP-P) to HMP-PP and condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). {ECO:0000269|PubMed:16666289, ECO:0000269|PubMed:17174261}. PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine phosphate from 4-amino-2-methyl-5-diphosphomethylpyrimidine and 4-methyl-5-(2-phosphoethyl)-thiazole: step 1/1.; PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; 4-amino-2-methyl-5-diphosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole: step 2/3. ARA:AT1G22940-MONOMER;MetaCyc:AT1G22940-MONOMER; 2.5.1.3; 2.7.1.49 55813 Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic [Includes: Thiamine-phosphate synthase (TP synthase) (TPS) (EC 2.5.1.3) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase); Hydroxymethylpyrimidine kinase (HMP kinase) (EC 2.7.1.49)] chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; hydroxymethylpyrimidine kinase activity [GO:0008902]; metal ion binding [GO:0046872]; phosphomethylpyrimidine kinase activity [GO:0008972]; thiamine-phosphate diphosphorylase activity [GO:0004789]; thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229] locus:2017734; AT1G22940 Phosphomethylpyrimidine kinase Probable thiamine biosynthetic bifunctional enzyme, chloroplastic [Includes: Thiamine-phosphate synthase (TP synthase) (TPS) (EC 2.5.1.3) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase); Hydroxymethylpyrimidine kinase (HMP kinase) (EC 2.7.1.49)],Os12g0192500 protein,Os12g0192500 protein (Fragment) Q2QWK9,A0A0P0Y8E4,A0A0P0Y851 TPS1_ORYSJ,A0A0P0Y8E4_ORYSJ,A0A0P0Y851_ORYSJ Os12g0192500 LOC_Os12g09000 OsJ_35490,Os12g0192500 OSNPB_120192500 FUNCTION: Essential for thiamine biosynthesis. Bifunctional enzyme that catalyzes the phosphorylation of hydroxymethylpyrimidine phosphate (HMP-P) to HMP-PP and condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). {ECO:0000250|UniProtKB:Q5M731}. ENOG411DZZT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411DZZU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Actin-fragmin kinase catalytic Os01g0347000 protein (Putative PROPYZAMIDE-HTPERSENSITIVE 1) Q5Z8E0 Q5Z8E0_ORYSJ Os01g0347000 B1146B04.37 OsJ_01667 OSNPB_010347000 P0440D10.5 ENOG411DZZV KNAT2,KNAT6 P46640,Q84JS6,A0A1P8ANX6 KNAT2_ARATH,KNAT6_ARATH,A0A1P8ANX6_ARATH Homeobox protein knotted-1-like 2 (Protein ATK1) (Protein KNAT2),Homeobox protein knotted-1-like 6 (Protein KNAT6),Homeobox knotted-like protein Fruits produced by bp-1 knat2 and bp-1 knat2 plants showed a wild-type aspect both in replum and valves.,No visible phenotype.,pny phenotype,Similar to bp single mutants.,Similar to bp;pny double mutant.,Fully rescues downward orientation of siliques characteristic of bp single mutants. Shorter than WT. Rescuse partial loss of apical dominance characteristic of single bp mutants. Partial rescue of primary inflorescence internode length characteristic of bp single mutants.,Similar to knat6;bp;pny except htat shows greater suppression on bp pny silique orientation defects.,WT,Partially rescues the downward orientation of siliques characteristic of bp single mutants. Rescue of partial loss of apical dominance phenotype characteristic of bp mutants. Short plants although taller than bp single mutants. Partial rescue of primary inflorescence stem internode length characteristic of bp single mutants.,Partially suppresses pny;bp phenotypes such as dwarfism loss of apical dominance and silique orientation. FUNCTION: May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.,FUNCTION: Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. 35638,36934,36109 Homeobox protein knotted-1-like 2 (Protein ATK1) (Protein KNAT2),Homeobox protein knotted-1-like 6 (Protein KNAT6),Homeobox knotted-like protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; specification of carpel identity [GO:0010094],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; meristem maintenance [GO:0010073],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, in the receptacle and developing pistil of flowers and in axillary buds of inflorescence stems.,TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. locus:2026810;,locus:2028075; AT1G70510,AT1G23380 Homeobox protein knotted-1-like NA NA NA NA NA NA NA ENOG411DZZW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caleosin related protein Os06g0254600 protein (Putative calcium binding protein),Os06g0254300 protein (Fragment),Os06g0254300 protein (Putative calcium binding protein) (cDNA clone:J013036L21, full insert sequence) (cDNA clone:J013052J08, full insert sequence) Q652U5,Q0DD57,Q652U8 Q652U5_ORYSJ,Q0DD57_ORYSJ,Q652U8_ORYSJ Os06g0254600 Os06g0254600 OSNPB_060254600 P0046H10.40 P0592E11.10,Os06g0254300 Os06g0254300 OSNPB_060254300,P0046H10.37-1 Os06g0254300 P0592E11.7-1 OSNPB_060254300 ENOG411DZZX BRM Q6EVK6 BRM_ARATH ATP-dependent helicase BRM (EC 3.6.4.12) (Protein BRAHMA) (AtBRM) (Protein CHROMATIN REMODELING 2) (AtCHR2) DISRUPTION PHENOTYPE: Sterility. Reduced heat stress (HS) memory associated with a premature decline of expression of HSA32, HSP18.2, HSP21, HSP22 and HSP101 after HS. The double mutant brm-1 fgt1-1 exhibits retarted seedling development resulting in reduced development and delayed leaf initiation, as well as delayed flowering time. {ECO:0000269|PubMed:27680998}. Incompletely penetrant zygotic embryo lethality. In heterozygotes more than 20% of seeds are arrested at an early developmental stage. A percentage of ovules in the siliques have enlarged integument cells and no visible embryos or embryos arrested at a very early stage.,Smaller than wt plants slow growing with downwards curled leaves. Flowers fail to open at maturity and exhibit organ fusions. Roots are significantly shorter than wt.,Completely sterile with homeotic transformations in the second and thried floral whorls. Slow growth delayed development and a dramatic reduction in plant size. Rosette and cauline leaves are small and curled downwards as well as coiled in the proximodistal axes both under short and long day conditions. Root development is strongly impaired. Late flowering under both SD and LD conditions with less leaves than WT. Some mutants never flower. Maintenance of the inflorescence shoot meristem is impaired.,Embryo lethal embryos arrest at early heart stage.,Ectopic expression of seed storage proteins in leaves.,Cup-shaped seedlings form with high frequency. Less frequently fusions of one cotyledon margin are observed. Male and female gametophyte defective; Homozygotes are viable: Dwarf; Slow growth; Abnormal leaf, root and flower morphology; Completely sterile-J. Reyes-2006 FUNCTION: ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes. The association of BRM with its target genes requires REF6 (PubMed:27111034). Necessary to acquire heat stress (HS) memory, by globally binding to HS memory genes (PubMed:27680998). {ECO:0000269|PubMed:16845477, ECO:0000269|PubMed:17293567, ECO:0000269|PubMed:18508955, ECO:0000269|PubMed:27111034, ECO:0000269|PubMed:27680998}. MISCELLANEOUS: Was previously split between At2g46010 and At2g46020. R-ATH-1266695;R-ATH-3247509; 3.6.4.12 245469 ATP-dependent helicase BRM (EC 3.6.4.12) (Protein BRAHMA) (AtBRM) (Protein CHROMATIN REMODELING 2) (AtCHR2) cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; helicase activity [GO:0004386]; ATP-dependent chromatin remodeling [GO:0043044]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275]; organ boundary specification between lateral organs and the meristem [GO:0010199]; positive regulation of cellular response to heat [GO:1900036]; regulation of gene expression, epigenetic [GO:0040029]; regulation of production of miRNAs involved in gene silencing by miRNA [GO:1903798]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in inflorescences and leaves. Low expression in siliques, roots and seedlings. Detected in shoot apical meristem, root meristem, vascular tissue of developing leaves, petals, stamens filaments, anthers and carpels. {ECO:0000269|PubMed:15371304}. locus:2062999; AT2G46020 ATP-dependent helicase Os02g0114033 protein (Fragment),Os02g0114000 protein (Fragment) A0A0P0VDV3,A0A0N7KEK0 A0A0P0VDV3_ORYSJ,A0A0N7KEK0_ORYSJ Os02g0114033 OSNPB_020114033,Os02g0114000 OSNPB_020114000 ENOG411DZZZ ORC4 Q6EWX1,F4IM82 ORC4_ARATH,F4IM82_ARATH Origin of replication complex subunit 4 (AtORC4),Origin of replication complex subunit 4 FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. {ECO:0000250|UniProtKB:O43929}.,FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. {ECO:0000256|PIRNR:PIRNR007858}. R-ATH-68616;R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962;R-ATH-69298; 47032,47892 Origin of replication complex subunit 4 (AtORC4),Origin of replication complex subunit 4 nuclear origin of replication recognition complex [GO:0005664]; ATP binding [GO:0005524]; DNA replication origin binding [GO:0003688]; DNA replication initiation [GO:0006270],nucleus [GO:0005634]; origin recognition complex [GO:0000808]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA replication [GO:0006260]; response to sucrose [GO:0009744] TISSUE SPECIFICITY: Follow a cell-cycle regulation with a peak at the G1/S-phase (PubMed:16179646). Isoform AtORC4a is expressed at low levels ubiquitously (PubMed:15358564). Isoform AtORC4b is mostly expressed in siliques, flowers and flower buds, and, to a lower exent, in roots, leaves and stems (PubMed:16179646, PubMed:15358564). {ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}. locus:2045745; AT2G01120 origin recognition complex subunit Origin of replication complex subunit 4 (OsORC4) Q5N8Q4 ORC4_ORYSJ ORC4 LOC_Os01g49010 Os01g0683400 OsJ_03032 P0445E10.9 FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. {ECO:0000250|UniProtKB:O43929}. ENOG411DZZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Solute carrier family 25 member Os01g0329400 protein (Putative mitochondrial carrier protein),Os01g0329400 protein (Fragment) Q5ZDR4,A0A0P0V260 Q5ZDR4_ORYSJ,A0A0P0V260_ORYSJ Os01g0329400 OsJ_01570 OSNPB_010329400 P0554D10.15,Os01g0329400 OSNPB_010329400 ENOG411DZZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os07g0541600 protein (cDNA clone:002-112-D06, full insert sequence),Os04g0354200 protein,Os02g0623000 protein,Os04g0641500 protein,Os07g0541600 protein (Fragment),Os07g0504400 protein,Os01g0849800 protein,Os04g0641550 protein,Os11g0274600 protein,Os01g0295100 protein,Os11g0632001 protein,Os05g0447900 protein,Os10g0338300 protein B7E9R9,A0A0P0W939,A0A0P0VM16,A0A0P0WFM7,A0A0P0X7A9,A0A0P0X6C4,A0A0P0VAC7,A0A0P0WFD5,A0A0N7KSR8,A0A0P0V1C5,A0A0P0Y4Q0,A0A0P0WMZ6,A0A0P0XTL0 B7E9R9_ORYSJ,A0A0P0W939_ORYSJ,A0A0P0VM16_ORYSJ,A0A0P0WFM7_ORYSJ,A0A0P0X7A9_ORYSJ,A0A0P0X6C4_ORYSJ,A0A0P0VAC7_ORYSJ,A0A0P0WFD5_ORYSJ,A0A0N7KSR8_ORYSJ,A0A0P0V1C5_ORYSJ,A0A0P0Y4Q0_ORYSJ,A0A0P0WMZ6_ORYSJ,A0A0P0XTL0_ORYSJ Os07g0541600 OSNPB_070541600,Os04g0354200 OSNPB_040354200,Os02g0623000 OSNPB_020623000,Os04g0641500 OSNPB_040641500,Os07g0504400 OSNPB_070504400,Os01g0849800 OSNPB_010849800,Os04g0641550 OSNPB_040641550,Os11g0274600 OSNPB_110274600,Os01g0295100 OSNPB_010295100,Os11g0632001 OSNPB_110632001,Os05g0447900 OSNPB_050447900,Os10g0338300 OSNPB_100338300 ENOG411DZZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DZZD RGP5 Q9FFD2 RGP5_ARATH Probable UDP-arabinopyranose mutase 5 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 5) (AtRGP5) (UDP-L-arabinose mutase 5) FUNCTION: Probable UDP-L-arabinose mutase involved in the biosynthesis of cell wall non-cellulosic polysaccharides. {ECO:0000250|UniProtKB:Q9SRT9}. ARA:AT5G16510-MONOMER; 5.4.99.30 38585 Probable UDP-arabinopyranose mutase 5 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 5) (AtRGP5) (UDP-L-arabinose mutase 5) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plasmodesma [GO:0009506]; intramolecular transferase activity [GO:0016866]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall biogenesis [GO:0009832]; response to salt stress [GO:0009651]; UDP-L-arabinose metabolic process [GO:0033356] TISSUE SPECIFICITY: Widely expressed at low levels. {ECO:0000269|PubMed:21478444}. locus:2171362; AT5G16510 UDP-arabinopyranose mutase Probable inactive UDP-arabinopyranose mutase 2 (OsUAM2) (Reversibly glycosylated polypeptide 2) (UDP-L-arabinose mutase 2) Q7FAY6 RGP2_ORYSJ UAM2 RGP2 Os04g0660400 LOC_Os04g56520 OSJNBa0015K02.13 FUNCTION: Probable inactive UDP-L-arabinose mutase. Inactive in vitro, but associates with UAM1 and UAM3. {ECO:0000269|PubMed:12011358, ECO:0000269|PubMed:17182701}. ENOG411DZZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Os07g0241800 protein (Putative UDP-glucosyltransferase),Os07g0243000 protein Q7XI34,A0A0P0X4K8 Q7XI34_ORYSJ,A0A0P0X4K8_ORYSJ P0418E08.117 Os07g0241800 OsJ_23669 OSNPB_070241800,Os07g0243000 OSNPB_070243000 ENOG411DZZF ECH Q8LEK2,A0A1P8ANI1 TVP23_ARATH,A0A1P8ANI1_ARATH Golgi apparatus membrane protein-like protein ECHIDNA,Golgi apparatus membrane protein TVP23 DISRUPTION PHENOTYPE: Severe size reduction of all organs. {ECO:0000269|PubMed:21512130}. Smaller and paler than wild-type plants. Reduction in both chlorophyll a and chlorophyll b. Impaired photosynthesis. FUNCTION: Mediates trans-Golgi-network trafficking and cell elongation. Required for keeping the appropriate balance between secretory trafficking and vacuolar targeting of a subset of proteins. {ECO:0000269|PubMed:21512130}.,FUNCTION: Golgi membrane protein involved in vesicular trafficking. {ECO:0000256|RuleBase:RU361206}. 21238,15246 Golgi apparatus membrane protein-like protein ECHIDNA,Golgi apparatus membrane protein TVP23 early endosome membrane [GO:0031901]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of Golgi membrane [GO:0030173]; trans-Golgi network [GO:0005802]; Golgi organization [GO:0007030]; protein secretion [GO:0009306]; unidimensional cell growth [GO:0009826]; vesicle-mediated transport [GO:0016192],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021] locus:2203023; AT1G09330 Eukaryotic protein of unknown function (DUF846) Golgi apparatus membrane protein TVP23 Q5ZCZ5,Q5W723 Q5ZCZ5_ORYSJ,Q5W723_ORYSJ Os01g0331900 OsJ_01580 OSNPB_010331900 P0489E06.36,Os05g0159100 OSJNBa0017J22.7 OSNPB_050159100 FUNCTION: Golgi membrane protein involved in vesicular trafficking. {ECO:0000256|RuleBase:RU361206}. ENOG411DZZG F4JQS2 F4JQS2_ARATH Pectin lyase-like superfamily protein 45966 Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2141877; AT4G18180 Glycosyl hydrolases family 28 Os08g0327200 protein (Putative polygalacturonase) (cDNA clone:J023027O10, full insert sequence) Q6Z8X3 Q6Z8X3_ORYSJ Os08g0327200 OSNPB_080327200 P0670E08.10 ENOG411DZZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione Os09g0467200 protein (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU17) (cDNA clone:001-002-F11, full insert sequence) (cDNA clone:001-040-D11, full insert sequence) (cDNA clone:J013026J15, full insert sequence) Q93WY5 Q93WY5_ORYSJ Os09g0467200 OJ1005_D12.39 OsJ_29684 OSNPB_090467200 P0676H02.1 ENOG411DZZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENT Os10g0436850 protein A0A0P0XUK0 A0A0P0XUK0_ORYSJ Os10g0436850 OSNPB_100436850 ENOG411DZZM O22164 O22164_ARATH Expressed protein (Replicase polyprotein 1ab protein) (Uncharacterized protein unannotated coding sequence from BAC T13E15) 28070 Expressed protein (Replicase polyprotein 1ab protein) (Uncharacterized protein unannotated coding sequence from BAC T13E15) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plastid [GO:0009536] locus:2054972; AT2G44870 NA Os10g0569000 protein (Fragment) A0A0P0XXY9 A0A0P0XXY9_ORYSJ Os10g0569000 OSNPB_100569000 ENOG411DZZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411DZZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prolyl oligopeptidase family Os08g0487900 protein Q6ZCV6 Q6ZCV6_ORYSJ Os08g0487900 Os08g0487900 OsJ_27737 OSNPB_080487900 P0028A08.22 ENOG411DZZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transmembrane amino acid transporter protein Amino acid transporter protein-like (Os01g0597400 protein),Amino acid transporter-like (Os01g0586500 protein),Os06g0630800 protein,Os01g0586300 protein,Os05g0364700 protein,Os01g0585900 protein,Os01g0586100 protein Q8LQU5,Q94D33,Q67IV8,A0A0N7KD84,A0A0P0WLD9,A0A0P0V4L2,A0A0P0V4L1 Q8LQU5_ORYSJ,Q94D33_ORYSJ,Q67IV8_ORYSJ,A0A0N7KD84_ORYSJ,A0A0P0WLD9_ORYSJ,A0A0P0V4L2_ORYSJ,A0A0P0V4L1_ORYSJ Os01g0597400 B1103C09.42 OsJ_02474 OSNPB_010597400,Os01g0586500 OsJ_02390 OSNPB_010586500 P0700A11.3 P0712E02.29,OSJNBa0048L03.29 Os06g0630800 OSNPB_060630800,Os01g0586300 OSNPB_010586300,Os05g0364700 OSNPB_050364700,Os01g0585900 OSNPB_010585900,Os01g0586100 OSNPB_010586100 ENOG411DZZ5 FLXL2 Q84TD8 FLXL2_ARATH Protein FLX-like 2 (AtFLXL2) DISRUPTION PHENOTYPE: No suppression of FRI activity. {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. FUNCTION: Has no transcriptional activation activity. {ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. 39742 Protein FLX-like 2 (AtFLXL2) cell differentiation [GO:0030154]; flower development [GO:0009908] locus:2033681; AT1G67170 NA Os02g0192100 protein A0A0P0VFT9 A0A0P0VFT9_ORYSJ Os02g0192100 OSNPB_020192100 ENOG411DZZ6 Q9XIN8 FB119_ARATH F-box protein At2g27310 38605 F-box protein At2g27310 locus:2039585; AT2G27310 F-box protein NA NA NA NA NA NA NA ENOG411DZZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF579 Cdc2 protein kinases-like (Os06g0687600 protein),Os02g0158500 protein Q653F8,A0A0P0VFA5 Q653F8_ORYSJ,A0A0P0VFA5_ORYSJ Os06g0687600 OSNPB_060687600 P0623A10.29 P0661G04.2,Os02g0158500 OSNPB_020158500 ENOG411EJB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EJBH T18N14.130 Q9SCT3,Q3EAL8 Q9SCT3_ARATH,Q3EAL8_ARATH Uncharacterized protein At3g51750 (Uncharacterized protein T18N14.130),Uncharacterized protein 12160,12031 Uncharacterized protein At3g51750 (Uncharacterized protein T18N14.130),Uncharacterized protein locus:2098277; AT3G51750 NA NA NA NA NA NA NA NA ENOG411DZZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HRDC domain 3'-5' exonuclease family protein, expressed (Os03g0157800 protein) (cDNA clone:J013104L22, full insert sequence),Os03g0157800 protein Q10RJ0,A0A0P0VTB0 Q10RJ0_ORYSJ,A0A0P0VTB0_ORYSJ LOC_Os03g06190 Os03g0157800 OsJ_09469 OSNPB_030157800,Os03g0157800 OSNPB_030157800 ENOG411DQ4Y DRB3 Q9LJF5,A0A1I9LSR8 DRB3_ARATH,A0A1I9LSR8_ARATH Double-stranded RNA-binding protein 3 (dsRNA-binding protein 3) (AtDRB3),DsRNA-binding protein 3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18625233}. FUNCTION: Binds double-stranded RNA. {ECO:0000250}. 40074,33894 Double-stranded RNA-binding protein 3 (dsRNA-binding protein 3) (AtDRB3),DsRNA-binding protein 3 RNA binding [GO:0003723] locus:2829928; AT3G26932 dsRNA-binding protein Double-stranded RNA-binding protein 5 (dsRNA-binding protein 2) (OsDRB2) (dsRNA-binding protein 5) B7E321 DRB5_ORYSJ DRB5 DRB2 Os09g0508500 LOC_Os09g33460 FUNCTION: Binds double-stranded RNA. {ECO:0000250}. ENOG411DQ4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os06g0670300 protein,Os02g0168200 protein Q653M8,Q6H4V0 Q653M8_ORYSJ,Q6H4V0_ORYSJ Os06g0670300 OSNPB_060670300 P0485A07.2 P0686E06.38,Os02g0168200 OSJNBa0085K21.53 OSNPB_020168200 P0669G09.7 ENOG411DQ4Z Q9C976,Q9XI20,A0A1P8AP00,A0A1P8ANY5,A0A1P8ANZ0,F4IEK5 Q9C976_ARATH,Q9XI20_ARATH,A0A1P8AP00_ARATH,A0A1P8ANY5_ARATH,A0A1P8ANZ0_ARATH,F4IEK5_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g80280) (Uncharacterized protein F5I6.3),Alpha/beta-Hydrolases superfamily protein (F9L1.44 protein) (Uncharacterized protein At1g15490),Alpha/beta-Hydrolases superfamily protein 71106,71282,54483,63194,61351,70294 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At1g80280) (Uncharacterized protein F5I6.3),Alpha/beta-Hydrolases superfamily protein (F9L1.44 protein) (Uncharacterized protein At1g15490),Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2034220;,locus:2037828;,locus:2011476; AT1G80280,AT1G15490,AT1G52750 hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411DQ4U PAP1,PAP24,PAP27 Q9LMX4,Q8H1R2,Q5MAU8,A0A1P8BA48 PPA1_ARATH,PPA24_ARATH,PPA27_ARATH,A0A1P8BA48_ARATH Probable inactive purple acid phosphatase 1,Probable inactive purple acid phosphatase 24,Probable inactive purple acid phosphatase 27,Purple acid phosphatase (EC 3.1.3.2) ARA:GQT-1198-MONOMER;,ARA:GQT-388-MONOMER;,ARA:GQT-2709-MONOMER; 3.1.3.2 68242,69126,68897,61099 Probable inactive purple acid phosphatase 1,Probable inactive purple acid phosphatase 24,Probable inactive purple acid phosphatase 27,Purple acid phosphatase (EC 3.1.3.2) extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872],cell wall [GO:0005618]; extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872],acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}.,TISSUE SPECIFICITY: Specifically expressed in flowers. {ECO:0000269|PubMed:16244908}. locus:2023870;,locus:2117353;,locus:2177547; AT1G13750,AT4G24890,AT5G50400 inactive purple acid phosphatase Purple acid phosphatase (EC 3.1.3.2),Purple acid phosphatase (EC 3.1.3.2) (Fragment),Os08g0531000 protein (Fragment) Q10Q09,Q0J0L3,Q6ZI95,A0A0P0XNU8,A0A0N7KQ70,A0A0P0XNW6 Q10Q09_ORYSJ,Q0J0L3_ORYSJ,Q6ZI95_ORYSJ,A0A0P0XNU8_ORYSJ,A0A0N7KQ70_ORYSJ,A0A0P0XNW6_ORYSJ Os03g0214000 LOC_Os03g11530 Os03g0214000 OSNPB_030214000,Os09g0506000 Os09g0506000 OSNPB_090506000,NPP1 Os08g0531000 OJ1770_H02.40 OJ1789_C07.19 OsJ_28052 OSNPB_080531000,Os09g0506000 OSNPB_090506000,Os08g0531000 OSNPB_080531000 ENOG411DQ4T GT16,GT20 Q9SH31,Q9FHD8 GT16_ARATH,GT20_ARATH Xyloglucan-specific galacturonosyltransferase 1 (EC 2.4.1.-) (Glycosyltransferase 16) (Protein ROOT HAIR SPECIFIC 8) (Protein exostosin),Probable xyloglucan galactosyltransferase GT20 (EC 2.4.1.-) (Glycosyltransferase 20) (AtGT20) DISRUPTION PHENOTYPE: Lacks acidic xyloglucan and has short root hairs. {ECO:0000269|PubMed:23175743}. FUNCTION: Xyloglucan-specific galacturonosyltransferase that forms the beta-D-galactosyluronic acid-(1->2)-alpha-D-xylosyl linkage. Required for root hair development probably by providing important acidic xyloglucans. {ECO:0000269|PubMed:23175743}.,FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 76562,65208 Xyloglucan-specific galacturonosyltransferase 1 (EC 2.4.1.-) (Glycosyltransferase 16) (Protein ROOT HAIR SPECIFIC 8) (Protein exostosin),Probable xyloglucan galactosyltransferase GT20 (EC 2.4.1.-) (Glycosyltransferase 20) (AtGT20) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall biogenesis [GO:0042546]; polysaccharide biosynthetic process [GO:0000271]; root hair elongation [GO:0048767],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Root hair specific (PubMed:19448035, PubMed:22253603). Expressed in roots and young leaves (PubMed:15020758). {ECO:0000269|PubMed:15020758, ECO:0000269|PubMed:19448035, ECO:0000269|PubMed:22253603}.,TISSUE SPECIFICITY: Expressed in hydathodes. {ECO:0000269|PubMed:15020758}. locus:2031346;,locus:2155110; AT1G63450,AT5G41250 Galactosyltransferase-like protein NA NA NA NA NA NA NA ENOG411DQ4W ELF5A-2,MED10B,MED10A Q93VP3,F4HPA7,Q9FHZ2,Q8VZL7,F4HPA5 IF5A2_ARATH,MD10B_ARATH,MD10A_ARATH,Q8VZL7_ARATH,F4HPA5_ARATH Eukaryotic translation initiation factor 5A-2 (AtELF5A-2) (eIF-5A-2) (Protein FUMONISIN B1-RESISTANT 12),Mediator of RNA polymerase II transcription subunit 10b,Mediator of RNA polymerase II transcription subunit 10a,Prefoldin chaperone subunit family protein (Uncharacterized protein At1g26660),Prefoldin chaperone subunit family protein DISRUPTION PHENOTYPE: Severe defects in plant growth and development. Delayed dark-induced leaf senescence. Dwarfism, defective sporogenesis and shorter primary roots. Impaired protoxylem development. {ECO:0000269|PubMed:17513484, ECO:0000269|PubMed:24163315}. Increased resistance to Pseudomonas syringae pv tomato DC3000 colonization. 72hrs post-innoculation CFU/leaf disc values were >94% lower tahn WT. Inhibition of infection is correlated with curtailed chlorosis and there fore programmed cell death. Morphologically indistinguishable to WT.,Increased leaf chlorosis in response to Pseudomonas syringae pv tomato DC3000 innoculation. Severely stunted growth. Many plants do not produce seed. Stunted plants have yellow curled leaves purple cotyledons and abnormal flower morphology. Severity of phenotype is directly correlated with level of overexpression. Dwarf; Short roots; Few, small rosette and cauline leaves; Few flowers; Abnormal flower morphology; Completely sterile-J. Zuo-2007 FUNCTION: The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Regulates cytokinin-mediated root protoxylem specification and represses secifically the expression of AHP6. Regulates the induction of programmed cell death caused by infection with virulent pathogen. {ECO:0000269|PubMed:17513484, ECO:0000269|PubMed:18633122, ECO:0000269|PubMed:24163315}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors. {ECO:0000305|PubMed:17560376, ECO:0000305|PubMed:22021418}. R-ATH-204626; 17140,20913,20727,17765,20539 Eukaryotic translation initiation factor 5A-2 (AtELF5A-2) (eIF-5A-2) (Protein FUMONISIN B1-RESISTANT 12),Mediator of RNA polymerase II transcription subunit 10b,Mediator of RNA polymerase II transcription subunit 10a,Prefoldin chaperone subunit family protein (Uncharacterized protein At1g26660),Prefoldin chaperone subunit family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ribosome binding [GO:0043022]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743]; defense response to bacterium [GO:0042742]; host programmed cell death induced by symbiont [GO:0034050]; positive regulation of translational elongation [GO:0045901]; positive regulation of translational termination [GO:0045905]; programmed cell death [GO:0012501]; response to bacterium [GO:0009617]; response to cadmium ion [GO:0046686]; response to wounding [GO:0009611]; translational frameshifting [GO:0006452]; translational initiation [GO:0006413],core mediator complex [GO:0070847]; mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription cofactor activity [GO:0001104] TISSUE SPECIFICITY: Ubiquitous. In roots, expressed mostly inside the stele of the mature zone. {ECO:0000269|PubMed:17513484}. locus:2200570;,locus:505006147;,locus:2165680;,locus:2200605; AT1G26630,AT1G26665,AT5G41910,AT1G26660 The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond NA NA NA NA NA NA NA ENOG411DQ4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: CW-type Zinc Finger Os05g0371100 protein A0A0P0WLF5 A0A0P0WLF5_ORYSJ Os05g0371100 OSNPB_050371100 ENOG411DQ4Q 4CLL7 Q9M0X9 4CLL7_ARATH 4-coumarate--CoA ligase-like 7 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 6) (At4CL6) FUNCTION: Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. {ECO:0000269|PubMed:15677481}. ARA:AT4G05160-MONOMER; 6.2.1.- 59850 4-coumarate--CoA ligase-like 7 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 6) (At4CL6) peroxisome [GO:0005777]; ATP binding [GO:0005524]; fatty-acyl-CoA synthase activity [GO:0004321]; ligase activity [GO:0016874]; jasmonic acid biosynthetic process [GO:0009695]; oxylipin biosynthetic process [GO:0031408] locus:2115673; AT4G05160 4-coumarate--CoA ligase-like 4-coumarate--CoA ligase-like 1 (EC 6.2.1.-),Os11g0205400 protein Q0DV32,A0A0P0Y086 4CLL1_ORYSJ,A0A0P0Y086_ORYSJ 4CLL1 Os03g0152400 LOC_Os03g05780,Os11g0205400 OSNPB_110205400 ENOG411DQ4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipase d Os06g0649900 protein (Putative phospholipase D) Q67UR5 Q67UR5_ORYSJ Os06g0649900 OsJ_22174 OSNPB_060649900 P0453H04.15 ENOG411DQ4S PAT1,SCL5 Q9LDL7,Q8H125,A0A1P8AW83,A0A1P8AW90 PAT1_ARATH,SCL5_ARATH,A0A1P8AW83_ARATH,A0A1P8AW90_ARATH Scarecrow-like transcription factor PAT1 (GRAS family protein 29) (AtGRAS-29) (Protein PHYTOCHROME A SIGNAL TRANSDUCTION 1),Scarecrow-like protein 5 (AtSCL5) (GRAS family protein 6) (AtGRAS-6),Scarecrow-like 5 DISRUPTION PHENOTYPE: Plants display reduced response to far-red (FR) light. Seedlings develop long hypocotyls, unfolded cotyledons, no significant anthocyanin accumulation, and greening after FR light. {ECO:0000269|PubMed:10817761}. No aberrant root phenotype and no resistance to paclobutrazol (1-100 μM).,Seedlings grown under far-red (but not red) light have elongated hypocotyls and resistance to FR-induced killing compared to wild-type seedlings.,Under FR-light the cotyledons are unfolded a partially unfolded hook no significant anthocyanin accumulation and greening are observed.,Wild-type hypocotyl length under red blue and white light as well as in the dark. FUNCTION: Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.,FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 55290,66641,58627,67170 Scarecrow-like transcription factor PAT1 (GRAS family protein 29) (AtGRAS-29) (Protein PHYTOCHROME A SIGNAL TRANSDUCTION 1),Scarecrow-like protein 5 (AtSCL5) (GRAS family protein 6) (AtGRAS-6),Scarecrow-like 5 cytoplasm [GO:0005737]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; signal transducer activity [GO:0004871]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; photomorphogenesis [GO:0009640]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. locus:2164783;,locus:2008076; AT5G48150,AT1G50600 Chitin-inducible gibberellin-responsive protein Chitin-inducible gibberellin-responsive protein 2,Chitin-inducible gibberellin-responsive protein 1,Os07g0583600 protein (Fragment) Q8GVE1,Q69VG1,A0A0P0X8L4 CIGR2_ORYSJ,CIGR1_ORYSJ,A0A0P0X8L4_ORYSJ CIGR2 Os07g0583600 LOC_Os07g39470 OJ1127_E01.113 OsJ_24900,CIGR1 Os07g0545800 LOC_Os07g36170 OsJ_24639 P0006G05.102,Os07g0583600 OSNPB_070583600 FUNCTION: May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. MISCELLANEOUS: Induction by oligosaccharide elicitor is independent of de novo protein synthesis. ENOG411DQ4R MED23 F4I4P3,A0A1P8AUG4 MED23_ARATH,A0A1P8AUG4_ARATH Mediator of RNA polymerase II transcription subunit 23,Mediator of RNA polymerase II transcription subunit FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. 180096,178086 Mediator of RNA polymerase II transcription subunit 23,Mediator of RNA polymerase II transcription subunit mediator complex [GO:0016592]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2028040; AT1G23230 Mediator complex subunit 23 Os02g0732700 protein,Os02g0732700 protein (Fragment) Q6Z2J8,A0A0P0VP31,A0A0P0VPH8 Q6Z2J8_ORYSJ,A0A0P0VP31_ORYSJ,A0A0P0VPH8_ORYSJ Os02g0732700 OsJ_08276 OSNPB_020732700 P0643A10.26,Os02g0732700 OSNPB_020732700 ENOG411DQ4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0783100 protein (Putative PPR protein) Q8LQQ6 Q8LQQ6_ORYSJ Os01g0783100 Os01g0783100 B1100D10.34 OSNPB_010783100 ENOG411DQ4N LFY Q00958,A0A1P8BDB4 LFY_ARATH,A0A1P8BDB4_ARATH Protein LEAFY,Floral meristem identity control protein LEAFY (LFY) Enhanced meristem identity defect with respect to single lfy-10 mutant. More secondary inflorescences formed more bracts formed. No enhancement of floral homeotic defects of lfy-10.,lmi1-1 enhances meristem identity defects strong increase in number of secondary inflorescences and bracts compared with lfy-10/+. Increased branching; Flowers show some characteristics of secondary inflorescences; Flowers often subtended by leafy bracts-E. Meyerowitz-1992 FUNCTION: Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1. Is required subsequently for the transition of an inflorescence meristem into a floral meristem, by an immediate upstream regulation of the ABC classes of floral homeotic genes. Activates directly APETALA1, CAULIFLOWER and AGAMOUS, and indirectly APETALA3 and PISTILLATA with the cooperation of UFO. {ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9783581, ECO:0000269|Ref.6}. MISCELLANEOUS: Mutations in the LEAFY gene result in the complete transformation of the first few flowers into leaves with associated shoots. 46582,47100 Protein LEAFY,Floral meristem identity control protein LEAFY (LFY) nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; protein homodimerization activity [GO:0042803]; protein self-association [GO:0043621]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; floral meristem determinacy [GO:0010582]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; maintenance of inflorescence meristem identity [GO:0010077]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] DEVELOPMENTAL STAGE: Expressed at an early stage of floral initiation. TISSUE SPECIFICITY: Expressed uniformly throughout the young floral primordia. locus:2159208; AT5G61850 Transcription factor Probable transcription factor FL (RFL) Q0JAI1 FL_ORYSJ FL OSL Os04g0598300 LOC_Os04g51000 OsJ_16017 OSJNba0093F12.17 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DQ4I WAKL20 Q9LZM4 WAKLQ_ARATH Wall-associated receptor kinase-like 20 (EC 2.7.11.-) FUNCTION: Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. 2.7.11.- 72348 Wall-associated receptor kinase-like 20 (EC 2.7.11.-) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2185118; AT5G02070 wall-associated receptor kinase-like Os04g0598800 protein (Fragment),Os05g0318100 protein,Os04g0598600 protein (Fragment) Q0JAH8,B9FGM8,A0A0P0WE90 Q0JAH8_ORYSJ,B9FGM8_ORYSJ,A0A0P0WE90_ORYSJ Os04g0598800 Os04g0598800 OSNPB_040598800,Os05g0318100 OsJ_18043 OSNPB_050318100,Os04g0598600 OSNPB_040598600 ENOG411DQ4H TET10 F4I214,A0A1P8ANL3,A0A1P8ANM1 TET10_ARATH,A0A1P8ANL3_ARATH,A0A1P8ANM1_ARATH Tetraspanin-10,Tetraspanin10 FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000250}. 31919,24522,23873 Tetraspanin-10,Tetraspanin10 integral component of membrane [GO:0016021] locus:2038488; AT1G63260 Tetraspanin family Os10g0503600 protein (Putative senescence-associated protein) (Senescence-associated family protein, putative, expressed) (cDNA clone:J033148O13, full insert sequence) Q9FVY6 Q9FVY6_ORYSJ Os10g0503600 LOC_Os10g35980 Os10g0503600 OsJ_32081 OSJNBb0073N24.21 OSNPB_100503600 ENOG411DQ4K Q9SJV1,Q9SJV2,A0A1P8B1D1,F4IGK5 Q9SJV1_ARATH,Q9SJV2_ARATH,A0A1P8B1D1_ARATH,F4IGK5_ARATH At2g21260 (NAD(P)-linked oxidoreductase superfamily protein) (Putative NADPH dependent mannose 6-phosphate reductase),NAD(P)-linked oxidoreductase superfamily protein (Putative NADPH-dependent mannose 6-phosphate reductase),NAD(P)-linked oxidoreductase superfamily protein ARA:AT2G21260-MONOMER;,ARA:AT2G21250-MONOMER; R-ATH-156590;R-ATH-193144;R-ATH-193368;R-ATH-193775;R-ATH-193807;R-ATH-196108;R-ATH-2162123;R-ATH-5365859;R-ATH-5652227;R-ATH-5661270; 35019,35010,27289,26457 At2g21260 (NAD(P)-linked oxidoreductase superfamily protein) (Putative NADPH dependent mannose 6-phosphate reductase),NAD(P)-linked oxidoreductase superfamily protein (Putative NADPH-dependent mannose 6-phosphate reductase),NAD(P)-linked oxidoreductase superfamily protein oxidoreductase activity [GO:0016491],cytosol [GO:0005829]; oxidoreductase activity [GO:0016491]; response to cadmium ion [GO:0046686] locus:2050155;,locus:2050135; AT2G21260,AT2G21250 NADP-dependent D-sorbitol-6-phosphate Os02g0123500 protein (Putative NADPH-dependent mannose 6-phosphate reductase),Os02g0123500 protein Q6Z718,Q0E4D9 Q6Z718_ORYSJ,Q0E4D9_ORYSJ P0575F10.14 Os02g0123500 OSNPB_020123500,Os02g0123500 Os02g0123500 OSNPB_020123500 ENOG411DQ4J Q8S8Q2,Q9FL94,Q9LDF8 Q8S8Q2_ARATH,Q9FL94_ARATH,Q9LDF8_ARATH Expressed protein (Trypsin family protein) (Uncharacterized protein At2g35155),AT5G45030 protein (Gb|AAC61821.1) (Trypsin family protein),At3g12950 (Trypsin family protein) 63064,65850,60534 Expressed protein (Trypsin family protein) (Uncharacterized protein At2g35155),AT5G45030 protein (Gb|AAC61821.1) (Trypsin family protein),At3g12950 (Trypsin family protein) locus:505006292;,locus:2155317;,locus:2089255; AT2G35155,AT5G45030,AT3G12950 Peptidase trypsin-like serine and cysteine proteases Os04g0615000 protein (Fragment) A0A0P0WF43 A0A0P0WF43_ORYSJ Os04g0615000 OSNPB_040615000 ENOG411DQ4E ACO1 Q9ZUN4,A0A1P8B1D8 ACCO1_ARATH,A0A1P8B1D8_ARATH 1-aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1) (AtACO1) (EC 1.14.17.4),ACC oxidase 1 FUNCTION: Enzyme involved in the ethylene biosynthesis. May promote stem elongation by maximizing the extensibility cells, possibly by activating ethylene biosynthesis, in response to very-long-chain fatty acids (VLCFAs C20:0 to C30:0). {ECO:0000269|PubMed:17993622}. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 2/2. 1.14.17.4 35202,33549 1-aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1) (AtACO1) (EC 1.14.17.4),ACC oxidase 1 1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; L-ascorbic acid binding [GO:0031418]; metal ion binding [GO:0046872]; cellular response to fatty acid [GO:0071398]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; cellular response to potassium ion starvation [GO:0051365]; defense response [GO:0006952]; ethylene biosynthetic process [GO:0009693],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2050364; AT2G19590 1-aminocyclopropane-1-carboxylate oxidase Os06g0573900 protein (Fragment) A0A0P0WYH4 A0A0P0WYH4_ORYSJ Os06g0573900 OSNPB_060573900 ENOG411DQ4D S-ACP-DES5,FAB2,S-ACP-DES1,SSI2 Q9M879,O22832,Q9LF04,F4IS32 STAD5_ARATH,STAD7_ARATH,STAD1_ARATH,F4IS32_ARATH Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic (Stearoyl-ACP desaturase 5) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 5),Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic (Stearoyl-ACP desaturase 7) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 7) (Protein FATTY ACID BIOSYNTHESIS 2) (Protein SUPPRESSOR OF SA INSENSITIVITY 2) (AtSSI2),Stearoyl-[acyl-carrier-protein] 9-desaturase 1, chloroplastic (Stearoyl-ACP desaturase 1) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 1),Acyl-[acyl-carrier-protein] desaturase (EC 1.14.19.-) DISRUPTION PHENOTYPE: Increased level of stearate (18:0) and reduced level of oleic acid (18:1) in leaves. Spontaneous cell death, constitutive PR genes expression, accumulation of high levels of salicylic acid (SA), enhanced resistance to Pseudomonas syringae, Peronospora parasitica and Cucumber mosaic virus, and enhanced susceptibility to Botrytis cinerea. {ECO:0000269|PubMed:12232421}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17072561}. dwarf with crinkled leaves. conferred hyper-resistance to green peach aphid. Necrotic lesions; Resistant to Phytophthora parasitica-D. Klessig-2001 FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. {ECO:0000269|PubMed:17072561}.,FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. Required for the activation of certain jasmonic acid (JA)-mediated responses and the repression of the salicylic acid (SA) signaling pathway. {ECO:0000269|PubMed:11309146, ECO:0000269|PubMed:11481500, ECO:0000269|PubMed:14601670, ECO:0000269|PubMed:14615603, ECO:0000269|PubMed:15195945, ECO:0000269|PubMed:15828688}.,FUNCTION: Introduction of a cis double bond between carbons of the acyl chain. {ECO:0000256|RuleBase:RU000582}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT3G02630-MONOMER;,ARA:GQT-2646-MONOMER;,ARA:AT5G16240-MONOMER; 1.14.19.2; 1.14.19.2,1.14.19.- 45303,45693,45018,45651 Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic (Stearoyl-ACP desaturase 5) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 5),Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic (Stearoyl-ACP desaturase 7) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 7) (Protein FATTY ACID BIOSYNTHESIS 2) (Protein SUPPRESSOR OF SA INSENSITIVITY 2) (AtSSI2),Stearoyl-[acyl-carrier-protein] 9-desaturase 1, chloroplastic (Stearoyl-ACP desaturase 1) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 1),Acyl-[acyl-carrier-protein] desaturase (EC 1.14.19.-) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-[acp] desaturase activity [GO:0102786]; fatty acid biosynthetic process [GO:0006633],chloroplast stroma [GO:0009570]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-[acp] desaturase activity [GO:0102786]; defense response [GO:0006952]; fatty acid biosynthetic process [GO:0006633],chloroplast [GO:0009507]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-[acp] desaturase activity [GO:0102786]; fatty acid biosynthetic process [GO:0006633],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; plastid [GO:0009536]; acyl-[acyl-carrier-protein] desaturase activity [GO:0045300]; metal ion binding [GO:0046872]; stearoyl-CoA 9-desaturase activity [GO:0004768]; defense response to bacterium [GO:0042742]; defense response to insect [GO:0002213]; defense response to virus [GO:0051607]; fatty acid metabolic process [GO:0006631]; lipid biosynthetic process [GO:0008610]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; unsaturated fatty acid biosynthetic process [GO:0006636] TISSUE SPECIFICITY: Ubiquitously expressed with a preference in leaves, flowers and stems. {ECO:0000269|PubMed:17072561}.,TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:17072561}. locus:2076969;,locus:2181437;,locus:2043899; AT3G02630,AT2G43710,AT5G16240 Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic (Stearoyl-ACP desaturase 5) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 5),Stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic (Stearoyl-ACP desaturase 2) (EC 1.14.19.2) (Acyl-[acyl-carrier-protein] desaturase 2) (SSI2 homolog) (OsSSI2),Os01g0919900 protein,Os01g0919900 protein (Fragment) Q40731,Q8S059,A0A0N7KEB1,A0A0P0VC38 STAD5_ORYSJ,STAD2_ORYSJ,A0A0N7KEB1_ORYSJ,A0A0P0VC38_ORYSJ Os04g0379900 LOC_Os04g31070 OsJ_14516 OSJNBb0089B03.6,SSI2 Os01g0919900 LOC_Os01g69080 B1793G04.1 OsJ_04566 P0678F11.28,Os01g0919900 OSNPB_010919900 DISRUPTION PHENOTYPE: Increased level of stearate (18:0) and reduced level of oleic acid (18:1) in leaves. Spontaneous lesion formation in leaf blades, retarded growth, slight increase in endogenous free salicylic acid (SA) levels and SA/benzothiadiazole (BTH)-specific inducible genes. Enhanced resistance to the blast fungus Magnaporthe grisea and leaf-blight bacteria Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:19522564}. FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. {ECO:0000250|UniProtKB:P22337}.,FUNCTION: Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons 9 and 10 of the acyl chain. Required for the repression of the salicylic acid (SA) signaling pathway. {ECO:0000269|PubMed:19522564}. ENOG411DQ4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3537) Os04g0448000 protein A0A0P0WAX5 A0A0P0WAX5_ORYSJ Os04g0448000 OSNPB_040448000 ENOG411DQ4F RPS1 Q93VC7 RPS1_ARATH 30S ribosomal protein S1, chloroplastic (Plastid ribosomal protein S1) (PRPS1) DISRUPTION PHENOTYPE: Reduced plant size and pale green leaves. {ECO:0000269|PubMed:22570631, ECO:0000269|PubMed:22900828}. FUNCTION: Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs (PubMed:22900828). Involved in cellular heat stress response and required for heat tolerance. Required for transcriptional activation of HSFA2 and its target genes in response to heat stress. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes (PubMed:22570631). {ECO:0000269|PubMed:22570631, ECO:0000269|PubMed:22900828}. 45110 30S ribosomal protein S1, chloroplastic (Plastid ribosomal protein S1) (PRPS1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ribosome [GO:0005840]; thylakoid [GO:0009579]; mRNA binding [GO:0003729]; response to cytokinin [GO:0009735] locus:2145860; AT5G30510 ribosomal protein S1 Os03g0315800 protein (Fragment) Q0DSD6,A0A0P0VWS3 Q0DSD6_ORYSJ,A0A0P0VWS3_ORYSJ Os03g0315800 OSNPB_030315800 ENOG411DQ4A CDR1 Q6XBF8,Q9XIR2 CDR1_ARATH,Q9XIR2_ARATH Aspartic proteinase CDR1 (EC 3.4.23.-) (Protein CONSTITUTIVE DISEASE RESISTANCE 1),Eukaryotic aspartyl protease family protein (F13O11.13 protein) Dwarf phenotype.,Increased resistance to the virulent Pseudomonas syringae (both pathovars: tomato and maculicola) demonstrated by an absence of macroscopic lesions upon infection. Small lesions comprising one or a few dead cells persist in the mutant. FUNCTION: Involved in salicylic acid-dependent inducible resistance responses. May release an endogenous peptide elicitor required for the activation of inducible resistance mechanisms. Possesses protease activity in vitro. {ECO:0000269|PubMed:14765119}. MISCELLANEOUS: Gain-of-function mutant CDR1-D (T-DNA tagging) shows a dwarf phenotype with dark and curled leaves, constitutive expression of the pathogenesis-related genes PR1 and PR2, and resistance to virulent Pseudomonas syringae. {ECO:0000305|PubMed:14765119}. 3.4.23.- 46819,46340 Aspartic proteinase CDR1 (EC 3.4.23.-) (Protein CONSTITUTIVE DISEASE RESISTANCE 1),Eukaryotic aspartyl protease family protein (F13O11.13 protein) apoplast [GO:0048046]; aspartic-type endopeptidase activity [GO:0004190]; defense response to bacterium [GO:0042742]; protein catabolic process [GO:0030163]; regulation of hydrogen peroxide metabolic process [GO:0010310]; regulation of salicylic acid metabolic process [GO:0010337],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2145954;,locus:2010786; AT5G33340,AT1G64830 aspartic Os01g0178600 protein A0A0P0UZN0 A0A0P0UZN0_ORYSJ Os01g0178600 OSNPB_010178600 ENOG411DQ4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-type lectin S-receptor-like serine threonine-protein kinase SD2-5-like Os04g0303100 protein,Os06g0552000 protein (Putative S-domain receptor-like protein kinase),Os02g0234450 protein (Putative S-receptor kinase) B9FEC3,Q5Z932,Q6EUK6 B9FEC3_ORYSJ,Q5Z932_ORYSJ,Q6EUK6_ORYSJ Os04g0303100 OsJ_14199 OSNPB_040303100,Os06g0552000 OsJ_21654 OSNPB_060552000 P0427B07.4 P0659D09.56,Os02g0234450 OJ1145_E05.6 OsJ_06004 OSNPB_020234450 ENOG411DQ4B PCMP-E44 Q9ZQA1 PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730 56951 Pentatricopeptide repeat-containing protein At2g36730 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2040565; AT2G36730 Pentatricopeptide repeat-containing protein Os09g0412900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J033088H22, full insert sequence) (cDNA clone:J033111M02, full insert sequence) Q6ES36 Q6ES36_ORYSJ Os09g0412900 OJ1294_G06.38 OSNPB_090412900 P0643D11.13 ENOG411DQ49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-NAD kinase Putative NAD kinase 3 (EC 2.7.1.23),Probable NAD kinase 1 (EC 2.7.1.23),Os01g0957000 protein (Fragment),Os05g0388400 protein Q60E60,Q5JK52,A0A0P0VD66,A0A0P0WLR1 NADK3_ORYSJ,NADK1_ORYSJ,A0A0P0VD66_ORYSJ,A0A0P0WLR1_ORYSJ Os05g0388400 LOC_Os05g32210 OSJNBa0073E05.16,Os01g0957000 LOC_Os01g72690 OJ1294_F06.11,Os01g0957000 OSNPB_010957000,Os05g0388400 OSNPB_050388400 ENOG411DQ48 Q8RWX2,B3H6T0,A0A1P8B0Z8,F4IST2,F4IST0,F4IST1 Q8RWX2_ARATH,B3H6T0_ARATH,A0A1P8B0Z8_ARATH,F4IST2_ARATH,F4IST0_ARATH,F4IST1_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g32170),AT2G32160 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein R-ATH-70921; 57712,53021,52461,65350,51422,47317 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At2g32170),AT2G32160 protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168],S-adenosylmethionine-dependent methyltransferase activity [GO:0008757] locus:2045547;,locus:2045542; AT2G32170,AT2G32160 N2227-like protein Os05g0511300 protein (cDNA clone:J023064E24, full insert sequence) Q6L536 Q6L536_ORYSJ Os05g0511300 OJ1005_B11.9 OSNPB_050511300 ENOG411DQ45 RLP57,T16K5.100,RLP44 Q9FH86,Q9M2Y3,A0A1I9LP15 Q9FH86_ARATH,Q9M2Y3_ARATH,A0A1I9LP15_ARATH At5g65830 (Receptor like protein 57) (Similarity to receptor protein kinase-like protein) (Uncharacterized protein At5g65830),At3g49750 (Receptor like protein 44) (Uncharacterized protein At3g49750) (Uncharacterized protein T16K5.100),Receptor like protein 44 30879,29993,20615 At5g65830 (Receptor like protein 57) (Similarity to receptor protein kinase-like protein) (Uncharacterized protein At5g65830),At3g49750 (Receptor like protein 44) (Uncharacterized protein At3g49750) (Uncharacterized protein T16K5.100),Receptor like protein 44 integral component of membrane [GO:0016021]; kinase activity [GO:0016301],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2156218;,locus:2097305; AT5G65830,AT3G49750 inactive receptor kinase At1g27190 Os09g0131200 protein (Fragment) Q0J3C8 Q0J3C8_ORYSJ Os09g0131200 OSNPB_090131200 ENOG411DQ44 DTX35,DTX34 F4JTB3,F4JH46,A0A1P8B7C3,F4JTB2 DTX35_ARATH,DTX34_ARATH,A0A1P8B7C3_ARATH,F4JTB2_ARATH Protein DETOXIFICATION 35 (AtDTX35) (Multidrug and toxic compound extrusion protein 35) (MATE protein 35) (Protein DETOXIFYING EFFLUX CARRIER 35) (Protein DTX5) (Protein FLOWER FLAVONOID TRANSPORTER) (Protein FFT),Protein DETOXIFICATION 34 (AtDTX34) (Multidrug and toxic compound extrusion protein 34) (MATE protein 34),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) DISRUPTION PHENOTYPE: Affected flavonoid levels in the plant. Altered root growth, seed development and germination, and pollen development and release (PubMed:19995827). Enhanced growth and early flowering in comparison to the wild type (PubMed:20505354). {ECO:0000269|PubMed:19995827, ECO:0000269|PubMed:20505354}. abnormal germination rates and seed morphology faster growth rate and development reduced fertility due to defects in anther dehiscence and fewer pollen altered flavonoid metabolism compared to wild type Altered germination rate; Increased root growth rate; Abnormal seed coat; Reduced fertility; Abnormal flavonoid levels-B. Glover-2009 FUNCTION: Multidrug and toxin efflux transporter involved in flavonoid metabolism. Required for proper reproductive development. {ECO:0000269|PubMed:19995827}. R-ATH-425366; 53225,59045,51196,56220 Protein DETOXIFICATION 35 (AtDTX35) (Multidrug and toxic compound extrusion protein 35) (MATE protein 35) (Protein DETOXIFYING EFFLUX CARRIER 35) (Protein DTX5) (Protein FLOWER FLAVONOID TRANSPORTER) (Protein FFT),Protein DETOXIFICATION 34 (AtDTX34) (Multidrug and toxic compound extrusion protein 34) (MATE protein 34),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; flavonoid biosynthetic process [GO:0009813],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; anther dehiscence [GO:0009901]; drug transmembrane transport [GO:0006855]; flavonoid metabolic process [GO:0009812]; pollen development [GO:0009555] TISSUE SPECIFICITY: Highly expressed in inflorescence tissues, especially in floral epidermal guard cells including those of the anthers, stigma, siliques and nectaries. Also detected in the meristematic zone of the root apex and in the elongation zone through to the fully expanded cells of the differentiation zone. {ECO:0000269|PubMed:19995827}. locus:2126036;,locus:2131401; AT4G25640,AT4G00350 protein TRANSPARENT TESTA Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),Os08g0562800 protein (Putative ripening regulated protein DDTFR18) Q6ZBX6,Q6ZBX7,A0A0P0VRD2 Q6ZBX6_ORYSJ,Q6ZBX7_ORYSJ,A0A0P0VRD2_ORYSJ P0543D10.17-2 Os08g0562800 OSNPB_080562800,P0543D10.17-1 Os08g0562800 OSNPB_080562800,Os02g0821600 OSNPB_020821600 ENOG411DQ47 MPA24.11 Q1JPM1 Q1JPM1_ARATH At5g65760 (Lysosomal Pro-X carboxypeptidase) (Serine carboxypeptidase S28 family protein) R-ATH-6798695; 58573 At5g65760 (Lysosomal Pro-X carboxypeptidase) (Serine carboxypeptidase S28 family protein) chloroplast [GO:0009507]; vacuole [GO:0005773]; carboxypeptidase activity [GO:0004180]; dipeptidyl-peptidase activity [GO:0008239]; serine-type peptidase activity [GO:0008236]; proteolysis [GO:0006508] locus:2169945; AT5G65760 Lysosomal Pro-X Os01g0767100 protein (Putative prolylcarboxypeptidase, isoform 1) Q5ZAM8 Q5ZAM8_ORYSJ Os01g0767100 B1143G03.2 OSJNBb0053G03.16 OSNPB_010767100 ENOG411DQ46 FRO1 Q9FJW4 NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Protein FROSTBITE1) DISRUPTION PHENOTYPE: Leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Sugar-sensitive germination, delayed growth, modified respiration pathway, and altered stress responses. {ECO:0000269|PubMed:12084824, ECO:0000269|PubMed:19675153}. Abnormal leaf morphology; Reduced acclimation to low temperature-J. Zhu -2002 FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250, ECO:0000269|PubMed:12084824, ECO:0000269|PubMed:19675153}. MetaCyc:AT5G67590-MONOMER; 17134 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Protein FROSTBITE1) mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; cobalt ion binding [GO:0050897]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; cold acclimation [GO:0009631]; electron transport chain [GO:0022900]; response to osmotic stress [GO:0006970] locus:2158621; AT5G67590 NADH dehydrogenase ubiquinone NADH-ubiquinone oxidoreductase-related-like protein (Os07g0585800 protein),Os06g0656600 protein,Os03g0742001 protein,Os12g0157400 protein Q69WE3,Q67W80,A0A0P0W2U8,A0A0P0Y7I5 Q69WE3_ORYSJ,Q67W80_ORYSJ,A0A0P0W2U8_ORYSJ,A0A0P0Y7I5_ORYSJ OJ1060_D03.128 Os07g0585800 OsJ_24916 OSNPB_070585800,P0460H04.33 Os06g0656600 OSNPB_060656600,Os03g0742001 OSNPB_030742001,Os12g0157400 OSNPB_120157400 ENOG411DQ41 ABCC2 Q6NLC1 AB2D_ARATH ABC transporter D family member 2, chloroplastic (ABC transporter ABCD.2) (AtABCD2) (EC 3.6.3.-) ARA:AT1G54350-MONOMER; 3.6.3.- 80054 ABC transporter D family member 2, chloroplastic (ABC transporter ABCD.2) (AtABCD2) (EC 3.6.3.-) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] locus:2020138; AT1G54350 ABC transporter D family member 2 Os01g0218700 protein (Putative ABC transporter Nda),Os01g0218700 protein (Fragment) Q5QNE1,A0A0P0V0E0 Q5QNE1_ORYSJ,A0A0P0V0E0_ORYSJ Os01g0218700 OSNPB_010218700 P0489G09.13 P0665D10.28,Os01g0218700 OSNPB_010218700 ENOG411DQ40 Q9SAC8,Q9LR26,A0A1P8AVN0,F4I5X3 Q9SAC8_ARATH,Q9LR26_ARATH,A0A1P8AVN0_ARATH,F4I5X3_ARATH Alpha/beta-Hydrolases superfamily protein (At1g10740) (Putative lipase) (T16B5.12 protein),Alpha/beta-Hydrolases superfamily protein (F26F24.20),Alpha/beta-Hydrolases superfamily protein ARA:AT1G10740-MONOMER;,ARA:AT1G23330-MONOMER; 53813,53317,45492,45895 Alpha/beta-Hydrolases superfamily protein (At1g10740) (Putative lipase) (T16B5.12 protein),Alpha/beta-Hydrolases superfamily protein (F26F24.20),Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2019923;,locus:2028060; AT1G10740,AT1G23330 Inherit from COG: Triacylglycerol Lipase Os05g0408300 protein (Putative esterase) (cDNA clone:J013155K07, full insert sequence) Q6I575 Q6I575_ORYSJ Os05g0408300 OsJ_18516 OSJNBb0014K18.6 OSNPB_050408300 P0040B10.15 ENOG411DQ43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain (By similarity) Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic (EC 1.14.19.-) Q0J7E4 STAD6_ORYSJ Os08g0199400 LOC_Os08g09950 OSJNBb0094P23.29 FUNCTION: Introduces a cis double bond in the acyl chain of an acyl-[acyl-carrier protein]. {ECO:0000305}. ENOG411DQ42 PCMP-H77 P0C899 PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 76736 Putative pentatricopeptide repeat-containing protein At3g49142 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:6530298202; AT3G49142 Pentatricopeptide repeat-containing protein Os03g0241800 protein A0A0P0VVG0 A0A0P0VVG0_ORYSJ Os03g0241800 OSNPB_030241800 ENOG411DTF3 WRKY33 Q8S8P5 WRK33_ARATH Probable WRKY transcription factor 33 (WRKY DNA-binding protein 33) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are extremely susceptible to the necrotrophic fungal pathogen B.cinerea. {ECO:0000269|PubMed:17059405, ECO:0000269|PubMed:21990940}. Homozygotes have a WT phenotype. Root bending and root elongation assays under osmotic and ABA treatments showed no significant difference compared to WT. However primary root elongation was inhibited by salt stress. Relative electrolyte leakage was significantly higher in salt - stressed plants as compared to WT.,Double mutant roots were significantly shorter than WT toots when under salt-stress. Sensitive to salt stress-M. Deyholos-2009 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21336597, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940, ECO:0000269|PubMed:22392279}. 57179 Probable WRKY transcription factor 33 (WRKY DNA-binding protein 33) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; camalexin biosynthetic process [GO:0010120]; cellular heat acclimation [GO:0070370]; cellular response to heat [GO:0034605]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; positive regulation of autophagy [GO:0010508]; response to chitin [GO:0010200]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed in roots, leaves and flowers, and at lower levels in stems, siliques and seeds. {ECO:0000269|PubMed:18839316}. locus:2057212; AT2G38470 Transcription factor WRKY transcription factor WRKY24 (OsWRKY24),Os05g0343400 protein (Putative WRKY transcription factor) (Transcription factor OsWRKY53) Q6IEQ7,Q5W6M7 WRK24_ORYSJ,Q5W6M7_ORYSJ WRKY24 Os01g0826400 OsJ_03928 OSNPB_010826400,OsWRKY53 Os05g0343400 OsJ_18137 OSNPB_050343400 P0015F11.10 FUNCTION: Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. ENOG411DTFZ Q6DBI9 Q6DBI9_ARATH At5g10460 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) 33028 At5g10460 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) chloroplast [GO:0009507]; phosphatase activity [GO:0016791]; dephosphorylation [GO:0016311] locus:2142454; AT5G10460 Inherit from COG: Hydrolase HAD superfamily protein involved in N-acetyl-glucosamine catabolism-like (Os08g0542600 protein) (cDNA clone:001-016-E11, full insert sequence) (cDNA clone:J033105A03, full insert sequence) Q6ZJG4 Q6ZJG4_ORYSJ Os08g0542600 Os08g0542600 OJ1521_G02.14 OsJ_28139 OSNPB_080542600 ENOG411DTFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tic20-like protein Os07g0568500 protein (Putative Tic20 protein) (cDNA clone:006-211-H03, full insert sequence) (cDNA clone:006-301-E09, full insert sequence) (cDNA clone:J023003J19, full insert sequence),Os02g0614400 protein (Putative Tic20) (cDNA clone:J023108N22, full insert sequence) Q84SL1,Q6K5Y0 Q84SL1_ORYSJ,Q6K5Y0_ORYSJ OJ1092_A07.131 Os07g0568500 OsJ_24794 OSNPB_070568500,Os02g0614400 OJ2055_H10.26 OSNPB_020614400 P0407A09.5 ENOG411DTFV MQM1.13,emb1067 Q9LT04,F4IW51,F4IW52 Q9LT04_ARATH,F4IW51_ARATH,F4IW52_ARATH At5g23600 (RNA 2'-phosphotransferase, Tpt1 / KptA family) (Similarity to phosphotransferase),RNA 2'-phosphotransferase, Tpt1 / KptA family contains only 5% of wild-type myrosinase activity in the above-ground tissues,ascorbate deficient Embryo defective; Globular-D. Meinke-2002 ARA:AT5G23600-MONOMER; 24056,32301,32100 At5g23600 (RNA 2'-phosphotransferase, Tpt1 / KptA family) (Similarity to phosphotransferase),RNA 2'-phosphotransferase, Tpt1 / KptA family transferase activity, transferring phosphorus-containing groups [GO:0016772]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388] locus:2171661;,locus:2050896; AT5G23600,AT2G45330 tRNA 2'phosphotransferase Os06g0134050 protein (tRNA 2'phosphotransferase-like) Q5VNV8 Q5VNV8_ORYSJ Os06g0134050 Os06g0134050 OsJ_20023 OSNPB_060134050 P0001H02.6 P0679C08.44 ENOG411DTFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain transcription factor Os11g0126900 protein,Os12g0123700 protein Q0IUZ3,A0A0P0Y6B4 Q0IUZ3_ORYSJ,A0A0P0Y6B4_ORYSJ Os11g0126900 OSNPB_110126900,Os12g0123700 OSNPB_120123700 ENOG411DTFK B9DFI7,F4HPE1 PMT2_ARATH,F4HPE1_ARATH Probable methyltransferase PMT2 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein MISCELLANEOUS: Co-expressed with the galacturonosyltransferases GAUT1 and GAUT9. 2.1.1.- 69623,56801 Probable methyltransferase PMT2 (EC 2.1.1.-),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein cytoplasm [GO:0005737]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259],integral component of membrane [GO:0016021]; methyltransferase activity [GO:0008168] locus:2202805; AT1G26850 methyltransferase PMT2-like Dehydration-responsive protein-like (Os09g0415700 protein) Q6EQ17 Q6EQ17_ORYSJ Os09g0415700 Os09g0415700 OsJ_29364 OSNPB_090415700 P0014G10.7 P0707C02.27 ENOG411DTFH Q5XV94 Q5XV94_ARATH NEFA-interacting nuclear protein 24295 NEFA-interacting nuclear protein locus:2097968; AT3G62140 N-terminal domain of NEFA-interacting nuclear protein NIP30 Os01g0321800 protein (cDNA clone:002-118-C08, full insert sequence) Q657N8 Q657N8_ORYSJ Os01g0321800 OSNPB_010321800 P0426D06.24 ENOG411DTFM GB1,AGB1 P49177,F4JLD2,F4JLD1,A8MR96 GBB_ARATH,F4JLD2_ARATH,F4JLD1_ARATH,A8MR96_ARATH Guanine nucleotide-binding protein subunit beta (AGB1) (transducin),GTP binding protein beta 1 DISRUPTION PHENOTYPE: Hypersensitivity to abscisic acid (ABA) and glucose (Glc) during and after seed germination. Shorter hypocotyls and abnormal roots architecture; more auxin-induced lateral roots. Enhanced susceptibility to necrotrophic and vascular pathogenic fungi, such as Alternaria brassicicola, Plectosphaerella cucumerina and Fusarium oxysporum associated with a disturbed expression of genes involved in cell wall metabolism. Longer and wider primary roots with faster growth. Severely compromised root waving and abnormal root skewing response. Hypersensitivity to ethylene (ACC). {ECO:0000269|PubMed:16581874, ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:18397373, ECO:0000269|PubMed:18441222, ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:20862254, ECO:0000269|PubMed:21980142}. show more damage than wild-type Col-0 after exposure to either 500 or 700 ppb ozone.,Similar to the agb1-2 single mutant in resistance to tunicamycin.,Less sensitive to growth inhibition by tunicamycin than wt. Rounded leaves; Short petioles; Slightly shorter inflorescence stems; Short, blunt siliques-J. Walker-2001 FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Together with GCR1 and GPA1, acts as a negative regulator of ABA during seed germination and early seedling development. The heterotrimeric G-protein controls defense responses to necrotrophic and vascular fungi probably by modulating cell wall-related genes expression (e.g. lower xylose content in cell walls); involved in resistance to fungal pathogens such as Alternaria brassicicola and Fusarium oxysporum. Modulates root architecture (e.g. lateral root formation). Acts with XGL3 in the positive regulation of root waving and root skewing. Involved in the asymmetric division of zygote and specification of apical and basal cell lineages (PubMed:27014878). {ECO:0000269|PubMed:16581874, ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:18397373, ECO:0000269|PubMed:18441222, ECO:0000269|PubMed:19948787, ECO:0000269|PubMed:20862254, ECO:0000269|PubMed:21980142, ECO:0000269|PubMed:27014878}. R-ATH-6814122; 41006,38128,34168,40429 Guanine nucleotide-binding protein subunit beta (AGB1) (transducin),GTP binding protein beta 1 Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; heterotrimeric G-protein complex [GO:0005834]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activity [GO:0003924]; signal transducer activity [GO:0004871]; abscisic acid-activated signaling pathway [GO:0009738]; defense response to fungus [GO:0050832]; defense response to fungus, incompatible interaction [GO:0009817]; endoplasmic reticulum unfolded protein response [GO:0030968]; fruit development [GO:0010154]; G-protein coupled receptor signaling pathway [GO:0007186]; jasmonic acid mediated signaling pathway [GO:0009867]; lateral root development [GO:0048527]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; plant organ morphogenesis [GO:1905392]; reactive oxygen species metabolic process [GO:0072593]; regulation of root development [GO:2000280]; response to ethylene [GO:0009723]; response to extracellular stimulus [GO:0009991]; root development [GO:0048364]; seed germination [GO:0009845],signal transduction [GO:0007165] DEVELOPMENTAL STAGE: In flowers, mostly expressed in stigma and pollen, and moderately present in sepals and stamen filaments. In siliques, observed at both ends, gradually disappearing toward the center. {ECO:0000269|PubMed:18441222}. TISSUE SPECIFICITY: Expressed in seedlings (especially at the hypocotyl/root junction), roots, leaves (restricted to veins and guard cells), and flowers (PubMed:17468261, PubMed:18441222). Also present in hydathods (PubMed:17468261). Expressed in guard cells, mesophyll tissue of cotyledons, trichomes and whole siliques, but not in seeds (PubMed:17492287). {ECO:0000269|PubMed:17468261, ECO:0000269|PubMed:17492287, ECO:0000269|PubMed:18441222}. locus:2139489; AT4G34460 guanine nucleotide-binding protein subunit Guanine nucleotide-binding protein subunit beta (WD40 repeat-containing protein 80) (OsWD40-80) Q40687 GBB_ORYSJ RGB1 Os03g0669200 LOC_Os03g46650 OSJNBa0039O18.9 FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. {ECO:0000305}. ENOG411DTFC AGL12 Q38841 AGL12_ARATH Agamous-like MADS-box protein AGL12 (Protein XAANTAL 1) DISRUPTION PHENOTYPE: Retarded root growth, and altered root meristem size and stem-cell patterning. Late flowering phenotype. {ECO:0000269|PubMed:18203871}. FUNCTION: Probable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}. "MISCELLANEOUS: XAANTAL is the Mayan word for ""go slower"" in recognition of the retarded root growth phenotypes of xaantal mutants. {ECO:0000303|PubMed:18203871}." 23919 Agamous-like MADS-box protein AGL12 (Protein XAANTAL 1) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of growth [GO:0040008]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: During embryo development, expressed in a punctate pattern from the globular stage to the torpedo stage. {ECO:0000269|PubMed:11855641}. TISSUE SPECIFICITY: Preferentially expressed in roots (PubMed:7549482). In root meristem, expressed in external cells of columella, lateral root cap and atrichoblasts. In mature root, expressed in the central cylinder (PubMed:11855641). Expressed in leaf vasculature, young floral meristems and nectaries (PubMed:18203871). {ECO:0000269|PubMed:11855641, ECO:0000269|PubMed:18203871, ECO:0000269|PubMed:7549482}. locus:2824536; AT1G71692 Transcription factor MADS-box transcription factor 26 (FDRMADS3) (OsMADS26) (RMADS220) Q0J8G8 MAD26_ORYSJ MADS26 Os08g0112700 LOC_Os08g02070 P0498H04.24 FUNCTION: Probable transcription factor. ENOG411DTFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mo-co oxidoreductase dimerisation domain Os12g0442800 protein (Sulfite oxidase, putative, expressed) Q2QS20 Q2QS20_ORYSJ Os12g0442800 LOC_Os12g25630 Os12g0442800 OSNPB_120442800 ENOG411EMIW Q9C7M2 Q9C7M2_ARATH Uncharacterized protein F14C21.55 (Zinc finger (Ran-binding) family protein) 94863 Uncharacterized protein F14C21.55 (Zinc finger (Ran-binding) family protein) apoplast [GO:0048046]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; embryo development ending in seed dormancy [GO:0009793] locus:2011040; AT1G55040 Zn-finger in Ran binding protein and others NA NA NA NA NA NA NA ENOG411EMIV Q9LP67 Q9LP67_ARATH T1N15.19 (Uncharacterized protein At1g48570) (Uncharacterized protein At1g48570; T1N15.19) (Zinc finger (Ran-binding) family protein) 51818 T1N15.19 (Uncharacterized protein At1g48570) (Uncharacterized protein At1g48570; T1N15.19) (Zinc finger (Ran-binding) family protein) metal ion binding [GO:0046872] locus:2198095; AT1G48570 zinc finger Os03g0708900 protein (Zn-finger in Ran binding protein and others containing protein, expressed) (cDNA clone:J033043D13, full insert sequence) Q10E42 Q10E42_ORYSJ Os03g0708900 LOC_Os03g50120 Os03g0708900 OsJ_12297 OSNPB_030708900 ENOG411DUS8 GORK,SKOR Q94A76,Q9M8S6,A0A1P8BFX1,A0A1P8BFX8,A0A1P8BG02,A0A1I9LLU0,A0A1I9LLU1 GORK_ARATH,SKOR_ARATH,A0A1P8BFX1_ARATH,A0A1P8BFX8_ARATH,A0A1P8BG02_ARATH,A0A1I9LLU0_ARATH,A0A1I9LLU1_ARATH Potassium channel GORK (Guard cell outward rectifying K(+) channel) (AtGORK),Potassium channel SKOR (Stelar K(+) outward rectifying channel),Gated outwardly-rectifying K+ channel,STELAR K+ outward rectifier The skor-1 mutant is sensitive to toxic cations in addition to K+ depletion. Decreased stomatal closure; No other phenotypes detected-H. Sentenac-2003,Low potassium levels in shoot and xylem sap-H. Sentenac-1998 FUNCTION: Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins. {ECO:0000269|PubMed:12671068}.,FUNCTION: Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins. {ECO:0000269|PubMed:9741629}. MISCELLANEOUS: Loss-of-function mutation skor-1 leads to a reduced shoot potassium content. ARA:AT3G02850-MONOMER;MetaCyc:MONOMER-14560; 94461,93899,90542,97089,82595,68209,85443 Potassium channel GORK (Guard cell outward rectifying K(+) channel) (AtGORK),Potassium channel SKOR (Stelar K(+) outward rectifying channel),Gated outwardly-rectifying K+ channel,STELAR K+ outward rectifier integral component of plasma membrane [GO:0005887]; nucleus [GO:0005634]; ion transmembrane transporter activity [GO:0015075]; outward rectifier potassium channel activity [GO:0015271]; ion transport [GO:0006811]; regulation of membrane potential [GO:0042391]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to jasmonic acid [GO:0009753]; response to water deprivation [GO:0009414],integral component of plasma membrane [GO:0005887]; outward rectifier potassium channel activity [GO:0015271]; potassium ion homeostasis [GO:0055075]; potassium ion transport [GO:0006813]; regulation of membrane potential [GO:0042391],integral component of membrane [GO:0016021]; voltage-gated potassium channel activity [GO:0005249] TISSUE SPECIFICITY: Expressed in guard cell-containing tissues, in root epidermal cells and in root hairs. Detected in vascular cells of the root and shoot. {ECO:0000269|PubMed:11113445, ECO:0000269|PubMed:11728473}.,TISSUE SPECIFICITY: Expressed in root pericycle and xylem parenchyma, and in flower at a lower level. {ECO:0000269|PubMed:9741629}. locus:2169866;,locus:2075442; AT5G37500,AT3G02850 Potassium channel Potassium channel KOR1 (K(+) outward-rectifying channel 1) Q653P0 KOR1_ORYSJ Os06g0250600 LOC_Os06g14030 OSJNBa0091G06.35 P0431E05.11 FUNCTION: Probable outward-rectifying potassium channel. {ECO:0000250}. ENOG411DUS4 PPC6-7 Q9M9W9,Q0WRB2,A0A1R7T3I5 P2C34_ARATH,P2C73_ARATH,A0A1R7T3I5_ARATH Probable protein phosphatase 2C 34 (AtPP2C34) (EC 3.1.3.16),Probable protein phosphatase 2C 73 (AtPP2C73) (EC 3.1.3.16) (AtPPC6;7),Protein phosphatase 2C family protein R-ATH-70895; 3.1.3.16 39780,41583,36080 Probable protein phosphatase 2C 34 (AtPP2C34) (EC 3.1.3.16),Probable protein phosphatase 2C 73 (AtPP2C73) (EC 3.1.3.16) (AtPPC6;7),Protein phosphatase 2C family protein plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; negative regulation of growth [GO:0045926]; protein dephosphorylation [GO:0006470]; regulation of microtubule binding [GO:1904526]; response to water deprivation [GO:0009414],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; drought recovery [GO:0009819]; microtubule cytoskeleton organization [GO:0000226]; negative regulation of growth [GO:0045926]; protein dephosphorylation [GO:0006470],protein serine/threonine phosphatase activity [GO:0004722] locus:2078117;,locus:2143325; AT3G05640,AT5G27930 phosphatase 2C Probable protein phosphatase 2C 48 (OsPP2C48) (EC 3.1.3.16) Q6L482 P2C48_ORYSJ Os05g0358500 LOC_Os05g29030 OJ1045_C06.13 OSJNBa0009L15.3 ENOG411DUS5 PDIL1-3,PDIL1-4 Q8VX13,Q9FF55,F4K0F7,F4K0F5 PDI13_ARATH,PDI14_ARATH,F4K0F7_ARATH,F4K0F5_ARATH Protein disulfide isomerase-like 1-3 (AtPDIL1-3) (EC 5.3.4.1) (Protein disulfide isomerase 1) (AtPDI1) (Protein disulfide isomerase-like 2-1) (AtPDIL2-1),Protein disulfide isomerase-like 1-4 (AtPDIL1-4) (EC 5.3.4.1) (Protein disulfide isomerase 2) (AtPDI2) (Protein disulfide isomerase-like 2-2) (AtPDIL2-2),Protein disulfide-isomerase (EC 5.3.4.1),PDI-like 1-4 DISRUPTION PHENOTYPE: No visible phenotype, probably due to functional redundancy. {ECO:0000269|PubMed:21909944}. FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}.,FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000269|PubMed:21909944}. 5.3.4.1 64212,66357,59434,59177 Protein disulfide isomerase-like 1-3 (AtPDIL1-3) (EC 5.3.4.1) (Protein disulfide isomerase 1) (AtPDI1) (Protein disulfide isomerase-like 2-1) (AtPDIL2-1),Protein disulfide isomerase-like 1-4 (AtPDIL1-4) (EC 5.3.4.1) (Protein disulfide isomerase 2) (AtPDI2) (Protein disulfide isomerase-like 2-2) (AtPDIL2-2),Protein disulfide-isomerase (EC 5.3.4.1),PDI-like 1-4 chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; vacuolar membrane [GO:0005774]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976],cell wall [GO:0005618]; chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; extracellular region [GO:0005576]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; vacuolar membrane [GO:0005774]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976]; response to oxidative stress [GO:0006979],endoplasmic reticulum [GO:0005783]; protein disulfide isomerase activity [GO:0003756]; cell redox homeostasis [GO:0045454],cell [GO:0005623]; isomerase activity [GO:0016853]; cell redox homeostasis [GO:0045454] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18574595}.,TISSUE SPECIFICITY: Expressed in germinating seedling, including the cotyledons and hypocotyl, in vascular tissues, in pollen grains, root tips, leaf trichomes, developing seeds and siliques. {ECO:0000269|PubMed:18574595, ECO:0000269|PubMed:21909944}. locus:2082712;,locus:2175811; AT3G54960,AT5G60640 Protein disulfide isomerase Protein disulfide isomerase-like 1-4 (OsPDIL1-4) (EC 5.3.4.1) (Protein disulfide isomerase-like 2-1) (OsPDIL2-1) Q67IX6 PDI14_ORYSJ PDIL1-4 PDIL2-1 Os02g0100100 LOC_Os02g01010 OsJ_04977 OSJNOa183H18.2 FUNCTION: Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}. ENOG411DUS6 AIP1,SAG113,PP2CA,HAI1 Q9LNW3,Q9FIF5,Q9ZW21,P49598,A0A1P8BHI8 P2C03_ARATH,P2C78_ARATH,P2C24_ARATH,P2C37_ARATH,A0A1P8BHI8_ARATH Protein phosphatase 2C 3 (AtPP2C03) (EC 3.1.3.16) (Protein AKT1-INTERACTING 1) (Protein phosphatase 2C AIP1) (PP2C AIP1),Probable protein phosphatase 2C 78 (AtPP2C78) (EC 3.1.3.16) (Protein HIGHLY ABA-INDUCED 1) (Protein SENESCENCE-ASSOCIATED GENE 113),Probable protein phosphatase 2C 24 (AtPP2C24) (EC 3.1.3.16),Protein phosphatase 2C 37 (AtPP2C37) (EC 3.1.3.16) (Protein ABA-HYPERSENSITIVE GERMINATION 3) (Protein phosphatase 2C A) (PP2CA),PP2C protein (Clade A protein phosphatases type 2C) DISRUPTION PHENOTYPE: Delayed senescence. Increased sensitivity to abscisic acid (ABA). {ECO:0000269|PubMed:22007837}. ABA-insensitive phenotype Germination insensitive to ABA and salt-X. Liu-2010,Sensitive to ABA-J. Schroeder-2006 FUNCTION: Involved in the negative regulation of the K(+) potassium channel AKT1 by its dephosphorylation, antagonistically to CIPK proteins (e.g. CIPK23). {ECO:0000269|PubMed:17898163}.,FUNCTION: Acts as negative regulator of abscisic acid (ABA) signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22007837, PubMed:22184656). Activated by the NAC029/NAP transcription factor during ABA signaling in senescing leaves (PubMed:22184656). Functions as negative regulator of osmotic stress and ABA signaling (PubMed:22198272). Acts as negative regulator of response to drought (PubMed:22829320). {ECO:0000269|PubMed:22007837, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:22198272, ECO:0000269|PubMed:22829320}.,FUNCTION: Major negative regulator of abscisic acid (ABA) responses during seed germination and cold acclimation. Confers insensitivity to ABA. Modulates negatively the AKT2/3 activity, which mediates K(+) transport and membrane polarization during stress situations, probably by dephosphorylation. Prevents stomata closure by inactivating the S-type anion efflux channel SLAC1 and its activator SRK2E. {ECO:0000269|PubMed:11439132, ECO:0000269|PubMed:12034902, ECO:0000269|PubMed:16339800, ECO:0000269|PubMed:16361522, ECO:0000269|PubMed:17461784, ECO:0000269|PubMed:19955427, ECO:0000269|PubMed:9448270}. 3.1.3.16; 3.1.3.16 49763,45538,40297,43350,33807 Protein phosphatase 2C 3 (AtPP2C03) (EC 3.1.3.16) (Protein AKT1-INTERACTING 1) (Protein phosphatase 2C AIP1) (PP2C AIP1),Probable protein phosphatase 2C 78 (AtPP2C78) (EC 3.1.3.16) (Protein HIGHLY ABA-INDUCED 1) (Protein SENESCENCE-ASSOCIATED GENE 113),Probable protein phosphatase 2C 24 (AtPP2C24) (EC 3.1.3.16),Protein phosphatase 2C 37 (AtPP2C37) (EC 3.1.3.16) (Protein ABA-HYPERSENSITIVE GERMINATION 3) (Protein phosphatase 2C A) (PP2CA),PP2C protein (Clade A protein phosphatases type 2C) plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; potassium channel activity [GO:0005267]; protein serine/threonine phosphatase activity [GO:0004722]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; negative regulation of seed dormancy process [GO:1902039]; positive regulation of gibberellic acid mediated signaling pathway [GO:0009939]; positive regulation of seed germination [GO:0010030]; release of seed from dormancy [GO:0048838],cis-Golgi network membrane [GO:0033106]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; chloroplast organization [GO:0009658]; leaf senescence [GO:0010150]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118],metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],cytosol [GO:0005829]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein kinase binding [GO:0019901]; protein serine/threonine phosphatase activity [GO:0004722]; abscisic acid-activated signaling pathway [GO:0009738]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; negative regulation of anion channel activity [GO:0010360]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to water deprivation [GO:0009414],protein serine/threonine phosphatase activity [GO:0004722] TISSUE SPECIFICITY: Mostly expressed in seeds and leaves, and, to a lower extent, in roots, stems, and flowers, particularly in siliques. Essentially found in the phloem. {ECO:0000269|PubMed:11439132, ECO:0000269|PubMed:12034902, ECO:0000269|PubMed:16339800, ECO:0000269|PubMed:17461784}. locus:2025087;,locus:2168449;,locus:2043142;,locus:2080787; AT1G07430,AT5G59220,AT2G29380,AT3G11410 phosphatase 2C Probable protein phosphatase 2C 30 (OsPP2C30) (EC 3.1.3.16),Probable protein phosphatase 2C 49 (OsPP2C49) (EC 3.1.3.16),Probable protein phosphatase 2C 9 (OsPP2C09) (EC 3.1.3.16),Os01g0846300 protein,Os11g0473500 protein,Os05g0457200 protein Q84JI0,Q65XG6,Q5N9N2,A0A0P0VAC9,A0A0P0Y2N8,A0A0N7KKW8 P2C30_ORYSJ,P2C49_ORYSJ,P2C09_ORYSJ,A0A0P0VAC9_ORYSJ,A0A0P0Y2N8_ORYSJ,A0A0N7KKW8_ORYSJ PP2C30 Os03g0268600 LOC_Os03g16170 OJA1364E02.13 OsJ_009875 OSJNBa0071M09.4,Os05g0457200 LOC_Os05g38290 OJ1362_D02.1,Os01g0846300 LOC_Os01g62760 OsJ_003961 OsJ_04060 P0446B05.26-1 P0446B05.26-2 P0446B05.26-3,Os01g0846300 OSNPB_010846300,Os11g0473500 OSNPB_110473500,Os05g0457200 OSNPB_050457200 FUNCTION: Together with ABI5, PYL5 and SAPK2, is part of an abscisic acid (ABA) signaling unit that modulates seed germination and early seedling growth. {ECO:0000269|PubMed:22071266}. ENOG411DUS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF248 NA NA NA NA NA NA NA ENOG411DUS2 PPAN Q9ASU7,F4K3M1 PPAN_ARATH,F4K3M1_ARATH Peter Pan-like protein,PETER PAN-like protein FUNCTION: May play a role in cell growth, differentiation and cell cycle progression. 38841,38971 Peter Pan-like protein,PETER PAN-like protein preribosome, large subunit precursor [GO:0030687]; rRNA binding [GO:0019843]; ribosomal large subunit assembly [GO:0000027] locus:2159213; AT5G61770 PETER PAN-like Brix domain containing protein, expressed (Os03g0343700 protein) (cDNA clone:001-025-A01, full insert sequence),Os03g0343700 protein Q10LL9,A0A0P0VXB6 Q10LL9_ORYSJ,A0A0P0VXB6_ORYSJ Os03g0343700 LOC_Os03g22350 Os03g0343700 OsJ_10803 OSNPB_030343700,Os03g0343700 OSNPB_030343700 ENOG411DUSM Q0WNX3,A0A1P8BBW1 Q0WNX3_ARATH,A0A1P8BBW1_ARATH RNA-binding KH domain-containing protein (Uncharacterized protein At5g15270),RNA-binding KH domain-containing protein 59712,57825 RNA-binding KH domain-containing protein (Uncharacterized protein At5g15270),RNA-binding KH domain-containing protein mRNA binding [GO:0003729],RNA binding [GO:0003723] locus:2150956; AT5G15270 KH domain-containing protein KH domain-containing protein, putative, expressed (Os03g0376800 protein) (Putative nucleic acid binding protein) (cDNA clone:J013040N11, full insert sequence) (cDNA clone:J013116I07, full insert sequence) (cDNA clone:J033026O12, full insert sequence),Os03g0376800 protein (Fragment) Q10KN9,A0A0P0VY31 Q10KN9_ORYSJ,A0A0P0VY31_ORYSJ LOC_Os03g25970 Os03g0376800 OsJ_11034 OSJNBb0048D20.13 OSNPB_030376800,Os03g0376800 OSNPB_030376800 ENOG411DUSN WNK5,WNK4 Q9SCU5,Q9LVL5 WNK5_ARATH,WNK4_ARATH Probable serine/threonine-protein kinase WNK5 (AtWNK5) (EC 2.7.11.1) (Protein kinase with no lysine 5),Probable serine/threonine-protein kinase WNK4 (AtWNK4) (EC 2.7.11.1) (Protein kinase with no lysine 4) DISRUPTION PHENOTYPE: Plants display early flowering and altered expression of genes involved in the photoperiod flowering pathway, such as ELF4, TOC1, CO and FT. {ECO:0000269|PubMed:18761494}. FUNCTION: Regulates flowering time by modulating the photoperiod pathway. {ECO:0000269|PubMed:18761494}.,FUNCTION: May regulate flowering time by modulating the photoperiod pathway. {ECO:0000250}. 2.7.11.1 62658,64914 Probable serine/threonine-protein kinase WNK5 (AtWNK5) (EC 2.7.11.1) (Protein kinase with no lysine 5),Probable serine/threonine-protein kinase WNK4 (AtWNK4) (EC 2.7.11.1) (Protein kinase with no lysine 4) cytosol [GO:0005829]; ATP binding [GO:0005524]; protein histidine kinase binding [GO:0043424]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; photoperiodism, flowering [GO:0048573]; protein phosphorylation [GO:0006468],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468] locus:2098242;,locus:2161278; AT3G51630,AT5G58350 With no lysine Probable serine/threonine-protein kinase WNK8 (OsWNK8) (EC 2.7.11.1) (Protein kinase with no lysine 8),Probable serine/threonine-protein kinase WNK7 (OsWNK7) (EC 2.7.11.1) (Protein kinase with no lysine 7),Os11g0114600 protein (Fragment) Q2QYL8,Q2RBE3,A0A0P0XZ31 WNK8_ORYSJ,WNK7_ORYSJ,A0A0P0XZ31_ORYSJ WNK8 Os12g0114100 LOC_Os12g02250 OsJ_033639,WNK7 Os11g0114600 LOC_Os11g02300 OsJ_031409,Os11g0114600 OSNPB_110114600 ENOG411DUSI Q8L7W7 KAD7_ARATH Probable adenylate kinase 7, mitochondrial (EC 2.7.4.3) (ATP-AMP transphosphorylase 7) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 7) (AMK7) FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ARA:AT3G01820-MONOMER; 2.7.4.3 29455 Probable adenylate kinase 7, mitochondrial (EC 2.7.4.3) (ATP-AMP transphosphorylase 7) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 7) (AMK7) mitochondrion [GO:0005739]; adenylate kinase activity [GO:0004017]; ATP binding [GO:0005524] locus:2082329; AT3G01820 adenylate kinase Probable adenylate kinase 7, mitochondrial (EC 2.7.4.3) (Adenylate monophosphate kinase 7) Q6ZJ48 KAD7_ORYSJ Os08g0118900 LOC_Os08g02540 OJ1005_B05.19 OsJ_25843 FUNCTION: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. {ECO:0000250|UniProtKB:P69441}. ENOG411DUSD Q8GYC9 Q8GYC9_ARATH Transcriptional regulator ATRX (Uncharacterized protein At3g52240/T25B15_10) 74802 Transcriptional regulator ATRX (Uncharacterized protein At3g52240/T25B15_10) locus:2100519; AT3G52240 NA Os05g0445800 protein,Os05g0446500 protein (cDNA clone:J013124C24, full insert sequence) Q0DHS5,Q65WS9 Q0DHS5_ORYSJ,Q65WS9_ORYSJ Os05g0445800 Os05g0445800 OsJ_18722 OSNPB_050445800,Os05g0446500 OsJ_18725 OSNPB_050446500 P0615D12.16 ENOG411DUSF Q9LEQ7,Q9LZP3,Q3EAF8 PP382_ARATH,PP293_ARATH,PP294_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial,Pentatricopeptide repeat-containing protein At3g62470, mitochondrial,Pentatricopeptide repeat-containing protein At3g62540, mitochondrial 68464,68562,68507 Pentatricopeptide repeat-containing protein At5g14820, mitochondrial,Pentatricopeptide repeat-containing protein At3g62470, mitochondrial,Pentatricopeptide repeat-containing protein At3g62540, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2185455;,locus:2096099;,locus:2096074; AT5G14820,AT3G62470,AT3G62540 Pentatricopeptide repeat-containing protein Os05g0355200 protein Q5W6Z0 Q5W6Z0_ORYSJ Os05g0355200 OJ1537_B05.15 OSJNBa0036C12.7 OSNPB_050355200 ENOG411DUSA DECOY Q8L7U3,F4HW90 Q8L7U3_ARATH,F4HW90_ARATH At1g14620/T5E21_15 (Decoy),Decoy 27140,25372 At1g14620/T5E21_15 (Decoy),Decoy mitochondrial large ribosomal subunit [GO:0005762]; mitochondrion [GO:0005739]; structural constituent of ribosome [GO:0003735] locus:2204533; AT1G14620 39S ribosomal protein L46 Os06g0300600 protein (Putative decoy) (cDNA clone:001-028-E08, full insert sequence) Q5ZA34 Q5ZA34_ORYSJ Os06g0300600 OSNPB_060300600 P0501G08.36 ENOG411DUSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant calmodulin-binding domain Os06g0695700 protein (Putative neurofilament triplet H1 protein) Q5Z8H3 Q5Z8H3_ORYSJ Os06g0695700 Os06g0695700 OsJ_22487 OSNPB_060695700 P0622F03.25 ENOG411DUSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DUSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Synthase 1-like NA NA NA NA NA NA NA ENOG411DUSP Q9FHN3 Q9FHN3_ARATH Jagunal-like protein (Uncharacterized protein At5g51510) (Uncharacterized protein At5g51510/K17N15_6) 18233 Jagunal-like protein (Uncharacterized protein At5g51510) (Uncharacterized protein At5g51510/K17N15_6) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; endoplasmic reticulum organization [GO:0007029] locus:2153137; AT5G51510 Protein of unknown function (DUF1352) Os10g0508600 protein (Fragment) Q0IWH7 Q0IWH7_ORYSJ Os10g0508600 Os10g0508600 OSNPB_100508600 ENOG411DUSQ RUS1 Q7X6P3 RUS1_ARATH Protein root UVB sensitive 1, chloroplastic (Protein WEAK AUXIN RESPONSE 3) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Extremely stunted growth, failure to develop true postembryonic leaves and arrested primary root elongation, when grown in vitro. {ECO:0000269|PubMed:19075229}. Short roots; Seedling lethal when roots are exposed to UV-B light-Z. He-2009 FUNCTION: Involved in a root UV-B sensing pathway and in the protection against the hypersensitivity to very low-fluence-rate (VLF) UV-B. RSU1 and RUS2 are probably both negative modulators of the same UV-B perception pathway, which when overstimulated in the roots causes a block to postgermination development. Required for polar auxin transport by maintaining the proper levels of auxin transporters AUX1 (AC Q96247) and PIN proteins on the plasma membrane. {ECO:0000269|PubMed:19075229, ECO:0000269|PubMed:19515790, ECO:0000269|PubMed:23580592}. MISCELLANEOUS: Several mutations in ASP2 (AC P46645), but not all, and any of the non-phosphorylated B6 vitamers can suppress the rus phenotype. {ECO:0000269|PubMed:21511809}. 66385 Protein root UVB sensitive 1, chloroplastic (Protein WEAK AUXIN RESPONSE 3) chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plastid [GO:0009536]; developmental process [GO:0032502]; response to UV-B [GO:0010224] TISSUE SPECIFICITY: Expressed in cotyledons, roots, hypocotyls, leaf veins, root vascular tissues and root tips. Expressed near the root apical meristem, in the cortex region of the root elongation zone, in lateral roots and emerging lateral roots. Not detected in extreme root apical meristem or root cap. {ECO:0000269|PubMed:19075229, ECO:0000269|PubMed:23580592}. locus:2077197; AT3G45890 Vitamin B6 photo-protection and homoeostasis OSJNBb0096E05.17 protein (Os04g0290800 protein) Q7XRQ7 Q7XRQ7_ORYSJ OSJNBb0096E05.17 Os04g0290800 OSNPB_040290800 ENOG411EHK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0527000 protein (cDNA, clone: J065137N17, full insert sequence) Q2R3C8 Q2R3C8_ORYSJ LOC_Os11g32380 Os11g0527000 OsJ_34088 OSNPB_110527000 ENOG411EHK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF448) NA NA NA NA NA NA NA ENOG411EHK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EHK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vacuolar (H+)-ATPase G subunit NA NA NA NA NA NA NA ENOG411EHKZ Q9LTY9 Q9LTY9_ARATH Transmembrane protein 13779 Transmembrane protein anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2086661; AT3G27410 NA NA NA NA NA NA NA NA ENOG411EHKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKY Q1PEF3,Q6DYC5,F4JCY5,A0A1I9LQT7 Q1PEF3_ARATH,Q6DYC5_ARATH,F4JCY5_ARATH,A0A1I9LQT7_ARATH Uncharacterized protein 38589,34986,35929,30637 Uncharacterized protein locus:2097006;,locus:2097001; AT3G54530,AT3G54520 NA NA NA NA NA NA NA NA ENOG411EHKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1070) Os01g0592500 protein Q5ZD40 Q5ZD40_ORYSJ Os01g0592500 OsJ_02436 OSNPB_010592500 P0710A02.24 ENOG411EHKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Chromosome 3 open reading frame 37 Os06g0471100 protein A0A0P0WWX0 A0A0P0WWX0_ORYSJ Os06g0471100 OSNPB_060471100 ENOG411EHKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: glutamate receptor NA NA NA NA NA NA NA ENOG411E8E8 Q8LEB7 Q8LEB7_ARATH At5g50335 (Uncharacterized protein At5g50335/MXI22.20) 8462 At5g50335 (Uncharacterized protein At5g50335/MXI22.20) locus:505006686; AT5G50335 NA NA NA NA NA NA NA NA ENOG411E8YB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: mitochondrial import receptor subunit TOM22 homolog 2-like Os02g0131600 protein,Os02g0496900 protein (cDNA clone:001-029-E12, full insert sequence) Q6ZG87,Q6K929 Q6ZG87_ORYSJ,Q6K929_ORYSJ Os02g0131600 OJ1007_D04.21 OsJ_05254 OSNPB_020131600,Os02g0496900 Os02g0496900 OJ1288_D09.11 OSNPB_020496900 ENOG411E5E7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YABBY protein Protein YABBY 7 (OsYABBY7),Os07g0571800 protein A2PZN8,A0A0P0X7W4 YAB7_ORYSJ,A0A0P0X7W4_ORYSJ YAB7 Os07g0571800 LOC_Os07g38410 OsJ_023849,Os07g0571800 OSNPB_070571800 ENOG411E5E1 emb2170 O49284,Q52K83,F4I5I6 O49284_ARATH,Q52K83_ARATH,F4I5I6_ARATH At1g76980 (F22K20.8 protein) (Patatin-like phospholipase domain protein),At1g21390 (Embryo defective 2170) (Uncharacterized protein At1g21390),Patatin-like phospholipase domain protein Embryo defective; Cotyledon-D. Meinke-2003 29242,28240,28348 At1g76980 (F22K20.8 protein) (Patatin-like phospholipase domain protein),At1g21390 (Embryo defective 2170) (Uncharacterized protein At1g21390),Patatin-like phospholipase domain protein locus:2025307;,locus:2027017; AT1G76980,AT1G21390 NA NA NA NA NA NA NA NA ENOG411E5E9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411E5E8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Expressed protein (Os12g0580600 protein) Q2QN38 Q2QN38_ORYSJ Os12g0580600 LOC_Os12g39100 OsJ_36656 OSNPB_120580600 ENOG411E5ED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0686000 protein (cDNA clone:002-171-C05, full insert sequence) Q5N7M5 Q5N7M5_ORYSJ Os01g0686000 OSNPB_010686000 P0478H03.32 ENOG411E5EF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5EA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E5EC LEC2 Q1PFR7 LEC2_ARATH B3 domain-containing transcription factor LEC2 (Protein LEAFY COTYLEDON 2) DISRUPTION PHENOTYPE: Pigmented seeds. Distorted seedlings with elongated hypocotyl and curled cotyledons. Presence of trichomes and accumulation of anthocyanins on cotyledons. Unusual pattern of storage product accumulation in seedlings. {ECO:0000269|PubMed:12244265}. Embryo lethal embryos not viviparous cotyledons partially transformed into leaves complex vascular pattern observed in cotyledons. Embryos are sensitive to abscisic acid. Mutant seeds were usually desiccation tolerant at maturity although their viability was reduced slightly after several weeks of storage. Dry seeds often germinated to produce seedlings with distorted cotyledons. This defect resulted from degeneration of cotyledon tips prior to germination. Some trichomes form on cotyledons after germination and stomata are found on surface of cotyledons of mutant embryos The cotyledon surface on seedlings produced from dry seeds lacked trichomes (likely because any trichomes initiated during embryogenesis did not survive desiccation). Mutant seeds were consequently highly pigmented at maturity and anthocyanins were especially prominent in the top half of the mutant cotyledons. Mutant embryos do not form roots during the first 48 hours of culture. The pattern of storage product accumulation was altered the hypocotyl was filled with mature protein bodies while the cotyledons exhibited a gradient of starch and protein accumulation. Cells in the top half of mutant cotyledons were highly vacuolated packed with starch grains and lacked mature protein bodies whereas cells closer to the hypocotyl contained less starch but many protein bodies. The accumulation of lipid bodies during embryogenesis was unusual too: distribution of lipid bodies was highly abundant in the hypocotyls of the mutant plants.,somatic embryogenesis ability is very limited in lec2 mutants,strongly impaired ability to induce somatic embryos in vitro,Mutant seeds were not desiccation tolerant (unlike lec1) instead 50-80% were desiccation intolerant those that survived and germinated had cotyledons with trichomes on the adaxial surface. Embryos had abnormal suspensors and precociously activated shoot apical meristem.,Similar to tan-1 lec1-2 embryo arrested mostly at transition or heart stage. Embryo defective; Leafy cotyledons-J. Harada-2001 FUNCTION: Transcription regulator that plays a central role in embryo development. Required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase and suppression of premature germination. Ectopic expression is sufficient to promote somatic embryogenesis. {ECO:0000269|PubMed:11573014, ECO:0000269|PubMed:16492731, ECO:0000269|PubMed:18287041}. 41708 B3 domain-containing transcription factor LEC2 (Protein LEAFY COTYLEDON 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of auxin biosynthetic process [GO:0010601]; positive regulation of transcription, DNA-templated [GO:0045893]; seed maturation [GO:0010431]; seed oilbody biogenesis [GO:0010344]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during embryo development. {ECO:0000269|PubMed:11573014}. locus:2032170; AT1G28300 leafy cotyledon 2 NA NA NA NA NA NA NA ENOG411E5EM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0787400 protein (Fragment) A0A0P0V921 A0A0P0V921_ORYSJ Os01g0787400 OSNPB_010787400 ENOG411E5EN C7A10.270,AP22.46 O23177,F4JRA0 O23177_ARATH,F4JRA0_ARATH UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase (Uncharacterized protein At4g37090) (Uncharacterized protein At4g37090/C7A10_270),UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase 21507,21308 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase (Uncharacterized protein At4g37090) (Uncharacterized protein At4g37090/C7A10_270),UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase ligase activity [GO:0016874] locus:2115140; AT4G37090 NA Os02g0186700 protein (Fragment) A0A0P0VFU8 A0A0P0VFU8_ORYSJ Os02g0186700 OSNPB_020186700 ENOG411E5EI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Putative glutaredoxin-C11,Glutaredoxin-C10,Putative glutaredoxin-C12,Glutaredoxin-C13 Q2R075,Q2R076,Q2R073,Q0IRB0 GRC11_ORYSJ,GRC10_ORYSJ,GRC12_ORYSJ,GRC13_ORYSJ GRXC11 Os11g0656000 LOC_Os11g43530,GRXC10 Os11g0655900 LOC_Os11g43520 OsJ_34697,GRXC12 Os11g0656400 LOC_Os11g43550 OsJ_34698,GRXC13 Os11g0656700 LOC_Os11g43580 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E5EH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os05g0421100 protein Q0DI28 Q0DI28_ORYSJ Os05g0421100 Os05g0421100 OSNPB_050421100 ENOG411E5EK GRXS14 Q84Y95 GRS14_ARATH Monothiol glutaredoxin-S14, chloroplastic (AtGRXcp) (AtGrxS14) (CAX-interacting protein 1) (CXIP1) DISRUPTION PHENOTYPE: Plants display high sensitivity to external oxidants, and their content of protein carbonylation is higher than wild-type plants. {ECO:0000269|PubMed:16829529}. FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides (Potential). Probably involved in the regulation of the redox state of the BOLA proteins (Potential). May act as Fe-S cluster donors to Fe-S cluster-requiring proteins (PubMed:18044966). May protect cells against protein oxidative damage (PubMed:16829529). May regulate CAX cation transporters (PubMed:16829529). The GRXS14-BOLA1 heterodimer binds a labile, oxygen sensitive Fe-S cluster (PubMed:24714563). {ECO:0000269|PubMed:16829529, ECO:0000269|PubMed:18044966, ECO:0000269|PubMed:24714563, ECO:0000305}. MISCELLANEOUS: The GRXS14-BOLA1 apo-heterodimer model derived from NMR data shows a domain arrangement totally different from the holo-heterodimer showing evidence for a Rieske-type ligation of a [2Fe-2S] cluster. {ECO:0000269|PubMed:25012657}. 19309 Monothiol glutaredoxin-S14, chloroplastic (AtGRXcp) (AtGrxS14) (CAX-interacting protein 1) (CXIP1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; 2 iron, 2 sulfur cluster binding [GO:0051537]; antiporter activity [GO:0015297]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; protein disulfide oxidoreductase activity [GO:0015035]; cation transport [GO:0006812]; cell redox homeostasis [GO:0045454] TISSUE SPECIFICITY: Hihgly expressed in leaves, at intermediate levels in stems and at lower levels in roots and flowers. {ECO:0000269|PubMed:12480930, ECO:0000269|PubMed:16829529}. locus:2082647; AT3G54900 Glutaredoxin Monothiol glutaredoxin-S7, chloroplastic Q851Y7 GRXS7_ORYSJ GRXS7 Os03g0851200 LOC_Os03g63420 OsJ_13389 OSJNBa0015N08.14 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411E5EJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Expressed protein (Os10g0148700 protein) (Putative proline-rich protein) (cDNA clone:J023100N02, full insert sequence) Q7XGT6 Q7XGT6_ORYSJ LOC_Os10g05790 Os10g0148700 OsJ_30730 OSJNBb0016M10.10 OSNPB_100148700 ENOG411E5ET HON5 Q4V3D1 Q4V3D1_ARATH At1g48620 (High mobility group A5) 51391 At1g48620 (High mobility group A5) chloroplast [GO:0009507]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; DNA binding [GO:0003677]; DNA mediated transformation [GO:0009294]; nucleosome assembly [GO:0006334] locus:2038573; AT1G48620 high mobility group NA NA NA NA NA NA NA ENOG411E5EV PAA1 A0A1P8B649 A0A1P8B649_ARATH P-type ATP-ase 1 24047 P-type ATP-ase 1 metal ion binding [GO:0046872]; metal ion transport [GO:0030001] Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411E5ER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os05g0183100 protein (Fragment) A0A0P0WIN4 A0A0P0WIN4_ORYSJ Os05g0183100 OSNPB_050183100 ENOG411E5EY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0848900 protein Q5N782 Q5N782_ORYSJ Os01g0848900 Os01g0848900 OSNPB_010848900 P0005H10.37 ENOG411E5EX GDU4 Q8S8A0 GDU4_ARATH Protein GLUTAMINE DUMPER 4 FUNCTION: Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. {ECO:0000269|PubMed:20018597, ECO:0000269|Ref.7}. MISCELLANEOUS: Overexpression of GLUTAMINE DUMPER 4 leads to free amino acid levels accumulation (Ref.7, PubMed:20018597). 16851 Protein GLUTAMINE DUMPER 4 integral component of membrane [GO:0016021]; amino acid transport [GO:0006865]; regulation of amino acid export [GO:0080143] TISSUE SPECIFICITY: Expressed in the vascular tissues, even in the minor veins of the leaves. {ECO:0000269|PubMed:20018597, ECO:0000269|Ref.7}. locus:505006270; AT2G24762 Inherit from euNOG: glutamine dumper Os06g0654400 protein Q67WC1 Q67WC1_ORYSJ Os06g0654400 OsJ_22204 OSNPB_060654400 P0709F06.15 ENOG411E5EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif Transcription factor GHD7 (Protein GRAIN NUMBER PLANT HEIGHT AND HEADING DATE 7) E5RQA1 GHD7_ORYSJ GHD7 Os07g0261200 LOC_Os07g15770 P0046D03.119 DISRUPTION PHENOTYPE: Early flowering phenotype under long day (LD) and natural day (ND) conditions. Decreased plant size, number of grains per panicle, yield and dry weight per plant. {ECO:0000269|PubMed:18454147}. FUNCTION: Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Plays a major role as repressor of flowering. Controls flowering time by negatively regulating the expression of EHD1 and HD3A. {ECO:0000269|PubMed:18454147, ECO:0000269|PubMed:23789941}. ENOG411DUN5 CPSF30 A9LNK9,A0A1P8AQZ1 CPSF_ARATH,A0A1P8AQZ1_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 (EC 3.1.21.-) (Protein OXIDATIVE STRESS TOLERANT 6) (Zinc finger CCCH domain-containing protein 11) (AtC3H11),Cleavage and polyadenylation specificity factor 30 DISRUPTION PHENOTYPE: In oxt6, small plants, especially at temperatures above 22 degrees Celsius. Enhanced tolerance to oxidative stress associated with elevated constitutive expression of genes that encode proteins containing thioredoxin- and glutaredoxin- related domains (PubMed:18545667). Altered poly(A) site choice (PubMed:18545667, PubMed:23136375). Suppresses cell death in lesion-mimic mutants (e.g. mips1, lsd1, mkk4, cpr5, and cat2). Enhanced sensitivity to virulent Pseudomonas syringae pv tomato DC3000 (Pst) (PubMed:24706550). {ECO:0000269|PubMed:18545667, ECO:0000269|PubMed:23136375, ECO:0000269|PubMed:24706550}. FUNCTION: Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation. May interact with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Mediates poly(A) site selection (PubMed:23136375). Binds RNA in a calcium-dependent manner (PubMed:16500995, PubMed:17576667, PubMed:20214900). Exhibits endonuclease activity with an ability to nick and degrade linear as well as circular single-stranded RNA that leaves RNA 3' ends with hydroxyl groups, thus mediating processing of the pre-mRNA as a prelude to the polyadenylation (PubMed:17576667). Involved in the post-transcriptional control, probably via poly(A) addition, of the responses of plants to stress, especially genes mediating tolerance to oxidative stress (PubMed:18545667). Plays a role in the regulation of salicylic acid (SA) production via the control of messenger RNA 3' end processing, thus being a key component of programmed cell death and plant immune responses required for resistance to virulent Pseudomonas syringae pv tomato DC3000 (Pst) (PubMed:24706550). {ECO:0000250|UniProtKB:O95639, ECO:0000269|PubMed:16500995, ECO:0000269|PubMed:17576667, ECO:0000269|PubMed:18545667, ECO:0000269|PubMed:20214900, ECO:0000269|PubMed:23136375, ECO:0000269|PubMed:24706550}. 3.1.21.- 70015,27246 30-kDa cleavage and polyadenylation specificity factor 30 (EC 3.1.21.-) (Protein OXIDATIVE STRESS TOLERANT 6) (Zinc finger CCCH domain-containing protein 11) (AtC3H11),Cleavage and polyadenylation specificity factor 30 cytoplasm [GO:0005737]; mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; DNA binding [GO:0003677]; endonuclease activity [GO:0004519]; endoribonuclease activity [GO:0004521]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mRNA 3'-end processing [GO:0031124]; mRNA polyadenylation [GO:0006378]; plant-type hypersensitive response [GO:0009626]; positive regulation of plant-type hypersensitive response [GO:0034052]; positive regulation of programmed cell death [GO:0043068]; regulation of mRNA polyadenylation [GO:1900363]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; response to oxidative stress [GO:0006979]; RNA processing [GO:0006396],metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, siliques, stems and flowers. {ECO:0000269|PubMed:16897494, ECO:0000269|PubMed:18545667}. locus:2028175; AT1G30460 cleavage and polyadenylation specificity factor Zinc finger CCCH domain-containing protein 45 (OsC3H45),Os06g0677700 protein Q0DA50,A0A0P0X0B1 C3H45_ORYSJ,A0A0P0X0B1_ORYSJ Os06g0677700 LOC_Os06g46400 B1153E06.24 P0710B08.18,Os06g0677700 OSNPB_060677700 ENOG411DUNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) (Fragment) A0A0N7KK39 A0A0N7KK39_ORYSJ Os05g0135200 OSNPB_050135200 ENOG411DUNV Q9SQN2,A0A1P8AUY7 FBT3_ARATH,A0A1P8AUY7_ARATH Probable folate-biopterin transporter 3,Major facilitator superfamily protein FUNCTION: Could mediate folate transport. {ECO:0000250}. 55028,44305 Probable folate-biopterin transporter 3,Major facilitator superfamily protein integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2017814; AT1G79710 transporter NA NA NA NA NA NA NA ENOG411DXDT PGI1 Q8H103 G6PIP_ARATH Glucose-6-phosphate isomerase 1, chloroplastic (GPI 1) (EC 5.3.1.9) (Phosphoglucose isomerase 1) (PGI 1) (Phosphohexose isomerase) (PHI) PGI plastidial activity is reduced to 2% of that of wild-type whereas cytosolic PGI activity is unaffected.,Reduced starch in leaves Low starch levels in leaves; Late flowering under short days-J. Chen-2000 FUNCTION: Promotes the synthesis of starch in leaves. {ECO:0000269|PubMed:10806248}. PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.; PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. MetaCyc:AT4G24620-MONOMER; 5.3.1.9 67048 Glucose-6-phosphate isomerase 1, chloroplastic (GPI 1) (EC 5.3.1.9) (Phosphoglucose isomerase 1) (PGI 1) (Phosphohexose isomerase) (PHI) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; plastid [GO:0009536]; glucose-6-phosphate isomerase activity [GO:0004347]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; positive regulation of flower development [GO:0009911]; starch metabolic process [GO:0005982] locus:2121929; AT4G24620 glucose-6-phosphate isomerase Glucose-6-phosphate isomerase (EC 5.3.1.9) Q6ZB94,Q6YXI1 Q6ZB94_ORYSJ,Q6YXI1_ORYSJ Os08g0478800 Os08g0478800 OJ1113_A10.9 OSNPB_080478800,Os09g0465600 Os09g0465600 OJ1005_D12.17 OsJ_29674 OSNPB_090465600 ENOG411DXDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase Putative cellulose synthase A catalytic subunit 11 [UDP-forming] (EC 2.4.1.12) (OsCesA11),Os06g0601600 protein (Fragment),Os05g0201900 protein Q69XK5,A0A0P0WYX4,A0A0P0WIZ2 CESAB_ORYSJ,A0A0P0WYX4_ORYSJ,A0A0P0WIZ2_ORYSJ CESA11 Os06g0600550 LOC_Os06g39970 P0457B11.25 P0486H12.12,Os06g0601600 OSNPB_060601600,Os05g0201900 OSNPB_050201900 FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. {ECO:0000250}. ENOG411DXDN F11F12.2 Q9LPT5 Q9LPT5_ARATH Actin cytoskeleton-regulatory complex pan-like protein (F11F12.2 protein) (Uncharacterized protein F17J6.18) 82138 Actin cytoskeleton-regulatory complex pan-like protein (F11F12.2 protein) (Uncharacterized protein F17J6.18) locus:2007996; AT1G50660 Inherit from euNOG: expressed protein OSJNBa0053K19.22 protein (Os04g0625000 protein) (cDNA, clone: J090049M22, full insert sequence) Q7XPQ1 Q7XPQ1_ORYSJ Os04g0625000 OSJNBa0053K19.22 OSNPB_040625000 ENOG411DXDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os07g0534100 protein A0A0P0X7C9 A0A0P0X7C9_ORYSJ Os07g0534100 OSNPB_070534100 ENOG411DXDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Family of unknown function (DUF566) Os08g0442000 protein (Fragment),Os09g0422600 protein (Streptococcal hemagglutinin-like protein) (cDNA clone:J023113H15, full insert sequence) Q0J5D7,Q69P50 Q0J5D7_ORYSJ,Q69P50_ORYSJ Os08g0442000 Os08g0442000 OSNPB_080442000,Os09g0422600 OJ1740_D06.32 OsJ_29407 OSNPB_090422600 P0418B08.3 ENOG411DXDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEK C terminal domain Os03g0412900 protein A0A0P0VZE9 A0A0P0VZE9_ORYSJ Os03g0412900 OSNPB_030412900 ENOG411DYM8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SBP domain Squamosa promoter-binding-like protein 2,Os01g0922600 protein (Fragment) Q0JGI1,A0A0P0VC85 SPL2_ORYSJ,A0A0P0VC85_ORYSJ SPL2 Os01g0922600 LOC_Os01g69830 B1455F06.12 OsJ_004487,Os01g0922600 OSNPB_010922600 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. ENOG411ECNE ChiC O81861,O81854,O81862,Q1PE65,F4JTY9,F4JTY7,F4JTZ2,F4JTY8,F4JTY4 O81861_ARATH,O81854_ARATH,O81862_ARATH,Q1PE65_ARATH,F4JTY9_ARATH,F4JTY7_ARATH,F4JTZ2_ARATH,F4JTY8_ARATH,F4JTY4_ARATH Chitinase-like protein (Glycosyl hydrolase family protein with chitinase insertion domain-containing protein),Glycosyl hydrolase family 18 protein (Glycosyl hydrolase superfamily protein) (Uncharacterized protein AT4g19730) (Uncharacterized protein T16H5.90),At4g19810 (Glycosyl hydrolase family protein with chitinase insertion domain-containing protein) (Putative chitinase),Glycosyl hydrolase family 18 protein (Glycosyl hydrolase superfamily protein),Glycosyl hydrolase family protein with chitinase insertion domain-containing protein FUNCTION: Can hydrolyze glycol chitin and chitin oligosaccharides (e.g. N-acetylglucosamine) (GlcNAc)4, (GlcNAc)5 and (GlcNAc)6. {ECO:0000269|PubMed:21390509, ECO:0000269|PubMed:22936594}. ARA:AT4G19800-MONOMER;,ARA:AT4G19730-MONOMER;,ARA:AT4G19810-MONOMER;MetaCyc:AT4G19810-MONOMER; R-ATH-189085;R-ATH-6798695; 44357,36670,41128,23539,28791,39731,41109,40589,40082 Chitinase-like protein (Glycosyl hydrolase family protein with chitinase insertion domain-containing protein),Glycosyl hydrolase family 18 protein (Glycosyl hydrolase superfamily protein) (Uncharacterized protein AT4g19730) (Uncharacterized protein T16H5.90),At4g19810 (Glycosyl hydrolase family protein with chitinase insertion domain-containing protein) (Putative chitinase),Glycosyl hydrolase family 18 protein (Glycosyl hydrolase superfamily protein),Glycosyl hydrolase family protein with chitinase insertion domain-containing protein extracellular region [GO:0005576]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032],cell wall [GO:0005618]; extracellular region [GO:0005576]; chitin binding [GO:0008061]; endochitinase activity [GO:0008843]; exochitinase activity [GO:0035885]; carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032]; response to abscisic acid [GO:0009737]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651],chitin binding [GO:0008061]; hydrolase activity [GO:0016787]; carbohydrate metabolic process [GO:0005975] locus:2134015;,locus:2134020;,locus:2134025;,locus:2133930;,locus:2133970;,locus:2133940;,locus:2134030;,locus:2133955;,locus:2134010; AT4G19800,AT4G19730,AT4G19810,AT4G19740,AT4G19770,AT4G19750,AT4G19820,AT4G19760,AT4G19720 Glycosyl hydrolase family NA NA NA NA NA NA NA ENOG411ECNN pentatricopeptide repeat 4 Q9LUR2,A0A1I9LM09 PP238_ARATH,A0A1I9LM09_ARATH Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein 57944,51277 Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial,Pentatricopeptide repeat (PPR) superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2089388; AT3G16710 PPR repeat NA NA NA NA NA NA NA ENOG411ECNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os08g0543700 protein (Phaseolin G-box binding protein PG1-like) Q6ZBI4 Q6ZBI4_ORYSJ Os08g0543700 OJ1521_G02.36 OSNPB_080543700 P0623F08.11 ENOG411ECNY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein Os11g0492100 protein,Os11g0494100 protein,Os11g0493700 protein (Fragment),Os11g0492300 protein,Os11g0492500 protein,Os11g0492900 protein,Os11g0492200 protein A3CBE1,A0A0N7KSY4,A0A0P0Y293,A0A0N7KSY3,A0A0P0Y2P0,A0A0P0Y2E5,A0A0P0Y2H2 A3CBE1_ORYSJ,A0A0N7KSY4_ORYSJ,A0A0P0Y293_ORYSJ,A0A0N7KSY3_ORYSJ,A0A0P0Y2P0_ORYSJ,A0A0P0Y2E5_ORYSJ,A0A0P0Y2H2_ORYSJ Os11g0492100 OsJ_33935 OSNPB_110492100,Os11g0494100 OSNPB_110494100,Os11g0493700 OSNPB_110493700,Os11g0492300 OSNPB_110492300,Os11g0492500 OSNPB_110492500,Os11g0492900 OSNPB_110492900,Os11g0492200 OSNPB_110492200 ENOG411EBDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EBDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EBDK Q9SZI4 Q9SZI4_ARATH At4g26130/F20B18_240 (Cotton fiber protein) 32756 At4g26130/F20B18_240 (Cotton fiber protein) integral component of membrane [GO:0016021] locus:2120815; AT4G26130 NA NA NA NA NA NA NA NA ENOG411EBDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family NA NA NA NA NA NA NA ENOG411EBDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Glycosyl transferase (Group 1 NA NA NA NA NA NA NA ENOG411EBDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBDC RAP2-13 Q9LM15 RA213_ARATH Ethylene-responsive transcription factor RAP2-13 (Ethylene-responsive transcription factor ERF058) (Protein RELATED TO APETALA2 13) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 29137 Ethylene-responsive transcription factor RAP2-13 (Ethylene-responsive transcription factor ERF058) (Protein RELATED TO APETALA2 13) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] locus:2015061; AT1G22190 AP2 NA NA NA NA NA NA NA ENOG411EBDB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol-4-phosphate 5-Kinase NA NA NA NA NA NA NA ENOG411EBDD Q9SI02,O80502,Q84RE1 FBK33_ARATH,FBK47_ARATH,FBK48_ARATH F-box/kelch-repeat protein At2g22030,F-box/kelch-repeat protein At2g44630,F-box/kelch-repeat protein At2g44700 43474,42673,41886 F-box/kelch-repeat protein At2g22030,F-box/kelch-repeat protein At2g44630,F-box/kelch-repeat protein At2g44700 locus:2052601;,locus:2042346;,locus:2042336; AT2G22030,AT2G44630,AT2G44700 kelch repeat-containing F-box family protein NA NA NA NA NA NA NA ENOG411EBDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein NA NA NA NA NA NA NA ENOG411EBDF LECRK111 Q9FJI4 LK111_ARATH Putative L-type lectin-domain containing receptor kinase I.11 (LecRK-I.11) (EC 2.7.11.1) 2.7.11.1 74848 Putative L-type lectin-domain containing receptor kinase I.11 (LecRK-I.11) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674] locus:2158309; AT5G60320 lectin protein kinase family NA NA NA NA NA NA NA ENOG411EBDY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EBDX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EBDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411EBDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (Os11g0687800 protein) Q2QZG5 Q2QZG5_ORYSJ LOC_Os11g46070 Os11g0687800 OSNPB_110687800 ENOG411EBDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin NA NA NA NA NA NA NA ENOG411EBDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipopolysaccharide kinase (Kdo/WaaP) family Mitogen-activated protein kinase 11 (MAP kinase 11) (EC 2.7.11.24) Q5VN19 MPK11_ORYSJ MPK11 Os06g0367900 LOC_Os06g26340 OSJNBa0015G09.36-1 OSJNBa0015G09.36-2 ENOG411EBDR Q9C5N8,A0A1P8AQR4 GDL20_ARATH,A0A1P8AQR4_ARATH GDSL esterase/lipase At1g54020 (EC 3.1.1.-) (Extracellular lipase At1g54020),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:GQT-2628-MONOMER; 3.1.1.- 41801,27399 GDSL esterase/lipase At1g54020 (EC 3.1.1.-) (Extracellular lipase At1g54020),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2014365; AT1G54020 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EBDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mechanosensitive ion channel NA NA NA NA NA NA NA ENOG411EBDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase N-terminal domain NA NA NA NA NA NA NA ENOG411EBDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EBDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) Q94CZ1,Q5ZAF2,Q94CY6 Q94CZ1_ORYSJ,Q5ZAF2_ORYSJ,Q94CY6_ORYSJ Os01g0638000 OsJ_02764 OSNPB_010638000 P0004A09.11 P0696E01.32,Os01g0597800 Os01g0597800 OSNPB_010597800 P0025A05.8,Os01g0638600 OsJ_02767 OSNPB_010638600 P0004A09.16 P0696E01.37 ENOG411EBD9 TRB3 Q9M2X3 TRB3_ARATH Telomere repeat-binding factor 3 (AtTRB3) (MYB transcription factor) (Telomere-binding protein 2) (AtTBP2) FUNCTION: Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}. 32247 Telomere repeat-binding factor 3 (AtTRB3) (MYB transcription factor) (Telomere-binding protein 2) (AtTBP2) chromatin [GO:0000785]; nuclear chromosome, telomeric region [GO:0000784]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; nucleus [GO:0005634]; double-stranded telomeric DNA binding [GO:0003691]; protein homodimerization activity [GO:0042803]; single-stranded telomeric DNA binding [GO:0043047]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; nucleosome assembly [GO:0006334]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. locus:2097325; AT3G49850 H15 NA NA NA NA NA NA NA ENOG411EBD8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclic nucleotide-binding domain NA NA NA NA NA NA NA ENOG411EBD1 Q9M8S5 Q9M8S5_ARATH ARM repeat superfamily protein (At3g02840) (Expressed protein) (F13E7.22 protein) (Uncharacterized protein At3g02840/F13E7_22) 42445 ARM repeat superfamily protein (At3g02840) (Expressed protein) (F13E7.22 protein) (Uncharacterized protein At3g02840/F13E7_22) cytoplasm [GO:0005737]; nucleus [GO:0005634]; response to ozone [GO:0010193] locus:2075457; AT3G02840 Immediate-early fungal elicitor family protein NA NA NA NA NA NA NA ENOG411EBD0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: trafficking protein particle complex NA NA NA NA NA NA NA ENOG411EBD3 ATJ39,ARL2 Q6XL73,A0A1P8ANV3,A0A1P8ANT9 DNJ39_ARATH,A0A1P8ANV3_ARATH,A0A1P8ANT9_ARATH Chaperone protein dnaJ 39 (AtDjC39) (AtJ39) (Protein ARG1-LIKE 2) (AtARL2),ARG1-like 2 FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to be involved in early gravitropic signal transduction within the gravity-perceiving cells (statocytes). {ECO:0000250, ECO:0000269|PubMed:12970478}. 46785,40791,39587 Chaperone protein dnaJ 39 (AtDjC39) (AtJ39) (Protein ARG1-LIKE 2) (AtARL2),ARG1-like 2 membrane [GO:0016020] TISSUE SPECIFICITY: Expressed constitutively at low levels in seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:12970478}. locus:2202725; AT1G59980 DnaJ domain NA NA NA NA NA NA NA ENOG411EBD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBD5 MYBC1 O22210 MYBC1_ARATH Transcription factor MYBC1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased tolerance to freezing. {ECO:0000269|PubMed:20331973}. The mutant plants exhibited increased tolerance to freezing. Resistant to freezing-J. Li-2010 FUNCTION: Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. 27554 Transcription factor MYBC1 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}. locus:2058445; AT2G40970 MYB family transcription factor NA NA NA NA NA NA NA ENOG411EBD4 A0MFH4 LOR16_ARATH Protein LURP-one-related 16 FUNCTION: Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors. {ECO:0000250}. 23709 Protein LURP-one-related 16 locus:2180459; AT5G20640 Pfam:DUF567 NA NA NA NA NA NA NA ENOG411EBD7 F11F8_17 Q9SF44 Q9SF44_ARATH CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Putative pathogenesis-related protein) 21211 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (Putative pathogenesis-related protein) extracellular region [GO:0005576] locus:2075039; AT3G09590 SCP NA NA NA NA NA NA NA ENOG411EBD6 CML43 Q9FI19 CML43_ARATH Probable calcium-binding protein CML43 (Calmodulin-like protein 43) FUNCTION: Calcium-binding protein that may mediate calcium-dependent signal during plant defense response. {ECO:0000269|PubMed:16240180}. R-ATH-6798695; 20254 Probable calcium-binding protein CML43 (Calmodulin-like protein 43) calcium ion binding [GO:0005509]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Expressed specifically in roots. {ECO:0000269|PubMed:16240180}. locus:2163381; AT5G44460 calcium-binding protein NA NA NA NA NA NA NA ENOG411DY30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor kinase Os10g0492400 protein A0A0P0XW41 A0A0P0XW41_ORYSJ Os10g0492400 OSNPB_100492400 ENOG411DY33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan endotransglucosylase hydrolase protein Glycosyl hydrolases family 16 protein, expressed (Os03g0117300 protein) (cDNA clone:J033058F24, full insert sequence) Q10SM5 Q10SM5_ORYSJ Os03g0117300 LOC_Os03g02610 Os03g0117300 OsJ_09182 OSNPB_030117300 ENOG411DY35 Q9ZUY1,F4K2V9,F4K2W0,A0A1P8BC06 PP173_ARATH,F4K2V9_ARATH,F4K2W0_ARATH,A0A1P8BC06_ARATH Pentatricopeptide repeat-containing protein At2g27800, mitochondrial,Pentatricopeptide (PPR) repeat-containing protein 50697,65707,63228,46739 Pentatricopeptide repeat-containing protein At2g27800, mitochondrial,Pentatricopeptide (PPR) repeat-containing protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],nucleic acid binding [GO:0003676] locus:2042057;,locus:2146410; AT2G27800,AT5G27300 pentatricopeptide repeat-containing protein At2g27800 Os01g0747600 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:J033067F03, full insert sequence) (cDNA clone:J033138H13, full insert sequence) Q94J37 Q94J37_ORYSJ Os01g0747600 Os01g0747600 OSNPB_010747600 P0481E12.14 ENOG411DY36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os01g0706100 protein (Ribosomal RNA apurinic site specific lyase-like),Os08g0336900 protein,Os01g0595800 protein Q5N8F4,A0A0P0XEI0,A0A0P0V4T2 Q5N8F4_ORYSJ,A0A0P0XEI0_ORYSJ,A0A0P0V4T2_ORYSJ Os01g0706100 OsJ_03185 OSNPB_010706100 P0684B02.37 P0692C11.18,Os08g0336900 OSNPB_080336900,Os01g0595800 OSNPB_010595800 ENOG411DY37 Q8GUP2 Q8GUP2_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At1g16445) 30155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At1g16445) chloroplast [GO:0009507]; methyltransferase activity [GO:0008168] locus:504956221; AT1G16445 rRNA Methylase Os05g0511700 protein Q0DGU2 Q0DGU2_ORYSJ Os05g0511700 Os05g0511700 OsJ_19168 OSNPB_050511700 ENOG411DY38 Q9SV28,F4JAX0 Q9SV28_ARATH,F4JAX0_ARATH AT4g01000/F3I3_20 (At4g01000) (Ubiquitin-like superfamily protein) (Uncharacterized protein AT4g01000),Ubiquitin family protein 45481,37732 AT4g01000/F3I3_20 (At4g01000) (Ubiquitin-like superfamily protein) (Uncharacterized protein AT4g01000),Ubiquitin family protein nucleus [GO:0005634] locus:2125201;,locus:2829003; AT4G01000,AT3G06455 UPF0667 protein C1orf55 homolog Os01g0681600 protein (Splicing factor-like),Os01g0681600 protein (Fragment) Q8LHF3,A0A0N7KDI5 Q8LHF3_ORYSJ,A0A0N7KDI5_ORYSJ P0019E03.25-1 Os01g0681600 OSNPB_010681600,Os01g0681600 OSNPB_010681600 ENOG411DY39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411DY3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family NA NA NA NA NA NA NA ENOG411DY3R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA adipocyte plasma membrane-associated ABC transporter permease protein-like protein (Os07g0614000 protein) (cDNA clone:001-204-A10, full insert sequence) Q8H3A4 Q8H3A4_ORYSJ P0616D06.112-1 Os07g0614000 OSNPB_070614000 ENOG411DY3S AtMYB116,MYB116 Q9FRI3,Q94FU0,A0A1P8ARZ7 Q9FRI3_ARATH,Q94FU0_ARATH,A0A1P8ARZ7_ARATH Myb domain protein 116 (Myb-related transcription factor (Cpm7), putative),MYB transcription factor (Myb domain protein 116) (Myb family transcription factor) (Putative transcription factor MYB116),Myb domain protein 116 32166,32692,35619 Myb domain protein 116 (Myb-related transcription factor (Cpm7), putative),MYB transcription factor (Myb domain protein 116) (Myb family transcription factor) (Putative transcription factor MYB116),Myb domain protein 116 DNA binding [GO:0003677],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355] locus:2032975; AT1G25340 Transcription factor NA NA NA NA NA NA NA ENOG411DY3T CICDH,ICDH Q9SRZ6,Q9SLK0,Q8LPJ5,A0A1P8ASL1 ICDHC_ARATH,ICDHX_ARATH,ICDHP_ARATH,A0A1P8ASL1_ARATH Cytosolic isocitrate dehydrogenase [NADP] (EC 1.1.1.42),Peroxisomal isocitrate dehydrogenase [NADP] (EC 1.1.1.42),Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial (EC 1.1.1.42),Isocitrate dehydrogenase DISRUPTION PHENOTYPE: Slight reduction in plant growth. Constitutive expression of pathogenesis-related genes and enhanced resistance to the bacterial pathogen P.syringae pv. tomato. {ECO:0000269|PubMed:20199623}. Semi-dwarf; Resistant to bacterial infection-G. Noctor-2010 FUNCTION: May supply 2-oxoglutarate for amino acid biosynthesis and ammonia assimilation via the glutamine synthetase/glutamate synthase (GS/GOGAT) pathway. May be involved in the production of NADPH to promote redox signaling or homeostasis in response to oxidative stress. {ECO:0000269|PubMed:20199623}.,FUNCTION: May be involved in response to oxidative stresses. {ECO:0000250}. MetaCyc:AT1G65930-MONOMER;,ARA:AT1G54340-MONOMER;,ARA:AT5G14590-MONOMER; R-ATH-389542;R-ATH-6798695;R-ATH-71403; 1.1.1.42; 1.1.1.42 45746,47234,54196,34126 Cytosolic isocitrate dehydrogenase [NADP] (EC 1.1.1.42),Peroxisomal isocitrate dehydrogenase [NADP] (EC 1.1.1.42),Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial (EC 1.1.1.42),Isocitrate dehydrogenase apoplast [GO:0048046]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; isocitrate dehydrogenase (NADP+) activity [GO:0004450]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; defense response to bacterium [GO:0042742]; isocitrate metabolic process [GO:0006102]; NADP metabolic process [GO:0006739]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; response to zinc ion [GO:0010043]; tricarboxylic acid cycle [GO:0006099],peroxisome [GO:0005777]; plasma membrane [GO:0005886]; isocitrate dehydrogenase (NADP+) activity [GO:0004450]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; isocitrate metabolic process [GO:0006102]; tricarboxylic acid cycle [GO:0006099],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; mitochondrion [GO:0005739]; isocitrate dehydrogenase (NADP+) activity [GO:0004450]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; isocitrate metabolic process [GO:0006102]; tricarboxylic acid cycle [GO:0006099],isocitrate dehydrogenase (NADP+) activity [GO:0004450]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; isocitrate metabolic process [GO:0006102] locus:2009759;,locus:2020128;,locus:2222672; AT1G65930,AT1G54340,AT5G14590 Isocitrate dehydrogenase NADP Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Q9XHX4,Q65XK3,Q0JBV4 Q9XHX4_ORYSJ,Q65XK3_ORYSJ,Q0JBV4_ORYSJ OSJNBa0049B20.19 Os01g0248400 OSNPB_010248400 P0034C11.22,Os05g0573200 OJ1735_C10.15 OsJ_19624 OSNPB_050573200,Os04g0508200 Os04g0508200 OSNPB_040508200 ENOG411DY3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dimerisation domain Acetylserotonin O-methyltransferase 2 (OsASMT2) (EC 2.1.1.4),Acetylserotonin O-methyltransferase 1 (OsASMT1) (EC 2.1.1.4),Acetylserotonin O-methyltransferase 3 (OsASMT3) (EC 2.1.1.4),Os06g0240800 protein,Os06g0281300 protein Q8VWJ6,Q6EPG8,Q8VWG4,A0A0P0WUH8,A0A0P0WVA4 ASMT2_ORYSJ,ASMT1_ORYSJ,ASMT3_ORYSJ,A0A0P0WUH8_ORYSJ,A0A0P0WVA4_ORYSJ ASMT2 Os10g0118200 LOC_Os10g02880 OsJ_30548 OSJNBa0023I19.21 OSJNBa0079B05.4,ASMT1 ASMT Os09g0344500 LOC_Os09g17560 OSJNBb0057I13.39 OSJNBb0085I16.5,ASMT3 Os10g0118000 LOC_Os10g02840 OSJNBa0023I19.18 OSJNBa0079B05.1,Os06g0240800 OSNPB_060240800,Os06g0281300 OSNPB_060281300 FUNCTION: Methyltransferase which catalyzes the transfer of a methyl group onto N-acetylserotonin, producing melatonin (N-acetyl-5-methoxytryptamine). {ECO:0000269|PubMed:24033370}.,FUNCTION: Methyltransferase which catalyzes the transfer of a methyl group onto N-acetylserotonin, producing melatonin (N-acetyl-5-methoxytryptamine). {ECO:0000269|PubMed:21210840, ECO:0000269|PubMed:22747959, ECO:0000269|PubMed:24033370, ECO:0000269|PubMed:24134674}. ENOG411DY3Y SPL2 Q9SYH3,A0A1P8AN81 SPL2P_ARATH,A0A1P8AN81_ARATH E3 ubiquitin-protein ligase SPL2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SPL2) (SP1-like protein 2),E3 Ubiquitin ligase family protein FUNCTION: Possesses E3 ubiquitin-protein ligase activity. {ECO:0000250|UniProtKB:Q8L7N4}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 42697,34193 E3 ubiquitin-protein ligase SPL2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SPL2) (SP1-like protein 2),E3 Ubiquitin ligase family protein chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; organelle organization [GO:0006996],integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842]; organelle organization [GO:0006996] locus:2014405; AT1G54150 mitochondrial ubiquitin ligase activator of nfkb 1-like C3HC4 zinc finger containing protein, putative, expressed (Os03g0177300 protein) (cDNA clone:J013128J19, full insert sequence) Q10R01 Q10R01_ORYSJ LOC_Os03g08000 Os03g0177300 OSNPB_030177300 ENOG411DY3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YABBY protein Protein YABBY 1 (OsYABBY1) (OsYAB1) (Protein FILAMENTOUS FLOWER 1),Os07g0160100 protein (Fragment) Q7XIM7,A0A0P0X2Q2 YAB1_ORYSJ,A0A0P0X2Q2_ORYSJ YAB1 FIL1 Os07g0160100 LOC_Os07g06620,Os07g0160100 OSNPB_070160100 FUNCTION: May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. MISCELLANEOUS: YAB1, from cultivar indica Minghui 63, was shown by Dai et al (PubMed:17369428) to be involved in regulation of gibberellin (GA) biosynthesis, to bind to the 5'-TCTGTTA-3' GA-responsive element of gibberellin 3-beta-dioxygenase 2 (GA3ox2) promoter and be transiently induced by GA in seedlings. It has to be pointed out that this YAB1 sequence differs from cultivar japonica nipponbare sequence by seven amino acids, of which four are located in the zinc finger domain. {ECO:0000305|PubMed:17369428}. ENOG411DY3E SYN1 Q9S7T7 SCC11_ARATH Sister chromatid cohesion 1 protein 1 (Protein DETERMINATE INFERTILE 1) (SCC1 homolog 1) homozygous are embryo lethal arrested at the globular stage and do not undergo transition to heart stage Completely male and female sterile due to defects in meiosis-C. Makaroff-1999 FUNCTION: Involved in chromosome condensation, pairing and segregation during meiosis. Responsible for cohesion between replicated sister chromatids. R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; 71228 Sister chromatid cohesion 1 protein 1 (Protein DETERMINATE INFERTILE 1) (SCC1 homolog 1) chromosome [GO:0005694]; cohesin complex [GO:0008278]; nuclear cohesin complex [GO:0000798]; chromatin binding [GO:0003682]; attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation [GO:0051455]; chromosome organization [GO:0051276]; double-strand break repair [GO:0006302]; meiotic chromosome condensation [GO:0010032]; meiotic sister chromatid cohesion, centromeric [GO:0051754]; sister chromatid cohesion [GO:0007062] TISSUE SPECIFICITY: Isoform 2 is expressed at low levels in buds, leaves and roots, whereas expression of isoform 1 is confined to buds. locus:2169667; AT5G05490 Sister chromatid cohesion 1 protein Os05g0580500 protein (Fragment) A0A0P0WRH8 A0A0P0WRH8_ORYSJ Os05g0580500 OSNPB_050580500 ENOG411DY3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPPc Inositol polyphosphate-5-phosphatase-like (Os08g0425500 protein) (cDNA clone:002-120-B12, full insert sequence) Q84Q50 Q84Q50_ORYSJ P0456B03.116 Os08g0425500 OsJ_27376 OSNPB_080425500 ENOG411DY3H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1 / YhbY (CRM) domain NA NA NA NA NA NA NA ENOG411DY3I Q9SY05 Q9SY05_ARATH At4g02800 (GRIP/coiled-coil protein) (Uncharacterized protein AT4g02800) (Uncharacterized protein T5J8.12) 37990 At4g02800 (GRIP/coiled-coil protein) (Uncharacterized protein AT4g02800) (Uncharacterized protein T5J8.12) locus:2140195; AT4G02800 NA OSJNBa0065B15.1 protein (OSJNBb0071D01.5 protein) (Os04g0228100 protein) Q7X6C4 Q7X6C4_ORYSJ OSJNBa0065B15.1 Os04g0228100 OsJ_13480 OSJNBb0071D01.5 OSNPB_040228100 ENOG411DY3J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain Os03g0189600 protein (Oxidoreductase, zinc-binding dehydrogenase family protein, expressed) (cDNA clone:001-042-C10, full insert sequence) (cDNA clone:J013062F20, full insert sequence) Q10QN9 Q10QN9_ORYSJ Os03g0189600 LOC_Os03g09020 Os03g0189600 OsJ_09718 OSNPB_030189600 ENOG411DY3K SHA,SHB B5X561,Q56XZ1 SHA_ARATH,SHB_ARATH SH2 domain-containing protein A (AtSHA) (STAT-type linker-SH2 domain factor A),SH2 domain-containing protein B (AtSHB) (STAT-type linker-SH2 domain factor B) 72636,75812 SH2 domain-containing protein A (AtSHA) (STAT-type linker-SH2 domain factor A),SH2 domain-containing protein B (AtSHB) (STAT-type linker-SH2 domain factor B) nucleus [GO:0005634]; signal transducer activity [GO:0004871]; transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. locus:2020377;,locus:2202995; AT1G17040,AT1G78540 NA Os10g0567300 protein (Fragment) A0A0N7KS86 A0A0N7KS86_ORYSJ Os10g0567300 OSNPB_100567300 ENOG411DY3M Q9FJU3 FBD28_ARATH Putative FBD-associated F-box protein At5g56690 46614 Putative FBD-associated F-box protein At5g56690 locus:2165021; AT5G56690 NA NA NA NA NA NA NA NA ENOG411DY3N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TBC1 domain family member NA NA NA NA NA NA NA ENOG411E2R2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os01g0917900 protein (Zinc finger (C3HC4-type RING finger)-like) (cDNA clone:001-127-C08, full insert sequence) Q8RZV3 Q8RZV3_ORYSJ Os01g0917900 Os01g0917900 OSNPB_010917900 P0413C03.27 ENOG411E2RZ F4K6X6 F4K6X6_ARATH HSP20-like chaperones superfamily protein 28131 HSP20-like chaperones superfamily protein integral component of membrane [GO:0016021] locus:2147137; AT5G20970 Hsp20/alpha crystallin family Os03g0656000 protein C7IZC4 C7IZC4_ORYSJ Os03g0656000 OSNPB_030656000 ENOG411E4R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0126600 protein (cDNA clone:001-112-E04, full insert sequence) Q6Z2M6 Q6Z2M6_ORYSJ Os02g0126600 Os02g0126600 OsJ_05213 OSNPB_020126600 P0482F12.17 ENOG411E4R7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: zinc finger CCCH domain-containing protein Os07g0668600 protein (Zinc finger transcription factor-like protein) Q8H3R4 Q8H3R4_ORYSJ P0625E02.110 Os07g0668600 OSNPB_070668600 ENOG411E4R6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Os04g0612100 protein A0A0P0WES2 A0A0P0WES2_ORYSJ Os04g0612100 OSNPB_040612100 ENOG411E4R1 CASP-like protein 1D1 Q9FE29,Q9SQU2,A0A1P8B7Z3 CSPLM_ARATH,CSPLD_ARATH,A0A1P8B7Z3_ARATH CASP-like protein 1D1 (AtCASPL1D1),CASP-like protein 1D2 (AtCASPL1D2),CASP-like protein 20524,21157,14723 CASP-like protein 1D1 (AtCASPL1D1),CASP-like protein 1D2 (AtCASPL1D2),CASP-like protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; iron-sulfur cluster binding [GO:0051536],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] DEVELOPMENTAL STAGE: Accumulates exclusively in the root endodermis at a late developmental stage. Strongly expressed in endodermal cells overlaying lateral root primordia and later in a collar of endodermal cells at the base of the emerged lateral root. Also expressed in the floral organ abscission zone in cells that detach along with the shed organs. {ECO:0000269|PubMed:24920445}. TISSUE SPECIFICITY: Expressed in the root endodermis and flowers. {ECO:0000269|PubMed:24920445}. locus:2130479;,locus:2081091; AT4G15610,AT3G06390 CASP-like protein CASP-like protein 1D1 (OsCASPL1D1) Q6YT98 CSPL7_ORYSJ Os07g0442900 LOC_Os07g26110 B1157F01.19 OsJ_023119 ENOG411E4R0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411E4R3 Q8VY47 Q8VY47_ARATH At1g21820 (Uncharacterized protein At1g21820) 23276 At1g21820 (Uncharacterized protein At1g21820) locus:2036992; AT1G21830 NA Os04g0690500 protein (cDNA clone:001-007-E09, full insert sequence) (cDNA clone:006-204-H02, full insert sequence) (cDNA clone:006-206-A03, full insert sequence) (cDNA clone:J013047N20, full insert sequence) Q0J8S1 Q0J8S1_ORYSJ Os04g0690500 Os04g0690500 OsJ_16729 OSNPB_040690500 ENOG411E4R2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0554200 protein,Os01g0653350 protein Q69SU1,A0A0P0V663 Q69SU1_ORYSJ,A0A0P0V663_ORYSJ Os02g0554200 OSNPB_020554200 P0470G10.16,Os01g0653350 OSNPB_010653350 ENOG411E4R9 Q8S8D0 Q8S8D0_ARATH At2g20515 (Expressed protein) (Pollen Ole e I family allergen protein) (Uncharacterized protein At2g20515) 17563 At2g20515 (Expressed protein) (Pollen Ole e I family allergen protein) (Uncharacterized protein At2g20515) locus:505006257; AT2G20515 NA NA NA NA NA NA NA NA ENOG411E4R8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain containing protein (Os10g0523900 protein) (Putative transcription factor),AP2 domain containing protein, expressed (Os03g0117900 protein) Q8H099,Q10SM1 Q8H099_ORYSJ,Q10SM1_ORYSJ Os10g0523900 LOC_Os10g38000 OSNPB_100523900,LOC_Os03g02650 Os03g0117900 OsJ_09184 OSNPB_030117900 ENOG411E4RU SYN2 Q9FQ20,A0A1P8B9R6,A0A1P8B9P6,A0A1P8B9R2,B3H605 SCC12_ARATH,A0A1P8B9R6_ARATH,A0A1P8B9P6_ARATH,A0A1P8B9R2_ARATH,B3H605_ARATH Sister chromatid cohesion 1 protein 2 (SCC1 homolog 2) (AtRAD21-1),Rad21/Rec8-like family protein FUNCTION: May be involved in sister chromatid cohesion during mitosis. R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; 91459,76666,82398,74038,76794 Sister chromatid cohesion 1 protein 2 (SCC1 homolog 2) (AtRAD21-1),Rad21/Rec8-like family protein nuclear cohesin complex [GO:0000798]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; cell division [GO:0051301]; double-strand break repair [GO:0006302]; sister chromatid cohesion [GO:0007062],nuclear chromosome [GO:0000228] TISSUE SPECIFICITY: Low expression in shoots, buds, siliques, leaves and roots. Found in, but not limited to, actively dividing cells: in procambium, protoderm and ground meristem in roots, and in shoot and floral meristems. locus:2164501; AT5G40840 Conserved region of Rad21 / Rec8 like protein NA NA NA NA NA NA NA ENOG411E4RT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os12g0158300 protein (cDNA, clone: J080307E12, full insert sequence) Q2QXG3 Q2QXG3_ORYSJ LOC_Os12g06150 Os12g0158300 OsJ_35290 OSNPB_120158300 ENOG411E4RW Q944G6 Q944G6_ARATH AT4g03150/F4C21_7 (Plant/protein) 20785 AT4g03150/F4C21_7 (Plant/protein) locus:2125467; AT4G03150 NA Expressed protein (Os12g0534100 protein) (cDNA clone:J023076N12, full insert sequence) Q2QPD2 Q2QPD2_ORYSJ LOC_Os12g34880 Os12g0534100 OsJ_36350 OSNPB_120534100 ENOG411E4RV Q6NNH5,O82172 Q6NNH5_ARATH,O82172_ARATH At1g32690 (DUF740 family protein),DUF740 family protein (Uncharacterized protein At2g35200) 21555,22602 At1g32690 (DUF740 family protein),DUF740 family protein (Uncharacterized protein At2g35200) plasma membrane [GO:0005886] locus:2035599;,locus:2063444; AT1G32690,AT2G35200 NA Os02g0693000 protein,Os02g0255900 protein Q6Z8A1,A0A0P0VH99 Q6Z8A1_ORYSJ,A0A0P0VH99_ORYSJ Os02g0693000 Os02g0693000 OJ1148_D05.22 OSNPB_020693000 P0017H11.10,Os02g0255900 OSNPB_020255900 ENOG411E4RQ psaC P62090 PSAC_ARATH Photosystem I iron-sulfur center (EC 1.97.1.12) (9 kDa polypeptide) (PSI-C) (Photosystem I subunit VII) (PsaC) FUNCTION: Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. {ECO:0000255|HAMAP-Rule:MF_01303}. MetaCyc:MONOMER-1097; 1.97.1.12 9038 Photosystem I iron-sulfur center (EC 1.97.1.12) (9 kDa polypeptide) (PSI-C) (Photosystem I subunit VII) (PsaC) chloroplast [GO:0009507]; chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; photosystem I [GO:0009522]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; photosynthesis [GO:0015979]; photosynthetic electron transport in photosystem I [GO:0009773] locus:504954729; ATCG01060 essential for photochemical activity. FB is the terminal electron acceptor of PSI donating electrons to ferredoxin. The C-terminus interacts with PsaA B D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin-ferredoxin oxidoreductase converting photonic excitation into a charge separation which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0 A1 FX FA and FB in turn Photosystem I iron-sulfur center (EC 1.97.1.12) (9 kDa polypeptide) (PSI-C) (Photosystem I subunit VII) (PsaC),Os09g0485201 protein P0C361,A0A0P0XPX5 PSAC_ORYSJ,A0A0P0XPX5_ORYSJ psaC Nip170,Os09g0485201 OSNPB_090485201 FUNCTION: Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. {ECO:0000255|HAMAP-Rule:MF_01303}. ENOG411E4RP Q8LDK7 Q8LDK7_ARATH At3g09085 (Transmembrane protein (DUF962)) 13170 At3g09085 (Transmembrane protein (DUF962)) integral component of membrane [GO:0016021] locus:505006332; AT3G09085 Protein of unknown function (DUF962) Os03g0265800 protein (Fragment) Q0DT72 Q0DT72_ORYSJ Os03g0265800 Os03g0265800 OSNPB_030265800 ENOG411E4RS MDH9.2 Q6GKX1 Q6GKX1_ARATH At5g42330 (Uncharacterized protein At5g42330) 23249 At5g42330 (Uncharacterized protein At5g42330) locus:2162266; AT5G42330 NA NA NA NA NA NA NA NA ENOG411E4RR TFCA O04350 TBCA_ARATH Tubulin-folding cofactor A (AtTFCA) (CFA) (Protein KIESEL) (TCP1-chaperonin cofactor A) (Tubulin-specific chaperone A) DISRUPTION PHENOTYPE: Embryo lethality. Embryos consisting of variably enlarged cells with cell-wall stubs. Abnormal microtubule organization. Endosperm indistinguishable from wild-type endosperm in regard to nuclear multiplication and subsequent cellularization. Cells undergoing cytokinesis divide abnormally although they display pheragmoplast microtubules and accumulate KNOLLE in the forming cell plate. {ECO:0000269|PubMed:11959844}. Epidermal pavement cells are strongly reduced in size.,Increase in the frequency of trichomes with more stems.,Leaf architecture is grossly disturbed.,Many cells contain multiple nuclei and nuclear anomalies.,Synergistic phenotype compared to both single mutants.,Compared with wild-type trichomes which normally are three-branched the mutant has trichomes that are either two-branched or unbranched. Trichome stems and trichome branches are reduced in length and the tips often are blunted.,In leaf sections mesophyll cells are frequently highly enlarged with one large nucleus. In some cases the enlarged cells possesse incomplete cell walls and contain several nuclei.,Male and female sterile. Male and female meiosis and/or early stages of gametophytic development are impaired. On the male side the tetrad containing the four meiotic products seem to be normal initially but before the release of the four microspores nuclei appear to be fragmented. This phenotype is not fully penetrant. Approximately 5% of the released microspores are arrested at the binucleate stage and 3% are arrested at the trinucleate stage whereas the remaining microspores have collapsed. A few microspores germinate and form a pollen tube within the anther. On the female side ovule development started normally. However at floral stage 12 when meiosis is completed in the wild type (Schneitz 1995) and embryo sac development has proceeded to the binucleate stage the mutants still lack an embryo sac.,No cell division defects are found in the root.,Root cortical cells and epidermal hypocotyl cells of the mutant are indistinguishable from the wild type under normal growth conditions.,Whereas under normal light conditions wild-type and mutant hypocotyls are similar in length. However in the dark hypocotyl elongation is much reduced in the mutants compared with the wild type. Epidermal hypocotyl cells are bulged and short indicating that they have lost growth polarity. Embryo defective; Enlarged embryo cells and endosperm nuclei-U. Mayer-2002 FUNCTION: Tubulin-folding protein involved in the control of the alpha-/beta-tubulin monomer balance. Function as a reservoir of bound and non-toxic beta-tubulin. Required in the developing embryo. {ECO:0000269|PubMed:11959844, ECO:0000269|PubMed:12215519}. 12824 Tubulin-folding cofactor A (AtTFCA) (CFA) (Protein KIESEL) (TCP1-chaperonin cofactor A) (Tubulin-specific chaperone A) cytosol [GO:0005829]; beta-tubulin binding [GO:0048487]; post-chaperonin tubulin folding pathway [GO:0007023]; tubulin complex assembly [GO:0007021] TISSUE SPECIFICITY: Expressed in leaves, roots, flowers and stems. {ECO:0000269|PubMed:12215519}. locus:2064367; AT2G30410 Tubulin-specific chaperone Tubulin-specific chaperone A Q6K6A7 Q6K6A7_ORYSJ P0643F09.19-2 Os02g0816500 OSNPB_020816500 ENOG411E6B2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os03g0829466 protein A0A0N7KIB9 A0A0N7KIB9_ORYSJ Os03g0829466 OSNPB_030829466 ENOG411E4RY ATHM2 O48737,Q9SEU8,Q9SEU6,F4JG94 TRXM1_ARATH,TRXM2_ARATH,TRXM4_ARATH,F4JG94_ARATH Thioredoxin M1, chloroplastic (AtTrxm1),Thioredoxin M2, chloroplastic (AtTrxm2),Thioredoxin M4, chloroplastic (AtTrxm4),Thioredoxin superfamily protein FUNCTION: Thiol-disulfide oxidoreductase involved in the redox regulation of enzymes of both reductive pentose phosphate pathway (Calvin-Benson cycle) and oxidative pentose phosphate pathway. Under reducing conditions, activates the glyceraldehyde-3-phosphate dehydrogenase and the phosphoribulokinase, and inhibits. the glucose-6-phosphate dehydrogenase. Activates NADP-malate dehydrogenase. {ECO:0000269|PubMed:19631646, ECO:0000269|PubMed:19825612}.,FUNCTION: Thiol-disulfide oxidoreductase that may participate in various redox reactions. May activate NADP-malate dehydrogenase.,FUNCTION: Thiol-disulfide oxidoreductase involved in the redox regulation of enzyme of the oxidative pentose phosphate pathway. Under reducing conditions, inhibits the glucose-6-phosphate dehydrogenase. {ECO:0000269|PubMed:19631646}. 19665,20312,21172,7926 Thioredoxin M1, chloroplastic (AtTrxm1),Thioredoxin M2, chloroplastic (AtTrxm2),Thioredoxin M4, chloroplastic (AtTrxm4),Thioredoxin superfamily protein apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; stromule [GO:0010319]; thylakoid [GO:0009579]; enzyme activator activity [GO:0008047]; enzyme inhibitor activity [GO:0004857]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; negative regulation of catalytic activity [GO:0043086]; positive regulation of catalytic activity [GO:0043085]; regulation of carbohydrate metabolic process [GO:0006109]; response to cold [GO:0009409],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytosol [GO:0005829]; thylakoid [GO:0009579]; enzyme activator activity [GO:0008047]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; positive regulation of catalytic activity [GO:0043085],cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; enzyme activator activity [GO:0008047]; enzyme inhibitor activity [GO:0004857]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein domain specific binding [GO:0019904]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; negative regulation of catalytic activity [GO:0043086]; positive regulation of catalytic activity [GO:0043085]; regulation of carbohydrate metabolic process [GO:0006109]; response to cytokinin [GO:0009735],cell [GO:0005623]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; glycerol ether metabolic process [GO:0006662] locus:2020813;,locus:2128756;,locus:2090126; AT1G03680,AT4G03520,AT3G15360 Thioredoxin Thioredoxin M5, chloroplastic (OsTrxm5),Os12g0188700 protein Q9ZP20,A0A0N7KTP4 TRXM5_ORYSJ,A0A0N7KTP4_ORYSJ TRXM Os12g0188700 LOC_Os12g08730,Os12g0188700 OSNPB_120188700 DISRUPTION PHENOTYPE: Semi-dwarf plants with pale-green leaves, abnormal chloroplasts, reduced carotenoid and chlorophyll content and increased hydrogen peroxide levels. {ECO:0000269|PubMed:18723667}. FUNCTION: Thiol-disulfide oxidoreductase probably involved in the redox regulation of chloroplastic enzymes. Required for chloroplast biogenesis and differentiation. Functions as an electron donor for plastidial 2-Cys peroxiredoxins and participates in hydrogen peroxide scavenging system in chloroplasts. Possesses reducing activity towards insulin disulfide bonds. {ECO:0000269|PubMed:18723667}. ENOG411E4RX OHP2 Q9FEC1 OHP2_ARATH Light-harvesting complex-like protein OHP2, chloroplastic (One-helix protein 2) FUNCTION: May play a photoprotective role within PSI in response to light stress. {ECO:0000269|PubMed:12805611}. 18665 Light-harvesting complex-like protein OHP2, chloroplastic (One-helix protein 2) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; response to light intensity [GO:0009642] locus:2008996; AT1G34000 Inherit from euNOG: high light inducible protein Os01g0589800 protein (Fragment) A0A0P0V4P0 A0A0P0V4P0_ORYSJ Os01g0589800 OSNPB_010589800 ENOG411E4RZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HMG-Y-related protein Os08g0428600 protein,Os08g0428800 protein (Putative high mobility group I/Y (HMGI/Y protein)),Os07g0115200 protein (cDNA clone:002-182-E06, full insert sequence),DNA binding protein PF1 (Os09g0402100 protein) (cDNA clone:J013152P07, full insert sequence),Os07g0133050 protein,Os01g0304500 protein (Fragment) Q8H3M1,Q8H3M0,Q8H2P1,Q69MW7,A0A0P0X1Y8,A0A0P0V1G1 Q8H3M1_ORYSJ,Q8H3M0_ORYSJ,Q8H2P1_ORYSJ,Q69MW7_ORYSJ,A0A0P0X1Y8_ORYSJ,A0A0P0V1G1_ORYSJ P0479C08.105 Os08g0428600 OJ1663_D06.27 OSNPB_080428600,P0479C08.106 Os08g0428800 OJ1663_D06.28 OSNPB_080428800,OJ1138_B05.113 Os07g0115200 OSNPB_070115200,Os09g0402100 Os09g0402100 OSJNBb0014M19.7 OSNPB_090402100,Os07g0133050 OSNPB_070133050,Os01g0304500 OSNPB_010304500 ENOG411E4RE Q6NM36,A0A1R7T3H7 Q6NM36_ARATH,A0A1R7T3H7_ARATH At5g20110 (Dynein light chain type 1 family protein),Dynein light chain type 1 family protein 23634,20513 At5g20110 (Dynein light chain type 1 family protein),Dynein light chain type 1 family protein cytoplasmic dynein complex [GO:0005868]; cytoskeletal protein binding [GO:0008092]; dynein intermediate chain binding [GO:0045505]; dynein light intermediate chain binding [GO:0051959]; cilium assembly [GO:0060271]; positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [GO:2000582]; transport along microtubule [GO:0010970],dynein complex [GO:0030286]; microtubule-based process [GO:0007017] locus:2147725; AT5G20110 dynein light chain Dynein light chain-like protein (Os01g0555600 protein) Q8RV44 Q8RV44_ORYSJ Os01g0555600 B1110C07.49 OJ1014_G12.3 OsJ_02203 OSNPB_010555600 ENOG411E4RD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO Os01g0648700 protein (PSTVd RNA-biding protein-like) Q5VQE7 Q5VQE7_ORYSJ Os01g0648700 OJ1316_H05.21 OSNPB_010648700 ENOG411E4RG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0320500 protein A0A0P0WKM0 A0A0P0WKM0_ORYSJ Os05g0320500 OSNPB_050320500 ENOG411E4RF Q9C683 Q9C683_ARATH At1g51080 (Golgin family A protein) (Uncharacterized protein At1g51080) (Uncharacterized protein F23H24.7) 33092 At1g51080 (Golgin family A protein) (Uncharacterized protein At1g51080) (Uncharacterized protein F23H24.7) plastid [GO:0009536] locus:2026021; AT1G51080 NA Expressed protein (Os03g0138900 protein) (Os03g0139000 protein) (cDNA clone:006-202-E02, full insert sequence) (cDNA clone:J033148L04, full insert sequence) Q10S12 Q10S12_ORYSJ Os03g0138900 LOC_Os03g04580 Os03g0139000 OsJ_09340 OSNPB_030138900 ENOG411E4RA ERF7,ERF3 Q9LDE4,O80339 ERF83_ARATH,ERF82_ARATH Ethylene-responsive transcription factor 7 (AtERF7) (Ethylene-responsive element-binding factor 7) (EREBP-7),Ethylene-responsive transcription factor 3 (AtERF3) (Ethylene-responsive element-binding factor 3) (EREBP-3) FUNCTION: Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.,FUNCTION: Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. 26509,25216 Ethylene-responsive transcription factor 7 (AtERF7) (Ethylene-responsive element-binding factor 7) (EREBP-7),Ethylene-responsive transcription factor 3 (AtERF3) (Ethylene-responsive element-binding factor 3) (EREBP-3) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of ethylene-activated signaling pathway [GO:0010105]; transcription, DNA-templated [GO:0006351] locus:2092339;,locus:2008021; AT3G20310,AT1G50640 Transcription factor NA NA NA NA NA NA NA ENOG411E4RC TRM9 Q147G2 Q147G2_ARATH At4g00770 (DUF4378 domain protein) 50572 At4g00770 (DUF4378 domain protein) locus:2134553; AT4G00770 NA NA NA NA NA NA NA NA ENOG411E4RB F28J7.7 Q1PDW9,Q9S799 Q1PDW9_ARATH,Q9S799_ARATH Mitochondrial ribosomal protein L37,F28J7.7 protein (F4P13.29 protein) (Mitochondrial ribosomal protein L37) (Uncharacterized protein At3g01740) 14840,13765 Mitochondrial ribosomal protein L37,F28J7.7 protein (F4P13.29 protein) (Mitochondrial ribosomal protein L37) (Uncharacterized protein At3g01740) ribosome [GO:0005840] locus:2145703;,locus:2082334; AT5G14290,AT3G01740 Ribosomal protein L37 Expressed protein (Os12g0244200 protein) (cDNA clone:J023002G14, full insert sequence) Q2QV44 Q2QV44_ORYSJ LOC_Os12g14080 Os12g0244200 OsJ_35702 OSNPB_120244200 ENOG411E4RM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin Putative glutaredoxin-C14 Q0IMV4 GRC14_ORYSJ GRXC14 Os12g0538600 LOC_Os12g35330 OsJ_36375 FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. ENOG411E4RN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA histone H4 NA NA NA NA NA NA NA ENOG411E4RI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif 2 Protein MEI2-like 6 (OML6) (MEI2-like protein 6) Q652K6 OML6_ORYSJ ML6 Os09g0531200 LOC_Os09g36140 OJ1254_E07.9 ENOG411E4RH F26K9_80 Q9LZK0 Q9LZK0_ARATH Uncharacterized protein At3g62650; F26K9_80 (Uncharacterized protein F26K9_80) 17503 Uncharacterized protein At3g62650; F26K9_80 (Uncharacterized protein F26K9_80) locus:2081650; AT3G62650 NA Os01g0308600 protein Q5JCW0 Q5JCW0_ORYSJ Os01g0308600 Os01g0308600 OSJNBa0008D05.13 OSNPB_010308600 ENOG411E4RK MSF3.12 Q9ZV45,Q8LAK5,A8MRL6 Q9ZV45_ARATH,Q8LAK5_ARATH,A8MRL6_ARATH Putative small nuclear ribonucleoprotein E (Small nuclear ribonucleoprotein family protein),At4g30330 (Small nuclear ribonucleoprotein family protein) (Small nuclear ribonucleoprotein homolog),Small nuclear ribonucleoprotein family protein R-ATH-72163;R-ATH-72165; 10298,10282,9255 Putative small nuclear ribonucleoprotein E (Small nuclear ribonucleoprotein family protein),At4g30330 (Small nuclear ribonucleoprotein family protein) (Small nuclear ribonucleoprotein homolog),Small nuclear ribonucleoprotein family protein cytosol [GO:0005829]; precatalytic spliceosome [GO:0071011]; U1 snRNP [GO:0005685]; U2 snRNP [GO:0005686]; U4 snRNP [GO:0005687]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; viral nucleocapsid [GO:0019013]; spliceosomal snRNP assembly [GO:0000387],precatalytic spliceosome [GO:0071011]; U1 snRNP [GO:0005685]; U2 snRNP [GO:0005686]; U4 snRNP [GO:0005687]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; viral nucleocapsid [GO:0019013]; spliceosomal snRNP assembly [GO:0000387],spliceosomal complex [GO:0005681]; viral nucleocapsid [GO:0019013]; mRNA splicing, via spliceosome [GO:0000398] locus:2053989;,locus:2118781; AT2G18740,AT4G30330 Small nuclear ribonucleoprotein Os02g0126700 protein (Putative small nuclear ribonucleoprotein polypeptide E) (cDNA clone:001-118-E07, full insert sequence) Q6Z2M5 Q6Z2M5_ORYSJ Os02g0126700 Os02g0126700 OsJ_05214 OSNPB_020126700 P0482F12.18 ENOG411E4RJ T3F20.13 Q9LPH1,Q1H563,Q9SHG7 Q9LPH1_ARATH,Q1H563_ARATH,Q9SHG7_ARATH At1g53560 (Ribosomal protein L18ae family) (T3F20.13 protein) (Uncharacterized protein At1g53560) (Uncharacterized protein F22G10.10),At3g14595 (Ribosomal protein L18ae family),At1g17080/F6I1.24 (F20D23.22 protein) (F6I1.24/F6I1.24) (Ribosomal protein L18ae family) 16479,14469,16679 At1g53560 (Ribosomal protein L18ae family) (T3F20.13 protein) (Uncharacterized protein At1g53560) (Uncharacterized protein F22G10.10),At3g14595 (Ribosomal protein L18ae family),At1g17080/F6I1.24 (F20D23.22 protein) (F6I1.24/F6I1.24) (Ribosomal protein L18ae family) integral component of membrane [GO:0016021]; ribosome [GO:0005840]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2024847;,locus:505006347;,locus:2020317; AT1G53560,AT3G14595,AT1G17080 60S ribosomal protein Os05g0564800 protein (Fragment),60S ribosomal protein L18A-like (Os01g0667100 protein) Q0DFX5,Q5QLQ3 Q0DFX5_ORYSJ,Q5QLQ3_ORYSJ Os05g0564800 Os05g0564800 OSNPB_050564800,Os01g0667100 Os01g0667100 OsJ_02941 OSJNBb0063G05.14 OSNPB_010667100 ENOG411EF9E Q9LY56,A0A1I9LL83 YIPL4_ARATH,A0A1I9LL83_ARATH Protein yippee-like At3g55890,Protein yippee-like R-ATH-6798695; 13592,11605 Protein yippee-like At3g55890,Protein yippee-like metal ion binding [GO:0046872] locus:2082053; AT3G55890 yippee family NA NA NA NA NA NA NA ENOG411EEVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA low molecular mass early light-inducible protein HV90 NA NA NA NA NA NA NA ENOG411EMA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat Os03g0738700 protein (Transducin family protein, putative, expressed) (cDNA clone:J023062O11, full insert sequence) Q10D64 Q10D64_ORYSJ Os03g0738700 LOC_Os03g52870 Os03g0738700 OSNPB_030738700 ENOG411EMA8 MPF21.14 Q9FG99 Q9FG99_ARATH Similarity to GTP-binding regulatory protein and WD-repeat protein (Transducin/WD40 repeat-like superfamily protein) 42505 Similarity to GTP-binding regulatory protein and WD-repeat protein (Transducin/WD40 repeat-like superfamily protein) locus:2170061; AT5G50120 WD domain G-beta repeat Os02g0740900 protein (Transducin family protein / WD-40 repeat family protein-like) Q6Z7S5 Q6Z7S5_ORYSJ Os02g0740900 Os02g0740900 OSNPB_020740900 P0516G10.21 ENOG411EEVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:TBC NA NA NA NA NA NA NA ENOG411EMAI CNX3 Q39056 CNX3_ARATH Cyclic pyranopterin monophosphate synthase, mitochondrial (EC 4.6.1.17) (Molybdenum cofactor biosynthesis enzyme CNX3) (Molybdenum cofactor biosynthesis protein C) (Molybdopterin biosynthesis protein CNX3) FUNCTION: Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP). {ECO:0000250|UniProtKB:P0A738}. PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. ARA:AT1G01290-MONOMER;MetaCyc:AT1G01290-MONOMER; 4.6.1.17 29513 Cyclic pyranopterin monophosphate synthase, mitochondrial (EC 4.6.1.17) (Molybdenum cofactor biosynthesis enzyme CNX3) (Molybdenum cofactor biosynthesis protein C) (Molybdopterin biosynthesis protein CNX3) chloroplast [GO:0009507]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; cyclic pyranopterin monophosphate synthase activity [GO:0061799]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777] TISSUE SPECIFICITY: Abundantly expressed in the roots. locus:2035277; AT1G01290 molybdopterin biosynthesis OSJNBa0072F16.9 protein (Os04g0460500 protein) Q7XTF2 Q7XTF2_ORYSJ OSJNBa0072F16.9 Os04g0460500 OSNPB_040460500 ENOG411EMAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0597100 protein (Fragment) A0A0P0X8N3 A0A0P0X8N3_ORYSJ Os07g0597100 OSNPB_070597100 ENOG411EMAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase Os05g0143200 protein A0A0P0WHS5 A0A0P0WHS5_ORYSJ Os05g0143200 OSNPB_050143200 ENOG411EMAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EMAT BTR1 Q9LZ82 BTR1_ARATH Protein BTR1 (Binding to ToMV RNA 1) DISRUPTION PHENOTYPE: Higher accumulation of ToMV in infected leaves. {ECO:0000269|PubMed:18762309}. Increased accumulation of Tobacco and cauliflower mosaic virus coat proteins after innoculation. Susceptible to tobacco mosaic virus-M. Ishikawa-2008 FUNCTION: Negative regulator of tomato mosaic virus (ToMV) multiplication, but has no effect on the multiplication of cucumber mosaic virus (CMV). Limits the spreading of the virus (PubMed:18762309). Isoform BTR1S: binds preferentially and directly to the 5'terminal region of ToMV genomic RNA, and affects the efficiency of translation rather than mRNA stability (PubMed:18762309). {ECO:0000269|PubMed:18762309}. R-ATH-72163; 33821 Protein BTR1 (Binding to ToMV RNA 1) cytoplasm [GO:0005737]; mRNA binding [GO:0003729]; regulation by virus of viral protein levels in host cell [GO:0046719]; response to cytokinin [GO:0009735]; RNA splicing [GO:0008380] TISSUE SPECIFICITY: Expressed in leaves, stems and siliques. {ECO:0000305|PubMed:18762309}. locus:2184362; AT5G04430 KH domain NA NA NA NA NA NA NA ENOG411EMAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formin Homology 2 Domain Formin-like protein 1 (OsFH1) Q8S0F0 FH1_ORYSJ FH1 Os01g0897700 LOC_Os01g67240 P0506A10.7 P0674H09.24 ENOG411EH6E F4JGB0 F4JGB0_ARATH Uncharacterized protein 15421 Uncharacterized protein locus:5019474806; AT4G03728 NA NA NA NA NA NA NA NA ENOG411EH6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA f-box family NA NA NA NA NA NA NA ENOG411EH68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH66 A0A1P8BFJ4,A0A1P8BFQ0 A0A1P8BFJ4_ARATH,A0A1P8BFQ0_ARATH E3 ubiquitin ligase BIG BROTHER-like protein 21408,19381 E3 ubiquitin ligase BIG BROTHER-like protein ligase activity [GO:0016874] Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EEVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L1P family of ribosomal proteins domain containing protein expressed NA NA NA NA NA NA NA ENOG411EH62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEVW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein NA NA NA NA NA NA NA ENOG411E1V4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Expressed protein (Os12g0104700 protein) (cDNA clone:J013106M21, full insert sequence),Os11g0104800 protein Q2QYW3,A0A0P0XXR9 Q2QYW3_ORYSJ,A0A0P0XXR9_ORYSJ LOC_Os12g01380 Os12g0104700 OSNPB_120104700,Os11g0104800 OSNPB_110104800 ENOG411E1V7 MINE1 Q9C4Z7 MINE1_ARATH Cell division topological specificity factor homolog, chloroplastic (AtMinE1) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 12) DISRUPTION PHENOTYPE: Only one or two large plastids (all type of plastid) in each plastid containing cells. Impaired gravitropism of inflorescence stems and hypocotyls, but not of roots. Severe inhibition of plastid division, producing motile disorganized dots and short filaments of FtsZ. {ECO:0000269|PubMed:11975738, ECO:0000269|PubMed:18204083, ECO:0000269|PubMed:19403522, ECO:0000269|PubMed:19966487}. Fewer but enlarged plastids. Contain short FtsZ filaments within a single oversized plastid. Few, large chloroplasts; No other phenotypes detected-R. Itoh-2009 FUNCTION: Acts as a topological specificity factor during plastid division and specify plastid constriction sites. May contribute to gravitropism in stems and hypocotyls. Stimulates MIND1 ATPase activity. In cooperation with MIND1, prevents FtsZ ring formation anywhere outside of the mid-plastids. {ECO:0000269|PubMed:11743109, ECO:0000269|PubMed:11975738, ECO:0000269|PubMed:12029464, ECO:0000269|PubMed:12164807, ECO:0000269|PubMed:16014621, ECO:0000269|PubMed:17855384, ECO:0000269|PubMed:18204083, ECO:0000269|PubMed:19403522, ECO:0000269|PubMed:19966487}. 25748 Cell division topological specificity factor homolog, chloroplastic (AtMinE1) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 12) chloroplast [GO:0009507]; ATPase binding [GO:0051117]; identical protein binding [GO:0042802]; cell division [GO:0051301]; chloroplast fission [GO:0010020]; regulation of barrier septum assembly [GO:0032955] TISSUE SPECIFICITY: Expressed in green tissues, especially at the shoot apex. Also present in leaves, stems, buds, and flowers, especially in sepals, siliques (tip and base), and anthers (mostly in pollen grains). {ECO:0000269|PubMed:11743109, ECO:0000269|PubMed:12029464}. locus:2007171; AT1G69390 cell division topological specificity factor Os12g0498400 protein (Plastid division regulator MinE, putative, expressed) (Putative cell division topological specificity factor) (cDNA clone:001-007-H02, full insert sequence) (cDNA clone:J023038J16, full insert sequence) Q5J6J5 Q5J6J5_ORYSJ minE LOC_Os12g31450 Os12g0498400 OsJ_36172 OSNPB_120498400 ENOG411DZAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity) Flap endonuclease 1-B (FEN-1-B) (EC 3.1.-.-) (Flap structure-specific endonuclease 1-B) (OsFEN-1b),Flap endonuclease 1 (FEN-1) (EC 3.1.-.-) (Flap structure-specific endonuclease 1) Q75LI2,A0A0P0W5N3 FEN12_ORYSJ,A0A0P0W5N3_ORYSJ FEN1B Os03g0834000 LOC_Os03g61820 OsJ_13256 OSJNBa0096I06.25,Os03g0834000 FEN1 OSNPB_030834000 FUNCTION: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity). May be required for cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03140, ECO:0000269|PubMed:14527718}.,FUNCTION: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA. {ECO:0000256|HAMAP-Rule:MF_03140, ECO:0000256|SAAS:SAAS00725765}. ENOG411DZAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II Os10g0390600 protein Q0IXY9 Q0IXY9_ORYSJ Os10g0390600 OSNPB_100390600 ENOG411DZAS RBK2 Q8RXC8,A0A178VI06 RBK2_ARATH,A0A178VI06_ARATH Receptor-like cytosolic serine/threonine-protein kinase RBK2 (EC 2.7.11.1) (Protein ROP BINDING PROTEIN KINASES 2),ROP binding protein kinases 2 2.7.11.1 51419,56823 Receptor-like cytosolic serine/threonine-protein kinase RBK2 (EC 2.7.11.1) (Protein ROP BINDING PROTEIN KINASES 2),ROP binding protein kinases 2 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; GTPase binding [GO:0051020]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2096209; AT3G05140 receptor-like cytosolic serine threonine-protein kinase RBK2-like NA NA NA NA NA NA NA ENOG411DZAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0586700 protein Q0DFJ5 Q0DFJ5_ORYSJ Os05g0586700 Os05g0586700 OSNPB_050586700 ENOG411DZAT SKIP1 Q9FDX1 SKIP1_ARATH F-box protein SKIP1 (SKP1-interacting partner 1) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 34565 F-box protein SKIP1 (SKP1-interacting partner 1) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; protein ubiquitination [GO:0016567] locus:2174398; AT5G57900 F-Box protein Os08g0269800 protein A0A0P0XE15 A0A0P0XE15_ORYSJ Os08g0269800 OSNPB_080269800 ENOG411DZAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox RING-type E3 ubiquitin transferase (EC 2.3.2.27),Os02g0215650 protein Q7XLZ8,A0A0P0VGD5 Q7XLZ8_ORYSJ,A0A0P0VGD5_ORYSJ Os04g0589700 Os04g0589700 OSJNBa0086O06.11 OSNPB_040589700,Os02g0215650 OSNPB_020215650 ENOG411DZAV Q9SU83 Q9SU83_ARATH Alkaline-phosphatase-like family protein (Nucleotide pyrophosphatase-like protein) (EC 3.6.1.9) (Uncharacterized protein At4g29680) ARA:AT4G29680-MONOMER; R-ATH-1660662;R-ATH-196843;R-ATH-6798695;R-ATH-6814848; 3.6.1.9 54678 Alkaline-phosphatase-like family protein (Nucleotide pyrophosphatase-like protein) (EC 3.6.1.9) (Uncharacterized protein At4g29680) integral component of membrane [GO:0016021]; vacuole [GO:0005773]; NADH pyrophosphatase activity [GO:0035529]; metabolic process [GO:0008152] locus:2134453; AT4G29680 ectonucleotide pyrophosphatase phosphodiesterase Os01g0196600 protein (Putative nucleotide diphosphatase) Q7F5L2 Q7F5L2_ORYSJ Os01g0196600 Os01g0196600 OsJ_00737 OSNPB_010196600 P0419B01.3 ENOG411DZAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal recognition particle receptor beta subunit Os03g0191400 protein (Ras-related protein Rab-6A, putative, expressed) Q10QM5 Q10QM5_ORYSJ Os03g0191400 LOC_Os03g09140 OSNPB_030191400 ENOG411DZAX DPB2 Q500V9,A0A1P8BH84 DPB2_ARATH,A0A1P8BH84_ARATH DNA polymerase epsilon subunit B (EC 2.7.7.7) (DNA polymerase II subunit 2) (AtDPB2) (Protein CYCLOPS 2),DNA polymerase epsilon subunit (EC 2.7.7.7) (DNA polymerase II subunit 2) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous, due to embryo development arrested at one-cell stage. {ECO:0000269|PubMed:16212602}. Segregates embryo lethals that arrest at early stages of embryogenesis. Also defective transmission through male and female gametophytes. Embryo defective; Globular-M. Devic-2007 FUNCTION: DNA polymerase II, which participates in chromosomal DNA replication. Required for the timing and determination of cell fate during plant embryogenesis and root pole development, by promoting cell cycle and cell type patterning. Necessary for proper shoot (SAM) and root apical meristem (RAM) functions (By similarity). Is essential to promote the first divisions of the zygote (PubMed:16212602). {ECO:0000250|UniProtKB:F4HW04, ECO:0000269|PubMed:16212602}.,FUNCTION: Participates in DNA repair and in chromosomal DNA replication. {ECO:0000256|PIRNR:PIRNR000799}. R-ATH-174430;R-ATH-68952;R-ATH-68962; 2.7.7.7 59540,56281 DNA polymerase epsilon subunit B (EC 2.7.7.7) (DNA polymerase II subunit 2) (AtDPB2) (Protein CYCLOPS 2),DNA polymerase epsilon subunit (EC 2.7.7.7) (DNA polymerase II subunit 2) epsilon DNA polymerase complex [GO:0008622]; DNA binding [GO:0003677]; DNA polymerase binding [GO:0070182]; DNA-directed DNA polymerase activity [GO:0003887]; cell cycle [GO:0007049]; DNA-dependent DNA replication [GO:0006261]; embryo development ending in seed dormancy [GO:0009793]; error-prone translesion synthesis [GO:0042276]; positive regulation of cell division [GO:0051781],epsilon DNA polymerase complex [GO:0008622]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA-dependent DNA replication [GO:0006261] DEVELOPMENTAL STAGE: During plant development, expressed in the shoot and root meristematic regions, but not inthe meristems in seeds at germination nor in trichomes undergoing endoreduplication. During male gametogenesis, transiently expressed in immature pollen grains at the time of post-meiotic mitosis, but not in the female macrospores at any time of development. Expressed in the embryo sac after fertilization and the in the embryo proper and suspensor cells until the globular stage. At the triangular stage, expressed in the forming shoot apical meristem. {ECO:0000269|PubMed:16212602}. locus:504956460; AT5G22110 DNA polymerase epsilon subunit Os05g0160800 protein (Fragment) A0A0P0WIA1 A0A0P0WIA1_ORYSJ Os05g0160800 OSNPB_050160800 ENOG411DZAZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thaumatin family Os12g0568900 protein (Thaumatin family protein, expressed) (cDNA clone:J013136G04, full insert sequence),Os08g0235183 protein (Fragment) Q2QNE1,A0A0P0XDQ1 Q2QNE1_ORYSJ,A0A0P0XDQ1_ORYSJ LOC_Os12g38120 Os12g0568900 OSNPB_120568900,Os08g0235183 OSNPB_080235183 ENOG411DZAA NPF5.4 Q9M1I2 PTR46_ARATH Protein NRT1/ PTR FAMILY 5.4 (AtNPF5.4) R-ATH-427975;R-ATH-6798695; 62301 Protein NRT1/ PTR FAMILY 5.4 (AtNPF5.4) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:17481610}. locus:1006230253; AT3G54450 peptide nitrate transporter NA NA NA NA NA NA NA ENOG411DZAC A0A1P8AXY3,F4IK40 A0A1P8AXY3_ARATH,F4IK40_ARATH DUF3754 family protein, putative (DUF3754) 74253,79383 DUF3754 family protein, putative (DUF3754) integral component of membrane [GO:0016021] locus:505006322; AT2G46915 Protein of unknown function (DUF3754) Os06g0104000 protein Q5VRG8 Q5VRG8_ORYSJ Os06g0104000 Os06g0104000 OSJNBa0075G19.37 OSNPB_060104000 ENOG411DZAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os06g0524700 protein (Fragment),Expressed protein (Os03g0163200 protein) (cDNA clone:002-147-A12, full insert sequence) Q0DBU9,Q10RD5 Q0DBU9_ORYSJ,Q10RD5_ORYSJ Os06g0524700 Os06g0524700 OSNPB_060524700,Os03g0163200 LOC_Os03g06730 Os03g0163200 OsJ_09516 OSNPB_030163200 ENOG411DZAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF1-related protein kinase regulatory subunit AKIN beta1-like protein (Os07g0687300 protein) (cDNA clone:J023150G03, full insert sequence),Beta subunit 1 of SnRK1 (Os03g0319100 protein) (SNF1-related protein kinase regulatory beta subunit 1, putative, expressed) (cDNA clone:J033066I11, full insert sequence) Q8LIG2,Q18PR9 Q8LIG2_ORYSJ,Q18PR9_ORYSJ OJ1200_C08.125 OJ1150_E04.121 Os07g0687300 OSNPB_070687300,OSKbeta1 Os03g0319100 LOC_Os03g20340 OsJ_10639 OSNPB_030319100 ENOG411DZAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os03g0263400 protein A0A0P0VW13 A0A0P0VW13_ORYSJ Os03g0263400 OSNPB_030263400 ENOG411DZAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os04g0197200 protein Q0JEV4 Q0JEV4_ORYSJ Os04g0197200 Os04g0197200 OsJ_13902 OSNPB_040197200 ENOG411DZAI Q9LT22,F4JCE9 Q9LT22_ARATH,F4JCE9_ARATH AP-5 complex subunit beta-like protein 125263,122279 AP-5 complex subunit beta-like protein AP-type membrane coat adaptor complex [GO:0030119]; endosomal transport [GO:0016197] locus:2092226; AT3G19870 Inherit from euNOG: adaptor-related protein complex 5 beta 1 subunit Os02g0829400 protein Q6K9U0 Q6K9U0_ORYSJ Os02g0829400 Os02g0829400 OJ1124_D06.10 OSNPB_020829400 ENOG411DZAH F4IHN4,A0A1P8B2P2,A0A1P8B2M5 F4IHN4_ARATH,A0A1P8B2P2_ARATH,A0A1P8B2M5_ARATH PLATZ transcription factor family protein 22037,19610,21845 PLATZ transcription factor family protein locus:2057867; AT2G27930 PLATZ transcription factor Os08g0560300 protein,Os02g0193400 protein,Os11g0428700 protein (Fragment) Q0J3P4,A0A0P0VFV9,A0A0P0Y1S9 Q0J3P4_ORYSJ,A0A0P0VFV9_ORYSJ,A0A0P0Y1S9_ORYSJ Os08g0560300 Os08g0560300 OSNPB_080560300,Os02g0193400 OSNPB_020193400,Os11g0428700 OSNPB_110428700 ENOG411DZAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6ER51,Q6ER49 Q6ER51_ORYSJ,Q6ER49_ORYSJ prx30 Os02g0240100 OSJNBa0082C09.13 OSNPB_020240100,prx29 Os02g0240300 OSJNBa0082C09.15 OSNPB_020240300 ENOG411DZAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) Os02g0761300 protein Q6Z6H6 Q6Z6H6_ORYSJ Os02g0761300 OsJ_08474 OSNPB_020761300 P0486G03.4 ENOG411DZAM PAT24 Q52T38 ZDH22_ARATH Protein S-acyltransferase 24 (EC 2.3.1.225) (Ankyrin repeat-containing S-palmitoyltransferase) (Palmitoyltransferase TIP1) (Protein TIP GROWTH DEFECTIVE 1) (AtTIP1) (Zinc finger DHHC domain-containing protein TIP1) DISRUPTION PHENOTYPE: Plants have defects in root hair growth and pollen tube germination. {ECO:0000269|PubMed:16100337, ECO:0000269|PubMed:8022944, ECO:0000269|Ref.6}. Male gametophyte defective; Homozygotes are viable: Semi-dwarf; Small rosette; Reduced male fertility; Late flowering; Early senescence; Short, branched root hairs-S. Ford-1993 FUNCTION: Palmitoyltransferase involved in cell growth regulation. {ECO:0000269|Ref.7}. 2.3.1.225; 2.3.1.225 68234 Protein S-acyltransferase 24 (EC 2.3.1.225) (Ankyrin repeat-containing S-palmitoyltransferase) (Palmitoyltransferase TIP1) (Protein TIP GROWTH DEFECTIVE 1) (AtTIP1) (Zinc finger DHHC domain-containing protein TIP1) cytoplasmic vesicle membrane [GO:0030659]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; acyl binding [GO:0000035]; protein-cysteine S-palmitoyltransferase activity [GO:0019706]; cell tip growth [GO:0009932] TISSUE SPECIFICITY: Expressed in root, leaf, inflorescence stem, pollen and floral tissue. {ECO:0000269|PubMed:16100337, ECO:0000269|PubMed:22968831}. locus:2149309; AT5G20350 S-acyltransferase S-acyltransferase (EC 2.3.1.225) (Palmitoyltransferase) Q67WP3,Q6H885 Q67WP3_ORYSJ,Q6H885_ORYSJ Os06g0644500 Os06g0644500 OsJ_22138 OSNPB_060644500 P0017B12.15,Os02g0184000 Os02g0184000 OJ1572_F02.9 OSNPB_020184000 ENOG411DZAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF740) Os03g0148400 protein (Fragment) Q0DV57 Q0DV57_ORYSJ Os03g0148400 OSNPB_030148400 ENOG411DZA0 TAF15B Q94KD0 TA15B_ARATH Transcription initiation factor TFIID subunit 15b (TBP-associated factor 15b) (AtTAF15b) FUNCTION: TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. {ECO:0000250}. 42316 Transcription initiation factor TFIID subunit 15b (TBP-associated factor 15b) (AtTAF15b) chloroplast [GO:0009507]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:15527982}. locus:2171248; AT5G58470 ZnF_RBZ Os01g0164400 protein A0A0P0UYN0 A0A0P0UYN0_ORYSJ Os01g0164400 OSNPB_010164400 ENOG411DZA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-like DNA-binding domain containing protein, expressed (Os11g0558200 protein) (cDNA clone:002-172-B09, full insert sequence) Q2R2L6 Q2R2L6_ORYSJ Os11g0558200 LOC_Os11g35390 Os11g0558200 OsJ_34262 OSNPB_110558200 ENOG411DZA2 NUDT9 Q8VYR2,A0A1I9LR57,A0A1I9LR60,A0A1I9LR59,A0A1I9LR58,A0A1I9LR56 NUDT9_ARATH,A0A1I9LR57_ARATH,A0A1I9LR60_ARATH,A0A1I9LR59_ARATH,A0A1I9LR58_ARATH,A0A1I9LR56_ARATH Nudix hydrolase 9 (AtNUDT9) (EC 3.6.1.-),Nudix hydrolase homolog 9 FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. {ECO:0000250}. 3.6.1.- 34717,25579,30956,30791,28173,32098 Nudix hydrolase 9 (AtNUDT9) (EC 3.6.1.-),Nudix hydrolase homolog 9 GDP-mannose hydrolase activity [GO:0052751]; metal ion binding [GO:0046872]; cellular response to ammonium ion [GO:0071242],hydrolase activity [GO:0016787] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:15878881}. locus:2075336; AT3G46200 Nudix hydrolase Os05g0117500 protein (Unknow protein) (cDNA clone:J033022H22, full insert sequence) Q5W7C8 Q5W7C8_ORYSJ Os05g0117500 Os05g0117500 OSNPB_050117500 P0496H07.15 ENOG411DZA5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Acyl transferase 7 (OsAT7) (EC 2.3.1.-) Q0DKA5 AT7_ORYSJ AT7 Os05g0179300 LOC_Os05g08640 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have significant reduction of ferulate in leaf cell wall. {ECO:0000269|PubMed:23391577}. FUNCTION: Involved in the incorporation of ferulate into the cell wall. May act as arabinoxylan feruloyl transferase. {ECO:0000269|PubMed:20012086, ECO:0000269|PubMed:23391577}. ENOG411DZA4 DMP9,DMP8 Q9FK96,O80493 DMP9_ARATH,DMP8_ARATH Protein DMP9 (AtDMP9) (Protein DUO1-ACTIVATED UNKNOWN 2),Protein DMP8 (AtDMP8) FUNCTION: Involved in membrane remodeling. {ECO:0000250|UniProtKB:Q9LVF4}. 26539,26544 Protein DMP9 (AtDMP9) (Protein DUO1-ACTIVATED UNKNOWN 2),Protein DMP8 (AtDMP8) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; endomembrane system organization [GO:0010256]; pollen sperm cell differentiation [GO:0048235] TISSUE SPECIFICITY: Restricted to flowers and pollen. {ECO:0000269|PubMed:20712629}.,TISSUE SPECIFICITY: Restricted to flowers. {ECO:0000269|PubMed:20712629}. locus:2164850;,locus:1009023066; AT5G39650,AT1G09157 Protein of unknown function (DUF679) NA NA NA NA NA NA NA ENOG411DZA7 Q0WVE9,A0A1P8ANF6 PLST1_ARATH,A0A1P8ANF6_ARATH Probable plastidic glucose transporter 1,Major facilitator superfamily protein FUNCTION: May be involved in the efflux of glucose towards the cytosol. {ECO:0000250}. R-ATH-189200;R-ATH-196836;R-ATH-422356;R-ATH-5653890;R-ATH-6798695;R-ATH-8981373; 57203,51692 Probable plastidic glucose transporter 1,Major facilitator superfamily protein chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891]; carbohydrate transport [GO:0008643],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2205548; AT1G05030 Plastidic glucose transporter Os09g0394500 protein (cDNA, clone: J065054A13, full insert sequence),Os09g0452300 protein (Fragment) B7F8I2,A0A0P0XML3 B7F8I2_ORYSJ,A0A0P0XML3_ORYSJ Os09g0394500 OSNPB_090394500,Os09g0452300 OSNPB_090452300 ENOG411DZA6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DZA9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0372000 protein (cDNA clone:J023033H05, full insert sequence) (cDNA clone:J023045L06, full insert sequence) Q6I5Q7 Q6I5Q7_ORYSJ Os05g0372000 Os05g0372000 OsJ_18304 OSJNBa0025P09.4 OSNPB_050372000 ENOG411E1VH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Os11g0702300 protein (Zinc finger, C2H2 type family protein) (Zinc finger, C2H2 type, putative),Os05g0114400 protein (Putative C2H2 type zinc finger transcription factor ZFP16) (Putative zinc finger protein) (cDNA clone:002-153-F01, full insert sequence) Q53NL7,Q75L04 Q53NL7_ORYSJ,Q75L04_ORYSJ Os11g0702300 LOC_Os11g47620 Os11g0702300 OSNPB_110702300,Os05g0114400 Os05g0114400 OJ1654_B10.5 OsJ_16882 OSJNBb0041A22.16 OSNPB_050114400 ENOG411E1VJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os06g0212600 protein (Putative xyloglucan fucosyltransferase) Q69TV2 Q69TV2_ORYSJ Os06g0212600 OSNPB_060212600 P0021C04.44 P0701E03.21 ENOG411E1VM TOL5 Q9FFQ0 TOL5_ARATH TOM1-like protein 5 FUNCTION: Might contribute to the loading of the ESCRT machinery. {ECO:0000305|PubMed:16488176}. 49423 TOM1-like protein 5 cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; intracellular protein transport [GO:0006886] TISSUE SPECIFICITY: Preferentially expressed in siliques and cauline leaves. {ECO:0000269|PubMed:24699223}. locus:2160654; AT5G63640 VHS and GAT domain containing protein expressed Os08g0109000 protein Q6ZC73 Q6ZC73_ORYSJ Os08g0109000 Os08g0109000 OsJ_25772 OSNPB_080109000 P0007D08.9 P0450B04.44 ENOG411E1VN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411E1VA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: aspartic Os01g0936900 protein (Putative xylanase inhibitor) Q5JMK2 Q5JMK2_ORYSJ P0504E02.4 Os01g0936900 OSNPB_010936900 ENOG411E1VB Q8RWK5 Q8RWK5_ARATH At1g02870 (Nucleolar-like protein) (Uncharacterized protein At1g02870) 22103 At1g02870 (Nucleolar-like protein) (Uncharacterized protein At1g02870) nucleolus [GO:0005730]; ribosomal large subunit biogenesis [GO:0042273] locus:2024665; AT1G02870 Ribosome biogenesis protein Nop16 Os05g0367100 protein (cDNA clone:002-142-A04, full insert sequence) Q6L594 Q6L594_ORYSJ Os05g0367100 Os05g0367100 OJ1393_A07.4 OSJNBa0090H02.16 OSNPB_050367100 ENOG411E1VC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain containing protein expressed Os01g0224100 protein (Pti6-like) (cDNA clone:002-107-B02, full insert sequence) (cDNA clone:J033015K21, full insert sequence) Q5NAQ6 Q5NAQ6_ORYSJ Os01g0224100 Os01g0224100 OSNPB_010224100 P0417G05.30 P0443E05.47 ENOG411E1VF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription regulatory region sequence-specific DNA binding Homeobox-leucine zipper protein HOX2 (HD-ZIP protein HOX2) (Homeodomain transcription factor HOX2) (OsHox2) Q5VPE3 HOX2_ORYSJ HOX2 Os06g0140700 LOC_Os06g04870 OsJ_019261 OsJ_20069 OSJNBa0041F13.48 FUNCTION: Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. ENOG411E1VG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os05g0410800 protein (Fragment),Os06g0632100 protein Q0DI75,A0A0P0WYZ4 Q0DI75_ORYSJ,A0A0P0WYZ4_ORYSJ Os05g0410800 Os05g0410800 OSNPB_050410800,Os06g0632100 OSNPB_060632100 ENOG411E1VP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein Os08g0388300 protein (Putative disease resistance protein RPM1) (cDNA clone:J033125G18, full insert sequence),Os08g0372700 protein (Putative disease resistance protein RPM1),Os08g0373000 protein,Os08g0388300 protein Q6Z011,Q6ZB32,A0A0P0XFC4,A0A0P0XFG2 Q6Z011_ORYSJ,Q6ZB32_ORYSJ,A0A0P0XFC4_ORYSJ,A0A0P0XFG2_ORYSJ P0473F05.3-1 Os08g0388300 OSNPB_080388300,Os08g0372700 OJ1267_E11.27 OsJ_27099 OSNPB_080372700 P0690C12.7,Os08g0373000 OSNPB_080373000,Os08g0388300 OSNPB_080388300 ENOG411E1VQ LAC2 O81081 LAC2_ARATH Laccase-2 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 2) (Diphenol oxidase 2) (Urishiol oxidase 2) reduced root elongation under PEG-induced dehydration FUNCTION: Lignin degradation and detoxification of lignin-derived products (By similarity). Required for root elongation in dehydration conditions. {ECO:0000250, ECO:0000269|PubMed:16804053}. ARA:AT2G29130-MONOMER; 1.10.3.2 63832 Laccase-2 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 2) (Diphenol oxidase 2) (Urishiol oxidase 2) apoplast [GO:0048046]; copper ion binding [GO:0005507]; hydroquinone:oxygen oxidoreductase activity [GO:0052716]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; lignin catabolic process [GO:0046274]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Ubiquitous and constitutive. {ECO:0000269|PubMed:15940465, ECO:0000269|PubMed:16804053}. locus:2066117; AT2G29130 Multicopper oxidase NA NA NA NA NA NA NA ENOG411E1VU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: F-box and leucine-rich repeat protein Coronatine-insensitive protein homolog 2 (OsCOI2) Q84QA7 COI2_ORYSJ COI2 Os03g0265500 LOC_Os03g15880 OJ1012B02.14 OsJ_10247 FUNCTION: Involved in jasmonate (JA) signaling. Required for jasmonate signaling in plant defense responses (By similarity). Component of SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including TIFY/JAZ family (By similarity). {ECO:0000250|UniProtKB:O04197, ECO:0000250|UniProtKB:Q60EH4}. ENOG411E1VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CAF1 family ribonuclease Os06g0138400 protein (Putative CCR4-associated factor 1) Q5VPG5 Q5VPG5_ORYSJ OSJNBa0041F13.14 Os06g0138400 OSNPB_060138400 ENOG411E6E2 T6J4.11 Q9FX61,F4HQS1,F4HQS0 Q9FX61_ARATH,F4HQS1_ARATH,F4HQS0_ARATH T6J4.11 protein (Uncharacterized protein At1g13360),Uncharacterized protein 21045,19132,21055 T6J4.11 protein (Uncharacterized protein At1g13360),Uncharacterized protein locus:2205324; AT1G13360 Inherit from KOG: PRP4 pre-mRNA processing factor 4 homolog B (yeast) NA NA NA NA NA NA NA ENOG411E9D6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411E6E0 ERF014,ERF012 Q9LPE8,Q9SFE4 ERF14_ARATH,ERF12_ARATH Ethylene-responsive transcription factor ERF014,Ethylene-responsive transcription factor ERF012 (Dehydration response element-binding protein 26) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.,FUNCTION: Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. 23039,25476 Ethylene-responsive transcription factor ERF014,Ethylene-responsive transcription factor ERF012 (Dehydration response element-binding protein 26) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; jasmonic acid and ethylene-dependent systemic resistance [GO:0009861]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of innate immune response [GO:0045088]; regulation of pectin biosynthetic process [GO:1900030]; salicylic acid mediated signaling pathway [GO:0009863]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cellular response to freezing [GO:0071497]; cellular response to heat [GO:0034605]; ethylene-activated signaling pathway [GO:0009873]; positive regulation of transcription, DNA-templated [GO:0045893]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. locus:2194819;,locus:2201103; AT1G44830,AT1G21910 Transcription factor Os02g0767800 protein A0A0P0VPW0 A0A0P0VPW0_ORYSJ Os02g0767800 OSNPB_020767800 ENOG411E9D4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxoglutarate and iron-dependent oxygenase degradation C-term NA NA NA NA NA NA NA ENOG411E9D5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E65X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor Os01g0542700 protein (cDNA clone:002-167-H10, full insert sequence),Os01g0542400 protein Q8RYP6,Q8LHG5 Q8RYP6_ORYSJ,Q8LHG5_ORYSJ Os01g0542700 OSJNBa0062A24.41 OSJNBa0065J17.8 OSNPB_010542700,OSJNBa0062A24.26 Os01g0542400 OSNPB_010542400 ENOG411E65U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0327400 protein A0A0P0WWH2 A0A0P0WWH2_ORYSJ Os06g0327400 OSNPB_060327400 ENOG411E65S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein 1589 of unknown function (A_thal_3526) NA NA NA NA NA NA NA ENOG411E65P Q9C9B1 Q9C9B1_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein F2P9.24) 19881 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein F2P9.24) anchored component of membrane [GO:0031225] locus:2031551; AT1G73890 Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411E65J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0340100 protein A0A0P0VY47 A0A0P0VY47_ORYSJ Os03g0340100 OSNPB_030340100 ENOG411E65K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dof zinc finger protein NA NA NA NA NA NA NA ENOG411E65H HIPP45 B3H6D0,A0A1I9LQU8 HIP45_ARATH,A0A1I9LQU8_ARATH Heavy metal-associated isoprenylated plant protein 45 (AtHIP45),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 19227,16606 Heavy metal-associated isoprenylated plant protein 45 (AtHIP45),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],metal ion binding [GO:0046872]; metal ion transport [GO:0030001] locus:4515103273; AT3G56891 Inherit from KOG: Heavy metal-associated domain containing protein NA NA NA NA NA NA NA ENOG411E65I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EF hand family protein expressed Os12g0138050 protein,Os11g0141400 protein (Fragment) A0A0P0Y6P1,A0A0N7KSE8 A0A0P0Y6P1_ORYSJ,A0A0N7KSE8_ORYSJ Os12g0138050 OSNPB_120138050,Os11g0141400 OSNPB_110141400 ENOG411E65F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA GATA zinc finger family protein (Os03g0145200 protein) (cDNA, clone: J090048J08, full insert sequence),Os10g0458800 protein Q8H036,A0A0P0XV13 Q8H036_ORYSJ,A0A0P0XV13_ORYSJ OJ1172F09.7 LOC_Os03g05160 Os03g0145200 OSNPB_030145200,Os10g0458800 OSNPB_100458800 ENOG411E65D AP22.17 Q9ZPW6,A0A1P8B7I6,A0A1P8AXM0,F4IQI5,F4JQF1 Q9ZPW6_ARATH,A0A1P8B7I6_ARATH,A0A1P8AXM0_ARATH,F4IQI5_ARATH,F4JQF1_ARATH Late embryogenesis abundant domain-containing protein / LEA domain-containing protein (Similar to late embryogenesis abundant proteins),Late embryogenesis abundant (LEA) protein,Late embryogenesis abundant domain-containing protein / LEA domain-containing protein 49838,38746,47442,45405,37959 Late embryogenesis abundant domain-containing protein / LEA domain-containing protein (Similar to late embryogenesis abundant proteins),Late embryogenesis abundant (LEA) protein,Late embryogenesis abundant domain-containing protein / LEA domain-containing protein endoplasmic reticulum [GO:0005783]; vacuole [GO:0005773],endoplasmic reticulum [GO:0005783] locus:2062156;,locus:2115235; AT2G18340,AT4G36600 late embryogenesis abundant NA NA NA NA NA NA NA ENOG411E65B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B Os07g0158500 protein (Fragment) A0A0N7KMY8 A0A0N7KMY8_ORYSJ Os07g0158500 OSNPB_070158500 ENOG411E65C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L33 50S ribosomal protein L33, chloroplastic P0C457 RK33_ORYSJ rpl33 Nip086 ENOG411E65A MTG10.18 Q6NLQ4,Q9FIS3 Q6NLQ4_ARATH,Q9FIS3_ARATH At4g25433 (Peptidoglycan-binding LysM domain-containing protein),At5g62150 (Peptidoglycan-binding LysM domain-containing protein) 12215,11280 At4g25433 (Peptidoglycan-binding LysM domain-containing protein),At5g62150 (Peptidoglycan-binding LysM domain-containing protein) locus:504955292;,locus:2174093; AT4G25433,AT5G62150 Peptidoglycan-binding LysM domain-containing protein OSJNBa0019K04.5 protein (Os04g0572800 protein) Q7XTZ2 Q7XTZ2_ORYSJ Os04g0572800 OsJ_15845 OSJNBa0019K04.5 OSNPB_040572800 ENOG411E658 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0024J22.16 protein (Os04g0308600 protein),OSJNBa0033H08.13 protein (Os04g0309900 protein) Q7X5Y5,Q7XXL6 Q7X5Y5_ORYSJ,Q7XXL6_ORYSJ Os04g0308600 Os04g0308600 OSJNBa0024J22.16 OSNPB_040308600,Os04g0309900 OSJNBa0033H08.13 OSNPB_040309900 ENOG411E659 F4JGT4,Q1G3P2,F4JML6 F4JGT4_ARATH,Q1G3P2_ARATH,F4JML6_ARATH Uncharacterized protein,ATP-dependent caseinolytic protease/crotonase family protein 12865,13750,49705 Uncharacterized protein,ATP-dependent caseinolytic protease/crotonase family protein peptidase activity [GO:0008233] locus:504955272;,locus:4010713799;,locus:4515103407; AT4G07526,AT3G33528,AT4G16807 NA NA NA NA NA NA NA NA ENOG411E656 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: helicase NA NA NA NA NA NA NA ENOG411E657 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim10/DDP family zinc finger Os05g0111100 protein (cDNA, clone: J065147F17, full insert sequence) B7F8R2 B7F8R2_ORYSJ Os05g0111100 Os05g0111100 OSNPB_050111100 ENOG411E654 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0179600 protein Q8H611 Q8H611_ORYSJ Os06g0179600 OsJ_20333 OSJNBa0035I03.19 OSJNBb0019L07.1 OSNPB_060179600 ENOG411E655 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydrophobic protein Hydrophobic protein OSR8 Q9LRI7 OSR8_ORYSJ OSR8 Os09g0558100 LOC_Os09g38560 OJ1065_E04.3 ENOG411E652 Q8LG42,Q8GRX8 Q8LG42_ARATH,Q8GRX8_ARATH At2g37975 (Uncharacterized protein At2g37975) (Yos1-like protein),At3g54082 (Yos1-like protein) 8858,8786 At2g37975 (Uncharacterized protein At2g37975) (Yos1-like protein),At3g54082 (Yos1-like protein) COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum membrane [GO:0005789]; integral component of Golgi membrane [GO:0030173]; ER to Golgi vesicle-mediated transport [GO:0006888] locus:505006304;,locus:4010713831; AT2G37975,AT3G54085 immediate early response 3-interacting protein Os03g0331900 protein (Fragment),Os09g0326850 protein (Fragment) Q0DS61,A0A0P0XK42 Q0DS61_ORYSJ,A0A0P0XK42_ORYSJ Os03g0331900 OSNPB_030331900,Os09g0326850 OSNPB_090326850 ENOG411E653 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0431300 protein (Fragment) Q0JD49 Q0JD49_ORYSJ Os04g0431300 Os04g0431300 OSNPB_040431300 ENOG411E650 Q9SIQ8 Q9SIQ8_ARATH AT2G31490 protein (At2g31490) (Expressed protein) (Neuronal acetylcholine receptor subunit alpha-5) (Uncharacterized protein At2g31490) ARA:AT2G31490-MONOMER;MetaCyc:AT2G31490-MONOMER; 8292 AT2G31490 protein (At2g31490) (Expressed protein) (Neuronal acetylcholine receptor subunit alpha-5) (Uncharacterized protein At2g31490) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; photorespiration [GO:0009853] locus:2061305; AT2G31490 NA Os01g0750800 protein,Os01g0732100 protein (Fragment) Q5JN54,A0A0P0V7T1 Q5JN54_ORYSJ,A0A0P0V7T1_ORYSJ P0046E05.18-1 Os01g0750800 OsJ_03468 OSNPB_010750800,Os01g0732100 OSNPB_010732100 ENOG411E651 Q9FK81 Y5258_ARATH Stress-response A/B barrel domain-containing protein At5g22580 (Uncharacterized protein At5g22580) FUNCTION: Involved in stress response. {ECO:0000305}. 12349 Stress-response A/B barrel domain-containing protein At5g22580 (Uncharacterized protein At5g22580) chloroplast [GO:0009507]; metal ion binding [GO:0046872] locus:2171102; AT5G22580 Dabb Expressed protein (Os11g0150400 protein) (cDNA clone:001-011-H08, full insert sequence) (cDNA clone:J023101N09, full insert sequence),Os11g0150400 protein (Fragment) Q53PY3,A0A0P0XYV0 Q53PY3_ORYSJ,A0A0P0XYV0_ORYSJ Os11g0150400 LOC_Os11g05290 Os11g0150400 OsJ_12918 OSNPB_110150400,Os11g0150400 OSNPB_110150400 ENOG411E6EQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E9DC Q9LF39 Q9LF39_ARATH At5g15430 (Plant calmodulin-binding protein-like protein) (Uncharacterized protein T20K14_40) 53589 At5g15430 (Plant calmodulin-binding protein-like protein) (Uncharacterized protein T20K14_40) calmodulin binding [GO:0005516] locus:2180892; AT5G15430 Plant calmodulin-binding domain NA NA NA NA NA NA NA ENOG411E9DF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PAP associated domain containing NA NA NA NA NA NA NA ENOG411DS9T IMPA9 F4KF65 IMPA9_ARATH Importin subunit alpha-9 (IMPa-9) FUNCTION: Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity). Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium, but is not essential for Agrobacterium-mediated root transformation (PubMed:18836040). {ECO:0000250|UniProtKB:Q96321, ECO:0000269|PubMed:18836040}. 56684 Importin subunit alpha-9 (IMPa-9) cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nuclear localization sequence binding [GO:0008139]; protein transporter activity [GO:0008565]; NLS-bearing protein import into nucleus [GO:0006607] locus:2143423; AT5G03070 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (By similarity) Importin subunit alpha-2 Q9FYP9 IMAP2_ORYSJ Os01g0158000 LOC_Os01g06470 P0011G08.44 FUNCTION: Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. {ECO:0000269|PubMed:11124253}. ENOG411DS9V F18L15.170 Q9SN94,F4J934 Q9SN94_ARATH,F4J934_ARATH AT3g46450/F18L15_170 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) (Uncharacterized protein F18L15.170),SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 55387,56287 AT3g46450/F18L15_170 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) (Uncharacterized protein F18L15.170),SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein integral component of membrane [GO:0016021] locus:2078221; AT3G46450 CRAL TRIO domain containing protein CRAL/TRIO domain containing protein, expressed (Os03g0820900 protein) (cDNA clone:J023118D10, full insert sequence) Q84TA5 Q84TA5_ORYSJ OJ1754_E06.24 LOC_Os03g60610 Os03g0820900 OSNPB_030820900 ENOG411DS9P F4ISY0,A0A1P8AX38 Y2837_ARATH,A0A1P8AX38_ARATH WEB family protein At2g38370,Weak chloroplast movement under blue light protein (DUF827) 58627,60323 WEB family protein At2g38370,Weak chloroplast movement under blue light protein (DUF827) cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2057191; AT2G38370 expressed protein Myosin heavy chain-like (Os07g0677900 protein) (cDNA clone:002-101-B08, full insert sequence),Expressed protein (Os03g0339700 protein) Q7XIW7,Q10LQ3 Q7XIW7_ORYSJ,Q10LQ3_ORYSJ Os07g0677900 Os07g0677900 OJ1409_C08.7 OsJ_25576 OSNPB_070677900,LOC_Os03g22040 Os03g0339700 OSNPB_030339700 ENOG411DS9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0629550 protein (Fragment),Os11g0629582 protein A0A0P0Y4X9,A0A0P0Y512 A0A0P0Y4X9_ORYSJ,A0A0P0Y512_ORYSJ Os11g0629550 OSNPB_110629550,Os11g0629582 OSNPB_110629582 ENOG411DS9S AT4G12700.1,AT2G04280.1 Q9SU16,Q9SI07 Q9SU16_ARATH,Q9SI07_ARATH At4g12700 (Calcium ion-binding protein) (Uncharacterized protein AT4g12700) (Uncharacterized protein T20K18.50),At2g04280 (Calcium ion-binding protein) (Expressed protein) (Uncharacterized protein At2g04280) 63486,64560 At4g12700 (Calcium ion-binding protein) (Uncharacterized protein AT4g12700) (Uncharacterized protein T20K18.50),At2g04280 (Calcium ion-binding protein) (Expressed protein) (Uncharacterized protein At2g04280) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2135773;,locus:2059767; AT4G12700,AT2G04280 NA Expressed protein (Os10g0456400 protein) (cDNA clone:J033071I02, full insert sequence) Q7XDQ5 Q7XDQ5_ORYSJ Os10g0456400 LOC_Os10g31810 Os10g0456400 OSNPB_100456400 ENOG411DS9X CCR4-4 A8MS41,Q9C6U7,A0A1P8AWT0,A0A1P8AWP4,A0A1P8AWP9 CCR4D_ARATH,Q9C6U7_ARATH,A0A1P8AWT0_ARATH,A0A1P8AWP4_ARATH,A0A1P8AWP9_ARATH Carbon catabolite repressor protein 4 homolog 4 (CCR4 homolog 4) (EC 3.1.13.4),DNAse I-like superfamily protein (Uncharacterized protein F27M3_24),DNAse I-like superfamily protein FUNCTION: Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. {ECO:0000250}. 3.1.13.4 47085,32085,35933,47617,32699 Carbon catabolite repressor protein 4 homolog 4 (CCR4 homolog 4) (EC 3.1.13.4),DNAse I-like superfamily protein (Uncharacterized protein F27M3_24),DNAse I-like superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; exoribonuclease activity [GO:0004532]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; protein self-association [GO:0043621]; RNA binding [GO:0003723]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; regulation of circadian rhythm [GO:0042752]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2028611;,locus:2028696; AT1G31500,AT1G31530 Carbon catabolite repressor protein 4 homolog Os05g0389500 protein (cDNA clone:001-039-B12, full insert sequence) (cDNA clone:006-201-H11, full insert sequence) (cDNA clone:J013043C01, full insert sequence),Os05g0389500 protein Q6I5Y3,A0A0P0WLW5 Q6I5Y3_ORYSJ,A0A0P0WLW5_ORYSJ Os05g0389500 Os05g0389500 OJ1562_H01.2 OsJ_18409 OSNPB_050389500,Os05g0389500 OSNPB_050389500 ENOG411DS9Z Q9SYZ7,Q9SYZ8 U496A_ARATH,U496B_ARATH UPF0496 protein At4g34320,UPF0496 protein At4g34330 42054,40457 UPF0496 protein At4g34320,UPF0496 protein At4g34330 integral component of membrane [GO:0016021] locus:2116214;,locus:2116139; AT4G34320,AT4G34330 UPF0496 protein UPF0496 protein 1 Q10QE9 U496A_ORYSJ Os03g0199100 LOC_Os03g10240 OsJ_009426 ENOG411DS9F O65451,Q9XEC5 FB333_ARATH,Q9XEC5_ARATH Probable F-box protein At4g22030,F-box protein with a domain protein (Uncharacterized protein AT4g04480) (Uncharacterized protein T26N6.8) 70092,43962 Probable F-box protein At4g22030,F-box protein with a domain protein (Uncharacterized protein AT4g04480) (Uncharacterized protein T26N6.8) locus:2120668;,locus:2137129; AT4G22030,AT4G04480 F-box protein At4g22030-like F-box-like (Os02g0225900 protein),Os12g0110700 protein (Fragment) Q6H6J8,A0A0P0Y620 Q6H6J8_ORYSJ,A0A0P0Y620_ORYSJ Os02g0225900 OSNPB_020225900 P0495C02.17,Os12g0110700 OSNPB_120110700 ENOG411DS9A EMB2271,YAO Q3MKM6,Q9M0V4 YAOL_ARATH,YAO_ARATH U3 snoRNP-associated protein-like EMB2271 (Protein EMBRYO DEFECTIVE 2271) (Protein YAO-like),U3 snoRNP-associated protein-like YAO DISRUPTION PHENOTYPE: Embryonic lethality. {ECO:0000305|PubMed:20699009}.,DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:20699009}. Distorted Ds segregation and reduced seed set. Defects in embryogenesis embryo sac development and pollen competence. Embryo defective; Cotyledon-D. Meinke-2003,Embryo defective; Male gametophyte defective-Yang-2010 FUNCTION: Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis (By similarity). May function during late embryogenesis (PubMed:20699009). {ECO:0000250|UniProtKB:O43818, ECO:0000250|UniProtKB:Q9M0V4, ECO:0000305|PubMed:20699009}.,FUNCTION: Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis. Plays a critical role in embryo sac development and gametic cell fate. Required for the correct positioning of the first division plane of zygote. May function during early embryogenesis (PubMed:20699009). {ECO:0000250|UniProtKB:O43818, ECO:0000269|PubMed:20699009}. R-ATH-6791226; 53582,56519 U3 snoRNP-associated protein-like EMB2271 (Protein EMBRYO DEFECTIVE 2271) (Protein YAO-like),U3 snoRNP-associated protein-like YAO Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; rRNA processing [GO:0006364],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; acceptance of pollen [GO:0060321]; embryo development ending in seed dormancy [GO:0009793]; embryo sac development [GO:0009553]; rRNA processing [GO:0006364] DEVELOPMENTAL STAGE: Strongly expressed in early embryos and endosperm, but very weakly in globular embryos and further embryo developmental stages. {ECO:0000269|PubMed:20699009}. TISSUE SPECIFICITY: Expressed in tissues with active in cell division such as shoot apexes, root tips, lateral root primordia, embryos, endosperm, pollen grains and embryo sacs. {ECO:0000269|PubMed:20699009}. locus:2127408;,locus:2115984; AT4G21130,AT4G05410 U3 small nucleolar RNA-interacting protein U3 snoRNP-associated protein-like YAOH (Protein YAO homolog) Q75LV5 YAO_ORYSJ Os03g0625900 LOC_Os03g42770 FUNCTION: Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis (By similarity). {ECO:0000250|UniProtKB:O43818, ECO:0000250|UniProtKB:Q9M0V4}. ENOG411DS9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1645) Os06g0215100 protein (cDNA, clone: J090029F19, full insert sequence) A3B9M6 A3B9M6_ORYSJ Os06g0215100 OsJ_20586 OSNPB_060215100 ENOG411DS9M SBT1.4 Q9LVJ1 SBT14_ARATH Subtilisin-like protease SBT1.4 (EC 3.4.21.-) (Subtilase subfamily 1 member 4) (AtSBT1.4) ARA:AT3G14067-MONOMER; 3.4.21.- 81817 Subtilisin-like protease SBT1.4 (EC 3.4.21.-) (Subtilase subfamily 1 member 4) (AtSBT1.4) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; serine-type endopeptidase activity [GO:0004252]; leaf senescence [GO:0010150]; secondary shoot formation [GO:0010223] locus:2087512; AT3G14067 subtilase family Os02g0779200 protein (Putative subtilisin-like proteinase),Os02g0779200 protein (Fragment),Os02g0780101 protein Q6K7G5,A0A0P0VQ78,A0A0P0VQH1 Q6K7G5_ORYSJ,A0A0P0VQ78_ORYSJ,A0A0P0VQH1_ORYSJ Os02g0779200 OJ1293_A01.13 OsJ_08598 OSNPB_020779200,Os02g0779200 OSNPB_020779200,Os02g0780101 OSNPB_020780101 ENOG411DS9N PCMP-H79 Q9M2Y7 PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710 81340 Pentatricopeptide repeat-containing protein At3g49710 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2097365; AT3G49710 Pentatricopeptide repeat-containing protein Os01g0382800 protein A0A0P0V2S2 A0A0P0V2S2_ORYSJ Os01g0382800 OSNPB_010382800 ENOG411DS9I PLT6,PLT3 Q8GXR2,Q9ZNS0 PLT6_ARATH,PLT3_ARATH Probable polyol transporter 6,Probable polyol transporter 3 FUNCTION: Plasma membrane sugar-proton symporter. {ECO:0000250}. 52923,54819 Probable polyol transporter 6,Probable polyol transporter 3 integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428]; lateral root formation [GO:0010311] locus:2115415;,locus:2046333; AT4G36670,AT2G18480 transporter Mannitol transporter, putative, expressed (Os10g0360100 protein) (Putative mannitol transporter protein) (cDNA clone:J023108G21, full insert sequence),Os01g0311300 protein (Fragment) Q8W2W8,Q0JNA4 Q8W2W8_ORYSJ,Q0JNA4_ORYSJ LOC_Os10g21590 Os10g0360100 OSJNBb0076H04.3 OSNPB_100360100,Os01g0311300 Os01g0311300 OSNPB_010311300 ENOG411DS9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S1/P1 Nuclease Os04g0652700 protein,Os04g0652700 protein (Fragment) B9FCW0,A0A0P0WFQ4 B9FCW0_ORYSJ,A0A0P0WFQ4_ORYSJ Os04g0652700 OsJ_16438 OSNPB_040652700,Os04g0652700 OSNPB_040652700 ENOG411DS95 QWRF2,SCO3 Q94AI1,Q8GXD9,A0A1I9LP61 QWRF2_ARATH,SCO3_ARATH,A0A1I9LP61_ARATH QWRF motif-containing protein 2,Protein SNOWY COTYLEDON 3 (QWRF motif-containing protein 1),SNOWY COTYLEDON protein (DUF566) DISRUPTION PHENOTYPE: Embryo lethality. {ECO:0000269|PubMed:20978221}. The sco3-1 mutation alters chloroplast morphology and development reduces chlorophyll accumulation impairs thylakoid formation and photosynthesis in seedlings and results in photoinhibition under extreme CO(2) concentrations in mature leaves. Null: No homozygous mutant plants recovered; Knockdown: Chlorotic cotyledons; Slight delay in growth-B. Pogson-2010 FUNCTION: Probable microtubule-associated peroxisomal protein required for chloroplast biogenesis and for the formation of the prolamellar body and prothylakoids in etioplasts. Not involved in peroxisomal metabolism, including mobilization of storage compounds during germination, fatty acid beta-oxydation or photorespiration. 71534,70365,65197 QWRF motif-containing protein 2,Protein SNOWY COTYLEDON 3 (QWRF motif-containing protein 1),SNOWY COTYLEDON protein (DUF566) peroxisome [GO:0005777]; chloroplast organization [GO:0009658] TISSUE SPECIFICITY: Expressed in young developing tissues, such as seedlings, roots, flowers, buds and young siliques, and to a lesser extent in mature green tissues. {ECO:0000269|PubMed:20978221}. locus:2007233;,locus:2091166; AT1G49890,AT3G19570 expressed protein Expressed protein (Os03g0762900 protein),Expressed protein (Os10g0345600 protein) (cDNA clone:J023043O20, full insert sequence),Os10g0345701 protein (Fragment) Q10ES5,Q339L3,A0A0P0XT11 Q10ES5_ORYSJ,Q339L3_ORYSJ,A0A0P0XT11_ORYSJ LOC_Os03g55470 Os03g0762900 OSNPB_030762900,LOC_Os10g20510 Os10g0345600 OSNPB_100345600,Os10g0345701 OSNPB_100345701 ENOG411DS91 ABCA1 Q84M24,F4IKZ5 AB1A_ARATH,F4IKZ5_ARATH ABC transporter A family member 1 (ABC transporter ABCA.1) (AtABCA1) (ABC one homolog protein 1) (AtAOH1),ATP-binding cassette A1 ARA:AT2G41700-MONOMER; R-ATH-1369062;R-ATH-2453902;R-ATH-382556;R-ATH-5683826;R-ATH-6798695;R-ATH-8963896; 209064,205148 ABC transporter A family member 1 (ABC transporter ABCA.1) (AtABCA1) (ABC one homolog protein 1) (AtAOH1),ATP-binding cassette A1 integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; lipid transport [GO:0006869],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] locus:2054366; AT2G41700 ABC transporter A family member NA NA NA NA NA NA NA ENOG411DS98 HSP70-18,HSP70-3,MED37C,MED37E,MED37D,HSC70-1 Q9C7X7,O65719,Q9LHA8,P22953,P22954,F4KCE5 HSP7N_ARATH,HSP7C_ARATH,MD37C_ARATH,MD37E_ARATH,MD37D_ARATH,F4KCE5_ARATH Heat shock 70 kDa protein 18 (Heat shock protein 70-18) (AtHsp70-18) (Heat-shock protein 70T-1),Heat shock 70 kDa protein 3 (Heat shock cognate 70 kDa protein 3) (Heat shock cognate protein 70-3) (AtHsc70-3) (Heat shock protein 70-3) (AtHsp70-3),Probable mediator of RNA polymerase II transcription subunit 37c (Heat shock 70 kDa protein 4) (Heat shock cognate 70 kDa protein 4) (Heat shock cognate protein 70-4) (AtHsc70-4) (Heat shock protein 70-4) (AtHsp70-4),Probable mediator of RNA polymerase II transcription subunit 37e (Heat shock 70 kDa protein 1) (Heat shock cognate 70 kDa protein 1) (Heat shock cognate protein 70-1) (AtHsc70-1) (Heat shock protein 70-1) (AtHsp70-1) (Protein EARLY-RESPONSIVE TO DEHYDRATION 2),Probable mediator of RNA polymerase II transcription subunit 37c (Heat shock 70 kDa protein 2) (Heat shock cognate 70 kDa protein 2) (Heat shock cognate protein 70-2) (AtHsc70-2) (Heat shock protein 70-2) (AtHsp70-2),Heat shock cognate protein 70-1 DISRUPTION PHENOTYPE: Abnormal embryogenesis. Defective seedlings with high levels of reactive oxygen species and monoubiquitinated LHCB4 precursors. {ECO:0000269|PubMed:20028838}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21418353}. FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}.; FUNCTION: ATP-dependent molecular chaperone that assists folding of unfolded or misfolded proteins under stress conditions. Mediates plastid precursor degradation to prevent cytosolic precursor accumulation, together with the E3 ubiquitin-protein ligase CHIP. Recognizes specific sequence motifs in transit peptides and thereby led to precursor degradation through the ubiquitin-proteasome system. Plays a critical role in embryogenesis. {ECO:0000269|PubMed:20028838}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}.; FUNCTION: Heat shock protein probably involved in defense response. Chaperone involved in protein targeting to chloroplasts. May cooperate with SGT1 and HSP90 in R gene-mediated resistance towards the oomycete H.parasitica (downy mildew). Plays a role with WPP-domain proteins in facilitating WIT1 nuclear envelope targeting. {ECO:0000269|PubMed:12805626, ECO:0000269|PubMed:18065690, ECO:0000269|PubMed:19617588}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}.,FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}.; FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. MISCELLANEOUS: Plants overexpressing HSC70-1 show disabled immune responses, enhanced tolerance to heat shock and altered plant growth and development. R-ATH-3371453;R-ATH-3371497;R-ATH-3371568;R-ATH-3371571;R-ATH-6798695;R-ATH-72163;R-ATH-8876725; 68357,71148,71101,71358,71387,57237 Heat shock 70 kDa protein 18 (Heat shock protein 70-18) (AtHsp70-18) (Heat-shock protein 70T-1),Heat shock 70 kDa protein 3 (Heat shock cognate 70 kDa protein 3) (Heat shock cognate protein 70-3) (AtHsc70-3) (Heat shock protein 70-3) (AtHsp70-3),Probable mediator of RNA polymerase II transcription subunit 37c (Heat shock 70 kDa protein 4) (Heat shock cognate 70 kDa protein 4) (Heat shock cognate protein 70-4) (AtHsc70-4) (Heat shock protein 70-4) (AtHsp70-4),Probable mediator of RNA polymerase II transcription subunit 37e (Heat shock 70 kDa protein 1) (Heat shock cognate 70 kDa protein 1) (Heat shock cognate protein 70-1) (AtHsc70-1) (Heat shock protein 70-1) (AtHsp70-1) (Protein EARLY-RESPONSIVE TO DEHYDRATION 2),Probable mediator of RNA polymerase II transcription subunit 37c (Heat shock 70 kDa protein 2) (Heat shock cognate 70 kDa protein 2) (Heat shock cognate protein 70-2) (AtHsc70-2) (Heat shock protein 70-2) (AtHsp70-2),Heat shock cognate protein 70-1 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; ATP binding [GO:0005524]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; nuclear matrix [GO:0016363]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protease binding [GO:0002020]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to karrikin [GO:0080167]; response to virus [GO:0009615],apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ubiquitin protein ligase binding [GO:0031625]; protein ubiquitination [GO:0016567]; regulation of transcription, DNA-templated [GO:0006355]; response to bacterium [GO:0009617]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542]; response to temperature stimulus [GO:0009266]; response to virus [GO:0009615]; transcription, DNA-templated [GO:0006351],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; protease binding [GO:0002020]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to other organism [GO:0098542]; negative regulation of seed germination [GO:0010187]; regulation of transcription, DNA-templated [GO:0006355]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to virus [GO:0009615]; stomatal closure [GO:0090332]; transcription, DNA-templated [GO:0006351],cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; regulation of transcription, DNA-templated [GO:0006355]; response to bacterium [GO:0009617]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to virus [GO:0009615]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524] DEVELOPMENTAL STAGE: Down-regulated during seed maturation. Up-regulated during germination. {ECO:0000269|PubMed:11402207}.,DEVELOPMENTAL STAGE: Up-regulated during seed maturation. {ECO:0000269|PubMed:11402207}.,DEVELOPMENTAL STAGE: Down-regulated during seed maturation. {ECO:0000269|PubMed:11402207}. TISSUE SPECIFICITY: Expressed at a substantial level during normal growth in root, stem, leaf and flower tissues, but not in siliques. {ECO:0000269|PubMed:8049382}. locus:2010713;,locus:2074984;,locus:2101222;,locus:2181833;,locus:2181818; AT1G56410,AT3G09440,AT3G12580,AT5G02500,AT5G02490 Heat shock cognate 70 kDa Heat shock cognate 70 kDa protein, putative, expressed (Os03g0276800 protein) (cDNA clone:002-102-C09, full insert sequence),Heat shock cognate 70 kDa protein 2, putative, expressed (Heat shock protein cognate 70) (Os03g0821100 protein) (cDNA clone:J023030D03, full insert sequence),70 kDa heat shock protein (70kDa heat shock protein) (Os01g0840100 protein) (Putative HSP70) (cDNA, clone: J100050G20, full insert sequence),70 kDa heat shock protein (Heat shock cognate 70 kDa protein, putative, expressed) (Os03g0276500 protein) (cDNA clone:J023139H01, full insert sequence),DnaK-type molecular chaperone hsp70-rice (Heat shock cognate 70 kDa protein, putative, expressed) (Os11g0703900 protein),Os05g0460000 protein (Putative hsp70) (cDNA, clone: J090096I11, full insert sequence),Os12g0569700 protein,Os11g0703900 protein (Fragment) Q10NA5,Q84TA1,Q943K7,Q10NA9,Q53NM9,Q6L509,A0A0P0YBH9,A0A0P0Y5S2 Q10NA5_ORYSJ,Q84TA1_ORYSJ,Q943K7_ORYSJ,Q10NA9_ORYSJ,Q53NM9_ORYSJ,Q6L509_ORYSJ,A0A0P0YBH9_ORYSJ,A0A0P0Y5S2_ORYSJ LOC_Os03g16880 Os03g0276800 OsJ_10332 OSNPB_030276800,OJ1754_E06.25 LOC_Os03g60620 Os03g0821100 OsJ_13143 OSNPB_030821100,Os01g0840100 OsJ_04024 OSNPB_010840100 P0031D11.41 P0408C03.16,Os03g0276500 LOC_Os03g16860 Os03g0276500 OsJ_10329 OSNPB_030276500,Os11g0703900 LOC_Os11g47760 Os11g0703900 OSNPB_110703900,Os05g0460000 Os05g0460000 OJ1281_H05.5 OsJ_18811 OSNPB_050460000,Os12g0569700 OSNPB_120569700,Os11g0703900 OSNPB_110703900 ENOG411DS99 MYH9.9 Q93Y25,Q9ZVW9,Q8LPG3,F4ILE1,F4ILE0 Q93Y25_ARATH,Q9ZVW9_ARATH,Q8LPG3_ARATH,F4ILE1_ARATH,F4ILE0_ARATH Splicing factor, CC1-like protein (Splicing factor-like protein),At2g16940 (Putative splicing factor) (Splicing factor, CC1-like protein),Putative splicing factor (Splicing factor, CC1-like protein),Splicing factor, CC1-like protein 59381,63099,45562,68970,67363 Splicing factor, CC1-like protein (Splicing factor-like protein),At2g16940 (Putative splicing factor) (Splicing factor, CC1-like protein),Putative splicing factor (Splicing factor, CC1-like protein),Splicing factor, CC1-like protein nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397],cytosol [GO:0005829]; nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA processing [GO:0006397] locus:2178198;,locus:2039400; AT5G09880,AT2G16940 RNA-binding protein Os10g0439600 protein (Splicing factor, CC1-like family protein, expressed) (cDNA clone:001-019-C07, full insert sequence),Os10g0439600 protein (Fragment),Os03g0153000 protein (Fragment) Q337U3,A0A0N7KRU9,A0A0P0VTH2 Q337U3_ORYSJ,A0A0N7KRU9_ORYSJ,A0A0P0VTH2_ORYSJ Os10g0439600 LOC_Os10g30370 OSNPB_100439600,Os10g0439600 OSNPB_100439600,Os03g0153000 OSNPB_030153000 ENOG411EEI2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EC1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC1R Q5XVJ2,Q5XVJ1,F4I050,B3H7C3 Q5XVJ2_ARATH,Q5XVJ1_ARATH,F4I050_ARATH,B3H7C3_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 37264,37662,36944,27548 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein oxidoreductase activity [GO:0016491] locus:2028486; AT1G48980 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EC1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter NA NA NA NA NA NA NA ENOG411EC1P GGH3 Q9ZV85 GGH3_ARATH Probable gamma-glutamyl hydrolase 3 (AtGGH3) (EC 3.4.19.9) (Conjugase) (GH) (Gamma-Glu-X carboxypeptidase) FUNCTION: Cleaves the polyglutamate sidechains of folate polyglutamates in the vacuole. Is important for polyglutamyl tail length determination before vacuolar exit. Plays a role on folate stability and intracellular folate content (By similarity). {ECO:0000250}. R-ATH-6798695; 3.4.19.9 39882 Probable gamma-glutamyl hydrolase 3 (AtGGH3) (EC 3.4.19.9) (Conjugase) (GH) (Gamma-Glu-X carboxypeptidase) cell wall [GO:0005618]; extracellular space [GO:0005615]; vacuole [GO:0005773]; gamma-glutamyl-peptidase activity [GO:0034722]; tetrahydrofolylpolyglutamate metabolic process [GO:0046900] locus:2037573; AT1G78670 gamma-glutamyl hydrolase 3 NA NA NA NA NA NA NA ENOG411EC1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Vta1 like Os06g0728902 protein (Fragment) A0A0P0X1F9 A0A0P0X1F9_ORYSJ Os06g0728902 OSNPB_060728902 ENOG411EC1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EC1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411EC1Z CRF5 O82339 CRF5_ARATH Ethylene-responsive transcription factor CRF5 (Protein CYTOKININ RESPONSE FACTOR 5) FUNCTION: Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. 33156 Ethylene-responsive transcription factor CRF5 (Protein CYTOKININ RESPONSE FACTOR 5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; embryo development ending in seed dormancy [GO:0009793]; ethylene-activated signaling pathway [GO:0009873]; leaf development [GO:0048366]; transcription factor import into nucleus [GO:0042991]; transcription, DNA-templated [GO:0006351] locus:2062954; AT2G46310 AP2 NA NA NA NA NA NA NA ENOG411EC1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411EC1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC1B UNE12,BHLH7 O22768,Q93Y00,F4HZA7,A0A1P8ASS1 UNE12_ARATH,BH007_ARATH,F4HZA7_ARATH,A0A1P8ASS1_ARATH Transcription factor UNE12 (Basic helix-loop-helix protein 59) (AtbHLH59) (bHLH 59) (Protein UNFERTILIZED EMBRYO SAC 12) (Transcription factor EN 93) (bHLH transcription factor bHLH059),Transcription factor bHLH7 (Basic helix-loop-helix protein 7) (AtbHLH7) (bHLH 7) (Transcription factor EN 92) (bHLH transcription factor bHLH007),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein FUNCTION: Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. 33105,32704,32121,36364 Transcription factor UNE12 (Basic helix-loop-helix protein 59) (AtbHLH59) (bHLH 59) (Protein UNFERTILIZED EMBRYO SAC 12) (Transcription factor EN 93) (bHLH transcription factor bHLH059),Transcription factor bHLH7 (Basic helix-loop-helix protein 7) (AtbHLH7) (bHLH 7) (Transcription factor EN 92) (bHLH transcription factor bHLH007),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; double fertilization forming a zygote and endosperm [GO:0009567]; multicellular organism development [GO:0007275]; regulation of defense response [GO:0031347]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12679534}. locus:2132303;,locus:2007534; AT4G02590,AT1G03040 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EC1A VQ33 Q9FHZ3 VQ33_ARATH VQ motif-containing protein 33 (AtVQ33) (MPK3/6-targeted VQ-motif-containing protein 3) FUNCTION: May modulate WRKY transcription factor activities. {ECO:0000250|UniProtKB:Q9M9F0}. 26919 VQ motif-containing protein 33 (AtVQ33) (MPK3/6-targeted VQ-motif-containing protein 3) nucleus [GO:0005634] locus:2164022; AT5G53830 VQ motif-containing protein NA NA NA NA NA NA NA ENOG411EC1G Q9SH52,Q4PSX8 SPZ1_ARATH,Q4PSX8_ARATH Serpin-Z1 (ArathZ1),Serine protease inhibitor (SERPIN) family protein (Serpin-related) When exposed to MMS mutants grew consistently more vigorously than wild-type. Reduced induction of DNA repair- and cell cycle-related genes. Resistant to genotoxic stress-T. Roberts-2009 FUNCTION: Probable serine protease inhibitor. {ECO:0000250}. 42987,12990 Serpin-Z1 (ArathZ1),Serine protease inhibitor (SERPIN) family protein (Serpin-related) cytosol [GO:0005829]; extracellular space [GO:0005615]; serine-type endopeptidase inhibitor activity [GO:0004867]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281],peptidase activity [GO:0008233] locus:2024532;,locus:2024552; AT1G64030,AT1G64020 SERPIN NA NA NA NA NA NA NA ENOG411EC1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: 26S proteasome non-ATPase regulatory subunit NA NA NA NA NA NA NA ENOG411EC1D CYP709B2,CYP709B1,CYP709B3 F4IK45,Q9ASR3,Q9T093,A0A1P8AZ72,A0A1P8B8D9,F4IK47 C70B2_ARATH,C7091_ARATH,C70B3_ARATH,A0A1P8AZ72_ARATH,A0A1P8B8D9_ARATH,F4IK47_ARATH Cytochrome P450 709B2 (EC 1.14.-.-),Cytochrome P450 709B1 (EC 1.14.-.-),Cytochrome P450 709B3 (EC 1.14.-.-),Cytochrome P450, family 709, subfamily B, polypeptide 2,Cytochrome P450, family 709, subfamily B, polypeptide 3,Cytochrome P450, family 709, subfamily B, polypeptide 1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:24164720}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show increased sensitivity to abscisic acid (ABA) treatment or salt stress. {ECO:0000269|PubMed:24164720}. FUNCTION: Involved in stress response (By similarity). Does not function as cytokinin hydroxylase in yeast heterologous system (Probable). {ECO:0000250|UniProtKB:Q9T093, ECO:0000305|PubMed:15280363}.,FUNCTION: Plays a role in abscisic acid (ABA) and salt stress response. May regulate the salt stress response independently of well-characterized pathways (PubMed:24164720). Does not function as cytokinin hydroxylase in yeast heterologous system (Probable). {ECO:0000269|PubMed:24164720, ECO:0000305|PubMed:15280363}. ARA:AT2G46960-MONOMER;,ARA:AT4G27710-MONOMER; 1.14.-.- 65229,59604,59769,50489,43646,46038 Cytochrome P450 709B2 (EC 1.14.-.-),Cytochrome P450 709B1 (EC 1.14.-.-),Cytochrome P450 709B3 (EC 1.14.-.-),Cytochrome P450, family 709, subfamily B, polypeptide 2,Cytochrome P450, family 709, subfamily B, polypeptide 3,Cytochrome P450, family 709, subfamily B, polypeptide 1 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651],integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] TISSUE SPECIFICITY: Highly expressed in siliques and at lower levels in flowers and rosette leaves. {ECO:0000269|PubMed:24164720}.,TISSUE SPECIFICITY: Highly expressed in siliques. {ECO:0000269|PubMed:24164720}.,TISSUE SPECIFICITY: Highly expressed in rosette leaves and siliques, and at lower levels in flowers. {ECO:0000269|PubMed:24164720}. locus:2041399;,locus:2041389;,locus:2137697; AT2G46950,AT2G46960,AT4G27710 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EC1K O48812 O48812_ARATH Glycosyl hydrolase family 17 protein (Putative beta-1,3-glucanase) ARA:AT2G39640-MONOMER; 59818 Glycosyl hydrolase family 17 protein (Putative beta-1,3-glucanase) anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2039742; AT2G39640 Glycosyl hydrolase family 17 protein NA NA NA NA NA NA NA ENOG411EC1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EC1H ZW9,F12M12_160 Q9SLV3,Q9LX76,Q9LHA6,A0A1I9LN71 Q9SLV3_ARATH,Q9LX76_ARATH,Q9LHA6_ARATH,A0A1I9LN71_ARATH At1g58270/F19C14_8 (F19C14.11 protein) (TRAF-like family protein) (Uncharacterized protein At1g58270) (ZW9 protein),TRAF-like family protein (Uncharacterized protein F12M12_160),AT3g28220/T19D11_3 (TRAF-like family protein),TRAF-like family protein 45036,33425,42887,35762 At1g58270/F19C14_8 (F19C14.11 protein) (TRAF-like family protein) (Uncharacterized protein At1g58270) (ZW9 protein),TRAF-like family protein (Uncharacterized protein F12M12_160),AT3g28220/T19D11_3 (TRAF-like family protein),TRAF-like family protein integral component of membrane [GO:0016021]; plasmodesma [GO:0009506],chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; vacuole [GO:0005773] locus:2016590;,locus:2075321;,locus:2098318; AT1G58270,AT3G46190,AT3G28220 MATH domain NA NA NA NA NA NA NA ENOG411EC1N GPX4 Q8L910 GPX4_ARATH Probable glutathione peroxidase 4 (EC 1.11.1.9) FUNCTION: May constitute a glutathione peroxidase-like protective system against oxidative stresses. {ECO:0000250}. ARA:AT2G48150-MONOMER; R-ATH-2142712; 1.11.1.9 19300 Probable glutathione peroxidase 4 (EC 1.11.1.9) cytosol [GO:0005829]; glutathione peroxidase activity [GO:0004602]; response to oxidative stress [GO:0006979] locus:2039346; AT2G48150 Glutathione peroxidase NA NA NA NA NA NA NA ENOG411EC1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EC13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sulfotransferase domain NA NA NA NA NA NA NA ENOG411EC12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein NA NA NA NA NA NA NA ENOG411EC11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411EC10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyl-ACP thioesterase NA NA NA NA NA NA NA ENOG411EC17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BED zinc finger NA NA NA NA NA NA NA ENOG411EC15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EC14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1719) Os07g0122100 protein,Os07g0121800 protein (Fragment),Os07g0121775 protein,Os07g0121625 protein Q0D8W9,A0A0P0X233,A0A0P0X1S9,A0A0N7KMV3 Q0D8W9_ORYSJ,A0A0P0X233_ORYSJ,A0A0P0X1S9_ORYSJ,A0A0N7KMV3_ORYSJ Os07g0122100 Os07g0122100 OSNPB_070122100,Os07g0121800 OSNPB_070121800,Os07g0121775 OSNPB_070121775,Os07g0121625 OSNPB_070121625 ENOG411EC19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: protein phosphatase 2 regulatory subunit B Os02g0617600 protein A0A0P0VLY7,A0A0N7KFP5,A0A0P0VM41 A0A0P0VLY7_ORYSJ,A0A0N7KFP5_ORYSJ,A0A0P0VM41_ORYSJ Os02g0617600 OSNPB_020617600 ENOG411EC18 Q9C597,A0A1P8BA90 Q9C597_ARATH,A0A1P8BA90_ARATH At5g21900 (DNA excision repair protein) (RNI-like superfamily protein) (Uncharacterized protein At5g21900),RNI-like superfamily protein 61941,50473 At5g21900 (DNA excision repair protein) (RNI-like superfamily protein) (Uncharacterized protein At5g21900),RNI-like superfamily protein locus:504956457; AT5G21900 LRR NA NA NA NA NA NA NA ENOG411E92M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0846400 protein),Os01g0776500 protein,Os03g0109900 protein (Fragment) Q10AN5,B9ETA5,A0A0P0VS29,A0A0P0VS37,A0A0P0VSB8 Q10AN5_ORYSJ,B9ETA5_ORYSJ,A0A0P0VS29_ORYSJ,A0A0P0VS37_ORYSJ,A0A0P0VSB8_ORYSJ LOC_Os03g62910 Os03g0846400 OSNPB_030846400,Os01g0776500 OsJ_03652 OSNPB_010776500,Os03g0109900 OSNPB_030109900 ENOG411E92N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Destabilase NA NA NA NA NA NA NA ENOG411E92H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein NA NA NA NA NA NA NA ENOG411E92I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4Fe-4S iron sulfur cluster binding proteins NifH/frxC family NA NA NA NA NA NA NA ENOG411E92D BEE2 Q93VJ4 BEE2_ARATH Transcription factor BEE 2 (Basic helix-loop-helix protein 58) (AtbHLH58) (bHLH 58) (Protein Brassinosteroid enhanced expression 2) (Transcription factor EN 80) (bHLH transcription factor bHLH058) DISRUPTION PHENOTYPE: No visible phenotype. Redundant with BEE1 and BEE3. {ECO:0000269|PubMed:12454087}. FUNCTION: Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. 34674 Transcription factor BEE 2 (Basic helix-loop-helix protein 58) (AtbHLH58) (bHLH 58) (Protein Brassinosteroid enhanced expression 2) (Transcription factor EN 80) (bHLH transcription factor bHLH058) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. locus:2115200; AT4G36540 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E92E MUL8.5 Q9FLZ7,Q9ZUA6 Q9FLZ7_ARATH,Q9ZUA6_ARATH Curculin-like (Mannose-binding) lectin family protein (Putative S-locus glycoprotein) (Similarity to S60 S-locus receptor kinase),Curculin-like (Mannose-binding) lectin family protein (Putative S-locus glycoprotein) 14901,31398 Curculin-like (Mannose-binding) lectin family protein (Putative S-locus glycoprotein) (Similarity to S60 S-locus receptor kinase),Curculin-like (Mannose-binding) lectin family protein (Putative S-locus glycoprotein) carbohydrate binding [GO:0030246]; kinase activity [GO:0016301],carbohydrate binding [GO:0030246] locus:2175683;,locus:2065460; AT5G39370,AT2G01780 S-locus glycoprotein family NA NA NA NA NA NA NA ENOG411E92F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC1 family NA NA NA NA NA NA NA ENOG411E92G F24K9.4,F24K9.2 Q9C545,Q9CAY6,Q9CAY8 PPR72_ARATH,Q9CAY6_ARATH,Q9CAY8_ARATH Putative pentatricopeptide repeat-containing protein At1g43010,Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein F24K9.4),Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein F24K9.2) 29727,62195,41644 Putative pentatricopeptide repeat-containing protein At1g43010,Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein F24K9.4),Pentatricopeptide repeat (PPR) superfamily protein (Uncharacterized protein F24K9.2) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2009849;,locus:2074668;,locus:2080702; AT1G43010,AT3G11380,AT3G11350 PPR repeat NA NA NA NA NA NA NA ENOG411E92A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BEST Arabidopsis thaliana protein match is protein kinase family protein U-box domain-containing protein (TAIR AT2G45910.1) NA NA NA NA NA NA NA ENOG411E92B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RAP NA NA NA NA NA NA NA ENOG411E92C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA Os09g0481600 protein (Fragment) A0A0P0XPI5 A0A0P0XPI5_ORYSJ Os09g0481600 OSNPB_090481600 ENOG411E92X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin NA NA NA NA NA NA NA ENOG411E92Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PI3K_C2 Os08g0307400 protein (Putative kinase),Os08g0307400 protein Q6UUD9,A0A0P0XEI7,A0A0P0XF38 Q6UUD9_ORYSJ,A0A0P0XEI7_ORYSJ,A0A0P0XF38_ORYSJ Os08g0307400 OSJNBa0024A05.11 OSNPB_080307400,Os08g0307400 OSNPB_080307400 ENOG411E92Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GH3 auxin-responsive promoter Probable indole-3-acetic acid-amido synthetase GH3.7 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 7) (OsGH3-7),Os06g0499500 protein Q654M1,A0A0P0WXA1 GH37_ORYSJ,A0A0P0WXA1_ORYSJ GH3.7 Os06g0499500 LOC_Os06g30440 P0012H03.1-1 P0012H03.1-2 P0596H06.21-1 P0596H06.21-2,Os06g0499500 OSNPB_060499500 FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ENOG411E92T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) NA NA NA NA NA NA NA ENOG411E92U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphate-induced protein 1 conserved region Os06g0220200 protein (Putative phi-1) Q67X72 Q67X72_ORYSJ P0436F11.39 Os06g0220200 OSNPB_060220200 ENOG411E92V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Acid_phosphat_A NA NA NA NA NA NA NA ENOG411E92W Q9FM93 FBD38_ARATH FBD-associated F-box protein At5g56380 49904 FBD-associated F-box protein At5g56380 locus:2161098; AT5G56380 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E92P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF NA NA NA NA NA NA NA ENOG411E92Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E92R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Natural resistance-associated macrophage protein Metal transporter Nramp6,Os03g0607400 protein (Putative metal transporter),Os01g0733001 protein (Fragment),Os03g0606600 protein (Fragment) Q2QN30,Q75I51,A0A0P0V7T8,A0A0P0W028 NRAM6_ORYSJ,Q75I51_ORYSJ,A0A0P0V7T8_ORYSJ,A0A0P0W028_ORYSJ NRAMP6 Os12g0581600 LOC_Os12g39180 OsJ_36661,Os03g0607400 Os03g0607400 Os03g41070 OSNPB_030607400,Os01g0733001 OSNPB_010733001,Os03g0606600 OSNPB_030606600 FUNCTION: Probable metal transporter. {ECO:0000250}. ENOG411E92S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E928 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E925 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E927 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Set and mynd domain containing NA NA NA NA NA NA NA ENOG411E920 Q84WM1 Q84WM1_ARATH At5g44005 11197 At5g44005 plasma membrane [GO:0005886] locus:1006230590; AT5G44005 NA NA NA NA NA NA NA NA ENOG411E921 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PWWP domain NA NA NA NA NA NA NA ENOG411E922 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E923 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411DQBV OVA6 Q9FYR6 SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.15) (Prolyl-tRNA Synthetase 1) (PRORS1) (Prolyl-tRNA synthetase) (ProRS) (Protein OVULE ABORTION 6) DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted ovules. {ECO:0000269|PubMed:16297076}. In heterozygous plants 56% of ovules are aborted compared to 5% in wild type siblings.,Decrease in the abundance of inner membrane complexes of mitochondria.,Light-adapted mutant leaves revealed a decrease in chlorophyll concentration (chlorophyll a/b) a reduction in the chlorophyll a/b ratio and &,Persistent reduction in leaf starch content measured over the course of the day.,Reduced growth rate.,Relative decrease the effective quantum yield of PSII (&,Significant reduction in the maximum quantum yield of PSII (Fv/Fm).,Slight increase in H2O2 levels in light-adapted mutant plants. But no change in dark-adapted plants.,The redox state of the plastoquinone pool measured as 1-qP was increased.,At stage 3-I the early megaspore development and meiosis proceed normally. By contrast at stage 3-VI only ~70% had a normal-looking seven-nuclear embryo sac.,Female gametophyte lethality.,Siliques containing seeds at the globular stage of normal embryo development were found to include small abnormal seeds and aborted ovule-like structures. Ovule abortion; Gametophyte defective; Early embryo defective (inferred)-D. Meinke-2005 FUNCTION: Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). {ECO:0000250|UniProtKB:P16659}. ARA:AT5G52520-MONOMER; 6.1.1.15 60747 Proline--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.15) (Prolyl-tRNA Synthetase 1) (PRORS1) (Prolyl-tRNA synthetase) (ProRS) (Protein OVULE ABORTION 6) aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; proline-tRNA ligase activity [GO:0004827]; embryo sac development [GO:0009553]; plant ovule development [GO:0048481]; prolyl-tRNA aminoacylation [GO:0006433]; regulation of photosynthesis [GO:0010109]; seed development [GO:0048316] locus:2184630; AT5G52520 Prolyl-tRNA Os07g0165000 protein (Fragment) Q0D8E4 Q0D8E4_ORYSJ Os07g0165000 Os07g0165000 OSNPB_070165000 ENOG411EM0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DQBD VPS15 Q9M0E5,A0A1P8B6X9 Q9M0E5_ARATH,A0A1P8B6X9_ARATH Protein kinase family protein / WD-40 repeat family protein (Uncharacterized protein AT4g29380),Protein kinase family protein / WD-40 repeat family protein FUNCTION: Serine/threonine-protein kinase required for cytoplasm to vacuole transport (Cvt) and autophagy as a part of the autophagy-specific VPS34 PI3-kinase complex I (By similarity). Required for pollen development and germination, probably via the modulation of phosphatidylinositol 3-phosphate (PI3P) formation and vacuolar organization (PubMed:21833541, PubMed:22361507). {ECO:0000250|UniProtKB:P22219, ECO:0000269|PubMed:21833541, ECO:0000269|PubMed:22361507}. R-ATH-1632852;R-ATH-1660514;R-ATH-1660516;R-ATH-1660517;R-ATH-5668599; 168124,142053 Protein kinase family protein / WD-40 repeat family protein (Uncharacterized protein AT4g29380),Protein kinase family protein / WD-40 repeat family protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; late endosome [GO:0005770]; nuclear pore [GO:0005643]; nucleus-vacuole junction [GO:0071561]; phosphatidylinositol 3-kinase complex, class III, type I [GO:0034271]; phosphatidylinositol 3-kinase complex, class III, type II [GO:0034272]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; late endosome to vacuole transport [GO:0045324]; macroautophagy [GO:0016236]; pexophagy [GO:0030242]; pollen development [GO:0009555]; pollen germination [GO:0009846]; protein phosphorylation [GO:0006468]; protein targeting to vacuole [GO:0006623],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2118234; AT4G29380 Phosphoinositide 3-kinase regulatory subunit Os02g0796700 protein A0A0N7KG92 A0A0N7KG92_ORYSJ Os02g0796700 OSNPB_020796700 ENOG411DUH8 sgp2,SGP2 Q9LSZ4,Q8LBR4,F4IXP2 Q9LSZ4_ARATH,Q8LBR4_ARATH,F4IXP2_ARATH Monomeric G-protein (Ras-related small GTP-binding family protein),Putative SGP1 monomeric G-protein (Ras-related small GTP-binding family protein),Ras-related small GTP-binding family protein 32865,32808,27935 Monomeric G-protein (Ras-related small GTP-binding family protein),Putative SGP1 monomeric G-protein (Ras-related small GTP-binding family protein),Ras-related small GTP-binding family protein pollen tube tip [GO:0090404]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell cycle [GO:0007049],GTP binding [GO:0005525]; GTPase activity [GO:0003924]; cell cycle [GO:0007049],GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2093019; AT3G21700 septum-promoting GTP-binding protein 1-like NA NA NA NA NA NA NA ENOG411DUH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Os02g0528750 protein,Os02g0528550 protein (Fragment) A0A0P0VJU4,A0A0P0VK18 A0A0P0VJU4_ORYSJ,A0A0P0VK18_ORYSJ Os02g0528750 OSNPB_020528750,Os02g0528550 OSNPB_020528550 ENOG411DUH7 MOCS3,CNX5 Q9ZNW0,A0A1P8B9T0 MOCS3_ARATH,A0A1P8B9T0_ARATH Adenylyltransferase and sulfurtransferase MOCS3 (Molybdenum cofactor synthesis protein 3) [Includes: Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Adenylyltransferase MOCS3) (Sulfur carrier protein MOCS2A adenylyltransferase); Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfur carrier protein MOCS2A sulfurtransferase) (Sulfurtransferase 13) (AtStr13) (Sulfurtransferase MOCS3)],Co-factor for nitrate, reductase and xanthine dehydrogenase 5 FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. {ECO:0000255|HAMAP-Rule:MF_03049}. PATHWAY: tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03049}.; PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03049}. ARA:GQT-2704-MONOMER; R-ATH-947581; 2.7.7.80; 2.8.1.11 50574,39646 Adenylyltransferase and sulfurtransferase MOCS3 (Molybdenum cofactor synthesis protein 3) [Includes: Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Adenylyltransferase MOCS3) (Sulfur carrier protein MOCS2A adenylyltransferase); Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfur carrier protein MOCS2A sulfurtransferase) (Sulfurtransferase 13) (AtStr13) (Sulfurtransferase MOCS3)],Co-factor for nitrate, reductase and xanthine dehydrogenase 5 cytoplasm [GO:0005737]; cytosol [GO:0005829]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; Mo-molybdopterin cofactor sulfurase activity [GO:0008265]; molybdopterin-synthase adenylyltransferase activity [GO:0061605]; molybdopterin-synthase sulfurtransferase activity [GO:0061604]; small protein activating enzyme activity [GO:0008641]; thiosulfate sulfurtransferase activity [GO:0004792]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; tRNA wobble position uridine thiolation [GO:0002143],ATP binding [GO:0005524]; small protein activating enzyme activity [GO:0008641]; transferase activity [GO:0016740] locus:2161635; AT5G55130 Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys) tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP) then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor Adenylyltransferase and sulfurtransferase MOCS3 (Molybdenum cofactor synthesis protein 3) [Includes: Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Adenylyltransferase MOCS3) (Sulfur carrier protein MOCS2A adenylyltransferase); Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfur carrier protein MOCS2A sulfurtransferase) (Sulfurtransferase MOCS3)],Molybdopterin synthase sulphurylase-like (Os02g0525400 protein) (cDNA clone:J013021B13, full insert sequence),Adenylyltransferase and sulfurtransferase MOCS3 (Molybdenum cofactor synthesis protein 3) [Includes: Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Sulfur carrier protein MOCS2A adenylyltransferase) (Adenylyltransferase MOCS3); Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfurtransferase MOCS3) (Sulfur carrier protein MOCS2A sulfurtransferase)] A3ACF3,Q6H7A7,A0A0P0VQU2 MOCS3_ORYSJ,Q6H7A7_ORYSJ,A0A0P0VQU2_ORYSJ MOCS3 CNX5 UBA4 Os02g0804600 LOC_Os02g56050/LOC_Os02g56080 OsJ_008475,Os02g0525400 OSNPB_020525400 P0415B12.32,Os02g0804600 CNX5 MOCS3 UBA4 OSNPB_020804600 FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. {ECO:0000255|HAMAP-Rule:MF_03049}.,FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. {ECO:0000256|HAMAP-Rule:MF_03049}. ENOG411DUH6 CMTA2,CMTA1,EICBP.B Q6NPP4,Q9FY74,A0A1P8BFI4,F4KCL4 CMTA2_ARATH,CMTA1_ARATH,A0A1P8BFI4_ARATH,F4KCL4_ARATH Calmodulin-binding transcription activator 2 (Ethylene-induced calmodulin-binding protein c) (AtER66) (EICBP.c) (Signal-responsive protein 4),Calmodulin-binding transcription activator 1 (Ethylene-induced calmodulin-binding protein b) (EICBP.b) (Signal-responsive protein 2),Ethylene induced calmodulin binding protein FUNCTION: Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.,FUNCTION: Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}. 117258,113853,99411,121074 Calmodulin-binding transcription activator 2 (Ethylene-induced calmodulin-binding protein c) (AtER66) (EICBP.c) (Signal-responsive protein 4),Calmodulin-binding transcription activator 1 (Ethylene-induced calmodulin-binding protein b) (EICBP.b) (Signal-responsive protein 2),Ethylene induced calmodulin binding protein nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001077]; cellular response to aluminum ion [GO:0071275]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409],nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001077]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944],nucleus [GO:0005634]; DNA binding [GO:0003677],nucleus [GO:0005634]; DNA binding [GO:0003677]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; response to freezing [GO:0050826] TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. locus:2173368;,locus:2184737; AT5G64220,AT5G09410 calmodulin-binding transcription activator Os04g0388500 protein,Os01g0923600 protein (Putative ethylene-induced calmodulin-binding protein 4) (cDNA clone:J023002D02, full insert sequence),Os01g0923600 protein (Fragment) Q0JDP3,Q5JJP3,A0A0P0VCH6,A0A0P0VCA3 Q0JDP3_ORYSJ,Q5JJP3_ORYSJ,A0A0P0VCH6_ORYSJ,A0A0P0VCA3_ORYSJ Os04g0388500 Os04g0388500 OSNPB_040388500,B1455F06.32-1 P0592G05.16-1 Os01g0923600 OsJ_04592 OSNPB_010923600,Os01g0923600 OSNPB_010923600 ENOG411DUH1 HSD3,HSD7,HSD4,HSD2,HSD1,HSD5 Q9STY7,Q9LUF2,P0DKC7,Q9STY8,P0DKC6,P0DKC5,Q9T0G0,A0A1P8BF42,A0A1I9LTL0,F4JBH8 HSD3_ARATH,HSD4B_ARATH,HSD4A_ARATH,HSD2_ARATH,HSD1B_ARATH,HSD1A_ARATH,HSD5_ARATH,A0A1P8BF42_ARATH,A0A1I9LTL0_ARATH,F4JBH8_ARATH 11-beta-hydroxysteroid dehydrogenase-like 3 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 3) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 3) (AtHSD3),11-beta-hydroxysteroid dehydrogenase-like 4B (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 4B) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 7) (AtHSD7),11-beta-hydroxysteroid dehydrogenase-like 4A (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 4A) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 4) (AtHSD4),11-beta-hydroxysteroid dehydrogenase-like 2 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 2) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 2) (AtHSD2),11-beta-hydroxysteroid dehydrogenase 1B (EC 1.1.1.146) (17-beta-hydroxysteroid dehydrogenase 1B) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 1) (AtHSD1),11-beta-hydroxysteroid dehydrogenase 1A (EC 1.1.1.146) (17-beta-hydroxysteroid dehydrogenase 1A) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 1) (AtHSD1),11-beta-hydroxysteroid dehydrogenase-like 5 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 5) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 5) (AtHSD5),Hydroxysteroid dehydrogenase 4 (Hydroxysteroid dehydrogenase 7),Hydroxysteroid dehydrogenase 2 DISRUPTION PHENOTYPE: Semidwarf phenotype with reduced sensitivity to brassinosteroids (BRs) and enhanced sensitivity to abscisic acid (ABA) during germination. {ECO:0000269|PubMed:17616511}. FUNCTION: Catalyzes 11-beta, 17-beta-hydroxysteroid and reduces 17-beta-ketosteroids. Involved in regulating plant growth and development, probably promoting or mediating brassinosteroid effects. Plays a role during seed maturation. {ECO:0000269|PubMed:17074428, ECO:0000269|PubMed:17616511, ECO:0000269|PubMed:19542545}. ARA:AT3G47360-MONOMER;,ARA:AT3G47350-MONOMER;,ARA:AT4G10020-MONOMER; R-ATH-194002; 1.1.1.-,1.1.1.146; 1.1.1.- 34947,33248,34684,39087,43442,28020,29873,35716 11-beta-hydroxysteroid dehydrogenase-like 3 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 3) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 3) (AtHSD3),11-beta-hydroxysteroid dehydrogenase-like 4B (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 4B) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 7) (AtHSD7),11-beta-hydroxysteroid dehydrogenase-like 4A (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 4A) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 4) (AtHSD4),11-beta-hydroxysteroid dehydrogenase-like 2 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 2) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 2) (AtHSD2),11-beta-hydroxysteroid dehydrogenase 1B (EC 1.1.1.146) (17-beta-hydroxysteroid dehydrogenase 1B) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 1) (AtHSD1),11-beta-hydroxysteroid dehydrogenase 1A (EC 1.1.1.146) (17-beta-hydroxysteroid dehydrogenase 1A) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 1) (AtHSD1),11-beta-hydroxysteroid dehydrogenase-like 5 (EC 1.1.1.-) (17-beta-hydroxysteroid dehydrogenase-like 5) (EC 1.1.1.-) (Hydroxysteroid dehydrogenase 5) (AtHSD5),Hydroxysteroid dehydrogenase 4 (Hydroxysteroid dehydrogenase 7),Hydroxysteroid dehydrogenase 2 integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; steroid biosynthetic process [GO:0006694],integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; 11-beta-hydroxysteroid dehydrogenase (NADP+) activity [GO:0070524]; steroid biosynthetic process [GO:0006694],integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491],integral component of membrane [GO:0016021] DEVELOPMENTAL STAGE: Firstly detected during early seed maturation, at 9 days after anthesis (DAA), peaking at 18 DAA, before falling sharply during late maturation. {ECO:0000269|PubMed:19542545}. TISSUE SPECIFICITY: Expressed in the above-ground part of seedlings, especially in the vascular tissues. Also detected in the buds and silique pedicels. Highly induced in oil-accumulating tissues of maturing seeds. {ECO:0000269|PubMed:17616511, ECO:0000269|PubMed:19542545}. locus:2099515;,locus:2140553;,locus:2099510; AT3G47360,AT5G50690,AT5G50590,AT3G47350,AT5G50700,AT5G50600,AT4G10020 Dehydrogenase Os03g0842900 protein (Putative oxidoreductase) (Putative steroleosin-B) (Steroleosin-B, putative, expressed),Os12g0464400 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed),Os04g0390800 protein (Fragment) Q75LE3,Q2QRE6,Q0JDN0 Q75LE3_ORYSJ,Q2QRE6_ORYSJ,Q0JDN0_ORYSJ OSJNBa0032G11.2 LOC_Os03g62590 Os03g0842900 OSJNBa0075M12.28 OSNPB_030842900,Os12g0464400 LOC_Os12g27830 OSNPB_120464400,Os04g0390800 Os04g0390800 OSNPB_040390800 ENOG411DUH0 GAUT12 Q9FH36 GAUTC_ARATH Probable galacturonosyltransferase 12 (EC 2.4.1.-) (Like glycosyl transferase 6) (Protein IRREGULAR XYLEM 8) DISRUPTION PHENOTYPE: Severe dwarfing and seedling lethality. Collapsed xylem vessels. Reduced glucuronoxylan and homogalacturonan content in cell wall. {ECO:0000269|PubMed:15980264, ECO:0000269|PubMed:17237350, ECO:0000269|PubMed:17322407, ECO:0000269|PubMed:17944810, ECO:0000269|PubMed:19825675}. The homozygous double mutants progeny were severely dwarfed and sterile. The leaves were dark green indicating an increase in chloroplasts per leaf area of the mutants which was probably due to the reduced cell size. Several double mutant plants were unable to bolt and only grew rosette leaves.,The homozygous mutant progeny are severely deformed and are smaller in size compared with the wild type possibly reflecting a reduction in water transporting ability.,The double mutants had significantly less xylose compared with the irx8 and irx9 single mutant plants. Whereas irx8 and irx9 contain ~40 to 50% xylose compared with the wild type the double mutant contained only ~20% xylose compared with wild-type plants.,Collapsed xylem vessels in roots and stems suggesting a decrease in xylem wall strength in the homozygous mutants.,Homozygous progeny does not produce seeds and has to be propagated as segregants from heterozygous plants.,Immunolabeling of stem and root sections using using monoclonal antibodies specific for glucuronoxylans revealed strong fluorescence signals in the walls of interfascicular fibers and xylem cells in wild-type Arabidopsis but only weak signals were detected in the corresponding tissues of mutant plants.,In the homozygous mutant cell wall decrease of cellulose content (~25%) and notable reduction in xylose in stems and roots (>50%).,In the homozygous mutant stunted growth and smaller leaves siliques and flowers compared with the wild type. Although the leaf size was considerably smaller than the wild-type leaf the trichomes of the mutants were the same size.,In the homozygous mutant uneven distribution of cell wall deposition compared with the wild type. Additionally the region that separates cells consisting of residual primary cell walls is wider and exhibits less contrast in the mutant compared with the WT.,Mature xylem vessels were deformed in the homozygous mutant. However in contrast with irx1 mutants these mutants also exhibited deformations in initiating xylem cells (i.e. the protoxylem cells). In addition the irx8 mutants contain ~50% more xylem cells than wild-type stems at a comparable developmental stage.,The wall thickness of interfascicular fibers and vessels in the stems of the mutants was decreased by ~60% compared with the wild type which is most likely the cause of their reduced stem strength.,Where in wild-type roots xylem files form a closely packed array of cell files leading to the regular occurrence of tripartite cell corners between xylem cell files the central cylinder of homozygous mutant roots was disorganized and the xylem files did not form a closely packed array. As a consequence tripartite xylem cell corners could not be detected in the mutant.,Xylem cells are significantly smaller in the homozygous mutant compared with the wild type. The cell walls surrounding the xylem vessels are also severely reduced in thickness in the mutants.,Although irx8 mutants have significantly reduced xylose levels and seem to be defective in the production of an oligosaccharide leader found on the reducing end of most xylan chains their xylan chains seem to show the normal branching pattern found in wild type xylan chains. However the glucuronic acid found in wild type xylan chains is largely replaced by methylglucuronic acid. irx8 mutants are capable of accumulating cellulose throughout development but they have lower total cellulose levels than wild type plants at middle and late developmental stages. Small leaves, siliques, flowers; Decreased secondary cell wall thickness-C. Somerville-2007 FUNCTION: Involved in pectin assembly and/or distribution, and in the synthesis of secondary wall glucuronoxylan. Probably involved in the synthesis of the glycosyl sequence at the glucuronoxylan reducing end. May be involved in synthesis of a complex glycan primer for xylan synthesis. {ECO:0000269|PubMed:15980264, ECO:0000269|PubMed:17237350, ECO:0000269|PubMed:17322407, ECO:0000269|PubMed:17944810}. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 60880 Probable galacturonosyltransferase 12 (EC 2.4.1.-) (Like glycosyl transferase 6) (Protein IRREGULAR XYLEM 8) Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; glucuronoxylan metabolic process [GO:0010413]; pectin biosynthetic process [GO:0045489]; xylan biosynthetic process [GO:0045492] TISSUE SPECIFICITY: Highly expressed in stems. Detected in roots, inflorescences, siliques, and leaves. Expressed in cells undergoing secondary wall thickening, including interfascicular fibers and primary and secondary xylem. {ECO:0000269|PubMed:17237350, ECO:0000269|PubMed:17322407, ECO:0000269|PubMed:17944810, ECO:0000269|PubMed:19825675}. locus:2157543; AT5G54690 Galacturonosyltransferase NA NA NA NA NA NA NA ENOG411DUH2 PGM Q9LM13,F4I8M8 Q9LM13_ARATH,F4I8M8_ARATH At1g22170 (F16L1.10 protein) (Phosphoglycerate mutase family protein),Phosphoglycerate/bisphosphoglycerate mutase ARA:AT1G22170-MONOMER; R-ATH-6798695;R-ATH-70171;R-ATH-70263; 37295,37216 At1g22170 (F16L1.10 protein) (Phosphoglycerate mutase family protein),Phosphoglycerate/bisphosphoglycerate mutase cytosol [GO:0005829]; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity [GO:0046538]; gluconeogenesis [GO:0006094]; glycolytic process [GO:0006096]; regulation of pentose-phosphate shunt [GO:0043456],plastid [GO:0009536]; phosphoglycerate mutase activity [GO:0004619]; glycolytic process [GO:0006096]; response to nitrate [GO:0010167] locus:2015021;,locus:2029371; AT1G22170,AT1G78050 phosphoglycerate Os02g0751800 protein (Putative phosphoglycerate mutase) (cDNA clone:J033066J07, full insert sequence),Os06g0223200 protein (Fragment) Q6Z8J0,A0A0P0WUJ6 Q6Z8J0_ORYSJ,A0A0P0WUJ6_ORYSJ Os02g0751800 Os02g0751800 OSNPB_020751800 P0431B06.40,Os06g0223200 OSNPB_060223200 ENOG411DUHN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formin-like protein NA NA NA NA NA NA NA ENOG411DUHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor MADS-box transcription factor 4 (OsMADS4),MADS-box transcription factor 2 (NMADS1) (OsMADS2) (RMADS219) Q40703,Q40702 MADS4_ORYSJ,MADS2_ORYSJ MADS4 Os05g0423400 LOC_Os05g34940 OJ1212_B02.5,MADS2 MADS Os01g0883100 LOC_Os01g66030 B1065E10.30 OsJ_04312 FUNCTION: Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}.,FUNCTION: Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. MISCELLANEOUS: Antisense inhibition of MADS4 expression transforms lodicules and stamens into palea/lemma-like and carpel-like organs, respectively. ENOG411DUHK TH2 F4KFT7 TENAC_ARATH Bifunctional TH2 protein, mitochondrial (THIAMINE REQUIRING 2) [Includes: Thiamine phosphate phosphatase (EC 3.1.3.100); Aminopyrimidine aminohydrolase (EC 3.5.99.2)] FUNCTION: May be involved in the salvage of thiamine breakdown products (PubMed:25014715). This protein has a haloacid dehalogenase family domain fused to its TenA domain (PubMed:25014715). Phosphatase with the highest activity against thiamine monophosphate (ThMP) and, with a lower activity, against thiamine diphosphate (ThDP), flavin mononucleotide, inorganic pyrophosphate, CTP and dATP (PubMed:27677881). Has a thiamine salvage hydrolase activity, but only against 4-amino-5-aminomethyl-2-methylpyrimidine (amino-HMP) and not against N-formylamino-HMP, desthiothiamine, thiamine, ThMP, and ThDP (PubMed:27677881). {ECO:0000269|PubMed:27677881, ECO:0000305|PubMed:25014715}. MISCELLANEOUS: Knockdown mutants show reductions in root length and shoot growth. {ECO:0000269|PubMed:27677881}. 3.1.3.100; 3.5.99.2 68964 Bifunctional TH2 protein, mitochondrial (THIAMINE REQUIRING 2) [Includes: Thiamine phosphate phosphatase (EC 3.1.3.100); Aminopyrimidine aminohydrolase (EC 3.5.99.2)] cytosol [GO:0005829]; mitochondrion [GO:0005739]; thiaminase activity [GO:0050334]; thiamine phosphate phosphatase activity [GO:0042131]; thiamine biosynthetic process [GO:0009228] locus:2145816; AT5G32470 TENA/THI-4/PQQC family Os08g0566000 protein Q0J3L2 Q0J3L2_ORYSJ Os08g0566000 Os08g0566000 OSNPB_080566000 ENOG411DUHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) A0A0P0X9R7 A0A0P0X9R7_ORYSJ Os07g0638600 OSNPB_070638600 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. {ECO:0000256|SAAS:SAAS00709921}. ENOG411DUHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dentin sialophosphoprotein-like (Os02g0168300 protein) (cDNA clone:J033125C15, full insert sequence) Q6H4U9 Q6H4U9_ORYSJ Os02g0168300 OsJ_05534 OSJNBa0085K21.54 OSNPB_020168300 P0669G09.8 ENOG411DUHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seems to be involved in regulation of K( ) Na( ) homeostasis. Seems to act as a high-affinity sodium transporter which mediates increased sodium uptake in roots under potassium deficiency and contributes to sodium accumulation and salt toxicity. May also act as a potassium transporter Cation transporter HKT1 (OsHKT1) (Ni-OsHKT1) (Po-OsHKT1),Os06g0701700 protein (Fragment) Q0D9S3,A0A0N7KMP0 HKT1_ORYSJ,A0A0N7KMP0_ORYSJ HKT1 Os06g0701700 LOC_Os06g48810 P0596H10.9,Os06g0701700 OSNPB_060701700 FUNCTION: Seems to be involved in regulation of K(+)/Na(+) homeostasis. Seems to act as a high-affinity sodium transporter, which mediates increased sodium uptake in roots under potassium deficiency and contributes to sodium accumulation and salt toxicity. May also act as a potassium transporter. {ECO:0000269|PubMed:11489190, ECO:0000269|PubMed:11959905, ECO:0000269|PubMed:12795699}. ENOG411DUHA Q9FL41 WTR38_ARATH WAT1-related protein At5g07050 44356 WAT1-related protein At5g07050 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810] locus:2169414; AT5G07050 auxin-induced protein Os05g0409500 protein A0A0P0WMA8 A0A0P0WMA8_ORYSJ Os05g0409500 OSNPB_050409500 ENOG411DUHC F3A4.200,F3A4.230,F11C1_10,F11C1_40 Q45GK4,Q9SN06,Q9SN03,Q9S7S4,Q1PEG7,Q9SNE7,A0A1I9LLH8 Q45GK4_ARATH,Q9SN06_ARATH,Q9SN03_ARATH,Q9S7S4_ARATH,Q1PEG7_ARATH,Q9SNE7_ARATH,A0A1I9LLH8_ARATH Transmembrane protein, putative (DUF247),Transmembrane protein, putative (DUF247) (Uncharacterized protein F3A4.200),Transmembrane protein, putative (DUF247) (Uncharacterized protein F3A4.230),Transmembrane protein, putative (DUF247) (Uncharacterized protein F11C1_10) (Uncharacterized protein F3A4.250),Uncharacterized protein F11C1_40 58678,62312,59388,63146,49956,26697,51964 Transmembrane protein, putative (DUF247),Transmembrane protein, putative (DUF247) (Uncharacterized protein F3A4.200),Transmembrane protein, putative (DUF247) (Uncharacterized protein F3A4.230),Transmembrane protein, putative (DUF247) (Uncharacterized protein F11C1_10) (Uncharacterized protein F3A4.250),Uncharacterized protein F11C1_40 integral component of membrane [GO:0016021] locus:2083138;,locus:2083078;,locus:2083123;,locus:2074755;,locus:2074785; AT3G50160,AT3G50120,AT3G50150,AT3G50170,AT3G50200 UPF0481 protein At3g47200-like OSJNBb0116K07.15 protein (Os04g0505400 protein) (cDNA clone:001-123-D02, full insert sequence) Q7XKP8 Q7XKP8_ORYSJ Os04g0505400 Os04g0505400 OSJNBb0116K07.15 OSNPB_040505400 ENOG411DUHB EMB1895 O49433 O49433_ARATH ARM repeat superfamily protein (Uncharacterized protein AT4g20060) Embryo defective; Globular-D. Meinke-2003 127315 ARM repeat superfamily protein (Uncharacterized protein AT4g20060) integral component of membrane [GO:0016021]; integrator complex [GO:0032039]; embryo development ending in seed dormancy [GO:0009793]; pollen development [GO:0009555]; snRNA 3'-end processing [GO:0034472] locus:2119722; AT4G20060 Inherit from KOG: integrator complex subunit 7 Os01g0188200 protein (cDNA clone:002-100-D10, full insert sequence),Os01g0103700 protein (Fragment) B7EZ59,A0A0P0UXE6 B7EZ59_ORYSJ,A0A0P0UXE6_ORYSJ Os01g0188200 OSNPB_010188200,Os01g0103700 OSNPB_010103700 ENOG411DUHZ MBK20.7 A0A1P8BG39,F4K836 A0A1P8BG39_ARATH,F4K836_ARATH Lipid transporter 60159,70468 Lipid transporter integral component of membrane [GO:0016021]; lipid transporter activity [GO:0005319],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; lipid transporter activity [GO:0005319]; glycolipid translocation [GO:0034203] locus:2160354; AT5G07630 protein RFT1 homolog Os07g0486100 protein A0A0P0X652,A0A0P0X5R2 A0A0P0X652_ORYSJ,A0A0P0X5R2_ORYSJ Os07g0486100 OSNPB_070486100 ENOG411DUHT CXE2 Q9SX78 CXE2_ARATH Probable carboxylesterase 2 (AtCXE2) (EC 3.1.1.1) FUNCTION: Carboxylesterase acting on esters with varying acyl chain length. {ECO:0000250}. ARA:AT1G47480-MONOMER; 3.1.1.1 35255 Probable carboxylesterase 2 (AtCXE2) (EC 3.1.1.1) carboxylic ester hydrolase activity [GO:0052689]; hydrolase activity [GO:0016787]; catabolic process [GO:0009056] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:14738307}. locus:2015413; AT1G47480 Carboxylesterase family Os08g0475400 protein (Putative PrMC3) (cDNA clone:001-030-H02, full insert sequence) (cDNA clone:J033072F03, full insert sequence) Q6ZDG3 Q6ZDG3_ORYSJ Os08g0475400 OJ1111_E05.2 OSNPB_080475400 P0451G12.24 ENOG411DUHW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0429100 protein A0A0P0Y1T7 A0A0P0Y1T7_ORYSJ Os11g0429100 OSNPB_110429100 ENOG411DUHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Constans-like protein co7 Os02g0178100 protein (Fragment) A0A0P0VFH3 A0A0P0VFH3_ORYSJ Os02g0178100 OSNPB_020178100 ENOG411DUHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os04g0584700 protein (Fragment) Q0JAQ2 Q0JAQ2_ORYSJ Os04g0584700 Os04g0584700 OSNPB_040584700 ENOG411DUHP Q8GW22,F4HXR7 Q8GW22_ARATH,F4HXR7_ARATH At1g08850 (Ribosomal L18p/L5e family protein),Ribosomal L18p/L5e family protein 21529,26266 At1g08850 (Ribosomal L18p/L5e family protein),Ribosomal L18p/L5e family protein ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:1005716736; AT1G08845 structural constituent of ribosome NA NA NA NA NA NA NA ENOG411DUHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os01g0389200 protein (cDNA clone:006-206-E03, full insert sequence),Os01g0389700 protein (cDNA clone:002-143-C02, full insert sequence) Q5VNJ2,Q5VNJ6 Q5VNJ2_ORYSJ,Q5VNJ6_ORYSJ Os01g0389200 OJ1123_G09.3 OSNPB_010389200,Os01g0389700 Os01g0389700 OJ1123_G09.11 OsJ_01895 OSNPB_010389700 ENOG411EC2X NHX3,NHX4 Q84WG1,A0A178VAM2,A0A1I9LS49 NHX3_ARATH,A0A178VAM2_ARATH,A0A1I9LS49_ARATH Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3) (NHE-3),Sodium hydrogen exchanger 4 Resistant to salt stress-H. Zhang-2009 FUNCTION: May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. R-ATH-425986; 55606,61135,46121 Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3) (NHE-3),Sodium hydrogen exchanger 4 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; potassium:proton antiporter activity [GO:0015386]; sodium:proton antiporter activity [GO:0015385]; potassium ion homeostasis [GO:0055075]; potassium ion transmembrane transport [GO:0071805]; regulation of intracellular pH [GO:0051453]; response to salt stress [GO:0009651]; sodium ion import across plasma membrane [GO:0098719],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; sodium:proton antiporter activity [GO:0015385]; potassium ion homeostasis [GO:0055075]; regulation of pH [GO:0006885]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12047628}. locus:2081111; AT3G06370 Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411EC2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411DVMZ FKBP16-4 Q9SR70 FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic (PPIase FKBP16-4) (EC 5.2.1.8) (FK506-binding protein 16-4) (AtFKBP16-4) (Immunophilin FKBP16-4) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 24504 Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic (PPIase FKBP16-4) (EC 5.2.1.8) (FK506-binding protein 16-4) (AtFKBP16-4) (Immunophilin FKBP16-4) (Rotamase) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755] locus:2100063; AT3G10060 Peptidyl-prolyl cis-trans isomerase Os07g0188233 protein A0A0P0X385 A0A0P0X385_ORYSJ Os07g0188233 OSNPB_070188233 ENOG411EMKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKZ Q9SX53,A0A1P8ATN7 Q9SX53_ARATH,A0A1P8ATN7_ARATH At1g50380/F14I3_27 (F14I3.4 protein) (Prolyl oligopeptidase family protein),Prolyl oligopeptidase family protein 80939,88201 At1g50380/F14I3_27 (F14I3.4 protein) (Prolyl oligopeptidase family protein),Prolyl oligopeptidase family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008],serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008] locus:2011997; AT1G50380 Prolyl oligopeptidase N-terminal beta-propeller domain Os06g0730600 protein (Putative oligopeptidase B) Q5Z417 Q5Z417_ORYSJ Os06g0730600 B1206D04.9 OSJNBa0069C14.32 OSNPB_060730600 ENOG411EMKY Q9FGD4 Q9FGD4_ARATH Prolyl oligopeptidase family protein (Protease-like) 91001 Prolyl oligopeptidase family protein (Protease-like) cytoplasm [GO:0005737]; membrane [GO:0016020]; serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008] locus:2158098; AT5G66960 Prolyl oligopeptidase N-terminal beta-propeller domain Os09g0453700 protein (Fragment) Q0J1A5 Q0J1A5_ORYSJ Os09g0453700 OSNPB_090453700 ENOG411EMKX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stores iron in a soluble non-toxic readily available form. Important for iron homeostasis (By similarity) NA NA NA NA NA NA NA ENOG411EMKE JGL Q6S592 JGL_ARATH Zinc finger protein JAGGED-like (Zinc finger protein NUBBIN) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. {ECO:0000269|PubMed:16554365}. Strong enhancement of defects in leaf stamen and carpel development compared with jag single mutants.,no visible phenotypic effect FUNCTION: Acts with JAG to promote growth and patterning in stamens and carpels. Promotes the growth of the abaxial and adaxial sides of floral organs. Promotes the growth of the pollen-bearing microsporangia in anthers, the carpel walls of the gynoecium and the establishment of the correct number of cell layers in carpel walls. Promotes leaf blade growth and trichome development. {ECO:0000269|PubMed:16554365}. 23150 Zinc finger protein JAGGED-like (Zinc finger protein NUBBIN) nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; anther development [GO:0048653]; carpel development [GO:0048440]; cell differentiation [GO:0030154]; specification of carpel identity [GO:0010094]; specification of stamen identity [GO:0010097]; stamen development [GO:0048443] TISSUE SPECIFICITY: Expressed in the emerging leaf, stamen and carpel primordia. Not expressed in the apical shoot meristem (SAM). {ECO:0000269|PubMed:14973282, ECO:0000269|PubMed:16554365}. locus:2009952; AT1G13400 ZnF_C2H2 NA NA NA NA NA NA NA ENOG411EMKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411EMK2 Q9FKW2 C3H61_ARATH Zinc finger CCCH domain-containing protein 61 (AtC3H61) Under both FRc and Rc conditions the length of mutant hypocotyls and cotyledon area are similar to that of wild type. 42058 Zinc finger CCCH domain-containing protein 61 (AtC3H61) cytoplasmic stress granule [GO:0010494]; P-body [GO:0000932]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2158685; AT5G44260 zinc finger NA NA NA NA NA NA NA ENOG411EMK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C-x8-C-x5-C-x3-H type (and similar) NA NA NA NA NA NA NA ENOG411EMK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Nad-dependent epimerase dehydratase Os01g0261500 protein (cDNA clone:J033071B09, full insert sequence),Os01g0261500 protein (Fragment) Q5NAS7,A0A0P0V0V1 Q5NAS7_ORYSJ,A0A0P0V0V1_ORYSJ P0699D11.27-1 P0469E09.8-1 Os01g0261500 OSNPB_010261500,Os01g0261500 OSNPB_010261500 ENOG411EMK8 Q943Z4 Q943Z4_ARATH AT3g50560/T20E23_160 (NAD(P)-binding Rossmann-fold superfamily protein) 29346 AT3g50560/T20E23_160 (NAD(P)-binding Rossmann-fold superfamily protein) locus:2098735; AT3G50560 short chain dehydrogenase NA NA NA NA NA NA NA ENOG411DZ69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GTP-binding protein that may be involved in cell development (By similarity) Protein ROOT HAIR DEFECTIVE 3 homolog 2 (EC 3.6.5.-) (Protein SEY1 homolog 3),Os11g0582300 protein Q2R224,A0A0P0Y3W5 RHD32_ORYSJ,A0A0P0Y3W5_ORYSJ Os11g0582300 LOC_Os11g37260 OsJ_34384,Os11g0582300 OSNPB_110582300 FUNCTION: Probable GTP-binding protein that may be involved in cell development. {ECO:0000255|HAMAP-Rule:MF_03109}. ENOG411E0NI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM Chitin elicitor-binding protein (CEBiP) (OsCEBiP) (Lysin motif-containing protein 1) (Os-LYP1),Os11g0548600 protein Q8H8C7,B9GB49 CEBIP_ORYSJ,B9GB49_ORYSJ CEBIP Os03g0133400 LOC_Os03g04110 OJ1006F06.19 OsJ_30068,Os11g0548600 OsJ_34203 OSNPB_110548600 FUNCTION: Chitin elicitor-binding protein involved in the perception and transduction of chitin oligosaccharide elicitor signal for defense responses. {ECO:0000269|PubMed:16829581, ECO:0000269|PubMed:21070404, ECO:0000269|PubMed:22891159}. ENOG411E0ND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family Chitin-inducible gibberellin-responsive protein 2, putative, expressed (Os03g0193000 protein) (cDNA clone:J033041E22, full insert sequence),Os10g0369600 protein (Fragment) Q10QK3,A0A0P0XTB5 Q10QK3_ORYSJ,A0A0P0XTB5_ORYSJ Os03g0193000 LOC_Os03g09280 Os03g0193000 OsJ_09743 OSNPB_030193000,Os10g0369600 OSNPB_100369600 ENOG411E0NG T17F15.190 Q9XIF5,Q9SU57,Q9SY77 Q9XIF5_ARATH,Q9SU57_ARATH,Q9SY77_ARATH DNAJ heat shock family protein (Putative heat shock protein),DNAJ heat shock family protein (Heat shock protein-like protein) (Heat shock-like protein),DNAJ heat shock family protein (F14N23.23) (Putative heat-shock protein) 36612,39027,38757 DNAJ heat shock family protein (Putative heat shock protein),DNAJ heat shock family protein (Heat shock protein-like protein) (Heat shock-like protein),DNAJ heat shock family protein (F14N23.23) (Putative heat-shock protein) unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2825170;,locus:2097880;,locus:2012743; AT1G59725,AT3G47940,AT1G10350 DnaJ heat shock protein NA NA NA NA NA NA NA ENOG411E0NF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats wheat rice and barley. They can account for up to 70 by weight of the wall (By similarity) Probable mixed-linked glucan synthase 8 (EC 2.4.1.-) (1,3;1,4-beta-D-glucan synthase 8) (Cellulose synthase-like protein F8) (OsCslF8),Probable mixed-linked glucan synthase 9 (EC 2.4.1.-) (1,3;1,4-beta-D-glucan synthase 9) (Cellulose synthase-like protein F9) (OsCslF9),Os07g0551600 protein Q84S18,Q7XHV0,A0A0P0X7H6 CSLF8_ORYSJ,CSLF9_ORYSJ,A0A0P0X7H6_ORYSJ CSFL8 Os07g0551700 LOC_Os07g36630 OSJNBb0041B22.114,CSLF9 Os07g0551600 Os07g0551500 LOC_Os07g36610 OSJNBb0041B22.113,Os07g0551600 OSNPB_070551600 FUNCTION: May catalyze both beta-1,3 and beta-1,4 glycosidic linkage on beta-D-glucan. Essential for (1,3;1,4)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats, wheat, rice and barley. They can account for up to 70% by weight of the wall (By similarity). {ECO:0000250}.,FUNCTION: May catalyze both beta-1,3 and beta-1,4 glycosidic linkage on beta-D-glucan. Essential for (1,3;1,4)-beta-D-glucans synthesis in grasses and cereals (Poaceae). The mixed-linked glucans (which are not present in walls of dicotyledons or most other monocotyledonous plants) are particularly important constituents of the walls of the starchy endosperm and aleurone cells of cereal grains such as oats, wheat, rice and barley. They can account for up to 70% by weight of the wall (By similarity). {ECO:0000250, ECO:0000269|PubMed:16574868}. ENOG411E0NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF688) Os01g0829600 protein (cDNA clone:001-031-G10, full insert sequence) Q0JI25 Q0JI25_ORYSJ Os01g0829600 Os01g0829600 OSNPB_010829600 ENOG411E0NB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain containing protein NB-ARC domain containing protein, expressed (Os11g0655300 protein),Os11g0611800 protein,Os11g0655500 protein Q2R086,B9EWV0,Q2R080 Q2R086_ORYSJ,B9EWV0_ORYSJ,Q2R080_ORYSJ Os11g0655300 LOC_Os11g43420 Os11g0655300 OsJ_34692 OSNPB_110655300,Os11g0611800 OsJ_01838 OSNPB_110611800,Os11g0655500 LOC_Os11g43480 OSNPB_110655500 ENOG411E0NX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Phospholipase D alpha 2 (PLD alpha 2) (EC 3.1.4.4) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2),Phospholipase D (EC 3.1.4.4) P93844,Q69X21,Q69X22 PLDA2_ORYSJ,Q69X21_ORYSJ,Q69X22_ORYSJ PLD2 Os06g0604400 LOC_Os06g40190 OsJ_21907 P0481H08.5,Os06g0604300 OsJ_21906 OSNPB_060604300 P0481H08.3,Os06g0604200 OSNPB_060604200 P0481H08.1 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes.,FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. {ECO:0000256|PIRNR:PIRNR036470}. ENOG411E0NW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA L-type lectin-domain containing receptor kinase S.7-like NA NA NA NA NA NA NA ENOG411E0N8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease T2 family Drought-induced S-like ribonuclease (cDNA clone:001-039-G06, full insert sequence) (cDNA clone:001-045-B11, full insert sequence) (cDNA clone:006-301-A06, full insert sequence) (cDNA clone:006-305-E10, full insert sequence) (cDNA clone:006-306-E03, full insert sequence) (cDNA clone:006-307-B06, full insert sequence) (cDNA clone:006-308-G01, full insert sequence) (cDNA clone:006-311-C11, full insert sequence) (cDNA clone:J013057M18, full insert sequence) Q69JX7 Q69JX7_ORYSJ Os09g0537700 OsJ_30152 OSNPB_090537700 P0229B10.16 P0569E11.38 ENOG411E0N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhomboid family Rhomboid-like protein (EC 3.4.21.-) Q7XRW9 Q7XRW9_ORYSJ Os04g0569300 Os04g0569300 OSJNBb0032E06.11 OSNPB_040569300 ENOG411E0N7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E0N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif 2 Protein MEI2-like 5 (OML5) (MEI2-like protein 5) Q6EQX3 OML5_ORYSJ ML5 Os02g0319100 LOC_Os02g21430 OSJNBa0086N11.15 FUNCTION: Probable RNA-binding protein that may play a role in growth regulation. {ECO:0000250}. ENOG411E0N3 F4JY41 F4JY41_ARATH DNAJ heat shock amino-terminal domain protein 60619 DNAJ heat shock amino-terminal domain protein locus:2180069; AT5G18730 CONTAINS InterPro DOMAIN s Molecular chaperone heat shock protein Hsp40 DnaJ (InterPro IPR015609) NA NA NA NA NA NA NA ENOG411EDW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EDW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pept_C1 NA NA NA NA NA NA NA ENOG411EDW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EDW0 PER37,PER38 Q9LDN9,Q9LDA4 PER37_ARATH,PER38_ARATH Peroxidase 37 (Atperox P37) (EC 1.11.1.7) (ATP38),Peroxidase 38 (Atperox P38) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G08770-MONOMER;,ARA:AT4G08780-MONOMER; 1.11.1.7 38203,38086 Peroxidase 37 (Atperox P37) (EC 1.11.1.7) (ATP38),Peroxidase 38 (Atperox P38) (EC 1.11.1.7) extracellular region [GO:0005576]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; negative regulation of growth [GO:0045926]; response to oxidative stress [GO:0006979],extracellular region [GO:0005576]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2138273;,locus:2138278; AT4G08770,AT4G08780 Removal of H(2)O(2) oxidation of toxic reductants biosynthesis and degradation of lignin suberization auxin catabolism response to environmental stresses such as wounding pathogen attack and oxidative stress. These functions might be dependent on each isozyme isoform in each plant tissue NA NA NA NA NA NA NA ENOG411EDW1 CYP705A15,CYP705A4 F4JDH7,Q9LJZ2,Q8L7H7 F4JDH7_ARATH,Q9LJZ2_ARATH,Q8L7H7_ARATH Cytochrome P450, family 705, subfamily A, polypeptide 15,Cytochrome P450, family 705, subfamily A, polypeptide 15 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 4 (Putative cytochrome P450) ARA:AT3G20080-MONOMER;,ARA:AT4G15380-MONOMER; 43768,59358,59246 Cytochrome P450, family 705, subfamily A, polypeptide 15,Cytochrome P450, family 705, subfamily A, polypeptide 15 (Cytochrome P450-like protein),Cytochrome P450, family 705, subfamily A, polypeptide 4 (Putative cytochrome P450) heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2087640;,locus:2130055; AT3G20080,AT4G15380 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411EDW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EDW4 PAT14 Q8VYP5 ZDH14_ARATH Probable protein S-acyltransferase 14 (EC 2.3.1.225) (Probable palmitoyltransferase At3g60800) (Zinc finger DHHC domain-containing protein At3g60800) FUNCTION: Palmitoyl acyltransferase. {ECO:0000250, ECO:0000269|Ref.5}. 2.3.1.225; 2.3.1.225 34688 Probable protein S-acyltransferase 14 (EC 2.3.1.225) (Probable palmitoyltransferase At3g60800) (Zinc finger DHHC domain-containing protein At3g60800) early endosome [GO:0005769]; Golgi apparatus [GO:0005794]; Golgi trans cisterna [GO:0000138]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; protein-cysteine S-acyltransferase activity [GO:0019707]; protein-cysteine S-palmitoyltransferase activity [GO:0019706]; leaf senescence [GO:0010150]; regulation of leaf senescence [GO:1900055]; regulation of reactive oxygen species metabolic process [GO:2000377] locus:2101806; AT3G60800 DHHC palmitoyltransferase NA NA NA NA NA NA NA ENOG411EDWJ PRXIIA Q9SZA6,O82488,Q9LUV7,Q9LIK3,Q9FFS9,Q9ZVI1,Q9LP59,Q9LIL1,Q9FFT0,Q9FH73,Q7G959,Q9M8Y1,Q1PEL9,F4J8W8,F4J465,F4J466,F4J135 FBK91_ARATH,FB229_ARATH,FB175_ARATH,FB178_ARATH,FB278_ARATH,FB323_ARATH,FBK20_ARATH,FBK66_ARATH,FB277_ARATH,FB276_ARATH,PRX2A_ARATH,Q9M8Y1_ARATH,Q1PEL9_ARATH,F4J8W8_ARATH,F4J465_ARATH,F4J466_ARATH,F4J135_ARATH F-box/kelch-repeat protein At4g33290,Putative F-box protein At4g10740,Putative F-box protein At3g22421,Putative F-box protein At3g22940,Putative F-box protein At5g41510,F-box protein At2g38590,F-box/kelch-repeat protein At1g48625,Putative F-box/kelch-repeat protein At3g22870,Putative F-box protein At5g41500,F-box protein At5g41490,Peroxiredoxin-2A (EC 1.11.1.15) (Peroxiredoxin IIA) (Thioredoxin peroxidase 2A),F-box associated ubiquitination effector family protein (F-box family protein-related) (T6K12.13 protein),F-box associated ubiquitination effector family protein (F-box family protein-like protein),F-box associated ubiquitination effector family protein FUNCTION: Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides (By similarity). May be involved in intracellular redox signaling (Probable). {ECO:0000250|UniProtKB:A9PCL4, ECO:0000305|PubMed:15890615}. MISCELLANEOUS: The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. C(P) is reactivated by glutathionylation and subsequent reduction by glutaredoxin (Grx), or by thioredoxin (Trx). {ECO:0000250|UniProtKB:A9PCL4}. ARA:AT4G10740-MONOMER;,ARA:AT3G22421-MONOMER;,ARA:AT1G65990-MONOMER; 1.11.1.15 50611,49415,50008,47632,47478,50354,48278,48525,47129,45200,62654,34385,25391,37575,27074,37948,22110 F-box/kelch-repeat protein At4g33290,Putative F-box protein At4g10740,Putative F-box protein At3g22421,Putative F-box protein At3g22940,Putative F-box protein At5g41510,F-box protein At2g38590,F-box/kelch-repeat protein At1g48625,Putative F-box/kelch-repeat protein At3g22870,Putative F-box protein At5g41500,F-box protein At5g41490,Peroxiredoxin-2A (EC 1.11.1.15) (Peroxiredoxin IIA) (Thioredoxin peroxidase 2A),F-box associated ubiquitination effector family protein (F-box family protein-related) (T6K12.13 protein),F-box associated ubiquitination effector family protein (F-box family protein-like protein),F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2119181;,locus:2132721;,locus:2084553;,locus:2160442;,locus:2064148;,locus:2084548;,locus:2170393;,locus:2177926;,locus:2009734;,locus:2103000;,locus:2090245;,locus:2095208;,locus:504955734;,locus:504955670; AT4G33290,AT4G10740,AT3G22421,AT3G22940,AT5G41510,AT2G38590,AT1G48625,AT3G22870,AT5G41500,AT5G41490,AT1G65990,AT3G04250,AT3G25090,AT3G23680,AT3G23685,AT3G03405 F-box associated NA NA NA NA NA NA NA ENOG411EDWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EDWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDWI Q9FZJ3 FBK16_ARATH Putative F-box/kelch-repeat protein At1g27420 38942 Putative F-box/kelch-repeat protein At1g27420 locus:2015979; AT1G27420 Kelch repeat-containing F-box NA NA NA NA NA NA NA ENOG411EDWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase family M23 NA NA NA NA NA NA NA ENOG411EDWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Os04g0409200 protein (Fragment) A0A0P0W9U3 A0A0P0W9U3_ORYSJ Os04g0409200 OSNPB_040409200 ENOG411EDWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of chromosome condensation (RCC1) repeat NA NA NA NA NA NA NA ENOG411EDWZ F24B9.17 Q9LQP9 Q9LQP9_ARATH Exocyst subunit exo70 family protein H6 (F24B9.17 protein) R-ATH-5620916; 68402 Exocyst subunit exo70 family protein H6 (F24B9.17 protein) exocyst [GO:0000145]; pollen tube [GO:0090406]; exocytosis [GO:0006887] locus:504956262; AT1G07725 exocyst subunit EXO70 family protein H6 NA NA NA NA NA NA NA ENOG411EDWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EDWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase Zinc finger CCCH domain-containing protein 4 (OsC3H4) (EC 3.6.4.-),Os01g0256800 protein (Fragment) Q1EHT7,A0A0P0V0I7 C3H4_ORYSJ,A0A0P0V0I7_ORYSJ Os01g0256800 LOC_Os01g15300 P0711E10.43,Os01g0256800 OSNPB_010256800 ENOG411EDWQ HFR1 Q9FE22,A0A1P8AWQ4 HFR1_ARATH,A0A1P8AWQ4_ARATH Transcription factor HFR1 (Basic helix-loop-helix protein 26) (AtbHLH26) (bHLH 26) (Protein LONG HYPOCOTYL IN FAR-RED 1) (Protein REDUCED PHYTOCHROME SIGNALING) (Reduced sensitivity to far-red light) (Transcription factor EN 68) (bHLH transcription factor bHLH026),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein DISRUPTION PHENOTYPE: Partially blind to far-red (FR). Impaired inhibition of hypocotyl elongation and cotyledons expansion under continuous FR light conditions. {ECO:0000269|PubMed:19482971}. Fluence response curves in both R and FR light confirmed that rsf1 seedlings responded normally to R light and are less sensitive to all the tested fluences of FR light. However unlike phyA null mutants (phyA-211) they clearly responded to increasing fluences of FR light.,Hypocotyl elongation is less inhibited than in wild-type plants in both FR and blue light. Hypocotyl length in rsf1 seedlings was intermediate between the wild type and a photoreceptor null mutant under both light conditions.,In short days (SD) flowering time is unaffected. rsf1 plants were indistinguishable from wild type both in LD and SD using two criteria to measure flowering time (days until flowering and leaf number at flowering).,rsf1 mutants accumulated slightly but significantly lower levels of anthocyanins than the wild type. Long hypocotyl under far-red light-P. Quail-2000 FUNCTION: Atypical bHLH transcription factor that regulates photomorphogenesis through modulation of phytochrome (e.g. PHYA) and cryptochrome signalings (Ref.4, PubMed:11090209, PubMed:10995393, PubMed:19482971). Suppresses the transcriptional regulation activity of PIF4 by forming non-DNA-binding heterodimer. {ECO:0000269|PubMed:10995393, ECO:0000269|PubMed:11090209, ECO:0000269|PubMed:19482971, ECO:0000269|Ref.4}. 33615,32822 Transcription factor HFR1 (Basic helix-loop-helix protein 26) (AtbHLH26) (bHLH 26) (Protein LONG HYPOCOTYL IN FAR-RED 1) (Protein REDUCED PHYTOCHROME SIGNALING) (Reduced sensitivity to far-red light) (Transcription factor EN 68) (bHLH transcription factor bHLH026),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription cofactor activity [GO:0003712]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; blue light signaling pathway [GO:0009785]; red, far-red light phototransduction [GO:0009585]; response to far red light [GO:0010218]; response to light intensity [GO:0009642]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2204898; AT1G02340 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EDWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDWU CIPK1,CIPK17 Q8RWC9,Q94C40,A0A1P8AMC0 CIPK1_ARATH,CIPKH_ARATH,A0A1P8AMC0_ARATH CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.11.1) (SNF1-related kinase 3.16) (SOS2-like protein kinase PKS13),CBL-interacting serine/threonine-protein kinase 17 (EC 2.7.11.1) (SNF1-related kinase 3.21) (SOS2-like protein kinase PKS20),Non-specific serine/threonine protein kinase (EC 2.7.11.1) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner. {ECO:0000269|PubMed:22253446}.,FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 49933,48663,39052 CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.11.1) (SNF1-related kinase 3.16) (SOS2-like protein kinase PKS13),CBL-interacting serine/threonine-protein kinase 17 (EC 2.7.11.1) (SNF1-related kinase 3.21) (SOS2-like protein kinase PKS20),Non-specific serine/threonine protein kinase (EC 2.7.11.1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10590166}. locus:2090537;,locus:2007685; AT3G17510,AT1G48260 NAF domain NA NA NA NA NA NA NA ENOG411EBX1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBXT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphorylated CTD interacting factor 1 WW domain NA NA NA NA NA NA NA ENOG411EBXR RP2 Q9MAC9 PDRP2_ARATH Pyruvate, phosphate dikinase regulatory protein 2 (EC 2.7.11.32) (EC 2.7.4.27) (Pyruvate, Pi dikinase regulatory protein 2) (AtRP2) (PPDK RP2) (PPDK regulatory protein 2) FUNCTION: Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation. Has a much lower phosphotransferase activity than PDRP1 (PubMed:21883547). Can use ADP as a high specificity substrate and GDP as a lower affinity substrate, but has no activity with UDP (PubMed:21414960). {ECO:0000269|PubMed:17996018, ECO:0000269|PubMed:21414960, ECO:0000269|PubMed:21883547}. MISCELLANEOUS: Was thought to be devoided of phosphorylase activity (PubMed:17996018), but possess a much slower rate of phosphotransferase than PDRP1. {ECO:0000269|PubMed:21883547}. 2.7.11.32; 2.7.11.32; 2.7.4.27 41386 Pyruvate, phosphate dikinase regulatory protein 2 (EC 2.7.11.32) (EC 2.7.4.27) (Pyruvate, Pi dikinase regulatory protein 2) (AtRP2) (PPDK RP2) (PPDK regulatory protein 2) chloroplast [GO:0009507]; cytosol [GO:0005829]; ATP binding [GO:0005524]; phosphotransferase activity, phosphate group as acceptor [GO:0016776]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in pollen and seeds. {ECO:0000269|PubMed:17996018}. locus:2102077; AT3G01200 PPDK regulatory protein 2 NA NA NA NA NA NA NA ENOG411EDY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0232050 protein (Fragment) A0A0N7KEZ4 A0A0N7KEZ4_ORYSJ Os02g0232050 OSNPB_020232050 ENOG411EDY0 MUK11.5 F4JXP4 F4JXP4_ARATH Ankyrin-repeat containing protein 69484 Ankyrin-repeat containing protein integral component of membrane [GO:0016021] locus:2175448; AT5G04730 Inherit from KOG: Ankyrin Repeat NA NA NA NA NA NA NA ENOG411EDY3 RLK5 P47735 RLK5_ARATH Receptor-like protein kinase 5 (EC 2.7.10.1) (EC 2.7.11.1) (Protein HAESA) DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with HSL2. Hae and hsl2 double mutants have a strong abscission defect. {ECO:0000269|PubMed:18660431, ECO:0000269|PubMed:18809915}. same as smb-3 single mutant,Deficient in floral organ abscission. Petals sepals and filaments are retained indefinitely. FUNCTION: Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family. {ECO:0000269|PubMed:10640280, ECO:0000269|PubMed:18660431, ECO:0000269|PubMed:18809915}. MISCELLANEOUS: The name HAESA derives from a Latin word meaning 'to adhere to'. 2.7.10.2; 2.7.10.1; 2.7.11.1 109096 Receptor-like protein kinase 5 (EC 2.7.10.1) (EC 2.7.11.1) (Protein HAESA) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; floral organ abscission [GO:0010227]; lateral root morphogenesis [GO:0010102]; pectin catabolic process [GO:0045490]; protein autophosphorylation [GO:0046777]; regulation of gene expression [GO:0010468] TISSUE SPECIFICITY: Expressed in roots and rosettes. Expressed at the base of petioles and pedicels, and in the abscission zones of the floral organs. {ECO:0000269|PubMed:10640280}. locus:2005540; AT4G28490 STYKc NA NA NA NA NA NA NA ENOG411EDYB MEB2 F4KFS7 MEB2_ARATH Membrane protein of ER body 2 DISRUPTION PHENOTYPE: No visible phenotype and no effect on pathogen sensitivity. {ECO:0000269|PubMed:23166355}. FUNCTION: May sequester excess cytosolic iron and manganese into endoplasmic reticulum to reduce metal ion toxicity. Not essential for the accumulation of ER body components, including PYK10. {ECO:0000269|PubMed:23166355}. 61046 Membrane protein of ER body 2 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; ER body [GO:0010168]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to iron ion [GO:0071281]; intracellular sequestering of iron ion [GO:0006880] locus:2169804; AT5G24290 VIT family NA NA NA NA NA NA NA ENOG411EDYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411EDYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EDYS CDKD-2 Q9C9M7 CDKD2_ARATH Cyclin-dependent kinase D-2 (CDKD;2) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 4-At) (CAK4-At) FUNCTION: Forms a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II. {ECO:0000269|PubMed:15486101, ECO:0000269|PubMed:16856985}. R-ATH-113418;R-ATH-5696395;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-69202;R-ATH-69273;R-ATH-69656;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 2.7.11.22; 2.7.11.23 39201 Cyclin-dependent kinase D-2 (CDKD;2) (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase 4-At) (CAK4-At) cytoplasm [GO:0005737]; nucleus [GO:0005634]; TFIIK complex [GO:0070985]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; RNA polymerase II carboxy-terminal domain kinase activity [GO:0008353]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] TISSUE SPECIFICITY: Expressed in suspension cell culture, but not in plant organs. {ECO:0000269|PubMed:12527363}. locus:2033349; AT1G66750 Cyclin-dependent kinase NA NA NA NA NA NA NA ENOG411EDYX BHLH114 Q9M0X8,A0A1P8B5D4,A0A1P8B5F0,A0A1P8B5D9,A0A1P8B5F4 BH114_ARATH,A0A1P8B5D4_ARATH,A0A1P8B5F0_ARATH,A0A1P8B5D9_ARATH,A0A1P8B5F4_ARATH Transcription factor bHLH114 (Basic helix-loop-helix protein 114) (AtbHLH114) (bHLH 114) (Transcription factor EN 65) (bHLH transcription factor bHLH114),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 33345,25174,27005,30520,20129 Transcription factor bHLH114 (Basic helix-loop-helix protein 114) (AtbHLH114) (bHLH 114) (Transcription factor EN 65) (bHLH transcription factor bHLH114),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Differentiating root endodermis. {ECO:0000269|PubMed:16581911}. locus:2115683; AT4G05170 HLH NA NA NA NA NA NA NA ENOG411E5P8 SAUR71,SAUR72 Q9SGU2,Q9LTV3 SAU71_ARATH,SAU72_ARATH Auxin-responsive protein SAUR71 (Protein SMALL AUXIN UP RNA 71),Auxin-responsive protein SAUR72 (Protein SMALL AUXIN UP RNA 72) FUNCTION: Plays a role in the regulation of cell expansion, root meristem patterning and auxin transport. {ECO:0000250|UniProtKB:Q9SA49}. 12782,14967 Auxin-responsive protein SAUR71 (Protein SMALL AUXIN UP RNA 71),Auxin-responsive protein SAUR72 (Protein SMALL AUXIN UP RNA 72) cytoplasm [GO:0005737]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008] DEVELOPMENTAL STAGE: Extensively expressed in guard mother cells and young guard cells of cotyledons and leaves during stomatal formation. {ECO:0000269|PubMed:23759547}. TISSUE SPECIFICITY: Highly expressed in the steles of roots and hypocotyls. {ECO:0000269|PubMed:23759547}. locus:2011801;,locus:2087700; AT1G56150,AT3G12830 Auxin-responsive family NA NA NA NA NA NA NA ENOG411E5P9 Q9FJI2 Q9FJI2_ARATH Hydroxyacyl-thioester dehydratase type-like protein R-ATH-75105; 18576 Hydroxyacyl-thioester dehydratase type-like protein mitochondrion [GO:0005739]; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [GO:0019171]; fatty acid biosynthetic process [GO:0006633]; photorespiration [GO:0009853]; thylakoid membrane organization [GO:0010027] locus:6530298249; AT5G60335 MaoC like domain Os05g0185700 protein A0A0P0WIU6 A0A0P0WIU6_ORYSJ Os05g0185700 OSNPB_050185700 ENOG411E5P2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0123800 protein Q8LIS8 Q8LIS8_ORYSJ OJ1007_H09.101 P0474G09.101 Os07g0123800 OSJNBa0057M23.140 OSNPB_070123800 ENOG411E5P0 MJE7.14 Q9SHW4,Q8LEL0 Q9SHW4_ARATH,Q8LEL0_ARATH Transmembrane protein (Uncharacterized protein At2g10930),Pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein (Uncharacterized protein At5g48500) 17034,18974 Transmembrane protein (Uncharacterized protein At2g10930),Pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein (Uncharacterized protein At5g48500) integral component of membrane [GO:0016021],response to karrikin [GO:0080167] locus:2042731;,locus:2166050; AT2G10930,AT5G48500 NA NA NA NA NA NA NA NA ENOG411E5P1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0477100 protein A0A0P0WBG0 A0A0P0WBG0_ORYSJ Os04g0477100 OSNPB_040477100 ENOG411E5P6 TIFY10A,JAZ1 Q9LMA8,Q3ED96 TI10A_ARATH,Q3ED96_ARATH Protein TIFY 10A (Jasmonate ZIM domain-containing protein 1),Jasmonate-zim-domain protein 1 FUNCTION: Repressor of jasmonate responses. Jasmonoyl-isoleucine (JA-Ile) specifically promotes COI1-TIFY10A/JAZ1 interaction. Interacts with COI1 and inositol pentakisphosphate to form a high-affinity jasmonates coreceptor. {ECO:0000269|PubMed:17637675, ECO:0000269|PubMed:17637677, ECO:0000269|PubMed:19151223}. 27608,20494 Protein TIFY 10A (Jasmonate ZIM domain-containing protein 1),Jasmonate-zim-domain protein 1 nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response to bacterium [GO:0042742]; flower development [GO:0009908]; jasmonic acid mediated signaling pathway [GO:0009867]; negative regulation of nucleic acid-templated transcription [GO:1903507]; pollen development [GO:0009555]; regulation of cellular response to alkaline pH [GO:1900067]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Srtongly expressed in root tips. {ECO:0000269|PubMed:17499004, ECO:0000269|PubMed:17637677}. locus:2202180; AT1G19180 jasmonate-zim-domain protein 1 NA NA NA NA NA NA NA ENOG411E5P7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os05g0478400 protein A0A0P0WNK5 A0A0P0WNK5_ORYSJ Os05g0478400 OSNPB_050478400 ENOG411E5P4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SEL1 NA NA NA NA NA NA NA ENOG411E5P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine proteinase inhibitor A0A0P0XTV7 A0A0P0XTV7_ORYSJ Os10g0400400 OSNPB_100400400 ENOG411E5PZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0100600 protein (cDNA clone:001-103-G07, full insert sequence) Q6YU99 Q6YU99_ORYSJ Os02g0100600 B1370C05.7 OsJ_04981 OSJNOa183H18.9 OSNPB_020100600 ENOG411E5PX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Os01g0243700 protein (Putative beta-1,3-glucanase) (cDNA clone:001-031-H08, full insert sequence) (cDNA clone:J033095M12, full insert sequence) Q5NA70 Q5NA70_ORYSJ Os01g0243700 Os01g0243700 B1008C01.9 B1066G12.32 OsJ_01077 OSNPB_010243700 ENOG411E5PY Q9STH7 Q9STH7_ARATH AT4g12340/T4C9_180 (Copper ion binding protein) (Uncharacterized protein AT4g12340) (Uncharacterized protein T4C9.180) 19438 AT4g12340/T4C9_180 (Copper ion binding protein) (Uncharacterized protein AT4g12340) (Uncharacterized protein T4C9.180) copper ion binding [GO:0005507] locus:2139139; AT4G12340 NA Os05g0103500 protein (cDNA clone:001-007-A10, full insert sequence) (cDNA clone:J033109D16, full insert sequence) Q0DLG4 Q0DLG4_ORYSJ Os05g0103500 Os05g0103500 OSNPB_050103500 ENOG411E5PR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0222500 protein,Os03g0262801 protein,Os03g0222300 protein Q0DTV6,A0A0P0VVX6,A0A0N7KGU9 Q0DTV6_ORYSJ,A0A0P0VVX6_ORYSJ,A0A0N7KGU9_ORYSJ Os03g0222500 Os03g0222500 OsJ_09965 OSNPB_030222500,Os03g0262801 OSNPB_030262801,Os03g0222300 OSNPB_030222300 ENOG411E5PS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os03g0698300 protein Q851S0 Q851S0_ORYSJ Os03g0698300 LOC_Os03g49132 OSJNBb0017F17.23 OSNPB_030698300 ENOG411E5PP BHLH126 Q9STJ6 BH126_ARATH Transcription factor bHLH126 (Basic helix-loop-helix protein 126) (AtbHLH126) (bHLH 126) (Transcription factor EN 3) (bHLH transcription factor bHLH126) 24465 Transcription factor bHLH126 (Basic helix-loop-helix protein 126) (AtbHLH126) (bHLH 126) (Transcription factor EN 3) (bHLH transcription factor bHLH126) RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] AT4G25410 Transcription factor NA NA NA NA NA NA NA ENOG411E5PQ EFL4 Q570U6 EF4L4_ARATH Protein ELF4-LIKE 4 FUNCTION: Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. {ECO:0000250}. 12663 Protein ELF4-LIKE 4 nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; photoperiodism [GO:0009648]; positive regulation of circadian rhythm [GO:0042753]; rhythmic process [GO:0048511] locus:505006126; AT1G17455 ELF4-Like NA NA NA NA NA NA NA ENOG411E5PV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0380200 protein Q8LIU7 Q8LIU7_ORYSJ Os01g0380200 B1096D03.12 B1150E06.35 OsJ_01856 OSNPB_010380200 ENOG411E5PW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5PT HEC1 Q9FHA7,A0A1P8BGW7 HEC1_ARATH,A0A1P8BGW7_ARATH Transcription factor HEC1 (Basic helix-loop-helix protein 88) (AtbHLH88) (bHLH 88) (Protein HECATE 1) (Transcription factor EN 118) (bHLH transcription factor bHLH088),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein DISRUPTION PHENOTYPE: Impaired pollen tube growth. {ECO:0000269|PubMed:17855426}. Shows no alteration in fruit phenotype.,The transmitting tract of hec1 was indistinguishable from that of wild type in size staining intensity (Alcian Blue) and cytology.,Compared with wild type stigmas were smaller and more variable in size in hec1 hec3 mutants. There was also a slight tendency for the style to be somewhat longer in the double mutant.,Double mutant had a sizable reduction in overall fertility (17% wild-type seed set) along with significant variations in individual fruit size and seed yield. Seed distribution was biased toward the apical half of the carpel but substantial fertilization also occurred in the basal half.,Mutant carpels showed significantly fewer pollen tubes and pollination events particularly in the basal half of the gynoecium.,The double mutant however had dramatically reduced Alcian Blue staining in both the style and the septum compared with wild type. In analyzing pre-fertilization stages of development the transmitting tract of the hec1 hec3 double mutant had no delay in onset of ECM production but produced less ECM than wild type. FUNCTION: Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. 26230,24764 Transcription factor HEC1 (Basic helix-loop-helix protein 88) (AtbHLH88) (bHLH 88) (Protein HECATE 1) (Transcription factor EN 118) (bHLH transcription factor bHLH088),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel formation [GO:0048462]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of gene expression [GO:0010468]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; transmitting tissue development [GO:0010500],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. TISSUE SPECIFICITY: Flowers, especially in gynoecium. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17855426}. locus:2155543; AT5G67060 Transcription factor NA NA NA NA NA NA NA ENOG411E5PU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: phosphotransferase 1 Os06g0347000 protein,Os03g0702600 protein Q5Z5M8,Q75I87 Q5Z5M8_ORYSJ,Q75I87_ORYSJ Os06g0347000 B1077E08.6 OsJ_21261 OSNPB_060347000,OSJNBa0004L11.20 Os03g0702600 LOC_Os03g49560 OsJ_12258 OSNPB_030702600 ENOG411E5PJ F26K24.7 Q9SF20,Q9FG22,F4J7G5 Q9SF20_ARATH,Q9FG22_ARATH,F4J7G5_ARATH F26K24.7 protein (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein) (Uncharacterized protein At3g11780),At5g06480 (Immunoglobulin E-set superfamily protein) (Similarity to unknown protein),MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 16805,16829,19033 F26K24.7 protein (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein) (Uncharacterized protein At3g11780),At5g06480 (Immunoglobulin E-set superfamily protein) (Similarity to unknown protein),MD-2-related lipid recognition domain-containing protein / ML domain-containing protein intracellular [GO:0005622]; intracellular sterol transport [GO:0032366],vacuole [GO:0005773]; intracellular sterol transport [GO:0032366] locus:2144078;,locus:2081541; AT3G11780,AT5G06480 MD-2-related lipid recognition domain-containing protein ML domain-containing protein ML domain protein, putative, expressed (Os03g0788200 protein) (Putative ML domain protein),Os07g0159800 protein (cDNA clone:001-012-F03, full insert sequence),Os07g0159800 protein (Fragment) Q6F3C5,Q8H559,A0A0P0X2G2 Q6F3C5_ORYSJ,Q8H559_ORYSJ,A0A0P0X2G2_ORYSJ Os03g0788200 LOC_Os03g57420 Os03g0788200 OSJNBb0024J04.17 OSNPB_030788200,OJ1714_H10.115 Os07g0159800 OsJ_23158 OSNPB_070159800 P0455F03.46,Os07g0159800 OSNPB_070159800 ENOG411E5PK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0824600 protein A0A0P0VRG9 A0A0P0VRG9_ORYSJ Os02g0824600 OSNPB_020824600 ENOG411E5PH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA linker histone H1 and H5 family NA NA NA NA NA NA NA ENOG411E5PI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411E5PN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Low-CO2 inducible protein NA NA NA NA NA NA NA ENOG411E5PM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity) NA NA NA NA NA NA NA ENOG411E5PB SRP14 O04421,F4IS20 SRP14_ARATH,F4IS20_ARATH Signal recognition particle 14 kDa protein (SRP14),Signal recognition particle, SRP9/SRP14 subunit FUNCTION: Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (By similarity). {ECO:0000250}. R-ATH-1799339;R-ATH-6798695; 13781,12738 Signal recognition particle 14 kDa protein (SRP14),Signal recognition particle, SRP9/SRP14 subunit signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; endoplasmic reticulum signal peptide binding [GO:0030942]; protein targeting to ER [GO:0045047]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614],signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; endoplasmic reticulum signal peptide binding [GO:0030942]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614] locus:2044029; AT2G43640 Signal recognition particle 14 kDa Signal recognition particle 14 kDa protein (SRP14) O04433 SRP14_ORYSJ SRP14 Os04g0623700 LOC_Os04g53220 OsJ_16219 OSJNBa0053K19.10 FUNCTION: Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (By similarity). {ECO:0000250}. ENOG411E5PC SPEAR3,SPEAR1,TIE2,TIE1 Q6IDB0,Q84X40,A0A1P8AX28,A0A1P8B804,A0A1P8B803 SPER3_ARATH,SPER1_ARATH,A0A1P8AX28_ARATH,A0A1P8B804_ARATH,A0A1P8B803_ARATH Protein SPEAR3 (SPL-like, EAR-containing protein 3) (TCP interactor containing EAR motif protein 1),Protein SPEAR1 (SPL-like, EAR-containing protein 1) (TCP interactor containing EAR motif protein 2),Uncharacterized protein,Mediator of RNA polymerase II transcription subunit DISRUPTION PHENOTYPE: No visible phenotype, due to the redundancy with SPEAR2/TIE4 and SPEAR4/TIE3. {ECO:0000269|PubMed:23444332}. FUNCTION: Transcriptional regulator of leaf development. Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit the CIN-like TCP transcription factors (PubMed:23444332). {ECO:0000269|PubMed:23444332}.,FUNCTION: Adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors. {ECO:0000250|UniProtKB:Q6IDB0}. MISCELLANEOUS: Knock down expression of SPEAR2/TIE4 and SPEAR4/TIE3 by RNAi in a SPEAR3/TIE1 null mutant produces lines displaying epinastic leaves. {ECO:0000269|PubMed:23444332}. 21409,19563,18624,20063,16263 Protein SPEAR3 (SPL-like, EAR-containing protein 3) (TCP interactor containing EAR motif protein 1),Protein SPEAR1 (SPL-like, EAR-containing protein 1) (TCP interactor containing EAR motif protein 2),Uncharacterized protein,Mediator of RNA polymerase II transcription subunit nucleus [GO:0005634]; leaf development [GO:0048366]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351],regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in shoot apical meristem, cotyledons and leaves. Detected at the leaf margins and in the vascular bundles at the base of the leaves. {ECO:0000269|PubMed:23444332}.,TISSUE SPECIFICITY: Not detected in leaves. {ECO:0000269|PubMed:23444332}. locus:2117828;,locus:2061629; AT4G28840,AT2G20080 NA NA NA NA NA NA NA NA ENOG411E5PA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein S21 NA NA NA NA NA NA NA ENOG411E5PF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor AP2 domain containing protein, expressed (Os03g0860100 protein) (cDNA clone:006-211-G07, full insert sequence) Q10A97 Q10A97_ORYSJ Os03g0860100 LOC_Os03g64260 Os03g0860100 OSNPB_030860100 ENOG411E5PG DREB1F Q9LN86 DRE1F_ARATH Dehydration-responsive element-binding protein 1F (Protein DREB1F) Longer roots when plants are grown under salt stress (50-100 nM NaCl). FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. 23616 Dehydration-responsive element-binding protein 1F (Protein DREB1F) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell growth [GO:0016049]; glucosinolate metabolic process [GO:0019760]; regulation of gibberellin biosynthetic process [GO:0010371]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; response to freezing [GO:0050826]; response to heat [GO:0009408]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] locus:2195052; AT1G12610 dwarf and delayed flowering 1 NA NA NA NA NA NA NA ENOG411E5PD A6QR87 A6QR87_ARATH At5g20670 (DUF1677 family protein (DUF1677)) 16694 At5g20670 (DUF1677 family protein (DUF1677)) locus:2180499; AT5G20670 Protein of unknown function (DUF1677) NA NA NA NA NA NA NA ENOG411E5PE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E1IU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pentatricopeptide Os11g0483950 protein (Pentatricopeptide repeat-containing protein, putative),Os02g0581900 protein Q2R484,A0A0N7KFK0 Q2R484_ORYSJ,A0A0N7KFK0_ORYSJ Os11g0483950 LOC_Os11g29360 Os11g0483950 OsJ_33904 OSNPB_110483950,Os02g0581900 OSNPB_020581900 ENOG411E1IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Indole-3-glycerol phosphate synthase Os08g0320400 protein A0A0P0XEA1 A0A0P0XEA1_ORYSJ Os08g0320400 OSNPB_080320400 ENOG411E1IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain Putative GDP-L-fucose synthase 2 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 2),Os02g0651400 protein Q67WR5,A0A0P0VMS1 FCL2_ORYSJ,A0A0P0VMS1_ORYSJ Os06g0652300 LOC_Os06g44260 OsJ_22190 OSJNBa0085J13.4,Os02g0651400 OSNPB_020651400 FUNCTION: Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. {ECO:0000250|UniProtKB:Q9LMU0}. ENOG411E1IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Transcription factor TGAL8 (bZIP transcription factor 49) (OsbZIP49) Q69T21 TGAL8_ORYSJ TGAL8 Os06g0614100 LOC_Os06g41100 OsJ_21969 P0417G12.29 P0691E09.5 FUNCTION: Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. ENOG411E1IA GATA25,ZIM Q9LRH6,F4JQX4 GAT25_ARATH,F4JQX4_ARATH GATA transcription factor 25 (Protein TIFY 1) (Protein ZIM),GATA-type zinc finger protein with TIFY domain-containing protein FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. 33261,34223 GATA transcription factor 25 (Protein TIFY 1) (Protein ZIM),GATA-type zinc finger protein with TIFY domain-containing protein nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; zinc ion binding [GO:0008270]; circadian rhythm [GO:0007623]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. locus:2135937; AT4G24470 gata transcription factor NA NA NA NA NA NA NA ENOG411E1IB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E1IH CHX25,CHX24 Q9FGH6,Q1HDT2 CHX25_ARATH,CHX24_ARATH Cation/H(+) antiporter 25 (Protein CATION/H+ EXCHANGER 25) (AtCHX25),Cation/H(+) antiporter 24 (Protein CATION/H+ EXCHANGER 24) (AtCHX24) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 95833,96681 Cation/H(+) antiporter 25 (Protein CATION/H+ EXCHANGER 25) (AtCHX25),Cation/H(+) antiporter 24 (Protein CATION/H+ EXCHANGER 24) (AtCHX24) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:2171238;,locus:2166168; AT5G58460,AT5G37060 Cation H( ) antiporter NA NA NA NA NA NA NA ENOG411E1IK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os03g0197200 protein (Fragment),Mannitol transporter, putative, expressed (Os03g0197100 protein) (cDNA clone:J023048F11, full insert sequence) Q0DUA4,Q10QG5 Q0DUA4_ORYSJ,Q10QG5_ORYSJ Os03g0197200 Os03g0197200 OSNPB_030197200,Os03g0197100 LOC_Os03g10090 Os03g0197100 OsJ_09774 OSNPB_030197100 ENOG411E1IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0108100 protein (Protein kinase domain containing protein, expressed),Os11g0108800 protein (Protein kinase domain containing protein, expressed),Os12g0109850 protein Q2QYS2,Q2RBK1,A0A0P0Y627 Q2QYS2_ORYSJ,Q2RBK1_ORYSJ,A0A0P0Y627_ORYSJ LOC_Os12g01740 Os12g0108100 OSNPB_120108100,Os11g0108800 LOC_Os11g01740 OSNPB_110108800,Os12g0109850 OSNPB_120109850 ENOG411E1I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Protein PHLOEM protein 2-LIKE Os10g0102400 protein (Fragment) Q0IZD2 Q0IZD2_ORYSJ Os10g0102400 OSNPB_100102400 ENOG411E1I1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 99A2 (EC 1.14.-.-),9-beta-pimara-7,15-diene oxidase (EC 1.14.13.144) (Cytochrome P450 99A3),Os04g0180400 protein (Fragment) Q7X7X4,Q0JF01,A0A0P0W708 C99A2_ORYSJ,C99A3_ORYSJ,A0A0P0W708_ORYSJ CYP99A2 Os04g0180400 LOC_Os04g10160 OSJNBa0027O01.2 OSJNBa0052P16.24,CYP99A3 Os04g0178400 LOC_Os04g09920 OsJ_013415 OSJNBa0096F01.14,Os04g0180400 OSNPB_040180400 FUNCTION: Involved in momilactone phytoalexins biosynthesis. Participates in the biosynthetic steps between 9-beta-pimara-7,15-diene and 3-beta-hydroxy-9-beta-pimara-7,15-dien-19,6-beta-olide. {ECO:0000269|PubMed:17872948}.,FUNCTION: Involved in momilactone phytoalexins biosynthesis; acts as a multifunctional diterpene oxidase. Participates in the biosynthetic steps between 9-beta-pimara-7,15-diene and 3-beta-hydroxy-9-beta-pimara-7,15-dien-19,6-beta-olide. Catalyzes also consecutive oxidations at C19 of syn-stemod-13(17)-ene. {ECO:0000269|PubMed:17872948, ECO:0000269|PubMed:21175892}. MISCELLANEOUS: 3-beta-hydroxy-9-beta-pimara-7,15-dien-19,6-beta-olide is a precursor of the phytoalexins momilactones A and B. Phytoalexins are diterpenoid secondary metabolites involved in the defense mechanism of the plant and produced in response to attack (by a pathogen, elicitor or UV irradiation). Momilactone B can also act as an allochemical (an antimicrobial and allelopathic agent), being constitutively produced in the root of the plant and secreted to the rhizosphere where it suppresses the growth of neighboring plants and soil microorganisms. ENOG411E1I8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DSJX CAPH Q564K3 CND2_ARATH Condensin complex subunit 2 (Chromosome-associated protein H) (AtCAP-H) (Non-SMC condensin I complex subunit H) (Protein EMBRYO DEFECTIVE 2795) DISRUPTION PHENOTYPE: Embryo development arrested at the preglobular stage. {ECO:0000269|PubMed:18926486}. Embryo defective; Preglobular-D. Meinke-2008 FUNCTION: Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (By similarity). Essential protein. {ECO:0000250}. R-ATH-2514853; 75365 Condensin complex subunit 2 (Chromosome-associated protein H) (AtCAP-H) (Non-SMC condensin I complex subunit H) (Protein EMBRYO DEFECTIVE 2795) condensed chromosome [GO:0000793]; cytoplasm [GO:0005737]; nuclear condensin complex [GO:0000799]; chromatin binding [GO:0003682]; DNA topoisomerase (ATP-hydrolyzing) activator activity [GO:0072587]; DNA topoisomerase binding [GO:0044547]; cell division [GO:0051301]; mitotic chromosome condensation [GO:0007076] TISSUE SPECIFICITY: Mostly expressed in flower buds and flowers, and, to a lower extent, in roots, stems, leaves and seedlings. {ECO:0000269|PubMed:15883832}. locus:2060273; AT2G32590 Regulatory subunit of the condensin complex a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (By similarity) Os01g0532800 protein (Fragment) A0A0P0V3K8 A0A0P0V3K8_ORYSJ Os01g0532800 OSNPB_010532800 ENOG411DSJW Q9S7R7 Y3903_ARATH BTB/POZ domain-containing protein At3g09030 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 49278 BTB/POZ domain-containing protein At3g09030 protein homooligomerization [GO:0051260]; protein ubiquitination [GO:0016567] locus:2095279; AT3G09030 domain-containing protein Os03g0264700 protein (Potassium channel tetramerisation domain-containing protein, putative, expressed) Q84QB5 Q84QB5_ORYSJ OJ1012B02.6 LOC_Os03g15800 Os03g0264700 OSNPB_030264700 ENOG411DSJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucuronate 4-epimerase Os08g0526100 protein (UDP-glucuronic acid 4-epimerase isoform 3),Os09g0504000 protein Q2MJA8,Q0J0N3 Q2MJA8_ORYSJ,Q0J0N3_ORYSJ Os08g0526100 Os08g0526100 OSNPB_080526100,Os09g0504000 Os09g0504000 OsJ_29922 OSNPB_090504000 ENOG411DSJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cis-zeatin O-glucosyltransferase Glycosyltransferase (EC 2.4.1.-),OSJNBb0012E24.10 protein (Os04g0556400 protein) Q7XQJ5,Q7XSN7,Q7XQJ9,Q7XU03,Q7XU02 Q7XQJ5_ORYSJ,Q7XSN7_ORYSJ,Q7XQJ9_ORYSJ,Q7XU03_ORYSJ,Q7XU02_ORYSJ Os04g0565400 OsJ_15801 OSJNBa0017B10.13 OSNPB_040565400,Os04g0556400 OsJ_15736 OSJNBb0012E24.10 OSNPB_040556400,Os04g0565200 Os04g0565200 OsJ_15800 OSJNBa0017B10.9 OSNPB_040565200,Os04g0556500 OSJNBb0012E24.11 OSNPB_040556500,Os04g0556600 OsJ_15739 OSJNBb0012E24.12 OSNPB_040556600 ENOG411DSJH MQJ2.13 Q8RWW8,A0A1P8BG94 Q8RWW8_ARATH,A0A1P8BG94_ARATH Rab3 GTPase-activating protein catalytic protein (Uncharacterized protein At5g58510),Rab3 GTPase-activating protein catalytic protein 108904,97839 Rab3 GTPase-activating protein catalytic protein (Uncharacterized protein At5g58510),Rab3 GTPase-activating protein catalytic protein chloroplast [GO:0009507]; cytoplasm [GO:0005737]; GTPase activator activity [GO:0005096]; positive regulation of GTPase activity [GO:0043547],GTPase activator activity [GO:0005096] locus:2171203; AT5G58510 rab3 GTPase-activating protein catalytic subunit-like Expressed protein (Os03g0295700 protein) (cDNA clone:J013121D21, full insert sequence) Q10MT9 Q10MT9_ORYSJ Os03g0295700 LOC_Os03g18440 Os03g0295700 OSNPB_030295700 ENOG411DSJ3 CYT1 Q9M2S0,O22287 GMPP2_ARATH,GMPP1_ARATH Probable mannose-1-phosphate guanylyltransferase 2 (EC 2.7.7.13),Mannose-1-phosphate guanylyltransferase 1 (EC 2.7.7.13) (GDP-mannose pyrophosphorylase 1) (Protein CYTOKINESIS DEFECTIVE 1) (Protein EMBRYO DEFECTIVE 101) (Protein HYPERSENSITIVE TO AMMONIUM ION 1) (Protein SENSITIVE TO OZONE 1) (Protein VITAMIN C DEFECTIVE 1) DISRUPTION PHENOTYPE: Embryonic lethal. Deficient in N-glycosylation, altered in cytokinesis and cell wall architecture during embryogenesis. Mutants vtc1 and hsn1 with reduced enzyme activity show reduced root length and leaf cell size, reduced accumulation of ascorbate, increased sensitivity to ozone, UV-B and oxidative stresses, increased levels of abscisic acid (ABA), salicylic acid (SA) and resistance to virulent pathogens and root growth inhibition in the presence of NH(4)(+). {ECO:0000269|PubMed:10097187, ECO:0000269|PubMed:10655235, ECO:0000269|PubMed:12671089, ECO:0000269|PubMed:15064386, ECO:0000269|PubMed:16244149, ECO:0000269|PubMed:16720601, ECO:0000269|PubMed:19011088, ECO:0000269|PubMed:20007685, ECO:0000269|PubMed:8790441, ECO:0000269|PubMed:9390448, ECO:0000269|PubMed:9750345}. hypersensitive to NH4+,Increased sensitivity to salt stress.,have 10-25% of wild type ascorbic acid exhibit microlesions express pathogenesis-related (PR) proteins and have enhanced basal resistance against infections caused by Pseudomonas syringae. The mutants have a delayed senescence phenotype with smaller leaf cells than the wild type at leaf maturity. The vtc leaves have more glutathione than the wild type with higher ratios of reduced glutathione to glutathione disulfide.,mutation causes sensitivity to ozone and other abiotic stresses,mutation enhances pathogen resistance Null: Embryo defective; Cotyledon; Knockdown: Low vitamin C levels; Sensitive to ozone and UV light-D. Meinke; W. Lukowitz-2001 FUNCTION: Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. {ECO:0000250}.,FUNCTION: Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate. {ECO:0000269|PubMed:10097187, ECO:0000269|PubMed:10655235, ECO:0000269|PubMed:11226227, ECO:0000269|PubMed:12671089, ECO:0000269|PubMed:15064386, ECO:0000269|PubMed:16244149, ECO:0000269|PubMed:16720601, ECO:0000269|PubMed:18849295, ECO:0000269|PubMed:19011088, ECO:0000269|PubMed:8790441, ECO:0000269|PubMed:9390448}. PATHWAY: Nucleotide-sugar biosynthesis; GDP-alpha-D-mannose biosynthesis; GDP-alpha-D-mannose from alpha-D-mannose 1-phosphate (GTP route): step 1/1. ARA:AT3G55590-MONOMER;,MetaCyc:AT2G39770-MONOMER; 2.7.7.13; Biosynthesis of secondary metabolites (01110),Amino sugar and nucleotide sugar metabolism (00520),Fructose and mannose metabolism (00051),Metabolic pathways (01100) 2.7.7.13 39808,39577 Probable mannose-1-phosphate guanylyltransferase 2 (EC 2.7.7.13),Mannose-1-phosphate guanylyltransferase 1 (EC 2.7.7.13) (GDP-mannose pyrophosphorylase 1) (Protein CYTOKINESIS DEFECTIVE 1) (Protein EMBRYO DEFECTIVE 101) (Protein HYPERSENSITIVE TO AMMONIUM ION 1) (Protein SENSITIVE TO OZONE 1) (Protein VITAMIN C DEFECTIVE 1) GTP binding [GO:0005525]; mannose-1-phosphate guanylyltransferase activity [GO:0004475]; GDP-mannose biosynthetic process [GO:0009298],cytosol [GO:0005829]; nucleus [GO:0005634]; GTP binding [GO:0005525]; mannose-1-phosphate guanylyltransferase activity [GO:0004475]; cellulose biosynthetic process [GO:0030244]; defense response to bacterium [GO:0042742]; GDP-mannose biosynthetic process [GO:0009298]; L-ascorbic acid biosynthetic process [GO:0019853]; response to ammonium ion [GO:0060359]; response to heat [GO:0009408]; response to jasmonic acid [GO:0009753]; response to ozone [GO:0010193]; response to salt stress [GO:0009651] locus:2100001;,locus:2005504; AT3G55590,AT2G39770 mannose-1-phosphate guanylyltransferase Probable mannose-1-phosphate guanylyltransferase 2 (EC 2.7.7.13),Probable mannose-1-phosphate guanylyltransferase 1 (EC 2.7.7.13),Probable mannose-1-phosphate guanylyltransferase 3 (EC 2.7.7.13),Os03g0268400 protein Q941T9,Q84JH5,Q6Z9A3,A0A0P0VVW8 GMPP2_ORYSJ,GMPP1_ORYSJ,GMPP3_ORYSJ,A0A0P0VVW8_ORYSJ Os01g0847200 OsJ_26535 P0005H10.12 P0446B05.40,Os03g0268400 LOC_Os03g16150 OJA1364E02.11 OsJ_10274 OSJNBa0071M09.2,Os08g0237200 LOC_Os08g13930 OsJ_04069 P0682A06.20,Os03g0268400 OSNPB_030268400 FUNCTION: Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. {ECO:0000250}. ENOG411EBYM ROPGEF4 Q0WNP7 ROGF4_ARATH Rop guanine nucleotide exchange factor 4 (AtRopGEF4) (Rho of plants guanine nucleotide exchange factor 4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plant roots have reduced density of secondary wall pits in metaxylem vessels. {ECO:0000269|PubMed:22500990, ECO:0000269|PubMed:22984069}. Short root hairs-H. Cho-2009 FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. In association with ROPGEF1, acts as specific regulator of ARAC10/ROP11 function in ABA-mediated stomatal closure. {ECO:0000269|PubMed:22500990, ECO:0000269|PubMed:22984069}. MISCELLANEOUS: Plants overexpressing ROPGEF1 or ROPGEF4 are relatively insensitive to ABA-induced stomatal closure and become severely wilted during drought stress. A similar phenotype is observed in plants expressing a constitutively active ARAC10/ROP11 (PubMed:22500990). {ECO:0000305|PubMed:22500990}. 52035 Rop guanine nucleotide exchange factor 4 (AtRopGEF4) (Rho of plants guanine nucleotide exchange factor 4) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; secondary cell wall [GO:0009531]; Rho guanyl-nucleotide exchange factor activity [GO:0005089]; plant-type cell wall organization [GO:0009664]; root hair elongation [GO:0048767] TISSUE SPECIFICITY: Expressed in root vascular tissue and trichoblast cell files. Expressed in root metaxylem cell files. Expressed in guard cells of cotyledons, rosette leaves, sepals, petal, stigmas and siliques. Expressed in root metaxylem cell files. {ECO:0000269|PubMed:22500990, ECO:0000269|PubMed:22984069}. locus:2050699; AT2G45890 PRONE (Plant-specific Rop nucleotide exchanger) NA NA NA NA NA NA NA ENOG411EBYJ F4IQK9 F4IQK9_ARATH Major facilitator superfamily protein 51874 Major facilitator superfamily protein integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2046313; AT2G18590 Major Facilitator Superfamily NA NA NA NA NA NA NA ENOG411EBYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EBYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aspartic protease At2g35615-like NA NA NA NA NA NA NA ENOG411EBYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411EBYG Q8L7H5,A0A1P8B4G6,A0A1P8B4I2 Q8L7H5_ARATH,A0A1P8B4G6_ARATH,A0A1P8B4I2_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g17483),Alpha/beta-Hydrolases superfamily protein ARA:AT4G17483-MONOMER; R-ATH-75105; 33275,25310,30262 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At4g17483),Alpha/beta-Hydrolases superfamily protein intracellular membrane-bounded organelle [GO:0043231]; palmitoyl hydrolase activity [GO:0098599]; thiolester hydrolase activity [GO:0016790],palmitoyl hydrolase activity [GO:0098599] locus:2129086; AT4G17483 Palmitoyl protein thioesterase family NA NA NA NA NA NA NA ENOG411EBYA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EBYW SPL10,SPL11 Q8S9L0,Q9FZK0,A0A1P8AWI8 SPL10_ARATH,SPL11_ARATH,A0A1P8AWI8_ARATH Squamosa promoter-binding-like protein 10,Squamosa promoter-binding-like protein 11,Squamosa promoter binding protein-like 10 Wider lamina in the third cauline leaf than the respective single mutants. Increased number of trichomes on sepals than the respective single mutants.,Cauline leaves and sepal trichomes show morphological defects.Specifically leaf lamina is wider than WT in the third cauline leaf. These phenotypes indicate a delayed vegetative - to reproductive phase change.,Wider lamina in the third cauline leaf than the respective single mutants. Wide cauline leaves; Increased trichome number on sepals-M. Ohme-Takagi-2009,Wide cauline leaves-M. Ohme-Takagi-2009 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. 44159,43864,38877 Squamosa promoter-binding-like protein 10,Squamosa promoter-binding-like protein 11,Squamosa promoter binding protein-like 10 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; leaf shaping [GO:0010358]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872] DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. locus:2016014;,locus:2015999; AT1G27370,AT1G27360 Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity) NA NA NA NA NA NA NA ENOG411EBYS O65708 O65708_ARATH Chitin synthase, putative (DUF1218) (Uncharacterized protein AT4g19370) 24387 Chitin synthase, putative (DUF1218) (Uncharacterized protein AT4g19370) integral component of membrane [GO:0016021]; membrane [GO:0016020]; lignin metabolic process [GO:0009808] locus:2140391; AT4G19370 Protein of unknown function (DUF1218) NA NA NA NA NA NA NA ENOG411EBYP CKL9,CKL7 Q9ZWB3,Q9FFH8 CKL9_ARATH,CKL7_ARATH Casein kinase 1-like protein 9 (EC 2.7.11.1) (Dual specificity kinase 1) (Protein CASEIN KINASE I-LIKE 9) (Protein CASEIN KINASE I-LIKE 9 ALPHA) (Protein CASEIN KINASE I-LIKE 9 BETA),Casein kinase 1-like protein 7 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 7) FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Can phosphorylate casein on serine and threonine residues, and poly(Glu,Tyr) in vitro. {ECO:0000269|PubMed:7527390}.,FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins. {ECO:0000250|UniProtKB:P48730}. 2.7.11.1 53002,53593 Casein kinase 1-like protein 9 (EC 2.7.11.1) (Dual specificity kinase 1) (Protein CASEIN KINASE I-LIKE 9) (Protein CASEIN KINASE I-LIKE 9 ALPHA) (Protein CASEIN KINASE I-LIKE 9 BETA),Casein kinase 1-like protein 7 (EC 2.7.11.1) (Protein CASEIN KINASE I-LIKE 7) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; endocytosis [GO:0006897]; peptidyl-serine phosphorylation [GO:0018105]; regulation of cell shape [GO:0008360] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:7527390}. locus:2024147;,locus:2167634; AT1G03930,AT5G44100 casein kinase i-like NA NA NA NA NA NA NA ENOG411EBY8 SCPL47 Q9FFB0 SCP47_ARATH Serine carboxypeptidase-like 47 (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. 3.4.16.- 56543 Serine carboxypeptidase-like 47 (EC 3.4.16.-) extracellular region [GO:0005576]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603] TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:15908604}. locus:2172711; AT5G22980 serine carboxypeptidase-like 47 NA NA NA NA NA NA NA ENOG411EBY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box associated Os04g0589300 protein A0A0N7KJL2 A0A0N7KJL2_ORYSJ Os04g0589300 OSNPB_040589300 ENOG411EBY6 CASP-like protein 5A1 Q6NPF8,A0A1P8B2T8 CSPL9_ARATH,A0A1P8B2T8_ARATH CASP-like protein 5A1 (AtCASPL5A1),CASP-like protein 19234,22507 CASP-like protein 5A1 (AtCASPL5A1),CASP-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2061743; AT2G37200 Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411EBY7 O48706,Q9SIR9,Q9M1T7 SPZ3_ARATH,SPZ10_ARATH,SPZ4_ARATH Serpin-Z3 (ArathZ3),Serpin-Z10 (ArathZ10),Serpin-Z4 (ArathZ4) FUNCTION: Probable serine protease inhibitor. {ECO:0000250}. 43221,42724,44170 Serpin-Z3 (ArathZ3),Serpin-Z10 (ArathZ10),Serpin-Z4 (ArathZ4) extracellular space [GO:0005615]; serine-type endopeptidase inhibitor activity [GO:0004867] locus:2066316;,locus:2059585;,locus:2096910; AT2G26390,AT2G25240,AT3G45220 regulation of proteolysis NA NA NA NA NA NA NA ENOG411EBY4 BZIP24 Q8GTS1,F4J5N9,A0A1I9LLN0 BZP24_ARATH,F4J5N9_ARATH,A0A1I9LLN0_ARATH Basic leucine zipper 24 (AtbZIP24) (bZIP protein 24),Basic leucine zipper 24 FUNCTION: Transcription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. MISCELLANEOUS: Plants silencing BZIP24 show enhanced tolerance to salt stress (PubMed:18703123, PubMed:19248824). Enhanced salt stress tolerance in silencing plants is characterized by enhanced root and leaves development and reduced sodium accumulation in plants (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. 26091,26219,21712 Basic leucine zipper 24 (AtbZIP24) (bZIP protein 24),Basic leucine zipper 24 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of response to salt stress [GO:1901001]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; hyperosmotic salinity response [GO:0042538]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Expressed in young leaves and cauline leaves. {ECO:0000269|PubMed:19248824}. locus:2083760; AT3G51960 Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EBY5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF239) Os08g0411100 protein A0A0P0XFW6 A0A0P0XFW6_ORYSJ Os08g0411100 OSNPB_080411100 ENOG411EBY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411EBY3 ABCG13 Q9C8J8 AB13G_ARATH ABC transporter G family member 13 (ABC transporter ABCG.13) (AtABCG13) (White-brown complex homolog protein 13) (AtWBC13) Flowers are seriously distorted in petal morphology and display petal-to-sepal and sepal-to-sepal fusions during early flower development. The fusions disappear during later flower development.,Petal epidermal cells do not have a wt conical structure and are flattened. Epidermal cuticular ridges on these cells are completely absent. R-ATH-1369062; 75220 ABC transporter G family member 13 (ABC transporter ABCG.13) (AtABCG13) (White-brown complex homolog protein 13) (AtWBC13) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; cutin transport [GO:0080051]; petal epidermis patterning [GO:0080172]; response to salt stress [GO:0009651] locus:2033939; AT1G51460 Abc transporter family NA NA NA NA NA NA NA ENOG411EBY0 PIRL5 Q5G5E0 PIRL5_ARATH Plant intracellular Ras-group-related LRR protein 5 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. 58742 Plant intracellular Ras-group-related LRR protein 5 plasma membrane [GO:0005886]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Widely expressed but preferentially in roots. {ECO:0000269|PubMed:15809230}. locus:2827587; AT2G17440 leucine-rich repeat family protein NA NA NA NA NA NA NA ENOG411EBY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain NA NA NA NA NA NA NA ENOG411EGZZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain NA NA NA NA NA NA NA ENOG411EGZR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1234 NA NA NA NA NA NA NA ENOG411EGZS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0537500 protein Q6ZD40 Q6ZD40_ORYSJ Os08g0537500 OsJ_28102 OSNPB_080537500 P0665C04.27 ENOG411EGZP DEP Q9FVT1,Q3ECE3 Q9FVT1_ARATH,Q3ECE3_ARATH RING/U-box superfamily protein (Uncharacterized protein T8L23.19),At1g70910 (RING/U-box superfamily protein) Complete loss of seed dormancy-F. Gubler-2009 19864,18271 RING/U-box superfamily protein (Uncharacterized protein T8L23.19),At1g70910 (RING/U-box superfamily protein) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; seed dormancy process [GO:0010162] locus:2206540;,locus:2013945; AT1G57730,AT1G70910 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EGZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZV ATGRP19,GRP19 Q42574,A8MSB7,B3H6L6 Q42574_ARATH,A8MSB7_ARATH,B3H6L6_ARATH Oleosin 10683,9616,7262 Oleosin integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid binding [GO:0008289]; lipid storage [GO:0019915],integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511] locus:2183414; AT5G07550 glycine-rich protein NA NA NA NA NA NA NA ENOG411EGZT Q8GWC0 Q8GWC0_ARATH Expressed protein (Uncharacterized protein At2g14247) 8652 Expressed protein (Uncharacterized protein At2g14247) locus:1006230135; AT2G14247 NA NA NA NA NA NA NA NA ENOG411EGZJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0560700 protein (Fragment) A0A0P0X7Y3,A0A0P0X8A2 A0A0P0X7Y3_ORYSJ,A0A0P0X8A2_ORYSJ Os07g0560700 OSNPB_070560700 ENOG411EGZB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0197101 protein A0A0P0XSJ0 A0A0P0XSJ0_ORYSJ Os10g0197101 OSNPB_100197101 ENOG411EGZF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine dehydratase alpha chain NA NA NA NA NA NA NA ENOG411EGZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HSF-type DNA-binding NA NA NA NA NA NA NA ENOG411EGZD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bowman-Birk type wound-induced proteinase inhibitor WIP1-like NA NA NA NA NA NA NA ENOG411EGZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZ9 A7REG9,Q3EBD8,A7REG8,A8MRQ7,A8MRI2,A8MRE2,A8MQI0,A8MQL3,A8MRV4,Q2V3Z5 A7REG9_ARATH,Q3EBD8_ARATH,A7REG8_ARATH,A8MRQ7_ARATH,A8MRI2_ARATH,A8MRE2_ARATH,A8MQI0_ARATH,A8MQL3_ARATH,A8MRV4_ARATH,Q2V3Z5_ARATH ECA1-like gametogenesis related family protein,At3g01325 (Expressed protein),ECA1 gametogenesis related family protein 11702,11552,11276,11919,12146,11249,11792,10984,12015 ECA1-like gametogenesis related family protein,At3g01325 (Expressed protein),ECA1 gametogenesis related family protein locus:4010713719;,locus:1006230252;,locus:4010713723;,locus:4010713784;,locus:4010713721;,locus:4010713720;,locus:4010713718;,locus:4010713722;,locus:4010713724;,locus:1009023271; AT3G01324,AT3G01325,AT3G01329,AT3G27425,AT3G01327,AT3G01326,AT3G01322,AT3G01328,AT3G01331,AT3G01323 gametogenesis related family protein NA NA NA NA NA NA NA ENOG411EGZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: synthase Lupeol synthase, putative (Os11g0286400 protein),Beta-amyrin synthase-like (Os06g0483200 protein),Os02g0140500 protein Q53MU8,Q67VR1,A0A0P0VEQ6 Q53MU8_ORYSJ,Q67VR1_ORYSJ,A0A0P0VEQ6_ORYSJ Os11g0286400 LOC_Os11g18340 OsJ_33651 OSNPB_110286400,Os06g0483200 OSJNBa0040M10.27 OSJNBb0026F02.4 OSNPB_060483200,Os02g0140500 OSNPB_020140500 ENOG411EGZ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0140900 protein A0A0P0X2L6 A0A0P0X2L6_ORYSJ Os07g0140900 OSNPB_070140900 ENOG411EGZ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0194100 protein (Fragment) A0A0P0Y7T5 A0A0P0Y7T5_ORYSJ Os12g0194100 OSNPB_120194100 ENOG411EGZ6 RL4 Q1G3C4 RADL4_ARATH Protein RADIALIS-like 4 (AtRL4) (Protein RAD-like 4) FUNCTION: Probable transcription factor. {ECO:0000250}. MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily. {ECO:0000305|PubMed:16463103}. 8983 Protein RADIALIS-like 4 (AtRL4) (Protein RAD-like 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. locus:4010713631; AT2G18328 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EGZ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGZ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA polymerase delta subunit 4 Os08g0543800 protein Q6ZBI3 Q6ZBI3_ORYSJ Os08g0543800 OsJ_28150 OSNPB_080543800 P0623F08.13 ENOG411EGZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP dependent DNA ligase domain NA NA NA NA NA NA NA ENOG411DTN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Expressed protein (Os10g0165000 protein),Os01g0133600 protein,Os01g0133700 protein Q7XGI7,A0A0N7KCA1,A0A0P0UXM6 Q7XGI7_ORYSJ,A0A0N7KCA1_ORYSJ,A0A0P0UXM6_ORYSJ Os10g0165000 OSJNBa0089D15.25 LOC_Os10g08280 Os10g0165000 OsJ_30822 OSNPB_100165000,Os01g0133600 OSNPB_010133600,Os01g0133700 OSNPB_010133700 ENOG411DTN3 Q8L9J9 CAES_ARATH Probable carbohydrate esterase At4g34215 (EC 3.1.-.-) 3.1.-.- 28358 Probable carbohydrate esterase At4g34215 (EC 3.1.-.-) hydrolase activity [GO:0016787] locus:505006557; AT4G34215 Domain of unknown function (DUF303) OSJNBa0009K15.9 protein (Os04g0276600 protein) (cDNA clone:J013129H13, full insert sequence) Q0JEG9 Q0JEG9_ORYSJ Os04g0276600 Os04g0276600 OSJNBa0009K15.9 OSNPB_040276600 ENOG411DTN0 AtC3H15,AtC3H14 Q9C9F5,Q9C9N3,A0A1P8ARY2,A0A1P8ARU8 C3H15_ARATH,C3H14_ARATH,A0A1P8ARY2_ARATH,A0A1P8ARU8_ARATH Zinc finger CCCH domain-containing protein 15 (AtC3H15),Zinc finger CCCH domain-containing protein 14 (AtC3H14),Zinc finger C-x8-C-x5-C-x3-H type family protein R-ATH-450385; 34227,35109,21937,25392 Zinc finger CCCH domain-containing protein 15 (AtC3H15),Zinc finger CCCH domain-containing protein 14 (AtC3H14),Zinc finger C-x8-C-x5-C-x3-H type family protein cytosol [GO:0005829]; metal ion binding [GO:0046872]; mRNA 3'-UTR binding [GO:0003730]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; regulation of transcription, DNA-templated [GO:0006355],cytosol [GO:0005829]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; negative regulation of secondary cell wall biogenesis [GO:1901347]; negative regulation of unidimensional cell growth [GO:0051511]; positive regulation of transcription, DNA-templated [GO:0045893] locus:2199352;,locus:2033384; AT1G68200,AT1G66810 zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 9 (OsC3H9),Zinc finger CCCH domain-containing protein 39 (OsC3H39),Os01g0645000 protein (Fragment) A2ZVY5,Q6L5G1,A0A0P0V5U0 C3H9_ORYSJ,C3H39_ORYSJ,A0A0P0V5U0_ORYSJ Os01g0645000 LOC_Os01g45730 OsJ_002707,Os05g0576300 LOC_Os05g50080 OJ1126_B10.1 OJ1268_B08.22 OsJ_19647,Os01g0645000 OSNPB_010645000 ENOG411DTN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like Os10g0475900 protein (Putative polyubiquitin) (Ubiquitin family protein, expressed) (cDNA clone:J033069L14, full insert sequence) Q7XDE7 Q7XDE7_ORYSJ Os10g0475900 LOC_Os10g33620 Os10g0475900 OSJNBb0044B19.4 OSNPB_100475900 ENOG411DTN6 Q1G3Q4,A0A1P8B0J5 Q1G3Q4_ARATH,A0A1P8B0J5_ARATH PLATZ transcription factor family protein 28849,28551 PLATZ transcription factor family protein locus:1009023224; AT2G12646 zinc-binding protein Os02g0183000 protein A0A0P0VFM4 A0A0P0VFM4_ORYSJ Os02g0183000 OSNPB_020183000 ENOG411DTN7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0715900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q8S1M4 Q8S1M4_ORYSJ Os01g0715900 Os01g0715900 OsJ_03251 OSNPB_010715900 P0683B11.6 ENOG411DTN4 PAB1,PAB2 O23708,Q8L4A7 PSA2A_ARATH,PSA2B_ARATH Proteasome subunit alpha type-2-A (EC 3.4.25.1) (20S proteasome alpha subunit B-1) (Proteasome component 3),Proteasome subunit alpha type-2-B (EC 3.4.25.1) (20S proteasome alpha subunit B-2) FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-6798695;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 25701,25733 Proteasome subunit alpha type-2-A (EC 3.4.25.1) (20S proteasome alpha subunit B-1) (Proteasome component 3),Proteasome subunit alpha type-2-B (EC 3.4.25.1) (20S proteasome alpha subunit B-2) cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; response to zinc ion [GO:0010043]; ubiquitin-dependent protein catabolic process [GO:0006511],cytosol [GO:0005829]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; defense response to bacterium [GO:0042742]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2032820;,locus:2207340; AT1G16470,AT1G79210 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity Proteasome subunit alpha type-2 (EC 3.4.25.1) (20S proteasome alpha subunit B) (20S proteasome subunit alpha-2),Proteasome subunit alpha type (EC 3.4.25.1) Q10KF0,Q6H852 PSA2_ORYSJ,Q6H852_ORYSJ PAB1 Os03g0387100 LOC_Os03g26970 OsJ_11088 OSJNBb0058G04.11,Os02g0634900 Os02g0634900 OJ1626_B09.4 OsJ_07639 OSNPB_020634900 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU000551}. ENOG411DTN5 Q7XZS3 Q7XZS3_ARATH At2g28660 (Chloroplast-targeted copper chaperone protein) (Putative chloroplast-targeted copper chaperone) 29002 At2g28660 (Chloroplast-targeted copper chaperone protein) (Putative chloroplast-targeted copper chaperone) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2065526; AT2G28660 heavy metal-associated domain containing protein expressed Heavy metal-associated domain containing protein, expressed (Os03g0819400 protein) (cDNA clone:J023043H06, full insert sequence) Q84TB9 Q84TB9_ORYSJ OJ1754_E06.11 LOC_Os03g60480 Os03g0819400 OsJ_13132 OSNPB_030819400 ENOG411DTN8 DREB2C,DREB2H Q8LFR2,Q9SIZ0,A0A1P8B2A0,A0A1P8B2B1,A0A1P8B298,A0A1P8B1T1 DRE2C_ARATH,DRE2H_ARATH,A0A1P8B2A0_ARATH,A0A1P8B2B1_ARATH,A0A1P8B298_ARATH,A0A1P8B1T1_ARATH Dehydration-responsive element-binding protein 2C (Protein DREB2C),Putative dehydration-responsive element-binding protein 2H (Protein DREB2H),Integrase-type DNA-binding superfamily protein FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.,FUNCTION: Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. 37830,17792,31250,38611,33009,18493 Dehydration-responsive element-binding protein 2C (Protein DREB2C),Putative dehydration-responsive element-binding protein 2H (Protein DREB2H),Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; heat acclimation [GO:0010286]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; heat acclimation [GO:0010286]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2063073;,locus:2063088; AT2G40340,AT2G40350 element-binding protein Dehydration-responsive element-binding protein 2A (OsDREB2A) Q0JQF7 DRE2A_ORYSJ DREB2A ERF40 Os01g0165000 LOC_Os01g07120 OsJ_000494 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:12609047}. ENOG411DTN9 O65433 O65433_ARATH Uncharacterized protein AT4g20190 (Uncharacterized protein F1C12.110) 42793 Uncharacterized protein AT4g20190 (Uncharacterized protein F1C12.110) locus:2120407; AT4G20190 NA Os03g0315301 protein,Os06g0574000 protein B9F846,A0A0P0WY49 B9F846_ORYSJ,A0A0P0WY49_ORYSJ Os03g0315301 OsJ_10619 OSNPB_030315301,Os06g0574000 OSNPB_060574000 ENOG411DTNR PI4KG6,PI4KG7,PI4KG5,PI4K GAMMA 7 Q8W4R8,Q9SI52,Q9C671,F4IU74 P4KG6_ARATH,P4KG7_ARATH,P4KG5_ARATH,F4IU74_ARATH Phosphatidylinositol 4-kinase gamma 6 (AtPI4Kgamma6) (PI-4Kgamma6) (PI4K gamma 6) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma 7 (AtPI4Kgamma7) (PI-4Kgamma7) (PI4K gamma 7) (EC 2.7.1.67) (Ubiquitin-like domain kinase gamma 7) (UbDK gamma 7),Phosphatidylinositol 4-kinase gamma 5 (AtPI4Kgamma5) (PI-4Kgamma5) (PI4K gamma 5) (EC 2.7.1.67),Phosphoinositide 4-kinase gamma 7 FUNCTION: The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3). {ECO:0000250}.,FUNCTION: The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3) (By similarity). Undergoes autophosphorylation and phosphorylates serine/threonine residues of protein substrates. {ECO:0000250, ECO:0000269|PubMed:17880284}. 2.7.1.67 69572,72762,70259,59682 Phosphatidylinositol 4-kinase gamma 6 (AtPI4Kgamma6) (PI-4Kgamma6) (PI4K gamma 6) (EC 2.7.1.67),Phosphatidylinositol 4-kinase gamma 7 (AtPI4Kgamma7) (PI-4Kgamma7) (PI4K gamma 7) (EC 2.7.1.67) (Ubiquitin-like domain kinase gamma 7) (UbDK gamma 7),Phosphatidylinositol 4-kinase gamma 5 (AtPI4Kgamma5) (PI-4Kgamma5) (PI4K gamma 5) (EC 2.7.1.67),Phosphoinositide 4-kinase gamma 7 1-phosphatidylinositol 4-kinase activity [GO:0004430]; ATP binding [GO:0005524],1-phosphatidylinositol 4-kinase activity [GO:0004430]; ATP binding [GO:0005524]; phosphatidylinositol phosphorylation [GO:0046854]; protein autophosphorylation [GO:0046777],1-phosphatidylinositol 4-kinase activity [GO:0004430]; ATP binding [GO:0005524]; protein histidine kinase binding [GO:0043424],kinase activity [GO:0016301] locus:2023865;,locus:2056799;,locus:2028798; AT1G13640,AT2G03890,AT1G26270 phosphatidylinositol 4-kinase type 2-beta Os09g0474800 protein (Phosphatidylinositol 3-and 4-kinase family-like) (cDNA clone:J013088A05, full insert sequence) (cDNA clone:J023113B13, full insert sequence),Os06g0283400 protein (Phosphatidylinositol 3-and 4-kinase family-like),OSJNBa0043A12.14 protein (Os04g0668700 protein),Os04g0668700 protein (Fragment) Q69JJ2,Q5VMR5,Q7XR71,A0A0P0WG83 Q69JJ2_ORYSJ,Q5VMR5_ORYSJ,Q7XR71_ORYSJ,A0A0P0WG83_ORYSJ Os09g0474800 OSJNBa0026C08.31 OSNPB_090474800,Os06g0283400 OsJ_20987 OSJNBa0021H05.28 OSNPB_060283400,Os04g0668700 OSJNBa0043A12.14 OSNPB_040668700,Os04g0668700 OSNPB_040668700 ENOG411DTNS F4J2Z0,F4J1U2 F4J2Z0_ARATH,F4J1U2_ARATH Glutamate NMDA receptor subunit epsilon-1, putative (DUF3598) 38195,44676 Glutamate NMDA receptor subunit epsilon-1, putative (DUF3598) cell division [GO:0051301]; regulation of barrier septum assembly [GO:0032955] locus:2094797; AT3G29185 Domain of unknown function (DUF3598) Os03g0758900 protein,Os08g0291100 protein,Os03g0758950 protein (Putative DNA-binding protein) (WRKY transcription factor 4) (WRKY7) Q9AUW4,B9G045,Q9AUW5 Q9AUW4_ORYSJ,B9G045_ORYSJ,Q9AUW5_ORYSJ Os03g0758900 OsJ_12661 OSJNBa0040E01.11 OSJNBb0048A17.3 OSNPB_030758900,Os08g0291100 OsJ_26772 OSNPB_080291100,Os03g0758950 WRKY4 OSJNBa0040E01.10 OSJNBb0048A17.12 OSNPB_030758950 ENOG411DTNP CML49,CML50 Q8W4L0,Q9FYE4,F4J2M3,A0A1I9LRS6 CML49_ARATH,CML50_ARATH,F4J2M3_ARATH,A0A1I9LRS6_ARATH Probable calcium-binding protein CML49 (Calmodulin-like protein 49),Probable calcium-binding protein CML50 (Calmodulin-like protein 50),Calcium-binding EF-hand family protein FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-1474228;R-ATH-418359;R-ATH-425561;R-ATH-5578775;R-ATH-6798695;R-ATH-936837; 35302,37113,34526,40689 Probable calcium-binding protein CML49 (Calmodulin-like protein 49),Probable calcium-binding protein CML50 (Calmodulin-like protein 50),Calcium-binding EF-hand family protein cytoplasm [GO:0005737]; calcium ion binding [GO:0005509]; calcium-dependent cysteine-type endopeptidase activity [GO:0004198]; proteolysis [GO:0006508],calcium ion binding [GO:0005509] locus:2076229;,locus:2146703; AT3G10300,AT5G04170 calcium-binding protein EF hand family protein, expressed (Os12g0137100 protein) (cDNA clone:001-025-C08, full insert sequence),EF hand family protein, expressed (Os11g0140600 protein) (cDNA clone:J033128E16, full insert sequence) Q2QY10,Q2RAR8 Q2QY10_ORYSJ,Q2RAR8_ORYSJ Os12g0137100 LOC_Os12g04240 Os12g0137100 OSNPB_120137100,LOC_Os11g04480 Os11g0140600 OSNPB_110140600 ENOG411DTNQ ACHT5 Q9XFI1,A0A1P8B9R7 TRL12_ARATH,A0A1P8B9R7_ARATH Thioredoxin-like 1-2, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 5) (AtACHT5) (Lilium-type thioredoxin 1-2),Atypical CYS HIS rich thioredoxin 5 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 26890,20427 Thioredoxin-like 1-2, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 5) (AtACHT5) (Lilium-type thioredoxin 1-2),Atypical CYS HIS rich thioredoxin 5 chloroplast [GO:0009507]; cell redox homeostasis [GO:0045454]; oxidation-reduction process [GO:0055114],cell [GO:0005623]; cell redox homeostasis [GO:0045454] locus:2163168; AT5G61440 Thioredoxin NA NA NA NA NA NA NA ENOG411DTNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) Q5JM51 Q5JM51_ORYSJ Os01g0727100 Os01g0727100 OSNPB_010727100 P0042A10.33 ENOG411DTNW Q9SFG3 Q9SFG3_ARATH At3g05990 (F2O10.5 protein) (Leucine-rich repeat (LRR) family protein) (Uncharacterized protein At3g05990) 56234 At3g05990 (F2O10.5 protein) (Leucine-rich repeat (LRR) family protein) (Uncharacterized protein At3g05990) locus:2083023; AT3G05990 receptor-like serine threonine-protein kinase Os05g0393100 protein (cDNA clone:J033046L15, full insert sequence) Q60ER5 Q60ER5_ORYSJ Os05g0393100 OJ1764_D01.17 OSNPB_050393100 ENOG411DTNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat OSJNBa0027H06.17 protein (Os04g0110500 protein) (cDNA clone:J033120H12, full insert sequence) Q7XSV8 Q7XSV8_ORYSJ Os04g0110500 OsJ_13541 OSJNBa0027H06.17 OSNPB_040110500 ENOG411DTNU MEKK2,MEKK1,MEKK3 O81472,Q39008,Q9M0T3,A0A1P8B727,A0A1P8B722 MP3K2_ARATH,M3K1_ARATH,Q9M0T3_ARATH,A0A1P8B727_ARATH,A0A1P8B722_ARATH Mitogen-activated protein kinase kinase kinase 9 (MAP kinase kinase kinase 9) (EC 2.7.11.24) (MAPK/ERK kinase kinase 2) (AtMEKK2) (Protein SUPPRESSOR OF MKK1 MKK2 1),Mitogen-activated protein kinase kinase kinase 1 (ARAKIN) (AtMEKK1) (MAP kinase kinase kinase 1) (EC 2.7.11.25),At4g08470 (MAPK/ERK kinase kinase 3) (Putative mitogen-activated protein kinase),MAPK/ERK kinase kinase 3 DISRUPTION PHENOTYPE: No visible phenotype (PubMed:20668060, PubMed:23695980). Suppresses the cell death and defense responses not only in mkk1 mkk2 but also in mekk1 and mpk4 mutants (PubMed:22643122, PubMed:23695980). In the triple mutant mekk1 mekk2 mekk3, no appearent phenotype, but meek1-like dwarf phenotype when complemented by MEKK2 (PubMed:23695980). The triple mutant mekk1 mekk2 mekk3 is almost insensitive to external glutamate (L-Glu) on root growth (PubMed:23574009). {ECO:0000269|PubMed:20668060, ECO:0000269|PubMed:22643122, ECO:0000269|PubMed:23574009, ECO:0000269|PubMed:23695980}. FUNCTION: Triggers SUMM2-mediated immune responses, including cell death and defense responses. Probably inhibited by the MEKK1-MKK1/ MKK2-MPK4 kinase cascade to adjust plant defense (PubMed:22643122, PubMed:23695980). Seems to contribute in transducing external glutamate (L-Glu) signal that elicits large-scale changes in root architecture (PubMed:23574009). {ECO:0000269|PubMed:22643122, ECO:0000269|PubMed:23574009, ECO:0000269|PubMed:23695980}.,FUNCTION: The MEKK1, MKK1/MKK2 and MPK4 function in a signaling pathway that modulates the expression of genes responding to biotic and abiotic stresses and also plays an important role in pathogen defense by negatively regulating innate immunity. Involved in the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6) downstream of bacterial flagellin receptor FLS2. May be involved in the cold and salinity stress-mediated MAP kinase signaling cascade (MEKK1, MKK1/MKK2 and MPK4/MPK6). Activates by phosphorylation the downstream MKK2, MKK4 and MKK5 in a calcium-dependent manner. {ECO:0000269|PubMed:11875555, ECO:0000269|PubMed:15225555, ECO:0000269|PubMed:18982020, ECO:0000269|PubMed:23857079}. 2.7.11.25; 2.7.11.24,2.7.11.25 84974,66024,62308,52976,53834 Mitogen-activated protein kinase kinase kinase 9 (MAP kinase kinase kinase 9) (EC 2.7.11.24) (MAPK/ERK kinase kinase 2) (AtMEKK2) (Protein SUPPRESSOR OF MKK1 MKK2 1),Mitogen-activated protein kinase kinase kinase 1 (ARAKIN) (AtMEKK1) (MAP kinase kinase kinase 1) (EC 2.7.11.25),At4g08470 (MAPK/ERK kinase kinase 3) (Putative mitogen-activated protein kinase),MAPK/ERK kinase kinase 3 cytoplasm [GO:0005737]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; innate immune response [GO:0045087]; regulation of defense response [GO:0031347]; regulation of mitotic cell cycle [GO:0007346]; response to L-glutamate [GO:1902065]; root system development [GO:0022622]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],endosome [GO:0005768]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; kinase binding [GO:0019900]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; cold acclimation [GO:0009631]; innate immune response [GO:0045087]; MAPK cascade [GO:0000165]; protein autophosphorylation [GO:0046777]; regulation of mitotic cell cycle [GO:0007346]; response to cold [GO:0009409]; response to L-glutamate [GO:1902065]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; root meristem growth [GO:0010449]; root system development [GO:0022622]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed at least in rosette leaves (at protein level). {ECO:0000269|PubMed:23695980}. locus:2133539;,locus:2133559;,locus:2133529; AT4G08480,AT4G08500,AT4G08470 Mitogen-activated protein kinase kinase kinase Mitogen-activated protein kinase-like (Os02g0769700 protein) (cDNA clone:002-181-D12, full insert sequence),Mitogen-activated protein kinase 1, putative, expressed (Os03g0262200 protein),Mitogen-activated protein kinase 1, putative, expressed (Os03g0703400 protein),Os04g0340100 protein,Os04g0339800 protein Q6ZGI4,Q10NR1,Q75I98,B9FEH9,A0A0P0W9D8 Q6ZGI4_ORYSJ,Q10NR1_ORYSJ,Q75I98_ORYSJ,B9FEH9_ORYSJ,A0A0P0W9D8_ORYSJ Os02g0769700 Os02g0769700 OJ1079_F11.22 OJ1767_D02.37 OSNPB_020769700,Os03g0262200 LOC_Os03g15570 OSNPB_030262200,OSJNBa0004L11.12 LOC_Os03g49640 Os03g0703400 OSNPB_030703400,Os04g0340100 OsJ_14325 OSNPB_040340100,Os04g0339800 OSNPB_040339800 ENOG411DTNZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF632) Os04g0562800 protein A0A0P0WDH5 A0A0P0WDH5_ORYSJ Os04g0562800 OSNPB_040562800 ENOG411DTNX RPL11 Q9MAP3,Q9FHM3 RK11_ARATH,Q9FHM3_ARATH 50S ribosomal protein L11, chloroplastic (CL11),50S ribosomal protein L11-like (Ribosomal protein L11 family protein) Mutant plants had pale-green cotyledons and leaves.,Relative decrease the effective quantum yield of PSII (&,Under optimal greenhouse conditions the size and growth rate of the mutant were reduced by up to 75% relative to wild-type. Furthermore an average delay of about 5 days in flowering time was observed for mutant plants.,Defective in both mitochondrial and plastid gene expression.,Double mutant leaves were identical to those of the prpl11-1 single mutant in terms of thylakoid protein composition and photosynthetic performance.,No increase in H2O2 content in light- or dark-adapted mutant plants.,Pale-green leaves and a drastic reduction in size.,The photosynthetic performance of the double mutant is identical to that of prpl11-1 plants (Fv/Fm 0.69 versus 0.79 in the wild type; ΦII 0.53 versus 0.75 in the wild type; 1-qP 0.06 versus 0.05 in the wild type).,prors1-like transcriptional response. Pale green; Slow growth-D. Leister-2001 FUNCTION: Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. {ECO:0000250}. 23148,19329 50S ribosomal protein L11, chloroplastic (CL11),50S ribosomal protein L11-like (Ribosomal protein L11 family protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:2037970;,locus:2153162; AT1G32990,AT5G51610 ribosomal protein L11 Os03g0122200 protein (Fragment) A0A0P0VSE5 A0A0P0VSE5_ORYSJ Os03g0122200 OSNPB_030122200 ENOG411DTNY Q9SKZ5,A0A1P8AYE7 FBT1_ARATH,A0A1P8AYE7_ARATH Folate-biopterin transporter 1, chloroplastic,Major facilitator superfamily protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16162503}. FUNCTION: Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. {ECO:0000269|PubMed:16162503, ECO:0000269|PubMed:19923217}. 60707,46037 Folate-biopterin transporter 1, chloroplastic,Major facilitator superfamily protein chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; 5-formyltetrahydrofolate transporter activity [GO:0015231]; folic acid transporter activity [GO:0008517]; methotrexate transporter activity [GO:0015350]; methotrexate transport [GO:0051958],integral component of membrane [GO:0016021]; transport [GO:0006810] TISSUE SPECIFICITY: Constitutively expressed at low level. {ECO:0000269|PubMed:16162503}. locus:2045462; AT2G32040 transporter Os07g0172900 protein (Putative integral membrane protein),Os03g0795000 protein (Fragment) Q6ZA55,Q0DMT0 Q6ZA55_ORYSJ,Q0DMT0_ORYSJ P0496D04.34-1 Os07g0172900 OSNPB_070172900,Os03g0795000 OSNPB_030795000 ENOG411DTNB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter G family member ABC transporter (Os09g0401100 protein) G9I8W9 G9I8W9_ORYSJ STR1 Os09g0401100 OSNPB_090401100 ENOG411DTNC Q8GWM4,A0A1I9LMB7,A0A1I9LMB8,A0A1I9LMB6,F4IY04 Q8GWM4_ARATH,A0A1I9LMB7_ARATH,A0A1I9LMB8_ARATH,A0A1I9LMB6_ARATH,F4IY04_ARATH Aldolase-type TIM barrel family protein (Uncharacterized protein At3g49640/T9C5_230),Aldolase-type TIM barrel family protein,tRNA-dihydrouridine synthase (EC 1.3.1.-) FUNCTION: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000256|PIRNR:PIRNR006621}. 1.3.1.- 31907,28753,33318,27579,36471 Aldolase-type TIM barrel family protein (Uncharacterized protein At3g49640/T9C5_230),Aldolase-type TIM barrel family protein,tRNA-dihydrouridine synthase (EC 1.3.1.-) flavin adenine dinucleotide binding [GO:0050660]; tRNA dihydrouridine synthase activity [GO:0017150] locus:2114713; AT3G49640 Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity) tRNA-dihydrouridine synthase (EC 1.3.1.-) Q7XUN7 Q7XUN7_ORYSJ Os04g0531300 OSJNBa0081C01.15 OSNPB_040531300 FUNCTION: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000256|PIRNR:PIRNR006621}. ENOG411DTNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os06g0531400 protein B9FTL2 B9FTL2_ORYSJ Os06g0531400 OsJ_21562 OSNPB_060531400 ENOG411DTNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RINGv Os08g0100400 protein,Os08g0100400 protein (Fragment) A0A0P0XBF7,A0A0P0XB08 A0A0P0XBF7_ORYSJ,A0A0P0XB08_ORYSJ Os08g0100400 OSNPB_080100400 ENOG411DTNG ALMT2,ALMT8,ALMT1,ALMT7 Q9SJE8,Q9SRM9,Q9SJE9,Q9XIN1,A0A1P8B0R6,A0A1I9LRV2 ALMT2_ARATH,ALMT8_ARATH,ALMT1_ARATH,ALMT7_ARATH,A0A1P8B0R6_ARATH,A0A1I9LRV2_ARATH Aluminum-activated malate transporter 2 (AtALMT2),Aluminum-activated malate transporter 8 (AtALMT8),Aluminum-activated malate transporter 1 (AtALMT1),Aluminum-activated malate transporter 7 (AtALMT7),Aluminum activated malate transporter family protein DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Lack of aluminum-activated malate release and shorter roots when submitted to aluminum stress. {ECO:0000269|PubMed:16740662, ECO:0000269|PubMed:17885092, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711}. On Al3+ medium the mutant has significantly shorter roots than the Col wild type. In the absence of aluminum stress the roots of mutant and wild type grew similarly.,The mutant exhibits very low levels of root growth and malate release in the presence of Al (0.2 nmol plant-1 24 h-1). Sensitive to aluminum-L. Kochian-2006 FUNCTION: Malate transporter. {ECO:0000250}.,FUNCTION: Malate transporter critical for aluminum tolerance. The STOP1 transcription factor is required for ALMT1 expression. {ECO:0000269|PubMed:16740662, ECO:0000269|PubMed:17885092, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711}. MISCELLANEOUS: Essential factor for aluminum (Al) tolerance but does not represent the major Al tolerance QTL also found on chromosome 1. Acts in parallel but independently of MATE, an aluminum-activated root citrate transporter.; MISCELLANEOUS: A reversible phosphorylation acting both at the transcriptional and post-transcriptional levels is required to activate malate release in response to aluminum. 55682,54400,55077,56574,53586,54661 Aluminum-activated malate transporter 2 (AtALMT2),Aluminum-activated malate transporter 8 (AtALMT8),Aluminum-activated malate transporter 1 (AtALMT1),Aluminum-activated malate transporter 7 (AtALMT7),Aluminum activated malate transporter family protein integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; malate transmembrane transporter activity [GO:0015140],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; malate transmembrane transporter activity [GO:0015140]; malate transmembrane transport [GO:0071423]; positive regulation of growth of symbiont involved in interaction with host [GO:0044148]; response to aluminum ion [GO:0010044],integral component of membrane [GO:0016021]; malate transport [GO:0015743] TISSUE SPECIFICITY: Expressed in roots, but not in shoots. Detected in the root apex in absence of aluminum stress and in root apices, the stele and endodermis of the elongating zone of primary and lateral roots after aluminum stress. Not expressed in cortical and epidermal cells. {ECO:0000269|PubMed:16740662, ECO:0000269|PubMed:17885092}. locus:2201791;,locus:2098343;,locus:2201781;,locus:2039654; AT1G08440,AT3G11680,AT1G08430,AT2G27240 Aluminum-activated malate transporter OJ991214_12.19 protein (OSJNBa0033G16.6 protein) (Os04g0417000 protein) (cDNA clone:001-115-D04, full insert sequence),Os03g0122300 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, expressed) (cDNA clone:J023093A18, full insert sequence) Q7X7K7,Q10SI0 Q7X7K7_ORYSJ,Q10SI0_ORYSJ OJ991214_12.19 Os04g0417000 OsJ_14765 OSJNBa0033G16.6 OSNPB_040417000,Os03g0122300 LOC_Os03g03034 OSNPB_030122300 ENOG411DTND YUP8H12R.26 O64539 O64539_ARATH Ubiquitin carboxyl-terminal hydrolase family protein (YUP8H12R.26 protein) 47320 Ubiquitin carboxyl-terminal hydrolase family protein (YUP8H12R.26 protein) hydrolase activity [GO:0016787] locus:2207380; AT1G79120 Plant organelle RNA recognition domain Os03g0667400 protein (Fragment),Os03g0668400 protein Q0DPS2,Q0DPR6 Q0DPS2_ORYSJ,Q0DPR6_ORYSJ Os03g0667400 OSNPB_030667400,Os03g0668400 Os03g0668400 OSNPB_030668400 ENOG411DTNE FBL4 Q9C5D2 FBL4_ARATH F-box/LRR-repeat protein 4 (AtFBL4) 66422 F-box/LRR-repeat protein 4 (AtFBL4) locus:505006471; AT4G15475 F-box LRR-repeat protein Os08g0400800 protein,Os10g0148800 protein,Os11g0641200 protein Q0J5U6,A0A0P0XS17,A0A0P0Y4P9 Q0J5U6_ORYSJ,A0A0P0XS17_ORYSJ,A0A0P0Y4P9_ORYSJ Os08g0400800 Os08g0400800 OSNPB_080400800,Os10g0148800 OSNPB_100148800,Os11g0641200 OSNPB_110641200 ENOG411DTNJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp70 protein NA NA NA NA NA NA NA ENOG411DTNK RPS7A,RPS7C,RPS7B Q9C514,Q8LD03,Q9M885 RS71_ARATH,RS73_ARATH,RS72_ARATH 40S ribosomal protein S7-1,40S ribosomal protein S7-3,40S ribosomal protein S7-2 R-ATH-156827;R-ATH-1799339;R-ATH-6791226;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 21922,22061,22196 40S ribosomal protein S7-1,40S ribosomal protein S7-3,40S ribosomal protein S7-2 90S preribosome [GO:0030686]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; small-subunit processome [GO:0032040]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal small subunit biogenesis [GO:0042274]; ribosome assembly [GO:0042255]; rRNA processing [GO:0006364],90S preribosome [GO:0030686]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; small-subunit processome [GO:0032040]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal small subunit biogenesis [GO:0042274]; ribosome assembly [GO:0042255]; rRNA processing [GO:0006364],90S preribosome [GO:0030686]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; small-subunit processome [GO:0032040]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal small subunit biogenesis [GO:0042274]; rRNA processing [GO:0006364] locus:2200839;,locus:2181402;,locus:2076839; AT1G48830,AT5G16130,AT3G02560 40s ribosomal protein NA NA NA NA NA NA NA ENOG411DTNH Q94C90 Q94C90_ARATH NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) (Uncharacterized protein At1g04900) FUNCTION: Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). {ECO:0000256|RuleBase:RU364114}. 50604 NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) (Uncharacterized protein At1g04900) ATP metabolic process [GO:0046034]; NADH dehydrogenase complex assembly [GO:0010257] locus:2010567; AT1G04900 Pfam:DUF185 Protein arginine methyltransferase NDUFAF7 (EC 2.1.1.320) B9EVI4 B9EVI4_ORYSJ Os01g0911900 OsJ_04506 OSNPB_010911900 FUNCTION: Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). {ECO:0000256|RuleBase:RU364114}. ENOG411DTNI SEC6 Q94AI6,F4IA34 SEC6_ARATH,F4IA34_ARATH Exocyst complex component SEC6 (AtSec6),SEC6 DISRUPTION PHENOTYPE: Male gametophytic lethal due to defect in pollen germination and pollen tube growth. {ECO:0000269|PubMed:18492870, ECO:0000269|PubMed:23702595}. FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. {ECO:0000269|PubMed:20870962, ECO:0000269|PubMed:23283982, ECO:0000269|PubMed:23702595}. 85674,88449 Exocyst complex component SEC6 (AtSec6),SEC6 cell wall [GO:0005618]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; SNARE binding [GO:0000149]; exocyst localization [GO:0051601]; exocytosis [GO:0006887],cytosol [GO:0005829]; exocyst [GO:0000145]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; acceptance of pollen [GO:0060321]; exocytosis [GO:0006887] locus:2013046; AT1G71820 exocyst complex component NA NA NA NA NA NA NA ENOG411DTNN FAS4 Q9C813 DEAHD_ARATH ATP-dependent RNA helicase DEAH13 (EC 3.6.4.13) (Protein FASCIATED STEM 4) (AtFAS4) MISCELLANEOUS: Overexpression results in the development of a fasciated stem. {ECO:0000269|PubMed:19295920}. R-ATH-6791226; 3.6.4.13 139145 ATP-dependent RNA helicase DEAH13 (EC 3.6.4.13) (Protein FASCIATED STEM 4) (AtFAS4) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA processing [GO:0006396] locus:2007003; AT1G33390 helicase Os02g0736600 protein (Putative kurz protein) (cDNA clone:J033009M20, full insert sequence) Q6Z742 Q6Z742_ORYSJ Os02g0736600 OSNPB_020736600 P0487D09.24 ENOG411DTNM SQD1 O48917 SQD1_ARATH UDP-sulfoquinovose synthase, chloroplastic (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) Low sulfolipid levels; No other phenotypes detected-C. Benning-1998 FUNCTION: Involved in the biosynthesis of sulfolipids found in thylakoid membranes. Converts UDP-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose. {ECO:0000269|PubMed:11073956}. MetaCyc:MONOMER-1201; 3.13.1.1; 3.13.1.1 53114 UDP-sulfoquinovose synthase, chloroplastic (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) chloroplast [GO:0009507]; coenzyme binding [GO:0050662]; sulfotransferase activity [GO:0008146]; UDPsulfoquinovose synthase activity [GO:0046507]; zinc ion binding [GO:0008270]; cellular response to phosphate starvation [GO:0016036]; glycolipid biosynthetic process [GO:0009247] locus:2123797; AT4G33030 UDP-sulfoquinovose synthase Os05g0387200 protein (Putative UDP-sulfoquinovose synthase) (cDNA clone:J013002O14, full insert sequence),Os05g0387200 protein (Fragment) Q60E66,A0A0P0WLW1 Q60E66_ORYSJ,A0A0P0WLW1_ORYSJ Os05g0387200 Os05g0387200 OSJNBa0073E05.10 OSNPB_050387200,Os05g0387200 OSNPB_050387200 ENOG411ED0F Q9SXB3,A0A1P8AW73,F4I7F8 Y1112_ARATH,A0A1P8AW73_ARATH,F4I7F8_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11280 (EC 2.7.11.1),S-locus lectin protein kinase family protein 2.7.11.1 91337,75099,91219 G-type lectin S-receptor-like serine/threonine-protein kinase At1g11280 (EC 2.7.11.1),S-locus lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672]; recognition of pollen [GO:0048544],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; recognition of pollen [GO:0048544] locus:2202089; AT1G11280 serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DSRU LIP2,LIP1,MYH9.12 F4KFD8,Q9C5J9,A0A1P8BBN5 LIIP2_ARATH,LIIP1_ARATH,A0A1P8BBN5_ARATH Small GTPase-like protein LIP2,Small GTPase LIP1 (Protein LIGHT INSENSITIVE PERIOD 1),Ras-related small GTP-binding family protein DISRUPTION PHENOTYPE: Short-period phenotype even in darkness and short hypocotyls in response to red and blue light but not to far-red light (PubMed:17683937). Altered cell shape and increased ploidy levels at the seedling stage (PubMed:23144185). Hypersensitivity to salt stress (PubMed:23144185). {ECO:0000269|PubMed:17683937, ECO:0000269|PubMed:23144185}. lip1-1 seedlings are early phase mutants showing a shortened period length in DD and LL (red light) conditions using CCR2:LUC+ and CAB2:LUC reporters. The shortened period length of ~1-2 hours is also observed in assays of rhythmic leaf movements. Dark-grown seedlings subject to temperature entraining still show cycling of the CCR2:LUC+ reporter but the period length is shorter in lip1-1 mutants than in C24 control seedlings. lip1-1 mutants do not adjust their photoperiods in response to different fluence rates of constant red or blue light unlike wild type seedlings. They are more sensitive than wild type seedlings to resetting pulses of light during the first portion of subjective night but their responses are similar during most other portions of the circadian cycle. The period of CCA1:LUC+ and LHY:LUC+ (morning oscillator genes) is shorter under low fluence red light in lip1-1 than in the C24 parent line. Wild type seedlings growing in dim light/dark cycles have similar levels of morning oscillator (LHY CCA1) genes as lip1-1 but have higher transcript levels for the TOC1 evening oscillator. Hypocotyl length is reduced in lip1-1 mutant seedlings grown under constant red or blue light at all fluences but matches wild-type hypocotyl length for seedlings grown in constant FR light or darkness. In all comparative experiments both the lip-1 mutant and the C24 line referred to as the wild type or parent line carry the CAB2:LUC reporter.,Light/dark-entrained lip1-2 seedlings released into low fluence red light have a shorter period (by ~1.5-2 hours) for both morning (CCA1 LHY) and evening (TOC1) oscillator genes as determined by northern blots. Short circadian rhythms; Altered response to light-F. Nagy-2007 FUNCTION: Functional small GTPase that acts as a negative factor controlling the light-dependent period shortening of circadian rhythms and light-induced phase resetting during the subjective night (PubMed:17683937). May protect the clock from excessive or mistimed light (PubMed:17683937). Suppresses red and blue light-mediated photomorphogenesis and is required for light-controlled inhibition of endoreplication and tolerance to salt stress (PubMed:23144185). The entrainment of the circadian clock is independent from the other pleiotropic effects (PubMed:23144185). Could be a regulator of seedling establishment (PubMed:23144185). {ECO:0000269|PubMed:17683937, ECO:0000269|PubMed:23144185}. MISCELLANEOUS: Has a GTPase activity despite the replacement of the highly conserved Glu-94 for His. {ECO:0000269|PubMed:17683937}. ARA:AT5G64813-MONOMER; 36893,37741,34795 Small GTPase-like protein LIP2,Small GTPase LIP1 (Protein LIGHT INSENSITIVE PERIOD 1),Ras-related small GTP-binding family protein GTP binding [GO:0005525]; GTPase activity [GO:0003924],cytoplasm [GO:0005737]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; circadian regulation of gene expression [GO:0032922]; photomorphogenesis [GO:0009640] locus:2178148;,locus:505006713; AT5G09910,AT5G64813 gtp-binding protein GTP-binding protein, putative, expressed (Os10g0135200 protein) (cDNA clone:J013136D19, full insert sequence),GTP-binding protein, putative, expressed (Os03g0242200 protein) Q33B74,Q10P96 Q33B74_ORYSJ,Q10P96_ORYSJ LOC_Os10g04580 Os10g0135200 OsJ_30642 OSNPB_100135200,LOC_Os03g13860 Os03g0242200 OSNPB_030242200 ENOG411DSRT Q4TU20,F4JAP8 Q4TU20_ARATH,F4JAP8_ARATH RING finger family protein (RWD domain-containing protein),RWD domain-containing protein 41219,43298 RING finger family protein (RWD domain-containing protein),RWD domain-containing protein nucleus [GO:0005634]; ubiquitin protein ligase activity [GO:0061630] locus:2081967; AT3G60300 Ubiquitin-protein ligase Os11g0565400 protein A0A0P0Y3E6 A0A0P0Y3E6_ORYSJ Os11g0565400 OSNPB_110565400 ENOG411DSRW ASE1,ASE2 Q9SI61,Q9STG9 ASE1_ARATH,ASE2_ARATH Amidophosphoribosyltransferase 1, chloroplastic (AtATase1) (PRPP1) (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase 1) (AtGPRAT1),Amidophosphoribosyltransferase 2, chloroplastic (AtATase2) (AtPURF2) (PRPP2) (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase 2) (AtGPRAT2) (Protein CHLOROPLAST IMPORT APPARATUS 1) (Protein DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS) DISRUPTION PHENOTYPE: Strong growth retardation and severe chlorosis in leaves; white leaves, but green cotyledons. Leaves missing the palisade mesophyll layer, due to reduced cell number and size. Abnormal thylakoid membrane in chloroplasts, probably due to photo-oxidative damage. Defective in protein import into chloroplasts. {ECO:0000269|PubMed:14977588, ECO:0000269|PubMed:15266056}. Resistant to DAS734 (herbicide)-J. Davies-2007 FUNCTION: Catalyzes the first committed step of 'de novo' purine biosynthesis from glutamine. Involved in plastid biogenesis and cell division. {ECO:0000269|PubMed:15266056}.,FUNCTION: Catalyzes the first committed step of 'de novo purine biosynthesis from glutamine. Required for chloroplast biogenesis and cell division. Confers sensitivity to the phenyltriazole acetic acid compound [5-(4-chlorophenyl)-1-isopropyl-1H-[1,2,4]triazol-3-yl]-acetic acid (DAS734), a bleaching herbicide. {ECO:0000269|PubMed:14977588, ECO:0000269|PubMed:15266056, ECO:0000269|PubMed:17616508}. PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2. ARA:AT2G16570-MONOMER;,ARA:AT4G34740-MONOMER; R-ATH-73817; 2.4.2.14; Biosynthesis of secondary metabolites (01110),Purine metabolism (00230),Alanine, aspartate and glutamate metabolism (00250),Metabolic pathways (01100) 2.4.2.14 61842,61030 Amidophosphoribosyltransferase 1, chloroplastic (AtATase1) (PRPP1) (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase 1) (AtGPRAT1),Amidophosphoribosyltransferase 2, chloroplastic (AtATase2) (AtPURF2) (PRPP2) (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase 2) (AtGPRAT2) (Protein CHLOROPLAST IMPORT APPARATUS 1) (Protein DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS) cell wall [GO:0005618]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; plastid [GO:0009536]; plastid stroma [GO:0009532]; amidophosphoribosyltransferase activity [GO:0004044]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; 'de novo' IMP biosynthetic process [GO:0006189]; glutamine metabolic process [GO:0006541]; nucleoside metabolic process [GO:0009116]; purine nucleobase biosynthetic process [GO:0009113],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid stroma [GO:0009532]; amidophosphoribosyltransferase activity [GO:0004044]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; 'de novo' IMP biosynthetic process [GO:0006189]; chloroplast organization [GO:0009658]; glutamine metabolic process [GO:0006541]; nucleoside metabolic process [GO:0009116]; purine nucleobase biosynthetic process [GO:0009113]; purine nucleotide biosynthetic process [GO:0006164] TISSUE SPECIFICITY: Expressed in flowers and roots. Also present in leaves, and, to a lower extent, in cotyledons. {ECO:0000269|PubMed:15266056, ECO:0000269|PubMed:7948903}.,TISSUE SPECIFICITY: Mostly expressed in leaves, and, to a lower extent, in cotyledons. {ECO:0000269|PubMed:14977588, ECO:0000269|PubMed:15266056, ECO:0000269|PubMed:7948903}. locus:2045081;,locus:2139549; AT2G16570,AT4G34740 glutamine phosphoribosylpyrophosphate amidotransferase Amidophosphoribosyltransferase (ATase) (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase),Os01g0873100 protein (Fragment) Q6I5V5,Q0JHB3 Q6I5V5_ORYSJ,Q0JHB3_ORYSJ Os05g0430800 Os05g0430800 OJ1378_A04.3 OSJNBb0048I21.14 OSNPB_050430800,Os01g0873100 Os01g0873100 OSNPB_010873100 ENOG411DSRV Q94AQ7 Q94AQ7_ARATH Tail fiber (Uncharacterized protein At5g11280) 22854 Tail fiber (Uncharacterized protein At5g11280) integral component of membrane [GO:0016021] locus:2148032; AT5G11280 NA Os01g0555300 protein Q8RVF1 Q8RVF1_ORYSJ Os01g0555300 B1110C07.47 OJ1014_G12.1 OsJ_02202 OSNPB_010555300 ENOG411DSRQ SBT1.3,SBT1.5,SBT1.7,SBT1.6 Q9FLI4,Q9LUM3,O65351,O49607 SBT13_ARATH,SBT15_ARATH,SBT17_ARATH,SBT16_ARATH Subtilisin-like protease SBT1.3 (EC 3.4.21.-) (Subtilase subfamily 1 member 3) (AtSBT1.3),Subtilisin-like protease SBT1.5 (EC 3.4.21.-) (Subtilase subfamily 1 member 5) (AtSBT1.5),Subtilisin-like protease SBT1.7 (EC 3.4.21.-) (Cucumisin-like serine protease) (Subtilase subfamily 1 member 7) (AtSBT1.7) (Subtilisin-like serine protease 1) (At-SLP1),Subtilisin-like protease SBT1.6 (EC 3.4.21.-) (Subtilase subfamily 1 member 6) (AtSBT1.6) (Subtilisin-like serine protease 2) (At-SLP2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant seeds are defective in mucilage extrusion. {ECO:0000269|PubMed:18266922}. impaired in mucilage release upon imbibition Abnormal seed mucilage-C. Rautengarten-2008 FUNCTION: Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position (PubMed:12413398). Essential for mucilage release from seed coats. Triggers the accumulation and/or activation of cell wall modifying enzymes necessary either for the loosening of the outer primary cell wall, or to facilitate swelling of the mucilage (PubMed:18266922). {ECO:0000269|PubMed:12413398, ECO:0000269|PubMed:18266922}. ARA:AT5G51750-MONOMER;,ARA:AT5G67360-MONOMER;,ARA:AT4G34980-MONOMER; 3.4.21.- 84950,82584,79415,81046 Subtilisin-like protease SBT1.3 (EC 3.4.21.-) (Subtilase subfamily 1 member 3) (AtSBT1.3),Subtilisin-like protease SBT1.5 (EC 3.4.21.-) (Subtilase subfamily 1 member 5) (AtSBT1.5),Subtilisin-like protease SBT1.7 (EC 3.4.21.-) (Cucumisin-like serine protease) (Subtilase subfamily 1 member 7) (AtSBT1.7) (Subtilisin-like serine protease 1) (At-SLP1),Subtilisin-like protease SBT1.6 (EC 3.4.21.-) (Subtilase subfamily 1 member 6) (AtSBT1.6) (Subtilisin-like serine protease 2) (At-SLP2) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252],apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; serine-type endopeptidase activity [GO:0004252]; mucilage extrusion from seed coat [GO:0080001]; mucilage metabolic process involved in seed coat development [GO:0048359]; seed coat development [GO:0010214],membrane [GO:0016020]; serine-type endopeptidase activity [GO:0004252]; serine-type peptidase activity [GO:0008236]; plant-type cell wall modification [GO:0009827] DEVELOPMENTAL STAGE: Highest levels of expression detected during silique development (PubMed:7647567). Hihghly expressed in the seed coat during seed development (PubMed:18266922). {ECO:0000269|PubMed:18266922, ECO:0000269|PubMed:7647567}. TISSUE SPECIFICITY: Expressed in immature siliques and at lower levels in stems and flowers (PubMed:11055401, PubMed:7647567, PubMed:12413398). Widely expressed at low levels (PubMed:18266922). {ECO:0000269|PubMed:11055401, ECO:0000269|PubMed:12413398, ECO:0000269|PubMed:18266922, ECO:0000269|PubMed:7647567}.,TISSUE SPECIFICITY: Expressed in roots, leaves and flowers of mature plants. {ECO:0000269|PubMed:12702015}. locus:2165366;,locus:2091010;,locus:2158187;,locus:2131566; AT5G51750,AT3G14240,AT5G67360,AT4G34980 subtilisin-like Cucumisin-like serine protease, putative, expressed (Os03g0761500 protein) (Putative serine protease) (cDNA clone:J033055P14, full insert sequence) (cDNA clone:J033123P12, full insert sequence),Os03g0242900 protein (Subtilisin proteinase, putative, expressed) (cDNA, clone: J090088C21, full insert sequence),Cucumisin-like serine protease, putative, expressed (Os03g0605300 protein) (Putaive subtilisin-like proteinase) (Putative serine protease),Os08g0452100 protein,Os04g0573300 protein Q94H95,Q10P89,Q75I27,A0A0P0XGM3,A0A0P0WDQ9 Q94H95_ORYSJ,Q10P89_ORYSJ,Q75I27_ORYSJ,A0A0P0XGM3_ORYSJ,A0A0P0WDQ9_ORYSJ LOC_Os03g55350 Os03g0761500 OsJ_12679 OSJNBb0048A17.11 OSNPB_030761500,LOC_Os03g13930 Os03g0242900 OsJ_10100 OSNPB_030242900,OSJNBa0004G03.20 LOC_Os03g40830 Os03g0605300 OsJ_11683 OSJNBa0091E13.30 OSNPB_030605300,Os08g0452100 OSNPB_080452100,Os04g0573300 OSNPB_040573300 ENOG411DSRP Q9M9C6,O80492 P2C15_ARATH,P2C05_ARATH Probable protein phosphatase 2C 15 (AtPP2C15) (EC 3.1.3.16),Probable protein phosphatase 2C 5 (AtPP2C05) (EC 3.1.3.16) 3.1.3.16 47041,45780 Probable protein phosphatase 2C 15 (AtPP2C15) (EC 3.1.3.16),Probable protein phosphatase 2C 5 (AtPP2C05) (EC 3.1.3.16) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2202339;,locus:2195331; AT1G68410,AT1G09160 phosphatase 2C Probable protein phosphatase 2C 33 (OsPP2C33) (EC 3.1.3.16),Probable protein phosphatase 2C 3 (OsPP2C03) (EC 3.1.3.16),Os07g0690400 protein (Protein phosphatase 2C-like) (cDNA clone:001-024-H09, full insert sequence) (cDNA clone:J013152K12, full insert sequence),Os10g0408700 protein,Os01g0513100 protein (Fragment) Q10MN6,Q0JMD4,Q7F0H8,A0A0P0XTZ8,A0A0P0V397 P2C33_ORYSJ,P2C03_ORYSJ,Q7F0H8_ORYSJ,A0A0P0XTZ8_ORYSJ,A0A0P0V397_ORYSJ Os03g0301700 LOC_Os03g18970 OsJ_10527,Os01g0513100 LOC_Os01g32964 OsJ_001929 OSJNBa0054L14.32 P0504D03.18,P0597G07.122 Os07g0690400 OsJ_25666 OSNPB_070690400,Os10g0408700 OSNPB_100408700,Os01g0513100 OSNPB_010513100 ENOG411DSRS MAK3 O80438 MAK3_ARATH N-alpha-acetyltransferase MAK3 (EC 2.3.1.256) (N-acetyltransferase MAK3 homolog) (AtMAK3) (Protein PHOTOSYNTHESIS ALTERED MUTANT 21) DISRUPTION PHENOTYPE: Reduced plant size and pale-green leaves due to decreased chlorophyll concentration. {ECO:0000269|PubMed:12897255}. FUNCTION: Probably required for N-acetylation of some chloroplast precursor proteins and efficient accumulation of thylakoid multiprotein complexes. In yeast, can replace the NatC complex (composed of MAK3, MAK10 and MAK31) by acetylating N termini of endogenous proteins and the N-terminus Met of L-A virus Gag protein. However, the formation of a NatC complex is not required for this function. {ECO:0000269|PubMed:12897255}. ARA:AT2G38130-MONOMER; 2.3.1.256 22123 N-alpha-acetyltransferase MAK3 (EC 2.3.1.256) (N-acetyltransferase MAK3 homolog) (AtMAK3) (Protein PHOTOSYNTHESIS ALTERED MUTANT 21) cytoplasm [GO:0005737]; NatC complex [GO:0031417]; peptide alpha-N-acetyltransferase activity [GO:0004596]; N-terminal protein amino acid acetylation [GO:0006474] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques. {ECO:0000269|PubMed:12897255}. locus:2042867; AT2G38130 FR47-like protein Acetyltransferase, GNAT family protein, expressed (Os11g0525800 protein),Os11g0525800 protein Q2R3D8,A0A0P0Y2Y3 Q2R3D8_ORYSJ,A0A0P0Y2Y3_ORYSJ LOC_Os11g32280 Os11g0525800 OsJ_34081 OSNPB_110525800,Os11g0525800 OSNPB_110525800 ENOG411DSRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0148500 protein A0A0N7KK55 A0A0N7KK55_ORYSJ Os05g0148500 OSNPB_050148500 ENOG411DSRX PCMP-H37 Q9ZVF4 PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial 66072 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2049562; AT2G01510 repeat-containing protein NA NA NA NA NA NA NA ENOG411DSRE RUG3 Q56Y67,Q9FJG9,A0A1P8BAY4,F4K0I4 Q56Y67_ARATH,Q9FJG9_ARATH,A0A1P8BAY4_ARATH,F4K0I4_ARATH Regulator of chromosome condensation (RCC1) family protein (UVB-resistance protein UVR8-like),Regulator of chromosome condensation (RCC1) family protein (Similarity to regulator of chromosome condensation),Regulator of chromosome condensation (RCC1) family protein 29140,47331,41838,48237 Regulator of chromosome condensation (RCC1) family protein (UVB-resistance protein UVR8-like),Regulator of chromosome condensation (RCC1) family protein (Similarity to regulator of chromosome condensation),Regulator of chromosome condensation (RCC1) family protein mitochondrion [GO:0005739]; mitochondrial respiratory chain complex I assembly [GO:0032981]; RNA splicing [GO:0008380] locus:2159295; AT5G60870 E3 ubiquitin-protein ligase Os04g0226400 protein (Fragment),Os09g0560450 protein C7J118,A0A0P0XQB6,A0A0P0W7L0 C7J118_ORYSJ,A0A0P0XQB6_ORYSJ,A0A0P0W7L0_ORYSJ Os04g0226400 Os04g0226400 OSNPB_040226400,Os09g0560450 OSNPB_090560450,Os04g0226400 OSNPB_040226400 ENOG411DSRD STP3 Q8L7R8,F4K3I6 STP3_ARATH,F4K3I6_ARATH Sugar transport protein 3 (Hexose transporter 3),Major facilitator superfamily protein FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}. 55867,51040 Sugar transport protein 3 (Hexose transporter 3),Major facilitator superfamily protein integral component of membrane [GO:0016021]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323]; hexose transmembrane transport [GO:0035428],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891] locus:2151596; AT5G61520 hexose carrier protein Os06g0141100 protein (Putative hexose transport protein HEX6),Os09g0268300 protein (Putative hexose carrier protein HEX6) Q9SNS2,Q6H4T5,Q6H4T6 Q9SNS2_ORYSJ,Q6H4T5_ORYSJ,Q6H4T6_ORYSJ Os06g0141100 OsJ_20072 OSNPB_060141100 P0535G04.3,B1008E06.22-2 Os09g0268300 OsJ_28607 OSNPB_090268300,B1008E06.22-1 Os09g0268300 OSNPB_090268300 ENOG411DSRG KN Q42374 SY111_ARATH Syntaxin-related protein KNOLLE (Syntaxin-111) (AtSYP111) Embryo and seedling defective-G. Jurgens-1996 FUNCTION: Involved in cytokinesis. Acts as a cell plate-specific syntaxin, required for the fusion of vesicles at the plane of cell division. R-ATH-449836; 35275 Syntaxin-related protein KNOLLE (Syntaxin-111) (AtSYP111) cell plate [GO:0009504]; endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; cell cycle [GO:0007049]; cell division [GO:0051301]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] DEVELOPMENTAL STAGE: It is detected throughout embryogenesis until expression declines in mature embryo. During embryogenesis it is detected in patches of single cells or small cell groups. TISSUE SPECIFICITY: Abundant in flowers and developing siliques. A low level expression is seen in the seedlings, roots, and leaves. locus:2025620; AT1G08560 syntaxin-related protein Knolle protein (Os03g0736500 protein) (Putative cytokinesis-specific syntaxin-related protein) (Syntaxin-related protein KNOLLE, putative, expressed) Q84R43 Q84R43_ORYSJ OSJNBb0016H12.15 Os03g0736500 SYP111 LOC_Os03g52650 OSNPB_030736500 ENOG411DSRF HSR4 Q9FN77,F4IQG2,Q147F9,F4KID5,Q8GW96,Q9FN78,Q9FN75,Q8VZG2 AATPG_ARATH,AATP2_ARATH,AATPC_ARATH,AATPH_ARATH,AATP3_ARATH,AATPF_ARATH,AATPI_ARATH,HSR4_ARATH AAA-ATPase At5g17740 (EC 3.6.1.3),AAA-ATPase At2g18190 (EC 3.6.1.3),AAA-ATPase At3g50940 (EC 3.6.1.3),AAA-ATPase At5g17750 (EC 3.6.1.3),AAA-ATPase At2g18193 (EC 3.6.1.3),AAA-ATPase At5g17730 (EC 3.6.1.3),AAA-ATPase At5g17760 (EC 3.6.1.3),Protein HYPER-SENSITIVITY-RELATED 4 (AtHSR4) (EC 3.6.1.3) (BCS1-like protein) 3.6.1.3 60196,56289,51470,44528,56469,54003,57459,66136 AAA-ATPase At5g17740 (EC 3.6.1.3),AAA-ATPase At2g18190 (EC 3.6.1.3),AAA-ATPase At3g50940 (EC 3.6.1.3),AAA-ATPase At5g17750 (EC 3.6.1.3),AAA-ATPase At2g18193 (EC 3.6.1.3),AAA-ATPase At5g17730 (EC 3.6.1.3),AAA-ATPase At5g17760 (EC 3.6.1.3),Protein HYPER-SENSITIVITY-RELATED 4 (AtHSR4) (EC 3.6.1.3) (BCS1-like protein) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; response to salt stress [GO:0009651],ATP binding [GO:0005524]; ATPase activity [GO:0016887]; response to salt stress [GO:0009651],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],ATP binding [GO:0005524]; ATPase activity [GO:0016887],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887],integral component of membrane [GO:0016021]; mitochondrial envelope [GO:0005740]; mitochondrial outer membrane [GO:0005741]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; identical protein binding [GO:0042802]; cell death [GO:0008219]; plant-type hypersensitive response [GO:0009626]; response to bacterium [GO:0009617]; response to molecule of bacterial origin [GO:0002237]; response to UV [GO:0009411]; salicylic acid mediated signaling pathway [GO:0009863] locus:2175956;,locus:2053109;,locus:2078007;,locus:2175976;,locus:1005716649;,locus:2175946;,locus:2175986;,locus:2077997; AT5G17740,AT2G18190,AT3G50940,AT5G17750,AT2G18193,AT5G17730,AT5G17760,AT3G50930 mitochondrial chaperone BCS1 protein-like (Os01g0605100 protein),Os05g0588850 protein,Os05g0588900 protein (Fragment) Q5ZDA1,A0A0P0WRK9,A0A0P0WR34 Q5ZDA1_ORYSJ,A0A0P0WRK9_ORYSJ,A0A0P0WR34_ORYSJ Os01g0605100 Os01g0605100 OSNPB_010605100 P0681B11.39,Os05g0588850 OSNPB_050588850,Os05g0588900 OSNPB_050588900 ENOG411DSRA EFR,F13I12.140,F1P2.130,MUL8.7 C0LGT6,C0LGP4,Q9SD62,Q9SD64,Q9SN80,F4KEF0 EFR_ARATH,Y3475_ARATH,Y3471_ARATH,Q9SD64_ARATH,Q9SN80_ARATH,F4KEF0_ARATH LRR receptor-like serine/threonine-protein kinase EFR (EC 2.7.11.1) (Elongation factor Tu receptor) (EF-Tu receptor),Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1),Putative receptor-like protein kinase At3g47110 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein (Receptor kinase-like protein),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor kinase) (Receptor-kinase like protein),Leucine-rich repeat protein kinase family protein DISRUPTION PHENOTYPE: Enhanced susceptibility to R.radiobacter. {ECO:0000269|PubMed:16713565}. More susceptible to Agobacterium tumefaciens. Sensitive to elf18 (bacterial defense inducer)-G. Felix-2006 FUNCTION: Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response while interaction with hopD2 decreases the phosphorylation level of EFR upon elf18 treatment. Specific endoplasmic reticulum quality control components (ERD2B, CRT3, UGGT and STT3A) are required for the biogenesis of EFR. {ECO:0000269|PubMed:16713565, ECO:0000269|PubMed:19717464, ECO:0000269|PubMed:19763087, ECO:0000269|PubMed:20410299, ECO:0000269|PubMed:21693696, ECO:0000269|PubMed:24625928}. 2.7.11.1 113353,110901,111538,111133,111254,55412 LRR receptor-like serine/threonine-protein kinase EFR (EC 2.7.11.1) (Elongation factor Tu receptor) (EF-Tu receptor),Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1),Putative receptor-like protein kinase At3g47110 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein (Receptor kinase-like protein),Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Putative receptor kinase) (Receptor-kinase like protein),Leucine-rich repeat protein kinase family protein endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein kinase activity [GO:0019199]; defense response signaling pathway, resistance gene-independent [GO:0010204]; detection of bacterium [GO:0016045]; immune response-regulating signaling pathway [GO:0002764]; plant-type hypersensitive response [GO:0009626]; regulation of anion channel activity [GO:0010359],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2149922;,locus:2079142;,locus:2075661;,locus:2075631;,locus:2079157;,locus:2175703; AT5G20480,AT3G47570,AT3G47110,AT3G47090,AT3G47580,AT5G39390 LRR receptor-like serine threonine-protein kinase Receptor kinase-like protein Xa21 (EC 2.7.11.1) [Cleaved into: Receptor kinase-like protein Xa21, processed],Os08g0247801 protein (Protein kinase Xa21, receptor type-like protein),Os08g0446400 protein (Fragment),Os01g0153000 protein,Os10g0337400 protein,Os11g0569800 protein (Receptor kinase, putative, expressed),Os01g0523100 protein,Os11g0569300 protein,Os01g0152600 protein,Os11g0569500 protein (Receptor kinase, putative, expressed),Os11g0569600 protein (Receptor kinase, putative, expressed) (cDNA clone:J013092C01, full insert sequence),Os02g0215900 protein,Os01g0152800 protein (cDNA clone:J033106J03, full insert sequence),Leucine Rich Repeat family protein (Os11g0559200 protein),Os02g0635600 protein (cDNA clone:J023004O18, full insert sequence),Os08g0247600 protein,Os12g0620000 protein,Os08g0248100 protein (cDNA clone:J013127D07, full insert sequence),Os06g0583600 protein (Fragment),Os02g0215700 protein (Fragment),Os10g0336300 protein,Os12g0498650 protein (Fragment),Os02g0215500 protein (Fragment),Os11g0568800 protein,Os08g0247700 protein,Os01g0152687 protein,Os01g0149700 protein,Os11g0568750 protein Q2R2D5,Q6Z0B5,Q0J5C4,Q0JQL4,B9G830,Q2R2D4,Q5QMC8,C7J886,Q9LGH9,Q2R2D8,Q2R2D7,Q0E2T2,Q5ZD75,Q2R2K5,Q6H845,Q0J6Z0,B9GEB8,Q6Z0A9,A0A0P0WYK8,A0A0P0VGF4,A0A0P0XTM6,A0A0P0YA81,A0A0P0VGF8,A0A0P0Y3G5,A0A0P0XDF8,A0A0N7KCC6,A0A0P0UYJ1,A0A0P0Y3H3 XA21_ORYSJ,Q6Z0B5_ORYSJ,Q0J5C4_ORYSJ,Q0JQL4_ORYSJ,B9G830_ORYSJ,Q2R2D4_ORYSJ,Q5QMC8_ORYSJ,C7J886_ORYSJ,Q9LGH9_ORYSJ,Q2R2D8_ORYSJ,Q2R2D7_ORYSJ,Q0E2T2_ORYSJ,Q5ZD75_ORYSJ,Q2R2K5_ORYSJ,Q6H845_ORYSJ,Q0J6Z0_ORYSJ,B9GEB8_ORYSJ,Q6Z0A9_ORYSJ,A0A0P0WYK8_ORYSJ,A0A0P0VGF4_ORYSJ,A0A0P0XTM6_ORYSJ,A0A0P0YA81_ORYSJ,A0A0P0VGF8_ORYSJ,A0A0P0Y3G5_ORYSJ,A0A0P0XDF8_ORYSJ,A0A0N7KCC6_ORYSJ,A0A0P0UYJ1_ORYSJ,A0A0P0Y3H3_ORYSJ XA21 LOC_Os11g36180 Os11g0569733 OsJ_34314 OSNPB_110569733,Os08g0247801 OsJ_26604 OSJNBa0049G15.26 OSJNBb0003H03.7 OSNPB_080247801,Os08g0446400 Os08g0446400 OSNPB_080446400,Os01g0153000 Os01g0153000 OsJ_00412 OSNPB_010153000,Os10g0337400 OsJ_31119 OSNPB_100337400,Os11g0569800 LOC_Os11g36190 OsJ_34315 OSNPB_110569800,P0516D04.31 Os01g0523100 OSNPB_010523100,Os11g0569300 OSNPB_110569300,Os01g0152600 OSNPB_010152600 P0009G03.33 P0030H07.12,Os11g0569500 LOC_Os11g36150 Os11g0569500 OSNPB_110569500,Os11g0569600 LOC_Os11g36160 Os11g0569600 OsJ_34313 OSNPB_110569600,Os02g0215900 Os02g0215900 OSNPB_020215900,Os01g0152800 Os01g0152800 OSNPB_010152800 P0009G03.36 P0030H07.15,Os11g0559200 LOC_Os11g35500 Os11g0559200 OsJ_34269 OSNPB_110559200,Os02g0635600 Os02g0635600 OJ1626_B09.14 OSNPB_020635600,Os08g0247600 Os08g0247600 OSNPB_080247600,Os12g0620000 OsJ_36900 OSNPB_120620000,Os08g0248100 Os08g0248100 OsJ_26606 OSJNBa0049G15.32 OSJNBb0003H03.13 OSNPB_080248100,Os06g0583600 OSNPB_060583600,Os02g0215700 OSNPB_020215700,Os10g0336300 OSNPB_100336300,Os12g0498650 OSNPB_120498650,Os02g0215500 OSNPB_020215500,Os11g0568800 OSNPB_110568800,Os08g0247700 OSNPB_080247700,Os01g0152687 OSNPB_010152687,Os01g0149700 OSNPB_010149700,Os11g0568750 OSNPB_110568750 FUNCTION: Receptor kinase-like protein Xa21: Receptor kinase that detects X.oryzae pv. oryzae protein Ax21 to promote innate immunity. Following X.oryzae pv. oryzae protein Ax21 detection, undergoes cleavage, releasing the processed protein kinase Xa21 chain. {ECO:0000269|PubMed:22735448}.; FUNCTION: Receptor kinase-like protein Xa21, processed: The processed protein kinase Xa21 chain released by protein cleavage after X.oryzae pv. oryzae protein Ax21 detection translocates into the nucleus where it can bind and regulate WRKY62, a transcription factor. Confers resistance to the bacterial pathogen X.oryzae pv. oryzae (Xoo). {ECO:0000269|PubMed:22735448}. ENOG411DSRC Q8VYA7,A0A1P8AQH1 Q8VYA7_ARATH,A0A1P8AQH1_ARATH Membrane protein (Uncharacterized protein At1g26180),Membrane protein 32151,22722 Membrane protein (Uncharacterized protein At1g26180),Membrane protein integral component of membrane [GO:0016021] locus:2028815; AT1G26180 Predicted membrane protein (DUF2232) Os02g0326000 protein (cDNA clone:006-210-D11, full insert sequence) (cDNA clone:J033115K18, full insert sequence) Q6Z868 Q6Z868_ORYSJ Os02g0326000 OsJ_06502 OSNPB_020326000 P0476C12.24 ENOG411DSRB AAE3 Q9SMT7 4CLLA_ARATH Oxalate--CoA ligase (EC 6.2.1.8) (4-coumarate--CoA ligase isoform 8) (At4CL8) (4-coumarate--CoA ligase-like 10) (Acyl-activating enzyme 3) (Adenosine monophosphate binding protein 3) (AtMPBP3) (Oxalyl-CoA synthetase) DISRUPTION PHENOTYPE: Decreased and delayed seed germination, but no other growth and development phenotypes. Increased sensitivity to oxalate-producing fungal pathogens. {ECO:0000269|PubMed:22447686}. FUNCTION: Oxalyl-CoA synthetase acting exclusively against oxalate. No activity with malonate, succinate, malate, acetate, formate, lactate, glycolate, glyoxylate or glutarate. Required for oxalate degradation, normal seed development and defense against oxalate-producing fungal pathogens. {ECO:0000269|PubMed:22447686}. ARA:AT3G48990-MONOMER; 6.2.1.8; 6.2.1.8 55544 Oxalate--CoA ligase (EC 6.2.1.8) (4-coumarate--CoA ligase isoform 8) (At4CL8) (4-coumarate--CoA ligase-like 10) (Acyl-activating enzyme 3) (Adenosine monophosphate binding protein 3) (AtMPBP3) (Oxalyl-CoA synthetase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; oxalate-CoA ligase activity [GO:0050203]; defense response to fungus [GO:0050832]; oxalate catabolic process [GO:0033611]; positive regulation of seed germination [GO:0010030]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; seed coat development [GO:0010214] locus:2101368; AT3G48990 synthetase OSJNBa0088H09.2 protein (Os04g0683700 protein) Q7XPV4 Q7XPV4_ORYSJ Os04g0683700 Os04g0683700 OSJNBa0088H09.2 OSNPB_040683700 ENOG411DSRM BCAT2,BCAT3,BCAT5,BCAT-2 Q9M439,Q9M401,Q9FYA6,Q2V4P2,B3H658 BCAT2_ARATH,BCAT3_ARATH,BCAT5_ARATH,Q2V4P2_ARATH,B3H658_ARATH Branched-chain-amino-acid aminotransferase 2, chloroplastic (Atbcat-2) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase 3, chloroplastic (Atbcat-3) (EC 2.6.1.42) (EC 2.6.1.88),Branched-chain-amino-acid aminotransferase 5, chloroplastic (Atbcat-5) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) DISRUPTION PHENOTYPE: No effect on the levels of free amino acids in seeds, but reduced levels of Val, Ser and Thr in leaves. Increased levels of Met-derived glucosinolates in leaves. {ECO:0000269|PubMed:18162591}. FUNCTION: Converts 2-oxo acids to branched-chain amino acids. Shows activity with L-Leu, L-Ile and L-Val as amino donors and 2-oxoglutarate as an amino acceptor, but no activity for D-isomers of Leu, Ile, Val, Asp, Glu or Ala. {ECO:0000269|PubMed:18318836}.,FUNCTION: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine. Also involved in methionine chain elongation cycle of aliphatic glucosinolate formation. Catalyzes the conversion of 5-methylthiopentyl-2-oxo and 6-methylthiohexyl-2-oxo acids to their respective Met derivatives, homomethionine and dihomo-methionine, respectively. {ECO:0000269|PubMed:18162591}.,FUNCTION: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine (By similarity). {ECO:0000250}. MISCELLANEOUS: Branched-chain amino acids are synthesized in chloroplasts, whereas the degradation takes place in mitochondria. PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 4/4.; PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 4/4.; PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 4/4. ARA:AT3G49680-MONOMER;MetaCyc:AT3G49680-MONOMER; R-ATH-70895; 2.6.1.42,2.6.1.42; 2.6.1.88 42591,44972,45581,34575,44731 Branched-chain-amino-acid aminotransferase 2, chloroplastic (Atbcat-2) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase 3, chloroplastic (Atbcat-3) (EC 2.6.1.42) (EC 2.6.1.88),Branched-chain-amino-acid aminotransferase 5, chloroplastic (Atbcat-5) (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) chloroplast [GO:0009507]; L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; isoleucine biosynthetic process [GO:0009097]; leucine biosynthetic process [GO:0009098]; plant-type cell wall organization or biogenesis [GO:0071669]; valine biosynthetic process [GO:0009099],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; isoleucine biosynthetic process [GO:0009097]; leucine biosynthetic process [GO:0009098]; valine biosynthetic process [GO:0009099],chloroplast [GO:0009507]; L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; isoleucine biosynthetic process [GO:0009097]; leucine biosynthetic process [GO:0009098]; valine biosynthetic process [GO:0009099],L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; branched-chain amino acid biosynthetic process [GO:0009082] TISSUE SPECIFICITY: Expressed in the phloem cells. {ECO:0000269|PubMed:18162591}. locus:2201921;,locus:2097320; AT1G10070,AT3G49680,AT5G65780 branched-chain-amino-acid aminotransferase Branched-chain-amino-acid aminotransferase (EC 2.6.1.42),Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) (Fragment) Q8GRH8,Q6AT43,Q8H7T7,A0A0P0XXH0 Q8GRH8_ORYSJ,Q6AT43_ORYSJ,Q8H7T7_ORYSJ,A0A0P0XXH0_ORYSJ Os03g0231600 OJ1781E12.10 LOC_Os03g12890 Os03g0231600 OJ1017C11.6 OSNPB_030231600,Os05g0558400 OsJ_19511 OSJNBa0001A14.4 OSNPB_050558400,Os03g0106400 LOC_Os03g01600 Os03g0106400 OSJNBa0009C08.14 OSNPB_030106400,Os10g0549500 OSNPB_100549500 ENOG411DSRN ''cytochrome P450 Q9FRK4 Q9FRK4_ARATH Cytochrome P450, family 721, subfamily A, polypeptide 1 (Cytochrome P450, putative; 64213-66051) (Putative cytochrome P450; 1456-3294) ARA:AT1G75130-MONOMER; 58063 Cytochrome P450, family 721, subfamily A, polypeptide 1 (Cytochrome P450, putative; 64213-66051) (Putative cytochrome P450; 1456-3294) heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2025147; AT1G75130 cytochrome P450 Os05g0405600 protein (Putative cytochrome P450),Os05g0405600 protein,Os05g0405500 protein (Fragment) Q6AVA6,A0A0P0WM73,A0A0P0WM68 Q6AVA6_ORYSJ,A0A0P0WM73_ORYSJ,A0A0P0WM68_ORYSJ Os05g0405600 Os05g0405600 OJ1174_H11.7 OSNPB_050405600,Os05g0405600 OSNPB_050405600,Os05g0405500 OSNPB_050405500 ENOG411DSRI Q6NL06,A0A1P8AMF8,A8MRY1 Q6NL06_ARATH,A0A1P8AMF8_ARATH,A8MRY1_ARATH At1g47570 (RING/U-box superfamily protein),RING/U-box superfamily protein 53103,45257,51758 At1g47570 (RING/U-box superfamily protein),RING/U-box superfamily protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]; mitotic cell cycle checkpoint [GO:0007093]; ubiquitin-dependent protein catabolic process [GO:0006511],metal ion binding [GO:0046872] locus:2015318; AT1G47570 E3 ubiquitin-protein ligase CHFR-like At1g47570 (Os11g0175500 protein) (Zinc finger, C3HC4 type family protein, expressed),Os08g0123300 protein (Fragment),At1g47570 (Os11g0175500 protein) (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J033051D17, full insert sequence) Q53PH4,C7J6D5,Q53PH3 Q53PH4_ORYSJ,C7J6D5_ORYSJ,Q53PH3_ORYSJ Os11g0175500 LOC_Os11g07450 Os11g0175500 OSNPB_110175500,Os08g0123300 Os08g0123300 OSNPB_080123300,Os11g0175500 LOC_Os11g07450 OSNPB_110175500 ENOG411DSRH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os08g0241400 protein A0A0N7KPI3 A0A0N7KPI3_ORYSJ Os08g0241400 OSNPB_080241400 ENOG411DSRK HMA5,RAN1 Q9SH30,Q9S7J8 HMA5_ARATH,HMA7_ARATH Probable copper-transporting ATPase HMA5 (EC 3.6.3.54) (Probable copper-transporting ATPase 3) (Protein HEAVY METAL ATPASE 5),Copper-transporting ATPase RAN1 (EC 3.6.3.54) (Protein HEAVY METAL ATPASE 7) (Protein RESPONSIVE TO ANTAGONIST 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are hypersensitive to copper excess. {ECO:0000269|PubMed:16367966}. Accumulation of Cu in both roots and shoots of mutant when grown on medium containing 10 ;M Cu.,During early stages of development the seedlings are chlorotic and smaller than wild-type.,Increasingly retarded development of seedlings when grown on media containing increasing concentrations of Cu.,Seedlings germination is totally arrested (both aerial parts and roots) when grown on 50 microM Cu.,Seedlings grown on 30 ;M Cu display yellow cotyledons with completely arrested root growth. Sensitive to copper-L. Penarrubia-2006,Sensitive to TCO (inhibitor of ethylene signaling)-J. Ecker-1999 FUNCTION: Involved in copper import into the cell. May play a role in copper detoxification in roots. {ECO:0000269|PubMed:16367966}.,FUNCTION: Involved in copper import into the cell. Essential for ethylene signaling, which requires copper. Acts by delivering copper to create functional hormone receptors. ARA:AT1G63440-MONOMER;ARA:MONOMER-14503;MetaCyc:MONOMER-14503;,ARA:AT5G44790-MONOMER; R-ATH-936837; 3.6.3.4; 3.6.3.54 108336,107395 Probable copper-transporting ATPase HMA5 (EC 3.6.3.54) (Probable copper-transporting ATPase 3) (Protein HEAVY METAL ATPASE 5),Copper-transporting ATPase RAN1 (EC 3.6.3.54) (Protein HEAVY METAL ATPASE 7) (Protein RESPONSIVE TO ANTAGONIST 1) integral component of plasma membrane [GO:0005887]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; copper ion binding [GO:0005507]; copper ion transport [GO:0006825]; detoxification of copper ion [GO:0010273]; response to copper ion [GO:0046688],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; ATP binding [GO:0005524]; cation-transporting ATPase activity [GO:0019829]; copper ion binding [GO:0005507]; copper ion transport [GO:0006825]; ethylene-activated signaling pathway [GO:0009873]; regulation of stomatal movement [GO:0010119]; response to ethylene [GO:0009723] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:16367966}. locus:2031361;,locus:2156354; AT1G63440,AT5G44790 copper-transporting ATPase Copper-transporting ATPase HMA4 (EC 3.6.3.54) (Protein HEAVY METAL ATPASE 4) (OsHMA4),Cation-transporting ATPase HMA5 (EC 3.6.3.-) (Protein HEAVY METAL ATPASE 5) (OsHMA5),Copper-transporting ATPase HMA5 (EC 3.6.3.54) (Protein HEAVY METAL ATPASE 5) (OsHMA5),Os04g0556000 protein (Fragment),Os02g0172600 protein Q6H7M3,A0A0P0X004,A3AWA4,A0A0P0WDD9,A0A0N7KES2 HMA4_ORYSJ,HMA9_ORYSJ,HMA5_ORYSJ,A0A0P0WDD9_ORYSJ,A0A0N7KES2_ORYSJ HMA4 Os02g0196600 LOC_Os02g10290 OJ1225_F07.30 OJ1524_D08.15 OsJ_05752,HMA9 Os06g0665800 LOC_Os06g45500 P0473H04.28,HMA5 Os04g0556000 LOC_Os04g46940 OsJ_15734 OSJNBb0012E24.8,Os04g0556000 OSNPB_040556000,Os02g0172600 OSNPB_020172600 DISRUPTION PHENOTYPE: Reduced plant height and biomass. Reduced fertility. Increased levels of copper in grain, leaf sheath and internodes. {ECO:0000269|PubMed:27387148}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased sensitivity to elevated levels of zinc, copper, lead, and to a lesser extent cadmium. {ECO:0000269|PubMed:17827266}.,DISRUPTION PHENOTYPE: Reduced grain yield. Increased levels of copper in roots. Decreased levels of copper in shoots and grains. {ECO:0000269|PubMed:24064929}. FUNCTION: Copper (Cu) transporter that mediates Cu transport in root vacuoles. Involved in Cu detoxification by sequestrating Cu into root vacuoles and limiting translocation of Cu from the roots to the shoots, and accumulation in grains. {ECO:0000269|PubMed:27387148}.,FUNCTION: Metal efflux transporter that may play a role in detoxification of heavy metals, such as zinc, copper, lead and cadmium, especially in the shoots. {ECO:0000269|PubMed:17827266}.,FUNCTION: Copper (Cu) transporter that plays an essential role in promoting translocation of Cu from roots to shoots. Involved in loading Cu to the xylem of the roots and other organs, including panicles. {ECO:0000269|PubMed:24064929}. ENOG411DSRJ VAMP712,VAMP711,VAMP713 Q9SIQ9,O49377,Q9LFP1,A0A1P8BEB3 VA712_ARATH,VA711_ARATH,VA713_ARATH,A0A1P8BEB3_ARATH Vesicle-associated membrane protein 712 (AtVAMP712),Vesicle-associated membrane protein 711 (AtVAMP711) (v-SNARE synaptobrevin 7C) (AtVAMP7C),Vesicle-associated membrane protein 713 (AtVAMP713),Vesicle-associated membrane protein 713 The mutant plants are indistinguishable from the wild-type plants when grown in 1/2 strength Murashige and Skoog (MS) medium. However when exposed to salt stress they exhibit increased salt tolerance. Resistant to salt-A. Levine-2006 FUNCTION: Involved in the targeting and/or fusion of transport vesicles to their target membrane. {ECO:0000305|PubMed:11115874}. R-ATH-8856825; 24966,25039,25320,25896 Vesicle-associated membrane protein 712 (AtVAMP712),Vesicle-associated membrane protein 711 (AtVAMP711) (v-SNARE synaptobrevin 7C) (AtVAMP7C),Vesicle-associated membrane protein 713 (AtVAMP713),Vesicle-associated membrane protein 713 integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; vacuolar membrane [GO:0005774]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; membrane fusion [GO:0061025]; protein transport [GO:0015031]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; stomatal movement [GO:0010118]; vesicle fusion [GO:0006906],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; SNARE complex [GO:0031201]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; exocytosis [GO:0006887]; protein transport [GO:0015031]; response to salt stress [GO:0009651]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in flowers, leaves, stems and roots. {ECO:0000269|PubMed:15342965}.,TISSUE SPECIFICITY: Highly expressed in stems and roots. Detected in flowers and leaves. {ECO:0000269|PubMed:15342965}. locus:2059591;,locus:2116672;,locus:2147952; AT2G25340,AT4G32150,AT5G11150 vesicle-associated membrane protein Os02g0803600 protein (Putative synaptobrevin 1) (cDNA clone:002-120-F06, full insert sequence),Os06g0174400 protein (Putative synaptobrevin 1) (cDNA clone:J013002O15, full insert sequence) Q69SJ1,Q9LWK1 Q69SJ1_ORYSJ,Q9LWK1_ORYSJ Os02g0803600 Os02g0803600 OsJ_08762 OSNPB_020803600 P0689B12.29,Os06g0174400 OsJ_20311 OSNPB_060174400 P0015E04.6 ENOG411DSR5 Q8RY73,B3H672,F4JP92,F4JP90 DXO_ARATH,PP317_ARATH,F4JP92_ARATH,F4JP90_ARATH Decapping nuclease DXO homolog, chloroplastic (EC 3.6.1.-),Pentatricopeptide repeat-containing protein At4g17616,Glycine-rich protein FUNCTION: Ribonuclease that specifically degrades pre-mRNAs with a defective 5' end cap and is part of a pre-mRNA capping quality control. {ECO:0000250}. 3.6.1.- 60381,76498,59619,60523 Decapping nuclease DXO homolog, chloroplastic (EC 3.6.1.-),Pentatricopeptide repeat-containing protein At4g17616,Glycine-rich protein chloroplast [GO:0009507]; cytosol [GO:0005829]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; nucleotide binding [GO:0000166]; RNA binding [GO:0003723],intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],DNA binding [GO:0003677]; nuclease activity [GO:0004518] locus:2129311;,locus:4515103412; AT4G17620,AT4G17616 Pentatricopeptide repeat-containing protein Os07g0495300 protein A0A0P0X5X6 A0A0P0X5X6_ORYSJ Os07g0495300 OSNPB_070495300 ENOG411DSR4 CDC20-2,CDC20-4,CDC20-5,CDC20-6,CDC20-1,CDC20-3 Q9S7I8,Q4PSE4,Q3E906,F4K5R6,Q9SZA4,Q9S7H3 CDC22_ARATH,CDC24_ARATH,CD205_ARATH,CDC26_ARATH,CDC21_ARATH,CD203_ARATH Cell division cycle 20.2, cofactor of APC complex (AtCDC20.2),Cell division cycle 20.4, cofactor of APC complex (AtCDC20.4),Cell division cycle 20.5, cofactor of APC complex (AtCDC20.5),Cell division cycle 20.6, cofactor of APC complex (AtCDC20.6),Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1),Cell division cycle 20.3, cofactor of APC complex (AtCDC20.3) DISRUPTION PHENOTYPE: Delay in plant development due to reduced cell number and male sterility. {ECO:0000269|PubMed:21687678}. FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. {ECO:0000250, ECO:0000269|PubMed:21687678}.,FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-141405;R-ATH-141430;R-ATH-174184; 49504,49231,49968,47694,50551,49152 Cell division cycle 20.2, cofactor of APC complex (AtCDC20.2),Cell division cycle 20.4, cofactor of APC complex (AtCDC20.4),Cell division cycle 20.5, cofactor of APC complex (AtCDC20.5),Cell division cycle 20.6, cofactor of APC complex (AtCDC20.6),Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1),Cell division cycle 20.3, cofactor of APC complex (AtCDC20.3) mitotic checkpoint complex [GO:0033597]; nucleus [GO:0005634]; anaphase-promoting complex binding [GO:0010997]; kinase binding [GO:0019900]; ubiquitin-protein transferase activator activity [GO:0097027]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein ubiquitination [GO:0016567],cytoplasm [GO:0005737]; anaphase-promoting complex binding [GO:0010997]; ubiquitin-protein transferase activator activity [GO:0097027]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein ubiquitination [GO:0016567],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; anaphase-promoting complex binding [GO:0010997]; kinase binding [GO:0019900]; ubiquitin-protein transferase activator activity [GO:0097027]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein ubiquitination [GO:0016567],nucleus [GO:0005634]; anaphase-promoting complex binding [GO:0010997]; ubiquitin-protein transferase activator activity [GO:0097027]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of ubiquitin protein ligase activity [GO:1904668]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in meristems and organ primordia. Present in flowers, leaves, stems and roots. {ECO:0000269|PubMed:21687678}.,TISSUE SPECIFICITY: Expressed in meristems and organ primordia. Present in flowers, leaves, stems, roots, pollen grains and developing seeds. {ECO:0000269|PubMed:21687678}. locus:2119141;,locus:2148518;,locus:2143636;,locus:505006640;,locus:2119151;,locus:2144372; AT4G33260,AT5G26900,AT5G27570,AT5G27945,AT4G33270,AT5G27080 Anaphase-promoting complex subunit Os02g0700100 protein (Putative WD-40 repeat protein) (cDNA clone:J033115E13, full insert sequence),Os04g0599800 protein (cDNA clone:J033136B14, full insert sequence) Q6Z8D3,Q0JAG9 Q6Z8D3_ORYSJ,Q0JAG9_ORYSJ Os02g0700100 Os02g0700100 OJ1111_E07.6 OSNPB_020700100 P0459B01.35,Os04g0599800 Os04g0599800 OSNPB_040599800 ENOG411DSR7 APY7 F4JSH1 APY7_ARATH Probable apyrase 7 (AtAPY7) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 7) DISRUPTION PHENOTYPE: No visible phenotype. Apy6 and dapy7 double mutant exhibits late anther dehiscence and low male fertility. Pollen grains of double mutant are largely deformed in shape and in most cases, the cell walls of the pollen grains are interconnected. {ECO:0000269|Ref.1}. FUNCTION: Catalyzes the hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates (By similarity). Involved in the regulation of pollen and anther development. {ECO:0000250, ECO:0000269|Ref.1}. R-ATH-8850843; 3.6.1.5 81683 Probable apyrase 7 (AtAPY7) (EC 3.6.1.5) (ATP-diphosphatase) (ATP-diphosphohydrolase) (Adenosine diphosphatase) (ADPase) (NTPDase) (Nucleoside triphosphate diphosphohydrolase 7) integral component of membrane [GO:0016021]; 8-oxo-dGTP phosphohydrolase activity [GO:0102490]; ATP binding [GO:0005524]; anther dehiscence [GO:0009901]; pollen exine formation [GO:0010584] TISSUE SPECIFICITY: Detected in mature pollen grains. Also expressed in more diverse tissues such as roots, leaves, stems, pistils and sepals. More particularly expressed in the vascular bundle. {ECO:0000269|Ref.1}. locus:2134731; AT4G19180 Ectonucleoside triphosphate diphosphohydrolase Os10g0350500 protein (Fragment) A0A0P0XT28 A0A0P0XT28_ORYSJ Os10g0350500 OSNPB_100350500 ENOG411DSR1 PNSB1 Q9S9N6 PNSB1_ARATH Photosynthetic NDH subunit of subcomplex B 1, chloroplastic (Protein PnsB1) (NAD(P)H DEHYDROGENASE SUBUNIT 48) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:18785996, ECO:0000269|PubMed:18974055}. Decreased post-illumination chlorophyll fluorescence; No other phenotypes mentioned-E. Aro-2009 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 51022 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic (Protein PnsB1) (NAD(P)H DEHYDROGENASE SUBUNIT 48) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; photosynthetic electron transport in photosystem I [GO:0009773]; transport [GO:0006810] locus:2200452; AT1G15980 Inherit from COG: heptosyltransferase Os08g0276100 protein (cDNA clone:001-027-H10, full insert sequence) Q6ZG03 Q6ZG03_ORYSJ Os08g0276100 Os08g0276100 OJ1118_F05.12 OSNPB_080276100 ENOG411DSR0 F4IX29 F4IX29_ARATH Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 23685 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein hydrolase activity [GO:0016787]; metabolic process [GO:0008152] AT3G62040 Haloacid dehalogenase-like hydrolase family protein Expressed protein (Os03g0834050 protein),Os07g0634400 protein (Ripening-related protein-like) (cDNA, clone: J100044F19, full insert sequence) Q75LI3,Q8LHP3 Q75LI3_ORYSJ,Q8LHP3_ORYSJ Os03g0834050 OsJ_13257 OSJNBa0096I06.24 OSNPB_030834050,P0455H11.115 Os07g0634400 OsJ_25264 OSNPB_070634400 ENOG411DSR3 Q5E916,A0A1P8AXJ7 Q5E916_ARATH,A0A1P8AXJ7_ARATH ATP-dependent protease La (LON) domain protein (At2g25740),ATP-dependent protease La (LON) domain protein 62051,54488 ATP-dependent protease La (LON) domain protein (At2g25740),ATP-dependent protease La (LON) domain protein metal ion binding [GO:0046872]; peptidase activity [GO:0008233] locus:2043500; AT2G25740 ATP-dependent protease La Os05g0521500 protein,ATP-dependent protease La (LON) domain-containing protein-like (Os01g0743600 protein) (cDNA clone:J033090F18, full insert sequence) (cDNA clone:J033146A06, full insert sequence) Q53WM9,Q5JKW4 Q53WM9_ORYSJ,Q5JKW4_ORYSJ Os05g0521500 Os05g0521500 OJ1087_C03.3 OSNPB_050521500,Os01g0743600 Os01g0743600 OsJ_03417 OSJNBa0014K08.2 OSNPB_010743600 P0439E07.35 ENOG411DSR2 A0A1P8B891,F4JIA7 A0A1P8B891_ARATH,F4JIA7_ARATH Electron carrier/ protein disulfide oxidoreductase 79125,72882 Electron carrier/ protein disulfide oxidoreductase intracellular [GO:0005622]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454]; intracellular signal transduction [GO:0035556],cell [GO:0005623]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2133524; AT4G08550 Domain found in Dishevelled Egl-10 and Pleckstrin (DEP) Glutaredoxin-related-like protein (Os06g0224200 protein) (cDNA clone:J013122H21, full insert sequence) Q67UI1 Q67UI1_ORYSJ Os06g0224200 Os06g0224200 OSNPB_060224200 P0638H11.29 ENOG411DSR9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX F-box domain containing protein, expressed (Os10g0139300 protein) (cDNA clone:002-127-B12, full insert sequence),Os10g0139100 protein Q33B55,Q8VWG2 Q33B55_ORYSJ,Q8VWG2_ORYSJ LOC_Os10g04980 Os10g0139300 OSNPB_100139300,OSJNAa0087H07.13 Os10g0139100 LOC_Os10g04950 OsJ_30673 OSJNBa0029P06.7 OSNPB_100139100 ENOG411DSR8 ChlADR2,MRG7.17 Q9SQR4,Q9SQR2,Q9SVQ9,Q9FK50,A0A1P8BDP1 ADRC3_ARATH,ADRC2_ARATH,Q9SVQ9_ARATH,Q9FK50_ARATH,A0A1P8BDP1_ARATH NADPH-dependent aldehyde reductase-like protein, chloroplastic (EC 1.1.1.-),NADPH-dependent aldehyde reductase 2, chloroplastic (AtChlADR2) (EC 1.1.1.-) (Short-chain type dehydrogenase/reductase),AT4g13180/F17N18_70 (NAD(P)-binding Rossmann-fold superfamily protein) (Short-chain alcohol dehydrogenase like protein),Brn1-like protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein FUNCTION: Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons. {ECO:0000250|UniProtKB:Q9SQR2}.,FUNCTION: Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons (PubMed:21169366). No activity on alpha,beta-unsaturated ketones (PubMed:21169366). Can use propionaldehyde, butyraldehyde, methylglyoxal, (e)-2-pentenal, (E)-2-hexenal, (Z)-3-hexenal and (E)-2-nonenal as substrates, but not propenal (acrolein), crotonaldehyde, 2-butanone, 3-buten-2-one or 1-penten-3-one (PubMed:21169366). {ECO:0000269|PubMed:21169366}. ARA:AT3G03980-MONOMER;,ARA:AT3G04000-MONOMER;MetaCyc:AT3G04000-MONOMER;,ARA:AT4G13180-MONOMER;,ARA:AT5G18210-MONOMER; Biotin metabolism (00780),Biosynthesis of unsaturated fatty acids (01040),Fatty acid biosynthesis (00061),Metabolic pathways (01100) 1.1.1.- 28146,28435,27657,27265,29207 NADPH-dependent aldehyde reductase-like protein, chloroplastic (EC 1.1.1.-),NADPH-dependent aldehyde reductase 2, chloroplastic (AtChlADR2) (EC 1.1.1.-) (Short-chain type dehydrogenase/reductase),AT4g13180/F17N18_70 (NAD(P)-binding Rossmann-fold superfamily protein) (Short-chain alcohol dehydrogenase like protein),Brn1-like protein (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; oxidoreductase activity [GO:0016491],chloroplast [GO:0009507]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; oxidation-reduction process [GO:0055114],response to arsenic-containing substance [GO:0046685],oxidoreductase activity [GO:0016491] locus:2095968;,locus:2095918;,locus:2119345;,locus:2172369; AT3G03980,AT3G04000,AT4G13180,AT5G18210 Short-chain type dehydrogenase Os07g0561500 protein (Putative short-chain dehydrogenase/reductase),Os06g0185100 protein (Putative short-chain alcohol dehydrogenase),Os07g0170000 protein Q6ZF50,Q5SMM7,A0A0N7KN00 Q6ZF50_ORYSJ,Q5SMM7_ORYSJ,A0A0N7KN00_ORYSJ Os07g0561500 OSNPB_070561500 P0406F06.12 P0567H04.46,Os06g0185100 OSNPB_060185100 P0554A06.25,Os07g0170000 OSNPB_070170000 ENOG411EK91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411EH91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Family with sequence similarity 82 member B NA NA NA NA NA NA NA ENOG411EMFP Q9STW4 Q9STW4_ARATH Peptidase C50, separase (Uncharacterized protein AT4g24300) (Uncharacterized protein T22A6.130) 16613 Peptidase C50, separase (Uncharacterized protein AT4g24300) (Uncharacterized protein T22A6.130) locus:2135927; AT4G24300 NA NA NA NA NA NA NA NA ENOG411EMFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX5B IYO Q8GYU3 IYO_ARATH Transcriptional elongation regulator MINIYO DISRUPTION PHENOTYPE: No visible phenotype when heterozygous. Embryo lethal when homozygous. {ECO:0000269|PubMed:21620701}. FUNCTION: Positive regulator of transcriptional elongation that is essential for cells to initiate differentiation. Interacts with RNA polymerase II and the Elongator complex and is required to sustain global levels of transcriptional elongation activity, specifically in differentiating tissues. {ECO:0000269|PubMed:21620701}. MISCELLANEOUS: Over-expression of IYO activates premature cell differentiation and confers resistance to the elongation inhibitor 6-azauracil. {ECO:0000269|PubMed:21620701}. 162425 Transcriptional elongation regulator MINIYO cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell differentiation [GO:0030154]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Expressed in root and shoot apices and in leaf and flower primordia. Detected in the endosperm, embryo, meristems and in organ primordia, but not in mature cells. Found exclusively in the vascular bundles in mature leaves. {ECO:0000269|PubMed:21620701}. locus:2121758; AT4G38440 RPAP1-like C-terminal Os06g0574450 protein,Os06g0574400 protein (Fragment),Os06g0574332 protein (Fragment) A0A0P0WY77,A0A0P0WY60,A0A0P0WYK2 A0A0P0WY77_ORYSJ,A0A0P0WY60_ORYSJ,A0A0P0WYK2_ORYSJ Os06g0574450 OSNPB_060574450,Os06g0574400 OSNPB_060574400,Os06g0574332 OSNPB_060574332 ENOG411DX5F CHR10,ASG3 F4IV45,A0A1P8AXX5,F4IV46 CHR10_ARATH,A0A1P8AXX5_ARATH,F4IV46_ARATH Probable helicase CHR10 (EC 3.6.4.-) (Protein ALTERED SEED GERMINATION 3) (Protein CHROMATIN REMODELING 10),SNF2 domain-containing protein / helicase domain-containing protein FUNCTION: Probable helicase-like transcription factor. {ECO:0000250|UniProtKB:Q9LHE4}. R-ATH-5696395;R-ATH-5696400; 3.6.4.- 98867,98683,95879 Probable helicase CHR10 (EC 3.6.4.-) (Protein ALTERED SEED GERMINATION 3) (Protein CHROMATIN REMODELING 10),SNF2 domain-containing protein / helicase domain-containing protein nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; covalent chromatin modification [GO:0016569]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524]; helicase activity [GO:0004386] locus:2054955; AT2G44980 chromodomain-helicase-DNA-binding protein 1-like NA NA NA NA NA NA NA ENOG411DX5E Q9LW07,A0A1I9LT19,A8MRN3,A0A1I9LT18 PGLR3_ARATH,A0A1I9LT19_ARATH,A8MRN3_ARATH,A0A1I9LT18_ARATH Probable polygalacturonase At3g15720 (PG) (EC 3.2.1.15) (Pectinase At3g15720),Pectin lyase-like superfamily protein ARA:AT3G15720-MONOMER; 3.2.1.15 49300,49172,48859,42420 Probable polygalacturonase At3g15720 (PG) (EC 3.2.1.15) (Pectinase At3g15720),Pectin lyase-like superfamily protein anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2093212; AT3G15720 polygalacturonase NA NA NA NA NA NA NA ENOG411DX5Q TIC62 Q8H0U5 TIC62_ARATH Protein TIC 62, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 62) (AtTIC62) DISRUPTION PHENOTYPE: No visible phenotype, but loss of membrane-bound LFNR1 or LFNR2. {ECO:0000269|PubMed:20040542}. FUNCTION: Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62 (PubMed:12426385). Acts as a membrane anchor of LFNR1 and LFNR2. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids (By similarity). {ECO:0000250, ECO:0000269|PubMed:12426385}. 68342 Protein TIC 62, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 62) (AtTIC62) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; protein transport [GO:0015031] DEVELOPMENTAL STAGE: Expressed from day 3 of seedling development and continues throughout the development of photosynthetic tissues. {ECO:0000269|PubMed:20040542}. TISSUE SPECIFICITY: Expressed in cotyledons and leaves, but not in roots. {ECO:0000269|PubMed:15033972, ECO:0000269|PubMed:20040542}. locus:2087901; AT3G18890 NmrA-like family Protein TIC 62, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 62) (OsTIC62) Q10A77 TIC62_ORYSJ TIC62 LOC_Os10g01044 Os10g0100300 OSNPB_100100300 FUNCTION: Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Acts as a membrane anchor of LFNR1 and LFNR2. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids. {ECO:0000250|UniProtKB:Q8H0U5}. ENOG411DX5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0191900 protein (Putative typical P-type R2R3 Myb protein) Q9LG70 Q9LG70_ORYSJ Os01g0191900 OsJ_00708 OSNPB_010191900 P0671B11.5 P0710E05.40 ENOG411DX5X Q8GWD0,A0A1R7T3A0 Q8GWD0_ARATH,A0A1R7T3A0_ARATH Protein kinase superfamily protein (Uncharacterized protein At5g16810) (Uncharacterized protein At5g16810/F5E19_150),Protein kinase superfamily protein 46505,45546 Protein kinase superfamily protein (Uncharacterized protein At5g16810) (Uncharacterized protein At5g16810/F5E19_150),Protein kinase superfamily protein chloroplast [GO:0009507]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2149040; AT5G16810 STYKc Os02g0694800 protein (Fragment) A0A0P0VN99 A0A0P0VN99_ORYSJ Os02g0694800 OSNPB_020694800 ENOG411EBS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0204600 protein,Os06g0204500 protein A0A0P0WU58,A0A0P0WU93 A0A0P0WU58_ORYSJ,A0A0P0WU93_ORYSJ Os06g0204600 OSNPB_060204600,Os06g0204500 OSNPB_060204500 ENOG411EBS1 F19K23.4,MRO11.3 Q8GWB0,O80703,Q8GY68,O04576,Q9FF87,Q9SXE8,Q9C7L0,O80701,F4I534 Q8GWB0_ARATH,O80703_ARATH,Q8GY68_ARATH,O04576_ARATH,Q9FF87_ARATH,Q9SXE8_ARATH,Q9C7L0_ARATH,O80701_ARATH,F4I534_ARATH Mitochondrial transcription termination factor family protein (Uncharacterized protein At1g62150) (Uncharacterized protein At1g62150/F19K23_26),At1g61980 (F8K4.17 protein) (Mitochondrial transcription termination factor family protein),At1g62110 (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At1g62110/F19K23_28),F19K23.4 protein (Mitochondrial transcription termination factor family protein),Mitochondrial transcription termination factor family protein,Mitochondrial transcription termination factor family protein (T3P18.5),Mitochondrial transcription termination factor family protein (Uncharacterized protein F14G9.1),At1g61960 (F8K4.15 protein) (Mitochondrial transcription termination factor family protein) 52066,47237,52243,51565,51886,37855,44563,51478,45839 Mitochondrial transcription termination factor family protein (Uncharacterized protein At1g62150) (Uncharacterized protein At1g62150/F19K23_26),At1g61980 (F8K4.17 protein) (Mitochondrial transcription termination factor family protein),At1g62110 (Mitochondrial transcription termination factor family protein) (Uncharacterized protein At1g62110/F19K23_28),F19K23.4 protein (Mitochondrial transcription termination factor family protein),Mitochondrial transcription termination factor family protein,Mitochondrial transcription termination factor family protein (T3P18.5),Mitochondrial transcription termination factor family protein (Uncharacterized protein F14G9.1),At1g61960 (F8K4.15 protein) (Mitochondrial transcription termination factor family protein) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; response to cold [GO:0009409]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380],double-stranded DNA binding [GO:0003690]; regulation of transcription, DNA-templated [GO:0006355] locus:2018062;,locus:2036868;,locus:2018042;,locus:1006230704;,locus:2172798;,locus:2203931;,locus:2036843;,locus:2010698; AT1G62150,AT1G61980,AT1G62110,AT1G62085,AT5G23930,AT1G62490,AT1G56380,AT1G61960 mitochondrial transcription termination factor family protein NA NA NA NA NA NA NA ENOG411EBS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pleiotropic drug resistance protein ABC transporter G family member 32 (OsABCG32) (Pleiotropic drug resistance protein 16) (OsPDR16),ABC transporter G family member 37 (OsABCG37) (Pleiotropic drug resistance protein 8) (OsPDR8),Os01g0609900 protein (Fragment),Os01g0609900 protein,Os01g0342750 protein (Fragment) Q8LQX2,Q8GU89,A0A0N7KDA9,A0A0P0V544,A0A0P0V2F0 AB32G_ORYSJ,AB37G_ORYSJ,A0A0N7KDA9_ORYSJ,A0A0P0V544_ORYSJ,A0A0P0V2F0_ORYSJ ABCG32 PDR16 PDR5 Os01g0342700 LOC_Os01g24010 B1045F02.15,ABCG37 PDR4 PDR8 Os01g0609900 LOC_Os01g42410 P0410E03.10,Os01g0609900 OSNPB_010609900,Os01g0342750 OSNPB_010342750 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411EBS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0141700 protein A0A0P0X241 A0A0P0X241_ORYSJ Os07g0141700 OSNPB_070141700 ENOG411EJ96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EJ97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ94 MQD22.13,MQD22.12 Q9FJR2,Q9FJR3,F4HWZ4 Q9FJR2_ARATH,Q9FJR3_ARATH,F4HWZ4_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 21625,21440,22317 Plant invertase/pectin methylesterase inhibitor superfamily protein enzyme inhibitor activity [GO:0004857] locus:2170987;,locus:2170977;,locus:2199506; AT5G46990,AT5G46980,AT1G54620 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EJ95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJ92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ90 HIPP47 F4JDJ0,A0A1I9LLM5,A0A1I9LLM4,A0A1I9LLM6 HIP47_ARATH,A0A1I9LLM5_ARATH,A0A1I9LLM4_ARATH,A0A1I9LLM6_ARATH Heavy metal-associated isoprenylated plant protein 47 (AtHIP47),Copper transport protein family FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 12888,15642,13404,13147 Heavy metal-associated isoprenylated plant protein 47 (AtHIP47),Copper transport protein family cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2087580; AT3G20180 NA NA NA NA NA NA NA NA ENOG411EJ91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Proteasome non-ATPase 26S subunit NA NA NA NA NA NA NA ENOG411EJ98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os02g0497300 protein,Os04g0245700 protein,Os02g0320700 protein,Os07g0506900 protein,Os07g0506950 protein,Os05g0381200 protein,Os12g0185800 protein,Os06g0245200 protein B9F042,A0A0P0W8D5,A0A0P0VI92,A0A0P0X678,A0A0P0X6T3,A0A0P0WLS8,A0A0N7KTP3,A0A0P0WUM2 B9F042_ORYSJ,A0A0P0W8D5_ORYSJ,A0A0P0VI92_ORYSJ,A0A0P0X678_ORYSJ,A0A0P0X6T3_ORYSJ,A0A0P0WLS8_ORYSJ,A0A0N7KTP3_ORYSJ,A0A0P0WUM2_ORYSJ Os02g0497300 OsJ_06816 OSNPB_020497300,Os04g0245700 OSNPB_040245700,Os02g0320700 OSNPB_020320700,Os07g0506900 OSNPB_070506900,Os07g0506950 OSNPB_070506950,Os05g0381200 OSNPB_050381200,Os12g0185800 OSNPB_120185800,Os06g0245200 OSNPB_060245200 ENOG411EJ99 Q9SHT9 Q9SHT9_ARATH Uncharacterized protein At2g05350 51515 Uncharacterized protein At2g05350 locus:2042818; AT2G05350 Plant mobile domain NA NA NA NA NA NA NA ENOG411EJ9F PROS Q9STV7 Q9STV7_ARATH Uncharacterized protein AT4g24370 (Uncharacterized protein T22A6.200) 18405 Uncharacterized protein AT4g24370 (Uncharacterized protein T22A6.200) locus:2135902; AT4G24370 NA NA NA NA NA NA NA NA ENOG411EJ9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase NA NA NA NA NA NA NA ENOG411EJ9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EJ9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein Os08g0315200 protein Q0J6I4 Q0J6I4_ORYSJ Os08g0315200 Os08g0315200 OSNPB_080315200 ENOG411EJ9A Q29Q07 Q29Q07_ARATH At4g16447 14583 At4g16447 locus:505006481; AT4G16447 at4g16447 (e NA NA NA NA NA NA NA ENOG411EJ9N Q9ZW05 Q9ZW05_ARATH Transmembrane protein (Uncharacterized protein At2g29180) 18600 Transmembrane protein (Uncharacterized protein At2g29180) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2043192; AT2G29180 NA NA NA NA NA NA NA NA ENOG411EJ9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ9J A8MQH6,Q6NM15,B3H5U9 A8MQH6_ARATH,Q6NM15_ARATH,B3H5U9_ARATH AT1G30475 protein,At1g30475,Uncharacterized protein 20411,17227,14694 AT1G30475 protein,At1g30475,Uncharacterized protein locus:1006230728; AT1G30475 NA NA NA NA NA NA NA NA ENOG411EJ9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ9H ATSOFL2 Q9CA45 Q9CA45_ARATH At1g68870 (SOB five-like 2) (Uncharacterized protein F14K14.2) 16389 At1g68870 (SOB five-like 2) (Uncharacterized protein F14K14.2) cytokinin metabolic process [GO:0009690] locus:2012418; AT1G68870 NA NA NA NA NA NA NA NA ENOG411EJ9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase NA NA NA NA NA NA NA ENOG411EJ9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ9U Q8RXW8 Q8RXW8_ARATH Uncharacterized protein At5g65207 8383 Uncharacterized protein At5g65207 locus:504954877; AT5G65207 at5g65207 (e NA NA NA NA NA NA NA ENOG411EJ9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Essential protein Yae1 N terminal NA NA NA NA NA NA NA ENOG411EJ9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0429500 protein A0A0P0XUD2 A0A0P0XUD2_ORYSJ Os10g0429500 OSNPB_100429500 ENOG411EJ9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox domain NA NA NA NA NA NA NA ENOG411EJ9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative gypsy type transposon NA NA NA NA NA NA NA ENOG411E14U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os02g0202800 protein,Os02g0202800 protein (cDNA clone:002-156-G04, full insert sequence) Q0E2Z0,Q6ZHU2 Q0E2Z0_ORYSJ,Q6ZHU2_ORYSJ Os02g0202800 Os02g0202800 OsJ_05805 OSNPB_020202800,OJ1135_F06.10-2 Os02g0202800 OSNPB_020202800 ENOG411EJ9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Skp1 family dimerisation domain NA NA NA NA NA NA NA ENOG411EJ9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Zinc finger FYVE domain containing 26 NA NA NA NA NA NA NA ENOG411EJ9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE2K Q9SL80,A8MR32 Q9SL80_ARATH,A8MR32_ARATH Gls protein (DUF810) (Uncharacterized protein At2g20010),Gls protein (DUF810) 106351,94025 Gls protein (DUF810) (Uncharacterized protein At2g20010),Gls protein (DUF810) locus:2061619; AT2G20010 Protein of unknown function (DUF810) NA NA NA NA NA NA NA ENOG411EBSJ PME5,PME4 Q5MFV8,O80722 PME5_ARATH,PME4_ARATH Pectinesterase 5 (PE 5) (EC 3.1.1.11) (Pectin methylesterase 5) (AtPME5) (Pectin methylesterase 67) (AtPME67) (Protein VANGUARD 1),Pectinesterase 4 (PE 4) (EC 3.1.1.11) (Pectin methylesterase 18) (AtPME18) (Pectin methylesterase 4) (AtPME4) (VANGUARD1-like protein 1) (VGD1-like protein 1) Male gametophyte defective; Homozygotes are viable: Reduced fertility-D. Ye-2005 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. Plays an important role in growth of pollen tubes in female floral tissues, possibly via enhancing the interaction between the pollen tube and female floral tissues by modification of the cell walls (PubMed:15659637). May be regulated by MYB80 during anther development and play a role in tapetum and pollen development (PubMed:21673079). {ECO:0000269|PubMed:15659637, ECO:0000269|PubMed:21673079}.,FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. Plays an important role in growth of pollen tubes in female floral tissues, possibly via enhancing the interaction between the pollen tube and female floral tissues by modification of the cell walls. {ECO:0000269|PubMed:15659637}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT2G47040-MONOMER;,ARA:AT2G47030-MONOMER; 3.1.1.11; 3.1.1.11 64728,64138 Pectinesterase 5 (PE 5) (EC 3.1.1.11) (Pectin methylesterase 5) (AtPME5) (Pectin methylesterase 67) (AtPME67) (Protein VANGUARD 1),Pectinesterase 4 (PE 4) (EC 3.1.1.11) (Pectin methylesterase 18) (AtPME18) (Pectin methylesterase 4) (AtPME4) (VANGUARD1-like protein 1) (VGD1-like protein 1) cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490]; pollen tube growth [GO:0009860],cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; pollen tube [GO:0090406]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed throughout silique development (PubMed:16622707). During anther development, expressed from stage 9 to stage 11 in late tapetum, and mature pollen grains (PubMed:21673079). {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:21673079}. TISSUE SPECIFICITY: Expressed in pollen grains and pollen tubes. {ECO:0000269|PubMed:15659637}. locus:2041364;,locus:2041384; AT2G47040,AT2G47030 pectinesterase NA NA NA NA NA NA NA ENOG411EMFX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LIM domain protein LIM domain-containing protein PLIM2b (Pollen-expressed LIM protein 2b) (OsPLIM2b) Q7F9R9 PLI2B_ORYSJ PLIM2B Os04g0532500 LOC_Os04g45010 OsJ_15578 OSJNBa0081C01.26 OSJNBb0039L24.7 ENOG411ED58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Up-frameshift suppressor 2 Os02g0631500 protein,Os04g0523200 protein (Fragment) A0A0N7KFQ9,A0A0P0WCL0 A0A0N7KFQ9_ORYSJ,A0A0P0WCL0_ORYSJ Os02g0631500 OSNPB_020631500,Os04g0523200 OSNPB_040523200 ENOG411E1FX MTH12.18,DJC73 Q9FNA0,A0A1P8BB64,F4KJ86 Q9FNA0_ARATH,A0A1P8BB64_ARATH,F4KJ86_ARATH At5g59610 (Chaperone DnaJ-domain superfamily protein),Chaperone DnaJ-domain superfamily protein 30265,31509,29253 At5g59610 (Chaperone DnaJ-domain superfamily protein),Chaperone DnaJ-domain superfamily protein chloroplast [GO:0009507],integral component of membrane [GO:0016021] locus:2174239; AT5G59610 chaperone protein DnaJ domain containing protein, expressed (Os03g0822800 protein) (cDNA clone:J013043N03, full insert sequence),Os03g0822800 protein (Fragment) Q10BD0,A0A0P0W4U5 Q10BD0_ORYSJ,A0A0P0W4U5_ORYSJ Os03g0822800 LOC_Os03g60790 Os03g0822800 OSNPB_030822800,Os03g0822800 OSNPB_030822800 ENOG411EDH9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EDH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDH5 B9DGK6,O64856 B9DGK6_ARATH,O64856_ARATH AT2G44210 protein (Carboxyl-terminal peptidase (DUF239)),At2g44210/F4I1.2 (Carboxyl-terminal peptidase (DUF239)) (Expressed protein) 50045,46527 AT2G44210 protein (Carboxyl-terminal peptidase (DUF239)),At2g44210/F4I1.2 (Carboxyl-terminal peptidase (DUF239)) (Expressed protein) locus:2050487; AT2G44210 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EDHI HSFA1A P41151 HFA1A_ARATH Heat stress transcription factor A-1a (AtHsfA1a) (AtHsf-13) (Heat shock factor protein 1) (HSF 1) (Heat shock transcription factor 1) (HSTF 1) FUNCTION: Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 55744 Heat stress transcription factor A-1a (AtHsfA1a) (AtHsf-13) (Heat shock factor protein 1) (HSF 1) (Heat shock transcription factor 1) (HSTF 1) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to heat [GO:0009408]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Constitutively expressed. {ECO:0000269|PubMed:7948881}. locus:2005495; AT4G17750 heat shock factor NA NA NA NA NA NA NA ENOG411EDHH MLO15 O80580,F4IT46 MLO15_ARATH,F4IT46_ARATH MLO-like protein 15 (AtMlo15),MLO-like protein FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}.,FUNCTION: May be involved in modulation of pathogen defense and leaf cell death. {ECO:0000256|RuleBase:RU280816}. 56151,56323 MLO-like protein 15 (AtMlo15),MLO-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607],integral component of membrane [GO:0016021]; calmodulin binding [GO:0005516]; defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2051859; AT2G44110 mildew resistance locus o 15 NA NA NA NA NA NA NA ENOG411EDHN F4JYV3 F4JYV3_ARATH Polyketide cyclase/dehydrase and lipid transport superfamily protein 50230 Polyketide cyclase/dehydrase and lipid transport superfamily protein integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; response to wounding [GO:0009611] locus:2153428; AT5G54170 Inherit from KOG: StAR-related lipid transfer (START) domain containing NA NA NA NA NA NA NA ENOG411EDHB BZIP10,BZO2H1 O22763,A0A1P8B7A6 BZP10_ARATH,A0A1P8B7A6_ARATH Basic leucine zipper 10 (AtbZIP10) (bZIP protein 10) (Basic leucine zipper OPAQUE 2 homolog 1) (Basic leucine zipper O2 homolog 1),BZIP transcription factor family protein FUNCTION: Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. 45358,45274 Basic leucine zipper 10 (AtbZIP10) (bZIP protein 10) (Basic leucine zipper OPAQUE 2 homolog 1) (Basic leucine zipper O2 homolog 1),BZIP transcription factor family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; nutrient reservoir activity [GO:0045735]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant-type hypersensitive response [GO:0009626]; positive regulation of seed maturation [GO:2000693]; positive regulation of transcription, DNA-templated [GO:0045893]; response to molecule of oomycetes origin [GO:0002240]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] DEVELOPMENTAL STAGE: First observed in carpels and seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, trichomes, hydathodes, siliques, seeds, and flowers, mostly in vascular tissues. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. locus:2132372; AT4G02640 Basic leucine-zipper C terminal NA NA NA NA NA NA NA ENOG411EDHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYND finger NA NA NA NA NA NA NA ENOG411EDHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Di-glucose binding within endoplasmic reticulum Os08g0203700 protein (Putative Receptor-like serine/threonine kinase(RFK1)) (cDNA clone:J023101L18, full insert sequence),Os05g0257100 protein (Fragment),Os08g0201500 protein,Os08g0203400 protein (Putative Receptor-like serine/threonine kinase(RFK1)) (cDNA clone:J013162L02, full insert sequence),Os05g0256100 protein,Os05g0257100 protein (cDNA clone:J013099L16, full insert sequence),Os05g0261700 protein (Fragment),Os05g0256500 protein,Os08g0203600 protein,Os08g0203600 protein (Fragment),Os08g0203201 protein (Fragment),Os08g0203700 protein (Fragment),Os05g0253200 protein,Os05g0258400 protein,Os05g0263100 protein,Os05g0258200 protein,Os04g0291900 protein,Os08g0203300 protein,Os04g0292150 protein Q6ZKW6,Q0DJM0,Q0J7D7,Q6ZKW7,Q60EF5,B7EDI5,Q0DJL8,A0A0P0WK53,A0A0P0XCW1,A0A0P0XCY6,A0A0P0XCR0,A0A0P0XDS5,A0A0P0WJU3,A0A0N7KKF3,A0A0N7KPF6,A0A0P0WJV8,A0A0P0XDF2,A0A0P0WJZ9,A0A0P0W899,A0A0P0XD11,A0A0P0XD16,A0A0N7KIS4 Q6ZKW6_ORYSJ,Q0DJM0_ORYSJ,Q0J7D7_ORYSJ,Q6ZKW7_ORYSJ,Q60EF5_ORYSJ,B7EDI5_ORYSJ,Q0DJL8_ORYSJ,A0A0P0WK53_ORYSJ,A0A0P0XCW1_ORYSJ,A0A0P0XCY6_ORYSJ,A0A0P0XCR0_ORYSJ,A0A0P0XDS5_ORYSJ,A0A0P0WJU3_ORYSJ,A0A0N7KKF3_ORYSJ,A0A0N7KPF6_ORYSJ,A0A0P0WJV8_ORYSJ,A0A0P0XDF2_ORYSJ,A0A0P0WJZ9_ORYSJ,A0A0P0W899_ORYSJ,A0A0P0XD11_ORYSJ,A0A0P0XD16_ORYSJ,A0A0N7KIS4_ORYSJ OJ1014_H11.17-1 Os08g0203700 OSNPB_080203700,Os05g0257100 Os05g0257100 OSNPB_050257100,Os08g0201500 Os08g0201500 OSNPB_080201500,Os08g0203400 OJ1014_H11.14 OSNPB_080203400,Os05g0256100 OSNPB_050256100 P0537C11.11,Os05g0257100 OSNPB_050257100,Os05g0261700 Os05g0261700 OSNPB_050261700,Os05g0256500 OSNPB_050256500,Os08g0203600 OSNPB_080203600,Os08g0203201 OSNPB_080203201,Os08g0203700 OSNPB_080203700,Os05g0253200 OSNPB_050253200,Os05g0258400 OSNPB_050258400,Os05g0263100 OSNPB_050263100,Os05g0258200 OSNPB_050258200,Os04g0291900 OSNPB_040291900,Os08g0203300 OSNPB_080203300,Os04g0292150 OSNPB_040292150 ENOG411EDHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcriptional corepressor LEUNIG-like NA NA NA NA NA NA NA ENOG411EDHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDHR Q9LNN2,Q9LNN1 LECT3_ARATH,LECT1_ARATH Lectin-like protein At1g53070,Lectin-like protein At1g53060 30378,27011 Lectin-like protein At1g53070,Lectin-like protein At1g53060 apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; plant-type cell wall [GO:0009505]; carbohydrate binding [GO:0030246]; response to karrikin [GO:0080167],carbohydrate binding [GO:0030246] locus:2037021;,locus:2037031; AT1G53070,AT1G53060 legume lectin family protein NA NA NA NA NA NA NA ENOG411EDHQ HHO6 Q9FX84,A0A1P8AUH8 HHO6_ARATH,A0A1P8AUH8_ARATH Transcription factor HHO6 (MYB-domain transcription factor HHO6) (Protein HRS1 HOMOLOG 6),Homeodomain-like superfamily protein FUNCTION: Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. 37381,29605 Transcription factor HHO6 (MYB-domain transcription factor HHO6) (Protein HRS1 HOMOLOG 6),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2010297; AT1G49560 MYB family transcription factor NA NA NA NA NA NA NA ENOG411EDHW NRPD7 Q8LE42 NRPD7_ARATH DNA-directed RNA polymerase IV subunit 7 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase IV which mediates 24-nt short-interfering RNAs (siRNA) accumulation. Implicated in siRNA-directed heterochromatin formation through the action of DCL3 and AGO4, and subsequent DNA methylation-dependent silencing of targeted sequences. Essential component of a self-reinforcing loop coupling de novo DNA methylation to siRNA production. Required for intercellular but not intracellular RNA interference (RNAi) leading to systemic post-transcriptional gene silencing. Involved in the maintenance of post-transcriptional RNA silencing. {ECO:0000269|PubMed:19110459}. 19849 DNA-directed RNA polymerase IV subunit 7 DNA-directed RNA polymerase IV complex [GO:0000418]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; single-stranded DNA binding [GO:0003697]; single-stranded RNA binding [GO:0003727]; transcription, DNA-templated [GO:0006351] locus:2084573; AT3G22900 RNA Polymerase NA NA NA NA NA NA NA ENOG411E1FR PCMP-H86 P0C898 PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130 77041 Putative pentatricopeptide repeat-containing protein At3g15130 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2083631; AT3G15130 Pentatricopeptide repeat-containing protein Os04g0686500 protein (Fragment) A0A0P0WGL0 A0A0P0WGL0_ORYSJ Os04g0686500 OSNPB_040686500 ENOG411E1FU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat-containing protein NA NA NA NA NA NA NA ENOG411E1FE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein Probable aquaporin PIP2-8 (OsPIP2;8) (Plasma membrane intrinsic protein 2-8) Q7Y1E6 PIP28_ORYSJ PIP2-8 Os03g0861300 LOC_Os03g64330 OSJNBa0033P04.25 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411E3SV Q6NM27 Q6NM27_ARATH At2g37820 (Cysteine/Histidine-rich C1 domain family protein) (PHD domain protein) 32973 At2g37820 (Cysteine/Histidine-rich C1 domain family protein) (PHD domain protein) cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2065573; AT2G37820 DC1 domain-containing protein Os07g0609600 protein Q6YTW9 Q6YTW9_ORYSJ Os07g0609600 OsJ_25082 OSJNBb0018L13.20 OSNPB_070609600 ENOG411E3S5 NHL10,NHL3 Q9SJ52,Q9FNH6 NHL10_ARATH,NHL3_ARATH NDR1/HIN1-like protein 10 (AtNHL10) (Protein YELLOW-LEAF-SPECIFIC GENE 9),NDR1/HIN1-like protein 3 FUNCTION: May play a role in plant immunity. {ECO:0000250|UniProtKB:Q9ZVD2}.,FUNCTION: Confers resistance to Pseudomonas syringae pv. tomato DC3000 (Pst DC3000). {ECO:0000269|PubMed:12913158}. 25659,25947 NDR1/HIN1-like protein 10 (AtNHL10) (Protein YELLOW-LEAF-SPECIFIC GENE 9),NDR1/HIN1-like protein 3 anchored component of plasma membrane [GO:0046658]; chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response to virus [GO:0051607]; leaf senescence [GO:0010150]; response to other organism [GO:0051707],anchored component of plasma membrane [GO:0046658]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; signal transducer activity [GO:0004871]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to virus [GO:0051607]; response to bacterium [GO:0009617]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611] DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571}. TISSUE SPECIFICITY: Expressed in senescing leaves. {ECO:0000269|PubMed:11230571, ECO:0000269|PubMed:14666423}.,TISSUE SPECIFICITY: Expressed in roots, young and senescing leaves, cauline leaves, stems and siliques. {ECO:0000269|PubMed:14666423}. locus:2039185;,locus:2164305; AT2G35980,AT5G06320 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E3S7 MMI9.21,MMI9.17 Q9LVA4,Q9LVA5 Q9LVA4_ARATH,Q9LVA5_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein (Ripening-related protein-like) (Ripening-related protein-like; contains similarity to pectinesterase),At5g62340 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Similarity to ripening-related protein) 22179,22764 Plant invertase/pectin methylesterase inhibitor superfamily protein (Ripening-related protein-like) (Ripening-related protein-like; contains similarity to pectinesterase),At5g62340 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Similarity to ripening-related protein) enzyme inhibitor activity [GO:0004857] locus:2168003;,locus:2167993; AT5G62350,AT5G62340 invertase pectin methylesterase inhibitor family protein DC NA NA NA NA NA NA NA ENOG411E731 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0557366 protein A0A0P0XXD8 A0A0P0XXD8_ORYSJ Os10g0557366 OSNPB_100557366 ENOG411E730 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E735 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0481900 protein A0A0P0WWQ6 A0A0P0WWQ6_ORYSJ Os06g0481900 OSNPB_060481900 ENOG411E734 T1B9.10 Q9SFV3 Q9SFV3_ARATH At3g07230 (Putative wound-induced basic protein) (Wound-responsive protein-like protein) 5305 At3g07230 (Putative wound-induced basic protein) (Wound-responsive protein-like protein) cytosol [GO:0005829]; response to cytokinin [GO:0009735] locus:2098475; AT3G07230 Wound-induced basic Os12g0405700 protein Q0INR8 Q0INR8_ORYSJ Os12g0405700 Os12g0405700 OSNPB_120405700 ENOG411E737 LLG2,LLG3 Q6NLF4,Q9M0I0,A0A1P8B5I2 LLG2_ARATH,LLG3_ARATH,A0A1P8B5I2_ARATH GPI-anchored protein LLG2 (LORELEI-like-GPI-anchored protein 2),LORELEI-LIKE-GPI ANCHORED PROTEIN 3 DISRUPTION PHENOTYPE: No aborted seed phenotype and normal production of seed sets. {ECO:0000269|PubMed:20163554}. 17777,17575,15241 GPI-anchored protein LLG2 (LORELEI-like-GPI-anchored protein 2),LORELEI-LIKE-GPI ANCHORED PROTEIN 3 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; pollen tube [GO:0090406] TISSUE SPECIFICITY: Expressed in pollen, pollen tubes, sporophytic pistil tissues, in the early stages of female gametophyte development, and in unfertilized, mature ovules. {ECO:0000269|PubMed:20163554}. locus:2051389;,locus:2123673; AT2G20700,AT4G28280 gpi-anchored protein Os06g0303800 protein (Fragment) A0A0P0WVY0 A0A0P0WVY0_ORYSJ Os06g0303800 OSNPB_060303800 ENOG411E736 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRC Os10g0445900 protein A0A0P0XVF9 A0A0P0XVF9_ORYSJ Os10g0445900 OSNPB_100445900 ENOG411E739 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Early nodulin 75-like protein (Os07g0142300 protein),Expressed protein (Os03g0782400 protein),Early nodulin 75-like protein (Os07g0142500 protein),Os07g0142200 protein (Proline-rich protein-like) (cDNA clone:002-152-F01, full insert sequence),Os04g0521900 protein Q7F168,Q10CH8,Q8H4K2,Q8H4K4,Q0JBN3 Q7F168_ORYSJ,Q10CH8_ORYSJ,Q8H4K2_ORYSJ,Q8H4K4_ORYSJ,Q0JBN3_ORYSJ OJ1351_C05.123 Os07g0142300 OSNPB_070142300,Os03g0782400 LOC_Os03g56944 OSNPB_030782400,OJ1351_C05.124 Os07g0142500 OSNPB_070142500,OJ1351_C05.121 Os07g0142200 OSNPB_070142200,Os04g0521900 Os04g0521900 OsJ_15494 OSNPB_040521900 ENOG411E73A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E73B SAP10 Q9STJ9 SAP10_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 10 (AtSAP10) FUNCTION: May be involved in environmental stress response. {ECO:0000250}. 14641 Zinc finger A20 and AN1 domain-containing stress-associated protein 10 (AtSAP10) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; zinc ion binding [GO:0008270]; cellular response to cold [GO:0070417]; cellular response to heat [GO:0034605]; cellular response to salt stress [GO:0071472]; response to manganese ion [GO:0010042]; response to metal ion [GO:0010038]; response to nickel cation [GO:0010045]; response to zinc ion [GO:0010043] locus:2138053; AT4G25380 zinc finger A20 and AN1 domain-containing stress-associated protein NA NA NA NA NA NA NA ENOG411E73E O80698 O80698_ARATH At1g61930 (F8K4.12) (Uncharacterized protein At1g61930) 22249 At1g61930 (F8K4.12) (Uncharacterized protein At1g61930) locus:2036803; AT1G61930 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E73D DIR1,MJE7.13 Q8W453,Q9LV65 DIRL1_ARATH,Q9LV65_ARATH Putative lipid-transfer protein DIR1 (Protein DEFECTIVE IN INDUCED RESISTANCE 1),At5g48490 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but compromised pathogen-induced glycerol-3-phosphate-(G3P) and azelaic acid- (AA) dependent systemic acquired resistance (SAR). {ECO:0000269|PubMed:12353036, ECO:0000269|PubMed:23602565}. Altered systemic acquired resistance response-R. Cameron-2002 FUNCTION: Putative lipid transfer protein required for systemic acquired resistance (SAR) long distance signaling. May interact with a lipid-derived molecule to promote long distance signaling associated with SAR. Together with AZI1, required for glycerol-3-phosphate- (G3P) and azelaic acid- (AA) induced systemic acquired resistance (SAR). Component of plant systemic immunity involved in priming defenses in a AA-dependent manner, by modulating production and/or translocation of a mobile signal(s) during SAR. {ECO:0000269|PubMed:12353036, ECO:0000269|PubMed:23602565}. 10702,10754 Putative lipid-transfer protein DIR1 (Protein DEFECTIVE IN INDUCED RESISTANCE 1),At5g48490 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) apoplast [GO:0048046]; endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506]; fatty acid binding [GO:0005504]; protein self-association [GO:0043621]; zinc ion binding [GO:0008270]; lipid transport [GO:0006869]; systemic acquired resistance [GO:0009627]; systemic acquired resistance, salicylic acid mediated signaling pathway [GO:0009862] locus:505006681;,locus:2166014; AT5G48485,AT5G48490 lipid-transfer protein Os07g0287400 protein (cDNA clone:001-108-F06, full insert sequence) Q8GVT9 Q8GVT9_ORYSJ P0045F02.128 Os07g0287400 OsJ_23875 OSNPB_070287400 ENOG411E73G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: C2H2 zinc finger protein NA NA NA NA NA NA NA ENOG411E73I F28J7.27,MEE6.5 Q9S7L7,Q9FLN1,B3H5H0 Q9S7L7_ARATH,Q9FLN1_ARATH,B3H5H0_ARATH F1C9.28 protein (F28J7.27 protein) (Transmembrane protein, putative (DUF 3339)),AT.I.24-6 protein, putative (DUF 3339) (At5g40980) (Gb|AAF03445.1),GPI-anchored-like protein (DUF 3339) 7504,7608,7640 F1C9.28 protein (F28J7.27 protein) (Transmembrane protein, putative (DUF 3339)),AT.I.24-6 protein, putative (DUF 3339) (At5g40980) (Gb|AAF03445.1),GPI-anchored-like protein (DUF 3339) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2078628;,locus:2163006;,locus:4515103138; AT3G01940,AT5G40980,AT3G27027 Protein of unknown function (DUF3339) Os02g0508801 protein Q6K2G2 Q6K2G2_ORYSJ Os02g0508801 OsJ_06865 OSJNBa0052M16.22 OSNPB_020508801 ENOG411E73H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E73K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: kiaa1429 NA NA NA NA NA NA NA ENOG411E73J SAUR17 Q9M0P0 Q9M0P0_ARATH SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g09530) 11951 SAUR-like auxin-responsive protein family (Uncharacterized protein AT4g09530) response to auxin [GO:0009733] locus:2133757; AT4G09530 Auxin responsive protein NA NA NA NA NA NA NA ENOG411E73Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cpn10 NA NA NA NA NA NA NA ENOG411E73P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nitrilase-associated protein Protein SPIRAL1-like 1,Protein SPIRAL1-like 2 Q7Y1L9,Q2R0W8 SP1L1_ORYSJ,SP1L2_ORYSJ Os03g0417800 LOC_Os03g30430 OsJ_11276 OSJNBb0056B16.13,Os11g0629400 LOC_Os11g41150 OsJ_34517 FUNCTION: Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth. {ECO:0000250}. ENOG411E73S Q93ZD8 Q93ZD8_ARATH AT5g20880/F22D1_50 (RING/U-box superfamily protein) (Uncharacterized protein At5g20885/At5g20880) 19935 AT5g20880/F22D1_50 (RING/U-box superfamily protein) (Uncharacterized protein At5g20885/At5g20880) integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:505006623; AT5G20885 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E73R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0438100 protein) (cDNA clone:002-139-B05, full insert sequence) Q2QS70 Q2QS70_ORYSJ Os12g0438100 LOC_Os12g25130 Os12g0438100 OSNPB_120438100 ENOG411E73U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) Os05g0551500 protein (cDNA clone:002-138-F01, full insert sequence) (cDNA clone:002-140-H09, full insert sequence) Q6L4G3 Q6L4G3_ORYSJ P0560C03.13 Os05g0551500 OSJNBa0079H23.7 OSNPB_050551500 ENOG411E73T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E73W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411E73V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E73X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os05g0543000 protein Q65XN3 Q65XN3_ORYSJ Os05g0543000 OJ1288_A07.6 OsJ_19407 OSNPB_050543000 ENOG411E73Z Q9LJN0 Q9LJN0_ARATH At3g19660 (Uncharacterized protein At3g19660) 7464 At3g19660 (Uncharacterized protein At3g19660) locus:2091156; AT3G19660 NA NA NA NA NA NA NA NA ENOG411E3S8 O49453 Y4844_ARATH Uncharacterized protein At4g28440 16459 Uncharacterized protein At4g28440 cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2121313; AT4G28440 Inherit from NOG: DNA-binding protein-related NA NA NA NA NA NA NA ENOG411E1F3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF933) NA NA NA NA NA NA NA ENOG411E1F7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative undecaprenyl diphosphate synthase NA NA NA NA NA NA NA ENOG411DU5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Lipase-like (Os01g0651000 protein) Q8RZ48 Q8RZ48_ORYSJ OJ1159_D09.20 Os01g0651000 OSNPB_010651000 ENOG411DXMI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: L-type lectin-domain containing receptor kinase Os07g0100900 protein (cDNA clone:001-205-C11, full insert sequence) Q69LA0 Q69LA0_ORYSJ Os07g0100900 B1026C12.13 OsJ_22766 OSNPB_070100900 ENOG411DXMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os09g0245500 protein (Fragment) A0A0P0XIU3 A0A0P0XIU3_ORYSJ Os09g0245500 OSNPB_090245500 ENOG411DXMG SOT13 Q9ZPQ5 SOT13_ARATH Cytosolic sulfotransferase 13 (AtSOT13) (EC 2.8.2.-) DISRUPTION PHENOTYPE: No effect on sensitivity to salicylic acid. {ECO:0000269|PubMed:20374532}. FUNCTION: Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. {ECO:0000250}. ARA:AT2G03770-MONOMER; R-ATH-156584; 2.8.2.- 37717 Cytosolic sulfotransferase 13 (AtSOT13) (EC 2.8.2.-) cytoplasm [GO:0005737]; flavonoid sulfotransferase activity [GO:1990135]; sulfotransferase activity [GO:0008146]; flavonoid metabolic process [GO:0009812] locus:2044249; AT2G03770 Sulfotransferase domain Sulfotransferase (EC 2.8.2.-) Q69RG0,A0A0P0W9I4 Q69RG0_ORYSJ,A0A0P0W9I4_ORYSJ Os07g0605800 Os07g0605800 OSNPB_070605800 P0493C06.9,Os04g0359300 OSNPB_040359300 ENOG411DXMZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyltransferase family 43 Probable glucuronosyltransferase Os01g0675500 (EC 2.4.-.-),Probable glucuronosyltransferase Os05g0559600 (EC 2.4.-.-),Glycosyltransferases (EC 2.4.-.-) (Fragment) Q5QM25,Q6AT32,A0A0P0V6K3 GT12_ORYSJ,GT52_ORYSJ,A0A0P0V6K3_ORYSJ Os01g0675500 LOC_Os01g48440 OJ1117_G01.11 OsJ_02989 P0485G01.45,Os05g0559600 LOC_Os05g48600 OJ1115_B06.1 OSJNBa0001A14.15,Os01g0675500 OSNPB_010675500 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}.,FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000256|RuleBase:RU363127}. ENOG411DXMV A0A1P8BBR6 A0A1P8BBR6_ARATH Mutator transposase MUDRA protein 57010 Mutator transposase MUDRA protein transposon protein Os04g0350900 protein (Os04g0351600 protein) (Os05g0379100 protein),Os06g0704400 protein,Os11g0256400 protein (Fragment),Os03g0779400 protein A0A0P0WLN2,Q0D9Q1,Q0ITH1,A0A0P0W3R6 A0A0P0WLN2_ORYSJ,Q0D9Q1_ORYSJ,Q0ITH1_ORYSJ,A0A0P0W3R6_ORYSJ Os05g0379100 Os04g0350900 Os04g0351600 OSNPB_040350900 OSNPB_040351600 OSNPB_050379100,Os06g0704400 Os06g0704400 OSNPB_060704400,Os11g0256400 OSNPB_110256400,Os03g0779400 OSNPB_030779400 ENOG411DXM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Lectin protein kinase, putative, expressed (Os10g0441900 protein) (cDNA clone:001-203-H11, full insert sequence) Q337T3 Q337T3_ORYSJ LOC_Os10g30530 Os10g0441900 OSNPB_100441900 ENOG411EE7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411DYE6 DEGP15,DEGP10,DEGP6,DEGP13 Q3E8B4,Q9FIV6,Q9C691,Q9FM41 DGP15_ARATH,DGP10_ARATH,DEGP6_ARATH,DGP13_ARATH Putative Do-like 15 protein,Protease Do-like 10, mitochondrial (EC 3.4.21.-),Putative protease Do-like 6, chloroplastic (DEGP protease 6) (EC 3.4.21.-),Putative protease Do-like 13 (EC 3.4.21.-) FUNCTION: Probable serine protease.,FUNCTION: Putative serine protease. 3.4.21.- 21721,64726,24609,54150 Putative Do-like 15 protein,Protease Do-like 10, mitochondrial (EC 3.4.21.-),Putative protease Do-like 6, chloroplastic (DEGP protease 6) (EC 3.4.21.-),Putative protease Do-like 13 (EC 3.4.21.-) mitochondrial matrix [GO:0005759]; serine-type endopeptidase activity [GO:0004252],chloroplast [GO:0009507]; serine-type peptidase activity [GO:0008236],serine-type endopeptidase activity [GO:0004252] locus:504954966;,locus:2167468;,locus:2008286; AT5G54745,AT5G36950,AT1G51150,AT5G40560 Protease Do-like 10 Os05g0417100 protein (Putative serine protease) (cDNA clone:J033023K08, full insert sequence) Q6AT72 Q6AT72_ORYSJ Os05g0417100 Os05g0417100 OSJNBa0084P24.16 OSNPB_050417100 P0579A05.2 ENOG411DYE4 Q8L9R0,A2RVU7,A0A1P8B712 Q8L9R0_ARATH,A2RVU7_ARATH,A0A1P8B712_ARATH At4g31150 (Endonuclease V family protein) (Uncharacterized protein At4g31150),At4g31150 (Endonuclease V family protein),Endonuclease V family protein ARA:AT4G31150-MONOMER; 30881,29504,23128 At4g31150 (Endonuclease V family protein) (Uncharacterized protein At4g31150),At4g31150 (Endonuclease V family protein),Endonuclease V family protein endonuclease activity [GO:0004519]; DNA repair [GO:0006281] locus:2126291; AT4G31150 endonuclease Endonuclease V protein-like (Os06g0663600 protein) (cDNA clone:J023120P09, full insert sequence) Q653Z3 Q653Z3_ORYSJ Os06g0663600 OSJNBb0065C04.45 OSNPB_060663600 ENOG411DYE5 ABCC11,ABCC2,ABCC12,ABCC1 Q9C8H1,Q42093,Q9C8H0,Q9C8G9,A0A1P8AW56,A0A1P8AW42,A0A1P8AQA4,A0A1P8AZX4 AB11C_ARATH,AB2C_ARATH,AB12C_ARATH,AB1C_ARATH,A0A1P8AW56_ARATH,A0A1P8AW42_ARATH,A0A1P8AQA4_ARATH,A0A1P8AZX4_ARATH ABC transporter C family member 11 (ABC transporter ABCC.11) (AtABCC11) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 12) (Glutathione S-conjugate-transporting ATPase 12) (Multidrug resistance-associated protein 12),ABC transporter C family member 2 (ABC transporter ABCC.2) (AtABCC2) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 2) (Glutathione S-conjugate-transporting ATPase 2) (Multidrug resistance-associated protein 2),ABC transporter C family member 12 (ABC transporter ABCC.12) (AtABCC12) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 13) (Glutathione S-conjugate-transporting ATPase 13) (Multidrug resistance-associated protein 13),ABC transporter C family member 1 (ABC transporter ABCC.1) (AtABCC1) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 1) (Glutathione S-conjugate-transporting ATPase 1) (Multidrug resistance-associated protein 1),Multidrug resistance-associated protein 13,Multidrug resistance-associated protein 12,Multidrug resistance-associated protein 2 Sensitive to arsenic-E. Martinoia-2010,Sensitive to methotrexate-M. Klein-2008 FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}.,FUNCTION: Pump for glutathione S-conjugates. Mediates the transport of S-conjugates such as GSH, S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS), glucuronides such as 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG), and of the chlorophyll catabolite such as B.napus nonfluorescent chlorophyll catabolite (Bn-NCC-1). {ECO:0000269|PubMed:11115509, ECO:0000269|PubMed:9490749}.,FUNCTION: Pump for glutathione S-conjugates. Mediates the transport of S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS). {ECO:0000269|PubMed:9223346}. ARA:AT1G30420-MONOMER;,ARA:AT2G34660-MONOMER;,ARA:AT1G30410-MONOMER;,ARA:AT1G30400-MONOMER; R-ATH-114608;R-ATH-2142850;R-ATH-382556;R-ATH-5689880;R-ATH-8856825; 3.6.3.44 168104,182130,167956,181927,153497,154838,122694,149008 ABC transporter C family member 11 (ABC transporter ABCC.11) (AtABCC11) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 12) (Glutathione S-conjugate-transporting ATPase 12) (Multidrug resistance-associated protein 12),ABC transporter C family member 2 (ABC transporter ABCC.2) (AtABCC2) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 2) (Glutathione S-conjugate-transporting ATPase 2) (Multidrug resistance-associated protein 2),ABC transporter C family member 12 (ABC transporter ABCC.12) (AtABCC12) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 13) (Glutathione S-conjugate-transporting ATPase 13) (Multidrug resistance-associated protein 13),ABC transporter C family member 1 (ABC transporter ABCC.1) (AtABCC1) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 1) (Glutathione S-conjugate-transporting ATPase 1) (Multidrug resistance-associated protein 1),Multidrug resistance-associated protein 13,Multidrug resistance-associated protein 12,Multidrug resistance-associated protein 2 integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity [GO:1902417]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; calmodulin binding [GO:0005516]; xenobiotic-transporting ATPase activity [GO:0008559]; (+)-abscisic acid D-glucopyranosyl ester transmembrane transport [GO:1902418],integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity [GO:1902417]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; ATPase-coupled arsenite transmembrane transporter activity [GO:0015446]; calmodulin binding [GO:0005516]; phytochelatin transmembrane transporter activity [GO:0071992]; xenobiotic-transporting ATPase activity [GO:0008559]; (+)-abscisic acid D-glucopyranosyl ester transmembrane transport [GO:1902418]; arsenite transport [GO:0015700]; response to arsenic-containing substance [GO:0046685],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}.,TISSUE SPECIFICITY: Ubiquitous, at low levels. {ECO:0000269|PubMed:12430019, ECO:0000269|PubMed:9490749}.,TISSUE SPECIFICITY: Ubiquitous, with higher levels in leaves and stems and lower levels in roots. Localized in the root apex, root hair tips and root epidermis. {ECO:0000269|PubMed:12430019, ECO:0000269|PubMed:15133126, ECO:0000269|PubMed:9223346, ECO:0000269|PubMed:9490749}. locus:2028155;,locus:2061559;,locus:2204202; AT1G30420,AT2G34660,AT1G30410,AT1G30400 ABC transporter C family member Os04g0620000 protein (Fragment),Os04g0620066 protein Q0JA19,A0A0P0WF03 Q0JA19_ORYSJ,A0A0P0WF03_ORYSJ Os04g0620000 Os04g0620000 OSNPB_040620000,Os04g0620066 OSNPB_040620066 ENOG411DYE2 Q94CK1 Q94CK1_ARATH At5g12410 (At5g12410/At5g12410) (THUMP domain-containing protein) (Uncharacterized protein At5g12410) 41940 At5g12410 (At5g12410/At5g12410) (THUMP domain-containing protein) (Uncharacterized protein At5g12410) cytosol [GO:0005829]; RNA binding [GO:0003723]; tRNA modification [GO:0006400] locus:505006609; AT5G12410 THUMP domain-containing protein Os11g0568600 protein (THUMP domain containing protein, expressed) (cDNA clone:002-184-A08, full insert sequence),Os11g0568600 protein (THUMP domain containing protein, expressed) (cDNA clone:J033082H18, full insert sequence) B7F5C0,Q2R2E7 B7F5C0_ORYSJ,Q2R2E7_ORYSJ Os11g0568600 LOC_Os11g36060 OSNPB_110568600,Os11g0568600 LOC_Os11g36060 Os11g0568600 OsJ_34303 OSNPB_110568600 ENOG411DYE3 THO1 Q93VM9,F4KFC9 THOC1_ARATH,F4KFC9_ARATH THO complex subunit 1 (AtTHO1) (HPR1 homolog) (AtHPR1),Nuclear matrix protein-like protein DISRUPTION PHENOTYPE: Developmental defects as well as reduced levels of endogenous trans-acting small interfering RNA (ta-siRNA). {ECO:0000269|PubMed:20668032, ECO:0000269|PubMed:20798330}. FUNCTION: Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. Contributes to the integrity of the endogenous trans-acting small interfering RNA (ta-siRNA) pathway. May process or transport a long RNA molecule so that it can be a template for secondary siRNA production. May participate in the trafficking of siRNA precursors to the ARGONAUTE catalytic center. Required for the generation of functional messenger ribonucleoproteins (mRNPs). Plays an important roles in plant innate immunity. {ECO:0000269|PubMed:20668032, ECO:0000269|PubMed:20798330, ECO:0000269|PubMed:22035198}. 68334,68206 THO complex subunit 1 (AtTHO1) (HPR1 homolog) (AtHPR1),Nuclear matrix protein-like protein nucleus [GO:0005634]; THO complex [GO:0000347]; RNA binding [GO:0003723]; defense response to fungus [GO:0050832]; ethylene-activated signaling pathway [GO:0009873]; gene silencing by RNA [GO:0031047]; mRNA export from nucleus [GO:0006406]; mRNA processing [GO:0006397]; production of ta-siRNAs involved in RNA interference [GO:0010267]; RNA splicing [GO:0008380] locus:2178183; AT5G09860 Tho complex subunit Os03g0110400 protein (THO complex subunit 1, putative, expressed),Os03g0110400 protein (Fragment) Q10SU9,A0A0P0VS60 Q10SU9_ORYSJ,A0A0P0VS60_ORYSJ LOC_Os03g01970 Os03g0110400 OSNPB_030110400,Os03g0110400 OSNPB_030110400 ENOG411DYE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF303) Expressed protein (Os03g0857600 protein) (cDNA clone:006-206-D05, full insert sequence) (cDNA clone:J023117O12, full insert sequence) Q84M79 Q84M79_ORYSJ LOC_Os03g64050 Os03g0857600 OSJNBa0059G06.14 OSNPB_030857600 ENOG411DYE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ORMDL family Os07g0452500 protein (Putative ORMDL2) (cDNA clone:001-041-E11, full insert sequence) (cDNA clone:J013146B09, full insert sequence),Os07g0452500 protein Q7EY59,A0A0P0X607 Q7EY59_ORYSJ,A0A0P0X607_ORYSJ OSJNBb0062P14.116-1 Os07g0452500 OSNPB_070452500,Os07g0452500 OSNPB_070452500 ENOG411DYE8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative lysophospholipase Os01g0837200 protein (Fragment) A0A0P0VA40 A0A0P0VA40_ORYSJ Os01g0837200 OSNPB_010837200 ENOG411DYE9 T22K7_10 Q9M292 Q9M292_ARATH Nicalin FUNCTION: May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning. {ECO:0000256|PIRNR:PIRNR011018}. 62202 Nicalin endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; protein processing [GO:0016485]; regulation of signal transduction [GO:0009966] locus:2100192; AT3G44330 Nicastrin Nicalin,Os12g0509400 protein Q6Z1Y4,A0A0P0YAM6 Q6Z1Y4_ORYSJ,A0A0P0YAM6_ORYSJ Os08g0102100 Os08g0102100 B1147B12.25 OsJ_25727 OSNPB_080102100 P0015C07.8,Os12g0509400 OSNPB_120509400 FUNCTION: May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning. {ECO:0000256|PIRNR:PIRNR011018}. ENOG411DYEV RBL15 Q8LB17,F4J5V3 RBL15_ARATH,F4J5V3_ARATH Rhomboid-like protein 15 (AtRBL15) (EC 3.4.21.-),RHOMBOID-like protein 15 FUNCTION: Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in senescence. {ECO:0000303|PubMed:22007993}. 3.4.21.- 44145,46794 Rhomboid-like protein 15 (AtRBL15) (EC 3.4.21.-),RHOMBOID-like protein 15 integral component of membrane [GO:0016021]; serine-type endopeptidase activity [GO:0004252] locus:2076396; AT3G58460 Der1-like family Os03g0651100 protein (Putative Rhomboid family protein) Q53KX4 Q53KX4_ORYSJ Os03g0651100 Os03g0651100 OSNPB_030651100 ENOG411DYEW PCMP-E77 Q9SII7 PP159_ARATH Pentatricopeptide repeat-containing protein At2g17210 81602 Pentatricopeptide repeat-containing protein At2g17210 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2059687; AT2G17210 Pentatricopeptide repeat-containing protein Os02g0833050 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6K957 Q6K957_ORYSJ Os02g0833050 OJ1149_C12.31 OJ1282_E10.7 OSNPB_020833050 ENOG411DYET Q8GYM2 PP393_ARATH Pentatricopeptide repeat-containing protein At5g18950 55000 Pentatricopeptide repeat-containing protein At5g18950 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2144915; AT5G18950 Pentatricopeptide repeat-containing protein Os03g0363700 protein (Pentatricopeptide, putative) Q10L04 Q10L04_ORYSJ Os03g0363700 LOC_Os03g24880 Os03g0363700 OSNPB_030363700 ENOG411DYEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os01g0373500 protein (cDNA clone:002-124-G08, full insert sequence) Q93VM2 Q93VM2_ORYSJ Os01g0373500 B1039D07.39 B1045D11.17 OsJ_01821 OSNPB_010373500 ENOG411DYER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Glycosyl hydrolases family 17 protein, expressed (Os03g0845600 protein) (Putative beta-1,3-glucanase) (cDNA clone:002-147-H05, full insert sequence) Q84SP3 Q84SP3_ORYSJ OSJNBa0032G11.29 LOC_Os03g62860 Os03g0845600 OsJ_13350 OSJNBb0043P23.24 OSNPB_030845600 ENOG411DYES Q6NM03 Q6NM03_ARATH At2g25605 (DNA-directed RNA polymerase subunit beta) 23452 At2g25605 (DNA-directed RNA polymerase subunit beta) DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:504956018; AT2G25605 NA Os05g0574700 protein (cDNA clone:002-149-B07, full insert sequence),Os05g0574700 protein (cDNA clone:002-182-C01, full insert sequence) Q0DFR7,B7F3P2 Q0DFR7_ORYSJ,B7F3P2_ORYSJ Os05g0574700 Os05g0574700 OsJ_19637 OSNPB_050574700,Os05g0574700 OSNPB_050574700 ENOG411DYEP APG P40602,B3H6L2,F4HSP7 APG_ARATH,B3H6L2_ARATH,F4HSP7_ARATH Anther-specific proline-rich protein APG,GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT1G20130-MONOMER;,ARA:AT1G20132-MONOMER; 58008,42699,55725 Anther-specific proline-rich protein APG,GDSL-like Lipase/Acylhydrolase superfamily protein lipase activity [GO:0016298]; structural constituent of cell wall [GO:0005199]; lipid metabolic process [GO:0006629],lipase activity [GO:0016298]; lipid metabolic process [GO:0006629] DEVELOPMENTAL STAGE: Expressed in male gametogenesis, during microspore development. Higher expression is found during microspore mitosis with a dramatic decline during pollen maturation. TISSUE SPECIFICITY: Found in sporophytic and gametophytic cell types in the anther, only in male fertile plants. locus:2198636;,locus:4515102552; AT1G20130,AT1G20132 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411DYEQ NUFIP Q5BPJ1 Q5BPJ1_ARATH GATA zinc finger protein 53645 GATA zinc finger protein apoplast [GO:0048046]; nucleus [GO:0005634]; snoRNA binding [GO:0030515]; box C/D snoRNP assembly [GO:0000492]; small nucleolar ribonucleoprotein complex assembly [GO:0000491] locus:2146238; AT5G18440 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) Os01g0814000 protein Q5N769 Q5N769_ORYSJ Os01g0814000 OSJNBa0085D07.19 OSNPB_010814000 ENOG411DYEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glucosyl transferase, putative, expressed (Os03g0757200 protein) (Putative glucosyltransferase) (cDNA clone:J023078E19, full insert sequence) Q9AUV2 Q9AUV2_ORYSJ Os03g0757200 LOC_Os03g55030 Os03g0757200 OSJNBa0040E01.5 OSNPB_030757200 ENOG411DYEX RLP46 F4JGB6 F4JGB6_ARATH Receptor like protein 46 90838 Receptor like protein 46 locus:2137296; AT4G04220 Leucine rich repeat N-terminal domain Os08g0266400 protein (Putative disease resistance protein),Os02g0161500 protein Q6YTK4,A0A0P0VEW7 Q6YTK4_ORYSJ,A0A0P0VEW7_ORYSJ Os08g0266400 Os08g0266400 OsJ_26667 OSJNBa0023I13.31 OSNPB_080266400,Os02g0161500 OSNPB_020161500 ENOG411DYEY TCP2 Q93V43 TCP2_ARATH Transcription factor TCP2 (Protein TEOSINTE BRANCHED 1) (Protein TEOSINTE-LIKE1, CYCLOIDEA, and PROLIFERATING CELL FACTOR 2) DISRUPTION PHENOTYPE: Reduced light-mediated transcription of CHS, CAB, HYH and HY5. Impaired influence of blue light on hypocotyl elongation. {ECO:0000269|PubMed:26596765}. FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. 40179 Transcription factor TCP2 (Protein TEOSINTE BRANCHED 1) (Protein TEOSINTE-LIKE1, CYCLOIDEA, and PROLIFERATING CELL FACTOR 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; leaf development [GO:0048366]; leaf morphogenesis [GO:0009965]; positive regulation of development, heterochronic [GO:0045962]; positive regulation of nucleic acid-templated transcription [GO:1903508]; positive regulation of photomorphogenesis [GO:2000306]; regulation of transcription, DNA-templated [GO:0006355]; response to blue light [GO:0009637]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}. TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. locus:2124539; AT4G18390 transcription factor Os07g0152000 protein Q0D8K4 Q0D8K4_ORYSJ Os07g0152000 Os07g0152000 OsJ_23121 OSNPB_070152000 ENOG411DYEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0651500 protein A0A0P0V608 A0A0P0V608_ORYSJ Os01g0651500 OSNPB_010651500 ENOG411DYEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: iron-sulfur cluster assembly 2 homolog NA NA NA NA NA NA NA ENOG411DYED Q9SRP6,A0A1I9LMH7 Q9SRP6_ARATH,A0A1I9LMH7_ARATH Mitochondrial inner membrane protease ATP23 (EC 3.4.24.-) 3.4.24.- 21798,17315 Mitochondrial inner membrane protease ATP23 (EC 3.4.24.-) metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222] locus:2099664; AT3G03420 Mitochondrial inner membrane protease Mitochondrial inner membrane protease ATP23 (EC 3.4.24.-) Q7XUP4,A0A0P0Y966 Q7XUP4_ORYSJ,A0A0P0Y966_ORYSJ Os04g0482700 OSJNBb0011N17.19 OSNPB_040482700,Os12g0288900 OSNPB_120288900 ENOG411DYEE Q9FXJ1,Q8RXT9,Q94F40,Q9SHP6,Q9ZQI3,Q9FXJ2,Q9C857,A0A1P8AWP0 GDL6_ARATH,GDL8_ARATH,GDL9_ARATH,GDL10_ARATH,GDL40_ARATH,GDL7_ARATH,GDL16_ARATH,A0A1P8AWP0_ARATH GDSL esterase/lipase At1g28570 (EC 3.1.1.-) (Extracellular lipase At1g28570),GDSL esterase/lipase At1g28590 (EC 3.1.1.-) (Extracellular lipase At1g28590),GDSL esterase/lipase At1g28600 (EC 3.1.1.-) (Extracellular lipase At1g28600),GDSL esterase/lipase At1g28610 (EC 3.1.1.-) (Extracellular lipase At1g28610),GDSL esterase/lipase At2g27360 (EC 3.1.1.-) (Extracellular lipase At2g27360),GDSL esterase/lipase At1g28580 (EC 3.1.1.-) (Extracellular lipase At1g28580),GDSL esterase/lipase At1g31550 (EC 3.1.1.-) (Extracellular lipase At1g31550),SGNH hydrolase-type esterase superfamily protein ARA:AT1G28570-MONOMER;,ARA:AT1G28590-MONOMER;,ARA:AT1G28600-MONOMER;,ARA:AT1G28610-MONOMER;,ARA:AT2G27360-MONOMER;,ARA:AT1G28580-MONOMER;,ARA:AT1G31550-MONOMER; 3.1.1.- 43301,44811,43610,42427,43854,43025,43376,25362 GDSL esterase/lipase At1g28570 (EC 3.1.1.-) (Extracellular lipase At1g28570),GDSL esterase/lipase At1g28590 (EC 3.1.1.-) (Extracellular lipase At1g28590),GDSL esterase/lipase At1g28600 (EC 3.1.1.-) (Extracellular lipase At1g28600),GDSL esterase/lipase At1g28610 (EC 3.1.1.-) (Extracellular lipase At1g28610),GDSL esterase/lipase At2g27360 (EC 3.1.1.-) (Extracellular lipase At2g27360),GDSL esterase/lipase At1g28580 (EC 3.1.1.-) (Extracellular lipase At1g28580),GDSL esterase/lipase At1g31550 (EC 3.1.1.-) (Extracellular lipase At1g31550),SGNH hydrolase-type esterase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],cell wall [GO:0005618]; extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2018673;,locus:2018743;,locus:2018753;,locus:2018733;,locus:2038628;,locus:2018758;,locus:2028661; AT1G28570,AT1G28590,AT1G28600,AT1G28610,AT2G27360,AT1G28580,AT1G31550 GDSL esterase lipase NA NA NA NA NA NA NA ENOG411DYEB PNP2 Q9S7G6 PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial (AtmtPNPase) (EC 2.7.7.8) (Polynucleotide phosphorylase 2) (PNPase 2) FUNCTION: Involved in the 3'-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. Functions as a poly(A) mRNA 3'-5' degrading phosphorylase and is required for the degradation of highly expressed transcripts of non-coding regions. {ECO:0000269|PubMed:15037609, ECO:0000269|PubMed:16537927}. MISCELLANEOUS: Plants silencing PNP2 stop growing after two to three weeks. {ECO:0000305|PubMed:15037609}. 2.7.7.8 107772 Polyribonucleotide nucleotidyltransferase 2, mitochondrial (AtmtPNPase) (EC 2.7.7.8) (Polynucleotide phosphorylase 2) (PNPase 2) mitochondrion [GO:0005739]; 3'-5'-exoribonuclease activity [GO:0000175]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723]; mitochondrial RNA catabolic process [GO:0000957]; mitochondrial RNA processing [GO:0000963]; mRNA catabolic process [GO:0006402]; mRNA processing [GO:0006397]; rRNA processing [GO:0006364]; tRNA processing [GO:0008033] locus:2222662; AT5G14580 polyribonucleotide Polyribonucleotide nucleotidyltransferase 2, mitochondrial (EC 2.7.7.8) (Polynucleotide phosphorylase 2) (PNPase 2),Os02g0617700 protein (Fragment) Q6KAI0,A0A0P0VLR3 PNP2_ORYSJ,A0A0P0VLR3_ORYSJ PNP2 Os02g0617700 LOC_Os02g40460 OJ1014_H03.14,Os02g0617700 OSNPB_020617700 FUNCTION: Involved in the 3'-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. Functions as a poly(A) mRNA 3'-5' degrading phosphorylase (By similarity). {ECO:0000250}. ENOG411DYEC DET2 Q38944 DET2_ARATH Steroid 5-alpha-reductase DET2 (AtDET2) (EC 1.3.1.22) (Protein COMPACT ROSETTE 1) (Protein DEETIOLATED 2) DISRUPTION PHENOTYPE: Brassinolide-reversible dark- and light-grown defects; small dark-green dwarf plants with a limited leaves expension due to a reduced number of cells per leaf blade. {ECO:0000269|PubMed:10394910, ECO:0000269|PubMed:11867704, ECO:0000269|PubMed:8602526, ECO:0000269|PubMed:9401120}. Dwarf; Increased branching; Dark green; Small flowers; Reduced fertility; Late flowering; Abnormal senescence; Dark-grown seedlings are de-etiolated-J. Chory-1996 FUNCTION: Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide; acts at the second step in brassinolide biosynthesis in the 5alpha-reduction of (24R)- 24-methylcholest-4-en-3-one, which is further modified to form campestanol. Can use progesterone, testosterone, androstenedione and campestenone as substrate. {ECO:0000269|PubMed:10398719, ECO:0000269|PubMed:11867704, ECO:0000269|PubMed:15993049, ECO:0000269|PubMed:8602526, ECO:0000269|PubMed:9108014, ECO:0000269|PubMed:9401120}. PATHWAY: Plant hormone biosynthesis; brassinosteroid biosynthesis. ARA:AT2G38050-MONOMER;MetaCyc:AT2G38050-MONOMER; R-ATH-193048; Biosynthesis of secondary metabolites (01110),Brassinosteroid biosynthesis (00905),Metabolic pathways (01100),Steroid hormone biosynthesis (00140) 1.3.1.22 30635 Steroid 5-alpha-reductase DET2 (AtDET2) (EC 1.3.1.22) (Protein COMPACT ROSETTE 1) (Protein DEETIOLATED 2) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; 3-oxo-5-alpha-steroid 4-dehydrogenase activity [GO:0003865]; cholestenone 5-alpha-reductase activity [GO:0047751]; progesterone 5-alpha-reductase activity [GO:0050213]; sterol 5-alpha reductase activity [GO:0009917]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; oxidation-reduction process [GO:0055114] locus:2005506; AT2G38050 reductase Os11g0184100 protein,Os01g0851600 protein (Putative steroid 5alpha-reductase) (cDNA clone:J033034K18, full insert sequence) C7J8H0,Q8LQ34 C7J8H0_ORYSJ,Q8LQ34_ORYSJ Os11g0184100 OSNPB_110184100,Os01g0851600 OSNPB_010851600 P0529H11.33 ENOG411DYEA F4IEK8 F4IEK8_ARATH PII, uridylyltransferase (DUF2921) 119959 PII, uridylyltransferase (DUF2921) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; nucleotidyltransferase activity [GO:0016779] locus:2011566; AT1G52780 Protein of unknown function (DUF2921) Os01g0176800 protein,Os02g0688100 protein,Os05g0273650 protein Q5VRW0,A0A0P0VN46,A0A0P0WK48 Q5VRW0_ORYSJ,A0A0P0VN46_ORYSJ,A0A0P0WK48_ORYSJ Os01g0176800 Os01g0176800 OSNPB_010176800 P0013F10.19,Os02g0688100 OSNPB_020688100,Os05g0273650 OSNPB_050273650 ENOG411DYEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF814) Os01g0750500 protein (cDNA clone:001-038-C01, full insert sequence) (cDNA clone:006-307-A10, full insert sequence) (cDNA clone:J013112J21, full insert sequence) Q943H0 Q943H0_ORYSJ Os01g0750500 Os01g0750500 OsJ_03465 OSNPB_010750500 P0046E05.12 ENOG411DYEM MNF13.27,MDC12.25 Q9FM27,Q8VZP2,A0A1P8BER0 Q9FM27_ARATH,Q8VZP2_ARATH,A0A1P8BER0_ARATH At5g40710 (Zinc finger (C2H2 type) family protein),C2H2-like zinc finger protein (Uncharacterized protein At5g63280) (Zinc finger-like protein),Zinc finger (C2H2 type) family protein 31893,31282,27784 At5g40710 (Zinc finger (C2H2 type) family protein),C2H2-like zinc finger protein (Uncharacterized protein At5g63280) (Zinc finger-like protein),Zinc finger (C2H2 type) family protein integral component of membrane [GO:0016021]; nucleic acid binding [GO:0003676],integral component of membrane [GO:0016021]; sequence-specific DNA binding [GO:0043565] locus:2168783;,locus:2162012; AT5G40710,AT5G63280 zinc finger Os12g0233400 protein (Zinc finger family protein, putative, expressed) (cDNA clone:J023023L10, full insert sequence) Q2QVE1 Q2QVE1_ORYSJ Os12g0233400 LOC_Os12g13130 Os12g0233400 OSNPB_120233400 ENOG411DYEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain Glycosyl hydrolase family 3 N terminal domain containing protein, expressed (Os03g0749100 protein) (Unnamed protein product) (cDNA clone:J023133K21, full insert sequence) Q10CV2 Q10CV2_ORYSJ OSJNBa0069E14.6 LOC_Os03g53790 Os03g0749100 OSNPB_030749100 ENOG411DYEK HVA22A Q9S7V4 HA22A_ARATH HVA22-like protein a (AtHVA22a) 20679 HVA22-like protein a (AtHVA22a) integral component of membrane [GO:0016021]; hyperosmotic salinity response [GO:0042538]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Predominantly expressed in flower buds and stem. {ECO:0000269|PubMed:12081371}. locus:2019225; AT1G74520 HVA22-like protein NA NA NA NA NA NA NA ENOG411DYEH GNT2 Q9FT88 MGAT2_ARATH Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.143) (Beta-1,2-N-acetylglucosaminyltransferase II) (GlcNAc-T II) (GNT-II) (Mannoside acetylglucosaminyltransferase 2) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II) FUNCTION: Catalyzes an essential step in the conversion of oligo-mannose and hybrid to complex N-glycans. {ECO:0000269|PubMed:11229321}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000269|PubMed:11229321}. R-ATH-975578; 2.4.1.143 48947 Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.143) (Beta-1,2-N-acetylglucosaminyltransferase II) (GlcNAc-T II) (GNT-II) (Mannoside acetylglucosaminyltransferase 2) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II) Golgi membrane [GO:0000139]; Golgi stack [GO:0005795]; integral component of membrane [GO:0016021]; alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity [GO:0008455]; oligosaccharide biosynthetic process [GO:0009312]; protein glycosylation [GO:0006486] locus:2051279; AT2G05320 N-acetylglucosaminyltransferase II (MGAT2) Os02g0798100 protein (Putative beta-1,2-N-acetylglucosaminyltransferase II) Q69QZ8 Q69QZ8_ORYSJ Os02g0798100 OJ1695_D07.5 OsJ_08734 OSNPB_020798100 ENOG411DYEI ROPGEF14 Q56WM6,A0A1P8AP33 ROGFE_ARATH,A0A1P8AP33_ARATH Rop guanine nucleotide exchange factor 14 (AtRopGEF14) (Rho of plants guanine nucleotide exchange factor 14),RHO guanyl-nucleotide exchange factor 14 FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. {ECO:0000250}. 64434,60953 Rop guanine nucleotide exchange factor 14 (AtRopGEF14) (Rho of plants guanine nucleotide exchange factor 14),RHO guanyl-nucleotide exchange factor 14 plasma membrane [GO:0005886]; Rho guanyl-nucleotide exchange factor activity [GO:0005089]; regulation of pollen tube growth [GO:0080092],Rho guanyl-nucleotide exchange factor activity [GO:0005089] TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000269|PubMed:16415208}. locus:2028701; AT1G31650 Guanine nucleotide exchange factor Os02g0702600 protein (cDNA clone:J033097A05, full insert sequence) (cDNA clone:J033115I05, full insert sequence),Os02g0702600 protein (Fragment) Q6YVK1,A0A0P0VNG2 Q6YVK1_ORYSJ,A0A0P0VNG2_ORYSJ Os02g0702600 OJ1218_D07.16 OSNPB_020702600 P0724B10.5,Os02g0702600 OSNPB_020702600 ENOG411E2YW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E2YE LTD Q8VY88 LTD_ARATH Protein LHCP TRANSLOCATION DEFECT (Protein GRANA-DEFICIENT CHLOROPLAST 1) DISRUPTION PHENOTYPE: Not able to grow photoautotrophically in soil. Pale green, slow growth and no bolting. No appressed grana in chloroplasts. {ECO:0000269|PubMed:21098677, ECO:0000269|PubMed:21505433}. grow much slower than the wild type and growth ceases at the vegetative growth stage before bolting. grana deficient. decreased chlorophyll content. accumulated very low amounts of LHCII trimer. Seedling lethal-Z. Yang-2011 FUNCTION: Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway. {ECO:0000269|PubMed:21098677, ECO:0000269|PubMed:21505433}. 19190 Protein LHCP TRANSLOCATION DEFECT (Protein GRANA-DEFICIENT CHLOROPLAST 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; granum assembly [GO:0090391]; intracellular protein transport [GO:0006886]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Highly expressed in leaves and seedlings. Detected in roots, but not in germinating seeds. {ECO:0000269|PubMed:21098677}. locus:2036421; AT1G50900 Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway Protein LHCP TRANSLOCATION DEFECT,Os07g0520800 protein (Fragment) A3BKF2,A0A0P0X6M7 LTD_ORYSJ,A0A0P0X6M7_ORYSJ LTD Os07g0520800 LOC_Os07g33660 OJ1657_A07.104 OJ1793_E11.12 OsJ_24479,Os07g0520800 OSNPB_070520800 FUNCTION: Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway. {ECO:0000250}. ENOG411E2Y1 Q8VYV3,Q8S8M7,A0A1P8B256 Q8VYV3_ARATH,Q8S8M7_ARATH,A0A1P8B256_ARATH At1g31940/F5M6.6 (Cystic fibrosis transmembrane conductance regulator),At2g35585 (Cystic fibrosis transmembrane conductance regulator) (Expressed protein),Cystic fibrosis transmembrane conductance regulator 17121,17177,15141 At1g31940/F5M6.6 (Cystic fibrosis transmembrane conductance regulator),At2g35585 (Cystic fibrosis transmembrane conductance regulator) (Expressed protein),Cystic fibrosis transmembrane conductance regulator integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2034441;,locus:505006293; AT1G31940,AT2G35585 NA Os02g0697700 protein (cDNA clone:J013038N05, full insert sequence) Q6Z8F6 Q6Z8F6_ORYSJ Os02g0697700 Os02g0697700 OsJ_08030 OSNPB_020697700 P0459B01.8 ENOG411E0DQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OTU domain-containing protein At3g57810-like Os01g0900900 protein Q0JGV7 Q0JGV7_ORYSJ Os01g0900900 Os01g0900900 OSNPB_010900900 ENOG411E0DT PEX14 Q9FXT6 PEX14_ARATH Peroxisomal membrane protein PEX14 (Peroxin-14) (AtPEX14) (Peroxisome biogenesis protein 14) (Pex14p) (Protein PEROXISOME DEFECTIVE 2) Seedling lethal without exogenous sucrose; Insensitive to 2,4-DB-M. Nishimura-2000 FUNCTION: Controls intracellular transport of both PTS1- and PTS2-containing proteins. Required for the proper targeting of PEX7 to the peroxisome. {ECO:0000269|PubMed:11060021, ECO:0000269|PubMed:11978862, ECO:0000269|PubMed:17478547, ECO:0000269|PubMed:19594707}. 55595 Peroxisomal membrane protein PEX14 (Peroxin-14) (AtPEX14) (Peroxisome biogenesis protein 14) (Pex14p) (Protein PEROXISOME DEFECTIVE 2) cytosol [GO:0005829]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; peroxisomal importomer complex [GO:1990429]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; plasma membrane [GO:0005886]; protein transporter activity [GO:0008565]; receptor binding [GO:0005102]; peroxisome organization [GO:0007031]; protein import into peroxisome matrix, docking [GO:0016560]; protein targeting to peroxisome [GO:0006625] DEVELOPMENTAL STAGE: Expressed at the early stage of germination and during the conversion of glyoxysomes to peroxisomes. {ECO:0000269|PubMed:11978862}. TISSUE SPECIFICITY: Expressed in flowers, siliques, leaves and roots. {ECO:0000269|PubMed:11978862}. locus:2170688; AT5G62810 peroxisomal membrane protein PEX14-like Os05g0101200 protein (Peroxisomal membrane protein OsPex14p) (Putative peroxisomal membrane protein OsPex14p) (cDNA clone:001-043-F11, full insert sequence) Q9FW35 Q9FW35_ORYSJ Os05g0101200 OSJNBb0098I11.8 OSNPB_050101200 P0036D10.7 ENOG411E0DZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat ERECTA-like kinase 1-like (Os01g0891700 protein),Os01g0891500 protein (Os01g0891601 protein),Os01g0892300 protein (cDNA, clone: J065203A13, full insert sequence) Q8S0M3,Q0JH08,Q0JH05 Q8S0M3_ORYSJ,Q0JH08_ORYSJ,Q0JH05_ORYSJ Os01g0891700 B1078G07.10 OsJ_04373 OSNPB_010891700,Os01g0891601 Os01g0891500 OSNPB_010891601,Os01g0892300 Os01g0892300 OsJ_04375 OSNPB_010892300 ENOG411E0DY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411E0DI BIR2 Q9LSI9 BIR2_ARATH Inactive LRR receptor-like serine/threonine-protein kinase BIR2 (Protein BAK1-INTERACTING RECEPTOR-LIKE KINASE 2) DISRUPTION PHENOTYPE: Increased cell death spreading after Alternaria brassicicola infection, and enhanced salicylic acid (SA) responses and resistance to the biotrophic bacterial pathogen Pseudomonas syringae pv. tomato DC3000. Impact on several BAK1-regulated processes, such as hyperresponsiveness to pathogen-associated molecular patterns (PAMP), enhanced cell death, and resistance to bacterial pathogens, but normal brassinosteroid-(BR-)regulated growth. {ECO:0000269|PubMed:24388849}. FUNCTION: Pseudokinases lacking protein kinase activity and unable to bind ATP-analogs (PubMed:24556575). Negative regulator of pathogen-associated molecular patterns- (PAMP-) triggered immunity by limiting BAK1-receptor complex formation in the absence of ligands (PubMed:24388849). {ECO:0000269|PubMed:24388849, ECO:0000269|PubMed:24556575}. 66945 Inactive LRR receptor-like serine/threonine-protein kinase BIR2 (Protein BAK1-INTERACTING RECEPTOR-LIKE KINASE 2) chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; nucleotide binding [GO:0000166]; defense response [GO:0006952]; negative regulation of defense response to bacterium [GO:1900425]; protein phosphorylation [GO:0006468]; regulation of defense response to fungus [GO:1900150] locus:2088937; AT3G28450 Inactive receptor kinase Os05g0399800 protein (cDNA, clone: J075174K02, full insert sequence),OJ991113_30.7 protein (Os04g0487200 protein) B7F9D3,Q7XUF9 B7F9D3_ORYSJ,Q7XUF9_ORYSJ Os05g0399800 OsJ_18470 OSNPB_050399800,Os04g0487200 OJ991113_30.7 OSNPB_040487200 ENOG411E489 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others Os01g0555100 protein (Putative zinc finger transcription factor ZFP30) (cDNA clone:002-180-E06, full insert sequence) Q8RYZ5 Q8RYZ5_ORYSJ Os01g0555100 B1110C07.45 OSNPB_010555100 ENOG411E488 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os03g0335200 protein (Fragment) Q0DS41 Q0DS41_ORYSJ Os03g0335200 OSNPB_030335200 ENOG411E483 ATJ8 Q9SAG8 DNAJ8_ARATH Chaperone protein dnaJ 8, chloroplastic (AtDjC8) (AtJ8) FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 18325 Chaperone protein dnaJ 8, chloroplastic (AtDjC8) (AtJ8) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; nucleus [GO:0005634]; response to light stimulus [GO:0009416] locus:2025792; AT1G80920 Chaperone protein dnaJ 8 Os06g0650900 protein Q67UQ4,A0A0P0WZS0 Q67UQ4_ORYSJ,A0A0P0WZS0_ORYSJ P0453H04.34-1 Os06g0650900 OSNPB_060650900,Os06g0650900 OSNPB_060650900 ENOG411E482 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E481 Q9LTX8 Q9LTX8_ARATH At5g49920 (Octicosapeptide/Phox/Bem1p family protein) 32488 At5g49920 (Octicosapeptide/Phox/Bem1p family protein) locus:2158839; AT5G49920 PB1 NA NA NA NA NA NA NA ENOG411E480 BHLH147 Q9LSN7 BH147_ARATH Transcription factor bHLH147 (ATBS1 interacting factor 3) (Basic helix-loop-helix protein 147) (AtbHLH147) (bHLH 147) (Transcription factor EN 142) (bHLH transcription factor bHLH147) FUNCTION: Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269|PubMed:20023194}. 25311 Transcription factor bHLH147 (ATBS1 interacting factor 3) (Basic helix-loop-helix protein 147) (AtbHLH147) (bHLH 147) (Transcription factor EN 142) (bHLH transcription factor bHLH147) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2086117; AT3G17100 Transcription factor NA NA NA NA NA NA NA ENOG411E487 HIPP02 Q8GWS3,Q8GXF7 HIP2_ARATH,Q8GXF7_ARATH Heavy metal-associated isoprenylated plant protein 2 (AtHIP02),Ubiquitin carboxyl-terminal hydrolase-like protein (Uncharacterized protein At5g26718) (Uncharacterized protein At5g26720/F21E10_105) FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 12600,15547 Heavy metal-associated isoprenylated plant protein 2 (AtHIP02),Ubiquitin carboxyl-terminal hydrolase-like protein (Uncharacterized protein At5g26718) (Uncharacterized protein At5g26720/F21E10_105) cytoplasm [GO:0005737]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001],hydrolase activity [GO:0016787]; pollen tube growth [GO:0009860] locus:2146834;,locus:2146779; AT5G26690,AT5G26720 Heavy-metal-associated domain-containing protein Os04g0661100 protein A3AYA2 A3AYA2_ORYSJ Os04g0661100 OsJ_16497 OSNPB_040661100 ENOG411E486 Q9LV43,Q9LV42 Q9LV43_ARATH,Q9LV42_ARATH Late embryogenesis abundant protein, group 2 33465,32716 Late embryogenesis abundant protein, group 2 integral component of membrane [GO:0016021] locus:2091727; AT3G24600 Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411E485 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os07g0206800 protein A0A0N7KN40 A0A0N7KN40_ORYSJ Os07g0206800 OSNPB_070206800 ENOG411E484 ACO2 Q94A28 ACO2M_ARATH Aconitate hydratase 2, mitochondrial (Aconitase 2) (mACO2) (EC 4.2.1.3) (Citrate hydro-lyase 2) DISRUPTION PHENOTYPE: Reduced mitochondrial aconitase (ACO) activity by 20 percent (PubMed:17013749, PubMed:17437406). Increased tolerance to oxidative stress mediated by paraquat, a superoxide-generating agent (PubMed:17013749). Altered acetate assimilation leading to lower levels of CO(2), CHO and SO, and higher OAs (organic acids) accumulation, especially fumarate (PubMed:25061985). {ECO:0000269|PubMed:17013749, ECO:0000269|PubMed:17437406, ECO:0000269|PubMed:25061985}. FUNCTION: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. Contributes to oxidative stress tolerance (PubMed:17013749). Involved in acetate assimilation (PubMed:25061985). {ECO:0000269|PubMed:17013749, ECO:0000269|PubMed:25061985}. PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 2/2. {ECO:0000250|UniProtKB:P19414}. R-ATH-917937; 4.2.1.3 108481 Aconitate hydratase 2, mitochondrial (Aconitase 2) (mACO2) (EC 4.2.1.3) (Citrate hydro-lyase 2) chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; 4 iron, 4 sulfur cluster binding [GO:0051539]; aconitate hydratase activity [GO:0003994]; copper ion binding [GO:0005507]; citrate metabolic process [GO:0006101]; glyoxylate cycle [GO:0006097]; isocitrate metabolic process [GO:0006102]; response to cadmium ion [GO:0046686]; response to iron ion starvation [GO:1990641]; response to oxidative stress [GO:0006979]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Mostly expressed in roots, leaves and flowers, also present in stems, and, at low levels, in seeds. {ECO:0000269|PubMed:17437406}. locus:2116297; AT4G26970 Aconitase C-terminal domain NA NA NA NA NA NA NA ENOG411E48K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF740) Os11g0707900 protein (Fragment) Q0IQU2,A0A0P0Y5R0 Q0IQU2_ORYSJ,A0A0P0Y5R0_ORYSJ Os11g0707900 Os11g0707900 OSNPB_110707900,Os11g0707900 OSNPB_110707900 ENOG411E48J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family Os10g0437500 protein (Universal stress protein family protein, expressed) (cDNA clone:002-124-E04, full insert sequence) Q7XE49 Q7XE49_ORYSJ Os10g0437500 LOC_Os10g30150 Os10g0437500 OsJ_31643 OSNPB_100437500 ENOG411E48I Q9C9B5 Q9C9B5_ARATH At1g73940/F2P9_19 (Tumor necrosis factor receptor family protein) (Uncharacterized protein F2P9.19) 17082 At1g73940/F2P9_19 (Tumor necrosis factor receptor family protein) (Uncharacterized protein F2P9.19) locus:2031481; AT1G73940 NA Expressed protein (Os03g0852500 protein) (cDNA clone:J023001G15, full insert sequence) Q851X4 Q851X4_ORYSJ Os03g0852500 LOC_Os03g63550 OSJNBa0015N08.27 OSNPB_030852500 ENOG411E48N CRF2 Q9SUQ2 CRF2_ARATH Ethylene-responsive transcription factor CRF2 (Protein CYTOKININ RESPONSE FACTOR 2) FUNCTION: Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. 37873 Ethylene-responsive transcription factor CRF2 (Protein CYTOKININ RESPONSE FACTOR 2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; identical protein binding [GO:0042802]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; cytokinin-activated signaling pathway [GO:0009736]; ethylene-activated signaling pathway [GO:0009873]; root development [GO:0048364]; transcription factor import into nucleus [GO:0042991]; transcription, DNA-templated [GO:0006351] locus:2128429; AT4G23750 Transcription factor NA NA NA NA NA NA NA ENOG411E48M O80667 O80667_ARATH Expressed protein (Transmembrane protein) 17858 Expressed protein (Transmembrane protein) integral component of membrane [GO:0016021] locus:2063240; AT2G41200 NA Os05g0386900 protein (cDNA clone:001-025-H06, full insert sequence) Q60E67 Q60E67_ORYSJ Os05g0386900 OsJ_18395 OSJNBa0073E05.9 OSNPB_050386900 ENOG411E48C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Bromodomain PHD finger transcription factor Os11g0148800 protein A0A0P0XYU8 A0A0P0XYU8_ORYSJ Os11g0148800 OSNPB_110148800 ENOG411E48B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0264700 protein (Fragment),Os10g0494950 protein Q0E279,A0A0P0XW60 Q0E279_ORYSJ,A0A0P0XW60_ORYSJ Os02g0264700 Os02g0264700 OSNPB_020264700,Os10g0494950 OSNPB_100494950 ENOG411E48A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3245) Os08g0559700 protein A0A0N7KQA7 A0A0N7KQA7_ORYSJ Os08g0559700 OSNPB_080559700 ENOG411E48G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E48F F4IB51,F4KCY3 F4IB51_ARATH,F4KCY3_ARATH HAT transposon superfamily protein 33620,49119 HAT transposon superfamily protein nucleic acid binding [GO:0003676],nucleic acid binding [GO:0003676]; protein dimerization activity [GO:0046983] locus:2018655;,locus:504955173; AT1G43260,AT5G31412 Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411E48E T20N10_240 Q9LXS0,Q93ZX6,Q9LXR1,Q2V3N5,Q9M8U4,O23257,Q3E8L4,Q9SSR7,Q3E8L5,Q3EAR3,Q9LXQ7,Q9LXR4,Q8GXW6,Q9LXR6,Q9LXQ8,Q9FF23,Q9LDJ9,Q8GYA8,A0A1I9LNJ8,A0A1P8B3Y7,A0A1P8ARQ2,Q9LXR3,A0A1P8BGP4,A0A1P8B401,A0A1P8ARS0,A0A1P8BBT1,A8MS17,A0A1I9LNU1,F4J721 FB206_ARATH,FBL57_ARATH,FB208_ARATH,FB211_ARATH,FBL41_ARATH,FBL72_ARATH,FBL86_ARATH,FBL31_ARATH,FBL85_ARATH,FB192_ARATH,FB209_ARATH,FBL56_ARATH,FBL59_ARATH,FB207_ARATH,FBL60_ARATH,FB268_ARATH,FB133_ARATH,Y3975_ARATH,A0A1I9LNJ8_ARATH,A0A1P8B3Y7_ARATH,A0A1P8ARQ2_ARATH,Q9LXR3_ARATH,A0A1P8BGP4_ARATH,A0A1P8B401_ARATH,A0A1P8ARS0_ARATH,A0A1P8BBT1_ARATH,A8MS17_ARATH,A0A1I9LNU1_ARATH,F4J721_ARATH Putative F-box protein At3g58820,F-box/LRR-repeat protein At3g58900,Putative F-box protein At3g58910,F-box protein At3g59000,F-box/LRR-repeat protein At3g03030,Putative F-box/LRR-repeat protein At4g13960,F-box/LRR-repeat protein At5g38396,F-box/LRR-repeat protein At1g52650,Putative F-box/LRR-repeat protein At5g38386,Putative F-box protein At3g42722,Putative F-box protein At3g58950,Putative F-box/LRR-repeat protein At3g58880,F-box/LRR-repeat protein At3g58930,Putative F-box protein At3g58860,F-box/LRR-repeat protein At3g58940,Putative F-box protein At5g38390,F-box protein At3g03040,FBD domain-containing protein At3g58975,F-box/RNI-like superfamily protein,RNI-like superfamily protein (Uncharacterized protein T20N10_240),F-box/RNI superfamily protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 47335,37470,23845,55726,54395,49477,52750,53159,46539,15042,48055,50764,55194,52494,70848,52177,54057,24808,51208,44938,40035,33137,20021,53043,34138,24707,35901,38030,53417 Putative F-box protein At3g58820,F-box/LRR-repeat protein At3g58900,Putative F-box protein At3g58910,F-box protein At3g59000,F-box/LRR-repeat protein At3g03030,Putative F-box/LRR-repeat protein At4g13960,F-box/LRR-repeat protein At5g38396,F-box/LRR-repeat protein At1g52650,Putative F-box/LRR-repeat protein At5g38386,Putative F-box protein At3g42722,Putative F-box protein At3g58950,Putative F-box/LRR-repeat protein At3g58880,F-box/LRR-repeat protein At3g58930,Putative F-box protein At3g58860,F-box/LRR-repeat protein At3g58940,Putative F-box protein At5g38390,F-box protein At3g03040,FBD domain-containing protein At3g58975,F-box/RNI-like superfamily protein,RNI-like superfamily protein (Uncharacterized protein T20N10_240),F-box/RNI superfamily protein nucleus [GO:0005634]; protein ubiquitination [GO:0016567],anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2099094;,locus:2099099;,locus:2077695;,locus:2075407;,locus:2129266;,locus:504954836;,locus:504954830;,locus:2099034;,locus:2099054;,locus:2099119;,locus:2099019;,locus:2099124;,locus:2177396;,locus:2075372;,locus:2099064;,locus:2099084; AT3G58820,AT3G58900,AT3G58910,AT3G59000,AT3G03030,AT4G13960,AT5G38396,AT1G52650,AT5G38386,AT3G42722,AT3G58950,AT3G58880,AT3G58930,AT3G58860,AT3G58940,AT5G38390,AT3G03040,AT3G58975,AT3G58890 F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411E48D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os05g0163900 protein (cDNA clone:002-168-H12, full insert sequence),Os01g0159800 protein Q75IR0,A0A0P0UYC0 Q75IR0_ORYSJ,A0A0P0UYC0_ORYSJ Os05g0163900 OSJNBa0027N19.3 OSJNBb0099P06.13 OSNPB_050163900,Os01g0159800 OSNPB_010159800 ENOG411E48Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: membrane-anchored ubiquitin-fold protein Membrane-anchored ubiquitin-fold protein 3 (Membrane-anchored ub-fold protein 3) (OsMUB3) Q6Z8K4 MUB3_ORYSJ MUB3 Os02g0750600 LOC_Os02g51500 OsJ_08399 P0431B06.16 FUNCTION: May serve as docking site to facilitate the association of other proteins to the plasma membrane. {ECO:0000250|UniProtKB:Q9SH14}. ENOG411E48Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alba Os02g0202500 protein (Fragment),Os06g0602600 protein (cDNA clone:J033044O03, full insert sequence) Q0E2Z3,Q69XJ9 Q0E2Z3_ORYSJ,Q69XJ9_ORYSJ Os02g0202500 Os02g0202500 OSNPB_020202500,Os06g0602600 OsJ_21893 OSNPB_060602600 P0486H12.21 ENOG411E48X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NmrA-like family NA NA NA NA NA NA NA ENOG411E48S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NAC4 protein (Os08g0535800 protein) (Putative development regulation gene OsNAC4) (cDNA clone:001-038-H11, full insert sequence) (cDNA clone:006-311-A02, full insert sequence) (cDNA clone:J013160K11, full insert sequence) Q6Z1G9 Q6Z1G9_ORYSJ Os08g0535800 Os08g0535800 OsJ_28085 OSJNBa0033D24.25 OSNPB_080535800 P0665C04.6 ENOG411E48R Q9FJJ1 Q9FJJ1_ARATH Microtubule-associated futsch-like protein (Uncharacterized protein At5g62550) 53425 Microtubule-associated futsch-like protein (Uncharacterized protein At5g62550) plasma membrane [GO:0005886] locus:2154114; AT5G62550 NA Os06g0589500 protein (cDNA clone:J033030G15, full insert sequence) Q69X98 Q69X98_ORYSJ Os06g0589500 Os06g0589500 OSNPB_060589500 P0633E08.7 ENOG411E48Q Q9FT50 FB202_ARATH Putative F-box protein At3g52320 45215 Putative F-box protein At3g52320 locus:2100524; AT3G52320 FBOX NA NA NA NA NA NA NA ENOG411E48P TRM10,TRM11 Q9T0E5,F4JMR2,F4JMR3 Q9T0E5_ARATH,F4JMR2_ARATH,F4JMR3_ARATH GAR2-like protein (Uncharacterized protein AT4g11780),Uncharacterized protein 53649,49081,52247 GAR2-like protein (Uncharacterized protein AT4g11780),Uncharacterized protein locus:2139737;,locus:2127178; AT4G11780,AT4G23020 NA NA NA NA NA NA NA NA ENOG411E48W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA (RAP Annotation release2) Conserved hypothetical protein (Os03g0145700 protein),Os04g0642300 protein Q0DV73,A0A0P0WFH9 Q0DV73_ORYSJ,A0A0P0WFH9_ORYSJ Os03g0145700 Os03g0145700 OSNPB_030145700,Os04g0642300 OSNPB_040642300 ENOG411E48V Q8LDL9,A0A1P8API1,F4HZV2,F4HZV4,F4HZV3 Q8LDL9_ARATH,A0A1P8API1_ARATH,F4HZV2_ARATH,F4HZV4_ARATH,F4HZV3_ARATH 50S ribosomal protein L34 (Uncharacterized protein At1g29040),50S ribosomal protein L34 21439,20419,19122,17501,19839 50S ribosomal protein L34 (Uncharacterized protein At1g29040),50S ribosomal protein L34 chloroplast [GO:0009507]; ribosome [GO:0005840]; vacuole [GO:0005773],ribosome [GO:0005840] locus:2029964; AT1G29040 Conserved hypothetical protein (Lin0512_fam) Os01g0613300 protein (cDNA clone:001-104-F05, full insert sequence) Q0JLA3 Q0JLA3_ORYSJ Os01g0613300 Os01g0613300 OSNPB_010613300 ENOG411E48U MYB121 Q9LRU5 Q9LRU5_ARATH MYB transcription factor (MYB-related transcription factor-like protein) (Myb domain protein 121) (Putative transcription factor MYB121) 31370 MYB transcription factor (MYB-related transcription factor-like protein) (Myb domain protein 121) (Putative transcription factor MYB121) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737] locus:2089812; AT3G30210 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E48T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 Os08g0441900 protein A0A0P0XG62 A0A0P0XG62_ORYSJ Os08g0441900 OSNPB_080441900 ENOG411E01S Q66GK1 Q66GK1_ARATH At3g26990 (ENTH/VHS family protein) 56462 At3g26990 (ENTH/VHS family protein) locus:2091990; AT3G26990 Inherit from KOG: Regulation of nuclear pre-mRNA domain containing Os01g0925000 protein (Pherophorin-dz1 protein-like) (cDNA clone:J033143H08, full insert sequence) Q5JKG7 Q5JKG7_ORYSJ Os01g0925000 Os01g0925000 B1033B05.22 OSNPB_010925000 ENOG411E01V DOX2,ALPHA DOX2 Q9C9U3,A0A1P8AUY0,A0A1P8AV22 DOX2_ARATH,A0A1P8AUY0_ARATH,A0A1P8AV22_ARATH Alpha-dioxygenase 2 (Alpha DOX2) (EC 1.14.99.-) (Fatty acid dioxygenase AlphaDOX2),Alpha dioxygenase FUNCTION: Alpha-dioxygenase that catalyzes the primary oxygenation of fatty acids into oxylipins. May be involved in the senescence process. {ECO:0000269|PubMed:19759339}. 1.14.99.- 72458,59984,54940 Alpha-dioxygenase 2 (Alpha DOX2) (EC 1.14.99.-) (Fatty acid dioxygenase AlphaDOX2),Alpha dioxygenase dioxygenase activity [GO:0051213]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; fatty acid metabolic process [GO:0006631]; leaf senescence [GO:0010150]; long-chain fatty acid metabolic process [GO:0001676]; oxylipin biosynthetic process [GO:0031408]; response to oxidative stress [GO:0006979],dioxygenase activity [GO:0051213]; heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] DEVELOPMENTAL STAGE: Accumulates progressively during senescence induced by detachment of leaves. In flowers, expressed in anthers and ovules prior to fertilization, and in siliques, present in developing seeds. {ECO:0000269|PubMed:19759339}. TISSUE SPECIFICITY: Expressed in seedlings (cotyledons, young leaves, and hypocotyls), flowers, siliques and old leaves. {ECO:0000269|PubMed:17369372, ECO:0000269|PubMed:19759339}. locus:2027799; AT1G73680 alpha-dioxygenase NA NA NA NA NA NA NA ENOG411EF08 SRS3 Q9SJT8,A0A1P8AZ48,A0A1P8AZ09,A0A1P8AZ68 SRS3_ARATH,A0A1P8AZ48_ARATH,A0A1P8AZ09_ARATH,A0A1P8AZ68_ARATH Protein SHI RELATED SEQUENCE 3,SHI-related sequence3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16740146}. FUNCTION: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. 19814,19945,21579,21447 Protein SHI RELATED SEQUENCE 3,SHI-related sequence3 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; multicellular organism development [GO:0007275] locus:2050074; AT2G21400 Domain of unknown function (DUF702) NA NA NA NA NA NA NA ENOG411E012 MLF18.50 F4K5U7,A0A1P8BBG0,B3H776 F4K5U7_ARATH,A0A1P8BBG0_ARATH,B3H776_ARATH Disease resistance protein (TIR-NBS-LRR class) family 135730,128450,136032 Disease resistance protein (TIR-NBS-LRR class) family integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952]; signal transduction [GO:0007165] locus:2167457; AT5G36930 resistance protein NA NA NA NA NA NA NA ENOG411E013 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycerophosphoryl diester phosphodiesterase family Os02g0514500 protein (Fragment),Os04g0394100 protein A0A0P0VJM6,A0A0P0W9Q9 A0A0P0VJM6_ORYSJ,A0A0P0W9Q9_ORYSJ Os02g0514500 OSNPB_020514500,Os04g0394100 OSNPB_040394100 ENOG411E014 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q7XSV1 Q7XSV1_ORYSJ prx60 Os04g0688200 OsJ_16716 OSJNBa0039K24.5 OSNPB_040688200 ENOG411E016 Q8RWH8 NIPA9_ARATH Probable magnesium transporter NIPA9 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). {ECO:0000250}. 37388 Probable magnesium transporter NIPA9 early endosome [GO:0005769]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095]; magnesium ion transport [GO:0015693] locus:2143044; AT5G11960 Pfam:DUF803 Probable magnesium transporter (Fragment),Probable magnesium transporter A0A0P0V7A0,A0A0P0V7B2 A0A0P0V7A0_ORYSJ,A0A0P0V7B2_ORYSJ Os01g0708300 OSNPB_010708300 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. ENOG411ECFH PIP5K11,PIPK10 Q9M149,A0A1P8B6V4 PI5KB_ARATH,A0A1P8B6V4_ARATH Putative phosphatidylinositol 4-phosphate 5-kinase 11 (AtPIP5K11) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 11) (Diphosphoinositide kinase 11) (PtdIns(4)P-5-kinase 11),Phosphatidylinositol phosphate kinase 10 Pollen tube growth sensitive to latrunculin B (inhibitor of actin polymerization)-I. Heilmann-2011 ARA:AT4G01190-MONOMER; R-ATH-1660499;R-ATH-6811558;R-ATH-8856828; 2.7.1.68 45659,46792 Putative phosphatidylinositol 4-phosphate 5-kinase 11 (AtPIP5K11) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 11) (Diphosphoinositide kinase 11) (PtdIns(4)P-5-kinase 11),Phosphatidylinositol phosphate kinase 10 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524],ATP binding [GO:0005524]; phosphatidylinositol phosphate kinase activity [GO:0016307] locus:2125098; AT4G01190 PIPKc NA NA NA NA NA NA NA ENOG411ECFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphotransferase enzyme family NA NA NA NA NA NA NA ENOG411ECFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcineurin-like phosphoesterase NA NA NA NA NA NA NA ENOG411ECFC Q9C5E6,O80991,Q3E7F0 Q9C5E6_ARATH,O80991_ARATH,Q3E7F0_ARATH Uncharacterized protein At1g15430,Uncharacterized protein At2g26050,Uncharacterized protein 30103,25449,29159 Uncharacterized protein At1g15430,Uncharacterized protein At2g26050,Uncharacterized protein locus:2037778;,locus:2057396;,locus:2016219; AT1G15430,AT2G26050,AT1G80220 Protein of unknown function (DUF1644) NA NA NA NA NA NA NA ENOG411ECFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411ECFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAE1/Type III polyketide synthase-like protein NA NA NA NA NA NA NA ENOG411ECFE PERK11 Q9SGY7 PEK11_ARATH Putative proline-rich receptor-like protein kinase PERK11 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 11) (AtPERK11) 2.7.11.1 77549 Putative proline-rich receptor-like protein kinase PERK11 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 11) (AtPERK11) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Mostly expressed in flower buds. {ECO:0000269|PubMed:15653807}. locus:2019938; AT1G10620 STYKc NA NA NA NA NA NA NA ENOG411ECFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411ECFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Universal stress protein family NA NA NA NA NA NA NA ENOG411ECFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECFW embryo defective 1353 F4JPI4 F4JPI4_ARATH Golgin family A protein 44815 Golgin family A protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2126470; AT4G30090 NA NA NA NA NA NA NA NA ENOG411ECFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP NA NA NA NA NA NA NA ENOG411ECF2 BEH1 Q9S7F3 BEH1_ARATH BES1/BZR1 homolog protein 1 30112 BES1/BZR1 homolog protein 1 vacuole [GO:0005773]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; brassinosteroid mediated signaling pathway [GO:0009742]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2101719; AT3G50750 Plant protein of unknown function (DUF822) NA NA NA NA NA NA NA ENOG411ECF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: amino acid transporter Os03g0374800 protein,Os03g0375300 protein (Fragment) A0A0P0VXV4,A0A0N7KHC1 A0A0P0VXV4_ORYSJ,A0A0N7KHC1_ORYSJ Os03g0374800 OSNPB_030374800,Os03g0375300 OSNPB_030375300 ENOG411ECF4 ACD6 Q8LPS2,Q9M109,Q9ZT73,Q94A85,A0A1P8B6C4,Q9ZT72,A0A1P8B809,A0A1P8B825,A0A1P8B807,A0A1P8B382,A0A1P8B6T3,F4JG86,F4JVF4 ACD6_ARATH,Q9M109_ARATH,Q9ZT73_ARATH,Q94A85_ARATH,A0A1P8B6C4_ARATH,Q9ZT72_ARATH,A0A1P8B809_ARATH,A0A1P8B825_ARATH,A0A1P8B807_ARATH,A0A1P8B382_ARATH,A0A1P8B6T3_ARATH,F4JG86_ARATH,F4JVF4_ARATH Protein ACCELERATED CELL DEATH 6,Ankyrin repeat family protein (Uncharacterized protein AT4g03470),Ankyrin repeat family protein (At4g03450) (Uncharacterized protein AT4g03450) (Uncharacterized protein F9H3.7),AT4G05040 protein (AT4g05040/T32N4_3) (Ankyrin repeat family protein) (At4g05040),Ankyrin repeat family protein,Ankyrin repeat family protein (Uncharacterized protein AT4g03440) (Uncharacterized protein F9H3.6) DISRUPTION PHENOTYPE: Reduced responsiveness to benzothiazole (BTH) and upon P. syringae infection with reduced salicylic acid (SA) levels and increased disease susceptibility and attenuated defenses (PubMed:14507999). Increased sensitivity to biotrophic fungi (e.g. Golovinomyces orontii T1 and G. cichoracearum UCSC1), biotrophic oomycetes (e.g. Hyaloperonospora arabidopsidis Noco2) and hemi-biotrophic bacteria (e.g. Pseudomonas syringae pv. tomato DC3000) (PubMed:20520716). {ECO:0000269|PubMed:14507999, ECO:0000269|PubMed:20520716}. Dwarf plants punctate pattern of cell death accumulates salicylic acid and camalexin. FUNCTION: Dose-dependent activator of the defense response against virulent pathogens, including bacteria, fungi and oomycetes, that acts in a positive feedback loop with the defense signal salicylic acid (SA) (PubMed:14507999, PubMed:20520716, PubMed:10488236, PubMed:16297071, PubMed:19144005). Regulates the salicylic acid (SA) signaling pathway leading to cell death and modulating cell fate (e.g. cell enlargement and/or cell division) (PubMed:14507999, PubMed:10488236, PubMed:11722764). In response to SA signaling, triggers the accumulation of FLS2 at the plasma membrane, thus priming defenses (PubMed:24923602). Involved in SA-dependent freezing signaling and tolerance (PubMed:19959255). {ECO:0000269|PubMed:10488236, ECO:0000269|PubMed:11722764, ECO:0000269|PubMed:14507999, ECO:0000269|PubMed:16297071, ECO:0000269|PubMed:19144005, ECO:0000269|PubMed:19959255, ECO:0000269|PubMed:20520716, ECO:0000269|PubMed:24923602}. MISCELLANEOUS: Sequence variations impacting defense responses are observed between cultivars. Enhanced resistance is correlated with a substantial reduction in vegetative biomass. {ECO:0000269|PubMed:20520716}.; MISCELLANEOUS: The dominant gain-of-function mutant acd6-1 and over-expressing plant ACD6-o is dwarf and shows spontaneous cell death and increased disease resistance, as well as increased defenses and better responsiveness to salicylic acid (SA). These symptoms are SA-dependent (PubMed:14507999, PubMed:20520716, PubMed:10488236, PubMed:16297071, PubMed:19144005). In acd6-1, constitutively high free and total SA levels leading to collapsed dead cells with adjacent enlarged cells in the palisade parenchyma cell layer. This phenotype is absent in NahG background, in which SA is degraded (PubMed:11722764). Strong accumulation of camalexin (an anti-fungal compound) and SA in acd6-1 (PubMed:19144005). The mutant acd6-1 exhibits freezing sensitivity, this sensitivity is suppressed in nahG background (PubMed:19959255). {ECO:0000269|PubMed:10488236, ECO:0000269|PubMed:11722764, ECO:0000269|PubMed:14507999, ECO:0000269|PubMed:16297071, ECO:0000269|PubMed:19144005, ECO:0000269|PubMed:19959255, ECO:0000269|PubMed:20520716}. 73527,76274,70467,62916,83013,83854,58305,74516,76639,67111,72664,72987,76710 Protein ACCELERATED CELL DEATH 6,Ankyrin repeat family protein (Uncharacterized protein AT4g03470),Ankyrin repeat family protein (At4g03450) (Uncharacterized protein AT4g03450) (Uncharacterized protein F9H3.7),AT4G05040 protein (AT4g05040/T32N4_3) (Ankyrin repeat family protein) (At4g05040),Ankyrin repeat family protein,Ankyrin repeat family protein (Uncharacterized protein AT4g03440) (Uncharacterized protein F9H3.6) integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; cell death [GO:0008219]; cellular response to salicylic acid stimulus [GO:0071446]; defense response to bacterium, incompatible interaction [GO:0009816]; positive regulation of defense response to bacterium [GO:1900426]; positive regulation of defense response to oomycetes [GO:1902290]; protein ubiquitination [GO:0016567]; regulation of defense response to fungus [GO:1900150]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; response to bacterium [GO:0009617]; response to freezing [GO:0050826]; response to light stimulus [GO:0009416]; response to salicylic acid [GO:0009751]; response to virus [GO:0009615],integral component of membrane [GO:0016021]; membrane [GO:0016020]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031] DEVELOPMENTAL STAGE: Expression in leaves increases with age. {ECO:0000269|PubMed:20520716}. TISSUE SPECIFICITY: Basal expression requires light and salicylic acid (SA). {ECO:0000269|PubMed:14507999}. locus:2129690;,locus:2128791;,locus:2128771;,locus:2138391;,locus:2128761;,locus:2128721;,locus:2129685; AT4G14400,AT4G03470,AT4G03450,AT4G05040,AT4G03440,AT4G03480,AT4G14390 ankyrin repeat family protein NA NA NA NA NA NA NA ENOG411ECF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EF0Q O22258 O22258_ARATH Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At2g47530) 19969 Pollen Ole e 1 allergen and extensin family protein (Uncharacterized protein At2g47530) locus:2062035; AT2G47530 Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411EF0V Q9ZUX9,Q9SIT3,Q3E914 Q9ZUX9_ARATH,Q9SIT3_ARATH,Q3E914_ARATH Transcription factor IIS family protein (Uncharacterized protein At2g27780),Transcription factor IIS family protein (Uncharacterized protein At2g13640),Transcription factor IIS family protein 42310,44464,42489 Transcription factor IIS family protein (Uncharacterized protein At2g27780),Transcription factor IIS family protein (Uncharacterized protein At2g13640),Transcription factor IIS family protein nucleus [GO:0005634],nucleus [GO:0005634]; vacuolar membrane [GO:0005774] locus:2042082;,locus:2054080;,locus:2146415; AT2G27780,AT2G13640,AT5G27310 CONTAINS InterPro DOMAIN s TFIIS N-terminal (InterPro IPR017923) Transcription elongation factor TFIIS CRSP70 N-terminal sub-type (InterPro IPR003617) NA NA NA NA NA NA NA ENOG411EF0Y ATL55 Q9LX93 ATL55_ARATH E3 ubiquitin-protein ligase RING1 (EC 2.3.2.27) (RING-H2 finger protein ATL55) (RING-type E3 ubiquitin transferase ATL55) DISRUPTION PHENOTYPE: Hyposensitivity to the fungal toxin fumonisin B1 (FB1). {ECO:0000269|PubMed:18643987}. FUNCTION: E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD. May be involved in the early steps of the plant defense signaling pathway. Undergoes auto-ubiquitination. {ECO:0000269|PubMed:18643987}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34042 E3 ubiquitin-protein ligase RING1 (EC 2.3.2.27) (RING-H2 finger protein ATL55) (RING-type E3 ubiquitin transferase ATL55) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; defense response [GO:0006952]; positive regulation of programmed cell death [GO:0043068]; programmed cell death [GO:0012501]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein autoubiquitination [GO:0051865]; protein ubiquitination [GO:0016567]; response to bacterium [GO:0009617]; response to chitin [GO:0010200]; response to molecule of fungal origin [GO:0002238] locus:2142449; AT5G10380 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EF0X DOF4.3,DOF4.5,DOF4.4,DOF4.2 Q9SUB0,O49550,Q9SUA9,Q9SUB1 DOF43_ARATH,DOF45_ARATH,DOF44_ARATH,DOF42_ARATH Dof zinc finger protein DOF4.3 (AtDOF4.3),Dof zinc finger protein DOF4.5 (AtDOF4.5),Dof zinc finger protein DOF4.4 (AtDOF4.4),Dof zinc finger protein DOF4.2 (AtDOF4.2) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. 26076,28094,23970,22108 Dof zinc finger protein DOF4.3 (AtDOF4.3),Dof zinc finger protein DOF4.5 (AtDOF4.5),Dof zinc finger protein DOF4.4 (AtDOF4.4),Dof zinc finger protein DOF4.2 (AtDOF4.2) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; fruit development [GO:0010154]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary shoot formation [GO:2000032]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cotyledon development [GO:0048825]; mucilage metabolic process involved in seed coat development [GO:0048359]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of secondary shoot formation [GO:2000032]; regulation of transcription, DNA-templated [GO:0006355]; seed coat development [GO:0010214]; transcription, DNA-templated [GO:0006351] locus:2133064;,locus:2127353;,locus:2133079;,locus:2133149; AT4G21040,AT4G21080,AT4G21050,AT4G21030 Dof-type zinc finger domain-containing protein NA NA NA NA NA NA NA ENOG411DWA0 SH3P2 Q8VWF1,Q9SVJ1 SH3P2_ARATH,Q9SVJ1_ARATH SH3 domain-containing protein 2,SH3 domain-containing protein (Uncharacterized protein AT4g39020) (Uncharacterized protein F19H22.120) FUNCTION: Regulator for autophaosome formation and/or maturation (PubMed:24249832, Ref.9). Binds phosphatidylinositol 3-phosphate (PubMed:24249832). {ECO:0000269|PubMed:24249832, ECO:0000269|Ref.9}. MISCELLANEOUS: Knockdown of SH3P2 is developmentally lethal and significantly suppresses autophagosome formation. {ECO:0000269|PubMed:24249832}. 40925,19451 SH3 domain-containing protein 2,SH3 domain-containing protein (Uncharacterized protein AT4g39020) (Uncharacterized protein F19H22.120) autophagosome membrane [GO:0000421]; clathrin-coated vesicle [GO:0030136]; cytosol [GO:0005829]; late endosome [GO:0005770]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Highly expressed in seedlings. Detected in flowers, leaves and stems. {ECO:0000269|PubMed:11701884}. locus:2139554;,locus:2120257; AT4G34660,AT4G39020 src homology-3 domain protein 3 Os10g0512700 protein (SH3 domain-containing protein 3, putative, expressed) Q337C1 Q337C1_ORYSJ Os10g0512700 LOC_Os10g36870 Os10g0512700 OsJ_32141 OSNPB_100512700 ENOG411EH1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DWA1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRAF-type zinc finger family protein Os02g0605500 protein (UbiA prenyltransferase-like protein),Os12g0181300 protein,Os05g0305200 protein (Fragment),Os04g0218900 protein (Fragment) Q6K8R6,Q0IPN1,A0A0P0WKH9,A0A0P0W7H2 Q6K8R6_ORYSJ,Q0IPN1_ORYSJ,A0A0P0WKH9_ORYSJ,A0A0P0W7H2_ORYSJ Os02g0605500 OJ1058_F07.14 OsJ_07445 OSNPB_020605500,Os12g0181300 Os12g0181300 OSNPB_120181300,Os05g0305200 OSNPB_050305200,Os04g0218900 OSNPB_040218900 ENOG411EH1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class I and II NA NA NA NA NA NA NA ENOG411EF0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EF0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive NA NA NA NA NA NA NA ENOG411EF0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0596666 protein,Os11g0596700 protein,Os11g0596633 protein A0A0P0Y413,A0A0N7KT61,A0A0P0Y439 A0A0P0Y413_ORYSJ,A0A0N7KT61_ORYSJ,A0A0P0Y439_ORYSJ Os11g0596666 OSNPB_110596666,Os11g0596700 OSNPB_110596700,Os11g0596633 OSNPB_110596633 ENOG411EF0M ENODL10 Q8L6Z5,Q9FJM3,A0A1P8BFN6 Q8L6Z5_ARATH,Q9FJM3_ARATH,A0A1P8BFN6_ARATH At5g57920 (Early nodulin-like protein 10) (Phytocyanin/early nodulin-like protein),Early nodulin-like protein 10 (Phytocyanin/early nodulin-like protein),Early nodulin-like protein 10 20343,20216,24200 At5g57920 (Early nodulin-like protein 10) (Phytocyanin/early nodulin-like protein),Early nodulin-like protein 10 (Phytocyanin/early nodulin-like protein),Early nodulin-like protein 10 anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055],electron carrier activity [GO:0009055] locus:2174428; AT5G57920 Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411EH14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0210201 protein A0A0P0WJ97 A0A0P0WJ97_ORYSJ Os05g0210201 OSNPB_050210201 ENOG411EH17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411EK71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Beige BEACH domain containing protein NA NA NA NA NA NA NA ENOG411EK73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like Os08g0295000 protein (Fragment),Os08g0295100 protein (Fragment) A0A0N7KPL8,A0A0P0XE68 A0A0N7KPL8_ORYSJ,A0A0P0XE68_ORYSJ Os08g0295000 OSNPB_080295000,Os08g0295100 OSNPB_080295100 ENOG411EMBP GLR3.3 Q9C8E7,A0A1P8AT56 GLR33_ARATH,A0A1P8AT56_ARATH Glutamate receptor 3.3 (Ligand-gated ion channel 3.3),Glutamate receptor 3.3 DISRUPTION PHENOTYPE: Impaired glutamate-triggered (and Ala, Asn, Cys, Gly, Ser and glutathione-triggered) membrane depolarization and calcium rise. Reduced wound-activated surface potential changes (WASP) duration in the wounded leaf, resulting in a decreased induction of the regulators of jasmonate-signaling in the systemic leaves. Glr3.3 and glr3.6 double mutant has no detectable changes in surface potential in systemic leaves and the induction of the regulators of jasmonate-signaling is more strongly decreased. {ECO:0000269|PubMed:17012403, ECO:0000269|PubMed:18162597, ECO:0000269|PubMed:23969459}. Slightly reduced root gravitropism-E. Spalding-2010 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel, at least in roots and hypocotyls. Can be triggered by Ala, Asn, Cys, Glu, Gly, Ser and glutathione (a tripeptide consisting of Glu-Gly-Cys). Mediates leaf-to-leaf wound signaling. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. {ECO:0000269|PubMed:17012403, ECO:0000269|PubMed:18162597, ECO:0000269|PubMed:23969459}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 104689,73378 Glutamate receptor 3.3 (Ligand-gated ion channel 3.3),Glutamate receptor 3.3 integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267]; cellular response to amino acid stimulus [GO:0071230]; defense response to fungus [GO:0050832]; gravitropism [GO:0009630]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; innate immune response [GO:0045087]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; extracellular-glutamate-gated ion channel activity [GO:0005234]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots and siliques. {ECO:0000269|PubMed:12082126}. locus:2206095; AT1G42540 Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411E8ZG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH2U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase/Carboxylesterase NA NA NA NA NA NA NA ENOG411EJ4F F24G24.30 Q9FYM4,O82618,Q9SKG8 Q9FYM4_ARATH,O82618_ARATH,Q9SKG8_ARATH F21J9.4 (No-apical-meristem-associated carboxy-terminal domain protein),No-apical-meristem-associated carboxy-terminal domain protein (T9A4.8 protein) (Uncharacterized protein AT4g10230) (Uncharacterized protein F24G24.30),No-apical-meristem-associated carboxy-terminal domain protein (Uncharacterized protein At2g13760) 33466,31104,24187 F21J9.4 (No-apical-meristem-associated carboxy-terminal domain protein),No-apical-meristem-associated carboxy-terminal domain protein (T9A4.8 protein) (Uncharacterized protein AT4g10230) (Uncharacterized protein F24G24.30),No-apical-meristem-associated carboxy-terminal domain protein (Uncharacterized protein At2g13760) locus:2024001;,locus:2122744;,locus:2040431; AT1G24380,AT4G10230,AT2G13760 NA NA NA NA NA NA NA NA ENOG411EIED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0469100 protein Q0IX33 Q0IX33_ORYSJ Os10g0469100 OSNPB_100469100 ENOG411EIEZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIHR Q6NPS5 Q6NPS5_ARATH At3g24250 (Glycine-rich protein) (Uncharacterized protein At3g24250) 12908 At3g24250 (Glycine-rich protein) (Uncharacterized protein At3g24250) locus:2085954; AT3G24250 glycine-rich protein NA NA NA NA NA NA NA ENOG411EIE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIE0 THI2.1 Q42596 THN21_ARATH Thionin-2.1 [Cleaved into: Thionin-2.1; Acidic protein] FUNCTION: Seems to function as a defense factor. Thionins are small plant proteins which are toxic to animal cells. They seem to exert their toxic effect at the level of the cell membrane. Their precise function is not known. {ECO:0000269|PubMed:9144959, ECO:0000269|PubMed:9628023}. 14351 Thionin-2.1 [Cleaved into: Thionin-2.1; Acidic protein] extracellular region [GO:0005576]; defense response [GO:0006952] TISSUE SPECIFICITY: Detected in rosette leaves and at a very high level in flowers and in siliques. {ECO:0000269|PubMed:8552715, ECO:0000269|PubMed:9628023}. locus:2207006; AT1G72260 Thionins are small plant proteins which are toxic to animal cells. They seem to exert their toxic effect at the level of the cell membrane. Their precise function is not known NA NA NA NA NA NA NA ENOG411EIE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0440100 protein (Putative glycin-rich protein) Q6Z142 Q6Z142_ORYSJ Os07g0440100 Os07g0440100 OSNPB_070440100 P0035G02.7 P0443H10.27 ENOG411EG65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger C3HC4 type family protein NA NA NA NA NA NA NA ENOG411EG63 F4JQT4 F4JQT4_ARATH Glycine-rich cell wall protein-like protein 17638 Glycine-rich cell wall protein-like protein locus:2141902; AT4G18280 NA NA NA NA NA NA NA NA ENOG411EG60 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MiAMP1 NA NA NA NA NA NA NA ENOG411EG61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CP12 domain NA NA NA NA NA NA NA ENOG411E0I9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os04g0631800 protein (Fragment),Os04g0226600 protein,Os04g0632300 protein A0A0P0WF66,A0A0P0W7R2,A0A0P0WF41 A0A0P0WF66_ORYSJ,A0A0P0W7R2_ORYSJ,A0A0P0WF41_ORYSJ Os04g0631800 OSNPB_040631800,Os04g0226600 OSNPB_040226600,Os04g0632300 OSNPB_040632300 ENOG411E0I4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Phosphoenolpyruvate/phosphate translocator 3, chloroplastic (OsPPT3) Q5VQL3 PPT3_ORYSJ PPT3 Os01g0172100 LOC_Os01g07730 P0583G08.29 FUNCTION: Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP) and dihydroxyacetone phosphate. {ECO:0000269|PubMed:17981875}. ENOG411E0I6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ubiquitin carboxyl-terminal hydrolase Os01g0771400 protein A0A0P0V8R4 A0A0P0V8R4_ORYSJ Os01g0771400 OSNPB_010771400 ENOG411E0I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: attachment protein Os08g0282400 protein (Putative alpha-soluble NSF attachment protein) (cDNA clone:J023136I24, full insert sequence) Q6YS11 Q6YS11_ORYSJ Os08g0282400 B1446H11.22 OsJ_26737 OSNPB_080282400 ENOG411E0IH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_GATA GATA transcription factor,Os01g0745700 protein Q6F2Z7,Q5JLX9,Q8LIZ3 Q6F2Z7_ORYSJ,Q5JLX9_ORYSJ,Q8LIZ3_ORYSJ Os05g0520300 Os05g0520300 OSNPB_050520300 P0483D07.7 P0599F04.17,OSJNBa0014K08.27-2 Os01g0745700 OSNPB_010745700,Os01g0745700 OSJNBa0014K08.27-1 OSNPB_010745700 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000256|PIRNR:PIRNR016992}. ENOG411E0II ARID1 Q84JT7,A0A1P8AY66 ARID1_ARATH,A0A1P8AY66_ARATH AT-rich interactive domain-containing protein 1 (ARID domain-containing protein 1) (ARID and ELM2 domain-containing protein 1),ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein 63315,64822 AT-rich interactive domain-containing protein 1 (ARID domain-containing protein 1) (ARID and ELM2 domain-containing protein 1),ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein generative cell nucleus [GO:0048555]; histone deacetylase complex [GO:0000118]; microsporocyte nucleus [GO:0048556]; DNA binding [GO:0003677]; histone deacetylation [GO:0016575]; pollen sperm cell differentiation [GO:0048235]; positive regulation of gene expression [GO:0010628]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2062959; AT2G46040 domain-containing protein NA NA NA NA NA NA NA ENOG411E0IC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os02g0763800 protein (Fragment),Os02g0763350 protein A0A0P0VPX3,A0A0N7KG52 A0A0P0VPX3_ORYSJ,A0A0N7KG52_ORYSJ Os02g0763800 OSNPB_020763800,Os02g0763350 OSNPB_020763350 ENOG411E0IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os01g0699100 protein (Fragment),Os01g0699400 protein (Fragment) Q0JK37,Q0JK36 Q0JK37_ORYSJ,Q0JK36_ORYSJ Os01g0699100 Os01g0699100 OSNPB_010699100,Os01g0699400 Os01g0699400 OSNPB_010699400 ENOG411E0IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Triose-phosphate Transporter family Os01g0504100 protein (Purine permease-like protein) (cDNA clone:001-206-B08, full insert sequence) Q5QNA0 Q5QNA0_ORYSJ Os01g0504100 Os01g0504100 OSNPB_010504100 P0436D06.2 ENOG411EF7U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:hATC NA NA NA NA NA NA NA ENOG411EG6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6K T6H20.90 Q9STG0,A0A178VAD6 Q9STG0_ARATH,A0A178VAD6_ARATH Uncharacterized protein T6H20.90,Uncharacterized protein 17053,12655 Uncharacterized protein T6H20.90,Uncharacterized protein locus:2102727; AT3G46880 NA NA NA NA NA NA NA NA ENOG411EG6H RL5 Q8GW75 RADL5_ARATH Protein RADIALIS-like 5 (AtRL5) (Protein RAD-like 5) (Protein RADIALIS-LIKE SANT/MYB 4) (Protein RSM4) FUNCTION: Probable transcription factor. {ECO:0000250}. MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily. {ECO:0000305|PubMed:16463103}. 11445 Protein RADIALIS-like 5 (AtRL5) (Protein RAD-like 5) (Protein RADIALIS-LIKE SANT/MYB 4) (Protein RSM4) nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2016417; AT1G19510 SANT NA NA NA NA NA NA NA ENOG411EG6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: epimerase dehydratase NA NA NA NA NA NA NA ENOG411EG6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJD A0A1P8B6A7,Q84JI2 A0A1P8B6A7_ARATH,Q84JI2_ARATH Uncharacterized protein,Uncharacterized protein At4g23770 19865,16137 Uncharacterized protein,Uncharacterized protein At4g23770 locus:2128474;,locus:2128454; AT4G23780,AT4G23770 NA NA NA NA NA NA NA NA ENOG411EIJF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJA Q8LCC1,B3H7D5 Q8LCC1_ARATH,B3H7D5_ARATH At4g12735,Uncharacterized protein 6724,6688 At4g12735,Uncharacterized protein plasma membrane [GO:0005886] locus:1006230359;,locus:4515103382; AT4G12735,AT4G12731 NA NA NA NA NA NA NA NA ENOG411EIJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) NA NA NA NA NA NA NA ENOG411EIJC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Os05g0531000 protein (cDNA clone:J013098O22, full insert sequence) Q75K57 Q75K57_ORYSJ Os05g0531000 Os05g0531000 OJ1131_E09.13 OsJ_19308 OSJNBa0053E05.2 OSNPB_050531000 ENOG411EIJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function DUF223 NA NA NA NA NA NA NA ENOG411EIJR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family Os09g0306632 protein,Os08g0357700 protein A0A0P0XL10,A0A0P0XF56 A0A0P0XL10_ORYSJ,A0A0P0XF56_ORYSJ Os09g0306632 OSNPB_090306632,Os08g0357700 OSNPB_080357700 ENOG411EIJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0611300 protein A0A0P0VLI8 A0A0P0VLI8_ORYSJ Os02g0611300 OSNPB_020611300 ENOG411EIJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-alanyl-D-alanine carboxypeptidase NA NA NA NA NA NA NA ENOG411EIJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJ7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Von willebrand factor NA NA NA NA NA NA NA ENOG411EIJ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0808450 protein A0A0N7KGA8 A0A0N7KGA8_ORYSJ Os02g0808450 OSNPB_020808450 ENOG411EIJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen ole e 6 NA NA NA NA NA NA NA ENOG411EIJ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Orf183 protein Q8HCQ5 Q8HCQ5_ORYSJ orf183 ENOG411EG6Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative gypsy type transposon NA NA NA NA NA NA NA ENOG411EA89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0861200 protein,Os02g0109600 protein,Os01g0273900 protein,Os04g0377400 protein,Os05g0122100 protein A0A0P0VAQ4,A0A0P0VDU2,A0A0P0V1P2,A0A0P0W9L3,A0A0P0WHL4 A0A0P0VAQ4_ORYSJ,A0A0P0VDU2_ORYSJ,A0A0P0V1P2_ORYSJ,A0A0P0W9L3_ORYSJ,A0A0P0WHL4_ORYSJ Os01g0861200 OSNPB_010861200,Os02g0109600 OSNPB_020109600,Os01g0273900 OSNPB_010273900,Os04g0377400 OSNPB_040377400,Os05g0122100 OSNPB_050122100 ENOG411EES7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) NA NA NA NA NA NA NA ENOG411EES6 GPL3,F17A17.5 Q9SJM4,Q9S6Z9 STKLI_ARATH,Q9S6Z9_ARATH GLABROUS1 enhancer-binding protein-like 3 (Protein GPL3) (Storekeeper-like protein At2g36340),F17A17.5 protein (MLP3.16 protein) FUNCTION: Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}. 47339,16456 GLABROUS1 enhancer-binding protein-like 3 (Protein GPL3) (Storekeeper-like protein At2g36340),F17A17.5 protein (MLP3.16 protein) nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of rosette leaves, in primary and secondary roots and at the base of flowers and siliques. {ECO:0000269|PubMed:18162594}. locus:2049495;,locus:2077497; AT2G36340,AT3G07710 Protein of unknown function DUF573 NA NA NA NA NA NA NA ENOG411EES5 T2P11.11 Q9ZVG6 Q9ZVG6_ARATH T2P11.11 protein (Uncharacterized protein At1g26920) (Uncharacterized protein At1g26920; T2P11.11) (Uncharacterized protein T2P11.11) (Zinc finger CCHC domain protein) 19537 T2P11.11 protein (Uncharacterized protein At1g26920) (Uncharacterized protein At1g26920; T2P11.11) (Uncharacterized protein T2P11.11) (Zinc finger CCHC domain protein) locus:2202760; AT1G26920 NA NA NA NA NA NA NA NA ENOG411EES3 ADF3 Q9ZSK4,F4JXD5 ADF3_ARATH,F4JXD5_ARATH Actin-depolymerizing factor 3 (ADF-3) (AtADF3),Actin depolymerizing factor 3 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers. {ECO:0000250|UniProtKB:Q39251}. 15922,14124 Actin-depolymerizing factor 3 (ADF-3) (AtADF3),Actin depolymerizing factor 3 actin cytoskeleton [GO:0015629]; chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979],actin cytoskeleton [GO:0015629]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042] locus:2168052; AT5G59880 ADF NA NA NA NA NA NA NA ENOG411EES2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0173400 protein (Fragment) Q0D8A4 Q0D8A4_ORYSJ Os07g0173400 Os07g0173400 OSNPB_070173400 ENOG411EES1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EES0 GDU2 Q9SW07 GDU2_ARATH Protein GLUTAMINE DUMPER 2 FUNCTION: Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. {ECO:0000269|PubMed:20018597, ECO:0000269|Ref.8}. MISCELLANEOUS: Overexpression of GLUTAMINE DUMPER 2 leads to free amino acid levels accumulation and plant size decrease (Ref.8, PubMed:20018597). 14223 Protein GLUTAMINE DUMPER 2 integral component of membrane [GO:0016021]; amino acid transport [GO:0006865]; regulation of amino acid export [GO:0080143] TISSUE SPECIFICITY: Expressed in the vascular tissues. {ECO:0000269|PubMed:20018597, ECO:0000269|Ref.8}. locus:2117517; AT4G25760 glutamine dumper 2 NA NA NA NA NA NA NA ENOG411EES9 B3H6J7,A8MS73 B3H6J7_ARATH,A8MS73_ARATH RING/U-box superfamily protein 16782,16645 RING/U-box superfamily protein integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:4515102991;,locus:4010713708; AT2G44581,AT2G44578 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EES8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EESV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EEST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mago nashi protein NA NA NA NA NA NA NA ENOG411EESS Q6NM33 Q6NM33_ARATH At5g19340 (Uncharacterized protein At5g19340) 29355 At5g19340 (Uncharacterized protein At5g19340) locus:2150300; AT5G19340 NA NA NA NA NA NA NA NA ENOG411EESR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EESQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger A20 and AN1 domain-containing stress-associated protein 8-like NA NA NA NA NA NA NA ENOG411EESP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411EESY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EESD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0674000 protein A0A0P0X090 A0A0P0X090_ORYSJ Os06g0674000 OSNPB_060674000 ENOG411EESC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EESB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CobW_C NA NA NA NA NA NA NA ENOG411EESN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EESM O23610,O49698 Y4177_ARATH,Y4179_ARATH Uncharacterized protein At4g17700,UPF0725 protein At4g17990 18762,26350 Uncharacterized protein At4g17700,UPF0725 protein At4g17990 locus:2129391; AT4G17700,AT4G17990 Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411EESJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EESI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411EC53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0818450 protein A0A0P0VR88 A0A0P0VR88_ORYSJ Os02g0818450 OSNPB_020818450 ENOG411EC52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411DVWN PSL4 Q9FM96 PSL4_ARATH Glucosidase 2 subunit beta (Glucosidase II subunit beta) (Protein PRIORITY IN SWEET LIFE 4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have compromised defense response induced by the bacterial elicitor elongation factor Tu (EF-Tu). {ECO:0000269|PubMed:20007779}. Insensitive to elf18 (bacterial defense inducer)-Y. Saijo-2009 FUNCTION: Regulatory subunit of glucosidase II (By similarity). Essential for stable accumulation of the receptor EFR that determines the specific perception of bacterial elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Required for sustained activation of EFR-mediated signaling, but not receptor FLS2-mediated signaling elicited by the bacterial flagellin flg22. {ECO:0000250, ECO:0000269|PubMed:20007779}. PATHWAY: Glycan metabolism; N-glycan metabolism. 73214 Glucosidase 2 subunit beta (Glucosidase II subunit beta) (Protein PRIORITY IN SWEET LIFE 4) endoplasmic reticulum [GO:0005783]; defense response to bacterium [GO:0042742]; N-glycan processing [GO:0006491] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, leaf blades, mature stems, cauline leaves, flower buds, flowers and siliques. {ECO:0000269|PubMed:12492837}. locus:2161078; AT5G56360 glucosidase 2 subunit beta-like Glucosidase 2 subunit beta (Glucosidase II subunit beta),Os01g0276800 protein (Fragment) Q5NBP9,A0A0P0V1J5,A0A0P0V162,A0A0P0V1M1,A0A0P0V0Y5 GLU2B_ORYSJ,A0A0P0V1J5_ORYSJ,A0A0P0V162_ORYSJ,A0A0P0V1M1_ORYSJ,A0A0P0V0Y5_ORYSJ Os01g0276800 OsJ_01291 P0038F12.26,Os01g0276800 OSNPB_010276800 FUNCTION: Regulatory subunit of glucosidase II. May be required for defense response elicited by pathogen-associated molecular patterns (PAMPs) (By similarity). {ECO:0000250}. ENOG411DVWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme OSJNBb0056F09.13 protein (Os04g0272400 protein) (cDNA clone:J023142P15, full insert sequence) Q7XSY3 Q7XSY3_ORYSJ Os04g0272400 OsJ_14085 OSJNBb0056F09.13 OSNPB_040272400 ENOG411DVWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2009) NA NA NA NA NA NA NA ENOG411DVWJ Q9SJT4 Q9SJT4_ARATH Expressed protein (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At2g21440) 112066 Expressed protein (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At2g21440) RNA binding [GO:0003723] locus:2050024; AT2G21440 RNA-binding protein Os03g0801800 protein (RNA recognition motif family protein, expressed) (cDNA clone:J013098N20, full insert sequence),Os03g0824300 protein Q10BX7,A0A0P0W4V1 Q10BX7_ORYSJ,A0A0P0W4V1_ORYSJ Os03g0801800 LOC_Os03g58720 Os03g0801800 OsJ_12988 OSNPB_030801800,Os03g0824300 OSNPB_030824300 ENOG411DVWI RPN2,HAP6 Q93Z16,F4JIM7 RPN2_ARATH,F4JIM7_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (EC 2.4.99.18) (Protein HAPLESS 6) (Ribophorin II) (RPN-II) (Ribophorin-2),Ribophorin II (RPN2) family protein DISRUPTION PHENOTYPE: Short pollen tube growth and failure to exit the style. {ECO:0000269|PubMed:15514068}. Complete male gametophyte defective-D. Preuss-2004 FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000250}. PATHWAY: Protein modification; protein glycosylation. ARA:AT4G21150-MONOMER; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 2.4.99.18 74668,73398 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (EC 2.4.99.18) (Protein HAPLESS 6) (Ribophorin II) (RPN-II) (Ribophorin-2),Ribophorin II (RPN2) family protein endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; oligosaccharyltransferase complex [GO:0008250]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; transferase activity, transferring glycosyl groups [GO:0016757]; protein N-linked glycosylation [GO:0006487]; response to cold [GO:0009409],integral component of membrane [GO:0016021]; oligosaccharyltransferase complex [GO:0008250]; protein N-linked glycosylation [GO:0006487] locus:2127328; AT4G21150 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (EC 2.4.99.18) (Ribophorin II) (RPN-II) (Ribophorin-2) Q5N7W3 RPN2_ORYSJ RPN2 Os01g0911200 LOC_Os01g68324 P0470A12.10 FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000250}. ENOG411DVWH F24G16.140 Q9M1Y7,F4IT21 Q9M1Y7_ARATH,F4IT21_ARATH Uncharacterized protein F24G16.140,Uncharacterized protein 32417,32167 Uncharacterized protein F24G16.140,Uncharacterized protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2080452;,locus:1005716651; AT3G59870,AT2G43945 NA Cyanobacteria-specific protein-like (Os01g0338600 protein) Q5ZB95 Q5ZB95_ORYSJ Os01g0338600 B1088D01.9 OsJ_01610 OSNPB_010338600 ENOG411DVWG CESA8 Q8LPK5 CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP-forming] (AtCesA8) (EC 2.4.1.12) (Protein IRREGULAR XYLEM 1) (AtIRX1) (Protein LEAF WILTING 2) DISRUPTION PHENOTYPE: Enhanced resistance to the pathogens Ralstonia solanacearum and Plectosphaerella cucumerina. {ECO:0000269|PubMed:17351116}. Does not exhibit any obvious increase in its susceptibility to wilting.,In general mutant plants grow normally and do not exhibit any readily apparent alterations in morphology except that they are slightly smaller than the wild type. In addition mutant plants tend to grow slightly more slowly than do wild-type plants.,With the exception of the collapsed xylem phenotype both the organization of the vascular tissue and the organization of the entire stem of the three irx mutants are identical to that of the wild type. In addition to stems the collapsed xylem phenotype of irx plants has been observed in mature hypocotyls and in the primary root and petioles.,Phenotype not described.,The homozygous double mutants progeny were severely dwarfed and sterile. The leaves were dark green indicating an increase in chloroplasts per leaf area of the mutants which was probably due to the reduced cell size. Several double mutant plants were unable to bolt and only grew rosette leaves.,The homozygous mutant progeny are severely deformed and are smaller in size compared with the wild type possibly reflecting a reduction in water transporting ability.,Similar phenotype to that of the irx8-2 irx1-1 double mutant.,Grown under normal conditions mutant plants show weaker or no wilting phenotype. Mutant leaves become wilty after plants are transferred from normal conditions to higher transpiration conditions for 6 hrs whereas wt plants did not show the leaf-wilting phenotype under the same conditions. Mutants are more resistant to drought and to osmotic stresss in both germination and growth. Transcription of stress-inducible marker genes (RD29A P5CS and ABA2) during non-stress conditions is induced in mutant plants. Collapsed xylem; Cellulose-deficient secondary walls-S. Turner-2000 FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the secondary cell wall formation. Required for the xylem cell wall thickening. {ECO:0000269|PubMed:11148295, ECO:0000269|PubMed:15998313, ECO:0000269|PubMed:17351116, ECO:0000269|PubMed:9165747}. PATHWAY: Glycan metabolism; plant cellulose biosynthesis. MetaCyc:MONOMER-2366; 2.4.1.12; 2.4.1.12 111521 Cellulose synthase A catalytic subunit 8 [UDP-forming] (AtCesA8) (EC 2.4.1.12) (Protein IRREGULAR XYLEM 1) (AtIRX1) (Protein LEAF WILTING 2) cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; metal ion binding [GO:0046872]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; plant-type primary cell wall biogenesis [GO:0009833]; plant-type secondary cell wall biogenesis [GO:0009834]; response to osmotic stress [GO:0006970]; response to water deprivation [GO:0009414] DEVELOPMENTAL STAGE: Not found in embryos. Increasing amount as stems mature. {ECO:0000269|PubMed:11148295}. TISSUE SPECIFICITY: Confined to secondary cell wall developing tissues such as xylems and interfascicular regions. Expressed in young plants, stems, flowers and inflorescences, but not in leaves. {ECO:0000269|PubMed:11148295, ECO:0000269|PubMed:12481071, ECO:0000269|PubMed:12538856}. locus:2124167; AT4G18780 cellulose synthase Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC 2.4.1.12) (OsCesA4),Os01g0750300 protein,Os01g0750300 protein (Fragment) Q5JN63,A0A0P0V889,A0A0P0V882 CESA4_ORYSJ,A0A0P0V889_ORYSJ,A0A0P0V882_ORYSJ CESA4 Os01g0750300 LOC_Os01g54620 P0046E05.4,Os01g0750300 OSNPB_010750300 DISRUPTION PHENOTYPE: Plants develop a brittle culm (bc) phenotype with a reduction of up to 80 percent of cellulose content in culm. {ECO:0000269|PubMed:12970476, ECO:0000269|PubMed:18037139}. FUNCTION: Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity). Involved in the secondary cell wall formation. {ECO:0000250, ECO:0000269|PubMed:12970476, ECO:0000269|PubMed:18037139}. ENOG411DVWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0160900 protein A0A0P0XS18 A0A0P0XS18_ORYSJ Os10g0160900 OSNPB_100160900 ENOG411DVWE RUG2 Q9LK81,Q8GYL6 Q9LK81_ARATH,Q8GYL6_ARATH Regulator of chromosome condensation (Cell cycle regulatory protein) like (Regulator of chromosome condensation (RCC1) family protein),Putative regulator of chromosome condensation (Cell cycle regulatory protein) (Regulator of chromosome condensation (RCC1) family protein) (Regulator of chromosome condensation like) 48230,48317 Regulator of chromosome condensation (Cell cycle regulatory protein) like (Regulator of chromosome condensation (RCC1) family protein),Putative regulator of chromosome condensation (Cell cycle regulatory protein) (Regulator of chromosome condensation (RCC1) family protein) (Regulator of chromosome condensation like) locus:2156233; AT5G48330 Regulator of chromosome condensation Os02g0197500 protein Q0E325 Q0E325_ORYSJ Os02g0197500 Os02g0197500 OSNPB_020197500 ENOG411DVWD TPK1 Q8LBL1 KCO1_ARATH Two-pore potassium channel 1 (AtTPK1) (Calcium-activated outward-rectifying potassium channel 1) (AtKCO1) DISRUPTION PHENOTYPE: Reduced growth in both high and low K(+) conditions. Slower germination and increased sensitivity to abscisic acid. Reduction of the total tonoplast current density. {ECO:0000269|PubMed:17563365}. Currents mediated by slow-activating vacuolar (SV) channels of mesophyll cell vacuoles were significantly smaller in kco1 plants compared to the wild-type Reduced slow-activating vacuolar channel currents; Visible phenotypes not discussed-K. Palme-2002 FUNCTION: Voltage-independent, large conductance and potassium-selective tonoplast ion channel. Regulated by cytoplasmic calcium and pH. Does not mediate slow-vacuolar (SV) ionic currents, but essential to establish VK currents. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+), Cs(+) or Li(+). Involved in intracellular K(+) redistribution and/or K(+) retranslocation between different tissues. {ECO:0000269|PubMed:16113216, ECO:0000269|PubMed:17563365, ECO:0000269|PubMed:17764516, ECO:0000269|PubMed:21697507}. MISCELLANEOUS: 14-3-3 protein binding is not involved in endoplasmic reticulum export and tonoplast targeting. ARA:AT5G55630-MONOMER;MetaCyc:MONOMER-14554; 40727 Two-pore potassium channel 1 (AtTPK1) (Calcium-activated outward-rectifying potassium channel 1) (AtKCO1) integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; vacuolar membrane [GO:0005774]; ion channel activity [GO:0005216]; metal ion binding [GO:0046872]; potassium ion leak channel activity [GO:0022841]; cellular potassium ion homeostasis [GO:0030007]; protein homooligomerization [GO:0051260]; regulation of seed germination [GO:0010029]; regulation of stomatal movement [GO:0010119]; stabilization of membrane potential [GO:0030322] TISSUE SPECIFICITY: Detected in mesophyll cells, guard cells and vascular tissues of the leaves. Expressed in the hilum, where the funiculus is attached during fruit maturation and in the embryo. Also expressed at a lower level in seedlings, root tips and elongation zones, and flowers. Could be detected in mitotically active tissues. {ECO:0000269|PubMed:12148538, ECO:0000269|PubMed:16984403}. locus:2162162; AT5G55630 Potassium channel Two pore potassium channel a (Two K(+) channel a) (Calcium-activated outward-rectifying potassium channel 1) (OsKCO1),Two pore potassium channel b (Two K(+) channel b) (Calcium-activated outward-rectifying potassium channel 2) (OsKCO2) Q850M0,Q8LIN5 KCO1_ORYSJ,KCO2_ORYSJ TPKA KCO1 Os03g0752300 LOC_Os03g54100 OJ1112_G08.7 OsJ_12594 OSJNBa0032E21.10 OSJNBa0047E24.7,TPKB KCO2 Os07g0108800 LOC_Os07g01810 OJ1567_G09.108 OsJ_22819 P0585H11.123 FUNCTION: Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of large vacuoles. Functions independently of the voltage difference across the membrane. {ECO:0000269|PubMed:21224427}.,FUNCTION: Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of protein storage vacuoles. Functions independently of the voltage difference across the membrane. {ECO:0000269|PubMed:21224427}. ENOG411DVWC MXK3.5 Q9LV94,B9DH89,A0A1P8BBQ2 Q9LV94_ARATH,B9DH89_ARATH,A0A1P8BBQ2_ARATH AT5g64830/MXK3_5 (At5g64830) (Programmed cell death 2 C-terminal domain-containing protein) (Similarity to unknown protein),AT5G64830 protein (Programmed cell death 2 C-terminal domain-containing protein),Programmed cell death 2 C-terminal domain-containing protein 42656,33601,30734 AT5g64830/MXK3_5 (At5g64830) (Programmed cell death 2 C-terminal domain-containing protein) (Similarity to unknown protein),AT5G64830 protein (Programmed cell death 2 C-terminal domain-containing protein),Programmed cell death 2 C-terminal domain-containing protein cytoplasm [GO:0005737] locus:2177679; AT5G64830 programmed cell death OSJNBb0079B02.4 protein (Os04g0640800 protein) (cDNA clone:J013026G17, full insert sequence) Q7X681 Q7X681_ORYSJ Os04g0640800 Os04g0640800 OSJNBb0079B02.4 OSNPB_040640800 ENOG411DVWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-) B7FAP2,A0A0N7KK90 B7FAP2_ORYSJ,A0A0N7KK90_ORYSJ Os01g0179600 Os01g0179600 OSNPB_010179600,Os05g0179950 OSNPB_050179950 ENOG411DVWZ MMT1 Q9LTB2 MMT1_ARATH Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met S-methyltransferase) FUNCTION: Catalyzes the S-methylmethionine (SMM) biosynthesis from adenosyl-L-homocysteine (AdoMet) and methionine. SMM biosynthesis (by MMT1) and degradation (by HMT-1, HMT-2 and HMT-3) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level. Also able to catalyze the selenium-methylmethionine (SeMM) from AdoMet and selenium-methionine (SeMet). May play a role in phoem sulfur transport; such function is however not essential. {ECO:0000269|PubMed:10449582, ECO:0000269|PubMed:12376649}. ARA:AT5G49810-MONOMER; 2.1.1.12 118716 Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met S-methyltransferase) cytosol [GO:0005829]; methionine S-methyltransferase activity [GO:0030732]; pyridoxal phosphate binding [GO:0030170]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; biosynthetic process [GO:0009058]; S-adenosylmethionine metabolic process [GO:0046500]; selenium compound metabolic process [GO:0001887] TISSUE SPECIFICITY: Expressed in roots, rosette leaves and cauline leaves. Expressed at a lower level in developing seeds. {ECO:0000269|PubMed:11309147}. locus:2155466; AT5G49810 Catalyzes the S-methylmethionine (SMM) biosynthesis from adenosyl-L-homocysteine (AdoMet) and methionine. SMM biosynthesis (by MMT1) and degradation (by HMT-1 HMT-2 and HMT-3) constitute the SMM cycle in plants which is probably required to achieve short term control of AdoMet level. Also able to catalyze the selenium-methylmethionine (SeMM) from AdoMet and selenium- methionine (SeMet). May play a role in phoem sulfur transport Methionine S-methyltransferase (EC 2.1.1.12) Q75M18 Q75M18_ORYSJ Os05g0105000 OsJ_16807 OSJNBb0035J08.4 OSNPB_050105000 P0668H12.19 ENOG411DVWY Q9CAF9 IOJAM_ARATH Protein Iojap-related, mitochondrial (Synonyms) FUNCTION: May be a ribosome silencing factor involved in organelle biogenesis and required for germination. {ECO:0000269|PubMed:21908688}. 20550 Protein Iojap-related, mitochondrial (Synonyms) mitochondrion [GO:0005739]; ribosomal large subunit binding [GO:0043023]; negative regulation of ribosome biogenesis [GO:0090071]; negative regulation of translation [GO:0017148] locus:2008560; AT1G67620 Pfam:DUF143 AGR_C_5039p, putative, expressed (Os12g0241000 protein) (Os12g0241100 protein) (cDNA clone:J023001D05, full insert sequence) B7EFL6 B7EFL6_ORYSJ Os12g0241100 LOC_Os12g13824 Os12g0241000 OsJ_35690 OSNPB_120241100 ENOG411DVWX TORMOZEMBRYO DEFECTIVE Q9LFE2 Q9LFE2_ARATH Transducin family protein / WD-40 repeat family protein (WD40-repeat protein) Embryo proper is unable to execute regulated divisions in reference to the choice of division plane and the timeing of the division particularly longitudinal divisions of the plane of the apical-basal axis.,Homozygotes are embryo lethal due to the abortion of toz/toz seeds. Transmission of the mutation is not affected through the pollen only through the ovules. Homozygote embryos also show abnormal expression of patterning genes such as STM MP FIL and ANT. Embryo defective; Female gametophyte defective-M. Griffith-2003 R-ATH-6791226; 96698 Transducin family protein / WD-40 repeat family protein (WD40-repeat protein) nucleolus [GO:0005730]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; embryonic pattern specification [GO:0009880]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2148965; AT5G16750 Transducin beta-like protein OSJNBa0009P12.21 protein (Os04g0592700 protein) (cDNA clone:J033052D05, full insert sequence) Q0JAK5 Q0JAK5_ORYSJ Os04g0592700 Os04g0592700 OsJ_15986 OSJNBa0009P12.21 OSNPB_040592700 ENOG411DVWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7),Os12g0196300 protein (Fragment) Q5QNM7,A0A0P0Y871 Q5QNM7_ORYSJ,A0A0P0Y871_ORYSJ Os01g0205900 Os01g0205900 OSNPB_010205900 P0451C06.29,Os12g0196300 OSNPB_120196300 ENOG411DVWV UBP19 Q9SJA1,C0Z3D8 UBP19_ARATH,C0Z3D8_ARATH Ubiquitin carboxyl-terminal hydrolase 19 (EC 3.4.19.12) (Deubiquitinating enzyme 19) (AtUBP19) (Ubiquitin thioesterase 19) (Ubiquitin-specific-processing protease 19),AT2G24640 protein (Ubiquitin-specific protease 19) FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT2G24640-MONOMER; 3.4.19.12 75720,56521 Ubiquitin carboxyl-terminal hydrolase 19 (EC 3.4.19.12) (Deubiquitinating enzyme 19) (AtUBP19) (Ubiquitin thioesterase 19) (Ubiquitin-specific-processing protease 19),AT2G24640 protein (Ubiquitin-specific protease 19) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2046678; AT2G24640 ubiquitin carboxyl-terminal hydrolase Os06g0654000 protein (Fragment) Q0DAG6 Q0DAG6_ORYSJ Os06g0654000 Os06g0654000 OSNPB_060654000 ENOG411DVWU LWD1,LWD2 Q9LPV9,Q38960 LWD1_ARATH,LWD2_ARATH WD repeat-containing protein LWD1 (Protein ANTHOCYANIN 11-A) (AtAN11-A) (Protein LIGHT-REGULATED WD1) (WD repeat-containing protein AN11-A),WD repeat-containing protein LWD2 (Protein ANTHOCYANIN 11-B) (AtAN11-B) (Protein LIGHT-REGULATED WD2) (WD repeat-containing protein AN11-B) DISRUPTION PHENOTYPE: Plants lacking LWD1 do not show obvious phenotypic alterations. Plants lacking both LWD1 and LWD2 are early flowering and this phenotype is more prominent under short-day conditions. {ECO:0000269|PubMed:18676661}.,DISRUPTION PHENOTYPE: Plants lacking LWD2 do not show obvious phenotypic alterations. Plants lacking both LWD1 and LWD2 are early flowering and this phenotype is more prominent under short-day conditions. {ECO:0000269|PubMed:18676661}. FUNCTION: Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. Required for the expression of APRR9, APRR7, and APRR5. Regulated by APRR9 and APRR7 at the transcriptional level, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491). May function to delay the expression of the morning genes until dawn approaches. {ECO:0000269|PubMed:18676661, ECO:0000269|PubMed:21357491}.,FUNCTION: Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. Required for the expression of APRR9, APRR7, and APRR5. Regulated by APRR9 and APRR7 at the transcriptional level, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491). {ECO:0000269|PubMed:18676661, ECO:0000269|PubMed:21357491}. R-ATH-8951664; 39089,39092 WD repeat-containing protein LWD1 (Protein ANTHOCYANIN 11-A) (AtAN11-A) (Protein LIGHT-REGULATED WD1) (WD repeat-containing protein AN11-A),WD repeat-containing protein LWD2 (Protein ANTHOCYANIN 11-B) (AtAN11-B) (Protein LIGHT-REGULATED WD2) (WD repeat-containing protein AN11-B) nucleus [GO:0005634]; transcription regulatory region DNA binding [GO:0044212]; anthocyanin-containing compound biosynthetic process [GO:0009718]; entrainment of circadian clock by photoperiod [GO:0043153]; photoperiodism, flowering [GO:0048573]; rhythmic process [GO:0048511],nucleus [GO:0005634]; entrainment of circadian clock by photoperiod [GO:0043153]; photoperiodism, flowering [GO:0048573]; rhythmic process [GO:0048511] DEVELOPMENTAL STAGE: Exhibits circadian rhythm expression. {ECO:0000269|PubMed:18676661}.,DEVELOPMENTAL STAGE: Constant expression level. {ECO:0000269|PubMed:18676661}. locus:2010356;,locus:2090792; AT1G12910,AT3G26640 WD repeat-containing protein Os02g0524600 protein (Putative WD40 repeat protein) (cDNA, clone: J100014C18, full insert sequence) Q6H7B2 Q6H7B2_ORYSJ Os02g0524600 OsJ_06961 OSNPB_020524600 P0415B12.25 ENOG411DVWT PED1 Q56WD9 THIK2_ARATH 3-ketoacyl-CoA thiolase 2, peroxisomal (EC 2.3.1.16) (Acetyl-CoA acyltransferase 2) (Beta-ketothiolase 2) (Peroxisomal 3-oxoacyl-CoA thiolase 2) (Peroxisome defective protein 1) Seedling lethal without exogenous sucrose; Insensitive to 2,4-DB-M. Nishimura-1998 FUNCTION: Involved in long chain fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth. Confers sensitivity to 2,4-dichlorophenoxybutiric acid (2,4-DB). Required for local and systemic induction of jasmonic acid (JA) biosynthesis after wounding. Seems to be involved in JA biosynthesis during senescence. {ECO:0000269|PubMed:11696182, ECO:0000269|PubMed:11891244, ECO:0000269|PubMed:15141068, ECO:0000269|PubMed:15979881, ECO:0000269|PubMed:9490742}. PATHWAY: Lipid metabolism; fatty acid metabolism. MetaCyc:AT2G33150-MONOMER; R-ATH-2046106;R-ATH-390247;R-ATH-6798695; 2.3.1.16; 2.3.1.16 48579 3-ketoacyl-CoA thiolase 2, peroxisomal (EC 2.3.1.16) (Acetyl-CoA acyltransferase 2) (Beta-ketothiolase 2) (Peroxisomal 3-oxoacyl-CoA thiolase 2) (Peroxisome defective protein 1) chloroplast [GO:0009507]; glyoxysome [GO:0009514]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; peroxisome [GO:0005777]; vacuolar membrane [GO:0005774]; acetyl-CoA C-acyltransferase activity [GO:0003988]; fatty acid beta-oxidation [GO:0006635]; glyoxysome organization [GO:0010111]; jasmonic acid biosynthetic process [GO:0009695]; oxylipin biosynthetic process [GO:0031408]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; response to wounding [GO:0009611] DEVELOPMENTAL STAGE: Levels increase strongly upon imbibition and decrease 3 days later. Strongly induced in leaves during senescence. {ECO:0000269|PubMed:11356168, ECO:0000269|PubMed:11696182, ECO:0000269|PubMed:11891244}. TISSUE SPECIFICITY: Accumulates in etiolated cotyledons and in seedlings, also present in roots, flowers and siliques (at protein level). High levels in wounded leaves. {ECO:0000269|PubMed:10212254, ECO:0000269|PubMed:11696182, ECO:0000269|PubMed:15141068, ECO:0000269|PubMed:9490742}. locus:2046565; AT2G33150 3-ketoacyl-coa thiolase 3-ketoacyl-CoA thiolase 2, peroxisomal, putative, expressed (Os10g0457600 protein) (Putative thiolase) (cDNA clone:J023121H13, full insert sequence),3-ketoacyl-CoA thiolase-like protein (Os02g0817700 protein) (Putative 3-ketoacyl-CoA thiolase acetyl-CoA acyltransferase) Q94LR9,Q84P96 Q94LR9_ORYSJ,Q84P96_ORYSJ Os10g0457600 LOC_Os10g31950 Os10g0457600 OsJ_31778 OSJNBb0011A08.2 OSNPB_100457600,Os02g0817700 Os02g0817700 OJ1136_C12.17 OSNPB_020817700 ENOG411DVWS Q8GYD0,Q9C9E6,O04088,B3H5T8,F4IM73 Q8GYD0_ARATH,Q9C9E6_ARATH,O04088_ARATH,B3H5T8_ARATH,F4IM73_ARATH Lung seven transmembrane receptor family protein (Uncharacterized protein At1g61670/T13M11_2),Lung seven transmembrane receptor family protein (Uncharacterized protein T10D10.5),Expressed protein (Lung seven transmembrane receptor family protein) (Membrane protein PTM1 isolog; 58165-60455),Lung seven transmembrane receptor family protein 57690,57445,58158,50810,55776 Lung seven transmembrane receptor family protein (Uncharacterized protein At1g61670/T13M11_2),Lung seven transmembrane receptor family protein (Uncharacterized protein T10D10.5),Expressed protein (Lung seven transmembrane receptor family protein) (Membrane protein PTM1 isolog; 58165-60455),Lung seven transmembrane receptor family protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; vacuole [GO:0005773],integral component of membrane [GO:0016021] locus:2195758;,locus:2194017;,locus:2197449;,locus:2045766; AT1G61670,AT1G72480,AT1G10980,AT2G01070 lung seven transmembrane Lung seven transmembrane receptor family protein, expressed (Os11g0546100 protein),Membrane protein PTM1-like (Os09g0439700 protein) (cDNA clone:J023013H12, full insert sequence),Lung seven transmembrane receptor family protein, expressed (Os03g0334800 protein),Os09g0439700 protein (Fragment),Os03g0334800 protein (Fragment),Os12g0456950 protein Q2R2X1,Q69P89,Q10LU2,A0A0P0XNN3,A0A0P0VX63,A0A0N7KU01 Q2R2X1_ORYSJ,Q69P89_ORYSJ,Q10LU2_ORYSJ,A0A0P0XNN3_ORYSJ,A0A0P0VX63_ORYSJ,A0A0N7KU01_ORYSJ Os11g0546100 LOC_Os11g34360 Os11g0546100 OSNPB_110546100,Os09g0439700 OJ1344_B01.20 OSNPB_090439700,LOC_Os03g21690 Os03g0334800 OSNPB_030334800,Os09g0439700 OSNPB_090439700,Os03g0334800 OSNPB_030334800,Os12g0456950 OSNPB_120456950 ENOG411DVWR BRX,BRXL1 Q17TI5,O82281,A0A1P8AWZ2,F4IFN0 BRX_ARATH,BRXL1_ARATH,A0A1P8AWZ2_ARATH,F4IFN0_ARATH Protein BREVIS RADIX (AtBRX),Protein Brevis radix-like 1 (AtBRXL1),DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein,BREVIS RADIX-like protein DISRUPTION PHENOTYPE: Short primary root and increased number of lateral roots. Reduced cotyledon and leaf size. Enhanced response to abscisic acid-mediated inhibition of root growth and insensitivity to cytokinin induced inhibition of lateral root initiation. {ECO:0000269|PubMed:19037657, ECO:0000269|PubMed:19201913, ECO:0000269|PubMed:20649916}.,DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16514016}. Short-root phenotype characterized by short primary root and more branched root system.,lateral root formation in the mutant is insensitive to exogenous cytokinin; altered auxin response in lateral root primordium in the presence of exogenous cytokinin.,enhanced response to ABA-mediated inhibition of root growth,The roots of brxS seedlings are as short both when grown in the light or in darkness. In contrast to the root system the shoot system morphology and flowering time of brxS plants resembles the Sav-0 shoot system which was used as the control. Cell elongation and cell production rate in the root meristematic and elongation zone were decreased in brxS seedlings contributing approximately one-third and two-thirds respectively to the overall difference in root length as compared with Sav-0 seedlings.,No visible root phenotype. Short roots; Sensitive to ABA-P. Rodriguez-2009 FUNCTION: Acts as a regulator of cell proliferation and elongation in the root and shoot. Probable transcription regulator. Regulated by the auxin response factor ARF5. Polarly localized in vascular cells and subject to endocytic recycling. Required for CPD expression and for correct nuclear auxin response. Mediates cross-talk between the auxin and brassinosteroid pathways. BRX is a target for auxin-induced, proteasome-mediated degradation. {ECO:0000269|PubMed:15031265, ECO:0000269|PubMed:19201913, ECO:0000269|PubMed:19465596, ECO:0000269|PubMed:20649916, ECO:0000269|PubMed:21149702}.,FUNCTION: May act as a regulator of cell proliferation and elongation in the root. {ECO:0000269|PubMed:16514016}. MISCELLANEOUS: The truncated variant in cv. Uk-1 results in short root phenotype.,MISCELLANEOUS: Overexpression of BRXL1 can rescue the short root phenotype. However, it does not act redundantly with BRX in vivo, presumably due to a much lower level of expression. 38761,38005,40390,18163 Protein BREVIS RADIX (AtBRX),Protein Brevis radix-like 1 (AtBRXL1),DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein,BREVIS RADIX-like protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; auxin-activated signaling pathway [GO:0009734]; cytokinin-activated signaling pathway [GO:0009736]; lateral root development [GO:0048527]; response to abscisic acid [GO:0009737]; root development [GO:0048364],nucleus [GO:0005634] DEVELOPMENTAL STAGE: Ubiquitously expressed in early embryos and becomes restricted to the vasculature in the mature embryo and at later stages of development. {ECO:0000269|PubMed:19465596}. TISSUE SPECIFICITY: Expressed in the developing protophloem up to the elongation zone in root meristem of young seedlings, in the columella and the phloem vasculature throughout the root and in the phloem vasculature in the shoot. Detected in the shoot meristem and in primordia. Low expression in stomata. {ECO:0000269|PubMed:17006513, ECO:0000269|PubMed:19201913, ECO:0000269|PubMed:20649916, ECO:0000269|PubMed:21149702}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:16514016}. locus:2034486;,locus:2058694;,locus:2046997; AT1G31880,AT2G35600,AT2G21030 protein BREVIS RADIX-like NA NA NA NA NA NA NA ENOG411DVWQ SCPL34 Q0WPR4,A0A1P8BEA9,A8MQN9,F4KCT5 SCP34_ARATH,A0A1P8BEA9_ARATH,A8MQN9_ARATH,F4KCT5_ARATH Serine carboxypeptidase-like 34 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) FUNCTION: Probable carboxypeptidase. {ECO:0000250}. R-ATH-6798695; 3.4.16.- 56329,45733,51823,45726 Serine carboxypeptidase-like 34 (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; vacuole [GO:0005773]; serine-type carboxypeptidase activity [GO:0004185]; proteolysis involved in cellular protein catabolic process [GO:0051603],serine-type carboxypeptidase activity [GO:0004185] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15908604}. locus:2166870; AT5G23210 serine carboxypeptidase-like Carboxypeptidase (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) (Fragment) Q6H7I7,A0A0P0VMA7 Q6H7I7_ORYSJ,A0A0P0VMA7_ORYSJ OJ1643_A10.33-1 Os02g0634700 OJ1626_B09.2-1 OsJ_07638 OSNPB_020634700,Os02g0634700 OSNPB_020634700 ENOG411DVWP CATHB3,CATHB1,CATHB2 Q94K85,F4HVZ1,Q93VC9 CATB3_ARATH,CATB1_ARATH,CATB2_ARATH Cathepsin B-like protease 3 (EC 3.4.22.-) (Cathepsin B3) (AtCathB3),Cathepsin B-like protease 1 (EC 3.4.22.-) (Cathepsin B1) (AtCathB1),Cathepsin B-like protease 2 (EC 3.4.22.-) (Cathepsin B2) (AtCathB2) DISRUPTION PHENOTYPE: Delayed germination and decreased germination rate. {ECO:0000269|PubMed:24600022}. FUNCTION: Thiol protease that possesses high activity toward the cathepsin synthetic substrate Arg-Arg-7-amino-4-methylcoumarin (RR-AMC) and the papain substrate Gly-Arg-Arg-AMC (GRR-AMC). Can cleave the papain substrate Phe-Arg-AMC (FR-AMC) and the caspase-3 substrate Asp-Glu-Val-Asp-rhodamine 110 (DEVD-R110). Has no activity towards the caspase-6 substrate VEID-AMC, caspase-8 substrate IETD-AMC and caspase-1 substrate YVAD-AMC (PubMed:27058316). Plays a central role in plant programmed cell death (PCD). In addition to its role in protein degradation, may cleave and/or degrade a number of target proteins, activating signaling towards PCD. Contributes to the increase of caspase-3-like activity after UV-C-induced PCD and is required for abiotic stress-induced PCD (PubMed:27058316). Functions redundantly with CATHB1 and CATHB2 in basal defense and distinct forms of plant programmed cell death (PCD). Participates to the establishment of basal resistance against the bacterial pathogen Pseudomonase syringae pv. tomato DC3000. Required for full levels of PCD during resistance (R) gene-mediated hypersensitive response (HR). Involved in the regulation of senescence, a developmental form of PCD in plants (PubMed:19453434). May be involved in the degradation of seed storage proteins during seed germination (PubMed:24600022). {ECO:0000269|PubMed:19453434, ECO:0000269|PubMed:24600022, ECO:0000269|PubMed:27058316}.,FUNCTION: Thiol protease that plays a central role in plant programmed cell death (PCD). In addition to its role in protein degradation, may cleave and/or degrade a number of target proteins, activating signaling towards PCD. Contributes to the increase of caspase-3-like activity after UV-C-induced PCD and is required for abiotic stress-induced PCD (PubMed:27058316). Functions redundantly with CATHB2 and CATHB3 in basal defense and distinct forms of plant programmed cell death (PCD). Participates to the establishment of basal resistance against the bacterial pathogen Pseudomonase syringae pv. tomato DC3000. Required for full levels of PCD during resistance (R) gene-mediated hypersensitive response (HR). Involved in the regulation of senescence, a developmental form of PCD in plants (PubMed:19453434). {ECO:0000269|PubMed:19453434, ECO:0000269|PubMed:27058316}.,FUNCTION: Thiol protease that plays a central role in plant programmed cell death (PCD). In addition to its role in protein degradation, may cleave and/or degrade a number of target proteins, activating signaling towards PCD. Contributes to the increase of caspase-3-like activity after UV-C-induced PCD and is required for abiotic stress-induced PCD (PubMed:27058316). Functions redundantly with CATHB1 and CATHB3 in basal defense and distinct forms of plant programmed cell death (PCD). Participates to the establishment of basal resistance against the bacterial pathogen Pseudomonase syringae pv. tomato DC3000. Required for full levels of PCD during resistance (R) gene-mediated hypersensitive response (HR). Involved in the regulation of senescence, a developmental form of PCD in plants (PubMed:19453434). {ECO:0000269|PubMed:19453434, ECO:0000269|PubMed:27058316}. R-ATH-6798695; 3.4.22.- 39418,42263,40033 Cathepsin B-like protease 3 (EC 3.4.22.-) (Cathepsin B3) (AtCathB3),Cathepsin B-like protease 1 (EC 3.4.22.-) (Cathepsin B1) (AtCathB1),Cathepsin B-like protease 2 (EC 3.4.22.-) (Cathepsin B2) (AtCathB2) cytosol [GO:0005829]; extracellular space [GO:0005615]; lysosome [GO:0005764]; vacuole [GO:0005773]; cysteine-type endopeptidase activity [GO:0004197]; defense response [GO:0006952]; proteolysis involved in cellular protein catabolic process [GO:0051603]; regulation of catalytic activity [GO:0050790],extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; defense response [GO:0006952]; proteolysis involved in cellular protein catabolic process [GO:0051603]; regulation of catalytic activity [GO:0050790],extracellular space [GO:0005615]; lysosome [GO:0005764]; vacuole [GO:0005773]; cysteine-type endopeptidase activity [GO:0004197]; defense response [GO:0006952]; proteolysis involved in cellular protein catabolic process [GO:0051603]; regulation of catalytic activity [GO:0050790] DEVELOPMENTAL STAGE: Expressed in developing siliques 13 to 15 days after pollination (DAP). In germinating seeds, expressed from 12 to 48 hours after imbibition with a peak of expression at 24 hours. {ECO:0000269|PubMed:24600022}.,DEVELOPMENTAL STAGE: Expressed in developing siliques 13 to 15 days after pollination (DAP). {ECO:0000269|PubMed:24600022}. TISSUE SPECIFICITY: Expressed in root tips, root vasculature, emerging lateral root, hydathodes, vascular tissue of leaves, vasculature of sepals and anthers, stigma, and vascular bundles at the base and the upper part of the siliques. {ECO:0000269|PubMed:24600022}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:24600022}. locus:2133402;,locus:2204873;,locus:505006093; AT4G01610,AT1G02300,AT1G02305 Cathepsin B-like Os05g0310500 protein A0A0P0WKG9,A0A0N7KKI1 A0A0P0WKG9_ORYSJ,A0A0N7KKI1_ORYSJ Os05g0310500 OSNPB_050310500 ENOG411DVW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Shikimate kinase Shikimate kinase 1, chloroplastic (OsSK1) (EC 2.7.1.71),Shikimate kinase 2, chloroplastic (OsSK2) (EC 2.7.1.71),Shikimate kinase 3, chloroplastic (OsSK3) (EC 2.7.1.71),Os06g0225800 protein (Fragment),Os04g0640600 protein,Os02g0749300 protein Q5NTH4,Q5NTH3,Q7X7H9,A0A0P0WUU0,A0A0P0WFI9,A0A0P0WFA7,A0A0P0VPH6 SK1_ORYSJ,SK2_ORYSJ,SK3_ORYSJ,A0A0P0WUU0_ORYSJ,A0A0P0WFI9_ORYSJ,A0A0P0WFA7_ORYSJ,A0A0P0VPH6_ORYSJ SK1 Os02g0749300 LOC_Os02g51410,SK2 Os06g0225800 LOC_Os06g12150,SK3 Os04g0640600 LOC_Os04g54800 OsJ_16353 OSJNBb0079B02.2,Os06g0225800 OSNPB_060225800,Os04g0640600 OSNPB_040640600,Os02g0749300 OSNPB_020749300 FUNCTION: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. {ECO:0000269|PubMed:15891897}. ENOG411DVW7 NFYC10,NFYC5,NFYC8,NFYC1,NFYC6,NFYC7,NFYC4 Q58CM8,Q9FGP6,Q4PSE2,Q9SMP0,Q9FGP7,Q9FGP8,Q9FMV5 NFYCA_ARATH,NFYC5_ARATH,NFYC8_ARATH,NFYC1_ARATH,NFYC6_ARATH,NFYC7_ARATH,NFYC4_ARATH Nuclear transcription factor Y subunit C-10 (AtNF-YC-10),Nuclear transcription factor Y subunit C-5 (AtNF-YC-5),Nuclear transcription factor Y subunit C-8 (AtNF-YC-8),Nuclear transcription factor Y subunit C-1 (AtNF-YC-1) (Transcriptional activator HAP5A),Nuclear transcription factor Y subunit C-6 (AtNF-YC-6),Nuclear transcription factor Y subunit C-7 (AtNF-YC-7),Nuclear transcription factor Y subunit C-4 (AtNF-YC-4) DISRUPTION PHENOTYPE: Altered response to abscisic acid (ABA). {ECO:0000269|PubMed:17322342}. FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.,FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. 22431,20400,20609,25329,22010,23195,27032 Nuclear transcription factor Y subunit C-10 (AtNF-YC-10),Nuclear transcription factor Y subunit C-5 (AtNF-YC-5),Nuclear transcription factor Y subunit C-8 (AtNF-YC-8),Nuclear transcription factor Y subunit C-1 (AtNF-YC-1) (Transcriptional activator HAP5A),Nuclear transcription factor Y subunit C-6 (AtNF-YC-6),Nuclear transcription factor Y subunit C-7 (AtNF-YC-7),Nuclear transcription factor Y subunit C-4 (AtNF-YC-4) CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],CCAAT-binding factor complex [GO:0016602]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of photomorphogenesis [GO:2000306]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; gibberellic acid mediated signaling pathway [GO:0009740]; negative regulation of starch metabolic process [GO:2000905]; positive regulation of photomorphogenesis [GO:2000306]; positive regulation of protein metabolic process [GO:0051247]; regulation of gene expression [GO:0010468]; regulation of long-day photoperiodism, flowering [GO:0048586]; regulation of seed germination [GO:0010029]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in inflorescences and flowers. {ECO:0000269|PubMed:11250072}.,TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.,TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:11250072}.,TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. locus:2176682;,locus:2159722;,locus:2143315;,locus:2114555;,locus:2159712;,locus:2159702;,locus:2167306; AT5G38140,AT5G50490,AT5G27910,AT3G48590,AT5G50480,AT5G50470,AT5G63470 Nuclear transcription factor Y subunit Nuclear transcription factor Y subunit C-2 (OsNF-YC2) (Transcriptional activator HAP5C) (OsHAP5C) A6BLW4 NFYC2_ORYSJ NFYC2 HAP5C Os03g0251350 LOC_Os03g14669 FUNCTION: Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. ENOG411DVW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF563) NA NA NA NA NA NA NA ENOG411DVW5 LRR-RLK C0LGM1,A0A1P8AXJ2,F4IPZ3,F4IPZ4 C0LGM1_ARATH,A0A1P8AXJ2_ARATH,F4IPZ3_ARATH,F4IPZ4_ARATH Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Fragment),Leucine-rich repeat protein kinase family protein 103556,79418,103485,79347 Leucine-rich repeat protein kinase family protein (Leucine-rich repeat receptor-like protein kinase) (Fragment),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2057991; AT2G37050 receptor-like serine threonine-protein kinase Leucine-rich repeat family protein, putative, expressed (Os12g0102500 protein) (cDNA clone:J033030E21, full insert sequence),Os12g0102500 protein (Fragment),Leucine-rich repeat family protein, putative, expressed (Os11g0102900 protein) Q2QYY2,Q0IQS8,Q2RBQ5 Q2QYY2_ORYSJ,Q0IQS8_ORYSJ,Q2RBQ5_ORYSJ Os12g0102500 LOC_Os12g01200 OsJ_34897 OSNPB_120102500,Os12g0102500 Os12g0102500 OSNPB_120102500,Os11g0102900 LOC_Os11g01200 OsJ_32637 OSNPB_110102900 ENOG411DVW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 DUF26-like protein (OSJNBa0011F23.18 protein) (OSJNBa0015K02.5 protein) (Os04g0659300 protein) (Putative receptor-like protein kinase) (Receptor-like protein kinase) (cDNA clone:006-211-C11, full insert sequence),OSJNBb0062H02.10 protein (Os04g0322100 protein) (cDNA, clone: J100048J12, full insert sequence),Os07g0541800 protein (Putative serine/threonine-specific protein kinase),Os07g0542400 protein (Putative serine/threonine kinase-related protein),Os07g0541900 protein (Putative serine/threonine kinase-related protein) (cDNA clone:002-145-F04, full insert sequence),Os04g0316200 protein,Os07g0542600 protein (cDNA, clone: J100053G09, full insert sequence),Os07g0542400 protein (Fragment),Os07g0540500 protein,Os07g0555700 protein Q8S3P3,Q7XW32,Q7F271,Q6Z5A3,Q6Z5A7,Q0JE78,B7FA79,A0A0P0X6W7,A0A0P0X7K2,A0A0P0X7E8 Q8S3P3_ORYSJ,Q7XW32_ORYSJ,Q7F271_ORYSJ,Q6Z5A3_ORYSJ,Q6Z5A7_ORYSJ,Q0JE78_ORYSJ,B7FA79_ORYSJ,A0A0P0X6W7_ORYSJ,A0A0P0X7K2_ORYSJ,A0A0P0X7E8_ORYSJ 24K23.14 Os04g0659300 OsJ_16483 OSJNBa0011F23.18 OSJNBa0015K02.5 OSNPB_040659300,Os04g0322100 Os04g0322100 OSJNBb0062H02.10 OSNPB_040322100,OJ1008_E09.122 Os07g0541800 OSNPB_070541800,Os07g0542400 OJ1729_E01.7 OSNPB_070542400,Os07g0541900 OJ1008_E09.124 Os07g0541900 OJ1729_E01.2 OsJ_24613 OSNPB_070541900,Os04g0316200 Os04g0316200 OSNPB_040316200,Os07g0542600 OsJ_24619 OSNPB_070542600,Os07g0542400 OSNPB_070542400,Os07g0540500 OSNPB_070540500,Os07g0555700 OSNPB_070555700 ENOG411DVW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box protein At2g27310-like NA NA NA NA NA NA NA ENOG411DVW2 Q9LZL8,A0A1P8BCW7 Q9LZL8_ARATH,A0A1P8BCW7_ARATH Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein),Pathogenesis-related thaumatin superfamily protein 31174,25558 Pathogenesis-related thaumatin superfamily protein (Thaumatin-like protein),Pathogenesis-related thaumatin superfamily protein locus:2185218; AT5G02140 thaumatin-like Thaumatin-like protein,Putative cyclin-D7-1 (G1/S-specific cyclin-D7-1) (CycD7;1) Q53MB8,Q53MB7 TLPH_ORYSJ,CCD71_ORYSJ Os11g0706600 LOC_Os11g47944 OsJ_033536,CYCD7-1 Os11g0706801 LOC_Os11g47950 OsJ_033537 ENOG411DVW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POLIIIAc Os02g0752600 protein A0A0P0VPQ2 A0A0P0VPQ2_ORYSJ Os02g0752600 OSNPB_020752600 ENOG411DVW0 DTX44 Q84K71 DTX44_ARATH Protein DETOXIFICATION 44, chloroplastic (AtDTX44) (Multidrug and toxic compound extrusion protein 44) (MATE protein 44) DISRUPTION PHENOTYPE: No reduction in aluminum tolerance. {ECO:0000269|PubMed:18826429}. 54910 Protein DETOXIFICATION 44, chloroplastic (AtDTX44) (Multidrug and toxic compound extrusion protein 44) (MATE protein 44) chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] TISSUE SPECIFICITY: Expressed in shoots. {ECO:0000269|PubMed:18826429}. locus:2057135; AT2G38330 Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) A0A0P0Y6K7 A0A0P0Y6K7_ORYSJ Os12g0106600 OSNPB_120106600 ENOG411DYVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Type III restriction enzyme res subunit Os03g0165266 protein A0A0P0VTG8 A0A0P0VTG8_ORYSJ Os03g0165266 OSNPB_030165266 ENOG411DYVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0182800 protein,Os10g0182700 protein B9G7S8,Q7G6C8 B9G7S8_ORYSJ,Q7G6C8_ORYSJ Os10g0182800 OsJ_30897 OSNPB_100182800,Os10g0182700 LOC_Os10g10320 OsJ_30896 OSJNAb0022I16.3 OSJNBb0022I16.11 OSNPB_100182700 ENOG411DYVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein At3g09040 Os11g0109800 protein,Os12g0109800 protein A0A0P0XXY2,A0A0P0Y672 A0A0P0XXY2_ORYSJ,A0A0P0Y672_ORYSJ Os11g0109800 OSNPB_110109800,Os12g0109800 OSNPB_120109800 ENOG411DYVF F8A24.10 Q9SF87 Q9SF87_ARATH At3g09850/F8A24_10 (D111/G-patch domain-containing protein) (F8A24.10 protein) 84222 At3g09850/F8A24_10 (D111/G-patch domain-containing protein) (F8A24.10 protein) nucleic acid binding [GO:0003676] locus:2085059; AT3G09850 G-patch domain Os08g0288500 protein (Fragment) A0A0P0XEK8 A0A0P0XEK8_ORYSJ Os08g0288500 OSNPB_080288500 ENOG411DYVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pectinesterase Pectinesterase (EC 3.1.1.11),Os05g0204037 protein,Os01g0377800 protein Q10MP6,Q7F0H7,A0A0P0WJ77,A0A0P0V2N2 Q10MP6_ORYSJ,Q7F0H7_ORYSJ,A0A0P0WJ77_ORYSJ,A0A0P0V2N2_ORYSJ Os03g0300500 LOC_Os03g18860 Os03g0300500 OsJ_10519 OSNPB_030300500,P0597G07.130 Os07g0691100 OSNPB_070691100,Os05g0204037 OSNPB_050204037,Os01g0377800 OSNPB_010377800 FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000256|RuleBase:RU000589}. ENOG411DYVJ Q9SK37,B3H6H6 Q9SK37_ARATH,B3H6H6_ARATH Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At2g24960),Myb/SANT-like DNA-binding domain protein 92532,89862 Myb/SANT-like DNA-binding domain protein (Uncharacterized protein At2g24960),Myb/SANT-like DNA-binding domain protein DNA binding [GO:0003677] locus:2047374; AT2G24960 NA NA NA NA NA NA NA NA ENOG411DYVI Q9LW25 Q9LW25_ARATH At3g26850 (Histone-lysine N-methyltransferase) (Uncharacterized protein At3g26850) 29575 At3g26850 (Histone-lysine N-methyltransferase) (Uncharacterized protein At3g26850) methyltransferase activity [GO:0008168] locus:2088414; AT3G26850 NA Expressed protein (Os03g0214900 protein) Q10Q04 Q10Q04_ORYSJ Os03g0214900 LOC_Os03g11580 Os03g0214900 OSNPB_030214900 ENOG411DYVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function DUF221 Early-responsive to dehydration protein, putative, expressed (Expressed protein) (Os03g0726300 protein) (cDNA clone:J023003A21, full insert sequence) Q75GI5 Q75GI5_ORYSJ Os03g0726300 OSJNBb0122C16.12 LOC_Os03g51620 Os03g0726300 OSJNBa0013A09.12 OSNPB_030726300 ENOG411DYVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os01g0813300 protein (Transcription factor AP2D10) (Fragment) Q2TQ30 Q2TQ30_ORYSJ AP2D10 Os01g0813300 OSNPB_010813300 ENOG411DYVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox RING-type E3 ubiquitin transferase (EC 2.3.2.27) Q7X741 Q7X741_ORYSJ Os04g0489800 OSJNBa0076N16.3 OSJNBa0084K20.5 OSNPB_040489800 ENOG411DYVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Anthocyanin 5-aromatic acyltransferase Os02g0483500 protein (Putative quercetin 3-O-glucoside-6''-O-malonyltransferase) (cDNA clone:J033136O19, full insert sequence),Os02g0484200 protein (Putative quercetin 3-O-glucoside-6''-O-malonyltransferase) (cDNA clone:J033148A21, full insert sequence),OSJNBa0035M09.5 protein (OSJNBb0015N08.15 protein) (Os04g0606000 protein) (cDNA clone:001-203-E12, full insert sequence) (cDNA clone:J033044F12, full insert sequence),Os02g0483800 protein (Putative anthocyanidin 3-O-glucoside-3'',6''-O-dimalonyltransferase),Os02g0484275 protein,Os02g0485000 protein (Fragment),Os02g0486500 protein,Os02g0484300 protein,Os02g0485800 protein Q6K2J2,Q6K6U4,Q7X7V6,Q6K807,B9F014,A0A0N7KFB0,A0A0P0VJ64,A0A0P0VJ26,A0A0P0VJ33 Q6K2J2_ORYSJ,Q6K6U4_ORYSJ,Q7X7V6_ORYSJ,Q6K807_ORYSJ,B9F014_ORYSJ,A0A0N7KFB0_ORYSJ,A0A0P0VJ64_ORYSJ,A0A0P0VJ26_ORYSJ,A0A0P0VJ33_ORYSJ Os02g0483500 OJ1122_H01.12 OSJNBa0091C16.42 OSNPB_020483500,Os02g0484200 Os02g0484200 OJ1122_H01.23 OSNPB_020484200 P0036H07.4,Os04g0606000 Os04g0606000 OSJNBa0035M09.5 OSJNBb0015N08.15 OSNPB_040606000,Os02g0483800 Os02g0483800 OJ1122_H01.17 OsJ_06753 OSNPB_020483800,Os02g0484275 OsJ_06756 OSNPB_020484275,Os02g0485000 OSNPB_020485000,Os02g0486500 OSNPB_020486500,Os02g0484300 OSNPB_020484300,Os02g0485800 OSNPB_020485800 ENOG411DYVV Q9LEW8,A0A1I9LR17 FN3KR_ARATH,A0A1I9LR17_ARATH Protein-ribulosamine 3-kinase, chloroplastic (EC 2.7.1.172) (Fructosamine 3-kinase-related protein) (AtFN3K-RP),Protein kinase superfamily protein FUNCTION: Initiates a process leading to the deglycation of proteins. Phosphorylates low-molecular-mass and protein-bound erythrulosamines and ribulosamines, but not fructosamines or psicosamines, on the third carbon of the sugar moiety. Protein-bound erythrulosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions. {ECO:0000269|PubMed:15705060}. R-ATH-163841; 2.7.1.172 36471,39542 Protein-ribulosamine 3-kinase, chloroplastic (EC 2.7.1.172) (Fructosamine 3-kinase-related protein) (AtFN3K-RP),Protein kinase superfamily protein chloroplast [GO:0009507]; mitochondrion [GO:0005739]; kinase activity [GO:0016301]; protein-ribulosamine 3-kinase activity [GO:0102193],kinase activity [GO:0016301] locus:2101022; AT3G61080 Phosphorylates low-molecular-mass and protein-bound erythrulosamines and ribulosamines but not fructosamines or psicosamines on the third carbon of the sugar moiety. Protein- bound erythrulosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions Protein-ribulosamine 3-kinase, chloroplastic (EC 2.7.1.172) (Fructosamine 3-kinase-related protein) Q10SM2 FN3KR_ORYSJ Os03g0117800 LOC_Os03g02640 OsJ_09183 FUNCTION: Phosphorylates low-molecular-mass and protein-bound erythrulosamines and ribulosamines, but not fructosamines or psicosamines, on the third carbon of the sugar moiety. Protein-bound erythrulosamine 3-phosphates and ribulosamine 3-phosphates are unstable and decompose under physiological conditions. Thus phosphorylation leads to deglycation (By similarity). {ECO:0000250}. ENOG411DYVT Q9FZ19 PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420 56557 Putative pentatricopeptide repeat-containing protein At1g02420 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2204913; AT1G02420 Pentatricopeptide repeat-containing protein Os03g0208600 protein (Pentatricopeptide, putative, expressed) Q8H058 Q8H058_ORYSJ OSJNBa0014O06.14 LOC_Os03g11020 Os03g0208600 OSNPB_030208600 ENOG411DYVY Q67ZW2,F4JN96,A0A1P8B933 Q67ZW2_ARATH,F4JN96_ARATH,A0A1P8B933_ARATH At4g11160 (Putative translation initiation factor IF-2) (Translation initiation factor 2, small GTP-binding protein) (Translation initiation factor IF-2 like protein),Translation initiation factor 2, small GTP-binding protein ARA:GQT-1624-MONOMER; 80229,80088,62561 At4g11160 (Putative translation initiation factor IF-2) (Translation initiation factor 2, small GTP-binding protein) (Translation initiation factor IF-2 like protein),Translation initiation factor 2, small GTP-binding protein intracellular [GO:0005622]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation initiation factor activity [GO:0003743] locus:2136098; AT4G11160 Translation initiation factor Os09g0515500 protein (Putative translation initiation factor IF-2) (cDNA clone:J013036C01, full insert sequence) Q69IM0 Q69IM0_ORYSJ Os09g0515500 Os09g0515500 OsJ_30008 OSJNBb0034B12.2 OSNPB_090515500 P0450E05.27 ENOG411DYV0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD homeobox protein Zinc-finger homeodomain protein 2 (OsZHD2),Zinc-finger homeodomain protein 1 (OsZHD1) Q6ZB90,Q6YXH5 ZHD2_ORYSJ,ZHD1_ORYSJ ZHD2 Os08g0479400 LOC_Os08g37400 OJ1113_A10.19 OsJ_27685,ZHD1 Os09g0466400 LOC_Os09g29130 OJ1005_D12.28 OsJ_29679 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411DYV7 MQD22.19 Q8LCK5,Q9FJQ8,A0A1P8AWK1,A0A1P8AWG5 Q8LCK5_ARATH,Q9FJQ8_ARATH,A0A1P8AWK1_ARATH,A0A1P8AWG5_ARATH SBP (S-ribonuclease binding protein) family protein,SBP (S-ribonuclease binding protein) family protein (Similarity to S-ribonuclease binding protein) (Uncharacterized protein At5g47050) 35235,33487,30247,34022 SBP (S-ribonuclease binding protein) family protein,SBP (S-ribonuclease binding protein) family protein (Similarity to S-ribonuclease binding protein) (Uncharacterized protein At5g47050) locus:2035564;,locus:2171042; AT1G32740,AT5G47050 RING NA NA NA NA NA NA NA ENOG411DYV6 F24K9.26 Q9CAW9,A0A1I9LSS1 Q9CAW9_ARATH,A0A1I9LSS1_ARATH At3g11590/F24K9_26 (Golgin family A protein) (Uncharacterized protein F24K9.26),Golgin family A protein 69686,52361 At3g11590/F24K9_26 (Golgin family A protein) (Uncharacterized protein F24K9.26),Golgin family A protein plasma membrane [GO:0005886] locus:2080792; AT3G11590 NA Os05g0420900 protein,Os02g0506100 protein,Os04g0382800 protein Q6L4Y8,A0A0P0VJD3,A0A0P0W9W5 Q6L4Y8_ORYSJ,A0A0P0VJD3_ORYSJ,A0A0P0W9W5_ORYSJ Os05g0420900 OSJNBb0092E21.6 OSNPB_050420900,Os02g0506100 OSNPB_020506100,Os04g0382800 OSNPB_040382800 ENOG411E6MV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OJ991214_12.5 protein (Os04g0415000 protein) (cDNA clone:002-148-F04, full insert sequence) Q7XTG2 Q7XTG2_ORYSJ Os04g0415000 Os04g0415000 OJ991214_12.5 OsJ_14750 OSNPB_040415000 ENOG411E6MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0554800 protein (cDNA, clone: J075146H05, full insert sequence) Q69ST7 Q69ST7_ORYSJ Os02g0554800 Os02g0554800 OSNPB_020554800 P0470G10.24 ENOG411E6MT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os08g0120900 protein (cDNA clone:002-183-F03, full insert sequence),Os08g0121100 protein,Os08g0121275 protein,Os08g0121250 protein Q6YPE9,A0A0P0XBR3,A0A0P0XBJ1,A0A0P0XBZ0 Q6YPE9_ORYSJ,A0A0P0XBR3_ORYSJ,A0A0P0XBJ1_ORYSJ,A0A0P0XBZ0_ORYSJ Os08g0120900 OSJNBa0091F23.2 Os08g0120900 B1203H11.17 OsJ_25858 OSNPB_080120900,Os08g0121100 OSNPB_080121100,Os08g0121275 OSNPB_080121275,Os08g0121250 OSNPB_080121250 ENOG411E6MU WRKY50 Q8VWQ5 WRK50_ARATH Probable WRKY transcription factor 50 (WRKY DNA-binding protein 50) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 19291 Probable WRKY transcription factor 50 (WRKY DNA-binding protein 50) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response to fungus [GO:0050832]; jasmonic acid mediated signaling pathway [GO:0009867]; transcription, DNA-templated [GO:0006351] locus:2179739; AT5G26170 WRKY NA NA NA NA NA NA NA ENOG411E6MR Q9SA19 Q9SA19_ARATH At1g31240 (Bromodomain transcription factor) (F28K20.20) (Uncharacterized protein At1g31240) 30962 At1g31240 (Bromodomain transcription factor) (F28K20.20) (Uncharacterized protein At1g31240) protein heterodimerization activity [GO:0046982] locus:2197530; AT1G31240 BTP NA NA NA NA NA NA NA ENOG411E6MP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif 2 Protein MEI2-like 7 (OML7) (MEI2-like protein 7) Q6ET49 OML7_ORYSJ OML7 Os02g0157900 LOC_Os02g06320 B1103G11.10 P0419H03.30 FUNCTION: Probable RNA-binding protein that may play a role in growth regulation. {ECO:0000250}. ENOG411E6MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os02g0751300 protein Q6Z8K0 Q6Z8K0_ORYSJ Os02g0751300 Os02g0751300 OSNPB_020751300 P0431B06.28 ENOG411E6MY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) Os04g0461300 protein,Os01g0903800 protein (Fragment),Os03g0834466 protein B9FFJ7,A0A0P0VBS2,A0A0P0W5T9 B9FFJ7_ORYSJ,A0A0P0VBS2_ORYSJ,A0A0P0W5T9_ORYSJ Os04g0461300 OsJ_15063 OSNPB_040461300,Os01g0903800 OSNPB_010903800,Os03g0834466 OSNPB_030834466 ENOG411E6MF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411E6MG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0110300 protein) (cDNA clone:001-208-G02, full insert sequence) (cDNA clone:J013056G16, full insert sequence) (cDNA clone:J013082M21, full insert sequence) Q10SV0 Q10SV0_ORYSJ Os03g0110300 LOC_Os03g01960 Os03g0110300 OSNPB_030110300 ENOG411E6ME GASA1 P46689,F4I0N7 GASA1_ARATH,F4I0N7_ARATH Gibberellin-regulated protein 1 (GAST1 protein homolog 1),GAST1 protein homolog 1 FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. 10745,10646 Gibberellin-regulated protein 1 (GAST1 protein homolog 1),GAST1 protein homolog 1 cell wall [GO:0005618]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; gibberellic acid mediated signaling pathway [GO:0009740]; response to abscisic acid [GO:0009737]; response to brassinosteroid [GO:0009741]; response to gibberellin [GO:0009739]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in flower buds, style, stamen filaments, vasculature of sepals, flower abscission zone and green siliques. Lower levels seen in the root phloem, cotyledons and vasculature of rosette leaves. {ECO:0000269|PubMed:10849358, ECO:0000269|PubMed:17284469}. locus:2005634; AT1G75750 gast1 protein homolog 1 NA NA NA NA NA NA NA ENOG411E6MM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stigma-specific protein Stig1 Os01g0248000 protein (cDNA clone:J033050N08, full insert sequence) Q5NAK8 Q5NAK8_ORYSJ Os01g0248000 Os01g0248000 OsJ_01097 OSJNBa0004G10.41 OSNPB_010248000 P0034C11.17 ENOG411E6MK Q9FN16 Q9FN16_ARATH At5g67350 34140 At5g67350 locus:2158177; AT5G67350 NA NA NA NA NA NA NA NA ENOG411E6MI Q9ZVC6 Q9ZVC6_ARATH At2g27140 (Expressed protein) (HSP20-like chaperones superfamily protein) 25118 At2g27140 (Expressed protein) (HSP20-like chaperones superfamily protein) integral component of membrane [GO:0016021]; membrane [GO:0016020] locus:2045144; AT2G27140 Heat shock family protein NA NA NA NA NA NA NA ENOG411E6M6 Q9FPH2 Q9FPH2_ARATH At5g02160 (Transmembrane protein) (Uncharacterized protein At5g02160/T7H20_210) 13378 At5g02160 (Transmembrane protein) (Uncharacterized protein At5g02160/T7H20_210) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2185128; AT5G02160 NA Os05g0110100 protein (cDNA clone:J013095J12, full insert sequence) (cDNA clone:J023077M04, full insert sequence) Q65XW5 Q65XW5_ORYSJ Os05g0110100 Os05g0110100 OsJ_16850 OSNPB_050110100 P0016H04.3 ENOG411E6M7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ATPase H transporting lysosomal 9kDa V0 subunit e1 NA NA NA NA NA NA NA ENOG411E6M4 MJK13.8 Q1G3W0,Q9LDR3 Q1G3W0_ARATH,Q9LDR3_ARATH Transcription factor TFIIIC, tau55-related protein,At3g15420 (MJK13.8 protein) (Transcription factor TFIIIC, tau55-related protein) (Uncharacterized protein At3g15420) 11220,11970 Transcription factor TFIIIC, tau55-related protein,At3g15420 (MJK13.8 protein) (Transcription factor TFIIIC, tau55-related protein) (Uncharacterized protein At3g15420) locus:4010713609;,locus:2090121; AT1G80745,AT3G15420 Pfam:TFIIIC_subunit OSJNBa0074L08.16 protein (OSJNBa0081C01.4 protein) (Os04g0530000 protein) (cDNA clone:J013052P20, full insert sequence) Q7X8F2 Q7X8F2_ORYSJ Os04g0530000 Os04g0530000 OsJ_15556 OSJNBa0074L08.16 OSJNBa0081C01.4 OSNPB_040530000 ENOG411E6M5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os06g0671600 protein Q652I9 Q652I9_ORYSJ Os06g0671600 OsJ_22327 OSJNBa0032M14.11 OSNPB_060671600 P0485A07.21 ENOG411E6M2 Q8LF87 Q8LF87_ARATH Cryptic loci regulator (Uncharacterized protein At3g27520) (Uncharacterized protein At3g27520/MMJ24_6) 22847 Cryptic loci regulator (Uncharacterized protein At3g27520) (Uncharacterized protein At3g27520/MMJ24_6) locus:2091428; AT3G27520 NA NA NA NA NA NA NA NA ENOG411E6M3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ELF protein Uncharacterized protein,Os08g0376900 protein (Fragment) Q35962,A0A0P0XFC8 Q35962_ORYSJ,A0A0P0XFC8_ORYSJ orf284,Os08g0376900 OSNPB_080376900 ENOG411E6M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Embryo-specific protein 3 (ATS3) Dehydration stress-induced protein (Dehydration stress-induced protein, putative, expressed) (Os10g0361000 protein) (cDNA clone:001-017-F11, full insert sequence),Os10g0361300 protein (Os10g0361350 protein),Os10g0361900 protein Q9AUN8,A3C3Z5,A0A0P0XT82 Q9AUN8_ORYSJ,A3C3Z5_ORYSJ,A0A0P0XT82_ORYSJ OSJNBa0058E19.13 LOC_Os10g21670 Os10g0361000 OsJ_31224 OSNPB_100361000,Os10g0361300 Os10g0361350 OsJ_31227 OSNPB_100361300,Os10g0361900 OSNPB_100361900 ENOG411E6M9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os12g0115600 protein (Zinc finger, C3HC4 type family protein, expressed),Os11g0116200 protein Q2QYK7,A0A0P0XYB8 Q2QYK7_ORYSJ,A0A0P0XYB8_ORYSJ Os12g0115600 LOC_Os12g02350 OsJ_34999 OSNPB_120115600,Os11g0116200 OSNPB_110116200 ENOG411EMJD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0665900 protein (cDNA clone:J023126G14, full insert sequence) Q0D3U1 Q0D3U1_ORYSJ Os07g0665900 Os07g0665900 OSNPB_070665900 ENOG411ECYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Os06g0582600 protein (Putative cysteine proteinase) (cDNA clone:J013106H06, full insert sequence) Q5VP99 Q5VP99_ORYSJ Os06g0582600 OSNPB_060582600 P0498C03.23 ENOG411ECYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3595) NA NA NA NA NA NA NA ENOG411ECYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411ECYF BGLU33 O48779 BGL33_ARATH Beta-glucosidase 33 (AtBGLU33) (EC 3.2.1.21) ARA:AT2G32860-MONOMER;MetaCyc:MONOMER-19205; R-ATH-189085; 3.2.1.21 70190 Beta-glucosidase 33 (AtBGLU33) (EC 3.2.1.21) beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657] locus:2059385; AT2G32860 beta glucosidase 33 NA NA NA NA NA NA NA ENOG411ECYE PDCB1 Q9FNQ2 PDCB1_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 1 (AtPDCB1) (Glucan endo-1,3-beta-glucosidase-like protein 2) FUNCTION: Able to bind (1->3)-beta-D-glucans (laminarin). Probably involved in cell-to-cell trafficking regulation. {ECO:0000269|PubMed:19223515}. MISCELLANEOUS: Overexpression of PDCB1 results in callose accumulation and decreased plasmodesmal molecular diffusion. 20365 PLASMODESMATA CALLOSE-BINDING PROTEIN 1 (AtPDCB1) (Glucan endo-1,3-beta-glucosidase-like protein 2) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; (1->3)-beta-D-glucan binding [GO:0001872]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; callose deposition in cell wall [GO:0052543] TISSUE SPECIFICITY: Expressed in the shoot apical region and in young leaves but also detected in the laminar and vasculature of mature leaves. {ECO:0000269|PubMed:19223515}. locus:2159436; AT5G61130 plasmodesmata callose-binding protein 1 NA NA NA NA NA NA NA ENOG411ECYX ML3 Q9SVV9 AML3_ARATH Protein MEI2-like 3 (AML3) (MEI2-like protein 3) DISRUPTION PHENOTYPE: Early flowering. {ECO:0000269|PubMed:15720729}. No visible phenotype. FUNCTION: Probable RNA-binding protein that plays a role in meiosis and vegetative growth. {ECO:0000269|PubMed:15720729, ECO:0000269|PubMed:16473967}. 84571 Protein MEI2-like 3 (AML3) (MEI2-like protein 3) nucleus [GO:0005634]; RNA binding [GO:0003723]; meiotic cell cycle [GO:0051321]; positive regulation of growth [GO:0045927]; positive regulation of meiotic nuclear division [GO:0045836] DEVELOPMENTAL STAGE: Expressed in the embryo at the heart and torpedo stages. {ECO:0000269|PubMed:15356386}. locus:2117706; AT4G18120 RNA recognition motif 2 NA NA NA NA NA NA NA ENOG411ECYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411ECYW F12E4_180,F15G16.110 Q9LZE5,Q9M366,A0A1P8BEZ1 Q9LZE5_ARATH,Q9M366_ARATH,A0A1P8BEZ1_ARATH Anthranilate phosphoribosyltransferase-like protein (Ca2+dependent plant phosphoribosyltransferase family protein),Ca2+dependent plant phosphoribosyltransferase family protein (Uncharacterized protein F15G16.110),Ca2+dependent plant phosphoribosyltransferase family protein 85042,90769,62855 Anthranilate phosphoribosyltransferase-like protein (Ca2+dependent plant phosphoribosyltransferase family protein),Ca2+dependent plant phosphoribosyltransferase family protein (Uncharacterized protein F15G16.110),Ca2+dependent plant phosphoribosyltransferase family protein integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],transferase activity, transferring glycosyl groups [GO:0016757] locus:504955202;,locus:2076725; AT5G03435,AT3G61720 Ca2 dependent plant phosphoribosyltransferase family protein NA NA NA NA NA NA NA ENOG411ECY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: leucine Rich Repeat NA NA NA NA NA NA NA ENOG411ECY8 CRRSP24,CRRSP10,CRRSP23,CRRSP61,CRRSP22,CRRSP25 Q9LRL4,Q9SIP6,Q9LRL6,Q9M2I5,Q9LRL7,Q9LRL2,A0A1I9LLK8 CRR24_ARATH,CRR10_ARATH,CRR23_ARATH,CRR61_ARATH,CRR22_ARATH,CRR25_ARATH,A0A1I9LLK8_ARATH Putative cysteine-rich repeat secretory protein 24,Putative cysteine-rich repeat secretory protein 10,Putative cysteine-rich repeat secretory protein 23,Putative cysteine-rich repeat secretory protein 61,Putative cysteine-rich repeat secretory protein 22,Putative cysteine-rich repeat secretory protein 25,Receptor protein kinase-like protein 29619,29137,29577,29474,31491,29073,20692 Putative cysteine-rich repeat secretory protein 24,Putative cysteine-rich repeat secretory protein 10,Putative cysteine-rich repeat secretory protein 23,Putative cysteine-rich repeat secretory protein 61,Putative cysteine-rich repeat secretory protein 22,Putative cysteine-rich repeat secretory protein 25,Receptor protein kinase-like protein extracellular region [GO:0005576],kinase activity [GO:0016301] locus:2065878;,locus:2830202;,locus:2085470; AT3G21960,AT2G31620,AT3G21945,AT3G58310,AT3G21940,AT3G21965 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ECY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MaoC like domain NA NA NA NA NA NA NA ENOG411ECY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECY0 MNJ7.2 Q9FGL4,Q5U1F1 Q9FGL4_ARATH,Q5U1F1_ARATH At5g47440 (Auxin canalization protein (DUF828)),At4g17350 (Auxin canalization protein (DUF828)) 44934,44529 At5g47440 (Auxin canalization protein (DUF828)),At4g17350 (Auxin canalization protein (DUF828)) locus:2168943;,locus:2130888; AT5G47440,AT4G17350 Plant pleckstrin homology-like region NA NA NA NA NA NA NA ENOG411ECY7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase NA NA NA NA NA NA NA ENOG411ECY6 BHLH34,bHLH34 Q9LTC7,A0A1I9LTF0 BH034_ARATH,A0A1I9LTF0_ARATH Transcription factor bHLH34 (Basic helix-loop-helix protein 34) (AtbHLH34) (bHLH 34) (Transcription factor EN 135) (bHLH transcription factor bHLH034),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 35577,32338 Transcription factor bHLH34 (Basic helix-loop-helix protein 34) (AtbHLH34) (bHLH 34) (Transcription factor EN 135) (bHLH transcription factor bHLH034),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2086198; AT3G23210 Basic helix-loop-helix NA NA NA NA NA NA NA ENOG411ECY5 Q8GY73 Q8GY73_ARATH At2g42950 (Magnesium transporter CorA-like family protein) (Uncharacterized protein At2g42950) 56979 At2g42950 (Magnesium transporter CorA-like family protein) (Uncharacterized protein At2g42950) integral component of membrane [GO:0016021]; membrane [GO:0016020]; metal ion transmembrane transporter activity [GO:0046873]; cation transmembrane transport [GO:0098655] locus:2045575; AT2G42950 CorA-like Mg2+ transporter protein NA NA NA NA NA NA NA ENOG411ECY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EA1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Respiratory burst NADPH oxidase NA NA NA NA NA NA NA ENOG411EA1N LECRK18 Q9LSR9 LRK18_ARATH L-type lectin-domain containing receptor kinase I.8 (LecRK-I.8) (EC 2.7.11.1) DISRUPTION PHENOTYPE: Increased susceptibility to the fungus Alternaria brassicicola. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic fungus Alternaria brassicicola. {ECO:0000269|PubMed:25083911}. 2.7.11.1 72388 L-type lectin-domain containing receptor kinase I.8 (LecRK-I.8) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; defense response to fungus [GO:0050832] locus:2144025; AT5G60280 lectin protein kinase family NA NA NA NA NA NA NA ENOG411EA1I Q9LPU9,Q9M2C3,Q9M2C0,Q9SRD3 VITH1_ARATH,VITH3_ARATH,VITH4_ARATH,VITH2_ARATH Vacuolar iron transporter homolog 1 (Protein NODULIN-LIKE 1),Vacuolar iron transporter homolog 3 (Protein NODULIN-LIKE 3),Vacuolar iron transporter homolog 4 (Protein NODULIN-LIKE 4),Vacuolar iron transporter homolog 2 (Protein NODULIN-LIKE 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but decreased accumulation of iron in the root and increased accumulation in the shoot when grown under high iron concentration. {ECO:0000269|PubMed:21411332}. FUNCTION: Probable vacuolar iron transporter that may be involved in the regulation of iron distribution throughout the plant. {ECO:0000250}.,FUNCTION: Probable vacuolar iron transporter that may be involved in the regulation of iron distribution throughout the plant. {ECO:0000269|PubMed:21411332}. 21030,21192,20944,20585 Vacuolar iron transporter homolog 1 (Protein NODULIN-LIKE 1),Vacuolar iron transporter homolog 3 (Protein NODULIN-LIKE 3),Vacuolar iron transporter homolog 4 (Protein NODULIN-LIKE 4),Vacuolar iron transporter homolog 2 (Protein NODULIN-LIKE 2) integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; intracellular sequestering of iron ion [GO:0006880]; manganese ion transmembrane transport [GO:0071421]; response to iron ion [GO:0010039],integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to iron ion [GO:0071281]; intracellular sequestering of iron ion [GO:0006880]; manganese ion transmembrane transport [GO:0071421]; response to iron ion [GO:0010039],integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; iron ion transmembrane transporter activity [GO:0005381]; manganese ion transmembrane transporter activity [GO:0005384]; cellular manganese ion homeostasis [GO:0030026]; cellular response to iron ion [GO:0071281]; intracellular sequestering of iron ion [GO:0006880]; manganese ion transmembrane transport [GO:0071421] TISSUE SPECIFICITY: Expressed in the vascular bundles of the shoot and the stele of the root. Expressed in inflorescences and at lower levels in leaves. {ECO:0000269|PubMed:17028341, ECO:0000269|PubMed:21411332}.,TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences. {ECO:0000269|PubMed:17028341}. locus:2199572;,locus:2080193;,locus:2080213;,locus:2030091; AT1G21140,AT3G43630,AT3G43660,AT1G76800 VIT family NA NA NA NA NA NA NA ENOG411EA1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0646300 protein B9FNG0 B9FNG0_ORYSJ Os11g0646300 OsJ_17766 OSNPB_110646300 ENOG411EA1K F4IB75,F4IB76 F4IB75_ARATH,F4IB76_ARATH Regulator of Vps4 activity in the MVB pathway protein,Leucine-rich repeat protein kinase family protein R-ATH-6798695; 92198,98678 Regulator of Vps4 activity in the MVB pathway protein,Leucine-rich repeat protein kinase family protein protein transport [GO:0015031],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2195840;,locus:2195855; AT1G51900,AT1G51910 STYKc NA NA NA NA NA NA NA ENOG411EA1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclic nucleotide-binding domain Os08g0254600 protein A0A0P0XDG1 A0A0P0XDG1_ORYSJ Os08g0254600 OSNPB_080254600 ENOG411EA1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF793) NA NA NA NA NA NA NA ENOG411EA1G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os08g0454266 protein,Os04g0597150 protein,Os02g0175302 protein B9G186,B9FC94,A0A0P0VFG5 B9G186_ORYSJ,B9FC94_ORYSJ,A0A0P0VFG5_ORYSJ Os08g0454266 OsJ_27549 OSNPB_080454266,Os04g0597150 OsJ_16008 OSNPB_040597150,Os02g0175302 OSNPB_020175302 ENOG411EA1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EA1A Q7Y227,Q5BPR8 Q7Y227_ARATH,Q5BPR8_ARATH At3g56320 (PAP/OAS1 substrate-binding domain superfamily) (Uncharacterized protein At3g56320),Nucleotidyltransferase family protein 66962,55904 At3g56320 (PAP/OAS1 substrate-binding domain superfamily) (Uncharacterized protein At3g56320),Nucleotidyltransferase family protein integral component of membrane [GO:0016021]; nucleotidyltransferase activity [GO:0016779],nucleotidyltransferase activity [GO:0016779] locus:2078426;,locus:2061868; AT3G56320,AT2G40520 Nucleotidyltransferase domain NA NA NA NA NA NA NA ENOG411EA1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF Os10g0175600 protein A0A0N7KRI2 A0A0N7KRI2_ORYSJ Os10g0175600 OSNPB_100175600 ENOG411EA1Y MXC20.16,MRB17.5,MCO15.22,MDK4.15,MWJ3.5,MWJ3.7,MDK4.14,MXC20.17,MRB17.6 Q9FLW8,Q9LSR3,Q9FK18,Q9LSR0,Q9FIU9,Q9FLN7,Q9FL67,Q9FK17,Q9LVQ3,Q9LDH8,Q9FL68,Q9FLW7,Q9FIU8,F4J8Y4 Q9FLW8_ARATH,Q9LSR3_ARATH,Q9FK18_ARATH,Q9LSR0_ARATH,Q9FIU9_ARATH,Q9FLN7_ARATH,Q9FL67_ARATH,Q9FK17_ARATH,Q9LVQ3_ARATH,Q9LDH8_ARATH,Q9FL68_ARATH,Q9FLW7_ARATH,Q9FIU8_ARATH,F4J8Y4_ARATH Expressed protein,Emb|CAB89038.1,Uncharacterized protein 39690,10170,40009,41257,39960,40321,39703,40495,25814,41162,41037,40352,40036,18876 Expressed protein,Emb|CAB89038.1,Uncharacterized protein locus:2176922;,locus:2147309;,locus:2154212;,locus:2147264;,locus:2172114;,locus:2161595;,locus:2162600;,locus:2154222;,locus:2176630;,locus:2176610;locus:2832725;,locus:2162590;,locus:2176932;,locus:2172124;,locus:2090320; AT5G52930,AT5G54420,AT5G53230,AT5G54450,AT5G54550,AT5G55270,AT5G54330,AT5G53240,AT5G55870,AT5G55880AT5G55890;,AT5G54320,AT5G52940,AT5G54560,AT3G25200 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411EA1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EA1U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA NA NA NA NA NA NA NA ENOG411EA1T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Probable glucomannan 4-beta-mannosyltransferase 3 (EC 2.4.1.32) (Cellulose synthase-like protein A3) (OsCslA3) (Glucomannan synthase) (Mannan synthase 3) Q67X45 CSLA3_ORYSJ CSLA3 Os06g0230100 LOC_Os06g12460 P0525F01.26 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q7PC76}. ENOG411EA1W O49421,O49420 FB238_ARATH,FBK86_ARATH F-box protein At4g19940,F-box/kelch-repeat protein At4g19930 47309,50425 F-box protein At4g19940,F-box/kelch-repeat protein At4g19930 plasma membrane [GO:0005886] locus:2119787;,locus:2119772; AT4G19940,AT4G19930 f-box family NA NA NA NA NA NA NA ENOG411EA1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MreB/Mbl protein Os01g0688900 protein A0A0P0V6T7 A0A0P0V6T7_ORYSJ Os01g0688900 OSNPB_010688900 ENOG411EA1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA1S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Oxysterol-binding protein NA NA NA NA NA NA NA ENOG411EA19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA18 T1G12.8 Q9SG11 Q9SG11_ARATH IQ-domain 15 (Putative calmodulin-binding protein; 34282-32701) (Uncharacterized protein F2K15.240) 40765 IQ-domain 15 (Putative calmodulin-binding protein; 34282-32701) (Uncharacterized protein F2K15.240) locus:2082946; AT3G49380 IQ-domain 15 NA NA NA NA NA NA NA ENOG411EA15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EA17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411EA11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 DNA binding domain NA NA NA NA NA NA NA ENOG411EA13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EHTV Q9MAS9 Q9MAS9_ARATH At1g04800 (F13M7.21 protein) (Glycine-rich protein) 18045 At1g04800 (F13M7.21 protein) (Glycine-rich protein) locus:2010682; AT1G04800 NA NA NA NA NA NA NA NA ENOG411EHTK Q8GYE6 Q8GYE6_ARATH Uncharacterized protein At1g21520 (Uncharacterized protein At1g21520/F24J8_4) 7371 Uncharacterized protein At1g21520 (Uncharacterized protein At1g21520/F24J8_4) endoplasmic reticulum [GO:0005783]; response to oxidative stress [GO:0006979] locus:2026992; AT1G21520 NA NA NA NA NA NA NA NA ENOG411EHTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF1771) Os01g0225100 protein A0A0P0UZU1 A0A0P0UZU1_ORYSJ Os01g0225100 OSNPB_010225100 ENOG411DQUT PAP28 Q9LU72 PPA28_ARATH Probable inactive purple acid phosphatase 28 45437 Probable inactive purple acid phosphatase 28 extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2175594; AT5G57140 inactive purple acid phosphatase Os06g0699200 protein (cDNA, clone: J100035N11, full insert sequence) B7FA26 B7FA26_ORYSJ Os06g0699200 OSNPB_060699200 ENOG411DQUR Q9SZE1 3HID1_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial (HIBADH-like) (EC 1.1.1.31) PATHWAY: Amino-acid degradation; L-valine degradation. ARA:AT4G29120-MONOMER; 1.1.1.31 35372 Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial (HIBADH-like) (EC 1.1.1.31) cytosol [GO:0005829]; mitochondrion [GO:0005739]; 3-hydroxyisobutyrate dehydrogenase activity [GO:0008442]; NAD binding [GO:0051287]; phosphogluconate dehydrogenase (decarboxylating) activity [GO:0004616]; valine catabolic process [GO:0006574] locus:2119921; AT4G29120 Shikimate / quinate 5-dehydrogenase Os01g0742300 protein (Putative D-threonine dehydrogenase) Q8LQ70 Q8LQ70_ORYSJ Os01g0742300 OSNPB_010742300 P0439E07.17 ENOG411DQUQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0550400 protein A0A0P0XXE1 A0A0P0XXE1_ORYSJ Os10g0550400 OSNPB_100550400 ENOG411E35D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 Expressed protein (Os03g0816700 protein) Q10BI3 Q10BI3_ORYSJ Os03g0816700 LOC_Os03g60210 OSNPB_030816700 ENOG411E35I O80813 YC20L_ARATH Ycf20-like protein Homozygotes exhibit a low nonphotochemical quenching phenotype. Also chlorophyll a+b content is higher than WT whereas the chlorophyll a/b ratio was smaller than WT. Morphologically WT under normal growth conditions. Fv/Fm is almost identical to WT as is the xanthophyll cycle pigment pool size.,Nonphotochemical quenching measurements were lower than either of the single mutants. Reduced non-photochemical quenching-K. Niyogi-2010 21397 Ycf20-like protein chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; nonphotochemical quenching [GO:0010196] locus:2206305; AT1G65420 Protein of unknown function (DUF565) Antigen receptor-like protein (Os09g0287500 protein) (cDNA clone:006-210-G07, full insert sequence),Os02g0233333 protein Q6EN61,A0A0P0VGX5 Q6EN61_ORYSJ,A0A0P0VGX5_ORYSJ Os09g0287500 OsJ_28696 OSNPB_090287500 P0453B09.17 P0663H05.33,Os02g0233333 OSNPB_020233333 ENOG411E354 BHLH84,BHLH85 Q7XHI9,Q84WK0,F4IGG9 BH084_ARATH,BH085_ARATH,F4IGG9_ARATH Transcription factor bHLH84 (Basic helix-loop-helix protein 84) (AtbHLH84) (bHLH 84) (bHLH transcription factor bHLH084),Transcription factor bHLH85 (Basic helix-loop-helix protein 85) (AtbHLH85) (bHLH 85) (Transcription factor EN 115) (bHLH transcription factor bHLH085),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 36500,38770,38054 Transcription factor bHLH84 (Basic helix-loop-helix protein 84) (AtbHLH84) (bHLH 84) (bHLH transcription factor bHLH084),Transcription factor bHLH85 (Basic helix-loop-helix protein 85) (AtbHLH85) (bHLH 85) (Transcription factor EN 115) (bHLH transcription factor bHLH085),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; cell growth [GO:0016049]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; root hair initiation [GO:0048766]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; pollen development [GO:0009555] TISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}. locus:2118934;,locus:2046966; AT2G14760,AT4G33880 Transcription factor NA NA NA NA NA NA NA ENOG411DWH9 PNSL5 Q9ASS6 PNSL5_ARATH Photosynthetic NDH subunit of lumenal location 5, chloroplastic (Cyclophilin of 20 kDa 2) (Peptidyl-prolyl cis-trans isomerase CYP20-2) (PPIase CYP20-2) (EC 5.2.1.8) (Rotamase CYP20-2) (Thylakoid lumen PPIase of 20 kDa) (TLP20) This mutant had a normal phenotype when grown under standard conditions. The chl/leaf area ratio in this mutant and WT plants were 20.1+/- 0.8 and 19.0 +/- 0.7 respectively. The average chl a/b ratios in this mutant and WT plants were 3.7 +/- 0.0 and 3.6 +/- 0.1 respectively. The levels of representative proteins from various complexes including photosystem (PS)I PSII and cytb6f were not altered cyp20-2 thylakoid membranes. However there was a ~20% reduction in the amount of NDHH a subunit of the NAD(P)H dehydrogenase complex. There was a slight increase in the photochemical efficiency of PSII in constant growth light conditions and following a two-hour exposure to high light. An marker of NAD(P)H dehydrogenase-mediated reduction of plastoquinone in the dark measured through the post-illumination rise in chl fluorescence was also moderately decreased in this mutant.,This mutant had a normal phenotype when grown under standard conditions. The chl/leaf area ratio in this mutant and WT plants were 18.1+/- 0.6 and 19.0 +/- 0.7 respectively. The average chl a/b ratios in this mutant and WT plants were 3.7 +/- 0.0 and 3.6 +/- 0.1 respectively. The levels of representative proteins from various complexes including photosystem (PS)I PSII and cytb6f were not altered cyp20-2 thylakoid membranes. However there was a ~20% reduction in the amount of NDHH a subunit of the NAD(P)H dehydrogenase complex. There was a slight increase in the photochemical efficiency of PSII in constant growth light conditions. An marker of NAD(P)H dehydrogenase-mediated reduction of plastoquinone in the dark measured through the post-illumination rise in chl fluorescence was also moderately decreased in this mutant. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (Probable). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Responsible, with FKBP13, for all PPIase activity observed in thylakoid lumen. Modulates the conformation of BZR1, which regulates flowering (PubMed:16765949, PubMed:23897924). {ECO:0000269|PubMed:16765949, ECO:0000269|PubMed:23897924, ECO:0000305}. 5.2.1.8 28306 Photosynthetic NDH subunit of lumenal location 5, chloroplastic (Cyclophilin of 20 kDa 2) (Peptidyl-prolyl cis-trans isomerase CYP20-2) (PPIase CYP20-2) (EC 5.2.1.8) (Rotamase CYP20-2) (Thylakoid lumen PPIase of 20 kDa) (TLP20) chloroplast [GO:0009507]; chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein histidine kinase binding [GO:0043424]; NAD(P)H dehydrogenase complex assembly [GO:0010275]; protein folding [GO:0006457]; transport [GO:0006810] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15051864}. locus:2179822; AT5G13120 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q75M32 Q75M32_ORYSJ Os05g0103200 Os05g0103200 OsJ_16789 OSNPB_050103200 P0668H12.6 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411DWH7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411DWH6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein CHUP1 chloroplastic-like Os08g0129600 protein (Fragment) A0A0P0XBY0 A0A0P0XBY0_ORYSJ Os08g0129600 OSNPB_080129600 ENOG411DWH5 XTH27,XTH28 Q8LDS2,Q38909 XTH27_ARATH,XTH28_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 27 (At-XTH27) (XTH-27) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 28 (At-XTH28) (XTH-28) (EC 2.4.1.207) DISRUPTION PHENOTYPE: In xth27-1 and xth27-2, short-shaped tracheary elements in tertiary veins, reduced number of tertiary veins in the first leaf, and yellow lesion-mimic spots in mature rosette leaves. {ECO:0000269|PubMed:15860011}. The developing flowers of atxth28 mutant showed has characteristic phenotypes a significantly lower elongation ratio of the stamen at the pollination stage an increased angle between the stamen and pistil and an aberrant orientation of anther dehiscence.As a result the capability for automatic self-pollination was decreased in the mutant. Abnormal stamen morphology; Reduced fertility-K. Nishitani-2009 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). Required for cell wall modification during the development of tracheary elements. {ECO:0000250, ECO:0000269|PubMed:15860011}.,FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}. MISCELLANEOUS: In contrast to group 1 and group 2 endotransglucosylase/hydrolase proteins, it may not contain the ligase activity, and may catalyze endohydrolysis xyloglucan polymers only. ARA:AT2G01850-MONOMER;,ARA:AT1G14720-MONOMER; 2.4.1.207; 2.4.1.207 38415,38252 Probable xyloglucan endotransglucosylase/hydrolase protein 27 (At-XTH27) (XTH-27) (EC 2.4.1.207),Probable xyloglucan endotransglucosylase/hydrolase protein 28 (At-XTH28) (XTH-28) (EC 2.4.1.207) apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; phloem or xylem histogenesis [GO:0010087]; xyloglucan metabolic process [GO:0010411],apoplast [GO:0048046]; cell wall [GO:0005618]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; fruit development [GO:0010154]; stamen filament development [GO:0080086]; xyloglucan metabolic process [GO:0010411] DEVELOPMENTAL STAGE: Accumulates in the immature tracheary elements of rosette leaves. Expressed in differentiating vasculature of the root, the hypocotyls, and the flower filaments, as well as in the anthers and the inner subepidermal layer of mature siliques. {ECO:0000269|PubMed:15860011}. TISSUE SPECIFICITY: Expressed in 7 day old seedlings, roots, hypocotyls, rosette leaves, internodes between nodes bearing axillary shoots, nodes bearing flowers, flower buds, anthers and siliques. {ECO:0000269|PubMed:10557219, ECO:0000269|PubMed:15860011}.,TISSUE SPECIFICITY: Expressed in 7 day old seedlings, roots, rosette leaves, internodes between nodes bearing axillary shoots, nodes bearing flowers, flower buds and siliques. {ECO:0000269|PubMed:10557219}. locus:2059728;,locus:2006857; AT2G01850,AT1G14720 Xyloglucan endotransglucosylase hydrolase protein Endoxyloglucan transferase-like protein (Os09g0395600 protein) (cDNA clone:001-016-E08, full insert sequence),Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207),Os09g0395600 protein,Os10g0117000 protein Q6H490,Q10PC7,A0A0P0XLS9,A0A0P0XR14 Q6H490_ORYSJ,Q10PC7_ORYSJ,A0A0P0XLS9_ORYSJ,A0A0P0XR14_ORYSJ B1040D06.30-1 Os09g0395600 OSNPB_090395600,Os03g0239000 LOC_Os03g13570 Os03g0239000 OsJ_10080 OSNPB_030239000,Os09g0395600 OSNPB_090395600,Os10g0117000 OSNPB_100117000 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DWH4 A0A1I9LPU2,Q9C6F0,F4J939,A0A1I9LPN5,A0A1I9LPT7,A0A1I9LPU0,A0A1I9LPU3,F4J937,F4HYA5,A0A1I9LPT9,A0A1I9LPU1,F4J938,A0A1I9LPT8 A0A1I9LPU2_ARATH,Q9C6F0_ARATH,F4J939_ARATH,A0A1I9LPN5_ARATH,A0A1I9LPT7_ARATH,A0A1I9LPU0_ARATH,A0A1I9LPU3_ARATH,F4J937_ARATH,F4HYA5_ARATH,A0A1I9LPT9_ARATH,A0A1I9LPU1_ARATH,F4J938_ARATH,A0A1I9LPT8_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At1g35190) (Hyoscyamine 6-dioxygenase hydroxylase, putative) ARA:AT1G35190-MONOMER; 21817,37635,28476,35513,25526,21484,25992,32475,35074,36686,33737,37611,20683 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (At1g35190) (Hyoscyamine 6-dioxygenase hydroxylase, putative) oxidoreductase activity [GO:0016491],dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2203325;,locus:2075130;,locus:2078241;,locus:2075125; AT1G35190,AT3G46500,AT3G46480,AT3G46490 )-oxidoreductase Os01g0188100 protein (Putative oxidoreductase) (cDNA, clone: J100072I17, full insert sequence) Q5SND7 Q5SND7_ORYSJ Os01g0188100 OSNPB_010188100 P0512G09.18 P0695A04.27 ENOG411DWH3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Region found in RelA / SpoT proteins Os07g0613000 protein (Fragment) Q0D4Q6 Q0D4Q6_ORYSJ Os07g0613000 Os07g0613000 OSNPB_070613000 ENOG411DWH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K-box region NA NA NA NA NA NA NA ENOG411DWH0 MICU Q9SZ45 MICU_ARATH Calcium uptake protein, mitochondrial (Mitochondrial calcium uniporter) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:26530087}. FUNCTION: Calcium-binding protein maintaining matrix calcium levels at low concentration. Regulates mitochondrial calcium dynamics in planta by restricting influx. {ECO:0000269|PubMed:26530087}. R-ATH-8949215; 55415 Calcium uptake protein, mitochondrial (Mitochondrial calcium uniporter) mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; calcium ion binding [GO:0005509]; calcium ion transport [GO:0006816]; negative regulation of mitochondrial calcium ion concentration [GO:0051562] TISSUE SPECIFICITY: Expressed in both green and non-green tissues, including roots, shoots, floral buds and pollen. {ECO:0000269|PubMed:26530087}. locus:2116662; AT4G32060 Calcium uptake protein 1 Os04g0502900 protein,Os02g0613000 protein,Os04g0502900 protein (Fragment) Q0JBY6,Q0DZK7,A0A0P0WBY9 Q0JBY6_ORYSJ,Q0DZK7_ORYSJ,A0A0P0WBY9_ORYSJ Os04g0502900 Os04g0502900 OSNPB_040502900,Os02g0613000 Os02g0613000 OSNPB_020613000,Os04g0502900 OSNPB_040502900 ENOG411DWHZ Q93VQ6 Q93VQ6_ARATH At1g07080/F10K1_15 (Thioredoxin superfamily protein) R-ATH-2132295; 29698 At1g07080/F10K1_15 (Thioredoxin superfamily protein) vacuole [GO:0005773] locus:2007407; AT1G07080 lysosomal thiol Gamma interferon inducible lysosomal thiol reductase family protein, expressed (Os03g0295800 protein) (cDNA clone:001-206-F01, full insert sequence),Gamma interferon inducible lysosomal thiol reductase family protein, expressed (Os03g0295800 protein) (cDNA clone:J023102J23, full insert sequence) Q10MT7,Q10MT8 Q10MT7_ORYSJ,Q10MT8_ORYSJ Os03g0295800 LOC_Os03g18454 OSNPB_030295800,Os03g0295800 LOC_Os03g18454 Os03g0295800 OSNPB_030295800 ENOG411DWHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion channel Potassium channel KAT3 Q5JM04 KAT3_ORYSJ Os01g0756700 LOC_Os01g55200 OJ1414_E05.9 FUNCTION: Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization (By similarity). {ECO:0000250}. ENOG411DWHX IQD5 F4J061 F4J061_ARATH IQ-domain 5 46899 IQ-domain 5 plasma membrane [GO:0005886] locus:2090409; AT3G22190 IQ calmodulin-binding motif domain containing protein expressed IQ calmodulin-binding motif family protein, expressed (Os03g0648300 protein) (cDNA clone:J013098A04, full insert sequence),IQ calmodulin-binding motif family protein, expressed (Os03g0787200 protein) (Putative calmodulin-binding protein),IQ calmodulin-binding motif family protein, expressed (Os12g0619000 protein) (cDNA clone:J033096B18, full insert sequence) Q10G08,Q6F3B1,Q2QM35 Q10G08_ORYSJ,Q6F3B1_ORYSJ,Q2QM35_ORYSJ Os03g0648300 LOC_Os03g44610 OSNPB_030648300,LOC_Os03g57330 Os03g0787200 OsJ_12870 OSJNBb0024J04.8 OSNPB_030787200,Os12g0619000 LOC_Os12g42430 Os12g0619000 OSNPB_120619000 ENOG411DWHW EIF4B2,EIF4B1 Q9SAD7,Q9LIN5 IF4B2_ARATH,IF4B1_ARATH Eukaryotic translation initiation factor 4B2 (AtTif4B2) (eIF4B2) (Protein SPONTANEOUS NECROTIC SPOTS),Eukaryotic translation initiation factor 4B1 (AtTif4B1) (eIF4B1) FUNCTION: Promotes the eIF4F and eIF4A RNA-dependent ATP-hydrolysis activity with different efficiency depending on mRNAs, thus providing mRNA discrimination during initiation of translation. {ECO:0000269|PubMed:19493973}. MISCELLANEOUS: Over-expression in sns-D leads to programmed cell death (PCD) in the leaves characterized by spontaneous necrotic spots on the rosette leaves under aseptic conditions. Embryo lethal when homozygote. {ECO:0000269|PubMed:22639576}. 59324,57720 Eukaryotic translation initiation factor 4B2 (AtTif4B2) (eIF4B2) (Protein SPONTANEOUS NECROTIC SPOTS),Eukaryotic translation initiation factor 4B1 (AtTif4B1) (eIF4B1) nucleus [GO:0005634]; mRNA binding [GO:0003729]; protein homodimerization activity [GO:0042803]; translation initiation factor activity [GO:0003743] locus:2031795;,locus:2079246; AT1G13020,AT3G26400 eukaryotic translation initiation factor Os04g0480100 protein (cDNA, clone: J100060F14, full insert sequence),Os02g0595800 protein (Putative eukaryotic translation initiation factor) B7FAA5,Q6ZI51 B7FAA5_ORYSJ,Q6ZI51_ORYSJ Os04g0480100 OSNPB_040480100,Os02g0595800 OJ1126_D09.32 OSNPB_020595800 ENOG411DWHV SWI3B Q84JG2 SWI3B_ARATH SWI/SNF complex subunit SWI3B (AtSWI3B) (Transcription regulatory protein SWI3B) DISRUPTION PHENOTYPE: Plants have pleiotropic developmental abnormalities including embryo development blocked at the early globular stage. {ECO:0000269|PubMed:16055636}. FUNCTION: Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. May play an essential role in the transition from the vegetative to the reproductive phase of development. May be a positive regulator of ABA signaling. {ECO:0000269|PubMed:12140326, ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636, ECO:0000269|PubMed:19033529}. 52411 SWI/SNF complex subunit SWI3B (AtSWI3B) (Transcription regulatory protein SWI3B) nucleus [GO:0005634]; SWI/SNF complex [GO:0016514]; DNA binding [GO:0003677]; chromatin remodeling [GO:0006338]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636}. locus:2051028; AT2G33610 SWI SNF complex subunit Os02g0194000 protein (Fragment) A0A0P0VFV4 A0A0P0VFV4_ORYSJ Os02g0194000 OSNPB_020194000 ENOG411DWHU A0A1P8BGS9,A0A1P8BGP0,A0A1P8BGS6,F4KGT1,F4KGT2,F4KGT3 A0A1P8BGS9_ARATH,A0A1P8BGP0_ARATH,A0A1P8BGS6_ARATH,F4KGT1_ARATH,F4KGT2_ARATH,F4KGT3_ARATH ATP synthase subunit B 38171,34910,34444,45810,45881,38099 ATP synthase subunit B locus:2145372; AT5G10320 NA Os04g0451100 protein (cDNA clone:002-115-E09, full insert sequence) Q0JCS8 Q0JCS8_ORYSJ Os04g0451100 Os04g0451100 OSNPB_040451100 ENOG411DWHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhamnose biosynthetic enzyme NA NA NA NA NA NA NA ENOG411DWHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os06g0137650 protein (Fragment),Os01g0583967 protein,Os01g0889950 protein Q10Q28,A0A0P0WS89,A0A0P0V4H7,A0A0P0VBF0 Q10Q28_ORYSJ,A0A0P0WS89_ORYSJ,A0A0P0V4H7_ORYSJ,A0A0P0VBF0_ORYSJ Os03g0212000 LOC_Os03g11350 OSNPB_030212000,Os06g0137650 OSNPB_060137650,Os01g0583967 OSNPB_010583967,Os01g0889950 OSNPB_010889950 ENOG411DWHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor NA NA NA NA NA NA NA ENOG411DWHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor NA NA NA NA NA NA NA ENOG411DWHP Q93Z37 BIG1E_ARATH Protein BIG GRAIN 1-like E FUNCTION: Involved in auxin transport. Regulator of the auxin signaling pathway. {ECO:0000250|UniProtKB:Q10R09}. 36327 Protein BIG GRAIN 1-like E plasma membrane [GO:0005886]; auxin transport [GO:0060918]; auxin-activated signaling pathway [GO:0009734]; positive regulation of auxin mediated signaling pathway [GO:0010929] locus:2033228; AT1G69160 NA NA NA NA NA NA NA NA ENOG411DWHN psaD1,PSAD2 Q9S7H1,Q9SA56 PSAD1_ARATH,PSAD2_ARATH Photosystem I reaction center subunit II-1, chloroplastic (Photosystem I 20 kDa subunit 1) (PSI-D1),Photosystem I reaction center subunit II-2, chloroplastic (Photosystem I 20 kDa subunit 2) (PSI-D2) FUNCTION: PsaD can form complexes with ferredoxin and ferredoxin-oxidoreductase in photosystem I (PS I) reaction center. PSAD may encode the ferredoxin-docking protein.,FUNCTION: PSAD can form complexes with ferredoxin and ferredoxin-oxidoreductase in photosystem I (PS I) reaction center. PSAD may encode the ferredoxin-docking protein (By similarity). {ECO:0000250}. MISCELLANEOUS: After Mass spectrometry, it is not clear if Ala-45 or Glu-46 is the N-terminus of the mature protein. ARA:MONOMER-1098;MetaCyc:MONOMER-1098; 22598,22307 Photosystem I reaction center subunit II-1, chloroplastic (Photosystem I 20 kDa subunit 1) (PSI-D1),Photosystem I reaction center subunit II-2, chloroplastic (Photosystem I 20 kDa subunit 2) (PSI-D2) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; photosystem I reaction center [GO:0009538]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; membrane [GO:0016020]; photosystem I reaction center [GO:0009538]; thylakoid [GO:0009579]; protein domain specific binding [GO:0019904]; photosynthesis [GO:0015979] locus:2140255;,locus:2007519; AT4G02770,AT1G03130 Photosystem I reaction center subunit Chloroplast photosystem I reaction center subunit II-like protein (Os08g0560900 protein) (Putative photosystem I reaction center subunit II, chloroplast (Photosystem I 20 kDa subunit) (PSI-D)) (cDNA clone:001-039-D04, full insert sequence) (cDNA clone:J013070L10, full insert sequence),Os08g0560900 protein (Fragment) Q84PB4,A0A0P0XIC1 Q84PB4_ORYSJ,A0A0P0XIC1_ORYSJ Os08g0560900 OsJ_28289 OSNPB_080560900 P0604E01.24,Os08g0560900 OSNPB_080560900 ENOG411DWHM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant-specific domain TIGR01615 family protein Os01g0747300 protein (Fragment) A0A0P0V855 A0A0P0V855_ORYSJ Os01g0747300 OSNPB_010747300 ENOG411DWHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein Os07g0140500 protein,Os11g0583300 protein,Os06g0250000 protein A3BGG4,A0A0P0Y3M6,A0A0P0WV11 A3BGG4_ORYSJ,A0A0P0Y3M6_ORYSJ,A0A0P0WV11_ORYSJ Os07g0140500 OsJ_23046 OSNPB_070140500,Os11g0583300 OSNPB_110583300,Os06g0250000 OSNPB_060250000 ENOG411DWHJ RNR1 Q9SJ20 RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit (EC 1.17.4.1) (Protein DEFECTIVE IN POLLEN DNA DEGRADATION 2) (Ribonucleoside-diphosphate reductase R1 subunit) (AtRNR1) DISRUPTION PHENOTYPE: Lethal when homozygous. RNAi-mediated knockdown causes severe developmental defects in seedlings failing to develop beyond the four-leaf stage. {ECO:0000269|PubMed:17346262}. Homozygous cls8-1 plants had crinkled leaves that showed slight yellowing at 4C (also apparent under normal growth conditions) Germination and cotyledon development are indistinguishable from wild type (Columbia) however the first developing true leaves appear bleached. Subsequent leaves emerge curled and ?ruffled? with bleached edges. The rosette leaves expand some become crinkled and show patches of white or pits on the surface. There is often a degree of asymmetry along the axis of the main vein with one half of the leaf failing to fully expand. The bleaching is localized to the petiole and the base of the leaf and extends along the edges of the leaf. As they continue to expand the leaves become greener although the crinkling remains. Following bolting the cauline leaves show similar characteristics to rosette leaves. Flowers produced by cls8-1 plants can be asymmetrical and the petals crinkled in appearance. Siliques grow to a normal size but are slightly pale in colour with patches of white and exhibit ?pits? like those present on the leaves. Root growth is reduced in cls8-1 compared with wild type by approximately 20%.,dominant mutation Cotyledons of heterozygous plants were pale and showed areas of bleaching. Homozygous plants had bleached cotyledons and at most produced two to four bleached leaves.,recessive mutant Leads to a moderately pale leaf phenotype. The cotyledons of these plants are green and indistinguishable from those of wild-type seedlings Short roots; Bleached to yellow leaf sections; Abnormal leaf and flower morphology; Few, large chloroplasts-G. Thorlby-2007 FUNCTION: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. R1 contains the binding sites for both substrates and allosteric effectors and carries out the actual reduction of the ribonucleotide. Ribonucleotide reductase (RNR) complex function is essential for efficient organellar DNA degradation in pollen. Involved in chloroplast division. {ECO:0000269|PubMed:10542051, ECO:0000269|PubMed:17346262, ECO:0000269|PubMed:22239102}. MISCELLANEOUS: Two distinct regulatory sites have been defined: one controls substrate specificity and the other regulates the overall catalytic activity. A substrate-binding catalytic site, located on R1, is formed only in the presence of the second subunit R2. PATHWAY: Genetic information processing; DNA replication. ARA:AT2G21790-MONOMER;MetaCyc:AT2G21790-MONOMER; R-ATH-499943; Glutathione metabolism (00480),Purine metabolism (00230),Pyrimidine metabolism (00240),Metabolic pathways (01100) 1.17.4.1 91816 Ribonucleoside-diphosphate reductase large subunit (EC 1.17.4.1) (Protein DEFECTIVE IN POLLEN DNA DEGRADATION 2) (Ribonucleoside-diphosphate reductase R1 subunit) (AtRNR1) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [GO:0004748]; deoxyribonucleoside triphosphate biosynthetic process [GO:0009202]; deoxyribonucleotide biosynthetic process [GO:0009263]; DNA replication [GO:0006260]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Highly expressed in actively growing tissues such as young leaves, shoot apices, inflorescences and carpels. Very low expression in cotyledons, adult and cauline leaves and senescent leaves. {ECO:0000269|PubMed:17346262}. locus:2052469; AT2G21790 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity) Ribonucleoside-diphosphate reductase (EC 1.17.4.1) Q5VRF5,Q6K848 Q5VRF5_ORYSJ,Q6K848_ORYSJ Os06g0168600 OsJ_20270 OSJNBa0033B09.19 OSNPB_060168600 P0680A03.40,RnrL2 Os02g0804900 OJ1548_F12.14 OsJ_08774 OSNPB_020804900 FUNCTION: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. {ECO:0000256|RuleBase:RU003410}. ENOG411DWHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family Os11g0261600 protein (Fragment),OSJNBb0089K24.3 protein (Os04g0121100 protein),Os04g0120350 protein,Os04g0121200 protein (Fragment),Os04g0121300 protein,Os04g0120100 protein,Os04g0120300 protein,Os04g0126600 protein (Fragment) Q0ITF8,Q7XT44,A0A0P0W6B4,A0A0P0W6V1,A0A0P0W6P0,A0A0P0W669,A0A0P0W6Q2,A0A0P0W6R0 Q0ITF8_ORYSJ,Q7XT44_ORYSJ,A0A0P0W6B4_ORYSJ,A0A0P0W6V1_ORYSJ,A0A0P0W6P0_ORYSJ,A0A0P0W669_ORYSJ,A0A0P0W6Q2_ORYSJ,A0A0P0W6R0_ORYSJ Os11g0261600 OSNPB_110261600,Os04g0121100 OsJ_13596 OSJNBb0089K24.3 OSNPB_040121100,Os04g0120350 OSNPB_040120350,Os04g0121200 OSNPB_040121200,Os04g0121300 OSNPB_040121300,Os04g0120100 OSNPB_040120100,Os04g0120300 OSNPB_040120300,Os04g0126600 OSNPB_040126600 ENOG411DWHH MSL3.12 Q8VYJ4,Q9FME2,F4K1Y4,F4J8X6,A0A178V9P2 Q8VYJ4_ARATH,Q9FME2_ARATH,F4K1Y4_ARATH,F4J8X6_ARATH,A0A178V9P2_ARATH AT3g25150/MJL12_9 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein),AT5g60980/MSL3_100 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Similarity to RNA-binding protein),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein,Nuclear transport factor 2 family protein 52875,49543,49415,64387,15414 AT3g25150/MJL12_9 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein),AT5g60980/MSL3_100 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein) (Similarity to RNA-binding protein),Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein,Nuclear transport factor 2 family protein intracellular [GO:0005622]; RNA binding [GO:0003723]; transport [GO:0006810],cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; response to abscisic acid [GO:0009737]; transport [GO:0006810],cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; mRNA binding [GO:0003729]; transport [GO:0006810],intracellular [GO:0005622]; transport [GO:0006810] locus:2173567;,locus:2090225; AT3G25150,AT5G60980 nuclear transport factor 2 (NTF2) family protein RNA recognition motif (RRM)-containing protein Os02g0497700 protein (Fragment),Os02g0497700 protein (Putative Ras-GTPase-activating protein binding protein 1) (cDNA clone:J023041O14, full insert sequence),OSJNBa0069D17.2 protein (Os04g0372800 protein) (cDNA clone:J033052F07, full insert sequence),Os03g0418800 protein (Fragment) Q0E129,Q6K925,Q7XVK1,A0A0P0VYT3 Q0E129_ORYSJ,Q6K925_ORYSJ,Q7XVK1_ORYSJ,A0A0P0VYT3_ORYSJ Os02g0497700 Os02g0497700 OSNPB_020497700,Os02g0497700 OJ1288_D09.22 OSNPB_020497700,Os04g0372800 OsJ_14477 OSJNBa0069D17.2 OSNPB_040372800,Os03g0418800 OSNPB_030418800 ENOG411DWHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ADF Putative actin-depolymerizing factor 8 (ADF-8) (OsADF8),Actin-depolymerizing factor 10 (ADF-10) (OsADF10),Os07g0297500 protein (Fragment) Q0D744,Q337A5,A0A0P0X4W9 ADF8_ORYSJ,ADF10_ORYSJ,A0A0P0X4W9_ORYSJ ADF8 Os07g0297500 LOC_Os07g20170 P0680C01.12,ADF10 Os10g0521100 LOC_Os10g37670 OsJ_32187 OSJNBb0018B10.29 OSJNBb0028C01.47,Os07g0297500 OSNPB_070297500 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (By similarity). {ECO:0000250}. ENOG411DWHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dehydratase shikimate dehydrogenase NA NA NA NA NA NA NA ENOG411DWHE LPPepsilon2 A0A1P8BFD6,A0A1P8BFE5 A0A1P8BFD6_ARATH,A0A1P8BFE5_ARATH Phosphatidic acid phosphatase (PAP2) family protein 33399,27147 Phosphatidic acid phosphatase (PAP2) family protein integral component of membrane [GO:0016021] PAP2 superfamily NA NA NA NA NA NA NA ENOG411DWHD MHK P43294,A0A1P8B7U3,A0A1P8B7T8,A0A1P8B7T9,B3H7B5,F4JS69,F4JS72 MHK_ARATH,A0A1P8B7U3_ARATH,A0A1P8B7T8_ARATH,A0A1P8B7T9_ARATH,B3H7B5_ARATH,F4JS69_ARATH,F4JS72_ARATH Serine/threonine-protein kinase MHK (EC 2.7.11.22),Protein kinase superfamily protein FUNCTION: May play a role in the regulation of plant growth and development. 2.7.11.22; 2.7.11.22 50896,44081,43085,45220,46602,50965,50983 Serine/threonine-protein kinase MHK (EC 2.7.11.22),Protein kinase superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; regulation of gene expression [GO:0010468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Roots, leaves and stems. locus:2123221; AT4G13020 serine threonine-protein kinase Cyclin-dependent kinase F-3 (CDKF;3) (EC 2.7.11.22) (EC 2.7.11.23) (Serine/threonine-protein kinase MHK-like protein 1) Q84SN3 CDKF3_ORYSJ CDKF-3 Os03g0847600 LOC_Os03g63020 OSJNBb0043P23.8 ENOG411DWHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411DWHB CHX15 Q9SIT5 CHX15_ARATH Cation/H(+) antiporter 15 (Protein CATION/H+ EXCHANGER 15) (AtCHX15) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 89860 Cation/H(+) antiporter 15 (Protein CATION/H+ EXCHANGER 15) (AtCHX15) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:2054152; AT2G13620 Cation H( ) antiporter Os05g0485000 protein (Putative cation/hydrogen exchanger (CHX6a)),Os01g0969400 protein,Os01g0817400 protein Q75J76,A0A0P0VDN7,A0A0P0V9Q3 Q75J76_ORYSJ,A0A0P0VDN7_ORYSJ,A0A0P0V9Q3_ORYSJ Os05g0485000 OsJ_18983 OSJNBb0099O15.10 OSNPB_050485000,Os01g0969400 OSNPB_010969400,Os01g0817400 OSNPB_010817400 ENOG411DWHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calmodulin binding protein-like Calmodulin-binding protein, putative, expressed (Os12g0556300 protein),Os11g0668600 protein (Os11g0668650 protein),Expressed protein (Os11g0669100 protein),Os11g0668300 protein,Os11g0668600 protein,Os04g0122300 protein Q2QNS2,Q0IR76,Q2QZV8,A0A0P0Y591,A0A0P0Y5G3,A0A0P0W674 Q2QNS2_ORYSJ,Q0IR76_ORYSJ,Q2QZV8_ORYSJ,A0A0P0Y591_ORYSJ,A0A0P0Y5G3_ORYSJ,A0A0P0W674_ORYSJ LOC_Os12g36920 Os12g0556300 OSNPB_120556300,Os11g0668600 Os11g0668650 OSNPB_110668650,Os11g0669100 LOC_Os11g44680 Os11g0669100 OSNPB_110669100,Os11g0668300 OSNPB_110668300,Os11g0668600 OSNPB_110668600,Os04g0122300 OSNPB_040122300 ENOG411E359 Q9LJX6 Q9LJX6_ARATH AT3G20230 protein (Ribosomal L18p/L5e family protein) (Uncharacterized protein At3g20230) 21122 AT3G20230 protein (Ribosomal L18p/L5e family protein) (Uncharacterized protein At3g20230) ribosome [GO:0005840]; 5S rRNA binding [GO:0008097]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2087535; AT3G20230 50S ribosomal protein Os02g0689700 protein (cDNA clone:J023132I06, full insert sequence),Os02g0689700 protein (Fragment) Q6ZGY5,Q0DYI9 Q6ZGY5_ORYSJ,Q0DYI9_ORYSJ Os02g0689700 OJ1743_B12.26 OsJ_07988 OSNPB_020689700,Os02g0689700 Os02g0689700 OSNPB_020689700 ENOG411E358 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RuBisCO catalyzes two reactions the carboxylation of D- ribulose 15-bisphosphate the primary event in carbon dioxide fixation as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity) Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) Q67IU5 Q67IU5_ORYSJ Os02g0152400 OsJ_05407 OSJNBa0050G13.33 OSNPB_020152400 P0463E12.1 FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. {ECO:0000256|RuleBase:RU003627}. ENOG411EA2V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EA2Q Q9FJL1 Q9FJL1_ARATH Gb|AAF02142.1 (Phosphoserine aminotransferase, putative (DUF760)) (Uncharacterized protein At5g48590) 38959 Gb|AAF02142.1 (Phosphoserine aminotransferase, putative (DUF760)) (Uncharacterized protein At5g48590) transaminase activity [GO:0008483] locus:2152516; AT5G48590 Protein of unknown function (DUF760) NA NA NA NA NA NA NA ENOG411DR3M F4JHZ4 F4JHZ4_ARATH Glycosyl transferase family 1 protein (Glycosyltransferase) 119399 Glycosyl transferase family 1 protein (Glycosyltransferase) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2124953; AT4G01210 glycosyltransferase family protein 1 Os01g0622000 protein (Fragment),Os01g0622066 protein A0A0P0V5D1,A0A0P0V5E8 A0A0P0V5D1_ORYSJ,A0A0P0V5E8_ORYSJ Os01g0622000 OSNPB_010622000,Os01g0622066 OSNPB_010622066 ENOG411DR3J SKIP11 Q9CA63,Q8L736,Q9M9S9 FBK29_ARATH,SKI11_ARATH,Q9M9S9_ARATH F-box/kelch-repeat protein At1g74510,F-box/kelch-repeat protein SKIP11 (SKP1-interacting partner 11),At1g14330/F14L17_7 (F14L17.10 protein) (Galactose oxidase/kelch repeat superfamily protein) (Uncharacterized protein At1g14330) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 49648,51698,49519 F-box/kelch-repeat protein At1g74510,F-box/kelch-repeat protein SKIP11 (SKP1-interacting partner 11),At1g14330/F14L17_7 (F14L17.10 protein) (Galactose oxidase/kelch repeat superfamily protein) (Uncharacterized protein At1g14330) cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:2019215;,locus:2056705;,locus:2012547; AT1G74510,AT2G02870,AT1G14330 F-box kelch-repeat protein Kelch repeat-containing F-box-like (Os02g0748300 protein),Os02g0748300 protein (Fragment) Q6YUW3,A0A0P0VPG1 Q6YUW3_ORYSJ,A0A0P0VPG1_ORYSJ OSJNBa0078N11.31 Os02g0748300 OSNPB_020748300,Os02g0748300 OSNPB_020748300 ENOG411DR3S MFDR Q8W3L1,A0A1P8B7D7,A0A1P8B7D0,A0A1P8B7D9,A0A1P8B7D4,A0A1P8B7E6,A0A1P8B7D1,A0A1P8B7G1 MFDR_ARATH,A0A1P8B7D7_ARATH,A0A1P8B7D0_ARATH,A0A1P8B7D9_ARATH,A0A1P8B7D4_ARATH,A0A1P8B7E6_ARATH,A0A1P8B7D1_ARATH,A0A1P8B7G1_ARATH NADPH:adrenodoxin oxidoreductase, mitochondrial (Adrenodoxin reductase) (EC 1.18.1.6) (Mitochondrial ferredoxin reductase) (AtMFDR),Pyridine nucleotide-disulfide oxidoreductase family protein,NADPH:adrenodoxin oxidoreductase, mitochondrial (EC 1.18.1.6) FUNCTION: Associates in vitro with the adrenodoxin-like protein MFDX1 to form an efficient low potential electron transfer chain that is able to reduce cytochrome C (PubMed:12714594, PubMed:13677469). Functions as accessory mitochondrial protein involved with BIO2 in the plant biotin synthase reaction (PubMed:12714594). {ECO:0000269|PubMed:12714594, ECO:0000269|PubMed:13677469}. ARA:AT4G32360-MONOMER; R-ATH-2395516; 2.8.1.6; 1.18.1.6 53070,28015,34511,40258,46538,41042,41162,40043 NADPH:adrenodoxin oxidoreductase, mitochondrial (Adrenodoxin reductase) (EC 1.18.1.6) (Mitochondrial ferredoxin reductase) (AtMFDR),Pyridine nucleotide-disulfide oxidoreductase family protein,NADPH:adrenodoxin oxidoreductase, mitochondrial (EC 1.18.1.6) cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; flavin adenine dinucleotide binding [GO:0050660]; NADPH-adrenodoxin reductase activity [GO:0015039]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor [GO:0016731]; biotin biosynthetic process [GO:0009102]; electron transport chain [GO:0022900],oxidoreductase activity [GO:0016491],mitochondrial matrix [GO:0005759]; NADPH-adrenodoxin reductase activity [GO:0015039] locus:2127811; AT4G32360 NADPH adrenodoxin oxidoreductase mitochondrial NADPH:adrenodoxin oxidoreductase, mitochondrial (EC 1.18.1.6) Q6ERP0 Q6ERP0_ORYSJ Os02g0277600 Os02g0277600 OsJ_06239 OSJNBa0055M07.15 OSNPB_020277600 ENOG411DR36 EXO84A,EXO84B F4I4B6,Q9LTB0,F4K7F4,F4K7F5 EX84A_ARATH,EX84B_ARATH,F4K7F4_ARATH,F4K7F5_ARATH Exocyst complex component EXO84A (AtExo80a),Exocyst complex component EXO84B (AtExo80b),Exocyst complex component 84B DISRUPTION PHENOTYPE: Sterile plants with extreme dwarf phenotype and cytokinetic defects, and accumulation of vesicles in leaf epidermal cells. {ECO:0000269|PubMed:20870962}. Dwarf; Abnormal leaf morphology; Sterile; Abnormal trichomes and epidermal cell morphology-V. Zarsky-2010 FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall (By similarity). {ECO:0000250}.,FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. Probable component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole. Regulates autophagosome formation and autophagy-related Golgi-independent import into the vacuole. {ECO:0000269|PubMed:20870962, ECO:0000269|PubMed:23944713}. 83401,82748,86322,89760 Exocyst complex component EXO84A (AtExo80a),Exocyst complex component EXO84B (AtExo80b),Exocyst complex component 84B exocyst [GO:0000145]; exocyst assembly [GO:0001927]; exocyst localization [GO:0051601],cell wall [GO:0005618]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular region [GO:0005576]; perinuclear region of cytoplasm [GO:0048471]; phragmoplast [GO:0009524]; exocyst assembly [GO:0001927]; exocyst localization [GO:0051601],exocyst [GO:0000145]; exocytosis [GO:0006887],cytosol [GO:0005829]; exocyst [GO:0000145]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; acceptance of pollen [GO:0060321]; exocytosis [GO:0006887] locus:505006115;,locus:2155441; AT1G10385,AT5G49830 Vps51/Vps67 Os07g0200000 protein,Expressed protein (Expressed protein (With alternative splicing)) (Os03g0804400 protein) (cDNA clone:J013146K15, full insert sequence),Os03g0804400 protein,Os07g0200000 protein (Fragment) Q6Z371,Q75HJ8,A0A0P0W5D1,A0A0P0X3G3 Q6Z371_ORYSJ,Q75HJ8_ORYSJ,A0A0P0W5D1_ORYSJ,A0A0P0X3G3_ORYSJ Os07g0200000 Os07g0200000 OsJ_23466 OSNPB_070200000 P0519E02.19,LOC_Os03g58970 Os03g0804400 OSJNBb0015I02.6 OSNPB_030804400,Os03g0804400 OSNPB_030804400,Os07g0200000 OSNPB_070200000 ENOG411EJS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJS6 RPL2 P93311,F4IMC7 RM02_ARATH,F4IMC7_ARATH 60S ribosomal protein L2, mitochondrial,Nucleic acid-binding, OB-fold-like protein MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07715) is not demonstrated. 37913,42486 60S ribosomal protein L2, mitochondrial,Nucleic acid-binding, OB-fold-like protein mitochondrial large ribosomal subunit [GO:0005762]; mitochondrion [GO:0005739]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543],mitochondrial large ribosomal subunit [GO:0005762]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; mitochondrial translation [GO:0032543] locus:504954539;,locus:2828126; ATMG00560,AT2G07715 60S ribosomal protein L2 NA NA NA NA NA NA NA ENOG411EJS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: cell division cycle NA NA NA NA NA NA NA ENOG411EJSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Meiosis-specific protein PAIR3 (Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3) B9G5N1 PAIR3_ORYSJ PAIR3 Os10g0405500 LOC_Os10g26560 OsJ_31462 OSJNBa0060A14.5 DISRUPTION PHENOTYPE: Sterility in both male and female gametes. {ECO:0000269|PubMed:19392701}. FUNCTION: Plays a crucial role in homologous chromosome pairing and synapsis in meiosis. Does not seem required for cytokinesis (PubMed:19392701). Is essential for meiotic bouquet formation, homologous chromosome pairing and normal recombination, and synaptonemal complex (SC) assembly. Required for the proper association of PAIR2 with chromosomes (PubMed:21119003). {ECO:0000269|PubMed:19392701, ECO:0000269|PubMed:21119003}. ENOG411EJSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: saccharopine dehydrogenase NA NA NA NA NA NA NA ENOG411EJSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: auxiliary factor Os02g0557500 protein (Fragment) A0A0P0VKC1 A0A0P0VKC1_ORYSJ Os02g0557500 OSNPB_020557500 ENOG411EJSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prefoldin subunit NA NA NA NA NA NA NA ENOG411EJSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Urb2/Npa2 family NA NA NA NA NA NA NA ENOG411EJSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription- and export-related complex subunit NA NA NA NA NA NA NA ENOG411EJSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EC8R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411E59S F27H5_60 O80517,Q9LY37 BCB2_ARATH,Q9LY37_ARATH Uclacyanin-2 (Blue copper-binding protein II) (BCB II) (Phytocyanin 2) (Uclacyanin-II),Cupredoxin superfamily protein (Stellacyanin (Uclacyanin 3)-like protein) FUNCTION: Probably acts as an electron carrier involved in oxygen activation and/or lignin formation. 20354,19383 Uclacyanin-2 (Blue copper-binding protein II) (BCB II) (Phytocyanin 2) (Uclacyanin-II),Cupredoxin superfamily protein (Stellacyanin (Uclacyanin 3)-like protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasmodesma [GO:0009506]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2042426;,locus:2081952; AT2G44790,AT3G60270 Plastocyanin-like domain Os02g0653200 protein (Fragment) A0A0N7KFT0 A0A0N7KFT0_ORYSJ Os02g0653200 OSNPB_020653200 ENOG411E59R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Heavy metal-associated domain containing protein, expressed (Os03g0388100 protein) (Putative ATPase) (cDNA clone:001-031-H07, full insert sequence) (cDNA clone:J023049J05, full insert sequence) Q6AVE8 Q6AVE8_ORYSJ Os03g0388100 LOC_Os03g27040 Os03g0388100 OSJNBb0058G04.4 OSNPB_030388100 ENOG411E59Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os11g0442900 protein (Zinc finger, C2H2 type family protein, expressed) (Zinc finger, C2H2 type, putative) (cDNA clone:002-173-C05, full insert sequence) Q53KY2 Q53KY2_ORYSJ LOC_Os11g25610 Os11g0442900 OsJ_32680 OSNPB_110442900 ENOG411E59Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os03g0236300 protein A0A0P0VV85 A0A0P0VV85_ORYSJ Os03g0236300 OSNPB_030236300 ENOG411EDR6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF760) NA NA NA NA NA NA NA ENOG411E59D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA jasmonate-induced protein OSJNBa0024J22.15 protein (OSJNBa0033H08.12 protein) (Os04g0308500 protein) (Os04g0310100 protein) Q7XXL5 Q7XXL5_ORYSJ Os04g0310100 Os04g0308500 OsJ_14227 OSJNBa0024J22.15 OSJNBa0033H08.12 OSNPB_040308500 OSNPB_040310100 ENOG411E59J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:3_5_exonuc Os01g0660500 protein,Os11g0222440 protein,Os11g0222320 protein (Fragment) A0A0P0V657,A0A0P0Y0D3,A0A0P0Y042 A0A0P0V657_ORYSJ,A0A0P0Y0D3_ORYSJ,A0A0P0Y042_ORYSJ Os01g0660500 OSNPB_010660500,Os11g0222440 OSNPB_110222440,Os11g0222320 OSNPB_110222320 ENOG411E59M F24G24.100 Q9SV91 Q9SV91_ARATH At4g10300 (RmlC-like cupins superfamily protein) (Uncharacterized protein AT4g10300) (Uncharacterized protein F24G24.100) 14937 At4g10300 (RmlC-like cupins superfamily protein) (Uncharacterized protein AT4g10300) (Uncharacterized protein F24G24.100) chloroplast [GO:0009507] locus:2122734; AT4G10300 Enzyme of the cupin superfamily Os04g0445200 protein (cDNA clone:001-102-H05, full insert sequence) (cDNA clone:002-157-G07, full insert sequence) Q0JCX3 Q0JCX3_ORYSJ Os04g0445200 Os04g0445200 OsJ_14940 OSNPB_040445200 ENOG411E582 SGR9 Q8GXF8 SHGR9_ARATH E3 ubiquitin-protein ligase SGR9, amyloplastic (EC 2.3.2.27) (Protein SHOOT GRAVITROPISM 9) (RING-type E3 ubiquitin transferase SGR9) DISRUPTION PHENOTYPE: Reduced gravitropism, altered amyloplasts sedimentation but increased amyloplasts saltatory movement. Abnormal interactions between amyloplasts and actin filaments (AFs) in endodermal cells. {ECO:0000269|PubMed:21602290}. FUNCTION: E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Modulates amyloplast dynamics and sedimentation in statocytes during inflorescence, hypocotyl and root gravitropism, probably by regulating amyloplast interaction with actin filaments (AFs) in endodermal cells. {ECO:0000269|PubMed:21602290}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 32149 E3 ubiquitin-protein ligase SGR9, amyloplastic (EC 2.3.2.27) (Protein SHOOT GRAVITROPISM 9) (RING-type E3 ubiquitin transferase SGR9) amyloplast [GO:0009501]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; gravitropism [GO:0009630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] TISSUE SPECIFICITY: Expressed in seedlings, hypocotyls, roots and stems. Present especially in hypocotyl and inflorescence endodermis, as well as in root cap columella, tissues that act as statocytes. {ECO:0000269|PubMed:21602290}. locus:2151241; AT5G02750 zinc finger Os05g0408800 protein A0A0P0WMA4 A0A0P0WMA4_ORYSJ Os05g0408800 OSNPB_050408800 ENOG411E583 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0681850 protein A0A0P0WGG8 A0A0P0WGG8_ORYSJ Os04g0681850 OSNPB_040681850 ENOG411E580 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription DNA-dependent B3 domain-containing protein Os08g0324300,Putative B3 domain-containing protein Os08g0325100 Q6Z0D9,Q6Z0D2 Y8347_ORYSJ,Y8251_ORYSJ Os08g0324300 LOC_Os08g23470 OSJNBa0078D03.26 P0703C03.6,Os08g0325134 LOC_Os08g23570 OsJ_26886 OSJNBa0078D03.39 P0703C03.19 ENOG411E581 Q9LSM3 Q9LSM3_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At5g65520) (Uncharacterized protein At5g65520/K21L13_2) 22802 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At5g65520) (Uncharacterized protein At5g65520/K21L13_2) integral component of membrane [GO:0016021] locus:2155690; AT5G65520 Inherit from euNOG: Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411E586 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger NA NA NA NA NA NA NA ENOG411E587 VHA-G2,VHA-G1 O82629,O82628 VATG2_ARATH,VATG1_ARATH V-type proton ATPase subunit G2 (V-ATPase subunit G2) (Vacuolar H(+)-ATPase subunit G isoform 2) (Vacuolar proton pump subunit G2),V-type proton ATPase subunit G1 (V-ATPase subunit G1) (Vacuolar H(+)-ATPase subunit G isoform 1) (Vacuolar proton pump subunit G1) FUNCTION: Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. 11742,12397 V-type proton ATPase subunit G2 (V-ATPase subunit G2) (Vacuolar H(+)-ATPase subunit G isoform 2) (Vacuolar proton pump subunit G2),V-type proton ATPase subunit G1 (V-ATPase subunit G1) (Vacuolar H(+)-ATPase subunit G isoform 1) (Vacuolar proton pump subunit G1) Golgi apparatus [GO:0005794]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuole [GO:0005773]; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO:0016820]; proton transport [GO:0015992],cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; proton-transporting two-sector ATPase complex [GO:0016469]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuole [GO:0005773]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP hydrolysis coupled proton transport [GO:0015991] locus:2128499;,locus:2096682; AT4G23710,AT3G01390 V-type proton ATPase subunit V-type proton ATPase subunit G Q7FAM9 Q7FAM9_ORYSJ Os04g0601700 OsJ_16040 OSJNBa0041A02.7 OSJNBa0083N12.23 OSNPB_040601700 FUNCTION: Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. {ECO:0000256|RuleBase:RU364019}. ENOG411E584 AtXYP8 Q9LJ86 Q9LJ86_ARATH AT3g22600/F16J14_17 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Xylogen like protein 8) 17306 AT3g22600/F16J14_17 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Xylogen like protein 8) anchored component of membrane [GO:0031225]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2077001; AT3G22600 Non-specific lipid-transfer protein-like protein NA NA NA NA NA NA NA ENOG411E585 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E588 F4IHX8 F4IHX8_ARATH Cytomegalovirus UL139 protein 19509 Cytomegalovirus UL139 protein locus:2062356; AT2G34580 Human Cytomegalovirus UL139 protein Os02g0244000 protein A0A0P0VGX9 A0A0P0VGX9_ORYSJ Os02g0244000 OSNPB_020244000 ENOG411E589 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3615) Os06g0136100 protein (cDNA clone:J033000O24, full insert sequence),Os06g0134500 protein (cDNA clone:001-115-E11, full insert sequence),Os06g0134300 protein,Os06g0134400 protein,Os06g0133700 protein,Os06g0134466 protein (Fragment),Os06g0136100 protein (Fragment) Q5VNU1,Q5VNV3,Q5VNV6,Q5VNV5,A0A0P0WSL3,A0A0P0WS06,A0A0P0WSS3 Q5VNU1_ORYSJ,Q5VNV3_ORYSJ,Q5VNV6_ORYSJ,Q5VNV5_ORYSJ,A0A0P0WSL3_ORYSJ,A0A0P0WS06_ORYSJ,A0A0P0WSS3_ORYSJ Os06g0136100 OsJ_20039 OSNPB_060136100 P0001H02.29 P0548D03.14,Os06g0134500 Os06g0134500 OsJ_20029 OSNPB_060134500 P0001H02.13,Os06g0134300 OsJ_20026 OSNPB_060134300 P0001H02.9,Os06g0134400 OSNPB_060134400 P0001H02.10,Os06g0133700 OSNPB_060133700,Os06g0134466 OSNPB_060134466,Os06g0136100 OSNPB_060136100 ENOG411E58W MGD8.14,EMB2786 Q93XW8,A8MSC1 Q93XW8_ARATH,A8MSC1_ARATH COMPLEX 1 LYR-like protein (Uncharacterized protein At3g17330) (Uncharacterized protein At3g17330; MGD8.14),COMPLEX 1 LYR-like protein Embryo defective; Preglobular-D. Meinke-2008 10431,8483 COMPLEX 1 LYR-like protein (Uncharacterized protein At3g17330) (Uncharacterized protein At3g17330; MGD8.14),COMPLEX 1 LYR-like protein locus:2089060; AT3G17300 NA Os12g0566100 protein (Fragment) A0A0P0YBF2 A0A0P0YBF2_ORYSJ Os12g0566100 OSNPB_120566100 ENOG411E58Z DGAT3 Q9C5W0 DGAT3_ARATH Diacylglycerol O-acyltransferase 3, cytosolic (AtDGAT3) (EC 2.3.1.20) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:22760209}. FUNCTION: Involved in triacylglycerol (TAG) biosynthesis in cytosol. Catalyzes the acylation of the sn-3 hydroxy group of sn-1,2-diacylglycerol using acyl-CoA. Preferentially uses linolenoyl-CoA as substrate and to a lesser extent linoleoyl-CoA. May contribute to the active recycling of linoleate and linolenate into TAG when seed oil breakdown is blocked. {ECO:0000269|PubMed:22760209}. PATHWAY: Glycerolipid metabolism; triacylglycerol biosynthesis. {ECO:0000305}. 2.3.1.20 30799 Diacylglycerol O-acyltransferase 3, cytosolic (AtDGAT3) (EC 2.3.1.20) cytosol [GO:0005829]; diacylglycerol O-acyltransferase activity [GO:0004144]; glycerol metabolic process [GO:0006071]; triglyceride biosynthetic process [GO:0019432] locus:2007750; AT1G48300 NA Os05g0137300 protein (cDNA clone:J013114P12, full insert sequence) Q75L36 Q75L36_ORYSJ Os05g0137300 Os05g0137300 OJ1127_B08.12 OsJ_17038 OSNPB_050137300 ENOG411E58X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA allergen and extensin family protein Os01g0164025 protein,Os01g0164200 protein,Os01g0164000 protein,Os01g0163600 protein,Os01g0164075 protein,Os01g0163300 protein,Os01g0164100 protein,Os01g0163812 protein,Os01g0163100 protein Q8LJM9,Q8LJM5,Q8LJM8,Q8LJN2,A2ZPL3,Q5VR30,Q8LJM6,A0A0P0UYM0,A0A0P0UYX7 Q8LJM9_ORYSJ,Q8LJM5_ORYSJ,Q8LJM8_ORYSJ,Q8LJN2_ORYSJ,A2ZPL3_ORYSJ,Q5VR30_ORYSJ,Q8LJM6_ORYSJ,A0A0P0UYM0_ORYSJ,A0A0P0UYX7_ORYSJ Os01g0164025 B1189A09.39 OsJ_06139 OSNPB_010164025,Os01g0164200 B1189A09.44 OsJ_00492 OSNPB_010164200,Os01g0164000 B1189A09.40 OsJ_06138 OSNPB_010164000,Os01g0163600 B1189A09.37 OsJ_00488 OSNPB_010163600,Os01g0164075 OsJ_00490 OSNPB_010164075,B1189A09.34 Os01g0163300 OSNPB_010163300,Os01g0164100 B1189A09.43 OsJ_00491 OSNPB_010164100,Os01g0163812 OSNPB_010163812,Os01g0163100 OSNPB_010163100 ENOG411E58B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os03g0372900 protein) (cDNA clone:J023087N09, full insert sequence),Expressed protein (Os03g0380200 protein),Os03g0373066 protein,Os03g0374050 protein Q10KR9,Q10KK9,A0A0P0VXX5,A0A0P0VYQ0 Q10KR9_ORYSJ,Q10KK9_ORYSJ,A0A0P0VXX5_ORYSJ,A0A0P0VYQ0_ORYSJ LOC_Os03g25640 Os03g0372900 OSNPB_030372900,Os03g0380200 LOC_Os03g26310 OsJ_11059 OSJNBa0013O08.14 OSNPB_030380200,Os03g0373066 OSNPB_030373066,Os03g0374050 OSNPB_030374050 ENOG411E58D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E58E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os01g0745000 protein,Os01g0744700 protein (Fragment),Os05g0520500 protein A0A0P0V847,A0A0P0V832,A0A0P0WPW4 A0A0P0V847_ORYSJ,A0A0P0V832_ORYSJ,A0A0P0WPW4_ORYSJ Os01g0745000 OSNPB_010745000,Os01g0744700 OSNPB_010744700,Os05g0520500 OSNPB_050520500 ENOG411E58J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EF hand family protein Os01g0783700 protein (Putative EF-hand Ca2+-binding protein CCD1) (cDNA clone:002-188-B02, full insert sequence) Q8LQQ2 Q8LQQ2_ORYSJ Os01g0783700 Os01g0783700 B1100D10.42 OsJ_03698 OSNPB_010783700 ENOG411E58K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0253500 protein (cDNA, clone: J100088F12, full insert sequence) Q9S782 Q9S782_ORYSJ Os01g0253500 OSNPB_010253500 P0503G09.16 P0705D01.3 ENOG411E58H Q6ID87 Q6ID87_ARATH At1g01310 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) 27396 At1g01310 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein) extracellular region [GO:0005576] locus:2035317; AT1G01310 Allergen V5 Tpx-1-related family protein NA NA NA NA NA NA NA ENOG411DRTV SIR Q9LZ66 SIR_ARATH Assimilatory sulfite reductase (ferredoxin), chloroplastic (AtSiR) (EC 1.8.7.1) (Sulfite reductase (ferredoxin)) FUNCTION: Essential protein with sulfite reductase activity required in assimilatory sulfate reduction pathway during both primary and secondary metabolism and thus involved in development and growth. {ECO:0000269|PubMed:20424176}.; FUNCTION: DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication. {ECO:0000250|UniProtKB:Q75NZ0}. MetaCyc:AT5G04590-MONOMER; 1.8.7.1 71950 Assimilatory sulfite reductase (ferredoxin), chloroplastic (AtSiR) (EC 1.8.7.1) (Sulfite reductase (ferredoxin)) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast nucleoid [GO:0042644]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; plastid [GO:0009536]; stromule [GO:0010319]; 4 iron, 4 sulfur cluster binding [GO:0051539]; copper ion binding [GO:0005507]; DNA binding [GO:0003677]; heme binding [GO:0020037]; sulfite reductase (ferredoxin) activity [GO:0050311]; sulfite reductase activity [GO:0016002]; DNA packaging [GO:0006323]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of DNA replication [GO:0006275]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; sulfide oxidation, using siroheme sulfite reductase [GO:0019424]; sulfur compound metabolic process [GO:0006790] TISSUE SPECIFICITY: Present in leaves and roots. {ECO:0000269|PubMed:9661674}. locus:2184457; AT5G04590 Sulfite reductase Os05g0503300 protein (Putative ferredoxin-sulfite reductase),Os05g0503300 protein Q60EA3,A0A0P0WP74 Q60EA3_ORYSJ,A0A0P0WP74_ORYSJ Os05g0503300 Os05g0503300 OsJ_19113 OSJNBa0017K09.18 OSJNBb0048K05.3 OSNPB_050503300,Os05g0503300 OSNPB_050503300 ENOG411DRTW NUP155 F4HXV6 NU155_ARATH Nuclear pore complex protein NUP155 (Nucleoporin 155) FUNCTION: Major component of the nuclear pore complex (NPC). {ECO:0000305|PubMed:12034489}. 160014 Nuclear pore complex protein NUP155 (Nucleoporin 155) chloroplast [GO:0009507]; nuclear pore [GO:0005643]; nuclear pore inner ring [GO:0044611]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; nucleocytoplasmic transporter activity [GO:0005487]; structural constituent of nuclear pore [GO:0017056]; mRNA transport [GO:0051028]; nucleocytoplasmic transport [GO:0006913]; protein import into nucleus [GO:0006606]; protein localization to nuclear inner membrane [GO:0036228]; RNA export from nucleus [GO:0006405]; transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000972] locus:2006802; AT1G14850 Nuclear pore complex protein Os06g0305200 protein (Putative Nuclear pore complex protein Nup155),Os06g0305200 protein (Fragment),Os03g0223800 protein Q5Z4E0,A0A0P0WVN3,A0A0P0VUU9 Q5Z4E0_ORYSJ,A0A0P0WVN3_ORYSJ,A0A0P0VUU9_ORYSJ Os06g0305200 Os06g0305200 B1386G10.12 OSNPB_060305200,Os06g0305200 OSNPB_060305200,Os03g0223800 OSNPB_030223800 ENOG411DRTT MYC6.16 Q9FN55 Q9FN55_ARATH At5g41460 (Glycosyltransferase) (Transferring glycosyl group transferase (DUF604)) 60011 At5g41460 (Glycosyltransferase) (Transferring glycosyl group transferase (DUF604)) integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:2177896; AT5G41460 Protein of unknown function DUF604 NA NA NA NA NA NA NA ENOG411DRTU FTB,ERA1 Q38920,A0A1P8BE65 FNTB_ARATH,A0A1P8BE65_ARATH Protein farnesyltransferase subunit beta (FTase-beta) (EC 2.5.1.58) (CAAX farnesyltransferase subunit beta) (Enhanced response to abscisic acid 1) (Ras proteins prenyltransferase subunit beta),Prenyltransferase family protein DISRUPTION PHENOTYPE: Plants show an increase in floral organ number, particularly in the sepals and petals, correlating with an increase in the width of young floral meristems. {ECO:0000269|PubMed:10840062}. Decreased germination efficiency under normal postimbibition conditions. Dormancy is alleviated by a 4-day chilling period. The efficiency of germination increases with the length of time the seeds are chilled.,Enlarged meristems extra floral organsretarded growth and reduced stature Abnormal stomatal regulation in response to ABA-P. McCourt-1996 FUNCTION: Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X (CaaX). The beta subunit is responsible for peptide-binding. {ECO:0000269|PubMed:20565889}. ARA:AT5G40280-MONOMER;MetaCyc:AT5G40280-MONOMER; 2.5.1.58 54216,58072 Protein farnesyltransferase subunit beta (FTase-beta) (EC 2.5.1.58) (CAAX farnesyltransferase subunit beta) (Enhanced response to abscisic acid 1) (Ras proteins prenyltransferase subunit beta),Prenyltransferase family protein protein farnesyltransferase complex [GO:0005965]; farnesyltranstransferase activity [GO:0004311]; protein farnesyltransferase activity [GO:0004660]; zinc ion binding [GO:0008270]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein farnesylation [GO:0018343]; protein prenylation [GO:0018342]; regulation of cell proliferation [GO:0042127]; regulation of meristem structural organization [GO:0009934]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414],protein farnesyltransferase complex [GO:0005965]; transferase activity [GO:0016740]; protein farnesylation [GO:0018343]; regulation of cell proliferation [GO:0042127] locus:2173802; AT5G40280 protein farnesyltransferase subunit Os01g0737800 protein (cDNA clone:J033029E14, full insert sequence),Os01g0737800 protein Q0JJI1,A0A0P0V7Y0 Q0JJI1_ORYSJ,A0A0P0V7Y0_ORYSJ Os01g0737800 Os01g0737800 OSNPB_010737800,Os01g0737800 OSNPB_010737800 ENOG411DRTR Q8VYA4,F4JRN8 Q8VYA4_ARATH,F4JRN8_ARATH At4g18810 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein At4g18810; F28A21.220),NAD(P)-binding Rossmann-fold superfamily protein 65468,69138 At4g18810 (NAD(P)-binding Rossmann-fold superfamily protein) (Uncharacterized protein At4g18810; F28A21.220),NAD(P)-binding Rossmann-fold superfamily protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; vacuole [GO:0005773] locus:2124107; AT4G18810 Complex I intermediate-associated protein 30 (CIA30) Os02g0234500 protein (Putative UOS1) (cDNA clone:J013128H21, full insert sequence),Os02g0234500 protein (Fragment) Q6EUK5,A0A0P0VGU2,A0A0N7KEZ7 Q6EUK5_ORYSJ,A0A0P0VGU2_ORYSJ,A0A0N7KEZ7_ORYSJ Os02g0234500 Os02g0234500 OJ1145_E05.7-1 OsJ_06005 OSNPB_020234500,Os02g0234500 OSNPB_020234500 ENOG411DRTS SQD2 Q8S4F6,A0A1P8BCW3 SQD2_ARATH,A0A1P8BCW3_ARATH Sulfoquinovosyl transferase SQD2 (EC 2.4.1.-) (Protein SULFOQUINOVOSYLDIACYLGLYCEROL 2) (Sulfolipid synthase SQD2) (UDP-sulfoquinovose: diacylglycerol alpha-sulfoquinovosyltransferase SQD2),Sulfoquinovosyldiacylglycerol 2 DISRUPTION PHENOTYPE: Lack of sulfolipid leading to reduced growth under phosphate-limited growth conditions. {ECO:0000269|PubMed:11960029}. Sensitive to limited phosphate; Low sulfolipid levels-C. Benning-2002 FUNCTION: Catalyzes the transfer of the sulfoquinovose moiety from UDP-sulfoquinovose to diacylglycerol during sulfolipid biosynthesis. Sulfolipid contributes to maintaining a negatively charged lipid-water interface, a requirement for proper function of photosynthetic membranes. Sulfolipid may also function as a substitute of anionic phospholipids under phosphate-limited growth conditions. {ECO:0000269|PubMed:11960029}. PATHWAY: Glycolipid biosynthesis. {ECO:0000269|PubMed:11960029}. MetaCyc:MONOMER-1202; 2.4.1.- 56630,47525 Sulfoquinovosyl transferase SQD2 (EC 2.4.1.-) (Protein SULFOQUINOVOSYLDIACYLGLYCEROL 2) (Sulfolipid synthase SQD2) (UDP-sulfoquinovose: diacylglycerol alpha-sulfoquinovosyltransferase SQD2),Sulfoquinovosyldiacylglycerol 2 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; UDP-glycosyltransferase activity [GO:0008194]; cellular response to phosphate starvation [GO:0016036]; glycolipid biosynthetic process [GO:0009247]; sulfolipid biosynthetic process [GO:0046506] locus:2150059; AT5G01220 GDP-mannose-dependent alpha-mannosyltransferase-like Os07g0100300 protein (Putative sulfolipid synthase) (cDNA clone:J013048L15, full insert sequence),Os07g0100300 protein,Os07g0100300 protein (Fragment) Q69LA5,A0A0P0X1D7,A0A0P0X1G8 Q69LA5_ORYSJ,A0A0P0X1D7_ORYSJ,A0A0P0X1G8_ORYSJ B1026C12.5-1 Os07g0100300 OSJNOa219C16.4-1 OSNPB_070100300,Os07g0100300 OSNPB_070100300 ENOG411DRTP psbB P56777 PSBB_ARATH Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) FUNCTION: One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. {ECO:0000255|HAMAP-Rule:MF_01495}. MetaCyc:ATCG00680-MONOMER; 56037 Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; photosynthetic electron transport in photosystem II [GO:0009772]; photosystem II assembly [GO:0010207]; protein-chromophore linkage [GO:0018298] locus:504954691; ATCG00680 One of the components of the core antenna complex of photosystem II. It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of photosystem II (By similarity) Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) P0C364 PSBB_ORYSJ psbB LOC_Osp1g00600 Nip090 FUNCTION: One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. {ECO:0000255|HAMAP-Rule:MF_01495}. ENOG411DRTQ LOX2 P38418,A0A1I9LPH1 LOX2_ARATH,A0A1I9LPH1_ARATH Lipoxygenase 2, chloroplastic (AtLOX2) (EC 1.13.11.12),Lipoxygenase (EC 1.13.11.-) Low levels of bound cyclopentenone jasmonates-E. Farmer-2009 FUNCTION: 13S-lipoxygenase that can use linolenic acid as substrates. Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Required for the wound-induced synthesis of jasmonic acid (JA) in leaves. {ECO:0000269|PubMed:18949503, ECO:0000269|PubMed:7567995}.,FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. {ECO:0000256|RuleBase:RU003975}. PATHWAY: Lipid metabolism; oxylipin biosynthesis. {ECO:0000255|PROSITE-ProRule:PRU00726}.,PATHWAY: Lipid metabolism; oxylipin biosynthesis. {ECO:0000256|RuleBase:RU003975}. MetaCyc:AT3G45140-MONOMER; R-ATH-2142691;R-ATH-2142696;R-ATH-2142700;R-ATH-2142712;R-ATH-2142770;R-ATH-6798695; 1.13.11.12; 1.13.11.12,1.13.11.- 102046,85905 Lipoxygenase 2, chloroplastic (AtLOX2) (EC 1.13.11.12),Lipoxygenase (EC 1.13.11.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; cytoplasm [GO:0005737]; linoleate 13S-lipoxygenase activity [GO:0016165]; metal ion binding [GO:0046872]; green leaf volatile biosynthetic process [GO:0010597]; jasmonic acid biosynthetic process [GO:0009695]; lipid oxidation [GO:0034440]; oxylipin biosynthetic process [GO:0031408]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; response to herbivore [GO:0080027]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],metal ion binding [GO:0046872]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702]; oxylipin biosynthetic process [GO:0031408] DEVELOPMENTAL STAGE: Expression is sharply reduced in leaves during leaf senescence. {ECO:0000269|PubMed:11891244}. TISSUE SPECIFICITY: In leaves and inflorescences but not abundant in seeds, roots and stems. {ECO:0000269|PubMed:17369372}. locus:2096915; AT3G45140 Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development pest resistance and senescence or responses to wounding (By similarity) Lipoxygenase 7, chloroplastic (EC 1.13.11.12),Probable lipoxygenase 8, chloroplastic (EC 1.13.11.12),Os08g0509100 protein (cDNA clone:J023138I11, full insert sequence),Lipoxygenase (EC 1.13.11.-),LOX12 (Os12g0560200 protein) (Fragment),Lipoxygenase (EC 1.13.11.-) (Fragment),Os12g0559934 protein P38419,Q84YK8,B7EL67,Q6H7Q6,Q2QNN5,C0L8H3,A0A0P0VG02,A0A0N7KU75,A0A0P0YB83 LOXC1_ORYSJ,LOXC2_ORYSJ,B7EL67_ORYSJ,Q6H7Q6_ORYSJ,Q2QNN5_ORYSJ,C0L8H3_ORYSJ,A0A0P0VG02_ORYSJ,A0A0N7KU75_ORYSJ,A0A0P0YB83_ORYSJ CM-LOX1 LOX2.1 Os08g0508800 LOC_Os08g39840 B1168A08.24,CM-LOX2 Os08g0509100 LOC_Os08g39850 B1168A08.28-1 B1168A08.28-2 OSJNBa0016N23.103-1 OSJNBa0016N23.103-2,Os08g0509100 OSNPB_080509100,Os02g0194700 OJ1225_F07.1 OSNPB_020194700,LOC_Os12g37260 Os12g0559200 OSNPB_120559200,Os12g0560200 OSNPB_120560200,Os02g0194700 OSNPB_020194700,Os12g0559934 OSNPB_120559934,Os12g0559200 OSNPB_120559200 FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. This lipoxygenase introduces molecular oxygen exclusively into the C-13 position of linoleic and linolenic acids. {ECO:0000269|PubMed:7508918}.,FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. It catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure (By similarity). {ECO:0000250}.,FUNCTION: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. {ECO:0000256|RuleBase:RU003975}. ENOG411DRTZ BGLU44,BGLU43 Q9LV33,Q9LV34,A0A1I9LMX6,A0A1I9LMY0,A0A1I9LMX7,A0A1I9LMX9,A0A1I9LMX8 BGL44_ARATH,BGL43_ARATH,A0A1I9LMX6_ARATH,A0A1I9LMY0_ARATH,A0A1I9LMX7_ARATH,A0A1I9LMX9_ARATH,A0A1I9LMX8_ARATH Beta-glucosidase 44 (AtBGLU44) (EC 3.2.1.21),Beta-glucosidase 43 (AtBGLU43) (EC 3.2.1.21),Beta glucosidase 43 FUNCTION: Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-mannoside, cellobiose, 4-methylumbelliferyl-beta-D-glucoside, laminarin, amygdalin, esculin and gentiobiose. {ECO:0000269|PubMed:15604686}. ARA:AT3G18070-MONOMER; R-ATH-189085; 3.2.1.21 58983,57244,56496,43497,26750,39105,35958 Beta-glucosidase 44 (AtBGLU44) (EC 3.2.1.21),Beta-glucosidase 43 (AtBGLU43) (EC 3.2.1.21),Beta glucosidase 43 cell wall [GO:0005618]; cytosolic ribosome [GO:0022626]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity [GO:0080081]; amygdalin beta-glucosidase activity [GO:0047668]; beta-gentiobiose beta-glucosidase activity [GO:0080083]; beta-glucosidase activity [GO:0008422]; beta-mannosidase activity [GO:0004567]; cellobiose glucosidase activity [GO:0080079]; esculin beta-glucosidase activity [GO:0080082]; metal ion binding [GO:0046872]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2092767;,locus:2092752; AT3G18080,AT3G18070 beta-glucosidase Beta-glucosidase 26 (Os7bglu26) (EC 3.2.1.21),Beta-glucosidase 1 (Os1bglu1) (EC 3.2.1.21),Os03g0323350 protein,Os01g0508000 protein (Fragment),Os07g0656200 protein A3BMZ5,Q5QMT0,C7J0A6,A0A0P0V384,A0A0P0XA50 BGL26_ORYSJ,BGL01_ORYSJ,C7J0A6_ORYSJ,A0A0P0V384_ORYSJ,A0A0P0XA50_ORYSJ BGLU26 Os07g0656200 LOC_Os07g46280 OsJ_25416,BGLU1 Os01g0508000 LOC_Os01g32364 OSJNBa0094H06.33,Os03g0323350 OSNPB_030323350,Os01g0508000 OSNPB_010508000,Os07g0656200 OSNPB_070656200 FUNCTION: Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-mannoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, cello-oligosaccharides, laminari-oligosaccharides and sophorose. {ECO:0000269|PubMed:19766588}. ENOG411DRTX ALMT12 O49696 ALMTC_ARATH Aluminum-activated malate transporter 12 (AtALMT12) (Quick anion channel 1) DISRUPTION PHENOTYPE: Impaired stomatal closure resulting in a wilty phenotype. {ECO:0000269|PubMed:20154005}. Wilty phenotype consistent with impaired stomatal regulation. Stomatal closure was suppressed in response to darkness calcium and exogenous ABA. Stomata are defective in drought-induced closure. Abnormal stomatal regulation in response to darkness, CO2, and ABA-R. Hedrich-2010 FUNCTION: Malate-sensitive anion transporter permeable to chloride, nitrate, sulfate and malate. Involved in dark-, CO(2)-, abscisic acid- and water-deficient-induced stomatal closure. Belongs to the R-type anion channels. {ECO:0000269|PubMed:20154005, ECO:0000269|PubMed:20626656}. MISCELLANEOUS: Malate functions as a gating modifier as well as a permeating substrate. 62310 Aluminum-activated malate transporter 12 (AtALMT12) (Quick anion channel 1) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; anion transmembrane transporter activity [GO:0008509]; malate transmembrane transporter activity [GO:0015140]; stomatal movement [GO:0010118]; sulfate transport [GO:0008272] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and pollen. Mainly detected in the roots vascular stele and in the leaves guard cells. {ECO:0000269|PubMed:20154005, ECO:0000269|PubMed:20626656}. locus:2141065; AT4G17970 Aluminum-activated malate transporter Os10g0572100 protein Q8S7M8 Q8S7M8_ORYSJ LOC_Os10g42180 Os10g0572100 OsJ_32545 OSJNBa0095C07.34 OSNPB_100572100 ENOG411DRTY BBX19,BBX18 C0SVM5,Q9SJU5,A0A1P8B3D4,F4JUJ1 BBX19_ARATH,BBX18_ARATH,A0A1P8B3D4_ARATH,F4JUJ1_ARATH B-box zinc finger protein 19 (Protein DOUBLE B-BOX 1B) (Protein SALT TOLERANCE HOMOLOG 5),B-box zinc finger protein 18 (Protein DOUBLE B-BOX 1A) (Protein SALT TOLERANCE HOMOLOG 4),B-box type zinc finger family protein FUNCTION: Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.,FUNCTION: Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. 20147,18891,17128,25117 B-box zinc finger protein 19 (Protein DOUBLE B-BOX 1B) (Protein SALT TOLERANCE HOMOLOG 5),B-box zinc finger protein 18 (Protein DOUBLE B-BOX 1A) (Protein SALT TOLERANCE HOMOLOG 4),B-box type zinc finger family protein nucleus [GO:0005634]; transcription factor activity, transcription factor binding [GO:0000989]; zinc ion binding [GO:0008270]; negative regulation of photomorphogenesis [GO:0010100]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor activity, transcription factor binding [GO:0000989]; zinc ion binding [GO:0008270]; cellular heat acclimation [GO:0070370]; cellular response to blue light [GO:0071483]; negative regulation of photomorphogenesis [GO:0010100]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; zinc ion binding [GO:0008270],intracellular [GO:0005622]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; circadian rhythm [GO:0007623]; photomorphogenesis [GO:0009640]; regulation of transcription, DNA-templated [GO:0006355]; vegetative to reproductive phase transition of meristem [GO:0010228] TISSUE SPECIFICITY: Expressed in vasculature of leaves and petioles. {ECO:0000269|PubMed:20872270}. locus:2050130;,locus:2120277; AT4G38960,AT2G21320 Zinc finger (B-box type) family protein Os09g0527900 protein (cDNA clone:J033148H23, full insert sequence),Os09g0527900 protein Q651Z9,A0A0P0XPB9 Q651Z9_ORYSJ,A0A0P0XPB9_ORYSJ Os09g0527900 OJ1439_F07.29 OsJ_30084 OSNPB_090527900,Os09g0527900 OSNPB_090527900 ENOG411DRTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oxysterol-binding protein-related protein 2A-like Os08g0154900 protein (Putative oxysterol binding protein),Os10g0554100 protein (Fragment) Q6ZJR8,A0A0P0XX25 Q6ZJR8_ORYSJ,A0A0P0XX25_ORYSJ Os08g0154900 Os08g0154900 OJ1177_E11.3 OSNPB_080154900,Os10g0554100 OSNPB_100554100 ENOG411DRTG ABCC15,ABCC5,ABCC9 Q7FB56,Q7GB25,Q9M1C7,A0A1P8AT08,A0A1I9LTC2,A0A1I9LTC1,F4I454 AB15C_ARATH,AB5C_ARATH,AB9C_ARATH,A0A1P8AT08_ARATH,A0A1I9LTC2_ARATH,A0A1I9LTC1_ARATH,F4I454_ARATH Putative ABC transporter C family member 15 (ABC transporter ABCC.15) (AtABCC15) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 15) (Glutathione S-conjugate-transporting ATPase 15) (Putative multidrug resistance-associated protein 15),ABC transporter C family member 5 (ABC transporter ABCC.5) (AtABCC5) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 5) (Glutathione S-conjugate-transporting ATPase 5) (Multidrug resistance-associated protein 5),ABC transporter C family member 9 (ABC transporter ABCC.9) (AtABCC9) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 9) (Glutathione S-conjugate-transporting ATPase 9) (Multidrug resistance-associated protein 9),Multidrug resistance-associated protein 5,Multidrug resistance-associated protein 9 DISRUPTION PHENOTYPE: Increase water use efficiency (PubMed:12943546). Low phytic acid levels in seed tissue (PubMed:19797057). {ECO:0000269|PubMed:12943546, ECO:0000269|PubMed:19797057}. Short roots; Increased lateral root formation-E. Martinoia-2001 FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}.,FUNCTION: Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition (PubMed:11296221, PubMed:11855639, PubMed:12943546, PubMed:14684837). High-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytic acid storage. Required for phytic acid accumulation in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds (PubMed:19797057). {ECO:0000269|PubMed:11296221, ECO:0000269|PubMed:11855639, ECO:0000269|PubMed:12943546, ECO:0000269|PubMed:14684837, ECO:0000269|PubMed:19797057}. ARA:AT3G60970-MONOMER;,ARA:AT1G04120-MONOMER;,ARA:AT3G60160-MONOMER; 3.6.3.44 117251,168574,168210,164606,154236,164218,168062 Putative ABC transporter C family member 15 (ABC transporter ABCC.15) (AtABCC15) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 15) (Glutathione S-conjugate-transporting ATPase 15) (Putative multidrug resistance-associated protein 15),ABC transporter C family member 5 (ABC transporter ABCC.5) (AtABCC5) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 5) (Glutathione S-conjugate-transporting ATPase 5) (Multidrug resistance-associated protein 5),ABC transporter C family member 9 (ABC transporter ABCC.9) (AtABCC9) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 9) (Glutathione S-conjugate-transporting ATPase 9) (Multidrug resistance-associated protein 9),Multidrug resistance-associated protein 5,Multidrug resistance-associated protein 9 integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; sulfonylurea receptor activity [GO:0008281]; xenobiotic-transporting ATPase activity [GO:0008559]; abscisic acid-activated signaling pathway involved in stomatal movement [GO:1901527]; cellular potassium ion homeostasis [GO:0030007]; response to salt stress [GO:0009651]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; response to nematode [GO:0009624]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] DEVELOPMENTAL STAGE: In flowers, present in anthers central vascular strand of the filament and in connecting tissues of the pollen sacs. Also present at the silique attachment site of the pedicel. {ECO:0000269|PubMed:11296221}. TISSUE SPECIFICITY: Ubiquitous, mostly in vascular tissues and epidermis, including guard cells. {ECO:0000269|PubMed:11296221, ECO:0000269|PubMed:12430019, ECO:0000269|PubMed:14684837}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}. locus:2100987;,locus:2020235;,locus:2101452; AT3G60970,AT1G04120,AT3G60160 ABC transporter C family member ABC transporter C family member 13 (OsABCC13) (EC 3.6.3.-) (Multidrug resistance-associated protein 13) (OsMRP13) (OsMRP5) (Protein LOW PHYTIC ACID 2),Os04g0588700 protein (Fragment),Os03g0142800 protein (Fragment) Q10RX7,Q0JAM7,A0A0P0VSX4 AB13C_ORYSJ,Q0JAM7_ORYSJ,A0A0P0VSX4_ORYSJ ABCC13 LPA2 Os03g0142800 LOC_Os03g04920,Os04g0588700 Os04g0588700 OSNPB_040588700,Os03g0142800 OSNPB_030142800 DISRUPTION PHENOTYPE: Strong reduction in seed phytic acid, and strong increase of inorganic phosphate and myo-inositol levels in seeds. Seedling lethality when homozygous. {ECO:0000269|PubMed:19370321}. FUNCTION: ABC transporter that may affect phytic acid transport and compartmentalization. May function directly or indirectly in removing phytic acid from the cytosol or in vesicle trafficking. Required for phytic acid accumulation in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000269|PubMed:19370321}. ENOG411DRTD HAT5 Q02283,O22726 HAT5_ARATH,O22726_ARATH Homeobox-leucine zipper protein HAT5 (HD-ZIP protein ATHB-1) (Homeodomain transcription factor ATHB-1) (Homeodomain-leucine zipper protein HAT5) (HD-ZIP protein 5),F11P17.8 protein (Homeobox-leucine zipper protein-like protein) FUNCTION: Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. 30933,8294 Homeobox-leucine zipper protein HAT5 (HD-ZIP protein ATHB-1) (Homeodomain transcription factor ATHB-1) (Homeodomain-leucine zipper protein HAT5) (HD-ZIP protein 5),F11P17.8 protein (Homeobox-leucine zipper protein-like protein) nucleus [GO:0005634]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; leaf morphogenesis [GO:0009965]; positive regulation of transcription, DNA-templated [GO:0045893]; response to blue light [GO:0009637]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. locus:2084228;,locus:2008505; AT3G01470,AT1G61200 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX16 (HD-ZIP protein HOX16) (Homeodomain transcription factor HOX16) (OsHox16) Q6YWR4 HOX16_ORYSJ HOX16 Os02g0729700 LOC_Os02g49700 OsJ_007974 OSJNBa0072H09.24 P0617A09.3 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411DRTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q8LQT7 Q8LQT7_ORYSJ P0702H08.4 Os01g0529800 OSNPB_010529800 ENOG411DRTB FLA4 Q9SNC3 FLA4_ARATH Fasciclin-like arabinogalactan protein 4 (Protein SALT OVERLY SENSITIVE 5) Thick roots and root tips; Root growth sensitive to salts-J. Zhu-2003 FUNCTION: May be a cell surface adhesion protein that is required for normal cell expansion. 44239 Fasciclin-like arabinogalactan protein 4 (Protein SALT OVERLY SENSITIVE 5) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; external side of plasma membrane [GO:0009897]; plasma membrane [GO:0005886]; polysaccharide binding [GO:0030247]; cell adhesion [GO:0007155]; mucilage biosynthetic process [GO:0010192]; mucilage biosynthetic process involved in seed coat development [GO:0048354]; multidimensional cell growth [GO:0009825]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in all plant organs and tissues, including guard cells in the leaf. {ECO:0000269|PubMed:12509519}. locus:2075185; AT3G46550 fasciclin-like arabinogalactan protein Endosperm specific protein-like (Os01g0841100 protein) (cDNA clone:J033099G20, full insert sequence),Os05g0459700 protein Q5N9U4,A0A0P0WNJ9 Q5N9U4_ORYSJ,A0A0P0WNJ9_ORYSJ P0408C03.33-1 Os01g0841100 OSNPB_010841100,Os05g0459700 OSNPB_050459700 ENOG411DRTC Q9SX96 Q9SX96_ARATH At1g47640/F16N3_6 (F16N3.6 protein) (Seven transmembrane domain protein) (Uncharacterized protein At1g47640) 25309 At1g47640/F16N3_6 (F16N3.6 protein) (Seven transmembrane domain protein) (Uncharacterized protein At1g47640) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739] locus:2015393; AT1G47640 transmembrane protein 147-like Expressed protein (Os03g0766000 protein) (cDNA clone:001-038-E03, full insert sequence) (cDNA clone:001-207-A06, full insert sequence) Q10EM0 Q10EM0_ORYSJ Os03g0766000 LOC_Os03g55730 OsJ_12710 OSNPB_030766000 ENOG411DRTA Q9LK08,Q9T0K7,A0A1I9LQE2,A0A1I9LQE0,A0A1I9LQD9,A0A1I9LQE1 HIBC7_ARATH,HIBC6_ARATH,A0A1I9LQE2_ARATH,A0A1I9LQE0_ARATH,A0A1I9LQD9_ARATH,A0A1I9LQE1_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial (EC 3.1.2.-),3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial (EC 3.1.2.-),ATP-dependent caseinolytic (Clp) protease/crotonase family protein ARA:AT3G24360-MONOMER;,ARA:AT4G13360-MONOMER; R-ATH-70895; 3.1.2.- 45740,46251,31989,37817,34214,34361 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial (EC 3.1.2.-),3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial (EC 3.1.2.-),ATP-dependent caseinolytic (Clp) protease/crotonase family protein membrane [GO:0016020]; mitochondrion [GO:0005739]; 3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860],cytosol [GO:0005829]; mitochondrion [GO:0005739]; 3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860],3-hydroxyisobutyryl-CoA hydrolase activity [GO:0003860]; peptidase activity [GO:0008233] locus:2087218;,locus:2142050; AT3G24360,AT4G13360 3-hydroxyisobutyryl-CoA hydrolase-like protein Os06g0594100 protein (Putative 3-hydroxyisobutyryl-coenzyme A hydrolase) (cDNA clone:J023125B09, full insert sequence) Q69UF2 Q69UF2_ORYSJ P0652A05.9-1 P0502H06.44-1 Os06g0594100 OSNPB_060594100 ENOG411DRTN CYCJ18 Q9C5X2 CCJ18_ARATH Cyclin-J18 27300 Cyclin-J18 cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cell cycle [GO:0051726] DEVELOPMENTAL STAGE: Expressed in 7 day- and 14 day old seedlings. {ECO:0000269|PubMed:11389963}. locus:1009023203; AT2G01905 cell division Cyclin-J18-like Q0DTM7 CCJ18_ORYSJ Os03g0237900 LOC_Os03g13480 OJ1081D05.11 OsJ_009690 ENOG411DRTM NDB2,NDB4,NDB1,NDB3 Q94BV7,Q9SKT7,Q1JPL4,F4JJJ3,A0A1P8B6J0,A0A1P8B848,F4JGL5 NDB2_ARATH,NDB4_ARATH,NDB1_ARATH,NDB3_ARATH,A0A1P8B6J0_ARATH,A0A1P8B848_ARATH,F4JGL5_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB2) (NADH:ubiquinone reductase (non-electrogenic) NDB2),External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB4) (NADH:ubiquinone reductase (non-electrogenic) NDB4),External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB1) (NADH:ubiquinone reductase (non-electrogenic) NDB1),External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB3) (NADH:ubiquinone reductase (non-electrogenic) NDB3),NAD(P)H dehydrogenase B1,NAD(P)H dehydrogenase B3,NAD(P)H dehydrogenase B2 DISRUPTION PHENOTYPE: Lower reactive oxygen species formation and altered phenotype (e.g. growth rate, root:shoot ratios and leaf area). Lower leaf area early in development followed by a prompt subsequent increase in leaf area leading to larger leaves in mature plants. Better tolerance to salinity stress. These phenotypes are probably due to an enhanced expression of NDB2 and AOX. {ECO:0000269|PubMed:21659327}. FUNCTION: Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity). Calcium-dependent NAD(P)H dehydrogenase; more efficient on NADH. Binds calcium ions. {ECO:0000250, ECO:0000269|PubMed:17673460}.,FUNCTION: Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity). NAD(P)H dehydrogenase; more efficient on NADH. {ECO:0000250, ECO:0000269|PubMed:17673460, ECO:0000269|PubMed:21659327}.,FUNCTION: Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity). Calcium-dependent NAD(P)H dehydrogenase. Binds calcium ions. {ECO:0000250, ECO:0000269|PubMed:17673460}.,FUNCTION: Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane. {ECO:0000250}. ARA:AT4G05020-MONOMER;,ARA:AT2G20800-MONOMER;,ARA:AT4G28220-MONOMER; 1.6.5.9 65059,65372,63314,65164,55784,65036,69243 External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB2) (NADH:ubiquinone reductase (non-electrogenic) NDB2),External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB4) (NADH:ubiquinone reductase (non-electrogenic) NDB4),External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB1) (NADH:ubiquinone reductase (non-electrogenic) NDB1),External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial (EC 1.6.5.9) (External alternative NADH dehydrogenase NDB3) (NADH:ubiquinone reductase (non-electrogenic) NDB3),NAD(P)H dehydrogenase B1,NAD(P)H dehydrogenase B3,NAD(P)H dehydrogenase B2 mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; calcium ion binding [GO:0005509]; oxidoreductase activity [GO:0016491]; oxidation-reduction process [GO:0055114],extrinsic component of mitochondrial inner membrane [GO:0031314]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; plastid [GO:0009536]; calcium ion binding [GO:0005509]; oxidoreductase activity [GO:0016491]; oxidation-reduction process [GO:0055114],extrinsic component of mitochondrial inner membrane [GO:0031314]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; peroxisome [GO:0005777]; calcium ion binding [GO:0005509]; oxidoreductase activity [GO:0016491]; oxidation-reduction process [GO:0055114],calcium ion binding [GO:0005509]; oxidoreductase activity [GO:0016491],extrinsic component of mitochondrial inner membrane [GO:0031314]; mitochondrion [GO:0005739]; calcium ion binding [GO:0005509]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Mostly expressed in seedlings and roots and, to a lower extent, in cotyledons, leaves, stems, buds and flowers. {ECO:0000269|PubMed:12972666, ECO:0000269|PubMed:16258072}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, stems, buds and flowers and, to a lower extent, in stems and leaves. {ECO:0000269|PubMed:12972666, ECO:0000269|PubMed:16258072}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves, stems, buds and flowers. {ECO:0000269|PubMed:12972666, ECO:0000269|PubMed:16258072}.,TISSUE SPECIFICITY: Expressed at low levels in seedlings, roots, stems, buds and flowers and, to a lower extent, in leaves and cotyledons. {ECO:0000269|PubMed:12972666, ECO:0000269|PubMed:14701923, ECO:0000269|PubMed:16258072}. locus:2051431;,locus:2123713;,locus:2119667;,locus:2138371; AT4G05020,AT2G20800,AT4G28220,AT4G21490 Dehydrogenase Os06g0684000 protein (Putative external rotenone-insensitive NADPH dehydrogenase),Os05g0331200 protein (Putative NADPH dehydrogenase) (cDNA clone:J023127O13, full insert sequence),Os08g0141400 protein (Putative NADH dehydrogenase) (cDNA clone:J023142K02, full insert sequence),Os06g0684000 protein Q655G1,Q5W745,Q6YZ09,A0A0P0X045 Q655G1_ORYSJ,Q5W745_ORYSJ,Q6YZ09_ORYSJ,A0A0P0X045_ORYSJ P0009H10.17-1 Os06g0684000 OsJ_22405 OSNPB_060684000,Os05g0331200 OJ1005_D04.1 OJ1675_H07.8 OsJ_18089 OSNPB_050331200,Os08g0141400 OJ1368_G08.31 OSNPB_080141400 P0473D02.16,Os06g0684000 OSNPB_060684000 ENOG411DRTJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein Dof-type zinc finger protein 07 (Os03g0276300 protein) (Fragment) C7DQD8 C7DQD8_ORYSJ Os03g0276300 OSNPB_030276300 ENOG411DRTK PCMP-H11 Q9C6T2 PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920 68596 Pentatricopeptide repeat-containing protein At1g31920 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2034456; AT1G31920 Pentatricopeptide repeat-containing protein Os02g0697500 protein,Os02g0697500 protein (Fragment) Q6Z8F9,A0A0P0VNC1 Q6Z8F9_ORYSJ,A0A0P0VNC1_ORYSJ P0459B01.5-1 Os02g0697500 OSNPB_020697500,Os02g0697500 OSNPB_020697500 ENOG411DRTH PME21,PME28 Q8GX86,Q3E8Z8 PME21_ARATH,PME28_ARATH Probable pectinesterase/pectinesterase inhibitor 21 [Includes: Pectinesterase inhibitor 21 (Pectin methylesterase inhibitor 21); Pectinesterase 21 (PE 21) (EC 3.1.1.11) (Pectin methylesterase 21) (AtPME21)],Putative pectinesterase/pectinesterase inhibitor 28 [Includes: Pectinesterase inhibitor 28 (Pectin methylesterase inhibitor 28); Pectinesterase 28 (PE 28) (EC 3.1.1.11) (Pectin methylesterase 28) (AtPME28)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT3G05610-MONOMER;,ARA:AT5G27870-MONOMER; 3.1.1.11 72917,78477 Probable pectinesterase/pectinesterase inhibitor 21 [Includes: Pectinesterase inhibitor 21 (Pectin methylesterase inhibitor 21); Pectinesterase 21 (PE 21) (EC 3.1.1.11) (Pectin methylesterase 21) (AtPME21)],Putative pectinesterase/pectinesterase inhibitor 28 [Includes: Pectinesterase inhibitor 28 (Pectin methylesterase inhibitor 28); Pectinesterase 28 (PE 28) (EC 3.1.1.11) (Pectin methylesterase 28) (AtPME28)] cell periphery [GO:0071944]; cell wall [GO:0005618]; integral component of membrane [GO:0016021]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] TISSUE SPECIFICITY: Expressed in flower buds. {ECO:0000269|PubMed:16622707}. locus:2078057;,locus:2143340; AT3G05610,AT5G27870 pectinesterase NA NA NA NA NA NA NA ENOG411DRTI KDTA Q8VZA5,A0A1P8BCS9,A0A1P8BCT3 KDTA_ARATH,A0A1P8BCS9_ARATH,A0A1P8BCT3_ARATH Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial (AtKdtA) (Kdo transferase A) (EC 2.4.99.12) (EC 2.4.99.13) (Bifunctional Kdo transferase) (Kdo-lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase) (Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase),KDO transferase A DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but plants lacking KDTA accumulate high levels of tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). {ECO:0000269|PubMed:20124190, ECO:0000269|PubMed:21709257}. FUNCTION: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the transfer of two 3-deoxy-D-manno-octulosonate (Kdo) residues from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses. {ECO:0000305}. PATHWAY: Glycolipid biosynthesis; KDO(2)-lipid A biosynthesis; KDO(2)-lipid A from CMP-3-deoxy-D-manno-octulosonate and lipid IV(A): step 1/4. {ECO:0000269|PubMed:21709257}.; PATHWAY: Glycolipid biosynthesis; KDO(2)-lipid A biosynthesis; KDO(2)-lipid A from CMP-3-deoxy-D-manno-octulosonate and lipid IV(A): step 2/4. {ECO:0000269|PubMed:21709257}. ARA:AT5G03770-MONOMER; 2.4.99.12;2.4.99.13; 2.4.99.12; 2.4.99.13 49888,36189,42025 Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial (AtKdtA) (Kdo transferase A) (EC 2.4.99.12) (EC 2.4.99.13) (Bifunctional Kdo transferase) (Kdo-lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase) (Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase),KDO transferase A mitochondrion [GO:0005739]; transferase activity, transferring glycosyl groups [GO:0016757]; Kdo2-lipid A biosynthetic process [GO:0036104]; lipid A biosynthetic process [GO:0009245],transferase activity [GO:0016740] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:20124190}. locus:2144643; AT5G03770 3-deoxy-d-manno-octulosonic-acid Os01g0857300 protein A0A0P0VAM2 A0A0P0VAM2_ORYSJ Os01g0857300 OSNPB_010857300 ENOG411DRT6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0233300 protein (Protein kinase domain containing protein) Q8S5X8 Q8S5X8_ORYSJ OJ1175C11.10 Os03g0233300 LOC_Os03g13080 OsJ_10042 OSNPB_030233300 ENOG411DRT7 F4IGS5,A0A1P8B0I1,A0A1P8B0I6 F4IGS5_ARATH,A0A1P8B0I1_ARATH,A0A1P8B0I6_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein 27836,20159,22157 RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2042067; AT2G27790 nucleic acid binding protein Os02g0105000 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:006-305-H01, full insert sequence),Os02g0105000 protein (Fragment) Q6YPG3,A0A0N7KEJ0 Q6YPG3_ORYSJ,A0A0N7KEJ0_ORYSJ OJA1212_C06.21-1 OJ1212_C06.20-1 Os02g0105000 OJ1359_D06.1-1 OsJ_05020 OSNPB_020105000,Os02g0105000 OSNPB_020105000 ENOG411DRT4 MEE49 Q9M125 Q9M125_ARATH AT4g01560/F11O4_6 (At4g01560) (Ribosomal RNA processing Brix domain protein) (Uncharacterized protein AT4g01560) 39848 AT4g01560/F11O4_6 (At4g01560) (Ribosomal RNA processing Brix domain protein) (Uncharacterized protein AT4g01560) cytosol [GO:0005829]; nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]; rRNA primary transcript binding [GO:0042134]; embryo development ending in seed dormancy [GO:0009793]; maturation of 5.8S rRNA [GO:0000460]; maturation of LSU-rRNA [GO:0000470]; ribosomal large subunit assembly [GO:0000027] locus:2116992; AT4G01560 ribosome production factor Os06g0137500 protein (cDNA clone:J023145C13, full insert sequence),Os06g0137500 protein (Putative RNA processing factor 1) Q0DES6,Q5VPH4 Q0DES6_ORYSJ,Q5VPH4_ORYSJ Os06g0137500 Os06g0137500 OSNPB_060137500,P0548D03.36-1 Os06g0137500 OSJNBa0041F13.6-1 OSNPB_060137500 ENOG411DRT5 Q8VZQ0 NRX3_ARATH Probable nucleoredoxin 3 (AtNrx3) (EC 1.8.1.8) FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 1.8.1.8 44963 Probable nucleoredoxin 3 (AtNrx3) (EC 1.8.1.8) cytoplasm [GO:0005737]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454] locus:2128141; AT4G31240 protein-disulfide reductase activity Probable nucleoredoxin 3 (OsNrx3) (EC 1.8.1.8),Os04g0608600 protein (Fragment) Q7XPE8,A0A0P0WEX0 NRX3_ORYSJ,A0A0P0WEX0_ORYSJ Os04g0608600 LOC_Os04g51920 OSJNBa0060N03.13,Os04g0608600 OSNPB_040608600 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411DRT2 B9DHK3,A0A1I9LQK8,F4J3J5 B9DHK3_ARATH,A0A1I9LQK8_ARATH,F4J3J5_ARATH AT5G14540 protein (Basic salivary proline-rich-like protein (DUF1421)),Proline-rich receptor-like kinase, putative (DUF1421) 59098,41378,55493 AT5G14540 protein (Basic salivary proline-rich-like protein (DUF1421)),Proline-rich receptor-like kinase, putative (DUF1421) cytosol [GO:0005829],kinase activity [GO:0016301] locus:2222622;,locus:2084213; AT5G14540,AT3G01560 Protein of unknown function (DUF1421) Os01g0169900 protein (Vegetative cell wall protein gp1-like) (cDNA clone:J023110A06, full insert sequence),Os05g0169400 protein (Fragment) Q5VQG6,Q0DKE7 Q5VQG6_ORYSJ,Q0DKE7_ORYSJ Os01g0169900 Os01g0169900 OJ1276_B06.36 OsJ_00537 OSNPB_010169900,Os05g0169400 Os05g0169400 OSNPB_050169400 ENOG411DRT3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DDT NA NA NA NA NA NA NA ENOG411DRT0 NUP98B,NUP98A F4ID16,Q8RY25,A0A1P8AN64 NU98B_ARATH,NU98A_ARATH,A0A1P8AN64_ARATH Nuclear pore complex protein NUP98B (Nucleoporin 98B) (Nucleoporin autopeptidase),Nuclear pore complex protein NUP98A (Nucleoporin 98A) (Nucleoporin autopeptidase),Nucleoporin autopeptidase MISCELLANEOUS: Unlike in mammals and yeast, NUP96 and NUP98 are not translated as a polyprotein. {ECO:0000305}. 103372,106308,102685 Nuclear pore complex protein NUP98B (Nucleoporin 98B) (Nucleoporin autopeptidase),Nuclear pore complex protein NUP98A (Nucleoporin 98A) (Nucleoporin autopeptidase),Nucleoporin autopeptidase nuclear envelope [GO:0005635]; nuclear pore cytoplasmic filaments [GO:0044614]; nuclear localization sequence binding [GO:0008139]; nucleocytoplasmic transporter activity [GO:0005487]; RNA binding [GO:0003723]; structural constituent of nuclear pore [GO:0017056]; mRNA transport [GO:0051028]; posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000973]; protein import into nucleus [GO:0006606]; RNA export from nucleus [GO:0006405]; telomere tethering at nuclear periphery [GO:0034398],cytoplasm [GO:0005737]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; nuclear pore cytoplasmic filaments [GO:0044614]; nucleus [GO:0005634]; nuclear localization sequence binding [GO:0008139]; nucleocytoplasmic transporter activity [GO:0005487]; RNA binding [GO:0003723]; structural constituent of nuclear pore [GO:0017056]; mRNA export from nucleus [GO:0006406]; posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000973]; protein import into nucleus [GO:0006606]; regulation of shade avoidance [GO:1902446]; telomere tethering at nuclear periphery [GO:0034398],nuclear pore [GO:0005643]; transport [GO:0006810] locus:2202887;,locus:2012788; AT1G59660,AT1G10390 Nucleoporin autopeptidase Os12g0165900 protein B9GC17 B9GC17_ORYSJ Os12g0165900 OsJ_35340 OSNPB_120165900 ENOG411DRT1 CBP60C,CBP60D,CBP60B C0SV51,Q0WVV6,Q9FKL6 CB60C_ARATH,CB60D_ARATH,CB60B_ARATH Calmodulin-binding protein 60 C,Calmodulin-binding protein 60 D,Calmodulin-binding protein 60 B FUNCTION: Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes. {ECO:0000250|UniProtKB:F4K2R6}. 70200,67591,72364 Calmodulin-binding protein 60 C,Calmodulin-binding protein 60 D,Calmodulin-binding protein 60 B nucleus [GO:0005634]; calmodulin binding [GO:0005516]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; response to stress [GO:0006950]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in stems, flowers and root. {ECO:0000269|PubMed:11782485}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and root. {ECO:0000269|PubMed:11782485}.,TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, developing seeds and root. {ECO:0000269|PubMed:11782485}. locus:2054000;,locus:2117557;,locus:2174522; AT2G18750,AT4G25800,AT5G57580 calmodulin binding protein Os02g0562300 protein (Putative calmodulin-binding protein) (cDNA clone:J033023A22, full insert sequence),OSJNBa0058G03.4 protein (Os04g0444200 protein),Os02g0177800 protein (Putative calmodulin-binding protein),Os02g0562300 protein (Fragment),Os02g0177800 protein (Fragment) Q6YU05,Q7XRM0,Q6ETN1,A0A0P0VKI6,A0A0P0VFI5 Q6YU05_ORYSJ,Q7XRM0_ORYSJ,Q6ETN1_ORYSJ,A0A0P0VKI6_ORYSJ,A0A0P0VFI5_ORYSJ Os02g0562300 OsJ_07158 OSNPB_020562300 P0435E12.42,Os04g0444200 Os04g0444200 OSJNBa0058G03.4 OSNPB_040444200,Os02g0177800 Os02g0177800 OSNPB_020177800 P0504A05.26,Os02g0562300 OSNPB_020562300,Os02g0177800 OSNPB_020177800 ENOG411DRT8 CNX1,B73 Q39054,A0A1P8BGU1 CNX1_ARATH,A0A1P8BGU1_ARATH Molybdopterin biosynthesis protein CNX1 (Molybdenum cofactor biosynthesis enzyme CNX1) [Includes: Molybdopterin molybdenumtransferase (MPT Mo-transferase) (EC 2.10.1.1) (Domain E); Molybdopterin adenylyltransferase (MPT adenylyltransferase) (EC 2.7.7.75) (Domain G)],Molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) FUNCTION: Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. {ECO:0000269|PubMed:12590921, ECO:0000269|PubMed:15306815, ECO:0000269|PubMed:15504727, ECO:0000269|PubMed:16636046}. PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. R-ATH-947581; 2.10.1.1;2.7.7.75; 2.10.1.1; 2.7.7.75 71279,52531 Molybdopterin biosynthesis protein CNX1 (Molybdenum cofactor biosynthesis enzyme CNX1) [Includes: Molybdopterin molybdenumtransferase (MPT Mo-transferase) (EC 2.10.1.1) (Domain E); Molybdopterin adenylyltransferase (MPT adenylyltransferase) (EC 2.7.7.75) (Domain G)],Molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) cytosol [GO:0005829]; ATP binding [GO:0005524]; molybdenum ion binding [GO:0030151]; molybdopterin adenylyltransferase activity [GO:0061598]; molybdopterin molybdotransferase activity [GO:0061599]; nitrate reductase activity [GO:0008940]; auxin-activated signaling pathway [GO:0009734]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; molybdenum incorporation into molybdenum-molybdopterin complex [GO:0018315]; molybdopterin cofactor biosynthetic process [GO:0032324]; response to metal ion [GO:0010038],Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; molybdopterin cofactor biosynthetic process [GO:0032324] locus:2147157; AT5G20990 Molybdopterin biosynthesis protein Os04g0661600 protein,Os04g0661600 protein (Fragment) C7J0Y1,A0A0P0WFX4 C7J0Y1_ORYSJ,A0A0P0WFX4_ORYSJ Os04g0661600 Os04g0661600 OSNPB_040661600,Os04g0661600 OSNPB_040661600 ENOG411DRT9 CYP37 P82869,A0A1I9LQ22,A0A1I9LQ23 CYP37_ARATH,A0A1I9LQ22_ARATH,A0A1I9LQ23_ARATH Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic (PPIase CYP37) (EC 5.2.1.8) (Rotamase CYP37) (Thylakoid lumen PPIase of 38 kDa) (TLP38) (p38),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 50483,39526,35045 Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic (PPIase CYP37) (EC 5.2.1.8) (Rotamase CYP37) (Thylakoid lumen PPIase of 38 kDa) (TLP38) (p38),Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457],peptidyl-prolyl cis-trans isomerase activity [GO:0003755],peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Aerial parts. {ECO:0000269|PubMed:15051864}. locus:2090101; AT3G15520 Peptidyl-prolyl cis-trans isomerase Os07g0565600 protein (Putative peptidyl-prolycis-trans isomerase protein) Q7XIJ9,Q7XIK0 Q7XIJ9_ORYSJ,Q7XIK0_ORYSJ OJ1773_H01.112-2 OJ1112_E08.131-2 Os07g0565600 OsJ_24770 OSNPB_070565600,OJ1773_H01.112-1 OJ1112_E08.131-1 Os07g0565600 OSNPB_070565600 ENOG411EMDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1771 NA NA NA NA NA NA NA ENOG411E3KI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EFN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI NA NA NA NA NA NA NA ENOG411EFN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC Os02g0274600 protein (Fragment) A0A0N7KF31 A0A0N7KF31_ORYSJ Os02g0274600 OSNPB_020274600 ENOG411E7I7 O22262 O22262_ARATH DUF3511 domain protein, putative (DUF3511) (Uncharacterized protein At2g47480) (Uncharacterized protein At2g47480/T30B22.22) 12292 DUF3511 domain protein, putative (DUF3511) (Uncharacterized protein At2g47480) (Uncharacterized protein At2g47480/T30B22.22) locus:2062018; AT2G47480 Domain of unknown function (DUF3511) NA NA NA NA NA NA NA ENOG411E7I6 Q8LAJ9,Q8GWC7,F4I1E5 Q8LAJ9_ARATH,Q8GWC7_ARATH,F4I1E5_ARATH At1g22520 (MICOS complex subunit Mic10-like protein (DUF543)),MICOS complex subunit, putative (DUF543) (Uncharacterized protein At1g72165/T9N14_2) (Uncharacterized protein At1g72170),MICOS complex subunit Mic10-like protein (DUF543) 10357,10752,19992 At1g22520 (MICOS complex subunit Mic10-like protein (DUF543)),MICOS complex subunit, putative (DUF543) (Uncharacterized protein At1g72165/T9N14_2) (Uncharacterized protein At1g72170),MICOS complex subunit Mic10-like protein (DUF543) mitochondrion [GO:0005739] locus:2207021;,locus:2009442; AT1G22520,AT1G72170 Domain of unknown function (DUF543) NA NA NA NA NA NA NA ENOG411E7I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0737200 protein,Os02g0737300 protein B9F2W3,Q6Z736 B9F2W3_ORYSJ,Q6Z736_ORYSJ Os02g0737200 OsJ_08307 OSNPB_020737200,Os02g0737300 OsJ_08308 OSNPB_020737300 P0487D09.33 ENOG411E7I4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0542300 protein (cDNA clone:001-103-H03, full insert sequence) Q5TKN9 Q5TKN9_ORYSJ Os05g0542300 OJ1362_G11.18 OsJ_19401 OSNPB_050542300 ENOG411E7I3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysM NA NA NA NA NA NA NA ENOG411E7I1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7I0 Q9SJU8 RT31_ARATH 30S ribosomal protein S31, mitochondrial 10957 30S ribosomal protein S31, mitochondrial mitochondrion [GO:0005739]; plastid [GO:0009536]; ribosome [GO:0005840]; plastid translation [GO:0032544] locus:2050105; AT2G21290 30S ribosomal protein S31 30S ribosomal protein S31, mitochondrial P47909 RT31_ORYSJ Os09g0528100 LOC_Os09g35900 OJ1439_F07.33 OsJ_30086 ENOG411E7I9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0239500 protein,Os02g0279900 protein,Os02g0279851 protein Q7XHP6,Q6ET27,A0A0P0VHN0 Q7XHP6_ORYSJ,Q6ET27_ORYSJ,A0A0P0VHN0_ORYSJ P0565A07.137 P0523A04.109 Os07g0239500 OsJ_23657 OSNPB_070239500,P0444A09.32 Os02g0279900 OSNPB_020279900,Os02g0279851 OSNPB_020279851 ENOG411E7I8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chaperone protein DnaJ NA NA NA NA NA NA NA ENOG411E7IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA This protein is a component of the reaction center of photosystem II (By similarity) Photosystem II reaction center protein J (PSII-J) P12189 PSBJ_ORYSJ psbJ LOC_Osp1g00490 FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. {ECO:0000255|HAMAP-Rule:MF_01305}. ENOG411E7IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Scavenger mRNA decapping enzyme C-term binding NA NA NA NA NA NA NA ENOG411E7ID NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0624701 protein A0A0P0WEZ9 A0A0P0WEZ9_ORYSJ Os04g0624701 OSNPB_040624701 ENOG411E7IA Q9SIL9 Q9SIL9_ARATH Uncharacterized protein At2g20500 (Uncharacterized protein At2g20500/T13C7.9) 16228 Uncharacterized protein At2g20500 (Uncharacterized protein At2g20500/T13C7.9) locus:2054814; AT2G20500 NA NA NA NA NA NA NA NA ENOG411E7IM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E7IK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411E7IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7II Q8GYN2 Q8GYN2_ARATH Chaperone (Uncharacterized protein At5g15805) 10102 Chaperone (Uncharacterized protein At5g15805) locus:1005716167; AT5G15802 NA NA NA NA NA NA NA NA ENOG411E7IH Q8L7Z6 Q8L7Z6_ARATH AT3g54680/T5N23_40 (Proteophosphoglycan-like protein) 22751 AT3g54680/T5N23_40 (Proteophosphoglycan-like protein) locus:2102430; AT3G54680 NA NA NA NA NA NA NA NA ENOG411E7IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7IU Q8LEN7 Q8LEN7_ARATH Glutamate racemase (Uncharacterized protein At3g19550) 12358 Glutamate racemase (Uncharacterized protein At3g19550) response to stress [GO:0006950] locus:2101515; AT3G19550 NA NA NA NA NA NA NA NA ENOG411E7IP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7IZ GASA10 Q8LFM2,O80641 GASAA_ARATH,GASA8_ARATH Gibberellin-regulated protein 10 (GAST1 protein homolog 10),Gibberellin-regulated protein 8 (GAST1 protein homolog 8) FUNCTION: Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. {ECO:0000250}. 9746,9440 Gibberellin-regulated protein 10 (GAST1 protein homolog 10),Gibberellin-regulated protein 8 (GAST1 protein homolog 8) extracellular region [GO:0005576]; gibberellic acid mediated signaling pathway [GO:0009740] TISSUE SPECIFICITY: Expressed in vasculature of rosette leaves and roots, cotyledon and root tips and developing seeds. {ECO:0000269|PubMed:17284469}.,TISSUE SPECIFICITY: Expressed in roots and developing seeds. {ECO:0000269|PubMed:17284469}. locus:505006706;,locus:2039732; AT5G59845,AT2G39540 Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411E7IY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411E3TK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DXRP PIR,PIR121 Q5S2C3,B3H6L9 PIR_ARATH,B3H6L9_ARATH Protein PIR (PIR of plants) (Protein KLUNKER) (AtSRA1) (Protein PIROGI),Transcription activator FUNCTION: Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the ARP2/3 complex. Interacts with the active form of RHO-family GTPases. R-ATH-6798695; 145488,118058 Protein PIR (PIR of plants) (Protein KLUNKER) (AtSRA1) (Protein PIROGI),Transcription activator SCAR complex [GO:0031209]; actin cytoskeleton organization [GO:0030036]; actin nucleation [GO:0045010]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed in roots, root hairs, hypocotyls, cotyledons, stems, leaves, trichomes and flowers. {ECO:0000269|PubMed:15294869, ECO:0000269|PubMed:15296760, ECO:0000269|PubMed:15316111, ECO:0000269|PubMed:15516496}. locus:2146193; AT5G18410 Cytoplasmic Fragile-X interacting family NA NA NA NA NA NA NA ENOG411DXRV Q9T002,Q9T003 Q9T002_ARATH,Q9T003_ARATH O-methyltransferase family protein (O-methyltransferase-like protein) FUNCTION: Methyltransferase which catalyzes the transfer of a methyl group onto N-acetylserotonin, producing melatonin (N-acetyl-5-methoxytryptamine). Does not seem to possess caffeate O-methyltransferase activity. {ECO:0000269|PubMed:26484897}. ARA:AT4G35150-MONOMER;,ARA:AT4G35160-MONOMER; R-ATH-209931; 36260,42614 O-methyltransferase family protein (O-methyltransferase-like protein) O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438],cytoplasm [GO:0005737]; acetylserotonin O-methyltransferase activity [GO:0017096]; protein dimerization activity [GO:0046983]; melatonin biosynthetic process [GO:0030187] locus:2132801;,locus:2132806; AT4G35150,AT4G35160 O-methyltransferase family 2 protein NA NA NA NA NA NA NA ENOG411DXRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0657600 protein (Fragment) A0A0P0X9V3 A0A0P0X9V3_ORYSJ Os07g0657600 OSNPB_070657600 ENOG411DXRT ITPK4 O80568 ITPK4_ARATH Inositol 1,3,4-trisphosphate 5/6-kinase 4 (AtItpk-4) (Inositol-triphosphate 5/6-kinase 4) (Ins(1,3,4)P(3) 5/6-kinase 4) (EC 2.7.1.159) (Inositol-tetrakisphosphate 1-kinase 4) DISRUPTION PHENOTYPE: Low inositol hexakisphosphate (phytate) levels in seed tissue. {ECO:0000269|PubMed:21698461}. FUNCTION: Kinase that can phosphorylate the inositol polyphosphate Ins(1,3,4)P3 to form InsP4. Also phosphorylates a racemic mixture of Ins(1,4,6)P3 and Ins(3,4,6)P3 to form InsP4. Does not display inositol 3,4,5,6-tetrakisphosphate 1-kinase activity, but possesses inositol 1,4,5,6-tetrakisphosphate and inositol 1,3,4,5-tetrakisphosphate isomerase activity (PubMed:17698066). Ins(1,3,4,6)P4 is an essential molecule in the hexakisphosphate (InsP6) pathway (By similarity). {ECO:0000250|UniProtKB:Q13572, ECO:0000269|PubMed:17698066}. ARA:AT2G43980-MONOMER; R-ATH-1855167;R-ATH-1855204;R-ATH-983231; 2.7.1.159; 2.7.1.159 54180 Inositol 1,3,4-trisphosphate 5/6-kinase 4 (AtItpk-4) (Inositol-triphosphate 5/6-kinase 4) (Ins(1,3,4)P(3) 5/6-kinase 4) (EC 2.7.1.159) (Inositol-tetrakisphosphate 1-kinase 4) cytosol [GO:0005829]; ATP binding [GO:0005524]; inositol tetrakisphosphate 1-kinase activity [GO:0047325]; inositol-1,3,4-trisphosphate 5-kinase activity [GO:0052726]; inositol-1,3,4-trisphosphate 6-kinase activity [GO:0052725]; magnesium ion binding [GO:0000287]; inositol trisphosphate metabolic process [GO:0032957]; myo-inositol hexakisphosphate biosynthetic process [GO:0010264] TISSUE SPECIFICITY: Expressed in roots, leaf vasculature, cauline leaves, flower buds and siliques. {ECO:0000269|PubMed:17698066}. locus:2051744; AT2G43980 Inositol-tetrakisphosphate 1-kinase Inositol-tetrakisphosphate 1-kinase 6 (EC 2.7.1.134) (Inositol 1,3,4-trisphosphate 5/6-kinase 6) (Inositol-triphosphate 5/6-kinase 6) (Ins(1,3,4)P(3) 5/6-kinase 6) (OsITP5/6K-6) (OsITPK6) (EC 2.7.1.159),Os09g0518700 protein Q0J0B2,A0A0N7KR45 ITPK6_ORYSJ,A0A0N7KR45_ORYSJ ITPK6 Os09g0518700 LOC_Os09g34300 OSJNOa211K08.2 P0498F03.7,Os09g0518700 OSNPB_090518700 FUNCTION: Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds. {ECO:0000250|UniProtKB:Q84Y01}. ENOG411EHQ2 Q3EBB7,A0A1I9LQ29 Q3EBB7_ARATH,A0A1I9LQ29_ARATH At3g06435 (Expressed protein),Expressed protein 23017,10942 At3g06435 (Expressed protein),Expressed protein integral component of membrane [GO:0016021] locus:1006230203; AT3G06435 NA NA NA NA NA NA NA NA ENOG411EMF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rho termination factor N-terminal domain NA NA NA NA NA NA NA ENOG411DXR2 NUP50B,NUP50A Q9LW88,Q9C829 NU50B_ARATH,NU50A_ARATH Nuclear pore complex protein NUP50B (Nucleoporin 50B),Nuclear pore complex protein NUP50A (Nucleoporin 50A) FUNCTION: Probably involved in nucleocytoplasmic transport via its interactions with importins and Ran, rather than by forming part of the nuclear pore complex (NPC) scaffolding. {ECO:0000305|PubMed:21189294}. 49108,46592 Nuclear pore complex protein NUP50B (Nucleoporin 50B),Nuclear pore complex protein NUP50A (Nucleoporin 50A) cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; Ran GTPase binding [GO:0008536]; intracellular transport [GO:0046907]; mRNA transport [GO:0051028]; protein transport [GO:0015031],cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; Ran GTPase binding [GO:0008536]; intracellular transport [GO:0046907]; mRNA transport [GO:0051028]; protein transport [GO:0015031] locus:2093372;,locus:2018204; AT3G15970,AT1G52380 Ran-binding protein Os05g0349500 protein Q5W645 Q5W645_ORYSJ Os05g0349500 OsJ_18165 OSJNBa0077J17.2 OSJNBb0052F16.17 OSNPB_050349500 ENOG411DXR3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Exocyst complex component Os08g0566700 protein Q6Z1P1 Q6Z1P1_ORYSJ Os08g0566700 Os08g0566700 OsJ_28326 OSJNBa0044E16.28 OSNPB_080566700 ENOG411DXR0 SPS4,ATSPS4F F4JLK2,A0A1P8B6E2,A0A1P8B6D9 SPSA4_ARATH,A0A1P8B6E2_ARATH,A0A1P8B6D9_ARATH Probable sucrose-phosphate synthase 4 (EC 2.4.1.14) (Sucrose phosphate synthase 4F) (AtSPS4F) (UDP-glucose-fructose-phosphate glucosyltransferase),Sucrose-phosphate synthase family protein FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation. PATHWAY: Glycan biosynthesis; sucrose biosynthesis; sucrose from D-fructose 6-phosphate and UDP-alpha-D-glucose: step 1/2. 2.4.1.14 118878,98332,95083 Probable sucrose-phosphate synthase 4 (EC 2.4.1.14) (Sucrose phosphate synthase 4F) (AtSPS4F) (UDP-glucose-fructose-phosphate glucosyltransferase),Sucrose-phosphate synthase family protein plasma membrane [GO:0005886]; sucrose synthase activity [GO:0016157]; sucrose-phosphate synthase activity [GO:0046524]; sucrose biosynthetic process [GO:0005986],sucrose synthase activity [GO:0016157]; sucrose-phosphate synthase activity [GO:0046524]; sucrose metabolic process [GO:0005985] locus:2124680; AT4G10120 sucrose-phosphate synthase Probable sucrose-phosphate synthase 5 (EC 2.4.1.14) (Sucrose phosphate synthase 5F) (OsSPS5F) (UDP-glucose-fructose-phosphate glucosyltransferase),Os11g0236100 protein (Fragment),Os06g0634800 protein (Fragment) Q53JI9,A0A0P0Y112,A0A0P0WZ68 SPSA5_ORYSJ,A0A0P0Y112_ORYSJ,A0A0P0WZ68_ORYSJ SPS5 SPS11 Os11g0236100 LOC_Os11g12810,Os11g0236100 OSNPB_110236100,Os06g0634800 OSNPB_060634800 FUNCTION: Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. Involved in the regulation of carbon partitioning in the leaves of plants. May regulate the synthesis of sucrose and therefore play a major role as a limiting factor in the export of photoassimilates out of the leaf. Plays a role for sucrose availability that is essential for plant growth and fiber elongation (By similarity). {ECO:0000250}. ENOG411DXR7 BG_PPAP Q9FHX5,F4K020 E1310_ARATH,F4K020_ARATH Glucan endo-1,3-beta-glucosidase 10 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 10) ((1->3)-beta-glucanase 10) (Beta-1,3-endoglucanase 10) (Beta-1,3-glucanase 10) (Putative plasmodesmal associated protein) (AtBG_ppap),Beta-1,3-glucanase FUNCTION: Plasmodesmal-associated membrane beta-1,3-glucanase involved in plasmodesmal callose degradation and functions in the gating of plasmodesmata. {ECO:0000269|PubMed:17270015, ECO:0000269|PubMed:23656331}. 3.2.1.39 45358,45063 Glucan endo-1,3-beta-glucosidase 10 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 10) ((1->3)-beta-glucanase 10) (Beta-1,3-endoglucanase 10) (Beta-1,3-glucanase 10) (Putative plasmodesmal associated protein) (AtBG_ppap),Beta-1,3-glucanase anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; endoplasmic reticulum [GO:0005783]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell communication [GO:0007154]; cell wall organization [GO:0071555]; defense response [GO:0006952],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Highly expressed in flowers and siliques. {ECO:0000269|PubMed:17270015}. locus:2165705; AT5G42100 Glycosyl hydrolases family 17 Glycosyl hydrolases family 17 protein, expressed (Os03g0246100 protein) (cDNA clone:002-118-C04, full insert sequence) Q10P58 Q10P58_ORYSJ Os03g0246100 LOC_Os03g14210 Os03g0246100 OSNPB_030246100 ENOG411DXR4 CEL5,CEL3 Q2V4L8,Q9C9H5,A0A1P8AQR5 GUN3_ARATH,GUN9_ARATH,A0A1P8AQR5_ARATH Endoglucanase 3 (EC 3.2.1.4) (Cellulase 5) (AtCEL5) (Endo-1,4-beta glucanase 3),Endoglucanase 9 (EC 3.2.1.4) (Cellulase 3) (AtCEL3) (Endo-1,4-beta glucanase 9),Cellulase 5 FUNCTION: May be involved in the sloughing (cell-cell separation) of the root cap cells from root tip. {ECO:0000269|PubMed:15604746}. MISCELLANEOUS: The sloughing of root-cap cells from the root tip is a process of cell-cell separation that entails cell wall break down. It is important in plant development because it assists the growing root in penetrating the soil. ARA:AT1G22880-MONOMER;,ARA:AT1G71380-MONOMER; 3.2.1.4; 3.2.1.4 53662,53274,37544 Endoglucanase 3 (EC 3.2.1.4) (Cellulase 5) (AtCEL5) (Endo-1,4-beta glucanase 3),Endoglucanase 9 (EC 3.2.1.4) (Cellulase 3) (AtCEL3) (Endo-1,4-beta glucanase 9),Cellulase 5 cell wall [GO:0005618]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],cell wall [GO:0005618]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] TISSUE SPECIFICITY: Specifically expressed in root cap cells. {ECO:0000269|PubMed:15604746}. locus:2017704;,locus:2825314; AT1G22880,AT1G71380 Endoglucanase Endoglucanase 11 (EC 3.2.1.4) (Endo-1,4-beta glucanase 11) (OsGLU4) Q7XTH4 GUN11_ORYSJ GLU4 Os04g0443300 LOC_Os04g36610 OsJ_023072 P0041A24.5 ENOG411EEN4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEN6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EEN7 AtXYP7 Q7EB72 Q7EB72_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At2g48130) (Xylogen like protein 7) 18853 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Uncharacterized protein At2g48130) (Xylogen like protein 7) anchored component of membrane [GO:0031225]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2039366; AT2G48130 Protease inhibitor seed storage lipid transfer protein (LTP) family protein NA NA NA NA NA NA NA ENOG411EEN0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411EEN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEN2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EEN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif NA NA NA NA NA NA NA ENOG411EEN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0129200 protein,Os12g0155800 protein,F-box domain, putative (Os11g0154200 protein),Os12g0155900 protein,Os07g0140766 protein,Os11g0154100 protein Q6Z6Y9,Q2QXI2,Q53QG5,A0A0P0Y739,A0A0P0X246,A0A0P0XZX9 Q6Z6Y9_ORYSJ,Q2QXI2_ORYSJ,Q53QG5_ORYSJ,A0A0P0Y739_ORYSJ,A0A0P0X246_ORYSJ,A0A0P0XZX9_ORYSJ P0576F08.20 Os02g0129200 OSNPB_020129200,Os12g0155800 LOC_Os12g05960 OSNPB_120155800,Os11g0154200 LOC_Os11g05590 OsJ_33007 OSNPB_110154200,Os12g0155900 OSNPB_120155900,Os07g0140766 OSNPB_070140766,Os11g0154100 OSNPB_110154100 ENOG411EEN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation DNA repair DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones also called histone code and nucleosome remodeling Histone H2B.5,Os01g0149400 protein (Fragment) Q94JE1,A0A0P0UY08 H2B5_ORYSJ,A0A0P0UY08_ORYSJ H2B.5 Os01g0153300 LOC_Os01g06010 OsJ_000408 P0030H07.24,Os01g0149400 OSNPB_010149400 FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. ENOG411EENT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EENU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EENV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EENW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized ACR COG1678 NA NA NA NA NA NA NA ENOG411EENP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EENQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DnaJ (Hsp40) homolog subfamily NA NA NA NA NA NA NA ENOG411EENR CP12-1 O22914 CP121_ARATH Calvin cycle protein CP12-1, chloroplastic (CP12 domain-containing protein 1) (Chloroplast protein 12-1) FUNCTION: Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues. {ECO:0000269|PubMed:20399532}. MISCELLANEOUS: Binds copper and nickel ions. Copper ions catalyze the oxidation of reduced thiol groups and thus promote formation of the disulfide bonds required for linker activity (By similarity). {ECO:0000250}. 13487 Calvin cycle protein CP12-1, chloroplastic (CP12 domain-containing protein 1) (Chloroplast protein 12-1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; protein complex [GO:0043234]; copper ion binding [GO:0005507]; nickel cation binding [GO:0016151]; negative regulation of reductive pentose-phosphate cycle [GO:0080153]; reductive pentose-phosphate cycle [GO:0019253]; response to sucrose [GO:0009744] DEVELOPMENTAL STAGE: In flowers, expressed in the sepals and the style. In siliques, present in the tip and the base, in funiculus and in mature seeds. Present in both dried and imbibed seeds, especially in the seed coat and micropyle. {ECO:0000269|PubMed:18974062}. TISSUE SPECIFICITY: Mostly expressed in flowers, hypocotyl, cotyledons, leaves, stems, and flower stalks. Barely detectable in roots and siliques. Present in root tips and lateral roots. Accumulates in the cotyledons of etiolated seedlings. {ECO:0000269|PubMed:15533878, ECO:0000269|PubMed:18974062}. locus:2065220; AT2G47400 CP12 NA NA NA NA NA NA NA ENOG411EENX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0019J05.11 protein (Os04g0283600 protein) Q7XW83 Q7XW83_ORYSJ OSJNBa0019J05.11 Os04g0283600 OSNPB_040283600 ENOG411EENY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1677) Os02g0229900 protein Q6H530 Q6H530_ORYSJ Os02g0229900 OsJ_05974 OSJNBb0035N08.24 OSNPB_020229900 ENOG411EENZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) NA NA NA NA NA NA NA ENOG411EEND ERF8 Q9MAI5 ERF79_ARATH Ethylene-responsive transcription factor 8 (AtERF8) (Ethylene-responsive element-binding factor 8) (EREBP-8) FUNCTION: Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. 20025 Ethylene-responsive transcription factor 8 (AtERF8) (Ethylene-responsive element-binding factor 8) (EREBP-8) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2009655; AT1G53170 AP2 NA NA NA NA NA NA NA ENOG411EENE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dirigent-like protein NA NA NA NA NA NA NA ENOG411EENF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycolipid transfer protein (GLTP) NA NA NA NA NA NA NA ENOG411EENG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EENA Q1PDK3,Q9LTK5 Q1PDK3_ARATH,Q9LTK5_ARATH RING/U-box superfamily protein (Zinc finger protein-like protein),RING/U-box superfamily protein 32146,22630 RING/U-box superfamily protein (Zinc finger protein-like protein),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2145086;,locus:2145096; AT5G52140,AT5G52150 Inherit from euNOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411EENB ERF069,ERF070 Q8W4I5,Q9C995 ERF69_ARATH,ERF70_ARATH Ethylene-responsive transcription factor ERF069,Ethylene-responsive transcription factor ERF070 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 17536,17951 Ethylene-responsive transcription factor ERF069,Ethylene-responsive transcription factor ERF070 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:505006142;,locus:2026301; AT1G22985,AT1G71130 AT1G71130 (E 4e-046) AP2 domain-containing transcription factor NA NA NA NA NA NA NA ENOG411EENC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain Os08g0229150 protein,Os08g0229100 protein A0A0P0XDR5,A0A0P0XDR1 A0A0P0XDR5_ORYSJ,A0A0P0XDR1_ORYSJ Os08g0229150 OSNPB_080229150,Os08g0229100 OSNPB_080229100 ENOG411EENM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EENN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integral membrane protein S linking to the trans Golgi network NA NA NA NA NA NA NA ENOG411EENH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transposase family tnp2 NA NA NA NA NA NA NA ENOG411EENI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EENJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Staphylococcal nuclease homologue NA NA NA NA NA NA NA ENOG411EENK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Male sterility protein NA NA NA NA NA NA NA ENOG411EJW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1295) NA NA NA NA NA NA NA ENOG411EDWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tRNA-splicing endonuclease positive Expressed protein (Os10g0540800 protein) (cDNA clone:J023024H07, full insert sequence),Helicase-like protein (Os01g0532400 protein),Os11g0649100 protein,Os11g0648500 protein,Os12g0148301 protein,Os11g0649000 protein Q7XCM3,Q5JLH1,A0A0P0Y4W4,A0A0P0Y503,A0A0P0Y7E1,A0A0N7KTA4 Q7XCM3_ORYSJ,Q5JLH1_ORYSJ,A0A0P0Y4W4_ORYSJ,A0A0P0Y503_ORYSJ,A0A0P0Y7E1_ORYSJ,A0A0N7KTA4_ORYSJ Os10g0540800 LOC_Os10g39500 OsJ_32313 OSNPB_100540800,Os01g0532400 OJ1619_F12.11 OsJ_34063 OSNPB_010532400,Os11g0649100 OSNPB_110649100,Os11g0648500 OSNPB_110648500,Os12g0148301 OSNPB_120148301,Os11g0649000 OSNPB_110649000 ENOG411EAG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EAG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0501000 protein,Os05g0270900 protein,Os05g0270875 protein (Fragment) A0A0P0XHR4,A0A0P0WK01,A0A0N7KKF7 A0A0P0XHR4_ORYSJ,A0A0P0WK01_ORYSJ,A0A0N7KKF7_ORYSJ Os08g0501000 OSNPB_080501000,Os05g0270900 OSNPB_050270900,Os05g0270875 OSNPB_050270875 ENOG411EAG1 MSI17.60 F4J910,Q9FKM9,Q9FKM8,A0A1P8AS20,A0A1P8AXZ9,A0A1P8ARZ1,F4I847,F4IFF6,F4I848 F4J910_ARATH,Q9FKM9_ARATH,Q9FKM8_ARATH,A0A1P8AS20_ARATH,A0A1P8AXZ9_ARATH,A0A1P8ARZ1_ARATH,F4I847_ARATH,F4IFF6_ARATH,F4I848_ARATH Disease resistance protein (TIR-NBS-LRR class) family protein,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Similarity to disease resistance protein (Toll-Interleukin-Resistance (TIR) domain family protein),ATP binding protein,Disease resistance protein (TIR-NBS-LRR class) family 121112,120859,24229,74109,123028,77883,82042,137918,78026 Disease resistance protein (TIR-NBS-LRR class) family protein,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like),Similarity to disease resistance protein (Toll-Interleukin-Resistance (TIR) domain family protein),ATP binding protein,Disease resistance protein (TIR-NBS-LRR class) family ADP binding [GO:0043531],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; signal transduction [GO:0007165],ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2094498;,locus:2173293;,locus:1009023443;,locus:2206465;,locus:2053405; AT3G25510,AT5G38340,AT5G38344,AT1G57650,AT2G14080 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411EAG0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DR6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin assembly protein Os05g0549000 protein,Clathrin assembly protein AP180 short form-like (Os01g0694900 protein) (cDNA clone:001-113-H02, full insert sequence) Q0DG77,Q5N9P9 Q0DG77_ORYSJ,Q5N9P9_ORYSJ Os05g0549000 Os05g0549000 OsJ_19442 OSNPB_050549000,Os01g0694900 OsJ_03107 OSNPB_010694900 P0431H09.25 ENOG411DR6Z MYC6.10,F16G20.170:F16G20.180 Q9CAJ7,Q67XV0,Q45GG6,Q8W458,Q45GG5,A0A1P8AWW7,A0A1P8B421,A0A1P8AWU3,F4JNK5 Q9CAJ7_ARATH,Q67XV0_ARATH,Q45GG6_ARATH,Q8W458_ARATH,Q45GG5_ARATH,A0A1P8AWW7_ARATH,A0A1P8B421_ARATH,A0A1P8AWU3_ARATH,F4JNK5_ARATH PLAC8 family protein (Uncharacterized protein At1g63830) (Uncharacterized protein T12P18.15),PLAC8 family protein (Uncharacterized protein At4g23480),PLAC8 family protein,PLAC8 family protein (Uncharacterized protein At4g23470) (Uncharacterized protein F16G20.170:F16G20.180) (mRNA, clone: RAFL21-79-C21) (mRNA, clone: RAFL21-93-K23) (mRNA, clone: RAFL22-91-K13) (mRNA, clone: RAFL23-17-A13) (mRNA, clone: RAFL24-30-P19) 25667,21676,29011,28427,22232,18906,19332,20251,26082 PLAC8 family protein (Uncharacterized protein At1g63830) (Uncharacterized protein T12P18.15),PLAC8 family protein (Uncharacterized protein At4g23480),PLAC8 family protein,PLAC8 family protein (Uncharacterized protein At4g23470) (Uncharacterized protein F16G20.170:F16G20.180) (mRNA, clone: RAFL21-79-C21) (mRNA, clone: RAFL21-93-K23) (mRNA, clone: RAFL22-91-K13) (mRNA, clone: RAFL23-17-A13) (mRNA, clone: RAFL24-30-P19) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886],integral component of membrane [GO:0016021] locus:2195508;,locus:2177921;,locus:2117934; AT1G63830,AT4G23470,AT5G41390 PLAC8 family Os03g0123600 protein (cDNA clone:001-008-B02, full insert sequence) (cDNA clone:006-205-F08, full insert sequence) (cDNA clone:J033032D06, full insert sequence),Os10g0535800 protein (cDNA, clone: J100071P13, full insert sequence) Q10SG5,Q8W2X9 Q10SG5_ORYSJ,Q8W2X9_ORYSJ LOC_Os03g03180 Os03g0123600 OsJ_09229 OSNPB_030123600,OSJNBb0060I05.12 Os10g0535800 LOC_Os10g39100 OsJ_32279 OSNPB_100535800 ENOG411DR6N BFRUCT3,BFRUCT4 Q43348,Q39041,A0A1P8AWL7,A0A1P8AWQ1 INVA3_ARATH,INVA4_ARATH,A0A1P8AWL7_ARATH,A0A1P8AWQ1_ARATH Acid beta-fructofuranosidase 3, vacuolar (At beta fruct3) (AtBETAFRUCT3) (EC 3.2.1.26) (Acid invertase 3) (AI 3) (Acid sucrose hydrolase 3) (Vacuolar invertase 3) (Inv-V3) (VAC-INV 3) (VI 3),Acid beta-fructofuranosidase 4, vacuolar (At beta fruct4) (AtBETAFRUCT4) (EC 3.2.1.26) (Acid invertase 4) (AI 4) (Acid sucrose hydrolase 4) (Vacuolar invertase 4) (Inv-V4) (VAC-INV 4) (VI 4),Glycosyl hydrolases family 32 protein DISRUPTION PHENOTYPE: Reduced carbon fixation rates during the day, but increased respiration during the night (PubMed:20207708). Shorter roots (PubMed:16481625). {ECO:0000269|PubMed:16481625, ECO:0000269|PubMed:20207708}. Significantly shorter roots. 50% reduction in vacuolar invertase (Vac-Inv) activity compared to parental line. Short roots-D. Vreugdenhil-2006 FUNCTION: Possible role in the continued mobilization of sucrose to sink organs. {ECO:0000250|UniProtKB:Q39041}.,FUNCTION: Possible role in the continued mobilization of sucrose to sink organs (PubMed:20207708). Regulates root elongation (PubMed:16481625). {ECO:0000269|PubMed:16481625, ECO:0000269|PubMed:20207708}. PATHWAY: Glycan biosynthesis; sucrose metabolism. {ECO:0000305}. ARA:AT1G62660-MONOMER;,ARA:AT1G12240-MONOMER; 3.2.1.26 72228,73844,53275,60969 Acid beta-fructofuranosidase 3, vacuolar (At beta fruct3) (AtBETAFRUCT3) (EC 3.2.1.26) (Acid invertase 3) (AI 3) (Acid sucrose hydrolase 3) (Vacuolar invertase 3) (Inv-V3) (VAC-INV 3) (VI 3),Acid beta-fructofuranosidase 4, vacuolar (At beta fruct4) (AtBETAFRUCT4) (EC 3.2.1.26) (Acid invertase 4) (AI 4) (Acid sucrose hydrolase 4) (Vacuolar invertase 4) (Inv-V4) (VAC-INV 4) (VI 4),Glycosyl hydrolases family 32 protein integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar lumen [GO:0005775]; vacuole [GO:0005773]; sucrose alpha-glucosidase activity [GO:0004575]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to gibberellin stimulus [GO:0071370]; response to bacterium [GO:0009617]; sucrose metabolic process [GO:0005985],endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; plant-type cell wall [GO:0009505]; plant-type vacuole [GO:0000325]; vacuolar lumen [GO:0005775]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; beta-fructofuranosidase activity [GO:0004564]; sucrose alpha-glucosidase activity [GO:0004575]; abscisic acid-activated signaling pathway [GO:0009738]; cellular response to gibberellin stimulus [GO:0071370]; primary root development [GO:0080022]; response to bacterium [GO:0009617]; sucrose metabolic process [GO:0005985],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] DEVELOPMENTAL STAGE: Expressed during germination et seedling growth. {ECO:0000269|PubMed:15056893}. TISSUE SPECIFICITY: Mostly expressed in stems, roots and flowers, and, to a lower extent, in mature leaves. {ECO:0000269|PubMed:9332372}. locus:2026177;,locus:2201966; AT1G62660,AT1G12240 beta-fructofuranosidase Os04g0535600 protein (cDNA clone:J013001P13, full insert sequence) (cDNA clone:J023147H06, full insert sequence),Os02g0106100 protein (Vacuolar acid invertase),Os04g0535600 protein (Fragment) Q0JBF1,Q6ETD3,A0A0P0WD12 Q0JBF1_ORYSJ,Q6ETD3_ORYSJ,A0A0P0WD12_ORYSJ Os04g0535600 Os04g0535600 OSNPB_040535600,Os02g0106100 OJ1359_D06.20 OSNPB_020106100,Os04g0535600 OSNPB_040535600 ENOG411DR6K VPS52,P2 Q94KD3,Q9FVV6 VP52A_ARATH,VP52B_ARATH Vacuolar protein sorting-associated protein 52 A (AtVPS52) (ARE1-like protein POK) (Protein POKY POLLEN TUBE) (Protein T-DNA TRANSMISSION DEFECT 8),Vacuolar protein sorting-associated protein 52 B (ARE1-like protein P2) DISRUPTION PHENOTYPE: Lethal when homozygous. In hemizygous plants, male gametophytic mutants characterized by very short pollen tubes. Male-specific transmission defect. {ECO:0000269|PubMed:15235115, ECO:0000269|PubMed:18583349}. Male gametophyte defective; Rare embryo defective (inferred)-S. Bonhomme-2008 FUNCTION: Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Required for pollen tube elongation and other polar growth. {ECO:0000250, ECO:0000269|PubMed:15235115, ECO:0000269|PubMed:18583349}.,FUNCTION: May be involved in retrograde transport of early and late endosomes to the late Golgi. {ECO:0000250}. 80938,80713 Vacuolar protein sorting-associated protein 52 A (AtVPS52) (ARE1-like protein POK) (Protein POKY POLLEN TUBE) (Protein T-DNA TRANSMISSION DEFECT 8),Vacuolar protein sorting-associated protein 52 B (ARE1-like protein P2) cytosol [GO:0005829]; endomembrane system [GO:0012505]; endosome membrane [GO:0010008]; GARP complex [GO:0000938]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; Rab GTPase binding [GO:0017137]; syntaxin binding [GO:0019905]; endocytic recycling [GO:0032456]; Golgi to vacuole transport [GO:0006896]; pollen tube growth [GO:0009860]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147]; sexual reproduction [GO:0019953],cytosol [GO:0005829]; endosome membrane [GO:0010008]; GARP complex [GO:0000938]; Golgi membrane [GO:0000139]; Rab GTPase binding [GO:0017137]; syntaxin binding [GO:0019905]; endocytic recycling [GO:0032456]; Golgi to vacuole transport [GO:0006896]; protein transport [GO:0015031]; retrograde transport, endosome to Golgi [GO:0042147] DEVELOPMENTAL STAGE: In seedlings, expressed in the root apex, mostly in the elongation zone and emerging lateral root primordia, in very young leaves and stipules. In flowers, detected from the earliest stages of flower development, before meiosis and gametogenesis and maintained later. As flower bud size reaches 1.6 to 1.7 mm, confined to male gametophytic tissues and female sporophytic tissues, including ovules. At maturity, accumulates in pollen grains within the anthers. At later postpollination stages, expressed in developing seeds. Accumulates in intracellular compartments in both sporophytic and gametophytic tissues (at protein level). {ECO:0000269|PubMed:15235115, ECO:0000269|PubMed:18583349}. TISSUE SPECIFICITY: Mostly expressed in roots and flower buds, and, at low levels, in seeds, whole inflorescence and mature flowers. Also detected in pollen. Present in pollen, buds, leaves, and roots (at protein level). {ECO:0000269|PubMed:15235115, ECO:0000269|PubMed:18583349}.,TISSUE SPECIFICITY: Detected in pollen. {ECO:0000269|PubMed:15235115}. locus:2032343;,locus:2032318; AT1G71270,AT1G71300 vacuolar protein sorting-associated protein 52 ARE1-like protein (Os03g0417900 protein) (Putative Vps52 / Sac2 family protein) (Vps52/Sac2 family protein, putative, expressed) (cDNA clone:J033133M18, full insert sequence) Q7Y1L1 Q7Y1L1_ORYSJ OSJNBb0056B16.16 OSJNBb0028K20.3 LOC_Os03g30460 Os03g0417900 OSNPB_030417900 ENOG411EAGY A0A1I9LMW4,Q5PP30,F4J432,F4J435,F4J434,A0A1I9LPR7 A0A1I9LMW4_ARATH,Q5PP30_ARATH,F4J432_ARATH,F4J435_ARATH,F4J434_ARATH,A0A1I9LPR7_ARATH Cyclopropane-fatty-acyl-phospholipid synthase,At3g23470 (Cyclopropane-fatty-acyl-phospholipid synthase),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ARA:AT3G23470-MONOMER; 55751,52757,35570,51552,56413,52413 Cyclopropane-fatty-acyl-phospholipid synthase,At3g23470 (Cyclopropane-fatty-acyl-phospholipid synthase),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein lipid biosynthetic process [GO:0008610],chloroplast [GO:0009507]; methyltransferase activity [GO:0008168] locus:2088717;,locus:2090915;,locus:2088722; AT3G23470,AT3G23460,AT3G23480 Mycolic acid cyclopropane synthetase NA NA NA NA NA NA NA ENOG411EAGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamine synthetase type III N terminal NA NA NA NA NA NA NA ENOG411EHGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMF9 A0A1P8B158,F4K6C3 A0A1P8B158_ARATH,F4K6C3_ARATH ATP-binding protein,Methyltransferase small domain protein, putative (DUF2431) 15550,29327 ATP-binding protein,Methyltransferase small domain protein, putative (DUF2431) ATP binding [GO:0005524],cytoplasm [GO:0005737]; rRNA (uridine-N3-)-methyltransferase activity [GO:0070042]; rRNA base methylation [GO:0070475] locus:504954949; AT5G56075 Domain of unknown function (DUF2431) NA NA NA NA NA NA NA ENOG411E08M SS3 F4IAG2,F4IAG1 SSY3_ARATH,F4IAG1_ARATH Starch synthase 3, chloroplastic/amyloplastic (AtSS3) (EC 2.4.1.21) (Soluble starch synthase III),Starch synthase 3 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants accumulate increased levels of starch and have starch granules with alterated morphology. {ECO:0000269|PubMed:15908598, ECO:0000269|PubMed:17217470}. Starch excess phenotype in leaves. Altered structure of leaf amylopectin. Increased phosphate content of starch in leaves. It is hypothesized that all of these phenomena result from the increase of activity in one or more of the other starch synthase isoforms upon loss of starch synthase III. Elevated starch levels; Abnormal starch composition; No other phenotypes detected-M. James-2005 FUNCTION: Involved in the synthesis of glycan chains within amylopectin in leaves. May play a regulatory role in the control of starch accumulation in plastids. {ECO:0000269|PubMed:15908598, ECO:0000269|PubMed:18811962, ECO:0000269|PubMed:19666739}. PATHWAY: Glycan biosynthesis; starch biosynthesis. 2.4.1.21; 2.4.1.21 118512,124230 Starch synthase 3, chloroplastic/amyloplastic (AtSS3) (EC 2.4.1.21) (Soluble starch synthase III),Starch synthase 3 amyloplast [GO:0009501]; chloroplast [GO:0009507]; alpha-1,4-glucan synthase activity [GO:0033201]; glycogen (starch) synthase activity [GO:0004373]; identical protein binding [GO:0042802]; starch binding [GO:2001070]; starch synthase activity [GO:0009011]; amylopectin biosynthetic process [GO:0010021]; starch biosynthetic process [GO:0019252],chloroplast [GO:0009507]; glycogen (starch) synthase activity [GO:0004373]; starch binding [GO:2001070]; starch synthase activity [GO:0009011]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:17217470}. locus:2027367; AT1G11720 starch synthase Os04g0624600 protein (Soluble starch synthase III-1),Os04g0624600 protein (Fragment),Os08g0191433 protein Q0J9Z0,A0A0P0WEZ6,A0A0P0XCU3 Q0J9Z0_ORYSJ,A0A0P0WEZ6_ORYSJ,A0A0P0XCU3_ORYSJ SSIII-1 Os04g0624600 OsJ_16226 OSNPB_040624600,Os04g0624600 OSNPB_040624600,Os08g0191433 OSNPB_080191433 ENOG411E08K GLC,GLAUCE Q1PFG7,Q8LDZ6,O80816 Q1PFG7_ARATH,Q8LDZ6_ARATH,O80816_ARATH HXXXD-type acyl-transferase family protein (Transferase-like),HXXXD-type acyl-transferase family protein (Similar to gb|Z84386 anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus),HXXXD-type acyl-transferase family protein (T8F5.23 protein) ARA:AT1G65450-MONOMER; 18667,32257,50506 HXXXD-type acyl-transferase family protein (Transferase-like),HXXXD-type acyl-transferase family protein (Similar to gb|Z84386 anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus),HXXXD-type acyl-transferase family protein (T8F5.23 protein) transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],cytoplasm [GO:0005737]; nucleus [GO:0005634]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; double fertilization forming a zygote and endosperm [GO:0009567] locus:2206340; AT1G65450 Omega-hydroxypalmitate O-feruloyl NA NA NA NA NA NA NA ENOG411E08J CNX1 P29402,Q38798,F4K6M8 CALX1_ARATH,CALX2_ARATH,F4K6M8_ARATH Calnexin homolog 1,Calnexin homolog 2,Calreticulin family protein FUNCTION: Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins (By similarity). {ECO:0000250}. R-ATH-901042; Phagosome (04145),Antigen processing and presentation (04612),Protein processing in endoplasmic reticulum (04141),HTLV-I infection (05166) 60486,60490,61414 Calnexin homolog 1,Calnexin homolog 2,Calreticulin family protein chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; mitochondrion [GO:0005739]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; calcium ion binding [GO:0005509]; carbohydrate binding [GO:0030246]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; carbohydrate binding [GO:0030246]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; calcium ion binding [GO:0005509]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2159223;,locus:2183344; AT5G61790,AT5G07340 Calnexin Calnexin (OSJNBb0012E08.10 protein) (Os04g0402100 protein) (cDNA clone:J023008D14, full insert sequence),Os04g0402100 protein (Fragment) Q7XV86,A0A0P0WA18 Q7XV86_ORYSJ,A0A0P0WA18_ORYSJ Os04g0402100 OSJNBb0012E08.10 OSNPB_040402100,Os04g0402100 OSNPB_040402100 ENOG411E08I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC Os03g0638300 protein (Fragment) C7IZN4 C7IZN4_ORYSJ Os03g0638300 OSNPB_030638300 ENOG411E08D LNK1 A8MQN2 LNK1_ARATH Protein LNK1 (Night light-inducible and clock-regulated 1) DISRUPTION PHENOTYPE: No differences in hypocotyl length when grown in complete darkness, but longer hypocotyls in plants under continuous white or red light (PubMed:23818596). Lengthened circadian cycle (PubMed:25012192). {ECO:0000269|PubMed:23818596, ECO:0000269|PubMed:25012192}. FUNCTION: Transcriptional coactivator necessary for expression of the clock genes PRR5 and TOC1 (PubMed:25012192, PubMed:25848708). Antagonizes REV8 function in the regulation of anthocyanin accumulation (PubMed:25848001). Involved in red light input to the clock (PubMed:25012192). Activates clock-controlled genes with afternoon peak (PubMed:23818596). Mediates light inhibition of hypocotyl elongation (PubMed:23818596). {ECO:0000269|PubMed:23818596, ECO:0000269|PubMed:25012192, ECO:0000269|PubMed:25848001, ECO:0000269|PubMed:25848708}. MISCELLANEOUS: Unable to bind to DNA, but recruited to the evening element (EE)-containing region of the PRR5 and TOC1 promoters through its interaction with the DNA binding proteins REV8 and REV4 (PubMed:25012192, PubMed:25848708). {ECO:0000269|PubMed:25012192, ECO:0000269|PubMed:25848708}.; MISCELLANEOUS: The evening complex (EC) nighttime repressor is implicated in the temperature responsiveness by binding to the LNK1 promoter (PubMed:25332490, PubMed:24690904). Responds also to some extent to a dark/light transition in an EC-independent manner (PubMed:25332490). {ECO:0000269|PubMed:24690904, ECO:0000269|PubMed:25332490}. 68181 Protein LNK1 (Night light-inducible and clock-regulated 1) nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; rhythmic process [GO:0048511]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seedlings, cotyledons, inflorescences and siliques. Highest expression in root tips, young leaves and vasculatur tissues. {ECO:0000269|PubMed:25012192}. locus:2164416; AT5G64170 NA Expressed protein (Os03g0387900 protein) (cDNA clone:J023102F06, full insert sequence),Os03g0387900 protein (Fragment) Q10KE5,A0A0P0VYZ6 Q10KE5_ORYSJ,A0A0P0VYZ6_ORYSJ LOC_Os03g27019 Os03g0387900 OSNPB_030387900,Os03g0387900 OSNPB_030387900 ENOG411DU93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA harpin-induced protein Os06g0163300 protein (cDNA clone:001-008-A10, full insert sequence) (cDNA clone:001-206-H07, full insert sequence) (cDNA clone:J033070N04, full insert sequence) Q5WA73 Q5WA73_ORYSJ Os06g0163300 Os06g0163300 OsJ_20229 OSNPB_060163300 P0681F10.43 ENOG411EHQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E087 SPL8 Q8GXL3,Q3EDL2 SPL8_ARATH,Q3EDL2_ARATH Squamosa promoter-binding-like protein 8,Squamosa promoter binding protein-like 8 Reduced fertility-P. Huijser-2003 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. 36827,27504 Squamosa promoter-binding-like protein 8,Squamosa promoter binding protein-like 8 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; anther development [GO:0048653]; cell differentiation [GO:0030154]; megasporogenesis [GO:0009554]; microsporogenesis [GO:0009556]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872] DEVELOPMENTAL STAGE: Expressed during plant development. During pollen development, required for crosporogenesis that leads to archesporial formation and for the histogenesis of the microsporangia. During ovules development, involved in the transition to meiosis of the megaspore mother cells. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:12671094}. TISSUE SPECIFICITY: Expressed in shoot apical region and early floral tissues. Transcripts levels increase in developing pollen sacs, and decrease in later stage of anther development. Strongly expressed in the placental region of the carpels. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:17093870}. locus:504956101; AT1G02065 Squamosa promoter-binding-like protein Squamosa promoter-binding-like protein 10 Q0DAE8 SPL10_ORYSJ SPL10 Os06g0659100 LOC_Os06g44860 B1047G05.25 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. ENOG411E083 Q6NPL0,A8MS54 Q6NPL0_ARATH,A8MS54_ARATH At4g09040 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At4g09040) (Uncharacterized protein At4g09050),RNA-binding (RRM/RBD/RNP motifs) family protein 34032,27703 At4g09040 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At4g09040) (Uncharacterized protein At4g09050),RNA-binding (RRM/RBD/RNP motifs) family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mRNA binding [GO:0003729],RNA binding [GO:0003723] locus:2122368; AT4G09040 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E081 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF547 Os08g0476100 protein (Fragment),Os08g0476000 protein Q0J512,Q6ZDF7 Q0J512_ORYSJ,Q6ZDF7_ORYSJ Os08g0476100 Os08g0476100 OSNPB_080476100,Os08g0476000 OJ1111_E05.8 OSNPB_080476000 P0451G12.30 ENOG411E080 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Spt20 family Os01g0117800 protein A0A0P0UXU1 A0A0P0UXU1_ORYSJ Os01g0117800 OSNPB_010117800 ENOG411E1DS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger C3HC4 type domain containing protein expressed Os05g0470700 protein (cDNA, clone: J100090O10, full insert sequence),Os01g0830200 protein (Putative ring finger protein 5) (cDNA clone:J013097A17, full insert sequence) (cDNA clone:J023010E11, full insert sequence) Q0DHF0,Q5QLT9 Q0DHF0_ORYSJ,Q5QLT9_ORYSJ Os05g0470700 Os05g0470700 OsJ_18880 OSNPB_050470700,B1088C09.42-1 P0446G04.15-1 Os01g0830200 OsJ_03954 OSNPB_010830200 ENOG411E1DQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: coiled-coil domain containing 39 NA NA NA NA NA NA NA ENOG411E1DW TOM2AH2,TOM2AH1 Q93XY5,Q9SVU4,F4JM26 TET18_ARATH,TET20_ARATH,F4JM26_ARATH Tetraspanin-18 (TOM2A homologous protein 2),Tetraspanin-20 (TOM2A homologous protein 1),Tetraspanin family protein DISRUPTION PHENOTYPE: Slightly reduced efficiency of intracellular multiplication of tobamoviruses (e.g. crucifer strain TMV-Cg), characterized by a reduced amplification of TMV-related RNAs. {ECO:0000269|PubMed:18474569}. FUNCTION: May be involved in the regulation of cell differentiation. {ECO:0000269|PubMed:18474569}.; FUNCTION: Promotes intracellular multiplication of tobamoviruses, probably being a component of the replication complex. {ECO:0000269|PubMed:18474569}. 29721,30977,36235 Tetraspanin-18 (TOM2A homologous protein 2),Tetraspanin-20 (TOM2A homologous protein 1),Tetraspanin family protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773],integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774],integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773] TISSUE SPECIFICITY: Expressed in rosette leaves. {ECO:0000269|PubMed:18474569}. locus:2038997;,locus:2117833; AT2G20230,AT4G28770 NA Os06g0731400 protein (Senescence-associated protein-like) (cDNA clone:J013002M13, full insert sequence),Os06g0731400 protein Q5Z407,A0A0N7KMS8 Q5Z407_ORYSJ,A0A0N7KMS8_ORYSJ B1206D04.21-1 Os06g0731400 OsJ_22750 OSNPB_060731400,Os06g0731400 OSNPB_060731400 ENOG411E1DF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0356900 protein (Putative leucine-rich repeat/extensin 1) Q8LJ87 Q8LJ87_ORYSJ Os01g0356900 OsJ_01725 OSNPB_010356900 P0025H06.16 ENOG411DXE3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3633) LIM domain-containing protein, putative, expressed (Os03g0626600 protein) (Putative LIM domain containing protein) Q5KQN3 Q5KQN3_ORYSJ Os03g0626600 LOC_Os03g42820 Os03g0626600 Os03g42820 OSNPB_030626600 ENOG411DXE2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ClpB_D2-small Os01g0886600 protein (Putative CLP protease regulatory subunit CLPX) Q5N8G6 Q5N8G6_ORYSJ Os01g0886600 Os01g0886600 OSNPB_010886600 P0408G07.32 P0434C04.11 ENOG411DXE1 SRF2 Q9FG24 SRF2_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 2 (Leucine-rich repeat receptor kinase-like protein SRF2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17397538}. MISCELLANEOUS: Cannot functionally replace STRUBBELIG.; MISCELLANEOUS: Over-expression of SRF2 led to male-sterility in cv. Columbia but not in cv. Landsberg. R-ATH-446652; 81299 Protein STRUBBELIG-RECEPTOR FAMILY 2 (Leucine-rich repeat receptor kinase-like protein SRF2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17397538}. locus:2170219; AT5G06820 protein STRUBBELIG-RECEPTOR FAMILY 2-like NA NA NA NA NA NA NA ENOG411DXE0 TFB1-3,TFB1-1 Q9M322,Q3ECP0,A0A1P8ASX6,A0A1P8AST3,A0A1I9LP36 TFB1C_ARATH,TFB1A_ARATH,A0A1P8ASX6_ARATH,A0A1P8AST3_ARATH,A0A1I9LP36_ARATH Probable RNA polymerase II transcription factor B subunit 1-3 (General transcription and DNA repair factor IIH subunit TFB1-3) (AtTFB1-3) (TFIIH subunit TFB1-3),Probable RNA polymerase II transcription factor B subunit 1-1 (General transcription and DNA repair factor IIH subunit TFB1-1) (AtTFB1-1) (TFIIH subunit TFB1-1),BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) FUNCTION: Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. {ECO:0000250|UniProtKB:P32780}. R-ATH-113418;R-ATH-5696395;R-ATH-5696400;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 66386,67514,62146,58648,63562 Probable RNA polymerase II transcription factor B subunit 1-3 (General transcription and DNA repair factor IIH subunit TFB1-3) (AtTFB1-3) (TFIIH subunit TFB1-3),Probable RNA polymerase II transcription factor B subunit 1-1 (General transcription and DNA repair factor IIH subunit TFB1-1) (AtTFB1-1) (TFIIH subunit TFB1-1),BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) core TFIIH complex [GO:0000439]; holo TFIIH complex [GO:0005675]; DNA repair [GO:0006281]; nucleotide-excision repair [GO:0006289]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase II promoter [GO:0006366],core TFIIH complex [GO:0000439]; nucleotide-excision repair [GO:0006289]; transcription, DNA-templated [GO:0006351] locus:2082812;,locus:2020447; AT3G61420,AT1G55750 RNA polymerase II transcription factor B subunit 1-1-like Os08g0338200 protein (cDNA clone:J013129O14, full insert sequence) Q6ZC85 Q6ZC85_ORYSJ Os08g0338200 Os08g0338200 OSNPB_080338200 P0702G08.11 ENOG411DXE7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD Os04g0433900 protein A0A0N7KJ32 A0A0N7KJ32_ORYSJ Os04g0433900 OSNPB_040433900 ENOG411DXE6 ARI8,ARI5,ARI6,ARI7 Q8W468,Q8L829,P0C8K8,Q84RR0,A0A1P8B029,A0A1P8B027,F4IAE4 ARI8_ARATH,ARI5_ARATH,ARI6_ARATH,ARI7_ARATH,A0A1P8B029_ARATH,A0A1P8B027_ARATH,F4IAE4_ARATH Probable E3 ubiquitin-protein ligase ARI8 (EC 2.3.2.-) (ARIADNE-like protein ARI8) (Protein ariadne homolog 8) (RING-type E3 ubiquitin transferase ARI8),Probable E3 ubiquitin-protein ligase ARI5 (EC 2.3.2.-) (ARIADNE-like protein ARI5) (Protein ariadne homolog 5) (RING-type E3 ubiquitin transferase ARI5),Putative E3 ubiquitin-protein ligase ARI6 (EC 2.3.2.-) (ARIADNE-like protein ARI6) (Protein ariadne homolog 6) (RING-type E3 ubiquitin transferase ARI6),Probable E3 ubiquitin-protein ligase ARI7 (EC 2.3.2.-) (ARIADNE-like protein ARI7) (Protein ariadne homolog 7) (RING-type E3 ubiquitin transferase ARI7),IBR domain-containing protein,RING/U-box superfamily protein FUNCTION: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. {ECO:0000250, ECO:0000269|PubMed:12446796}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664; 2.3.2.- 64754,62460,62834,63978,55799,57570,67382 Probable E3 ubiquitin-protein ligase ARI8 (EC 2.3.2.-) (ARIADNE-like protein ARI8) (Protein ariadne homolog 8) (RING-type E3 ubiquitin transferase ARI8),Probable E3 ubiquitin-protein ligase ARI5 (EC 2.3.2.-) (ARIADNE-like protein ARI5) (Protein ariadne homolog 5) (RING-type E3 ubiquitin transferase ARI5),Putative E3 ubiquitin-protein ligase ARI6 (EC 2.3.2.-) (ARIADNE-like protein ARI6) (Protein ariadne homolog 6) (RING-type E3 ubiquitin transferase ARI6),Probable E3 ubiquitin-protein ligase ARI7 (EC 2.3.2.-) (ARIADNE-like protein ARI7) (Protein ariadne homolog 7) (RING-type E3 ubiquitin transferase ARI7),IBR domain-containing protein,RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12529512}. locus:2206315;,locus:2065954;,locus:2198723; AT1G65430,AT1G05890,AT1G63760,AT2G31510 E3 ubiquitin-protein ligase RBR-type E3 ubiquitin transferase (EC 2.3.2.31) (Fragment),RBR-type E3 ubiquitin transferase (EC 2.3.2.31) Q0J0E7,Q6ZIV0 Q0J0E7_ORYSJ,Q6ZIV0_ORYSJ Os09g0513800 OSNPB_090513800,P0666G10.134 Os08g0540300 OJ1211_G06.3 OsJ_28120 OSNPB_080540300 ENOG411DXE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q7XMP4 Q7XMP4_ORYSJ prx57 Os04g0651000 OSJNBb0059K02.17 OSNPB_040651000 ENOG411DXE4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0249300 protein Q0E2D7 Q0E2D7_ORYSJ Os02g0249300 Os02g0249300 OSNPB_020249300 ENOG411DXE9 Q9LHS0 CAP10_ARATH Putative clathrin assembly protein At5g35200 61179 Putative clathrin assembly protein At5g35200 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897] locus:2182432; AT5G35200 Clathrin assembly protein NA NA NA NA NA NA NA ENOG411DXE8 MAPKKK17,MAPKKK15,MAPKKK16 O80888,Q9FLQ2,F4JVS7,A0A1P8BAK9 M3K17_ARATH,Q9FLQ2_ARATH,F4JVS7_ARATH,A0A1P8BAK9_ARATH Mitogen-activated protein kinase kinase kinase 17 (EC 2.7.11.25),Mitogen-activated protein kinase kinase kinase 15 (Similarity to NPK1-related protein kinase),Mitogen-activated protein kinase kinase kinase 16,Mitogen-activated protein kinase kinase kinase 15 DISRUPTION PHENOTYPE: In the double mutant map3k17 map3k18, impaired MPK7 activation mediated by abscisic acid (ABA). {ECO:0000269|PubMed:25720833}. FUNCTION: Component of the abscisic acid (ABA) signaling pathway that may act as ABA signal transducer in the context of abiotic stresses. Triggers MPK7 activation in a MKK3-dependent manner. Mediates the ABA-dependent activation of the MKK3-MPK7 module. {ECO:0000269|PubMed:25720833}. 2.7.11.25 41235,51130,49628,58235 Mitogen-activated protein kinase kinase kinase 17 (EC 2.7.11.25),Mitogen-activated protein kinase kinase kinase 15 (Similarity to NPK1-related protein kinase),Mitogen-activated protein kinase kinase kinase 16,Mitogen-activated protein kinase kinase kinase 15 cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein serine/threonine kinase activity [GO:0004674]; signal transducer, downstream of receptor, with serine/threonine kinase activity [GO:0004702]; abscisic acid-activated signaling pathway [GO:0009738]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; protein autophosphorylation [GO:0046777]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2060246;,locus:2161690;,locus:2116417; AT2G32510,AT5G55090,AT4G26890 Mitogen-activated protein kinase kinase kinase Os05g0545300 protein (Fragment),Os10g0130000 protein,Os02g0322400 protein Q0DG98,A0A0P0XR81,A0A0P0VIC7 Q0DG98_ORYSJ,A0A0P0XR81_ORYSJ,A0A0P0VIC7_ORYSJ Os05g0545300 Os05g0545300 OSNPB_050545300,Os10g0130000 OSNPB_100130000,Os02g0322400 OSNPB_020322400 ENOG411E1DJ PP2C5 Q9XEE8 P2C30_ARATH Probable protein phosphatase 2C 30 (AtPP2C30) (EC 3.1.3.16) (AthPP2C5) Increased stomatal width; Seed germination sensitive to ABA-A. Gust-2010 3.1.3.16 42595 Probable protein phosphatase 2C 30 (AtPP2C30) (EC 3.1.3.16) (AthPP2C5) nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]; abscisic acid-activated signaling pathway [GO:0009738]; stomatal lineage progression [GO:0010440] locus:2065046; AT2G40180 PP2C_SIG NA NA NA NA NA NA NA ENOG411E1DK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0218300 protein (Putative RING-H2 zinc finger protein) Q69QB2 Q69QB2_ORYSJ P0644A02.19 Os06g0218300 OSNPB_060218300 ENOG411E1DN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os06g0663000 protein,Os02g0174400 protein (Fragment) A0A0P0WZK4,A0A0P0VFB2 A0A0P0WZK4_ORYSJ,A0A0P0VFB2_ORYSJ Os06g0663000 OSNPB_060663000,Os02g0174400 OSNPB_020174400 ENOG411E1DM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2C_SIG Probable protein phosphatase 2C 69 (OsPP2C69) (EC 3.1.3.16) Q67J17 P2C69_ORYSJ Os09g0459600 LOC_Os09g28560 B1045B05.36 OsJ_028485 OSJNBa0054F02.14 ENOG411DXES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: low-temperature-induced 65 Os07g0646350 protein (Os07g0646650 protein),Expressed protein (Os10g0505900 protein) A0A0P0X9R2,Q337E2 A0A0P0X9R2_ORYSJ,Q337E2_ORYSJ Os07g0646650 Os07g0646350 OSNPB_070646350 OSNPB_070646650,LOC_Os10g36180 Os10g0505900 OSNPB_100505900 ENOG411DXER Q9ZUU3 PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230 85705 Pentatricopeptide repeat-containing protein At2g37230 chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; response to cold [GO:0009409]; RNA modification [GO:0009451] locus:2049756; AT2G37230 Pentatricopeptide repeat-containing protein Os02g0110400 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:J033023K10, full insert sequence),Os02g0577250 protein Q6Z8Z5,Q69JV8 Q6Z8Z5_ORYSJ,Q69JV8_ORYSJ Os02g0110400 Os02g0110400 OsJ_05062 OSNPB_020110400 P0501G04.11,B1342F01.15 Os02g0577250 OSNPB_020577250 ENOG411DXEQ Q6NLB1,Q8RY82,A0A1P8AXE5,A0A1P8AXG8 FB118_ARATH,FB121_ARATH,A0A1P8AXE5_ARATH,A0A1P8AXG8_ARATH F-box protein At2g26850,F-box protein At2g32560,F-box family protein 43407,43075,37976,34340 F-box protein At2g26850,F-box protein At2g32560,F-box family protein locus:2039498;,locus:2060236; AT2G26850,AT2G32560 F-Box protein ESTs AU081301(E20138) (OSJNBa0036E02.18 protein) (Os01g0281000 protein) (cDNA clone:J013001A01, full insert sequence) Q9LG67 Q9LG67_ORYSJ OSJNBa0036E02.18 Os01g0281000 B1085F09.18 OSNPB_010281000 P0003H10.29 ENOG411DXEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Leaf senescence related protein-like (Os01g0614300 protein) (cDNA clone:001-128-A11, full insert sequence),Os05g0587700 protein Q5ZDY2,A0A0P0WRF9 Q5ZDY2_ORYSJ,A0A0P0WRF9_ORYSJ Os01g0614300 Os01g0614300 OSNPB_010614300 P0410E01.36,Os05g0587700 OSNPB_050587700 ENOG411DXEW Q9SIB5 Q9SIB5_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative ATP-dependent RNA helicase) 55455 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Putative ATP-dependent RNA helicase) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; nucleic acid binding [GO:0003676]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364] locus:2065494; AT2G28600 ATP-dependent RNA helicase ATP-dependent RNA helicase, putative, expressed (Os12g0147500 protein) (cDNA clone:J013075G07, full insert sequence) Q2QXQ5 Q2QXQ5_ORYSJ LOC_Os12g05230 Os12g0147500 OSNPB_120147500 ENOG411DXEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0573000 protein),Os12g0573000 protein Q2QNA4,Q0IMF2 Q2QNA4_ORYSJ,Q0IMF2_ORYSJ Os12g0573000 LOC_Os12g38480 OSNPB_120573000,Os12g0573000 Os12g0573000 OSNPB_120573000 ENOG411DXEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: vacuolar protein Os08g0116700 protein (VPS13-like protein) Q69UI7 Q69UI7_ORYSJ Os08g0116700 OSNPB_080116700 P0470F10.12 ENOG411DXET MAKR4 O80624 MAKR4_ARATH Probable membrane-associated kinase regulator 4 37139 Probable membrane-associated kinase regulator 4 plasma membrane [GO:0005886]; plasmodesma [GO:0009506] locus:2039722; AT2G39370 membrane-associated kinase regulator Os01g0836900 protein (cDNA clone:002-104-H06, full insert sequence) Q5QMH6 Q5QMH6_ORYSJ Os01g0836900 Os01g0836900 OsJ_03998 OSNPB_010836900 P0506B12.36 ENOG411DXEZ Q9LJK4,Q9LT84 U496L_ARATH,U496M_ARATH UPF0496 protein At3g19250,UPF0496 protein At3g19330 40770,43009 UPF0496 protein At3g19250,UPF0496 protein At3g19330 integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2094123;,locus:2090624; AT3G19250,AT3G19330 UPF0496 protein Os04g0405700 protein A0A0P0WA28 A0A0P0WA28_ORYSJ Os04g0405700 OSNPB_040405700 ENOG411DXEY HMGB13,HMGB6,3xHMG-box2 Q9T012,Q9SUP7,F4JPC5 HMG13_ARATH,HMGB6_ARATH,F4JPC5_ARATH High mobility group B protein 13 (Nucleosome/chromatin assembly factor group D 13),High mobility group B protein 6 (Nucleosome/chromatin assembly factor group D 06) (Nucleosome/chromatin assembly factor group D 6) (WRKY transcription factor 53) (AtWRKY53) (WRKY DNA-binding protein 53),HMG (High mobility group) box protein 52303,53231,52545 High mobility group B protein 13 (Nucleosome/chromatin assembly factor group D 13),High mobility group B protein 6 (Nucleosome/chromatin assembly factor group D 06) (Nucleosome/chromatin assembly factor group D 6) (WRKY transcription factor 53) (AtWRKY53) (WRKY DNA-binding protein 53),HMG (High mobility group) box protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700],nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2136103;,locus:2128504; AT4G11080,AT4G23800 high mobility group Os02g0258200 protein,Os02g0258250 protein (Fragment) A0A0P0VHG2,A0A0P0VH81 A0A0P0VHG2_ORYSJ,A0A0P0VH81_ORYSJ Os02g0258200 OSNPB_020258200,Os02g0258250 OSNPB_020258250 ENOG411DXEX CHX1,CHX2 Q9SA37,Q9SAK8 CHX1_ARATH,CHX2_ARATH Cation/H(+) antiporter 1 (Protein CATION/H+ EXCHANGER 1) (AtCHX1),Cation/H(+) antiporter 2 (Protein CATION/H+ EXCHANGER 2) (AtCHX2) FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}. 88909,88204 Cation/H(+) antiporter 1 (Protein CATION/H+ EXCHANGER 1) (AtCHX1),Cation/H(+) antiporter 2 (Protein CATION/H+ EXCHANGER 2) (AtCHX2) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Specifically expressed in pollen. {ECO:0000269|PubMed:15347787}. locus:2032805;,locus:2206360; AT1G16380,AT1G79400 Cation H( ) antiporter Os02g0833500 protein (Putative Na+/H+ antiporter),Os02g0833500 protein Q6ESB5,A0A0P0VRV7 Q6ESB5_ORYSJ,A0A0P0VRV7_ORYSJ OJ1282_E10.12-1 Os02g0833500 OSNPB_020833500,Os02g0833500 OSNPB_020833500 ENOG411DXEC F4J139 F4J139_ARATH ARM repeat superfamily protein 43679 ARM repeat superfamily protein cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2099634; AT3G03440 armadillo beta-catenin repeat family protein NA NA NA NA NA NA NA ENOG411DXEB P4H7,P4H6 Q8L970,F4J0A8,F4J0A6 P4H7_ARATH,P4H6_ARATH,F4J0A6_ARATH Probable prolyl 4-hydroxylase 7 (AtP4H7) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 6 (AtP4H6) (EC 1.14.11.2),Oxoglutarate/iron-dependent oxygenase FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins.,FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. {ECO:0000250|UniProtKB:F4JAU3}. 1.14.11.2; 1.14.11.2 35570,32448,36358 Probable prolyl 4-hydroxylase 7 (AtP4H7) (EC 1.14.11.2),Probable prolyl 4-hydroxylase 6 (AtP4H6) (EC 1.14.11.2),Oxoglutarate/iron-dependent oxygenase endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2088892;,locus:2088887; AT3G28480,AT3G28490 prolyl 4-hydroxylase Os10g0413500 protein (Prolyl 4-hydroxylase, putative, expressed) (cDNA clone:006-311-A08, full insert sequence),Os03g0803500 protein (Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed) (Putative oxidoreductase) (cDNA clone:006-203-E11, full insert sequence),Os03g0166200 protein (Fragment),Os10g0413500 protein (Fragment),Os03g0166100 protein Q109P7,Q84T04,A0A0P0VTI8,A0A0P0XU11,A0A0P0VTI7 Q109P7_ORYSJ,Q84T04_ORYSJ,A0A0P0VTI8_ORYSJ,A0A0P0XU11_ORYSJ,A0A0P0VTI7_ORYSJ Os10g0413500 LOC_Os10g27340 Os10g0413500 OsJ_31503 OSNPB_100413500,Os03g0803500 LOC_Os03g58890 Os03g0803500 OsJ_13003 OSJNBa0087C10.4 OSNPB_030803500,Os03g0166200 OSNPB_030166200,Os10g0413500 OSNPB_100413500,Os03g0166100 OSNPB_030166100 ENOG411DXEA POLA2 F4HTP2 F4HTP2_ARATH DNA polymerase alpha subunit B Embryo defective; Preglobular-D. Meinke-2009 FUNCTION: May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery. {ECO:0000256|PIRNR:PIRNR018300}. R-ATH-113501;R-ATH-174411;R-ATH-174430;R-ATH-68952;R-ATH-68962;R-ATH-69091;R-ATH-69166;R-ATH-69183; Purine metabolism (00230),Pyrimidine metabolism (00240),DNA replication (03030),Metabolic pathways (01100) 69042 DNA polymerase alpha subunit B alpha DNA polymerase:primase complex [GO:0005658]; mitochondrion [GO:0005739]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; protein heterodimerization activity [GO:0046982]; DNA replication initiation [GO:0006270] locus:2008580; AT1G67630 DNA polymerase alpha subunit Os12g0242900 protein (Fragment) Q0IP63 Q0IP63_ORYSJ Os12g0242900 Os12g0242900 OSNPB_120242900 ENOG411DXEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411DXEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Glutathione S-transferase GSTU6, putative, expressed (Os10g0528100 protein) (Putative glutathione S-transferase) (cDNA clone:002-142-E01, full insert sequence),Glutathione S-transferase, N-terminal domain containing protein, expressed (Os10g0527800 protein) (Putative glutathione S-transferase) (Putative glutathione S-transferase OsGSTU12) (cDNA clone:001-121-C09, full insert sequence) Q8S702,Q945W6 Q8S702_ORYSJ,Q945W6_ORYSJ Os10g0528100 LOC_Os10g38470 Os10g0528100 OsJ_32229 OSJNBa0034L04.25 OSNPB_100528100,LOC_Os10g38360 Os10g0527800 OsJ_32227 OSJNBa0034L04.9 OSJNBb0005J14.1 OSNPB_100527800 ENOG411DXEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os06g0339500 protein (Fragment),Os04g0122200 protein C7J414,A0A0N7KIH8 C7J414_ORYSJ,A0A0N7KIH8_ORYSJ Os06g0339500 Os06g0339500 OSNPB_060339500,Os04g0122200 OSNPB_040122200 ENOG411DXED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os02g0208200 protein A0A0P0VG66 A0A0P0VG66_ORYSJ Os02g0208200 OSNPB_020208200 ENOG411DXEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family (UPF0081) NA NA NA NA NA NA NA ENOG411DXEJ Q8LBZ4 OTU_ARATH OTU domain-containing protein At3g57810 35774 OTU domain-containing protein At3g57810 chloroplast [GO:0009507] locus:2095748; AT3G57810 OTU-like cysteine protease NA NA NA NA NA NA NA ENOG411DXEI Q9SR48,F4HTN8 Q9SR48_ARATH,F4HTN8_ARATH F12A21.28 (Remorin family protein) (Uncharacterized protein F12B7.14),Remorin family protein 38783,31007 F12A21.28 (Remorin family protein) (Uncharacterized protein F12B7.14),Remorin family protein nucleus [GO:0005634] locus:2008625; AT1G67590 Remorin C-terminal region NA NA NA NA NA NA NA ENOG411DXEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) E3 ligase (Os06g0125800 protein) (Zinc finger protein-like) (cDNA clone:006-205-F10, full insert sequence) (cDNA clone:J013144A04, full insert sequence) Q9LWV9 Q9LWV9_ORYSJ BBI1 Os06g0125800 OsJ_19955 OSNPB_060125800 P0425F02.32 ENOG411DXEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Harpin-induced protein 1 family (HIN1)-like (Os08g0102700 protein) (cDNA clone:001-039-D12, full insert sequence) (cDNA clone:006-302-B05, full insert sequence) (cDNA clone:006-306-H04, full insert sequence) (cDNA clone:006-311-A05, full insert sequence) (cDNA clone:J013097H23, full insert sequence) (cDNA clone:J013109O20, full insert sequence) (cDNA clone:J013116B02, full insert sequence) Q69U64 Q69U64_ORYSJ Os08g0102700 Os08g0102700 OsJ_25729 OSNPB_080102700 P0015C07.18 ENOG411DXEM CBF5 Q9LD90 CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (CBF5 homolog) (Dyskerin) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (Nucleolar protein NAP57 homolog) No homozygous mutant plants recovered-I. Schubert-2008 FUNCTION: Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity). {ECO:0000250}. ARA:AT3G57150-MONOMER; R-ATH-171319; 5.4.99.- 63026 H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (CBF5 homolog) (Dyskerin) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (Nucleolar protein NAP57 homolog) box H/ACA snoRNP complex [GO:0031429]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; box H/ACA snoRNA 3'-end processing [GO:0000495]; mRNA pseudouridine synthesis [GO:1990481]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120] locus:2080625; AT3G57150 H ACA ribonucleoprotein complex subunit H/ACA ribonucleoprotein complex subunit 4, putative, expressed (Os03g0370500 protein) (Putative centromere/microtubule binding protein) (cDNA clone:001-113-E01, full insert sequence),Os07g0636000 protein (Putative centromere/microtubule binding protein) (cDNA clone:J033094C11, full insert sequence),Os02g0274650 protein,Os04g0576300 protein (Fragment),Os11g0598700 protein (Fragment) Q10KT9,Q8H5T5,B9F4Z0,A0A0P0WDZ0,A0A0P0Y401 Q10KT9_ORYSJ,Q8H5T5_ORYSJ,B9F4Z0_ORYSJ,A0A0P0WDZ0_ORYSJ,A0A0P0Y401_ORYSJ Os03g0370500 LOC_Os03g25450 Os03g0370500 OSJNBa0013M12.22 OSNPB_030370500,OJ1136_D11.103 Os07g0636000 OsJ_25275 OSNPB_070636000,Os02g0274650 OsJ_06224 OSNPB_020274650,Os04g0576300 OSNPB_040576300,Os11g0598700 OSNPB_110598700 ENOG411E1D2 O49712 O49712_ARATH At4g21890 (Uncharacterized protein AT4g21890) (Uncharacterized protein T8O5.100) (Zinc finger MYND domain protein) 29851 At4g21890 (Uncharacterized protein AT4g21890) (Uncharacterized protein T8O5.100) (Zinc finger MYND domain protein) nucleus [GO:0005634] locus:2141647; AT4G21890 NA NA NA NA NA NA NA NA ENOG411E1D0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DAGKa Diacylglycerol kinase (DAG kinase) (EC 2.7.1.107) Q5ZAU2 Q5ZAU2_ORYSJ Os01g0783200 Os01g0783200 B1100D10.35 OSNPB_010783200 ENOG411E1D1 FAX1 Q93V66 FAX1_ARATH Protein FATTY ACID EXPORT 1, chloroplastic (At-FAX1) DISRUPTION PHENOTYPE: Reduced biomass and male sterility. Reduced size, thinner inflorescence stalks and flowers producing short siliques containing almost no seeds. Small vascular bundles with reduced secondary cell walls and modified cuticular wax composition with strongly reduced content in C29-ketone wax components. {ECO:0000269|PubMed:25646734}. FUNCTION: Mediates the export of free fatty acid from the plastids. Potentially prefers palmitic acid (C16:0) over oleic acid (C18:1) and stearic acid (C18:0). Not involved in fatty acid activation. Required for biogenesis of the outer pollen cell wall, in particular for the assembly of exine and pollen coat and for the release of ketone wax components. {ECO:0000269|PubMed:25646734}. MISCELLANEOUS: For all TMEM14 proteins, 4 hydrophobic alpha-helical domains are predicted. However, NMR structure determination of the human TMEM14A showed that only 3 of these helices are membrane-spaning while the amphiphilic N-terminal helix is probably located at the lipid micelle-water interface. {ECO:0000305|PubMed:25646734}. 24347 Protein FATTY ACID EXPORT 1, chloroplastic (At-FAX1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; fatty acid transporter activity [GO:0015245]; fatty acid transmembrane transport [GO:1902001]; fatty acid transport [GO:0015908]; lipid homeostasis [GO:0055088]; plant-type cell wall assembly [GO:0071668]; pollen wall assembly [GO:0010208] DEVELOPMENTAL STAGE: Expressed at all developmental stages, with a peak at early pollen development. {ECO:0000269|PubMed:25646734}. TISSUE SPECIFICITY: Expressed in cotyledons, leaves, sepals and pollen. {ECO:0000269|PubMed:25646734}. locus:2082578; AT3G57280 Transmembrane proteins 14C OSJNBa0089K21.3 protein (Os04g0470300 protein) (cDNA clone:006-202-G01, full insert sequence) (cDNA clone:J023049G07, full insert sequence),Os06g0301100 protein (cDNA, clone: J075150J23, full insert sequence) Q7XQN3,B7F9A6 Q7XQN3_ORYSJ,B7F9A6_ORYSJ Os04g0470300 OsJ_15132 OSJNBa0089K21.3 OSNPB_040470300,Os06g0301100 OsJ_21075 OSNPB_060301100 ENOG411E1D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Natural resistance-associated macrophage protein NA NA NA NA NA NA NA ENOG411E1D4 GSTU18 Q9FUS9 GSTUI_ARATH Glutathione S-transferase U18 (AtGSTU18) (EC 2.5.1.18) (GST class-tau member 18) (Glutathione S-transferase 29) FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}. ARA:AT1G10360-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 25911 Glutathione S-transferase U18 (AtGSTU18) (EC 2.5.1.18) (GST class-tau member 18) (Glutathione S-transferase 29) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; toxin catabolic process [GO:0009407] locus:2012758; AT1G10360 glutathione s-transferase Os01g0692100 protein (cDNA, clone: J100032K22, full insert sequence),Os01g0692000 protein (Fragment) Q8RZY8,A0A0P0V6Z0 Q8RZY8_ORYSJ,A0A0P0V6Z0_ORYSJ Os01g0692100 Os01g0692100 OsJ_03089 OSNPB_010692100 P0034C09.23,Os01g0692000 OSNPB_010692000 ENOG411EBTV Q9SUR0,Q9SUQ9,F4HXW5 Q9SUR0_ARATH,Q9SUQ9_ARATH,F4HXW5_ARATH AT4G23670 protein (AT4g23670/F9D16_140) (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative major latex protein),AT4g23680/F9D16_150 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative major latex protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein 17518,17474,16063 AT4G23670 protein (AT4g23670/F9D16_140) (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative major latex protein),AT4g23680/F9D16_150 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) (Putative major latex protein),Polyketide cyclase/dehydrase and lipid transport superfamily protein vacuole [GO:0005773]; copper ion binding [GO:0005507]; defense response to bacterium [GO:0042742]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651],defense response [GO:0006952]; response to biotic stimulus [GO:0009607] locus:2128439;,locus:2128449; AT4G23670,AT4G23680,AT1G14940 Pathogenesis-related protein Bet v I family NA NA NA NA NA NA NA ENOG411EHQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2QG RPS15AA; RPS15AF,RPS15AD,RPS15AC P42798,Q9LX88,O80646 R15A1_ARATH,R15A4_ARATH,R15A3_ARATH 40S ribosomal protein S15a-1,40S ribosomal protein S15a-4,40S ribosomal protein S15a-3 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 14804,14774,14652 40S ribosomal protein S15a-1,40S ribosomal protein S15a-4,40S ribosomal protein S15a-3 cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2026525;locus:2168118;,locus:2075231; AT1G07770AT5G59850;,AT3G46040,AT2G39590 ribosomal protein S15a Os07g0208000 protein (Ribosomal protein S15) (cDNA clone:001-109-B12, full insert sequence),Os02g0478600 protein (Putative ribosomal protein S15) (cDNA clone:002-175-C06, full insert sequence) Q84ZP1,Q6K5R6 Q84ZP1_ORYSJ,Q6K5R6_ORYSJ OJ1559_F09.109 Os07g0208000 OsJ_23513 OSNPB_070208000,Os02g0478600 Os02g0478600 OsJ_06729 OSNPB_020478600 P0527E02.35 ENOG411E2QD ADF5 Q9ZNT3,F4ILA8,A0A1P8B198 ADF5_ARATH,F4ILA8_ARATH,A0A1P8B198_ARATH Actin-depolymerizing factor 5 (ADF-5) (AtADF5),Actin depolymerizing factor 5 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers. {ECO:0000269|PubMed:11414611}. Regulation of actin cytoskeleton (04810),Fc gamma R-mediated phagocytosis (04666),Axon guidance (04360),Pertussis (05133) 16468,15327,13270 Actin-depolymerizing factor 5 (ADF-5) (AtADF5),Actin depolymerizing factor 5 actin cytoskeleton [GO:0015629]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042],actin cytoskeleton [GO:0015629]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042],actin cytoskeleton [GO:0015629]; integral component of membrane [GO:0016021]; actin binding [GO:0003779]; actin filament depolymerization [GO:0030042] TISSUE SPECIFICITY: Expressed exclusively in root tip meristem. {ECO:0000269|PubMed:11414611}. locus:2059861; AT2G16700 actin-depolymerizing factor Actin-depolymerizing factor 5 (ADF-5) (OsADF5) Q10P87 ADF5_ORYSJ ADF5 Os03g0243100 LOC_Os03g13950 OsJ_10102 FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers (By similarity). {ECO:0000250}. ENOG411E2QE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) Protein G1-like6 Q6K5X1 G1L6_ORYSJ G1L6 Os02g0811000 LOC_Os02g56610 OJ1116_E04.14 OsJ_08822 P0016F11.6 FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. ENOG411E2QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NUDIX domain NA NA NA NA NA NA NA ENOG411E2QH O22910 O22910_ARATH Transmembrane protein (Uncharacterized protein At2g47360) 33966 Transmembrane protein (Uncharacterized protein At2g47360) integral component of membrane [GO:0016021] locus:2065155; AT2G47360 NA NA NA NA NA NA NA NA ENOG411E2QI P0CB26,P0CB27,A0A1P8AV05,A0A1P8AUZ4,F4JEN3 Y1089_ARATH,FB3_ARATH,A0A1P8AV05_ARATH,A0A1P8AUZ4_ARATH,F4JEN3_ARATH Uncharacterized protein At1g10890,F-box protein At1g10895,Arginine/glutamate-rich 1 protein,F-box associated ubiquitination effector family protein 33696,41304,29022,28875,22940 Uncharacterized protein At1g10890,F-box protein At1g10895,Arginine/glutamate-rich 1 protein,F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2088242; AT1G10890,AT1G10895,AT3G14030 NA Os11g0544200 protein (Fragment),Os10g0214400 protein (Fragment) Q0ISA1,Q0IYH3,A0A0P0Y379 Q0ISA1_ORYSJ,Q0IYH3_ORYSJ,A0A0P0Y379_ORYSJ Os11g0544200 OSNPB_110544200,Os10g0214400 Os10g0214400 OSNPB_100214400 ENOG411E2QV Q9LKA1 Q9LKA1_ARATH At3g15040 25550 At3g15040 locus:2086375; AT3G15040 Pfam:DUF584 Os01g0862600 protein (Prolyl 4-hydroxylase alpha subunit-like) (cDNA clone:002-142-B04, full insert sequence) Q5N7G7 Q5N7G7_ORYSJ Os01g0862600 Os01g0862600 OSNPB_010862600 P0423B08.12 ENOG411E2QW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA regulation of cyclin-dependent protein serine/threonine kinase activity Putative cyclin-F2-1 (CycF2;1),Cyclin-F2-2 (CycF2;2),Os02g0600266 protein Q6K1Z6,Q6K8S0,B9FYW2 CCF21_ORYSJ,CCF22_ORYSJ,B9FYW2_ORYSJ CycF2-1 Os02g0607000 LOC_Os02g39420 OsJ_007235 OSJNBa0030C08.9,CYCF2-2 Os02g0605000 LOC_Os02g39260 OJ1058_F07.10 OsJ_007220,Os02g0600266 OsJ_25899 OSNPB_020600266 ENOG411E2QT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: RWP-RK domain-containing protein Os12g0231500 protein A0A0P0Y8J3 A0A0P0Y8J3_ORYSJ Os12g0231500 OSNPB_120231500 ENOG411E2QU Q1H5E3,A0A1I9LP63,Q9M8U2 Q1H5E3_ARATH,A0A1I9LP63_ARATH,Q9M8U2_ARATH At5g16870 (Peptidyl-tRNA hydrolase II (PTH2) family protein),Peptidyl-tRNA hydrolase II (PTH2) family protein,AT3G03010 protein (F13E7.4 protein) (Peptidyl-tRNA hydrolase II (PTH2) family protein) ARA:AT3G03010-MONOMER; 18507,16904,19852 At5g16870 (Peptidyl-tRNA hydrolase II (PTH2) family protein),Peptidyl-tRNA hydrolase II (PTH2) family protein,AT3G03010 protein (F13E7.4 protein) (Peptidyl-tRNA hydrolase II (PTH2) family protein) aminoacyl-tRNA hydrolase activity [GO:0004045] locus:2148111;,locus:2075537; AT5G16870,AT3G03010 peptidyl-tRNA hydrolase OSJNBa0060D06.11 protein (Os04g0652900 protein) (cDNA clone:J023082K03, full insert sequence) Q7XPN3 Q7XPN3_ORYSJ Os04g0652900 Os04g0652900 OSJNBa0060D06.11 OSNPB_040652900 ENOG411E2QR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0830300 protein A0A0P0VRS2 A0A0P0VRS2_ORYSJ Os02g0830300 OSNPB_020830300 ENOG411E2QS Q8VYF2,A0A1P8B3W0 Q8VYF2_ARATH,A0A1P8B3W0_ARATH Uncharacterized protein At4g15790 (Uveal autoantigen with coiled-coil/ankyrin),Uveal autoantigen with coiled-coil/ankyrin 16530,20213 Uncharacterized protein At4g15790 (Uveal autoantigen with coiled-coil/ankyrin),Uveal autoantigen with coiled-coil/ankyrin locus:2130719; AT4G15790 NA Expressed protein (Os12g0541400 protein) (cDNA clone:006-208-B06, full insert sequence) Q2QP55 Q2QP55_ORYSJ Os12g0541400 LOC_Os12g35620 OSNPB_120541400 ENOG411E2QP emb1513 Q8LG21 Q8LG21_ARATH Copper ion transmembrane transporter Embryo defective; Transition-D. Meinke-2002 28217 Copper ion transmembrane transporter integral component of membrane [GO:0016021] locus:2065664; AT2G37920 Inherit from KOG: atp-dependent rna helicase NA NA NA NA NA NA NA ENOG411E2QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic translation initiation factor 2B family protein Eukaryotic translation initiation factor 2B family protein, putative, expressed (Os11g0120300 protein) (cDNA, clone: J065167I06, full insert sequence),Eukaryotic translation initiation factor 2B family protein, putative, expressed (Os12g0120100 protein) (cDNA clone:J033044A06, full insert sequence) Q2RB95,Q2QYG9 Q2RB95_ORYSJ,Q2QYG9_ORYSJ Os11g0120300 LOC_Os11g02750 OSNPB_110120300,Os12g0120100 LOC_Os12g02720 Os12g0120100 OSNPB_120120100 ENOG411E2QY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UBX domain protein Os02g0640700 protein (UBX domain-containing protein-like) Q6H7D0 Q6H7D0_ORYSJ Os02g0640700 OSNPB_020640700 P0010C01.42 ENOG411E2Q6 RD2 Q9SIJ8,Q94II5 Q9SIJ8_ARATH,Q94II5_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (Expressed protein) (RD2 protein),Adenine nucleotide alpha hydrolases-like superfamily protein (RD2 protein) 20588,21253 Adenine nucleotide alpha hydrolases-like superfamily protein (Expressed protein) (RD2 protein),Adenine nucleotide alpha hydrolases-like superfamily protein (RD2 protein) hydrolase activity [GO:0016787]; response to stress [GO:0006950],plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2049334; AT2G21620 Universal stress protein family Os02g0705400 protein (Putative pathogen induced protein 2-4) (cDNA clone:J023078F08, full insert sequence),Os02g0705400 protein Q6Z2G8,A0A0P0VNU8 Q6Z2G8_ORYSJ,A0A0P0VNU8_ORYSJ P0680A05.8-1 Os02g0705400 OSNPB_020705400,Os02g0705400 OSNPB_020705400 ENOG411E2Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Os06g0227500 protein A0A0P0WU82 A0A0P0WU82_ORYSJ Os06g0227500 OSNPB_060227500 ENOG411E2Q4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Pre-mRNA-splicing factor ATP-dependent RNA helicase F-box domain containing protein-like (Os07g0530400 protein) (cDNA clone:002-125-H09, full insert sequence),Os07g0578125 protein (Fragment),Os07g0577750 protein,Os03g0792300 protein Q7XHY2,A0A0P0X824,A0A0N7KNQ9,A0A0P0W419 Q7XHY2_ORYSJ,A0A0P0X824_ORYSJ,A0A0N7KNQ9_ORYSJ,A0A0P0W419_ORYSJ P0681F05.115 Os07g0530400 OSNPB_070530400,Os07g0578125 OSNPB_070578125,Os07g0577750 OSNPB_070577750,Os03g0792300 OSNPB_030792300 ENOG411E2Q2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os08g0102551 protein A0A0P0XBA0 A0A0P0XBA0_ORYSJ Os08g0102551 OSNPB_080102551 ENOG411E2Q3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LA NA NA NA NA NA NA NA ENOG411E2Q0 Q6NQC3,A0A1I9LLY3 Q6NQC3_ARATH,A0A1I9LLY3_ARATH At3g48120 (Serine/arginine-rich splicing factor) (Uncharacterized protein At3g48120),Serine/arginine-rich splicing factor 37836,30286 At3g48120 (Serine/arginine-rich splicing factor) (Uncharacterized protein At3g48120),Serine/arginine-rich splicing factor alternative mRNA splicing, via spliceosome [GO:0000380] locus:2097900; AT3G48120 NA Os01g0687600 protein (cDNA clone:002-101-F12, full insert sequence) Q5N7L4 Q5N7L4_ORYSJ Os01g0687600 Os01g0687600 OSNPB_010687600 P0519D04.23 ENOG411E2Q1 ARPC5B,ARPC5A B3H6Y2,Q9M117 ARC5B_ARATH,ARC5A_ARATH Actin-related protein 2/3 complex subunit 5B (Actin-related protein C5B) (Arp2/3 complex 16 kDa subunit) (p16-ARC),Actin-related protein 2/3 complex subunit 5A (Actin-related protein C5A) (Arp2/3 complex 16 kDa subunit) (p16-ARC) (Protein CROOKED) DISRUPTION PHENOTYPE: Distorted trichomes and altered epidermal cell types. {ECO:0000269|PubMed:12783786, ECO:0000269|PubMed:12913159}. FUNCTION: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. {ECO:0000250}.,FUNCTION: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (By similarity). Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. {ECO:0000250, ECO:0000269|PubMed:12783786, ECO:0000269|PubMed:12913159}. 15065,14972 Actin-related protein 2/3 complex subunit 5B (Actin-related protein C5B) (Arp2/3 complex 16 kDa subunit) (p16-ARC),Actin-related protein 2/3 complex subunit 5A (Actin-related protein C5A) (Arp2/3 complex 16 kDa subunit) (p16-ARC) (Protein CROOKED) Arp2/3 protein complex [GO:0005885]; cell projection [GO:0042995]; cytoplasm [GO:0005737]; actin filament binding [GO:0051015]; Arp2/3 complex-mediated actin nucleation [GO:0034314],Arp2/3 protein complex [GO:0005885]; cell projection [GO:0042995]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; actin filament binding [GO:0051015]; actin cytoskeleton organization [GO:0030036]; actin filament organization [GO:0007015]; actin filament polymerization [GO:0030041]; Arp2/3 complex-mediated actin nucleation [GO:0034314]; multidimensional cell growth [GO:0009825]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed at low levels in all tissues with a relatively highest expression in inflorescences. {ECO:0000269|PubMed:12783786, ECO:0000269|PubMed:12913159}. locus:4515103762;,locus:2133422; AT5G65274,AT4G01710 Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (By similarity) Actin-related protein 2/3 complex subunit 5 Q2R2M0 Q2R2M0_ORYSJ Os11g0557900 LOC_Os11g35360 Os11g0557900 OSNPB_110557900 FUNCTION: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. {ECO:0000256|RuleBase:RU004301}. ENOG411EH90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EH93 LCR81 Q9SL74,P82790 DEF78_ARATH,DEF80_ARATH Defensin-like protein 78,Putative defensin-like protein 80 (Putative low-molecular-weight cysteine-rich protein 81) (Protein LCR81) 9312,8491 Defensin-like protein 78,Putative defensin-like protein 80 (Putative low-molecular-weight cysteine-rich protein 81) (Protein LCR81) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:2061644;,locus:1009023156; AT2G20070,AT2G25295 low-molecular-weight cysteine-rich 81 NA NA NA NA NA NA NA ENOG411EH94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EH95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH96 P92544 M1130_ARATH Uncharacterized mitochondrial protein AtMg01130 (ORF106f) 11758 Uncharacterized mitochondrial protein AtMg01130 (ORF106f) mitochondrion [GO:0005739] locus:504954596; ATMG01130 NA NA NA NA NA NA NA NA ENOG411EH97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH98 Q1LYU7,Q9SAG1,F4HVT8 Q1LYU7_ARATH,Q9SAG1_ARATH,F4HVT8_ARATH At1g80970 (XH domain-containing protein),F23A5.35 (XH domain-containing protein),XH domain-containing protein 24767,26376,30417 At1g80970 (XH domain-containing protein),F23A5.35 (XH domain-containing protein),XH domain-containing protein locus:2025722;,locus:2025717; AT1G80970,AT1G80990 XH domain-containing protein NA NA NA NA NA NA NA ENOG411EH99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411EH9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger NA NA NA NA NA NA NA ENOG411EH9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0446401 protein A0A0P0WAV5 A0A0P0WAV5_ORYSJ Os04g0446401 OSNPB_040446401 ENOG411EH9S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0515100 protein (cDNA clone:002-113-E03, full insert sequence),Os02g0153300 protein,Os02g0155300 protein,Os02g0156300 protein Q0E0X1,C7IY49,Q0E3T6,Q6ET61 Q0E0X1_ORYSJ,C7IY49_ORYSJ,Q0E3T6_ORYSJ,Q6ET61_ORYSJ Os02g0515100 Os02g0515100 OsJ_06903 OSNPB_020515100,Os02g0153300 Os02g0153300 OSNPB_020153300,Os02g0155300 Os02g0155300 OSNPB_020155300,Os02g0156300 OsJ_05434 OSNPB_020156300 P0419H03.6 ENOG411EH9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9V M10,M17 O81483,Q9S7S3 M10_ARATH,M17_ARATH Late embryogenesis abundant protein M10 (AtM10),Late embryogenesis abundant protein M17 (AtM17) FUNCTION: May be involved in the acquisition of desiccation tolerance during late phase of embryogenesis. {ECO:0000305|PubMed:10394954}. 11432,29559 Late embryogenesis abundant protein M10 (AtM10),Late embryogenesis abundant protein M17 (AtM17) endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; vacuole [GO:0005773]; seed dormancy process [GO:0010162],vacuole [GO:0005773]; embryo development ending in seed dormancy [GO:0009793] DEVELOPMENTAL STAGE: Expressed exclusively in seeds from late embryogenesis until 1 day after imbibition. {ECO:0000269|PubMed:10394954}. locus:2040322;,locus:2040252; AT2G41280,AT2G41260 NA NA NA NA NA NA NA NA ENOG411EH9W Q8L923 Q8L923_ARATH At3g14395 8352 At3g14395 locus:505006346; AT3G14395 NA NA NA NA NA NA NA NA ENOG411EH9X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) Os01g0213300 protein Q94IZ9 Q94IZ9_ORYSJ Os01g0213300 OsJ_15707 OSJNBa0038J17.14 OSNPB_010213300 ENOG411EH9A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9B Q1G396 Q1G396_ARATH Uncharacterized protein 11078 Uncharacterized protein locus:4515103251; AT3G52561 NA NA NA NA NA NA NA NA ENOG411EH9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9D T9C5.130 Q9SCK5 Q9SCK5_ARATH At3g49540 (Uncharacterized protein At3g49540) (Uncharacterized protein T9C5.130) 17373 At3g49540 (Uncharacterized protein At3g49540) (Uncharacterized protein T9C5.130) locus:2114693; AT3G49540 NA NA NA NA NA NA NA NA ENOG411EH9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9G CYS4 Q84WT8 CYT4_ARATH Cysteine proteinase inhibitor 4 (AtCYS-4) FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. 12556 Cysteine proteinase inhibitor 4 (AtCYS-4) cell wall [GO:0005618]; cytosol [GO:0005829]; extracellular region [GO:0005576]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; protease binding [GO:0002020]; defense response [GO:0006952]; negative regulation of cysteine-type endopeptidase activity [GO:2000117] locus:2130709; AT4G16500 cysteine protease inhibitor family protein cystatin family protein NA NA NA NA NA NA NA ENOG411EH9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411EH9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EH9K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0093O08.7 protein (Os04g0616900 protein) (cDNA clone:001-046-G10, full insert sequence) Q7XTP0 Q7XTP0_ORYSJ Os04g0616900 Os04g0616900 OsJ_16170 OSJNBa0093O08.7 OSNPB_040616900 ENOG411EH9M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin NA NA NA NA NA NA NA ENOG411EH9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411EJWF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Coiled-coil domain containing protein (DUF2052) NA NA NA NA NA NA NA ENOG411EDKZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator-like PRR73 (Pseudo-response regulator 73) (OsPRR73),Os03g0284100 protein (Two-component response regulator-like PRR73, putative, expressed) Q10N34,Q10N33 PRR73_ORYSJ,Q10N33_ORYSJ PRR73 Os03g0284100 LOC_Os03g17570,Os03g0284100 LOC_Os03g17570 OSNPB_030284100 FUNCTION: Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock (By similarity). {ECO:0000250}. ENOG411EKF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger Os03g0716200 protein (PHD-finger family protein, expressed) (Putative collagen) Q8W342 Q8W342_ORYSJ Os03g0716200 LOC_Os03g50780 OSJNBa0014G15.5 OSNPB_030716200 ENOG411EJWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PINT NA NA NA NA NA NA NA ENOG411EKFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response regulator Two-component response regulator ORR21 (OsRRB1),Os03g0224200 protein (Fragment) Q8H7S7,A0A0P0VUW6 ORR21_ORYSJ,A0A0P0VUW6_ORYSJ RR21 ORR1 Os03g0224200 LOC_Os03g12350 OsJ_09978 OSJNBa0081P02.4,Os03g0224200 OSNPB_030224200 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, lesion mimic, low tillering and late heading phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. ENOG411EKFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0068L06.9 protein (Os04g0102600 protein) (cDNA clone:006-205-A03, full insert sequence) (cDNA clone:J023072A16, full insert sequence) Q7XTB4 Q7XTB4_ORYSJ Os04g0102600 OsJ_13497 OSJNBa0068L06.9 OSNPB_040102600 ENOG411EKFU ARR4 O82798,A0A1P8ASI6,A0A1P8ASD9 ARR4_ARATH,A0A1P8ASI6_ARATH,A0A1P8ASD9_ARATH Two-component response regulator ARR4 (Response regulator 1),Response regulator 4 lengthens the period of the clock in all conditions Slightly longer petioles under short days; Short hypocotyl under red light-J. Kieber-2004 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. Modulates red light signaling through its interaction with the phytochrome B photoreceptor. {ECO:0000269|PubMed:11691995, ECO:0000269|PubMed:14973166, ECO:0000269|PubMed:9482949}. 28297,20190,26778 Two-component response regulator ARR4 (Response regulator 1),Response regulator 4 cytoplasm [GO:0005737]; nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; protein serine/threonine kinase activity [GO:0004674]; circadian rhythm [GO:0007623]; cytokinin-activated signaling pathway [GO:0009736]; embryo development ending in seed dormancy [GO:0009793]; protein autophosphorylation [GO:0046777]; red or far-red light signaling pathway [GO:0010017]; regulation of transcription, DNA-templated [GO:0006355]; response to cytokinin [GO:0009735]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay signal transduction system [GO:0000160] TISSUE SPECIFICITY: Predominantly expressed in roots, and stems of young inflorescences. {ECO:0000269|PubMed:9482949, ECO:0000269|PubMed:9607306, ECO:0000269|PubMed:9634588}. locus:2194584; AT1G10470 AT1G10470 (E 2e-090) ARR4 MEE7 ATRR1 IBC7 ARR4 (RESPONSE REGULATOR 4) NA NA NA NA NA NA NA ENOG411EMAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EFCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 2B1 (OsCASPL2B1),CASP-like protein Q0IN16,A0A0P0YAP9 CSPLE_ORYSJ,A0A0P0YAP9_ORYSJ Os12g0514300 LOC_Os12g32970,Os12g0514300 OSNPB_120514300 ENOG411EAE4 SYP122 Q9SVC2 SY122_ARATH Syntaxin-122 (AtSYP122) (Synt4) FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-449836; 37837 Syntaxin-122 (AtSYP122) (Synt4) endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; defense response to fungus [GO:0050832]; exocytosis [GO:0006887]; protein targeting to membrane [GO:0006612]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] locus:2079894; AT3G52400 SynN NA NA NA NA NA NA NA ENOG411EAEA Q9LN16,A0A1P8AT79 Q9LN16_ARATH,A0A1P8AT79_ARATH At1g17310 (MADS-box protein) (MADS-box protein AGL100) (MADS-box transcription factor family protein) (T13M22.2 protein) (Uncharacterized protein At1g17310),MADS-box transcription factor family protein 24920,26151 At1g17310 (MADS-box protein) (MADS-box protein AGL100) (MADS-box transcription factor family protein) (T13M22.2 protein) (Uncharacterized protein At1g17310),MADS-box transcription factor family protein nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2195798; AT1G17310 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EAEB AGL94 Q766C0,A0A1P8ASZ9,A0A1P8ASZ2 Q766C0_ARATH,A0A1P8ASZ9_ARATH,A0A1P8ASZ2_ARATH AGAMOUS-like 94 (MADS-box protein),AGAMOUS-like 94 39221,41996,28623 AGAMOUS-like 94 (MADS-box protein),AGAMOUS-like 94 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2007186; AT1G69540 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EAEN Q9C7V7 Q9C7V7_ARATH At1g64330 (Myosin heavy chain-like protein) (Uncharacterized protein At1g64330) (Uncharacterized protein F15H21.4) 64494 At1g64330 (Myosin heavy chain-like protein) (Uncharacterized protein At1g64330) (Uncharacterized protein F15H21.4) vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; actin binding [GO:0003779] locus:2014240; AT1G64330 Inherit from NOG: laminin beta NA NA NA NA NA NA NA ENOG411EAEP Q9SZW7 GDL68_ARATH GDSL esterase/lipase At4g30140 (EC 3.1.1.-) (Extracellular lipase At4g30140) ARA:AT4G30140-MONOMER; 3.1.1.74; 3.1.1.- 37471 GDSL esterase/lipase At4g30140 (EC 3.1.1.-) (Extracellular lipase At4g30140) extracellular space [GO:0005615]; pollen tube [GO:0090406]; cutinase activity [GO:0050525]; lipid catabolic process [GO:0016042] locus:2126520; AT4G30140 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411EAES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAER Q9ZUA2 PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740 62491 Pentatricopeptide repeat-containing protein At2g01740 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2065428; AT2G01740 repeat-containing protein NA NA NA NA NA NA NA ENOG411EAET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0249700 protein Q6K503 Q6K503_ORYSJ Os02g0249700 OJ1113_G05.1 OsJ_06083 OSJNBa0011N12.31 OSNPB_020249700 ENOG411EAEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EAEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EFCR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily NA NA NA NA NA NA NA ENOG411EF7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF7S HIPP34 Q0WV37,Q3E7M7 HIP34_ARATH,Q3E7M7_ARATH Heavy metal-associated isoprenylated plant protein 34 (AtHIP34),Heavy metal transport/detoxification superfamily protein FUNCTION: Heavy-metal-binding protein. {ECO:0000250|UniProtKB:Q9LZF1}. 58882,48543 Heavy metal-associated isoprenylated plant protein 34 (AtHIP34),Heavy metal transport/detoxification superfamily protein cytoplasm [GO:0005737]; plasmodesma [GO:0009506]; transition metal ion binding [GO:0046914]; cellular transition metal ion homeostasis [GO:0046916]; metal ion transport [GO:0030001] locus:2096204; AT3G05220 Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EF7Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative ripening-related protein 7 Q7XD65 RIP7_ORYSJ Os10g0489400 LOC_Os10g34770 B1288B10.5 OSJNBb0049A16.7 ENOG411EF7Z T16K5.170 Q9M2X6 Q9M2X6_ARATH Uncharacterized protein T16K5.170 17831 Uncharacterized protein T16K5.170 locus:2097405; AT3G49820 NA NA NA NA NA NA NA NA ENOG411EF7D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os01g0823550 protein A0A0P0V9Y5 A0A0P0V9Y5_ORYSJ Os01g0823550 OSNPB_010823550 ENOG411EF7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PsbP NA NA NA NA NA NA NA ENOG411EF7G GRXC14,GRXC13 Q9LYC5,O82255 GRC14_ARATH,GRC13_ARATH Glutaredoxin-C14 (AtGrxC14) (Protein ROXY 8),Glutaredoxin-C13 (AtGrxC13) (Protein ROXY 9) FUNCTION: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity). {ECO:0000250}. 11283,11275 Glutaredoxin-C14 (AtGrxC14) (Protein ROXY 8),Glutaredoxin-C13 (AtGrxC13) (Protein ROXY 9) cytoplasm [GO:0005737]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2099197;,locus:2043423; AT3G62960,AT2G47880 Glutaredoxin NA NA NA NA NA NA NA ENOG411EF7B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of Vps4 activity in the MVB pathway NA NA NA NA NA NA NA ENOG411EF75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger A20 and AN1 domain-containing stress-associated protein Zinc finger AN1 domain-containing stress-associated protein 14 (OsSAP14),Zinc finger A20 and AN1 domain-containing stress-associated protein 7 (OsSAP7) Q852K8,Q852K6 SAP14_ORYSJ,SAP7_ORYSJ SAP14 Os03g0793300 LOC_Os03g57920 OsJ_12921 OSJNBb0060J21.14,SAP7 ZFP48 Os03g0793000 LOC_Os03g57900 OsJ_12914 OSJNBb0060J21.16 FUNCTION: May be involved in environmental stress response. {ECO:0000250}. ENOG411EF77 AGL96 Q9FG20 Q9FG20_ARATH AGAMOUS-like 96 (MADS-box family protein) (Similarity to MADS-box transcription factor) 27298 AGAMOUS-like 96 (MADS-box family protein) (Similarity to MADS-box transcription factor) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2144098; AT5G06500 SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EF70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411EF71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EF73 Q9SY35,Q9SY37,Q9LFJ4,Q9LFJ2,Q9LFJ1,F4KFM6,F4J8G8 Q9SY35_ARATH,Q9SY37_ARATH,Q9LFJ4_ARATH,Q9LFJ2_ARATH,Q9LFJ1_ARATH,F4KFM6_ARATH,F4J8G8_ARATH Cystatin/monellin superfamily protein (Uncharacterized protein AT4g03570) (Uncharacterized protein T5L23.6),Cystatin/monellin superfamily protein (Uncharacterized protein AT4g03590) (Uncharacterized protein T5L23.8),Cystatin/monellin superfamily protein (Uncharacterized protein F2K13_240),Cystatin/monellin superfamily protein (Uncharacterized protein F2K13_260),Cystatin/monellin superfamily protein (Uncharacterized protein F2K13_270),Cystatin/monellin superfamily protein 39966,28514,25825,23809,24027,23395,21413 Cystatin/monellin superfamily protein (Uncharacterized protein AT4g03570) (Uncharacterized protein T5L23.6),Cystatin/monellin superfamily protein (Uncharacterized protein AT4g03590) (Uncharacterized protein T5L23.8),Cystatin/monellin superfamily protein (Uncharacterized protein F2K13_240),Cystatin/monellin superfamily protein (Uncharacterized protein F2K13_260),Cystatin/monellin superfamily protein (Uncharacterized protein F2K13_270),Cystatin/monellin superfamily protein locus:2140655;,locus:2140670;,locus:2148196;,locus:2148226;,locus:2148236;,locus:2148156;,locus:504955884; AT4G03570,AT4G03590,AT5G17090,AT5G17110,AT5G17120,AT5G17150,AT3G05685 NA NA NA NA NA NA NA NA ENOG411EF78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0696450 protein (Fragment) A0A0N7KMN2 A0A0N7KMN2_ORYSJ Os06g0696450 OSNPB_060696450 ENOG411EF79 Q3ECR8,Q3E9U9 Q3ECR8_ARATH,Q3E9U9_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Expressed protein 13425,8672 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein,Expressed protein membrane [GO:0016020]; lipid transport [GO:0006869] locus:504956292;,locus:1006230317; AT1G52415,AT4G28405 NA NA NA NA NA NA NA NA ENOG411EBYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain Os11g0247300 protein (Fragment) A0A0N7KSP9 A0A0N7KSP9_ORYSJ Os11g0247300 OSNPB_110247300 ENOG411EDKN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GatB domain NA NA NA NA NA NA NA ENOG411EI49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI42 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI40 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0333800 protein A0A0P0XEG1 A0A0P0XEG1_ORYSJ Os08g0333800 OSNPB_080333800 ENOG411EI46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-ala D-ala ligase C-terminus NA NA NA NA NA NA NA ENOG411EI47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-directed RNA polymerase III subunit Rpc31 NA NA NA NA NA NA NA ENOG411EI44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Cw-hydrolase NA NA NA NA NA NA NA ENOG411EDKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EHG9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EDKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDKB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1668) NA NA NA NA NA NA NA ENOG411EDKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcineurin b-like protein NA NA NA NA NA NA NA ENOG411EI4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411EI4Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EI4U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0687850 protein (Fragment),Os02g0124650 protein (Fragment) A0A0P0V6Q5,A0A0P0VEA7 A0A0P0V6Q5_ORYSJ,A0A0P0VEA7_ORYSJ Os01g0687850 OSNPB_010687850,Os02g0124650 OSNPB_020124650 ENOG411EI4J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Response regulator receiver domain NA NA NA NA NA NA NA ENOG411EI4K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:COX5C NA NA NA NA NA NA NA ENOG411EI4I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0352700 protein A0A0P0VXE8 A0A0P0VXE8_ORYSJ Os03g0352700 OSNPB_030352700 ENOG411EI4M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein Q8HCM4 Q8HCM4_ORYSJ orf162 ENOG411EI4B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0646800 protein A0A0P0V5W1 A0A0P0V5W1_ORYSJ Os01g0646800 OSNPB_010646800 ENOG411EI4F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0176300 protein A0A0P0Y7N3 A0A0P0Y7N3_ORYSJ Os12g0176300 OSNPB_120176300 ENOG411EI4G MKP11.3 Q9FFJ1 Q9FFJ1_ARATH At5g17180 14381 At5g17180 locus:2167160; AT5G17180 NA NA NA NA NA NA NA NA ENOG411EI4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EI4E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDKT F4P12_260 Q9LFG3,Q8L606 Q9LFG3_ARATH,Q8L606_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein F4P12_260),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At3g53560) 44001,38665 Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein F4P12_260),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein At3g53560) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536] locus:2084001; AT3G53560 chloroplast lumen common family protein NA NA NA NA NA NA NA ENOG411EDKU ABCG43,ABCG42 Q7PC81,Q7PC82,A0A1P8B7P4,A0A1P8B7N9,A0A1P8B7Q6,A0A1P8B7P5 AB43G_ARATH,AB42G_ARATH,A0A1P8B7P4_ARATH,A0A1P8B7N9_ARATH,A0A1P8B7Q6_ARATH,A0A1P8B7P5_ARATH ABC transporter G family member 43 (ABC transporter ABCG.43) (AtABCG43) (Pleiotropic drug resistance protein 15),ABC transporter G family member 42 (ABC transporter ABCG.42) (AtABCG42) (Pleiotropic drug resistance protein 14),ABC-2 and Plant PDR ABC-type transporter family protein FUNCTION: May be a general defense protein. {ECO:0000250}. 157643,158222,151021,141995,156288,157243 ABC transporter G family member 43 (ABC transporter ABCG.43) (AtABCG43) (Pleiotropic drug resistance protein 15),ABC transporter G family member 42 (ABC transporter ABCG.42) (AtABCG42) (Pleiotropic drug resistance protein 14),ABC-2 and Plant PDR ABC-type transporter family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transport [GO:0006810] TISSUE SPECIFICITY: Confined to shoots. {ECO:0000269|PubMed:12430018}. locus:504955417; AT4G15236,AT4G15233 May be a general defense protein (By similarity) NA NA NA NA NA NA NA ENOG411EDKR RGP4 Q9LUE6 RGP4_ARATH Probable UDP-arabinopyranose mutase 4 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 4) (AtRGP4) (UDP-L-arabinose mutase 4) FUNCTION: Probable UDP-L-arabinose mutase involved in the biosynthesis of cell wall non-cellulosic polysaccharides. {ECO:0000250|UniProtKB:Q9SRT9}. ARA:AT5G50750-MONOMER; 5.4.99.30 41866 Probable UDP-arabinopyranose mutase 4 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 4) (AtRGP4) (UDP-L-arabinose mutase 4) cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; intramolecular transferase activity [GO:0016866]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type cell wall biogenesis [GO:0009832]; UDP-L-arabinose metabolic process [GO:0033356] TISSUE SPECIFICITY: Specifically expressed in developing seeds. {ECO:0000269|PubMed:21478444}. locus:2163305; AT5G50750 reversibly glycosylated polypeptide 4 NA NA NA NA NA NA NA ENOG411DV8F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chitinase NA NA NA NA NA NA NA ENOG411DV8G EMB1025 O49436 PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 (Protein EMBRYO DEFECTIVE 1025) Embryos consistently initiated cotyledons and continued growth and cell division beyond heart stage. Embryos develop slowly to a morphology resembling younger narrow somewhat pointed torpedo stage embryos with slightly stunted cotyledons. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: May play a role in embryogenesis. {ECO:0000269|PubMed:15647901}. 74124 Pentatricopeptide repeat-containing protein At4g20090 (Protein EMBRYO DEFECTIVE 1025) mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; embryo development ending in seed dormancy [GO:0009793]; mitochondrial translation [GO:0032543]; RNA modification [GO:0009451] locus:2119747; AT4G20090 Pentatricopeptide repeat-containing protein Os06g0499301 protein (Putative fertility restorer) Q656A1 Q656A1_ORYSJ Os06g0499301 OsJ_21452 OSNPB_060499301 P0596H06.19 ENOG411DV8D FAR3,FAR2,CER4 Q93ZB9,Q08891,A0A1P8B726 FACR3_ARATH,FACR2_ARATH,A0A1P8B726_ARATH Fatty acyl-CoA reductase 3 (EC 1.2.1.84) (Protein ECERIFERUM 4),Fatty acyl-CoA reductase 2 (EC 1.2.1.84) (Fatty acid reductase 2) (Male sterility protein 2),Fatty acyl-CoA reductase (EC 1.2.1.84) DISRUPTION PHENOTYPE: Glossy stem wax. Major decreases in primary alcohols and wax esters, and slightly elevated levels of aldehydes, alkanes, secondary alcohols, and ketones. {ECO:0000269|PubMed:12228482, ECO:0000269|PubMed:16980563, ECO:0000269|PubMed:18470011}.,DISRUPTION PHENOTYPE: Male sterility. {ECO:0000269|PubMed:8390620, ECO:0000269|PubMed:9351246}. Glossy stems and inflorescences-L. Kunst-2006,Male sterile-A. Pereira-1993 FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C24:0 and C26:0. May be unable to use saturated and monounsaturated C16 and C18 acyl-CoA as substrates. Involved in cuticular wax formation. {ECO:0000269|PubMed:16980563, ECO:0000269|PubMed:19062129}.,FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Involved in the synthesis of the lipid component in sporopollenin. {ECO:0000269|PubMed:19062129, ECO:0000269|PubMed:9351246}.,FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. {ECO:0000256|RuleBase:RU363097}. MetaCyc:AT4G33790-MONOMER;,ARA:AT3G11980-MONOMER;MetaCyc:AT3G11980-MONOMER; R-ATH-8848584; 1.2.1.50;1.2.1.84;,1.2.1.42;1.2.1.50; 1.2.1.84 56035,68416,43368 Fatty acyl-CoA reductase 3 (EC 1.2.1.84) (Protein ECERIFERUM 4),Fatty acyl-CoA reductase 2 (EC 1.2.1.84) (Fatty acid reductase 2) (Male sterility protein 2),Fatty acyl-CoA reductase (EC 1.2.1.84) endoplasmic reticulum [GO:0005783]; fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; lipid metabolic process [GO:0006629]; long-chain fatty-acyl-CoA metabolic process [GO:0035336]; suberin biosynthetic process [GO:0010345]; wax biosynthetic process [GO:0010025],intracellular membrane-bounded organelle [GO:0043231]; fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [GO:0016628]; lipid metabolic process [GO:0006629]; long-chain fatty-acyl-CoA metabolic process [GO:0035336]; pollen exine formation [GO:0010584]; suberin biosynthetic process [GO:0010345],fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; lipid metabolic process [GO:0006629] DEVELOPMENTAL STAGE: Expressed during microsporogenesis when microspores are released from tetrads. {ECO:0000269|PubMed:9351246}. TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, siliques and roots. Detected in epidermal cells of leaves and stems, in trichomes and in the elongation zone of young roots. {ECO:0000269|PubMed:16980563}.,TISSUE SPECIFICITY: Expressed in tapetum. {ECO:0000269|PubMed:9351246}. locus:2134278;,locus:2088664; AT4G33790,AT3G11980 fatty acyl-CoA reductase Fatty acyl-CoA reductase (EC 1.2.1.84) Q8S7T9,B7F9S3 Q8S7T9_ORYSJ,B7F9S3_ORYSJ OSJNBa0091P11.14 LOC_Os03g07140 Os03g0167600 OSNPB_030167600,Os08g0298700 OsJ_26806 OSNPB_080298700 FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. {ECO:0000256|RuleBase:RU363097}. ENOG411DV8E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA replication factor C Replication factor C subunit 1 (OsRFC1) (Activator 1 large subunit) (Activator 1 subunit 1) Q2R2B4 RFC1_ORYSJ RFC1 Os11g0572100 LOC_Os11g36390 FUNCTION: May be involved in DNA replication and thus regulate cell proliferation. {ECO:0000250}. ENOG411DV8B ACR12 Q9LZ23,F4JXP5 ACR12_ARATH,F4JXP5_ARATH ACT domain-containing protein ACR12 (Protein ACT DOMAIN REPEATS 12),ACT domain-containing protein FUNCTION: May be involved in feedback regulation of amino acid metabolism. {ECO:0000303|PubMed:21861936}. 33242,22006 ACT domain-containing protein ACR12 (Protein ACT DOMAIN REPEATS 12),ACT domain-containing protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535] locus:2175458; AT5G04740 ACT domain-containing protein ACT domain-containing protein, putative, expressed (Os12g0152700 protein) (cDNA clone:J013024D11, full insert sequence),Os12g0152700 protein (Fragment) Q2QXL3,A0A0P0Y723 Q2QXL3_ORYSJ,A0A0P0Y723_ORYSJ Os12g0152700 LOC_Os12g05650 Os12g0152700 OsJ_35248 OSNPB_120152700,Os12g0152700 OSNPB_120152700 ENOG411DV8C SWI3A Q8W475,A0A1P8B194 SWI3A_ARATH,A0A1P8B194_ARATH SWI/SNF complex subunit SWI3A (AtSWI3A) (Transcription regulatory protein SWI3A),SWITCH/sucrose nonfermenting 3A DISRUPTION PHENOTYPE: Plants have an embryo development blocked at the early globular stage. {ECO:0000269|PubMed:16055636}. Embryo defective; Gametophyte defective-A. Jermanowski; D. Meinke-2007 FUNCTION: Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}. 57485,45615 SWI/SNF complex subunit SWI3A (AtSWI3A) (Transcription regulatory protein SWI3A),SWITCH/sucrose nonfermenting 3A SWI/SNF complex [GO:0016514]; DNA binding [GO:0003677]; chromatin remodeling [GO:0006338]; covalent chromatin modification [GO:0016569]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers, but not in siliques. {ECO:0000269|PubMed:14682613}. locus:2043263; AT2G47620 SWI SNF complex subunit Os04g0480300 protein (cDNA clone:J033093P09, full insert sequence) Q0JCC3 Q0JCC3_ORYSJ Os04g0480300 Os04g0480300 OSNPB_040480300 ENOG411DV8A HAT,DAYSLEEPER Q9M2N5,A0A1I9LLZ3 DSLE_ARATH,A0A1I9LLZ3_ARATH Zinc finger BED domain-containing protein DAYSLEEPER (Transposase-like protein DAYSLEEPER),BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER DISRUPTION PHENOTYPE: Very slow growth and absence of expansion of cotyledons or development of normal leaves or floral organs. Short root with an excess of abnormal root hairs. Extremely rare production of some photosynthetic tissue. {ECO:0000269|PubMed:16015335, ECO:0000269|PubMed:23067104}. Seedlings homozygous for the T-DNA insertion completely lacked expression of DAYSLEEPER. Mutant seedlings grew very slowly and showed no expansion of the cotyledons or development of normal leaves or floral organs. The root remained short and had an excess of abnormal root hairs. The main and lateral root meristems appeared to have a normal organization when young but as they matured became increasingly disorganized. After prolonged growth on plates a few seedlings (1%) produced some photosynthetic tissue. Seedling lethal; Albino-P. Hooykaas-2005 FUNCTION: Transposase-like protein that is essential for plant growth and development. Binds the promoter region of the DNA helicase KU70 and genes involved in chromatin remodeling. May regulate global gene expression by recruiting other cellular factors. {ECO:0000269|PubMed:16015335, ECO:0000269|PubMed:23067104}. 78814,76328 Zinc finger BED domain-containing protein DAYSLEEPER (Transposase-like protein DAYSLEEPER),BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER cytosol [GO:0005829]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; post-embryonic development [GO:0009791]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] locus:2100809; AT3G42170 ZnF_BED NA NA NA NA NA NA NA ENOG411DV8N Q9C7N5,Q9C7N4,A0A1P8ASL8 GDL14_ARATH,GDL15_ARATH,A0A1P8ASL8_ARATH GDSL esterase/lipase At1g29660 (EC 3.1.1.-) (Apoplastic EDS1-dependent protein 3) (Extracellular lipase At1g29660),GDSL esterase/lipase At1g29670 (EC 3.1.1.-) (Extracellular lipase At1g29670),GDSL-like Lipase/Acylhydrolase superfamily protein FUNCTION: Involved in EDS1-dependent systemic acquired resistance, maybe in phloem-mediated long-distance signaling. {ECO:0000269|PubMed:24755512}. ARA:AT1G29660-MONOMER;,ARA:AT1G29670-MONOMER; 3.1.1.- 40142,39872,47730 GDSL esterase/lipase At1g29660 (EC 3.1.1.-) (Apoplastic EDS1-dependent protein 3) (Extracellular lipase At1g29660),GDSL esterase/lipase At1g29670 (EC 3.1.1.-) (Extracellular lipase At1g29670),GDSL-like Lipase/Acylhydrolase superfamily protein apoplast [GO:0048046]; nucleus [GO:0005634]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042]; systemic acquired resistance [GO:0009627],apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] TISSUE SPECIFICITY: Found in phloem exudates. {ECO:0000269|PubMed:22639651}. locus:2013658;,locus:2013663; AT1G29660,AT1G29670 GDSL esterase lipase Os05g0518300 protein (Putative GDSL-like lipase/hydrolase) (cDNA clone:006-208-D08, full insert sequence),Os01g0748500 protein (Putative proline-rich protein) Q75II0,Q94J26 Q75II0_ORYSJ,Q94J26_ORYSJ Os05g0518300 B1130G10.22 OSNPB_050518300,Os01g0748500 OsJ_03450 OSNPB_010748500 P0481E12.27 ENOG411DV8M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0643100 protein (Fragment),Os07g0115800 protein (Fragment),Os07g0210800 protein (Fragment),Os10g0468301 protein (Fragment),Os09g0122200 protein (Fragment) Q0DQ23,A0A0P0X1M8,A0A0P0X3X1,A0A0P0XVR7,A0A0N7KQD1 Q0DQ23_ORYSJ,A0A0P0X1M8_ORYSJ,A0A0P0X3X1_ORYSJ,A0A0P0XVR7_ORYSJ,A0A0N7KQD1_ORYSJ Os03g0643100 OSNPB_030643100,Os07g0115800 OSNPB_070115800,Os07g0210800 OSNPB_070210800,Os10g0468301 OSNPB_100468301,Os09g0122200 OSNPB_090122200 ENOG411DV8J Q8L7S3,F4IIP9 C3H24_ARATH,F4IIP9_ARATH Zinc finger CCCH domain-containing protein 24 (AtC3H24) (EC 2.1.1.-),Zinc finger (CCCH-type) family protein 2.1.1.- 89023,88413 Zinc finger CCCH domain-containing protein 24 (AtC3H24) (EC 2.1.1.-),Zinc finger (CCCH-type) family protein DNA binding [GO:0003677]; metal ion binding [GO:0046872]; RNA methyltransferase activity [GO:0008173]; RNA processing [GO:0006396],metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; RNA methyltransferase activity [GO:0008173]; RNA processing [GO:0006396] locus:2056553; AT2G28450 zinc finger CCCH domain-containing protein Os04g0105000 protein A0A0P0W5V0 A0A0P0W5V0_ORYSJ Os04g0105000 OSNPB_040105000 ENOG411DV8K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411DV8H MEE6.9 Q9FLM7 Q9FLM7_ARATH Gb|AAC33480.1 (MYB transcription factor) (Myb family transcription factor) (Uncharacterized protein At5g41020) 68196 Gb|AAC33480.1 (MYB transcription factor) (Myb family transcription factor) (Uncharacterized protein At5g41020) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2163066; AT5G41020 transcription factor Os06g0303700 protein A0A0P0WVK7 A0A0P0WVK7_ORYSJ Os06g0303700 OSNPB_060303700 ENOG411DV8I NRPB7 P38421 NRPB7_ARATH DNA-directed RNA polymerase II subunit 7 (RNA polymerase II subunit B7) FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB7 is part of a subcomplex with NRPB4 that binds to a pocket formed by NRPB1, NRPB2 and NRPB6 at the base of the clamp element. The NRBP4-NRPB7 subcomplex seems to lock the clamp via NRPB7 in the closed conformation thus preventing double-stranded DNA to enter the active site cleft. The NRPB4-NRPB7 subcomplex binds single-stranded DNA and RNA (By similarity). {ECO:0000250, ECO:0000269|PubMed:19110459}. R-ATH-113418;R-ATH-5578749;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-72163;R-ATH-72165;R-ATH-72203;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 19462 DNA-directed RNA polymerase II subunit 7 (RNA polymerase II subunit B7) DNA-directed RNA polymerase II, core complex [GO:0005665]; P-body [GO:0000932]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; single-stranded DNA binding [GO:0003697]; single-stranded RNA binding [GO:0003727]; translation initiation factor binding [GO:0031369]; nuclear-transcribed mRNA catabolic process, exonucleolytic [GO:0000291]; positive regulation of nuclear-transcribed mRNA poly(A) tail shortening [GO:0060213]; positive regulation of translational initiation [GO:0045948]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2168514; AT5G59180 DNA-directed RNA polymerase II Os05g0400700 protein (Putative RNA polymerase II subunit 5) (cDNA clone:J023138C10, full insert sequence) Q6ATY6 Q6ATY6_ORYSJ Os05g0400700 OsJ_18478 OSJNBa0035J16.7 OSNPB_050400700 ENOG411DV8V BLH4,BLH2 Q94KL5,Q9SW80,A0A1P8B7E4,A0A1P8AZ70,A0A1P8B7F4 BLH4_ARATH,BLH2_ARATH,A0A1P8B7E4_ARATH,A0A1P8AZ70_ARATH,A0A1P8B7F4_ARATH BEL1-like homeodomain protein 4 (BEL1-like protein 4) (Protein SAWTOOTH 2),BEL1-like homeodomain protein 2 (BEL1-like protein 2) (Protein SAWTOOTH 1),BEL1-like homeodomain 2,BEL1-like homeodomain 4 FUNCTION: Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.,FUNCTION: Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. 69271,81605,62593,75656,61243 BEL1-like homeodomain protein 4 (BEL1-like protein 4) (Protein SAWTOOTH 2),BEL1-like homeodomain protein 2 (BEL1-like protein 2) (Protein SAWTOOTH 1),BEL1-like homeodomain 2,BEL1-like homeodomain 4 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; leaf morphogenesis [GO:0009965]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. locus:2049035;,locus:2115000; AT2G23760,AT4G36870 homeodomain protein Homeodomain protein JUBEL1, putative, expressed (Os03g0732100 protein) Q10DD6 Q10DD6_ORYSJ Os03g0732100 LOC_Os03g52239 OSNPB_030732100 ENOG411DV8W SCC4 Q9FGN7 SCC4_ARATH Sister chromatid cohesion protein SCC4 (Protein SISTER-CHROMATID COHESION 4) (AtSCC4) DISRUPTION PHENOTYPE: Defective embryo arrested at preglobular/early globular stage. Suspensor overproliferation phenotype preceded by ectopic auxin maxima distribution. Reduced efficacy of cohesin immobilization in nuclei. {ECO:0000269|PubMed:28137757}. FUNCTION: Essential protein required for cell fate determination during embryogenesis. Involved in sister chromatid cohesion. Forms a complex with SCC2, which is required for the association of the cohesin complex with chromosomes. {ECO:0000269|PubMed:28137757}. R-ATH-2470946; 81880 Sister chromatid cohesion protein SCC4 (Protein SISTER-CHROMATID COHESION 4) (AtSCC4) chromatin [GO:0000785]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; SMC loading complex [GO:0032116]; double-stranded DNA binding [GO:0003690]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; maintenance of mitotic sister chromatid cohesion [GO:0034088] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:28137757}. locus:2163655; AT5G51340 Inherit from KOG: MAU2 chromatid cohesion factor homolog (C. elegans) Os04g0347600 protein,Os04g0347800 protein (Fragment),Os12g0434601 protein (Fragment) Q0JE08,Q0JE06,A0A0P0Y9K1 Q0JE08_ORYSJ,Q0JE06_ORYSJ,A0A0P0Y9K1_ORYSJ Os04g0347600 Os04g0347600 OSNPB_040347600,Os04g0347800 Os04g0347800 OSNPB_040347800,Os12g0434601 OSNPB_120434601 ENOG411DV8T T12C14_30 Q9LZQ7,A0A1I9LQ18 Q9LZQ7_ARATH,A0A1I9LQ18_ARATH At3g62330 (Uncharacterized protein T12C14_30) (Zinc knuckle (CCHC-type) family protein),Zinc knuckle (CCHC-type) family protein 55961,44487 At3g62330 (Uncharacterized protein T12C14_30) (Zinc knuckle (CCHC-type) family protein),Zinc knuckle (CCHC-type) family protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2096004; AT3G62330 Zinc knuckle Os01g0252900 protein (cDNA clone:001-114-C08, full insert sequence) Q5NBC3 Q5NBC3_ORYSJ Os01g0252900 Os01g0252900 OSNPB_010252900 P0434D08.42 P0503G09.9 ENOG411DV8U Q93Z10,A0A1P8BG13 Q93Z10_ARATH,A0A1P8BG13_ARATH AT5g11580/F15N18_170 (Regulator of chromosome condensation (RCC1) family protein),Regulator of chromosome condensation (RCC1) family protein 60543,44499 AT5g11580/F15N18_170 (Regulator of chromosome condensation (RCC1) family protein),Regulator of chromosome condensation (RCC1) family protein locus:2144291; AT5G11580 E3 ubiquitin-protein ligase HERC2-like BNR repeat domain protein-like (Os01g0725600 protein) (cDNA clone:J033034G02, full insert sequence) Q8S160 Q8S160_ORYSJ Os01g0725600 Os01g0725600 OSNPB_010725600 P0042A10.13 ENOG411DV8R A0A1P8B236,F4IG63,F4IG62,F4IG61 A0A1P8B236_ARATH,F4IG63_ARATH,F4IG62_ARATH,F4IG61_ARATH SMAD/FHA domain-containing protein 99827,101556,101428,99956 SMAD/FHA domain-containing protein transcription factor activity, sequence-specific DNA binding [GO:0003700],cytoplasm [GO:0005737]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2050867; AT2G45460 FHA domain FHA domain containing protein, expressed (Os03g0127600 protein) Q10SC2 Q10SC2_ORYSJ Os03g0127600 LOC_Os03g03560 Os03g0127600 OsJ_09255 OSNPB_030127600 ENOG411DV8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin light chain Clathrin light chain 1 Q7XKE9 CLC1_ORYSJ Os04g0679100 LOC_Os04g58240 OsJ_16638 OSJNBb0017I01.5 FUNCTION: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. ENOG411DV8P MDE13.4 Q6DBD7 Q6DBD7_ARATH At5g46220 (Transmembrane protein (DUF616)) (Turgor regulation defect 1) 53882 At5g46220 (Transmembrane protein (DUF616)) (Turgor regulation defect 1) Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; pollen tube [GO:0090406]; dihydroceramidase activity [GO:0071633]; transferase activity, transferring glycosyl groups [GO:0016757]; pollen tube growth [GO:0009860]; regulation of stomatal opening [GO:1902456]; stomatal movement [GO:0010118] locus:2162065; AT5G46220 Protein of unknown function (DUF616) Os01g0210400 protein Q9LDD9 Q9LDD9_ORYSJ Os01g0210400 OSNPB_010210400 P0031E09.12 P0466B10.22 ENOG411DV8Q LPPG Q6NLA5 LPPG_ARATH Lipid phosphate phosphatase gamma (AtLPPG) (EC 3.1.3.-) (Phosphatidic acid phosphatase gamma) (Plastidic phosphatidic acid phosphatase gamma) DISRUPTION PHENOTYPE: Lethal effect when homozygous, due to defect in pollen germination and pollen tube growth. {ECO:0000269|PubMed:17652095}. FUNCTION: Exhibits phosphatidate phosphatase (PAP) activity in vitro. May play a primary role as PAP in plastids. {ECO:0000269|PubMed:17652095}. R-ATH-446199; 3.1.3.4; 3.1.3.- 25754 Lipid phosphate phosphatase gamma (AtLPPG) (EC 3.1.3.-) (Phosphatidic acid phosphatase gamma) (Plastidic phosphatidic acid phosphatase gamma) chloroplast [GO:0009507]; chloroplast inner membrane [GO:0009706]; integral component of endoplasmic reticulum membrane [GO:0030176]; dolichyldiphosphatase activity [GO:0047874]; phosphatidate phosphatase activity [GO:0008195]; diacylglycerol biosynthetic process [GO:0006651]; pollen tube development [GO:0048868]; protein N-linked glycosylation [GO:0006487] TISSUE SPECIFICITY: Expressed in root tips, root branch points, vascular tissue of cotyledons and leaves, pistil, anthers and filaments. {ECO:0000269|PubMed:17652095}. locus:2143433; AT5G03080 dolichyldiphosphatase NA NA NA NA NA NA NA ENOG411DV8Z Q9C8Z4,F4JAY0,F4JAY1,A0A1I9LP29,A0A1I9LP28 HEAT1_ARATH,F4JAY0_ARATH,F4JAY1_ARATH,A0A1I9LP29_ARATH,A0A1I9LP28_ARATH Uncharacterized protein At3g06530,ARM repeat superfamily protein FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity). {ECO:0000250}. R-ATH-6791226; 246322,246349,245173,247498,247697 Uncharacterized protein At3g06530,ARM repeat superfamily protein 90S preribosome [GO:0030686]; small-subunit processome [GO:0032040]; t-UTP complex [GO:0034455]; snoRNA binding [GO:0030515]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; positive regulation of transcription from RNA polymerase I promoter [GO:0045943],chloroplast [GO:0009507]; vacuole [GO:0005773] locus:2084299; AT3G06530 U3 small nucleolar RNA-associated protein 10 NA NA NA NA NA NA NA ENOG411DV8X O80734 O80734_ARATH Expressed protein (Transcription factor-like protein) (Uncharacterized protein At2g46900) 71421 Expressed protein (Transcription factor-like protein) (Uncharacterized protein At2g46900) cytosol [GO:0005829] locus:2041344; AT2G46900 transcription factor 25-like Os09g0514900 protein (cDNA clone:J033091L10, full insert sequence) Q69IM4 Q69IM4_ORYSJ Os09g0514900 Os09g0514900 OsJ_30003 OSNPB_090514900 P0450E05.22 ENOG411DV8Y EIF(ISO)4E O04663 IF4E4_ARATH Eukaryotic translation initiation factor isoform 4E (eIF(iso)4E) (Protein LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) (eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso protein) (mRNA cap-binding protein) DISRUPTION PHENOTYPE: Decreased susceptibility to TuMV and TEV. {ECO:0000269|PubMed:12123581}. Resistant to potyviruses-J. Carrington-2002 FUNCTION: Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Mediates susceptibility to Turnipmosaic potyvirus (TuMV) and Tobacco etch potyvirus (TEV). {ECO:0000269|PubMed:12123581, ECO:0000269|PubMed:9234949}. R-ATH-156827;R-ATH-72662;R-ATH-72702; 22514 Eukaryotic translation initiation factor isoform 4E (eIF(iso)4E) (Protein LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) (eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso protein) (mRNA cap-binding protein) cytoplasm [GO:0005737]; cytosol [GO:0005829]; mRNA cap binding complex [GO:0005845]; nucleus [GO:0005634]; RNA 7-methylguanosine cap binding [GO:0000340]; translation initiation factor activity [GO:0003743]; negative regulation of defense response to virus [GO:0050687]; regulation of translation [GO:0006417]; response to virus [GO:0009615] TISSUE SPECIFICITY: Abundant in floral organs and in young developing tissues. {ECO:0000269|PubMed:9234949}. locus:2165892; AT5G35620 translation Initiation Factor Eukaryotic translation initiation factor isoform 4E-2 (eIF(iso)-4E-2) (eIF(iso)4E-2) (eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit) (mRNA cap-binding protein) P48600 IF4E2_ORYSJ Os10g0467600 LOC_Os10g32970 OsJ_31838 OSJNBa0006L06.9 FUNCTION: Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. ENOG411DV86 APD5 O81760,A0A1P8B792,A0A1P8B7A5 P2C63_ARATH,A0A1P8B792_ARATH,A0A1P8B7A5_ARATH Probable protein phosphatase 2C 63 (AtPP2C63) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 42318,29849,33203 Probable protein phosphatase 2C 63 (AtPP2C63) (EC 3.1.3.16),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2118899; AT4G33920 phosphatase 2C Probable protein phosphatase 2C 78 (OsPP2C78) (EC 3.1.3.16),Probable protein phosphatase 2C 61 (OsPP2C61) (EC 3.1.3.16),Probable protein phosphatase 2C 34 (OsPP2C34) (EC 3.1.3.16) (BTH-induced protein phosphatase 2C 2) (OsBIPP2C2),Os03g0104100 protein (Fragment) Q2QN36,Q7XHN8,Q94H98,Q0DW01 P2C78_ORYSJ,P2C61_ORYSJ,P2C34_ORYSJ,Q0DW01_ORYSJ Os12g0580900 LOC_Os12g39120,Os07g0114000 LOC_Os07g02330 OJ1513_F02.129 OsJ_021960,BIPP2C2 Os03g0761100 LOC_Os03g55320 OsJ_12676 OSJNBb0048A17.8,Os03g0104100 OSNPB_030104100 ENOG411DV87 SUVH3,SUVH10,SUVH1 Q9C5P4,Q3EC60,Q9FF80 SUVH3_ARATH,SUVHA_ARATH,SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3) (H3-K9-HMTase 3) (Protein SET DOMAIN GROUP 19) (Suppressor of variegation 3-9 homolog protein 3) (Su(var)3-9 homolog protein 3),Putative inactive histone-lysine N-methyltransferase family member SUVH10 (Histone H3-K9 methyltransferase 10) (H3-K9-HMTase 10) (Protein SET DOMAIN GROUP 11) (Suppressor of variegation 3-9 homolog protein 10) (Su(var)3-9 homolog protein 10),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1) (H3-K9-HMTase 1) (Protein SET DOMAIN GROUP 32) (Suppressor of variegation 3-9 homolog protein 1) (Su(var)3-9 homolog protein 1) FUNCTION: Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.,FUNCTION: Histone methyltransferase family member that may lack methyltransferase activity. May methylate 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression (Potential). {ECO:0000305}.,FUNCTION: Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. {ECO:0000269|PubMed:15775980}. R-ATH-3214841; 2.1.1.43 73439,35023,74471 Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3) (H3-K9-HMTase 3) (Protein SET DOMAIN GROUP 19) (Suppressor of variegation 3-9 homolog protein 3) (Su(var)3-9 homolog protein 3),Putative inactive histone-lysine N-methyltransferase family member SUVH10 (Histone H3-K9 methyltransferase 10) (H3-K9-HMTase 10) (Protein SET DOMAIN GROUP 11) (Suppressor of variegation 3-9 homolog protein 10) (Su(var)3-9 homolog protein 10),Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1) (H3-K9-HMTase 1) (Protein SET DOMAIN GROUP 32) (Suppressor of variegation 3-9 homolog protein 1) (Su(var)3-9 homolog protein 1) chromosome [GO:0005694]; chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; DNA binding [GO:0003677]; histone binding [GO:0042393]; histone methyltransferase activity [GO:0042054]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; regulation of gene expression, epigenetic [GO:0040029],chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; histone binding [GO:0042393]; metal ion binding [GO:0046872]; covalent chromatin modification [GO:0016569],chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; histone binding [GO:0042393]; histone-lysine N-methyltransferase activity [GO:0018024]; zinc ion binding [GO:0008270]; regulation of gene expression, epigenetic [GO:0040029] TISSUE SPECIFICITY: Expressed in leaves stems and flowers. {ECO:0000269|PubMed:11691919}. locus:2032592;,locus:2064676;,locus:2175289; AT1G73100,AT2G05900,AT5G04940 histone-lysine N-methyltransferase H3 lysine-9 specific Os11g0602200 protein (YDG/SRA domain containing protein, expressed) (cDNA clone:J033092A08, full insert sequence),Os03g0320400 protein (Pre-SET motif family protein, expressed) (cDNA clone:J023112P17, full insert sequence),Os11g0602200 protein (Fragment) Q2R1K5,Q10M77,A0A0P0Y4B3 Q2R1K5_ORYSJ,Q10M77_ORYSJ,A0A0P0Y4B3_ORYSJ Os11g0602200 LOC_Os11g38900 Os11g0602200 OSNPB_110602200,Os03g0320400 LOC_Os03g20430 Os03g0320400 OSNPB_030320400,Os11g0602200 OSNPB_110602200 ENOG411DV84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os04g0113000 protein (cDNA clone:001-114-D01, full insert sequence),F-box domain containing protein, expressed (Os03g0668000 protein) (cDNA clone:J023013A18, full insert sequence) (cDNA clone:J023087J12, full insert sequence),Os03g0664300 protein,Os03g0653100 protein,Os03g0669900 protein,Os04g0113000 protein,Os03g0652400 protein,Os03g0632200 protein,Os03g0677101 protein (Fragment),Os03g0653300 protein,Os03g0668100 protein (Fragment) Q0JFD5,Q7Y195,A0A0P0W1N3,A0A0P0W0W5,A0A0P0W1I3,A0A0P0W6W3,A0A0N7KHR2,A0A0P0W0H6,A0A0P0W1X6,A0A0P0W0U1,A0A0P0W1S6 Q0JFD5_ORYSJ,Q7Y195_ORYSJ,A0A0P0W1N3_ORYSJ,A0A0P0W0W5_ORYSJ,A0A0P0W1I3_ORYSJ,A0A0P0W6W3_ORYSJ,A0A0N7KHR2_ORYSJ,A0A0P0W0H6_ORYSJ,A0A0P0W1X6_ORYSJ,A0A0P0W0U1_ORYSJ,A0A0P0W1S6_ORYSJ Os04g0113000 Os04g0113000 OSNPB_040113000,OSJNBa0039O18.23 LOC_Os03g46510 Os03g0668000 OSNPB_030668000,Os03g0664300 OSNPB_030664300,Os03g0653100 OSNPB_030653100,Os03g0669900 OSNPB_030669900,Os04g0113000 OSNPB_040113000,Os03g0652400 OSNPB_030652400,Os03g0632200 OSNPB_030632200,Os03g0677101 OSNPB_030677101,Os03g0653300 OSNPB_030653300,Os03g0668100 OSNPB_030668100 ENOG411DV85 WRKY31,WRKY42,WRKY6 Q93WT0,Q9XEC3,Q9C519,A0A1P8B5W9 WRK31_ARATH,WRK42_ARATH,WRKY6_ARATH,A0A1P8B5W9_ARATH Probable WRKY transcription factor 31 (WRKY DNA-binding protein 31),WRKY transcription factor 42 (WRKY DNA-binding protein 42),WRKY transcription factor 6 (WRKY DNA-binding protein 6) (AtWRKY6),WRKY family transcription factor Resistant to limited phosphate-W. Wu-2009 FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.,FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.,FUNCTION: Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. 58541,58071,60593,47294 Probable WRKY transcription factor 31 (WRKY DNA-binding protein 31),WRKY transcription factor 42 (WRKY DNA-binding protein 42),WRKY transcription factor 6 (WRKY DNA-binding protein 6) (AtWRKY6),WRKY family transcription factor nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cellular response to boron-containing substance deprivation [GO:0080169]; cellular response to phosphate starvation [GO:0016036]; ethylene-activated signaling pathway [GO:0009873]; negative regulation of transcription, DNA-templated [GO:0045892]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. locus:2120623;,locus:2137179;,locus:2018052; AT4G22070,AT4G04450,AT1G62300 Transcription factor Os01g0246700 protein (Putative WRKY transcription factor 6),Os05g0567200 protein Q5NAL3,A0A0P0WQ06 Q5NAL3_ORYSJ,A0A0P0WQ06_ORYSJ Os01g0246700 OSJNBa0004G10.25 OSNPB_010246700 P0034C11.1,Os05g0567200 OSNPB_050567200 ENOG411DV82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NB-ARC domain containing protein, expressed (NBS-LRR type protein) (Os11g0225300 protein),Os11g0226400 protein (Fragment),Os11g0225300 protein (Fragment) Q2R8L1,A0A0P0Y0X0,A0A0P0Y0S6 Q2R8L1_ORYSJ,A0A0P0Y0X0_ORYSJ,A0A0P0Y0S6_ORYSJ Os11gRGA5 LOC_Os11g11810 Os11g0225300 OsJ_33425 OSNPB_110225300,Os11g0226400 OSNPB_110226400,Os11g0225300 OSNPB_110225300 ENOG411DV83 JMJ25,IBM1 Q9SSE9,C0SUU8,Q8VYB9,C0SV12,A0A1P8B5A8,A0A1P8AUH1,F4JFK6,A0A1P8B5A7,F4JFK4 JMJ25_ARATH,C0SUU8_ARATH,Q8VYB9_ARATH,C0SV12_ARATH,A0A1P8B5A8_ARATH,A0A1P8AUH1_ARATH,F4JFK6_ARATH,A0A1P8B5A7_ARATH,F4JFK4_ARATH Lysine-specific demethylase JMJ25 (EC 1.14.11.-) (Jumonji domain-containing protein 25) (Lysine-specific histone demethylase JMJ25) (Protein INCREASE IN BONSAI METHYLATION 1) (Protein JUMONJI 25),Transcription factor jumonji (JmjC) domain-containing protein (Uncharacterized protein At1g11950) (Fragment),Transcription factor jumonji (JmjC) domain-containing protein (Uncharacterized protein At4g00990),Transcription factor jumonji (JmjC) domain-containing protein (Uncharacterized protein At1g62310) (Fragment),Transcription factor jumonji (JmjC) domain-containing protein DISRUPTION PHENOTYPE: Small and narrow leaves, arrest in flower development, degenerated pollen grains and reduced fertility leading to few viable seeds. Non-CpG hypermethylation at APC13, RDR2 and DCL3 loci. {ECO:0000269|PubMed:18218897, ECO:0000269|PubMed:22580822, ECO:0000269|PubMed:22772985}. The ibm1-4 mutation causes hypermethylation of the BONSAI (At1g73177) locus in the first generation in which the mutant allele becomes homozygous and there is a higher level of H3mK9 at the BONSAI locus in ibm1-4 mutant than in wild type rosette leaves. ibm1-4 mutants have morphological defects that become apparent at the F3 generation including small narrow leaves arrested flower development and faulty pollen development. The growth defects observed in ibm1-4 are exacerbated in a ddm1-1 mutant background ddm1-1has also been shown to cause BONSAI hypermethylation. Meanwhile DNA methylation and developmental defects are suppressed in kyp (At5g13960) and cmt3 (At1g69770) mutant backgrounds.,The ibm1-1 mutation causes hypermethylation of the BONSAI (At1g73177) locus in the first generation in which the mutant allele becomes homozygous. The BONSAI gene undergoes cytosine methylation primarily associated with non-CG sites in the ibm1-1 mutant whereas there is almost no evidence of cytosine methylation at this locus in wild type seedlings. Methylation at repetitive regions including centromeric satellites or 5S rRNA genes are not compromised in the ibm1-1 mutant. ibm1-1 mutants have morphological defects that become apparent at the F3 generation including small narrow leaves arrested flower development and faulty pollen development. Small, narrow leaves; Arrested flower development; Reduced fertility-T. Kakutani-2008 FUNCTION: Histone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me2 and H3K9me1. No activity on H3K9me3, H3K4me3/2/1, H3K27me3/2/1 and H3K36me3/2/1. Involved in the control of several developmental processes by protecting genes from silencing. Demethylates H3K9me2 in the promoter regions of RDR2 and DCL3 and mediates the repression of ectopic non-CpG methylation at RDR2, DCL3 and APC13 loci. Protects also a large number of transcribed genes from non-CpG methylation. May regulate gene expression via a pathway involving indirect silencing of gene expression through small RNA-directed DNA methylation (RdDM)-directed repression. {ECO:0000269|PubMed:18218897, ECO:0000269|PubMed:19262562, ECO:0000269|PubMed:20834229, ECO:0000269|PubMed:22580822, ECO:0000269|PubMed:22772985}. R-ATH-3214842;R-ATH-983231; 1.14.11.- 116253,100146,96105,101477,88755,92294,86422,89013,118886 Lysine-specific demethylase JMJ25 (EC 1.14.11.-) (Jumonji domain-containing protein 25) (Lysine-specific histone demethylase JMJ25) (Protein INCREASE IN BONSAI METHYLATION 1) (Protein JUMONJI 25),Transcription factor jumonji (JmjC) domain-containing protein (Uncharacterized protein At1g11950) (Fragment),Transcription factor jumonji (JmjC) domain-containing protein (Uncharacterized protein At4g00990),Transcription factor jumonji (JmjC) domain-containing protein (Uncharacterized protein At1g62310) (Fragment),Transcription factor jumonji (JmjC) domain-containing protein chromatin [GO:0000785]; nucleus [GO:0005634]; dioxygenase activity [GO:0051213]; histone demethylase activity (H3-K9 specific) [GO:0032454]; metal ion binding [GO:0046872]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; negative regulation of gene silencing [GO:0060969]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chromatin [GO:0000785]; nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; histone demethylase activity (H3-K9 specific) [GO:0032454]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; histone H3-K9 demethylation [GO:0033169]; regulation of transcription, DNA-templated [GO:0006355],chromatin [GO:0000785]; nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; histone demethylase activity (H3-K9 specific) [GO:0032454]; metal ion binding [GO:0046872]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; histone H3-K9 demethylation [GO:0033169]; regulation of transcription, DNA-templated [GO:0006355],chromatin DNA binding [GO:0031490]; histone demethylase activity (H3-K9 specific) [GO:0032454]; DNA methylation on cytosine [GO:0032776]; flower development [GO:0009908]; histone H3-K9 demethylation [GO:0033169]; leaf development [GO:0048366]; pollen development [GO:0009555]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; regulation of gene expression [GO:0010468]; RNA-directed DNA methylation [GO:0080188] locus:2008875;,locus:2125221;,locus:2027109;,locus:2091117; AT3G07610,AT4G00990 transcription factor jumonji (jmjC) domain-containing protein Os02g0109400 protein,Os02g0109501 protein,Os09g0393200 protein (Fragment) A0A0P0VE06,A0A0P0VE20,A0A0P0XMK7 A0A0P0VE06_ORYSJ,A0A0P0VE20_ORYSJ,A0A0P0XMK7_ORYSJ Os02g0109400 OSNPB_020109400,Os02g0109501 OSNPB_020109501,Os09g0393200 OSNPB_090393200 ENOG411DV80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411DV81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os04g0675600 protein (Fragment) A0A0P0WGB0 A0A0P0WGB0_ORYSJ Os04g0675600 OSNPB_040675600 ENOG411DV88 SIP2-1,SIP2:1 Q9M1K3,F4J0V0 SIP21_ARATH,F4J0V0_ARATH Probable aquaporin SIP2-1 (Small basic intrinsic protein 2-1) (AtSIP2;1),Small and basic intrinsic protein 21 FUNCTION: Water channel required to facilitate the transport of water across cell membrane. Inactive in yeast cells. {ECO:0000269|PubMed:16223486}. 25945,28518 Probable aquaporin SIP2-1 (Small basic intrinsic protein 2-1) (AtSIP2;1),Small and basic intrinsic protein 21 endoplasmic reticulum membrane [GO:0005789]; integral component of plasma membrane [GO:0005887]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in dividing cells and elongating regions of the root tips, emerging lateral roots, root steles, cotyledons, main veins of the rosette leaves, vascular tissues of the flower petals, stigma, stamens (anthers and filaments), pollen and the top and bottom (receptacle) of siliques. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:16223486}. locus:2080570; AT3G56950 Aquaporin Aquaporin SIP2-1 (OsSIP2;1) (Small basic intrinsic protein 2-1) Q10M80 SIP21_ORYSJ SIP2-1 Os03g0320000 LOC_Os03g20410 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411DV89 ADA2A,ADA2B Q9SFD5,Q9ATB4,F4JFM6,A8MRD5 TAD2A_ARATH,TAD2B_ARATH,F4JFM6_ARATH,A8MRD5_ARATH Transcriptional adapter ADA2a (AtADA2a),Transcriptional adapter ADA2b (AtADA2b) (Protein PROPORZ 1),Transcriptional adapter DISRUPTION PHENOTYPE: Plants have pleiotropic effects on plant growth and development, including dwarf size, aberrant root development, and short petals and stamens in flowers. ADA2a cannot rescue any of the mutant phenotypes. {ECO:0000269|PubMed:12615937, ECO:0000269|PubMed:12747832}. Altered response to auxin and cytokinin Altered response to auxin and cytokinin-C. Luschnig-2002 FUNCTION: Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known (By similarity). ADA2 stimulates the acetyltransferase activity of GCN5 on free histones or nucleosomes, probably by opening up the promoter region. {ECO:0000250}.,FUNCTION: Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known (By similarity). ADA2 stimulates the acetyltransferase activity of GCN5 on free histones or nucleosomes, probably by opening up the promoter region. Mediates auxin and cytokinin signals in the control of cell proliferation and might be involved in repression of a freezing tolerance pathway at warm temperature (PubMed:12615937, PubMed:12747832). Involved in the positive regulation of salt-induced gene expression by maintaining locus-specific acetylation of histones H4 and H3 (PubMed:21193996). {ECO:0000250, ECO:0000269|PubMed:12615937, ECO:0000269|PubMed:12747832, ECO:0000269|PubMed:21193996}. R-ATH-5689880; 62042,56186,62887,60126 Transcriptional adapter ADA2a (AtADA2a),Transcriptional adapter ADA2b (AtADA2b) (Protein PROPORZ 1),Transcriptional adapter nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; chromatin remodeling [GO:0006338]; histone acetylation [GO:0016573]; positive regulation of histone acetylation [GO:0035066]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; chromatin remodeling [GO:0006338]; cold acclimation [GO:0009631]; histone acetylation [GO:0016573]; positive regulation of histone acetylation [GO:0035066]; regulation of cell proliferation [GO:0042127]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; zinc ion binding [GO:0008270]; regulation of histone acetylation [GO:0035065]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; zinc ion binding [GO:0008270]; regulation of histone acetylation [GO:0035065]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:11266554}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques, with the strongest activity in the meristematic zones. {ECO:0000269|PubMed:11266554, ECO:0000269|PubMed:12747832}. locus:2130609;,locus:2077517; AT3G07740,AT4G16420 transcriptional adapter Transcriptional adapter ADA2,Os03g0750800 protein (Fragment) Q75LL6,A0A0N7KI22,A0A0P0W329 TADA2_ORYSJ,A0A0N7KI22_ORYSJ,A0A0P0W329_ORYSJ ADA2 Os03g0750800 LOC_Os03g53960 OSJNBa0047E24.21,Os03g0750800 OSNPB_030750800 FUNCTION: Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. ENOG411EDK5 KIN14K,KIN14J F4JX00,B3H6Z8,A0A1P8AT87,A0A1P8ATA6,F4I3N9 KN14K_ARATH,KN14J_ARATH,A0A1P8AT87_ARATH,A0A1P8ATA6_ARATH,F4I3N9_ARATH Kinesin-like protein KIN-14K,Kinesin-like protein KIN-14J (Kinesin KinG),p-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein ARA:GQT-2360-MONOMER;,ARA:GQT-802-MONOMER; 109700,119785,119872,118714,119158 Kinesin-like protein KIN-14K,Kinesin-like protein KIN-14J (Kinesin KinG),p-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2155095;,locus:2026639; AT5G41310,AT1G63640 Calponin homology (CH) domain NA NA NA NA NA NA NA ENOG411EHG3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: sperm flagellar 2 NA NA NA NA NA NA NA ENOG411DV0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Os01g0920450 protein,Os01g0920500 protein (Fragment) A0A0P0VC80,A0A0P0VC72 A0A0P0VC80_ORYSJ,A0A0P0VC72_ORYSJ Os01g0920450 OSNPB_010920450,Os01g0920500 OSNPB_010920500 ENOG411DV0F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nitrate transporter Os04g0660900 protein (cDNA clone:002-152-C12, full insert sequence),Os01g0913300 protein (Putative nitrate transporter NRT1-5) (cDNA clone:J023114K11, full insert sequence) Q0J9C7,Q5N7W6 Q0J9C7_ORYSJ,Q5N7W6_ORYSJ Os04g0660900 Os04g0660900 OSNPB_040660900,Os01g0913300 Os01g0913300 OsJ_04516 OSNPB_010913300 P0470A12.43 ENOG411EK3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase NA NA NA NA NA NA NA ENOG411EK3V PRT1 Q8LBL5 PRT1_ARATH E3 ubiquitin-protein ligase PRT1 (EC 2.3.2.27) (Proteolysis 1 protein) (RING-type E3 ubiquitin transferase PRT1) FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. Functions in the N-end rule pathway of protein degradation, where it specifically recognizes and ubiquitinates proteins with a N-terminal bulky aromatic amino acid (Phe). Does not act on aliphatic hydrophobic and basic N-terminal residues (Arg or Leu) containing proteins. {ECO:0000269|PubMed:11607348, ECO:0000269|PubMed:14551326, ECO:0000269|PubMed:17572409, ECO:0000269|PubMed:9653113}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. 2.3.2.27 45937 E3 ubiquitin-protein ligase PRT1 (EC 2.3.2.27) (Proteolysis 1 protein) (RING-type E3 ubiquitin transferase PRT1) cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; ubiquitin-dependent protein catabolic process via the N-end rule pathway [GO:0071596] locus:2087278; AT3G24800 Zinc finger ZZ type Os02g0621500 protein (Putative PRT1 protein) (cDNA clone:J023012G01, full insert sequence) Q6K9N9 Q6K9N9_ORYSJ Os02g0621500 Os02g0621500 OJ1234_B11.14 OsJ_07567 OSNPB_020621500 ENOG411EK3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 Os08g0233900 protein (cDNA clone:J033077D15, full insert sequence),Os09g0456900 protein,OSJNBa0061G20.5 protein (Os04g0362501 protein) Q6YYR5,C7J6F7,Q7XMF4 Q6YYR5_ORYSJ,C7J6F7_ORYSJ,Q7XMF4_ORYSJ Os08g0233900 B1047A05.34 OSNPB_080233900,Os09g0456900 OSNPB_090456900,OSJNBa0061G20.5 Os04g0362501 OSNPB_040362501 ENOG411EK3M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 Os02g0528500 protein (Replication protein-like),Os10g0197600 protein,Os07g0113000 protein (Fragment),Os01g0932000 protein Q6H6P4,A0A0P0XSF6,A0A0P0X1X6,A0A0P0VCH0 Q6H6P4_ORYSJ,A0A0P0XSF6_ORYSJ,A0A0P0X1X6_ORYSJ,A0A0P0VCH0_ORYSJ P0475F05.21-2 Os02g0528500 P0476H10.5-2 OSNPB_020528500,Os10g0197600 OSNPB_100197600,Os07g0113000 OSNPB_070113000,Os01g0932000 OSNPB_010932000 ENOG411E8I0 MLP3.2 Q8W482 Q8W482_ARATH Fanconi anemia group D2 protein (Uncharacterized protein At3g07570) (Uncharacterized protein At3g07570; MLP3.2) 7581 Fanconi anemia group D2 protein (Uncharacterized protein At3g07570) (Uncharacterized protein At3g07570; MLP3.2) locus:1005716532; AT3G07568 Inherit from KOG: Ferric-chelate reductase NA NA NA NA NA NA NA ENOG411E8I1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP NA NA NA NA NA NA NA ENOG411E8I4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0420200 protein A0A0P0XLT6 A0A0P0XLT6_ORYSJ Os09g0420200 OSNPB_090420200 ENOG411E8I5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8I6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8I7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMA0 Q9FYL1 Q9FYL1_ARATH F21J9.19 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g24530) 45944 F21J9.19 (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At1g24530) plasma membrane [GO:0005886] locus:2024031; AT1G24530 myosin heavy chain kinase NA NA NA NA NA NA NA ENOG411EMA3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411E8IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thylakoid soluble phosphoprotein TSP9 NA NA NA NA NA NA NA ENOG411E8IR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF493) NA NA NA NA NA NA NA ENOG411E8IS Q8VYY6 Q8VYY6_ARATH CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (Uncharacterized protein At1g19020) 9155 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (Uncharacterized protein At1g19020) transferase activity [GO:0016740]; response to oxidative stress [GO:0006979] locus:2011296; AT1G19020 Inherit from KOG: DNA crosslink repair NA NA NA NA NA NA NA ENOG411E8IT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8IU CEP12,CEP4 P0DN99,Q3EBM6 PCP12_ARATH,PCEP4_ARATH Precursor of CEP12 (PCEP12) [Cleaved into: C-terminally encoded peptide 12 (CEP12)],Precursor of CEP4 (PCEP4) [Cleaved into: C-terminally encoded peptide 4 (CEP4)] FUNCTION: Extracellular signaling peptide that may regulate primary root growth rate and systemic nitrogen (N)-demand signaling. {ECO:0000250|UniProtKB:Q8L8Y3}.,FUNCTION: Extracellular signaling peptide that represses primary root growth rate. Promotes shoot growth and modulates leaf morphology (PubMed:24179096). Regulates systemic nitrogen (N)-demand signaling. Mediates up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). {ECO:0000269|PubMed:24179096, ECO:0000269|PubMed:25324386}. 10321,9755 Precursor of CEP12 (PCEP12) [Cleaved into: C-terminally encoded peptide 12 (CEP12)],Precursor of CEP4 (PCEP4) [Cleaved into: C-terminally encoded peptide 4 (CEP4)] apoplast [GO:0048046]; hormone activity [GO:0005179]; nitrate import [GO:1902025]; regulation of root development [GO:2000280]; response to jasmonic acid [GO:0009753]; root development [GO:0048364],apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; nitrate import [GO:1902025]; regulation of leaf morphogenesis [GO:1901371]; regulation of root development [GO:2000280]; regulation of shoot system development [GO:0048831]; response to ammonium ion [GO:0060359]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed at low levels in flowers (PubMed:18315543). Present in lateral roots, shoot apical meristem (SAM), flowers and siliques (PubMed:24179095). {ECO:0000269|PubMed:18315543, ECO:0000269|PubMed:24179095}. locus:2028666;,locus:1006230136; AT1G31670,AT2G35612 Copper amine oxidase NA NA NA NA NA NA NA ENOG411E8IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0594900 protein (Proline-rich protein-like) (cDNA clone:J023074J04, full insert sequence) Q8L4A1 Q8L4A1_ORYSJ Os01g0594900 B1103C09.9 OSNPB_010594900 P0451D05.22 ENOG411E8IW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0520500 protein (cDNA clone:002-135-E03, full insert sequence) Q650U2 Q650U2_ORYSJ Os09g0520500 OSNPB_090520500 P0669G04.10 ENOG411E8IX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8IE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Coiled-coil domain containing 42 NA NA NA NA NA NA NA ENOG411E8IF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: WD repeat domain 96 NA NA NA NA NA NA NA ENOG411E8IG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8IH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8II Q6NPG3,A0A1P8ARD0,A0A1P8ARC6 Q6NPG3_ARATH,A0A1P8ARD0_ARATH,A0A1P8ARC6_ARATH At1g07300 (Josephin protein-like protein),Josephin protein-like protein 13890,21140,14583 At1g07300 (Josephin protein-like protein),Josephin protein-like protein integral component of membrane [GO:0016021] locus:2025017; AT1G07300 Inherit from KOG: Josephin domain containing NA NA NA NA NA NA NA ENOG411E8IJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0713700 protein A0A0P0W290 A0A0P0W290_ORYSJ Os03g0713700 OSNPB_030713700 ENOG411E8IK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMAB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411EMAJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family Endonuclease/Exonuclease/phosphatase family protein, expressed (Os12g0414900 protein) Q2QSX3 Q2QSX3_ORYSJ Os12g0414900 LOC_Os12g22620 OSNPB_120414900 ENOG411E9WR Cand2,Cand8 Q94AH1,F4K2U8 Q94AH1_ARATH,F4K2U8_ARATH Uncharacterized protein At3g05010,Uncharacterized protein 34063,34138 Uncharacterized protein At3g05010,Uncharacterized protein integral component of membrane [GO:0016021]; response to molecule of bacterial origin [GO:0002237]; root morphogenesis [GO:0010015],integral component of membrane [GO:0016021] locus:2114835;,locus:2181231; AT3G05010,AT5G27210 Predicted membrane protein NA NA NA NA NA NA NA ENOG411E9WF UBC28 F4I5B8 F4I5B8_ARATH Ubiquitin-conjugating enzyme 28 21259 Ubiquitin-conjugating enzyme 28 plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ubiquitin-protein transferase activity [GO:0004842]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2024643; AT1G64230 Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411EMAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Formin Homology 2 Domain NA NA NA NA NA NA NA ENOG411DPXP MFH8.3 F4KJ04 F4KJ04_ARATH RING/U-box superfamily protein 42935 RING/U-box superfamily protein integral component of membrane [GO:0016021]; polysaccharide binding [GO:0030247]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2163761; AT5G53110 finger protein NA NA NA NA NA NA NA ENOG411DPXQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF4206 NA NA NA NA NA NA NA ENOG411DPXW PCMP-H3 O23337 PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 82113 Pentatricopeptide repeat-containing protein At4g14820 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2130354; AT4G14820 Pentatricopeptide repeat-containing protein Os04g0221300 protein (Fragment) Q0JEQ5,A0A0P0W7L2 Q0JEQ5_ORYSJ,A0A0P0W7L2_ORYSJ Os04g0221300 Os04g0221300 OSNPB_040221300,Os04g0221300 OSNPB_040221300 ENOG411DPXA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 family protein, expressed (Os12g0582666 protein),Os12g0582000 protein Q2QN17,A0A0P0YC40 Q2QN17_ORYSJ,A0A0P0YC40_ORYSJ LOC_Os12g39300 Os12g0582666 OSNPB_120582666,Os12g0582000 OSNPB_120582000 ENOG411DPXC UAH Q8VXY9 UAH_ARATH Ureidoglycolate hydrolase (AtUAH) (EC 3.5.1.116) (Allantoate amidohydrolase 2) (AtAHH2) (Ureidoglycolate amidohydrolase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants show a slight reduction of growth on a medium containing allantoin as the sole nitrogen source and accumulate ureidoglycolate. {ECO:0000269|PubMed:23940254}. FUNCTION: Involved in the catabolism of purine nucleotides. Can use (S)-ureidoglycolate as substrate, but not (R)-ureidoglycolate or allantoate. The sequential activity of AAH, UGLYAH and UAH allows a complete purine breakdown without the intermediate generation of urea. {ECO:0000269|PubMed:19935661, ECO:0000269|PubMed:23940254}. PATHWAY: Nitrogen metabolism; (S)-allantoin degradation; glyoxylate from (S)-ureidoglycolate: step 1/1. ARA:AT5G43600-MONOMER;MetaCyc:AT5G43600-MONOMER; 3.5.1.116 51487 Ureidoglycolate hydrolase (AtUAH) (EC 3.5.1.116) (Allantoate amidohydrolase 2) (AtAHH2) (Ureidoglycolate amidohydrolase) endoplasmic reticulum [GO:0005783]; metal ion binding [GO:0046872]; ureidoglycolate hydrolase activity [GO:0004848]; allantoin catabolic process [GO:0000256]; purine nucleobase catabolic process [GO:0006145]; ureide catabolic process [GO:0010136] locus:2158342; AT5G43600 Peptidase family M28 Probable ureidoglycolate hydrolase (OsUAH) (EC 3.5.1.116),Os12g0597500 protein (Fragment) Q2QMN7,A0A0P0YBW4 UAH_ORYSJ,A0A0P0YBW4_ORYSJ UAH Os12g0597500 LOC_Os12g40550 OsJ_36749,Os12g0597500 OSNPB_120597500 FUNCTION: Involved in the catabolism of purine nucleotides. The sequential activity of AAH, UGLYAH and UAH allows a complete purine breakdown without the intermediate generation of urea. {ECO:0000269|PubMed:23940254}. ENOG411DPXD O82462 SYEC_ARATH Glutamate--tRNA ligase, cytoplasmic (EC 6.1.1.17) (GluRSAt) (Glutamyl-tRNA synthetase) (GluRS) FUNCTION: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). {ECO:0000250|UniProtKB:P46655}. ARA:AT5G26710-MONOMER; 6.1.1.17; Biosynthesis of secondary metabolites (01110),Aminoacyl-tRNA biosynthesis (00970),Metabolic pathways (01100),Porphyrin and chlorophyll metabolism (00860) 6.1.1.17 81065 Glutamate--tRNA ligase, cytoplasmic (EC 6.1.1.17) (GluRSAt) (Glutamyl-tRNA synthetase) (GluRS) cytosol [GO:0005829]; ATP binding [GO:0005524]; glutamate-tRNA ligase activity [GO:0004818]; glutamyl-tRNA aminoacylation [GO:0006424] locus:2146769; AT5G26710 Glutamyl-tRNA synthetase Glutamyl-tRNA synthetase family protein, expressed (Os10g0369000 protein) (Putative glutamyl-tRNA synthetase),Os01g0271200 protein (Putative multifunctional amino acid-tRNA ligase),Os10g0369000 protein (Fragment) Q8S5M6,Q9LIZ8,A0A0P0XTX6 Q8S5M6_ORYSJ,Q9LIZ8_ORYSJ,A0A0P0XTX6_ORYSJ Os10g0369000 LOC_Os10g22380 Os10g0369000 OJ1003C07.13 OsJ_31262 OSNPB_100369000,Os01g0271200 OsJ_01247 OSNPB_010271200 P0693B08.12,Os10g0369000 OSNPB_100369000 ENOG411DPXF ATM Q9M3G7,A0A1I9LQ79,A0A1I9LQ78 ATM_ARATH,A0A1I9LQ79_ARATH,A0A1I9LQ78_ARATH Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia telangiectasia mutated homolog) (AtATM),Serine/Threonine-kinase ATM-like protein DISRUPTION PHENOTYPE: Plants show meiotic defects, hypersensitivity to double strand breaks-inducing agents, and an inability to properly induce IR-mediated transcription of several DNA repair genes. {ECO:0000269|PubMed:12509526}. During five generations of growth both tert and atm/tert lose about 500 bp of chromosome length per generation. But whereas tert mutants show no visible growth defects through the G6 generation atm/tert mutants in G5 show severe growth defects such as aberrant leaf shape delayed flowering a loss of apical dominance and reduced fertility. atm/tert mutants in G5 have a much higher rate of bridged chromosomes than G5 tert mutants.,atm tert mutants undergo Telomere Rapid Deletion (TRD) events that can lead to the production of a chromosome with a very short telomere. Just one of these structures can prompt end-to-end chromosomal fusion events in the G5 generation. The anaphase bridges apparent in these atm/tert mutants seem to involve only a single chromosome in each distinct mutant line and seem to occur between sister chromatids. These plants exhibit the same overall level of aneuploidy in the G5 generation as tert mutants do in the G6 generation (~52% of cells showing abnormal centromeric signals in interphase). atm/tert mutants are not as likely to undergo ALT (alternative lengthening of telomeres a telomerase-independent process) as tert mutants implicating AtM in this process.,Double mutants are defective in telomere maintainance. Mutants form anaphase bridges. Reduced female fertility-A. Tissier-2003 FUNCTION: Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR) or DNA replication stalling. Plays a central role in the perception and response to both stress-induced damage in somatic cells and developmentally programmed DNA damage during meiosis. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone variant H2AX to form H2AXS139ph at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Involved in transcriptional regulation of RAD51, PARP1, GR1, and LIG4 in response to DNA double strand breaks. Plays a dual role by activating the DNA damage response at dysfunctional telomeres and yet preventing this activation at functional telomeres. Not required for telomere length homeostasis. {ECO:0000269|PubMed:12509526, ECO:0000269|PubMed:15772150, ECO:0000269|PubMed:16166376}. ARA:AT3G48190-MONOMER; R-ATH-2559586;R-ATH-3371453;R-ATH-349425;R-ATH-5693548;R-ATH-5693565;R-ATH-5693607;R-ATH-5693616;R-ATH-6803207; 2.7.11.1 435114,341538,338766 Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia telangiectasia mutated homolog) (AtATM),Serine/Threonine-kinase ATM-like protein nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; protein serine/threonine kinase activity [GO:0004674]; cellular response to DNA damage stimulus [GO:0006974]; meiotic cell cycle [GO:0051321],ATP binding [GO:0005524]; kinase activity [GO:0016301] TISSUE SPECIFICITY: Ubiquitously expressed at low levels with slightly higher levels in flower buds. {ECO:0000269|PubMed:10734187}. AT3G48190 serine threonine-protein kinase Os01g0106700 protein A0A0P0UX66 A0A0P0UX66_ORYSJ Os01g0106700 OSNPB_010106700 ENOG411DPXK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) Cytochrome b561 and DOMON domain-containing protein Q8H7W3 Q8H7W3_ORYSJ Os03g0194300 LOC_Os03g09850 Os03g0194300 OsJ_09756 OSJNBa0064E16.14 OSNPB_030194300 ENOG411DPX3 SSL3 Q8VWF6,Q9C586 SSL3_ARATH,Q9C586_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 3 (AtSSL3) (Strictosidine synthase 9) (AtSS9),At5g22020 (Calcium-dependent phosphotriesterase superfamily protein) (Putative strictosidine synthase-like) ARA:GQT-2306-MONOMER;,ARA:GQT-1906-MONOMER; 44037,44528 Protein STRICTOSIDINE SYNTHASE-LIKE 3 (AtSSL3) (Strictosidine synthase 9) (AtSS9),At5g22020 (Calcium-dependent phosphotriesterase superfamily protein) (Putative strictosidine synthase-like) endoplasmic reticulum [GO:0005783]; vacuolar membrane [GO:0005774]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058],endoplasmic reticulum [GO:0005783]; vacuolar membrane [GO:0005774]; hydrolase activity, acting on ester bonds [GO:0016788]; strictosidine synthase activity [GO:0016844]; biosynthetic process [GO:0009058] locus:2201841;,locus:504956439; AT1G08470,AT5G22020 strictosidine synthase Os03g0750700 protein Q0DNI8 Q0DNI8_ORYSJ Os03g0750700 Os03g0750700 OSNPB_030750700 ENOG411DPX6 CARB Q42601 CARB_ARATH Carbamoyl-phosphate synthase large chain, chloroplastic (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) (Protein VENOSA 6) Pale green leaves; Small, reticulated rosette leaves; Heterozygotes: Intermediate phenotype-J. Micol-2011 FUNCTION: Involved in arginine biosynthesis. Required for mesophyll development. {ECO:0000269|PubMed:21265888}. MISCELLANEOUS: The ven3-1, ven3-2, ven3-3 and ven3-4 phenotypes are rescued by exogenous application of citrulline, an arginine precursor. {ECO:0000305|PubMed:21265888}. PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.; PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3. ARA:AT1G29900-MONOMER; R-ATH-500753;R-ATH-70635; 6.3.5.5 129957 Carbamoyl-phosphate synthase large chain, chloroplastic (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) (Protein VENOSA 6) carbamoyl-phosphate synthase complex [GO:0005951]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; ATP binding [GO:0005524]; carbamoyl-phosphate synthase (ammonia) activity [GO:0004087]; carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [GO:0004088]; metal ion binding [GO:0046872]; 'de novo' UMP biosynthetic process [GO:0044205]; arginine biosynthetic process [GO:0006526]; cellular response to phosphate starvation [GO:0016036]; urea cycle [GO:0000050] TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:15820655}. locus:2019302; AT1G29900 Carbamoyl-phosphate synthase Carbamoyl-phosphate synthase large chain, chloroplastic (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain),Os01g0570700 protein (Fragment) B9EXM2,A0A0P0V4H1 CARB_ORYSJ,A0A0P0V4H1_ORYSJ CARB Os01g0570700 LOC_Os01g38970 OsJ_02282,Os01g0570700 OSNPB_010570700 FUNCTION: Involved in arginine biosynthesis. {ECO:0000250}. ENOG411DPX7 PLC4,PLC8 Q944C1,Q9STZ3,A0A1I9LSP9 PLCD4_ARATH,PLCD8_ARATH,A0A1I9LSP9_ARATH Phosphoinositide phospholipase C 4 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC4) (AtPLC4) (PI-PLC4),Phosphoinositide phospholipase C 8 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC8) (AtPLC8) (PI-PLC8),Phosphoinositide phospholipase C (EC 3.1.4.11) FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. {ECO:0000269|Ref.7}.,FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. {ECO:0000250}. ARA:AT5G58700-MONOMER;,ARA:AT3G47290-MONOMER; R-ATH-112043;R-ATH-114604;R-ATH-1855204;R-ATH-202433;R-ATH-399997;R-ATH-416476;R-ATH-434316;R-ATH-5607764; 3.1.4.11; Phosphatidylinositol signaling system (04070),Calcium signaling pathway (04020),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.4.11 68038,61076,65982 Phosphoinositide phospholipase C 4 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC4) (AtPLC4) (PI-PLC4),Phosphoinositide phospholipase C 8 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC8) (AtPLC8) (PI-PLC8),Phosphoinositide phospholipase C (EC 3.1.4.11) cytosol [GO:0005829]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042],intracellular [GO:0005622]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042],intracellular [GO:0005622]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Low expression in leaves, roots, flowers and siliques. Expressed in pollen and in cells of the stigma surface. {ECO:0000269|Ref.7}.,TISSUE SPECIFICITY: Expressed in leaves, roots, flowers and siliques. {ECO:0000269|Ref.6}. locus:2178848;,locus:2099530; AT5G58700,AT3G47290 phospholipase C Phosphoinositide phospholipase C (EC 3.1.4.11) B9F7R4 B9F7R4_ORYSJ Os03g0289300 OsJ_10440 OSNPB_030289300 ENOG411DPX9 CRYD Q84KJ5 CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial (Cryptochrome-3) FUNCTION: May have a photoreceptor function. Binds ss- and ds-DNA in a sequence non-specific manner. Has a photolyase activity specific for cyclobutane pyrimidine dimers in ssDNA. {ECO:0000269|PubMed:17062752}. MISCELLANEOUS: 5,10-methenyltetrahydrofolate (MTHF) acts as a functional antenna for the photoreduction of FAD. ARA:AT5G24850-MONOMER; 64983 Cryptochrome DASH, chloroplastic/mitochondrial (Cryptochrome-3) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA photolyase activity [GO:0003913]; photoreceptor activity [GO:0009881]; DNA repair [GO:0006281]; protein-chromophore linkage [GO:0018298] AT5G24850 Cryptochrome DASH chloroplastic Cryptochrome DASH, chloroplastic/mitochondrial,Os06g0661800 protein,Os06g0661800 protein (Fragment) Q651U1,Q0DAD1,A0A0P0X023 CRYD_ORYSJ,Q0DAD1_ORYSJ,A0A0P0X023_ORYSJ CRYD Os06g0661800 LOC_Os06g45100 OSJNBa0051O02.40 OSJNBb0065C04.7,Os06g0661800 Os06g0661800 OSNPB_060661800,Os06g0661800 OSNPB_060661800 FUNCTION: May have a photoreceptor function. Binds ss- and ds-DNA in a sequence non-specific manner, lacks photolyase activity (By similarity). {ECO:0000250}. ENOG411E3UW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family HVA22-like protein (Fragment) A0A0P0XQY9 A0A0P0XQY9_ORYSJ Os09g0533800 OSNPB_090533800 ENOG411E3UV AGL19 O82743,A0A1P8B3X0 AGL19_ARATH,A0A1P8B3X0_ARATH Agamous-like MADS-box protein AGL19,AGAMOUS-like 19 DISRUPTION PHENOTYPE: Decreased response to vernalization, the promotion of flowering by prolonged cold. {ECO:0000269|PubMed:16778081}. Mutants flowered normally in long day conditions but flowered slightly later than wild type in short day.,clf leaf phenotype but partially suppressed the early flowering phenotype.,The double mutant responded less to vernalization than either single mutant.,Double mutant flowered later than the soc1 single mutant and this delay was more pronounced in SD (additional 15 leaves) than in LD (additional two leaves). Slightly late flowering under short days-L. Hennig-2006 FUNCTION: Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. 25049,20043 Agamous-like MADS-box protein AGL19,AGAMOUS-like 19 nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]; transcription, DNA-templated [GO:0006351]; vernalization response [GO:0010048],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in the outer layers of the root meristem (lateral root cap and epidermis) and in the central cylinder cells of mature roots. Also present in rosette leaves and seedlings and, to a lesser extent, in cauline leaves and flowers. Enriched in apices including the shoot apical meristem and developing leaf primordia. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:16778081}. locus:2127213; AT4G22950 transcription factor NA NA NA NA NA NA NA ENOG411E3UU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0165300 protein,Os11g0164100 protein (Fragment) A0A0P0XZA9,A0A0P0XZ66 A0A0P0XZA9_ORYSJ,A0A0P0XZ66_ORYSJ Os11g0165300 OSNPB_110165300,Os11g0164100 OSNPB_110164100 ENOG411E3UT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411E3US NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin Os02g0125400 protein (PREG-like protein) Q6Z2N6 Q6Z2N6_ORYSJ P0482F12.2 Os02g0125400 OSNPB_020125400 ENOG411E3UR CASP-like protein 5B3 Q8L7R5,A0A1I9LPH0 CSPLG_ARATH,A0A1I9LPH0_ARATH CASP-like protein 5B3 (AtCASPL5B3),CASP-like protein 16092,13547 CASP-like protein 5B3 (AtCASPL5B3),CASP-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] DEVELOPMENTAL STAGE: Present in the root maturation zone, and in lateral root primordia. Expressed in two parallel files that are probably xylem pole pericycle cells. In leaves, detected in files of cells parallel to the vasculature. {ECO:0000269|PubMed:24920445}. TISSUE SPECIFICITY: Expressed in the stele of the root and in leaves. {ECO:0000269|PubMed:24920445}. locus:2086258; AT3G23200 CASP-like protein NA NA NA NA NA NA NA ENOG411E3UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os02g0193300 protein (cDNA clone:002-140-G11, full insert sequence),Os02g0193100 protein,Os02g0193200 protein (cDNA, clone: J100043J15, full insert sequence) Q7F8S2,Q7F8S4,Q7F8S3 Q7F8S2_ORYSJ,Q7F8S4_ORYSJ,Q7F8S3_ORYSJ P0437H03.120 Os02g0193300 OSNPB_020193300,P0437H03.116 Os02g0193100 OsJ_05719 OSNPB_020193100,P0437H03.118 Os02g0193200 OSNPB_020193200 ENOG411E3UP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1645 domain containing protein Os01g0639600 protein (cDNA clone:J013088M21, full insert sequence) Q94CX7 Q94CX7_ORYSJ Os01g0639600 Os01g0639600 OSNPB_010639600 P0004A09.33 ENOG411E3UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os12g0600701 protein) Q2QMK7 Q2QMK7_ORYSJ LOC_Os12g40840 Os12g0600701 OSNPB_120600701 ENOG411E3UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E3UX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1110) Os01g0157500 protein A0A0P0UYR6 A0A0P0UYR6_ORYSJ Os01g0157500 OSNPB_010157500 ENOG411E3UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alba Expressed protein (Os12g0489300 protein) (cDNA clone:J023100D18, full insert sequence) Q2QQM2 Q2QQM2_ORYSJ LOC_Os12g30550 Os12g0489300 OsJ_36129 OSNPB_120489300 ENOG411E3UF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF538 domain containing protein Expressed protein (Os11g0594700 protein),Expressed protein (Os11g0594800 protein) (cDNA, clone: J043016C12, full insert sequence),Os11g0595000 protein Q2R1S6,Q2R1S5,A0A0P0Y3W3 Q2R1S6_ORYSJ,Q2R1S5_ORYSJ,A0A0P0Y3W3_ORYSJ Os11g0594700 LOC_Os11g38210 Os11g0594700 OsJ_34463 OSNPB_110594700,Os11g0594800 LOC_Os11g38220 Os11g0594800 OsJ_34462 OSNPB_110594800,Os11g0595000 OSNPB_110595000 ENOG411E3UE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Multiple C2 domains transmembrane Os02g0665100 protein A0A0P0VMN6 A0A0P0VMN6_ORYSJ Os02g0665100 OSNPB_020665100 ENOG411E3UD O82812 O82812_ARATH At2g46000 (Expressed protein) (LDL receptor wingless signaling/trafficking chaperone) (Uncharacterized protein At2g46000) 23983 At2g46000 (Expressed protein) (LDL receptor wingless signaling/trafficking chaperone) (Uncharacterized protein At2g46000) protein folding [GO:0006457] locus:2050689; AT2G46000 NA Os03g0148300 protein A0A0N7KGK8 A0A0N7KGK8_ORYSJ Os03g0148300 OSNPB_030148300 ENOG411E3UC BLOS2 F4K657 BL1S2_ARATH Biogenesis of lysosome-related organelles complex 1 subunit 2 (BLOC-1 subunit 2) FUNCTION: Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1), a complex that mediates the vacuolar degradative transport via the intracellular vesicle trafficking from the endosome to the vacuole. {ECO:0000269|PubMed:20971704}. 14266 Biogenesis of lysosome-related organelles complex 1 subunit 2 (BLOC-1 subunit 2) BLOC-1 complex [GO:0031083]; endosome [GO:0005768]; intracellular [GO:0005622]; oxidoreductase activity [GO:0016491] locus:2157854; AT5G49550 Biogenesis of lysosome-related organelles complex-1 subunit 2 NA NA NA NA NA NA NA ENOG411E3UB F4KA12 F4KA12_ARATH PIF1 helicase 37869 PIF1 helicase DNA helicase activity [GO:0003678]; DNA repair [GO:0006281]; telomere maintenance [GO:0000723] locus:2184256; AT5G28780 Pfam:DUF889 NA NA NA NA NA NA NA ENOG411E3UA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1685) Os02g0766600 protein (cDNA clone:006-204-C02, full insert sequence) (cDNA clone:J033072H02, full insert sequence) Q6Z313 Q6Z313_ORYSJ Os02g0766600 Os02g0766600 OJ1004_A11.19 OSNPB_020766600 P0539D10.38 ENOG411E3UN FRL1 Q9FFF1 FRL1A_ARATH FRIGIDA-like protein 1 (AtFRIL1) (Protein SUPPRESSOR OF FRI 8) DISRUPTION PHENOTYPE: Reduced levels of FLC expression and early flowering, but not redundant with FRI. Frl1 and frl2 double mutants flower earlier than frl1 single mutant, due to a partial redundancy. {ECO:0000269|PubMed:14973192}. FUNCTION: Required for FRI-mediated up-regulation of FLC transcripts, but not redundant with FRI and only partially redundant with FRL2. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:14973192, ECO:0000269|PubMed:17056759, ECO:0000269|PubMed:21282526}. MISCELLANEOUS: In cv. Columbia and cv. Landsberg erecta, either FRL1 or FRL2, but not both, is functional and required for FRI-mediated up-regulation of FLC (PubMed:17056759). {ECO:0000305|PubMed:17056759}. 52831 FRIGIDA-like protein 1 (AtFRIL1) (Protein SUPPRESSOR OF FRI 8) cell differentiation [GO:0030154]; flower development [GO:0009908] TISSUE SPECIFICITY: Expressed during seed development and in dry seed. Preferentially expressed in the chalazal endosperm during early stages of seed development. {ECO:0000269|PubMed:20405310}. locus:2171327; AT5G16320 Frigida-like protein NA NA NA NA NA NA NA ENOG411E3UM LOL1 Q93ZB1,A0A1P8AMJ2,A0A1P8AMH0,A0A1P8AMG8 LOL1_ARATH,A0A1P8AMJ2_ARATH,A0A1P8AMH0_ARATH,A0A1P8AMG8_ARATH Protein LOL1 (Protein LSD ONE LIKE 1) (AtLOL1) (Putative zinc finger LOL1),Lsd one like 1 FUNCTION: Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. MISCELLANEOUS: Over-expression of LOL1 induces cell death. 15872,11208,16379,15621 Protein LOL1 (Protein LSD ONE LIKE 1) (AtLOL1) (Putative zinc finger LOL1),Lsd one like 1 nucleus [GO:0005634]; DNA binding [GO:0003677]; defense response, incompatible interaction [GO:0009814]; plant-type hypersensitive response [GO:0009626]; positive regulation of plant-type hypersensitive response [GO:0034052]; positive regulation of programmed cell death [GO:0043068]; regulation of removal of superoxide radicals [GO:2000121],integral component of membrane [GO:0016021] locus:2206649; AT1G32540 LSD1 zinc finger domain containing protein expressed Protein LOL1 (Protein LSD ONE LIKE 1) (OsLOL1) (Putative zinc finger LOL1),Protein LSD1 (Protein LESION SIMULATING DISEASE 1) (OsLSD1) (Putative zinc finger LSD1),Os02g0807700 protein,Os08g0159500 protein (Fragment) Q69UP7,Q0J7V9,C7IYF9,A0A0P0XC75 LOL1_ORYSJ,LSD1_ORYSJ,C7IYF9_ORYSJ,A0A0P0XC75_ORYSJ LOL1 Os07g0472200 P0675B10.121,LSD1 Os08g0159500 LOC_Os08g06280 OsJ_26122,Os02g0807700 Os02g0807700 OSNPB_020807700,Os08g0159500 OSNPB_080159500 FUNCTION: Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.,FUNCTION: Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. MISCELLANEOUS: Plants silencing LSD1 display a lesion-mimic phenotype, increased pathogen induction of PR1, enhanced resistance to virulent rice blast fungus and accelerated and intensified hypersensitive response to avirulent pathogens. Plants overexpressing LSD1 show increased content of chlorophyll b and enhanced resistance to virulent rice blast fungus. Callus overexpressing LSD1 shows accelerated differentiation and plant regeneration. ENOG411E3UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os03g0322700 protein A0A0P0VWV8 A0A0P0VWV8_ORYSJ Os03g0322700 OSNPB_030322700 ENOG411E3UJ SKIP27,FBS2 Q8GX77,O65416,A0A1P8B7S2 FB316_ARATH,SKI27_ARATH,A0A1P8B7S2_ARATH F-box protein At1g61340,F-box protein SKIP27 (SKP1-interacting partner 27),F-box family protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 21026,25569,19073 F-box protein At1g61340,F-box protein SKIP27 (SKP1-interacting partner 27),F-box family protein nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:2119607; AT1G61340,AT4G21510 F-Box protein Os07g0561300 protein (cDNA clone:J023149I22, full insert sequence) Q6ZF52 Q6ZF52_ORYSJ Os07g0561300 Os07g0561300 OsJ_24735 OSNPB_070561300 P0406F06.10 P0567H04.44 ENOG411E3UI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM Os03g0850300 protein (SAM domain family protein, expressed) Q84J66 Q84J66_ORYSJ Os03g0850300 LOC_Os03g63320 Os03g0850300 OSJNBa0015N08.4 OSJNBb0096M04.10 OSNPB_030850300 ENOG411E3UH A0JPW4 A0JPW4_ARATH At4g14145 (Cytochrome C oxidase assembly protein) 14895 At4g14145 (Cytochrome C oxidase assembly protein) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966] locus:504955447; AT4G14145 Inherit from KOG: protein 2 3 complex subunit Kinesin like protein, putative, expressed (Os03g0288400 protein) Q10MZ9 Q10MZ9_ORYSJ Os03g0288400 LOC_Os03g17910 OsJ_10431 OSNPB_030288400 ENOG411E3U7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os08g0563500 protein (Zinc finger (C3HC4-type RING finger) protein family-like),Os02g0820200 protein (Zinc finger (C3HC4-type RING finger)-like) Q84ZB5,Q6K716 Q84ZB5_ORYSJ,Q6K716_ORYSJ P0705A05.103 Os08g0563500 OsJ_28303 OSNPB_080563500 P0543D10.34,Os02g0820200 Os02g0820200 OJ1202_E07.30 OsJ_08900 OSNPB_020820200 P0474F11.11 ENOG411E3U6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 AP2 domain-containing transcription factor-like (Os02g0764700 protein) (cDNA clone:002-124-D09, full insert sequence) Q6Z7P9 Q6Z7P9_ORYSJ Os02g0764700 Os02g0764700 OsJ_08495 OSNPB_020764700 P0539D10.19 ENOG411E3U5 PNSB4,PnsB4 Q8RXS1,A0A1P8AS98,B3H6Z4,F4ICC6,A8MRZ5 PNSB4_ARATH,A0A1P8AS98_ARATH,B3H6Z4_ARATH,F4ICC6_ARATH,A8MRZ5_ARATH Photosynthetic NDH subunit of subcomplex B 4, chloroplastic (Protein PnsB4) (NDH DEPENDENT FLOW 6) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 6),NDH dependent flow 6 DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:18535009}. Impaired NAD(P)H dehydrogenase activity Decreased post-illumination chlorophyll fluorescence-F. Sato-2008 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 20396,14963,18676,20268,16002 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic (Protein PnsB4) (NDH DEPENDENT FLOW 6) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 6),NDH dependent flow 6 chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; photosynthetic electron transport in photosystem I [GO:0009773]; transport [GO:0006810],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; photosynthetic electron transport in photosystem I [GO:0009773],chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; photosynthetic electron transport in photosystem I [GO:0009773] locus:2034980; AT1G18730 NA Os02g0744000 protein (cDNA clone:001-041-G04, full insert sequence) (cDNA clone:J013000L12, full insert sequence) Q6Z2U3 Q6Z2U3_ORYSJ Os02g0744000 OJ1734_E02.25 OsJ_08355 OSNPB_020744000 ENOG411E3U3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Reverse transcriptase (RNA-dependent DNA polymerase) NA NA NA NA NA NA NA ENOG411E3U2 Q9LMQ8,Q9M8M0 Q9LMQ8_ARATH,Q9M8M0_ARATH At1g15760 (F7H2.10) (Sterile alpha motif (SAM) domain-containing protein),Sterile alpha motif (SAM) domain-containing protein (Uncharacterized protein T21F11.15) 23594,22235 At1g15760 (F7H2.10) (Sterile alpha motif (SAM) domain-containing protein),Sterile alpha motif (SAM) domain-containing protein (Uncharacterized protein T21F11.15) locus:2036129;,locus:2198953; AT1G15760,AT1G80520 NA OSJNBa0033G05.11 protein (Os04g0644100 protein) (cDNA clone:002-119-E07, full insert sequence) Q7XTN1 Q7XTN1_ORYSJ Os04g0644100 Os04g0644100 OsJ_16388 OSJNBa0033G05.11 OSNPB_040644100 ENOG411E3U1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Os01g0949300 protein (cDNA clone:J023142M19, full insert sequence) Q8RZB7 Q8RZB7_ORYSJ Os01g0949300 B1147A04.15 OSNPB_010949300 ENOG411E3U0 Q9LZM6 Q9LZM6_ARATH At5g02050 (Mitochondrial glycoprotein family protein) (Uncharacterized protein At5g02050) (Uncharacterized protein T7H20_100) 29764 At5g02050 (Mitochondrial glycoprotein family protein) (Uncharacterized protein At5g02050) (Uncharacterized protein T7H20_100) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739] locus:2185093; AT5G02050 Mitochondrial glycoprotein family protein NA NA NA NA NA NA NA ENOG411E3U9 RAD52-2 Q9FIJ4 RD522_ARATH DNA repair RAD52-like protein 2, chloroplastic (Organellar DNA-binding protein 2) DISRUPTION PHENOTYPE: Reduced fertility, increased sensitivity to mitomycin C, and decreased levels of intrachromosomal recombination. {ECO:0000269|PubMed:22202891}. FUNCTION: Involved in double-stranded DNA break repair. {ECO:0000269|PubMed:22202891}. 21409 DNA repair RAD52-like protein 2, chloroplastic (Organellar DNA-binding protein 2) chloroplast [GO:0009507]; DNA binding [GO:0003677]; double-strand break repair via homologous recombination [GO:0000724] TISSUE SPECIFICITY: Expressed in roots and shoots. Expressed at low levels in cauline leaves, flower buds, flowers and siliques. {ECO:0000269|PubMed:22202891}. locus:2160967; AT5G47870 NA Os03g0851500 protein (SnRK1-interacting protein 1, putative, expressed),Os09g0512800 protein Q10AI2,A0A0P0XQ11 Q10AI2_ORYSJ,A0A0P0XQ11_ORYSJ Os03g0851500 LOC_Os03g63450 Os03g0851500 OSNPB_030851500,Os09g0512800 OSNPB_090512800 ENOG411DST4 ABCG32 O81016 AB32G_ARATH ABC transporter G family member 32 (ABC transporter ABCG.32) (AtABCG32) (Pleiotropic drug resistance protein 4) (Protein PERMEABLE CUTICLE 1) DISRUPTION PHENOTYPE: Chemical composition modifications and structural alterations of the cuticular layer of the cell wall leading to increased permeability of the cuticle, increased sensitivity to herbicide (glufosidate), increased cuticular transpiration and increased resistance to Botrytis cinerea. {ECO:0000269|PubMed:21628525}. FUNCTION: May be a general defense protein (By similarity). Required for the formation of the cuticle layer of the cell wall (PubMed:21628525). {ECO:0000250, ECO:0000269|PubMed:21628525}. 161265 ABC transporter G family member 32 (ABC transporter ABCG.32) (AtABCG32) (Pleiotropic drug resistance protein 4) (Protein PERMEABLE CUTICLE 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; cuticle development [GO:0042335]; drug transmembrane transport [GO:0006855] TISSUE SPECIFICITY: Ubiquitous in aerial organs (PubMed:12430018, PubMed:21628525). Higher expression levels in young, expanding tissues than in older tissues. Detected in the epidermal layer (PubMed:21628525). {ECO:0000269|PubMed:12430018, ECO:0000269|PubMed:21628525}. locus:2039523; AT2G26910 ABC transporter G family member ABC transporter G family member 31 (OsABCG31) (Pleiotropic drug resistance protein 6) (OsPDR6),Os01g0177900 protein (Fragment) Q8GU87,A0A0P0UYS6,A0A0P0UZ35 AB31G_ORYSJ,A0A0P0UYS6_ORYSJ,A0A0P0UZ35_ORYSJ ABCG31 PDR6 Os01g0177900 LOC_Os01g08260 P0013F10 P0509B06,Os01g0177900 OSNPB_010177900 FUNCTION: May be a general defense protein. {ECO:0000250}. ENOG411DST9 UVH3 Q9ATY5,A0A1I9LM68,A0A1I9LM67,A0A1I9LM66 UVH3_ARATH,A0A1I9LM68_ARATH,A0A1I9LM67_ARATH,A0A1I9LM66_ARATH DNA repair protein UVH3 (EC 3.1.-.-) (ERCC5 homolog) (RAD2 homolog) (AtRAD2) (AtUVH3) (AtXPG) (UV hypersensitive protein 3) (XPG homolog),5'-3' exonuclease family protein Early senescence; Sensitive to UV light and ionizing radiation-D. Mount-2001 FUNCTION: Putative single-stranded DNA endonuclease involved in nucleotide excision repair (NER) of UV- and oxidative damaged DNA. May make the 3'-incision step in NER. Seems to play a role in senescence program. {ECO:0000269|PubMed:11439121}. R-ATH-5696395;R-ATH-5696400;R-ATH-6782135; 3.1.-.- 165668,126587,148557,168870 DNA repair protein UVH3 (EC 3.1.-.-) (ERCC5 homolog) (RAD2 homolog) (AtRAD2) (AtUVH3) (AtXPG) (UV hypersensitive protein 3) (XPG homolog),5'-3' exonuclease family protein nucleus [GO:0005634]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697]; non-photoreactive DNA repair [GO:0010213]; nucleotide-excision repair [GO:0006289]; response to heat [GO:0009408],nucleus [GO:0005634]; DNA binding [GO:0003677]; exonuclease activity [GO:0004527]; DNA repair [GO:0006281],nucleus [GO:0005634]; endonuclease activity [GO:0004519]; exonuclease activity [GO:0004527]; single-stranded DNA binding [GO:0003697]; nucleotide-excision repair [GO:0006289] TISSUE SPECIFICITY: Expressed in all tissues at low levels. {ECO:0000269|PubMed:11439121}. locus:2091343; AT3G28030 DNA repair protein Os03g0205400 protein A0A0P0VUH8 A0A0P0VUH8_ORYSJ Os03g0205400 OSNPB_030205400 ENOG411DST8 MMN10.21 A0A1P8BBC7,A0A1P8BBD3,F4JXE8 A0A1P8BBC7_ARATH,A0A1P8BBD3_ARATH,F4JXE8_ARATH K-stimulated pyrophosphate-energized sodium pump protein 30165,35672,41776 K-stimulated pyrophosphate-energized sodium pump protein integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; nucleus [GO:0005634] locus:2168158; AT5G59960 NA Os01g0151600 protein (cDNA clone:001-115-E04, full insert sequence) Q5ZEJ4 Q5ZEJ4_ORYSJ Os01g0151600 OsJ_00397 OSNPB_010151600 P0009G03.21 ENOG411DSTE GNL2 F4K2K3 GNL2_ARATH ARF guanine-nucleotide exchange factor GNL2 (Protein GNOM-like 2) DISRUPTION PHENOTYPE: Failure of pollen germination. {ECO:0000269|PubMed:19686373}. The mutation did not affect pollen formation but resulted in the failure of pollen to germinate in vitro and in vivo. Complete male gametophyte defective-D. Ye-2009 FUNCTION: Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Essential for pollen germination. {ECO:0000269|PubMed:19686373}. R-ATH-421837;R-ATH-6807878;R-ATH-6811434; 156243 ARF guanine-nucleotide exchange factor GNL2 (Protein GNOM-like 2) cytosol [GO:0005829]; membrane [GO:0016020]; pollen tube [GO:0090406]; trans-Golgi network [GO:0005802]; ARF guanyl-nucleotide exchange factor activity [GO:0005086]; pollen germination [GO:0009846]; protein transport [GO:0015031]; regulation of ARF protein signal transduction [GO:0032012]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Preferentially expressed in mature pollen grains and growing pollen tubes. {ECO:0000269|PubMed:19686373}. locus:2183159; AT5G19610 pattern formation protein Os04g0117300 protein (Fragment),Os04g0117300 protein (cDNA clone:002-148-H09, full insert sequence),Os03g0704967 protein,Os03g0705033 protein Q0JFC1,B7F2T8,A0A0P0W2A3,A0A0P0W226 Q0JFC1_ORYSJ,B7F2T8_ORYSJ,A0A0P0W2A3_ORYSJ,A0A0P0W226_ORYSJ Os04g0117300 Os04g0117300 OSNPB_040117300,Os04g0117300 OSNPB_040117300,Os03g0704967 OSNPB_030704967,Os03g0705033 OSNPB_030705033 ENOG411DSTH T12K4_10 Q9FFZ2,Q9M2A8 PP402_ARATH,Q9M2A8_ARATH Putative pentatricopeptide repeat-containing protein At5g36300,Pentatricopeptide repeat (PPR) superfamily protein 38107,11057 Putative pentatricopeptide repeat-containing protein At5g36300,Pentatricopeptide repeat (PPR) superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451],integral component of membrane [GO:0016021] locus:2096474; AT5G36300,AT3G42560 Pentatricopeptide repeat-containing protein Os06g0710800 protein (Putative crp1 protein) (cDNA clone:001-117-C11, full insert sequence) Q5Z9G2 Q5Z9G2_ORYSJ Os06g0710800 OSNPB_060710800 P0655A07.30 ENOG411DSTV F4JFA0 F4JFA0_ARATH Thyroid adenoma-associated-like protein 240611 Thyroid adenoma-associated-like protein cytosol [GO:0005829] locus:2100671; AT3G55160 Putative death-receptor fusion protein (DUF2428) Os08g0169700 protein (Fragment) A0A0P0XCQ3 A0A0P0XCQ3_ORYSJ Os08g0169700 OSNPB_080169700 ENOG411EM32 LA2 Q0V7U7 LA2_ARATH La protein 2 (AtLa2) FUNCTION: Binds to the 3' poly(U) terminus of nascent RNA polymerase III transcripts, protecting them from exonuclease digestion and facilitating their folding and maturation. {ECO:0000250}. 44926 La protein 2 (AtLa2) intracellular ribonucleoprotein complex [GO:0030529]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; RNA binding [GO:0003723]; ncRNA processing [GO:0034470] TISSUE SPECIFICITY: Expressed ubiquitously (at protein level). {ECO:0000269|PubMed:17459889}. locus:2017809; AT1G79880 RNA binding motif NA NA NA NA NA NA NA ENOG411EABE NRAMP5 Q9SN36 NRAM5_ARATH Metal transporter Nramp5 (AtNramp5) FUNCTION: Seems to be involved in iron uptake. {ECO:0000250}. R-ATH-1222556;R-ATH-425410;R-ATH-6798695;R-ATH-6803544;R-ATH-917937; 58781 Metal transporter Nramp5 (AtNramp5) integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; ion transport [GO:0006811]; iron ion homeostasis [GO:0055072] locus:2124172; AT4G18790 Natural resistance-associated macrophage protein NA NA NA NA NA NA NA ENOG411EABG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C NA NA NA NA NA NA NA ENOG411EABM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EABN Q9LTJ0,Q9M150,C0SVU7 Q9LTJ0_ARATH,Q9M150_ARATH,C0SVU7_ARATH Transcription regulator-like (XH/XS domain-containing protein),Uncharacterized protein AT4g01180 (XH/XS domain-containing protein),Uncharacterized protein At5g59390 (XH/XS domain-containing protein) (Fragment) 65899,65465,65453 Transcription regulator-like (XH/XS domain-containing protein),Uncharacterized protein AT4g01180 (XH/XS domain-containing protein),Uncharacterized protein At5g59390 (XH/XS domain-containing protein) (Fragment) nucleolar ribonuclease P complex [GO:0005655]; gene silencing by RNA [GO:0031047],mitochondrion [GO:0005739]; nucleolar ribonuclease P complex [GO:0005655]; gene silencing by RNA [GO:0031047],gene silencing by RNA [GO:0031047] locus:2148323;,locus:2125078; AT5G59390,AT4G01180 XH XS domain-containing protein NA NA NA NA NA NA NA ENOG411EABH PLPZETA2 Q9M9W8 PLDZ2_ARATH Phospholipase D zeta 2 (PLDzeta2) (EC 3.1.4.4) (Phospholipase D p2) (AtPLDp2) (Phospholipase D2 PHOX and PX-containing domain protein) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions (PubMed:16384909). Shorter roots less sensitive to exogenous auxin (PubMed:17259265). Reduced gravitropism (PubMed:17259265). No effect on root hair patterning or root hair growth (PubMed:16384909). Defective in the hydrolysis of phospholipids, reduced capacity to accumulate galactolipids and premature change in root architecture in response to phosphate starvation (PubMed:16617110). Decreased accumulation of phosphatidic acid in roots under phosphate-limited conditions (PubMed:16384909). No effect on the concentration of phospholipids and galactolipids in phosphorus-starved roots (PubMed:16891548). Pldzeta1 and pldzeta2 double mutants show a smaller decrease in phosphatidylcholine and a smaller increase in digalactosyldiacylglycerol in phosphorus-starved roots (PubMed:16891548). Pldzeta1 and pldzeta2 double mutants show reduced primary root elongation and increased lateral root elongation under low-phosphate conditions (PubMed:16384909). {ECO:0000269|PubMed:16384909, ECO:0000269|PubMed:16617110, ECO:0000269|PubMed:16891548, ECO:0000269|PubMed:17259265}. Less sensitive to auxin. Reduced root gravitropism. Suppressed auxin-dependent hypocotyl elongation at 29C.,mutant is defective in the hydrolysis of phospholipids and has a reduced capacity to accumulate galactolipids under limiting Pi conditions. Morphological analysis of the pldz2 root system shows a premature change in root architecture in response to Pi starvation.,Under limited phosphate primary root elongation is retarded and lateral roots are longer with respect to wild type. Short roots with reduced gravitropism; Insensitive to auxin-H. Xue-2007 FUNCTION: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond to generate phosphatidic acids (PA). Phosphatidylcholine-selective (PubMed:11891260). Regulates vesicle trafficking and auxin responses (PubMed:17259265). Required for the normal cycling of PIN-2 containing vesicles (PubMed:17259265). Contributes to the supply of inorganic phosphorus for cell metabolism and diacylglycerol moieties for galactolipid synthesis in phosphorus-starved roots (PubMed:16891548, PubMed:16617110). Involved in root elongation during phosphate limitation (PubMed:16384909). {ECO:0000269|PubMed:11891260, ECO:0000269|PubMed:16384909, ECO:0000269|PubMed:16617110, ECO:0000269|PubMed:16891548, ECO:0000269|PubMed:17259265}. ARA:AT3G05630-MONOMER; R-ATH-1483166;R-ATH-2029485;R-ATH-6798695; 3.1.4.4; 3.1.4.4 118810 Phospholipase D zeta 2 (PLDzeta2) (EC 3.1.4.4) (Phospholipase D p2) (AtPLDp2) (Phospholipase D2 PHOX and PX-containing domain protein) vacuole [GO:0005773]; N-acylphosphatidylethanolamine-specific phospholipase D activity [GO:0070290]; phosphatidylinositol binding [GO:0035091]; phospholipase D activity [GO:0004630]; cellular response to nitrogen starvation [GO:0006995]; cellular response to phosphate starvation [GO:0016036]; galactolipid biosynthetic process [GO:0019375]; phospholipid catabolic process [GO:0009395]; regulation of vesicle-mediated transport [GO:0060627]; response to auxin [GO:0009733]; root development [GO:0048364] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems and flowers (PubMed:17259265, PubMed:16384909). Highest expression in roots (PubMed:16384909). Detected only in the meristematic regions up to 4 days after germination and then at later stages in all tissues (PubMed:16617110). {ECO:0000269|PubMed:16384909, ECO:0000269|PubMed:16617110, ECO:0000269|PubMed:17259265}. locus:2078037; AT3G05630 phospholipase d NA NA NA NA NA NA NA ENOG411EABI GATA4 O49743 GATA4_ARATH GATA transcription factor 4 (AtGATA-4) FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. 26467 GATA transcription factor 4 (AtGATA-4) nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Expressed in roots, flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}. locus:2103346; AT3G60530 ZnF_GATA NA NA NA NA NA NA NA ENOG411EABU TRM24 Q9FLH6,A0A1P8BGA2 Q9FLH6_ARATH,A0A1P8BGA2_ARATH At5g51850 (Emb|CAB81354.1),Uncharacterized protein 66644,60089 At5g51850 (Emb|CAB81354.1),Uncharacterized protein locus:2165381; AT5G51850 NA NA NA NA NA NA NA NA ENOG411EABP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein NA NA NA NA NA NA NA ENOG411EAB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OSJNBa0094O15.7 protein (Os04g0103900 protein) (cDNA clone:J023145I15, full insert sequence) Q7XMR1 Q7XMR1_ORYSJ Os04g0103900 Os04g0103900 OSJNBa0094O15.7 OSNPB_040103900 ENOG411EAB5 F4IZV1,Q3EBA4 F4IZV1_ARATH,Q3EBA4_ARATH Concanavalin A-like lectin family protein 38416,37407 Concanavalin A-like lectin family protein integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246]; photoperiodism, flowering [GO:0048573],integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246] locus:2095319;,locus:504955733; AT3G09190,AT3G09035 Legume lectin domain NA NA NA NA NA NA NA ENOG411EAB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os11g0610000 protein (Fragment) A0A0P0Y4D8 A0A0P0Y4D8_ORYSJ Os11g0610000 OSNPB_110610000 ENOG411EAB0 DEGP7,DEG7 Q8RY22,A0A1I9LPZ9,F4J131 DEGP7_ARATH,A0A1I9LPZ9_ARATH,F4J131_ARATH Protease Do-like 7 (EC 3.4.21.-),DegP protease 7,Uncharacterized protein FUNCTION: Probable serine protease. 3.4.21.- 119877,116291,22897 Protease Do-like 7 (EC 3.4.21.-),DegP protease 7,Uncharacterized protein chloroplast [GO:0009507]; cytosol [GO:0005829]; peptidase activity [GO:0008233]; serine-type endopeptidase activity [GO:0004252]; photoinhibition [GO:0010205],serine-type endopeptidase activity [GO:0004252] locus:2099619; AT3G03380,AT3G03370 Inherit from KOG: Nuclear serine protease which mediates apoptosis (By similarity) NA NA NA NA NA NA NA ENOG411EAB2 MPF21.5,MPF21.4,MPF21.7 Q9FGA7,Q9FGA8,Q9FGA5 Q9FGA7_ARATH,Q9FGA8_ARATH,Q9FGA5_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein (Similarity to pollen-specific protein Bnm1),At5g50030 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Similarity to pollen-specific protein Bnm1) (Uncharacterized protein At5g50030/MPF21_4) 18268,20056,18226 Plant invertase/pectin methylesterase inhibitor superfamily protein (Similarity to pollen-specific protein Bnm1),At5g50030 (Plant invertase/pectin methylesterase inhibitor superfamily protein) (Similarity to pollen-specific protein Bnm1) (Uncharacterized protein At5g50030/MPF21_4) enzyme inhibitor activity [GO:0004857] locus:2170066;,locus:2170056;,locus:2170086; AT5G50040,AT5G50030,AT5G50060 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EAB3 PRK1,PRK2 C0LGU0,Q84JQ4 PRK1_ARATH,PRK2_ARATH Pollen receptor-like kinase 1 (AtPRK1) (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase RLK),Pollen receptor-like kinase 2 (AtPRK2) (EC 2.7.11.1) DISRUPTION PHENOTYPE: No effect on pollen germination and growth. Prk1 and prk2 double mutant has no effect on pollen germination and growth. Prk1, prk2 and prk5 triple mutant shows reduced pollen tube elongation. {ECO:0000269|PubMed:23024212}.,DISRUPTION PHENOTYPE: No effect on pollen germination and growth. Prk1 and prk2 or prk2 and prk5 double mutants have no effect on pollen germination and growth. Prk1, prk2 and prk5 triple mutant shows reduced pollen tube elongation. {ECO:0000269|PubMed:23024212}. FUNCTION: Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth (PubMed:23024212). {ECO:0000269|PubMed:23024212}.,FUNCTION: Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth (PubMed:23024212, PubMed:24136420). Phosphorylates ROPGEF1 in its C-terminal region, releasing its auto-inhibition, and thereby activating the ROP1 signaling pathway (PubMed:23024212). May act as a scaffolding protein, recruiting ROPGEF12 to the plasma membrane by binding to its C-terminal domain (PubMed:18000057). Phosphorylates ROPGEF12, releasing its auto-inhibition (PubMed:18000057). {ECO:0000269|PubMed:18000057, ECO:0000269|PubMed:23024212, ECO:0000269|PubMed:24136420}. 2.7.11.1 73483,72522 Pollen receptor-like kinase 1 (AtPRK1) (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase RLK),Pollen receptor-like kinase 2 (AtPRK2) (EC 2.7.11.1) apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; regulation of pollen tube growth [GO:0080092] TISSUE SPECIFICITY: Expressed in pollen and/or in flowers, but not in leaves. {ECO:0000269|PubMed:12139002}.,TISSUE SPECIFICITY: Expressed in pollen and/or in flowers, but not in leaves (PubMed:12139002). Expressed in pollen tube (PubMed:18000057). {ECO:0000269|PubMed:12139002, ECO:0000269|PubMed:18000057}. locus:2182623;,locus:2063621; AT5G35390,AT2G07040 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EAB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XPC-binding domain Probable ubiquitin receptor RAD23 (OsRAD23) (Probable DNA repair protein RAD23),Os08g0430200 protein (Putative osRAD23) (cDNA clone:J013000J24, full insert sequence),Os02g0465000 protein,Os08g0430200 protein (Fragment),Os09g0407200 protein (Fragment) Q40742,Q6ZKC1,A0A0P0VIT9,A0A0P0XG93,A0A0P0XMG1 RAD23_ORYSJ,Q6ZKC1_ORYSJ,A0A0P0VIT9_ORYSJ,A0A0P0XG93_ORYSJ,A0A0P0XMG1_ORYSJ RAD23 Os09g0407200 LOC_Os09g24200 OJ1261_A08.49 OsJ_29306 P0465E03.1,Os08g0430200 Os08g0430200 OJ1124_B05.4 OsJ_27402 OSNPB_080430200,Os02g0465000 OSNPB_020465000,Os08g0430200 OSNPB_080430200,Os09g0407200 OSNPB_090407200 FUNCTION: May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP) (By similarity). {ECO:0000250}. ENOG411EAB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RmlD substrate binding domain NA NA NA NA NA NA NA ENOG411EMCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) NA NA NA NA NA NA NA ENOG411DQSH T26I12.220 Q9M3B8 Q9M3B8_ARATH Phragmoplastin interacting protein 1 (Uncharacterized protein T26I12.220) 65997 Phragmoplastin interacting protein 1 (Uncharacterized protein T26I12.220) extrinsic component of membrane [GO:0019898]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; cell plate formation involved in plant-type cell wall biogenesis [GO:0009920] locus:2100696; AT3G55340 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os05g0114500 protein A0A0P0WH49 A0A0P0WH49_ORYSJ Os05g0114500 OSNPB_050114500 ENOG411DQSI RPS5B,RPS5A P51427,Q9ZUT9 RS52_ARATH,RS51_ARATH 40S ribosomal protein S5-2,40S ribosomal protein S5-1 Male and female gametophyte defective; Embryo defective-R. Offringa-2001 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 22921,22991 40S ribosomal protein S5-2,40S ribosomal protein S5-1 cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cytokinin [GO:0009735]; ribosomal small subunit assembly [GO:0000028]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2081546;,locus:2049862; AT3G11940,AT2G37270 40S ribosomal protein 40S ribosomal protein S5, putative, expressed (Os11g0482000 protein) (cDNA clone:001-013-A08, full insert sequence) (cDNA clone:001-029-G10, full insert sequence),Os01g0100700 protein (Putative 40S ribosomal protein S5) (cDNA clone:006-206-E02, full insert sequence) (cDNA clone:J033028P14, full insert sequence) Q2R4A1,Q93VC6 Q2R4A1_ORYSJ,Q93VC6_ORYSJ Os11g0482000 LOC_Os11g29190 Os11g0482000 OsJ_33893 OSNPB_110482000,P0402A09.2 Os01g0100700 OsJ_00007 OSJNOa264G09.6 OSNPB_010100700 P0672D08.6 ENOG411DQSJ F4KFG1,F4KFG2 F4KFG1_ARATH,F4KFG2_ARATH Probable ribosome biogenesis protein At5g10070 FUNCTION: Probable pre-rRNA processing protein involved in ribosome biogenesis. {ECO:0000256|HAMAP-Rule:MF_03146}. 20475,29745 Probable ribosome biogenesis protein At5g10070 rRNA processing [GO:0006364],cytosol [GO:0005829]; nucleus [GO:0005634]; maturation of SSU-rRNA [GO:0030490] locus:2184128; AT5G10070 pre-rRNA processing protein involved in ribosome biogenesis (By similarity) Probable ribosome biogenesis protein LOC_Os03g09920 Q10QI6 Q10QI6_ORYSJ Os03g0195200 LOC_Os03g09920 Os03g0195200 OsJ_09762 OSNPB_030195200 FUNCTION: Probable pre-rRNA processing protein involved in ribosome biogenesis. {ECO:0000256|HAMAP-Rule:MF_03146}. ENOG411DQSK RPL6A,RPL6B,RPL6C Q9FZ76,Q9C9C6,Q9C9C5 RL61_ARATH,RL62_ARATH,RL63_ARATH 60S ribosomal protein L6-1,60S ribosomal protein L6-2,60S ribosomal protein L6-3 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 26153,26009,26107 60S ribosomal protein L6-1,60S ribosomal protein L6-2,60S ribosomal protein L6-3 chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; response to cytokinin [GO:0009735]; ribosomal large subunit assembly [GO:0000027],cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027] locus:2027483;,locus:2031561;,locus:2031576; AT1G18540,AT1G74060,AT1G74050 60S ribosomal protein 60S ribosomal protein L6 Q6YY64,Q7XR19 Q6YY64_ORYSJ,Q7XR19_ORYSJ Os02g0591700 Os02g0591700 OsJ_07332 OSJNBa0006O15.44 OSJNBa0016G10.4 OSNPB_020591700,Os04g0473400 Os04g0473400 OSJNBb0022F23.11 OSNPB_040473400 ENOG411DQSM ZIP11,ZIP2 Q94EG9,Q9LTH9 ZIP11_ARATH,ZIP2_ARATH Zinc transporter 11 (ZRT/IRT-like protein 11),Zinc transporter 2 (ZRT/IRT-like protein 2) FUNCTION: Probably mediates zinc uptake from the rhizosphere. {ECO:0000250}.,FUNCTION: Mediates zinc uptake. May also transport copper and cadmium ions. {ECO:0000269|PubMed:9618566}. MISCELLANEOUS: Zinc uptake is highly pH-dependent and no uptake is seen at pH levels below 5.0. Inhibited by copper and cadmium ions. R-ATH-442380; 35461,38313 Zinc transporter 11 (ZRT/IRT-like protein 11),Zinc transporter 2 (ZRT/IRT-like protein 2) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; zinc ion transmembrane transporter activity [GO:0005385]; zinc II ion transmembrane transport [GO:0071577],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion transmembrane transporter activity [GO:0046873]; zinc II ion transport [GO:0006829] locus:2012020;,locus:2148398; AT1G55910,AT5G59520 zinc transporter Zinc transporter 1 (ZRT/IRT-like protein 1) (OsZIP1),Zinc transporter 2 (ZRT/IRT-like protein 2) (OsZIP2),Os08g0533900 protein Q94DG6,Q852F6,A0A0P0XIT6 ZIP1_ORYSJ,ZIP2_ORYSJ,A0A0P0XIT6_ORYSJ ZIP1 Os01g0972200 LOC_Os01g74110 P0518C01.26,ZIP2 Os03g0411800 LOC_Os03g29850,Os08g0533900 OSNPB_080533900 FUNCTION: Zinc transporter that may mediate zinc uptake from the rhizosphere. May also transport other divalent cations. {ECO:0000269|PubMed:12970480}.,FUNCTION: Zinc transporter that may be involved in zinc uptake from the rhizosphere. {ECO:0000250}. ENOG411DQSN PUB34,PUB53,PUB52,PUB35,MWD22.22 Q8S8S7,Q9LU47,Q9FKG6,Q9SW11,A0A1P8BCC9,A0A1P8AY00,F4K964,F4K3J3,A0A1P8AXV0 PUB34_ARATH,PUB53_ARATH,PUB52_ARATH,PUB35_ARATH,A0A1P8BCC9_ARATH,A0A1P8AY00_ARATH,F4K964_ARATH,F4K3J3_ARATH,A0A1P8AXV0_ARATH U-box domain-containing protein 34 (Plant U-box protein 34) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],Putative U-box domain-containing protein 53 (Plant U-box protein 53) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein 52 (Plant U-box protein 52) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein 35 (Plant U-box protein 35) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein kinase family protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27; 2.7.11.- 90914,91821,94632,93754,90172,92888,88875,96459,89225 U-box domain-containing protein 34 (Plant U-box protein 34) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],Putative U-box domain-containing protein 53 (Plant U-box protein 53) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein 52 (Plant U-box protein 52) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein 35 (Plant U-box protein 35) [Includes: E3 ubiquitin ligase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase); Serine/threonine-protein kinase (EC 2.7.11.-)],U-box domain-containing protein kinase family protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin-protein transferase activity [GO:0004842],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; ubiquitin-protein transferase activity [GO:0004842]; response to stress [GO:0006950],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ubiquitin-protein transferase activity [GO:0004842]; response to stress [GO:0006950],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ubiquitin-protein transferase activity [GO:0004842] locus:2047605;,locus:2176177;,locus:2117343;,locus:504954932;,locus:2151636; AT2G19410,AT5G51270,AT5G61550,AT4G25160,AT5G57035 U-box domain-containing protein Os10g0561500 protein (U-box domain containing protein, expressed),Os06g0574200 protein (S-receptor kinase-like),Os06g0140800 protein (cDNA clone:J013037K06, full insert sequence),Os03g0101200 protein,Os02g0218600 protein,Os06g0140800 protein (Fragment) Q336S5,Q5Z7K5,Q0DEQ5,A0A0P0VS27,A0A0P0VGG2,A0A0P0WSJ2 Q336S5_ORYSJ,Q5Z7K5_ORYSJ,Q0DEQ5_ORYSJ,A0A0P0VS27_ORYSJ,A0A0P0VGG2_ORYSJ,A0A0P0WSJ2_ORYSJ OSJNBb0089A17.2 LOC_Os10g41220 Os10g0561500 OsJ_32463 OSNPB_100561500,Os06g0574200 OSJNBa0006A22.37 OSNPB_060574200,Os06g0140800 Os06g0140800 OsJ_20070 OSNPB_060140800,Os03g0101200 OSNPB_030101200,Os02g0218600 OSNPB_020218600,Os06g0140800 OSNPB_060140800 ENOG411DQSA MOK9.21 F4IUH2,A0A1P8BB75,F4JZV9 F4IUH2_ARATH,A0A1P8BB75_ARATH,F4JZV9_ARATH DENN (AEX-3) domain-containing protein 115634,82468,85115 DENN (AEX-3) domain-containing protein locus:2038962;,locus:2169548; AT2G20320,AT5G35560 DENN domain containing protein Os02g0777100 protein,DENN (AEX-3) domain-containing protein-like (Os02g0777100 protein) (cDNA clone:J013100G23, full insert sequence),DENN domain containing protein, expressed (Os03g0145500 protein) (cDNA clone:J013074H13, full insert sequence),Os02g0777100 protein (Fragment) Q6ZGD0,Q6ZGD1,Q10RU8,A0A0P0VQI7,A0A0P0VQF7 Q6ZGD0_ORYSJ,Q6ZGD1_ORYSJ,Q10RU8_ORYSJ,A0A0P0VQI7_ORYSJ,A0A0P0VQF7_ORYSJ OJ1534_E09.9-2 Os02g0777100 OSNPB_020777100,Os02g0777100 OJ1534_E09.9-1 OSNPB_020777100,Os03g0145500 LOC_Os03g05200 Os03g0145500 OSNPB_030145500,Os02g0777100 OSNPB_020777100 ENOG411DQSC Q9ZQI9 Q9ZQI9_ARATH Expressed protein (Polymerase/histidinol phosphatase-like protein) 47838 Expressed protein (Polymerase/histidinol phosphatase-like protein) catalytic activity [GO:0003824] locus:2043738; AT2G13840 PHP domain Os03g0192000 protein (PHP domain C-terminal region family protein, expressed) Q10QM0 Q10QM0_ORYSJ LOC_Os03g09180 Os03g0192000 OsJ_09734 OSNPB_030192000 ENOG411DQSD PRK4,PRK5 Q9LJY0,Q9LPT1,C0LGR9,A0A1I9LQQ2 PRK4_ARATH,PRK5_ARATH,Y4312_ARATH,A0A1I9LQQ2_ARATH Pollen receptor-like kinase 4 (AtPRK4) (EC 2.7.11.1),Pollen receptor-like kinase 5 (AtPRK5) (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At4g31250 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein DISRUPTION PHENOTYPE: No effect on pollen germination and growth. Prk2 and prk5 double mutant has no effect on pollen germination and growth. Prk1, prk2 and prk5 triple mutant shows reduced pollen tube elongation. {ECO:0000269|PubMed:23024212}. FUNCTION: Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth (PubMed:23024212). Can phosphorylate ROPGEF1 in vitro (PubMed:23024212). {ECO:0000269|PubMed:23024212}.,FUNCTION: Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth (PubMed:23024212). The extracellular domain serves as a sensor for peptides derived from GRI (PubMed:25398910). May act as a downstream element for ROS-dependent cell death induced by GRI (PubMed:25398910). {ECO:0000269|PubMed:23024212, ECO:0000269|PubMed:25398910}. 2.7.11.1 76102,76861,75235,55510 Pollen receptor-like kinase 4 (AtPRK4) (EC 2.7.11.1),Pollen receptor-like kinase 5 (AtPRK5) (EC 2.7.11.1),Probable LRR receptor-like serine/threonine-protein kinase At4g31250 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; regulation of pollen tube growth [GO:0080092],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; regulation of pollen tube growth [GO:0080092],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Expressed in pollen and/or in flowers, but not in leaves. {ECO:0000269|PubMed:12139002}.,TISSUE SPECIFICITY: Expressed in pollen and/or in flowers (PubMed:12139002). Detected at low levels in leaves (PubMed:25398910). {ECO:0000269|PubMed:12139002, ECO:0000269|PubMed:25398910}. locus:2087595;,locus:2008061;,locus:2128156; AT3G20190,AT1G50610,AT4G31250 LRR receptor-like serine threonine-protein kinase Os08g0521200 protein (Putative receptor-like protein kinase) Q7F1K6 Q7F1K6_ORYSJ OJ1081_B12.103 Os08g0521200 OJ1003_A09.32 OSNPB_080521200 ENOG411DQSE MOB1B,MOB2A,MOB1A,MOB2B Q8GYX0,F4K495,Q9FHI1,F4K494 MOB1B_ARATH,MOB2A_ARATH,MOB1A_ARATH,MOB2B_ARATH MOB kinase activator-like 1B (Mob1 homolog 1B) (Mps one binder kinase activator-like 1B),MOB kinase activator-like 2A (Mob1 homolog 2A) (Mps one binder kinase activator-like 2A),MOB kinase activator-like 1A (Mob1 homolog 1A) (Mps one binder kinase activator-like 1A),Putative MOB kinase activator-like 2B (Mob1 homolog 2B) (Mps one binder kinase activator-like 2B) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:24201137}.,DISRUPTION PHENOTYPE: Exhibits severe defects in the growth of vegetative organs and in seed setting capacity: displays a reduction in the rosette size and number of leaves, a reduction of siliques size with high proportion of aborted ovules, a short root length with reduction of the meristem size, of the number of cortical cells and of the size of the elongation zone with root tips showing a distorted cellular pattern. Also exhibits a higher sensitivity to abscissic acid (ABA). {ECO:0000269|PubMed:24201137}. FUNCTION: Plays a key role in regulation of cell expansion and cell division. Required for proper plant development, the correct patterning of the root meristem and the control of root growth (PubMed:24201137). Involved in both sporogenesis and gametogenesis (PubMed:21641974). {ECO:0000269|PubMed:21641974, ECO:0000269|PubMed:24201137}. MISCELLANEOUS: RNAi plants show a reduced radial expansion of the inflorescence stem, a reduced elongation zone of the primary root, defects during sporogenesis and gametogenesis, and a reduced fertility. {ECO:0000269|PubMed:21641974}. 24668,25235,24696,14643 MOB kinase activator-like 1B (Mob1 homolog 1B) (Mps one binder kinase activator-like 1B),MOB kinase activator-like 2A (Mob1 homolog 2A) (Mps one binder kinase activator-like 2A),MOB kinase activator-like 1A (Mob1 homolog 1A) (Mps one binder kinase activator-like 1A),Putative MOB kinase activator-like 2B (Mob1 homolog 2B) (Mps one binder kinase activator-like 2B) metal ion binding [GO:0046872],nucleus [GO:0005634]; metal ion binding [GO:0046872],cytoplasm [GO:0005737]; early endosome [GO:0005769]; nucleus [GO:0005634]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; metal ion binding [GO:0046872]; cell division [GO:0051301]; cell growth [GO:0016049]; cell proliferation [GO:0008283]; embryo sac development [GO:0009553]; gametophyte development [GO:0048229]; megasporogenesis [GO:0009554]; microsporogenesis [GO:0009556]; root development [GO:0048364]; root meristem growth [GO:0010449],cytoskeleton [GO:0005856]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expression is detected along the vasculature in cotyledons, hypocotyls and roots of 3- to 4-day-old seedlings. {ECO:0000269|PubMed:24201137}.,TISSUE SPECIFICITY: Constitutively expressed (PubMed:21641974). In 3- to 4-day-old seedlings, expression is high in the shoot apical meristem and along the vasculature in cotyledons, hypocotyls and roots. At the root tip, expression is detected in columella and lateral root cap cells as well as in the stem cell niche around the quiescent center (QC). The levels of expression decrease progressively in the meristematic zone from the root tip towards the base of the root, becoming stronger again in the elongation zone. In flowers, expression appears localized in ovules and pollen (PubMed:24201137). {ECO:0000269|PubMed:21641974, ECO:0000269|PubMed:24201137}. locus:5019474836;,locus:2149882;,locus:2163533;,locus:2149872; AT4G19045,AT5G20440,AT5G45550,AT5G20430 Mps one binder kinase activator-like Mps one binder kinase activator-like 1A, putative, expressed (Os03g0577200 protein) (Putative Mob1-like protein) (cDNA clone:001-038-D08, full insert sequence) (cDNA clone:006-305-C06, full insert sequence) (cDNA clone:J013034B14, full insert sequence) (cDNA clone:J013058M06, full insert sequence),Os08g0163200 protein (Fragment) Q75G93,A0A0N7KPB6 Q75G93_ORYSJ,A0A0N7KPB6_ORYSJ Os03g0577200 LOC_Os03g38020 Os03g0577200 OsJ_11526 OSJNBa0008D12.2 OSNPB_030577200,Os08g0163200 OSNPB_080163200 ENOG411DQSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxilin-related protein NA NA NA NA NA NA NA ENOG411DQSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os10g0445400 protein (RNA-binding protein, putative, expressed) (cDNA clone:J013093E22, full insert sequence) Q337S3 Q337S3_ORYSJ Os10g0445400 LOC_Os10g30850 Os10g0445400 OSNPB_100445400 ENOG411DQSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: E2F transcription factor Os04g0112200 protein A0A0P0W616 A0A0P0W616_ORYSJ Os04g0112200 OSNPB_040112200 ENOG411DQSY ARI3,ARI2,ARI1,ARI4 Q9LVX0,Q84RR2,Q949V6,Q9LVW9,A0A1P8AYS5,A0A1P8AYL6,A0A1P8AYL7,A0A1P8AYS1,F4JKP2 ARI3_ARATH,ARI2_ARATH,ARI1_ARATH,ARI4_ARATH,A0A1P8AYS5_ARATH,A0A1P8AYL6_ARATH,A0A1P8AYL7_ARATH,A0A1P8AYS1_ARATH,F4JKP2_ARATH Probable E3 ubiquitin-protein ligase ARI3 (EC 2.3.2.-) (ARIADNE-like protein ARI3) (Protein ariadne homolog 3) (RING-type E3 ubiquitin transferase ARI3),Probable E3 ubiquitin-protein ligase ARI2 (EC 2.3.2.-) (ARIADNE-like protein ARI2) (Protein ariadne homolog 2) (RING-type E3 ubiquitin transferase ARI2),Probable E3 ubiquitin-protein ligase ARI1 (EC 2.3.2.-) (ARIADNE-like protein ARI1) (Protein ariadne homolog 1) (RING-type E3 ubiquitin transferase ARI1),Putative E3 ubiquitin-protein ligase ARI4 (EC 2.3.2.-) (ARIADNE-like protein ARI4) (Protein ariadne homolog 4) (RING-type E3 ubiquitin transferase ARI4),RING/U-box superfamily protein FUNCTION: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. {ECO:0000250, ECO:0000269|PubMed:12446796}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.- 62154,67799,68789,61626,67222,62580,55828,61048,49645 Probable E3 ubiquitin-protein ligase ARI3 (EC 2.3.2.-) (ARIADNE-like protein ARI3) (Protein ariadne homolog 3) (RING-type E3 ubiquitin transferase ARI3),Probable E3 ubiquitin-protein ligase ARI2 (EC 2.3.2.-) (ARIADNE-like protein ARI2) (Protein ariadne homolog 2) (RING-type E3 ubiquitin transferase ARI2),Probable E3 ubiquitin-protein ligase ARI1 (EC 2.3.2.-) (ARIADNE-like protein ARI1) (Protein ariadne homolog 1) (RING-type E3 ubiquitin transferase ARI1),Putative E3 ubiquitin-protein ligase ARI4 (EC 2.3.2.-) (ARIADNE-like protein ARI4) (Protein ariadne homolog 4) (RING-type E3 ubiquitin transferase ARI4),RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12529512}. locus:2089104;,locus:2052920;,locus:2116184; AT3G27710,AT2G16090,AT4G34370,AT3G27720 E3 ubiquitin-protein ligase RBR-type E3 ubiquitin transferase (EC 2.3.2.31) Q10PH9 Q10PH9_ORYSJ Os03g0233500 LOC_Os03g13100 Os03g0233500 OsJ_10043 OSNPB_030233500 ENOG411DQSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA actin cytoskeleton organization Formin-like protein 18 (OsFH18),Formin-like protein 11 (OsFH11),Formin-like protein (Fragment),Formin-like protein Q6MWG9,Q0D5P3,A0A0N7KNM1,A0A0P0W653 FH18_ORYSJ,FH11_ORYSJ,A0A0N7KNM1_ORYSJ,A0A0P0W653_ORYSJ FH18 Os04g0100300 LOC_Os04g01070 B1160F02.7,FH11 Os07g0545500 LOC_Os07g36150,Os07g0545500 OSNPB_070545500,Os04g0100300 OSNPB_040100300 ENOG411DQSP RPS6A,RPS6B,RPS6,EMB3010 O48549,P51430,A8MS03,F4KGU2 RS61_ARATH,RS62_ARATH,A8MS03_ARATH,F4KGU2_ARATH 40S ribosomal protein S6-1,40S ribosomal protein S6-2 (Protein EMBRYO DEFECTIVE 3010),Ribosomal protein S6,Ribosomal protein S6e Slightly delayed growth; Small leaves-T. Desnos-2010 FUNCTION: May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA. {ECO:0000250}. R-ATH-156827;R-ATH-166208;R-ATH-1799339;R-ATH-6791226;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 28367,28162,21394,22097 40S ribosomal protein S6-1,40S ribosomal protein S6-2 (Protein EMBRYO DEFECTIVE 3010),Ribosomal protein S6,Ribosomal protein S6e chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal small subunit biogenesis [GO:0042274]; ribosome assembly [GO:0042255]; rRNA processing [GO:0006364]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cytokinin [GO:0009735]; ribosomal small subunit biogenesis [GO:0042274]; ribosome assembly [GO:0042255]; rRNA processing [GO:0006364]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2124854;,locus:2142464; AT4G31700,AT5G10360 40S ribosomal protein S6 40S ribosomal protein S6 Q8LH97,Q75LR5 Q8LH97_ORYSJ,Q75LR5_ORYSJ P0594D10.135 Os07g0622100 OsJ_25168 OSNPB_070622100,Os03g0390000 LOC_Os03g27260 Os03g0390000 OsJ_11113 OSJNBa0017N12.10 OSNPB_030390000 ENOG411DQSQ CRWN3,CRWN1 Q9CA42,F4HRT5 CRWN3_ARATH,CRWN1_ARATH Protein CROWDED NUCLEI 3 (Protein LITTLE NUCLEI 3),Protein CROWDED NUCLEI 1 (Protein KAKU2) (Protein LITTLE NUCLEI 1) DISRUPTION PHENOTYPE: Altered nuclear morphology. Plants lacking both CRWN1 and CRWN3 exhibit markedly smaller rosettes. Plants lacking CRWN1, CRWN3 and CRWN4 are extremely stunted and set few seed. {ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514}.,DISRUPTION PHENOTYPE: Reduced nuclear size and altered nuclear morphology. In plants lacking both CRWN1 and CRWN2, moderate dwarf and leaf-curling phenotype associated with endoreplication and strongly reduced nuclear size. Plants lacking both CRWN1 and CRWN4 exhibit slightly smaller rosettes. Plants lacking both CRWN1 and CRWN2 or both CRWN1 and CRWN3 exhibit markedly smaller rosettes. Plants lacking CRWN1, CRWN2 and CRWN4 or CRWN1, CRWN3 and CRWN4 are extremely stunted and set few seed. {ECO:0000269|PubMed:17873096, ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514, ECO:0000269|PubMed:24824484}. Nuclei are significantly smaller than wild-type nuclei.,Epidermal cells are approximately one-fourth the size of wild-type epidermal cells. Whole plant is dwarfed with respect to wild-type and single mutant siblings in segregating F2 family. Spindle-shaped nuclei are almost entirely absent. Number of chromocenters in double mutant nuclei is half that of wild type nuclei. Nuclear DNA packaging density is increased with respect to wild type. Small nuclei with abnormal morphology-E. Richards-2007 FUNCTION: Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity). Required for nucleus structure organization (e.g. size and shape) (PubMed:24308514, PubMed:23396599). {ECO:0000250|UniProtKB:Q6ZWR6, ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514}.,FUNCTION: Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity). Required for nucleus structure organization (e.g. size and shape) (PubMed:17873096, PubMed:24308514, PubMed:23396599, PubMed:24824484). {ECO:0000250|UniProtKB:Q6ZWR6, ECO:0000269|PubMed:17873096, ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514, ECO:0000269|PubMed:24824484}. 127204,129093 Protein CROWDED NUCLEI 3 (Protein LITTLE NUCLEI 3),Protein CROWDED NUCLEI 1 (Protein KAKU2) (Protein LITTLE NUCLEI 1) cytoplasm [GO:0005737]; nuclear lamina [GO:0005652]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; plasmodesma [GO:0009506]; nucleus organization [GO:0006997],cytoplasmic chromatin [GO:0000789]; cytosol [GO:0005829]; nuclear envelope [GO:0005635]; nuclear lamina [GO:0005652]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; nucleus organization [GO:0006997]; regulation of nucleus size [GO:0097298] TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, flowers and flower stalks. {ECO:0000269|PubMed:23396599}. locus:2012423;,locus:2019529; AT1G68790,AT1G67230 Nuclear matrix constituent protein Os02g0710102 protein (Fragment),Os02g0709900 protein (Fragment) A0A0P0VNV1,A0A0P0VNU0 A0A0P0VNV1_ORYSJ,A0A0P0VNU0_ORYSJ Os02g0710102 OSNPB_020710102,Os02g0709900 OSNPB_020709900 ENOG411DQSR PTEN2A Q9LT75 PTN2A_ARATH Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A (EC 3.1.3.48) (EC 3.1.3.67) (Protein PHOSPHATASE AND TENSIN HOMOLOG 2-a) (AtPTEN2) (AtPTEN2a) FUNCTION: Binds phosphatidic acid. Protein tyrosine phosphatase that exhibits also lipid phosphatase activity. Hydrolyzed poorly p-nitrophenyl phosphate (p-NPP). Can use PtdIns isomers as substrates. Removes efficiently phosphate from the D3 position of the inositol ring, less from the D4 position and not at all from the D5 position on monophosphorylated PtdIns isomers (PIPs). The presence of a phosphate group in the D5 position on PIP(2) isomers reduces lipid phosphatase activity. Mostly active on PtdIns(3)P and PtdIns(3,4)P(2), to a lower extent, on PtdIns(4)P and PtdIns(3,5)P(2), but barely against PtdIns(3,4,5)P(3) as substrate. {ECO:0000269|PubMed:21864294}. ARA:AT3G19420-MONOMER; 3.1.3.48; 3.1.3.67 66430 Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A (EC 3.1.3.48) (EC 3.1.3.67) (Protein PHOSPHATASE AND TENSIN HOMOLOG 2-a) (AtPTEN2) (AtPTEN2a) cytosol [GO:0005829]; phosphatidic acid binding [GO:0070300]; phosphatidylinositol phosphate phosphatase activity [GO:0052866]; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity [GO:0016314]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; peptidyl-tyrosine dephosphorylation [GO:0035335]; phosphatidylinositol dephosphorylation [GO:0046856]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques. However, at protein level, not observed in older leaves and mature siliques. {ECO:0000269|PubMed:21864294}. locus:2090659; AT3G19420 C2 domain of PTEN tumour-suppressor protein Os12g0407500 protein (PTEN, putative, expressed) (cDNA clone:J023079D17, full insert sequence),Os12g0407200 protein (Fragment),Os12g0407500 protein (Fragment) Q2QT46,Q0INR4,A0A0P0Y9G9 Q2QT46_ORYSJ,Q0INR4_ORYSJ,A0A0P0Y9G9_ORYSJ Os12g0407500 LOC_Os12g21890 Os12g0407500 OSNPB_120407500,Os12g0407200 Os12g0407200 OSNPB_120407200,Os12g0407500 OSNPB_120407500 ENOG411DQSS GAUT7 Q9ZVI7,A0A1P8AX74 GAUT7_ARATH,A0A1P8AX74_ARATH Probable galacturonosyltransferase 7 (EC 2.4.1.-) (Like glycosyl transferase 7),Hexosyltransferase (EC 2.4.1.-) FUNCTION: May be involved in pectin biosynthesis. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin biosynthesis.,PATHWAY: Glycan metabolism; pectin biosynthesis. {ECO:0000256|RuleBase:RU362027}. 2.4.1.43; 2.4.1.- 69749,60121 Probable galacturonosyltransferase 7 (EC 2.4.1.-) (Like glycosyl transferase 7),Hexosyltransferase (EC 2.4.1.-) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489] TISSUE SPECIFICITY: Expressed in roots, inflorescences, flowers, siliques, leaves and stems. {ECO:0000269|PubMed:16540543, ECO:0000269|PubMed:19825675}. locus:2064163; AT2G38650 Galacturonosyltransferase Hexosyltransferase (EC 2.4.1.-) Q7XHW0,Q10LZ0 Q7XHW0_ORYSJ,Q10LZ0_ORYSJ Os07g0681700 Os07g0681700 OsJ_25608 OSJNBa0008J01.27 OSNPB_070681700,LOC_Os03g21250 Os03g0330000 OSNPB_030330000 ENOG411DQST THO7B,THO7A Q9M8T6,Q8LDS5 THO7B_ARATH,THO7A_ARATH THO complex subunit 7B (THO complex subunit 7) (AtTHO7),THO complex subunit 7A (THO complex subunit 7) (AtTHO7) FUNCTION: Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. {ECO:0000250}. 27461,26985 THO complex subunit 7B (THO complex subunit 7) (AtTHO7),THO complex subunit 7A (THO complex subunit 7) (AtTHO7) chromosome, telomeric region [GO:0000781]; THO complex [GO:0000347]; THO complex part of transcription export complex [GO:0000445]; RNA binding [GO:0003723]; mRNA export from nucleus [GO:0006406]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2075377;,locus:2149020; AT3G02950,AT5G16790 THO complex subunit 7 Os05g0569800 protein (cDNA clone:001-115-B06, full insert sequence),Os08g0160000 protein (cDNA clone:001-025-B05, full insert sequence) Q6AUN0,Q0J7V5 Q6AUN0_ORYSJ,Q0J7V5_ORYSJ Os05g0569800 OsJ_19601 OSJNBa0040E06.10 OSNPB_050569800,Os08g0160000 Os08g0160000 OSNPB_080160000 ENOG411DQSU Q8GWX2,Q8GYS1 NIPA6_ARATH,NIPA7_ARATH Probable magnesium transporter NIPA6,Probable magnesium transporter NIPA7 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). {ECO:0000250}. 35580,35904 Probable magnesium transporter NIPA6,Probable magnesium transporter NIPA7 early endosome [GO:0005769]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; magnesium ion transmembrane transporter activity [GO:0015095]; magnesium ion transport [GO:0015693] locus:2047112;,locus:2141742; AT2G21120,AT4G38730 magnesium transporter Probable magnesium transporter Q5N731,Q6I5V6,Q5Z9P4 Q5N731_ORYSJ,Q6I5V6_ORYSJ,Q5Z9P4_ORYSJ Os01g0873700 Os01g0873700 OSNPB_010873700 P0491F11.30,Os05g0430700 OJ1378_A04.2 OsJ_18637 OSJNBb0048I21.13 OSNPB_050430700,Os06g0715700 Os06g0715700 OSNPB_060715700 P0481E08.17 FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). {ECO:0000256|RuleBase:RU363078}. ENOG411DQSV MHK10.17 F4IN30 F4IN30_ARATH Alpha/beta-Hydrolases superfamily protein 61650 Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2053819; AT2G42450 Lipase (class 3) Os09g0571500 protein,Os09g0571500 protein (Fragment) Q651A9,A0A0P0XRI1 Q651A9_ORYSJ,A0A0P0XRI1_ORYSJ B1331F11.10-1 Os09g0571500 OSNPB_090571500,Os09g0571500 OSNPB_090571500 ENOG411DQSW Q9M8D3 PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (FGAM synthase) (FGAMS) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase) (FGAR amidotransferase) (FGAR-AT) (Formylglycinamide ribotide amidotransferase) DISRUPTION PHENOTYPE: Lethal to the male gametophyte. {ECO:0000269|PubMed:18441219}. Complete male gametophyte defective; Female gametophyte defective; Heterozygotes: Delayed germination and early development; Low penetrance of chlorosis-F. Bbudar-2008 FUNCTION: Essential to the male gametophyte development. Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. {ECO:0000269|PubMed:18441219}. PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2. ARA:AT1G74260-MONOMER; R-ATH-73817; 6.3.5.3 153954 Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (FGAM synthase) (FGAMS) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase) (FGAR amidotransferase) (FGAR-AT) (Formylglycinamide ribotide amidotransferase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; phosphoribosylformylglycinamidine synthase activity [GO:0004642]; 'de novo' IMP biosynthetic process [GO:0006189]; glutamine metabolic process [GO:0006541]; microgametogenesis [GO:0055046]; pollen development [GO:0009555] locus:2019637; AT1G74260 phosphoribosylformylglycinamidine synthase Os05g0104650 protein,Os01g0888500 protein (Fragment) B9FM04,Q0JH25 B9FM04_ORYSJ,Q0JH25_ORYSJ Os05g0104650 OsJ_16802 OSNPB_050104650,Os01g0888500 Os01g0888500 OSNPB_010888500 ENOG411DQS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os10g0579600 protein (POT family protein, expressed) (Putative peptide transporter) (cDNA clone:J013086I05, full insert sequence) (cDNA clone:J023018P15, full insert sequence) (cDNA clone:J023060H09, full insert sequence) Q7XBS8 Q7XBS8_ORYSJ LOC_Os10g42870 Os10g0579600 OsJ_32602 OSJNBa0056G17.8 OSNPB_100579600 ENOG411DQS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: embryonic flower Os01g0229300 protein (Fragment) A0A0P0UZZ4 A0A0P0UZZ4_ORYSJ Os01g0229300 OSNPB_010229300 ENOG411DQS0 RH10 Q8GY84 RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.4.13) FUNCTION: Involved in leaf polarity establishment by functioning cooperatively with AS2 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures. Involved in the processing of pre-rRNA intermediates at high temperatures. {ECO:0000269|PubMed:27334696}. R-ATH-6791226; 3.6.4.13 51147 DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364] locus:2173517; AT5G60990 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.4.13) (DEAD-box RNA helicase TOGR1) (Protein THERMOTOLERANT GROWTH REQUIRED1),Os03g0669000 protein,Os07g0660000 protein (Fragment) Q7Y183,A0A0P0W1Z4,A0A0P0X9X6 RH10_ORYSJ,A0A0P0W1Z4_ORYSJ,A0A0P0X9X6_ORYSJ RH10 TOGR1 Os03g0669000 LOC_Os03g46610 OsJ_12029 OSJNBa0039O18.13 OSJNBb0036M02.1,Os03g0669000 OSNPB_030669000,Os07g0660000 OSNPB_070660000 DISRUPTION PHENOTYPE: Plant shows a high temperature-dependent growth repression. {ECO:0000269|PubMed:26848586}. FUNCTION: Has ATP-dependent RNA helicase activity in vitro. Acts as a thermosensitive RNA chaperone required for normal processing of pre-rRNA intermediates. Required for normal cell division at high temperatures. Required for a primary metabolism adaptation to high temperatures to support thermotolerant growth by regulating gene expression. {ECO:0000250|UniProtKB:A2XKG2}. ENOG411DQS1 MYJ24.9 Q9FN45 Q9FN45_ARATH At5g23100 (Uncharacterized protein At5g23100) 30166 At5g23100 (Uncharacterized protein At5g23100) locus:2178312; AT5G23100 Protein of unknown function DUF617 NA NA NA NA NA NA NA ENOG411DQS2 petA P56771 CYF_ARATH Cytochrome f FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. {ECO:0000250}. 35357 Cytochrome f chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; cytochrome b6f complex [GO:0009512]; integral component of thylakoid membrane [GO:0031361]; membrane [GO:0016020]; thylakoid [GO:0009579]; electron carrier activity [GO:0009055]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; photosynthetic electron transport chain [GO:0009767] locus:504954677; ATCG00540 Component of the cytochrome b6-f complex which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) cyclic electron flow around PSI and state transitions (By similarity) Cytochrome f P0C389 CYF_ORYSJ petA LOC_Osp1g00480 Nip074 FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. {ECO:0000250}. ENOG411DQS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LETM1-like protein OSJNBa0067K08.12 protein (Os04g0496800 protein) (cDNA clone:J013159H18, full insert sequence) Q7XUK2 Q7XUK2_ORYSJ Os04g0496800 Os04g0496800 OsJ_15330 OSJNBa0067K08.12 OSNPB_040496800 ENOG411DQS4 BZIP17,BZIP28,BZIP49 O22208,Q9SG86,Q9LXX4 BZP17_ARATH,BZP28_ARATH,BZP49_ARATH bZIP transcription factor 17 (AtbZIP17),bZIP transcription factor 28 (AtbZIP28),bZIP transcription factor 49 (AtbZIP49) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased sensitivity to salt-induced osmotic stress. {ECO:0000269|PubMed:17662035}. zip17 mutants exhibit a greater inhibition of primary root elongation in response to NaCl than wild type seedlings. The salt-sensitive phenotype co-segregates with the zip17 T-DNA and can be rescued by a 35S:AtbZIP17 construct. Several salt-responsive genes such as AtHB-7 that showed a reduced transcriptional response to salt in s1p-3 mutants also show a reduced transcriptional response to a salt treatment in zip17 mutants,The transcript levels of three UPR-related genes BiP1 BiP2 and BiP3 are lower in zip28-2 mutant seedlings than in wild type seedlings following a UPR-inducing treatment with tunicamycin.,The transcript levels of three UPR-related genes BiP1 BiP2 and BiP3 are lower in zip28-1 mutant seedlings than in wild type seedlings following a UPR-inducing treatment with tunicamycin. Sensitive to salt-S. Howell-2007,Severe chlorosis at high temperature-R. Larking-2008 FUNCTION: Transcriptional activator involved in salt and osmotic stress responses. Functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Functions as a stress sensor and transducer in ER stress signaling pathway. ER stress induces proteolysis of BZIP17 by SBT6.1 (S1P) and S2P, and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as protein involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269|PubMed:17662035, ECO:0000269|PubMed:20876872}.,FUNCTION: Transcriptional activator involved in ER stress responses. Functions as a stress sensor and transducer in ER stress signaling pathway. After proteolysis by SBT6.1 (S1P) and S2P, the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones (PubMed:18156219, PubMed:18634751, PubMed:18849477, PubMed:20876872). Following ER stress, activates proteins involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269|PubMed:18156219, ECO:0000269|PubMed:18634751, ECO:0000269|PubMed:18849477, ECO:0000269|PubMed:20876872}.,FUNCTION: Transcriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}. 78438,73432,68184 bZIP transcription factor 17 (AtbZIP17),bZIP transcription factor 28 (AtbZIP28),bZIP transcription factor 49 (AtbZIP49) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; hyperosmotic salinity response [GO:0042538]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; nuclear envelope [GO:0005635]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; endoplasmic reticulum unfolded protein response [GO:0030968]; positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response [GO:0006990]; response to endoplasmic reticulum stress [GO:0034976]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986]; transcription, DNA-templated [GO:0006351],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2058510;,locus:2103192;,locus:2102564; AT2G40950,AT3G10800,AT3G56660 transcription factor bZIP transcription factor 39 (OsbZIP39),bZIP transcription factor 60 (OsbZIP60),Os05g0411300 protein (Fragment) Q6AU90,Q8LIB3,A0A0P0WM76 BZP39_ORYSJ,BZP60_ORYSJ,A0A0P0WM76_ORYSJ BZIP39 Os05g0411300 LOC_Os05g34050 OsJ_18536 P0668F02.11,BZIP60 Os07g0644100 LOC_Os07g44950 OJ1003_C06.133 OJ1458_B07.101,Os05g0411300 OSNPB_050411300 FUNCTION: Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.,FUNCTION: Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533}. ENOG411DQS5 LSMT-L Q9XI84 RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic (EC 2.1.1.259) (Aldolases N-methyltransferase) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase-like) (AtLSMT-L) (LSMT-like enzyme) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:22547063}. FUNCTION: Protein-lysine methyltransferase methylating chloroplastic fructose 1,6-bisphosphate aldolases. Can also use with low efficiency gamma-tocopherol methyltransferase as substrate, but not a cytosolic aldolase. Able to interact with unmethylated Rubisco, but unlike in pea, the complex is catalytically unproductive. {ECO:0000269|PubMed:22547063}. ARA:AT1G14030-MONOMER; 2.1.1.259 54612 [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic (EC 2.1.1.259) (Aldolases N-methyltransferase) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase-like) (AtLSMT-L) (LSMT-like enzyme) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity [GO:0030785]; protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026]; peptidyl-lysine trimethylation [GO:0018023] locus:2014764; AT1G14030 ribulose-15 bisphosphate carboxylase oxygenase large subunit N-methyltransferase Os09g0411650 protein (Putative ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast) (cDNA, clone: J100085N23, full insert sequence) Q6ESK6 Q6ESK6_ORYSJ Os09g0411650 OJ1294_G06.18 OSNPB_090411650 ENOG411DQS6 3BETAHSD/D3 A9X4U2 HSDD3_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 (At3BETAHSD/D3) (EC 1.1.1.170) (4alpha-carboxysterol-C3-dehydrogenase/C4-decarboxylase isoform 1-3) (Reticulon-like protein B20) (AtRTNLB20) (Sterol-4-alpha-carboxylate 3-dehydrogenase 3, decarboxylating) PATHWAY: Steroid biosynthesis; zymosterol biosynthesis; zymosterol from lanosterol: step 4/6. ARA:AT2G43420-MONOMER; R-ATH-191273; 1.1.1.170 63033 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 (At3BETAHSD/D3) (EC 1.1.1.170) (4alpha-carboxysterol-C3-dehydrogenase/C4-decarboxylase isoform 1-3) (Reticulon-like protein B20) (AtRTNLB20) (Sterol-4-alpha-carboxylate 3-dehydrogenase 3, decarboxylating) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 3-beta-hydroxy-delta5-steroid dehydrogenase activity [GO:0003854]; 4alpha-carboxy-4beta-methyl-5alpha-cholesta-8-en-3beta-ol:NAD(P)+ 3-oxidoreductase (decarboxylating) activity [GO:0103066]; 4alpha-carboxy-5alpha-cholesta-8-en-3beta-ol:NAD(P)+ 3-dehydrogenase (decarboxylating) activity [GO:0103067]; sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity [GO:0047012]; sterol biosynthetic process [GO:0016126] locus:2058223; AT2G43420 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform Reticulon-like protein Q69IL0 Q69IL0_ORYSJ Os09g0516500 OSJNBb0034B12.13 OSNPB_090516500 P0450E05.38 ENOG411DQS7 Q8S8A2 Q8S8A2_ARATH At2g05755 (Expressed protein) (Nodulin MtN21 /EamA-like transporter family protein) (Uncharacterized protein At2g05755) 43668 At2g05755 (Expressed protein) (Nodulin MtN21 /EamA-like transporter family protein) (Uncharacterized protein At2g05755) integral component of membrane [GO:0016021] locus:505006238; AT2G05755 EamA-like transporter family NA NA NA NA NA NA NA ENOG411EJFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0465000 protein (cDNA clone:002-180-H09, full insert sequence) Q6I5K1 Q6I5K1_ORYSJ Os05g0465000 Os05g0465000 OsJ_18843 OSJNBa0009E21.4 OSNPB_050465000 ENOG411E8AI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8AM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class Os07g0583366 protein,GRF zinc finger family protein (Os11g0531000 protein),Os12g0247366 protein Q84ZS9,Q2R399,A0A0P0Y8V6 Q84ZS9_ORYSJ,Q2R399_ORYSJ,A0A0P0Y8V6_ORYSJ OJ1127_E01.108 Os07g0583366 OsJ_24898 OSNPB_070583366,Os11g0531000 LOC_Os11g32670 OsJ_34109 OSNPB_110531000,Os12g0247366 OSNPB_120247366 ENOG411E8A9 A0A1I9LR13,F4J9K9 A0A1I9LR13_ARATH,F4J9K9_ARATH Neurofilament protein-like protein 70532,73454 Neurofilament protein-like protein locus:2074444; AT3G05900 NA NA NA NA NA NA NA NA ENOG411E8A2 Q9SSQ7,Q9LW01 Q9SSQ7_ARATH,Q9LW01_ARATH At1g52550 (F6D8.23 protein) (Transmembrane protein) (Uncharacterized protein At1g52550/F6D8_23),Transmembrane protein (Uncharacterized protein At3g15780) (Uncharacterized protein At3g15780; MSJ11.18) 14227,12966 At1g52550 (F6D8.23 protein) (Transmembrane protein) (Uncharacterized protein At1g52550/F6D8_23),Transmembrane protein (Uncharacterized protein At3g15780) (Uncharacterized protein At3g15780; MSJ11.18) integral component of membrane [GO:0016021] locus:2035094;,locus:2093187; AT1G52550,AT3G15780 NA NA NA NA NA NA NA NA ENOG411E74M OXS3 Q9LVB9,A8MS05 Q9LVB9_ARATH,A8MS05_ARATH Emb|CAB83157.1 (Oxidative stress 3) (Uncharacterized protein At5g56550),Uncharacterized protein less tolerant to t-BOOH and diamide treatment Sensitive to t-BOOH (organic peroxide) and diamide (oxidizing agent)-D. Ow-2009 19307,16556 Emb|CAB83157.1 (Oxidative stress 3) (Uncharacterized protein At5g56550),Uncharacterized protein nuclear speck [GO:0016607]; response to cadmium ion [GO:0046686]; response to oxidative stress [GO:0006979] locus:2167101;,locus:4010713911; AT5G56550,AT4G26288 Inherit from KOG: Rna binding protein Os06g0559400 protein (cDNA clone:J013142H05, full insert sequence) (cDNA clone:J013162F05, full insert sequence) Q5Z7F9 Q5Z7F9_ORYSJ Os06g0559400 Os06g0559400 OSJNBa0090E14.34 OSNPB_060559400 P0528E12.5 ENOG411E2FG WOX11 Q6X7J3,B3H5D3,A0A1I9LND8,A0A1I9LND7 WOX11_ARATH,B3H5D3_ARATH,A0A1I9LND8_ARATH,A0A1I9LND7_ARATH WUSCHEL-related homeobox 11,WUSCHEL related homeobox 11 FUNCTION: Transcription factor which may be involved in developmental processes. {ECO:0000250}. 29420,32130,35737,33026 WUSCHEL-related homeobox 11,WUSCHEL related homeobox 11 nucleus [GO:0005634]; DNA binding [GO:0003677]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; adventitious root development [GO:0048830]; auxin-activated signaling pathway [GO:0009734],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677] locus:2096429; AT3G03660 wuschel-related homeobox WUSCHEL-related homeobox 11 (OsWOX11) Q0D3I7 WOX11_ORYSJ WOX11 Os07g0684900 LOC_Os07g48560 OsJ_25623 DISRUPTION PHENOTYPE: Reduced crown root development. {ECO:0000269|PubMed:26307379}. FUNCTION: Transcription factor which may be involved in developmental processes (By similarity). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling (PubMed:26307379). {ECO:0000250, ECO:0000269|PubMed:26307379}. ENOG411E2FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E2FE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Homeobox associated leucine zipper Homeobox-leucine zipper protein HOX8 (HD-ZIP protein HOX8) (Homeodomain transcription factor HOX8) (OsHox8) Q338Z7 HOX8_ORYSJ HOX8 Os10g0377300 LOC_Os10g23090 OSJNBa0095C06.14 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E2FD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411E2FC LBD16 Q9SLB7 LBD16_ARATH LOB domain-containing protein 16 (ASYMMETRIC LEAVES 2-like protein 18) (AS2-like protein 18) DISRUPTION PHENOTYPE: Reduced number of lateral roots. {ECO:0000269|PubMed:19717544}. Mutant plants appeared very similar to wild-type plants at both seedling and adult stages. Root growth was inhibited to almost the same extent in both wild-type and mutant seedlings in response to exogenous auxin. In addition the lbd16-1 mutation did not affect auxin-regulated gene expression because auxin-induced IAA5 IAA19 LBD29 and LBD33 to a similar degree in mutant and wild-type seedlings.,The number of lateral roots was reduced slightly in 7-d old mutant seedlings compared to the wild type. Although exogenous auxin induced lateral root formation in mutant as in wild-type seedlings there were fewer lateral roots in auxin-treated mutant than in the wild type. Slightly fewer lateral roots-M. Tasaka-2007 FUNCTION: Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. 26465 LOB domain-containing protein 16 (ASYMMETRIC LEAVES 2-like protein 18) (AS2-like protein 18) nucleus [GO:0005634]; lateral root formation [GO:0010311]; positive regulation of transcription, DNA-templated [GO:0045893] DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. TISSUE SPECIFICITY: Expressed in roots and faintly in shoots. {ECO:0000269|PubMed:12068116}. locus:2053807; AT2G42430 lob domain-containing protein LOB domain protein-like (Os02g0820500 protein) (cDNA clone:002-104-C02, full insert sequence) Q6K713 Q6K713_ORYSJ Os02g0820500 Os02g0820500 OJ1202_E07.33 OSNPB_020820500 P0474F11.14 ENOG411E2FB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os01g0226700 protein Q5NAJ4 Q5NAJ4_ORYSJ Os01g0226700 Os01g0226700 OSNPB_010226700 P0443E07.29 ENOG411E2FA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper bZIP transcription factor 46 (OsBZIP46) (AREB/ABF-family transcription factor 8) (OsAREB8) (Abscisic acid responsive elements-binding factor 2) (ABRE-binding factor 2) (OsABF2) (Abscisic acid responsive elements-binding factor 3) (ABRE-binding factor 3) (OsABF3) (Protein ABI5-LIKE 1) Q69TW5 BZP46_ORYSJ BZIP46 ABF2 ABF3 ABL1 AREB8 Os06g0211200 LOC_Os06g10880 P0021C04.25 P0701E03.2 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased sensitivity to salt and drought stresses (PubMed:20576316). Decreased sensitivity to abscisic acid (ABA) (PubMed:20576316, PubMed:21546455). {ECO:0000269|PubMed:20576316, ECO:0000269|PubMed:21546455}. FUNCTION: Transcription factor involved in abscisic acid (ABA) signaling pathway (PubMed:20576316, PubMed:19947981, PubMed:21546455, PubMed:22301130, PubMed:26300907, PubMed:27468891). Transcription factor activity is fully activated by ABA (PubMed:19947981, PubMed:26300907, PubMed:27468891). Acts as positive regulator of the expression of abiotic stress-responsive genes through an ABA-dependent signaling pathway (PubMed:20576316). Acts as positive regulator of ABA signaling and drought stress tolerance (PubMed:22301130). Plays an important role in ABA and auxin responses. Involved in ABA signaling and stress responses by directly binding to the ABA-responsive element (ABRE)-containing genes, especially WRKY family genes. Modulates response to auxin. Suppresses auxin signaling by targeting ABRE-containing genes related to auxin metabolism or signaling (PubMed:21546455). {ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:20576316, ECO:0000269|PubMed:21546455, ECO:0000269|PubMed:22301130, ECO:0000269|PubMed:26300907, ECO:0000269|PubMed:27468891}. MISCELLANEOUS: Plants over-expressing BZIP46 display increased sensitivity to abscisic acid (ABA). {ECO:0000269|PubMed:22301130}. ENOG411E2FN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0006M15.13 protein (Os04g0455350 protein) (Os04g0455401 protein),Os04g0454600 protein (Fragment),Os04g0452300 protein (Fragment) Q7X7D4,A0A0P0WB35,A0A0P0WAZ5 Q7X7D4_ORYSJ,A0A0P0WB35_ORYSJ,A0A0P0WAZ5_ORYSJ Os04g0455401 Os04g0455350 OsJ_15018 OSJNBa0006M15.13 OSNPB_040455401,Os04g0454600 OSNPB_040454600,Os04g0452300 OSNPB_040452300 ENOG411E2FM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA acidPPc NA NA NA NA NA NA NA ENOG411E2FK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os09g0520400 protein,OSJNBa0027O01.8 protein (Os04g0181300 protein) B9G4L6,Q7XXC1 B9G4L6_ORYSJ,Q7XXC1_ORYSJ Os09g0520400 OsJ_30044 OSNPB_090520400,Os04g0181300 OsJ_13975 OSJNBa0027O01.8 OSNPB_040181300 ENOG411E2FJ HSL2 C0LGX3 HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 (EC 2.7.11.1) (Protein HAESA-LIKE2) DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with RLK5/HAE. Hae and hsl2 double mutants have a strong abscission defect. {ECO:0000269|PubMed:18660431}. Deficient in floral organ abscission. Petals sepals and filaments are retained indefinitely. FUNCTION: Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands. {ECO:0000269|PubMed:18809915}. 2.7.11.1 110710 LRR receptor-like serine/threonine-protein kinase HSL2 (EC 2.7.11.1) (Protein HAESA-LIKE2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; lateral root morphogenesis [GO:0010102]; regulation of gene expression [GO:0010468] DEVELOPMENTAL STAGE: Expression increases shortly before the onset of abscission. {ECO:0000269|PubMed:18660431, ECO:0000269|PubMed:18809915}. TISSUE SPECIFICITY: Expression is restricted to the abscission zone. {ECO:0000269|PubMed:18809915}. locus:2169975; AT5G65710 LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411E2FI PSF1 Q9SSC0,A0A1P8AW89,A0A1P8AW53 Q9SSC0_ARATH,A0A1P8AW89_ARATH,A0A1P8AW53_ARATH At1g80190 (At1g80190 protein) (F18B13.27 protein) (Partner of SLD five 1),Partner of SLD five 1 R-ATH-176974; 23320,17568,24201 At1g80190 (At1g80190 protein) (F18B13.27 protein) (Partner of SLD five 1),Partner of SLD five 1 chloroplast [GO:0009507]; GINS complex [GO:0000811]; 3'-5' DNA helicase activity [GO:0043138]; DNA replication initiation [GO:0006270]; DNA strand elongation involved in mitotic DNA replication [GO:1902983],GINS complex [GO:0000811]; DNA replication [GO:0006260] locus:2016274; AT1G80190 DNA replication complex GINS protein Os05g0453900 protein A0A0N7KKW4 A0A0N7KKW4_ORYSJ Os05g0453900 OSNPB_050453900 ENOG411E2FH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0728200 protein A0A0P0X1S3 A0A0P0X1S3_ORYSJ Os06g0728200 OSNPB_060728200 ENOG411E2FW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411E2FV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynein heavy chain and region D6 of dynein motor NA NA NA NA NA NA NA ENOG411E2FU Q0WR07,A0A1P8AME6 Q0WR07_ARATH,A0A1P8AME6_ARATH Core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein (Uncharacterized protein At1g10880),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 44704,35882 Core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein (Uncharacterized protein At1g10880),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757],transferase activity, transferring glycosyl groups [GO:0016757] locus:2197354; AT1G10880 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411E2FT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411E2FS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS Os01g0340400 protein,Os01g0340000 protein,Os01g0340100 protein,Os01g0340200 protein A2ZSQ9,Q5ZB88,Q942L1,A0A0N7KCW7 A2ZSQ9_ORYSJ,Q5ZB88_ORYSJ,Q942L1_ORYSJ,A0A0N7KCW7_ORYSJ Os01g0340400 OsJ_01625 OSNPB_010340400,Os01g0340000 B1088D01.22 OsJ_01620 OSNPB_010340000,B1088D01.23 Os01g0340100 OSNPB_010340100,Os01g0340200 OSNPB_010340200 ENOG411E2FP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411E2FZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411E2FY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAM OSJNBa0068L06.8 protein (Os04g0102500 protein) Q7XTB5 Q7XTB5_ORYSJ OSJNBa0068L06.8 Os04g0102500 OSNPB_040102500 ENOG411E2FX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2F7 PLMT Q9SAH5 PLMT_ARATH Phosphatidyl-N-methylethanolamine N-methyltransferase (EC 2.1.1.71) (Phospholipid methyltransferase) (PLMT) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19366698}. FUNCTION: Catalyzes the second two steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylmonomethylethanolamine (PMME) to phosphatidyldimethylethanolamine (PDME) and of PDME to phosphatidylcholine (PC). {ECO:0000255|HAMAP-Rule:MF_03216, ECO:0000269|PubMed:19366698}. PATHWAY: Phospholipid metabolism; phosphatidylcholine biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03216}. ARA:AT1G80860-MONOMER; 2.1.1.71; 2.1.1.71 18819 Phosphatidyl-N-methylethanolamine N-methyltransferase (EC 2.1.1.71) (Phospholipid methyltransferase) (PLMT) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [GO:0080101]; phosphatidyl-N-methylethanolamine N-methyltransferase activity [GO:0000773]; phosphatidylcholine biosynthetic process [GO:0006656]; phospholipid biosynthetic process [GO:0008654] locus:2025707; AT1G80860 NA Phosphatidyl-N-methylethanolamine N-methyltransferase (EC 2.1.1.71) (Phospholipid methyltransferase) (PLMT) A3A901 A3A901_ORYSJ Os02g0612100 OsJ_07500 OSNPB_020612100 FUNCTION: Catalyzes the second two steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylmonomethylethanolamine (PMME) to phosphatidyldimethylethanolamine (PDME) and of PDME to phosphatidylcholine (PC). {ECO:0000256|HAMAP-Rule:MF_03216}. ENOG411E2F6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411E2F5 HSFB1 Q96320 HSFB1_ARATH Heat stress transcription factor B-1 (AtHsfB1) (AtHsf-16) (Heat shock factor protein 4) (HSF 4) (Heat shock transcription factor 4) (HSTF 4) FUNCTION: Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 31328 Heat stress transcription factor B-1 (AtHsfB1) (AtHsf-16) (Heat shock factor protein 4) (HSF 4) (Heat shock transcription factor 4) (HSTF 4) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of transcription, DNA-templated [GO:0045892]; response to heat [GO:0009408]; transcription, DNA-templated [GO:0006351] locus:2115015; AT4G36990 heat shock factor Heat stress transcription factor B-1 (Heat stress transcription factor 23) (OsHsf-23) Q67TP9 HSFB1_ORYSJ HSFB1 HSF23 Os09g0456800 LOC_Os09g28354 LOC_Os09g28360 B1342C04.35 FUNCTION: Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. ENOG411E2F4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA JmjN Os12g0473700 protein,Os12g0169500 protein Q2QR43,A0A0P0Y7A9 Q2QR43_ORYSJ,A0A0P0Y7A9_ORYSJ Os12g0473700 LOC_Os12g28860 OsJ_36058 OSNPB_120473700,Os12g0169500 OSNPB_120169500 ENOG411E2F3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) (Fragment),Hexosyltransferase (EC 2.4.1.-) Q0E3N4,A0A0P0VF51 Q0E3N4_ORYSJ,A0A0P0VF51_ORYSJ Os02g0164300 Os02g0164300 OSNPB_020164300,Os02g0164300 OSNPB_020164300 ENOG411E2F2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os02g0250400 protein (cDNA clone:J023056M20, full insert sequence),Os02g0250400 protein (Fragment) B7EI90,A0A0P0VH31 B7EI90_ORYSJ,A0A0P0VH31_ORYSJ Os02g0250400 OSNPB_020250400 ENOG411E2F1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain F-box protein-like (Os02g0537200 protein),Os08g0460700 protein (Fragment),F-box protein family-like protein (Os08g0461300 protein) (cDNA clone:J013036L03, full insert sequence),Os08g0461100 protein (Fragment),Os08g0460900 protein,Os08g0460800 protein,Os03g0217100 protein Q6ETW1,Q0J573,Q6Z225,A0A0P0XGU3,A0A0P0XGG6,A0A0P0XGK8,A0A0P0VUN7 Q6ETW1_ORYSJ,Q0J573_ORYSJ,Q6Z225_ORYSJ,A0A0P0XGU3_ORYSJ,A0A0P0XGG6_ORYSJ,A0A0P0XGK8_ORYSJ,A0A0P0VUN7_ORYSJ Os02g0537200 Os02g0537200 OSNPB_020537200 P0508B05.14,Os08g0460700 Os08g0460700 OSNPB_080460700,Os08g0461300 Os08g0461300 B1111C03.4 OSNPB_080461300 P0690E03.32,Os08g0461100 OSNPB_080461100,Os08g0460900 OSNPB_080460900,Os08g0460800 OSNPB_080460800,Os03g0217100 OSNPB_030217100 ENOG411E2F0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif Calmodulin-binding family protein-like (Os01g0716200 protein) (cDNA clone:J013002N06, full insert sequence),Os01g0716200 protein (Fragment) Q5JMB8,A0A0P0V7E2 Q5JMB8_ORYSJ,A0A0P0V7E2_ORYSJ P0683B11.9-1 Os01g0716200 OsJ_03252 OSNPB_010716200,Os01g0716200 OSNPB_010716200 ENOG411E2F9 PLP1,PLP4,PLP5 O23179,Q9FIY1,O23180,A8MR01,F4JR91,A0A1P8B9H1 PLP1_ARATH,PLP4_ARATH,PLP5_ARATH,A8MR01_ARATH,F4JR91_ARATH,A0A1P8B9H1_ARATH Patatin-like protein 1 (AtPLP1) (EC 3.1.1.-) (Patatin-related phospholipase A IIgamma) (pPLAIIg) (Phospholipase A IVA) (AtPLAIVA),Patatin-like protein 4 (AtPLP4) (EC 3.1.1.-) (Patatin-related phospholipase A IIepsilon) (pPLAIIe) (Phospholipase A V) (AtPLA V),Patatin-like protein 5 (AtPLP5) (EC 3.1.1.-) (Patatin-related phospholipase A IIdelta) (pPLAIId) (Phospholipase A IVB) (AtPLAIVB),Patatin (EC 3.1.1.-) DISRUPTION PHENOTYPE: Decreased number of lateral roots. {ECO:0000269|PubMed:20053799}.,DISRUPTION PHENOTYPE: Slight decrease in number of lateral roots. {ECO:0000269|PubMed:20053799}. Few lateral roots-G. Scherer-2010 FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Catalyzes the hydrolysis of the neutral lipids monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG) and phosphatidylglycerol (PG), and less efficiently the polar lipids phosphatidylcholine (PC) and phosphatidylinositol (PI), but not the storage lipid triacylglycerol (TAG). May play a role in root development. {ECO:0000269|PubMed:12226489, ECO:0000269|PubMed:20053799}.,FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Hydrolyzes phospholipids as well as galactolipids. May play a role in disease resistance (By similarity). {ECO:0000250}.,FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Catalyzes the hydrolysis of the neutral lipids monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG) and phosphatidylglycerol (PG), and less efficiently the polar lipids phosphatidylcholine (PC) and phosphatidylinositol (PI), but not the storage lipid triacylglycerol (TAG). May play a role in root development. {ECO:0000269|PubMed:20053799}.,FUNCTION: Lipolytic acyl hydrolase (LAH). {ECO:0000256|RuleBase:RU361262}. ARA:GQT-1969-MONOMER;,ARA:GQT-1200-MONOMER; 3.1.1.- 45824,45393,45642,40847,49400,53201 Patatin-like protein 1 (AtPLP1) (EC 3.1.1.-) (Patatin-related phospholipase A IIgamma) (pPLAIIg) (Phospholipase A IVA) (AtPLAIVA),Patatin-like protein 4 (AtPLP4) (EC 3.1.1.-) (Patatin-related phospholipase A IIepsilon) (pPLAIIe) (Phospholipase A V) (AtPLA V),Patatin-like protein 5 (AtPLP5) (EC 3.1.1.-) (Patatin-related phospholipase A IIdelta) (pPLAIId) (Phospholipase A IVB) (AtPLAIVB),Patatin (EC 3.1.1.-) cytoplasm [GO:0005737]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; phospholipase activity [GO:0004620]; defense response [GO:0006952]; lateral root formation [GO:0010311]; lipid catabolic process [GO:0016042],cytoplasm [GO:0005737]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; phospholipase activity [GO:0004620]; transferase activity [GO:0016740]; defense response [GO:0006952]; lipid catabolic process [GO:0016042],hydrolase activity [GO:0016787]; transferase activity [GO:0016740]; lipid catabolic process [GO:0016042],phospholipase activity [GO:0004620]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Expressed specifically in roots and root hairs. {ECO:0000269|PubMed:12226489, ECO:0000269|PubMed:20053799}.,TISSUE SPECIFICITY: Expressed in roots, cotyledons and leaves. {ECO:0000269|PubMed:20053799}. locus:2114995;,locus:2158337;,locus:2115040; AT4G37070,AT5G43590,AT4G37060 patatin group A-3-like NA NA NA NA NA NA NA ENOG411E2F8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os06g0307900 protein,Os06g0307900 protein (cDNA clone:001-130-G02, full insert sequence) Q5Z4M8,Q5Z4M7 Q5Z4M8_ORYSJ,Q5Z4M7_ORYSJ P0417E03.24-2 Os06g0307900 OSNPB_060307900,P0417E03.24-1 Os06g0307900 OSNPB_060307900 ENOG411DR80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os04g0679050 protein,Os04g0679000 protein A0A0P0WGJ2,A0A0P0WGH5 A0A0P0WGJ2_ORYSJ,A0A0P0WGH5_ORYSJ Os04g0679050 OSNPB_040679050,Os04g0679000 OSNPB_040679000 ENOG411E71N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0088H09.9 protein (Os04g0684600 protein) (cDNA clone:002-181-F04, full insert sequence),Os08g0102250 protein Q7XPU7,A0A0P0XAU6 Q7XPU7_ORYSJ,A0A0P0XAU6_ORYSJ Os04g0684600 OsJ_16688 OSJNBa0088H09.9 OSNPB_040684600,Os08g0102250 OSNPB_080102250 ENOG411E71M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0133400 protein (Fragment) A0A0P0WSH0 A0A0P0WSH0_ORYSJ Os06g0133400 OSNPB_060133400 ENOG411E71K dl3230w O23294 O23294_ARATH Cotton fiber protein (Uncharacterized protein AT4g14380) (Uncharacterized protein dl3230w) 24190 Cotton fiber protein (Uncharacterized protein AT4g14380) (Uncharacterized protein dl3230w) locus:2129680; AT4G14380 NA NA NA NA NA NA NA NA ENOG411E40V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0698000 protein (VIP1 protein-like) (cDNA clone:001-037-C09, full insert sequence) Q8LJ05 Q8LJ05_ORYSJ Os01g0698000 Os01g0698000 OJ1116_H09.31 OsJ_03131 OSNPB_010698000 ENOG411E40B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0762600 protein (cDNA clone:002-164-C12, full insert sequence) (cDNA clone:J033135G19, full insert sequence) Q6Z6G3 Q6Z6G3_ORYSJ Os02g0762600 Os02g0762600 OsJ_08483 OSNPB_020762600 P0486G03.21 ENOG411E40A RPL34 Q9LP37 RK34_ARATH 50S ribosomal protein L34, chloroplastic (CL34) FUNCTION: This protein binds directly to 23S ribosomal RNA. {ECO:0000250}. 16741 50S ribosomal protein L34, chloroplastic (CL34) chloroplast [GO:0009507]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2029944; AT1G29070 ribosomal protein L34 Os01g0805000 protein (Putative plastid ribosomal protein L34) Q5VQX3 Q5VQX3_ORYSJ Os01g0805000 OsJ_03794 OSNPB_010805000 P0034E02.52 ENOG411E40F Q8L7G1 Q8L7G1_ARATH SAWADEE protein (Uncharacterized protein At4g25330) 26366 SAWADEE protein (Uncharacterized protein At4g25330) chromatin binding [GO:0003682] locus:2122694; AT4G25330 NA Os05g0386400 protein A0A0N7KKP7 A0A0N7KKP7_ORYSJ Os05g0386400 OSNPB_050386400 ENOG411E40D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0552500 protein) Q2R2P8 Q2R2P8_ORYSJ LOC_Os11g35080 Os11g0552500 OSNPB_110552500 ENOG411E40N SCP2 Q9FMN0 Q9FMN0_ARATH Sterol carrier protein 2 (Uncharacterized protein At5g42890) Lower germination frequency and time restored by addition of 1% sucrose. Smaller cotyledon rosettes and shorter hypocotyls than wild-type and the root elongation was also retarded. In the dark root elongation was inhibited on media lacking sucrose 13568 Sterol carrier protein 2 (Uncharacterized protein At5g42890) peroxisome [GO:0005777]; fatty acid beta-oxidation [GO:0006635]; glyoxylate metabolic process [GO:0046487]; intracellular lipid transport [GO:0032365]; response to cytokinin [GO:0009735]; seed germination [GO:0009845] locus:2159966; AT5G42890 Sterol carrier protein 2 Os01g0357200 protein (Sterol carrier protein 2-like) (cDNA clone:J013006N13, full insert sequence),Os06g0211300 protein (Sterol carrier protein 2-like) Q5ZBK3,Q69TW4 Q5ZBK3_ORYSJ,Q69TW4_ORYSJ Os01g0357200 OSNPB_010357200 P0025H06.20,P0021C04.26-1 P0701E03.3-1 Os06g0211300 OsJ_20563 OSNPB_060211300 ENOG411E402 T14N5.3 O80651,Q45GL9,A0A1P8AQS6,A0A1P8AR35 O80651_ARATH,Q45GL9_ARATH,A0A1P8AQS6_ARATH,A0A1P8AR35_ARATH T14N5.3 protein (Transmembrane protein, putative (DUF506)) (Uncharacterized protein At1g77145),Uncharacterized protein,Transmembrane protein, putative (DUF506) 29924,30208,24045,23641 T14N5.3 protein (Transmembrane protein, putative (DUF506)) (Uncharacterized protein At1g77145),Uncharacterized protein,Transmembrane protein, putative (DUF506) integral component of membrane [GO:0016021]; nucleus [GO:0005634],integral component of membrane [GO:0016021] locus:504956170;,locus:2195965; AT1G77145,AT1G77160 Protein of unknown function (DUF506) NA NA NA NA NA NA NA ENOG411EMCP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DOMON domain Membrane protein-like (Os01g0680900 protein),Membrane protein-like (Os01g0680900 protein) (cDNA clone:001-030-C01, full insert sequence) Q5QLG0,Q8LHG0 Q5QLG0_ORYSJ,Q8LHG0_ORYSJ P0019E03.14-2 Os01g0680900 OSNPB_010680900,P0019E03.14-1 Os01g0680900 OSNPB_010680900 ENOG411E407 RPS15AB,RPS15AE O82205,Q9M0E0 R15A2_ARATH,R15A5_ARATH 40S ribosomal protein S15a-2,40S ribosomal protein S15a-5 14694,14916 40S ribosomal protein S15a-2,40S ribosomal protein S15a-5 cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; mitochondrion [GO:0005739]; polysomal ribosome [GO:0042788]; vacuole [GO:0005773]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412] locus:2052025;,locus:2118319; AT2G19720,AT4G29430 ribosomal protein Os02g0255200 protein (Putative 40S ribosomal protein S15A) (cDNA clone:J033037P22, full insert sequence),Os02g0255200 protein (Fragment) Q6EN44,A0A0N7KF14 Q6EN44_ORYSJ,A0A0N7KF14_ORYSJ Os02g0255200 Os02g0255200 OsJ_06122 OSJNBa0052K15.15 OSNPB_020255200,Os02g0255200 OSNPB_020255200 ENOG411E406 MYB3 Q9S9K9,A0A1P8ATW9,A0A1P8ATY3 MYB3_ARATH,A0A1P8ATW9_ARATH,A0A1P8ATY3_ARATH Transcription factor MYB3 (Myb-related protein 3) (AtMYB3),Myb domain protein 3 29352,21003,22765 Transcription factor MYB3 (Myb-related protein 3) (AtMYB3),Myb domain protein 3 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; cinnamic acid biosynthetic process [GO:0009800]; negative regulation of metabolic process [GO:0009892]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}. locus:2009452; AT1G22640 myb domain protein 3 NA NA NA NA NA NA NA ENOG411E404 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0977800 protein Q5JNB2 Q5JNB2_ORYSJ P0020E09.24 Os01g0977800 OSNPB_010977800 ENOG411E408 Q9SI36,B3H468 Q9SI36_ARATH,B3H468_ARATH Expressed protein,Uncharacterized protein 13956,10360 Expressed protein,Uncharacterized protein integral component of membrane [GO:0016021] locus:2045019; AT2G04900 UPF0451 protein C17orf61 homolog Expressed protein (Os03g0751000 protein) (cDNA clone:001-107-A10, full insert sequence) Q75LL8 Q75LL8_ORYSJ OSJNBa0047E24.19 LOC_Os03g53980 Os03g0751000 OsJ_12587 OSNPB_030751000 ENOG411EKW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipase A1-Igamma1 chloroplastic-like NA NA NA NA NA NA NA ENOG411EKW7 MBD2.13 A0A1P8BCZ0,F4K4J2,F4I568 A0A1P8BCZ0_ARATH,F4K4J2_ARATH,F4I568_ARATH Alpha/beta-Hydrolases superfamily protein 46575,54333,57386 Alpha/beta-Hydrolases superfamily protein integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629],hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2160016;,locus:2027584; AT5G42930,AT1G56630 Lipase (class 3) Os05g0153300 protein A0A0P0WI13 A0A0P0WI13_ORYSJ Os05g0153300 OSNPB_050153300 ENOG411EKW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKW8 DAD1-like acylhydrolase Q9C8G6 Q9C8G6_ARATH Alpha/beta-Hydrolases superfamily protein (Lipase, putative) 60742 Alpha/beta-Hydrolases superfamily protein (Lipase, putative) mitochondrion [GO:0005739]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; lipid metabolic process [GO:0006629]; seed coat development [GO:0010214] locus:2204217; AT1G30370 Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKWA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phospholipase Phospholipase A1-II 1 (EC 3.1.1.-) A2ZW16 PLA1_ORYSJ Os01g0651100 LOC_Os01g46240 OsJ_02836 FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ENOG411EKWG TLL1 Q8L7S1,A0A1P8AVY3,F4HRB4 Q8L7S1_ARATH,A0A1P8AVY3_ARATH,F4HRB4_ARATH At1g45200 (At1g45200/At1g45200) (Triacylglycerol lipase-like 1),Triacylglycerol lipase-like 1 ARA:AT1G45201-MONOMER; 54776,57716,44119 At1g45200 (At1g45200/At1g45200) (Triacylglycerol lipase-like 1),Triacylglycerol lipase-like 1 integral component of membrane [GO:0016021]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:1005716681; AT1G45201 triacylglycerol lipase-like 1 NA NA NA NA NA NA NA ENOG411EKWH F4K280 F4K280_ARATH Alpha/beta-Hydrolases superfamily protein 55181 Alpha/beta-Hydrolases superfamily protein membrane [GO:0016020]; hydrolase activity [GO:0016787]; lipid metabolic process [GO:0006629] locus:2155538; AT5G67050 Lipase (class 3) Lipase class 3-like (Os02g0767200 protein),Os02g0767200 protein (Fragment) Q6Z307,A0A0P0VQ30 Q6Z307_ORYSJ,A0A0P0VQ30_ORYSJ Os02g0767200 OJ1004_A11.25 OSNPB_020767200,Os02g0767200 OSNPB_020767200 ENOG411EKWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA lipase precursor NA NA NA NA NA NA NA ENOG411EKWM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EKWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Os08g0143600 protein (Putative DEFECTIVE IN ANTHER DEHISCENCE1) Q6ZDM3 Q6ZDM3_ORYSJ P0025F03.19 Os08g0143600 OSNPB_080143600 ENOG411EKWQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipase A1-Igamma3 NA NA NA NA NA NA NA ENOG411EKWU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Lipase family protein, expressed (Os11g0655800 protein) Q2R077 Q2R077_ORYSJ LOC_Os11g43510 Os11g0655800 OsJ_34696 OSNPB_110655800 ENOG411EKWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Phospholipase A1-II 6 (EC 3.1.1.-),Os01g0968500 protein (Fragment),Os05g0348900 protein (Fragment) Q6F358,A0A0P0VDG2,A0A0P0WL87 PLA6_ORYSJ,A0A0P0VDG2_ORYSJ,A0A0P0WL87_ORYSJ Os05g0574000 LOC_Os05g49830 OJ1268_B08.3 OJ1735_C10.21 OsJ_19631,Os01g0968500 OSNPB_010968500,Os05g0348900 OSNPB_050348900 FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position. {ECO:0000250}. ENOG411EKWY F4JZ11,F4JZ12 F4JZ11_ARATH,F4JZ12_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein R-ATH-72163; 28595,18272 RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2156897; AT5G66010 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EKWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EKWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Heterogeneous nuclear ribonucleoprotein, putative, expressed (Os11g0133600 protein) (cDNA clone:001-014-D07, full insert sequence),Os12g0131000 protein (Fragment),Os02g0832900 protein (Fragment) Q2RAY1,A0A0P0Y6K1,A0A0P0VRP1 Q2RAY1_ORYSJ,A0A0P0Y6K1_ORYSJ,A0A0P0VRP1_ORYSJ Os11g0133600 LOC_Os11g03890 Os11g0133600 OsJ_32846 OSNPB_110133600,Os12g0131000 OSNPB_120131000,Os02g0832900 OSNPB_020832900 ENOG411EJRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PGAP1-like protein NA NA NA NA NA NA NA ENOG411EJRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRIP domain NA NA NA NA NA NA NA ENOG411EB9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: dual-specificity tyrosine-(Y)-phosphorylation regulated kinase Os04g0602800 protein (Fragment) A0A0P0WEC7 A0A0P0WEC7_ORYSJ Os04g0602800 OSNPB_040602800 ENOG411ECDC KCO3,TPK2,TPK3 Q9XFR0,Q9FL25,Q9SVV6 KCO3_ARATH,KCO2_ARATH,KCO6_ARATH Potassium inward rectifier (Kir)-like channel 3 (AtKCO3),Two-pore potassium channel 2 (AtTPK2) (Calcium-activated outward-rectifying potassium channel 2) (AtKCO2),Two-pore potassium channel 3 (AtTPK3) (Calcium-activated outward-rectifying potassium channel 6) (AtKCO6) DISRUPTION PHENOTYPE: RNAi-mediated knockdown of the protein causes no effects on germination or on plants grown under normal conditions, but decreases the rosette size, enhances the accumulation of anthocyans and desorganizes the photosynthetic membranes when the plants are grown under high light. {ECO:0000269|PubMed:24009357}. FUNCTION: Probable calcium-activated potassium channel. {ECO:0000250}.,FUNCTION: Probable voltage-independent potassium-selective tonoplast ion channel.,FUNCTION: Two-pore potassium channel modulating the proton motive force (pmf) necessary to convert photochemical energy into physiological functions. Mediates the potassium efflux from the thylakoid lumen required for the regulation of the transmembrane electrical potential, the enhancement of the pH gradient for ATP synthesis, the regulation of electron flow, and pH-mediated photoprotective responses. Requires calcium for channel activity. {ECO:0000269|PubMed:24009357}. 29108,49326,48732 Potassium inward rectifier (Kir)-like channel 3 (AtKCO3),Two-pore potassium channel 2 (AtTPK2) (Calcium-activated outward-rectifying potassium channel 2) (AtKCO2),Two-pore potassium channel 3 (AtTPK3) (Calcium-activated outward-rectifying potassium channel 6) (AtKCO6) integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; metal ion binding [GO:0046872]; potassium ion leak channel activity [GO:0022841]; potassium ion transmembrane transport [GO:0071805]; protein homooligomerization [GO:0051260]; stabilization of membrane potential [GO:0030322],integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; metal ion binding [GO:0046872]; potassium ion leak channel activity [GO:0022841]; potassium ion transmembrane transport [GO:0071805]; stabilization of membrane potential [GO:0030322],chloroplast stromal thylakoid [GO:0009533]; chloroplast thylakoid membrane [GO:0009535]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; metal ion binding [GO:0046872]; potassium channel activity [GO:0005267]; potassium ion leak channel activity [GO:0022841]; nonphotochemical quenching [GO:0010196]; potassium ion transmembrane transport [GO:0071805]; stabilization of membrane potential [GO:0030322]; thylakoid membrane organization [GO:0010027] TISSUE SPECIFICITY: Expressed in hydathodes and the vascular tissues of roots, stems, leaves and flowers. {ECO:0000269|PubMed:16984403}.,TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:16984403}.,TISSUE SPECIFICITY: Expressed in roots, stems, hypocotyls, leaves and flowers. Detected in root tips and in mesophyll cells and guard cells of the leaves. {ECO:0000269|PubMed:11821043, ECO:0000269|PubMed:16984403}. locus:2170413;,locus:2170423;,locus:2117681; AT5G46360,AT5G46370,AT4G18160 ca2 activated outward rectifying k channel 2 NA NA NA NA NA NA NA ENOG411E8R1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8R0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial domain of unknown function (DUF1713) Expressed protein (Os03g0670000 protein) (cDNA clone:001-118-G09, full insert sequence) (cDNA clone:002-120-C07, full insert sequence) Q10FF2 Q10FF2_ORYSJ Os03g0670000 LOC_Os03g46730 OSNPB_030670000 ENOG411E8R3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0702200 protein (cDNA clone:002-172-E03, full insert sequence) Q5Z8X1 Q5Z8X1_ORYSJ Os06g0702200 OSNPB_060702200 P0596H10.27 ENOG411E8R2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411E8R5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8R4 Q8RUI1 Q8RUI1_ARATH Expressed protein 14072 Expressed protein plasma membrane [GO:0005886] locus:505006273; AT2G25735 NA NA NA NA NA NA NA NA ENOG411E8R7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Rhodanese-like domain containing protein NA NA NA NA NA NA NA ENOG411E8R6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: CUE domain containing protein NA NA NA NA NA NA NA ENOG411E8R9 PSK5 Q9FEB4 PSK5_ARATH Phytosulfokines 5 (AtPSK5) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation (By similarity). May be involved in the low quiescent center cell proliferation. {ECO:0000250}. 8749 Phytosulfokines 5 (AtPSK5) [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] extracellular matrix [GO:0031012]; growth factor activity [GO:0008083]; cell differentiation [GO:0030154]; cell proliferation [GO:0008283]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Expressed in stems, roots, mature leaves and flowers. Most abundant in vascular bundles. {ECO:0000269|PubMed:16829587}. locus:2152084; AT5G65870 Promotes plant cell differentiation organogenesis and somatic embryogenesis as well as cell proliferation Phytosulfokines 4 [Cleaved into: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] Q9AR88 PSK4_ORYSJ PSK4 Os07g0124100 LOC_Os07g03200 OJ1007_H09.107 OsJ_22943 OSJNBa0057M23.146 P0474G09.107 FUNCTION: Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation. ENOG411E8R8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJR8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SNF2 histone linker PHD RING helicase E3 ubiquitin protein ligase NA NA NA NA NA NA NA ENOG411E8RQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family NA NA NA NA NA NA NA ENOG411E8RP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ domain containing protein Os05g0211700 protein B9FIV0 B9FIV0_ORYSJ Os05g0211700 OsJ_17536 OSNPB_050211700 ENOG411E8RR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins like carboxypeptidase Y (CPY) and proteinase A. Executes multiple rounds of sorting by cycling between the late Golgi and a prevacuolar endosome-like compartment NA NA NA NA NA NA NA ENOG411E8RU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA sigma factor binding protein 1 NA NA NA NA NA NA NA ENOG411E8RW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E8RV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RY MT4A,MT4B,AtMT4b,AtMT4a P93746,Q42377,F4ILI2,F4ILY7 MT4A_ARATH,MT4B_ARATH,F4ILI2_ARATH,F4ILY7_ARATH Metallothionein-like protein 4A (MT-4A) (EC protein homolog 1),Metallothionein-like protein 4B (MT-4B) (EC protein homolog 2),Plant EC metallothionein-like protein, family 15,Plant EC metallothionein family protein FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals (Probable). Functions as metal chelator of copper (Cu) and zinc (Zn) (PubMed:18287486). Plays a role in storing and distributing Zn ion in seed (PubMed:22014117). {ECO:0000269|PubMed:18287486, ECO:0000269|PubMed:22014117, ECO:0000305}. MISCELLANEOUS: Plants silencing both MT4A and MT4B have reduced seed weight and reduced seedling growth after germination. {ECO:0000269|PubMed:22014117}. 8290,8437,8319,12229 Metallothionein-like protein 4A (MT-4A) (EC protein homolog 1),Metallothionein-like protein 4B (MT-4B) (EC protein homolog 2),Plant EC metallothionein-like protein, family 15,Plant EC metallothionein family protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; zinc ion binding [GO:0008270],cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; zinc ion binding [GO:0008270]; zinc II ion transport [GO:0006829],zinc ion binding [GO:0008270],cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; zinc ion binding [GO:0008270]; zinc II ion transport [GO:0006829] DEVELOPMENTAL STAGE: During embryo development, expressed from torpedo stage (6 days after pollination) to mature embryo. {ECO:0000269|PubMed:22014117}. TISSUE SPECIFICITY: Expressed specifically in seeds. {ECO:0000269|PubMed:22014117}. locus:2058593;,locus:2064617; AT2G42000,AT2G23240 Binds 5 molecules of zinc. May have a role in Zn(2 ) homeostasis during embryogenesis (By similarity) NA NA NA NA NA NA NA ENOG411E8RX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: glycine-rich protein NA NA NA NA NA NA NA ENOG411E8RA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chlorophyll A-B binding protein NA NA NA NA NA NA NA ENOG411E8RE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0463900 protein) Q8H917 Q8H917_ORYSJ LOC_Os10g32690 Os10g0463900 OsJ_31811 OSJNBa0071K18.6 OSNPB_100463900 ENOG411E8RG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0888850 protein Q5N844 Q5N844_ORYSJ B1099D03.34 Os01g0888850 OSNPB_010888850 ENOG411E8RI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0230875 protein (Fragment),Os06g0553550 protein A0A0N7KEZ3,A0A0P0WXR1 A0A0N7KEZ3_ORYSJ,A0A0P0WXR1_ORYSJ Os02g0230875 OSNPB_020230875,Os06g0553550 OSNPB_060553550 ENOG411E8RH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8RJ Q9SZ28 STGL1_ARATH Stigma-specific STIG1-like protein 1 16540 Stigma-specific STIG1-like protein 1 locus:2116407; AT4G26880 Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411E8RM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E8RN F17F16.6 Q9FWQ7 Q9FWQ7_ARATH F17F16.6 protein 21686 F17F16.6 protein peroxisome [GO:0005777] locus:2015621; AT1G16730 NA NA NA NA NA NA NA NA ENOG411ECDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: whole genome shotgun sequence NA NA NA NA NA NA NA ENOG411EJR1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Breast cancer 2 early onset NA NA NA NA NA NA NA ENOG411EMPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SPX domain NA NA NA NA NA NA NA ENOG411E3HT Q9M152 Q9M152_ARATH At4g01140 (Transmembrane protein, putative (DUF1191)) (Uncharacterized protein AT4g01140) 34464 At4g01140 (Transmembrane protein, putative (DUF1191)) (Uncharacterized protein AT4g01140) integral component of membrane [GO:0016021] locus:2125003; AT4G01140 Protein of unknown function (DUF1191) NA NA NA NA NA NA NA ENOG411E3HU T19F6.7 O22978 O22978_ARATH T19F6.7 protein (Uncharacterized protein AT4g24130) (Uncharacterized protein At4g24130/T19F6_120) 17955 T19F6.7 protein (Uncharacterized protein AT4g24130) (Uncharacterized protein At4g24130/T19F6_120) nucleus [GO:0005634] locus:2134966; AT4G24130 Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411E3HY Q0V805,A0A1P8AQL6 Q0V805_ARATH,A0A1P8AQL6_ARATH At1g21090 (Cupredoxin superfamily protein),Cupredoxin superfamily protein 26221,24346 At1g21090 (Cupredoxin superfamily protein),Cupredoxin superfamily protein anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2199617; AT1G21090 NA NA NA NA NA NA NA NA ENOG411E3HE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os09g0381600 protein (cDNA clone:002-132-E04, full insert sequence) Q6H599 Q6H599_ORYSJ Os09g0381600 OsJ_29195 OSNPB_090381600 P0027G10.62 P0505H05.9 ENOG411E3HG LLG1,LRE Q9FKT1,B3GS44 LLG1_ARATH,LRE_ARATH GPI-anchored protein LLG1 (LORELEI-like-GPI-anchored protein 1),GPI-anchored protein LORELEI DISRUPTION PHENOTYPE: Retarded growth, collapsed root hairs, defective trichomes, abnormal accumulation of high levels of anthocyanin and overall reduced plant size (PubMed:26052747). No aborted seed phenotype and normal production of seed sets (PubMed:20163554, PubMed:26052747). {ECO:0000269|PubMed:20163554, ECO:0000269|PubMed:26052747}.,DISRUPTION PHENOTYPE: Failure of pollen tube arrest and fertilization. Deficient in pollen tube reception by the female gametophyte. {ECO:0000269|PubMed:19028964}. Approximately 20% of embryo sacs show invasion by multiple pollen tubes. About 25% of embryo sacs abort. Morphology and development of the embryo sacs appears normal. Embryo defective; Female gametophyte defective-V. Sundaresan-2008 FUNCTION: Component of the FER-regulated Rho GTPase signaling complex. Acts as a chaperone and coreceptor for FER. Required for localization of FER to the plasma membrane. {ECO:0000269|PubMed:26052747}.,FUNCTION: Female gametophyte-specific component of the signaling pathway required for fertilization. Required for reception of the pollen tube by the female gametophyte (PubMed:19028964, PubMed:26052747, PubMed:27081182). Acts specifically at the synergid cell surface for pollen tube reception (PubMed:26052747, PubMed:27081182). Plays a role in double fertilization and early seed development (PubMed:20163554). Component of the FER-regulated Rho GTPase signaling complex. Acts as a chaperone and coreceptor for FER. Required for localization of FER to the plasma membrane (PubMed:26052747). {ECO:0000269|PubMed:19028964, ECO:0000269|PubMed:20163554, ECO:0000269|PubMed:26052747, ECO:0000269|PubMed:27081182}. 18460,18337 GPI-anchored protein LLG1 (LORELEI-like-GPI-anchored protein 1),GPI-anchored protein LORELEI anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; positive regulation of growth [GO:0045927],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; double fertilization forming a zygote and endosperm [GO:0009567]; pollen tube guidance [GO:0010183]; pollen tube reception [GO:0010483]; single fertilization [GO:0007338]; synergid death [GO:0010198] DEVELOPMENTAL STAGE: Expressed only in fully differentiated cells of the egg apparatus. Not detected in developing ovules undergoing megasporogenesis or megagametogenesis (PubMed:19028964). Expressed in unfertilized, mature ovules (PubMed:20163554). {ECO:0000269|PubMed:19028964, ECO:0000269|PubMed:20163554}. TISSUE SPECIFICITY: Expressed in pollen, pollen tubes, sporophytic pistil tissues, in the early stages of female gametophyte development, and in unfertilized, mature ovules (PubMed:20163554). Expressed in roots, lateral roots, shoots, cotyledons, petioles, developing leaves and anther filaments. {ECO:0000269|PubMed:20163554}.,TISSUE SPECIFICITY: Expressed in leaves, buds, flowers and stems (PubMed:19028964). Highest expression in the synergid cells of the female gametophyte (PubMed:19028964, PubMed:26052747). {ECO:0000269|PubMed:19028964, ECO:0000269|PubMed:26052747}. locus:2161780;,locus:4515103457; AT5G56170,AT4G26466 gpi-anchored protein Os02g0721700 protein (cDNA clone:001-025-A04, full insert sequence) (cDNA clone:006-309-H03, full insert sequence) Q6Z662 Q6Z662_ORYSJ Os02g0721700 OsJ_08187 OSNPB_020721700 P0654B04.18 ENOG411E3HA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBL-interacting protein kinase NA NA NA NA NA NA NA ENOG411E3HM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: kiaa1033 Os06g0136700 protein (cDNA clone:J013001L08, full insert sequence) Q0DET1 Q0DET1_ORYSJ Os06g0136700 Os06g0136700 OSNPB_060136700 ENOG411E3HN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os02g0672300 protein A0A0P0VN56 A0A0P0VN56_ORYSJ Os02g0672300 OSNPB_020672300 ENOG411E3H4 A0A1P8B8B7,F4JIF2 A0A1P8B8B7_ARATH,F4JIF2_ARATH Neurogenic locus notch-like protein 19645,23354 Neurogenic locus notch-like protein anchored component of membrane [GO:0031225] locus:504955446; AT4G14746 NA Expressed protein (Os03g0161500 protein) (cDNA clone:006-209-C11, full insert sequence) Q10RE8 Q10RE8_ORYSJ Os03g0161500 LOC_Os03g06580 Os03g0161500 OSNPB_030161500 ENOG411E3H5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os06g0148000 protein (cDNA clone:006-204-E02, full insert sequence) Q5VP35 Q5VP35_ORYSJ Os06g0148000 Os06g0148000 OSNPB_060148000 P0036F10.42 P0624B04.2 ENOG411E3H6 WRKY49 Q9FHR7 WRK49_ARATH Probable WRKY transcription factor 49 (WRKY DNA-binding protein 49) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 31581 Probable WRKY transcription factor 49 (WRKY DNA-binding protein 49) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2169268; AT5G43290 WRKY transcription factor Os01g0972800 protein (Putative WRKY DNA-binding protein 49) (WRKY17) (cDNA clone:002-169-B02, full insert sequence) Q5JM93 Q5JM93_ORYSJ Os01g0972800 Os01g0972800 OsJ_04935 OSNPB_010972800 P0518C01.36 P0698H10.10 ENOG411E3H7 Q84VV3 Q84VV3_ARATH At5g20120 (Testis-and ovary-specific PAZ domain protein) (Uncharacterized protein At5g20120) 21557 At5g20120 (Testis-and ovary-specific PAZ domain protein) (Uncharacterized protein At5g20120) integral component of membrane [GO:0016021] locus:2149219; AT5G20120 NA NA NA NA NA NA NA NA ENOG411E3H0 Q94K52,Q1G3L2,A0A1P8B524,A0A1P8B516 Q94K52_ARATH,Q1G3L2_ARATH,A0A1P8B524_ARATH,A0A1P8B516_ARATH Polyketide cyclase/dehydrase and lipid transport superfamily protein (Uncharacterized protein At1g02475),Polyketide cyclase / dehydrase and lipid transport protein 25037,25288,23389,22313 Polyketide cyclase/dehydrase and lipid transport superfamily protein (Uncharacterized protein At1g02475),Polyketide cyclase / dehydrase and lipid transport protein chloroplast [GO:0009507] locus:505006094;,locus:1009023371; AT1G02475,AT4G01883 Polyketide cyclase / dehydrase and lipid transport Os01g0328600 protein A0A0P0V1X9 A0A0P0V1X9_ORYSJ Os01g0328600 OSNPB_010328600 ENOG411E3H1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0281201 protein) Q10N64 Q10N64_ORYSJ Os03g0281201 LOC_Os03g17260 OSNPB_030281201 ENOG411E3H2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fibronectin-binding protein A N-terminus (FbpA) NA NA NA NA NA NA NA ENOG411E3H3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Intraflagellar transport protein NA NA NA NA NA NA NA ENOG411E3H8 BHLH168,BHLH167 Q9XIJ1,F4I4E1,A0A1P8ANB9,B3H4W4 BH168_ARATH,BH167_ARATH,A0A1P8ANB9_ARATH,B3H4W4_ARATH Transcription factor bHLH168 (Basic helix-loop-helix protein 168) (AtbHLH168) (bHLH 168) (bHLH transcription factor bHLH168),Transcription factor bHLH167 (Basic helix-loop-helix protein 167) (AtbHLH167) (bHLH 167) (bHLH transcription factor bHLH167),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 20083,21070,17212,13166 Transcription factor bHLH168 (Basic helix-loop-helix protein 168) (AtbHLH168) (bHLH 168) (bHLH transcription factor bHLH168),Transcription factor bHLH167 (Basic helix-loop-helix protein 167) (AtbHLH167) (bHLH 167) (bHLH transcription factor bHLH167),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],cytoplasm [GO:0005737]; nucleus [GO:0005634]; RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:4515102513;,locus:505006117; AT1G10586,AT1G10585 HLH Os01g0108600 protein (cDNA clone:006-308-A12, full insert sequence),Os01g0108600 protein Q8W0N9,Q0JRC5 Q8W0N9_ORYSJ,Q0JRC5_ORYSJ P0482C06.23-1 Os01g0108600 OSNPB_010108600,Os01g0108600 Os01g0108600 OSNPB_010108600 ENOG411E3H9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os10g0546900 protein A0A0P0XWX4 A0A0P0XWX4_ORYSJ Os10g0546900 OSNPB_100546900 ENOG411EAXJ MYB114,MYB75,MYB90,MYB113 Q9FNV8,Q9FE25,Q9ZTC3,Q9FNV9,A0A1P8AQN3 MY114_ARATH,MYB75_ARATH,MYB90_ARATH,MY113_ARATH,A0A1P8AQN3_ARATH Transcription factor MYB114 (Myb-related protein 114) (AtMYB114),Transcription factor MYB75 (Myb-related protein 75) (AtMYB75) (Production of anthocyanin pigment 1 protein) (Suc-induced anthocyanin accumulation locus 1),Transcription factor MYB90 (Myb-related protein 90) (AtMYB90) (Production of anthocyanin pigment 2 protein),Transcription factor MYB113 (Myb-related protein 113) (AtMYB113),Myb domain protein 114 Cotyledons do not turn purple in response to sucrose-S. Smeekens-2005 FUNCTION: Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.,FUNCTION: Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of. phenylpropanoid-derived compounds such as anthocyanins and proanthocyanidin, probably together with GL3 and BHLH2. Regulates the expression of CHS, DFRA, LDOX, and BAN. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15807784, ECO:0000269|PubMed:16299184, ECO:0000269|PubMed:17147621}.,FUNCTION: Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. MISCELLANEOUS: This protein has reduced anthocyanins induction activity in cv C24 and cv cvi-1 backgrounds. 16007,28470,28100,28307,12299 Transcription factor MYB114 (Myb-related protein 114) (AtMYB114),Transcription factor MYB75 (Myb-related protein 75) (AtMYB75) (Production of anthocyanin pigment 1 protein) (Suc-induced anthocyanin accumulation locus 1),Transcription factor MYB90 (Myb-related protein 90) (AtMYB90) (Production of anthocyanin pigment 2 protein),Transcription factor MYB113 (Myb-related protein 113) (AtMYB113),Myb domain protein 114 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; anthocyanin-containing compound biosynthetic process [GO:0009718]; cell differentiation [GO:0030154]; defense response to fungus [GO:0050832]; jasmonic acid mediated signaling pathway [GO:0009867]; positive regulation of anthocyanin biosynthetic process [GO:0031542]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; removal of superoxide radicals [GO:0019430]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salt stress [GO:0009651]; sucrose mediated signaling [GO:0009745]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; multicellular organism development [GO:0007275]; regulation of anthocyanin biosynthetic process [GO:0031540]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to jasmonic acid [GO:0009753]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Mostly expressed in mature plant aerial part. Detected ubiquitously, with higher levels in rosette leaves and flowers. {ECO:0000269|PubMed:17147621, ECO:0000269|PubMed:9839469}.,TISSUE SPECIFICITY: Expressed only in leaves and siliques. {ECO:0000269|PubMed:9839469}. locus:2201517;,locus:2027523;,locus:2201532;,locus:2201507; AT1G66380,AT1G56650,AT1G66390,AT1G66370 Transcription factor NA NA NA NA NA NA NA ENOG411E5J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hereditary spastic paraplegia protein strumpellin NA NA NA NA NA NA NA ENOG411EMQ0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0105350 protein,Os02g0550850 protein A0A0N7KSA9,A0A0P0VK49 A0A0N7KSA9_ORYSJ,A0A0P0VK49_ORYSJ Os11g0105350 OSNPB_110105350,Os02g0550850 OSNPB_020550850 ENOG411EG1X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411EG1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA impB/mucB/samB family NA NA NA NA NA NA NA ENOG411EG1J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain NA NA NA NA NA NA NA ENOG411EG1I Q3EB28 Q3EB28_ARATH Uncharacterized protein 13673 Uncharacterized protein locus:2089945; AT3G21680 NA NA NA NA NA NA NA NA ENOG411EG1H Q9T038 Q9T038_ARATH AT4g39320/T22F8_220 (Microtubule-associated protein-like protein) (Uncharacterized protein AT4g39320) (Uncharacterized protein T22F8.220) 18469 AT4g39320/T22F8_220 (Microtubule-associated protein-like protein) (Uncharacterized protein AT4g39320) (Uncharacterized protein T22F8.220) plasma membrane [GO:0005886] locus:2136388; AT4G39320 NA NA NA NA NA NA NA NA ENOG411EG1G T8M16_60 Q9LET4,A6QR85,F4J0R7,F4J0R8 Q9LET4_ARATH,A6QR85_ARATH,F4J0R7_ARATH,F4J0R8_ARATH Putative endonuclease or glycosyl hydrolase (Uncharacterized protein T8M16_60),At3g62050 (Putative endonuclease or glycosyl hydrolase),Putative endonuclease or glycosyl hydrolase 18293,17609,19094,18440 Putative endonuclease or glycosyl hydrolase (Uncharacterized protein T8M16_60),At3g62050 (Putative endonuclease or glycosyl hydrolase),Putative endonuclease or glycosyl hydrolase peroxisome [GO:0005777]; endonuclease activity [GO:0004519]; regulation of gene expression [GO:0010468] locus:2097963;,locus:2103610; AT3G62050,AT3G56730 BEST Arabidopsis thaliana protein match is EDA32 (embryo sac development arrest 32) (TAIR AT3G62210.1) NA NA NA NA NA NA NA ENOG411EG1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD Os03g0266600 protein A0A0P0VVU6 A0A0P0VVU6_ORYSJ Os03g0266600 OSNPB_030266600 ENOG411EG1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0389200 protein,Os07g0423350 protein,Os07g0424000 protein,Os07g0424300 protein A3A3F6,A3BJ36,A0A0P0X584,A0A0P0X5R1 A3A3F6_ORYSJ,A3BJ36_ORYSJ,A0A0P0X584_ORYSJ,A0A0P0X5R1_ORYSJ Os05g0389200 OsJ_05492 OSNPB_050389200,Os07g0423350 OsJ_24010 OSNPB_070423350,Os07g0424000 OSNPB_070424000,Os07g0424300 OSNPB_070424300 ENOG411EG19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Glutaredoxin NA NA NA NA NA NA NA ENOG411EG18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG17 MRA19.3 Q9FK78 Q9FK78_ARATH Uncharacterized protein 13386 Uncharacterized protein locus:2172008; AT5G45630 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411EG16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EG15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG12 MFC16.22 Q9FI11 Q9FI11_ARATH Similarity to tapetum-specific protein (Tapetum specific protein TAP35/TAP44) 12851 Similarity to tapetum-specific protein (Tapetum specific protein TAP35/TAP44) locus:2163376; AT5G44540 tapetum-specific protein-related NA NA NA NA NA NA NA ENOG411EG11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: MYND finger domain protein NA NA NA NA NA NA NA ENOG411EMQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger DNA topoisomerase (EC 5.99.1.2) Q6F3B9 Q6F3B9_ORYSJ LOC_Os03g57260 Os03g0786500 OsJ_12863 OSJNBb0024J04.1 OSNPB_030786500 FUNCTION: Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. {ECO:0000256|RuleBase:RU362092}. ENOG411DQ8I BT2,BT1 Q94BN0,Q9FMK7,A0A1P8BEH5,A0A1P8BEI0,A0A1I9LNB8,A0A1I9LNB7 BT2_ARATH,BT1_ARATH,A0A1P8BEH5_ARATH,A0A1P8BEI0_ARATH,A0A1I9LNB8_ARATH,A0A1I9LNB7_ARATH BTB/POZ and TAZ domain-containing protein 2 (BTB and TAZ domain protein 2),BTB/POZ and TAZ domain-containing protein 1 (BTB and TAZ domain protein 1),BTB and TAZ domain protein 1,BTB and TAZ domain protein 2 DISRUPTION PHENOTYPE: Altered response to auxin. Blocked ability of TAC1 to induce telomerase. Hypersensitive response to both sugar and abscisic acid (ABA)-mediated inhibition of germination. {ECO:0000269|PubMed:17220202, ECO:0000269|PubMed:19525324}. Both heterozygoytes and homozygotes have a WT phenotype,Reduced seed set and shortened siliques. Phenotype is identical to bt2-3/+;bt3-1/+,Embryo lethal - not recovered.,same as smb-3 single mutant,Double homozygotes are embryo lethal. Double heterozygotes have short siliques and a reduced seed set.,Homozygotes have a WT phenotype Sensitive to sugar and ABA-T. McKnight-2009 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Plays a key role as a component of the TAC1-mediated telomerase activation pathway certainly by targeting a telomerase repressor to degradation. Seems to occupy an integral position in a complex signaling network that perceives, integrates, and responds to multiple, and sometimes competing, signals. Enhances responses to auxin in postgermination and vegetative development. Also negatively regulates ABA- and sugar-mediated inhibition of the germination. Essential for female and male gametophyte development. {ECO:0000269|PubMed:17220202, ECO:0000269|PubMed:19054356, ECO:0000269|PubMed:19525324}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Also targeted for degradation by the 26S proteasome pathway. May be involved in gametophyte development. {ECO:0000269|PubMed:19054356}. PATHWAY: Protein modification; protein ubiquitination. 41561,41480,34286,32560,38268,30025 BTB/POZ and TAZ domain-containing protein 2 (BTB and TAZ domain protein 2),BTB/POZ and TAZ domain-containing protein 1 (BTB and TAZ domain protein 1),BTB and TAZ domain protein 1,BTB and TAZ domain protein 2 cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; calmodulin binding [GO:0005516]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; ubiquitin protein ligase binding [GO:0031625]; zinc ion binding [GO:0008270]; abscisic acid-activated signaling pathway [GO:0009738]; auxin-activated signaling pathway [GO:0009734]; circadian rhythm [GO:0007623]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; positive regulation of telomerase activity [GO:0051973]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to carbohydrate [GO:0009743]; response to cold [GO:0009409]; response to hydrogen peroxide [GO:0042542]; response to jasmonic acid [GO:0009753]; response to nitrate [GO:0010167]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; sugar mediated signaling pathway [GO:0010182],cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; calmodulin binding [GO:0005516]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; ubiquitin protein ligase binding [GO:0031625]; zinc ion binding [GO:0008270]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to hydrogen peroxide [GO:0042542]; response to salicylic acid [GO:0009751],nucleus [GO:0005634]; histone acetyltransferase activity [GO:0004402]; transcription cofactor activity [GO:0003712]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Preferentially expressed in young leaves and roots. {ECO:0000269|PubMed:15316289, ECO:0000269|PubMed:19054356}.,TISSUE SPECIFICITY: Preferentially expressed in young leaves, roots and stems. {ECO:0000269|PubMed:15316289, ECO:0000269|PubMed:19054356}. locus:2101135;,locus:2161962; AT3G48360,AT5G63160 - Bric-a-Brac Tramtrack and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains expressed Os01g0908200 protein (Putative BTB and TAZ domain protein) (cDNA clone:J013099J01, full insert sequence) (p0497A05.15 protein) Q8L3R7 Q8L3R7_ORYSJ P0497A05.15 Os01g0908200 B1417F08.32 OsJ_04476 OSNPB_010908200 P0456E05.5 ENOG411DQ8H DDB1A,DDB1B Q9M0V3,O49552,B3H6I9 DDB1A_ARATH,DDB1B_ARATH,B3H6I9_ARATH DNA damage-binding protein 1a (UV-damaged DNA-binding protein 1a) (DDB1a),DNA damage-binding protein 1b (UV-damaged DNA-binding protein 1b) (DDB1b),Damaged DNA binding protein 1A Null: No homozygous mutant plants recovered-J. Chory-2002 FUNCTION: Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes (E2s). Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5, HYH and LAF1. Plays a role in DNA repair by forming with DDB2 the UV-damaged DNA-binding protein complex (UV-DDB). Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex. {ECO:0000269|PubMed:18551167}.,FUNCTION: Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness (By similarity). Plays a role in DNA repair by forming with DDB2 the UV-damaged DNA-binding protein complex (UV-DDB) (By similarity). {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-110314;R-ATH-5696394;R-ATH-5696395;R-ATH-5696400;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-8951664; 6.3.2.19; Hepatitis B (05161),Nucleotide excision repair (03420),Viral carcinogenesis (05203),Ubiquitin mediated proteolysis (04120) 121306,121179,118952 DNA damage-binding protein 1a (UV-damaged DNA-binding protein 1a) (DDB1a),DNA damage-binding protein 1b (UV-damaged DNA-binding protein 1b) (DDB1b),Damaged DNA binding protein 1A Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; red, far-red light phototransduction [GO:0009585],cullin-RING ubiquitin ligase complex [GO:0031461]; nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; embryo development ending in seed dormancy [GO:0009793]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; red, far-red light phototransduction [GO:0009585],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; DNA repair [GO:0006281] locus:2115909;,locus:2127368; AT4G05420,AT4G21100 DNA damage-binding protein DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (OsUV-DDB1),Os05g0592400 protein (Fragment) Q6L4S0,A0A0P0WR82 DDB1_ORYSJ,A0A0P0WR82_ORYSJ DBB1 Os05g0592400 LOC_Os05g51480 OsJ_19757 P0663C08.8,Os05g0592400 OSNPB_050592400 FUNCTION: Required for DNA repair. Binds to DDB2 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair (Probable). May function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex (By similarity). {ECO:0000250|UniProtKB:Q16531, ECO:0000305|PubMed:12711392}. ENOG411DQ8K ATG13B F4J8V5 AT13B_ARATH Autophagy-related protein 13b (AtAPG13b) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. The double mutant plants atg13a-1 and atg13b-2, or atg13a-2 and atg13b-2 are hypersensitive to nitrogen or carbon starvation and show early senescence. {ECO:0000269|PubMed:21984698}. FUNCTION: Involved in autophagy in a nutritional condition dependent manner. The ATG1-ATG13 protein kinase complex regulates downstream events required for autophagosome enclosure and/or vacuolar delivery. Becomes a target of autophagy under nutrient starvation (By similarity). Connects autophagy to plant nutritional status (PubMed:21984698). {ECO:0000250|UniProtKB:Q9SCK0, ECO:0000269|PubMed:21984698}. 69454 Autophagy-related protein 13b (AtAPG13b) ATG1/ULK1 kinase complex [GO:1990316]; autophagosome [GO:0005776]; cytoplasmic vesicle [GO:0031410]; autophagy [GO:0006914]; protein transport [GO:0015031] locus:2094024; AT3G18770 Autophagy-related protein 13 Os11g0162000 protein (Fragment) A0A0P0XZM3 A0A0P0XZM3_ORYSJ Os11g0162000 OSNPB_110162000 ENOG411DQ8M Q9FFN2 GLYT3_ARATH Probable glycosyltransferase At5g03795 (EC 2.4.-.-) FUNCTION: May be involved in cell wall biosynthesis. ARA:AT5G03795-MONOMER; 2.4.-.- 58572 Probable glycosyltransferase At5g03795 (EC 2.4.-.-) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555] locus:1009023450; AT5G03795 glycosyltransferase At5g03795-like Limonene cyclase like protein (Os07g0188700 protein),Os07g0188700 protein (Putative pectin-glucuronyltransferase) (cDNA clone:J033066N03, full insert sequence) Q6Z4E6,Q6Z4E5,Q6Z4E7 Q6Z4E6_ORYSJ,Q6Z4E5_ORYSJ,Q6Z4E7_ORYSJ Os07g0188700 OSJNBb0002L09.8-2 OSJNBb0084L07.20-2 OSNPB_070188700,Os07g0188700 OSJNBb0002L09.8-3 OSJNBb0084L07.20-3 OSNPB_070188700,Os07g0188700 Os07g0188700 OsJ_23384 OSJNBb0002L09.8-1 OSJNBb0084L07.20-1 OSNPB_070188700 ENOG411DQ8N Q9LYG6,A0A1P8BDA4 Q9LYG6_ARATH,A0A1P8BDA4_ARATH At5g11640 (Thioredoxin superfamily protein) (Uncharacterized protein At5g11640) (Uncharacterized protein T22P22_30),Thioredoxin superfamily protein 28803,21261 At5g11640 (Thioredoxin superfamily protein) (Uncharacterized protein At5g11640) (Uncharacterized protein T22P22_30),Thioredoxin superfamily protein integral component of membrane [GO:0016021] locus:2181935; AT5G11640 Inherit from KOG: thioredoxin-related transmembrane protein Os01g0200400 protein (cDNA clone:006-305-H08, full insert sequence) Q5QMZ8 Q5QMZ8_ORYSJ Os01g0200400 B1015E06.8 OSNPB_010200400 ENOG411DQ8A Q3EDL3 Q3EDL3_ARATH At1g02040 (C2H2-type zinc finger family protein) (Uncharacterized protein At1g02040) 36602 At1g02040 (C2H2-type zinc finger family protein) (Uncharacterized protein At1g02040) nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2205583; AT1G02040 zinc finger Os02g0659100 protein (Putative PEThyZPT4-1) (cDNA clone:002-130-B07, full insert sequence),Os04g0552400 protein Q6H672,B9FGH7 Q6H672_ORYSJ,B9FGH7_ORYSJ Os02g0659100 Os02g0659100 OJ1112_F09.36 OsJ_07812 OSNPB_020659100 P0708H12.15,Os04g0552400 OsJ_15712 OSNPB_040552400 ENOG411DQ8C Q1G3Y7,Q8S8I5,Q9XIN5 Q1G3Y7_ARATH,Q8S8I5_ARATH,Q9XIN5_ARATH Nuclear speckle splicing regulatory-like protein (DUF2040),Expressed protein (Nuclear speckle splicing regulatory-like protein (DUF2040)) (Uncharacterized protein At2g27280) (Uncharacterized protein At2g27285),Coiled-coil protein (DUF2040) (Uncharacterized protein At2g27280) 35040,38085,49630 Nuclear speckle splicing regulatory-like protein (DUF2040),Expressed protein (Nuclear speckle splicing regulatory-like protein (DUF2040)) (Uncharacterized protein At2g27280) (Uncharacterized protein At2g27285),Coiled-coil protein (DUF2040) (Uncharacterized protein At2g27280) locus:1009023139;,locus:505006274;,locus:2039620; AT1G55928,AT2G27285,AT2G27280 nuclear speckle splicing regulatory protein 1-like OJ000114_01.13 protein (Os04g0440000 protein),Os04g0440000 protein (Fragment) Q7XQG4,A0A0P0WAI0 Q7XQG4_ORYSJ,A0A0P0WAI0_ORYSJ OJ000114_01.13 Os04g0440000 OSNPB_040440000,Os04g0440000 OSNPB_040440000 ENOG411DQ8B GMI1 A0A1P8BA87,A0A1P8BDG0,A0A1P8BDF3,F4KFS5,A0A1P8BDG4 A0A1P8BA87_ARATH,A0A1P8BDG0_ARATH,A0A1P8BDF3_ARATH,F4KFS5_ARATH,A0A1P8BDG4_ARATH Gamma-irradiation and mitomycin c induced 1,En/Spm-like transposon FUNCTION: Contributes to DNA double-strand break (DSB) repair via somatic homologous recombination. Functions downstream of ATM. {ECO:0000269|PubMed:21481027}. 175448,47786,90435,179125,66781 Gamma-irradiation and mitomycin c induced 1,En/Spm-like transposon double-strand break repair via homologous recombination [GO:0000724] locus:2169799; AT5G24280 NA NA NA NA NA NA NA NA ENOG411DQ8E A0A1P8AT74,A0A1P8AT95,F4I5Z7 A0A1P8AT74_ARATH,A0A1P8AT95_ARATH,F4I5Z7_ARATH p-loop containing nucleoside triphosphate hydrolases superfamily protein 243241,251338,238376 p-loop containing nucleoside triphosphate hydrolases superfamily protein hydrolase activity [GO:0016787]; double-strand break repair [GO:0006302],hydrolase activity [GO:0016787]; poly(U) RNA binding [GO:0008266]; double-strand break repair [GO:0006302] locus:2015596; AT1G16800 Inherit from KOG: tRNA-splicing endonuclease positive NA NA NA NA NA NA NA ENOG411DQ8D EMB1467 Q9FGI6,B9DFQ9 NDUS1_ARATH,B9DFQ9_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) (Protein EMBRYO DEFECTIVE 1467),AT5G37510 protein (NADH-ubiquinone dehydrogenase) Embryo defective; Gametophyte defective (inferred)-D. Meinke-2003 FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized (By similarity). {ECO:0000250}. ARA:AT5G37510-MONOMER;MetaCyc:AT5G37510-MONOMER; R-ATH-6799198; 1.6.5.3; 1.6.99.3 81525,81182 NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (EC 1.6.5.3) (EC 1.6.99.3) (Protein EMBRYO DEFECTIVE 1467),AT5G37510 protein (NADH-ubiquinone dehydrogenase) chloroplast [GO:0009507]; mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; 2 iron, 2 sulfur cluster binding [GO:0051537]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773]; cellular respiration [GO:0045333]; photorespiration [GO:0009853]; response to oxidative stress [GO:0006979],membrane [GO:0016020]; electron carrier activity [GO:0009055]; iron-sulfur cluster binding [GO:0051536]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773] locus:2169871; AT5G37510 NADH dehydrogenase ubiquinone iron-sulfur protein 1 mitochondrial-like NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial, putative, expressed (Os03g0713400 protein) (Putative reductase) (cDNA clone:J023087M21, full insert sequence),Os03g0713400 protein (Fragment) Q8W317,A0A0P0W251,A0A0P0W348 Q8W317_ORYSJ,A0A0P0W251_ORYSJ,A0A0P0W348_ORYSJ Os03g0713400 LOC_Os03g50540 Os03g0713400 OsJ_12335 OSJNBa0014G15.3 OSNPB_030713400,Os03g0713400 OSNPB_030713400 ENOG411DQ8G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prenyltransferase and squalene oxidase repeat Os02g0140200 protein (Fragment),Os02g0140400 protein (Fragment),Terpene cyclase/mutase family member (EC 5.4.99.-),Os11g0562100 protein (Fragment) Q0E423,Q0E421,Q0IS49,A0A0P0Y3B9 Q0E423_ORYSJ,Q0E421_ORYSJ,Q0IS49_ORYSJ,A0A0P0Y3B9_ORYSJ Os02g0140200 Os02g0140200 OSNPB_020140200,Os02g0140400 Os02g0140400 OSNPB_020140400,Os11g0562100 OSNPB_110562100 ENOG411DQ8F PHOX4,PHOX1 F4JTI1,F4IRM4 PHOX4_ARATH,PHOX1_ARATH Protein PHOX4,Protein PHOX1 (Protein MADB1) (Putative myosin adapter B1) DISRUPTION PHENOTYPE: No clumped-chloroplasts phenotype (PubMed:22025705). Phox1 and phox4 double mutants show no clumped-chloroplasts phenotype, but a 46% reduction in root hair growth (PubMed:22025705, PubMed:28096376). Phox1, phox3 and phox4 triple mutants and phox1, phox2, phox3 and phox4 quadruple mutants show a 70% reduction in root hair growth (PubMed:28096376). {ECO:0000269|PubMed:22025705, ECO:0000269|PubMed:28096376}.,DISRUPTION PHENOTYPE: No clumped-chloroplasts phenotype (PubMed:22025705). 31% reduction in root hair growth (PubMed:28096376). Phox1 and phox4 double mutants show no clumped-chloroplasts phenotype, but a 46% reduction in root hair growth (PubMed:22025705, PubMed:28096376). Phox1, phox3 and phox4 triple mutants and phox1, phox2, phox3 and phox4 quadruple mutants show a 70% reduction in root hair growth (PubMed:28096376). {ECO:0000269|PubMed:22025705, ECO:0000269|PubMed:28096376}. FUNCTION: Carboxylate clamp-type tetratricopeptide repeat protein that may act as a potential Hsp90/Hsp70 co-chaperone (PubMed:20856808). Contributes to polar growth of root hairs (PubMed:28096376). {ECO:0000269|PubMed:28096376, ECO:0000305|PubMed:20856808}.,FUNCTION: Carboxylate clamp type tetratricopeptide repeat protein that may act as a potential Hsp90/Hsp70 co-chaperone (PubMed:20856808). Contributes to polar growth of root hairs (PubMed:28096376). {ECO:0000269|PubMed:28096376, ECO:0000305|PubMed:20856808}. 87975,84222 Protein PHOX4,Protein PHOX1 (Protein MADB1) (Putative myosin adapter B1) vacuole [GO:0005773],cytoplasmic vesicle membrane [GO:0030659] locus:2116677;,locus:2059546; AT4G32070,AT2G25290 Heat shock protein 70 (HSP70)-interacting protein NA NA NA NA NA NA NA ENOG411DQ8X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA pfkB family carbohydrate kinase Os10g0465900 protein A0A0N7KRX2 A0A0N7KRX2_ORYSJ Os10g0465900 OSNPB_100465900 ENOG411DQ8Z SBT3.4,SBT3.7,SBT3.2,SBT3.5,SBT3.8,SBT3.3,SBT3.6 F4HPF1,Q9SZY2,Q9MAP4,Q9MAP7,Q9SZY3,Q9MAP5,Q8L7I2,A0A1P8ASH5,Q1PFP8,A0A1P8AMB9,A0A1P8B3T3,A0A1P8ASH6,A0A1P8B3Q4 SBT34_ARATH,SBT37_ARATH,SBT32_ARATH,SBT35_ARATH,SBT38_ARATH,SBT33_ARATH,SBT36_ARATH,A0A1P8ASH5_ARATH,Q1PFP8_ARATH,A0A1P8AMB9_ARATH,A0A1P8B3T3_ARATH,A0A1P8ASH6_ARATH,A0A1P8B3Q4_ARATH Subtilisin-like protease SBT3.4 (EC 3.4.21.-) (Subtilase subfamily 3 member 4) (AtSBT3.4),Subtilisin-like protease SBT3.7 (EC 3.4.21.-) (Subtilase subfamily 3 member 7) (AtSBT3.7),Subtilisin-like protease SBT3.2 (EC 3.4.21.-) (Subtilase subfamily 3 member 2) (AtSBT3.2),Subtilisin-like protease SBT3.5 (EC 3.4.21.-) (Subtilase subfamily 3 member 5) (AtSBT3.5),Subtilisin-like protease SBT3.8 (EC 3.4.21.-) (Subtilase subfamily 3 member 8) (AtSBT3.8),Subtilisin-like protease SBT3.3 (EC 3.4.21.-) (Subtilase subfamily 3 member 3) (AtSBT3.3),Subtilisin-like protease SBT3.6 (EC 3.4.21.-) (Subtilase subfamily 3 member 6) (AtSBT3.6),Subtilase family protein,Subtilisin-like serine endopeptidase family protein (Subtilisin-like serine protease-like protein) DISRUPTION PHENOTYPE: Transient delay during the first day of seed germination and increased length of the primary root. {ECO:0000269|PubMed:24665109}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have enhanced disease susceptibility to the pathogens P.syringae DC3000 and Hyaloperonospora arabidopsidis. {ECO:0000269|PubMed:23818851}. FUNCTION: Serine protease that cleaves the pectin methylesterase 17 (PME17) protein to release the PME17 mature form in the apoplasm. {ECO:0000269|PubMed:24665109}.,FUNCTION: Serine protease that plays a role in the control of the establishment of immune priming and systemic induced resistance. {ECO:0000269|PubMed:23818851}. MISCELLANEOUS: Plants over-expressing SBT3.3 show enhanced disease resistance and enhanced activation of MPK3, MPK4, MPK6, MPK11 and OXI1. {ECO:0000269|PubMed:23818851}. ARA:AT4G10510-MONOMER;,ARA:AT1G32970-MONOMER;,ARA:AT1G32940-MONOMER;,ARA:AT4G10540-MONOMER;,ARA:AT1G32960-MONOMER;,ARA:AT4G10550-MONOMER; 3.4.21.- 82445,83695,79164,82912,83518,83640,83654,77077,20326,76664,77346,64680,75719 Subtilisin-like protease SBT3.4 (EC 3.4.21.-) (Subtilase subfamily 3 member 4) (AtSBT3.4),Subtilisin-like protease SBT3.7 (EC 3.4.21.-) (Subtilase subfamily 3 member 7) (AtSBT3.7),Subtilisin-like protease SBT3.2 (EC 3.4.21.-) (Subtilase subfamily 3 member 2) (AtSBT3.2),Subtilisin-like protease SBT3.5 (EC 3.4.21.-) (Subtilase subfamily 3 member 5) (AtSBT3.5),Subtilisin-like protease SBT3.8 (EC 3.4.21.-) (Subtilase subfamily 3 member 8) (AtSBT3.8),Subtilisin-like protease SBT3.3 (EC 3.4.21.-) (Subtilase subfamily 3 member 3) (AtSBT3.3),Subtilisin-like protease SBT3.6 (EC 3.4.21.-) (Subtilase subfamily 3 member 6) (AtSBT3.6),Subtilase family protein,Subtilisin-like serine endopeptidase family protein (Subtilisin-like serine protease-like protein) extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252],cell wall [GO:0005618]; extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252]; regulation of growth [GO:0040008],extracellular matrix [GO:0031012]; plant-type cell wall [GO:0009505]; proteinaceous extracellular matrix [GO:0005578]; serine-type endopeptidase activity [GO:0004252]; induced systemic resistance [GO:0009682],serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flower buds, developing siliques and mature seeds. {ECO:0000269|PubMed:24665109}. locus:2037915;,locus:2127696;,locus:2037955;,locus:2037895;,locus:2127666;,locus:2037935;,locus:2139182;,locus:2037945; AT1G32950,AT4G10510,AT1G32970,AT1G32940,AT4G10540,AT1G32960,AT4G10550,AT1G32980 subtilase family Os04g0127100 protein (cDNA clone:002-142-F02, full insert sequence),Os09g0530800 protein B7F194,A0A0P0XQ21 B7F194_ORYSJ,A0A0P0XQ21_ORYSJ Os04g0127100 OSNPB_040127100,Os09g0530800 OSNPB_090530800 ENOG411DQ8Q A0A1P8B479,F4JMA6 A0A1P8B479_ARATH,F4JMA6_ARATH DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632) 93826,96026 DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632) DNA-directed 5'-3' RNA polymerase activity [GO:0003899],plasma membrane [GO:0005886]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899] locus:2122068; AT4G35240 DUF630 DUF632 domains containing protein Os09g0547300 protein (cDNA clone:J023110J21, full insert sequence),Os09g0547300 protein,Os08g0551200 protein Q0IZV2,A0A0P0XR99,A0A0P0XJ51 Q0IZV2_ORYSJ,A0A0P0XR99_ORYSJ,A0A0P0XJ51_ORYSJ Os09g0547300 Os09g0547300 OSNPB_090547300,Os09g0547300 OSNPB_090547300,Os08g0551200 OSNPB_080551200 ENOG411DQ8P CST,PIX13 P27450,Q9SII6,F4JN38 CST_ARATH,PIX13_ARATH,F4JN38_ARATH Probable serine/threonine-protein kinase CST (EC 2.7.11.1) (Protein CAST AWAY),Probable serine/threonine-protein kinase PIX13 (EC 2.7.11.1),Protein kinase superfamily protein FUNCTION: Acts as a spatial inhibitor of signaling that modulates abscission zone cell adhesion and expansion. Acts both directly and indirectly by physically interacting with RLK5/HAE and SOBIR1/EVR at the cell surface. {ECO:0000269|PubMed:21628627}.,FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. 2.7.11.1 46340,45552,46411 Probable serine/threonine-protein kinase CST (EC 2.7.11.1) (Protein CAST AWAY),Probable serine/threonine-protein kinase PIX13 (EC 2.7.11.1),Protein kinase superfamily protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; negative regulation of floral organ abscission [GO:0060862],nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; abscission [GO:0009838] locus:2059642;,locus:2127918; AT4G35600,AT2G17220 serine threonine-protein kinase Os02g0118200 protein,Os06g0727400 protein (cDNA clone:J023021O21, full insert sequence),OSJNBa0017B10.2 protein (Os04g0563900 protein) Q6ZH46,Q5Z7P1,Q7XQK6 Q6ZH46_ORYSJ,Q5Z7P1_ORYSJ,Q7XQK6_ORYSJ Os02g0118200 Os02g0118200 OJ1217_F02.5 OsJ_05134 OSNPB_020118200,Os06g0727400 OsJ_22723 OSNPB_060727400 P0017G10.19,OSJNBa0017B10.2 Os04g0563900 OSNPB_040563900 ENOG411DQ8S NRAMP4,NRAMP3,NRAMP2 Q9FN18,Q9SNV9,Q9C6B2 NRAM4_ARATH,NRAM3_ARATH,NRAM2_ARATH Metal transporter Nramp4 (AtNramp4),Metal transporter Nramp3 (AtNramp3),Metal transporter Nramp2 (AtNramp2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but slightly enhanced resistance of root growth in presence of Cd and increased accumulation of Mn and Zn under Fe starvation. {ECO:0000269|PubMed:16270029}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but slightly enhanced resistance of root growth in presence of Cd and increased accumulation of Mn and Zn under Fe starvation. {ECO:0000269|PubMed:10781110, ECO:0000269|PubMed:12787249}. No visible phenotype when grown on regular soil in greenhouse. On agar medium under low Fe supply germination was arrested during first four days. This phenotype was transient since seedlings recovered and cotyledons regained green color. When grown on calcareous soil double mutant seedlings did not green and appeared bleached after 6 days and very few seedlings survived beyond seedling stage with early lethality over 90% (in Fe restrictive alkaline soil conditions).,No obvious phenotype when grown on soil in the greenhouse or in vitro on a solid medium with complete nutrients. In addition no obvious difference in the level of chlorosis was observed under Fe starvation between mutant plants and wild type. FUNCTION: Vacuolar metal transporter involved in intracellular metal homeostasis. Can transport iron (Fe), manganese (Mn) and cadmium (Cd). Regulates metal accumulation under Fe starvation. Acts redundantly with NRAMP3 to mobilize vacuolar Fe and provide sufficient Fe during seed germination. In association with NRAMP3, required for optimal growth and photosynthesis under Mn deficiency. Exports Mn from vacuoles in leaf mesophyll cells, making Mn available for functional photosystem II in chloroplasts. {ECO:0000269|PubMed:10781110, ECO:0000269|PubMed:16270029, ECO:0000269|PubMed:20181755}.,FUNCTION: Vacuolar metal transporter involved in intracellular metal homeostasis. Can transport iron (Fe), manganese (Mn) and cadmium (Cd). Regulates metal accumulation under Fe starvation. Acts redundantly with NRAMP4 to mobilize vacuolar Fe and provide sufficient Fe during seed germination. In association with NRAMP4, required for optimal growth and photosynthesis under Mn deficiency. Exports Mn from vacuoles in leaf mesophyll cells, making Mn available for functional photosystem II in chloroplasts. Involved in basal resistance to the bacterial pathogen E.chrysanthemi. {ECO:0000269|PubMed:10781110, ECO:0000269|PubMed:12787249, ECO:0000269|PubMed:16270029, ECO:0000269|PubMed:19121106, ECO:0000269|PubMed:20181755}.,FUNCTION: Seems to be involved in iron uptake. {ECO:0000250}. R-ATH-1222556;R-ATH-425410;R-ATH-6798695;R-ATH-6803544;R-ATH-917937; 56385,56138,58417 Metal transporter Nramp4 (AtNramp4),Metal transporter Nramp3 (AtNramp3),Metal transporter Nramp2 (AtNramp2) integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; transporter activity [GO:0005215]; defense response to bacterium [GO:0042742]; iron ion homeostasis [GO:0055072]; manganese ion transport [GO:0006828]; positive regulation of reactive oxygen species metabolic process [GO:2000379]; response to iron ion [GO:0010039]; response to nematode [GO:0009624],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; transporter activity [GO:0005215]; defense response to bacterium [GO:0042742]; iron ion homeostasis [GO:0055072]; manganese ion transport [GO:0006828]; positive regulation of reactive oxygen species metabolic process [GO:2000379]; response to bacterium [GO:0009617]; response to zinc ion [GO:0010043],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; ion transport [GO:0006811]; iron ion homeostasis [GO:0055072] TISSUE SPECIFICITY: Expressed in vascular tissues. {ECO:0000269|PubMed:16270029}.,TISSUE SPECIFICITY: Expressed in vascular tissues. {ECO:0000269|PubMed:12787249}. locus:2158242;,locus:2045344;,locus:2036751; AT5G67330,AT2G23150,AT1G47240 Metal transporter Metal transporter Nramp2 (OsNramp2),Os03g0208500 protein Q10Q65,A0A0P0VUJ3 NRAM2_ORYSJ,A0A0P0VUJ3_ORYSJ NRAMP2 Os03g0208500 LOC_Os03g11010 OSJNBa0014O06.13,Os03g0208500 OSNPB_030208500 FUNCTION: Probable metal transporter. {ECO:0000250}. ENOG411DQ8R IDH1 Q8LFC0 IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (EC 1.1.1.41) (IDH-I) (Isocitric dehydrogenase 1) (NAD(+)-specific ICDH 1) FUNCTION: Performs an essential role in the oxidative function of the citric acid cycle. {ECO:0000250}. R-ATH-71403; 1.1.1.41; 1.1.1.41 39627 Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (EC 1.1.1.41) (IDH-I) (Isocitric dehydrogenase 1) (NAD(+)-specific ICDH 1) mitochondrion [GO:0005739]; isocitrate dehydrogenase (NAD+) activity [GO:0004449]; zinc ion binding [GO:0008270]; isocitrate metabolic process [GO:0006102]; tricarboxylic acid cycle [GO:0006099] TISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in roots, stems and leaves. {ECO:0000269|PubMed:16527867}. locus:2122098; AT4G35260 isocitrate dehydrogenase NAD NAD-dependent isocitrate dehydrogenase c;1 (Os04g0479200 protein),NAD-dependent isocitrate dehydrogenase c;2 (Os02g0595500 protein) (Putative NAD-dependent isocitrate dehydrogenase) Q33E21,Q6ZI55 Q33E21_ORYSJ,Q6ZI55_ORYSJ OsIDHc;1 Os04g0479200 OsJ_15196 OSNPB_040479200,OsIDHc;2 Os02g0595500 OJ1126_D09.28 OSNPB_020595500 ENOG411DQ8U CID4,CID3 Q94AM9,Q8L793,F4JEN1,A0A1I9LLC0 CID4_ARATH,CID3_ARATH,F4JEN1_ARATH,A0A1I9LLC0_ARATH Polyadenylate-binding protein-interacting protein 4 (PABP-interacting protein 4) (Poly(A)-binding protein-interacting protein 4) (PAM2-containing protein CID4) (Protein CTC-INTERACTING DOMAIN 4),Polyadenylate-binding protein-interacting protein 3 (PABP-interacting protein 3) (Poly(A)-binding protein-interacting protein 3) (PAM2-containing protein CID3) (Protein CTC-INTERACTING DOMAIN 3),CTC-interacting domain 4 65709,65389,60194,66568 Polyadenylate-binding protein-interacting protein 4 (PABP-interacting protein 4) (Poly(A)-binding protein-interacting protein 4) (PAM2-containing protein CID4) (Protein CTC-INTERACTING DOMAIN 4),Polyadenylate-binding protein-interacting protein 3 (PABP-interacting protein 3) (Poly(A)-binding protein-interacting protein 3) (PAM2-containing protein CID3) (Protein CTC-INTERACTING DOMAIN 3),CTC-interacting domain 4 cytoplasmic stress granule [GO:0010494]; mRNA binding [GO:0003729]; regulation of cytoplasmic mRNA processing body assembly [GO:0010603]; stress granule assembly [GO:0034063],cytoplasmic stress granule [GO:0010494]; RNA binding [GO:0003723]; regulation of cytoplasmic mRNA processing body assembly [GO:0010603]; stress granule assembly [GO:0034063] TISSUE SPECIFICITY: Expressed in cauline leaves, stems, rosette leaves, immature siliques and primary inflorescences. {ECO:0000269|PubMed:15650869}. locus:2088222;,locus:2014330; AT3G14010,AT1G54170 Ctc-interacting domain Os02g0480900 protein (Putative Poly(A)-binding protein binding protein) (cDNA clone:J033068A12, full insert sequence),Os02g0480900 protein (Fragment),Os02g0480900 protein Q6K2L9,A0A0P0VJ21,A0A0P0VJ22 Q6K2L9_ORYSJ,A0A0P0VJ21_ORYSJ,A0A0P0VJ22_ORYSJ P0519B12.23-1 Os02g0480900 OSJNBa0091C16.3-1 OSNPB_020480900,Os02g0480900 OSNPB_020480900 ENOG411DQ8T PCMP-H5 O23169 PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 78026 Pentatricopeptide repeat-containing protein At4g37170 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2115130; AT4G37170 Pentatricopeptide repeat-containing protein Os03g0235200 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J033003F09, full insert sequence) Q10PG4 Q10PG4_ORYSJ LOC_Os03g13230 Os03g0235200 OsJ_10058 OSNPB_030235200 ENOG411DQ8W SDP6 Q9SS48 SDP6_ARATH Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial (EC 1.1.5.3) (Protein SUGAR-DEPENDENT 6) Seedling lethal without exogenous sucrose; Delayed germination-P. Eastmond-2008 FUNCTION: Required for glycerol catabolism and involved in NADH/NAD(+) homeostasis. Essential for postgerminative growth and seedling establishment. {ECO:0000269|PubMed:12586344, ECO:0000269|PubMed:18599644}. MISCELLANEOUS: Plants lacking SDP6 are impaired in gluconeogenesis during postgerminative growth. PATHWAY: Polyol metabolism; glycerol degradation via glycerol kinase pathway; glycerone phosphate from sn-glycerol 3-phosphate (anaerobic route): step 1/1. ARA:AT3G10370-MONOMER;MetaCyc:AT3G10370-MONOMER; R-ATH-1483166;R-ATH-163560; 1.1.5.3 68451 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial (EC 1.1.5.3) (Protein SUGAR-DEPENDENT 6) glycerol-3-phosphate dehydrogenase complex [GO:0009331]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; glycerol-3-phosphate dehydrogenase activity [GO:0004368]; sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity [GO:0052591]; glycerol catabolic process [GO:0019563]; glycerophosphate shuttle [GO:0006127] TISSUE SPECIFICITY: Expressed in germinating seedlings. Also detected in roots, leaves, flowers, developing siliques and germinating seeds. {ECO:0000269|PubMed:12586344}. locus:2076314; AT3G10370 Glycerol-3-phosphate dehydrogenase Os04g0224900 protein (Fragment),Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) Q0JEP5,A0A0P0W7K1 Q0JEP5_ORYSJ,A0A0P0W7K1_ORYSJ Os04g0224900 Os04g0224900 OSNPB_040224900,Os04g0225001 OSNPB_040225001 ENOG411DQ8V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PlsC Os10g0413400 protein A0A0P0XU21 A0A0P0XU21_ORYSJ Os10g0413400 OSNPB_100413400 ENOG411DQ88 Q1JPN7,A0A1P8B137,F4IS56,F4IS57,F4J9G8 Q1JPN7_ARATH,A0A1P8B137_ARATH,F4IS56_ARATH,F4IS57_ARATH,F4J9G8_ARATH At2g31800 (Integrin-linked protein kinase family),Integrin-linked protein kinase family FUNCTION: Functions as a link between plant defense pathways, stress responses and potassium homeostasis. Promotes osmotic stress sensitivity, responses to the bacterial-derived pathogen-associated molecular pattern (PAMP) flg22, and resistance to bacterial pathogens. Promotes the accumulation of POT5/HAK5, a potassium transporter that mediates high-affinity uptake during potassium deficiency. {ECO:0000269|PubMed:27208244}. 53738,54286,54415,54445,54023 At2g31800 (Integrin-linked protein kinase family),Integrin-linked protein kinase family intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; integrin-mediated signaling pathway [GO:0007229]; intracellular signal transduction [GO:0035556]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; integrin-mediated signaling pathway [GO:0007229],cytoplasmic side of plasma membrane [GO:0009898]; endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; innate immune response [GO:0045087]; integrin-mediated signaling pathway [GO:0007229]; intracellular signal transduction [GO:0035556]; protein autophosphorylation [GO:0046777]; response to osmotic stress [GO:0006970],intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; integrin-mediated signaling pathway [GO:0007229]; intracellular signal transduction [GO:0035556] locus:2045258;,locus:2044034;,locus:2080517; AT2G31800,AT2G43850,AT3G59830 Integrin-linked protein kinase Os01g0892800 protein (Putative ankyrin-kinase) (cDNA clone:J023065A22, full insert sequence),Os02g0608500 protein (Putative ankyrin-kinase) (cDNA clone:J013093B21, full insert sequence),Os02g0608500 protein (Fragment),Os01g0892800 protein (Fragment) Q5JLW4,Q6K1X9,A0A0N7KFN2,A0A0P0VBM0 Q5JLW4_ORYSJ,Q6K1X9_ORYSJ,A0A0N7KFN2_ORYSJ,A0A0P0VBM0_ORYSJ Os01g0892800 Os01g0892800 B1078G07.25 OSNPB_010892800,Os02g0608500 OSJNBa0030C08.33 OSNPB_020608500 P0496E03.6,Os02g0608500 OSNPB_020608500,Os01g0892800 OSNPB_010892800 ENOG411DQ81 Q0WPZ6 PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 97746 Pentatricopeptide repeat-containing protein At2g17140 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2827701; AT2G17140 Pentatricopeptide repeat-containing protein Os02g0132100 protein A0A0P0VEJ3 A0A0P0VEJ3_ORYSJ Os02g0132100 OSNPB_020132100 ENOG411DQ83 RAN3,RAN2,RAN4,RAN1 Q8H156,P41917,Q9FLQ3,P41916 RAN3_ARATH,RAN2_ARATH,RAN4_ARATH,RAN1_ARATH GTP-binding nuclear protein Ran-3 (Ras-related nuclear protein 3),GTP-binding nuclear protein Ran-2 (Ras-related nuclear protein 2),GTP-binding nuclear protein Ran-4 (Ras-related nuclear protein 4),GTP-binding nuclear protein Ran-1 (Ras-related nuclear protein 1) FUNCTION: GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity). {ECO:0000250}. RNA transport (03013),Epstein-Barr virus infection (05169),Ribosome biogenesis in eukaryotes (03008),HTLV-I infection (05166) 25080,25062,25594,25276 GTP-binding nuclear protein Ran-3 (Ras-related nuclear protein 3),GTP-binding nuclear protein Ran-2 (Ras-related nuclear protein 2),GTP-binding nuclear protein Ran-4 (Ras-related nuclear protein 4),GTP-binding nuclear protein Ran-1 (Ras-related nuclear protein 1) Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein import into nucleus [GO:0006606]; ribosomal subunit export from nucleus [GO:0000054]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; nuclear envelope [GO:0005635]; nucleolus [GO:0005730]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein import into nucleus [GO:0006606]; response to cadmium ion [GO:0046686]; ribosomal subunit export from nucleus [GO:0000054]; signal transduction [GO:0007165],cytoplasm [GO:0005737]; nucleus [GO:0005634]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein import into nucleus [GO:0006606]; ribosomal subunit export from nucleus [GO:0000054]; signal transduction [GO:0007165],apoplast [GO:0048046]; cell wall [GO:0005618]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein import into nucleus [GO:0006606]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; ribosomal subunit export from nucleus [GO:0000054]; signal transduction [GO:0007165] locus:2161600;,locus:2147715;,locus:2161685;,locus:2147700; AT5G55190,AT5G20020,AT5G55080,AT5G20010 GTP-binding nuclear protein GTP-binding nuclear protein Ran-1 (OsRan1) (Ras-related nuclear protein 1),GTP-binding nuclear protein Ran-2 (OsRan2) (Ras-related nuclear protein 2),GTP-binding nuclear protein Ran-3 (OsRan3) (Ras-related nuclear protein 3) Q7F7I7,Q7GD79,Q69XM7 RAN1_ORYSJ,RAN2_ORYSJ,RAN3_ORYSJ RAN1 TC4 Os01g0611100 LOC_Os01g42530 OsJ_002485 P0046B10.3 P0410E03.34,RAN2 Os05g0574500 LOC_Os05g49890 OJ1268_B08.8 OsJ_018847,RAN3 Os06g0600301 LOC_Os06g39875 OsJ_021038 P0457B11.6 FUNCTION: GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity). {ECO:0000250}. ENOG411DQ82 Q9SK66 NDUA9_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. ARA:AT2G20360-MONOMER;MetaCyc:AT2G20360-MONOMER; R-ATH-6799198; 43936 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial membrane [GO:0016020]; mitochondrial matrix [GO:0005759]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; NADH dehydrogenase activity [GO:0003954]; response to salt stress [GO:0009651]; ubiquinone-6 biosynthetic process [GO:1901006] locus:2039017; AT2G20360 NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9 Cyclin-B1-2 (G2/mitotic-specific cyclin-B1-2) (CycB1;2),Os02g0816800 protein (Putative NADH dehydrogenase),Os02g0800500 protein Q0DWQ7,Q6K6A4,A0A0P0VQZ7 CCB12_ORYSJ,Q6K6A4_ORYSJ,A0A0P0VQZ7_ORYSJ CYCB1-2 Os02g0801300 LOC_Os02g55720,Os02g0816800 Os02g0816800 OJ1136_C12.3 OSNPB_020816800 P0643F09.23,Os02g0800500 OSNPB_020800500 ENOG411DQ85 Q8GX45,A0A1P8B8P1,A0A1P8B8P4,A0A1P8B8Q2,A0A1P8B8P6,F4JQW1 Q8GX45_ARATH,A0A1P8B8P1_ARATH,A0A1P8B8P4_ARATH,A0A1P8B8Q2_ARATH,A0A1P8B8P6_ARATH,F4JQW1_ARATH At4g24380 (Dihydrofolate reductase) (Uncharacterized protein At4g24380/T22A6_210),Dihydrofolate reductase 26399,14503,23779,17604,29500,19194 At4g24380 (Dihydrofolate reductase) (Uncharacterized protein At4g24380/T22A6_210),Dihydrofolate reductase integral component of membrane [GO:0016021] locus:2135922; AT4G24380 Serine hydrolase (FSH1) OSJNBa0086B14.2 protein (Os04g0450100 protein),Os04g0450100 protein (Fragment) Q7XV53,A0A0N7KJ52 Q7XV53_ORYSJ,A0A0N7KJ52_ORYSJ Os04g0450100 OsJ_14990 OSJNBa0086B14.2 OSNPB_040450100,Os04g0450100 OSNPB_040450100 ENOG411DQ84 PCMP-E16 Q9FLZ9 PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350 75960 Pentatricopeptide repeat-containing protein At5g39350 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2175653; AT5G39350 Pentatricopeptide repeat-containing protein Os02g0663900 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6EUH6 Q6EUH6_ORYSJ Os02g0663900 OJ1001_D02.30 OsJ_07836 OSNPB_020663900 ENOG411DQ87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aspartic NA NA NA NA NA NA NA ENOG411DQ86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Spermidine hydroxycinnamoyltransferase 2 (EC 2.3.1.-),Acyl transferase 1 (OsAT1) (EC 2.3.1.-) (Protein SPOTTED LEAF 18),Os10g0133400 protein,Os10g0133500 protein (Transferase family protein, expressed) (cDNA clone:J013088O08, full insert sequence),Os03g0659550 protein (Putative hypersensitivity-related protein) (Transferase family protein, expressed),Os12g0459100 protein,Os11g0268300 protein,Os12g0458700 protein,Os10g0133200 protein Q0ING3,Q7G4G7,A3C298,Q10A61,Q75GN9,A0A0P0YA02,A0A0P0Y199,A0A0P0Y9X0,A0A0P0XRD5 SHT2_ORYSJ,AT1_ORYSJ,A3C298_ORYSJ,Q10A61_ORYSJ,Q75GN9_ORYSJ,A0A0P0YA02_ORYSJ,A0A0P0Y199_ORYSJ,A0A0P0Y9X0_ORYSJ,A0A0P0XRD5_ORYSJ Os12g0458100 LOC_Os12g27254,AT1 SPL18 Os10g0195600 LOC_Os10g11980 OSJNBa0034E15.15,Os10g0133400 OsJ_30629 OSNPB_100133400,LOC_Os10g04429 Os10g0133500 OsJ_30631 OSNPB_100133500,OSJNBb0065L20.24 Os03g0659550 LOC_Os03g45740 OSNPB_030659550,Os12g0459100 OSNPB_120459100,Os11g0268300 OSNPB_110268300,Os12g0458700 OSNPB_120458700,Os10g0133200 OSNPB_100133200 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to spermidine, to produce coumaroyl spermidine. Can use feruloyl-CoA as acyl donor. Contributes to the natural variation of spermidine-based phenolamides in rice cultivars. {ECO:0000269|PubMed:25578276}.,FUNCTION: Involved in defense against pathogens. May contribute to disease resistance by potentiating disease resistance signaling, or producing phytoalexin-like secondary products. {ECO:0000269|PubMed:17273822}. MISCELLANEOUS: The gain-of-function mutants Spl18 (T-DNA tagging) show a lesion mimic phenotype, express constitutively PBZ1, accumulate the phytoalexins momilactone A and sakuranetin, and display enhanced resistance to rice blast fungus (M.oryzae). Plants over-expressing SPL18 show a lesion mimic phenotype and display enhanced resistance to bacterial blight (X. oryzae pv. oryzae). {ECO:0000269|PubMed:17273822}. ENOG411EFFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EAXI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIB0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ATPdependent RNA helicase Os04g0432200 protein A0A0P0WAP7 A0A0P0WAP7_ORYSJ Os04g0432200 OSNPB_040432200 ENOG411EE4H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain NA NA NA NA NA NA NA ENOG411EE4I PIP5K10 Q9LMN1 PI5KA_ARATH Phosphatidylinositol 4-phosphate 5-kinase 10 (AtPIP5K10) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 10) (Diphosphoinositide kinase 10) (PtdIns(4)P-5-kinase 10) Pollen tube growth sensitive to latrunculin B (inhibitor of actin polymerization)-I. Heilmann-2011 ARA:AT1G01460-MONOMER; R-ATH-1660499;R-ATH-6811558;R-ATH-8856828; 2.7.1.68; 2.7.1.68 48549 Phosphatidylinositol 4-phosphate 5-kinase 10 (AtPIP5K10) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 10) (Diphosphoinositide kinase 10) (PtdIns(4)P-5-kinase 10) 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524] locus:2025336; AT1G01460 PIPKc NA NA NA NA NA NA NA ENOG411EE4T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EE48 ACO2 Q41931 ACCO2_ARATH 1-aminocyclopropane-1-carboxylate oxidase 2 (ACC oxidase 2) (AtACO2) (EC 1.14.17.4) DISRUPTION PHENOTYPE: Impaired in the 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated reversion of the ABA-induced inhibition of seed germination. {ECO:0000269|PubMed:20023197}. FUNCTION: Enzyme involved in the ethylene biosynthesis. Required to mediate the 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated reversion of the ABA-induced inhibition of seed germination via endosperm rupture. May promote stem elongation by maximizing the extensibility cells, possibly by activating ethylene biosynthesis, in response to very-long-chain fatty acids (VLCFAs C20:0 to C30:0). {ECO:0000269|PubMed:17993622, ECO:0000269|PubMed:20023197}. PATHWAY: Alkene biosynthesis; ethylene biosynthesis via S-adenosyl-L-methionine; ethylene from S-adenosyl-L-methionine: step 2/2. 1.14.17.4 36183 1-aminocyclopropane-1-carboxylate oxidase 2 (ACC oxidase 2) (AtACO2) (EC 1.14.17.4) cell wall [GO:0005618]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; 1-aminocyclopropane-1-carboxylate oxidase activity [GO:0009815]; copper ion binding [GO:0005507]; L-ascorbic acid binding [GO:0031418]; cellular response to fatty acid [GO:0071398]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; defense response [GO:0006952]; detection of ethylene stimulus [GO:0009727]; ethylene biosynthetic process [GO:0009693]; positive regulation of seed germination [GO:0010030]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in vegetative tissues. Constitutively expressed in leaves and blades. In ethylene exposed etiolated seedlings, localized in cells at the outer side of the exaggerated hook in an ethylene-dependent manner and following an ethylene sensitive pattern. Also detected in the root tip when treated by ethylene. {ECO:0000269|PubMed:10409511, ECO:0000269|PubMed:12972669, ECO:0000269|PubMed:17993622}. locus:2027099; AT1G62380 acc oxidase 2 NA NA NA NA NA NA NA ENOG411EAZQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 domain NA NA NA NA NA NA NA ENOG411DY79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytokinin riboside 5'-monophosphate phosphoribohydrolase Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 (EC 3.2.2.n1) (Protein LONELY GUY-like 4),Os03g0697200 protein Q851C7,A0A0P0W2D9 LOGL4_ORYSJ,A0A0P0W2D9_ORYSJ LOGL4 Os03g0697200 LOC_Os03g49050 OsJ_12214 OSJNBb0021P10.15,Os03g0697200 OSNPB_030697200 FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (By similarity). {ECO:0000250}. ENOG411DY74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Phosducinlike Os01g0590200 protein (cDNA clone:001-010-G09, full insert sequence) (cDNA clone:001-115-B09, full insert sequence),Os01g0590100 protein Q5ZC69,A0A0P0V4Q6 Q5ZC69_ORYSJ,A0A0P0V4Q6_ORYSJ Os01g0590200 OsJ_02422 OSNPB_010590200 P0415C01.21,Os01g0590100 OSNPB_010590100 ENOG411DY77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os03g0149700 protein (Zinc finger, C3HC4 type family protein, expressed) Q8H077 Q8H077_ORYSJ Os03g0149700 LOC_Os03g05560 Os03g0149700 OSJNBb0050N02.14 OSNPB_030149700 ENOG411DY70 IMDH2,IMDH1,IMDH3,IMD1,IMD3 P93832,Q9SA14,Q9FMT1,B9DHH9,A0A1P8AUM8,F4K5H6 LEU32_ARATH,LEU31_ARATH,LEU33_ARATH,B9DHH9_ARATH,A0A1P8AUM8_ARATH,F4K5H6_ARATH 3-isopropylmalate dehydrogenase 2, chloroplastic (3-IPM-DH 2) (IMDH 2) (EC 1.1.1.85) (Beta-IPM dehydrogenase 2),3-isopropylmalate dehydrogenase 1, chloroplastic (3-IPM-DH 1) (IMDH 1) (EC 1.1.1.85) (Beta-IPM dehydrogenase 1),3-isopropylmalate dehydrogenase 3, chloroplastic (3-IPM-DH 3) (IMDH 3) (EC 1.1.1.85) (Beta-IPM dehydrogenase 3),3-isopropylmalate dehydrogenase (EC 1.1.1.85),Isopropylmalate dehydrogenase 1 Elevated free leucine levels; Abnormal glucosinolate composition-S. Chen-2009,Abnormal glucosinolate composition-M. Hirai-2009 FUNCTION: Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.,FUNCTION: Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. {ECO:0000256|RuleBase:RU004445}. PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 3/4.,PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 3/4. {ECO:0000256|RuleBase:RU004445}. ARA:AT5G14200-MONOMER;MetaCyc:AT5G14200-MONOMER; 1.1.1.85; 1.1.1.85 43371,43847,44162,41892,45771,33105 3-isopropylmalate dehydrogenase 2, chloroplastic (3-IPM-DH 2) (IMDH 2) (EC 1.1.1.85) (Beta-IPM dehydrogenase 2),3-isopropylmalate dehydrogenase 1, chloroplastic (3-IPM-DH 1) (IMDH 1) (EC 1.1.1.85) (Beta-IPM dehydrogenase 1),3-isopropylmalate dehydrogenase 3, chloroplastic (3-IPM-DH 3) (IMDH 3) (EC 1.1.1.85) (Beta-IPM dehydrogenase 3),3-isopropylmalate dehydrogenase (EC 1.1.1.85),Isopropylmalate dehydrogenase 1 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3-isopropylmalate dehydrogenase activity [GO:0003862]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; leucine biosynthetic process [GO:0009098],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; thylakoid [GO:0009579]; 3-isopropylmalate dehydrogenase activity [GO:0003862]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; leucine biosynthetic process [GO:0009098]; response to salt stress [GO:0009651],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; 3-isopropylmalate dehydrogenase activity [GO:0003862]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; glucosinolate biosynthetic process [GO:0019761]; leucine biosynthetic process [GO:0009098]; response to salt stress [GO:0009651],cytoplasm [GO:0005737]; 3-isopropylmalate dehydrogenase activity [GO:0003862]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]; leucine biosynthetic process [GO:0009098],oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616] locus:2198893;,locus:2029519;,locus:2174668; AT1G80560,AT1G31180,AT5G14200 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (By similarity) Os03g0655700 protein (Fragment),3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Fragment) A0A0P0W1R4,A0A0P0W1E6 A0A0P0W1R4_ORYSJ,A0A0P0W1E6_ORYSJ Os03g0655700 OSNPB_030655700 FUNCTION: Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. {ECO:0000256|RuleBase:RU004445}. ENOG411DY73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K+ potassium transporter Probable potassium transporter 15 (OsHAK15),Os04g0610700 protein (Fragment) Q7XPL3,A0A0P0WEK0 HAK15_ORYSJ,A0A0P0WEK0_ORYSJ HAK15 Os04g0610700 LOC_Os04g52120 OSJNBa0085I10.13,Os04g0610700 OSNPB_040610700 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DY7M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3537) Os02g0566400 protein (cDNA clone:J023149J24, full insert sequence) Q6YTJ0 Q6YTJ0_ORYSJ Os02g0566400 OSNPB_020566400 P0020C11.42 P0020D05.9 ENOG411DY7N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin assembly protein NA NA NA NA NA NA NA ENOG411DY7H Q9ASX5 Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic (EC 2.7.-.-) ARA:GQT-241-MONOMER; 2.7.-.- 60314 Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic (EC 2.7.-.-) chloroplast [GO:0009507]; plastoglobule [GO:0010287]; ATP binding [GO:0005524]; kinase activity [GO:0016301] locus:2156804; AT5G05200 ABC1 family Os07g0227800 protein (Fragment) A0A0N7KN57 A0A0N7KN57_ORYSJ Os07g0227800 OSNPB_070227800 ENOG411DY7I Q8GW98,F4IIU2 Q8GW98_ARATH,F4IIU2_ARATH Benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632) (Uncharacterized protein At2g34670),Benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632) 63724,78626 Benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632) (Uncharacterized protein At2g34670),Benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632) locus:2061549; AT2G34670 Protein of unknown function (DUF630) Os01g0585600 protein (cDNA clone:J013001B11, full insert sequence),Os01g0585600 protein (Fragment) Q0JLN8,A0A0P0V4S5,A0A0P0V4K1 Q0JLN8_ORYSJ,A0A0P0V4S5_ORYSJ,A0A0P0V4K1_ORYSJ Os01g0585600 Os01g0585600 OSNPB_010585600,Os01g0585600 OSNPB_010585600 ENOG411DY7J AMC1 Q7XJE6 MCA1_ARATH Metacaspase-1 (AtMC1) (EC 3.4.22.-) (Metacaspase 1b) (AtMCP1b) (Protein LSD ONE LIKE 3) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but suppression of hypersensitive cell death response upon infection with avirulent pathogen. {ECO:0000269|PubMed:21097903}. FUNCTION: Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Acts as a positive regulator of cell death. Required for both oxidative stress cell death response and hypersensitive cell death response mediated by immune response. {ECO:0000269|PubMed:15691845, ECO:0000269|PubMed:21097903}. 3.4.22.- 39792 Metacaspase-1 (AtMC1) (EC 3.4.22.-) (Metacaspase 1b) (AtMCP1b) (Protein LSD ONE LIKE 3) cysteine-type endopeptidase activity [GO:0004197]; defense response [GO:0006952]; positive regulation of programmed cell death [GO:0043068] locus:2204798; AT1G02170 Caspase domain Os10g0565100 protein A0A0P0XYC7 A0A0P0XYC7_ORYSJ Os10g0565100 OSNPB_100565100 ENOG411DY7K MED34,RECQL2 Q9FT73,A0A1P8AV97,A0A1P8AV65,A0A1P8AV98,A0A1P8AVA5,A0A1P8AV94 MED34_ARATH,A0A1P8AV97_ARATH,A0A1P8AV65_ARATH,A0A1P8AV98_ARATH,A0A1P8AVA5_ARATH,A0A1P8AV94_ARATH Mediator of RNA polymerase II transcription subunit 34 (ATP-dependent DNA helicase Q-like 2) (EC 3.6.4.12) (RecQ-like protein 2) (AtRecQ2) (AtRecQl2),RECQ helicase L2 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.; FUNCTION: 3'-5' DNA helicase that may play a role in the repair of DNA. Exhibits a magnesium-dependent ATP or dATP-dependent DNA-helicase activity. Can use GTP/dGTP, CTP/dCTP or UTP/dUTP as nucleotide cofactors. Catalyzes Holliday junction branch migration and replication fork regression. Disrupts D-loop structures. 3.6.4.12 79369,58929,62902,63924,72188,83197 Mediator of RNA polymerase II transcription subunit 34 (ATP-dependent DNA helicase Q-like 2) (EC 3.6.4.12) (RecQ-like protein 2) (AtRecQ2) (AtRecQl2),RECQ helicase L2 chromosome [GO:0005694]; cytoplasm [GO:0005737]; mediator complex [GO:0016592]; 3'-5' DNA helicase activity [GO:0043138]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; metal ion binding [GO:0046872]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; double-strand break repair via homologous recombination [GO:0000724]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],ATP binding [GO:0005524]; ATP-dependent helicase activity [GO:0008026]; nucleic acid binding [GO:0003676]; DNA recombination [GO:0006310],ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; nucleic acid binding [GO:0003676]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260],intracellular [GO:0005622]; ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; nucleic acid binding [GO:0003676]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; DNA replication [GO:0006260] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:11058127, ECO:0000269|PubMed:12856935}. locus:2197555; AT1G31360 ATP-dependent DNA helicase ATP-dependent DNA helicase (EC 3.6.4.12) (Fragment),Os11g0708600 protein,Os04g0433800 protein (Fragment) A0A0P0Y5W3,A0A0N7KTF0,A0A0P0WAF3 A0A0P0Y5W3_ORYSJ,A0A0N7KTF0_ORYSJ,A0A0P0WAF3_ORYSJ Os11g0708600 OSNPB_110708600,Os04g0433800 OSNPB_040433800 ENOG411DY7D Q5XV66 Q5XV66_ARATH Oxidoreductase/transition metal ion-binding protein (DUF3531) 34640 Oxidoreductase/transition metal ion-binding protein (DUF3531) locus:2118269; AT4G29400 Protein of unknown function (DUF3531) Os01g0558800 protein (cDNA clone:J013135L15, full insert sequence) Q5JKR3 Q5JKR3_ORYSJ Os01g0558800 Os01g0558800 B1064G04.11 B1144D11.33 OSNPB_010558800 ENOG411DY7E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAP Os12g0167700 protein (Fragment) A0A0P0Y7C3 A0A0P0Y7C3_ORYSJ Os12g0167700 OSNPB_120167700 ENOG411DY7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin N-terminal domain Cyclin-D3-2 (G1/S-specific cyclin-D3-2) (CycD3;2) Q0J3H7 CCD32_ORYSJ CYCD3-2 Os09g0111100 LOC_Os09g02360 OsJ_027234 ENOG411DY7A XTH31 P93046 XTH31_ARATH Xyloglucan endotransglucosylase/hydrolase protein 31 (At-XTH31) (AtXTR8) (XTH-31) (EC 2.4.1.207) (EC 3.2.1.151) DISRUPTION PHENOTYPE: Reduced growth, decreased cell wall xyloglucan content and increased aluminum resistance (PubMed:23204407). No visible phenotype under normal growth conditions (PubMed:23104861). {ECO:0000269|PubMed:23104861, ECO:0000269|PubMed:23204407}. FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Involved in the accumulation of hemicelluloses. Has a high XEH activity and only a slight XET activity in vitro, but the main in planta activity seems to be XET, thus controlling aluminum sensitivity (PubMed:23204407, PubMed:23104861, PubMed:25446234). Acceptor preferences are XXXGol = XXFGol > XXLGol > XLLGol = XLFGol (PubMed:25446234). {ECO:0000269|PubMed:23104861, ECO:0000269|PubMed:23204407, ECO:0000269|PubMed:25446234}. MISCELLANEOUS: In contrast to group 1 and group 2 endotransglucosylase/hydrolase proteins, it may not contain the ligase activity, and may catalyze endohydrolysis xyloglucan polymers only. ARA:AT3G44990-MONOMER; 2.4.1.207; 3.2.1.151 33541 Xyloglucan endotransglucosylase/hydrolase protein 31 (At-XTH31) (AtXTR8) (XTH-31) (EC 2.4.1.207) (EC 3.2.1.151) apoplast [GO:0048046]; cell wall [GO:0005618]; plasma membrane [GO:0005886]; xyloglucan-specific endo-beta-1,4-glucanase activity [GO:0033946]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; cell wall macromolecule catabolic process [GO:0016998]; cell wall organization [GO:0071555]; xyloglucan metabolic process [GO:0010411] DEVELOPMENTAL STAGE: Expressed in germinating seeds from 24 hours after imbibation, and reaches a maximum level at 72 hours. After 96 hours, it then decreases. {ECO:0000269|Ref.1}. TISSUE SPECIFICITY: Predominantly expressed in root (PubMed:11673616, Ref.1). Weakly expressed in influorescence stems (PubMed:11673616). Expressed in root tips and elongation zones, stems, young leaves, flowers and siliques (PubMed:23204407). Expressed in root, hypocotyl, and etiolated whole seedlings (PubMed:23104861). {ECO:0000269|PubMed:11673616, ECO:0000269|PubMed:23104861, ECO:0000269|PubMed:23204407, ECO:0000269|Ref.1}. locus:2075919; AT3G44990 xyloglucan endotransglucosylase hydrolase protein NA NA NA NA NA NA NA ENOG411DY7B GC6 B0F9L4 GOGC6_ARATH Golgin candidate 6 (AtGC6) (Protein MAIGO 4) DISRUPTION PHENOTYPE: Dwarf plants and accumulation of the precursors of the two major storage proteins albumin 2S and globulin 12S in dry seeds. {ECO:0000269|PubMed:20837504}. Dwarf-T. Shimada-2010 FUNCTION: Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. Functions in the anterograde transport of storage protein precursors from the endoplasmic reticulum (ER) to the Golgi complex. {ECO:0000269|PubMed:20837504}. R-ATH-6807878; 101834 Golgin candidate 6 (AtGC6) (Protein MAIGO 4) cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; Golgi stack [GO:0005795]; protein transporter activity [GO:0008565]; ER to Golgi vesicle-mediated transport [GO:0006888]; Golgi vesicle docking [GO:0048211]; membrane fusion [GO:0061025]; post-embryonic development [GO:0009791]; protein exit from endoplasmic reticulum [GO:0032527]; transcytosis [GO:0045056]; vesicle fusion with Golgi apparatus [GO:0048280] locus:2091438; AT3G27530 golgin candidate Os12g0538900 protein (Vesicle tethering family protein, putative, expressed) (cDNA clone:J013091G19, full insert sequence),Os12g0538900 protein (Fragment),Os09g0135100 protein (Fragment) Q2QP84,A0A0P0YAZ5,A0A0N7KQE2 Q2QP84_ORYSJ,A0A0P0YAZ5_ORYSJ,A0A0N7KQE2_ORYSJ Os12g0538900 LOC_Os12g35360 Os12g0538900 OsJ_36378 OSNPB_120538900,Os12g0538900 OSNPB_120538900,Os09g0135100 OSNPB_090135100 ENOG411DY7X F4IHU8 F4IHU8_ARATH ARM repeat superfamily protein 141796 ARM repeat superfamily protein locus:1006230010; AT2G34357 NUC173 domain Os02g0782100 protein (Fragment) A0A0P0VQJ2 A0A0P0VQJ2_ORYSJ Os02g0782100 OSNPB_020782100 ENOG411DY7Y Q9FH65,F4JZ53 Q9FH65_ARATH,F4JZ53_ARATH At5g66230 (Chalcone-flavanone isomerase family protein) (Emb|CAB62645.1) (Uncharacterized protein At5g66230/K2A18_31),Chalcone-flavonone isomerase family protein ARA:GQT-2359-MONOMER; 36433,60106 At5g66230 (Chalcone-flavanone isomerase family protein) (Emb|CAB62645.1) (Uncharacterized protein At5g66230/K2A18_31),Chalcone-flavonone isomerase family protein isomerase activity [GO:0016853],chloroplast stroma [GO:0009570]; chalcone isomerase activity [GO:0045430]; fatty acid binding [GO:0005504]; fatty acid metabolic process [GO:0006631]; flavonoid biosynthetic process [GO:0009813] locus:2156967; AT5G66230 NA NA NA NA NA NA NA NA ENOG411DY7U T8B10_250 F4JBW2,Q9M201,F4JBW0 F4JBW2_ARATH,Q9M201_ARATH,F4JBW0_ARATH Cytochrome P450 family protein,Cytochrome P450 family protein (Uncharacterized protein T8B10_250) 26275,36687,45507 Cytochrome P450 family protein,Cytochrome P450 family protein (Uncharacterized protein T8B10_250) integral component of membrane [GO:0016021],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536] locus:2103326; AT3G60590 NA Os04g0534500 protein A0A0P0WCY5 A0A0P0WCY5_ORYSJ Os04g0534500 OSNPB_040534500 ENOG411DY7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Os02g0749800 protein (Fragment),Mitochondrial transcription termination factor-like (Os02g0749800 protein) Q0DXJ6,Q6Z8L0 Q0DXJ6_ORYSJ,Q6Z8L0_ORYSJ Os02g0749800 Os02g0749800 OSNPB_020749800,Os02g0749800 OsJ_08392 OSNPB_020749800 P0431B06.9 ENOG411DY7W GGB O80642 PGT1_ARATH Geranylgeranyl transferase type-1 subunit beta (EC 2.5.1.59) (Geranylgeranyl transferase type I subunit beta) (AtGGT-IB) (GGTase-I-beta) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have an enhanced response to abscisic acid (ABA)-mediated stomatal closure and increased lateral root formation in response to exogenous auxin. {ECO:0000269|PubMed:16183844}. Enlarged meristems extra floral organsretarded growth and reduced stature,Growth and morphology not significantly different from wild-type. Decreased stomatal width in response to ABA-D. Crowell-2005 FUNCTION: Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X (CaaX). Seems to exclusively prenylate CaaX substrates with leucine in the terminal position. The beta subunit is responsible for peptide-binding. May negatively regulate abscisic acid (ABA) signaling in guard cells and auxin-induced lateral root initiation.; FUNCTION: Negatively regulates ABA signaling in guard cells. in negative regulation of auxin-induced lateral root initiation. ARA:AT2G39550-MONOMER;MetaCyc:AT2G39550-MONOMER; 2.5.1.59 41472 Geranylgeranyl transferase type-1 subunit beta (EC 2.5.1.59) (Geranylgeranyl transferase type I subunit beta) (AtGGT-IB) (GGTase-I-beta) CAAX-protein geranylgeranyltransferase activity [GO:0004662]; metal ion binding [GO:0046872]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein geranylgeranylation [GO:0018344]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to water deprivation [GO:0009414] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:11500541}. locus:2039752; AT2G39550 geranylgeranyl transferase type-1 subunit Os01g0150100 protein A0A0P0UY26 A0A0P0UY26_ORYSJ Os01g0150100 OSNPB_010150100 ENOG411DY7P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Zinc finger FYVE domain containing 26 NA NA NA NA NA NA NA ENOG411DY7Q AVT1C,AVT1B F4IUW3,F4JE35,A0A1P8B0T4 AVT1C_ARATH,AVT1B_ARATH,A0A1P8B0T4_ARATH Amino acid transporter AVT1C (AtAvt1C),Amino acid transporter AVT1B (AtAvt1B),Transmembrane amino acid transporter family protein R-ATH-425393;R-ATH-888590; 60070,58234,54443 Amino acid transporter AVT1C (AtAvt1C),Amino acid transporter AVT1B (AtAvt1B),Transmembrane amino acid transporter family protein integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333],integral component of membrane [GO:0016021] locus:2056118;,locus:2082652; AT2G39130,AT3G54830 amino acid transporter Amino acid transporter-like protein (Os02g0101000 protein),Os02g0101000 protein (Putative amino acid transport protein) (cDNA clone:J033075N18, full insert sequence),Os04g0201800 protein Q6YU96,Q6YU97,A0A0P0W7I9 Q6YU96_ORYSJ,Q6YU97_ORYSJ,A0A0P0W7I9_ORYSJ B1370C05.10-2 Os02g0101000 OSNPB_020101000,B1370C05.10-1 Os02g0101000 OsJ_04987 OSNPB_020101000,Os04g0201800 OSNPB_040201800 ENOG411DY7R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os02g0767600 protein A0A0P0VQ82 A0A0P0VQ82_ORYSJ Os02g0767600 OSNPB_020767600 ENOG411DY7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily Os05g0421900 protein (Putative gibberellin 20-oxidase) Q6L4Y3 Q6L4Y3_ORYSJ OSJNBb0092E21.11 Os05g0421900 OSNPB_050421900 ENOG411DPQI SPS1,SPS2 Q8S948,Q76FS5 SPS1_ARATH,SPS2_ARATH Solanesyl diphosphate synthase 1 (AtSPS1) (EC 2.5.1.85) (All-trans-nonaprenyl-diphosphate synthase 1 (geranylgeranyl-diphosphate specific)),Solanesyl diphosphate synthase 2, chloroplastic (AtSPS2) (EC 2.5.1.85) (All-trans-nonaprenyl-diphosphate synthase 2 (geranylgeranyl-diphosphate specific)) FUNCTION: Involved in the solanesyl diphosphate biosynthesis in the endoplasmic reticulum. This isoprenoid side chain might be then transferred to the mitochondria for the synthesis of ubiquinone-9. Prefers geranylgeranyl diphosphate to farnesyl diphosphate as substrate. No activity with geranyl diphosphate or dimethylallyl diphosphate as substrate. {ECO:0000269|PubMed:12437513, ECO:0000269|PubMed:15653808}.,FUNCTION: Involved in providing solanesyl diphosphate for plastoquinone-9 formation. Prefers geranylgeranyl diphosphate to farnesyl diphosphate as substrate. No activity with geranyl diphosphate or dimethylallyl diphosphate as substrate. {ECO:0000269|PubMed:15653808, ECO:0000269|PubMed:15784989}. ARA:AT1G78510-MONOMER;MetaCyc:AT1G78510-MONOMER;,ARA:AT1G17050-MONOMER;MetaCyc:AT1G17050-MONOMER; 2.5.1.85; 2.5.1.85 44468,46045 Solanesyl diphosphate synthase 1 (AtSPS1) (EC 2.5.1.85) (All-trans-nonaprenyl-diphosphate synthase 1 (geranylgeranyl-diphosphate specific)),Solanesyl diphosphate synthase 2, chloroplastic (AtSPS2) (EC 2.5.1.85) (All-trans-nonaprenyl-diphosphate synthase 2 (geranylgeranyl-diphosphate specific)) endoplasmic reticulum [GO:0005783]; plastid [GO:0009536]; all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity [GO:0052924]; metal ion binding [GO:0046872]; trans-octaprenyltranstransferase activity [GO:0050347]; isoprenoid biosynthetic process [GO:0008299]; photosynthesis [GO:0015979]; plastoquinone biosynthetic process [GO:0010236],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity [GO:0052924]; metal ion binding [GO:0046872]; trans-octaprenyltranstransferase activity [GO:0050347]; isoprenoid biosynthetic process [GO:0008299]; photosynthesis [GO:0015979]; plastoquinone biosynthetic process [GO:0010236] TISSUE SPECIFICITY: Higher expression in leaves than in roots. {ECO:0000269|PubMed:15784989}. locus:2202940;,locus:2020362; AT1G78510,AT1G17050 Solanesyl diphosphate synthase Solanesyl-diphosphate synthase 2, chloroplastic (OsSPS2) (EC 2.5.1.84) (All-trans-nonaprenyl-diphosphate synthase 2 (geranyl-diphosphate specific)),Probable solanesyl-diphosphate synthase 3, chloroplastic (OsSPS3) (EC 2.5.1.84) (Probable all-trans-nonaprenyl-diphosphate synthase 3 (geranyl-diphosphate specific)) (Fragment),Os12g0271700 protein,Os05g0582300 protein (Fragment) Q75HZ9,Q0INZ4,A0A0P0Y8X5,A0A0P0WQS6 SPS2_ORYSJ,SPS3_ORYSJ,A0A0P0Y8X5_ORYSJ,A0A0P0WQS6_ORYSJ SPS2 Os05g0582300 LOC_Os05g50550 OJ1651_G11.10 OsJ_19688 OSJNBb0035N21.17,SPS3 Os12g0271700 LOC_Os12g17320 OsJ_17673,Os12g0271700 OSNPB_120271700,Os05g0582300 OSNPB_050582300 FUNCTION: Involved in providing solanesyl diphosphate for plastoquinone-9 formation. Geranyl diphosphate is the preferred substrate. {ECO:0000269|PubMed:20421194}.,FUNCTION: Involved in providing solanesyl diphosphate for plastoquinone-9 formation. {ECO:0000250}. ENOG411DPQA BETAA-AD Q9LDK9,A0A1P8BB38,F4JXV9 APBLA_ARATH,A0A1P8BB38_ARATH,F4JXV9_ARATH Beta-adaptin-like protein A (At-bA-Ad) (At-betaA-Ad) (AP complex subunit beta-A) (Adaptor protein complex AP subunit beta-A) (Beta-adaptin A) (Clathrin assembly protein complex beta large chain A),Beta-adaptin-like protein FUNCTION: Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (By similarity). {ECO:0000250}.,FUNCTION: Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. {ECO:0000256|PIRNR:PIRNR002291}. R-ATH-432720; 93266,88511,94357 Beta-adaptin-like protein A (At-bA-Ad) (At-betaA-Ad) (AP complex subunit beta-A) (Adaptor protein complex AP subunit beta-A) (Beta-adaptin A) (Clathrin assembly protein complex beta large chain A),Beta-adaptin-like protein clathrin adaptor complex [GO:0030131]; clathrin-coated vesicle membrane [GO:0030665]; Golgi apparatus [GO:0005794]; protein histidine kinase binding [GO:0043424]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],clathrin adaptor complex [GO:0030131]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],AP-4 adaptor complex [GO:0030124]; clathrin adaptor complex [GO:0030131]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2144276; AT5G11490 Beta-adaptin-like protein Os01g0626100 protein (cDNA clone:J013088A19, full insert sequence),Os01g0626200 protein (Fragment) Q0JL39,A0A0P0V5G8 Q0JL39_ORYSJ,A0A0P0V5G8_ORYSJ Os01g0626100 Os01g0626100 OSNPB_010626100,Os01g0626200 OSNPB_010626200 ENOG411DPQY Q941B1 Q941B1_ARATH At1g69520/F10D13_17 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) R-ATH-6798695; 33398 At1g69520/F10D13_17 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) methyltransferase activity [GO:0008168] locus:505006213; AT1G69523 UbiE COQ5 methyltransferase family protein NA NA NA NA NA NA NA ENOG411DPQX E2FE Q8LSZ4 E2FE_ARATH E2F transcription factor-like E2FE (DP-E2F-like protein 1) (E2F-like repressor E2L3) DISRUPTION PHENOTYPE: No visible phenotype, but increased ploidy levels. {ECO:0000269|PubMed:15649366}. Epidermal cells on abaxial surface have increased DNA content. Abnormal ploidy levels-L. De Veylder-2005 FUNCTION: Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. R-ATH-6804116; 45461 E2F transcription factor-like E2FE (DP-E2F-like protein 1) (E2F-like repressor E2L3) nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; DNA endoreduplication [GO:0042023]; negative regulation of DNA endoreduplication [GO:0032876]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected during early S phase. Expressed at both the G1/S and S/G2 transitions, with a peak during G2. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:18787127}. TISSUE SPECIFICITY: Expressed exclusively in mitotically dividing cells. Highly expressed in young leaves and mature flowers. Lower expression in young stalk and in young and mature flowers. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366}. locus:2100444; AT3G48160 E2F transcription factor-like E2FE-like Os06g0245900 protein (Putative transcription factor E2Fe),Os02g0739700 protein (Transcription factor-like) Q654W1,Q6Z5N3 Q654W1_ORYSJ,Q6Z5N3_ORYSJ Os06g0245900 Os06g0245900 OJ1136_C11.2 OSNPB_060245900,Os02g0739700 Os02g0739700 OsJ_08321 OSNPB_020739700 P0684F11.26 ENOG411DPQ9 Q94JW0,Q94K48 DOHH_ARATH,Q94K48_ARATH Deoxyhypusine hydroxylase (DOHH) (EC 1.14.99.29) (Deoxyhypusine dioxygenase) (Deoxyhypusine monooxygenase),ARM repeat superfamily protein (Uncharacterized protein At3g62530) FUNCTION: Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor. {ECO:0000255|HAMAP-Rule:MF_03101}. PATHWAY: Protein modification; eIF5A hypusination. {ECO:0000255|HAMAP-Rule:MF_03101}. ARA:AT3G58180-MONOMER;,ARA:AT3G62530-MONOMER; R-ATH-204626; 1.14.99.29 34092,24503 Deoxyhypusine hydroxylase (DOHH) (EC 1.14.99.29) (Deoxyhypusine dioxygenase) (Deoxyhypusine monooxygenase),ARM repeat superfamily protein (Uncharacterized protein At3g62530) cytosol [GO:0005829]; deoxyhypusine monooxygenase activity [GO:0019135]; metal ion binding [GO:0046872]; peptidyl-lysine modification to peptidyl-hypusine [GO:0008612],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; metal ion binding [GO:0046872]; zinc ion binding [GO:0008270] locus:2085380;,locus:2096059; AT3G58180,AT3G62530 Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine an essential post- translational modification only found in mature eIF-5A factor (By similarity) Deoxyhypusine hydroxylase-A (DOHH-A) (EC 1.14.99.29) (Deoxyhypusine dioxygenase-A) (Deoxyhypusine monooxygenase-A),Deoxyhypusine hydroxylase-B (DOHH-B) (EC 1.14.99.29) (Deoxyhypusine dioxygenase-B) (Deoxyhypusine monooxygenase-B),Os12g0626100 protein (Fragment) Q2QXB3,Q2QLW3,A0A0P0YDC8 DOHH1_ORYSJ,DOHH2_ORYSJ,A0A0P0YDC8_ORYSJ Os12g0163300 LOC_Os12g06620 OsJ_35322,Os12g0626100 LOC_Os12g43100,Os12g0626100 OSNPB_120626100 FUNCTION: Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor. {ECO:0000255|HAMAP-Rule:MF_03101}. ENOG411DPQ8 RPL21E; RPL21F,RPL21A; RPL21C Q9FDZ9,Q43291 RL212_ARATH,RL211_ARATH 60S ribosomal protein L21-2,60S ribosomal protein L21-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 18709,18653 60S ribosomal protein L21-2,60S ribosomal protein L21-1 cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],chloroplast [GO:0009507]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2009410;locus:2206480;,locus:2012275;locus:2024387; AT1G57660AT1G57860;,AT1G09590AT1G09690; 60S ribosomal protein Os03g0141000 protein,Os10g0465800 protein (Fragment) A0A0P0VSV2,A0A0P0XW06 A0A0P0VSV2_ORYSJ,A0A0P0XW06_ORYSJ Os03g0141000 OSNPB_030141000,Os10g0465800 OSNPB_100465800 ENOG411DPQ3 PCMP-E28 Q9SJZ3 PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial Dwarf; Slow growth-M. Hsieh-2010 76714 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial chloroplast [GO:0009507]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2041198; AT2G22410 Pentatricopeptide repeat-containing protein Os10g0400250 protein (Pentatricopeptide, putative) (Putative selenium-binding protein-like) Q94I34 Q94I34_ORYSJ Os10g0400250 LOC_Os10g26070 Os10g0400250 OsJ_31439 OSJNBa0050N08.17 OSNPB_100400250 ENOG411DPQ2 Q5BPV4,Q9M9H0 Q5BPV4_ARATH,Q9M9H0_ARATH Uncharacterized protein,F14O23.14 31475,29739 Uncharacterized protein,F14O23.14 locus:2012996; AT1G71760 NA Os01g0716300 protein A0A0P0V7E8 A0A0P0V7E8_ORYSJ Os01g0716300 OSNPB_010716300 ENOG411DTW9 MQD19.5 Q67YA7,Q94K10,A0A1P8ANS3 Q67YA7_ARATH,Q94K10_ARATH,A0A1P8ANS3_ARATH At5g43720 (Uncharacterized protein At5g43720) (rRNA-processing EFG1-like protein (DUF2361)),At1g04230 (Uncharacterized protein unannotated coding sequence from BAC F19P19) (rRNA-processing EFG1-like protein (DUF2361)),rRNA-processing EFG1-like protein (DUF2361) 37467,37150,37021 At5g43720 (Uncharacterized protein At5g43720) (rRNA-processing EFG1-like protein (DUF2361)),At1g04230 (Uncharacterized protein unannotated coding sequence from BAC F19P19) (rRNA-processing EFG1-like protein (DUF2361)),rRNA-processing EFG1-like protein (DUF2361) nucleolus [GO:0005730]; preribosome, small subunit precursor [GO:0030688]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462],rRNA processing [GO:0006364] locus:2170882;,locus:2018284; AT5G43720,AT1G04230 Uncharacterised conserved protein (DUF2361) Expressed protein (Os03g0797700 protein) (cDNA clone:001-036-B12, full insert sequence) (cDNA clone:J013001D18, full insert sequence) Q7Y1H6 Q7Y1H6_ORYSJ OSJNBa0094F01.10 LOC_Os03g58340 Os03g0797700 OSNPB_030797700 ENOG411DTW8 MUK11.18,F26K24.5 Q9SI86,Q9FMC4,Q9SF22,A0A1P8BBH2 Q9SI86_ARATH,Q9FMC4_ARATH,Q9SF22_ARATH,A0A1P8BBH2_ARATH Chaperone (Uncharacterized protein At2g10560),Splicing factor 3A subunit,F26K24.5 protein (Structural maintenance of chromosomes flexible hinge domain protein) 32228,88266,79174,71277 Chaperone (Uncharacterized protein At2g10560),Splicing factor 3A subunit,F26K24.5 protein (Structural maintenance of chromosomes flexible hinge domain protein) mitochondrion [GO:0005739] locus:2063550;,locus:2175493;,locus:2081511; AT2G10560,AT5G04860,AT3G11760 expressed protein Expressed protein (Os03g0649000 protein),Expressed protein (Os12g0620600 protein) (cDNA clone:002-117-A06, full insert sequence) Q10G00,Q2QM21 Q10G00_ORYSJ,Q2QM21_ORYSJ Os03g0649000 LOC_Os03g44670 OSNPB_030649000,Os12g0620600 LOC_Os12g42570 Os12g0620600 OSNPB_120620600 ENOG411DTW1 Q8GXH2,O22957,A0A1P8AUI7,F4IGU7,F4JB86 Q8GXH2_ARATH,O22957_ARATH,A0A1P8AUI7_ARATH,F4IGU7_ARATH,F4JB86_ARATH Apoptosis inhibitory protein 5 (API5) (Uncharacterized protein At1g29030) (Uncharacterized protein At1g29030/F28N24_25),Apoptosis inhibitory protein 5 (API5) (At2g34040) (Expressed protein),Apoptosis inhibitory protein 5 (API5),Apoptosis inhibitor 62280,61644,59801,50049,92164 Apoptosis inhibitory protein 5 (API5) (Uncharacterized protein At1g29030) (Uncharacterized protein At1g29030/F28N24_25),Apoptosis inhibitory protein 5 (API5) (At2g34040) (Expressed protein),Apoptosis inhibitory protein 5 (API5),Apoptosis inhibitor cytosol [GO:0005829],cytosol [GO:0005829]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729] locus:2029994;,locus:2055481;,locus:2090699; AT1G29030,AT2G34040,AT3G19515 apoptosis inhibitor Apoptosis inhibitor 5-like protein API5 (Protein APOPTOSIS INHIBITOR 5) Q6Z6S1 API5_ORYSJ API5 Os02g0313400 LOC_Os02g20930 OsJ_06432 P0705A04.11 DISRUPTION PHENOTYPE: Male sterility due to lack of tapetal programmed cell death (PCD) and degeneration, leading to defects in formation of male gametophytes. {ECO:0000269|PubMed:21467577}. FUNCTION: Putative anti-apoptotic factor involved in the regulation of tapetal programmed cell death (PCD) and degeneration during anther development. Interacts directly with the DEAD-box ATP-dependent RNA helicases AIP1 and AIP2 that form dimers and bind the promoter region of the cysteine protease CP1 involved in tapetum PCD. {ECO:0000269|PubMed:21467577}. ENOG411DTW0 Q9M2Z5 FBL53_ARATH F-box/LRR-repeat protein At3g48880 36062 F-box/LRR-repeat protein At3g48880 locus:2099443; AT3G48880 f-box family NA NA NA NA NA NA NA ENOG411DTW3 Q8RWU2,A0A1P8ASX9 Q8RWU2_ARATH,A0A1P8ASX9_ARATH Immunoglobulin (Uncharacterized protein At1g50120),Immunoglobulin 59105,62431 Immunoglobulin (Uncharacterized protein At1g50120),Immunoglobulin cytosol [GO:0005829]; Golgi membrane [GO:0000139]; RIC1-RGP1 guanyl-nucleotide exchange factor complex [GO:0034066]; Rab GTPase binding [GO:0017137]; Rab guanyl-nucleotide exchange factor activity [GO:0017112]; retrograde transport, endosome to Golgi [GO:0042147] locus:2031065; AT1G50120 Rgp1 Os06g0618600 protein (Fragment) Q0DAX4 Q0DAX4_ORYSJ Os06g0618600 Os06g0618600 OSNPB_060618600 ENOG411DTW2 GATL1,GATL2 Q9LN68,Q9S7G2 GATL1_ARATH,GATL2_ARATH Probable galacturonosyltransferase-like 1 (EC 2.4.1.-) (Protein GAOLAOZHUANGREN 1) (Protein PARVUS),Probable galacturonosyltransferase-like 2 (EC 2.4.1.-) DISRUPTION PHENOTYPE: Dwarf phenotype. Severe reduction in the mechanical strength of stems and collapsed vessels. Reduced fertility. {ECO:0000269|PubMed:15010604, ECO:0000269|PubMed:15564529, ECO:0000269|PubMed:17991630}. At flowering the mutants achieve a rosette diameter ca. 30% that of wild-type plants and an inflorescence stem height ca. 20% that of wild-type plants,Flowers are also significantly smaller than wild-type ones and have anthers that are almost completely non-dehiscent and fail to extend above the level of the stigma in fully open flowers.,No differences with respect to the frequency or timing of germination on soil either in full light or in total darkness and the rate and extent of hypocotyl elongation in dark-grown parvus seedlings are indistinguishable from that of wild-type seedlings.,Pollen grains from mutant anthers showed less than 0.5% germination in vitro in pollen growth medium compared with 7% germination for wild-type Ler pollen.,Seed set is greatly reduced in parvus plants and most siliques either fail to develop or contain few (3-10) seeds.,The phenotype of the parvus mutant is almost indistinguishable from that of wild-type plants when grown in vitro on agar. However when grown in soil parvus mutants are distinguished from wild-type plants after about 3 weeks due to their slightly narrower darker green leaves.,pavement cells stomatal guard cells and trichomes on the adaxial and abaxial surface of mature mutant leaves are morphologically indistinguishable from those of wild-type leaves but are smaller in the parvus mutant (ca. 60% of wild type) Small rosette; Short, fragile inflorescence stems-Z. Ye-2007 FUNCTION: Required for the biosynthesis of the tetrasaccharide primer sequence, beta-D-Xyl-(1,3)-alpha-l-Rha-(1,2)-alpha-D-GalA-(1,4)-D-Xyl, located at the reducing end of glucuronoxylan. Might catalyze the transfer of the reducing Xyl residue onto a protein acceptor in the endoplasmic reticulum, which is then transported to the Golgi where the subsequent additions of sugar residues take place. {ECO:0000269|PubMed:15010604, ECO:0000269|PubMed:15564529, ECO:0000269|PubMed:17991630}.,FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}. MISCELLANEOUS: The name gaolaozhuangren came from a group of small people in a modern Chinese novel. PATHWAY: Glycan metabolism; pectin biosynthesis. 2.4.1.- 39020,38775 Probable galacturonosyltransferase-like 1 (EC 2.4.1.-) (Protein GAOLAOZHUANGREN 1) (Protein PARVUS),Probable galacturonosyltransferase-like 2 (EC 2.4.1.-) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall thickening [GO:0052386]; glucuronoxylan biosynthetic process [GO:0010417]; leaf development [GO:0048366]; multicellular organism reproduction [GO:0032504]; pectin biosynthetic process [GO:0045489]; xylem and phloem pattern formation [GO:0010051],Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]; cell wall organization [GO:0071555]; pectin biosynthetic process [GO:0045489]; polysaccharide biosynthetic process [GO:0000271] TISSUE SPECIFICITY: Expressed in stems, leaves, flowers, siliques and roots. Detected in fibers and xylem cells undergoing secondary wall thickening. {ECO:0000269|PubMed:15010604, ECO:0000269|PubMed:15564529, ECO:0000269|PubMed:17991630}. locus:2016432;,locus:2101724; AT1G19300,AT3G50760 Galacturonosyltransferase-like Hexosyltransferase (EC 2.4.1.-) Q10F74 Q10F74_ORYSJ Os03g0678800 LOC_Os03g47530 Os03g0678800 OsJ_12101 OSNPB_030678800 ENOG411DTW5 EMB2745 Q9FIX3 PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 (Protein EMBRYO DEFECTIVE 2745) Embryo defective; Cotyledon-D. Meinke-2003 84274 Pentatricopeptide repeat-containing protein At5g39710 (Protein EMBRYO DEFECTIVE 2745) mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2164910; AT5G39710 Pentatricopeptide repeat-containing protein Os06g0152500 protein A0A0P0WT54 A0A0P0WT54_ORYSJ Os06g0152500 OSNPB_060152500 ENOG411DTW4 CCR4-2,CCR4-1 Q9M2F8,Q8W0Z9 CCR4B_ARATH,CCR4A_ARATH Carbon catabolite repressor protein 4 homolog 2 (CCR4 homolog 2) (EC 3.1.13.4),Carbon catabolite repressor protein 4 homolog 1 (CCR4 homolog 1) (EC 3.1.13.4) FUNCTION: Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. {ECO:0000250}. 3.1.13.4 67053,66761 Carbon catabolite repressor protein 4 homolog 2 (CCR4 homolog 2) (EC 3.1.13.4),Carbon catabolite repressor protein 4 homolog 1 (CCR4 homolog 1) (EC 3.1.13.4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; P-body [GO:0000932]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of transcription, DNA-templated [GO:0006355]; starch biosynthetic process [GO:0019252]; sucrose biosynthetic process [GO:0005986]; transcription, DNA-templated [GO:0006351] locus:2076446;,locus:2076426; AT3G58580,AT3G58560 Carbon catabolite repressor protein 4 homolog Endonuclease/Exonuclease/phosphatase family protein, expressed (Os03g0166800 protein),Endonuclease/exonuclease/phosphatase family protein, putative, expressed (Os10g0412100 protein),Os10g0412100 protein (Fragment),Os03g0166800 protein (Fragment) Q10R99,Q338D5,A0A0P0XUJ9,A0A0P0VTH5,A0A0P0XU42 Q10R99_ORYSJ,Q338D5_ORYSJ,A0A0P0XUJ9_ORYSJ,A0A0P0VTH5_ORYSJ,A0A0P0XU42_ORYSJ LOC_Os03g07080 Os03g0166800 OsJ_09546 OSNPB_030166800,LOC_Os10g27230 Os10g0412100 OSNPB_100412100,Os10g0412100 OSNPB_100412100,Os03g0166800 OSNPB_030166800 ENOG411DTW7 TFB2 Q680U9,F4JND0,F4JNC9 TFB2_ARATH,F4JND0_ARATH,F4JNC9_ARATH RNA polymerase II transcription factor B subunit 2 (General transcription and DNA repair factor IIH subunit TFB2) (AtTFB2) (TFIIH subunit TFB2),RNA polymerase II transcription factor B subunit 2 FUNCTION: Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. {ECO:0000250|UniProtKB:Q92759}.,FUNCTION: Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. {ECO:0000256|RuleBase:RU364024}. R-ATH-113418;R-ATH-5696395;R-ATH-5696400;R-ATH-674695;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648;R-ATH-72086;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042;R-ATH-77075; 52070,55545,53365 RNA polymerase II transcription factor B subunit 2 (General transcription and DNA repair factor IIH subunit TFB2) (AtTFB2) (TFIIH subunit TFB2),RNA polymerase II transcription factor B subunit 2 core TFIIH complex [GO:0000439]; ATP-dependent DNA helicase activity [GO:0004003]; nucleotide-excision repair [GO:0006289]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],core TFIIH complex [GO:0000439]; holo TFIIH complex [GO:0005675]; ATP-dependent DNA helicase activity [GO:0004003]; double-stranded DNA binding [GO:0003690]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; nucleotide-excision repair [GO:0006289]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; transcription, DNA-templated [GO:0006351] locus:2130439; AT4G17020 general transcription factor IIH subunit RNA polymerase II transcription factor B subunit 2 Q7XKD9 Q7XKD9_ORYSJ OSJNBb0017I01.15 Os04g0680000 OSNPB_040680000 FUNCTION: Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module CAK controls the initiation of transcription. {ECO:0000256|RuleBase:RU364024}. ENOG411DTW6 NAP1;2,NAP1;1,NAP1;3,NAP1:2,NAP1:1 Q9ZUP3,Q9SZI2,Q94K07,F4ISI7,B3H684,A8MRK6 NAP1B_ARATH,NAP1A_ARATH,NAP1C_ARATH,F4ISI7_ARATH,B3H684_ARATH,A8MRK6_ARATH Nucleosome assembly protein 1;2 (AtNAP1;2) (Nucleosome/chromatin assembly factor group A2),Nucleosome assembly protein 1;1 (AtNAP1;1) (Nucleosome/chromatin assembly factor group A1),Nucleosome assembly protein 1;3 (AtNAP1;3) (Nucleosome/chromatin assembly factor group A3),Nucleosome assembly protein 12,Nucleosome assembly protein11 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19228338, ECO:0000269|PubMed:19825649, ECO:0000269|PubMed:22534127}.,DISRUPTION PHENOTYPE: No visible phenotype (PubMed:19228338). Enlarged plants early in the development but reduced plants in size in a later stage (PubMed:17041028). {ECO:0000269|PubMed:17041028, ECO:0000269|PubMed:19228338, ECO:0000269|PubMed:19825649, ECO:0000269|PubMed:22534127}.,DISRUPTION PHENOTYPE: No visible phenotype. Exhibits hyposensitive response to abscisic acid (ABA) with defects in stomata closure, and a decreased tolerance to salt stress. {ECO:0000269|PubMed:19228338, ECO:0000269|PubMed:19825649, ECO:0000269|PubMed:22534127}. Increased sensitivity to UV-C radiation. FUNCTION: May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). May function in nucleotide excision repair (NER). Involved in somatic homologous recombination. {ECO:0000250, ECO:0000269|PubMed:19228338, ECO:0000269|PubMed:22534127}.,FUNCTION: May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Contributes to the regulation of cell proliferation and cell expansion. May function in nucleotide excision repair (NER). Involved in somatic homologous recombination. {ECO:0000250, ECO:0000269|PubMed:17041028, ECO:0000269|PubMed:22534127}.,FUNCTION: May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). May function in nucleotide excision repair (NER). Involved in somatic homologous recombination. Could be involved in response to abscisic acid (ABA) and to salt stress. {ECO:0000250, ECO:0000269|PubMed:19228338, ECO:0000269|PubMed:19825649, ECO:0000269|PubMed:22534127}. MISCELLANEOUS: Triple mutant nap1;1-nap1;2-nap1;3 has no obvious visible phenotype but exhibits hypersensitivity to DNA damage after UV-radiation, affected transcription of NER related genes (PubMed:19228338), slight hypersensitive response to abscisic acid (ABA) in seedling growth (PubMed:19825649) and impaired somatic homologous recombination (PubMed:22534127). {ECO:0000305|PubMed:19228338, ECO:0000305|PubMed:19825649, ECO:0000305|PubMed:22534127}. 43543,42997,43294,42847,41608,42975 Nucleosome assembly protein 1;2 (AtNAP1;2) (Nucleosome/chromatin assembly factor group A2),Nucleosome assembly protein 1;1 (AtNAP1;1) (Nucleosome/chromatin assembly factor group A1),Nucleosome assembly protein 1;3 (AtNAP1;3) (Nucleosome/chromatin assembly factor group A3),Nucleosome assembly protein 12,Nucleosome assembly protein11 cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; histone binding [GO:0042393]; identical protein binding [GO:0042802]; DNA mediated transformation [GO:0009294]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; response to cadmium ion [GO:0046686]; somatic cell DNA recombination [GO:0016444],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; histone binding [GO:0042393]; cell differentiation [GO:0030154]; cell proliferation [GO:0008283]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; identical protein binding [GO:0042802]; DNA mediated transformation [GO:0009294]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444],nucleus [GO:0005634]; nucleosome assembly [GO:0006334] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17122067}. locus:2050424;,locus:2120785;,locus:2164595; AT2G19480,AT4G26110,AT5G56950 Nucleosome assembly protein Nucleosome assembly protein 1;2 (OsNAP1;2) (Nucleosome assembly protein 1-like 2) (OsNAP1_L2),Nucleosome assembly protein 1-like 4,Nucleosome assembly protein 1;1 (OsNAP1;1) (Nucleosome assembly protein 1-like 1) (OsNAP1_L1),Nucleosome assembly protein 1;3 (OsNAP1;3) (Nucleosome assembly protein 1-like 3) (OsNAP1_L3),Os01g0711800 protein (Fragment),Os05g0235600 protein (Fragment),Os06g0611700 protein Q53WK4,B9FU45,Q5VND6,A2ZX50,A0A0P0V7A1,A0A0N7KKD8,A0A0P0WYR0 NAP1B_ORYSJ,NAP1D_ORYSJ,NAP1A_ORYSJ,NAP1C_ORYSJ,A0A0P0V7A1_ORYSJ,A0A0N7KKD8_ORYSJ,A0A0P0WYR0_ORYSJ NAP1;2 NAP1_L2 Os05g0539700 LOC_Os05g46230 OsJ_19377 OSJNBa0052K01.18,Os06g0611700 LOC_Os06g40920 OsJ_21957 P0429G06.8 P0490F09.44,NAP1;1 NAP1_L1 Os06g0149400 LOC_Os06g05660 OsJ_20136 P0624B04.18 P0710H01.4,NAP1;3 NAP1_L3 Os01g0711800 LOC_Os01g51450 OsJ_03221,Os01g0711800 OSNPB_010711800,Os05g0235600 OSNPB_050235600,Os06g0611700 OSNPB_060611700 FUNCTION: May modulate chromatin structure by regulation of nucleosome assembly/disassembly. {ECO:0000250}. ENOG411DTWI BSMT1,NAMT1 Q6XMI3,Q9FJZ6,Q0WL44,F4JW90,A0A1P8BE96,F4JW89,A0A1P8BC09,A0A1P8BBZ4 BSMT1_ARATH,Q9FJZ6_ARATH,Q0WL44_ARATH,F4JW90_ARATH,A0A1P8BE96_ARATH,F4JW89_ARATH,A0A1P8BC09_ARATH,A0A1P8BBZ4_ARATH Salicylate/benzoate carboxyl methyltransferase (Benzoate O-methyltransferase) (EC 2.1.1.273) (S-adenosyl-L-methionine:benzoic acid carboxyl methyltransferase) (S-adenosyl-L-methionine:salicylate acid carboxyl methyltransferase) (SABATH methyltransferase) (Salicylate carboxymethyltransferase) (EC 2.1.1.274),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein DISRUPTION PHENOTYPE: Loss of accumulation of methyl salicylate upon pathogen infection, no accumulation of salicylic acid or its glucoside in uninoculated leaves and no development of systemic acquired resistance. Increased attractivity to parasitoids. {ECO:0000269|PubMed:19669626, ECO:0000269|PubMed:19958141, ECO:0000269|PubMed:20407809}. Low MeSA levels; Susceptible to parasitic wasps-M. Dicke-2010 FUNCTION: Methyltransferase involved in the biosynthesis of methylsalicylate in response to stresses. Utilizes salicylic acid (SA) more efficiently than benzoic acid (BA). Can also use anthranilic acid and m-hydroxybenzoic acid as substrate. {ECO:0000269|PubMed:14617060, ECO:0000269|PubMed:19669626, ECO:0000269|PubMed:19958141, ECO:0000269|PubMed:20407809}. MetaCyc:AT3G11480-MONOMER;,ARA:AT5G66430-MONOMER; 2.1.1.273;2.1.1.274; 2.1.1.273; 2.1.1.274 43365,40034,47262,43253,45927,45180,44423,36376 Salicylate/benzoate carboxyl methyltransferase (Benzoate O-methyltransferase) (EC 2.1.1.273) (S-adenosyl-L-methionine:benzoic acid carboxyl methyltransferase) (S-adenosyl-L-methionine:salicylate acid carboxyl methyltransferase) (SABATH methyltransferase) (Salicylate carboxymethyltransferase) (EC 2.1.1.274),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2-phytyl-1,4-naphthoquinone methyltransferase activity [GO:0052624]; metal ion binding [GO:0046872]; S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity [GO:0080150]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; defense response [GO:0006952]; response to other organism [GO:0051707]; response to wounding [GO:0009611],methyltransferase activity [GO:0008168],methyltransferase activity [GO:0008168]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Expressed in flowers and at lower levels in leaves and stems. Hardly detected in roots and siliques. Expressed in the sepals and the leaf trichomes and hydathodes. {ECO:0000269|PubMed:14617060}. locus:2080747;,locus:2154845;,locus:2179929;,locus:2179969; AT3G11480,AT5G66430,AT5G04370,AT5G04380 carboxyl methyltransferase Os11g0260600 protein,Os02g0719600 protein (Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase),Os11g0257200 protein (SAM dependent carboxyl methyltransferase) (SAM dependent carboxyl methyltransferase family protein),Os11g0256900 protein,Os11g0256600 protein (SAM dependent carboxyl methyltransferase) (SAM dependent carboxyl methyltransferase family protein),Os11g0259700 protein,Os11g0260100 protein (SAM dependent carboxyl methyltransferase),Os06g0313320 protein (Fragment),Os06g0244000 protein (Fragment),Os11g0259800 protein,Os06g0243400 protein,Os06g0242900 protein (Fragment),Os11g0257700 protein (Fragment),Os06g0311800 protein,Os11g0258300 protein,Os06g0243801 protein B9FWJ7,Q6ZI02,Q53L40,C7J9B3,Q53L31,B9FNY9,Q53L02,A0A0P0WVZ1,A0A0P0WV01,A0A0P0Y190,A0A0P0WUP8,A0A0P0WUI3,A0A0P0Y0R4,A0A0P0WW20,A0A0N7KSQ6,A0A0P0WUX5 B9FWJ7_ORYSJ,Q6ZI02_ORYSJ,Q53L40_ORYSJ,C7J9B3_ORYSJ,Q53L31_ORYSJ,B9FNY9_ORYSJ,Q53L02_ORYSJ,A0A0P0WVZ1_ORYSJ,A0A0P0WV01_ORYSJ,A0A0P0Y190_ORYSJ,A0A0P0WUP8_ORYSJ,A0A0P0WUI3_ORYSJ,A0A0P0Y0R4_ORYSJ,A0A0P0WW20_ORYSJ,A0A0N7KSQ6_ORYSJ,A0A0P0WUX5_ORYSJ Os11g0260600 OsJ_23794 OSNPB_110260600,Os02g0719600 Os02g0719600 OJ1008_D06.10 OsJ_08167 OSNPB_020719600,LOC_Os11g15060 Os11g0257200 OsJ_13602 OSNPB_110257200,Os11g0256900 OSNPB_110256900,Os11g0256600 LOC_Os11g15030 OsJ_13604 OSNPB_110256600,Os11g0259700 OsJ_18130 OSNPB_110259700,Os11g0260100 LOC_Os11g15340 Os11g0260100 OsJ_18325 OSNPB_110260100,Os06g0313320 OSNPB_060313320,Os06g0244000 OSNPB_060244000,Os11g0259800 OSNPB_110259800,Os06g0243400 OSNPB_060243400,Os06g0242900 OSNPB_060242900,Os11g0257700 OSNPB_110257700,Os06g0311800 OSNPB_060311800,Os11g0258300 OSNPB_110258300,Os06g0243801 OSNPB_060243801 ENOG411DTWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os01g0214600 protein (Putative esterase) Q5QNJ0 Q5QNJ0_ORYSJ Os01g0214600 OSJNBa0038J17.33 OSNPB_010214600 P0515G01.11 ENOG411DTWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein SET DOMAIN GROUP Os07g0471100 protein (SET-domain transcriptional regulator family-like protein) Q8L459 Q8L459_ORYSJ OJ1103_E04.112 P0675B10.102 Os07g0471100 OSNPB_070471100 ENOG411DTWM EMB1923 Q9M0I6 Q9M0I6_ARATH At4g28210 (Embryo defective 1923) (Uncharacterized protein AT4g28210) Embryo defective; Cotyledon-D. Meinke-2003 38340 At4g28210 (Embryo defective 1923) (Uncharacterized protein AT4g28210) integral component of membrane [GO:0016021]; response to cold [GO:0009409] locus:2123688; AT4G28210 NA NA NA NA NA NA NA NA ENOG411DTWN PYD1 Q9LVI9 DPYD_ARATH Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic (DHPDH) (DPD) (EC 1.3.1.2) (Dihydroorotate dehydrogenase-like protein) (Dihydrothymine dehydrogenase) (Dihydrouracil dehydrogenase) (Protein PYRIMIDINE 1) DISRUPTION PHENOTYPE: No visible phenotype, but impaired degradation of both thymine and uracil (PubMed:19413687, PubMed:21865177). Slower germination and 2 days delay in seedling development (PubMed:21865177). {ECO:0000269|PubMed:19413687, ECO:0000269|PubMed:21865177}. The pyd1-2 mutant has a wild-type appearance under normal growth conditions. Transcript levels for several genes involved in de novo pyrimidine biosynthesis are up-regulated in pyrd1-1 mutants. Transcripts for salvage pathway enzymes are also altered. Pyrimidine nucleotide and uridine levels are not changed in the mutant but uracil levels are increased. The mutant has about a 40% decrease in uracil catabolism. These mutants can grow when uracil is provided as a sole nitrogen source.,The mutant has a wild-type appearance under normal growth conditions. Pyrimidine nucleotide and uridine levels are not changed in the mutant but uracil levels are increased. These mutants can grow when uracil is provided as a sole nitrogen source. FUNCTION: Involved in pyrimidine base degradation. Catalyzes the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate and the reduction of thymine to 5,6-dihydrothymine (DHT). Involved in the recycling of nitrogen from nucleobases to general nitrogen metabolism. {ECO:0000269|PubMed:19413687, ECO:0000269|PubMed:21865177}. PATHWAY: Amino-acid biosynthesis; beta-alanine biosynthesis. {ECO:0000305}. ARA:AT3G17810-MONOMER;MetaCyc:AT3G17810-MONOMER; R-ATH-73621; 1.3.1.2 46847 Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic (DHPDH) (DPD) (EC 1.3.1.2) (Dihydroorotate dehydrogenase-like protein) (Dihydrothymine dehydrogenase) (Dihydrouracil dehydrogenase) (Protein PYRIMIDINE 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; dihydropyrimidine dehydrogenase (NADP+) activity [GO:0017113]; beta-alanine biosynthetic process [GO:0019483]; cellular response to nitrogen levels [GO:0043562]; uracil catabolic process [GO:0006212] DEVELOPMENTAL STAGE: Up-regulated at days 4 and 5 after germination and during senescence. {ECO:0000269|PubMed:19413687, ECO:0000269|PubMed:21865177}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers. Highly expressed ion dry seeds. {ECO:0000269|PubMed:21865177}. locus:2088570; AT3G17810 Dehydrogenase Dihydropyrimidine dehydrogenase (Os02g0736400 protein) (Putative dihydroorotate dehydrogenase) (Putative dihydropyrimidine dehydrogenase) Q6Z744 Q6Z744_ORYSJ Os02g0736400 OsJ_08303 OSNPB_020736400 P0487D09.22 ENOG411DTWA ABCA10,ABCA12 Q9FLT4,Q9FLT8,A0A1P8BGL8,A0A1P8BFX6 AB10A_ARATH,AB12A_ARATH,A0A1P8BGL8_ARATH,A0A1P8BFX6_ARATH ABC transporter A family member 10 (ABC transporter ABCA.10) (AtABCA10) (ABC2 homolog 14),ABC transporter A family member 12 (ABC transporter ABCA.12) (AtABCA12) (Putative ABC2 homolog 16),ABC2 homolog 16,ABC2 homolog 14 ARA:AT5G61740-MONOMER;,ARA:AT5G61700-MONOMER; R-ATH-1369062;R-ATH-382556; 101045,102235,89237,97068 ABC transporter A family member 10 (ABC transporter ABCA.10) (AtABCA10) (ABC2 homolog 14),ABC transporter A family member 12 (ABC transporter ABCA.12) (AtABCA12) (Putative ABC2 homolog 16),ABC2 homolog 16,ABC2 homolog 14 integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; lipid transport [GO:0006869],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; transporter activity [GO:0005215] AT5G61740,AT5G61700 ABC transporter A family member NA NA NA NA NA NA NA ENOG411DTWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q0D9N5 Q0D9N5_ORYSJ Os06g0707100 Os06g0707100 OsJ_22602 OSNPB_060707100 ENOG411DTWB MWD22.8 Q9LU60,F4KBV6 PUS7_ARATH,F4KBV6_ARATH RNA pseudouridine synthase 7 (EC 5.4.99.-) (RNA pseudouridylate synthase 7) (RNA-uridine isomerase 7),Pseudouridine synthase (EC 5.4.99.-) FUNCTION: Responsible for synthesis of pseudouridine from uracil. {ECO:0000256|RuleBase:RU362028}. ARA:AT5G51140-MONOMER; 5.4.99.- 44625,46543 RNA pseudouridine synthase 7 (EC 5.4.99.-) (RNA pseudouridylate synthase 7) (RNA-uridine isomerase 7),Pseudouridine synthase (EC 5.4.99.-) pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; enzyme-directed rRNA pseudouridine synthesis [GO:0000455],cytosol [GO:0005829]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; pseudouridine synthesis [GO:0001522] locus:2176232; AT5G51140 synthase RNA pseudouridine synthase 7 (EC 5.4.99.-) (RNA pseudouridylate synthase 7) (RNA-uridine isomerase 7),Os02g0512300 protein (Fragment) Q0E0Y3,A0A0P0VJH2 PUS7_ORYSJ,A0A0P0VJH2_ORYSJ Os02g0512300 LOC_Os02g30840,Os02g0512300 OSNPB_020512300 ENOG411DTWE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF573 Os07g0636100 protein (cDNA clone:J013146D06, full insert sequence),Os03g0370250 protein (Fragment) Q0D4B7,C7J0C0 Q0D4B7_ORYSJ,C7J0C0_ORYSJ Os07g0636100 Os07g0636100 OSNPB_070636100,Os03g0370250 OSNPB_030370250 ENOG411DTWD Q6NPN5 FK113_ARATH F-box/kelch-repeat protein At5g26960 45013 F-box/kelch-repeat protein At5g26960 Cul3-RING ubiquitin ligase complex [GO:0031463]; protein ubiquitination [GO:0016567] locus:2148483; AT5G26960 F-box Kelch-repeat protein Os12g0135200 protein,Kelch motif family protein, expressed (Os11g0138700 protein),Os03g0415400 protein C7J9F5,Q2RAT3,A0A0P0VZH9 C7J9F5_ORYSJ,Q2RAT3_ORYSJ,A0A0P0VZH9_ORYSJ Os12g0135200 Os12g0135200 OSNPB_120135200,LOC_Os11g04330 Os11g0138700 OSNPB_110138700,Os03g0415400 OSNPB_030415400 ENOG411DTWG P57741 PFD3_ARATH Probable prefoldin subunit 3 Dwarf; Slow growth; Slightly darker green; Short hypocotyl; Late flowering; Abnormal pavement cell morphology and microtubule development; Sensitive to salt-J. Salinas-2009 FUNCTION: Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). {ECO:0000250}. 21465 Probable prefoldin subunit 3 cytosol [GO:0005829]; polysome [GO:0005844]; prefoldin complex [GO:0016272]; tubulin binding [GO:0015631]; microtubule-based process [GO:0007017]; protein folding [GO:0006457]; tubulin complex assembly [GO:0007021] locus:2157819; AT5G49510 Prefoldin subunit Prefoldin subunit 3,Os12g0562900 protein Q2QNJ8,A0A0P0YBE9 Q2QNJ8_ORYSJ,A0A0P0YBE9_ORYSJ Os12g0562900 LOC_Os12g37590 Os12g0562900 OsJ_36518 OSNPB_120562900,Os12g0562900 OSNPB_120562900 FUNCTION: Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. {ECO:0000256|PIRNR:PIRNR016396}. ENOG411DTWF MFB13.23 Q9FLK9,Q8GYK0,A0A1P8AVV6,F4K217 Q9FLK9_ARATH,Q8GYK0_ARATH,A0A1P8AVV6_ARATH,F4K217_ARATH Cf-5 disease resistance protein-like (Leucine-rich repeat (LRR) family protein) (Leucine-rich repeat disease resistance protein-like),Leucine-rich repeat (LRR) family protein (Putative disease resistance protein),Leucine-rich repeat (LRR) family protein 36796,37023,36303,38313 Cf-5 disease resistance protein-like (Leucine-rich repeat (LRR) family protein) (Leucine-rich repeat disease resistance protein-like),Leucine-rich repeat (LRR) family protein (Putative disease resistance protein),Leucine-rich repeat (LRR) family protein integral component of membrane [GO:0016021],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802] locus:2014854;,locus:2163238; AT5G61240,AT1G13910 Leucine-rich repeat receptor-like protein kinase Leucine-rich repeat resistance protein, putative, expressed (Os03g0211900 protein) (cDNA clone:001-025-C11, full insert sequence),Os03g0211900 protein Q10Q29,A0A0P0VUV8 Q10Q29_ORYSJ,A0A0P0VUV8_ORYSJ Os03g0211900 LOC_Os03g11340 Os03g0211900 OsJ_09888 OSNPB_030211900,Os03g0211900 OSNPB_030211900 ENOG411DTWY VHA-A O23654,F4I601 VATA_ARATH,F4I601_ARATH V-type proton ATPase catalytic subunit A (V-ATPase subunit A) (EC 3.6.3.14) (V-ATPase 69 kDa subunit) (Vacuolar H(+)-ATPase subunit A) (Vacuolar proton pump subunit alpha),Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein Complete male gametophyte defective; Female gametophyte defective-K. Schumacher-2005 FUNCTION: Catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. ARA:AT1G78900-MONOMER; R-ATH-1222556;R-ATH-77387;R-ATH-917977; 3.6.3.14 68812,7387 V-type proton ATPase catalytic subunit A (V-ATPase subunit A) (EC 3.6.3.14) (V-ATPase 69 kDa subunit) (Vacuolar H(+)-ATPase subunit A) (Vacuolar proton pump subunit alpha),Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; proton-transporting V-type ATPase, V1 domain [GO:0033180]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; protease binding [GO:0002020]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP metabolic process [GO:0046034]; Golgi organization [GO:0007030]; pollen development [GO:0009555]; response to salt stress [GO:0009651] locus:2037493; AT1G78900,AT1G16820 V-type proton ATPase catalytic subunit Os06g0662000 protein (Putative vacuolar proton-ATPase),Os02g0175400 protein (Putative vacuolar proton-ATPase),Os06g0662000 protein (Fragment) Q651T8,Q6EUQ9,A0A0N7KMJ5,A0A0P0WZY9 Q651T8_ORYSJ,Q6EUQ9_ORYSJ,A0A0N7KMJ5_ORYSJ,A0A0P0WZY9_ORYSJ Os06g0662000 OsJ_22250 OSJNBa0051O02.43 OSJNBb0065C04.10 OSNPB_060662000,Os02g0175400 Os02g0175400 OJ1077_E05.10 OsJ_05583 OSNPB_020175400,Os06g0662000 OSNPB_060662000 ENOG411DTWX AUG6 Q94BP7 AUG6_ARATH AUGMIN subunit 6 FUNCTION: Contributes to the assembly of the acentrosomal spindle and phragmoplast microtubule arrays as part of the augmin complex. {ECO:0000305|PubMed:22505726}. 80935 AUGMIN subunit 6 HAUS complex [GO:0070652]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; spindle [GO:0005819]; microtubule minus-end binding [GO:0051011]; cell division [GO:0051301]; megagametogenesis [GO:0009561]; microgametogenesis [GO:0055046]; microtubule cytoskeleton organization [GO:0000226]; spindle assembly [GO:0051225] locus:2168828; AT5G40740 NA Os02g0329300 protein Q6Z7I5 Q6Z7I5_ORYSJ Os02g0329300 OJ1521_G01.18 OsJ_06518 OSNPB_020329300 ENOG411DTWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 Os01g0947000 protein (Putative endo-1,3-beta-glucanase) (cDNA clone:001-123-F10, full insert sequence),Endo-1,3-beta-glucanase (Os01g0946700 protein) (cDNA clone:J023004E16, full insert sequence),Os01g0945733 protein,Beta 1,3-glucanase (Os01g0944700 protein) (Putative beta 1,3-glucanase) (Putative endo-1,3-beta-glucanase) (cDNA clone:J023041A20, full insert sequence),Os01g0946500 protein,Os01g0941200 protein (Putative endo-1,3-beta-glucanase) (cDNA, clone: J100080E04, full insert sequence) Q8GT15,Q5JMU8,Q5JKI6,Q94CR1,Q0JG30,Q8S9Q6 Q8GT15_ORYSJ,Q5JMU8_ORYSJ,Q5JKI6_ORYSJ,Q94CR1_ORYSJ,Q0JG30_ORYSJ,Q8S9Q6_ORYSJ Os01g0947000 OsJ_04738 OSNPB_010947000 P0466H10.10,Os01g0946700 OSNPB_010946700 P0466H10.5,P0614D08.32 Os01g0945733 OSNPB_010945733,P0660F12.19 Os01g0944700 OSNPB_010944700 P0614D08.21,Os01g0946500 Os01g0946500 OsJ_04744 OSNPB_010946500,Os01g0941200 OsJ_04739 OSNPB_010941200 P0432C03.18 ENOG411DTWQ Q9C803,Q9SN29,A0A1P8AW92,A0A1P8AW94 Q9C803_ARATH,Q9SN29_ARATH,A0A1P8AW92_ARATH,A0A1P8AW94_ARATH E3 ubiquitin-protein ligase (Uncharacterized protein At1g33490/F10C21_22) (Uncharacterized protein F10C21.22),Transmembrane protein (Uncharacterized protein AT4g10140) (Uncharacterized protein F28M11.60),E3 ubiquitin-protein ligase 18828,19621,14841,14163 E3 ubiquitin-protein ligase (Uncharacterized protein At1g33490/F10C21_22) (Uncharacterized protein F10C21.22),Transmembrane protein (Uncharacterized protein AT4g10140) (Uncharacterized protein F28M11.60),E3 ubiquitin-protein ligase endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ligase activity [GO:0016874],Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021]; ligase activity [GO:0016874] locus:2007018;,locus:2124690; AT1G33490,AT4G10140 Inherit from NOG: cytoplasmic membrane protein Os05g0105500 protein (cDNA, clone: J075115L08, full insert sequence) B7F978 B7F978_ORYSJ Os05g0105500 OsJ_16813 OSNPB_050105500 ENOG411DTWP PUX10 Q9M0N1 PUX10_ARATH Plant UBX domain-containing protein 10 (PUX10) R-ATH-6798695; 52803 Plant UBX domain-containing protein 10 (PUX10) plasma membrane [GO:0005886] locus:2132751; AT4G10790 fas-associated factor Os10g0520600 protein (UBX domain containing protein, expressed) (cDNA clone:J023077I21, full insert sequence),Os10g0520600 protein (Fragment) Q9FWC4,Q0IWB6 Q9FWC4_ORYSJ,Q0IWB6_ORYSJ Os10g0520600 LOC_Os10g37630 OSJNBb0018B10.16 OSNPB_100520600,Os10g0520600 OSNPB_100520600 ENOG411DTWS A0A1P8B7Z7,F4JKA2,A0A1P8B7Z9 A0A1P8B7Z7_ARATH,F4JKA2_ARATH,A0A1P8B7Z9_ARATH Binding / calmodulin binding protein 145820,142812,146465 Binding / calmodulin binding protein spindle organization [GO:0007051] locus:2141657; AT4G21820 IQ calmodulin-binding motif Os07g0517400 protein A0A0P0X6R1 A0A0P0X6R1_ORYSJ Os07g0517400 OSNPB_070517400 ENOG411DTWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DTWU RanBPM Q9SMS3,Q8VYQ8,Q8RX25,F4HYD7 Q9SMS3_ARATH,Q8VYQ8_ARATH,Q8RX25_ARATH,F4HYD7_ARATH SPla/RYanodine receptor (SPRY) domain-containing protein (Uncharacterized protein AT4g09310),SPla/RYanodine receptor (SPRY) domain-containing protein (Uncharacterized protein At1g35470),At4g09200 (SPla/RYanodine receptor (SPRY) domain-containing protein) (Uncharacterized protein At4g09200) (Uncharacterized protein At4g09310),SPla/RYanodine receptor (SPRY) domain-containing protein 38892,52094,44257,52349 SPla/RYanodine receptor (SPRY) domain-containing protein (Uncharacterized protein AT4g09310),SPla/RYanodine receptor (SPRY) domain-containing protein (Uncharacterized protein At1g35470),At4g09200 (SPla/RYanodine receptor (SPRY) domain-containing protein) (Uncharacterized protein At4g09200) (Uncharacterized protein At4g09310),SPla/RYanodine receptor (SPRY) domain-containing protein cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2137941;,locus:2137931;locus:2831730;,locus:2008683; AT4G09250,AT1G35470,AT4G09200AT4G09310; Ran-binding protein Os02g0556600 protein (RanBPM-like) Q6ZI83 Q6ZI83_ORYSJ OJ1008_F08.16 Os02g0556600 OSNPB_020556600 ENOG411DTWT MPK16,MPK9,MPK20 Q8W4J2,Q9LV37,A0A1P8B0K7,F4J7I7,A0A1I9LRW1 MPK16_ARATH,MPK9_ARATH,A0A1P8B0K7_ARATH,F4J7I7_ARATH,A0A1I9LRW1_ARATH Mitogen-activated protein kinase 16 (AtMPK16) (MAP kinase 16) (EC 2.7.11.24),Mitogen-activated protein kinase 9 (AtMPK9) (MAP kinase 9) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24),MAP kinase 9 Enhanced transpirational water loss.Impaired stomatal response to ABA and reactive oxygen. 2.7.11.24 64912,58395,53872,48397,57789 Mitogen-activated protein kinase 16 (AtMPK16) (MAP kinase 16) (EC 2.7.11.24),Mitogen-activated protein kinase 9 (AtMPK9) (MAP kinase 9) (EC 2.7.11.24),Mitogen-activated protein kinase (EC 2.7.11.24),MAP kinase 9 nucleus [GO:0005634]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; regulation of gene expression [GO:0010468],cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; abscisic acid-activated signaling pathway [GO:0009738]; regulation of gene expression [GO:0010468],intracellular [GO:0005622]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2179609;,locus:2092717; AT5G19010,AT3G18040 Mitogen-activated protein kinase Mitogen-activated protein kinase 14 (MAP kinase 14) (EC 2.7.11.24),Mitogen-activated protein kinase 15 (MAP kinase 15) (EC 2.7.11.24),Os05g0143500 protein,Os06g0509100 protein (cDNA clone:J013129F03, full insert sequence),Os06g0509100 protein (Fragment),Os05g0143500 protein (Fragment) Q75KK8,Q53N72,C7J251,Q0DBX9,A0A0P0WX16,A0A0P0WHU8 MPK14_ORYSJ,MPK15_ORYSJ,C7J251_ORYSJ,Q0DBX9_ORYSJ,A0A0P0WX16_ORYSJ,A0A0P0WHU8_ORYSJ MPK14 Os05g0143500 LOC_Os05g05160 OJ1264_A04.20 OJ1607_F09.3,MPK15 Os11g0271100 LOC_Os11g17080,Os05g0143500 Os05g0143500 OSNPB_050143500,Os06g0509100 Os06g0509100 OSNPB_060509100,Os06g0509100 OSNPB_060509100,Os05g0143500 OSNPB_050143500 ENOG411DTWW Q8VZW6 Q8VZW6_ARATH Elongation factor P (EF-P) family protein (Putative elongation factor P (EF-P)) 26228 Elongation factor P (EF-P) family protein (Putative elongation factor P (EF-P)) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; translation elongation factor activity [GO:0003746] locus:2077888; AT3G08740 elongation factor P Elongation factor P, putative, expressed (Os12g0115900 protein) (cDNA clone:001-014-A09, full insert sequence),Elongation factor P, putative, expressed (Os11g0116400 protein) (cDNA clone:006-206-B05, full insert sequence) Q2QYK4,Q2RBC6 Q2QYK4_ORYSJ,Q2RBC6_ORYSJ LOC_Os12g02380 Os12g0115900 OSNPB_120115900,LOC_Os11g02450 Os11g0116400 OsJ_32726 OSNPB_110116400 ENOG411DTWV petC Q9ZR03 UCRIA_ARATH Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (EC 1.10.9.1) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (Proton gradient regulation protein 1) (Rieske iron-sulfur protein) (ISP) (RISP) Knockdown: Reduced electron transport at saturating light intensities; No other phenotypes detected-T. Shikanai-2001 FUNCTION: Essential protein for photoautotrophism. Confers resistance to photo-oxidative damages by contributing to the thermal dissipation of light energy and to lumenal acidification (increase of pH gradient). Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (By similarity). {ECO:0000250, ECO:0000269|PubMed:11722777, ECO:0000269|PubMed:12023025, ECO:0000269|PubMed:12970486}. MISCELLANEOUS: This protein is 1 of 2 subunits of the cytochrome b6-f complex that are encoded in the nucleus.; MISCELLANEOUS: The Rieske iron-sulfur protein is a high potential 2Fe-2S protein. ARA:AT4G03280-MONOMER; 1.10.9.1 24366 Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (EC 1.10.9.1) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (Proton gradient regulation protein 1) (Rieske iron-sulfur protein) (ISP) (RISP) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; cytochrome b6f complex [GO:0009512]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; thylakoid [GO:0009579]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity [GO:0046028]; electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity [GO:0045158]; metal ion binding [GO:0046872]; plastoquinol--plastocyanin reductase activity [GO:0009496]; defense response to bacterium [GO:0042742]; nonphotochemical quenching [GO:0010196]; photosynthetic electron transport chain [GO:0009767]; response to karrikin [GO:0080167] TISSUE SPECIFICITY: Confined to photosynthetic tissues, with highest levels in flowers. In leaves, mostly localized in mesophyll cells. In stems, confined to the peripheral ring of chlorenchyma and adjoining groups of cells associated with the vascular bundles. In siliques, present in green wall of the fruit and in peduncle but not in the translucide white septum of the seeds. {ECO:0000269|PubMed:12040099}. locus:2005534; AT4G03280 Cytochrome b6-f complex iron-sulfur subunit Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (EC 1.10.9.1) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (Rieske iron-sulfur protein) (ISP) (RISP) Q69S39 UCRIA_ORYSJ petC Os07g0556200 LOC_Os07g37030 OsJ_06631 OSJNBa0058I18.25 FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. {ECO:0000250}. MISCELLANEOUS: This protein is 1 of 2 subunits of the cytochrome b6-f complex that are encoded in the nucleus.; MISCELLANEOUS: The Rieske iron-sulfur protein is a high potential 2Fe-2S protein. ENOG411E4N1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0332600 protein (cDNA clone:J033044B19, full insert sequence),Os02g0274000 protein (Fragment) Q69WH5,Q0E239 Q69WH5_ORYSJ,Q0E239_ORYSJ Os06g0332600 Os06g0332600 OSNPB_060332600 P0531C01.20 P0577H07.28,Os02g0274000 Os02g0274000 OSNPB_020274000 ENOG411E4N0 TSPO O82245 TSPO_ARATH Translocator protein homolog (AtTSPO) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19548979}. FUNCTION: Stress-induced membrane protein that can bind heme and may play a role in the transport of tetrapyrrole intermediates during salt stress and contribute to the detoxification of highly reactive porphyrins in the cytoplasm. {ECO:0000269|PubMed:15215507, ECO:0000269|PubMed:19548979, ECO:0000269|PubMed:19838071, ECO:0000269|PubMed:21317376, ECO:0000269|PubMed:21689410}. MISCELLANEOUS: Plants overexpressing TSPO show increased sensitivity to ABA and salt stress. Cultured cells overexpressing TSPO have reduced greening and chlorophyll a content under light-growing conditions. 21062 Translocator protein homolog (AtTSPO) chloroplast membrane [GO:0031969]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; Golgi stack [GO:0005795]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; porphyrin-containing compound metabolic process [GO:0006778]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; transport [GO:0006810] TISSUE SPECIFICITY: Specifically expressed in seeds (at protein level). {ECO:0000269|PubMed:19548979}. locus:2043358; AT2G47770 TspO/MBR family Os05g0151200 protein (cDNA, clone: J065041L18, full insert sequence) B7F8G3 B7F8G3_ORYSJ Os05g0151200 Os05g0151200 OSNPB_050151200 ENOG411E4N3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ribosomal protein Ribosomal protein S1 Q8HCN1 Q8HCN1_ORYSJ rps1 ENOG411E4N2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0213700 protein) (cDNA clone:001-122-E10, full insert sequence) Q7XG51 Q7XG51_ORYSJ LOC_Os10g15300 Os10g0213700 OSJNBb0047B19.16 OSNPB_100213700 ENOG411E4N5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 Os09g0421700 protein (cDNA clone:002-144-D12, full insert sequence) Q69P58 Q69P58_ORYSJ Os09g0421700 OJ1740_D06.21 OSNPB_090421700 ENOG411E4N4 BHLH104 Q8L467 BH104_ARATH Transcription factor bHLH104 (Basic helix-loop-helix protein 104) (AtbHLH104) (bHLH 104) (Transcription factor EN 136) (bHLH transcription factor bHLH104) 31995 Transcription factor bHLH104 (Basic helix-loop-helix protein 104) (AtbHLH104) (bHLH 104) (Transcription factor EN 136) (bHLH transcription factor bHLH104) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2129710; AT4G14410 Transcription factor NA NA NA NA NA NA NA ENOG411E4N6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0476000 protein (cDNA clone:J033044C05, full insert sequence),Os01g0567700 protein Q0DHC6,A0A0P0V478 Q0DHC6_ORYSJ,A0A0P0V478_ORYSJ Os05g0476000 Os05g0476000 OSNPB_050476000,Os01g0567700 OSNPB_010567700 ENOG411E4N9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 OSJNBb0034G17.3 protein (Os04g0549800 protein) Q7XU23 Q7XU23_ORYSJ Os04g0549800 OsJ_15690 OSJNBb0034G17.3 OSNPB_040549800 ENOG411E4N8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0502900 protein A0A0P0XHX4 A0A0P0XHX4_ORYSJ Os08g0502900 OSNPB_080502900 ENOG411E4NA TFIIA-S Q39236 T2AG_ARATH Transcription initiation factor IIA subunit 2 (General transcription factor IIA subunit 2) (Transcription initiation factor IIA gamma chain) (TFIIA-gamma) FUNCTION: TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity (By similarity). {ECO:0000250}. R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 12140 Transcription initiation factor IIA subunit 2 (General transcription factor IIA subunit 2) (Transcription initiation factor IIA gamma chain) (TFIIA-gamma) transcription factor TFIIA complex [GO:0005672]; TBP-class protein binding [GO:0017025]; transcription coactivator activity [GO:0003713]; positive regulation of sequence-specific DNA binding transcription factor activity [GO:0051091]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; RNA polymerase II transcriptional preinitiation complex assembly [GO:0051123] locus:2136017; AT4G24440 TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation (By similarity) Transcription initiation factor IIA subunit 2 (General transcription factor IIA subunit 2) (Transcription initiation factor IIA gamma chain) (TFIIA-gamma) Q0DLD3 T2AG_ORYSJ TFIIAy XA5 Os05g0107700 LOC_Os05g01710 OSJNBa0068N01.8 FUNCTION: TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity (By similarity). Protein involved in the resistance to X.oryzae. {ECO:0000250}. MISCELLANEOUS: The displayed sequence corresponds to the form of the protein present in strains susceptible to X.oryzae. Substitution of Val-39 to Glu-39 in cultivar indica IRBB5 confers resistance to X.oryzae. ENOG411E4NC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os01g0946200 protein (cDNA clone:J023080K20, full insert sequence) (p0660F12.31 protein),Os01g0378400 protein Q94CP9,Q5ZDF4 Q94CP9_ORYSJ,Q5ZDF4_ORYSJ P0660F12.31 Os01g0946200 OSNPB_010946200 P0614D08.37,P0416G11.36 Os01g0378400 OSNPB_010378400 ENOG411E4NE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0521500 protein,Os12g0527400 protein,Os12g0517700 protein A0A0P0YAQ6,A0A0P0YAT9,A0A0P0YAR6 A0A0P0YAQ6_ORYSJ,A0A0P0YAT9_ORYSJ,A0A0P0YAR6_ORYSJ Os12g0521500 OSNPB_120521500,Os12g0527400 OSNPB_120527400,Os12g0517700 OSNPB_120517700 ENOG411E4ND MYB86 Q8LPH6,A0A1P8BGT1 MYB86_ARATH,A0A1P8BGT1_ARATH Transcription factor MYB86 (Myb homolog 4) (AtMyb4) (Myb-related protein 86) (AtMYB86),Myb domain protein 86 FUNCTION: Probable transcription factor. {ECO:0000250}. 39790,36266 Transcription factor MYB86 (Myb homolog 4) (AtMyb4) (Myb-related protein 86) (AtMYB86),Myb domain protein 86 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}. locus:2146804; AT5G26660 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E4NG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4NF UGT71B6,UGT71B7,UGT71B8 Q9LSY6,Q9LSY5,Q9LSY4,Q8GYB0 U71B6_ARATH,U71B7_ARATH,U71B8_ARATH,Q8GYB0_ARATH UDP-glycosyltransferase 71B6 (EC 2.4.1.-) (Abscisic acid glycosyltransferase),UDP-glycosyltransferase 71B7 (EC 2.4.1.-),UDP-glycosyltransferase 71B8 (EC 2.4.1.-),At4g15260 (Glycosyltransferase) (Putative glucosyltransferase) (UDP-Glycosyltransferase superfamily protein) No visible phenotype. FUNCTION: Glucosyltransferase that glucosylates the (+) enantiomer of abscisic acid ((+)-ABA). Is not active on structural analogs with alterations to the 8'- and 9'- methyl groups. {ECO:0000269|PubMed:16083885}.,FUNCTION: Possesses low quercetin 3-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro. {ECO:0000269|PubMed:15352060}. MetaCyc:AT3G21780-MONOMER;,ARA:AT3G21790-MONOMER;,ARA:AT4G15260-MONOMER; 2.4.1.- 53844,55628,53685,40624 UDP-glycosyltransferase 71B6 (EC 2.4.1.-) (Abscisic acid glycosyltransferase),UDP-glycosyltransferase 71B7 (EC 2.4.1.-),UDP-glycosyltransferase 71B8 (EC 2.4.1.-),At4g15260 (Glycosyltransferase) (Putative glucosyltransferase) (UDP-Glycosyltransferase superfamily protein) intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glycosyltransferase activity [GO:0008194]; abscisic acid catabolic process [GO:0046345]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 4'-O-glucosyltransferase activity [GO:0080046]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2093104;,locus:2093024;,locus:2093034;,locus:2129875; AT3G21780,AT3G21790,AT3G21800,AT4G15260 UDP-glucoronosyl UDP-glucosyl transferase family protein NA NA NA NA NA NA NA ENOG411E4NI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper Os08g0487100 protein Q6ZCW4 Q6ZCW4_ORYSJ Os08g0487100 Os08g0487100 OSNPB_080487100 P0028A08.8 P0481F05.29 ENOG411E4NH Q0WQ99 Q0WQ99_ARATH Transmembrane protein (Uncharacterized protein At4g16850) 34971 Transmembrane protein (Uncharacterized protein At4g16850) integral component of membrane [GO:0016021] locus:2129211; AT4G16850 NA NA NA NA NA NA NA NA ENOG411E4NK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 NA NA NA NA NA NA NA ENOG411E4NJ O48822 Y2794_ARATH WEB family protein At2g17940 23909 WEB family protein At2g17940 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2060912; AT2G17940 NA NA NA NA NA NA NA NA ENOG411E4NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor domain containing protein Os06g0720900 protein (Os06g0724000 protein) (cDNA, clone: J100032B03, full insert sequence),Os06g0719500 protein (Fragment),Os06g0724000 protein Q5Z4G3,A0A0P0X1A0,A0A0P0X170 Q5Z4G3_ORYSJ,A0A0P0X1A0_ORYSJ,A0A0P0X170_ORYSJ Os06g0720900 Os06g0724000 OSJNBa0076I16.27 OSNPB_060720900 OSNPB_060724000 P0535F09.31,Os06g0719500 OSNPB_060719500,Os06g0724000 OSNPB_060724000 ENOG411E4NN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) MADS-box transcription factor 51 (OsMADS51) (OsMADS65) Q9XJ61 MAD51_ORYSJ MADS51 Os01g0922800 LOC_Os01g69850 B1455F06.16 DISRUPTION PHENOTYPE: Late flowering under short day (SD) conditions. {ECO:0000269|PubMed:17951465}. FUNCTION: Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. MISCELLANEOUS: Plant over-expressing MADS50 have an early flowering phenotype under short day (SD) conditions. {ECO:0000269|PubMed:17951465}. ENOG411E4NQ DOF3.4 Q39088 DOF34_ARATH Dof zinc finger protein DOF3.4 (AtDOF3.4) (OBF-binding protein 1) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. 26382 Dof zinc finger protein DOF3.4 (AtDOF3.4) (OBF-binding protein 1) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell wall modification [GO:0042545]; positive regulation of cell cycle [GO:0045787]; positive regulation of transcription, DNA-templated [GO:0045893]; response to auxin [GO:0009733]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:8718629}. locus:2074850; AT3G50410 Zinc finger protein NA NA NA NA NA NA NA ENOG411E4NP DOF5.4 Q8LDR0 DOF54_ARATH Dof zinc finger protein DOF5.4 (AtDOF5.4) (OBF-binding protein 4) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. 32741 Dof zinc finger protein DOF5.4 (AtDOF5.4) (OBF-binding protein 4) nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2159275; AT5G60850 zinc finger protein Dof zinc finger protein 4 (OsDof4) Q6Z345 DOF4_ORYSJ DOF4 Os02g0726300 LOC_Os02g49440 B1121A12.10 FUNCTION: Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. ENOG411E4NS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os08g0403300 protein (Putative farnesylated protein) Q6Z273 Q6Z273_ORYSJ Os08g0403300 OJ1118_A03.3 OsJ_27234 OSJNBa0086F04.42 OSNPB_080403300 ENOG411E4NR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex the final protein carrier in the mitochondrial electron-transport chain (By similarity) Os04g0693050 protein A0A0P0WGT0 A0A0P0WGT0_ORYSJ Os04g0693050 OSNPB_040693050 FUNCTION: Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. {ECO:0000256|RuleBase:RU004427}. ENOG411E4NU F17I14_290,F17I14_280 Q9LXB7,Q9LXB8 Q9LXB7_ARATH,Q9LXB8_ARATH Hydroxyproline-rich glycoprotein family protein (Putative proline-rich protein),Hydroxyproline-rich glycoprotein family protein (Periaxin-like protein) FUNCTION: Positive regulator of germination and plant growth. {ECO:0000269|PubMed:21559969}. 14671,41609 Hydroxyproline-rich glycoprotein family protein (Putative proline-rich protein),Hydroxyproline-rich glycoprotein family protein (Periaxin-like protein) multicellular organism development [GO:0007275],post-embryonic development [GO:0009791] locus:2144706;,locus:2144716; AT5G09520,AT5G09530 NA NA NA NA NA NA NA NA ENOG411E4NT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0538400 protein (cDNA clone:002-142-F04, full insert sequence) Q5Z6U2 Q5Z6U2_ORYSJ P0551A03.34-1 Os06g0538400 OSNPB_060538400 ENOG411E4NW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mitochondrial import inner membrane translocase subunit tim23-like NA NA NA NA NA NA NA ENOG411E4NY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os04g0545600 protein (cDNA clone:001-125-H05, full insert sequence) Q0JBA5 Q0JBA5_ORYSJ Os04g0545600 Os04g0545600 OSNPB_040545600 ENOG411E4NX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Pectinesterase inhibitor 28 (Pectin methylesterase inhibitor 28) (OsPMEI28),Os12g0283400 protein (Pectinesterase inhibitor domain containing protein, expressed) Q0J8J8,Q2QTT7 PMI28_ORYSJ,Q2QTT7_ORYSJ PMEI28 Os08g0108100 LOC_Os08g01670 P0450B04.30,Os12g0283400 LOC_Os12g18560 Os12g0283400 OSNPB_120283400 FUNCTION: Pectin methylesterase (PME) inhibitor that inhibits PME in vitro. Functions as a critical structural modulator by regulating the degree of pectin methylesterification and the physiochemical properties of the cell wall components. {ECO:0000269|PubMed:27889517}. MISCELLANEOUS: Plants over-expressing PMEI28 are dwarf and have shortenend culm length, due to increased level of pectin methylesterification. {ECO:0000269|PubMed:27889517}. ENOG411E4NZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ribosome biogenesis regulatory protein Os06g0142000 protein (Trypsin-like peptidase 1) A0A0P0WSS2 A0A0P0WSS2_ORYSJ Os06g0142000 TP1 OSNPB_060142000 ENOG411DZEM MUR1,GMD1 P93031,Q9SNY3 GMD2_ARATH,GMD1_ARATH GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose dehydratase 2) (GMD 2),GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose dehydratase 1) (GMD 1) Contains less than 2% of wild-type amount of fucose in aerial parts of the plant body. Fucose content in total root polysaccharides is only reduced by about 40%.,Elongating parts of inflorescences are fragile.,Mutant grown axenically in the presence of 10 mM L-fucose contain WT amounts of fucose in both root- and leaf-derived cell wall material. Dwarf; Low L-fucose levels in cell wall-W. Reiter-1997 FUNCTION: Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose. {ECO:0000269|PubMed:12805618, ECO:0000269|PubMed:9050909}.,FUNCTION: Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose. {ECO:0000269|PubMed:12805618}. PATHWAY: Nucleotide-sugar biosynthesis; GDP-L-fucose biosynthesis via de novo pathway; GDP-L-fucose from GDP-alpha-D-mannose: step 1/2. ARA:AT3G51160-MONOMER;MetaCyc:AT3G51160-MONOMER;,ARA:AT5G66280-MONOMER; R-ATH-6787639; 4.2.1.47; 4.2.1.47 41961,40850 GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose dehydratase 2) (GMD 2),GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose dehydratase 1) (GMD 1) cytosol [GO:0005829]; GDP-mannose 4,6-dehydratase activity [GO:0008446]; GTP binding [GO:0005525]; 'de novo' GDP-L-fucose biosynthetic process [GO:0042351]; GDP-mannose metabolic process [GO:0019673]; unidimensional cell growth [GO:0009826],GDP-mannose 4,6-dehydratase activity [GO:0008446]; 'de novo' GDP-L-fucose biosynthetic process [GO:0042351]; GDP-mannose metabolic process [GO:0019673] TISSUE SPECIFICITY: Expressed in roots, flowers, siliques, leaves and stems. Not expressed in the root meristem and the proximal part of the elongation zone, or in emerging lateral roots. Expressed in trichomes and guard cells, and in pollen just before anthesis. {ECO:0000269|PubMed:12805618}.,TISSUE SPECIFICITY: Expressed in roots,stipules and pollen just before anthesis. Primarily localized to the root meristem and columella root cap. Not expressed in emerging lateral roots. {ECO:0000269|PubMed:12805618}. locus:2080933;,locus:2155036; AT3G51160,AT5G66280 GDP-Mannose Os06g0137700 protein (Putative root cap-specific protein) (cDNA clone:006-207-A06, full insert sequence) (cDNA clone:J033043A08, full insert sequence),Os06g0137700 protein (Fragment),Os04g0374200 protein Q5VPH2,Q0DES4,A0A0P0W9S9 Q5VPH2_ORYSJ,Q0DES4_ORYSJ,A0A0P0W9S9_ORYSJ Os06g0137700 P0548D03.38-1 OSJNBa0041F13.8-1 OSNPB_060137700,Os06g0137700 Os06g0137700 OSNPB_060137700,Os04g0374200 OSNPB_040374200 ENOG411DZEN ccsA P56770 CCSA_ARATH Cytochrome c biogenesis protein CcsA FUNCTION: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. {ECO:0000255|HAMAP-Rule:MF_01391}. 37732 Cytochrome c biogenesis protein CcsA chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; heme binding [GO:0020037]; cytochrome complex assembly [GO:0017004]; heme transport [GO:0015886]; oxidation-reduction process [GO:0055114] locus:504954727; ATCG01040 Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment Cytochrome c biogenesis protein CcsA P0C377 CCSA_ORYSJ ccsA LOC_Osp1g00900 Nip168 FUNCTION: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. {ECO:0000255|HAMAP-Rule:MF_01391}. ENOG411DZEI CYCU4-1 O80513 CCU41_ARATH Cyclin-U4-1 (CycU4;1) (Cyclin-P4.1) (CycP4;1) 23043 Cyclin-U4-1 (CycU4;1) (Cyclin-P4.1) (CycP4;1) protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in the shoot apex, leaf primordia and young leaves. {ECO:0000269|PubMed:15197472}. locus:2042421; AT2G44740 cell division Cyclin-P4-1 (CycP4;1) Q7XC35 CCP41_ORYSJ CYCP4-1 Os10g0563900 LOC_Os10g41430 OsJ_031206 OSJNBa0027P10.16 ENOG411DZEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcription factor BHLH protein family-like (BHLH transcription factor) (Os08g0490000 protein) (cDNA clone:J023030J22, full insert sequence),BHLH protein family-like (BHLH transcription factor) (Os09g0475400 protein),Os08g0490000 protein (Fragment),Os09g0475400 protein (Fragment) Q6ZBQ2,Q69JI7,A0A0P0XHD5,A0A0P0XP00 Q6ZBQ2_ORYSJ,Q69JI7_ORYSJ,A0A0P0XHD5_ORYSJ,A0A0P0XP00_ORYSJ Os08g0490000 Os08g0490000 OSNPB_080490000 P0605H02.26,P0556A05.2-1 Os09g0475400 OsJ_29738 OSJNBa0026C08.39-1 OSNPB_090475400,Os08g0490000 OSNPB_080490000,Os09g0475400 OSNPB_090475400 ENOG411DZEK MYB24 Q9SPG9,A0A1P8BB28 MYB24_ARATH,A0A1P8BB28_ARATH Transcription factor MYB24 (Myb-related protein 24) (AtMYB24),Myb domain protein 24 DISRUPTION PHENOTYPE: No visible phenotype. Myb24 and myb57 double mutant has petals that grew to a final height parallel to the pistil. Myb21 and myb24 double mutant is partially sterile and has petals that just grew out of the sepals but ended at a lower level than the stigma. Myb21, myb24 and myb57 triple mutant has a strongly reduced fertility and an arrested growth of the petals that never grew out of the sepals. Myb24 and myb108 double mutant has a reduced fertility and a greatly reduced seed set. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888}. FUNCTION: Transcription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. 24459,19660 Transcription factor MYB24 (Myb-related protein 24) (AtMYB24),Myb domain protein 24 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; gibberellic acid mediated signaling pathway [GO:0009740]; jasmonic acid mediated signaling pathway [GO:0009867]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; stamen development [GO:0048443]; stamen filament development [GO:0080086]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: Tightly regulated during anther development. {ECO:0000269|PubMed:16972096}. TISSUE SPECIFICITY: Expressed specifically in flowers. Expressed in all four whorls of the flower and in the vascular tissue of stamen filament and sepals. Detected in male and female gametophytes, especially in microspores and ovules. Weakly expressed in petals and the upper part of pistils. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19325888}. locus:2170573; AT5G40350 Transcription factor NA NA NA NA NA NA NA ENOG411DZEJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Os10g0459300 protein,Os01g0723050 protein C7J7K4,A0A0P0V7M9 C7J7K4_ORYSJ,A0A0P0V7M9_ORYSJ Os10g0459300 OSNPB_100459300,Os01g0723050 OSNPB_010723050 ENOG411DZEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os05g0131000 protein (cDNA clone:002-145-D01, full insert sequence) Q65XT8 Q65XT8_ORYSJ Os05g0131000 Os05g0131000 OSNPB_050131000 P0033D06.10 ENOG411DZED T6D9_70 Q9M169,A0A1I9LLU8 Q9M169_ARATH,A0A1I9LLU8_ARATH Hydrolase family protein / HAD-superfamily protein (Uncharacterized protein At3g45740) (Uncharacterized protein T6D9_70),Hydrolase family protein / HAD-superfamily protein 41909,31751 Hydrolase family protein / HAD-superfamily protein (Uncharacterized protein At3g45740) (Uncharacterized protein T6D9_70),Hydrolase family protein / HAD-superfamily protein mitochondrion [GO:0005739]; copper ion binding [GO:0005507]; hydrolase activity [GO:0016787]; zinc ion binding [GO:0008270]; glycerophospholipid biosynthetic process [GO:0046474],hydrolase activity [GO:0016787] locus:2102704; AT3G45740 Inherit from KOG: Cat eye syndrome chromosome region candidate 5 HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed (Os03g0284500 protein),Os03g0284500 protein Q8GZY3,A0A0P0VWU3 Q8GZY3_ORYSJ,A0A0P0VWU3_ORYSJ LOC_Os03g17590 Os03g0284500 OsJ_10399 OSJNBa0013D02.19 OSNPB_030284500,Os03g0284500 OSNPB_030284500 ENOG411DZEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain Os04g0401300 protein A0A0P0WA33 A0A0P0WA33_ORYSJ Os04g0401300 OSNPB_040401300 ENOG411DZEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os05g0474800 protein (WRKY transcription factor 70) Q65WW1 Q65WW1_ORYSJ Os05g0474800 Os05g0474800 OSNPB_050474800 P0486C01.14 ENOG411DZEA UGT91A1,UGT91C1 Q940V3,Q9LTA3 U91A1_ARATH,U91C1_ARATH UDP-glycosyltransferase 91A1 (EC 2.4.1.-),UDP-glycosyltransferase 91C1 (EC 2.4.1.-) ARA:AT2G22590-MONOMER;,ARA:AT5G49690-MONOMER; 2.4.1.- 53597,51957 UDP-glycosyltransferase 91A1 (EC 2.4.1.-),UDP-glycosyltransferase 91C1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2066010;,locus:2156997; AT2G22590,AT5G49690 UDP-Glycosyltransferase Os01g0865400 protein (Putative UDP-glucosyltransferase) Q8LJC6 Q8LJC6_ORYSJ Os01g0865400 OSNPB_010865400 P0505D12.11 ENOG411DZEC EDE1,QWRF6 O80588,Q5BPM6 EDE1_ARATH,QWRF6_ARATH Protein ENDOSPERM DEFECTIVE 1 (Protein EMBRYO DEFECTIVE 3116) (QWRF motif-containing protein 5),QWRF motif-containing protein 6 DISRUPTION PHENOTYPE: Aborted seed development. {ECO:0000269|PubMed:19151224}. Embryonic lethal in homozygotes.,Mutants display 66% seed abortion with both brown shrunken seeds (late abortion) and small white desiccated seeds (early abortion). Cellularization of endosperm is not observed. Microtubule organization in endosperm in defective. Embryo defective; Preglobular / Globular-D. Meinke-2011 FUNCTION: Microtubule-associated protein required for seed development and for microtubule function in the endosperm. Associates with nuclear microtubules during mitosis. Binds to microtubules of the spindle and spindle-poles and to midzone microtubules out of which the phragmoplast emerges. Not associated with cortical microtubules. Required for endosperm cellularization. May be bound and sequestered by GRF5 in an inactive soluble form during the early stages of mitosis. {ECO:0000269|PubMed:19151224, ECO:0000269|PubMed:22535409}. 52593,49075 Protein ENDOSPERM DEFECTIVE 1 (Protein EMBRYO DEFECTIVE 3116) (QWRF motif-containing protein 5),QWRF motif-containing protein 6 cytoplasm [GO:0005737]; nuclear microtubule [GO:0005880]; nucleus [GO:0005634]; cell division [GO:0051301]; endosperm cellularization [GO:0010342]; endosperm development [GO:0009960]; microtubule cytoskeleton organization [GO:0000226]; seed development [GO:0048316] TISSUE SPECIFICITY: Highly expressed in young siliques, seedlings, flower buds and open flowers. Weak expression in roots, and not detected in older siliques and mature leaves. Expressed in the embryo sac in prefertilization ovules and in seeds following fertilization. Detected in both embryo up to the heart stage and endosperm throughout most of the syncytial phase of endosperm development. Not detected in the cellularized endosperm, when cell division has ceased. {ECO:0000269|PubMed:19151224}. locus:2051869;,locus:2080522; AT2G44190,AT3G60000 Family of unknown function (DUF566) Os09g0286300 protein A0A0P0XKT1 A0A0P0XKT1_ORYSJ Os09g0286300 OSNPB_090286300 ENOG411DZEB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0459300 protein (cDNA clone:J033036F14, full insert sequence) Q6ZBZ8 Q6ZBZ8_ORYSJ Os08g0459300 Os08g0459300 OsJ_27570 OSNPB_080459300 P0493A04.32 ENOG411DZEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) Lipase family protein, expressed (Os03g0830900 protein) (Putative heat-shock protein) (Putative lipase) Q850Z2 Q850Z2_ORYSJ OSJNBb0027B08.13 LOC_Os03g61540 Os03g0830900 OsJ_13224 OSJNBa0078D06.15 OSNPB_030830900 ENOG411DZEX F18K10.11 Q9LPP3 Q9LPP3_ARATH F18K10.11 protein (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g10530) R-ATH-6791226; 60261 F18K10.11 protein (Transducin/WD40 repeat-like superfamily protein) (Uncharacterized protein At3g10530) 90S preribosome [GO:0030686]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2075750; AT3G10530 U3 small nucleolar RNA-associated protein Os01g0183100 protein (Putative BING4-like protein) (cDNA clone:J023063M08, full insert sequence) Q9LGT2 Q9LGT2_ORYSJ Os01g0183100 Os01g0183100 OsJ_00645 OSNPB_010183100 P0489A01.9 ENOG411DZEZ ASAT1 Q9SV07 ASAT1_ARATH Acyl-CoA--sterol O-acyltransferase 1 (EC 2.3.1.-) (Sterol O-acyltransferase 1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:19923239}. Low sterol ester levels in leaves-H. Schaller-2009 FUNCTION: Involved in the esterification of cycloartenol. Not implicated in the formation of sterol esters in flowers or during seed maturation. Has a substrate preference toward saturated fatty acyl donors (16:0 > 18:0 > 16:1 > 18:1). Does not require triacyglycerols (TAGs) as a fatty acyl donor, and is unable to acylate diacylglycerol to produce TAG. {ECO:0000269|PubMed:17885082, ECO:0000269|PubMed:19923239}. ARA:AT3G51970-MONOMER; 2.3.1.- 39320 Acyl-CoA--sterol O-acyltransferase 1 (EC 2.3.1.-) (Sterol O-acyltransferase 1) integral component of membrane [GO:0016021]; O-acyltransferase activity [GO:0008374]; sterol catabolic process [GO:0016127]; sterol esterification [GO:0034434] DEVELOPMENTAL STAGE: Increased expression during seed development and as pollen development proceeded from uninucleate microspore to mature pollen. {ECO:0000269|PubMed:15535861}. locus:2083780; AT3G51970 o-acyltransferase NA NA NA NA NA NA NA ENOG411DZEU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox Os05g0439400 protein,Os02g0542800 protein Q75HW6,A3A7S7 Q75HW6_ORYSJ,A3A7S7_ORYSJ Os05g0439400 OsJ_18687 OSJNBb0042J17.16 OSNPB_050439400,Os02g0542800 OsJ_07063 OSNPB_020542800 ENOG411DZET WRKY21 O04336 WRK21_ARATH Probable WRKY transcription factor 21 (WRKY DNA-binding protein 21) FUNCTION: Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. 43005 Probable WRKY transcription factor 21 (WRKY DNA-binding protein 21) nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; glucosinolate metabolic process [GO:0019760]; transcription, DNA-templated [GO:0006351] locus:2064377; AT2G30590 WRKY transcription factor Os12g0597700 protein (WRKY DNA binding domain containing protein, expressed),Os12g0597700 protein Q2QMN4,A0A0P0YCD0 Q2QMN4_ORYSJ,A0A0P0YCD0_ORYSJ Os12g0597700 LOC_Os12g40570 Os12g0597700 OSNPB_120597700,Os12g0597700 OSNPB_120597700 ENOG411DZEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os08g0519900 protein A0A0P0XI93 A0A0P0XI93_ORYSJ Os08g0519900 OSNPB_080519900 ENOG411DZEQ RBCX2,RbcX2 Q8L9X2,A0A1P8BCG6 RBCX2_ARATH,A0A1P8BCG6_ARATH Chaperonin-like RbcX protein 2, chloroplastic (AtRBCX2),Chaperonin-like RbcX protein FUNCTION: Chaperone involved in RuBisCO assembly process. {ECO:0000269|PubMed:21922322}. 23476,17482 Chaperonin-like RbcX protein 2, chloroplastic (AtRBCX2),Chaperonin-like RbcX protein chloroplast stroma [GO:0009570]; protein binding involved in protein folding [GO:0044183]; chaperone-mediated protein folding [GO:0061077] locus:505006621; AT5G19855 RbcX protein Expressed protein (Os03g0807900 protein) (cDNA clone:006-202-A06, full insert sequence) (cDNA clone:J023049O16, full insert sequence) Q84M38 Q84M38_ORYSJ Os03g0807900 LOC_Os03g59320 Os03g0807900 OsJ_13043 OSJNBa0059E14.7 OSNPB_030807900 ENOG411DZES Q9M0S1,Q9LE70,F4JJA3 Q9M0S1_ARATH,Q9LE70_ARATH,F4JJA3_ARATH Uncharacterized protein At4g09060,Early endosome antigen (F10B6.4) (T5E21.16),Uncharacterized protein 39264,34193,42356 Uncharacterized protein At4g09060,Early endosome antigen (F10B6.4) (T5E21.16),Uncharacterized protein cytosol [GO:0005829],membrane [GO:0016020] locus:2006722;,locus:2122383; AT4G09060,AT1G14680 NA Os02g0831400 protein (Fragment) A0A0P0VRQ3 A0A0P0VRQ3_ORYSJ Os02g0831400 OSNPB_020831400 ENOG411DZER PAS2 Q8VZB2,F4KGW0 HACD_ARATH,F4KGW0_ARATH Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 (EC 4.2.1.134) (3-hydroxyacyl-CoA dehydratase PASTICCINO 2) (AtPAS2) (HACD) (HCD) (Protein PEPINO) (PEP) (Protein tyrosine phosphatase-like protein),Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.134) DISRUPTION PHENOTYPE: Embryo lethal when homozygote. {ECO:0000269|PubMed:18799749, ECO:0000269|PubMed:21896643}. Segregates 25% embryo lethal. Embryo defective; Cotyledon-J.D. Faure; R. Torres-Ruiz-2003 FUNCTION: Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates in the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. May be an anti-phosphatase that prevents CDKA-1 dephosphorylation and activation. Involved in the hormonal control of cell division and differentiation. Required for proliferation control of meristematic and non-meristematic cells. Negative regulator of the cell cycle. {ECO:0000269|PubMed:12459923, ECO:0000269|PubMed:12472687, ECO:0000269|PubMed:12857804, ECO:0000269|PubMed:16698944, ECO:0000269|PubMed:18799749, ECO:0000269|PubMed:21896643}.,FUNCTION: Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. {ECO:0000256|RuleBase:RU363109}. MISCELLANEOUS: Plants with reduced exprssion of PAS2 show impaired embryo and seedling development associated with cell de-differentiation and proliferation. Root growth is reduced, due to a delay in cell plate establishment during cytokinesis (PubMed:21896643). {ECO:0000305|PubMed:21896643}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. {ECO:0000305|PubMed:18799749}.,PATHWAY: Lipid metabolism; fatty acid biosynthesis. {ECO:0000256|RuleBase:RU363109}. ARA:AT5G10480-MONOMER;MetaCyc:AT5G10480-MONOMER; 4.2.1.134; 4.2.1.134 25327,26414 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 (EC 4.2.1.134) (3-hydroxyacyl-CoA dehydratase PASTICCINO 2) (AtPAS2) (HACD) (HCD) (Protein PEPINO) (PEP) (Protein tyrosine phosphatase-like protein),Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.134) integral component of endoplasmic reticulum membrane [GO:0030176]; nucleus [GO:0005634]; 3-hydroxy-arachidoyl-CoA dehydratase activity [GO:0102343]; 3-hydroxy-behenoyl-CoA dehydratase activity [GO:0102344]; 3-hydroxy-lignoceroyl-CoA dehydratase activity [GO:0102345]; 3-hydroxyacyl-CoA dehydratase activity [GO:0018812]; fatty acid elongation [GO:0030497]; multicellular organism development [GO:0007275]; sphingolipid biosynthetic process [GO:0030148],cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; 3-hydroxy-arachidoyl-CoA dehydratase activity [GO:0102343]; 3-hydroxy-behenoyl-CoA dehydratase activity [GO:0102344]; 3-hydroxy-lignoceroyl-CoA dehydratase activity [GO:0102345]; protein tyrosine phosphatase activity [GO:0004725]; cell differentiation [GO:0030154]; negative regulation of developmental growth [GO:0048640]; negative regulation of peptidyl-tyrosine phosphorylation [GO:0050732]; regulation of cell division [GO:0051302]; very long-chain fatty acid biosynthetic process [GO:0042761] TISSUE SPECIFICITY: High expression in young seedlings, roots, root tips, flowers and young siliques. Lower levels in leaves and stems. {ECO:0000269|PubMed:12472687, ECO:0000269|PubMed:21896643}. locus:2142429; AT5G10480 3-hydroxyacyl-CoA dehydratase PASTICCINO Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A (EC 4.2.1.134) (3-hydroxyacyl-CoA dehydratase PASTICCINO 2A) (HACD) (PAS2A) (Protein tyrosine phosphatase-like protein),Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B (EC 4.2.1.134) (3-hydroxyacyl-CoA dehydratase PASTICCINO 2B) (HACD) (PAS2B) (Protein tyrosine phosphatase-like protein),Os08g0393600 protein (cDNA clone:J013134O04, full insert sequence),Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.134) Q7XSZ4,Q5ZEJ0,B7EEJ8,Q5ZEI3,A0A0P0UYR3,A0A0P0UY20 HACDA_ORYSJ,HACDB_ORYSJ,B7EEJ8_ORYSJ,Q5ZEI3_ORYSJ,A0A0P0UYR3_ORYSJ,A0A0P0UY20_ORYSJ PAS2A Os04g0271200 LOC_Os04g20280 OsJ_14083 OSJNBb0056F09.1 OSJNBb0067G11.14,PAS2B Os01g0150200 LOC_Os01g05694 OsJ_000378 OsJ_00388 P0009G03.5,Os08g0393600 OSNPB_080393600,Os01g0150800 Os01g0150800 OSNPB_010150800 P0009G03.12,Os01g0150400 OSNPB_010150400,Os01g0150500 OSNPB_010150500 FUNCTION: Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates in the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. May be an anti-phosphatase that prevents CDKA-1 dephosphorylation and activation. Involved in the hormonal control of cell division and differentiation. Required for proliferation control of meristematic and non-meristematic cells. Negative regulator of the cell cycle. {ECO:0000250|UniProtKB:Q8VZB2}.,FUNCTION: Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. {ECO:0000256|RuleBase:RU363109}. ENOG411DZE9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fusaric acid resistance protein family Os01g0221600 protein,Aluminum-activated malate transporter-like (Os01g0737500 protein) (cDNA clone:001-205-E06, full insert sequence) Q9LDE9,Q5JND7 Q9LDE9_ORYSJ,Q5JND7_ORYSJ Os01g0221600 OsJ_00918 OSNPB_010221600 P0443E05.4 P0483F08.41,Os01g0737500 Os01g0737500 OSJNBb0021A09.17 OSNPB_010737500 ENOG411DZE8 Q8W106,F4IXS2,A0A1I9LR72 Q8W106_ARATH,F4IXS2_ARATH,A0A1I9LR72_ARATH AT3g27930/K24A2_2 (Beta-galactosidase),Beta-galactosidase 47197,46584,44849 AT3g27930/K24A2_2 (Beta-galactosidase),Beta-galactosidase integral component of mitochondrial outer membrane [GO:0031307]; voltage-gated anion channel activity [GO:0008308]; positive regulation of leaf senescence [GO:1900057] locus:2086859; AT3G27930 NA Os05g0577900 protein (cDNA clone:002-104-D11, full insert sequence),Os05g0577800 protein (cDNA clone:J033112C12, full insert sequence) Q0DFP9,Q6L5F2 Q0DFP9_ORYSJ,Q6L5F2_ORYSJ Os05g0577900 Os05g0577900 OSNPB_050577900,Os05g0577800 OJ1126_B10.10 OSNPB_050577800 ENOG411DZE5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411DZE6 SAP Q9FKH1 SAP_ARATH Transcriptional regulator STERILE APETALA Abnormal flower morphology-G. Angenent-1999 FUNCTION: Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule. MISCELLANEOUS: Mutations in the SAP gene result in the ectopic expression of AGAMOUS, leading to partial homeotic transformation of the external floral organs. Mutations affect equally ovule development and cause floral sterility. 49306 Transcriptional regulator STERILE APETALA nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; megasporogenesis [GO:0009554]; positive regulation of organ growth [GO:0046622]; protein catabolic process [GO:0030163]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia. locus:2177271; AT5G35770 Transcriptional regulator STERILE NA NA NA NA NA NA NA ENOG411DZE0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411DZE3 AHL6 Q9LVB0,A0A1P8BGC9 AHL6_ARATH,A0A1P8BGC9_ARATH AT-hook motif nuclear-localized protein 6,AT hook motif DNA-binding family protein FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 42804,30636 AT-hook motif nuclear-localized protein 6,AT hook motif DNA-binding family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2167988; AT5G62260 Domain of unknown function (DUF296) NA NA NA NA NA NA NA ENOG411EI5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0QR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Aminoacyl-t-RNA synthetase Os03g0802800 protein (Fragment) Q0DMM0 Q0DMM0_ORYSJ Os03g0802800 OSNPB_030802800 ENOG411E0QT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os03g0283900 protein (Serine/threonine-protein kinase RLCKVII, putative, expressed) (cDNA clone:001-128-C11, full insert sequence) Q8H8T7 Q8H8T7_ORYSJ Os03g0283900 LOC_Os03g17550 Os03g0283900 OSNPB_030283900 ENOG411E0QU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transport factor 2 (NTF2) domain Os04g0510500 protein A0A0P0WCA8 A0A0P0WCA8_ORYSJ Os04g0510500 OSNPB_040510500 ENOG411E0QV TBL43 Q6DR10,A0A1P8B1K5 TBL43_ARATH,A0A1P8B1K5_ARATH Protein trichome birefringence-like 43,TRICHOME BIREFRINGENCE-LIKE 43 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 41248,30801 Protein trichome birefringence-like 43,TRICHOME BIREFRINGENCE-LIKE 43 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554] locus:2052856; AT2G30900 Pfam:DUF231 NA NA NA NA NA NA NA ENOG411E0QW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os04g0111100 protein,Os04g0114900 protein A0A0P0W613,A0A0P0W6A0 A0A0P0W613_ORYSJ,A0A0P0W6A0_ORYSJ Os04g0111100 OSNPB_040111100,Os04g0114900 OSNPB_040114900 ENOG411E0QC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os09g0311600 protein,Os09g0311400 protein,Os01g0956800 protein Q0J2R4,A3BXA1,A3A1N8 Q0J2R4_ORYSJ,A3BXA1_ORYSJ,A3A1N8_ORYSJ Os09g0311600 OSNPB_090311600,Os09g0311400 OsJ_28813 OSNPB_090311400,Os01g0956800 OsJ_04816 OSNPB_010956800 ENOG411E0QD Q8L868 E1311_ARATH Glucan endo-1,3-beta-glucosidase 11 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 11) ((1->3)-beta-glucanase 11) (Beta-1,3-endoglucanase 11) (Beta-1,3-glucanase 11) 3.2.1.39 45421 Glucan endo-1,3-beta-glucosidase 11 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 11) ((1->3)-beta-glucanase 11) (Beta-1,3-endoglucanase 11) (Beta-1,3-glucanase 11) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975]; cell communication [GO:0007154]; cell wall organization [GO:0071555]; defense response [GO:0006952] locus:2037905; AT1G32860 glucan endo-13-beta-glucosidase NA NA NA NA NA NA NA ENOG411E0QE Q3EB59,Q1PFB8 CSPLF_ARATH,CSPL5_ARATH CASP-like protein 3A1 (AtCASPL3A1),CASP-like protein 3A2 (AtCASPL3A2) 23110,20011 CASP-like protein 3A1 (AtCASPL3A1),CASP-like protein 3A2 (AtCASPL3A2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; iron-sulfur cluster binding [GO:0051536] locus:2094957;,locus:2019828; AT3G16300,AT1G79780 CASP-like protein CASP-like protein 3A1 (OsCASPL3A1) Q5JM57 CSPLC_ORYSJ Os01g0725400 LOC_Os01g52610 OsJ_03314 P0022F10.36 P0042A10.11 ENOG411E0QF PCMP-E26 Q7XJN6 PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720 95393 Pentatricopeptide repeat-containing protein At2g40720 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2064828; AT2G40720 repeat-containing protein NA NA NA NA NA NA NA ENOG411E0QG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Os02g0202400 protein (Putative Brittle-1 protein, chloroplast),Os06g0602700 protein Q6Z782,A0A0P0WYD6 Q6Z782_ORYSJ,A0A0P0WYD6_ORYSJ Os02g0202400 OJ1135_F06.4 OSNPB_020202400 P0419A09.38,Os06g0602700 OSNPB_060602700 ENOG411E0QH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transcription factor 6b-interacting protein 1-like (Os01g0674000 protein) (cDNA clone:J013000M14, full insert sequence) Q8LJG7 Q8LJG7_ORYSJ Os01g0674000 OsJ_02978 OSNPB_010674000 P0485G01.27 ENOG411E0QI Q9LJG5 Q9LJG5_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At3g14200) 25641 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At3g14200) locus:2087492; AT3G14200 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411E0QK GBF3 P42776,F4II62 GBF3_ARATH,F4II62_ARATH G-box-binding factor 3 (bZIP transcription factor 55) (AtbZIP55),G-box binding factor 3 FUNCTION: Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. 41114,38597 G-box-binding factor 3 (bZIP transcription factor 55) (AtbZIP55),G-box binding factor 3 cytosol [GO:0005829]; nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; response to abscisic acid [GO:0009737]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}. locus:2063020; AT2G46270 Common plant regulatory factor Os05g0569300 protein (Putative G-box binding factor) (Putative bZIP protein) Q6AUN3 Q6AUN3_ORYSJ Os05g0569300 Os05g0569300 OJ1781_H11.25 OSJNBa0040E06.7 OSNPB_050569300 ENOG411E0QM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os08g0190700 protein,Os08g0190500 protein A0A0P0XCP3,A0A0P0XCR6 A0A0P0XCP3_ORYSJ,A0A0P0XCR6_ORYSJ Os08g0190700 OSNPB_080190700,Os08g0190500 OSNPB_080190500 ENOG411E0Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Subtilase family NA NA NA NA NA NA NA ENOG411E0Q2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0319200 protein A0A0P0VWW2 A0A0P0VWW2_ORYSJ Os03g0319200 OSNPB_030319200 ENOG411E0Q3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BRCT Os01g0939300 protein (Pax transcription activation domain interacting protein PTIP-like) (cDNA clone:J033024C23, full insert sequence) Q5JLP9 Q5JLP9_ORYSJ Os01g0939300 Os01g0939300 B1150F11.13 OsJ_04713 OSNPB_010939300 P0504E02.37 ENOG411E0Q4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os10g0329900 protein,Os10g0326900 protein (Fragment),Os10g0327000 protein A0A0P0XT61,A0A0P0XSR5,A0A0P0XT91 A0A0P0XT61_ORYSJ,A0A0P0XSR5_ORYSJ,A0A0P0XT91_ORYSJ Os10g0329900 OSNPB_100329900,Os10g0326900 OSNPB_100326900,Os10g0327000 OSNPB_100327000 ENOG411E0Q5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Stress responsive protein Os07g0683600 protein A0A0N7KP29 A0A0N7KP29_ORYSJ Os07g0683600 OSNPB_070683600 ENOG411E0Q6 PAE10,PAE2,PAE3,PAE12 Q66GM8,F4I839,O80731,Q9SFF6,F4J9L0 PAE10_ARATH,PAE2_ARATH,PAE3_ARATH,PAE12_ARATH,F4J9L0_ARATH Pectin acetylesterase 10 (EC 3.1.1.-),Pectin acetylesterase 2 (EC 3.1.1.-),Pectin acetylesterase 3 (EC 3.1.1.-),Pectin acetylesterase 12 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:25115560}. FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000250|UniProtKB:B9DFR3}.,FUNCTION: Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. {ECO:0000256|RuleBase:RU363114}. 3.1.1.- 46562,49915,45944,46327,34391 Pectin acetylesterase 10 (EC 3.1.1.-),Pectin acetylesterase 2 (EC 3.1.1.-),Pectin acetylesterase 3 (EC 3.1.1.-),Pectin acetylesterase 12 (EC 3.1.1.-),Pectin acetylesterase (EC 3.1.1.-) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; pectin acetylesterase activity [GO:0052793]; cell wall organization [GO:0071555],cell wall [GO:0005618]; extracellular region [GO:0005576]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] locus:2146814;,locus:2206490;,locus:2041429;,locus:2074459; AT5G26670,AT1G57590,AT2G46930,AT3G05910 protein notum homolog NA NA NA NA NA NA NA ENOG411E0Q7 DJ1E Q9ZV19 DJ1E_ARATH DJ-1 protein homolog E (AtDJ-1E) (Protein YELLOW-LEAF-SPECIFIC GENE 5) FUNCTION: May be involved in oxidative stress response. {ECO:0000250}. 42730 DJ-1 protein homolog E (AtDJ-1E) (Protein YELLOW-LEAF-SPECIFIC GENE 5) DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence. {ECO:0000269|PubMed:11230571}. TISSUE SPECIFICITY: Expressed in roots and cauline leaves. {ECO:0000269|PubMed:11230571}. locus:2064955; AT2G38860 DJ-1/PfpI family Os11g0591550 protein A0A0P0Y412 A0A0P0Y412_ORYSJ Os11g0591550 OSNPB_110591550 ENOG411E69J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E69K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0627400 protein Q8LI25 Q8LI25_ORYSJ OJ1339_F05.141 P0506F02.109 Os07g0627400 OSNPB_070627400 ENOG411E69H EPF2 Q8LC53 EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2 [Cleaved into: MEPF2] DISRUPTION PHENOTYPE: Increased small pavement cell (non-stomatal) and stomatal cell density. Inversion in CO(2) control of stomatal development resulting in an increased number of stomata at elevated CO(2) concentration. {ECO:0000269|PubMed:19398336, ECO:0000269|PubMed:19435754, ECO:0000269|PubMed:25043023}. stomatal development abnormal Increased stomatal and pavement cell density-T. Kakimoto-2009 FUNCTION: Controls stomatal patterning. Regulates the number of cells that enter, and remain in, the stomatal lineage by inhibiting protodermal cells from adopting the meristemoid mother cell (MMC) fate in a non-cell-autonomous manner. Mediates stomatal development inhibition. MEPF2: mobile signal controlling stomatal development in a non-cell-autonomous manner (PubMed:22241782). Uses ERECTA as major receptor (PubMed:22241782). Inactivated by cleavage by CRSP (AC Q9LNU1) (PubMed:25043023). May act by competing with somatogen (AC Q9SV72) for the same receptor, TMM (AC Q9SSD1) (PubMed:22027592). {ECO:0000269|PubMed:19398336, ECO:0000269|PubMed:19435754, ECO:0000269|PubMed:22241782, ECO:0000269|PubMed:25043023, ECO:0000303|PubMed:22027592}. 13317 Protein EPIDERMAL PATTERNING FACTOR 2 [Cleaved into: MEPF2] extracellular region [GO:0005576]; protein kinase binding [GO:0019901]; guard cell differentiation [GO:0010052]; negative regulation of stomatal complex development [GO:2000122]; plant epidermis morphogenesis [GO:0090626]; stomatal complex development [GO:0010374] TISSUE SPECIFICITY: Expressed in leaves, especially by the MMCs and their early descendants cells (stomatal lineage cells) including guard mother cells (GMCs). {ECO:0000269|PubMed:19398336, ECO:0000269|PubMed:19435754}. locus:505006168; AT1G34245 protein EPIDERMAL PATTERNING FACTOR Os04g0637300 protein A0A0P0WF97 A0A0P0WF97_ORYSJ Os04g0637300 OSNPB_040637300 ENOG411E69I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0130900 protein (cDNA clone:001-120-D04, full insert sequence) Q9LGC2 Q9LGC2_ORYSJ Os01g0130900 OsJ_00242 OSNPB_010130900 P0504H10.13 ENOG411E69N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Major Facilitator NA NA NA NA NA NA NA ENOG411E69M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E69B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E69C ERF025 Q9FJ90 ERF25_ARATH Ethylene-responsive transcription factor ERF025 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 25106 Ethylene-responsive transcription factor ERF025 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; defense response to fungus [GO:0050832]; ethylene-activated signaling pathway [GO:0009873]; glucosinolate metabolic process [GO:0019760]; transcription, DNA-templated [GO:0006351] locus:2173063; AT5G52020 Transcription factor NA NA NA NA NA NA NA ENOG411E69A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411E69F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411E69G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0313800 protein A0A0P0VXE5 A0A0P0VXE5_ORYSJ Os03g0313800 OSNPB_030313800 ENOG411E69D Q1PDZ2 Q1PDZ2_ARATH Transmembrane protein 16652 Transmembrane protein integral component of membrane [GO:0016021] locus:2183324; AT5G07490 NA NA NA NA NA NA NA NA ENOG411E69E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Polyadenylate-binding protein-interacting protein NA NA NA NA NA NA NA ENOG411E69Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E69X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 NA NA NA NA NA NA NA ENOG411E69Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E69R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin NA NA NA NA NA NA NA ENOG411E69S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem protein (Os10g0414000 protein) (cDNA, clone: J075155G16, full insert sequence),No apical meristem protein, expressed (Os10g0413700 protein),Os01g0339500 protein (cDNA clone:J013052A02, full insert sequence),Expressed protein (Os10g0413900 protein) (cDNA clone:002-173-H02, full insert sequence),Os10g0395700 protein,Os10g0402100 protein,Os10g0395650 protein,Os10g0396050 protein,Os10g0396000 protein,Os10g0402150 protein,Os10g0401550 protein Q7XEN6,Q7XEN9,Q0JN18,Q338D1,A0A0P0XUK7,A0A0N7KRR4,A0A0P0XUB2,A0A0P0XUT8,A0A0N7KRQ9,A0A0P0XTV5,A0A0P0XTZ1 Q7XEN6_ORYSJ,Q7XEN9_ORYSJ,Q0JN18_ORYSJ,Q338D1_ORYSJ,A0A0P0XUK7_ORYSJ,A0A0N7KRR4_ORYSJ,A0A0P0XUB2_ORYSJ,A0A0P0XUT8_ORYSJ,A0A0N7KRQ9_ORYSJ,A0A0P0XTV5_ORYSJ,A0A0P0XTZ1_ORYSJ Os10g0414000 LOC_Os10g27390 Os10g0414000 OSNPB_100414000,LOC_Os10g27360 Os10g0413700 OSNPB_100413700,Os01g0339500 Os01g0339500 OSNPB_010339500,Os10g0413900 LOC_Os10g27380 Os10g0413900 OSNPB_100413900,Os10g0395700 OSNPB_100395700,Os10g0402100 OSNPB_100402100,Os10g0395650 OSNPB_100395650,Os10g0396050 OSNPB_100396050,Os10g0396000 OSNPB_100396000,Os10g0402150 OSNPB_100402150,Os10g0401550 OSNPB_100401550 ENOG411E69P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411E69Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os11g0241832 protein Q53Q19 Q53Q19_ORYSJ Os11g0241832 LOC_Os11g13770 OSNPB_110241832 ENOG411E69V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0675400 protein,Os05g0567000 protein A0A0P0V6I9,A0A0P0WR84 A0A0P0V6I9_ORYSJ,A0A0P0WR84_ORYSJ Os01g0675400 OSNPB_010675400,Os05g0567000 OSNPB_050567000 ENOG411E69W PRE6 Q8GW32 PRE6_ARATH Transcription factor PRE6 (Basic helix-loop-helix protein 163) (AtbHLH163) (bHLH 163) (Protein KIDARI) (Protein PACLOBUTRAZOL RESISTANCE 6) (bHLH transcription factor bHLH163) FUNCTION: Atypical and probable non DNA-binding bHLH transcription factor that regulates light-mediated responses in day light conditions by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. Forms non-functional heterodimers with HFR1, causing liberation and activation of PIF4 from the transcriptionally inactive HFR1-PIF4 complex. {ECO:0000269|PubMed:16786307, ECO:0000269|PubMed:23224238}. MISCELLANEOUS: Gain-of-function mutants kdr-D (T-DNA tagging) show long hypocotyls, pale green and slightly narrow leaves, elongated petioles and early flowering. They are not sensitive to the gibberellin inhibitor paclobutrazol during seed germination (PubMed:16786307). {ECO:0000305|PubMed:16786307}. 10718 Transcription factor PRE6 (Basic helix-loop-helix protein 163) (AtbHLH163) (bHLH 163) (Protein KIDARI) (Protein PACLOBUTRAZOL RESISTANCE 6) (bHLH transcription factor bHLH163) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416]; transcription, DNA-templated [GO:0006351] locus:1005716685; AT1G26945 transcription factor bHLH135-like NA NA NA NA NA NA NA ENOG411E69T MAC12.12 Q9FFY2,A0A1P8BEI2 Q9FFY2_ARATH,A0A1P8BEI2_ARATH Emb|CAB86673.1 (GRF zinc finger / Zinc knuckle protein),GRF zinc finger / Zinc knuckle protein 46313,49848 Emb|CAB86673.1 (GRF zinc finger / Zinc knuckle protein),GRF zinc finger / Zinc knuckle protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2159083; AT5G13920 GRF zinc finger NA NA NA NA NA NA NA ENOG411E69U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0148100 protein Q5VP34 Q5VP34_ORYSJ Os06g0148100 OSNPB_060148100 P0036F10.44 P0624B04.4 ENOG411E698 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF218 domain NA NA NA NA NA NA NA ENOG411E699 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0578200 protein) (cDNA clone:001-047-C01, full insert sequence) (cDNA clone:J013096L16, full insert sequence) Q10HR9 Q10HR9_ORYSJ LOC_Os03g38120 Os03g0578200 OsJ_11531 OSNPB_030578200 ENOG411E692 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0742766 protein B9EZL9 B9EZL9_ORYSJ Os01g0742766 OsJ_03411 OSNPB_010742766 ENOG411E693 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0141700 protein (cDNA clone:J023024E16, full insert sequence) (cDNA clone:J023114I17, full insert sequence),Os08g0141600 protein,Os08g0142200 protein Q6YZ05,A0A0P0XBL1,A0A0P0XBJ7 Q6YZ05_ORYSJ,A0A0P0XBL1_ORYSJ,A0A0P0XBJ7_ORYSJ Os08g0141700 Os08g0141700 OsJ_26005 OSNPB_080141700 P0473D02.20,Os08g0141600 OSNPB_080141600,Os08g0142200 OSNPB_080142200 ENOG411E690 Q9FRS7 Q9FRS7_ARATH At1g08580 (F22O13.6) 14053 At1g08580 (F22O13.6) locus:2025525; AT1G08580 NA Os02g0604100 protein (cDNA clone:J033088E11, full insert sequence) Q6K8J0 Q6K8J0_ORYSJ Os02g0604100 OJ1669_F01.34 OSNPB_020604100 ENOG411E691 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARID Os10g0446400 protein (Fragment) A0A0N7KRV5 A0A0N7KRV5_ORYSJ Os10g0446400 OSNPB_100446400 ENOG411E696 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain containing protein, expressed (Os10g0130200 protein),Os02g0272100 protein Q8L544,A0A0P0VHM0 Q8L544_ORYSJ,A0A0P0VHM0_ORYSJ OSJNAb0072F04.6 LOC_Os10g04020 Os10g0130200 OSJNBb0072F04.12 OSNPB_100130200,Os02g0272100 OSNPB_020272100 ENOG411E697 GRI Q9LNN7 GRI_ARATH Protein GRIM REAPER (Stigma-specific STIG1-like protein GRI) [Cleaved into: GRIp] increased ROS-induced cell death (ROS: reactive oxygen species); decreased seed content; more resistant to bacterial pathogen Pseudomonas syringae FUNCTION: Involved in the regulation of cell death induced by extracellular reactive oxygen species (PubMed:19279211, PubMed:25398910). Only the processed peptide, and not the full length GRI can bind in vivo to the extracellular domain of the receptor PRK5 (PubMed:25398910). The GRIp-induced cell death is superoxide and salicylic acid dependent (PubMed:19279211). {ECO:0000269|PubMed:19279211, ECO:0000269|PubMed:25398910}. 18607 Protein GRIM REAPER (Stigma-specific STIG1-like protein GRI) [Cleaved into: GRIp] apoplast [GO:0048046]; extracellular space [GO:0005615]; defense response to bacterium [GO:0042742]; jasmonic acid mediated signaling pathway [GO:0009867]; positive regulation of cell death [GO:0010942]; regulation of jasmonic acid biosynthetic process [GO:0080141]; regulation of salicylic acid biosynthetic process [GO:0080142]; response to ozone [GO:0010193]; salicylic acid mediated signaling pathway [GO:0009863]; seed development [GO:0048316] TISSUE SPECIFICITY: Highly expressed in flowers, and at very low levels in leaves. {ECO:0000269|PubMed:19279211}. locus:2037037; AT1G53130 Stigma-specific protein Stig1 NA NA NA NA NA NA NA ENOG411E694 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E695 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF861) Os10g0465950 protein (Fragment) A0A0P0XVS2 A0A0P0XVS2_ORYSJ Os10g0465950 OSNPB_100465950 ENOG411DS5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box LRR-repeat protein Os07g0276000 protein (Putative ribosomal RNA apurinic site specific lyase) (cDNA clone:J023027F21, full insert sequence),F-box domain containing protein, expressed (Os12g0496700 protein),Os07g0277500 protein,Os07g0285900 protein,Os02g0297900 protein,Os07g0277000 protein,Os07g0277066 protein Q69PU6,Q2QQE3,B9FWM5,A0A0P0X4R4,A0A0P0VHY3,A0A0P0X4P3,A0A0P0X4D4 Q69PU6_ORYSJ,Q2QQE3_ORYSJ,B9FWM5_ORYSJ,A0A0P0X4R4_ORYSJ,A0A0P0VHY3_ORYSJ,A0A0P0X4P3_ORYSJ,A0A0P0X4D4_ORYSJ Os07g0276000 OSJNBa0091L05.18 OSNPB_070276000,Os12g0496700 LOC_Os12g31340 OSNPB_120496700,Os07g0277500 OsJ_23838 OSNPB_070277500,Os07g0285900 OSNPB_070285900,Os02g0297900 OSNPB_020297900,Os07g0277000 OSNPB_070277000,Os07g0277066 OSNPB_070277066 ENOG411DS5B VAR3 Q8S9K3 VAR3_ARATH Zinc finger protein VAR3, chloroplastic (Organelle Zinc finger 1) (Protein VARIEGATED 3) DISRUPTION PHENOTYPE: Defects result in variegated plants that have leaves consisting of normal green and also white or yellow sectors in which chloroplast development is retarded or disrupted (PubMed:15340011, PubMed:25768119). Mutant plants exhibit severe editing defects in chloroplastic transcripts (PubMed:25768119). {ECO:0000269|PubMed:15340011, ECO:0000269|PubMed:25768119}. FUNCTION: Probable component of some protein complex required for chloroplast and palisade cell development (PubMed:15340011). Involved in C-to-U editing of chloroplastic RNA. Controls a large number of chloroplastic editing sites. Binds the editing recognition trans-factors PCMP-H51/CRR28 and PCMP-H12/OTP82 (PubMed:25768119). {ECO:0000269|PubMed:15340011, ECO:0000269|PubMed:25768119}. 85945 Zinc finger protein VAR3, chloroplastic (Organelle Zinc finger 1) (Protein VARIEGATED 3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; metal ion binding [GO:0046872]; chloroplast mRNA modification [GO:1900871]; chloroplast organization [GO:0009658]; mRNA processing [GO:0006397] TISSUE SPECIFICITY: Weakly expressed in leaves and roots. {ECO:0000269|PubMed:15340011}. locus:2175921; AT5G17790 zinc finger protein VAR3 NA NA NA NA NA NA NA ENOG411DS5D KIN5D,KIN5A,KIN5C Q9LZU5,F4IIS5,P82266,A0A1P8AY44,F4ILV6 KN5D_ARATH,KN5A_ARATH,KN5C_ARATH,A0A1P8AY44_ARATH,F4ILV6_ARATH Kinesin-like protein KIN-5D,Kinesin-like protein KIN-5A (AtKRP125c) (Protein LOOPHOLE) (Protein RADIALLY SWOLLEN 7),Kinesin-like protein KIN-5C (AtKRP125b),P-loop containing nucleoside triphosphate hydrolases superfamily protein DISRUPTION PHENOTYPE: Radially swollen roots without any depletion or disorientation of cortical microtubules or cellulose microfibrils. {ECO:0000269|PubMed:12361973}. FUNCTION: Responsible for microtubule translocation. May be important for the organization of phragmoplast-specific arrays of microtubules (By similarity). Plays an essential role in stabilizing the mitotic spindle. Required during mitotic cytokinesis (By similarity). {ECO:0000250|UniProtKB:F4IIS5, ECO:0000250|UniProtKB:O23826}.,FUNCTION: Responsible for microtubule translocation. May be important for the organization of phragmoplast-specific arrays of microtubules (By similarity). Plays an essential role in stabilizing the mitotic spindle (PubMed:17652157). Required during mitotic cytokinesis (PubMed:26745275). {ECO:0000250|UniProtKB:O23826, ECO:0000269|PubMed:17652157, ECO:0000269|PubMed:26745275}. R-ATH-6811434;R-ATH-983189; 119009,116223,113683,116295,117496 Kinesin-like protein KIN-5D,Kinesin-like protein KIN-5A (AtKRP125c) (Protein LOOPHOLE) (Protein RADIALLY SWOLLEN 7),Kinesin-like protein KIN-5C (AtKRP125b),P-loop containing nucleoside triphosphate hydrolases superfamily protein cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; spindle [GO:0005819]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; microtubule-based movement [GO:0007018],cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; spindle [GO:0005819]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; cortical microtubule organization [GO:0043622]; microtubule-based movement [GO:0007018]; mitotic cytokinesis [GO:0000281]; mitotic spindle organization [GO:0007052]; unidimensional cell growth [GO:0009826],cytoplasm [GO:0005737]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; spindle [GO:0005819]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; microtubule binding [GO:0008017]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2077132;,locus:2065505;,locus:2049420; AT3G45850,AT2G28620,AT2G36200 125 kDa kinesin-related Kinesin-like protein KIN-5A,Kinesin-like protein KIN-5C Q5W7C6,B7EJ91 KN5A_ORYSJ,KN5C_ORYSJ KIN5A Os05g0117798 LOC_Os05g02670 OsJ_16908 P0496H07.17,KIN5C Os08g0558400 LOC_Os08g44420 FUNCTION: Responsible for microtubule translocation. May be important for the organization of phragmoplast-specific arrays of microtubules (By similarity). Plays an essential role in stabilizing the mitotic spindle. Required during mitotic cytokinesis (By similarity). {ECO:0000250|UniProtKB:F4IIS5, ECO:0000250|UniProtKB:O23826}. ENOG411DS5E CRWN4,LINC4 Q9FLH0,F4JXK3 CRWN4_ARATH,F4JXK3_ARATH Protein CROWDED NUCLEI 4 (Protein LITTLE NUCLEI 4),Branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) DISRUPTION PHENOTYPE: Reduced nuclear size associated with reduced chromocenter number and altered nuclear morphology. Plants lacking both CRWN1 and CRWN4 or both CRWN2 and CRWN4 exhibit slightly smaller rosettes. Plants lacking CRWN1, CRWN2 and CRWN4 or CRWN1, CRWN3 and CRWN4 are extremely stunted and set few seed. {ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514}. FUNCTION: Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity). Required for nucleus structure organization (e.g. size and shape) (PubMed:24308514, PubMed:23396599). Involved in the maintenance of interphase chromocenter integrity and organization (PubMed:24308514). {ECO:0000250|UniProtKB:Q6ZWR6, ECO:0000269|PubMed:23396599, ECO:0000269|PubMed:24308514}. 117086,118186 Protein CROWDED NUCLEI 4 (Protein LITTLE NUCLEI 4),Branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) chloroplast [GO:0009507]; chromocenter [GO:0010369]; cytoplasm [GO:0005737]; nuclear lamina [GO:0005652]; nuclear membrane [GO:0031965]; nuclear periphery [GO:0034399]; nucleoplasm [GO:0005654]; nucleus organization [GO:0006997]; regulation of nucleus size [GO:0097298],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; transaminase activity [GO:0008483] TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, flowers and flower stalks. {ECO:0000269|PubMed:23396599}. locus:2169950;,locus:2169960; AT5G65770,AT5G65780 nuclear matrix constituent protein 1-like Os01g0767000 protein (Fragment) A0A0P0V8N9 A0A0P0V8N9_ORYSJ Os01g0767000 OSNPB_010767000 ENOG411DS5I EBS F4JGB7,F4JL28,A0A1P8B5U4,A0A1P8B5U3 EBSL_ARATH,EBS_ARATH,A0A1P8B5U4_ARATH,A0A1P8B5U3_ARATH Chromatin remodeling protein At4g04260,Chromatin remodeling protein EBS (Protein EARLY BOLTING IN SHORT DAYS),Bromo-adjacent homology (BAH) domain-containing protein DISRUPTION PHENOTYPE: Higher H3K9K14 acetylation in the genomic region of the FT locus leading to an enhanced accumulation (PubMed:25281686, PubMed:12837946). In ebs-2, acceleration of flowering associated with a shorter adult vegetative phase (PubMed:11340178, PubMed:12837946, PubMed:25281686). Other developmental defects include smaller leaves and siliques, reduction in seed dormancy, plant size, and fertility, and partial suppression of LEAFY disruption (e.g. lfy-6) effects (PubMed:11340178, PubMed:25281686). {ECO:0000269|PubMed:11340178, ECO:0000269|PubMed:12837946, ECO:0000269|PubMed:25281686}. Reduced seed dormancy; Early flowering-G. Coupland-2003 FUNCTION: Chromatin remodeling factor that binds to methylated histone (e.g. H3K4me2/3) to prevent their acetylation (e.g. H3K9K14Ac), likely by recruiting histone deacetylase (HDAC) complexes, and thus regulate the transcription of target genes. {ECO:0000250|UniProtKB:Q9FEN9}.,FUNCTION: Chromatin remodeling factor that binds to methylated histone (e.g. H3K4me2/3) to prevent their acetylation (e.g. H3K9K14Ac), likely by recruiting histone deacetylase (HDAC) complexes, and thus regulating the transcription of target genes (PubMed:25281686). Negative regulator in developmental processes in a gibberellic acid- (GA-) dependent manner, such as germination, flowering induction, and flower organ specification, probably by modulating developmental gene expression (PubMed:11340178, PubMed:25281686). Involved in the chromatin-mediated repression of floral initiation and controls genes regulating flowering (PubMed:25281686). Negatively regulates the expression of the floral integrator FT epigenetically, by preventing high levels of H3 acetylation, thus maintaining an inactive chromatin conformation at FT locus (PubMed:25281686, PubMed:12837946). {ECO:0000269|PubMed:11340178, ECO:0000269|PubMed:12837946, ECO:0000269|PubMed:25281686}. 27123,26566,23473,15822 Chromatin remodeling protein At4g04260,Chromatin remodeling protein EBS (Protein EARLY BOLTING IN SHORT DAYS),Bromo-adjacent homology (BAH) domain-containing protein chromatin [GO:0000785]; chromatin silencing complex [GO:0005677]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; chromatin organization [GO:0006325]; chromatin silencing [GO:0006342]; covalent chromatin modification [GO:0016569]; heterochromatin assembly [GO:0031507]; negative regulation of histone acetylation [GO:0035067]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],chromatin [GO:0000785]; chromatin silencing complex [GO:0005677]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; metal ion binding [GO:0046872]; methylated histone binding [GO:0035064]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; chromatin organization [GO:0006325]; chromatin silencing [GO:0006342]; covalent chromatin modification [GO:0016569]; flower development [GO:0009908]; heterochromatin assembly [GO:0031507]; negative regulation of histone acetylation [GO:0035067]; negative regulation of long-day photoperiodism, flowering [GO:0048579]; post-embryonic development [GO:0009791]; regulation of photoperiodism, flowering [GO:2000028]; regulation of transcription, DNA-templated [GO:0006355]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351],chromatin binding [GO:0003682] DEVELOPMENTAL STAGE: Expressed at all stages of development, from seedlings to adult reproductive phase, throughout the shoot apical meristem and young primordia. {ECO:0000269|PubMed:12837946, ECO:0000269|PubMed:25281686}. TISSUE SPECIFICITY: Expressed ubiquitously, with higher levels in floral buds. {ECO:0000269|PubMed:12837946, ECO:0000269|PubMed:25281686}. locus:2137256;,locus:2120693; AT4G04260,AT4G22140 domain-containing protein ES43, putative, expressed (Os03g0799600 protein) (Putative DNA-binding protein) (cDNA clone:006-212-B02, full insert sequence) (cDNA clone:J023128J04, full insert sequence),Os07g0186500 protein (Putative disease resistance protein RPR1),Os07g0186400 protein (Putative ES43 protein),Os08g0421900 protein (Receptor like protein),Os09g0386500 protein (Putative zinc-finger motif) (cDNA clone:001-125-G12, full insert sequence) (cDNA clone:J023141K03, full insert sequence) Q851Q5,Q7XI19,Q7XI22,Q7EYS4,Q6H591 Q851Q5_ORYSJ,Q7XI19_ORYSJ,Q7XI22_ORYSJ,Q7EYS4_ORYSJ,Q6H591_ORYSJ OSJNBa0052F07.18 LOC_Os03g58530 Os03g0799600 OsJ_12973 OSNPB_030799600,Os07g0186500 Os07g0186500 OsJ_23373 OSNPB_070186500 P0506C07.14,Os07g0186400 OJ1339_B08.19 OsJ_23372 OSNPB_070186400 P0506C07.10,Os08g0421900 Os08g0421900 OsJ_27353 OSJNBa0077M12.117 OSNPB_080421900,Os09g0386500 OsJ_29217 OSJNBa0048A13.16 OSNPB_090386500 ENOG411DS5J SYNC3,SYNC1,MKD10.8 Q9SSK1,Q9SW96,Q9M9C7,F4KBM0 SYNC3_ARATH,SYNC1_ARATH,Q9M9C7_ARATH,F4KBM0_ARATH Asparagine--tRNA ligase, cytoplasmic 3 (EC 6.1.1.22) (Asparaginyl-tRNA synthetase 3) (AsnRS 3),Asparagine--tRNA ligase, cytoplasmic 1 (EC 6.1.1.22) (Asparaginyl-tRNA synthetase 1) (AsnRS 1) (Protein EMBRYO DEFECTIVE 2755),Class II aaRS and biotin synthetases superfamily protein (Putative asparaginyl-tRNA synthetase; 13225-12962),Asparaginyl-tRNA synthetase family DISRUPTION PHENOTYPE: Embryo defective. Developmental arrest of the embryo at the cotyledon stage. {ECO:0000305|PubMed:16297076}. Embryo defective; Cotyledon-D. Meinke-2004 ARA:AT1G70980-MONOMER;,ARA:AT5G56680-MONOMER;,ARA:AT1G68420-MONOMER; 6.1.1.22 63700,63783,10105,15168 Asparagine--tRNA ligase, cytoplasmic 3 (EC 6.1.1.22) (Asparaginyl-tRNA synthetase 3) (AsnRS 3),Asparagine--tRNA ligase, cytoplasmic 1 (EC 6.1.1.22) (Asparaginyl-tRNA synthetase 1) (AsnRS 1) (Protein EMBRYO DEFECTIVE 2755),Class II aaRS and biotin synthetases superfamily protein (Putative asparaginyl-tRNA synthetase; 13225-12962),Asparaginyl-tRNA synthetase family cytosol [GO:0005829]; asparagine-tRNA ligase activity [GO:0004816]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; asparaginyl-tRNA aminoacylation [GO:0006421],chloroplast [GO:0009507]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; asparagine-tRNA ligase activity [GO:0004816]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; asparaginyl-tRNA aminoacylation [GO:0006421]; embryo development ending in seed dormancy [GO:0009793]; response to cadmium ion [GO:0046686],aminoacyl-tRNA ligase activity [GO:0004812]; ATP binding [GO:0005524]; tRNA aminoacylation for protein translation [GO:0006418] locus:2014005;,locus:2165001;,locus:2202354;,locus:2166625; AT1G70980,AT5G56680,AT1G68420,AT5G38750 Asparaginyl-tRNA synthetase Os01g0372700 protein (Putative asparagine-tRNA ligase) Q93WM3 Q93WM3_ORYSJ Os01g0372700 Os01g0372700 B1039D07.28 B1045D11.6 OSNPB_010372700 ENOG411DS5K MED25 Q7XYY2 MED25_ARATH Mediator of RNA polymerase II transcription subunit 25 (AtMED25) (Phytochrome and flowering time 1 protein) (Phytochrome and flowering time regulatory protein 1) DISRUPTION PHENOTYPE: Late-flowering phenotype when grown under long-day conditions. Increased drought tolerance and sensitivity to necrotrophic pathogens. Increased resistance to hemibiotrophic fungal pathogen F.oxysporum. {ECO:0000269|PubMed:12815435, ECO:0000269|PubMed:19671879, ECO:0000269|PubMed:21536906}. susceptible to leaf infecting nectrophic pathogens Susceptible to necrotrophic fungi; Resistant to hemibiotrophic fungi in roots-K. Kazan-2009 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Positive regulator of shade avoidance and of jasmonate signaling. Acts in repression of PhyB-mediated light signaling and regulates the expression of FLOWERING LOCUS T (FT) and of CONSTANS (CO). {ECO:0000269|PubMed:12815435, ECO:0000269|PubMed:17560376, ECO:0000269|PubMed:18790998, ECO:0000269|PubMed:19671879, ECO:0000269|PubMed:21536906, ECO:0000269|PubMed:21985558}. MISCELLANEOUS: The affinity between DREB2A and MED25 is reduced when DREB2A is pre-bound to DNA. 89566 Mediator of RNA polymerase II transcription subunit 25 (AtMED25) (Phytochrome and flowering time 1 protein) (Phytochrome and flowering time regulatory protein 1) mediator complex [GO:0016592]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; defense response to fungus [GO:0050832]; flower development [GO:0009908]; jasmonic acid mediated signaling pathway [GO:0009867]; positive regulation of defense response [GO:0031349]; positive regulation of flower development [GO:0009911]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585]; regulation of flower development [GO:0009909]; response to far red light [GO:0010218]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351] locus:2031200; AT1G25540 Mediator complex subunit 25 von Willebrand factor type A Os09g0306700 protein (Putative SMA-9 class B) (cDNA, clone: J100045B11, full insert sequence) Q69KN1 Q69KN1_ORYSJ Os09g0306700 OSJNBa0064I23.27 OSNPB_090306700 ENOG411DS5N A0MFS9 CACLC_ARATH Anoctamin-like protein At1g73020 FUNCTION: May act as a calcium-activated chloride channel. {ECO:0000250}. R-ATH-2672351;R-ATH-6798695; 76805 Anoctamin-like protein At1g73020 chloride channel complex [GO:0034707]; chloride channel activity [GO:0005254] locus:2032763; AT1G73020 chloride channel activity Anoctamin-like protein Os01g0706700 Q0JJZ6 CACLC_ORYSJ Os01g0706700 LOC_Os01g51040 FUNCTION: May act as a calcium-activated chloride channel. {ECO:0000250}. ENOG411DS5Q PPD7 F4J7A7,A0A1I9LQE7 PPD7_ARATH,A0A1I9LQE7_ARATH PsbP domain-containing protein 7, chloroplastic (Photosystem II reaction center PsbP family protein),Photosystem II reaction center PsbP family protein 30524,22175 PsbP domain-containing protein 7, chloroplastic (Photosystem II reaction center PsbP family protein),Photosystem II reaction center PsbP family protein chloroplast [GO:0009507]; extrinsic component of membrane [GO:0019898]; photosystem II oxygen evolving complex [GO:0009654]; calcium ion binding [GO:0005509]; photosynthesis [GO:0015979] locus:2079792; AT3G05410 PsbP Os01g0934400 protein (Fragment),Os01g0934350 protein (Fragment) Q0JGA3,A0A0P0VCP0 Q0JGA3_ORYSJ,A0A0P0VCP0_ORYSJ Os01g0934400 Os01g0934400 OSNPB_010934400,Os01g0934350 OSNPB_010934350 ENOG411DS5S BRP4 Q1PEE4 Q1PEE4_ARATH Cyclin family protein (Transcription factor IIB family protein) R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 39888 Cyclin family protein (Transcription factor IIB family protein) TBP-class protein binding [GO:0017025]; DNA-templated transcriptional preinitiation complex assembly [GO:0070897]; regulation of transcription, DNA-templated [GO:0006355] AT3G57370 transcription initiation factor Transcription initiation factor IIB (General transcription factor TFIIB) Q8W0W3 TF2B_ORYSJ TFIIB Os09g0534800 LOC_Os09g36440 OJ1112_E07.31 P0569E11.1 FUNCTION: General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II. {ECO:0000269|PubMed:11971135}. ENOG411DS5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Targeting protein for Xklp2 (TPX2) Os06g0606800 protein (Putative BRI1-KD interacting protein 118) (cDNA clone:J013067N05, full insert sequence),BRI1-KD interacting protein 118-like (Os06g0606800 protein),Os02g0200800 protein (Putative BRI1-KD interacting protein),Os06g0606800 protein (Fragment) Q69Q42,Q69Q40,Q6Z797,A0A0P0WYR2 Q69Q42_ORYSJ,Q69Q40_ORYSJ,Q6Z797_ORYSJ,A0A0P0WYR2_ORYSJ P0029C06.13-1 Os06g0606800 OSNPB_060606800,P0029C06.13-3 Os06g0606800 OSNPB_060606800,Os02g0200800 OsJ_05791 OSNPB_020200800 P0419A09.11,Os06g0606800 OSNPB_060606800 ENOG411DS5V UMAMIT34 Q9M0B8,A0A1P8B4H5 WTR37_ARATH,A0A1P8B4H5_ARATH WAT1-related protein At4g30420,WAT1-related protein 41276,42451 WAT1-related protein At4g30420,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2118686; AT4G30420 Auxin-induced protein WAT1-related protein,Os09g0426100 protein Q69PB5,Q69PB8,B7F9F1,A0A0P0XLV7,A0A0P0XMG0 Q69PB5_ORYSJ,Q69PB8_ORYSJ,B7F9F1_ORYSJ,A0A0P0XLV7_ORYSJ,A0A0P0XMG0_ORYSJ Os09g0426200 OJ1299_A11.19 OsJ_29431 OSNPB_090426200,Os09g0426000 OJ1299_A11.17 OsJ_29428 OSNPB_090426000,Os09g0426500 OSNPB_090426500,Os09g0426100 OSNPB_090426100 ENOG411DS5X A0A1P8B9B0,Q8GWC5,A0A1P8B9C8,A0A1P8B9B9,A0A1P8B9A6,F4JXI7 A0A1P8B9B0_ARATH,Q8GWC5_ARATH,A0A1P8B9C8_ARATH,A0A1P8B9B9_ARATH,A0A1P8B9A6_ARATH,F4JXI7_ARATH UDP-Glycosyltransferase superfamily protein,At5g65685 (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) ARA:AT5G65685-MONOMER; 43137,52064,55203,57598,56886,50936 UDP-Glycosyltransferase superfamily protein,At5g65685 (Glycosyltransferase) (UDP-Glycosyltransferase superfamily protein) transferase activity [GO:0016740],starch synthase activity [GO:0009011],integral component of membrane [GO:0016021]; transferase activity [GO:0016740] locus:505006717; AT5G65685 starch synthase V Os02g0807100 protein A0A0N7KGA6 A0A0N7KGA6_ORYSJ Os02g0807100 OSNPB_020807100 ENOG411DS5Z SNI1 Q9SWA6 SNI1_ARATH Negative regulator of systemic acquired resistance SNI1 (Non-structural maintenance of chromosome element 5) (Non-SMC element 5) (Protein SUPPRESSOR OF NPR1, INDUCIBLE 1) (Suppressor of npr1-1) DISRUPTION PHENOTYPE: Accumulation of DNA damage leading to constitutively activated DNA damage responses (DDR) (PubMed:24207055). Increased basal expression of pathogenesis-related (PR) genes (e.g. PR1) and hypersensitive response (HR) (PubMed:16766691, PubMed:17369431, PubMed:17360504, PubMed:20935179, PubMed:21149701, PubMed:21320694). Chromatin modifications at the PR-1 promoter that mimic induction (e.g. AcH3 and MeH3K4) (PubMed:16766691). Dwarf plants with distorted leaves, reduced root length, early flowering and reduced fertility (PubMed:16766691, PubMed:17360504, PubMed:21320694). Decreased susceptibility to the beet cyst nematode H.schachtii (PubMed:18321188). Mutant plants display enhanced resistance to the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:22826500). Constitutively elevated levels of somatic homologous recombination (PubMed:17360504). Suppressor of the npr1-1 mutant phenotypes, including systemic acquired resistance (SAR) and normal levels of PR1 restoration (PubMed:10458608, PubMed:20935179). {ECO:0000269|PubMed:10458608, ECO:0000269|PubMed:16766691, ECO:0000269|PubMed:17360504, ECO:0000269|PubMed:17369431, ECO:0000269|PubMed:18321188, ECO:0000269|PubMed:20935179, ECO:0000269|PubMed:21149701, ECO:0000269|PubMed:21320694, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24207055}. Dwarf; Narrow leaves-X. Dong-1999 FUNCTION: Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination (PubMed:24207055). Transcription repressor that prevents expression of pathogenesis-related genes (PR) via histone modifications and binding negative cis-acting elements at their promoters (PubMed:16766691, PubMed:17369431, PubMed:20935179, PubMed:21320694). Negative regulator of hypersensitive response (HR) and systemic acquired resistance (SAR) required to dampen the basal expression of pathogenesis related (PR) genes (PubMed:10458608, PubMed:16766691, PubMed:17360504, PubMed:21149701). Functions synergistically with NTL9/CBNAC as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae (PubMed:22826500). Binds to the PR1 gene promoter to suppress defense response in the absence of pathogen challenge and is removed in response to induction (PubMed:21320694, PubMed:22826500). Regulates negatively both gene expression and DNA recombination during pathogen infection, thus being involved in short-term defense response and a long-term survival strategy (PubMed:17360504). Prevents effective immune responses that involve activation of DNA damage responses, probably by negatively regulating the DNA damage sensors RAD17 and ATR (PubMed:24207055). Negative regulator of defenses against the beet cyst nematode H.schachtii (PubMed:18321188). {ECO:0000269|PubMed:10458608, ECO:0000269|PubMed:16766691, ECO:0000269|PubMed:17360504, ECO:0000269|PubMed:17369431, ECO:0000269|PubMed:18321188, ECO:0000269|PubMed:20935179, ECO:0000269|PubMed:21149701, ECO:0000269|PubMed:21320694, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24207055}. 48812 Negative regulator of systemic acquired resistance SNI1 (Non-structural maintenance of chromosome element 5) (Non-SMC element 5) (Protein SUPPRESSOR OF NPR1, INDUCIBLE 1) (Suppressor of npr1-1) nucleus [GO:0005634]; Smc5-Smc6 complex [GO:0030915]; transcription regulatory region DNA binding [GO:0044212]; cellular response to DNA damage stimulus [GO:0006974]; defense response to nematode [GO:0002215]; DNA repair [GO:0006281]; histone H3 acetylation [GO:0043966]; histone modification [GO:0016570]; negative regulation of defense response [GO:0031348]; negative regulation of histone H3-K4 methylation [GO:0051572]; negative regulation of systemic acquired resistance [GO:0010113]; negative regulation of transcription, DNA-templated [GO:0045892]; plant-type hypersensitive response [GO:0009626]; somatic cell DNA recombination [GO:0016444]; systemic acquired resistance [GO:0009627]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed at low levels in the veins. {ECO:0000269|PubMed:10458608}. locus:2124534; AT4G18470 NA Os02g0312800 protein (Putative negative regulator of systemic acquired resistance) (cDNA clone:001-115-F01, full insert sequence) Q6Z6S7 Q6Z6S7_ORYSJ Os02g0312800 OSNPB_020312800 P0705A04.4 ENOG411DS50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os05g0305900 protein (Fragment),Os05g0305900 protein Q0DJA8,A0A0P0WKH3 Q0DJA8_ORYSJ,A0A0P0WKH3_ORYSJ Os05g0305900 Os05g0305900 OSNPB_050305900,Os05g0305900 OSNPB_050305900 ENOG411DS52 Q9CAG1 Q9CAG1_ARATH Protein kinase superfamily protein (Uncharacterized protein At1g67580; F12B7.13) (Uncharacterized protein F12B7.13) 85251 Protein kinase superfamily protein (Uncharacterized protein At1g67580; F12B7.13) (Uncharacterized protein F12B7.13) cytosol [GO:0005829]; nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; cellular response to salt stress [GO:0071472]; protein phosphorylation [GO:0006468]; regulation of gene expression [GO:0010468]; regulation of long-day photoperiodism, flowering [GO:0048586]; regulation of mitotic cell cycle [GO:0007346] locus:2008595; AT1G67580 Cyclin-dependent kinase Cyclin-dependent kinase G-2 (CDKG;2) (EC 2.7.11.22) (EC 2.7.11.23) Q7XUF4 CDKG2_ORYSJ CDKG-2 Os04g0488000 LOC_Os04g41100 OJ991113_30.14 ENOG411DS53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain RING-type E3 ubiquitin transferase (EC 2.3.2.27) B7F9Y0 B7F9Y0_ORYSJ Os04g0348400 OSNPB_040348400 ENOG411DS59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os01g0600400 protein (Fragment) A0A0P0V4V8 A0A0P0V4V8_ORYSJ Os01g0600400 OSNPB_010600400 ENOG411E8XB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQKA CTPA3 F4J3G5,A0A1I9LQZ2 CTPA3_ARATH,A0A1I9LQZ2_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic (EC 3.4.21.102) (D1 C-terminal processing protease 3) (Photosystem II D1 protein processing peptidase 3),Peptidase S41 family protein FUNCTION: Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation. {ECO:0000250|UniProtKB:O04073}. 3.4.21.102 56205,39585 Carboxyl-terminal-processing peptidase 3, chloroplastic (EC 3.4.21.102) (D1 C-terminal processing protease 3) (Photosystem II D1 protein processing peptidase 3),Peptidase S41 family protein chloroplast thylakoid lumen [GO:0009543]; membrane [GO:0016020]; endopeptidase activity [GO:0004175]; serine-type peptidase activity [GO:0008236],serine-type peptidase activity [GO:0008236] locus:2076626; AT3G57680 peptidase S41 family protein Os06g0318600 protein (Putative protease) Q5ZA08 Q5ZA08_ORYSJ Os06g0318600 Os06g0318600 OSNPB_060318600 P0468A12.32 P0592B08.6 ENOG411DQKF Q8LES0 CSTR5_ARATH CMP-sialic acid transporter 5 (CMP-SA-Tr 5) (CMP-Sia-Tr 5) FUNCTION: Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi. {ECO:0000250}. 34836 CMP-sialic acid transporter 5 (CMP-SA-Tr 5) (CMP-Sia-Tr 5) endoplasmic reticulum [GO:0005783]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; sialic acid transmembrane transporter activity [GO:0015136]; sugar:proton symporter activity [GO:0005351]; UDP-N-acetylgalactosamine transmembrane transporter activity [GO:0005463]; negative regulation of cytokinin dehydrogenase activity [GO:1903857]; negative regulation of ER-associated ubiquitin-dependent protein catabolic process [GO:1903070]; pollen exine formation [GO:0010584]; regulation of shoot apical meristem development [GO:1902183]; sialic acid transport [GO:0015739]; UDP-N-acetylgalactosamine transport [GO:0015789]; UDP-N-acetylglucosamine transmembrane transport [GO:1990569] locus:2177674; AT5G65000 transporter Os02g0573300 protein (cDNA clone:J013044K14, full insert sequence) B7EBM5 B7EBM5_ORYSJ Os02g0573300 OSNPB_020573300 ENOG411DQKS SDR1,SDR2b Q9M2E2,Q9ZUH5,Q94K30,F4JE70,A0A1I9LNT2,A8MQD9 SDR1_ARATH,SDR2B_ARATH,Q94K30_ARATH,F4JE70_ARATH,A0A1I9LNT2_ARATH,A8MQD9_ARATH (+)-neomenthol dehydrogenase (EC 1.1.1.-) (EC 1.1.1.208) (Menthone:neomenthol reductase) (Short-chain dehydrogenase/reductase 1) (AtSDR1),Short-chain dehydrogenase/reductase 2b (AtSDR2b) (EC 1.1.1.-),AT1G01800 protein (NAD(P)-binding Rossmann-fold superfamily protein) (Putative carbonyl reductase),NAD(P)-binding Rossmann-fold superfamily protein FUNCTION: Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons (PubMed:21169366). Involved in basal resistance against pathogens. {ECO:0000269|PubMed:18599651, ECO:0000269|PubMed:21169366}.,FUNCTION: Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons (PubMed:21169366). {ECO:0000269|PubMed:21169366}. ARA:AT3G61220-MONOMER;MetaCyc:AT3G61220-MONOMER;,MetaCyc:AT2G24190-MONOMER;,ARA:AT1G01800-MONOMER; R-ATH-211945;R-ATH-2162123; 1.1.1.208; 1.1.1.-; 1.1.1.208,1.1.1.- 32803,32850,31660,33641,36380,28304 (+)-neomenthol dehydrogenase (EC 1.1.1.-) (EC 1.1.1.208) (Menthone:neomenthol reductase) (Short-chain dehydrogenase/reductase 1) (AtSDR1),Short-chain dehydrogenase/reductase 2b (AtSDR2b) (EC 1.1.1.-),AT1G01800 protein (NAD(P)-binding Rossmann-fold superfamily protein) (Putative carbonyl reductase),NAD(P)-binding Rossmann-fold superfamily protein cytoplasm [GO:0005737]; (+)-neomenthol dehydrogenase activity [GO:0047501]; defense response [GO:0006952],cytosol [GO:0005829]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; oxidation-reduction process [GO:0055114],plant-type cell wall [GO:0009505],cytosol [GO:0005829]; plasma membrane [GO:0005886]; (+)-neomenthol dehydrogenase activity [GO:0047501]; (-)-menthol dehydrogenase activity [GO:0047504]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; defense response [GO:0006952]; oxidation-reduction process [GO:0055114]; response to karrikin [GO:0080167] locus:2047490;,locus:2198230;,locus:2098856; AT3G61220,AT2G24190,AT1G01800 short-chain dehydrogenase reductase OSJNBa0081C01.25 protein (OSJNBb0039L24.6 protein) (Os04g0532400 protein),OSJNBa0081C01.20 protein (OSJNBb0039L24.1 protein) (Os04g0531900 protein) (cDNA clone:J023081M12, full insert sequence),Os04g0531750 protein Q7X7F0,Q7X8W6,A0A0P0WCP5 Q7X7F0_ORYSJ,Q7X8W6_ORYSJ,A0A0P0WCP5_ORYSJ Os04g0532400 OSJNBa0081C01.25 OSJNBb0039L24.6 OSNPB_040532400,Os04g0531900 OsJ_15573 OSJNBa0081C01.20 OSJNBb0039L24.1 OSNPB_040531900,Os04g0531750 OSNPB_040531750 ENOG411DQKU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E1-E2 ATPase NA NA NA NA NA NA NA ENOG411DQK1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0529300 protein (cDNA clone:J013048L17, full insert sequence) B7EBP2 B7EBP2_ORYSJ Os09g0529300 OSNPB_090529300 ENOG411DQK4 Q05758 ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacyl reductoisomerase) PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.; PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4. ARA:AT3G58610-MONOMER; 1.1.1.86 63812 Ketol-acid reductoisomerase, chloroplastic (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacyl reductoisomerase) apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid [GO:0009536]; copper ion binding [GO:0005507]; ketol-acid reductoisomerase activity [GO:0004455]; isoleucine biosynthetic process [GO:0009097]; response to cadmium ion [GO:0046686]; valine biosynthetic process [GO:0009099] locus:2076371; AT3G58610 Ketol-acid reductoisomerase Ketol-acid reductoisomerase, chloroplastic (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacyl reductoisomerase) (Protein KARI),Ketol-acid reductoisomerase (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacyl reductoisomerase),Os10g0446800 protein,Os02g0151600 protein,Os05g0573700 protein (Fragment) Q65XK0,Q5VPB9,A0A0P0XV80,A0A0P0VEU1,A0A0P0WR87 ILV5_ORYSJ,Q5VPB9_ORYSJ,A0A0P0XV80_ORYSJ,A0A0P0VEU1_ORYSJ,A0A0P0WR87_ORYSJ Os05g0573700 LOC_Os05g49800 OJ1735_C10.18,Os01g0652600 OSJNBb0032K15.18 OSNPB_010652600,Os10g0446800 OSNPB_100446800,Os02g0151600 OSNPB_020151600,Os05g0573700 OSNPB_050573700 ENOG411DQK6 MFH8.1,FEY Q66GR1,F4JJR8 Q66GR1_ARATH,F4JJR8_ARATH At5g53090 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein High penetrance of rosette lethality; Stunted leaves; Abnormal leaf position; Flattened, disorganized SAM-J. Medford-1994 FUNCTION: Putative oxidoreductase (By similarity). Required for vegetative shoot apex development, especially during leaf positioning and for shoot apical meristem (SAM) maintenance (PubMed:7849756). {ECO:0000250|UniProtKB:Q5RJY4, ECO:0000269|PubMed:7849756}. ARA:AT5G53090-MONOMER; 41943,41481 At5g53090 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein oxidoreductase activity [GO:0016491],endoplasmic reticulum [GO:0005783]; oxidoreductase activity [GO:0016491]; meristem maintenance [GO:0010073] locus:2163741;,locus:2137772; AT5G53090,AT4G27760 )-oxidoreductase Os02g0116500 protein (Putative forever young oxidoreductase) (cDNA, clone: J090057L11, full insert sequence) Q6ZGM5 Q6ZGM5_ORYSJ Os02g0116500 OJ1442_E05.18 OsJ_05120 OSNPB_020116500 ENOG411DUD9 ndhN Q9LVM2 NDHN_ARATH NAD(P)H-quinone oxidoreductase subunit N, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit N) (NDH subunit N) (NDH-N) (NADH-plastoquinone oxidoreductase subunit N) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:15608332}. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 1.6.5.- 23398 NAD(P)H-quinone oxidoreductase subunit N, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit N) (NDH subunit N) (NDH-N) (NADH-plastoquinone oxidoreductase subunit N) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]; defense response to fungus, incompatible interaction [GO:0009817]; NADH dehydrogenase complex (plastoquinone) assembly [GO:0010258]; transport [GO:0006810] locus:2161263; AT5G58260 NAD(P)H-quinone oxidoreductase subunit N-like Os01g0882500 protein Q0JH55 Q0JH55_ORYSJ Os01g0882500 Os01g0882500 OsJ_04309 OSNPB_010882500 ENOG411DUD8 Q84W96 Q84W96_ARATH Uncharacterized protein At2g28780 (p-hydroxybenzoic acid efflux pump subunit) 87985 Uncharacterized protein At2g28780 (p-hydroxybenzoic acid efflux pump subunit) integral component of membrane [GO:0016021] locus:2053200; AT2G28780 NA Expressed protein (Os11g0100300 protein) (Os12g0100200 protein),Os05g0492300 protein (Fragment) Q2QZ00,A0A0N7KL05 Q2QZ00_ORYSJ,A0A0N7KL05_ORYSJ Os12g0100200 LOC_Os11g01030 LOC_Os12g01020 Os11g0100300 OsJ_32622 OSNPB_110100300 OSNPB_120100200,Os05g0492300 OSNPB_050492300 ENOG411DUD1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os10g0150400 protein (Proline-rich protein) (Proline-rich protein, putative, expressed) (Putative proline-rich protein) (cDNA clone:006-301-G07, full insert sequence) (cDNA clone:006-307-G04, full insert sequence) (cDNA clone:006-310-E01, full insert sequence),Os10g0150600 protein (Proline-rich protein 2) (Proline-rich protein, putative, expressed) (Putative proline-rich protein) (cDNA clone:001-007-C09, full insert sequence) (cDNA clone:006-305-B03, full insert sequence) (cDNA clone:006-309-F02, full insert sequence) (cDNA clone:006-311-G10, full insert sequence) (cDNA clone:J023146D17, full insert sequence),Os10g0150700 protein (Proline-rich protein, putative, expressed) (Putative proline-rich protein) (cDNA clone:006-301-F05, full insert sequence) (cDNA clone:006-307-F12, full insert sequence) (cDNA clone:006-309-H10, full insert sequence) (cDNA clone:006-310-C07, full insert sequence),Os10g0150800 protein (Proline-rich protein, putative, expressed) (Putative proline-rich protein) (cDNA clone:001-107-C07, full insert sequence) (cDNA clone:006-301-E05, full insert sequence) Q7XGS4,Q7GBX3,Q7XGS3,Q7XGS2 Q7XGS4_ORYSJ,Q7GBX3_ORYSJ,Q7XGS3_ORYSJ,Q7XGS2_ORYSJ Os10g0150400 OSJNBa0031A07.12 LOC_Os10g05970 Os10g0150400 OsJ_30742 OSNPB_100150400,OsPRP2 OSJNBa0031A07.13 LOC_Os10g05980 Os10g0150600 OsJ_30743 OSNPB_100150600,OSJNBa0031A07.14 LOC_Os10g05990 Os10g0150700 OsJ_30744 OSNPB_100150700,OSJNBa0031A07.15 LOC_Os10g06000 Os10g0150800 OsJ_30745 OSNPB_100150800 ENOG411DUD0 Q9SJ00,Q9SV97 Q9SJ00_ARATH,Q9SV97_ARATH Uncharacterized protein At2g21990 (Uncharacterized protein At2g21990/F7D8.31),At4g39610 (Uncharacterized protein AT4g39610) (Uncharacterized protein At4g39610/F23K16_240) 27638,29057 Uncharacterized protein At2g21990 (Uncharacterized protein At2g21990/F7D8.31),At4g39610 (Uncharacterized protein AT4g39610) (Uncharacterized protein At4g39610/F23K16_240) locus:2052541;,locus:2122546; AT2G21990,AT4G39610 Protein of unknown function DUF617 NA NA NA NA NA NA NA ENOG411DUD3 NRS/ER Q9LQ04 RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) (EC 5.1.3.13) (dTDP-L-rhamnose synthase) Short root hairs-Y. Zhu-2010 FUNCTION: Bifunctional enzyme involved in dTDP-beta-L-rhamnose biosynthesis. Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-4-keto-alpha-D-glucose to form dTDP-4-keto-beta-L-rhamnose and its reduction to yield dTDP-beta-L-rhamnose. Can form UDP-beta-L-rhamnose from UDP-6-deoxy-4-keto-alpha-D-glucose, but cannot convert GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose. {ECO:0000269|PubMed:15020741}. PATHWAY: Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis. ARA:AT1G63000-MONOMER;MetaCyc:AT1G63000-MONOMER; 1.1.1.133; 1.1.1.133; 5.1.3.13 33597 Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) (EC 5.1.3.13) (dTDP-L-rhamnose synthase) apoplast [GO:0048046]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; dTDP-4-dehydrorhamnose 3,5-epimerase activity [GO:0008830]; dTDP-4-dehydrorhamnose reductase activity [GO:0008831]; UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity [GO:0010489]; UDP-4-keto-rhamnose-4-keto-reductase activity [GO:0010490]; cell wall organization [GO:0071555]; dTDP-rhamnose biosynthetic process [GO:0019305]; UDP-rhamnose biosynthetic process [GO:0010253] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15020741}. locus:2015489; AT1G63000 Rhamnose biosynthetic enzyme Os02g0678400 protein (cDNA clone:J023111H09, full insert sequence) (dTDP-D-glucose 4,6-dehydratase-like) Q6EPQ1 Q6EPQ1_ORYSJ Os02g0678400 OsJ_07924 OSJNBb0005A04.29 OSNPB_020678400 P0663F07.5 ENOG411DUD2 ZDP Q84JE8 ZDP_ARATH Polynucleotide 3'-phosphatase ZDP (EC 3.1.3.32) (DNA nick sensor protein) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:22325353, PubMed:25569774). Loss of 3'-phosphatase activity and hypersensitivity to DNA-damaging agents (PubMed:22325353). Increased DNA methylation and transcriptional gene silencing (PubMed:22325353). Zdp ape1l double mutants are embryo lethal and cause DNA hypermethylation and down-regulation of imprinted genes in the endosperm (PubMed:25569774). {ECO:0000269|PubMed:22325353, ECO:0000269|PubMed:25569774}. FUNCTION: Nick-sensing 3'-phosphoesterase involved in a base excision repair pathway required for active DNA demethylation. The N-terminal DNA-binding domain binds specifically to gap sites and sharply bends the target DNA. Lacks 5'-kinase activity but is capable of 3'-phosphoglycolate end processing. Inactive on 3'-alpha,beta-unsaturated aldehyde (3'-dRP). Protects partially genes from transcriptional silencing by preventing promoter DNA hypermethylation. {ECO:0000269|PubMed:11948185, ECO:0000269|PubMed:22325353}. ARA:AT3G14890-MONOMER; 3.1.3.32;3.1.3.7; 3.1.3.32 77387 Polynucleotide 3'-phosphatase ZDP (EC 3.1.3.32) (DNA nick sensor protein) nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity [GO:0046404]; double-stranded DNA binding [GO:0003690]; nucleotide kinase activity [GO:0019201]; polynucleotide 3'-phosphatase activity [GO:0046403]; zinc ion binding [GO:0008270]; DNA 3' dephosphorylation involved in DNA repair [GO:0098504]; polynucleotide 3' dephosphorylation [GO:0098506]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2086355; AT3G14890 Polynucleotide kinase 3 phosphatase Os01g0737300 protein,Os01g0737401 protein (Fragment) A0A0P0V7Y6,A0A0P0V7Y1 A0A0P0V7Y6_ORYSJ,A0A0P0V7Y1_ORYSJ Os01g0737300 OSNPB_010737300,Os01g0737401 OSNPB_010737401 ENOG411DUD5 NRT2.2,NRT2.4,NRT2.1 Q9LMZ9,Q9FJH8,O82811 NRT22_ARATH,NRT24_ARATH,NRT21_ARATH High-affinity nitrate transporter 2.2 (AtNRT2:2),High affinity nitrate transporter 2.4 (AtNRT2:4),High-affinity nitrate transporter 2.1 (AtNRT2:1) (Protein ACH1) (Protein LATERAL ROOT INITIATION 1) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17085507}.,DISRUPTION PHENOTYPE: Impaired in the high-affinity nitrate transport. Reduced growth on low-nitrate media. Reduced nitrate uptake and increased lateral root initiation. {ECO:0000269|PubMed:11165253, ECO:0000269|PubMed:16157886, ECO:0000269|PubMed:17085507}. Reduced nitrate uptake-F. Daniel-Vedele-2001 FUNCTION: Involved in high-affinity nitrate transport. {ECO:0000269|PubMed:11553754, ECO:0000269|PubMed:15107992, ECO:0000269|PubMed:17085507}.,FUNCTION: Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm. {ECO:0000269|PubMed:15107992}.,FUNCTION: Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NTR3.1. Acts as a repressor of lateral root initiation under high sucrose/low nitrate conditions. {ECO:0000269|PubMed:11553754, ECO:0000269|PubMed:15107992, ECO:0000269|PubMed:16157886, ECO:0000269|PubMed:16415211, ECO:0000269|PubMed:17085507, ECO:0000269|PubMed:19704673}. 56616,57768,57710 High-affinity nitrate transporter 2.2 (AtNRT2:2),High affinity nitrate transporter 2.4 (AtNRT2:4),High-affinity nitrate transporter 2.1 (AtNRT2:1) (Protein ACH1) (Protein LATERAL ROOT INITIATION 1) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; lateral root development [GO:0048527]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706],integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; cellular response to nitrate [GO:0071249]; lateral root development [GO:0048527]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706]; response to nitrate [GO:0010167] TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:10205909, ECO:0000269|PubMed:12668777}.,TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:12668777}.,TISSUE SPECIFICITY: Root cortical and epidermal cells. Not expressed in new lateral root Primordia. Detected in shoots. {ECO:0000269|PubMed:10205909, ECO:0000269|PubMed:16415211, ECO:0000269|PubMed:17540716, ECO:0000269|PubMed:17573350}. locus:2205195;,locus:2159280;,locus:2205190; AT1G08100,AT5G60770,AT1G08090 Nitrate transporter NA NA NA NA NA NA NA ENOG411DUD4 Q9FXE4,A0A1P8ARB0 P2C14_ARATH,A0A1P8ARB0_ARATH Probable protein phosphatase 2C 14 (AtPP2C14) (EC 3.1.3.16) (Protein phosphatase AP2C4),Protein phosphatase 2C family protein 3.1.3.16 49353,45135 Probable protein phosphatase 2C 14 (AtPP2C14) (EC 3.1.3.16) (Protein phosphatase AP2C4),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722] locus:2008545; AT1G67820 PP2C_SIG NA NA NA NA NA NA NA ENOG411DUD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q6AVZ3 Q6AVZ3_ORYSJ Os05g0135500 Os05g0135500 OSNPB_050135500 P0519E07.13 FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. {ECO:0000256|RuleBase:RU362060}. ENOG411DUD6 PDK Q9SBJ1 PDK_ARATH [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial (AtPDHK) (Pyruvate dehydrogenase kinase) (EC 2.7.11.2) DISRUPTION PHENOTYPE: Elevation of the mitochondrial pyruvate dehydrogenase (PDH) complex (mtPDC) activity. Altered vegetative growth with reduced accumulation of vegetative tissues, early flower development and shorter generation time. Increased seed oil content and seed weight at maturity. {ECO:0000269|PubMed:10737148, ECO:0000269|PubMed:12493853}. FUNCTION: Serine protein kinase that inhibits the mitochondrial pyruvate dehydrogenase (PDH) complex (mtPDC) by phosphorylation of the E1 alpha subunit on Ser residues, thus contributing to the regulation of glucose metabolism. {ECO:0000269|PubMed:10631090, ECO:0000269|PubMed:10737148, ECO:0000269|PubMed:10861228, ECO:0000269|PubMed:12493853}. R-ATH-204174;R-ATH-5362517; 2.7.11.2; 2.7.11.2 41447 [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial (AtPDHK) (Pyruvate dehydrogenase kinase) (EC 2.7.11.2) mitochondrion [GO:0005739]; ATP binding [GO:0005524]; histidine phosphotransfer kinase activity [GO:0009927]; protein homodimerization activity [GO:0042803]; pyruvate dehydrogenase (acetyl-transferring) kinase activity [GO:0004740]; protein autophosphorylation [GO:0046777] TISSUE SPECIFICITY: Expressed constitutively and ubiquitously. {ECO:0000269|PubMed:10737148}. locus:2081031; AT3G06483 Pyruvate dehydrogenase ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed (Os03g0370000 protein) (Putative pyruvate dehydrogenase kinase),Os07g0637300 protein (Fragment) Q10KU5,A0A0P0X9C5 Q10KU5_ORYSJ,A0A0P0X9C5_ORYSJ Os03g0370000 LOC_Os03g25400 Os03g0370000 OSJNBa0013M12.5 OSNPB_030370000,Os07g0637300 OSNPB_070637300 ENOG411DUDY ERF060,RAP2-4 O65665,Q8H1E4 ERF60_ARATH,RAP24_ARATH Ethylene-responsive transcription factor ERF060,Ethylene-responsive transcription factor RAP2-4 (Ethylene-responsive transcription factor ERF059) (Protein RELATED TO APETALA2 4) FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 30951,36610 Ethylene-responsive transcription factor ERF060,Ethylene-responsive transcription factor RAP2-4 (Ethylene-responsive transcription factor ERF059) (Protein RELATED TO APETALA2 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to salt stress [GO:0071472]; cytokinin-activated signaling pathway [GO:0009736]; ethylene-activated signaling pathway [GO:0009873]; regulation of cell differentiation [GO:0045595]; response to cold [GO:0009409]; response to light stimulus [GO:0009416]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. locus:2135282;,locus:2029491; AT4G39780,AT1G78080 transcription factor Os02g0752800 protein (Putative dehydration-responsive element binding protein 3) (cDNA clone:001-204-C05, full insert sequence) (cDNA clone:001-205-H01, full insert sequence),Os06g0222400 protein (Fragment) Q6ZGQ0,Q0DDI0 Q6ZGQ0_ORYSJ,Q0DDI0_ORYSJ Os02g0752800 Os02g0752800 OJ1288_G09.10 OSNPB_020752800,Os06g0222400 Os06g0222400 OSNPB_060222400 ENOG411DUDX GLO4,GLO3,HAOX2,HAOX1 Q9LJH5,Q24JJ8,A0A178VMD8,A0A178VHR9,A0A1I9LRL0,A0A1I9LRL2 GLO4_ARATH,GLO3_ARATH,A0A178VMD8_ARATH,A0A178VHR9_ARATH,A0A1I9LRL0_ARATH,A0A1I9LRL2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 (EC 1.1.3.15) (Glycolate oxidase 4) (AtGLO4) (GOX 4) (Short chain alpha-hydroxy acid oxidase GLO4),Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 (EC 1.1.3.15) (Glycolate oxidase 3) (AtGLO3) (GOX 3) (Short chain alpha-hydroxy acid oxidase GLO3),Aldolase-type TIM barrel family protein PATHWAY: Photosynthesis; photorespiration; glycine from 2-phosphoglycolate: step 2/3. ARA:AT3G14130-MONOMER;,ARA:AT3G14150-MONOMER; R-ATH-389661;R-ATH-390918; Biosynthesis of secondary metabolites (01110),Peroxisome (04146),Glyoxylate and dicarboxylate metabolism (00630),Metabolic pathways (01100) 1.1.3.15 39878,40130,30314,28102,34765,27860 Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 (EC 1.1.3.15) (Glycolate oxidase 4) (AtGLO4) (GOX 4) (Short chain alpha-hydroxy acid oxidase GLO4),Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 (EC 1.1.3.15) (Glycolate oxidase 3) (AtGLO3) (GOX 3) (Short chain alpha-hydroxy acid oxidase GLO3),Aldolase-type TIM barrel family protein peroxisome [GO:0005777]; FMN binding [GO:0010181]; long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity [GO:0052853]; medium-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052854]; very-long-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052852]; defense response to bacterium [GO:0042742]; hydrogen peroxide biosynthetic process [GO:0050665]; oxidative photosynthetic carbon pathway [GO:0009854],peroxisome [GO:0005777]; FMN binding [GO:0010181]; long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity [GO:0052853]; medium-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052854]; very-long-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052852]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium [GO:0042742]; hydrogen peroxide biosynthetic process [GO:0050665]; oxidative photosynthetic carbon pathway [GO:0009854],FMN binding [GO:0010181]; oxidoreductase activity [GO:0016491] locus:2087487;,locus:2087517; AT3G14130,AT3G14150 (S)-2-hydroxy-acid oxidase Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 (EC 1.1.3.15) (Glycolate oxidase 4) (GOX 4) (OsGLO4) (Short chain alpha-hydroxy acid oxidase GLO4) Q8H3I4 GLO4_ORYSJ GLO4 Os07g0616500 B1056G08.112 OsJ_25131 FUNCTION: Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation (By similarity). {ECO:0000250}. ENOG411DUDZ CIP111 Q9LET7 CI111_ARATH Calmodulin-interacting protein 111 (CaM-interacting protein 111) (ATPase family AAA domain-containing protein CIP111) 111519 Calmodulin-interacting protein 111 (CaM-interacting protein 111) (ATPase family AAA domain-containing protein CIP111) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; calmodulin binding [GO:0005516] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:11346951}. locus:2103555; AT3G56690 Cell division cycle protein 48 homolog Os11g0220400 protein (Fragment) A0A0P0Y148 A0A0P0Y148_ORYSJ Os11g0220400 OSNPB_110220400 ENOG411DUDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO N-terminal domain Os01g0701900 protein (Putative SEC14 protein) Q5N8J4 Q5N8J4_ORYSJ Os01g0701900 Os01g0701900 OSNPB_010701900 P0047E11.29 P0421H07.5 ENOG411DUDP GALT29A Q9SGD2 GT29A_ARATH Beta-1,6-galactosyltransferase GALT29A (EC 2.4.1.-) (GT29 family galactosyltransferase 1) (AtGALT29A) (Sialyltransferase-like protein GT29A) FUNCTION: Galactosyltransferase involved in the biosynthesis of type II arabinogalactan. Possesses galactosyltransferase (GalT) activity in vitro, transferring galactose from UDP-galactose to a mixture of various oligosaccharides derived from arabinogalactan proteins. Forms a complex with GALT31A that can work cooperatively to enhance the activities of adding galactose residues at O6 positions to beta-1,6-galactan and beta-1,3-galactan. {ECO:0000269|PubMed:24693939}. 2.4.1.- 45935 Beta-1,6-galactosyltransferase GALT29A (EC 2.4.1.-) (GT29 family galactosyltransferase 1) (AtGALT29A) (Sialyltransferase-like protein GT29A) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; sialyltransferase activity [GO:0008373]; oligosaccharide metabolic process [GO:0009311]; protein N-linked glycosylation via asparagine [GO:0018279]; sialylation [GO:0097503] locus:2199993; AT1G08280 sialyltransferase family domain containing protein expressed Sialyltransferase-like protein 1 (OsSTLP1) (EC 2.4.99.-) Q94DD4 STLP1_ORYSJ STLP1 Os01g0858900 LOC_Os01g63970 OsJ_04139 P0489B03.1 P0683F02.29 FUNCTION: Possesses sialyltransferase-like activity in vitro. Transfers sialic acid to the oligosaccharide Gal-beta-1,3-GalNAc and to glycoproteins such as asialofetuin, alpha-1-acid glycoprotein (NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc-) and andasialo-alpha-1-acid glycoprotein. The transferred sialic acid is linked to galactose of Gal-beta-1,3-GalNAc through alpha-2,6-linkage. {ECO:0000269|PubMed:16452316}. ENOG411DUDS SBT1.2 O64495 SBT12_ARATH Subtilisin-like protease SBT1.2 (EC 3.4.21.-) (Cucumisin-like serine protease SDD1) (Protein STOMATAL DENSITY AND DISTRIBUTION 1) (Subtilase subfamily 1 member 2) (AtSBT1.2) (Subtilisin-like protease SDD1) DISRUPTION PHENOTYPE: Increased stomatal density and formation of clustered stomata by enhanced stomatal development initiation and extension of stomatal cell lineages. No major impact on photosynthesis, except 30% higher CO2 assimilation rates in low-light-adapted plants exposed to high light intensities. {ECO:0000269|PubMed:10809670, ECO:0000269|PubMed:12554730}. Increased stomatal density-T. Altmann-2000 FUNCTION: Serine protease involved in the negative regulation of stomatal density and distribution. Not active on EPFL6 (AC Q1PEY6) (PubMed:20056678). Positive regulator of water use efficiency (WUE). {ECO:0000269|PubMed:10809670, ECO:0000269|PubMed:12119372, ECO:0000269|PubMed:20056678, ECO:0000269|PubMed:21169508}. ARA:AT1G04110-MONOMER; 3.4.21.- 83776 Subtilisin-like protease SBT1.2 (EC 3.4.21.-) (Cucumisin-like serine protease SDD1) (Protein STOMATAL DENSITY AND DISTRIBUTION 1) (Subtilase subfamily 1 member 2) (AtSBT1.2) (Subtilisin-like protease SDD1) apoplast [GO:0048046]; external side of plasma membrane [GO:0009897]; serine-type endopeptidase activity [GO:0004252]; regulation of cell proliferation [GO:0042127]; stomatal complex morphogenesis [GO:0010103] TISSUE SPECIFICITY: Mostly expressed in leaves and cotyledons (especially in epidermal cells), and, to a lower extent, in floral buds, stems, and siliques. Strongly expressed in stomatal precursor cells (meristemoids and guard mother cells). {ECO:0000269|PubMed:10809670, ECO:0000269|PubMed:12119372}. locus:2020245; AT1G04110 subtilisin-like protease SDD1-like Os03g0143100 protein (Subtilase family protein, putative) Q10RX3 Q10RX3_ORYSJ Os03g0143100 LOC_Os03g04950 OSNPB_030143100 ENOG411DUDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class Os12g0416900 protein (Fragment),Os10g0195175 protein (Fragment),Os08g0215300 protein,Os09g0282400 protein Q0INP3,A0A0P0XSI8,A0A0P0XD71,A0A0P0XJG5 Q0INP3_ORYSJ,A0A0P0XSI8_ORYSJ,A0A0P0XD71_ORYSJ,A0A0P0XJG5_ORYSJ Os12g0416900 Os12g0416900 OSNPB_120416900,Os10g0195175 OSNPB_100195175,Os08g0215300 OSNPB_080215300,Os09g0282400 OSNPB_090282400 ENOG411DUDU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Zinc finger protein Os02g0775600 protein (Putative zinc finger protein) (cDNA clone:001-017-G09, full insert sequence) (cDNA clone:J013165P15, full insert sequence) Q6YZ50 Q6YZ50_ORYSJ Os02g0775600 Os02g0775600 OJ1448_G06.27 OsJ_08574 OSJNBb0013K01.8 OSNPB_020775600 ENOG411DUDT EMB175 Q9FFN1 PP363_ARATH Pentatricopeptide repeat-containing protein At5g03800 (Protein EMBRYO DEFECTIVE 175) Embryo defective; Globular-D. Meinke-2002 FUNCTION: May play a role in embryogenesis. {ECO:0000269|PubMed:15647901}. 101155 Pentatricopeptide repeat-containing protein At5g03800 (Protein EMBRYO DEFECTIVE 175) intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451] locus:2150690; AT5G03800 Pentatricopeptide repeat-containing protein Os07g0172600 protein (Selenium-binding protein-like) Q6ZA49 Q6ZA49_ORYSJ Os07g0172600 OSNPB_070172600 P0496D04.30 ENOG411DUDW DTX54 Q9LE20 DTX54_ARATH Protein DETOXIFICATION 54 (AtDTX54) (Multidrug and toxic compound extrusion protein 54) (MATE protein 54) (Protein NOVEL ION CARRIER 2) (Protein NIC2) FUNCTION: May function as a multidrug and toxin extrusion transporter in the export of IAA-conjugates from the cytoplasm into peroxisomes. {ECO:0000269|Ref.6}. R-ATH-425366; 54793 Protein DETOXIFICATION 54 (AtDTX54) (Multidrug and toxic compound extrusion protein 54) (MATE protein 54) (Protein NOVEL ION CARRIER 2) (Protein NIC2) integral component of membrane [GO:0016021]; peroxisomal membrane [GO:0005778]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855] TISSUE SPECIFICITY: Expressed in the vascular tissue of all organs. {ECO:0000269|Ref.6}. locus:2013006; AT1G71870 Mate efflux family protein Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q851N6 Q851N6_ORYSJ OSJNBa0042I09.8 Os03g0839200 LOC_Os03g62270 OSNPB_030839200 ENOG411DUDV PUB14 Q8VZ40 PUB14_ARATH U-box domain-containing protein 14 (EC 2.3.2.27) (E3 ubiquitin-protein ligase PUB14) (Plant U-box protein 14) (Prototypical U-box domain protein 14) (RING-type E3 ubiquitin transferase PUB14) FUNCTION: Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. {ECO:0000269|PubMed:15231834}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 69397 U-box domain-containing protein 14 (EC 2.3.2.27) (E3 ubiquitin-protein ligase PUB14) (Plant U-box protein 14) (Prototypical U-box domain protein 14) (RING-type E3 ubiquitin transferase PUB14) cytoplasm [GO:0005737]; nucleus [GO:0005634]; transmembrane receptor protein serine/threonine kinase binding [GO:0070696]; ubiquitin-protein transferase activity [GO:0004842] TISSUE SPECIFICITY: Expressed in flowers, green siliques, seeds and rosette leaves. {ECO:0000269|PubMed:15231834}. locus:2082682; AT3G54850 U-box domain-containing protein NA NA NA NA NA NA NA ENOG411DUDI POT5 Q9M7K4 POT5_ARATH Potassium transporter 5 (AtHAK1) (AtHAK5) (AtPOT5) Reduced fresh weight under limited potassium and elevated salt-F. Rubio-2010 FUNCTION: High-affinity potassium transporter. Can also transport rubidium and cesium (Ref.1). Is essential with AKT1 for high-affinity potassium uptake in roots during seedling establishment and postgermination growth under low potassium conditions (PubMed:20413648). Mediates potassium uptake by plant roots in response to low potassium conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Positively regulated by the calcium sensors calcineurin B-like genes CBL1, CBL8, CBL9 and CBL10, and by phosphorylation by CIPK23 (PubMed:26474642). {ECO:0000269|PubMed:20413648, ECO:0000269|PubMed:26474642, ECO:0000269|Ref.1}. 87853 Potassium transporter 5 (AtHAK1) (AtHAK5) (AtPOT5) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079]; potassium:sodium symporter activity [GO:0009674]; potassium ion import [GO:0010107] TISSUE SPECIFICITY: Predominantly expressed in the roots. locus:2142110; AT4G13420 Potassium transporter Potassium transporter 5 (OsHAK5) Q5JK32 HAK5_ORYSJ HAK5 Os01g0930400 LOC_Os01g70490 OsJ_04644 OSJNBa0052O12.31 P0506E04.9 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411DUDH MAH20.12 Q9FNN2 Q9FNN2_ARATH Transducin family protein / WD-40 repeat family protein (WD-repeat protein-like) FUNCTION: Acts as a component involved in the crosstalk regulation between light, hormone and abiotic stress response. {ECO:0000269|PubMed:26706055}. 65830 Transducin family protein / WD-40 repeat family protein (WD-repeat protein-like) response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; response to light stimulus [GO:0009416]; response to osmotic stress [GO:0006970] locus:2159562; AT5G08560 WD repeat-containing protein Os02g0294600 protein (Putative WD repeat protein) Q6K5C8 Q6K5C8_ORYSJ OSJNBa0073G17.1 Os02g0294600 OSNPB_020294600 ENOG411DUDK Q8W4C4,A0A1P8B6X1,A0A1P8B6W7 Q8W4C4_ARATH,A0A1P8B6X1_ARATH,A0A1P8B6W7_ARATH Beta-carotene isomerase D27 28637,25254,21501 Beta-carotene isomerase D27 isomerase activity [GO:0016853] locus:504955232; AT4G01995 NA Os05g0131100 protein (cDNA clone:J013130C19, full insert sequence),Os05g0131401 protein Q65XT7,A0A0P0WHI4 Q65XT7_ORYSJ,A0A0P0WHI4_ORYSJ Os05g0131100 OSNPB_050131100 P0033D06.11,Os05g0131401 OSNPB_050131401 ENOG411DUDJ MSN9.18,MSN9.190 Q9FL05,F4KHB6,A0A1P8BBF4 Q9FL05_ARATH,F4KHB6_ARATH,A0A1P8BBF4_ARATH AT5g40270/MSN9_170 (HD domain-containing metal-dependent phosphohydrolase family protein) (Similarity to intracellular protein),HD domain-containing metal-dependent phosphohydrolase family protein R-ATH-8956319; 54674,51861,45778 AT5g40270/MSN9_170 (HD domain-containing metal-dependent phosphohydrolase family protein) (Similarity to intracellular protein),HD domain-containing metal-dependent phosphohydrolase family protein nucleus [GO:0005634]; dGTPase activity [GO:0008832]; dGTP catabolic process [GO:0006203],hydrolase activity [GO:0016787] locus:2173797;,locus:2173807; AT5G40270,AT5G40290 Protein SAMHD1 homolog Os01g0109300 protein A0A0P0UXJ0 A0A0P0UXJ0_ORYSJ Os01g0109300 OSNPB_010109300 ENOG411DUDM Q9SU27 Q9SU27_ARATH ER membrane protein complex subunit 3 27915 ER membrane protein complex subunit 3 endoplasmic reticulum [GO:0005783]; ER membrane protein complex [GO:0072546]; mitochondrion [GO:0005739]; protein folding in endoplasmic reticulum [GO:0034975] locus:2135645; AT4G12590 transmembrane protein 111-like ER membrane protein complex subunit 3,Os09g0497400 protein Q0J0J5,A0A0P0XQ17 Q0J0J5_ORYSJ,A0A0P0XQ17_ORYSJ Os09g0497400 Os09g0497400 OsJ_29882 OSNPB_090497400,Os09g0497400 OSNPB_090497400 ENOG411DUDN MSG15.11 Q9FJ89,F4KER9 Q9FJ89_ARATH,F4KER9_ARATH TraB family protein 44312,28173 TraB family protein locus:2173073; AT5G52030 TraB family Os08g0545700 protein (Fragment) A0A0P0XIZ8 A0A0P0XIZ8_ORYSJ Os08g0545700 OSNPB_080545700 ENOG411DUDA MSI5,MSI4,NFC5 Q9SU78,O22607,A0A1P8B6T2 MSI5_ARATH,MSI4_ARATH,A0A1P8B6T2_ARATH WD-40 repeat-containing protein MSI5,WD-40 repeat-containing protein MSI4 (Altered cold-responsive gene 1 protein),Nucleosome/chromatin assembly factor group C5 Significant though not complete reduction in flowering.,Intermediate delay in flowering time compared to both single mutants. Late flowering-J. Martinez-Zapater-2004 FUNCTION: Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. {ECO:0000250}.,FUNCTION: Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of the flowering autonomous pathway which positively regulates flowering by promoting transcriptional repression of the flowering repressor FLC. May promote histone deacetylation at the FLC locus leading to the formation of repressive chromatin structures. Also negatively regulates cold-responsive genes. {ECO:0000269|PubMed:12548286, ECO:0000269|PubMed:14593187, ECO:0000269|PubMed:14745447, ECO:0000269|PubMed:14745450}. MISCELLANEOUS: Binds zinc. 53995,55759,49480 WD-40 repeat-containing protein MSI5,WD-40 repeat-containing protein MSI4 (Altered cold-responsive gene 1 protein),Nucleosome/chromatin assembly factor group C5 Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; covalent chromatin modification [GO:0016569]; negative regulation of gene expression [GO:0010629]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; cell differentiation [GO:0030154]; covalent chromatin modification [GO:0016569]; DNA repair [GO:0006281]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves, main stems and developing fruits. Expressed at higher levels in roots and flowers. {ECO:0000269|PubMed:14745447}. locus:2134408;,locus:2050372; AT4G29730,AT2G19520 WD-40 repeat-containing protein Os01g0710000 protein (Putative OsFVE) (Putative Y1 protein) (cDNA clone:J023104J19, full insert sequence) Q5NAI9 Q5NAI9_ORYSJ Os01g0710000 Os01g0710000 OSNPB_010710000 P0456F08.15 ENOG411DUDC Q56Y19 Q56Y19_ARATH Phosphoribosylformylglycinamidine synthase (Uncharacterized protein At2g43240) 48651 Phosphoribosylformylglycinamidine synthase (Uncharacterized protein At2g43240) integral component of membrane [GO:0016021] locus:4010713705; AT2G43235 NA Os05g0299200 protein A0A0N7KKH3 A0A0N7KKH3_ORYSJ Os05g0299200 OSNPB_050299200 ENOG411DUDB TAP46 Q8LDQ4 TAP46_ARATH PP2A regulatory subunit TAP46 (2A phosphatase-associated protein of 46 kDa) DISRUPTION PHENOTYPE: RNAi plants show the formation of spontaneous disease-like nectrotic lesions leading to premature cell death. The defective plants also display a strong reduction in protein synthesis, the induction of autophagy and nitrogen mobilization. {ECO:0000269|PubMed:21216945}. FUNCTION: Involved in the positive regulation of the TOR signaling pathway (PubMed:21216945, PubMed:25399018). Acts as a negative regulator of PP2A catalytic activity (PubMed:10517853, PubMed:21216945, PubMed:24357600). Plays a positive role in the ABA-regulated inhibition of germination, probably throught its interaction with ABI5 (PubMed:24357600). {ECO:0000269|PubMed:10517853, ECO:0000269|PubMed:21216945, ECO:0000269|PubMed:24357600, ECO:0000269|PubMed:25399018}. MISCELLANEOUS: Plants over-expressing TAP46 exhibit an increased abscisic acid (ABA) sensitivity in seed germination and a reduced PP2A activity (PubMed:24357600). Over-expression of TAP46 also leads to the stimulation of the overall plant growth and the increased nitrogen-assimilating activities (PubMed:25399018). {ECO:0000269|PubMed:24357600, ECO:0000269|PubMed:25399018}. 45663 PP2A regulatory subunit TAP46 (2A phosphatase-associated protein of 46 kDa) cytosol [GO:0005829]; kinase binding [GO:0019900]; protein phosphatase 2A binding [GO:0051721]; protein phosphatase binding [GO:0019903]; protein phosphatase regulator activity [GO:0019888]; negative regulation of seed germination [GO:0010187]; positive regulation of cell growth [GO:0030307]; positive regulation of TOR signaling [GO:0032008]; regulation of dephosphorylation [GO:0035303]; regulation of nitrogen utilization [GO:0006808]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; TOR signaling [GO:0031929] DEVELOPMENTAL STAGE: Highly expressed during seed maturation. {ECO:0000269|PubMed:24357600}. TISSUE SPECIFICITY: Ubiquitous (PubMed:10517853). Highly expressed in seed, and particularly in the embryo (PubMed:24357600). {ECO:0000269|PubMed:10517853, ECO:0000269|PubMed:24357600}. locus:2168392; AT5G53000 PP2A regulatory subunit PP2A regulatory subunit TAP46,Os11g0141000 protein (Fragment),Os11g0141000 protein (TAP42-like family protein, expressed) Q2QY04,Q0IUQ6,Q2RAR3 TAP46_ORYSJ,Q0IUQ6_ORYSJ,Q2RAR3_ORYSJ TAP46 LOC_Os12g04290 Os12g0137500 OsJ_35163,Os11g0141000 OSNPB_110141000,Os11g0141000 LOC_Os11g04520 OsJ_32912 OSNPB_110141000 FUNCTION: Involved in the regulation of the TOR signaling pathway. Seems to act as a regulator of PP2A catalytic activity. {ECO:0000250|UniProtKB:D2K8N5}. ENOG411DUDE OST1A,OST1B Q9SFX3,Q9ZUA0,A0A1P8AUN1 OST1A_ARATH,OST1B_ARATH,A0A1P8AUN1_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A (EC 2.4.99.18) (Ribophorin IA) (RPN-IA) (Ribophorin-1A),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B (EC 2.4.99.18) (Ribophorin IB) (RPN-IB) (Ribophorin-1B),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (EC 2.4.99.18) FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000250}.,FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000256|RuleBase:RU361143}. PATHWAY: Protein modification; protein glycosylation.,PATHWAY: Protein modification; protein glycosylation. {ECO:0000256|RuleBase:RU361143}. ARA:AT1G76400-MONOMER;,ARA:AT2G01720-MONOMER; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 2.4.99.18 68642,52219,62328 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A (EC 2.4.99.18) (Ribophorin IA) (RPN-IA) (Ribophorin-1A),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B (EC 2.4.99.18) (Ribophorin IB) (RPN-IB) (Ribophorin-1B),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (EC 2.4.99.18) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; oligosaccharyltransferase complex [GO:0008250]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; protein N-linked glycosylation via asparagine [GO:0018279],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; oligosaccharyltransferase complex [GO:0008250]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; protein N-linked glycosylation via asparagine [GO:0018279],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; protein glycosylation [GO:0006486] locus:2014579;,locus:2065378; AT1G76400,AT2G01720 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A (EC 2.4.99.18) (Ribophorin IA) (RPN-IA) (Ribophorin-1A),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B (EC 2.4.99.18) (Ribophorin IB) (RPN-IB) (Ribophorin-1B),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (EC 2.4.99.18) (Fragment),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (EC 2.4.99.18) Q0DJC5,B9FDT1,A0A0P0WGR7,A0A0P0WKA3,A0A0P0WKC1,A0A0P0WGP2 OST1A_ORYSJ,OST1B_ORYSJ,A0A0P0WGR7_ORYSJ,A0A0P0WKA3_ORYSJ,A0A0P0WKC1_ORYSJ,A0A0P0WGP2_ORYSJ OST1A RPN1A Os05g0301500 LOC_Os05g23600 OsJ_17960,OST1B RPN1B Os04g0693000 OsJ_16761,Os04g0693000 OSNPB_040693000,Os05g0301500 OSNPB_050301500 FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000250}.,FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000256|RuleBase:RU361143}. ENOG411DUDD Q9FMF6 PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial 81958 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial translation [GO:0032543]; RNA modification [GO:0009451] locus:2173403; AT5G64320 Pentatricopeptide repeat-containing protein Os10g0368902 protein A0A0P0XUD1 A0A0P0XUD1_ORYSJ Os10g0368902 OSNPB_100368902 ENOG411DUDG EMB3004 Q9SQT8 DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic (DHQ-SDH protein) (DHQase-SORase) (Protein EMBRYO DEFECTIVE 3004) [Includes: Dehydroquinate dehydratase (DHQ) (EC 4.2.1.10); Shikimate dehydrogenase (SDH) (EC 1.1.1.25)] Embryo defective; Cotyledon-D. Meinke-2004 PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.; PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7. ARA:AT3G06350-MONOMER;MetaCyc:AT3G06350-MONOMER; 4.2.1.10; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 4.2.1.10; 1.1.1.25 65796 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic (DHQ-SDH protein) (DHQase-SORase) (Protein EMBRYO DEFECTIVE 3004) [Includes: Dehydroquinate dehydratase (DHQ) (EC 4.2.1.10); Shikimate dehydrogenase (SDH) (EC 1.1.1.25)] chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 3-dehydroquinate dehydratase activity [GO:0003855]; NADP binding [GO:0050661]; shikimate 3-dehydrogenase (NADP+) activity [GO:0004764]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]; embryo development ending in seed dormancy [GO:0009793]; shikimate metabolic process [GO:0019632] locus:2081036; AT3G06350 3-dehydroquinate dehydratase shikimate dehydrogenase Os01g0375200 protein (Putative dehydroquinate dehydratase),Os12g0534000 protein (Fragment),Os01g0375500 protein,Os01g0375350 protein,Os01g0375200 protein (Fragment) Q5ZCV1,Q0IMW8,A0A0P0V319,A0A0P0V2P3,A0A0P0V2K1 Q5ZCV1_ORYSJ,Q0IMW8_ORYSJ,A0A0P0V319_ORYSJ,A0A0P0V2P3_ORYSJ,A0A0P0V2K1_ORYSJ Os01g0375200 B1111C09.6 OsJ_01832 OSNPB_010375200,Os12g0534000 Os12g0534000 OSNPB_120534000,Os01g0375500 OSNPB_010375500,Os01g0375350 OSNPB_010375350,Os01g0375200 OSNPB_010375200 ENOG411DUDF PNC2,PNC1 Q8VZS0,Q9MA90 PNC2_ARATH,PNC1_ARATH Peroxisomal adenine nucleotide carrier 2,Peroxisomal adenine nucleotide carrier 1 (AtPNC1) FUNCTION: Peroxisomal adenine nucleotide transporter catalyzing the counterexchange of ATP with AMP. ATP is needed by reactions that generate acyl-CoA for peroxisomal fatty acid beta-oxidation during postgerminative growth. Required for the beta-oxidation reactions involved in auxin biosynthesis and for the conversion of seed-reserved triacylglycerols into sucrose that is necessary for growth before the onset of photosynthesis. {ECO:0000269|PubMed:19073762, ECO:0000269|PubMed:19073763}. R-ATH-389599; 35159,35551 Peroxisomal adenine nucleotide carrier 2,Peroxisomal adenine nucleotide carrier 1 (AtPNC1) integral component of peroxisomal membrane [GO:0005779]; mitochondrial inner membrane [GO:0005743]; peroxisome [GO:0005777]; ADP transmembrane transporter activity [GO:0015217]; antiporter activity [GO:0015297]; ATP transmembrane transporter activity [GO:0005347]; ADP transport [GO:0015866]; ATP transport [GO:0015867]; fatty acid beta-oxidation [GO:0006635]; indolebutyric acid metabolic process [GO:0080024]; mitochondrial transport [GO:0006839],integral component of peroxisomal membrane [GO:0005779]; mitochondrial inner membrane [GO:0005743]; peroxisome [GO:0005777]; ADP transmembrane transporter activity [GO:0015217]; antiporter activity [GO:0015297]; ATP transmembrane transporter activity [GO:0005347]; ADP transport [GO:0015866]; ATP transport [GO:0015867]; fatty acid beta-oxidation [GO:0006635]; indolebutyric acid metabolic process [GO:0080024]; mitochondrial transport [GO:0006839]; seedling development [GO:0090351] DEVELOPMENTAL STAGE: Expressed in the early seedling stage of post-germinative growth. {ECO:0000269|PubMed:19073762}. TISSUE SPECIFICITY: Expressed in stamens, pollen grains, seeds, leaves, cotyledons, roots, stems, flowers, hypocotyls and siliques. {ECO:0000269|PubMed:19073763}. locus:2146355;,locus:2096344; AT5G27520,AT3G05290 peroxisomal adenine nucleotide carrier Os05g0392700 protein (cDNA clone:001-019-F07, full insert sequence) (cDNA clone:006-203-E01, full insert sequence) (cDNA clone:J033044H10, full insert sequence) Q60ER7 Q60ER7_ORYSJ Os05g0392700 Os05g0392700 OJ1764_D01.15 OsJ_18435 OSNPB_050392700 ENOG411EB4J F4HR91 F4HR91_ARATH Leucine-rich repeat (LRR) family protein 52666 Leucine-rich repeat (LRR) family protein locus:2197581; AT1G33610 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EB4M O82484,P60839,F4IC69,A0A1P8B4B5 DRL23_ARATH,DRL2_ARATH,F4IC69_ARATH,A0A1P8B4B5_ARATH Putative disease resistance protein At4g10780,Probable disease resistance protein At1g12290,Disease resistance protein (CC-NBS-LRR class) family,LRR and NB-ARC domains-containing disease resistance protein FUNCTION: Potential disease resistance protein. {ECO:0000250}.,FUNCTION: Probable disease resistance protein. {ECO:0000250}. 101802,100503,95743,101453 Putative disease resistance protein At4g10780,Probable disease resistance protein At1g12290,Disease resistance protein (CC-NBS-LRR class) family,LRR and NB-ARC domains-containing disease resistance protein plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952] locus:2132741;,locus:2034765; AT4G10780,AT1G12290 NB-ARC domain NA NA NA NA NA NA NA ENOG411EB4G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411ED8H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ED8B Q1PFZ3,F4HXK1 Q1PFZ3_ARATH,F4HXK1_ARATH Transmembrane protein 31829,31867 Transmembrane protein integral component of membrane [GO:0016021] locus:2196105;,locus:6530298127; AT1G02570,AT1G02575 NA NA NA NA NA NA NA NA ENOG411EBMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411EBMQ Q9M2R9 GDL58_ARATH GDSL esterase/lipase At3g50400 (EC 3.1.1.-) (Extracellular lipase At3g50400) ARA:AT3G50400-MONOMER; 3.1.1.- 41498 GDSL esterase/lipase At3g50400 (EC 3.1.1.-) (Extracellular lipase At3g50400) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042] locus:2074840; AT3G50400 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411EBMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411EBMT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: kinase interacting family protein Os12g0605100 protein (Fragment),Os03g0637900 protein,Os03g0638000 protein (Fragment) Q0IM25,Q0DQ47,Q0DQ46 Q0IM25_ORYSJ,Q0DQ47_ORYSJ,Q0DQ46_ORYSJ Os12g0605100 Os12g0605100 OSNPB_120605100,Os03g0637900 Os03g0637900 OSNPB_030637900,Os03g0638000 Os03g0638000 OSNPB_030638000 ENOG411EBMU CYP72C1 Q9SHG5 C72C1_ARATH Cytochrome P450 72C1 (EC 1.14.-.-) (Protein CHIBI 2) (Protein DWARFISH WITH LOW FERTILITY) (Protein SHRINK 1) (Protein SUPPRESSOR OF PHYB-4 PROTEIN 7) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but increased length of dark-grown hypocotyls, reduced responsiveness of hypocotyls to light and increased responsiveness to brassinolide. {ECO:0000269|PubMed:15773850, ECO:0000269|PubMed:15773851, ECO:0000269|PubMed:20396969}. Dwarf plants with short hypocotyls in light and dark. Plants have dark green leaves with rounded blades short stems and internodesreduced apical dominance and delayed senscence. Seeds are smaller (shorter) that non- mutant siblings. Mutants have reduced levels of endogenuos brassinosteroids.,Double mutant of BAS1 and SOB both of which are null alleles. Less responsive to light as measured by hypocotyl elongation and enhanced cotyledon expansion in red blue and far red light meaning they are less responsive. Early flowering. Increased levels of 6-deoxotyphasterol and cataseterone which are products of the brassiolide pathway. FUNCTION: Atypical cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis. Does not possess carbon 26 hydroxylase activity and may inactivate BRs by hydroxylation of carbons other than C-26. Acts in association with CYP734A1 to inactivate BRs and modulate photomorphogenesis. {ECO:0000269|PubMed:15689343, ECO:0000269|PubMed:15773850, ECO:0000269|PubMed:15773851, ECO:0000269|PubMed:20396969, ECO:0000269|PubMed:20669042}. MISCELLANEOUS: The gain-of-function mutant shk1-D (T-DNA tagging) shows a severe dwarf phenotype and an important reduction of the levels of the BRs castasterone, 6-deoxocastasterone and 6-deoxotyphasterol. The gain-of-function mutant chi2 show reduced length of hypocotyls grown in red, far-red and blue lights or darkeness. The gain of function mutant dlf1-D shows severe dwarf phenotype with low fertility. ARA:AT1G17060-MONOMER; 1.14.-.- 59594 Cytochrome P450 72C1 (EC 1.14.-.-) (Protein CHIBI 2) (Protein DWARFISH WITH LOW FERTILITY) (Protein SHRINK 1) (Protein SUPPRESSOR OF PHYB-4 PROTEIN 7) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in hypocotyls, roots, cotyledons, stamens and silique junctions. {ECO:0000269|PubMed:15773850, ECO:0000269|PubMed:15773851}. AT1G17060 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411EBMZ P4H8 F4JNU8 P4H8_ARATH Probable prolyl 4-hydroxylase 8 (AtP4H8) (EC 1.14.11.2) FUNCTION: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. {ECO:0000250|UniProtKB:Q9ZW86}. 1.14.11.2 32915 Probable prolyl 4-hydroxylase 8 (AtP4H8) (EC 1.14.11.2) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656] locus:2125329; AT4G35810 oxidoreductase 2OG-Fe(II) oxygenase family protein NA NA NA NA NA NA NA ENOG411EBMY Q9C9Z0,A0A1I9LTN1,A0A1I9LTN2 Y3866_ARATH,A0A1I9LTN1_ARATH,A0A1I9LTN2_ARATH Putative BTB/POZ domain-containing protein At3g08660,Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 65733,48309,59415 Putative BTB/POZ domain-containing protein At3g08660,Phototropic-responsive NPH3 family protein protein ubiquitination [GO:0016567] locus:2077868; AT3G08660 NPH3 family NA NA NA NA NA NA NA ENOG411EDS6 HHL1 Q8LDL0,F4HTQ1 HHL1_ARATH,MPRO1_ARATH Protein HHL1, chloroplastic (Hypersensitive to high light 1),Probable thimet oligopeptidase (EC 3.4.24.15) (Zincin-like metalloproteases-like protein 1) DISRUPTION PHENOTYPE: No visible phenotype, when grown under normal light conditions. Partial loss of PSII capacity after high-light stress. {ECO:0000269|PubMed:24632535}. FUNCTION: Involved in photoprotection. Forms a complex with LQY1 that is involved in the repair and reassembly cycle of the PSII-LHCII supercomplex under high-light conditions. May function in guiding the release of psbC from PSII core monomers. {ECO:0000269|PubMed:24632535}.,FUNCTION: Involved in cytoplasmic peptide degradation. {ECO:0000250}. R-ATH-983168; 3.4.24.15 26081,80291 Protein HHL1, chloroplastic (Hypersensitive to high light 1),Probable thimet oligopeptidase (EC 3.4.24.15) (Zincin-like metalloproteases-like protein 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; metalloendopeptidase activity [GO:0004222]; peptide metabolic process [GO:0006518],cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; peptide metabolic process [GO:0006518] locus:2008615;,locus:2008600; AT1G67700,AT1G67690 Peptidase family M3 NA NA NA NA NA NA NA ENOG411EDS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Polycomb group ring finger NA NA NA NA NA NA NA ENOG411EDS2 Q58FZ9,F4ITS3,A0A1P8B2J7 Q58FZ9_ARATH,F4ITS3_ARATH,A0A1P8B2J7_ARATH Cell differentiation, Rcd1-like protein 36822,26107,32681 Cell differentiation, Rcd1-like protein CCR4-NOT core complex [GO:0030015]; P-body [GO:0000932]; negative regulation of translation [GO:0017148]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288],CCR4-NOT complex [GO:0030014]; mRNA catabolic process [GO:0006402],CCR4-NOT complex [GO:0030014]; integral component of membrane [GO:0016021]; mRNA catabolic process [GO:0006402] locus:2060221; AT2G32550 Cell differentiation family Rcd1-like NA NA NA NA NA NA NA ENOG411EDS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sucrose-6F-phosphate phosphohydrolase NA NA NA NA NA NA NA ENOG411EDS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EDS1 Q9SL28 Q9SL28_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g28270) 28016 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g28270) cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2062804; AT2G28270 C1 domain NA NA NA NA NA NA NA ENOG411EDSF CYP71B16,CYP71B17 Q9LTM7,Q9LTM6 C71BG_ARATH,C71BH_ARATH Cytochrome P450 71B16 (EC 1.14.-.-),Cytochrome P450 71B17 (EC 1.14.-.-) ARA:AT3G26150-MONOMER;,ARA:AT3G26160-MONOMER; 1.14.-.- 57724,57204 Cytochrome P450 71B16 (EC 1.14.-.-),Cytochrome P450 71B17 (EC 1.14.-.-) integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2093491;,locus:2093501; AT3G26150,AT3G26160 monooxygenase activity NA NA NA NA NA NA NA ENOG411EDSG Q1PFE5,A0A1P8AP64 Q1PFE5_ARATH,A0A1P8AP64_ARATH At1g70720 (Invertase/pectin methylesterase inhibitor family protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein 22409,23773 At1g70720 (Invertase/pectin methylesterase inhibitor family protein) (Plant invertase/pectin methylesterase inhibitor superfamily protein),Plant invertase/pectin methylesterase inhibitor superfamily protein enzyme inhibitor activity [GO:0004857] locus:2033590; AT1G70720 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411EDSD Q9ZVU4,F4I0B5 Q9ZVU4_ARATH,F4I0B5_ARATH At1g55450/T5A14_14 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (T5A14.14 protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 34475,35531 At1g55450/T5A14_14 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) (T5A14.14 protein),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168],cytoplasm [GO:0005737]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259]; response to salt stress [GO:0009651] locus:2193869; AT1G55450 Methyltransferase domain NA NA NA NA NA NA NA ENOG411EDSE Q9SIK4,A0A1P8B0G7 Q9SIK4_ARATH,A0A1P8B0G7_ARATH Bifunctional dihydrofolate reductase-thymidylate synthase FUNCTION: Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism. {ECO:0000256|PIRNR:PIRNR000389}. PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 5,6,7,8-tetrahydrofolate from 7,8-dihydrofolate: step 1/1. {ECO:0000256|PIRNR:PIRNR000389}. ARA:AT2G21550-MONOMER; R-ATH-499943; 55321,54893 Bifunctional dihydrofolate reductase-thymidylate synthase dihydrofolate reductase activity [GO:0004146]; thymidylate synthase activity [GO:0004799]; dTMP biosynthetic process [GO:0006231]; glycine biosynthetic process [GO:0006545]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate biosynthetic process [GO:0046654] locus:2049389; AT2G21550 Dihydrofolate reductase NA NA NA NA NA NA NA ENOG411EDSB P0DKG7,P0DKG6 MCC10_ARATH,MCC09_ARATH MATH domain and coiled-coil domain-containing protein At2g42480 (RTM3-like protein At2g42480),MATH domain and coiled-coil domain-containing protein At2g42475 (RTM3-like protein At2g42475) 42647,42230 MATH domain and coiled-coil domain-containing protein At2g42480 (RTM3-like protein At2g42480),MATH domain and coiled-coil domain-containing protein At2g42475 (RTM3-like protein At2g42475) AT2G42480,AT2G42475 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EDSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os02g0610200 protein A0A0N7KFN4 A0A0N7KFN4_ORYSJ Os02g0610200 OSNPB_020610200 ENOG411EDSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDSV MHK7.14,MUF8.3,MBK23.6,MBK23.7,MUF8.2 A0A1P8BBT0,A0A1P8BBS3,Q9LSX5,Q9FFS6,Q9FKR7,Q9FFS5,Q9FH20,A0A1P8BEY3,F4JYI4,F4JYI5 A0A1P8BBT0_ARATH,A0A1P8BBS3_ARATH,Q9LSX5_ARATH,Q9FFS6_ARATH,Q9FKR7_ARATH,Q9FFS5_ARATH,Q9FH20_ARATH,A0A1P8BEY3_ARATH,F4JYI4_ARATH,F4JYI5_ARATH Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like) 103447,101014,120555,118497,124315,122064,111797,100609,125493,117442 Disease resistance protein (TIR-NBS-LRR class) family,Disease resistance protein (TIR-NBS-LRR class) family (Disease resistance protein-like) integral component of membrane [GO:0016021]; ADP binding [GO:0043531],ADP binding [GO:0043531]; signal transduction [GO:0007165],integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165],ADP binding [GO:0043531] locus:2175075;,locus:2160472;,locus:2164486;,locus:2160487;,locus:2155189;,locus:2175070; AT5G41750,AT5G41540,AT5G40910,AT5G41550,AT5G49140,AT5G41740 Poxvirus A32 protein NA NA NA NA NA NA NA ENOG411EDSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDSS PHOX3,Phox3 F4K487,A0A1R7T3E0,A0A1P8BHR8,A0A1R7T3E1 PHOX3_ARATH,A0A1R7T3E0_ARATH,A0A1P8BHR8_ARATH,A0A1R7T3E1_ARATH Protein PHOX3,Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein DISRUPTION PHENOTYPE: Phox1, phox3 and phox4 triple mutants and phox1, phox2, phox3 and phox4 quadruple mutants show a 70% reduction in root hair growth (PubMed:28096376). {ECO:0000269|PubMed:28096376}. FUNCTION: Carboxylate clamp type tetratricopeptide repeat protein that may act as a potential Hsp90/Hsp70 co-chaperone (PubMed:20856808). Contributes to polar growth of root hairs (PubMed:28096376). {ECO:0000269|PubMed:28096376, ECO:0000305|PubMed:20856808}. 91522,85020,81749,90422 Protein PHOX3,Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein locus:2149174; AT5G20360 Octicosapeptide Phox Bem1p NA NA NA NA NA NA NA ENOG411EDSP Q940M1,A0A1P8AW32,Q9FWZ3,Q9S9J5,Q9ZQE3,A0A1I9LT92,F4IYY5 Q940M1_ARATH,A0A1P8AW32_ARATH,Q9FWZ3_ARATH,Q9S9J5_ARATH,Q9ZQE3_ARATH,A0A1I9LT92_ARATH,F4IYY5_ARATH At1g65370/T8F5_15 (TRAF-like family protein),TRAF-like superfamily protein,TRAF-like family protein (Uncharacterized protein F24J1.27),T23K8.6 (TRAF-like family protein) (Uncharacterized protein At1g65150),TRAF-like family protein (Uncharacterized protein At2g15710),TRAF family protein,Ubiquitin carboxyl-terminal hydrolase-like protein 25637,18264,33718,33584,42558,33220,36317 At1g65370/T8F5_15 (TRAF-like family protein),TRAF-like superfamily protein,TRAF-like family protein (Uncharacterized protein F24J1.27),T23K8.6 (TRAF-like family protein) (Uncharacterized protein At1g65150),TRAF-like family protein (Uncharacterized protein At2g15710),TRAF family protein,Ubiquitin carboxyl-terminal hydrolase-like protein cytosol [GO:0005829],vacuole [GO:0005773],hydrolase activity [GO:0016787] locus:2206240;,locus:2014998;,locus:2026751;,locus:2200385;,locus:2053674;,locus:2095587; AT1G65370,AT1G65050,AT1G69650,AT1G65150,AT2G15710,AT3G22080 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EDSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IPT/TIG domain NA NA NA NA NA NA NA ENOG411E5T7 Q9FKF9 M5162_ARATH Probable transcription factor At5g61620 (Myb-related protein At5g61620) FUNCTION: Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. 35014 Probable transcription factor At5g61620 (Myb-related protein At5g61620) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2151621; AT5G61620 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E5T4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) OSJNBb0043H09.3 protein (Os04g0243700 protein) (cDNA clone:001-023-B01, full insert sequence) Q7XT61 Q7XT61_ORYSJ Os04g0243700 OsJ_14022 OSJNBb0043H09.3 OSNPB_040243700 ENOG411E5T5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0644900 protein Q5VRC1 Q5VRC1_ORYSJ Os01g0644900 Os01g0644900 OSNPB_010644900 P0707D10.18 ENOG411E5T2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os07g0570600 protein,Os07g0570550 protein Q6YTV8,C7J515 Q6YTV8_ORYSJ,C7J515_ORYSJ Os07g0570600 Os07g0570600 OJ1121_A05.2 OSNPB_070570600,Os07g0570550 Os07g0570550 OSNPB_070570550 ENOG411E5T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AFG1-like ATPase NA NA NA NA NA NA NA ENOG411E5T0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0102750 protein A0A0P0WRW5 A0A0P0WRW5_ORYSJ Os06g0102750 OSNPB_060102750 ENOG411E5T1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os02g0725500 protein (Putative NtEPc) Q6ZFN1 Q6ZFN1_ORYSJ Os02g0725500 Os02g0725500 OJ1124_G07.17 OsJ_08211 OSNPB_020725500 ENOG411E5T8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0132400 protein Q5ZCM0 Q5ZCM0_ORYSJ Os01g0132400 Os01g0132400 OSJNBa0083M16.7 OSNPB_010132400 P0504H10.38 ENOG411E5T9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Expressed protein (Os03g0113900 protein) (cDNA clone:002-157-D07, full insert sequence) Q8GZX5 Q8GZX5_ORYSJ OSJNBa0090O10.8 LOC_Os03g02280 Os03g0113900 OSNPB_030113900 ENOG411E5TW SIC Q9SB47 SIC_ARATH Protein SICKLE (Protein ROTUNDA 3) DISRUPTION PHENOTYPE: Developmental defects due to abnormal miRNAs and siRNAs biogenesis including serrated, sickle-like leaf margin, reduced height, delayed flowering, and abnormal inflorescence phyllotaxy. Hypersensitivity to chilling and salt stresses (PubMed:23071326). Several symptoms associated with alteration in auxin (IAA) signaling such as increased IAA levels in shoot apices and reduced IAA accumulation in root meristems, reduced apical dominance and abnormal root gravitropism, growth and emergence. Altered PIN polarity and endocytosis in specific cells (PubMed:26888284). {ECO:0000269|PubMed:23071326, ECO:0000269|PubMed:26888284}. FUNCTION: Involved in miRNAs and siRNAs biogenesis and thus promotes gene silencing (PubMed:23071326). Modulates auxin (IAA) transport-related developmental programs by regulating protein phosphatase 2A (PP2As)-driven auxin efflux carrier PIN proteins recycling and polarity (PubMed:26888284). Required during development (PubMed:23071326, PubMed:26888284). Necessary for abiotic stress (e.g. chilling and salt) tolerance (PubMed:23071326). {ECO:0000269|PubMed:23071326, ECO:0000269|PubMed:26888284}. 35051 Protein SICKLE (Protein ROTUNDA 3) cytosol [GO:0005829]; nuclear body [GO:0016604]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; alternative mRNA splicing, via spliceosome [GO:0000380]; circadian rhythm [GO:0007623]; entrainment of circadian clock [GO:0009649]; mRNA splicing, via spliceosome [GO:0000398]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; production of siRNA involved in RNA interference [GO:0030422]; protein localization involved in auxin polar transport [GO:1901703]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of auxin polar transport [GO:2000012]; regulation of phosphatidate phosphatase activity [GO:1903730]; response to cold [GO:0009409]; response to salt stress [GO:0009651] DEVELOPMENTAL STAGE: Localized in the shoot apical meristem (SAM) dome, the emerging leaf and root primordia, the provascular strands of developing seedlings, and the epidermis and cortex of the meristematic and elongation zones of the primary root tip, and in the protoderm of heart- and torpedo- stage embryos. {ECO:0000269|PubMed:26888284}. TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), embryos, seedlings, root tips, and root and leaf primordia. {ECO:0000269|PubMed:26888284}. locus:2121870; AT4G24500 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411E5TT Q9LQR2 Q9LQR2_ARATH LYR family of Fe/S cluster biogenesis protein (T4O12.27) 9500 LYR family of Fe/S cluster biogenesis protein (T4O12.27) locus:4010713597; AT1G76065 Complex 1 protein (LYR family) Os02g0667000 protein,Os03g0159800 protein,Os03g0159800 protein (Fragment) Q6EU85,Q0DUZ2,A0A0P0VT83 Q6EU85_ORYSJ,Q0DUZ2_ORYSJ,A0A0P0VT83_ORYSJ Os02g0667000 OJ1486_E07.23 OsJ_07857 OSNPB_020667000,Os03g0159800 Os03g0159800 OSNPB_030159800,Os03g0159800 OSNPB_030159800 ENOG411E5TU RL1 F4JVB8 RADL1_ARATH Protein RADIALIS-like 1 (AtRL1) (Protein RAD-like 1) (Protein RADIALIS-LIKE SANT/MYB 2) (Protein RSM2) FUNCTION: Probable transcription factor. {ECO:0000250}. MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily. {ECO:0000305|PubMed:16463103}. 11296 Protein RADIALIS-like 1 (AtRL1) (Protein RAD-like 1) (Protein RADIALIS-LIKE SANT/MYB 2) (Protein RSM2) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351] locus:2136283; AT4G39250 SANT NA NA NA NA NA NA NA ENOG411E5TS Q9LP44 Q9LP44_ARATH F28N24.16 protein (Pollen Ole e 1 allergen and extensin family protein) 19095 F28N24.16 protein (Pollen Ole e 1 allergen and extensin family protein) apoplast [GO:0048046] locus:2030022; AT1G29140 pollen Ole e 1 allergen and extensin family protein NA NA NA NA NA NA NA ENOG411E5TP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0762900 protein (cDNA, clone: J075129E21, full insert sequence) Q8LR47 Q8LR47_ORYSJ Os01g0762900 Os01g0762900 OsJ_03547 OSNPB_010762900 P0512C01.41 ENOG411E5TQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5TX Q8GWM1,B3H4R5 Q8GWM1_ARATH,B3H4R5_ARATH Cytochrome C oxidase assembly factor 7918,6502 Cytochrome C oxidase assembly factor mitochondrion [GO:0005739]; mitochondrial respiratory chain complex IV assembly [GO:0033617] locus:4010713430; AT1G10865 Cytochrome c oxidase assembly protein PET191 NA NA NA NA NA NA NA ENOG411E5TY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5TF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0360700 protein (Fragment) Q0J664 Q0J664_ORYSJ Os08g0360700 Os08g0360700 OSNPB_080360700 ENOG411E5TD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411E5TE MDC12.9,T29H11_240 Q9FML0,Q9STK4 Q9FML0_ARATH,Q9STK4_ARATH At5g63130 (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein At5g63130/MDC12_9),At3g48240 (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein T29H11_240) 21546,20054 At5g63130 (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein At5g63130/MDC12_9),At3g48240 (Octicosapeptide/Phox/Bem1p family protein) (Uncharacterized protein T29H11_240) locus:2161907;,locus:2101175; AT5G63130,AT3G48240 PB1 NA NA NA NA NA NA NA ENOG411E5TB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Intraflagellar transport complex B protein 46 C terminal NA NA NA NA NA NA NA ENOG411E5TM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0663051 protein,Os07g0443500 protein A2ZW92,A0A0P0X597 A2ZW92_ORYSJ,A0A0P0X597_ORYSJ Os01g0663051 OsJ_02909 OSNPB_010663051,Os07g0443500 OSNPB_070443500 ENOG411E5TK F7A19.1 A0A1P8AQR3,A0A1P8AQS5,Q9XI94,A0A1P8AQT9,A0A1P8AR05 A0A1P8AQR3_ARATH,A0A1P8AQS5_ARATH,Q9XI94_ARATH,A0A1P8AQT9_ARATH,A0A1P8AR05_ARATH Remorin family protein,F7A19.1 protein (Remorin family protein) 32533,28903,39626,43256,33679 Remorin family protein,F7A19.1 protein (Remorin family protein) locus:2014749; AT1G13920 Remorin C-terminal region NA NA NA NA NA NA NA ENOG411E5TH Q96253 ATP5E_ARATH ATP synthase subunit epsilon, mitochondrial (ATPase subunit epsilon) FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. 3.6.3.14; 7832 ATP synthase subunit epsilon, mitochondrial (ATPase subunit epsilon) mitochondrial inner membrane [GO:0005743]; mitochondrial proton-transporting ATP synthase complex [GO:0005753]; mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) [GO:0000275]; mitochondrion [GO:0005739]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]; ATP synthesis coupled proton transport [GO:0015986] locus:2017657; AT1G51650 atp synthase Os08g0250200 protein (cDNA, clone: J100002N17, full insert sequence) Q0J6X7 Q0J6X7_ORYSJ Os08g0250200 Os08g0250200 OSNPB_080250200 ENOG411E267 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Os02g0666600 protein Q6ESG7 Q6ESG7_ORYSJ Os02g0666600 Os02g0666600 OJ1486_E07.18 OSNPB_020666600 P0461B08.33 ENOG411E264 PIP2-2,PIP2-3,PIP2-4,PIP2-5,PIP2-1,PIP2B P43287,P30302,Q9FF53,Q9SV31,P43286,A0A1P8AYA1 PIP22_ARATH,PIP23_ARATH,PIP24_ARATH,PIP25_ARATH,PIP21_ARATH,A0A1P8AYA1_ARATH Aquaporin PIP2-2 (Plasma membrane intrinsic protein 2-2) (AtPIP2;2) (Plasma membrane intrinsic protein 2b) (PIP2b) (TMP2b) [Cleaved into: Aquaporin PIP2-2, N-terminally processed],Aquaporin PIP2-3 (Plasma membrane intrinsic protein 2-3) (AtPIP2;3) (Plasma membrane intrinsic protein 2c) (PIP2c) (RD28-PIP) (TMP2C) (Water stress-induced tonoplast intrinsic protein) (WSI-TIP) [Cleaved into: Aquaporin PIP2-3, N-terminally processed],Probable aquaporin PIP2-4 (Plasma membrane intrinsic protein 2.4) (AtPIP2;4) [Cleaved into: Probable aquaporin PIP2-4, N-terminally processed],Probable aquaporin PIP2-5 (Plasma membrane intrinsic protein 2-5) (AtPIP2;5) (Plasma membrane intrinsic protein 2d) (PIP2d),Aquaporin PIP2-1 (Plasma membrane intrinsic protein 2-1) (AtPIP2;1) (Plasma membrane intrinsic protein 2a) (PIP2a) [Cleaved into: Aquaporin PIP2-1, N-terminally processed],Plasma membrane intrinsic protein 2 Reduced hydraulic conductivity in roots-C. Maurel-2003 FUNCTION: Water channel required to facilitate the transport of water across cell membrane. Plays an predominant role in root water uptake process in conditions of reduced transpiration, and in osmotic fluid transport. Its function is impaired by Hg(2+). Inhibited by cytosolic acidosis which occurs during anoxia in roots. {ECO:0000269|PubMed:12566588, ECO:0000269|PubMed:14508488, ECO:0000269|PubMed:7920711}.,FUNCTION: Water channel required to facilitate the transport of water across cell membrane; mercury-insensitive. {ECO:0000269|PubMed:7846153}.,FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}.,FUNCTION: Water channel required to facilitate the transport of water across cell membrane. Probably involved in root water uptake. Its function is impaired by Hg(2+). {ECO:0000269|PubMed:7920711}. 30453,30429,30952,30590,30474,35411 Aquaporin PIP2-2 (Plasma membrane intrinsic protein 2-2) (AtPIP2;2) (Plasma membrane intrinsic protein 2b) (PIP2b) (TMP2b) [Cleaved into: Aquaporin PIP2-2, N-terminally processed],Aquaporin PIP2-3 (Plasma membrane intrinsic protein 2-3) (AtPIP2;3) (Plasma membrane intrinsic protein 2c) (PIP2c) (RD28-PIP) (TMP2C) (Water stress-induced tonoplast intrinsic protein) (WSI-TIP) [Cleaved into: Aquaporin PIP2-3, N-terminally processed],Probable aquaporin PIP2-4 (Plasma membrane intrinsic protein 2.4) (AtPIP2;4) [Cleaved into: Probable aquaporin PIP2-4, N-terminally processed],Probable aquaporin PIP2-5 (Plasma membrane intrinsic protein 2-5) (AtPIP2;5) (Plasma membrane intrinsic protein 2d) (PIP2d),Aquaporin PIP2-1 (Plasma membrane intrinsic protein 2-1) (AtPIP2;1) (Plasma membrane intrinsic protein 2a) (PIP2a) [Cleaved into: Aquaporin PIP2-1, N-terminally processed],Plasma membrane intrinsic protein 2 chloroplast [GO:0009507]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; mRNA binding [GO:0003729]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; water transport [GO:0006833],integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; response to water deprivation [GO:0009414],integral component of plasma membrane [GO:0005887]; plasmodesma [GO:0009506]; water channel activity [GO:0015250]; hydrogen peroxide transmembrane transport [GO:0080170]; ion transmembrane transport [GO:0034220]; response to abscisic acid [GO:0009737]; root hair elongation [GO:0048767],integral component of plasma membrane [GO:0005887]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220]; water transport [GO:0006833],chloroplast [GO:0009507]; integral component of plasma membrane [GO:0005887]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; ubiquitin protein ligase binding [GO:0031625]; water channel activity [GO:0015250]; hydrogen peroxide transmembrane transport [GO:0080170]; ion transmembrane transport [GO:0034220]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; water transport [GO:0006833],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Predominantly expressed in the root, with a strong expression in the cortex, endodermis, and stele. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:12566588}.,TISSUE SPECIFICITY: Widely expressed, except in seeds. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:7846153}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Expressed in green siliques. {ECO:0000269|PubMed:11806824}.,TISSUE SPECIFICITY: Predominantly expressed in roots and green siliques. Also expressed at lower level above ground and in flower buds. {ECO:0000269|PubMed:11806824, ECO:0000269|PubMed:7920711}. locus:2061773;,locus:2061763;,locus:2175831;,locus:2082642;,locus:2084031; AT2G37170,AT2G37180,AT5G60660,AT3G54820,AT3G53420 plasma membrane intrinsic protein Probable aquaporin PIP2-2 (OsPIP2;2) (Plasma membrane intrinsic protein 2-2),Probable aquaporin PIP2-1 (OsPIP2;1) (Plasma membrane intrinsic protein 2-1) (Plasma membrane intrinsic protein 2a) (PIP2a),Probable aquaporin PIP2-3 (OsPIP2;3) (Plasma membrane intrinsic protein 2-3),Os02g0629200 protein Q6K215,Q8H5N9,Q7XUA6,A0A0P0VM00 PIP22_ORYSJ,PIP21_ORYSJ,PIP23_ORYSJ,A0A0P0VM00_ORYSJ PIP2-2 Os02g0629200 LOC_Os02g41860 B1469H02.22-1,PIP2-1 PIP2a Os07g0448800 LOC_Os07g26690 OJ1047_A06.117 OsJ_023145,PIP2-3 Os04g0521100 LOC_Os04g44060 OSJNBa0019D11.16,Os02g0629200 OSNPB_020629200 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. ENOG411E263 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os06g0231600 protein,Os02g0743700 protein (Putative NEP1-interacting protein) (cDNA clone:006-307-D05, full insert sequence) (cDNA clone:J023047F13, full insert sequence) B9FSC2,Q6Z2U9 B9FSC2_ORYSJ,Q6Z2U9_ORYSJ Os06g0231600 OsJ_20699 OSNPB_060231600,OJ1734_E02.21-1 Os02g0743700 OSNPB_020743700 ENOG411E269 MKP11.6 Q94C50,F4KGX3 Q94C50_ARATH,F4KGX3_ARATH Transmembrane protein, putative (DUF1218) (Uncharacterized protein At5g17210),Transmembrane protein, putative (DUF1218) 22870,15760 Transmembrane protein, putative (DUF1218) (Uncharacterized protein At5g17210),Transmembrane protein, putative (DUF1218) integral component of membrane [GO:0016021] locus:2167200; AT5G17210 expressed protein Os06g0114700 protein (cDNA clone:006-311-B09, full insert sequence) Q9LWS9 Q9LWS9_ORYSJ Os06g0114700 OsJ_19891 OSJNBa0019F11.8 OSNPB_060114700 P0541H01.30 ENOG411E26C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA jasmonate-induced protein Dirigent protein,Dirigent protein (Fragment) Q2QVJ4,A0A0P0Y725,A0A0P0Y8E1 Q2QVJ4_ORYSJ,A0A0P0Y725_ORYSJ,A0A0P0Y8E1_ORYSJ Os12g0227500 LOC_Os12g12600 Os12g0227500 OsJ_35621 OSNPB_120227500,Os12g0144200 OSNPB_120144200,Os12g0228700 OSNPB_120228700 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411E26B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411E26M PCMP-A1 Q9C6R9 PPR66_ARATH Pentatricopeptide repeat-containing protein At1g31790 46254 Pentatricopeptide repeat-containing protein At1g31790 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2034491; AT1G31790 Pentatricopeptide repeat-containing protein Os07g0244400 protein (Putative pentatricopeptide repeat-containing protein) Q8H5Q4 Q8H5Q4_ORYSJ OJ1341_A08.137 Os07g0244400 OJ1058_C08.3 OsJ_23686 OSNPB_070244400 ENOG411E26K O82222,Q8LEC2 O82222_ARATH,Q8LEC2_ARATH Expressed protein (Transmembrane protein (DUF788)) (Uncharacterized protein At2g23940/T29E15.14),At4g30500 (Transmembrane protein (DUF788)) 19627,19305 Expressed protein (Transmembrane protein (DUF788)) (Uncharacterized protein At2g23940/T29E15.14),At4g30500 (Transmembrane protein (DUF788)) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuole [GO:0005773]; vacuolar protein processing [GO:0006624],integral component of membrane [GO:0016021]; vacuole [GO:0005773]; vacuolar protein processing [GO:0006624] locus:2061451;,locus:2118796; AT2G23940,AT4G30500 Protein of unknown function (DUF788) Os02g0666800 protein (cDNA clone:J033039F09, full insert sequence) Q6EU87 Q6EU87_ORYSJ Os02g0666800 Os02g0666800 OJ1486_E07.21 OsJ_07855 OSNPB_020666800 ENOG411E26J PLC9,PLC6 Q6NMA7,Q8GV43 PLCD9_ARATH,PLCD6_ARATH Phosphoinositide phospholipase C 9 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC9) (AtPLC9) (PI-PLC9),Phosphoinositide phospholipase C 6 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC6) (AtPLC6) (AtPLC8) (PI-PLC6) FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. {ECO:0000250}. ARA:AT3G47220-MONOMER;,ARA:AT2G40116-MONOMER; R-ATH-112043;R-ATH-114604;R-ATH-1855204;R-ATH-202433;R-ATH-399997;R-ATH-416476;R-ATH-434316;R-ATH-5607764; 3.1.4.11; Phosphatidylinositol signaling system (04070),Calcium signaling pathway (04020),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.4.11 61165,70038 Phosphoinositide phospholipase C 9 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC9) (AtPLC9) (PI-PLC9),Phosphoinositide phospholipase C 6 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC6) (AtPLC6) (AtPLC8) (PI-PLC6) intracellular [GO:0005622]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; calcium ion homeostasis [GO:0055074]; heat acclimation [GO:0010286]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042],intracellular [GO:0005622]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Expressed in leaves, roots, flowers and siliques. {ECO:0000269|Ref.6}.,TISSUE SPECIFICITY: Expressed in leaves, flowers and siliques, but not in roots. {ECO:0000269|Ref.6}. locus:2075696;,locus:504956034; AT3G47220,AT2G40116 phospholipase C Phosphoinositide phospholipase C (EC 3.1.4.11) Q2QNK1 Q2QNK1_ORYSJ Os12g0562400 LOC_Os12g37560 OsJ_36515 OSNPB_120562400 ENOG411E26I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Male sterility protein Fatty acyl-CoA reductase (EC 1.2.1.84) Q6ZJ06 Q6ZJ06_ORYSJ Os08g0557800 OJ1150_A11.29 OSNPB_080557800 FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. {ECO:0000256|RuleBase:RU363097}. ENOG411EDQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF821 NA NA NA NA NA NA NA ENOG411E1UA ndhJ P56754 NDHJ_ARATH NAD(P)H-quinone oxidoreductase subunit J, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit J) (NADH-plastoquinone oxidoreductase subunit J) FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01357}. ARA:ATCG00420-MONOMER; 1.6.5.- 18558 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit J) (NADH-plastoquinone oxidoreductase subunit J) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; quinone binding [GO:0048038]; cellular respiration [GO:0045333]; cellular response to sulfate starvation [GO:0009970]; transport [GO:0006810] locus:504954665; ATCG00420 NDH shuttles electrons from NAD(P)H plastoquinone via FMN and iron-sulfur (Fe-S) centers to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation and thus conserves the redox energy in a proton gradient (By similarity) NAD(P)H-quinone oxidoreductase subunit J, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit J) (NADH-plastoquinone oxidoreductase subunit J) P0C340 NDHJ_ORYSJ ndhJ LOC_Osp1g00370 Nip057 FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000255|HAMAP-Rule:MF_01357}. ENOG411E1UC Q6NM71 Q6NM71_ARATH At3g56510 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At3g56510) 29517 At3g56510 (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At3g56510) nucleolus [GO:0005730]; RNA binding [GO:0003723]; endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000480]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000472]; small-subunit processome assembly [GO:0034462] locus:2102594; AT3G56510 Pre-rRNA-processing protein Os05g0129400 protein (cDNA clone:J033091I05, full insert sequence),Os07g0662600 protein (TBP-binding protein-like) Q688Q6,Q8H2U2 Q688Q6_ORYSJ,Q8H2U2_ORYSJ Os05g0129400 Os05g0129400 OsJ_16994 OSJNBa0056I11.14 OSNPB_050129400,P0453E03.117 Os07g0662600 OsJ_25463 OSNPB_070662600 ENOG411E1UD MCA23.6 Q84JS4,F4JYN2 Q84JS4_ARATH,F4JYN2_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At5g47740),Adenine nucleotide alpha hydrolases-like superfamily protein 27529,27786 Adenine nucleotide alpha hydrolases-like superfamily protein (Uncharacterized protein At5g47740),Adenine nucleotide alpha hydrolases-like superfamily protein hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2160907; AT5G47740 U-box domain-containing protein Os06g0291500 protein (cDNA clone:J013158G20, full insert sequence) Q0DCT9 Q0DCT9_ORYSJ Os06g0291500 Os06g0291500 OSNPB_060291500 ENOG411E1UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase Os11g0274700 protein,Os10g0200000 protein,Os11g0226201 protein,Os10g0200000 protein (Fragment) A3CAF5,Q0IYK2,A0A0N7KSN2,A0A0P0XSF1 A3CAF5_ORYSJ,Q0IYK2_ORYSJ,A0A0N7KSN2_ORYSJ,A0A0P0XSF1_ORYSJ Os11g0274700 OsJ_33614 OSNPB_110274700,Os10g0200000 Os10g0200000 OSNPB_100200000,Os11g0226201 OSNPB_110226201,Os10g0200000 OSNPB_100200000 ENOG411E1UF BGLU41 Q9FIU7,A0A1P8BA38,A0A1P8BA32 BGL41_ARATH,A0A1P8BA38_ARATH,A0A1P8BA32_ARATH Putative beta-glucosidase 41 (AtBGLU41) (EC 3.2.1.21),Beta glucosidase 41 ARA:AT5G54570-MONOMER; R-ATH-189085; 3.2.1.21 61463,51535,50481 Putative beta-glucosidase 41 (AtBGLU41) (EC 3.2.1.21),Beta glucosidase 41 plant-type cell wall [GO:0009505]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2172134; AT5G54570 beta-glucosidase Beta-glucosidase 25 (Os6bglu25) (EC 3.2.1.21),Os06g0683300 protein (Fragment) Q0DA21,A0A0P0X062 BGL25_ORYSJ,A0A0P0X062_ORYSJ BGLU25 Os06g0683300 LOC_Os06g46940,Os06g0683300 OSNPB_060683300 ENOG411E1UH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) E3 ubiquitin-protein ligase SIRP1 (EC 2.3.2.27) (Salt-induced RING finger protein 1) (OsSIRP1) Q6AVN2 SIRP1_ORYSJ SIRP1 Os05g0488800 LOC_Os05g40980 OJ1119_H02.11 OsJ_19008 FUNCTION: Possesses E3 ubiqutin-protein ligase activity in vitro. Acts as negative regulator of salinity stress tolerance mediated by the ubiquitin-proteasome degradation pathway. {ECO:0000269|PubMed:27118216}. MISCELLANEOUS: Plants over-expressing SIRP1 exhibit enhanced sensitivity to seed germination and root growth inhibition by salt stress. {ECO:0000269|PubMed:27118216}. ENOG411E1UP PLP3 O23181 PLP3_ARATH Patatin-like protein 3 (AtPLP3) (EC 3.1.1.-) (Patatin-related phospholipase A IIbeta) (pPLAIIb) (Phospholipase A IVC) (AtPLAIVC) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit an impaired response to phosphate deficiency during root development. {ECO:0000269|PubMed:20053799}. Long hypocotyl; Root growth insensitive to phosphate starvation-G. Scherer-2010 FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Catalyzes the hydrolysis of the neutral lipids monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG) and phosphatidylglycerol (PG), and less efficiently the polar lipids phosphatidylcholine (PC) and phosphatidylinositol (PI), but not the storage lipid triacylglycerol (TAG). May play a role in root development. {ECO:0000269|PubMed:20053799}. ARA:GQT-160-MONOMER; 3.1.1.- 47204 Patatin-like protein 3 (AtPLP3) (EC 3.1.1.-) (Patatin-related phospholipase A IIbeta) (pPLAIIb) (Phospholipase A IVC) (AtPLAIVC) cytoplasm [GO:0005737]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; phospholipase activity [GO:0004620]; defense response [GO:0006952]; lipid catabolic process [GO:0016042]; response to abscisic acid [GO:0009737] TISSUE SPECIFICITY: Expressed specifically in the stigma, ovary and funiculus of the ovary. {ECO:0000269|PubMed:12226489, ECO:0000269|PubMed:20053799}. locus:2115065; AT4G37050 Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411E1US Q8GWK2,A0A1P8B1K7,F4IL00 AP2L4_ARATH,A0A1P8B1K7_ARATH,F4IL00_ARATH AP2-like ethylene-responsive transcription factor At2g41710,Integrase-type DNA-binding superfamily protein FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 47094,50521,50448 AP2-like ethylene-responsive transcription factor At2g41710,Integrase-type DNA-binding superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; transcription, DNA-templated [GO:0006351] locus:2054341; AT2G41710 transcription factor Os05g0389000 protein (Fragment) Q0DIH8 Q0DIH8_ORYSJ Os05g0389000 Os05g0389000 OSNPB_050389000 ENOG411E1UR Q9FGE4 Q9FGE4_ARATH RING-H2 zinc finger protein (Uncharacterized protein At5g24460) (Uncharacterized protein At5g24460; T31K7.4) 33449 RING-H2 zinc finger protein (Uncharacterized protein At5g24460) (Uncharacterized protein At5g24460; T31K7.4) cell wall [GO:0005618]; hydrolase activity [GO:0016787] locus:2184002; AT5G24460 NA Os06g0712200 protein (cDNA clone:006-302-C10, full insert sequence) Q5Z802 Q5Z802_ORYSJ Os06g0712200 OJ1663_H12.20 OsJ_22631 OSNPB_060712200 P0655A07.53 ENOG411E1UU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (By similarity) Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45),Os08g0111200 protein Q6ZC53,A0A0P0XBA7 Q6ZC53_ORYSJ,A0A0P0XBA7_ORYSJ Os08g0111200 Os08g0111200 OSNPB_080111200 P0007D08.40 P0498H04.1,Os08g0111200 OSNPB_080111200 FUNCTION: Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide. {ECO:0000256|PIRNR:PIRNR028944}. ENOG411E1UV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VWA Os06g0576900 protein (Os06g0578700 protein) (cDNA, clone: J100049C12, full insert sequence),Expressed protein (Os11g0687200 protein) (cDNA clone:J023050F01, full insert sequence),Expressed protein (Os11g0687200 protein) (cDNA clone:002-124-G07, full insert sequence),Os11g0687200 protein B7FA66,Q2QZH2,B7F036,A0A0P0Y5F2 B7FA66_ORYSJ,Q2QZH2_ORYSJ,B7F036_ORYSJ,A0A0P0Y5F2_ORYSJ Os06g0578700 Os06g0576900 OsJ_21785 OSNPB_060578700,Os11g0687200 LOC_Os11g46000 Os11g0687200 OSNPB_110687200,Os11g0687200 LOC_Os11g46000 OSNPB_110687200,Os11g0687200 OSNPB_110687200 ENOG411E1UX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:LACT Os02g0590400 protein (Putative acyltransferase (46.9 kD) (1H765)) (cDNA clone:006-304-B04, full insert sequence) (cDNA clone:J023114E18, full insert sequence),Os02g0589000 protein (Putative acyltransferase (46.9 kD) (1H765)),Os02g0589700 protein,Os02g0590200 protein,Os02g0590000 protein,Os02g0589100 protein,Os02g0589900 protein Q6YY78,Q6YY42,A0A0P0VL15,A0A0P0VL63,A0A0P0VL05,A0A0N7KFK7,A0A0N7KFK8 Q6YY78_ORYSJ,Q6YY42_ORYSJ,A0A0P0VL15_ORYSJ,A0A0P0VL63_ORYSJ,A0A0P0VL05_ORYSJ,A0A0N7KFK7_ORYSJ,A0A0N7KFK8_ORYSJ Os02g0590400 Os02g0590400 OSJNBa0006O15.23 OSNPB_020590400,Os02g0589000 OSJNBb0046O12.30 OSNPB_020589000,Os02g0589700 OSNPB_020589700,Os02g0590200 OSNPB_020590200,Os02g0590000 OSNPB_020590000,Os02g0589100 OSNPB_020589100,Os02g0589900 OSNPB_020589900 ENOG411E1U6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabidopsis protein of unknown function Os08g0551300 protein Q6Z3H6 Q6Z3H6_ORYSJ Os08g0551300 Os08g0551300 OsJ_28206 OSJNBb0011H15.10 OSNPB_080551300 ENOG411E3FW SWEET9 Q9ZV02 SWET9_ARATH Bidirectional sugar transporter SWEET9 (AtSWEET9) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 9) DISRUPTION PHENOTYPE: In sweet9-1, reduced nectar production accompanied by starch accumulation in nectaries. {ECO:0000269|PubMed:24670640}. FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane (By similarity). Nectary-specific sugar transporter required for nectar production by mediating the secretion of sucrose from the nectary parenchyma to the extracellular space. {ECO:0000250|UniProtKB:Q8L9J7, ECO:0000269|PubMed:24670640, ECO:0000303|PubMed:25988582}. R-ATH-189200; 28716 Bidirectional sugar transporter SWEET9 (AtSWEET9) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 9) cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; trans-Golgi network membrane [GO:0032588]; vesicle membrane [GO:0012506]; sucrose transmembrane transporter activity [GO:0008515]; sugar transmembrane transporter activity [GO:0051119]; nectar secretion [GO:0071836] DEVELOPMENTAL STAGE: Accumulates progressively in floral nectaries during maturation, reaching highest levels during maximal nectar secretion. {ECO:0000269|PubMed:24670640}. TISSUE SPECIFICITY: Specifically expressed in nectaries, mostly in the lower half of nectary parenchyma. {ECO:0000269|PubMed:24670640}. locus:2064976; AT2G39060 Sugar efflux transporter for intercellular exchange NA NA NA NA NA NA NA ENOG411E3FF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA membrane steroid-binding protein Membrane steroid binding protein 1, putative, expressed (Os03g0321000 protein) (cDNA clone:J033135E06, full insert sequence) Q10M72 Q10M72_ORYSJ LOC_Os03g20470 Os03g0321000 OSNPB_030321000 ENOG411E3FG ERV1,Erv1 Q8GXX0,A0A1P8AP23 ERV1_ARATH,A0A1P8AP23_ARATH FAD-linked sulfhydryl oxidase ERV1 (AtErv1) (EC 1.8.3.2) (Mitochondrial sulfhydryl oxidase ERV1),Sulfhydryl oxidase (EC 1.8.3.2) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:16893552}. Embryo defective; Preglobular / Globular-D. Meinke-2011 FUNCTION: FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation (By similarity) (PubMed:14996837). Oxidizes thioredoxin in vitro (PubMed:14996837). Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space. Forms a redox cycle with MIA40 that involves a disulfide relay system. Important for maintaining the cysteine residues in MIA40 in an oxidized state (By similarity). {ECO:0000250|UniProtKB:P27882, ECO:0000255|PROSITE-ProRule:PRU00654, ECO:0000269|PubMed:14996837}. ARA:AT1G49880-MONOMER; 1.8.3.2; 1.8.3.2 21600,17787 FAD-linked sulfhydryl oxidase ERV1 (AtErv1) (EC 1.8.3.2) (Mitochondrial sulfhydryl oxidase ERV1),Sulfhydryl oxidase (EC 1.8.3.2) mitochondrion [GO:0005739]; flavin adenine dinucleotide binding [GO:0050660]; flavin-linked sulfhydryl oxidase activity [GO:0016971]; identical protein binding [GO:0042802]; protein disulfide oxidoreductase activity [GO:0015035]; thiol oxidase activity [GO:0016972],thiol oxidase activity [GO:0016972] locus:2007283; AT1G49880 sulfhydryl oxidase FAD-linked sulfhydryl oxidase ERV1 (EC 1.8.3.2) (Mitochondrial sulfhydryl oxidase ERV1) Q10Q80 ERV1_ORYSJ ERV1 Os03g0206300 LOC_Os03g10850 FUNCTION: FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation (By similarity). Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space. Forms a redox cycle with MIA40 that involves a disulfide relay system. Important for maintaining the cysteine residues in MIA40 in an oxidized state (By similarity). {ECO:0000250|UniProtKB:P27882, ECO:0000255|PROSITE-ProRule:PRU00654}. ENOG411EDNQ UGT85A1,UGT85A4,UGT85A3 Q9SK82,Q9M9E7,Q9LMF1 U85A1_ARATH,U85A4_ARATH,U85A3_ARATH UDP-glycosyltransferase 85A1 (EC 2.4.1.-) (Cytokinin-O-glucosyltransferase 2) (Zeatin O-glucosyltransferase 2) (AtZOG2),UDP-glycosyltransferase 85A4 (EC 2.4.1.-),UDP-glycosyltransferase 85A3 (EC 2.4.1.-) Susceptible to bacterial infection-R. Cameron-2009 FUNCTION: Involved in the O-glucosylation of trans-zeatin and dihydrozeatin. Also active in vitro on cis-zeatin. Not active on N-glucosylated substrates. {ECO:0000269|PubMed:15342621}. MetaCyc:AT1G22400-MONOMER;,ARA:AT1G78270-MONOMER; 2.4.1.203; 2.4.1.- 55010,55394,54609 UDP-glycosyltransferase 85A1 (EC 2.4.1.-) (Cytokinin-O-glucosyltransferase 2) (Zeatin O-glucosyltransferase 2) (AtZOG2),UDP-glycosyltransferase 85A4 (EC 2.4.1.-),UDP-glycosyltransferase 85A3 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; cis-zeatin O-beta-D-glucosyltransferase activity [GO:0050502]; glucuronosyltransferase activity [GO:0015020]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; trans-zeatin O-beta-D-glucosyltransferase activity [GO:0050403]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; glucuronosyltransferase activity [GO:0015020]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Expressed in root tips, lateral root initials, root apex, shoots, leaf periphery, leaf primordia and flowers. {ECO:0000269|PubMed:17498920}.,TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:17498920}.,TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:17498920}. locus:2009557;,locus:2032105;,locus:2196490; AT1G22400,AT1G78270,AT1G22380 UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EBU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBU9 Q94BS7 Q94BS7_ARATH SPla/RYanodine receptor (SPRY) domain-containing protein (Uncharacterized protein At4g09340) 50194 SPla/RYanodine receptor (SPRY) domain-containing protein (Uncharacterized protein At4g09340) locus:2137946; AT4G09340 SPla RYanodine receptor (SPRY) domain-containing protein NA NA NA NA NA NA NA ENOG411EBU3 Q9LPJ7 FB31_ARATH Putative F-box protein At1g32660 50294 Putative F-box protein At1g32660 locus:2035584; AT1G32660 F-box domain Os06g0170750 protein,Os06g0170866 protein,Os06g0170700 protein,Os06g0170766 protein Q5SNM7,Q5SNM6,A0A0P0WTL0,A0A0P0WTA2 Q5SNM7_ORYSJ,Q5SNM6_ORYSJ,A0A0P0WTL0_ORYSJ,A0A0P0WTA2_ORYSJ P0675A05.11 Os06g0170750 OSNPB_060170750,Os06g0170866 OSNPB_060170866 P0675A05.15,Os06g0170700 OSNPB_060170700,Os06g0170766 OSNPB_060170766 ENOG411EBU0 FKBP17-3 Q8LB65 FK173_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-3, chloroplastic (PPIase FKBP17-3) (EC 5.2.1.8) (FK506-binding protein 17-3) (AtFKBP17-3) (Immunophilin FKBP17-3) (Rotamase) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 25748 Peptidyl-prolyl cis-trans isomerase FKBP17-3, chloroplastic (PPIase FKBP17-3) (EC 5.2.1.8) (FK506-binding protein 17-3) (AtFKBP17-3) (Immunophilin FKBP17-3) (Rotamase) chloroplast thylakoid lumen [GO:0009543]; cytoplasm [GO:0005737]; FK506 binding [GO:0005528]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; chaperone-mediated protein folding [GO:0061077] locus:505006221; AT1G73655 FKBP-type peptidyl-prolyl cis-trans isomerase NA NA NA NA NA NA NA ENOG411EBU1 F12M12_130 Q9LX79,Q9ZU68 Q9LX79_ARATH,Q9ZU68_ARATH Protein kinase superfamily protein (Protein kinase-like),Protein kinase superfamily protein (Uncharacterized protein At2g18530) 45316,24662 Protein kinase superfamily protein (Protein kinase-like),Protein kinase superfamily protein (Uncharacterized protein At2g18530) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2075281;,locus:2046278; AT3G46160,AT2G18530 STYKc NA NA NA NA NA NA NA ENOG411EBU6 LCV3 F4IQJ6 LCV3_ARATH Protein LIKE COV 3 30454 Protein LIKE COV 3 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] locus:2062131; AT2G18460 Protein of unknown function (DUF502) NA NA NA NA NA NA NA ENOG411EBU7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EBU4 NAC084 Q9FFX5,A0A1P8BAC2,A0A1P8BAC0 Q9FFX5_ARATH,A0A1P8BAC2_ARATH,A0A1P8BAC0_ARATH At5g14000 (NAC domain containing protein 84) (Uncharacterized protein At5g14000),NAC domain containing protein 84 23488,29710,18018 At5g14000 (NAC domain containing protein 84) (Uncharacterized protein At5g14000),NAC domain containing protein 84 nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2159073; AT5G14000 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411EBU5 Q3EAR4 Q3EAR4_ARATH Phosphoenolpyruvate carboxylase-related / PEP carboxylase-like protein 5088 Phosphoenolpyruvate carboxylase-related / PEP carboxylase-like protein cytosol [GO:0005829] locus:504955723; AT3G42628 Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle Os02g0244700 protein (Putative phosphoenolpyruvate carboxylase) (cDNA clone:J013001G17, full insert sequence) (cDNA clone:J013011N21, full insert sequence),Os02g0244700 protein (Phosphoenolpyruvate carboxylase-like),Os02g0244700 protein (Fragment) Q6EUD7,Q6EUD8,A0A0P0VH17 Q6EUD7_ORYSJ,Q6EUD8_ORYSJ,A0A0P0VH17_ORYSJ Os02g0244700 OJ1134_F06.2-1 OSNPB_020244700,OJ1134_F06.2-2 Os02g0244700 OSNPB_020244700,Os02g0244700 OSNPB_020244700 ENOG411EBUZ TIF4A-3 Q9CAI7 IF4A3_ARATH Eukaryotic initiation factor 4A-3 (eIF-4A-3) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-3) (DEAD-box ATP-dependent RNA helicase 23) FUNCTION: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity). {ECO:0000250}. R-ATH-156827;R-ATH-72662;R-ATH-72702; 3.6.4.13 46771 Eukaryotic initiation factor 4A-3 (eIF-4A-3) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-3) (DEAD-box ATP-dependent RNA helicase 23) cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plant-type cell wall [GO:0009505]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; translation initiation factor activity [GO:0003743]; regulation of gene expression [GO:0010468]; RNA secondary structure unwinding [GO:0010501]; translational initiation [GO:0006413] locus:2030285; AT1G72730 translation Initiation Factor NA NA NA NA NA NA NA ENOG411EBUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EBUR MPK12 Q8GYQ5,A0A1P8B1V3,F4IH84 MPK12_ARATH,A0A1P8B1V3_ARATH,F4IH84_ARATH Mitogen-activated protein kinase 12 (AtMPK12) (MAP kinase 12) (EC 2.7.11.24),Mitogen-activated protein kinase 12 Enhanced transpirational water loss.Impaired stomatal response to ABA and reactive oxygen. FUNCTION: Negative regulator of the auxin transduction signaling pathway. {ECO:0000269|PubMed:19000167}. R-ATH-110056;R-ATH-112409;R-ATH-112411;R-ATH-198753;R-ATH-198765;R-ATH-202670;R-ATH-2559582;R-ATH-3371453;R-ATH-375165;R-ATH-442742;R-ATH-444257;R-ATH-445144;R-ATH-5673001;R-ATH-5674135;R-ATH-5674499;R-ATH-6798695;R-ATH-881907; 2.7.11.24 42475,46137,36964 Mitogen-activated protein kinase 12 (AtMPK12) (MAP kinase 12) (EC 2.7.11.24),Mitogen-activated protein kinase 12 cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; MAP kinase activity [GO:0004707]; protein tyrosine kinase activity [GO:0004713]; auxin-activated signaling pathway [GO:0009734]; intracellular signal transduction [GO:0035556]; regulation of gene expression [GO:0010468]; response to auxin [GO:0009733]; response to indolebutyric acid [GO:0080026],ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques, mostly around stomata. {ECO:0000269|PubMed:19000167}. locus:2062897; AT2G46070 Lipopolysaccharide kinase (Kdo/WaaP) family NA NA NA NA NA NA NA ENOG411EBUS MIOX5 Q9FJU4,A0A1P8BGX3 MIOX5_ARATH,A0A1P8BGX3_ARATH Inositol oxygenase 5 (EC 1.13.99.1) (Myo-inositol oxygenase 5) (AtMIOX5) (MI oxygenase 5),Myo-inositol oxygenase 5 FUNCTION: Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in plant ascorbate biosynthesis. {ECO:0000269|PubMed:14976233, ECO:0000269|PubMed:15660207}. PATHWAY: Polyol metabolism; myo-inositol degradation into D-glucuronate; D-glucuronate from myo-inositol: step 1/1. ARA:AT5G56640-MONOMER; R-ATH-1855183; 1.13.99.1; 1.13.99.1 36544,33189 Inositol oxygenase 5 (EC 1.13.99.1) (Myo-inositol oxygenase 5) (AtMIOX5) (MI oxygenase 5),Myo-inositol oxygenase 5 cytoplasm [GO:0005737]; inositol oxygenase activity [GO:0050113]; iron ion binding [GO:0005506]; inositol catabolic process [GO:0019310]; L-ascorbic acid biosynthetic process [GO:0019853],cytoplasm [GO:0005737]; inositol oxygenase activity [GO:0050113]; iron ion binding [GO:0005506]; inositol catabolic process [GO:0019310] TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:15660207}. locus:2165061; AT5G56640 inositol oxygenase NA NA NA NA NA NA NA ENOG411EBUP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBUQ ATHB-54,ATHB54 P0CJ65,A0A1P8AT13,A0A1P8AT71,A0A1P8AT17 ATB54_ARATH,A0A1P8AT13_ARATH,A0A1P8AT71_ARATH,A0A1P8AT17_ARATH Homeobox-leucine zipper protein ATHB-54 (HD-ZIP protein ATHB-54) (Homeodomain transcription factor ATHB-54),Homeobox-leucine zipper protein family FUNCTION: Probable transcription factor. {ECO:0000250}. 26624,21711,29698,20849 Homeobox-leucine zipper protein ATHB-54 (HD-ZIP protein ATHB-54) (Homeodomain transcription factor ATHB-54),Homeobox-leucine zipper protein family nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Predominantly expressed in flowers and siliques. {ECO:0000269|PubMed:16055682}. locus:6530298151; AT1G27045 Homeobox associated leucine zipper NA NA NA NA NA NA NA ENOG411EBUV CYCT1-3,CYCT1;3 Q8LBC0,A0A1P8AQQ8,A0A1P8AQH3 CCT13_ARATH,A0A1P8AQQ8_ARATH,A0A1P8AQH3_ARATH Cyclin-T1-3 (CycT1;3),Cyclin T 13 R-ATH-674695;R-ATH-6796648; 36762,26750,32259 Cyclin-T1-3 (CycT1;3),Cyclin T 13 cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; nucleus [GO:0005634]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; cell cycle [GO:0007049]; cell division [GO:0051301]; positive regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0045737]; positive regulation of phosphorylation of RNA polymerase II C-terminal domain [GO:1901409]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944] TISSUE SPECIFICITY: Abundantly expressed in flowers. Expressed in roots, seedlings, rosettes and stems. {ECO:0000269|PubMed:12678503}. locus:2196919; AT1G27630 cyclin T 1 NA NA NA NA NA NA NA ENOG411EBUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os01g0160600 protein A0A0N7KCD6 A0A0N7KCD6_ORYSJ Os01g0160600 OSNPB_010160600 ENOG411EBUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411EBUU AAP2,AAP4 Q38967,Q9FN04 AAP2_ARATH,AAP4_ARATH Amino acid permease 2 (Amino acid transporter AAP2),Amino acid permease 4 (Amino acid transporter AAP4) FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue. {ECO:0000269|PubMed:7608199, ECO:0000269|PubMed:8281191}.,FUNCTION: Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. {ECO:0000269|PubMed:7608199}. 54147,51429 Amino acid permease 2 (Amino acid transporter AAP2),Amino acid permease 4 (Amino acid transporter AAP4) integral component of plasma membrane [GO:0005887]; symporter activity [GO:0015293]; acidic amino acid transport [GO:0015800]; neutral amino acid transport [GO:0015804],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; acidic amino acid transmembrane transporter activity [GO:0015172]; neutral amino acid transmembrane transporter activity [GO:0015175]; primary active transmembrane transporter activity [GO:0015399]; symporter activity [GO:0015293]; amino acid transport [GO:0006865] DEVELOPMENTAL STAGE: Strongly induced at heart stage of embryogenesis. {ECO:0000269|PubMed:9675899}.,DEVELOPMENTAL STAGE: High expression in source leaves, but almost undetected in sink leaves. {ECO:0000269|PubMed:7608199}. TISSUE SPECIFICITY: Highly expressed in developing pods. Found in the vascular strands of siliques, cotyledons, leaves and roots, in the inner phloem of stems, and in the funiculi. Lower levels of expression in flowers. Not expressed in seeds. {ECO:0000269|PubMed:7608199, ECO:0000269|PubMed:8281191, ECO:0000269|PubMed:9675899}.,TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. {ECO:0000269|PubMed:7608199}. locus:2184707;,locus:2163981; AT5G09220,AT5G63850 Transmembrane amino acid transporter protein NA NA NA NA NA NA NA ENOG411EBUJ ATL53,ATL4H P0C041,A0A1P8B8Z6 ATL53_ARATH,A0A1P8B8Z6_ARATH Putative RING-H2 finger protein ATL53 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL53),RING/U-box superfamily protein PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34427,37415 Putative RING-H2 finger protein ATL53 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL53),RING/U-box superfamily protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],integral component of membrane [GO:0016021] locus:4515103413; AT4G17905 Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EBUK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_TTF Os09g0290900 protein (Fragment),Os09g0356100 protein A0A0P0XKD7,A0A0P0XM16 A0A0P0XKD7_ORYSJ,A0A0P0XM16_ORYSJ Os09g0290900 OSNPB_090290900,Os09g0356100 OSNPB_090356100 ENOG411EBUH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAS fold Phototropin-2 (EC 2.7.11.1) (Non-phototropic hypocotyl protein 1B) (OsNPH1B),Nonphototrophic hypocotyl 1b-like protein (Os07g0125400 protein) (Os07g0126200 protein) (Os07g0127000 protein),Os04g0304200 protein (Fragment) Q9ST27,Q84K27,A0A0P0W8S4 PHOT2_ORYSJ,Q84K27_ORYSJ,A0A0P0W8S4_ORYSJ PHOT2 Os04g0304200 LOC_Os04g23890 OSJNBa0079M09.13,P0474G09.127 Os07g0125400 Os07g0126200 Os07g0127000 P0474G09.140 P0474G09.153 B1249D05.8 OJ1212_C12.17 OJ1212_C12.29 OJ1212_C12.4 OsJ_22952 OSNPB_070125400 OSNPB_070126200 OSNPB_070127000,Os04g0304200 OSNPB_040304200 FUNCTION: Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion (By similarity). {ECO:0000250}. MISCELLANEOUS: Undergoes a photocycle characterized by fluorescence and absorption changes induced by blue light. ENOG411EBUI pentatricopeptide repeat 1 Q0WKZ3,Q9SI78,A0A1P8AN74 PP105_ARATH,PPR93_ARATH,A0A1P8AN74_ARATH Pentatricopeptide repeat-containing protein At1g64580,Pentatricopeptide repeat-containing protein At1g62720,Pentatricopeptide repeat (PPR) superfamily protein 59566,55171,44118 Pentatricopeptide repeat-containing protein At1g64580,Pentatricopeptide repeat-containing protein At1g62720,Pentatricopeptide repeat (PPR) superfamily protein mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397],mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397]; seed germination [GO:0009845] locus:2019454;,locus:2026172; AT1G64580,AT1G62720 PPR repeat NA NA NA NA NA NA NA ENOG411EBUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1664) NA NA NA NA NA NA NA ENOG411EBUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:efhand Calcium-dependent protein kinase 17 (OsCDPK17) (OsCPK17) (EC 2.7.11.1),Calcium-dependent protein kinase 10 (OsCDPK10) (OsCPK10) (EC 2.7.11.1) Q7XIM0,Q6F3A6 CDPKH_ORYSJ,CDPKA_ORYSJ CPK17 Os07g0161600 LOC_Os07g06740 OJ1714_H10.135,CPK10 Os03g0788500 LOC_Os03g57450 OSJNBb0024J04.20 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. ENOG411EBUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os07g0120600 protein (Os07g0120650 protein),Os07g0119800 protein A3BG40,Q8LHY4 A3BG40_ORYSJ,Q8LHY4_ORYSJ Os07g0120650 Os07g0120600 OsJ_22916 OSNPB_070120650,P0022B05.116 Os07g0119800 OsJ_22908 OSNPB_070119800 ENOG411EBUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Diacylglycerol kinase accessory domain NA NA NA NA NA NA NA ENOG411EBUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin domain NA NA NA NA NA NA NA ENOG411EBUG RBOHH,RBOHJ Q9FJD6,Q9LZU9 RBOHH_ARATH,RBOHJ_ARATH Putative respiratory burst oxidase homolog protein H (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHH) (AtRBOHH),Putative respiratory burst oxidase homolog protein J (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHJ) (AtRBOHJ) FUNCTION: Calcium-dependent NADPH oxidase that generates superoxide. ARA:AT5G60010-MONOMER;,ARA:AT3G45810-MONOMER; R-ATH-3299685;R-ATH-6798695; 1.11.1.-; 1.6.3.- 100628,102937 Putative respiratory burst oxidase homolog protein H (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHH) (AtRBOHH),Putative respiratory burst oxidase homolog protein J (EC 1.11.1.-) (EC 1.6.3.-) (NADPH oxidase RBOHJ) (AtRBOHJ) integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor [GO:0050664]; peroxidase activity [GO:0004601],integral component of membrane [GO:0016021]; membrane [GO:0016020]; calcium ion binding [GO:0005509]; oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor [GO:0050664]; peroxidase activity [GO:0004601] locus:2168113;,locus:2077192; AT5G60010,AT3G45810 Respiratory burst NADPH oxidase NA NA NA NA NA NA NA ENOG411EBUD DOR Q5BPS3,A0A1P8AYW0 DOR_ARATH,A0A1P8AYW0_ARATH F-box protein DOR (Protein DROUGHT TOLERANCE REPRESSOR),F-box and associated interaction domains-containing protein DISRUPTION PHENOTYPE: Hypersensitive ABA response of stomatal closing and substantial increase of drought tolerance. {ECO:0000269|PubMed:18835996}. FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Negative regulator of guard cell abscisic acid (ABA) signaling, especially during drought stress. {ECO:0000250, ECO:0000269|PubMed:18835996}. PATHWAY: Protein modification; protein ubiquitination. 44770,29772 F-box protein DOR (Protein DROUGHT TOLERANCE REPRESSOR),F-box and associated interaction domains-containing protein abscisic acid-activated signaling pathway [GO:0009738]; cellular response to water deprivation [GO:0042631]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; protein ubiquitination [GO:0016567]; regulation of stomatal movement [GO:0010119]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; stomatal movement [GO:0010118] TISSUE SPECIFICITY: Strongly expressed in guard cells. Mostly represented in seedlings, leaves and flowers, and, to a lower extent, in roots and siliques. {ECO:0000269|PubMed:18835996}. locus:2061325; AT2G31470 F-box protein NA NA NA NA NA NA NA ENOG411EBUE MUB3.22 Q9FGG4 Q9FGG4_ARATH At5g64690 (Neurofilament triplet H protein-like protein) (Uncharacterized protein At5g64690) 38144 At5g64690 (Neurofilament triplet H protein-like protein) (Uncharacterized protein At5g64690) locus:2174839; AT5G64690 neurofilament triplet H NA NA NA NA NA NA NA ENOG411EDNC Q9ZPZ8 Q9ZPZ8_ARATH Homeodomain-like superfamily protein (Uncharacterized protein At2g06020) 33819 Homeodomain-like superfamily protein (Uncharacterized protein At2g06020) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2051572; AT2G06020 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411DTJ6 Q9SA55,F4HWZ0 Q9SA55_ARATH,F4HWZ0_ARATH F10O3.3 protein (Splicing factor Prp18 family protein) (Uncharacterized protein At1g03140),Pre-mRNA-splicing factor-like protein 47881,42001 F10O3.3 protein (Splicing factor Prp18 family protein) (Uncharacterized protein At1g03140),Pre-mRNA-splicing factor-like protein U2-type post-spliceosomal complex [GO:0071021]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; generation of catalytic spliceosome for second transesterification step [GO:0000350]; nuclear retention of unspliced pre-mRNA at the site of transcription [GO:0071048] locus:2007589;,locus:2199476; AT1G03140,AT1G54590 pre-mRNA-splicing factor Os07g0571900 protein (Putative potassium channel regulatory factor) (cDNA clone:J033051L15, full insert sequence),Os03g0701100 protein (Fragment) Q6YTU8,A0A0P0W2I9,A0A0N7KHW2 Q6YTU8_ORYSJ,A0A0P0W2I9_ORYSJ,A0A0N7KHW2_ORYSJ Os07g0571900 Os07g0571900 OJ1121_A05.19 OSNPB_070571900,Os03g0701100 OSNPB_030701100 ENOG411DTJ7 DJA7 Q0WN54,A0A1P8ART2 Q0WN54_ARATH,A0A1P8ART2_ARATH Molecular chaperone Hsp40/DnaJ family protein (Uncharacterized protein At1g80030),Molecular chaperone Hsp40/DnaJ family protein 53820,52282 Molecular chaperone Hsp40/DnaJ family protein (Uncharacterized protein At1g80030),Molecular chaperone Hsp40/DnaJ family protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to heat [GO:0009408],ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to heat [GO:0009408] locus:2016234; AT1G80030 chaperone protein NA NA NA NA NA NA NA ENOG411DTJ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein WAT1-related protein Q10RR0 Q10RR0_ORYSJ Os03g0149300 LOC_Os03g05530 OsJ_09421 OSNPB_030149300 ENOG411DTJ5 Q8GYT1 Q8GYT1_ARATH OBP33pep like protein (Putative OBP33pep protein) (tRNA/rRNA methyltransferase (SpoU) family protein) 24458 OBP33pep like protein (Putative OBP33pep protein) (tRNA/rRNA methyltransferase (SpoU) family protein) RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; RNA processing [GO:0006396] locus:2130310; AT4G15520 tRNA rRNA methyltransferase Os05g0141400 protein (Putative OBP33PEP) (cDNA clone:002-118-E02, full insert sequence) (cDNA clone:J023090K18, full insert sequence) Q75KG9 Q75KG9_ORYSJ Os05g0141400 Os05g0141400 OJ1489_G03.7 OsJ_17068 OSNPB_050141400 ENOG411DTJ2 ECT3 Q9FNR2,F4K1Z0 Q9FNR2_ARATH,F4K1Z0_ARATH Evolutionarily conserved C-terminal region 3 (Similarity to unknown protein) (Uncharacterized protein At5g61020),Evolutionarily conserved C-terminal region 3 54984,55226 Evolutionarily conserved C-terminal region 3 (Similarity to unknown protein) (Uncharacterized protein At5g61020),Evolutionarily conserved C-terminal region 3 RNA binding [GO:0003723] locus:2159391; AT5G61020 YT521-B-like domain NA NA NA NA NA NA NA ENOG411DTJ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Kelch domain containing NA NA NA NA NA NA NA ENOG411DTJ0 SIGE Q9ZNX9 SIGE_ARATH RNA polymerase sigma factor sigE, chloroplastic/mitochondrial (Sigma factor E) (Sigma-E) (RNA polymerase sigma factor sig5) (Atsig5) (Sigma factor 5) DISRUPTION PHENOTYPE: Lethal. In heterozygous plants, aborted embryos and unfertilized ovules. Defects in female gametophyte development at the one-nucleate stage and white shriveled ovule (PubMed:12805603, PubMed:14976253, PubMed:21123745). Loss of transcription activation of psbD in chloroplasts in response to light (PubMed:12805603, PubMed:14976253). {ECO:0000269|PubMed:12805603, ECO:0000269|PubMed:14976253, ECO:0000269|PubMed:21123745}. Under FRc conditions the length mutant hypocotyls is decreased compared to that of wild-type plants. Under Rc conditions the hypocotyl length is decreased and the cotyledon area is smaller than that of wild type. FUNCTION: Essential protein. Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites (e.g. psbA and psbD) and are then released. Essential for blue light-mediated transcription of psbD, which encodes the photosystem II reaction center protein D2. Plays a role in reproduction. Required during female gametophyte development (PubMed:21123745). {ECO:0000269|PubMed:12805603, ECO:0000269|PubMed:14976253, ECO:0000269|PubMed:18532976, ECO:0000269|PubMed:21123745}. 58813 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial (Sigma factor E) (Sigma-E) (RNA polymerase sigma factor sig5) (Atsig5) (Sigma factor 5) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; DNA binding [GO:0003677]; plastid sigma factor activity [GO:0001053]; sigma factor activity [GO:0016987]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to blue light [GO:0071483]; chloroplast organization [GO:0009658]; DNA-templated transcription, initiation [GO:0006352]; embryo sac development [GO:0009553]; photosystem II assembly [GO:0010207]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of RNA biosynthetic process [GO:2001141]; response to far red light [GO:0010218]; response to red light [GO:0010114] DEVELOPMENTAL STAGE: Highly expressed in the male and female gametophytes and in seedlings. {ECO:0000269|PubMed:21123745}. TISSUE SPECIFICITY: Mostly expressed in siliques and flowers, to a lesser extent in leaves and stems, and barely expressed in roots (at protein level). Isoform 2 accumulates specifically in flowers, whereas isoform 1 is expressed in both leaves and flowers. Present in old seedlings (8 days). {ECO:0000269|PubMed:10946105, ECO:0000269|PubMed:12805603, ECO:0000269|PubMed:14976253, ECO:0000269|PubMed:15807777}. locus:2167413; AT5G24120 RNA polymerase sigma factor Os05g0586600 protein (Fragment) A0A0P0WQU9 A0A0P0WQU9_ORYSJ Os05g0586600 OSNPB_050586600 ENOG411DTJI TRM34 Q9LJ43 Q9LJ43_ARATH Uncharacterized protein 81075 Uncharacterized protein locus:2093156; AT3G24630 NA NA NA NA NA NA NA NA ENOG411DTJF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0129800 protein,Os09g0129600 protein (Fragment) Q6ERA9,A0A0P0XKA3 Q6ERA9_ORYSJ,A0A0P0XKA3_ORYSJ P0448B11.33 Os09g0129800 OSNPB_090129800,Os09g0129600 OSNPB_090129600 ENOG411DTJG PCMP-E40 Q9LXF2 PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 62112 Pentatricopeptide repeat-containing protein At5g15300 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2150996; AT5G15300 Pentatricopeptide repeat-containing protein Os03g0168550 protein (Putative pentatricopeptide repeat containing protein) Q8S7U9 Q8S7U9_ORYSJ OSJNBa0091P11.28 Os03g0168550 OSNPB_030168550 ENOG411DTJE MPF21.1 Q9SSA4,Q9FGB1,A0A178VCD6,A0A1P8BAW5 Q9SSA4_ARATH,Q9FGB1_ARATH,A0A178VCD6_ARATH,A0A1P8BAW5_ARATH AT3g01490/F4P13_4 (Protein kinase like protein) (Protein kinase superfamily protein) (Uncharacterized protein At3g01490) (Uncharacterized protein F4P13.4),Protein kinase (Protein kinase superfamily protein),Protein kinase superfamily protein 46049,42729,40037,36613 AT3g01490/F4P13_4 (Protein kinase like protein) (Protein kinase superfamily protein) (Uncharacterized protein At3g01490) (Uncharacterized protein F4P13.4),Protein kinase (Protein kinase superfamily protein),Protein kinase superfamily protein intracellular [GO:0005622]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],intracellular [GO:0005622]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2084193;,locus:2170106; AT3G01490,AT5G50000 serine threonine-protein kinase HT1-like Os01g0641000 protein (Protein kinase 6-like),Os03g0638800 protein (Protein kinase, putative, expressed) (cDNA, clone: J100090O16, full insert sequence),Os05g0577700 protein,Os12g0605900 protein (Protein kinase, putative, expressed) (cDNA clone:002-145-F01, full insert sequence) Q8LQ53,Q75J49,Q6L5F3,Q2QMG1 Q8LQ53_ORYSJ,Q75J49_ORYSJ,Q6L5F3_ORYSJ,Q2QMG1_ORYSJ Os01g0641000 OSNPB_010641000 P0039G05.14,Os03g0638800 OSJNBb0029I19.9 LOC_Os03g43760 OSJNBa0066H15.2 OSNPB_030638800,Os05g0577700 OJ1126_B10.9 OsJ_25620 OSNPB_050577700,LOC_Os12g41260 Os12g0605900 OsJ_36795 OSNPB_120605900 ENOG411DTJB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF724) Expressed protein (Os11g0552100 protein) (cDNA clone:J033129P09, full insert sequence),Os11g0552100 protein Q2R2Q1,A0A0P0Y3M8 Q2R2Q1_ORYSJ,A0A0P0Y3M8_ORYSJ Os11g0552100 LOC_Os11g35050 Os11g0552100 OSNPB_110552100,Os11g0552100 OSNPB_110552100 ENOG411DTJV Q0WPG7,A0A1P8ARI2 Q0WPG7_ARATH,A0A1P8ARI2_ARATH At1g55915 (Uncharacterized protein At1g55915) (Zinc ion binding protein),Zinc ion binding protein 44971,51156 At1g55915 (Uncharacterized protein At1g55915) (Zinc ion binding protein),Zinc ion binding protein metal ion binding [GO:0046872] locus:505006190; AT1G55915 zinc ion binding protein Os06g0191200 protein (cDNA clone:J033026I12, full insert sequence) Q69TJ9 Q69TJ9_ORYSJ Os06g0191200 OsJ_20413 OSJNBa0090D06.36 OSNPB_060191200 ENOG411DTJW RAPTOR1,RAPTOR2 Q93YQ1,Q9LZW9,A0A1P8BAR8,A0A1P8BAT3,A0A1P8BAT5,A0A1P8BAS5 RTOR1_ARATH,RTOR2_ARATH,A0A1P8BAR8_ARATH,A0A1P8BAT3_ARATH,A0A1P8BAT5_ARATH,A0A1P8BAS5_ARATH Regulatory-associated protein of TOR 1 (Protein RAPTOR 1) (Protein RAPTOR 1B) (AtRaptor1b),Regulatory-associated protein of TOR 2 (Protein RAPTOR 1A) (AtRaptor1a) (Protein RAPTOR 2),Regulatory-associated protein of TOR 2 (RAPTOR2) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. Embryo development arrested at very early stage (early pre-globular stage), leading to aborted shrunken seeds. {ECO:0000269|PubMed:15607746, ECO:0000269|PubMed:15845148}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. {ECO:0000269|PubMed:15607746, ECO:0000269|PubMed:15845148}. Heterozygotes show no obvious growth phenotype. Homozygotes are embryo lethal with a very early arrest of embryo development in the pre-globular stage of development.,Under non-limiting conditions of light water and mineral nutrition the growth and development of these plants is unaffected when compared to wild-type Col8 plnats. No signs of seed abortion are detected in the siliques of heterozygous or homozygous plants. Embryo defective; Preglobular-C. Meyer-2005 FUNCTION: Probable component of the plant TOR kinase pathway that recruits substrates for TOR. Modulates plant cell growth and regulates the activity of ATPK1 kinase in response to osmotic stress. {ECO:0000269|PubMed:16377759}.,FUNCTION: Probable component of the plant TOR kinase pathway. {ECO:0000250}. R-ATH-3371571; 147963,147640,146885,147265,132052,147120 Regulatory-associated protein of TOR 1 (Protein RAPTOR 1) (Protein RAPTOR 1B) (AtRaptor1b),Regulatory-associated protein of TOR 2 (Protein RAPTOR 1A) (AtRaptor1a) (Protein RAPTOR 2),Regulatory-associated protein of TOR 2 (RAPTOR2) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; TORC1 complex [GO:0031931]; protein binding, bridging [GO:0030674]; cell growth [GO:0016049]; cellular response to amino acid stimulus [GO:0071230]; cellular response to starvation [GO:0009267]; embryo development ending in seed dormancy [GO:0009793]; positive regulation of cell growth [GO:0030307]; positive regulation of protein serine/threonine kinase activity [GO:0071902]; regulation of autophagy [GO:0010506]; regulation of cell size [GO:0008361]; TOR signaling [GO:0031929],Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cytoplasm [GO:0005737]; TORC1 complex [GO:0031931]; protein binding, bridging [GO:0030674]; cell growth [GO:0016049]; cellular response to amino acid stimulus [GO:0071230]; cellular response to starvation [GO:0009267]; positive regulation of cell growth [GO:0030307]; positive regulation of protein serine/threonine kinase activity [GO:0071902]; regulation of autophagy [GO:0010506]; regulation of cell size [GO:0008361]; TOR signaling [GO:0031929],TORC1 complex [GO:0031931]; TOR signaling [GO:0031929] TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and seeds. {ECO:0000269|PubMed:15607746}.,TISSUE SPECIFICITY: Expressed at low levels in roots, leaves, flowers and seeds. {ECO:0000269|PubMed:15607746}. locus:2097633;,locus:2180997; AT3G08850,AT5G01770 Regulatory-associated protein of Regulatory-associated protein of TOR 1 (Protein RAPTOR 1) (OsRAPTOR1),Regulatory-associated protein of TOR 2 (Protein RAPTOR 2) (OsRAPTOR2),Os12g0110000 protein (Fragment),Os11g0109933 protein (Fragment) Q0IQN5,C7J8E5,A0A0P0Y607,A0A0P0XYC8 RTOR1_ORYSJ,RTOR2_ORYSJ,A0A0P0Y607_ORYSJ,A0A0P0XYC8_ORYSJ RAPTOR1 Os12g0110000 LOC_Os12g01922,RAPTOR2 Os11g0109933 LOC_Os11g01872,Os12g0110000 OSNPB_120110000,Os11g0109933 OSNPB_110109933 FUNCTION: Probable component of the plant TOR kinase pathway. {ECO:0000250}. ENOG411DTJT MUL3.4,MYN21.6 Q9FG70,Q9LU76,A0A1R7T3B1,A0A1P8BHP7,A0A1P8BH42,A0A1P8BH28,A0A1R7T3B2,A0A1P8BH41 NSTU2_ARATH,NSTU1_ARATH,A0A1R7T3B1_ARATH,A0A1P8BHP7_ARATH,A0A1P8BH42_ARATH,A0A1P8BH28_ARATH,A0A1R7T3B2_ARATH,A0A1P8BH41_ARATH Nucleotide-sugar uncharacterized transporter 2,Nucleotide-sugar uncharacterized transporter 1,Nucleotide/sugar transporter family protein 42644,43150,30004,30861,36023,33934,33355,34105 Nucleotide-sugar uncharacterized transporter 2,Nucleotide-sugar uncharacterized transporter 1,Nucleotide/sugar transporter family protein integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] locus:2178373;,locus:2175569; AT5G55950,AT5G57100 Triose-phosphate Transporter family Os02g0724500 protein,Os06g0297600 protein A0A0N7KG06,A0A0N7KLZ0 A0A0N7KG06_ORYSJ,A0A0N7KLZ0_ORYSJ Os02g0724500 OSNPB_020724500,Os06g0297600 OSNPB_060297600 ENOG411DTJU CYP734A1 O48786 C734A_ARATH Cytochrome P450 734A1 (EC 1.14.-.-) (Protein PHYB ACTIVATION-TAGGED SUPPRESSOR 1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but reduced responsiveness of hypocotyls to light and increased responsiveness to brassinolide. Strong reduction of C-26 hydroxylase activity. {ECO:0000269|PubMed:14605216, ECO:0000269|PubMed:15773851}. Double mutant of BAS1 and SOB both of which are null alleles. Less responsive to light as measured by hypocotyl elongation and enhanced cotyledon expansion in red blue and far red light meaning they are less responsive. Early flowering. Increased levels of 6-deoxotyphasterol and cataseterone which are products of the brassiolide pathway. Tall inflorescence stems; Short hypocotyl under a variety of light conditions-M. Neff-2003 FUNCTION: Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis. Inactivates the BRs castasterone and brassinolide through carbon 26 hydroxylation. Acts in association with CYP72C1 to inactivate BRs and modulate photomorphogenesis. {ECO:0000269|PubMed:10611382, ECO:0000269|PubMed:14605216, ECO:0000269|PubMed:15773851, ECO:0000269|PubMed:20396969, ECO:0000269|PubMed:20669042}. MISCELLANEOUS: Plants overexpressing CYP734A1 exhibit severe dwarfism. 1.14.-.- 59490 Cytochrome P450 734A1 (EC 1.14.-.-) (Protein PHYB ACTIVATION-TAGGED SUPPRESSOR 1) integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; steroid hydroxylase activity [GO:0008395]; brassinosteroid homeostasis [GO:0010268]; brassinosteroid metabolic process [GO:0016131]; regulation of growth [GO:0040008]; response to brassinosteroid [GO:0009741] locus:2043823; AT2G26710 cytochrome P450 Cytochrome P450 734A6 (EC 1.14.-.-),Os01g0388101 protein,Os01g0388000 protein B9X287,A0A0P0V359,A0A0P0V380 C7346_ORYSJ,A0A0P0V359_ORYSJ,A0A0P0V380_ORYSJ CYP734A6 Os01g0388000 LOC_Os01g29150 OSJNBb0008D07.26,Os01g0388101 OSNPB_010388101,Os01g0388000 OSNPB_010388000 FUNCTION: Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis. Is a multifunctional and multisubstrate enzyme that controls the endogenous bioactive BR content both by direct inactivation of castasterone and by decreasing the levels of BR precursors. Catalyzes the oxidation of carbon 22 hydroxylated BR intermediates to produce C26 oxidized metabolites. {ECO:0000269|PubMed:21418356}. MISCELLANEOUS: Plants overexpressing CYP734A6 show a dwarf phenotype, characterized by abnormal leaves with stiff, tortuous blades, undeveloped leaf sheaths, no flowering and bear seeds. Over-expression of CYP734A6 causes an important reduction of the levels of the BRs castasterone, 6-deoxocastasterone and 6-deoxotyphasterol. ENOG411DTJR MAE1.6 Q9FJH4,Q8GYG0,A0A1P8BBM7 Q9FJH4_ARATH,Q8GYG0_ARATH,A0A1P8BBM7_ARATH RING/U-box superfamily protein (Similarity to ring finger protein),RING/U-box superfamily protein (Uncharacterized protein At5g08139) (Uncharacterized protein At5g08139/At5g08140),RING/U-box superfamily protein R-ATH-983168; 47704,41964,31362 RING/U-box superfamily protein (Similarity to ring finger protein),RING/U-box superfamily protein (Uncharacterized protein At5g08139) (Uncharacterized protein At5g08139/At5g08140),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2159320;,locus:1005716857; AT5G60820,AT5G08139 zinc finger NA NA NA NA NA NA NA ENOG411DZBQ PAP7,MYH9.3 Q5M755,A0A1P8B9Y9,F4KFC4 PAP7_ARATH,A0A1P8B9Y9_ARATH,F4KFC4_ARATH Probable plastid-lipid-associated protein 7, chloroplastic (Fibrillin-5),Plastid-lipid associated protein PAP / fibrillin family protein 30531,26583,29046 Probable plastid-lipid-associated protein 7, chloroplastic (Fibrillin-5),Plastid-lipid associated protein PAP / fibrillin family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastoquinone biosynthetic process [GO:0010236] locus:2178133; AT5G09820 plastid-lipid-associated protein 7 Os04g0422000 protein (cDNA clone:001-010-B06, full insert sequence) (cDNA clone:J023056J12, full insert sequence),Os04g0422000 protein Q0JD85,A0A0N7KJ21 Q0JD85_ORYSJ,A0A0N7KJ21_ORYSJ Os04g0422000 Os04g0422000 OSNPB_040422000,Os04g0422000 OSNPB_040422000 ENOG411DZBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Early fruit mRNA Os01g0179300 protein (Putative BRI1-KD interacting protein 128),Os02g0208650 protein (Fragment),Os05g0179800 protein (Fragment) Q5VRC9,A0A0N7KEW8,A0A0P0WIM9 Q5VRC9_ORYSJ,A0A0N7KEW8_ORYSJ,A0A0P0WIM9_ORYSJ Os01g0179300 OsJ_00610 OSNPB_010179300 P0406H10.18 P0509B06.20,Os02g0208650 OSNPB_020208650,Os05g0179800 OSNPB_050179800 ENOG411DZBW VHA-B2,VHA-B1,VHA-B3,VAB2 Q9SZN1,P11574,Q8W4E2,F4JTQ0 VATB2_ARATH,VATB1_ARATH,VATB3_ARATH,F4JTQ0_ARATH V-type proton ATPase subunit B2 (V-ATPase subunit B2) (Vacuolar H(+)-ATPase subunit B isoform 2) (Vacuolar proton pump subunit B2),V-type proton ATPase subunit B1 (V-ATPase subunit B1) (V-ATPase 57 kDa subunit) (Vacuolar H(+)-ATPase subunit B isoform 1) (Vacuolar proton pump subunit B1),V-type proton ATPase subunit B3 (V-ATPase subunit B3) (Vacuolar H(+)-ATPase subunit B isoform 3) (Vacuolar proton pump subunit B3),ATPase, V1 complex, subunit B protein Insensitive to high-glucose repression of cotyledon expansion chlorophyll accumulation true-leaf development and root elongation. The response is specific to glucose but not to osmotic changes. Insensitive to glucose-J. Sheen-2006 FUNCTION: Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. ARA:AT4G38510-MONOMER;,ARA:AT1G76030-MONOMER;,ARA:AT1G20260-MONOMER; R-ATH-1222556;R-ATH-77387;R-ATH-917977; 54305,54108,54312,55178 V-type proton ATPase subunit B2 (V-ATPase subunit B2) (Vacuolar H(+)-ATPase subunit B isoform 2) (Vacuolar proton pump subunit B2),V-type proton ATPase subunit B1 (V-ATPase subunit B1) (V-ATPase 57 kDa subunit) (Vacuolar H(+)-ATPase subunit B isoform 1) (Vacuolar proton pump subunit B1),V-type proton ATPase subunit B3 (V-ATPase subunit B3) (Vacuolar H(+)-ATPase subunit B isoform 3) (Vacuolar proton pump subunit B3),ATPase, V1 complex, subunit B protein proton-transporting V-type ATPase, V1 domain [GO:0033180]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO:0016820]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP metabolic process [GO:0046034],chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; proton-transporting V-type ATPase, V1 domain [GO:0033180]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; actin filament binding [GO:0051015]; ATP binding [GO:0005524]; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO:0016820]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP metabolic process [GO:0046034]; glucose mediated signaling pathway [GO:0010255]; negative regulation of actin filament depolymerization [GO:0030835]; response to cadmium ion [GO:0046686],chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; proton-transporting V-type ATPase, V1 domain [GO:0033180]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; actin filament binding [GO:0051015]; ATP binding [GO:0005524]; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO:0016820]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP metabolic process [GO:0046034]; negative regulation of actin filament depolymerization [GO:0030835],chloroplast envelope [GO:0009941]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; proton-transporting V-type ATPase, V1 domain [GO:0033180]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; actin filament binding [GO:0051015]; ATP binding [GO:0005524]; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO:0016820]; actin filament bundle assembly [GO:0051017]; actin filament capping [GO:0051693]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP metabolic process [GO:0046034]; negative regulation of actin filament depolymerization [GO:0030835] locus:2204430;,locus:2012913;,locus:2121209; AT4G38510,AT1G76030,AT1G20260 V-type proton ATPase subunit Os06g0568200 protein (Vacuolar ATPase B subunit) (cDNA clone:J013000D11, full insert sequence) (cDNA clone:J013116A19, full insert sequence),Os01g0711000 protein (Putative vacuolar ATPase B subunit),Os06g0568200 protein (Fragment) Q93W07,Q9ASE0,A0A0P0WXV2 Q93W07_ORYSJ,Q9ASE0_ORYSJ,A0A0P0WXV2_ORYSJ V-ATPase B Os06g0568200 OSJNBa0062E01.5 OSNPB_060568200 P0567G03.43,Os01g0711000 Os01g0711000 B1142C05.1 OsJ_03215 OSNPB_010711000 P0456F08.26,Os06g0568200 OSNPB_060568200 ENOG411DZBJ MWJ3.2 Q9LVQ5,A0A1P8BDC0 PP432_ARATH,A0A1P8BDC0_ARATH Pentatricopeptide repeat-containing protein At5g55840,PPR superfamily protein 122499,126665 Pentatricopeptide repeat-containing protein At5g55840,PPR superfamily protein intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] AT5G55840 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411ECG2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411ECG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411ECGH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411ECGZ KAT5 Q570C8 THIK5_ARATH 3-ketoacyl-CoA thiolase 5, peroxisomal (EC 2.3.1.16) (Acetyl-CoA acyltransferase 5) (Beta-ketothiolase 5) (Peroxisomal 3-oxoacyl-CoA thiolase 5) FUNCTION: Probably involved in long chain fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth. Involved in systemic jasmonic acid (JA) biosynthesis after wounding and may be during senescence. {ECO:0000269|PubMed:11696182, ECO:0000269|PubMed:15141068}. PATHWAY: Lipid metabolism; fatty acid metabolism. ARA:AT5G48880-MONOMER; R-ATH-2046106;R-ATH-390247;R-ATH-6798695; 2.3.1.16 47956 3-ketoacyl-CoA thiolase 5, peroxisomal (EC 2.3.1.16) (Acetyl-CoA acyltransferase 5) (Beta-ketothiolase 5) (Peroxisomal 3-oxoacyl-CoA thiolase 5) peroxisome [GO:0005777]; acetyl-CoA C-acyltransferase activity [GO:0003988]; oxylipin biosynthetic process [GO:0031408] DEVELOPMENTAL STAGE: Slightly induced in leaves during senescence. {ECO:0000269|PubMed:11891244}. TISSUE SPECIFICITY: Expressed in seedlings and wounded leaves. {ECO:0000269|PubMed:11696182, ECO:0000269|PubMed:15141068}. locus:2156514; AT5G48880 peroxisomal 3-keto-acyl-CoA thiolase NA NA NA NA NA NA NA ENOG411ECGV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF 659) NA NA NA NA NA NA NA ENOG411E2N0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os05g0530701 protein (Putative leucine-rich repeat protein),Os01g0729400 protein Q6I5I5,Q0JJN0 Q6I5I5_ORYSJ,Q0JJN0_ORYSJ Os05g0530701 Os05g0530701 OsJ_19307 OSJNBa0053E05.1 OSNPB_050530701,Os01g0729400 Os01g0729400 OsJ_03337 OSNPB_010729400 ENOG411E0JT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411E0JW O22892,F4IH36,F4IH34 NOP53_ARATH,F4IH36_ARATH,F4IH34_ARATH Ribosome biogenesis protein NOP53,Nop53 protein FUNCTION: May play a role in ribosome biogenesis. {ECO:0000250|UniProtKB:Q9NZM5}.,FUNCTION: May play a role in ribosome biogenesis. {ECO:0000256|PIRNR:PIRNR017302}. 50162,50911,33601 Ribosome biogenesis protein NOP53,Nop53 protein nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; rRNA binding [GO:0019843]; ribosomal large subunit assembly [GO:0000027]; ribosomal large subunit export from nucleus [GO:0000055],nucleus [GO:0005634]; positive regulation of cell division [GO:0051781]; positive regulation of G2/M transition of mitotic cell cycle [GO:0010971] locus:2061898; AT2G40430 Nop53 (60S ribosomal biogenesis) Ribosome biogenesis protein NOP53 B7F9E7 B7F9E7_ORYSJ Os05g0144200 OSNPB_050144200 FUNCTION: May play a role in ribosome biogenesis. {ECO:0000256|PIRNR:PIRNR017302}. ENOG411E0JX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nodulin-like NA NA NA NA NA NA NA ENOG411E0JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411E0JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA amino acid Os02g0722400 protein (Fragment) Q0DY08 Q0DY08_ORYSJ Os02g0722400 Os02g0722400 OSNPB_020722400 ENOG411E0JF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA oligopeptide transporter Os02g0695900 protein (Sexual differentiation process protein isp4-like) (cDNA clone:001-108-G05, full insert sequence) Q6YUP8 Q6YUP8_ORYSJ B1053A04.20-2 Os02g0695900 OSNPB_020695900 ENOG411E0JI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0610800 protein (Fragment) A0A0P0V550 A0A0P0V550_ORYSJ Os01g0610800 OSNPB_010610800 ENOG411E0JH O80575 RISB_ARATH 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic (DMRL synthase) (LS) (Lumazine synthase) (EC 2.5.1.78) FUNCTION: Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (By similarity). {ECO:0000250}. PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 1/2. ARA:AT2G44050-MONOMER;MetaCyc:AT2G44050-MONOMER; 2.5.1.78; 2.5.1.78 24024 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic (DMRL synthase) (LS) (Lumazine synthase) (EC 2.5.1.78) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; riboflavin synthase complex [GO:0009349]; 6,7-dimethyl-8-ribityllumazine synthase activity [GO:0000906]; transferase activity [GO:0016740]; riboflavin biosynthetic process [GO:0009231] locus:2051739; AT2G44050 67-dimethyl-8-ribityllumazine synthase 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (EC 2.5.1.78) Q7XUK6 Q7XUK6_ORYSJ LS Os04g0497400 OSJNBa0067K08.17 OSNPB_040497400 FUNCTION: Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. {ECO:0000256|RuleBase:RU003795}. ENOG411E0JK PAF2,PAF1 O23712,P34066 PSA1B_ARATH,PSA1A_ARATH Proteasome subunit alpha type-1-B (EC 3.4.25.1) (20S proteasome alpha subunit F-2) (Proteasome component 2B) (Proteasome subunit alpha type-6),Proteasome subunit alpha type-1-A (EC 3.4.25.1) (20S proteasome alpha subunit F-1) (Proteasome 30 kDa subunit) (Proteasome component 2A) (AtPSM30) (Proteasome subunit alpha type-6) (Protein ARSENIC TOLERANCE 5) DISRUPTION PHENOTYPE: Do not show arsenic tolerance phenotype. {ECO:0000269|PubMed:19453443}.,DISRUPTION PHENOTYPE: Enhanced thiol accumulation and arsenic tolerance. Mutation can be complemented by overexpression of PAF2. {ECO:0000269|PubMed:19453443}. Increased arsenic tolerance Resistant to arsenic-J. Schroeder-2009 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. May play a role in thiol biosynthesis and arsenic tolerance in association with PAF1/ARS5. {ECO:0000269|PubMed:19453443}.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Negatively regulates thiol biosynthesis and arsenic tolerance. {ECO:0000269|PubMed:19453443}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 30410,30476 Proteasome subunit alpha type-1-B (EC 3.4.25.1) (20S proteasome alpha subunit F-2) (Proteasome component 2B) (Proteasome subunit alpha type-6),Proteasome subunit alpha type-1-A (EC 3.4.25.1) (20S proteasome alpha subunit F-1) (Proteasome 30 kDa subunit) (Proteasome component 2A) (AtPSM30) (Proteasome subunit alpha type-6) (Protein ARSENIC TOLERANCE 5) cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; ubiquitin-dependent protein catabolic process [GO:0006511],cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; proteasome core complex, alpha-subunit complex [GO:0019773]; threonine-type endopeptidase activity [GO:0004298]; protein catabolic process [GO:0030163]; response to arsenic-containing substance [GO:0046685]; ubiquitin-dependent protein catabolic process [GO:0006511] DEVELOPMENTAL STAGE: Levels decrease as seedling grow (9-day-old) but is high in 3-week-old plants. {ECO:0000269|PubMed:8264533}. locus:2036746;,locus:2165512; AT1G47250,AT5G42790 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity Proteasome subunit alpha type-1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit alpha-6) (Proteasome component C2) P52428 PSA1_ORYSJ PAF1 Os02g0133800 LOC_Os02g04100 OsJ_05275 P0030G11.18 P0585B01.3 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. ENOG411E0JM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain Os07g0646500 protein (Fragment),Os07g0646200 protein (Fragment),Os07g0646700 protein A0A0P0XA04,A0A0N7KNY4,A0A0N7KNY5 A0A0P0XA04_ORYSJ,A0A0N7KNY4_ORYSJ,A0A0N7KNY5_ORYSJ Os07g0646500 OSNPB_070646500,Os07g0646200 OSNPB_070646200,Os07g0646700 OSNPB_070646700 ENOG411E0JN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os05g0361000 protein,Os01g0227500 protein (Putative Cytochrome P450 71A1),Os01g0227700 protein (cDNA, clone: J075083L18, full insert sequence),Os01g0227400 protein (Fragment),Os01g0227800 protein Q0DIV1,Q5N7Z8,B7F956,Q0JPE3,A0A0P0V0F6 Q0DIV1_ORYSJ,Q5N7Z8_ORYSJ,B7F956_ORYSJ,Q0JPE3_ORYSJ,A0A0P0V0F6_ORYSJ Os05g0361000 Os05g0361000 OSNPB_050361000,Os01g0227500 Os01g0227500 OsJ_00963 OSNPB_010227500 P0452F10.11,Os01g0227700 OSNPB_010227700,Os01g0227400 Os01g0227400 OSNPB_010227400,Os01g0227800 OSNPB_010227800 ENOG411E0J1 DREB2F Q9SVX5 DRE2F_ARATH Dehydration-responsive element-binding protein 2F (Protein DREB2F) FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. 31572 Dehydration-responsive element-binding protein 2F (Protein DREB2F) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] locus:2076621; AT3G57600 dehydration-responsive element-binding protein Dehydration-responsive element-binding protein 2E (OsDREB2E) Q10R18 DRE2E_ORYSJ DREB2E ERF41 Os03g0174400 LOC_Os03g07830 FUNCTION: Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. ENOG411E0J0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0115800 protein (Fragment),Os04g0295500 protein (Fragment),Os04g0115650 protein Q0JFC9,A0A0P0W8Q8,A0A0P0W6K8 Q0JFC9_ORYSJ,A0A0P0W8Q8_ORYSJ,A0A0P0W6K8_ORYSJ Os04g0115800 Os04g0115800 OSNPB_040115800,Os04g0295500 OSNPB_040295500,Os04g0115650 OSNPB_040115650 ENOG411E0J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF640) NA NA NA NA NA NA NA ENOG411E0J2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ClpB_D2-small Os02g0297132 protein,Os02g0537400 protein (Fragment),Os02g0297067 protein A0A0P0VHW9,A0A0N7KFF5,A0A0P0VHW8 A0A0P0VHW9_ORYSJ,A0A0N7KFF5_ORYSJ,A0A0P0VHW8_ORYSJ Os02g0297132 OSNPB_020297132,Os02g0537400 OSNPB_020537400,Os02g0297067 OSNPB_020297067 ENOG411E0J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) NA NA NA NA NA NA NA ENOG411E0J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 Os06g0131500 protein (cDNA clone:001-117-A07, full insert sequence),Os06g0131500 protein Q0DEW3,A0A0P0WSN3 Q0DEW3_ORYSJ,A0A0P0WSN3_ORYSJ Os06g0131500 Os06g0131500 OSNPB_060131500,Os06g0131500 OSNPB_060131500 ENOG411E0J7 VSR6,VSR7 Q9FYH7,Q8L7E3,F4JUS0 VSR6_ARATH,VSR7_ARATH,F4JUS0_ARATH Vacuolar-sorting receptor 6 (AtVSR6) (BP80-like protein d) (AtBP80d) (Epidermal growth factor receptor-like protein 6) (AtELP6),Vacuolar-sorting receptor 7 (AtVSR7) (BP80-like protein f) (AtBP80f) (Epidermal growth factor receptor-like protein 3) (AtELP3),VACUOLAR SORTING RECEPTOR 7 FUNCTION: Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. {ECO:0000250}. 70258,69800,70257 Vacuolar-sorting receptor 6 (AtVSR6) (BP80-like protein d) (AtBP80d) (Epidermal growth factor receptor-like protein 6) (AtELP6),Vacuolar-sorting receptor 7 (AtVSR7) (BP80-like protein f) (AtBP80f) (Epidermal growth factor receptor-like protein 3) (AtELP3),VACUOLAR SORTING RECEPTOR 7 clathrin-coated vesicle membrane [GO:0030665]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; calcium ion binding [GO:0005509]; protein transport [GO:0015031],Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; protein transport [GO:0015031],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]; calcium ion binding [GO:0005509] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:12493849}.,TISSUE SPECIFICITY: Expressed at low levels in seedlings, roots, young leaves, flowers and siliques. {ECO:0000269|PubMed:10561538, ECO:0000269|PubMed:12493849}. locus:2015726;,locus:2119792; AT1G30900,AT4G20110 vacuolar-sorting receptor Os06g0664300 protein (Putative vacuolar sorting receptor protein) Q655Y8 Q655Y8_ORYSJ Os06g0664300 OSNPB_060664300 P0473H04.5 ENOG411E0J6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MADS box protein MADS-box protein-like (Os01g0975800 protein),Os09g0116000 protein,MADS-box protein-like (Os09g0116800 protein),Os09g0402533 protein (Fragment) Q94CT0,Q6YW95,Q6YTZ9,A0A0P0XN39 Q94CT0_ORYSJ,Q6YW95_ORYSJ,Q6YTZ9_ORYSJ,A0A0P0XN39_ORYSJ Os01g0975800 OsJ_04958 OSNPB_010975800 P0459B04.28,P0563F09.11 Os09g0116000 OSNPB_090116000,Os09g0116800 OSNPB_090116800 P0563F09.24 P0598D02.10,Os09g0402533 OSNPB_090402533 ENOG411E0J9 GALT31A Q9MAP8 B3GT6_ARATH Beta-1,6-galactosyltransferase GALT31A (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 6) (GT31 family galactosyltransferase 1) (AtGALT31A) DISRUPTION PHENOTYPE: Embryonic lethality, due to the arrest of embryo development at the globular stage. {ECO:0000269|PubMed:23837821}. FUNCTION: Beta-galactosyltransferase involved in elongation of beta-1,6-linked galactan side chains on arabinogalactan proteins. Required for the progression of embryogenesis beyond the globular stage (PubMed:23837821). Beta-galactosyltransferase involved in the biosynthesis of type II arabinogalactan. Transfers galactose from UDP-galactose to a mixture of various oligosaccharides derived from arabinogalactan proteins. Forms a complex with GALT29A that can work cooperatively to enhance the activities of adding galactose residues at O6 positions to beta-1,6-linked galactan and beta-1,3-linked galactan (PubMed:24693939). {ECO:0000269|PubMed:23837821, ECO:0000269|PubMed:24693939}. PATHWAY: Protein modification; protein glycosylation. 2.4.1.- 44596 Beta-1,6-galactosyltransferase GALT31A (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 6) (GT31 family galactosyltransferase 1) (AtGALT31A) Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; galactosyltransferase activity [GO:0008378]; embryo development ending in seed dormancy [GO:0009793]; protein glycosylation [GO:0006486] DEVELOPMENTAL STAGE: Expressed in the suspensor of globular stage embryos. {ECO:0000269|PubMed:23837821}. locus:2038031; AT1G32930 Galactosyltransferase NA NA NA NA NA NA NA ENOG411E0J8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Os11g0492800 protein A0A0P0Y2E9 A0A0P0Y2E9_ORYSJ Os11g0492800 OSNPB_110492800 ENOG411DSNB Q9SS89 Q9SS89_ARATH At3g01660 (F4P13.20 protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) 31762 At3g01660 (F4P13.20 protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) methyltransferase activity [GO:0008168] locus:2084238; AT3G01660 Methyltransferase domain OSJNBb0011N17.9 protein (Os04g0481300 protein) (cDNA clone:J013097E10, full insert sequence) Q7XUQ3 Q7XUQ3_ORYSJ Os04g0481300 Os04g0481300 OSJNBb0011N17.9 OSNPB_040481300 ENOG411DSNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B_lectin Os06g0619600 protein (Putative S-receptor kinase),Os06g0620200 protein (Fragment),Os06g0619200 protein,Os06g0619066 protein (Fragment) Q69XP2,A0A0P0WZ81,A0A0P0WYP8,A0A0P0WZ29 Q69XP2_ORYSJ,A0A0P0WZ81_ORYSJ,A0A0P0WYP8_ORYSJ,A0A0P0WZ29_ORYSJ Os06g0619600 OsJ_21989 OSNPB_060619600 P0012B02.29,Os06g0620200 OSNPB_060620200,Os06g0619200 OSNPB_060619200,Os06g0619066 OSNPB_060619066 ENOG411DSNI STP14 Q8GW61,A0A1P8AT69 STP14_ARATH,A0A1P8AT69_ARATH Sugar transport protein 14 (Hexose transporter 14),Sugar transporter 14 FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}. 55386,39343 Sugar transport protein 14 (Hexose transporter 14),Sugar transporter 14 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; glucose transmembrane transporter activity [GO:0005355]; sugar:proton symporter activity [GO:0005351]; glucose import [GO:0046323],integral component of membrane [GO:0016021]; substrate-specific transmembrane transporter activity [GO:0022891]; carbohydrate transport [GO:0008643] locus:2195995; AT1G77210 sugar transport protein Os09g0322000 protein (Putative monosaccharide transporter) (cDNA clone:J013106G10, full insert sequence),Os09g0322000 protein (Putative monosaccharide transporter),Os09g0322000 protein (Fragment) Q69NC3,Q69NC2,A0A0P0XK00 Q69NC3_ORYSJ,Q69NC2_ORYSJ,A0A0P0XK00_ORYSJ OJ1742_G01.36-1 Os09g0322000 OsJ_28852 OSNPB_090322000,OJ1742_G01.36-2 Os09g0322000 OSNPB_090322000,Os09g0322000 OSNPB_090322000 ENOG411DSNH GPX7,GPX1 Q9SZ54,P52032,A0A1P8B5T1 GPX7_ARATH,GPX1_ARATH,A0A1P8B5T1_ARATH Putative glutathione peroxidase 7, chloroplastic (EC 1.11.1.9),Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic (PHGPx) (EC 1.11.1.12),Glutathione peroxidase 7 Sensitive to photooxidative stress-S. Karpinski-2009 FUNCTION: May constitute a glutathione peroxidase-like protective system against oxidative stresses. {ECO:0000250}.,FUNCTION: Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione. {ECO:0000250|UniProtKB:O70325}. ARA:AT4G31870-MONOMER;,ARA:AT2G25080-MONOMER; R-ATH-2142712; 1.11.1.9,1.11.1.12 25774,26016,19170 Putative glutathione peroxidase 7, chloroplastic (EC 1.11.1.9),Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic (PHGPx) (EC 1.11.1.12),Glutathione peroxidase 7 chloroplast [GO:0009507]; glutathione peroxidase activity [GO:0004602]; response to karrikin [GO:0080167]; response to oxidative stress [GO:0006979],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; glutathione peroxidase activity [GO:0004602]; phospholipid-hydroperoxide glutathione peroxidase activity [GO:0047066]; response to oxidative stress [GO:0006979],glutathione peroxidase activity [GO:0004602]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers, green siliques and seeds. {ECO:0000269|PubMed:14617062}. locus:2116782;,locus:2040179; AT4G31870,AT2G25080 glutathione peroxidase Glutathione peroxidase B7FAE9 B7FAE9_ORYSJ Os06g0185900 OSNPB_060185900 ENOG411DSNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA xyloglucan Xyloglucan endotransglucosylase/hydrolase (EC 2.4.1.207) Q2R336 Q2R336_ORYSJ LOC_Os11g33270 Os11g0539200 OsJ_34148 OSNPB_110539200 FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. {ECO:0000256|RuleBase:RU361120}. ENOG411DSNJ U2AF35A,U2AF35B,ATU2AF35A Q9S709,Q9FMY5,A8MRI1,Q3EAP8 U2AFA_ARATH,U2AFB_ARATH,A8MRI1_ARATH,Q3EAP8_ARATH Splicing factor U2af small subunit A (U2 auxiliary factor 35 kDa subunit A) (U2 small nuclear ribonucleoprotein auxiliary factor small subunit A) (U2 snRNP auxiliary factor small subunit A) (Zinc finger CCCH domain-containing protein 8) (AtC3H8),Splicing factor U2af small subunit B (U2 auxiliary factor 35 kDa subunit B) (U2 small nuclear ribonucleoprotein auxiliary factor small subunit B) (U2 snRNP auxiliary factor small subunit B) (Zinc finger CCCH domain-containing protein 60) (AtC3H60),U2 snRNP auxiliary factor small subunit,Zinc finger C-x8-C-x5-C-x3-H type family protein FUNCTION: Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}. R-ATH-72163; 34572,33232,28916,8742 Splicing factor U2af small subunit A (U2 auxiliary factor 35 kDa subunit A) (U2 small nuclear ribonucleoprotein auxiliary factor small subunit A) (U2 snRNP auxiliary factor small subunit A) (Zinc finger CCCH domain-containing protein 8) (AtC3H8),Splicing factor U2af small subunit B (U2 auxiliary factor 35 kDa subunit B) (U2 small nuclear ribonucleoprotein auxiliary factor small subunit B) (U2 snRNP auxiliary factor small subunit B) (Zinc finger CCCH domain-containing protein 60) (AtC3H60),U2 snRNP auxiliary factor small subunit,Zinc finger C-x8-C-x5-C-x3-H type family protein nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; U2AF [GO:0089701]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; pre-mRNA 3'-splice site binding [GO:0030628]; mRNA splicing, via spliceosome [GO:0000398]; photoperiodism, flowering [GO:0048573],U2AF [GO:0089701]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398],spliceosomal complex [GO:0005681]; U2AF [GO:0089701]; metal ion binding [GO:0046872]; pre-mRNA 3'-splice site binding [GO:0030628]; mRNA splicing, via spliceosome [GO:0000398] locus:2196929;,locus:2165447;,locus:1006230269; AT1G27650,AT5G42820,AT3G44785 splicing factor U2af small subunit Splicing factor U2af small subunit A (U2 auxiliary factor 35 kDa subunit A) (U2 small nuclear ribonucleoprotein auxiliary factor small subunit A) (U2 snRNP auxiliary factor small subunit A) (Zinc finger CCCH domain-containing protein 60) (OsC3H60),Splicing factor U2af small subunit B (U2 auxiliary factor 35 kDa subunit B) (U2 small nuclear ribonucleoprotein auxiliary factor small subunit B) (U2 snRNP auxiliary factor small subunit B) (Zinc finger CCCH domain-containing protein 38) (OsC3H38),Os01g0667800 protein Q9ZQW8,Q6AUG0,Q0JKK3 U2AFA_ORYSJ,U2AFB_ORYSJ,Q0JKK3_ORYSJ U2AF35A Os09g0491756 LOC_Os09g31482 OsJ_028686,U2AF35B Os05g0564200 LOC_Os05g48960 OsJ_018769 OsJ_19555 OSJNBb0053D02.11,Os01g0667800 Os01g0667800 OSNPB_010667800 FUNCTION: Necessary for the splicing of pre-mRNA. {ECO:0000250}. ENOG411DSNN CRLK2 Q9LFV3 CRLK2_ARATH Calcium/calmodulin-regulated receptor-like kinase 2 (AtCRLK2) (EC 2.7.11.1) 2.7.11.1 48761 Calcium/calmodulin-regulated receptor-like kinase 2 (AtCRLK2) (EC 2.7.11.1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2143166; AT5G15730 leucine-rich repeat receptor-like serine threonine-protein kinase Os06g0283300 protein,2x PHD domain containing protein-like (Os06g0283200 protein) (cDNA clone:J033068N07, full insert sequence) Q0DCW3,Q5VMR7,A0A0P0WVL7 Q0DCW3_ORYSJ,Q5VMR7_ORYSJ,A0A0P0WVL7_ORYSJ Os06g0283300 Os06g0283300 OSNPB_060283300,Os06g0283200 OSJNBa0021H05.26 OSNPB_060283200,Os06g0283300 OSNPB_060283300 ENOG411DSNQ HY2 Q9SR43,F4IZU7,A0A1I9LNG4 PFBS_ARATH,F4IZU7_ARATH,A0A1I9LNG4_ARATH Phytochromobilin:ferredoxin oxidoreductase, chloroplastic (EC 1.3.7.4) (PFB synthase) (PPhiB synthase) (Phytochromobilin synthase),Phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) Express nuclear-encoded Lhcb and RbcS transcripts in the absence of chloroplast development.,Long hypocotyl phenotypes under white light. Long hypocotyl-J. Lagaris-2001 FUNCTION: Catalyzes the two-electron reduction of biliverdin IX-alpha to the tetrapyrrole chromophore phytochromobilin (PPhiB). ARA:AT3G09150-MONOMER;MetaCyc:AT3G09150-MONOMER; 1.3.7.4; 1.3.7.4 38130,29112,31637 Phytochromobilin:ferredoxin oxidoreductase, chloroplastic (EC 1.3.7.4) (PFB synthase) (PPhiB synthase) (Phytochromobilin synthase),Phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) chloroplast [GO:0009507]; cobalt ion binding [GO:0050897]; phytochromobilin:ferredoxin oxidoreductase activity [GO:0050619]; chloroplast-nucleus signaling pathway [GO:0010019]; phytochromobilin biosynthetic process [GO:0010024],cobalt ion binding [GO:0050897]; oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor [GO:0016636]; phytochromobilin biosynthetic process [GO:0010024] locus:2083484; AT3G09150 Phytochromobilin ferredoxin oxidoreductase Os01g0949400 protein (Putative phytochromobilin synthase) (cDNA clone:J033037A10, full insert sequence),Os01g0949400 protein Q5JKX8,A0A0P0VCY5 Q5JKX8_ORYSJ,A0A0P0VCY5_ORYSJ B1147A04.17-2 Os01g0949400 OsJ_04760 OSNPB_010949400,Os01g0949400 OSNPB_010949400 ENOG411DSNP Q9FF12,Q9FLK4 GSXL9_ARATH,GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 9),Flavin-containing monooxygenase FMO GS-OX-like 8 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 8) FUNCTION: Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. {ECO:0000250}.,FUNCTION: Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. {ECO:0000250|UniProtKB:Q9SS04}. ARA:AT5G07800-MONOMER;,ARA:AT5G61290-MONOMER; 1.8.-.- 52337,52407 Flavin-containing monooxygenase FMO GS-OX-like 9 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 9),Flavin-containing monooxygenase FMO GS-OX-like 8 (EC 1.8.-.-) (Flavin-monooxygenase glucosinolate S-oxygenase-like 8) flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; oxidation-reduction process [GO:0055114] locus:2177813;,locus:2163193; AT5G07800,AT5G61290 flavin-containing monooxygenase Flavin-containing monooxygenase (EC 1.-.-.-),Os07g0111700 protein (Fragment) Q8GRN5,Q6EP39,Q5Z7A4,Q8GS68,A0A0P0X1W7,A0A0P0X1W2,A0A0P0V2P7,A0A0P0X1Z9,A0A0P0X1K1 Q8GRN5_ORYSJ,Q6EP39_ORYSJ,Q5Z7A4_ORYSJ,Q8GS68_ORYSJ,A0A0P0X1W7_ORYSJ,A0A0P0X1W2_ORYSJ,A0A0P0V2P7_ORYSJ,A0A0P0X1Z9_ORYSJ,A0A0P0X1K1_ORYSJ OJ1123_C12.127 OJ1118_G09.105 Os07g0111900 OSNPB_070111900,Os02g0580600 Os02g0580600 B1267B06.33 OJ1115_A05.8 OSNPB_020580600,Os06g0528700 Os06g0528700 OsJ_21550 OSNPB_060528700 P0001B01.30,OJ1513_F02.101 OJ1118_G09.108 Os07g0112100 OsJ_22847 OSNPB_070112100,Os07g0112000 OSNPB_070112000,Os07g0111700 OSNPB_070111700,Os01g0368000 OSNPB_010368000 ENOG411DSNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain B1358B12.16 protein (Os04g0463000 protein) Q6MWE1 Q6MWE1_ORYSJ Os04g0463000 Os04g0463000 B1358B12.16 OsJ_15077 OSNPB_040463000 ENOG411DSNR NMA O49319,F4IA77 O49319_ARATH,F4IA77_ARATH Glycoside hydrolase family 28 protein / polygalacturonase (Pectinase) family protein (Putative polygalacturonase),Pectin lyase-like superfamily protein ARA:AT2G33160-MONOMER; 74972,44119 Glycoside hydrolase family 28 protein / polygalacturonase (Pectinase) family protein (Putative polygalacturonase),Pectin lyase-like superfamily protein cell wall [GO:0005618]; extracellular region [GO:0005576]; nucleic acid binding [GO:0003676]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; embryo development ending in seed dormancy [GO:0009793]; suspensor development [GO:0010098]; zygote elongation [GO:0080159],lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; plant-type secondary cell wall biogenesis [GO:0009834] locus:2046555;,locus:2032125; AT2G33160,AT1G78400 polygalacturonase Os06g0611400 protein (Putative polygalacturonase) Q69X45 Q69X45_ORYSJ Os06g0611400 Os06g0611400 OSNPB_060611400 P0429G06.2 P0490F09.38 ENOG411DSNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ricin B-like lectin R40C1 (Osr40c1) Q10M12 40C1_ORYSJ R40C1 Os03g0327600 LOC_Os03g21040 OSJNBb0014I10.3 FUNCTION: Lectin which binds carbohydrates in vitro. Interacts through its lectin domain with glycan structures containing specific motifs. {ECO:0000250|UniProtKB:Q945P1}. ENOG411DSNW O81042 O81042_ARATH 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) (At2g46890) (Uncharacterized protein At2g46890) 38117 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) (At2g46890) (Uncharacterized protein At2g46890) cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; lipid metabolic process [GO:0006629] locus:2041359; AT2G46890 Protein of unknown function (DUF1295) Os04g0105300 protein (Fragment),Os04g0105300 protein Q0JFG5,A0A0P0W5X1 Q0JFG5_ORYSJ,A0A0P0W5X1_ORYSJ Os04g0105300 Os04g0105300 OSNPB_040105300,Os04g0105300 OSNPB_040105300 ENOG411DSNV PIFI Q9LVZ5,F4J034,F4J037,F4J036,B3H4M0 Q9LVZ5_ARATH,F4J034_ARATH,F4J037_ARATH,F4J036_ARATH,B3H4M0_ARATH Post-illumination chlorophyll fluorescence increase (Uncharacterized protein At3g15840),Post-illumination chlorophyll fluorescence increase 29691,29377,27730,29732,23990 Post-illumination chlorophyll fluorescence increase (Uncharacterized protein At3g15840),Post-illumination chlorophyll fluorescence increase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; thylakoid [GO:0009579]; chlororespiration [GO:0010478] locus:2093287; AT3G15840 post-illumination chlorophyll fluorescence increase Expressed protein (Os03g0586500 protein) (cDNA clone:006-208-G07, full insert sequence) (cDNA clone:J013132D23, full insert sequence) Q6F2V2 Q6F2V2_ORYSJ OSJNBa0010D22.23 LOC_Os03g38950 Os03g0586500 OSNPB_030586500 ENOG411DSNY emb2444 Q9ZU66 Q9ZU66_ARATH Putative spliceosome-associated protein (RNA-binding (RRM/RBD/RNP motifs) family protein) Embryo defective; Transition-D. Meinke-2002 R-ATH-72163;R-ATH-72165; 39888 Putative spliceosome-associated protein (RNA-binding (RRM/RBD/RNP motifs) family protein) nucleolus [GO:0005730]; mRNA binding [GO:0003729] locus:2046298; AT2G18510 Splicing factor 3b subunit Os10g0457000 protein (Splicing factor 3B subunit 4, putative, expressed) (cDNA clone:J033130N07, full insert sequence),Os10g0457000 protein (Fragment) Q7XDP6,A0A0P0XVL8 Q7XDP6_ORYSJ,A0A0P0XVL8_ORYSJ LOC_Os10g31900 Os10g0457000 OSNPB_100457000,Os10g0457000 OSNPB_100457000 ENOG411DSNX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411DSNZ PHYC P14714 PHYC_ARATH Phytochrome C Long hypocotyl under red light-P. Quail-2002 FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. 123722 Phytochrome C photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]; detection of visible light [GO:0009584]; protein-chromophore linkage [GO:0018298]; protein-tetrapyrrole linkage [GO:0017006]; red, far-red light phototransduction [GO:0009585]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2165199; AT5G35840 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region Phytochrome C,Os03g0752100 protein (Fragment) Q10CQ8,A0A0P0W3E4 PHYC_ORYSJ,A0A0P0W3E4_ORYSJ PHYC Os03g0752100 LOC_Os03g54084 OJ1112_G08.5 OsJ_012088 OSJNBa0032E21.08 OSJNBa0047E24.9,Os03g0752100 OSNPB_030752100 FUNCTION: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. ENOG411DSN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os02g0468800 protein (Selenium binding protein-like protein) Q6K8H8 Q6K8H8_ORYSJ Os02g0468800 OJ1057_F01.19 OsJ_06625 OSNPB_020468800 ENOG411DSN4 P0DKJ6 GDL4_ARATH GDSL esterase/lipase At1g20120 (EC 3.1.1.-) (Extracellular lipase At1g20120) ARA:AT1G20120-MONOMER; 3.1.1.- 44222 GDSL esterase/lipase At1g20120 (EC 3.1.1.-) (Extracellular lipase At1g20120) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] locus:2198666; AT1G20120 FYVE Os07g0573300 protein,Os07g0573300 protein (Fragment) Q6ZL20,A0A0P0X7X9 Q6ZL20_ORYSJ,A0A0P0X7X9_ORYSJ OJ1699_E05.17 Os07g0573300 OSNPB_070573300,Os07g0573300 OSNPB_070573300 ENOG411DSN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase Os06g0212500 protein (Fragment) A0A0P0WU89 A0A0P0WU89_ORYSJ Os06g0212500 OSNPB_060212500 ENOG411EHZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Queuine tRNA-ribosyltransferase NA NA NA NA NA NA NA ENOG411EHZC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHZ4 Q9LY96 Q9LY96_ARATH Transmembrane protein (Uncharacterized protein F18O22_120) 14177 Transmembrane protein (Uncharacterized protein F18O22_120) integral component of membrane [GO:0016021] locus:2145633; AT5G14330 NA NA NA NA NA NA NA NA ENOG411EHZ6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DT2Q A0A1I9LQC1,F4J9U2 A0A1I9LQC1_ARATH,F4J9U2_ARATH Uncharacterized protein 121613,130821 Uncharacterized protein locus:2091270; AT3G12590 NA Os01g0974300 protein (Fragment) A0A0P0VDJ7 A0A0P0VDJ7_ORYSJ Os01g0974300 OSNPB_010974300 ENOG411DX17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed (Os10g0446400 protein) (cDNA clone:006-208-H04, full insert sequence) Q109M2 Q109M2_ORYSJ Os10g0446400 LOC_Os10g30944 OSNPB_100446400 ENOG411DX16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function Os02g0254100 protein,Os06g0186800 protein,Os02g0253502 protein,Os12g0236325 protein,Os12g0230301 protein Q6ET10,Q5SMU9,B9F4U3,B9GCI6,A0A0N7KTS5 Q6ET10_ORYSJ,Q5SMU9_ORYSJ,B9F4U3_ORYSJ,B9GCI6_ORYSJ,A0A0N7KTS5_ORYSJ Os02g0254100 Os02g0254100 OsJ_06115 OSNPB_020254100 P0463G12.29,Os06g0186800 OsJ_20387 OSNPB_060186800 P0470C02.9,Os02g0253502 OsJ_06111 OSNPB_020253502,Os12g0236325 OsJ_35670 OSNPB_120236325,Os12g0230301 OSNPB_120230301 ENOG411DX13 CENPC Q66LG9 CENPC_ARATH Centromere protein C (AtCENP-C) (CENP-C) (CENP-C homolog) FUNCTION: Component of the CENPA-NAC (nucleosome-associated) complex, a complex that plays a central role in assembly of kinetochore proteins, mitotic progression and chromosome segregation. {ECO:0000250|UniProtKB:Q03188}. 78935 Centromere protein C (AtCENP-C) (CENP-C) (CENP-C homolog) chromosome, centromeric region [GO:0000775]; condensed nuclear chromosome kinetochore [GO:0000778]; kinetochore [GO:0000776]; nucleus [GO:0005634]; centromeric DNA binding [GO:0019237]; attachment of mitotic spindle microtubules to kinetochore [GO:0051315]; attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation [GO:0051455]; cell division [GO:0051301]; kinetochore assembly [GO:0051382] locus:2196578; AT1G15660 NA Os01g0617700 protein Q0JL80 Q0JL80_ORYSJ Os01g0617700 Os01g0617700 OsJ_02621 OSNPB_010617700 ENOG411DX12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotide-diphospho-sugar transferase Os01g0920700 protein (Fragment) A0A0P0VC61 A0A0P0VC61_ORYSJ Os01g0920700 OSNPB_010920700 ENOG411DX11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411DX10 HEN1 Q9C5Q8,A0A1P8B4L0,F4JVP4 HEN1_ARATH,A0A1P8B4L0_ARATH,F4JVP4_ARATH Small RNA 2'-O-methyltransferase (EC 2.1.1.n8) (Protein CORYMBOSA 2) (Protein HUA ENHANCER 1) (S-adenosylmethionine-dependent RNA methyltransferase HEN1),Double-stranded RNA-binding domain (DsRBD)-containing protein DISRUPTION PHENOTYPE: Reduced organ size, altered rosette leaf shape and increased number of coflorescences. Urydilation of miRNA 3'-ends. {ECO:0000269|PubMed:11874905, ECO:0000269|PubMed:11917084, ECO:0000269|PubMed:16111943}. Plants exhibit pleiotropic phenotypes; most aerial organs are reduced in size: leaves and floral organs are small and plants are shorter compared to wild-type; small cells in mature leaves and petals; rosette leaves are pointed at the apical end and the edges tend to curl upward; delayed flowering; high flower density in inflorescence; reduced internode elongation in the stems; increased number of coflorescences; under long-day conditions (16 hour light/8 hour darkness) plants produce more cauline leaves with axillary inflorescences before producing single flowers on the inflorescence stems than wild type plants; reduced male and female fertility; anthers from early-arising flowers often fail to dehisce although late-arising flowers do produce pollen the amount of pollen produced appears to be greatly reduced; reduced seed set in siliques.,Slight increase in rosette leaf number.,Slight decrease in rosette leaf number. Corymb-like inflorescences; Increased cauline leaf number; Increased flower growth rate; Short stamens; Reduced fertility; Late flowering-Y. Komeda-2002 FUNCTION: Methyltransferase that adds a methyl group to the ribose of the last nucleotide of small RNAs (sRNAs). This protects the 3'-end of sRNAs from uridylation activity and subsequent degradation. Can methylate 3'-end of microRNAs (miRNAs), small interfering RNAs (siRNas) and trans-acting small interfering RNAs (ta-siRNAs). Involved in plant development through its role in small RNAs processing. Required for the specification of reproductive organ identities and the probable repression of A class genes. May control floral determinacy possibly by regulating the expression of the C class floral homeotic gene AGAMOUS (AG). {ECO:0000269|PubMed:11874905, ECO:0000269|PubMed:11917084, ECO:0000269|PubMed:15705854, ECO:0000269|PubMed:16111943}. 2.1.1.n8 104454,84711,82853 Small RNA 2'-O-methyltransferase (EC 2.1.1.n8) (Protein CORYMBOSA 2) (Protein HUA ENHANCER 1) (S-adenosylmethionine-dependent RNA methyltransferase HEN1),Double-stranded RNA-binding domain (DsRBD)-containing protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; O-methyltransferase activity [GO:0008171]; RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173]; leaf proximal/distal pattern formation [GO:0010589]; leaf vascular tissue pattern formation [GO:0010305]; mRNA cleavage involved in gene silencing by miRNA [GO:0035279]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; regulation of flower development [GO:0009909]; specification of floral organ identity [GO:0010093]; virus induced gene silencing [GO:0009616],O-methyltransferase activity [GO:0008171]; RNA binding [GO:0003723]; RNA methyltransferase activity [GO:0008173] TISSUE SPECIFICITY: Expressed in stems, leaves and inflorescences. {ECO:0000269|PubMed:11874905, ECO:0000269|PubMed:11917084}. locus:2133114;,locus:2133124; AT4G20910,AT4G20920 small rna Os07g0164000 protein (cDNA clone:J013102N10, full insert sequence) Q0D8F3 Q0D8F3_ORYSJ Os07g0164000 Os07g0164000 OSNPB_070164000 ENOG411DX18 PK,SOS4 Q8W1X2,F4K8N1 PDXK_ARATH,F4K8N1_ARATH Pyridoxal kinase (EC 2.7.1.35) (Protein SALT OVERLY SENSITIVE 4) (Pyridoxal kinase-like protein SOS4) (Pyridoxine kinase) [Cleaved into: Pyridoxal kinase, N-terminally processed],PfkB-like carbohydrate kinase family protein Sensitive to salt stress and limited potassium-J. Zhu -2002 FUNCTION: Catalyzes the transfer of a phosphate group from ATP to the 5-hydroxylmethyl group of pyridoxal to form the biologically active pyridoxal phosphate. {ECO:0000269|PubMed:12068103}. MISCELLANEOUS: Defective pyridoxal kinase results in both salt hypersensitive and root hairless phenotypes. PATHWAY: Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxal: step 1/1. R-ATH-6798695;R-ATH-964975; 2.7.1.35; 2.7.1.35 34043,35058 Pyridoxal kinase (EC 2.7.1.35) (Protein SALT OVERLY SENSITIVE 4) (Pyridoxal kinase-like protein SOS4) (Pyridoxine kinase) [Cleaved into: Pyridoxal kinase, N-terminally processed],PfkB-like carbohydrate kinase family protein cytosol [GO:0005829]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; pyridoxal kinase activity [GO:0008478]; hyperosmotic salinity response [GO:0042538]; pyridoxal 5'-phosphate salvage [GO:0009443]; pyridoxine biosynthetic process [GO:0008615]; trichoblast differentiation [GO:0010054],pyridoxal kinase activity [GO:0008478]; pyridoxal 5'-phosphate salvage [GO:0009443] DEVELOPMENTAL STAGE: Becomes detectable 60 hours after imbibition of the seeds and remains constant up to 101 hours after imbibition. TISSUE SPECIFICITY: Expressed ubiquitously in leaves, stems, roots, flowers and siliques. locus:2153789; AT5G37850 Pyridoxal Os12g0600400 protein (Pyridoxal kinase, putative, expressed) (cDNA clone:J013069D01, full insert sequence) Q2QMK8 Q2QMK8_ORYSJ LOC_Os12g40830 Os12g0600400 OSNPB_120600400 ENOG411DX1W Q84JZ7 Q84JZ7_ARATH At3g29270 (RING/U-box superfamily protein) (Uncharacterized protein At3g29270) 30056 At3g29270 (RING/U-box superfamily protein) (Uncharacterized protein At3g29270) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842] locus:2091301; AT3G29270 Ring zinc finger protein-like Expressed protein (Os03g0427100 protein) (RING zinc finger protein, putative, expressed) (cDNA clone:J013000B10, full insert sequence),Os03g0211100 protein (RING zinc finger protein, putative, expressed) (cDNA clone:006-201-H12, full insert sequence) (cDNA clone:J033090H12, full insert sequence) Q75I59,Q10Q37 Q75I59_ORYSJ,Q10Q37_ORYSJ OSJNBa0083F15.23 LOC_Os03g31320 Os03g0427100 OsJ_11347 OSNPB_030427100,Os03g0211100 LOC_Os03g11260 Os03g0211100 OsJ_09880 OSNPB_030211100 ENOG411DX1V SAMDC4 Q3E9D5 DCAM4_ARATH S-adenosylmethionine decarboxylase proenzyme 4 (AdoMetDC4) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain (Protein BUSHY AND DWARF 2)] DISRUPTION PHENOTYPE: Reduction in the length of stem internodes. Increased thickness of veins in leaves and inflorescence stems. Altered morphology of xylem vessel elements. Altered homeostasis of polyamines. Hyposensitivity to auxin and hypersensitivity to cytokinin. The double mutants of bud2-1 and samdc1-1 are embryonic lethal. {ECO:0000269|PubMed:16699540, ECO:0000269|PubMed:20386573}. Dwarf; Short hypocotyl and petioles; Altered vascular bundle patterning-J. Li -2006 FUNCTION: Essential for biosynthesis of the polyamines spermidine and spermine. Essential for polyamine homeostasis, and normal plant embryogenesis, growth and development. {ECO:0000269|PubMed:16699540}. PATHWAY: Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1. {ECO:0000305}. ARA:AT5G18930-MONOMER; R-ATH-351202; 4.1.1.50; 4.1.1.50 39039 S-adenosylmethionine decarboxylase proenzyme 4 (AdoMetDC4) (EC 4.1.1.50) [Cleaved into: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain (Protein BUSHY AND DWARF 2)] cytosol [GO:0005829]; adenosylmethionine decarboxylase activity [GO:0004014]; plant organ development [GO:0099402]; S-adenosylmethioninamine biosynthetic process [GO:0006557]; spermidine biosynthetic process [GO:0008295]; spermine biosynthetic process [GO:0006597] locus:2144985; AT5G18930 S-adenosylmethionine decarboxylase proenzyme S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50),Os05g0221800 protein Q75KG4,A0A0P0WJE4 Q75KG4_ORYSJ,A0A0P0WJE4_ORYSJ Os05g0141800 OJ1264_A04.4 OJ1489_G03.12 OSNPB_050141800,Os05g0221800 OSNPB_050221800 ENOG411DX1U CYCD5-1,CYCD5:1 Q2V3B2,A0A1P8B534 CCD51_ARATH,A0A1P8B534_ARATH Cyclin-D5-1 (G1/S-specific cyclin-D5-1) (CycD5;1),Cyclin d51 37167,30398 Cyclin-D5-1 (G1/S-specific cyclin-D5-1) (CycD5;1),Cyclin d51 nucleus [GO:0005634]; cell division [GO:0051301]; DNA endoreduplication [GO:0042023] locus:2120081; AT4G37630 cell division Cyclin-D5-3 (G1/S-specific cyclin-D5-3) (CycD5;3) Q10QA2 CCD53_ORYSJ CYCD5-3 Os03g0203800 LOC_Os03g10650 ENOG411DX1T SBT4.14,XSP1 Q9LLL8,A0A1P8B4Y8 SBT4E_ARATH,A0A1P8B4Y8_ARATH Subtilisin-like protease SBT4.14 (EC 3.4.21.-) (Cucumisin-like protein) (Subtilase subfamily 4 member 14) (AtSBT4.14) (Xylem serine proteinase 1) (AtXSP1),Xylem serine peptidase 1 3.4.21.- 80329,63932 Subtilisin-like protease SBT4.14 (EC 3.4.21.-) (Cucumisin-like protein) (Subtilase subfamily 4 member 14) (AtSBT4.14) (Xylem serine proteinase 1) (AtXSP1),Xylem serine peptidase 1 cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; serine-type endopeptidase activity [GO:0004252],serine-type endopeptidase activity [GO:0004252] TISSUE SPECIFICITY: Expressed only in roots, particularly in xylem. {ECO:0000269|PubMed:10889267}. locus:2126896; AT4G00230 Xylem serine proteinase NA NA NA NA NA NA NA ENOG411DX1S PPOX1 P55826 PPOC_ARATH Protoporphyrinogen oxidase 1, chloroplastic (PPO1) (EC 1.3.3.4) FUNCTION: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. {ECO:0000269|PubMed:8982084}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrin-IX from protoporphyrinogen-IX: step 1/1.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT4G01690-MONOMER;MetaCyc:AT4G01690-MONOMER; 1.3.3.4 57695 Protoporphyrinogen oxidase 1, chloroplastic (PPO1) (EC 1.3.3.4) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; oxygen-dependent protoporphyrinogen oxidase activity [GO:0004729]; chlorophyll biosynthetic process [GO:0015995]; porphyrin-containing compound biosynthetic process [GO:0006779]; protoporphyrinogen IX biosynthetic process [GO:0006782] TISSUE SPECIFICITY: Expressed at high levels in the leaves and at low levels in the roots and floral buds. locus:2133397; AT4G01690 Protoporphyrinogen oxidase Protoporphyrinogen oxidase, chloroplastic (PPO) (EC 1.3.3.4) (Protoporphyrinogen oxidase 1),Os10g0473800 protein (Os10g0473900 protein) (Fragment) Q9AR38,C7J813 PPOC_ORYSJ,C7J813_ORYSJ PPOX1 Os01g0286600 LOC_Os01g18320 P0498A12.42,Os10g0473900 Os10g0473800 OSNPB_100473800 FUNCTION: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. ENOG411DX1R Q94JV2 Q94JV2_ARATH AT3g27050/MOJ10_14 (Plant/protein) 20611 AT3g27050/MOJ10_14 (Plant/protein) locus:2092015; AT3G27050 NA Expressed protein (Os11g0488600 protein) (cDNA clone:002-181-C01, full insert sequence) Q2R449 Q2R449_ORYSJ Os11g0488600 LOC_Os11g29700 Os11g0488600 OSNPB_110488600 ENOG411DX1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Frigida-like protein FRIGIDA-like protein Q851Y5 Q851Y5_ORYSJ Os03g0851400 LOC_Os03g63440 OsJ_13392 OSJNBa0015N08.16 OSNPB_030851400 ENOG411DX1P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0481400 protein (Putative nucleotide-binding leucine-rich-repeat protein 1),Os09g0313600 protein Q69PR5,A0A0P0XKP1 Q69PR5_ORYSJ,A0A0P0XKP1_ORYSJ P0045A07.101 Os07g0481400 OSNPB_070481400,Os09g0313600 OSNPB_090313600 ENOG411DX1Z MWD22.21,F13M23.290 Q9LU48,Q9SW12,A0A1P8BGV2 Q9LU48_ARATH,Q9SW12_ARATH,A0A1P8BGV2_ARATH Acid phosphatase (At5g51260) (HAD superfamily, subfamily IIIB acid phosphatase),Acid phosphatase-like protein (HAD superfamily, subfamily IIIB acid phosphatase) (Putative acid phosphatase),HAD superfamily, subfamily IIIB acid phosphatase ARA:AT5G51260-MONOMER;,ARA:AT4G25150-MONOMER; 29777,29961,24460 Acid phosphatase (At5g51260) (HAD superfamily, subfamily IIIB acid phosphatase),Acid phosphatase-like protein (HAD superfamily, subfamily IIIB acid phosphatase) (Putative acid phosphatase),HAD superfamily, subfamily IIIB acid phosphatase acid phosphatase activity [GO:0003993] locus:2176267;,locus:2117338; AT5G51260,AT4G25150 acid phosphatase Os06g0139800 protein (Putative acid phosphatase) (cDNA clone:001-018-A01, full insert sequence) Q5VPF2 Q5VPF2_ORYSJ Os06g0139800 OSJNBa0041F13.34 OSNPB_060139800 ENOG411DX1Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DX1X VIII-1,VIII-A,ATM1 Q9LHE9,F4I507,A0A1I9LLW5,F4I9H4,F4JCF9 MYO1_ARATH,MYO3_ARATH,A0A1I9LLW5_ARATH,F4I9H4_ARATH,F4JCF9_ARATH Myosin-1 (AtATM1),Myosin-3 (Myosin VIII A) (AtVIIIA),Myosin 1,p-loop containing nucleoside triphosphate hydrolases superfamily protein FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). Involved in endocytosis via its action in endosomal trafficking. {ECO:0000250, ECO:0000269|PubMed:18179725}.,FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250}. 131129,130009,100067,18839,132454 Myosin-1 (AtATM1),Myosin-3 (Myosin VIII A) (AtVIIIA),Myosin 1,p-loop containing nucleoside triphosphate hydrolases superfamily protein endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; myosin complex [GO:0016459]; phragmoplast [GO:0009524]; plasmodesma [GO:0009506]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; endocytosis [GO:0006897],myosin complex [GO:0016459]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],myosin complex [GO:0016459]; ATP binding [GO:0005524]; motor activity [GO:0003774],cell plate [GO:0009504]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; myosin complex [GO:0016459]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048] locus:2011922;,locus:2036655;,locus:2095370; AT3G19960,AT1G50360,AT1G42680 myosin-J heavy chain-like Os10g0488800 protein (Fragment) Q0IWT8,A0A0P0XVK2 Q0IWT8_ORYSJ,A0A0P0XVK2_ORYSJ Os10g0488800 OSNPB_100488800 ENOG411DX1E GH3.5,GH3.6 O81829,Q9LSQ4 GH35_ARATH,GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 5) (AtGH3-5),Indole-3-acetic acid-amido synthetase GH3.6 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 6) (AtGH3-6) (Protein DWARF IN LIGHT 1) (DFL-1) FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates. {ECO:0000269|PubMed:15659623}.,FUNCTION: Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates (PubMed:15659623). Involved in auxin signal transduction. Inhibits shoot and hypocotyl cell elongation, and lateral root cell differentiation in light (PubMed:11169197). {ECO:0000269|PubMed:11169197, ECO:0000269|PubMed:15659623}. MISCELLANEOUS: The gain-of-function mutant dfl1-D (T-DNA tagging) has a short hypocotyl under blue, red and far-red light, but not in darkness, shows an exaggerated dwarf phenotype in the adult plant caused by the inhibition of cell elongation in shoots, and inhibition of the lateral root growth without any reduction of primary root length. {ECO:0000269|PubMed:11169197}. ARA:AT4G27260-MONOMER;MetaCyc:AT4G27260-MONOMER;,ARA:AT5G54510-MONOMER;MetaCyc:AT5G54510-MONOMER; R-ATH-6798695; 6.3.2.- 69283,68897 Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 5) (AtGH3-5),Indole-3-acetic acid-amido synthetase GH3.6 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 6) (AtGH3-6) (Protein DWARF IN LIGHT 1) (DFL-1) indole-3-acetic acid amido synthetase activity [GO:0010279]; auxin homeostasis [GO:0010252]; camalexin biosynthetic process [GO:0010120]; positive regulation of camalexin biosynthetic process [GO:1901183]; response to auxin [GO:0009733],chloroplast [GO:0009507]; cytoplasm [GO:0005737]; indole-3-acetic acid amido synthetase activity [GO:0010279]; auxin homeostasis [GO:0010252]; auxin-activated signaling pathway [GO:0009734]; response to auxin [GO:0009733]; unidimensional cell growth [GO:0009826] TISSUE SPECIFICITY: Expressed in cotyledons, stipules, true leaves, hypocotyls, and all parts of the roots. Not detected in flowers. locus:2131739;,locus:2147314; AT4G27260,AT5G54510 Indole-3-acetic acid-amido synthetase Probable indole-3-acetic acid-amido synthetase GH3.1 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 1) (OsGH3-1) Q8LQM5 GH31_ORYSJ GH3.1 Os01g0785400 LOC_Os01g57610 B1070A12.26 OsJ_03707 FUNCTION: May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. {ECO:0000250}. ENOG411DX1B B3LF89,F4JF98 B3LF89_ARATH,F4JF98_ARATH Pectate lyase (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. {ECO:0000256|RuleBase:RU361123}. 4.2.2.2 37186,35060 Pectate lyase (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2100651; AT3G55140 Pectate lyase Pectate lyase (EC 4.2.2.2) Q8RYR4 Q8RYR4_ORYSJ Os01g0546800 OsJ_02161 OSJNBa0026J14.21 OSNPB_010546800 ENOG411DX1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF620) Os05g0252100 protein Q0DJM6 Q0DJM6_ORYSJ Os05g0252100 Os05g0252100 OSNPB_050252100 ENOG411DX1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 28 NA NA NA NA NA NA NA ENOG411DX1I KIN14T,KIN14U F4I1T9,Q8W0Y9,A0A1P8BH75 KN14T_ARATH,KN14U_ARATH,A0A1P8BH75_ARATH Kinesin-like protein KIN-14T,Kinesin-like protein KIN-14U,P-loop containing nucleoside triphosphate hydrolases superfamily protein ARA:GQT-2400-MONOMER;,ARA:GQT-1445-MONOMER; 96715,70296,51685 Kinesin-like protein KIN-14T,Kinesin-like protein KIN-14U,P-loop containing nucleoside triphosphate hydrolases superfamily protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2193914;,locus:2143759; AT1G55550,AT5G27950 KISc Kinesin-like protein KIN-14B,Kinesin-like protein KIN-14O A2ZRG4,B9G2X9 KN14B_ORYSJ,KN14O_ORYSJ KIN14B Os01g0260100 LOC_Os01g15540 OsJ_01175,KIN14O Os11g0648100 LOC_Os11g42800 OsJ_28899 ENOG411DX1H Q8VZ15 Q8VZ15_ARATH GTP binding protein (Uncharacterized protein At5g65960) 43688 GTP binding protein (Uncharacterized protein At5g65960) GTP binding [GO:0005525]; GTPase activity [GO:0003924] locus:2156832; AT5G65960 Alpha and gamma adaptin binding protein p34 OSJNBa0013K16.4 protein (Os04g0584800 protein) (cDNA clone:J033097L06, full insert sequence),Os04g0584800 protein (Fragment) Q7XP63,A0A0N7KJK7 Q7XP63_ORYSJ,A0A0N7KJK7_ORYSJ Os04g0584800 Os04g0584800 OsJ_15925 OSJNBa0013K16.4 OSNPB_040584800,Os04g0584800 OSNPB_040584800 ENOG411DT27 ACHT4 O64654,A8MQQ7 TRL11_ARATH,A8MQQ7_ARATH Thioredoxin-like 1-1, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 4) (AtACHT4) (Lilium-type thioredoxin 1-1),Atypical CYS HIS rich thioredoxin 4 FUNCTION: Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:19109414}. 30323,26875 Thioredoxin-like 1-1, chloroplastic (Atypical cysteine/histidine-rich thioredoxin 4) (AtACHT4) (Lilium-type thioredoxin 1-1),Atypical CYS HIS rich thioredoxin 4 chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; cell redox homeostasis [GO:0045454],cell [GO:0005623]; cell redox homeostasis [GO:0045454] locus:2025625; AT1G08570 thioredoxin-like Thioredoxin-like 1-2, chloroplastic (Lilium-type thioredoxin 1-2),Os03g0326500 protein (Fragment) Q10M18,A0A0P0VXR5 TRL12_ORYSJ,A0A0P0VXR5_ORYSJ Os03g0326500 LOC_Os03g21000,Os03g0326500 OSNPB_030326500 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. ENOG411DT21 FBX14 Q9LTX2,Q8RWQ8 TIR1L_ARATH,FBX14_ARATH Transport inhibitor response 1-like protein (TIR1-like protein),F-box protein FBX14 (Transport inhibitor response 1-like protein) (TIR1-like protein) MISCELLANEOUS: The myo-inositol hexakisphosphate acts as a structural cofactor. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 69317,69500 Transport inhibitor response 1-like protein (TIR1-like protein),F-box protein FBX14 (Transport inhibitor response 1-like protein) (TIR1-like protein) nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; auxin binding [GO:0010011]; inositol hexakisphosphate binding [GO:0000822]; auxin-activated signaling pathway [GO:0009734]; protein ubiquitination [GO:0016567] locus:2158824;,locus:2135942; AT5G49980,AT4G24390 Transport inhibitor response 1-like NA NA NA NA NA NA NA ENOG411DU98 RPL13 Q9SYL9 RK13_ARATH 50S ribosomal protein L13, chloroplastic (CL13) (Protein EMBRYO DEFECTIVE 1473) Embryo defective; Globular-D. Meinke-2002 26789 50S ribosomal protein L13, chloroplastic (CL13) (Protein EMBRYO DEFECTIVE 1473) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; ribosome [GO:0005840]; thylakoid [GO:0009579]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:2203010; AT1G78630 ribosomal protein L13 Os01g0749200 protein (Putative ribosomal protein L13) (cDNA clone:001-039-H01, full insert sequence) (cDNA clone:006-207-D01, full insert sequence) (cDNA clone:J013130F13, full insert sequence) (cDNA clone:J023139E02, full insert sequence) Q94J17 Q94J17_ORYSJ Os01g0749200 OsJ_03455 OSNPB_010749200 P0481E12.38 ENOG411DU99 SYT5,SYT4,NTMC2T2.1 Q8L706,A0JJX5,A0A1P8APH4 SYT5_ARATH,SYT4_ARATH,A0A1P8APH4_ARATH Synaptotagmin-5 (NTMC2T2.1) (Synaptotagmin E),Synaptotagmin-4 (NTMC2T2.2) (Synaptotagmin D),Calcium-dependent lipid-binding (CaLB domain) family protein FUNCTION: May be involved in membrane trafficking. {ECO:0000250}. 62929,63609,47046 Synaptotagmin-5 (NTMC2T2.1) (Synaptotagmin E),Synaptotagmin-4 (NTMC2T2.2) (Synaptotagmin D),Calcium-dependent lipid-binding (CaLB domain) family protein endomembrane system [GO:0012505]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; lipid binding [GO:0008289]; metal ion binding [GO:0046872],integral component of membrane [GO:0016021]; lipid binding [GO:0008289]; metal ion binding [GO:0046872] locus:2201036;,locus:2184931; AT1G05500,AT5G11100 Plant synaptotagmin Os04g0644900 protein (Fragment),Os08g0300200 protein Q0J9L1,A0A0P0XEF4 Q0J9L1_ORYSJ,A0A0P0XEF4_ORYSJ Os04g0644900 Os04g0644900 OSNPB_040644900,Os08g0300200 OSNPB_080300200 ENOG411DU97 MPA22.7 Q08A97,A8MS56 Q08A97_ARATH,A8MS56_ARATH At5g37530 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein 50559,50488 At5g37530 (NAD(P)-binding Rossmann-fold superfamily protein),NAD(P)-binding Rossmann-fold superfamily protein integral component of membrane [GO:0016021]; plastid [GO:0009536]; small protein activating enzyme activity [GO:0008641]; tRNA threonylcarbamoyladenosine dehydratase [GO:0061503]; cyclic threonylcarbamoyladenosine biosynthetic process [GO:0061504],integral component of membrane [GO:0016021]; small protein activating enzyme activity [GO:0008641] locus:2169881; AT5G37530 thiF family Os06g0251000 protein A0A0P0WV00 A0A0P0WV00_ORYSJ Os06g0251000 OSNPB_060251000 ENOG411DU94 T22K18.22 Q8LEC0,Q9SR62 Q8LEC0_ARATH,Q9SR62_ARATH Calcineurin-like metallo-phosphoesterase superfamily protein,Calcineurin-like metallo-phosphoesterase superfamily protein (Uncharacterized protein At3g09970) (Uncharacterized protein T22K18.22) 35085,34425 Calcineurin-like metallo-phosphoesterase superfamily protein,Calcineurin-like metallo-phosphoesterase superfamily protein (Uncharacterized protein At3g09970) (Uncharacterized protein T22K18.22) hydrolase activity [GO:0016787],cytosol [GO:0005829]; protein tyrosine phosphatase activity [GO:0004725]; peptidyl-tyrosine dephosphorylation [GO:0035335] locus:2100113;,locus:2100098; AT3G09960,AT3G09970 Calcineurin-like phosphoesterase Os04g0409500 protein Q0JDE9 Q0JDE9_ORYSJ Os04g0409500 Os04g0409500 OSNPB_040409500 ENOG411DU91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DZC Protein Brevis radix-like 4 (OsBRXL4),Os03g0853500 protein Q84T65,A0A0P0W5K4 BRXL4_ORYSJ,A0A0P0W5K4_ORYSJ BRXL4 Os03g0853500 LOC_Os03g63650 OsJ_13410,Os03g0853500 OSNPB_030853500 ENOG411DU9Z UGT83A1 Q9SGA8 U83A1_ARATH UDP-glycosyltransferase 83A1 (EC 2.4.1.-) 2.4.1.- 51500 UDP-glycosyltransferase 83A1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2078608; AT3G02100 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein expressed Os03g0757000 protein,Glucosyl transferase, putative, expressed (Os03g0757100 protein) (Putative glucosyltransferase),Os10g0331700 protein (Os10g0332000 protein) (Putative glucosyltransferase) (UDP-glucoronosyl and UDP-glucosyl transferase family protein),Os10g0332600 protein,Os10g0331600 protein (Fragment),Os10g0332300 protein (Fragment) B9F5S5,Q9AUV1,Q8LM13,B9G826,A0A0P0XTN4,A0A0N7KRL7 B9F5S5_ORYSJ,Q9AUV1_ORYSJ,Q8LM13_ORYSJ,B9G826_ORYSJ,A0A0P0XTN4_ORYSJ,A0A0N7KRL7_ORYSJ Os03g0757000 OsJ_12646 OSNPB_030757000,Os03g0757100 LOC_Os03g55020 Os03g0757100 OSJNBa0040E01.21 OSNPB_030757100,Os10g0332000 LOC_Os10g18510 Os10g0331700 OsJ_31104 OSJNAb0008A05.25 OSNPB_100332000,Os10g0332600 OsJ_31111 OSNPB_100332600,Os10g0331600 OSNPB_100331600,Os10g0332300 OSNPB_100332300 ENOG411DU9X YSL7 Q9SHY2 YSL7_ARATH Probable metal-nicotianamine transporter YSL7 (Protein YELLOW STRIPE LIKE 7) (AtYSL7) FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. 75701 Probable metal-nicotianamine transporter YSL7 (Protein YELLOW STRIPE LIKE 7) (AtYSL7) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857] locus:2018491; AT1G65730 transporter Probable metal-nicotianamine transporter YSL12 (Protein YELLOW STRIPE LIKE 12) (OsYSL12),Probable metal-nicotianamine transporter YSL14 (Protein YELLOW STRIPE LIKE 14) (OsYSL14),Os02g0633300 protein (Fragment) Q5JQD7,Q6H7J6,A0A0P0VM01 YSL12_ORYSJ,YSL14_ORYSJ,A0A0P0VM01_ORYSJ YSL12 Os04g0524600 LOC_Os04g44320 OSJNBb0065J09.17,YSL14 Os02g0633300 LOC_Os02g42220 OJ1643_A10.18,Os02g0633300 OSNPB_020633300 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DU9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ACT domain Os08g0533300 protein A0A0N7KQ73 A0A0N7KQ73_ORYSJ Os08g0533300 OSNPB_080533300 ENOG411DU9V NDX,AtNDX F4JI44,A0A1P8B7L9,A0A1P8B7M0,A0A1P8B7M1 NDX_ARATH,A0A1P8B7L9_ARATH,A0A1P8B7M0_ARATH,A0A1P8B7M1_ARATH Nodulin homeobox (NDX1 homeobox protein homolog) (AtNDX1),Sequence-specific DNA binding transcription factor ATNDX FUNCTION: Regulates COOLAIR, a set of antisense transcripts originating from the 3' end of FLOWERING LOCUS C (FLC). Associates with single-stranded DNA that is part of an RNA-DNA hybrid, or R-loop, that covers the COOLAIR promoter. R-loop stabilization mediated by NDX inhibits COOLAIR transcription, which in turn modifies FLC expression. {ECO:0000269|PubMed:23641115}. 101566,98662,99550,82135 Nodulin homeobox (NDX1 homeobox protein homolog) (AtNDX1),Sequence-specific DNA binding transcription factor ATNDX nucleolus [GO:0005730]; nucleus [GO:0005634]; single-stranded DNA binding [GO:0003697]; flower development [GO:0009908]; negative regulation of antisense RNA transcription [GO:0060195],nucleus [GO:0005634]; DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed predominantly in dividing tissues such as young leaves, root tips, flower buds and embryos. {ECO:0000269|PubMed:23641115}. locus:2139404; AT4G03090 HOX Os05g0188600 protein (Fragment),Os05g0188600 protein A0A0P0WIW7,A0A0P0WIY4 A0A0P0WIW7_ORYSJ,A0A0P0WIY4_ORYSJ Os05g0188600 OSNPB_050188600 ENOG411DU9W TPR15,TPR16 F4IKX0,A0A1P8B1G1,F4IKX1,F4K0Y5 F4IKX0_ARATH,A0A1P8B1G1_ARATH,F4IKX1_ARATH,F4K0Y5_ARATH Heat shock protein DnaJ with tetratricopeptide repeat-containing protein 122784,112055,119257,129179 Heat shock protein DnaJ with tetratricopeptide repeat-containing protein chloroplast [GO:0009507] locus:2062724;,locus:505006611; AT2G41520,AT5G12430 DnaJ homolog subfamily C member 7 Os01g0273500 protein (Fragment),Os05g0374600 protein (Fragment),Os05g0374500 protein (Fragment) Q0JNP9,A0A0P0WLJ5,A0A0P0WLL8 Q0JNP9_ORYSJ,A0A0P0WLJ5_ORYSJ,A0A0P0WLL8_ORYSJ Os01g0273500 Os01g0273500 OSNPB_010273500,Os05g0374600 OSNPB_050374600,Os05g0374500 OSNPB_050374500 ENOG411DU9T MEI1 A0A1P8AWF3,F4I701,F4I702 A0A1P8AWF3_ARATH,F4I701_ARATH,F4I702_ARATH Transcription coactivator 111392,108016,106317 Transcription coactivator cellular response to DNA damage stimulus [GO:0006974]; female meiotic nuclear division [GO:0007143] locus:2031412; AT1G77320 DNA topoisomerase 2-binding protein Os11g0191300 protein (cDNA clone:J023047F24, full insert sequence),Os11g0191300 protein,Os11g0191300 protein (Fragment) B7EHL9,Q0IU38,A0A0P0Y085 B7EHL9_ORYSJ,Q0IU38_ORYSJ,A0A0P0Y085_ORYSJ Os11g0191300 OSNPB_110191300 ENOG411DU9U PKP1 Q9LIK0 PKP1_ARATH Plastidial pyruvate kinase 1, chloroplastic (PK1) (PKp1) (EC 2.7.1.40) (Pyruvate kinase II) (Pyruvate kinase isozyme A) (PKP-ALPHA) DISRUPTION PHENOTYPE: Reduced plastidial pyruvate kinase activity and altered seed oil content leading to wrinkled seeds, retarded embryo elongation and reduced seed germination. {ECO:0000269|PubMed:17892448, ECO:0000269|PubMed:17965177}. FUNCTION: Required for plastidial pyruvate kinase activity. Involved in seed oil accumulation, embryo development and seed storage compounds mobilization upon germination. {ECO:0000269|PubMed:17892448, ECO:0000269|PubMed:17965177}. PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5. 2.7.1.40 65131 Plastidial pyruvate kinase 1, chloroplastic (PK1) (PKp1) (EC 2.7.1.40) (Pyruvate kinase II) (Pyruvate kinase isozyme A) (PKP-ALPHA) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; lipid metabolic process [GO:0006629]; response to cadmium ion [GO:0046686]; seed maturation [GO:0010431] DEVELOPMENTAL STAGE: In seeds, accumulates in endosperm and embryo. In torpedo-shaped embryos, restricted to the hypocotyl and in the outer parts of the young cotyledons. In later embryo stages, present in all tissues except root tips. {ECO:0000269|PubMed:17892448}. TISSUE SPECIFICITY: Mostly expressed in seeds, and, to a lower extent, in roots, leaves (veins and trichomes), stems, inflorescences, siliques, pollen (grains and tubes) and flowers (sepals and petals). {ECO:0000269|PubMed:17557808, ECO:0000269|PubMed:17892448}. locus:2084583; AT3G22960 Pyruvate kinase Pyruvate kinase (EC 2.7.1.40) (Fragment),Pyruvate kinase (EC 2.7.1.40) Q0D867,Q69WE5,A0A0P0X383,A0A0P0X347 Q0D867_ORYSJ,Q69WE5_ORYSJ,A0A0P0X383_ORYSJ,A0A0P0X347_ORYSJ Os07g0181000 Os07g0181000 OSNPB_070181000,OJ1014_E09.29-2 Os07g0181000 OSNPB_070181000,Os07g0181000 OSNPB_070181000 ENOG411DU9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial glycoprotein Mitochondrial glycoprotein-like (Os06g0326500 protein) (cDNA clone:J013134C08, full insert sequence),Os06g0326500 protein (Fragment) Q69T76,A0A0P0WVX8 Q69T76_ORYSJ,A0A0P0WVX8_ORYSJ Os06g0326500 Os06g0326500 OsJ_21180 OSNPB_060326500 P0652D10.37,Os06g0326500 OSNPB_060326500 ENOG411DU9S T7M13.8 A4IJ41,Q9SG90,A0A1I9LRX3 A4IJ41_ARATH,Q9SG90_ARATH,A0A1I9LRX3_ARATH Alpha/beta-Hydrolases superfamily protein (At3g10840),Alpha/beta-Hydrolases superfamily protein (Putative alpha/beta hydrolase),Alpha/beta-Hydrolases superfamily protein 50885,42769,44294 Alpha/beta-Hydrolases superfamily protein (At3g10840),Alpha/beta-Hydrolases superfamily protein (Putative alpha/beta hydrolase),Alpha/beta-Hydrolases superfamily protein chloroplast envelope [GO:0009941]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2103242; AT3G10840 hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411DU9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA FHA domain containing protein, expressed (FHA domain, putative) (Os11g0171700 protein),Os11g0171700 protein (Fragment) Q53P84,A0A0N7KSI0 Q53P84_ORYSJ,A0A0N7KSI0_ORYSJ LOC_Os11g07050 Os11g0171700 OSNPB_110171700,Os11g0171700 OSNPB_110171700 ENOG411DU9Q LSH6 Q9LMK2 LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 (Protein ORGAN BOUNDARY 6) FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. 21531 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 (Protein ORGAN BOUNDARY 6) nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA transcription [GO:0009299]; multicellular organism development [GO:0007275]; post-embryonic plant morphogenesis [GO:0090698]; regulation of transcription, DNA-templated [GO:0006355]; response to light stimulus [GO:0009416] locus:2007382; AT1G07090 Protein of unknown function (DUF640) Protein G1-like9 Q5W659 G1L9_ORYSJ G1L9 Os05g0347400 LOC_Os05g28040 B1164G01.10 OSJNBb0052F16.2 FUNCTION: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. {ECO:0000250}. ENOG411DU9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peroxidase Peroxidase (EC 1.11.1.7),Peroxidase (EC 1.11.1.7) (Fragment),Os03g0121300 protein (Fragment) Q10SI9,Q8LMR6,Q8W2X2,A0A0P0VSD0,A0A0P0VSH9 Q10SI9_ORYSJ,Q8LMR6_ORYSJ,Q8W2X2_ORYSJ,A0A0P0VSD0_ORYSJ,A0A0P0VSH9_ORYSJ Os03g0121200 LOC_Os03g02920 Os03g0121200 OSNPB_030121200,prx34 Os03g0121300 OJ1705B08.7 OsJ_09211 OSNPB_030121300,OSJNBb0060I05.5 OSJNBa0040D23.2 prx128 LOC_Os10g39170 Os10g0536700 OSNPB_100536700,Os03g0121200 OSNPB_030121200,Os03g0121300 OSNPB_030121300 ENOG411DU9M TTL F4JRR5,A0A1P8B4G0 TTL_ARATH,A0A1P8B4G0_ARATH TITAN-like protein,Coiled coil protein DISRUPTION PHENOTYPE: Aborted seed development. Embryos arrested at the globular to heart stage transition and defective endosperm development with multi-nucleolated endosperm cells. {ECO:0000269|PubMed:22991160}. FUNCTION: Key regulator for endosperm and embryo nuclear divisions. {ECO:0000269|PubMed:22991160}. MISCELLANEOUS: At least nine differentially spliced transcript isoforms are produced. Full-length isoforms, but not the truncated ones lacking the C-terminal domain, are able to rescue disruption mutants (PubMed:22991160). {ECO:0000305|PubMed:22991160}. 47520,47115 TITAN-like protein,Coiled coil protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; embryo development ending in seed dormancy [GO:0009793]; endosperm development [GO:0009960] TISSUE SPECIFICITY: Expressed in cotyledons, stems, veins of sepals and stigmas, and actively dividing tissues such as shoot apical meristem, root tip and emerging trus leaves. Weak expression in petals and anthers, and not detected in mature leaves. In seeds, expressed in both the endosperm and embryo. {ECO:0000269|PubMed:22991160}. locus:2117363; AT4G24900 Inherit from euNOG: coiled-coil domain containing 84 Os09g0506900 protein (cDNA clone:J013073G03, full insert sequence),Os09g0506900 protein (Fragment) B7ECI1,A0A0P0XP31 B7ECI1_ORYSJ,A0A0P0XP31_ORYSJ Os09g0506900 OSNPB_090506900 ENOG411DU9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA G-type lectin S-receptor-like serine threonine-protein kinase Os06g0241100 protein (S-receptor kinase PK3-like),OSJNBb0022F16.11 protein (Os04g0655300 protein),Os07g0141100 protein (Receptor-like kinase TAK33-like protein) (cDNA clone:002-101-G11, full insert sequence),Os11g0294800 protein (Fragment) Q67VH6,Q7XTD4,Q7XIP7,A0A0P0Y1K1 Q67VH6_ORYSJ,Q7XTD4_ORYSJ,Q7XIP7_ORYSJ,A0A0P0Y1K1_ORYSJ Os06g0241100 OSJNBa0001B11.12 OSNPB_060241100,Os04g0655300 Os04g0655300 OsJ_16456 OSJNBb0022F16.11 OSNPB_040655300,OJ1417_E01.135 OJ1351_C05.109 Os07g0141100 OSNPB_070141100,Os11g0294800 OSNPB_110294800 ENOG411DU9K Q5XF35,O65669 Q5XF35_ARATH,O65669_ARATH At4g39820 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein AT4g39820) R-ATH-8876198; 46317,48389 At4g39820 (Tetratricopeptide repeat (TPR)-like superfamily protein),Tetratricopeptide repeat (TPR)-like superfamily protein (Uncharacterized protein AT4g39820) endopeptidase activity [GO:0004175] locus:2135227; AT4G39820 trafficking protein particle complex subunit 12-like Os02g0550400 protein Q6Z0Z6 Q6Z0Z6_ORYSJ Os02g0550400 Os02g0550400 OSJNBa0040I22.36 OSNPB_020550400 P0451A10.24 ENOG411DU9H Q93ZQ9,Q9LQQ6 Q93ZQ9_ARATH,Q9LQQ6_ARATH AT1G07840 protein (Sas10/Utp3/C1D family) (Uncharacterized protein At1g07840),F24B9.6 (Sas10/Utp3/C1D family) 36076,31996 AT1G07840 protein (Sas10/Utp3/C1D family) (Uncharacterized protein At1g07840),F24B9.6 (Sas10/Utp3/C1D family) nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462] locus:2026530; AT1G07840 K14765 U3 small nucleolar ribonucleoprotein protein LCP5 Leucine zipper factor-like (Os01g0911000 protein),Os01g0911000 protein (Fragment) Q5N7Y0,A0A0P0VC00 Q5N7Y0_ORYSJ,A0A0P0VC00_ORYSJ Os01g0911000 Os01g0911000 OsJ_04499 OSNPB_010911000 P0456E05.40 P0470A12.8,Os01g0911000 OSNPB_010911000 ENOG411DU9I GAPCP1,GAPCP2 Q9SAJ6,Q5E924 G3PP1_ARATH,G3PP2_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic (EC 1.2.1.12) (Glyceraldehyde-3-phosphate dehydrogenase of plastid 1) (NAD-dependent glyceraldehydephosphate dehydrogenase chloroplastic 1),Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic (EC 1.2.1.12) (Glyceraldehyde-3-phosphate dehydrogenase of plastid 2) (NAD-dependent glyceraldehydephosphate dehydrogenase chloroplastic 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. Gapcp1 and gapcp2 double mutants have severe dwarf phenotypes with arrested root development and male sterility. Pollen grains show shrunken and collapsed forms and cannot germinate. {ECO:0000269|PubMed:19675149, ECO:0000269|PubMed:20107025}. weaker induction of HSP70A following AZC treatment of the hsfA2 mutant line when compared with wild-type FUNCTION: Involved in plastidial glycolytic pathway and plays a specific role in glycolytic energy production in non-green plastids and chloroplasts. Essential for breakdown of starch to form sucrose for export to non-photosynthetic tissues, and to generate primary metabolites for anabolic pathways such as fatty acid and amino acid synthesis. Plays an important role in plant development by providing substrates for the phosphorylated pathway of serine biosynthesis in roots. Plays a crucial role in pollen development. Functionally redundant with GAPCP2. {ECO:0000269|PubMed:19675149, ECO:0000269|PubMed:20107025}.,FUNCTION: Involved in plastidial glycolytic pathway and plays a specific role in glycolytic energy production in non-green plastids and chloroplasts. Essential for breakdown of starch to form sucrose for export to non-photosynthetic tissues, and to generate primary metabolites for anabolic pathways such as fatty acid and amino acid synthesis. Plays an important role in plant development by providing substrates for the phosphorylated pathway of serine biosynthesis in roots. Plays a crucial role in pollen development. Functionally redundant with GAPCP1. {ECO:0000269|PubMed:19675149, ECO:0000269|PubMed:20107025}. MISCELLANEOUS: Plants contain three types of GAPDH: NAD-dependent cytosolic forms which participate in glycolysis, NAD-dependent chloroplastic forms which participate in plastidic glycolysis and NADP-dependent chloroplastic forms which participate in the photosynthetic reductive pentose phosphate pathway (Calvin-Benson cycle). All the forms are encoded by distinct genes. R-ATH-70171;R-ATH-70263; 1.2.1.12; 1.2.1.12 44831,44846 Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic (EC 1.2.1.12) (Glyceraldehyde-3-phosphate dehydrogenase of plastid 1) (NAD-dependent glyceraldehydephosphate dehydrogenase chloroplastic 1),Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic (EC 1.2.1.12) (Glyceraldehyde-3-phosphate dehydrogenase of plastid 2) (NAD-dependent glyceraldehydephosphate dehydrogenase chloroplastic 2) chloroplast stroma [GO:0009570]; membrane [GO:0016020]; plastid [GO:0009536]; copper ion binding [GO:0005507]; glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [GO:0004365]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; zinc ion binding [GO:0008270]; amino acid homeostasis [GO:0080144]; anther wall tapetum development [GO:0048658]; carbohydrate metabolic process [GO:0005975]; glucose metabolic process [GO:0006006]; glycolytic process [GO:0006096]; pollen development [GO:0009555]; primary root development [GO:0080022]; response to cytokinin [GO:0009735],chloroplast stroma [GO:0009570]; plastid [GO:0009536]; glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [GO:0004365]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; amino acid homeostasis [GO:0080144]; carbohydrate metabolic process [GO:0005975]; glucose metabolic process [GO:0006006]; glycolytic process [GO:0006096]; primary root development [GO:0080022] TISSUE SPECIFICITY: Expressed in shoot and root vasculature, leaf veins and vascular tissue of flowers and siliques. {ECO:0000269|PubMed:15533878, ECO:0000269|PubMed:19675149}.,TISSUE SPECIFICITY: Expressed in shoot and root vasculature, leaf veins and vascular tissue of flowers and siliques. {ECO:0000269|PubMed:19675149}. locus:2206435;,locus:2032810; AT1G79530,AT1G16300 glyceraldehyde-3-phosphate dehydrogenase Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.-),Os02g0171100 protein Q6H703,Q655W2,A0A0P0VFF6 Q6H703_ORYSJ,Q655W2_ORYSJ,A0A0P0VFF6_ORYSJ Os02g0171100 OJ1116_A06.36 OsJ_05558 OSNPB_020171100 P0030G02.26,Os06g0666600 Os06g0666600 OSNPB_060666600 P0637D03.25,Os02g0171100 OSNPB_020171100 ENOG411DU9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family Os06g0633800 protein (Putative system A transporter isoform 2) (cDNA clone:J033042H02, full insert sequence),Os02g0191300 protein (Putative amino acid transporter A1) (cDNA clone:J023027D15, full insert sequence) Q67VL0,Q6YUT5 Q67VL0_ORYSJ,Q6YUT5_ORYSJ Os06g0633800 OsJ_22066 OSNPB_060633800 P0505A04.37,Os02g0191300 OsJ_05707 OSJNBb0031B09.32 OSNPB_020191300 P0453H10.7 ENOG411DU9E PP2A1,PP2A4 O81865,Q9C8U9 P2A01_ARATH,P2A04_ARATH Protein PHLOEM PROTEIN 2-LIKE A1 (AtPP2-A1),Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 (AtPP2-A4) 28102,19168 Protein PHLOEM PROTEIN 2-LIKE A1 (AtPP2-A1),Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 (AtPP2-A4) carbohydrate binding [GO:0030246]; proteoglycan binding [GO:0043394]; response to insect [GO:0009625],carbohydrate binding [GO:0030246] TISSUE SPECIFICITY: Vascular tissues, specifically in phloem companion cell-sieve element complexes. {ECO:0000269|PubMed:12529520}. locus:2133945;,locus:2203837; AT4G19840,AT1G33920 Protein PHLOEM protein 2-LIKE Os01g0158400 protein (Putative lectin 2) (cDNA clone:001-121-G12, full insert sequence) Q5ZEM1 Q5ZEM1_ORYSJ Os01g0158400 OSNPB_010158400 P0041E11.2 ENOG411DU9B LHCA1 Q01667,F4JE46,A8MS75,F4JE43 CAB6_ARATH,F4JE46_ARATH,A8MS75_ARATH,F4JE43_ARATH Chlorophyll a-b binding protein 6, chloroplastic (LHCI-730) (LHCII type III CAB-6) (Light-harvesting complex protein Lhca1),Chlorophyll a-b binding protein, chloroplastic FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000269|PubMed:21806943}.,FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. MISCELLANEOUS: Light emission at 684 nm upon excitation at 410 and 470 nm. {ECO:0000269|PubMed:15563470}. 25996,17541,23262,22081 Chlorophyll a-b binding protein 6, chloroplastic (LHCI-730) (LHCII type III CAB-6) (Light-harvesting complex protein Lhca1),Chlorophyll a-b binding protein, chloroplastic chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I [GO:0009522]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein domain specific binding [GO:0019904]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to cold [GO:0009409]; response to far red light [GO:0010218]; response to high light intensity [GO:0009644]; response to low light intensity stimulus [GO:0009645]; response to red light [GO:0010114],chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosystem II [GO:0009523]; chlorophyll binding [GO:0016168]; photosynthesis, light harvesting [GO:0009765]; protein-chromophore linkage [GO:0018298] locus:2082717; AT3G54890 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic Q5ZA98 Q5ZA98_ORYSJ Os06g0320500 Os06g0320500 OsJ_21156 OSNPB_060320500 P0578B12.4 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DU9A CPSF73-I Q9C952 CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit I) (AtCPSF73-I) (CPSF 73 kDa subunit I) FUNCTION: Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. May function as mRNA 3'-end-processing endonuclease and also be involved in the histone 3'-end pre-mRNA processing. {ECO:0000303|PubMed:19748916}. MISCELLANEOUS: CPSF73-I and CPSF73-II are not functionally redundant, but both are essential in plant development. Knockdown or overexpression of CPSF73-I are lethal. R-ATH-72163;R-ATH-77595; 3.1.27.- 77365 Cleavage and polyadenylation specificity factor subunit 3-I (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit I) (AtCPSF73-I) (CPSF 73 kDa subunit I) nucleus [GO:0005634]; nuclease activity [GO:0004518]; mRNA processing [GO:0006397]; snRNA processing [GO:0016180] TISSUE SPECIFICITY: Highly expressed in carpels. Also detected in seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16897494}. locus:2206076; AT1G61010 Cleavage and polyadenylation specificity factor Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed (Os03g0852900 protein) (Putative cleavage and polyadenylation specifity factor) (Putative cleavage and polyadenylation specifity factor protein) Q84JJ2 Q84JJ2_ORYSJ Os03g0852900 LOC_Os03g63590 Os03g0852900 Os03g63590 OsJ_13407 OSJNBa0015N08.31 OSNPB_030852900 ENOG411DZ7M F4F15.90 Q9SV06 Q9SV06_ARATH ARM repeat superfamily protein (Uncharacterized protein At3g51980) (Uncharacterized protein F4F15.90) 42530 ARM repeat superfamily protein (Uncharacterized protein At3g51980) (Uncharacterized protein F4F15.90) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2083800; AT3G51980 nucleotide exchange factor NA NA NA NA NA NA NA ENOG411EIVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0440850 protein A0A0P0XN70 A0A0P0XN70_ORYSJ Os09g0440850 OSNPB_090440850 ENOG411EIVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycine rich protein family NA NA NA NA NA NA NA ENOG411EDD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EDD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Expressed protein (Os11g0606100 protein),Os11g0606200 protein (Fragment) Q2R1G2,A0A0P0Y4Z1 Q2R1G2_ORYSJ,A0A0P0Y4Z1_ORYSJ LOC_Os11g39280 Os11g0606100 OsJ_26586 OSNPB_110606100,Os11g0606200 OSNPB_110606200 ENOG411EDD5 T15D22.9,GAT1_2.1 Q9M9Q1,Q8H0Z4 Q9M9Q1_ARATH,Q8H0Z4_ARATH Class I glutamine amidotransferase-like superfamily protein (T15D22.9 protein) (Uncharacterized protein At1g15045),Class I glutamine amidotransferase-like superfamily protein (Uncharacterized protein At1g15045) FUNCTION: Putative glutamine amidotransferase that represses shoot branching. May act as a factor that links nitrogen stress response and branching control. May activate strigolactones by amidation, or represent a new pathway for repression of shoot branching. {ECO:0000269|PubMed:22885937}. 38006,45363 Class I glutamine amidotransferase-like superfamily protein (T15D22.9 protein) (Uncharacterized protein At1g15045),Class I glutamine amidotransferase-like superfamily protein (Uncharacterized protein At1g15045) hydrolase activity [GO:0016787]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541],hydrolase activity [GO:0016787]; transferase activity [GO:0016740]; glutamine metabolic process [GO:0006541]; regulation of secondary shoot formation [GO:2000032] locus:2196174; AT1G15040 Peptidase C26 NA NA NA NA NA NA NA ENOG411EDD4 GGPP4 Q9SLG2 GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 (GGPP synthase 4) (GGPS4) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 4) (Dimethylallyltranstransferase 4) (EC 2.5.1.1) (Farnesyl diphosphate synthase 4) (Farnesyltranstransferase 4) (EC 2.5.1.29) (Geranyltranstransferase 4) (EC 2.5.1.10) FUNCTION: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. PATHWAY: Isoprenoid biosynthesis; farnesyl diphosphate biosynthesis; farnesyl diphosphate from geranyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranyl diphosphate biosynthesis; geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate: step 1/1.; PATHWAY: Isoprenoid biosynthesis; geranylgeranyl diphosphate biosynthesis; geranylgeranyl diphosphate from farnesyl diphosphate and isopentenyl diphosphate: step 1/1. ARA:AT2G18640-MONOMER;MetaCyc:AT2G18640-MONOMER; 2.5.1.-; 2.5.1.1; 2.5.1.29; 2.5.1.10 40936 Geranylgeranyl pyrophosphate synthase 4 (GGPP synthase 4) (GGPS4) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase 4) (Dimethylallyltranstransferase 4) (EC 2.5.1.1) (Farnesyl diphosphate synthase 4) (Farnesyltranstransferase 4) (EC 2.5.1.29) (Geranyltranstransferase 4) (EC 2.5.1.10) endoplasmic reticulum [GO:0005783]; dimethylallyltranstransferase activity [GO:0004161]; farnesyltranstransferase activity [GO:0004311]; geranyltranstransferase activity [GO:0004337]; metal ion binding [GO:0046872]; carotenoid biosynthetic process [GO:0016117]; farnesyl diphosphate biosynthetic process [GO:0045337]; geranyl diphosphate biosynthetic process [GO:0033384]; geranylgeranyl diphosphate biosynthetic process [GO:0033386]; isoprenoid biosynthetic process [GO:0008299] TISSUE SPECIFICITY: Faintly expressed in flowers. {ECO:0000269|PubMed:10759500}. locus:2046258; AT2G18640 Polyprenyl synthetase NA NA NA NA NA NA NA ENOG411EDD3 HDF7,STE1 Q9M883,Q39208,A0A1I9LMH5 SC5D2_ARATH,SC5D1_ARATH,A0A1I9LMH5_ARATH Putative Delta(7)-sterol-C5(6)-desaturase 2 (EC 1.14.19.20) (Delta(7)-sterol-C5-desaturase 2) (Delta-7-C-5 sterol desaturase 2) (Homolog of DWF7 protein),Delta(7)-sterol-C5(6)-desaturase 1 (EC 1.14.19.20) (Delta(7)-sterol-C5-desaturase 1) (Delta-7-C-5 sterol desaturase 1) (Protein DWARF 7) (Protein STEROL 1),Fatty acid hydroxylase superfamily protein Dwarf; Low brassinosteroid levels-R. Sangwan-1999 FUNCTION: Involved in the biosynthesis of sitosterol and campesterol, a precursor of growth-promoting brassinosteroids. {ECO:0000269|PubMed:8919915, ECO:0000269|PubMed:9927639}. ARA:AT3G02590-MONOMER;,ARA:AT3G02580-MONOMER; R-ATH-6807047;R-ATH-6807062; 1.14.21.6; 1.14.19.20 33111,33143,23087 Putative Delta(7)-sterol-C5(6)-desaturase 2 (EC 1.14.19.20) (Delta(7)-sterol-C5-desaturase 2) (Delta-7-C-5 sterol desaturase 2) (Homolog of DWF7 protein),Delta(7)-sterol-C5(6)-desaturase 1 (EC 1.14.19.20) (Delta(7)-sterol-C5-desaturase 1) (Delta-7-C-5 sterol desaturase 1) (Protein DWARF 7) (Protein STEROL 1),Fatty acid hydroxylase superfamily protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; C-5 sterol desaturase activity [GO:0000248]; iron ion binding [GO:0005506]; sterol biosynthetic process [GO:0016126],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; sterol biosynthetic process [GO:0016126],integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; lipid biosynthetic process [GO:0008610] locus:2076899;,locus:2076884; AT3G02590,AT3G02580 Fatty acid hydroxylase superfamily NA NA NA NA NA NA NA ENOG411EDD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CACTA En Spm sub-class NA NA NA NA NA NA NA ENOG411EDD1 Q9M0M4,Q9FGK3 MO25M_ARATH,MO25N_ARATH Putative MO25-like protein At4g17270,Putative MO25-like protein At5g47540 R-ATH-6798695; 39651,39457 Putative MO25-like protein At4g17270,Putative MO25-like protein At5g47540 plasma membrane [GO:0005886] locus:2130774;,locus:2168958; AT4G17270,AT5G47540 Mo25-like NA NA NA NA NA NA NA ENOG411EDD0 Q9C827,Q8L828,A0A1P8AV73,F4ICX0,A0A1I9LTK3,F4J1E5 COB22_ARATH,COB23_ARATH,A0A1P8AV73_ARATH,F4ICX0_ARATH,A0A1I9LTK3_ARATH,F4J1E5_ARATH Coatomer subunit beta'-2 (Beta'-coat protein 2) (Beta'-COP 2),Coatomer subunit beta'-3 (Beta'-coat protein 3) (Beta'-COP 3),Coatomer subunit beta' FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.,FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. {ECO:0000256|PIRNR:PIRNR005567}. R-ATH-6807878;R-ATH-6811434; 104467,102476,104220,109771,103107,105011 Coatomer subunit beta'-2 (Beta'-coat protein 2) (Beta'-COP 2),Coatomer subunit beta'-3 (Beta'-coat protein 3) (Beta'-COP 3),Coatomer subunit beta' COPI vesicle coat [GO:0030126]; Golgi membrane [GO:0000139]; structural molecule activity [GO:0005198]; ER to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],COPI-coated vesicle membrane [GO:0030663]; Golgi membrane [GO:0000139]; membrane coat [GO:0030117]; structural molecule activity [GO:0005198]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192],COPI-coated vesicle membrane [GO:0030663]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; membrane coat [GO:0030117]; structural molecule activity [GO:0005198]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2018199;,locus:2093402; AT1G52360,AT3G15980 Coatomer WD associated region NA NA NA NA NA NA NA ENOG411EDD8 NPY3 Q9FN09,B3H667 NPY3_ARATH,B3H667_ARATH BTB/POZ domain-containing protein NPY3 (Protein NAKED PINS IN YUC MUTANTS 3),Phototropic-responsive NPH3 family protein FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses. {ECO:0000250, ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. PATHWAY: Protein modification; protein ubiquitination. 64765,60617 BTB/POZ domain-containing protein NPY3 (Protein NAKED PINS IN YUC MUTANTS 3),Phototropic-responsive NPH3 family protein cell periphery [GO:0071944]; flower development [GO:0009908]; positive gravitropism [GO:0009958]; protein ubiquitination [GO:0016567] TISSUE SPECIFICITY: Expressed in the provascular and vascular systems. Highly expressed in primary root tips. {ECO:0000269|PubMed:19075219, ECO:0000269|PubMed:20833732}. locus:2158182; AT5G67440 naked pins in yuc mutants NA NA NA NA NA NA NA ENOG411EDDG Q9ZUV6 Q9ZUV6_ARATH Enabled-like protein (DUF1635) (Uncharacterized protein At2g28140) 24341 Enabled-like protein (DUF1635) (Uncharacterized protein At2g28140) locus:2046223; AT2G28140 Protein of unknown function (DUF1635) NA NA NA NA NA NA NA ENOG411EDDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Integral membrane protein TerC family NA NA NA NA NA NA NA ENOG411EDDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminopeptidase I zinc metalloprotease (M18) NA NA NA NA NA NA NA ENOG411EDDC GATA13 Q9SKN6 GAT13_ARATH Putative GATA transcription factor 13 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. 33017 Putative GATA transcription factor 13 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154] locus:2057527; AT2G28340 ZnF_GATA NA NA NA NA NA NA NA ENOG411EDDB LOV1,RPP8L4,RPP8L2,RPP8L3,RPP8 O04093,Q9FJK8,P0C8S1,Q9FJB5,Q8W4J9,A0A1P8AT99,F4JL04 LOV1A_ARATH,RP8L4_ARATH,RP8L2_ARATH,RP8L3_ARATH,RPP8_ARATH,A0A1P8AT99_ARATH,F4JL04_ARATH Putative inactive disease susceptibility protein LOV1 (Disease resistance protein RPP8-like protein 1) (Protein LONG VEGETATIVE PHASE1),Probable disease resistance RPP8-like protein 4,Probable disease resistance RPP8-like protein 2,Disease resistance RPP8-like protein 3,Disease resistance protein RPP8 (Resistance to Peronospora parasitica protein 8),NB-ARC domain-containing disease resistance protein,RNI-like superfamily protein Reduced sensitivity to victorin. Resistant to victorin (fungal toxin); Susceptible to disease-T. Wolpert-2008,Altered response to fungal infection-J. Dangl-1998 FUNCTION: Potential disease resistance protein.,FUNCTION: Disease resistance protein.,FUNCTION: Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Triggers resistance to turnip crinkle virus (TCV) via a SAG101-dependent pathway. {ECO:0000269|PubMed:22072959, ECO:0000269|PubMed:9811794}. MISCELLANEOUS: In cv. Columbia and cv. Landsberg erecta, RPP8 specifically recognizes the Emco5 avirulence protein from Hyaloperonospora parasitica, while it is not the case in cv. Di-17, where it confers resistance to Turnip Crinkle Virus upon recognition of the viral capsid protein. 83685,104448,104063,103767,104682,64002,21588 Putative inactive disease susceptibility protein LOV1 (Disease resistance protein RPP8-like protein 1) (Protein LONG VEGETATIVE PHASE1),Probable disease resistance RPP8-like protein 4,Probable disease resistance RPP8-like protein 2,Disease resistance RPP8-like protein 3,Disease resistance protein RPP8 (Resistance to Peronospora parasitica protein 8),NB-ARC domain-containing disease resistance protein,RNI-like superfamily protein plasma membrane [GO:0005886]; ADP binding [GO:0043531]; defense response to fungus [GO:0050832]; response to molecule of fungal origin [GO:0002238]; signal transduction [GO:0007165],plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; defense response [GO:0006952]; signal transduction [GO:0007165],plasma membrane [GO:0005886]; ADP binding [GO:0043531]; ATP binding [GO:0005524]; nucleotide binding [GO:0000166]; cellular response to salicylic acid stimulus [GO:0071446]; defense response [GO:0006952]; defense response to virus [GO:0051607]; plant-type hypersensitive response [GO:0009626]; positive regulation of defense response to virus by host [GO:0002230]; response to absence of light [GO:0009646]; response to blue light [GO:0009637]; response to light stimulus [GO:0009416]; response to oomycetes [GO:0002239]; response to other organism [GO:0051707]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611]; signal transduction [GO:0007165],ADP binding [GO:0043531]; defense response [GO:0006952] TISSUE SPECIFICITY: Mostly expressed in leaves, and, to a lower extent, in roots. {ECO:0000269|PubMed:20831409}. locus:2197409;,locus:2152536;,locus:2169523;,locus:2176486;,locus:504955439; AT1G10920,AT5G48620,AT1G53350,AT5G35450,AT5G43470,AT4G16095 NB-ARC domain NA NA NA NA NA NA NA ENOG411EDDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleoside transporter Os07g0557200 protein (Putative equilibrative nucleoside transporter ENT8 splice variant) (cDNA clone:J033024P16, full insert sequence) Q69S28 Q69S28_ORYSJ Os07g0557200 Os07g0557200 OSJNBa0058I18.41 OSNPB_070557200 ENOG411EDDN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: oxidoreductase 2OG-Fe(II) oxygenase family protein NA NA NA NA NA NA NA ENOG411EDDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EDDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os11g0303800 protein (Ribosomal protein-like) (Transposon protein, putative, Pong sub-class, expressed) (Transposon protein, putative, ping/pong/SNOOPY sub-class) (cDNA clone:J013161A10, full insert sequence),Os05g0501001 protein Q6EQL9,A0A0P0WPF7 Q6EQL9_ORYSJ,A0A0P0WPF7_ORYSJ Os11g0303800 LOC_Os11g19864 LOC_Os11g19870 OSJNBa0042H24.31 OSNPB_110303800,Os05g0501001 OSNPB_050501001 ENOG411EDDI TTL2 F4IXE4 TTL2_ARATH TPR repeat-containing thioredoxin TTL2 (Tetratricopeptide repeat thioredoxin-like 2) DISRUPTION PHENOTYPE: Decreased efficiency of the male gametophyte transmission and reduced fertility. {ECO:0000269|PubMed:22232384}. FUNCTION: Plays a role in the transmission of male gametophyte. {ECO:0000269|PubMed:22232384}. 79754 TPR repeat-containing thioredoxin TTL2 (Tetratricopeptide repeat thioredoxin-like 2) cell [GO:0005623]; cell redox homeostasis [GO:0045454] TISSUE SPECIFICITY: Specifically expressed in pollen grains. {ECO:0000269|PubMed:22232384}. AT3G14950 Tetratricopetide-repeat Thioredoxin-Like NA NA NA NA NA NA NA ENOG411EDDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os02g0132900 protein,Os02g0132700 protein,Os02g0130800 protein,Os02g0131900 protein,Os02g0132800 protein A3A2U9,Q6Z6J2,A0A0P0VEH0,A0A0N7KEM4,A0A0P0VED1 A3A2U9_ORYSJ,Q6Z6J2_ORYSJ,A0A0P0VEH0_ORYSJ,A0A0N7KEM4_ORYSJ,A0A0P0VED1_ORYSJ Os02g0132900 OsJ_05267 OSNPB_020132900,Os02g0132700 OsJ_05264 OSNPB_020132700 P0030G11.7,Os02g0130800 OSNPB_020130800,Os02g0131900 OSNPB_020131900,Os02g0132800 OSNPB_020132800 ENOG411EDDW F4JDY6,F4J6S4 F4JDY6_ARATH,F4J6S4_ARATH Cysteine/Histidine-rich C1 domain family protein 70411,67911 Cysteine/Histidine-rich C1 domain family protein metal ion binding [GO:0046872] locus:504955646;,locus:2077117; AT3G48400,AT3G45840 C1 domain NA NA NA NA NA NA NA ENOG411EDDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os01g0512100 protein (Putative Altered Response to Gravity) (cDNA clone:J023047L09, full insert sequence),Os03g0262500 protein (Fragment) Q5QMV0,Q0DT95 Q5QMV0_ORYSJ,Q0DT95_ORYSJ Os01g0512100 OSJNBa0054L14.19 OSNPB_010512100 P0504D03.5,Os03g0262500 OSNPB_030262500 ENOG411EDDU F4K185 F4K185_ARATH Fasciclin-like arabinogalactan family protein 30987 Fasciclin-like arabinogalactan family protein locus:2146789; AT5G26730 Has 15 Blast hits to 15 proteins in 4 species Archae - 0 NA NA NA NA NA NA NA ENOG411EDDT MAC9.3 Q9FLT6 Q9FLT6_ARATH Dbj|BAA95751.1 (Uncharacterized protein At5g61720) 43169 Dbj|BAA95751.1 (Uncharacterized protein At5g61720) locus:2159243; AT5G61720 Protein of unknown function (DUF1216) NA NA NA NA NA NA NA ENOG411EDDS O64469,O64468,A0A1P8AY96 GDL37_ARATH,GDL36_ARATH,A0A1P8AY96_ARATH GDSL esterase/lipase At2g19060 (EC 3.1.1.-) (Extracellular lipase At2g19060),GDSL esterase/lipase At2g19050 (EC 3.1.1.-) (Extracellular lipase At2g19050),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT2G19060-MONOMER;,ARA:AT2G19050-MONOMER; 3.1.1.- 38724,38577,31145 GDSL esterase/lipase At2g19060 (EC 3.1.1.-) (Extracellular lipase At2g19060),GDSL esterase/lipase At2g19050 (EC 3.1.1.-) (Extracellular lipase At2g19050),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2059098;,locus:2059078; AT2G19060,AT2G19050 GDSL-motif lipase hydrolase family protein NA NA NA NA NA NA NA ENOG411EDDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411EDDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Retrotransposon protein Os03g0189500 protein,Os10g0351414 protein,Os04g0371500 protein,Os10g0351300 protein,Os04g0382550 protein,Os10g0131701 protein (Fragment) A3AEZ0,A0A0P0XT65,A0A0P0W953,A0A0P0XTD1,A0A0P0W9Q7,A0A0N7KRE2 A3AEZ0_ORYSJ,A0A0P0XT65_ORYSJ,A0A0P0W953_ORYSJ,A0A0P0XTD1_ORYSJ,A0A0P0W9Q7_ORYSJ,A0A0N7KRE2_ORYSJ Os03g0189500 OsJ_09716 OSNPB_030189500,Os10g0351414 OSNPB_100351414,Os04g0371500 OSNPB_040371500,Os10g0351300 OSNPB_100351300,Os04g0382550 OSNPB_040382550,Os10g0131701 OSNPB_100131701 ENOG411EDDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MULE transposase domain NA NA NA NA NA NA NA ENOG411EDDZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os02g0159800 protein (cDNA clone:002-171-H06, full insert sequence) Q6ETH7 Q6ETH7_ORYSJ Os02g0159800 Os02g0159800 B1103G11.31 OsJ_05460 OSNPB_020159800 ENOG411EDDY GT12 O48842,A0A1P8B0M3 GT12_ARATH,A0A1P8B0M3_ARATH Probable xyloglucan galactosyltransferase GT12 (EC 2.4.1.-) (Glycosyltransferase 12) (AtGT12),Exostosin family protein FUNCTION: Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone. Involved in the galactosylation of hemicellulose xyloglucan. {ECO:0000250|UniProtKB:F4K6F1}. 2.4.1.- 59135,59395 Probable xyloglucan galactosyltransferase GT12 (EC 2.4.1.-) (Glycosyltransferase 12) (AtGT12),Exostosin family protein Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757] TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000269|PubMed:15020758}. locus:2046372; AT2G32750 exostosin family NA NA NA NA NA NA NA ENOG411EDDX FLA16,FLA15 Q8RWC5,Q9FT45,A0A1I9LLN6 FLA16_ARATH,FLA15_ARATH,A0A1I9LLN6_ARATH Fasciclin-like arabinogalactan protein 16,Fasciclin-like arabinogalactan protein 15,FASCICLIN-like arabinogalactan protein 15 FUNCTION: May be a cell surface adhesion protein. 49100,48073,54271 Fasciclin-like arabinogalactan protein 16,Fasciclin-like arabinogalactan protein 15,FASCICLIN-like arabinogalactan protein 15 extracellular region [GO:0005576] locus:2039270;,locus:2100564; AT2G35860,AT3G52370 FASCICLIN-like arabinogalactan protein 15 precursor NA NA NA NA NA NA NA ENOG411EIV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIV9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E77Y Q7XA76 Q7XA76_ARATH At5g58375 (Methyltransferase-related protein) 9320 At5g58375 (Methyltransferase-related protein) methyltransferase activity [GO:0008168] locus:505006699; AT5G58375 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E77X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0140900 protein Q9SNS3 Q9SNS3_ORYSJ Os06g0140900 OsJ_20071 OSNPB_060140900 P0535G04.1 ENOG411E77Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E77U Q9S9T6 FB220_ARATH F-box protein At4g05010 18970 F-box protein At4g05010 locus:2138366; AT4G05010 f-box family NA NA NA NA NA NA NA ENOG411E77T LIMYB Q9FFJ8 LIMYB_ARATH L10-interacting MYB domain-containing protein DISRUPTION PHENOTYPE: Increased begomovirus infection symptoms. Up-regulation of the ribosomal protein genes. {ECO:0000269|PubMed:25707794}. FUNCTION: Transcriptional repressor that associates with ribosomal protein promoters. {ECO:0000269|PubMed:25707794}. 52690 L10-interacting MYB domain-containing protein nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, leaves, roots, stems and flowers. {ECO:0000269|PubMed:25707794}. locus:2166464; AT5G05800 NA Os03g0623000 protein,Os04g0243400 protein (Fragment),Os03g0328200 protein,Os11g0210400 protein,Os04g0141300 protein,Os10g0187701 protein A3C4Y8,A0A0P0W7W3,A0A0N7KH72,A0A0P0Y0Y4,A0A0P0W6Z4,A0A0P0XSZ4 A3C4Y8_ORYSJ,A0A0P0W7W3_ORYSJ,A0A0N7KH72_ORYSJ,A0A0P0Y0Y4_ORYSJ,A0A0P0W6Z4_ORYSJ,A0A0P0XSZ4_ORYSJ Os03g0623000 OsJ_31597 OSNPB_030623000,Os04g0243400 OSNPB_040243400,Os03g0328200 OSNPB_030328200,Os11g0210400 OSNPB_110210400,Os04g0141300 OSNPB_040141300,Os10g0187701 OSNPB_100187701 ENOG411E77W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0050O03.2 protein (Os04g0115900 protein) Q7XT20 Q7XT20_ORYSJ Os04g0115900 OSJNBb0050O03.2 OSNPB_040115900 ENOG411E77V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E77Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E77P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Os01g0727500 protein (cDNA clone:002-120-H09, full insert sequence) (cDNA clone:002-125-B09, full insert sequence) Q5JM47 Q5JM47_ORYSJ P0042A10.38-1 P0456A01.2-1 Os01g0727500 OsJ_03325 OSNPB_010727500 ENOG411E77S LCR75 P82784 DEF07_ARATH Defensin-like protein 7 (Low-molecular-weight cysteine-rich protein 75) (Protein LCR75) (Low-molecular-weight cysteine-rich protein 79) (Protein LCR79) 9304 Defensin-like protein 7 (Low-molecular-weight cysteine-rich protein 75) (Protein LCR75) (Low-molecular-weight cysteine-rich protein 79) (Protein LCR79) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] TISSUE SPECIFICITY: Expressed in stems, roots, rosette leaves and flower buds. {ECO:0000269|PubMed:11437247}. locus:1009023179; AT2G31957 Gamma-thionin family Os04g0189400 protein (cDNA clone:J023085D09, full insert sequence),Os04g0189800 protein Q0JEX4,A0A0P0W773 Q0JEX4_ORYSJ,A0A0P0W773_ORYSJ Os04g0189400 Os04g0189400 OSNPB_040189400,Os04g0189800 OSNPB_040189800 ENOG411E77R ZPR4,ZPR3 Q56WL5,Q9LXI8 ZPR4_ARATH,ZPR3_ARATH Protein LITTLE ZIPPER 4,Protein LITTLE ZIPPER 3 DISRUPTION PHENOTYPE: Zpr3 and zpr4 double mutants exhibit homeotic transformation and ectopic meristem activity. {ECO:0000269|PubMed:18408069}.,DISRUPTION PHENOTYPE: No visible phenotype during the vegetative growth. Disrupted activities of the shoot apical meristem and/or axillary meristems after the transition to reproductive growth. Zpr3 and zpr4 double mutants exhibit homeotic transformation and ectopic meristem activity. {ECO:0000269|PubMed:18408069}. Extra cotyledons. Only three or four true rosette leaves produced initially then after a pause of a few days leaves are produced at random positions. These leaves are often produced from the adaxial side of leaf / cotyledon bases instead of the SAM. >50 rosette leaves produced at maturity. Altered phyllotaxy. SAM has irregular appearance. Some radially symmetric organs.,WT-like vegetative growth. Absent or short internodes between siliques. Occasionally two or more secondary inflorescences developed at the cauline leaf axils. Dwarf-C. Park-2008 FUNCTION: Competitive inhibitor of the HD-ZIPIII transcription factors in shoot apical meristem (SAM) development (Probable). Acts by forming non-functional heterodimers (Probable). Part of a negative feedback loop (Probable). Essential for proper functioning of stem cells in the SAM (PubMed:18408069). {ECO:0000269|PubMed:18408069, ECO:0000305|PubMed:18408069}.,FUNCTION: Competitive inhibitor of the HD-ZIPIII transcription factors in shoot apical meristem (SAM) development. Acts by forming non-functional heterodimers. Part of a negative feedback loop. Involved in SAM development and lateral organ patterning. Essential for proper functioning of stem cells in the SAM. {ECO:0000269|PubMed:18408069}. 8203,7749 Protein LITTLE ZIPPER 4,Protein LITTLE ZIPPER 3 regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; adaxial/abaxial axis specification [GO:0009943]; leaf shaping [GO:0010358]; leaf vascular tissue pattern formation [GO:0010305]; regulation of meristem growth [GO:0010075]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the adaxial epidermis of the cotyledons and leaves, and in the vascular cylinder of wild-type torpedo stage embryos. Confined in the central zone and the organizing center in the shoot apical meristem. {ECO:0000269|PubMed:18055602}. locus:2083283; AT2G36307,AT3G52770 zpr3 zpr3 (little zipper 3) Os04g0411200 protein Q0JDE1 Q0JDE1_ORYSJ Os04g0411200 Os04g0411200 OSNPB_040411200 ENOG411E77M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DHHC palmitoyltransferase NA NA NA NA NA NA NA ENOG411E77N Q9MAI8,Q5BPR0 Q9MAI8_ARATH,Q5BPR0_ARATH F12M16.3 (Membrane-associated kinase regulator),TPRXL 33590,25345 F12M16.3 (Membrane-associated kinase regulator),TPRXL kinase activity [GO:0016301] locus:4010713543;,locus:2087080; AT1G53163,AT3G15250 Inherit from euNOG: serine threonine kinase NA NA NA NA NA NA NA ENOG411E77I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0575000 protein (Fragment) A0A0P0WQM6 A0A0P0WQM6_ORYSJ Os05g0575000 OSNPB_050575000 ENOG411E77H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0533800 protein Q6EPY3 Q6EPY3_ORYSJ Os02g0533800 B1136H02.6 OsJ_07012 OSNPB_020533800 P0605D08.39 ENOG411E77K RPP2B,RPP2A,RPP2D Q9SLF7,P51407,Q9LXM8,F4IGR4,F4IGR5,F4IGR3 RLA22_ARATH,RLA21_ARATH,RLA24_ARATH,F4IGR4_ARATH,F4IGR5_ARATH,F4IGR3_ARATH 60S acidic ribosomal protein P2-2,60S acidic ribosomal protein P2-1,60S acidic ribosomal protein P2-4,60S acidic ribosomal protein family FUNCTION: Plays an important role in the elongation step of protein synthesis.,FUNCTION: Plays an important role in the elongation step of protein synthesis. {ECO:0000250}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 11444,11452,11015,13031,12707,10244 60S acidic ribosomal protein P2-2,60S acidic ribosomal protein P2-1,60S acidic ribosomal protein P2-4,60S acidic ribosomal protein family chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; response to cold [GO:0009409]; ribosome assembly [GO:0042255]; translational elongation [GO:0006414],cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; translational elongation [GO:0006414],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; translational elongation [GO:0006414],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleus [GO:0005634]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cold [GO:0009409]; ribosome assembly [GO:0042255]; translational elongation [GO:0006414],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translational elongation [GO:0006414] locus:2042062;,locus:2075993;,locus:2042052; AT2G27710,AT2G27720,AT3G44590 60S acidic ribosomal protein Os05g0445500 protein (Fragment) A0A0P0WMY2,A0A0P0WMX1 A0A0P0WMY2_ORYSJ,A0A0P0WMX1_ORYSJ Os05g0445500 OSNPB_050445500 ENOG411E77J SIB2 O80669 SIB2_ARATH Sigma factor binding protein 2, chloroplastic (Sigma factor binding protein II) (VQ motif-containing protein 16) (AtVQ16) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have increased susceptibility to the necrotrophic fungal pathogen B.cinerea. {ECO:0000269|PubMed:21990940}. FUNCTION: Functions as activator of WRKY33 in plant defense against necrotrophic pathogens by stimulating the DNA-binding activity of WRKY33. {ECO:0000269|PubMed:21990940}. 15570 Sigma factor binding protein 2, chloroplastic (Sigma factor binding protein II) (VQ motif-containing protein 16) (AtVQ16) chloroplast [GO:0009507]; nucleus [GO:0005634]; positive regulation of sequence-specific DNA binding transcription factor activity [GO:0051091] locus:2063270; AT2G41180 VQ motif NA NA NA NA NA NA NA ENOG411E77E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E77D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0407400 protein (Seed length and weight protein long form for short seed) C6L686 C6L686_ORYSJ GS3 Os03g0407400 OSNPB_030407400 ENOG411E77G MEE6.3 Q9FLN3 Q9FLN3_ARATH At5g40960 (Emb|CAB62355.1) (Transmembrane protein, putative (DUF 3339)) 7479 At5g40960 (Emb|CAB62355.1) (Transmembrane protein, putative (DUF 3339)) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2162981; AT5G40960 Protein of unknown function (DUF3339) Os01g0849500 protein (cDNA clone:002-174-G09, full insert sequence) Q0JHQ5 Q0JHQ5_ORYSJ Os01g0849500 Os01g0849500 OsJ_04083 OSNPB_010849500 ENOG411E77F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family UPF0047 NA NA NA NA NA NA NA ENOG411E77A CCI2 Q93VQ7,Q9SZK6 Q93VQ7_ARATH,Q9SZK6_ARATH AT4G38060 protein (AT4g38060/F20D10_180) (Uncharacterized protein At4g38060),Putative protei (Uncharacterized protein AT4g38060) 15131,13745 AT4G38060 protein (AT4g38060/F20D10_180) (Uncharacterized protein At4g38060),Putative protei (Uncharacterized protein AT4g38060) locus:2120978; AT4G38060 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E77C VQ20 Q9LS54 VQ20_ARATH VQ motif-containing protein 20 (AtVQ20) FUNCTION: May function as negative regulator of plant defense. {ECO:0000305|PubMed:22535423}. MISCELLANEOUS: Plants over-expressing VQ20 display enhanced disease symptoms after infection of either the necrotrophic fungal pathogen B.cinerea or the bacterial pathogen P.syringae. {ECO:0000269|PubMed:22535423}. 31112 VQ motif-containing protein 20 (AtVQ20) nucleus [GO:0005634]; defense response [GO:0006952] locus:2095047; AT3G18360 VQ motif NA NA NA NA NA NA NA ENOG411E77B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E779 F3L17.130 Q9SV14 Q9SV14_ARATH AT4g31560 (AT4g31560/F3L17_130) (High chlorophyll fluorescence 153) (Uncharacterized protein At4g31560) (Uncharacterized protein F3L17.130) high chlorophyll fluorescence mutant. impaired electron transfer between PSII and PSI. reduced cytochrome b6f complex level. Seedling lethal without exogenous sucrose-K. Meierhoff-2006 14701 AT4g31560 (AT4g31560/F3L17_130) (High chlorophyll fluorescence 153) (Uncharacterized protein At4g31560) (Uncharacterized protein F3L17.130) thylakoid membrane [GO:0042651]; cytochrome b6f complex assembly [GO:0010190] locus:2125249; AT4G31560 NA NA NA NA NA NA NA NA ENOG411E778 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0733000 protein),Os01g0654800 protein Q6AVH7,A0A0P0V611 Q6AVH7_ORYSJ,A0A0P0V611_ORYSJ OSJNBa0079G12.7 LOC_Os03g52280 Os03g0733000 OsJ_12463 OSNPB_030733000,Os01g0654800 OSNPB_010654800 ENOG411E775 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor NA NA NA NA NA NA NA ENOG411E774 MBD7 Q9FJF4 MBD7_ARATH Methyl-CpG-binding domain-containing protein 7 (AtMBD7) (MBD07) (Methyl-CpG-binding protein MBD7) DISRUPTION PHENOTYPE: DNA hypermethylation and transgene silencing phenotype. {ECO:0000269|PubMed:25684209}. FUNCTION: Transcriptional regulator that binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides. May directly affect chromatin structure by inducing intra- and inter- chromatin compaction via bridging over multiple methylated CpG sites. Acts as an anti-silencing factor that prevents DNA hypermethylation and gene repression (PubMed:25684209). Requires high mCG density for binding (PubMed:25684209, PubMed:25593350). Recognizes preferentially mCGs located in transposable elements (PubMed:25684209, PubMed:25593350). Required for active DNA demethylation (PubMed:25593350). Prefers to target genomic loci around chromocenters (PubMed:25593350). {ECO:0000269|PubMed:12787239, ECO:0000269|PubMed:18211904, ECO:0000269|PubMed:25593350, ECO:0000269|PubMed:25684209}. 35034 Methyl-CpG-binding domain-containing protein 7 (AtMBD7) (MBD07) (Methyl-CpG-binding protein MBD7) chromocenter [GO:0010369]; nucleus [GO:0005634]; enzyme binding [GO:0019899]; methyl-CpG binding [GO:0008327]; positive regulation of DNA demethylation [GO:1901537]; regulation of transcription, DNA-templated [GO:0006355]; response to karrikin [GO:0080167]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Highly expressed at the early seedling stage. {ECO:0000269|PubMed:25593350}. TISSUE SPECIFICITY: Expressed in leaves, buds, flowers, stems, siliques, mature seeds and roots. {ECO:0000269|PubMed:12954765}. locus:2168047; AT5G59800 methyl-CpG-binding domain-containing protein 7-like NA NA NA NA NA NA NA ENOG411E777 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Uncharacterized protein conserved in bacteria (DUF2256) NA NA NA NA NA NA NA ENOG411E776 Q9XI45 Q9XI45_ARATH At1g15230/F9L1_18 (F9L1.18 protein) (Uncharacterized protein At1g15230) 16467 At1g15230/F9L1_18 (F9L1.18 protein) (Uncharacterized protein At1g15230) locus:2037748; AT1G15230 NA NA NA NA NA NA NA NA ENOG411E771 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E770 psbZ P56790 PSBZ_ARATH Photosystem II reaction center protein Z (PSII-Z) FUNCTION: Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. {ECO:0000255|HAMAP-Rule:MF_00644}. 6569 Photosystem II reaction center protein Z (PSII-Z) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; photosynthesis [GO:0015979]; photosystem II stabilization [GO:0042549] locus:504954654; ATCG00300 Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna (By similarity) Photosystem II reaction center protein Z (PSII-Z),Photosystem II reaction center protein Z (Fragment) P12194,A0A0P0YAE3 PSBZ_ORYSJ,A0A0P0YAE3_ORYSJ psbZ ycf9 LOC_Osp1g00190,Os12g0504050 OSNPB_120504050 FUNCTION: Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. {ECO:0000255|HAMAP-Rule:MF_00644}.,FUNCTION: Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. {ECO:0000256|RuleBase:RU003472}. ENOG411E773 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of Unknown Function (DUF913) NA NA NA NA NA NA NA ENOG411E772 P93743 P93743_ARATH Expressed protein (Uncharacterized protein At2g42040) (WRC protein) 29190 Expressed protein (Uncharacterized protein At2g42040) (WRC protein) nucleus [GO:0005634]; developmental process [GO:0032502]; transcription, DNA-templated [GO:0006351] locus:2064573; AT2G42040 Has 154 Blast hits to 154 proteins in 12 species Archae - 0 NA NA NA NA NA NA NA ENOG411EI1M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cleavage stimulation factor subunit 1-like NA NA NA NA NA NA NA ENOG411EKVK LUH O48847 LUH_ARATH Transcriptional corepressor LEUNIG_HOMOLOG (Protein MUCILAGE-MODIFIED 1) DISRUPTION PHENOTYPE: Strong defects in seed mucilage extrusion; no mucilage capsule formation and slightly irregular columellae in seeds. Altered structure of mucilage that accumulates abnormal levels of substituted rhamnogalacturonan I and methyl-esterified homogalacturonan. Increased amount of most sugars associated with an increase in methylation of the mucilage and/or primary cell wall pectins (PubMed:11706181, PubMed:21362134, PubMed:21402796, PubMed:21518777). Reduced MUM2 expression in seed coat and embryo. Shorter roots (PubMed:21402796). Enhanced tolerance to salt and osmotic stress conditions (PubMed:24564815). In plants lacking both LUG and LUH, embryo lethality and abnormal flowers (PubMed:18390806). Enhance the polarity and growth defects of luh/+ lug mutant leaves, being partially abaxialized (PubMed:19837869). {ECO:0000269|PubMed:11706181, ECO:0000269|PubMed:18390806, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:21362134, ECO:0000269|PubMed:21402796, ECO:0000269|PubMed:21518777, ECO:0000269|PubMed:24564815}. Double homozygote are difficult to recover and may die very early in embryogenesis. Plants that do form are reduced in size with mature plants as small as single leaves. The inflorescence bears few flowers consisting of only carpels.,Reduced germination (80% of normal) slow initial growth short roots.,Reduced fertility- siliques do not elongate. Flower phenotype resembles the lug-16 single mutant with narrow sepals and petals. A percentage are also embryo lethal.,Mutant flowers have carpelloid sepals and sepal like organs topped with horns. No petals and stames are absent or fused to first whorl organs. Sterile.,Resembles seu-1 single mutant with reduced stamen number. Delayed germination; Low germination rate; Slow growth; Short roots-Z. Liu-2008 FUNCTION: Transcription repressor subunit of the SEU-SLK1 and SEU-SLK2 transcriptional corepressor of abiotic stress (e.g. salt and osmotic stress) response genes, by means of an epigenetic process involving histone modification (e.g. H3K9 and H3K14 acetylation), probably by recruiting HDAC, to facilitate the condensation of chromatin thus preventing transcription at the target genes (PubMed:24564815). Can also act as a transcription activator (PubMed:21518777). Implicated in embryo and floral development (PubMed:18390806). Involved in post-synthesis cell wall modifications necessary for mucilage extrusion from seeds upon imbibition, probably by promoting the expression of genes required for mucilage maturation (e.g. MUM2) (PubMed:11706181, PubMed:21362134, PubMed:21402796, PubMed:21518777). Regulates the maintenance on leaf polarity and meristem activity as well as the initiation of embryonic shoot apical meristem (SAM) development (PubMed:19837869). {ECO:0000269|PubMed:11706181, ECO:0000269|PubMed:18390806, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:21362134, ECO:0000269|PubMed:21402796, ECO:0000269|PubMed:21518777, ECO:0000269|PubMed:24564815}. 85515 Transcriptional corepressor LEUNIG_HOMOLOG (Protein MUCILAGE-MODIFIED 1) nucleus [GO:0005634]; transcription coactivator activity [GO:0003713]; cell differentiation [GO:0030154]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to external biotic stimulus [GO:0071217]; embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; galacturonan metabolic process [GO:0010393]; meristem maintenance [GO:0010073]; mucilage biosynthetic process [GO:0010192]; mucilage extrusion from seed coat [GO:0080001]; mucilage metabolic process involved in seed coat development [GO:0048359]; mucilage pectin biosynthetic process [GO:0048358]; negative regulation of response to salt stress [GO:1901001]; negative regulation of transcription, DNA-templated [GO:0045892]; plant-type cell wall modification [GO:0009827]; polarity specification of adaxial/abaxial axis [GO:0009944]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of embryonic development [GO:0045995]; regulation of flower development [GO:0009909]; regulation of leaf development [GO:2000024]; regulation of response to osmotic stress [GO:0047484]; regulation of shoot apical meristem development [GO:1902183]; regulation of transcription, DNA-templated [GO:0006355]; response to auxin [GO:0009733]; response to bacterium [GO:0009617]; response to cycloheximide [GO:0046898]; response to fungus [GO:0009620]; response to hypoxia [GO:0001666]; response to nematode [GO:0009624]; response to oxidative stress [GO:0006979]; response to salt [GO:1902074]; response to silver ion [GO:0010272]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Accumulates throughout young developing leaves, before being confined to the vasculature of older leaves (PubMed:19837869). Expressed during seed coat development, reaching peak expression late in differentiation at 10 days post anthesis (DPA) (PubMed:21518777). {ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:21518777}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seedlings, apex, flowers, siliques, flower organs and seeds (including seed coat). {ECO:0000269|PubMed:18390806, ECO:0000269|PubMed:21518777}. locus:2046437; AT2G32700 transcriptional corepressor Os04g0510200 protein (Fragment),Os02g0813800 protein (Putative LEUNIG),Os04g0510300 protein (Fragment) Q0JBT9,Q6K3E4,A0A0P0WC96 Q0JBT9_ORYSJ,Q6K3E4_ORYSJ,A0A0P0WC96_ORYSJ Os04g0510200 Os04g0510200 OSNPB_040510200,Os02g0813800 Os02g0813800 OJ1293_E04.10 OsJ_08845 OSJNBa0053L11.32 OSNPB_020813800,Os04g0510300 OSNPB_040510300 ENOG411EKVP Q0V845 Q0V845_ARATH At2g16405 (Transducin/WD40 repeat-like superfamily protein) 53966 At2g16405 (Transducin/WD40 repeat-like superfamily protein) locus:504956067; AT2G16405 WD repeat-containing protein 13-like Os01g0776400 protein A0A0P0V8T8 A0A0P0V8T8_ORYSJ Os01g0776400 OSNPB_010776400 ENOG411EKVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LEC14B homolog NA NA NA NA NA NA NA ENOG411EKVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chloroplast unusual positioning protein NA NA NA NA NA NA NA ENOG411EKVW IQM4,IQM1,EDA39 O64851,O82645,A0A1P8B3J0,A0A1P8B0V5,A0A1P8B3J7,B3H796,F4JVX1 IQM4_ARATH,IQM1_ARATH,A0A1P8B3J0_ARATH,A0A1P8B0V5_ARATH,A0A1P8B3J7_ARATH,B3H796_ARATH,F4JVX1_ARATH IQ domain-containing protein IQM4 (IQ motif-containing protein 4),IQ domain-containing protein IQM1 (IQ motif-containing protein 1),Calmodulin-binding family protein DISRUPTION PHENOTYPE: Reduced primary root length. Reduced stomatal aperture. {ECO:0000269|PubMed:22572939}. FUNCTION: May be involved in biotic and abiotic stress responses. {ECO:0000250|UniProtKB:O82645}.,FUNCTION: Involved in the modulation of stomatal movement. Promotes stomatal opening. May play a role in the regulation of chitin signaling. May be involved in biotic and abiotic stress responses. {ECO:0000269|PubMed:22572939}. 60487,55497,63959,48067,29497,38220,59952 IQ domain-containing protein IQM4 (IQ motif-containing protein 4),IQ domain-containing protein IQM1 (IQ motif-containing protein 1),Calmodulin-binding family protein cytoplasm [GO:0005737]; nucleus [GO:0005634],cytoplasm [GO:0005737]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; regulation of stomatal movement [GO:0010119],cytoplasm [GO:0005737]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; polar nucleus fusion [GO:0010197]; regulation of stomatal movement [GO:0010119]; response to chitin [GO:0010200] TISSUE SPECIFICITY: Expressed in roots, cauline leaves and flowers, and at lower levels in rosette leaves, stems and siliques. {ECO:0000269|Ref.5}.,TISSUE SPECIFICITY: Highly expressed in leaf mesophyll cells (PubMed:17032064). Expressed in roots, rosette and cauline leaves, stems, flowers and siliques (Ref.6). {ECO:0000269|PubMed:17032064, ECO:0000269|Ref.6}. locus:2057765;,locus:2123817; AT2G26190,AT4G33050 Inherit from NOG: calmodulin-binding family NA NA NA NA NA NA NA ENOG411EKVU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger SWIM domain-containing protein Os07g0593200 protein (Fragment) A0A0P0X8C5 A0A0P0X8C5_ORYSJ Os07g0593200 OSNPB_070593200 ENOG411EKVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipase (class 3) NA NA NA NA NA NA NA ENOG411EI12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0219350 protein (Fragment) A0A0P0VUT6 A0A0P0VUT6_ORYSJ Os03g0219350 OSNPB_030219350 ENOG411EG7U F4I177 F4I177_ARATH Hydroxyproline-rich glycoprotein family protein 13732 Hydroxyproline-rich glycoprotein family protein locus:504956215; AT1G15825 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411EG7T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0436500 protein,Os11g0436450 protein Q53LN4,A0A0N7KSV2 Q53LN4_ORYSJ,A0A0N7KSV2_ORYSJ Os11g0436500 LOC_Os11g24940 OsJ_33872 OSNPB_110436500,Os11g0436450 OSNPB_110436450 ENOG411EG7W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC NA NA NA NA NA NA NA ENOG411EG7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Membrane-associated apoptosis protein NA NA NA NA NA NA NA ENOG411E9EY GLR2.1,GLR2.4 O04660,O81776,A0A1P8B4K2 GLR21_ARATH,GLR24_ARATH,A0A1P8B4K2_ARATH Glutamate receptor 2.1 (Ligand-gated ion channel 2.1) (AtGLR3),Glutamate receptor 2.4 (Ligand-gated ion channel 2.4),Glutamate receptor FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 100905,99406,101595 Glutamate receptor 2.1 (Ligand-gated ion channel 2.1) (AtGLR3),Glutamate receptor 2.4 (Ligand-gated ion channel 2.4),Glutamate receptor integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed predominantly in roots. First strongly detected in all cell types of the root except at the apex. Later expressed at the root-shoot junction. {ECO:0000269|PubMed:12082126}.,TISSUE SPECIFICITY: Expressed predominantly in roots. {ECO:0000269|PubMed:12082126}. locus:2181196; AT5G27100,AT4G31710 Glutamate-gated receptor that probably acts as non- selective cation channel NA NA NA NA NA NA NA ENOG411E9EZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9EU F15B8.100 A1A6H5,Q8VZF4,Q9SVY5 A1A6H5_ARATH,Q8VZF4_ARATH,Q9SVY5_ARATH At3g57720 (Protein kinase superfamily protein),AT3g57730/F15B8_80 (Protein kinase superfamily protein),Protein kinase superfamily protein (Protein kinase-like protein) (RKS1) (Uncharacterized protein F15B8.100) 41037,40855,40086 At3g57720 (Protein kinase superfamily protein),AT3g57730/F15B8_80 (Protein kinase superfamily protein),Protein kinase superfamily protein (Protein kinase-like protein) (RKS1) (Uncharacterized protein F15B8.100) plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell surface receptor signaling pathway [GO:0007166] locus:2076681;,locus:2076671;,locus:2076586; AT3G57720,AT3G57730,AT3G57710 Serine-threonine protein kinase plant-type NA NA NA NA NA NA NA ENOG411E9ET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from COG: Lytic murein transglycosylase NA NA NA NA NA NA NA ENOG411E9E9 F4IXI5 F4IXI5_ARATH Serine/threonine-protein kinase WNK (With No Lysine)-like protein 41002 Serine/threonine-protein kinase WNK (With No Lysine)-like protein cytosol [GO:0005829]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] locus:2087070; AT3G15240 Inherit from KOG: Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411E9E8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 NA NA NA NA NA NA NA ENOG411E9E5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os01g0201250 protein A0A0P0UZV8 A0A0P0UZV8_ORYSJ Os01g0201250 OSNPB_010201250 ENOG411E2SH Q9SKN3 CSPL6_ARATH CASP-like protein 5A2 (AtCASPL5A2) 19224 CASP-like protein 5A2 (AtCASPL5A2) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2057497; AT2G28370 CASP-like protein CASP-like protein 5A2 (OsCASPL5A2),CASP-like protein 5A1 (OsCASPL5A1) Q339M6,Q10Q78 CSPLT_ORYSJ,CSPLV_ORYSJ Os10g0343200 LOC_Os10g20250 OsJ_31148,Os03g0206600 LOC_Os03g10870 OsJ_09845 OSJNBa0014O06.2 ENOG411DYY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydroxycinnamoyl-Coenzyme A shikimate quinate hydroxycinnamoyltransferase-like OSJNBa0060N03.22 protein (OSJNBa0085I10.1 protein) (Os04g0609500 protein),OSJNBa0060N03.21 protein (Os04g0609300 protein) Q7XPD9,Q7XPE0 Q7XPD9_ORYSJ,Q7XPE0_ORYSJ Os04g0609500 OSJNBa0060N03.22 OSJNBa0085I10.1 OSNPB_040609500,Os04g0609300 OSJNBa0060N03.21 OSNPB_040609300 ENOG411DYY0 NSL1 Q9SGN6 NSL1_ARATH MACPF domain-containing protein NSL1 (Protein NECROTIC SPOTTED LESIONS 1) (Protein NSL1) DISRUPTION PHENOTYPE: Constitutively activated HR-like cell death phenotype with endogenous accumulation of high levels of salicylic acid (SA) and constitutively activated defense phenotype. Dwarf plant with spotted necrotic lesions on its rosette and cauline leaves. Accumulation of high levels of callose and autofluorescent phenolic compounds localized to the necrotic lesions. {ECO:0000269|PubMed:16900325}. Dwarf; Necrotic lesions on rosette and cauline leaves-K. Shinozaki-2006 FUNCTION: Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity. {ECO:0000269|PubMed:16900325}. 67980 MACPF domain-containing protein NSL1 (Protein NECROTIC SPOTTED LESIONS 1) (Protein NSL1) cell death [GO:0008219]; defense response by callose deposition [GO:0052542]; immune response [GO:0006955]; plant-type hypersensitive response [GO:0009626]; regulation of salicylic acid metabolic process [GO:0010337]; response to salt stress [GO:0009651] locus:2032532; AT1G28380 MAC/Perforin domain Os05g0557400 protein (cDNA clone:J023023J10, full insert sequence),Os05g0447660 protein (Fragment) Q6I604,A0A0P0WN04 Q6I604_ORYSJ,A0A0P0WN04_ORYSJ Os05g0557400 OJ1214_E03.15 OsJ_19505 OSNPB_050557400,Os05g0447660 OSNPB_050447660 ENOG411DYY6 A3KPF8 PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080, chloroplastic 64012 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic chloroplast [GO:0009507]; intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2207415; AT1G79080 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DYY7 F4I2G1 F4I2G1_ARATH Ankyrin repeat family protein 67459 Ankyrin repeat family protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; cellular response to salicylic acid stimulus [GO:0071446]; regulation of defense response [GO:0031347]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; signal transduction [GO:0007165] locus:2020833; AT1G03670 Ankyrin repeat-containing protein Os07g0527800 protein,Os09g0323601 protein A0A0N7KNK3,A0A0P0XK23 A0A0N7KNK3_ORYSJ,A0A0P0XK23_ORYSJ Os07g0527800 OSNPB_070527800,Os09g0323601 OSNPB_090323601 ENOG411DYY5 MGL Q9SGU9 MGL_ARATH Methionine gamma-lyase (AtMGL) (EC 4.4.1.11) (L-methioninase) DISRUPTION PHENOTYPE: Increased leaves, flowers and seeds methionine content, and leaf and root S-methylmethionine content under conditions of sulfate starvation. Reduced MGL-mediated isoleucine biosynthesis from methionine. {ECO:0000269|PubMed:17169919, ECO:0000269|PubMed:19571310}. FUNCTION: Catalyzes the degradation of L-methionine to alpha-ketobutyrate, methanethiol and ammonia. Exhibits a high activity toward L-methionine, L-ethionine, L-homocysteine and seleno-L-methionine, but not L-cysteine. Involved in an alternative cysteine biosynthesis pathway to the reverse trans-sulfuration pathway (methionine->homocysteine->cystathionine->cysteine) in which methanethiol is an intermediate. Mediates also an alternative isoleucine biosynthesis pathway in which 2-ketobutyrate is an intermediate. {ECO:0000269|PubMed:17169919, ECO:0000269|PubMed:19571310}. ARA:AT1G64660-MONOMER;MetaCyc:AT1G64660-MONOMER; R-ATH-1614558;R-ATH-1614603; 4.4.1.11; 4.4.1.11 47821 Methionine gamma-lyase (AtMGL) (EC 4.4.1.11) (L-methioninase) cytosol [GO:0005829]; cystathionine gamma-lyase activity [GO:0004123]; cystathionine gamma-synthase activity [GO:0003962]; methionine gamma-lyase activity [GO:0018826]; pyridoxal phosphate binding [GO:0030170]; 'de novo' L-methionine biosynthetic process [GO:0071266]; cellular response to sulfate starvation [GO:0009970]; cellular response to water deprivation [GO:0042631]; cysteine biosynthetic process via cystathionine [GO:0019343]; methionine catabolic process via 2-oxobutanoate [GO:0019458]; protein homotetramerization [GO:0051289]; transsulfuration [GO:0019346] TISSUE SPECIFICITY: Expressed in roots, stems, siliques, leaves, flowers and seeds after imbibition (at protein level). Transcripts accumulate in dry mature seeds, but at protein level, only present upon imbibition. {ECO:0000269|PubMed:17030798, ECO:0000269|PubMed:17169919}. locus:2019449; AT1G64660 methionine Cys/Met metabolism PLP-dependent enzyme family protein, expressed (Os10g0517500 protein) (Putative gamma-lyase) (cDNA clone:J023092C09, full insert sequence) Q7XCS3 Q7XCS3_ORYSJ Os10g0517500 LOC_Os10g37340 Os10g0517500 OsJ_32167 OSJNBa0076F20.6 OSNPB_100517500 ENOG411DYY8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase Cellulose synthase-like protein E2 (EC 2.4.1.-) (OsCslE2),Cellulose synthase-like protein OsCslE2 (Os02g0725300 protein),Cellulose synthase-like protein OsCslE2-like (Os02g0725300 protein),Os02g0725300 protein (Fragment) Q0DXZ1,Q6Z5K3,Q6Z5K2,A0A0P0VP88 CSLE2_ORYSJ,Q6Z5K3_ORYSJ,Q6Z5K2_ORYSJ,A0A0P0VP88_ORYSJ CSLE2 Os02g0725300 LOC_Os02g49332,P0685G12.44-1 OJ1124_G07.14-1 Os02g0725300 OSNPB_020725300,P0685G12.44-2 OJ1124_G07.14-2 Os02g0725300 OSNPB_020725300,Os02g0725300 OSNPB_020725300 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ENOG411DYY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease Os06g0556000 protein (Putative amino acid transporter) (cDNA clone:J033107D14, full insert sequence),Os06g0228600 protein (Putative amino acid transport protein) (cDNA clone:002-115-E07, full insert sequence) Q5Z9R9,Q67WJ6 Q5Z9R9_ORYSJ,Q67WJ6_ORYSJ Os06g0556000 Os06g0556000 OsJ_21679 OSNPB_060556000 P0458E11.23,Os06g0228600 Os06g0228600 OSNPB_060228600 P0425F05.35 P0525F01.5 ENOG411DYYB Q8RXC2 Q8RXC2_ARATH At2g27890 (Coiled-coil protein) (Uncharacterized protein At2g27890:At2g27900:At2g27910) 124915 At2g27890 (Coiled-coil protein) (Uncharacterized protein At2g27890:At2g27900:At2g27910) locus:2057820; AT2G27900 Coiled-coil domain-containing protein Expressed protein (Os10g0546300 protein) Q336V4 Q336V4_ORYSJ Os10g0546300 LOC_Os10g39910 Os10g0546300 OSNPB_100546300 ENOG411DYYC QWRF7 Q1PE51 QWRF7_ARATH QWRF motif-containing protein 7 44219 QWRF motif-containing protein 7 locus:2122639; AT4G25190 Family of unknown function (DUF566) Expressed protein (Os10g0554900 protein),Os10g0554900 protein Q9AV13,A0A0P0XY17 Q9AV13_ORYSJ,A0A0P0XY17_ORYSJ LOC_Os10g40620 Os10g0554900 OSJNBb0014I11.7 OSNPB_100554900,Os10g0554900 OSNPB_100554900 ENOG411DYYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1296) Os05g0581800 protein,Os05g0581800 protein (Fragment) Q688S7,A0A0P0WRI7,A0A0N7KLB2 Q688S7_ORYSJ,A0A0P0WRI7_ORYSJ,A0A0N7KLB2_ORYSJ Os05g0581800 OSJNBa0017N18.24 OSNPB_050581800,Os05g0581800 OSNPB_050581800 ENOG411DYYD UPL4 Q9LYZ7,A0A1P8BFE7 UPL4_ARATH,A0A1P8BFE7_ARATH E3 ubiquitin-protein ligase UPL4 (Ubiquitin-protein ligase 4) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL4),Ubiquitin-protein ligase 4 FUNCTION: Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-983168; 2.3.2.26 167292,165399 E3 ubiquitin-protein ligase UPL4 (Ubiquitin-protein ligase 4) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL4),Ubiquitin-protein ligase 4 cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630],ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842] locus:2151306; AT5G02880 Ubiquitin-protein ligase Os05g0463900 protein (Fragment),Os05g0464001 protein Q0DHI3,A0A0P0WNB7 Q0DHI3_ORYSJ,A0A0P0WNB7_ORYSJ Os05g0463900 Os05g0463900 OSNPB_050463900,Os05g0464001 OSNPB_050464001 ENOG411DYYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen allergen NA NA NA NA NA NA NA ENOG411DYYJ APPR6 Q9FVX2,A0A1P8AVK9 PP129_ARATH,A0A1P8AVK9_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein 60205,55688 Pentatricopeptide repeat-containing protein At1g77360, mitochondrial,Tetratricopeptide repeat (TPR)-like superfamily protein intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2031447; AT1G77360 Pentatricopeptide repeat-containing protein Os03g0761300 protein (Pentatricopeptide, putative, expressed) Q94H96 Q94H96_ORYSJ LOC_Os03g55340 Os03g0761300 OsJ_12678 OSJNBb0048A17.10 OSNPB_030761300 ENOG411DYYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0180800 protein A0A0P0X3I7 A0A0P0X3I7_ORYSJ Os07g0180800 OSNPB_070180800 ENOG411DYYI SD31 P93756 SD31_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 (EC 2.7.11.1) (S-domain-3 (SD3) receptor kinase 1) (SD3-1) 2.7.11.1 85857 G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 (EC 2.7.11.1) (S-domain-3 (SD3) receptor kinase 1) (SD3-1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544] locus:2054326; AT2G41890 G-type lectin S-receptor-like serine threonine-protein kinase SD3-1-like NA NA NA NA NA NA NA ENOG411DYYN Q3EB08 FBK69_ARATH F-box/kelch-repeat protein At3g24760 42672 F-box/kelch-repeat protein At3g24760 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2087323; AT3G24760 F-box kelch-repeat protein NA NA NA NA NA NA NA ENOG411DYYM SWEET3 Q6NQN5 SWET3_ARATH Bidirectional sugar transporter SWEET3 (AtSWEET3) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 3) FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}. R-ATH-189200; 29538 Bidirectional sugar transporter SWEET3 (AtSWEET3) (Protein SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTERS 3) integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; sugar transmembrane transporter activity [GO:0051119]; carbohydrate transport [GO:0008643] locus:2163756; AT5G53190 bidirectional sugar transporter Bidirectional sugar transporter SWEET3a (OsSWEET3a),Bidirectional sugar transporter SWEET3b (OsSWEET3b),Bidirectional sugar transporter SWEET,Os01g0220700 protein Q0DJY3,Q5NAZ9,A0A0P0WJA2,A0A0P0V0L5 SWT3A_ORYSJ,SWT3B_ORYSJ,A0A0P0WJA2_ORYSJ,A0A0P0V0L5_ORYSJ SWEET3A Os05g0214300 LOC_Os05g12320 OsJ_17551,SWEET3B Os01g0220700 LOC_Os01g12130 OsJ_00913 P0483F08.29,Os05g0214300 OSNPB_050214300,Os01g0220700 OSNPB_010220700 FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. {ECO:0000250|UniProtKB:Q8L9J7}.,FUNCTION: Mediates both low-affinity uptake and efflux of sugar across the membrane. {ECO:0000256|RuleBase:RU910715}. ENOG411DYYR Q84M90,F4IXH9 Q84M90_ARATH,F4IXH9_ARATH ARM repeat superfamily protein (At3g15180) (Uncharacterized protein At3g15180),ARM repeat superfamily protein 56692,60185 ARM repeat superfamily protein (At3g15180) (Uncharacterized protein At3g15180),ARM repeat superfamily protein proteasome assembly [GO:0043248],plasmodesma [GO:0009506]; proteasome regulatory particle, base subcomplex [GO:0008540]; vacuolar membrane [GO:0005774]; proteasome regulatory particle assembly [GO:0070682] locus:2083666; AT3G15180 Proteasome non-ATPase 26S subunit Os05g0557200 protein (cDNA clone:001-044-G10, full insert sequence) (cDNA clone:J033084F06, full insert sequence) Q6I605 Q6I605_ORYSJ Os05g0557200 OJ1214_E03.14 OsJ_19504 OSNPB_050557200 ENOG411DYYS RANBP1C,RANBP1A,RANBP1B P92985,Q9LMK7,Q8RWG8 RBP1C_ARATH,RBP1A_ARATH,RBP1B_ARATH Ran-binding protein 1 homolog c,Ran-binding protein 1 homolog a (Ran-binding protein siRanBP),Ran-binding protein 1 homolog b 24722,25601,24389 Ran-binding protein 1 homolog c,Ran-binding protein 1 homolog a (Ran-binding protein siRanBP),Ran-binding protein 1 homolog b cytoplasm [GO:0005737]; nuclear pore [GO:0005643]; nucleus [GO:0005634]; Ran GTPase binding [GO:0008536]; G1/S transition of mitotic cell cycle [GO:0000082]; mRNA transport [GO:0051028]; positive regulation of GTPase activity [GO:0043547]; protein import into nucleus, translocation [GO:0000060]; RNA export from nucleus [GO:0006405]; spindle organization [GO:0007051]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nuclear pore [GO:0005643]; nucleus [GO:0005634]; Ran GTPase binding [GO:0008536]; G1/S transition of mitotic cell cycle [GO:0000082]; mRNA transport [GO:0051028]; positive regulation of GTPase activity [GO:0043547]; protein import into nucleus [GO:0006606]; RNA export from nucleus [GO:0006405]; spindle organization [GO:0007051]; ubiquitin-dependent protein catabolic process [GO:0006511] TISSUE SPECIFICITY: Ubiquitous. Preferentially expressed in root tips and gynoecium. {ECO:0000269|PubMed:9025305}. locus:2178798;,locus:2007467;,locus:2060837; AT5G58590,AT1G07140,AT2G30060 ran-binding protein 1 Os05g0350600 protein,Os03g0292800 protein (Ran-binding protein 1, putative, expressed) (cDNA clone:J023039I06, full insert sequence),Os05g0350600 protein (Fragment) Q0DIY4,Q10MW8,A0A0P0WL67 Q0DIY4_ORYSJ,Q10MW8_ORYSJ,A0A0P0WL67_ORYSJ Os05g0350600 Os05g0350600 OSNPB_050350600,Os03g0292800 LOC_Os03g18180 Os03g0292800 OsJ_10458 OSNPB_030292800,Os05g0350600 OSNPB_050350600 ENOG411DYYP LPEAT2 Q8S8S2 LPCT2_ARATH Lysophospholipid acyltransferase LPEAT2 (EC 2.3.1.25) (Lysophosphatidylethanolamine acyltransferase 2) (AtLPEAT2) FUNCTION: Displays acyl-CoA-dependent lysophospholipid acyltransferase activity with a subset of lysophospholipids as substrates. Exhibits strong acylation activity of lysophosphatidylethanolamine (LPE) and lower activity on lysophosphatidate (LPA). Has a preference for 18:1-LPE over 16:0-LPE as acceptor and palmitoyl-CoA (16:0-CoA) as acyl donor. Activity is calcium-independent. {ECO:0000269|PubMed:19445718}. MISCELLANEOUS: The ratio of isoform 2/isoform 1 mRNA is increased about 15-fold in the nonsense mRNA reducing factor mutant upf3-1. {ECO:0000305|PubMed:16098107}. PATHWAY: Lipid metabolism; phospholipid metabolism. ARA:AT2G45670-MONOMER; 2.3.1.25 61022 Lysophospholipid acyltransferase LPEAT2 (EC 2.3.1.25) (Lysophosphatidylethanolamine acyltransferase 2) (AtLPEAT2) integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]; plasmalogen synthase activity [GO:0050200]; phospholipid biosynthetic process [GO:0008654]; phospholipid metabolic process [GO:0006644] locus:2043639; AT2G45670 PlsC Os06g0712300 protein (Putative JD1),Os06g0712300 protein (Fragment) Q5Z801,A0A0P0X0T5 Q5Z801_ORYSJ,A0A0P0X0T5_ORYSJ Os06g0712300 OJ1663_H12.22 OSNPB_060712300,Os06g0712300 OSNPB_060712300 ENOG411DYYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase Probable glutathione S-transferase GSTF2 (EC 2.5.1.18) (GST-II),Os01g0764000 protein (Fragment) O82451,A0A0P0V8J4 GSTF2_ORYSJ,A0A0P0V8J4_ORYSJ GSTF2 RGST II Os01g0764000 LOC_Os01g55830 P0403C05.5,Os01g0764000 OSNPB_010764000 FUNCTION: Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. ENOG411DYYV Q8L7U7 ACDH_ARATH ACD11 homolog protein (Probable ceramide-1-phosphate transfer protein) 26514 ACD11 homolog protein (Probable ceramide-1-phosphate transfer protein) cytoplasm [GO:0005737]; nucleus [GO:0005634]; intermembrane lipid transfer activity [GO:0120013] locus:2135252; AT4G39670 glycolipid transfer protein domain-containing protein 1-like Expressed protein (Os03g0710700 protein),Os08g0556300 protein (Fragment) Q10E24,A0A0P0XIU0 Q10E24_ORYSJ,A0A0P0XIU0_ORYSJ Os03g0710700 LOC_Os03g50280 Os03g0710700 OSNPB_030710700,Os08g0556300 OSNPB_080556300 ENOG411DYYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: peptidoglycan-binding domain containing NA NA NA NA NA NA NA ENOG411DYYT Q9M302 PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 74187 Pentatricopeptide repeat-containing protein At3g48810 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2099458; AT3G48810 Pentatricopeptide repeat-containing protein Os05g0132000 protein Q65XT3 Q65XT3_ORYSJ Os05g0132000 OSNPB_050132000 P0033D06.15 ENOG411DYYU MXK3.18 Q9LV83 Q9LV83_ARATH Emb|CAB62602.1 (Mitochondrial transcription termination factor family protein) 44697 Emb|CAB62602.1 (Mitochondrial transcription termination factor family protein) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2177734; AT5G64950 mTERF NA NA NA NA NA NA NA ENOG411DYYZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os01g0628900 protein Q0JL26 Q0JL26_ORYSJ Os01g0628900 Os01g0628900 OsJ_02695 OSNPB_010628900 ENOG411DYYX P0C897 Y3264_ARATH Putative UPF0481 protein At3g02645 61399 Putative UPF0481 protein At3g02645 integral component of membrane [GO:0016021] locus:6530298195; AT3G02645 UPF0481 protein Os06g0179500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q8H612 Q8H612_ORYSJ Os06g0179500 OSJNBa0035I03.17 OSNPB_060179500 ENOG411DYYY MAG2 Q9STU3 MAG2_ARATH RINT1-like protein MAG2 (Protein MAIGO 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but dry seeds of mutant plants accumulate the precursors of the two major storage proteins albumin 2S and globulin 12S (PubMed:17194767). Increased sensitivity to salt stress, osmotic stress and abscisic acid (ABA) during germination and vegetative growth (PubMed:23025793). {ECO:0000269|PubMed:17194767, ECO:0000269|PubMed:23025793}. Mutant seeds accumulated the precursors of 12S globulin and 2S albumin and increased level of ER-localized chaperones. The size of protein storage vacuoles in the mutant seed cells is smaller. Mutant seed cells also have novel subcellular structures with a high electron-dense core. FUNCTION: Functions in the anterograde transport of storage protein precursors from the endoplasmic reticulum (ER) to the Golgi complex and in the retrograde transport from the Golgi complex to the ER (PubMed:17194767, PubMed:23025793). Forms a complex with ZW10/MIP1, MIP2 and MIP3 on the ER that may be responsible for efficient transport of seed storage proteins (PubMed:24118572). Required for the responses to environmental stresses during seed germination and vegetative growth. Probably not involved in the retrograde transport from the ER to the apoplast (PubMed:23025793). {ECO:0000269|PubMed:17194767, ECO:0000269|PubMed:23025793, ECO:0000269|PubMed:24118572}. 90233 RINT1-like protein MAG2 (Protein MAIGO 2) cytosol [GO:0005829]; extrinsic component of endoplasmic reticulum membrane [GO:0042406]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein targeting to vacuole [GO:0006623] TISSUE SPECIFICITY: Highly expressed in dry seeds. Expressed at low levels in roots, rosette and cauline leaves, stems and flowers. {ECO:0000269|PubMed:23025793}. locus:2100327; AT3G47700 RINT-1 / TIP-1 family Os02g0748100 protein,Chromosome structural maintenance protein-like (Os02g0748100 protein) Q6YUW6,Q6YUW7 Q6YUW6_ORYSJ,Q6YUW7_ORYSJ OSJNBa0078N11.28-2 Os02g0748100 OSNPB_020748100,Os02g0748100 OsJ_08380 OSJNBa0078N11.28-1 OSNPB_020748100 ENOG411E447 GAMT1 F4JUY5,A0A1P8B8X6,A0A1P8B7R9,F4JUZ2 GAMT1_ARATH,A0A1P8B8X6_ARATH,A0A1P8B7R9_ARATH,F4JUZ2_ARATH Gibberellic acid methyltransferase 1 (Gibberellin A(9) O-methyltransferase) (EC 2.1.1.275),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein DISRUPTION PHENOTYPE: No visible phenotype, even in gamt1 and gamt2 double mutants. {ECO:0000269|PubMed:17220201}. Small dark-green rosette that grow slowly and develop into dwarfed bushy pants. Some never bloom and the one that do start blooming after three months (compared to six weeks for wild type). Flowers are small and mostly fertile.,No visible phenotype.,Higher levels of bioactive GA4 and GA1 in the siliques of mutant compared to wild type.,Whereas the germination of wild type seeds was completely inhibited by 30 ;M ancymidol (inhibitor of GA biosynthesis) some of the mutant seeds still germinated.,Whereas the germination of wild type seeds was completely inhibited by 30 ;M ancymidol (inhibitor of GA biosynthesis) 60% of the mutant seeds still germinated. Germination resistant to ancymidol (GA biosynthesis inhibitor)-E. Pichersky-2007 FUNCTION: Methylates the carboxyl group of several gibberellins (GAs). Substrate preference is GA9 > GA20 > GA3 > GA4 > GA34 > GA51 > GA1 > GA19 > GA12. No activity with diterpenes abietic acid and ent-kaurenoic acid. {ECO:0000269|PubMed:17220201}. MISCELLANEOUS: Overexpression of GAMT1 results in dwarf phenotype. {ECO:0000305|PubMed:17220201}. 2.1.1.275; 2.1.1.275 41564,15419,28203,12948 Gibberellic acid methyltransferase 1 (Gibberellin A(9) O-methyltransferase) (EC 2.1.1.275),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein gibberellin A9 carboxyl methyltransferase activity [GO:0102117]; gibberellin carboxyl-O-methyltransferase activity [GO:0010341]; metal ion binding [GO:0046872]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757],methyltransferase activity [GO:0008168] DEVELOPMENTAL STAGE: Expression begins at early stages of silique development, peaks in the second half of this process and decreases after the start of desiccation. {ECO:0000269|PubMed:17220201}. TISSUE SPECIFICITY: Expressed in siliques, developing seeds, anthers and germinating seeds. Not detected in leaves, stems, flowers and roots. {ECO:0000269|PubMed:17220201}. locus:2131483;,locus:2131443; AT4G26420,AT4G26460 SAM dependent carboxyl methyltransferase Os06g0322000 protein,Os06g0323325 protein,Os06g0322400 protein,Os06g0323100 protein (Fragment),Os04g0666500 protein Q5ZA86,A3BB84,A0A0P0WVV9,A0A0P0WW84,A0A0N7KJW0 Q5ZA86_ORYSJ,A3BB84_ORYSJ,A0A0P0WVV9_ORYSJ,A0A0P0WW84_ORYSJ,A0A0N7KJW0_ORYSJ Os06g0322000 OsJ_21160 OSNPB_060322000 P0578B12.30,Os06g0323325 OsJ_21164 OSNPB_060323325,Os06g0322400 OSNPB_060322400,Os06g0323100 OSNPB_060323100,Os04g0666500 OSNPB_040666500 ENOG411E446 CRF4 Q9SUE3 CRF4_ARATH Ethylene-responsive transcription factor CRF4 (Protein CYTOKININ RESPONSE FACTOR 4) FUNCTION: Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. 38448 Ethylene-responsive transcription factor CRF4 (Protein CYTOKININ RESPONSE FACTOR 4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; ethylene-activated signaling pathway [GO:0009873]; leaf development [GO:0048366]; transcription factor import into nucleus [GO:0042991]; transcription, DNA-templated [GO:0006351] locus:2132962; AT4G27950 Transcription factor NA NA NA NA NA NA NA ENOG411E445 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like NA NA NA NA NA NA NA ENOG411E443 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os05g0570900 protein Q0DFU0 Q0DFU0_ORYSJ Os05g0570900 Os05g0570900 OsJ_19609 OSNPB_050570900 ENOG411E441 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Intraflagellar transport protein NA NA NA NA NA NA NA ENOG411E440 FD1,FD2 O04090,P16972 FER1_ARATH,FER2_ARATH Ferredoxin-1, chloroplastic (AtFd1),Ferredoxin-2, chloroplastic (AtFd2) retarded growth with thin leaves of a lighter yellowish-green color and more roundly shape Slow growth; Lower fresh and dry weights; Thin, rounded, pale yellow-green leaves-R. Scheibe-2008 FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. 15897,15539 Ferredoxin-1, chloroplastic (AtFd1),Ferredoxin-2, chloroplastic (AtFd2) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; electron transport chain [GO:0022900]; response to karrikin [GO:0080167],chloroplast [GO:0009507]; 2 iron, 2 sulfur cluster binding [GO:0051537]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872]; photosynthetic acclimation [GO:0009643]; photosynthetic electron transport chain [GO:0009767] TISSUE SPECIFICITY: Expressed in leaves. Not detected in roots. {ECO:0000269|PubMed:14684843}. locus:2197349;,locus:2206061; AT1G10960,AT1G60950 Ferredoxin NA NA NA NA NA NA NA ENOG411E448 O81898,A0A1P8B4W6 O81898_ARATH,A0A1P8B4W6_ARATH At4g21310 (Transmembrane protein, putative (DUF1218)) (Uncharacterized protein AT4g21310) (Uncharacterized protein T6K22.40),Transmembrane protein, putative (DUF1218) 18141,14031 At4g21310 (Transmembrane protein, putative (DUF1218)) (Uncharacterized protein AT4g21310) (Uncharacterized protein T6K22.40),Transmembrane protein, putative (DUF1218) integral component of membrane [GO:0016021] locus:2141186; AT4G21310 Protein of unknown function (DUF1218) NA NA NA NA NA NA NA ENOG411E44G A0A1P8AWY2,Q3EDC6 A0A1P8AWY2_ARATH,Q3EDC6_ARATH XRI1-like protein 18634,24977 XRI1-like protein locus:2204538; AT1G14630 NA Os02g0772600 protein (Fragment) A0A0P0VQE3 A0A0P0VQE3_ORYSJ Os02g0772600 OSNPB_020772600 ENOG411E44B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX Os08g0382800 protein (Fragment),Os08g0383250 protein,Os12g0568600 protein A0A0P0XFA9,A0A0P0XF68,A0A0P0YC20 A0A0P0XFA9_ORYSJ,A0A0P0XF68_ORYSJ,A0A0P0YC20_ORYSJ Os08g0382800 OSNPB_080382800,Os08g0383250 OSNPB_080383250,Os12g0568600 OSNPB_120568600 ENOG411E44A T14D3.140 Q9LFN4,Q9M1T9,Q9XIQ9,Q3E970 Q9LFN4_ARATH,Q9M1T9_ARATH,Q9XIQ9_ARATH,Q3E970_ARATH Uncharacterized protein F2I11_110,Uncharacterized protein T14D3.140,F13O11.17 protein,Uncharacterized protein 30097,34551,34547,12999 Uncharacterized protein F2I11_110,Uncharacterized protein T14D3.140,F13O11.17 protein,Uncharacterized protein locus:2147942;,locus:2096890;,locus:2010881;,locus:504954994; AT5G11220,AT3G45200,AT1G64870,AT5G24355 at1g64870 (e NA NA NA NA NA NA NA ENOG411E44N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA rRNA N-glycosidase Os03g0687800 protein (Fragment),rRNA N-glycosidase (EC 3.2.2.22),Os03g0683500 protein (Fragment) Q0DPI4,Q10EZ4,Q6AVW0,Q6AVV8,A0A0P0W2A5,A0A0P0W255,A0A0P0W1H2,A0A0P0W298 Q0DPI4_ORYSJ,Q10EZ4_ORYSJ,Q6AVW0_ORYSJ,Q6AVV8_ORYSJ,A0A0P0W2A5_ORYSJ,A0A0P0W255_ORYSJ,A0A0P0W1H2_ORYSJ,A0A0P0W298_ORYSJ Os03g0687800 OSNPB_030687800,Os03g0688600 LOC_Os03g48280 OSNPB_030688600,OSJNBb0024N19.5 LOC_Os03g48220 Os03g0687700 OsJ_12157 OSNPB_030687700,OSJNBb0024N19.7 LOC_Os03g48200 Os03g0687400 OSNPB_030687400,Os03g0688000 OSNPB_030688000,Os03g0683200 OSNPB_030683200,Os03g0683500 OSNPB_030683500,Os03g0688100 OSNPB_030688100 ENOG411E44M CURT1A O04616,B3H429 CUT1A_ARATH,B3H429_ARATH Protein CURVATURE THYLAKOID 1A, chloroplastic,CURVATURE THYLAKOID 1A-like protein DISRUPTION PHENOTYPE: No effect on growth behavior, leaf coloration, grana stacks or photochemical efficiency of photosystem II. Curt1a, curt1b, curt1c and curt1d quadruple mutant shows disorganized thylakoids with extended stretches of unstacked membranes and broader stacks made up of fewer layers. {ECO:0000269|PubMed:23839788}. FUNCTION: Determines thylakoid architecture by inducing membrane curvature. {ECO:0000269|PubMed:23839788}. 17698,13136 Protein CURVATURE THYLAKOID 1A, chloroplastic,CURVATURE THYLAKOID 1A-like protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastoglobule [GO:0010287]; thylakoid [GO:0009579],integral component of membrane [GO:0016021]; thylakoid [GO:0009579] locus:2125018; AT4G01150 NA Os06g0264800 protein (cDNA clone:001-012-A05, full insert sequence) (cDNA clone:001-205-D11, full insert sequence) (cDNA clone:J013031L04, full insert sequence) (cDNA clone:J013071I08, full insert sequence),Os02g0731600 protein (Fragment) Q5Z6P4,Q0DXV3 Q5Z6P4_ORYSJ,Q0DXV3_ORYSJ Os06g0264800 Os06g0264800 OJ1001_B06.10 OsJ_20897 OSNPB_060264800,Os02g0731600 Os02g0731600 OSNPB_020731600 ENOG411E44H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Rna binding protein Os04g0583200 protein A0A0P0WE31 A0A0P0WE31_ORYSJ Os04g0583200 OSNPB_040583200 ENOG411E44W HSP26.5 Q9SSQ8 HS26M_ARATH 26.5 kDa heat shock protein, mitochondrial (AtHsp26.5) 26545 26.5 kDa heat shock protein, mitochondrial (AtHsp26.5) mitochondrion [GO:0005739]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542] locus:2035079; AT1G52560 Heat Shock Protein 23.6 kDa heat shock protein, mitochondrial (OsHsp23.6) B7EZJ7 HS23M_ORYSJ HSP23.6 Os02g0201000 LOC_Os02g10710 P0419A09.16-1 ENOG411E44V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 'Cold-shock' DNA-binding domain Cold shock domain protein 1 (Os02g0121100 protein) (Putative Glycine-rich protein 2) (cDNA clone:002-171-F11, full insert sequence) Q6YUR8 Q6YUR8_ORYSJ Os02g0121100 CSP1 OJ1020_C02.12 OsJ_05164 OSJNBb0088N06.21 OSNPB_020121100 ENOG411E44U FLA14 Q9LTW9 FLA14_ARATH Fasciclin-like arabinogalactan protein 14 FUNCTION: May be a cell surface adhesion protein. 27381 Fasciclin-like arabinogalactan protein 14 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2087715; AT3G12660 fasciclin-like arabinogalactan protein NA NA NA NA NA NA NA ENOG411E44S FLA9,FLA13,FLA6 Q9ZWA8,Q9FFH6,Q9SIL7 FLA9_ARATH,FLA13_ARATH,FLA6_ARATH Fasciclin-like arabinogalactan protein 9,Fasciclin-like arabinogalactan protein 13,Fasciclin-like arabinogalactan protein 6 FUNCTION: May be a cell surface adhesion protein. 26115,26205,26506 Fasciclin-like arabinogalactan protein 9,Fasciclin-like arabinogalactan protein 13,Fasciclin-like arabinogalactan protein 6 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506],anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:2024122;,locus:2167664;,locus:2054769; AT1G03870,AT5G44130,AT2G20520 fasciclin-like arabinogalactan protein NA NA NA NA NA NA NA ENOG411E44P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0336350 protein,Os12g0621400 protein,Os04g0194900 protein,Os03g0750500 protein,Os03g0759125 protein (Fragment) A0A0P0WW65,A0A0P0YCP5,A0A0P0W7U9,A0A0P0W3B3,A0A0P0W3Q0 A0A0P0WW65_ORYSJ,A0A0P0YCP5_ORYSJ,A0A0P0W7U9_ORYSJ,A0A0P0W3B3_ORYSJ,A0A0P0W3Q0_ORYSJ Os06g0336350 OSNPB_060336350,Os12g0621400 OSNPB_120621400,Os04g0194900 OSNPB_040194900,Os03g0750500 OSNPB_030750500,Os03g0759125 OSNPB_030759125 ENOG411E44Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family Os09g0279300 protein Q0J2Z3 Q0J2Z3_ORYSJ Os09g0279300 Os09g0279300 OsJ_28653 OSNPB_090279300 ENOG411E44Y Q9FGK0 NDUB8_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}. 13211 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; oxidation-reduction process [GO:0055114] locus:2169003; AT5G47570 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 8 Expressed protein (Os10g0551600 protein) (cDNA clone:001-108-A11, full insert sequence) Q9FWN8 Q9FWN8_ORYSJ OSJNBa0015J15.32 LOC_Os10g40410 Os10g0551600 OsJ_32392 OSNPB_100551600 ENOG411E44X A0A1P8AZ19 A0A1P8AZ19_ARATH Histone deacetylase-like protein 16293 Histone deacetylase-like protein zinc ion binding [GO:0008270] Histone deacetylase Os12g0508266 protein B9GDC7 B9GDC7_ORYSJ Os12g0508266 OsJ_36238 OSNPB_120508266 ENOG411DYCA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411DYCH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0953400 protein (Putative myosin heavy chain homolog) (cDNA clone:002-128-C08, full insert sequence) (cDNA clone:J033028C06, full insert sequence),Os05g0585300 protein,Leucine Rich Repeat family protein, expressed (Os11g0640000 protein),Os03g0599400 protein (Fragment),OSJNBa0076N16.15 protein (OSJNBa0084K20.17 protein) (Os04g0491100 protein),Os05g0585200 protein Q5JL02,B9FLU1,Q2R0M6,Q0DQG0,Q7X7C8,A0A0P0WRK0 Q5JL02_ORYSJ,B9FLU1_ORYSJ,Q2R0M6_ORYSJ,Q0DQG0_ORYSJ,Q7X7C8_ORYSJ,A0A0P0WRK0_ORYSJ Os01g0953400 Os01g0953400 OSNPB_010953400 P0431G06.24,Os05g0585300 OsJ_19707 OSNPB_050585300,LOC_Os11g42060 Os11g0640000 OSNPB_110640000,Os03g0599400 OSNPB_030599400,Os04g0491100 Os04g0491100 OsJ_15289 OSJNBa0076N16.15 OSJNBa0084K20.17 OSNPB_040491100,Os05g0585200 OSNPB_050585200 ENOG411DYCK MDF20.11 Q9SAF2,Q9FM71,F4K4Y6 Q9SAF2_ARATH,Q9FM71_ARATH,F4K4Y6_ARATH F3F19.21 protein (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At1g13190) (Uncharacterized protein At1g13190; F3F19.21),RNA-binding (RRM/RBD/RNP motifs) family protein 61400,76433,64025 F3F19.21 protein (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein At1g13190) (Uncharacterized protein At1g13190; F3F19.21),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2031830;,locus:2162107; AT1G13190,AT5G55670 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DYCM ATO Q9FG01 ATO_ARATH Splicing factor SF3a60 homolog (Protein ATROPOS) (Splicing factor ATO) FUNCTION: Splicing factor homolog to SF3a60 that may be involved in pre-spliceosome formation. Is necessary for gametic cell fate determination. {ECO:0000269|PubMed:18702672}. R-ATH-72163; 58972 Splicing factor SF3a60 homolog (Protein ATROPOS) (Splicing factor ATO) cytosol [GO:0005829]; spliceosomal complex [GO:0005681]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; mRNA splicing, via spliceosome [GO:0000398]; regulation of embryo sac egg cell differentiation [GO:0045694] TISSUE SPECIFICITY: Expressed at moderate levels in all sporophytic tissues with strongest expression in gametophytes. {ECO:0000269|PubMed:18702672}. locus:2152855; AT5G06160 splicing factor 3A subunit Os03g0717600 protein (Splicing factor 3A subunit 3, putative, expressed) Q10DW3 Q10DW3_ORYSJ Os03g0717600 LOC_Os03g50850 Os03g0717600 OsJ_12358 OSNPB_030717600 ENOG411DYCN MDC12.2 A0A1P8BD60,F4K975 A0A1P8BD60_ARATH,F4K975_ARATH Sec14p-like phosphatidylinositol transfer family protein 26321,30149 Sec14p-like phosphatidylinositol transfer family protein chloroplast [GO:0009507] locus:2161942; AT5G63060 CRAL/TRIO domain Os02g0321500 protein (SEC14 cytosolic factor-like) (cDNA clone:002-112-A04, full insert sequence) Q6ER71 Q6ER71_ORYSJ Os02g0321500 Os02g0321500 OSJNBa0073A18.23 OSNPB_020321500 ENOG411DYC0 Q9C9T8 Q9C9T8_ARATH Glycosyltransferase (Putative UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide)-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase) (Putative UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide)-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; 62395-63952) (UDP-Glycosyltransferase superfamily protein) ARA:AT1G73740-MONOMER; 46629 Glycosyltransferase (Putative UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide)-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase) (Putative UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide)-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; 62395-63952) (UDP-Glycosyltransferase superfamily protein) undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [GO:0050511]; carbohydrate metabolic process [GO:0005975]; lipid glycosylation [GO:0030259] locus:2027764; AT1G73740 UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine Os01g0516700 protein A0A0N7KD23 A0A0N7KD23_ORYSJ Os01g0516700 OSNPB_010516700 ENOG411DYC1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NAD dependent epimerase/dehydratase family protein, expressed (Os10g0456100 protein) Q7XDQ8 Q7XDQ8_ORYSJ LOC_Os10g31780 Os10g0456100 OsJ_31766 OSNPB_100456100 ENOG411DYC2 O80503 O80503_ARATH Expressed protein (TRIGALACTOSYLDIACYLGLYCEROL-like protein) 49831 Expressed protein (TRIGALACTOSYLDIACYLGLYCEROL-like protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; mitochondrion [GO:0005739]; plastid [GO:0009536]; vacuolar membrane [GO:0005774] locus:2042361; AT2G44640 Protein of unknown function (DUF3769) NA NA NA NA NA NA NA ENOG411DYC4 PIRL8 Q8RWE5 PIRL8_ARATH Plant intracellular Ras-group-related LRR protein 8 FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. R-ATH-6798695; 42440 Plant intracellular Ras-group-related LRR protein 8 TISSUE SPECIFICITY: Widely expressed except flowers. {ECO:0000269|PubMed:15809230}. locus:2120825; AT4G26050 Leucine-rich repeat Plant intracellular Ras-group-related LRR protein 1 (Intracellular Ras-group-related LRR protein 1) (OsIRL1) Q7XNY1 PIRL1_ORYSJ IRL1 Os04g0605300 LOC_Os04g51580 OsJ_16067 OSJNBb0015N08.10 DISRUPTION PHENOTYPE: Late flowering. {ECO:0000269|PubMed:20949308}. FUNCTION: Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}. ENOG411DYC7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA fasciclin-like arabinogalactan protein Endosperm specific protein-like (Os02g0461500 protein) (cDNA clone:002-150-H07, full insert sequence) Q6K6F3 Q6K6F3_ORYSJ Os02g0461500 OSNPB_020461500 P0644G05.24 ENOG411DYC8 TOP2,TOPII P30182,Q9SKH1,B3H4G2 TOP2_ARATH,Q9SKH1_ARATH,B3H4G2_ARATH DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II),Putative DNA topoisomerase (Uncharacterized protein At2g13720),DNA topoisomerase 2 (EC 5.99.1.3) FUNCTION: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks.,FUNCTION: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. {ECO:0000256|RuleBase:RU362094}. MISCELLANEOUS: Eukaryotic topoisomerase I and II can relax both negative and positive supercoils, whereas prokaryotic enzymes relax only negative supercoils. 5.99.1.3 164107,26523,160409 DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II),Putative DNA topoisomerase (Uncharacterized protein At2g13720),DNA topoisomerase 2 (EC 5.99.1.3) nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; metal ion binding [GO:0046872]; DNA topological change [GO:0006265]; mitotic DNA integrity checkpoint [GO:0044774]; resolution of meiotic recombination intermediates [GO:0000712]; sister chromatid segregation [GO:0000819],ATP binding [GO:0005524]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918],ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; DNA topological change [GO:0006265] locus:2076201;,locus:2040496; AT3G23890,AT2G13720 Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (By similarity) DNA topoisomerase 2 (EC 5.99.1.3) (Fragment),DNA topoisomerase 2 (EC 5.99.1.3),Os02g0699700 protein (Fragment) Q0DYE1,Q9LGX8,A0A0P0VNM2 Q0DYE1_ORYSJ,Q9LGX8_ORYSJ,A0A0P0VNM2_ORYSJ Os02g0699700 Os02g0699700 OSNPB_020699700,Os01g0234200 OsJ_01012 OSNPB_010234200 P0702F03.20,Os02g0699700 OSNPB_020699700 FUNCTION: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. {ECO:0000256|RuleBase:RU362094}. ENOG411ECBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-mannose binding lectin NA NA NA NA NA NA NA ENOG411ECBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA benzyl alcohol O-benzoyltransferase-like NA NA NA NA NA NA NA ENOG411ECBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411ECBE O65252 GL25_ARATH Probable germin-like protein subfamily 2 member 5 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 22812 Probable germin-like protein subfamily 2 member 5 apoplast [GO:0048046]; cell wall [GO:0005618]; plasmodesma [GO:0009506]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]; plasmodesmata-mediated intercellular transport [GO:0010497]; regulation of root development [GO:2000280] locus:2146759; AT5G26700 germin-like protein NA NA NA NA NA NA NA ENOG411ECBB Q84JL7,A0A1P8BB77 Q84JL7_ARATH,A0A1P8BB77_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g39220),Alpha/beta-Hydrolases superfamily protein 36849,35995 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g39220),Alpha/beta-Hydrolases superfamily protein hydrolase activity [GO:0016787] locus:2157260; AT5G39220 hydrolase alpha beta fold family protein NA NA NA NA NA NA NA ENOG411ECBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: 26S proteasome nonATPase regulatory subunit NA NA NA NA NA NA NA ENOG411ECBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ECBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily NA NA NA NA NA NA NA ENOG411ECBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411ECBW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetamidase/Formamidase family Os01g0764900 protein B9ET62 B9ET62_ORYSJ Os01g0764900 OsJ_03566 OSNPB_010764900 ENOG411ECBT LECRK61,LECRK62,LECRK64,LECRK63,LecRK-VI.1 Q9SR87,Q9M021,Q66GN2,Q9M020,A0A1I9LTB8 LRK61_ARATH,LRK62_ARATH,LRK64_ARATH,LRK63_ARATH,A0A1I9LTB8_ARATH Probable L-type lectin-domain containing receptor kinase VI.1 (LecRK-VI.1) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase VI.2 (LecRK-VI.2) (EC 2.7.11.1) (Lectin receptor kinase A4.1),Lectin-domain containing receptor kinase VI.4 (LecRK-VI.4) (EC 2.7.11.1) (Lectin receptor kinase A4.3),Lectin-domain containing receptor kinase VI.3 (LecRK-VI.3) (EC 2.7.11.1) (Lectin receptor kinase A4.2),Concanavalin A-like lectin protein kinase family protein DISRUPTION PHENOTYPE: Slight enhancement in abscisic acid-inhibited germination. Redundant with LECRKA4.2 and LECRKA4.3. {ECO:0000269|PubMed:18987212}.,DISRUPTION PHENOTYPE: Slight enhancement in abscisic acid-inhibited germination. Redundant with LECRKA4.1 and LECRKA4.2. {ECO:0000269|PubMed:18987212}.,DISRUPTION PHENOTYPE: Slight enhancement in abscisic acid-inhibited germination. Redundant with LECRKA4.1 and LECRKA4.3. {ECO:0000269|PubMed:18987212}. Germination sensitive to ABA-Z. Zheng-2009 FUNCTION: Involved in negative regulation of abscisic acid response in seed germination. {ECO:0000269|PubMed:18987212}.; FUNCTION: Involved in resistance response to the pathogenic bacteria Pseudomonas syringae. {ECO:0000269|PubMed:25083911}.,FUNCTION: Involved in negative regulation of abscisic acid response in seed germination. {ECO:0000269|PubMed:18987212}. 2.7.11.1 77600,75868,76735,75985,80096 Probable L-type lectin-domain containing receptor kinase VI.1 (LecRK-VI.1) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase VI.2 (LecRK-VI.2) (EC 2.7.11.1) (Lectin receptor kinase A4.1),Lectin-domain containing receptor kinase VI.4 (LecRK-VI.4) (EC 2.7.11.1) (Lectin receptor kinase A4.3),Lectin-domain containing receptor kinase VI.3 (LecRK-VI.3) (EC 2.7.11.1) (Lectin receptor kinase A4.2),Concanavalin A-like lectin protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; defense response to bacterium [GO:0042742]; pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response [GO:0052033]; response to abscisic acid [GO:0009737]; seed germination [GO:0009845],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; seed germination [GO:0009845],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein kinase activity [GO:0004672] TISSUE SPECIFICITY: Strongly expressed in the vascular system and trichomes of the leaves. Also expressed in guard cells, anthers, stigmas and germinating seeds, but not found in petals or roots. Increased susceptibility to the bacteria Pseudomonas syringae, characterized by stronger necrotic symptoms and higher bacterial proliferation (PubMed:25083911). {ECO:0000269|PubMed:18987212, ECO:0000269|PubMed:25083911}. locus:2097613;,locus:2149780;,locus:2149810;,locus:2149795; AT3G08870,AT5G01540,AT5G01560,AT5G01550 Legume lectin domain NA NA NA NA NA NA NA ENOG411ECBU GA2OX3,GA2OX2 O64692,Q9XFR9 G2OX3_ARATH,G2OX2_ARATH Gibberellin 2-beta-dioxygenase 3 (EC 1.14.11.13) (GA 2-oxidase 3) (Gibberellin 2-beta-hydroxylase 3) (Gibberellin 2-oxidase 3),Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.13) (GA 2-oxidase 2) (Gibberellin 2-beta-hydroxylase 2) (Gibberellin 2-oxidase 2) FUNCTION: Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. Converts GA9/GA20 to GA51/GA29 and GA4/GA1 to GA34/GA8. {ECO:0000269|PubMed:10200325, ECO:0000269|PubMed:18805991}. PATHWAY: Plant hormone biosynthesis; gibberellin biosynthesis. ARA:AT2G34555-MONOMER;MetaCyc:AT2G34555-MONOMER;,ARA:AT1G30040-MONOMER;MetaCyc:AT1G30040-MONOMER; 1.14.11.13; 1.14.11.13 38216,38457 Gibberellin 2-beta-dioxygenase 3 (EC 1.14.11.13) (GA 2-oxidase 3) (Gibberellin 2-beta-hydroxylase 3) (Gibberellin 2-oxidase 3),Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.13) (GA 2-oxidase 2) (Gibberellin 2-beta-hydroxylase 2) (Gibberellin 2-oxidase 2) gibberellin 2-beta-dioxygenase activity [GO:0045543]; metal ion binding [GO:0046872]; gibberellin biosynthetic process [GO:0009686]; response to light stimulus [GO:0009416],gibberellin 2-beta-dioxygenase activity [GO:0045543]; metal ion binding [GO:0046872]; gibberellin biosynthetic process [GO:0009686]; response to red light [GO:0010114]; response to red or far red light [GO:0009639] TISSUE SPECIFICITY: Not expressed in the apex. {ECO:0000269|PubMed:16139211}.,TISSUE SPECIFICITY: Preferentially expressed in flowers, siliques, and upper stems. Expressed in cotyledons, at the base of the shoot apical meristem and developing leaf primordia. {ECO:0000269|PubMed:10200325, ECO:0000269|PubMed:16139211, ECO:0000269|PubMed:16905669}. locus:505006289;,locus:2198258; AT2G34555,AT1G30040 gibberellin 2-oxidase 3 NA NA NA NA NA NA NA ENOG411ECBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein Os09g0480300 protein (cDNA clone:J033054O21, full insert sequence),Os09g0480300 protein B7ES14,A0A0N7KR00 B7ES14_ORYSJ,A0A0N7KR00_ORYSJ Os09g0480300 OSNPB_090480300 ENOG411ECBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411ECBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cDNA clone J023126F05 full insert sequence NA NA NA NA NA NA NA ENOG411ECBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: DNA helicase NA NA NA NA NA NA NA ENOG411ECBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hsp20/alpha crystallin family NA NA NA NA NA NA NA ENOG411ECBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411ECB6 ALMT13 Q9LS23 ALMTD_ARATH Aluminum-activated malate transporter 13 (AtALMT13) FUNCTION: Malate transporter. {ECO:0000250}. 60505 Aluminum-activated malate transporter 13 (AtALMT13) integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; malate transmembrane transporter activity [GO:0015140] locus:2142290; AT5G46600 Aluminium activated malate transporter NA NA NA NA NA NA NA ENOG411ECB5 NAC081 Q9C598 NAC81_ARATH Protein ATAF2 (NAC domain-containing protein 81) (ANAC081) DISRUPTION PHENOTYPE: Reduced sensitivity to indole-3-acetonitrile. {ECO:0000269|PubMed:22965747}. FUNCTION: Involved in disease resistance response (PubMed:16115070, PubMed:19625399). May function as repressor of pathogenesis-related proteins (PubMed:16115070). May function in the regulation of host basal defense responses against viral infection (PubMed:19625399). Transcriptional activator involved in responses to wounding and infection with tobamovirus (TMV) (PubMed:22937923). Binds to the DNA sequences 5'-AAAATATCT-3' and 5'AGATTTTT-3' of CYP734A1/BAS1 and CYP72C1/SOB7 promoters, respectively. Acts as suppressor of the brassinosteroid (BR)-inactivating enzymes CYP734A1/BAS1 and CYP72C1/SOB7, and prevents their expression in almost all tissues. Plays a central role in integrating BR homeostasis and seedling development. Regulates the spatial regulation of BR homeostasis and participates in the regulation of hypocotyl elongation and root growth by suppressing BR catabolism. Mediates connection between BR catabolism and photomorphogenesis (PubMed:26493403). Binds to, and transactivates the promoter of the auxin biosynthetic gene NIT2 (PubMed:22965747). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16115070, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:19625399, ECO:0000269|PubMed:22937923, ECO:0000269|PubMed:22965747, ECO:0000269|PubMed:26493403, ECO:0000269|PubMed:26518251}. MISCELLANEOUS: Plants over-expressing NAC081 show enhanced susceptibility to the necrotrophic fungal pathogen Fusarium oxysporum (PubMed:16115070). Plants over-expressing NAC081 exhibit abnormal developmental phenotypes such as dwarfism and leaf-yellowing (PubMed:22965747). Plants silencing NAC081 produce abnormally shaped seeds (PubMed:18849494). {ECO:0000269|PubMed:16115070, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22965747}. 32225 Protein ATAF2 (NAC domain-containing protein 81) (ANAC081) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein histidine kinase binding [GO:0043424]; embryo development ending in seed dormancy [GO:0009793]; leaf senescence [GO:0010150]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cell size [GO:0008361]; regulation of photomorphogenesis [GO:0010099]; response to fungus [GO:0009620]; response to jasmonic acid [GO:0009753]; response to light stimulus [GO:0009416]; response to salicylic acid [GO:0009751]; response to sucrose [GO:0009744]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351]; viral process [GO:0016032] TISSUE SPECIFICITY: Expressed in roots, cotyledons, rosette leaves, cauline leaves and mature flowers. Expressed at low levels in stems and flower buds. {ECO:0000269|PubMed:16115070}. locus:504956335; AT5G08790 No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411ECB0 ACT Q9FNP9,F4J485 AGCT_ARATH,F4J485_ARATH Agmatine coumaroyltransferase (EC 2.3.1.64),HXXXD-type acyl-transferase family protein DISRUPTION PHENOTYPE: Increased susceptibility to A.brassicicola infection. {ECO:0000269|PubMed:19521717}. Complete loss of hydroxycinnamic acid amide accumulation-T. Nishioka-2009 FUNCTION: Involved in the biosynthesis of hydroxycinnamic acid amides, which play a role in defense against pathogens. Agmatine is the preferred acyl acceptor, lower activity is observed towards putrescine. The preferred acyl donor is p-coumaroyl-CoA, lower activity is seen towards feruloyl-CoA. {ECO:0000269|PubMed:19521717}. 2.3.1.64; 2.3.1.64 51075,24479 Agmatine coumaroyltransferase (EC 2.3.1.64),HXXXD-type acyl-transferase family protein agmatine N4-coumaroyltransferase activity [GO:0047634],transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2159476;,locus:2091788; AT5G61160,AT3G29720 Transferase family NA NA NA NA NA NA NA ENOG411ECB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aldo/keto reductase family NA NA NA NA NA NA NA ENOG411EIB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S-adenosyl-l-methionine decarboxylase leader peptide NA NA NA NA NA NA NA ENOG411EIB5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SUMO1 sentrin specific peptidase NA NA NA NA NA NA NA ENOG411EIB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIB7 Q9SU28,F4JRD0 Q9SU28_ARATH,F4JRD0_ARATH At4g12580 (Uncharacterized protein AT4g12580),Uncharacterized protein 11048,10254 At4g12580 (Uncharacterized protein AT4g12580),Uncharacterized protein locus:2135640; AT4G12580 NA NA NA NA NA NA NA NA ENOG411DWS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase GDSL-like Lipase/Acylhydrolase family protein, expressed (Os12g0566700 protein) (cDNA clone:J023050D08, full insert sequence) (cDNA clone:J023108M03, full insert sequence),Os12g0566700 protein (Fragment) Q2QNG2,A0A0P0YBI2 Q2QNG2_ORYSJ,A0A0P0YBI2_ORYSJ Os12g0566700 LOC_Os12g37910 OSNPB_120566700,Os12g0566700 OSNPB_120566700 ENOG411DWS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF827 Os03g0109800 protein (Fragment) A0A0P0VS23 A0A0P0VS23_ORYSJ Os03g0109800 OSNPB_030109800 ENOG411DWS0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ-domain Os05g0535900 protein Q6L5I6 Q6L5I6_ORYSJ Os05g0535900 OJ1741_B01.8 OsJ_19348 OSNPB_050535900 ENOG411DWS1 Q9SHQ6 Q9SHQ6_ARATH F1K23.6 (Guanosine-3',5'-bis (Diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215)) 52917 F1K23.6 (Guanosine-3',5'-bis (Diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215)) integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787] locus:2018748; AT1G28760 Uncharacterized conserved protein (DUF2215) Expressed protein (Os03g0654500 protein) (cDNA clone:J013052K14, full insert sequence) Q84ST1 Q84ST1_ORYSJ Os03g0654500 LOC_Os03g45180 Os03g0654500 OsJ_11941 OSJNBa0092N01.23 OSJNBb0023J24.15 OSNPB_030654500 ENOG411DWS6 Q9LM77,A0A1P8ASF3 Q9LM77_ARATH,A0A1P8ASF3_ARATH At1g20770 (Coiled-coil protein) (F2D10.26),Coiled-coil protein 23500,18918 At1g20770 (Coiled-coil protein) (F2D10.26),Coiled-coil protein extrinsic component of endoplasmic reticulum membrane [GO:0042406]; unfolded protein binding [GO:0051082],integral component of membrane [GO:0016021] locus:2030447; AT1G20770 Coiled-coil domain-containing protein OSJNBb0065L13.4 protein (Os04g0509200 protein) (cDNA clone:J023038G06, full insert sequence) Q7XQ15 Q7XQ15_ORYSJ Os04g0509200 OSJNBb0065L13.4 OSNPB_040509200 ENOG411DWS7 DEX1 F4IYM4 DEX1_ARATH Protein DEFECTIVE IN EXINE FORMATION 1 DISRUPTION PHENOTYPE: Male sterile. Defective pollen wall pattern formation at early tetrad stage; delayed and reduced primexine deposition, as well as abnormal rippling of the plasma membrane and no production of spacers. Random sporopollenin deposition on the plasma membrane along the microspore wall. {ECO:0000269|PubMed:11743117}. Abnormal pollen exine layer-C. Makaroff-2001 FUNCTION: Required for exine pattern formation during pollen development, especially for primexine deposition. {ECO:0000269|PubMed:11743117}. 99711 Protein DEFECTIVE IN EXINE FORMATION 1 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; cell wall organization [GO:0071555]; pollen exine formation [GO:0010584]; pollen wall assembly [GO:0010208] TISSUE SPECIFICITY: Mostly expressed in buds, and, to a lower extent, in leaves, roots and seedlings. {ECO:0000269|PubMed:11743117}. locus:2095274; AT3G09090 defective in exine formation Defective in exine formation protein, putative, expressed (Os03g0825700 protein) (Putative dex1 protein),Os03g0825700 protein (Fragment) Q10BA5,A0A0P0W5E1 Q10BA5_ORYSJ,A0A0P0W5E1_ORYSJ OJ1111_B11.16 LOC_Os03g61050 Os03g0825700 OSNPB_030825700,Os03g0825700 OSNPB_030825700 ENOG411DWS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger ZZ type OSJNBa0044K18.2 protein (Os04g0476800 protein) Q7XK43 Q7XK43_ORYSJ Os04g0476800 OsJ_15184 OSJNBa0044K18.2 OSNPB_040476800 ENOG411DWS5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb transcription factor (Os01g0853700 protein) (Putative MYB transcription factor) Q5N9B7 Q5N9B7_ORYSJ Os01g0853700 Os01g0853700 OsJ_04107 OSNPB_010853700 P0529E05.26 ENOG411DWSJ Q9LMX8 6PGL1_ARATH Probable 6-phosphogluconolactonase 1 (6PGL 1) (EC 3.1.1.31) FUNCTION: Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. {ECO:0000250}. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 2/3. ARA:AT1G13700-MONOMER; R-ATH-71336; 3.1.1.31; Biosynthesis of secondary metabolites (01110),Microbial metabolism in diverse environments (01120),Pentose phosphate pathway (00030),Metabolic pathways (01100) 3.1.1.31 29887 Probable 6-phosphogluconolactonase 1 (6PGL 1) (EC 3.1.1.31) cytosol [GO:0005829]; 6-phosphogluconolactonase activity [GO:0017057]; carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt, oxidative branch [GO:0009051] locus:2023842; AT1G13700 6-phosphogluconolactonase Probable 6-phosphogluconolactonase 2 (6PGL 2) (EC 3.1.1.31),Os07g0604000 protein (Fragment) Q6Z4H0,A0A0P0X999 6PGL2_ORYSJ,A0A0P0X999_ORYSJ Os07g0604000 LOC_Os07g41280 OsJ_024061 OSJNBb0040H10.9,Os07g0604000 OSNPB_070604000 FUNCTION: Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. {ECO:0000250}. ENOG411DWSK PBL28 Q84M95,A0A1P8AMU7,A0A1P8AMR5,F4I7Q8,A0A1P8AMR4,A0A1P8AMR7 PBL28_ARATH,A0A1P8AMU7_ARATH,A0A1P8AMR5_ARATH,F4I7Q8_ARATH,A0A1P8AMR4_ARATH,A0A1P8AMR7_ARATH Probable serine/threonine-protein kinase PBL28 (EC 2.7.11.1) (PBS1-like protein 28),Protein kinase superfamily protein FUNCTION: May be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}. R-ATH-446652; 2.7.11.1 42541,34244,30314,40820,29017,32430 Probable serine/threonine-protein kinase PBL28 (EC 2.7.11.1) (PBS1-like protein 28),Protein kinase superfamily protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; defense response [GO:0006952]; protein phosphorylation [GO:0006468],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2199857; AT1G24030 serine threonine-protein kinase Os09g0375600 protein (Fragment) A0A0P0XMI6 A0A0P0XMI6_ORYSJ Os09g0375600 OSNPB_090375600 ENOG411DWSH RABF1,ARA6 Q9CB01,A0A1I9LT70 RABF1_ARATH,A0A1I9LT70_ARATH Ras-related protein RABF1 (AtRABF1) (Ras-related protein Ara-6) (Ras-related protein Rab5C) (AtRab5C),Ras-related small GTP-binding family protein FUNCTION: Endosomal protein probably involved in endocytosis. Probably not involved in vacuolar trafficking. {ECO:0000269|PubMed:11532937, ECO:0000269|PubMed:12724533}. ARA:AT3G54840-MONOMER; 21889,18477 Ras-related protein RABF1 (AtRABF1) (Ras-related protein Ara-6) (Ras-related protein Rab5C) (AtRab5C),Ras-related small GTP-binding family protein cytoplasmic side of endosome membrane [GO:0010009]; cytosol [GO:0005829]; early endosome [GO:0005769]; early endosome membrane [GO:0031901]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; early endosome to late endosome transport [GO:0045022]; endocytosis [GO:0006897],GTP binding [GO:0005525]; GTPase activity [GO:0003924] TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:11532937}. locus:2082672; AT3G54840 ras-related protein Os10g0441800 protein (Ras-related protein RHN1, putative, expressed) (cDNA clone:001-007-H06, full insert sequence) (cDNA clone:J023042B11, full insert sequence),Os03g0151900 protein (Ras-related protein RHN1, putative, expressed) (cDNA clone:001-122-A01, full insert sequence) (cDNA clone:J033030F24, full insert sequence) Q337T4,Q10RN9 Q337T4_ORYSJ,Q10RN9_ORYSJ LOC_Os10g30520 Os10g0441800 OSNPB_100441800,LOC_Os03g05740 Os03g0151900 OsJ_09439 OSNPB_030151900 ENOG411DWSI HAP8 F4K7K8,Q9FH14,F4K7K7 F4K7K8_ARATH,Q9FH14_ARATH,F4K7K7_ARATH Hapless protein,Hapless 8 (Uncharacterized protein At5g56250) 109275,90289,109147 Hapless protein,Hapless 8 (Uncharacterized protein At5g56250) locus:2156455;,locus:2156425; AT5G56240,AT5G56250 expressed protein OSJNBa0089K21.11 protein (Os04g0471400 protein),Os04g0471400 protein (Fragment) Q7XQM5,A0A0N7KJ77,A0A0P0WBF2 Q7XQM5_ORYSJ,A0A0N7KJ77_ORYSJ,A0A0P0WBF2_ORYSJ Os04g0471400 OsJ_15140 OSJNBa0089K21.11 OSNPB_040471400,Os04g0471400 OSNPB_040471400 ENOG411DWSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0209600 protein (Putative lipase) (cDNA clone:J023075I03, full insert sequence) Q75IK4 Q75IK4_ORYSJ Os05g0209600 OJ1008_D08.1 OSJNBb0016G07.8 OSNPB_050209600 ENOG411DWSM GSTF11,GSTF12 Q96324,Q9FE46 GSTFB_ARATH,GSTFC_ARATH Glutathione S-transferase F11 (AtGSTF11) (EC 2.5.1.18) (AtGSTF6) (GST class-phi) (GST class-phi member 11),Glutathione S-transferase F12 (AtGSTF12) (EC 2.5.1.18) (GST class-phi member 12) (Glutathione S-transferase 26) (Protein TRANSPARENT TESTA 19) DISRUPTION PHENOTYPE: Great reduction of anthocyanin pigments in the vegetative parts and brown pigments in the seed coat. Accumulation of unextractable proanthocyanidins. {ECO:0000269|PubMed:14675436, ECO:0000269|PubMed:21054438}. brown seed coat however reduced level of flavonoids in the tapetum cells. Unlike the wild type where flavonoids are accumulated in the tapetosomes in the tapetum cells the mutant has flavonoids accumulated in the cytosol Pale seed coat-M. Gruber-2010 FUNCTION: May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides. {ECO:0000250}.,FUNCTION: Involved in the transport and/or accumulation of both anthocyanins and proanthocyanidins (PA)s in the vacuole. Functions in the cytosol to maintain the regular accumulation in the vacuole of PA precursors, such as epicatechin and glycosylated epicatechin. {ECO:0000269|PubMed:14675436, ECO:0000269|PubMed:21054438}. ARA:AT3G03190-MONOMER;,ARA:AT5G17220-MONOMER; Glutathione metabolism (00480),Chemical carcinogenesis (05204),Metabolism of xenobiotics by cytochrome P450 (00980),Drug metabolism - cytochrome P450 (00982) 2.5.1.18 24637,24581 Glutathione S-transferase F11 (AtGSTF11) (EC 2.5.1.18) (AtGSTF6) (GST class-phi) (GST class-phi member 11),Glutathione S-transferase F12 (AtGSTF12) (EC 2.5.1.18) (GST class-phi member 12) (Glutathione S-transferase 26) (Protein TRANSPARENT TESTA 19) cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749]; response to oxidative stress [GO:0006979]; toxin catabolic process [GO:0009407],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plant-type vacuole membrane [GO:0009705]; cation binding [GO:0043169]; glutathione transferase activity [GO:0004364]; anthocyanin-containing compound metabolic process [GO:0046283]; glutathione metabolic process [GO:0006749]; regulation of flavonol biosynthetic process [GO:1900384]; toxin catabolic process [GO:0009407] locus:2097730;,locus:2167215; AT3G03190,AT5G17220 glutathione s-transferase NA NA NA NA NA NA NA ENOG411DWSB HWS Q9M310,A0A1I9LRL4,A0A1I9LRL3 FBK77_ARATH,A0A1I9LRL4_ARATH,A0A1I9LRL3_ARATH F-box/kelch-repeat protein At3g61590,Galactose oxidase/kelch repeat superfamily protein FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 46972,51231,47985 F-box/kelch-repeat protein At3g61590,Galactose oxidase/kelch repeat superfamily protein ubiquitin-protein transferase activity [GO:0004842]; plant organ development [GO:0099402],integral component of membrane [GO:0016021] locus:2082797; AT3G61590 F-box kelch-repeat protein Fimbriata-like (Os01g0659900 protein),Os02g0260200 protein Q5SMS6,Q0E293 Q5SMS6_ORYSJ,Q0E293_ORYSJ Os01g0659900 OSNPB_010659900 P0445H04.9 P0684E06.20,Os02g0260200 Os02g0260200 OSNPB_020260200 ENOG411DWSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0131100 protein (Fragment) A0A0P0VEA4,A0A0P0VED8 A0A0P0VEA4_ORYSJ,A0A0P0VED8_ORYSJ Os02g0131100 OSNPB_020131100 ENOG411DWSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KH domain-containing protein KH domain containing protein, expressed (Os10g0495000 protein) (Putative RNA-binding protein) (cDNA clone:J013072P14, full insert sequence),Os10g0493100 protein (Fragment),Os10g0497500 protein (Fragment) Q8LNT9,A0A0P0XW19,A0A0P0XW96 Q8LNT9_ORYSJ,A0A0P0XW19_ORYSJ,A0A0P0XW96_ORYSJ OSJNBa0041P03.3 LOC_Os10g35220 Os10g0495000 OSNPB_100495000,Os10g0493100 OSNPB_100493100,Os10g0497500 OSNPB_100497500 ENOG411DWSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0199000 protein,Os02g0199200 protein Q6H729,Q6H726 Q6H729_ORYSJ,Q6H726_ORYSJ Os02g0199000 OsJ_05778 OSNPB_020199000 P0026H03.24,P0026H03.27 Os02g0199200 OSNPB_020199200 ENOG411DWSG T07M07.19 Q8S8F3,Q9C8C2,Q9S761,Q9C8C4,Q9SJN7,O48729,Q9C8C3,F4I650,F4JTS9,F4IIG2 Q8S8F3_ARATH,Q9C8C2_ARATH,Q9S761_ARATH,Q9C8C4_ARATH,Q9SJN7_ARATH,O48729_ARATH,Q9C8C3_ARATH,F4I650_ARATH,F4JTS9_ARATH,F4IIG2_ARATH Pectin lyase-like superfamily protein (Putative polygalacturonase),Pectin lyase-like superfamily protein (Polygalacturonase, putative),Hypothetical polygalacturonase (Pectin lyase-like superfamily protein) (Putative polygalacturonase),Glycoside hydrolase family 28 protein (Pectin lyase-like superfamily protein) (Polygalacturonase, putative),Pectin lyase-like superfamily protein ARA:AT2G15460-MONOMER;,ARA:AT1G43100-MONOMER;,ARA:AT2G40310-MONOMER;,ARA:AT1G43080-MONOMER;,ARA:AT2G15450-MONOMER;,ARA:AT2G26620-MONOMER;,ARA:AT1G43090-MONOMER; 43828,49147,44085,44245,44080,43981,49068,43890,44215,44102 Pectin lyase-like superfamily protein (Putative polygalacturonase),Pectin lyase-like superfamily protein (Polygalacturonase, putative),Hypothetical polygalacturonase (Pectin lyase-like superfamily protein) (Putative polygalacturonase),Glycoside hydrolase family 28 protein (Pectin lyase-like superfamily protein) (Polygalacturonase, putative),Pectin lyase-like superfamily protein extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555],lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975] locus:2047218;,locus:2030803;,locus:2063114;,locus:2030797;,locus:2047223;,locus:2066251;,locus:2030791;,locus:2020352;,locus:2119485;,locus:2047153; AT2G15460,AT1G43100,AT2G40310,AT1G43080,AT2G15450,AT2G26620,AT1G43090,AT1G17150,AT4G13760,AT2G15470 Glycoside hydrolase family 28 protein polygalacturonase (pectinase) family protein Os06g0545200 protein,Os06g0611500 protein (Putative polygalacturonase) (cDNA clone:J023142F24, full insert sequence),Os06g0545400 protein (Os06g0545800 protein) (Putative polygalacturonase) (cDNA clone:J023140O11, full insert sequence) (cDNA, clone: J023014L13, full insert sequence) (cDNA, clone: J023135P03, full insert sequence) A3BCJ3,Q69X44,Q5Z5X0 A3BCJ3_ORYSJ,Q69X44_ORYSJ,Q5Z5X0_ORYSJ Os06g0545200 OsJ_21620 OSNPB_060545200,Os06g0611500 Os06g0611500 OSNPB_060611500 P0429G06.4 P0490F09.40,Os06g0545800 Os06g0545400 OJ1212_H09.15 OJ1212_H09.22 OSNPB_060545400 OSNPB_060545800 P0007G12.31 ENOG411DWSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hexokinase Hexokinase-8 (EC 2.7.1.1) (Hexokinase-4) Q1WM15 HXK8_ORYSJ HXK8 HXK4 Os01g0190400 LOC_Os01g09460 P0710E05.19 FUNCTION: Fructose and glucose phosphorylating enzyme. {ECO:0000269|PubMed:16552590}. ENOG411DWSE Q67XD6,F4ITR8 Q67XD6_ARATH,F4ITR8_ARATH At2g32500 (Stress responsive alpha-beta barrel domain protein) (Uncharacterized protein At2g32500),Stress responsive alpha-beta barrel domain protein 31599,25130 At2g32500 (Stress responsive alpha-beta barrel domain protein) (Uncharacterized protein At2g32500),Stress responsive alpha-beta barrel domain protein locus:2060231; AT2G32500 Stress responsive A/B Barrel Domain Expressed protein (Os03g0110900 protein) Q10SU2 Q10SU2_ORYSJ Os03g0110900 LOC_Os03g02020 OSNPB_030110900 ENOG411DWSZ RDM3,KTF1 F4JW79,A0A1P8BFP7 RDM3_ARATH,A0A1P8BFP7_ARATH Protein RNA-directed DNA methylation 3 (KOW domain-containing transcription factor 1) (Protein SPT5-like),Kow domain-containing transcription factor 1 DISRUPTION PHENOTYPE: Decrease in the accumulation of several 24-nt RNAs (PubMed:19343051). Reduced DNA methylation and released silencing of RNA-directed DNA methylation (RdDM) target loci promoters (e.g. LTI78/RD29A, YKT61/AtGP1 and AtMU1) without abolishing the siRNA triggers (PubMed:19410546, PubMed:19343051, PubMed:21738482). Suppression of gene silencing mediated by ROS1 disruption in the double mutants ros1 rdm3-1, ros1 rdm3-2 and ros1 rdm3-3 (PubMed:19410546). Loss in non-CG methylation at DRM2-dependent sites (PubMed:21150311). Reduced H3K9me2 at IGN5 and IGN26 loci (PubMed:21738482). {ECO:0000269|PubMed:19343051, ECO:0000269|PubMed:19410546, ECO:0000269|PubMed:21150311, ECO:0000269|PubMed:21738482}. defective DNA methylation; altered levels of 24-nt sRNA. Decreased DNA methylation-J. Zhu-2009 FUNCTION: Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). Functions as an adapter protein that binds scaffold transcripts generated by polymerase V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex (PubMed:19410546, PubMed:19343051). Promotes the expression of 24-nt RNAs (PubMed:19343051). Required for the initial establishment of DNA methylation (PubMed:21150311). Together with AGO4, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci (PubMed:21738482). {ECO:0000269|PubMed:19343051, ECO:0000269|PubMed:19410546, ECO:0000269|PubMed:21150311, ECO:0000269|PubMed:21738482}. R-ATH-113418;R-ATH-674695;R-ATH-6796648;R-ATH-72086;R-ATH-77075; 158039,155957 Protein RNA-directed DNA methylation 3 (KOW domain-containing transcription factor 1) (Protein SPT5-like),Kow domain-containing transcription factor 1 DSIF complex [GO:0032044]; nucleoplasm [GO:0005654]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; chromatin silencing [GO:0006342]; DNA methylation [GO:0006306]; gene silencing [GO:0016458]; mRNA processing [GO:0006397]; production of siRNA involved in RNA interference [GO:0030422]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; RNA-directed DNA methylation [GO:0080188]; transcription elongation from RNA polymerase II promoter [GO:0006368],regulation of transcription, DNA-templated [GO:0006355] locus:2179979; AT5G04290 Early transcription elongation factor of RNA pol II NGN section Os05g0506200 protein (Fragment) C7J286 C7J286_ORYSJ Os05g0506200 Os05g0506200 OSNPB_050506200 ENOG411DWSY NLE1 Q9FLX9 NLE1_ARATH Notchless protein homolog FUNCTION: Required for female gametophyte development. {ECO:0000269|PubMed:23572950}. 52897 Notchless protein homolog Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; ribosome [GO:0005840]; embryo sac development [GO:0009553]; ribosomal large subunit assembly [GO:0000027] locus:2176897; AT5G52820 notchless protein Notchless, putative, expressed (Os11g0594200 protein) (cDNA clone:001-115-B05, full insert sequence),Notchless, putative, expressed (Os10g0104500 protein),Os10g0104500 protein (Fragment) Q2R1T0,Q33BI7,A0A0N7KRB9 Q2R1T0_ORYSJ,Q33BI7_ORYSJ,A0A0N7KRB9_ORYSJ LOC_Os11g38170 Os11g0594200 OsJ_34468 OSNPB_110594200,Os10g0104500 LOC_Os10g01540 Os10g0104500 OsJ_30462 OSNPB_100104500,Os10g0104500 OSNPB_100104500 ENOG411DWSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0430600 protein A0A0P0WAK0 A0A0P0WAK0_ORYSJ Os04g0430600 OSNPB_040430600 ENOG411DWSS MEE12 Q5XVF0,F4JI12,A0A1P8AW93 MEE12_ARATH,F4JI12_ARATH,A0A1P8AW93_ARATH TATA box-binding protein-associated factor RNA polymerase I subunit B (Central cell guidance protein) (Protein MATERNAL EFFECT EMBRYO ARREST 12) (TATA box-binding protein-associated factor 1B) (TBP-associated factor 1B),TATA box-binding protein associated factor RNA polymerase I subunit B-like protein,TATA box-binding protein associated factor RNA polymerase I subunit B (Fragment) DISRUPTION PHENOTYPE: Disrupted function of the female gametophyte. Defective in micropylar pollen tube guidance leading to zygotic lethality. {ECO:0000269|PubMed:18055609}. Female gametophyte defective; Embryo defective (inferred)-W. Yang-2007 FUNCTION: Component of RNA polymerase I core factor complex that acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during transcription initiation such as pre-initiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment (By similarity). Required for the development of the one-cell zygote and endosperm in embryos (PubMed:15634699). Required for micropylar pollen tube guidance, but has no effect on ovule development and gametophytic cell fate specification (PubMed:18055609). May regulate the transcription of secreted cysteine-rich peptide (CRP) genes in the embryo sac (PubMed:26462908). {ECO:0000250|UniProtKB:P40992, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:18055609, ECO:0000269|PubMed:26462908}. MISCELLANEOUS: Expression of MEE12 in the central cell alone is sufficient to restore the normal pollen tube guidance phenotype. 75475,11549,16050 TATA box-binding protein-associated factor RNA polymerase I subunit B (Central cell guidance protein) (Protein MATERNAL EFFECT EMBRYO ARREST 12) (TATA box-binding protein-associated factor 1B) (TBP-associated factor 1B),TATA box-binding protein associated factor RNA polymerase I subunit B-like protein,TATA box-binding protein associated factor RNA polymerase I subunit B (Fragment) RNA polymerase I core factor complex [GO:0070860]; RNA polymerase transcription factor SL1 complex [GO:0005668]; metal ion binding [GO:0046872]; RNA polymerase I CORE element sequence-specific DNA binding [GO:0001164]; transcription factor activity, RNA polymerase I CORE element binding transcription factor recruiting [GO:0001187]; embryo development ending in seed dormancy [GO:0009793]; RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript [GO:0001189] DEVELOPMENTAL STAGE: Expression in central cell of the mature female gametophyte is pollination independent. {ECO:0000269|PubMed:18055609}. TISSUE SPECIFICITY: Expressed at high levels in seedlings, inflorescences and young siliques and at lower levels in roots. Not detected in leaves and stems. Detected in root tips and shoot apical meristems, in anthers, primarily in microspores with weaker expression in mature pollen grains and in the central cell of the mature female gametophyte. Not expressed in synergids, egg cells, antipodal cells, endosperm cells and fertilized egg cells. {ECO:0000269|PubMed:18055609}. locus:504955973;,locus:5019474800; AT2G02955,AT4G01335 Component of RNA polymerase I core factor complex that acts as a GTF2B TFIIB-like factor and plays a key role in multiple steps during trancription initiation such as preinitiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment (By similarity) TATA box-binding protein-associated factor RNA polymerase I subunit B (TATA box-binding protein-associated factor 1B) (TBP-associated factor 1B),Os05g0352700 protein Q5W770,A0A0P0WL56 TAF1B_ORYSJ,A0A0P0WL56_ORYSJ Os05g0352700 OJ1320_D10.4 OsJ_18183,Os05g0352700 OSNPB_050352700 FUNCTION: Component of RNA polymerase I core factor complex that acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during transcription initiation such as pre-initiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment (By similarity). {ECO:0000250}. ENOG411DWSP SPO11-2 Q9M4A1,A0A1P8AMF9 SPO12_ARATH,A0A1P8AMF9_ARATH Meiotic recombination protein SPO11-2 (AtSPO11-2) (EC 5.99.1.3),Sporulation 11-2 DISRUPTION PHENOTYPE: Plants show a semi-sterile phenotype and a drastic decrease of meiotic recombination, indicating that SPO11-1 and SPO11-3 are not functionally redundant. SPO11-1 and SPO11-2 are both required for double-strand breaks induction. {ECO:0000269|PubMed:17018031, ECO:0000269|PubMed:17965269}. The first meiotic division of pollen mother cells because the homologs neither pair nor form SCs due to the lack of initial DSB formation,Anthers were shorter and aged earlier. Chromosome segregation is severely disturbed. Severely reduced fertility due to defects in meiosis-K. Sugimoto-Shirasu-2006 FUNCTION: Component of a topoisomerase 6 complex specifically required for meiotic recombination (PubMed:17018031, PubMed:17965269, PubMed:26917763). Together with MTOPVIB, mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination (PubMed:26917763). The complex promotes relaxation of negative and positive supercoiled DNA and DNA decatenation through cleavage and ligation cycles (PubMed:17018031, PubMed:17965269, PubMed:26917763). {ECO:0000269|PubMed:17018031, ECO:0000269|PubMed:17965269, ECO:0000269|PubMed:26917763}. 5.99.1.3 43126,30641 Meiotic recombination protein SPO11-2 (AtSPO11-2) (EC 5.99.1.3),Sporulation 11-2 nuclear chromosome [GO:0000228]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; endodeoxyribonuclease activity, producing 3'-phosphomonoesters [GO:0016889]; metal ion binding [GO:0046872]; chiasma assembly [GO:0051026]; DNA catabolic process, endonucleolytic [GO:0000737]; embryo sac development [GO:0009553]; meiotic DNA double-strand break processing [GO:0000706]; pollen development [GO:0009555]; seed development [GO:0048316],chromosome [GO:0005694]; ATP binding [GO:0005524]; catalytic activity [GO:0003824]; DNA binding [GO:0003677]; DNA catabolic process, endonucleolytic [GO:0000737] TISSUE SPECIFICITY: Very low expression in flowers and shoots. {ECO:0000269|PubMed:10710421}. locus:2024598; AT1G63990 meiotic recombination protein Meiotic recombination protein SPO11-2 (OsSPO11-2) (OsSPO11B) (Topoisomerase 6 subunit A2) (OsTOP6A2),Os08g0156900 protein (Putative SPO11 protein) Q6ZD95,Q6ZD94 SPO12_ORYSJ,Q6ZD94_ORYSJ SPO11-2 Os08g0156900 LOC_Os08g06050 P0438H08.23-1,P0438H08.23-2 Os08g0156900 OSNPB_080156900 FUNCTION: Required for meiotic recombination. Mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination (By similarity). {ECO:0000250}. ENOG411DWSQ ATE1 Q0WRA3 Q0WRA3_ARATH ATPase E1 (AtE1) 19809 ATPase E1 (AtE1) peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; RNA binding [GO:0003723] locus:2023903; AT1G13690 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os03g0600400 protein A0A0P0VZZ4 A0A0P0VZZ4_ORYSJ Os03g0600400 OSNPB_030600400 ENOG411DWSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os02g0640600 protein A0A0P0VMG5 A0A0P0VMG5_ORYSJ Os02g0640600 OSNPB_020640600 ENOG411DWSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavodoxin-like fold NA NA NA NA NA NA NA ENOG411DWST CPL4,RTNLB21,MTI20.26 Q00IB6,Q56X72,A0A1P8BFN2,A0A1P8BCX0,A0A1P8BFR7 CPL4_ARATH,RTNLS_ARATH,A0A1P8BFN2_ARATH,A0A1P8BCX0_ARATH,A0A1P8BFR7_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 (FCP-like 4) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 4) (AtCPL4) (CTD phosphatase-like 4),Reticulon-like protein B21 (AtRTNLB21),C-terminal domain phosphatase-like 4,Reticulon-like protein No visible phenotype. FUNCTION: Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Required for normal plant growth. {ECO:0000250, ECO:0000269|PubMed:16905668}. R-ATH-113418;R-ATH-674695;R-ATH-6796648; 3.1.3.16 50264,55195,42382,66785,44402 RNA polymerase II C-terminal domain phosphatase-like 4 (FCP-like 4) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 4) (AtCPL4) (CTD phosphatase-like 4),Reticulon-like protein B21 (AtRTNLB21),C-terminal domain phosphatase-like 4,Reticulon-like protein DNA-directed RNA polymerase II, holoenzyme [GO:0016591]; nucleus [GO:0005634]; CTD phosphatase activity [GO:0008420]; metal ion binding [GO:0046872]; protein C-terminus binding [GO:0008022]; RNA binding [GO:0003723]; dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021],nucleus [GO:0005634]; phosphoprotein phosphatase activity [GO:0004721] locus:4010714056;,locus:2174418; AT5G58003,AT5G58000 RNA polymerase II C-terminal domain phosphatase-like Os05g0390500 protein (cDNA clone:J013096L04, full insert sequence) Q75KI1 Q75KI1_ORYSJ Os05g0390500 OJ1057_G07.1 OsJ_18418 OSNPB_050390500 ENOG411DWSU IRE1B,IRE1A,IRE1-1 Q9SF12,Q93VJ2,Q9C5S2,F4KH40,F4KH41 IRE1L_ARATH,IRE1B_ARATH,IRE1A_ARATH,F4KH40_ARATH,F4KH41_ARATH Inactive serine/threonine-protein kinase/endoribonuclease IRE1-like (Endoplasmic reticulum-to-nucleus signaling 1-like) (Inositol-requiring protein 1-like),Serine/threonine-protein kinase/endoribonuclease IRE1b (Endoplasmic reticulum-to-nucleus signaling 1-1) (Inositol-requiring protein 1-1) (AtIRE1-1) (Serine/threonine-protein kinase/endoribonuclease IRE1-1) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonuclease (EC 3.1.26.-)],Serine/threonine-protein kinase/endoribonuclease IRE1a (Endoplasmic reticulum-to-nucleus signaling 1-2) (Inositol-requiring protein 1-2) (AtIRE1-2) (Serine/threonine-protein kinase/endoribonuclease IRE1-2) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonuclease (EC 3.1.26.-)],Inositol requiring 1-1 DISRUPTION PHENOTYPE: No visible phenotype. Ire1a and ire1b double mutant is more sensitive to the ER stress inducer tunicamycin than the wild-type and is enable to give rise to the spliced bZIP60 mRNA form (PubMed:22355548). Ire1a and ire1b double mutant displays short roots and a ER stress-sensitive phenotype (PubMed:21914012). {ECO:0000269|PubMed:21482766, ECO:0000269|PubMed:21914012, ECO:0000269|PubMed:22355548, ECO:0000269|PubMed:22359644}.,DISRUPTION PHENOTYPE: No visible phenotype but shows enhanced susceptibility to a bacterial pathogen and deficiency in establishing systemic acquired resistance (SAR). Ire1a and ire1b double mutant is more sensitive to the ER stress inducer tunicamycin than the wild-type and is enable to give rise to the spliced bZIP60 mRNA form (PubMed:22355548). Ire1a and ire1b double mutant displays short roots and a ER stress-sensitive phenotype (PubMed:21914012). {ECO:0000269|PubMed:21482766, ECO:0000269|PubMed:21914012, ECO:0000269|PubMed:22355548, ECO:0000269|PubMed:22359644}. bZIP60 mRNA splicing is detectable in ire1b-1 (GABI_638B07) whereas it is completely abolished in ire1a-2 (SALK_018112)/ire1b-1 (GABI_638B07) double mutant.,IRE1-1 transcript levels appear to be the same in ire1-1/IRE1-1 heterozygous and IRE1-1 homozygous (i.e. wild-type) plants. However when heterozygotes are selfed no ire1-1 homozygous mutants are recovered.,bZIP60 mRNA splicing is completely abolished in ire1a-2 (SALK_018112)/ire1b-1 (GABI_638B07) double mutant whereas it is still detectable in ire1a-2 and ire1b-1 single mutants. ire1a-2/ire1b-1 double mutant is much more sensitive to tunicamycin than wild-type and ire1a-2 and ire1b-1 single mutant plants. Induction of a number of ER stress-inducible genes is much weaker in the ire1a-2/ire1b-1 double mutant than in the wild-type.,bZIP60 mRNA splicing is detectable in ire1a-2 (SALK_018112) whereas it is completely abolished in ire1a-2 (SALK_018112)/ire1b-1 (GABI_638B07) double mutant. FUNCTION: Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices bZIP60 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response transcriptional activator which then induces transcription of UPR target genes. Involved in organ growth regulation. Plays a role in plant immunity and abiotic stress responses. Required for ER stress-induced autophagy. {ECO:0000269|PubMed:11706177, ECO:0000269|PubMed:21482766, ECO:0000269|PubMed:21914012, ECO:0000269|PubMed:22355548, ECO:0000269|PubMed:22359644, ECO:0000269|PubMed:22701744, ECO:0000269|PubMed:23175745}.,FUNCTION: Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices bZIP60 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response transcriptional activator which then induces transcription of UPR target genes. Involved in organ growth regulation. Plays a role in plant immunity and abiotic stress responses. {ECO:0000269|PubMed:11706177, ECO:0000269|PubMed:12020828, ECO:0000269|PubMed:21914012, ECO:0000269|PubMed:22355548, ECO:0000269|PubMed:22359644}. R-ATH-381070; 2.7.11.1; 3.1.26.- 63260,99616,95138,100635,98131 Inactive serine/threonine-protein kinase/endoribonuclease IRE1-like (Endoplasmic reticulum-to-nucleus signaling 1-like) (Inositol-requiring protein 1-like),Serine/threonine-protein kinase/endoribonuclease IRE1b (Endoplasmic reticulum-to-nucleus signaling 1-1) (Inositol-requiring protein 1-1) (AtIRE1-1) (Serine/threonine-protein kinase/endoribonuclease IRE1-1) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonuclease (EC 3.1.26.-)],Serine/threonine-protein kinase/endoribonuclease IRE1a (Endoplasmic reticulum-to-nucleus signaling 1-2) (Inositol-requiring protein 1-2) (AtIRE1-2) (Serine/threonine-protein kinase/endoribonuclease IRE1-2) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonuclease (EC 3.1.26.-)],Inositol requiring 1-1 ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ribonuclease activity [GO:0004540]; mRNA processing [GO:0006397],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; ribonuclease activity [GO:0004540]; autophagy [GO:0006914]; defense response to bacterium, incompatible interaction [GO:0009816]; mRNA processing [GO:0006397]; positive regulation of autophagy in response to ER overload [GO:0034263]; regulation of transcription, DNA-templated [GO:0006355]; response to salicylic acid [GO:0009751]; response to unfolded protein [GO:0006986]; RNA splicing [GO:0008380]; transcription, DNA-templated [GO:0006351],endoplasmic reticulum [GO:0005783]; extrinsic component of endoplasmic reticulum membrane [GO:0042406]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; endoribonuclease activity [GO:0004521]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; activation of signaling protein activity involved in unfolded protein response [GO:0006987]; defense response to bacterium, incompatible interaction [GO:0009816]; endoplasmic reticulum unfolded protein response [GO:0030968]; mRNA processing [GO:0006397]; protein autophosphorylation [GO:0046777]; regulation of transcription, DNA-templated [GO:0006355]; response to salicylic acid [GO:0009751]; RNA splicing [GO:0008380]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; endoribonuclease activity [GO:0004521]; protein kinase activity [GO:0004672]; endoplasmic reticulum unfolded protein response [GO:0030968]; mRNA processing [GO:0006397]; positive regulation of autophagy in response to ER overload [GO:0034263]; RNA splicing, via endonucleolytic cleavage and ligation [GO:0000394],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; ribonuclease activity [GO:0004540]; mRNA processing [GO:0006397] TISSUE SPECIFICITY: Ubiquitous. Detected in the apical meristem, at leaf margins where vascular bundles end, in the anthers before pollen is formed and in the ovules at a very early stage of development. There is no expression in more mature embryos. Also strongly expressed in the cotyledons immediately after germination but not later on. {ECO:0000269|PubMed:11706177, ECO:0000269|PubMed:12020828}.,TISSUE SPECIFICITY: Ubiquitous. Detected in the vascular bundles of young plants, leaves, roots, seedlings and in the receptacles of flowers and vascular bundles of the petals. {ECO:0000269|PubMed:11706177, ECO:0000269|PubMed:12020828}. locus:2081551;,locus:2053928;,locus:2152886; AT3G11870,AT5G24360,AT2G17520 Serine threonine-protein kinase endoribonuclease Serine/threonine-protein kinase/endoribonuclease IRE1 (Endoplasmic reticulum-to-nucleus signaling 1) (Inositol-requiring protein 1) (OsIRE1) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonuclease (EC 3.1.26.-)] Q7XIT1 IRE1_ORYSJ IRE1 Os07g0471000 LOC_Os07g28820 OJ1103_E04.109 OsJ_24190 FUNCTION: Involved in endoplasmic reticulum (ER) stress response. Senses unfolded proteins in the lumen of the ER via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices bZIP50 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response (UPR) transcriptional activator, which then induces transcription of UPR target genes, such as luminal-binding protein (BiP) chaperones. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}. ENOG411EIBV Q8GXD2,A0A1P8BC51 Q8GXD2_ARATH,A0A1P8BC51_ARATH Uncharacterized protein At5g25210 (Uncharacterized protein At5g25210/F21J6_105),Uncharacterized protein 19325,24341 Uncharacterized protein At5g25210 (Uncharacterized protein At5g25210/F21J6_105),Uncharacterized protein locus:2146940; AT5G25210 NA NA NA NA NA NA NA NA ENOG411EIBW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0376600 protein A0A0P0V2N3 A0A0P0V2N3_ORYSJ Os01g0376600 OSNPB_010376600 ENOG411EIBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium/calmodulin dependent protein kinase II Association NA NA NA NA NA NA NA ENOG411EIBS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E33E ATHB-40,HB40 O23208,A0A1P8B6F4 ATB40_ARATH,A0A1P8B6F4_ARATH Homeobox-leucine zipper protein ATHB-40 (HD-ZIP protein ATHB-40) (Homeodomain transcription factor ATHB-40),Homeobox protein 40 FUNCTION: Probable transcription factor. {ECO:0000250}. 25080,25179 Homeobox-leucine zipper protein ATHB-40 (HD-ZIP protein ATHB-40) (Homeodomain transcription factor ATHB-40),Homeobox protein 40 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. locus:2115215; AT4G36740 homeobox-leucine zipper protein NA NA NA NA NA NA NA ENOG411E33D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E33C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF567 NA NA NA NA NA NA NA ENOG411E33B RPL32A,RPL32B P49211,Q9FHG2 RL321_ARATH,RL322_ARATH 60S ribosomal protein L32-1,60S ribosomal protein L32-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15503,15475 60S ribosomal protein L32-1,60S ribosomal protein L32-2 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255]; translation [GO:0006412],cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412] locus:2117696;,locus:2151471; AT4G18100,AT5G46430 60S ribosomal protein Os09g0501700 protein,Os09g0502000 protein (cDNA clone:J013126M04, full insert sequence),Os09g0501100 protein (Os09g0501200 protein) (cDNA clone:001-121-A02, full insert sequence) (cDNA clone:J023130H04, full insert sequence),Os08g0524600 protein (Fragment) B9G4E8,Q0J0Q8,B7E905,A0A0P0XID1 B9G4E8_ORYSJ,Q0J0Q8_ORYSJ,B7E905_ORYSJ,A0A0P0XID1_ORYSJ Os09g0501700 OsJ_29906 OSNPB_090501700,Os09g0502000 Os09g0502000 OsJ_29908 OSNPB_090502000,Os09g0501200 Os09g0501100 OSNPB_090501200,Os08g0524600 OSNPB_080524600 ENOG411E8SS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C3H1 NA NA NA NA NA NA NA ENOG411E8SU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E33T NSRA,NSRB A1A6K6,F4HWF9,A0A1P8ANM3,A0A1P8AWC8,A0A1P8ANN1,A0A1P8ANM6 NSRA_ARATH,NSRB_ARATH,A0A1P8ANM3_ARATH,A0A1P8AWC8_ARATH,A0A1P8ANN1_ARATH,A0A1P8ANM6_ARATH Nuclear speckle RNA-binding protein A (AtNSRA),Nuclear speckle RNA-binding protein B (AtNSRB),Nucleic acid/nucleotide binding protein,RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: No visible phenotype. Nsra and nsrb double mutants are less sensitive to auxin. {ECO:0000269|PubMed:25073154}. FUNCTION: Alternative splicing (AS) regulator that binds to specific mRNAs and modulates auxin effects on the transcriptome. Displaced from its targets upon binding to AS competitor long non-coding RNA (ASCO-RNA). {ECO:0000269|PubMed:25073154}. 25420,46158,38885,19417,23202,28770 Nuclear speckle RNA-binding protein A (AtNSRA),Nuclear speckle RNA-binding protein B (AtNSRB),Nucleic acid/nucleotide binding protein,RNA-binding (RRM/RBD/RNP motifs) family protein nuclear speck [GO:0016607]; snRNA stem-loop binding [GO:0035614]; mRNA splicing, via spliceosome [GO:0000398],RNA binding [GO:0003723],integral component of membrane [GO:0016021]; RNA binding [GO:0003723] TISSUE SPECIFICITY: Expressed in root meristems, lateral root primordia and root vascular tissues. {ECO:0000269|PubMed:25073154}.,TISSUE SPECIFICITY: Isoform 1: Expressed in root meristems, lateral root primordia, root vascular tissues and cotyledon vascular tissues. Isoform 2: Expressed in root meristems, lateral root primordia and root vascular tissues. {ECO:0000269|PubMed:25073154}. locus:2025232;,locus:2014937; AT1G76940,AT1G21320 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os09g0527100 protein (cDNA clone:002-108-A10, full insert sequence) B7E9N3 B7E9N3_ORYSJ Os09g0527100 OSNPB_090527100 ENOG411E8SA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CLE family OsCLE205 protein (Os02g0809300 protein) (cDNA clone:J033127D10, full insert sequence) Q6K997 Q6K997_ORYSJ OsCLE205 Os02g0809300 OJ1112_G06.21 OJ1520_C09.33 OSNPB_020809300 ENOG411E33W Q9S9K7,O04848 H2AXB_ARATH,H2AXA_ARATH Probable histone H2AXb (HTA3),Probable histone H2AXa (HTA5) FUNCTION: Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response to low doses of ionizing radiation and for efficient repair of DNA double strand breaks (DSBs) specifically when modified by C-terminal phosphorylation (By similarity). {ECO:0000250}. 14783,14813 Probable histone H2AXb (HTA3),Probable histone H2AXa (HTA5) nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342],nuclear chromatin [GO:0000790]; nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342] TISSUE SPECIFICITY: Expressed in meristems and dividing cells. {ECO:0000269|PubMed:16751347}.,TISSUE SPECIFICITY: Expressed mainly in roots. {ECO:0000269|PubMed:16751347}. locus:2199486;,locus:2036054; AT1G54690,AT1G08880 histone h2a Probable histone H2AXb,Probable histone H2AXa,Histone H2A (Fragment) Q2QPG9,Q8LLP5,A0A0P0W2D5 H2AXB_ORYSJ,H2AXA_ORYSJ,A0A0P0W2D5_ORYSJ Os12g0530000 LOC_Os12g34510,Os03g0721900 LOC_Os03g51200 B1377B10.25 OsJ_011892 OSJNBa0031O09.03,Os03g0721900 OSNPB_030721900 FUNCTION: Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response to low doses of ionizing radiation and for efficient repair of DNA double strand breaks (DSBs) specifically when modified by C-terminal phosphorylation (By similarity). {ECO:0000250}. ENOG411E8SK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0400700 protein A0A0P0XMP3 A0A0P0XMP3_ORYSJ Os09g0400700 OSNPB_090400700 ENOG411E33Q DOGL4 Q84JC2 DOGL4_ARATH Protein DOG1-like 4 DISRUPTION PHENOTYPE: No germination phenotype. {ECO:0000269|PubMed:17065317}. 27024 Protein DOG1-like 4 sequence-specific DNA binding [GO:0043565]; transcription, DNA-templated [GO:0006351] locus:2124117; AT4G18650 transcription NA NA NA NA NA NA NA ENOG411E33P LBD27 Q9STS6 LBD27_ARATH LOB domain-containing protein 27 (ASYMMETRIC LEAVES 2-like protein 29) (AS2-like protein 29) Male gametophyte defective; Homozygotes are viable: Abnormal pollen-S. Park-2010 37334 LOB domain-containing protein 27 (ASYMMETRIC LEAVES 2-like protein 29) (AS2-like protein 29) nucleus [GO:0005634]; microsporogenesis [GO:0009556]; pollen development [GO:0009555]; regulation of asymmetric cell division [GO:0009786] locus:2100332; AT3G47870 lob domain-containing protein Os01g0571800 protein A2ZUK5 A2ZUK5_ORYSJ Os01g0571800 Os01g0571800 OsJ_02291 OSNPB_010571800 ENOG411E8S9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0469200 protein B9FX48 B9FX48_ORYSJ Os07g0469200 OsJ_24184 OSNPB_070469200 ENOG411E33R CYTB5-E Q42342 CYB5E_ARATH Cytochrome b5 isoform E (AtCb5-E) (Cytochrome b5 isoform 1) (Cytochrome b5 isoform A) (AtCb5-A) FUNCTION: Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases, including fatty acid desaturases. {ECO:0000269|PubMed:22384013, ECO:0000269|PubMed:9880378}. 15084 Cytochrome b5 isoform E (AtCb5-E) (Cytochrome b5 isoform 1) (Cytochrome b5 isoform A) (AtCb5-A) chloroplast thylakoid membrane [GO:0009535]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9880378}. locus:2168666; AT5G53560 Cytochrome b5 Os10g0518200 protein (Fragment) A0A0P0XWQ8 A0A0P0XWQ8_ORYSJ Os10g0518200 OSNPB_100518200 ENOG411DQB3 FYPP3,FYPP1 Q9LHE7,Q9SX52 FYPP3_ARATH,FYPP1_ARATH Phytochrome-associated serine/threonine-protein phosphatase 3 (AtFyPP3) (EC 3.1.3.16) (Protein EMBRYO DEFECTIVE 2736),Phytochrome-associated serine/threonine-protein phosphatase 1 (AtFyPP1) (EC 3.1.3.16) Embryo defective; Globular-D. Meinke-2003 FUNCTION: Dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms. Plays a major role in the photoperiodic control of flowering time in long days by modulating phytochrome signals in flowering time control. {ECO:0000269|PubMed:12468726}.,FUNCTION: Dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms. Plays a major role in the photoperiodic control of flowering time in long days by modulating phytochrome signals in flowering time control (By similarity). {ECO:0000250, ECO:0000269|PubMed:12468726}. 3.1.3.16 34845,34819 Phytochrome-associated serine/threonine-protein phosphatase 3 (AtFyPP3) (EC 3.1.3.16) (Protein EMBRYO DEFECTIVE 2736),Phytochrome-associated serine/threonine-protein phosphatase 1 (AtFyPP1) (EC 3.1.3.16) cytoplasm [GO:0005737]; nucleus [GO:0005634]; protein phosphatase type 2A complex [GO:0000159]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine kinase activity [GO:0004674]; negative regulation of flower development [GO:0009910],cytoplasm [GO:0005737]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721] TISSUE SPECIFICITY: Mostly expressed in flowers. Also detected to a lower extent in stems and leaves. {ECO:0000269|PubMed:12468726}. locus:2095380;,locus:2011907; AT3G19980,AT1G50370 serine threonine-protein phosphatase Serine/threonine-protein phosphatase (EC 3.1.3.16) Q8RZZ3 Q8RZZ3_ORYSJ Os01g0691700 Os01g0691700 OsJ_03087 OSNPB_010691700 P0034C09.18 ENOG411DQBZ TKL-2,TKL-1,AtTKL1 F4IW47,Q8RWV0,F4JBY2 TKTC2_ARATH,TKTC1_ARATH,F4JBY2_ARATH Transketolase-2, chloroplastic (TK) (EC 2.2.1.1),Transketolase-1, chloroplastic (TK) (EC 2.2.1.1),Transketolase FUNCTION: Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively (By similarity). Could act as a stress sensor involved in adaptation process. {ECO:0000250, ECO:0000269|PubMed:22214485}. PATHWAY: Carbohydrate biosynthesis; Calvin cycle. ARA:AT2G45290-MONOMER;,ARA:AT3G60750-MONOMER; R-ATH-163754;R-ATH-71336; 2.2.1.1 79922,79968,79839 Transketolase-2, chloroplastic (TK) (EC 2.2.1.1),Transketolase-1, chloroplastic (TK) (EC 2.2.1.1),Transketolase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; plastid [GO:0009536]; metal ion binding [GO:0046872]; transketolase activity [GO:0004802]; reductive pentose-phosphate cycle [GO:0019253]; response to cadmium ion [GO:0046686],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; metal ion binding [GO:0046872]; transketolase activity [GO:0004802]; reductive pentose-phosphate cycle [GO:0019253]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651],transketolase activity [GO:0004802]; metabolic process [GO:0008152] locus:2050837;,locus:2101871; AT2G45290,AT3G60750 Transketolase Os06g0133800 protein (Fragment),OSJNBa0072D08.7 protein (Os04g0266900 protein) (cDNA clone:J023019B19, full insert sequence) Q0DEU8,Q7XWP9,A0A0P0WSQ4 Q0DEU8_ORYSJ,Q7XWP9_ORYSJ,A0A0P0WSQ4_ORYSJ Os06g0133800 Os06g0133800 OSNPB_060133800,Os04g0266900 OsJ_14067 OSJNBa0072D08.7 OSNPB_040266900,Os06g0133800 OSNPB_060133800 ENOG411DQBT MSI1 O22467 MSI1_ARATH Histone-binding protein MSI1 (CAF-1 p48 homolog) (Chromatin assembly factor 1 subunit MSI1) (CAF-1 subunit MSI1) (Protein MULTICOPY SUPPRESSOR OF IRA 1) (AtMSI1) (Protein medicis) (WD-40 repeat-containing protein MSI1) ethanolamine-phosphate cytidylyltransferase activity is reduced to 74%. Seedling phosphatidylethanolamine content is reduced by 20%. Dwarf when grown at 8oC. Earlier senescence of cotyladons and mature leaves. Pale green and smaller seeds. Delay in embryo maturation. Reduced fertility.,homozygous are embryo lethal arrested at the globular stage and do not undergo transition to heart stage,Defective pollen development. Embryo defective; 50% defective seeds-W. Grusseim-2004 FUNCTION: Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair, and the fertilization independent seed (FIS) complex, a polycomb group protein complex which is required to maintain the transcriptionally repressive state of homeotic genes throughout development. Required for several aspects of plant development including normal leaf expansion, correct development of flowers, normal endosperm development, repression of parthenogenetic seed development and repression of floral homeotic genes in leaf tissue. Also required for the recruitment of chromosomal DNA into heterochromatic chromocenters. Also involved in regulation of imprinted genes. Acts together with RBR1 to repress the expression of MET1 during female gametogenesis. This in turn activates expression of the imprinted genes FIS2 and FWA. {ECO:0000269|PubMed:11163246, ECO:0000269|PubMed:12736201, ECO:0000269|PubMed:12970192, ECO:0000269|PubMed:15151989, ECO:0000269|PubMed:15854908, ECO:0000269|PubMed:16452472, ECO:0000269|PubMed:17021044, ECO:0000269|PubMed:18045841, ECO:0000269|PubMed:18700816}. R-ATH-212300;R-ATH-2559580;R-ATH-3214847;R-ATH-3214858;R-ATH-8951664; 48195 Histone-binding protein MSI1 (CAF-1 p48 homolog) (Chromatin assembly factor 1 subunit MSI1) (CAF-1 subunit MSI1) (Protein MULTICOPY SUPPRESSOR OF IRA 1) (AtMSI1) (Protein medicis) (WD-40 repeat-containing protein MSI1) chloroplast [GO:0009507]; chromatin silencing complex [GO:0005677]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleus [GO:0005634]; protein complex [GO:0043234]; cell proliferation [GO:0008283]; covalent chromatin modification [GO:0016569]; DNA replication [GO:0006260]; embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; heterochromatin assembly [GO:0031507]; heterochromatin organization [GO:0070828]; leaf development [GO:0048366]; multicellular organism development [GO:0007275]; pollen development [GO:0009555]; positive regulation of cell cycle [GO:0045787]; regulation of flower development [GO:0009909]; regulation of gene expression by genetic imprinting [GO:0006349]; regulation of genetic imprinting [GO:2000653]; regulation of transcription, DNA-templated [GO:0006355]; seed coat development [GO:0010214]; seed development [GO:0048316]; transcription, DNA-templated [GO:0006351]; trichome differentiation [GO:0010026] DEVELOPMENTAL STAGE: Expressed during female gametophyte development. {ECO:0000269|PubMed:18700816}. TISSUE SPECIFICITY: Ubiquitously expressed. Strongly expressed in floral buds and flowers, the female gametophyte and the sporophytic tissue of the ovules. Also strongly expressed in developing embryos following fertilization. {ECO:0000269|PubMed:12736201}. locus:2161253; AT5G58230 WD-40 repeat-containing protein Histone-binding protein MSI1 homolog (CAF-1 p48 homolog) (Chromatin assembly factor 1 subunit MSI1 homolog) (CAF-1 subunit MSI1 homolog) (WD-40 repeat-containing protein MSI1 homolog) Q10G81 MSI1_ORYSJ MSI1 Os03g0640100 LOC_Os03g43890 B1394A07.14 FUNCTION: Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism such as the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair (By similarity). {ECO:0000250}. ENOG411DQBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CYCLOPS (Os06g0115600 protein) A9XMT5 A9XMT5_ORYSJ Os06g0115600 OSNPB_060115600 ENOG411DQBJ P46283 S17P_ARATH Sedoheptulose-1,7-bisphosphatase, chloroplastic (EC 3.1.3.37) (SED(1,7)P2ase) (Sedoheptulose bisphosphatase) (SBPase) PATHWAY: Carbohydrate biosynthesis; Calvin cycle. ARA:AT3G55800-MONOMER; 3.1.3.37 42414 Sedoheptulose-1,7-bisphosphatase, chloroplastic (EC 3.1.3.37) (SED(1,7)P2ase) (Sedoheptulose bisphosphatase) (SBPase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; thylakoid [GO:0009579]; fructose 1,6-bisphosphate 1-phosphatase activity [GO:0042132]; metal ion binding [GO:0046872]; sedoheptulose-bisphosphatase activity [GO:0050278]; carbohydrate biosynthetic process [GO:0016051]; defense response to bacterium [GO:0042742]; fructose 1,6-bisphosphate metabolic process [GO:0030388]; fructose 6-phosphate metabolic process [GO:0006002]; fructose metabolic process [GO:0006000]; gluconeogenesis [GO:0006094]; reductive pentose-phosphate cycle [GO:0019253]; starch biosynthetic process [GO:0019252]; sucrose biosynthetic process [GO:0005986] TISSUE SPECIFICITY: Expressed in all tissues examined except root. Highest levels found in leaves and flowers. locus:2078941; AT3G55800 Sedoheptulose-bisphosphatase Os04g0234600 protein B9F813 B9F813_ORYSJ Os04g0234600 OsJ_13468 OSNPB_040234600 ENOG411E6QS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E6QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C1-like domain NA NA NA NA NA NA NA ENOG411E3AR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0193400 protein (cDNA clone:J023020E22, full insert sequence) Q5SNG7 Q5SNG7_ORYSJ Os01g0193400 OSNPB_010193400 P0001B06.3 P0671B11.34 ENOG411E6T9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NAC4 protein (Os01g0925400 protein) (Putative development regulation gene OsNAC4) (cDNA clone:J013106M04, full insert sequence) (cDNA clone:J013153H06, full insert sequence) Q5JK15 Q5JK15_ORYSJ Os01g0925400 Os01g0925400 B1033B05.29 OSJNBa0093F16.3 OSNPB_010925400 ENOG411E3AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Coiled-coil domain containing 146 NA NA NA NA NA NA NA ENOG411E3AB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3228) NA NA NA NA NA NA NA ENOG411E3AE Q9FKX3 Q9FKX3_ARATH Cell wall integrity/stress response component 22540 Cell wall integrity/stress response component chloroplast [GO:0009507]; chloroplast stroma [GO:0009570] locus:2156892; AT5G66090 Inherit from euNOG: protein of CLR family Os09g0541700 protein (cDNA clone:001-042-F05, full insert sequence) (cDNA clone:J013000O02, full insert sequence) Q7XJ15 Q7XJ15_ORYSJ Os09g0541700 B1274F11.39 OsJ_30186 OSNPB_090541700 P0478E02.11 ENOG411E3AK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0112401 protein A0A0P0Y6F7 A0A0P0Y6F7_ORYSJ Os12g0112401 OSNPB_120112401 ENOG411E3AJ MUA22.2 Q94BY3,A0A1P8BF69 Q94BY3_ARATH,A0A1P8BF69_ARATH Translocon-associated protein subunit beta (TRAP-beta) (Signal sequence receptor subunit beta),Translocon-associated protein beta (TRAPB) family protein FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. {ECO:0000256|PIRNR:PIRNR016400}. 21105,17225 Translocon-associated protein subunit beta (TRAP-beta) (Signal sequence receptor subunit beta),Translocon-associated protein beta (TRAPB) family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; cotranslational protein targeting to membrane [GO:0006613] locus:2174678; AT5G14030 translocon-associated protein Os01g0102700 protein Q0JRG3 Q0JRG3_ORYSJ Os01g0102700 Os01g0102700 OSNPB_010102700 ENOG411E6T3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chaperone protein dnaJ NA NA NA NA NA NA NA ENOG411E6T2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF822) Os01g0176900 protein A0A0P0UYT3 A0A0P0UYT3_ORYSJ Os01g0176900 OSNPB_010176900 ENOG411E53C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0186000 protein (Fragment) A0A0P0UZM3 A0A0P0UZM3_ORYSJ Os01g0186000 OSNPB_010186000 ENOG411EF07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF06 Q9LN60 Q9LN60_ARATH At1g19380 (F18O14.10) (Sugar, putative (DUF1195)) (Uncharacterized protein At1g19380) 16253 At1g19380 (F18O14.10) (Sugar, putative (DUF1195)) (Uncharacterized protein At1g19380) integral component of membrane [GO:0016021] locus:2016372; AT1G19380 Protein of unknown function (DUF1195) NA NA NA NA NA NA NA ENOG411E53T LTP10 Q9LZV9 NLTPA_ARATH Non-specific lipid-transfer protein 10 (LTP 10) FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity). {ECO:0000250}. 12326 Non-specific lipid-transfer protein 10 (LTP 10) membrane [GO:0016020]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; lipid transport [GO:0006869] locus:2181022; AT5G01870 Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) Non-specific lipid-transfer protein,Non-specific lipid-transfer protein (Fragment) Q5QM60,A0A0P0WNP9 Q5QM60_ORYSJ,A0A0P0WNP9_ORYSJ Os01g0822900 Os01g0822900 OsJ_03904 OSNPB_010822900 P0031D02.1 P0485B12.33,Os05g0477900 OSNPB_050477900 FUNCTION: Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. {ECO:0000256|RuleBase:RU000628}. ENOG411E53Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411E53X Q8RWC8 Q8RWC8_ARATH At1g68330 (Membrane-associated kinase regulator) (Uncharacterized protein At1g68330) 29215 At1g68330 (Membrane-associated kinase regulator) (Uncharacterized protein At1g68330) protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777] locus:2199347; AT1G68330 NA NA NA NA NA NA NA NA ENOG411E6Q1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cysteine proteinase inhibitor Cysteine proteinase inhibitor 8 (Oryzacystatin VIII) (OC-VIII) (Oryzacystatin-8),Putative cysteine proteinase inhibitor 11 (Oryzacystatin XI) (OC-XI) (Oryzacystatin-11) Q10J94,Q6K309 CYT8_ORYSJ,CYT11_ORYSJ Os03g0429000 LOC_Os03g31510 OsJ_11358,Os09g0255200 LOC_Os09g08100 OsJ_28554 OSJNBb0066C12.33 FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. ENOG411EF0R SDC Q9SHY1,Q9SHX9,Q3EBY8,P0C2F5,Q9C656,A0A1P8AN84 FB317_ARATH,FB72_ARATH,FB111_ARATH,Y1657_ARATH,Q9C656_ARATH,A0A1P8AN84_ARATH Probable F-box protein At1g65740,Putative F-box protein At1g65770,F-box protein At2g17690 (Protein SUPPRESSOR OF DRM1 DRM2 CMT3),Uncharacterized protein At1g65760,F-box protein (Uncharacterized protein F13D13.1),Ascorbic acid mannose pathway regulator Resistant to ozone-C. Nessler-2009 FUNCTION: Involved in heat stress response. Contributes to recovery from heat stress. {ECO:0000269|PubMed:25411840}. 42298,41588,48053,41105,26199,7362 Probable F-box protein At1g65740,Putative F-box protein At1g65770,F-box protein At2g17690 (Protein SUPPRESSOR OF DRM1 DRM2 CMT3),Uncharacterized protein At1g65760,F-box protein (Uncharacterized protein F13D13.1),Ascorbic acid mannose pathway regulator chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; double-strand break repair via homologous recombination [GO:0000724],negative regulation of L-ascorbic acid biosynthetic process [GO:2000083],chromosome [GO:0005694]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; DNA binding [GO:0003677]; four-way junction helicase activity [GO:0009378]; double-strand break repair via homologous recombination [GO:0000724]; response to heat [GO:0009408] locus:2018501;,locus:2018526;,locus:2827938;,locus:2018541;,locus:2824340; AT1G65740,AT1G65770,AT2G17690,AT1G65760,AT1G57906 F-box protein NA NA NA NA NA NA NA ENOG411EF0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EF0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFR Q56YM4 Q56YM4_ARATH Transmembrane protein 9006 Transmembrane protein integral component of membrane [GO:0016021] locus:4010713958; AT5G15265 NA NA NA NA NA NA NA NA ENOG411EIFS Q9ZVA3 FDL12_ARATH Putative F-box/FBD/LRR-repeat protein At1g78840 50510 Putative F-box/FBD/LRR-repeat protein At1g78840 locus:2037528; AT1G78840 FBD NA NA NA NA NA NA NA ENOG411EIFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Conserved hypothetical protein NA NA NA NA NA NA NA ENOG411EIFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF784 NA NA NA NA NA NA NA ENOG411EIFC OFP9 P0DKG3,P0DKG2,A0A1P8B759,F4JE12,F4JE10,F4ITH6,F4ITH5 OFP9_ARATH,Y3473_ARATH,A0A1P8B759_ARATH,F4JE12_ARATH,F4JE10_ARATH,F4ITH6_ARATH,F4ITH5_ARATH Probable transcription repressor OFP9 (Ovate family protein 9) (AtOFP9),Putative transmembrane protein At3g54730,Transcription repressor (Fragment),Transcription repressor FUNCTION: Probable transcriptional repressor that may regulate multiple aspects of plant growth and development. {ECO:0000250}. MISCELLANEOUS: Plants over-expressing OFP9 have no visible phenotype. {ECO:0000305|PubMed:21886836}. 48150,44157,32969,12952,17091,16591,13614 Probable transcription repressor OFP9 (Ovate family protein 9) (AtOFP9),Putative transmembrane protein At3g54730,Transcription repressor (Fragment),Transcription repressor nucleus [GO:0005634]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021] locus:2102475;,locus:2051935; AT4G04030,AT3G54730,AT2G19850 NA NA NA NA NA NA NA NA ENOG411EIFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0530801 protein (Fragment),Os03g0300801 protein (Fragment) A0A0P0WD07,A0A0P0VX81 A0A0P0WD07_ORYSJ,A0A0P0VX81_ORYSJ Os04g0530801 OSNPB_040530801,Os03g0300801 OSNPB_030300801 ENOG411EIFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIFI A8MS20 FB350_ARATH F-box protein At2g43440 46192 F-box protein At2g43440 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2058136; AT2G43440 FBOX Os07g0242400 protein (Fragment) A0A0P0X458 A0A0P0X458_ORYSJ Os07g0242400 OSNPB_070242400 ENOG411EIFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411EIFK F27M3_5 Q8S8A8,Q9C4Z8 Q8S8A8_ARATH,Q9C4Z8_ARATH Glycine-rich protein (Predicted protein),At1g31750 (Proline-rich family protein) (Uncharacterized protein At1g31750) (Uncharacterized protein F27M3_5) (Uncharacterized protein F5M6.24) 11727,18395 Glycine-rich protein (Predicted protein),At1g31750 (Proline-rich family protein) (Uncharacterized protein At1g31750) (Uncharacterized protein F27M3_5) (Uncharacterized protein F5M6.24) locus:2827455;,locus:2028581; AT2G04063,AT1G31750 NA NA NA NA NA NA NA NA ENOG411EIFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIFN AGP40 Q8LD43 AGP40_ARATH Probable arabinogalactan protein 40 FUNCTION: Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death. {ECO:0000305}. 6156 Probable arabinogalactan protein 40 anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886] locus:505006358; AT3G20865 NA NA NA NA NA NA NA NA ENOG411EF0J T24C10.5 Q9FZ38,A0A1P8AUP0 Q9FZ38_ARATH,A0A1P8AUP0_ARATH GRF zinc finger / Zinc knuckle protein (T24C10.5 protein) (Uncharacterized protein F14C21.33),GRF zinc finger / Zinc knuckle protein 38617,43224 GRF zinc finger / Zinc knuckle protein (T24C10.5 protein) (Uncharacterized protein F14C21.33),GRF zinc finger / Zinc knuckle protein nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2010985; AT1G54930 Zinc knuckle NA NA NA NA NA NA NA ENOG411E6TU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411E2X5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0462200 protein) (cDNA clone:001-107-E04, full insert sequence),Os03g0355500 protein,Os07g0141300 protein Q8LNQ3,A3AI07,Q8H4L1 Q8LNQ3_ORYSJ,A3AI07_ORYSJ,Q8H4L1_ORYSJ Os10g0462200 LOC_Os10g32444 Os10g0462200 OSJNBa0042E19.5 OSNPB_100462200,Os03g0355500 OsJ_10873 OSNPB_030355500,OJ1351_C05.111 Os07g0141300 OSNPB_070141300 ENOG411DTD3 HPTG1 Q94F27 B3GTB_ARATH Hydroxyproline O-galactosyltransferase HPGT1 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 11) DISRUPTION PHENOTYPE: Reduced levels of arabinogalactan proteins. {ECO:0000269|PubMed:25600942}. FUNCTION: Possesses hydroxyproline O-galactosyltransferase activity. Transfers galactose from UDP-galactose to hydroxyproline residues in the arabinogalactan proteins (AGPs). Is specific for AGPs containing non-contiguous peptidyl hydroxyproline residues. The addition of galactose onto the peptidyl hydroxyproline residues in AGP core proteins represents the first committed step in arabinogalactan polysaccharide addition. AGP glycans play essential roles in both vegetative and reproductive plant growth. {ECO:0000269|PubMed:25600942}. PATHWAY: Protein modification; protein glycosylation. {ECO:0000305}. 2.4.1.- 37768 Hydroxyproline O-galactosyltransferase HPGT1 (EC 2.4.1.-) (Beta-1,3-galactosyltransferase 11) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; hydroxyproline O-galactosyltransferase activity [GO:1990714]; arabinogalactan protein metabolic process [GO:0010405]; protein O-linked glycosylation via hydroxyproline [GO:0018258] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:25600942}. locus:2154247; AT5G53340 beta-13-galactosyltransferase 11-like Hexosyltransferase (EC 2.4.1.-) Q6ZA16 Q6ZA16_ORYSJ Os08g0386700 OSNPB_080386700 P0434E03.15 ENOG411DTD7 Q0WUQ7 Q0WUQ7_ARATH Metallopeptidase M24 family protein (Putative prolidase) ARA:AT4G29490-MONOMER; 54401 Metallopeptidase M24 family protein (Putative prolidase) aminopeptidase activity [GO:0004177]; manganese ion binding [GO:0030145] locus:2118284; AT4G29490 xaa-Pro dipeptidase Os02g0224400 protein (Putative Xaa-Pro dipeptidase) (cDNA clone:002-105-E02, full insert sequence) Q6Z8B5 Q6Z8B5_ORYSJ Os02g0224400 OsJ_05945 OSNPB_020224400 P0470A03.20 ENOG411DTDG ARF1 Q8L7G0,F4ID31 ARFA_ARATH,F4ID31_ARATH Auxin response factor 1,Auxin response factor no obvious auxin-related growth phenotype FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 73668,73216 Auxin response factor 1,Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; identical protein binding [GO:0042802]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; leaf senescence [GO:0010150]; negative regulation of transcription, DNA-templated [GO:0045892]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}. TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. locus:2025991; AT1G59750 auxin response factor Auxin response factor 7,Auxin response factor 9 Q6YVY0,Q0JCZ4 ARFG_ORYSJ,ARFI_ORYSJ ARF7 Os02g0557200 LOC_Os02g35140 OsJ_07141 OSJNBb0038F20.6,ARF9 Os04g0442000 LOC_Os04g36054 OSJNBa0064D20.11 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). ENOG411DTDM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Core-2/I-Branching enzyme Os04g0607100 protein A0A0P0WEU1 A0A0P0WEU1_ORYSJ Os04g0607100 OSNPB_040607100 ENOG411E2UI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA15 (Indoleacetic acid-induced protein 15) Q6AT10 IAA15_ORYSJ IAA15 Os05g0178600 LOC_Os05g08570 OSJNBa0029B02.19 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411E2UN HSFB2A Q9SCW4 HFB2A_ARATH Heat stress transcription factor B-2a (AtHsfB2a) (AtHsf-22) (Heat shock factor protein 6) (HSF 6) (Heat shock transcription factor 6) (HSTF 6) FUNCTION: Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). R-ATH-3371453;R-ATH-3371511;R-ATH-3371568;R-ATH-3371571; 34051 Heat stress transcription factor B-2a (AtHsfB2a) (AtHsf-22) (Heat shock factor protein 6) (HSF 6) (Heat shock transcription factor 6) (HSTF 6) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] locus:2174043; AT5G62020 Heat stress transcription factor NA NA NA NA NA NA NA ENOG411EEW3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Saposin-like type B region 1 NA NA NA NA NA NA NA ENOG411EEW2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain NA NA NA NA NA NA NA ENOG411EEW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NAC domain protein IPR003441 source NA NA NA NA NA NA NA ENOG411EEW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter NA NA NA NA NA NA NA ENOG411EEW6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EEW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os09g0542600 protein (Zinc finger protein-like) Q651B8 Q651B8_ORYSJ Os09g0542600 Os09g0542600 B1274F11.48 OsJ_30192 OSNPB_090542600 ENOG411EEWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Binding-protein-dependent transport system inner membrane component NA NA NA NA NA NA NA ENOG411EEWG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os01g0776300 protein,Os01g0774133 protein A0A0N7KDU6,A0A0P0V8S8 A0A0N7KDU6_ORYSJ,A0A0P0V8S8_ORYSJ Os01g0776300 OSNPB_010776300,Os01g0774133 OSNPB_010774133 ENOG411EEWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0104200 protein (Fragment),Os11g0104240 protein,Os11g0104220 protein A0A0P0Y5X9,A0A0P0XY67,A0A0P0XXS4 A0A0P0Y5X9_ORYSJ,A0A0P0XY67_ORYSJ,A0A0P0XXS4_ORYSJ Os12g0104200 OSNPB_120104200,Os11g0104240 OSNPB_110104240,Os11g0104220 OSNPB_110104220 ENOG411EEWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0367201 protein A0A0P0W978 A0A0P0W978_ORYSJ Os04g0367201 OSNPB_040367201 ENOG411EEWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Papain family cysteine protease NA NA NA NA NA NA NA ENOG411EEWI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEWR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (By similarity) NA NA NA NA NA NA NA ENOG411EEWQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal L40e family Os07g0489500 protein A0A0P0X6U8 A0A0P0X6U8_ORYSJ Os07g0489500 OSNPB_070489500 ENOG411EEWP P28493 PR5_ARATH Pathogenesis-related protein 5 (PR-5) FUNCTION: Partially responsible for acquired pathogen resistance. 25252 Pathogenesis-related protein 5 (PR-5) apoplast [GO:0048046]; cell wall [GO:0005618]; vacuole [GO:0005773]; regulation of anthocyanin biosynthetic process [GO:0031540]; response to cadmium ion [GO:0046686]; response to UV-B [GO:0010224]; response to virus [GO:0009615]; systemic acquired resistance [GO:0009627] locus:2037235; AT1G75040 THN NA NA NA NA NA NA NA ENOG411EEWW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0704500 protein (Fragment) Q0D9Q0 Q0D9Q0_ORYSJ Os06g0704500 Os06g0704500 OSNPB_060704500 ENOG411EEWT OFP18 Q9SVD5 OFP18_ARATH Transcription repressor OFP18 (Ovate family protein 18) (AtOFP18) FUNCTION: Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors. {ECO:0000269|PubMed:21886836}. MISCELLANEOUS: Plants over-expressing OFP18 show small rosette size, late flowering, reduced fertilization and blunt-end siliques. {ECO:0000305|PubMed:21886836}. 31519 Transcription repressor OFP18 (Ovate family protein 18) (AtOFP18) nucleus [GO:0005634]; negative regulation of transcription, DNA-templated [GO:0045892]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:21886836}. locus:2079969; AT3G52540 Pfam:DUF623 NA NA NA NA NA NA NA ENOG411EEWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEWX AGL83,MBB18.17 Q9FGZ5,Q7X9H5,Q9FFV9 Q9FGZ5_ARATH,Q7X9H5_ARATH,Q9FFV9_ARATH AGAMOUS-like 83 (Similarity to MADS-box protein),MADS-box protein (MADS-box protein AGL84) (MADS-box transcription factor family protein),MADS-box protein AGL73 (MADS-box protein-like) (MADS-box transcription factor family protein) 32426,37396,38849 AGAMOUS-like 83 (Similarity to MADS-box protein),MADS-box protein (MADS-box protein AGL84) (MADS-box transcription factor family protein),MADS-box protein AGL73 (MADS-box protein-like) (MADS-box transcription factor family protein) nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; protein dimerization activity [GO:0046983]; transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0000982]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2157874;,locus:2158039;,locus:2159848; AT5G49490,AT5G49420,AT5G38620 MADS-box protein NA NA NA NA NA NA NA ENOG411E2UZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: (RNA) helicase NA NA NA NA NA NA NA ENOG411E2UX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CSL zinc finger Os08g0474600 protein (cDNA clone:J033050J19, full insert sequence),DNAJ heat shock N-terminal domain-containing protein-like (Os09g0460000 protein) (cDNA clone:J033070H16, full insert sequence) Q0J522,Q67J13 Q0J522_ORYSJ,Q67J13_ORYSJ Os08g0474600 Os08g0474600 OsJ_27653 OSNPB_080474600,Os09g0460000 B1045B05.42 OsJ_29646 OSJNBa0054F02.20 OSNPB_090460000 ENOG411E5DN HS1 Q9LUV2 POP3_ARATH Stress-response A/B barrel domain-containing protein HS1 (Pop3 family protein At3g17210) (Protein HEAT STABLE 1) (AtHS1) FUNCTION: Heat stable protein involved in defense against fungal pathogens. Possesses antifungal activity against diverse pathogenic fungi. Possesses antimicrobial activity. Possesses ribonuclease activity. {ECO:0000269|PubMed:17720140}. 12184 Stress-response A/B barrel domain-containing protein HS1 (Pop3 family protein At3g17210) (Protein HEAT STABLE 1) (AtHS1) cytosol [GO:0005829]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832] locus:2089055; AT3G17210 Dabb Os01g0516600 protein (Putative stress-responsive protein),Os01g0516200 protein Q8LQD2,A0A0P0V3D4 Q8LQD2_ORYSJ,A0A0P0V3D4_ORYSJ B1108H10.11-1 Os01g0516600 OsJ_01998 OSNPB_010516600,Os01g0516200 OSNPB_010516200 ENOG411DVS9 BHLH110 Q9SFZ3 BH110_ARATH Transcription factor bHLH110 (Basic helix-loop-helix protein 110) (AtbHLH110) (bHLH 110) (Transcription factor EN 59) (bHLH transcription factor bHLH110) 49557 Transcription factor bHLH110 (Basic helix-loop-helix protein 110) (AtbHLH110) (bHLH 110) (Transcription factor EN 59) (bHLH transcription factor bHLH110) nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; transcription from RNA polymerase II promoter [GO:0006366] locus:2199216; AT1G27660 HLH Os01g0105700 protein Q0JRE3 Q0JRE3_ORYSJ Os01g0105700 Os01g0105700 OSNPB_010105700 ENOG411DVS3 CYCD3-1 P42753 CCD31_ARATH Cyclin-D3-1 (Cyclin-delta-3) (Cyclin-d3) (G1/S-specific cyclin-D3-1) (CycD3;1) FUNCTION: Involved in the control of the cell cycle at the G1/S (start) transition. Activates the G1/S phase transition in response to cytokinin hormone signal, but declines in response to sucrose starvation leading to G1 arrest. Involved in the induction of mitotic cell division. Plays an important role in the switch from cell proliferation to the final stages of differentiation during plant development. May not be involved in the activation of cell cycle in the root apical meristem (RAM) in the early phase of seed germination. Promotes divisions in the guard cells (GCs) after the guard mother cells (GMC) symmetric division (PubMed:24687979). {ECO:0000269|PubMed:10066178, ECO:0000269|PubMed:11983922, ECO:0000269|PubMed:12509523, ECO:0000269|PubMed:16227434, ECO:0000269|PubMed:16517759, ECO:0000269|PubMed:24687979}. MISCELLANEOUS: Plants overexpressing CYCD3-1 show extensive leaf curling, disorganized meristems, increased leaf number, late flowering and delayed senescence. CYCD3-1 is a highly unstable protein whose proteolysis is mediated by a proteasome-dependent pathway, and whose levels are highly dependent on the rate of protein synthesis. 42702 Cyclin-D3-1 (Cyclin-delta-3) (Cyclin-d3) (G1/S-specific cyclin-D3-1) (CycD3;1) nucleus [GO:0005634]; cell division [GO:0051301]; G1/S transition of mitotic cell cycle [GO:0000082]; guard mother cell differentiation [GO:0010444]; response to cytokinin [GO:0009735]; response to sucrose [GO:0009744]; seed development [GO:0048316] DEVELOPMENTAL STAGE: Expressed 2 hours before the S phase and remains constant therafter. {ECO:0000269|PubMed:10066178, ECO:0000269|PubMed:8938409}. TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and flowers. Expressed in vegetative shoot meristem and inflorescence. {ECO:0000269|PubMed:10066178, ECO:0000269|PubMed:12509523, ECO:0000269|PubMed:7696881}. locus:2124331; AT4G34160 cyclin d3 NA NA NA NA NA NA NA ENOG411DVS2 PAN Q9SX27 PAN_ARATH Transcription factor PERIANTHIA (bZIP transcription factor 46) (AtbZIP46) DISRUPTION PHENOTYPE: Mutant plants have extra floral organs. The modal numbers of organs in mutant flowers are 5 sepals, 5 petals, 5 stamens, and 2 carpels in contrast with the tetramerous pattern of the wild type. {ECO:0000269|PubMed:8620853, ECO:0000269|PubMed:9990857}. Double mutant displays pentamerous flowers typical of PAN mutants but also displays defects in later stages of petal development. Homeotic floral transformations-E. Meyerowitz-1999 FUNCTION: Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}. 50458 Transcription factor PERIANTHIA (bZIP transcription factor 46) (AtbZIP46) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of flower development [GO:0009909]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}. locus:2026890; AT1G68640 Transcription factor NA NA NA NA NA NA NA ENOG411DVS1 APUM24 Q9LRZ3 PUM24_ARATH Pumilio homolog 24 (APUM-24) (AtPUM24) FUNCTION: Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}. 71604 Pumilio homolog 24 (APUM-24) (AtPUM24) nucleolus [GO:0005730]; mRNA binding [GO:0003729]; regulation of translation [GO:0006417] locus:2086760; AT3G16810 pumilio homolog 24-like Expressed protein (Os03g0831100 protein) Q850Z4 Q850Z4_ORYSJ OSJNBb0027B08.11 LOC_Os03g61560 Os03g0831100 OsJ_13226 OSJNBa0078D06.17 OSNPB_030831100 ENOG411DVS0 SCL26 Q9SUF5 SCL26_ARATH Scarecrow-like protein 26 (AtSCL26) (GRAS family protein 23) (AtGRAS-23) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 53538 Scarecrow-like protein 26 (AtSCL26) (GRAS family protein 23) (AtGRAS-23) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. locus:2132482; AT4G08250 Nodulation-signaling pathway 2 GRAS family transcription factor containing protein (Os03g0263300 protein) Q84Q92 Q84Q92_ORYSJ Os03g0263300 LOC_Os03g15680 OJ1041F02.13 OSNPB_030263300 ENOG411DVS7 O82193,F4ITI0 O82193_ARATH,F4ITI0_ARATH Expressed protein (Nucleotide-diphospho-sugar transferases superfamily protein),AT2G19880.2 (Nucleotide-diphospho-sugar transferases superfamily protein) 58713,58770 Expressed protein (Nucleotide-diphospho-sugar transferases superfamily protein),AT2G19880.2 (Nucleotide-diphospho-sugar transferases superfamily protein) integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; membrane [GO:0016020]; ceramide glucosyltransferase activity [GO:0008120]; glucosylceramide biosynthetic process [GO:0006679] locus:2051975; AT2G19880 Ceramide glucosyltransferase Os01g0906000 protein (Fragment) Q0JGT3 Q0JGT3_ORYSJ Os01g0906000 Os01g0906000 OSNPB_010906000 ENOG411DVS5 Q9LN22 PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial 61208 Pentatricopeptide repeat-containing protein At1g20300, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2012883; AT1G20300 Pentatricopeptide repeat-containing protein Chloroplast RNA processing 1-like protein (Os09g0542800 protein) (cDNA, clone: J065021H02, full insert sequence) Q7XJ09 Q7XJ09_ORYSJ Os09g0542800 Os09g0542800 OsJ_30195 OSNPB_090542800 P0478E02.18 ENOG411DVS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA receptor-like protein kinase At5g15080-like Os09g0361100 protein (Fragment),Os01g0588500 protein (Putative serine/threonine-specific protein kinase NAK) (cDNA clone:J033117E11, full insert sequence),Os05g0591800 protein Q0J2C1,Q8S1E8,A0A0P0WRM0 Q0J2C1_ORYSJ,Q8S1E8_ORYSJ,A0A0P0WRM0_ORYSJ Os09g0361100 Os09g0361100 OSNPB_090361100,Os01g0588500 OSNPB_010588500 P0700A11.27,Os05g0591800 OSNPB_050591800 ENOG411DVSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp -Asn -His and -Tyr). After this exchange a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine resulting in the hypermodified nucleoside queuosine (Q) (7-(((45-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (By similarity) Queuine tRNA-ribosyltransferase catalytic subunit 1 (EC 2.4.2.29) (Guanine insertion enzyme) (tRNA-guanine transglycosylase),Os09g0469900 protein Q6K4A3,A0A0P0XNB1 Q6K4A3_ORYSJ,A0A0P0XNB1_ORYSJ OJ1595_D08.14-1 P0676H02.32-1 Os09g0469900 OSNPB_090469900,Os09g0469900 OSNPB_090469900 FUNCTION: Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product. {ECO:0000256|HAMAP-Rule:MF_03218}.; FUNCTION: Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). {ECO:0000256|RuleBase:RU003777}. ENOG411DVSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA YT521-B-like domain Os04g0608800 protein,Os04g0608800 protein (Fragment) Q0JAA6,A0A0P0WEZ2 Q0JAA6_ORYSJ,A0A0P0WEZ2_ORYSJ Os04g0608800 Os04g0608800 OSNPB_040608800,Os04g0608800 OSNPB_040608800 ENOG411DVSS NCS6 O64862,A0A1P8ASH3,A0A1P8ASI0,F4I2A4,A0A1P8ASH8,A0A1P8ASM8 CTU1_ARATH,A0A1P8ASH3_ARATH,A0A1P8ASI0_ARATH,F4I2A4_ARATH,A0A1P8ASH8_ARATH,A0A1P8ASM8_ARATH Cytoplasmic tRNA 2-thiolation protein 1 (EC 2.7.7.-) (Cytoplasmic tRNA adenylyltransferase 1),2-thiocytidine tRNA biosynthesis protein, TtcA FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. {ECO:0000255|HAMAP-Rule:MF_03053}.,FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. {ECO:0000256|HAMAP-Rule:MF_03053}. PATHWAY: tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis. {ECO:0000255|HAMAP-Rule:MF_03053}.,PATHWAY: tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis. {ECO:0000256|HAMAP-Rule:MF_03053}. 2.7.7.- 40279,27700,41309,37368,31641,23160 Cytoplasmic tRNA 2-thiolation protein 1 (EC 2.7.7.-) (Cytoplasmic tRNA adenylyltransferase 1),2-thiocytidine tRNA biosynthesis protein, TtcA cytoplasm [GO:0005737]; transferase activity [GO:0016740]; tRNA binding [GO:0000049]; tRNA thio-modification [GO:0034227]; tRNA wobble uridine modification [GO:0002098],tRNA binding [GO:0000049]; tRNA thio-modification [GO:0034227]; tRNA wobble uridine modification [GO:0002098],cytoplasm [GO:0005737]; nucleotidyltransferase activity [GO:0016779]; tRNA binding [GO:0000049]; protein urmylation [GO:0032447]; tRNA thio-modification [GO:0034227]; tRNA wobble uridine modification [GO:0002098] locus:2199772; AT2G44270,AT1G76170 Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys) tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position (By similarity) Cytoplasmic tRNA 2-thiolation protein 1 (EC 2.7.7.-) (Cytoplasmic tRNA adenylyltransferase 1),Os01g0598900 protein (Fragment) Q6Z6G6,A0A0P0V4V4 CTU1_ORYSJ,A0A0P0V4V4_ORYSJ NCS6 CTU1 Os02g0762300 LOC_Os02g52470 P0486G03.16,Os01g0598900 OSNPB_010598900 FUNCTION: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. {ECO:0000255|HAMAP-Rule:MF_03053}. ENOG411DVSR IQD32,iqd32 Q9FXI5,A0A1P8AP22 IQD32_ARATH,A0A1P8AP22_ARATH Protein IQ-DOMAIN 32,IQ-domain 32 86882,67113 Protein IQ-DOMAIN 32,IQ-domain 32 chloroplast envelope [GO:0009941]; cytosol [GO:0005829]; microtubule associated complex [GO:0005875]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; response to abscisic acid [GO:0009737] locus:2035428; AT1G19870 IQ-domain Os04g0663100 protein A0A0P0WG85 A0A0P0WG85_ORYSJ Os04g0663100 OSNPB_040663100 ENOG411DVSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Xyloglucan fucosyltransferase NA NA NA NA NA NA NA ENOG411DVSP Q8VZJ5,Q9FNN8,A0A1P8BG69 Q8VZJ5_ARATH,Q9FNN8_ARATH,A0A1P8BG69_ARATH AT5g08500/MAH20_6 (Transmembrane CLPTM1 family protein),Cleft lip and palate associated transmembrane protein-like (Transmembrane CLPTM1 family protein),Transmembrane CLPTM1 family protein 68609,68285,60417 AT5g08500/MAH20_6 (Transmembrane CLPTM1 family protein),Cleft lip and palate associated transmembrane protein-like (Transmembrane CLPTM1 family protein),Transmembrane CLPTM1 family protein endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020],integral component of membrane [GO:0016021] locus:504954879;,locus:2159592; AT5G23575,AT5G08500 Cleft lip and palate transmembrane protein OSJNBa0064D20.9 protein (Os04g0441900 protein) (cDNA clone:J023064G12, full insert sequence),Os04g0441900 protein (Fragment) Q7FA04,Q0JCZ5,A0A0N7KJ40 Q7FA04_ORYSJ,Q0JCZ5_ORYSJ,A0A0N7KJ40_ORYSJ OSJNBa0064D20.9 Os04g0441900 OsJ_14919 OSNPB_040441900,Os04g0441900 Os04g0441900 OSNPB_040441900,Os04g0441900 OSNPB_040441900 ENOG411DVSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 family protein, expressed (Os10g0378100 protein) (cDNA clone:J023042H12, full insert sequence),Os10g0378000 protein Q338Z0,A0A0P0XTH1 Q338Z0_ORYSJ,A0A0P0XTH1_ORYSJ Os10g0378100 LOC_Os10g23180 OsJ_31314 OSNPB_100378100,Os10g0378000 OSNPB_100378000 ENOG411DVSU FUT7 Q9XI81 FUT7_ARATH Probable fucosyltransferase 7 (AtFUT7) (EC 2.4.1.-) FUNCTION: May be involved in cell wall biosynthesis. May act as a fucosyltransferase. PATHWAY: Protein modification; protein glycosylation. ARA:AT1G14070-MONOMER; 2.4.1.- 60538 Probable fucosyltransferase 7 (AtFUT7) (EC 2.4.1.-) Golgi apparatus [GO:0005794]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; fucosyltransferase activity [GO:0008417]; galactoside 2-alpha-L-fucosyltransferase activity [GO:0008107]; cell wall organization [GO:0071555]; plant-type cell wall biogenesis [GO:0009832]; protein glycosylation [GO:0006486]; xyloglucan biosynthetic process [GO:0009969] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and seedlings. {ECO:0000269|PubMed:11743104}. AT1G14070 fucosyltransferase Os02g0763900 protein (Putative galactoside 2-alpha-L-fucosyltransferase) (Putative galactoside 2-alpha-L-fucosyltransferase / xyloglucan alpha-(1,2)-fucosyltransferase) Q6Z6F4 Q6Z6F4_ORYSJ Os02g0763900 Os02g0763900 OSNPB_020763900 P0486G03.36 P0539D10.12 ENOG411DVST CYP97B3 O23365 C97B3_ARATH Cytochrome P450 97B3, chloroplastic (EC 1.14.-.-) FUNCTION: Heme-containing cytochrome P450 probably involved in the biosynthesis of xanthophylls. Hydroxylates beta-rings of alpha-carotene. May also have activity on beta-rings of beta-carotene. {ECO:0000269|PubMed:19939422}. ARA:AT4G15110-MONOMER; 1.14.-.- 65175 Cytochrome P450 97B3, chloroplastic (EC 1.14.-.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; carotenoid biosynthetic process [GO:0016117] locus:2129695; AT4G15110 cytochrome P450 Os02g0173100 protein (Putative cytochrome P450),Os02g0173100 protein (Fragment) Q6H516,Q0E3I8,A0A0P0VFN8,A0A0N7KES3 Q6H516_ORYSJ,Q0E3I8_ORYSJ,A0A0P0VFN8_ORYSJ,A0A0N7KES3_ORYSJ OSJNBa0073A21.8-1 Os02g0173100 OSNPB_020173100,Os02g0173100 Os02g0173100 OSNPB_020173100,Os02g0173100 OSNPB_020173100 ENOG411DVSK NFYA3,NF-YA3 Q93ZH2,F4IEZ4,F4IEZ6 NFYA3_ARATH,F4IEZ4_ARATH,F4IEZ6_ARATH Nuclear transcription factor Y subunit A-3 (AtNF-YA-3) (Transcriptional activator HAP2C),Nuclear factor Y, subunit A3 FUNCTION: Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. 37618,34955,37717 Nuclear transcription factor Y subunit A-3 (AtNF-YA-3) (Transcriptional activator HAP2C),Nuclear factor Y, subunit A3 CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],transcription factor activity, sequence-specific DNA binding [GO:0003700],CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. locus:2032758; AT1G72830 Nuclear transcription factor Y subunit CCAAT-binding transcription factor subunit B family protein, expressed (HAP2 subunit of HAP complex) (Os03g0174900 protein) (cDNA clone:J023014B08, full insert sequence) Q10R12 Q10R12_ORYSJ OsHAP2C Os03g0174900 LOC_Os03g07880 OSNPB_030174900 ENOG411DVSJ ABCG7 Q9ZU35,A0A1P8B1X3,A0NAA8,A0A1P8B1W8 AB7G_ARATH,A0A1P8B1X3_ARATH,A0NAA8_ARATH,A0A1P8B1W8_ARATH ABC transporter G family member 7 (ABC transporter ABCG.7) (AtABCG7) (White-brown complex homolog protein 7) (AtWBC7),ABC-2 type transporter family protein,ABC-2 type transporter family protein (AT2G01320 protein) 78899,56271,79100,69992 ABC transporter G family member 7 (ABC transporter ABCG.7) (AtABCG7) (White-brown complex homolog protein 7) (AtWBC7),ABC-2 type transporter family protein,ABC-2 type transporter family protein (AT2G01320 protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] locus:2038746; AT2G01320 ABC transporter G family member Os01g0121700 protein (Putative ATP-binding-cassette protein) (cDNA clone:J013012G06, full insert sequence),Os02g0581700 protein Q9ARU4,B9F0R8 Q9ARU4_ORYSJ,B9F0R8_ORYSJ Os01g0121700 Os01g0121700 OsJ_00183 OSNPB_010121700 P0445D12.4,Os02g0581700 OsJ_07280 OSNPB_020581700 ENOG411DVSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain NA NA NA NA NA NA NA ENOG411DVSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Bromodomain Os03g0130800 protein (Fragment) Q0DVG7 Q0DVG7_ORYSJ Os03g0130800 Os03g0130800 OSNPB_030130800 ENOG411DVSN VIP5 Q9C950 VIP5_ARATH Protein RTF1 homolog (Protein VERNALIZATION INDEPENDENCE 5) DISRUPTION PHENOTYPE: Early flowering, reduced plant size and defects in floral morphology in whorls 1-3, but fully fertile flowers (PubMed:12750345). Reduced seed dormancy and increased germination rate of freshly harvested seeds (PubMed:21799800). {ECO:0000269|PubMed:12750345, ECO:0000269|PubMed:21799800}. Defective in maintenance of FLC activity in nonvernalized plants. Undetectable FLC mRNA expression. Early flowering under short day photoperiods. FUNCTION: Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3) (PubMed:20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressors and FLC and MADS-box genes of the MAF family (PubMed:15472079). Involved in the control of seed dormancy and germination (PubMed:21799800). {ECO:0000269|PubMed:15472079, ECO:0000269|PubMed:20363855, ECO:0000269|PubMed:21799800}. 71320 Protein RTF1 homolog (Protein VERNALIZATION INDEPENDENCE 5) Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II C-terminal domain phosphoserine binding [GO:1990269]; transcription factor activity, RNA polymerase II transcription factor binding [GO:0001076]; flower development [GO:0009908]; histone modification [GO:0016570]; negative regulation of flower development [GO:0009910]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription elongation from RNA polymerase II promoter [GO:0006368] locus:2205996; AT1G61040 RNA polymerase-associated protein RTF1 Os12g0535900 protein (Fragment) Q0IMW0,A0A0P0YBA7 Q0IMW0_ORYSJ,A0A0P0YBA7_ORYSJ Os12g0535900 Os12g0535900 OSNPB_120535900,Os12g0535900 OSNPB_120535900 ENOG411DVSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os12g0102900 protein,Os11g0103400 protein (Fragment) A0A0P0Y5Y4,A0A0P0XYT4 A0A0P0Y5Y4_ORYSJ,A0A0P0XYT4_ORYSJ Os12g0102900 OSNPB_120102900,Os11g0103400 OSNPB_110103400 ENOG411DVSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0642650 protein Q67WV8 Q67WV8_ORYSJ Os06g0642650 OsJ_22122 OSNPB_060642650 P0416A11.15 ENOG411DVSB GLTP1 O22797 GLTP1_ARATH Glycolipid transfer protein 1 FUNCTION: May be involved in glycolipids transfer. {ECO:0000305|PubMed:16309699}. R-ATH-1660662; 22740 Glycolipid transfer protein 1 cytosol [GO:0005829]; plasma membrane [GO:0005886]; intermembrane lipid transfer activity [GO:0120013] locus:2051043; AT2G33470 glycolipid transfer protein Glycolipid transfer protein-like (Os02g0622400 protein) Q6K1Q5 Q6K1Q5_ORYSJ Os02g0622400 Os02g0622400 OJ1234_B11.30 OsJ_07574 OSJNOa283G08.2 OSNPB_020622400 ENOG411DVSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0502500 protein (cDNA clone:J023005P11, full insert sequence) (cDNA clone:J023078O21, full insert sequence) Q6K6D3 Q6K6D3_ORYSJ Os02g0502500 OJ1126_B06.3 OsJ_06830 OSNPB_020502500 P0654A08.34 ENOG411DVSG PRS2,PRS1,PRS5 Q42583,Q42581,O64888,A0A1P8ATQ0,A8MQM3,F4IJW3 KPRS2_ARATH,KPRS1_ARATH,KPRS5_ARATH,A0A1P8ATQ0_ARATH,A8MQM3_ARATH,F4IJW3_ARATH Ribose-phosphate pyrophosphokinase 2, chloroplastic (EC 2.7.6.1) (PRS II) (Phosphoribosyl pyrophosphate synthase 2),Ribose-phosphate pyrophosphokinase 1, chloroplastic (EC 2.7.6.1) (PRS I) (Phosphoribosyl pyrophosphate synthase 1),Ribose-phosphate pyrophosphokinase 5, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 5),Phosphoribosyl pyrophosphate (PRPP) synthase 2,Phosphoribosyltransferase family protein,Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) ARA:AT1G32380-MONOMER;,ARA:AT2G35390-MONOMER;,ARA:AT2G44530-MONOMER; R-ATH-73843; 2.7.6.1 43333,43695,42625,31585,42497,37319 Ribose-phosphate pyrophosphokinase 2, chloroplastic (EC 2.7.6.1) (PRS II) (Phosphoribosyl pyrophosphate synthase 2),Ribose-phosphate pyrophosphokinase 1, chloroplastic (EC 2.7.6.1) (PRS I) (Phosphoribosyl pyrophosphate synthase 1),Ribose-phosphate pyrophosphokinase 5, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 5),Phosphoribosyl pyrophosphate (PRPP) synthase 2,Phosphoribosyltransferase family protein,Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) chloroplast [GO:0009507]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; ribonucleoside monophosphate biosynthetic process [GO:0009156],chloroplast [GO:0009507]; plastid [GO:0009536]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; ribonucleoside monophosphate biosynthetic process [GO:0009156],magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; ribonucleoside monophosphate biosynthetic process [GO:0009156],magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]; transferase activity, transferring glycosyl groups [GO:0016757]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; ribonucleoside monophosphate biosynthetic process [GO:0009156],kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]; transferase activity, transferring glycosyl groups [GO:0016757]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; ribonucleoside monophosphate biosynthetic process [GO:0009156] locus:2033792;,locus:2062405;,locus:2042351; AT1G32380,AT2G35390,AT2G44530 ribose-phosphate pyrophosphokinase Ribose-phosphate pyrophosphokinase 1, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 1),Os02g0127700 protein Q6Z2L5,A0A0P0VEH6 KPRS1_ORYSJ,A0A0P0VEH6_ORYSJ Os02g0127700 LOC_Os02g03540 P0482F12.28-1 P0482F12.28-2 P0576F08.1-1 P0576F08.1-2,Os02g0127700 OSNPB_020127700 ENOG411DVSF O48813,A0A1P8B1S8 O48813_ARATH,A0A1P8B1S8_ARATH At2g39650 (Cruciferin (DUF506)) (Uncharacterized protein At2g39650),Cruciferin (DUF506) 32536,26115 At2g39650 (Cruciferin (DUF506)) (Uncharacterized protein At2g39650),Cruciferin (DUF506) locus:2039757; AT2G39650 Plant-specific domain TIGR01615 family protein Os01g0973600 protein Q5JL24 Q5JL24_ORYSJ Os01g0973600 Os01g0973600 OSNPB_010973600 P0459B04.1 P0698H10.25 ENOG411DVSE Q9LMS7,Q8L835 Q9LMS7_ARATH,Q8L835_ARATH T10F20.8 protein (Translation elongation factor EF1A/initiation factor IF2gamma family protein),At1g18070 (Putative guanine nucleotide regulatory protein) (Translation elongation factor EF1A/initiation factor IF2gamma family protein) ARA:GQT-2071-MONOMER; R-ATH-72764;R-ATH-975956;R-ATH-975957; 60507,59243 T10F20.8 protein (Translation elongation factor EF1A/initiation factor IF2gamma family protein),At1g18070 (Putative guanine nucleotide regulatory protein) (Translation elongation factor EF1A/initiation factor IF2gamma family protein) cytosol [GO:0005829]; translation release factor complex [GO:0018444]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743]; translation release factor activity [GO:0003747]; cytoplasmic translational termination [GO:0002184],GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746]; translation initiation factor activity [GO:0003743]; translation release factor activity [GO:0003747]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288] locus:2194115; AT1G18070 eukaryotic peptide chain release factor GTP-binding subunit Os04g0270100 protein (Fragment),Os02g0456500 protein Q0JEI2,A0A0P0W8Q9,A0A0N7KIR1,A0A0P0VIM8 Q0JEI2_ORYSJ,A0A0P0W8Q9_ORYSJ,A0A0N7KIR1_ORYSJ,A0A0P0VIM8_ORYSJ Os04g0270100 Os04g0270100 OSNPB_040270100,Os04g0270100 OSNPB_040270100,Os02g0456500 OSNPB_020456500 ENOG411DVSD CDC45 Q9LSG6 Q9LSG6_ARATH CDC45 (Cell division cycle 45)-like protein (Cell division cycle 45) (Putative cell division cyle protein 45) Partial to complete sterility due to defects in meiosis-C. Bergounioux-2004 R-ATH-68962; 67551 CDC45 (Cell division cycle 45)-like protein (Cell division cycle 45) (Putative cell division cyle protein 45) DNA replication preinitiation complex [GO:0031261]; nuclear pre-replicative complex [GO:0005656]; replication fork protection complex [GO:0031298]; 3'-5' DNA helicase activity [GO:0043138]; chromatin binding [GO:0003682]; DNA replication origin binding [GO:0003688]; single-stranded DNA binding [GO:0003697]; cell division [GO:0051301]; DNA replication initiation [GO:0006270]; double-strand break repair via break-induced replication [GO:0000727]; gametophyte development [GO:0048229]; mitotic DNA replication preinitiation complex assembly [GO:1902977]; positive regulation of G1/S transition of mitotic cell cycle [GO:1900087]; pre-replicative complex assembly involved in nuclear cell cycle DNA replication [GO:0006267]; premeiotic DNA replication [GO:0006279]; regulation of chromatin silencing at telomere [GO:0031938] locus:2090270; AT3G25100 Cell division control protein 45 CDC45-like protein, expressed (Os11g0128400 protein) (cDNA clone:J033089K18, full insert sequence),CDC45-like protein, expressed (Os12g0124700 protein) Q2RB27,Q2QYC3 Q2RB27_ORYSJ,Q2QYC3_ORYSJ Os11g0128400 LOC_Os11g03430 Os11g0128400 OSNPB_110128400,Os12g0124700 LOC_Os12g03130 Os12g0124700 OsJ_35066 OSNPB_120124700 ENOG411E5D7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E5D5 RPL29 Q9FJP3 RK29_ARATH 50S ribosomal protein L29, chloroplastic (CL29) 19377 50S ribosomal protein L29, chloroplastic (CL29) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; nucleoid [GO:0009295]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2171835; AT5G65220 50S ribosomal protein L29 Os02g0754300 protein (Putative ribosomal protein L29) (cDNA clone:J013098F16, full insert sequence) (cDNA clone:J013153I07, full insert sequence) Q6Z6A0 Q6Z6A0_ORYSJ Os02g0754300 OSNPB_020754300 P0627E03.11 ENOG411E2U9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os05g0283200 protein (cDNA clone:J023002D08, full insert sequence) Q0DJG7 Q0DJG7_ORYSJ Os05g0283200 Os05g0283200 OsJ_17906 OSNPB_050283200 ENOG411EHU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHU1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcriptional factor B3 family protein NA NA NA NA NA NA NA ENOG411EHU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os12g0606300 protein (RNA recognition motif family protein) Q2QMF6 Q2QMF6_ORYSJ Os12g0606300 LOC_Os12g41310 OsJ_36799 OSNPB_120606300 ENOG411EHU3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0392650 protein,Os07g0614850 protein A0A0P0XU94,A0A0P0X8T4 A0A0P0XU94_ORYSJ,A0A0P0X8T4_ORYSJ Os10g0392650 OSNPB_100392650,Os07g0614850 OSNPB_070614850 ENOG411DUZI Q8RXT8,A0A1I9LQY0 Q8RXT8_ARATH,A0A1I9LQY0_ARATH S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g60910),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 28754,21591 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (Uncharacterized protein At3g60910),S-adenosyl-L-methionine-dependent methyltransferases superfamily protein methyltransferase activity [GO:0008168] locus:2101861; AT3G60910 Methyltransferase-like protein Os07g0656800 protein (cDNA clone:J013032A06, full insert sequence) Q0D402 Q0D402_ORYSJ Os07g0656800 Os07g0656800 OSNPB_070656800 ENOG411E2XC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transcription factor OSJNBa0039C07.10 protein (Os04g0398000 protein) (cDNA clone:J033044C14, full insert sequence) Q7XLG6 Q7XLG6_ORYSJ Os04g0398000 Os04g0398000 OSJNBa0039C07.10 OSNPB_040398000 ENOG411DUZN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZIP Zinc transporter Os08g0100200 protein A0A0P0XB79 A0A0P0XB79_ORYSJ Os08g0100200 OSNPB_080100200 ENOG411DUZM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mediator of RNA polymerase II transcription subunit Mediator of RNA polymerase II transcription subunit 10 (Mediator complex subunit 10) Q0J064 Q0J064_ORYSJ Os09g0528300 MED10 Os09g0528300 OsJ_30088 OSNPB_090528300 FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000256|RuleBase:RU364146}. ENOG411DUZE AFC3,AFC1,AFC2,FC2,FC1,AME3 P51568,P51566,P51567,F4JR16,A0A1P8B6P6,F4JAH3,A0A1P8B6Q5,A0A1P8ATC3,A0A1P8B6Q2,A0A1P8B3H4,A0A1P8B6P5,A0A1P8B6Q0,F4JV38,F4JV37 AFC3_ARATH,AFC1_ARATH,AFC2_ARATH,F4JR16_ARATH,A0A1P8B6P6_ARATH,F4JAH3_ARATH,A0A1P8B6Q5_ARATH,A0A1P8ATC3_ARATH,A0A1P8B6Q2_ARATH,A0A1P8B3H4_ARATH,A0A1P8B6P5_ARATH,A0A1P8B6Q0_ARATH,F4JV38_ARATH,F4JV37_ARATH Serine/threonine-protein kinase AFC3 (EC 2.7.12.1),Serine/threonine-protein kinase AFC1 (EC 2.7.12.1),Serine/threonine-protein kinase AFC2 (EC 2.7.12.1),LAMMER-type protein kinase AFC2,Serine/threonine-protein kinase AFC1,Serine/Threonine-kinase,Protein kinase superfamily protein FUNCTION: Activator of yeast transcription factor, STE12. 2.7.12.1; 2.7.12.1 46224,54198,49566,37931,25630,52674,36777,6200,40310,33245,28675,45016,45374,41226 Serine/threonine-protein kinase AFC3 (EC 2.7.12.1),Serine/threonine-protein kinase AFC1 (EC 2.7.12.1),Serine/threonine-protein kinase AFC2 (EC 2.7.12.1),LAMMER-type protein kinase AFC2,Serine/threonine-protein kinase AFC1,Serine/Threonine-kinase,Protein kinase superfamily protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; regulation of transcription, DNA-templated [GO:0006355],ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; mRNA processing [GO:0006397]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],kinase activity [GO:0016301] locus:2125622;,locus:2084006;,locus:2121984; AT4G32660,AT3G53570,AT4G24740 Serine threonine-protein kinase Os01g0590900 protein (cDNA clone:J013054D23, full insert sequence),Os01g0837900 protein,Os12g0460800 protein (Fragment),Os12g0460800 protein Q5ZD29,Q0JHX2,A0A0P0Y9T6,A0A0P0YA82 Q5ZD29_ORYSJ,Q0JHX2_ORYSJ,A0A0P0Y9T6_ORYSJ,A0A0P0YA82_ORYSJ Os01g0590900 OsJ_02427 OSNPB_010590900 P0710A02.4,Os01g0837900 Os01g0837900 OsJ_04009 OSNPB_010837900,Os12g0460800 OSNPB_120460800 ENOG411DUZ1 RIN2,RIN3 Q8VYC8,Q8W4Q5,F4KD92 RIN2_ARATH,RIN3_ARATH,F4KD92_ARATH E3 ubiquitin protein ligase RIN2 (EC 2.3.2.27) (AMF receptor-like protein 1A) (RING-type E3 ubiquitin transferase RIN2) (RPM1-interacting protein 2),E3 ubiquitin protein ligase RIN3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase RIN3) (RPM1-interacting protein 3),RPM1 interacting protein 3 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16212605}. Decreased ion leakage in response to Pseudomonas syringae-J. Dangl-2005 FUNCTION: E3 ubiquitin protein ligase that acts as positive regulator of RPM1- and RPS2-dependent hypersensitive response (HR), in association with RIN3. Probably not required for RPM1 degradation during HR. {ECO:0000269|PubMed:16212605}.,FUNCTION: E3 ubiquitin protein ligase that acts as positive regulator of RPM1- and RPS2-dependent hypersensitive response (HR), in association with RIN2. Probably not required for RPM1 degradation during HR. {ECO:0000269|PubMed:16212605}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-532668;R-ATH-901032; 2.3.2.27 64564,64518,66566 E3 ubiquitin protein ligase RIN2 (EC 2.3.2.27) (AMF receptor-like protein 1A) (RING-type E3 ubiquitin transferase RIN2) (RPM1-interacting protein 2),E3 ubiquitin protein ligase RIN3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase RIN3) (RPM1-interacting protein 3),RPM1 interacting protein 3 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; plant-type hypersensitive response [GO:0009626]; positive regulation of plant-type hypersensitive response [GO:0034052]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; plant-type hypersensitive response [GO:0009626]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],integral component of membrane [GO:0016021]; ubiquitin-protein transferase activity [GO:0004842]; positive regulation of plant-type hypersensitive response [GO:0034052] locus:2122674;,locus:2163680; AT4G25230,AT5G51450 E3 ubiquitin protein ligase Os07g0484300 protein (Putative zinc finger (C3HC4-type RING finger) protein) (Zinc finger C3H4 type protein) (cDNA clone:J023134P18, full insert sequence),Os07g0484300 protein (Fragment) Q69PX0,A0A0N7KNF9 Q69PX0_ORYSJ,A0A0N7KNF9_ORYSJ OJ1136_F08.121 Os07g0484300 OSNPB_070484300,Os07g0484300 OSNPB_070484300 ENOG411DUZ4 APF1 Q8VYV9 APF1_ARATH Aspartyl protease family protein 1 (EC 3.4.23.-) FUNCTION: Aspartyl protease. Not able to cleave BAG6. {ECO:0000269|PubMed:26739014}. 3.4.23.- 56028 Aspartyl protease family protein 1 (EC 3.4.23.-) anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2827921; AT2G17760 Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411EHUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUV MZA15.15 Q7Y218,B3H4R1 Q7Y218_ARATH,B3H4R1_ARATH Glycine-rich protein (Uncharacterized protein At5g46730),Glycine-rich protein 22967,19790 Glycine-rich protein (Uncharacterized protein At5g46730),Glycine-rich protein locus:2178520; AT5G46730 NA NA NA NA NA NA NA NA ENOG411EHUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Retrotransposon protein Os04g0318600 protein,Os10g0117533 protein A3ASE5,A0A0P0XS05 A3ASE5_ORYSJ,A0A0P0XS05_ORYSJ Os04g0318600 OsJ_14284 OSNPB_040318600,Os10g0117533 OSNPB_100117533 ENOG411E6QA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cAMP-regulated phosphoprotein/endosulfine conserved region Negatively light-regulated protein, putative, expressed (Os12g0433700 protein) (cDNA, clone: J065208F07, full insert sequence),Negatively light-regulated protein, putative, expressed (Os03g0304800 protein) (cDNA clone:001-105-E12, full insert sequence) Q2QSC6,Q10ML2 Q2QSC6_ORYSJ,Q10ML2_ORYSJ Os12g0433700 LOC_Os12g24580 Os12g0433700 OsJ_35945 OSNPB_120433700,Os03g0304800 LOC_Os03g19220 Os03g0304800 OSNPB_030304800 ENOG411E6QF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Di19 Protein DEHYDRATION-INDUCED 19 homolog 6 (OsDi19-6),Os05g0107900 protein (Fragment) Q7XBA5,A0A0P0WH15 DI196_ORYSJ,A0A0P0WH15_ORYSJ DI19-6 DI1 Os05g0107900 LOC_Os05g01730 OsJ_016081 OSJNBa0068N01.9,Os05g0107900 OSNPB_050107900 ENOG411E6QE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3245) NA NA NA NA NA NA NA ENOG411E6QJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chloroplast outer envelope 24 kD protein Os01g0969000 protein (cDNA clone:J033126A10, full insert sequence) Q8S9Z3 Q8S9Z3_ORYSJ Os01g0969000 Os01g0969000 OJ1656_A11.19 OsJ_04911 OSNPB_010969000 ENOG411E6QH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0346600 protein A0A0N7KCX1 A0A0N7KCX1_ORYSJ Os01g0346600 OSNPB_010346600 ENOG411E6QI T27B3.20 Q84VW7,Q9M2N7 Q84VW7_ARATH,Q9M2N7_ARATH At1g21930 (Transmembrane protein) (Uncharacterized protein At1g21930),At3g42150 (Transmembrane protein) (Uncharacterized protein At3g42150) (Uncharacterized protein T27B3.20) 10570,10727 At1g21930 (Transmembrane protein) (Uncharacterized protein At1g21930),At3g42150 (Transmembrane protein) (Uncharacterized protein At3g42150) (Uncharacterized protein T27B3.20) integral component of membrane [GO:0016021] locus:2201123;,locus:2100799; AT1G21930,AT3G42150 NA Expressed protein (Os12g0481200 protein) (cDNA clone:J033080C14, full insert sequence) Q2QQW1 Q2QQW1_ORYSJ LOC_Os12g29670 Os12g0481200 OsJ_36092 OSNPB_120481200 ENOG411E6QR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0807000 protein Q84M53 Q84M53_ORYSJ Os03g0807000 Os03g0807000 OSJNBa0059E14.16 OSNPB_030807000 ENOG411E6QV SPL3 P93015 SPL3_ARATH Squamosa promoter-binding-like protein 3 DISRUPTION PHENOTYPE: Plants flower early and have a significantly reduced number of juvenile, adult and cauline leaves, with a shorter petiole and a more acute leaf base in the first two leaves. {ECO:0000269|PubMed:16914499}. FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape. {ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:16914499, ECO:0000269|PubMed:9301089}. 15304 Squamosa promoter-binding-like protein 3 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; inflorescence development [GO:0010229]; positive regulation of flower development [GO:0009911]; regulation of vegetative phase change [GO:0010321]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Increases during floral transition and stay high thereafter. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523, ECO:0000269|PubMed:16914499, ECO:0000269|PubMed:9301089}. TISSUE SPECIFICITY: Expressed in vegetative and inflorescence apical meristems, floral meristems, leaf and flower organ primordia, inflorescence stem tissue and to lower extent in roots. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:9301089}. locus:2057656; AT2G33810 squamosa promoter-binding protein 1-like NA NA NA NA NA NA NA ENOG411E6QW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - Protease inhibitor seed storage LTP family protein precursor expressed Cortical cell delineating protein, putative, expressed (Os10g0552700 protein) (Putative lipid transfer protein) (cDNA clone:001-111-A12, full insert sequence),Cortical cell delineating protein, putative, expressed (Os10g0552600 protein) (Putative lipid transfer protein),Cortical cell delineating protein, putative, expressed (Os10g0552800 protein) (Putative lipid transfer protein) (cDNA clone:001-102-B09, full insert sequence),Os08g0488100 protein (Fragment),Os01g0733100 protein Q9FWP8,Q9FWP7,Q9FWP9,A0A0P0XHG4,A0A0P0V7T6 Q9FWP8_ORYSJ,Q9FWP7_ORYSJ,Q9FWP9_ORYSJ,A0A0P0XHG4_ORYSJ,A0A0P0V7T6_ORYSJ OSJNBa0015J15.7 LOC_Os10g40520 Os10g0552700 OsJ_32400 OSNPB_100552700,OSJNBa0015J15.8 LOC_Os10g40510 Os10g0552600 OSNPB_100552600,OSJNBa0015J15.6 LOC_Os10g40530 Os10g0552800 OsJ_32401 OSNPB_100552800,Os08g0488100 OSNPB_080488100,Os01g0733100 OSNPB_010733100 ENOG411E6QT ATL33 O80927 ATL33_ARATH RING-H2 finger protein ATL33 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL33) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 25204 RING-H2 finger protein ATL33 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL33) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2040736; AT2G37580 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E6QU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0570800 protein (Fragment) A0A0N7KS90 A0A0N7KS90_ORYSJ Os10g0570800 OSNPB_100570800 ENOG411E6QY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rare lipoprotein A (RlpA)-like double-psi beta-barrel NA NA NA NA NA NA NA ENOG411E6Q2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411E6Q3 rps14 P56804 RR14_ARATH 30S ribosomal protein S14, chloroplastic FUNCTION: Binds 16S rRNA, required for the assembly of 30S particles. {ECO:0000255|HAMAP-Rule:MF_00537}. 11785 30S ribosomal protein S14, chloroplastic chloroplast [GO:0009507]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] ATCG00330 Binds 16S rRNA required for the assembly of 30S particles (By similarity) 30S ribosomal protein S14, chloroplastic P0C467 RR14_ORYSJ rps14 Nip048 FUNCTION: Binds 16S rRNA, required for the assembly of 30S particles. {ECO:0000255|HAMAP-Rule:MF_00537}. ENOG411E6Q6 F4JQU9 F4JQU9_ARATH Small nuclear ribonucleoprotein family protein 12652 Small nuclear ribonucleoprotein family protein intracellular ribonucleoprotein complex [GO:0030529]; NatC complex [GO:0031417]; viral nucleocapsid [GO:0019013] locus:504955489; AT4G18372 LSM domain Os06g0677600 protein (Small nuclear ribonucleoprotein-like) (cDNA clone:001-112-H05, full insert sequence) Q653U6 Q653U6_ORYSJ Os06g0677600 Os06g0677600 B1153E06.22 OsJ_22356 OSNPB_060677600 P0710B08.16 ENOG411E6Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain Os03g0847900 protein (cDNA clone:006-306-C09, full insert sequence) (p21-Rho-binding domain containing protein, expressed),Os03g0847900 protein,Os03g0847900 protein (Fragment) Q84JT2,A0A0N7KIE0,A0A0P0W609 Q84JT2_ORYSJ,A0A0N7KIE0_ORYSJ,A0A0P0W609_ORYSJ Os03g0847900 LOC_Os03g63060 OsJ_13360 OSJNBb0043P23.4 OSJNBb0096M04.140 OSNPB_030847900,Os03g0847900 OSNPB_030847900 ENOG411E6Q4 Q6NMJ2,Q680L9,A0A1P8B4L6 OLE96_ARATH,Q680L9_ARATH,A0A1P8B4L6_ARATH Pollen-specific protein-like At4g18596,At5g45880 (Ole e I (Main olive allergen)-like protein) (Pollen Ole e 1 allergen and extensin family protein),Pollen Ole e 1 allergen and extensin family protein 18680,18842,24116 Pollen-specific protein-like At4g18596,At5g45880 (Ole e I (Main olive allergen)-like protein) (Pollen Ole e 1 allergen and extensin family protein),Pollen Ole e 1 allergen and extensin family protein extracellular space [GO:0005615],extracellular space [GO:0005615]; integral component of membrane [GO:0016021] locus:505006496;,locus:2152440; AT4G18596,AT5G45880 pollen Ole e 1 allergen and extensin family protein NA NA NA NA NA NA NA ENOG411E6Q5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Expressed protein (Os03g0183500 protein) (cDNA clone:001-110-D07, full insert sequence) Q10QU0 Q10QU0_ORYSJ Os03g0183500 LOC_Os03g08520 Os03g0183500 OsJ_09676 OSJNBa0032G08.10 OSNPB_030183500 ENOG411E6Q8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein NA NA NA NA NA NA NA ENOG411E6Q9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dof domain zinc finger NA NA NA NA NA NA NA ENOG411ECUG BGLU32,BGLU31 Q9FLU8,Q9FLU9,A0A1P8BER6 BGL32_ARATH,BGL31_ARATH,A0A1P8BER6_ARATH Beta-glucosidase 32 (AtBGLU32) (EC 3.2.1.21),Beta-glucosidase 31 (AtBGLU31) (EC 3.2.1.21),Beta glucosidase 31 ARA:AT5G24550-MONOMER;,ARA:AT5G24540-MONOMER; R-ATH-189085; 3.2.1.21 61684,61872,52278 Beta-glucosidase 32 (AtBGLU32) (EC 3.2.1.21),Beta-glucosidase 31 (AtBGLU31) (EC 3.2.1.21),Beta glucosidase 31 beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657]; response to other organism [GO:0051707],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2153944;,locus:2153934; AT5G24550,AT5G24540 beta glucosidase NA NA NA NA NA NA NA ENOG411ECUF GLO5,GLO1,GLO2,GOX3,GOX1,GOX2 O49506,Q9LRR9,Q9LRS0,A0A1P8B993,A8MS37,F4JFV6,Q2V3V9,B3H4B8 GLO5_ARATH,GLO1_ARATH,GLO2_ARATH,A0A1P8B993_ARATH,A8MS37_ARATH,F4JFV6_ARATH,Q2V3V9_ARATH,B3H4B8_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 (EC 1.1.3.15) (Glycolate oxidase 3) (AtGLO5) (GOX 3) (Short chain alpha-hydroxy acid oxidase GLO5),Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 (EC 1.1.3.15) (Glycolate oxidase 1) (AtGLO1) (GOX 1) (Short chain alpha-hydroxy acid oxidase GLO1),Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 (EC 1.1.3.15) (Glycolate oxidase 1) (AtGLO2) (GOX 1) (Short chain alpha-hydroxy acid oxidase GLO2),Aldolase-type TIM barrel family protein PATHWAY: Photosynthesis; photorespiration; glycine from 2-phosphoglycolate: step 2/3. ARA:AT4G18360-MONOMER;,ARA:AT3G14420-MONOMER;MetaCyc:AT3G14420-MONOMER;,ARA:AT3G14415-MONOMER; R-ATH-389661;R-ATH-390918; 1.1.3.15 40482,40341,40307,28979,39463,40934,40300,40317 Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 (EC 1.1.3.15) (Glycolate oxidase 3) (AtGLO5) (GOX 3) (Short chain alpha-hydroxy acid oxidase GLO5),Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 (EC 1.1.3.15) (Glycolate oxidase 1) (AtGLO1) (GOX 1) (Short chain alpha-hydroxy acid oxidase GLO1),Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 (EC 1.1.3.15) (Glycolate oxidase 1) (AtGLO2) (GOX 1) (Short chain alpha-hydroxy acid oxidase GLO2),Aldolase-type TIM barrel family protein peroxisome [GO:0005777]; FMN binding [GO:0010181]; long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity [GO:0052853]; medium-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052854]; very-long-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052852]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium [GO:0042742]; hydrogen peroxide biosynthetic process [GO:0050665]; oxidative photosynthetic carbon pathway [GO:0009854],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; FMN binding [GO:0010181]; glycolate oxidase activity [GO:0008891]; long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity [GO:0052853]; medium-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052854]; very-long-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052852]; defense response to bacterium [GO:0042742]; hydrogen peroxide biosynthetic process [GO:0050665]; oxidative photosynthetic carbon pathway [GO:0009854]; response to cytokinin [GO:0009735],peroxisome [GO:0005777]; FMN binding [GO:0010181]; long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity [GO:0052853]; medium-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052854]; very-long-chain-(S)-2-hydroxy-acid oxidase activity [GO:0052852]; oxidative photosynthetic carbon pathway [GO:0009854],FMN binding [GO:0010181]; oxidoreductase activity [GO:0016491],apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; nucleus [GO:0005634]; peroxisome [GO:0005777]; vacuole [GO:0005773]; FMN binding [GO:0010181]; oxidoreductase activity [GO:0016491]; defense response to bacterium [GO:0042742]; hydrogen peroxide biosynthetic process [GO:0050665] locus:2124499;,locus:2091642;,locus:2091020; AT4G18360,AT3G14420,AT3G14415 Short chain alpha-hydroxy acid oxidase Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 (EC 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (OsGLO1) (Short chain alpha-hydroxy acid oxidase GLO1),Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 (EC 1.1.3.15) (Glycolate oxidase 5) (GOX 5) (OsGLO5) (Short chain alpha-hydroxy acid oxidase GLO5),Os08g0198700 protein (Fragment),Os07g0152900 protein Q10CE4,Q6YT73,C7J5K1,A0A0P0X354 GLO1_ORYSJ,GLO5_ORYSJ,C7J5K1_ORYSJ,A0A0P0X354_ORYSJ GLO1 GOX Os03g0786100 LOC_Os03g57220 OsJ_12861,GLO5 Os07g0152900 LOC_Os07g05820 B1364A02.33-1 OsJ_23125 OSJNBb0050B07.1-1,Os08g0198700 Os08g0198700 OSNPB_080198700,Os07g0152900 OSNPB_070152900 FUNCTION: Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. {ECO:0000269|PubMed:16595582, ECO:0000269|PubMed:19264754}.,FUNCTION: Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation (By similarity). {ECO:0000250}. ENOG411ECUE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411ECUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411ECUC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ECUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulose synthase NA NA NA NA NA NA NA ENOG411ECUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:FAE_3-kCoA_syn1 NA NA NA NA NA NA NA ENOG411ECUN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alg9-like mannosyltransferase family NA NA NA NA NA NA NA ENOG411ECUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os05g0468400 protein (Fragment) A0A0P0WNH9 A0A0P0WNH9_ORYSJ Os05g0468400 OSNPB_050468400 ENOG411ECUK COL3 Q9SK53,Q3EBU4 COL3_ARATH,Q3EBU4_ARATH Zinc finger protein CONSTANS-LIKE 3,CONSTANS-like 3 Mutant plants have longer hypocotyls in red light and in short days. Unlike constans the col3 mutant flowers early and shows a reduced number of lateral branches in short days. The mutant also exhibits reduced formation of lateral roots. The col3 mutation partially suppresses the cop1 and deetiolated1 (det1) mutations in the dark Long hypocotyl under red light and short days; Early flowering and reduced lateral branching under short days; Short roots and few lateral roots under continuous light-M. Holm-2006 32324,24305 Zinc finger protein CONSTANS-LIKE 3,CONSTANS-like 3 nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; red light signaling pathway [GO:0010161]; regulation of flower development [GO:0009909]; regulation of photomorphogenesis [GO:0010099],intracellular [GO:0005622]; zinc ion binding [GO:0008270] locus:2047246; AT2G24790 B-box zinc finger NA NA NA NA NA NA NA ENOG411ECUJ JAL36 Q9LIF8 JAL36_ARATH Jacalin-related lectin 36 49724 Jacalin-related lectin 36 carbohydrate binding [GO:0030246] locus:2089443; AT3G21380 Jacalin NA NA NA NA NA NA NA ENOG411ECUI Q9SG85 FB139_ARATH Putative F-box protein At3g10790 37044 Putative F-box protein At3g10790 chloroplast [GO:0009507] locus:2103207; AT3G10790 F-box associated domain NA NA NA NA NA NA NA ENOG411ECUW GAMMACA3 Q94AU7 GCA3_ARATH Gamma carbonic anhydrase 3, mitochondrial (AtCA3) (GAMMA CA3) (EC 4.2.1.-) FUNCTION: Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration (By similarity). {ECO:0000250}. MetaCyc:AT5G66510-MONOMER; 4.2.1.- 27837 Gamma carbonic anhydrase 3, mitochondrial (AtCA3) (GAMMA CA3) (EC 4.2.1.-) mitochondrial membrane [GO:0031966]; mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]; respiratory chain complex I [GO:0045271]; carbonate dehydratase activity [GO:0004089]; metal ion binding [GO:0046872]; photorespiration [GO:0009853]; protein homotrimerization [GO:0070207]; response to cytokinin [GO:0009735] locus:2154840; AT5G66510 Gamma carbonic anhydrase 3 NA NA NA NA NA NA NA ENOG411ECUU Q9FHQ5,Q9FG48,A0A1P8BD25 Q9FHQ5_ARATH,Q9FG48_ARATH,A0A1P8BD25_ARATH Similarity to unknown protein,Uncharacterized protein 71042,72162,72364 Similarity to unknown protein,Uncharacterized protein locus:2151699;,locus:2182548; AT5G37650,AT5G37400 Family of unknown function (DUF577) NA NA NA NA NA NA NA ENOG411ECUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECUS A0A1P8B6T4,Q9T033,A0A1P8B6S7,F4JVC4 A0A1P8B6T4_ARATH,Q9T033_ARATH,A0A1P8B6S7_ARATH,F4JVC4_ARATH Leucine-rich repeat protein kinase family protein,Leucine-rich repeat protein kinase family protein (Receptor protein kinase-like protein) 73510,94847,74414,76497 Leucine-rich repeat protein kinase family protein,Leucine-rich repeat protein kinase family protein (Receptor protein kinase-like protein) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713] locus:2136313; AT4G39270 STYKc NA NA NA NA NA NA NA ENOG411ECUR SSL8 Q9M1J7 SSL8_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 8 (AtSSL8) (Strictosidine synthase 5) (AtSS5) ARA:AT3G57010-MONOMER; 41980 Protein STRICTOSIDINE SYNTHASE-LIKE 8 (AtSSL8) (Strictosidine synthase 5) (AtSS5) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; vacuole [GO:0005773]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058] locus:2080660; AT3G57010 Strictosidine synthase family protein NA NA NA NA NA NA NA ENOG411ECUQ T24C20_100 Q9LHD8,Q9STR6,F4IZ09 FB189_ARATH,Q9STR6_ARATH,F4IZ09_ARATH Putative F-box protein At3g28280,F-box protein (Uncharacterized protein T24C20_100),F-box family protein 35344,23923,45343 Putative F-box protein At3g28280,F-box protein (Uncharacterized protein T24C20_100),F-box family protein locus:2100474;,locus:4515103149; AT3G28280,AT3G48220,AT3G28223 NA NA NA NA NA NA NA NA ENOG411ECUP GGP1 Q9M0A7 GGP1_ARATH Gamma-glutamyl peptidase 1 (EC 3.4.19.-) FUNCTION: Involved in glucosinolate biosynthesis. Hydrolyzes the gamma-glutamyl peptide bond of several glutathione (GSH) conjugates to produce Cys-Gly conjugates related to glucosinolates. The gamma-Glu-Cys-Gly-GSH conjugates are the sulfur-donating molecule in glucosinolate biosynthesis (PubMed:19483696, PubMed:21712415). Converts phenylacetohydroximoyl-GSH to benzylglucosinolate (PubMed:19483696). Can use the GSH conjugate of the camalexin intermediate IAN (GS-IAN) as substrate. Required for the biosynthesis of camalexin, a pathogen-inducible phytoalexin with antibacterial and antifungal properties (PubMed:21712415). {ECO:0000269|PubMed:19483696, ECO:0000269|PubMed:21712415}. PATHWAY: Secondary metabolite biosynthesis. {ECO:0000305}. ARA:AT4G30530-MONOMER;MetaCyc:AT4G30530-MONOMER; 3.4.19.- 28385 Gamma-glutamyl peptidase 1 (EC 3.4.19.-) cytosol [GO:0005829]; gamma-glutamyl-peptidase activity [GO:0034722]; peptidase activity [GO:0008233]; camalexin biosynthetic process [GO:0010120]; glucosinolate metabolic process [GO:0019760] locus:2118821; AT4G30530 Defense-related protein NA NA NA NA NA NA NA ENOG411ECU6 Q9FL63 Y5410_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 67963 Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2178712; AT5G24100 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411ECU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion transport protein Os02g0255000 protein (cDNA clone:J023078M02, full insert sequence) B7EQ98 B7EQ98_ORYSJ Os02g0255000 OSNPB_020255000 ENOG411ECU3 F4J1D9 NAI2L_ARATH NAI2-like protein 54479 NAI2-like protein ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298] locus:2093935; AT3G15960 NA NA NA NA NA NA NA NA ENOG411ECU1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ECU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECU9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA pseudouridylate synthase NA NA NA NA NA NA NA ENOG411ECHD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA von Willebrand factor type A domain NA NA NA NA NA NA NA ENOG411ECHE PRA1A2 Q8GWC3 PR1A2_ARATH PRA1 family protein A2 (AtPRA1.A2) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 24187 PRA1 family protein A2 (AtPRA1.A2) endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192] locus:1005716110; AT5G05987 prenylated rab acceptor NA NA NA NA NA NA NA ENOG411ECHG A0A1P8AN44,F4I9U8,F4I9U7,F4I9U5 A0A1P8AN44_ARATH,F4I9U8_ARATH,F4I9U7_ARATH,F4I9U5_ARATH Ubiquitin carboxyl-terminal hydrolase-related protein 126571,128087,130890,126443 Ubiquitin carboxyl-terminal hydrolase-related protein nucleic acid binding [GO:0003676]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579],hydrolase activity [GO:0016787]; nucleic acid binding [GO:0003676] locus:2200360;,locus:2200355; AT1G65120,AT1G65110 ubiquitin carboxyl-terminal hydrolase-related NA NA NA NA NA NA NA ENOG411ECHA SPP3A Q93WU4 SPP3A_ARATH Probable sucrose-phosphatase 3a (AtSPP3a) (EC 3.1.3.24) FUNCTION: Catalyzes the final step of sucrose synthesis. {ECO:0000250}. PATHWAY: Glycan biosynthesis; sucrose biosynthesis; sucrose from D-fructose 6-phosphate and UDP-alpha-D-glucose: step 2/2. ARA:AT3G54270-MONOMER; 3.1.3.24 48644 Probable sucrose-phosphatase 3a (AtSPP3a) (EC 3.1.3.24) magnesium ion binding [GO:0000287]; sucrose-phosphate phosphatase activity [GO:0050307]; transferase activity, transferring glycosyl groups [GO:0016757]; sucrose biosynthetic process [GO:0005986] locus:2080295; AT3G54270 Sucrose-6-phosphate phosphohydrolase C-terminal NA NA NA NA NA NA NA ENOG411ECHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine Rich Repeat Os02g0150600 protein (Fragment) A0A0P0VEY5 A0A0P0VEY5_ORYSJ Os02g0150600 OSNPB_020150600 ENOG411ECHJ UGT76C5,UGT76C3,UGT76C1,UGT76C4 Q9FI97,Q9FI96,Q9FI99,Q9FI98 U76C5_ARATH,U76C3_ARATH,U76C1_ARATH,U76C4_ARATH UDP-glycosyltransferase 76C5 (EC 2.4.1.-),UDP-glycosyltransferase 76C3 (EC 2.4.1.-),UDP-glycosyltransferase 76C1 (EC 2.4.1.-) (Cytokinin-N-glucosyltransferase 1),UDP-glycosyltransferase 76C4 (EC 2.4.1.-) FUNCTION: Involved in the N-glucosylation of cytokinins. Catalyzes the formation of both the 7-N and the 9-N-glucosides. {ECO:0000269|PubMed:15342621}. ARA:AT5G05890-MONOMER;,ARA:AT5G05900-MONOMER;,MetaCyc:AT5G05870-MONOMER;,ARA:AT5G05880-MONOMER; 2.4.1.118; 2.4.1.- 51738,51351,52360,51626 UDP-glycosyltransferase 76C5 (EC 2.4.1.-),UDP-glycosyltransferase 76C3 (EC 2.4.1.-),UDP-glycosyltransferase 76C1 (EC 2.4.1.-) (Cytokinin-N-glucosyltransferase 1),UDP-glycosyltransferase 76C4 (EC 2.4.1.-) cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; nicotinate-N-glucosyltransferase activity [GO:0050139]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],intracellular membrane-bounded organelle [GO:0043231]; cytokinin 7-beta-glucosyltransferase activity [GO:0047807]; cytokinin 9-beta-glucosyltransferase activity [GO:0080062]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2153634;,locus:2153644;,locus:2153614;,locus:2153624; AT5G05890,AT5G05900,AT5G05870,AT5G05880 UDP-glucosyl transferase 76C1 NA NA NA NA NA NA NA ENOG411ECHZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DX48 PAP10 Q8W4F1 PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic (Fibrillin-8) 31580 Probable plastid-lipid-associated protein 10, chloroplastic (Fibrillin-8) chloroplast [GO:0009507]; plastoglobule [GO:0010287] locus:2041454; AT2G46910 plastid-lipid-associated protein 10 Os10g0509200 protein A0A0N7KS21 A0A0N7KS21_ORYSJ Os10g0509200 OSNPB_100509200 ENOG411DX43 HCC2 Q8LAL0 SCO12_ARATH Protein SCO1 homolog 2, mitochondrial (Homolog of the copper chaperone SCO1 member 2) (HCC2) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21543521}. FUNCTION: Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX (By similarity). Participates in copper and redox homeostasis. {ECO:0000250, ECO:0000269|PubMed:21543521}. 30771 Protein SCO1 homolog 2, mitochondrial (Homolog of the copper chaperone SCO1 member 2) (HCC2) integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; copper ion homeostasis [GO:0055070] TISSUE SPECIFICITY: Expressed in the whole plant with highest expression in imbibed seeds and embryos, and the root hair zone. {ECO:0000269|PubMed:21543521}. locus:2135232; AT4G39740 electron transport SCO1 SenC family protein Os09g0370200 protein (Putative SenC) (cDNA clone:J013000D13, full insert sequence) Q6H4G4 Q6H4G4_ORYSJ Os09g0370200 Os09g0370200 B1168F12.6 OsJ_29115 OSNPB_090370200 ENOG411E6NY Q9SIN3 Q9SIN3_ARATH Late embryogenesis abundant domain-containing protein / LEA domain-containing protein (Putative seed maturation protein) 67195 Late embryogenesis abundant domain-containing protein / LEA domain-containing protein (Putative seed maturation protein) cytosol [GO:0005829] locus:2041584; AT2G42560 Seed biotin-containing protein NA NA NA NA NA NA NA ENOG411DU3S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methylketone synthase Ib NA NA NA NA NA NA NA ENOG411E6NJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os05g0579600 protein (cDNA, clone: J065171E20, full insert sequence) Q0DFN8 Q0DFN8_ORYSJ Os05g0579600 Os05g0579600 OsJ_19669 OSNPB_050579600 ENOG411E6NH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EFT2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EMP24_GP25L NA NA NA NA NA NA NA ENOG411EFTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EFTD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0DX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gal-bind_lectin Hexosyltransferase (EC 2.4.1.-),Os07g0195200 protein (Putative beta-1,3-galactosyltransferase 5),Os03g0803900 protein Q2QUE9,Q6ZKZ3,B9FN94,A0A0P0W4Y2 Q2QUE9_ORYSJ,Q6ZKZ3_ORYSJ,B9FN94_ORYSJ,A0A0P0W4Y2_ORYSJ Os12g0265400 LOC_Os12g16480 OSNPB_120265400,Os07g0195200 OJ1715_A07.15 OSNPB_070195200,Os12g0265600 OsJ_17651 OSNPB_120265600,Os03g0803900 OSNPB_030803900 ENOG411EFTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Tyrosyl-trna synthetase NA NA NA NA NA NA NA ENOG411EFTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPIases accelerate the folding of proteins NA NA NA NA NA NA NA ENOG411EFTA F25L23_130 Q9LX44 Q9LX44_ARATH FBD-like domain family protein (Uncharacterized protein F25L23_130) 38451 FBD-like domain family protein (Uncharacterized protein F25L23_130) locus:2081282; AT3G59270 FBD NA NA NA NA NA NA NA ENOG411EFTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFTX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EFTU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) NA NA NA NA NA NA NA ENOG411EFTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis NA NA NA NA NA NA NA ENOG411EFTP Q9LJ40 Q9LJ40_ARATH Uncharacterized protein 17504 Uncharacterized protein locus:2093126; AT3G24690 NA NA NA NA NA NA NA NA ENOG411EFTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family Os06g0266266 protein A0A0N7KLW5 A0A0N7KLW5_ORYSJ Os06g0266266 OSNPB_060266266 ENOG411EHU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHU6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHU8 ARGOS Q6NMD6 ARGOS_ARATH Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE (AtARGOS) DISRUPTION PHENOTYPE: Reduced aerial organs mainly due to changes in cell number and the duration of organ growth. When associated with ORS1 disruption, reduction in organ size. {ECO:0000269|PubMed:12953103, ECO:0000269|PubMed:21457262}. Smaller organs with a c. 12% reduction in the average blade area of the fully expanded & FUNCTION: Promotes cell proliferation-dependent organ growth. Takes part in the AXR1-dependent auxin signaling pathway that requires ANT during organogenesis. {ECO:0000269|PubMed:12953103, ECO:0000269|PubMed:21457262}. 14695 Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE (AtARGOS) cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular [GO:0005622]; membrane [GO:0016020]; nucleus [GO:0005634]; cellular response to ethylene stimulus [GO:0071369]; multicellular organism development [GO:0007275]; positive regulation of organ growth [GO:0046622]; regulation of cell proliferation [GO:0042127]; regulation of developmental growth [GO:0048638]; response to auxin [GO:0009733] DEVELOPMENTAL STAGE: In flowers, accumulates in stamen filaments as well as in the apices and bases of juvenile and elongating siliques. Present in leaf primordia. {ECO:0000269|PubMed:12953103}. TISSUE SPECIFICITY: Mostly expressed in flowers, inflorescence stems, leaf primordia and young leaves, and, to a lower extent, in siliques, cotyledon vascular bundles, roots (pericycle and root tips) and mature leaves. {ECO:0000269|PubMed:12953103}. locus:2080497; AT3G59900 auxin-regulated gene involved in organ size NA NA NA NA NA NA NA ENOG411EHUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHUG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0151850 protein A0A0P0VT19 A0A0P0VT19_ORYSJ Os03g0151850 OSNPB_030151850 ENOG411EHUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LysR substrate binding domain NA NA NA NA NA NA NA ENOG411EHUU Q9M0B4,Q9M0B5 Q9M0B4_ARATH,Q9M0B5_ARATH Glycine-rich protein (Uncharacterized protein At4g30460),At4g30450 (Glycine-rich protein) 13738,9530 Glycine-rich protein (Uncharacterized protein At4g30460),At4g30450 (Glycine-rich protein) locus:2118726;,locus:2118716; AT4G30460,AT4G30450 NA Os09g0425200 protein A0A0P0XMF8 A0A0P0XMF8_ORYSJ Os09g0425200 OSNPB_090425200 ENOG411EHUR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0452500 protein (Transposon protein, putative, CACTA, En/Spm sub-class, expressed) Q7XDT4 Q7XDT4_ORYSJ LOC_Os10g31500 Os10g0452500 OSNPB_100452500 ENOG411EHUS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411EHUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0DB sks16,C7A10.200,sks15 O64838,O23170,A0A1P8B884,A0A1P8B128 O64838_ARATH,O23170_ARATH,A0A1P8B884_ARATH,A0A1P8B128_ARATH Putative pectinesterase (SKU5 similar 16),Pectinesterase like protein (EC 3.1.1.11) (SKU5 similar 15),SKU5 similar 15,SKU5 similar 16 ARA:AT2G23630-MONOMER;,ARA:GQT-26-MONOMER; 3.1.1.11 61029,60777,49856,61575 Putative pectinesterase (SKU5 similar 16),Pectinesterase like protein (EC 3.1.1.11) (SKU5 similar 15),SKU5 similar 15,SKU5 similar 16 plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; floral organ abscission [GO:0010227],plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722]; pectinesterase activity [GO:0030599],copper ion binding [GO:0005507]; oxidoreductase activity [GO:0016491] locus:2046763;,locus:2115154; AT2G23630,AT4G37160 Multicopper oxidase NA NA NA NA NA NA NA ENOG411E0DF Q8L603,F4JUU4 Q8L603_ARATH,F4JUU4_ARATH Serine/Threonine-kinase, putative (DUF1639) (Uncharacterized protein At4g20300),Serine/Threonine-kinase, putative (DUF1639) 39664,38134 Serine/Threonine-kinase, putative (DUF1639) (Uncharacterized protein At4g20300),Serine/Threonine-kinase, putative (DUF1639) kinase activity [GO:0016301] locus:2120342; AT4G20300 expressed protein Os01g0680700 protein (cDNA clone:002-118-H11, full insert sequence),Os01g0680700 protein (cDNA clone:002-186-B05, full insert sequence),Os01g0680700 protein (cDNA clone:J023138C03, full insert sequence) Q5QLF5,Q5QLF4,Q5QLF6 Q5QLF5_ORYSJ,Q5QLF4_ORYSJ,Q5QLF6_ORYSJ P0019E03.11-3 Os01g0680700 OSNPB_010680700,P0019E03.11-2 Os01g0680700 OSNPB_010680700,P0019E03.11-1 Os01g0680700 OSNPB_010680700 ENOG411E0DN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 Probable glucomannan 4-beta-mannosyltransferase 6 (EC 2.4.1.32) (Cellulose synthase-like protein A6) (OsCslA6) (Glucomannan synthase) (Mannan synthase 6),Os02g0744650 protein Q6Z2T9,A0A0P0VPY3 CSLA6_ORYSJ,A0A0P0VPY3_ORYSJ CSLA6 Os02g0744600/Os02g0744650 Os02g0744500 LOC_Os02g51060 OJ1118_G04.6 OJ1734_E02.33,Os02g0744650 OSNPB_020744650 FUNCTION: Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. {ECO:0000250|UniProtKB:Q7PC76}. ENOG411DRHB FAD2 P46313 FAD6E_ARATH Delta(12)-fatty-acid desaturase (EC 1.14.19.22) (EC 1.14.19.6) (Omega-6 fatty acid desaturase, endoplasmic reticulum) DISRUPTION PHENOTYPE: Enhancement of both microviscosity and lipid/protein ratio of mitochondrial membranes, which in turn were responsible for the change in lateral mobility of lipids and for bioenergetic parameter modifications (PubMed:11104757). Increased membrane rigidity and cold sensitivity (PubMed:17507388). Hypersensitivity to salt or osmotic stress (PubMed:22279586). {ECO:0000269|PubMed:11104757, ECO:0000269|PubMed:17507388, ECO:0000269|PubMed:22279586}. Sensitive to low temperature-C. Somerville-1992 FUNCTION: ER (microsomal) omega-6 fatty acid desaturase introduces the second double bond in the biosynthesis of 18:3 fatty acids, important constituents of plant membranes (PubMed:14593172, PubMed:7907506). Delta(12)-desaturase with regioselectivity determined by the double bond (delta(9) position) and carboxyl group of the substrate. Can use both 16:1 and 18:1 fatty acids as substrates (PubMed:8685264). It is thought to use cytochrome b5 as an electron donor and to act on fatty acids esterified to phosphatidylcholine (PC) and, possibly, other phospholipids (PubMed:14593172, PubMed:7907506, PubMed:1730697). Very low constitutive hydroxylation activity (PubMed:11864983). Required for desaturation of fatty acids present in extraplastidial membranes, including mitochondria (PubMed:11104757, PubMed:17507388). Required for salt tolerance during seed germination and early seedling growth (PubMed:22279586). {ECO:0000269|PubMed:11104757, ECO:0000269|PubMed:11864983, ECO:0000269|PubMed:14593172, ECO:0000269|PubMed:1730697, ECO:0000269|PubMed:17507388, ECO:0000269|PubMed:22279586, ECO:0000269|PubMed:7907506, ECO:0000269|PubMed:8685264}. MISCELLANEOUS: Introduction of Ile at position 146 or 324 has a dominant role in specifying hydroxylation activity. {ECO:0000269|PubMed:11864983}. PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. MetaCyc:AT3G12120-MONOMER; 1.14.19.22; 1.14.19.6 44048 Delta(12)-fatty-acid desaturase (EC 1.14.19.22) (EC 1.14.19.6) (Omega-6 fatty acid desaturase, endoplasmic reticulum) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; organelle membrane [GO:0031090]; Delta12-fatty-acid desaturase activity [GO:0102985]; omega-6 fatty acid desaturase activity [GO:0045485]; unsaturated fatty acid biosynthetic process [GO:0006636] TISSUE SPECIFICITY: Expressed in shoots and roots (PubMed:7907506, PubMed:22279586). Expressed in leaves, stems, flowers and siliques (PubMed:22279586). {ECO:0000269|PubMed:22279586, ECO:0000269|PubMed:7907506}. locus:2099297; AT3G12120 fatty acid desaturase Delta-12 fatty acid desaturase (Os02g0716500 protein) (Putative delta-12 oleate desaturase),Os02g0716500 protein (Fragment) Q6ZGW6,A0A0P0VP66 Q6ZGW6_ORYSJ,A0A0P0VP66_ORYSJ FAD2 OJ1191_G08.29-1 Os02g0716500 OJ2056_H01.1-1 OsJ_08147 OSNPB_020716500,Os02g0716500 OSNPB_020716500 ENOG411DRHC Q9SAH2 PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880, mitochondrial 61708 Pentatricopeptide repeat-containing protein At1g80880, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2025747; AT1G80880 pentatricopeptide repeat-containing protein At1g80880 Os08g0272200 protein A0A0N7KPK3 A0A0N7KPK3_ORYSJ Os08g0272200 OSNPB_080272200 ENOG411DRHA PPC6-1 Q9M8R7,Q9SA22,Q8RXZ4,A0A1P8AM53,A0A1P8AM60 P2C33_ARATH,P2C06_ARATH,P2C18_ARATH,A0A1P8AM53_ARATH,A0A1P8AM60_ARATH Probable protein phosphatase 2C 33 (AtPP2C33) (EC 3.1.3.16) (AtPPC6;1),Probable protein phosphatase 2C 6 (AtPP2C06) (EC 3.1.3.16),Probable protein phosphatase 2C 18 (AtPP2C18) (EC 3.1.3.16),Protein phosphatase 2C family protein R-ATH-70895; 3.1.3.16 53715,54353,55604,55304,48237 Probable protein phosphatase 2C 33 (AtPP2C33) (EC 3.1.3.16) (AtPPC6;1),Probable protein phosphatase 2C 6 (AtPP2C06) (EC 3.1.3.16),Probable protein phosphatase 2C 18 (AtPP2C18) (EC 3.1.3.16),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2075487;,locus:2032880;,locus:2019868; AT3G02750,AT1G16220,AT1G79630 phosphatase 2C Probable protein phosphatase 2C 66 (OsPP2C66) (EC 3.1.3.16) Q6ZKL8 P2C66_ORYSJ Os08g0500300 LOC_Os08g39100 OJ1118_A06.15 OsJ_026714 ENOG411DRHF FBL17 Q8W104 FBL17_ARATH F-box/LRR-repeat protein 17 (F-box-like protein 17) DISRUPTION PHENOTYPE: Stabilization of KRP6 and inhibition of germ cell cycle progression leading to male sterility. {ECO:0000269|PubMed:18948957}. Male gametophyte defective; Bicellular pollen; 50% defective seeds-P. Genschik-2009 FUNCTION: Essential protein for male fertility. Component of the SCF(ASK-cullin-F-box) E3 ubiquitin ligase complex SCF(FBL17), which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Enables the switch in cell cycle control leading to male germ cell lineage formation from microspores after meiosis. Targets CDKA-1 inhibitors the degradation specifically in male germ cells (e.g. KRP6 and KRP7) and thus enables CDKA-1 activation and germ cell S-phase progression. Promotes twin sperm cell production and double fertilization. {ECO:0000269|PubMed:18948957}. PATHWAY: Protein modification; protein ubiquitination. 64769 F-box/LRR-repeat protein 17 (F-box-like protein 17) male germ cell nucleus [GO:0001673]; SCF ubiquitin ligase complex [GO:0019005]; embryo development ending in seed dormancy [GO:0009793]; generative cell mitosis [GO:0055047]; pollen development [GO:0009555]; protein ubiquitination [GO:0016567]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]; seed development [GO:0048316] DEVELOPMENTAL STAGE: Expressed transiently in the male germ line after asymmetric division. Present in maturing pollen with highest levels in bicellular pollen. {ECO:0000269|PubMed:18948957}. TISSUE SPECIFICITY: Expressed in developing pollen. {ECO:0000269|PubMed:18948957}. locus:2102400; AT3G54650 F-box LRR-repeat protein Os03g0633400 protein (Fragment),Os12g0601000 protein,Os03g0633100 protein A0A0P0W0E8,A0A0P0YBX4,A0A0P0W160 A0A0P0W0E8_ORYSJ,A0A0P0YBX4_ORYSJ,A0A0P0W160_ORYSJ Os03g0633400 OSNPB_030633400,Os12g0601000 OSNPB_120601000,Os03g0633100 OSNPB_030633100 ENOG411DRHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA aspartic proteinase Os06g0304600 protein (Fragment),Os06g0304600 protein (Putative 41 kD chloroplast nucleoid DNA binding protein) (cDNA clone:J033099D18, full insert sequence),Os02g0720900 protein (Putative chloroplast nucleoid DNA-binding protein cnd41) (cDNA clone:001-035-D10, full insert sequence),Os02g0720900 protein (Fragment) Q0DCP3,Q5Z4E5,Q6Z671,A0A0N7KG02 Q0DCP3_ORYSJ,Q5Z4E5_ORYSJ,Q6Z671_ORYSJ,A0A0N7KG02_ORYSJ Os06g0304600 Os06g0304600 OSNPB_060304600,B1386G10.6-1 Os06g0304600 OSNPB_060304600,P0654B04.7-1 OJ1008_D06.22-1 Os02g0720900 OSNPB_020720900,Os02g0720900 OSNPB_020720900 ENOG411DRHJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 Os04g0430700 protein Q0JD53 Q0JD53_ORYSJ Os04g0430700 Os04g0430700 OSNPB_040430700 ENOG411DRHK Q0WVM5 Q0WVM5_ARATH Nucleolar protein (Uncharacterized protein At1g63810) R-ATH-6791226; 120150 Nucleolar protein (Uncharacterized protein At1g63810) CURI complex [GO:0032545]; cytosol [GO:0005829]; small-subunit processome [GO:0032040]; UTP-C complex [GO:0034456]; RNA binding [GO:0003723]; rRNA processing [GO:0006364]; tRNA export from nucleus [GO:0006409] locus:2195523; AT1G63810 Nucleolar protein Os12g0166500 protein A0A0P0Y7P3 A0A0P0Y7P3_ORYSJ Os12g0166500 OSNPB_120166500 ENOG411DRHH A0A1P8B0S5,A0A1P8B0P2,A0A1P8B0U5,F4IV62 A0A1P8B0S5_ARATH,A0A1P8B0P2_ARATH,A0A1P8B0U5_ARATH,F4IV62_ARATH Uncharacterized protein 123185,134898,127094,137914 Uncharacterized protein locus:504955949; AT2G04235 NA Os06g0608100 protein A0A0P0WYI0 A0A0P0WYI0_ORYSJ Os06g0608100 OSNPB_060608100 ENOG411DRHI map4kalpha2,ATMAP4K ALPHA1 Q9LDN6,F4HPS1,F4HPS0,F4HPR9 Q9LDN6_ARATH,F4HPS1_ARATH,F4HPS0_ARATH,F4HPR9_ARATH MAP kinase (Map 4 kinase alpha2) (Protein kinase superfamily protein) (Putative MAP kinase),Protein kinase superfamily protein R-ATH-75153; 76318,75976,75447,76518 MAP kinase (Map 4 kinase alpha2) (Protein kinase superfamily protein) (Putative MAP kinase),Protein kinase superfamily protein cytoplasm [GO:0005737]; spindle [GO:0005819]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; regulation of mitotic cell cycle [GO:0007346]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098],ATP binding [GO:0005524]; protein kinase activity [GO:0004672],cytoplasm [GO:0005737]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; activation of protein kinase activity [GO:0032147]; hyperosmotic response [GO:0006972]; regulation of mitotic cell cycle [GO:0007346]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098] locus:2087130;,locus:2824247; AT3G15220,AT1G53165 S_TKc Os07g0507300 protein (Putative MAP4 kinase),Os07g0507300 protein (Putative MAP4 kinase) (cDNA clone:J033096J18, full insert sequence) Q7EZ28,Q7EZ29 Q7EZ28_ORYSJ,Q7EZ29_ORYSJ OSJNBb0062D12.129-2 Os07g0507300 OSNPB_070507300,OSJNBb0062D12.129-1 Os07g0507300 OSNPB_070507300 ENOG411DRHM APRR5 Q6LA42 APRR5_ARATH Two-component response regulator-like APRR5 (Pseudo-response regulator 5) Short circadian rhythms; Late flowering; Sensitive to red light-T. Mizuno-2003 FUNCTION: Transcriptional repressor of CCA1 and LHY, thereby controlling photoperiodic flowering response. Involved in the positive and negative feedback loops of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. Proteolytic substrate of the E3 ubiquitin ligase SCF(ADO1) complex. APRR9, APRR7, and APRR5 coordinately act on the upstream region of the target genes to repress their expression from noon until midnight. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Negative regulator of shade avoidance response. Involved in the inhibition of leaf expansion in shade avoidance response. {ECO:0000269|PubMed:11100772, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:21357491, ECO:0000269|PubMed:23027938, ECO:0000269|PubMed:23333981}. MISCELLANEOUS: The expression of APRR9, APRR7, and APRR5 requires the presence of LWD1 and/or LWD2, indicating the existence of a positive feedback loop within the circadian clock. {ECO:0000305|PubMed:21357491}. 62301 Two-component response regulator-like APRR5 (Pseudo-response regulator 5) nucleus [GO:0005634]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; rhythmic process [GO:0048511]; transcription, DNA-templated [GO:0006351] AT5G24470 Two-component response regulator-like Two-component response regulator-like PRR95 (Pseudo-response regulator 95) (OsPRR95) Q689G6 PRR95_ORYSJ PRR95 Os09g0532400 LOC_Os09g36220 OJ1254_E07.28 OsJ_30112 P0515E01.13 FUNCTION: Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock (By similarity). {ECO:0000250}. ENOG411DRHR RPS3B,RPS3A,RPS3C Q9M339,Q9SIP7,Q9FJA6 RS32_ARATH,RS31_ARATH,RS33_ARATH 40S ribosomal protein S3-2,40S ribosomal protein S3-1,40S ribosomal protein S3-3 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72695;R-ATH-72702;R-ATH-72706;R-ATH-975956;R-ATH-975957; 27349,27519,27458 40S ribosomal protein S3-2,40S ribosomal protein S3-1,40S ribosomal protein S3-3 cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; damaged DNA binding [GO:0003684]; mRNA binding [GO:0003729]; oxidized purine nucleobase lesion DNA N-glycosylase activity [GO:0008534]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; DNA repair [GO:0006281]; mature ribosome assembly [GO:0042256]; response to salt stress [GO:0009651]; ribosome assembly [GO:0042255],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; damaged DNA binding [GO:0003684]; mRNA binding [GO:0003729]; oxidized purine nucleobase lesion DNA N-glycosylase activity [GO:0008534]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; DNA repair [GO:0006281]; mature ribosome assembly [GO:0042256]; response to salt stress [GO:0009651],cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; damaged DNA binding [GO:0003684]; oxidized purine nucleobase lesion DNA N-glycosylase activity [GO:0008534]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; DNA repair [GO:0006281]; mature ribosome assembly [GO:0042256]; response to salt stress [GO:0009651] locus:2084490;,locus:2065863;,locus:2169518; AT3G53870,AT2G31610,AT5G35530 40s ribosomal protein Os07g0608500 protein (Putative 40S ribosomal protein) (cDNA clone:J013092O21, full insert sequence),40S ribosomal protein S3, putative, expressed (Os03g0577000 protein) (Putative ribosomal protein) (cDNA clone:006-205-G04, full insert sequence) (cDNA clone:J023061B16, full insert sequence) Q6YTY2,Q75G91 Q6YTY2_ORYSJ,Q75G91_ORYSJ Os07g0608500 OsJ_25071 OSJNBa0072I06.38 OSJNBb0018L13.2 OSNPB_070608500,Os03g0577000 LOC_Os03g38000 Os03g0577000 OsJ_11524 OSJNBa0008D12.4 OSNPB_030577000 ENOG411DRHS F28D10_40,MJB20.9,srpk3,SRPK4 Q9FYC5,O81783,Q9SHL5,Q9FE52,F4JN22,F4INJ2,F4J982 Q9FYC5_ARATH,O81783_ARATH,Q9SHL5_ARATH,Q9FE52_ARATH,F4JN22_ARATH,F4INJ2_ARATH,F4J982_ARATH Protein kinase superfamily protein (Uncharacterized protein F28D10_40),Protein kinase - like protein (Protein kinase superfamily protein) (Protein kinase-like protein) (Uncharacterized protein At4g35500) (Uncharacterized protein At4g35500/F8D20_10),At2g17530 (Protein kinase superfamily protein) (SRPK2) (Uncharacterized protein At2g17530),Protein kinase superfamily protein (SRPK3) (Serine protein kinase-like protein),Protein kinase superfamily protein,Ser/arg-rich protein kinase 4 60747,49306,49727,61176,49472,39592,59394 Protein kinase superfamily protein (Uncharacterized protein F28D10_40),Protein kinase - like protein (Protein kinase superfamily protein) (Protein kinase-like protein) (Uncharacterized protein At4g35500) (Uncharacterized protein At4g35500/F8D20_10),At2g17530 (Protein kinase superfamily protein) (SRPK2) (Uncharacterized protein At2g17530),Protein kinase superfamily protein (SRPK3) (Serine protein kinase-like protein),Protein kinase superfamily protein,Ser/arg-rich protein kinase 4 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; regulation of mRNA processing [GO:0050684]; spliceosomal complex assembly [GO:0000245],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; regulation of mRNA processing [GO:0050684]; spliceosomal complex assembly [GO:0000245],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468]; regulation of mRNA processing [GO:0050684]; response to oxidative stress [GO:0006979]; spliceosomal complex assembly [GO:0000245] locus:2082107;,locus:2053938;,locus:2172651;,locus:2127903;,locus:2085151; AT3G44850,AT4G35500,AT2G17530,AT5G22840,AT3G53030 serine threonine-protein kinase Os03g0748400 protein (Protein kinase family protein, putative, expressed) (cDNA clone:J023054B12, full insert sequence),Os09g0552300 protein (Putative dis1-suppressing protein kinase) (cDNA clone:J023026H17, full insert sequence),Os07g0472400 protein Q10CW0,Q69ML8,Q0D6J6 Q10CW0_ORYSJ,Q69ML8_ORYSJ,Q0D6J6_ORYSJ Os03g0748400 LOC_Os03g53720 OSNPB_030748400,Os09g0552300 OsJ_30261 OSNPB_090552300 P0489D11.34,Os07g0472400 Os07g0472400 OSNPB_070472400 ENOG411DRHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH Os08g0129000 protein,Os08g0228200 protein,Os08g0129300 protein (Fragment) A0A0N7KP81,A0A0P0XDF6,A0A0P0XBF9 A0A0N7KP81_ORYSJ,A0A0P0XDF6_ORYSJ,A0A0P0XBF9_ORYSJ Os08g0129000 OSNPB_080129000,Os08g0228200 OSNPB_080228200,Os08g0129300 OSNPB_080129300 ENOG411DRHU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_CA Os07g0248500 protein,Os10g0152000 protein (Protein kinase domain containing protein, expressed) (Putative wall-associated protein kinase),Os10g0111900 protein,Os10g0326100 protein,Os10g0103140 protein (Fragment),Os10g0151500 protein,Os10g0151100 protein,Os07g0248600 protein (Fragment) A3BX84,Q7XGR2,A0A0P0XQY1,A0A0P0XSW5,A0A0P0XQQ3,A0A0P0XRK8,A0A0P0XRM4,A0A0N7KN74 A3BX84_ORYSJ,Q7XGR2_ORYSJ,A0A0P0XQY1_ORYSJ,A0A0P0XSW5_ORYSJ,A0A0P0XQQ3_ORYSJ,A0A0P0XRK8_ORYSJ,A0A0P0XRM4_ORYSJ,A0A0N7KN74_ORYSJ Os07g0248500 OsJ_28794 OSNPB_070248500,Os10g0152000 OSJNBa0028C16.9 LOC_Os10g06140 OsJ_30750 OSNPB_100152000,Os10g0111900 OSNPB_100111900,Os10g0326100 OSNPB_100326100,Os10g0103140 OSNPB_100103140,Os10g0151500 OSNPB_100151500,Os10g0151100 OSNPB_100151100,Os07g0248600 OSNPB_070248600 ENOG411DRHZ RGS1 Q8H1F2,A0A1I9LSX6 RGS1_ARATH,A0A1I9LSX6_ARATH Regulator of G-protein signaling 1 (AtRGS1),REGULATOR OF G-PROTEIN SIGNALING 1 DISRUPTION PHENOTYPE: Increased cell elongation and longer hypocotyls when grown in the dark. Longer primary roots when grown in light due to increased cell production in root meristem. Loss of stratification requirement for seed germination. Decreased sensitivity to glucose and abscisic acid (ABA) in seed germination process. No effect on ABA inhibition of stomatal opening. {ECO:0000269|PubMed:14500984, ECO:0000269|PubMed:15313575, ECO:0000269|PubMed:16361523, ECO:0000269|PubMed:18541915}. Altered cell proliferation; increased cell elongation in hypocotyls in darkness (longer hypocotyls than wild type); increased cell production in roots grown in light (longer roots than wild type); altered sugar sensing; kanamycin resistant or silenced. Tolerant to high glucose concentration (6%). Long primary roots; Short hypocotyl in the dark-D. Siderovski-2003 FUNCTION: Glucose-regulated GTPase-accelerating protein (GAP) for the GTP-bound self-activating heterotrimeric G alpha protein GPA1. Cooperates with G beta-gamma dimers to maintain an unactivated but fully functional pool of GPA1. Phosphorylation-dependent endocytosis of RGS1 physically uncouples the two proteins, resulting in signal activation. Free AGB1 is essential, but not sufficient, for RGS1 endocytosis. Modulates cell proliferation, abscisic acid (ABA) and drought stress signal transduction by acting in a hexokinase-independent glucose-signaling pathway (PubMed:26528314). Involved in the shapes of leaves, the development of floral buds, the elongation of stems, siliques, and hypocotyls, the time of flowering and the regulation of guard-cell K(+) and anion channels. Important for the kinetics of voltage activation of inward K(+) current but not for the current amplitude. {ECO:0000269|PubMed:14500984, ECO:0000269|PubMed:15313575, ECO:0000269|PubMed:16361523, ECO:0000269|PubMed:16714312, ECO:0000269|PubMed:17951432, ECO:0000269|PubMed:18541915, ECO:0000269|PubMed:18817773, ECO:0000269|PubMed:21325279, ECO:0000269|PubMed:22940907, ECO:0000269|PubMed:26528314}. 52947,45991 Regulator of G-protein signaling 1 (AtRGS1),REGULATOR OF G-PROTEIN SIGNALING 1 endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; G-protein coupled receptor activity [GO:0004930]; GTPase activator activity [GO:0005096]; negative regulation of signal transduction [GO:0009968]; positive regulation of GTPase activity [GO:0043547]; regulation of cell proliferation [GO:0042127]; response to abscisic acid [GO:0009737]; response to glucose [GO:0009749]; response to water deprivation [GO:0009414]; sugar mediated signaling pathway [GO:0010182],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in hypocotyls, cotyledons, guard cells and root and shoot apical meristems. {ECO:0000269|PubMed:14500984, ECO:0000269|PubMed:17951432, ECO:0000269|PubMed:18541915}. locus:2092180; AT3G26090 Regulator of G protein signaling domain NA NA NA NA NA NA NA ENOG411DRHX E1-BETA-2,PDH-E1 BETA O64688,Q9C6Z3 ODPB3_ARATH,ODPB2_ARATH Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic (EC 1.2.4.1) FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. ARA:AT2G34590-MONOMER;,ARA:AT1G30120-MONOMER; 1.2.4.1 44015,44245 Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic (EC 1.2.4.1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; pyruvate dehydrogenase (acetyl-transferring) activity [GO:0004739]; zinc ion binding [GO:0008270]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; glycolytic process [GO:0006096]; pollen tube development [GO:0048868],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plastid pyruvate dehydrogenase complex [GO:0010240]; pyruvate dehydrogenase (acetyl-transferring) activity [GO:0004739]; acetyl-CoA biosynthetic process from pyruvate [GO:0006086]; fatty acid biosynthetic process [GO:0006633]; glycolytic process [GO:0006096] locus:2062351;,locus:2202476; AT2G34590,AT1G30120 pyruvate dehydrogenase E1 component subunit Pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic (EC 1.2.4.1),Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic (EC 1.2.4.1),Os03g0645100 protein (Fragment) Q10G39,Q2QM55,A0A0N7KHQ4,A0A0P0W0N2,A0A0P0W0R7 ODPB4_ORYSJ,ODPB3_ORYSJ,A0A0N7KHQ4_ORYSJ,A0A0P0W0N2_ORYSJ,A0A0P0W0R7_ORYSJ Os03g0645100 LOC_Os03g44300 OsJ_11888,Os12g0616900 LOC_Os12g42230,Os03g0645100 OSNPB_030645100 FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. ENOG411DRH2 Q66GQ1 Q66GQ1_ARATH At1g78010 (tRNA modification GTPase) 61120 At1g78010 (tRNA modification GTPase) intracellular [GO:0005622]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; tRNA modification [GO:0006400] locus:2029406; AT1G78010 tRNA modification GTPase Os08g0407000 protein (Putative tRNA modification GTPase trmE) Q6Z9X4 Q6Z9X4_ORYSJ P0453D01.14 Os08g0407000 OSNPB_080407000 ENOG411DRH3 Q8W476,Q84VZ6,A0A1P8AQV9 Q8W476_ARATH,Q84VZ6_ARATH,A0A1P8AQV9_ARATH Peptidase S24/S26A/S26B/S26C family protein (Uncharacterized protein At1g06200) (Uncharacterized protein At1g06200; F9P14.6),At2g31140 (Peptidase S24/S26A/S26B/S26C family protein) (Uncharacterized protein At2g31140),Peptidase S24/S26A/S26B/S26C family protein 23250,23132,27371 Peptidase S24/S26A/S26B/S26C family protein (Uncharacterized protein At1g06200) (Uncharacterized protein At1g06200; F9P14.6),At2g31140 (Peptidase S24/S26A/S26B/S26C family protein) (Uncharacterized protein At2g31140),Peptidase S24/S26A/S26B/S26C family protein mitochondrial inner membrane peptidase complex [GO:0042720]; mitochondrial respiratory chain complex assembly [GO:0033108]; protein processing involved in protein targeting to mitochondrion [GO:0006627]; signal peptide processing [GO:0006465],mitochondrial inner membrane peptidase complex [GO:0042720]; vacuolar membrane [GO:0005774]; mitochondrial respiratory chain complex assembly [GO:0033108]; protein processing involved in protein targeting to mitochondrion [GO:0006627]; signal peptide processing [GO:0006465] locus:2038535;,locus:2055856; AT1G06200,AT2G31140 Inherit from KOG: Mitochondrial inner membrane protease subunit NA NA NA NA NA NA NA ENOG411DRH0 Q8RXU2,O65522,Q0WPG1,F4JMK5 Q8RXU2_ARATH,O65522_ARATH,Q0WPG1_ARATH,F4JMK5_ARATH Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At4g16745),Exostosin family protein (Glycosyltransferase) (Uncharacterized protein AT4g32790) (Uncharacterized protein F4D11.10),Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At5g25820),Exostosin family protein ARA:GQT-2645-MONOMER;,ARA:AT4G32790-MONOMER; 62987,68632,73526,68254 Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At4g16745),Exostosin family protein (Glycosyltransferase) (Uncharacterized protein AT4g32790) (Uncharacterized protein F4D11.10),Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At5g25820),Exostosin family protein integral component of membrane [GO:0016021]; transferase activity [GO:0016740],transferase activity [GO:0016740],integral component of membrane [GO:0016021] locus:2125687;,locus:2145254;,locus:505006485; AT4G16745,AT4G32790,AT5G25820 exostosin family Os01g0107700 protein (Pectin-glucuronyltransferase-like) (cDNA clone:J023035K17, full insert sequence) Q657X7 Q657X7_ORYSJ Os01g0107700 OsJ_00064 OSNPB_010107700 P0005A05.35 P0482C06.13 ENOG411DRH1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL esterase lipase Os02g0669000 protein (Fragment) A0A0P0VMT8 A0A0P0VMT8_ORYSJ Os02g0669000 OSNPB_020669000 ENOG411DRH6 CCR3 Q9LY50 ACCR3_ARATH Putative serine/threonine-protein kinase-like protein CCR3 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 3) (AtCRR3) FUNCTION: Serine/threonine-protein kinase. 2.7.11.1 87682 Putative serine/threonine-protein kinase-like protein CCR3 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 3) (AtCRR3) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in roots, leaves, shoot apical meristems (SAM), and floral buds. {ECO:0000269|PubMed:15549374}. locus:2082033; AT3G55950 Serine threonine-protein kinase-like protein Os03g0414000 protein (Protein kinase family protein, putative) (Putative receptor kinase),Os05g0127300 protein,Os05g0127300 protein (Fragment) Q75IZ0,C7J2D1,A0A0N7KK31 Q75IZ0_ORYSJ,C7J2D1_ORYSJ,A0A0N7KK31_ORYSJ Os03g0414000 LOC_Os03g30050 Os03g30050 OSNPB_030414000,Os05g0127300 Os05g0127300 OSNPB_050127300,Os05g0127300 OSNPB_050127300 ENOG411DRH7 ORC6 Q9ZVH3 ORC6_ARATH Origin of replication complex subunit 6 (AtORC6) FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. {ECO:0000250|UniProtKB:Q9Y5N6}. R-ATH-68616;R-ATH-68689;R-ATH-68867;R-ATH-68949;R-ATH-68962; 31770 Origin of replication complex subunit 6 (AtORC6) nuclear origin of replication recognition complex [GO:0005664]; origin recognition complex [GO:0000808]; DNA replication origin binding [GO:0003688]; DNA replication [GO:0006260]; DNA replication initiation [GO:0006270]; pollen development [GO:0009555] TISSUE SPECIFICITY: Follow a cell-cycle regulation with a peak at the G1/S-phase (PubMed:16179646). Mostly expressed in siliques, flowers, flower buds and mature leaves, and, to a lower exent, in roots, leaves and stems (PubMed:16179646, PubMed:15358564). {ECO:0000269|PubMed:15358564, ECO:0000269|PubMed:16179646}. locus:2202800; AT1G26840 origin recognition complex subunit Origin of replication complex subunit 6 (OsORC6) Q8GSL4 ORC6_ORYSJ ORC6 LOC_Os07g43540 Os07g0628600 OsJ_25222 P0011H09.106 P0506F02.120 FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. {ECO:0000250|UniProtKB:Q9Y5N6}. ENOG411DRH4 PCMP-H1 Q8VYH0 PP313_ARATH Pentatricopeptide repeat-containing protein At4g15720 68655 Pentatricopeptide repeat-containing protein At4g15720 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] locus:2130644; AT4G15720 Pentatricopeptide repeat-containing protein Os12g0163600 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J013108L03, full insert sequence) Q2QXB0 Q2QXB0_ORYSJ LOC_Os12g06650 Os12g0163600 OsJ_35325 OSNPB_120163600 ENOG411DRH5 Q9ZUX0 Q9ZUX0_ARATH At2g27680/F15K20.22 (Expressed protein) (NAD(P)-linked oxidoreductase superfamily protein) 43154 At2g27680/F15K20.22 (Expressed protein) (NAD(P)-linked oxidoreductase superfamily protein) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; plant-type cell wall [GO:0009505] locus:2042124; AT2G27680 Aldo/keto reductase family Os09g0567350 protein (Os09g0567366 protein) (cDNA clone:J013158P04, full insert sequence),Os09g0567366 protein (Fragment) Q652L5,A0A0N7KRA5,A0A0P0XRE8 Q652L5_ORYSJ,A0A0N7KRA5_ORYSJ,A0A0P0XRE8_ORYSJ OJ1155_H10.28-1 Os09g0567366 Os09g0567350 OSNPB_090567366,Os09g0567366 OSNPB_090567366 ENOG411DRH8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF679) Os05g0562800 protein (cDNA clone:J023138F22, full insert sequence),Os05g0562800 protein (Fragment) Q688X6,Q0DFY7 Q688X6_ORYSJ,Q0DFY7_ORYSJ Os05g0562800 OJ1115_B06.18 OSNPB_050562800,Os05g0562800 Os05g0562800 OSNPB_050562800 ENOG411DRH9 GSNAP Q9SPE5,A0A1P8B661 SNAG_ARATH,A0A1P8B661_ARATH Gamma-soluble NSF attachment protein (Gamma-SNAP) (N-ethylmaleimide-sensitive factor attachment protein gamma),Gamma-soluble NSF attachment protein FUNCTION: Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it (By similarity). {ECO:0000250}. 32360,33241 Gamma-soluble NSF attachment protein (Gamma-SNAP) (N-ethylmaleimide-sensitive factor attachment protein gamma),Gamma-soluble NSF attachment protein plasma membrane [GO:0005886]; SNARE complex [GO:0031201]; vacuolar membrane [GO:0005774]; soluble NSF attachment protein activity [GO:0005483]; syntaxin binding [GO:0019905]; intracellular protein transport [GO:0006886]; membrane fusion [GO:0061025]; vesicle-mediated transport [GO:0016192],intracellular [GO:0005622]; intracellular protein transport [GO:0006886] locus:2128669; AT4G20410 Gamma-soluble nsf attachment OSJNBa0058K23.5 protein (OSJNBa0093O08.15 protein) (Os04g0618500 protein) Q7X6D9 Q7X6D9_ORYSJ Os04g0618500 Os04g0618500 OsJ_16184 OSJNBa0058K23.5 OSJNBa0093O08.15 OSNPB_040618500 ENOG411E4DX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carboxymethylenebutenolidase homolog NA NA NA NA NA NA NA ENOG411EMKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMKF Q8L7B1,F4IJV3 Q8L7B1_ARATH,F4IJV3_ARATH RING/U-box superfamily protein (Uncharacterized protein At2g35330),RING/U-box superfamily protein 82479,79167 RING/U-box superfamily protein (Uncharacterized protein At2g35330),RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin-protein transferase activity [GO:0004842]; regulation of signal transduction [GO:0009966] locus:2062374; AT2G35330 RING NA NA NA NA NA NA NA ENOG411EMKD PLP8,PLP7 Q8H133,Q9SV43 PLP8_ARATH,PLP7_ARATH Patatin-like protein 8 (AtPLP8) (EC 3.1.1.-) (Patatin-related phospholipase A IIIgamma) (pPLAIIIg) (Phospholipase A IVD) (AtPLAIVD),Patatin-like protein 7 (AtPLP7) (EC 3.1.1.-) (Patatin-related phospholipase A IIIbeta) (pPLAIIIb) (Phospholipase A IIIA) (AtPLAIIIA) DISRUPTION PHENOTYPE: Increased length of leaves, petioles, hypocotyls, primary roots and root hairs. Changes in lipid levels and composition. {ECO:0000269|PubMed:21447788}. FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Hydrolyzes phospholipids as well as galactolipids. May play a role in disease resistance (By similarity). {ECO:0000250}.,FUNCTION: Possesses non-specific lipolytic acyl hydrolase (LAH) activity. Catalyzes the hydrolysis of the galactolipids monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG), and the phoshpolipids phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidic acid (PA), phosphatidylserine (PS). Favors the release of fatty acid at the sn-2 position for PC. Possesses acyl-CoA thioesterase activity. Negatively affects disease resistance to the necrotic fungal pathogen Botrytis cinerea and the avirulent bacteria Pseudomonas syringae by promoting cell death and reducing the efficiency of the hypersensitive response, respectively. However, PLP2 contributes to resistance to cucumber mosaic virus (CMV), an obligate parasite inducing hypersensitive response. May negatively regulate oxylipin production, possibly via participating in membrane repair that includes removal of oxidatively modified lipids. Enzymatic products of PLP2 may influence cellulose content and cell elongation. {ECO:0000269|PubMed:21447788}. MISCELLANEOUS: Plants over-expressing PLP7 have decreased cellulose content and mechanical strength. {ECO:0000305|PubMed:21447788}. ARA:GQT-1488-MONOMER; 3.1.1.- 56961,53100 Patatin-like protein 8 (AtPLP8) (EC 3.1.1.-) (Patatin-related phospholipase A IIIgamma) (pPLAIIIg) (Phospholipase A IVD) (AtPLAIVD),Patatin-like protein 7 (AtPLP7) (EC 3.1.1.-) (Patatin-related phospholipase A IIIbeta) (pPLAIIIb) (Phospholipase A IIIA) (AtPLAIIIA) hydrolase activity [GO:0016787]; defense response [GO:0006952]; lipid catabolic process [GO:0016042],plasma membrane [GO:0005886]; acyl-CoA hydrolase activity [GO:0047617]; phospholipase activity [GO:0004620]; galactolipid metabolic process [GO:0019374]; lipid catabolic process [GO:0016042]; phospholipid metabolic process [GO:0006644]; regulation of growth [GO:0040008]; response to other organism [GO:0051707] TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:21447788}.,TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21447788}. locus:2123894;,locus:2082702; AT4G29800,AT3G54950 Patatin-like phospholipase Os03g0254400 protein A0A0P0VVJ7 A0A0P0VVJ7_ORYSJ Os03g0254400 OSNPB_030254400 ENOG411E7MS ZFP11 Q9SLB8,A0A1P8B0T0 ZFP11_ARATH,A0A1P8B0T0_ARATH Zinc finger protein 11 (AtZFP11),Zinc finger protein 11 FUNCTION: Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. MISCELLANEOUS: Plants over-expressing ZFP11 show are dwarf, have abnormal leaf morphology, flower early and most of the plants are sterile. The stunting phenotype is due to reduced cell size and cell numbers. {ECO:0000269|Ref.4}. 24353,27227 Zinc finger protein 11 (AtZFP11),Zinc finger protein 11 nucleus [GO:0005634]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of growth [GO:0040008]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|Ref.4}. locus:2053796; AT2G42410 zinc finger protein 11 NA NA NA NA NA NA NA ENOG411E7MR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E7MQ Q940J7 Q940J7_ARATH Transmembrane protein (Uncharacterized protein At4g40045) 15396 Transmembrane protein (Uncharacterized protein At4g40045) integral component of membrane [GO:0016021] locus:505006574; AT4G40045 NA NA NA NA NA NA NA NA ENOG411E7MV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7MT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0835150 protein) (cDNA, clone: J100062B07, full insert sequence) Q75LJ0 Q75LJ0_ORYSJ LOC_Os03g61900 Os03g0835150 OsJ_13263 OSJNBa0096I06.17 OSNPB_030835150 ENOG411E7MZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0549400 protein (cDNA clone:002-175-G09, full insert sequence) Q0JB90 Q0JB90_ORYSJ Os04g0549400 Os04g0549400 OSNPB_040549400 ENOG411E7MY Q9C6Z9 Q9C6Z9_ARATH Cotton fiber protein (Uncharacterized protein T2H7.2) 32712 Cotton fiber protein (Uncharacterized protein T2H7.2) integral component of membrane [GO:0016021] locus:2202482; AT1G30190 NA NA NA NA NA NA NA NA ENOG411E7MX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0604600 protein (cDNA clone:J023016C19, full insert sequence) Q69X17 Q69X17_ORYSJ Os06g0604600 OsJ_21909 OSNPB_060604600 P0481H08.9 ENOG411E7MA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Predicted coiled-coil domain-containing protein (DUF2360) Os04g0304000 protein Q0JEA9 Q0JEA9_ORYSJ Os04g0304000 Os04g0304000 OSNPB_040304000 ENOG411E7MG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) NA NA NA NA NA NA NA ENOG411E7ME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0308700 protein A0A0P0VWK3 A0A0P0VWK3_ORYSJ Os03g0308700 OSNPB_030308700 ENOG411E7MD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0380800 protein (cDNA, clone: J075004H10, full insert sequence) B7F945 B7F945_ORYSJ Os04g0380800 OSNPB_040380800 ENOG411E7MK ATL18 Q9SZL4 ATL18_ARATH RING-H2 finger protein ATL18 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL18) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 16255 RING-H2 finger protein ATL18 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL18) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2120963; AT4G38140 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E7MH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA polymerase delta subunit 4 Os08g0163300 protein Q84S51 Q84S51_ORYSJ OJ9990_A01.115 Os08g0163300 OSNPB_080163300 ENOG411E7M2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0646100 protein (cDNA clone:001-108-C03, full insert sequence) Q67W63 Q67W63_ORYSJ Os06g0646100 Os06g0646100 OJ1226_A12.9 OsJ_22150 OSNPB_060646100 P0017B12.35 ENOG411E7M0 HON4 Q9LSK7,A0A1I9LM89 Q9LSK7_ARATH,A0A1I9LM89_ARATH At3g18035 (Linker histone protein, putative) (Winged-helix DNA-binding transcription factor family protein),Winged-helix DNA-binding transcription factor family protein 51524,41555 At3g18035 (Linker histone protein, putative) (Winged-helix DNA-binding transcription factor family protein),Winged-helix DNA-binding transcription factor family protein nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]; nucleosome assembly [GO:0006334] locus:2087674; AT3G18035 linker histone H1 and H5 family NA NA NA NA NA NA NA ENOG411E7M5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7M9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Arabinogalactan peptide Os02g0264800 protein (cDNA clone:J023028A06, full insert sequence) Q6ETY5 Q6ETY5_ORYSJ Os02g0264800 Os02g0264800 OsJ_06165 OSNPB_020264800 P0006C08.11 ENOG411E7M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PEC family metallothionein Class II metallothionein-like protein 1A (OsMT-II-1a) (OsMT4) Q109B0 MT21A_ORYSJ MT21A Os10g0542100 LOC_Os10g39610 OSJNBb0015I11.8 FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals. {ECO:0000305}. ENOG411EMKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger ZZ type NA NA NA NA NA NA NA ENOG411EMKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA growth inhibition and differentiation-related protein NA NA NA NA NA NA NA ENOG411EMK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: glutamine amidotransferase NA NA NA NA NA NA NA ENOG411EMK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EMK4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein Zinc finger CCCH domain-containing protein 24 (OsC3H24) Q10EL1 C3H24_ORYSJ Os03g0698800 LOC_Os03g49170 OSJNBb0017F17.19 ENOG411EMK3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411E4DK AFP1 Q9LQ98 AFP1_ARATH Ninja-family protein AFP1 (ABI five-binding protein 1) (ABI5-binding protein 1) DISRUPTION PHENOTYPE: Exhibits slight hypersensitivity to abscisic acid (ABA), salt and osmotic stress. {ECO:0000269|PubMed:12569131, ECO:0000269|PubMed:18484180}. FUNCTION: Acts as a negative regulator of abscisic acid (ABA) response during germination through the ubiquitin-mediated proteolysis of ABI5/DPBF1. {ECO:0000269|PubMed:12569131}. 37531 Ninja-family protein AFP1 (ABI five-binding protein 1) (ABI5-binding protein 1) nucleus [GO:0005634]; abscisic acid-activated signaling pathway [GO:0009738] DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:12569131}. locus:2026413; AT1G69260 Protein of unknown function (DUF1675) NA NA NA NA NA NA NA ENOG411E4DH ERF13 Q8L9K1 ERF99_ARATH Ethylene-responsive transcription factor 13 (AtERF13) (Ethylene-responsive element-binding factor 13) (EREBP-13) FUNCTION: Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. 25353 Ethylene-responsive transcription factor 13 (AtERF13) (Ethylene-responsive element-binding factor 13) (EREBP-13) nucleus [GO:0005634]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}. locus:2055002; AT2G44840 Transcription factor NA NA NA NA NA NA NA ENOG411EMRB CMTA4 Q9FYG2 CMTA4_ARATH Calmodulin-binding transcription activator 4 (Ethylene-induced calmodulin-binding protein 4) (AtFIN21) (EICBP4) (Ethylene-induced calmodulin-binding protein d) (EICBP.d) (Signal-responsive protein 5) FUNCTION: Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. 113064 Calmodulin-binding transcription activator 4 (Ethylene-induced calmodulin-binding protein 4) (AtFIN21) (EICBP4) (Ethylene-induced calmodulin-binding protein d) (EICBP.d) (Signal-responsive protein 5) cytosol [GO:0005829]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; sequence-specific DNA binding [GO:0043565]; transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001077]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. locus:2019534; AT1G67310 calmodulin-binding transcription NA NA NA NA NA NA NA ENOG411EMRC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EMRF CHR23 A0A1P8BAR5 A0A1P8BAR5_ARATH Homeotic protein regulator 91902 Homeotic protein regulator ATP binding [GO:0005524]; histone binding [GO:0042393] transcription regulatory protein SNF2-like Os05g0144300 protein (Putative transcriptional regulator) Q60EX7 Q60EX7_ORYSJ Os05g0144300 OJ1607_F09.9 OSNPB_050144300 ENOG411EMRG PYRB P49077 PYRB_ARATH Aspartate carbamoyltransferase, chloroplastic (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3. ARA:AT3G20330-MONOMER;MetaCyc:AT3G20330-MONOMER; 2.1.3.2 43167 Aspartate carbamoyltransferase, chloroplastic (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; amino acid binding [GO:0016597]; aspartate carbamoyltransferase activity [GO:0004070]; 'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; 'de novo' UMP biosynthetic process [GO:0044205]; cellular amino acid metabolic process [GO:0006520]; cellular response to phosphate starvation [GO:0016036] locus:2092369; AT3G20330 Aspartate carbamoyltransferase Aspartate carbamoyltransferase, chloroplastic (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) Q9LD61 PYRB_ORYSJ PYRB Os08g0248800 LOC_Os08g15030 OsJ_26609 OSJNBa0012K14.1 OSJNBb0003H03.24 ENOG411EMR9 NIG Q8W4K6 Q8W4K6_ARATH At4g13350 (NSP (Nuclear shuttle protein)-interacting GTPase) (Uncharacterized protein At4g13350; T9E8.90) ARA:AT4G13350-MONOMER; R-ATH-8856825; 65027 At4g13350 (NSP (Nuclear shuttle protein)-interacting GTPase) (Uncharacterized protein At4g13350; T9E8.90) cytoplasm [GO:0005737]; cytosol [GO:0005829]; GTP binding [GO:0005525]; GTPase activator activity [GO:0005096]; GTPase activity [GO:0003924]; metal ion binding [GO:0046872]; nucleocytoplasmic transport [GO:0006913]; response to virus [GO:0009615] locus:2142115; AT4G13350 ArfGap NA NA NA NA NA NA NA ENOG411EMR2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO NA NA NA NA NA NA NA ENOG411E13Z NPF2.8 Q3E8X3,A0A1P8BHI2 PTR52_ARATH,A0A1P8BHI2_ARATH Protein NRT1/ PTR FAMILY 2.8 (AtNPF2.8),Major facilitator superfamily protein R-ATH-427975;R-ATH-6798695; 61600,61771 Protein NRT1/ PTR FAMILY 2.8 (AtNPF2.8),Major facilitator superfamily protein integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; pollen tube growth [GO:0009860],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:17481610}. locus:2147499; AT5G28470 transporter NA NA NA NA NA NA NA ENOG411EEB0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EEB1 Q9MAP0,A0A1P8AUD1,A0A1P8AUE2 Q9MAP0_ARATH,A0A1P8AUD1_ARATH,A0A1P8AUE2_ARATH At1g33030 (At1g33030/F9L11_18) (CDS) (O-methyltransferase family protein),O-methyltransferase family protein ARA:AT1G33030-MONOMER; R-ATH-209931; 38968,28596,29577 At1g33030 (At1g33030/F9L11_18) (CDS) (O-methyltransferase family protein),O-methyltransferase family protein cytosol [GO:0005829]; O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; aromatic compound biosynthetic process [GO:0019438],O-methyltransferase activity [GO:0008171]; protein dimerization activity [GO:0046983] locus:2038026; AT1G33030 Dimerisation domain NA NA NA NA NA NA NA ENOG411EEB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MORN NA NA NA NA NA NA NA ENOG411EEB6 T31B5_170 Q9LYS0,Q8GZ29,Q9LYU1,F4K2J6,F4K2J2 Q9LYS0_ARATH,Q8GZ29_ARATH,Q9LYU1_ARATH,F4K2J6_ARATH,F4K2J2_ARATH Auxin reponsive-like protein (Auxin-responsive GH3 family protein),At5g13370 (Auxin-responsive GH3 family protein) (Putative auxin responsive protein),Auxin-responsive GH3 family protein (Auxin-responsive-like protein),Auxin-responsive GH3 family protein ARA:GQT-286-MONOMER;,ARA:GQT-1752-MONOMER; R-ATH-6798695; 66948,66979,66375,70275,75873 Auxin reponsive-like protein (Auxin-responsive GH3 family protein),At5g13370 (Auxin-responsive GH3 family protein) (Putative auxin responsive protein),Auxin-responsive GH3 family protein (Auxin-responsive-like protein),Auxin-responsive GH3 family protein cytosol [GO:0005829] locus:2181630;,locus:2183881;,locus:2181640;,locus:2181620; AT5G13360,AT5G13370,AT5G13350,AT5G13380 Auxin-responsive GH3 family protein NA NA NA NA NA NA NA ENOG411EEB7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EEB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EEBA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEBC Q9C7F0 Q9C7F0_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxidoreductase, putative) ARA:AT1G28030-MONOMER; 36530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Oxidoreductase, putative) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2010474; AT1G28030 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EEBD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA HMG (high mobility group) box NA NA NA NA NA NA NA ENOG411EEBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411EEBJ Q6NKN8,A0A1P8AXV4,A0A1P8AXX9 FB132_ARATH,A0A1P8AXV4_ARATH,A0A1P8AXX9_ARATH F-box protein At2g41170,F-box family protein 43484,47183,34843 F-box protein At2g41170,F-box family protein integral component of membrane [GO:0016021] locus:2063167; AT2G41170 FBOX NA NA NA NA NA NA NA ENOG411EEBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Two-component response regulator ORR33 (OsRRA19) Q6ZC03 ORR33_ORYSJ RR33 Os08g0458600 LOC_Os08g35670 P0493A04.24 DISRUPTION PHENOTYPE: Low fertility. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. ENOG411EEBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase NA NA NA NA NA NA NA ENOG411EEBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retinoblastoma binding protein 6 NA NA NA NA NA NA NA ENOG411EEBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative methyltransferase NA NA NA NA NA NA NA ENOG411EEBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEBS Q9LK24 FB327_ARATH F-box protein At3g27290 43125 F-box protein At3g27290 locus:2086548; AT3G27290 NA NA NA NA NA NA NA NA ENOG411EEBT MQK4.14,YUP8H12R.39 Q9FFE4,Q9MAP9,F4IDH0 Q9FFE4_ARATH,Q9MAP9_ARATH,F4IDH0_ARATH HXXXD-type acyl-transferase family protein (Similarity to N-hydroxycinnamoyl/benzoyltransferase),HXXXD-type acyl-transferase family protein (Highly similar to YUP8H12R.39),HXXXD-type acyl-transferase family protein ARA:AT1G32910-MONOMER; 53819,52086,50914 HXXXD-type acyl-transferase family protein (Similarity to N-hydroxycinnamoyl/benzoyltransferase),HXXXD-type acyl-transferase family protein (Highly similar to YUP8H12R.39),HXXXD-type acyl-transferase family protein transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747] locus:2171337;,locus:2037965;,locus:2207410; AT5G16410,AT1G32910,AT1G78990 Transferase family NA NA NA NA NA NA NA ENOG411EEBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA S_TKc NA NA NA NA NA NA NA ENOG411EEBV B7ZWR9 B7ZWR9_ARATH Actin cytoskeleton-regulatory complex pan-like protein (At3g20350) 77095 Actin cytoskeleton-regulatory complex pan-like protein (At3g20350) plasma membrane [GO:0005886] locus:2092319; AT3G20350 Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411EEBW HMA1 Q9M3H5 HMA1_ARATH Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 1) mutants are hypersensitive to Zn(II),In chloroplasts from hma1 mutant lines Cu content was halved with respect to chloroplasts from WT. Under high light (above 280 µmol.m-2.s-1) hma1 mutants exhibited a strong photosensitivity phenotype leading to white leaves with restricted green regions. Variegated leaves under high light-N. Rolland-2006 FUNCTION: Involved in cadmium/zinc transport. {ECO:0000305}. ARA:AT4G37270-MONOMER; 3.6.3.3; 3.6.3.5 88189 Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; cadmium-exporting ATPase activity [GO:0008551]; metal ion binding [GO:0046872]; zinc-exporting ATPase activity [GO:0016463]; zinc-transporting ATPase activity [GO:0015633]; cellular copper ion homeostasis [GO:0006878]; response to light intensity [GO:0009642]; zinc ion homeostasis [GO:0055069] locus:2115020; AT4G37270 E1-E2 ATPase NA NA NA NA NA NA NA ENOG411EEBX UMAMIT27,UMAMIT29 Q5XEZ0,Q9M131,F4I8W6,Q500Z4,A0A1P8AM13,A0A1P8B3G6,A0A1P8AM19 WTR1_ARATH,WTR28_ARATH,WTR4_ARATH,WTR3_ARATH,A0A1P8AM13_ARATH,A0A1P8B3G6_ARATH,A0A1P8AM19_ARATH WAT1-related protein At1g01070,WAT1-related protein At4g01430,WAT1-related protein At1g11460,WAT1-related protein At1g11450,WAT1-related protein 39810,40458,36976,38635,33942,25341,35013 WAT1-related protein At1g01070,WAT1-related protein At4g01430,WAT1-related protein At1g11460,WAT1-related protein At1g11450,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; L-glutamine transmembrane transporter activity [GO:0015186]; amino acid transmembrane export [GO:0044746]; seed development [GO:0048316],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2200990;,locus:2125167;,locus:2200041;,locus:2200056; AT1G01070,AT4G01430,AT1G11460,AT1G11450 Nodulin MtN21 family protein NA NA NA NA NA NA NA ENOG411EEBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GCC2 and GCC3 NA NA NA NA NA NA NA ENOG411EEBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: f-box family NA NA NA NA NA NA NA ENOG411DWYM CTN F4I2J8,F4IP15,F4IP14 CATIN_ARATH,F4IP15_ARATH,F4IP14_ARATH Cactin,Mid region of cactin DISRUPTION PHENOTYPE: Embryo lethality when homozygous. {ECO:0000269|PubMed:23454656}. FUNCTION: Required for embryogenesis. May be involved with the spliceosome. {ECO:0000269|PubMed:23454656}. 83434,11472,12578 Cactin,Mid region of cactin nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; embryo development ending in seed dormancy [GO:0009793]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] locus:2024182;,locus:5019474736; AT1G03910,AT2G36815 Cactus-binding C-terminus of cactin protein Os03g0800100 protein A0A0P0W476 A0A0P0W476_ORYSJ Os03g0800100 OSNPB_030800100 ENOG411DWYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cation_ATPase_N NA NA NA NA NA NA NA ENOG411DVF8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADP-dependent alkenal double bond reductase Os06g0602900 protein (Putative allyl alcohol dehydrogenase) (cDNA, clone: J090097J02, full insert sequence) Q69XJ5 Q69XJ5_ORYSJ Os06g0602900 OSNPB_060602900 P0486H12.29 ENOG411DVF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein NA NA NA NA NA NA NA ENOG411DVF0 TPX2 F4I2H7,Q9FKW1 TPX2_ARATH,Q9FKW1_ARATH Protein TPX2 (AtTPX2) (Targeting protein for XKLP2),Similarity to unknown protein (TPX2 (Targeting protein for Xklp2) protein family) DISRUPTION PHENOTYPE: Lethal when homozygous. {ECO:0000269|PubMed:18941054}. FUNCTION: Regulates prospindle assembly during late prophase and at the onset of mitosis, before nuclear envelope breakdown (NEB). Is exported from the nucleus shortly before NEB and organized into two polar crescents. After NEB, is progressively associated with the forming spindle. Probably mediates AUR1 activation and localization to spindle microtubules. Has a microtubule binding capability and is able to trigger microtubule assembly induced by RanGTP in a heterologous system. Not involved in phragmoplast assembly, nuclear envelope reformation, and cortical microtubule assembly at the onset of G1 (PubMed:18941054). Involved in the formation of specific nuclear and perinuclear microtubular arrays in the nuclei of acentrosomal plant cells. Fungi and plants have acentrosomal microtubule arrays because they lack centrosomes. They use other microtubule organizing center (MTOC) structures to organize their microtubules. May function through interaction with importin (PubMed:24006426). {ECO:0000269|PubMed:18941054, ECO:0000269|PubMed:24006426}. MISCELLANEOUS: TPX2 over-expressing cells display formation of nuclear and perinuclear microtubular arrays which are not specific for the transition to mitosis and occur independently of AUR1 kinase. {ECO:0000269|PubMed:24006426}. 90083,35889 Protein TPX2 (AtTPX2) (Targeting protein for XKLP2),Similarity to unknown protein (TPX2 (Targeting protein for Xklp2) protein family) chloroplast envelope [GO:0009941]; microtubule [GO:0005874]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; spindle [GO:0005819]; microtubule binding [GO:0008017]; activation of protein kinase activity [GO:0032147]; cell division [GO:0051301]; mitotic cell cycle [GO:0000278]; mitotic spindle assembly [GO:0090307]; regulation of mitotic spindle organization [GO:0060236]; spindle assembly [GO:0051225],microtubule [GO:0005874]; spindle [GO:0005819]; activation of protein kinase activity [GO:0032147]; regulation of mitotic spindle organization [GO:0060236] locus:2024132;,locus:2158695; AT1G03780,AT5G44270 Cell cycle regulated microtubule associated protein Os07g0507200 protein,Os02g0326500 protein (Fragment) Q7EZ30,Q0E1L8 Q7EZ30_ORYSJ,Q0E1L8_ORYSJ OSJNBb0062D12.128 Os07g0507200 OSNPB_070507200,Os02g0326500 Os02g0326500 OSNPB_020326500 ENOG411DVF1 Q8H1G4,B9DFI3,Q9SZE9,A0A1P8B5Z2,A0A1P8B5Z0,A0A1P8B5Z4,A0A1P8B392,F4JS39 Q8H1G4_ARATH,B9DFI3_ARATH,Q9SZE9_ARATH,A0A1P8B5Z2_ARATH,A0A1P8B5Z0_ARATH,A0A1P8B5Z4_ARATH,A0A1P8B392_ARATH,F4JS39_ARATH Acetamidase/Formamidase family protein (Putative formamidase),AT4G37550 protein (Acetamidase/Formamidase family protein),Acetamidase/Formamidase family protein (Formamidase-like protein) (EC 3.5.1.49),Acetamidase/Formamidase family protein ARA:AT4G37560-MONOMER;,ARA:AT4G37550-MONOMER; 3.5.1.49 49698,49669,47566,35235,49958,33151,45427,42123 Acetamidase/Formamidase family protein (Putative formamidase),AT4G37550 protein (Acetamidase/Formamidase family protein),Acetamidase/Formamidase family protein (Formamidase-like protein) (EC 3.5.1.49),Acetamidase/Formamidase family protein hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [GO:0016811],vacuole [GO:0005773]; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [GO:0016811],formamidase activity [GO:0004328] locus:2120101;,locus:2120086; AT4G37560,AT4G37550 K01455 formamidase EC 3.5.1.49 NA NA NA NA NA NA NA ENOG411DVF2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os04g0619000 protein A0A0P0WF82 A0A0P0WF82_ORYSJ Os04g0619000 OSNPB_040619000 ENOG411DVF3 OTU12 Q9SGA5 Q9SGA5_ARATH AT3G02070 protein (At3g02070) (Cysteine proteinases superfamily protein) (F1C9.14 protein) (OTU-containing deubiquitinating enzyme OTU12) 25571 AT3G02070 protein (At3g02070) (Cysteine proteinases superfamily protein) (F1C9.14 protein) (OTU-containing deubiquitinating enzyme OTU12) locus:2078648; AT3G02070 OTU domain-containing protein DDB_G0284757-like NA NA NA NA NA NA NA ENOG411DVF4 Q9ZQ51,A0A1P8B326,A0A1P8B357,F4IJK8 Q9ZQ51_ARATH,A0A1P8B326_ARATH,A0A1P8B357_ARATH,F4IJK8_ARATH Rhamnogalacturonate lyase family protein (Uncharacterized protein At2g22620),Rhamnogalacturonate lyase family protein 77618,54547,64067,68233 Rhamnogalacturonate lyase family protein (Uncharacterized protein At2g22620),Rhamnogalacturonate lyase family protein carbohydrate binding [GO:0030246]; lyase activity [GO:0016829]; carbohydrate metabolic process [GO:0005975] locus:2066040; AT2G22620 Rhamnogalacturonate lyase family NA NA NA NA NA NA NA ENOG411DVF5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lysosomal Pro-X Os06g0647400 protein (Putative prolylcarboxypeptidase isoform 1) (cDNA clone:J033124L23, full insert sequence) Q67WZ5 Q67WZ5_ORYSJ Os06g0647400 Os06g0647400 OSJNBa0062J02.12 OSNPB_060647400 ENOG411DVF6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0403000 protein (cDNA clone:002-152-G11, full insert sequence),Os09g0403000 protein (Fragment) Q69MV7,A0A0N7KQR9 Q69MV7_ORYSJ,A0A0N7KQR9_ORYSJ Os09g0403000 OSJNBb0014M19.23-2 OSNPB_090403000,Os09g0403000 OSNPB_090403000 ENOG411DVF7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CPuORF35 - conserved peptide uORF-containing transcript expressed Os03g0391700 protein (Fragment) A0A0P0VZ61 A0A0P0VZ61_ORYSJ Os03g0391700 OSNPB_030391700 ENOG411DVFX DCL Q9C642,F4HRD2 DCL_ARATH,F4HRD2_ARATH Protein DCL homolog, chloroplastic (AtDCL),DCL protein (DUF3223) FUNCTION: Required for normal plastid function and plant development. Required for correct plastid ribosome assembly. Required for processing and maturation of 4.5S rRNA. {ECO:0000269|PubMed:15197595}. 25448,25577 Protein DCL homolog, chloroplastic (AtDCL),DCL protein (DUF3223) chloroplast [GO:0009507] TISSUE SPECIFICITY: Expressed in leaves, stems, flowers and siliques. {ECO:0000269|PubMed:15197595}. locus:504956149; AT1G45230 Protein of unknown function (DUF3223) Os02g0766000 protein (cDNA clone:J013091G15, full insert sequence),Os02g0766000 protein (Fragment) Q6Z314,Q0DXA1 Q6Z314_ORYSJ,Q0DXA1_ORYSJ OJ1004_A11.16-1 Os02g0766000 P0539D10.35-1 OSNPB_020766000,Os02g0766000 Os02g0766000 OSNPB_020766000 ENOG411DVFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF641) Os01g0823700 protein (cDNA clone:J013110B20, full insert sequence) Q0JI52 Q0JI52_ORYSJ Os01g0823700 Os01g0823700 OsJ_03911 OSNPB_010823700 ENOG411DVFZ Q9LIH2,F4IWB6 Q9LIH2_ARATH,F4IWB6_ARATH Translocation protein-like protein (Uncharacterized protein At3g20920),Translocation protein-like protein 41944,41816 Translocation protein-like protein (Uncharacterized protein At3g20920),Translocation protein-like protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; protein transporter activity [GO:0008565],integral component of membrane [GO:0016021]; protein transporter activity [GO:0008565] locus:2088796; AT3G20920 translocation Os02g0435000 protein (Translocation protein-related-like) (cDNA clone:001-034-C06, full insert sequence) (cDNA clone:J033093B11, full insert sequence) Q67U13 Q67U13_ORYSJ Os02g0435000 Os02g0435000 OJ1126_B05.6 OSJNBa0065F08.27 OSNPB_020435000 ENOG411DVFQ A0A1P8AMX7,F4HRB5 A0A1P8AMX7_ARATH,F4HRB5_ARATH Remorin family protein 60179,60914 Remorin family protein plasma membrane [GO:0005886] locus:1005716683; AT1G45207 remorin C-terminal domain containing protein Os08g0471800 protein (cDNA clone:001-116-C04, full insert sequence),Os09g0456100 protein (Remorin protein-like),Os02g0767000 protein (Fragment),Os09g0456100 protein (Fragment) Q6Z9R1,Q67TQ6,A0A0P0VQD6,A0A0P0XNH0 Q6Z9R1_ORYSJ,Q67TQ6_ORYSJ,A0A0P0VQD6_ORYSJ,A0A0P0XNH0_ORYSJ Os08g0471800 Os08g0471800 OSNPB_080471800 P0013B04.3 P0461F06.38,Os09g0456100 Os09g0456100 B1342C04.25 OSNPB_090456100 P0025H07.44,Os02g0767000 OSNPB_020767000,Os09g0456100 OSNPB_090456100 ENOG411DVFR Q8GXP4 Y2991_ARATH Uncharacterized protein At2g39910 49747 Uncharacterized protein At2g39910 locus:2061186; AT2G39910 Protein of unknown function (DUF2454) Os06g0694100 protein (cDNA clone:J033051C12, full insert sequence),Os06g0694100 protein B7EME2,Q5Z8K1 B7EME2_ORYSJ,Q5Z8K1_ORYSJ Os06g0694100 OSNPB_060694100,P0550B04.24-1 Os06g0694100 OsJ_22474 OSNPB_060694100 ENOG411DVFS RPT4B,RPT4A Q9MAK9,Q9SEI3,B3H533 PS10B_ARATH,PS10A_ARATH,B3H533_ARATH 26S proteasome regulatory subunit S10B homolog B (26S proteasome AAA-ATPase subunit RPT4b) (26S proteasome subunit S10B homolog B) (Regulatory particle triple-A ATPase subunit 4b),26S proteasome regulatory subunit 10B homolog A (26S proteasome AAA-ATPase subunit RPT4a) (26S proteasome subunit 10B homolog A) (Regulatory particle triple-A ATPase subunit 4a),AAA-type ATPase family protein FUNCTION: The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 44756,44817,37572 26S proteasome regulatory subunit S10B homolog B (26S proteasome AAA-ATPase subunit RPT4b) (26S proteasome subunit S10B homolog B) (Regulatory particle triple-A ATPase subunit 4b),26S proteasome regulatory subunit 10B homolog A (26S proteasome AAA-ATPase subunit RPT4a) (26S proteasome subunit 10B homolog A) (Regulatory particle triple-A ATPase subunit 4a),AAA-type ATPase family protein cell wall [GO:0005618]; cytosolic proteasome complex [GO:0031597]; membrane [GO:0016020]; nuclear proteasome complex [GO:0031595]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; proteasome complex [GO:0000502]; proteasome regulatory particle, base subcomplex [GO:0008540]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],cell wall [GO:0005618]; cytosol [GO:0005829]; cytosolic proteasome complex [GO:0031597]; nuclear proteasome complex [GO:0031595]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [GO:0045899]; ubiquitin-dependent ERAD pathway [GO:0030433],ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402] locus:2028200;,locus:2159996; AT1G45000,AT5G43010 26S protease regulatory subunit Os06g0607800 protein (Putative 26S proteasome regulatory particle triple-A ATPase subunit4) (cDNA clone:001-044-C12, full insert sequence) (cDNA clone:J013074G13, full insert sequence),26S proteasome regulatory particle triple-A ATPase subunit4 (Os02g0199900 protein),Os02g0199900 protein,Os02g0199900 protein (Fragment) Q69Q32,Q9FXT8,A0A0P0VG21,A0A0N7KEV9 Q69Q32_ORYSJ,Q9FXT8_ORYSJ,A0A0P0VG21_ORYSJ,A0A0N7KEV9_ORYSJ Os06g0607800 Os06g0607800 OsJ_21925 OSNPB_060607800 P0029C06.33 P0556B08.9,OsRPT4 P0026H03.35-1 P0419A09.6-1 Os02g0199900 OsJ_05786 OSNPB_020199900,Os02g0199900 OSNPB_020199900 ENOG411DVFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411DVFU Q9SR72,A0A1I9LSI8 GL32_ARATH,A0A1I9LSI8_ARATH Germin-like protein subfamily 3 member 2,RmlC-like cupins superfamily protein FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. 24779,33256 Germin-like protein subfamily 3 member 2,RmlC-like cupins superfamily protein apoplast [GO:0048046]; cell wall [GO:0005618]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735],extracellular region [GO:0005576]; manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735] locus:2100133; AT3G10080 germin-like protein Germin-like protein 2-4 Q6ESF0 GL24_ORYSJ Os02g0532500 LOC_Os02g32980 P0605D08.24 FUNCTION: May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved. ENOG411DVFV MCM23.5 Q9FJG3 Q9FJG3_ARATH C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase-like protein) 117931 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (Phosphoribosylanthranilate transferase-like protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2161523; AT5G17980 C2 domain-containing protein Os07g0165100 protein (Putative anthranilate phosphoribosyltransferase) Q7XID7 Q7XID7_ORYSJ P0039H02.112 Os07g0165100 OSNPB_070165100 ENOG411DVFW NUDT14 Q9SZ63 NUD14_ARATH Nudix hydrolase 14, chloroplastic (AtNUDT14) (EC 3.6.1.21) (ADP-sugar diphosphatase) (AtASPP) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18815383}. FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use ADP-glucose, ADP-mannose and ADP-ribose as substrates. Regulates the intracellular ADP-glucose levels linked to starch biosynthesis. {ECO:0000269|PubMed:16774931}. ARA:AT4G11980-MONOMER; 3.6.1.21 34254 Nudix hydrolase 14, chloroplastic (AtNUDT14) (EC 3.6.1.21) (ADP-sugar diphosphatase) (AtASPP) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ADP-glucose pyrophosphohydrolase activity [GO:0080042]; ADP-ribose pyrophosphohydrolase activity [GO:0080041]; ADP-sugar diphosphatase activity [GO:0019144]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and inflorescences. {ECO:0000269|PubMed:18815383}. locus:2118061; AT4G11980 Nudix hydrolase MutT/nudix protein-like (Os06g0129700 protein) Q9SNS9 Q9SNS9_ORYSJ P0538C01.23 Os06g0129700 OSNPB_060129700 ENOG411DVFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of Vps4 activity in the MVB pathway Os06g0687000 protein A0A0P0X040 A0A0P0X040_ORYSJ Os06g0687000 OSNPB_060687000 ENOG411DVFI UFO Q39090 UFO_ARATH Protein UNUSUAL FLORAL ORGANS (F-box only protein 1) (AtFBX1) Mutants produce less than one petal per flower on average although most basal flowers can have more.,Petals are usually missing in ufo-11 flowers or are sometimes replaced by filaments or petal/stamen mosaic organs. ufo-11 flowers have fewer second-whorl organs compared with rbe-3 mutants and also sometimes produce mosaic petaloid stamens in the third whorl.,Weak allele specifically affecting petal development.,Double-mutant flowers have a phenotype that is similar to ufo-11 flowers.,Double mutant has the same phenotype as the ufo-2 single mutant. There is no increase in the number of filaments and/or staminoid organs in the double mutant as compared with ufo-2. Homeotic floral transformations-W. Cosby-1995 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Considered as a meristem identity factor required for normal growth of the young floral meristem. Acts together with LEAFY to positively regulate the B class floral homeotic genes APETALA3 and PISTILLATA. In this way, operates as a region-specific regulator for petal and stamen development. Alternatively, may play a role as a negative regulator of the C class floral homeotic genes. Interacts together with the SKP1-like protein ASK1 to form a ubiquitin E3 ligase complex and could indirectly promote the ubiquitination and degradation of specific proteins controlling the floral primordia development like repressors of B class floral homeotic genes. {ECO:0000250, ECO:0000269|PubMed:10607296, ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9016705}. MISCELLANEOUS: Mutations in the UFO gene result in the formation of unusual floral organs. PATHWAY: Protein modification; protein ubiquitination. 49047 Protein UNUSUAL FLORAL ORGANS (F-box only protein 1) (AtFBX1) nucleus [GO:0005634]; transcription factor binding [GO:0008134]; ubiquitin-protein transferase activity [GO:0004842]; cell differentiation [GO:0030154]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected early throughout the shoot apical meristem, but not in the emerging leaf primordia. Restricted later to the junction between sepal and petal primordia. {ECO:0000269|PubMed:9016705}. locus:2015766; AT1G30950 protein UNUSUAL FLORAL Os06g0665400 protein (Panicle organization related protein) (Putative stamina pistilloidia),Os06g0550398 protein Q655Y0,A0A0N7KM94 Q655Y0_ORYSJ,A0A0N7KM94_ORYSJ Os06g0665400 APO1 OSNPB_060665400 P0473H04.19,Os06g0550398 OSNPB_060550398 ENOG411DVFJ HDA15 Q8GXJ1,A0A1I9LNM8,F4J8S1,A0A1I9LNM9,F4JKT1 HDA15_ARATH,A0A1I9LNM8_ARATH,F4J8S1_ARATH,A0A1I9LNM9_ARATH,F4JKT1_ARATH Histone deacetylase 15 (EC 3.5.1.98),Histone deacetylase (EC 3.5.1.98),Histone deacetylase FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250}. R-ATH-3371511;R-ATH-5617833; 3.5.1.98 60020,55733,60723,48557,8188 Histone deacetylase 15 (EC 3.5.1.98),Histone deacetylase (EC 3.5.1.98),Histone deacetylase nucleus [GO:0005634]; metal ion binding [GO:0046872]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; NAD-dependent histone deacetylase activity (H3-K14 specific) [GO:0032041]; DNA mediated transformation [GO:0009294]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2095087;,locus:4515103370; AT3G18520,AT4G09784 Histone deacetylase Histone deacetylase (EC 3.5.1.98) Q0D8F2 Q0D8F2_ORYSJ Os07g0164100 Os07g0164100 OsJ_23197 OSNPB_070164100 ENOG411DVFM F4HY10,F4HY11 F4HY10_ARATH,F4HY11_ARATH Exostosin family protein (Glycosyltransferase),Exostosin family protein 52836,46694 Exostosin family protein (Glycosyltransferase),Exostosin family protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; transferase activity [GO:0016740] locus:2027002; AT1G21480 Exostosin family NA NA NA NA NA NA NA ENOG411DVFN STP13 Q94AZ2 STP13_ARATH Sugar transport protein 13 (Hexose transporter 13) (Multicopy suppressor of snf4 deficiency protein 1) No visible phenotype.,Same phenotype as that of single mutant acd11. FUNCTION: Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. {ECO:0000250}. 57419 Sugar transport protein 13 (Hexose transporter 13) (Multicopy suppressor of snf4 deficiency protein 1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; hexose:proton symporter activity [GO:0009679]; high-affinity hydrogen:glucose symporter activity [GO:0005358]; monosaccharide transmembrane transporter activity [GO:0015145]; glucose import [GO:0046323]; monosaccharide transport [GO:0015749]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] locus:2151074; AT5G26340 sugar transport protein Sugar transport protein MST4 (Monosaccharide transporter 4) (OsMST4) (Sugar:proton symporter MST4) Q10PW9 MST4_ORYSJ MST4 Os03g0218400 LOC_Os03g11900 FUNCTION: Mediates active uptake of hexoses by sugar:proton symport (Probable). Can transport glucose, fructose, mannose and galactose (PubMed:17874189, PubMed:18506478). Can transport xylose and ribose (PubMed:18506478). {ECO:0000269|PubMed:17874189, ECO:0000269|PubMed:18506478, ECO:0000305|PubMed:17874189}. ENOG411DVFA RH57 Q84TG1 RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 (EC 3.6.4.13) high-glucosinolate chemotype caused by overexpression of IQD1 (At3g09710) R-ATH-6791226; 3.6.4.13 60916 DEAD-box ATP-dependent RNA helicase 57 (EC 3.6.4.13) cytoplasm [GO:0005737]; nucleolus [GO:0005730]; ATP binding [GO:0005524]; ATP-dependent RNA helicase activity [GO:0004004]; RNA binding [GO:0003723]; RNA secondary structure unwinding [GO:0010501]; rRNA processing [GO:0006364] locus:2075034; AT3G09720 DEAD-box ATP-dependent RNA helicase DEAD-box ATP-dependent RNA helicase 57 (EC 3.6.4.13) Q5K5B6 RH57_ORYSJ Os07g0647900 LOC_Os07g45360 OJ1316_A04.119 OsJ_25369 P0427D10.102 ENOG411DVFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Transcription factor Os02g0221100 protein A0A0P0VGJ8 A0A0P0VGJ8_ORYSJ Os02g0221100 OSNPB_020221100 ENOG411DVFC F8A5.14,AAC42,RPAC43,ATRPAC42 Q39216,Q9C6C2,A0A1P8AMT1,F4HRL9 Q39216_ARATH,Q9C6C2_ARATH,A0A1P8AMT1_ARATH,F4HRL9_ARATH RNA polymerase I subunit 43 (RNA polymerase subunit) (RNA polymerase subunit (Isoform B)),DNA-directed RNA polymerase family protein (RNA polymerase subunit) (RNA polymerase subunit; 10595-12672),RNA polymerase I subunit 43,DNA-directed RNA polymerase family protein R-ATH-1834949; 43368,41780,36099,33807 RNA polymerase I subunit 43 (RNA polymerase subunit) (RNA polymerase subunit (Isoform B)),DNA-directed RNA polymerase family protein (RNA polymerase subunit) (RNA polymerase subunit; 10595-12672),RNA polymerase I subunit 43,DNA-directed RNA polymerase family protein DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase III promoter [GO:0006383],DNA-directed RNA polymerase I complex [GO:0005736]; DNA-directed RNA polymerase III complex [GO:0005666]; nucleolus [GO:0005730]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription from RNA polymerase I promoter [GO:0006360]; transcription from RNA polymerase III promoter [GO:0006383],DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription, DNA-templated [GO:0006351],DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription, DNA-templated [GO:0006351] locus:2036494;,locus:2025855; AT1G60620,AT1G60850 DNA-directed RNA polymerases I and III subunit Os03g0295400 protein (RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed),Os02g0723600 protein (Putative RNA polymerase subunit) Q10MU2,Q6Z5L9 Q10MU2_ORYSJ,Q6Z5L9_ORYSJ Os03g0295400 LOC_Os03g18410 Os03g0295400 OsJ_10475 OSNPB_030295400,Os02g0723600 Os02g0723600 OsJ_08197 OSNPB_020723600 P0685G12.18 ENOG411DVFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PP2Cc Probable protein phosphatase 2C 14 (OsPP2C14) (EC 3.1.3.16),Os02g0471500 protein (Fragment) Q6K6N7,A0A0N7KF99 P2C14_ORYSJ,A0A0N7KF99_ORYSJ Os02g0471500 LOC_Os02g27220 P0046H03.1 P0403C01.30,Os02g0471500 OSNPB_020471500 ENOG411DVFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 714D1 (EC 1.14.-.-) (Protein ELONGATED UPPERMOST INTERNODE 1) (EUI1) Q5KQH7 C14D1_ORYSJ CYP714D1 EUI1 Os05g0482400 LOC_Os05g40384 OsJ_18961 OSJNBa0095J22.13 FUNCTION: Catalyzes the 16alpha,17-epoxidation on non-13-hydroxylated gibberellins (GAs), including GA4, GA9, and GA12. No activity with GA1, GA20, GA53 or ent-kaurenoic acid. Reduces the biological activity of GAs. {ECO:0000269|PubMed:16399803, ECO:0000269|PubMed:23319637}. MISCELLANEOUS: Overexpression of CYP714D1 causes severe dwarfism and sterility. {ECO:0000305|PubMed:16399803}. ENOG411DVFF CRCK1 Q9FIL7 CRCK1_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 1 (EC 2.7.11.1) 2.7.11.1 52879 Calmodulin-binding receptor-like cytoplasmic kinase 1 (EC 2.7.11.1) cytoplasm [GO:0005737]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]; response to hydrogen peroxide [GO:0042542]; response to salt stress [GO:0009651] locus:2154563; AT5G58940 leucine-rich repeat receptor-like protein kinase At4g00330-like Probable anion transporter 3, chloroplastic (Phosphate transporter 4;3),Os01g0852200 protein,Os01g0852100 protein Q8W0H5,A0A0P0VAE3,A0A0P0VAG0 PHT43_ORYSJ,A0A0P0VAE3_ORYSJ,A0A0P0VAG0_ORYSJ PHT4;3 Os01g0852200 LOC_Os01g63290 P0529E05.4-1 P0529E05.4-2 P0529H11.39-1 P0529H11.39-2,Os01g0852200 OSNPB_010852200,Os01g0852100 OSNPB_010852100 FUNCTION: Probable anion transporter. {ECO:0000250}. ENOG411DVFG Q84TD7,F4J6X3 Q84TD7_ARATH,F4J6X3_ARATH At3g52390 (TatD related DNase) (Uncharacterized protein At3g52390),TatD related DNase 35693,35965 At3g52390 (TatD related DNase) (Uncharacterized protein At3g52390),TatD related DNase endodeoxyribonuclease activity, producing 5'-phosphomonoesters [GO:0016888],deoxyribonuclease activity [GO:0004536]; endodeoxyribonuclease activity, producing 5'-phosphomonoesters [GO:0016888]; DNA catabolic process [GO:0006308] locus:2079884; AT3G52390 deoxyribonuclease Hydrolase, TatD family like protein (Os07g0158200 protein),Os07g0157900 protein (cDNA clone:J013114E17, full insert sequence),Os08g0165800 protein Q6Z130,Q0D8I5,A0A0P0XCN4 Q6Z130_ORYSJ,Q0D8I5_ORYSJ,A0A0P0XCN4_ORYSJ Os07g0158200 OSNPB_070158200 P0455F03.22,Os07g0157900 Os07g0157900 OSNPB_070157900,Os08g0165800 OSNPB_080165800 ENOG411DZY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family NA NA NA NA NA NA NA ENOG411DS4C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA carbonic anhydrase Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) A0A0P0V5S4 A0A0P0V5S4_ORYSJ Os01g0640000 OSNPB_010640000 FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000256|RuleBase:RU003956}. ENOG411DYJ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase GDSL-like Lipase/Acylhydrolase family protein, expressed (Os03g0859100 protein) (Putative anther-specific proline-rich protein) (Putative lipase/acylhydrolase) (cDNA clone:006-203-D07, full insert sequence),Os03g0859100 protein Q84M86,A3APY6,A3APY7 Q84M86_ORYSJ,A3APY6_ORYSJ,A3APY7_ORYSJ Os03g0859100 LOC_Os03g64170 Os03g0859100 OSJNBa0033P04.15 OSJNBa0059G06.2 OSNPB_030859100,Os03g0859100 OsJ_13446 OSNPB_030859100,Os03g0859100 OsJ_13447 OSNPB_030859100 ENOG411DYJ8 AAH O49434,A0A1P8B8I1 AAH_ARATH,A0A1P8B8I1_ARATH Allantoate deiminase (EC 3.5.3.9) (Allantoate amidohydrolase) (AtAAH),Allantoate amidohydrolase DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants are unable to grow on a medium containing allantoin as the sole nitrogen source and accumulate allantoate. {ECO:0000269|PubMed:16496096, ECO:0000269|PubMed:18065556, ECO:0000269|PubMed:23940254}. The allantoate content of Ataah mutant seedlings grown for 2 weeks on plates with nitrate as the nitrogen source was severalfold higher than in the wild type.,Unable to grow with 10 mM allantoin as the sole nitrogen source. FUNCTION: Involved in the catabolism of purine nucleotides. Can use allantoate as substrate, but not Nalpha-carbamoyl-L-Asp, Nalpha-carbamoyl-L-Ala or Nalpha-carbamoyl-Gly. The sequential activity of AAH, UGLYAH and UAH allows a complete purine breakdown without the intermediate generation of urea. {ECO:0000269|PubMed:16496096, ECO:0000269|PubMed:18065556, ECO:0000269|PubMed:19935661, ECO:0000269|PubMed:23940254}. ARA:AT4G20070-MONOMER;MetaCyc:AT4G20070-MONOMER; 3.5.3.9; 3.5.3.9 56524,45722 Allantoate deiminase (EC 3.5.3.9) (Allantoate amidohydrolase) (AtAAH),Allantoate amidohydrolase endoplasmic reticulum [GO:0005783]; allantoate deiminase activity [GO:0047652]; metal ion binding [GO:0046872]; metallopeptidase activity [GO:0008237]; purine nucleobase catabolic process [GO:0006145]; ureide catabolic process [GO:0010136],hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [GO:0016813]; metallopeptidase activity [GO:0008237] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers, siliques and seeds. {ECO:0000269|PubMed:16496096}. locus:2119732; AT4G20070 Allantoate deiminase Probable allantoate deiminase (EC 3.5.3.9) (Allantoate amidohydrolase) (OsAAH) Q655X8 AAH_ORYSJ AAH Os06g0665500 LOC_Os06g45480 OsJ_22281 P0473H04.24 FUNCTION: Involved in the catabolism of purine nucleotides. The sequential activity of AAH, UGLYAH and UAH allows a complete purine berakdown without the intermediate generation of urea. {ECO:0000269|PubMed:23940254}. ENOG411DYJS BGLU42 Q9FIW4 BGL42_ARATH Beta-glucosidase 42 (AtBGLU42) (EC 3.2.1.21) FUNCTION: Involved in the secretion of root-derived phenolics upon iron ions (Fe) depletion. Promotes disease resistance toward B.cinerea, H.arabidopsidis and P.syringae pv. tomato DC3000. Required during rhizobacteria-mediated (e.g. P.fluorescens WCS417r) broad-spectrum induced systemic resistance (ISR) against several pathogens. {ECO:0000269|PubMed:25138267}. ARA:AT5G36890-MONOMER; R-ATH-189085; 3.2.1.21 56077 Beta-glucosidase 42 (AtBGLU42) (EC 3.2.1.21) cytosol [GO:0005829]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; cellular response to ethylene stimulus [GO:0071369]; cellular response to iron ion [GO:0071281]; cellular response to nitric oxide [GO:0071732]; cellulose catabolic process [GO:0030245]; glycosyl compound metabolic process [GO:1901657] locus:2167479; AT5G36890 beta-glucan catabolic process Beta-glucosidase 4 (Os1bglu4) (EC 3.2.1.21) Q5N863 BGL04_ORYSJ BGLU4 Os01g0897600 LOC_Os01g67220 OsJ_04409 P0506A10.5 P0674H09.22 ENOG411DYJR Q9M891,Q8LPF1 PP208_ARATH,PP387_ARATH Pentatricopeptide repeat-containing protein At3g02490, mitochondrial,Pentatricopeptide repeat-containing protein At5g15980, mitochondrial 75706,75298 Pentatricopeptide repeat-containing protein At3g02490, mitochondrial,Pentatricopeptide repeat-containing protein At5g15980, mitochondrial mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451]; RNA splicing [GO:0008380] locus:2076854;,locus:2146072; AT3G02490,AT5G15980 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DYJQ PMK Q9C6T1 PMK_ARATH Phosphomevalonate kinase, peroxisomal (EC 2.7.4.2) (5-phosphomevalonate kinase) (AtPMK) PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway; isopentenyl diphosphate from (R)-mevalonate: step 2/3. {ECO:0000305}. ARA:AT1G31910-MONOMER; 2.7.4.2 54409 Phosphomevalonate kinase, peroxisomal (EC 2.7.4.2) (5-phosphomevalonate kinase) (AtPMK) peroxisome [GO:0005777]; ATP binding [GO:0005524]; phosphomevalonate kinase activity [GO:0004631]; isopentenyl diphosphate biosynthetic process, mevalonate pathway [GO:0019287]; sterol biosynthetic process [GO:0016126] locus:2034466; AT1G31910 Phosphomevalonate Os03g0253100 protein (Phosphomevalonate kinase, putative, expressed) Q10NZ7 Q10NZ7_ORYSJ Os03g0253100 LOC_Os03g14830 Os03g0253100 OSNPB_030253100 ENOG411DYJJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1675) Ninja-family protein MODD (Protein MEDIATOR OF OSBZIP46 DEACTIVATION AND DEGRADATION),Os03g0214200 protein Q10Q07,A0A0P0VUP5 NNJA1_ORYSJ,A0A0P0VUP5_ORYSJ MODD Os03g0214200 LOC_Os03g11550,Os03g0214200 OSNPB_030214200 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased abscisic acid (ABA) sensitivity and drought resistance. {ECO:0000269|PubMed:27468891}. FUNCTION: Acts as negative regulator of abscisic acid (ABA) signaling and drought tolerance. Mediates deactivation and degradation of BZIP46, a positive regulator of ABA signaling and drought stress tolerance. Represses BZIP46 activity via interaction with the TPR3-HDAC1 corepressor complex and down-regulation of the histone acetylation level at BZIP46 target genes. Promotes BZIP46 degradation via interaction with the U-box type ubiquitin E3 ligase PUB70. {ECO:0000269|PubMed:27468891}. ENOG411DYJH SMC6A,SMC6B Q9FLR5,Q9FII7 SMC6A_ARATH,SMC6B_ARATH Structural maintenance of chromosomes protein 6A,Structural maintenance of chromosomes protein 6B (DNA repair protein RAD18) (AtRAD18) DISRUPTION PHENOTYPE: Delayed root growth in seedlings. {ECO:0000269|PubMed:19737979}.,DISRUPTION PHENOTYPE: Delayed root growth in seedlings. Hypersensitivity to genotoxic stress such as UV-C, X-rays, methyl methanesulfonate (MMS) and mitomycin C (MMC). {ECO:0000269|PubMed:10449416, ECO:0000269|PubMed:19737979}. Delayed growth during later stages of development. Sensitive to DNA damaging agents; Reduced somatic intrachromosomal homologous recombination-J. Paszkowski-1999 FUNCTION: Core component of the SMC5-SMC6 complex that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. {ECO:0000269|PubMed:19737979}.,FUNCTION: Core component of the SMC5-SMC6 complex that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. {ECO:0000269|PubMed:10449416, ECO:0000269|PubMed:11069693, ECO:0000269|PubMed:19070688, ECO:0000269|PubMed:19737979}. 122195,121779 Structural maintenance of chromosomes protein 6A,Structural maintenance of chromosomes protein 6B (DNA repair protein RAD18) (AtRAD18) nucleus [GO:0005634]; Smc5-Smc6 complex [GO:0030915]; ATP binding [GO:0005524]; double-strand break repair via homologous recombination [GO:0000724]; response to X-ray [GO:0010165]; sister chromatid cohesion [GO:0007062],nucleus [GO:0005634]; Smc5-Smc6 complex [GO:0030915]; ATP binding [GO:0005524]; double-strand break repair [GO:0006302]; double-strand break repair via homologous recombination [GO:0000724]; response to X-ray [GO:0010165]; sister chromatid cohesion [GO:0007062] TISSUE SPECIFICITY: Expressed in seedlings, rosette leaves and floral buds. {ECO:0000269|PubMed:19737979}.,TISSUE SPECIFICITY: Expressed in seedlings, rosette leaves and floral buds. {ECO:0000269|PubMed:10449416, ECO:0000269|PubMed:19737979}. locus:2160289;,locus:2161163; AT5G07660,AT5G61460 Structural maintenance of chromosomes Os09g0121000 protein (cDNA clone:002-113-D11, full insert sequence),Os09g0121050 protein B7EZI6,A0A0P0XJA8 B7EZI6_ORYSJ,A0A0P0XJA8_ORYSJ Os09g0121000 OSNPB_090121000,Os09g0121050 OSNPB_090121050 ENOG411DYJB SYP32 Q9LK09,F4J6K6 SYP32_ARATH,F4J6K6_ARATH Syntaxin-32 (AtSYP32),Syntaxin of plants 32 FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-204005;R-ATH-5694530;R-ATH-6807878;R-ATH-6811438; 39119,40837 Syntaxin-32 (AtSYP32),Syntaxin of plants 32 Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; SNAP receptor activity [GO:0005484]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192] locus:2087208; AT3G24350 syntaxin Os01g0179200 protein (Putative syntaxin of plants 31) (cDNA clone:002-103-B08, full insert sequence) Q9LGF8 Q9LGF8_ORYSJ Os01g0179200 OSNPB_010179200 P0406H10.17 P0509B06.19 ENOG411DXY9 RDUF1,DURF2,RHC2A,RDUF2 Q9SNB6,Q940T5,O22283,A0A1P8BDZ2 RDUF1_ARATH,RDUF2_ARATH,RHC2A_ARATH,A0A1P8BDZ2_ARATH E3 ubiquitin-protein ligase RDUF1 (EC 2.3.2.27) (RING and DUF1117 domain-containing protein 1) (AtRDUF1) (RING-type E3 ubiquitin transferase RDUF1),E3 ubiquitin-protein ligase RDUF2 (EC 2.3.2.27) (RING and DUF1117 domain-containing protein 2) (AtRDUF2) (RING-type E3 ubiquitin transferase RDUF2),Probable E3 ubiquitin-protein ligase RHC2A (EC 2.3.2.27) (RING-H2 finger C2a) (RING-H2 zinc finger protein RHC2a) (RING-type E3 ubiquitin transferase RHC2A),Zinc finger (C3HC4-type RING finger) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:22405823, PubMed:23951086). Mutant plants have decreased sensitivity to abscisic acid (ABA) and reduced tolerance to drought stress (PubMed:22405823). {ECO:0000269|PubMed:22405823, ECO:0000269|PubMed:23951086}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have decreased sensitivity to abscisic acid (ABA) and reduced tolerance to drought stress. {ECO:0000269|PubMed:22405823}. FUNCTION: E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses (PubMed:22405823). Involved in the positive regulation of responses to salt and osmotic stresses during seed germination and early seedling development (PubMed:23951086). Possesses E3 ubiquitin ligase activity in vitro (PubMed:22405823, PubMed:23951086). {ECO:0000269|PubMed:22405823, ECO:0000269|PubMed:23951086}.,FUNCTION: E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses. Possesses E3 ubiquitin ligase activity in vitro. {ECO:0000269|PubMed:22405823}.,FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9ZT50}. MISCELLANEOUS: Plants over-expressing RDUF1 display decreased sensitivity to salt and osmotic stresses. {ECO:0000269|PubMed:23951086}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}. R-ATH-983168; 2.3.2.27 43151,44381,43109,56048 E3 ubiquitin-protein ligase RDUF1 (EC 2.3.2.27) (RING and DUF1117 domain-containing protein 1) (AtRDUF1) (RING-type E3 ubiquitin transferase RDUF1),E3 ubiquitin-protein ligase RDUF2 (EC 2.3.2.27) (RING and DUF1117 domain-containing protein 2) (AtRDUF2) (RING-type E3 ubiquitin transferase RDUF2),Probable E3 ubiquitin-protein ligase RHC2A (EC 2.3.2.27) (RING-H2 finger C2a) (RING-H2 zinc finger protein RHC2a) (RING-type E3 ubiquitin transferase RHC2A),Zinc finger (C3HC4-type RING finger) family protein cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein autoubiquitination [GO:0051865]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to water deprivation [GO:0009414],cytosol [GO:0005829]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; abscisic acid-activated signaling pathway [GO:0009738]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein autoubiquitination [GO:0051865]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to water deprivation [GO:0009414],metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] TISSUE SPECIFICITY: Expressed in root tips, leaf tips, junction of carpels and pedicels, stigma, anthers, pollen, vasculature of sepals and petals, immature seeds and embryos. {ECO:0000269|PubMed:23951086}. locus:2075175;,locus:2148318;,locus:2063912; AT3G46620,AT5G59550,AT2G39720 zinc finger Os05g0110000 protein (Putative ring-H2 finger protein),Os10g0128900 protein (Putative RING-H2 finger protein) (Zinc finger family protein, putative),Os01g0972000 protein (RING-H2 finger protein-like) (cDNA clone:001-206-A03, full insert sequence),Os10g0128700 protein Q65XW6,Q8LSS0,Q5JME3,A0A0P0XSD4 Q65XW6_ORYSJ,Q8LSS0_ORYSJ,Q5JME3_ORYSJ,A0A0P0XSD4_ORYSJ Os05g0110000 Os05g0110000 OSNPB_050110000 P0016H04.2,Os10g0128900 LOC_Os10g03920 OSJNBb0072F04.3 OSNPB_100128900,Os01g0972000 Os01g0972000 OsJ_04929 OSNPB_010972000 P0518C01.19,Os10g0128700 OSNPB_100128700 ENOG411DXY8 LHCA5 Q9C639 LHCA5_ARATH Photosystem I chlorophyll a/b-binding protein 5, chloroplastic (Lhca5) (LHCI type III LHCA5) DISRUPTION PHENOTYPE: Slightly lower NDH activity in immature leaves. Smaller version of the NAD(P)H dehydrogenase-photosystem I supercomplex (NDH-PSI) supercomplex (PubMed:19903870). In the double mutant lhca5 lhca6, drastic reduction of NDH subunits accumulation upon increased light intensity (PubMed:21278308). {ECO:0000269|PubMed:19903870, ECO:0000269|PubMed:21278308}. FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (PubMed:15563470, PubMed:21806943). Seems involved in the function of the photosystem I in low light conditions, when other LHCA proteins are less abundant (PubMed:15356385). Required, together with LHCA6, for the formation of a full-size NAD(P)H dehydrogenase-photosystem I supercomplex (NDH-PSI) that triggers cyclic and chlororespiratory electron transport in chloroplast thylakoids, especially under stress conditions (e.g. increased light intensity) (Probable) (PubMed:19903870, PubMed:21278308). {ECO:0000269|PubMed:15356385, ECO:0000269|PubMed:15563470, ECO:0000269|PubMed:19903870, ECO:0000269|PubMed:21278308, ECO:0000269|PubMed:21806943, ECO:0000305|PubMed:21785130}. MISCELLANEOUS: Light emission at 684 nm upon excitation at 410 and 470 nm. {ECO:0000269|PubMed:15563470}. 27802 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic (Lhca5) (LHCI type III LHCA5) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem I antenna complex [GO:0009782]; plastoglobule [GO:0010287]; chlorophyll binding [GO:0016168]; metal ion binding [GO:0046872]; pigment binding [GO:0031409]; protein homodimerization activity [GO:0042803]; photosynthesis, light harvesting in photosystem I [GO:0009768]; protein-chromophore linkage [GO:0018298]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to low light intensity stimulus [GO:0009645] locus:2825741; AT1G45474 Chlorophyll A-B binding protein Chlorophyll a-b binding protein, chloroplastic,Chlorophyll a-b binding protein, chloroplastic (Fragment) Q6Z7Q1,A0A0N7KG53 Q6Z7Q1_ORYSJ,A0A0N7KG53_ORYSJ Os02g0764500 OsJ_08493 OSNPB_020764500 P0539D10.17,Os02g0764500 OSNPB_020764500 FUNCTION: The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated. {ECO:0000256|RuleBase:RU363080}. ENOG411DXY7 PXM16 O22941,F4J3D9,F4HNU6,F4J3D6,A0A1I9LR11,F4J3D7,F4K9D7,A0A1I9LPB3,A0A1I9LPB2,A0A1I9LPB4 IDE1_ARATH,IDE2_ARATH,NRDC_ARATH,F4J3D6_ARATH,A0A1I9LR11_ARATH,F4J3D7_ARATH,F4K9D7_ARATH,A0A1I9LPB3_ARATH,A0A1I9LPB2_ARATH,A0A1I9LPB4_ARATH Insulin-degrading enzyme-like 1, peroxisomal (EC 3.4.24.-) (Insulysin-like 1) (Peroxisomal M16 protease) (Zinc-metallopeptidase),Insulin-degrading enzyme-like 2 (EC 3.4.24.-) (Insulysin-like 2),Nardilysin-like (EC 3.4.24.61) (N-arginine dibasic convertase-like) (NRD convertase-like) (NRD-C),Catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding protein,Zinc-metallopeptidase, peroxisomal protein,Insulinase (Peptidase family M16) family protein,Uncharacterized protein DISRUPTION PHENOTYPE: No visible phenotype, and full processing of glyoxysomal precursor proteins. {ECO:0000269|PubMed:17592111, ECO:0000269|PubMed:19748917}. FUNCTION: Peptidase that might be involved in pathogen or wound response. Not required for peroxisome biogenesis, indole-3-butyric acid (IBA) metabolism, fatty acid beta-oxidation or degradation of glyoxylate cycle enzymes during seedling development. {ECO:0000269|PubMed:19748917}.,FUNCTION: Cleaves peptide substrates on the N-terminus of arginine residues in dibasic pairs. {ECO:0000305}. 3.4.24.-,3.4.24.61 110995,110688,117172,29017,11448,101411,34119,89023,89469,102527 Insulin-degrading enzyme-like 1, peroxisomal (EC 3.4.24.-) (Insulysin-like 1) (Peroxisomal M16 protease) (Zinc-metallopeptidase),Insulin-degrading enzyme-like 2 (EC 3.4.24.-) (Insulysin-like 2),Nardilysin-like (EC 3.4.24.61) (N-arginine dibasic convertase-like) (NRD convertase-like) (NRD-C),Catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding protein,Zinc-metallopeptidase, peroxisomal protein,Insulinase (Peptidase family M16) family protein,Uncharacterized protein peroxisome [GO:0005777]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222],metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222],cytosol [GO:0005829]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222],catalytic activity [GO:0003824]; metal ion binding [GO:0046872],mitochondrial inner membrane [GO:0005743]; metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270]; protein processing involved in protein targeting to mitochondrion [GO:0006627] locus:2054346;,locus:2103523;,locus:2033082;,locus:2179177; AT2G41790,AT3G57470,AT1G06900,AT3G57460,AT5G01440 K01408 insulysin EC 3.4.24.56 Os01g0778800 protein (Putative insulin degrading enzyme),Insulinase containing protein, expressed (Os03g0336300 protein) (cDNA clone:J013153C08, full insert sequence),Os07g0570300 protein (Putative insulin degrading enzyme),Os07g0570100 protein (Fragment),Os01g0779100 protein,Os07g0570500 protein Q5ZCF2,Q10LS9,Q7XIH2,A0A0P0X879,A0A0P0V8V5,A0A0N7KNP9 Q5ZCF2_ORYSJ,Q10LS9_ORYSJ,Q7XIH2_ORYSJ,A0A0P0X879_ORYSJ,A0A0P0V8V5_ORYSJ,A0A0N7KNP9_ORYSJ Os01g0778800 OSNPB_010778800 P0010B10.6,Os03g0336300 LOC_Os03g21810 Os03g0336300 OSNPB_030336300,Os07g0570300 Os07g0570300 OJ1019_E02.25 OSNPB_070570300,Os07g0570100 OSNPB_070570100,Os01g0779100 OSNPB_010779100,Os07g0570500 OSNPB_070570500 ENOG411DXY6 NIP7-1,NIP7:1 Q8LAI1,A0A1I9LT37,A0A1I9LT38 NIP71_ARATH,A0A1I9LT37_ARATH,A0A1I9LT38_ARATH Probable aquaporin NIP7-1 (NOD26-like intrinsic protein 7-1) (AtNIP7;1),NOD26-like intrinsic protein 71 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. {ECO:0000250}. 28746,20747,23338 Probable aquaporin NIP7-1 (NOD26-like intrinsic protein 7-1) (AtNIP7;1),NOD26-like intrinsic protein 71 integral component of plasma membrane [GO:0005887]; borate transmembrane transporter activity [GO:0046715]; water channel activity [GO:0015250]; borate transmembrane transport [GO:0035445],integral component of membrane [GO:0016021]; transporter activity [GO:0005215] TISSUE SPECIFICITY: Expressed in floral buds. {ECO:0000269|PubMed:11806824}. locus:2082385; AT3G06100 Aquaporin NA NA NA NA NA NA NA ENOG411DXY5 Q94CA9 Q94CA9_ARATH DNA glycosylase superfamily protein (Putative DNA-3-methyladenine glycosylase I) ARA:AT1G75090-MONOMER; 37348 DNA glycosylase superfamily protein (Putative DNA-3-methyladenine glycosylase I) DNA-3-methyladenine glycosylase activity [GO:0008725]; base-excision repair [GO:0006284] locus:2037268; AT1G75090 GMP synthase glutamine-hydrolyzing -like Methyladenine glycosylase family protein, expressed (Os03g0198900 protein) (cDNA clone:001-113-C01, full insert sequence) Q10QF1 Q10QF1_ORYSJ LOC_Os03g10220 Os03g0198900 OSNPB_030198900 ENOG411DXY4 Q9LZ59,O80935,A0A1P8AXU9 Q9LZ59_ARATH,O80935_ARATH,A0A1P8AXU9_ARATH Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein T22P11_20),Putative WD-40 repeat protein (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein 99895,101344,101475 Transducin/WD40 repeat-like superfamily protein (Uncharacterized protein T22P11_20),Putative WD-40 repeat protein (Transducin/WD40 repeat-like superfamily protein),Transducin/WD40 repeat-like superfamily protein locus:2181733;,locus:2040731; AT5G02430,AT2G37670 WD-40 repeat family protein Os11g0187100 protein,Os12g0178633 protein (Fragment) B9G9S5,A0A0P0Y7J6 B9G9S5_ORYSJ,A0A0P0Y7J6_ORYSJ Os11g0187100 OsJ_33233 OSNPB_110187100,Os12g0178633 OSNPB_120178633 ENOG411DXY3 VPS33,ATVPS33 Q94KJ7,F4JE40 VPS33_ARATH,F4JE40_ARATH Vacuolar protein-sorting-associated protein 33 homolog (AtVPS33),Sec1/munc18-like (SM) proteins superfamily FUNCTION: Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment. {ECO:0000269|PubMed:12589039}. 66912,68932 Vacuolar protein-sorting-associated protein 33 homolog (AtVPS33),Sec1/munc18-like (SM) proteins superfamily late endosome membrane [GO:0031902]; protein complex [GO:0043234]; vacuolar membrane [GO:0005774]; vesicle docking involved in exocytosis [GO:0006904],cytosol [GO:0005829]; plant-type vacuole membrane [GO:0009705]; vacuole organization [GO:0007033]; vesicle docking involved in exocytosis [GO:0006904] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, siliques and flowers. {ECO:0000269|PubMed:12589039}. locus:2082692; AT3G54860 Vacuolar protein sorting-associated protein 33 homolog Os04g0223000 protein (cDNA clone:J013097L24, full insert sequence) Q0JEQ3 Q0JEQ3_ORYSJ Os04g0223000 Os04g0223000 OSNPB_040223000 ENOG411DXY1 IP5P4,IP5P6,IP5P7 Q8GTS0,Q9LR47,Q0WQ41 IP5P4_ARATH,IP5P6_ARATH,IP5P7_ARATH Type I inositol polyphosphate 5-phosphatase 4 (At5PTase4) (EC 3.1.3.-),Type IV inositol polyphosphate 5-phosphatase 6 (At5PTase6) (EC 3.1.3.36) (EC 3.1.3.86) (Protein COTYLEDON VASCULAR PATTERN 2),Type IV inositol polyphosphate 5-phosphatase 7 (At5PTase7) (EC 3.1.3.36) (EC 3.1.3.86) (Protein CVP2 LIKE 1) (Protein CVL1) DISRUPTION PHENOTYPE: No visible phenotype (PubMed:19473324). Increased salt sensitivity with reduced production of reactive oxygen species (ROS) (PubMed:21677096). {ECO:0000269|PubMed:19473324, ECO:0000269|PubMed:21677096}. cvp2-1 mutants have defective foliar vascular patterning due to a reduced recruitment of cells into vascular tissue. cvp2-1 cotyledons have an aberrant open reticulum an increased number of free vein endings and vascular islands. cvp2-1 leaves have abnormal secondary tertiary and quarternary venation patterns. IP3 levels are increased in cvp2-1 seedlings and these mutants are hypersensitive to ABA in a seed germination assay. Altered vein patterning in cotyledons-T. Nelson-2004 FUNCTION: Has phosphatase activity toward PtdIns(4,5)P2 and PtdIns(3,4,5)P3 (PubMed:19473324). Required for the patterning of procambium and during the differentiation of vascular tissues. Acts before the acquisition of preprocambial identity. Seems to be also involved in the abscisic acid (ABA) signaling pathway (PubMed:10559439, PubMed:15100402). Acts redundantly with CVL1 for maintaining vascular continuity (PubMed:19363154, PubMed:25813544). Regulates phosphoinositide-dependent VAN3 localization (PubMed:19473324). {ECO:0000269|PubMed:10559439, ECO:0000269|PubMed:15100402, ECO:0000269|PubMed:19363154, ECO:0000269|PubMed:19473324, ECO:0000269|PubMed:25813544}.,FUNCTION: Has phosphatase activity toward PtdIns(4,5)P2 and at a lower extent toward PtdIns(3,4,5)P3 but not toward Ins(1,4,5)P3 (PubMed:19473324, PubMed:21677096, PubMed:23658066). Acts redundantly with CVP2 for maintaining vascular continuity (PubMed:19363154, PubMed:25813544). Regulates phosphoinositide-dependent VAN3 localization (PubMed:19473324). Functions in salt stress response by regulating reactive oxygen species (ROS) production and stress-responsive genes expression (PubMed:21677096). {ECO:0000269|PubMed:19363154, ECO:0000269|PubMed:19473324, ECO:0000269|PubMed:21677096, ECO:0000269|PubMed:23658066, ECO:0000269|PubMed:25813544}. MISCELLANEOUS: CVP2 overexpression impairs protophloeme sieve element differentiation and overall root growth. Cvp1 and cvp2 double mutant displays high PtdIns(4,5)P2 levels. {ECO:0000269|PubMed:25813544}.,MISCELLANEOUS: Cvp1 and cvp2 double mutant displays high PtdIns(4,5)P2 levels. {ECO:0000269|PubMed:25813544}. ARA:AT3G63240-MONOMER;,ARA:AT1G05470-MONOMER; R-ATH-1660499;R-ATH-1855183;R-ATH-1855204; 3.1.3.-,3.1.3.36; 3.1.3.86 62177,70853,68245 Type I inositol polyphosphate 5-phosphatase 4 (At5PTase4) (EC 3.1.3.-),Type IV inositol polyphosphate 5-phosphatase 6 (At5PTase6) (EC 3.1.3.36) (EC 3.1.3.86) (Protein COTYLEDON VASCULAR PATTERN 2),Type IV inositol polyphosphate 5-phosphatase 7 (At5PTase7) (EC 3.1.3.36) (EC 3.1.3.86) (Protein CVP2 LIKE 1) (Protein CVL1) hydrolase activity [GO:0016787]; phosphatidylinositol dephosphorylation [GO:0046856],intracellular [GO:0005622]; inositol trisphosphate phosphatase activity [GO:0046030]; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; abscisic acid-activated signaling pathway [GO:0009738]; cell differentiation [GO:0030154]; cotyledon vascular tissue pattern formation [GO:0010588]; inositol phosphate dephosphorylation [GO:0046855]; inositol phosphate-mediated signaling [GO:0048016]; inositol trisphosphate metabolic process [GO:0032957]; leaf vascular tissue pattern formation [GO:0010305]; phosphatidylinositol dephosphorylation [GO:0046856]; procambium histogenesis [GO:0010067]; response to abscisic acid [GO:0009737]; xylem and phloem pattern formation [GO:0010051],nucleus [GO:0005634]; plasma membrane [GO:0005886]; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity [GO:0034485]; phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [GO:0004439]; cellular response to salt stress [GO:0071472]; leaf vascular tissue pattern formation [GO:0010305]; phosphatidylinositol dephosphorylation [GO:0046856]; regulation of reactive oxygen species metabolic process [GO:2000377] DEVELOPMENTAL STAGE: During early stages of embryogenesis, broadly expressed throughout globular and torpedo stages. At late torpedo stage, strongly expressed in developing vascular cells and weakly expressed in surrounding cells. By the walking-stick stage, restricted to incipient vascular cells of the apical loop, the midvein of the cotyledon and the root vasculature. In emerging leaves, strongly expressed in procambium and weakly expressed in areole cells. Limited to developing vascular cells in later stage of leaf development. In roots, expressed in procambium of the elongating zone and in immature vascular cells of the root differentiation zone. During inflorescence development, broadly expressed in young floral buds, and gradually restricted to procambium of cauline leaves, sepals, petals, gynoecia and anthers. {ECO:0000269|PubMed:15100402, ECO:0000269|PubMed:19473324}.,DEVELOPMENTAL STAGE: Expressed in developing veins of late torpedo, walking stick and bent cotyledon stage embryos. {ECO:0000269|PubMed:19473324}. TISSUE SPECIFICITY: Broadly expressed in emerging organs. Mostly localized in procambium of growing organs. Restricted to vascular differentiating cells of young organs. {ECO:0000269|PubMed:15100402, ECO:0000269|PubMed:19473324}.,TISSUE SPECIFICITY: Broadly expressed in emerging organs. Mostly localized in procambium of growing organs. Restricted to vascular differentiating cells of young organs. {ECO:0000269|PubMed:19473324}. locus:2077314;,locus:2201016;,locus:2045502; AT3G63240,AT1G05470,AT2G32010 type I inositol-145-trisphosphate 5-phosphatase Os03g0160600 protein,Os03g0663700 protein (Putative phosphatase (With alternative splicing)) (cDNA clone:J033086H07, full insert sequence),Os07g0175900 protein (Putative inositol-1,4,5-trisphosphate 5-phosphatase) (cDNA clone:J013097N09, full insert sequence),Os10g0422500 protein (Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed),Os03g0793600 protein B9FBF8,Q75GX6,Q6ZF04,Q338A2,A0A0N7KI72 B9FBF8_ORYSJ,Q75GX6_ORYSJ,Q6ZF04_ORYSJ,Q338A2_ORYSJ,A0A0N7KI72_ORYSJ Os03g0160600 OsJ_09496 OSNPB_030160600,Os03g0663700 OSJNBa0034D21.13 OSNPB_030663700,Os07g0175900 OSNPB_070175900 P0534H07.8,LOC_Os10g28660 Os10g0422500 OSNPB_100422500,Os03g0793600 OSNPB_030793600 ENOG411DXY0 Q9LJE6,Q8VXU9 Q9LJE6_ARATH,Q8VXU9_ARATH N6-DNA-methyltransferase-like protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),AT3g13440/MRP15_7 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) R-ATH-156581;R-ATH-72764; 27275,30764 N6-DNA-methyltransferase-like protein (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein),AT3g13440/MRP15_7 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) nucleic acid binding [GO:0003676]; protein methyltransferase activity [GO:0008276],cytoplasm [GO:0005737]; nucleic acid binding [GO:0003676]; protein methyltransferase activity [GO:0008276]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757] locus:2092900; AT3G13440 methyltransferase Methylase family protein, expressed (Os03g0824200 protein) (cDNA clone:001-032-F02, full insert sequence) Q852B9 Q852B9_ORYSJ OSJNBb0081B07.5 LOC_Os03g60920 Os03g0824200 OsJ_13176 OSNPB_030824200 ENOG411DXYK CYP38 Q9SSA5 CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic (PPIase CYP38) (EC 5.2.1.8) (Rotamase CYP38) (Thylakoid lumen PPIase) DISRUPTION PHENOTYPE: Stunted growth and hypersensitivity to high light. {ECO:0000269|PubMed:17909185}. decreased accumulation of PSII; drastically decreased level of the in vivo phosphorylation of PSII core proteins,reduced growth and pale green leaves compared with type when grown under low-light conditions (25-35umol/m2/s). Pale green leaves; Dwarf; Sensitive to high light-S. Luan-2007 FUNCTION: Required for the assembly and stabilization of PSII, but has no PPIases activity. {ECO:0000269|PubMed:17909185, ECO:0000269|PubMed:22706283}. 5.2.1.8 47982 Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic (PPIase CYP38) (EC 5.2.1.8) (Rotamase CYP38) (Thylakoid lumen PPIase) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid lumen [GO:0009543]; chloroplast thylakoid membrane [GO:0009535]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; defense response to bacterium [GO:0042742]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. Lower levels of expression in roots. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2084138; AT3G01480 Peptidyl-prolyl cis-trans isomerase Os08g0382400 protein (Putative Peptidyl-prolyl cis-trans isomerase, chloroplast (40 kDa thylakoid lumen rotamase)) (cDNA clone:J013111G22, full insert sequence),Os08g0382400 protein (Fragment) Q6YW78,A0A0N7KPS5,A0A0P0XF43 Q6YW78_ORYSJ,A0A0N7KPS5_ORYSJ,A0A0P0XF43_ORYSJ Os08g0382400 B1090H08.5 OSJNBa0013H03.27 OSNPB_080382400,Os08g0382400 OSNPB_080382400 ENOG411DXYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Putative cyclase Cyclase-like protein 2 (OsCYL2) Q67WE2 CYL2_ORYSJ CYL2 Os06g0638700 LOC_Os06g43180 P0523F01.29 FUNCTION: May be involved in response to stresses. {ECO:0000250|UniProtKB:Q6YX89}. ENOG411DXYI Q0WTB4 Y3725_ARATH GTP-binding protein At3g49725, chloroplastic 69579 GTP-binding protein At3g49725, chloroplastic chloroplast [GO:0009507]; cytoplasm [GO:0005737]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; ribosome binding [GO:0043022] locus:5019474783; AT3G49725 GTP-binding protein Os03g0727900 protein Q0DNY0 Q0DNY0_ORYSJ Os03g0727900 OSNPB_030727900 ENOG411DXYH MPK13 Q9LQQ9 MPK13_ARATH Mitogen-activated protein kinase 13 (AtMPK13) (MAP kinase 13) (EC 2.7.11.24) DISRUPTION PHENOTYPE: RNAi MPK13 displays fewer lateral roots. {ECO:0000269|PubMed:21904115}. FUNCTION: MKK6-MPK13 module positively regulates lateral root formation. {ECO:0000269|PubMed:21904115}. R-ATH-110056;R-ATH-112409;R-ATH-112411;R-ATH-198753;R-ATH-198765;R-ATH-202670;R-ATH-2559582;R-ATH-3371453;R-ATH-375165;R-ATH-442742;R-ATH-444257;R-ATH-445144;R-ATH-5673001;R-ATH-5674135;R-ATH-5674499;R-ATH-6798695;R-ATH-881907; 2.7.11.24 42195 Mitogen-activated protein kinase 13 (AtMPK13) (MAP kinase 13) (EC 2.7.11.24) cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]; lateral root formation [GO:0010311]; regulation of gene expression [GO:0010468] TISSUE SPECIFICITY: Expressed in roots, stems and flower buds. {ECO:0000269|PubMed:15474000}. locus:2026484; AT1G07880 Mitogen-activated protein kinase NA NA NA NA NA NA NA ENOG411DXYG AGO3,AGO2 Q9SHF2,Q9SHF3,A0A1P8ATK9,A0A1P8ATL0 AGO3_ARATH,AGO2_ARATH,A0A1P8ATK9_ARATH,A0A1P8ATL0_ARATH Protein argonaute 3,Protein argonaute 2,ARGONAUTE 3 FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression (By similarity). {ECO:0000250}.,FUNCTION: Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates mainly with siRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal adenosine. Probably involved in antiviral RNA silencing. Associates with siRNA derived from cucumber mosaic virus (CMV). Targeted by turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO2 function in RNA silencing. Required to direct NERD-dependent DNA methylation and silencing. {ECO:0000269|PubMed:17869110, ECO:0000269|PubMed:18342361, ECO:0000269|PubMed:18342362, ECO:0000269|PubMed:18344228, ECO:0000269|PubMed:22940247}. R-ATH-426486;R-ATH-426496;R-ATH-5578749; 129185,113423,122050,125695 Protein argonaute 3,Protein argonaute 2,ARGONAUTE 3 intracellular ribonucleoprotein complex [GO:0030529]; RNA binding [GO:0003723]; defense response to virus [GO:0051607]; gene silencing by RNA [GO:0031047]; regulation of transcription, DNA-templated [GO:0006355]; regulation of translation [GO:0006417]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; siRNA binding [GO:0035197]; defense response to bacterium [GO:0042742]; defense response to virus [GO:0051607]; gene silencing by RNA [GO:0031047]; modulation by virus of host morphology or physiology [GO:0019048]; regulation of transcription, DNA-templated [GO:0006355]; regulation of translation [GO:0006417]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676]; gene silencing by RNA [GO:0031047] locus:2197550;,locus:2197545; AT1G31290,AT1G31280 Argonaute Protein argonaute 3 (OsAGO3),Protein argonaute 2 (OsAGO2),Os04g0615800 protein (Fragment) Q7XTS3,Q7XTS4,A0A0P0WER6 AGO3_ORYSJ,AGO2_ORYSJ,A0A0P0WER6_ORYSJ AGO3 Os04g0615800 LOC_Os04g52550 OSJNBa0008M17.12,AGO2 Os04g0615700 LOC_Os04g52540 OSJNBa0008M17.11,Os04g0615800 OSNPB_040615800 FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411DXYF Q9FGU1 Q9FGU1_ARATH At5g58030 (Gb|AAD34459.1) (SPP30-like protein) (Transport protein particle (TRAPP) component) R-ATH-204005;R-ATH-8876198; 21865 At5g58030 (Gb|AAD34459.1) (SPP30-like protein) (Transport protein particle (TRAPP) component) TRAPP complex [GO:0030008]; Golgi vesicle transport [GO:0048193] locus:2147770; AT5G58030 Trafficking protein particle complex subunit Os01g0708600 protein (SPP30-like) (cDNA clone:002-182-B01, full insert sequence) Q5N9C8 Q5N9C8_ORYSJ Os01g0708600 OsJ_03203 OSNPB_010708600 P0456F08.1 P0510F09.29 ENOG411DXYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA calcium and calcium calmodulin-dependent serine Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (OsCCaMK) (EC 2.7.11.17) Q6AVM3 CCAMK_ORYSJ CCAMK DMI3 Os05g0489900 LOC_Os05g41090 OJ1119_H02.20 OsJ_19014 FUNCTION: Calcium- and calmodulin-dependent protein kinase required for mycorrhizal symbiosis. {ECO:0000269|PubMed:16673936, ECO:0000269|PubMed:17965173, ECO:0000269|PubMed:18852152}. MISCELLANEOUS: Can restore mycorrhizal and rhizobial symbiosis and induces spontaneous nodulation in a Ljccamk mutant of Lotus japonicus. Can restore nodulation and mycorrhizal symbiosis to a Medicago truncatula dmi3 mutant. ENOG411DXYA BIN4 Q9FLU1,A0A1P8BCF0,F4KH77,A0A1P8BCE5,A0A1P8BCF3,F4KH76,F4KH79,F4KH75 BIN4_ARATH,A0A1P8BCF0_ARATH,F4KH77_ARATH,A0A1P8BCE5_ARATH,A0A1P8BCF3_ARATH,F4KH76_ARATH,F4KH79_ARATH,F4KH75_ARATH DNA-binding protein BIN4 (Protein BRASSINOSTEROID INSENSITIVE 4) (Protein MIDGET),Double-stranded DNA binding protein DISRUPTION PHENOTYPE: Plants show a severe dwarf phenotype. In bin4 mutants, a specific DNA damage repair checkpoint is activated preventing further progression of endoreplication cycles. {ECO:0000269|PubMed:18055605}. Severe dwarf; Small cotyledons; Short hypocotyl, roots, and petioles; Abnormal trichomes and root hairs; Increased ploidy levels due to endoreduplication; Insensitive to brassinosteroids-K. Sugimoto-Shirazu-2007 FUNCTION: Component of the DNA topoisomerase VI complex. Binds to DNA. Required for chromatin organization and progression of endoreduplication cycles. The loss of BIN4 activates the ATM- and ATR-dependent DNA damage responses in postmitotic cells and induces the ectopic expression of the mitotic G2/M-specific cyclin B1;1 gene in non-dividing cells. {ECO:0000269|PubMed:17951446, ECO:0000269|PubMed:18055605}. 49485,44406,49109,48865,48406,48622,49237,47175 DNA-binding protein BIN4 (Protein BRASSINOSTEROID INSENSITIVE 4) (Protein MIDGET),Double-stranded DNA binding protein DNA topoisomerase complex (ATP-hydrolyzing) [GO:0009330]; nucleus [GO:0005634]; double-stranded DNA binding [GO:0003690]; chromosome organization [GO:0051276]; DNA endoreduplication [GO:0042023]; epidermal cell differentiation [GO:0009913]; positive regulation of cell growth [GO:0030307]; root development [GO:0048364]; shoot system development [GO:0048367]; trichome morphogenesis [GO:0010090],DNA topoisomerase complex (ATP-hydrolyzing) [GO:0009330]; double-stranded DNA binding [GO:0003690]; DNA endoreduplication [GO:0042023] DEVELOPMENTAL STAGE: Ubiquitously expressed at low lwvels during the mitotic cell cycle. {ECO:0000269|PubMed:18055605}. TISSUE SPECIFICITY: Expressed in expanding cotyledons, vascular cells, elongating root cells, developing leaf trichomes, root and apical meristems and lateral root primordia. {ECO:0000269|PubMed:17951446, ECO:0000269|PubMed:18055605}. locus:2153939; AT5G24630 NA NA NA NA NA NA NA NA ENOG411DXYX Q66GP5,Q940S9,F4IN01,F4J4K6 Q66GP5_ARATH,Q940S9_ARATH,F4IN01_ARATH,F4J4K6_ARATH At2g42230 (C-CAP/cofactor C-like domain-containing protein) (Uncharacterized protein At2g42230),AT3g57890/T10K17_100 (Tubulin binding cofactor C domain-containing protein),C-CAP/cofactor C-like domain-containing protein,Tubulin binding cofactor C domain-containing protein 62377,62779,45453,67029 At2g42230 (C-CAP/cofactor C-like domain-containing protein) (Uncharacterized protein At2g42230),AT3g57890/T10K17_100 (Tubulin binding cofactor C domain-containing protein),C-CAP/cofactor C-like domain-containing protein,Tubulin binding cofactor C domain-containing protein cytosol [GO:0005829] locus:2060005;,locus:2095753; AT2G42230,AT3G57890 TBCC domain-containing protein 1-like Os02g0194800 protein (Tubulin-specific chaperone C-like protein) (cDNA clone:J023108L07, full insert sequence),Os06g0614300 protein (Tubulin-specific chaperone C-like) Q6H7Q8,Q69T18 Q6H7Q8_ORYSJ,Q69T18_ORYSJ Os02g0194800 Os02g0194800 OJ1225_F07.5-1 OSNPB_020194800,Os06g0614300 OSNPB_060614300 P0417G12.32 P0691E09.8 ENOG411DXYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3-ketoacyl-coa synthase Os02g0731900 protein (Fragment) A0A0N7KG16 A0A0N7KG16_ORYSJ Os02g0731900 OSNPB_020731900 ENOG411DXYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase Os06g0299300 protein (Putative b-keto acyl reductase) (cDNA clone:001-017-G10, full insert sequence) (cDNA clone:J013113L03, full insert sequence),Os06g0299200 protein (Putative b-keto acyl reductase),Os06g0299100 protein (Putative b-keto acyl reductase) (cDNA clone:J013073H04, full insert sequence),Os06g0299600 protein,Os06g0298700 protein Q5ZA47,Q5ZA49,Q5ZA50,A0A0P0WVX3,A0A0P0WVK1 Q5ZA47_ORYSJ,Q5ZA49_ORYSJ,Q5ZA50_ORYSJ,A0A0P0WVX3_ORYSJ,A0A0P0WVK1_ORYSJ Os06g0299300 Os06g0299300 OSNPB_060299300 P0501G08.16,Os06g0299200 Os06g0299200 OSNPB_060299200 P0501G08.13,Os06g0299100 Os06g0299100 OsJ_21060 OSNPB_060299100 P0501G08.12,Os06g0299600 OSNPB_060299600,Os06g0298700 OSNPB_060298700 ENOG411DXYU TOC90,Toc90 Q6S5G3,F4K480 TOC90_ARATH,F4K480_ARATH Translocase of chloroplast 90, chloroplastic (AtToc90) (EC 3.6.5.-) (90 kDa chloroplast outer envelope protein) (Plastid protein import 4),Avirulence induced gene (AIG1) family protein FUNCTION: GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast. {ECO:0000269|PubMed:15284497}. 3.6.5.- 89329,75142 Translocase of chloroplast 90, chloroplastic (AtToc90) (EC 3.6.5.-) (90 kDa chloroplast outer envelope protein) (Plastid protein import 4),Avirulence induced gene (AIG1) family protein chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; protein targeting to chloroplast [GO:0045036],GTP binding [GO:0005525] TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers, and roots. {ECO:0000269|PubMed:15273297}. locus:2149204; AT5G20300 translocase of chloroplast 90 Os12g0197400 protein (Fragment) A0A0P0Y7V1 A0A0P0Y7V1_ORYSJ Os12g0197400 OSNPB_120197400 ENOG411DXYT PER56 Q9LXG3 PER56_ARATH Peroxidase 56 (Atperox P56) (EC 1.11.1.7) (ATP33) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT5G15180-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 36225 Peroxidase 56 (Atperox P56) (EC 1.11.1.7) (ATP33) extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979] locus:2150946; AT5G15180 peroxidase Peroxidase (EC 1.11.1.7) Q7XHY0,Q5U1P4,Q8GVN8 Q7XHY0_ORYSJ,Q5U1P4_ORYSJ,Q8GVN8_ORYSJ P0681F05.131-2 Os07g0531400 OSNPB_070531400,prx49 LOC_Os03g36560 Os03g0563600 OSNPB_030563600,P0681F05.131-1 prx104 Os07g0531400 OsJ_24541 OSNPB_070531400 ENOG411DXYR PGMP Q9SCY0 PGMP_ARATH Phosphoglucomutase, chloroplastic (PGM) (EC 5.4.2.2) (Glucose phosphomutase) deficient in starch no other phenotypic effect. Low starch levels-T. Caspar-2000 FUNCTION: This enzyme participates in both the breakdown and synthesis of glucose. {ECO:0000250}. MetaCyc:AT5G51820-MONOMER; R-ATH-3322077;R-ATH-6798695;R-ATH-70221;R-ATH-70370; 5.4.2.2; 5.4.2.2 67989 Phosphoglucomutase, chloroplastic (PGM) (EC 5.4.2.2) (Glucose phosphomutase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; stromule [GO:0010319]; magnesium ion binding [GO:0000287]; phosphoglucomutase activity [GO:0004614]; carbohydrate metabolic process [GO:0005975]; detection of gravity [GO:0009590]; galactose catabolic process [GO:0019388]; glucose metabolic process [GO:0006006]; glycogen biosynthetic process [GO:0005978]; response to cold [GO:0009409]; starch biosynthetic process [GO:0019252] locus:2165351; AT5G51820 phosphoglucomutase Os10g0189100 protein (Phosphoglucomutase, chloroplast, putative, expressed) (cDNA clone:J013000K21, full insert sequence) Q33AE4 Q33AE4_ORYSJ LOC_Os10g11140 Os10g0189100 OsJ_30930 OSNPB_100189100 ENOG411DXYQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA phosphatase 2C Probable protein phosphatase 2C 8 (OsPP2C08) (EC 3.1.3.16),Protein phosphatase 2C 51 (OsPP2C51) (EC 3.1.3.16),Os05g0572700 protein Q5SN75,Q65XK7,A0A0P0WQH4 P2C08_ORYSJ,P2C51_ORYSJ,A0A0P0WQH4_ORYSJ Os01g0656200 LOC_Os01g46760 OSJNBa0049H05.30,PP2C51 Os05g0572700 LOC_Os05g49730 OJ1735_C10.11 OsJ_018833 OsJ_19620,Os05g0572700 OSNPB_050572700 FUNCTION: Protein phosphatase that acts as positive regulator of seed germination. Involved in the positive regulation of alpha-amylase gene expression. Acts as negative regulator of abscisic acid-mediated responses. May function directly by dephosphorylating ABI5 and suppressing its activity. {ECO:0000269|PubMed:28000033}. ENOG411DXYP PME52 O04953 PME52_ARATH Putative pectinesterase 52 (PE 52) (EC 3.1.1.11) (Pectin methylesterase 52) (AtPME52) FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT5G26810-MONOMER; 3.1.1.11 32350 Putative pectinesterase 52 (PE 52) (EC 3.1.1.11) (Pectin methylesterase 52) (AtPME52) cell wall [GO:0005618]; extracellular region [GO:0005576]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; cell wall modification [GO:0042545]; pectin catabolic process [GO:0045490] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707}. locus:2148508; AT5G26810 pectinesterase NA NA NA NA NA NA NA ENOG411DZ1A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF300 MAP kinase-activating protein C22orf5, putative, expressed (Os03g0827600 protein) (Putative organic solute transporter) (cDNA clone:001-041-A10, full insert sequence) (cDNA clone:J013088J18, full insert sequence),Organic solute transporter-like (Os07g0244300 protein) (cDNA clone:J013149E04, full insert sequence) Q10B77,Q8H5Q5 Q10B77_ORYSJ,Q8H5Q5_ORYSJ Os03g0827600 LOC_Os03g61210 OsJ_13206 OSJNBa0010E04.5 OSNPB_030827600,OJ1341_A08.136 Os07g0244300 OJ1058_C08.2 OSNPB_070244300 ENOG411DZ1E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glycerol-3-phosphate acyltransferase Os05g0457800 protein Q0DHL8 Q0DHL8_ORYSJ Os05g0457800 Os05g0457800 OSNPB_050457800 ENOG411DZ1D RER1A,RER1B,RER1C,ATRER1C1 O48670,O48671,Q9ZWI7,F4ILI9 RER1A_ARATH,RER1B_ARATH,RER1C_ARATH,F4ILI9_ARATH Protein RER1A (AtRER1A),Protein RER1B (AtRER1B),Protein RER1C (AtRER1C),Rer1 family protein FUNCTION: Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. {ECO:0000250}.,FUNCTION: Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. {ECO:0000256|PIRNR:PIRNR016013}. 21977,22418,24404,24275 Protein RER1A (AtRER1A),Protein RER1B (AtRER1B),Protein RER1C (AtRER1C),Rer1 family protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],cis-Golgi network [GO:0005801]; endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],integral component of membrane [GO:0016021]; retrograde vesicle-mediated transport, Golgi to ER [GO:0006890],integral component of membrane [GO:0016021] locus:2136373;,locus:2049354;,locus:2058583; AT4G39220,AT2G21600,AT2G23310 retrograde vesicle-mediated transport Golgi to ER Protein RER1,Os12g0439700 protein Q657Y8,Q5Z9I1,B9GCY9 Q657Y8_ORYSJ,Q5Z9I1_ORYSJ,B9GCY9_ORYSJ Os01g0106200 OsJ_00051 OSNPB_010106200 P0005A05.16,Os06g0708300 OsJ_22612 OSNPB_060708300 P0621D05.43 P0655A07.3,Os12g0439700 OsJ_35965 OSNPB_120439700 FUNCTION: Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. {ECO:0000256|PIRNR:PIRNR016013}. ENOG411DZ1G Q5PNU5 Q5PNU5_ARATH At3g25160 (ER lumen protein retaining receptor family protein) 31032 At3g25160 (ER lumen protein retaining receptor family protein) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ER retention sequence binding [GO:0046923]; protein retention in ER lumen [GO:0006621] locus:2090255; AT3G25160 ER lumen protein retaining NA NA NA NA NA NA NA ENOG411DZ1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os08g0484200 protein (Putative RING-H2 zinc finger protein) (cDNA, clone: J075096L14, full insert sequence),Os09g0468300 protein Q6YTT7,A0A0P0XPJ3 Q6YTT7_ORYSJ,A0A0P0XPJ3_ORYSJ Os08g0484200 OJ1111_H02.30 OSNPB_080484200 P0419H09.11,Os09g0468300 OSNPB_090468300 ENOG411DZ1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Expressed protein (Os11g0593100 protein) Q2R1U0 Q2R1U0_ORYSJ Os11g0593100 LOC_Os11g38070 Os11g0593100 OSNPB_110593100 ENOG411DZ1H MYB17 Q9M2D9 MYB17_ARATH Transcription factor MYB41 (Myb-related protein 41) (AtMYB41) (Protein LATE MERISTEM IDENTITY 2) DISRUPTION PHENOTYPE: Meristem identity phenotype; increased number of cauline leaves and secondary inflorescences. {ECO:0000269|PubMed:21750030}. FUNCTION: Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. 33290 Transcription factor MYB41 (Myb-related protein 41) (AtMYB41) (Protein LATE MERISTEM IDENTITY 2) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; flower development [GO:0009908]; regulation of flower development [GO:0009909]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. locus:2098906; AT3G61250 Transcription factor NA NA NA NA NA NA NA ENOG411DZ1K CELLULOSE SYNTHASE LIKE B4 F4I348,Q9FXF8,F4I352,F4I350 F4I348_ARATH,Q9FXF8_ARATH,F4I352_ARATH,F4I350_ARATH Magnesium transporter CorA-like family protein,F1N18.13 protein (Magnesium transporter CorA-like family protein) 61054,60635,52814,64942 Magnesium transporter CorA-like family protein,F1N18.13 protein (Magnesium transporter CorA-like family protein) integral component of membrane [GO:0016021]; membrane [GO:0016020]; metal ion transmembrane transporter activity [GO:0046873]; cation transmembrane transport [GO:0098655],integral component of membrane [GO:0016021]; metal ion transmembrane transporter activity [GO:0046873],integral component of membrane [GO:0016021] locus:2019292;,locus:2019282; AT1G29820,AT1G29830 CorA-like Mg2+ transporter protein Os01g0664100 protein Q5SN65 Q5SN65_ORYSJ Os01g0664100 OSNPB_010664100 P0003E08.7 ENOG411DZ1J SYP31 Q9FFK1 SYP31_ARATH Syntaxin-31 (AtSED5) (AtSYP31) FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. R-ATH-204005;R-ATH-5694530;R-ATH-6807878;R-ATH-6811438; 37311 Syntaxin-31 (AtSED5) (AtSYP31) cell plate [GO:0009504]; endosome [GO:0005768]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]; ER to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; vesicle docking [GO:0048278]; vesicle fusion [GO:0006906] locus:2166419; AT5G05760 syntaxin NA NA NA NA NA NA NA ENOG411DZ1M T19F6.14 Q9SGV6,O22985,A0A1P8B7K9 Q9SGV6_ARATH,O22985_ARATH,A0A1P8B7K9_ARATH At1g64590/F1N19_15 (F1N19.16) (NAD(P)-binding Rossmann-fold superfamily protein),AT4g24050/T19F6_40 (NAD(P)-binding Rossmann-fold superfamily protein) (Ribitol dehydrogenase isolog) (Uncharacterized protein AT4g24050),NAD(P)-binding Rossmann-fold superfamily protein ARA:AT1G64590-MONOMER;,ARA:AT4G24050-MONOMER; 36381,35840,30111 At1g64590/F1N19_15 (F1N19.16) (NAD(P)-binding Rossmann-fold superfamily protein),AT4g24050/T19F6_40 (NAD(P)-binding Rossmann-fold superfamily protein) (Ribitol dehydrogenase isolog) (Uncharacterized protein AT4g24050),NAD(P)-binding Rossmann-fold superfamily protein oxidoreductase activity [GO:0016491] locus:2019474;,locus:2134971; AT1G64590,AT4G24050 short-chain dehydrogenase Os03g0115700 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) (cDNA clone:J013107I12, full insert sequence),Os06g0129100 protein (Putative alcohol dehydrogenase PAN2) Q8GZV9,Q658H8 Q8GZV9_ORYSJ,Q658H8_ORYSJ OSJNBa0090O10.25 LOC_Os03g02460 Os03g0115700 OsJ_09167 OSNPB_030115700,Os06g0129100 OsJ_19979 OSNPB_060129100 P0538C01.13 ENOG411DZ1N UGT90A1 Q9ZVX4,Q1PDW8,A0A1P8AYT8 U90A1_ARATH,Q1PDW8_ARATH,A0A1P8AYT8_ARATH UDP-glycosyltransferase 90A1 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) ARA:AT2G16890-MONOMER;,ARA:AT5G14860-MONOMER; 2.4.1.- 53747,55425,47817 UDP-glycosyltransferase 90A1 (EC 2.4.1.-),Glycosyltransferase (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] locus:2039425;,locus:2185495; AT2G16890,AT5G14860 UDP-glucoronosyl and UDP-glucosyl transferase Glycosyltransferase (EC 2.4.1.-),Os09g0379400 protein Q7XVP1,Q6K2Q2,A0A0P0XK72,A0A0P0XM07 Q7XVP1_ORYSJ,Q6K2Q2_ORYSJ,A0A0P0XK72_ORYSJ,A0A0P0XM07_ORYSJ Os04g0305700 OSJNBa0023J03.6 OSNPB_040305700,Os09g0329200 OSJNBa0040N23.3 OSNPB_090329200 P0706E03.45,Os09g0330000 OSNPB_090330000,Os09g0379400 OSNPB_090379400 ENOG411DZ1Y MDH9.13 Q9FIH3 Q9FIH3_ARATH At5g42440 (Protein kinase superfamily protein) (Serine/threonine protein kinase-like protein) 40479 At5g42440 (Protein kinase superfamily protein) (Serine/threonine protein kinase-like protein) integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] locus:2162296; AT5G42440 STYKc Os11g0168600 protein (Os11g0168700 protein) (Fragment) C7J989 C7J989_ORYSJ Os11g0168700 Os11g0168600 OSNPB_110168600 ENOG411DZ1Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein kinase domain containing protein Os11g0694100 protein (Protein kinase domain containing protein, expressed) (Wall-associated protein kinase),Os11g0691600 protein,Os11g0691000 protein,Os11g0690332 protein,Os11g0690066 protein,Os11g0691100 protein,Os11g0691290 protein,Os11g0691400 protein,Os04g0220300 protein (Fragment),Os11g0691650 protein,Os11g0694200 protein,Os11g0691300 protein,Os11g0693700 protein,Os11g0691280 protein,Os11g0690733 protein,Os11g0691500 protein Q53QC7,Q0IR08,A0A0P0Y5F9,A0A0P0Y5J6,A0A0P0Y5F3,A0A0P0Y5K2,A0A0P0Y5Q8,A0A0P0Y5K6,A0A0P0W7Q8,A0A0N7KTD6,A0A0P0Y5N5,A0A0P0Y5G7,A0A0P0Y5L5,A0A0P0Y5G2,A0A0P0Y5G5,A0A0P0Y5S0 Q53QC7_ORYSJ,Q0IR08_ORYSJ,A0A0P0Y5F9_ORYSJ,A0A0P0Y5J6_ORYSJ,A0A0P0Y5F3_ORYSJ,A0A0P0Y5K2_ORYSJ,A0A0P0Y5Q8_ORYSJ,A0A0P0Y5K6_ORYSJ,A0A0P0W7Q8_ORYSJ,A0A0N7KTD6_ORYSJ,A0A0P0Y5N5_ORYSJ,A0A0P0Y5G7_ORYSJ,A0A0P0Y5L5_ORYSJ,A0A0P0Y5G2_ORYSJ,A0A0P0Y5G5_ORYSJ,A0A0P0Y5S0_ORYSJ Os11g0694100 LOC_Os11g47140 OSNPB_110694100,Os11g0691600 OSNPB_110691600,Os11g0691000 OSNPB_110691000,Os11g0690332 OSNPB_110690332,Os11g0690066 OSNPB_110690066,Os11g0691100 OSNPB_110691100,Os11g0691290 OSNPB_110691290,Os11g0691400 OSNPB_110691400,Os04g0220300 OSNPB_040220300,Os11g0691650 OSNPB_110691650,Os11g0694200 OSNPB_110694200,Os11g0691300 OSNPB_110691300,Os11g0693700 OSNPB_110693700,Os11g0691280 OSNPB_110691280,Os11g0690733 OSNPB_110690733,Os11g0691500 OSNPB_110691500 ENOG411DZ13 O82318 Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 106448 Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2043540; AT2G25790 Leucine-rich repeat receptor-like protein kinase NA NA NA NA NA NA NA ENOG411DZ15 SRF5,SRF4 Q6R2K1,Q6R2K2 SRF5_ARATH,SRF4_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 5 (Leucine-rich repeat receptor kinase-like protein SRF5),Protein STRUBBELIG-RECEPTOR FAMILY 4 (Leucine-rich repeat receptor kinase-like protein SRF4) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17397538}.,DISRUPTION PHENOTYPE: Plants show a reduction in leaf size, but no apparent defect in pollen development or fertility. {ECO:0000269|PubMed:17397538}. Small leaves-K. Schneitz-2007 FUNCTION: Acts as a direct positive regulator of leaf size but not leaf shape. {ECO:0000269|PubMed:17397538}. MISCELLANEOUS: Cannot functionally replace STRUBBELIG.; MISCELLANEOUS: Over-expression of SRF5 led to male-sterility in cv. Columbia but not in cv. Landsberg.,MISCELLANEOUS: Cannot functionally replace STRUBBELIG.; MISCELLANEOUS: Over-expression of SRF4 led to an increased leaf surface and to male-sterility in both cv. Landsberg and cv. Columbia. R-ATH-446652; 76945,74911 Protein STRUBBELIG-RECEPTOR FAMILY 5 (Leucine-rich repeat receptor kinase-like protein SRF5),Protein STRUBBELIG-RECEPTOR FAMILY 4 (Leucine-rich repeat receptor kinase-like protein SRF4) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468] TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:17397538}.,TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:17397538}. locus:2207280;,locus:2089210; AT1G78980,AT3G13065 strubbelig-receptor family Os09g0559900 protein Q0IZN0 Q0IZN0_ORYSJ Os09g0559900 OSNPB_090559900 ENOG411EIKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKG Q9ZVN8,B3H6T5 Q9ZVN8_ARATH,B3H6T5_ARATH T7A14.9 (UBA-like domain protein),UBA-like domain protein 18754,17844 T7A14.9 (UBA-like domain protein),UBA-like domain protein locus:2205518; AT1G05040 NA NA NA NA NA NA NA NA ENOG411EIKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0113700 protein,Os05g0417900 protein (Fragment) Q6YXU2,A0A0P0WML4 Q6YXU2_ORYSJ,A0A0P0WML4_ORYSJ Os08g0113700 OSNPB_080113700 P0427G12.6,Os05g0417900 OSNPB_050417900 ENOG411EIKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Divalent cation transporter NA NA NA NA NA NA NA ENOG411EIK2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIK0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIK7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIK6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA reticuline oxidase-like protein-like NA NA NA NA NA NA NA ENOG411EIK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIK4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB3X LECRK14,LECRK13 Q9M3D7,Q9M3D8 LRK14_ARATH,LRK13_ARATH Putative L-type lectin-domain containing receptor kinase I.4 (LecRK-I.4) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase I.3 (AtLecRK2) (LecRK-I.3) (EC 2.7.11.1) (Salt-responsive receptor protein kinase 1) DISRUPTION PHENOTYPE: Increased susceptibility to the fungus Alternaria brassicicola. {ECO:0000269|PubMed:25083911}. FUNCTION: Involved in resistance response to the pathogenic fungus Alternaria brassicicola. {ECO:0000269|PubMed:25083911}. 2.7.11.1 74097,73910 Putative L-type lectin-domain containing receptor kinase I.4 (LecRK-I.4) (EC 2.7.11.1),L-type lectin-domain containing receptor kinase I.3 (AtLecRK2) (LecRK-I.3) (EC 2.7.11.1) (Salt-responsive receptor protein kinase 1) integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cellular response to ethylene stimulus [GO:0071369]; cellular response to salt stress [GO:0071472]; defense response to fungus [GO:0050832]; protein autophosphorylation [GO:0046777] TISSUE SPECIFICITY: Mostly expressed in roots and flowers, and, to a lower extent, in leaves. {ECO:0000269|PubMed:15067507}. locus:2078342;,locus:2078337; AT3G45420,AT3G45410 lectin protein kinase family NA NA NA NA NA NA NA ENOG411EB3Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EB3P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EB3Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DIL domain Os10g0395100 protein (Fragment) Q0IXV8 Q0IXV8_ORYSJ Os10g0395100 OSNPB_100395100 ENOG411EB3M CYP78A8 A0A1P8AVN2,F4HS79 A0A1P8AVN2_ARATH,F4HS79_ARATH Cytochrome P450, family 78, subfamily A, polypeptide 8 60908,60315 Cytochrome P450, family 78, subfamily A, polypeptide 8 integral component of membrane [GO:0016021]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2035282; AT1G01190 electron carrier heme binding iron ion binding monooxygenase oxygen binding NA NA NA NA NA NA NA ENOG411EB3N XTH24 P24806 XTH24_ARATH Xyloglucan endotransglucosylase/hydrolase protein 24 (At-XTH24) (XTH-24) (EC 2.4.1.207) (Endo-xyloglucan transferase) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Xyloglucan endo-1,4-beta-D-glucanase) FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. May be required during development to modify the walls of cells under mechanical stress. 2.4.1.207; 2.4.1.207 30756 Xyloglucan endotransglucosylase/hydrolase protein 24 (At-XTH24) (XTH-24) (EC 2.4.1.207) (Endo-xyloglucan transferase) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Xyloglucan endo-1,4-beta-D-glucanase) apoplast [GO:0048046]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; xyloglucan:xyloglucosyl transferase activity [GO:0016762]; cell wall biogenesis [GO:0042546]; plant-type cell wall loosening [GO:0009828]; plant-type cell wall organization or biogenesis [GO:0071669]; xyloglucan metabolic process [GO:0010411] TISSUE SPECIFICITY: Highly expressed. Predominantly expressed in stems. Expressed in shoot apical meristems, also found in seedlings and meristems. {ECO:0000269|PubMed:11673616, ECO:0000269|PubMed:1840916}. locus:2128936; AT4G30270 xyloglucan xyloglucosyl transferase NA NA NA NA NA NA NA ENOG411EB3H ERDJ2B,ATERDJ2B,ATERDJ2A F4JIN3,A0A1P8B5T4,F4HQE1 DNJ29_ARATH,A0A1P8B5T4_ARATH,F4HQE1_ARATH DnaJ protein ERDJ2B (Chaperone protein dnaJ 29) (AtDjC29) (AtJ29) (Endoplasmic reticulum dnaJ domain-containing protein 2B) (AtERdj2B) (Translocation protein SEC63 homolog ERDJ2B),DnaJ / Sec63 Brl domains-containing protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:18718935}. Homozygotes have a WT phenotype,Reduced transmission through pollen. Pollen grains are viable but pollen germination is aberrant. Homozygotes cannot be recovered. Male gametophyte defective; Embryo defective (inferred)-S. Nishikawa-2008 FUNCTION: Required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane. {ECO:0000250}. R-ATH-381038; 74825,65733,66488 DnaJ protein ERDJ2B (Chaperone protein dnaJ 29) (AtDjC29) (AtJ29) (Endoplasmic reticulum dnaJ domain-containing protein 2B) (AtERdj2B) (Translocation protein SEC63 homolog ERDJ2B),DnaJ / Sec63 Brl domains-containing protein endoplasmic reticulum [GO:0005783]; integral component of endoplasmic reticulum membrane [GO:0030176]; plasma membrane [GO:0005886]; protein transporter activity [GO:0008565]; posttranslational protein targeting to membrane, translocation [GO:0031204],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; protein transporter activity [GO:0008565]; posttranslational protein targeting to membrane, translocation [GO:0031204] TISSUE SPECIFICITY: Expressed in leaves, flower buds and flowers. {ECO:0000269|PubMed:18718935}. locus:2127373; AT4G21180,AT1G79940 Sec63 NA NA NA NA NA NA NA ENOG411EB3J DIN11 F4IY03,Q84MB6,Q8H113,A0A178VKC2,A0A1I9LMM4,F4J0J9 DIOX1_ARATH,DIOX2_ARATH,DIN11_ARATH,A0A178VKC2_ARATH,A0A1I9LMM4_ARATH,F4J0J9_ARATH Probable 2-oxoglutarate-dependent dioxygenase At3g49630 (EC 1.14.11.-),Probable 2-oxoglutarate-dependent dioxygenase At3g50210 (EC 1.14.11.-),Probable 2-oxoglutarate-dependent dioxygenase DIN11 (EC 1.14.11.-) (Protein DARK-INDUCIBLE 11),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ARA:AT3G49620-MONOMER; 1.14.11.- 37456,37222,40697,37116,29606,27878 Probable 2-oxoglutarate-dependent dioxygenase At3g49630 (EC 1.14.11.-),Probable 2-oxoglutarate-dependent dioxygenase At3g50210 (EC 1.14.11.-),Probable 2-oxoglutarate-dependent dioxygenase DIN11 (EC 1.14.11.-) (Protein DARK-INDUCIBLE 11),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; cellular response to starvation [GO:0009267],dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872],metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] TISSUE SPECIFICITY: Expressed in senescent leaves. {ECO:0000269|PubMed:11240919}. locus:2114698;,locus:2074800;,locus:2114683; AT3G49630,AT3G50210,AT3G49620 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411EB3B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sterol methyltransferase C-terminal NA NA NA NA NA NA NA ENOG411DY89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Saposin-like type B region 2 Aspartic proteinase oryzasin-1 (EC 3.4.23.-),Os01g0663400 protein (Unnamed protein) (cDNA clone:J023016B15, full insert sequence),Os05g0567100 protein,Os01g0663400 protein (Fragment) Q42456,Q0JKM8,A0A0P0WR25,A0A0P0V679 ASPR1_ORYSJ,Q0JKM8_ORYSJ,A0A0P0WR25_ORYSJ,A0A0P0V679_ORYSJ Os05g0567100 LOC_Os05g49200 OJ1781_H11.11,Os01g0663400 Os01g0663400 OsJ_02912 OSNPB_010663400,Os05g0567100 OSNPB_050567100,Os01g0663400 OSNPB_010663400 FUNCTION: Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles. {ECO:0000250}. ENOG411DW98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CBS domain NA NA NA NA NA NA NA ENOG411DW99 Q9SZK4,C0Z2E1 Q9SZK4_ARATH,C0Z2E1_ARATH Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At4g38040) (Uncharacterized protein F20D10.160),AT4G38040 protein (Exostosin family protein) ARA:AT4G38040-MONOMER; 48963,46516 Exostosin family protein (Glycosyltransferase) (Uncharacterized protein At4g38040) (Uncharacterized protein F20D10.160),AT4G38040 protein (Exostosin family protein) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; transferase activity [GO:0016740] locus:2120933; AT4G38040 exostosin family Os02g0187200 protein (Putative pectin-glucuronyltransferase) (cDNA clone:J013030F22, full insert sequence),Os06g0638300 protein (Fragment) Q6ZIF8,A0A0P0WZ15 Q6ZIF8_ORYSJ,A0A0P0WZ15_ORYSJ Os02g0187200 Os02g0187200 OJ1073_F05.23 OJ1115_B01.34 OSNPB_020187200,Os06g0638300 OSNPB_060638300 ENOG411DW90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: UDP-GlcNAc beta-Gal beta-13-N-acetylglucosaminyltransferase Hexosyltransferase (EC 2.4.1.-) Q6L4F9 Q6L4F9_ORYSJ P0560C03.17 Os05g0552200 OsJ_19466 OSJNBa0079H23.12 OSNPB_050552200 ENOG411DW91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Di19 Protein DEHYDRATION-INDUCED 19 homolog 3 (OsDi19-3),Os01g0672400 protein Q5QMP3,A0A0P0V6E1 DI193_ORYSJ,A0A0P0V6E1_ORYSJ DI19-3 Os01g0672400 LOC_Os01g48190 OsJ_002873 OsJ_02966 P0007F06.11-1 P0485G01.1-1,Os01g0672400 OSNPB_010672400 ENOG411DW92 O82301,A0A1P8AX89 O82301_ARATH,A0A1P8AX89_ARATH Ubiquitin family protein (Uncharacterized protein At2g35360) (Uncharacterized protein At2g35360/T32F12.26),Ubiquitin family protein 25521,20983 Ubiquitin family protein (Uncharacterized protein At2g35360) (Uncharacterized protein At2g35360/T32F12.26),Ubiquitin family protein integral component of membrane [GO:0016021] locus:2062445; AT2G35360 Uncharacterized conserved domain (SAYSvFN) Os09g0573100 protein (cDNA clone:J023093B21, full insert sequence) Q5Z482 Q5Z482_ORYSJ Os09g0573100 B1130E07.15 OsJ_30445 OSNPB_090573100 ENOG411DW93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31 kDa ribonucleoprotein chloroplastic-like Os09g0565300 protein (Fragment),Os09g0565350 protein,Os01g0318900 protein A0A0P0XRG8,A0A0P0XRQ9,A0A0P0V288 A0A0P0XRG8_ORYSJ,A0A0P0XRQ9_ORYSJ,A0A0P0V288_ORYSJ Os09g0565300 OSNPB_090565300,Os09g0565350 OSNPB_090565350,Os01g0318900 OSNPB_010318900 ENOG411DW94 DTX20,DTX23,DTX21,DTX22 F4HPH2,Q8RXK1,Q8W488,F4HPH1,F4HPH0,F4HPH5 DTX20_ARATH,DTX23_ARATH,DTX21_ARATH,DTX22_ARATH,F4HPH0_ARATH,F4HPH5_ARATH Protein DETOXIFICATION 20 (AtDTX20) (Multidrug and toxic compound extrusion protein 20) (MATE protein 20),Protein DETOXIFICATION 23 (AtDTX23) (Multidrug and toxic compound extrusion protein 23) (MATE protein 23),Protein DETOXIFICATION 21 (AtDTX21) (Multidrug and toxic compound extrusion protein 21) (MATE protein 21),Protein DETOXIFICATION 22 (AtDTX22) (Multidrug and toxic compound extrusion protein 22) (MATE protein 22),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),MATE efflux family protein R-ATH-425366; 53505,54184,53701,53727,53752,43717 Protein DETOXIFICATION 20 (AtDTX20) (Multidrug and toxic compound extrusion protein 20) (MATE protein 20),Protein DETOXIFICATION 23 (AtDTX23) (Multidrug and toxic compound extrusion protein 23) (MATE protein 23),Protein DETOXIFICATION 21 (AtDTX21) (Multidrug and toxic compound extrusion protein 21) (MATE protein 21),Protein DETOXIFICATION 22 (AtDTX22) (Multidrug and toxic compound extrusion protein 22) (MATE protein 22),Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),MATE efflux family protein integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238]; drug transmembrane transport [GO:0006855],integral component of membrane [GO:0016021]; antiporter activity [GO:0015297]; drug transmembrane transporter activity [GO:0015238] locus:2038016;,locus:2037960;,locus:2206960;,locus:2037980; AT1G33100,AT1G33080,AT1G33110,AT1G33090 protein TRANSPARENT TESTA 12-like Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein),Os11g0129200 protein,Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) (Fragment),Os12g0125800 protein (Fragment),Os12g0125500 protein Q2QYB0,Q2RB46,A0A0P0XYF6,A0A0P0XYA6,A0A0P0Y6E2,A0A0N7KTI2 Q2QYB0_ORYSJ,Q2RB46_ORYSJ,A0A0P0XYF6_ORYSJ,A0A0P0XYA6_ORYSJ,A0A0P0Y6E2_ORYSJ,A0A0N7KTI2_ORYSJ Os12g0126000 LOC_Os12g03260 Os12g0126000 OsJ_35077 OSNPB_120126000,Os11g0126100 LOC_Os11g03240 Os11g0126100 OSNPB_110126100,Os11g0129200 OSNPB_110129200,Os11g0129000 OSNPB_110129000,Os12g0125800 OSNPB_120125800,Os12g0125500 OSNPB_120125500 ENOG411DW95 Q8LEB2,A0A1P8BEM2 ADHL6_ARATH,A0A1P8BEM2_ARATH Alcohol dehydrogenase-like 6 (EC 1.1.1.1),GroES-like zinc-binding dehydrogenase family protein ARA:AT5G24760-MONOMER; 1.1.1.1 40724,28534 Alcohol dehydrogenase-like 6 (EC 1.1.1.1),GroES-like zinc-binding dehydrogenase family protein cytoplasm [GO:0005737]; alcohol dehydrogenase (NAD) activity [GO:0004022]; zinc ion binding [GO:0008270],oxidation-reduction process [GO:0055114] locus:2184575; AT5G24760 Alcohol dehydrogenase-like Os02g0637700 protein (Putative alcohol dehydrogenase) (cDNA clone:J033069E14, full insert sequence),Os02g0637700 protein Q6H5W1,A0A0P0VM43 Q6H5W1_ORYSJ,A0A0P0VM43_ORYSJ OJ1581_H09.28-1 Os02g0637700 OsJ_07657 OSJNBa0014E22.22-1 OSNPB_020637700,Os02g0637700 OSNPB_020637700 ENOG411DW96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os12g0155300 protein (Fragment) A0A0P0Y742 A0A0P0Y742_ORYSJ Os12g0155300 OSNPB_120155300 ENOG411DW97 F18B3.160 Q9SVL1 Q9SVL1_ARATH At3g50880 (DNA glycosylase superfamily protein) (Putative DNA-3-methyladenine glycosidase) (EC 3.2.2.20) ARA:AT3G50880-MONOMER; 3.2.2.20 30292 At3g50880 (DNA glycosylase superfamily protein) (Putative DNA-3-methyladenine glycosidase) (EC 3.2.2.20) cytoplasm [GO:0005737]; protein-DNA complex [GO:0032993]; alkylated DNA binding [GO:0032131]; DNA-3-methyladenine glycosylase activity [GO:0008725]; DNA-7-methylguanine glycosylase activity [GO:0043916]; base-excision repair, AP site formation [GO:0006285]; DNA dealkylation involved in DNA repair [GO:0006307] locus:2077947; AT3G50880 ENDO3c NA NA NA NA NA NA NA ENOG411DW9H Q9FI63 Q9FI63_ARATH AT5g40470/K21I16_20 (RNI-like superfamily protein) 55043 AT5g40470/K21I16_20 (RNI-like superfamily protein) locus:2155647; AT5G40470 F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411DW9I PAO1 Q9FNA2 PAO1_ARATH Polyamine oxidase 1 (AtPAO1) (EC 1.5.3.16) (N(1)-acetylpolyamine oxidase) (Spermine oxidase) FUNCTION: Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine, norspermine and N(1)-acetylspermine. Substrate preference is norspermine > spermine > N(1)-acetylspermine. No activity detected when putrescine, spermidine or N(1)-acetylspermidine are used as substrates. Plays an important role in the regulation of polyamine intracellular concentration. {ECO:0000269|PubMed:16778015}. PATHWAY: Amine and polyamine degradation; spermine degradation. ARA:AT5G13700-MONOMER;MetaCyc:AT5G13700-MONOMER; 1.5.3.16; 1.5.3.16 52866 Polyamine oxidase 1 (AtPAO1) (EC 1.5.3.16) (N(1)-acetylpolyamine oxidase) (Spermine oxidase) flavin adenine dinucleotide binding [GO:0050660]; N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity [GO:0052895]; norspermine:oxygen oxidoreductase activity [GO:0052894]; polyamine oxidase activity [GO:0046592]; spermine:oxygen oxidoreductase (spermidine-forming) activity [GO:0052901]; polyamine catabolic process [GO:0006598]; spermine catabolic process [GO:0046208] TISSUE SPECIFICITY: Expressed at very low levels in leaves, stems and inflorescences. {ECO:0000269|PubMed:16778015}. locus:2173219; AT5G13700 Polyamine oxidase NA NA NA NA NA NA NA ENOG411DW9J T29H11_70 Q9SJM9,Q9STM1,A0A1I9LMU3,A0A1P8ATY9,A0A1P8AZZ2 Q9SJM9_ARATH,Q9STM1_ARATH,A0A1I9LMU3_ARATH,A0A1P8ATY9_ARATH,A0A1P8AZZ2_ARATH Alpha/beta-Hydrolases superfamily protein (Expressed protein),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At3g48410) (Uncharacterized protein T29H11_70),Alpha/beta-Hydrolases superfamily protein 40459,43447,48644,27989,39183 Alpha/beta-Hydrolases superfamily protein (Expressed protein),Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At3g48410) (Uncharacterized protein T29H11_70),Alpha/beta-Hydrolases superfamily protein endoplasmic reticulum [GO:0005783]; hydrolase activity [GO:0016787],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],integral component of membrane [GO:0016021]; hydrolase activity [GO:0016787],hydrolase activity [GO:0016787] locus:2049415;,locus:2101160; AT2G36290,AT3G48410 hydrolase alpha beta fold family protein OSJNBa0073L04.5 protein (Os04g0411800 protein) (cDNA clone:J033081A11, full insert sequence),Hydrolase, alpha/beta fold protein-like (Os02g0532300 protein) (cDNA clone:001-041-E04, full insert sequence) (cDNA clone:006-212-H03, full insert sequence) (cDNA clone:006-310-D10, full insert sequence) (cDNA clone:J013119A16, full insert sequence),Os04g0412000 protein (Fragment) Q7XVG5,Q6ESF3,A0A0P0WA76 Q7XVG5_ORYSJ,Q6ESF3_ORYSJ,A0A0P0WA76_ORYSJ Os04g0411800 OSJNBa0073L04.5 OSNPB_040411800,P0605D08.22-1 Os02g0532300 OsJ_07003 OSNPB_020532300,Os04g0412000 OSNPB_040412000 ENOG411DW9K Q84JU5,Q6NQK3,F4JMN3 Q84JU5_ARATH,Q6NQK3_ARATH,F4JMN3_ARATH SNARE associated Golgi protein family (Uncharacterized protein At4g22850),At1g12450 (SNARE associated Golgi protein family) (Uncharacterized protein At1g12450),SNARE associated Golgi protein family 33187,33302,30888 SNARE associated Golgi protein family (Uncharacterized protein At4g22850),At1g12450 (SNARE associated Golgi protein family) (Uncharacterized protein At1g12450),SNARE associated Golgi protein family integral component of membrane [GO:0016021] locus:2132669;,locus:2034710; AT4G22850,AT1G12450 TVP38 TMEM64 family membrane protein Os07g0467600 protein Q69RL4,A0A0P0X5Q9 Q69RL4_ORYSJ,A0A0P0X5Q9_ORYSJ P0003B09.20 Os07g0467600 OSNPB_070467600,Os07g0467600 OSNPB_070467600 ENOG411DW9M QQT1 Q56XY2 Q56XY2_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein At5g22370) Embryo defective; Preglobular-D. Meinke-2002 FUNCTION: Small GTPase that is essential for the correct formation of the tangential divisions in early embryos. Associates with microtubule during mitosis and may function in the positioning of the division plane. May participate in the patterning of the early embryo at the octant-dermatogen transition (PubMed:17419841). Is crucial for normal development of the plant (PubMed:28475733). {ECO:0000269|PubMed:17419841, ECO:0000269|PubMed:28475733}. MISCELLANEOUS: Plants silencing QQT1 exhibit severe defects in growth and development, such as severely arrested stem growth, small size, formation of serrated leaves and abnormal structures of the shoot apical meristems. {ECO:0000269|PubMed:28475733}. 33565 P-loop containing nucleoside triphosphate hydrolases superfamily protein (Uncharacterized protein At5g22370) cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTPase activity [GO:0003924]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; RNA polymerase II complex import to nucleus [GO:0044376]; RNA polymerase III complex localization to nucleus [GO:1990022] locus:2176357; AT5G22370 GPN-loop GTPase 2-like Os02g0555000 protein (Putative purine nucleotide binding protein) (cDNA clone:J023101O11, full insert sequence) Q69ST5 Q69ST5_ORYSJ Os02g0555000 OsJ_07124 OSNPB_020555000 P0470G10.26 ENOG411DW9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-isomer specific 2-hydroxyacid dehydrogenase catalytic domain OSJNBb0085F13.12 protein (Os04g0107300 protein) (cDNA clone:J023059A13, full insert sequence),Os08g0445500 protein (Fragment),Os07g0597500 protein (Fragment),Os11g0229100 protein (Fragment) Q7XRA3,A0A0P0XGH5,A0A0P0X8A3,A0A0P0Y0R1 Q7XRA3_ORYSJ,A0A0P0XGH5_ORYSJ,A0A0P0X8A3_ORYSJ,A0A0P0Y0R1_ORYSJ Os04g0107300 OsJ_13522 OSJNBb0085F13.12 OSNPB_040107300,Os08g0445500 OSNPB_080445500,Os07g0597500 OSNPB_070597500,Os11g0229100 OSNPB_110229100 ENOG411DW9A Q94AB1 Q94AB1_ARATH AT3g14070/MAG2_2 (Mono-/di-acylglycerol lipase, N-terminalLipase, class 3) 70897 AT3g14070/MAG2_2 (Mono-/di-acylglycerol lipase, N-terminalLipase, class 3) hydrolase activity [GO:0016787]; lipid catabolic process [GO:0016042] locus:505006344; AT3G14075 lipase class 3 family protein Lipase class 3 protein-like (Os02g0780700 protein) (cDNA clone:001-117-E12, full insert sequence) Q6K832 Q6K832_ORYSJ Os02g0780700 Os02g0780700 OJ1369_G08.3 OsJ_08608 OSNPB_020780700 ENOG411DW9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Cytochrome P450 family protein, expressed (Os03g0594900 protein) (Putative cytochrome P450) (cDNA clone:J013170D06, full insert sequence),Cytochrome P450, putative (Os03g0593600 protein),Cytochrome P450 family protein, expressed (Os03g0594100 protein) (Putative cytochrome P450) (cDNA clone:002-183-A07, full insert sequence) Q851G9,Q6ATT7,Q851G2 Q851G9_ORYSJ,Q6ATT7_ORYSJ,Q851G2_ORYSJ Os03g0594900 LOC_Os03g39760 Os03g0594900 OSJNBb0042N11.19 OSNPB_030594900,OSJNBb0056O10.4 Os03g0593600 OSNPB_030593600,Os03g0594100 LOC_Os03g39690 Os03g0594100 OsJ_11617 OSJNBb0042N11.26 OSNPB_030594100 ENOG411DW9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0355900 protein (cDNA clone:001-111-C01, full insert sequence) Q5W6Y5 Q5W6Y5_ORYSJ Os05g0355900 OsJ_18201 OSJNBa0036C12.12 OSNPB_050355900 ENOG411DW9D F8F6_80 Q9LZC2 Q9LZC2_ARATH Emb|CAB85507.1 (Glutaredoxin family protein) (Uncharacterized protein F8F6_80) 43131 Emb|CAB85507.1 (Glutaredoxin family protein) (Uncharacterized protein F8F6_80) cell [GO:0005623]; plasmodesma [GO:0009506]; electron carrier activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]; cell redox homeostasis [GO:0045454] locus:2150640; AT5G03870 Glutaredoxin OJ000126_13.3 protein (OSJNBa0073L04.11 protein) (Os04g0412800 protein) (cDNA clone:001-019-B12, full insert sequence) Q7XVH0 Q7XVH0_ORYSJ Os04g0412800 Os04g0412800 OJ000126_13.3 OsJ_14734 OSJNBa0073L04.11 OSNPB_040412800 ENOG411DW9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein NA NA NA NA NA NA NA ENOG411DW9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhamnogalacturonate lyase family Os12g0131900 protein,Os11g0134100 protein A0A0N7KTJ0,A0A0P0XYL5 A0A0N7KTJ0_ORYSJ,A0A0P0XYL5_ORYSJ Os12g0131900 OSNPB_120131900,Os11g0134100 OSNPB_110134100 ENOG411DW9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 Formin-like protein 13 (OsFH13),Os07g0588200 protein (Fragment) Q0D519,A0A0P0X7Y6 FH13_ORYSJ,A0A0P0X7Y6_ORYSJ FH13 Os07g0588200 LOC_Os07g39920 OJ1047_C01.20 OSJNBb0005G07.114,Os07g0588200 OSNPB_070588200 ENOG411DW9X RUS5 B6IDH3 RUS5_ARATH Protein root UVB sensitive 5 57613 Protein root UVB sensitive 5 locus:2149745; AT5G01510 Vitamin B6 photo-protection and homoeostasis Os01g0141600 protein Q5ZEN6 Q5ZEN6_ORYSJ Os01g0141600 Os01g0141600 OSNPB_010141600 P0019D06.7 ENOG411DW9Y FBS4 Q5XF11,A0A1P8B598,A0A1P8B5C0 FB248_ARATH,A0A1P8B598_ARATH,A0A1P8B5C0_ARATH F-box protein At4g35930,F-box family protein 36281,36368,29795 F-box protein At4g35930,F-box family protein locus:2125374; AT4G35930 F-Box protein F-box domain containing protein, expressed (Os10g0438500 protein) (cDNA clone:J033118K01, full insert sequence) Q7XE39 Q7XE39_ORYSJ LOC_Os10g30280 Os10g0438500 OSNPB_100438500 ENOG411DW9Z RFC3 Q948R9 Q948R9_ARATH AT3g17170/K14A17_29 (RPS6-like protein) (Translation elongation factor EF1B/ribosomal protein S6 family protein) Abnormal lateral root formation in response to sucrose-K. Iba-2003 36276 AT3g17170/K14A17_29 (RPS6-like protein) (Translation elongation factor EF1B/ribosomal protein S6 family protein) ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation elongation factor activity [GO:0003746] locus:2086112; AT3G17170 ribosomal protein S6 Os12g0563200 protein (Fragment) Q0IML1 Q0IML1_ORYSJ Os12g0563200 Os12g0563200 OSNPB_120563200 ENOG411DW9P Q9LFV5 FK111_ARATH F-box/kelch-repeat protein At5g15710 50730 F-box/kelch-repeat protein At5g15710 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2143256; AT5G15710 F-box kelch-repeat protein OSJNBa0043A12.13 protein (Os04g0668600 protein) Q7XR72 Q7XR72_ORYSJ OSJNBa0043A12.13 Os04g0668600 OSNPB_040668600 ENOG411DW9Q F4JNF8,F4JNF7 F4JNF8_ARATH,F4JNF7_ARATH Structural maintenance of chromosomes protein 38403,36440 Structural maintenance of chromosomes protein locus:2130744; AT4G17240 NA Os05g0547100 protein,Os03g0750900 protein Q0DG88,A0A0P0W330 Q0DG88_ORYSJ,A0A0P0W330_ORYSJ Os05g0547100 Os05g0547100 OSNPB_050547100,Os03g0750900 OSNPB_030750900 ENOG411DW9R NUP160 Q9C811 NU160_ARATH Nuclear pore complex protein NUP160 (AtNUP160) (Nucleoporin 160) (Protein SUPPRESSOR OF AUXIN RESISTANCE 1) DISRUPTION PHENOTYPE: Pleiotropic phenotype with diverse growth defects and early flowering. Enhanced ethylene response and sensitivity to cold stress. Reduced EDS1 expression and enhanced susceptibility to virulent Pseudomonas bacteria and oomycete pathogens. Accumulation of nuclear poly(A)+ RNA and high-molecular weight SUMO conjugates. {ECO:0000269|PubMed:16751346, ECO:0000269|PubMed:17030626, ECO:0000269|PubMed:20872268, ECO:0000269|PubMed:22238449, ECO:0000269|PubMed:22288649}. FUNCTION: Contributes to the transfer of mature mRNA from the nucleus to the cytosol. Required for both R gene-mediated and basal disease resistance. RNA export seems to play a critical role in stress responses and regulation of plant growth and development. Required for proper expression of factors associated with auxin signaling. {ECO:0000269|PubMed:16751346, ECO:0000269|PubMed:17030626, ECO:0000269|PubMed:20872268, ECO:0000269|PubMed:22238449, ECO:0000269|PubMed:22288649, ECO:0000269|PubMed:22902705}. 168278 Nuclear pore complex protein NUP160 (AtNUP160) (Nucleoporin 160) (Protein SUPPRESSOR OF AUXIN RESISTANCE 1) nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; nuclear pore [GO:0005643]; nucleocytoplasmic transporter activity [GO:0005487]; defense response [GO:0006952]; poly(A)+ mRNA export from nucleus [GO:0016973]; response to auxin [GO:0009733]; response to cold [GO:0009409] TISSUE SPECIFICITY: Expressed in roots, stems, anthers, siliques and vascular tissues of cotyledons, leaves and hypocotyls. {ECO:0000269|PubMed:16751346, ECO:0000269|PubMed:17030626}. locus:2007023; AT1G33410 Nucleoporin Nup120/160 Os02g0142500 protein (Fragment),Os02g0142950 protein (Fragment) A0A0P0VEQ4,A0A0P0VES3 A0A0P0VEQ4_ORYSJ,A0A0P0VES3_ORYSJ Os02g0142500 OSNPB_020142500,Os02g0142950 OSNPB_020142950 ENOG411DW9S SEC15B,SEC15A F4JHH5,Q9LXX6 SC15B_ARATH,SC15A_ARATH Exocyst complex component SEC15B (AtSec15b),Exocyst complex component SEC15A (AtSec15a) (Probable exocyst complex component 6) DISRUPTION PHENOTYPE: Male gametophytic lethal due to defect in pollen germination and pollen tube growth. {ECO:0000269|PubMed:18492870}. FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. {ECO:0000269|PubMed:20870962}.,FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. R-ATH-5620916; 88371,90000 Exocyst complex component SEC15B (AtSec15b),Exocyst complex component SEC15A (AtSec15a) (Probable exocyst complex component 6) cell wall [GO:0005618]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; exocyst [GO:0000145]; extracellular exosome [GO:0070062]; membrane [GO:0016020]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; acceptance of pollen [GO:0060321]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; vesicle docking involved in exocytosis [GO:0006904],cytosol [GO:0005829]; exocyst [GO:0000145]; acceptance of pollen [GO:0060321]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; vesicle docking involved in exocytosis [GO:0006904] locus:2133244;,locus:2102644; AT4G02350,AT3G56640 exocyst complex component Exocyst complex component Q8S213,Q8S5T3 Q8S213_ORYSJ,Q8S5T3_ORYSJ Os01g0351300 B1051E10.57 OSNPB_010351300 P0463A02.27,Os03g0163500 OJ1607A12.3 LOC_Os03g06760 Os03g0163500 OJ1123F12.17 OsJ_09519 OSNPB_030163500 FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. {ECO:0000256|PIRNR:PIRNR025007}. ENOG411DW9T GPA1 P18064 GPA1_ARATH Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) DISRUPTION PHENOTYPE: Hypersensitive to abscisic acid (ABA) and to the lipid metabolite, sphingosine-1-phosphate (S1P), a transducer of the ABA signal, but hyposensitive to gibberellins and brassinosteroids. Hypersensitivity to ABA and glucose (Glc) during and after seed germination. Altered response to blue light (BL). Abnormal roots architecture; more auxin-induced lateral roots. {ECO:0000269|PubMed:16415218, ECO:0000269|PubMed:16581874, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:18499742, ECO:0000269|PubMed:20862254}. Plants homozygous for G&,Reduced cell division throughout development; increase in cell expansion compensates the reduction in cell division; light-grown plants exhibit a rotundifolia-like leaf shape (round leaves); dark-grown seedlings have short hypocotyls (because of a reduced number of elongated cells) and open hooks typical of light-irradiated seedlings; roots and cotyledons have the appearance of dark-grown wild type; reduced brassinolide responsiveness; stomatal opening is insensitive to inhibition by ABA and the rate of water loss is greater than from wild type.,show less sensitivity to ozone damage than wild-type Col-0 plants.,Similar to the agb1-2 single mutant in resistance to tunicamycin.,ABA-inhibition of stomatal opening reduced.,The defect exhibited by the double mutant in ABA-induced stomatal closure was similar to that exhibited by both single mutants. Low pollen germination rate; Short pollen tubes; Homozygotes are viable: Short hypocotyl; Large leaf cells; Short roots in response to auxin-A. Jones-2001 FUNCTION: Exhibits a fast rate of basal nucleotide exchange. Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. Together with GCR1, may regulate the cell cycle via a signaling cascade that uses phosphatidylinositol-specific phospholipase C (PI-PLC) as an effector and inositol 1,4,5-trisphosphate (IP(3)) as a second messenger. Promotes abscisic acid (ABA) responses in guard cells. But, together with GCR1 and GB1, acts as a negative regulator of ABA during seed germination and early seedling development. Involved in the blue light (BL) signaling. Together with GCR1 and ADT3, required for BL-mediated synthesis of phenylpyruvate and subsequently of phenylalanine (Phe), in etiolated seedlings. Modulates root architecture (e.g. lateral root formation). Negatively regulated by RGS1. {ECO:0000269|PubMed:15155892, ECO:0000269|PubMed:16415218, ECO:0000269|PubMed:16581874, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:20862254, ECO:0000269|PubMed:21304159}. ARA:AT2G26300-MONOMER; R-ATH-112043;R-ATH-202040;R-ATH-2514859;R-ATH-399997;R-ATH-416476;R-ATH-416482;R-ATH-418555;R-ATH-434316; 44546 Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) endoplasmic reticulum membrane [GO:0005789]; heterotrimeric G-protein complex [GO:0005834]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; channel regulator activity [GO:0016247]; G-protein beta/gamma-subunit complex binding [GO:0031683]; G-protein coupled receptor binding [GO:0001664]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; GTPase inhibitor activity [GO:0005095]; metal ion binding [GO:0046872]; signal transducer activity [GO:0004871]; abscisic acid-activated signaling pathway [GO:0009738]; adenylate cyclase-modulating G-protein coupled receptor signaling pathway [GO:0007188]; blue light signaling pathway [GO:0009785]; cell death [GO:0008219]; cellular response to abscisic acid stimulus [GO:0071215]; G-protein coupled receptor signaling pathway, coupled to S1P second messenger [GO:0001789]; gibberellic acid mediated signaling pathway [GO:0009740]; L-phenylalanine biosynthetic process [GO:0009094]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; reactive oxygen species metabolic process [GO:0072593]; regulation of cell proliferation [GO:0042127]; regulation of stomatal movement [GO:0010119]; response to glucose [GO:0009749]; response to low fluence blue light stimulus by blue low-fluence system [GO:0010244]; seed germination [GO:0009845]; thylakoid membrane organization [GO:0010027]; tyrosine biosynthetic process [GO:0006571] TISSUE SPECIFICITY: More abundant in roots and/or leaves. {ECO:0000269|PubMed:14500984}. locus:2005529; AT2G26300 G protein alpha subunit Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) (Protein Daikoku dwarf) (Protein Dwarf1),Os05g0333200 protein,Os05g0341300 protein (Fragment) Q0DJ33,A0A0P0WKZ0,A0A0P0WL10 GPA1_ORYSJ,A0A0P0WKZ0_ORYSJ,A0A0P0WL10_ORYSJ GPA1 D1 GA1 RGA1 Os05g0333200 LOC_Os05g26890 OJ1005_D04.15 OSJNBa0049D13.1,Os05g0333200 OSNPB_050333200,Os05g0341300 OSNPB_050341300 DISRUPTION PHENOTYPE: Dwarf plants and small seeds (PubMed:10377457, PubMed:10468600). Short internodes, leaves and panicles (PubMed:10377457). {ECO:0000269|PubMed:10377457, ECO:0000269|PubMed:10468600}. FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems (Probable). May function in a signal transduction pathway required for normal growth and development of internodes, leaves, panicles and seeds (PubMed:10377457). Involved in gibberellin signal transduction (PubMed:10468600, PubMed:11027362). Involved in R gene-mediated disease resistance. Functions upstream of the small GTPase RAC1 in the early steps of signaling (PubMed:12237405). Involved in brassinosteroid (BR) response. May not be a signaling molecule in BRI1-meditated perception or transduction (PubMed:17117160, PubMed:19036785). Acts together with the E3 ubiquitin ligase TUD1 to mediate a BR signaling pathway that affects plant growth and development (PubMed:23526892). {ECO:0000269|PubMed:10377457, ECO:0000269|PubMed:10468600, ECO:0000269|PubMed:11027362, ECO:0000269|PubMed:12237405, ECO:0000269|PubMed:17117160, ECO:0000269|PubMed:19036785, ECO:0000269|PubMed:23526892, ECO:0000305}. ENOG411DW9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF231 Os06g0272850 protein (Fragment),Os06g0266000 protein (Fragment) A0A0P0WV53,A0A0P0WVJ5 A0A0P0WV53_ORYSJ,A0A0P0WVJ5_ORYSJ Os06g0272850 OSNPB_060272850,Os06g0266000 OSNPB_060266000 ENOG411DW9V Q94CJ8,Q9C8K4,A0A1P8BFW7 C3H55_ARATH,Q9C8K4_ARATH,A0A1P8BFW7_ARATH Zinc finger CCCH domain-containing protein 55 (AtC3H55),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g51520) (Uncharacterized protein F5D21.15),CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 71960,46871,75866 Zinc finger CCCH domain-containing protein 55 (AtC3H55),RNA-binding (RRM/RBD/RNP motifs) family protein (Uncharacterized protein At1g51520) (Uncharacterized protein F5D21.15),CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein DNA binding [GO:0003677]; metal ion binding [GO:0046872]; RNA binding [GO:0003723],RNA binding [GO:0003723],metal ion binding [GO:0046872]; RNA binding [GO:0003723] locus:505006612; AT5G12440,AT1G51520 zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411DW9W Q9LFP5,Q9SRH4 PLY19_ARATH,PLY7_ARATH Probable pectate lyase 19 (EC 4.2.2.2),Probable pectate lyase 7 (EC 4.2.2.2) PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5. ARA:AT5G15110-MONOMER;,ARA:AT3G01270-MONOMER; 4.2.2.2 53851,53855 Probable pectate lyase 19 (EC 4.2.2.2),Probable pectate lyase 7 (EC 4.2.2.2) metal ion binding [GO:0046872]; pectate lyase activity [GO:0030570]; pectin catabolic process [GO:0045490] locus:2100247; AT5G15110,AT3G01270 Pectate lyase Pectate lyase (EC 4.2.2.2),Os06g0584000 protein (Fragment) Q5VP91,Q6H8B0,A0A0P0WY32 Q5VP91_ORYSJ,Q6H8B0_ORYSJ,A0A0P0WY32_ORYSJ Os06g0583900 OSNPB_060583900 P0498C03.34,Os02g0214400 Os02g0214400 OJ1006_D05.16 OSNPB_020214400,Os06g0584000 OSNPB_060584000 ENOG411EB38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EB35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411DY8D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine-rich repeat-like protein (Os02g0616100 protein) (cDNA clone:001-007-A03, full insert sequence) (cDNA clone:001-012-E07, full insert sequence) (cDNA clone:001-013-G07, full insert sequence) (cDNA clone:001-013-H06, full insert sequence) (cDNA clone:002-149-H04, full insert sequence) (cDNA clone:006-306-D08, full insert sequence) (cDNA clone:006-306-G04, full insert sequence) (cDNA clone:006-310-C05, full insert sequence),Os02g0616100 protein,Os02g0616100 protein (Fragment) Q6K8U3,B9F131,A0A0P0VLS4,A0A0P0VLV5 Q6K8U3_ORYSJ,B9F131_ORYSJ,A0A0P0VLS4_ORYSJ,A0A0P0VLV5_ORYSJ Os02g0616100 OJ1792_D02.5-1 OSNPB_020616100,Os02g0616100 OsJ_07530 OSNPB_020616100,Os02g0616100 OSNPB_020616100 ENOG411ED4V F1I16_220,F1I16_60 Q9SQQ7,Q9LU95,Q9M044,Q9M057 Q9SQQ7_ARATH,Q9LU95_ARATH,Q9M044_ARATH,Q9M057_ARATH Pyruvate kinase (EC 2.7.1.40) PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5. {ECO:0000256|RuleBase:RU000504}. ARA:AT3G04050-MONOMER;,ARA:AT3G25960-MONOMER;,ARA:AT3G55810-MONOMER;,ARA:AT3G55650-MONOMER; R-ATH-6798695;R-ATH-70171; 2.7.1.40 55291,53776,52908,54982 Pyruvate kinase (EC 2.7.1.40) cytoplasm [GO:0005737]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096],cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]; glycolytic process [GO:0006096] locus:2095953;,locus:2092085;,locus:2078956;,locus:2078966; AT3G04050,AT3G25960,AT3G55810,AT3G55650 Pyruvate kinase NA NA NA NA NA NA NA ENOG411ED4U HSP70-9 Q8GUM2 HSP7I_ARATH Heat shock 70 kDa protein 9, mitochondrial (Heat shock protein 70-9) (AtHsp70-9) (Mitochondrial heat shock protein 70-1) (mtHsc70-1) FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. 73075 Heat shock 70 kDa protein 9, mitochondrial (Heat shock protein 70-9) (AtHsp70-9) (Mitochondrial heat shock protein 70-1) (mtHsc70-1) cell wall [GO:0005618]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; zinc ion binding [GO:0008270]; protein folding [GO:0006457]; response to cadmium ion [GO:0046686]; response to cytokinin [GO:0009735]; response to salt stress [GO:0009651] locus:2121022; AT4G37910 mitochondrial heat shock protein 70-1 NA NA NA NA NA NA NA ENOG411ED4Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid desaturase NA NA NA NA NA NA NA ENOG411ED4X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function NA NA NA NA NA NA NA ENOG411ED4F O49301 O49301_ARATH Auxin-responsive GH3 family protein (T26J12.7 protein) ARA:GQT-2366-MONOMER; R-ATH-6798695; 65618 Auxin-responsive GH3 family protein (T26J12.7 protein) locus:2201170; AT1G23160 Auxin-responsive GH3 family protein NA NA NA NA NA NA NA ENOG411ED4D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Transposase_11 Os06g0226000 protein (Fragment) Q0DDF8 Q0DDF8_ORYSJ Os06g0226000 Os06g0226000 OSNPB_060226000 ENOG411ED4B BGLU25 O82772 BGL25_ARATH Probable inactive beta-glucosidase 25 (AtBGLU25) ARA:AT3G03640-MONOMER; R-ATH-189085; 59807 Probable inactive beta-glucosidase 25 (AtBGLU25) endoplasmic reticulum [GO:0005783]; beta-glucosidase activity [GO:0008422]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657] locus:2096449; AT3G03640 Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411ED4A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411ED4N Q4V3B4,Q9FIN3 Q4V3B4_ARATH,Q9FIN3_ARATH At3g49350 (GTPase activating-like protein) (Ypt/Rab-GAP domain of gyp1p superfamily protein),At5g24390 (GTPase activator-like protein of Rab-like small GTPases) (Ypt/Rab-GAP domain of gyp1p superfamily protein) R-ATH-8854214; 61791,60632 At3g49350 (GTPase activating-like protein) (Ypt/Rab-GAP domain of gyp1p superfamily protein),At5g24390 (GTPase activator-like protein of Rab-like small GTPases) (Ypt/Rab-GAP domain of gyp1p superfamily protein) endomembrane system [GO:0012505]; intracellular [GO:0005622]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]; activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; regulation of vesicle fusion [GO:0031338] locus:2082901;,locus:2152901; AT3G49350,AT5G24390 RabGAP TBC domain-containing protein NA NA NA NA NA NA NA ENOG411ED4K Q9C8P4,Q9LK87,A0A1P8APD3,F4HYC6,F4HYC4,F4HV07,F4IXR7 Q9C8P4_ARATH,Q9LK87_ARATH,A0A1P8APD3_ARATH,F4HYC6_ARATH,F4HYC4_ARATH,F4HV07_ARATH,F4IXR7_ARATH Uncharacterized protein F12A4.5,Uncharacterized protein 17079,29470,22677,18183,20792,20875,28165 Uncharacterized protein F12A4.5,Uncharacterized protein locus:2008663;,locus:2008678;,locus:504956095;,locus:2009243;,locus:2086460; AT1G35410,AT1G35400,AT1G35365,AT1G34560,AT3G27900 Protein of unknown function (DUF1184) NA NA NA NA NA NA NA ENOG411DY8N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411ED49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Partial alpha/beta-hydrolase lipase region NA NA NA NA NA NA NA ENOG411ED48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLATZ transcription factor NA NA NA NA NA NA NA ENOG411EJD2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411EJD5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA polymerase Rpb1 domain 1 Os09g0555187 protein A0A0P0XQV4 A0A0P0XQV4_ORYSJ Os09g0555187 OSNPB_090555187 ENOG411EJD7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: glycine-rich protein Os06g0326200 protein A0A0P0WW22 A0A0P0WW22_ORYSJ Os06g0326200 OSNPB_060326200 ENOG411EJD6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Salt stress-induced protein (Salt protein) (Protein lectin-like) (Protein mannose-binding lectin),Os01g0348800 protein (Fragment),Os01g0355100 protein (Os01g0355250 protein),Os06g0226050 protein (Putative SalT protein) Q0JMY8,Q0JMY9,Q0JMX0,Q67X24 SALT_ORYSJ,Q0JMY9_ORYSJ,Q0JMX0_ORYSJ,Q67X24_ORYSJ SALT ML Os01g0348900 LOC_Os01g24710 B1051E10.18 P0440D10.39,Os01g0348800 Os01g0348800 OSNPB_010348800,Os01g0355250 Os01g0355100 OsJ_01714 OSNPB_010355250,Os06g0226050 Os06g0226050 OsJ_20666 OSNPB_060226050 P0690H04.14 ENOG411EJDR Q9FYR2 Q9FYR2_ARATH At5g35090 17548 At5g35090 locus:2150366; AT5G35090 NA NA NA NA NA NA NA NA ENOG411EJDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BTB/POZ domain NA NA NA NA NA NA NA ENOG411EJDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon gag protein NA NA NA NA NA NA NA ENOG411EJDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJDI SPH19,SPH20,SPH18 B3H7A6,Q3E9W6,B3H730 SPH19_ARATH,SPH20_ARATH,SPH18_ARATH S-protein homolog 19,S-protein homolog 20,S-protein homolog 18 15162,15350,15422 S-protein homolog 19,S-protein homolog 20,S-protein homolog 18 extracellular region [GO:0005576]; rejection of self pollen [GO:0060320] locus:4515103448;,locus:504955469;,locus:4515103447; AT4G24974,AT4G24975,AT4G24973 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EJDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) NA NA NA NA NA NA NA ENOG411EJDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dual specificity phosphatase catalytic domain NA NA NA NA NA NA NA ENOG411EJDJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYJX Q9LS55,Q8VXZ2 Q9LS55_ARATH,Q8VXZ2_ARATH Heat-inducible transcription repressor (DUF639) (Uncharacterized protein At3g18350),Heat-inducible transcription repressor (DUF639) (Uncharacterized protein At1g48840) 78222,77431 Heat-inducible transcription repressor (DUF639) (Uncharacterized protein At3g18350),Heat-inducible transcription repressor (DUF639) (Uncharacterized protein At1g48840) integral component of membrane [GO:0016021] locus:2095032;,locus:2200844; AT3G18350,AT1G48840 Plant protein of unknown function (DUF639) Expressed protein (Os10g0127700 protein) (cDNA clone:J023149K11, full insert sequence),Os05g0264200 protein Q33B99,A0A0P0WK56 Q33B99_ORYSJ,A0A0P0WK56_ORYSJ Os10g0127700 LOC_Os10g03830 Os10g0127700 OSNPB_100127700,Os05g0264200 OSNPB_050264200 ENOG411DYJF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os12g0256900 protein Q0IP37 Q0IP37_ORYSJ Os12g0256900 Os12g0256900 OSNPB_120256900 ENOG411E94K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411E94M O23164 CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 (AtCOR413-PM4) 22632 Cold-regulated 413 plasma membrane protein 4 (AtCOR413-PM4) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; response to fructose [GO:0009750]; response to glucose [GO:0009749]; response to sucrose [GO:0009744] locus:2115010; AT4G37220 Cold acclimation protein WCOR413 NA NA NA NA NA NA NA ENOG411E94G SCL21 Q9S7H5 SCL21_ARATH Scarecrow-like protein 21 (AtSCL21) (GRAS family protein 11) (AtGRAS-11) FUNCTION: Probable transcription factor involved in plant development. {ECO:0000250}. 46468 Scarecrow-like protein 21 (AtSCL21) (GRAS family protein 11) (AtGRAS-11) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}. locus:2044973; AT2G04890 GRAS domain family NA NA NA NA NA NA NA ENOG411E94D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pectinacetylesterase NA NA NA NA NA NA NA ENOG411E94E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E94Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EJ3W F4JIM4 F4JIM4_ARATH Copper ion-binding protein 27003 Copper ion-binding protein mitochondrial ribosome [GO:0005761] locus:2127418; AT4G21140 NA NA NA NA NA NA NA NA ENOG411E94S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0554600 protein,Os07g0555000 protein (Fragment) B9FXV2,A0A0P0X862 B9FXV2_ORYSJ,A0A0P0X862_ORYSJ Os07g0554600 Os07g0554600 OsJ_24696 OSNPB_070554600,Os07g0555000 OSNPB_070555000 ENOG411EI06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0593266 protein A0A0N7KNS8 A0A0N7KNS8_ORYSJ Os07g0593266 OSNPB_070593266 ENOG411EI04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBb0017I01.17 protein (Os04g0680200 protein) Q7XKD7 Q7XKD7_ORYSJ OSJNBb0017I01.17 Os04g0680200 OSNPB_040680200 ENOG411EI08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI09 Q9SGR1 Q9SGR1_ARATH At1g76230 (T23E18.16) 14761 At1g76230 (T23E18.16) locus:2199748; AT1G76230 NA NA NA NA NA NA NA NA ENOG411EI0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF298 NA NA NA NA NA NA NA ENOG411EI0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0375200 protein,Os01g0153050 protein A0A0P0XU25,A0A0N7KCC7 A0A0P0XU25_ORYSJ,A0A0N7KCC7_ORYSJ Os10g0375200 OSNPB_100375200,Os01g0153050 OSNPB_010153050 ENOG411EI0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger NA NA NA NA NA NA NA ENOG411EI0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD protein dimerisation region NA NA NA NA NA NA NA ENOG411EI0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF NA NA NA NA NA NA NA ENOG411EI0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain NA NA NA NA NA NA NA ENOG411EI0F Q9LJF6 Q9LJF6_ARATH Uncharacterized protein 17187 Uncharacterized protein locus:4010713783; AT3G26934 NA NA NA NA NA NA NA NA ENOG411EI0G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0130500 protein,Os02g0298100 protein,Os07g0262700 protein,Os07g0131001 protein B9FVC0,Q0E1W1,A0A0P0X2H0,A0A0P0X4Z3,A0A0P0X291 B9FVC0_ORYSJ,Q0E1W1_ORYSJ,A0A0P0X2H0_ORYSJ,A0A0P0X4Z3_ORYSJ,A0A0P0X291_ORYSJ Os07g0130500 OsJ_22970 OSNPB_070130500,Os02g0298100 Os02g0298100 OSNPB_020298100,Os07g0130500 OSNPB_070130500,Os07g0262700 OSNPB_070262700,Os07g0131001 OSNPB_070131001 ENOG411EI0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0618250 protein A0A0P0WF01 A0A0P0WF01_ORYSJ Os04g0618250 OSNPB_040618250 ENOG411EI0A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EI0I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0043L09.17 protein (Os04g0634900 protein) Q7XQT0 Q7XQT0_ORYSJ Os04g0634900 Os04g0634900 OsJ_16306 OSJNBa0043L09.17 OSNPB_040634900 ENOG411E6UY A0A1P8AMK9,F4I1F3 A0A1P8AMK9_ARATH,F4I1F3_ARATH Transcription factor bHLH35-like protein 14833,17615 Transcription factor bHLH35-like protein locus:2029929; AT1G29270 NA NA NA NA NA NA NA NA ENOG411E6UT Q9LS61,Q9LS60,Q9C746,Q5BPX7 Q9LS61_ARATH,Q9LS60_ARATH,Q9C746_ARATH,Q5BPX7_ARATH At3g18295 (DUF1639 family protein, putative (DUF1639)),Uncharacterized protein,Uncharacterized protein F11I4_5 24248,29937,27370,19814 At3g18295 (DUF1639 family protein, putative (DUF1639)),Uncharacterized protein,Uncharacterized protein F11I4_5 chloroplast [GO:0009507] locus:2089683;,locus:2094992;,locus:2008194; AT3G18295,AT3G18300,AT1G48780 NA NA NA NA NA NA NA NA ENOG411E6UR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411E891 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6UB VAS Q9FFY3 VAS_ARATH Lipid transfer-like protein VAS FUNCTION: Promotes the number of phloem (pro)cambial and pericycle cells. {ECO:0000269|PubMed:12472696}. 16532 Lipid transfer-like protein VAS anchored component of membrane [GO:0031225]; lipid binding [GO:0008289]; transport [GO:0006810] TISSUE SPECIFICITY: Expressed in vascular tissues of all organs. {ECO:0000269|PubMed:12472696}. locus:2159053; AT5G13900 lipid transfer-like protein NA NA NA NA NA NA NA ENOG411E945 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zc3h12a-like Ribonuclease NYN domain NA NA NA NA NA NA NA ENOG411EJ39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FH2 NA NA NA NA NA NA NA ENOG411E8M8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EFh NA NA NA NA NA NA NA ENOG411E8M9 F5O8.9 Q9ZUE1 Q9ZUE1_ARATH At1g23530 (F28C11.16) (F5O8.9 protein) (Transmembrane protein) (Uncharacterized protein At1g23530) 20864 At1g23530 (F28C11.16) (F5O8.9 protein) (Transmembrane protein) (Uncharacterized protein At1g23530) integral component of membrane [GO:0016021] locus:2034790; AT1G23530 NA NA NA NA NA NA NA NA ENOG411E8M7 OST4B,OST4A,OST4C Q8L986,Q9LHK3,Q9SF57 OST4B_ARATH,OST4A_ARATH,OST4C_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B,Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A,Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C FUNCTION: May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. {ECO:0000250}. 4133,4197 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B,Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A,Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:504954805;,locus:4515103057; AT5G02502,AT3G12587,AT3G09455 May be involved in N-glycosylation through its association with N-oligosaccharyl transferase (By similarity) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B,Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A,Os07g0620500 protein,Os03g0392050 protein C7J0R5,C7J4U3,A0A0N7KNV7,A0A0N7KHD7 OST4B_ORYSJ,OST4A_ORYSJ,A0A0N7KNV7_ORYSJ,A0A0N7KHD7_ORYSJ OST4B Os03g0392050,OST4A Os07g0620501,Os07g0620500 OSNPB_070620500,Os03g0392050 OSNPB_030392050 FUNCTION: May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. {ECO:0000250}. ENOG411E8M0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: nuclear pore complex protein NA NA NA NA NA NA NA ENOG411E8M1 Q8LCR1 Q8LCR1_ARATH At5g67490 (Succinate dehydrogenase assembly factor) 11870 At5g67490 (Succinate dehydrogenase assembly factor) locus:2158596; AT5G67490 Protein of unknown function (DUF1674) Os06g0157800 protein (cDNA clone:J033022L20, full insert sequence) Q5VM93 Q5VM93_ORYSJ KMK0024M20.25 Os06g0157800 OsJ_20192 OSNPB_060157800 P0046E09.31 P0702F05.11 ENOG411E8MN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8MI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: inflorescence deficient in abscission NA NA NA NA NA NA NA ENOG411E8MK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0113900 protein (cDNA clone:001-102-B01, full insert sequence) Q6YXU0 Q6YXU0_ORYSJ Os08g0113900 Os08g0113900 OsJ_25810 OSNPB_080113900 P0427G12.8 ENOG411E8MD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8ME psbL P60129 PSBL_ARATH Photosystem II reaction center protein L (PSII-L) FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. {ECO:0000255|HAMAP-Rule:MF_01317}. 4470 Photosystem II reaction center protein L (PSII-L) chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II reaction center [GO:0009539]; thylakoid [GO:0009579]; photosynthesis [GO:0015979] locus:504954679; ATCG00560 photosystem II reaction center protein L Photosystem II reaction center protein L (PSII-L) P60137,Q6Z1V4 PSBL_ORYSJ,Q6Z1V4_ORYSJ psbL LOC_Osp1g00500,psbL Os03g0667201 B1065E10.8 OSJNBa0022A24.44 OSNPB_030667201 P0018C10.67 P0417D05.62 P0557A01.50 P0642B07.30 FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. {ECO:0000255|HAMAP-Rule:MF_01317}.,FUNCTION: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. {ECO:0000256|HAMAP-Rule:MF_01317}. ENOG411E8MF F10G19.2 O23120 O23120_ARATH At1g23040 (Hydroxyproline-rich glycoprotein family protein) (Predicted GPI-anchored protein) (T26J12.18 protein) (Uncharacterized protein F10G19.2) 15008 At1g23040 (Hydroxyproline-rich glycoprotein family protein) (Predicted GPI-anchored protein) (T26J12.18 protein) (Uncharacterized protein F10G19.2) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021] locus:2201185; AT1G23040 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411E8MB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 18 NA NA NA NA NA NA NA ENOG411E8MY Q8LD28 Q8LD28_ARATH At3g48490 13301 At3g48490 locus:2101140; AT3G48490 NA NA NA NA NA NA NA NA ENOG411E8MZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8MT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family NA NA NA NA NA NA NA ENOG411E8MU DVL10 Q6IM91 Q6IM91_ARATH DVL10 (ROTUNDIFOLIA like 12) 6560 DVL10 (ROTUNDIFOLIA like 12) shoot system development [GO:0048367] locus:4010713883; AT4G13395 DVL family NA NA NA NA NA NA NA ENOG411E8MW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8MR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8MS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Whole genome shotgun sequence of line PN40024 scaffold_38.assembly12x (Fragment) NA NA NA NA NA NA NA ENOG411EJEX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cotton fibre expressed protein Os08g0402001 protein A3BSX3 A3BSX3_ORYSJ Os08g0402001 OsJ_27226 OSNPB_080402001 ENOG411E3QG TRFL8 F4IPY7 F4IPY7_ARATH TRF-like 8 46548 TRF-like 8 nuclear telomere cap complex [GO:0000783]; double-stranded telomeric DNA binding [GO:0003691]; telomeric loop formation [GO:0031627] locus:504955960; AT2G37025 SANT NA NA NA NA NA NA NA ENOG411E3QF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411E3QD MORF7,RIP7 Q9CAH0,F4IDD2 MORF7_ARATH,F4IDD2_ARATH Multiple organellar RNA editing factor 7, mitochondrial (RNA editing-interacting protein 7),Plastid developmental protein DAG FUNCTION: Involved in organellar RNA editing. Required for the processing of few RNA editing sites in mitochondria. {ECO:0000269|PubMed:23818871}. 21623,22087 Multiple organellar RNA editing factor 7, mitochondrial (RNA editing-interacting protein 7),Plastid developmental protein DAG mitochondrion [GO:0005739]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397] locus:2030200; AT1G72530 plastid developmental protein DAG NA NA NA NA NA NA NA ENOG411E3QK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os01g0866000 protein (RING-H2 zinc finger protein-like) (cDNA clone:002-152-H11, full insert sequence) Q5N9E0 Q5N9E0_ORYSJ Os01g0866000 OSNPB_010866000 P0505D12.29 ENOG411E3QJ RBX1B,RBX1A,RBX1 Q9M2B0,Q940X7,F4K5K0,F4K5K1 RBX1B_ARATH,RBX1A_ARATH,F4K5K0_ARATH,F4K5K1_ARATH RING-box protein 1b (At-Rbx1;2) (RBX1-1) (RBX1b-At),RING-box protein 1a (At-Rbx1;1) (Protein RING of cullins 1) (RBX1-2) (RBX1a-At),RING-box 1 FUNCTION: Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate (By similarity). {ECO:0000250}.,FUNCTION: Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate. Promotes the neddylation of CUL1. {ECO:0000269|PubMed:12215511, ECO:0000269|PubMed:12381738, ECO:0000269|PubMed:12682009}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-110314;R-ATH-4641258;R-ATH-5632684;R-ATH-5696394;R-ATH-5696395;R-ATH-5696400;R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-8951664;R-ATH-983168; 12999,13238,16113,15267 RING-box protein 1b (At-Rbx1;2) (RBX1-1) (RBX1b-At),RING-box protein 1a (At-Rbx1;1) (Protein RING of cullins 1) (RBX1-2) (RBX1a-At),RING-box 1 Cul2-RING ubiquitin ligase complex [GO:0031462]; Cul3-RING ubiquitin ligase complex [GO:0031463]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; Cul7-RING ubiquitin ligase complex [GO:0031467]; cytoplasm [GO:0005737]; nuclear SCF ubiquitin ligase complex [GO:0043224]; cullin family protein binding [GO:0097602]; NEDD8 transferase activity [GO:0019788]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; protein neddylation [GO:0045116]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],Cul2-RING ubiquitin ligase complex [GO:0031462]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; Cul7-RING ubiquitin ligase complex [GO:0031467]; cytoplasm [GO:0005737]; nuclear SCF ubiquitin ligase complex [GO:0043224]; cullin family protein binding [GO:0097602]; NEDD8 transferase activity [GO:0019788]; ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; protein neddylation [GO:0045116]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146],Cul3-RING ubiquitin ligase complex [GO:0031463]; zinc ion binding [GO:0008270]; protein ubiquitination [GO:0016567]; response to auxin [GO:0009733],zinc ion binding [GO:0008270] TISSUE SPECIFICITY: Not detected in floral buds, stems and roots. {ECO:0000269|PubMed:12381738}.,TISSUE SPECIFICITY: Widely expressed. Expressed in shoot, siliques, meristem, flowers, floral buds, open flowers, leaves, stems, roots, germinal seeds and seedlings in dark. Expressed at a higher level in tissues containing actively dividing cells. {ECO:0000269|PubMed:12215511, ECO:0000269|PubMed:12381738}. locus:2099341;,locus:2149927; AT3G42830,AT5G20570 Ring-box protein Os02g0708300 protein,Os01g0106800 protein (cDNA clone:001-025-F02, full insert sequence) (cDNA clone:002-175-A04, full insert sequence) Q0DY92,Q0JRD5 Q0DY92_ORYSJ,Q0JRD5_ORYSJ Os02g0708300 Os02g0708300 OSNPB_020708300,Os01g0106800 Os01g0106800 OSNPB_010106800 ENOG411E3QI Q94F49 H2A5_ARATH Probable histone H2A.5 (HTA7) FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. 15908 Probable histone H2A.5 (HTA7) heterochromatin [GO:0000792]; nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; chromatin silencing [GO:0006342] locus:2143651; AT5G27670 histone h2a NA NA NA NA NA NA NA ENOG411E3QH MIJ24.9 Q940G3 Q940G3_ARATH 39S ribosomal protein (Uncharacterized protein MIJ24.9) 14438 39S ribosomal protein (Uncharacterized protein MIJ24.9) ribosome [GO:0005840] locus:2164885; AT5G39600 NA Os02g0282100 protein (cDNA clone:001-016-C09, full insert sequence) Q6K3C6 Q6K3C6_ORYSJ Os02g0282100 OsJ_06264 OSJNBa0063E14.21 OSNPB_020282100 ENOG411E3QN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pollen proteins Ole e I like Os07g0674400 protein (cDNA clone:002-156-G07, full insert sequence) Q6ZDW8 Q6ZDW8_ORYSJ P0618H09.12 Os07g0674400 OsJ_25554 OSNPB_070674400 P0037D09.14 ENOG411E3QM BHLH80,BHLH81,FBH1 Q9C8P8,Q9M0R0,A0A1P8AV82 BH080_ARATH,BH081_ARATH,A0A1P8AV82_ARATH Transcription factor bHLH80 (Basic helix-loop-helix protein 80) (AtbHLH80) (bHLH 80) (Transcription factor EN 71) (bHLH transcription factor bHLH080),Transcription factor bHLH81 (Basic helix-loop-helix protein 81) (AtbHLH81) (bHLH 81) (Transcription factor EN 72) (bHLH transcription factor bHLH081),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 28527,28691,25106 Transcription factor bHLH80 (Basic helix-loop-helix protein 80) (AtbHLH80) (bHLH 80) (Transcription factor EN 71) (bHLH transcription factor bHLH080),Transcription factor bHLH81 (Basic helix-loop-helix protein 81) (AtbHLH81) (bHLH 81) (Transcription factor EN 72) (bHLH transcription factor bHLH081),Basic helix-loop-helix (BHLH) DNA-binding superfamily protein nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; cuticle development [GO:0042335]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],nucleus [GO:0005634]; core promoter sequence-specific DNA binding [GO:0001046]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; regulation of transcription, DNA-templated [GO:0006355]; transcription from RNA polymerase II promoter [GO:0006366],DNA binding [GO:0003677]; protein dimerization activity [GO:0046983] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.,TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. locus:2008693;,locus:2141573; AT1G35460,AT4G09180 basic helix-loop-helix (bHLH) family protein NA NA NA NA NA NA NA ENOG411E3QS TIFY3B,TIFY3A,JAZ11 Q9C5K8,Q9M246,F4IZ48 TIF3B_ARATH,TIF3A_ARATH,F4IZ48_ARATH Protein TIFY 3B (Jasmonate ZIM domain-containing protein 12),Protein TIFY 3A (Jasmonate ZIM domain-containing protein 11),Jasmonate-zim-domain protein 11 FUNCTION: Repressor of jasmonate responses. {ECO:0000269|PubMed:19151223}.,FUNCTION: Repressor of jasmonate (JA) responses. Targets MYC2, MYC3 and MYC4 that are JA-dependent transcription activators. {ECO:0000269|PubMed:19151223, ECO:0000269|PubMed:21335373}. 19933,25841,16343 Protein TIFY 3B (Jasmonate ZIM domain-containing protein 12),Protein TIFY 3A (Jasmonate ZIM domain-containing protein 11),Jasmonate-zim-domain protein 11 nucleus [GO:0005634]; transcription corepressor activity [GO:0003714]; defense response [GO:0006952]; negative regulation of nucleic acid-templated transcription [GO:1903507]; regulation of defense response [GO:0031347]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of transcription, DNA-templated [GO:0006355]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] locus:2147142;,locus:2098179; AT5G20900,AT3G43440 tify domain Protein TIFY 3 (OsTIFY3) (Jasmonate ZIM domain-containing protein 1) (OsJAZ1) (OsJAZ10) (Protein EXTRA GLUME 2),Os04g0653000 protein (Fragment) Q7XPM8,A0A0N7KJU4 TIF3_ORYSJ,A0A0N7KJU4_ORYSJ TIFY3 EG2 JAZ1 Os04g0653000 LOC_Os04g55920 OsJ_16440 OSJNBa0060D06.16,Os04g0653000 OSNPB_040653000 FUNCTION: Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. Involved in jasmonate (JA) signaling pathway during spikelet development. Targets directly the transcription activator MYC2 and suppresses the activity of MYC2 in triggering the transcription of MADS1 (PubMed:24647160). {ECO:0000269|PubMed:24647160}. ENOG411E3QR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0304100 protein) (cDNA clone:002-176-C02, full insert sequence) Q10ML7 Q10ML7_ORYSJ Os03g0304100 LOC_Os03g19170 Os03g0304100 OsJ_10541 OSNPB_030304100 ENOG411E3QQ Q8L8C0,Q8LBM4,F4ILA9,A8MR92 ISAM3_ARATH,ISAM1_ARATH,F4ILA9_ARATH,A8MR92_ARATH Iron-sulfur assembly protein IscA-like 3, mitochondrial,Iron-sulfur assembly protein IscA-like 1, mitochondrial,Iron-sulfur cluster biosynthesis family protein FUNCTION: Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly (By similarity). {ECO:0000250}. R-ATH-1362409; 12162,14985,15530,12264 Iron-sulfur assembly protein IscA-like 3, mitochondrial,Iron-sulfur assembly protein IscA-like 1, mitochondrial,Iron-sulfur cluster biosynthesis family protein mitochondrial matrix [GO:0005759]; 2 iron, 2 sulfur cluster binding [GO:0051537]; ferrous iron binding [GO:0008198]; structural molecule activity [GO:0005198]; iron-sulfur cluster assembly [GO:0016226]; protein maturation by iron-sulfur cluster transfer [GO:0097428],iron-sulfur cluster binding [GO:0051536]; structural molecule activity [GO:0005198]; protein maturation by iron-sulfur cluster transfer [GO:0097428] locus:2049440;,locus:2059872; AT2G36260,AT2G16710 Iron-sulfur assembly protein IscA-like 1 IscA-like (Os01g0105800 protein) (cDNA clone:J013071F21, full insert sequence),HesB/YadR/YfhF family protein, putative, expressed (Os12g0485500 protein) (cDNA clone:J013029F07, full insert sequence) (cDNA clone:J023076O17, full insert sequence) Q657Z2,Q2QQS4 Q657Z2_ORYSJ,Q2QQS4_ORYSJ Os01g0105800 Os01g0105800 OsJ_00044 OSNPB_010105800 P0005A05.11,Os12g0485500 LOC_Os12g30030 Os12g0485500 OsJ_36107 OSNPB_120485500 ENOG411E3QP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA - C2H2 zinc finger protein Os03g0148900 protein,Os05g0229900 protein A0A0P0VT28,A0A0P0WJH4 A0A0P0VT28_ORYSJ,A0A0P0WJH4_ORYSJ Os03g0148900 OSNPB_030148900,Os05g0229900 OSNPB_050229900 ENOG411E3QW MSJ1.2 Q9FMG6 Q9FMG6_ARATH Dbj|BAA96220.1 (Tropomyosin) (Uncharacterized protein At5g64180) 17804 Dbj|BAA96220.1 (Tropomyosin) (Uncharacterized protein At5g64180) locus:2173323; AT5G64180 NA Os12g0502100 protein B9GDA4 B9GDA4_ORYSJ Os12g0502100 OsJ_36194 OSNPB_120502100 ENOG411E3QV LQY1 Q8GSJ6 LQY1_ARATH Protein disulfide-isomerase LQY1, chloroplastic (EC 5.3.4.1) (Protein LOW QUANTUM YIELD OF PHOTOSYSTEM II 1) DISRUPTION PHENOTYPE: Lower maximum photochemical efficiency of photosystem II after high-light treatment. {ECO:0000269|PubMed:21586683}. FUNCTION: Protein disulfide-isomerase probably involved upon formation of a complex with HHL1 in maintaining photosystem II (PSII) activity under high light by regulating repair and reassembly of PSII complexes. {ECO:0000269|PubMed:21586683, ECO:0000269|PubMed:24632535}. MISCELLANEOUS: Its sequence is related to the DnaJ family but lacks the J domain. The CR-type-like region is similar to CR-type zinc-fingers and was shown to bind zinc (PubMed:21586683). {ECO:0000305|PubMed:21586683}. 5.3.4.1 16334 Protein disulfide-isomerase LQY1, chloroplastic (EC 5.3.4.1) (Protein LOW QUANTUM YIELD OF PHOTOSYSTEM II 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; protein disulfide isomerase activity [GO:0003756]; unfolded protein binding [GO:0051082]; photosystem II repair [GO:0010206] locus:2005585; AT1G75690 NA Expressed protein (Os03g0244000 protein) (cDNA clone:006-202-G02, full insert sequence) (cDNA clone:006-205-B02, full insert sequence) Q10P76 Q10P76_ORYSJ Os03g0244000 LOC_Os03g14040 Os03g0244000 OsJ_10110 OSNPB_030244000 ENOG411E3QU HSP15.7 Q9FHQ3 HS157_ARATH 15.7 kDa heat shock protein, peroxisomal (AtHsp15.7) FUNCTION: Possesses chaperone activity. {ECO:0000269|PubMed:16531488}. 15698 15.7 kDa heat shock protein, peroxisomal (AtHsp15.7) peroxisomal matrix [GO:0005782]; protein folding [GO:0006457]; response to heat [GO:0009408]; response to reactive oxygen species [GO:0000302] locus:2151719; AT5G37670 Heat Shock Protein 16.0 kDa heat shock protein, peroxisomal (OsHsp16.0) Q652V8 HSP16_ORYSJ HSP16.0 Os06g0253100 LOC_Os06g14240 OsJ_20841 P0046H10.20 ENOG411E3QT PLAT1,PLAT2 O65660,Q9SIE7 PLAT1_ARATH,PLAT2_ARATH PLAT domain-containing protein 1 (AtPLAT1) (PLAT domain protein 1),PLAT domain-containing protein 2 (AtPLAT2) (PLAT domain protein 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plant have enhanced sensitivity to salt, drought and cold stresses. {ECO:0000269|PubMed:25396746}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:25396746}. FUNCTION: Positive regulator of abiotic stress tolerance involved in the regulation of plant growth. May be a downstream target of the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:25396746}.,FUNCTION: Involved in response to abiotic stress. {ECO:0000250|UniProtKB:O65660}. 20136,20130 PLAT domain-containing protein 1 (AtPLAT1) (PLAT domain protein 1),PLAT domain-containing protein 2 (AtPLAT2) (PLAT domain protein 2) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; regulation of growth [GO:0040008]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; thylakoid [GO:0009579] TISSUE SPECIFICITY: Expressed in root tips, pericycle cells, lateral root primordia, stomata, leaf vasculature, hydathodes and floral organs. {ECO:0000269|PubMed:25396746}. locus:2135217;,locus:2060410; AT4G39730,AT2G22170 wound stress protein OSJNBa0006M15.20 protein (OSJNBa0036B21.4 protein) (Os04g0456700 protein) (cDNA clone:J013002D12, full insert sequence),Os06g0221300 protein (Putative dehydration stress-induced protein) Q7XRE7,Q67VZ0 Q7XRE7_ORYSJ,Q67VZ0_ORYSJ Os04g0456700 OSJNBa0036B21.4 Os04g0456700 OsJ_15027 OSJNBa0006M15.20 OSNPB_040456700,Os06g0221300 Os06g0221300 OsJ_20632 OSNPB_060221300 P0516A04.16 ENOG411E3QZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:RnaseH Expressed protein (Os03g0158600 protein),Os02g0630250 protein,Os06g0683500 protein Q10RI1,A0A0P0VM24,A0A0P0X025 Q10RI1_ORYSJ,A0A0P0VM24_ORYSJ,A0A0P0X025_ORYSJ Os03g0158600 LOC_Os03g06250 OSNPB_030158600,Os02g0630250 OSNPB_020630250,Os06g0683500 OSNPB_060683500 ENOG411E3QY SC35 Q9FMG4 SC35_ARATH Serine/arginine-rich splicing factor SC35 (At-SC35) (AtSC35) (SC35-like splicing factor) DISRUPTION PHENOTYPE: No effect on SCL33 alternative splicing. {ECO:0000269|PubMed:22913769}. FUNCTION: Probably involved in intron recognition and spliceosome assembly, but not involved in alternative splicing regulation of the SCL33 intron. {ECO:0000269|PubMed:22913769}. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}. R-ATH-72163;R-ATH-72165; 35170 Serine/arginine-rich splicing factor SC35 (At-SC35) (AtSC35) (SC35-like splicing factor) cytosol [GO:0005829]; membrane [GO:0016020]; nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380] locus:2173338; AT5G64200 splicing factor Os08g0486200 protein (Putative splicing factor, arginine/serine-rich) (cDNA clone:001-125-B07, full insert sequence) (cDNA clone:J033136B19, full insert sequence) Q6ZDR7 Q6ZDR7_ORYSJ Os08g0486200 Os08g0486200 OSNPB_080486200 P0481F05.17 ENOG411E3QX ZAT10,ZAT6,AZF3 Q96289,O22533,Q9SSW0 ZAT10_ARATH,ZAT6_ARATH,AZF3_ARATH Zinc finger protein ZAT10 (Salt-tolerance zinc finger),Zinc finger protein ZAT6 (COLD INDUCED ZINC FINGER PROTEIN 2),Zinc finger protein AZF3 (Zinc-finger protein 3) FUNCTION: Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}.,FUNCTION: Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}.,FUNCTION: Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}. MISCELLANEOUS: Plants overexpressing ZAT10 show growth retardation and enhanced tolerance to drought, salt, heat and osmotic stresses. Plants silencing ZAT10 show enhanced tolerance to salt and osmotic stresses.,MISCELLANEOUS: Seeds silencing ZAT6 fail to germinate. Plants overexpressing ZAT6 have retarded growth with smaller primary roots and fewer leaves. 24614,25252,21020 Zinc finger protein ZAT10 (Salt-tolerance zinc finger),Zinc finger protein ZAT6 (COLD INDUCED ZINC FINGER PROTEIN 2),Zinc finger protein AZF3 (Zinc-finger protein 3) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism growth [GO:0035264]; negative regulation of transcription, DNA-templated [GO:0045892]; photoprotection [GO:0010117]; photosynthesis [GO:0015979]; response to abscisic acid [GO:0009737]; response to chitin [GO:0010200]; response to cold [GO:0009409]; response to high light intensity [GO:0009644]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; core promoter binding [GO:0001047]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; phosphate ion homeostasis [GO:0055062]; regulation of root development [GO:2000280]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; hyperosmotic salinity response [GO:0042538]; negative regulation of transcription, DNA-templated [GO:0045892]; response to chitin [GO:0010200]; response to cold [GO:0009409]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. locus:2199246;,locus:2179964;,locus:2167766; AT1G27730,AT5G04340,AT5G43170 Zinc finger protein Os12g0583700 protein (Zinc finger, C2H2 type family protein, expressed) Q2QN06 Q2QN06_ORYSJ LOC_Os12g39400 Os12g0583700 OSNPB_120583700 ENOG411E3Q3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-Box protein F-box protein interaction domain containing protein, expressed (Os12g0164300 protein) Q2QXA0 Q2QXA0_ORYSJ Os12g0164300 LOC_Os12g06740 Os12g0164300 OSNPB_120164300 ENOG411E3Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy metal-associated domain containing protein Copper-binding protein-like (Os06g0542300 protein) (cDNA, clone: J100052L04, full insert sequence) Q5Z6Y0 Q5Z6Y0_ORYSJ Os06g0542300 B1068H08.11 OsJ_21612 OSNPB_060542300 ENOG411E3Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35EXOc NA NA NA NA NA NA NA ENOG411E3Q6 DAD1,DAD2,ATDAD1 Q39080,O22622,A0A1P8AMW1,F4IKR2 DAD1_ARATH,DAD2_ARATH,A0A1P8AMW1_ARATH,F4IKR2_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (Oligosaccharyl transferase subunit DAD1) (EC 2.4.99.18) (Defender against cell death 1) (AtDAD1) (DAD-1),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD2 (Oligosaccharyl transferase subunit DAD2) (EC 2.4.99.18) (Defender against cell death 2) (AtDAD2) (DAD-2),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (Oligosaccharyl transferase subunit DAD1) (EC 2.4.99.18) FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. Possesses cell death-inhibiting activity. {ECO:0000250}.,FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. {ECO:0000256|RuleBase:RU361136}. PATHWAY: Protein modification; protein glycosylation.,PATHWAY: Protein modification; protein glycosylation. {ECO:0000256|RuleBase:RU361136}. ARA:AT1G32210-MONOMER; Metabolic pathways (01100),Various types of N-glycan biosynthesis (00513),Protein processing in endoplasmic reticulum (04141),N-Glycan biosynthesis (00510) 2.4.99.18 12695,12647,12012,12775 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (Oligosaccharyl transferase subunit DAD1) (EC 2.4.99.18) (Defender against cell death 1) (AtDAD1) (DAD-1),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD2 (Oligosaccharyl transferase subunit DAD2) (EC 2.4.99.18) (Defender against cell death 2) (AtDAD2) (DAD-2),Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (Oligosaccharyl transferase subunit DAD1) (EC 2.4.99.18) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; oligosaccharyltransferase complex [GO:0008250]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; protein N-linked glycosylation [GO:0006487],integral component of membrane [GO:0016021]; oligosaccharyltransferase complex [GO:0008250]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; protein N-linked glycosylation [GO:0006487],integral component of membrane [GO:0016021]; oligosaccharyltransferase complex [GO:0008250]; dolichyl-diphosphooligosaccharide-protein glycotransferase activity [GO:0004579]; protein glycosylation [GO:0006486] TISSUE SPECIFICITY: Ubiquitous. locus:2031765;,locus:2062461; AT1G32210,AT2G35520 Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser Thr consensus motif in nascent polypeptide chains (By similarity). Possesses cell death- inhibiting activity (By similarity) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (Oligosaccharyl transferase subunit DAD1) (EC 2.4.99.18) (Defender against apoptotic death 1 protein) (Defender against cell death 1) (DAD-1) Q0JDK9 DAD1_ORYSJ DAD1 DAD-1 Os04g0397000 LOC_Os04g32550 OsJ_014065 OSJNBa0039C07.3 FUNCTION: Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. Possesses cell death-inhibiting activity. {ECO:0000250}. ENOG411E3Q4 LEA14 O03983 LEA14_ARATH Probable desiccation-related protein LEA14 16543 Probable desiccation-related protein LEA14 cytosol [GO:0005829]; defense response to fungus [GO:0050832]; response to desiccation [GO:0009269]; response to high light intensity [GO:0009644]; response to wounding [GO:0009611] locus:2025346; AT1G01470 late embryogenesis abundant protein Os01g0225600 protein (Putative late embryogenesis-abundant protein) Q9AWZ5 Q9AWZ5_ORYSJ Os01g0225600 OsJ_00952 OSNPB_010225600 P0443E07.9 P0492F05.18 ENOG411E3Q8 ATG8G,ATG8F,ATG8D Q9LZZ9,Q8VYK7,Q9SL04,A0A1P8B738,F4IHC1 ATG8G_ARATH,ATG8F_ARATH,ATG8D_ARATH,A0A1P8B738_ARATH,F4IHC1_ARATH Autophagy-related protein 8g (Autophagy-related ubiquitin-like modifier ATG8g) (AtAPG8g) (Protein autophagy 8g),Autophagy-related protein 8f (Autophagy-related ubiquitin-like modifier ATG8f) (AtAPG8f) (Protein autophagy 8f),Autophagy-related protein 8d (Autophagy-related ubiquitin-like modifier ATG8d) (AtAPG8d) (Protein autophagy 8d),Autophagy-related protein FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}. 13937,13762,13907,13666,18857 Autophagy-related protein 8g (Autophagy-related ubiquitin-like modifier ATG8g) (AtAPG8g) (Protein autophagy 8g),Autophagy-related protein 8f (Autophagy-related ubiquitin-like modifier ATG8f) (AtAPG8f) (Protein autophagy 8f),Autophagy-related protein 8d (Autophagy-related ubiquitin-like modifier ATG8d) (AtAPG8d) (Protein autophagy 8d),Autophagy-related protein autophagosome membrane [GO:0000421]; cytoplasmic vesicle [GO:0031410]; microtubule [GO:0005874]; autophagy [GO:0006914]; cellular response to nitrogen starvation [GO:0006995]; protein transport [GO:0015031],autophagy [GO:0006914] TISSUE SPECIFICITY: Contitutively expressed. {ECO:0000269|PubMed:15494556}. locus:2101816;,locus:2130759;,locus:2058939; AT3G60640,AT4G16520,AT2G05630 autophagy-related protein NA NA NA NA NA NA NA ENOG411E7ET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain Os06g0693800 protein,Expressed protein (Os03g0295866 protein),Os07g0542500 protein,Os05g0244900 protein,Os06g0691500 protein (Fragment) Q5Z8K5,Q10MT6,A3BKT4,A0A0N7KKE5,A0A0P0X0I5 Q5Z8K5_ORYSJ,Q10MT6_ORYSJ,A3BKT4_ORYSJ,A0A0N7KKE5_ORYSJ,A0A0P0X0I5_ORYSJ Os06g0693800 OsJ_22471 OSNPB_060693800 P0550B04.20,Os03g0295866 LOC_Os03g18470 OsJ_10482 OSNPB_030295866,Os07g0542500 OsJ_24618 OSNPB_070542500,Os05g0244900 OSNPB_050244900,Os06g0691500 OSNPB_060691500 ENOG411ECYI A0A1I9LSS3,F4JFJ0 A0A1I9LSS3_ARATH,F4JFJ0_ARATH Transferase 74448,73977 Transferase transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747],plastoglobule [GO:0010287]; diacylglycerol O-acyltransferase activity [GO:0004144]; phytol metabolic process [GO:0033306] locus:2078613; AT3G02030 Diacylglycerol acyltransferase NA NA NA NA NA NA NA ENOG411ECYZ PAM74,MTH12.9 C0LGW2,Q9FN93,A0A1P8BAD8,F4KJ89 PAM74_ARATH,Y5596_ARATH,A0A1P8BAD8_ARATH,F4KJ89_ARATH Probable LRR receptor-like serine/threonine-protein kinase PAM74 (EC 2.7.11.1) (Protein PHOTOSYNTHESIS AFFECTED MUTANT 74),Probable LRR receptor-like serine/threonine-protein kinase At5g59680 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein,Interleukin-1 receptor-associated kinase 4 protein DISRUPTION PHENOTYPE: Partially lethal. Survivors turn pale green and show a stunted growth. Affected in photosynthesis; difference in the quantum efficiency of PS11. {ECO:0000269|Ref.4}. FUNCTION: Required for accurate photosynthesis. {ECO:0000269|Ref.4}. 2.7.11.1 98530,98369,99349,17837 Probable LRR receptor-like serine/threonine-protein kinase PAM74 (EC 2.7.11.1) (Protein PHOTOSYNTHESIS AFFECTED MUTANT 74),Probable LRR receptor-like serine/threonine-protein kinase At5g59680 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein,Interleukin-1 receptor-associated kinase 4 protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],kinase activity [GO:0016301] locus:2174304;,locus:504954865; AT5G59650,AT5G59680,AT5G59616 STYKc NA NA NA NA NA NA NA ENOG411ECYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECYS POT9,KUP9 O49423,A0A1P8B977,A0A1P8B951,F4JU14 POT9_ARATH,A0A1P8B977_ARATH,A0A1P8B951_ARATH,F4JU14_ARATH Potassium transporter 9 (AtPOT9),Potassium transporter FUNCTION: Putative potassium transporter.,FUNCTION: Potassium transporter. {ECO:0000256|RuleBase:RU321113}. 90351,65904,93353,92374 Potassium transporter 9 (AtPOT9),Potassium transporter integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; potassium ion transmembrane transporter activity [GO:0015079],integral component of membrane [GO:0016021]; potassium ion transmembrane transporter activity [GO:0015079] locus:2119812; AT4G19960 potassium ion transmembrane transporter NA NA NA NA NA NA NA ENOG411ECYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dynamin family NA NA NA NA NA NA NA ENOG411ECYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:IML2 NA NA NA NA NA NA NA ENOG411EANP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os01g0244000 protein Q5NAA6 Q5NAA6_ORYSJ B1008C01.14 Os01g0244000 OSNPB_010244000 ENOG411EANQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SERPIN Os07g0159300 protein,Os11g0224532 protein A0A0P0X2G5,A0A0P0Y0C9 A0A0P0X2G5_ORYSJ,A0A0P0Y0C9_ORYSJ Os07g0159300 OSNPB_070159300,Os11g0224532 OSNPB_110224532 ENOG411EANR Q94C33,Q9FH61 C3H45_ARATH,C3H68_ARATH Zinc finger CCCH domain-containing protein 45 (AtC3H45),Zinc finger CCCH domain-containing protein 68 (AtC3H68) 57370,49442 Zinc finger CCCH domain-containing protein 45 (AtC3H45),Zinc finger CCCH domain-containing protein 68 (AtC3H68) DNA binding [GO:0003677]; metal ion binding [GO:0046872] locus:2080958;,locus:2155026; AT3G51180,AT5G66270 zinc finger NA NA NA NA NA NA NA ENOG411EANS O23564 Y4721_ARATH Putative WEB family protein At4g17210 60517 Putative WEB family protein At4g17210 cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2130729; AT4G17210 Pfam:DUF827 NA NA NA NA NA NA NA ENOG411EANT BGLU27 Q9M1D1 BGL27_ARATH Beta-glucosidase 27 (AtBGLU27) (EC 3.2.1.21) ARA:AT3G60120-MONOMER; R-ATH-189085; 3.2.1.21 62450 Beta-glucosidase 27 (AtBGLU27) (EC 3.2.1.21) beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657] locus:2101407; AT3G60120 Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411EANU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0438400 protein) (cDNA, clone: J065188E03, full insert sequence),Os10g0378800 protein,Os01g0554150 protein,Os11g0126500 protein Q53JN5,B9G5G8,A0A0P0V3Z6,A0A0P0XYF4 Q53JN5_ORYSJ,B9G5G8_ORYSJ,A0A0P0V3Z6_ORYSJ,A0A0P0XYF4_ORYSJ Os11g0438400 LOC_Os11g25130 OsJ_31165 OSNPB_110438400,Os10g0378800 OsJ_31317 OSNPB_100378800,Os01g0554150 OSNPB_010554150,Os11g0126500 OSNPB_110126500 ENOG411EANV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of Vps4 activity in the MVB pathway NA NA NA NA NA NA NA ENOG411EANW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 Os07g0271700 protein A0A0P0X4G0 A0A0P0X4G0_ORYSJ Os07g0271700 OSNPB_070271700 ENOG411EANX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF674) Os01g0153950 protein,Os01g0154100 protein A2ZPE3,A0A0P0UY70 A2ZPE3_ORYSJ,A0A0P0UY70_ORYSJ Os01g0153950 OsJ_00422 OSNPB_010153950,Os01g0154100 OSNPB_010154100 ENOG411EANY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridoxal-phosphate dependent enzyme NA NA NA NA NA NA NA ENOG411EANZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EANA T26I12.60 Q9M3D1,O80627,A0A1P8AYN5 Q9M3D1_ARATH,O80627_ARATH,A0A1P8AYN5_ARATH Alpha/beta-Hydrolases superfamily protein (Lipase-like protein),Alpha/beta-Hydrolases superfamily protein (At2g39400/F12L6.6) (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein ARA:GQT-2127-MONOMER;,ARA:AT2G39400-MONOMER; 35590,35246,28376 Alpha/beta-Hydrolases superfamily protein (Lipase-like protein),Alpha/beta-Hydrolases superfamily protein (At2g39400/F12L6.6) (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein cytosol [GO:0005829]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629],hydrolase activity [GO:0016787] locus:2100701;,locus:2039812; AT3G55180,AT2G39400 Esterase lipase thioesterase family protein NA NA NA NA NA NA NA ENOG411EANB Q84WU7,A0A1I9LS54,A0A1I9LM45,F4J3B9,A0A1I9LS53,A0A1I9LS55,F4J3C0,A0A1I9LM46 Q84WU7_ARATH,A0A1I9LS54_ARATH,A0A1I9LM45_ARATH,F4J3B9_ARATH,A0A1I9LS53_ARATH,A0A1I9LS55_ARATH,F4J3C0_ARATH,A0A1I9LM46_ARATH Eukaryotic aspartyl protease family protein (Uncharacterized protein At3g51330),Eukaryotic aspartyl protease family protein 57864,56068,50090,58000,43790,42617,56850,50214 Eukaryotic aspartyl protease family protein (Uncharacterized protein At3g51330),Eukaryotic aspartyl protease family protein anchored component of membrane [GO:0031225]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508],aspartic-type endopeptidase activity [GO:0004190],aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2080903;,locus:2080908;,locus:2080913; AT3G51330,AT3G51340,AT3G51350 aspartyl protease family protein NA NA NA NA NA NA NA ENOG411EANC FXG1 Q9FXE5 FUCO3_ARATH Alpha-L-fucosidase 3 (EC 3.2.1.51) (Alpha-1,2-fucosidase) (AtFXG1) (Alpha-L-fucoside fucohydrolase 3) FUNCTION: Hydrolyzes alpha-1,2-linked fucose. Also active on fucosylated xyloglucan oligosaccharides. {ECO:0000269|PubMed:11788770}. ARA:AT1G67830-MONOMER;MetaCyc:AT1G67830-MONOMER; 3.2.1.51 40462 Alpha-L-fucosidase 3 (EC 3.2.1.51) (Alpha-1,2-fucosidase) (AtFXG1) (Alpha-L-fucoside fucohydrolase 3) apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; alpha-L-fucosidase activity [GO:0004560]; hydrolase activity, acting on ester bonds [GO:0016788]; metabolic process [GO:0008152] TISSUE SPECIFICITY: High expression in younger leaves and in the apical region of the inflorescence stem. {ECO:0000269|PubMed:16267099}. locus:2008535; AT1G67830 GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EAND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EANE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Autophagy-related protein 13 NA NA NA NA NA NA NA ENOG411EANF ARR18 Q9FGT7 ARR18_ARATH Two-component response regulator ARR18 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. 70407 Two-component response regulator ARR18 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Predominantly expressed in young leaf tissue developing anthers, and siliques. {ECO:0000269|PubMed:15173562}. AT5G58080 REC NA NA NA NA NA NA NA ENOG411EANH A0A1P8APL3,F4ICV8 A0A1P8APL3_ARATH,F4ICV8_ARATH Regulator of Vps4 activity in the MVB pathway protein R-ATH-6798695; 33873,40004 Regulator of Vps4 activity in the MVB pathway protein protein transport [GO:0015031] locus:1006230707; AT1G52315 Regulator of Vps4 activity in the MVB pathway NA NA NA NA NA NA NA ENOG411EANI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EXOIII NA NA NA NA NA NA NA ENOG411EANJ Q9SFZ2 Q9SFZ2_ARATH At1g27670 (T22C5.12) (Transmembrane protein) (Uncharacterized protein At1g27670/T22C5_12) 26032 At1g27670 (T22C5.12) (Transmembrane protein) (Uncharacterized protein At1g27670/T22C5_12) integral component of membrane [GO:0016021] locus:2199226; AT1G27670 NA NA NA NA NA NA NA NA ENOG411EANK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY NA NA NA NA NA NA NA ENOG411EANM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EANN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0824700 protein (cDNA clone:J023063M01, full insert sequence) Q0JI48 Q0JI48_ORYSJ Os01g0824700 Os01g0824700 OSNPB_010824700 ENOG411EAN0 T6H20.80 Q9STG1 Q9STG1_ARATH At3g46890 (Maternal effect embryo arrest protein) (Uncharacterized protein T6H20.80) 21836 At3g46890 (Maternal effect embryo arrest protein) (Uncharacterized protein T6H20.80) integral component of membrane [GO:0016021] locus:2102742; AT3G46890 NA NA NA NA NA NA NA NA ENOG411EAN1 NUDT6,NUDT7 Q9SJC4,Q9SU14,Q9SJC5,A0A1P8B846,A0A1P8B842,F4JRE7 NUDT6_ARATH,NUDT7_ARATH,Q9SJC5_ARATH,A0A1P8B846_ARATH,A0A1P8B842_ARATH,F4JRE7_ARATH Nudix hydrolase 6 (AtNUDT6) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase 7 (AtNUDT7) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (Protein GROWTH FACTOR GENE 1),MutT/nudix family protein (Putative mutT domain protein),MutT/nudix family protein DISRUPTION PHENOTYPE: Growth retardation, constitutive pathogen resistance phenotype and increased levels of reactive oxygen species and NADH. {ECO:0000269|PubMed:16328543, ECO:0000269|PubMed:16531493, ECO:0000269|PubMed:17660350}. growth retardation and strongly enhanced basal resistance to virulent H. parasitica; spontaneous death of individual cells in leaves of 2- 3- and 4-week-old plants; SA levels fourfold higher than wild plants Dwarf; Curled leaves-R. Mahalingam-2006 FUNCTION: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear. {ECO:0000269|PubMed:15878881}.,FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use both NADH and ADP-ribose as substrates, but not 8-oxo-dGTP, cyclic ADP-ribose, GDP-manose, UDP-glucose, ATP, or GTP. Exerts negative control of EDS1 signaling. {ECO:0000269|PubMed:15878881, ECO:0000269|PubMed:16154395, ECO:0000269|PubMed:16328543, ECO:0000269|PubMed:16531493, ECO:0000269|PubMed:17660350}. ARA:AT2G04450-MONOMER;MetaCyc:AT2G04450-MONOMER;,ARA:AT4G12720-MONOMER;,ARA:AT2G04440-MONOMER; 3.6.1.13; 3.6.1.-; 3.6.1.13; 3.6.1.22 31913,31884,24393,24326,22556,36510 Nudix hydrolase 6 (AtNUDT6) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22),Nudix hydrolase 7 (AtNUDT7) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (Protein GROWTH FACTOR GENE 1),MutT/nudix family protein (Putative mutT domain protein),MutT/nudix family protein ADP-ribose diphosphatase activity [GO:0047631]; metal ion binding [GO:0046872]; NAD binding [GO:0051287]; NAD+ diphosphatase activity [GO:0000210]; NADH pyrophosphatase activity [GO:0035529]; positive regulation of salicylic acid mediated signaling pathway [GO:0080151]; response to other organism [GO:0051707],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ADP-ribose diphosphatase activity [GO:0047631]; metal ion binding [GO:0046872]; NAD+ diphosphatase activity [GO:0000210],hydrolase activity [GO:0016787],cytosol [GO:0005829]; ADP-glucose pyrophosphohydrolase activity [GO:0080042]; ADP-ribose diphosphatase activity [GO:0047631]; ADP-ribose pyrophosphohydrolase activity [GO:0080041]; NAD binding [GO:0051287]; NAD+ diphosphatase activity [GO:0000210]; nucleoside-diphosphatase activity [GO:0017110]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response to bacterium [GO:0042742]; plant-type hypersensitive response [GO:0009626]; protein poly-ADP-ribosylation [GO:0070212]; regulation of starch biosynthetic process [GO:0010581]; response to oxidative stress [GO:0006979]; response to ozone [GO:0010193]; response to salt stress [GO:0009651] TISSUE SPECIFICITY: Expressed in stems and leaves. Weakly or not expressed in roots. {ECO:0000269|PubMed:15878881}.,TISSUE SPECIFICITY: Expressed in stems, leaves, roots, flowers and siliques. {ECO:0000269|PubMed:15878881, ECO:0000269|PubMed:16328543}. locus:2058334;,locus:2058349;,locus:2135803; AT2G04450,AT4G12720,AT2G04440 ADP-ribose diphosphatase NAD or NADH binding hydrolase nucleoside-diphosphatase protein homodimerization NA NA NA NA NA NA NA ENOG411EAN2 O81797 O81797_ARATH Expressed protein (Selection/upkeep of intraepithelial T-cells protein, putative (DUF241)) (Uncharacterized protein AT4g35660) (Uncharacterized protein F8D20.170) 32182 Expressed protein (Selection/upkeep of intraepithelial T-cells protein, putative (DUF241)) (Uncharacterized protein AT4g35660) (Uncharacterized protein F8D20.170) locus:2128008; AT4G35660 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411EAN3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 32 C terminal NA NA NA NA NA NA NA ENOG411EAN4 4CLL4,4CLL8,4CLL3,4CL8 P0C5B6,Q84P26,Q3E6Y4,A0A1P8BFI3,A0A1P8BFF5,A0A1P8AV51 4CLL4_ARATH,4CLL8_ARATH,4CLL3_ARATH,A0A1P8BFI3_ARATH,A0A1P8BFF5_ARATH,A0A1P8AV51_ARATH 4-coumarate--CoA ligase-like 4 (EC 6.2.1.-),4-coumarate--CoA ligase-like 8 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 11) (At4CL11),4-coumarate--CoA ligase-like 3 (EC 6.2.1.-),AMP-dependent synthetase and ligase family protein ARA:AT1G20500-MONOMER;,ARA:AT5G38120-MONOMER;,ARA:AT1G20490-MONOMER; 6.2.1.- 60521,60393,60499,52341,56451,48811 4-coumarate--CoA ligase-like 4 (EC 6.2.1.-),4-coumarate--CoA ligase-like 8 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 11) (At4CL11),4-coumarate--CoA ligase-like 3 (EC 6.2.1.-),AMP-dependent synthetase and ligase family protein peroxisome [GO:0005777]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; metabolic process [GO:0008152],integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; metabolic process [GO:0008152],ligase activity [GO:0016874]; metabolic process [GO:0008152] locus:2034403;,locus:2176662; AT1G20500,AT5G38120,AT1G20490 AMP-binding enzyme NA NA NA NA NA NA NA ENOG411EAN5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Basic region leucine zipper NA NA NA NA NA NA NA ENOG411EAN8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF NA NA NA NA NA NA NA ENOG411EAN9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyruvate phosphate dikinase PEP/pyruvate binding domain NA NA NA NA NA NA NA ENOG411E6QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRAL/TRIO domain NA NA NA NA NA NA NA ENOG411E6QC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CHCH domain containing protein Os01g0224300 protein Q5NAG7 Q5NAG7_ORYSJ Os01g0224300 Os01g0224300 OsJ_00942 OSNPB_010224300 P0417G05.35 P0492F05.1 ENOG411E6QD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0738000 protein (cDNA clone:001-102-G12, full insert sequence) Q5JND2 Q5JND2_ORYSJ Os01g0738000 OsJ_03385 OSJNBb0021A09.23 OSNPB_010738000 ENOG411E6QK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6QN CML24,CML23 P25070,Q9C8Y1 CML24_ARATH,CML23_ARATH Calcium-binding protein CML24 (Calmodulin-like protein 24) (Touch-induced calmodulin-related protein 2),Probable calcium-binding protein CML23 (Calmodulin-like protein 23) FUNCTION: Calcium-binding protein that may positively regulate abscisic acid (ABA) inhibition of germination and seedling development. May be required for photoperiod-induced flowering and function in ion homeostasis. {ECO:0000269|PubMed:16113225}.,FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 17546,17654 Calcium-binding protein CML24 (Calmodulin-like protein 24) (Touch-induced calmodulin-related protein 2),Probable calcium-binding protein CML23 (Calmodulin-like protein 23) plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; innate immune response [GO:0045087]; long-day photoperiodism, flowering [GO:0048574]; regulation of flower development [GO:0009909]; regulation of nitric oxide metabolic process [GO:0080164]; response to abscisic acid [GO:0009737]; response to absence of light [GO:0009646]; response to auxin [GO:0009733]; response to calcium ion [GO:0051592]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to hydrogen peroxide [GO:0042542]; response to mechanical stimulus [GO:0009612]; response to metal ion [GO:0010038],calcium ion binding [GO:0005509]; regulation of flower development [GO:0009909]; regulation of nitric oxide metabolic process [GO:0080164] TISSUE SPECIFICITY: Expressed in seed coat, seedling radical, cotyledons, hypocotyl, shoot apex and elongating root. Expressed in the vasculature of cotyledons, leaves and roots. Highly expressed in guard cells, trichomes and hydathodes. Expressed in inflorescence stem branch points, silique abscission zone, young and mature styles and stigmatic papillae, mature anthers and developing seed. {ECO:0000269|PubMed:16113225}. locus:2156040;,locus:2201542; AT5G37770,AT1G66400 Pfam:efhand NA NA NA NA NA NA NA ENOG411E6QM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E6QZ T17J13.150 Q9M1Q5,C0Z334,A0A1I9LS95,A0A1I9LS96 Q9M1Q5_ARATH,C0Z334_ARATH,A0A1I9LS95_ARATH,A0A1I9LS96_ARATH AT3g62190/T17J13_150 (Chaperone DnaJ-domain superfamily protein) (Uncharacterized protein T17J13.150),AT3G62190 protein (Chaperone DnaJ-domain superfamily protein),Chaperone DnaJ-domain superfamily protein 15469,8790,10425,7742 AT3g62190/T17J13_150 (Chaperone DnaJ-domain superfamily protein) (Uncharacterized protein T17J13.150),AT3G62190 protein (Chaperone DnaJ-domain superfamily protein),Chaperone DnaJ-domain superfamily protein integral component of membrane [GO:0016021] locus:2098043; AT3G62190 Heat shock protein DnaJ Os07g0637100 protein,Os07g0637150 protein (Fragment) Q0D4B0,A0A0P0X994 Q0D4B0_ORYSJ,A0A0P0X994_ORYSJ Os07g0637100 Os07g0637100 OSNPB_070637100,Os07g0637150 OSNPB_070637150 ENOG411E6QX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glucose-6-phosphate phosphate and phosphoenolpyruvate phosphate antiporter (ISS) NA NA NA NA NA NA NA ENOG411E6Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DQWD DAPF Q9LFG2 DAPF_ARATH Diaminopimelate epimerase, chloroplastic (DAP epimerase) (EC 5.1.1.7) FUNCTION: Racemase that operates by a 'two-base' mechanism, which involves one active-site cysteine acting as a base to abstract the alpha-proton of an amino acid, while a second cysteine thiol functions as an acid to reprotonate the resulting planar carbanionic intermediate from the opposite face. {ECO:0000269|PubMed:15652176}. MISCELLANEOUS: This enzyme requires no cofactors. PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. ARA:AT3G53580-MONOMER; 5.1.1.7; 5.1.1.7 38984 Diaminopimelate epimerase, chloroplastic (DAP epimerase) (EC 5.1.1.7) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; diaminopimelate epimerase activity [GO:0008837]; lysine biosynthetic process via diaminopimelate [GO:0009089] locus:2084011; AT3G53580 Diaminopimelate epimerase Diaminopimelate epimerase, chloroplastic (DAP epimerase) (EC 5.1.1.7) Q2QNF7 DAPF_ORYSJ DAPF Os12g0567200 LOC_Os12g37960 OsJ_035115 ENOG411DQWG ARF13,ARF15,ARF23,ARF21,ARF9,ARF14,ARF12,ARF20,ARF22 Q9FX25,Q9LQE3,Q9LP07,Q9C8N9,Q9XED8,Q9LQE8,Q9XID4,Q9C7I9,Q9C8N7,F4HT52 ARFM_ARATH,ARFO_ARATH,ARFW_ARATH,ARFU_ARATH,ARFI_ARATH,ARFN_ARATH,ARFL_ARATH,ARFT_ARATH,ARFV_ARATH,F4HT52_ARATH Auxin response factor 13,Putative auxin response factor 15,Putative auxin response factor 23,Putative auxin response factor 21,Auxin response factor 9,Putative auxin response factor 14,Auxin response factor 12,Auxin response factor 20,Auxin response factor 22,Auxin response factor no obvious auxin-related growth phenotype FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.,FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. 70995,67421,24821,68779,72278,68618,67218,66970,67733,62370 Auxin response factor 13,Putative auxin response factor 15,Putative auxin response factor 23,Putative auxin response factor 21,Auxin response factor 9,Putative auxin response factor 14,Auxin response factor 12,Auxin response factor 20,Auxin response factor 22,Auxin response factor nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. locus:2037169;,locus:2009298;,locus:2138096;,locus:2014731;,locus:2026145;,locus:2206717;,locus:2036288;,locus:2008991; AT1G34170,AT1G35520,AT1G43950,AT1G34410,AT4G23980,AT1G35540,AT1G34310,AT1G35240,AT1G34390 auxin response factor Auxin response factor 1 (OsARF16) Q5NB85 ARFA_ORYSJ ARF1 ARF16 Os01g0236300 LOC_Os01g13520 P0708G02.26 FUNCTION: Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). ENOG411DQWN NAC012 Q9LPI7 NAC12_ARATH NAC domain-containing protein 12 (ANAC012) (Protein NAC SECONDARY WALL THICKENING PROMOTING 3) (Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 1) Plants are indehiscent because siliques lack secondary walls except in vascular vessels.,Under short-day conditions the nst1-1 nst3-1 plants were no longer able to remain upright when they reached >15cmin height neither lignin nor cellulose which constitute secondary walls was produced in inflorescence stems of nst1-1 nst3-1 plants FUNCTION: Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}. 41520 NAC domain-containing protein 12 (ANAC012) (Protein NAC SECONDARY WALL THICKENING PROMOTING 3) (Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; fruit dehiscence [GO:0010047]; plant-type secondary cell wall biogenesis [GO:0009834]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Stems and roots, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels (cambium), and xylem. {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17565617}. locus:2035604; AT1G32770 NAC domain protein IPR003441Wood-associated NAC domain transcription factor NA NA NA NA NA NA NA ENOG411DQWH SPPL4,SPPL2 Q0WMJ8,Q8W469,F4HU44,F4I3Q0 SIPL4_ARATH,SIPL2_ARATH,F4HU44_ARATH,F4I3Q0_ARATH Signal peptide peptidase-like 4 (AtSPPL4) (EC 3.4.23.-),Signal peptide peptidase-like 2 (AtSPPL2) (EC 3.4.23.-),SIGNAL PEPTIDE PEPTIDASE-LIKE 4,SIGNAL PEPTIDE PEPTIDASE-LIKE 2 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. {ECO:0000250}. 3.4.23.- 59971,59837,44625,59867 Signal peptide peptidase-like 4 (AtSPPL4) (EC 3.4.23.-),Signal peptide peptidase-like 2 (AtSPPL2) (EC 3.4.23.-),SIGNAL PEPTIDE PEPTIDASE-LIKE 4,SIGNAL PEPTIDE PEPTIDASE-LIKE 2 endosome membrane [GO:0010008]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; aspartic-type endopeptidase activity [GO:0004190],endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; aspartic-type endopeptidase activity [GO:0004190],integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190],endosome [GO:0005768]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; aspartic-type endopeptidase activity [GO:0004190] DEVELOPMENTAL STAGE: Expressed in the shoot meristem and root epidermal cells in germinating seeds. {ECO:0000269|PubMed:18067581}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18067581}. locus:2198155;,locus:2026684; AT1G01650,AT1G63690 signal peptide peptidase-like Signal peptide peptidase-like 4 (OsSPPL4) (EC 3.4.23.-),Signal peptide peptidase-like 5 (OsSPPL5) (EC 3.4.23.-) Q0DWA9,Q5Z413 SIPL4_ORYSJ,SIPL5_ORYSJ SPPL4 Os02g0823000 LOC_Os02g57710 OJ1136_C04.4 OsJ_08929,SPPL5 Os06g0730900 LOC_Os06g51430 B1206D04.13 OsJ_22746 OSJNBa0069C14.36 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. {ECO:0000250}. ENOG411DQWI MNF13.1 Q9FM47,A0A1P8BDM9 Q9FM47_ARATH,A0A1P8BDM9_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein (Ribonucleoprotein-like) (Similarity to RNA binding protein),RNA-binding (RRM/RBD/RNP motifs) family protein 42408,40786 RNA-binding (RRM/RBD/RNP motifs) family protein (Ribonucleoprotein-like) (Similarity to RNA binding protein),RNA-binding (RRM/RBD/RNP motifs) family protein cytosol [GO:0005829]; intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]; mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; pre-mRNA intronic binding [GO:0097157]; mRNA polyadenylation [GO:0006378]; positive regulation of long-day photoperiodism, flowering [GO:0048578]; positive regulation of short-day photoperiodism, flowering [GO:0048576],RNA binding [GO:0003723] locus:2168848; AT5G40490 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411DQWJ AP2M,adaptor protein-2 mu-adaptin O23140,F4KHJ7 AP2M_ARATH,F4KHJ7_ARATH AP-2 complex subunit mu (Adaptor protein complex AP-2 subunit mu) (Adaptor protein-2 mu-adaptin) (Adaptor-related protein complex 2 subunit mu) (At-muA-Ad) (Clathrin assembly protein complex 2 mu medium chain) (Mu2-adaptin) (Protein AP47/50) (AtAP47/50),Clathrin adaptor complexes medium subunit family protein FUNCTION: Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. AP-2 recognizes Y-X-X-Phi endocytosis signal motif within the cytosolic tails of transmembrane cargo molecules. The complex binds polyphosphoinositides. {ECO:0000269|PubMed:14871308}. R-ATH-8856825;R-ATH-8856828; Endocytosis (04144),Huntington's disease (05016),Synaptic vesicle cycle (04721),Endocrine and other factor-regulated calcium reabsorption (04961) 49322,49472 AP-2 complex subunit mu (Adaptor protein complex AP-2 subunit mu) (Adaptor protein-2 mu-adaptin) (Adaptor-related protein complex 2 subunit mu) (At-muA-Ad) (Clathrin assembly protein complex 2 mu medium chain) (Mu2-adaptin) (Protein AP47/50) (AtAP47/50),Clathrin adaptor complexes medium subunit family protein clathrin adaptor complex [GO:0030131]; clathrin-coated pit [GO:0005905]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; lipid binding [GO:0008289]; endocytosis [GO:0006897]; intracellular protein transport [GO:0006886],clathrin adaptor complex [GO:0030131]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; endocytosis [GO:0006897]; intracellular protein transport [GO:0006886] locus:2178500; AT5G46630 AP-2 complex subunit Os02g0690700 protein (Putative Clathrin coat assembly protein AP50) (cDNA clone:J033091B08, full insert sequence) Q6ZGX8 Q6ZGX8_ORYSJ Os02g0690700 Os02g0690700 OJ1743_B12.40 OsJ_07994 OSNPB_020690700 ENOG411DQWT Q8GUP0 Q8GUP0_ARATH Tetratricopeptide repeat (TPR)-containing protein (Uncharacterized protein At1g17680) 102748 Tetratricopeptide repeat (TPR)-containing protein (Uncharacterized protein At1g17680) transcription factor TFIIIC complex [GO:0000127]; regulation of transcription from RNA polymerase III promoter [GO:0006359]; transcription from RNA polymerase III promoter [GO:0006383] locus:2007928; AT1G17680 general transcription factor 3C polypeptide Os11g0266800 protein (TPR Domain containing protein, expressed) Q2R7H8 Q2R7H8_ORYSJ LOC_Os11g16540 Os11g0266800 OSNPB_110266800 ENOG411DQWU BCA5 Q94CE3 BCA5_ARATH Beta carbonic anhydrase 5, chloroplastic (AtbCA5) (AtbetaCA5) (EC 4.2.1.1) (Beta carbonate dehydratase 5) FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000250}. 4.2.1.1 33401 Beta carbonic anhydrase 5, chloroplastic (AtbCA5) (AtbetaCA5) (EC 4.2.1.1) (Beta carbonate dehydratase 5) chloroplast [GO:0009507]; carbonate dehydratase activity [GO:0004089]; zinc ion binding [GO:0008270]; carbon utilization [GO:0015976] TISSUE SPECIFICITY: Strongly expressed in aerial tissues including leaves, stems, flowers and siliques. {ECO:0000269|PubMed:17407539}. locus:2134218; AT4G33580 carbonic anhydrase Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) Q69MC9 Q69MC9_ORYSJ Os09g0464000 OsJ_29668 OSJNBb0019B14.24 OSNPB_090464000 FUNCTION: Reversible hydration of carbon dioxide. {ECO:0000256|RuleBase:RU003956}. ENOG411DQWR MFP2 Q9ZPI5 MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 (AtMPF2) [Includes: Enoyl-CoA hydratase/3-2-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3) (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] DISRUPTION PHENOTYPE: Accumulation of long-chain acyl-CoA substrates and increased size of peroxisomes. {ECO:0000269|PubMed:16507084}. Has a sucrose-dependent seedling growth phenotype. Growth arrested 3-4 days after germination in the light on medium without sucrose. In the dark hypocotyl growth is significantly less than the wild type. Has less than 2% of L-3-hydroxyacyl-CoA dehydrogenase activity and reduced 2-trans-enoyl-CoA hydratase activity towards long chain enoyl-CoAs. Accumulated 2.5-fold more long chain acyl-CoAs in 5-day-old seedlings. Has fewer but larger peroxisomes. Seedling lethal without exogenous sucrose-I. Graham-2006 FUNCTION: Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18) (PubMed:10521521, PubMed:16507084, PubMed:20463021). Possesses 3-hydroxy-3-phenylpropionyl-CoA dehydrogenase activity and is involved in the peroxisomal beta-oxidation pathway for the biosynthesis of benzoic acid (BA). Required for the accumulation in seeds of substituted hydroxybenzoylated choline esters, which are BA-containing secondary metabolites (PubMed:24254312). {ECO:0000269|PubMed:10521521, ECO:0000269|PubMed:16507084, ECO:0000269|PubMed:20463021, ECO:0000269|PubMed:24254312}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. ARA:AT3G06860-MONOMER;MetaCyc:AT3G06860-MONOMER; R-ATH-390247; 4.2.1.17; 5.1.2.3; 5.3.3.8; 1.1.1.35 78840 Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 (AtMPF2) [Includes: Enoyl-CoA hydratase/3-2-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3) (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] cell wall [GO:0005618]; glyoxysome [GO:0009514]; nucleolus [GO:0005730]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; 3-hydroxyacyl-CoA dehydrogenase activity [GO:0003857]; 3-hydroxybutyryl-CoA epimerase activity [GO:0008692]; dodecenoyl-CoA delta-isomerase activity [GO:0004165]; enoyl-CoA hydratase activity [GO:0004300]; long-chain-enoyl-CoA hydratase activity [GO:0016508]; fatty acid beta-oxidation [GO:0006635] DEVELOPMENTAL STAGE: Expression increases rapidly during seed germination to reach a peak at 2-3 days after imbibition (DAI) and then declines to basal levels at 5 DAI. {ECO:0000269|PubMed:10816107}. TISSUE SPECIFICITY: Highly expressed in senescing leaves and at lower levels in flowers and siliques. {ECO:0000269|PubMed:10816107}. locus:2077542; AT3G06860 fatty acid beta-oxidation multifunctional protein Os05g0362100 protein (Putative glyoxysomal fatty acid beta-oxidation multifunctional protein) (cDNA clone:J023006O04, full insert sequence),Os05g0155000 protein,Glyoxysomal fatty acid beta-chain multifunctional protein (Os01g0348600 protein) (Putative tetrafunctional protein of glyoxysomal fatty acid beta-oxidation) (cDNA clone:J023090D07, full insert sequence),Os01g0348600 protein (Fragment) Q60E84,Q0DKM2,Q94CN1,A0A0P0V2S6,A0A0P0V2N1 Q60E84_ORYSJ,Q0DKM2_ORYSJ,Q94CN1_ORYSJ,A0A0P0V2S6_ORYSJ,A0A0P0V2N1_ORYSJ Os05g0362100 Os05g0362100 OSNPB_050362100 P0692D12.11,Os05g0155000 Os05g0155000 OSNPB_050155000,Os01g0348600 Os01g0348600 B1051E10.10 OsJ_01677 OSNPB_010348600 P0440D10.31,Os01g0348600 OSNPB_010348600 ENOG411DQWZ REIL2,REIL1,REI1-LIKE 1 Q9ZQ18,Q8H1G5,F4JS04 REIL2_ARATH,REIL1_ARATH,F4JS04_ARATH Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 (Protein REI1-LIKE 2) (pre-60S factor REI1 homolog 2),Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 (Protein REI1-LIKE 1) (pre-60S factor REI1 homolog 1),Zinc finger protein 622 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. When grown at 10 degrees Celsius, the double mutant seedlings reil1-1 and reil2-1 show growth arrest at two cotyledon stage and die. {ECO:0000269|PubMed:24038679}. FUNCTION: Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250|UniProtKB:P38344, ECO:0000269|PubMed:24038679}. 44987,45998,46085 Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 (Protein REI1-LIKE 2) (pre-60S factor REI1 homolog 2),Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 (Protein REI1-LIKE 1) (pre-60S factor REI1 homolog 1),Zinc finger protein 622 cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; ribosomal large subunit biogenesis [GO:0042273],cytoplasm [GO:0005737]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; ribosomal large subunit biogenesis [GO:0042273],cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687]; nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355] locus:2061087;,locus:2128161; AT2G24500,AT4G31420 zinc finger protein Os06g0693500 protein (Zinc finger protein-like) (cDNA clone:J033121H12, full insert sequence),Os06g0693600 protein Q5Z8K9,A0A0P0X0A8 Q5Z8K9_ORYSJ,A0A0P0X0A8_ORYSJ Os06g0693500 Os06g0693500 OsJ_22468 OSNPB_060693500 P0550B04.17,Os06g0693600 OSNPB_060693600 ENOG411DQW4 MYN21.7 Q93XX1 Q93XX1_ARATH Transmembrane protein C9orf5 protein (Uncharacterized protein At5g55960) (Uncharacterized protein At5g55960; MYN21.7) 71638 Transmembrane protein C9orf5 protein (Uncharacterized protein At5g55960) (Uncharacterized protein At5g55960; MYN21.7) integral component of membrane [GO:0016021] locus:2178378; AT5G55960 Domain of unknown function DUF20 Os06g0297700 protein A0A0P0WVJ4 A0A0P0WVJ4_ORYSJ Os06g0297700 OSNPB_060297700 ENOG411DQW5 PVA13 Q84WW5,A0A1P8B930 VAP13_ARATH,A0A1P8B930_ARATH Vesicle-associated protein 1-3 (Plant VAP homolog 13) (AtPVA13) (VAMP-associated protein 1-3) [Cleaved into: Vesicle-associated protein 1-3, N-terminally processed],Plant VAMP (Vesicle-associated membrane protein) family protein FUNCTION: May play a role in vesicle trafficking. {ECO:0000250}. R-ATH-6798695; 26374,23341 Vesicle-associated protein 1-3 (Plant VAP homolog 13) (AtPVA13) (VAMP-associated protein 1-3) [Cleaved into: Vesicle-associated protein 1-3, N-terminally processed],Plant VAMP (Vesicle-associated membrane protein) family protein endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2126921; AT4G00170 vesicle-associated Os08g0155100 protein (Putative 27k vesicle-associated membrane protein-associated protein) (cDNA clone:001-045-A07, full insert sequence) (cDNA clone:J023037M15, full insert sequence) Q6ZJR5 Q6ZJR5_ORYSJ Os08g0155100 OJ1177_E11.5 OSNPB_080155100 ENOG411DQW6 CBSCBSPB3,CBSCBSPB5,CBSCBSPB4,CBSCBSPB2,CBSCBSPB1 Q9LF97,P0DH79,Q0WLC7,Q9SJQ5,Q9FMV3 Y3295_ARATH,Y5064_ARATH,Y5053_ARATH,Y2650_ARATH,Y5349_ARATH CBS domain-containing protein CBSCBSPB3,CBS domain-containing protein CBSCBSPB5,CBS domain-containing protein CBSCBSPB4,CBS domain-containing protein CBSCBSPB2,CBS domain-containing protein CBSCBSPB1 60026,59812,58448,59435 CBS domain-containing protein CBSCBSPB3,CBS domain-containing protein CBSCBSPB5,CBS domain-containing protein CBSCBSPB4,CBS domain-containing protein CBSCBSPB2,CBS domain-containing protein CBSCBSPB1 integral component of membrane [GO:0016021] locus:2085166;,locus:2832461;,locus:2159762;,locus:2044840;,locus:2167331; AT3G52950,AT5G50640,AT5G50530,AT2G36500,AT5G63490 CBS domain-containing protein Os01g0923300 protein,CBS domain-containing protein, putative, expressed (Os11g0170300 protein) (cDNA, clone: J065042D15, full insert sequence),CBS domain-containing protein, putative, expressed (Os12g0169400 protein) C7IWB6,Q2RA11,Q2QX49 C7IWB6_ORYSJ,Q2RA11_ORYSJ,Q2QX49_ORYSJ Os01g0923300 Os01g0923300 OSNPB_010923300,Os11g0170300 LOC_Os11g06930 OsJ_33116 OSNPB_110170300,LOC_Os12g07190 Os12g0169400 OSNPB_120169400 ENOG411DQW7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC-2 type transporter ABC transporter-like protein (Os07g0139150 protein),Os05g0120000 protein,Os05g0120200 protein Q8GVZ7,Q0DL71,B9FGJ2 Q8GVZ7_ORYSJ,Q0DL71_ORYSJ,B9FGJ2_ORYSJ OJ1417_E01.117 Os07g0139150 OSNPB_070139150 P0495H05.57,Os05g0120000 Os05g0120000 OsJ_16923 OSNPB_050120000,Os05g0120200 OsJ_16925 OSNPB_050120200 ENOG411DQW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Os02g0653400 protein (Transferase-like),Os08g0352250 protein (Fragment) Q6H8G5,A0A0P0XEZ3 Q6H8G5_ORYSJ,A0A0P0XEZ3_ORYSJ Os02g0653400 Os02g0653400 OSNPB_020653400 P0491E01.32,Os08g0352250 OSNPB_080352250 ENOG411DQW9 Q9LTN0,Q66GP7,A0A1I9LS67,F4JBE4 Q9LTN0_ARATH,Q66GP7_ARATH,A0A1I9LS67_ARATH,F4JBE4_ARATH Cellulase (Glycosyl hydrolase family 5) protein,At1g13130 (Cellulase (Glycosyl hydrolase family 5) protein) 64315,61547,63287,63133 Cellulase (Glycosyl hydrolase family 5) protein,At1g13130 (Cellulase (Glycosyl hydrolase family 5) protein) integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2031850;,locus:2093551; AT1G13130,AT3G26130 (glycosyl hydrolase family 5) protein OSJNBb0011N17.5 protein (Os04g0480900 protein) (cDNA clone:002-149-E03, full insert sequence),Os04g0481200 protein,Os04g0481000 protein Q7XUQ7,A0A0P0WBG8,A0A0P0WC24 Q7XUQ7_ORYSJ,A0A0P0WBG8_ORYSJ,A0A0P0WC24_ORYSJ Os04g0480900 Os04g0480900 OsJ_15210 OSJNBb0011N17.5 OSNPB_040480900,Os04g0481200 OSNPB_040481200,Os04g0481000 OSNPB_040481000 ENOG411ECQ2 O80777,Q9LX89,Q9M121 FB126_ARATH,FB255_ARATH,Q9M121_ARATH F-box protein At2g34280,F-box protein At5g10340,F-box associated ubiquitination effector family protein (Uncharacterized protein AT4g01640) 45428,50813,34828 F-box protein At2g34280,F-box protein At5g10340,F-box associated ubiquitination effector family protein (Uncharacterized protein AT4g01640) locus:2040829;,locus:2142539;,locus:2133437; AT2G34280,AT5G10340,AT4G01640 F-box associated NA NA NA NA NA NA NA ENOG411ECQ0 ZAT12 Q42410 ZAT12_ARATH Zinc finger protein ZAT12 (Protein RESPONSIVE TO HIGH LIGHT 41) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but enhanced tolerance to heat stress and increased sensitivity to salt stress. {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:16183833}. FUNCTION: Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. MISCELLANEOUS: Plants overexpressing ZAT12 show thick and dark-green leaves with round shape, short petiole, elevated amounts of anthocyanins and enhanced tolerance to high-light irradiation and oxidative stress. 17332 Zinc finger protein ZAT12 (Protein RESPONSIVE TO HIGH LIGHT 41) nucleus [GO:0005634]; metal ion binding [GO:0046872]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cold acclimation [GO:0009631]; hyperosmotic salinity response [GO:0042538]; photosynthetic acclimation [GO:0009643]; response to chitin [GO:0010200]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to light stimulus [GO:0009416]; response to oxidative stress [GO:0006979]; response to UV-B [GO:0010224]; response to wounding [GO:0009611]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. locus:2168073; AT5G59820 responsive to high light 41 NA NA NA NA NA NA NA ENOG411EM9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411ECQ6 SPL15 Q9M2Q6 SPL15_ARATH Squamosa promoter-binding-like protein 15 Accelerated heteroblasty. Leaves have increased number of cells and decreased cell size in leaves at higher nodes.,Increased rate of leaf initiation. Reduced apical dominance. Slightly later flowering than normal sibs. Dwarf; Increased rosette leaf number-P. Huijser-2008 FUNCTION: Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. 39672 Squamosa promoter-binding-like protein 15 nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; anther development [GO:0048653]; regulation of cell proliferation [GO:0042127]; regulation of cell size [GO:0008361]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351]; vegetative to reproductive phase transition of meristem [GO:0010228] DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. locus:2095793; AT3G57920 SBP domain NA NA NA NA NA NA NA ENOG411E88M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEE1 NPR6,NPR5,BOP1 Q9M1I7,Q9ZVC2,F4J257 NPR6_ARATH,NPR5_ARATH,F4J257_ARATH Regulatory protein NPR6 (BTB/POZ domain-containing protein NPR6) (Protein BLADE-ON-PETIOLE 1),Regulatory protein NPR5 (BTB/POZ domain-containing protein NPR5) (Protein BLADE ON PETIOLE 2),Ankyrin repeat family protein / BTB/POZ domain-containing protein DISRUPTION PHENOTYPE: Defects in rosette leaf development. bop1 and bop2 double mutant displays leafy petioles, loss of floral organ abscission, and asymmetric flowers subtended by a bract. {ECO:0000269|PubMed:15800002, ECO:0000269|PubMed:15805484, ECO:0000269|PubMed:17601823, ECO:0000269|PubMed:18339677}.,DISRUPTION PHENOTYPE: Defects in inflorescence and flower development. Bop1 and bop2 double mutant displays leafy petioles, loss of floral organ abscission, and asymmetric flowers subtended by a bract. {ECO:0000269|PubMed:15800002, ECO:0000269|PubMed:15805484, ECO:0000269|PubMed:17601823, ECO:0000269|PubMed:18339677}. LBD36/ASL1 transcript levels were reduced in bop1-1 plants.,Mutant leaves are misshapen and display ectopic outgrowths along the petiole and the base of the blade.,Slightly semi-dominant with respect to leaf morphogenesis.,bop1-3 plants which have slightly reduced BOP1 transcript levels have a weak phenotype. This phenotype consists of a single ectopic outgrowth from the leaf petiole region in approximately 2-3% of the homozygous plants.,Cauline leaves of bop1 frequently developed ectopic outgrowths from the basal region.,Mutant plants have a weak phenotype displaying a single ectopic leaf outgrowth and mild leaf lobing in a proportion similar to that in bop1-3 plants.,Plants displayed defects in inflorescence development.,Double mutant inflorescences displayed slightly enhanced phenotypes compared with those of either single mutant.,Double mutant plants displayed an enhanced cauline leaf outgrowth phenotype compared with bop1-4 plants.,LBD36/ASL1 transcript levels were not reduced in bop1-4 bop2-11 plants.,Mutant leaf petioles displayed clusters of densely cytoplasmic undifferentiated cells on the adaxial side coincident with the development of ectopic outgrowths.,Mutant plants developed extensive ectopic blade outgrowths along the rosette leaf petiole like those observed in homozygous bop1-1 plants.,The stem vasculature in bop1 bop2 plants showed normal vein morphology.,Whereas the gynoecium of wild-type flowers consists of two fused carpels ~50% of bop1-4 bop2-11 gynoecia contained only a single fertile carpel.,The rosette leaf petioles of the triple mutant plants showed extensive ectopic outgrowth formation in the marginal region and some outgrowths exhibited a strongly radialized character.,The vascular patterning defects in the triple mutant leaf petioles were greatly enhanced compared with those of the parental plants.,About nine-tenths of the mutants exhibited abaxialized vasculature. The exclusively adaxialized vasculature observed in kan1 kan2 petioles was not detected in bop1 bop2 kan1 kan2 petioles. The radialized portion of bop1 bop2 kan1 kan2 leaves showed various kinds of organ polarity defects. The vascular bundles of nearly half of the leaves (44.0%) consisted of phloem surrounded by xylem while one-third (36.0%) displayed xylem surrounded by phloem and a small percentage (16.0%) had a mixture of both types of vasculature.,Quadruple mutant plants developed narrow leaves with ectopic blade outgrowth along the petioles like bop1 bop2 leaves as well as ectopic outgrowths on their abaxial lamina like kan1 kan2 leaves. However all of the bop1 bop2 kan1 kan2 leaves also showed extended radialized petiole development that was not observed in either parental genotype.,bop1 bop2 kan1 kan2 stems had a decreased ratio of adaxialized vascular phenotypes compared with kan1 kan2 stems. Similar to what was observed in petioles 6.7% of bop1 bop2 kan1 kan2 stems exhibited an abaxialized phenotype of xylem surrounded by phloem while others (13.3%) had both types of vasculature in a single stem.,Cauline leaves of bop2 plants do not develop ectopic outgrowths from the basal region.,Plants frequently formed fused and/or fasciated inflorescences and generated multiple flowers from the same node. Ectopic organ outgrowths on the basal portion of cauline leaves and the petioles of cotyledons and rosette leaves; Fused rosette leaf petioles; Reduced leaf number; Abnormal floral organ number and morphology; Delayed senescence-H. Nam-2003,Fused, fasciated stems and inflorescences; Incomplete penetrance of multiple flowers developing at one node-J. Fletcher-2007 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts redundantly with BOP2. BOP1/2 promote leaf and floral meristem fate and determinacy in a pathway targeting AP1 and AGL24. BOP1/2 act as transcriptional co-regulators through direct interaction with TGA factors, including PAN, a direct regulator of AP1. Controls lateral organ fate through positive regulation of adaxial-abaxial polarity genes ATHB-14/PHB, YAB1/FIL and YAB3, and through positive regulation of LOB domain-containing genes LOB, LBD6/AS2 and LBD36. Promotes and maintains a developmentally determinate state in leaf cells through the negative regulation of JAG, JGL and class I KNOX genes. Is also involved in nectary development, formation of normal abscission zones and suppression of bract formation. {ECO:0000250, ECO:0000269|PubMed:12441300, ECO:0000269|PubMed:15564519, ECO:0000269|PubMed:15800002, ECO:0000269|PubMed:15805484, ECO:0000269|PubMed:17601823, ECO:0000269|PubMed:18339677, ECO:0000269|PubMed:20118228, ECO:0000269|PubMed:20610407, ECO:0000269|PubMed:20626659}.,FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts redundantly with BOP2. BOP1/2 promote leaf and floral meristem fate and determinacy in a pathway targeting AP1 and AGL24. BOP1/2 act as transcriptional co-regulators through direct interaction with TGA factors, including PAN, a direct regulator of AP1. Controls lateral organ fate through positive regulation of adaxial-abaxial polarity genes ATHB-14/PHB, YAB1/FIL and YAB3, and through positive regulation of LOB domain-containing genes LOB, LBD6/AS2 and LBD36. Promotes and maintains a developmentally determinate state in leaf cells through the negative regulation of JAG, JGL and class I KNOX genes. Is also involved in nectary development, formation of normal abscission zones and suppression of bract formation. {ECO:0000250, ECO:0000269|PubMed:15800002, ECO:0000269|PubMed:15805484, ECO:0000269|PubMed:17601823, ECO:0000269|PubMed:18339677, ECO:0000269|PubMed:20118228, ECO:0000269|PubMed:20610407, ECO:0000269|PubMed:20626659}. PATHWAY: Protein modification; protein ubiquitination. 51785,54001,20269 Regulatory protein NPR6 (BTB/POZ domain-containing protein NPR6) (Protein BLADE-ON-PETIOLE 1),Regulatory protein NPR5 (BTB/POZ domain-containing protein NPR5) (Protein BLADE ON PETIOLE 2),Ankyrin repeat family protein / BTB/POZ domain-containing protein cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; bract formation [GO:0010434]; floral meristem determinacy [GO:0010582]; floral organ abscission [GO:0010227]; flower morphogenesis [GO:0048439]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; leaf morphogenesis [GO:0009965]; meristem determinacy [GO:0010022]; nectary development [GO:0010254]; polarity specification of adaxial/abaxial axis [GO:0009944]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; proximal/distal pattern formation [GO:0009954]; regulation of proteolysis [GO:0030162],cytoplasm [GO:0005737]; nucleus [GO:0005634]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; bract formation [GO:0010434]; floral meristem determinacy [GO:0010582]; floral organ abscission [GO:0010227]; flower morphogenesis [GO:0048439]; induced systemic resistance, jasmonic acid mediated signaling pathway [GO:0009864]; nectary development [GO:0010254]; polarity specification of adaxial/abaxial axis [GO:0009944]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; proximal/distal pattern formation [GO:0009954]; regulation of proteolysis [GO:0030162] DEVELOPMENTAL STAGE: Initially detectable in embryos with a localization to the base of the developing cotyledons near the SAM. Expressed during vegetative development in young leaf primordia and at the base of the rosette leaves on the adaxial side. Expressed during reproductive development in young floral buds, and at the base of the sepals and petals. {ECO:0000269|PubMed:15564519}.,DEVELOPMENTAL STAGE: Expressed during vegetative development in young leaf primordia and at the base of the rosette leaves on the adaxial side. Expressed during reproductive development in young floral buds, and at the base of the sepals and petals. {ECO:0000269|PubMed:15800002}. TISSUE SPECIFICITY: Highly expressed in young floral meristem. {ECO:0000269|PubMed:15805484}. locus:2080595;,locus:2040292; AT3G57130,AT2G41370 Domain of unknown function (DUF3420) NA NA NA NA NA NA NA ENOG411EEPB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EEPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411EEPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tim17/Tim22/Tim23/Pmp24 family Os05g0111200 protein (Putative amino acid selective channel protein) (cDNA clone:J033059M19, full insert sequence),Os01g0974100 protein Q65XV6,A0A0P0VDD8 Q65XV6_ORYSJ,A0A0P0VDD8_ORYSJ Os05g0111200 OsJ_16862 OSNPB_050111200 P0016H04.12,Os01g0974100 OSNPB_010974100 ENOG411ECQQ Q9M9C3 Q9M9C3_ARATH Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At1g68380) (Uncharacterized protein At1g68380/T2E12_7) (Uncharacterized protein T2E12.7) 46228 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase) (Uncharacterized protein At1g68380) (Uncharacterized protein At1g68380/T2E12_7) (Uncharacterized protein T2E12.7) integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2202329; AT1G68380 Core-2/I-Branching enzyme NA NA NA NA NA NA NA ENOG411ECQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411EEPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECQC O49316 FB122_ARATH Putative F-box protein At2g33190 43983 Putative F-box protein At2g33190 locus:2046495; AT2G33190 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411ECQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Prenyltransferase and squalene oxidase repeat NA NA NA NA NA NA NA ENOG411EEPU F9D24.210,F9D24.240 Q9M2I6,Q9M2I3 Q9M2I6_ARATH,Q9M2I3_ARATH Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein F9D24.210),Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein F9D24.240) 20661,19724 Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein F9D24.210),Phospholipase-like protein (PEARLI 4) family protein (Uncharacterized protein F9D24.240) locus:2085450;,locus:2085350; AT3G58300,AT3G58330 Inherit from KOG: meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411ECQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC Os11g0312100 protein,Os09g0284100 protein,Os05g0241600 protein,Os01g0247200 protein,Os10g0437300 protein,Os04g0557100 protein,Os10g0437366 protein,Os05g0241700 protein,Os11g0312160 protein,Os11g0511200 protein A0A0P0Y1L8,A0A0P0XKU1,A0A0P0WJN2,A0A0P0V0S3,A0A0P0XV44,A0A0P0WDD6,A0A0P0XVA8,A0A0N7KKE3,A0A0N7KST8,A0A0P0Y2U4 A0A0P0Y1L8_ORYSJ,A0A0P0XKU1_ORYSJ,A0A0P0WJN2_ORYSJ,A0A0P0V0S3_ORYSJ,A0A0P0XV44_ORYSJ,A0A0P0WDD6_ORYSJ,A0A0P0XVA8_ORYSJ,A0A0N7KKE3_ORYSJ,A0A0N7KST8_ORYSJ,A0A0P0Y2U4_ORYSJ Os11g0312100 OSNPB_110312100,Os09g0284100 OSNPB_090284100,Os05g0241600 OSNPB_050241600,Os01g0247200 OSNPB_010247200,Os10g0437300 OSNPB_100437300,Os04g0557100 OSNPB_040557100,Os10g0437366 OSNPB_100437366,Os05g0241700 OSNPB_050241700,Os11g0312160 OSNPB_110312160,Os11g0511200 OSNPB_110511200 ENOG411ECQE ABCC7 Q9LK62,A0A1I9LLY2 AB7C_ARATH,A0A1I9LLY2_ARATH ABC transporter C family member 7 (ABC transporter ABCC.7) (AtABCC7) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 7) (Glutathione S-conjugate-transporting ATPase 7) (Multidrug resistance-associated protein 7),Multidrug resistance-associated protein 7 FUNCTION: Pump for glutathione S-conjugates. {ECO:0000250}. ARA:AT3G13100-MONOMER; 3.6.3.44 167805,139605 ABC transporter C family member 7 (ABC transporter ABCC.7) (AtABCC7) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 7) (Glutathione S-conjugate-transporting ATPase 7) (Multidrug resistance-associated protein 7),Multidrug resistance-associated protein 7 integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626]; xenobiotic-transporting ATPase activity [GO:0008559]; response to other organism [GO:0051707]; transmembrane transport [GO:0055085],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; ATPase activity, coupled to transmembrane movement of substances [GO:0042626] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12430019}. locus:2090049; AT3G13100 ABC transporter transmembrane region NA NA NA NA NA NA NA ENOG411ECQJ Q4V3C5,Q4V3B0,A0A1P8B7D6,A8MS21 Q4V3C5_ARATH,Q4V3B0_ARATH,A0A1P8B7D6_ARATH,A8MS21_ARATH At4g22860 (Cell cycle regulated microtubule associated protein),At4g11990 (Cell cycle regulated microtubule associated protein),Cell cycle regulated microtubule associated protein 58161,57225,42284,57058 At4g22860 (Cell cycle regulated microtubule associated protein),At4g11990 (Cell cycle regulated microtubule associated protein),Cell cycle regulated microtubule associated protein microtubule [GO:0005874]; spindle [GO:0005819]; activation of protein kinase activity [GO:0032147]; regulation of mitotic spindle organization [GO:0060236] locus:2127203;,locus:2118076; AT4G22860,AT4G11990 Cell cycle regulated microtubule associated protein NA NA NA NA NA NA NA ENOG411ECQI NPF2.12,NPF2.13,NRT1.6 Q9LFX9,Q8RX77,A0A1P8AS80 PTR13_ARATH,PTR21_ARATH,A0A1P8AS80_ARATH Protein NRT1/ PTR FAMILY 2.12 (AtNPF2.12) (Nitrate transporter 1.6),Protein NRT1/ PTR FAMILY 2.13 (AtNPF2.13) (Nitrate transporter 1.7),Nitrate transporter 1.6 DISRUPTION PHENOTYPE: Aberrant embryo development and increased seed abortion. Reduced seed nitrate content. {ECO:0000269|PubMed:19050168}.,DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Growth retardation when starved of nitrogen. {ECO:0000269|PubMed:19734434}. mutant plants accumulate a higher amount of nitrate in older leaves; defective in remobilizing nitrate from older leaves to younger leaves. Reduced fertility-Y. Tsay-2008,Sensitive to nitrogen starvation; Elevated nitrogen levels in leaves; Reduced nitrogen transport-Y. Tsay-2009 FUNCTION: Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. {ECO:0000269|PubMed:19050168}.,FUNCTION: Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport, but has a weak glucosinolate transport activity. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. {ECO:0000269|PubMed:19734434, ECO:0000269|PubMed:22864417}. R-ATH-427975;R-ATH-6798695; 64930,68417,60361 Protein NRT1/ PTR FAMILY 2.12 (AtNPF2.12) (Nitrate transporter 1.6),Protein NRT1/ PTR FAMILY 2.13 (AtNPF2.13) (Nitrate transporter 1.7),Nitrate transporter 1.6 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; low-affinity nitrate transmembrane transporter activity [GO:0080054]; symporter activity [GO:0015293]; cellular response to nitrogen levels [GO:0043562]; embryo development ending in seed dormancy [GO:0009793]; low-affinity nitrate transport [GO:0080055]; nitrate assimilation [GO:0042128]; oligopeptide transport [GO:0006857]; seed development [GO:0048316]; suspensor development [GO:0010098],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; low-affinity nitrate transmembrane transporter activity [GO:0080054]; symporter activity [GO:0015293]; low-affinity nitrate transport [GO:0080055]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] DEVELOPMENTAL STAGE: Expression increases after pollination. {ECO:0000269|PubMed:19050168}. TISSUE SPECIFICITY: Expressed in flowers and siliques. Expressed in vascular bundle of the siliques and in funiculus. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:19050168}.,TISSUE SPECIFICITY: Expressed in leaves and flowers. Detected in stems and siliques. Highest expression in the distal lamina of older leaves. Restricted to the sieve element and companion cell complex of the minor vein. {ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:19734434}. locus:2205719;,locus:2196800; AT1G27080,AT1G69870 POT family NA NA NA NA NA NA NA ENOG411EEP3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EEP0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EEP1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tyrosine phosphatase family NA NA NA NA NA NA NA ENOG411EEP6 Q9LJK8 Q9LJK8_ARATH Uncharacterized protein 15985 Uncharacterized protein locus:2094073; AT3G19200 NA NA NA NA NA NA NA NA ENOG411EEP7 Q8GWD1 Q8GWD1_ARATH Ran BP2/NZF zinc finger-like superfamily protein (Uncharacterized protein At5g25490) (Uncharacterized protein At5g25490/T14C9_30) 18331 Ran BP2/NZF zinc finger-like superfamily protein (Uncharacterized protein At5g25490) (Uncharacterized protein At5g25490/T14C9_30) metal ion binding [GO:0046872] locus:2179479; AT5G25490 Zn-finger in Ran binding protein and others NA NA NA NA NA NA NA ENOG411EEP5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SCP NA NA NA NA NA NA NA ENOG411EBNU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 2 NA NA NA NA NA NA NA ENOG411E2B3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 'putative beta-1,3-glucanase (Os05g0375400 protein) (cDNA clone:001-034-H03, full insert sequence) Q75K72 Q75K72_ORYSJ Os05g0375400 OJ1005_E12.10 OsJ_18327 OSNPB_050375400 ENOG411E2B1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os04g0110100 protein (cDNA clone:001-102-D08, full insert sequence),OSJNBa0027H06.11 protein (Os04g0109500 protein) (cDNA clone:006-209-F07, full insert sequence) Q0JFE7,Q7XXF4 Q0JFE7_ORYSJ,Q7XXF4_ORYSJ Os04g0110100 Os04g0110100 OSNPB_040110100,Os04g0109500 Os04g0109500 OsJ_13535 OSJNBa0027H06.11 OSNPB_040109500 ENOG411E2B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr Os04g0379600 protein,Os02g0504700 protein Q0JDT2,A0A0P0VJG3 Q0JDT2_ORYSJ,A0A0P0VJG3_ORYSJ Os04g0379600 Os04g0379600 OSNPB_040379600,Os02g0504700 OSNPB_020504700 ENOG411E2B7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING finger and CHY zinc finger domain-containing protein E3 ubiquitin-protein ligase SRFP1 (OsSRFP1) (EC 2.3.2.27),CHY zinc finger family protein, expressed (Os03g0348900 protein) Q10LI1,Q10LI0 SRFP1_ORYSJ,Q10LI0_ORYSJ SRFP1 Os03g0348900 LOC_Os03g22680 OsJ_10832,Os03g0348900 LOC_Os03g22680 OSNPB_030348900 FUNCTION: Possesses E3 ubiquitin-protein ligase activity in vitro. Possesses transactivation activity in yeast cells. May modulate abiotic stress responses by negatively regulating antioxidant enzymes-mediated reactive oxygen species (ROS) removal. {ECO:0000269|PubMed:25667045}. MISCELLANEOUS: Plants silencing SRFP1 exhibit increased tolerance to salt, cold and oxidative stresses. Plants over-expressing SRFP1 show decreased tolerance to salt, cold and oxidative stresses. {ECO:0000269|PubMed:25667045}. ENOG411E2B6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serpin domain containing protein Putative serpin-Z5 (OrysaZ5),Putative serpin-Z6C (OrysaZ6c),Serpin-Z2A (OrysaZ2a),Serpin-Z2B (OrysaZ2b),Putative serpin-Z6A (OrysaZ6a),Serpin-Z6B (OrysaZ6b),Putative serpin-Z8 (OrysaZ8),Os11g0230200 protein,Os11g0231800 protein,Os11g0224800 protein,Os11g0239400 protein (Fragment),Os11g0230400 protein Q53MD3,Q53MD1,Q53KS8,Q53KS9,Q53Q31,Q53Q32,Q53P09,Q53Q27,A0A0P0Y0W3,A0A0P0Y0I7,A0A0N7KSP2,A0A0P0Y0A4 SPZ5_ORYSJ,SPZ6C_ORYSJ,SPZ2A_ORYSJ,SPZ2B_ORYSJ,SPZ6A_ORYSJ,SPZ6B_ORYSJ,SPZ8_ORYSJ,Q53Q27_ORYSJ,A0A0P0Y0W3_ORYSJ,A0A0P0Y0I7_ORYSJ,A0A0N7KSP2_ORYSJ,A0A0P0Y0A4_ORYSJ Os11g0232000 LOC_Os11g12520,Os11g0231200 LOC_Os11g12460,Os11g0239000 LOC_Os11g13530,Os11g0239200 LOC_Os11g13540 OsJ_032137,Os11g0230400 LOC_Os11g12410,Os11g0230700 LOC_Os11g12420,Os11g0224800 LOC_Os11g11760,Os11g0230200 LOC_Os11g12390 OsJ_33444 OSNPB_110230200,Os11g0231800 OSNPB_110231800,Os11g0224800 OSNPB_110224800,Os11g0239400 OSNPB_110239400,Os11g0230400 OSNPB_110230400 FUNCTION: Probable serine protease inhibitor. {ECO:0000250}. ENOG411E2B5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RHO Rac-like GTP-binding protein 4 (GTPase protein ROP4) (OsRac4) Q67VP4 RAC4_ORYSJ RAC4 ROP4 Os06g0234200 LOC_Os06g12790 OsJ_20720 OSJNBa0080E19.8-1 OSJNBb0061B07.23-1 FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. ENOG411E2B4 Q67YW5,Q8W4R6 Q67YW5_ARATH,Q8W4R6_ARATH Plant/protein (mRNA, clone: RAFL24-05-D16),AT3g27760/MGF10_16 (Plant/protein) (Uncharacterized protein At3g27770) (mRNA, clone: RAFL21-96-P05) (mRNA, clone: RAFL21-98-D20) (mRNA, clone: RAFL24-09-M16) (mRNA, clone: RAFL24-11-G24) (mRNA, clone: RAFL24-18-P22) (mRNA, clone: RAFL25-26-B19) 31487,36715 Plant/protein (mRNA, clone: RAFL24-05-D16),AT3g27760/MGF10_16 (Plant/protein) (Uncharacterized protein At3g27770) (mRNA, clone: RAFL21-96-P05) (mRNA, clone: RAFL21-98-D20) (mRNA, clone: RAFL24-09-M16) (mRNA, clone: RAFL24-11-G24) (mRNA, clone: RAFL24-18-P22) (mRNA, clone: RAFL25-26-B19) integral component of membrane [GO:0016021] locus:2089174; AT3G27770 NA NA NA NA NA NA NA NA ENOG411E2BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E2BR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytidylyltransferase Phosphopantetheine adenylyltransferase 1 (EC 2.7.7.3) (Dephospho-CoA pyrophosphorylase 1) (Pantetheine-phosphate adenylyltransferase 1) Q6ZLC4 COAD1_ORYSJ Os07g0179400 LOC_Os07g08210 OJ1014_E09.9 FUNCTION: Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Does not accept 4'-phosphopantothenoylcysteine as a substrate (By similarity). {ECO:0000250}. ENOG411E2BQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain OSJNBb0096E05.1 protein (Os04g0288500 protein) Q7X756 Q7X756_ORYSJ Os04g0288500 Os04g0288500 OsJ_14154 OSJNBb0096E05.1 OSNPB_040288500 ENOG411E2BP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 Putative B3 domain-containing protein Os08g0157700 Q7EZD5 Y8577_ORYSJ Os08g0157700 LOC_Os08g06120 OsJ_26107 P0498E12.101 ENOG411E2BW ZHD3 O64722 ZHD3_ARATH Zinc-finger homeodomain protein 3 (AtZHD3) (Homeobox protein 21) (AtHB-21) (Zinc finger homeodomain transcription factor 4) FUNCTION: Putative transcription factor. {ECO:0000250}. 34716 Zinc-finger homeodomain protein 3 (AtZHD3) (Homeobox protein 21) (AtHB-21) (Zinc finger homeodomain transcription factor 4) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; glucosinolate metabolic process [GO:0019760]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. locus:2065304; AT2G02540 ZF-HD protein dimerisation region containing protein expressed Zinc-finger homeodomain protein 4 (OsZHD4) Q53N87 ZHD4_ORYSJ ZHD4 Os11g0243300 LOC_Os11g13930 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411E2BV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain Os02g0650800 protein A0A0P0VMH4 A0A0P0VMH4_ORYSJ Os02g0650800 OSNPB_020650800 ENOG411E2BU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411E2BT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os07g0237133 protein,Os07g0237100 protein (Fragment) B9FWB5,A0A0P0X3W0 B9FWB5_ORYSJ,A0A0P0X3W0_ORYSJ Os07g0237133 OsJ_23643 OSNPB_070237133,Os07g0237100 OSNPB_070237100 ENOG411E2BA LBD41,LBD40 Q9M886,Q9ZW96 LBD41_ARATH,LBD40_ARATH LOB domain-containing protein 41 (ASYMMETRIC LEAVES 2-like protein 38) (AS2-like protein 38),LOB domain-containing protein 40 (ASYMMETRIC LEAVES 2-like protein 37) (AS2-like protein 37) 28417,25700 LOB domain-containing protein 41 (ASYMMETRIC LEAVES 2-like protein 38) (AS2-like protein 38),LOB domain-containing protein 40 (ASYMMETRIC LEAVES 2-like protein 37) (AS2-like protein 37) regulation of transcription, DNA-templated [GO:0006355],response to gibberellin [GO:0009739] TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.,TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. locus:2076829;,locus:2019698; AT3G02550,AT1G67100 lob domain-containing protein Os01g0511000 protein Q0JME5 Q0JME5_ORYSJ Os01g0511000 Os01g0511000 OSNPB_010511000 ENOG411E2BG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XH domain Os01g0126600 protein (Fragment),Os07g0113100 protein (Fragment) Q0JR16,A0A0P0X271 Q0JR16_ORYSJ,A0A0P0X271_ORYSJ Os01g0126600 Os01g0126600 OSNPB_010126600,Os07g0113100 OSNPB_070113100 ENOG411E2BF Q9C6F8 Q9C6F8_ARATH At1g58070 (Uncharacterized protein At1g58070) (Uncharacterized protein T15M6.8) (WEB family protein) 31231 At1g58070 (Uncharacterized protein At1g58070) (Uncharacterized protein T15M6.8) (WEB family protein) cytosol [GO:0005829]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] locus:2196276; AT1G58070 NA Expressed protein (Os11g0195800 protein) (cDNA clone:006-212-F07, full insert sequence) Q53LG8 Q53LG8_ORYSJ Os11g0195800 LOC_Os11g09040 Os11g0195800 OsJ_34156 OSNPB_110195800 ENOG411E2BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os02g0252200 protein (Putative OsNAC7 protein) (cDNA clone:001-123-E07, full insert sequence) (cDNA clone:J033033C18, full insert sequence) Q6K539 Q6K539_ORYSJ Os02g0252200 Os02g0252200 OSJNBa0009N02.14 OSNPB_020252200 ENOG411E2BD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E2BK F4ISG1 F4ISG1_ARATH RING/FYVE/PHD zinc finger superfamily protein 71222 RING/FYVE/PHD zinc finger superfamily protein zinc ion binding [GO:0008270] locus:2047630; AT2G19260 PHD Os04g0425100 protein Q0JD71,A0A0P0WAK4 Q0JD71_ORYSJ,A0A0P0WAK4_ORYSJ Os04g0425100 Os04g0425100 OSNPB_040425100,Os04g0425100 OSNPB_040425100 ENOG411E2BJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase Carboxypeptidase (EC 3.4.16.-),Carboxypeptidase (EC 3.4.16.-) (Fragment) Q5ZA19,A0A0P0V1W8 Q5ZA19_ORYSJ,A0A0P0V1W8_ORYSJ Os01g0332800 Os01g0332800 B1140D12.11 OsJ_01586 OSNPB_010332800,Os01g0332800 OSNPB_010332800 ENOG411E2BN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain OSJNBa0009P12.23 protein (Os04g0593200 protein) (cDNA, clone: J100049K04, full insert sequence) A3AWY9 A3AWY9_ORYSJ Os04g0593200 OsJ_15988 OSJNBa0009P12.23 OSNPB_040593200 ENOG411DQN5 DOT4 Q9SN39 PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 4) (Protein FLAVODENTATA) DISRUPTION PHENOTYPE: Defects in venation pattern in leaves and cotyledons. {ECO:0000269|PubMed:18643975}. dot4-1 mutants have an aberrant midgap leaf and cotyledon venation pattern and their roots are slightly shorter than wild type roots. Short roots; Small rosette; Abnormal leaf morphology-T. Nelson-2008 FUNCTION: Plays a major role in single RNA editing events in chloroplasts. Acts as a site-recognition transacting factor involved in the edition of the unique site (corresponding to cytidine-488) of rpoC1, which is a plastid-encoded subunit of the chloroplast DNA-directed RNA polymerase. May provide the catalytic activity for editing site conversion (PubMed:24194514). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000269|PubMed:24194514}. 97698 Pentatricopeptide repeat-containing protein DOT4, chloroplastic (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 4) (Protein FLAVODENTATA) chloroplast [GO:0009507]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; chloroplast RNA modification [GO:1900865]; cotyledon vascular tissue pattern formation [GO:0010588]; leaf development [GO:0048366]; leaf vascular tissue pattern formation [GO:0010305]; mRNA processing [GO:0006397]; phloem or xylem histogenesis [GO:0010087] TISSUE SPECIFICITY: Weakly expressed in leaves. {ECO:0000269|PubMed:18643975}. locus:2124137; AT4G18750 Pentatricopeptide repeat-containing protein Os01g0355000 protein (Os01g0355100 protein) (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA, clone: J065053H11, full insert sequence),Os09g0251500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) (cDNA clone:001-131-D11, full insert sequence),Os12g0552300 protein,Os01g0205200 protein (Fragment) Q5ZDP1,Q6K297,A0A0P0YB55,A0A0N7KCI8 Q5ZDP1_ORYSJ,Q6K297_ORYSJ,A0A0P0YB55_ORYSJ,A0A0N7KCI8_ORYSJ Os01g0355100 Os01g0355000 OSNPB_010355100 P0458A05.18,Os09g0251500 Os09g0251500 B1080A02.28 OSNPB_090251500 P0574F11.5,Os12g0552300 OSNPB_120552300,Os01g0205200 OSNPB_010205200 ENOG411EA9Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411EA9S YSL5,YSL8,MFC19.12 Q9LUN2,Q6R3K4,Q9FHJ1,A0A1P8AQR0 YSL5_ARATH,YSL8_ARATH,Q9FHJ1_ARATH,A0A1P8AQR0_ARATH Probable metal-nicotianamine transporter YSL5 (Protein YELLOW STRIPE LIKE 5) (AtYSL5),Probable metal-nicotianamine transporter YSL8 (Protein YELLOW STRIPE LIKE 8) (AtYSL8),Gb|AAD49762.1 (Oligopeptide transporter OPT superfamily protein),YELLOW STRIPE like 8 Seedling lethal (inferred from pigment defect)-D. Meinke-2003 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. 78853,80109,23556,61621 Probable metal-nicotianamine transporter YSL5 (Protein YELLOW STRIPE LIKE 5) (AtYSL5),Probable metal-nicotianamine transporter YSL8 (Protein YELLOW STRIPE LIKE 8) (AtYSL8),Gb|AAD49762.1 (Oligopeptide transporter OPT superfamily protein),YELLOW STRIPE like 8 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857],integral component of membrane [GO:0016021]; transmembrane transport [GO:0055085] locus:2090502;,locus:2007715;,locus:2163508; AT3G17650,AT1G48370,AT5G45450 OPT oligopeptide transporter protein NA NA NA NA NA NA NA ENOG411EA99 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA agamous-like MADS-box protein AGL80-like NA NA NA NA NA NA NA ENOG411DQNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transposon protein NA NA NA NA NA NA NA ENOG411EK8I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E88H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411DQNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os01g0821300 protein (Fragment) A0A0P0V9R7 A0A0P0V9R7_ORYSJ Os01g0821300 OSNPB_010821300 ENOG411EK8S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubox NA NA NA NA NA NA NA ENOG411EBNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP Os01g0890600 protein (Fragment),Os01g0890100 protein (Fragment) A0A0P0VBI4,A0A0P0VBG6 A0A0P0VBI4_ORYSJ,A0A0P0VBG6_ORYSJ Os01g0890600 OSNPB_010890600,Os01g0890100 OSNPB_010890100 ENOG411EFSU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box kelch-repeat protein Os06g0300900 protein A0A0P0WVT0 A0A0P0WVT0_ORYSJ Os06g0300900 OSNPB_060300900 ENOG411EFSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase inhibitor I9 NA NA NA NA NA NA NA ENOG411E9Y9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9Y8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9Y5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP P2X receptor NA NA NA NA NA NA NA ENOG411E9Y4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411E9Y7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411E9Y6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR Os05g0326650 protein,Os05g0326651 protein A0A0P0WL07,A0A0P0WKT2 A0A0P0WL07_ORYSJ,A0A0P0WKT2_ORYSJ Os05g0326650 OSNPB_050326650,Os05g0326651 OSNPB_050326651 ENOG411E9Y1 Q9SAA8 Q9SAA8_ARATH BRANCHLESS TRICHOME-like protein (F25C20.16) (Uncharacterized protein At1g11690) 29771 BRANCHLESS TRICHOME-like protein (F25C20.16) (Uncharacterized protein At1g11690) locus:2027402; AT1G11690 NA NA NA NA NA NA NA NA ENOG411E9Y0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E9Y3 Q9ZUF1 FB99_ARATH F-box protein At2g05970 44208 F-box protein At2g05970 locus:2064742; AT2G05970 Protein of unknown function (DUF295) NA NA NA NA NA NA NA ENOG411E9Y2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alginate lyase NA NA NA NA NA NA NA ENOG411E9YY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411E9YX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain OSJNBa0040D17.11 protein (Os04g0194000 protein) (cDNA clone:J033101G08, full insert sequence) Q7XML6 Q7XML6_ORYSJ Os04g0194000 Os04g0194000 OSJNBa0040D17.11 OSNPB_040194000 ENOG411E9YZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1212) NA NA NA NA NA NA NA ENOG411E9YU A0A1P8AZ35,F4IT66 A0A1P8AZ35_ARATH,F4IT66_ARATH tRNA-splicing ligase, putative (DUF239) 37131,46668 tRNA-splicing ligase, putative (DUF239) ligase activity [GO:0016874] locus:2050599; AT2G44250 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411E9YT 4CLL2,4CLL5,OPCL1 Q84P25,Q84P21,A0A1P8AUM2,F4HST9 4CLL2_ARATH,4CLL5_ARATH,A0A1P8AUM2_ARATH,F4HST9_ARATH 4-coumarate--CoA ligase-like 2 (EC 6.2.1.-),4-coumarate--CoA ligase-like 5 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 9) (At4CL9) (Peroxisomal OPC-8:0-CoA ligase 1),OPC-8:0 CoA ligase1 FUNCTION: Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively. ARA:AT1G20480-MONOMER; 6.2.1.B3; 6.2.1.- 61438,59375,50904,51223 4-coumarate--CoA ligase-like 2 (EC 6.2.1.-),4-coumarate--CoA ligase-like 5 (EC 6.2.1.-) (4-coumarate--CoA ligase isoform 9) (At4CL9) (Peroxisomal OPC-8:0-CoA ligase 1),OPC-8:0 CoA ligase1 peroxisome [GO:0005777]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; metabolic process [GO:0008152],peroxisome [GO:0005777]; ATP binding [GO:0005524]; ligase activity [GO:0016874]; jasmonic acid biosynthetic process [GO:0009695]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; metabolic process [GO:0008152] locus:2034423;,locus:2034392; AT1G20480,AT1G20510 4-coumarate--CoA ligase family protein 4-coumaroyl-CoA synthase family protein NA NA NA NA NA NA NA ENOG411E9YW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411E9YV EIF4E2,EIF4E3 Q9C7P2,Q9C7P6 IF4E2_ARATH,IF4E3_ARATH Eukaryotic translation initiation factor 4E-2 (eIF-4E-2) (eIF4E-2) (mRNA cap-binding protein),Eukaryotic translation initiation factor 4E-3 (eIF-4E-3) (eIF4E-3) (mRNA cap-binding protein) FUNCTION: Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures (By similarity). {ECO:0000250}. R-ATH-156827;R-ATH-72662;R-ATH-72702; 27301,27141 Eukaryotic translation initiation factor 4E-2 (eIF-4E-2) (eIF4E-2) (mRNA cap-binding protein),Eukaryotic translation initiation factor 4E-3 (eIF-4E-3) (eIF4E-3) (mRNA cap-binding protein) cytoplasm [GO:0005737]; translation initiation factor activity [GO:0003743]; regulation of translation [GO:0006417] locus:2013748; AT1G29590,AT1G29550 Component of the protein complex eIF4F which is involved in the recognition of the mRNA cap ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Recognizes and binds the 7-methylguanosine- containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures (By similarity) NA NA NA NA NA NA NA ENOG411E9YQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mTERF Os11g0206600 protein (cDNA clone:002-145-G07, full insert sequence) (mTERF family protein, expressed) (mTERF, putative),Os11g0206200 protein (cDNA clone:J023034A08, full insert sequence) (cDNA clone:J023126C15, full insert sequence) (mTERF family protein, expressed) (mTERF, putative),Os11g0246100 protein (mTERF family protein, expressed) (mTERF, putative),Os11g0206101 protein,Os11g0206300 protein (Fragment),Os08g0528700 protein Q53LJ5,Q53LJ0,Q53NA7,B9G9W6,A0A0P0Y0G0,A0A0N7KQ67 Q53LJ5_ORYSJ,Q53LJ0_ORYSJ,Q53NA7_ORYSJ,B9G9W6_ORYSJ,A0A0P0Y0G0_ORYSJ,A0A0N7KQ67_ORYSJ LOC_Os11g10040 Os11g0206600 OSNPB_110206600,LOC_Os11g09990 Os11g0206200 OSNPB_110206200,Os11g0246100 LOC_Os11g14130 Os11g0246100 OSNPB_110246100,Os11g0206101 OsJ_33299 OSNPB_110206101,Os11g0206300 OSNPB_110206300,Os08g0528700 OSNPB_080528700 ENOG411E9YP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF626) NA NA NA NA NA NA NA ENOG411E9YS Q9MAA8,A8MR58,A8MQS7,F4J632,F4J631 Q9MAA8_ARATH,A8MR58_ARATH,A8MQS7_ARATH,F4J632_ARATH,F4J631_ARATH Early endosome antigen-like protein, putative (DUF3444) (T12H1.7 protein),At3g04960 (Trichohyalin, putative (DUF3444)),Trichohyalin, putative (DUF3444) 43077,65073,58858,64355,70540 Early endosome antigen-like protein, putative (DUF3444) (T12H1.7 protein),At3g04960 (Trichohyalin, putative (DUF3444)),Trichohyalin, putative (DUF3444) locus:2096294;,locus:2114901; AT3G05110,AT3G04960 CONTAINS InterPro DOMAIN s Molecular chaperone heat shock protein Hsp40 DnaJ (InterPro IPR015609) NA NA NA NA NA NA NA ENOG411E9YR PP2C74 Q9FG61,A0A1P8BC15,A0A1P8BC27 P2C74_ARATH,A0A1P8BC15_ARATH,A0A1P8BC27_ARATH Probable protein phosphatase 2C 74 (AtPP2C74) (EC 3.1.3.16),Protein phosphatase 2C family protein R-ATH-70895; 3.1.3.16 49314,38584,50871 Probable protein phosphatase 2C 74 (AtPP2C74) (EC 3.1.3.16),Protein phosphatase 2C family protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; phosphoprotein phosphatase activity [GO:0004721]; protein serine/threonine phosphatase activity [GO:0004722]; protein dephosphorylation [GO:0006470],protein serine/threonine phosphatase activity [GO:0004722] locus:2183612; AT5G36250 PP2Cc NA NA NA NA NA NA NA ENOG411E9YM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E9YN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E9YI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of NA NA NA NA NA NA NA ENOG411E9YH NAI1 Q8S3F1 BH020_ARATH Transcription factor NAI1 (Basic helix-loop-helix protein 20) (AtbHLH20) (bHLH 20) (Transcription factor EN 27) (bHLH transcription factor bHLH020) Complete loss of ER body formation-I. Hara-Nishimura-2003 FUNCTION: Transcription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}. 35697 Transcription factor NAI1 (Basic helix-loop-helix protein 20) (AtbHLH20) (bHLH 20) (Transcription factor EN 27) (bHLH transcription factor bHLH020) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; endoplasmic reticulum organization [GO:0007029]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2062235; AT2G22770 Transcription factor NA NA NA NA NA NA NA ENOG411E9YK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MIF4G NA NA NA NA NA NA NA ENOG411E9YJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os12g0248400 protein,Os12g0249900 protein (Protein kinase domain containing protein, expressed) Q2QV00,Q2QUY3 Q2QV00_ORYSJ,Q2QUY3_ORYSJ Os12g0248400 LOC_Os12g14520 OsJ_35716 OSNPB_120248400,LOC_Os12g14699 Os12g0249900 OSNPB_120249900 ENOG411E9YE MCM23.4 Q9FJG4 Q9FJG4_ARATH Disease resistance protein (Disease resistance protein (TIR-NBS-LRR class) family) (Disease resistance protein-like) 88473 Disease resistance protein (Disease resistance protein (TIR-NBS-LRR class) family) (Disease resistance protein-like) ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2161513; AT5G17970 Leucine Rich Repeat NA NA NA NA NA NA NA ENOG411E9YD ARO3 O65640 O65640_ARATH Armadillo repeat only 3 (Uncharacterized protein AT4g36030) (Uncharacterized protein At4g36030/T19K4_160) (Uncharacterized protein T19K4.160) 73066 Armadillo repeat only 3 (Uncharacterized protein AT4g36030) (Uncharacterized protein At4g36030/T19K4_160) (Uncharacterized protein T19K4.160) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2135149; AT4G36030 armadillo repeat only 3 NA NA NA NA NA NA NA ENOG411E9YG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411E9YF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ammonium Transporter Family NA NA NA NA NA NA NA ENOG411E9YA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pyridine nucleotide-disulphide oxidoreductase NA NA NA NA NA NA NA ENOG411E9YC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Endonuclease/Exonuclease/phosphatase family NA NA NA NA NA NA NA ENOG411E9YB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 9 Endoglucanase 7 (EC 3.2.1.4) (Endo-1,4-beta glucanase 7) (OsGLU10),Endoglucanase 16 (EC 3.2.1.4) (Endo-1,4-beta glucanase 16),Endoglucanase (EC 3.2.1.4) (Fragment),Endoglucanase (EC 3.2.1.4) Q6Z5P2,Q654U4,A0A0P0WUW3,A0A0P0VPG6 GUN7_ORYSJ,GUN16_ORYSJ,A0A0P0WUW3_ORYSJ,A0A0P0VPG6_ORYSJ GLU10 Os02g0738600 LOC_Os02g50490 P0684F11.11,Os06g0247900 LOC_Os06g13830 OJ1136_C11.27,Os06g0247900 OSNPB_060247900,Os02g0738600 OSNPB_020738600 ENOG411E98I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411E98D PP2AB1,B ALPHA Q38821,A0A1P8AUA0,F4I9M3 2ABA_ARATH,A0A1P8AUA0_ARATH,F4I9M3_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (AtB alpha) (PP2A, subunit B, alpha isoform),Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B FUNCTION: The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. {ECO:0000250}. R-ATH-69231;R-ATH-69273;R-ATH-975957; 56935,68066,67495 Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (AtB alpha) (PP2A, subunit B, alpha isoform),Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B cytosol [GO:0005829]; protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888]; developmental process [GO:0032502]; mitotic cell cycle [GO:0000278]; peptidyl-serine dephosphorylation [GO:0070262],protein phosphatase type 2A complex [GO:0000159]; protein phosphatase regulator activity [GO:0019888] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:7599311}. locus:2017587; AT1G51690 protein phosphatase 2A 55 kDa regulatory subunit B NA NA NA NA NA NA NA ENOG411DRGH PEX1 Q9FNP1,A0A1P8BDW6,A0A1P8BDY2,A0A1P8BDW7 PEX1_ARATH,A0A1P8BDW6_ARATH,A0A1P8BDY2_ARATH,A0A1P8BDW7_ARATH Peroxisome biogenesis protein 1 (Peroxin-1) (AtPEX1),Peroxisome 1 Embryo defective; Gametophyte defective (inferred)-D. Meinke-2009 FUNCTION: Involved in PTS1- and PTS2-dependent protein import into peroxisomes. May form heteromeric AAA ATPase complexes required for the import of proteins. {ECO:0000269|PubMed:17478547}. 123844,97811,110380,122905 Peroxisome biogenesis protein 1 (Peroxin-1) (AtPEX1),Peroxisome 1 peroxisomal membrane [GO:0005778]; ATP binding [GO:0005524]; ATPase activity, coupled [GO:0042623]; fatty acid beta-oxidation [GO:0006635]; protein import into peroxisome matrix [GO:0016558],peroxisomal membrane [GO:0005778]; ATP binding [GO:0005524]; ATPase activity, coupled [GO:0042623]; protein targeting to peroxisome [GO:0006625] DEVELOPMENTAL STAGE: Highly expressed during the first two days post-germinative growth. Strongly up-regulated in senescence. {ECO:0000269|PubMed:11118212, ECO:0000269|PubMed:15449020}. TISSUE SPECIFICITY: Mainly expressed in meristems and young developing leaves. Expressed in seedlings, roots, leaves, flowers, siliques and stems. Not detected in root tips. {ECO:0000269|PubMed:11118212, ECO:0000269|PubMed:15449020}. locus:2159557; AT5G08470 peroxisome biogenesis protein Os08g0556500 protein (Fragment),Os08g0556550 protein (Fragment) A0A0P0XJ85,A0A0P0XIR9 A0A0P0XJ85_ORYSJ,A0A0P0XIR9_ORYSJ Os08g0556500 OSNPB_080556500,Os08g0556550 OSNPB_080556550 ENOG411DRGN THO5B F4K4J0 THO5B_ARATH THO complex subunit 5B (THO complex subunit 5) (AtTHO5) FUNCTION: Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. {ECO:0000250}. 92577 THO complex subunit 5B (THO complex subunit 5) (AtTHO5) nuclear chromosome [GO:0000228]; THO complex [GO:0000347]; THO complex part of transcription export complex [GO:0000445]; mRNA binding [GO:0003729]; mRNA export from nucleus [GO:0006406]; mRNA processing [GO:0006397]; positive regulation of DNA-templated transcription, elongation [GO:0032786]; RNA splicing [GO:0008380] locus:2160006; AT5G42920 THO complex subunit 5 Os02g0767100 protein (cDNA clone:001-114-C01, full insert sequence) Q6Z308 Q6Z308_ORYSJ Os02g0767100 Os02g0767100 OJ1004_A11.24 OSNPB_020767100 ENOG411DRGM ARAC9 Q9XGU0 RAC9_ARATH Rac-like GTP-binding protein ARAC9 (GTPase protein ROP8) FUNCTION: Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. {ECO:0000250}. R-ATH-194840; 22972 Rac-like GTP-binding protein ARAC9 (GTPase protein ROP8) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; small GTPase mediated signal transduction [GO:0007264] locus:2042326; AT2G44690 RHO NA NA NA NA NA NA NA ENOG411DRGR Q9FYF9 FB76_ARATH F-box protein At1g67340 FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 41012 F-box protein At1g67340 nucleus [GO:0005634]; protein ubiquitination [GO:0016567] locus:2019604; AT1G67340 F-box protein OJ1485_B09.11 protein (Os01g0921800 protein),OSJNBa0044M19.1 protein (OSJNBa0084N21.16 protein) (Os04g0385600 protein),Os01g0301800 protein,Os05g0388151 protein (Fragment) Q8RZI5,Q7XL60,Q5JL26,A0A0P0WM36 Q8RZI5_ORYSJ,Q7XL60_ORYSJ,Q5JL26_ORYSJ,A0A0P0WM36_ORYSJ OJ1485_B09.11 Os01g0921800 OSNPB_010921800,Os04g0385600 OSJNBa0044M19.1 OSJNBa0084N21.16 OSNPB_040385600,P0682B08.32 Os01g0301800 OSNPB_010301800,Os05g0388151 OSNPB_050388151 ENOG411DRGP SMXL3 Q9SVD0 SMXL3_ARATH Protein SMAX1-LIKE 3 (AtSMXL3) FUNCTION: May function in a transcriptional corepressor complex. {ECO:0000250|UniProtKB:Q9FHH2}. 89943 Protein SMAX1-LIKE 3 (AtSMXL3) protein metabolic process [GO:0019538]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and seedlings. {ECO:0000269|PubMed:23893171}. locus:2079904; AT3G52490 Clp amino terminal domain Os04g0416500 protein (Fragment),Os02g0537800 protein Q0JDA8,A0A0P0VK23 Q0JDA8_ORYSJ,A0A0P0VK23_ORYSJ Os04g0416500 Os04g0416500 OSNPB_040416500,Os02g0537800 OSNPB_020537800 ENOG411DRGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os04g0597501 protein,Os04g0597400 protein,Os12g0240800 protein,Os12g0240875 protein A0A0P0WE81,A0A0P0WE69,A0A0N7KTT3,A0A0P0Y8I7 A0A0P0WE81_ORYSJ,A0A0P0WE69_ORYSJ,A0A0N7KTT3_ORYSJ,A0A0P0Y8I7_ORYSJ Os04g0597501 OSNPB_040597501,Os04g0597400 OSNPB_040597400,Os12g0240800 OSNPB_120240800,Os12g0240875 OSNPB_120240875 ENOG411DRGV NEN2,NEN1 Q0V842,Q9FLR0 NEN2_ARATH,NEN1_ARATH Protein NEN2 (NAC45/NAC86-dependent exonuclease-domain protein 2) (EC 3.1.11.-),Protein NEN1 (NAC45/NAC86-dependent exonuclease-domain protein 1) (EC 3.1.11.-) FUNCTION: Probable exonuclease involved in enuclation of sieve elements. {ECO:0000305|PubMed:25081480}. 3.1.11.- 54320,52167 Protein NEN2 (NAC45/NAC86-dependent exonuclease-domain protein 2) (EC 3.1.11.-),Protein NEN1 (NAC45/NAC86-dependent exonuclease-domain protein 1) (EC 3.1.11.-) cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed in the sieve elements and phloem pole pericycle cells. {ECO:0000269|PubMed:25081480}. locus:2163208;,locus:2160359; AT5G61390,AT5G07710 exonuclease Exonuclease family protein, putative, expressed (Os10g0407500 protein) (Putative exonuclease),Os10g0407400 protein,Os10g0426300 protein (Fragment) Q948H5,A0A0P0XTY0,A0A0P0XUQ0 Q948H5_ORYSJ,A0A0P0XTY0_ORYSJ,A0A0P0XUQ0_ORYSJ OSJNBa0060A14.21 Os10g0407500 LOC_Os10g26730 OSNPB_100407500,Os10g0407400 OSNPB_100407400,Os10g0426300 OSNPB_100426300 ENOG411DVT1 LTL1 Q9SVU5,Q8LB81,Q9M8Y5 GDL67_ARATH,GDL79_ARATH,LTL1_ARATH GDSL esterase/lipase At4g28780 (EC 3.1.1.-) (Extracellular lipase At4g28780),GDSL esterase/lipase At5g33370 (EC 3.1.1.-) (Extracellular lipase At5g33370),GDSL esterase/lipase LTL1 (EC 3.1.1.-) (Extracellular lipase LTL1) (Lithium-tolerant lipase 1) (AtLTL1) (Li-tolerant lipase 1) FUNCTION: Involved in the mechanisms of salt tolerance. Mediates resistance to LiCl and NaCl. {ECO:0000269|PubMed:16930315}. ARA:AT4G28780-MONOMER;,ARA:AT5G33370-MONOMER;,ARA:AT3G04290-MONOMER; 3.1.1.- 39897,40359,40149 GDSL esterase/lipase At4g28780 (EC 3.1.1.-) (Extracellular lipase At4g28780),GDSL esterase/lipase At5g33370 (EC 3.1.1.-) (Extracellular lipase At5g33370),GDSL esterase/lipase LTL1 (EC 3.1.1.-) (Extracellular lipase LTL1) (Lithium-tolerant lipase 1) (AtLTL1) (Li-tolerant lipase 1) extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; cuticle development [GO:0042335]; lipid catabolic process [GO:0016042],extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; hyperosmotic salinity response [GO:0042538]; lipid catabolic process [GO:0016042]; response to lithium ion [GO:0010226]; response to salicylic acid [GO:0009751] TISSUE SPECIFICITY: Mostly expressed in flowers, reproductive stems and rosette leaves, and, to a lower extent, in roots. {ECO:0000269|PubMed:16930315}. locus:2117763;,locus:2145969;,locus:2103005; AT4G28780,AT5G33370,AT3G04290 GDSL esterase lipase Os11g0639700 protein,Os08g0565900 protein (Putative GDSL-motif lipase/hydrolase protein),GDSL-like Lipase/Acylhydrolase family protein, expressed (Os10g0463200 protein),Os02g0617400 protein (Putative anther-specific proline-rich protein),OSJNBa0043L24.11 protein (OSJNBb0002J11.20 protein) (Os04g0507700 protein),Os01g0509750 protein,Os01g0509800 protein Q2R0M7,Q84Z95,Q7XDM8,Q6KAI2,Q7X6N0,A0A0P0V3B9,A0A0P0V366 Q2R0M7_ORYSJ,Q84Z95_ORYSJ,Q7XDM8_ORYSJ,Q6KAI2_ORYSJ,Q7X6N0_ORYSJ,A0A0P0V3B9_ORYSJ,A0A0P0V366_ORYSJ Os11g0639700 LOC_Os11g42050 OSNPB_110639700,P0705A05.135 Os08g0565900 OsJ_28320 OSJNBa0044E16.19 OSNPB_080565900,Os10g0463200 LOC_Os10g32580 Os10g0463200 OSNPB_100463200,Os02g0617400 Os02g0617400 OJ1014_H03.11 OsJ_07539 OSNPB_020617400,Os04g0507700 OsJ_15397 OSJNBa0043L24.11 OSJNBb0002J11.20 OSNPB_040507700,Os01g0509750 OSNPB_010509750,Os01g0509800 OSNPB_010509800 ENOG411EKS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF1234 NA NA NA NA NA NA NA ENOG411EKS8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TAP-like protein Hydrolase-like protein (Os07g0622700 protein) (cDNA clone:002-124-B04, full insert sequence) Q7XI46 Q7XI46_ORYSJ P0524E08.104 Os07g0622700 OSNPB_070622700 ENOG411EKS4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKS7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family-like (Os02g0705100 protein) (cDNA clone:001-116-C10, full insert sequence) Q6YVH6 Q6YVH6_ORYSJ Os02g0705100 Os02g0705100 OSNPB_020705100 P0680A05.2 P0724B10.43 ENOG411EKS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKS1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase-like (Os01g0636400 protein) (cDNA, clone: J065021L21, full insert sequence) Q5VNP5 Q5VNP5_ORYSJ Os01g0636400 OSNPB_010636400 P0696E01.7 ENOG411EKS0 Q8VZV6,Q9LFQ7 Q8VZV6_ARATH,Q9LFQ7_ARATH Alpha/beta-Hydrolases superfamily protein (Phospholipase-like protein) (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein (Esterase/lipase/thioesterase family protein) (Lysophospholipase-like protein) 36662,36437 Alpha/beta-Hydrolases superfamily protein (Phospholipase-like protein) (Putative phospholipase),Alpha/beta-Hydrolases superfamily protein (Esterase/lipase/thioesterase family protein) (Lysophospholipase-like protein) endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629],endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; acylglycerol lipase activity [GO:0047372]; lipid metabolic process [GO:0006629] locus:2150245;,locus:2147790; AT5G19290,AT5G14980 Esterase lipase thioesterase family protein NA NA NA NA NA NA NA ENOG411EKS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase-like (Os01g0919700 protein) (cDNA clone:001-021-B12, full insert sequence) Q5JLM9 Q5JLM9_ORYSJ Os01g0919700 Os01g0919700 OSNPB_010919700 P0678F11.26 ENOG411EKS2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POLAc NA NA NA NA NA NA NA ENOG411EKSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POLAc NA NA NA NA NA NA NA ENOG411EKSZ POLIA,POLIB,POLGAMMA2,POLGAMMA1 F4I6M1,Q84ND9,A0A1P8APQ6,F4JEQ3 POLIA_ARATH,POLIB_ARATH,A0A1P8APQ6_ARATH,F4JEQ3_ARATH DNA polymerase I A, chloroplastic/mitochondrial (EC 2.7.7.7) (DNA polymerase PolI-like B) (AtPolI-like A) (Polymerase gamma 2) (POLGAMMA2),DNA polymerase I B, chloroplastic/mitochondrial (EC 2.7.7.7) (DNA polymerase PolI-like B) (AtPolI-like B) (Polymerase gamma 1) (POLGAMMA1),Polymerase gamma 2,Polymerase gamma 1 DISRUPTION PHENOTYPE: Retarded growth and reduced levels of DNA in both mitochondria and plastids. Double homozygous mutants polIa and polIb are sterile. {ECO:0000269|PubMed:23167278}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants have reduced levels of DNA in both mitochondria and plastids. Double homozygous mutants polIa and polIb are sterile. {ECO:0000269|PubMed:21427281}. FUNCTION: In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity (By similarity). Required for DNA replication and accumulation in plastids and mitochondria. May be required for DNA repair in both organelles. {ECO:0000250, ECO:0000269|PubMed:21427281, ECO:0000269|PubMed:23167278}.,FUNCTION: In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity (By similarity). Required for DNA replication and accumulation in plastids and mitochondria. {ECO:0000250, ECO:0000269|PubMed:21427281}. 2.7.7.7 117234,115563,117321,117300 DNA polymerase I A, chloroplastic/mitochondrial (EC 2.7.7.7) (DNA polymerase PolI-like B) (AtPolI-like A) (Polymerase gamma 2) (POLGAMMA2),DNA polymerase I B, chloroplastic/mitochondrial (EC 2.7.7.7) (DNA polymerase PolI-like B) (AtPolI-like B) (Polymerase gamma 1) (POLGAMMA1),Polymerase gamma 2,Polymerase gamma 1 chloroplast [GO:0009507]; mitochondrion [GO:0005739]; 3'-5' exonuclease activity [GO:0008408]; 5'-3' exonuclease activity [GO:0008409]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA repair [GO:0006281]; mitochondrial DNA replication [GO:0006264]; plastid DNA replication [GO:0033259],3'-5' exonuclease activity [GO:0008408]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; DNA-dependent DNA replication [GO:0006261],chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nucleoid [GO:0009295]; 3'-5' exonuclease activity [GO:0008408]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; double-strand break repair [GO:0006302]; mitochondrial DNA replication [GO:0006264]; plastid DNA replication [GO:0033259] TISSUE SPECIFICITY: Expressed in shoot apical meristem. {ECO:0000269|PubMed:15993837}. locus:2036361;,locus:2085730; AT1G50840,AT3G20540 DNA polymerase DNA polymerase I A, chloroplastic (EC 2.7.7.7) (DNA polymerase PolI-like A) (OsPolI-like A) (DNA polymerase gamma 1),DNA polymerase I B, mitochondrial (EC 2.7.7.7) (DNA polymerase PolI-like B) (OsPolI-like B) (DNA polymerase gamma 2),Os08g0175300 protein Q6Z4T5,Q6Z4T3,A0A0P0XCB2 POLIA_ORYSJ,POLIB_ORYSJ,A0A0P0XCB2_ORYSJ Os08g0175300 LOC_Os08g07840 OJ1134_B10.8-1 OJ1134_B10.8-2 OsJ_26226 OSJNBa0054L03.39-1 OSJNBa0054L03.39-2,Os08g0175600 LOC_Os08g07850 OJ1134_B10.10 OSJNBa0054L03.41,Os08g0175300 OSNPB_080175300 FUNCTION: In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity (By similarity). May be required for DNA replication and accumulation in plastids. {ECO:0000250, ECO:0000269|PubMed:11917019}.,FUNCTION: In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. May be required for DNA replication and accumulation in mitochondria (By similarity). {ECO:0000250}. ENOG411EKSU F24G16.11 Q8VZ93 Q8VZ93_ARATH Allyl alcohol dehydrogenase-like protein (Uncharacterized protein At3g59835) 10500 Allyl alcohol dehydrogenase-like protein (Uncharacterized protein At3g59835) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; plastid [GO:0009536] locus:2080412; AT3G59840 NA NA NA NA NA NA NA NA ENOG411EKST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411EKSW GR1 Q9ZRT1 GR1_ARATH Protein gamma response 1 (COM1/SAE2-like protein) (Protein gamma response I) High levels of double-strand breaks.,Hyperaccumulation of AtSPO11-1 in meiocytes.,In the presence of the DNA cross-linking agents mitomycin C in contrast to wild type true leaves do not develop in the mutant while expansion of cotyledons which does not require cell division is unaffected.,Mutant plants develop anthers that do not contain viable pollen and only aberrant embryo sacs.,Plants homozygous for the Atcom1 mutant alleles do not show growth aberrations during vegetative development. The mutants germinate and develop at the same time and rate as wild-type plants. Rosette leaves are normal in size shape and number and bolting is not delayed. Inflorescences look normal but none of the siliques of Atcom1 mutant plants elongate whereas shoots of wild-type plants have long siliques. The short siliques of the mutant plants are completely devoid of seeds.,DNA fragmentation was undetectable in most cells. Sterile due to defects in meiosis-P. Schlogehofer-2007 FUNCTION: Seems to mediate cell cycle arrest before mitosis in response to DNA damage. Is probably also involved in the transition from mitosis to endoreduplication. {ECO:0000269|PubMed:11023598}. 67231 Protein gamma response 1 (COM1/SAE2-like protein) (Protein gamma response I) nucleus [GO:0005634]; endonuclease activity [GO:0004519]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; gamete generation [GO:0007276]; response to ionizing radiation [GO:0010212] TISSUE SPECIFICITY: Basal levels in mitotically dividing cells (meristems), and high levels in endoreduplicating cells (stipules, trichomes) (at protein level). {ECO:0000269|PubMed:11023598}. locus:1005716561; AT3G52115 gamma response NA NA NA NA NA NA NA ENOG411EKSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0500450 protein B9FK97 B9FK97_ORYSJ Os05g0500450 OsJ_19090 OSNPB_050500450 ENOG411EKSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBX domain-containing protein Os09g0525600 protein (cDNA clone:J033126P18, full insert sequence),Os08g0546400 protein (cDNA clone:J023036E15, full insert sequence),Os09g0525600 protein (Fragment) Q651M2,Q6ZFV9,A0A0P0XPC1,A0A0P0XP82 Q651M2_ORYSJ,Q6ZFV9_ORYSJ,A0A0P0XPC1_ORYSJ,A0A0P0XP82_ORYSJ Os09g0525600 Os09g0525600 OJ1439_F07.4-2 OSJNBa0047P18.32-2 OSNPB_090525600,Os08g0546400 Os08g0546400 OJ1323_A06.23 OsJ_28170 OSNPB_080546400,Os09g0525600 OSNPB_090525600 ENOG411EKSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EKSI GSA1,GSA2 P42799,Q42522,A0A1P8BGJ8 GSA1_ARATH,GSA2_ARATH,A0A1P8BGJ8_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic (GSA 1) (EC 5.4.3.8) (Glutamate-1-semialdehyde aminotransferase 1) (GSA-AT 1),Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic (GSA 2) (EC 5.4.3.8) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2),Glutamate-1-semialdehyde-2,1-aminomutase FUNCTION: Transaminase converting glutamate 1-semialdehyde (GSA) to 5-aminolevulinate (ALA). Involved in the biosynthesis of tetrapyrroles. {ECO:0000269|PubMed:7908550}.,FUNCTION: Transaminase converting glutamate 1-semialdehyde (GSA) to 5-aminolevulinate (ALA). Involved in the biosynthesis of tetrapyrroles (By similarity). {ECO:0000250}. PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 2/2.; PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT5G63570-MONOMER;MetaCyc:AT5G63570-MONOMER;,ARA:AT3G48730-MONOMER; 5.4.3.8 50370,50142,43765 Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic (GSA 1) (EC 5.4.3.8) (Glutamate-1-semialdehyde aminotransferase 1) (GSA-AT 1),Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic (GSA 2) (EC 5.4.3.8) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2),Glutamate-1-semialdehyde-2,1-aminomutase apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; glutamate-1-semialdehyde 2,1-aminomutase activity [GO:0042286]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; chlorophyll biosynthetic process [GO:0015995]; protoporphyrinogen IX biosynthetic process [GO:0006782],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; glutamate-1-semialdehyde 2,1-aminomutase activity [GO:0042286]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; chlorophyll biosynthetic process [GO:0015995]; protoporphyrinogen IX biosynthetic process [GO:0006782],glutamate-1-semialdehyde 2,1-aminomutase activity [GO:0042286]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]; tetrapyrrole biosynthetic process [GO:0033014] TISSUE SPECIFICITY: Present in all tissues tested. {ECO:0000269|PubMed:7908550}. locus:2160554;,locus:2114520; AT5G63570,AT3G48730 Glutamate-1-semialdehyde 21-aminomutase Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic (GSA) (EC 5.4.3.8) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT),Os08g0532200 protein Q6YZE2,A0A0P0XIN6 GSA_ORYSJ,A0A0P0XIN6_ORYSJ GSA Os08g0532200 LOC_Os08g41990 OsJ_28060 P0702E04.16,Os08g0532200 OSNPB_080532200 ENOG411EKSH Q058J1 Q058J1_ARATH Alpha/beta-Hydrolases superfamily protein (At4g39955) 37641 Alpha/beta-Hydrolases superfamily protein (At4g39955) plasma membrane [GO:0005886]; hydrolase activity [GO:0016787] locus:505006573; AT4G39955 alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, putative, expressed (Os03g0388800 protein) Q10KC9 Q10KC9_ORYSJ Os03g0388800 LOC_Os03g27110 OSNPB_030388800 ENOG411EKSK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAS NA NA NA NA NA NA NA ENOG411EKSJ BIO3-BIO1 B0F481 BIODA_ARATH Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial (Bifunctional BIO3-BIO1 protein) [Includes: Dethiobiotin synthetase (EC 6.3.3.3) (DTB synthetase) (DTBS) (Protein BIOTIN AUXOTROPH 3); 7,8-diamino-pelargonic acid aminotransferase (DAPA AT) (DAPA aminotransferase) (7,8-diaminononanoate synthase) (DANS) (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase) (EC 2.6.1.62) (Diaminopelargonic acid synthase) (Protein BIOTIN AUXOTROPH 1)] DISRUPTION PHENOTYPE: Arrested embryos at the transition to cotyledon stages of development. {ECO:0000269|PubMed:17993549}. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: Bifunctional enzyme that catalyzes two different reactions involved in the biotin biosynthesis.; FUNCTION: Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring. {ECO:0000250, ECO:0000269|PubMed:16667573, ECO:0000269|PubMed:17993549, ECO:0000269|PubMed:2909401, ECO:0000269|PubMed:8676868}.; FUNCTION: Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. PATHWAY: Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 1/2.; PATHWAY: Cofactor biosynthesis; biotin biosynthesis; 7,8-diaminononanoate from 8-amino-7-oxononanoate (SAM route): step 1/1. MetaCyc:MONOMER-8566; 2.6.1.62;6.3.3.3; 6.3.3.3; 2.6.1.62 91935 Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial (Bifunctional BIO3-BIO1 protein) [Includes: Dethiobiotin synthetase (EC 6.3.3.3) (DTB synthetase) (DTBS) (Protein BIOTIN AUXOTROPH 3); 7,8-diamino-pelargonic acid aminotransferase (DAPA AT) (DAPA aminotransferase) (7,8-diaminononanoate synthase) (DANS) (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase) (EC 2.6.1.62) (Diaminopelargonic acid synthase) (Protein BIOTIN AUXOTROPH 1)] mitochondrion [GO:0005739]; adenosylmethionine-8-amino-7-oxononanoate transaminase activity [GO:0004015]; ATP binding [GO:0005524]; dethiobiotin synthase activity [GO:0004141]; magnesium ion binding [GO:0000287]; pyridoxal phosphate binding [GO:0030170]; biotin biosynthetic process [GO:0009102] locus:2174532; AT5G57590 dethiobiotin synthase activity Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial (Bifunctional BIO3-BIO1 protein) [Includes: Dethiobiotin synthetase (EC 6.3.3.3) (DTB synthetase) (DTBS) (Protein BIOTIN AUXOTROPH 3); 7,8-diamino-pelargonic acid aminotransferase (DAPA AT) (DAPA aminotransferase) (7,8-diaminononanoate synthase) (DANS) (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase) (EC 2.6.1.62) (Diaminopelargonic acid synthase) (Protein BIOTIN AUXOTROPH 1)],Os03g0555000 protein Q6ZKV8,A0A0P0VZY2 BIODA_ORYSJ,A0A0P0VZY2_ORYSJ BIO3-BIO1 BIO1 BIO3 Os08g0245400 LOC_Os08g14770 OJ1033_B09.17 OsJ_26590,Os03g0555000 OSNPB_030555000 FUNCTION: Bifunctional enzyme that catalyzes two different reactions involved in the biotin biosynthesis.; FUNCTION: Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring. {ECO:0000250}.; FUNCTION: Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor (By similarity). {ECO:0000250}. ENOG411EKSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, expressed (Os03g0178500 protein) (cDNA clone:002-145-C05, full insert sequence) Q10QY7 Q10QY7_ORYSJ LOC_Os03g08110 Os03g0178500 OSNPB_030178500 ENOG411EKSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA hydrolase alpha beta fold family Alpha/beta hydrolase-like (Os01g0647700 protein) (cDNA clone:J023114F24, full insert sequence) Q5VQE5 Q5VQE5_ORYSJ Os01g0647700 OJ1316_H05.3 OsJ_31362 OSNPB_010647700 P0038D11.28 ENOG411EKSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EKSA BDG2 Q9FJ24 BDG2_ARATH Probable lysophospholipase BODYGUARD 2 (AtBDG2) (EC 3.1.1.-) FUNCTION: Involved in cuticle development and morphogenesis. {ECO:0000250|UniProtKB:Q8LFX7}. 3.1.1.- 53645 Probable lysophospholipase BODYGUARD 2 (AtBDG2) (EC 3.1.1.-) cell wall [GO:0005618]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; hydrolase activity [GO:0016787]; cell wall organization [GO:0071555] locus:2153010; AT5G41900 hydrolase alpha beta fold family NA NA NA NA NA NA NA ENOG411EKSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TAP-like protein NA NA NA NA NA NA NA ENOG411EKSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411E0PJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Exonuc_X-T NA NA NA NA NA NA NA ENOG411E8V9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8V8 F6I1.15 Q9FE54 Q9FE54_ARATH At1g16880 (F6I1.15 protein) (Transmembrane protein) (Uncharacterized protein At1g16850) 16704 At1g16880 (F6I1.15 protein) (Transmembrane protein) (Uncharacterized protein At1g16850) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; response to salt stress [GO:0009651] locus:2035502; AT1G16850 NA NA NA NA NA NA NA NA ENOG411E8V5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411E8V4 Q84R19 Q84R19_ARATH Basic leucine zipper/W2 domain protein (Uncharacterized protein At1g06010) 8692 Basic leucine zipper/W2 domain protein (Uncharacterized protein At1g06010) integral component of membrane [GO:0016021] locus:2198806; AT1G06010 NA NA NA NA NA NA NA NA ENOG411E8V7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0636800 protein (Fragment) A0A0N7KJS4 A0A0N7KJS4_ORYSJ Os04g0636800 OSNPB_040636800 ENOG411E8V6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAP_fibrillin NA NA NA NA NA NA NA ENOG411E8V1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0193500 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (cDNA clone:002-121-A02, full insert sequence),Os10g0193100 protein Q7G4J0,A0A0P0XSI2 Q7G4J0_ORYSJ,A0A0P0XSI2_ORYSJ Os10g0193500 LOC_Os10g11750 Os10g0193500 OsJ_30960 OSNPB_100193500,Os10g0193100 OSNPB_100193100 ENOG411E8V0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8V3 DVL17 Q6IM84 Q6IM84_ARATH DVL17 (ROTUNDIFOLIA like 6) 7577 DVL17 (ROTUNDIFOLIA like 6) shoot system development [GO:0048367] locus:4010713928; AT4G35783 DVL family NA NA NA NA NA NA NA ENOG411E8V2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0186600 protein A0A0P0Y041 A0A0P0Y041_ORYSJ Os11g0186600 OSNPB_110186600 ENOG411E8VM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II reaction centre W protein (PsbW) NA NA NA NA NA NA NA ENOG411E8VN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8VI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0204800 protein,Os01g0205000 protein,Os01g0204600 protein Q5QNM0,Q9LWN5,Q5QNM2 Q5QNM0_ORYSJ,Q9LWN5_ORYSJ,Q5QNM2_ORYSJ Os01g0204800 OsJ_00802 OSNPB_010204800 P0451C06.18,Os01g0205000 OsJ_00804 OSNPB_010205000 P0451C06.20,Os01g0204600 OsJ_00800 OSNPB_010204600 P0451C06.16 ENOG411E8VH LCR19 P82733 DF183_ARATH Defensin-like protein 183 (Low-molecular-weight cysteine-rich protein 19) (Protein LCR19) 13383 Defensin-like protein 183 (Low-molecular-weight cysteine-rich protein 19) (Protein LCR19) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023378; AT4G30074 NA NA NA NA NA NA NA NA ENOG411E8VK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0125900 protein Q6ZFR5 Q6ZFR5_ORYSJ Os08g0125900 OJ1163_G08.11 OJ1499_A07.33 OsJ_25889 OSNPB_080125900 ENOG411E8VJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1602) Os02g0189700 protein Q0E379 Q0E379_ORYSJ Os02g0189700 Os02g0189700 OSNPB_020189700 ENOG411E8VE Q3EBA9 Q3EBA9_ARATH Transmembrane protein 11526 Transmembrane protein integral component of membrane [GO:0016021] locus:1006230190; AT3G07425 NA NA NA NA NA NA NA NA ENOG411E8VD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8VG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8VF MNC17.14 Q9FIF4 Q9FIF4_ARATH TFIIA-L3 (Transcription factor-like protein) R-ATH-674695;R-ATH-73776;R-ATH-73779;R-ATH-75953;R-ATH-76042; 20883 TFIIA-L3 (Transcription factor-like protein) transcription factor TFIIA complex [GO:0005672]; regulation of nucleic acid-templated transcription [GO:1903506]; transcription from RNA polymerase II promoter [GO:0006366]; transcription initiation from RNA polymerase II promoter [GO:0006367] locus:2168464; AT5G59230 Transcription factor IIA alpha/beta subunit NA NA NA NA NA NA NA ENOG411E8VA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8VC A8MRP4,F4IDU9,F4IDV2,F4IDV3,A8MSF3 THNL2_ARATH,THNL1_ARATH,F4IDV2_ARATH,F4IDV3_ARATH,A8MSF3_ARATH Thionin-like protein 2,Thionin-like protein 1,Thionin-like protein FUNCTION: May be involved in plant defense. {ECO:0000250}. 12554,15427,11530,5738,9524 Thionin-like protein 2,Thionin-like protein 1,Thionin-like protein extracellular region [GO:0005576]; defense response [GO:0006952] locus:4010713437;,locus:2195088;,locus:4010713441;,locus:4010713438; AT1G12663,AT1G12660,AT1G12672,AT1G12665 to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members At1g66100 At5g36910 At1g72260 At2g15010 At1g12663 At1g12660 NA NA NA NA NA NA NA ENOG411E8VB Q3EBZ0 Q3EBZ0_ARATH F-box/LRR protein 31510 F-box/LRR protein locus:504956009; AT2G17305 Has 41 Blast hits to 26 proteins in 2 species Archae - 0 NA NA NA NA NA NA NA ENOG411E8VY CEP3 O80460 PCEP3_ARATH Precursor of CEP3 (PCEP3) [Cleaved into: C-terminally encoded peptide 3 (CEP3)] DISRUPTION PHENOTYPE: Larger root systems when grown under nitrogen-limiting, acidic, osmotic stress (e.g. mannitol) and high salt conditions, as well as in the presence of sucrose and under decreased or increased light irradiance. Reduced the lateral root density at low temperature (16 degrees Celsius). Increased root and shoot growth when grown hydroponically. {ECO:0000269|PubMed:24179096}. FUNCTION: Extracellular signaling peptide that represses primary root growth rate and significantly inhibits lateral root formation. Promotes shoot growth. Modulates leaf morphology (PubMed:24179096). Regulates systemic nitrogen (N)-demand signaling. Mediates systemic up-regulation of genes involved in N uptake and assimilation pathways (PubMed:25324386). {ECO:0000269|PubMed:24179096, ECO:0000269|PubMed:25324386}. 8693 Precursor of CEP3 (PCEP3) [Cleaved into: C-terminally encoded peptide 3 (CEP3)] apoplast [GO:0048046]; hormone activity [GO:0005179]; cellular response to nitrogen starvation [GO:0006995]; nitrate import [GO:1902025]; regulation of lateral root development [GO:2000023]; regulation of leaf morphogenesis [GO:1901371]; regulation of root development [GO:2000280]; regulation of shoot system development [GO:0048831]; response to auxin [GO:0009733]; response to carbon dioxide [GO:0010037]; response to light intensity [GO:0009642]; response to nitrate starvation [GO:0090548]; response to nitrogen compound [GO:1901698]; response to osmotic stress [GO:0006970]; response to potassium ion [GO:0035864]; response to salt stress [GO:0009651]; response to sucrose [GO:0009744]; response to temperature stimulus [GO:0009266]; root development [GO:0048364] TISSUE SPECIFICITY: Mostly expressed in roots (PubMed:18315543). Present in lateral roots (especially in vasculature), root-hypocotyl junction and cotyledons (PubMed:24179095). {ECO:0000269|PubMed:18315543, ECO:0000269|PubMed:24179095}. locus:2046798; AT2G23440 NA NA NA NA NA NA NA NA ENOG411E8VX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA domain NA NA NA NA NA NA NA ENOG411E8VZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0588700 protein (cDNA clone:J023121G22, full insert sequence),Os04g0472366 protein Q6YY45,A0A0P0WBG7 Q6YY45_ORYSJ,A0A0P0WBG7_ORYSJ Os02g0588700 OsJ_07318 OSJNBb0046O12.23 OSNPB_020588700,Os04g0472366 OSNPB_040472366 ENOG411E8VU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0954100 protein (cDNA clone:001-105-H04, full insert sequence) Q5JJT6 Q5JJT6_ORYSJ Os01g0954100 Os01g0954100 B1139B11.1 OsJ_04796 OSNPB_010954100 P0431G06.31 ENOG411E8VW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0213500 protein) Q10Q14 Q10Q14_ORYSJ Os03g0213500 LOC_Os03g11480 Os03g0213500 OsJ_09900 OSNPB_030213500 ENOG411E8VV LCR8,LCR55,LCR56,LCR20,LCR53,LCR52,LCR6 P82723,P82769,P82770,P82734,P82767,P82766,P82721 DF128_ARATH,DF121_ARATH,DF120_ARATH,DF127_ARATH,DF119_ARATH,DF118_ARATH,DF126_ARATH Putative defensin-like protein 128 (Putative low-molecular-weight cysteine-rich protein 8) (Protein LCR8),Putative defensin-like protein 121 (Putative low-molecular-weight cysteine-rich protein 55) (Protein LCR55),Putative defensin-like protein 120 (Putative low-molecular-weight cysteine-rich protein 56) (Protein LCR56),Defensin-like protein 127 (Low-molecular-weight cysteine-rich protein 20) (Protein LCR20),Putative defensin-like protein 119 (Putative low-molecular-weight cysteine-rich protein 53) (Protein LCR53),Putative defensin-like protein 118 (Putative low-molecular-weight cysteine-rich protein 52) (Protein LCR52),Putative defensin-like protein 126 (Putative low-molecular-weight cysteine-rich protein 6) (Protein LCR6) 8370,8519,8416,8311,8473,8682,8314 Putative defensin-like protein 128 (Putative low-molecular-weight cysteine-rich protein 8) (Protein LCR8),Putative defensin-like protein 121 (Putative low-molecular-weight cysteine-rich protein 55) (Protein LCR55),Putative defensin-like protein 120 (Putative low-molecular-weight cysteine-rich protein 56) (Protein LCR56),Defensin-like protein 127 (Low-molecular-weight cysteine-rich protein 20) (Protein LCR20),Putative defensin-like protein 119 (Putative low-molecular-weight cysteine-rich protein 53) (Protein LCR53),Putative defensin-like protein 118 (Putative low-molecular-weight cysteine-rich protein 52) (Protein LCR52),Putative defensin-like protein 126 (Putative low-molecular-weight cysteine-rich protein 6) (Protein LCR6) extracellular region [GO:0005576]; defense response to fungus [GO:0050832]; killing of cells of other organism [GO:0031640] locus:1009023260;,locus:1009023240;,locus:1009023265;,locus:1009023496;,locus:1009023306;,locus:1009023239;,locus:1009023446; AT3G61172,AT3G20997,AT3G20993,AT5G47075,AT3G61177,AT3G61175,AT5G47077 Low-molecular-weight cysteine-rich 8 NA NA NA NA NA NA NA ENOG411E8VQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E8VP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E8VS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0507700 protein) Q8LN95 Q8LN95_ORYSJ OSJNBb0015K05.12 Os10g0507700 LOC_Os10g36360 OSNPB_100507700 ENOG411E8VR Q9M0H9 Q9M0H9_ARATH At4g28290 (Uncharacterized protein AT4g28290) 8474 At4g28290 (Uncharacterized protein AT4g28290) locus:2123683; AT4G28290 NA NA NA NA NA NA NA NA ENOG411E3DA AtMYB79,MYB305 Q9T0G9,Q9LK14 Q9T0G9_ARATH,Q9LK14_ARATH Myb domain protein 79 (Myb-like protein) (Putative myb protein),MYB-like DNA-binding domain protein (Myb domain protein 305) 30141,30787 Myb domain protein 79 (Myb-like protein) (Putative myb protein),MYB-like DNA-binding domain protein (Myb domain protein 305) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] locus:2140847;,locus:2087183; AT4G13480,AT3G24310 Transcription factor Os02g0618400 protein (Putative MYB transcription factor) (cDNA clone:J013104N22, full insert sequence) Q6K949 Q6K949_ORYSJ Os02g0618400 Os02g0618400 OJ1014_H03.26 OJ1212_C01.12 OsJ_07548 OSNPB_020618400 ENOG411E3DB CML1 Q9ZQE6 CML1_ARATH Calmodulin-like protein 1 FUNCTION: Potential calcium sensor. {ECO:0000250}. R-ATH-6798695; 21220 Calmodulin-like protein 1 mitochondrion [GO:0005739]; calcium ion binding [GO:0005509] locus:2053648; AT2G15680 calmodulin-like protein Calmodulin-like protein (Os09g0458700 protein) Q67TZ4 Q67TZ4_ORYSJ Os09g0458700 Os09g0458700 B1045B05.22 OsJ_29637 OSNPB_090458700 ENOG411E3DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family NA NA NA NA NA NA NA ENOG411E3DF Q9LM21,A2RVU4 Q9LM21_ARATH,A2RVU4_ARATH F16L1.2 protein (Uncharacterized protein At1g22250/F16L1_1),At4g08910 (Homeobox protein) 22771,24351 F16L1.2 protein (Uncharacterized protein At1g22250/F16L1_1),At4g08910 (Homeobox protein) DNA binding [GO:0003677] locus:2015026;,locus:2138723; AT1G22250,AT4G08910 NA NA NA NA NA NA NA NA ENOG411E3DH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os01g0245532 protein,Os01g0245700 protein,Os01g0245499 protein,Os01g0244150 protein (Fragment),Os01g0244400 protein (Fragment),Os01g0245000 protein,Os01g0245901 protein Q5NA90,A0A0P0V0Y2,A0A0P0V0A5,A0A0P0V0X5,A0A0N7KCN3,A0A0P0V0E6,A0A0P0V099 Q5NA90_ORYSJ,A0A0P0V0Y2_ORYSJ,A0A0P0V0A5_ORYSJ,A0A0P0V0X5_ORYSJ,A0A0N7KCN3_ORYSJ,A0A0P0V0E6_ORYSJ,A0A0P0V099_ORYSJ Os01g0245532 B1008C01.38 OsJ_01083 OSJNBa0004G10.7 OSNPB_010245532,Os01g0245700 OSNPB_010245700,Os01g0245499 OSNPB_010245499,Os01g0244150 OSNPB_010244150,Os01g0244400 OSNPB_010244400,Os01g0245000 OSNPB_010245000,Os01g0245901 OSNPB_010245901 ENOG411E3DI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0520600 protein Q6F2Z5 Q6F2Z5_ORYSJ Os05g0520600 Os05g0520600 OSNPB_050520600 P0483D07.9 ENOG411E3DK F4HPT1 F4HPT1_ARATH Histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein 43034 Histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein DNA binding [GO:0003677]; methyltransferase activity [GO:0008168] locus:2009615; AT1G53250 NA NA NA NA NA NA NA NA ENOG411E3DR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transcription factor Y subunit Nuclear transcription factor Y subunit C-6 (OsNF-YC6) (Transcriptional activator HAP5D) (OsHAP5D),Os09g0480700 protein (Fragment) Q9XE33,Q0J0W2 NFYC6_ORYSJ,Q0J0W2_ORYSJ NFYC6 HAP5D Os08g0496500 LOC_Os08g38780 B1142B04.32 P0026F07.3,Os09g0480700 OSNPB_090480700 FUNCTION: Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. ENOG411E3DU Q8L7K1,Q0WTS1 Q8L7K1_ARATH,Q0WTS1_ARATH AT4G32605 protein (Mitochondrial glycoprotein family protein) (Uncharacterized protein At4g32610),Copper ion binding protein (Uncharacterized protein At4g32615) 25171,34779 AT4G32605 protein (Mitochondrial glycoprotein family protein) (Uncharacterized protein At4g32610),Copper ion binding protein (Uncharacterized protein At4g32615) mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739],copper ion binding [GO:0005507] locus:4010713924;,locus:2125672; AT4G32605,AT4G32610 mitochondrial glycoprotein Mitochondrial glycoprotein family protein-like (Os01g0771100 protein) (cDNA clone:002-104-C12, full insert sequence) Q94ED9 Q94ED9_ORYSJ Os01g0771100 OsJ_03612 OSNPB_010771100 P0665A11.28 ENOG411E3DX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 4B3 (OsCASPL4B3) B9F6Z0 CSPLH_ORYSJ Os03g0817100 LOC_Os03g60250 OsJ_13110 OSJNBa0094J08.19 ENOG411E3DY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os03g0336900 protein,Os01g0511400 protein (Fragment) Q10LS2,A0A0P0V3A3 Q10LS2_ORYSJ,A0A0P0V3A3_ORYSJ LOC_Os03g21870 Os03g0336900 OSNPB_030336900,Os01g0511400 OSNPB_010511400 ENOG411E3DZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Werner Syndrome-like exonuclease-like Os01g0660800 protein Q5SMR6 Q5SMR6_ORYSJ Os01g0660800 Os01g0660800 OSNPB_010660800 P0445H04.31 P0671D01.6 ENOG411E3D3 COP10,FUS9 Q9LJD7,B9DGC9 COP10_ARATH,B9DGC9_ARATH Constitutive photomorphogenesis protein 10,AT3G13550 protein (Ubiquitin-conjugating enzyme family protein) Red hypocotyl and cotyledons; Small rosette; Complete loss of petiole elongation; Red lower leaf surfaces due to anthocyanin accumulation; Green roots that become thick and purple over time; Low penetrance of sterile flowers without bolting; Abnormal trichome branching; Altered growth in dark-X. Deng-2002 FUNCTION: Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes (E2s). Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5, HYH and LAF1. Although strongly related to ubiquitin-conjugating enzyme, it has no catalytic activity by itself due to the absence of the conserved Cys active site at position 120. It can however enhance the activity of E2 conjugating enzymes. {ECO:0000269|PubMed:11877375, ECO:0000269|PubMed:15342494}. R-ATH-174184;R-ATH-8866652; 20130,18607 Constitutive photomorphogenesis protein 10,AT3G13550 protein (Ubiquitin-conjugating enzyme family protein) nucleus [GO:0005634]; ubiquitin-protein transferase activity [GO:0004842]; red, far-red light phototransduction [GO:0009585]; regulation of photomorphogenesis [GO:0010099] TISSUE SPECIFICITY: Expressed in flower, leaf, stem and seedling. Expressed at lower level in root. {ECO:0000269|PubMed:11877375}. locus:2092830; AT3G13550 Ubiquitin-conjugating enzyme Os07g0577400 protein (cDNA clone:002-175-F03, full insert sequence) Q0D571 Q0D571_ORYSJ Os07g0577400 Os07g0577400 OSNPB_070577400 ENOG411E3D4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3D7 Q9SK63,F4IUI1 Q9SK63_ARATH,F4IUI1_ARATH Cytochrome oxidase complex assembly protein (Expressed protein) (Uncharacterized protein At2g20390),Cytochrome oxidase complex assembly protein 19821,17518 Cytochrome oxidase complex assembly protein (Expressed protein) (Uncharacterized protein At2g20390),Cytochrome oxidase complex assembly protein locus:2038972; AT2G20390 NA Os02g0754800 protein,Os04g0129600 protein (Fragment) Q0DXG6,Q0JF81 Q0DXG6_ORYSJ,Q0JF81_ORYSJ Os02g0754800 Os02g0754800 OSNPB_020754800,Os04g0129600 Os04g0129600 OSNPB_040129600 ENOG411E3D8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger A20 and AN1 domain-containing stress-associated protein NA NA NA NA NA NA NA ENOG411E3D9 CML20,CML19,CEN2 O82659,O23184,B6EUB9 CML20_ARATH,CML19_ARATH,B6EUB9_ARATH Probable calcium-binding protein CML20 (Calmodulin-like protein 20) (Centrin 1) (AtCEN1),Calcium-binding protein CML19 (Calmodulin-like protein 19) (Centrin 2) (AtCEN2),Centrin 2 FUNCTION: Potential calcium sensor. {ECO:0000250|UniProtKB:O23184}.,FUNCTION: Potential calcium sensor that binds calcium in vitro (PubMed:14688294). Modulates homologous recombination and nucleotide excision repair (NER) (PubMed:15155891). Involved in the early response to UV irradiation (PubMed:16786311). {ECO:0000269|PubMed:14688294, ECO:0000269|PubMed:15155891, ECO:0000269|PubMed:16786311}. R-ATH-5696394;R-ATH-5696395; 19409,19156,19636 Probable calcium-binding protein CML20 (Calmodulin-like protein 20) (Centrin 1) (AtCEN1),Calcium-binding protein CML19 (Calmodulin-like protein 19) (Centrin 2) (AtCEN2),Centrin 2 plasma membrane [GO:0005886]; calcium ion binding [GO:0005509],cytoplasm [GO:0005737]; nucleus [GO:0005634]; calcium ion binding [GO:0005509]; DNA repair [GO:0006281],cytoplasm [GO:0005737]; calcium ion binding [GO:0005509]; DNA repair [GO:0006281] TISSUE SPECIFICITY: Expressed in leaves, roots, and at lower level in stems. Barely detectable in flower buds and flowers. {ECO:0000269|PubMed:15155891}. locus:2074780;,locus:2115030; AT3G50360,AT4G37010 calcium-binding protein Probable calcium-binding protein CML13 (Calmodulin-like protein 13),Os07g0618800 protein (Fragment) Q7F0J0,A0A0N7KNV5 CML13_ORYSJ,A0A0N7KNV5_ORYSJ CML13 Os07g0618800 LOC_Os07g42660 P0552F09.133 P0560B08.106,Os07g0618800 OSNPB_070618800 FUNCTION: Potential calcium sensor. {ECO:0000250}. ENOG411DZVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA peptide transporter At1g52190-like NA NA NA NA NA NA NA ENOG411DZVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 10 Glycosyl hydrolase family 10 protein, expressed (Os03g0201800 protein) (cDNA clone:001-127-C10, full insert sequence),Glycosyl hydrolase family 10 protein, expressed (Os03g0201800 protein) Q10QC3,Q10QC1 Q10QC3_ORYSJ,Q10QC1_ORYSJ LOC_Os03g10469 Os03g0201800 OSNPB_030201800,Os03g0201800 LOC_Os03g10469 OSNPB_030201800 ENOG411DZVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain NA NA NA NA NA NA NA ENOG411DZVJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease Os06g0268700 protein (Putative nucellin-like aspartic protease) (cDNA clone:J023010D09, full insert sequence) Q5Z6M6 Q5Z6M6_ORYSJ Os06g0268700 Os06g0268700 OsJ_20919 OSJNBa0084K06.4 OSNPB_060268700 P0528B02.44 ENOG411DZVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Myb-like DNA-binding domain containing protein (Os03g0142600 protein) Q10RX9 Q10RX9_ORYSJ Os03g0142600 LOC_Os03g04900 Os03g0142600 OsJ_09361 OSNPB_030142600 ENOG411DZVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0569000 protein (Fragment) A0A0P0VZH3 A0A0P0VZH3_ORYSJ Os03g0569000 OSNPB_030569000 ENOG411DZVU PCMP-H87 Q9LIQ7 PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial 71932 Pentatricopeptide repeat-containing protein At3g24000, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]; RNA modification [GO:0009451] AT3G24000 Pentatricopeptide repeat-containing protein Os10g0444500 protein B9G5Y9 B9G5Y9_ORYSJ Os10g0444500 OsJ_31684 OSNPB_100444500 ENOG411DZVQ ICMTA,ICMTB,STE14A Q9FMW9,Q93W54,A0A1P8BBN6 ICMTA_ARATH,ICMTB_ARATH,A0A1P8BBN6_ARATH Protein-S-isoprenylcysteine O-methyltransferase A (AtICMTA) (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase A) (Prenylated protein carboxyl methyltransferase A) (Prenylcysteine carboxyl methyltransferase A) (AtPCM),Protein-S-isoprenylcysteine O-methyltransferase B (AtICMTB) (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase B) (Prenylated protein carboxyl methyltransferase B) (Prenylcysteine carboxyl methyltransferase B),Protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100) DISRUPTION PHENOTYPE: No visible phenotype; due to redundancy with ICMTB. Icmta and icmtb double mutants have altered phyllotaxis, fasciated stems and development of axillary flowers. {ECO:0000269|PubMed:18641086}.,DISRUPTION PHENOTYPE: Plants lacking ICMTA and ICMTB have altered phyllotaxis, fasciated stems and development of axillary flowers. {ECO:0000269|PubMed:18641086}. Homozygous AticmtA mutants do not have any visible phenotypic defects and do not exhibit ABA hypersensitivity. FUNCTION: Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues, resulting in the modulation of the function of prenylated proteins. Involved in negative regulation of abscisic acid signaling. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins. {ECO:0000269|PubMed:11135111, ECO:0000269|PubMed:11352465, ECO:0000269|PubMed:12472689, ECO:0000269|PubMed:18957507}.,FUNCTION: Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues, resulting in the modulation of the function of prenylated proteins. Involved in negative regulation of abscisic acid signaling. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins. {ECO:0000269|PubMed:12472689, ECO:0000269|PubMed:18957507}. MISCELLANEOUS: ICMTA is less widely expressed and has a lower catalytic activity than ICMTB.,MISCELLANEOUS: ICMTB is more widely expressed and has a higher catalytic activity than ICMTA. ARA:AT5G23320-MONOMER;MetaCyc:AT5G23320-MONOMER;,ARA:AT5G08335-MONOMER;MetaCyc:AT5G08335-MONOMER; R-ATH-163841; 2.1.1.100; 2.1.1.100 22525,22766,25439 Protein-S-isoprenylcysteine O-methyltransferase A (AtICMTA) (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase A) (Prenylated protein carboxyl methyltransferase A) (Prenylcysteine carboxyl methyltransferase A) (AtPCM),Protein-S-isoprenylcysteine O-methyltransferase B (AtICMTB) (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase B) (Prenylated protein carboxyl methyltransferase B) (Prenylcysteine carboxyl methyltransferase B),Protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100) endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; carboxyl-O-methyltransferase activity [GO:0010340]; protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [GO:0004671]; C-terminal protein methylation [GO:0006481]; flower development [GO:0009908]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; shoot system development [GO:0048367],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [GO:0004671]; flower development [GO:0009908]; negative regulation of abscisic acid-activated signaling pathway [GO:0009788]; shoot system development [GO:0048367],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [GO:0004671] TISSUE SPECIFICITY: Expressed primarily in flowers, stems, leaves and roots. Almost not expressed in siliques. Detected in root tips and vascular tissues of roots, cotyledons, petiols, hypocotyls, filaments, pollen grains and the distal and proximal portions of the gynoecium. {ECO:0000269|PubMed:11352465, ECO:0000269|PubMed:12472689}.,TISSUE SPECIFICITY: Expressed in flowers, stems, leaves, roots and siliques. Detected in apices and vascular tissues of leaves and roots, in the stigma and in the filaments and anthers of stamen. Not found in petioles or hypocotyls. {ECO:0000269|PubMed:12472689}. locus:2166963;,locus:505006585; AT5G23320,AT5G08335 protein-S-isoprenylcysteine O-methyltransferase Probable protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) (Prenylated protein carboxyl methyltransferase) (Prenylcysteine carboxyl methyltransferase),Protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100),Os04g0602900 protein Q7XSR9,A0A0P0WEJ1,A0A0P0WEE9 ICMT_ORYSJ,A0A0P0WEJ1_ORYSJ,A0A0P0WEE9_ORYSJ ICMT Os04g0602900 LOC_Os04g51380 OsJ_015369 OSJNBa0041A02.18,Os04g0602900 OSNPB_040602900 FUNCTION: Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins (By similarity). {ECO:0000250}. ENOG411DZVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os01g0815900 protein A0A0P0V9J9 A0A0P0V9J9_ORYSJ Os01g0815900 OSNPB_010815900 ENOG411DZVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: membrane-associated kinase regulator Os05g0462200 protein Q6L4Z5 Q6L4Z5_ORYSJ Os05g0462200 OJ1281_H05.19 OJ1525_A02.6 OSNPB_050462200 ENOG411DZV4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Calcium-dependent protein kinase Calcium-dependent protein kinase 21 (OsCDPK21) (OsCPK21) (EC 2.7.11.1) Q6ZIU9 CDPKL_ORYSJ CPK21 Os08g0540400 LOC_Os08g42750 OJ1211_G06.4 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Functions in signal transduction pathways that positively regulate responses to abscisic acid (ABA) and salt stress (PubMed:21136139). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:21136139}. MISCELLANEOUS: Plants over-expressing CPK21 display enhanced tolerance to salt stress. {ECO:0000269|PubMed:21136139}. ENOG411DZV1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA disease resistance response protein 206-like Dirigent protein,Dirigent protein (Fragment) Q8H5S2,Q8GVG8,Q0D465,A0A0P0X9I7 Q8H5S2_ORYSJ,Q8GVG8_ORYSJ,Q0D465_ORYSJ,A0A0P0X9I7_ORYSJ OJ1136_D11.118 Os07g0636800 OSNPB_070636800,OJ1340_C08.109 Os07g0638500 OSNPB_070638500,Os07g0643800 Os07g0643800 OSNPB_070643800,Os07g0637700 OSNPB_070637700 FUNCTION: Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism. {ECO:0000256|RuleBase:RU363099}. ENOG411EAUQ PBP2,PBP1 O04313,O04314 JAL31_ARATH,JAL30_ARATH PYK10-binding protein 2 (Jacalin-related lectin 31) (Jasmonate inducible protein isolog),PYK10-binding protein 1 (Jacalin-related lectin 30) (Jasmonic acid-induced protein) DISRUPTION PHENOTYPE: Smaller PYK10 complexes. {ECO:0000269|PubMed:18467340}.,DISRUPTION PHENOTYPE: Reduced tissue damage-mediated BGLU23/PYK10 activation. Larger PYK10 complexes. {ECO:0000269|PubMed:15919674}. FUNCTION: Polymerizer-type lectin that may facilitate the correct polymerization of BGLU23/PYK10 upon tissue damage. Activates BGLU21, BGLU22 and BGLU23. {ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:19965874}.,FUNCTION: Inhibitor-type lectin that may regulate the correct polymerization of BGLU23/PYK10 upon tissue damage. Activates BGLU21, BGLU22 and BGLU23. {ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:19965874}. 32233,32158 PYK10-binding protein 2 (Jacalin-related lectin 31) (Jasmonate inducible protein isolog),PYK10-binding protein 1 (Jacalin-related lectin 30) (Jasmonic acid-induced protein) carbohydrate binding [GO:0030246]; copper ion binding [GO:0005507],cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; carbohydrate binding [GO:0030246]; copper ion binding [GO:0005507]; enzyme regulator activity [GO:0030234]; protein folding [GO:0006457]; regulation of hydrolase activity [GO:0051336] TISSUE SPECIFICITY: Expressed exclusively in roots. {ECO:0000269|PubMed:19965874}. locus:2088354;,locus:2088344; AT3G16430,AT3G16420 Jacalin NA NA NA NA NA NA NA ENOG411EAUP ASK2 O23145,A0A1I9LQI6,F4JE58,A0A1I9LQI4,A0A1I9LQI5,A0A1I9LQI7 KSG2_ARATH,A0A1I9LQI6_ARATH,F4JE58_ARATH,A0A1I9LQI4_ARATH,A0A1I9LQI5_ARATH,A0A1I9LQI7_ARATH Shaggy-related protein kinase beta (EC 2.7.11.1) (ASK-beta),Protein kinase superfamily protein FUNCTION: May mediate extracellular signals to regulate transcription in differentiating cells. {ECO:0000250}. R-ATH-3371453; 2.7.11.26; 2.7.11.1 49313,44109,49998,40412,48141,41097 Shaggy-related protein kinase beta (EC 2.7.11.1) (ASK-beta),Protein kinase superfamily protein ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],cytosol [GO:0005829]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777] locus:2098896; AT3G61160 S_TKc NA NA NA NA NA NA NA ENOG411EAUS XRN2 Q9FQ02,F4K1L3 XRN2_ARATH,F4K1L3_ARATH 5'-3' exoribonuclease 2 (AtXRN2) (EC 3.1.13.-) (Protein EXORIBONUCLEASE 2),Exoribonuclease 2 FUNCTION: Possesses 5'->3' exoribonuclease activity (PubMed:11106401). Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades miRNA-derived loops, excised during miRNA maturation in the nucleus (PubMed:17993620). Involved in pre-rRNA processing. Involved in the primary exonucleolytic shortening of the 5' external transcribed spacer (5'ETS), required for endonucleolytic processing at site P by the U3 snoRNP complex. Involved with XRN3 in the 5'-end processing of 5.8S and 25S rRNAs. Contributes with XRN3 to polyadenylation-dependent nuclear RNA surveillance. Involved in the degradation of aberrant polyadenylated pre-rRNA through 5'-end processing (PubMed:20338880). {ECO:0000269|PubMed:11106401, ECO:0000269|PubMed:17993620, ECO:0000269|PubMed:20338880}.,FUNCTION: Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. {ECO:0000256|PIRNR:PIRNR037239}. R-ATH-6791226; 3.1.13.- 116385,117686 5'-3' exoribonuclease 2 (AtXRN2) (EC 3.1.13.-) (Protein EXORIBONUCLEASE 2),Exoribonuclease 2 nucleus [GO:0005634]; 5'-3' exoribonuclease activity [GO:0004534]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; miRNA catabolic process [GO:0010587]; mRNA processing [GO:0006397]; negative regulation of posttranscriptional gene silencing [GO:0060149]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; rRNA 5'-end processing [GO:0000967],nucleus [GO:0005634]; 5'-3' exoribonuclease activity [GO:0004534]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; miRNA catabolic process [GO:0010587] TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:11106401}. locus:2152676; AT5G42540 XRN 5'-3' exonuclease N-terminus NA NA NA NA NA NA NA ENOG411EAUU CP29A,CP29B,CP29 Q43349,Q9ZUU4,F4JAF3 CP29A_ARATH,CP29B_ARATH,F4JAF3_ARATH 29 kDa ribonucleoprotein, chloroplastic (RNA-binding protein CP29A) (RNA-binding protein cp29),RNA-binding protein CP29B, chloroplastic (Ribonucleoprotein At2g37220),Chloroplast RNA-binding protein 29 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit increased sensitivity to cold stress. {ECO:0000269|PubMed:23110894}. FUNCTION: Stabilizes specific chloroplast mRNAs. Required for normal chloroplast development under cold stress conditions by stabilizing transcripts of numerous mRNAs under these conditions. {ECO:0000269|PubMed:23110894}.,FUNCTION: Could be involved in splicing and/or processing of chloroplast RNA's. {ECO:0000305}. 36007,30718,38403 29 kDa ribonucleoprotein, chloroplastic (RNA-binding protein CP29A) (RNA-binding protein cp29),RNA-binding protein CP29B, chloroplastic (Ribonucleoprotein At2g37220),Chloroplast RNA-binding protein 29 chloroplast [GO:0009507]; intracellular ribonucleoprotein complex [GO:0030529]; RNA binding [GO:0003723]; cold acclimation [GO:0009631]; mRNA processing [GO:0006397]; RNA stabilization [GO:0043489],chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; intracellular ribonucleoprotein complex [GO:0030529]; stromule [GO:0010319]; thylakoid [GO:0009579]; mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; innate immune response [GO:0045087]; mRNA processing [GO:0006397]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; thylakoid [GO:0009579]; mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]; cold acclimation [GO:0009631]; response to cold [GO:0009409]; RNA processing [GO:0006396]; RNA splicing [GO:0008380]; RNA stabilization [GO:0043489] locus:2049721;,locus:2084061; AT3G53460,AT2G37220 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EAUT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 domain-containing protein NA NA NA NA NA NA NA ENOG411EAUW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNF2 family N-terminal domain NA NA NA NA NA NA NA ENOG411EAUV Q9LQY3,Q8VY92 P24D9_ARATH,P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta9 (p24 family protein delta2c) (p24delta2c) (p24 family protein delta9) (p24delta9),Transmembrane emp24 domain-containing protein p24delta10 (p24 family protein delta10) (p24delta10) (p24 family protein delta2d) (p24delta2d) FUNCTION: Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). {ECO:0000250}. MISCELLANEOUS: The lumenal coiled-coil domain is required for the Golgi subcellular location. R-ATH-6807878;R-ATH-6811434; 24397,24414 Transmembrane emp24 domain-containing protein p24delta9 (p24 family protein delta2c) (p24delta2c) (p24 family protein delta9) (p24delta9),Transmembrane emp24 domain-containing protein p24delta10 (p24 family protein delta10) (p24delta10) (p24 family protein delta2d) (p24delta2d) endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi cisterna membrane [GO:0032580]; integral component of membrane [GO:0016021]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2200630;,locus:2007196; AT1G26690,AT1G69460 Emp24 gp25L p24 family NA NA NA NA NA NA NA ENOG411EAUY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EXOIII NA NA NA NA NA NA NA ENOG411EAUX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EAUZ Q8RXC3 Q8RXC3_ARATH Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein At4g16050) 76382 Aminotransferase-like, plant mobile domain family protein (Uncharacterized protein At4g16050) chloroplast [GO:0009507]; transaminase activity [GO:0008483] locus:2129975; AT4G16050 Plant mobile domain NA NA NA NA NA NA NA ENOG411EAUA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DnaJ_C NA NA NA NA NA NA NA ENOG411EAUC Q0WQM3,A0A1P8ASF7 Q0WQM3_ARATH,A0A1P8ASF7_ARATH Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At1g62970),Chaperone DnaJ-domain superfamily protein 87708,70784 Chaperone DnaJ-domain superfamily protein (Uncharacterized protein At1g62970),Chaperone DnaJ-domain superfamily protein cytosol [GO:0005829] locus:2015529; AT1G62970 DnaJ domain NA NA NA NA NA NA NA ENOG411EAUB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sucrose-6-phosphate phosphohydrolase C-terminal NA NA NA NA NA NA NA ENOG411EAUE F21M11.2,MRH10.13 Q9ZWC4,Q9FNC4 Q9ZWC4_ARATH,Q9FNC4_ARATH At1g04040/F21M11_2 (F21M11.2 protein) (HAD superfamily, subfamily IIIB acid phosphatase) (Similar to acid phosphatase),HAD superfamily, subfamily IIIB acid phosphatase (Putative vegetative storage protein) (Vegetative storage protein-like) ARA:AT1G04040-MONOMER;,ARA:AT5G44020-MONOMER; 31096,31056 At1g04040/F21M11_2 (F21M11.2 protein) (HAD superfamily, subfamily IIIB acid phosphatase) (Similar to acid phosphatase),HAD superfamily, subfamily IIIB acid phosphatase (Putative vegetative storage protein) (Vegetative storage protein-like) cell wall [GO:0005618]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; acid phosphatase activity [GO:0003993],chloroplast [GO:0009507]; membrane [GO:0016020]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; acid phosphatase activity [GO:0003993] locus:2024102;,locus:2172447; AT1G04040,AT5G44020 acid phosphatase class B family protein NA NA NA NA NA NA NA ENOG411EAUD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EAUG Q0WS99 Q0WS99_ARATH At2g17787 (Cylicin) 36842 At2g17787 (Cylicin) locus:1006230116; AT2G17787 NA NA NA NA NA NA NA NA ENOG411EAUF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SacI homology domain Os11g0309000 protein (Fragment) A0A0P0Y2B3 A0A0P0Y2B3_ORYSJ Os11g0309000 OSNPB_110309000 ENOG411EAUI NAC101 Q9LVA1 NC101_ARATH NAC domain-containing protein 101 (ANAC101) (Protein VASCULAR RELATED NAC-DOMAIN 6) DISRUPTION PHENOTYPE: Defects in metaxylem vessel formation in seedling roots. {ECO:0000269|PubMed:16103214}. FUNCTION: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', and to the tracheary elements (TE) specific regulating cis-element (TERE), 5'-CTTNAAAGCNA-3', in the promoter of target genes (e.g. genes involved in secondary wall biosynthesis, cell wall modification such as xylan accumulation, and programmed cell death) (PubMed:20935069, PubMed:20952636, PubMed:20488898). Involved in xylem formation in roots and shoots, especially regulating metaxylem vessel differentiation by promoting immature xylem vessel-specific genes expression, especially genes regulating programmed cell death (PCD) and secondary wall formation in tracheary elements (TE) (PubMed:16103214, PubMed:20952636, PubMed:20488898). Can activate MYB25, MYB46, MYB58, MYB63, MYB83, MYB103, CESA4, LBD15, LBD30, ERF115, XCP1, XCP2, NAC010/SND3, KNAT7, ASL19 and ASL20 expression (PubMed:17890373, PubMed:18952777, PubMed:19088331, PubMed:19122102, PubMed:19808805, PubMed:20935069, PubMed:20952636). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:20488898, ECO:0000269|PubMed:20935069, ECO:0000269|PubMed:20952636}. 39730 NAC domain-containing protein 101 (ANAC101) (Protein VASCULAR RELATED NAC-DOMAIN 6) nucleus [GO:0005634]; secondary cell wall [GO:0009531]; protein homodimerization activity [GO:0042803]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell wall organization [GO:0071555]; metaxylem development [GO:0090058]; multicellular organism development [GO:0007275]; positive regulation of programmed cell death [GO:0043068]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cell wall macromolecule metabolic process [GO:0010981]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to cytokinin [GO:0009735]; response to fungus [GO:0009620]; transcription, DNA-templated [GO:0006351]; xylan metabolic process [GO:0045491]; xylem development [GO:0010089]; xylem vessel member cell differentiation [GO:0048759] DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem, especially newly proliferating cells derived presumably from pericycle. {ECO:0000269|PubMed:16103214}. TISSUE SPECIFICITY: Expressed in root inner metaxylem vessels and in hypocotyl vessels (PubMed:18445131, PubMed:18952777). Present in root developing xylems (PubMed:16103214). Accumulates in the xylem but not in interfascicular fibers or pith cells in inflorescence stems. Absent from secondary xylem in roots (PubMed:18952777). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:18952777}. locus:2167923; AT5G62380 NAC-domain protein 101 NA NA NA NA NA NA NA ENOG411EAUH ARI9,ARI11,ARI10 Q9SKC3,Q9SKC2,Q9SKC4 ARI9_ARATH,ARI11_ARATH,ARI10_ARATH Probable E3 ubiquitin-protein ligase ARI9 (EC 2.3.2.-) (ARIADNE-like protein ARI9) (Protein ariadne homolog 9) (RING-type E3 ubiquitin transferase ARI9),Probable E3 ubiquitin-protein ligase ARI11 (EC 2.3.2.-) (ARIADNE-like protein ARI11) (Protein ariadne homolog 11) (RING-type E3 ubiquitin transferase ARI11),Probable E3 ubiquitin-protein ligase ARI10 (EC 2.3.2.-) (ARIADNE-like protein ARI10) (Protein ariadne homolog 10) (RING-type E3 ubiquitin transferase ARI10) FUNCTION: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. {ECO:0000250, ECO:0000269|PubMed:12446796}. PATHWAY: Protein modification; protein ubiquitination. R-ATH-8951664; 2.3.2.- 62916,62388,59448 Probable E3 ubiquitin-protein ligase ARI9 (EC 2.3.2.-) (ARIADNE-like protein ARI9) (Protein ariadne homolog 9) (RING-type E3 ubiquitin transferase ARI9),Probable E3 ubiquitin-protein ligase ARI11 (EC 2.3.2.-) (ARIADNE-like protein ARI11) (Protein ariadne homolog 11) (RING-type E3 ubiquitin transferase ARI11),Probable E3 ubiquitin-protein ligase ARI10 (EC 2.3.2.-) (ARIADNE-like protein ARI10) (Protein ariadne homolog 10) (RING-type E3 ubiquitin transferase ARI10) cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2045188;,locus:2045178;,locus:2045223; AT2G31770,AT2G31780,AT2G31760 Might act as an E3 ubiquitin-protein ligase or as part of E3 complex which accepts ubiquitin from specific E2 ubiquitin- conjugating enzymes and then transfers it to substrates (By similarity) NA NA NA NA NA NA NA ENOG411EAUK F11F8_9 Q9SF52,F4K1A0 Q9SF52_ARATH,F4K1A0_ARATH Putative non-LTR reverse transcriptase (Ribonuclease H-like superfamily protein),Reverse transcriptase-like protein 55747,15790 Putative non-LTR reverse transcriptase (Ribonuclease H-like superfamily protein),Reverse transcriptase-like protein nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964] locus:2074979;,locus:504955107; AT3G09510,AT5G26617 Inherit from KOG: Retrotransposon protein Os01g0780100 protein,Os07g0513450 protein,Os04g0448401 protein Q5ZCE7,B9FXH3,A0A0P0WAQ4 Q5ZCE7_ORYSJ,B9FXH3_ORYSJ,A0A0P0WAQ4_ORYSJ P0010B10.22 Os01g0780100 OSNPB_010780100,Os07g0513450 OsJ_24426 OSNPB_070513450,Os04g0448401 OSNPB_040448401 ENOG411EAUJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Membrane transport protein NA NA NA NA NA NA NA ENOG411EAUM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Coatomer WD associated region Coatomer subunit beta'-2 (Beta'-coat protein 2) (Beta'-COP 2),Putative coatomer subunit beta'-3 (Beta'-coat protein 3) (Beta'-COP 3),Os02g0209000 protein (Fragment),Os06g0143900 protein (Fragment),Os02g0209100 protein (Fragment) Q6H8D5,Q6H8D6,A0A0P0VGA6,A0A0P0WSW0,A0A0P0WSG1,A0A0N7KEW9 COB22_ORYSJ,COB23_ORYSJ,A0A0P0VGA6_ORYSJ,A0A0P0WSW0_ORYSJ,A0A0P0WSG1_ORYSJ,A0A0N7KEW9_ORYSJ Os02g0209100 LOC_Os02g11840 OJ1006_A02.24,Os02g0209000 LOC_Os02g11830 OJ1006_A02.22,Os02g0209000 OSNPB_020209000,Os06g0143900 OSNPB_060143900,Os02g0209100 OSNPB_020209100 FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}. ENOG411EAUN FAR7,FAR5,FAR1,FAR4,FAR8 Q9FMQ9,Q0WRB0,Q39152,Q9LXN3,Q1PEI6,A0A1P8BF24,A0A1P8BF25,A0A1P8BDD4,A0A1I9LRC1,A0A1I9LMU0,A0A1P8BF09,A0A1P8BF17,A0A1I9LRL6,A0A1I9LRC0 FACR7_ARATH,FACR5_ARATH,FACR1_ARATH,FACR4_ARATH,FACR8_ARATH,A0A1P8BF24_ARATH,A0A1P8BF25_ARATH,A0A1P8BDD4_ARATH,A0A1I9LRC1_ARATH,A0A1I9LMU0_ARATH,A0A1P8BF09_ARATH,A0A1P8BF17_ARATH,A0A1I9LRL6_ARATH,A0A1I9LRC0_ARATH Putative fatty acyl-CoA reductase 7,Probable fatty acyl-CoA reductase 5 (EC 1.2.1.84),Fatty acyl-CoA reductase 1 (EC 1.2.1.84),Probable fatty acyl-CoA reductase 4 (EC 1.2.1.84),Fatty acyl-CoA reductase 8 (EC 1.2.1.84),Fatty acyl-CoA reductase (EC 1.2.1.84) Knockdown: Abnormal suberin composition in roots and seed coat; No other phenotypes detected-O. Rowland-2010,Abnormal suberin composition in roots and seed coat; No other phenotypes detected-O. Rowland-2010 FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols (PubMed:20571114, PubMed:24005667). Catalyzes specifically the formation of C18:0 fatty alcohol (PubMed:20571114, PubMed:24005667). Provides the fatty alcohols required for synthesis of suberin in roots, seed coat and wound-induced leaf tissue (PubMed:20571114). Provides the fatty alcohols required for synthesis of alkyl hydroxycinnamates in root waxes (PubMed:22797656). {ECO:0000269|PubMed:20571114, ECO:0000269|PubMed:22797656, ECO:0000269|PubMed:24005667}.,FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols (PubMed:19062129, PubMed:20571114). Catalyzes specifically the formation of C18:0 and C22:0 fatty alcohols. Provides the fatty alcohols required for synthesis of suberin in roots, seed coat and wound-induced leaf tissue (PubMed:20571114). Provides the fatty alcohols required for synthesis of alkyl hydroxycinnamates in root waxes (PubMed:22797656). {ECO:0000269|PubMed:19062129, ECO:0000269|PubMed:20571114, ECO:0000269|PubMed:22797656}.,FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols (PubMed:20571114). Catalyzes specifically the formation of C18:0 and C20:0 fatty alcohols. Provides the fatty alcohols required for synthesis of suberin in roots, seed coat and wound-induced leaf tissue (PubMed:20571114). Provides the fatty alcohols required for synthesis of alkyl hydroxycinnamates in root waxes (PubMed:22797656). {ECO:0000269|PubMed:20571114, ECO:0000269|PubMed:22797656}.,FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols (PubMed:19062129, PubMed:24005667). Catalyzes specifically the formation of C16:0 fatty alcohol (PubMed:24005667). {ECO:0000269|PubMed:19062129, ECO:0000269|PubMed:24005667}.,FUNCTION: Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. {ECO:0000256|RuleBase:RU363097}. ARA:AT5G22420-MONOMER;,ARA:AT3G44550-MONOMER;,ARA:AT5G22500-MONOMER;,ARA:AT3G44540-MONOMER;,ARA:AT3G44560-MONOMER; R-ATH-8848584; 1.2.1.84;1.2.1.B25;,1.2.1.42;1.2.1.50;1.2.1.84;1.2.1.B25;,1.2.1.50; 1.2.1.84 46818,56429,55481,56218,56473,40941,34929,44329,46675,43974,42718,37140,35124,51401 Putative fatty acyl-CoA reductase 7,Probable fatty acyl-CoA reductase 5 (EC 1.2.1.84),Fatty acyl-CoA reductase 1 (EC 1.2.1.84),Probable fatty acyl-CoA reductase 4 (EC 1.2.1.84),Fatty acyl-CoA reductase 8 (EC 1.2.1.84),Fatty acyl-CoA reductase (EC 1.2.1.84) intracellular membrane-bounded organelle [GO:0043231]; fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; lipid metabolic process [GO:0006629]; long-chain fatty-acyl-CoA metabolic process [GO:0035336]; suberin biosynthetic process [GO:0010345],intracellular membrane-bounded organelle [GO:0043231]; fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; long-chain-fatty-acyl-CoA reductase activity [GO:0050062]; lipid metabolic process [GO:0006629]; long-chain fatty-acyl-CoA metabolic process [GO:0035336]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; suberin biosynthetic process [GO:0010345],chloroplast [GO:0009507]; plasma membrane [GO:0005886]; fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; long-chain-fatty-acyl-CoA reductase activity [GO:0050062]; lipid metabolic process [GO:0006629]; long-chain fatty-acyl-CoA metabolic process [GO:0035336]; response to salt stress [GO:0009651]; response to wounding [GO:0009611]; suberin biosynthetic process [GO:0010345],fatty-acyl-CoA reductase (alcohol-forming) activity [GO:0080019]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in the endodermal cell layer surrounding the central vasculature in roots. Expressed in floral organs of very young unopened buds and receptacle of siliques. {ECO:0000269|PubMed:20571114}.,TISSUE SPECIFICITY: Expressed in the endodermal cell layer surrounding the central vasculature in roots. Expressed in the hilum region of seeds. Expressed in lateral root tips, cotyledons, the shoot apex, young leaves, petals, stamen filaments, and receptacle of siliques. {ECO:0000269|PubMed:20571114}.,TISSUE SPECIFICITY: Expressed in the endodermal cell layer surrounding the central vasculature in roots. Expressed in the hilum region of seeds. Expressed in stamen filaments and receptacle of siliques. {ECO:0000269|PubMed:20571114}. locus:2176407;,locus:2076023;,locus:2171107;,locus:2076028;,locus:2076038; AT5G22420,AT3G44550,AT5G22500,AT3G44540,AT3G44560 oxidoreductase acting on the CH-CH group of donors NA NA NA NA NA NA NA ENOG411EAU1 FAF2 Q8GXU9 FAF2_ARATH Protein FANTASTIC FOUR 2 FUNCTION: Regulates the size of the shoot meristem by modulating the CLV3-WUS feedback loop. Can repress WUS but is under negative control by CLV3. {ECO:0000269|PubMed:21176196}. 27255 Protein FANTASTIC FOUR 2 regulation of meristem growth [GO:0010075] DEVELOPMENTAL STAGE: Expressed throughout development. Increased expression in the shoot apex during the transition to flowering. Induced in the inflorescence vasculature and young flower buds as flowering commenced. {ECO:0000269|PubMed:21176196}. TISSUE SPECIFICITY: Expressed in the shoot apex, stamens, carpels and young siliques. Detected in provascular and vascular tissue, and in the center of the vegetative and inflorescence meristems. Expressed in the funiculus. In roots and leaves, predominantly expressed in phloem. {ECO:0000269|PubMed:21176196}. locus:2014560; AT1G03170 Protein of unknown function (DUF3049) NA NA NA NA NA NA NA ENOG411EAU0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) Glutamate receptor A0A0P0XNE5 A0A0P0XNE5_ORYSJ Os09g0428300 OSNPB_090428300 FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. ENOG411EAU3 Q8GX47,Q9SA65 CAP3_ARATH,CAP4_ARATH Putative clathrin assembly protein At4g02650,Putative clathrin assembly protein At1g03050 68233,66971 Putative clathrin assembly protein At4g02650,Putative clathrin assembly protein At1g03050 clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897] locus:2132382;,locus:2007524; AT4G02650,AT1G03050 ENTH NA NA NA NA NA NA NA ENOG411EAU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EAU5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF26 Os07g0537600 protein A0A0P0X6S6 A0A0P0X6S6_ORYSJ Os07g0537600 OSNPB_070537600 ENOG411EAU4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Copper/zinc superoxide dismutase (SODC) NA NA NA NA NA NA NA ENOG411EAU7 CIPK18 Q9LP51 CIPKI_ARATH CBL-interacting serine/threonine-protein kinase 18 (EC 2.7.11.1) (SNF1-related kinase 3.20) (SOS2-like protein kinase PKS22) FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. 2.7.11.1 58543 CBL-interacting serine/threonine-protein kinase 18 (EC 2.7.11.1) (SNF1-related kinase 3.20) (SOS2-like protein kinase PKS22) intracellular [GO:0005622]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] locus:2029974; AT1G29230 cbl-interacting protein kinase 18 NA NA NA NA NA NA NA ENOG411EAU6 F4IJ08 WTR15_ARATH WAT1-related protein At2g40900 43049 WAT1-related protein At2g40900 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; L-glutamine transmembrane transporter activity [GO:0015186]; amino acid transmembrane export [GO:0044746]; seed development [GO:0048316] locus:2058460; AT2G40900 Nodulin MtN21 NA NA NA NA NA NA NA ENOG411EAU9 AGL3 P29383 AGL3_ARATH Agamous-like MADS-box protein AGL3 (Protein SEPALLATA 4) Flower meristems behave like inflorescence meristems and continuously elaborate new meristems resulting in the cauliflower phenotype. Eventually flowers resembling those of ap1 single mutants eventually appear and set seeds.,Inflorescences take 7-10 days longer than ap1 cal mutant to begin producing flowers.,Meristem defect intermediate between that of ap1 and ap1 cal mutants. Inflorescences appear caulifower-like early after bolting but soon start producing ap1-like flowers on their periphery.,Early flower mutant phenotypes are lessened in later-arising flowers which appear more normal whilst still displaying significant perturbations of organ development.,Gynoecium often supported by an elongated gynophore.,Many flowers display a loss of fourth whorl determinancy.,Profound changes in early arising flowers. Both organ numbers and organ identity are affected in a highly variable manner.,Stellate trichomes are frequently observed on carpels (never on wild-type).,All flower organs are converted to leaf-like organs most strikingly on their adaxial surface. Abaxial epidermal cells are made up of a mixture of leaf- and sepal-like characteristics. Leaf characteristics include an abundance of branched trichomes.,Adaxial surface of first whorl organs are unaffected.,No visible phenotype. FUNCTION: Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. 29573 Agamous-like MADS-box protein AGL3 (Protein SEPALLATA 4) nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel development [GO:0048440]; cell differentiation [GO:0030154]; maintenance of floral meristem identity [GO:0010076]; petal development [GO:0048441]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; sepal development [GO:0048442]; stamen development [GO:0048443]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in aerial vegetative organs and flowers, but not in roots (PubMed:7632923). Expressed in flower primordia (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:7632923}. locus:2044259; AT2G03710 Transcription factor NA NA NA NA NA NA NA ENOG411EAU8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os11g0175200 protein,Os11g0174432 protein,Os11g0174200 protein,Expressed protein (Os11g0175000 protein) (cDNA clone:002-147-H07, full insert sequence),Os11g0175300 protein (Fragment) Q53PG9,Q53PF9,B9G9N0,Q2R9W0,A0A0P0XZ99 Q53PG9_ORYSJ,Q53PF9_ORYSJ,B9G9N0_ORYSJ,Q2R9W0_ORYSJ,A0A0P0XZ99_ORYSJ Os11g0175200 LOC_Os11g07420 OSNPB_110175200,Os11g0174432 LOC_Os11g07330 OSNPB_110174432,Os11g0174200 OsJ_33147 OSNPB_110174200,Os11g0175000 LOC_Os11g07400 OSNPB_110175000,Os11g0175300 OSNPB_110175300 ENOG411EG5K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cold shock domain protein 2-like protein Os03g0277800 protein,Os01g0546250 protein,Os05g0524666 protein (Fragment) B9F7B8,A2ZU70,A0A0P0WPY9 B9F7B8_ORYSJ,A2ZU70_ORYSJ,A0A0P0WPY9_ORYSJ Os03g0277800 OsJ_10341 OSNPB_030277800,Os01g0546250 OsJ_02155 OSNPB_010546250,Os05g0524666 OSNPB_050524666 ENOG411EG5M IQD26 Q9LK76 Q9LK76_ARATH At3g16490 (IQ-domain 26) 43660 At3g16490 (IQ-domain 26) locus:2088319; AT3G16490 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411EG5B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0566150 protein A0A0P0X7L7 A0A0P0X7L7_ORYSJ Os07g0566150 OSNPB_070566150 ENOG411EG5E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Mov34 NA NA NA NA NA NA NA ENOG411EG5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EG5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411EG5V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger NA NA NA NA NA NA NA ENOG411EG5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG5T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EG58 JAL26 Q84X12 JAL26_ARATH Probable jacalin-related lectin 26 17610 Probable jacalin-related lectin 26 integral component of membrane [GO:0016021]; carbohydrate binding [GO:0030246] locus:504956060; AT2G43745 Jacalin NA NA NA NA NA NA NA ENOG411EG50 COX6B-2,COX6B-3 Q945L0,Q9SUD3 CX6B2_ARATH,CX6B3_ARATH Cytochrome c oxidase subunit 6b-2 (AtCOX6b-2),Cytochrome c oxidase subunit 6b-3 (AtCOX6b-3) FUNCTION: This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase. 9254,9252 Cytochrome c oxidase subunit 6b-2 (AtCOX6b-2),Cytochrome c oxidase subunit 6b-3 (AtCOX6b-3) mitochondrion [GO:0005739] TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:11250078}.,TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:11250078}. locus:505006698;,locus:2133002; AT5G57815,AT4G28060 Cytochrome oxidase c subunit VIb NA NA NA NA NA NA NA ENOG411EG56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA XH domain NA NA NA NA NA NA NA ENOG411E56F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE NA NA NA NA NA NA NA ENOG411EHS3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHS0 DVL9,DVL13 Q6IM92,Q8L7D0 Q6IM92_ARATH,Q8L7D0_ARATH At1g07490 (DVL9) (ROTUNDIFOLIA like 3),DVL13 (ROTUNDIFOLIA like 2) 11693,12651 At1g07490 (DVL9) (ROTUNDIFOLIA like 3),DVL13 (ROTUNDIFOLIA like 2) shoot system development [GO:0048367] locus:2024967;,locus:504955897; AT1G07490,AT2G29125 ROTUNDIFOLIA like 3 NA NA NA NA NA NA NA ENOG411EHS1 RALFL21,RALFL28 A8MRF9,Q9LDU1 RLF21_ARATH,RLF28_ARATH Protein RALF-like 21,Protein RALF-like 28 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 11951,9390 Protein RALF-like 21,Protein RALF-like 28 apoplast [GO:0048046]; intracellular [GO:0005622]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] TISSUE SPECIFICITY: Expressed in seeds and rosettes. {ECO:0000269|PubMed:12611624}. locus:4010713730;,locus:2123091; AT3G04735,AT4G11510 Rapid ALkalinization Factor (RALF) NA NA NA NA NA NA NA ENOG411EHS6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHS7 Q9M892 Q9M892_ARATH AT3g02480/F16B3_11 (F16B3.11 protein) (Late embryogenesis abundant protein (LEA) family protein) 7145 AT3g02480/F16B3_11 (F16B3.11 protein) (Late embryogenesis abundant protein (LEA) family protein) cytosol [GO:0005829]; response to water deprivation [GO:0009414] locus:2076844; AT3G02480 NA NA NA NA NA NA NA NA ENOG411EHS4 A0A1P8ASR6,B3H566,F4I7U4,B6EUC3,B3H505 A0A1P8ASR6_ARATH,B3H566_ARATH,F4I7U4_ARATH,B6EUC3_ARATH,B3H505_ARATH Plant thionin family protein 7931,8817,8925,8603,8657 Plant thionin family protein locus:4010713491;,locus:4010713492; AT1G30972,AT1G30974 Plant thionin family protein NA NA NA NA NA NA NA ENOG411EHS9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TFIIS helical bundle-like domain Expressed protein (Os10g0182100 protein) (Putative transcription elongation factor),Os10g0327500 protein Q94GG7,A0A0P0XTK1 Q94GG7_ORYSJ,A0A0P0XTK1_ORYSJ Os10g0182100 LOC_Os10g10260 OSJNBb0022I16.7 OSNPB_100182100,Os10g0327500 OSNPB_100327500 ENOG411EHSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0604500 protein),Os02g0546050 protein,Os11g0603600 protein,Os11g0603801 protein,Os11g0604200 protein,Os08g0228900 protein,Os05g0360100 protein,Os11g0603700 protein,Os11g0604000 protein,Os05g0151900 protein Q2R1I1,B9F0G8,Q2R1I8,Q2R1I6,Q2R1I3,Q6YZP3,Q5KQB1,Q2R1I7,Q2R1I4,B9FHE5 Q2R1I1_ORYSJ,B9F0G8_ORYSJ,Q2R1I8_ORYSJ,Q2R1I6_ORYSJ,Q2R1I3_ORYSJ,Q6YZP3_ORYSJ,Q5KQB1_ORYSJ,Q2R1I7_ORYSJ,Q2R1I4_ORYSJ,B9FHE5_ORYSJ Os11g0604500 LOC_Os11g39120 Os11g0604500 OsJ_14677 OSNPB_110604500,Os02g0546050 OsJ_07077 OSNPB_020546050,Os11g0603600 LOC_Os11g39050 OsJ_34412 OSNPB_110603600,Os11g0603801 LOC_Os11g39070 OsJ_14680 OSNPB_110603801,Os11g0604200 LOC_Os11g39100 OSNPB_110604200,Os08g0228900 OsJ_26486 OSJNBa0038P10.12 OSJNBb0090H20.25 OSNPB_080228900,Os05g0360100 OsJ_18223 OSJNOa0153K02.3 OSNPB_050360100,Os11g0603700 LOC_Os11g39060 OsJ_34411 OSNPB_110603700,Os11g0604000 LOC_Os11g39090 OsJ_14679 OSNPB_110604000,Os05g0151900 OsJ_17154 OSNPB_050151900 ENOG411EHSF Q9LW05,Q9LKA8 Q9LW05_ARATH,Q9LKA8_ARATH RING/U-box superfamily protein 25531,25059 RING/U-box superfamily protein cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630]; pollen development [GO:0009555],cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630] locus:2093252;,locus:2086380; AT3G15740,AT3G14970 zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EHSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSH Q9ZS96,Q9LFV7,A0A1P8B1C6 Y4478_ARATH,Q9LFV7_ARATH,A0A1P8B1C6_ARATH Uncharacterized protein At4g04775,Uncharacterized protein F14F8_70 (Zinc ion binding protein),GRF zinc finger protein 18345,19372,14914 Uncharacterized protein At4g04775,Uncharacterized protein F14F8_70 (Zinc ion binding protein),GRF zinc finger protein mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104],mediator complex [GO:0016592]; RNA polymerase II transcription cofactor activity [GO:0001104]; response to cadmium ion [GO:0046686] locus:2143231; AT4G04775,AT5G15690 GRF zinc finger NA NA NA NA NA NA NA ENOG411EHSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carb_anhydrase NA NA NA NA NA NA NA ENOG411EHSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSU HIRD11 Q9SLJ2 HRD11_ARATH Dehydrin HIRD11 (Histidine-rich dehydrin of 11 kDa) (AtHIRD11) (Protein SRC1 homolog) FUNCTION: Intrinsically disordered and metal-binding protein. Binds to the divalent cations cobalt, nickel, copper and zinc, but not to magnesium, calcium, manganese or cadmium (Ref.8). Binding to metal ions decreases disordered state, decreases susceptibility to trypsin and promotes self-association. Can reduce the formation of reactive oxygen species (ROS) in a copper-ascorbate in vitro system (PubMed:23382551). {ECO:0000269|PubMed:23382551, ECO:0000269|Ref.8}. 10796 Dehydrin HIRD11 (Histidine-rich dehydrin of 11 kDa) (AtHIRD11) (Protein SRC1 homolog) chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; cobalt ion binding [GO:0050897]; copper ion binding [GO:0005507]; nickel cation binding [GO:0016151]; zinc ion binding [GO:0008270]; negative regulation of hydrogen peroxide biosynthetic process [GO:0010730] TISSUE SPECIFICITY: Highly expressed in the cambial zone of the stem vasculature (at protein level). Expressed in roots, rosettes leaves, stems, cauline leaves, flowers and siliques. {ECO:0000269|Ref.8}. locus:2020178; AT1G54410 NA NA NA NA NA NA NA NA ENOG411EHSZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHSX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECFJ Q94JX1,A0A1P8B2P9 Q94JX1_ARATH,A0A1P8B2P9_ARATH PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (Uncharacterized protein At2g18090; T27K22.4),PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein 91129,88011 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (Uncharacterized protein At2g18090; T27K22.4),PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein metal ion binding [GO:0046872] locus:2060949; AT2G18090 PHD finger NA NA NA NA NA NA NA ENOG411E7X2 dl4755w Q8GWJ3,O23587,A0A1P8B4Y9 Q8GWJ3_ARATH,O23587_ARATH,A0A1P8B4Y9_ARATH At4g17440 (Chromogranin (DUF1639)) (Uncharacterized protein At4g17440/dl4755w),Chromogranin (DUF1639) (Uncharacterized protein AT4g17440) (Uncharacterized protein dl4755w),Chromogranin (DUF1639) 23167,25290,23618 At4g17440 (Chromogranin (DUF1639)) (Uncharacterized protein At4g17440/dl4755w),Chromogranin (DUF1639) (Uncharacterized protein AT4g17440) (Uncharacterized protein dl4755w),Chromogranin (DUF1639) locus:2129051; AT4G17440 Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411E7X9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7XS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0113600 protein A0A0P0VS93 A0A0P0VS93_ORYSJ Os03g0113600 OSNPB_030113600 ENOG411E7XZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0035M09.6 protein (OSJNBb0015N08.16 protein) (Os04g0606200 protein) (cDNA clone:J013078K12, full insert sequence) (cDNA clone:J013090O07, full insert sequence),Os08g0230600 protein (cDNA clone:002-182-A06, full insert sequence) Q7X8J0,Q6ZCR6 Q7X8J0_ORYSJ,Q6ZCR6_ORYSJ Os04g0606200 Os04g0606200 OsJ_16075 OSJNBa0035M09.6 OSJNBb0015N08.16 OSNPB_040606200,Os08g0230600 Os08g0230600 OsJ_26495 OSNPB_080230600 P0461A06.7 ENOG411DQ0P Q9LVJ0,Q9LP80,F4HYF6,F4HYF8 UVB31_ARATH,Q9LP80_ARATH,F4HYF6_ARATH,F4HYF8_ARATH UV-B-induced protein At3g17800, chloroplastic,Alanine-tRNA ligase, putative (DUF760) (At1g48450/T1N15_5) (T1N15.6) (Uncharacterized protein At1g48450),Alanine-tRNA ligase, putative (DUF760) 46067,47189,36808,37968 UV-B-induced protein At3g17800, chloroplastic,Alanine-tRNA ligase, putative (DUF760) (At1g48450/T1N15_5) (T1N15.6) (Uncharacterized protein At1g48450),Alanine-tRNA ligase, putative (DUF760) chloroplast [GO:0009507]; response to ozone [GO:0010193]; response to UV-B [GO:0010224]; response to wounding [GO:0009611],ligase activity [GO:0016874] locus:2088490;,locus:2198055; AT3G17800,AT1G48450 Protein of unknown function (DUF760) Expressed protein (Os03g0717900 protein) (cDNA clone:J013026C05, full insert sequence),Expressed protein (Os03g0717900 protein) (cDNA clone:001-023-C09, full insert sequence) Q10DW0,Q10DV9 Q10DW0_ORYSJ,Q10DV9_ORYSJ Os03g0717900 LOC_Os03g50870 Os03g0717900 OSNPB_030717900,Os03g0717900 LOC_Os03g50870 OSNPB_030717900 ENOG411DQ01 F21F14.40 Q9M277,F4IX01 Q9M277_ARATH,F4IX01_ARATH AT3g61870/F21F14_40 (Plant/protein) (Uncharacterized protein F21F14.40),Plant/protein 29585,27805 AT3g61870/F21F14_40 (Plant/protein) (Uncharacterized protein F21F14.40),Plant/protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid [GO:0009534]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2079517; AT3G61870 NA Os02g0122500 protein Q6Z728 Q6Z728_ORYSJ P0575F10.3 Os02g0122500 OSNPB_020122500 ENOG411ED6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptidase M16C associated NA NA NA NA NA NA NA ENOG411E18G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond (By similarity) Os03g0391400 protein (Fragment),Os08g0401800 protein (Fragment) Q0DRE3,A0A0P0XFM1 Q0DRE3_ORYSJ,A0A0P0XFM1_ORYSJ Os03g0391400 OSNPB_030391400,Os08g0401800 OSNPB_080401800 ENOG411E18B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) Os08g0524400 protein (Putative auxin-induced protein) Q84QW4 Q84QW4_ORYSJ OJ1191_A10.104 Os08g0524400 OSNPB_080524400 ENOG411E18K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0781900 protein,Os08g0182100 protein,Os08g0185566 protein A0A0P0VQD1,A0A0P0XCL0,A0A0P0XCG0 A0A0P0VQD1_ORYSJ,A0A0P0XCL0_ORYSJ,A0A0P0XCG0_ORYSJ Os02g0781900 OSNPB_020781900,Os08g0182100 OSNPB_080182100,Os08g0185566 OSNPB_080185566 ENOG411E18V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) Q10Q30 Q10Q30_ORYSJ Os03g0211800 LOC_Os03g11330 OsJ_09887 OSNPB_030211800 ENOG411EKF2 F4IMC6 F4IMC6_ARATH Transcription factor-like protein 22543 Transcription factor-like protein locus:2828076; AT2G07714 PHD finger protein MALE PHD finger protein PERSISTENT TAPETAL CELL 1 Q67V61 PTC1_ORYSJ PTC1 Os09g0449000 LOC_Os09g27620 OsJ_29577 P0047B10.27 DISRUPTION PHENOTYPE: Male sterility due to lack of tapetal programmed cell death (PCD), delayed tapetal degeneration, abnormal pollen wall formation and aborted microspore development. {ECO:0000269|PubMed:21515697}. FUNCTION: Probable transcriptional activator required for tapetal programmed cell death (PCD) and degeneration, and pollen development in anthers. {ECO:0000269|PubMed:21515697}. ENOG411EKF6 APRR8,ARR2 O23100,Q9ZWJ9 APRR8_ARATH,ARR2_ARATH Putative two-component response regulator-like APRR8 (Pseudo-response regulator 8),Two-component response regulator ARR2 (Receiver-like protein 5) DISRUPTION PHENOTYPE: Retarded growth and development, and early flowering. Reduced responses to ethylene and cytokinin. {ECO:0000269|PubMed:15282545}. Small rosette; Early flowering; Insensitive to cytokinin and ethylene-K. Harter-2004 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. 41295,72578 Putative two-component response regulator-like APRR8 (Pseudo-response regulator 8),Two-component response regulator ARR2 (Receiver-like protein 5) nucleus [GO:0005634]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay response regulator activity [GO:0000156]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to cytokinin stimulus [GO:0071368]; cytokinin-activated signaling pathway [GO:0009736]; ethylene-activated signaling pathway [GO:0009873]; leaf senescence [GO:0010150]; regulation of root meristem growth [GO:0010082]; regulation of seed growth [GO:0080113]; regulation of stomatal movement [GO:0010119]; response to cytokinin [GO:0009735]; response to ethylene [GO:0009723]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. locus:2134548;,locus:2130095; AT4G00760,AT4G16110 response regulator Two-component response regulator ORR27 (OsRRA16) Q75HW2 ORR27_ORYSJ RR27 Os05g0395600 LOC_Os05g32880 OSJNBa0014C03.14 OSJNBb0092G21.3 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, lesion mimic, low tillering, altered kernel color, viviparous and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. ENOG411EKF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR25 (OsRRB3),Two-component response regulator,Os06g0647200 protein Q67W50,A0A0P0WZH5,A0A0P0WZT0 ORR25_ORYSJ,A0A0P0WZH5_ORYSJ,A0A0P0WZT0_ORYSJ RR25 ORR5 Os06g0647200 LOC_Os06g43910 OJ1226_A12.26 OSJNBa0062J02.10,Os06g0647200 OSNPB_060647200 DISRUPTION PHENOTYPE: Dwarf, chlorina, lesion mimic, abnormal shoot, low tillering and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.,FUNCTION: Transcriptional activator that binds specific DNA sequence. {ECO:0000256|PIRNR:PIRNR036392}. ENOG411EKF5 ARR10,ARR12 O49397,P62598 ARR10_ARATH,ARR12_ARATH Two-component response regulator ARR10 (Receiver-like protein 4),Two-component response regulator ARR12 severe primary root abnormalities; premature termination of primary root growth; substantially reduced sensitivity to cytokinin in the hypocotyl growth response assay; smaller rosette diameter; altered chlorophyll and anthocyanin production.,Mutant root meristems are larger than those of wild type already at 2 dpg but they stopped growing after reaching a fixed number of cells at 5 dpg.,The root-meristem size of the double mutant was indistinguishable from that of the ahk3 mutant.,The development and size of the double mutant root meristems were comparable to those of ahk3-3 meristems. Short roots; Large RAM arrests development over time-S. Sabatini-2007 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.,FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. 61652,65626 Two-component response regulator ARR10 (Receiver-like protein 4),Two-component response regulator ARR12 nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay response regulator activity [GO:0000156]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to cytokinin stimulus [GO:0071368]; cytokinin-activated signaling pathway [GO:0009736]; primary root development [GO:0080022]; regulation of anthocyanin metabolic process [GO:0031537]; regulation of chlorophyll biosynthetic process [GO:0010380]; regulation of cytokinin-activated signaling pathway [GO:0080036]; regulation of root meristem growth [GO:0010082]; regulation of seed growth [GO:0080113]; response to cytokinin [GO:0009735]; response to water deprivation [GO:0009414]; root development [GO:0048364]; shoot system development [GO:0048367]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Detected immediately after seed germination. {ECO:0000269|PubMed:17363254}. TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}.,TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in leaves. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254}. locus:2116587;,locus:2040194; AT4G31920,AT2G25180 REC NA NA NA NA NA NA NA ENOG411EKF8 ARR8 O80365,Q9ZQJ8 ARR8_ARATH,Q9ZQJ8_ARATH Two-component response regulator ARR8 (Response reactor 3),Putative two-component response regulator protein (Two-component responsive regulator-related / response regulator protein-like protein) Slightly fewer lateral roots-J. Kieber-2004 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000269|PubMed:14973166}. 25471,15670 Two-component response regulator ARR8 (Response reactor 3),Putative two-component response regulator protein (Two-component responsive regulator-related / response regulator protein-like protein) nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; circadian rhythm [GO:0007623]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay signal transduction system [GO:0000160] TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:9607306}. locus:2040282;,locus:2054895; AT2G41310,AT2G07440 REC NA NA NA NA NA NA NA ENOG411EKFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR7 (OsRR7) (OsRRA5) Q0PVB3 ORR7_ORYSJ RR7 RR Os07g0449700 LOC_Os07g26720 OJ1047_A06.126 DISRUPTION PHENOTYPE: Dwarf, narrow leaf and low tillering phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411EKFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EKFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR13 (OsRR13) (OsRRA12) Q2HWG0 ORR13_ORYSJ RR13 Os08g0358800 LOC_Os08g26990 OsJ_27037 DISRUPTION PHENOTYPE: Dwarf, narrow leaf and low tillering phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411EKFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0532500 protein,Os08g0532500 protein (Fragment) Q6YZD8,Q0J461 Q6YZD8_ORYSJ,Q0J461_ORYSJ P0702E04.20-1 Os08g0532500 OSNPB_080532500,Os08g0532500 Os08g0532500 OSNPB_080532500 ENOG411EKFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR5 (OsRR5) (OsRRA4) Q2HWH1 ORR5_ORYSJ RR5 Os04g0524300 LOC_Os04g44280 OSJNBb0065J09.13 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering and altered kernal color phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411EKFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor ADP- glucose from Glc-1-P and ATP (By similarity) Glucose-1-phosphate adenylyltransferase large subunit 2, cytosolic (OsAGPL2) (OsAPL2) (EC 2.7.7.27) (ADP-glucose pyrophosphorylase AGPL2) (ADP-glucose synthase AGPL2) (Protein FLOURY ENDOSPERM 6) (Protein GRAIN INCOMPLETE FILLING 2) (Protein SHRUNKEN 1),Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic (OsAGPL3) (OsAPL3) (EC 2.7.7.27) (ADP-glucose pyrophosphorylase AGPL3) (ADP-glucose synthase AGPL3) Q7G065,Q688T8 GLGL2_ORYSJ,GLGL3_ORYSJ AGPL2 APL2 FLO6 GIF2 SHR1 Os01g0633100 LOC_Os01g44220 P0663E10.9,AGPL3 APL3 Os05g0580000 LOC_Os05g50380 10A19I.12 OsJ_19673 OSJNBa0017N18.13 DISRUPTION PHENOTYPE: Shrunken seed endosperm due to a strong reduction in starch synthesis. {ECO:0000269|PubMed:17406793, ECO:0000269|PubMed:24747952, ECO:0000269|PubMed:27957808}. FUNCTION: Involved in synthesis of starch. Catalyzes the synthesis of ADP-glucose, a molecule that serves as an activated glycosyl donor for alpha-1,4-glucan synthesis. Essential for starch synthesis in seed endosperm (PubMed:17406793, Ref.13, PubMed:24747952, PubMed:27957808). Is essential for both catalytic and allosteric regulatory properties of the cytosolic heterotetramer enzyme (PubMed:24747952). {ECO:0000269|PubMed:17406793, ECO:0000269|PubMed:24747952, ECO:0000269|PubMed:27957808, ECO:0000269|Ref.13}.,FUNCTION: Involved in synthesis of starch. Catalyzes the synthesis of ADP-glucose, a molecule that serves as an activated glycosyl donor for alpha-1,4-glucan synthesis. Essential for starch synthesis in leaf chloroplasts. {ECO:0000305|PubMed:17406793}. ENOG411EKFX APS1 P55228 GLGS_ARATH Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) Starch accumulation is not completely abolished in this line but strongly reduced to ~20% of wild-type level at the end of the day under 16h light/8h dark growth conditions.,No visible phenotype.,Strong reduction in maltose accumulation compared to the be2-1 be3-2 double mutant.,In short days plants have delayed growth and were late flowering.In long day conditions plants also had delayed growth but flowering time was unaffected. Lacks ADP-Glc PPase activity in leaves and no starch can be found in leaves or roots. Low starch levels in leaves-J. Chen-1998 FUNCTION: This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. PATHWAY: Glycan biosynthesis; starch biosynthesis. MetaCyc:MONOMER-1822; 2.7.7.27 56651 Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; heterotetrameric ADPG pyrophosphorylase complex [GO:0030931]; ATP binding [GO:0005524]; glucose-1-phosphate adenylyltransferase activity [GO:0008878]; glycogen biosynthetic process [GO:0005978]; photoperiodism, flowering [GO:0048573]; starch biosynthetic process [GO:0019252] TISSUE SPECIFICITY: Leaves. locus:2156263; AT5G48300 This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor ADP- glucose from Glc-1-P and ATP (By similarity) Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic/amyloplastic/cytosolic (OsAGPS2) (OsAPS2) (EC 2.7.7.27) (ADP-glucose pyrophosphorylase AGPS2) (ADP-glucose synthase AGPS2) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) (OsAGPS2a) (OsAGPS2b),Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic/amyloplastic (OsAGPS1) (OsAPS1) (EC 2.7.7.27) (ADP-glucose pyrophosphorylase AGPS1) (ADP-glucose synthase AGPS1),Os08g0345800 protein (Fragment) P15280,Q69T99,A0A0P0XFB4,A0A0P0XF97 GLGS2_ORYSJ,GLGS1_ORYSJ,A0A0P0XFB4_ORYSJ,A0A0P0XF97_ORYSJ AGPS2 APS2 Os08g0345800 LOC_Os08g25734 OsJ_26991 P0410E11.123-1 P0410E11.123-2,AGPS1 APS1 Os09g0298200 LOC_Os09g12660 OJ1381_H04.16 OsJ_28755 P0592C05.40,Os08g0345800 OSNPB_080345800 DISRUPTION PHENOTYPE: Shrunken seed endosperm due to a strong reduction in starch synthesis. {ECO:0000269|PubMed:17406793}. FUNCTION: Involved in synthesis of starch. Catalyzes the synthesis of ADP-glucose, a molecule that serves as an activated glycosyl donor for alpha-1,4-glucan synthesis. The chloroplastic isoform 1 is essential for starch synthesis in leaf chloroplasts and the cytosolic isoform 2 for synthesis in seed endosperm. {ECO:0000269|PubMed:17406793}.,FUNCTION: Involved in synthesis of starch. Catalyzes the synthesis of ADP-glucose, a molecule that serves as an activated glycosyl donor for alpha-1,4-glucan synthesis. Essential for starch synthesis in leaf chloroplasts and endosperm amyloplasts. {ECO:0000269|PubMed:17406793}. ENOG411EKFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nucleotidyl transferase NA NA NA NA NA NA NA ENOG411EKFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR6 (OsRR6) (OsRRA6) Q7XQA6 ORR6_ORYSJ RR6 Os04g0673300 LOC_Os04g57720 OsJ_16592 OSJNBa0018M05.2 OSJNBb0004A17.17 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering and sterility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411EKFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA two-component response regulator ARR9-like NA NA NA NA NA NA NA ENOG411EKFF ARR1,RR1 Q940D0,A0A1I9LLF2 ARR1_ARATH,A0A1I9LLF2_ARATH Two-component response regulator ARR1,Two-component response regulator The root-meristem size of the double mutant was indistinguishable from that of the ahk3 mutant.,severe primary root abnormalities; premature termination of primary root growth; substantially reduced sensitivity to cytokinin in the hypocotyl growth response assay; smaller rosette diameter; altered chlorophyll and anthocyanin production.,The root meristems of the mutant were indistinguishable from those of the wild type up to 4 dpg but became larger at 5 dpg and kept increasing in size thereafter.,The development and size of the double mutant root meristems were comparable to those of ahk3-3 meristems. Long roots-A. Oka-2001 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}.,FUNCTION: Transcriptional activator that binds specific DNA sequence. {ECO:0000256|PIRNR:PIRNR036392}. 75177,67749 Two-component response regulator ARR1,Two-component response regulator nucleus [GO:0005634]; DNA binding [GO:0003677]; phosphorelay response regulator activity [GO:0000156]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to cytokinin stimulus [GO:0071368]; cytokinin-activated signaling pathway [GO:0009736]; primary root development [GO:0080022]; regulation of anthocyanin metabolic process [GO:0031537]; regulation of chlorophyll biosynthetic process [GO:0010380]; regulation of cytokinin-activated signaling pathway [GO:0080036]; regulation of root meristem growth [GO:0010082]; regulation of seed growth [GO:0080113]; response to cytokinin [GO:0009735]; response to water deprivation [GO:0009414]; root development [GO:0048364]; shoot system development [GO:0048367]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; phosphorelay signal transduction system [GO:0000160]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed only from 5 days post germination onward, when the fixed meristem cell number is established. {ECO:0000269|PubMed:17363254}. TISSUE SPECIFICITY: Detected in the whole plant. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:9891419}. locus:2093668; AT3G16857 response regulator NA NA NA NA NA NA NA ENOG411EKFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC Two-component response regulator ORR4 (OsRR4) Q942A1 ORR4_ORYSJ RR4 Os01g0952500 LOC_Os01g72330 OsJ_04783 P0431G06.9 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411EKFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA two-component response regulator NA NA NA NA NA NA NA ENOG411EKFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA two-component response regulator Two-component response regulator ORR11 (OsRR11) (OsRRA8) Q6H468 ORR11_ORYSJ RR11 Os02g0631700 LOC_Os02g42060 B1250G12.17 OsJ_07618 DISRUPTION PHENOTYPE: Dwarf, narrow leaf and low tillering phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling. {ECO:0000250|UniProtKB:Q9ZWS9}. ENOG411EKFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA REC NA NA NA NA NA NA NA ENOG411EKFN ARR17,RR17 Q9FPR6,A0A1I9LQB0 ARR17_ARATH,A0A1I9LQB0_ARATH Two-component response regulator ARR17,Response regulator 17 FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling (By similarity). {ECO:0000250, ECO:0000269|PubMed:14973166}. 16863,16991 Two-component response regulator ARR17,Response regulator 17 nucleus [GO:0005634]; phosphorelay response regulator activity [GO:0000156]; cytokinin-activated signaling pathway [GO:0009736]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],intracellular [GO:0005622]; phosphorelay signal transduction system [GO:0000160] locus:2102509; AT3G56380 REC NA NA NA NA NA NA NA ENOG411EKFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA response regulator Two-component response regulator ORR1 (OsRR1) (OsRRA9) Q2HWG4 ORR1_ORYSJ RR1 Os04g0442300 LOC_Os04g36070 DISRUPTION PHENOTYPE: Dwarf, albino, lesion mimic and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling (By similarity). Involved in adventitious (crown) root initiation under the regulation of CRL5 (PubMed:21481033). {ECO:0000250|UniProtKB:Q9ZWS9, ECO:0000269|PubMed:21481033}. MISCELLANEOUS: Crl5 mutant plants overexpressing RR1 display significantly increased adventitious (crown) root formation compared with crl5 mutant plants. {ECO:0000269|PubMed:22383541}. ENOG411DVAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Insulinase (Peptidase family M16) Os01g0966300 protein (Putative mitochondrial processing peptidase) (cDNA clone:J033023J10, full insert sequence) Q5JJV3 Q5JJV3_ORYSJ Os01g0966300 OsJ_04885 OSNPB_010966300 P0458E05.29 ENOG411DVAJ TIC56 Q7Y1W1 TIC56_ARATH Protein TIC 56, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 56) (AtTIC56) DISRUPTION PHENOTYPE: Severe defects during embryogenesis, producing abnormal embryos and thereby leading to a lethality of young seedlings. {ECO:0000269|PubMed:23372012}. FUNCTION: Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope. {ECO:0000269|PubMed:23372012}. 61625 Protein TIC 56, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 56) (AtTIC56) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; plastid [GO:0009536]; protein transporter activity [GO:0008565]; protein import into chloroplast stroma [GO:0045037] locus:2149735; AT5G01590 NA NA NA NA NA NA NA NA ENOG411DVAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA storekeeper protein Os09g0451700 protein (Fragment) Q0J1B9 Q0J1B9_ORYSJ Os09g0451700 Os09g0451700 OSNPB_090451700 ENOG411DVAF TIP4-1 O82316 TIP41_ARATH Aquaporin TIP4-1 (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (Tonoplast intrinsic protein 4-1) (AtTIP4;1) FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. Transports urea in yeast cells in a pH-independent manner. {ECO:0000269|PubMed:14576283}. R-ATH-432047; 26073 Aquaporin TIP4-1 (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (Tonoplast intrinsic protein 4-1) (AtTIP4;1) central vacuole [GO:0042807]; integral component of plasma membrane [GO:0005887]; plant-type vacuole membrane [GO:0009705]; water channel activity [GO:0015250]; ion transmembrane transport [GO:0034220] DEVELOPMENTAL STAGE: Starts to be expressed in seedlings from 2 days ays after germination. {ECO:0000269|PubMed:14576283}. TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:11806824}. locus:2043505; AT2G25810 Aquaporin Probable aquaporin TIP4-3 (Tonoplast intrinsic protein 4-3) (OsTIP4;3) Q9LWR2 TIP43_ORYSJ TIP4-3 Os01g0232000 LOC_Os01g13120 P0431F01.24 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411DVAB F4JM22 F4JM22_ARATH LOW PSII ACCUMULATION-like protein 38887 LOW PSII ACCUMULATION-like protein chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; chloroplast organization [GO:0009658] locus:2117803; AT4G28740 Protein of unknown function (DUF3493) OSJNBa0043L24.5 protein (OSJNBb0002J11.14 protein) (Os04g0507100 protein) (cDNA clone:001-041-H09, full insert sequence),Os06g0235500 protein Q7X6M7,A0A0N7KLU0 Q7X6M7_ORYSJ,A0A0N7KLU0_ORYSJ Os04g0507100 OsJ_15394 OSJNBa0043L24.5 OSJNBb0002J11.14 OSNPB_040507100,Os06g0235500 OSNPB_060235500 ENOG411DVAY TBL20 Q9M896,A0A1I9LLY1 TBL20_ARATH,A0A1I9LLY1_ARATH Protein trichome birefringence-like 20,TRICHOME BIREFRINGENCE-LIKE 20 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 55845,56831 Protein trichome birefringence-like 20,TRICHOME BIREFRINGENCE-LIKE 20 Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; O-acetyltransferase activity [GO:0016413]; cell wall organization or biogenesis [GO:0071554],integral component of membrane [GO:0016021] locus:2076909; AT3G02440 Pfam:DUF231 Leaf senescence protein-like (Os06g0273200 protein),Leaf senescence protein-like (Os06g0273500 protein) (cDNA clone:002-101-D01, full insert sequence) Q5VQ32,Q8H2I6 Q5VQ32_ORYSJ,Q8H2I6_ORYSJ Os06g0273200 OSNPB_060273200 P0662B01.39,Os06g0273500 Os06g0273500 OsJ_20946 OSNPB_060273500 P0662B01.46 P0676F10.7 ENOG411DVAU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA leaf senescence related protein Os05g0470000 protein,Lustrin A-like (Os01g0830700 protein) (cDNA clone:J033058D09, full insert sequence) B9FKP6,Q8S237 B9FKP6_ORYSJ,Q8S237_ORYSJ Os05g0470000 OsJ_18877 OSNPB_050470000,Os01g0830700 Os01g0830700 OSNPB_010830700 P0446G04.22 ENOG411DVAV UGT73B4,UGT73B5 Q7Y232,F4IIG6,F4IIG3 U73B4_ARATH,F4IIG6_ARATH,F4IIG3_ARATH UDP-glycosyltransferase 73B4 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT73B4) (EC 2.4.1.91),Glycosyltransferase (EC 2.4.1.-) FUNCTION: Possesses quercetin 3-O-glucosyltransferase and low 7-O-glucosyltransferase activities in vitro. Also active in vitro on benzoates and benzoate derivatives. Can detoxify the explosive 2,4,6-trinitrotoluene in plant by forming O- or C-glucose conjugates. {ECO:0000269|PubMed:11641410, ECO:0000269|PubMed:15352060, ECO:0000269|PubMed:18702669}. MISCELLANEOUS: Plants overexpressing UGT73B4 show enhanced root growth in seedlings grown in presence of 2,4,6-trinitrotoluene. 2.4.1.-; 2.4.1.91,2.4.1.- 53961,53704,55194 UDP-glycosyltransferase 73B4 (EC 2.4.1.-) (Flavonol 3-O-glucosyltransferase UGT73B4) (EC 2.4.1.91),Glycosyltransferase (EC 2.4.1.-) cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; daphnetin 3-O-glucosyltransferase activity [GO:0102360]; flavonol 3-O-glucosyltransferase activity [GO:0047893]; myricetin 3-O-glucosyltransferase activity [GO:0102425]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; UDP-glucosyltransferase activity [GO:0035251]; metabolic process [GO:0008152]; response to other organism [GO:0051707]; response to toxic substance [GO:0009636],transferase activity, transferring hexosyl groups [GO:0016758]; metabolic process [GO:0008152] TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:16306146}. locus:2053669; AT2G15490,AT2G15480 flavonol 3-O-glucosyltransferase activity Os01g0598000 protein (Fragment) A0A0P0V4U0 A0A0P0V4U0_ORYSJ Os01g0598000 OSNPB_010598000 ENOG411DVA5 MJB21.6,AP22.58 Q45GG0,Q45GG2,Q8RY64,F4JR96,A0A1P8B5X2,A0A1P8BD16,F4K318 Q45GG0_ARATH,Q45GG2_ARATH,Q8RY64_ARATH,F4JR96_ARATH,A0A1P8B5X2_ARATH,A0A1P8BD16_ARATH,F4K318_ARATH Expressed protein,AT4g37080/C7A10_280,Uncharacterized protein 55422,60939,67573,68956,57412,58227,60811 Expressed protein,AT4g37080/C7A10_280,Uncharacterized protein locus:2165487;,locus:2115164; AT5G42690,AT4G37080 expressed protein Os09g0463300 protein (Fragment) A0A0N7KQY3,A0A0P0XMW0 A0A0N7KQY3_ORYSJ,A0A0P0XMW0_ORYSJ Os09g0463300 OSNPB_090463300 ENOG411DVA6 PCMP-E6 P0C8Q5 PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760 64586 Pentatricopeptide repeat-containing protein At4g22760 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2132589; AT4G22760 Pentatricopeptide repeat-containing protein Os08g0162200 protein (Putative pentatricopeptide (PPR) repeat-containing protein) (cDNA clone:002-118-E03, full insert sequence) Q84SD0 Q84SD0_ORYSJ P0577B11.133 Os08g0162200 OsJ_26139 OSNPB_080162200 ENOG411DVA1 MPA24.10 Q9FLH2,F4IWV2 Q9FLH2_ARATH,F4IWV2_ARATH 2-oxoglutarate dehydrogenase, E1 component (Putative 2-oxoglutarate dehydrogenase E1 component),2-oxoglutarate dehydrogenase, E1 component ARA:AT5G65750-MONOMER; R-ATH-71064;R-ATH-71403; 116399,115163 2-oxoglutarate dehydrogenase, E1 component (Putative 2-oxoglutarate dehydrogenase E1 component),2-oxoglutarate dehydrogenase, E1 component mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252]; cobalt ion binding [GO:0050897]; oxoglutarate dehydrogenase (succinyl-transferring) activity [GO:0004591]; thiamine pyrophosphate binding [GO:0030976]; zinc ion binding [GO:0008270]; response to cadmium ion [GO:0046686]; tricarboxylic acid cycle [GO:0006099],mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252]; cobalt ion binding [GO:0050897]; oxoglutarate dehydrogenase (succinyl-transferring) activity [GO:0004591]; thiamine pyrophosphate binding [GO:0030976]; zinc ion binding [GO:0008270]; tricarboxylic acid cycle [GO:0006099] locus:2170000;,locus:2099981; AT5G65750,AT3G55410 2-oxoglutarate dehydrogenase Os07g0695800 protein (Putative 2-oxoglutarate dehydrogenase, E1 subunit) (cDNA clone:J023097A04, full insert sequence),Os04g0390000 protein (Fragment),Os04g0390000 protein,Os07g0695800 protein (Fragment) Q6Z3X5,A0A0P0W9J4,A0A0P0W9W2,A0A0P0WA25,A0A0N7KP44 Q6Z3X5_ORYSJ,A0A0P0W9J4_ORYSJ,A0A0P0W9W2_ORYSJ,A0A0P0WA25_ORYSJ,A0A0N7KP44_ORYSJ Os07g0695800 OSNPB_070695800 P0627E10.28,Os04g0390000 OSNPB_040390000,Os07g0695800 OSNPB_070695800 ENOG411DVA2 MIRO2 F4J0W4 MIRO2_ARATH Mitochondrial Rho GTPase 2 (AtMIRO2) (EC 3.6.5.-) (Calcium-binding GTPase) (AtCBG) (Miro-related GTPase 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions (PubMed:16832621, PubMed:18344283). Mutant plants show increased sensitivity to ABA, NaCl or mannitol during germination (PubMed:16832621). {ECO:0000269|PubMed:16832621, ECO:0000269|PubMed:18344283}. FUNCTION: Calcium-binding mitochondrial GTPase involved in calcium signaling during salt stress response (PubMed:16832621). May play a role in the progression of embryonic cell division, development of haploid male and female gametes, and pollen tube growth (PubMed:21494602). {ECO:0000269|PubMed:16832621, ECO:0000269|PubMed:21494602}. R-ATH-194840;R-ATH-5689880; 3.6.5.- 71408 Mitochondrial Rho GTPase 2 (AtMIRO2) (EC 3.6.5.-) (Calcium-binding GTPase) (AtCBG) (Miro-related GTPase 2) integral component of mitochondrial outer membrane [GO:0031307]; mitochondrion [GO:0005739]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; mitochondrion organization [GO:0007005]; response to abscisic acid [GO:0009737]; small GTPase mediated signal transduction [GO:0007264] TISSUE SPECIFICITY: Expressed roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:16832621, ECO:0000269|PubMed:18344283}. locus:2099232; AT3G63150 Mitochondrial GTPase involved in mitochondrial trafficking (By similarity) NA NA NA NA NA NA NA ENOG411DTS5 JGB O48716 JGB_ARATH Protein JINGUBANG DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but hyperactive pollen germination. {ECO:0000269|PubMed:27468890}. FUNCTION: Negative regulator of pollen germination (PubMed:27468890). Prevents pollination in moist environments by inhibiting jasmonic acid synthesis (PubMed:27468890). Stabilizes pollen tube growth (PubMed:27468890). {ECO:0000269|PubMed:27468890}. 51437 Protein JINGUBANG cytoplasm [GO:0005737]; nucleus [GO:0005634]; pollen germination [GO:0009846] DEVELOPMENTAL STAGE: Detected first in bicellular pollen and then most abundant in tricellular and mature pollen and growing pollen tubes. {ECO:0000269|PubMed:27468890}. TISSUE SPECIFICITY: Expressed specifically in pollen (PubMed:27468890). Not detected in roots, stems or leaves (PubMed:27468890). {ECO:0000269|PubMed:27468890}. locus:2066276; AT2G26490 WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DTS4 F11F8_41,Cand6,MJC20.20,Cand7 Q9C5T6,Q9LZ39,Q9FHX6,F4JY11 Q9C5T6_ARATH,Q9LZ39_ARATH,Q9FHX6_ARATH,F4JY11_ARATH At3g09570 (Lung seven transmembrane receptor family protein) (Uncharacterized protein At3g09570) (Uncharacterized protein F11F8_41),At5g02630 (Lung seven transmembrane receptor family protein) (Uncharacterized protein At5g02630/T22P11_220) (Uncharacterized protein T22P11_220),Dbj|BAA84809.1 (Lung seven transmembrane receptor family protein) (Uncharacterized protein At5g42090) (Uncharacterized protein At5g42090; MJC20.20),Lung seven transmembrane receptor family protein 50084,48883,50226,50245 At3g09570 (Lung seven transmembrane receptor family protein) (Uncharacterized protein At3g09570) (Uncharacterized protein F11F8_41),At5g02630 (Lung seven transmembrane receptor family protein) (Uncharacterized protein At5g02630/T22P11_220) (Uncharacterized protein T22P11_220),Dbj|BAA84809.1 (Lung seven transmembrane receptor family protein) (Uncharacterized protein At5g42090) (Uncharacterized protein At5g42090; MJC20.20),Lung seven transmembrane receptor family protein integral component of membrane [GO:0016021],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802],integral component of membrane [GO:0016021]; response to molecule of bacterial origin [GO:0002237]; root morphogenesis [GO:0010015] locus:2074949;,locus:2181783;,locus:2165815;,locus:2146233; AT3G09570,AT5G02630,AT5G42090,AT5G18520 Lung seven transmembrane receptor Os05g0462500 protein (Putative lung seven transmembrane receptor 1),Os06g0132100 protein (Putative lung seven transmembrane receptor 1) (cDNA clone:001-124-E04, full insert sequence) (cDNA clone:J023041H11, full insert sequence) (cDNA clone:J023143I01, full insert sequence),Os01g0836800 protein (Putative lung seven transmembrane receptor 1) (cDNA clone:001-038-A01, full insert sequence) (cDNA clone:001-207-H02, full insert sequence) (cDNA clone:002-173-F04, full insert sequence) (cDNA clone:J013063N02, full insert sequence) (cDNA clone:J013071A10, full insert sequence),Os01g0836700 protein Q6L517,Q9SNM0,Q8S1S0,A0A0P0VA50 Q6L517_ORYSJ,Q9SNM0_ORYSJ,Q8S1S0_ORYSJ,A0A0P0VA50_ORYSJ Os05g0462500 OJ1525_A02.8 OsJ_18827 OSNPB_050462500,134P10.3 Os06g0132100 OsJ_20008 OSNPB_060132100 P0493C11.33 P0679C08.15,Os01g0836800 Os01g0836800 OSNPB_010836800 P0506B12.33,Os01g0836700 OSNPB_010836700 ENOG411DTS7 Q9C941,Q9LRP8 Q9C941_ARATH,Q9LRP8_ARATH At1g52770 (Phototropic-responsive NPH3 family protein) (Putative non-phototropic hypocotyl) (Putative non-phototropic hypocotyl; 25081-26618),Non-phototropic hypocotyl-like protein (Phototropic-responsive NPH3 family protein) (Putative non-phototropic hypocotyl protein) 50313,50204 At1g52770 (Phototropic-responsive NPH3 family protein) (Putative non-phototropic hypocotyl) (Putative non-phototropic hypocotyl; 25081-26618),Non-phototropic hypocotyl-like protein (Phototropic-responsive NPH3 family protein) (Putative non-phototropic hypocotyl protein) locus:2011551;,locus:2092555; AT1G52770,AT3G15570 phototropic-responsive NPH3 family protein Os01g0176400 protein (Fragment),Os05g0178000 protein,Os01g0943100 protein (Fragment),Os09g0468600 protein (Fragment),Os08g0323500 protein,Os01g0943950 protein Q0JQ83,Q6AT13,A0A0P0VCM1,A0A0P0XPI2,A0A0P0XEH0,A0A0P0VCN1 Q0JQ83_ORYSJ,Q6AT13_ORYSJ,A0A0P0VCM1_ORYSJ,A0A0P0XPI2_ORYSJ,A0A0P0XEH0_ORYSJ,A0A0P0VCN1_ORYSJ Os01g0176400 Os01g0176400 OSNPB_010176400,Os05g0178000 Os05g0178000 OSJNBa0029B02.16 OSNPB_050178000,Os01g0943100 OSNPB_010943100,Os09g0468600 OSNPB_090468600,Os08g0323500 OSNPB_080323500,Os01g0943950 OSNPB_010943950 ENOG411DTS6 Q9C5C4,F4JPZ7 ARGE_ARATH,F4JPZ7_ARATH Acetylornithine deacetylase (EC 3.5.1.16) (N-acetylornithinase) (AO) (Acetylornithinase) (NAO),Peptidase M20/M25/M40 family protein PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine from N(2)-acetyl-L-ornithine (linear): step 1/1. ARA:AT4G17830-MONOMER; 3.5.1.16 48217,48743 Acetylornithine deacetylase (EC 3.5.1.16) (N-acetylornithinase) (AO) (Acetylornithinase) (NAO),Peptidase M20/M25/M40 family protein acetylornithine deacetylase activity [GO:0008777]; metal ion binding [GO:0046872]; arginine biosynthetic process [GO:0006526],cytosol [GO:0005829]; acetylornithine deacetylase activity [GO:0008777]; ornithine biosynthetic process [GO:0006592] locus:2140995; AT4G17830 acetylornithine Os02g0690800 protein (Putative silverleaf whitefly-induced protein 1) (cDNA clone:001-204-H10, full insert sequence) (cDNA clone:J033050F24, full insert sequence) Q6ZGS9 Q6ZGS9_ORYSJ Os02g0690800 OJ1148_D05.1 OsJ_07995 OSNPB_020690800 ENOG411DTS1 Q9C6C7,B3H5B7 Q9C6C7_ARATH,B3H5B7_ARATH Myosin-2 heavy chain-like protein (Uncharacterized protein F10F5.13),Myosin-2 heavy chain-like protein 92779,88975 Myosin-2 heavy chain-like protein (Uncharacterized protein F10F5.13),Myosin-2 heavy chain-like protein locus:2007258; AT1G49870 NA Os03g0604600 protein (Fragment) A0A0P0W024 A0A0P0W024_ORYSJ Os03g0604600 OSNPB_030604600 ENOG411DTS0 Q9SU89 Q9SU89_ARATH Fanconi anemia group E protein FANCE protein (Uncharacterized protein AT4g29560) (Uncharacterized protein T16L4.70) 55963 Fanconi anemia group E protein FANCE protein (Uncharacterized protein AT4g29560) (Uncharacterized protein T16L4.70) locus:2134398; AT4G29560 Fanconi Anaemia group E protein FANCE Os06g0573700 protein (Os06g0573800 protein) Q5Z7K9 Q5Z7K9_ORYSJ Os06g0573800 Os06g0573700 OsJ_21764 OSJNBa0006A22.32 OSNPB_060573800 ENOG411DTS3 Q8GXC5 Q8GXC5_ARATH DNA-binding protein (Putative DNA-binding protein) (Zinc knuckle (CCHC-type) family protein) 28677 DNA-binding protein (Putative DNA-binding protein) (Zinc knuckle (CCHC-type) family protein) DNA binding [GO:0003677]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270] locus:2005719; AT1G75560 zinc finger protein GIS2-like Os10g0545300 protein (Putative zinc finger protein) (Zinc knuckle family protein, expressed) (cDNA clone:J013002B20, full insert sequence) (cDNA clone:J033034B05, full insert sequence) Q9AV38 Q9AV38_ORYSJ LOC_Os10g39820 Os10g0545300 OsJ_32342 OSJNBa0001O14.4 OSNPB_100545300 ENOG411DTS2 CID10,CID11,CID12 Q9SG10,Q9LPI5,Q9S7N9,F4IEC7,F4JME0 CID10_ARATH,CID11_ARATH,CID12_ARATH,F4IEC7_ARATH,F4JME0_ARATH Polyadenylate-binding protein-interacting protein 10 (PABP-interacting protein 10) (Poly(A)-binding protein-interacting protein 10) (PAM2-containing protein CID10) (Protein CTC-INTERACTING DOMAIN 10),Polyadenylate-binding protein-interacting protein 11 (PABP-interacting protein 11) (Poly(A)-binding protein-interacting protein 11) (PAM2-containing protein CID11) (Protein CTC-INTERACTING DOMAIN 11),Polyadenylate-binding protein-interacting protein 12 (PABP-interacting protein 12) (Poly(A)-binding protein-interacting protein 12) (PAM2-containing protein CID12) (Protein CTC-INTERACTING DOMAIN 12) (RNA-binding protein 37) (AtRBP37),CTC-interacting domain 11,CTC-interacting domain 12 FUNCTION: Binds nucleotic acids in vitro. {ECO:0000269|PubMed:9177318}. 38738,38952,36780,44314,35597 Polyadenylate-binding protein-interacting protein 10 (PABP-interacting protein 10) (Poly(A)-binding protein-interacting protein 10) (PAM2-containing protein CID10) (Protein CTC-INTERACTING DOMAIN 10),Polyadenylate-binding protein-interacting protein 11 (PABP-interacting protein 11) (Poly(A)-binding protein-interacting protein 11) (PAM2-containing protein CID11) (Protein CTC-INTERACTING DOMAIN 11),Polyadenylate-binding protein-interacting protein 12 (PABP-interacting protein 12) (Poly(A)-binding protein-interacting protein 12) (PAM2-containing protein CID12) (Protein CTC-INTERACTING DOMAIN 12) (RNA-binding protein 37) (AtRBP37),CTC-interacting domain 11,CTC-interacting domain 12 nucleus [GO:0005634]; mRNA binding [GO:0003729],nucleus [GO:0005634]; RNA binding [GO:0003723],nucleus [GO:0005634]; nucleotide binding [GO:0000166]; RNA binding [GO:0003723],mRNA binding [GO:0003729],RNA binding [GO:0003723] DEVELOPMENTAL STAGE: Expressed during early-embryogenesis in the embryo proper and the suspensor up to late heart stage. Expression is not detected in the embryo during maturation. {ECO:0000269|PubMed:9177318}. TISSUE SPECIFICITY: Expressed in cauline leaves, stems, rosette leaves, immature siliques and primary inflorescences. {ECO:0000269|PubMed:15650869}.,TISSUE SPECIFICITY: Expressed in cauline leaves, stems, immature siliques and primary inflorescences. {ECO:0000269|PubMed:15650869}.,TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and siliques. Detected in flowers only in growing organs: gynoecium, petals, stamenal filaments, anther walls and ovules. {ECO:0000269|PubMed:15650869, ECO:0000269|PubMed:9177318}. locus:2082961;,locus:2139242;,locus:2035629; AT3G49390,AT1G32790,AT4G10610 RNA-binding protein Os09g0314500 protein B9G2U1 B9G2U1_ORYSJ Os09g0314500 OsJ_28831 OSNPB_090314500 ENOG411DTS9 SIA2 Q8RY00,F4JF56 SIA2_ARATH,F4JF56_ARATH Sialyltransferase-like protein 2 (EC 2.4.-.-),Glycosyltransferase family 29 (Sialyltransferase) family protein DISRUPTION PHENOTYPE: Male gametophytic lethality when homozygous. May be due to defect in pollen grain germination and pollen tube growth. {ECO:0000269|PubMed:24825296}. FUNCTION: May be involved in the transfer of 2-keto-3-deoxy-D-lyxo-heptulosaric acid (Dha) and/or 2-keto-3-deoxy-D-manno-octulosonic acid (Kdo) on the homogalacturonan backbone of rhamnogalacturonan-II. Required for efficient pollen grain germination and pollen tube elongation (PubMed:24825296). Does not possess sialyltransferase activity in vitro (PubMed:19470101). {ECO:0000269|PubMed:19470101, ECO:0000269|PubMed:24825296}. 2.4.-.- 49480,48387 Sialyltransferase-like protein 2 (EC 2.4.-.-),Glycosyltransferase family 29 (Sialyltransferase) family protein endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757]; oligosaccharide metabolic process [GO:0009311]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; protein N-linked glycosylation via asparagine [GO:0018279]; sialylation [GO:0097503],sialyltransferase activity [GO:0008373]; protein glycosylation [GO:0006486] locus:2099468; AT3G48820 Glycosyl transferase family 29 protein Sialyltransferase-like protein 4 (OsSTLP4) (EC 2.4.-.-),Os02g0119000 protein Q6ZH45,A0A0P0VDZ4 STLP4_ORYSJ,A0A0P0VDZ4_ORYSJ STLP4 Os02g0118400 LOC_Os02g02620 OJ1217_F02.7,Os02g0119000 OSNPB_020119000 FUNCTION: May possess sialyltransferase-like activity in vitro. {ECO:0000250|UniProtKB:Q94DD4}. ENOG411DTS8 HSP70-8 Q9SKY8 HSP7H_ARATH Heat shock 70 kDa protein 8 (Heat shock protein 70-8) (AtHsp70-8) (Heat-shock protein 70T-2) FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity). {ECO:0000250}. 60989 Heat shock 70 kDa protein 8 (Heat shock protein 70-8) (AtHsp70-8) (Heat-shock protein 70T-2) ATP binding [GO:0005524]; response to heat [GO:0009408]; response to high light intensity [GO:0009644]; response to hydrogen peroxide [GO:0042542] locus:2045457; AT2G32120 heat- shock DnaK protein, expressed (Os03g0218500 protein) (cDNA clone:J033102M24, full insert sequence) Q10PW8 Q10PW8_ORYSJ Os03g0218500 LOC_Os03g11910 Os03g0218500 OsJ_09939 OSNPB_030218500 ENOG411DTSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0638200 protein (Fragment) Q0DZ92 Q0DZ92_ORYSJ Os02g0638200 Os02g0638200 OSNPB_020638200 ENOG411DTSD MYB61,AtMYB50,MYB50 Q8VZQ2,Q9C695,A0A1P8AWH1 MYB61_ARATH,Q9C695_ARATH,A0A1P8AWH1_ARATH Transcription factor MYB61 (Myb-related protein 61) (AtMYB61),At1g57560 (DNA-binding protein, putative) (MYB transcription factor) (Myb domain protein 50),Myb domain protein 50 DISRUPTION PHENOTYPE: Increased stomatal pore opening (PubMed:16005292). Reduced amount of seed mucilage (PubMed:19401413). Early germination, slow growth, delayed flowering and senescence (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996}. Defective in regulation of stomatal pore size. Increased stomatal pore opening in light and dark. Reduced mucilage extrusion from seeds-M. Bevan-2001 FUNCTION: Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. 40891,35460,31083 Transcription factor MYB61 (Myb-related protein 61) (AtMYB61),At1g57560 (DNA-binding protein, putative) (MYB transcription factor) (Myb domain protein 50),Myb domain protein 50 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of stomatal movement [GO:0010119]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; root development [GO:0048364]; seed coat development [GO:0010214]; transcription, DNA-templated [GO:0006351]; vasculature development [GO:0001944]; xylem development [GO:0010089],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of stomatal movement [GO:0010119]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to auxin [GO:0009733]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751],DNA binding [GO:0003677] TISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}. locus:2012375;,locus:2027508; AT1G09540,AT1G57560 Transcription factor MYB16 protein (Myb transcription factor) (Os05g0140100 protein) (Putative myb transcription factor) (cDNA clone:J023018J24, full insert sequence),Os01g0285300 protein (Putative MYB2) (Putative transcription factor (Myb)) (cDNA clone:J013087D08, full insert sequence) Q688D6,Q9AQV2 Q688D6_ORYSJ,Q9AQV2_ORYSJ myb16 Os05g0140100 OsJ_17058 OSJNBb0111O13.9 OSNPB_050140100,OSJNBa0004B13.27 Os01g0285300 OsJ_01345 OSNPB_010285300 P0498A12.22 ENOG411DTSG Q9M0A0 Q9M0A0_ARATH AT4g30600/F17I23_60 (Signal recognition particle receptor alpha subunit family protein) (Signal recognition particle receptor-like protein) 69573 AT4g30600/F17I23_60 (Signal recognition particle receptor alpha subunit family protein) (Signal recognition particle receptor-like protein) endoplasmic reticulum [GO:0005783]; signal recognition particle receptor complex [GO:0005785]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; signal recognition particle binding [GO:0005047]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614] locus:2118701; AT4G30600 signal recognition particle receptor Os08g0480100 protein (Putative signal recognition particle receptor) (Signal recognition particle receptor) (cDNA clone:J033051D02, full insert sequence),Os08g0480100 protein (Putative signal recognition particle receptor) Q6Z246,Q6Z245 Q6Z246_ORYSJ,Q6Z245_ORYSJ OJ1113_A10.31-1 Os08g0480100 OSJNBb0092C08.1-1 OSNPB_080480100,Os08g0480100 OJ1113_A10.31-2 OSJNBb0092C08.1-2 OSNPB_080480100 ENOG411DTSF T2J13.210 Q9SMT3,Q1PF10 Q9SMT3_ARATH,Q1PF10_ARATH Endo-polygalacturonase-like protein (Glycoside hydrolase family 28 protein) (Pectin lyase-like superfamily protein),Glycoside hydrolase family 28 protein/polygalacturonase family protein (Pectin lyase-like superfamily protein) ARA:AT3G48950-MONOMER;,ARA:AT2G23900-MONOMER; 51200,51645 Endo-polygalacturonase-like protein (Glycoside hydrolase family 28 protein) (Pectin lyase-like superfamily protein),Glycoside hydrolase family 28 protein/polygalacturonase family protein (Pectin lyase-like superfamily protein) extracellular region [GO:0005576]; lyase activity [GO:0016829]; polygalacturonase activity [GO:0004650]; carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555] locus:2101313;,locus:2061396; AT3G48950,AT2G23900 Glycosyl hydrolases family 28 Os03g0124900 protein (Polygalacturonase, putative, expressed) Q10SE9 Q10SE9_ORYSJ Os03g0124900 LOC_Os03g03350 Os03g0124900 OsJ_09236 OSNPB_030124900 ENOG411DTSA Q9SZ91 Q9SZ91_ARATH NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At4g09750) (Uncharacterized protein F17A8.100) ARA:AT4G09750-MONOMER; 35159 NAD(P)-binding Rossmann-fold superfamily protein (Uncharacterized protein At4g09750) (Uncharacterized protein F17A8.100) oxidoreductase activity [GO:0016491] locus:2118435; AT4G09750 Dehydrogenase reductase SDR family Os06g0590301 protein (Putative short chain dehydrogenase/reductase) (cDNA, clone: J065128I21, full insert sequence) Q69X86 Q69X86_ORYSJ Os06g0590301 OsJ_21836 OSNPB_060590301 P0633E08.23 ENOG411DTSC CTPA2 O23614 CTPA2_ARATH Carboxyl-terminal-processing peptidase 2, chloroplastic (EC 3.4.21.102) (D1 C-terminal processing protease 2) (Photosystem II D1 protein processing peptidase 2) FUNCTION: Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation. {ECO:0000250|UniProtKB:O04073}. 3.4.21.102 55763 Carboxyl-terminal-processing peptidase 2, chloroplastic (EC 3.4.21.102) (D1 C-terminal processing protease 2) (Photosystem II D1 protein processing peptidase 2) chloroplast thylakoid lumen [GO:0009543]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977]; endopeptidase activity [GO:0004175]; serine-type peptidase activity [GO:0008236] locus:2129411; AT4G17740 TSPc Os02g0815700 protein C7IY31 C7IY31_ORYSJ Os02g0815700 Os02g0815700 OSNPB_020815700 ENOG411DTSB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MatE Protein DETOXIFICATION (Multidrug and toxic compound extrusion protein) Q6ZB84 Q6ZB84_ORYSJ OJ1113_A10.30-1 Os08g0480000 OSNPB_080480000 ENOG411DTSM Q9SA60 PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100, mitochondrial 89239 Pentatricopeptide repeat-containing protein At1g03100, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2007549; AT1G03100 Pentatricopeptide repeat-containing protein Os10g0422566 protein A0A0P0XUQ6 A0A0P0XUQ6_ORYSJ Os10g0422566 OSNPB_100422566 ENOG411DTSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein Os03g0327700 protein (Fragment),Os12g0558775 protein A0A0P0VWZ2,A0A0P0YBD2 A0A0P0VWZ2_ORYSJ,A0A0P0YBD2_ORYSJ Os03g0327700 OSNPB_030327700,Os12g0558775 OSNPB_120558775 ENOG411DTSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter F family member ABC transporter family protein, expressed (Os11g0603200 protein) (cDNA clone:J013035E03, full insert sequence) Q2R1J1 Q2R1J1_ORYSJ Os11g0603200 LOC_Os11g39020 Os11g0603200 OSNPB_110603200 ENOG411DTSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transmembrane protein 189-like Os08g0187900 protein A0A0P0XCP4 A0A0P0XCP4_ORYSJ Os08g0187900 OSNPB_080187900 ENOG411DTSK HRF1 F4J8C0,Q94BQ9 F4J8C0_ARATH,Q94BQ9_ARATH HRF1 protein (Integral membrane HRF1 family protein),Integral membrane HRF1 family protein (Uncharacterized protein At1g30890) 30174,30028 HRF1 protein (Integral membrane HRF1 family protein),Integral membrane HRF1 family protein (Uncharacterized protein At1g30890) COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; Golgi apparatus [GO:0005794]; integral component of Golgi membrane [GO:0030173]; ER to Golgi vesicle-mediated transport [GO:0006888],COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; integral component of Golgi membrane [GO:0030173]; ER to Golgi vesicle-mediated transport [GO:0006888] locus:2097583;,locus:2015716; AT3G59500,AT1G30890 Integral membrane HRF1 family protein Os06g0620600 protein (cDNA clone:006-206-C05, full insert sequence),OSJNBa0019G23.6 protein (Os04g0165400 protein) Q0DAW9,Q7XS61 Q0DAW9_ORYSJ,Q7XS61_ORYSJ Os06g0620600 Os06g0620600 OSNPB_060620600,Os04g0165400 Os04g0165400 OSJNBa0019G23.6 OSNPB_040165400 ENOG411DTSJ ECA4,ECA2,ECA1 Q9XES1,O23087,P92939 ECA4_ARATH,ECA2_ARATH,ECA1_ARATH Calcium-transporting ATPase 4, endoplasmic reticulum-type (EC 3.6.3.8),Calcium-transporting ATPase 2, endoplasmic reticulum-type (EC 3.6.3.8),Calcium-transporting ATPase 1, endoplasmic reticulum-type (EC 3.6.3.8) FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to an endomembrane compartment.,FUNCTION: This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the endoplasmic reticulum lumen. Also regulate manganese ion homeostasis by pumping it into endomembrane compartments. Can also transport zinc. ARA:AT1G07670-MONOMER;,ARA:AT4G00900-MONOMER;MetaCyc:MONOMER-14601;,ARA:AT1G07810-MONOMER;MetaCyc:MONOMER-14600; 3.6.3.8; 3.6.3.8 116180,115830,116366 Calcium-transporting ATPase 4, endoplasmic reticulum-type (EC 3.6.3.8),Calcium-transporting ATPase 2, endoplasmic reticulum-type (EC 3.6.3.8),Calcium-transporting ATPase 1, endoplasmic reticulum-type (EC 3.6.3.8) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; metal ion binding [GO:0046872],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; metal ion binding [GO:0046872]; calcium ion transport [GO:0006816],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of endoplasmic reticulum membrane [GO:0030176]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; calcium-transporting ATPase activity [GO:0005388]; metal ion binding [GO:0046872]; calcium ion transport [GO:0006816]; response to cadmium ion [GO:0046686]; response to manganese ion [GO:0010042] locus:2026555;,locus:2134623;,locus:2026580; AT1G07670,AT4G00900,AT1G07810 Calcium-transporting ATPase Os05g0120700 protein (Fragment),Os03g0281600 protein (Fragment) Q0DL67,Q0DSY0,A0A0P0VW67 Q0DL67_ORYSJ,Q0DSY0_ORYSJ,A0A0P0VW67_ORYSJ Os05g0120700 Os05g0120700 OSNPB_050120700,Os03g0281600 OSNPB_030281600 ENOG411DTSU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cytochrome P450 Cytochrome P450 84A1, putative, expressed (Os10g0512400 protein),Cytochrome P450 84A1, putative, expressed (Ferulate-5-hydroxylase) (Os03g0112900 protein),Os04g0539300 protein Q109F2,Q8GZY1,A0A0P0WD92 Q109F2_ORYSJ,Q8GZY1_ORYSJ,A0A0P0WD92_ORYSJ LOC_Os10g36848 Os10g0512400 OSNPB_100512400,OSJNBa0090O10.1 OsF5HL2 LOC_Os03g02180 Os03g0112900 OsJ_09145 OSNPB_030112900,Os04g0539300 OSNPB_040539300 ENOG411DTST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Riboflavin biosynthesis FAD synthetase, chloroplastic (EC 2.7.7.2) (FAD pyrophosphorylase) (FMN adenylyltransferase) (Flavin adenine dinucleotide synthase) Q10BX9 RIBF_ORYSJ RIBF Os03g0801700 LOC_Os03g58710 OsJ_12987 FUNCTION: Catalyzes the adenylation of flavin mononucleotide (FMN) to form flavin adenine dinucleotide (FAD) coenzyme. {ECO:0000250}. ENOG411DTSW Q9SUD8 PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010 79110 Pentatricopeptide repeat-containing protein At4g28010 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2132937; AT4G28010 Pentatricopeptide repeat-containing protein Os07g0621100 protein (Pentatricopeptide repeat protein-like) Q8LHA7 Q8LHA7_ORYSJ P0594D10.121 Os07g0621100 OSNPB_070621100 ENOG411DTSV SDN4,SDN2,SDN3,SDN1 Q9SN09,Q9FFG1,Q8RXK2,A3KPE8,A0A1P8BE91,A0A1P8BE97,A0A1I9LRJ2,F4K3N3 SDN4_ARATH,SDN2_ARATH,SDN3_ARATH,SDN1_ARATH,A0A1P8BE91_ARATH,A0A1P8BE97_ARATH,A0A1I9LRJ2_ARATH,F4K3N3_ARATH Putative small RNA degrading nuclease 4 (EC 3.1.-.-),Small RNA degrading nuclease 2 (EC 3.1.-.-),Small RNA degrading nuclease 3 (EC 3.1.-.-),Small RNA degrading nuclease 1 (EC 3.1.-.-),Small RNA degrading nuclease 3,Small RNA degrading nuclease 1 DISRUPTION PHENOTYPE: Plants do not show a phenotype alteration due to the redundancy with other SDN ribonucleases. {ECO:0000269|PubMed:18787168}.,DISRUPTION PHENOTYPE: No visible phenotype; due to the redundancy with other SDN ribonucleases. Simultaneous knockdown of SDN1, SDN2 and SDN3 results in elevated miRNA levels and pleiotropic developmental defects. {ECO:0000269|PubMed:18787168}. FUNCTION: Putative 3'-5' exonuclease degrading single-stranded small RNAs.,FUNCTION: 3'-5' exonuclease degrading single-stranded small RNAs.,FUNCTION: 3'-5' exonuclease degrading single-stranded small RNAs. {ECO:0000269|PubMed:18787168}. MISCELLANEOUS: Presence of 2'-O-methyl or 3'poly-U in the small RNA deters the activity of SDN1. 3.1.-.- 36215,53182,87465,46364,71325,71945,35023,55806 Putative small RNA degrading nuclease 4 (EC 3.1.-.-),Small RNA degrading nuclease 2 (EC 3.1.-.-),Small RNA degrading nuclease 3 (EC 3.1.-.-),Small RNA degrading nuclease 1 (EC 3.1.-.-),Small RNA degrading nuclease 3,Small RNA degrading nuclease 1 nucleus [GO:0005634]; exonuclease activity [GO:0004527]; nucleic acid binding [GO:0003676],mediator complex [GO:0016592]; exonuclease activity [GO:0004527]; RNA binding [GO:0003723]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; miRNA catabolic process [GO:0010587],nucleic acid binding [GO:0003676] locus:2083153;,locus:2169717;,locus:2155563;,locus:2083163; AT3G50090,AT5G05540,AT5G67240,AT3G50100 small RNA degrading nuclease Os04g0650600 protein (cDNA clone:J023036M17, full insert sequence) Q0J9I1 Q0J9I1_ORYSJ Os04g0650600 Os04g0650600 OsJ_16430 OSNPB_040650600 ENOG411DTSQ UVR3 O48652 UVR3_ARATH (6-4)DNA photolyase (EC 4.1.99.13) (Protein UV repair defective 3) Sensitive to UV light-K. Yamamoto-1998 FUNCTION: Involved in repair of UV radiation-induced DNA damage. Catalyzes the photoreactivation of pyrimidine [6-4] pyrimidone photoproduct (6-4 products). Binds specifically to DNA containing 6-4 products and repairs these lesions in a visible light-dependent manner. Not required for repair of cyclobutane pyrimidine dimer (CPD). {ECO:0000269|PubMed:17164245, ECO:0000269|PubMed:9421527}. ARA:GQT-2758-MONOMER;MetaCyc:MONOMER-15021; 4.1.99.13; 4.1.99.13 63790 (6-4)DNA photolyase (EC 4.1.99.13) (Protein UV repair defective 3) DNA (6-4) photolyase activity [GO:0003914]; DNA binding [GO:0003677]; nucleotide binding [GO:0000166]; DNA repair [GO:0006281]; response to UV [GO:0009411] DEVELOPMENTAL STAGE: Expressed at all developmental stages. {ECO:0000269|PubMed:11971912}. TISSUE SPECIFICITY: Expressed in siliques, flowers and leaves. Not detected in roots. {ECO:0000269|PubMed:11971912}. locus:2093217; AT3G15620 DNA (6-4) photolyase activity (6-4)DNA photolyase (EC 4.1.99.13) Q0E2Y1 UVR3_ORYSJ UVR3 Os02g0204400 LOC_Os02g10990 OSJNBb0056C19.3 P0544H11.19 FUNCTION: Involved in repair of UV radiation-induced DNA damage. Catalyzes the photoreactivation of pyrimidine [6-4] pyrimidone photoproduct (6-4 products) (By similarity). {ECO:0000250}. ENOG411DTSP A0A1P8B4H7 A0A1P8B4H7_ARATH ERD (Early-responsive to dehydration stress) family protein 69868 ERD (Early-responsive to dehydration stress) family protein integral component of membrane [GO:0016021] early-responsive to dehydration NA NA NA NA NA NA NA ENOG411DTSS RIBA1,RIBA2 P47924,Q6NLQ7 RIBA1_ARATH,RIBA2_ARATH Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic (AtRIBA1) [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)],Monofunctional riboflavin biosynthesis protein RIBA 2, chloroplastic [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12); Inactive GTP cyclohydrolase-2 (GTP cyclohydrolase II)] DISRUPTION PHENOTYPE: No visible phenotype when heterozygous. Bleached phenotype and no viable seeds produced when homozygous. {ECO:0000269|PubMed:22081402}. Increased protochlorophyllide accumulation under etiolated growth conditions. When etiolated rfd1 mutants were transferred to light the overaccumulated chlorophyll precursor caused photooxidative damage and the respective seedlings subsequently died. When grown in constant light or dark–light cycles the mutant showed completely white cotyledons. True leaves were similarly bleached under normal light conditions although growth under dim light (5–20 mM photons m–2 s–1) results in a slight greening. On sucrose-supplemented media rfd1 developed Fluorescent phenotype associated with a lack of transcript initiation from the AtRibA1 promoter FUNCTION: Involved in riboflavin biosynthesis. Catalyzes both the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate and the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate. RIBA2 and RIBA3 together are not able to complement the loss of function of RIBA1. {ECO:0000269|PubMed:22081402, ECO:0000269|PubMed:23203051}.,FUNCTION: Involved in riboflavin biosynthesis. Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. RIBA2 and RIBA3 together are not able to complement the loss of function of RIBA1. {ECO:0000269|PubMed:22081402, ECO:0000269|PubMed:23203051}. PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.; PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.,PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1. ARA:AT5G64300-MONOMER;MetaCyc:AT5G64300-MONOMER;,ARA:AT2G22450-MONOMER; 4.1.99.12; 4.1.99.12; 3.5.4.25,4.1.99.12 59056,52200 Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic (AtRIBA1) [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)],Monofunctional riboflavin biosynthesis protein RIBA 2, chloroplastic [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12); Inactive GTP cyclohydrolase-2 (GTP cyclohydrolase II)] chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; membrane [GO:0016020]; 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [GO:0008686]; GTP binding [GO:0005525]; GTP cyclohydrolase II activity [GO:0003935]; metal ion binding [GO:0046872]; riboflavin biosynthetic process [GO:0009231],chloroplast [GO:0009507]; 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [GO:0008686]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; metal ion binding [GO:0046872]; riboflavin biosynthetic process [GO:0009231] TISSUE SPECIFICITY: Expressed in leaves, shoots, roots, flowers and siliques. {ECO:0000269|PubMed:23203051}. locus:2173373;,locus:2041253; AT5G64300,AT2G22450 riboflavin biosynthesis protein Probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic (OsRIBA1) [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)],Probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic (OsRIBA2) [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)],Os08g0481950 protein,Os02g0572400 protein (Fragment) Q6Z234,Q0E079,A0A0P0XGW9,A0A0P0VKQ3 RIBA1_ORYSJ,RIBA2_ORYSJ,A0A0P0XGW9_ORYSJ,A0A0P0VKQ3_ORYSJ RIBA1 Os08g0481950 LOC_Os08g37605 OJ1111_H02.5 OsJ_27700 OSJNBb0092C08.34,RIBA2 Os02g0572400 J023020F21 OsJ_07218,Os08g0481950 OSNPB_080481950,Os02g0572400 OSNPB_020572400 FUNCTION: Involved in riboflavin biosynthesis. Catalyzes both the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate and the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate (By similarity). {ECO:0000250}. ENOG411DTSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ABC transporter transmembrane region Os01g0533900 protein (Fragment),Os01g0534700 protein Q0JM60,A0A0P0V3W8,A0A0P0V3N1 Q0JM60_ORYSJ,A0A0P0V3W8_ORYSJ,A0A0P0V3N1_ORYSJ Os01g0533900 Os01g0533900 OSNPB_010533900,Os01g0533900 OSNPB_010533900,Os01g0534700 OSNPB_010534700 ENOG411DTSY Q6DBE8,F4JIW2,Q9LE60,F4HPR0 Q6DBE8_ARATH,F4JIW2_ARATH,Q9LE60_ARATH,F4HPR0_ARATH At1g53100 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase),AT3g15350/K7L4_15 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosylation enzyme-like protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 48167,47812,48541,47324 At1g53100 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Glycosyltransferase),AT3g15350/K7L4_15 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) (Glycosylation enzyme-like protein) (Glycosyltransferase),Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein integral component of membrane [GO:0016021]; acetylglucosaminyltransferase activity [GO:0008375],membrane [GO:0016020]; acetylglucosaminyltransferase activity [GO:0008375] locus:2037065;,locus:2124009;,locus:2087125; AT1G53100,AT4G27480,AT3G15350 glycosyltransferase family 14 protein Os01g0201100 protein (cDNA, clone: J100079F07, full insert sequence) B7FAK0 B7FAK0_ORYSJ Os01g0201100 OsJ_00766 OSNPB_010201100 ENOG411DTSX CHX19,CHX17,CHX18 Q9LUN4,Q9SUQ7,Q9FFR9 CHX19_ARATH,CHX17_ARATH,CHX18_ARATH Cation/H(+) antiporter 19 (Protein CATION/H+ EXCHANGER 19) (AtCHX19),Cation/H(+) antiporter 17 (Protein CATION/H+ EXCHANGER 17) (AtCHX17),Cation/H(+) antiporter 18 (Protein CATION/H+ EXCHANGER 18) (AtCHX18) DISRUPTION PHENOTYPE: Decreased K(+) content in roots. {ECO:0000269|PubMed:15341627}. Low potassium levels in roots under salt stress and potassium starvation-F. Casse-2004 FUNCTION: May operate as a cation/H(+) antiporter. {ECO:0000250}.,FUNCTION: Operates as a K(+)/H(+) antiporter that controls K(+) acquisition and homeostasis. {ECO:0000269|PubMed:15341627, ECO:0000269|PubMed:17133624}. MISCELLANEOUS: Could complement the kha1 deletion phenotypes in S.cerevisiae. 86915,89166,87383 Cation/H(+) antiporter 19 (Protein CATION/H+ EXCHANGER 19) (AtCHX19),Cation/H(+) antiporter 17 (Protein CATION/H+ EXCHANGER 17) (AtCHX17),Cation/H(+) antiporter 18 (Protein CATION/H+ EXCHANGER 18) (AtCHX18) integral component of membrane [GO:0016021]; late endosome [GO:0005770]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; regulation of pH [GO:0006885],integral component of membrane [GO:0016021]; late endosome [GO:0005770]; solute:proton antiporter activity [GO:0015299]; monovalent inorganic cation transport [GO:0015672]; potassium ion transport [GO:0006813]; protein targeting to vacuole [GO:0006623]; regulation of pH [GO:0006885] TISSUE SPECIFICITY: Expressed in the whole plant but preferentially in pollen. {ECO:0000269|PubMed:15347787}.,TISSUE SPECIFICITY: Predominantly expressed in epidermal and cortical cells of mature roots but also barely detected in leaves. {ECO:0000269|PubMed:15347787}.,TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:15347787}. locus:2090462;,locus:2128484;,locus:2160457; AT3G17630,AT4G23700,AT5G41610 Cation H( ) antiporter Os05g0276100 protein (Putative sodium/hydrogen exchanger) (cDNA clone:J023007H06, full insert sequence) Q6ATD0 Q6ATD0_ORYSJ Os05g0276100 Os05g0276100 OsJ_17882 OSJNBa0018H09.16 OSNPB_050276100 ENOG411DTSZ SLK1,SLK3,SLK2 Q0WVM7,F4JT98,Q94BP0 SLK1_ARATH,SLK3_ARATH,SLK2_ARATH Probable transcriptional regulator SLK1 (AtSLK1) (Protein SEUSS-like 1),Probable transcriptional regulator SLK3 (AtSLK3) (Protein SEUSS-like 3),Probable transcriptional regulator SLK2 (AtSLK2) (Protein SEUSS-like 2) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants seu and slk1 are short in stature, sterile and display strong disruptions of floral development and high frequency of female gametophyte disruption (PubMed:20007451). Enhanced tolerance to salt and osmotic stress conditions (PubMed:24564815). {ECO:0000269|PubMed:20007451, ECO:0000269|PubMed:24564815}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:20007451}.,DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but the double mutants seu and slk2 show severe embryonic and seedling defects characterized by a loss of all structures derived from the shoot apical meristem (SAM) (PubMed:20007451). Enhanced tolerance to salt and osmotic stress conditions (PubMed:24564815). {ECO:0000269|PubMed:20007451, ECO:0000269|PubMed:24564815}. FUNCTION: Probable transcription regulator that functions in the development of the carpel margin meristem similarly to SEUSS (SEU). In association with SEU, supports organ development from meristematic regions by facilitating auxin response and thus organ initiation, and by sustaining meristematic potential through the maintenance of PHABULOSA expression (PubMed:20007451). DNA-binding adapter subunit of the SEU-SLK1 transcriptional corepressor of abiotic stress (e.g. salt and osmotic stress) response genes (PubMed:24564815). {ECO:0000269|PubMed:20007451, ECO:0000269|PubMed:24564815}.,FUNCTION: Probable transcription regulator that functions in the development of the carpel margin meristem similarly to SEUSS (SEU). In association with SEU, supports organ development from meristematic regions by facilitating auxin response and thus organ initiation, and by sustaining meristematic potential through the maintenance of PHABULOSA expression (By similarity). {ECO:0000250, ECO:0000269|PubMed:20007451}.,FUNCTION: Probable transcription regulator that functions in the development of the carpel margin meristem similarly to SEUSS (SEU). In association with SEU, supports organ development from meristematic regions by facilitating auxin response and thus organ initiation, and by sustaining meristematic potential through the maintenance of PHABULOSA expression (PubMed:20007451). DNA-binding adapter subunit of the SEU-SLK2 transcriptional corepressor of abiotic stress (e.g. salt and osmotic stress) response genes (PubMed:24564815). {ECO:0000269|PubMed:20007451, ECO:0000269|PubMed:24564815}. 83314,77011,90548 Probable transcriptional regulator SLK1 (AtSLK1) (Protein SEUSS-like 1),Probable transcriptional regulator SLK3 (AtSLK3) (Protein SEUSS-like 3),Probable transcriptional regulator SLK2 (AtSLK2) (Protein SEUSS-like 2) nucleus [GO:0005634]; cell differentiation [GO:0030154]; embryo development ending in seed dormancy [GO:0009793]; gynoecium development [GO:0048467]; negative regulation of response to salt stress [GO:1901001]; plant ovule development [GO:0048481]; regulation of response to osmotic stress [GO:0047484]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; cell differentiation [GO:0030154]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in young flower meristems, ovules and the carpel margin meristem. {ECO:0000269|PubMed:20007451}. locus:2131804;,locus:504955415;,locus:2174028; AT4G25520,AT4G25515,AT5G62090 NA Os06g0126000 protein (Fragment) A0A0N7KLG1,A0A0P0WRR1,A0A0P0WRR4,A0A0P0WRS6 A0A0N7KLG1_ORYSJ,A0A0P0WRR1_ORYSJ,A0A0P0WRR4_ORYSJ,A0A0P0WRS6_ORYSJ Os06g0126000 OSNPB_060126000 ENOG411E863 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0417200 protein,Os10g0417300 protein,Expressed protein (Os03g0734500 protein) (cDNA clone:002-135-G06, full insert sequence) Q7XEL5,Q7XEL4,Q6AVT8 Q7XEL5_ORYSJ,Q7XEL4_ORYSJ,Q6AVT8_ORYSJ Os10g0417200 LOC_Os10g28160 OSNPB_100417200,Os10g0417300 LOC_Os10g28170 OSNPB_100417300,OSJNBa0027J18.13 LOC_Os03g52410 Os03g0734500 OSNPB_030734500 ENOG411E4JY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA P21-Rho-binding domain Os06g0681300 protein (cDNA clone:002-174-C05, full insert sequence) Q653X9 Q653X9_ORYSJ Os06g0681300 OsJ_22382 OSNPB_060681300 P0547F09.14 ENOG411E4JZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF2870) Os05g0120800 protein (cDNA clone:J013087A14, full insert sequence) B7ECR1 B7ECR1_ORYSJ Os05g0120800 OSNPB_050120800 ENOG411E4JU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0531300 protein (Zinc knuckle family protein, expressed) (cDNA clone:001-201-H12, full insert sequence) (cDNA clone:001-205-H10, full insert sequence) Q2R394 Q2R394_ORYSJ LOC_Os11g32720 Os11g0531300 OSNPB_110531300 ENOG411E4JT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0421000 protein) (cDNA clone:J033060C22, full insert sequence) Q6ATM9 Q6ATM9_ORYSJ OSJNBb0021K20.13 LOC_Os03g30740 Os03g0421000 OSNPB_030421000 ENOG411E4JW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411E4JV Q9SJG7 Q9SJG7_ARATH At2g42900 (Plant basic secretory protein (BSP) family protein) (Uncharacterized protein At2g42900) 31203 At2g42900 (Plant basic secretory protein (BSP) family protein) (Uncharacterized protein At2g42900) locus:2045600; AT2G42900 Peptidase of plants and bacteria Os05g0582000 protein Q6L5D8 Q6L5D8_ORYSJ Os05g0582000 Os05g0582000 OJ1651_G11.7 OSNPB_050582000 ENOG411E4JQ Q9ZUW8 Q9ZUW8_ARATH Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g27660) 76564 Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g27660) cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791] locus:2041996; AT2G27660 ZnF_ZZ NA NA NA NA NA NA NA ENOG411E4JP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Dehydration-responsive element-binding protein 2D (OsDREB2D) Q65WX1 DRE2D_ORYSJ DREB2D ERF43 Os05g0473300 LOC_Os05g39590 OsJ_18893 P0486C01.4 FUNCTION: Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. ENOG411E4JS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: centrosomal protein 104kDa NA NA NA NA NA NA NA ENOG411E4JR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os05g0468900 protein (cDNA, clone: J090078K01, full insert sequence) Q6I5R4 Q6I5R4_ORYSJ Os05g0468900 OJ1058_C01.11 OSNPB_050468900 ENOG411E4JM MBD4,MBD3,T20O10_120 Q9LYB9,Q4PSK1,Q9LYC0,B3H5Y2 MBD4_ARATH,MBD3_ARATH,Q9LYC0_ARATH,B3H5Y2_ARATH Methyl-CpG-binding domain-containing protein 4 (AtMBD4) (MBD04) (Methyl-CpG-binding protein MBD4),Methyl-CpG-binding domain-containing protein 3 (AtMBD3) (MBD03) (Methyl-CpG-binding protein MBD3),Uncharacterized protein T20O10_120,Uncharacterized protein FUNCTION: Transcriptional regulator that binds CpG, CpNpN and CpNpG (N is A, T, or C) islands in promoters regardless the DNA methylation status. Plays probably a role in gene silencing. {ECO:0000269|PubMed:14605234}.,FUNCTION: Probable transcriptional regulator. {ECO:0000250}. 21159,19103,22927,20607 Methyl-CpG-binding domain-containing protein 4 (AtMBD4) (MBD04) (Methyl-CpG-binding protein MBD4),Methyl-CpG-binding domain-containing protein 3 (AtMBD3) (MBD03) (Methyl-CpG-binding protein MBD3),Uncharacterized protein T20O10_120,Uncharacterized protein nucleus [GO:0005634]; methyl-CpG binding [GO:0008327]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; metal ion binding [GO:0046872]; methyl-CpG binding [GO:0008327]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in rosette leaves, buds, flowers, stems, mature seeds and roots. {ECO:0000269|PubMed:12954765, ECO:0000269|PubMed:15010609}. locus:2099187;,locus:505006418;,locus:2099167; AT3G63030,AT4G00416,AT3G63020 CW-type Zinc Finger NA NA NA NA NA NA NA ENOG411E4JN Q56XE4 RU1C_ARATH U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C) FUNCTION: Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. {ECO:0000255|HAMAP-Rule:MF_03153}. R-ATH-72163; 22399 U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C) commitment complex [GO:0000243]; prespliceosome [GO:0071010]; U1 snRNP [GO:0005685]; pre-mRNA 5'-splice site binding [GO:0030627]; zinc ion binding [GO:0008270]; mRNA 5'-splice site recognition [GO:0000395]; spliceosomal snRNP assembly [GO:0000387] locus:2125432; AT4G03120 Component of the U1 snRNP which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region (By similarity) U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C) Q6ETX3 Q6ETX3_ORYSJ Os02g0266100 Os02g0266100 OsJ_06175 OSNPB_020266100 P0006C08.31 FUNCTION: Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. {ECO:0000256|HAMAP-Rule:MF_03153}. ENOG411E4JI FLX F4IMQ0,A0A1P8B1N9,A0A1P8B1P9,A0A1P8B1P6 FLX_ARATH,A0A1P8B1N9_ARATH,A0A1P8B1P9_ARATH,A0A1P8B1P6_ARATH Protein FLC EXPRESSOR (AtFLX) (Protein SUPPRESSOR OF FRI 5),Protein FLC EXPRESSOR DISRUPTION PHENOTYPE: Early flowering. Decreased level of H3K4me3 and histone H3 and H4 acetylation in the region spanning the transcription-translation start site of FLC, but not of UFC or DFC. {ECO:0000269|PubMed:18156133}. FUNCTION: Transactivator required for FRIGIDA-mediated activation of FLC and for the expression of the repressors of flowering AGL27/MAF1 and AGL31/MAF2. Does not alter expression of known activators of FLC expression. Not required for the photoperiod response or for the vernalization response. Not redundant with FLXL4. {ECO:0000269|PubMed:18156133, ECO:0000269|PubMed:21282526, ECO:0000269|PubMed:23864009}. 32086,20119,30063,32657 Protein FLC EXPRESSOR (AtFLX) (Protein SUPPRESSOR OF FRI 5),Protein FLC EXPRESSOR cytoplasm [GO:0005737]; nucleus [GO:0005634]; cell differentiation [GO:0030154]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots and leaves. Expressed in shoot and root apical meristems and vascular tissues. {ECO:0000269|PubMed:18156133, ECO:0000269|PubMed:21282526}. locus:2060848; AT2G30120 NA Os03g0818000 protein A0A0P0W524 A0A0P0W524_ORYSJ Os03g0818000 OSNPB_030818000 ENOG411E4JH NF-YC11 Q9LHG0 Q9LHG0_ARATH At3g12480/MQC3.32 (Nuclear factor Y, subunit C11) 32292 At3g12480/MQC3.32 (Nuclear factor Y, subunit C11) cytosol [GO:0005829]; nucleus [GO:0005634]; protein heterodimerization activity [GO:0046982]; transcription factor activity, sequence-specific DNA binding [GO:0003700] locus:2101212; AT3G12480 Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411E4JK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Harpin-induced protein 1 containing protein (Os03g0836400 protein) (Putative harpin inducing protein) (cDNA, clone: J100086B18, full insert sequence) Q75LK0 Q75LK0_ORYSJ LOC_Os03g62020 Os03g0836400 OsJ_13274 OSJNBa0096I06.5 OSNPB_030836400 ENOG411E4JJ AHP5 Q8L9T7,A0A1P8AWM0 AHP5_ARATH,A0A1P8AWM0_ARATH Histidine-containing phosphotransfer protein 5,Histidine-containing phosphotransfer factor 5 FUNCTION: Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay. {ECO:0000269|PubMed:11193423, ECO:0000269|PubMed:12068096, ECO:0000269|PubMed:14981318}. 17925,18139 Histidine-containing phosphotransfer protein 5,Histidine-containing phosphotransfer factor 5 cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; histidine phosphotransfer kinase activity [GO:0009927]; protein histidine kinase binding [GO:0043424]; cytokinin-activated signaling pathway [GO:0009736]; phosphorelay signal transduction system [GO:0000160],intracellular [GO:0005622]; signal transducer activity [GO:0004871]; phosphorelay signal transduction system [GO:0000160] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:14981318}. locus:2020868; AT1G03430 phosphotransfer NA NA NA NA NA NA NA ENOG411E4JE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os12g0454600 protein (Plastocyanin-like domain containing protein, expressed) Q2QRP3 Q2QRP3_ORYSJ Os12g0454600 LOC_Os12g26880 OSNPB_120454600 ENOG411E4JD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) DNA-directed RNA polymerase subunit Q8GSD5 Q8GSD5_ORYSJ P0616D06.132 B1056G08.105 Os07g0615800 OSNPB_070615800 FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. {ECO:0000256|PIRNR:PIRNR005586}. ENOG411E4JG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING-H2 finger protein Os05g0360400 protein (cDNA clone:001-206-E07, full insert sequence),Os05g0359833 protein,Os04g0453950 protein (Fragment) Q5KQA8,A0A0P0WLC0,A0A0N7KJ57 Q5KQA8_ORYSJ,A0A0P0WLC0_ORYSJ,A0A0N7KJ57_ORYSJ Os05g0360400 Os05g0360400 OsJ_18224 OSJNOa0153K02.6 OSNPB_050360400,Os05g0359833 OSNPB_050359833,Os04g0453950 OSNPB_040453950 ENOG411E4JF A0A1P8AT80,F4IE21 A0A1P8AT80_ARATH,F4IE21_ARATH Cyclin-dependent kinase, putative (DUF581) 25380,23866 Cyclin-dependent kinase, putative (DUF581) kinase activity [GO:0016301] locus:2202195; AT1G19200 Protein of unknown function (DUF581) Os02g0174800 protein (cDNA clone:J023143O11, full insert sequence) Q6H502 Q6H502_ORYSJ Os02g0174800 Os02g0174800 OJ1077_E05.3 OsJ_05578 OSJNBa0073A21.29 OSNPB_020174800 ENOG411E4JA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutaredoxin NA NA NA NA NA NA NA ENOG411E4JC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E4JB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF966) Os01g0975000 protein Q0JFK4 Q0JFK4_ORYSJ Os01g0975000 Os01g0975000 OSNPB_010975000 ENOG411E4J9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E4J8 RPL28C,RPL28A Q9M0E2,O82204 RL282_ARATH,RL281_ARATH 60S ribosomal protein L28-2,60S ribosomal protein L28-1 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 15911,15895 60S ribosomal protein L28-2,60S ribosomal protein L28-1 cytosolic large ribosomal subunit [GO:0022625]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; translation [GO:0006412],cell wall [GO:0005618]; chloroplast [GO:0009507]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:2118289;,locus:2052010; AT4G29410,AT2G19730 ribosomal protein NA NA NA NA NA NA NA ENOG411E4J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin Os05g0325200 protein (cDNA, clone: J090038J19, full insert sequence),Os07g0231500 protein (cDNA clone:002-188-B12, full insert sequence),Os05g0326400 protein,Os05g0327000 protein (Fragment) Q0DJ56,Q7EY29,Q5W692,A0A0P0WKS9 Q0DJ56_ORYSJ,Q7EY29_ORYSJ,Q5W692_ORYSJ,A0A0P0WKS9_ORYSJ Os05g0325200 Os05g0325200 OsJ_18074 OSNPB_050325200,Os07g0231500 OsJ_23619 OSJNBa0086N05.121 OSNPB_070231500,Os05g0326400 Os05g0326400 OsJ_18080 OSJNBa0076A09.3 OSNPB_050326400 P0018A03.20,Os05g0327000 OSNPB_050327000 ENOG411E4J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os01g0569200 protein,Os09g0128900 protein,Os12g0167401 protein A0A0P0V482,A0A0P0XJT6,A0A0P0Y790 A0A0P0V482_ORYSJ,A0A0P0XJT6_ORYSJ,A0A0P0Y790_ORYSJ Os01g0569200 OSNPB_010569200,Os09g0128900 OSNPB_090128900,Os12g0167401 OSNPB_120167401 ENOG411E4J6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: EF hand family protein NA NA NA NA NA NA NA ENOG411E4J1 CRC Q8L925 CRC_ARATH Protein CRABS CLAW Development of ectopic ovules with random distribution: 1 to 10 per gynoecium.,Grow more slowly than wild type flower 10-14 days later have reduced organ sizes exhibit slight epinasty of their leaves and flowers and display reduced apical dominance.,In double mutant carpels two rows of primordia arise extending along the length of the ovary most of which subsequently develop into ovules (mostly morphologically abnormal).,Ectopic adaxial tissues are restricted to the medial domain of the carpels normally occupied by the abaxial replum. Formation of external ovule-bearing placentae.,Short siliques. Indeterminate floral mersitem - carpels enclose extra floral organs. Abnormal carpel development-D. Smyth-1999 FUNCTION: Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}. 19722 Protein CRABS CLAW nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel development [GO:0048440]; cell differentiation [GO:0030154]; floral meristem determinacy [GO:0010582]; nectary development [GO:0010254]; polarity specification of adaxial/abaxial axis [GO:0009944]; regulation of transcription, DNA-templated [GO:0006355]; style development [GO:0048479]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: In carpels, expression starts when the gynoecial primordia becomes distinct. First expressed in the lateral region of each carpel. Later resolves into two distinct domains, epidermal and internal. In epidermal tissues, mostly localized on the outer surface, successively from the base to the tip of the gynoecium and finally confined to the valve region before disappearing during last flowering stages. In internal tissues, first confined to four discrete zones adjacent to the future placental tissue occupying the full length of the elongating cylinder, declining from the apical regions and disappearing after the ovule primordia arise. Before nectaries initiation, expression occupies a ring of receptacle cells between the stamen and sepal primordia, from where nectaries will develop. Strongly expressed in nectaries until latest flowering stages. {ECO:0000269|PubMed:10225998}. TISSUE SPECIFICITY: Restricted to flowers, mostly in carpels and nectaries. Expressed at low levels in sepal primordia (buds), sepal receptacle and developing petal. Not detected in placental tissues, septum, stigma and ovules. {ECO:0000269|PubMed:10225998}. locus:2026418; AT1G69180 protein DROOPING LEAF Protein DROOPING LEAF (Protein CRABS CLAW homolog) (Protein CRC homolog),Drooping leaf protein, putative, expressed (Os03g0215200 protein) Q76EJ0,Q10Q01 YABDL_ORYSJ,Q10Q01_ORYSJ DL Os03g0215200 LOC_Os03g11600 OsJ_009541,Os03g0215200 LOC_Os03g11600 OsJ_09912 OSNPB_030215200 FUNCTION: Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. ENOG411E4J0 CAR9 Q9S7J9,A0A1P8AW00 CAR9_ARATH,A0A1P8AW00_ARATH Protein C2-DOMAIN ABA-RELATED 9,Calcium-dependent lipid-binding (CaLB domain) family protein DISRUPTION PHENOTYPE: When associated with disruption in CAR1, CAR4 and CAR5 genes, reduced sensitivity to abscisic acid (ABA) during seedling establishment and root growth regulation. {ECO:0000269|PubMed:25465408}. FUNCTION: Stimulates the GTPase/ATPase activities of Obg-like ATPases (By similarity). Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (PubMed:25465408). {ECO:0000250|UniProtKB:Q9LVH4, ECO:0000269|PubMed:25465408}. 21054,16985 Protein C2-DOMAIN ABA-RELATED 9,Calcium-dependent lipid-binding (CaLB domain) family protein nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; phospholipid binding [GO:0005543]; abscisic acid-activated signaling pathway [GO:0009738]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of GTPase activity [GO:0043547] locus:2013905; AT1G70790 ADP-ribosylation factor GTPase-activating protein AGD13-like NA NA NA NA NA NA NA ENOG411E4J3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os01g0977300 protein (Putative tuber-specific and sucrose-responsive element binding factor) (cDNA clone:002-169-B11, full insert sequence) Q84SF0 Q84SF0_ORYSJ Os01g0977300 Os01g0977300 OsJ_04971 OSNPB_010977300 P0020E09.20 ENOG411E4J2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal peptide peptidase NA NA NA NA NA NA NA ENOG411E86I Q0IGM8 Q0IGM8_ARATH At1g02070 (Zinc ion-binding protein) 14729 At1g02070 (Zinc ion-binding protein) locus:2205578; AT1G02070 NA NA NA NA NA NA NA NA ENOG411E0P6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MAP kinase activity Mitogen-activated protein kinase 12 (MAP kinase 12) (EC 2.7.11.24) (Blast- and wound-induced MAP kinase 1) (MAP kinase 1) (OsBWMK1) (OsMAPK1),Mitogen-activated protein kinase 13 (MAP kinase 13) (EC 2.7.11.24) (Benzothiadiazole-induced MAP kinase 2) (MAP kinase 2) (OsBIMK2) (OsBWMK2) (OsMAPK2) (OsMPK17-2) (Wound- and blast-induced MAPK 2),Mitogen-activated protein kinase (EC 2.7.11.24) (Fragment),Os06g0708000 protein (Fragment),Mitogen-activated protein kinase (EC 2.7.11.24) Q5Z9J0,Q0E459,A0A0P0X111,A0A0P0X0N8,A0A0P0VEF7 MPK12_ORYSJ,MPK13_ORYSJ,A0A0P0X111_ORYSJ,A0A0P0X0N8_ORYSJ,A0A0P0VEF7_ORYSJ MPK12 BWMK1 MAPK1 Os06g0708000 LOC_Os06g49430 P0621D05.40-1 P0621D05.40-2,MPK13 BIMK2 BWMK2 MAPK2 MPK17-2 Os02g0135200 LOC_Os02g04230 P0585B01.25,Os06g0708000 OSNPB_060708000,Os02g0135200 OSNPB_020135200 FUNCTION: May be involved in defense signaling pathway. Phosphorylates EREBP1 transcriptional activator in vitro. Enhances DNA-binding activity of EREBP1 to the GCC box element of pathogenesis-related (PR) gene promoters. {ECO:0000269|PubMed:12913152}. ENOG411E0P5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3595) Os01g0388500 protein A0A0P0V2V4 A0A0P0V2V4_ORYSJ Os01g0388500 OSNPB_010388500 ENOG411E0P2 MCD7.13 Q9FM94,A0A1P8BBG7 FBD21_ARATH,A0A1P8BBG7_ARATH FBD-associated F-box protein At5g56370,F-box/RNI-like/FBD-like domains-containing protein 48249,36676 FBD-associated F-box protein At5g56370,F-box/RNI-like/FBD-like domains-containing protein locus:2161088; AT5G56370 F-box domain NA NA NA NA NA NA NA ENOG411EGFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0324000 protein,Os02g0578000 protein (Fragment),Os04g0314201 protein Q0JE54,A0A0P0VL03,A0A0N7KIT9 Q0JE54_ORYSJ,A0A0P0VL03_ORYSJ,A0A0N7KIT9_ORYSJ Os04g0324000 Os04g0324000 OSNPB_040324000,Os02g0578000 OSNPB_020578000,Os04g0314201 OSNPB_040314201 ENOG411E0PF GGR Q39108 GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic FUNCTION: Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase small subunit. The small subunit alone is inactive in vitro while the large subunit GGPPS1 catalyzes mainly the production of geranygeranyl-diphosphate in vitro. Upon association of the two subunits, the product profile changes and the production of gerany-diphosphate is strongly increased. {ECO:0000269|PubMed:19482937}. 35189 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; thylakoid membrane [GO:0042651]; metal ion binding [GO:0046872]; prenyltransferase activity [GO:0004659]; monoterpene biosynthetic process [GO:0043693] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:10759500}. locus:2121149; AT4G38460 geranylgeranyl pyrophosphate Os02g0668100 protein (Putative geranylgeranyl diphosphate synthase) (cDNA clone:001-204-C07, full insert sequence) (cDNA clone:002-182-E03, full insert sequence) (cDNA clone:J023091L04, full insert sequence),Os02g0668100 protein (Fragment) Q6ET88,A0A0P0VMR6 Q6ET88_ORYSJ,A0A0P0VMR6_ORYSJ Os02g0668100 OJ1725_H08.13 OSNPB_020668100,Os02g0668100 OSNPB_020668100 ENOG411E0PE T1B9.17 Q52K85,Q9SFU7,A0A1I9LTS5 Q52K85_ARATH,Q9SFU7_ARATH,A0A1I9LTS5_ARATH At5g48680 (Sterile alpha motif (SAM) domain-containing protein) (Uncharacterized protein At5g48680),At3g07170/T1B9_17 (Sterile alpha motif (SAM) domain-containing protein) (T1B9.17 protein),Sterile alpha motif (SAM) domain-containing protein 23301,22682,20735 At5g48680 (Sterile alpha motif (SAM) domain-containing protein) (Uncharacterized protein At5g48680),At3g07170/T1B9_17 (Sterile alpha motif (SAM) domain-containing protein) (T1B9.17 protein),Sterile alpha motif (SAM) domain-containing protein locus:2152521;,locus:2098550; AT5G48680,AT3G07170 Sterile alpha motif (SAM) domain-containing protein NA NA NA NA NA NA NA ENOG411E0PC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ataxia telangiectasia mutated NA NA NA NA NA NA NA ENOG411E0PB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: ZnF_C2H2 OSJNBa0060P14.11 protein (OSJNBb0048E02.2 protein) (Os04g0464600 protein) Q7X666 Q7X666_ORYSJ Os04g0464600 Os04g0464600 OsJ_15091 OSJNBa0060P14.11 OSJNBb0048E02.2 OSNPB_040464600 ENOG411E0PM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Esterase PHB depolymerase Os06g0214300 protein (Putative PrMC3) (cDNA clone:002-139-B08, full insert sequence) Q69Y21 Q69Y21_ORYSJ Os06g0214300 Os06g0214300 OSNPB_060214300 P0537F07.9 P0701E03.48 ENOG411E0PK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0547100 protein,Os07g0547200 protein,Os07g0546800 protein A0A0P0X7M3,A0A0P0X7N0,A0A0P0X734 A0A0P0X7M3_ORYSJ,A0A0P0X7N0_ORYSJ,A0A0P0X734_ORYSJ Os07g0547100 OSNPB_070547100,Os07g0547200 OSNPB_070547200,Os07g0546800 OSNPB_070546800 ENOG411E0PI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA potassium:sodium symporter activity Potassium transporter 19 (OsHAK19),Potassium transporter 20 (OsHAK20) Q6H4M2,Q6H4L9 HAK19_ORYSJ,HAK20_ORYSJ HAK19 Os02g0518600 LOC_Os02g31910 P0461D06.12,HAK20 Os02g0519100 LOC_Os02g31940 OsJ_06926 P0461D06.18 FUNCTION: High-affinity potassium transporter. {ECO:0000250}. ENOG411EBU2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3411) NA NA NA NA NA NA NA ENOG411DZI9 ABA4 Q8LFP9,A0A1P8AQ81 ABA4_ARATH,A0A1P8AQ81_ARATH Protein ABA DEFICIENT 4, chloroplastic,Abscisic acid (Aba)-deficient 4 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants accumulate violaxanthin and completely lack neoxanthin. {ECO:0000269|PubMed:17351115, ECO:0000269|PubMed:17470058}. Neoxanthin was absent in the mutant genotype while an increase in Violaxanthin content was recorded. aba4-1 leaf discs were clearly more sensitive to light stress than the wild type (90% of chlorophyll was bleached in aba4-1 versus 35% in the wild type) aba4-1 has a reduced steady state ABA content (45% of wild-type content),aba4-1 npq1 underwent a significant reduction in leaf chlorophyll content and a strong accumulation of the antioxidant molecule tocopherol with respect to npq1 aba4-1 npq1 was photoinhibited further and had only recovered to similar levels as the other genotypes after 6 d decrease of the chlorophyll/carotenoid ratio and an increase in tocopherol content Low ABA levels; Germination resistant to paclobutrazol (inhibitor of GA synthesis)-A. Marion-Poll-2007 FUNCTION: Required for neoxanthin biosynthesis, an intermediary step in abscisic acid (ABA) biosynthesis. Probably not involved directly in the enzymatic conversion of violaxanthin to neoxanthin. Cannot convert violaxanthin to neoxanthin in vitro. Required for ABA biosynthesis in response to drought stress (PubMed:17470058). Required for neoxanthin biosynthesis which is involved in photoprotection of photosystem II (PSII). Neoxanthin acts as an antioxidant within the photosystem PSII supercomplex (PubMed:17351115). {ECO:0000269|PubMed:17351115, ECO:0000269|PubMed:17470058}. MISCELLANEOUS: Plants over-expressing ABA4 have increased levels of trans-neoxanthin. {ECO:0000269|PubMed:17470058}. ARA:AT1G67080-MONOMER; 24624,18405 Protein ABA DEFICIENT 4, chloroplastic,Abscisic acid (Aba)-deficient 4 chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; abscisic acid biosynthetic process [GO:0009688]; regulation of superoxide anion generation [GO:0032928]; xanthophyll biosynthetic process [GO:0016123]; xanthophyll metabolic process [GO:0016122],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in root vasculature, root hairs, leaves, trichomes, sepals, stamens, stigma, pedicels, siliques and embryo. {ECO:0000269|PubMed:17470058}. locus:2019718; AT1G67080 NA Protein MAO HUZI 4, chloroplastic Q5ZEG0 MHZ4_ORYSJ MHZ4 Os01g0128300 LOC_Os01g03750 P0408F06.3 DISRUPTION PHENOTYPE: Mutant etiolated seedlings display reduced ethylene-response in roots and enhanced ethylene-response in coleoptiles. Mature mutant plants have increased shoot length, branches and adventitious roots at high node position on the shoot and impaired grain filling. {ECO:0000269|PubMed:25330236}. FUNCTION: Required for neoxanthin biosynthesis, an intermediary step in abscisic acid (ABA) biosynthesis. Involved in an ABA pathway that acts at or downstream of ethylene receptors and positively regulates root ethylene response. In coleoptiles the MHZ4-dependent ABA pathway acts at or upstream of EIN2 to negatively regulate coleoptile ethylene response. {ECO:0000269|PubMed:25330236}. "MISCELLANEOUS: ""Mao huzi"" means cat whiskers in Chinese. {ECO:0000303|PubMed:25330236}." ENOG411DZI8 VHA-a1 Q8RWZ7 VHAA1_ARATH V-type proton ATPase subunit a1 (V-ATPase subunit a1) (V-type proton ATPase 95 kDa subunit a isoform 1) (V-ATPase 95 kDa isoform a1) (Vacuolar H(+)-ATPase subunit a isoform 1) (Vacuolar proton pump subunit a1) (Vacuolar proton translocating ATPase 95 kDa subunit a isoform 1) DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:18441211}. FUNCTION: Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Required during cell expansion. {ECO:0000269|PubMed:18441211}. R-ATH-1222556;R-ATH-6798695;R-ATH-77387;R-ATH-917977; 93415 V-type proton ATPase subunit a1 (V-ATPase subunit a1) (V-type proton ATPase 95 kDa subunit a isoform 1) (V-ATPase 95 kDa isoform a1) (Vacuolar H(+)-ATPase subunit a isoform 1) (Vacuolar proton pump subunit a1) (Vacuolar proton translocating ATPase 95 kDa subunit a isoform 1) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plant-type vacuole [GO:0000325]; trans-Golgi network [GO:0005802]; trans-Golgi network transport vesicle membrane [GO:0012510]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuole [GO:0005773]; ATPase binding [GO:0051117]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; ATP hydrolysis coupled proton transport [GO:0015991]; ATP synthesis coupled proton transport [GO:0015986]; proton-transporting V-type ATPase complex assembly [GO:0070070]; vacuolar acidification [GO:0007035]; vacuolar proton-transporting V-type ATPase complex assembly [GO:0070072] locus:2056598; AT2G28520 proton ATPase V-type proton ATPase subunit a Q5QLD9,A0A0P0VA30,A0A0P0VA27 Q5QLD9_ORYSJ,A0A0P0VA30_ORYSJ,A0A0P0VA27_ORYSJ P0460C04.33-1 Os01g0834200 OSNPB_010834200,Os01g0834200 OSNPB_010834200 FUNCTION: Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. {ECO:0000256|RuleBase:RU361189}. ENOG411DZI1 MXK3.1 Q9LV98 Q9LV98_ARATH Beta-1,3-glucanase (O-Glycosyl hydrolases family 17 protein) ARA:AT5G64790-MONOMER; 53922 Beta-1,3-glucanase (O-Glycosyl hydrolases family 17 protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247]; carbohydrate metabolic process [GO:0005975] locus:2177624; AT5G64790 glucan endo-1-3-beta-glucosidase Os06g0590600 protein (Putative beta-1,3-glucanase),'putative beta-1,3-glucanase (Os05g0535100 protein),Os05g0531700 protein Q69X84,Q6L5J3,A0A0N7KL51 Q69X84_ORYSJ,Q6L5J3_ORYSJ,A0A0N7KL51_ORYSJ Os06g0590600 OSNPB_060590600 P0633E08.25,Os05g0535100 Os05g0535100 OJ1741_B01.1 OSNPB_050535100,Os05g0531700 OSNPB_050531700 ENOG411DZI3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA glutathione s-transferase Glutathione S-transferase, N-terminal domain containing protein, expressed (Os10g0530600 protein) (Putative glutathione S-transferase) (cDNA clone:002-188-G01, full insert sequence),Glutathione S-transferase GSTU6, putative, expressed (Os10g0530400 protein) (Putative glutathione S-transferase) (cDNA clone:001-205-A09, full insert sequence) (cDNA clone:006-305-F07, full insert sequence) (cDNA clone:J013101K13, full insert sequence),Os10g0530500 protein Q8LMI9,Q8S718,A0A0P0XX30 Q8LMI9_ORYSJ,Q8S718_ORYSJ,A0A0P0XX30_ORYSJ LOC_Os10g38720 Os10g0530600 OsJ_32245 OSJNBb0038A07.24 OSNPB_100530600,LOC_Os10g38700 Os10g0530400 OsJ_32243 OSJNBa0034L04.2 OSJNBb0038A07.4 OSNPB_100530400,Os10g0530500 OSNPB_100530500 ENOG411DZI2 ORRM1,Organelle RRM protein 1 Q8L440,A0A1I9LPX6 ORRM1_ARATH,A0A1I9LPX6_ARATH Organelle RRM domain-containing protein 1, chloroplastic,RNA-binding (RRM/RBD/RNP motifs) family protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants exhibit severe editing defects in chloroplastic transcripts. {ECO:0000269|PubMed:23487777}. FUNCTION: Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls 62 percent of the chloroplastic editing sites. Binds RNA close to ORRM1-dependent editing sites in vitro. Binds the editing recognition trans-factors PCMP-H51/CRR28 and PCMP-H12/OTP82. {ECO:0000269|PubMed:23487777}. 41610,42122 Organelle RRM domain-containing protein 1, chloroplastic,RNA-binding (RRM/RBD/RNP motifs) family protein chloroplast [GO:0009507]; RNA binding [GO:0003723]; chloroplast mRNA modification [GO:1900871]; mRNA processing [GO:0006397]; response to cold [GO:0009409],RNA binding [GO:0003723] locus:2088756; AT3G20930 RNA recognition Organelle RRM domain-containing protein 1, chloroplastic Q6YWP9 ORRM1_ORYSJ ORRM1 Os02g0730800 LOC_Os02g49820 OSJNBa0072H09.43 P0617A09.22 FUNCTION: Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites. {ECO:0000250|UniProtKB:C0HFE5}. ENOG411DZI5 Q8L4R9,A0A1P8B0N6,F4IJD7,A0A1P8B0K9 Q8L4R9_ARATH,A0A1P8B0N6_ARATH,F4IJD7_ARATH,A0A1P8B0K9_ARATH BAT2 domain protein (Uncharacterized protein At2g15860),BAT2 domain protein 55575,50454,56903,49399 BAT2 domain protein (Uncharacterized protein At2g15860),BAT2 domain protein cytosol [GO:0005829] locus:2044601; AT2G15860 NA Os03g0737900 protein Q84R31 Q84R31_ORYSJ OSJNBb0016H12.28 Os03g0737900 OSJNBa0057G07.23 OSNPB_030737900 ENOG411DZI4 FLA10,FLA8 Q9LZX4,O22126 FLA10_ARATH,FLA8_ARATH Fasciclin-like arabinogalactan protein 10,Fasciclin-like arabinogalactan protein 8 (AtAGP8) FUNCTION: May be a cell surface adhesion protein. 43607,43075 Fasciclin-like arabinogalactan protein 10,Fasciclin-like arabinogalactan protein 8 (AtAGP8) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886],anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; apoplast [GO:0048046]; plant-type cell wall [GO:0009505]; plasma membrane [GO:0005886] TISSUE SPECIFICITY: Expressed mainly in flowers and to a lesser extend in leaves and roots. {ECO:0000269|PubMed:11006345, ECO:0000269|PubMed:14645732}. locus:2101841;,locus:2050822; AT3G60900,AT2G45470 fasciclin-like arabinogalactan protein OSJNBa0019K04.16 protein (Os04g0574200 protein) Q7XTY1 Q7XTY1_ORYSJ Os04g0574200 Os04g0574200 OsJ_15854 OSJNBa0019K04.16 OSNPB_040574200 ENOG411DZI7 A0A1P8B0S4,Q9ZUM1 A0A1P8B0S4_ARATH,Q9ZUM1_ARATH Remorin family protein,At2g02170/F5O4.6 (Expressed protein) (Remorin family protein) 40202,53952 Remorin family protein,At2g02170/F5O4.6 (Expressed protein) (Remorin family protein) plasma membrane [GO:0005886] locus:2051673; AT2G02170 Remorin family Os02g0116800 protein (cDNA clone:J033098O09, full insert sequence) Q6ZGM2 Q6ZGM2_ORYSJ Os02g0116800 Os02g0116800 OJ1442_E05.21 OsJ_05123 OSNPB_020116800 ENOG411DZI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 Os03g0134500 protein A0A0P0VSY0 A0A0P0VSY0_ORYSJ Os03g0134500 OSNPB_030134500 ENOG411DZIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 OSJNBa0089E12.1 protein (OSJNBb0040D15.15 protein) (Os04g0154000 protein),Os04g0152400 protein,OSJNBa0089E12.13 protein (Os04g0154800 protein),OSJNBa0080E14.6 protein (Os04g0156000 protein),Os04g0153200 protein,Os04g0153000 protein,Os04g0146975 protein,Os04g0146750 protein,Os04g0152000 protein,Os04g0154700 protein,Os04g0137600 protein,Os04g0141800 protein (Fragment),Os04g0139700 protein Q7XMV9,B9FDJ0,Q0JF54,Q7X717,A0A0P0W7A2,A0A0P0W732,A0A0P0W794,A0A0P0W6P5,A0A0P0W6M8,A0A0P0W6S8,A0A0P0W6X4,A0A0P0W6K4,A0A0P0W6H2 Q7XMV9_ORYSJ,B9FDJ0_ORYSJ,Q0JF54_ORYSJ,Q7X717_ORYSJ,A0A0P0W7A2_ORYSJ,A0A0P0W732_ORYSJ,A0A0P0W794_ORYSJ,A0A0P0W6P5_ORYSJ,A0A0P0W6M8_ORYSJ,A0A0P0W6S8_ORYSJ,A0A0P0W6X4_ORYSJ,A0A0P0W6K4_ORYSJ,A0A0P0W6H2_ORYSJ Os04g0154000 OsJ_13715 OSJNBa0089E12.1 OSJNBb0040D15.15 OSNPB_040154000,Os04g0152400 OsJ_13706 OSNPB_040152400,Os04g0154800 Os04g0154800 OsJ_13719 OSJNBa0089E12.13 OSNPB_040154800,OSJNBa0080E14.6 Os04g0156000 OSNPB_040156000,Os04g0153200 OSNPB_040153200,Os04g0153000 OSNPB_040153000,Os04g0146975 OSNPB_040146975,Os04g0146750 OSNPB_040146750,Os04g0152000 OSNPB_040152000,Os04g0154700 OSNPB_040154700,Os04g0137600 OSNPB_040137600,Os04g0141800 OSNPB_040141800,Os04g0139700 OSNPB_040139700 ENOG411DZIX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os12g0131500 protein,Os12g0131701 protein B9GBQ8,A0A0P0Y6T6 B9GBQ8_ORYSJ,A0A0P0Y6T6_ORYSJ Os12g0131500 OsJ_35124 OSNPB_120131500,Os12g0131701 OSNPB_120131701 ENOG411DZIZ DRB2 Q9SKN2 DRB2_ARATH Double-stranded RNA-binding protein 2 (dsRNA-binding protein 2) (AtDRB2) DISRUPTION PHENOTYPE: Flat, serrated, blue-green and ovoid leaves. {ECO:0000269|PubMed:18625233}. FUNCTION: Binds double-stranded RNA. May be involved in RNA-mediated silencing. {ECO:0000269|PubMed:15821876}. 47440 Double-stranded RNA-binding protein 2 (dsRNA-binding protein 2) (AtDRB2) cytoplasm [GO:0005737]; double-stranded RNA binding [GO:0003725]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919] locus:2057491; AT2G28380 double-stranded RNA-binding protein Double-stranded RNA-binding protein 6 (dsRNA-binding protein 5) (OsDRB5) (dsRNA-binding protein 6) Q9AV50 DRB6_ORYSJ DRB6 DRB5 Os10g0480500 LOC_Os10g33970 OsJ_31914 OSJNBa0093B11.1 FUNCTION: Binds double-stranded RNA. {ECO:0000250}. ENOG411E86Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DZIP psbA P83755 PSBA_ARATH Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) FUNCTION: Photosystem II (PSII) is a light-driven water: plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. {ECO:0000255|HAMAP-Rule:MF_01379}. MISCELLANEOUS: 2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water. {ECO:0000255|HAMAP-Rule:MF_01379}.; MISCELLANEOUS: Herbicides such as atrazine, BNT, diuron or ioxynil bind in the Q(B) binding site and block subsequent electron transfer. {ECO:0000255|HAMAP-Rule:MF_01379}. MetaCyc:ATCG00020-MONOMER; 1.10.3.9 38937 Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) chloroplast [GO:0009507]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; photosystem II [GO:0009523]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; chlorophyll binding [GO:0016168]; electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [GO:0045156]; metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491]; photosynthetic electron transport in photosystem II [GO:0009772]; protein-chromophore linkage [GO:0018298]; response to herbicide [GO:0009635] locus:504954626; ATCG00020 This is one of the two reaction center proteins of photosystem II Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein),Os04g0473150 protein (Fragment) P0C434,A0A0N7KJ79 PSBA_ORYSJ,A0A0N7KJ79_ORYSJ psbA Nip001,Os04g0473150 OSNPB_040473150 FUNCTION: Photosystem II (PSII) is a light-driven water: plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. {ECO:0000255|HAMAP-Rule:MF_01379}. MISCELLANEOUS: 2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water. {ECO:0000255|HAMAP-Rule:MF_01379}.; MISCELLANEOUS: Herbicides such as atrazine, BNT, diuron or ioxynil bind in the Q(B) binding site and block subsequent electron transfer. {ECO:0000255|HAMAP-Rule:MF_01379}. ENOG411DZIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Peroxidase (EC 1.11.1.7) Q5Z8H6,Q5Z8H7,Q5U1K0 Q5Z8H6_ORYSJ,Q5Z8H7_ORYSJ,Q5U1K0_ORYSJ Os06g0695400 Os06g0695400 OSNPB_060695400 P0550B04.44 P0622F03.19,Os06g0695300 prx92 OsJ_22483 OSNPB_060695300 P0550B04.42 P0622F03.17,prx93 Os06g0695200 OSNPB_060695200 ENOG411DZIU NFXL2 Q9FFK8 NFXL2_ARATH NF-X1-type zinc finger protein NFXL2 (AtNFXL2) (EC 6.3.2.-) (Protein EARLY BIRD) DISRUPTION PHENOTYPE: No obvious morphological alterations. Enhanced growth and survival under water or salt stress. Enhanced H(2)O(2) production. Elevated abscisic acid levels and reduced stomatal aperture. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:22073231}. FUNCTION: Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. PATHWAY: Protein modification; protein ubiquitination. 6.3.2.- 99229 NF-X1-type zinc finger protein NFXL2 (AtNFXL2) (EC 6.3.2.-) (Protein EARLY BIRD) integral component of membrane [GO:0016021]; nucleus [GO:0005634]; ligase activity [GO:0016874]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding [GO:0001078]; zinc ion binding [GO:0008270]; protein ubiquitination [GO:0016567]; regulation of hydrogen peroxide metabolic process [GO:0010310]; response to salt stress [GO:0009651]; rhythmic process [GO:0048511]; transcription from RNA polymerase II promoter [GO:0006366] TISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}. AT5G05660 NF-X1-type zinc finger protein Os01g0158900 protein (cDNA clone:J013082G02, full insert sequence),Os01g0158900 protein (Fragment) Q5ZEL8,A0A0P0UYJ2 Q5ZEL8_ORYSJ,A0A0P0UYJ2_ORYSJ Os01g0158900 Os01g0158900 OSNPB_010158900 P0041E11.9,Os01g0158900 OSNPB_010158900 ENOG411DZIV SHM3 Q94JQ3 GLYP3_ARATH Serine hydroxymethyltransferase 3, chloroplastic (AtSHMT3) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 3) (Serine methylase 3) FUNCTION: Catalyzes the interconversion of serine and glycine and directs the hydroxymethyl moiety of serine into the metabolic network of H4PteGlu(n)-bound one-carbon units. {ECO:0000269|PubMed:20518745}. PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. ARA:AT4G32520-MONOMER; R-ATH-196757;R-ATH-71262; 2.1.2.1; 2.1.2.1 57983 Serine hydroxymethyltransferase 3, chloroplastic (AtSHMT3) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 3) (Serine methylase 3) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; glycine biosynthetic process [GO:0006545]; tetrahydrofolate interconversion [GO:0035999] locus:2127806; AT4G32520 interconversion of serine and glycine (By similarity) NA NA NA NA NA NA NA ENOG411DZIH O82201 AP4S_ARATH AP-4 complex subunit sigma (AP-4 adaptor complex subunit sigma) (Adaptor-related protein complex 4 subunit sigma) (Sigma subunit of AP-4) (Sigma4-adaptin) FUNCTION: Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. {ECO:0000250}. R-ATH-432720; 16921 AP-4 complex subunit sigma (AP-4 adaptor complex subunit sigma) (Adaptor-related protein complex 4 subunit sigma) (Sigma subunit of AP-4) (Sigma4-adaptin) AP-4 adaptor complex [GO:0030124]; clathrin-coated pit [GO:0005905]; trans-Golgi network [GO:0005802]; protein transporter activity [GO:0008565] locus:2051905; AT2G19790 AP-4 complex subunit AP complex subunit sigma Q6ZKE1,Q8H8J0 Q6ZKE1_ORYSJ,Q8H8J0_ORYSJ Os08g0395300 OJ1123_G08.16 OsJ_27194 OSNPB_080395300,OSJNBa0083M08.3 LOC_Os10g22330 Os10g0368400 OsJ_31256 OSNPB_100368400 ENOG411DZIA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein VAR3 chloroplastic-like NA NA NA NA NA NA NA ENOG411DZIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Os05g0440000 protein Q0DHU3 Q0DHU3_ORYSJ Os05g0440000 Os05g0440000 OSNPB_050440000 ENOG411DZIB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) E3 ubiquitin-protein ligase Os03g0188200 (EC 2.3.2.27) (RING-H2 finger protein Os03g0188200) (RING-type E3 ubiquitin transferase Os03g0188200) Q8H7N9 ATL31_ORYSJ Os03g0188200 LOC_Os03g08920 OJ1217B09.7 FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro. {ECO:0000269|PubMed:16186120}. ENOG411DZIG RVE1 F4KGY6,A0A1P8BGA9 RVE1_ARATH,A0A1P8BGA9_ARATH Protein REVEILLE 1,Homeodomain-like superfamily protein DISRUPTION PHENOTYPE: No effect on the regulation of core clock associated genes, but shorter hypocotyl length and higher freezing tolerance. Rve1 and rve2 double mutant has no alteration in the period or phase of the clock. Rve1, rve2 and rve7 triple mutant has no alteration in the period or phase of the clock. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. FUNCTION: Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. 42981,34188 Protein REVEILLE 1,Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin biosynthetic process [GO:0009851]; auxin-activated signaling pathway [GO:0009734]; circadian rhythm [GO:0007623]; regulation of auxin biosynthetic process [GO:0010600]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2167210; AT5G17300 MYB family transcription factor NA NA NA NA NA NA NA ENOG411E0I1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MATH domain Os10g0429300 protein,Os10g0429200 protein (Speckle-type POZ protein, putative),BTB/POZ domain containing protein (Os10g0429600 protein),Os10g0429651 protein (Fragment),Os10g0424100 protein (Fragment) B9G7V2,Q7XEA8,Q7XEA4,A0A0P0XUD3,A0A0P0XUC0 B9G7V2_ORYSJ,Q7XEA8_ORYSJ,Q7XEA4_ORYSJ,A0A0P0XUD3_ORYSJ,A0A0P0XUC0_ORYSJ Os10g0429300 Os10g0429300 OsJ_30945 OSNPB_100429300,Os10g0429200 LOC_Os10g29370 OSNPB_100429200,Os10g0429600 LOC_Os10g29410 OSNPB_100429600,Os10g0429651 OSNPB_100429651,Os10g0424100 OSNPB_100424100 ENOG411E0I2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Methyl-CpG binding domain Os08g0206700 protein (cDNA clone:J023091M14, full insert sequence),Os08g0206800 protein (Fragment) Q6ZJ98,A0A0P0XD68 Q6ZJ98_ORYSJ,A0A0P0XD68_ORYSJ Os08g0206700 Os08g0206700 OJ1119_C05.23 OJ1734_E04.2 OSNPB_080206700,Os08g0206800 OSNPB_080206800 ENOG411E0I3 OPR3 Q9FUP0 OPR3_ARATH 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (AtOPR3) (OPDA-reductase 3) (Delayed dehiscence 1) [Cleaved into: 12-oxophytodienoate reductase 3, N-terminally processed] DISRUPTION PHENOTYPE: Male sterility. Fertility can be restored by exogenous jasmonate but not by 12-oxophytodienoic acid. Large petals with altered vein patterning. {ECO:0000269|PubMed:10973494, ECO:0000269|PubMed:19765234}. Male sterile-J. Browse-2000 FUNCTION: Specifically cleaves olefinic bonds in cyclic enones. Involved in the biosynthesis of jasmonic acid (JA) and perhaps in biosynthesis or metabolism of other oxylipin signaling moleclules. Required for the spatial and temporal regulation of JA levels during dehiscence of anthers, promoting the stomium degeneration program. In vitro, reduces 9S,13S-12-oxophytodienoic acid (9S,13S-OPDA) and 9R,13R-OPDA to 9S,13S-OPC-8:0 and 9R,13R-OPC-8:0, respectively. Can detoxify the explosive 2,4,6-trinitrotoluene (TNT) in vitro by catalyzing its nitroreduction to form hydroxylamino-dinitrotoluene (HADNT). {ECO:0000269|PubMed:10973494, ECO:0000269|PubMed:19605548}. PATHWAY: Lipid metabolism; oxylipin biosynthesis. ARA:GQT-1160-MONOMER;MetaCyc:AT2G06050-MONOMER; 1.3.1.42; 1.3.1.42 42691 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (AtOPR3) (OPDA-reductase 3) (Delayed dehiscence 1) [Cleaved into: 12-oxophytodienoate reductase 3, N-terminally processed] peroxisome [GO:0005777]; 12-oxophytodienoate reductase activity [GO:0016629]; FMN binding [GO:0010181]; jasmonic acid biosynthetic process [GO:0009695]; oxylipin biosynthetic process [GO:0031408]; response to fungus [GO:0009620]; response to ozone [GO:0010193]; stamen development [GO:0048443] DEVELOPMENTAL STAGE: At the initiation time of the stomium degeneration program, expressed in all floral organs. Later, transcripts levels increase in pistil, petal, stamen filament, and in vascular region close to the stamen filament. When the anther dehiscence is initiated, levels of transcripts decrease, except within the vascular tissues. {ECO:0000269|PubMed:10899973}. TISSUE SPECIFICITY: Expressed in green seedling, leaves, flowers (anthers, pistil, petal and stamen), and to a lower extent in roots and siliques. Specifically expressed in filament during anther dehiscence initiation. {ECO:0000269|PubMed:10899973, ECO:0000269|PubMed:10973494, ECO:0000269|PubMed:11094980}. locus:2051516; AT2G06050 12-oxophytodienoate reductase 12-oxophytodienoate reductase 7 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 7) (OPDA-reductase 7) (OsOPR7) Q6Z965 OPR7_ORYSJ OPR7 OPR13 Os08g0459600 LOC_Os08g35740 OsJ_27573 P0493A04.35 P0690E03.3 FUNCTION: Involved in the biosynthesis of jasmonic acid (JA) and perhaps in biosynthesis or metabolism of other oxylipin signaling moleclules. May be required for the spatial and temporal regulation of JA levels during dehiscence of anthers, promoting the stomium degeneration program. In vitro, reduces cis(+)-12-oxophytodienoic acid (cis(+)-OPDA) and cis(-)-OPDA to cis(+)-OPC-8:0 and cis(-)-OPC-8:0, respectively. {ECO:0000269|PubMed:17938955}. MISCELLANEOUS: Over-expression of OPR7 in Arabidopsis thaliana opr3 mutant functionally complements the male sterility phenotype and restores jasmonate production. ENOG411E0UD GEP Q8VZF3 CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic (EC 3.4.21.-) FUNCTION: Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues (By similarity). {ECO:0000250, ECO:0000269|Ref.4}. 3.4.21.- 106103 Probable glutamyl endopeptidase, chloroplastic (EC 3.4.21.-) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; serine-type peptidase activity [GO:0008236] locus:2065200; AT2G47390 glutamyl endopeptidase Probable glutamyl endopeptidase, chloroplastic (EC 3.4.21.-) Q10MJ1 CGEP_ORYSJ GEP Os03g0307100 LOC_Os03g19410 OsJ_10563 FUNCTION: Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues (By similarity). {ECO:0000250}. ENOG411E0UE Q8RYE2 Q8RYE2_ARATH Camphor resistance CrcB family protein (Expressed protein) (Uncharacterized protein At2g41705/T11A7.22) 50473 Camphor resistance CrcB family protein (Expressed protein) (Uncharacterized protein At2g41705/T11A7.22) integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]; fluoride transmembrane transporter activity [GO:1903425]; fluoride transmembrane transport [GO:1903424] locus:505006314; AT2G41705 Camphor resistance CrcB family protein CrcB-like protein, expressed (Os10g0567000 protein) (cDNA clone:J033127B07, full insert sequence) Q108X7 Q108X7_ORYSJ LOC_Os10g41749 Os10g0567000 OsJ_32506 OSNPB_100567000 ENOG411E0UF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TB2/DP1 HVA22 family HVA22-like protein B9GBZ6,A0A0P0XZI2 B9GBZ6_ORYSJ,A0A0P0XZI2_ORYSJ Os12g0158600 OsJ_35292 OSNPB_120158600,Os11g0156600 OSNPB_110156600 ENOG411E0UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cbl-interacting protein kinase CBL-interacting protein kinase 10 (EC 2.7.11.1) (OsCIPK10) Q10LQ2 CIPKA_ORYSJ CIPK10 Os03g0339900 LOC_Os03g22050 FUNCTION: CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}. ENOG411E0UA CYP18-1 Q9LPC7 CP18A_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-1 (PPIase CYP18-1) (EC 5.2.1.8) (Cyclophilin of 18 kDa 1) (Cyclophilin-18-1) FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). {ECO:0000250}. 5.2.1.8 17503 Peptidyl-prolyl cis-trans isomerase CYP18-1 (PPIase CYP18-1) (EC 5.2.1.8) (Cyclophilin of 18 kDa 1) (Cyclophilin-18-1) cytoplasm [GO:0005737]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15047905, ECO:0000269|PubMed:15051864}. locus:2025492; AT1G01940 PPIases accelerate the folding of proteins (By similarity) Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) Q9SNN7 Q9SNN7_ORYSJ Os06g0130500 Os06g0130500 OsJ_19996 OSNPB_060130500 P0493C11.6 FUNCTION: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. {ECO:0000256|RuleBase:RU363019}. ENOG411E0UB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA flagellar inner arm dynein light chain p28 NA NA NA NA NA NA NA ENOG411E0UC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Possible lysine decarboxylase NA NA NA NA NA NA NA ENOG411E0UX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif CCT motif family protein, expressed (Os10g0560400 protein) (cDNA clone:002-146-C03, full insert sequence) Q7XC67 Q7XC67_ORYSJ OSJNBa0042H09.9 LOC_Os10g41100 Os10g0560400 OSNPB_100560400 ENOG411E0UY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Berberine and berberine like Os08g0158200 protein (Putative Reticuline oxidase) (cDNA clone:J023019G18, full insert sequence),Os08g0158300 protein (Putative berberine bridge enzyme) Q84PV7,Q84PV6 Q84PV7_ORYSJ,Q84PV6_ORYSJ P0498E12.107 Os08g0158200 OsJ_26110 OSNPB_080158200,P0498E12.108 Os08g0158300 OSNPB_080158300 ENOG411E0UU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Probable glucuronosyltransferase Os01g0926600 (EC 2.4.-.-) Q8S1X8 GT14_ORYSJ Os01g0926600 LOC_Os01g70190 OsJ_04617 OSJNBa0093F16.18 P0482D04.16 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411E0UV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposase (Ptta/En/Spm family) Os04g0228600 protein (Fragment),Os11g0519100 protein,Os01g0697250 protein,Os06g0240600 protein (Fragment),Os04g0519100 protein,Os02g0583500 protein A0A0P0W872,A0A0P0Y2I4,A0A0P0V745,A0A0N7KLU5,A0A0P0WCL5,A0A0P0VKY4 A0A0P0W872_ORYSJ,A0A0P0Y2I4_ORYSJ,A0A0P0V745_ORYSJ,A0A0N7KLU5_ORYSJ,A0A0P0WCL5_ORYSJ,A0A0P0VKY4_ORYSJ Os04g0228600 OSNPB_040228600,Os11g0519100 OSNPB_110519100,Os01g0697250 OSNPB_010697250,Os06g0240600 OSNPB_060240600,Os04g0519100 OSNPB_040519100,Os02g0583500 OSNPB_020583500 ENOG411E0UW Q8L6Y7 PP193_ARATH Pentatricopeptide repeat-containing protein At2g38420, mitochondrial 51597 Pentatricopeptide repeat-containing protein At2g38420, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2057185; AT2G38420 Pentatricopeptide repeat-containing protein Os12g0109900 protein A0A0N7KTG4 A0A0N7KTG4_ORYSJ Os12g0109900 OSNPB_120109900 ENOG411E0UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os03g0678400 protein (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:J013153F20, full insert sequence),Os12g0636000 protein (Zinc finger C3H4 type protein) (Zinc finger, C3HC4 type family protein, expressed) (cDNA clone:001-045-D12, full insert sequence) (cDNA clone:J013030E05, full insert sequence) Q84SW9,Q2QLM8 Q84SW9_ORYSJ,Q2QLM8_ORYSJ Os03g0678400 LOC_Os03g47500 Os03g0678400 OsJ_12099 OSJNBa0092M19.20 OSNPB_030678400,LOC_Os12g43930 Os12g0636000 OSNPB_120636000 ENOG411E0UR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0US NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome P450 NA NA NA NA NA NA NA ENOG411E0U8 PAP12 Q38924 PPA12_ARATH Fe(3+)-Zn(2+) purple acid phosphatase 12 (PAP) (EC 3.1.3.2) (Iron(III)-zinc(II) purple acid phosphatase 12) 3.1.3.2 54123 Fe(3+)-Zn(2+) purple acid phosphatase 12 (PAP) (EC 3.1.3.2) (Iron(III)-zinc(II) purple acid phosphatase 12) cytosol [GO:0005829]; extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; cellular response to phosphate starvation [GO:0016036] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2005533; AT2G27190 Purple acid phosphatase NA NA NA NA NA NA NA ENOG411E0U9 ARD4 Q8H185 MTND4_ARATH 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 4) (ARD 4) (Fe-ARD 4) FUNCTION: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). {ECO:0000255|HAMAP-Rule:MF_03154}. PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 5/6. {ECO:0000255|HAMAP-Rule:MF_03154}. ARA:AT5G43850-MONOMER; R-ATH-1237112; 1.13.11.54 22448 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 4) (ARD 4) (Fe-ARD 4) cytoplasm [GO:0005737]; nucleus [GO:0005634]; acireductone dioxygenase [iron(II)-requiring] activity [GO:0010309]; metal ion binding [GO:0046872]; L-methionine salvage from methylthioadenosine [GO:0019509]; methionine metabolic process [GO:0006555] locus:2170842; AT5G43850 Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 12-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (By similarity) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring) 4) (ARD 4) (Fe-ARD 4),Os03g0161800 protein (Fragment) Q7XEJ5,A0A0P0VTB7 MTND4_ORYSJ,A0A0P0VTB7_ORYSJ ARD4 Os10g0419500 LOC_Os10g28360 OsJ_31545,Os03g0161800 OSNPB_030161800 FUNCTION: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). {ECO:0000255|HAMAP-Rule:MF_03154}. ENOG411E0U4 MFC16.18,smB Q9FI15,Q9SUN5 Q9FI15_ARATH,Q9SUN5_ARATH Small nuclear ribonucleoprotein-associated protein R-ATH-72163;R-ATH-72165; 26999,27140 Small nuclear ribonucleoprotein-associated protein catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; nucleolus [GO:0005730]; U1 snRNP [GO:0005685]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; U4 snRNP [GO:0005687]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; viral nucleocapsid [GO:0019013]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398],Cajal body [GO:0015030]; catalytic step 2 spliceosome [GO:0071013]; cytosol [GO:0005829]; nucleoplasm [GO:0005654]; U1 snRNP [GO:0005685]; U2 snRNP [GO:0005686]; U2-type prespliceosome [GO:0071004]; U4 snRNP [GO:0005687]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]; viral nucleocapsid [GO:0019013]; RNA binding [GO:0003723]; mRNA splicing, via spliceosome [GO:0000398] locus:2163416;,locus:2128610; AT5G44500,AT4G20440 small nuclear ribonucleoprotein-associated protein NA NA NA NA NA NA NA ENOG411E0U5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acyltransferase OSJNBa0053K19.24 protein (Os04g0625200 protein) Q7XPP9 Q7XPP9_ORYSJ Os04g0625200 OsJ_16232 OSJNBa0053K19.24 OSNPB_040625200 ENOG411E0U6 O64583,A0A1P8AZ15 P2C28_ARATH,A0A1P8AZ15_ARATH Probable protein phosphatase 2C 28 (AtPP2C28) (EC 3.1.3.16),Protein phosphatase 2C family protein (Fragment) 3.1.3.16 37881,34144 Probable protein phosphatase 2C 28 (AtPP2C28) (EC 3.1.3.16),Protein phosphatase 2C family protein (Fragment) metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2061579; AT2G34740 phosphatase 2C NA NA NA NA NA NA NA ENOG411E0U7 B3LFC8,A0A1P8BGX4,A0A1P8BGX9,F4KH74 B3LFC8_ARATH,A0A1P8BGX4_ARATH,A0A1P8BGX9_ARATH,F4KH74_ARATH At5g24620 (Pathogenesis-related thaumatin superfamily protein),Pathogenesis-related thaumatin superfamily protein 44748,53278,50964,32787 At5g24620 (Pathogenesis-related thaumatin superfamily protein),Pathogenesis-related thaumatin superfamily protein integral component of membrane [GO:0016021] locus:2153929; AT5G24620 pathogenesis-related protein 5-like Os08g0517800 protein,Os10g0524900 protein,Os09g0498300 protein,Os04g0576600 protein A0A0N7KQ53,A0A0P0XWT5,A0A0P0XP28,A0A0P0WDN5 A0A0N7KQ53_ORYSJ,A0A0P0XWT5_ORYSJ,A0A0P0XP28_ORYSJ,A0A0P0WDN5_ORYSJ Os08g0517800 OSNPB_080517800,Os10g0524900 OSNPB_100524900,Os09g0498300 OSNPB_090498300,Os04g0576600 OSNPB_040576600 ENOG411E0U0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BEL1-like homeodomain protein NA NA NA NA NA NA NA ENOG411E0U1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec1 family Probable protein transport Sec1b,Os06g0135900 protein Q5VNU3,Q0DET7 SEC1B_ORYSJ,Q0DET7_ORYSJ Os06g0135900 LOC_Os06g04450 P0001H02.27 P0548D03.12,Os06g0135900 Os06g0135900 OSNPB_060135900 FUNCTION: Involved in the vesicle trafficking. Binds syntaxins (By similarity). {ECO:0000250}. ENOG411E0U2 Q6NPS1 Q6NPS1_ARATH At1g61690 (Phosphoinositide binding protein) (Uncharacterized protein At1g61690) 128944 At1g61690 (Phosphoinositide binding protein) (Uncharacterized protein At1g61690) plasmodesma [GO:0009506]; metal ion binding [GO:0046872] locus:2195753; AT1G61690 FYVE zinc finger Os03g0669800 protein (Fragment) A0A0P0W185 A0A0P0W185_ORYSJ Os03g0669800 OSNPB_030669800 ENOG411E0U3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein Harpin-induced protein 1 containing protein, expressed (Os12g0159600 protein) (cDNA clone:006-302-D07, full insert sequence) (cDNA clone:J023048L05, full insert sequence),Harpin-induced protein 1 (Hin1), putative (Harpin-induced protein 1 containing protein, expressed) (Os11g0157200 protein) (cDNA clone:001-207-B08, full insert sequence) (cDNA clone:002-173-F02, full insert sequence) (cDNA clone:006-301-C09, full insert sequence) (cDNA clone:006-301-F10, full insert sequence) (cDNA clone:006-306-C11, full insert sequence) (cDNA clone:J023052I16, full insert sequence) Q2QXF1,Q53NC9 Q2QXF1_ORYSJ,Q53NC9_ORYSJ Os12g0159600 LOC_Os12g06260 Os12g0159600 OsJ_35298 OSNPB_120159600,Os11g0157200 LOC_Os11g05860 Os11g0157200 OSNPB_110157200 ENOG411E0IZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3444) DnaJ domain containing protein, expressed (Os11g0578500 protein),Os11g0573800 protein Q2R250,A0A0P0Y3F3 Q2R250_ORYSJ,A0A0P0Y3F3_ORYSJ Os11g0578500 LOC_Os11g37000 Os11g0578500 OSNPB_110578500,Os11g0573800 OSNPB_110573800 ENOG411E0IP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin-induced protein NA NA NA NA NA NA NA ENOG411E0IQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine threonine-protein kinase Cx32 Os03g0131000 protein (Fragment) A0A0P0VSN3 A0A0P0VSN3_ORYSJ Os03g0131000 OSNPB_030131000 ENOG411E0IS OTU3 Q8GYW0,A0A1P8B2M2 Q8GYW0_ARATH,A0A1P8B2M2_ARATH At2g38025 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme 3) (Putative auxin-regulated protein),Cysteine proteinases superfamily protein 26273,24019 At2g38025 (Cysteine proteinases superfamily protein) (OTU-containing deubiquitinating enzyme 3) (Putative auxin-regulated protein),Cysteine proteinases superfamily protein cytosol [GO:0005829]; nucleus [GO:0005634]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; endoplasmic reticulum unfolded protein response [GO:0030968]; protein deubiquitination [GO:0016579]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:504955906; AT2G38025 OTU-like cysteine protease family protein NA NA NA NA NA NA NA ENOG411E0IU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3049) Expressed protein (Os03g0261800 protein) (cDNA clone:J023084D19, full insert sequence),Os03g0261800 protein (Fragment) Q10NR6,A0A0P0VVR2 Q10NR6_ORYSJ,A0A0P0VVR2_ORYSJ LOC_Os03g15530 Os03g0261800 OSNPB_030261800,Os03g0261800 OSNPB_030261800 ENOG411E0IW ABC4 Q0WUA3 MENA_ARATH 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic (EC 2.5.1.130) (1,4-dihydroxy-2-naphthoate phytyltransferase) (1,4-dihydroxy-2-naphthoate polyprenyltransferase) (Protein ABERRANT CHLOROPLAST DEVELOPMENT 4) (menA-like protein) (AtMENA) DISRUPTION PHENOTYPE: Slower growth and dwarfism. Albino phenotype in aging leaves. Decreased number of chloroplasts, but normal lamellar structure retained. Absence of phylloquinone and 97% decrease in the content of plastoquinone. Pale green seedlings. Can only be grown on media.Chloroplasts have increased grana stacks and fewer stroma thylakoids. Decreased photosynthtic efficiency. Seedling lethal without exogenous sucrose; Abnormal chloroplast development-K. Takamiya-2005 FUNCTION: Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 2-carboxy-1,4-naphthoquinone. {ECO:0000269|PubMed:15686525}. 2.5.1.130 42037 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic (EC 2.5.1.130) (1,4-dihydroxy-2-naphthoate phytyltransferase) (1,4-dihydroxy-2-naphthoate polyprenyltransferase) (Protein ABERRANT CHLOROPLAST DEVELOPMENT 4) (menA-like protein) (AtMENA) chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity [GO:0046428]; prenyltransferase activity [GO:0004659]; photosynthetic electron transport in photosystem II [GO:0009772]; phylloquinone biosynthetic process [GO:0042372]; plastoquinone biosynthetic process [GO:0010236]; ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate [GO:0032194]; vitamin K biosynthetic process [GO:0042371] locus:2036484; AT1G60600 14-dihydroxy-2-naphthoate 1,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed (Os03g0190100 protein) (cDNA clone:001-041-H11, full insert sequence) (cDNA clone:J013060C07, full insert sequence) Q10QN3 Q10QN3_ORYSJ LOC_Os03g09060 Os03g0190100 OsJ_09720 OSNPB_030190100 ENOG411DS1V MYB65,MYB33 Q9FR97,Q8W1W6,A0A1I9LR38 MYB65_ARATH,MYB33_ARATH,A0A1I9LR38_ARATH Transcription factor MYB65 (Myb-related protein 65) (AtMYB65),Transcription factor MYB33 (Myb-related protein 33) (AtMYB33),Myb domain protein 65 DISRUPTION PHENOTYPE: Reduced expression levels of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. The triple mutant myb33 myb65 myb101 has a male sterility and exhibits slower protein storage vacuoles (PSVs) vacuolation rate in aleurone layers upon seed germination (PubMed:20699403). The myb33 myb65 double mutant is defective in anther development, with a tapetum undergoing hypertrophy at the pollen mother cell stage, resulting in premeiotic abortion of pollen development and male sterility. This sterility is conditional, fertility being increased both under higher light or lower temperature conditions (PubMed:15722475). {ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}.,DISRUPTION PHENOTYPE: Hyposensitivity to abscisic acid (ABA) (PubMed:17217461). Reduced expression levels of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. The triple mutant myb33 myb65 myb101 has a male sterility and exhibits slower protein storage vacuoles (PSVs) vacuolation rate in aleurone layers upon seed germination (PubMed:20699403). The myb33 myb65 double mutant is defective in anther development, with a tapetum undergoing hypertrophy at the pollen mother cell stage, resulting in premeiotic abortion of pollen development and male sterility. This sterility is conditional, fertility being increased both under higher light or lower temperature conditions (PubMed:15722475). {ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}. FUNCTION: Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}.,FUNCTION: Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB65 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Binds to a GARE site (GA-response element) in the LEAFY promoter, essential for its gibberellic acid (GA)-mediated induction (PubMed:15226253). Together with MYB65, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}. 61365,58395,52377 Transcription factor MYB65 (Myb-related protein 65) (AtMYB65),Transcription factor MYB33 (Myb-related protein 33) (AtMYB33),Myb domain protein 65 nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; anther development [GO:0048653]; anther wall tapetum morphogenesis [GO:0048655]; gibberellic acid mediated signaling pathway [GO:0009740]; negative regulation of cell proliferation [GO:0008285]; negative regulation of growth [GO:0045926]; pollen sperm cell differentiation [GO:0048235]; positive regulation of programmed cell death [GO:0043068]; positive regulation of transcription, DNA-templated [GO:0045893]; protein storage vacuole organization [GO:1990019]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; response to ethylene [GO:0009723]; response to salicylic acid [GO:0009751]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; anther development [GO:0048653]; anther wall tapetum morphogenesis [GO:0048655]; gibberellic acid mediated signaling pathway [GO:0009740]; negative regulation of cell proliferation [GO:0008285]; negative regulation of growth [GO:0045926]; pollen sperm cell differentiation [GO:0048235]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of programmed cell death [GO:0043068]; positive regulation of transcription, DNA-templated [GO:0045893]; protein storage vacuole organization [GO:1990019]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to cytokinin [GO:0009735]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] DEVELOPMENTAL STAGE: In germinating seeds, present in the root tip and in a linear array of up to 20 to 30 cells above the root tip. Strongly expressed in the inflorescence apex, and, to some extent, in the inflorescence stem, the vascular tissue, and the vascular tissue in leaf primordia (PubMed:11743113). In flowers, expressed in sepals, style, receptacle, anther filaments, and connective but not in anthers themselves (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475}.,DEVELOPMENTAL STAGE: In germinating seeds, present in the root tip and in a linear array of up to 20 to 30 cells above the root tip. Weak expression in the vegetative shoot apex. High levels in primordial leaves. Strongly expressed in the inflorescence apex, and, to some extent, in the inflorescence stem, the vascular tissue, and the vascular tissue in leaf primordia. In the gynoecium, confined to ovules. In developing anthers detected in developing locules of immature anthers and later, at low levels, in pollen grains (PubMed:11743113). In flowers, expressed in sepals, style, receptacle, anther filaments, especially in young anthers, and connective but not in anthers themselves (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475}. TISSUE SPECIFICITY: Mostly expressed in roots (e.g. root tips), stems, pollen, shoot apices, flowers and floral shoot tips, and, to a lower extent, in leaves and siliques. {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:24278028}.,TISSUE SPECIFICITY: Mostly expressed in stems, shoot apices, flowers and floral shoot tips, and, to a lower extent, in roots (e.g. root tips), seedlings, leaves and siliques. {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:9839469}. locus:2080697;,locus:2152830; AT3G11440,AT5G06100 Transcription factor Transcription factor GAMYB (OsGAMyb),Os05g0490600 protein,Os01g0226800 protein Q0JIC2,Q0DH57,A0A0P0V076 GAMYB_ORYSJ,Q0DH57_ORYSJ,A0A0P0V076_ORYSJ GAMYB GAM1 MYBGA Os01g0812000 LOC_Os01g59660 OsJ_003732 P0425G02.18-1 P0425G02.18-2,Os05g0490600 Os05g0490600 OSNPB_050490600,Os01g0226800 OSNPB_010226800 DISRUPTION PHENOTYPE: Plants are not defective in root and leaf elongation, but present shortened internodes and defects in pollen and floral development (PubMed:14688295). Delayed flowering (PubMed:19454733). Male sterile. Defective in anther and pollen development (PubMed:19454733, PubMed:20590996). {ECO:0000269|PubMed:14688295, ECO:0000269|PubMed:19454733, ECO:0000269|PubMed:20590996}. FUNCTION: Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. Required for anther development (PubMed:19454733, PubMed:20590996). Functions in parallel with UDT1 to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). Required for pollen development. Probably required for controlling tapetal cell size and promoting tapetal programmed cell death (PCD) during anther development. Required for exine and Ubisch body formation in anthers. Interacts with the DNA specific motifs of giberrellin-up-regulated genes of anthers and regulates their expression. Positively regulates the expression of the laurate hydroxylase CYP703A3, known to be essential for the development of pollen exine and anther epicuticular layer (PubMed:19454733). Functions with MYBS1 to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of GAMYB and MYBS1, resulting in the expression of a large set of GA-inducible hydrolases, transporters and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:14688295, ECO:0000269|PubMed:19454733, ECO:0000269|PubMed:20590996, ECO:0000269|PubMed:22773748}. ENOG411DS1Q VIPP1,PTAC4 O80796,A0A1P8ATS2 VIPP1_ARATH,A0A1P8ATS2_ARATH Membrane-associated protein VIPP1, chloroplastic (Protein VESICLE-INDUCING PROTEIN IN PLASTIDS 1),Plastid transcriptionally active 4 DISRUPTION PHENOTYPE: Pale green and unable to grow photoautotrophically on soil. {ECO:0000269|PubMed:11274447}. deficient in photosynthesis thylakoid membrane system degraded. FUNCTION: Required for plastid vesicle formation and thylakoid membrane biogenesis, but not for functional assembly of thylakoid protein complexes. {ECO:0000269|PubMed:11274447, ECO:0000269|PubMed:17346982}. 36392,28913 Membrane-associated protein VIPP1, chloroplastic (Protein VESICLE-INDUCING PROTEIN IN PLASTIDS 1),Plastid transcriptionally active 4 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; nucleoid [GO:0009295]; plastid chromosome [GO:0009508]; thylakoid membrane organization [GO:0010027]; vesicle organization [GO:0016050] locus:2206290; AT1G65260 Membrane-associated 30 kDa protein Probable membrane-associated 30 kDa protein, chloroplastic Q8S0J7 IM30_ORYSJ Os01g0895100 LOC_Os01g67000 B1078G07.38 OsJ_04390 P0696G06.15 ENOG411DS1R TTG1 Q9XGN1 TTG1_ARATH Protein TRANSPARENT TESTA GLABRA 1 urm23 mutant leaves produce almost normal trichomes with slight clustering phenotype. Neither root hair patterning anthocyanin (flavonoid) biosynthesis nor seed coat mucilage production are affected in urm23 distinguishing this allele from all other known ttg1 alleles.,urm23 enhances the hypomorphic gl1-2 allele and results in almost complete glabrousness (loss of trichomes) in normal growth condition. urm23 gl1-2 double mutant does not increase trichomes at all in response to wounding or methyl jasmonate treatment. urm23 is dominant in gl1-2 background. gl1-2 is incompletely dominant in urm23 background. Yellow seed coat; Abnormal trichome and root hair development-J. Gray-1999 FUNCTION: May regulate MYC transcription factors. Involved in epidermal cell fate specification such as trichome and root hair development, seed mucilage production, and anthocyanin biosynthesis by acting at the dihydroflavonol-4-reductase (DFR) step. Together with GL1 and GL3, promotes trichome formation. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:11585796}. R-ATH-8951664; 37892 Protein TRANSPARENT TESTA GLABRA 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; cell fate commitment [GO:0045165]; epidermal cell fate specification [GO:0009957]; multicellular organism development [GO:0007275]; regulation of protein localization [GO:0032880]; response to auxin [GO:0009733]; response to ethylene [GO:0009723]; trichome differentiation [GO:0010026] TISSUE SPECIFICITY: Roots, leaves, stems, meristems, flowers and flower buds. locus:2153914; AT5G24520 transparent testa glabra Os02g0682500 protein (Putative anthocyanin biosynthetic gene regulator PAC1) Q3V826 Q3V826_ORYSJ Os02g0682500 OJ1123_G04.15 OsJ_07944 OSNPB_020682500 ENOG411DS1S RDR2 O82504 RDR2_ARATH RNA-dependent RNA polymerase 2 (AtRDRP2) (EC 2.7.7.48) (Protein SILENCING MOVEMENT DEFICIENT 1) (RNA-directed RNA polymerase 2) DISRUPTION PHENOTYPE: Late flowering and absence of siRNAs derived from FWA tandem repeat regions. Loss of de novo methylation. {ECO:0000269|PubMed:17105345, ECO:0000269|PubMed:21150311}. Complete loss of telomeric DNA methylation-K. Riha-2010 FUNCTION: RNA-dependent direct polymerase involved in the production of small interfering RNAs (siRNAs). Required for the biogenesis of endogenous siRNAs of 24 nucleotide which derive from heterochromatin and DNA repeats such as transposons or endogenous gene tandem repeats, such as repeats present in FWA gene. Involved in transcriptional gene silencing (TGS). Component of the RNA-directed DNA methylation (RdDM) silencing pathway that utilizes siRNAs to guide DNA methyltransferases to asymmetric cytosines. Involved in control of flowering time through RdDM of FWA locus. Required for reception of long-distance mRNA silencing in the shoot. Required for the formation of telomeric siRNAs and the RNA-dependent DNA methylation of asymmetric cytosines in telomeric (5'-CCCTAAA-3') repeats. {ECO:0000269|PubMed:15024409, ECO:0000269|PubMed:15692015, ECO:0000269|PubMed:16798886, ECO:0000269|PubMed:17105345, ECO:0000269|PubMed:17526749, ECO:0000269|PubMed:17785412, ECO:0000269|PubMed:20548962, ECO:0000269|PubMed:21150311, ECO:0000269|PubMed:23142082}. MISCELLANEOUS: RDR2 is non-functional in the absence of associated Pol IV. {ECO:0000305|PubMed:23142082}. 2.7.7.48; 2.7.7.48 129325 RNA-dependent RNA polymerase 2 (AtRDRP2) (EC 2.7.7.48) (Protein SILENCING MOVEMENT DEFICIENT 1) (RNA-directed RNA polymerase 2) nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]; defense response to fungus [GO:0050832]; gene silencing [GO:0016458]; long-distance posttranscriptional gene silencing [GO:0010495]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; production of siRNA involved in RNA interference [GO:0030422] locus:2136068; AT4G11130 RNA-dependent RNA polymerase Probable RNA-dependent RNA polymerase 2 (OsRDR2) (EC 2.7.7.48),RNA-dependent RNA polymerase (EC 2.7.7.48) (Fragment) Q7XM31,A0A0P0WB44 RDR2_ORYSJ,A0A0P0WB44_ORYSJ RDR2 Os04g0465700 LOC_Os04g39160 OSJNBb0048E02.13,Os04g0465700 OSNPB_040465700 FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000250}.,FUNCTION: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). {ECO:0000256|RuleBase:RU363098}. ENOG411DS1M F4J5A7,F4J5A9 F4J5A7_ARATH,F4J5A9_ARATH RNA recognition motif (RRM)-containing protein 108793,102836 RNA recognition motif (RRM)-containing protein metal ion binding [GO:0046872]; RNA binding [GO:0003723] locus:2076121; AT3G23900 RNA recognition motif Nuclear protein-like (Os01g0101600 protein) (cDNA clone:J013123J12, full insert sequence) (cDNA clone:J033128C08, full insert sequence),Os01g0101600 protein (Fragment) Q655M5,A0A0P0UXC8 Q655M5_ORYSJ,A0A0P0UXC8_ORYSJ Os01g0101600 OsJ_00013 OSNPB_010101600 P0672D08.22,Os01g0101600 OSNPB_010101600 ENOG411DS1N O64486 O64486_ARATH At1g04210 (F20D22.2 protein) (Leucine-rich repeat protein kinase family protein) (Uncharacterized protein At1g04210) R-ATH-389357;R-ATH-5607761;R-ATH-5668541;R-ATH-5676590; 125158 At1g04210 (F20D22.2 protein) (Leucine-rich repeat protein kinase family protein) (Uncharacterized protein At1g04210) ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107] locus:2020220; AT1G04210 STYKc Os03g0744300 protein (Fragment) Q0DNN7,A0A0P0W3T9 Q0DNN7_ORYSJ,A0A0P0W3T9_ORYSJ Os03g0744300 OSNPB_030744300 ENOG411DS1H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Heat shock protein Os02g0464900 protein A0A0P0VIR4 A0A0P0VIR4_ORYSJ Os02g0464900 OSNPB_020464900 ENOG411DS1J DMS3 Q94A79 DMS3_ARATH Protein DEFECTIVE IN MERISTEM SILENCING 3 (Protein INVOLVED IN DE NOVO 1) DISRUPTION PHENOTYPE: Very low levels of RNAi-mediated methylation and derepression of silenced genes. Impaired RNA polymerase V-chromatin associations (Pol V). The mutant idn1-1 fails to establish DNA methylation and exhibits a late-flowering phenotype. {ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:19377477, ECO:0000269|PubMed:19915591, ECO:0000269|PubMed:22647529, ECO:0000269|PubMed:22864289}. WT morphological phenotype. Decreased DNA methylation of target genes. Abnormal DNA methylation-A. Matzke-2007 FUNCTION: Component of the RNA-directed DNA methylation (RdDM) machinery, probably by facilitating an RNAi-mediated epigenetic modification involving secondary siRNAs and spreading of DNA methylation, thus leading to gene silencing. Involved in the assembly of RNA polymerase V (Pol V) transcription initiation or elongation complexes at the chromatin, as a component of the DDR complex. Required for de novo DNA methylation. {ECO:0000269|PubMed:18425128, ECO:0000269|PubMed:19377477, ECO:0000269|PubMed:19915591, ECO:0000269|PubMed:22647529, ECO:0000269|PubMed:22864289}. 46767 Protein DEFECTIVE IN MERISTEM SILENCING 3 (Protein INVOLVED IN DE NOVO 1) DNA-directed RNA polymerase V complex [GO:0000419]; protein homodimerization activity [GO:0042803]; DNA methylation [GO:0006306]; gene silencing by RNA [GO:0031047]; regulation of production of siRNA involved in chromatin silencing by small RNA [GO:0070921]; RNA-directed DNA methylation [GO:0080188] locus:2082876; AT3G49250 NA Os01g0235200 protein (cDNA clone:001-124-H02, full insert sequence),Os01g0235200 protein Q5NAX4,A0A0P0V0P4 Q5NAX4_ORYSJ,A0A0P0V0P4_ORYSJ P0702F03.31-1 P0708G02.4-1 Os01g0235200 OSNPB_010235200,Os01g0235200 OSNPB_010235200 ENOG411DS1K KIN7H,KIN7G,KIN7J,MDH9.19 F4JZ68,F4J394,Q9FIG8,A0A1P8BH14,A0A1I9LN46,F4J395 KN7H_ARATH,KN7G_ARATH,KN7J_ARATH,A0A1P8BH14_ARATH,A0A1I9LN46_ARATH,F4J395_ARATH Kinesin-like protein KIN-7H,Kinesin-like protein KIN-7G,Kinesin-like protein KIN-7J,ATP binding microtubule motor family protein,Kinesin-like protein 121424,119334,106099,123276,101994,119073 Kinesin-like protein KIN-7H,Kinesin-like protein KIN-7G,Kinesin-like protein KIN-7J,ATP binding microtubule motor family protein,Kinesin-like protein kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],kinesin complex [GO:0005871]; microtubule [GO:0005874]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018],microtubule [GO:0005874]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; microtubule-based movement [GO:0007018] locus:2155051;,locus:2080893;,locus:2162351; AT5G66310,AT3G51150,AT5G42490 Kinesin motor family protein Kinesin-like protein KIN-7H,Kinesin-like protein KIN-7J,Os01g0105400 protein (Fragment) Q6Z9D2,Q651Z7,A0A0P0UX31 KN7H_ORYSJ,KN7J_ORYSJ,A0A0P0UX31_ORYSJ KIN7H Os08g0547500 LOC_Os08g43400 OsJ_28179 P0544G09.15-1 P0544G09.15-2,KIN7J Os09g0528000 LOC_Os09g35890 OJ1439_F07.32 OsJ_30085,Os01g0105400 OSNPB_010105400 ENOG411DS1D MPH15.11 Q84JD5,B3H5W7 P2C68_ARATH,B3H5W7_ARATH Probable protein phosphatase 2C 68 (AtPP2C68) (EC 3.1.3.16),Protein phosphatase 2C family protein 3.1.3.16 44140,34882 Probable protein phosphatase 2C 68 (AtPP2C68) (EC 3.1.3.16),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2170234; AT5G06750 phosphatase 2C Probable protein phosphatase 2C 25 (OsPP2C25) (EC 3.1.3.16),Probable protein phosphatase 2C 43 (OsPP2C43) (EC 3.1.3.16),Os04g0584300 protein Q6ZHC8,Q7XUC5,A0A0P0WDX1 P2C25_ORYSJ,P2C43_ORYSJ,A0A0P0WDX1_ORYSJ Os02g0685600 LOC_Os02g46080 OJ1717_A09.24,Os04g0584300 Os04g0584366 LOC_Os04g49490 OsJ_015252 OSJNBa0088A01.23,Os04g0584300 OSNPB_040584300 ENOG411DS1E Q9FIT7 PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial 108809 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2174008; AT5G61990 Pentatricopeptide repeat-containing protein Os07g0300200 protein (Putative fertility restorer) (Putative fertility restorer homologue) Q6YS36 Q6YS36_ORYSJ Os07g0300200 B1032F05.34 B1114D08.4 OSNPB_070300200 ENOG411DS1B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os10g0469900 protein (POT family protein, expressed) (Putative peptide transport protein),Os10g0469900 protein (Fragment) Q7XDJ1,A0A0P0XVI3 Q7XDJ1_ORYSJ,A0A0P0XVI3_ORYSJ LOC_Os10g33170 Os10g0469900 OSJNBa0079L16.9 OSNPB_100469900,Os10g0469900 OSNPB_100469900 ENOG411DS18 RPL12C,RPL12A,RPL12B Q9FF52,P50883,Q9LFH5 RL123_ARATH,RL121_ARATH,RL122_ARATH 60S ribosomal protein L12-3,60S ribosomal protein L12-1,60S ribosomal protein L12-2 (ABI1-binding protein 11) FUNCTION: Binds directly to 26S ribosomal RNA. {ECO:0000250}. R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 17843,17942,17970 60S ribosomal protein L12-3,60S ribosomal protein L12-1,60S ribosomal protein L12-2 (ABI1-binding protein 11) cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; zinc ion binding [GO:0008270]; mature ribosome assembly [GO:0042256]; response to cold [GO:0009409]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412],cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; mature ribosome assembly [GO:0042256]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] locus:2175841;,locus:2061753;,locus:2084036; AT5G60670,AT2G37190,AT3G53430 60S ribosomal protein Os02g0699600 protein (Putative 60S ribosomal protein L12) (cDNA clone:J033076B01, full insert sequence),OSJNba0093F12.16 protein (Os04g0598200 protein) Q6Z8E0,Q0JAI2 Q6Z8E0_ORYSJ,Q0JAI2_ORYSJ Os02g0699600 Os02g0699600 OsJ_08042 OSNPB_020699600 P0459B01.28,Os04g0598200 Os04g0598200 OsJ_16016 OSJNba0093F12.16 OSNPB_040598200 ENOG411DS19 MKD15.20 Q9FMW7 Q9FMW7_ARATH At5g23340/MKD15_20 (RNI-like superfamily protein) (Similarity to glucose regulated repressor protein) (Uncharacterized protein At5g23340) 44226 At5g23340/MKD15_20 (RNI-like superfamily protein) (Similarity to glucose regulated repressor protein) (Uncharacterized protein At5g23340) locus:2166978; AT5G23340 F-box LRR-repeat protein Os02g0636400 protein (Fragment) Q0DZA1 Q0DZA1_ORYSJ Os02g0636400 Os02g0636400 OSNPB_020636400 ENOG411DS14 CDS5,CDS4 Q9M001,Q94A03,A0A1I9LT62 CDS5_ARATH,CDS4_ARATH,A0A1I9LT62_ARATH Phosphatidate cytidylyltransferase 5, chloroplastic (EC 2.7.7.41) (CDP-DAG synthase 5) (CDP-DG synthase 5) (CDP-diacylglycerol synthase 5) (CDS 5) (CDP-diglyceride pyrophosphorylase 5) (CDP-diglyceride synthase 5) (CTP:phosphatidate cytidylyltransferase 5),Phosphatidate cytidylyltransferase 4, chloroplastic (EC 2.7.7.41) (CDP-DAG synthase 4) (CDP-DG synthase 4) (CDP-diacylglycerol synthase 4) (CDS4) (CDP-diglyceride pyrophosphorylase 4) (CDP-diglyceride synthase 4) (CTP:phosphatidate cytidylyltransferase 4),Cytidinediphosphate diacylglycerol synthase 5 DISRUPTION PHENOTYPE: When associated with the disruption of CDS5, requires sucrose (Suc) treatment to grow. Pale yellow-green leaves with reduced chlorophyll levels but an increased chlorophyll a/b ratio. Reduced plastidial phosphatidylglycerol (PG) biosynthesis leading to abnormal thylakoid membrane development. {ECO:0000269|PubMed:20442275}. FUNCTION: May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction. Promotes the biosynthesis of plastidial phosphatidylglycerol (PG) which is required for structure and function of thylakoid membranes and, hence, for photoautotrophic growth. {ECO:0000269|PubMed:20442275}. PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3. {ECO:0000269|PubMed:20442275}. 2.7.7.41 43251,42159,38317 Phosphatidate cytidylyltransferase 5, chloroplastic (EC 2.7.7.41) (CDP-DAG synthase 5) (CDP-DG synthase 5) (CDP-diacylglycerol synthase 5) (CDS 5) (CDP-diglyceride pyrophosphorylase 5) (CDP-diglyceride synthase 5) (CTP:phosphatidate cytidylyltransferase 5),Phosphatidate cytidylyltransferase 4, chloroplastic (EC 2.7.7.41) (CDP-DAG synthase 4) (CDP-DG synthase 4) (CDP-diacylglycerol synthase 4) (CDS4) (CDP-diglyceride pyrophosphorylase 4) (CDP-diglyceride synthase 4) (CTP:phosphatidate cytidylyltransferase 4),Cytidinediphosphate diacylglycerol synthase 5 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; phosphatidate cytidylyltransferase activity [GO:0004605]; CDP-diacylglycerol biosynthetic process [GO:0016024]; phosphatidylglycerol biosynthetic process [GO:0006655],chloroplast membrane [GO:0031969]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; phosphatidate cytidylyltransferase activity [GO:0004605]; CDP-diacylglycerol biosynthetic process [GO:0016024]; phosphatidylglycerol biosynthetic process [GO:0006655],integral component of membrane [GO:0016021] locus:2101786;,locus:2055627; AT3G60620,AT2G45150 Phosphatidate cytidylyltransferase NA NA NA NA NA NA NA ENOG411DS15 MTE17.25 Q5HZ03,Q9LPS7 Q5HZ03_ARATH,Q9LPS7_ARATH At5g55530 (Calcium-dependent lipid-binding (CaLB domain) family protein),At1g50570 (Calcium-dependent lipid-binding (CaLB domain) family protein) (F11F12.11 protein) (Uncharacterized protein At1g50570) 44127,42153 At5g55530 (Calcium-dependent lipid-binding (CaLB domain) family protein),At1g50570 (Calcium-dependent lipid-binding (CaLB domain) family protein) (F11F12.11 protein) (Uncharacterized protein At1g50570) locus:2173937;,locus:2008011; AT5G55530,AT1G50570 domain-containing protein C2 domain-containing protein, putative, expressed (Os03g0194100 protein) (cDNA clone:J033007C02, full insert sequence),Os07g0585000 protein (cDNA clone:J023088L08, full insert sequence) Q8H7W2,Q8H5M0 Q8H7W2_ORYSJ,Q8H5M0_ORYSJ LOC_Os03g09840 Os03g0194100 OsJ_09755 OSJNBa0064E16.15 OSNPB_030194100,OJ1060_D03.112 Os07g0585000 OSNPB_070585000 ENOG411DS16 Q9FX66 Q9FX66_ARATH Endosomal targeting BRO1-like domain-containing protein (T6J4.7 protein) 42385 Endosomal targeting BRO1-like domain-containing protein (T6J4.7 protein) locus:2205344; AT1G13310 BRO1-like domain NA NA NA NA NA NA NA ENOG411DS17 RABG3E,RABG3D,RABG3C,RABG3F Q9XI98,Q9C820,Q9LW76,Q9LS94 RAG3E_ARATH,RAG3D_ARATH,RAG3C_ARATH,RAG3F_ARATH Ras-related protein RABG3e (AtRABG3e) (Ras-related protein Rab74) (AtRab74),Ras-related protein RABG3d (AtRABG3d) (Ras-related protein Rab72) (AtRab72),Ras-related protein RABG3c (AtRABG3c) (Ras-related protein Rab73) (AtRab73) (Ras-related protein Rab7D) (AtRab7D),Ras-related protein RABG3f (AtRABG3f) (Ras-related protein Rab71) (AtRab71) (Ras-related protein Rab7B) (AtRab7B) FUNCTION: Intracellular vesicle trafficking and protein transport. May play a role in adaptation to stress by recylcing macromolecules in specific cellular compartments. {ECO:0000269|PubMed:14657401}.,FUNCTION: Intracellular vesicle trafficking and protein transport. {ECO:0000250}.,FUNCTION: Essential for trafficking from prevacuolar compartments to vacuoles. Involved in the trafficking of newly synthesized protein to vacuoles. Essential for plant growth (PubMed:24824487). Participates in the recruitment of the core retromer components to the endosomal membrane by interacting with VPS35A (PubMed:23362252). {ECO:0000269|PubMed:23362252, ECO:0000269|PubMed:24824487}. MISCELLANEOUS: Plants overexpressing RABG3E exhibit accelerated endocytosis, increased tolerance to salt and osmotic stresses and reduced accumulation of reactive oxygen species during salt stress. {ECO:0000305|PubMed:14657401}.,MISCELLANEOUS: Over-expression of a dominant negative form of RABG3F (Asn-22) inhibits degradation of storage proteins in the protein storage vacuole and results in seedling death. {ECO:0000269|PubMed:24824487}. R-ATH-6798695;R-ATH-8854214;R-ATH-8876198; 22980,23069,22966,23102 Ras-related protein RABG3e (AtRABG3e) (Ras-related protein Rab74) (AtRab74),Ras-related protein RABG3d (AtRABG3d) (Ras-related protein Rab72) (AtRab72),Ras-related protein RABG3c (AtRABG3c) (Ras-related protein Rab73) (AtRab73) (Ras-related protein Rab7D) (AtRab7D),Ras-related protein RABG3f (AtRABG3f) (Ras-related protein Rab71) (AtRab71) (Ras-related protein Rab7B) (AtRab7B) Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651],Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],Golgi apparatus [GO:0005794]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; protein transport [GO:0015031],endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; late endosome membrane [GO:0031902]; nucleus [GO:0005634]; plant-type vacuole membrane [GO:0009705]; plasma membrane [GO:0005886]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; intracellular protein transport [GO:0006886]; late endosome to vacuole transport [GO:0045324]; vacuole organization [GO:0007033] locus:2010257;,locus:2018124;,locus:2093437;,locus:2094029; AT1G49300,AT1G52280,AT3G16100,AT3G18820 ras-related protein Os05g0516600 protein (Putative GTP-binding protein Rab7a) (cDNA clone:001-040-A09, full insert sequence) (cDNA clone:J013021E23, full insert sequence),Os01g0227300 protein (Putative RAB7D) (cDNA clone:006-211-E06, full insert sequence) (cDNA clone:J023052D24, full insert sequence) Q75IJ1,Q5N7Z9 Q75IJ1_ORYSJ,Q5N7Z9_ORYSJ Os05g0516600 B1130G10.11 OsJ_19205 OSNPB_050516600,Os01g0227300 Os01g0227300 OsJ_00961 OSNPB_010227300 P0452F10.8 ENOG411DS10 NEK5 Q0WPH8 NEK5_ARATH Serine/threonine-protein kinase Nek5 (EC 2.7.11.1) (NimA-related protein kinase 5) (AtNEK6) (AtNek5) Protuberances form on the surface of hypocotyls and petioles due to localized outgrowths of epidermal cells. Abnormal hypocotyl and petiole protrusions; Abnormal trichome branching; Disordered cell files in root epidermis-G. Wasteneys-2008 FUNCTION: Involved in epidermal-cell morphogenesis in hypocotyls and roots. May act on the microtubule function. May have a secondary role in trichome branching. {ECO:0000269|PubMed:17971038}. 2.7.11.1 106390 Serine/threonine-protein kinase Nek5 (EC 2.7.11.1) (NimA-related protein kinase 5) (AtNEK6) (AtNek5) cortical microtubule [GO:0055028]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; cortical microtubule organization [GO:0043622]; epidermal cell differentiation [GO:0009913]; microtubule-based process [GO:0007017] locus:2081383; AT3G44200 serine threonine-protein kinase Serine/threonine-protein kinase Nek4 (EC 2.7.11.1) (NimA-related protein kinase 4) (OsNek4),Serine/threonine-protein kinase Nek5 (EC 2.7.11.1) (NimA-related protein kinase 5) (OsNek5),Os01g0864700 protein (Fragment) Q60DG4,Q94CU5,A0A0P0VAQ9 NEK4_ORYSJ,NEK5_ORYSJ,A0A0P0VAQ9_ORYSJ NEK4 Os05g0440800 LOC_Os05g36960 B1110B01.5 OsJ_18694,NEK5 Os01g0864700 LOC_Os01g64490 OsJ_004086 P0423B08.37 P0505D12.3,Os01g0864700 OSNPB_010864700 FUNCTION: May be involved in plant development processes. {ECO:0000305|PubMed:17886359}. ENOG411DS11 F4I2G4,F4I2G3 F4I2G4_ARATH,F4I2G3_ARATH DTW domain-containing protein 35046,42917 DTW domain-containing protein locus:2825052; AT1G03687 DTW domain Os06g0343000 protein (Fragment),Os06g0342750 protein A0A0P0WW92,A0A0N7KM25 A0A0P0WW92_ORYSJ,A0A0N7KM25_ORYSJ Os06g0343000 OSNPB_060343000,Os06g0342750 OSNPB_060342750 ENOG411DS12 UGT76F2,UGT76F1 Q9M051,Q9M052 U76F2_ARATH,U76F1_ARATH UDP-glycosyltransferase 76F2 (EC 2.4.1.-),UDP-glycosyltransferase 76F1 (EC 2.4.1.-) ARA:AT3G55710-MONOMER;,ARA:AT3G55700-MONOMER; 2.4.1.- 52136,52162 UDP-glycosyltransferase 76F2 (EC 2.4.1.-),UDP-glycosyltransferase 76F1 (EC 2.4.1.-) intracellular membrane-bounded organelle [GO:0043231]; quercetin 3-O-glucosyltransferase activity [GO:0080043]; quercetin 7-O-glucosyltransferase activity [GO:0080044]; metabolic process [GO:0008152] locus:2078931;,locus:2078916; AT3G55710,AT3G55700 UDP-glucoronosyl UDP-glucosyl transferase family protein Os07g0241500 protein (Putative UDP-glucosyltransferase) (cDNA clone:002-125-F03, full insert sequence),Os07g0241600 protein,Os03g0824600 protein (Fragment) Q7XI35,B9FWC7,A0A0P0W4W5 Q7XI35_ORYSJ,B9FWC7_ORYSJ,A0A0P0W4W5_ORYSJ P0418E08.114 Os07g0241500 OSNPB_070241500,Os07g0241600 OsJ_23667 OSNPB_070241600,Os03g0824600 OSNPB_030824600 ENOG411DS13 Q8L4X4 GAT2_ARATH Probable GABA transporter 2 FUNCTION: May be involved in the transport of GABA. {ECO:0000250}. 49856 Probable GABA transporter 2 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] locus:2152995; AT5G41800 transporter Os01g0621200 protein A0A0P0V5C2 A0A0P0V5C2_ORYSJ Os01g0621200 OSNPB_010621200 ENOG411DW2Z TDX Q8VWG7 TDX_ARATH TPR repeat-containing thioredoxin TDX (HSP70-interacting protein 2) (AtHIP2) (Tetratricoredoxin) (AtTDX) DISRUPTION PHENOTYPE: High sensitivity to heat shock. {ECO:0000269|PubMed:19293385}. FUNCTION: Thiol-disulfide oxidoreductase that possesses insulin disulfide bonds reducing activity, disulfide reductase, foldase chaperone and holdase chaperone activities. Heat shock causes oligomerization and formation of high molecular weiht (HMW) complexes with concomitant functional switching from a disulfide reductase and foldase chaperone to a holdase chaperone. May interact with HSP70 proteins through the TPR repeats. {ECO:0000269|PubMed:12433921, ECO:0000269|PubMed:19293385}. R-ATH-3371453; 42846 TPR repeat-containing thioredoxin TDX (HSP70-interacting protein 2) (AtHIP2) (Tetratricoredoxin) (AtTDX) cell [GO:0005623]; Hsp70 protein binding [GO:0030544]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein dimerization activity [GO:0046983]; cell redox homeostasis [GO:0045454]; heat acclimation [GO:0010286]; protein folding [GO:0006457]; protein oligomerization [GO:0051259] locus:2088560; AT3G17880 TPR repeat-containing thioredoxin TPR repeat-containing thioredoxin TDX (OsTrx26) (Tetratricoredoxin) (OsTDX),Os09g0401200 protein (Fragment) Q6ES52,A0A0P0XMV5 TDX_ORYSJ,A0A0P0XMV5_ORYSJ Os09g0401200 LOC_Os09g23650 P0650H04.34,Os09g0401200 OSNPB_090401200 FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions and act as chaperone under heat shock. May interact with HSP70 proteins through the TPR repeats (By similarity). {ECO:0000250}. ENOG411DW2V F4JY55,A0A1P8BHE8 F4JY55_ARATH,A0A1P8BHE8_ARATH DNAJ heat shock family protein 37940,36943 DNAJ heat shock family protein unfolded protein binding [GO:0051082]; protein folding [GO:0006457] locus:2179429; AT5G25530 DnaJ homolog subfamily B member Heat shock protein 40 (Os08g0161900 protein) (Putative heat shock protein 40) (cDNA, clone: J065029L13, full insert sequence) Q84SD3 Q84SD3_ORYSJ P0577B11.125 Os08g0161900 OsJ_26136 OSNPB_080161900 ENOG411ECZ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411ECZA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phospholipid methyltransferase NA NA NA NA NA NA NA ENOG411EEYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 ERF domain-containing transcription factor source NA NA NA NA NA NA NA ENOG411EEYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Expressed protein (Os12g0540000 protein) (cDNA clone:002-147-F01, full insert sequence) Q2QP72 Q2QP72_ORYSJ Os12g0540000 LOC_Os12g35480 Os12g0540000 OSNPB_120540000 ENOG411EEYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family NA NA NA NA NA NA NA ENOG411EEYX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411DW22 IPT3 Q93WC9 IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic (AtIPT3) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 3) (Cytokinin synthase 3) DISRUPTION PHENOTYPE: No visible phenotype except some decreased root thickening, due the redundancy with other IPTs. {ECO:0000269|PubMed:17062755, ECO:0000269|PubMed:19074290}. Decreased levels of isopentenyladenosine riboside (iPR) and isopentenyladenosine monophosphate (iPRMP) compared to wild type.,Increased levels of cis-zeatin riboside (cZR) and cis-zeatin riboside monophosphate (cZRMP) compared to wild type.,No visible phenotype.,Decreases in free-base iP and tZ are moderate compared to those of the riboside and ribotide forms.,External application of trans-zeatin partially rescues the growth of aerial parts of the mutant and reduced its lateral root elongation.,Fewer rosette leaves than wild type indicating a prolonged plastochron.,Flowering time is delayed when grown on vermiculite but not on nutrient agar.,Indistinguishable from wild type in the early stages of development. Phenotypic differences become evident as the plant age.,Levels of iPRMP iPR tZRMP tZR. tZ-7-glucoside tZ-9-glucoside and tZ-O-glucoside are all reduced to less than 20% of those of wild type.,Rduced shoot apical meristem size and thin inflorescence stems.,Reduced cambial activity and reduced secondary growth in both shoots and roots.,Relative to wild type both the number of lateral roots (longer than 1cm) and the total length of the lateral roots are increased.,Short and thin aerial parts.,Some seeds are aborted but surviving ones are larger than those of wild type.,Thin small plants.,Enhanced root growth rate resulting in longer roots.,Mutant root meristems showed an increased number of meristematic cells already at two days after germination (dpg) and accumulated cells also after five dpg vastly exceeding the fixed number of cells of wild-type meristems. FUNCTION: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP. {ECO:0000269|PubMed:11313355, ECO:0000269|PubMed:15998742, ECO:0000269|PubMed:17062755}. ARA:AT3G63110-MONOMER;MetaCyc:AT3G63110-MONOMER; 2.5.1.112; 2.5.1.112 37915 Adenylate isopentenyltransferase 3, chloroplastic (AtIPT3) (EC 2.5.1.112) (Adenylate dimethylallyltransferase 3) (Cytokinin synthase 3) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; nuclear membrane [GO:0031965]; nucleus [GO:0005634]; plastid [GO:0009536]; ADP dimethylallyltransferase activity [GO:0052623]; AMP dimethylallyltransferase activity [GO:0009824]; ATP binding [GO:0005524]; ATP dimethylallyltransferase activity [GO:0052622]; tRNA dimethylallyltransferase activity [GO:0052381]; cytokinin biosynthetic process [GO:0009691]; tRNA modification [GO:0006400] TISSUE SPECIFICITY: Expressed the phloem companion cells. {ECO:0000269|PubMed:14675438, ECO:0000269|PubMed:15356331}. locus:2099177; AT3G63110 Adenylate isopentenyltransferase Adenylate isopentenyltransferase (Cytokinin synthase, putative, expressed) (Os03g0810100 protein) (Putative adenylate isopentenyltransferase) (cDNA clone:J023065G16, full insert sequence),Adenylate isopentenyltransferase (IPP transferase family protein) (Os03g0356900 protein) (cDNA, clone: J065046L22, full insert sequence),Adenylate isopentenyltransferase (Os07g0211700 protein) (Putative cytokinin synthase),Cytokinin synthase, putative (Os03g0358900 protein) Q6ATR2,Q33CD9,Q6YWE1,Q10L50 Q6ATR2_ORYSJ,Q33CD9_ORYSJ,Q6YWE1_ORYSJ,Q10L50_ORYSJ OSJNBa0028F23.9 OsIPT4 LOC_Os03g59570 Os03g0810100 OSNPB_030810100,OsIPT2 LOC_Os03g24240 Os03g0356900 OSNPB_030356900,Os07g0211700 OsIPT5 OSJNBb0042J07.7 OSNPB_070211700,Os03g0358900 LOC_Os03g24440 OSNPB_030358900 ENOG411E4DW Q9FWA5 Q9FWA5_ARATH At3g02340 (RING zinc-finger protein, putative; 7563-8792) (RING/U-box superfamily protein) (Uncharacterized protein At3g02340) R-ATH-983168; 45343 At3g02340 (RING zinc-finger protein, putative; 7563-8792) (RING/U-box superfamily protein) (Uncharacterized protein At3g02340) ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2074567; AT3G02340 RING NA NA NA NA NA NA NA ENOG411E4DT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein group Late embryogenesis abundant protein 14 (OsLEA14) (Protein WATER STRESS-INDUCED 18) Q94JF2 LEA14_ORYSJ LEA14 WSI18 Os01g0705200 LOC_Os01g50910 OsJ_03178 P0684B02.22 P0692C11.3 ENOG411E4DG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF538 Os06g0538900 protein (Fragment) A0A0P0WXJ2 A0A0P0WXJ2_ORYSJ Os06g0538900 OSNPB_060538900 ENOG411E4DE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FHA FHA domain containing protein, expressed (Os12g0124000 protein) (cDNA clone:006-207-C05, full insert sequence),Os11g0127800 protein (Fragment),Os12g0124000 protein (Fragment) Q2QYD1,A0A0P0XZB0,A0A0P0Y6G0,A0A0P0Y6M1,A0A0P0Y6D8,A0A0N7KSD2,A0A0P0Y6D6 Q2QYD1_ORYSJ,A0A0P0XZB0_ORYSJ,A0A0P0Y6G0_ORYSJ,A0A0P0Y6M1_ORYSJ,A0A0P0Y6D8_ORYSJ,A0A0N7KSD2_ORYSJ,A0A0P0Y6D6_ORYSJ Os12g0124000 LOC_Os12g03070 OsJ_35061 OSNPB_120124000,Os11g0127800 OSNPB_110127800,Os12g0124000 OSNPB_120124000 ENOG411E4DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family Os01g0814100 protein (Protease inhibitor-like protein) (cDNA clone:006-209-B11, full insert sequence) (p0432B10.23 protein) Q8RZK6 Q8RZK6_ORYSJ P0432B10.23 Os01g0814100 OsJ_03850 OSJNBa0085D07.22 OSNPB_010814100 ENOG411E4DA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein OSJNBa0084K01.8 protein (Os04g0662200 protein) (cDNA clone:002-135-A05, full insert sequence) Q7XM23 Q7XM23_ORYSJ Os04g0662200 OSJNBa0084K01.8 OSNPB_040662200 ENOG411DZ95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAA domain (dynein-related subfamily) NA NA NA NA NA NA NA ENOG411E4D8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase Os01g0690200 protein Q8S008 Q8S008_ORYSJ P0034C09.3 Os01g0690200 OSNPB_010690200 ENOG411E58S emb1129 Q9XIA6,Q9LHN1 Q9XIA6_ARATH,Q9LHN1_ARATH Nucleic acid-binding, OB-fold-like protein (Putative 40S ribosomal protein S17) (Putative ribosomal protein) (Uncharacterized protein At1g49400/F13F21_17),40S ribosomal protein S17-like (At3g18880) (Nucleic acid-binding, OB-fold-like protein) (Putative ribosomal protein) Embryo defective; Preglobular / Globular-D. Meinke-2002 12560,11697 Nucleic acid-binding, OB-fold-like protein (Putative 40S ribosomal protein S17) (Putative ribosomal protein) (Uncharacterized protein At1g49400/F13F21_17),40S ribosomal protein S17-like (At3g18880) (Nucleic acid-binding, OB-fold-like protein) (Putative ribosomal protein) cytosolic small ribosomal subunit [GO:0022627]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2010227;,locus:2087896; AT1G49400,AT3G18880 ribosomal protein Os08g0359600 protein (Putative ribosomal protein S17) (cDNA clone:J023065H04, full insert sequence) Q6YYA7 Q6YYA7_ORYSJ Os08g0359600 OJ1014_E02.5 OsJ_27042 OSNPB_080359600 P0488B06.47 ENOG411E58Q PRB1 P33154,Q9ZNS4 PR1_ARATH,PRB1_ARATH Pathogenesis-related protein 1 (PR-1),Pathogenesis-related protein 1 (AtPRB1) FUNCTION: Partially responsible for acquired pathogen resistance.,FUNCTION: Probably involved in the defense reaction of plants against pathogens. {ECO:0000250|UniProtKB:P04284}. 17677,17543 Pathogenesis-related protein 1 (PR-1),Pathogenesis-related protein 1 (AtPRB1) apoplast [GO:0048046]; cell wall [GO:0005618]; defense response [GO:0006952]; response to vitamin B1 [GO:0010266]; response to water deprivation [GO:0009414]; systemic acquired resistance [GO:0009627],extracellular region [GO:0005576]; defense response, incompatible interaction [GO:0009814]; response to bacterium [GO:0009617]; response to ethylene [GO:0009723]; response to herbivore [GO:0080027]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to wounding [GO:0009611] TISSUE SPECIFICITY: Expressed in flowers, stems and roots but not in leaves. {ECO:0000269|PubMed:11725949}. locus:2064294;,locus:2055240; AT2G14610,AT2G14580 basic form of pathogenesis-related protein 1-like NA NA NA NA NA NA NA ENOG411E31B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribosomal protein Os10g0491801 protein (Putative ubiquitin/ribosomal protein S27a fusion protein) (Ubiquitin fusion protein, putative, expressed) Q9FWV0 Q9FWV0_ORYSJ Os10g0491801 LOC_Os10g34990 OsJ_31995 OSJNBa0051D19.8 OSNPB_100491801 ENOG411E31A O82299 O82299_ARATH Putative chloroplast RNA binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein) 33786 Putative chloroplast RNA binding protein (RNA-binding (RRM/RBD/RNP motifs) family protein) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; thylakoid [GO:0009579]; mRNA binding [GO:0003729] locus:2062379; AT2G35410 kDa ribonucleoprotein OSJNBa0086O06.22 protein (Os04g0591000 protein) (cDNA clone:J023147E13, full insert sequence) Q7F9Y6 Q7F9Y6_ORYSJ Os04g0591000 Os04g0591000 OSJNBa0086O06.22 OSNPB_040591000 ENOG411E31E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Transcription factor Os11g0549670 protein (Fragment) A0A0P0Y3Q6 A0A0P0Y3Q6_ORYSJ Os11g0549670 OSNPB_110549670 ENOG411E31D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: RNA helicase Os03g0282700 protein (Pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative) Q10N49 Q10N49_ORYSJ LOC_Os03g17432 Os03g0282700 OSNPB_030282700 ENOG411E58T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant invertase/pectin methylesterase inhibitor Os04g0106000 protein (Fragment) Q0JFG1 Q0JFG1_ORYSJ Os04g0106000 Os04g0106000 OSNPB_040106000 ENOG411E31N F21O3.22 Q94K16,A0A1I9LQA1 Q94K16_ARATH,A0A1I9LQA1_ARATH Maternal effect embryo arrest protein (Uncharacterized protein At3g07510) (Uncharacterized protein F21O3.22),Maternal effect embryo arrest protein 20006,21248 Maternal effect embryo arrest protein (Uncharacterized protein At3g07510) (Uncharacterized protein F21O3.22),Maternal effect embryo arrest protein integral component of membrane [GO:0016021] locus:2079666; AT3G07510 NA Expressed protein (Os10g0178200 protein) (cDNA clone:002-115-H06, full insert sequence) Q8LNB7 Q8LNB7_ORYSJ LOC_Os10g09930 Os10g0178200 OsJ_30881 OSJNBa0047G15.10 OSNPB_100178200 ENOG411E31R WRKY1 Q9SI37 WRKY1_ARATH WRKY transcription factor 1 (Transcription factor ZAP1) (WRKY DNA-binding protein 1) (Zinc-dependent activator protein 1) FUNCTION: Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. MISCELLANEOUS: Binding to target DNA is mediated mainly by the C-terminal WRKY domain, while part of the activation domain is located between positions 210 and 285. 54010 WRKY transcription factor 1 (Transcription factor ZAP1) (WRKY DNA-binding protein 1) (Zinc-dependent activator protein 1) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; positive regulation of transcription, DNA-templated [GO:0045893]; salicylic acid mediated signaling pathway [GO:0009863]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. locus:2045049; AT2G04880 WRKY transcription factor NA NA NA NA NA NA NA ENOG411E31Q Q1G3P4,B3H5B1,Q9SJG5 Q1G3P4_ARATH,B3H5B1_ARATH,Q9SJG5_ARATH Carbohydrate-binding X8 domain superfamily protein,At2g42930 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein At2g42930) 24066,16746,14996 Carbohydrate-binding X8 domain superfamily protein,At2g42930 (Carbohydrate-binding X8 domain superfamily protein) (Uncharacterized protein At2g42930) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:1009023225;,locus:2045595; AT2G30933,AT2G42930 X8 domain Os05g0581900 protein Q6L5D9 Q6L5D9_ORYSJ Os05g0581900 OJ1651_G11.6 OSNPB_050581900 ENOG411E31P F4JCQ8 F4JCQ8_ARATH tRNA (Ile)-lysidine synthase 39222 tRNA (Ile)-lysidine synthase chloroplast [GO:0009507] locus:2100402; AT3G47850 NA Os05g0220900 protein,Os05g0220900 protein (Fragment) Q75G50,A0A0P0WJE1 Q75G50_ORYSJ,A0A0P0WJE1_ORYSJ OSJNBb0043H23.5 Os05g0220900 B1003C08.7 OsJ_17586 OSNPB_050220900,Os05g0220900 OSNPB_050220900 ENOG411E50R MSJ1.24 Q9FME9,A0A1P8BDN9,F4KDN4 Q9FME9_ARATH,A0A1P8BDN9_ARATH,F4KDN4_ARATH CHCH domain protein (Emb|CAB89373.1) (Uncharacterized protein At5g64400),CHCH domain protein 14404,12714,16933 CHCH domain protein (Emb|CAB89373.1) (Uncharacterized protein At5g64400),CHCH domain protein locus:2173393; AT5G64400 CHCH domain NA NA NA NA NA NA NA ENOG411E50S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ferredoxin-thioredoxin reductase variable NA NA NA NA NA NA NA ENOG411E50Q Q9LYX4,Q9ZQC7 Q9LYX4_ARATH,Q9ZQC7_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (At5g03110) (Protamine P1 family protein) (Uncharacterized protein F15A17_140),Protamine P1 family protein (Uncharacterized protein At2g37100) 32690,33757 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 (At5g03110) (Protamine P1 family protein) (Uncharacterized protein F15A17_140),Protamine P1 family protein (Uncharacterized protein At2g37100) plasma membrane [GO:0005886] locus:2143483;,locus:2061738; AT5G03110,AT2G37100 NA NA NA NA NA NA NA NA ENOG411E50T Q9FVX3 Q9FVX3_ARATH At1g77350/F2P24_6 (Keratinocyte-associated-like protein) (Uncharacterized protein F2P24.6) 13049 At1g77350/F2P24_6 (Keratinocyte-associated-like protein) (Uncharacterized protein F2P24.6) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021] locus:2031437; AT1G77350 protein KRTCAP2 homolog Os05g0486200 protein Q0DH81 Q0DH81_ORYSJ Os05g0486200 Os05g0486200 OSNPB_050486200 ENOG411E50M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA auxin-induced protein NA NA NA NA NA NA NA ENOG411E50C DREB2G P61827 DRE2G_ARATH Dehydration-responsive element-binding protein 2G (Protein DREB2G) FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. 34234 Dehydration-responsive element-binding protein 2G (Protein DREB2G) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351] locus:2146248; AT5G18450 dehydration-responsive element-binding protein Dehydration-responsive element-binding protein 2C (OsDREB2C) Q84ZA1 DRE2C_ORYSJ DREB2C AP22 ERF44 Os08g0565200 LOC_Os08g45110 OSJNBa0044E16.12 P0705A05.128 FUNCTION: Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. ENOG411E50A F26O13.150 Q9SCZ8 Q9SCZ8_ARATH AT3g51510/F26O13_150 (Transmembrane protein) (Uncharacterized protein At3g51510) (Uncharacterized protein F26O13.150) 19846 AT3g51510/F26O13_150 (Transmembrane protein) (Uncharacterized protein At3g51510) (Uncharacterized protein F26O13.150) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021] locus:2081850; AT3G51510 NA Os05g0490900 protein (cDNA clone:002-182-B08, full insert sequence) Q6F333 Q6F333_ORYSJ Os05g0490900 OsJ_19023 OSJNBa0088I06.7 OSNPB_050490900 ENOG411E50D RHA1A,RHA1B,MYC6.11 Q9SUS4,Q9SUS5,Q9CAJ8,Q9FN60 RHA1A_ARATH,RHA1B_ARATH,Q9CAJ8_ARATH,Q9FN60_ARATH Probable E3 ubiquitin-protein ligase RHA1A (EC 2.3.2.27) (RING-H2 finger A1a) (RING-H2 zinc finger protein RHA1a) (RING-type E3 ubiquitin transferase RHA1A),E3 ubiquitin-protein ligase RHA1B (EC 2.3.2.27) (RING-H2 finger A1b) (RING-H2 zinc finger protein RHA1b) (RING-type E3 ubiquitin transferase RHA1B),At1g63840/T12P18_14 (Putative RING zinc finger protein) (Putative RING zinc finger protein; 50221-50721) (RING/U-box superfamily protein),Putative RING zinc finger protein (RING zinc finger protein-like) (RING/U-box superfamily protein) FUNCTION: Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. {ECO:0000250|UniProtKB:Q9ZT50}.,FUNCTION: Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro. {ECO:0000269|PubMed:15644464}. PATHWAY: Protein modification; protein ubiquitination. {ECO:0000305}.,PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 18309,17996,19056,20030 Probable E3 ubiquitin-protein ligase RHA1A (EC 2.3.2.27) (RING-H2 finger A1a) (RING-H2 zinc finger protein RHA1a) (RING-type E3 ubiquitin transferase RHA1A),E3 ubiquitin-protein ligase RHA1B (EC 2.3.2.27) (RING-H2 finger A1b) (RING-H2 zinc finger protein RHA1b) (RING-type E3 ubiquitin transferase RHA1B),At1g63840/T12P18_14 (Putative RING zinc finger protein) (Putative RING zinc finger protein; 50221-50721) (RING/U-box superfamily protein),Putative RING zinc finger protein (RING zinc finger protein-like) (RING/U-box superfamily protein) metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161],metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; response to cadmium ion [GO:0046686]; response to chitin [GO:0010200],integral component of membrane [GO:0016021]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; response to abscisic acid [GO:0009737],ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] TISSUE SPECIFICITY: Predominantly expressed in stems. {ECO:0000269|PubMed:9781696}. locus:2128303;,locus:2128293;,locus:2195498;,locus:2177931; AT4G11370,AT4G11360,AT1G63840,AT5G41400 zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411E502 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os02g0271900 protein (Putative MYBY3 protein) Q6ESU2 Q6ESU2_ORYSJ Os02g0271900 Os02g0271900 OSNPB_020271900 P0521F09.8 ENOG411E500 NDR1 O48915,Q9LJT8,Q9LJT9 NDR1_ARATH,Q9LJT8_ARATH,Q9LJT9_ARATH Protein NDR1 (Non-race specific disease resistance protein 1) (AtNDR1),Non-race specific disease resistance protein (Non-race specific disease resistance protein-like),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Non-race specific disease resistance protein-like) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition. In case of infection, plants loose R gene resistance mediated by RPM1, RPS2, RPS5. Plants overexpressing NDR1 show enhanced resistance against the virulent strain of the bacterial pathogen Pst DC3000. {ECO:0000269|PubMed:11607554}. Susceptible to disease-B. Staskawicz-1997 FUNCTION: Involved in disease resistance. Required for resistance conferred by multiple R genes recognizing different bacterial and oomycete pathogen isolates like avirulent P.syringae or H.parasitica (downy mildew). Required for the establishment of hypersensitive response (HR) and systemic acquired resistance (SAR) after infection with the bacterial pathogen P.syringae DC3000 carrying avrRpt2. Required for resistance to the soilborne fungus V.longisporum. Interaction with RIN4 is required for the activation of the R gene RPS2 and RPS2-mediated resistance. {ECO:0000269|PubMed:11607554, ECO:0000269|PubMed:11706189, ECO:0000269|PubMed:15447649, ECO:0000269|PubMed:16941900, ECO:0000269|PubMed:17012600}. 24674,25728,29377 Protein NDR1 (Non-race specific disease resistance protein 1) (AtNDR1),Non-race specific disease resistance protein (Non-race specific disease resistance protein-like),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Non-race specific disease resistance protein-like) anchored component of plasma membrane [GO:0046658]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to fungus, incompatible interaction [GO:0009817]; defense response, incompatible interaction [GO:0009814]; plant-type hypersensitive response [GO:0009626]; positive regulation of cell death [GO:0010942],anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952],anchored component of plasma membrane [GO:0046658]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] locus:2085725;,locus:2085735;,locus:2085715; AT3G20600,AT3G20610,AT3G20590 disease resistance NA NA NA NA NA NA NA ENOG411E507 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA X8 domain Os07g0600700 protein (cDNA clone:006-302-C09, full insert sequence) (cDNA clone:006-307-A05, full insert sequence) (cDNA clone:J033126J18, full insert sequence) Q0D4W1 Q0D4W1_ORYSJ Os07g0600700 Os07g0600700 OSNPB_070600700 ENOG411E505 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin NA NA NA NA NA NA NA ENOG411EM0W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EM0T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EK1Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA alpha/beta hydrolase fold Hydrolase, alpha/beta fold family protein, putative, expressed (Os12g0118400 protein) (cDNA clone:J013078I18, full insert sequence),Os11g0119100 protein Q2QYI3,A0A0P0XY95 Q2QYI3_ORYSJ,A0A0P0XY95_ORYSJ Os12g0118400 LOC_Os12g02589 OsJ_35021 OSNPB_120118400,Os11g0119100 OSNPB_110119100 ENOG411EK1V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterized protein family UPF0054 Haloacid dehalogenase-like hydrolase-like (Os02g0227000 protein) Q6H5Z1 Q6H5Z1_ORYSJ Os02g0227000 OSNPB_020227000 P0495C02.32 P0620H05.5 ENOG411EM0I ATJ11 Q9FYB5 DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic (AtDjC11) (AtJ11) FUNCTION: Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. 17822 Chaperone protein dnaJ 11, chloroplastic (AtDjC11) (AtJ11) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; nucleus [GO:0005634]; plastid [GO:0009536] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and developing siliques. {ECO:0000269|PubMed:11516154}. locus:2135159; AT4G36040 DnaJ domain NA NA NA NA NA NA NA ENOG411EM0N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EK1I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: calmodulin-binding family NA NA NA NA NA NA NA ENOG411EK1F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATP-utilising chromatin assembly and remodelling N-terminal NA NA NA NA NA NA NA ENOG411DUW0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Expressed protein (Os03g0336000 protein) (cDNA clone:J013162P09, full insert sequence),Os05g0308900 protein Q10LT2,A0A0P0WKS0 Q10LT2_ORYSJ,A0A0P0WKS0_ORYSJ Os03g0336000 LOC_Os03g21780 Os03g0336000 OSNPB_030336000,Os05g0308900 OSNPB_050308900 ENOG411DUW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0107400 protein (Fragment) Q0DVY2 Q0DVY2_ORYSJ Os03g0107400 Os03g0107400 OSNPB_030107400 ENOG411DUW3 TKPR2 Q9CA28,F4HXB1 TKPR2_ARATH,F4HXB1_ARATH Tetraketide alpha-pyrone reductase 2 (EC 1.1.1.-) (Protein CINNAMOYL-COA REDUCTASE-LIKE 6),NAD(P)-binding Rossmann-fold superfamily protein DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21193572}. Abnormal pollen exine layer-M. Legrand-2010 FUNCTION: May be involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. {ECO:0000269|PubMed:21193572}. ARA:AT1G68540-MONOMER;MetaCyc:AT1G68540-MONOMER; 1.1.1.- 35666,23914 Tetraketide alpha-pyrone reductase 2 (EC 1.1.1.-) (Protein CINNAMOYL-COA REDUCTASE-LIKE 6),NAD(P)-binding Rossmann-fold superfamily protein cytosol [GO:0005829]; coenzyme binding [GO:0050662]; oxidoreductase activity [GO:0016491]; pollen exine formation [GO:0010584]; sporopollenin biosynthetic process [GO:0080110],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] locus:2201272; AT1G68540 bifunctional dihydroflavonol 4-reductase flavanone Os01g0127500 protein (Putative cinnamoyl CoA reductase) Q9FTS0 Q9FTS0_ORYSJ Os01g0127500 OSNPB_010127500 P0409B08.20 ENOG411DUW5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING Os12g0267900 protein (Zinc finger, C3HC4 type family protein, expressed) Q2QUC7 Q2QUC7_ORYSJ Os12g0267900 LOC_Os12g16690 Os12g0267900 OsJ_17665 OSNPB_120267900 ENOG411DUW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ribose-phosphate pyrophosphokinase Ribose-phosphate pyrophosphokinase 2, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 2),Os06g0617800 protein (Fragment),Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (Fragment) Q69XQ6,A0A0P0WYW5,A0A0P0WYR8 KPRS2_ORYSJ,A0A0P0WYW5_ORYSJ,A0A0P0WYR8_ORYSJ Os06g0617800 LOC_Os06g41360 P0012B02.3-1 P0012B02.3-2,Os06g0617800 OSNPB_060617800 ENOG411DUW9 A2RVT9 A2RVT9_ARATH AT5G38890 protein (At5g38890) (Nucleic acid-binding, OB-fold-like protein) R-ATH-429958;R-ATH-450604;R-ATH-6791226; 20232 AT5G38890 protein (At5g38890) (Nucleic acid-binding, OB-fold-like protein) cytoplasm [GO:0005737]; nuclear exosome (RNase complex) [GO:0000176]; RNA binding [GO:0003723] locus:2152297; AT5G38890 Exosome complex component Os02g0815800 protein Q0DWG8 Q0DWG8_ORYSJ Os02g0815800 Os02g0815800 OSNPB_020815800 ENOG411EM00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411DUWS PGSIP8,PGSIP7 Q8VZP6,F4JMI5,Q8S8K3,A0A1P8AX70 GUX8_ARATH,GUX7_ARATH,Q8S8K3_ARATH,A0A1P8AX70_ARATH Putative glucuronosyltransferase PGSIP8 (EC 2.4.1.-) (Glycogenin-like protein 8) (Plant glycogenin-like starch initiation protein 8),Putative glucuronosyltransferase PGSIP7 (EC 2.4.1.-) (Glycogenin-like protein 7) (Plant glycogenin-like starch initiation protein 7),Expressed protein (Nucleotide-diphospho-sugar transferases superfamily protein),Nucleotide-diphospho-sugar transferases superfamily protein R-ATH-5357572;R-ATH-6798695;R-ATH-70221; 2.4.1.- 56798,56997,13285,36780 Putative glucuronosyltransferase PGSIP8 (EC 2.4.1.-) (Glycogenin-like protein 8) (Plant glycogenin-like starch initiation protein 8),Putative glucuronosyltransferase PGSIP7 (EC 2.4.1.-) (Glycogenin-like protein 7) (Plant glycogenin-like starch initiation protein 7),Expressed protein (Nucleotide-diphospho-sugar transferases superfamily protein),Nucleotide-diphospho-sugar transferases superfamily protein integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; transferase activity, transferring glycosyl groups [GO:0016757]; protein glycosylation [GO:0006486],integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; transferase activity, transferring glycosyl groups [GO:0016757],integral component of membrane [GO:0016021]; transferase activity [GO:0016740],transferase activity, transferring glycosyl groups [GO:0016757]; protein glycosylation [GO:0006486] locus:2058754;,locus:2130854; AT2G35710,AT4G16600 glycosyl transferase 8 domain containing protein Glycogenin glucosyltransferase (EC 2.4.1.186) (Glycogenin, putative, expressed) (Os10g0555100 protein),Os04g0553800 protein (Fragment) Q9AV15,A0A0P0WD89,A0A0P0WDB9,A0A0P0WD67 Q9AV15_ORYSJ,A0A0P0WD89_ORYSJ,A0A0P0WDB9_ORYSJ,A0A0P0WD67_ORYSJ LOC_Os10g40640 Os10g0555100 OsJ_32415 OSJNBb0014I11.6 OSNPB_100555100,Os04g0553800 OSNPB_040553800 ENOG411DUWT AHL1,AHL2 Q8VYJ2,O49658 AHL1_ARATH,AHL2_ARATH AT-hook motif nuclear-localized protein 1,AT-hook motif nuclear-localized protein 2 FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). May play a function in the positioning of chromatin fibers within the nucleus. {ECO:0000269|PubMed:15604740}.,FUNCTION: Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). {ECO:0000250|UniProtKB:Q8VYJ2}. 37312,35094 AT-hook motif nuclear-localized protein 1,AT-hook motif nuclear-localized protein 2 chromosomal region [GO:0098687]; cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; AT DNA binding [GO:0003680]; DNA binding [GO:0003677]; sequence-specific DNA binding [GO:0043565]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2118091;,locus:2132599; AT4G12080,AT4G22770 AT hook motif domain containing protein expressed AT-hook motif nuclear localized protein 1 (Os08g0118000 protein) (Putative AT-hook protein 1) (cDNA clone:J013146N22, full insert sequence) Q6ZJ55 Q6ZJ55_ORYSJ OsAHL1 Os08g0118000 OJ1005_B05.8 OsJ_25837 OSNPB_080118000 P0470F10.31 ENOG411DUWV O82637,Q9XGZ9,A0A1P8B784 P2C61_ARATH,P2C72_ARATH,A0A1P8B784_ARATH Probable protein phosphatase 2C 61 (AtPP2C61) (EC 3.1.3.16),Probable protein phosphatase 2C 72 (AtPP2C72) (EC 3.1.3.16),Protein phosphatase 2C family protein R-ATH-70895; 3.1.3.16 35122,36521,30360 Probable protein phosphatase 2C 61 (AtPP2C61) (EC 3.1.3.16),Probable protein phosphatase 2C 72 (AtPP2C72) (EC 3.1.3.16),Protein phosphatase 2C family protein metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722],protein serine/threonine phosphatase activity [GO:0004722] locus:2123792;,locus:2180612; AT4G32950,AT5G26010 phosphatase 2C Probable protein phosphatase 2C 12 (OsPP2C12) (EC 3.1.3.16),Os02g0224100 protein Q6Z8B9,Q6Z8B8 P2C12_ORYSJ,Q6Z8B8_ORYSJ Os02g0224100 LOC_Os02g13100 OsJ_005771 P0470A03.13-1,P0470A03.13-2 Os02g0224100 OSNPB_020224100 ENOG411DUWX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BROMO Bromodomain containing protein, expressed (Os03g0332366 protein) Q10LW9 Q10LW9_ORYSJ Os03g0332366 LOC_Os03g21450 OSNPB_030332366 ENOG411DUWB C7A10.260 O23176,F4IMJ8 O23176_ARATH,F4IMJ8_ARATH Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (Uncharacterized protein AT4g37100),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 100767,100050 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (Uncharacterized protein AT4g37100),Pyridoxal phosphate (PLP)-dependent transferases superfamily protein plasma membrane [GO:0005886]; transferase activity [GO:0016740] locus:2115179;,locus:2046837; AT4G37100,AT2G23520 expressed protein Os03g0765800 protein,Expressed protein (Os12g0590900 protein) (cDNA, clone: J100062H13, full insert sequence) Q7Y0C6,Q2QMU3 Q7Y0C6_ORYSJ,Q2QMU3_ORYSJ OSJNBa0079B15.16 Os03g0765800 OSNPB_030765800,LOC_Os12g40010 Os12g0590900 OSNPB_120590900 ENOG411DUWJ AT4G38390.1,AT1G20550.1 Q9SVE6,Q949U4,F4HSU3 Q9SVE6_ARATH,Q949U4_ARATH,F4HSU3_ARATH Putative growth regulator protein (Root hair specific 17),O-fucosyltransferase family protein (Putative auxin-independent growth promoter protein),O-fucosyltransferase family protein 62872,65581,64905 Putative growth regulator protein (Root hair specific 17),O-fucosyltransferase family protein (Putative auxin-independent growth promoter protein),O-fucosyltransferase family protein integral component of membrane [GO:0016021]; transferase activity, transferring glycosyl groups [GO:0016757],endosome [GO:0005768]; Golgi apparatus [GO:0005794]; trans-Golgi network [GO:0005802]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2121793;,locus:2014619;,locus:2030392; AT4G38390,AT1G76270,AT1G20550 DUF246 domain-containing protein Os04g0563000 protein (Fragment),Os08g0554050 protein A0A0P0WDP9,A0A0P0XI64 A0A0P0WDP9_ORYSJ,A0A0P0XI64_ORYSJ Os04g0563000 OSNPB_040563000,Os08g0554050 OSNPB_080554050 ENOG411EHGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHGD Q9FX42,F4HQ94 Q9FX42_ARATH,F4HQ94_ARATH AT1G73490 protein (At1g73490) (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein T9L24.49),RNA-binding (RRM/RBD/RNP motifs) family protein 29714,29842 AT1G73490 protein (At1g73490) (RNA-binding (RRM/RBD/RNP motifs) family protein) (Uncharacterized protein T9L24.49),RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2206920; AT1G73490 Inherit from KOG: Rna binding protein NA NA NA NA NA NA NA ENOG411EHGA TOM9-1 O64497 TOM91_ARATH Mitochondrial import receptor subunit TOM9-1 (Mitochondrial import receptor subunit TOM22 homolog 1) (Translocase of outer membrane 22 kDa subunit homolog 1) (Translocase of outer membrane 9 kDa subunit TOM9-1) FUNCTION: Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM20 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore (By similarity). {ECO:0000250}. 9940 Mitochondrial import receptor subunit TOM9-1 (Mitochondrial import receptor subunit TOM22 homolog 1) (Translocase of outer membrane 22 kDa subunit homolog 1) (Translocase of outer membrane 9 kDa subunit TOM9-1) integral component of mitochondrial outer membrane [GO:0031307]; mitochondrial outer membrane translocase complex [GO:0005742]; P-P-bond-hydrolysis-driven protein transmembrane transporter activity [GO:0015450]; protein import into mitochondrial matrix [GO:0030150]; protein import into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626] TISSUE SPECIFICITY: Expressed in roots, flowers, young cotyledons and leaves. {ECO:0000269|PubMed:14730085}. locus:2020275; AT1G04070 translocase of outer membrane 22-i NA NA NA NA NA NA NA ENOG411EHGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EHGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E58G MIO24.19 F4KDC4 F4KDC4_ARATH Hydroxyproline-rich glycoprotein family protein 37920 Hydroxyproline-rich glycoprotein family protein locus:2165296; AT5G51680 Hydroxyproline-rich glycoprotein family protein NA NA NA NA NA NA NA ENOG411E31X Q8LB89,A0A1P8AQJ5 Q8LB89_ARATH,A0A1P8AQJ5_ARATH At1g56090 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g56090),Tetratricopeptide repeat (TPR)-like superfamily protein 30704,39445 At1g56090 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein At1g56090),Tetratricopeptide repeat (TPR)-like superfamily protein integral component of membrane [GO:0016021] locus:2205225; AT1G56090 NA Os04g0616100 protein (Fragment) A0A0P0WET6 A0A0P0WET6_ORYSJ Os04g0616100 OSNPB_040616100 ENOG411EHG6 F3E22.11,dl4110w Q9M7Y1,Q9FJ12,O23462,A0A1P8B4M2 Q9M7Y1_ARATH,Q9FJ12_ARATH,O23462_ARATH,A0A1P8B4M2_ARATH F3E22.11 protein (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At3g06750),At5g49280 (Extensin like protein) (Hydroxyproline-rich glycoprotein family protein),At4g16140 (Extensin like protein) (Extensin like protein, predicted GPI-anchored protein) (Proline-rich family protein),Proline-rich family protein 15637,17051,17965,25175 F3E22.11 protein (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At3g06750),At5g49280 (Extensin like protein) (Hydroxyproline-rich glycoprotein family protein),At4g16140 (Extensin like protein) (Extensin like protein, predicted GPI-anchored protein) (Proline-rich family protein),Proline-rich family protein anchored component of membrane [GO:0031225],anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2083373;,locus:2155899;,locus:2130115; AT3G06750,AT5G49280,AT4G16140 NA NA NA NA NA NA NA NA ENOG411EHG5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ARID/BRIGHT DNA binding domain NA NA NA NA NA NA NA ENOG411DVMY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Clathrin assembly protein NA NA NA NA NA NA NA ENOG411DVMX F28J15.2 Q9LH49,A0A1I9LLP0 Q9LH49_ARATH,A0A1I9LLP0_ARATH At3g12170 (Chaperone DnaJ-domain superfamily protein) (DnaJ protein, putative; 5702-7336) (DnaJ protein-like) (Uncharacterized protein At3g12170),Chaperone DnaJ-domain superfamily protein 30152,34776 At3g12170 (Chaperone DnaJ-domain superfamily protein) (DnaJ protein, putative; 5702-7336) (DnaJ protein-like) (Uncharacterized protein At3g12170),Chaperone DnaJ-domain superfamily protein locus:2082189; AT3G12170 chaperone protein DnaJ NA NA NA NA NA NA NA ENOG411DVMH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF815) NA NA NA NA NA NA NA ENOG411DVMM O22844,Q84J94 O22844_ARATH,Q84J94_ARATH Far-red impaired responsive (FAR1) family protein (Uncharacterized protein At2g43280) 20092,24019 Far-red impaired responsive (FAR1) family protein (Uncharacterized protein At2g43280) regulation of transcription, DNA-templated [GO:0006355],nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; far-red light signaling pathway [GO:0010018]; positive regulation of circadian rhythm [GO:0042753]; positive regulation of transcription, DNA-templated [GO:0045893]; red, far-red light phototransduction [GO:0009585] locus:2041041; AT2G43280 far-red impaired responsive NA NA NA NA NA NA NA ENOG411DVME A8MRG8,B6EUC5 A8MRG8_ARATH,B6EUC5_ARATH Ribonuclease H2 subunit B 31520,18724 Ribonuclease H2 subunit B nucleus [GO:0005634] locus:4010713893; AT4G20325 ribonuclease H2 subunit Os04g0476400 protein (cDNA clone:J033082I06, full insert sequence) B7ESM9 B7ESM9_ORYSJ Os04g0476400 OSNPB_040476400 ENOG411DVM8 SGR2 Q8W5R2 SHGR2_ARATH Phospholipase SGR2 (EC 3.1.1.-) (Protein SHOOT GRAVITROPISM 2) DISRUPTION PHENOTYPE: Abnormal amyloplast sedimentation and shoot gravitropism. Abnormal gravitropism in both inflorescence stems and hypocotyls accompanied by misshapen seeds and seedlings, including leaf movement in darkness. Reduced formation of vacuolar membrane 'bulbs'. The sgr2-1 mutant has no gravitropic response in inflorescence stems but a reduced gravitropic response in hypocotyls. {ECO:0000269|PubMed:11826297, ECO:0000269|PubMed:11826298, ECO:0000269|PubMed:12024223, ECO:0000269|PubMed:16344262, ECO:0000269|PubMed:21645145, ECO:0000269|PubMed:8819871}. Abnormal gravitropism in inflorescence stems and hypocotyls. Some mutant seeds were shrunken and did not germinate. Although most seedlings were normal some had abnormal shape ofthen with one or three cotyledons.,Inflorescence stem failed to curve upward even after 6 h of horizontal gravistimulation. Plant size not affected in this mutation inflorescence stem twisted as the elongated and the lateral branches twisted downward. Reduced gravitropic response of ethyolated hypocotyls. Root gravitropism was normal.,showed a defect in sedimentation of amyloplasts in the petiole,abnormal gravitropic response Abnormal hypocotyl and inflorescence stem gravitropism-M. Tasaka-2002 FUNCTION: Involved in vacuolar formation or function (e.g. formation of vacuolar membrane 'bulbs'). Required for amyloplast sedimentation in the endodermis during shoot gravitropism, which are thus acting as statoliths. Particularly important for the negative gravitropism leading to leaf movement observed in darkness. {ECO:0000269|PubMed:11826297, ECO:0000269|PubMed:11826298, ECO:0000269|PubMed:12024223, ECO:0000269|PubMed:16344262, ECO:0000269|PubMed:21645145, ECO:0000269|PubMed:8819871}. 3.1.1.- 106316 Phospholipase SGR2 (EC 3.1.1.-) (Protein SHOOT GRAVITROPISM 2) plant-type vacuole membrane [GO:0009705]; plasmodesma [GO:0009506]; vacuole [GO:0005773]; metal ion binding [GO:0046872]; phosphatidylcholine 1-acylhydrolase activity [GO:0008970]; phospholipase activity [GO:0004620]; amyloplast organization [GO:0009660]; detection of gravity [GO:0009590]; lipid catabolic process [GO:0016042]; negative gravitropism [GO:0009959] DEVELOPMENTAL STAGE: Expressed in young seedlings and progressively confined in the elongation zone of the root during seedlings growth. {ECO:0000269|PubMed:11826298}. TISSUE SPECIFICITY: Expressed in roots, hypocotyls, leaves, stems and floral buds, and, at low levels, in siliques. {ECO:0000269|PubMed:11826297}. locus:2028641; AT1G31480 DDHD domain Os08g0110700 protein (Putative shoot gravitropism 2) (cDNA clone:J013087B12, full insert sequence),Os04g0264900 protein,Os07g0406600 protein (Fragment) Q6ZC54,A0A0P0W857,A0A0P0X4T9 Q6ZC54_ORYSJ,A0A0P0W857_ORYSJ,A0A0P0X4T9_ORYSJ Os08g0110700 OsJ_25787 OSNPB_080110700 P0007D08.37,Os04g0264900 OSNPB_040264900,Os07g0406600 OSNPB_070406600 ENOG411DVM7 COIL Q8RWK8 COIL_ARATH Coilin (Atcoilin) DISRUPTION PHENOTYPE: No visible phenotype, but loss of Cajal bodies. {ECO:0000269|PubMed:16624863}. FUNCTION: Probable component of nuclear coiled bodies, also known as Cajal bodies or CBs, which are involved in the modification and assembly of nucleoplasmic snRNPs (Probable). Required for CBs formation (PubMed:16624863). Binds snRNAs and non-specific artificial RNA via the N-terminal part of the NOD domain and via the NLS2 region (212-282) of the IDD domain (PubMed:23320094). The two sites are able to function independently and provide effective RNA-binding in a non-cooperative manner (PubMed:23320094). {ECO:0000269|PubMed:16624863, ECO:0000269|PubMed:23320094, ECO:0000305|PubMed:16624863}. 68667 Coilin (Atcoilin) Cajal body [GO:0015030]; U1 snRNA binding [GO:0030619]; U2 snRNA binding [GO:0030620]; RNA processing [GO:0006396] locus:2031810; AT1G13030 NA Expressed protein (Os12g0288600 protein) Q2QTN6 Q2QTN6_ORYSJ LOC_Os12g19040 Os12g0288600 OSNPB_120288600 ENOG411E5H6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os01g0595201 protein Q8L3Y3 Q8L3Y3_ORYSJ Os01g0595201 B1103C09.14 OsJ_02457 OSNPB_010595201 P0451D05.27 ENOG411E5H7 O81800,O81802 O81800_ARATH,O81802_ARATH Uncharacterized protein AT4g35690 (Uncharacterized protein F8D20.200),DUF241 domain protein, putative (DUF241) (Uncharacterized protein AT4g35710) (Uncharacterized protein F8D20.220) 31745,31580 Uncharacterized protein AT4g35690 (Uncharacterized protein F8D20.200),DUF241 domain protein, putative (DUF241) (Uncharacterized protein AT4g35710) (Uncharacterized protein F8D20.220) locus:2127928;,locus:2127958; AT4G35690,AT4G35710 Arabidopsis protein of unknown function NA NA NA NA NA NA NA ENOG411E5H5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) Acyl carrier protein Q75IP4 Q75IP4_ORYSJ LOC_Os03g63930 Os03g0856300 Os03g63930 OsJ_13431 OSNPB_030856300 FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000256|RuleBase:RU000722}. ENOG411E5H8 Q945P2,A0A1P8BE75 Q945P2_ARATH,A0A1P8BE75_ARATH AT5g49210/K21P3_8 (Stress response NST1-like protein),Stress response NST1-like protein 23504,16737 AT5g49210/K21P3_8 (Stress response NST1-like protein),Stress response NST1-like protein locus:2155914; AT5G49210 NA Os12g0146300 protein (Os12g0146400 protein),Expressed protein (Os11g0148600 protein) (Similar to AT5g49210/K21P3_8) (cDNA clone:J013161L12, full insert sequence) (cDNA clone:J033093M12, full insert sequence) C7J9F9,Q53PX1 C7J9F9_ORYSJ,Q53PX1_ORYSJ Os12g0146400 Os12g0146300 OSNPB_120146400,LOC_Os11g05120 Os11g0148600 OSNPB_110148600 ENOG411E5HJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0121600 protein Q0JR37 Q0JR37_ORYSJ Os01g0121600 Os01g0121600 OSNPB_010121600 ENOG411E5HH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0143200 protein,Os05g0482301 protein,Os05g0482100 protein,Os05g0482200 protein B9EZG3,Q5KQH9,A0A0P0WNY9,A0A0N7KKZ5 B9EZG3_ORYSJ,Q5KQH9_ORYSJ,A0A0P0WNY9_ORYSJ,A0A0N7KKZ5_ORYSJ Os01g0143200 OsJ_00330 OSNPB_010143200,Os05g0482301 OsJ_18959 OSJNBa0095J22.11 OSNPB_050482301,Os05g0482100 OSNPB_050482100,Os05g0482200 OSNPB_050482200 ENOG411E5HN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_U1 NA NA NA NA NA NA NA ENOG411E5HM Q9XIS1 Q9XIS1_ARATH At1g64700 (DUF4228 domain protein) (F13O11.2 protein) (F1N19.27) 22684 At1g64700 (DUF4228 domain protein) (F13O11.2 protein) (F1N19.27) locus:2010931; AT1G64700 NA NA NA NA NA NA NA NA ENOG411E5HR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nuclear transcription factor Y subunit HAP5 subunit of HAP complex (OSJNBa0032F06.24 protein) (Os04g0683400 protein) Q7XPV7 Q7XPV7_ORYSJ Os04g0683400 OsHAP5G OsJ_16673 OSJNBa0032F06.24 OSNPB_040683400 ENOG411E5HS TRX1 P29448 TRXH1_ARATH Thioredoxin H1 (AtTrxh1) (Thioredoxin 1) (AtTRX1) FUNCTION: Thiol-disulfide oxidoreductase involved in the redox regulation of a number of cytosolic enzymes. Activates the cytosolic malate dehydrogenase (MDH) probably by reducing an interchain disulfide bond of the inactive MDH homodimer. Possesses insulin disulfide bonds reducing activity. {ECO:0000269|PubMed:16945919}. 12673 Thioredoxin H1 (AtTrxh1) (Thioredoxin 1) (AtTRX1) apoplast [GO:0048046]; cytosol [GO:0005829]; enzyme activator activity [GO:0008047]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662]; positive regulation of catalytic activity [GO:0043085] locus:2080963; AT3G51030 Thioredoxin NA NA NA NA NA NA NA ENOG411E5HP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phytanoyl-CoA dioxygenase (PhyH) NA NA NA NA NA NA NA ENOG411E5HQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E5HT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0599700 protein (Fragment) A0A0P0YBZ0 A0A0P0YBZ0_ORYSJ Os12g0599700 OSNPB_120599700 ENOG411E5HU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0517700 protein (cDNA clone:002-134-B05, full insert sequence) (cDNA clone:J033086C12, full insert sequence) Q67IY2 Q67IY2_ORYSJ Os02g0517700 Os02g0517700 OsJ_06916 OSJNOa257A21.3 OSNPB_020517700 ENOG411E5HZ Q67YU2,Q9SVS5 Q67YU2_ARATH,Q9SVS5_ARATH Defensin-like protein (Uncharacterized protein At4g21720),At4g21720 (Defensin-like protein) (Uncharacterized protein At4g21720) (Uncharacterized protein F17L22.180) 11687,15437 Defensin-like protein (Uncharacterized protein At4g21720),At4g21720 (Defensin-like protein) (Uncharacterized protein At4g21720) (Uncharacterized protein F17L22.180) locus:2119023; AT4G21720 NA OSJNBb0017I01.18 protein (Os04g0680300 protein) (cDNA clone:J023063D06, full insert sequence) Q7XKD6 Q7XKD6_ORYSJ Os04g0680300 OsJ_16647 OSJNBb0017I01.18 OSNPB_040680300 ENOG411E5HY DFO,ATDFO Q8RX33,Q9LMJ9,A0A1P8AU91,A0A1P8AU93 Q8RX33_ARATH,Q9LMJ9_ARATH,A0A1P8AU91_ARATH,A0A1P8AU93_ARATH Uncharacterized protein At1g07060,F10K1.23,Uncharacterized protein 26396,31600,19056,31174 Uncharacterized protein At1g07060,F10K1.23,Uncharacterized protein meiotic DNA double-strand break formation [GO:0042138] locus:2007442; AT1G07060 NA Os12g0106100 protein,Os11g0106800 protein (Fragment) A0A0P0Y5W7,A0A0P0XY20 A0A0P0Y5W7_ORYSJ,A0A0P0XY20_ORYSJ Os12g0106100 OSNPB_120106100,Os11g0106800 OSNPB_110106800 ENOG411DSN6 Q9C9A2 PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial 58525 Pentatricopeptide repeat-containing protein At1g71060, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2026346; AT1G71060 Pentatricopeptide repeat-containing protein At1g71060 Os01g0505500 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q5QN81 Q5QN81_ORYSJ Os01g0505500 Os01g0505500 OsJ_01942 OSNPB_010505500 P0436D06.28 ENOG411E345 USPL1 Q9XI99 USPL1_ARATH BURP domain protein USPL1 (Unknown seed protein-like protein 1) (AtUSPL1) DISRUPTION PHENOTYPE: No visible effect on seed development, but significant reduction of 11S seed storage protein content in the mature seeds (PubMed:19639386). Enhanced drought tolerance (PubMed:25333723). {ECO:0000269|PubMed:19639386, ECO:0000269|PubMed:25333723}. FUNCTION: Associated with the protein storage vacuole formation. {ECO:0000269|PubMed:19639386}. 31811 BURP domain protein USPL1 (Unknown seed protein-like protein 1) (AtUSPL1) Golgi stack [GO:0005795]; late endosome [GO:0005770]; protein storage vacuole [GO:0000326]; seed development [GO:0048316] DEVELOPMENTAL STAGE: Expressed in embryos at the cotyledon stage. {ECO:0000269|PubMed:19639386}. TISSUE SPECIFICITY: Expressed in cotyledons, radicle, floral buds, open flowers, roots and developing seeds, but not in leaves (PubMed:19714473). Highly expressed in the root tips. Detected in young leaves, hypocotyls, stems and mature seed funiculum (PubMed:25333723). {ECO:0000269|PubMed:19714473, ECO:0000269|PubMed:25333723}. locus:2010237; AT1G49320 BURP domain-containing protein NA NA NA NA NA NA NA ENOG411E349 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein NA NA NA NA NA NA NA ENOG411EBKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF295) Os07g0689000 protein A0A0P0XAK6 A0A0P0XAK6_ORYSJ Os07g0689000 OSNPB_070689000 ENOG411E1QY Q9LT27 YCED1_ARATH Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic (23S rRNA accumulation protein YCED) (Protein DUF177A) DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:27574185}. FUNCTION: Plays a role in synthesis, processing and/or stability of 23S rRNA. Required for embryogenesis. {ECO:0000269|PubMed:27574185}. 36051 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic (23S rRNA accumulation protein YCED) (Protein DUF177A) chloroplast [GO:0009507]; chloroplast nucleoid [GO:0042644]; ribosome biogenesis [GO:0042254] locus:2092266; AT3G19810 Uncharacterized ACR COG1399 Os02g0831200 protein,Os04g0108100 protein (Os04g0108300 protein) (Fragment) Q6K976,C7J1I6 Q6K976_ORYSJ,C7J1I6_ORYSJ Os02g0831200 OJ1149_C12.9 OsJ_08994 OSNPB_020831200,Os04g0108300 Os04g0108100 OSNPB_040108300 ENOG411E1QX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactose binding lectin domain NA NA NA NA NA NA NA ENOG411E1QU HISN2,AT-IE O82768,A0A1P8AUF5,A0A1P8AUE7 HIS2_ARATH,A0A1P8AUF5_ARATH,A0A1P8AUE7_ARATH Histidine biosynthesis bifunctional protein hisIE, chloroplastic (Protein HISTIDINE BIOSYNTHESIS 2) [Includes: Phosphoribosyl-AMP cyclohydrolase (PRA-CH) (EC 3.5.4.19); Phosphoribosyl-ATP pyrophosphatase (PRA-PH) (EC 3.6.1.31)],Histidine biosynthesis bifunctional protein (HISIE) Embryo defective; Gametophyte defective (inferred)-D. Meinke-2007 PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/9. {ECO:0000269|PubMed:9733547}.; PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9. {ECO:0000269|PubMed:9733547}. ARA:AT1G31860-MONOMER;MetaCyc:AT1G31860-MONOMER; 3.5.4.19; Biosynthesis of secondary metabolites (01110),Histidine metabolism (00340),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 3.5.4.19; 3.6.1.31 31668,22884,25137 Histidine biosynthesis bifunctional protein hisIE, chloroplastic (Protein HISTIDINE BIOSYNTHESIS 2) [Includes: Phosphoribosyl-AMP cyclohydrolase (PRA-CH) (EC 3.5.4.19); Phosphoribosyl-ATP pyrophosphatase (PRA-PH) (EC 3.6.1.31)],Histidine biosynthesis bifunctional protein (HISIE) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; phosphoribosyl-AMP cyclohydrolase activity [GO:0004635]; phosphoribosyl-ATP diphosphatase activity [GO:0004636]; histidine biosynthetic process [GO:0000105],phosphoribosyl-AMP cyclohydrolase activity [GO:0004635]; phosphoribosyl-ATP diphosphatase activity [GO:0004636]; histidine biosynthetic process [GO:0000105],phosphoribosyl-AMP cyclohydrolase activity [GO:0004635]; histidine biosynthetic process [GO:0000105] TISSUE SPECIFICITY: Ubiquitously expressed throughout development. {ECO:0000269|PubMed:9733547}. locus:2034516; AT1G31860 Histidine biosynthesis bifunctional protein hisIE Os01g0276500 protein (Putative phosphoribosyl-ATP pyrophosphohydrolase At-IE) (cDNA clone:006-203-G09, full insert sequence) Q5NBQ1 Q5NBQ1_ORYSJ Os01g0276500 OsJ_01288 OSNPB_010276500 P0038F12.23 ENOG411E1QT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1QW O64573 O64573_ARATH AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (Uncharacterized protein At2g19400) 60659 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (Uncharacterized protein At2g19400) intracellular [GO:0005622]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105] locus:2047590; AT2G19400 Protein kinase C terminal domain NA NA NA NA NA NA NA ENOG411E1QV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0671300 protein (cDNA clone:002-121-E03, full insert sequence) Q0DYS4 Q0DYS4_ORYSJ Os02g0671300 Os02g0671300 OSNPB_020671300 ENOG411E1QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Stage II sporulation protein E (SpoIIE) NA NA NA NA NA NA NA ENOG411E1QP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os05g0316800 protein (cDNA clone:002-168-H06, full insert sequence) Q5W6X0 Q5W6X0_ORYSJ Os05g0316800 OSJNBa0065C11.6 OSNPB_050316800 ENOG411E1QS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os07g0521600 protein (Fragment),Os07g0521100 protein (Fragment),Os07g0521600 protein (Putative resistance complex protein I2C-1) (cDNA clone:J013003D09, full insert sequence),Os07g0521300 protein (Fragment) Q0D5Z8,Q0D602,Q84ZR6,Q0D601 Q0D5Z8_ORYSJ,Q0D602_ORYSJ,Q84ZR6_ORYSJ,Q0D601_ORYSJ Os07g0521600 Os07g0521600 OSNPB_070521600,Os07g0521100 Os07g0521100 OSNPB_070521100,OJ1372_D12.104 OJ1657_A07.115 Os07g0521600 OsJ_24485 OSNPB_070521600,Os07g0521300 Os07g0521300 OSNPB_070521300 ENOG411E1QR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mob1/phocein family Os03g0409400 protein (Fragment) A0A0P0VYL4 A0A0P0VYL4_ORYSJ Os03g0409400 OSNPB_030409400 ENOG411E1QN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Saposin-like type B region 2 Os01g0631900 protein A0A0P0V5L9 A0A0P0V5L9_ORYSJ Os01g0631900 OSNPB_010631900 ENOG411E1QI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transporter activity Probable aquaporin TIP4-2 (Tonoplast intrinsic protein 4-2) (OsTIP4;2) Q9LWR0 TIP42_ORYSJ TIP4-2 Os01g0232100 LOC_Os01g13130 P0431F01.26 FUNCTION: Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm (By similarity). {ECO:0000250}. ENOG411E1QH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PB1 domain NA NA NA NA NA NA NA ENOG411E1QK NAC019,NAC055,NAC072,RD26 Q9C932,Q9LDY8,Q93VY3,F4JIV0,F4JIU9 NAC19_ARATH,NAC55_ARATH,NAC72_ARATH,F4JIV0_ARATH,F4JIU9_ARATH NAC domain-containing protein 19 (ANAC019) (Abscisic-acid-responsive NAC) (ANAC),NAC domain-containing protein 55 (ANAC055) (NAC domain-containing protein 3) (AtNAC3),NAC domain-containing protein 72 (ANAC072) (Protein RESPONSIVE TO DESICCATION 26),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Susceptible to bacterial infection-R. Cameron-2009 FUNCTION: Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. 35815,35405,33177,17999,35146 NAC domain-containing protein 19 (ANAC019) (Abscisic-acid-responsive NAC) (ANAC),NAC domain-containing protein 55 (ANAC055) (NAC domain-containing protein 3) (AtNAC3),NAC domain-containing protein 72 (ANAC072) (Protein RESPONSIVE TO DESICCATION 26),NAC (No Apical Meristem) domain transcriptional regulator superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; jasmonic acid mediated signaling pathway [GO:0009867]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; response to abscisic acid [GO:0009737]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in stems, flowers, cauline leaves and rosettes. {ECO:0000269|PubMed:12646039, ECO:0000269|PubMed:15319476}.,TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15319476}.,TISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}. locus:2011531;,locus:2090176;,locus:2124014; AT1G52890,AT3G15500,AT4G27410 nac domain NA NA NA NA NA NA NA ENOG411E1QE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os09g0365300 protein (Putative NBS-LRR protein) (cDNA clone:001-116-D01, full insert sequence),NB-ARC domain containing protein, expressed (Os12g0489800 protein) (cDNA clone:J033092D07, full insert sequence),OSJNBa0069D17.8 protein (Os04g0374000 protein),Os02g0281200 protein (Putative NBS-LRR type disease resistance protein RPG1-B),Os02g0282000 protein (Putative disease resistance protein I2),Os09g0365000 protein,Os02g0281200 protein (Fragment),Os04g0375600 protein,Os04g0375300 protein,Os02g0282500 protein Q69QG7,Q2QQL8,Q7XVK6,Q6K3D1,Q6K3C7,A0A0P0XL91,A0A0N7KF37,A0A0P0W9X5,A0A0P0W974,A0A0P0VHP6 Q69QG7_ORYSJ,Q2QQL8_ORYSJ,Q7XVK6_ORYSJ,Q6K3D1_ORYSJ,Q6K3C7_ORYSJ,A0A0P0XL91_ORYSJ,A0A0N7KF37_ORYSJ,A0A0P0W9X5_ORYSJ,A0A0P0W974_ORYSJ,A0A0P0VHP6_ORYSJ Os09g0365300 Os09g0365300 OSNPB_090365300 P0441A12.16,LOC_Os12g30590 Os12g0489800 OSNPB_120489800,Os04g0374000 OsJ_14483 OSJNBa0069D17.8 OSNPB_040374000,Os02g0281200 Os02g0281200 OSJNBa0063E14.6 OSNPB_020281200 P0669G10.23,Os02g0282000 OSJNBa0063E14.20 OSNPB_020282000,Os09g0365000 OSNPB_090365000,Os02g0281200 OSNPB_020281200,Os04g0375600 OSNPB_040375600,Os04g0375300 OSNPB_040375300,Os02g0282500 OSNPB_020282500 ENOG411E1QD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Helix-loop-helix DNA-binding domain Os09g0487900 protein,Os08g0506700 protein (Putative transcription factor RAU1) (cDNA clone:J023004M08, full insert sequence) Q0J0Q4,Q6Z3R6 Q0J0Q4_ORYSJ,Q6Z3R6_ORYSJ Os09g0487900 OSNPB_090487900,Os08g0506700 Os08g0506700 OsJ_27873 OSJNBa0025J22.40 OSNPB_080506700 ENOG411E1QG YSL1 Q6R3L0 YSL1_ARATH Metal-nicotianamine transporter YSL1 (Protein YELLOW STRIPE LIKE 1) (AtYSL1) DISRUPTION PHENOTYPE: Plants do not show visible phenotype, but a decreased iron and nicotianamine content in seeds resulting in a transient defect in germination. {ECO:0000269|PubMed:16297069, ECO:0000269|PubMed:16815956}. Overall morphology of the mutant plants was not altered. Increased accumulation of nicotianamine was detected in shoots while seeds of both ysl1 knockouts contained less iron and nicotianamine than wild-type seeds even when produced by plants grown in the presence of an excess of iron. Mutant seeds germinated slowly but this defect was rescued by an iron supply Low iron and nicotianamine levels in seeds; Elevated nicotianamine levels in shoots-C. Curie-2005 FUNCTION: Involved in iron loading of the seeds. Acts probably as a transporter of iron- and metal-nicotianamine chelates. {ECO:0000269|PubMed:16297069, ECO:0000269|PubMed:16815956}. 74392 Metal-nicotianamine transporter YSL1 (Protein YELLOW STRIPE LIKE 1) (AtYSL1) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; developmental process involved in reproduction [GO:0003006]; ion transport [GO:0006811]; iron ion homeostasis [GO:0055072]; response to iron ion [GO:0010039]; seed development [GO:0048316]; transmembrane transport [GO:0055085] DEVELOPMENTAL STAGE: Highly expressed during leaf senescence. {ECO:0000269|PubMed:16815956}. TISSUE SPECIFICITY: Low levels of expression in leaves and shoots, but not detected in roots. Restricted to the vasculature, in the xylem parenchyma surrounding xylem tubes. Expressed in pollen grains, in the vasculature of petals and sepals, in the carpel veins, in the style underneath the stigmatic papillae, in the vascular tissue of the funiculus and in the chalazal endosperm. {ECO:0000269|PubMed:13129917, ECO:0000269|PubMed:16297069, ECO:0000269|PubMed:16815956}. locus:2134956; AT4G24120 transporter NA NA NA NA NA NA NA ENOG411E1QA TAA1 Q9S7N2 TAA1_ARATH L-tryptophan--pyruvate aminotransferase 1 (EC 2.6.1.27) (EC 2.6.1.99) (Protein CYTOKININ INDUCED ROOT CURLING 1) (Protein SHADE AVOIDANCE 3) (Protein TRANSPORT INHIBITOR RESPONSE 2) (Protein TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) (Protein WEAK ETHYLENE INSENSITIVE 8) (Tryptophan transaminase) DISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but exhibits reduced levels of auxin (IAA), reduced auxin response, reduced sensitivity to ethylene and shorter hypocotyls and petioles but larger leaf area when grown in simulated shade. Defective in root gravitropic response and shows an increased resistance to cytokinin in primary root growth. {ECO:0000269|PubMed:18394996, ECO:0000269|PubMed:18394997, ECO:0000269|PubMed:19625638, ECO:0000269|PubMed:21255165}. These mutants have shorter hypocotyls than wild-type plants when grown in low R:FR ratio light. sav3-1 mutants are shorter and have reduced leaf hyponasty compared to wild type plants when both are subjected to supplementary far red light. Shade-induced expression of IAA19 and IAA29 is reduced in this mutant compared to wild-type plants.,These mutants have shorter hypocotyls shorter petioles and more leaf area than wild-type plants when grown in low R:FR ratio light. They mutants have 60% of the free auxin normally found in wild-type mutants with a marked reduction in IAA synthesis rate under shade conditions. Microarray experiments indicate that following shade treatment the sav3-2 mutant has 66 genes that are expressed at a lower level than in WT plants. Shade-induced expression of IAA19 and IAA29 is reduced in this mutant compared to wild-type plants but the wild-type expression level can be restored with 1 uM IAA.,These mutants have shorter hypocotyls than wild-type plants when grown in low R:FR ratio light. Shade-induced expression of IAA19 and IAA29 is reduced in this mutant compared to wild-type plants.,The hypocotyl of this mutant responds normally to ACC when grown in the dark but its roots are moderately less sensitive to ACC than wild type seedlings grown under the same conditions. This difference in sensitivity can be eliminated when the mutants are treated with ACC and low levels of IAA. wei8-1 and wild type hypocotyls and roots respond similarly to IAA in the absence of ACC. The roots of wei8-1 mutant seedlings do not display proper gravitropism. High-temperature mediated hypocotyl elongation is reduced by ~25% in these mutants compared to wild-type seedlings.,These triple mutants do not make a primary root they have an extremely reduced hypocotyl and they lack discernible vasculature in their cotyledons. These mutants have a higher propensity to develop a single cotyledon than wild-type embryos.,The roots of this mutant show almost no sensitivity to the ethylene precursor ACC but sensitivity is largely restored by the addition of low levels of IAA (but not tryptophan). ACC-triggered dark-grown apical hook formation is also compromised in this mutant and it is not restored by the addition of IAA. Root gravitropism is more disrupted in this double mutant than in either single mutant. The mutant plants are shorter than wild type have reduced venation in their leaves exhibit reduced apical dominance and produce abnormal flowers. DR5:GUS expression is also diminished in these double mutants consistent with a ~50% reduction in IAA levels in these mutants. Root meristematic cells differentiate in this mutant leading to a loss of the stem cell niche and the cessation of root growth.,ACC-triggered dark-grown apical hook formation is compromised in this mutant. Root meristematic cells differentiate in this mutant leading to a loss of the stem cell niche and the cessation of root growth. This mutant also lacks valves in the gynoecia.,The hypocotyl of this mutant responds normally to ACC when grown in the dark but its roots are moderately less sensitive to ACC than wild type seedlings grown under the same conditions. This difference in sensitivity can be eliminated when the mutants are treated with ACC and low levels of IAA. wei8-2 and wild type hypocotyls and roots respond similarly to IAA in the absence of ACC. Few lateral roots; Reduced root gravitropism; Short root hairs; Resistant to NPA (inhibitor of polar auxin transport)-M. Estelle-2009 FUNCTION: L-tryptophan aminotransferase involved in auxin (IAA) biosynthesis. Can convert L-tryptophan and pyruvate to indole-3-pyruvic acid (IPA) and alanine. Catalyzes the first step in IPA branch of the auxin biosynthetic pathway. Required for auxin production to initiate multiple change in growth in response to environmental and developmental cues. It is also active with phenylalanine, tyrosine, leucine, alanine, methionine and glutamine. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches and required for shade avoidance. {ECO:0000269|PubMed:18394996, ECO:0000269|PubMed:18394997, ECO:0000269|PubMed:19625638, ECO:0000269|PubMed:22025724}. PATHWAY: Plant hormone metabolism; auxin biosynthesis. ARA:AT1G70560-MONOMER;MetaCyc:AT1G70560-MONOMER; 2.6.1.27;2.6.1.99; 2.6.1.27; 2.6.1.99 44801 L-tryptophan--pyruvate aminotransferase 1 (EC 2.6.1.27) (EC 2.6.1.99) (Protein CYTOKININ INDUCED ROOT CURLING 1) (Protein SHADE AVOIDANCE 3) (Protein TRANSPORT INHIBITOR RESPONSE 2) (Protein TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) (Protein WEAK ETHYLENE INSENSITIVE 8) (Tryptophan transaminase) cytoplasm [GO:0005737]; carbon-sulfur lyase activity [GO:0016846]; L-alanine:2-oxoglutarate aminotransferase activity [GO:0004021]; L-glutamine:2-oxoglutarate aminotransferase activity [GO:0080100]; L-leucine:2-oxoglutarate aminotransferase activity [GO:0050048]; L-methionine:2-oxoglutarate aminotransferase activity [GO:0080099]; L-phenylalanine:2-oxoglutarate aminotransferase activity [GO:0080130]; L-phenylalanine:pyruvate aminotransferase activity [GO:0047312]; L-tryptophan:2-oxoglutarate aminotransferase activity [GO:0050362]; L-tryptophan:pyruvate aminotransferase activity [GO:0080097]; L-tyrosine:2-oxoglutarate aminotransferase activity [GO:0004838]; L-tyrosine:pyruvate aminotransferase activity [GO:0080098]; pyridoxal phosphate binding [GO:0030170]; auxin polar transport [GO:0009926]; defense response to bacterium [GO:0042742]; flower development [GO:0009908]; gynoecium development [GO:0048467]; indoleacetic acid biosynthetic process [GO:0009684]; leaf development [GO:0048366]; maintenance of root meristem identity [GO:0010078]; phloem or xylem histogenesis [GO:0010087]; positive gravitropism [GO:0009958]; response to ethylene [GO:0009723]; root development [GO:0048364]; shade avoidance [GO:0009641]; shoot system development [GO:0048367] DEVELOPMENTAL STAGE: In the heart stage embryo, expressed in the developing vasculature and the apical epidermal layer. At the torpedo stage expressed in the developing vasculature of the root, hypocotyl and cotyledons, as well as in the L1 layer of the presumptive shoot apical meristem and the adaxial epidermis of the developing cotyledons. In flowers, the expression is first restricted to the central outer layers of flower primordia, but later expands toward the base of gynoecia, becoming limited to two cell files along the meristematic medial ridge. {ECO:0000269|PubMed:18394996, ECO:0000269|PubMed:19625638}. TISSUE SPECIFICITY: Expressed at the leaf margin and in the vasculature of emerging young leaves. Expressed in the quiescent center and in the vasculature of root tips. Detected in the shoot apical meristem, stems, sepals, stamen filaments, the shoot and root junction, the stigma and the base of the silique. {ECO:0000269|PubMed:18394996, ECO:0000269|PubMed:19625638, ECO:0000269|PubMed:21255165}. locus:2026826; AT1G70560 tryptophan aminotransferase NA NA NA NA NA NA NA ENOG411E1QB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dcp1-like decapping family Os07g0249600 protein (Putative transcription factor) (cDNA clone:001-037-A01, full insert sequence) (cDNA clone:J013100P19, full insert sequence),Os03g0837000 protein Q7XHS7,A0A0P0W5Y1 Q7XHS7_ORYSJ,A0A0P0W5Y1_ORYSJ P0021G06.113 Os07g0249600 OsJ_23714 OSNPB_070249600,Os03g0837000 OSNPB_030837000 ENOG411E1Q9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAS1 Os11g0111333 protein,Os02g0491300 protein (cDNA, clone: J065205O09, full insert sequence) A3C7W6,Q6K5Q2 A3C7W6_ORYSJ,Q6K5Q2_ORYSJ Os11g0111333 OsJ_32685 OSNPB_110111333,Os02g0491300 Os02g0491300 OsJ_06789 OSJNBa0048K16.31 OSNPB_020491300 P0579G08.7 ENOG411E1Q8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Os01g0208400 protein (cDNA clone:001-202-B10, full insert sequence) Q8LRI2 Q8LRI2_ORYSJ Os01g0208400 OsJ_00830 OSJNBa0016I09.19 OSNPB_010208400 ENOG411E1Q5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KISc NA NA NA NA NA NA NA ENOG411E1Q4 CYCU1-1 Q9LJ45 CCU11_ARATH Cyclin-U1-1 (CycU1;1) (Cyclin-P2.1) (CycP2;1) 23446 Cyclin-U1-1 (CycU1;1) (Cyclin-P2.1) (CycP2;1) protein kinase binding [GO:0019901]; cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] TISSUE SPECIFICITY: Expressed in roots and flowers. Expressed in the shoot apex, leaf primordia and young leaves. {ECO:0000269|PubMed:15197472}. locus:2088743; AT3G21870 regulation of cyclin-dependent protein serine/threonine kinase activity Cyclin-P1-1 (CycP1;1) Q0J9W0 CCP11_ORYSJ CYCP1-1 Os04g0628900 Os04g0628700 LOC_Os04g53680 OSJNBa0089N06.10 ENOG411E1Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Peroxidase Os04g0105850 protein,Os04g0105800 protein A0A0N7KIG3,A0A0P0W6E8 A0A0N7KIG3_ORYSJ,A0A0P0W6E8_ORYSJ Os04g0105850 OSNPB_040105850,Os04g0105800 OSNPB_040105800 ENOG411E1Q6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major intrinsic protein NA NA NA NA NA NA NA ENOG411E1Q1 FBL13 Q9FWZ1,Q9ZV94,Q9ZV93,F4IBU4 FBL13_ARATH,FDL11_ARATH,FDL10_ARATH,F4IBU4_ARATH F-box/LRR-repeat protein 13,Putative F-box/FBD/LRR-repeat protein At1g78760,F-box/FBD/LRR-repeat protein At1g78750,RNI-like superfamily protein 51718,51690,52428,32826 F-box/LRR-repeat protein 13,Putative F-box/FBD/LRR-repeat protein At1g78760,F-box/FBD/LRR-repeat protein At1g78750,RNI-like superfamily protein locus:2026761;,locus:2037558;,locus:2037578;,locus:2037588; AT1G69630,AT1G78760,AT1G78750,AT1G78740 F-box domain NA NA NA NA NA NA NA ENOG411E1Q3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor Os08g0386200 protein (Putative transcription factor WRKY5) (WRKY transcription factor) (cDNA clone:J013102P22, full insert sequence) Q6ZA22 Q6ZA22_ORYSJ Os08g0386200 Os08g0386200 OsJ_27157 OSNPB_080386200 P0434E03.6 ENOG411E60D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0858200 protein) Q84M67 Q84M67_ORYSJ LOC_Os03g64100 Os03g0858200 OSJNBa0059G06.9 OSNPB_030858200 ENOG411E60M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein Os01g0155100 protein Q94JD1 Q94JD1_ORYSJ Os01g0155100 OSNPB_010155100 P0011G08.14 P0030H07.56 ENOG411EBQ6 PER15,PER14 Q9SI16,Q9SI17 PER15_ARATH,PER14_ARATH Peroxidase 15 (Atperox P15) (EC 1.11.1.7) (ATP36),Peroxidase 14 (Atperox P14) (EC 1.11.1.7) FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT2G18150-MONOMER;,ARA:AT2G18140-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 37079,37204 Peroxidase 15 (Atperox P15) (EC 1.11.1.7) (ATP36),Peroxidase 14 (Atperox P14) (EC 1.11.1.7) cell wall [GO:0005618]; extracellular region [GO:0005576]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979] locus:2053129;,locus:2053139; AT2G18150,AT2G18140 Peroxidase NA NA NA NA NA NA NA ENOG411EBQ4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flavin-binding monooxygenase-like NA NA NA NA NA NA NA ENOG411EBQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0239400 protein,Os05g0239000 protein,Os08g0343100 protein,Os05g0239633 protein,Os08g0343200 protein A0A0N7KKE1,A0A0P0WJK8,A0A0P0XF95,A0A0P0WJW4,A0A0P0XFJ7 A0A0N7KKE1_ORYSJ,A0A0P0WJK8_ORYSJ,A0A0P0XF95_ORYSJ,A0A0P0WJW4_ORYSJ,A0A0P0XFJ7_ORYSJ Os05g0239400 OSNPB_050239400,Os05g0239000 OSNPB_050239000,Os08g0343100 OSNPB_080343100,Os05g0239633 OSNPB_050239633,Os08g0343200 OSNPB_080343200 ENOG411EBQ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family NA NA NA NA NA NA NA ENOG411EBQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 Os09g0564000 protein (Putative cysteine protease),Os09g0564200 protein,Os09g0564500 protein,Os09g0564900 protein,Os09g0564600 protein,Os09g0564400 protein,Os09g0564700 protein,Os09g0565100 protein,Os09g0565000 protein Q650Y5,A0A0P0XQE7,A0A0N7KRA0,A0A0P0XQX8,A0A0P0XQB7,A0A0P0XR37,A0A0P0XRA0,A0A0N7KRA1,A0A0P0XQH0 Q650Y5_ORYSJ,A0A0P0XQE7_ORYSJ,A0A0N7KRA0_ORYSJ,A0A0P0XQX8_ORYSJ,A0A0P0XQB7_ORYSJ,A0A0P0XR37_ORYSJ,A0A0P0XRA0_ORYSJ,A0A0N7KRA1_ORYSJ,A0A0P0XQH0_ORYSJ Os09g0564000 OSJNBa0042B15.10 OSNPB_090564000,Os09g0564200 OSNPB_090564200,Os09g0564500 OSNPB_090564500,Os09g0564900 OSNPB_090564900,Os09g0564600 OSNPB_090564600,Os09g0564400 OSNPB_090564400,Os09g0564700 OSNPB_090564700,Os09g0565100 OSNPB_090565100,Os09g0565000 OSNPB_090565000 ENOG411EBQ0 Q9T0K3 Q9T0K3_ARATH At4g13320 (Uncharacterized protein AT4g13320) 25237 At4g13320 (Uncharacterized protein AT4g13320) locus:2142085; AT4G13320 Retrotransposon protein Os02g0522300 protein (Fragment) A0A0P0VJQ1 A0A0P0VJQ1_ORYSJ Os02g0522300 OSNPB_020522300 ENOG411EBQ8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of chromosome condensation (RCC1) repeat NA NA NA NA NA NA NA ENOG411EBQ9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Putrescine hydroxycinnamoyltransferase 3 (OsPHT3) (EC 2.3.1.-) Q7XXN5 PHT3_ORYSJ PHT3 Os09g0543900 LOC_Os09g37180 P0705E11.3 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to putrescine, to produce coumaroyl putrescine. Can use feruloyl-CoA and caffeoyl-CoA as acyl donors. {ECO:0000269|PubMed:27354554}. ENOG411EBQV DOF4.7 Q84K52 DOF47_ARATH Dof zinc finger protein DOF4.7 (AtDOF4.7) (Protein DNA BINDING WITH ONE FINGER 4.7) FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Involved in the negative regulation of floral organ abscission by binding to the typical DOF 5'-AAAG-3' sequences in the promoter of ADPG2/PGAZAT, and by down-regulating its expression. ADPG2/PGAZAT is an abscission-related and cell wall hydrolyzing polygalacturonase. May act through the interaction with ZFP2, an abscission-related transcription factor. {ECO:0000269|PubMed:20466844}. MISCELLANEOUS: Plants over-expressing DOF4.7 fail in the abscission of floral organs (sepals, petals and stamens) after anthesis. {ECO:0000269|PubMed:20466844}. 27394 Dof zinc finger protein DOF4.7 (AtDOF4.7) (Protein DNA BINDING WITH ONE FINGER 4.7) nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; floral organ abscission [GO:0010227]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Highly expressed at the base of all organs of the flower, especially in the abscission zone (AZ) of petals, stamens and sepals. Expressed at low levels in sepals, filaments, stigmatic papillae, tips of young siliques, and at the base of pedicels and leaf trichomes. {ECO:0000269|PubMed:20466844}. locus:2121041; AT4G38000 zinc finger NA NA NA NA NA NA NA ENOG411EBQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411EBQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EBQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucine rich repeat N-terminal domain Os05g0491400 protein Q6F336 Q6F336_ORYSJ Os05g0491400 OsJ_19027 OSJNBa0088I06.11 OSNPB_050491400 ENOG411EBQZ CYP71B20,CYP71B19 Q9LTM3,Q9LTM4,F4JBF0 C71BK_ARATH,C71BJ_ARATH,F4JBF0_ARATH Cytochrome P450 71B20 (EC 1.14.-.-),Cytochrome P450 71B19 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 20 ARA:AT3G26180-MONOMER;,ARA:AT3G26170-MONOMER; 1.14.-.- 57416,57519,41706 Cytochrome P450 71B20 (EC 1.14.-.-),Cytochrome P450 71B19 (EC 1.14.-.-),Cytochrome P450, family 71, subfamily B, polypeptide 20 integral component of membrane [GO:0016021]; membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] locus:2093516;,locus:2093511; AT3G26180,AT3G26170 monooxygenase activity NA NA NA NA NA NA NA ENOG411EBQX Q8GX62 Q8GX62_ARATH At5g19920 (Putative TipD like WD repeat protein) (Transducin/WD40 repeat-like superfamily protein) 74056 At5g19920 (Putative TipD like WD repeat protein) (Transducin/WD40 repeat-like superfamily protein) locus:2147690; AT5G19920 Transducin family protein WD-40 repeat family NA NA NA NA NA NA NA ENOG411EBQY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-2 like Rad60 SUMO-like NA NA NA NA NA NA NA ENOG411EBQF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1719 NA NA NA NA NA NA NA ENOG411EBQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CCT motif NA NA NA NA NA NA NA ENOG411EBQE O81749 O81749_ARATH ROH1, putative (DUF793) (Uncharacterized protein AT4g23530) (Uncharacterized protein F16G20.230) 44164 ROH1, putative (DUF793) (Uncharacterized protein AT4g23530) (Uncharacterized protein F16G20.230) locus:2117984; AT4G23530 Protein of unknown function (DUF793) NA NA NA NA NA NA NA ENOG411EBQC MOK9.17 Q6DYE3,Q9FJA3 Q6DYE3_ARATH,Q9FJA3_ARATH Myb/SANT-like DNA-binding domain protein,Transmembrane protein 25622,21804 Myb/SANT-like DNA-binding domain protein,Transmembrane protein DNA binding [GO:0003677],integral component of membrane [GO:0016021] locus:2202466;,locus:2169528; AT1G30140,AT5G35540 Inherit from KOG: transposon protein NA NA NA NA NA NA NA ENOG411EBQA Q5XVB9 Q5XVB9_ARATH Plant self-incompatibility protein S1 family protein 19536 Plant self-incompatibility protein S1 family protein locus:2093312; AT3G15860 Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EBQN Q0WQM8,Q9C725,Q9SA01,Q3ECR3,Q9MAG5,Q9C948,B3H7F2 FB58_ARATH,FB61_ARATH,FB25_ARATH,FB305_ARATH,FB56_ARATH,FB70_ARATH,B3H7F2_ARATH F-box protein At1g53790,Putative F-box protein At1g55070,Putative F-box protein At1g31072,Putative F-box protein At1g53360,Putative F-box protein At1g53370,Putative F-box protein At1g61060,F-box and associated interaction domains-containing protein 51030,45541,22315,45097,42991,30654,53034 F-box protein At1g53790,Putative F-box protein At1g55070,Putative F-box protein At1g31072,Putative F-box protein At1g53360,Putative F-box protein At1g53370,Putative F-box protein At1g61060,F-box and associated interaction domains-containing protein cell wall [GO:0005618] locus:2205657;,locus:2206021;,locus:2197021; AT1G53790,AT1G55070,AT1G31072,AT1G53360,AT1G53370,AT1G61060 F-box family protein-related NA NA NA NA NA NA NA ENOG411EBQM F9D24.230 Q9M2H2,Q9M2I4 MCC31_ARATH,Q9M2I4_ARATH MATH domain and coiled-coil domain-containing protein At3g58440 (RTM3-like protein At3g58440),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein F9D24.230) 40770,25712 MATH domain and coiled-coil domain-containing protein At3g58440 (RTM3-like protein At3g58440),Ubiquitin-specific protease family C19-related protein (Uncharacterized protein F9D24.230) peptidase activity [GO:0008233] locus:2076366;,locus:2085330; AT3G58440,AT3G58320 meprin and TRAF homology domain-containing protein MATH domain-containing protein NA NA NA NA NA NA NA ENOG411EBQJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exo70 exocyst complex subunit Os04g0685500 protein (Fragment) A0A0P0WGJ1,A0A0P0WGY2 A0A0P0WGJ1_ORYSJ,A0A0P0WGY2_ORYSJ Os04g0685500 OSNPB_040685500 ENOG411EBQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MBOAT membrane-bound O-acyltransferase family Os07g0540000 protein A0A0P0X797 A0A0P0X797_ORYSJ Os07g0540000 OSNPB_070540000 ENOG411EBQH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ankyrin repeat NA NA NA NA NA NA NA ENOG411EBQI GYRB3 Q8VY11,A0A1P8BB88,A0A1P8BB70 Q8VY11_ARATH,A0A1P8BB88_ARATH,A0A1P8BB70_ARATH DNA GYRASE B3 (MYB transcription factor) (Putative DNA gyrase subunit B) (Uncharacterized protein At5g04110),DNA GYRASE B3 FUNCTION: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. {ECO:0000256|RuleBase:RU362094}. 60937,61065,56194 DNA GYRASE B3 (MYB transcription factor) (Putative DNA gyrase subunit B) (Uncharacterized protein At5g04110),DNA GYRASE B3 nucleoid [GO:0009295]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; chromosome segregation [GO:0007059]; DNA topological change [GO:0006265],ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase type II (ATP-hydrolyzing) activity [GO:0003918]; DNA topological change [GO:0006265] locus:2146658; AT5G04110 DNA gyrase B NA NA NA NA NA NA NA ENOG411EM0Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EGBB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inhibitor_I29 NA NA NA NA NA NA NA ENOG411EGBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA 3'-terminal phosphate cyclase NA NA NA NA NA NA NA ENOG411EGBA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411EGBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tryptophan/tyrosine permease family NA NA NA NA NA NA NA ENOG411EGBG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGBD F4K3K4 F4K3K4_ARATH Oleosin family protein 32301 Oleosin family protein extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915]; sexual reproduction [GO:0019953] locus:2151606; AT5G61610 Oleosin NA NA NA NA NA NA NA ENOG411EGBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protease inhibitor/seed storage/LTP family NA NA NA NA NA NA NA ENOG411EGBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UBQ NA NA NA NA NA NA NA ENOG411EGBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0477100 protein Q0DHC0 Q0DHC0_ORYSJ Os05g0477100 Os05g0477100 OSNPB_050477100 ENOG411EGBH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chromosome segregation HEC-related protein NA NA NA NA NA NA NA ENOG411EGBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CG-1 domain NA NA NA NA NA NA NA ENOG411EGBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGBM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem II protein NA NA NA NA NA NA NA ENOG411EGBV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EGBU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CybS NA NA NA NA NA NA NA ENOG411EGB3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Di19 NA NA NA NA NA NA NA ENOG411EGB0 CYS3 Q41906 CYT3_ARATH Cysteine proteinase inhibitor 3 (AtCYS-3) FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. 14422 Cysteine proteinase inhibitor 3 (AtCYS-3) extracellular region [GO:0005576]; cysteine-type endopeptidase inhibitor activity [GO:0004869]; protease binding [GO:0002020]; defense response [GO:0006952]; hyperosmotic response [GO:0006972]; negative regulation of cysteine-type endopeptidase activity [GO:2000117]; response to cold [GO:0009409]; response to oxidative stress [GO:0006979]; response to water deprivation [GO:0009414] locus:2058515; AT2G40880 CY NA NA NA NA NA NA NA ENOG411EGB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: ribonuclease NA NA NA NA NA NA NA ENOG411EGB6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain NA NA NA NA NA NA NA ENOG411EGB7 O49644,Q1G3I0,B3H5X1 O49644_ARATH,Q1G3I0_ARATH,B3H5X1_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Predicted protein) (Uncharacterized protein AT4g22630),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 17730,16587,16530 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Predicted protein) (Uncharacterized protein AT4g22630),Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021],integral component of membrane [GO:0016021] locus:2127570;,locus:1009023377; AT4G22630,AT4G22666 NA NA NA NA NA NA NA NA ENOG411EGB4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PHD-finger NA NA NA NA NA NA NA ENOG411EGB5 Q6NLU6 Y1106_ARATH Uncharacterized protein At1g31060 11824 Uncharacterized protein At1g31060 AT1G31060 NA NA NA NA NA NA NA NA ENOG411EGB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF260 Os05g0123000 protein (Putatvie LOB domain protein) Q75L85 Q75L85_ORYSJ OJ1729_E02.9 Os05g0123000 OSNPB_050123000 ENOG411EGB9 MXF12.3 Q9FID7,F4JCI5,B3H4S8 Q9FID7_ARATH,F4JCI5_ARATH,B3H4S8_ARATH Uncharacterized protein 19475,18868,18273 Uncharacterized protein locus:2177207;,locus:2079231;,locus:4515102967; AT5G39010,AT3G26390,AT2G39782 NA NA NA NA NA NA NA NA ENOG411DTF9 F17O14.14 Q9C9Y9 Q9C9Y9_ARATH At3g08670 (Serine/arginine repetitive matrix-like protein) (Uncharacterized protein At3g08670) (Uncharacterized protein F17O14.14) 60139 At3g08670 (Serine/arginine repetitive matrix-like protein) (Uncharacterized protein At3g08670) (Uncharacterized protein F17O14.14) response to oxidative stress [GO:0006979] locus:2077883; AT3G08670 transposon protein Os05g0480600 protein (cDNA clone:J033094D02, full insert sequence),Gastric mucin-like protein (Os01g0819000 protein),Os01g0819000 protein (Fragment) Q75GL8,Q5QLZ3,A0A0P0V9R3 Q75GL8_ORYSJ,Q5QLZ3_ORYSJ,A0A0P0V9R3_ORYSJ Os05g0480600 Os05g0480600 OsJ_18945 OSJNBa0018K15.21 OSJNBa0095J22.2 OSNPB_050480600,P0454H12.39-1 Os01g0819000 OJ1529_G03.4-1 OsJ_03883 OSNPB_010819000,Os01g0819000 OSNPB_010819000 ENOG411DTF2 Q0V7V0,A0A1P8AVN8 Q0V7V0_ARATH,A0A1P8AVN8_ARATH At1g55280 (Lipase/lipooxygenase, PLAT/LH2 family protein),Lipase/lipooxygenase, PLAT/LH2 family protein 43301,48280 At1g55280 (Lipase/lipooxygenase, PLAT/LH2 family protein),Lipase/lipooxygenase, PLAT/LH2 family protein integral component of membrane [GO:0016021] locus:2035681; AT1G55280 NA Expressed protein (Os11g0491400 protein) (cDNA clone:J013149K10, full insert sequence) Q2R429 Q2R429_ORYSJ LOC_Os11g29900 Os11g0491400 OsJ_33931 OSNPB_110491400 ENOG411DTF0 MJK13.13 Q9FK21,Q9LDG7 Q9FK21_ARATH,Q9LDG7_ARATH Similarity to WD-containing protein (Transducin/WD40 repeat-like superfamily protein),AT3g15470/MJK13_13 (MJK13.13 protein) (Transducin/WD40 repeat-like superfamily protein) (WD-40 repeat protein-like) 93022,97414 Similarity to WD-containing protein (Transducin/WD40 repeat-like superfamily protein),AT3g15470/MJK13_13 (MJK13.13 protein) (Transducin/WD40 repeat-like superfamily protein) (WD-40 repeat protein-like) locus:2153443;,locus:2090146; AT5G54200,AT3G15470 WD-40 repeat family protein Os02g0638900 protein (Fragment),Os04g0529400 protein A0A0P0VM92,A0A0P0VMF2,A0A0P0WCX9 A0A0P0VM92_ORYSJ,A0A0P0VMF2_ORYSJ,A0A0P0WCX9_ORYSJ Os02g0638900 OSNPB_020638900,Os04g0529400 OSNPB_040529400 ENOG411DTF6 A1A6K7,Q0WP38,Q8GYU4,A0A1P8B5X4,A0A1P8B5V8,A0A1P8B5X6,F4K678 A1A6K7_ARATH,Q0WP38_ARATH,Q8GYU4_ARATH,A0A1P8B5X4_ARATH,A0A1P8B5V8_ARATH,A0A1P8B5X6_ARATH,F4K678_ARATH At5g49710 (RING finger protein),RING finger protein (Uncharacterized protein At5g49710),RING finger protein (Uncharacterized protein At4g24590/F22K18_210),RING finger protein 26401,26530,27044,19243,27562,21125,22239 At5g49710 (RING finger protein),RING finger protein (Uncharacterized protein At5g49710),RING finger protein (Uncharacterized protein At4g24590/F22K18_210),RING finger protein locus:2157017;,locus:2121875; AT5G49710,AT4G24590 NA MADS box interactor-like (Os02g0781700 protein),Os02g0781700 protein (Fragment) Q6K818,A0A0P0VQK1 Q6K818_ORYSJ,A0A0P0VQK1_ORYSJ OJ1369_G08.12-2 Os02g0781700 OSNPB_020781700,Os02g0781700 OSNPB_020781700 ENOG411DTF7 BHLH30 Q9S7Y1 BH030_ARATH Transcription factor bHLH30 (Basic helix-loop-helix protein 30) (AtbHLH30) (bHLH 30) (Transcription factor EN 53) (bHLH transcription factor bHLH030) 40825 Transcription factor bHLH30 (Basic helix-loop-helix protein 30) (AtbHLH30) (bHLH 30) (Transcription factor EN 53) (bHLH transcription factor bHLH030) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2012393; AT1G68810 transcription factor Helix-loop-helix DNA-binding domain containing protein, expressed (Os03g0260600 protein) Q10NS6 Q10NS6_ORYSJ LOC_Os03g15440 Os03g0260600 OsJ_10212 OSNPB_030260600 ENOG411DTF4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Galactosyltransferase Hexosyltransferase (EC 2.4.1.-) Q69PI3,Q6K8V2,A0A0P0VQM9 Q69PI3_ORYSJ,Q6K8V2_ORYSJ,A0A0P0VQM9_ORYSJ OJ1081_G10.10 Os09g0433500 OSNPB_090433500,Os02g0785700 OJ1316_E06.1 OJ1715_H01.38 OSNPB_020785700,Os02g0785200 OSNPB_020785200 ENOG411DTF5 HSK Q8L7R2,F4JMB5 KHSE_ARATH,F4JMB5_ARATH Homoserine kinase (EC 2.7.1.39) (Protein DOWNY MILDEW RESISTANT 1),Homoserine kinase, putative / HSK DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plant accumulate homoserine and show reduced susceptibility to the downy mildew pathogen Hyaloperonospora parasitica. {ECO:0000269|PubMed:15703056, ECO:0000269|PubMed:15986928, ECO:0000269|PubMed:19622802}. Resistant to downy mildew; Susceptible to other pathogens-G. Ackerveken-2009 FUNCTION: Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate. Is specific for L-homoserine and cannot use other substrates such D-serine, L-serine, D-threonine and L-threonine, galactose or D-homoserine in vitro. Required for susceptibility to the downy mildew pathogen Hyaloperonospora parasitica. {ECO:0000269|PubMed:10562426, ECO:0000269|PubMed:15703056, ECO:0000269|PubMed:15986928, ECO:0000269|PubMed:19622802}. PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 4/5. MetaCyc:MONOMER-1961; 2.7.1.39; Microbial metabolism in diverse environments (01120),Biosynthesis of amino acids (01230),Glycine, serine and threonine metabolism (00260),Metabolic pathways (01100) 2.7.1.39 38529,12141 Homoserine kinase (EC 2.7.1.39) (Protein DOWNY MILDEW RESISTANT 1),Homoserine kinase, putative / HSK chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; ATP binding [GO:0005524]; homoserine kinase activity [GO:0004413]; defense response [GO:0006952]; homoserine metabolic process [GO:0009092]; methionine biosynthetic process [GO:0009086]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; threonine biosynthetic process [GO:0009088],kinase activity [GO:0016301] locus:2827533;,locus:504955502; AT2G17265,AT4G35295 homoserine kinase Os02g0831800 protein (Putative homoserine kinase) (cDNA clone:001-020-B10, full insert sequence) Q6K969 Q6K969_ORYSJ Os02g0831800 OJ1149_C12.16 OSNPB_020831800 ENOG411DTFY TRZ2 Q8L633 RNZ2_ARATH tRNase Z TRZ2, chloroplastic (EC 3.1.26.11) (Chloroplast ribonuclease Z) (Chloroplast RNase Z) (Short tRNase Z 2) (Zinc phosphodiesterase CPZ) (tRNA 3 endonuclease) (tRNase ZS2) (AthTRZS2) DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:19411372}. Embryo defective; Globular-A. Marchfelder-2009 FUNCTION: Zinc phosphodiesterase, which displays tRNA 3'-processing endonuclease activity. Involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. {ECO:0000269|PubMed:12032089, ECO:0000269|PubMed:19411372}. 3.1.26.11; 3.1.26.11 39951 tRNase Z TRZ2, chloroplastic (EC 3.1.26.11) (Chloroplast ribonuclease Z) (Chloroplast RNase Z) (Short tRNase Z 2) (Zinc phosphodiesterase CPZ) (tRNA 3 endonuclease) (tRNase ZS2) (AthTRZS2) chloroplast [GO:0009507]; 3'-tRNA processing endoribonuclease activity [GO:0042781]; metal ion binding [GO:0046872]; tRNA 3'-end processing [GO:0042780]; tRNA processing [GO:0008033] TISSUE SPECIFICITY: Highly expressed in green and actively dividing tissues. {ECO:0000305|PubMed:19411372}. locus:2058374; AT2G04530 Ribonuclease z Os09g0482680 protein (cDNA clone:J023066C10, full insert sequence) B7EIC7 B7EIC7_ORYSJ Os09g0482680 Os09g0482680 OSNPB_090482680 ENOG411DTFR F4IYK6 F4IYK6_ARATH ARM repeat superfamily protein 113974 ARM repeat superfamily protein cytosol [GO:0005829]; nuclear envelope [GO:0005635]; protein transporter activity [GO:0008565]; Ran GTPase binding [GO:0008536]; transcription factor import into nucleus [GO:0042991] locus:2097658; AT3G08960 Importin-beta N-terminal domain Os03g0292900 protein,Os07g0693400 protein A0A0P0VWC2,A0A0P0XAX7 A0A0P0VWC2_ORYSJ,A0A0P0XAX7_ORYSJ Os03g0292900 OSNPB_030292900,Os07g0693400 OSNPB_070693400 ENOG411DTFP AtHBP1,T30F21.21 Q9SHG8,Q9SYN6 Q9SHG8_ARATH,Q9SYN6_ARATH At1g17100 (SOUL heme-binding family protein) (SOUL-like protein) (Similar to SOUL Protein),F3F9.4 (SOUL heme-binding family protein) (T30F21.21 protein) R-ATH-6798695; 25388,25338 At1g17100 (SOUL heme-binding family protein) (SOUL-like protein) (Similar to SOUL Protein),F3F9.4 (SOUL heme-binding family protein) (T30F21.21 protein) vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; heme binding [GO:0020037] locus:2020307;,locus:2032065; AT1G17100,AT1G78450 heme-binding protein Os01g0210500 protein (Putative heme binding protein 2) (cDNA clone:001-027-A02, full insert sequence) (cDNA clone:J013136I24, full insert sequence) (cDNA clone:J023108G02, full insert sequence) Q9LD82 Q9LD82_ORYSJ Os01g0210500 OsJ_00844 OSNPB_010210500 P0031E09.13 P0466B10.23 ENOG411DTFQ HSP90-7,SHD Q9STX5,F4JQ55 ENPL_ARATH,F4JQ55_ARATH Endoplasmin homolog (Glucose-regulated protein 94 homolog) (GRP-94 homolog) (Heat shock protein 90-7) (AtHSP90.7) (AtHsp90-7) (Protein SHEPHERD),Chaperone protein htpG family protein Male gametophyte defective; Homozygotes are viable: Short roots; Increased lateral root and carpel number; Thick pistils; Large SAM-K. Okada-2002 FUNCTION: May have a molecular chaperone role in the processing of secreted materials. Required for shoot apical meristem (SAM), root apical meristem (RAM) and floral meristem (FM) formation, probably by regulating the folding of CLAVATA proteins (CLVs). Also involved in pollen tube elongation (PubMed:11867518). Involved in resistance to tunicamycin- or high calcium-induced ER stresses. Possesses ATPase activity (PubMed:25297550). {ECO:0000269|PubMed:11867518, ECO:0000269|PubMed:25297550}. 94204,94149 Endoplasmin homolog (Glucose-regulated protein 94 homolog) (GRP-94 homolog) (Heat shock protein 90-7) (AtHSP90.7) (AtHsp90-7) (Protein SHEPHERD),Chaperone protein htpG family protein apoplast [GO:0048046]; chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; protein secretion [GO:0009306]; regulation of meristem growth [GO:0010075]; regulation of meristem structural organization [GO:0009934]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to endoplasmic reticulum stress [GO:0034976]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414],ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457]; response to stress [GO:0006950] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11867518}. locus:2135887; AT4G24190 Heat Shock Protein 90 kDa heat shock protein (Heat shock protein 90) (Os06g0716700 protein),Os06g0716700 protein (Fragment) Q5Z9N8,A0A0P0X0X9,A0A0P0X159 Q5Z9N8_ORYSJ,A0A0P0X0X9_ORYSJ,A0A0P0X159_ORYSJ Os06g0716700 OSNPB_060716700 P0481E08.35 P0541C02.2,Os06g0716700 OSNPB_060716700 ENOG411DTFW KIN14B,KIN14A,KAC2 Q9FKP4,Q9LX99,A0A1P8BDP7,A0A1P8BDP2,A0A1P8BDS9,A0A1P8BDQ0,A0A1P8BDN5 KN14B_ARATH,KN14A_ARATH,A0A1P8BDP7_ARATH,A0A1P8BDP2_ARATH,A0A1P8BDS9_ARATH,A0A1P8BDQ0_ARATH,A0A1P8BDN5_ARATH Kinesin-like protein KIN-14B (Kinesin CDKA-1-associated protein 2) (Kinesin-like protein KCA2) (Kinesin-like protein for actin-based chloroplast movement 2),Kinesin-like protein KIN-14A (Geminivirus Rep-interacting motor protein) (Geminivirus replication protein-interacting protein) (Kinesin CDKA-1-associated protein 1) (Kinesin-like protein KCA1) (Kinesin-like protein for actin-based chloroplast movement 1),Kinesin like protein for actin based chloroplast movement 2 DISRUPTION PHENOTYPE: Impaired chloroplast accumulation and slow avoidance movement under strong blue light (PubMed:20418504). Double mutant kac1kac2 exhibits an increase in leaf transmittance and a partial defect in nuclear avoidance response under strong blue light exposure (PubMed:27310016). {ECO:0000269|PubMed:20418504, ECO:0000269|PubMed:27310016}. Defective in chloroplast accumulation in response to low light and chloroplast relocation under high light. Severely reduced chloroplast movement-M. Wada-2010 FUNCTION: Kinesin-like protein required for chloroplast movements and anchor to the plasma membrane. Mediates chloroplast movement via chloroplast actin (cp-actin) filaments. Required for the chloroplast avoidance response under high intensity blue light. Mediates redundantly with CHUP1 the nuclear avoidance response under high intensity blue light (PubMed:27310016). May be involved in division plane determination (Probable). {ECO:0000250|UniProtKB:Q9LX99, ECO:0000269|PubMed:20418504, ECO:0000269|PubMed:27310016}.,FUNCTION: Kinesin-like protein required for chloroplast movements and anchor to the plasma membrane. Mediates chloroplast movement via chloroplast actin (cp-actin) filaments. Required for the chloroplast avoidance response under high intensity blue light (PubMed:20418504, PubMed:27310016). Mediates redundantly with CHUP1 the nuclear avoidance response under high intensity blue light (PubMed:27310016). May act as a mitotic kinesin (PubMed:15247388). Probably involved in division plane determination (PubMed:16461285). {ECO:0000269|PubMed:15247388, ECO:0000269|PubMed:16461285, ECO:0000269|PubMed:20418504, ECO:0000269|PubMed:27310016}. ARA:GQT-318-MONOMER;,ARA:GQT-905-MONOMER; 140396,141036,141588,119189,124824,140795,112961 Kinesin-like protein KIN-14B (Kinesin CDKA-1-associated protein 2) (Kinesin-like protein KCA2) (Kinesin-like protein for actin-based chloroplast movement 2),Kinesin-like protein KIN-14A (Geminivirus Rep-interacting motor protein) (Geminivirus replication protein-interacting protein) (Kinesin CDKA-1-associated protein 1) (Kinesin-like protein KCA1) (Kinesin-like protein for actin-based chloroplast movement 1),Kinesin like protein for actin based chloroplast movement 2 cytosol [GO:0005829]; kinesin complex [GO:0005871]; microtubule [GO:0005874]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]; microtubule-based movement [GO:0007018]; nuclear migration along microfilament [GO:0031022],cell plate [GO:0009504]; chloroplast envelope [GO:0009941]; chromosome [GO:0005694]; cytosol [GO:0005829]; kinesin complex [GO:0005871]; membrane [GO:0016020]; microtubule [GO:0005874]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; spindle [GO:0005819]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]; cytokinesis by cell plate formation [GO:0000911]; microtubule-based movement [GO:0007018]; nuclear migration along microfilament [GO:0031022]; preprophase band assembly [GO:0000913]; viral process [GO:0016032],cell [GO:0005623]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; chloroplast accumulation movement [GO:0009904]; microtubule-based movement [GO:0007018] DEVELOPMENTAL STAGE: Not developmentally regulated. {ECO:0000269|PubMed:12172024}. TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15247388}.,TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:12172024}. locus:2168292;,locus:2142444; AT5G65460,AT5G10470 geminivirus Rep-interacting motor Kinesin-like protein KIN-14L B9FS74 KN14L_ORYSJ KIN14L Os06g0217600 LOC_Os06g11380 OsJ_20602 OSJNBb0024N18.29 ENOG411DTFT Q84K50 Q84K50_ARATH tRNA (adenine(58)-N(1))-methyltransferase (EC 2.1.1.220) 2.1.1.220 35442 tRNA (adenine(58)-N(1))-methyltransferase (EC 2.1.1.220) nucleus [GO:0005634]; tRNA (m1A) methyltransferase complex [GO:0031515]; tRNA (adenine-N1-)-methyltransferase activity [GO:0016429] locus:2222682; AT5G14600 tRNA (adenine-N(1)-)-methyltransferase catalytic subunit tRNA (adenine(58)-N(1))-methyltransferase (EC 2.1.1.220) Q7XTH1 Q7XTH1_ORYSJ Os04g0319600 OSJNBb0026L04.5 OSNPB_040319600 ENOG411DTFU TOR1L2 F4IK92 TORL2_ARATH TORTIFOLIA1-like protein 2 90656 TORTIFOLIA1-like protein 2 microtubule [GO:0005874]; microtubule binding [GO:0008017] locus:2060161; AT2G07170 microtubule-associated protein Os09g0560000 protein (cDNA clone:J033068E01, full insert sequence) Q653R0 Q653R0_ORYSJ Os09g0560000 Os09g0560000 OJ1065_E04.22 OsJ_30327 OSNPB_090560000 ENOG411DTFI KU80 Q9FQ09,A0A1P8AT14,A0A1P8ASX4 KU80_ARATH,A0A1P8AT14_ARATH,A0A1P8ASX4_ARATH ATP-dependent DNA helicase 2 subunit KU80 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit),ATP-dependent DNA helicase 2 subunit KU80 (EC 3.6.4.12) DISRUPTION PHENOTYPE: No visible phenotype when grown under normal conditions. Hypersensitivity to ionising radiation (IR) and to DNA-damaging agents. Longer telomeres. Defective in T-DNA integration. {ECO:0000269|PubMed:12182708, ECO:0000269|PubMed:12615949, ECO:0000269|PubMed:12753583, ECO:0000269|PubMed:16380432}. Delayed growth during later stages of development.,Increased susceptibility to T-DNA transformation. Resistant to Agrobacterium transformation-T. Tzfira-2005 FUNCTION: Single-stranded DNA-dependent ATP-dependent helicase. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair. When associated with KU70, binds to double-stranded telomeric and non-telomeric DNA sequences, but not to single-stranded DNA. Plays a role in maintaining telomere length. Acts as a negative regulator of telomerase. Binds to and recombines double-stranded T-DNA molecules. {ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12182708, ECO:0000269|PubMed:12615949, ECO:0000269|PubMed:16380432}.,FUNCTION: Single-stranded DNA-dependent ATP-dependent helicase. {ECO:0000256|PIRNR:PIRNR016570}. R-ATH-5693571;R-ATH-6798695; 3.6.4.12 76688,71706,74861 ATP-dependent DNA helicase 2 subunit KU80 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit),ATP-dependent DNA helicase 2 subunit KU80 (EC 3.6.4.12) cytoplasm [GO:0005737]; Ku70:Ku80 complex [GO:0043564]; nuclear chromosome, telomeric region [GO:0000784]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; damaged DNA binding [GO:0003684]; double-stranded DNA binding [GO:0003690]; telomeric DNA binding [GO:0042162]; DNA integration [GO:0015074]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; double-strand break repair [GO:0006302]; double-strand break repair via nonhomologous end joining [GO:0006303]; response to heat [GO:0009408]; telomere maintenance [GO:0000723],Ku70:Ku80 complex [GO:0043564]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; damaged DNA binding [GO:0003684]; telomeric DNA binding [GO:0042162]; DNA recombination [GO:0006310]; double-strand break repair via nonhomologous end joining [GO:0006303]; telomere maintenance [GO:0000723] TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12148535}. locus:2023757; AT1G48050 ATP-dependent DNA helicase 2 subunit ATP-dependent DNA helicase 2 subunit KU80 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit),Os03g0856200 protein,Os03g0856200 protein (Fragment) Q75IP6,A0A0P0W682,A0A0P0W6D5,A0A0P0W6D6 KU80_ORYSJ,A0A0P0W682_ORYSJ,A0A0P0W6D5_ORYSJ,A0A0P0W6D6_ORYSJ KU80 Os03g0856200 LOC_Os03g63920 OsJ_13430,Os03g0856200 OSNPB_030856200 FUNCTION: Single-stranded DNA-dependent ATP-dependent helicase. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair. When associated with KU70, binds to double-stranded telomeric and non-telomeric DNA sequences, but not to single-stranded DNA. Plays a role in maintaining telomere length. Acts as a negative regulator of telomerase (By similarity). {ECO:0000250}. ENOG411DTFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K15188 cyclin T NA NA NA NA NA NA NA ENOG411DTFB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF810) NA NA NA NA NA NA NA ENOG411DTFF UGP1,UGP2 P57751,Q9M9P3,A0A1P8BC93,F4KGY8,A0A1P8BC98,A0A1I9LT03,A0A1I9LT02 UGPA1_ARATH,UGPA2_ARATH,A0A1P8BC93_ARATH,F4KGY8_ARATH,A0A1P8BC98_ARATH,A0A1I9LT03_ARATH,A0A1I9LT02_ARATH UTP--glucose-1-phosphate uridylyltransferase 1 (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 1) (AtUGP1) (UDPGP 1) (UGPase 1),UTP--glucose-1-phosphate uridylyltransferase 2 (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (AtUGP2) (UDPGP 2) (UGPase 2),UDP-glucose pyrophosphorylase 2,UDP-GLUCOSE PYROPHOSPHORYLASE 1 DISRUPTION PHENOTYPE: Reduced number of seeds (PubMed:19366709). The double mutants upg1 and ugp2 display severe growth defects and male sterility due to the absence of callose deposition around microspores (PubMed:20435647). {ECO:0000269|PubMed:19366709, ECO:0000269|PubMed:20435647}. The atugp1/atugp2 double mutant showed extremely reduced plant growth and a delayed flowering time. FUNCTION: Converts glucose 1-phosphate to UDP-glucose, which is the major glycosyl donor for polysaccharides. Acts redundantly with UGP2 and is essential for the synthesis of sucrose, starch and cell wall, and callose deposition (PubMed:19366709, PubMed:20435647). Involved in the regulation of the programmed cell death (PCD) induced by the fungal toxin fumonisin B1 (FB1) (PubMed:23438466). {ECO:0000269|PubMed:19366709, ECO:0000269|PubMed:20435647, ECO:0000269|PubMed:23438466}.,FUNCTION: Converts glucose 1-phosphate to UDP-glucose, which is the major glycosyl donor for polysaccharides. Acts redundantly with UGP1 and is essential for the synthesis of sucrose, starch and cell wall, and callose deposition. {ECO:0000269|PubMed:19366709, ECO:0000269|PubMed:20435647}. ARA:AT5G17310-MONOMER;,ARA:AT3G03250-MONOMER;MetaCyc:AT3G03250-MONOMER; R-ATH-173599;R-ATH-3322077; 2.7.7.9; 2.7.7.9 51920,51738,37235,43750,42897,51116,52855 UTP--glucose-1-phosphate uridylyltransferase 1 (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 1) (AtUGP1) (UDPGP 1) (UGPase 1),UTP--glucose-1-phosphate uridylyltransferase 2 (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (AtUGP2) (UDPGP 2) (UGPase 2),UDP-glucose pyrophosphorylase 2,UDP-GLUCOSE PYROPHOSPHORYLASE 1 cytosol [GO:0005829]; plasma membrane [GO:0005886]; UTP:glucose-1-phosphate uridylyltransferase activity [GO:0003983]; callose deposition in cell wall [GO:0052543]; glycogen metabolic process [GO:0005977]; pollen development [GO:0009555]; positive regulation of cell death [GO:0010942]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651]; UDP-glucose metabolic process [GO:0006011],cytosol [GO:0005829]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; UTP:glucose-1-phosphate uridylyltransferase activity [GO:0003983]; callose deposition in cell wall [GO:0052543]; cellular response to phosphate starvation [GO:0016036]; glycogen metabolic process [GO:0005977]; pollen development [GO:0009555]; response to salt stress [GO:0009651]; sucrose metabolic process [GO:0005985]; UDP-glucose metabolic process [GO:0006011],viral nucleocapsid [GO:0019013]; UTP:glucose-1-phosphate uridylyltransferase activity [GO:0003983]; UDP-glucose metabolic process [GO:0006011],UTP:glucose-1-phosphate uridylyltransferase activity [GO:0003983]; UDP-glucose metabolic process [GO:0006011] TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:19366709}.,TISSUE SPECIFICITY: Expressed in cauline leaves, flowers and siliques. {ECO:0000269|PubMed:19366709}. locus:2167220;,locus:2097785; AT5G17310,AT3G03250 Utp-glucose-1-phosphate UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9),Os01g0264100 protein (Fragment) Q6ZGL5,Q93X08,A0A0P0V0U6 Q6ZGL5_ORYSJ,Q93X08_ORYSJ,A0A0P0V0U6_ORYSJ Os02g0117700 Os02g0117700 OJ1442_E05.31 OSNPB_020117700,UGP Os09g0553200 OsJ_30269 OSNPB_090553200,Os01g0264100 OSNPB_010264100 ENOG411DTFE HMGB15 Q9MAT6 HMG15_ARATH High mobility group B protein 15 (Nucleosome/chromatin assembly factor group D 15) FUNCTION: Binds preferentially DNA with A/T-rich content. {ECO:0000250}. 50004 High mobility group B protein 15 (Nucleosome/chromatin assembly factor group D 15) nucleus [GO:0005634]; pollen tube [GO:0090406]; four-way junction DNA binding [GO:0000400]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]; glucosinolate metabolic process [GO:0019760]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2010587; AT1G04880 high mobility group ARID transcription factor (Glutathione S-transferase GST16-like protein) (Os02g0469900 protein) (cDNA clone:J013042H05, full insert sequence) Q6K7A1 Q6K7A1_ORYSJ Os02g0469900 Os02g0469900 OJ1371_D04.11 OsJ_06686 OSNPB_020469900 P0403C01.3 ENOG411E78D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: heavy-metal-associated domain-containing protein NA NA NA NA NA NA NA ENOG411E0NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBD Os04g0409100 protein A0A0P0WAG9 A0A0P0WAG9_ORYSJ Os04g0409100 OSNPB_040409100 ENOG411E0NN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:FAE_3-kCoA_syn1 Os12g0503000 protein (Ureide permease 4, putative, expressed) (cDNA clone:006-207-D03, full insert sequence) (cDNA clone:006-304-G07, full insert sequence) (cDNA clone:J023038C16, full insert sequence) (cDNA clone:J033030F01, full insert sequence),Os12g0503000 protein (Ureide permease 4, putative, expressed) (cDNA clone:002-105-A09, full insert sequence),Os12g0503000 protein Q2QQ90,Q2QQ87,A0A0P0YAI7 Q2QQ90_ORYSJ,Q2QQ87_ORYSJ,A0A0P0YAI7_ORYSJ Os12g0503000 LOC_Os12g31860 Os12g0503000 OsJ_36200 OSNPB_120503000,Os12g0503000 LOC_Os12g31860 OSNPB_120503000,Os12g0503000 OSNPB_120503000 ENOG411E0NH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SERPIN Probable non-inhibitory serpin-Z9 (OrysaZ9) Q2R8P2 SPZ9_ORYSJ Os11g0222200 LOC_Os11g11500 ENOG411E0NK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Ankyrin Repeat Embryogenesis transmembrane protein-like (Os06g0294000 protein) (cDNA clone:J013105J22, full insert sequence) Q5ZA84 Q5ZA84_ORYSJ Os06g0294000 OsJ_21035 OSNPB_060294000 P0036B02.1 ENOG411E0NJ ECI3,ECI2 O23300,O23299 ECI3_ARATH,ECI2_ARATH Enoyl-CoA delta isomerase 3 (EC 5.3.3.8) (3-hydroxyacyl-CoA dehydratase 1) (Delta(3),Delta(2)-enoyl CoA isomerase 3) (AtECI3),Enoyl-CoA delta isomerase 2, peroxisomal (EC 5.3.3.8) (Delta(3),Delta(2)-enoyl CoA isomerase 2) (AtECI2) (Indole-3-butyric acid response 10) DISRUPTION PHENOTYPE: Defective in root hair expansion (PubMed:20562230). Mutant plants are resistant to the inhibitory effect of intermediate levels of indole-3-butyric acid (IBA) and 2,4-DB on root elongation (PubMed:18725356). {ECO:0000269|PubMed:18725356, ECO:0000269|PubMed:20562230}. This mutant does not show any change in sensitivity to indole-3-butyric acid (IBA)(although a mutation in a closely related gene (IBR10 / At4g14430) does cause increased IBA resistance). FUNCTION: Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Essential for the beta oxidation of unsaturated fatty acids. {ECO:0000269|PubMed:18657232}.,FUNCTION: Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Essential for the beta oxidation of unsaturated fatty acids (PubMed:18657232). Involved with IBR1 and IBR3 in the peroxisomal beta-oxidation of indole-3-butyric acid (IBA) to form indole-3-acetic acid (IAA), a biologically active auxin (PubMed:20562230). {ECO:0000269|PubMed:18657232, ECO:0000269|PubMed:20562230}. PATHWAY: Lipid metabolism; fatty acid beta-oxidation. {ECO:0000305}. ARA:AT4G14440-MONOMER;MetaCyc:AT4G14440-MONOMER;,ARA:AT4G14430-MONOMER;MetaCyc:AT4G14430-MONOMER; 5.3.3.8 25596,25773 Enoyl-CoA delta isomerase 3 (EC 5.3.3.8) (3-hydroxyacyl-CoA dehydratase 1) (Delta(3),Delta(2)-enoyl CoA isomerase 3) (AtECI3),Enoyl-CoA delta isomerase 2, peroxisomal (EC 5.3.3.8) (Delta(3),Delta(2)-enoyl CoA isomerase 2) (AtECI2) (Indole-3-butyric acid response 10) cytosol [GO:0005829]; nucleus [GO:0005634]; dodecenoyl-CoA delta-isomerase activity [GO:0004165]; fatty acid beta-oxidation [GO:0006635]; fatty acid catabolic process [GO:0009062]; response to karrikin [GO:0080167],peroxisome [GO:0005777]; dodecenoyl-CoA delta-isomerase activity [GO:0004165]; fatty acid beta-oxidation [GO:0006635]; fatty acid catabolic process [GO:0009062]; indolebutyric acid metabolic process [GO:0080024]; response to indolebutyric acid [GO:0080026]; root hair elongation [GO:0048767] locus:2129740;,locus:2129730; AT4G14440,AT4G14430 enoyl-CoA hydratase isomerase family protein Os05g0529200 protein (cDNA clone:J013042H06, full insert sequence) Q65XC3 Q65XC3_ORYSJ Os05g0529200 Os05g0529200 OJ1187_E11.16 OSNPB_050529200 ENOG411E0NE RTNLB6,RTNLB5 Q6DBN4,O82352,A0A1I9LMG1,B3H7B0 RTNLF_ARATH,RTNLE_ARATH,A0A1I9LMG1_ARATH,B3H7B0_ARATH Reticulon-like protein B6 (AtRTNLB6),Reticulon-like protein B5 (AtRTNLB5),Reticulon-like protein 28816,28688,23310,20832 Reticulon-like protein B6 (AtRTNLB6),Reticulon-like protein B5 (AtRTNLB5),Reticulon-like protein endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; response to karrikin [GO:0080167],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] locus:2082772;,locus:2062882; AT3G61560,AT2G46170 Reticulon NA NA NA NA NA NA NA ENOG411E0NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) Os04g0528000 protein (Fragment) A0A0P0WCS3 A0A0P0WCS3_ORYSJ Os04g0528000 OSNPB_040528000 ENOG411E0NY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylinositol-4-phosphate 5-Kinase Os03g0262000 protein Q0DTA0 Q0DTA0_ORYSJ Os03g0262000 OSNPB_030262000 ENOG411E0NZ RFS4,STS Q9SYJ4,A0A1P8B654 RFS4_ARATH,A0A1P8B654_ARATH Probable galactinol--sucrose galactosyltransferase 4 (EC 2.4.1.82) (Raffinose synthase 4),Stachyose synthase FUNCTION: Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers (By similarity). {ECO:0000250}. 2.4.1.82; 2.4.1.82 98012,103886 Probable galactinol--sucrose galactosyltransferase 4 (EC 2.4.1.82) (Raffinose synthase 4),Stachyose synthase galactinol-raffinose galactosyltransferase activity [GO:0047268]; galactinol-sucrose galactosyltransferase activity [GO:0047274]; carbohydrate metabolic process [GO:0005975]; response to karrikin [GO:0080167]; response to oxidative stress [GO:0006979],catalytic activity [GO:0003824] locus:2141425; AT4G01970 Stachyose Os11g0672450 protein A0A0P0Y5B1 A0A0P0Y5B1_ORYSJ Os11g0672450 OSNPB_110672450 ENOG411E0NU Q9LN67 Q9LN67_ARATH At1g19310/F18O14_14 (F18O14.3) (RING/U-box superfamily protein) R-ATH-382556;R-ATH-901032; 24517 At1g19310/F18O14_14 (F18O14.3) (RING/U-box superfamily protein) Derlin-1 retrotranslocation complex [GO:0036513]; integral component of membrane [GO:0016021]; ubiquitin protein ligase activity involved in ERAD pathway [GO:1904264]; ubiquitin-like protein conjugating enzyme binding [GO:0044390]; ER-associated misfolded protein catabolic process [GO:0071712]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787] locus:2016437; AT1G19310 zinc finger Os01g0766200 protein (Fragment) A0A0P0V8K7,A0A0P0V8K3 A0A0P0V8K7_ORYSJ,A0A0P0V8K3_ORYSJ Os01g0766200 OSNPB_010766200 ENOG411E0NT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Predicted membrane protein Expressed protein (Expressed protein (Having alternative splicing)) (Os03g0756400 protein) Q75J22 Q75J22_ORYSJ OSJNBb0081K01.6 LOC_Os03g54920 Os03g0756400 OsJ_12642 OSNPB_030756400 ENOG411E0NV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF789) NA NA NA NA NA NA NA ENOG411E0NQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor and archaeal histone CCAAT transcription factor (Histone-like transcription factor and archaeal histone family protein, expressed) (Os11g0544700 protein) (cDNA clone:J023143I16, full insert sequence) Q2R2Z2 Q2R2Z2_ORYSJ LOC_Os11g34200 Os11g0544700 OsJ_34182 OSNPB_110544700 ENOG411E0NP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Small glutamine-rich tetratricopeptide repeat (TPR)-containing Os04g0690400 protein (Fragment) A0A0P0WGW7 A0A0P0WGW7_ORYSJ Os04g0690400 OSNPB_040690400 ENOG411E0NS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B-box zinc finger Os05g0204600 protein Q6ATK0 Q6ATK0_ORYSJ Os05g0204600 Os05g0204600 OSJNBa0015G13.14 OSNPB_050204600 ENOG411E0NR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Globin Os05g0517600 protein Q75II4 Q75II4_ORYSJ Os05g0517600 Os05g0517600 B1130G10.18 OSNPB_050517600 ENOG411E0N9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UbiA prenyltransferase family Homogentisate geranylgeranyltransferase, chloroplastic (OsHGGT) (EC 2.5.1.116),Os06g0646900 protein Q0DAK7,A0A0P0WZB8 HGGT_ORYSJ,A0A0P0WZB8_ORYSJ HGGT Os06g0646900 LOC_Os06g43880 OJ1226_A12.22 OSJNBa0062J02.6,Os06g0646900 OSNPB_060646900 FUNCTION: Involved in the synthesis of tocotrienol (vitamin E) (PubMed:21175184). Catalyzes the condensation of homogentisate and geranylgeranyl diphosphate to form 2-methyl-6-geranylgeranylbenzoquinol. Possesses low activity with phytyl diphosphate as substrate (By similarity). Tocotrienols functions to limit lipid peroxidation during seed germination (PubMed:21175184). {ECO:0000250|UniProtKB:Q7XB14, ECO:0000269|PubMed:21175184}. MISCELLANEOUS: Seeds of most monocots are enriched in tocotrienols and contain only small amounts of tocopherols. {ECO:0000303|PubMed:12897790}. ENOG411E0N4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Dehydration-responsive element-binding protein Dehydration-responsive element-binding protein 2B (OsDREB2B) Q5W6R4 DRE2B_ORYSJ DREB2B ERF42 Os05g0346200 LOC_Os05g27930 B1036C05.12 B1164G01.2 OsJ_18158 FUNCTION: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. ENOG411E0N0 DSPTP1 Q9ZR37,A0A1I9LQM6,A0A1I9LQM7,A0A1I9LQM8 DUS1_ARATH,A0A1I9LQM6_ARATH,A0A1I9LQM7_ARATH,A0A1I9LQM8_ARATH Dual specificity protein phosphatase 1 (AtDsPTP1) (EC 3.1.3.16) (EC 3.1.3.48),Dual specificity protein phosphatase 1 FUNCTION: Has a dual specificity toward Ser/Thr and Tyr-containing proteins. Dephosphorylates MPK4 in vitro. {ECO:0000269|PubMed:10036776}. 3.1.3.16; 3.1.3.48 22017,22694,22116,16762 Dual specificity protein phosphatase 1 (AtDsPTP1) (EC 3.1.3.16) (EC 3.1.3.48),Dual specificity protein phosphatase 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; calmodulin binding [GO:0005516]; protein tyrosine phosphatase activity [GO:0004725]; protein tyrosine/serine/threonine phosphatase activity [GO:0008138]; protein dephosphorylation [GO:0006470],protein tyrosine/serine/threonine phosphatase activity [GO:0008138] TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:10036776}. locus:2088080; AT3G23610 dual specificity protein phosphatase Os01g0390900 protein (Putative DsPTP1 protein) (cDNA clone:J033149O18, full insert sequence),Os01g0390900 protein Q5VNG7,A0A0P0V3B8 Q5VNG7_ORYSJ,A0A0P0V3B8_ORYSJ Os01g0390900 OJ1460_H08.5 OsJ_01901 OSNPB_010390900,Os01g0390900 OSNPB_010390900 ENOG411E0N2 Q940Q0,Q940P1,A0A1P8BA84,A0A1P8BA94,A0A1P8BA88,F4KF77 Q940Q0_ARATH,Q940P1_ARATH,A0A1P8BA84_ARATH,A0A1P8BA94_ARATH,A0A1P8BA88_ARATH,F4KF77_ARATH AT5g03180/F15A17_210 (RING/U-box superfamily protein),At3g09760/F8A24.19 (RING finger family protein) (RING/U-box superfamily protein),RING/U-box superfamily protein 52238,54128,46719,48733,46252,52705 AT5g03180/F15A17_210 (RING/U-box superfamily protein),At3g09760/F8A24.19 (RING finger family protein) (RING/U-box superfamily protein),RING/U-box superfamily protein integral component of membrane [GO:0016021]; zinc ion binding [GO:0008270] locus:2075064;,locus:2143458; AT5G03180,AT3G09760 RINGv NA NA NA NA NA NA NA ENOG411DSJU Q8S8G1 Q8S8G1_ARATH ARM repeat superfamily protein (At2g05810) (Uncharacterized protein At2g05810) 62897 ARM repeat superfamily protein (At2g05810) (Uncharacterized protein At2g05810) cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2056529; AT2G05810 armadillo beta-catenin-like repeat family protein Os09g0135800 protein (cDNA clone:002-146-D03, full insert sequence) (cDNA clone:J033082G22, full insert sequence) Q0J3B0 Q0J3B0_ORYSJ Os09g0135800 Os09g0135800 OsJ_28467 OSNPB_090135800 ENOG411DSJT DLO2,DLO1 Q9ZSA7,Q9ZSA8 DLO2_ARATH,DLO1_ARATH Protein DMR6-LIKE OXYGENASE 2 (EC 1.14.11.-) (2-oxoglutarate (2OG)-Fe(II) oxygenase-like protein DLO2) (Salicylate 3-hydroxylase DLO2) (S3H DLO2) (SA 3-hydroxylase DLO2) (Salicylic acid 3-hydroxylase DLO2) (EC 1.14.13.-),Protein DMR6-LIKE OXYGENASE 1 (EC 1.14.11.-) (2-oxoglutarate (2OG)-Fe(II) oxygenase-like protein DLO1) (Protein SENESCENCE-ASSOCIATED GENE 108) (Salicylate 3-hydroxylase DLO1) (S3H DLO1) (SA 3-hydroxylase DLO1) (Salicylic acid 3-hydroxylase DLO1) (EC 1.14.13.-) DISRUPTION PHENOTYPE: Impaired production of 2,3-DHBA sugar conjugates but accumulation of salicylic acid (SA) and its sugar conjugates. Precocious senescence. Enhanced expression of senescence-associated and defense-related genes. {ECO:0000269|PubMed:23959884}. FUNCTION: Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity). Negative regulator of defense against Hyaloperonospora arabidopsidis (PubMed:25376907). {ECO:0000250|UniProtKB:Q9ZSA8, ECO:0000269|PubMed:25376907}.; FUNCTION: (Microbial infection) Confers susceptibility to the downy mildew pathogen Hyaloperonospora arabidopsidis. {ECO:0000269|PubMed:25376907}.,FUNCTION: Converts salicylic acid (SA) to both 2,3-dihydroxybenzoic acid (2,3-DHBA) and 2,5-DHBA in vitro but only 2,3-DHBA in vivo. Component of a negative feedback regulation system of SA levels during senescence. Regulates both onset and progression of leaf senescence (PubMed:23959884). Negative regulator of defense against Hyaloperonospora arabidopsidis (PubMed:25376907). {ECO:0000269|PubMed:23959884, ECO:0000269|PubMed:25376907}.; FUNCTION: (Microbial infection) Confers susceptibility to the downy mildew pathogen Hyaloperonospora arabidopsidis. {ECO:0000269|PubMed:25376907}. ARA:AT4G10490-MONOMER;,ARA:AT4G10500-MONOMER; 1.14.11.-; 1.14.13.- 39282,39234 Protein DMR6-LIKE OXYGENASE 2 (EC 1.14.11.-) (2-oxoglutarate (2OG)-Fe(II) oxygenase-like protein DLO2) (Salicylate 3-hydroxylase DLO2) (S3H DLO2) (SA 3-hydroxylase DLO2) (Salicylic acid 3-hydroxylase DLO2) (EC 1.14.13.-),Protein DMR6-LIKE OXYGENASE 1 (EC 1.14.11.-) (2-oxoglutarate (2OG)-Fe(II) oxygenase-like protein DLO1) (Protein SENESCENCE-ASSOCIATED GENE 108) (Salicylate 3-hydroxylase DLO1) (S3H DLO1) (SA 3-hydroxylase DLO1) (Salicylic acid 3-hydroxylase DLO1) (EC 1.14.13.-) dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; defense response to oomycetes [GO:0002229]; salicylic acid catabolic process [GO:0046244],dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]; defense response to oomycetes [GO:0002229]; leaf senescence [GO:0010150]; response to bacterium [GO:0009617]; response to fungus [GO:0009620]; response to oomycetes [GO:0002239]; response to salicylic acid [GO:0009751]; salicylic acid catabolic process [GO:0046244] locus:2127686;,locus:2127691; AT4G10490,AT4G10500 2-oxoacid-dependent dioxygenase OSJNBa0064M23.15 protein (Os04g0581100 protein) (cDNA clone:J023123J08, full insert sequence) Q7XUN0 Q7XUN0_ORYSJ Os04g0581100 Os04g0581100 OsJ_15897 OSJNBa0064M23.15 OSNPB_040581100 ENOG411DSJQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant protein of unknown function (DUF868) NA NA NA NA NA NA NA ENOG411DSJP AHK3 Q9C5U1 AHK3_ARATH Histidine kinase 3 (EC 2.7.13.3) (Arabidopsis histidine kinase 3) (AtHK3) (Protein AUTHENTIC HIS-KINASE 3) (Protein ORESARA 12) DISRUPTION PHENOTYPE: Hypersensitivity to ABA, and strong drought and salinity tolerance. Reduced sensitivity to cytokinin (mostly in roots). More rapid germination, reduced requirement for light, and decreased far-red light sensitivity. Early senescence promoted by darkness. Reduced sensitivity to N-isobutyl decanamide. Defects in procambium proliferation and absence of secondary growth. Enhanced freezing tolerance. Impaired benzyladenine (6-BA)-mediated repression of the iron uptake pathway. Disturbed cytokinin-mediated flower development abnormality. Impaired meristematic development in seedlings. {ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290, ECO:0000269|PubMed:16361392, ECO:0000269|PubMed:16753566, ECO:0000269|PubMed:17965178, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18397377, ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:19913077, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:20463025}. No inhibition of stimulation of cell division and greening of hypocotyl-derived calli when treated with cytokinin (similar to wildtype response).,Normal or slightly reduced sensitivity to cytokinin in shoot induction assay (exogenous application of cytokinins induces wildtype shoot formation).,No visible phenotype.,Bolting time is slightly delayed (2 to 3 days) and the inflorescence stem length is reduced. However morphology and fertility of the flowers is relatively unaffected.,Compact rosettes with shortened petioles and small leaf blades.,Root elongation unaffected.,Semi-dwarf phenotype.,Strong cytokinin-insensitive phenotype.,The hypocotyl length of the double mutant is slightly decreased; this effect is largely due to reduction in cell number rather than cell size.,The leaves of the double mutant expand more slowly than those of wildtype. At 17days after germination their surface area is 55% that of wildtype plants.,Aborted vascular system containing few protoxylem cells in the primary root. Normal adventitious root-vascular system.,Adventitious roots are normal.,Does not produce lateral roots from the primary root. However 10 days after germination lateral roots are formed at the upper part of the hypocotyl rather than at the root-hypocotyl junction.,Dwarf phenotype.,Growth severely affected during reproductive growth phase: onset of flowering varies with each individual plant.,Leaf shape slightly altered: longitudinal length of blade more affected than lateral length. Impaired leaf vasculature.,Leaves expand more slowly than those of wildtype controls.,Normal vascular system in adventitious roots although the hypocotyl and primary root develop aborted vascular tissues.,Postembryonic growth of roots (primary and lateral) severely impaired.,Reduced seedling size with small cotyledons slightly shortened hypocotyls (65% of wildtype) and significantly reduced root length.,The leaves of the triple mutant expand more slowly than those of wildtype. At 17 days after germination their surface area is 20% that of wildtype plants.,The rate of leaf primordial formation is slightly decreased but the phyllotaxy is normal.,Normal roots.,Smaller leaves and shorter stems than wildtype.,Enhancement of the inhibition of cytokinin-induced stimulation of cell division and greening of hypocotyl-derived calli compared to the responsed observed with CRE1 single mutants (e.g. cre1-10).,Reduced sensitivity to cytokinin in root growth assay (exogenous application of cytokinins inhibits wildtype root elongation).,Chlorophyll content further reduced compared to single mutant ahk3-7.,Displays secondary lateral root branching (not seen in wild-type).,Downwards bending of cotyledons indicating differential growth in the adaxial and abaxial sides.,Early germination compared to wild-type.,Enhancement of phenotype observed for single mutant ahk3-7: Reduced ability to respond to cytokinin by callus or shoot formation.,Enhancement of phenotype observed in single mutant ahk3-7: Mutant seedlings grow better and form darker green leaves in the presence of elevated levels of cytokinins in medium. Increased cytokinin resistance,Epidermal cells of fifth leaf at maturity are about double in size compared to wild-type cells. Leaves formed at later stages are similar to wild-type.,Further reduction of rosette diameter size compared to single mutant ahk3-7.,No alteration of flowering induction timing.,No alteration of rate of leaf formation.,Reduced length and width of leaves but overall form and heteroblasty is not altered.,Resistant to cytokinin-induced hypocotyl shortening.,Three- to tenfold higher cytokinin concentrations required to induce callus formation and growth. Shoot formation very rarely observed in double mutant explants.,Total loss of cytokinin-dependent chlorophyll retention in leaves (under dark conditions causing the so-called dark-induced senescence).,Two- to three-fold increase of concentrations of all zeatin metabolites.,Almost completely infertile but can be allowed to self-fertilize under favorable temperature and light conditions.,Chlorophyll content about 35% of that of wild-type.,Delay in flowering induction.,Delay in rate of leaf formation. Longer plastochrone.,Increase in trans-zeatin (16-fold) and trans-zeatin ribosides (9-fold) concentrations. 50-fold concentration increase for zeatin-O-glucoside.,Increased cytokinin resistance compared to double mutant ahk2-5 ahk3-7.,Increased seed size largely due to increased size of the embryo. Embryonic root epidermal cells increased 15% in number and 30% in size compared to wild-type.,Leaf epifermal cell size is increased about three-fold compared to wild-type cells in young as well as older leaves.,Shorter hypocotyls than wild-type when grown in white light but increase in length when grown in darkness (~25%) and red- and far-red-light.,Stronger reduction of shoot development compared to double mutant ahk2-5 ahk3-7.,Seedlings appear normal.,Reduced levels of cytokinin inducible gene expression specifically AAR5-7.,The meristem of the mutants did not stop growing at 5 dpg and kept increasing in size. Furthermore the growth rate of mutant roots was higher than the wild-type resulting in longer roots.,The root-meristem size of the double mutant was indistinguishable from that of the ahk3 mutant.,Reduced down-regulaton of phosphate starvation induced gene expression when plants are treated with cytokinins. Reduced response to exogenous cytokinins.,Chlorophyll content about 75% of that of wild-type.,Final height of mutant plant about two-thirds of that of wild-type.,Mutant seedlings grow better and form darker green leaves in the presence of elevated levels of cytokinins in medium.,No loss of cytokinin-dependent chlorophyll retention in leaves (under dark conditions causing the so-called dark-induced senescence).,Reduced ability to respond to cytokinin by callus or shoot formation.,Rosette diameter reduced ~15% compared to wild-type.,Cytokinin insensitive (no inhibition of growth compared to wildtype).,Occasionally produces inflorescence stems with abnormal and non-functional flowers which did not produce seeds.,Shoot and root growth is very slow and leaf number is decreased compared to wildtype.,delayed leaf senescence; chlorophyll content and the photochemical efficiency of photosystem II (Fv/Fm) physiological markers of leaf senescence were maintained at higher levels in the ore12-1 mutant with age of the leaves; chlorophyll a/b-binding protein (CAB) gene and a senescenceassociated gene SAG12 were expressed at higher and lower levels respectively; mutation greatly delayed dark-induced leaf senescence,Small SAM and limited root growth. Insensitive to cytokinin; Sensitive to sucrose-J. Paz-Ares-2005 FUNCTION: Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feeds phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. Involved in meristems establishment in seedlings. Redundant negative regulator of drought and salt stress responses and abscisic acid (ABA) signaling. Together with AHK2, plays a negative regulatory role in cold stress signaling via inhibition of ABA response, occurring independently of the cold acclimation pathway. Redundant positive regulator of cytokinin signaling that regulates many developmental processes including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Can interact with isoprenoid-type cytokinins trans-zeatin (tZ and tZR), cis-zeatin (cZ), dihydrozeatin (DZ), buta-2,3-dienyladenine (HA-8), penta-2,3-dienyladenine (HA-1), 4-methyl-penta-2,3-dienyladenine (HA-10), 4-hydroxy-2-butynyladenine (RM1), 2-propynyladenine (RM3), 2-butynyladenine (RM6), and cytokinin ribosides and ribotides. Together with AHK4, involved in the cytokinin-dependent responses to Pi starvation and sucrose stresses. Promotes cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator ARR2. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Contributes to vascular bundle formation and secondary growth in a cytokinin-dependent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Plays a role in the cytokinin-mediated repression of the iron uptake pathway. Required by the cytokinin-dependent flower development regulation pathway. {ECO:0000269|PubMed:11230578, ECO:0000269|PubMed:11577198, ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290, ECO:0000269|PubMed:15509853, ECO:0000269|PubMed:15923327, ECO:0000269|PubMed:16361392, ECO:0000269|PubMed:16407152, ECO:0000269|PubMed:16753566, ECO:0000269|PubMed:17075078, ECO:0000269|PubMed:17956858, ECO:0000269|PubMed:17965178, ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:18397377, ECO:0000269|PubMed:18571199, ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:19913077, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:20463025}. MISCELLANEOUS: 'Oresara' means 'long living' in Korean. 2.7.13.3 116373 Histidine kinase 3 (EC 2.7.13.3) (Arabidopsis histidine kinase 3) (AtHK3) (Protein AUTHENTIC HIS-KINASE 3) (Protein ORESARA 12) endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cytokinin receptor activity [GO:0009884]; phosphorelay sensor kinase activity [GO:0000155]; protein histidine kinase activity [GO:0004673]; protein histidine kinase binding [GO:0043424]; cellular response to abscisic acid stimulus [GO:0071215]; cellular response to cold [GO:0070417]; cellular response to phosphate starvation [GO:0016036]; cellular response to sucrose stimulus [GO:0071329]; cytokinin-activated signaling pathway [GO:0009736]; defense response to bacterium [GO:0042742]; leaf senescence [GO:0010150]; negative regulation of iron ion transport [GO:0034757]; nucleoside metabolic process [GO:0009116]; phloem or xylem histogenesis [GO:0010087]; regulation of chlorophyll catabolic process [GO:0010271]; regulation of flower development [GO:0009909]; regulation of meristem development [GO:0048509]; regulation of seed germination [GO:0010029]; regulation of shoot system development [GO:0048831]; response to cold [GO:0009409]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; secondary growth [GO:0080117] DEVELOPMENTAL STAGE: In seedlings, mainly localized in meristematic tissues (e.g. shoot apical meristem SAM, root tips, and growing leaf and lateral root primordia). Present in all the vasculature and the shoot apical meristem (SAM) of the adult plant. In the root tips, strongest expression in the procambium. {ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:16753566}. TISSUE SPECIFICITY: Mostly expressed in leaves and flowers, and, to a lower extent, in roots, stems, and siliques, especially in the vascular tissues. Present in seedlings. {ECO:0000269|PubMed:11230578, ECO:0000269|PubMed:15155880, ECO:0000269|PubMed:15166290}. locus:2015964; AT1G27320 Histidine kinase Probable histidine kinase 3 (OsHK3) (EC 2.7.13.3) (OsCRL2),Probable kinase CHARK (EC 2.7.11.-) (CHASE domain receptor-like serine/threonine kinase) (OsCRL4) (OsHKL1),Os01g0923700 protein (Fragment),Os01g0923700 protein A1A696,Q2QRN7,A0A0N7KEB6,A0A0P0VC45,A0A0P0VC66 OHK3_ORYSJ,CHARK_ORYSJ,A0A0N7KEB6_ORYSJ,A0A0P0VC45_ORYSJ,A0A0P0VC66_ORYSJ HK3 OHK2 Os01g0923700 LOC_Os01g69920 B1455F06.33 P0592G05.17,CHARK Os12g0454800 LOC_Os12g26940 OsJ_36000,Os01g0923700 OSNPB_010923700 FUNCTION: Cytokinin receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. {ECO:0000250|UniProtKB:A1A698}.,FUNCTION: Putative receptor kinase that may be involved in cytokinin signaling. {ECO:0000305}. ENOG411DSJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0149900 protein (cDNA clone:J013069K12, full insert sequence) Q5ZED3 Q5ZED3_ORYSJ Os01g0149900 OsJ_00384 OSNPB_010149900 P0009G03.1 P0434B04.34 ENOG411DSJR A0A1P8BDX4,A0A1P8BDW8,B3H5R7,F4K4R1 A0A1P8BDX4_ARATH,A0A1P8BDW8_ARATH,B3H5R7_ARATH,F4K4R1_ARATH Fanconi anemia group I-like protein R-ATH-6783310; 159798,159669,164227,164355 Fanconi anemia group I-like protein DNA repair [GO:0006281],plasmodesma [GO:0009506]; DNA polymerase binding [GO:0070182]; DNA repair [GO:0006281]; mitotic G2 DNA damage checkpoint [GO:0007095] locus:2155169; AT5G49110 fanconi anemia group I Os05g0314700 protein (cDNA clone:002-182-E08, full insert sequence),Os03g0341200 protein Q5WMU6,A0A0P0VX92 Q5WMU6_ORYSJ,A0A0P0VX92_ORYSJ Os05g0314700 OJ1308_D01.10 OsJ_18022 OSNPB_050314700,Os03g0341200 OSNPB_030341200 ENOG411DSJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0571700 protein Q65XL0 Q65XL0_ORYSJ Os05g0571700 OJ1735_C10.8 OsJ_19618 OSNPB_050571700 ENOG411DSJJ FK Q9LDR4,F4J859 ERG24_ARATH,F4J859_ARATH Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol reductase) (Protein FACKEL) (Sterol C14-reductase),Ergosterol biosynthesis ERG4/ERG24 family Embryo and seedling defective-G. Jurgens-2000 FUNCTION: Reduces the C14=C15 double bond of 4,4-dimethyl-cholesta-8,14,24-trienol to produce 4,4-dimethyl-cholesta-8,24-dienol. Required for cell division and expansion and is involved in proper organization of the embryo. PATHWAY: Steroid biosynthesis; zymosterol biosynthesis; zymosterol from lanosterol: step 2/6. ARA:AT3G52940-MONOMER;MetaCyc:AT3G52940-MONOMER; R-ATH-191273; 1.3.1.70 41913,29202 Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol reductase) (Protein FACKEL) (Sterol C14-reductase),Ergosterol biosynthesis ERG4/ERG24 family integral component of endoplasmic reticulum membrane [GO:0030176]; delta14-sterol reductase activity [GO:0050613]; NADP binding [GO:0050661]; sterol biosynthetic process [GO:0016126],integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [GO:0016628] locus:2085146; AT3G52940 delta14-sterol reductase Os09g0565600 protein (cDNA, clone: J080318K21, full insert sequence),Os01g0354200 protein (cDNA clone:002-110-E10, full insert sequence) B7F9K3,B7F4K3 B7F9K3_ORYSJ,B7F4K3_ORYSJ Os09g0565600 OsJ_30372 OSNPB_090565600,Os01g0354200 OSNPB_010354200 ENOG411DSJA PSAT Q4VCM1 LCAT2_ARATH Phospholipid--sterol O-acyltransferase (EC 2.3.1.-) (Lecithin-cholesterol acyltransferase-like 2) DISRUPTION PHENOTYPE: Early leaf senescence. Strong reduction in total sterol esters content in leaves and seeds. No change in flowers. {ECO:0000269|PubMed:16020547, ECO:0000269|PubMed:19923239}. Early leaf senescence; Low sterol ester content in leaves and seeds-H. Schaller-2009 FUNCTION: Involved in lipid catabolism. Essential for sterol esters biosynthesis in leaves and seeds, but not in flowers. Plays a role in controlling the free sterol content of leaves. Catalyzes the transacylation of acyl groups from phospholipids to a variety of different sterols. Prefers phosphatidylethanolamine over phosphatidylcholine as an acyl donor. Not active toward neutral lipids. Highly specific for position sn-2, which in plant lipids is essentially devoid of saturated acyl groups. Broad sterol specificity (cholesterol > campesterol > sitosterol > stigmasterol), but no activity with lupeol or beta-amyrin. {ECO:0000269|PubMed:16020547, ECO:0000269|PubMed:19923239}. ARA:GQT-401-MONOMER; 2.3.1.- 71688 Phospholipid--sterol O-acyltransferase (EC 2.3.1.-) (Lecithin-cholesterol acyltransferase-like 2) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; organelle membrane [GO:0031090]; phosphatidate-sterol O-acyltransferase activity [GO:0080096]; phosphatidylcholine-sterol O-acyltransferase activity [GO:0004607]; phosphatidylethanolamine-sterol O-acyltransferase activity [GO:0080095]; leaf senescence [GO:0010150]; sterol catabolic process [GO:0016127]; sterol esterification [GO:0034434] locus:2024117; AT1G04010 Pfam:LACT Os02g0814100 protein (Fragment) A0A0N7KGB4 A0A0N7KGB4_ORYSJ Os02g0814100 OSNPB_020814100 ENOG411DSJC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant protein NA NA NA NA NA NA NA ENOG411DSJ5 Q1PFC5 PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405 52995 Pentatricopeptide repeat-containing protein At1g77405 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2825891; AT1G77405 Pentatricopeptide repeat-containing protein Os03g0736200 protein (Pentatricopeptide, putative) (Putative fertility restorer-like protein) Q84R52 Q84R52_ORYSJ OSJNBb0016H12.12 LOC_Os03g52620 Os03g0736200 OsJ_12484 OSNPB_030736200 ENOG411DSJ4 Q9ZVT6,F4JS91 Q9ZVT6_ARATH,F4JS91_ARATH BSD domain-containing protein (F15K9.5 protein) (Uncharacterized protein At1g03350),BSD domain-containing protein 51896,36237 BSD domain-containing protein (F15K9.5 protein) (Uncharacterized protein At1g03350),BSD domain-containing protein chloroplast [GO:0009507] locus:2014460;,locus:2123231; AT1G03350,AT4G13110 BSD domain-containing protein Os01g0273300 protein,Os07g0647400 protein Q5NBF0,Q8LIF0 Q5NBF0_ORYSJ,Q8LIF0_ORYSJ Os01g0273300 OSNPB_010273300 P0693B08.37,OJ1316_A04.113 P0503D09.130 Os07g0647400 OsJ_25364 OSNPB_070647400 ENOG411DSJ6 Q93ZD1,Q9LFB0,A0A1P8BC56 Q93ZD1_ARATH,Q9LFB0_ARATH,A0A1P8BC56_ARATH At5g01260/F7J8_240 (Carbohydrate-binding-like fold),Carbohydrate-binding-like fold (Uncharacterized protein F7J8_240),Carbohydrate-binding-like fold 34179,43573,33219 At5g01260/F7J8_240 (Carbohydrate-binding-like fold),Carbohydrate-binding-like fold (Uncharacterized protein F7J8_240),Carbohydrate-binding-like fold starch binding [GO:2001070] locus:2150119; AT5G01260 Starch binding domain Os05g0446900 protein (cDNA clone:J033061P17, full insert sequence) Q688J4 Q688J4_ORYSJ Os05g0446900 Os05g0446900 OSJNBb0012G21.3 OSNPB_050446900 ENOG411DSJ0 GATA24,GATA28,ZML1 Q8GXL7,Q8H1G0,B3H4L8 GAT24_ARATH,GAT28_ARATH,B3H4L8_ARATH GATA transcription factor 24 (Protein TIFY 2B) (ZIM-like 1 protein),GATA transcription factor 28 (Protein TIFY 2A) (ZIM-like 2 protein),ZIM-like 1 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. 32883,33130,24006 GATA transcription factor 24 (Protein TIFY 2B) (ZIM-like 1 protein),GATA transcription factor 28 (Protein TIFY 2A) (ZIM-like 2 protein),ZIM-like 1 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154],nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; sequence-specific DNA binding [GO:0043565]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154],nucleus [GO:0005634] TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. locus:505006360;,locus:2017582; AT3G21175,AT1G51600 gata transcription factor GATA transcription factor 17 (OsGATA17) (Protein TIFY 2a) (OsTIFY2a),GATA transcription factor 20 (OsGATA20) (Protein TIFY 2b) (OsTIFY2b),Os06g0698900 protein Q6Z433,Q5Z4U5,A0A0P0X0Y6 GAT17_ORYSJ,GAT20_ORYSJ,A0A0P0X0Y6_ORYSJ GATA17 TIFY2A Os02g0148500 LOC_Os02g05510 P0479D12.16,GATA20 TIFY2B Os06g0698900 LOC_Os06g48534 P0468G03.1 P0545E05.36,Os06g0698900 OSNPB_060698900 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. ENOG411DSJ2 SKIP31 Q9FHK0 SKI31_ARATH F-box protein SKIP31 (SKP1-interacting partner 31) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 36238 F-box protein SKIP31 (SKP1-interacting partner 31) protein ubiquitination [GO:0016567] locus:2163503; AT5G45360 F-Box protein F-box family protein-like (Os06g0709100 protein) (cDNA clone:006-201-G12, full insert sequence),Os06g0709100 protein (Fragment) Q5Z9H2,Q0D9L9 Q5Z9H2_ORYSJ,Q0D9L9_ORYSJ Os06g0709100 OsJ_22620 OSNPB_060709100 P0655A07.13,Os06g0709100 Os06g0709100 OSNPB_060709100 ENOG411E34C Q5XV62,B3H5G3 Q5XV62_ARATH,B3H5G3_ARATH ArfGap/RecO-like zinc finger domain-containing protein R-ATH-8856825; 68800,68928 ArfGap/RecO-like zinc finger domain-containing protein GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872] locus:2125697; AT4G32630 ArfGap NA NA NA NA NA NA NA ENOG411DX53 MVA3.1 Q8L8R4 Q8L8R4_ARATH At5g17660 (Uncharacterized protein At5g17660) (tRNA (Guanine-N-7) methyltransferase) 35486 At5g17660 (Uncharacterized protein At5g17660) (tRNA (Guanine-N-7) methyltransferase) tRNA methyltransferase complex [GO:0043527]; tRNA (guanine-N7-)-methyltransferase activity [GO:0008176]; RNA (guanine-N7)-methylation [GO:0036265] locus:2175971; AT5G17660 tRNA (guanine-N(7)-)-methyltransferase-like Os01g0535900 protein (Fragment) A0A0P0V3N4,A0A0P0V3M2 A0A0P0V3N4_ORYSJ,A0A0P0V3M2_ORYSJ Os01g0535900 OSNPB_010535900 ENOG411DX52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os12g0512100 protein (Sugar transporter family protein, expressed) (cDNA clone:J023051G03, full insert sequence) Q2QPZ5 Q2QPZ5_ORYSJ LOC_Os12g32760 Os12g0512100 OSNPB_120512100 ENOG411DX51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cupin superfamily (DUF985) Os06g0198500 protein,Os06g0198600 protein (Fragment) Q69K64,A0A0P0WTM4 Q69K64_ORYSJ,A0A0P0WTM4_ORYSJ Os06g0198500 B1172G12.16 OsJ_20457 OSNPB_060198500,Os06g0198600 OSNPB_060198600 ENOG411DX57 REN1 F4JQZ3,A0A1P8B965 REN1_ARATH,A0A1P8B965_ARATH Rho GTPase-activating protein REN1 (Protein ROP1 ENHANCER 1) (Rho-type GTPase-activating protein REN1),Rho GTPase activation protein (RhoGAP) with PH domain-containing protein DISRUPTION PHENOTYPE: Male gametophyte defect characterized by sterile pollen grains developing balloon-like tubes. {ECO:0000269|PubMed:19108776}. The ren1-3 pollen grains sometimes develop moderately bublous tubes but they are fertile (unlike the sterile pollen grains caused by the more severe alleles ren1-1 and ren1-2).,The sterile ren1-1 pollen grains from this heterozygous plant germinate precociously at a higher rate than wild type pollen tubes and they often form bulbous tubes that are incapable of adhering to or entering the stigma. The domain of ROP1 expression in the pollen tubes is expanded in these mutants. GFP:RIC4 which binds to the PM-localized active form of ROP1 is also visible across an abnormally broad area in the pollen tube tips of ren1-1 mutants.,The sterile ren1-2 mutant pollen grains from this heterozygous plant germinate precociously at a higher rate than wild type pollen tubes and they often form non-functional bulbous tubes. Complete male gametophyte defective-Z. Yang-2008 FUNCTION: Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Maintains the global inactivation of ARAC11/ROP1 at the apex in pollen tubes in order to regulate the polar cell growth. {ECO:0000269|PubMed:19108776}. 100627,76952 Rho GTPase-activating protein REN1 (Protein ROP1 ENHANCER 1) (Rho-type GTPase-activating protein REN1),Rho GTPase activation protein (RhoGAP) with PH domain-containing protein apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; cell cortex [GO:0005938]; exocytic vesicle [GO:0070382]; pollen tube [GO:0090406]; GTPase activator activity [GO:0005096]; Rho GTPase binding [GO:0017048]; activation of GTPase activity [GO:0090630]; negative regulation of Rho protein signal transduction [GO:0035024]; pollen germination [GO:0009846]; pollen tube adhesion [GO:0009865]; pollen tube development [GO:0048868]; pollen tube growth [GO:0009860]; positive regulation of GTPase activity [GO:0043547]; regulation of growth [GO:0040008]; signal transduction [GO:0007165],GTPase activator activity [GO:0005096]; signal transduction [GO:0007165] TISSUE SPECIFICITY: Expressed in pollen and pollen tubes. {ECO:0000269|PubMed:19108776}. locus:2121865; AT4G24580 RhoGAP Os03g0209800 protein (RhoGAP domain containing protein, expressed) (cDNA clone:J023113J17, full insert sequence),Os03g0256800 protein Q10Q51,A0A0N7KGY7 Q10Q51_ORYSJ,A0A0N7KGY7_ORYSJ LOC_Os03g11140 Os03g0209800 OSNPB_030209800,Os03g0256800 OSNPB_030256800 ENOG411DX56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RINGv OSJNBa0094O15.15 protein (OSJNBb0004G23.1 protein) (Os04g0105100 protein) (cDNA clone:001-204-H07, full insert sequence) (cDNA clone:J023080A01, full insert sequence) Q7XXI7 Q7XXI7_ORYSJ Os04g0105100 OsJ_13508 OSJNBa0094O15.15 OSJNBb0004G23.1 OSNPB_040105100 ENOG411DX55 RNR1 Q6NQJ6 RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial (AtmtRNaseII) (RNase II) (EC 3.1.13.1) (Protein EMBRYO DEFECTIVE 2730) (Ribonucleotide reductase 1) DISRUPTION PHENOTYPE: Shorter 3' nucleotide extensions of mitochondrial mRNAs and reduced accumulation of several chloroplast rRNA species. Germinates only on sucrose-containing media, with white cotyledons and pale green rosette leaves. {ECO:0000269|PubMed:15037609, ECO:0000269|PubMed:15891117}. Embryo defective; Cotyledon-D. Meinke-2002 FUNCTION: 3'-5' exoribonuclease that catalyzes 3' maturation of chloroplast and mitochondrion ribosomal RNAs; degrades short nucleotidic extensions to generate the mature 3'-ends. Involved in the maturation of 23S, 16S and 5S rRNAs. {ECO:0000269|PubMed:15037609, ECO:0000269|PubMed:15891117}. 3.1.13.1 90679 Ribonuclease II, chloroplastic/mitochondrial (AtmtRNaseII) (RNase II) (EC 3.1.13.1) (Protein EMBRYO DEFECTIVE 2730) (Ribonucleotide reductase 1) chloroplast [GO:0009507]; exosome (RNase complex) [GO:0000178]; mitochondrion [GO:0005739]; P-body [GO:0000932]; 3'-5'-exoribonuclease activity [GO:0000175]; exoribonuclease II activity [GO:0008859]; RNA binding [GO:0003723]; chloroplast organization [GO:0009658]; RNA catabolic process [GO:0006401]; rRNA processing [GO:0006364] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:15891117}. locus:2180172; AT5G02250 RNB Os01g0841800 protein Q0JHU4 Q0JHU4_ORYSJ Os01g0841800 Os01g0841800 OSNPB_010841800 ENOG411DX54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os09g0559800 protein (Putative SV2 related protein) Q653R2 Q653R2_ORYSJ Os09g0559800 OJ1065_E04.20 OSNPB_090559800 ENOG411DX59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411DX58 F4JNE3,F4JNE4,F4JNE2 F4JNE3_ARATH,F4JNE4_ARATH,F4JNE2_ARATH Pleckstrin homology (PH) domain-containing protein 471256,471008,471223 Pleckstrin homology (PH) domain-containing protein Golgi apparatus [GO:0005794]; plasmodesma [GO:0009506]; vacuole [GO:0005773] locus:2130594; AT4G17140 Plant protein of unknown function (DUF946) NA NA NA NA NA NA NA ENOG411E0W3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E0W0 F4IPV3,B3H6L8 F4IPV3_ARATH,B3H6L8_ARATH Arginine N-methyltransferase, putative (DUF688) 66232,62819 Arginine N-methyltransferase, putative (DUF688) methyltransferase activity [GO:0008168] locus:2052756; AT2G30990 Protein of unknown function (DUF688) Os01g0758900 protein Q5JLR2 Q5JLR2_ORYSJ Os01g0758900 Os01g0758900 B1131G08.29 OSNPB_010758900 ENOG411DX5A Q3ECP6,F4HYK6 GDL22_ARATH,F4HYK6_ARATH GDSL esterase/lipase At1g54790 (EC 3.1.1.-) (Extracellular lipase At1g54790),GDSL-like Lipase/Acylhydrolase superfamily protein ARA:AT1G54790-MONOMER; 3.1.1.- 45381,42309 GDSL esterase/lipase At1g54790 (EC 3.1.1.-) (Extracellular lipase At1g54790),GDSL-like Lipase/Acylhydrolase superfamily protein extracellular region [GO:0005576]; hydrolase activity, acting on ester bonds [GO:0016788]; lipid catabolic process [GO:0016042],hydrolase activity, acting on ester bonds [GO:0016788] locus:2199496; AT1G54790 GDSL esterase lipase Os05g0401000 protein (cDNA, clone: J065042E06, full insert sequence) B7F8G8 B7F8G8_ORYSJ Os05g0401000 OSNPB_050401000 ENOG411DX5G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY transcription factor NA NA NA NA NA NA NA ENOG411DX5K TMN4,TMN3,TMN2 Q9FHT4,Q9ZPS7,Q940S0 TMN4_ARATH,TMN3_ARATH,TMN2_ARATH Transmembrane 9 superfamily member 4 (Endomembrane protein 10) (Transmembrane nine protein 4) (AtTMN4),Transmembrane 9 superfamily member 3 (Endomembrane protein 9) (Transmembrane nine protein 3) (AtTMN3),Transmembrane 9 superfamily member 2 (Endomembrane protein 8) (Transmembrane nine protein 2) (AtTMN2) No increased tolerance to arsenic compared to wild type. 68079,68049,68084 Transmembrane 9 superfamily member 4 (Endomembrane protein 10) (Transmembrane nine protein 4) (AtTMN4),Transmembrane 9 superfamily member 3 (Endomembrane protein 9) (Transmembrane nine protein 3) (AtTMN3),Transmembrane 9 superfamily member 2 (Endomembrane protein 8) (Transmembrane nine protein 2) (AtTMN2) endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; trans-Golgi network [GO:0005802],endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; vacuolar membrane [GO:0005774],endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802] locus:2169100;,locus:2041160;,locus:2006872; AT5G37310,AT2G01970,AT1G14670 phagocytic receptor Transmembrane 9 superfamily member Q8H012,Q7G5M7,B7F4V5 Q8H012_ORYSJ,Q7G5M7_ORYSJ,B7F4V5_ORYSJ OJ1081D05.4 LOC_Os03g13380 Os03g0237000 OsJ_10070 OSNPB_030237000,LOC_Os10g02350 Os10g0112600 OSNPB_100112600,Os08g0162000 OSNPB_080162000 ENOG411DX5J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant PDR ABC transporter associated NA NA NA NA NA NA NA ENOG411DX5I Q94IU8 Q94IU8_ARATH Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g19050) 38425 Alpha/beta-Hydrolases superfamily protein (Uncharacterized protein At5g19050) hydrolase activity [GO:0016787] locus:2179634; AT5G19050 Protein of unknown function (DUF1749) Os07g0211800 protein (cDNA clone:J013035L06, full insert sequence),Os07g0211800 protein (cDNA clone:J013045P18, full insert sequence) B7EB72,Q7F1B1 B7EB72_ORYSJ,Q7F1B1_ORYSJ Os07g0211800 OSNPB_070211800,OJ1664_D08.103-1 Os07g0211800 OSJNBb0042J07.10-1 OSNPB_070211800 ENOG411DX5H CHR24 Q8W103,A0A1P8BG17 CHR24_ARATH,A0A1P8BG17_ARATH Protein CHROMATIN REMODELING 24 (AtCHR24) (EC 3.6.4.-) (DNA excision repair protein CHR24),Chromatin remodeling 24 No visible phenotype.,Null allele.,Sensitive to gamma-irradiation and UV. Sensitive to UV light-A. Levy-2006 FUNCTION: DNA helicase that acts as an essential component of the spindle assembly checkpoint (By similarity). Probable chromatin remodeling factor that regulate homologous recombination (HR) and non-homologous recombination (NHR). {ECO:0000250|UniProtKB:Q2NKX8, ECO:0000269|PubMed:21968679, ECO:0000303|PubMed:16547115}. 3.6.4.- 122803,120914 Protein CHROMATIN REMODELING 24 (AtCHR24) (EC 3.6.4.-) (DNA excision repair protein CHR24),Chromatin remodeling 24 nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; DNA recombination [GO:0006310]; positive regulation of mitotic recombination [GO:0045951]; response to cadmium ion [GO:0046686],ATP binding [GO:0005524] locus:2160811; AT5G63950 DNA excision repair protein ERCC-6-like DNA repair helicase ERCC6-like (Os01g0636700 protein),Os04g0692700 protein,Os10g0566050 protein (Fragment),Os04g0692750 protein Q5VNP2,A0A0N7KJZ6,A0A0P0XXF1,A0A0P0WGX7 Q5VNP2_ORYSJ,A0A0N7KJZ6_ORYSJ,A0A0P0XXF1_ORYSJ,A0A0P0WGX7_ORYSJ Os01g0636700 Os01g0636700 OSNPB_010636700 P0696E01.11,Os04g0692700 OSNPB_040692700,Os10g0566050 OSNPB_100566050,Os04g0692750 OSNPB_040692750 ENOG411DX5N HDC1 Q8RWV9 Q8RWV9_ARATH Uncharacterized protein At5g08450 (Zinc finger CCCH domain protein) 104152 Uncharacterized protein At5g08450 (Zinc finger CCCH domain protein) nucleus [GO:0005634]; developmental vegetative growth [GO:0080186]; flower development [GO:0009908]; histone deacetylation [GO:0016575]; response to abscisic acid [GO:0009737]; response to salt [GO:1902074]; seed germination [GO:0009845] locus:2150753; AT5G08450 Histone deacetylation protein Rxt3 Os07g0477500 protein Q0D6I0 Q0D6I0_ORYSJ Os07g0477500 Os07g0477500 OSNPB_070477500 ENOG411DX5R TCX6,TCX5 Q9SL70,Q9SZD1,A0A1P8B2C5 TCX6_ARATH,TCX5_ARATH,A0A1P8B2C5_ARATH Protein tesmin/TSO1-like CXC 6 (AtTCX6),Protein tesmin/TSO1-like CXC 5 (AtTCX5),Tesmin/TSO1-like CXC domain-containing protein FUNCTION: Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. 61313,64636,58580 Protein tesmin/TSO1-like CXC 6 (AtTCX6),Protein tesmin/TSO1-like CXC 5 (AtTCX5),Tesmin/TSO1-like CXC domain-containing protein nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275],nucleus [GO:0005634]; metal ion binding [GO:0046872]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355] TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. locus:2061683;,locus:2119981; AT2G20110,AT4G29000 tesmin TSO1-like CXC Os01g0761100 protein (Tesmin-like) (cDNA clone:J033127O09, full insert sequence),Os06g0332700 protein Q5JMF9,A0A0P0WWF9 Q5JMF9_ORYSJ,A0A0P0WWF9_ORYSJ Os01g0761100 Os01g0761100 OSNPB_010761100 P0512C01.15,Os06g0332700 OSNPB_060332700 ENOG411DX5P ndhU Q84VQ4 NDHU_ARATH NAD(P)H-quinone oxidoreductase subunit U, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit U) (NDH subunit U) (NADH-plastoquinone oxidoreductase subunit U) (Protein CHLORORESPIRATORY REDUCTION L) DISRUPTION PHENOTYPE: Malfunction of the NDH complex. {ECO:0000269|PubMed:21505067}. FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. {ECO:0000305}. 1.6.5.- 24438 NAD(P)H-quinone oxidoreductase subunit U, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit U) (NDH subunit U) (NADH-plastoquinone oxidoreductase subunit U) (Protein CHLORORESPIRATORY REDUCTION L) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]; oxidoreductase activity [GO:0016491]; quinone binding [GO:0048038]; transport [GO:0006810] locus:1005716171; AT5G21430 DNAJ heat shock N-terminal domain-containing protein DnaJ domain containing protein, expressed (Os12g0498500 protein) Q2QQD1 Q2QQD1_ORYSJ Os12g0498500 LOC_Os12g31460 OSNPB_120498500 ENOG411DX5W Q9LIN2 GDL53_ARATH GDSL esterase/lipase At3g26430 (EC 3.1.1.-) (Extracellular lipase At3g26430) reduced expression of atRZ-1a,no expression of atRZ-1a ARA:AT3G26430-MONOMER; 3.1.1.- 42062 GDSL esterase/lipase At3g26430 (EC 3.1.1.-) (Extracellular lipase At3g26430) extracellular region [GO:0005576]; lipase activity [GO:0016298]; lipid catabolic process [GO:0016042] locus:2079286; AT3G26430 GDSL esterase lipase Os07g0586100 protein (Putative early nodulin 8) (cDNA clone:J023092E11, full insert sequence),Os07g0586200 protein (Putative early nodulin 8) (cDNA clone:J033067M09, full insert sequence),Os07g0586200 protein (Fragment) Q7XHN5,Q7XHN4,A0A0P0X8E6,A0A0P0X7W8 Q7XHN5_ORYSJ,Q7XHN4_ORYSJ,A0A0P0X8E6_ORYSJ,A0A0P0X7W8_ORYSJ OJ1113_E01.104 Os07g0586100 OsJ_24919 OSNPB_070586100,OJ1113_E01.105-1 Os07g0586200 OsJ_24920 OSNPB_070586200,Os07g0586200 OSNPB_070586200 ENOG411DX5U PAO Q9FYC2 PAO_ARATH Pheophorbide a oxygenase, chloroplastic (AtPaO) (Pheide a oxygenase) (EC 1.14.15.17) (Accelerated cell death 1) (Lethal leaf-spot 1 homolog) (Lls1) In constant darkness chlorophyll is retained resulting in a stay-green phenotype.,This mutant develops a lesion-mimic phenotype on the leaves similar to that of several acd1 mutants. The lesions occur in a development-related light-dependent fashion coinciding with the initiation of leaf senescence in the wild-type. Premature cell death was observed in the flowers. Sepals and petals started to degrade earlier than that of wild-type resulting in flowers that fail to fully open. 40% of seeds aborts at an early stage of development. Necrotic lesions-A. Tanaka-2003 FUNCTION: Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with red chlorophyll catabolite reductase (RCCR). Creates the intermediate RCC through the opening of the porphyrin macrocycle by the introduction of one atom of molecular oxygen at the alpha-methine bridge. Seems to be specific for pheide a. Belongs to the chlorophyll catabolic enzymes (CCEs). {ECO:0000269|PubMed:14657372, ECO:0000269|PubMed:14701922}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll degradation. ARA:AT3G44880-MONOMER;MetaCyc:AT3G44880-MONOMER; 1.14.12.20; 1.14.15.17 60756 Pheophorbide a oxygenase, chloroplastic (AtPaO) (Pheide a oxygenase) (EC 1.14.15.17) (Accelerated cell death 1) (Lethal leaf-spot 1 homolog) (Lls1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; 2 iron, 2 sulfur cluster binding [GO:0051537]; chlorophyllide a oxygenase [overall] activity [GO:0010277]; iron-sulfur cluster binding [GO:0051536]; metal ion binding [GO:0046872]; pheophorbide a oxygenase activity [GO:0032441]; cell death [GO:0008219]; chlorophyll catabolic process [GO:0015996]; defense response to bacterium, incompatible interaction [GO:0009816]; flower development [GO:0009908]; fruit development [GO:0010154] DEVELOPMENTAL STAGE: Up-regulated during senescence. {ECO:0000269|PubMed:23200839}. locus:2082122; AT3G44880 pheophorbide a oxygenase Os03g0146400 protein Q0DV66 Q0DV66_ORYSJ Os03g0146400 Os03g0146400 OSNPB_030146400 ENOG411DX5T AK1 Q9LYU8 AK1_ARATH Aspartokinase 1, chloroplastic (EC 2.7.2.4) (Aspartate kinase 1) FUNCTION: Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. MISCELLANEOUS: Only one ACT domain (ACT1) is implicated in effector binding. PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4.; PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3.; PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5. ARA:AT5G13280-MONOMER; 2.7.2.4; 2.7.2.4 62298 Aspartokinase 1, chloroplastic (EC 2.7.2.4) (Aspartate kinase 1) chloroplast stroma [GO:0009570]; aspartate kinase activity [GO:0004072]; ATP binding [GO:0005524]; cellular amino acid biosynthetic process [GO:0008652]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088] locus:2183896; AT5G13280 Aspartokinase Os07g0300900 protein (Putative monofunctional aspartokinase) (cDNA clone:001-042-D10, full insert sequence),Os07g0300900 protein (Putative monofunctional aspartokinase),Aspartokinase (EC 2.7.2.4) (Fragment) Q6YS33,Q6YS32,Q0DLR8 Q6YS33_ORYSJ,Q6YS32_ORYSJ,Q0DLR8_ORYSJ B1114D08.10-1 B1032F05.40-1 Os07g0300900 OSNPB_070300900,B1114D08.10-2 B1032F05.40-2 Os07g0300900 OSNPB_070300900,Os03g0850400 OSNPB_030850400 ENOG411DX5Z MDH9.6 Q9FII0,F4K1J1 Q9FII0_ARATH,F4K1J1_ARATH Calcineurin-like metallo-phosphoesterase superfamily protein (Uncharacterized protein At5g42370),Calcineurin-like metallo-phosphoesterase superfamily protein 50339,51132 Calcineurin-like metallo-phosphoesterase superfamily protein (Uncharacterized protein At5g42370),Calcineurin-like metallo-phosphoesterase superfamily protein integral component of membrane [GO:0016021],extracellular region [GO:0005576]; integral component of membrane [GO:0016021]; chitin binding [GO:0008061]; chitinase activity [GO:0004568]; chitin catabolic process [GO:0006032] locus:2162316; AT5G42370 PhoD-like phosphatase Os02g0592200 protein (Phosphodiesterase/alkaline phosphatase D-like protein) (cDNA clone:J023030E07, full insert sequence) Q69L73 Q69L73_ORYSJ Os02g0592200 Os02g0592200 OSJNBa0016G10.11 OSNPB_020592200 ENOG411DX5Y EHD1,EHD2 Q94CF0,B3LF48 EHD1_ARATH,EHD2_ARATH EH domain-containing protein 1 (AtEHD1) (EC 3.6.5.2),EH domain-containing protein 2 (AtEHD2) (EC 3.6.5.2) DISRUPTION PHENOTYPE: Early flowering in short-day growth conditions (PubMed:18547399). Slightly slower endocytosis whith delayed internalization (PubMed:18547399, PubMed:23342166). Reduced Brefeldin A sensitivity (PubMed:23342166). {ECO:0000269|PubMed:18547399, ECO:0000269|PubMed:23342166}.,DISRUPTION PHENOTYPE: Early flowering in short-day growth conditions. {ECO:0000269|PubMed:18547399}. FUNCTION: Involved in endocytosis positive regulation. Acts in early endocytic membrane fusion and membrane trafficking of recycling endosomes (PubMed:18547399, PubMed:23342166). Confers salt tolerance (PubMed:23342166). {ECO:0000269|PubMed:18547399, ECO:0000269|PubMed:23342166}.,FUNCTION: Involved in endocytosis negative regulation, probably by influencing actin organization. Acts in early endocytic membrane fusion and membrane trafficking of recycling endosomes. Exhibits an inhibitory effect on endocytosis when over-expressed. {ECO:0000269|PubMed:18547399, ECO:0000269|PubMed:19936242}. 3.6.5.2 61230,61383 EH domain-containing protein 1 (AtEHD1) (EC 3.6.5.2),EH domain-containing protein 2 (AtEHD2) (EC 3.6.5.2) cytoplasm [GO:0005737]; endosome [GO:0005768]; endosome membrane [GO:0010008]; intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; endocytic recycling [GO:0032456]; endocytosis [GO:0006897]; hyperosmotic salinity response [GO:0042538]; protein homooligomerization [GO:0051260],cytoplasm [GO:0005737]; endosome membrane [GO:0010008]; intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; calcium ion binding [GO:0005509]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; endocytosis [GO:0006897]; protein homooligomerization [GO:0051260]; regulation of actin cytoskeleton organization [GO:0032956] locus:2092419;,locus:2135462; AT3G20290,AT4G05520 EH domain-containing protein Os02g0158100 protein (Putative receptor Mediated Endocytosis RME-1),Os06g0687800 protein (Putative receptor-mediated endocytosis 1 isoform I) (cDNA clone:J023133F22, full insert sequence),Os02g0158100 protein (Fragment) Q6ET46,Q653F5,A0A0P0VEY7 Q6ET46_ORYSJ,Q653F5_ORYSJ,A0A0P0VEY7_ORYSJ Os02g0158100 Os02g0158100 B1103G11.14 OsJ_05448 OSNPB_020158100 P0419H03.34,Os06g0687800 OsJ_22427 OSNPB_060687800 P0623A10.32 P0661G04.5,Os02g0158100 OSNPB_020158100 ENOG411E732 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0497400 protein Q6K927 Q6K927_ORYSJ OJ1288_D09.19 Os02g0497400 OSNPB_020497400 ENOG411E34G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA BZIP transcription factor Os05g0495200 protein (cDNA clone:002-110-E11, full insert sequence) (cDNA clone:J023018E07, full insert sequence),Os11g0139500 protein Q65X73,A0A0P0XYV6 Q65X73_ORYSJ,A0A0P0XYV6_ORYSJ Os05g0495200 Os05g0495200 OJ1579_G03.9 OsJ_17245 OSNPB_050495200,Os11g0139500 OSNPB_110139500 ENOG411E34H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-conjugating enzyme NA NA NA NA NA NA NA ENOG411E601 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PLAC8 family Os04g0461600 protein (Fragment) Q0JCM6 Q0JCM6_ORYSJ Os04g0461600 Os04g0461600 OSNPB_040461600 ENOG411DU58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc CTR1-like kinase kinase kinase-like (Os02g0241600 protein) Q6ER39 Q6ER39_ORYSJ Os02g0241600 Os02g0241600 OSJNBa0082C09.29 OSNPB_020241600 ENOG411DU59 TERC,PDE149 F4JZG9,A0A1P8BDK4 TERC_ARATH,A0A1P8BDK4_ARATH Thylakoid membrane protein TERC, chloroplastic (Protein PIGMENT DEFECTIVE 149) (Protein TELLURITE RESISTANCE C) (AtTerC),Integral membrane TerC family protein DISRUPTION PHENOTYPE: Pigment deficiency and seedling lethality. {ECO:0000269|PubMed:18429937}. Seedling lethal (inferred from pigment defect)-D. Meinke-2002 FUNCTION: Integral thylakoid membrane protein that plays a crucial role in thylakoid membrane biogenesis and thylakoid formation in early chloroplast development (PubMed:18429937). Is essential for de novo synthesis of photosystem II (PSII) core proteins and required for efficient insertion of thylakoid membrane proteins, presumably via interaction with ALB3. May assist synthesis of thylakoid membrane proteins at the membrane insertion step (PubMed:24612058). {ECO:0000269|PubMed:18429937, ECO:0000269|PubMed:24612058}. 41900,37644 Thylakoid membrane protein TERC, chloroplastic (Protein PIGMENT DEFECTIVE 149) (Protein TELLURITE RESISTANCE C) (AtTerC),Integral membrane TerC family protein chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; seedling development [GO:0090351]; thylakoid membrane organization [GO:0010027],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems and flowers. {ECO:0000269|PubMed:18429937}. locus:2177053; AT5G12130 Integral membrane protein TerC family Os05g0121200 protein (Putative transmembrane protein) Q60F47 Q60F47_ORYSJ Os05g0121200 OJ1001_G01.5 OsJ_16932 OSNPB_050121200 ENOG411DU52 MOP10.2 Q9FFG6 Q9FFG6_ARATH At5g05480/MOP10_2 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein) ARA:AT5G05480-MONOMER; 68435 At5g05480/MOP10_2 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein) vacuole [GO:0005773] locus:2169662; AT5G05480 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase Os05g0395000 protein (cDNA clone:001-200-H03, full insert sequence) (cDNA clone:J013105M15, full insert sequence) Q75HW4 Q75HW4_ORYSJ Os05g0395000 Os05g0395000 OsJ_18446 OSJNBa0014C03.11 OSJNBb0092G21.1 OSNPB_050395000 ENOG411DU53 CM2 Q9S7H4 CM2_ARATH Chorismate mutase 2 (AtCM2) (EC 5.4.99.5) (CM-2) PATHWAY: Metabolic intermediate biosynthesis; prephenate biosynthesis; prephenate from chorismate: step 1/1. ARA:AT5G10870-MONOMER;MetaCyc:AT5G10870-MONOMER; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 5.4.99.5 30491 Chorismate mutase 2 (AtCM2) (EC 5.4.99.5) (CM-2) cytoplasm [GO:0005737]; cytosol [GO:0005829]; chorismate mutase activity [GO:0004106]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate metabolic process [GO:0046417] TISSUE SPECIFICITY: Expressed in roots, stems, cauline leaves and flowers, and at lower levels in rosette leaves and siliques. {ECO:0000269|PubMed:8953244}. locus:2183755; AT5G10870 chorismate mutase Chorismate mutase (EC 5.4.99.5) Q6H819 Q6H819_ORYSJ Os02g0180500 Os02g0180500 OJ1297_C09.6 OsJ_05625 OSNPB_020180500 ENOG411DU50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucuronic acid decarboxylase Os03g0278000 protein (RmlD substrate binding domain containing protein, expressed) (UDP-glucuronic acid decarboxylase) (cDNA clone:006-303-H02, full insert sequence) (cDNA clone:J023132F05, full insert sequence),Os03g0278000 protein (Fragment) Q8W3J0,A0A0P0VWQ0 Q8W3J0_ORYSJ,A0A0P0VWQ0_ORYSJ UXS-3 LOC_Os03g16980 Os03g0278000 OsJ_10342 OSNPB_030278000,Os03g0278000 OSNPB_030278000 ENOG411DU51 TSS F4JKH6,A0A1P8AR50,A0A1P8ATX7,F4HZK4,F4HS98,F4HS99 TSS_ARATH,A0A1P8AR50_ARATH,A0A1P8ATX7_ARATH,F4HZK4_ARATH,F4HS98_ARATH,F4HS99_ARATH Protein TSS (TPR-domain suppressor of STIMPY),Tetratricopeptide repeat (TPR)-like superfamily protein DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:21185286}. FUNCTION: Negatively regulates meristematic tissue proliferation by integrating developmental signals with carbon source availability. May act as the scaffold of a protein complex, which sequesters key factors that are required for the G2 to M transition in meristematic tissues. {ECO:0000269|PubMed:21185286}. MISCELLANEOUS: The sucrose repression of TSS is a response specific to the rescue of stip mutants, and the presence of STIP in the wild-type may be sufficient to repress TSS expression even under sugar deprivation. {ECO:0000303|PubMed:21185286}. 199116,197741,147948,177634,197500,198774 Protein TSS (TPR-domain suppressor of STIMPY),Tetratricopeptide repeat (TPR)-like superfamily protein cell cycle [GO:0007049]; multicellular organism development [GO:0007275]; response to abscisic acid [GO:0009737],cytosol [GO:0005829],cytosol [GO:0005829]; nucleus [GO:0005634] TISSUE SPECIFICITY: Expressed in the non-epidermal tissues of the true leaves. Not detected in the vegetative shoot meristem and leaf primordia. {ECO:0000269|PubMed:21185286}. locus:2133012;,locus:2037783;,locus:2035327; AT4G28080,AT1G15290,AT1G01320 tetratricopeptide repeat domain containing protein Os02g0255700 protein,OSJNBa0070O11.2 protein (Os04g0645100 protein),Os04g0645100 protein Q0E2A9,Q7XQE6,A0A0P0WFT1 Q0E2A9_ORYSJ,Q7XQE6_ORYSJ,A0A0P0WFT1_ORYSJ Os02g0255700 Os02g0255700 OSNPB_020255700,Os04g0645100 OsJ_16398 OSJNBa0070O11.2 OSNPB_040645100,Os04g0645100 OSNPB_040645100 ENOG411DU56 OR,ORLIKE Q9FKF4,Q8VYD8,F4K2C6 ORANG_ARATH,ORLIK_ARATH,F4K2C6_ARATH Protein ORANGE, chloroplastic (AtOR) (DnaJ-like cysteine-rich domain-containing protein OR),Protein ORANGE-LIKE, chloroplastic (DnaJ-like cysteine-rich domain-containing protein Or-like),Chaperone protein dnaJ-like protein FUNCTION: Involved in chromoplast differentiation. Associated with a cellular process that triggers the differentiation of pro-plastids or other non-colored plastids into chromoplasts for carotenoid accumulation (PubMed:24267591). Is associated with carotenoid accumulation in chromoplasts (PubMed:26224804). Functions as a major regulator of the phytoene synthase PSY1 protein level and activity. Modulates carotenoid biosynthesis by means of post-transcriptional regulation of PSY1 (PubMed:25675505). Modulates carotenoid biosynthesis in part by up-regulating a series of endogenous carotenogenic genes (PubMed:25857664). {ECO:0000269|PubMed:24267591, ECO:0000269|PubMed:25675505, ECO:0000269|PubMed:25857664, ECO:0000269|PubMed:26224804}.,FUNCTION: May be associated with accumulation of carotenoids in chromoplasts. {ECO:0000305|PubMed:26224804}. MISCELLANEOUS: Its sequence is related to the DnaJ family but lacks the J domain. The CR-type-like region is similar to CR-type zinc-fingers. {ECO:0000305}. 33790,34516,25442 Protein ORANGE, chloroplastic (AtOR) (DnaJ-like cysteine-rich domain-containing protein OR),Protein ORANGE-LIKE, chloroplastic (DnaJ-like cysteine-rich domain-containing protein Or-like),Chaperone protein dnaJ-like protein chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; positive regulation of carotenoid biosynthetic process [GO:1904143]; protein stabilization [GO:0050821],chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; positive regulation of carotenoid biosynthetic process [GO:1904143]; protein stabilization [GO:0050821],integral component of membrane [GO:0016021] locus:2151556;,locus:2152845; AT5G61670,AT5G06130 NA Chaperone protein dnaJ-like (Os02g0651300 protein) (cDNA clone:J013095B06, full insert sequence),Chaperone protein dnaJ-related-like (Os02g0535000 protein),Os02g0651300 protein (Fragment) Q6H3Y3,Q6EPX0,A0A0P0VME2 Q6H3Y3_ORYSJ,Q6EPX0_ORYSJ,A0A0P0VME2_ORYSJ Os02g0651300 Os02g0651300 OSJNBb0012J10.22 OSNPB_020651300,Os02g0535000 B1136H02.21 OJ1112_G07.8 OsJ_07018 OSNPB_020535000,Os02g0651300 OSNPB_020651300 ENOG411DU57 DHS1 P29976,Q9SK84 AROF_ARATH,Q9SK84_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) (DAHP synthase 1) (Phospho-2-keto-3-deoxyheptonate aldolase 1),Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 1/7.,PATHWAY: Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 1/7. {ECO:0000256|RuleBase:RU363071}. ARA:AT1G22410-MONOMER; 2.5.1.54; Biosynthesis of secondary metabolites (01110),Phenylalanine, tyrosine and tryptophan biosynthesis (00400),Biosynthesis of amino acids (01230),Metabolic pathways (01100) 2.5.1.54 57979,58327 Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) (DAHP synthase 1) (Phospho-2-keto-3-deoxyheptonate aldolase 1),Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) chloroplast [GO:0009507]; mitochondrion [GO:0005739]; 3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]; response to wounding [GO:0009611],chloroplast [GO:0009507]; membrane [GO:0016020]; plastid [GO:0009536]; 3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]; aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423] locus:2005525;,locus:2009547; AT4G39980,AT1G22410 phospho-2-dehydro-3-deoxyheptonate aldolase Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) (DAHP synthase 1) (Phospho-2-keto-3-deoxyheptonate aldolase 1),Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DAHP synthase 2) (Phospho-2-keto-3-deoxyheptonate aldolase 2),Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54),Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) (Fragment) Q75LR2,Q75W16,Q0D4J5,Q6YTT3,A0A0P0XGY2,A0A0P0VY68,A0A0P0VY65 AROF_ORYSJ,AROG_ORYSJ,Q0D4J5_ORYSJ,Q6YTT3_ORYSJ,A0A0P0XGY2_ORYSJ,A0A0P0VY68_ORYSJ,A0A0P0VY65_ORYSJ DAHPS1 Os03g0389700 LOC_Os03g27230 OSJNBa0017N12.13,DAHPS2 Os07g0622200 LOC_Os07g42960 P0594D10.136,Os07g0622200 Os07g0622200 OsJ_25169 OSNPB_070622200,Os08g0484500 Os08g0484500 OsJ_27713 OSNPB_080484500 P0419H09.15,Os08g0484500 OSNPB_080484500,Os03g0389700 OSNPB_030389700 ENOG411DU54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GATA zinc finger domain containing protein GATA-type zinc finger transcription factor-like (Os01g0662800 protein),Os05g0567900 protein Q8LR32,A0A0P0WQZ5 Q8LR32_ORYSJ,A0A0P0WQZ5_ORYSJ Os01g0662800 OSNPB_010662800 P0671D01.30,Os05g0567900 OSNPB_050567900 ENOG411DU55 OTP43 Q9S7R4 PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial (Protein ORGANELLE TRANSCRIPT PROCESSING DEFECT 43) Segregates 25% embryo lethal. Leaves abnormally shaped (serrated). Embryo defective; Cotyledon; Very low germination rate; Slow growth; Dwarf; Curled leaves; Late flowering; Abnormal, non-germinating seeds-I. Small-2007 FUNCTION: Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). {ECO:0000269|PubMed:17965268}. 55082 Pentatricopeptide repeat-containing protein At1g74900, mitochondrial (Protein ORGANELLE TRANSCRIPT PROCESSING DEFECT 43) intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451]; RNA splicing [GO:0008380] locus:2027222; AT1G74900 Pentatricopeptide repeat-containing protein Os02g0679200 protein (Pentatricopeptide (PPR) repeat-containing protein-like) Q6EPP6 Q6EPP6_ORYSJ Os02g0679200 Os02g0679200 OSNPB_020679200 P0663F07.14 ENOG411DU5J SDIR1 Q9M2S6 SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 (EC 2.3.2.27) (Protein salt- and drought-induced RING finger1) (RING-type E3 ubiquitin transferase SDIR1) DISRUPTION PHENOTYPE: Longer primary root and NaCl and ABA insensitivity. {ECO:0000269|PubMed:17573536}. Homozygous mutant plants have decreased sensitivity to ABA. Long primary root-Q. Xie-2007 FUNCTION: E3 ubiquitin-protein ligase that acts as a positive regulator of abscisic acid-related stress signal transduction (PubMed:17573536, PubMed:18685183). Interacts with and ubiquitinates ATP1/SDIRIP1 to modulate ATP1/SDIRIP1 stability through the 26S proteasome pathway. Regulates abscisic acid (ABA) and salt stress responses by negatively affecting ATP1/SDIRIP1 stability. The SDIR1-ATP1/SDIRIP1 complex plays an important role in ABA signaling through the ubiquitination pathway (PubMed:25616872). {ECO:0000269|PubMed:17573536, ECO:0000269|PubMed:18685183, ECO:0000269|PubMed:25616872}. 2.3.2.27 30184 E3 ubiquitin-protein ligase SDIR1 (EC 2.3.2.27) (Protein salt- and drought-induced RING finger1) (RING-type E3 ubiquitin transferase SDIR1) endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; organelle membrane [GO:0031090]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination [GO:0016567]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414] DEVELOPMENTAL STAGE: Expressed at all developmental stages. {ECO:0000269|PubMed:17573536}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:17573536}. locus:2100021; AT3G55530 E3 ubiquitin-protein ligase Os03g0272300 protein (Zinc finger family protein, putative, expressed),Os03g0272300 protein (Fragment) Q10NE1,A0A0P0VW46 Q10NE1_ORYSJ,A0A0P0VW46_ORYSJ Os03g0272300 LOC_Os03g16570 OsJ_10309 OSNPB_030272300,Os03g0272300 OSNPB_030272300 ENOG411DU5K Q9ZU31,Q9ZU29 PP138_ARATH,PP139_ARATH Pentatricopeptide repeat-containing protein At2g01360,Pentatricopeptide repeat-containing protein At2g01390 Embryo defective; Cotyledon-D. Meinke-2011 20335,65603 Pentatricopeptide repeat-containing protein At2g01360,Pentatricopeptide repeat-containing protein At2g01390 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2038841; AT2G01360,AT2G01390 Pentatricopeptide repeat-containing protein Os10g0358700 protein (Pentatricopeptide, putative, expressed) (cDNA clone:J013132H24, full insert sequence) (cDNA clone:J033029A13, full insert sequence) Q7XFE8 Q7XFE8_ORYSJ Os10g0358700 LOC_Os10g21470 Os10g0358700 OSNPB_100358700 ENOG411DU5H TL17,MNC6.3 P81760,A0A1P8BAQ0,F4JX83 TL17_ARATH,A0A1P8BAQ0_ARATH,F4JX83_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic (P17.4),Tetratricopeptide repeat (TPR)-like superfamily protein 25644,28254,27225 Thylakoid lumenal 17.4 kDa protein, chloroplastic (P17.4),Tetratricopeptide repeat (TPR)-like superfamily protein chloroplast thylakoid lumen [GO:0009543],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; thylakoid [GO:0009579]; thylakoid lumen [GO:0031977] locus:2168596; AT5G53490 thylakoid lumenal 17.4 kDa protein Os10g0502000 protein (Thylakoid lumenal 17.4 kDa protein, chloroplast, putative, expressed) (cDNA clone:J013103I15, full insert sequence) Q8LNF2 Q8LNF2_ORYSJ Os10g0502000 LOC_Os10g35810 Os10g0502000 OsJ_32066 OSJNBa0078O01.30 OSNPB_100502000 ENOG411DU5I FBL12 Q9SRR1,A0A1I9LMC6 FBL12_ARATH,A0A1I9LMC6_ARATH F-box/LRR-repeat protein 12,RNI-like superfamily protein 43677,40670 F-box/LRR-repeat protein 12,RNI-like superfamily protein locus:2079721; AT3G07550 F-box LRR-repeat protein F-box protein family, AtFBL12, putative (Leucine Rich Repeat family protein, expressed) (Os11g0264200 protein) (cDNA clone:J023132O20, full insert sequence) (cDNA clone:J023134E03, full insert sequence) Q53LU3 Q53LU3_ORYSJ Os11g0264200 LOC_Os11g16280 Os11g0264200 OsJ_33566 OSNPB_110264200 ENOG411DU5N Q94A68 Y1669_ARATH Uncharacterized oxidoreductase At1g06690, chloroplastic (EC 1.-.-.-) ARA:AT1G06690-MONOMER; 1.-.-.- 41497 Uncharacterized oxidoreductase At1g06690, chloroplastic (EC 1.-.-.-) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast thylakoid membrane [GO:0009535]; plastoglobule [GO:0010287]; oxidoreductase activity [GO:0016491] locus:2009120; AT1G06690 Aldo/keto reductase family Os07g0143000 protein (cDNA clone:J013124N22, full insert sequence) Q0D8N4 Q0D8N4_ORYSJ Os07g0143000 Os07g0143000 OSNPB_070143000 ENOG411DU5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OPT oligopeptide transporter protein Probable metal-nicotianamine transporter YSL16 (Protein YELLOW STRIPE LIKE 16) (OsYSL16) Q7XN54 YSL16_ORYSJ YSL16 Os04g0542800 LOC_Os04g45900 OSJNBb0103I08.15 FUNCTION: May be involved in the transport of nicotianamine-chelated metals. {ECO:0000250}. ENOG411DU5B THI1 Q38814 THI4_ARATH Thiamine thiazole synthase, chloroplastic (Thiazole biosynthetic enzyme) Seedling lethal without exogenous thiamine-K. Pawlowski-1994 FUNCTION: Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance. Acts as a positive regulator for the abscisic acid-induced activation of slow type anion channels during stomatal closure by repressing CPK33 kinase activity. {ECO:0000255|HAMAP-Rule:MF_03158, ECO:0000269|PubMed:12941878, ECO:0000269|PubMed:24637331, ECO:0000269|PubMed:26662273, ECO:0000269|PubMed:8790291}. MetaCyc:AT5G54770-MONOMER; 36664 Thiamine thiazole synthase, chloroplastic (Thiazole biosynthetic enzyme) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; stromule [GO:0010319]; thylakoid [GO:0009579]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; protein domain specific binding [GO:0019904]; protein homodimerization activity [GO:0042803]; zinc ion binding [GO:0008270]; cellular response to DNA damage stimulus [GO:0006974]; oxazole or thiazole biosynthetic process [GO:0018131]; response to cold [GO:0009409]; thiamine biosynthetic process [GO:0009228]; thiazole biosynthetic process [GO:0052837] DEVELOPMENTAL STAGE: Expressed throughout develpoment. {ECO:0000269|PubMed:15897230}. TISSUE SPECIFICITY: Expressed at high levels in chloroplast-containing parenchymatic cells of leaves, inflorescence shoots and flowers, and at lower levels in the vascular system (PubMed:8771789). In young plants, detected in roots and shoots including cotyledons, leaves and hypocotyls (PubMed:12941878). Also observed in apical meristematic regions, siliques and embryos (PubMed:15897230). Low expression in roots, limited to the vascular tissue (PubMed:15897230). Broadly expressed in roots, cotyledons, leaves, hypocotyls, inflorescences, siliques, and strongly in guard cells (PubMed:26662273). {ECO:0000269|PubMed:12941878, ECO:0000269|PubMed:15897230, ECO:0000269|PubMed:26662273, ECO:0000269|PubMed:8771789}. locus:2160130; AT5G54770 Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT) an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance Thiamine thiazole synthase, chloroplastic (Thiazole biosynthetic enzyme),Os07g0529600 protein Q7XXS4,A0A0N7KNK4 Q7XXS4_ORYSJ,A0A0N7KNK4_ORYSJ THI1 Os07g0529600 OSNPB_070529600,Os07g0529600 OSNPB_070529600 FUNCTION: Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance. {ECO:0000256|HAMAP-Rule:MF_03158}. ENOG411DU5C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA avr9 Cf-9 rapidly elicited protein Os03g0270500 protein (Fragment),Os08g0236000 protein,Os10g0380300 protein Q0DT39,A3BQY7,Q338X5 Q0DT39_ORYSJ,A3BQY7_ORYSJ,Q338X5_ORYSJ Os03g0270500 OSNPB_030270500,Os08g0236000 OsJ_26523 OSNPB_080236000,Os10g0380300 LOC_Os10g23840 OsJ_31321 OSNPB_100380300 ENOG411DU5A F4K1C7,F4IAF5,F4IAF6,A0A1P8AYZ7,F4K6Z1,F4ILW4 F4K1C7_ARATH,F4IAF5_ARATH,F4IAF6_ARATH,A0A1P8AYZ7_ARATH,F4K6Z1_ARATH,F4ILW4_ARATH Uncharacterized protein,ARM repeat superfamily protein 109854,108945,111442,98885,114105,114336 Uncharacterized protein,ARM repeat superfamily protein plasma membrane [GO:0005886] locus:2148443;,locus:2198846;,locus:2178953;,locus:2054416; AT5G26850,AT1G05960,AT5G21080,AT2G41830 cyclin-related protein Cyclin, putative, expressed (Os03g0308200 protein) (cDNA clone:J023136H15, full insert sequence),Cyclin-like protein (Os02g0143200 protein),Cyclin-like protein (Os07g0205900 protein) (cDNA clone:J023044A22, full insert sequence),Cyclin-like (Os01g0898300 protein),Cyclin-like protein (Os02g0780500 protein) (cDNA clone:J023077P14, full insert sequence),Os07g0205900 protein (Fragment),Os03g0308200 protein (Fragment) Q10MI0,Q6YXW5,Q6ZIX9,Q5N857,Q6K7F3,A0A0N7KN39,A0A0N7KH50 Q10MI0_ORYSJ,Q6YXW5_ORYSJ,Q6ZIX9_ORYSJ,Q5N857_ORYSJ,Q6K7F3_ORYSJ,A0A0N7KN39_ORYSJ,A0A0N7KH50_ORYSJ LOC_Os03g19520 Os03g0308200 OSNPB_030308200,Os02g0143200 OSJNBa0064G16.4 OSNPB_020143200,Os07g0205900 OJ1119_B04.8 OsJ_23500 OSNPB_070205900,Os01g0898300 Os01g0898300 OSNPB_010898300 P0506A10.15 P0674H09.32,Os02g0780500 OJ1293_A01.36 OSNPB_020780500,Os07g0205900 OSNPB_070205900,Os03g0308200 OSNPB_030308200 ENOG411DU5F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Major Facilitator Superfamily Probable high-affinity nitrate transporter 2.4 (OsNRT2.4),Os01g0547600 protein A2ZU80,A0A0P0V3U2 NRT24_ORYSJ,A0A0P0V3U2_ORYSJ NRT2.4 Os01g0547600 LOC_Os01g36720 OsJ_02167 OSJNBa0026J14,Os01g0547600 OSNPB_010547600 FUNCTION: Involved in nitrate transport. {ECO:0000250}. ENOG411DU5G Q93WC8,Q9CAU9,F4K725 Q93WC8_ARATH,Q9CAU9_ARATH,F4K725_ARATH Protein prenylyltransferase superfamily protein (Uncharacterized protein At3g04830),Contains similarity to O-linked GlcNAc transferases (Expressed protein) (Protein prenylyltransferase superfamily protein) (Uncharacterized protein T9J14.22),Protein prenylyltransferase superfamily protein 33287,33745,34965 Protein prenylyltransferase superfamily protein (Uncharacterized protein At3g04830),Contains similarity to O-linked GlcNAc transferases (Expressed protein) (Protein prenylyltransferase superfamily protein) (Uncharacterized protein T9J14.22),Protein prenylyltransferase superfamily protein transferase activity [GO:0016740],endoplasmic reticulum [GO:0005783]; ER membrane protein complex [GO:0072546]; Golgi apparatus [GO:0005794]; transferase activity [GO:0016740]; protein folding in endoplasmic reticulum [GO:0034975],ER membrane protein complex [GO:0072546]; transferase activity [GO:0016740]; protein folding in endoplasmic reticulum [GO:0034975] locus:2114855;,locus:2147555; AT3G04830,AT5G28220 Tetratricopeptide repeat protein Os02g0127000 protein,Os02g0127000 protein (Fragment) A0A0P0VEB0,A0A0P0VEC6 A0A0P0VEB0_ORYSJ,A0A0P0VEC6_ORYSJ Os02g0127000 OSNPB_020127000 ENOG411DU5D Q9LFX8 Q9LFX8_ARATH Glycine-rich protein (T7N9.15) (Uncharacterized protein At1g27090) 46018 Glycine-rich protein (T7N9.15) (Uncharacterized protein At1g27090) cytosol [GO:0005829]; mRNA binding [GO:0003729] locus:2205729; AT1G27090 NA Expressed protein (Os03g0688200 protein) (Putative glycine rich protein),Os09g0114632 protein Q6AVI7,A0A0P0XJG0 Q6AVI7_ORYSJ,A0A0P0XJG0_ORYSJ OSJNBa0022C08.20 OSJNBb0024N19.2 LOC_Os03g48260 Os03g0688200 OSNPB_030688200,Os09g0114632 OSNPB_090114632 ENOG411DU5E BGLU9,BGLU10,BGLU11 Q9STP4,Q93ZI4,B3H5Q1,A0A1P8B7T6,A0A1P8B4J5 BGL09_ARATH,BGL10_ARATH,BGL11_ARATH,A0A1P8B7T6_ARATH,A0A1P8B4J5_ARATH Beta-glucosidase 9 (AtBGLU9) (EC 3.2.1.21),Beta-glucosidase 10 (AtBGLU10) (EC 3.2.1.21),Beta-glucosidase 11 (AtBGLU11) (EC 3.2.1.21),Beta glucosidase 9,Beta glucosidase 10 ARA:AT4G27820-MONOMER;,ARA:AT4G27830-MONOMER;MetaCyc:MONOMER-18515;,ARA:AT1G02850-MONOMER; R-ATH-189085; 3.2.1.21 56892,57078,58062,47350,47250 Beta-glucosidase 9 (AtBGLU9) (EC 3.2.1.21),Beta-glucosidase 10 (AtBGLU10) (EC 3.2.1.21),Beta-glucosidase 11 (AtBGLU11) (EC 3.2.1.21),Beta glucosidase 9,Beta glucosidase 10 peroxisome [GO:0005777]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],vacuole [GO:0005773]; beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; anthocyanin-containing compound metabolic process [GO:0046283]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],beta-glucosidase activity [GO:0008422]; scopolin beta-glucosidase activity [GO:0102483]; carbohydrate metabolic process [GO:0005975]; glycosyl compound metabolic process [GO:1901657],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2137355;,locus:2137360;,locus:2024685; AT4G27820,AT4G27830,AT1G02850 beta-glucosidase Beta-glucosidase 2 (Os1bglu2) (EC 3.2.1.21),Beta-glucosidase 22 (Os5bglu22) (EC 3.2.1.21),Putative beta-glucosidase 23 (Os5bglu23) (EC 3.2.1.21),Beta-glucosidase 3 (Os1bglu3) (EC 3.2.1.21),Beta-glucosidase 5 (Os1bglu5) (EC 3.2.1.21),Os05g0366800 protein (Fragment),Os01g0813800 protein (Fragment),Os01g0813800 protein B7F8N7,Q60DX8,Q6L597,Q8RZL1,Q5JK35,A0A0P0WLC5,A0A0N7KDY3,A0A0P0V9R8 BGL02_ORYSJ,BGL22_ORYSJ,BGL23_ORYSJ,BGL03_ORYSJ,BGL05_ORYSJ,A0A0P0WLC5_ORYSJ,A0A0N7KDY3_ORYSJ,A0A0P0V9R8_ORYSJ BGLU2 Os01g0813700 LOC_Os01g59819,BGLU22 Os05g0366600 LOC_Os05g30350 OSJNBa0090H02.10,BGLU23 Os05g0366800 LOC_Os05g30390 OJ1393_A07.1 OSJNBa0090H02.13,BGLU3 Os01g0813800 LOC_Os01g59840 OSJNBa0085D07.14-1 P0432B10.18,BGLU5 Os01g0930800 LOC_Os01g70520 OSJNBa0052O12.35 P0506E04.13,Os05g0366800 OSNPB_050366800,Os01g0813800 OSNPB_010813800 ENOG411DU5Z SMC1 Q6Q1P4 SMC1_ARATH Structural maintenance of chromosomes protein 1 (SMC protein 1) (SMC-1) (Chromosome segregation protein SMC-1) (Cohesin complex subunit SMC-1) (Protein TITAN8) DISRUPTION PHENOTYPE: Altered chromosome dynamics and cell division during seed development, leading to aberrant mitoses and giant polyploid nuclei in endosperm as well as arrested embryos with a few small cells. {ECO:0000269|PubMed:11788751, ECO:0000269|PubMed:11846874, ECO:0000269|PubMed:19533160}. Embryo defective; Preglobular; Enlarged endosperm nuclei-D. Meinke-2002 FUNCTION: Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement (By similarity). Essential protein plant viability. Required for chromosome segregation (e.g. sister chromatid alignment) and cell division during embryogenesis. {ECO:0000250, ECO:0000269|PubMed:11788751, ECO:0000269|PubMed:11846874, ECO:0000269|PubMed:19533160}. R-ATH-2468052;R-ATH-2470946;R-ATH-2500257; Oocyte meiosis (04114),Meiosis - yeast (04113),Cell cycle - yeast (04111),Cell cycle (04110) 140912 Structural maintenance of chromosomes protein 1 (SMC protein 1) (SMC-1) (Chromosome segregation protein SMC-1) (Cohesin complex subunit SMC-1) (Protein TITAN8) chloroplast [GO:0009507]; cohesin complex [GO:0008278]; nucleus [GO:0005634]; ATP binding [GO:0005524]; chromatin binding [GO:0003682]; protein heterodimerization activity [GO:0046982]; transporter activity [GO:0005215]; cell division [GO:0051301]; chromosome segregation [GO:0007059]; DNA repair [GO:0006281]; meiotic cell cycle [GO:0051321]; mitotic sister chromatid cohesion [GO:0007064]; sister chromatid cohesion [GO:0007062] TISSUE SPECIFICITY: Mostly expressed in flower buds and stems, and, to a lower extent, in leaves and roots. {ECO:0000269|PubMed:15972315}. locus:2102420; AT3G54670 structural maintenance of chromosomes protein Os12g0641500 protein (RecF/RecN/SMC N terminal domain containing protein, expressed),Os12g0641500 protein,Os07g0696100 protein (Fragment) Q2QLI0,A0A0N7KUG0,A0A0P0XAP3 Q2QLI0_ORYSJ,A0A0N7KUG0_ORYSJ,A0A0P0XAP3_ORYSJ Os12g0641500 LOC_Os12g44390 OSNPB_120641500,Os12g0641500 OSNPB_120641500,Os07g0696100 OSNPB_070696100 ENOG411DU5X CROLIN 1 Q9XIF7,Q8GXC9,Q0WQH3,Q9LQ43,A0A1P8AQI0,F4J0C4 Q9XIF7_ARATH,Q8GXC9_ARATH,Q0WQH3_ARATH,Q9LQ43_ARATH,A0A1P8AQI0_ARATH,F4J0C4_ARATH Actin cross-linking protein (DUF569) (At1g59710/T30E16_31) (F23H11.2 protein),Actin cross-linking protein, putative (DUF569) (Uncharacterized protein At3g28630) (Uncharacterized protein At3g28630/MZN14_9),Actin cross-linking protein (At1g27100) (Uncharacterized protein At1g27100),Actin cross-linking protein (DUF569) (T30E16.31),Actin cross-linking protein (DUF569),Actin cross-linking protein, putative (DUF569) 33579,37973,57684,36359,23901,36380 Actin cross-linking protein (DUF569) (At1g59710/T30E16_31) (F23H11.2 protein),Actin cross-linking protein, putative (DUF569) (Uncharacterized protein At3g28630) (Uncharacterized protein At3g28630/MZN14_9),Actin cross-linking protein (At1g27100) (Uncharacterized protein At1g27100),Actin cross-linking protein (DUF569) (T30E16.31),Actin cross-linking protein (DUF569),Actin cross-linking protein, putative (DUF569) actin filament binding [GO:0051015],vacuole [GO:0005773] locus:2025876;,locus:2095547;,locus:2205744; AT1G59710,AT3G28630,AT1G27100 Protein of unknown function (DUF569) NA NA NA NA NA NA NA ENOG411DU5Y EMS1 Q9LYN8 EMS1_ARATH Leucine-rich repeat receptor protein kinase EMS1 (EC 2.7.11.1) (Protein EXCESS MICROSPOROCYTES 1) (Protein EXTRA SPOROGENOUS CELLS) Embryo defective; Cotyledon-H. Dickinson-2003 FUNCTION: Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. MISCELLANEOUS: Some ecotypic variation may occur: in cv. Landsberg erecta, meiocytes of a null mutant fail to undergo cytokinesis while in cv. C24, cytokinesis clearly takes place, with the mutant meiocytes degenerating shortly after the tetrad stage.; MISCELLANEOUS: In cv. C24, the gene is expressed in the young ovular primordia, but the protein is not present in these organs. 2.7.11.1 129800 Leucine-rich repeat receptor protein kinase EMS1 (EC 2.7.11.1) (Protein EXCESS MICROSPOROCYTES 1) (Protein EXTRA SPOROGENOUS CELLS) integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein kinase activity [GO:0019199]; anther wall tapetum cell fate specification [GO:0010234]; microsporogenesis [GO:0009556] DEVELOPMENTAL STAGE: Expressed during the differentiation of microsporocytes and tapetal cells. Also expressed in the meiocytes and young pollen grains until pollen mitosis II. {ECO:0000269|PubMed:12154130, ECO:0000269|PubMed:12401166}. TISSUE SPECIFICITY: Present in young buds, open flowers and siliques but absent from mature leaves and roots. Strongly expressed in the young organ primordia, and as the anthers and ovules developed, became focused in the microsporangia and in the distal and chalazal regions of the ovule. In cv. Landsberg erecta, only expressed in the anthers of young floral buds. locus:2182870; AT5G07280 leucine-rich repeat receptor protein kinase Leucine Rich Repeat family protein (Os10g0469000 protein),Os10g0469000 protein Q7XDK0,A0A0P0XV35 Q7XDK0_ORYSJ,A0A0P0XV35_ORYSJ Os10g0469000 LOC_Os10g33080 OsJ_31845 OSNPB_100469000,Os10g0469000 OSNPB_100469000 ENOG411DU5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os04g0450400 protein (Fragment) A0A0P0WAW5 A0A0P0WAW5_ORYSJ Os04g0450400 OSNPB_040450400 ENOG411DU5P Q8RWE3,A0A1P8B227 Q8RWE3_ARATH,A0A1P8B227_ARATH GPI-anchored protein (Uncharacterized protein At2g30700),GPI-anchored protein 51562,50089 GPI-anchored protein (Uncharacterized protein At2g30700),GPI-anchored protein integral component of membrane [GO:0016021] locus:2054472; AT2G30700 NA Expressed protein (Os10g0534100 protein),Expressed protein (Os10g0534100 protein) (cDNA clone:J013052N15, full insert sequence),Os10g0534100 protein (Fragment) Q336X8,Q336X7,A0A0P0XXJ9,A0A0P0XWL8 Q336X8_ORYSJ,Q336X7_ORYSJ,A0A0P0XXJ9_ORYSJ,A0A0P0XWL8_ORYSJ Os10g0534100 LOC_Os10g38980 Os10g0534100 OSNPB_100534100,Os10g0534100 LOC_Os10g38980 OSNPB_100534100,Os10g0534100 OSNPB_100534100 ENOG411DU5Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) Os05g0564300 protein (cDNA clone:J013041K19, full insert sequence) Q6AUF9 Q6AUF9_ORYSJ Os05g0564300 OSJNBb0053D02.12 OSNPB_050564300 ENOG411DU5V TBL34 O80919,A0A1P8B059 TBL34_ARATH,A0A1P8B059_ARATH Protein trichome birefringence-like 34,TRICHOME BIREFRINGENCE-LIKE 34 FUNCTION: May be involved in the specific O-acetylation of cell wall polymers. {ECO:0000250, ECO:0000269|PubMed:20657172}. MISCELLANEOUS: Contains 2 motifs that are conserved in esterases, but it is unlikely that this protein belongs to the catalytically active pectin esterases. {ECO:0000305|PubMed:20657172}. 47657,38353 Protein trichome birefringence-like 34,TRICHOME BIREFRINGENCE-LIKE 34 Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; xylan O-acetyltransferase activity [GO:1990538]; xylan biosynthetic process [GO:0045492] locus:2057145; AT2G38320 expressed protein Expressed protein (Os03g0817500 protein) (cDNA clone:002-183-B10, full insert sequence) Q84TV3 Q84TV3_ORYSJ LOC_Os03g60300 Os03g0817500 OSJNBa0094J08.14 OSNPB_030817500 ENOG411DU5W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoribosyl transferase domain Os03g0100040 protein A3AD51 A3AD51_ORYSJ Os03g0100040 OsJ_09044 OSNPB_030100040 ENOG411DU5T P0C8Q3 PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890 78984 Pentatricopeptide repeat-containing protein At4g19890 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:6530298213; AT4G19890 Pentatricopeptide repeat-containing protein Os11g0607100 protein (Pentatricopeptide, putative, expressed) Q2R1F4 Q2R1F4_ORYSJ LOC_Os11g39360 Os11g0607100 OSNPB_110607100 ENOG411DU5U RPL15A,RPL15B O23515,Q8VYF1 RL151_ARATH,RL152_ARATH 60S ribosomal protein L15-1,60S ribosomal protein L15-2 R-ATH-156827;R-ATH-1799339;R-ATH-72689;R-ATH-72706;R-ATH-975956;R-ATH-975957; 24239 60S ribosomal protein L15-1,60S ribosomal protein L15-2 cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasma membrane [GO:0005886]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256]; ribosome assembly [GO:0042255],cytosolic large ribosomal subunit [GO:0022625]; membrane [GO:0016020]; nucleolus [GO:0005730]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; mature ribosome assembly [GO:0042256] locus:2129081;,locus:2130923; AT4G16720,AT4G17390 Ribosomal protein L15 Ribosomal protein L15,Ribosomal protein L15 (Fragment) Q8H8S1,A0A0P0W0L2,A0A0P0WK98 Q8H8S1_ORYSJ,A0A0P0W0L2_ORYSJ,A0A0P0WK98_ORYSJ OSJNBa0087M10.1 LOC_Os03g40180 Os03g0598800 Os05g0274700 OJ1523_A02.2 OsJ_11650 OSNPB_030598800,Os03g0598800 OSNPB_030598800,Os05g0274900 OSNPB_050274900 ENOG411E34N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF568) Auxin-induced protein-like (Os08g0335600 protein) (cDNA clone:001-206-G07, full insert sequence) Q6YUI4 Q6YUI4_ORYSJ Os08g0335600 OsJ_26939 OSJNBb0076O03.33 OSNPB_080335600 P0689D06.1 ENOG411EIYX GLR3.4,GLR3.5 Q8GXJ4,Q9SW97,F4ITQ0,A0A1P8AP10,A0A1P8AYW8,A0A1P8AYR0,F4ITQ2,A0A1P8AP36 GLR34_ARATH,GLR35_ARATH,F4ITQ0_ARATH,A0A1P8AP10_ARATH,A0A1P8AYW8_ARATH,A0A1P8AYR0_ARATH,F4ITQ2_ARATH,A0A1P8AP36_ARATH Glutamate receptor 3.4 (AtGLR4) (Ligand-gated ion channel 3.4),Glutamate receptor 3.5 (Ionotropic glutamate receptor GLR6) (Ligand-gated ion channel 3.5),Glutamate receptor 3.5,Glutamate receptor,Glutamate receptor 3.4 DISRUPTION PHENOTYPE: Impaired glutamate-triggered (and Ala, Asn, Cys, Gly, Ser-triggered) membrane depolarization and calcium rise. Slight reduction of photosynthetic yield of Photosystem II. {ECO:0000269|PubMed:18162597, ECO:0000269|PubMed:21110940}. FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel, at least in hypocotyls. Can be triggered by Ala, Asn, Gly, Ser and, to a lower extent, Cys and Glu. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Plays an important role in the calcium-based fast transmission of environmental stress. {ECO:0000269|PubMed:15864638, ECO:0000269|PubMed:18162597, ECO:0000269|PubMed:21110940}.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.,FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 107207,106811,77760,92337,74428,72913,95893,75336 Glutamate receptor 3.4 (AtGLR4) (Ligand-gated ion channel 3.4),Glutamate receptor 3.5 (Ionotropic glutamate receptor GLR6) (Ligand-gated ion channel 3.5),Glutamate receptor 3.5,Glutamate receptor,Glutamate receptor 3.4 chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plastid [GO:0009536]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; ligand-gated ion channel activity [GO:0015276]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to acetate [GO:0071311]; cellular response to amino acid stimulus [GO:0071230]; cellular response to cold [GO:0070417]; cellular response to mechanical stimulus [GO:0071260]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230],chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; extracellular-glutamate-gated ion channel activity [GO:0005234]; ion channel activity [GO:0005216]; ionotropic glutamate receptor activity [GO:0004970]; mitochondrion morphogenesis [GO:0070584]; seed germination [GO:0009845],integral component of membrane [GO:0016021]; ionotropic glutamate receptor activity [GO:0004970],integral component of membrane [GO:0016021]; extracellular-glutamate-gated ion channel activity [GO:0005234]; ionotropic glutamate receptor activity [GO:0004970],integral component of membrane [GO:0016021]; G-protein coupled receptor activity [GO:0004930]; ionotropic glutamate receptor activity [GO:0004970] TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, roots (e.g. root hairs, epidermis and cortex cells), stems, leaves (e.g. vascular bundles and hydathodes), and siliques. {ECO:0000269|PubMed:12082126, ECO:0000269|PubMed:15864638}.,TISSUE SPECIFICITY: Expressed predominantly in roots. Also detected in shoots. {ECO:0000269|PubMed:12082126}. locus:2207165;,locus:2062601; AT1G05200,AT2G32390 Glutamate-gated receptor that probably acts as non- selective cation channel (By similarity) NA NA NA NA NA NA NA ENOG411EBA4 REM1 Q84J39,A0A1P8B3F5 REM1_ARATH,A0A1P8B3F5_ARATH B3 domain-containing protein REM1 (Protein REPRODUCTIVE MERISTEM 1) (AtREM1),Transcriptional factor B3 family protein FUNCTION: May play a role in flower development. 58388,58912 B3 domain-containing protein REM1 (Protein REPRODUCTIVE MERISTEM 1) (AtREM1),Transcriptional factor B3 family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; flower development [GO:0009908]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Not expressed in stage 1 flower. In stage 2 and 3 flowers, expressed in the central area of the floral dome, but not in the sepal anlagen. In stage 5 flower, restricted to the carpel anlagen. Stage 6, 7 and 8 flowers, expressed in the medial ridge. In stage 9 flower, expressed in the septum, style, and stigma. Shortly before anthesis expressed in the stigma and septum. {ECO:0000269|PubMed:11842146}. TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), in the inflorescence apex and flowers. {ECO:0000269|PubMed:11842146}. locus:2124834; AT4G31610 B3 NA NA NA NA NA NA NA ENOG411EBAC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EBAM MES18 Q9LVL9 MES18_ARATH Methylesterase 18 (AtMES18) (EC 3.1.1.-) FUNCTION: Methylesterase shown to have methyl indole-3-acetic acid (MeIAA) esterase activity in vitro. {ECO:0000269|PubMed:18467465}. ARA:AT5G58310-MONOMER; 3.1.1.- 29092 Methylesterase 18 (AtMES18) (EC 3.1.1.-) hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030] locus:2161223; AT5G58310 alpha/beta hydrolase fold NA NA NA NA NA NA NA ENOG411EBAQ ARFD1A,ARFD1B A0A1P8AVU2,A0A1P8ARH7,F4HXI4,F4HXI5 A0A1P8AVU2_ARATH,A0A1P8ARH7_ARATH,F4HXI4_ARATH,F4HXI5_ARATH ADP-ribosylation factor D1A,ADP-ribosylation factor D1B 13605,18270,21253,21344 ADP-ribosylation factor D1A,ADP-ribosylation factor D1B GTP binding [GO:0005525],intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264] locus:2204848;,locus:2196075; AT1G02430,AT1G02440 ADP-ribosylation factor NA NA NA NA NA NA NA ENOG411E0IY Q9FJK0 Q9FJK0_ARATH Aldo/keto reductase family protein (Aldose reductase-like protein) (NAD(P)-linked oxidoreductase superfamily protein) ARA:AT5G62420-MONOMER; R-ATH-156590;R-ATH-193144;R-ATH-193368;R-ATH-193775;R-ATH-193807;R-ATH-196108;R-ATH-2162123;R-ATH-5365859;R-ATH-5652227;R-ATH-5661270; 35571 Aldo/keto reductase family protein (Aldose reductase-like protein) (NAD(P)-linked oxidoreductase superfamily protein) oxidoreductase activity [GO:0016491] locus:2154164; AT5G62420 reductase family Probable NAD(P)H-dependent oxidoreductase 2 (EC 1.-.-.-),Os10g0113100 protein (Fragment) Q7G765,A0A0P0XR10 NADO2_ORYSJ,A0A0P0XR10_ORYSJ Os10g0113100 LOC_Os10g02380 LOC_Os10g02390 OJ1014H12.12 OSJNBb0012A20.19,Os10g0113100 OSNPB_100113100 FUNCTION: May play a role in auxin-induced cell growth by generating hydroxyl radicals, which tends to increase cell wall loosening. {ECO:0000250}. ENOG411E7QE F22O6_140 Q9SVC9 Q9SVC9_ARATH At3g52480 (Transmembrane protein) (Uncharacterized protein F22O6_140) 23112 At3g52480 (Transmembrane protein) (Uncharacterized protein F22O6_140) integral component of membrane [GO:0016021] locus:2079889; AT3G52480 NA NA NA NA NA NA NA NA ENOG411DRFA TGD4,PDE320 Q9M903,F4JD78 TGD4_ARATH,F4JD78_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic (Protein PIGMENT DEFECTIVE 320),Pigment defective 320 DISRUPTION PHENOTYPE: Stunted, pale yellow and infertile plants, which accumulate oligogalactoglycerolipids and phosphatidates. {ECO:0000269|PubMed:18689504, ECO:0000269|PubMed:20410050, ECO:0000269|PubMed:22269056}. The tgd4-1 plant is slightly pale green but otherwise indistinguishable from the wild type.,Plants carrying the tgd4-2 T-DNA insertion allele were stunted pale yellow in color and infertile.,The tgd4-3 plant is slightly pale green but otherwise indistinguishable from the wild type. Seedling lethal (inferred from pigment defect)-D. Meinke-2003 FUNCTION: Involved in lipid transfer from the endoplasmic reticulum (ER) to plastids. Specifically binds phosphatidic acid (PtdOH). {ECO:0000269|PubMed:18689504, ECO:0000269|PubMed:20410050, ECO:0000269|PubMed:22269056, ECO:0000269|PubMed:23297418}. 52822,37837 Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic (Protein PIGMENT DEFECTIVE 320),Pigment defective 320 chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast outer membrane [GO:0009707]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; phosphatidic acid binding [GO:0070300]; protein homodimerization activity [GO:0042803]; acylglycerol transport [GO:0034196]; ER to chloroplast lipid transport [GO:1990052] locus:2077562; AT3G06960 NA Os01g0251000 protein (cDNA clone:J023004L24, full insert sequence) Q0JP16 Q0JP16_ORYSJ Os01g0251000 Os01g0251000 OSNPB_010251000 ENOG411E7QY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Seems to be required for the assembly of the photosystem I complex (By similarity) NA NA NA NA NA NA NA ENOG411E7QV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0189300 protein A0A0N7KIM2 A0A0N7KIM2_ORYSJ Os04g0189300 OSNPB_040189300 ENOG411E7QT T1N6.13 Q9LQ84,Q6DYB5 Q9LQ84_ARATH,Q6DYB5_ARATH Adenylosuccinate synthetase (T1N6.13 protein) (Uncharacterized protein At1g01725),UvrABC system protein A 6881,7723 Adenylosuccinate synthetase (T1N6.13 protein) (Uncharacterized protein At1g01725),UvrABC system protein A mitochondrion [GO:0005739] locus:505006092;,locus:2127093; AT1G01725,AT4G00530 NA NA NA NA NA NA NA NA ENOG411E7Q7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0827900 protein Q8SAX9 Q8SAX9_ORYSJ Os03g0827900 LOC_Os03g61240 OSJNBa0010E04.22 OSNPB_030827900 ENOG411DRFV SR34B,SR30,SR34,SR34b F4JHI7,Q9XFR5,O22315,A0A1P8B3V3,A0A1P8B3U4,A0A1P8AN11 SR34B_ARATH,SR30_ARATH,SR34_ARATH,A0A1P8B3V3_ARATH,A0A1P8B3U4_ARATH,A0A1P8AN11_ARATH Serine/arginine-rich splicing factor SR34B (At-SR34B) (At-SRp34B) (AtSR34B) (SER/ARG-rich protein 34B),Serine/arginine-rich splicing factor SR30 (At-SR30) (At-SRp30) (AtSR30) (SF2/ASF-like splicing modulator Srp30) (Serine-arginine rich RNA binding protein 30),Serine/arginine-rich-splicing factor SR34 (At-SR34) (At-SRp34) (AtSR34) (Pre-mRNA-splicing factor SF2) (SR1 protein),RNA-binding (RRM/RBD/RNP motifs) family protein,SERINE-ARGININE PROTEIN 30 FUNCTION: Probably involved in intron recognition and spliceosome assembly.,FUNCTION: Regulatory splicing factor that modulates alternative splicing and gene expression in specific cell types. Autoregulates its own expression. Probably involved in intron recognition and spliceosome assembly. {ECO:0000269|PubMed:10215626}.,FUNCTION: General splicing factor. Can promote splice site selection in vitro presumably by antagonizing the effects of the A1 heterogeneous nuclear ribonucleoprotein. May have an essential function during early plant development. {ECO:0000269|PubMed:10215626}. MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses. {ECO:0000305|PubMed:17319848}.,MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of stress treatment (PubMed:10215626, PubMed:17556373, PubMed:17319848) or light regimes (PubMed:24763593). {ECO:0000305|PubMed:10215626, ECO:0000305|PubMed:17319848, ECO:0000305|PubMed:17556373, ECO:0000305|PubMed:24763593}.; MISCELLANEOUS: A mobile signal generated in the leaves triggers root alternative splicing responses to light. {ECO:0000305|PubMed:24763593}.,MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated in a tissue-specific manner and by development, and changes in response to various types of abiotic stresses and hormones (PubMed:10215626, PubMed:17319848). {ECO:0000305|PubMed:10215626, ECO:0000305|PubMed:17319848}. R-ATH-72163;R-ATH-72165; 31450,30386,33729,30640,32961,28353 Serine/arginine-rich splicing factor SR34B (At-SR34B) (At-SRp34B) (AtSR34B) (SER/ARG-rich protein 34B),Serine/arginine-rich splicing factor SR30 (At-SR30) (At-SRp30) (AtSR30) (SF2/ASF-like splicing modulator Srp30) (Serine-arginine rich RNA binding protein 30),Serine/arginine-rich-splicing factor SR34 (At-SR34) (At-SRp34) (AtSR34) (Pre-mRNA-splicing factor SF2) (SR1 protein),RNA-binding (RRM/RBD/RNP motifs) family protein,SERINE-ARGININE PROTEIN 30 nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],cytoplasm [GO:0005737]; interchromatin granule [GO:0035061]; nuclear speck [GO:0016607]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; mRNA splice site selection [GO:0006376]; regulation of mRNA splicing, via spliceosome [GO:0048024],interchromatin granule [GO:0035061]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380],RNA binding [GO:0003723] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10215626, ECO:0000269|PubMed:15034145}.,TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10215626, ECO:0000269|PubMed:12176998, ECO:0000269|PubMed:15034145}. locus:2133249;,locus:2195346;,locus:2024770; AT4G02430,AT1G09140,AT1G02840 splicing factor Os03g0344100 protein,Os07g0673500 protein,Os03g0344100 protein (Pre-mRNA splicing factor SF2, putative, expressed) (cDNA clone:001-041-H07, full insert sequence),Os01g0316600 protein (Fragment),Os05g0364600 protein (Fragment),Os01g0316550 protein Q0DRZ2,Q0D3Q1,Q10LL5,A0A0P0XA87,A0A0P0V1N4,A0A0P0WLH4,A0A0N7KCU8 Q0DRZ2_ORYSJ,Q0D3Q1_ORYSJ,Q10LL5_ORYSJ,A0A0P0XA87_ORYSJ,A0A0P0V1N4_ORYSJ,A0A0P0WLH4_ORYSJ,A0A0N7KCU8_ORYSJ Os03g0344100 OSNPB_030344100,Os07g0673500 Os07g0673500 OSNPB_070673500,Os03g0344100 LOC_Os03g22380 OsJ_10806 OSNPB_030344100,Os07g0673500 OSNPB_070673500,Os01g0316600 OSNPB_010316600,Os05g0364600 OSNPB_050364600,Os01g0316550 OSNPB_010316550 ENOG411DRFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Transferase family Agmatine hydroxycinnamoyltransferase 1 (OsAHT1) (EC 2.3.1.-) (Agmatine hydroxycinnamoyl transferase),Os04g0664500 protein Q7XPK7,A0A0P0WG42 AHT1_ORYSJ,A0A0P0WG42_ORYSJ AHT1 Os04g0664600 LOC_Os04g56910 OsJ_16526 OSJNBa0087O24.2,Os04g0664500 OSNPB_040664500 FUNCTION: Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to agmatine, to produce coumaroyl agmatine. Can use feruloyl-CoA, caffeoyl-CoA and sinapoyl-CoA as acyl donors (PubMed:24908251, PubMed:27015846, PubMed:27354554). Seems to be able to transfer the acyl group from p-coumaroyl-CoA and feruloyl-CoA to the acyl acceptors putrescine and spermidine (PubMed:24908251). {ECO:0000269|PubMed:24908251, ECO:0000269|PubMed:27015846, ECO:0000269|PubMed:27354554}. ENOG411E73Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA OSJNBa0011F23.3 protein (Os04g0657900 protein) Q8S3Q4 Q8S3Q4_ORYSJ 24K23.2 Os04g0657900 OsJ_16470 OSJNBa0011F23.3 OSNPB_040657900 ENOG411E15M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein Mitochondrial carrier protein, expressed (Os10g0397800 protein) (Putative Tricarboxylate transport protein, mitochondrial) Q8RU49 Q8RU49_ORYSJ OSJNBb0058B20.12 LOC_Os10g25830 Os10g0397800 OSNPB_100397800 ENOG411DS3U KCS12,KCS3 Q9SIB2,Q9LQP8,A0A1P8AST0 KCS12_ARATH,KCS3_ARATH,A0A1P8AST0_ARATH 3-ketoacyl-CoA synthase 12 (KCS-12) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 12) (VLCFA condensing enzyme 12),3-ketoacyl-CoA synthase 3 (KCS-3) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3),3-ketoacyl-CoA synthase (EC 2.3.1.-) PATHWAY: Lipid metabolism; fatty acid biosynthesis.,PATHWAY: Lipid metabolism; fatty acid biosynthesis. {ECO:0000256|PIRNR:PIRNR036417}. ARA:AT2G28630-MONOMER;,ARA:AT1G07720-MONOMER; 2.3.1.199,2.3.1.- 53974,54335,59171 3-ketoacyl-CoA synthase 12 (KCS-12) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 12) (VLCFA condensing enzyme 12),3-ketoacyl-CoA synthase 3 (KCS-3) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3),3-ketoacyl-CoA synthase (EC 2.3.1.-) endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633],endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; 3-oxo-arachidoyl-CoA synthase activity [GO:0102336]; 3-oxo-cerotoyl-CoA synthase activity [GO:0102337]; 3-oxo-lignoceronyl-CoA synthase activity [GO:0102338]; fatty acid biosynthetic process [GO:0006633]; response to cold [GO:0009409]; response to light stimulus [GO:0009416],integral component of membrane [GO:0016021]; transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in siliques, flowers and leaves. {ECO:0000269|PubMed:18465198}.,TISSUE SPECIFICITY: Expressed in siliques, leaves, stems and seedlings. {ECO:0000269|PubMed:18465198}. locus:2065499;,locus:2026600; AT2G28630,AT1G07720 3-ketoacyl-coa synthase 3-ketoacyl-CoA synthase (EC 2.3.1.-) Q9FW59,Q75M74,Q10KI1,Q6K3E6 Q9FW59_ORYSJ,Q75M74_ORYSJ,Q10KI1_ORYSJ,Q6K3E6_ORYSJ OSJNBb0094K03.7 LOC_Os10g33370 Os10g0472900 OSJNBa0001K12.18 OSNPB_100472900,Os03g0382100 LOC_Os03g26530 Os03g0382100 OSJNBa0011H24.11 OSNPB_030382100,LOC_Os03g26620 Os03g0383600 OSNPB_030383600,Os02g0813600 Os02g0813600 OJ1293_E04.6 OsJ_08843 OSJNBa0053L11.28 OSNPB_020813600 ENOG411DS3R GOS11 Q9LMP7 GOS11_ARATH Golgi SNAP receptor complex member 1-1 (Golgi SNARE 11 protein) (AtGOS11) FUNCTION: Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor (By similarity). {ECO:0000250}. R-ATH-6807878;R-ATH-6811438; 25214 Golgi SNAP receptor complex member 1-1 (Golgi SNARE 11 protein) (AtGOS11) cis-Golgi network [GO:0005801]; Golgi apparatus [GO:0005794]; Golgi medial cisterna [GO:0005797]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; ER to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031]; regulation of vesicle targeting, to, from or within Golgi [GO:0048209]; vesicle fusion [GO:0006906] locus:2036194; AT1G15880 Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (By similarity) Golgi SNAP receptor complex member 1 Q6Z9I2,Q6EQ07 Q6Z9I2_ORYSJ,Q6EQ07_ORYSJ Os08g0440000 OsJ_27466 OSNPB_080440000 P0524F03.27,Os09g0416700 Os09g0416700 OsJ_29371 OSNPB_090416700 P0014G10.20 P0707C02.40 FUNCTION: Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. {ECO:0000256|PIRNR:PIRNR027109}. ENOG411DS3J PBD1,PBD2 O23714,O24633,F4JIF9 PSB2A_ARATH,PSB2B_ARATH,F4JIF9_ARATH Proteasome subunit beta type-2-A (EC 3.4.25.1) (20S proteasome beta subunit D-1) (Proteasome component GB) (Proteasome subunit beta type-4),Proteasome subunit beta type-2-B (EC 3.4.25.1) (20S proteasome beta subunit D-2) (Proteasome component GA) (Proteasome subunit beta type-4),Proteasome subunit beta type (EC 3.4.25.1) Defective pollen development. FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.,FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. {ECO:0000256|RuleBase:RU004203}. R-ATH-1236978;R-ATH-174184;R-ATH-349425;R-ATH-382556;R-ATH-4641258;R-ATH-5632684;R-ATH-5668541;R-ATH-5689603;R-ATH-5689880;R-ATH-68949;R-ATH-69017;R-ATH-983168; 3.4.25.1 22541,21984,23827 Proteasome subunit beta type-2-A (EC 3.4.25.1) (20S proteasome beta subunit D-1) (Proteasome component GB) (Proteasome subunit beta type-4),Proteasome subunit beta type-2-B (EC 3.4.25.1) (20S proteasome beta subunit D-2) (Proteasome component GA) (Proteasome subunit beta type-4),Proteasome subunit beta type (EC 3.4.25.1) apoplast [GO:0048046]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; proteasome complex [GO:0000502]; proteasome core complex, beta-subunit complex [GO:0019774]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603],cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex, beta-subunit complex [GO:0019774]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603],nucleus [GO:0005634]; proteasome complex [GO:0000502]; proteasome core complex [GO:0005839]; vacuole [GO:0005773]; threonine-type endopeptidase activity [GO:0004298]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to cadmium ion [GO:0046686] TISSUE SPECIFICITY: Ubiquitous low levels, higher expression in siliques and flowers. {ECO:0000269|PubMed:9611183}. locus:2077051;,locus:2130240; AT3G22630,AT4G14800 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg Phe Tyr Leu and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity Proteasome subunit beta type-2 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit beta-4) Q9LST6 PSB2_ORYSJ PBD1 Os03g0695600 LOC_Os03g48930 OsJ_12208 OSJNBb0021P10.3 FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity). {ECO:0000250}. ENOG411DS3K HST Q9FI78 HST_ARATH Shikimate O-hydroxycinnamoyltransferase (EC 2.3.1.133) (Hydroxycinnamoyl transferase) (Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase) FUNCTION: Acyltransferase involved in the biosynthesis of lignin (PubMed:15161961, PubMed:26858288). Accepts caffeoyl-CoA and p-coumaroyl-CoA as substrates and transfers the acyl group on both shikimate and quinate acceptors (PubMed:15161961). {ECO:0000269|PubMed:15161961, ECO:0000269|PubMed:26858288}. ARA:AT5G48930-MONOMER; Phenylpropanoid biosynthesis (00940),Flavonoid biosynthesis (00941),Stilbenoid, diarylheptanoid and gingerol biosynthesis (00945),Biosynthesis of secondary metabolites (01110) 2.3.1.133 47975 Shikimate O-hydroxycinnamoyltransferase (EC 2.3.1.133) (Hydroxycinnamoyl transferase) (Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase) cytoplasm [GO:0005737]; cytosol [GO:0005829]; membrane [GO:0016020]; quinate O-hydroxycinnamoyltransferase activity [GO:0047205]; shikimate O-hydroxycinnamoyltransferase activity [GO:0047172]; auxin homeostasis [GO:0010252]; cell wall organization [GO:0071555]; lignin biosynthetic process [GO:0009809]; positive regulation of flavonoid biosynthetic process [GO:0009963] locus:2154334; AT5G48930 shikimate quinate NA NA NA NA NA NA NA ENOG411DS3H O22928 PUSH_ARATH Putative tRNA pseudouridine synthase (EC 5.4.99.-) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 5.4.99.- 58972 Putative tRNA pseudouridine synthase (EC 5.4.99.-) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; tRNA pseudouridine synthesis [GO:0031119] locus:2065748; AT2G30320 tRNA pseudouridine synthase Os03g0338600 protein (tRNA pseudouridine synthase family protein, expressed) Q10LR0 Q10LR0_ORYSJ LOC_Os03g21980 Os03g0338600 OSNPB_030338600 ENOG411E55U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411DS36 F4KCQ9,F4KCR0 F4KCQ9_ARATH,F4KCR0_ARATH Tetratricopeptide repeat (TPR)-like superfamily protein R-ATH-8876198; 143481,143580 Tetratricopeptide repeat (TPR)-like superfamily protein cytoplasmic vesicle [GO:0031410]; pre-autophagosomal structure [GO:0000407]; TRAPPIII protein complex [GO:1990072]; ER to Golgi vesicle-mediated transport [GO:0006888]; nucleophagy [GO:0044804]; pexophagy [GO:0030242]; protein localization to pre-autophagosomal structure [GO:0034497] locus:2181387; AT5G16280 trafficking protein particle complex subunit 8-like Os03g0786900 protein (Fragment) A0A0N7KI63 A0A0N7KI63_ORYSJ Os03g0786900 OSNPB_030786900 ENOG411E55R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0359400 protein Q0DCA7 Q0DCA7_ORYSJ Os06g0359400 Os06g0359400 OsJ_21300 OSNPB_060359400 ENOG411DY0N CSLG1,CSLG3,CSLG2 Q570S7,Q0WVN5,Q8VYR4,A0A1P8B4V8,A0A1P8B8H8 CSLG1_ARATH,CSLG3_ARATH,CSLG2_ARATH,A0A1P8B4V8_ARATH,A0A1P8B8H8_ARATH Cellulose synthase-like protein G1 (AtCslG1) (EC 2.4.1.-),Cellulose synthase-like protein G3 (AtCslG3) (EC 2.4.1.-),Cellulose synthase-like protein G2 (AtCslG2) (EC 2.4.1.-),Cellulose synthase like G2,Cellulose synthase like G3 FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall. ARA:AT4G24010-MONOMER;,ARA:AT4G23990-MONOMER;,ARA:AT4G24000-MONOMER; 2.4.1.- 86573,85380,82120,60268,60812 Cellulose synthase-like protein G1 (AtCslG1) (EC 2.4.1.-),Cellulose synthase-like protein G3 (AtCslG3) (EC 2.4.1.-),Cellulose synthase-like protein G2 (AtCslG2) (EC 2.4.1.-),Cellulose synthase like G2,Cellulose synthase like G3 Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; cellulose synthase (UDP-forming) activity [GO:0016760]; cellulose synthase activity [GO:0016759]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244]; plant-type primary cell wall biogenesis [GO:0009833],integral component of membrane [GO:0016021]; cellulose synthase (UDP-forming) activity [GO:0016760]; cell wall organization [GO:0071555]; cellulose biosynthetic process [GO:0030244] TISSUE SPECIFICITY: Expressed in young seedlings, primarily in the vascular tissue. {ECO:0000269|PubMed:11554468}. locus:2138126;,locus:2138106;,locus:2138116; AT4G24010,AT4G23990,AT4G24000 cellulose synthase-like protein NA NA NA NA NA NA NA ENOG411DR3G SAE1B-1,SAE1B-2,SAE1A P0DI12,P0DI13,Q8VY78 SA1B1_ARATH,SA1B2_ARATH,SAE1A_ARATH SUMO-activating enzyme subunit 1B-1 (SUMO-activating enzyme subunit 1-2) (Ubiquitin-like 1-activating enzyme E1A),SUMO-activating enzyme subunit 1B-2 (SUMO-activating enzyme subunit 1-2) (Ubiquitin-like 1-activating enzyme E1A),SUMO-activating enzyme subunit 1A (SUMO-activating enzyme subunit 1-1) (Ubiquitin-like 1-activating enzyme E1A) DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:17644626}. FUNCTION: The dimeric enzyme acts as an E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1A. {ECO:0000269|PubMed:17644626}.,FUNCTION: The dimeric enzyme acts as an E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1A (By similarity). {ECO:0000250}.,FUNCTION: The dimeric enzyme acts as an E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1B. {ECO:0000269|PubMed:17644626}. PATHWAY: Protein modification; protein sumoylation. R-ATH-3065676; 35655,36123 SUMO-activating enzyme subunit 1B-1 (SUMO-activating enzyme subunit 1-2) (Ubiquitin-like 1-activating enzyme E1A),SUMO-activating enzyme subunit 1B-2 (SUMO-activating enzyme subunit 1-2) (Ubiquitin-like 1-activating enzyme E1A),SUMO-activating enzyme subunit 1A (SUMO-activating enzyme subunit 1-1) (Ubiquitin-like 1-activating enzyme E1A) cytoplasm [GO:0005737]; nucleus [GO:0005634]; SUMO activating enzyme activity [GO:0019948]; protein sumoylation [GO:0016925] locus:2159727;,locus:2832477;,locus:2117283; AT5G50580,AT5G50680,AT4G24940 sumo-activating enzyme Os11g0497000 protein (Ubiquitin activating enzyme, putative, expressed) (cDNA clone:001-013-C03, full insert sequence) Q2R3X8 Q2R3X8_ORYSJ LOC_Os11g30410 Os11g0497000 OSNPB_110497000 ENOG411DR3F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amylo-alpha-16-glucosidase Os02g0125600 protein (Fragment) C7IZ70 C7IZ70_ORYSJ Os02g0125600 Os02g0125600 OSNPB_020125600 ENOG411DR3E RPN13 O48726,A0A1P8B2X5 RPN13_ARATH,A0A1P8B2X5_ARATH 26S proteasome regulatory subunit RPN13 (AtRPN13) (26S proteasome non-ATPase regulatory subunit 13),Regulatory particle non-ATPase 13 DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:22751321}. FUNCTION: Functions as a proteasomal ubiquitin receptor. Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-63'-linked ubiquitin chains. {ECO:0000269|PubMed:21764993, ECO:0000269|PubMed:22751321}. R-ATH-5689603;R-ATH-5689880; 33297,32772 26S proteasome regulatory subunit RPN13 (AtRPN13) (26S proteasome non-ATPase regulatory subunit 13),Regulatory particle non-ATPase 13 cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome regulatory particle, lid subcomplex [GO:0008541]; endopeptidase activator activity [GO:0061133]; proteasome binding [GO:0070628]; ubiquitin binding [GO:0043130]; ubiquitin-dependent protein catabolic process [GO:0006511],cytoplasm [GO:0005737]; nucleus [GO:0005634] locus:2066200; AT2G26590 Adhesion regulating molecule family Os05g0594800 protein (Putative adhesion regulating molecule family) (cDNA clone:001-014-C10, full insert sequence) (cDNA clone:J013129L24, full insert sequence) Q5TKG0 Q5TKG0_ORYSJ Os05g0594800 OSJNBa0030I14.6 OSNPB_050594800 ENOG411DR3D CAF1-2,CAF1-6,CAF1-7 Q9S9P2,Q9SAI2,Q9SKZ2,F4HU15 CAF1B_ARATH,CAF1F_ARATH,CAF1G_ARATH,F4HU15_ARATH Probable CCR4-associated factor 1 homolog 2 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 6 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 7 (EC 3.1.13.4),Polynucleotidyl transferase, ribonuclease H-like superfamily protein FUNCTION: Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity). {ECO:0000250, ECO:0000269|PubMed:7791755}.,FUNCTION: Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity). {ECO:0000250}. 3.1.13.4 32635,31201,31543,32656 Probable CCR4-associated factor 1 homolog 2 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 6 (EC 3.1.13.4),Probable CCR4-associated factor 1 homolog 7 (EC 3.1.13.4),Polynucleotidyl transferase, ribonuclease H-like superfamily protein CCR4-NOT core complex [GO:0030015]; nucleus [GO:0005634]; P-body [GO:0000932]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [GO:0043928]; negative regulation of translation [GO:0017148]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleic acid binding [GO:0003676]; transferase activity [GO:0016740] TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:15010618}. locus:2200532;,locus:2045512;,locus:2025692; AT1G15920,AT1G80780,AT2G32070 CCR4-associated factor 1 homolog Os09g0416800 protein (Putative CCR4-NOT transcription complex subunit 7) (cDNA clone:J013021M02, full insert sequence) (cDNA clone:J013129L05, full insert sequence),Os02g0796300 protein (cDNA clone:001-040-B10, full insert sequence) (cDNA clone:001-132-B12, full insert sequence) (cDNA clone:J023149N08, full insert sequence) Q6EQ06,Q0DWT7 Q6EQ06_ORYSJ,Q0DWT7_ORYSJ P0014G10.21-1 P0707C02.41-1 Os09g0416800 OsJ_29372 OSNPB_090416800,Os02g0796300 Os02g0796300 OsJ_08719 OSNPB_020796300 ENOG411DR3C NEN4 F4JJ23 NEN4_ARATH Protein NEN4 (NAC45/NAC86-dependent exonuclease-domain protein 4) (EC 3.1.11.-) DISRUPTION PHENOTYPE: Shorter root phenotype and impaired phloem function. {ECO:0000269|PubMed:25081480}. FUNCTION: Probable exonuclease required for enuclation of sieve elements. {ECO:0000269|PubMed:25081480}. 3.1.11.- 28508 Protein NEN4 (NAC45/NAC86-dependent exonuclease-domain protein 4) (EC 3.1.11.-) nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676] TISSUE SPECIFICITY: Expressed in the sieve elements and phloem pole pericycle cells. {ECO:0000269|PubMed:25081480}. locus:2135302; AT4G39810 exonuclease nucleic acid binding NA NA NA NA NA NA NA ENOG411DR3B MAA21.8 Q8VYD7,Q3EAF4 Q8VYD7_ARATH,Q3EAF4_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein At3g63290),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Pollen development defective. 45885,34773 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Uncharacterized protein At3g63290),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein plasmodesma [GO:0009506]; oxidoreductase activity [GO:0016491]; pollen development [GO:0009555],oxidoreductase activity [GO:0016491] locus:2077289; AT3G63290 NA Expressed protein (Os10g0208500 protein) (cDNA clone:J013103P13, full insert sequence),Os10g0208500 protein (Fragment) Q8S6U1,A0A0P0XTM4 Q8S6U1_ORYSJ,A0A0P0XTM4_ORYSJ Os10g0208500 LOC_Os10g14180 OsJ_31028 OSJNBa0014J14.28 OSNPB_100208500,Os10g0208500 OSNPB_100208500 ENOG411DR3A CRD1 Q9M591,F4J0U9 CRD1_ARATH,F4J0U9_ARATH Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (EC 1.14.13.81) (Copper response defect 1 protein) (Dicarboxylate diiron protein) (AtZIP) (MPE-cyclase),Dicarboxylate diiron protein, putative (Crd1) Dwarf; Pale green; Chlorotic-P. Jensen-2008 FUNCTION: Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME). {ECO:0000269|PubMed:14673103, ECO:0000269|PubMed:18682427}. MISCELLANEOUS: Knock-down mutant (chl27-t) grow slowly with a pale green appearance. confers also severe defects in chloroplast development, including the unstacking of thylakoid membranes (PubMed:18682427). {ECO:0000305|PubMed:18682427}. PATHWAY: Porphyrin-containing compound metabolism; chlorophyll biosynthesis. ARA:AT3G56940-MONOMER;MetaCyc:AT3G56940-MONOMER; 1.14.13.81; 1.14.13.81 47631,39179 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (EC 1.14.13.81) (Copper response defect 1 protein) (Dicarboxylate diiron protein) (AtZIP) (MPE-cyclase),Dicarboxylate diiron protein, putative (Crd1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast inner membrane [GO:0009706]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; DNA binding [GO:0003677]; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity [GO:0048529]; metal ion binding [GO:0046872]; chlorophyll biosynthetic process [GO:0015995]; chloroplast organization [GO:0009658]; photosynthesis [GO:0015979]; regulation of tetrapyrrole metabolic process [GO:1901401],magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity [GO:0048529]; metal ion binding [GO:0046872]; chlorophyll biosynthetic process [GO:0015995]; photosynthesis [GO:0015979] locus:2080560; AT3G56940 Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (EC 1.14.13.81),Os01g0279100 protein (Fragment) Q9SDJ2,A0A0P0V0Z9 Q9SDJ2_ORYSJ,A0A0P0V0Z9_ORYSJ ZIP1 acsF Os01g0279100 OSNPB_010279100 P0003H10.2 P0025D05.31,Os01g0279100 OSNPB_010279100 FUNCTION: Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME). {ECO:0000256|HAMAP-Rule:MF_01840}. ENOG411DR3N Q9C890,Q9LIC9 Q9C890_ARATH,Q9LIC9_ARATH Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Protein kinase, putative; 86372-89112) (Uncharacterized protein At1g55200),Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 75348,83210 Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein (Protein kinase, putative; 86372-89112) (Uncharacterized protein At1g55200),Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein phosphorylation [GO:0006468],plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein serine/threonine kinase activity [GO:0004674]; transmembrane receptor protein serine/threonine kinase activity [GO:0004675]; cell surface receptor signaling pathway [GO:0007166]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468] locus:2035686;,locus:2091511; AT1G55200,AT3G13690 inactive protein kinase SELMODRAFT_444075-like Os01g0602800 protein (cDNA, clone: J090072P03, full insert sequence),Os05g0589700 protein (Unknow protein) (cDNA clone:J013130D08, full insert sequence) B7F9R5,Q6L560 B7F9R5_ORYSJ,Q6L560_ORYSJ Os01g0602800 OSNPB_010602800,Os05g0589700 OJ1115_D04.11 OSJNBa0022J22.5 OSNPB_050589700 ENOG411DR3K PWP2 Q8VYZ5 PWP2_ARATH Periodic tryptophan protein 2 (AtPWP2) DISRUPTION PHENOTYPE: Impaired maturation of 5.8S rRNA, especially the processing at the 5' end. Reduced siliques size due to defects in embryo and female gametophyte development (PubMed:23382868). Defects in guard cell function leading to reduced stomatal conductance and impaired water-use efficiency (PubMed:23185391). {ECO:0000269|PubMed:23185391, ECO:0000269|PubMed:23382868}. FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA. Plays a role early in ribosome biogenesis, especially in the maturation of 5.8S rRNA (PubMed:23382868). Required for guard cell functions (PubMed:23185391). {ECO:0000269|PubMed:23185391, ECO:0000269|PubMed:23382868}. R-ATH-6791226; 100471 Periodic tryptophan protein 2 (AtPWP2) Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; nucleolus [GO:0005730]; nucleus [GO:0005634]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; snoRNA binding [GO:0030515]; embryo sac development [GO:0009553]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; regulation of stomatal movement [GO:0010119]; response to sucrose [GO:0009744]; ribosomal small subunit assembly [GO:0000028]; rRNA processing [GO:0006364] TISSUE SPECIFICITY: Expressed constitutively and ubiquitously; observed in seeds, seedlings, roots, leaves, stems, flowers and siliques. {ECO:0000269|PubMed:23382868}. locus:2037798; AT1G15440 periodic tryptophan protein Os05g0519500 protein Q65X07,Q0DGP5 Q65X07_ORYSJ,Q0DGP5_ORYSJ Os05g0519500 OSNPB_050519500 P0599F04.11,Os05g0519500 Os05g0519500 OsJ_19230 OSNPB_050519500 ENOG411DR3I SAT32 Q9ASX8,F4HUS5,F4HUS7 Q9ASX8_ARATH,F4HUS5_ARATH,F4HUS7_ARATH At1g27760/T22C5_5 (Interferon-related developmental regulator family protein / IFRD protein family),Interferon-related developmental regulator family protein / IFRD protein family Reduced fertility. Increased root length (longer roots). Hypersensitive to salt stress. Long roots; Reduced fertility-C. Kim-2009 48119,48550,46861 At1g27760/T22C5_5 (Interferon-related developmental regulator family protein / IFRD protein family),Interferon-related developmental regulator family protein / IFRD protein family cytoplasm [GO:0005737]; nucleus [GO:0005634]; response to salt stress [GO:0009651] locus:2199231; AT1G27760 Interferon-related developmental regulator NA NA NA NA NA NA NA ENOG411DR3H A0A1P8AVN6,Q5Q0J2,Q5Q0J3 A0A1P8AVN6_ARATH,Q5Q0J2_ARATH,Q5Q0J3_ARATH Non-structural protein 20454,28956,30013 Non-structural protein locus:2014550; AT1G03180 NA Os05g0251400 protein (cDNA clone:J033150A11, full insert sequence) Q6AVD4 Q6AVD4_ORYSJ Os05g0251400 OJ1171_H02.9 OSNPB_050251400 ENOG411DR3W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR_CC Os02g0200900 protein (Putative F-box protein),Os02g0200900 protein (Fragment) Q6Z795,Q6Z796,A0A0P0VG50,A0A0P0VGC4 Q6Z795_ORYSJ,Q6Z796_ORYSJ,A0A0P0VG50_ORYSJ,A0A0P0VGC4_ORYSJ P0419A09.13-2 Os02g0200900 OSNPB_020200900,P0419A09.13-1 Os02g0200900 OsJ_05792 OSNPB_020200900,Os02g0200900 OSNPB_020200900 ENOG411DR3V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAS domain family NA NA NA NA NA NA NA ENOG411DR3U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0646000 protein Q0JKW0 Q0JKW0_ORYSJ Os01g0646000 Os01g0646000 OSNPB_010646000 ENOG411DR3P BAM6,BAM5 Q8L762,P25853,A0A1P8B7H0 BAM6_ARATH,BAM5_ARATH,A0A1P8B7H0_ARATH Beta-amylase 6 (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 5),Beta-amylase 5 (AtBeta-Amy) (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Protein REDUCED BETA AMYLASE 1),Beta-amylase (EC 3.2.1.2) DISRUPTION PHENOTYPE: Almost complete loss of beta-amylase activity in rosette leaves and inflorescences (stems). {ECO:0000269|PubMed:11743123}. Plants cold-shocked for 6h have an increased starch content compared to wildtype. FUNCTION: Beta-amylase activity. Major cytosolic beta-amylase isoform in rosette leaves and inflorescences stems. {ECO:0000269|PubMed:11743123}. ARA:AT2G32290-MONOMER; 3.2.1.2 66568,56063,50143 Beta-amylase 6 (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 5),Beta-amylase 5 (AtBeta-Amy) (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Protein REDUCED BETA AMYLASE 1),Beta-amylase (EC 3.2.1.2) chloroplast [GO:0009507]; amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; polysaccharide catabolic process [GO:0000272],cytosol [GO:0005829]; amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; response to herbivore [GO:0080027]; starch catabolic process [GO:0005983],amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; polysaccharide catabolic process [GO:0000272] TISSUE SPECIFICITY: Detected in phloem sieve elements. {ECO:0000269|PubMed:8552713}. locus:2062535;,locus:2129810; AT2G32290,AT4G15210 beta-amylase Beta-amylase (EC 3.2.1.2),Beta-amylase (EC 3.2.1.2) (Fragment) A0A0P0X7C2,A0A0P0X7F9 A0A0P0X7C2_ORYSJ,A0A0P0X7F9_ORYSJ Os07g0543100 OSNPB_070543100,Os07g0543300 OSNPB_070543300 ENOG411DR3Z CSN8 P43255 CSN8_ARATH COP9 signalosome complex subunit 8 (CSN complex subunit 8) (Constitutive photomorphogenesis protein 9) (Protein FUSCA 7) In the homozygous progeny anthocyanin accumulation (purple coloration) in the cotelydons of developing embryos.,In the homozygous progeny the mutation triggers the instability of CSN1 CSN3 CSN5 CSN6 and CSN7. The only subunits that do not seem do be significantly affected are CSN2 and CSN4. Seedling lethal; Red embryos and cotyledons due to anthocyanin accumulation; Dark-grown seedlings are de-etiolated-X. Deng-1994 FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. {ECO:0000269|PubMed:11337587}. R-ATH-5696394;R-ATH-6781823;R-ATH-8951664; 22547 COP9 signalosome complex subunit 8 (CSN complex subunit 8) (Constitutive photomorphogenesis protein 9) (Protein FUSCA 7) COP9 signalosome [GO:0008180]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; metalloendopeptidase activity [GO:0004222]; COP9 signalosome assembly [GO:0010387]; multicellular organism development [GO:0007275]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]; response to jasmonic acid [GO:0009753]; response to light stimulus [GO:0009416] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:8953769}. locus:2129435; AT4G14110 COP9 signalosome complex subunit Os04g0428900 protein (cDNA clone:006-303-H11, full insert sequence) (cDNA clone:J023069F08, full insert sequence) Q0JD68 Q0JD68_ORYSJ Os04g0428900 Os04g0428900 OsJ_14828 OSNPB_040428900 ENOG411DR3X PIP5K8,PIP5K5,PIP5K7,PIP5K6,PIP5K4 Q8RY89,Q9SLG9,Q9SUI2,Q9SFB8,Q9M1K2,A0A1I9LMX2,F4HRM3,A0A1I9LMX3 PI5K8_ARATH,PI5K5_ARATH,PI5K7_ARATH,PI5K6_ARATH,PI5K4_ARATH,A0A1I9LMX2_ARATH,F4HRM3_ARATH,A0A1I9LMX3_ARATH Phosphatidylinositol 4-phosphate 5-kinase 8 (AtPIP5K8) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 8) (Diphosphoinositide kinase 8) (PtdIns(4)P-5-kinase 8),Phosphatidylinositol 4-phosphate 5-kinase 5 (AtPIP5K5) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 5) (Diphosphoinositide kinase 5) (PtdIns(4)P-5-kinase 5),Phosphatidylinositol 4-phosphate 5-kinase 7 (AtPIP5K7) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 7) (Diphosphoinositide kinase 7) (AtP5K2) (PtdIns(4)P-5-kinase 7),Phosphatidylinositol 4-phosphate 5-kinase 6 (AtPIP5K6) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 6) (Diphosphoinositide kinase 6) (PtdIns(4)P-5-kinase 6),Phosphatidylinositol 4-phosphate 5-kinase 4 (AtPIP5K4) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 4) (Diphosphoinositide kinase 4) (PtdIns(4)P-5-kinase 4),Phosphatidylinositol-4-phosphate 5-kinase family protein Pollen harvested from pip5k4 pip5k5 mutants germinates at a lower rate than wild type pollen and pollen tube growth is slowed. However the general shape of the pollen tubes is normal.,pip5k5 mutants do not show any obvious defects in pollen germination or pollen tube growth. But these processes are compromised in pip5k4 pip5k5 double mutants.,Epidermal strips of pip5k4 plants treated with exogenous PtdIns(45)P2 were incubated in medium containing 10 μM PtdIns(45)P2 and irradiated with white light after which stomatal apertures were measured. A reduction in the light-induced opening of peeled epidermis was observed compared with that in detached whole leaves. Stomatal apertures reached maximal opening after 4 h of illumination. The stomatal apertures of PtdIns(45)P2-treated pip5k4 (2.94 μm) were similar to those of WT (3.02 μm) and significantly larger than those of pip5k4 without treatment (2.32 μm). The stomatal apertures of PtdIns(4)P- and PtdIns(34)P2- treated pip5k4 plants were not significantly different from those of untreated pip5k4 plants.,Under natural light the pip5k4 mutant exhibited delayed stomatal opening and this phenotype was confirmed by performing a stomatal opening test in the dark or under white light irradiation. At the beginning of the photoperiod (T = 0 h) the apertures of pip5k4 stomata did not differ significantly from WT whereas after 3 h of illumination with 170 ;mol m-2 sec-1 white light the mean aperture size of pip5k4 stomata (2.78 ;m) was significantly smaller than that of WT. Delayed, decreased stomatal opening-Y. Lee-2007 ARA:AT1G60890-MONOMER;,ARA:AT2G41210-MONOMER;,ARA:AT1G10900-MONOMER;,ARA:AT3G07960-MONOMER;,ARA:AT3G56960-MONOMER; R-ATH-1660499;R-ATH-6811558;R-ATH-8856828; 2.7.1.68 87403,88204,85955,81422,89238,68743,88648,70396 Phosphatidylinositol 4-phosphate 5-kinase 8 (AtPIP5K8) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 8) (Diphosphoinositide kinase 8) (PtdIns(4)P-5-kinase 8),Phosphatidylinositol 4-phosphate 5-kinase 5 (AtPIP5K5) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 5) (Diphosphoinositide kinase 5) (PtdIns(4)P-5-kinase 5),Phosphatidylinositol 4-phosphate 5-kinase 7 (AtPIP5K7) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 7) (Diphosphoinositide kinase 7) (AtP5K2) (PtdIns(4)P-5-kinase 7),Phosphatidylinositol 4-phosphate 5-kinase 6 (AtPIP5K6) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 6) (Diphosphoinositide kinase 6) (PtdIns(4)P-5-kinase 6),Phosphatidylinositol 4-phosphate 5-kinase 4 (AtPIP5K4) (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase 4) (Diphosphoinositide kinase 4) (PtdIns(4)P-5-kinase 4),Phosphatidylinositol-4-phosphate 5-kinase family protein 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524],apical plasma membrane [GO:0016324]; cytosol [GO:0005829]; pollen tube [GO:0090406]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524]; phosphatidylinositol metabolic process [GO:0046488]; plant-type cell wall modification [GO:0009827]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860],plasma membrane [GO:0005886]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524],apical plasma membrane [GO:0016324]; pollen tube [GO:0090406]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524]; clathrin-dependent endocytosis [GO:0072583],apical plasma membrane [GO:0016324]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; pollen tube [GO:0090406]; 1-phosphatidylinositol-4-phosphate 5-kinase activity [GO:0016308]; ATP binding [GO:0005524]; endocytosis [GO:0006897]; establishment of tissue polarity [GO:0007164]; phosphatidylinositol metabolic process [GO:0046488]; plant-type cell wall modification [GO:0009827]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]; stomatal movement [GO:0010118],ATP binding [GO:0005524]; phosphatidylinositol phosphate kinase activity [GO:0016307] locus:2040327;,locus:2197454;,locus:2077397;,locus:2080585;,locus:2206086; AT1G60890,AT2G41210,AT1G10900,AT3G07960,AT3G56960 phosphatidylinositol-4-phosphate 5-kinase Phosphatidylinositol 4-phosphate 5-kinase 1 (EC 2.7.1.68) (1-phosphatidylinositol 4-phosphate kinase) (Diphosphoinositide kinase) (PIP5K) (PtdIns(4)P-5-kinase),Os03g0701800 protein (Fragment) Q6EX42,A0A0P0W2M6,A0A0P0W1W4 PI5K1_ORYSJ,A0A0P0W2M6_ORYSJ,A0A0P0W1W4_ORYSJ PIPK1 Os03g0701800 LOC_Os03g49510,Os03g0701800 OSNPB_030701800 FUNCTION: Involved in flowering. May suppress floral initiation by modifying the expression of genes related to floral induction. {ECO:0000269|PubMed:15159629}. MISCELLANEOUS: Transgenic plants suppressing PIPK1 show earlier heading (7 to 14 days earlier), delayed leaf development (a common phenotype observed with earlier flowering), and greater expression of floral induction genes. ENOG411DR37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA expressed protein Expressed protein (Os03g0228200 protein) (cDNA clone:001-027-D04, full insert sequence) Q10PM9 Q10PM9_ORYSJ Os03g0228200 LOC_Os03g12700 Os03g0228200 OSNPB_030228200 ENOG411DR35 CPK7,CPK10,CPK13,CPK30,CPK8 Q38873,Q9M9V8,Q8W4I7,Q9SSF8,Q42438,A0A1I9LP02,F4K0Z2,A0A1I9LP01 CDPK7_ARATH,CDPKA_ARATH,CDPKD_ARATH,CDPKU_ARATH,CDPK8_ARATH,A0A1I9LP02_ARATH,F4K0Z2_ARATH,A0A1I9LP01_ARATH Calcium-dependent protein kinase 7 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 7),Calcium-dependent protein kinase 10 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK1) (AtCDPK1),Calcium-dependent protein kinase 13 (EC 2.7.11.1),Calcium-dependent protein kinase 30 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK1a) (AtCDPK1a),Calcium-dependent protein kinase 8 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK19) (AtCDPK19),Calcium-dependent protein kinase 13,Calmodulin-domain protein kinase 7 Sensitive to drought-W. Wu-2010 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. May be a positive regulator controlling stress signal transduction. {ECO:0000269|PubMed:8078458, ECO:0000269|PubMed:8943201}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. May be a positive regulator controlling stress signal transduction. Acts as a calcium sensor involved in the hormone-signaling pathways. {ECO:0000269|PubMed:8943201}. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 60310,61460,59376,61404,59941,56719,49566,46901 Calcium-dependent protein kinase 7 (EC 2.7.11.1) (Calmodulin-domain protein kinase CDPK isoform 7),Calcium-dependent protein kinase 10 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK1) (AtCDPK1),Calcium-dependent protein kinase 13 (EC 2.7.11.1),Calcium-dependent protein kinase 30 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK1a) (AtCDPK1a),Calcium-dependent protein kinase 8 (EC 2.7.11.1) (Calcium-dependent protein kinase isoform CDPK19) (AtCDPK19),Calcium-dependent protein kinase 13,Calmodulin-domain protein kinase 7 cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein kinase activity [GO:0004672]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Highly expressed in root. locus:505006616;,locus:2011201;,locus:2074338;,locus:2027227;,locus:2150230; AT5G12480,AT1G18890,AT3G51850,AT1G74740,AT5G19450 calcium-dependent protein kinase Calcium-dependent protein kinase 9 (OsCDPK9) (OsCPK9) (EC 2.7.11.1),Calcium-dependent protein kinase 20 (OsCDPK20) (OsCPK20) (EC 2.7.11.1),Calcium-dependent protein kinase 3 (OsCDPK3) (OsCPK3) (EC 2.7.11.1),Calcium-dependent protein kinase 8 (OsCDPK8) (OsCPK8) (EC 2.7.11.1),Calcium-dependent protein kinase 16 (OsCDPK16) (OsCPK16) (EC 2.7.11.1),Os05g0467000 protein (Fragment),Os07g0568600 protein (Fragment) Q6AVI8,Q84SL0,Q8LPZ7,Q75GE8,Q6I5I8,A0A0P0WNG9,A0A0N7KNP7 CDPK9_ORYSJ,CDPKK_ORYSJ,CDPK3_ORYSJ,CDPK8_ORYSJ,CDPKG_ORYSJ,A0A0P0WNG9_ORYSJ,A0A0N7KNP7_ORYSJ CPK9 Os03g0688300 LOC_Os03g48270 OSJNBa0022C08.19,CPK20 Os07g0568600 LOC_Os07g38120 OJ1092_A07.132 OsJ_24795,CPK3 Os01g0832300 LOC_Os01g61590 OsJ_03967 P0460C04.4,CPK8 Os03g0808600 LOC_Os03g59390 OsJ_13049 OSJNBa0028F23.27 OSJNBa0060M17.7,CPK16 Os05g0467000 LOC_Os05g39090 OJ1387_F08.13 OSJNBa0009E21.17,Os05g0467000 OSNPB_050467000,Os07g0568600 OSNPB_070568600 FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity). Functions in signal transduction pathways that positively regulate responses to drought, osmotic, and dehydration stress. Regulates expression of stress-associated genes in response to drought. Involved in tolerance to drought stress by increasing proline and soluble sugars, and improving stomatal closure. Required for pollen maturation and spikelet fertility (PubMed:24884869). {ECO:0000250|UniProtKB:Q06850, ECO:0000269|PubMed:24884869}.,FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. {ECO:0000250|UniProtKB:Q06850}. MISCELLANEOUS: Plants over-expressing CPK9 show increased tolerance to drought, osmotic, and dehydration stresses, and improved pollen maturation and spikelet fertility under normal growth conditions. Plants silencing CPK9 show decreased tolerance to drought, osmotic, and dehydration stresses, and diminished pollen maturation and spikelet fertility under normal growth conditions. {ECO:0000269|PubMed:24884869}. ENOG411DR34 ACBP5,ACBP4 Q8RWD9,Q9MA55,A0A1P8BFF0,A0A1P8BFG3,A0A1P8BFD3 ACBP5_ARATH,ACBP4_ARATH,A0A1P8BFF0_ARATH,A0A1P8BFG3_ARATH,A0A1P8BFD3_ARATH Acyl-CoA-binding domain-containing protein 5 (Acyl-CoA binding protein 5),Acyl-CoA-binding domain-containing protein 4 (Acyl-CoA binding protein 4),Acyl-CoA binding protein 5 FUNCTION: Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters (By similarity). {ECO:0000250, ECO:0000269|PubMed:15604682}.,FUNCTION: Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids. {ECO:0000269|PubMed:15604682, ECO:0000269|PubMed:18773301}. 71009,73075,73292,71637,62823 Acyl-CoA-binding domain-containing protein 5 (Acyl-CoA binding protein 5),Acyl-CoA-binding domain-containing protein 4 (Acyl-CoA binding protein 4),Acyl-CoA binding protein 5 cytosol [GO:0005829]; fatty-acyl-CoA binding [GO:0000062]; lipid binding [GO:0008289]; lipid transport [GO:0006869]; response to hypoxia [GO:0001666]; response to light stimulus [GO:0009416],cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; fatty-acyl-CoA binding [GO:0000062]; lipid binding [GO:0008289]; lipid transport [GO:0006869]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to light stimulus [GO:0009416],fatty-acyl-CoA binding [GO:0000062] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:15604682}.,TISSUE SPECIFICITY: Mostly expressed in roots, stems, and leaves, and, to a lower extent, in flowers and siliques. {ECO:0000269|PubMed:15604682, ECO:0000269|PubMed:18836139}. locus:2143676;,locus:2079777; AT5G27630,AT3G05420 acyl-CoA-binding domain-containing protein Os03g0835600 protein (Fragment) A0A0P0W559 A0A0P0W559_ORYSJ Os03g0835600 OSNPB_030835600 ENOG411DR33 MYB4,MYB32 Q9SZP1,O49608 MYB4_ARATH,MYB32_ARATH Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4),Transcription factor MYB32 (Myb-related protein 32) (AtMYB32) DISRUPTION PHENOTYPE: Defects lead to a better tolerance of UV-B irradiation due to the increase in sinapate ester accumulation. {ECO:0000269|PubMed:11080161}. Resistant to UV-B light; Elevated sinapate ester levels in leaves-C. Martin-2000,Collapsed pollen; Homozygotes are viable: Reduced fertility-R. Parish-2004 FUNCTION: Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. 31808,31458 Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4),Transcription factor MYB32 (Myb-related protein 32) (AtMYB32) nucleus [GO:0005634]; DNA binding [GO:0003677]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; negative regulation of sinapate ester biosynthetic process [GO:1903086]; negative regulation of transcription, DNA-templated [GO:0045892]; regulation of phenylpropanoid metabolic process [GO:2000762]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to UV-B [GO:0010224]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}.,TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. locus:2121259;,locus:2131576; AT4G38620,AT4G34990 transcription factor MYB transcription factor (Os09g0538400 protein) (Putative Myb-related protein Zm38) (cDNA clone:006-202-H01, full insert sequence) (cDNA clone:006-203-E04, full insert sequence) (cDNA clone:006-301-B02, full insert sequence) Q69JE8 Q69JE8_ORYSJ Os09g0538400 OsJ_30158 OSNPB_090538400 P0229B10.25 ENOG411DR32 Q5EAH9 Q5EAH9_ARATH At3g55760 65573 At3g55760 chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; starch grain [GO:0043036]; starch binding [GO:2001070]; starch metabolic process [GO:0005982] locus:2079001; AT3G55760 NA Os11g0586300 protein (Fragment) Q0IRY4,A0A0P0Y4J6 Q0IRY4_ORYSJ,A0A0P0Y4J6_ORYSJ Os11g0586300 OSNPB_110586300 ENOG411DR31 O48815,F4IVY6 O48815_ARATH,F4IVY6_ARATH At2g39670/F17A14.4 (Expressed protein) (Radical SAM superfamily protein) (Uncharacterized protein At2g39670) (Uncharacterized protein At2g39670; F17A14.4),Radical SAM superfamily protein 47351,47766 At2g39670/F17A14.4 (Expressed protein) (Radical SAM superfamily protein) (Uncharacterized protein At2g39670) (Uncharacterized protein At2g39670; F17A14.4),Radical SAM superfamily protein cytoplasm [GO:0005737]; iron-sulfur cluster binding [GO:0051536]; RNA methyltransferase activity [GO:0008173]; rRNA base methylation [GO:0070475]; tRNA methylation [GO:0030488],cytoplasm [GO:0005737]; iron-sulfur cluster binding [GO:0051536]; rRNA methyltransferase activity [GO:0008649]; tRNA methyltransferase activity [GO:0008175]; rRNA base methylation [GO:0070475] locus:2043225; AT2G39670 Ribosomal RNA large subunit methyltransferase Os01g0973400 protein (Radical SAM domain-containing protein-like) (cDNA clone:001-043-F02, full insert sequence) (cDNA clone:006-302-E03, full insert sequence) (cDNA clone:J013060D04, full insert sequence) (cDNA clone:J013170C09, full insert sequence) Q5JM88 Q5JM88_ORYSJ Os01g0973400 Os01g0973400 OSNPB_010973400 P0518C01.42 P0698H10.16 ENOG411DR39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA transcriptional corepressor NA NA NA NA NA NA NA ENOG411DR38 SBE2.2,SBE2.1 Q9LZS3,O23647 GLGB2_ARATH,GLGB1_ARATH 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic (AtSBE II-2) (EC 2.4.1.18) (Branching enzyme 2) (AtBE2) (Starch-branching enzyme 2-2),1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic (AtSBE II-1) (EC 2.4.1.18) (Branching enzyme 3) (AtBE3) (Starch-branching enzyme 2-1) DISRUPTION PHENOTYPE: Modified starch composition. This phenotype is enhanced when associated with SBE2.1 and SBE3 disruptions. {ECO:0000269|PubMed:17028209}.,DISRUPTION PHENOTYPE: Modified starch composition. This phenotype is enhanced when associated with SBE2.2 and SBE3 disruptions. {ECO:0000269|PubMed:17028209}. No visible phenotype.,Strong reduction in maltose accumulation compared to the be2-1 be3-2 double mutant.,Displays the same profile of polymerization (DP) as the corresponding be2 or be3 mutant.,Absence of starch and accumulation of very high levels of water-soluble glucans.,Contains 90% of α-maltose and 10% of β-maltose.,Increased starch phosphorylase activity compared to wild type.,Low growth and flowering rates.,No starch branching enzyme activity detected.,Pale colour.,Reduced size of the mature plant. Thirty days after seed germination the fresh weight of this mutant is one-fifth of that of wild type.,The levels of sucrose fructose glucose 6-phosphate and glucose 1-phosphate are not significantly deviating from those of wild type or the single mutants.,The maltose accumulates mostly in the cytosol (~80%).,The mutant is still able to produce siliques and viable seeds.,Water-soluble glycans are composed of very short malto-oligosaccharides made of 80% maltose 14% maltotriose and 6% glucose.,Wilting of the inflorescence.,DP 6-7 and DP 5-9 chains are slightly decreased whereas DP 10-16 chains are slightly increased (DP degree of polymerization).,Starch branching enzyme activity unaffected (similar to wild type levels).,Starch granules are slightly larger than those of wild type. Abnormal amylopectin structure-C. D’Hulst-2006 FUNCTION: Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. {ECO:0000269|PubMed:17028209}. PATHWAY: Glycan biosynthesis; starch biosynthesis. ARA:AT5G03650-MONOMER;,ARA:AT2G36390-MONOMER; 2.4.1.18 92591,97660 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic (AtSBE II-2) (EC 2.4.1.18) (Branching enzyme 2) (AtBE2) (Starch-branching enzyme 2-2),1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic (AtSBE II-1) (EC 2.4.1.18) (Branching enzyme 3) (AtBE3) (Starch-branching enzyme 2-1) amyloplast [GO:0009501]; chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; 1,4-alpha-glucan branching enzyme activity [GO:0003844]; 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) [GO:0102752]; cation binding [GO:0043169]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; amylopectin biosynthetic process [GO:0010021]; cellular response to fructose stimulus [GO:0071332]; cellular response to glucose stimulus [GO:0071333]; cellular response to light stimulus [GO:0071482]; cellular response to sucrose stimulus [GO:0071329]; glycogen biosynthetic process [GO:0005978]; starch biosynthetic process [GO:0019252]; starch metabolic process [GO:0005982] TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, inflorescences, seeds and flowers. {ECO:0000269|PubMed:17698298, ECO:0000269|PubMed:8616246}.,TISSUE SPECIFICITY: Mostly expressed in roots, stems, seeds, inflorescences, flowers and leaves, and, to a lower extent, in seedlings. {ECO:0000269|PubMed:17698298, ECO:0000269|PubMed:8616246}. locus:2144608;,locus:2044903; AT5G03650,AT2G36390 starch branching enzyme Os02g0528200 protein (Fragment) A0A0N7KFE7 A0A0N7KFE7_ORYSJ Os02g0528200 OSNPB_020528200 ENOG411DY0R EXO84C Q9SY60 EX84C_ARATH Exocyst complex component EXO84C (AtExo80c) FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall (By similarity). {ECO:0000250}. 86683 Exocyst complex component EXO84C (AtExo80c) exocyst [GO:0000145]; acceptance of pollen [GO:0060321]; exocyst assembly [GO:0001927]; exocyst localization [GO:0051601] locus:2012768; AT1G10180 Inherit from KOG: Exocyst complex component NA NA NA NA NA NA NA ENOG411DY0V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Probable glucuronosyltransferase GUT1 (EC 2.4.-.-) (Glucuronoxylan glucuronosyltransferase 1) (OsGUT1),Os10g0180000 protein (Fragment),Os10g0180000 protein Q33AH8,A0A0P0XSX0,A0A0N7KRI5 GT101_ORYSJ,A0A0P0XSX0_ORYSJ,A0A0N7KRI5_ORYSJ GUT1 Os10g0180000 LOC_Os10g10080 OSJNBa0047G15.26 OSJNBa0095J15.1,Os10g0180000 OSNPB_100180000 FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls. {ECO:0000250}. ENOG411E55E ATL63 Q9LUZ9 ATL63_ARATH RING-H2 finger protein ATL63 (EC 2.3.2.27) (Protein ARABIDOPSIS TOXICOS EN LEVADURA 63) (Protein ATL63) (RING-type E3 ubiquitin transferase ATL63) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 34295 RING-H2 finger protein ATL63 (EC 2.3.2.27) (Protein ARABIDOPSIS TOXICOS EN LEVADURA 63) (Protein ATL63) (RING-type E3 ubiquitin transferase ATL63) early endosome [GO:0005769]; endosome [GO:0005768]; Golgi-associated vesicle [GO:0005798]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; cellular response to osmotic stress [GO:0071470]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of endocytosis [GO:0030100]; regulation of reactive oxygen species biosynthetic process [GO:1903426]; regulation of response to salt stress [GO:1901000] locus:2178788; AT5G58580 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411DY08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:MuDR NA NA NA NA NA NA NA ENOG411DY03 F4JS74,F4JS75,A0A1P8B4T0 F4JS74_ARATH,F4JS75_ARATH,A0A1P8B4T0_ARATH P-loop containing nucleoside triphosphate hydrolases superfamily protein 54303,54077,54390 P-loop containing nucleoside triphosphate hydrolases superfamily protein integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; hydrolase activity [GO:0016787] locus:2123236; AT4G13030 NA Os05g0274300 protein Q6ATE2 Q6ATE2_ORYSJ Os05g0274300 Os05g0274300 OsJ_17875 OSJNBa0018H09.1 OSNPB_050274300 ENOG411E55A MXH1.15 Q9SI35,Q9FKH4,F4IFD7 Q9SI35_ARATH,Q9FKH4_ARATH,F4IFD7_ARATH Carbohydrate-binding X8 domain superfamily protein (Uncharacterized protein At2g04910),At5g35740 (Carbohydrate-binding X8 domain superfamily protein) (Similarity to beta-1),Carbohydrate-binding X8 domain superfamily protein ARA:GQT-1582-MONOMER; 13857,13398,11580 Carbohydrate-binding X8 domain superfamily protein (Uncharacterized protein At2g04910),At5g35740 (Carbohydrate-binding X8 domain superfamily protein) (Similarity to beta-1),Carbohydrate-binding X8 domain superfamily protein anchored component of plasma membrane [GO:0046658]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; polysaccharide binding [GO:0030247] locus:2045029;,locus:2177256; AT2G04910,AT5G35740 glucan endo-1-3-beta-glucosidase NA NA NA NA NA NA NA ENOG411DY04 Q9ZQF1 PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial 71046 Pentatricopeptide repeat-containing protein At2g15630, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2053552; AT2G15630 Pentatricopeptide repeat-containing protein Os04g0477200 protein A0A0P0WBL1 A0A0P0WBL1_ORYSJ Os04g0477200 OSNPB_040477200 ENOG411E55C KINB3 Q9ZUU8 KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3 (AKIN subunit beta-3) (AKINB3) (AKINbeta3) FUNCTION: Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. 12705 SNF1-related protein kinase regulatory subunit beta-3 (AKIN subunit beta-3) (AKINB3) (AKINbeta3) protein kinase regulator activity [GO:0019887]; carbohydrate metabolic process [GO:0005975]; cellular response to nitrogen levels [GO:0043562]; response to sucrose [GO:0009744] TISSUE SPECIFICITY: Expressed in rosette (at the protein level). Expressed in the whole plant and at the different developmental stage with a higher level in stems. {ECO:0000269|PubMed:15803412}. locus:2046208; AT2G28060 SNF1-related protein kinase regulatory subunit Os09g0364900 protein (Putative AKIN beta3) (cDNA clone:J013133A10, full insert sequence) (cDNA clone:J023006L01, full insert sequence) Q69NJ8 Q69NJ8_ORYSJ OJ1001_G09.33-1 P0441A12.12-1 Os09g0364900 OSNPB_090364900 ENOG411EFCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UAA transporter family NA NA NA NA NA NA NA ENOG411EFCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF702) NA NA NA NA NA NA NA ENOG411EFCG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PH domain NA NA NA NA NA NA NA ENOG411EFCP Q9LJV5,A0A1I9LPW5 Q9LJV5_ARATH,A0A1I9LPW5_ARATH At3g30460 (RING zinc finger protein) (RING/U-box superfamily protein),RING/U-box superfamily protein 16940,21326 At3g30460 (RING zinc finger protein) (RING/U-box superfamily protein),RING/U-box superfamily protein ubiquitin protein ligase activity [GO:0061630]; zinc ion binding [GO:0008270]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein polyubiquitination [GO:0000209]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787],zinc ion binding [GO:0008270] locus:2093335; AT3G30460 Zinc finger (C3HC4-type RING finger) family protein NA NA NA NA NA NA NA ENOG411EFCQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAP_fibrillin NA NA NA NA NA NA NA ENOG411EFCW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: optic atrophy 3 (autosomal recessive with chorea and spastic paraplegia) NA NA NA NA NA NA NA ENOG411DTBF BASS3 Q8RXE8 BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic (Bile acid transporter 3) (Bile acid-sodium symporter family protein 3) FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. R-ATH-425366; 45560 Probable sodium/metabolite cotransporter BASS3, chloroplastic (Bile acid transporter 3) (Bile acid-sodium symporter family protein 3) chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; transport [GO:0006810] locus:2094483; AT3G25410 bile acid sodium symporter family protein Probable sodium/metabolite cotransporter BASS3, chloroplastic (Bile acid-sodium symporter family protein 3) Q6K739 BASS3_ORYSJ BASS3 Os02g0475400 LOC_Os02g27490 P0419C03.11 FUNCTION: May function as sodium-coupled metabolite transporter across the chloroplast envelope. {ECO:0000250}. ENOG411E1DR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA U-box domain Os02g0665800 protein A0A0P0VMX2 A0A0P0VMX2_ORYSJ Os02g0665800 OSNPB_020665800 ENOG411E1DP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LA Os09g0540900 protein A0A0P0XR18 A0A0P0XR18_ORYSJ Os09g0540900 OSNPB_090540900 ENOG411E1DT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetraspanin family NA NA NA NA NA NA NA ENOG411E1DZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EGF_CA Os10g0116600 protein,Os10g0116701 protein,Os10g0174933 protein,Os10g0174548 protein,Os10g0174800 protein A0A0N7KRC9,A0A0P0XRH3,A0A0P0XSK1,A0A0P0XS43,A0A0P0XS49 A0A0N7KRC9_ORYSJ,A0A0P0XRH3_ORYSJ,A0A0P0XSK1_ORYSJ,A0A0P0XS43_ORYSJ,A0A0P0XS49_ORYSJ Os10g0116600 OSNPB_100116600,Os10g0116701 OSNPB_100116701,Os10g0174933 OSNPB_100174933,Os10g0174548 OSNPB_100174548,Os10g0174800 OSNPB_100174800 ENOG411E1DY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetyltransferase (GNAT) family Acetyl transferase (GCN5-related N-acetyltransferase-like) (Os06g0650300 protein) Q67UR2 Q67UR2_ORYSJ OsglHAT1 Os06g0650300 OSNPB_060650300 P0453H04.20 ENOG411E1DC MIK19.31 Q9FJS9 Q9FJS9_ARATH At5g56840 (MYB transcription factor) (Myb-like transcription factor family protein) (Similarity to Myb-related transcription activator) 25317 At5g56840 (MYB transcription factor) (Myb-like transcription factor family protein) (Similarity to Myb-related transcription activator) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2165106; AT5G56840 Transcription factor NA NA NA NA NA NA NA ENOG411E1DD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os02g0558400 protein (Putative resistance protein LR10),NB-ARC domain containing protein, expressed (Os12g0564800 protein),Os11g0261400 protein Q6YVX3,Q2QNI0,A0A0P0Y164 Q6YVX3_ORYSJ,Q2QNI0_ORYSJ,A0A0P0Y164_ORYSJ Os02g0558400 OsJ_07150 OSJNBb0038F20.17 OSNPB_020558400,LOC_Os12g37740 Os12g0564800 OSNPB_120564800,Os11g0261400 OSNPB_110261400 ENOG411E1DH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (F-box domain containing protein, expressed) (Os03g0638900 protein),Os12g0609900 protein Q75J50,A0A0N7KUC4 Q75J50_ORYSJ,A0A0N7KUC4_ORYSJ OSJNBb0029I19.8 LOC_Os03g43770 Os03g0638900 OSJNBa0066H15.1 OSNPB_030638900,Os12g0609900 OSNPB_120609900 ENOG411E1D3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Root cap NA NA NA NA NA NA NA ENOG411E1D6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein tyrosine kinase NA NA NA NA NA NA NA ENOG411E1D5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ammonium transporter NA NA NA NA NA NA NA ENOG411E1D8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCP family transcription factor Os05g0513100 protein (Putative TCP transcription factor) (TCP transcription factor) (cDNA clone:J023038I07, full insert sequence) Q5TKH1 Q5TKH1_ORYSJ TCP11 Os05g0513100 B1155G07.11 OSNPB_050513100 ENOG411E1D9 SEP1,SEP2 P29382,P29384,F4KB90,A0A1I9LM64 SEP1_ARATH,SEP2_ARATH,F4KB90_ARATH,A0A1I9LM64_ARATH Developmental protein SEPALLATA 1 (Agamous-like MADS-box protein AGL2),Developmental protein SEPALLATA 2 (Agamous-like MADS-box protein AGL4),K-box region and MADS-box transcription factor family protein DISRUPTION PHENOTYPE: Triple mutations in the SEP1, SEP2 and SEP3 genes result in the replacement of the stamens and petals by sepals and of the carpels by a new mutant flower with sepaloid organs. {ECO:0000269|PubMed:10821278}.,DISRUPTION PHENOTYPE: Triple mutations in the SEP1, SEP2 and SEP3 genes result in the replacement of the stamens and petals by sepals and of the carpels by a new mutant flower with sepaloid organs. {ECO:0000269|PubMed:9418042}. Flower meristems behave like inflorescence meristems and continuously elaborate new meristems resulting in the cauliflower phenotype. Eventually flowers resembling those of ap1 single mutants eventually appear and set seeds.,Non-described subtle phenotype.,Early flower mutant phenotypes are lessened in later-arising flowers which appear more normal whilst still displaying significant perturbations of organ development.,Gynoecium often supported by an elongated gynophore.,Many flowers display a loss of fourth whorl determinancy.,Profound changes in early arising flowers. Both organ numbers and organ identity are affected in a highly variable manner.,Stellate trichomes are frequently observed on carpels (never on wild-type).,Adaxial epidermal cells have a slightly irregular edge indicating a partial adoption of leaf fate.,All flower organs resemble sepals. The second whorl has four green sepal-like organs (instead of four white petals) which are differentiated of interspersed stomata and the conversion of nearly all of the cells into sepal cells. Sepals replace stamens in the third whorl. The fourth whorl is a reiteration of whorls 1 2 and 3.,All flower organs are converted to leaf-like organs most strikingly on their adaxial surface. Abaxial epidermal cells are made up of a mixture of leaf- and sepal-like characteristics. Leaf characteristics include an abundance of branched trichomes.,Normal flowers apart from a reduction in the number of stamens.,Adaxial surface of first whorl organs are unaffected. FUNCTION: Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.,FUNCTION: Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. 28657,28578,29914,23564 Developmental protein SEPALLATA 1 (Agamous-like MADS-box protein AGL2),Developmental protein SEPALLATA 2 (Agamous-like MADS-box protein AGL4),K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; flower development [GO:0009908]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell differentiation [GO:0030154]; plant ovule development [GO:0048481]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; flower development [GO:0009908]; plant ovule development [GO:0048481]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed early during flower development. TISSUE SPECIFICITY: Expressed mainly in carpels, and weakly in stamens. locus:2076522;,locus:2143261; AT5G15800,AT3G02310 MADS-box protein NA NA NA NA NA NA NA ENOG411DTBK AIR3,SBT5.4 Q9ZSP5,F4JXC5 AIR3_ARATH,SBT54_ARATH Subtilisin-like protease SBT5.3 (EC 3.4.21.-) (Auxin-induced in root cultures protein 3) (Subtilase subfamily 5 member 3) (AtSBT5.3) (Subtilisin-like protease AIR3),Subtilisin-like protease SBT5.4 (EC 3.4.21.-) (Subtilase subfamily 5 member 4) (AtSBT5.4) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19588163}. FUNCTION: Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. May play a role in the degradation of structural proteins in the extracellular matrix of cells located above sites of lateral root formation and thus facilitate lateral root emergence (By similarity). {ECO:0000250}.,FUNCTION: Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position (By similarity). Interferes with CLAVATA 3 (CLV3) signaling, but does not cleave CLV3. {ECO:0000250, ECO:0000269|PubMed:19588163}. MISCELLANEOUS: Plants over-expressing SBT5.4 show a clavata-like phenotype with fasciated inflorescence stems and compounded terminal buds. This phenotype is abolished by mutating Ser-567 to Ala which completely disrupts the catalytic center of the protease (PubMed:19588163). {ECO:0000305|PubMed:19588163}. ARA:AT2G04160-MONOMER; 3.4.21.- 82874,83456 Subtilisin-like protease SBT5.3 (EC 3.4.21.-) (Auxin-induced in root cultures protein 3) (Subtilase subfamily 5 member 3) (AtSBT5.3) (Subtilisin-like protease AIR3),Subtilisin-like protease SBT5.4 (EC 3.4.21.-) (Subtilase subfamily 5 member 4) (AtSBT5.4) cell wall [GO:0005618]; extracellular region [GO:0005576]; serine-type endopeptidase activity [GO:0004252]; lateral root morphogenesis [GO:0010102]; response to auxin [GO:0009733],endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; serine-type endopeptidase activity [GO:0004252]; maintenance of meristem identity [GO:0010074]; regulation of growth [GO:0040008] DEVELOPMENTAL STAGE: Expressed during auxin-induced lateral root formation. {ECO:0000269|PubMed:10080694}. TISSUE SPECIFICITY: Expressed specifically at sites of lateral root emergence. {ECO:0000269|PubMed:10231025}.,TISSUE SPECIFICITY: Expressed in the vasculature of roots and leaves, stomata, sepals, stigma, anthers and siliques. {ECO:0000269|PubMed:19588163}. locus:2050215;,locus:2168057; AT2G04160,AT5G59810 subtilisin-like Os06g0609400 protein (Fragment),Os09g0479900 protein,Os02g0198700 protein (Putative subtilisin-like proteinase AIR3),Os02g0198700 protein,Os06g0609301 protein Q0DB15,B9G469,Q6H733,A0A0P0VG35,A0A0P0WYZ7 Q0DB15_ORYSJ,B9G469_ORYSJ,Q6H733_ORYSJ,A0A0P0VG35_ORYSJ,A0A0P0WYZ7_ORYSJ Os06g0609400 Os06g0609400 OSNPB_060609400,Os09g0479900 OsJ_29768 OSNPB_090479900,P0026H03.20-1 Os02g0198700 OSNPB_020198700,Os02g0198700 OSNPB_020198700,Os06g0609301 OSNPB_060609301 ENOG411DTBH JMJ32 Q0WVR4,A0A1I9LMI3 Q0WVR4_ARATH,A0A1I9LMI3_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Phospholipase-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 39123,38941 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Phospholipase-like protein),2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein locus:2077172; AT3G45880 JmjC domain-containing protein Os09g0483600 protein (cDNA clone:J033060L03, full insert sequence) Q0J0T9 Q0J0T9_ORYSJ Os09g0483600 Os09g0483600 OSNPB_090483600 ENOG411E6KT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0422700 protein A0A0N7KJ22 A0A0N7KJ22_ORYSJ Os04g0422700 OSNPB_040422700 ENOG411E6KU Q9LV66 Y5848_ARATH Uncharacterized protein At5g48480 17557 Uncharacterized protein At5g48480 cytosol [GO:0005829] locus:2165996; AT5G48480 NA NA NA NA NA NA NA NA ENOG411E6KX PRA1D P93829 PRA1D_ARATH PRA1 family protein D (AtPRA1.D) (CAMV MOVEMENT PROTEIN-INTERACTING PROTEIN 7) (Prenylated Rab acceptor 5) FUNCTION: May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}. 19325 PRA1 family protein D (AtPRA1.D) (CAMV MOVEMENT PROTEIN-INTERACTING PROTEIN 7) (Prenylated Rab acceptor 5) cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; transport of virus in multicellular host [GO:0046739]; vesicle-mediated transport [GO:0016192] TISSUE SPECIFICITY: Expressed in hypocotyls, roots, lateral roots, lateral root caps, columella cells, leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:11725951, ECO:0000269|PubMed:18583532}. locus:2018359; AT1G04260 PRA1 family NA NA NA NA NA NA NA ENOG411E6KY O64621 O64621_ARATH Expressed protein (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At2g18910) (Uncharacterized protein F19F24.11; At2g18910) 14339 Expressed protein (Hydroxyproline-rich glycoprotein family protein) (Uncharacterized protein At2g18910) (Uncharacterized protein F19F24.11; At2g18910) locus:2044490; AT2G18910 wiskott-Aldrich syndrome protein family member 2 Os02g0461900 protein (cDNA clone:001-134-A03, full insert sequence),Hydroxyproline-rich glycoprotein-like (Os02g0461900 protein) (cDNA clone:001-121-E11, full insert sequence) (cDNA clone:J023131E20, full insert sequence) B7F4V6,Q6K6F2 B7F4V6_ORYSJ,Q6K6F2_ORYSJ Os02g0461900 OSNPB_020461900,P0644G05.32-1 Os02g0461900 OsJ_06639 OSNPB_020461900 ENOG411E6KZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Conserved gene of NA NA NA NA NA NA NA ENOG411E2HB Q9ZPY4,A0A1P8B1K1,F4IJ67 Q9ZPY4_ARATH,A0A1P8B1K1_ARATH,F4IJ67_ARATH Expressed protein (Transmembrane protein),Transmembrane protein 44408,37126,28807 Expressed protein (Transmembrane protein),Transmembrane protein integral component of membrane [GO:0016021] locus:2040003; AT2G46550 NA Os08g0400300 protein (cDNA clone:J013109M02, full insert sequence),Os09g0363500 protein (cDNA clone:J013002O19, full insert sequence) Q6Z2A0,Q6K4E1 Q6Z2A0_ORYSJ,Q6K4E1_ORYSJ Os08g0400300 Os08g0400300 OJ1051_A08.24 OsJ_27219 OSJNBa0086F04.3 OSNPB_080400300,Os09g0363500 OJ1001_G09.8 OJ1506_A04.22 OsJ_29074 OSNPB_090363500 ENOG411EJRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Nup85 Nucleoporin NA NA NA NA NA NA NA ENOG411EJRX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rix1 complex component involved in 60S ribosome maturation NA NA NA NA NA NA NA ENOG411E40S TIM22-1,TIM22-4,MEE67 A2RVP7,A1XJK0,A0A1I9LRE5,A0A1I9LRE4 TI221_ARATH,TI224_ARATH,A0A1I9LRE5_ARATH,A0A1I9LRE4_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1 (Protein MATERNAL EFFECT EMBRYO ARREST 67),Mitochondrial import inner membrane translocase subunit TIM22-4,Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein DISRUPTION PHENOTYPE: Embryo lethality. {ECO:0000269|PubMed:15634699}. FUNCTION: Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. {ECO:0000269|PubMed:17098851}.,FUNCTION: Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. {ECO:0000250}. 18183,15097,15129,16821 Mitochondrial import inner membrane translocase subunit TIM22-1 (Protein MATERNAL EFFECT EMBRYO ARREST 67),Mitochondrial import inner membrane translocase subunit TIM22-4,Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; protein channel activity [GO:0015266]; embryo development ending in seed dormancy [GO:0009793]; protein localization to organelle [GO:0033365],integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; protein channel activity [GO:0015266]; protein localization to organelle [GO:0033365],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in young cotyledons, roots, flowers and leaves. {ECO:0000269|PubMed:12692332, ECO:0000269|PubMed:14730085}. locus:2100088;,locus:2014139; AT3G10110,AT1G18320 Mitochondrial import inner membrane translocase subunit Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed (Os03g0296300 protein) (cDNA clone:J013152C17, full insert sequence) Q10MT3 Q10MT3_ORYSJ Os03g0296300 LOC_Os03g18500 OsJ_10486 OSNPB_030296300 ENOG411E40R SAUR53,SAUR52 Q9FXI2,F4HZ54 Q9FXI2_ARATH,F4HZ54_ARATH F6F9.11 protein (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family 17138,17676 F6F9.11 protein (SAUR-like auxin-responsive protein family),SAUR-like auxin-responsive protein family response to auxin [GO:0009733] locus:2035444;,locus:2005694; AT1G19840,AT1G75590 auxin-induced protein NA NA NA NA NA NA NA ENOG411E40Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA nuclear transport factor Nuclear transport factor 2 (NTF-2) Q9XJ54 NTF2_ORYSJ NTF2 Os08g0532300 LOC_Os08g42000 OsJ_28061 P0702E04.18 FUNCTION: Facilitates protein transport into the nucleus. Could be part of a multicomponent system of cytosolic factors that assemble at the pore complex during nuclear import (By similarity). {ECO:0000250}. ENOG411E40P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cyclin-dependent kinase inhibitor Cyclin-dependent kinase inhibitor 1 (KIP-related protein 1) Q6Z6G5 KRP1_ORYSJ KRP1 Os02g0762400 LOC_Os02g52480 OsJ_008194 P0486G03.18 FUNCTION: Regulates the production of endosperm cells, affecting seed filling and embryo development. Regulates endoreduplication of endosperm cells. May play a role in the exit from the mitotic cell cycle during rice grain formation. Inhibitis leaf elongation rates by decreasing cell number, that is partly compensated by increased cell size. May not affect growth rate or cell size of the primary root. {ECO:0000269|PubMed:17012406}. MISCELLANEOUS: Plants overexpressing KRP1 show a reduction in the filling rate of about 2/3, and no embryo is observed in the empty seeds or seeds containing underdeveloped endosperm. ENOG411E40W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E40U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pathogenesis-related genes transcriptional activator NA NA NA NA NA NA NA ENOG411E40T Q8LC12 Q8LC12_ARATH At4g01897 (Dihydroorotate dehydrogenase) 14158 At4g01897 (Dihydroorotate dehydrogenase) cytosol [GO:0005829] locus:1005716189; AT4G01897 Protein of unknown function (DUF952) Os03g0564200 protein (Fragment) Q0DQS8 Q0DQS8_ORYSJ Os03g0564200 Os03g0564200 OSNPB_030564200 ENOG411E40Z SPT Q9FUA4 SPT_ARATH Transcription factor SPATULA (Basic helix-loop-helix protein 24) (AtbHLH24) (bHLH 24) (Transcription factor EN 99) (bHLH transcription factor bHLH024) Reduced seed dormancy. Germination occurs in the light and in the absence of cold treatment. Abnormal carpel development-D. Smyth-2001 FUNCTION: Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. 40298 Transcription factor SPATULA (Basic helix-loop-helix protein 24) (AtbHLH24) (bHLH 24) (Transcription factor EN 99) (bHLH transcription factor bHLH024) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein dimerization activity [GO:0046983]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; carpel development [GO:0048440]; circadian rhythm [GO:0007623]; fruit development [GO:0010154]; negative regulation of seed germination [GO:0010187]; response to cold [GO:0009409]; response to red light [GO:0010114]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During flower initiation, expressed in the peripheral zone of the shoot apical meristem. Confined to the anlagen of successive flower buds yet to arise. Later expressed in abaxial and adaxial sepal primordia, but not in sepals. When sepals initiate, localized in the region interior to them. Within the gynoecium, detected in the initiating and developing medial regions, and then in the developing septum and stigma. SPT expression also occurs in sub-regions of developing ovules, and in the wall and dehiscence zone of the maturing fruit. As the petals develop, becomes restricted to the adaxial epidermis. In stamen expression increase in the vicinity of the archesporial cells and in cells undergoing divisions to produce sporogenous and secondary parietal cells of the anther locules. Expressed in the tapetum and microspore mother cells until the initiation of meiosis. Also detected in stomium and filaments. {ECO:0000269|PubMed:11245574}. TISSUE SPECIFICITY: Expressed in lateral root caps, young leaves, stipules, maturing pith cells of the stem, differentiating vascular cells, shoot apical meristems and flowers. {ECO:0000269|PubMed:11245574}. locus:2115080; AT4G36930 Transcription factor Os06g0164400 protein A0A0P0WTF9 A0A0P0WTF9_ORYSJ Os06g0164400 OSNPB_060164400 ENOG411E40Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF581) Os07g0615500 protein (cDNA clone:002-140-D09, full insert sequence),Os01g0637666 protein (Fragment) Q8GRH4,A0A0P0V5P3 Q8GRH4_ORYSJ,A0A0P0V5P3_ORYSJ P0616D06.128 B1056G08.101 Os07g0615500 OSNPB_070615500,Os01g0637666 OSNPB_010637666 ENOG411E40X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 Os02g0558700 protein A0A0P0VKG0 A0A0P0VKG0_ORYSJ Os02g0558700 OSNPB_020558700 ENOG411E40C rpl14 P56792 RK14_ARATH 50S ribosomal protein L14, chloroplastic FUNCTION: Binds to 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_01367}. 13582 50S ribosomal protein L14, chloroplastic chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; mitochondrial large ribosomal subunit [GO:0005762]; large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735]; response to cytokinin [GO:0009735]; translation [GO:0006412] locus:504954701; ATCG00780 ribosomal protein L14 50S ribosomal protein L14, chloroplastic P0C440 RK14_ORYSJ rpl14 LOC_Osp1g00710 FUNCTION: Binds to 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_01367}. ENOG411E40G Q94EJ3 Q94EJ3_ARATH AT1g27100/T7N9_16 (Pollen Ole e 1 allergen and extensin family protein) (Uncharacterized protein At5g54855/MBG8.13) 16148 AT1g27100/T7N9_16 (Pollen Ole e 1 allergen and extensin family protein) (Uncharacterized protein At5g54855/MBG8.13) locus:505006692; AT5G54855 pollen Ole e 1 allergen and extensin family protein Os02g0317800 protein (Pollen Ole e 1 allergen and extensin family protein-like) (cDNA, clone: J100056L07, full insert sequence) Q6Z841 Q6Z841_ORYSJ Os02g0317800 Os02g0317800 OJ1134_B09.7 OsJ_06454 OSNPB_020317800 P0572D06.41 ENOG411E40K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os05g0101300 protein A0A0P0WH36 A0A0P0WH36_ORYSJ Os05g0101300 OSNPB_050101300 ENOG411E40M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E403 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os06g0236300 protein (cDNA clone:002-184-C09, full insert sequence),Os03g0246150 protein Q67V82,B9F6R6 Q67V82_ORYSJ,B9F6R6_ORYSJ Os06g0236300 OSJNBa0080E19.35 OSNPB_060236300,Os03g0246150 OsJ_10124 OSNPB_030246150 ENOG411E401 WCRKC2 Q8VZT6 TRL32_ARATH Thioredoxin-like 3-2, chloroplastic (Thioredoxin WCRKC-2) FUNCTION: Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. 21836 Thioredoxin-like 3-2, chloroplastic (Thioredoxin WCRKC-2) chloroplast stroma [GO:0009570]; oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [GO:0016671]; protein disulfide oxidoreductase activity [GO:0015035]; protein-disulfide reductase activity [GO:0047134]; thioredoxin-disulfide reductase activity [GO:0004791]; cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; glycerol ether metabolic process [GO:0006662] locus:2146693; AT5G04260 Thioredoxin-like 3-2 Os02g0819200 protein (Putative Thioredoxin H-type) (cDNA clone:J033097K15, full insert sequence) Q6K9R2 Q6K9R2_ORYSJ Os02g0819200 Os02g0819200 OJ1202_E07.18 OSNPB_020819200 ENOG411E400 NUDT1 Q9CA40 NUDT1_ARATH Nudix hydrolase 1 (AtNUDT1) (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTP diphosphatase) (8-oxo-dGTPase) (EC 3.6.1.55) (Dihydroneopterin triphosphate diphosphatase) (EC 3.6.1.67) (Dihydroneopterin triphosphate pyrophosphohydrolase) (DHNTP pyrophosphohydrolase) (NADH pyrophosphatase) (EC 3.6.1.22) DISRUPTION PHENOTYPE: Increased level of 8-oxo-G in genomic DNA. {ECO:0000269|PubMed:17804481}. FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Its substrate specificity is unclear. In vitro, it can use NTP, dNTP, 8-oxo-GTP, 8-oxo-dGTP, dGTP, dATP, dTTP or dihydroneopterin triphosphate (DHNTP) as substrate. Has some NADH pyrophosphatase activity in vitro; however, such activity may not be relevant in vivo due to the high concentration of manganese used during the experiments. Plays an important role in protection against oxidative DNA and RNA damage by removing oxidatively damaged form of guanine. {ECO:0000269|PubMed:15611104, ECO:0000269|PubMed:15878881, ECO:0000269|PubMed:17804481}. MISCELLANEOUS: Has the ability to complement a mutation of mutT in E.coli and thereby completely suppress the increased frequency of spontaneous mutations. ARA:AT1G68760-MONOMER;MetaCyc:AT1G68760-MONOMER; R-ATH-2393930; 3.6.1.B15; 3.6.1.55; 3.6.1.67; 3.6.1.22 16357 Nudix hydrolase 1 (AtNUDT1) (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTP diphosphatase) (8-oxo-dGTPase) (EC 3.6.1.55) (Dihydroneopterin triphosphate diphosphatase) (EC 3.6.1.67) (Dihydroneopterin triphosphate pyrophosphohydrolase) (DHNTP pyrophosphohydrolase) (NADH pyrophosphatase) (EC 3.6.1.22) cytosol [GO:0005829]; 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity [GO:0035539]; 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [GO:0008413]; dihydroneopterin triphosphate pyrophosphohydrolase activity [GO:0019177]; metal ion binding [GO:0046872]; NAD+ diphosphatase activity [GO:0000210]; cellular response to DNA damage stimulus [GO:0006974]; dGTP catabolic process [GO:0006203] TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:15878881}. locus:2012443; AT1G68760 Nudix hydrolase NA NA NA NA NA NA NA ENOG411E3SF FLA20 Q9FGW0 FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 FUNCTION: May be a cell surface adhesion protein. 46601 Putative fasciclin-like arabinogalactan protein 20 integral component of membrane [GO:0016021] locus:2167742; AT5G40940 fasciclin-like arabinogalactan protein NA NA NA NA NA NA NA ENOG411DTVJ Q9C939 Q9C939_ARATH 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 32373-31266) ARA:GQT-221-MONOMER; 35704 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (Putative oxidoreductase; 32373-31266) metal ion binding [GO:0046872]; oxidoreductase activity [GO:0016491] locus:2011576; AT1G52790 2OG-Fe(II) oxygenase superfamily NA NA NA NA NA NA NA ENOG411DTVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENT Os08g0510500 protein (cDNA clone:J023064G17, full insert sequence) (cDNA clone:J023084F16, full insert sequence) Q7EXY9 Q7EXY9_ORYSJ Os08g0510500 Os08g0510500 OSJNBa0016N23.123 OSNPB_080510500 ENOG411DTVN O64876,A0A1P8AZF7,A0A1P8AZG9 O64876_ARATH,A0A1P8AZF7_ARATH,A0A1P8AZG9_ARATH Expressed protein (Protein N-terminal asparagine amidohydrolase family protein) (Uncharacterized protein At2g44420),Protein N-terminal asparagine amidohydrolase family protein 39174,42666,37588 Expressed protein (Protein N-terminal asparagine amidohydrolase family protein) (Uncharacterized protein At2g44420),Protein N-terminal asparagine amidohydrolase family protein protein-N-terminal asparagine amidohydrolase activity [GO:0008418] locus:2050549; AT2G44420 protein N-terminal asparagine Os06g0618150 protein A0A0P0WYR6 A0A0P0WYR6_ORYSJ Os06g0618150 OSNPB_060618150 ENOG411DTVB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zn-finger in Ran binding protein and others NA NA NA NA NA NA NA ENOG411DTVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Exostosin family Os03g0144500 protein (Fragment) Q0DV80 Q0DV80_ORYSJ Os03g0144500 Os03g0144500 OSNPB_030144500 ENOG411DTVA Q2V3R1 FB346_ARATH F-box protein At3g44326 40752 F-box protein At3g44326 locus:1009023263; AT3G44326 F-box domain containing protein Os12g0156500 protein,Os11g0155100 protein (Fragment) A0A0P0Y760,A0A0P0XZ92 A0A0P0Y760_ORYSJ,A0A0P0XZ92_ORYSJ Os12g0156500 OSNPB_120156500,Os11g0155100 OSNPB_110155100 ENOG411DTVG ATI1,ATI2 O82775,Q8VY98 ATI1_ARATH,ATI2_ARATH ATG8-interacting protein 1,ATG8-interacting protein 2 FUNCTION: Involved in a special stress-induced plastid-to-vacuole protein trafficking pathway. Interacts with ATG8F in plastid bodies to subsequently enable their delivery to the vacuole by an autophagic pathway. Interacts with the plastid proteins APE1 and PSBS/NPQ4 and may recruit them as cargo into plastid bodies that may be recognized by the autophagy machinery for degradation in the vacuole. Involved in the alleviation of damage caused by salt stress during plant development, probably through its involvement in plastid-to-vacuole and ER-to-vacuole trafficking (PubMed:25281689). Plays a role in seed germination in response to exogenous abscisic acid (ABA) treatment (PubMed:22253227). {ECO:0000269|PubMed:22253227, ECO:0000269|PubMed:25281689}.,FUNCTION: May be involved in salt stress-induced vesicle-to-vacuole trafficking pathway. Through its interaction with ATG8F, may enable delivery of the vesicle bodies to the vacuole by an autophagic pathway (Probable). Plays a role in seed germination in response to exogenous abscisic acid (ABA) treatment (PubMed:22253227). {ECO:0000269|PubMed:22253227, ECO:0000305|PubMed:25281689}. MISCELLANEOUS: Plants over-expressing ATI1 display increased ability of seed germination in presence of exogenous abscisic acid (ABA). Plants silencing ATI1 and ATI2 display decreased ability of seed germination in presence of exogenous ABA. {ECO:0000269|PubMed:22253227}.,MISCELLANEOUS: Plants silencing ATI1 and ATI2 display decreased ability of seed germination in presence of exogenous abscisic acid (ABA). {ECO:0000269|PubMed:22253227}. 28844,29224 ATG8-interacting protein 1,ATG8-interacting protein 2 chloroplast membrane [GO:0031969]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; plastid to vacuole vesicle-mediated transport [GO:1904962]; protein targeting to vacuole involved in autophagy [GO:0071211],endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; autophagy [GO:0006914]; protein transport [GO:0015031] locus:2062922;,locus:505006416; AT2G45980,AT4G00355 Inherit from KOG: Mate efflux family protein OSJNBa0019G23.5 protein (Os04g0165300 protein) (cDNA clone:006-307-G01, full insert sequence) (cDNA clone:J013099G21, full insert sequence) Q7XS62 Q7XS62_ORYSJ Os04g0165300 Os04g0165300 OSJNBa0019G23.5 OSNPB_040165300 ENOG411DTVZ SPPL3,SPPL5 Q4V3B8,Q9MA44,B3H5D5,A0A1P8AWA1,A0A1P8B2Y7,A0A1P8B2Y2,A0A1P8AWF6,A0A1P8B2Y1 SIPL3_ARATH,SIPL5_ARATH,B3H5D5_ARATH,A0A1P8AWA1_ARATH,A0A1P8B2Y7_ARATH,A0A1P8B2Y2_ARATH,A0A1P8AWF6_ARATH,A0A1P8B2Y1_ARATH Signal peptide peptidase-like 3 (AtSPPL3) (EC 3.4.23.-),Signal peptide peptidase-like 5 (AtSPPL5) (EC 3.4.23.-),SIGNAL PEPTIDE PEPTIDASE-LIKE 5,SIGNAL PEPTIDE PEPTIDASE-LIKE 3 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. {ECO:0000250}. 3.4.23.- 59224,58728,55568,46178,66949,59983,44008,66190 Signal peptide peptidase-like 3 (AtSPPL3) (EC 3.4.23.-),Signal peptide peptidase-like 5 (AtSPPL5) (EC 3.4.23.-),SIGNAL PEPTIDE PEPTIDASE-LIKE 5,SIGNAL PEPTIDE PEPTIDASE-LIKE 3 endosome [GO:0005768]; endosome membrane [GO:0010008]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; vacuolar membrane [GO:0005774]; aspartic-type endopeptidase activity [GO:0004190],endosome membrane [GO:0010008]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; aspartic-type endopeptidase activity [GO:0004190],integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190] DEVELOPMENTAL STAGE: Expressed in the shoot meristem and root epidermal cells in germinating seeds. {ECO:0000269|PubMed:18067581}. TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18067581}. locus:2040971;,locus:2198733; AT2G43070,AT1G05820 signal peptide peptidase-like Signal peptide peptidase-like 2 (OsSPPL2) (EC 3.4.23.-),Os11g0433200 protein (Fragment),Os11g0433200 protein Q53P98,A0A0P0Y1V0,A0A0P0Y1S4 SIPL2_ORYSJ,A0A0P0Y1V0_ORYSJ,A0A0P0Y1S4_ORYSJ SPPL2 Os11g0433200 LOC_Os11g24540 OsJ_33780,Os11g0433200 OSNPB_110433200 FUNCTION: Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. {ECO:0000250}. ENOG411DTVX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF632) Os01g0960200 protein A0A0P0VD39 A0A0P0VD39_ORYSJ Os01g0960200 OSNPB_010960200 ENOG411DTVS AGD14,ZIGA4 Q8RXE7,A0A1P8ANR5,F4HXP0 AGD14_ARATH,A0A1P8ANR5_ARATH,F4HXP0_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 (ARF GAP AGD14) (Protein ARF-GAP DOMAIN 14) (AtAGD14) (Protein ZIGA4),ARF GAP-like zinc finger-containing protein ZIGA4 FUNCTION: GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). {ECO:0000250}. R-ATH-8856825; 71344,64507,71560 Probable ADP-ribosylation factor GTPase-activating protein AGD14 (ARF GAP AGD14) (Protein ARF-GAP DOMAIN 14) (AtAGD14) (Protein ZIGA4),ARF GAP-like zinc finger-containing protein ZIGA4 GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872],plasma membrane [GO:0005886]; GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; protein autophosphorylation [GO:0046777] locus:2025575; AT1G08680 ADP-ribosylation factor GTPase-activating protein Os01g0813900 protein (ZIGA1 protein-like),Os03g0323500 protein Q5N770,Q0DSA0 Q5N770_ORYSJ,Q0DSA0_ORYSJ Os01g0813900 OsJ_03848 OSJNBa0085D07.17 OSNPB_010813900,Os03g0323500 Os03g0323500 OSNPB_030323500 ENOG411DTVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA two-component response regulator Two-component response regulator ORR23 (OsRRB5),Two-component response regulator ORR22 (OsRRB4),Two-component response regulator ORR24 (OsRRB2) Q6K8X6,Q5SML5,Q6H805 ORR23_ORYSJ,ORR22_ORYSJ,ORR24_ORYSJ RR23 ORR3 Os02g0796500 LOC_Os02g55320 OJ1004_E04.14 OJ1695_H09.29 OsJ_08721,RR22 ORR2 Os06g0183100 LOC_Os06g08440 OsJ_20357 OSJNBb0036B04.15,RR24 ORR4 Os02g0182100 LOC_Os02g08500 OJ1297_C09.26 OsJ_05635 DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering, lesion mimic, late heading and low fertility phenotypes. {ECO:0000269|PubMed:16891544}.,DISRUPTION PHENOTYPE: Dwarf, narrow leaf, lesion mimic, low tillering, late heading and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.,FUNCTION: Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. ENOG411DTVU TT16 Q8RYD9,F4KCU5,A0A1P8BAR2 TT16_ARATH,F4KCU5_ARATH,A0A1P8BAR2_ARATH Protein TRANSPARENT TESTA 16 (Arabidopsis BSISTER MADS-box protein),K-box region and MADS-box transcription factor family protein Altered seed pigmentation pattern due to a lack of proanthocyanidin (PA) accumulation in the endothelium. The inner cell layer of the inner integument showed an abnormal cell shape. The endothelial layer may be absent or the identity of this cell layer is changed. Abnormal seed coat coloration; Large seeds-L. Lepiniec-2002 FUNCTION: Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation (PubMed:12368498, PubMed:16080001). Necessary for the normal activation of the BANYULS promoter in the endothelium body (PubMed:12368498). Is required, together with AGL11/STK for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). Interacts genetically with AGL1/SHP1 and AGL5/SHP2 in a partially antagonistic manner and represses AGL1/SHP1, AGL5/SHP2, and AGL8/FUL during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). Mediates the crosstalk between endothelium and nucellus to ensure proper seed formation. Functions redundantly with AGL63/GOA to repress nucellus growth and promote its degeneration. Represses the negative regulator of autophagy and programmed cell death HVA22D in the proximal nucellus (PubMed:27233529). Binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:16080001). {ECO:0000269|PubMed:12368498, ECO:0000269|PubMed:16080001, ECO:0000269|PubMed:22176531, ECO:0000269|PubMed:27233529, ECO:0000269|PubMed:27776173}. MISCELLANEOUS: The two isoforms were always coexpressed in the tissues investigated. The pigmentation of the chalaza-micropyle region is not under the control of ABS, as opposed to the pigmentation of the seed body. 29698,27985,31636 Protein TRANSPARENT TESTA 16 (Arabidopsis BSISTER MADS-box protein),K-box region and MADS-box transcription factor family protein nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; plant ovule development [GO:0048481]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; regulation of cell shape [GO:0008360]; regulation of double fertilization forming a zygote and endosperm [GO:0080155]; regulation of proanthocyanidin biosynthetic process [GO:2000029]; seed development [GO:0048316]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed during seed development. TISSUE SPECIFICITY: Expressed in buds, flowers and immature seeds, but not in roots, stems, leaves, seedlings or siliques valves. Expression in seed coat is confined to the endothelium layer. locus:2166766; AT5G23260 Transcription factor MADS-box transcription factor 29 (OsMADS29) Q6H711 MAD29_ORYSJ MADS29 Os02g0170300 LOC_Os02g07430 OJ1116_A06.26 OsJ_05554 P0030G02.16 FUNCTION: Probable transcription factor. ENOG411E3SW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411EK3C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_ZZ Calcium-binding EF hand family protein, putative, expressed (Os03g0263900 protein) Q10NP2 Q10NP2_ORYSJ LOC_Os03g15740 Os03g0263900 OSNPB_030263900 ENOG411E3SP F24M12.50 Q9SD44 Q9SD44_ARATH At3g51010 (Protein translocase subunit) (Uncharacterized protein F24M12.50) 21528 At3g51010 (Protein translocase subunit) (Uncharacterized protein F24M12.50) mitochondrion [GO:0005739]; plastid [GO:0009536] locus:2080948; AT3G51010 NA Os05g0126200 protein (cDNA clone:001-029-G06, full insert sequence) Q75IM4 Q75IM4_ORYSJ Os05g0126200 OsJ_16972 OSJNBb0079L11.12 OSNPB_050126200 P0683F12.6 ENOG411DWW6 CYP82G1 Q9LSF8 C82G1_ARATH Cytochrome P450 82G1 (EC 1.14.-.-) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but loss of TMTT production after alamethicin elicitation. {ECO:0000269|PubMed:21088219}. FUNCTION: Catalyzes the conversion of the C20 (E,E)-geranyllinalool to the volatile C16-homoterpene 4,8,12-trimethyltrideca-1,3,7,11-tetraene (TMTT) that is produced upon insect herbivore attack. Catalyzes the conversion of the C15 (E)-nerolidol to the volatile C11-homoterpene (E)-4,8-dimethyl-1,3,7-nonatriene (DMNT). {ECO:0000269|PubMed:21088219}. PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT3G25180-MONOMER;MetaCyc:AT3G25180-MONOMER; 1.14.13.B14; 1.14.-.- 58570 Cytochrome P450 82G1 (EC 1.14.-.-) integral component of membrane [GO:0016021]; membrane [GO:0016020]; (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity [GO:0097008]; 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity [GO:0097007]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; defense response [GO:0006952]; secondary metabolite biosynthetic process [GO:0044550]; terpene biosynthetic process [GO:0046246]; terpenoid biosynthetic process [GO:0016114] TISSUE SPECIFICITY: Expressed in stems, flower peduncles, receptacle of developing and mature flowers and in stigma of mature opening flower buds. {ECO:0000269|PubMed:21088219}. locus:2090275; AT3G25180 cytochrome P450 NA NA NA NA NA NA NA ENOG411DWW7 MCM10 Q5XVE2 Q5XVE2_ARATH Minichromosome maintenance 10 R-ATH-68962; 43711 Minichromosome maintenance 10 replication fork protection complex [GO:0031298]; DNA replication origin binding [GO:0003688]; single-stranded DNA binding [GO:0003697]; DNA replication initiation [GO:0006270] locus:2047067; AT2G20980 Minichromosome maintenance protein 10 Os09g0539400 protein A0A0P0XQP4 A0A0P0XQP4_ORYSJ Os09g0539400 OSNPB_090539400 ENOG411DWW4 ARP2 Q9LSD6 ARP2_ARATH Actin-related protein 2 (Protein WURM) DISRUPTION PHENOTYPE: Distorted trichomes and altered epidermal cell types. {ECO:0000269|PubMed:12837952, ECO:0000269|PubMed:12906796, ECO:0000269|PubMed:12913159}. alterations in F-actin organization in expanding trichomes Distorted trichomes; Abnormal pavement and hypocotyl cell morphology; Abnormal root hairs; Complete loss of stomata on hypocotyl-M. Hulskamp-2003 FUNCTION: Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament (By similarity). Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. Involved in the control of cell morphogenesis in leaf epidermal pavement cells, root hairs, hypocotyls epidermal cells and trichomes, especially during rapid cell expansion. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles. {ECO:0000250, ECO:0000269|PubMed:10572033, ECO:0000269|PubMed:12690443, ECO:0000269|PubMed:12837952, ECO:0000269|PubMed:12906796, ECO:0000269|PubMed:12913159}. MISCELLANEOUS: 'Wurm' means 'worm' in German. Plants impaired in WURM display worm-shaped trichomes. R-ATH-2029482;R-ATH-5663213;R-ATH-6798695; 44356 Actin-related protein 2 (Protein WURM) Arp2/3 protein complex [GO:0005885]; cytoplasm [GO:0005737]; actin binding [GO:0003779]; ATP binding [GO:0005524]; actin cytoskeleton organization [GO:0030036]; actin filament organization [GO:0007015]; actin filament-based process [GO:0030029]; Arp2/3 complex-mediated actin nucleation [GO:0034314]; cell morphogenesis [GO:0000902]; multicellular organism development [GO:0007275]; multidimensional cell growth [GO:0009825]; trichome morphogenesis [GO:0010090] TISSUE SPECIFICITY: Expressed at low levels in roots, seedlings, stems, leaves, flowers, pollen, siliques and at a higher level in inflorescences. Specifically localized in cells adjacent to mature xylem and in developing xylem vessels. {ECO:0000269|PubMed:10561069, ECO:0000269|PubMed:11891255, ECO:0000269|PubMed:12913159, ECO:0000269|PubMed:15086808}. locus:2092005; AT3G27000 Actin-related protein Actin-related protein 2,Os08g0369300 protein Q6Z256,A0A0P0XEX1 ARP2_ORYSJ,A0A0P0XEX1_ORYSJ ARP2 Os08g0369300 LOC_Os08g28190 OJ1770_H03.15 OsJ_026006 OSJNBa0091C18.37,Os08g0369300 OSNPB_080369300 FUNCTION: Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles (By similarity). {ECO:0000250}. ENOG411DWW5 VAL1,VAL3,VAL2 Q8W4L5,O65420,Q5CCK4,A0A1P8B7B2,A0A1P8B7B8 VAL1_ARATH,VAL3_ARATH,VAL2_ARATH,A0A1P8B7B2_ARATH,A0A1P8B7B8_ARATH B3 domain-containing transcription repressor VAL1 (Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2) (Protein VP1/ABI3-LIKE 1),B3 domain-containing transcription factor VAL3 (Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 2) (Protein VP1/ABI3-LIKE 3),B3 domain-containing transcription repressor VAL2 (Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 1) (Protein VP1/ABI3-LIKE 2),VP1/ABI3-like 3 DISRUPTION PHENOTYPE: Variegated leaves. {ECO:0000269|PubMed:17158584}. FUNCTION: Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.,FUNCTION: May be involved in plant development. {ECO:0000269|PubMed:17158584}.,FUNCTION: Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. 87002,79758,86012,59377,62307 B3 domain-containing transcription repressor VAL1 (Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2) (Protein VP1/ABI3-LIKE 1),B3 domain-containing transcription factor VAL3 (Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 2) (Protein VP1/ABI3-LIKE 3),B3 domain-containing transcription repressor VAL2 (Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 1) (Protein VP1/ABI3-LIKE 2),VP1/ABI3-like 3 mitochondrion [GO:0005739]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; negative regulation of transcription, DNA-templated [GO:0045892]; response to abscisic acid [GO:0009737]; response to sucrose [GO:0009744]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; leaf development [GO:0048366]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:15894743}. locus:2064417;,locus:2119652;,locus:2116592; AT2G30470,AT4G21550,AT4G32010 B3 domain-containing protein B3 domain-containing protein Os07g0563300,B3 domain-containing protein Os07g0679700 Q0D5G4,Q6Z3U3 Y7633_ORYSJ,Y7797_ORYSJ Os07g0563300 LOC_Os07g37610 OJ1720_F04.105,Os07g0679700 LOC_Os07g48200 OJ1205_F02.12 ENOG411DWW2 UBP27 Q9FPS0,F4JVD6 UBP27_ARATH,F4JVD6_ARATH Ubiquitin carboxyl-terminal hydrolase 27 (EC 3.4.19.12) (Deubiquitinating enzyme 27) (AtUBP27) (Ubiquitin thioesterase 27) (Ubiquitin-specific-processing protease 27),Ubiquitin-specific protease 27 FUNCTION: Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}. ARA:AT4G39370-MONOMER; R-ATH-5689880; 3.4.19.12 55771,57035 Ubiquitin carboxyl-terminal hydrolase 27 (EC 3.4.19.12) (Deubiquitinating enzyme 27) (AtUBP27) (Ubiquitin thioesterase 27) (Ubiquitin-specific-processing protease 27),Ubiquitin-specific protease 27 integral component of membrane [GO:0016021]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511],integral component of mitochondrial outer membrane [GO:0031307]; mitochondrial membrane [GO:0031966]; peptidase activity [GO:0008233]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] locus:2122447; AT4G39370 ubiquitin carboxyl-terminal hydrolase Os04g0429200 protein C7J0W5 C7J0W5_ORYSJ Os04g0429200 Os04g0429200 OSNPB_040429200 ENOG411DWW3 F4I906 F4I906_ARATH RNA-binding (RRM/RBD/RNP motifs) family protein 40204 RNA-binding (RRM/RBD/RNP motifs) family protein RNA binding [GO:0003723] locus:2007903; AT1G17640 RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Os02g0221500 protein (Putative heterogeneous nuclearribonucleoprotein A2),Os06g0566100 protein (Fragment) Q6YVH3,A0A0P0WY24 Q6YVH3_ORYSJ,A0A0P0WY24_ORYSJ P0758B01.1-1 B1131G07.23-1 Os02g0221500 OSNPB_020221500,Os06g0566100 OSNPB_060566100 ENOG411DWW0 NPF6.2,NPF6.3,AtNPF6.2 Q9SZY4,Q05085,A0A1P8AZ04,A0A1P8AZ62 PTR27_ARATH,PTR7_ARATH,A0A1P8AZ04_ARATH,A0A1P8AZ62_ARATH Protein NRT1/ PTR FAMILY 6.2 (AtNPF6.2) (Nitrate transporter 1.4),Protein NRT1/ PTR FAMILY 6.3 (AtNPF6.3) (Nitrate transporter 1.1) (AtNRT1) (Nitrate/chlorate transporter) (Protein CHLORINA 1),Major facilitator superfamily protein DISRUPTION PHENOTYPE: Wider leaves resulting from increased cell expansion. Lower nitrate content of the petiole and midrib. {ECO:0000269|PubMed:15509836}.,DISRUPTION PHENOTYPE: Altered development of nascent organs. Reduced stomatal opening and reduced transpiration rates in the light resulting in enhanced drought tolerance. Slower translocation of nitrate to the leaves. {ECO:0000269|PubMed:12509525, ECO:0000269|PubMed:15319483, ECO:0000269|PubMed:23645597}. Reduced nitrate uptake; Resistant to chlorate-N. Crawford-1993 FUNCTION: Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. {ECO:0000269|PubMed:15509836}.,FUNCTION: Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips. Acts as a bidirectional transporter involved in root-to-shoot nitrate translocation. Recognizes specifically nitrate and chlorate, but not nitrite, alanine, sulfate, phosphate or the di-peptide Ala-Ala. {ECO:0000269|PubMed:10330471, ECO:0000269|PubMed:12509525, ECO:0000269|PubMed:12606566, ECO:0000269|PubMed:15319483, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:19633234, ECO:0000269|PubMed:19766570, ECO:0000269|PubMed:20627075, ECO:0000269|PubMed:23645597, ECO:0000269|PubMed:8453665, ECO:0000269|PubMed:9844028}. MISCELLANEOUS: When mutated confers resistance to the herbicide chlorate.; MISCELLANEOUS: The kinase CIPK23 is a negative regulator of the high-affinity response, while the kinase CIPK8 is a positive regulator of the low-affinity response. Thr-101 is not the direct target of CIPK8. R-ATH-427975;R-ATH-6798695; 63572,64922,60126,58782 Protein NRT1/ PTR FAMILY 6.2 (AtNPF6.2) (Nitrate transporter 1.4),Protein NRT1/ PTR FAMILY 6.3 (AtNPF6.3) (Nitrate transporter 1.1) (AtNRT1) (Nitrate/chlorate transporter) (Protein CHLORINA 1),Major facilitator superfamily protein integral component of membrane [GO:0016021]; symporter activity [GO:0015293]; nitrate assimilation [GO:0042128]; oligopeptide transport [GO:0006857]; response to jasmonic acid [GO:0009753]; response to wounding [GO:0009611],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; nitrate transmembrane transporter activity [GO:0015112]; symporter activity [GO:0015293]; auxin-activated signaling pathway [GO:0009734]; nitrate assimilation [GO:0042128]; nitrate transport [GO:0015706]; oligopeptide transport [GO:0006857]; response to herbicide [GO:0009635]; response to nitrate [GO:0010167]; response to water deprivation [GO:0009414],integral component of membrane [GO:0016021]; transporter activity [GO:0005215]; oligopeptide transport [GO:0006857] DEVELOPMENTAL STAGE: Expressed in the columella root cap at day 1 after germination. At day 3, detected in the root meristematic region and at day 5, expressed throughout the root tip. {ECO:0000269|PubMed:11487691}. TISSUE SPECIFICITY: Expressed in shoots, leaves, flowers and siliques. Expressed in leaf petiole. {ECO:0000269|PubMed:15509836, ECO:0000269|PubMed:17481610}.,TISSUE SPECIFICITY: Expressed in the stele in lateral root primordia before emergence and in the tip of primary and emerged lateral roots. Detected in emerging and immature leaves, guard cells, flower buds, style, stigma, anthers and pollen grains. Not detected in the shoot apical meristem. {ECO:0000269|PubMed:11487691, ECO:0000269|PubMed:12509525, ECO:0000269|PubMed:17481610, ECO:0000269|PubMed:20627075}. locus:2043803;,locus:2008855; AT2G26690,AT1G12110 Nitrate transporter Nitrate/chlorate transporter, putative, expressed (Os10g0554200 protein) (cDNA clone:J013147D24, full insert sequence),Nitrate/chlorate transporter, putative, expressed (Os03g0103000 protein) (cDNA, clone: J065212G21, full insert sequence),Os08g0155400 protein (Fragment),Os10g0554200 protein (Fragment),Os01g0556700 protein (Fragment) Q336T8,Q10T28,Q0J7Y1,Q0IVT7,A0A0P0XBR9,A0A0P0XC27,A0A0N7KD56 Q336T8_ORYSJ,Q10T28_ORYSJ,Q0J7Y1_ORYSJ,Q0IVT7_ORYSJ,A0A0P0XBR9_ORYSJ,A0A0P0XC27_ORYSJ,A0A0N7KD56_ORYSJ Os10g0554200 LOC_Os10g40600 OSNPB_100554200,Os03g0103000 LOC_Os03g01290 OsJ_19340 OSNPB_030103000,Os08g0155400 Os08g0155400 OSNPB_080155400,Os10g0554200 OSNPB_100554200,Os08g0155400 OSNPB_080155400,Os01g0556700 OSNPB_010556700 ENOG411DWW1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os07g0496600 protein (Fragment) A0A0P0X6M9 A0A0P0X6M9_ORYSJ Os07g0496600 OSNPB_070496600 ENOG411DWW8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:Exonuc_X-T Os01g0280000 protein (Fragment),Os11g0525900 protein A0A0P0V1J1,A0A0P0V145,A0A0P0Y2S5 A0A0P0V1J1_ORYSJ,A0A0P0V145_ORYSJ,A0A0P0Y2S5_ORYSJ Os01g0280000 OSNPB_010280000,Os11g0525900 OSNPB_110525900 ENOG411DWW9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: SLT1 protein Os01g0840200 protein (Putative SLT1 protein) (Sodium/lithium tolerance protein) (cDNA clone:J023034F22, full insert sequence) Q943K6 Q943K6_ORYSJ Os01g0840200 Os01g0840200 OsJ_04025 OSNPB_010840200 P0031D11.42 P0408C03.17 ENOG411DWWF RAD51 P94102,A0A1P8BGT9 RAD51_ARATH,A0A1P8BGT9_ARATH DNA repair protein RAD51 homolog 1 (Rad51-like protein 1) (AtRAD51),RAS associated with diabetes protein 51 The chromosome fragmentation phenotype of the asy1/ Atrad51 double mutant is indistinguishable from that of the Atrad51 mutant.,Hypersensitivity to mitomycin C. Completely male and female sterile due to defects in meiosis-B. Reiss-2004 FUNCTION: Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA (By similarity). Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) generated by AtSPO11-1 and in homologous recombination. Its function is dispensable for vegetative growth and root mitosis. {ECO:0000250|UniProtKB:Q06609, ECO:0000269|PubMed:15249667}.,FUNCTION: Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination. {ECO:0000256|RuleBase:RU364139}. R-ATH-5693616; Pathways in cancer (05200),Homologous recombination (03440),Pancreatic cancer (05212),Fanconi anemia pathway (03460) 37304,35218 DNA repair protein RAD51 homolog 1 (Rad51-like protein 1) (AtRAD51),RAS associated with diabetes protein 51 chromosome [GO:0005694]; condensed nuclear chromosome [GO:0000794]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; four-way junction DNA binding [GO:0000400]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; chromosome organization involved in meiotic cell cycle [GO:0070192]; DNA metabolic process [GO:0006259]; DNA recombinase assembly [GO:0000730]; double-strand break repair [GO:0006302]; double-strand break repair via synthesis-dependent strand annealing [GO:0045003]; mitotic recombination [GO:0006312]; mitotic recombination-dependent replication fork processing [GO:1990426]; reciprocal meiotic recombination [GO:0007131]; regulation of transcription, DNA-templated [GO:0006355]; response to gamma radiation [GO:0010332]; response to radiation [GO:0009314]; strand invasion [GO:0042148],nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA-dependent ATPase activity [GO:0008094]; double-stranded DNA binding [GO:0003690]; recombinase activity [GO:0000150]; single-stranded DNA binding [GO:0003697]; double-strand break repair via homologous recombination [GO:0000724]; mitotic recombination-dependent replication fork processing [GO:1990426] DEVELOPMENTAL STAGE: Cell cycle regulated, peaking at the S phase. It is also expressed at high levels in exponentially growing cells in suspension cultures. {ECO:0000269|PubMed:9520262}. TISSUE SPECIFICITY: Detected in various tissues. Higher expression in reproductive tissues than in vegetative tissues, with the highest expression level in young flower buds. At cellular level, is expressed at low levels in flower primordia, then at higher levels in young anthers and at highest levels in both females and males meiocytes. Not detected in gametophytes. {ECO:0000269|PubMed:12139010, ECO:0000269|PubMed:15249667, ECO:0000269|PubMed:17227544, ECO:0000269|PubMed:9520262}. locus:2147092; AT5G20850 DNA repair protein Rad51 DNA repair protein RAD51 homolog Q8RV34,Q8SBB9 Q8RV34_ORYSJ,Q8SBB9_ORYSJ OsRad51A2 LOC_Os12g31370 Os12g0497300 OSNPB_120497300,OsRad51A1 LOC_Os11g40150 Os11g0615800 OsJ_34631 OSNPB_110615800 FUNCTION: Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination. {ECO:0000256|RuleBase:RU364139}. ENOG411DWWG STR11 Q0WWT7 STR11_ARATH Rhodanese-like domain-containing protein 11, chloroplastic (Sulfurtransferase 11) (AtStr11) 32114 Rhodanese-like domain-containing protein 11, chloroplastic (Sulfurtransferase 11) (AtStr11) chloroplast [GO:0009507] locus:2121994; AT4G24750 Rhodanese-like domain Os02g0596000 protein (Rhodanese-like domain-containing protein-like) (cDNA clone:J023139H13, full insert sequence),Os02g0596000 protein (Fragment) Q6ZI49,A0A0N7KFL5 Q6ZI49_ORYSJ,A0A0N7KFL5_ORYSJ Os02g0596000 Os02g0596000 OJ1126_D09.34 OJ1568_B05.1 OsJ_07367 OSNPB_020596000,Os02g0596000 OSNPB_020596000 ENOG411DWWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: tetratricopeptide repeat domain 26 NA NA NA NA NA NA NA ENOG411DWWE MCL19.25 Q9FNK3,A0A1P8BC43 Q9FNK3_ARATH,A0A1P8BC43_ARATH RNA-binding KH domain-containing protein (Uncharacterized protein At5g46190),RNA-binding KH domain-containing protein 69677,74788 RNA-binding KH domain-containing protein (Uncharacterized protein At5g46190),RNA-binding KH domain-containing protein RNA binding [GO:0003723] locus:2161413; AT5G46190 KH domain-containing protein Os08g0200400 protein A0A0P0XCV9 A0A0P0XCV9_ORYSJ Os08g0200400 OSNPB_080200400 ENOG411DWWB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA E3 ubiquitin-protein ligase E3 ubiquitin-protein ligase (EC 2.3.2.27),E3 ubiquitin-protein ligase (EC 2.3.2.27) (Fragment) Q6Z6Z3,A0A0N7KEM0 Q6Z6Z3_ORYSJ,A0A0N7KEM0_ORYSJ Os02g0128800 OsJ_05230 OSNPB_020128800 P0576F08.10,Os02g0128800 OSNPB_020128800 FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000256|RuleBase:RU201113}. ENOG411DWWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: transporter Os02g0574500 protein (Fragment) A0A0P0VKR8,A0A0P0VKQ4 A0A0P0VKR8_ORYSJ,A0A0P0VKQ4_ORYSJ Os02g0574500 OSNPB_020574500 ENOG411DWWA TOC120,TOC132 Q9LUS2,Q9SLF3 TC120_ARATH,TC132_ARATH Translocase of chloroplast 120, chloroplastic (AtToc120) (EC 3.6.5.-) (120 kDa chloroplast outer envelope protein),Translocase of chloroplast 132, chloroplastic (AtToc132) (EC 3.6.5.-) (132 kDa chloroplast outer envelope protein) FUNCTION: GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast. {ECO:0000269|PubMed:15273297}.,FUNCTION: GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast. {ECO:0000269|PubMed:15273297, ECO:0000269|PubMed:16435266}. 3.6.5.- 119918,132277 Translocase of chloroplast 120, chloroplastic (AtToc120) (EC 3.6.5.-) (120 kDa chloroplast outer envelope protein),Translocase of chloroplast 132, chloroplastic (AtToc132) (EC 3.6.5.-) (132 kDa chloroplast outer envelope protein) chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; plastid [GO:0009536]; GTP binding [GO:0005525]; hydrolase activity, acting on acid anhydrides [GO:0016817]; metal ion binding [GO:0046872]; protein targeting to chloroplast [GO:0045036],chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plastid [GO:0009536]; ATPase binding [GO:0051117]; chaperone binding [GO:0051087]; GTP binding [GO:0005525]; hydrolase activity, acting on acid anhydrides [GO:0016817]; metal ion binding [GO:0046872]; transmembrane signaling receptor activity [GO:0004888]; protein transport [GO:0015031] TISSUE SPECIFICITY: Expressed in seedlings, flowers, and roots. {ECO:0000269|PubMed:15273297}.,TISSUE SPECIFICITY: Expressed in seedlings, leaves, flowers, and roots. {ECO:0000269|PubMed:15273297}. locus:2089348;,locus:2059929; AT3G16620,AT2G16640 Translocase of chloroplast Chloroplast outer membrane protein, putative, expressed (Os10g0548800 protein) (Putative outer envelope protein) Q94LU7 Q94LU7_ORYSJ OSJNBa0082M15.3 LOC_Os10g40110 Os10g0548800 OsJ_32367 OSNPB_100548800 ENOG411DWWN MYB44,C7A10.100,MYB70 Q9FDW1,O23160,O22179 MYB44_ARATH,O23160_ARATH,O22179_ARATH Transcription factor MYB44 (Myb-related protein 44) (AtMYB44) (Myb-related protein R1) (AtMYBR1),MYB transcription factor (Myb domain protein 73) (Myb-related protein) (Putative myb-related protein),At2g23280 (MYB family transcription factor) (MYB transcription factor) (Myb domain protein 70) (Putative MYB family transcription factor) FUNCTION: Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}.,FUNCTION: Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. 33268,34849,33229 Transcription factor MYB44 (Myb-related protein 44) (AtMYB44) (Myb-related protein R1) (AtMYBR1),MYB transcription factor (Myb domain protein 73) (Myb-related protein) (Putative myb-related protein),At2g23280 (MYB family transcription factor) (MYB transcription factor) (Myb domain protein 70) (Putative MYB family transcription factor) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; abscisic acid-activated signaling pathway [GO:0009738]; cell differentiation [GO:0030154]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; regulation of jasmonic acid mediated signaling pathway [GO:2000022]; regulation of salicylic acid mediated signaling pathway [GO:2000031]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to chitin [GO:0010200]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; glucosinolate metabolic process [GO:0019760]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to cadmium ion [GO:0046686]; response to chitin [GO:0010200]; response to ethylene [GO:0009723]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751],nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; cell differentiation [GO:0030154]; regulation of transcription from RNA polymerase II promoter [GO:0006357] DEVELOPMENTAL STAGE: Expressed during very late stages of embryogenesis. Later, its expression follows a development dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}. TISSUE SPECIFICITY: Expressed in roots, stems, leaves, inflorescence, and flowers (including stamen, floral nectar, carpel, petal and sepal), mostly in vasculatures and stomata. {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:9678577}. locus:2158212;,locus:2115060;,locus:2058613; AT5G67300,AT4G37260,AT2G23290 Transcription factor Os09g0106700 protein (cDNA clone:J013055K23, full insert sequence),Os03g0424300 protein (Fragment) Q0J3I9,A0A0P0VZL7 Q0J3I9_ORYSJ,A0A0P0VZL7_ORYSJ Os09g0106700 Os09g0106700 OSNPB_090106700,Os03g0424300 OSNPB_030424300 ENOG411DWWM PCMP-E86 Q9LFI1 PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial 85674 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial intracellular membrane-bounded organelle [GO:0043231]; mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2083961; AT3G53360 Pentatricopeptide repeat-containing protein Os06g0506100 protein (Putative pentatricopeptide (PPR) repeat-containing protein) Q654C7 Q654C7_ORYSJ Os06g0506100 Os06g0506100 OSJNBb0026G06.14 OSNPB_060506100 ENOG411DWWJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WD domain G-beta repeat NA NA NA NA NA NA NA ENOG411DWWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat Os01g0764950 protein (Pentatricopeptide (PPR) repeat protein-like) Q94DX0 Q94DX0_ORYSJ P0403C05.21-1 Os01g0764950 OSNPB_010764950 ENOG411DWWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EF hand family protein Os03g0130500 protein (Fragment) A0A0P0VSK1 A0A0P0VSK1_ORYSJ Os03g0130500 OSNPB_030130500 ENOG411DWWI NAC056,NAC025,NAC018 Q9LD44,Q8GY42,Q9ZNU2 NAC56_ARATH,NAC25_ARATH,NAC18_ARATH NAC transcription factor 56 (AtNAC056) (NAC domain-containing protein 2) (AtNAC2) (Protein NAC-REGULATED SEED MORPHOLOGY 1),NAC transcription factor 25 (AtNAC025),NAC domain-containing protein 18 (ANAC018) (Protein NAC-REGULATED SEED MORPHOLOGY 2) (Protein NO APICAL MERISTEM) (AtNAM) DISRUPTION PHENOTYPE: When associated with disruption in NAC018/NARS2, abnormally shaped seeds, defect in embryogenesis sometimes arrested at the torpedo-shaped embryo stage thus leading to partial embryonic lethality, markedly delayed integuments degeneration, and delay of silique senescence. {ECO:0000269|PubMed:18849494}.,DISRUPTION PHENOTYPE: When associated with disruption in NAC056/NARS1, abnormally shaped seeds, defect in embryogenesis arrested at the torpedo-shaped embryo stage, markedly delayed integuments degeneration, and delay of silique senescence. {ECO:0000269|PubMed:18849494}. FUNCTION: Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.,FUNCTION: Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.,FUNCTION: May encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. MISCELLANEOUS: Plants silencing NAC025 produce abnormally shaped seeds. {ECO:0000269|PubMed:18849494}. 40027,36313,35443 NAC transcription factor 56 (AtNAC056) (NAC domain-containing protein 2) (AtNAC2) (Protein NAC-REGULATED SEED MORPHOLOGY 1),NAC transcription factor 25 (AtNAC025),NAC domain-containing protein 18 (ANAC018) (Protein NAC-REGULATED SEED MORPHOLOGY 2) (Protein NO APICAL MERISTEM) (AtNAM) nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; integument development [GO:0080060]; regulation of embryonic development [GO:0045995]; response to jasmonic acid [GO:0009753]; seed morphogenesis [GO:0048317]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; embryo development ending in seed dormancy [GO:0009793]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; integument development [GO:0080060]; regulation of embryonic development [GO:0045995]; seed morphogenesis [GO:0048317]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.,DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.,TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.,TISSUE SPECIFICITY: Restricted primarily to the region of the embryo including the SAM (PubMed:12175016). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:12175016, ECO:0000269|PubMed:18849494}. locus:2090186;,locus:2008490;,locus:2011516; AT3G15510,AT1G61110,AT1G52880 nac domain NAC domain-containing protein 10 (ONAC010) (NAC transcription factor ONAC010) Q8H4S4 NAC10_ORYSJ NAC010 Os07g0566500 LOC_Os07g37920 OJ1092_A07.104 OJ1773_H01.126 OsJ_24777 FUNCTION: Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. ENOG411DWWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myosin II heavy chain-like Microtubule-associated protein 70-1 (AtMAP70-1) (70 kDa microtubule-associated protein 1) Q2QLI6 MP701_ORYSJ MAP70.1 Os12g0640900 LOC_Os12g44340 OsJ_37030 FUNCTION: Plant-specific protein that interact with microtubules. {ECO:0000250}. ENOG411DWWW ASHR1 Q7XJS0 ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 (EC 2.1.1.43) (ASH1-related protein 1) (Protein SET DOMAIN GROUP 37) FUNCTION: Histone methyltransferase. {ECO:0000250}. 2.1.1.43 54828 Histone-lysine N-methyltransferase ASHR1 (EC 2.1.1.43) (ASH1-related protein 1) (Protein SET DOMAIN GROUP 37) chromosome [GO:0005694]; nucleus [GO:0005634]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872] locus:2827831; AT2G17900 Histone-lysine n-methyltransferase Os03g0704200 protein C7J059 C7J059_ORYSJ Os03g0704200 OSNPB_030704200 ENOG411DWWT HAL3A,HAL3B Q9SWE5,P94063 HAL3A_ARATH,HAL3B_ARATH Phosphopantothenoylcysteine decarboxylase (PPCDC) (EC 4.1.1.36) (AtCoaC1) (Halotolerance protein Hal3a) (AtHal3a),Probable phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (AtCoaC2) (Halotolerance protein Hal3b) (AtHal3b) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but homozygous double mutants hal3a-1 and hal3b are embryonic lethal. {ECO:0000269|PubMed:16415216}. FUNCTION: Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine. {ECO:0000269|PubMed:12860978, ECO:0000269|PubMed:16415216}.,FUNCTION: Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine. {ECO:0000269|PubMed:16415216}. PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 3/5. ARA:AT1G48605-MONOMER; R-ATH-196783; 4.1.1.36; 4.1.1.36 23355,22415 Phosphopantothenoylcysteine decarboxylase (PPCDC) (EC 4.1.1.36) (AtCoaC1) (Halotolerance protein Hal3a) (AtHal3a),Probable phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (AtCoaC2) (Halotolerance protein Hal3b) (AtHal3b) cytosol [GO:0005829]; phosphopantothenoylcysteine decarboxylase activity [GO:0004633]; coenzyme A biosynthetic process [GO:0015937]; hyperosmotic salinity response [GO:0042538]; regulation of growth [GO:0040008],FMN binding [GO:0010181]; phosphopantothenoylcysteine decarboxylase activity [GO:0004633]; coenzyme A biosynthetic process [GO:0015937]; hyperosmotic salinity response [GO:0042538]; regulation of growth [GO:0040008] TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, flowers, developing siliques and seeds with highest expression in seed embryos and phloem. {ECO:0000269|PubMed:10652125}.,TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, flowers, developing siliques and seeds. {ECO:0000269|PubMed:10652125}. locus:2087669;,locus:1006230763; AT3G18030,AT1G48605 Phosphopantothenoylcysteine decarboxylase Phosphopantothenoylcysteine decarboxylase (PPCDC) (EC 4.1.1.36) (Halotolerance protein HAL3) (OsHAL3) Q69K55 HAL3_ORYSJ HAL3 Os06g0199500 LOC_Os06g09910 B1172G12.27-1 OJ1147_D11.5-1 OsJ_20467 FUNCTION: Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. Involved in salt and osmotic tolerance, and light-regulated plant growth. Trimerization of HAL3 recruits and activates the E3 ubiquitin-protein ligase HIP1, which leads to the degradation of cell cycle suppressors, resulting in enhancement of cell division and plant growth. HAL3 function in cell division seems to be independent from its PPC decarboxylase activity. {ECO:0000269|PubMed:19232050, ECO:0000269|PubMed:19543273}. MISCELLANEOUS: Seedlings over-expressing HAL3 show enhanced growth rate under normal light/dark cycles, enhanced salt tolerance and Na(+)/K(+) homeostasis. Enhanced growth is due to increased cell number of root meristematic zone and root cap (PubMed:19543273). {ECO:0000305|PubMed:19543273}. ENOG411DWWU CNGC16,CNGC18 Q9SU64,Q9LEQ3 CNG16_ARATH,CNG18_ARATH Probable cyclic nucleotide-gated ion channel 16 (Cyclic nucleotide- and calmodulin-regulated ion channel 16),Cyclic nucleotide-gated ion channel 18 (Cyclic nucleotide- and calmodulin-regulated ion channel 18) DISRUPTION PHENOTYPE: Male sterility. {ECO:0000269|PubMed:17726111}. Pollen tubes show severe growth defect. Tubes are kinky short and often thin. Tubes grow only a short distance with nondirectional growth often terminating prematurely with a bursting event. Complete male gametophyte defective-J. Harper-2007 FUNCTION: Putative cyclic nucleotide-gated ion channel.,FUNCTION: Cyclic nucleotide-gated ion channel required for directional pollen tube growth into the transmitting tract (PubMed:17726111, PubMed:26929345). Acts as a Ca(2+)-permeable divalent cation-selective channel inhibited by either lanthanum or gadolinium (PubMed:24380879). Regulated by CPK32 to mediate Ca(2+) transport across the plasma membrane in response to Ca(2+) oscillation (PubMed:24121288). {ECO:0000269|PubMed:17726111, ECO:0000269|PubMed:24121288, ECO:0000269|PubMed:24380879, ECO:0000269|PubMed:26929345}. R-ATH-2485179;R-ATH-2514859;R-ATH-5620916; 81955,80364 Probable cyclic nucleotide-gated ion channel 16 (Cyclic nucleotide- and calmodulin-regulated ion channel 16),Cyclic nucleotide-gated ion channel 18 (Cyclic nucleotide- and calmodulin-regulated ion channel 18) integral component of plasma membrane [GO:0005887]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; regulation of membrane potential [GO:0042391],apical plasma membrane [GO:0016324]; cytoplasmic vesicle membrane [GO:0030659]; integral component of plasma membrane [GO:0005887]; calcium channel activity [GO:0005262]; calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]; cellular calcium ion homeostasis [GO:0006874]; pollen tube growth [GO:0009860]; regulation of membrane potential [GO:0042391] TISSUE SPECIFICITY: Expressed in pollen grains. Not detected in leaves, roots or root hairs. {ECO:0000269|PubMed:17726111}. locus:2097860;,locus:2185510; AT3G48010,AT5G14870 cyclic nucleotide-gated ion channel Os12g0163000 protein,Os12g0163100 protein A0A0P0Y776,A0A0P0Y7D7 A0A0P0Y776_ORYSJ,A0A0P0Y7D7_ORYSJ Os12g0163000 OSNPB_120163000,Os12g0163100 OSNPB_120163100 ENOG411DWWR F4I312 F4I312_ARATH Vacuolar sorting protein 39 FUNCTION: Essential protein required during embryogenesis. Believed to act as a component of the putative class C core vacuole/endosome tethering (CORVET) endosomal tethering complexes. CORVET is required for vacuolar transport of SYP22. Involved in root development (PubMed:29463724). Plays a role in vesicle-mediated protein trafficking of the endocytic membrane transport pathway (By similarity). {ECO:0000250|UniProtKB:Q8WUH2, ECO:0000269|PubMed:29463724}. 109906 Vacuolar sorting protein 39 cytosol [GO:0005829]; HOPS complex [GO:0030897]; intracellular protein transport [GO:0006886]; vacuole fusion [GO:0097576]; vesicle-mediated transport [GO:0016192] locus:2017714; AT1G22860 transforming growth factor-beta receptor-associated protein Os05g0104100 protein Q75M25 Q75M25_ORYSJ Os05g0104100 Os05g0104100 OsJ_16796 OSNPB_050104100 P0668H12.12 ENOG411DWWS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA mannosyl-oligosaccharide Os01g0921200 protein A0A0P0VC79 A0A0P0VC79_ORYSJ Os01g0921200 OSNPB_010921200 ENOG411DWWP Q0WUR1 Q0WUR1_ARATH Eukaryotic translation initiation factor SUI1 family protein (Uncharacterized protein At1g71350) 65674 Eukaryotic translation initiation factor SUI1 family protein (Uncharacterized protein At1g71350) translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; IRES-dependent translational initiation of linear mRNA [GO:0002192] locus:2825349; AT1G71350 eukaryotic translation initiation factor Os02g0557600 protein (Putative Ligatin (Hepatocellular carcinoma-associated antigen 56)) Q6YVX8 Q6YVX8_ORYSJ Os02g0557600 OSJNBb0038F20.9 OSNPB_020557600 ENOG411DWWQ Q9FL82 FB270_ARATH F-box protein At5g39250 29300 F-box protein At5g39250 ubiquitin ligase complex [GO:0000151]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2157205; AT5G39250 F-box protein Expressed protein (F-box domain containing protein, expressed) (Os03g0423000 protein) (cDNA clone:J023031J08, full insert sequence) Q84MG7 Q84MG7_ORYSJ LOC_Os03g30920 Os03g0423000 Os03g30920 OsJ_11320 OSNPB_030423000 ENOG411DWWZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA armadillo beta-catenin-like repeat family protein Armadillo/beta-catenin-like repeat family protein, expressed (Os10g0147900 protein) (cDNA clone:J023037M05, full insert sequence) Q33B25 Q33B25_ORYSJ Os10g0147900 LOC_Os10g05730 Os10g0147900 OSNPB_100147900 ENOG411DWWX ULT1,ULT2 Q8GZA8,Q8S8I2,F4JKJ1 ULT1_ARATH,ULT2_ARATH,F4JKJ1_ARATH Protein ULTRAPETALA 1,Protein ULTRAPETALA 2,Developmental regulator, ULTRAPETALA clf-2 phenotype is rescued by ult1-3 allele. FUNCTION: Putative transcription factor that acts as a key negative regulator of cell accumulation in shoot and floral meristems. Negatively regulates the size of the WUSCHEL (WUS)-expressing organizing center in inflorescence meristems. May act by down-regulating expression of WUS. {ECO:0000269|PubMed:15342527, ECO:0000269|PubMed:15673576}.,FUNCTION: Putative transcription factor that acts as a key negative regulator of cell accumulation in shoot and floral meristems. Negatively regulates the size of the WUSCHEL (WUS)-expressing organizing center in inflorescence meristems. May act by down-regulating expression of WUS. Can compensate for mutant ULT1 protein when overexpressed. {ECO:0000269|PubMed:15673576}. 26744,26098,30164 Protein ULTRAPETALA 1,Protein ULTRAPETALA 2,Developmental regulator, ULTRAPETALA cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; multicellular organism development [GO:0007275]; negative regulation of flower development [GO:0009910]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; DNA binding [GO:0003677]; multicellular organism development [GO:0007275]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],cytosol [GO:0005829]; nucleus [GO:0005634]; floral meristem determinacy [GO:0010582]; meristem determinacy [GO:0010022]; regulation of floral meristem growth [GO:0010080]; regulation of inflorescence meristem growth [GO:0010081] DEVELOPMENTAL STAGE: Expressed in embryonic shoot apical meristems, in inflorescence and floral meristems, and in developing stamens, carpels and ovules. Also expressed in vegetative meristems and leaf primordia. {ECO:0000269|PubMed:15673576}.,DEVELOPMENTAL STAGE: Specifically expressed during the reproductive developmental stage. Expressed in embryonic shoot apical meristems, in inflorescence and floral meristems, and in developing stamens, carpels and ovules. {ECO:0000269|PubMed:15673576}. TISSUE SPECIFICITY: Expressed in roots, 8-day-old seedlings, mature leaves, stems, influorescence, pollen and siliques, with a higher expression in influorescence. {ECO:0000269|PubMed:15673576}.,TISSUE SPECIFICITY: Expressed in influorescence, pollen and siliques, with a higher expression in influorescence. {ECO:0000269|PubMed:15673576}. locus:2827502;,locus:2123668; AT4G28190,AT2G20825 ultrapetala Os01g0780800 protein,Os05g0502700 protein Q5ZAW0,A0A0P0WP77,A0A0P0V8X1 Q5ZAW0_ORYSJ,A0A0P0WP77_ORYSJ,A0A0P0V8X1_ORYSJ B1100D10.3-1 P0010B10.33-1 Os01g0780800 OsJ_03678 OSNPB_010780800,Os05g0502700 OSNPB_050502700,Os01g0780800 OSNPB_010780800 ENOG411DWWY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA globulin seed storage protein 2-like NA NA NA NA NA NA NA ENOG411ECG8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Alcohol dehydrogenase GroES-like domain NA NA NA NA NA NA NA ENOG411E23J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SNARE associated Golgi protein Os02g0693500 protein (cDNA clone:J033135D20, full insert sequence),Os04g0592600 protein (cDNA clone:J023077L10, full insert sequence) Q6Z897,B7EIW6 Q6Z897_ORYSJ,B7EIW6_ORYSJ Os02g0693500 OJ1148_D05.28 OsJ_08003 OSNPB_020693500 P0017H11.16,Os04g0592600 OsJ_15985 OSNPB_040592600 ENOG411E23D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tubulin is the major constituent of microtubules. It binds two moles of GTP one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity) NA NA NA NA NA NA NA ENOG411E23E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0139300 protein) (Os03g0139400 protein) (cDNA clone:J023050D10, full insert sequence),Os02g0229200 protein (Fragment) Q10S08,A0A0N7KEZ1 Q10S08_ORYSJ,A0A0N7KEZ1_ORYSJ Os03g0139400 LOC_Os03g04610 Os03g0139300 OsJ_09343 OSNPB_030139400,Os02g0229200 OSNPB_020229200 ENOG411E23A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cytochrome b5-like Heme/Steroid binding domain Os02g0640300 protein (Steroid membrane binding protein-like),Os10g0502600 protein Q6H7E0,A0A0P0XW12 Q6H7E0_ORYSJ,A0A0P0XW12_ORYSJ Os02g0640300 Os02g0640300 OsJ_07680 OSNPB_020640300 P0010C01.30,Os10g0502600 OSNPB_100502600 ENOG411E23B F10N7.210 Q5EAF1,O49393,Q9LFM8 Q5EAF1_ARATH,O49393_ARATH,Q9LFM8_ARATH At5g11290 (Transmembrane protein, putative (DUF247)),PPPDE thiol peptidase family protein (Uncharacterized protein AT4g31980) (Uncharacterized protein F10N7.210),Transmembrane protein, putative (DUF247) (Uncharacterized protein F2I11_180) 40973,77684,48570 At5g11290 (Transmembrane protein, putative (DUF247)),PPPDE thiol peptidase family protein (Uncharacterized protein AT4g31980) (Uncharacterized protein F10N7.210),Transmembrane protein, putative (DUF247) (Uncharacterized protein F2I11_180) integral component of membrane [GO:0016021] locus:2148042;,locus:2116667; AT5G11290,AT4G31980 UPF0481 protein Os05g0242000 protein,Os01g0562000 protein,Os01g0561700 protein,Os01g0562600 protein (Fragment) Q60E19,Q5JMN6,A0A0P0V449,A0A0P0V445 Q60E19_ORYSJ,Q5JMN6_ORYSJ,A0A0P0V449_ORYSJ,A0A0P0V445_ORYSJ Os05g0242000 Os05g0242000 OsJ_17762 OSJNBa0004B23.4 OSNPB_050242000,Os01g0562000 OsJ_02245 OSNPB_010562000 P0496H05.25,Os01g0561700 OSNPB_010561700,Os01g0562600 OSNPB_010562600 ENOG411ECHY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AUX/IAA family Auxin-responsive protein IAA11 (Indoleacetic acid-induced protein 11) Q75GK0 IAA11_ORYSJ IAA11 Os03g0633500 LOC_Os03g43400 OSJNBa0010N03.17 FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000250}. ENOG411EKJS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Regulator of chromosome condensation (RCC1) repeat NA NA NA NA NA NA NA ENOG411E238 XI-D,XI-A,XID F4IVR7,F4I5Q6,A0A1P8AZE5,A0A1P8AZF4,A0A1P8AZG5,A0A1P8AZD5,A0A1P8AZF2 MYO10_ARATH,MYO7_ARATH,A0A1P8AZE5_ARATH,A0A1P8AZF4_ARATH,A0A1P8AZG5_ARATH,A0A1P8AZD5_ARATH,A0A1P8AZF2_ARATH Myosin-10 (Myosin XI D) (AtXID),Myosin-7 (Myosin XI A) (AtXIA),Myosin XI D FUNCTION: Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250}. 200639,196122,198104,200313,199006,197793,141509 Myosin-10 (Myosin XI D) (AtXID),Myosin-7 (Myosin XI A) (AtXIA),Myosin XI D myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]; actin filament-based movement [GO:0030048],myosin complex [GO:0016459]; actin binding [GO:0003779]; ATP binding [GO:0005524]; motor activity [GO:0003774],myosin complex [GO:0016459]; ATP binding [GO:0005524]; motor activity [GO:0003774] locus:2046570;,locus:2197773; AT2G33240,AT1G04600 Myosin N-terminal SH3-like domain NA NA NA NA NA NA NA ENOG411E236 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0221100 protein (Fragment) A0A0P0VUS9 A0A0P0VUS9_ORYSJ Os03g0221100 OSNPB_030221100 ENOG411EKJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: glutathione Stransferase NA NA NA NA NA NA NA ENOG411EKJM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glutathione S-transferase N-terminal domain NA NA NA NA NA NA NA ENOG411EEFD WRKY46 Q9SKD9 WRK46_ARATH Probable WRKY transcription factor 46 (WRKY DNA-binding protein 46) DISRUPTION PHENOTYPE: Decreased tolerance to dehydration and salt stress. {ECO:0000269|PubMed:24773321}. FUNCTION: Transcription factor involved in the regulation of osmotic stress responses and stomatal movement (PubMed:24773321). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250, ECO:0000269|PubMed:24773321}. 33635 Probable WRKY transcription factor 46 (WRKY DNA-binding protein 46) nucleolus [GO:0005730]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; lateral root development [GO:0048527]; regulation of transcription, DNA-templated [GO:0006355]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in guard cells, hypocotyls, and in the vascular tissues of cotyledon and root. {ECO:0000269|PubMed:24773321}. locus:2039119; AT2G46400 WRKY NA NA NA NA NA NA NA ENOG411EEFE AHA9,AHA8,AHA6,HA9 Q42556,Q9M2A0,Q9SH76,A0A1P8AMR6,F4HU00,A0A1P8AMR3 PMA9_ARATH,PMA8_ARATH,PMA6_ARATH,A0A1P8AMR6_ARATH,F4HU00_ARATH,A0A1P8AMR3_ARATH ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9),ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8),ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6),Plasma membrane ATPase (EC 3.6.3.6) FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses.,FUNCTION: The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses (By similarity). {ECO:0000250}. ARA:AT1G80660-MONOMER;,ARA:AT3G42640-MONOMER;,ARA:AT2G07560-MONOMER; 3.6.3.6 105208,104131,105012,102172,90978,102058 ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9),ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8),ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6),Plasma membrane ATPase (EC 3.6.3.6) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; metal ion binding [GO:0046872]; ATP biosynthetic process [GO:0006754]; proton transport [GO:0015992],integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; metal ion binding [GO:0046872]; ATP biosynthetic process [GO:0006754],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; hydrogen-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; ATP biosynthetic process [GO:0006754] TISSUE SPECIFICITY: Anther specific. locus:2025727;,locus:2096549;,locus:2053343; AT1G80660,AT3G42640,AT2G07560 Cation_ATPase_N NA NA NA NA NA NA NA ENOG411EEFF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor superfamily protein NA NA NA NA NA NA NA ENOG411EKJK NFS2 Q93WX6 CNIF1_ARATH Cysteine desulfurase 1, chloroplastic (EC 2.8.1.7) (NIFS-like protein 1) (CpNifS1) (Plastid sufS-like protein) (Protein AtCpNifS) (Selenocysteine lyase) (EC 4.4.1.16) FUNCTION: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine (PubMed:12033984, PubMed:16455656). Supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters (PubMed:15480755, PubMed:17372218). Required for the maturation of all plastidic Fe-S proteins and, thus, essential for plant growth (PubMed:17372218). {ECO:0000269|PubMed:12033984, ECO:0000269|PubMed:15480755, ECO:0000269|PubMed:16455656, ECO:0000269|PubMed:17372218}. 2.8.1.7; 2.8.1.7; 4.4.1.16 50485 Cysteine desulfurase 1, chloroplastic (EC 2.8.1.7) (NIFS-like protein 1) (CpNifS1) (Plastid sufS-like protein) (Protein AtCpNifS) (Selenocysteine lyase) (EC 4.4.1.16) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cysteine desulfurase activity [GO:0031071]; pyridoxal phosphate binding [GO:0030170]; selenocysteine lyase activity [GO:0009000]; cysteine metabolic process [GO:0006534]; iron incorporation into metallo-sulfur cluster [GO:0018283]; response to selenium ion [GO:0010269]; selenium compound metabolic process [GO:0001887]; sulfur compound metabolic process [GO:0006790] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12033984, ECO:0000269|PubMed:12427997}. locus:2201856; AT1G08490 Cysteine desulfurase Os12g0287300 protein (Fragment) Q0INV6,A0A0P0Y983 Q0INV6_ORYSJ,A0A0P0Y983_ORYSJ Os12g0287300 Os12g0287300 OSNPB_120287300,Os12g0287300 OSNPB_120287300 ENOG411EEFB Q4V3D2 Q4V3D2_ARATH At5g36260 (Eukaryotic aspartyl protease family protein) 51981 At5g36260 (Eukaryotic aspartyl protease family protein) anchored component of membrane [GO:0031225]; integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508] locus:2183617; AT5G36260 Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411EEFC Q8LBH2,P94017,A0A1P8AQS8 CAP8_ARATH,CAP9_ARATH,A0A1P8AQS8_ARATH Putative clathrin assembly protein At2g01600,Putative clathrin assembly protein At1g14910,ENTH/ANTH/VHS superfamily protein 63629,75516,74953 Putative clathrin assembly protein At2g01600,Putative clathrin assembly protein At1g14910,ENTH/ANTH/VHS superfamily protein clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897],clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897],clathrin-coated vesicle [GO:0030136]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268] TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10231030}. locus:2049587;,locus:2006727; AT2G01600,AT1G14910 ENTH NA NA NA NA NA NA NA ENOG411EEF9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc NA NA NA NA NA NA NA ENOG411EKJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Aminotransferase class-V Putative L-cysteine desulfhydrase 2 (EC 4.4.1.28) (OsL-CDes2) (L-CDes2),Os01g0290600 protein Q5JNT6,A0A0P0V1C4 LCYD2_ORYSJ,A0A0P0V1C4_ORYSJ Os01g0290600 LOC_Os01g18660 P0469E05.32 P0706B05.1,Os01g0290600 OSNPB_010290600 FUNCTION: Catalyzes the production of hydrogen sulfide (H2S) from cysteine. {ECO:0000250|UniProtKB:Q9M1R1}. ENOG411EEF6 BHLH55 Q9LN95 BH055_ARATH Transcription factor bHLH55 (Basic helix-loop-helix protein 55) (AtbHLH55) (bHLH 55) (Transcription factor EN 1) (bHLH transcription factor bHLH055) 29100 Transcription factor bHLH55 (Basic helix-loop-helix protein 55) (AtbHLH55) (bHLH 55) (Transcription factor EN 1) (bHLH transcription factor bHLH055) RNA polymerase II transcription factor complex [GO:0090575]; protein dimerization activity [GO:0046983]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. locus:2034750; AT1G12540 Helix-loop-helix DNA-binding domain NA NA NA NA NA NA NA ENOG411EEF7 CRK9 O65469 CRK9_ARATH Putative cysteine-rich receptor-like protein kinase 9 (Cysteine-rich RLK9) 29722 Putative cysteine-rich receptor-like protein kinase 9 (Cysteine-rich RLK9) apoplast [GO:0048046]; programmed cell death [GO:0012501]; response to salicylic acid [GO:0009751]; systemic acquired resistance [GO:0009627] locus:2121666; AT4G23170 Pfam:DUF26 NA NA NA NA NA NA NA ENOG411EEF1 Q9FVT9 Q9FVT9_ARATH Disease resistance protein RPP1-WsB, putative (Toll-Interleukin-Resistance (TIR) domain family protein) 19412 Disease resistance protein RPP1-WsB, putative (Toll-Interleukin-Resistance (TIR) domain family protein) cellular response to hypoxia [GO:0071456]; signal transduction [GO:0007165] locus:2206455; AT1G57630 TIR NA NA NA NA NA NA NA ENOG411ECE1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411E266 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase Os05g0133401 protein C7J2T4 C7J2T4_ORYSJ Os05g0133401 Os05g0133401 OSNPB_050133401 ENOG411E265 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl transferase family 8 Hexosyltransferase (EC 2.4.1.-) Q5Z7Z8 Q5Z7Z8_ORYSJ OJ1663_H12.25 Os06g0712500 OSNPB_060712500 ENOG411E262 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fatty acid hydroxylase superfamily Acid phosphatase-like (Os06g0330400 protein) Q69UX2 Q69UX2_ORYSJ Os06g0330400 OJ1230_H04.27 OsJ_21198 OSNPB_060330400 ENOG411E261 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os07g0582850 protein (Putative sugar transport protein) Q6ZFM2 Q6ZFM2_ORYSJ Os07g0582850 Os07g0582850 OJ1301_C12.29 OSNPB_070582850 ENOG411E260 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E26W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411E26V sks18 Q1PFD0 Q1PFD0_ARATH Multi-copper oxidase type I family protein (SKU5 similar 18) ARA:AT1G75790-MONOMER; 61381 Multi-copper oxidase type I family protein (SKU5 similar 18) copper ion binding [GO:0005507]; oxidoreductase activity, oxidizing metal ions [GO:0016722] locus:2005594; AT1G75790 Multicopper oxidase NA NA NA NA NA NA NA ENOG411E26U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA POT family Os11g0426100 protein (Similar to peptide/amino acid transporter-like protein) Q53K47 Q53K47_ORYSJ Os11g0426100 OsJ_06558 OSNPB_110426100 ENOG411E26T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Neutral/alkaline non-lysosomal ceramidase NA NA NA NA NA NA NA ENOG411E26S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ulp1 protease family C-terminal catalytic domain Os03g0410100 protein A0A0P0VZG9 A0A0P0VZG9_ORYSJ Os03g0410100 OSNPB_030410100 ENOG411E26R MYB35 Q9LSI7 MYB35_ARATH Transcription factor MYB35 (Myb-related protein 35) (AtMYB35) (Protein DEFECTIVE IN TAPETAL DEVELOPMENT AND FUNCTION 1) DISRUPTION PHENOTYPE: Male-sterile mutant, defective in tapetal development, characterized by irregular and excessive division, redundant cells and leading to dysfunction of the tapetum (PubMed:18397379, PubMed:21957980). Impaired callose dissolution resulting in altered microspores release from the tetrads and no pollen production (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. Male sterile due to defects in anther development. Earliest defect seen at developmental stage 6. Tapetal cells do not develop into secretory tapetal cells. Excessive tapetal cell division.Microspores also developmentally defective. Male sterile; Abnormal anther development; Complete loss of pollen development-Z. Yang-2008 FUNCTION: Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. 35813 Transcription factor MYB35 (Myb-related protein 35) (AtMYB35) (Protein DEFECTIVE IN TAPETAL DEVELOPMENT AND FUNCTION 1) nucleus [GO:0005634]; RNA polymerase II transcription factor activity, sequence-specific DNA binding [GO:0000981]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, RNA polymerase II transcription factor recruiting [GO:0001135]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription regulatory region DNA binding [GO:0044212]; anther wall tapetum development [GO:0048658]; callose localization [GO:0052545]; cell differentiation [GO:0030154]; microgametogenesis [GO:0055046]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. TISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}. locus:2088957; AT3G28470 Transcription factor Os03g0296000 protein A0A0P0VX49 A0A0P0VX49_ORYSJ Os03g0296000 OSNPB_030296000 ENOG411E26Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA No apical meristem (NAM) protein Os01g0667000 protein (Fragment) A0A0P0V6F9 A0A0P0V6F9_ORYSJ Os01g0667000 OSNPB_010667000 ENOG411E26P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphatidylethanolamine-binding protein Os09g0513500 protein A0A0P0XPA0 A0A0P0XPA0_ORYSJ Os09g0513500 OSNPB_090513500 ENOG411E26Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cellulase (glycosyl hydrolase family 5) Mannan endo-1,4-beta-mannosidase 3 (EC 3.2.1.78) (Beta-mannanase 3) (Endo-beta-1,4-mannanase 3) (OsMAN3),Mannan endo-1,4-beta-mannosidase 4 (EC 3.2.1.78) (Beta-mannanase 4) (Endo-beta-1,4-mannanase 4) (OsMAN4),Os03g0828300 protein Q0DM48,Q10B67,C7IZY9 MAN3_ORYSJ,MAN4_ORYSJ,C7IZY9_ORYSJ MAN3 Os03g0828300 LOC_Os03g61270 OSJNBa0010E04.20,MAN4 Os03g0828500 LOC_Os03g61280 OSJNBa0010E04.2,Os03g0828300 OSNPB_030828300 ENOG411E26Y NGR3,NGR2 Q1G3U5,Q5XVG3,A0A1P8ARW5,A0A1P8AQ88,A0A1P8ATW2,B3H583,B3H791 Q1G3U5_ARATH,Q5XVG3_ARATH,A0A1P8ARW5_ARATH,A0A1P8AQ88_ARATH,A0A1P8ATW2_ARATH,B3H583_ARATH,B3H791_ARATH NGR3,NGR2,Uncharacterized protein 19828,33055,26269,20084,33199,19682,19665 NGR3,NGR2,Uncharacterized protein lateral root branching [GO:0080181] locus:4010713453;,locus:2194012; AT1G19115,AT1G72490 NA Os07g0614400 protein (cDNA clone:J033138F17, full insert sequence) Q7XHP3 Q7XHP3_ORYSJ P0616D06.116 Os07g0614400 OSNPB_070614400 ENOG411E26X NTR2,NTR1,NTRA Q39242,Q39243,A0A1P8AZS7 TRXB2_ARATH,TRXB1_ARATH,A0A1P8AZS7_ARATH Thioredoxin reductase 2 (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase 2) (NTR2) (NADPH-dependent thioredoxin reductase A) (AtNTRA),Thioredoxin reductase 1, mitochondrial (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase 1) (NTR1) (NADPH-dependent thioredoxin reductase B) (AtNTRB),Thioredoxin reductase (EC 1.8.1.9) Double mutant plants are viable but the pollen has reduced fitness and they showed slowed plant growth modified seed shape and high accumulation of anthocyanins. Seedlings are not hypersensitive to oxidant stresses,ntra ntrb rml1 plants do not show any shoot and root meristematic activity. Meristematic activities of most ntra ntrb rml1 plants are rescued when transferred to Murashige and Skoog (MS) medium containing GSH. The germination rate of the ntra ntrb rml1 seeds is also perturbed. FUNCTION: Possesses thioredoxin-disulfide reductase activity towards thioredoxins O1, O2 and F3. {ECO:0000269|PubMed:11717467}. MISCELLANEOUS: The active site is a redox-active disulfide bond. {ECO:0000250}.,MISCELLANEOUS: The active site is a redox-active disulfide bond. ARA:AT2G17420-MONOMER;,ARA:AT4G35460-MONOMER; 1.8.1.9; 1.8.1.9 40635,39626,38257 Thioredoxin reductase 2 (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase 2) (NTR2) (NADPH-dependent thioredoxin reductase A) (AtNTRA),Thioredoxin reductase 1, mitochondrial (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase 1) (NTR1) (NADPH-dependent thioredoxin reductase B) (AtNTRB),Thioredoxin reductase (EC 1.8.1.9) mitochondrial matrix [GO:0005759]; thioredoxin-disulfide reductase activity [GO:0004791]; removal of superoxide radicals [GO:0019430],chloroplast envelope [GO:0009941]; cytosol [GO:0005829]; mitochondrion [GO:0005739]; thioredoxin-disulfide reductase activity [GO:0004791]; removal of superoxide radicals [GO:0019430],cytoplasm [GO:0005737]; thioredoxin-disulfide reductase activity [GO:0004791]; removal of superoxide radicals [GO:0019430] TISSUE SPECIFICITY: Ubiquitous. locus:2117612; AT2G17420,AT4G35460 nadph-dependent thioredoxin reductase NA NA NA NA NA NA NA ENOG411E26G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Strictosidine synthase Os09g0374900 protein A0A0P0XLT0 A0A0P0XLT0_ORYSJ Os09g0374900 OSNPB_090374900 ENOG411E26F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411E26E SNAP30 Q9LMG8 SNP30_ARATH Putative SNAP25 homologous protein SNAP30 (AtSNAP30) (Synaptosomal-associated protein SNAP25-like 3) FUNCTION: Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}. 29075 Putative SNAP25 homologous protein SNAP30 (AtSNAP30) (Synaptosomal-associated protein SNAP25-like 3) cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; SNAP receptor activity [GO:0005484]; membrane fusion [GO:0061025]; protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192] locus:2014824; AT1G13890 t_SNARE NA NA NA NA NA NA NA ENOG411E26D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain NA NA NA NA NA NA NA ENOG411E26A HAT9,HAT22 P46603,P46604 HAT9_ARATH,HAT22_ARATH Homeobox-leucine zipper protein HAT9 (Homeodomain-leucine zipper protein HAT9) (HD-ZIP protein 9),Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) FUNCTION: Probable transcription factor. {ECO:0000250}. 29878,30730 Homeobox-leucine zipper protein HAT9 (Homeodomain-leucine zipper protein HAT9) (HD-ZIP protein 9),Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; abscisic acid-activated signaling pathway [GO:0009738]; response to abscisic acid [GO:0009737]; response to cytokinin [GO:0009735]; response to water deprivation [GO:0009414]; transcription, DNA-templated [GO:0006351] locus:2059143;,locus:2137599; AT2G22800,AT4G37790 homeobox-leucine zipper protein Homeobox-leucine zipper protein HOX19 (HD-ZIP protein HOX19) (Homeodomain transcription factor HOX19) (OsHox19),Os03g0231150 protein (Fragment),Os03g0231000 protein (Fragment) Q8GRL4,A0A0P0VVB0,A0A0P0VV30 HOX19_ORYSJ,A0A0P0VVB0_ORYSJ,A0A0P0VV30_ORYSJ HOX19 Os03g0231000 LOC_Os03g12860 OJ1017C11.5 OJ1781E12.8,Os03g0231150 OSNPB_030231150,Os03g0231000 OSNPB_030231000 FUNCTION: Probable transcription factor. {ECO:0000250}. ENOG411E26N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sugar (and other) transporter Os01g0966900 protein A0A0P0VDA3 A0A0P0VDA3_ORYSJ Os01g0966900 OSNPB_010966900 ENOG411E26H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain Os05g0563600 protein (cDNA clone:J023144L21, full insert sequence) Q6AUG3 Q6AUG3_ORYSJ Os05g0563600 Os05g0563600 OSJNBb0053D02.8 OSNPB_050563600 ENOG411EJ69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EJ68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: uridine kinase NA NA NA NA NA NA NA ENOG411EJ67 Q84WZ5,Q84WZ4,A0A1P8B0K6,A0A1P8B0M2 Q84WZ5_ARATH,Q84WZ4_ARATH,A0A1P8B0K6_ARATH,A0A1P8B0M2_ARATH Plant/protein (Uncharacterized protein At2g39855/T5I7.3),Plant/protein 15536,16898,13327,14690 Plant/protein (Uncharacterized protein At2g39855/T5I7.3),Plant/protein locus:504955928; AT2G39855 NA NA NA NA NA NA NA NA ENOG411EJ66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3633) NA NA NA NA NA NA NA ENOG411EJ62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant self-incompatibility protein S1 NA NA NA NA NA NA NA ENOG411EJ61 Q9C8X0 Q9C8X0_ARATH At1g71910 (Uncharacterized protein At1g71910/F17M19_6) (Uncharacterized protein F17M19.6) 19606 At1g71910 (Uncharacterized protein At1g71910/F17M19_6) (Uncharacterized protein F17M19.6) locus:2016094; AT1G71910 NA NA NA NA NA NA NA NA ENOG411EJ6N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ6M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Nucleolar complex associated 4 homolog (S. cerevisiae) NA NA NA NA NA NA NA ENOG411EJ6K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant mobile domain Os09g0363200 protein (Fragment) A0A0P0XMQ2 A0A0P0XMQ2_ORYSJ Os09g0363200 OSNPB_090363200 ENOG411EJ6J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA D-mannose binding lectin NA NA NA NA NA NA NA ENOG411EJ6I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fasciclin domain NA NA NA NA NA NA NA ENOG411EJ6H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) NA NA NA NA NA NA NA ENOG411EJ6G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0485900 protein Q7XD94 Q7XD94_ORYSJ LOC_Os10g34450 Os10g0485900 OSJNBa0029C15.21 OSNPB_100485900 ENOG411EJ6F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT NA NA NA NA NA NA NA ENOG411EJ6E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0516432 protein (Fragment) A0A0P0WXC4 A0A0P0WXC4_ORYSJ Os06g0516432 OSNPB_060516432 ENOG411EJ6D Q9LMQ5,A0A1P8AVD7,A0A1P8AV92 Q9LMQ5_ARATH,A0A1P8AVD7_ARATH,A0A1P8AV92_ARATH F7H2.13 protein (Mediator of RNA polymerase II transcription subunit 15a-like protein) (Uncharacterized protein At1g15790),Mediator of RNA polymerase II transcription subunit 15a-like protein 20323,21151,21444 F7H2.13 protein (Mediator of RNA polymerase II transcription subunit 15a-like protein) (Uncharacterized protein At1g15790),Mediator of RNA polymerase II transcription subunit 15a-like protein cytosol [GO:0005829]; transcription cofactor activity [GO:0003712]; regulation of transcription, DNA-templated [GO:0006355],transcription cofactor activity [GO:0003712]; regulation of transcription, DNA-templated [GO:0006355],integral component of membrane [GO:0016021]; transcription cofactor activity [GO:0003712]; regulation of transcription, DNA-templated [GO:0006355] locus:2036169; AT1G15790 NA NA NA NA NA NA NA NA ENOG411EJ6C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ6B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX NA NA NA NA NA NA NA ENOG411EJ6A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Reverse transcriptase (RNA-dependent DNA polymerase) Os07g0485366 protein,Os07g0485300 protein A0A0P0X6S8,A0A0P0X6E5 A0A0P0X6S8_ORYSJ,A0A0P0X6E5_ORYSJ Os07g0485366 OSNPB_070485366,Os07g0485300 OSNPB_070485300 ENOG411EJ6Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant transposon protein NA NA NA NA NA NA NA ENOG411EJ6Y Q6NL28 Q6NL28_ARATH At4g04745 17221 At4g04745 locus:504955248; AT4G04745 NA NA NA NA NA NA NA NA ENOG411EJ6X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: atp-dependent rna helicase NA NA NA NA NA NA NA ENOG411EJ6W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: integrator complex subunit 4 NA NA NA NA NA NA NA ENOG411EJ6V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: zinc finger NA NA NA NA NA NA NA ENOG411EJ6U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1639) Os12g0284525 protein,Os11g0562266 protein (Fragment),Os03g0584224 protein (Fragment),Os08g0305100 protein (Fragment),Os09g0545051 protein Q2QTS5,A0A0P0Y397,A0A0P0VZP2,A0A0P0XE24,A0A0P0XPY2 Q2QTS5_ORYSJ,A0A0P0Y397_ORYSJ,A0A0P0VZP2_ORYSJ,A0A0P0XE24_ORYSJ,A0A0P0XPY2_ORYSJ Os12g0284525 LOC_Os12g18670 OSNPB_120284525,Os11g0562266 OSNPB_110562266,Os03g0584224 OSNPB_030584224,Os08g0305100 OSNPB_080305100,Os09g0545051 OSNPB_090545051 ENOG411EJ6T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2HC Os01g0559450 protein A0A0P0V435 A0A0P0V435_ORYSJ Os01g0559450 OSNPB_010559450 ENOG411EJ6S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EJ6R F4I6H5,F4J5F4 F4I6H5_ARATH,F4J5F4_ARATH Plant transposase (Ptta/En/Spm family) 44638,57645 Plant transposase (Ptta/En/Spm family) locus:1005716708;,locus:2089807; AT1G40087,AT3G30200 Transposase Ptta En Spm NA NA NA NA NA NA NA ENOG411EJ6Q MNA5.2 Q9FKQ7 Q9FKQ7_ARATH Uncharacterized protein At5g65300 16457 Uncharacterized protein At5g65300 locus:2168215; AT5G65300 NA NA NA NA NA NA NA NA ENOG411EJ6P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Uncharacterised protein family (UPF0081) NA NA NA NA NA NA NA ENOG411EA7Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolases family 17 NA NA NA NA NA NA NA ENOG411EA7X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAR1 DNA-binding domain Os05g0370100 protein (Fragment),Os02g0668200 protein A0A0P0WLI0,A0A0N7KFU7 A0A0P0WLI0_ORYSJ,A0A0N7KFU7_ORYSJ Os05g0370100 OSNPB_050370100,Os02g0668200 OSNPB_020668200 ENOG411EA7V NAC69,NAC68,NAC067,NTM1 Q9M126,A8MQY1,O82593,A0A1P8B857,A0A1P8B858,F4JI38 NAC69_ARATH,NAC68_ARATH,O82593_ARATH,A0A1P8B857_ARATH,A0A1P8B858_ARATH,F4JI38_ARATH NAC domain-containing protein 69 (ANAC069) (Protein NAC WITH TRANSMEMBRANE MOTIF 2) (Protein NTM1-like 13),NAC domain-containing protein 68 (ANAC068) (Protein NAC WITH TRANSMEMBRANE MOTIF 1) (Protein NTM1-like 12),F11O4.3 (NAC domain containing protein 67) (Putative NAM-like protein),NAC with transmembrane motif1 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions, but mutant plants mutant exhibit reduced sensitivity to high salinity during seed germination and seedling development. {ECO:0000269|PubMed:21450938}. Reduced growth; serrated leaves. Long hypocotyl-C. Park-2006 FUNCTION: Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.,FUNCTION: Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}. 51816,53599,34507,44575,47529,48237 NAC domain-containing protein 69 (ANAC069) (Protein NAC WITH TRANSMEMBRANE MOTIF 2) (Protein NTM1-like 13),NAC domain-containing protein 68 (ANAC068) (Protein NAC WITH TRANSMEMBRANE MOTIF 1) (Protein NTM1-like 12),F11O4.3 (NAC domain containing protein 67) (Putative NAM-like protein),NAC with transmembrane motif1 integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; positive regulation of transcription, DNA-templated [GO:0045893]; transcription, DNA-templated [GO:0006351],endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cytokinin-activated signaling pathway [GO:0009736]; leaf morphogenesis [GO:0009965]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of cell division [GO:0051302]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcription, DNA-templated [GO:0006351],integral component of membrane [GO:0016021]; nucleus [GO:0005634]; DNA binding [GO:0003677]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2116982;,locus:2116972;,locus:2117017; AT4G01550,AT4G01540,AT4G01520 NAC domain containing protein 69 NA NA NA NA NA NA NA ENOG411EA7U ''cytochrome P450,CYP706A1 O49652,F4JLY4,F4JQL6 O49652_ARATH,F4JLY4_ARATH,F4JQL6_ARATH Cytochrome P450 - like protein (Cytochrome P450, family 706, subfamily A, polypeptide 2) (Cytochrome P450-like protein),Cytochrome P450, family 706, subfamily A, polypeptide 1,Cytochrome P450 superfamily protein ARA:AT4G22710-MONOMER; 59426,63117,13098 Cytochrome P450 - like protein (Cytochrome P450, family 706, subfamily A, polypeptide 2) (Cytochrome P450-like protein),Cytochrome P450, family 706, subfamily A, polypeptide 1,Cytochrome P450 superfamily protein Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],cell wall [GO:0005618]; Golgi apparatus [GO:0005794]; mitochondrion [GO:0005739]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550],membrane [GO:0016020]; heme binding [GO:0020037]; iron ion binding [GO:0005506]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; secondary metabolite biosynthetic process [GO:0044550] locus:2132614;,locus:2132594;,locus:4515103378; AT4G22710,AT4G22690,AT4G12334 Cytochrome P450 NA NA NA NA NA NA NA ENOG411EA7S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 Beta-glucosidase 12 (Os4bglu12) (EC 3.2.1.21),Beta-glucosidase 13 (Os4bglu13) (EC 3.2.1.21),Os04g0474800 protein (Fragment) Q7XKV4,Q7XKV2,A0A0P0WB96 BGL12_ORYSJ,BGL13_ORYSJ,A0A0P0WB96_ORYSJ BGLU12 Os04g0474800 LOC_Os04g39880 OsJ_15166 OSJNBa0022H21.3,BGLU13 Os04g0474900 LOC_Os04g39900 OsJ_15167 OSJNBa0022H21.5,Os04g0474800 OSNPB_040474800 FUNCTION: Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, cello-oligosaccharides and laminaribiose. {ECO:0000269|PubMed:17196101}. ENOG411EA7Q GLR2.6 Q9LFN8 GLR26_ARATH Glutamate receptor 2.6 (Ligand-gated ion channel 2.6) FUNCTION: Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. R-ATH-399710;R-ATH-438066;R-ATH-451307;R-ATH-500657; 108965 Glutamate receptor 2.6 (Ligand-gated ion channel 2.6) integral component of membrane [GO:0016021]; intracellular [GO:0005622]; plasma membrane [GO:0005886]; calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]; calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230] TISSUE SPECIFICITY: Expressed predominantly in roots. {ECO:0000269|PubMed:12082126}. AT5G11180 Receptor family ligand binding region NA NA NA NA NA NA NA ENOG411EA7I JAL12,JAL14,JAL16,JAL43,JAL13,JAL44,JAL48,JAL18,MBB18.8,MBB18.7 Q0WMR0,F4I837,O80735,Q9FFW7,Q9ZU13,Q9FFW6,Q9LTY2,O80737,A0A1P8BBZ9,A0A1P8APM0,A0A1P8BGF4,F4HTI1,A0A1P8ANS2,F4IBA0 JAL12_ARATH,JAL14_ARATH,JAL16_ARATH,JAL43_ARATH,JAL13_ARATH,JAL44_ARATH,JAL48_ARATH,JAL18_ARATH,A0A1P8BBZ9_ARATH,A0A1P8APM0_ARATH,A0A1P8BGF4_ARATH,F4HTI1_ARATH,A0A1P8ANS2_ARATH,F4IBA0_ARATH Jacalin-related lectin 12,Jacalin-related lectin 14,Jacalin-related lectin 16,Jacalin-related lectin 43,Jacalin-related lectin 13,Jacalin-related lectin 44,Jacalin-related lectin 48,Jacalin-related lectin 18,Mannose-binding lectin superfamily protein 50909,68877,59132,55441,53569,66439,67099,67006,58145,50837,52202,56229,65824,68340 Jacalin-related lectin 12,Jacalin-related lectin 14,Jacalin-related lectin 16,Jacalin-related lectin 43,Jacalin-related lectin 13,Jacalin-related lectin 44,Jacalin-related lectin 48,Jacalin-related lectin 18,Mannose-binding lectin superfamily protein carbohydrate binding [GO:0030246] locus:2034021;,locus:2206460;,locus:2823422;,locus:2159853;,locus:2034036;,locus:2159863;,locus:2158794;,locus:2195628;,locus:2008475;,locus:2034006; AT1G52120,AT1G57570,AT1G60095,AT5G38540,AT1G52130,AT5G38550,AT5G49870,AT1G60130,AT1G61230,AT1G52110 Jacalin NA NA NA NA NA NA NA ENOG411EA7H Q9LFE7 Q9LFE7_ARATH Glycosyl hydrolase superfamily protein (Uncharacterized protein F5E19_40) 54826 Glycosyl hydrolase superfamily protein (Uncharacterized protein F5E19_40) hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2149005; AT5G16700 (glycosyl hydrolase family 5) protein NA NA NA NA NA NA NA ENOG411EA7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Microspherule protein 1 NA NA NA NA NA NA NA ENOG411EA7B MPF21.16 Q9FG97,A0A1P8BDH3,F4K1T9 Q9FG97_ARATH,A0A1P8BDH3_ARATH,F4K1T9_ARATH Ankyrin repeat family protein (Ankyrin-like protein),Ankyrin repeat family protein 59140,38137,52284 Ankyrin repeat family protein (Ankyrin-like protein),Ankyrin repeat family protein integral component of membrane [GO:0016021]; membrane [GO:0016020]; signal transduction [GO:0007165],integral component of membrane [GO:0016021] locus:2170081;,locus:2157548; AT5G50140,AT5G54700 Ankyrin repeat NA NA NA NA NA NA NA ENOG411EA7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Amino acid permease NA NA NA NA NA NA NA ENOG411EA70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase NA NA NA NA NA NA NA ENOG411E59T Q8L623 Q8L623_ARATH Transmembrane protein (Uncharacterized protein At4g34560) 25284 Transmembrane protein (Uncharacterized protein At4g34560) integral component of membrane [GO:0016021] locus:2139524; AT4G34560 NA NA NA NA NA NA NA NA ENOG411E59X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: PGAP1-like protein NA NA NA NA NA NA NA ENOG411E59C Q494N8,O82308 Q494N8_ARATH,O82308_ARATH Oleosin 16137,19215 Oleosin integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511]; lipid storage [GO:0019915],integral component of membrane [GO:0016021]; monolayer-surrounded lipid storage body [GO:0012511] locus:2043470; AT2G25890 oleosin 16 kDa-like NA NA NA NA NA NA NA ENOG411E59B Q93VM6 Q93VM6_ARATH AT4g39900/T5J17_70 (Adenine deaminase) (Uncharacterized protein At4g39900) 27174 AT4g39900/T5J17_70 (Adenine deaminase) (Uncharacterized protein At4g39900) integral component of membrane [GO:0016021] locus:2140060; AT4G39900 NA NA NA NA NA NA NA NA ENOG411E59G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cleavage site for pathogenic type III effector avirulence factor Avr Os06g0636100 protein A0A0P0WZI9 A0A0P0WZI9_ORYSJ Os06g0636100 OSNPB_060636100 ENOG411E59H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Myb-like DNA-binding domain Os06g0173800 protein Q5SNB3 Q5SNB3_ORYSJ OSJNBa0014B15.33 Os06g0173800 OSNPB_060173800 ENOG411E59N Q6IDB3 Q6IDB3_ARATH Actin T1-like protein (At3g09860) (Uncharacterized protein At3g09860) 12099 Actin T1-like protein (At3g09860) (Uncharacterized protein At3g09860) locus:2085109; AT3G09860 NA NA NA NA NA NA NA NA ENOG411E590 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Heavy-metal-associated domain Os05g0534500 protein Q6I5G4 Q6I5G4_ORYSJ Os05g0534500 OSJNBa0053E05.22 OSNPB_050534500 ENOG411E599 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 NA NA NA NA NA NA NA ENOG411E598 MRN17.10 Q8VZ13,Q9FFC1 Y1816_ARATH,Q9FFC1_ARATH Uncharacterized protein At1g08160,Gb|AAF18257.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) 25158,23607 Uncharacterized protein At1g08160,Gb|AAF18257.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) integral component of membrane [GO:0016021] locus:2205180;,locus:2172681; AT1G08160,AT5G22870 harpin-induced protein-related HIN1-related harpin-responsive protein-related Harpin-induced protein 1 containing protein, expressed (Os10g0547200 protein) (cDNA clone:006-309-A10, full insert sequence) Q336V2 Q336V2_ORYSJ LOC_Os10g39970 Os10g0547200 OsJ_32356 OSNPB_100547200 ENOG411E1SH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA B3 B3 domain-containing protein Os03g0120900 Q8LMR9 Y3209_ORYSJ Os03g0120900 LOC_Os03g02900 OJ1705B08.4 ENOG411ECF9 A0A1P8B5J6,F4JT78,F4JT79 A0A1P8B5J6_ARATH,F4JT78_ARATH,F4JT79_ARATH Uncharacterized protein,Nucleoside-triphosphatase/transmembrane receptor/nucleotide binding/ATP binding protein 16446,148976,89371 Uncharacterized protein,Nucleoside-triphosphatase/transmembrane receptor/nucleotide binding/ATP binding protein integral component of membrane [GO:0016021]; ADP binding [GO:0043531]; signal transduction [GO:0007165] locus:2122955; AT4G19500 ATP binding nucleoside-triphosphatase nucleotide binding protein binding transmembrane receptor NA NA NA NA NA NA NA ENOG411DXTH Q9LNC0 PPR16_ARATH Pentatricopeptide repeat-containing protein At1g06270 38934 Pentatricopeptide repeat-containing protein At1g06270 intracellular membrane-bounded organelle [GO:0043231]; plastid membrane [GO:0042170]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2038525; AT1G06270 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411DXTB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Disease resistance protein Os02g0456800 protein (Putative pollen signalling protein with adenylyl cyclase activity) Q6K3A0 Q6K3A0_ORYSJ Os02g0456800 OsJ_06614 OSJNBa0063K04.30 OSNPB_020456800 ENOG411DXTY ZOP1 Q7XA66,F4I3B2,F4I3B1 ZOP1_ARATH,F4I3B2_ARATH,F4I3B1_ARATH Zinc finger protein ZOP1 (Zinc-finger and OCRE domain-containing protein 1),C2H2 and C2HC zinc fingers superfamily protein FUNCTION: Nucleic acid-binding protein that promotes Pol IV-dependent small interfering RNA (siRNA) accumulation, DNA methylation and transcriptional silencing. May possess both RNA-directed DNA methylation (RdDM)-dependent and -independent roles in transcriptional silencing. Acts as a pre-mRNA splicing factor that associates with several typical components of the splicing machinery as well as with Pol II. {ECO:0000269|PubMed:23524848}. R-ATH-72163; 27052,12000,16704 Zinc finger protein ZOP1 (Zinc-finger and OCRE domain-containing protein 1),C2H2 and C2HC zinc fingers superfamily protein Cajal body [GO:0015030]; spliceosomal complex [GO:0005681]; double-stranded DNA binding [GO:0003690]; double-stranded RNA binding [GO:0003725]; zinc ion binding [GO:0008270]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380]; RNA-directed DNA methylation [GO:0080188]; seed germination [GO:0009845],nucleus [GO:0005634]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] locus:2012222; AT1G49590 U1 zinc finger Formin-binding protein-related-like (Os06g0215200 protein) (cDNA clone:J013038O15, full insert sequence),Os06g0215200 protein,Os06g0215200 protein (Fragment) Q69Y13,A0A0P0WUL2,A0A0P0WU00 Q69Y13_ORYSJ,A0A0P0WUL2_ORYSJ,A0A0P0WU00_ORYSJ P0537F07.21-1 Os06g0215200 OsJ_20587 OSNPB_060215200,Os06g0215200 OSNPB_060215200 ENOG411DXTW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA F-box domain F-box family protein-like (Os01g0806200 protein) (cDNA clone:001-112-H09, full insert sequence) Q5VR67 Q5VR67_ORYSJ Os01g0806200 OSNPB_010806200 P0702B09.3 ENOG411DXTQ Q5Q0B6,F4JLQ2 Q5Q0B6_ARATH,F4JLQ2_ARATH Transmembrane protein 30621,92369 Transmembrane protein integral component of membrane [GO:0016021],endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] locus:2130165; AT4G16180 NA Os03g0310500 protein (Fragment) Q0DSF8 Q0DSF8_ORYSJ Os03g0310500 OSNPB_030310500 ENOG411DXTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRAN NA NA NA NA NA NA NA ENOG411DXT8 Q9LPC8 Q9LPC8_ARATH F22M8.6 protein (Uncharacterized protein At1g01930) (Uncharacterized protein At1g01930/F22M8_5) (Zinc finger protein-like protein) 65260 F22M8.6 protein (Uncharacterized protein At1g01930) (Uncharacterized protein At1g01930/F22M8_5) (Zinc finger protein-like protein) Cdc48p-Npl4p-Vms1p AAA ATPase complex [GO:0036266]; nucleic acid binding [GO:0003676]; mitochondria-associated ubiquitin-dependent protein catabolic process [GO:0072671]; ubiquitin-dependent catabolism of misfolded proteins by nucleus-associated proteasome [GO:0071630]; ubiquitin-dependent ERAD pathway [GO:0030433] locus:2025487; AT1G01930 ankyrin repeat and zinc finger domain-containing protein 1-like Os04g0574600 protein (cDNA clone:J023132O07, full insert sequence) Q0JAV4 Q0JAV4_ORYSJ Os04g0574600 Os04g0574600 OsJ_15857 OSNPB_040574600 ENOG411DXT7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA short chain dehydrogenase Os12g0633800 protein (Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed) Q2QLP7 Q2QLP7_ORYSJ Os12g0633800 LOC_Os12g43740 OSNPB_120633800 ENOG411DXT0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Fimbrin-like protein Os01g0514600 protein (Putative plastin 3) Q5QMW7 Q5QMW7_ORYSJ Os01g0514600 Os01g0514600 B1075D06.5 OsJ_01995 OSNPB_010514600 ENOG411EIB8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosomal protein L14p/L23e NA NA NA NA NA NA NA ENOG411EIB9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIB1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIB2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CRS1 / YhbY (CRM) domain NA NA NA NA NA NA NA ENOG411EIBM ; P92516 M750_ARATH Uncharacterized mitochondrial protein AtMg00750 (ORF119) MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated gene (At2g07686) is not demonstrated. 13871 Uncharacterized mitochondrial protein AtMg00750 (ORF119) mitochondrion [GO:0005739] locus:504954558; AT2G07686ATMG00750; Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIBN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIBH Q8L8Z4 Q8L8Z4_ARATH At5g24313 (Transmembrane protein) (Uncharacterized protein At5g24313) 9097 At5g24313 (Transmembrane protein) (Uncharacterized protein At5g24313) integral component of membrane [GO:0016021] locus:505006634; AT5G24313 NA NA NA NA NA NA NA NA ENOG411EIBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0110200 protein (Putative extensin-like cell wall protein) Q657S4 Q657S4_ORYSJ Os01g0110200 Os01g0110200 OSNPB_010110200 P0439B06.5 ENOG411EIBJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribosome inactivating protein rRNA N-glycosidase (EC 3.2.2.22) Q6K2U8 Q6K2U8_ORYSJ Os09g0120600 OJ1512_E04.44 OSJNBa0018I03.17 OSNPB_090120600 ENOG411EIBK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 NA NA NA NA NA NA NA ENOG411EIBD Q8L9S9 Q8L9S9_ARATH Transmembrane protein 13286 Transmembrane protein integral component of membrane [GO:0016021] locus:505006560; AT4G35725 NA NA NA NA NA NA NA NA ENOG411EIBE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os01g0653300 protein Q5VPB5 Q5VPB5_ORYSJ Os01g0653300 OsJ_02850 OSJNBb0006H05.8 OSJNBb0032K15.27 OSNPB_010653300 ENOG411EIBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CS domain NA NA NA NA NA NA NA ENOG411EIBG RALFL17 O48776 RLF17_ARATH Protein RALF-like 17 FUNCTION: Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). {ECO:0000250}. 8377 Protein RALF-like 17 apoplast [GO:0048046]; intracellular [GO:0005622]; hormone activity [GO:0005179]; signal transducer activity [GO:0004871]; calcium-mediated signaling [GO:0019722]; cell-cell signaling [GO:0007267] locus:2059418; AT2G32890 NA NA NA NA NA NA NA NA ENOG411EIBA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIBB Q9FFR7 FBL87_ARATH Putative F-box/LRR-repeat protein At5g41630 52306 Putative F-box/LRR-repeat protein At5g41630 locus:2160492; AT5G41630 NA NA NA NA NA NA NA NA ENOG411EIBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIBX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain NA NA NA NA NA NA NA ENOG411EIBQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DVB4 TFIIS Q9ZVH8 RDO2_ARATH Transcription elongation factor TFIIS (Protein REDUCED DORMANCY 2) DISRUPTION PHENOTYPE: Reduced seed dormancy and increased germination rate of freshly harvested seeds (PubMed:19150360, PubMed:21799800). Early flowering (PubMed:19150360). {ECO:0000269|PubMed:19150360, ECO:0000269|PubMed:21799800}. reduced dormancy; does not require GA; high capacity for dark germination; reduced sensitivity to GA biosynthesis inhibitor tetcyclacis; freshly harvested seeds will germinate; embryo determined (not a maternal effect).,Double mutant reduced seed dormancy determined by the embryo; increased ability to germinate as freshly harvested seeds compared to each of the monogenic mutants; cumulative effect of the individual mutations suggest that they control different pathways; high capacity to germinate in darkness.,slightly earlier flowering time; reduced seed dormancy. Reduced seed dormancy; Slightly early flowering-K. Grasser-2009 FUNCTION: Necessary for efficient RNA polymerase II transcription elongation past template-encoded arresting sites (Probable). Involved in the control of seed dormancy and germination (PubMed:19150360, PubMed:21799800). {ECO:0000269|PubMed:19150360, ECO:0000269|PubMed:21799800, ECO:0000305}. R-ATH-6781823;R-ATH-6782135;R-ATH-6782210;R-ATH-6796648; 41979 Transcription elongation factor TFIIS (Protein REDUCED DORMANCY 2) nucleus [GO:0005634]; translation elongation factor activity [GO:0003746]; zinc ion binding [GO:0008270]; negative regulation of flower development [GO:0009910]; regulation of transcription elongation from RNA polymerase II promoter [GO:0034243]; response to gibberellin [GO:0009739]; seed dormancy process [GO:0010162]; seed germination [GO:0009845]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in roots, leaves and flowers. {ECO:0000269|PubMed:19150360}. locus:2064195; AT2G38560 Transcription elongation factor Os07g0229700 protein (cDNA clone:J033126I22, full insert sequence),Os03g0815900 protein (Putative transcription elongation factor) (Transcription elongation factor S-II family protein, expressed) Q0D7N2,Q84TW3 Q0D7N2_ORYSJ,Q84TW3_ORYSJ Os07g0229700 Os07g0229700 OSNPB_070229700,Os03g0815900 LOC_Os03g60130 Os03g0815900 OsJ_13099 OSJNBa0094J08.31 OSNPB_030815900 ENOG411DVBT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Hexosyltransferase (EC 2.4.1.-) (Fragment) Q0DN33 Q0DN33_ORYSJ Os03g0777600 Os03g0777600 OSNPB_030777600 ENOG411DVBW FIM2 O50064 FIMB2_ARATH Fimbrin-2 (AtFIM2) (Fimbrin2) FUNCTION: Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus. {ECO:0000250|UniProtKB:Q7G188}. 73665 Fimbrin-2 (AtFIM2) (Fimbrin2) actin filament [GO:0005884]; actin filament bundle [GO:0032432]; cytoplasm [GO:0005737]; actin filament binding [GO:0051015]; actin crosslink formation [GO:0051764]; actin filament bundle assembly [GO:0051017]; actin filament network formation [GO:0051639] locus:2166096; AT5G48460 Fimbrin-like protein NA NA NA NA NA NA NA ENOG411DVBP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plant phosphoribosyltransferase C-terminal Os02g0663900 protein (Putative anthranilate phosphoribosyltransferase) (cDNA clone:J023002F11, full insert sequence) Q6EUH5 Q6EUH5_ORYSJ Os02g0663900 OJ1001_D02.31 OsJ_07837 OSNPB_020663900 ENOG411DVBQ Q9ASS4 Y5838_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 cell death and constitutive defense response 69142 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; receptor serine/threonine kinase binding [GO:0033612]; defense response to bacterium [GO:0042742]; negative regulation of cell death [GO:0060548]; negative regulation of defense response [GO:0031348] locus:2165981; AT5G48380 probably inactive leucine-rich repeat receptor-like protein kinase Os05g0414700 protein (Putative systemin receptor SR160),Os11g0249900 protein (Fragment) Q6AUA1,Q0ITI9,A0A0P0Y0P8 Q6AUA1_ORYSJ,Q0ITI9_ORYSJ,A0A0P0Y0P8_ORYSJ Os05g0414700 OJ1123_C08.6 OsJ_18551 OSNPB_050414700 P0017D10.20,Os11g0249900 OSNPB_110249900 ENOG411DVBY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA KR domain Os04g0531700 protein (Fragment),OSJNBa0081C01.23 protein (OSJNBb0039L24.4 protein) (Os04g0532100 protein) (cDNA clone:002-188-B09, full insert sequence) Q0JBH4,Q7X779 Q0JBH4_ORYSJ,Q7X779_ORYSJ Os04g0531700 Os04g0531700 OSNPB_040531700,Os04g0532100 OSJNBa0081C01.23 OSJNBb0039L24.4 OSNPB_040532100 ENOG411DVBZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_ZZ NA NA NA NA NA NA NA ENOG411DVBG Q8LF02,F4IF29 Q8LF02_ARATH,F4IF29_ARATH At1g73090 (WD repeat protein),WD repeat protein 34687,38072 At1g73090 (WD repeat protein),WD repeat protein locus:2032743; AT1G73090 NA NA NA NA NA NA NA NA ENOG411ECF3 TPS16 Q9LVP7 TPS16_ARATH Putative terpenoid synthase 16 (AtTPS16) (EC 4.2.3.-) PATHWAY: Secondary metabolite biosynthesis; terpenoid biosynthesis. ARA:AT3G29110-MONOMER; 4.2.3.- 68541 Putative terpenoid synthase 16 (AtTPS16) (EC 4.2.3.-) cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; terpene synthase activity [GO:0010333]; terpenoid biosynthetic process [GO:0016114] AT3G29110 Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411DVBB WEB1 O48724 WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (Protein WEB1) DISRUPTION PHENOTYPE: Deficient chloroplast response. {ECO:0000269|PubMed:20974974}. Abnormal light-responsive chloroplast movement-M. Wada-2010 FUNCTION: Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation. {ECO:0000269|PubMed:20974974}. 89294 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (Protein WEB1) cytosol [GO:0005829]; plasma membrane [GO:0005886]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903] TISSUE SPECIFICITY: Ubiquitous but preferentially in chloroplast-containing tissues. {ECO:0000269|PubMed:20974974}. locus:2066301; AT2G26570 Pfam:DUF827 Myosin heavy chain-like (Os07g0619100 protein),Os03g0395300 protein (Paramyosin, putative, expressed) (Putative myosin heavy chain-like) (cDNA clone:J023104J05, full insert sequence) Q8LHQ6,Q94LH1 Q8LHQ6_ORYSJ,Q94LH1_ORYSJ P0560B08.109 Os07g0619100 OSNPB_070619100,Os03g0395300 LOC_Os03g27800 Os03g0395300 OsJ_11145 OSJNBb0004M10.7 OSNPB_030395300 ENOG411DVBN PHOT1,PHOT2 O48963,P93025,F4KDJ3,A8MS49 PHOT1_ARATH,PHOT2_ARATH,F4KDJ3_ARATH,A8MS49_ARATH Phototropin-1 (EC 2.7.11.1) (Non-phototropic hypocotyl protein 1) (Root phototropism protein 1),Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast avoidance protein 1) (Non-phototropic hypocotyl 1-like protein 1) (AtKin7) (NPH1-like protein 1),Phototropin 2 DISRUPTION PHENOTYPE: Enhanced drought tolerance, when associated with PHOT2 disruption. {ECO:0000269|PubMed:20031924}. Reduced phototropism-W. Briggs-1995,Complete loss of chloroplast movement in response to light; Heterozygotes: Slow chloroplast movement in response to light-T. Kagawa-2009 FUNCTION: Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for photo-induced movements. Phosphorylates BLUS1, a kinase involved in stomatal opening. Required for blue light mediated mRNA destabilization. Mediates calcium spiking of extracellular origin in response to a low rate of blue light. Also mediates rapid membrane depolarization and growth inhibition in response to blue light. Necessary for root phototropism. Involved in hypocotyl phototropism under a low rate but not under a high rate of blue light. Contributes to the chloroplast accumulation but seems not to be required for chloroplast translocation. Regulates stomata opening and photomorphogenesis response of leaf tissue. Confers sensitivity to drought. Not involved in hypocotyl elongation inhibition, anthocyanin accumulation or cotyledon opening. {ECO:0000269|PubMed:10662859, ECO:0000269|PubMed:11439133, ECO:0000269|PubMed:12650626, ECO:0000269|PubMed:12821778, ECO:0000269|PubMed:14982991, ECO:0000269|PubMed:15031408, ECO:0000269|PubMed:16777956, ECO:0000269|PubMed:20031924, ECO:0000269|PubMed:23811955}.,FUNCTION: Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for photo-induced movements. Phosphorylates BLUS1, a kinase involved in stomatal opening. Mediates calcium spiking of extra- and intracellular origins in response to blue light. Involved in hypocotyl phototropism. Contributes to the chloroplast accumulation in low blue light and mediates their translocation (avoidance response) at high fluence. Regulates stomata opening and photomorphogenesis response of leaf tissue. Not involved in hypocotyl elongation inhibition, anthocyanin accumulation or cotyledon opening. {ECO:0000269|PubMed:11251116, ECO:0000269|PubMed:11371609, ECO:0000269|PubMed:12821778, ECO:0000269|PubMed:14982991, ECO:0000269|PubMed:15031408, ECO:0000269|PubMed:23811955}. MISCELLANEOUS: Undergoes a photocycle characterized by fluorescence and absorption changes induced by blue light. Half-time of photoproduct formation is 14 seconds and 70 seconds for dark regeneration.,MISCELLANEOUS: Undergoes a photocycle characterized by fluorescence and absorption changes induced by blue light. Half-time of photoproduct formation is 11 seconds and 15 seconds for dark regeneration. 2.7.11.1; 2.7.11.1 111689,102472,77360,100789 Phototropin-1 (EC 2.7.11.1) (Non-phototropic hypocotyl protein 1) (Root phototropism protein 1),Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast avoidance protein 1) (Non-phototropic hypocotyl 1-like protein 1) (AtKin7) (NPH1-like protein 1),Phototropin 2 cell surface [GO:0009986]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; nucleus [GO:0005634]; vacuole [GO:0005773]; ATP binding [GO:0005524]; blue light photoreceptor activity [GO:0009882]; FMN binding [GO:0010181]; identical protein binding [GO:0042802]; kinase activity [GO:0016301]; mRNA binding [GO:0003729]; phosphorelay sensor kinase activity [GO:0000155]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]; circadian rhythm [GO:0007623]; intracellular signal transduction [GO:0035556]; negative regulation of anion channel activity by blue light [GO:0010362]; phototropism [GO:0009638]; protein autophosphorylation [GO:0046777]; protein-chromophore linkage [GO:0018298]; regulation of proton transport [GO:0010155]; regulation of stomatal movement [GO:0010119]; response to blue light [GO:0009637],Golgi apparatus [GO:0005794]; membrane [GO:0016020]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; blue light photoreceptor activity [GO:0009882]; FMN binding [GO:0010181]; identical protein binding [GO:0042802]; kinase activity [GO:0016301]; phosphorelay sensor kinase activity [GO:0000155]; protein serine/threonine kinase activity [GO:0004674]; chloroplast relocation [GO:0009902]; circadian rhythm [GO:0007623]; intracellular signal transduction [GO:0035556]; negative regulation of anion channel activity by blue light [GO:0010362]; phototropism [GO:0009638]; protein autophosphorylation [GO:0046777]; protein-chromophore linkage [GO:0018298]; response to blue light [GO:0009637]; response to cytokinin [GO:0009735]; stomatal movement [GO:0010118],intracellular [GO:0005622]; ATP binding [GO:0005524]; phosphorelay sensor kinase activity [GO:0000155] TISSUE SPECIFICITY: Expressed in leaves, stems and flowers, and to a lower extent in roots. {ECO:0000269|PubMed:11251116}. locus:2102674;,locus:2155821; AT3G45780,AT5G58140 blue light photoreceptor Phototropin-1A (EC 2.7.11.1) (Non-phototropic hypocotyl protein 1A) (OsNPH1a),Phototropin-1B (EC 2.7.11.1),Os12g0101800 protein,Os12g0101800 protein (Fragment) Q2QYY8,Q2RBR1,A0A0P0Y5T3,A0A0N7KTF2 PHT1A_ORYSJ,PHT1B_ORYSJ,A0A0P0Y5T3_ORYSJ,A0A0N7KTF2_ORYSJ PHOT1A Os12g0101800 LOC_Os12g01140,PHOT1B Os11g0102200 LOC_Os11g01140,Os12g0101800 OSNPB_120101800 FUNCTION: Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion (By similarity). {ECO:0000250}. MISCELLANEOUS: Undergoes a photocycle characterized by fluorescence and absorption changes induced by blue light. ENOG411DVBH A0A1I9LMF6,A0A1I9LMF5,F4IZL5 A0A1I9LMF6_ARATH,A0A1I9LMF5_ARATH,F4IZL5_ARATH Zinc finger (C3HC4-type RING finger) family protein R-ATH-110320; 26995,28528,32390 Zinc finger (C3HC4-type RING finger) family protein zinc ion binding [GO:0008270] locus:2099212; AT3G62970 RING finger and CHY zinc finger domain-containing protein NA NA NA NA NA NA NA ENOG411EMM5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Sec23/Sec24 beta-sandwich domain OJ000126_13.4 protein (Os04g0412900 protein) Q7X6L6 Q7X6L6_ORYSJ Os04g0412900 Os04g0412900 OJ000126_13.4 OSNPB_040412900 ENOG411EMM6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger CCCH domain-containing protein NA NA NA NA NA NA NA ENOG411EHAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E3V1 LOG2 Q5BPS0,F4ILS7 LOG2_ARATH,F4ILS7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 (EC 3.2.2.n1) (Protein LONELY GUY 2),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1) DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions; due to the redundancy with other LOG proteins. {ECO:0000269|PubMed:19837870}. FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000269|PubMed:19837870}.,FUNCTION: Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms. {ECO:0000256|RuleBase:RU363015}. ARA:GQT-1068-MONOMER; 3.2.2.n1 23314,17616 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 (EC 3.2.2.n1) (Protein LONELY GUY 2),Cytokinin riboside 5'-monophosphate phosphoribohydrolase (EC 3.2.2.n1) cytosol [GO:0005829]; nucleus [GO:0005634]; hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691],hydrolase activity [GO:0016787]; cytokinin biosynthetic process [GO:0009691] TISSUE SPECIFICITY: Expressed in roots and shoots. Detected in root hairs. {ECO:0000269|PubMed:19837870}. locus:2039175; AT2G35990 Possible lysine decarboxylase NA NA NA NA NA NA NA ENOG411DYJ7 Q8GUM8 Q8GUM8_ARATH At1g17330 (Metal-dependent phosphohydrolase) (Uncharacterized protein At1g17330) 25503 At1g17330 (Metal-dependent phosphohydrolase) (Uncharacterized protein At1g17330) hydrolase activity [GO:0016787] locus:2029111; AT1G17330 HDc HD domain containing protein, expressed (Os10g0486000 protein) (cDNA clone:J023052E08, full insert sequence),Os10g0486000 protein (Fragment),Os10g0486000 protein Q337J5,A0A0P0XVJ1,A0A0P0XVU5 Q337J5_ORYSJ,A0A0P0XVJ1_ORYSJ,A0A0P0XVU5_ORYSJ LOC_Os10g34470 Os10g0486000 OSNPB_100486000,Os10g0486000 OSNPB_100486000 ENOG411DYJ6 A0A1P8AQT5,Q8GY12,Q9SSP8,F4IEJ8,Q9LW14,A0A1P8AQU9,A0A1P8AR10,A0A1I9LM47,F4J010 A0A1P8AQT5_ARATH,Q8GY12_ARATH,Q9SSP8_ARATH,F4IEJ8_ARATH,Q9LW14_ARATH,A0A1P8AQU9_ARATH,A0A1P8AR10_ARATH,A0A1I9LM47_ARATH,F4J010_ARATH Alpha/beta-Hydrolases superfamily protein,Alpha/beta-Hydrolases superfamily protein (At1g52693),Alpha/beta-Hydrolases superfamily protein (F6D8.34 protein),Alpha/beta-Hydrolases superfamily protein (At3g15650) (Lysophospholipase-like protein) (Putative lysophospholipase) 27475,25329,21836,21693,27589,26510,21809,28735,29614 Alpha/beta-Hydrolases superfamily protein,Alpha/beta-Hydrolases superfamily protein (At1g52693),Alpha/beta-Hydrolases superfamily protein (F6D8.34 protein),Alpha/beta-Hydrolases superfamily protein (At3g15650) (Lysophospholipase-like protein) (Putative lysophospholipase) hydrolase activity [GO:0016787],cytoplasm [GO:0005737]; carboxylic ester hydrolase activity [GO:0052689]; palmitoyl-(protein) hydrolase activity [GO:0008474]; protein depalmitoylation [GO:0002084] locus:1005716739;,locus:2035164;,locus:2035064;,locus:2093282; AT1G52695,AT1G52440,AT1G52700,AT3G15650 acyl-protein thioesterase 2-like NA NA NA NA NA NA NA ENOG411DYJ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Signal peptidase peptidase S26 Os03g0765200 protein (Signal peptidase I family protein, expressed),Os03g0765200 protein (Putative chloroplast thylakoidal processing peptidase) (Signal peptidase I family protein, expressed) Q10EN6,Q7Y0D0 Q10EN6_ORYSJ,Q7Y0D0_ORYSJ Os03g0765200 LOC_Os03g55640 OSNPB_030765200,OSJNBa0079B15.23 LOC_Os03g55640 Os03g0765200 OSNPB_030765200 ENOG411DYJ4 MJJ3.26 Q9FFJ4 Q9FFJ4_ARATH Emb|CAB81597.1 (Replication factor C subunit, putative (DUF620)) 48863 Emb|CAB81597.1 (Replication factor C subunit, putative (DUF620)) locus:2166414; AT5G05840 Protein of unknown function (DUF620) Lipase, putative, expressed (Os03g0267500 protein) (cDNA clone:001-038-H10, full insert sequence) (cDNA clone:J013033K02, full insert sequence) Q10NJ9 Q10NJ9_ORYSJ Os03g0267500 LOC_Os03g16060 Os03g0267500 OSNPB_030267500 ENOG411DYJ3 Q8RWC3 Q8RWC3_ARATH Aminopeptidase (DUF3754) (Uncharacterized protein At3g19340) 56788 Aminopeptidase (DUF3754) (Uncharacterized protein At3g19340) endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; aminopeptidase activity [GO:0004177] locus:2090639; AT3G19340 expressed protein Os01g0929000 protein (cDNA clone:J033024D22, full insert sequence),Expressed protein (Os12g0479900 protein),Expressed protein (Os11g0528400 protein) (cDNA clone:J023022D15, full insert sequence) Q5JK37,Q2QQX3,Q2R3B7 Q5JK37_ORYSJ,Q2QQX3_ORYSJ,Q2R3B7_ORYSJ Os01g0929000 OSJNBa0052O12.17 OSNPB_010929000,LOC_Os12g29550 Os12g0479900 OsJ_36084 OSNPB_120479900,LOC_Os11g32490 Os11g0528400 OsJ_34097 OSNPB_110528400 ENOG411DYJ2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: containing protein Os04g0267600 protein (cDNA clone:J023106E05, full insert sequence) Q0JEI7 Q0JEI7_ORYSJ Os04g0267600 Os04g0267600 OSNPB_040267600 ENOG411DYJ1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DYJ0 Q9SYB2,Q9M0X3 Q9SYB2_ARATH,Q9M0X3_ARATH Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein T13M11.12),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein AT4g05220) 25868,26035 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein T13M11.12),Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (Uncharacterized protein AT4g05220) anchored component of plasma membrane [GO:0046658]; integral component of membrane [GO:0016021]; plasmodesma [GO:0009506]; signal transducer activity [GO:0004871]; defense response [GO:0006952] locus:2195783;,locus:2115638; AT1G61760,AT4G05220 harpin-induced protein 1 domain containing protein expressed Os07g0531500 protein (cDNA, clone: J065122B10, full insert sequence) Q8GVN7 Q8GVN7_ORYSJ P0681F05.132 Os07g0531500 OsJ_24542 OSNPB_070531500 ENOG411DYJZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ATPase family associated with various cellular activities (AAA) AAA-type ATPase-like (Os06g0697600 protein) Q5Z6G1 Q5Z6G1_ORYSJ Os06g0697600 Os06g0697600 OsJ_22501 OSNPB_060697600 P0028E05.30 ENOG411DYJY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Serine carboxypeptidase S28 At2g24280/F27D4.19 (Os11g0156200 protein) (Serine carboxypeptidase S28 family protein, expressed) Q53ND8 Q53ND8_ORYSJ LOC_Os11g05760 Os11g0156200 OSNPB_110156200 ENOG411DYJW BAM3 O65440 BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 3) DISRUPTION PHENOTYPE: When associated with BAM1 and BAM2 disruptions, loss of stem cells at the shoot and flower meristems. {ECO:0000269|PubMed:16367950}. Plants arrest early in development due to loss of shoot apical meristem but recover through adventitious shoot formation.,Reduced numbers of stamens and carpels suggesting a reduction in floral meristem size. FUNCTION: Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. {ECO:0000269|PubMed:16367950}. 2.7.11.1 110283 Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 3) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; cell differentiation [GO:0030154]; floral organ development [GO:0048437]; regulation of meristem growth [GO:0010075] TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, inflorescences, flowers and siliques. {ECO:0000269|PubMed:16367950}. locus:2120412; AT4G20270 leucine-rich repeat receptor-like serine threonine-protein kinase NA NA NA NA NA NA NA ENOG411DYJV NANA Q9LTW4,F4J9V9,A0A1I9LP40 Q9LTW4_ARATH,F4J9V9_ARATH,A0A1I9LP40_ARATH Chloroplast nucleoid DNA binding protein-like (Eukaryotic aspartyl protease family protein),Eukaryotic aspartyl protease family protein FUNCTION: Aspartic proteinase that can use azocasein as substrate and regulates endogenous sugar levels (e.g. sucrose, glucose and fructose) by modulating starch accumulation and remobilization (PubMed:22987884). Involved in the maintenance of the shoot apical meristem (SAM) (PubMed:25752149). Influences general morphology and development (PubMed:22987884). {ECO:0000269|PubMed:22987884, ECO:0000269|PubMed:25752149}. 50568,29980,27150 Chloroplast nucleoid DNA binding protein-like (Eukaryotic aspartyl protease family protein),Eukaryotic aspartyl protease family protein chloroplast [GO:0009507]; aspartic-type endopeptidase activity [GO:0004190]; carbohydrate metabolic process [GO:0005975]; chloroplast-nucleus signaling pathway [GO:0010019]; protein catabolic process [GO:0030163],integral component of membrane [GO:0016021]; aspartic-type endopeptidase activity [GO:0004190],aspartic-type endopeptidase activity [GO:0004190] locus:2087790; AT3G12700 aspartic proteinase Chloroplast nucleoid DNA binding protein-like (Os01g0679550 protein),Os05g0557100 protein,Os01g0679500 protein Q5QM88,Q0DG23,Q5QM89 Q5QM88_ORYSJ,Q0DG23_ORYSJ,Q5QM89_ORYSJ Os01g0679550 B1144G04.38 OsJ_03009 OSNPB_010679550,Os05g0557100 Os05g0557100 OSNPB_050557100,Os01g0679500 B1144G04.37 OSNPB_010679500 ENOG411DYJU A0A1I9LR41,A0A1I9LR42,F4IXX2,F4IXX3 A0A1I9LR41_ARATH,A0A1I9LR42_ARATH,F4IXX2_ARATH,F4IXX3_ARATH Transducin/WD40 repeat-like superfamily protein 60399,84980,97725,99717 Transducin/WD40 repeat-like superfamily protein locus:2082976; AT3G49400 WD40 Os01g0702400 protein (Transducin family protein / WD-40 repeat family protein-like) Q5N9R6 Q5N9R6_ORYSJ Os01g0702400 Os01g0702400 OSNPB_010702400 P0421H07.11 ENOG411DYJT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA EamA-like transporter family WAT1-related protein Q10A36 Q10A36_ORYSJ Os10g0163130 LOC_Os10g07998 OSNPB_100163130 ENOG411DYJP LRR-RLK C0LGE4,Q9LQ11,A0A1P8APZ0 Y1124_ARATH,Q9LQ11_ARATH,A0A1P8APZ0_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1),F16P17.10 protein (Leucine-rich repeat receptor-like protein kinase) (Leucine-rich repeat transmembrane protein kinase family protein),Leucine-rich repeat protein kinase family protein 2.7.11.1 97022,98072,81586 Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1),F16P17.10 protein (Leucine-rich repeat receptor-like protein kinase) (Leucine-rich repeat transmembrane protein kinase family protein),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; membrane [GO:0016020]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2034725;,locus:2015504; AT1G12460,AT1G62950 LRR receptor-like serine threonine-protein kinase Leucine Rich Repeat family protein, expressed (Os10g0531700 protein) (Putative receptor-like protein kinase),Leucine-rich repeat transmembrane protein kinase, putative, expressed (Os03g0127700 protein) (cDNA clone:J033024D13, full insert sequence) Q8L4U4,Q8S5V3 Q8L4U4_ORYSJ,Q8S5V3_ORYSJ Os10g0531700 LOC_Os10g38800 Os10g0531700 OSJNBa0053C23.12 OSJNBb0038A07.18 OSNPB_100531700,Os03g0127700 LOC_Os03g03570 Os03g0127700 OJ1015F07.14 OsJ_09256 OSNPB_030127700 ENOG411DYJN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PTI1-like tyrosine-protein kinase At3g15890-like Os09g0531701 protein (Fragment) A0A0P0XQW9 A0A0P0XQW9_ORYSJ Os09g0531701 OSNPB_090531701 ENOG411DYJM Q9M8N0 Q9M8N0_ARATH At1g80630 (RNI-like superfamily protein) (Uncharacterized protein At1g80630) (Uncharacterized protein T21F11.4) 65504 At1g80630 (RNI-like superfamily protein) (Uncharacterized protein At1g80630) (Uncharacterized protein T21F11.4) locus:2198903; AT1G80630 LRR NA NA NA NA NA NA NA ENOG411DYJK HHP3,HHP2 Q9ZUH8,Q84N34,A0A1P8B2N4 HHP3_ARATH,HHP2_ARATH,A0A1P8B2N4_ARATH Heptahelical transmembrane protein 3 (PAQR family protein HHP3),Heptahelical transmembrane protein 2 (PAQR family protein HHP2),Heptahelical protein 3 FUNCTION: May play a role in abiotic stress response. {ECO:0000250}. 38853,41025,28080 Heptahelical transmembrane protein 3 (PAQR family protein HHP3),Heptahelical transmembrane protein 2 (PAQR family protein HHP2),Heptahelical protein 3 integral component of membrane [GO:0016021]; receptor activity [GO:0004872]; response to hormone [GO:0009725]; response to oxidative stress [GO:0006979]; response to sucrose [GO:0009744],integral component of membrane [GO:0016021]; receptor activity [GO:0004872]; response to hormone [GO:0009725]; response to sucrose [GO:0009744],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:16263907}.,TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and flowers. {ECO:0000269|PubMed:16263907}. locus:2047550;,locus:2126709; AT2G24150,AT4G30850 Receptor Heptahelical transmembrane protein ADIPOR2 (PAQR family protein ADIPOR2),Os06g0652200 protein (Fragment) Q6ETK9,A0A0N7KMI5 ADPO2_ORYSJ,A0A0N7KMI5_ORYSJ ADIPOR2 Os02g0179500 LOC_Os02g08320 P0544B02.25,Os06g0652200 OSNPB_060652200 FUNCTION: May play a role in abiotic stress response. {ECO:0000250}. ENOG411DYJI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA serine threonine-protein kinase Os01g0223900 protein (Putative S-domain receptor-like protein kinase) (cDNA clone:J033060M08, full insert sequence),Os01g0224000 protein (Putative S-domain receptor-like protein kinase),Os05g0252400 protein Q9LDT8,Q5NAQ9,B9FJP0 Q9LDT8_ORYSJ,Q5NAQ9_ORYSJ,B9FJP0_ORYSJ Os01g0223900 Os01g0223900 OsJ_00938 OSNPB_010223900 P0417G05.23 P0443E05.40,Os01g0224000 OsJ_00939 OSNPB_010224000 P0417G05.25 P0443E05.42,Os05g0252400 OsJ_17818 OSNPB_050252400 ENOG411DYJG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0623300 protein A0A0P0YC92 A0A0P0YC92_ORYSJ Os12g0623300 OSNPB_120623300 ENOG411DYJE UPL6 Q8RWB8,B3H5A6 UPL6_ARATH,B3H5A6_ARATH E3 ubiquitin-protein ligase UPL6 (Ubiquitin-protein ligase 6) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL6),Ubiquitin protein ligase 6 FUNCTION: Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.26 117662,116172 E3 ubiquitin-protein ligase UPL6 (Ubiquitin-protein ligase 6) (EC 2.3.2.26) (HECT-type E3 ubiquitin transferase UPL6),Ubiquitin protein ligase 6 cytoplasm [GO:0005737]; ubiquitin protein ligase activity [GO:0061630],ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842] locus:2087939; AT3G17205 ubiquitin-protein ligase Os05g0159000 protein Q5W724 Q5W724_ORYSJ Os05g0159000 Os05g0159000 OSJNBa0017J22.6 OSNPB_050159000 ENOG411DYJD GDH3,GDH1 Q9LQL0,P25855 GCSH3_ARATH,GCSH1_ARATH Glycine cleavage system H protein 3, mitochondrial,Glycine cleavage system H protein 1, mitochondrial FUNCTION: The glycine decarboxylase (GDC) or glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (By similarity). {ECO:0000250}.,FUNCTION: The glycine decarboxylase (GDC) or glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. ARA:AT2G35370-MONOMER;MetaCyc:AT2G35370-MONOMER; R-ATH-389661;R-ATH-6783984; 1.4.4.2; 17897,17947 Glycine cleavage system H protein 3, mitochondrial,Glycine cleavage system H protein 1, mitochondrial chloroplast [GO:0009507]; glycine cleavage complex [GO:0005960]; mitochondrion [GO:0005739]; glycine decarboxylation via glycine cleavage system [GO:0019464],chloroplast [GO:0009507]; glycine cleavage complex [GO:0005960]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; thylakoid [GO:0009579]; glycine decarboxylation via glycine cleavage system [GO:0019464] TISSUE SPECIFICITY: Highly expressed in leaves, lower expression in green veins, petioles, and stems, and detected in roots. {ECO:0000269|PubMed:7480320}. locus:2033802;,locus:2062435; AT1G32470,AT2G35370 Glycine cleavage system H protein Glycine cleavage system H protein, mitochondrial A3C6G9 GCSH_ORYSJ GDCSH Os10g0516100 LOC_Os10g37180 OsJ_030891 OSJNBa0026L12.1 OSJNBa0076F20.1 FUNCTION: The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (By similarity). {ECO:0000250}. ENOG411DYJC Q8VYI4,A0A1P8ANY1 Q8VYI4_ARATH,A0A1P8ANY1_ARATH Aspartate-semialdehyde dehydrogenase, putative (At1g14810/F10B6_6) (Semialdehyde dehydrogenase family protein),Semialdehyde dehydrogenase family protein ARA:AT1G14810-MONOMER;MetaCyc:AT1G14810-MONOMER; 40746,33239 Aspartate-semialdehyde dehydrogenase, putative (At1g14810/F10B6_6) (Semialdehyde dehydrogenase family protein),Semialdehyde dehydrogenase family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plastid [GO:0009536]; aspartate-semialdehyde dehydrogenase activity [GO:0004073]; N-acetyl-gamma-glutamyl-phosphate reductase activity [GO:0003942]; NAD binding [GO:0051287]; NADP binding [GO:0050661]; protein dimerization activity [GO:0046983]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088],cytoplasm [GO:0005737]; N-acetyl-gamma-glutamyl-phosphate reductase activity [GO:0003942]; NAD binding [GO:0051287]; protein dimerization activity [GO:0046983]; cellular amino acid biosynthetic process [GO:0008652] locus:2006867; AT1G14810 Dehydrogenase Aspartate-semialdehyde dehydrogenase family protein, expressed (Os03g0760700 protein) (Putative dehydrogenase) Q93Y73 Q93Y73_ORYSJ LOC_Os03g55280 Os03g0760700 OSJNBb0048A17.6 OSNPB_030760700 ENOG411DYJA O22847 O22847_ARATH At2g43320/T1O24.6 (Expressed protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) 38627 At2g43320/T1O24.6 (Expressed protein) (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) methyltransferase activity [GO:0008168] locus:2041076; AT2G43320 Inherit from KOG: histidine protein methyltransferase 1 homolog OJ990528_30.4 protein (Os04g0492400 protein) (cDNA clone:J013116I01, full insert sequence) (cDNA clone:J023128I21, full insert sequence) Q7X8M4 Q7X8M4_ORYSJ Os04g0492400 OJ990528_30.4 OsJ_15298 OSNPB_040492400 ENOG411DW2Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: F-box protein Os05g0490300 protein (Fragment) Q0DH60 Q0DH60_ORYSJ Os05g0490300 Os05g0490300 OSNPB_050490300 ENOG411DS2V THO2 F4IAT2,A0A1P8ARY6,A0A1P8ARZ4,A0A1P8AS07,A0A1P8AS05,A0A1P8ARZ0,F4IAT3 THOC2_ARATH,A0A1P8ARY6_ARATH,A0A1P8ARZ4_ARATH,A0A1P8AS07_ARATH,A0A1P8AS05_ARATH,A0A1P8ARZ0_ARATH,F4IAT3_ARATH THO complex subunit 2 (AtTHO2) (Protein EMBRYO DEFECTIVE 2793),THO2 DISRUPTION PHENOTYPE: Embryonic lethality when homozygous. {ECO:0000269|PubMed:20668032}. Embryo defective; Cotyledon-D. Meinke-2008 FUNCTION: Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. {ECO:0000250}. 207075,205722,203123,205793,195698,184340,205724 THO complex subunit 2 (AtTHO2) (Protein EMBRYO DEFECTIVE 2793),THO2 nuclear speck [GO:0016607]; nucleus [GO:0005634]; THO complex [GO:0000347]; THO complex part of transcription export complex [GO:0000445]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; miRNA transport [GO:1990428]; mRNA export from nucleus [GO:0006406]; mRNA processing [GO:0006397]; production of miRNAs involved in gene silencing by miRNA [GO:0035196]; RNA splicing [GO:0008380] locus:2826042; AT1G24706 THO complex subunit Os01g0916800 protein A0A0P0VC44 A0A0P0VC44_ORYSJ Os01g0916800 OSNPB_010916800 ENOG411DS2Q Q9ZVJ2 AMERL_ARATH Uncharacterized protein At2g38710 24245 Uncharacterized protein At2g38710 cytosol [GO:0005829]; response to salt stress [GO:0009651] locus:2064189; AT2G38710 AMMECR1 Expressed protein (Os10g0573100 protein) (cDNA clone:J023001I03, full insert sequence) Q336P8 Q336P8_ORYSJ LOC_Os10g42250 Os10g0573100 OsJ_32552 OSJNBa0003O19.6 OSNPB_100573100 ENOG411DS2P GDPD5,GDPD6 Q9C907,Q9SD81,A0A1P8BCR6 GDPD5_ARATH,GDPD6_ARATH,A0A1P8BCR6_ARATH Glycerophosphodiester phosphodiesterase GDPD5 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 5) (ATGDPD5),Glycerophosphodiester phosphodiesterase GDPD6 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 6) (ATGDPD6),PLC-like phosphodiesterases superfamily protein ARA:AT1G74210-MONOMER;,ARA:AT5G08030-MONOMER; 3.1.4.46 45021,42882,44623 Glycerophosphodiester phosphodiesterase GDPD5 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 5) (ATGDPD5),Glycerophosphodiester phosphodiesterase GDPD6 (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase 6) (ATGDPD6),PLC-like phosphodiesterases superfamily protein cell wall [GO:0005618]; extracellular region [GO:0005576]; vacuole [GO:0005773]; glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629],glycerophosphodiester phosphodiesterase activity [GO:0008889]; glycerol metabolic process [GO:0006071]; lipid metabolic process [GO:0006629],phosphoric diester hydrolase activity [GO:0008081]; lipid metabolic process [GO:0006629] TISSUE SPECIFICITY: Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21323773}.,TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:21323773}. locus:2019642;,locus:2142823; AT1G74210,AT5G08030 Glycerophosphoryl diester Glycerophosphoryl diester phosphodiesterase family protein, expressed (Os03g0603600 protein) (Putative phosphodiesterase family) (cDNA clone:J023117P17, full insert sequence),Os01g0763600 protein (cDNA clone:006-311-E04, full insert sequence) (cDNA clone:J013070K24, full insert sequence) Q6AUZ6,Q8LR39 Q6AUZ6_ORYSJ,Q8LR39_ORYSJ OSJNBa0004G03.4 LOC_Os03g40670 Os03g0603600 OsJ_11674 OSNPB_030603600,Os01g0763600 Os01g0763600 OsJ_03553 OSNPB_010763600 P0512C01.48 ENOG411DS2Y FMO1,FMO2 Q9LMA1,Q9FKE7 FMO1_ARATH,FMO2_ARATH Probable flavin-containing monooxygenase 1 (EC 1.14.13.-),Putative flavin-containing monooxygenase 2 (EC 1.14.13.-) Loss of RPP2 resistance without effect on salicylic acid accumulation; increased susceptibility to virulent Pseudomonas syringae infection. Complete loss of systemic acquired resistance-J. Zeier-2006 FUNCTION: Required for the establishment of systemic acquired resistance (SAR). Not involved in local defense mechanisms. Confers a salicylic acid-dependent (SA) resistance to virulent pathogens such as P.syringae pv tomato and H.parasitica. {ECO:0000269|PubMed:16778014, ECO:0000269|PubMed:16856982}. ARA:AT1G19250-MONOMER;,ARA:AT5G45180-MONOMER; R-ATH-217271; 1.14.13.8; 1.14.13.- 60396,52318 Probable flavin-containing monooxygenase 1 (EC 1.14.13.-),Putative flavin-containing monooxygenase 2 (EC 1.14.13.-) flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; cellular response to hypoxia [GO:0071456]; defense response signaling pathway, resistance gene-dependent [GO:0009870]; defense response signaling pathway, resistance gene-independent [GO:0010204]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; oxidation-reduction process [GO:0055114]; plant-type hypersensitive response [GO:0009626]; response to other organism [GO:0051707]; systemic acquired resistance [GO:0009627],flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; oxidation-reduction process [GO:0055114] locus:2202155;,locus:2153353; AT1G19250,AT5G45180 flavin-containing monooxygenase Flavin-containing monooxygenase (EC 1.-.-.-) A0A0P0XQW5,A0A0P0VTY6 A0A0P0XQW5_ORYSJ,A0A0P0VTY6_ORYSJ Os09g0548700 OSNPB_090548700,Os03g0182000 OSNPB_030182000 ENOG411DS2X D2HGDH O23240 D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial (AtD-2HGDH) (EC 1.1.99.39) DISRUPTION PHENOTYPE: No visible phenotype when grown under standard conditions. {ECO:0000269|PubMed:19586914, ECO:0000269|PubMed:20501910}. FUNCTION: Catalyzes the oxidation of (R)-2-hydroxyglutarate to 2-oxoglutarate. May be involved in the catabolism of propionyl-CoA derived from beta-oxidation. Involved in degradation of lysine for the supply of carbon and electrons to the ETF/ETFQO complex during dark-induced sugar starvation. {ECO:0000269|PubMed:19586914, ECO:0000269|PubMed:20501910, ECO:0000269|PubMed:21296880}. ARA:MONOMERQT-4168; R-ATH-880009; 1.1.99.39 61445 D-2-hydroxyglutarate dehydrogenase, mitochondrial (AtD-2HGDH) (EC 1.1.99.39) mitochondrion [GO:0005739]; (R)-2-hydroxyglutarate dehydrogenase activity [GO:0051990]; 2-hydroxyglutarate dehydrogenase activity [GO:0047545]; D-lactate dehydrogenase (cytochrome) activity [GO:0004458]; FAD binding [GO:0071949]; lactate oxidation [GO:0019516]; nitrogen compound metabolic process [GO:0006807]; photorespiration [GO:0009853]; respiratory electron transport chain [GO:0022904] locus:2115230; AT4G36400 D-2-hydroxyglutarate dehydrogenase Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39),Os07g0187200 protein (Fragment) Q7XI14,C7J4R4 D2HDH_ORYSJ,C7J4R4_ORYSJ D2HGDH Os07g0187200 LOC_Os07g08950 OsJ_23376 OSJNBb0084L07.2 P0506C07.26,Os07g0187200 Os07g0187200 OSNPB_070187200 FUNCTION: Catalyzes the oxidation of D-2-hydroxyglutarate to alpha-ketoglutarate. {ECO:0000250}. ENOG411DW28 Q9FYK3 Q9FYK3_ARATH F21J9.27 (Rubisco methyltransferase family protein) 52590 F21J9.27 (Rubisco methyltransferase family protein) chloroplast [GO:0009507]; protein-lysine N-methyltransferase activity [GO:0016279]; peptidyl-lysine monomethylation [GO:0018026] locus:2024066; AT1G24610 Rubisco LSMT substrate-binding Os02g0733800 protein (SET domain-containing protein-like) (cDNA clone:J033058C09, full insert sequence) Q6Z2I7 Q6Z2I7_ORYSJ Os02g0733800 Os02g0733800 OSNPB_020733800 P0643A10.40 ENOG411DS2Z Q9LU90,Q1PE57 FB188_ARATH,FBK87_ARATH F-box protein At3g26010,Putative F-box/kelch-repeat protein At4g22430 47342,47798 F-box protein At3g26010,Putative F-box/kelch-repeat protein At4g22430 locus:2092160; AT3G26010,AT4G22430 f-box family Os08g0529300 protein Q6ZIB2 Q6ZIB2_ORYSJ Os08g0529300 OJ1770_H02.19 OsJ_28039 OSNPB_080529300 ENOG411DW20 O49343,Q9ZU88 PP177_ARATH,PP204_ARATH Pentatricopeptide repeat-containing protein At2g30780,Pentatricopeptide repeat-containing protein At2g48000 52027,55040 Pentatricopeptide repeat-containing protein At2g30780,Pentatricopeptide repeat-containing protein At2g48000 intracellular membrane-bounded organelle [GO:0043231]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; RNA modification [GO:0009451] locus:2054462;,locus:2066379; AT2G30780,AT2G48000 Pentatricopeptide repeat-containing protein Os05g0407900 protein Q5TKC3 Q5TKC3_ORYSJ P0040B10.10 Os05g0407900 OSNPB_050407900 ENOG411DS2G MSG15.9 Q9FJ91 Q9FJ91_ARATH AT5g52010/MSG15_9 (C2H2-like zinc finger protein) (Dbj|BAA78737.1) 45754 AT5g52010/MSG15_9 (C2H2-like zinc finger protein) (Dbj|BAA78737.1) nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2173038; AT5G52010 ZnF_C2H2 Os06g0166200 protein (Zinc finger protein-like) Q5VRR3 Q5VRR3_ORYSJ Os06g0166200 Os06g0166200 OsJ_20252 OSJNBa0015I14.34 OSNPB_060166200 P0680A03.8 ENOG411E6UX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6UV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E6UW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0222600 protein (cDNA clone:J023107H23, full insert sequence) Q9LHU2 Q9LHU2_ORYSJ Os01g0222600 Os01g0222600 OsJ_00924 OSNPB_010222600 P0443E05.14 ENOG411E6UU F4ICW8 F4ICW8_ARATH Transmembrane protein 27914 Transmembrane protein integral component of membrane [GO:0016021] locus:4515102670; AT1G52343 NA NA NA NA NA NA NA NA ENOG411E6US NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioesterase superfamily Os01g0229600 protein A0A0N7KCL6 A0A0N7KCL6_ORYSJ Os01g0229600 OSNPB_010229600 ENOG411E6UP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: PRP4 pre-mRNA processing factor 4 homolog B (yeast) NA NA NA NA NA NA NA ENOG411E6UQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0474300 protein Q6Z4C8 Q6Z4C8_ORYSJ Os07g0474300 Os07g0474300 OsJ_24209 OSNPB_070474300 P0016H06.24 ENOG411E6UN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Auxin responsive protein NA NA NA NA NA NA NA ENOG411E6UM Q9SUM1 Q9SUM1_ARATH Uncharacterized protein AT4g30230 (Uncharacterized protein F9N11.80) 29180 Uncharacterized protein AT4g30230 (Uncharacterized protein F9N11.80) locus:2128961; AT4G30230 NA NA NA NA NA NA NA NA ENOG411E6UK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain Os06g0716100 protein Q0D9H0 Q0D9H0_ORYSJ Os06g0716100 Os06g0716100 OsJ_22667 OSNPB_060716100 ENOG411E6UH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6UI T14D3.150,MUP24.10 Q9M1T8,Q9FF51 Q9M1T8_ARATH,Q9FF51_ARATH AT3g45210/T14D3_150 (Uncharacterized protein T14D3.150),Emb|CAB72159.1 (Uncharacterized protein At5g60680) 16798,18227 AT3g45210/T14D3_150 (Uncharacterized protein T14D3.150),Emb|CAB72159.1 (Uncharacterized protein At5g60680) locus:2096900;,locus:2175846; AT3G45210,AT5G60680 Pfam:DUF584 NA NA NA NA NA NA NA ENOG411E6UF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0634000 protein (cDNA clone:J033050K04, full insert sequence) Q67VK7 Q67VK7_ORYSJ Os06g0634000 OsJ_22069 OSNPB_060634000 P0505A04.40 ENOG411E6UG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os02g0731400 protein (cDNA, clone: J100016H19, full insert sequence) B7F9Y7 B7F9Y7_ORYSJ Os02g0731400 OsJ_08265 OSNPB_020731400 ENOG411E6UD FDP,FD Q7PCC6,Q84JK2,A0A1P8B8Q9 FDP_ARATH,FD_ARATH,A0A1P8B8Q9_ARATH bZIP transcription factor 27 (AtbZIP27) (Protein FD PARALOG),Protein FD (bZIP transcription factor 14) (AtbZIP14),Basic-leucine zipper (BZIP) transcription factor family protein DISRUPTION PHENOTYPE: Slightly delayed flowering. In the plants missing both FD and FDP, fd-2 fdp-1 strongly delayed flowering, even in the presence of high FT levels. {ECO:0000269|PubMed:23543784}. Late flowering-T. Araki-2002 FUNCTION: Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.,FUNCTION: Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. 26039,31377,26600 bZIP transcription factor 27 (AtbZIP27) (Protein FD PARALOG),Protein FD (bZIP transcription factor 14) (AtbZIP14),Basic-leucine zipper (BZIP) transcription factor family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of photoperiodism, flowering [GO:2000028]; response to chitin [GO:0010200]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; DNA binding [GO:0003677]; protein self-association [GO:0043621]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; photoperiodism [GO:0009648]; positive regulation of flower development [GO:0009911]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of flower development [GO:0009909]; regulation of photoperiodism, flowering [GO:2000028]; regulation of transcription, DNA-templated [GO:0006355],transcription factor activity, sequence-specific DNA binding [GO:0003700] TISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}.,TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. locus:2827931;,locus:2125349; AT2G17770,AT4G35900 bZIP transcription factor NA NA NA NA NA NA NA ENOG411E6UE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone NA NA NA NA NA NA NA ENOG411E6UC ATL57 Q9SJJ7 ATL57_ARATH RING-H2 finger protein ATL57 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL57) PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 26479 RING-H2 finger protein ATL57 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL57) integral component of membrane [GO:0016021]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161] locus:2057861; AT2G27940 RING-H2 finger protein NA NA NA NA NA NA NA ENOG411E6UA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3339) Os07g0298400 protein (cDNA, clone: J065215C20, full insert sequence) Q6YSU3 Q6YSU3_ORYSJ Os07g0298400 Os07g0298400 OsJ_09031 OSNPB_070298400 P0680C01.25 ENOG411E6U8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA CY Cysteine proteinase inhibitor 6 (Oryzacystatin VI) (OC-VI) (Oryzacystatin-6),Cysteine proteinase inhibitor (Fragment) Q10Q46,A0A0P0VUM1 CYT6_ORYSJ,A0A0P0VUM1_ORYSJ Os03g0210200 LOC_Os03g11180,Os03g0210200 OSNPB_030210200 FUNCTION: Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity). {ECO:0000250}. ENOG411E6U9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Jacalin Protein GOS9,Os06g0169001 protein (Os06g0170200 protein),Os06g0169900 protein,Os04g0369100 protein,Os04g0295400 protein (Fragment),Os11g0165700 protein,Os01g0354100 protein P0C5C6,C7J408,A3B8T3,A0A0P0W909,A0A0P0W895,A0A0N7KSH4,A0A0P0V2W0 GOS9_ORYSJ,C7J408_ORYSJ,A3B8T3_ORYSJ,A0A0P0W909_ORYSJ,A0A0P0W895_ORYSJ,A0A0N7KSH4_ORYSJ,A0A0P0V2W0_ORYSJ GOS9 Os06g0169100 LOC_Os06g07250 OSJNBa0033B09.25,Os06g0169001 Os06g0170200 OSNPB_060169001,Os06g0169900 Os06g0169900 OsJ_20275 OSNPB_060169900,Os04g0369100 OSNPB_040369100,Os04g0295400 OSNPB_040295400,Os11g0165700 OSNPB_110165700,Os01g0354100 OSNPB_010354100 ENOG411E6U6 Q9LSN4 Q9LSN4_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein 19454 Plant invertase/pectin methylesterase inhibitor superfamily protein enzyme inhibitor activity [GO:0004857] locus:2086167; AT3G17130 Invertase pectin methylesterase inhibitor NA NA NA NA NA NA NA ENOG411E6U7 F4K5Q4 F4K5Q4_ARATH Uncharacterized protein 20483 Uncharacterized protein locus:2143335; AT5G27860 NA Os12g0553900 protein (Os12g0554000 protein) (cDNA, clone: J065213I02, full insert sequence),Os12g0516700 protein B7F928,A0A0P0YBD6 B7F928_ORYSJ,A0A0P0YBD6_ORYSJ Os12g0554000 Os12g0553900 OsJ_36291 OSNPB_120554000,Os12g0516700 OSNPB_120516700 ENOG411E6U4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os11g0427500 protein (Fragment),Os01g0894050 protein (Fragment),Os04g0422950 protein (Fragment),Os06g0481800 protein (Fragment),Os12g0299650 protein (Fragment),Os05g0218001 protein (Fragment) A0A0P0Y1J0,A0A0P0Y1L9,A0A0P0VBI1,A0A0P0WA82,A0A0P0WWQ5,A0A0P0Y996,A0A0P0WJC3 A0A0P0Y1J0_ORYSJ,A0A0P0Y1L9_ORYSJ,A0A0P0VBI1_ORYSJ,A0A0P0WA82_ORYSJ,A0A0P0WWQ5_ORYSJ,A0A0P0Y996_ORYSJ,A0A0P0WJC3_ORYSJ Os11g0427500 OSNPB_110427500,Os01g0894050 OSNPB_010894050,Os04g0422950 OSNPB_040422950,Os06g0481800 OSNPB_060481800,Os12g0299650 OSNPB_120299650,Os05g0218001 OSNPB_050218001 ENOG411E6U5 FLA19 Q5Q0H2 FLA19_ARATH Fasciclin-like arabinogalactan protein 19 FUNCTION: May be a cell surface adhesion protein. 26736 Fasciclin-like arabinogalactan protein 19 extracellular region [GO:0005576] locus:2037873; AT1G15190 FAS1 NA NA NA NA NA NA NA ENOG411E6U2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SANT Os05g0567600 protein B9FI64 B9FI64_ORYSJ Os05g0567600 OsJ_19579 OSNPB_050567600 ENOG411E6U3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Mitochondrial carrier protein NA NA NA NA NA NA NA ENOG411E6U0 IAA30 Q9M1R4,A0A1I9LTG7 IAA30_ARATH,A0A1I9LTG7_ARATH Auxin-responsive protein IAA30 (Indoleacetic acid-induced protein 30),Auxin-responsive protein iaa30-1 was found to produce significantly less shoot apical meristem somatic embryogenesis than Col wild type. FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036262}.,FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. {ECO:0000256|RuleBase:RU004549, ECO:0000256|SAAS:SAAS00574650}. 19238,17129 Auxin-responsive protein IAA30 (Indoleacetic acid-induced protein 30),Auxin-responsive protein nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; auxin-activated signaling pathway [GO:0009734]; gravitropism [GO:0009630]; response to auxin [GO:0009733]; root development [GO:0048364]; somatic embryogenesis [GO:0010262]; transcription, DNA-templated [GO:0006351],nucleus [GO:0005634]; auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2098023; AT3G62100 Indole-3-acetic acid inducible 30 NA NA NA NA NA NA NA ENOG411E6U1 Q8GWW5,B9DG54 Q8GWW5_ARATH,B9DG54_ARATH At3g45050 (Transmembrane protein) (Uncharacterized protein At3g45050/F14D17_120),AT3G45050 protein (Transmembrane protein) 13751,16746 At3g45050 (Transmembrane protein) (Uncharacterized protein At3g45050/F14D17_120),AT3G45050 protein (Transmembrane protein) integral component of membrane [GO:0016021] locus:2075969; AT3G45050 NA Os06g0731300 protein A0A0P0X1A9 A0A0P0X1A9_ORYSJ Os06g0731300 OSNPB_060731300 ENOG411ECGF NET1C Q9ZQX8 NET1C_ARATH Protein NETWORKED 1C FUNCTION: Plant-specific actin binding protein. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000305|PubMed:22840520}. 127710 Protein NETWORKED 1C plasma membrane [GO:0005886]; actin binding [GO:0003779] locus:2132348; AT4G02710 KIP1-like protein NA NA NA NA NA NA NA ENOG411E1V5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger protein Dof domain, zinc finger family protein, expressed (Os12g0569900 protein) Q2QND3 Q2QND3_ORYSJ Os12g0569900 LOC_Os12g38200 Os12g0569900 OSNPB_120569900 ENOG411DSK8 SRD2 Q8L627,A0A1P8ARE1 SRD2_ARATH,A0A1P8ARE1_ARATH snRNA-activating protein complex subunit (SNAPc subunit) (Protein SHOOT REDIFFERENTIATION DEFECTIVE 2),snRNA activating complex family protein DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:18064403}. temperature-sensitive mutant. srd2 seedlings grown at the permissive temperature (22C) appeared almost normal. At 28C both hypocotyl and root explants of the srd2 mutant could not establish shoot apical meristems de novo. When primary root segments of srd2 were cultured on root-inducing medium (RIM) at 28C abnormal lateral root primordia lacking functional apical meristems were frequently observed. except that they had fewer lateral roots than the wild-type seedlings. At the restrictive temperature (28C however the development of true leaves and primary roots in srd2 seedlings was severely interrupted. Whereas root explants of the srd2 mutant formed calli on callus-inducing medium (CIM) at either 22Cor 28C callus formation from srd2 hypocotyl explants was strongly inhibited at 28C Few lateral roots; Sensitive to high temperature-M. Sugiyama-2005 FUNCTION: Transcription activator of small-nuclear RNA genes (snRNA), which have essential roles in pre-mRNA splicing and rRNA processing. Essential protein involved in the establishment of apical meristems and organ primordia, embryogenesis, cell differentiation and cell proliferation, probably by modulating the establishment of auxin gradients. Participates in the control of competence in cell proliferation; required for the reinitiation of the progression of the cell cycle and subsequent cell proliferation during cell redifferentiation leading to callus formation, especially during the first day of dedifferentiation (e.g. callus, root and shoot formation from root and hypocotyl explants). {ECO:0000269|PubMed:12232244, ECO:0000269|PubMed:12881506, ECO:0000269|PubMed:16098103, ECO:0000269|PubMed:18064403, ECO:0000269|PubMed:20965997, ECO:0000269|PubMed:9389671}. 43527,53124 snRNA-activating protein complex subunit (SNAPc subunit) (Protein SHOOT REDIFFERENTIATION DEFECTIVE 2),snRNA activating complex family protein nucleus [GO:0005634]; DNA binding [GO:0003677]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; cell cycle switching [GO:0060184]; cell dedifferentiation [GO:0043697]; cellular response to auxin stimulus [GO:0071365]; cellular response to cytokinin stimulus [GO:0071368]; lateral root formation [GO:0010311]; longitudinal axis specification [GO:0009942]; meristem initiation [GO:0010014]; plant organ morphogenesis [GO:1905392]; radial axis specification [GO:0009945]; regulation of transcription, DNA-templated [GO:0006355]; snRNA transcription [GO:0009301]; transcription from RNA polymerase II promoter [GO:0006366] DEVELOPMENTAL STAGE: In young seedlings, accumulates in shoot and root apical meristems (SAM and RAM, respectively), leaf primordia, and root stele tissues. In roots, high levels throughout young root primordia that later decrease at the arrest of cell division, and finally increase again when the apical meristem become activated. In young developing leaves, present in guard cells, vascular tissues, trichomes, and trichome support cells to be later expressed uniformly in the lamina. Gradually restricted to the leaf margin and fades out in fully expanded leaves. In roots, detected in apices, stele tissues, and lateral root primordia. In flowers, first observed over the floral bud, and later restricted to vascular tissues in developing floral organs, except for the pistil, where the expression is ubiquitous. In mature flowers, disappears progressively from the pistil, but accumulates in mature pollen and the filaments. Also present in pedicels. In pollinated pistils, highly expressed in ovaries that contain developing embryos. Present throughout embryogenesis, particularly in the lower half of the embryo at the heart-shaped stage and in the radicle RAM region at the cotyledonary stage. {ECO:0000269|PubMed:18064403, ECO:0000269|PubMed:20965997}. TISSUE SPECIFICITY: Expressed in seedlings, apical meristems, developing leaves, roots, stipules and flowers. {ECO:0000269|PubMed:18064403}. locus:2018683; AT1G28560 snRNA-activating protein of 50kDa MW C terminal Os01g0912600 protein (Fragment) A0A0P0VBW1 A0A0P0VBW1_ORYSJ Os01g0912600 OSNPB_010912600 ENOG411DSK9 PPCK2,PPCK1 Q93VK0,Q9SPK4,F4HXN6 PPCK2_ARATH,PPCK1_ARATH,F4HXN6_ARATH Phosphoenolpyruvate carboxylase kinase 2 (AtPPCK2) (EC 2.7.11.1),Phosphoenolpyruvate carboxylase kinase 1 (AtPPCK1) (EC 2.7.11.1),Phosphoenolpyruvate carboxylase kinase 1 DISRUPTION PHENOTYPE: Retarded growth and loss of light-induced phosphoenolpyruvate carboxylase phosphorylation, but little or no effect on the metabolic flux through the anaplerotic pathway. {ECO:0000269|PubMed:19397910}. FUNCTION: Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation. {ECO:0000269|Ref.1}.,FUNCTION: Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation. {ECO:0000269|PubMed:10571893, ECO:0000269|Ref.5}. MISCELLANEOUS: Lacks the autoinhibitory region and EF hands found in calcium-dependent protein kinases. ARA:AT3G04530-MONOMER; R-ATH-445355;R-ATH-5627123; 4.1.1.49; 2.7.11.1 31199,31829,30813 Phosphoenolpyruvate carboxylase kinase 2 (AtPPCK2) (EC 2.7.11.1),Phosphoenolpyruvate carboxylase kinase 1 (AtPPCK1) (EC 2.7.11.1),Phosphoenolpyruvate carboxylase kinase 1 cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; cellular response to phosphate starvation [GO:0016036]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; response to cycloheximide [GO:0046898]; response to light stimulus [GO:0009416],cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; response to cycloheximide [GO:0046898]; response to light stimulus [GO:0009416],ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] TISSUE SPECIFICITY: Expressed in flowers and roots, and at lower levels in cauline leaves. Barely detectable in rosette leaves and stems. {ECO:0000269|Ref.1}.,TISSUE SPECIFICITY: Expressed in rosette leaves, and to lower levels in flowers and roots. Barely detectable in siliques, cauline leaves and stems. {ECO:0000269|Ref.5}. locus:2100875;,locus:2025520; AT3G04530,AT1G08650 phosphoenolpyruvate carboxylase kinase Os02g0807000 protein (Putative phosphoenolpyruvate carboxylase kinase) Q6K8E6 Q6K8E6_ORYSJ Os02g0807000 Os02g0807000 OJ1111_C07.26 OSNPB_020807000 ENOG411DSK1 Q9SSL0,Q8W4R0,A0A1P8AN09,A0A1P8BGJ0,A0A1P8BGI7,F4KH14 Q9SSL0_ARATH,Q8W4R0_ARATH,A0A1P8AN09_ARATH,A0A1P8BGJ0_ARATH,A0A1P8BGI7_ARATH,F4KH14_ARATH At1g70820 (F15H11.7 protein) (Phosphoglucomutase, putative / glucose phosphomutase) (Putative phosphoglucomutase),AT5g17530/K10A8_10 (Phosphoglucosamine mutase family protein),Phosphoglucomutase, putative / glucose phosphomutase,Phosphoglucosamine mutase family protein ARA:AT1G70820-MONOMER;,ARA:AT5G17530-MONOMER; 67312,62875,64709,58310,69765,66987 At1g70820 (F15H11.7 protein) (Phosphoglucomutase, putative / glucose phosphomutase) (Putative phosphoglucomutase),AT5g17530/K10A8_10 (Phosphoglucosamine mutase family protein),Phosphoglucomutase, putative / glucose phosphomutase,Phosphoglucosamine mutase family protein chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; intramolecular transferase activity, phosphotransferases [GO:0016868]; carbohydrate metabolic process [GO:0005975],intramolecular transferase activity, phosphotransferases [GO:0016868]; carbohydrate metabolic process [GO:0005975] locus:2014025;,locus:2151366; AT1G70820,AT5G17530 phosphoglucosamine mutase family protein Os07g0447800 protein (Putative phosphoglucomutase, chloroplast) (cDNA clone:J013000J06, full insert sequence),Os06g0476200 protein (Putative phosphomannomutase),Os06g0476200 protein Q7XHZ2,Q69TT2,A0A0P0WX14 Q7XHZ2_ORYSJ,Q69TT2_ORYSJ,A0A0P0WX14_ORYSJ P0475E07.126 Os07g0447800 OSNPB_070447800,Os06g0476200 Os06g0476200 OsJ_21347 OSJNBa0026P23.2-1 OSNPB_060476200,Os06g0476200 OSNPB_060476200 ENOG411ECQ3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AMP-binding enzyme NA NA NA NA NA NA NA ENOG411ECQ1 PAL3 P45725,F4JW69 PAL3_ARATH,F4JW69_ARATH Phenylalanine ammonia-lyase 3 (EC 4.3.1.24),Phenylalanine ammonia-lyase (EC 4.3.1.24) FUNCTION: This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton. PATHWAY: Phenylpropanoid metabolism; trans-cinnamate biosynthesis; trans-cinnamate from L-phenylalanine: step 1/1.,PATHWAY: Phenylpropanoid metabolism; trans-cinnamate biosynthesis; trans-cinnamate from L-phenylalanine: step 1/1. {ECO:0000256|RuleBase:RU003955}. R-ATH-70921; 4.3.1.24; 4.3.1.24 76241,76674 Phenylalanine ammonia-lyase 3 (EC 4.3.1.24),Phenylalanine ammonia-lyase (EC 4.3.1.24) cytoplasm [GO:0005737]; phenylalanine ammonia-lyase activity [GO:0045548]; cinnamic acid biosynthetic process [GO:0009800]; L-phenylalanine catabolic process [GO:0006559] locus:2146708; AT5G04230 phenyl alanine ammonia-lyase 3 NA NA NA NA NA NA NA ENOG411ECQ5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECQS GPX5,GPX4 Q9LYB4,A0A1P8AZN1 GPX5_ARATH,A0A1P8AZN1_ARATH Probable glutathione peroxidase 5 (EC 1.11.1.9),Glutathione peroxidase FUNCTION: May constitute a glutathione peroxidase-like protective system against oxidative stresses. {ECO:0000250}. ARA:AT3G63080-MONOMER; R-ATH-2142712; 1.11.1.9 19327,16570 Probable glutathione peroxidase 5 (EC 1.11.1.9),Glutathione peroxidase endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; glutathione peroxidase activity [GO:0004602]; embryo development ending in seed dormancy [GO:0009793]; response to oxidative stress [GO:0006979],glutathione peroxidase activity [GO:0004602]; response to oxidative stress [GO:0006979] TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14617062}. locus:2099252; AT3G63080 Glutathione peroxidase NA NA NA NA NA NA NA ENOG411ECQR ATHB-20 Q8LAT0 ATB20_ARATH Homeobox-leucine zipper protein ATHB-20 (HD-ZIP protein ATHB-20) (Homeodomain transcription factor ATHB-20) Increased seed dormancy; Sensitive to ABA-F. Gubler-2009 FUNCTION: Probable transcription factor. {ECO:0000250}. 33076 Homeobox-leucine zipper protein ATHB-20 (HD-ZIP protein ATHB-20) (Homeodomain transcription factor ATHB-20) nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; response to auxin [GO:0009733]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}. TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. locus:2102107; AT3G01220 Homeobox associated leucine zipper NA NA NA NA NA NA NA ENOG411ECQW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411ECQU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FBOX MEIOTIC F-BOX protein MOF,Os04g0464900 protein Q7X7A4,A0A0P0WB97 MOF_ORYSJ,A0A0P0WB97_ORYSJ MOF Os04g0464966 OSJNBa0060P14.14 OSJNBb0048E02.5,Os04g0464900 OSNPB_040464900 DISRUPTION PHENOTYPE: Plants are female fertile, but male sterile as they are not able to produce tetrads and microspores. No differences compared to the wild-type plant during the vegetative stage. Plants develop normal panicles and floral organs, except for smaller and pale-yellow anthers that fail to produce viable pollen grains. No effect on the differentiation or early mitotic division of germ cells. No meiocytes are detected in 4.5 mm and 5.0 mm long flowers, but in 3.0 mm flowers meiosis appears to initiate normally. At leptotene stage of meiotic prophase I, chromosomes appear normal in male meiocytes and cohesion of sister chromatids is not affected. However, subsequent stages of prohase I are severely impaired. Meiocytes display disrupted telomere bouquet formation, impaired pairing and synapsis of homologous chromosomes, and arrested meiocytes at late prophase I, followed by apoptosis. The transverse filament protein ZEP1, an essential synaptonemal complex (SC)-related protein, is not detected. Although normal, programmed DNA double-strand breaks (DSBs) form, foci of the phosphorylated histone gamma H2AX, a marker for DSBs, persist indicating that many of the DSBs remain unrepaired. The recruitment of COM1 and RAD51C to DSBs is severely compromised in meiocytes indicating that normally formed DSB ends are not processed and repaired. {ECO:0000269|PubMed:27436711}. FUNCTION: Probable component of a SCF (SKP1-CULLIN-F-box protein) E3 ubiquitin-protein ligase complex and may function through the ubiquitin-mediated protein degradation or signaling pathway. Required for male meiotic prophase I progression. Required for telomere bouquet formation, homologous chromosome pairing and for the formation of the synaptonemal complex (SC), which stabilizes initial chromosomal axial associations and promotes crossover formation. Involved in meiotic DNA double-strand break (DSB) end-processing and repair, and is important in the recruitment of DSB repair proteins to the DSB sites. {ECO:0000269|PubMed:27436711}. ENOG411ECQY UMAMIT47,UMAMIT44,UMAMIT45,UMAMIT46 F4IYZ0,Q8VYZ7,Q9LRS5,Q56X95,Q9LRS6,A0A1I9LL86,F4IYZ1,A0A1I9LSQ0,A0A1I9LRY5,A0A1I9LRY4,A0A1I9LSQ5,A0A1I9LLQ6,A0A1I9LLQ7,A0A1I9LL85,A0A1I9LL88 WTR21_ARATH,WTR20_ARATH,WTR22_ARATH,WTR23_ARATH,Q9LRS6_ARATH,A0A1I9LL86_ARATH,F4IYZ1_ARATH,A0A1I9LSQ0_ARATH,A0A1I9LRY5_ARATH,A0A1I9LRY4_ARATH,A0A1I9LSQ5_ARATH,A0A1I9LLQ6_ARATH,A0A1I9LLQ7_ARATH,A0A1I9LL85_ARATH,A0A1I9LL88_ARATH WAT1-related protein At3g28080,WAT1-related protein At3g28070,WAT1-related protein At3g28100,WAT1-related protein At3g28130,Nodulin MtN21 /EamA-like transporter family protein,WAT1-related protein 39242,39531,38560,38686,29731,28837,33061,23551,28060,28986,25853,25629,24196,25208,23391 WAT1-related protein At3g28080,WAT1-related protein At3g28070,WAT1-related protein At3g28100,WAT1-related protein At3g28130,Nodulin MtN21 /EamA-like transporter family protein,WAT1-related protein integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; transport [GO:0006810],integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857] locus:2091393;,locus:2091383;,locus:2091338;,locus:2091368; AT3G28080,AT3G28070,AT3G28100,AT3G28130 EamA-like transporter family NA NA NA NA NA NA NA ENOG411ECQB CRK40 Q9SYS3,A0A1P8B6Z8,F4JGE0 CRK40_ARATH,A0A1P8B6Z8_ARATH,F4JGE0_ARATH Cysteine-rich receptor-like protein kinase 40 (Cysteine-rich RLK40) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 40 2.7.11.- 73236,45851,64012 Cysteine-rich receptor-like protein kinase 40 (Cysteine-rich RLK40) (EC 2.7.11.-),Cysteine-rich RLK (RECEPTOR-like protein kinase) 40 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; protein phosphorylation [GO:0006468],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2125766; AT4G04570 cysteine-rich RLK (RECEPTOR-like protein kinase) NA NA NA NA NA NA NA ENOG411ECQD IQD14,T16L24.240 Q8LPG9,Q9M199,B3H4F6 IQD14_ARATH,Q9M199_ARATH,B3H4F6_ARATH Protein IQ-DOMAIN 14,IQ-domain 13 (Uncharacterized protein At3g59690) (Uncharacterized protein T16L24.240),IQ-domain 14 FUNCTION: May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level (By similarity). {ECO:0000250}. 74282,58505,74410 Protein IQ-DOMAIN 14,IQ-domain 13 (Uncharacterized protein At3g59690) (Uncharacterized protein T16L24.240),IQ-domain 14 plasma membrane [GO:0005886] locus:2097478;,locus:2043959; AT2G43680,AT3G59690 IQ calmodulin-binding motif NA NA NA NA NA NA NA ENOG411ECQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) NA NA NA NA NA NA NA ENOG411ECQH dl4330c O23504 O23504_ARATH C2H2-like zinc finger protein (Uncharacterized protein AT4g16610) (Uncharacterized protein dl4330c) 22837 C2H2-like zinc finger protein (Uncharacterized protein AT4g16610) (Uncharacterized protein dl4330c) nucleic acid binding [GO:0003676]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355] locus:2130898; AT4G16610 Zinc finger C2H2 type family protein NA NA NA NA NA NA NA ENOG411DSKX Q94C15 Q94C15_ARATH At1g69680/T6C23_12 (Ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)) 21871 At1g69680/T6C23_12 (Ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)) locus:2205070; AT1G69680 RAN guanine nucleotide release OSJNBa0036B21.25 protein (OSJNBa0072F16.2 protein) (Os04g0459600 protein) (cDNA clone:006-309-H07, full insert sequence) Q7X8P2 Q7X8P2_ORYSJ Os04g0459600 Os04g0459600 OSJNBa0036B21.25 OSJNBa0072F16.2 OSNPB_040459600 ENOG411DSKY Q9CAW4 Q9CAW4_ARATH Transport protein particle (TRAPP) component (Uncharacterized protein At3g05000) (Uncharacterized protein T9J14.5) Male gametophyte defective; Embryo defective (inferred)-S. McCormick-2009 R-ATH-204005;R-ATH-8876198; 19572 Transport protein particle (TRAPP) component (Uncharacterized protein At3g05000) (Uncharacterized protein T9J14.5) cis-Golgi network [GO:0005801]; trans-Golgi network [GO:0005802]; TRAPP complex [GO:0030008]; ER to Golgi vesicle-mediated transport [GO:0006888]; pollen tube development [GO:0048868]; response to abscisic acid [GO:0009737] locus:2114850; AT3G05000 Trafficking protein particle complex subunit Os09g0244900 protein (cDNA clone:J013066M10, full insert sequence) (cDNA clone:J013066O10, full insert sequence),Os09g0244900 protein (Putative trafficking protein particle complex 6B) (cDNA clone:001-042-B03, full insert sequence) (cDNA clone:J023131N19, full insert sequence),Os07g0291100 protein (cDNA clone:001-121-D05, full insert sequence),Os07g0291100 protein (Fragment) B7EPE7,Q6K335,Q7F0A6,A0A0N7KNA0 B7EPE7_ORYSJ,Q6K335_ORYSJ,Q7F0A6_ORYSJ,A0A0N7KNA0_ORYSJ Os09g0244900 Os09g0244900 OSNPB_090244900,Os09g0244900 OSJNBa0069P02.11-1 OSNPB_090244900,P0656C04.104-1 Os07g0291100 OsJ_23884 OSNPB_070291100,Os07g0291100 OSNPB_070291100 ENOG411E3GT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF623 Os05g0517100 protein A0A0N7KL33 A0A0N7KL33_ORYSJ Os05g0517100 OSNPB_050517100 ENOG411EA9U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Terpene synthase family metal binding domain NA NA NA NA NA NA NA ENOG411EA9T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PAN_AP NA NA NA NA NA NA NA ENOG411EA9W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function DUF594 NA NA NA NA NA NA NA ENOG411EA9V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 3 N terminal domain NA NA NA NA NA NA NA ENOG411EA9P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Deoxynucleoside kinase NA NA NA NA NA NA NA ENOG411EA9R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os07g0554500 protein,Os07g0554200 protein Q6ZF75,A0A0P0X7J5 Q6ZF75_ORYSJ,A0A0P0X7J5_ORYSJ Os07g0554500 OSNPB_070554500 P0013G11.32,Os07g0554200 OSNPB_070554200 ENOG411EA9Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EA9X T6H20.20 Q9STG7 Q9STG7_ARATH Mitochondrial transcription termination factor family protein (Uncharacterized protein At3g46950) (Uncharacterized protein T6H20.20) 51337 Mitochondrial transcription termination factor family protein (Uncharacterized protein At3g46950) (Uncharacterized protein T6H20.20) chloroplast [GO:0009507]; double-stranded DNA binding [GO:0003690]; rRNA binding [GO:0019843]; single-stranded RNA binding [GO:0003727]; chloroplast organization [GO:0009658]; developmental process [GO:0032502]; regulation of transcription, DNA-templated [GO:0006355]; ribosome assembly [GO:0042255]; RNA splicing [GO:0008380] locus:2102827; AT3G46950 mTERF Os11g0206300 protein (Os11g0206400 protein) (mTERF family protein, expressed) (mTERF, putative) Q53LJ1 Q53LJ1_ORYSJ Os11g0206400 LOC_Os11g10000 Os11g0206300 OSNPB_110206400 ENOG411DSKM Q67XX3 FB252_ARATH F-box protein At5g06550 57419 F-box protein At5g06550 nucleus [GO:0005634]; core promoter proximal region sequence-specific DNA binding [GO:0000987]; histone H4-R3 methylation [GO:0043985]; positive regulation of seed germination [GO:0010030] locus:2144153; AT5G06550 F-Box protein Os11g0572800 protein (Transcription factor jumonji, putative, expressed) Q2R2A5 Q2R2A5_ORYSJ Os11g0572800 LOC_Os11g36450 Os11g0572800 OSNPB_110572800 ENOG411EA9Z NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1618) Os01g0601950 protein A2ZV47 A2ZV47_ORYSJ Os01g0601950 OsJ_02502 OSNPB_010601950 ENOG411EA9E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Holliday junction DNA helicase ruvB C-terminus NA NA NA NA NA NA NA ENOG411EA9D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA protein TRANSPARENT TESTA 1-like NA NA NA NA NA NA NA ENOG411EA9G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GDSL-like Lipase/Acylhydrolase NA NA NA NA NA NA NA ENOG411EA9F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ion channel NA NA NA NA NA NA NA ENOG411EA9A PUB56 Q8GXQ7,A0A1P8ASI2 PUB56_ARATH,A0A1P8ASI2_ARATH U-box domain-containing protein 56 (EC 2.3.2.27) (Plant U-box protein 56) (RING-type E3 ubiquitin transferase PUB56),RING/U-box superfamily protein FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 2.3.2.27 41864,32526 U-box domain-containing protein 56 (EC 2.3.2.27) (Plant U-box protein 56) (RING-type E3 ubiquitin transferase PUB56),RING/U-box superfamily protein ubiquitin-protein transferase activity [GO:0004842] locus:2198180; AT1G01670 Ubox NA NA NA NA NA NA NA ENOG411EA9C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF395 NA NA NA NA NA NA NA ENOG411EA9B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EA9M ROPGEF6 Q9M056,A0A1I9LLC8 ROFG6_ARATH,A0A1I9LLC8_ARATH Rop guanine nucleotide exchange factor 6 (AtRopGEF6) (Rho of plants guanine nucleotide exchange factor 6),ROP (Rho of plants) guanine nucleotide exchange factor 6 FUNCTION: Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. {ECO:0000250}. 64287,49252 Rop guanine nucleotide exchange factor 6 (AtRopGEF6) (Rho of plants guanine nucleotide exchange factor 6),ROP (Rho of plants) guanine nucleotide exchange factor 6 Rho guanyl-nucleotide exchange factor activity [GO:0005089] locus:2078976; AT3G55660 PRONE (Plant-specific Rop nucleotide exchanger) NA NA NA NA NA NA NA ENOG411EA9N NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RING NA NA NA NA NA NA NA ENOG411EA9I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PPR repeat NA NA NA NA NA NA NA ENOG411EA9H NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4-coumarate--CoA ligase-like 8 Putative 4-coumarate--CoA ligase-like 8 (EC 6.2.1.-),Os07g0639100 protein Q8GVF9,A0A0P0XA36 4CLL8_ORYSJ,A0A0P0XA36_ORYSJ 4CLL8 Os07g0639100 LOC_Os07g44560 OJ1340_C08.126,Os07g0639100 OSNPB_070639100 ENOG411EA9K PLC5 Q944C2,A0A1P8BHA9 PLCD5_ARATH,A0A1P8BHA9_ARATH Phosphoinositide phospholipase C 5 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC5) (AtPLC5) (AtPLCx) (PI-PLC5),Phosphoinositide phospholipase C (EC 3.1.4.11) FUNCTION: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. {ECO:0000269|Ref.6}. ARA:AT5G58690-MONOMER; R-ATH-112043;R-ATH-114604;R-ATH-1855204;R-ATH-202433;R-ATH-399997;R-ATH-416476;R-ATH-434316;R-ATH-5607764; 3.1.4.11; Phosphatidylinositol signaling system (04070),Calcium signaling pathway (04020),Inositol phosphate metabolism (00562),Metabolic pathways (01100) 3.1.4.11 66253,64048 Phosphoinositide phospholipase C 5 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC5) (AtPLC5) (AtPLCx) (PI-PLC5),Phosphoinositide phospholipase C (EC 3.1.4.11) cytosol [GO:0005829]; plasma membrane [GO:0005886]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042],intracellular [GO:0005622]; phosphatidylinositol phospholipase C activity [GO:0004435]; signal transducer activity [GO:0004871]; intracellular signal transduction [GO:0035556]; lipid catabolic process [GO:0016042] TISSUE SPECIFICITY: Expressed in leaves, roots, flowers and siliques. High levels of expression in the guard cells and vasculature of leaves and roots. {ECO:0000269|Ref.6}. locus:2178833; AT5G58690 Pfam:efhand_like NA NA NA NA NA NA NA ENOG411EA9J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Rhomboid family NA NA NA NA NA NA NA ENOG411DSKK Q9M005 Q9M005_ARATH Methyltransferase (Uncharacterized protein At5g01710) (Uncharacterized protein F7A7_230) 58289 Methyltransferase (Uncharacterized protein At5g01710) (Uncharacterized protein F7A7_230) cytoplasm [GO:0005737]; S-adenosylmethionine-dependent methyltransferase activity [GO:0008757]; methylation [GO:0032259] locus:2149790; AT5G01710 Methyltransferase domain Os07g0692401 protein B9FV09 B9FV09_ORYSJ Os07g0692401 Os07g0692401 OsJ_25678 OSNPB_070692401 ENOG411EA95 MRN17.16 Q84JJ0,F4KBD8 Q84JJ0_ARATH,F4KBD8_ARATH Enabled-like protein (DUF1635) (Uncharacterized protein At3g44940),Enabled-like protein (DUF1635) 28325,27111 Enabled-like protein (DUF1635) (Uncharacterized protein At3g44940),Enabled-like protein (DUF1635) locus:2075939;,locus:2172666; AT3G44940,AT5G22930 Protein of unknown function (DUF1635) NA NA NA NA NA NA NA ENOG411EA94 Q9LUU3,Q9LUP4,Q9LUP5,Q9LUU4,F4IPQ0 FBK58_ARATH,FBK60_ARATH,FBK59_ARATH,FB149_ARATH,F4IPQ0_ARATH Putative F-box/kelch-repeat protein At3g17280,Putative F-box/kelch-repeat protein At3g17540,F-box/kelch-repeat protein At3g17530,Putative F-box protein At3g17270,F-box associated ubiquitination effector family protein 43944,46556,44152,15614,31381 Putative F-box/kelch-repeat protein At3g17280,Putative F-box/kelch-repeat protein At3g17540,F-box/kelch-repeat protein At3g17530,Putative F-box protein At3g17270,F-box associated ubiquitination effector family protein ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2088985;,locus:2090577;,locus:2090567;,locus:2061102; AT3G17280,AT3G17540,AT3G17530,AT3G17270,AT2G24510 F-box associated NA NA NA NA NA NA NA ENOG411EA97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycosyl hydrolase family 1 NA NA NA NA NA NA NA ENOG411EA96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FAD dependent oxidoreductase NA NA NA NA NA NA NA ENOG411EA91 CPK22 Q9ZSA3,A0A1P8B718,A0A1P8B715,A0A1P8B707 CDPKM_ARATH,A0A1P8B718_ARATH,A0A1P8B715_ARATH,A0A1P8B707_ARATH Calcium-dependent protein kinase 22 (EC 2.7.11.1),Calcium-dependent kinase-like protein FUNCTION: May play a role in signal transduction pathways that involve calcium as a second messenger. R-ATH-3371571;R-ATH-4086398;R-ATH-442729;R-ATH-5578775;R-ATH-936837; 2.7.11.1 55886,53041,56072,54557 Calcium-dependent protein kinase 22 (EC 2.7.11.1),Calcium-dependent kinase-like protein cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]; ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein kinase activity [GO:0004672],ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; protein serine/threonine kinase activity [GO:0004674] AT4G04710 Pfam:efhand NA NA NA NA NA NA NA ENOG411EA90 Q9FRH3,Q9C9X5,A0A1P8AWY7 CAP13_ARATH,CAP12_ARATH,A0A1P8AWY7_ARATH Putative clathrin assembly protein At1g25240,Putative clathrin assembly protein At1g68110,ENTH/VHS/GAT family protein 43409,43841,43540 Putative clathrin assembly protein At1g25240,Putative clathrin assembly protein At1g68110,ENTH/VHS/GAT family protein clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; Golgi apparatus [GO:0005794]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268]; endocytosis [GO:0006897],clathrin-coated vesicle [GO:0030136]; 1-phosphatidylinositol binding [GO:0005545]; clathrin binding [GO:0030276]; clathrin coat assembly [GO:0048268] locus:2032995;,locus:2200251; AT1G25240,AT1G68110 ANTH domain NA NA NA NA NA NA NA ENOG411EA93 Q8GWL7 Q8GWL7_ARATH Rho termination factor (Uncharacterized protein At2g41550) 52698 Rho termination factor (Uncharacterized protein At2g41550) DNA-templated transcription, termination [GO:0006353] locus:2062662; AT2G41550 Rho termination factor N-terminal domain NA NA NA NA NA NA NA ENOG411EA92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA IBR domain NA NA NA NA NA NA NA ENOG411DSKG CYP722A1 A0A1P8ARM8,A0A1P8ARN4,F4HP86 A0A1P8ARM8_ARATH,A0A1P8ARN4_ARATH,F4HP86_ARATH Cytochrome P450, family 722, subfamily A, polypeptide 1 R-ATH-211916;R-ATH-5365859; 49935,51573,54527 Cytochrome P450, family 722, subfamily A, polypeptide 1 heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705],heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; brassinosteroid biosynthetic process [GO:0016132]; brassinosteroid homeostasis [GO:0010268]; multicellular organism development [GO:0007275]; sterol metabolic process [GO:0016125] locus:2013159; AT1G19630 Abscisic acid 8'-hydroxylase Os05g0101600 protein (cDNA clone:J023149K19, full insert sequence) Q9FW33 Q9FW33_ORYSJ Os05g0101600 Os05g0101600 OSJNBb0098I11.10 OSNPB_050101600 P0036D10.9 ENOG411DY2D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucoronosyl and UDP-glucosyl transferase UDP-glycosyltransferase 79 (OsUGT79) (EC 2.4.1.-) (Deoxynivalenol-UDP-glucosyltransferase),OSJNBa0052O21.13 protein (Os04g0206450 protein),OSJNBa0052O21.1 protein (OSJNBb0005B05.12 protein) (Os04g0203600 protein),Glycosyltransferase (EC 2.4.1.-),Os04g0204100 protein,Os04g0204000 protein Q7XT97,Q7XWK4,Q7XQ29,Q7XWK3,A0A0P0W7X0,A0A0P0W7S3 UGT79_ORYSJ,Q7XWK4_ORYSJ,Q7XQ29_ORYSJ,Q7XWK3_ORYSJ,A0A0P0W7X0_ORYSJ,A0A0P0W7S3_ORYSJ UGT79 OS79 Os04g0206600 LOC_Os04g12970 OsJ_13826 OSJNBa0052O21.15,OSJNBa0052O21.13 Os04g0206450 OSNPB_040206450,Os04g0203600 OSJNBa0052O21.1 OSJNBb0005B05.12 OSNPB_040203600,Os04g0206500 OsJ_13825 OSJNBa0052O21.14 OSNPB_040206500,Os04g0204100 OSNPB_040204100,Os04g0204000 OSNPB_040204000 FUNCTION: Involved in the detoxification of the Fusarium mycotoxin deoxynivalenol by the transfer of glucose from UDP-D-glucose to the hydroxyl group at C-3, forming deoxynivalenol-3-O-beta-D-glucoside. {ECO:0000269|PubMed:26197338, ECO:0000269|PubMed:27715009}. ENOG411DY2I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ataxin-2 C-terminal region Os02g0244600 protein (Putative RNA-binding protein) Q6ESU4 Q6ESU4_ORYSJ Os02g0244600 Os02g0244600 OSNPB_020244600 P0503B05.42 ENOG411DY2H BZIP9 Q9FUD3 BZIP9_ARATH Basic leucine zipper 9 (AtbZIP9) (bZIP protein 9) (Basic leucine zipper OPAQUE 2 homolog 2) (Basic leucine zipper O2 homolog 2) FUNCTION: Transcription factor. {ECO:0000250}. 30409 Basic leucine zipper 9 (AtbZIP9) (bZIP protein 9) (Basic leucine zipper OPAQUE 2 homolog 2) (Basic leucine zipper O2 homolog 2) nucleus [GO:0005634]; DNA binding [GO:0003677]; protein heterodimerization activity [GO:0046982]; protein homodimerization activity [GO:0042803]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cellular response to glucose stimulus [GO:0071333]; transcription, DNA-templated [GO:0006351] DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. locus:2149403; AT5G24800 Transcription factor NA NA NA NA NA NA NA ENOG411DY26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os03g0148800 protein (Zinc finger, C2H2 type family protein, expressed) (cDNA clone:J013161F12, full insert sequence) Q8H084 Q8H084_ORYSJ LOC_Os03g05480 Os03g0148800 OsJ_09416 OSJNBb0050N02.7 OSNPB_030148800 ENOG411DY25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Caspase domain NA NA NA NA NA NA NA ENOG411E3GA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA STYKc Os11g0300700 protein A0A0P0Y1F5 A0A0P0Y1F5_ORYSJ Os11g0300700 OSNPB_110300700 ENOG411E1M6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Lipopolysaccharide kinase (Kdo/WaaP) family Mitogen-activated protein kinase 9 (MAP kinase 9) (EC 2.7.11.24),Mitogen-activated protein kinase 10 (MAP kinase 10) (EC 2.7.11.24),Os01g0629900 protein (Fragment) Q6L5D4,Q5ZCI1,A0A0P0V5J7,A0A0P0V5P0,A0A0P0V5I1 MPK9_ORYSJ,MPK10_ORYSJ,A0A0P0V5J7_ORYSJ,A0A0P0V5P0_ORYSJ,A0A0P0V5I1_ORYSJ MPK9 Os05g0582400 LOC_Os05g50560 OJ1651_G11.11 OSJNBb0035N21.16,MPK10 Os01g0629900 LOC_Os01g43910 OsJ_02699 OSJNBb0035I14.5-1 OSJNBb0035I14.5-2 OSJNBb0035I14.5-3,Os01g0629900 OSNPB_010629900 ENOG411E7PC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns (By similarity) NA NA NA NA NA NA NA ENOG411EBHP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thiolase C-terminal domain NA NA NA NA NA NA NA ENOG411EBHM GATA7 O65515 GATA7_ARATH GATA transcription factor 7 FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. 26799 GATA transcription factor 7 nucleus [GO:0005634]; transcription factor complex [GO:0005667]; chromatin binding [GO:0003682]; RNA polymerase II regulatory region sequence-specific DNA binding [GO:0000977]; RNA polymerase II transcription factor binding [GO:0001085]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding [GO:0001228]; zinc ion binding [GO:0008270]; cell differentiation [GO:0030154]; circadian rhythm [GO:0007623]; response to light stimulus [GO:0009416] locus:2122214; AT4G36240 gata transcription factor NA NA NA NA NA NA NA ENOG411EBH5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E1VI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Legume lectin domain Os07g0130100 protein (Putative receptor kinase Lecrk) (Putative receptor-like protein kinase) (cDNA clone:J023039H22, full insert sequence) Q84ZI4 Q84ZI4_ORYSJ P0483E09.6 Os07g0130100 OsJ_22966 OSJNBa0088O14.27 OSNPB_070130100 ENOG411E87E NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Centrosomal protein 120kDa NA NA NA NA NA NA NA ENOG411E87T NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os10g0331400 protein) Q8LM16 Q8LM16_ORYSJ Os10g0331400 LOC_Os10g18470 OSJNAb0008A05.22 OSNPB_100331400 ENOG411E50X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os10g0140700 protein A0A0P0XRK6 A0A0P0XRK6_ORYSJ Os10g0140700 OSNPB_100140700 ENOG411E50W NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: SWI SNF related matrix associated actin dependent regulator of chromatin subfamily a member Os08g0494700 protein A0A0P0XH58 A0A0P0XH58_ORYSJ Os08g0494700 OSNPB_080494700 ENOG411E50J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain NA NA NA NA NA NA NA ENOG411E50K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0217400 protein A0A0P0UZX7 A0A0P0UZX7_ORYSJ Os01g0217400 OSNPB_010217400 ENOG411E50H SRP9 Q9SMU7 SRP09_ARATH Signal recognition particle 9 kDa protein (SRP9) FUNCTION: Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (By similarity). {ECO:0000250}. R-ATH-1799339; 12023 Signal recognition particle 9 kDa protein (SRP9) signal recognition particle receptor complex [GO:0005785]; signal recognition particle, endoplasmic reticulum targeting [GO:0005786]; 7S RNA binding [GO:0008312]; signal recognition particle binding [GO:0005047]; negative regulation of translational elongation [GO:0045900]; SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616] locus:2101288; AT3G49100 Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (By similarity) NA NA NA NA NA NA NA ENOG411E50I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: receptor-like protein kinase NA NA NA NA NA NA NA ENOG411E50B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glucokinase NA NA NA NA NA NA NA ENOG411E508 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E509 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1218) Os05g0435300 protein Q0DHW7 Q0DHW7_ORYSJ Os05g0435300 Os05g0435300 OSNPB_050435300 ENOG411E503 ERF023 Q1ECI2 ERF23_ARATH Ethylene-responsive transcription factor ERF023 FUNCTION: Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. 21051 Ethylene-responsive transcription factor ERF023 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; ethylene-activated signaling pathway [GO:0009873]; transcription, DNA-templated [GO:0006351] locus:2035257; AT1G01250 Transcription factor NA NA NA NA NA NA NA ENOG411E501 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZF-HD homeobox protein Zinc-finger homeodomain protein 5 (OsZHD5),Zinc-finger homeodomain protein 6 (OsZHD6) Q5VM82,Q688U3 ZHD5_ORYSJ,ZHD6_ORYSJ ZHD5 Os01g0635550 LOC_Os01g44430 OSJNOa234E14.10,ZHD6 Os05g0579300 LOC_Os05g50310 10A19I.6 OsJ_19667 OSJNBa0017N18.8 FUNCTION: Putative transcription factor. {ECO:0000250}. ENOG411EM0R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EM0S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C-5 cytosine-specific DNA methylase NA NA NA NA NA NA NA ENOG411EM0P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EM0Q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain NA NA NA NA NA NA NA ENOG411EM0U MRB17.2 F4K0D3 F4K0D3_ARATH Transducin/WD40 repeat-like superfamily protein 50615 Transducin/WD40 repeat-like superfamily protein Cul4-RING E3 ubiquitin ligase complex [GO:0080008] locus:2172084; AT5G54520 WD repeat-containing protein 25-like Os02g0319800 protein (Putative splicing factor) (cDNA clone:J023052C02, full insert sequence) Q6EQW6 Q6EQW6_ORYSJ Os02g0319800 Os02g0319800 OsJ_06469 OSJNBa0086N11.22 OSNPB_020319800 ENOG411EM0X NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Flowering time control protein FPA NA NA NA NA NA NA NA ENOG411EM0B NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: helicase-like protein NA NA NA NA NA NA NA ENOG411EM0C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EM0F MOD1 Q9SLA8 FABI_ARATH Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (ENR) (EC 1.3.1.9) (NADH-dependent enoyl-ACP reductase 1) (Protein MOSAIC DEATH 1) DISRUPTION PHENOTYPE: Premature cell death in several organs, chlorotic and curly leaves, semidwarfism, distorted siliques, premature senescence of primary inflorescences, reduced fertility and decrease in total lipid content. {ECO:0000269|PubMed:10715326}. Semi-dwarf; Chlorotic, curled leaves; Distorted siliques; Reduced fertility; Early primary inflorescence senescence-J. Li-2000 FUNCTION: Catalyzes the NAD-dependent reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP). Catalyzes the last reduction step in the de novo synthesis cycle of fatty acids. Involved in the elongation cycle of fatty acids which are used in lipid metabolism. Required for normal plant growth. {ECO:0000269|PubMed:10715326, ECO:0000269|PubMed:18467464}. PATHWAY: Lipid metabolism; fatty acid biosynthesis. ARA:AT2G05990-MONOMER; 1.3.1.9 41214 Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (ENR) (EC 1.3.1.9) (NADH-dependent enoyl-ACP reductase 1) (Protein MOSAIC DEATH 1) chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; fatty acid synthase complex [GO:0005835]; thylakoid [GO:0009579]; copper ion binding [GO:0005507]; enoyl-[acyl-carrier-protein] reductase (NADH) activity [GO:0004318]; enoyl-[acyl-carrier-protein] reductase activity [GO:0016631]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Expressed in flowers and siliques and at lower levels in roots and leaves (at protein level). {ECO:0000269|PubMed:10380806, ECO:0000269|PubMed:10715326}. locus:2064681; AT2G05990 Enoyl- acyl-carrier-protein reductase Enoyl-[acyl-carrier-protein] reductase [NADH] 1, chloroplastic (ENR) (EC 1.3.1.9) (NADH-dependent enoyl-ACP reductase),Enoyl-[acyl-carrier-protein] reductase [NADH] 2, chloroplastic (ENR) (EC 1.3.1.9) (NADH-dependent enoyl-ACP reductase) Q6Z0I4,Q6H5J0 FABI1_ORYSJ,FABI2_ORYSJ Os08g0327400 LOC_Os08g23810 OSJNBa0049I01.2 P0670E08.13,Os09g0277800 LOC_Os09g10600 P0701E06.10 FUNCTION: Catalyzes the NAD-dependent reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP). Catalyzes the last reduction step in the de novo synthesis cycle of fatty acids. Involved in the elongation cycle of fatty acids which are used in lipid metabolism. Required for normal plant growth (By similarity). {ECO:0000250}. ENOG411EM0G DJC66 Q9LTT7 Q9LTT7_ARATH At3g13310 (Chaperone DnaJ-domain superfamily protein) (DnaJ protein, putative) (DnaJ-like protein) 17450 At3g13310 (Chaperone DnaJ-domain superfamily protein) (DnaJ protein, putative) (DnaJ-like protein) chloroplast [GO:0009507] locus:2088100; AT3G13310 DNAJ heat shock N-terminal domain-containing protein NA NA NA NA NA NA NA ENOG411EM0D NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411EM0E NOL Q8LEU3 NOL_ARATH Chlorophyll(ide) b reductase NOL, chloroplastic (EC 1.1.1.294) (Protein NON-YELLOW COLORING 1-LIKE) (AtNOL) (Protein NYC1-LIKE) (Short-chain dehydrogenase/reductase NOL) DISRUPTION PHENOTYPE: Slower degradation of chlorophyll b during dark incubation. {ECO:0000269|PubMed:19403948}. FUNCTION: Required for chlorophyll b degradation. Chlorophyll b, chlorophyllide b, pheophorbide b and pheophytin b can be used as substrates. Belongs to the chlorophyll catabolic enzymes (CCEs). {ECO:0000269|PubMed:19403948}. MISCELLANEOUS: Chlorophyll b reductase activity detected in vitro with a recombinant protein produced in a heterologous system. Able to act on the substrate within the protein-chlorophyll LHCII complex. ARA:AT5G04900-MONOMER;MetaCyc:AT5G04900-MONOMER; 1.1.1.294 38149 Chlorophyll(ide) b reductase NOL, chloroplastic (EC 1.1.1.294) (Protein NON-YELLOW COLORING 1-LIKE) (AtNOL) (Protein NYC1-LIKE) (Short-chain dehydrogenase/reductase NOL) chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; chlorophyll(ide) b reductase activity [GO:0034256]; chlorophyll catabolic process [GO:0015996]; PSII associated light-harvesting complex II catabolic process [GO:0010304] DEVELOPMENTAL STAGE: Constantly expressed throughout development. {ECO:0000269|PubMed:23200839}. locus:2175254; AT5G04900 short-chain dehydrogenase reductase NA NA NA NA NA NA NA ENOG411EM0J NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA chaperone protein dnaJ 11 NA NA NA NA NA NA NA ENOG411EM0K NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DnaJ domain DnaJ protein homolog-like (Os08g0548400 protein) Q6YT03 Q6YT03_ORYSJ Os08g0548400 Os08g0548400 OJ1112_E06.19 OsJ_28187 OSNPB_080548400 P0544G09.35 ENOG411EM0H DJC24 O48828 O48828_ARATH At2g17880 (At2g17880/At2g17880) (Chaperone DnaJ-domain superfamily protein) (Putative DnaJ protein) 17748 At2g17880 (At2g17880/At2g17880) (Chaperone DnaJ-domain superfamily protein) (Putative DnaJ protein) chloroplast [GO:0009507] locus:2827820; AT2G17880 DnaJ domain NA NA NA NA NA NA NA ENOG411EM02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat NA NA NA NA NA NA NA ENOG411EM03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os07g0161000 protein (cDNA clone:J013050G10, full insert sequence),OSJNBa0006B20.12 protein (Os04g0437500 protein) (cDNA clone:002-172-D07, full insert sequence),Os07g0161000 protein (Fragment) Q7XIM1,Q7XRB1,A0A0P0X2N8 Q7XIM1_ORYSJ,Q7XRB1_ORYSJ,A0A0P0X2N8_ORYSJ OJ1714_H10.131 Os07g0161000 OsJ_31366 OSNPB_070161000,Os04g0437500 Os04g0437500 OSJNBa0006B20.12 OSNPB_040437500,Os07g0161000 OSNPB_070161000 ENOG411EM01 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os03g0340700 protein (TPR Domain containing protein, expressed) (cDNA clone:J023093E24, full insert sequence) Q10LP1 Q10LP1_ORYSJ Os03g0340700 LOC_Os03g22140 Os03g0340700 OSNPB_030340700 ENOG411EM06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I assembly protein Ycf3 Photosystem I assembly protein Ycf3 P12203 YCF3_ORYSJ ycf3 LOC_Osp1g00350 FUNCTION: Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. {ECO:0000255|HAMAP-Rule:MF_00439}. ENOG411EM07 ycf3 P61843 YCF3_ARATH Photosystem I assembly protein Ycf3 FUNCTION: Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. {ECO:0000255|HAMAP-Rule:MF_00439}. 19536 Photosystem I assembly protein Ycf3 chloroplast thylakoid membrane [GO:0009535]; photosynthesis [GO:0015979] ATCG00360 Ycf3 protein NA NA NA NA NA NA NA ENOG411EM04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Tetratricopeptide repeat Os02g0753500 protein (Fragment) A0A0P0VPJ9 A0A0P0VPJ9_ORYSJ Os02g0753500 OSNPB_020753500 ENOG411EM05 O23052,Q8S8L9 Y1515_ARATH,Y2245_ARATH Uncharacterized TPR repeat-containing protein At1g05150,Uncharacterized TPR repeat-containing protein At2g32450 90169,90229 Uncharacterized TPR repeat-containing protein At1g05150,Uncharacterized TPR repeat-containing protein At2g32450 endosome [GO:0005768]; Golgi apparatus [GO:0005794]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; trans-Golgi network [GO:0005802]; calcium ion binding [GO:0005509]; transferase activity, transferring glycosyl groups [GO:0016757],plasma membrane [GO:0005886]; calcium ion binding [GO:0005509]; transferase activity, transferring glycosyl groups [GO:0016757] locus:2207255;,locus:2060206; AT1G05150,AT2G32450 ZnF_ZZ NA NA NA NA NA NA NA ENOG411EM08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF889 NA NA NA NA NA NA NA ENOG411E3JE Q9SIZ5,A0A1P8AZW6 Q9SIZ5_ARATH,A0A1P8AZW6_ARATH Homeodomain-like superfamily protein (Uncharacterized protein At2g40260),Homeodomain-like superfamily protein 46232,33091 Homeodomain-like superfamily protein (Uncharacterized protein At2g40260),Homeodomain-like superfamily protein nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],DNA binding [GO:0003677] locus:2063141; AT2G40260 Myb-like DNA-binding domain NA NA NA NA NA NA NA ENOG411E3JB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0689800 protein,Os12g0103150 protein,Os11g0103800 protein,Os11g0103550 protein (Fragment) C7J206,A0A0P0Y5T6,A0A0P0XXU0,A0A0P0XYD8 C7J206_ORYSJ,A0A0P0Y5T6_ORYSJ,A0A0P0XXU0_ORYSJ,A0A0P0XYD8_ORYSJ Os04g0689800 Os04g0689800 OSNPB_040689800,Os12g0103150 OSNPB_120103150,Os11g0103800 OSNPB_110103800,Os11g0103550 OSNPB_110103550 ENOG411E875 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF143 NA NA NA NA NA NA NA ENOG411E7J8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ultraviolet-B-repressible protein Os07g0673550 protein (Putative ultraviolet-B-repressible protein) Q8H452 Q8H452_ORYSJ P0470D12.144 Os07g0673550 OSNPB_070673550 P0304A10.1 ENOG411E7J9 Q8LEQ7,B3H530,Q1G3S4,A8MQY9,F4HWM1 Q8LEQ7_ARATH,B3H530_ARATH,Q1G3S4_ARATH,A8MQY9_ARATH,F4HWM1_ARATH At1g28395 (Uncharacterized protein At1g28395),Uncharacterized protein 10370,10360,10034,9559,9870 At1g28395 (Uncharacterized protein At1g28395),Uncharacterized protein mitochondrion [GO:0005739] locus:505006152;,locus:4010713673; AT1G28395,AT2G33847 NA NA NA NA NA NA NA NA ENOG411E7J2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pterin 4 alpha carbinolamine dehydratase NA NA NA NA NA NA NA ENOG411E7J1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0384800 protein (cDNA clone:002-157-A09, full insert sequence) (cDNA clone:J023034B07, full insert sequence) Q5VNY3 Q5VNY3_ORYSJ Os01g0384800 OsJ_01880 OSJNBb0093M23.18 OSNPB_010384800 ENOG411E7J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from NOG: Methyltransferase type NA NA NA NA NA NA NA ENOG411E7J5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family Os01g0972300 protein Q5JM96 Q5JM96_ORYSJ Os01g0972300 OsJ_04932 OSNPB_010972300 P0518C01.28 P0698H10.2 ENOG411E7JX T22D6_180 Q9FMY4,Q9LEY3 Y5316_ARATH,Q9LEY3_ARATH Uncharacterized protein At5g23160,At5g08240 (Transmembrane protein) (Uncharacterized protein At5g08240/T22D6_180) (Uncharacterized protein T22D6_180) 31161,29331 Uncharacterized protein At5g23160,At5g08240 (Transmembrane protein) (Uncharacterized protein At5g08240/T22D6_180) (Uncharacterized protein T22D6_180) integral component of membrane [GO:0016021] locus:2166751;,locus:2181574; AT5G23160,AT5G08240 NA NA NA NA NA NA NA NA ENOG411E7JK T5C2_110 Q9FYF4,Q9M178,A0A1I9LQ80,F4K1G4 FB77_ARATH,Q9M178_ARATH,A0A1I9LQ80_ARATH,F4K1G4_ARATH Putative F-box protein At1g67390,F-box/LRR protein (Uncharacterized protein T5C2_110),F-box/LRR protein 54474,13909,13950,14419 Putative F-box protein At1g67390,F-box/LRR protein (Uncharacterized protein T5C2_110),F-box/LRR protein locus:2019559;,locus:2102291;,locus:504954944; AT1G67390,AT3G43410,AT5G35945 Inherit from NOG: F-box LRR-repeat protein NA NA NA NA NA NA NA ENOG411E7JM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0575000 protein (cDNA clone:J023087D21, full insert sequence) Q69S83 Q69S83_ORYSJ Os02g0575000 OsJ_07235 OSNPB_020575000 P0703B01.16 ENOG411E7JD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0578800 protein (Fragment) A0A0P0V4E6 A0A0P0V4E6_ORYSJ Os01g0578800 OSNPB_010578800 ENOG411EIY9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0480100 protein Q69QS4 Q69QS4_ORYSJ Os09g0480100 OsJ_29770 OSNPB_090480100 P0463D04.7 P0463G11.22 ENOG411EIY5 CLE12 Q29PU4 CLE12_ARATH CLAVATA3/ESR (CLE)-related protein 12 [Cleaved into: CLE12p] FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16407446, ECO:0000269|PubMed:16902140}. 14044 CLAVATA3/ESR (CLE)-related protein 12 [Cleaved into: CLE12p] apoplast [GO:0048046]; extracellular space [GO:0005615]; receptor serine/threonine kinase binding [GO:0033612]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in seedlings, roots, flowers, stems and apex, and, to a lower extent, in leaves and siliques. {ECO:0000269|PubMed:12602871}. locus:505006210; AT1G68795 clavata3 esr-related 12 NA NA NA NA NA NA NA ENOG411EIY4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Metallothioneins have a high content of cysteine residues that bind various heavy metals Metallothionein-like protein 1B (Class I metallothionein-like protein 1B) (OsMT-I-1b),Metallothionein-like protein 1A (Class I metallothionein-like protein 1A) (OsMT-I-1a) (OsMT1a),Metallothionein-like protein 1, putative, expressed (Os12g0571000 protein) (cDNA, clone: J065056K16, full insert sequence) Q10N03,P0C5B3,Q2QNC4 MT1B_ORYSJ,MT1A_ORYSJ,Q2QNC4_ORYSJ MT1B Os03g0288000 LOC_Os03g17870 OsJ_10428,MT1A ERR26 MT-1 RGMT-1 Os11g0704500 LOC_Os11g47809 OsJ_34866,Os12g0571000 LOC_Os12g38290 OsJ_36584 OSNPB_120571000 FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals (Probable). Functions as metal chelator of nickel (Ni), cadmium (Cd), zinc (Zn) and copper (Cu). Possesses higher affinity for Ni and Cd ions compared to Zn and Cu ions (PubMed:23385446). {ECO:0000269|PubMed:23385446, ECO:0000305}.,FUNCTION: Metallothioneins have a high content of cysteine residues that bind various heavy metals. May be involved in ROS homeostasis. May act as reactive oxygen species (ROS) scavenger in response to salt stress. {ECO:0000250|UniProtKB:A2ZH20}. ENOG411EIY7 MDN11.13 Q9FI33,Q9FX16 Q9FI33_ARATH,Q9FX16_ARATH Copia-like polyprotein/retrotransposon (Gb|AAF63108.1),Copia-like polyprotein/retrotransposon (F12G12.10 protein) 42540,35289 Copia-like polyprotein/retrotransposon (Gb|AAF63108.1),Copia-like polyprotein/retrotransposon (F12G12.10 protein) locus:2162707;,locus:2009016; AT5G48050,AT1G34070 Inherit from KOG: Retrotransposon protein NA NA NA NA NA NA NA ENOG411EIY6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: rna polymerase NA NA NA NA NA NA NA ENOG411EIY1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIY0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR NA NA NA NA NA NA NA ENOG411EIY3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA GRF zinc finger Expressed protein (Os11g0256300 protein) (cDNA clone:J013060L21, full insert sequence),GRF zinc finger family protein (Os12g0186200 protein),Os05g0272001 protein,Os03g0274400 protein (Fragment),Os04g0245800 protein,GRF zinc finger family protein, expressed (Os10g0451400 protein),GRF zinc finger family protein (Os03g0612800 protein),Os12g0198650 protein,Os07g0103000 protein,Os05g0381301 protein,Os02g0508200 protein,Os08g0462000 protein,Os05g0509650 protein,Os04g0318700 protein Q53L34,Q2QWQ9,B9FJU1,C7J0N2,A3ARN5,Q7XDU8,Q75H59,Q2QWD8,Q0D973,A0A0P0WLS1,A0A0P0VJD8,A0A0P0XGH3,A0A0N7KL24,A0A0P0W8P8 Q53L34_ORYSJ,Q2QWQ9_ORYSJ,B9FJU1_ORYSJ,C7J0N2_ORYSJ,A3ARN5_ORYSJ,Q7XDU8_ORYSJ,Q75H59_ORYSJ,Q2QWD8_ORYSJ,Q0D973_ORYSJ,A0A0P0WLS1_ORYSJ,A0A0P0VJD8_ORYSJ,A0A0P0XGH3_ORYSJ,A0A0N7KL24_ORYSJ,A0A0P0W8P8_ORYSJ Os11g0256300 LOC_Os11g15000 Os11g0256300 OsJ_21319 OSNPB_110256300,Os12g0186200 LOC_Os12g08530 OsJ_35459 OSNPB_120186200,Os05g0272001 OsJ_17863 OSNPB_050272001,Os03g0274400 OSNPB_030274400,Os04g0245800 OsJ_14030 OSNPB_040245800,Os10g0451400 LOC_Os10g31360 OsJ_31732 OSNPB_100451400,OSJNBb0007E22.29 Os03g0612800 LOC_Os03g41640 OSNPB_030612800,Os12g0198650 LOC_Os12g09690 OSNPB_120198650,Os07g0103000 Os07g0103000 OSNPB_070103000,Os05g0381301 OSNPB_050381301,Os02g0508200 OSNPB_020508200,Os08g0462000 OSNPB_080462000,Os05g0509650 OSNPB_050509650,Os04g0318700 OSNPB_040318700 ENOG411EIY2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os03g0836600 protein (Fragment) A0A0P0W5Q9 A0A0P0W5Q9_ORYSJ Os03g0836600 OSNPB_030836600 ENOG411EIYM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os06g0261600 protein,Os06g0261900 protein A0A0P0WV92,A0A0P0WUY3 A0A0P0WV92_ORYSJ,A0A0P0WUY3_ORYSJ Os06g0261600 OSNPB_060261600,Os06g0261900 OSNPB_060261900 ENOG411EIYI Q570N6 Q570N6_ARATH Avr9/Cf-9 rapidly elicited protein 9087 Avr9/Cf-9 rapidly elicited protein locus:4515103729; AT5G54165 NA NA NA NA NA NA NA NA ENOG411EIYH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Photosystem I psaA/psaB protein NA NA NA NA NA NA NA ENOG411EIYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NADH:flavin oxidoreductase / NADH oxidase family NA NA NA NA NA NA NA ENOG411EIYJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIYD A0A1P8AUN8,B3H6R5 A0A1P8AUN8_ARATH,B3H6R5_ARATH Transmembrane protein 11910,7503 Transmembrane protein integral component of membrane [GO:0016021] locus:4515102540; AT1G16916 NA NA NA NA NA NA NA NA ENOG411EIYG Q9FY58 Q9FY58_ARATH Uncharacterized protein At5g11070 (Uncharacterized protein T5K6_60) 17288 Uncharacterized protein At5g11070 (Uncharacterized protein T5K6_60) locus:2184916; AT5G11070 NA NA NA NA NA NA NA NA ENOG411EIYF TRM32,ATOBGM F4HSD5,A0A1P8AVB8 TRM32_ARATH,A0A1P8AVB8_ARATH Protein TRM32 (TON1-RECRUITING MOTIF protein 32),GTP-binding protein Obg/CgtA 63905,66728 Protein TRM32 (TON1-RECRUITING MOTIF protein 32),GTP-binding protein Obg/CgtA locus:2024947; AT1G07620 GTP-binding protein Obg CgtA NA NA NA NA NA NA NA ENOG411EIYA Q3E6Q4 Q3E6Q4_ARATH Expressed protein 9307 Expressed protein locus:1006230537; AT5G49015 NA NA NA NA NA NA NA NA ENOG411EIYC Q9FJ28 Q9FJ28_ARATH Transmembrane protein 21295 Transmembrane protein integral component of membrane [GO:0016021] locus:2152970; AT5G41860 NA NA NA NA NA NA NA NA ENOG411EIYB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DVL family Os09g0306500 protein A0A0P0XLE0 A0A0P0XLE0_ORYSJ Os09g0306500 OSNPB_090306500 ENOG411EIYU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA resistance protein NA NA NA NA NA NA NA ENOG411EIYT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DEAD/DEAH box helicase NA NA NA NA NA NA NA ENOG411EIYW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EIYV Q9FX09 FB40_ARATH Putative F-box protein At1g47390 42507 Putative F-box protein At1g47390 ubiquitin-protein transferase activity [GO:0004842]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146] locus:2203756; AT1G47390 F-box associated NA NA NA NA NA NA NA ENOG411EIYS F4JNI5,F4JNI6 F4JNI5_ARATH,F4JNI6_ARATH Transmembrane protein, putative (DUF239),Carboxyl-terminal peptidase 45115,44945 Transmembrane protein, putative (DUF239),Carboxyl-terminal peptidase integral component of membrane [GO:0016021] locus:2117889;,locus:2117894; AT4G23350,AT4G23360 Domain of unknown function (DUF239) NA NA NA NA NA NA NA ENOG411EIYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF3548) NA NA NA NA NA NA NA ENOG411E7QN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7QM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Potato inhibitor I family Os02g0123900 protein Q6Z712 Q6Z712_ORYSJ Os02g0123900 OsJ_05191 OSNPB_020123900 P0575F10.21 ENOG411E7QK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E7QH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os03g0819300 protein) (cDNA clone:J023145D16, full insert sequence) Q10BG2 Q10BG2_ORYSJ LOC_Os03g60470 Os03g0819300 OsJ_13131 OSNPB_030819300 ENOG411E7QG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TPR NA NA NA NA NA NA NA ENOG411E7QC EGC2 Q9ZV52 EGC2_ARATH EG45-like domain containing protein 2 (Plant natriuretic peptide A) (AtEXPR3) (AtPNP-A) (Ath-ExpGamma-1.2) FUNCTION: Plays a systemic role in water and solute homeostasis. {ECO:0000269|PubMed:11965432, ECO:0000269|PubMed:14706834}. 14518 EG45-like domain containing protein 2 (Plant natriuretic peptide A) (AtEXPR3) (AtPNP-A) (Ath-ExpGamma-1.2) apoplast [GO:0048046]; cell wall [GO:0005618]; alternative respiration [GO:0010230]; systemic acquired resistance [GO:0009627] TISSUE SPECIFICITY: Expressed in unstressed leaves. {ECO:0000269|PubMed:11965432}. locus:2053983; AT2G18660 Rare lipoprotein A (RlpA)-like double-psi beta-barrel NA NA NA NA NA NA NA ENOG411E7QZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0167600 protein A0A0P0UYT4 A0A0P0UYT4_ORYSJ Os01g0167600 OSNPB_010167600 ENOG411E7QX psaJ P56769 PSAJ_ARATH Photosystem I reaction center subunit IX (PSI-J) FUNCTION: May help in the organization of the PsaE and PsaF subunits. {ECO:0000255|HAMAP-Rule:MF_00522}. 5009 Photosystem I reaction center subunit IX (PSI-J) chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem I [GO:0009522]; photosynthesis [GO:0015979] locus:504954686; ATCG00630 May help in the organization of the PsaE and PsaF subunits (By similarity) Photosystem I reaction center subunit IX (PSI-J) P12192 PSAJ_ORYSJ psaJ LOC_Osp1g00550 FUNCTION: May help in the organization of the PsaE and PsaF subunits. {ECO:0000255|HAMAP-Rule:MF_00522}. ENOG411E7QW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os03g0803200 protein A0A0P0W4F8 A0A0P0W4F8_ORYSJ Os03g0803200 OSNPB_030803200 ENOG411E7QU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os08g0143150 protein A0A0P0XBN8 A0A0P0XBN8_ORYSJ Os08g0143150 OSNPB_080143150 ENOG411E7QS Q9SMZ9 Y4331_ARATH Uncharacterized protein At4g33100 10540 Uncharacterized protein At4g33100 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex [GO:0000506] locus:2125914; AT4G33100 Uncharacterised protein family (UPF0203) Os09g0361700 protein (cDNA clone:002-156-G05, full insert sequence),Os09g0361700 protein (cDNA clone:001-111-D05, full insert sequence) B7F1Z9,Q6K4F7 B7F1Z9_ORYSJ,Q6K4F7_ORYSJ Os09g0361700 OSNPB_090361700,Os09g0361700 OJ1506_A04.1-1 OsJ_29069 OSNPB_090361700 ENOG411E7QR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Activator of Hsp90 ATPase N-terminal NA NA NA NA NA NA NA ENOG411E7QQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif Os01g0278000 protein A0A0P0V125 A0A0P0V125_ORYSJ Os01g0278000 OSNPB_010278000 ENOG411E7QP F4KFM8,Q84VW1 LEA65_ARATH,Q84VW1_ARATH Late embryogenesis abundant protein At5g17165,At3g03150 (Uncharacterized protein At3g03150) 13006,13316 Late embryogenesis abundant protein At5g17165,At3g03150 (Uncharacterized protein At3g03150) locus:4010713961;,locus:2097790; AT5G17165,AT3G03150 seed specific protein Bn15D1B OSJNba0093F12.14 protein (Os04g0598000 protein) (cDNA clone:J033068C09, full insert sequence) Q0JAI3 Q0JAI3_ORYSJ Os04g0598000 Os04g0598000 OsJ_16014 OSJNba0093F12.14 OSNPB_040598000 ENOG411E7Q8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: Phosphofructokinase Os01g0621500 protein A0A0P0V5C5 A0A0P0V5C5_ORYSJ Os01g0621500 OSNPB_010621500 ENOG411E7Q6 SMR13 F4IWB3 SMR13_ARATH Cyclin-dependent protein kinase inhibitor SMR13 (Protein SIAMESE-RELATED 13) FUNCTION: Probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. {ECO:0000269|PubMed:26546445}. 12129 Cyclin-dependent protein kinase inhibitor SMR13 (Protein SIAMESE-RELATED 13) protein kinase inhibitor activity [GO:0004860]; cell cycle [GO:0007049] locus:5019474757; AT3G20898 NA NA NA NA NA NA NA NA ENOG411E7Q2 O80943 O80943_ARATH Expressed protein (Uncharacterized protein At2g37750) 8797 Expressed protein (Uncharacterized protein At2g37750) locus:2040741; AT2G37750 NA NA NA NA NA NA NA NA ENOG411E7Q1 A0JPU2 A0JPU2_ARATH At1g52565 (Cytochrome P450 family protein) 14728 At1g52565 (Cytochrome P450 family protein) locus:504956218; AT1G52565 NA NA NA NA NA NA NA NA ENOG411E7Q0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) CASP-like protein 4D1 (OsCASPL4D1),CASP-like protein Q2R2T4,A0A0P0Y3B6 CSPLJ_ORYSJ,A0A0P0Y3B6_ORYSJ Os11g0549625 LOC_Os11g34730 OsJ_34213,Os11g0549625 OSNPB_110549625 ENOG411E7KT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Chaperone protein DNAj NA NA NA NA NA NA NA ENOG411E7KJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0715400 protein Q6ZHP6 Q6ZHP6_ORYSJ Os02g0715400 Os02g0715400 OJ1191_G08.15 OsJ_08142 OSNPB_020715400 ENOG411EEFX PXG7 F4I4P8,B3H7A9,A0A1P8AN27,A0A1P8ATG9 PXGL_ARATH,PXG7_ARATH,A0A1P8AN27_ARATH,A0A1P8ATG9_ARATH Probable inactive peroxygenase-like protein,Probable peroxygenase 7 (AtPXG7) (EC 1.11.2.3) (Caleosin-7),Caleosin-related family protein FUNCTION: Probable calcium-binding peroxygenase. May be involved in pollination. 1.11.2.3 23803,23851,25199,20035 Probable inactive peroxygenase-like protein,Probable peroxygenase 7 (AtPXG7) (EC 1.11.2.3) (Caleosin-7),Caleosin-related family protein lipid droplet [GO:0005811],extracellular region [GO:0005576]; lipase activity [GO:0016298]; metal ion binding [GO:0046872]; plant seed peroxidase activity [GO:1990137],integral component of membrane [GO:0016021] TISSUE SPECIFICITY: Expressed in pollen coat. {ECO:0000269|PubMed:11431566}. locus:2028095;,locus:2028105; AT1G23250,AT1G23240 Caleosin related protein NA NA NA NA NA NA NA ENOG411EEFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SRF-type transcription factor (DNA-binding and dimerisation domain) NA NA NA NA NA NA NA ENOG411EEFZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EEFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0651500 protein (Fragment),Os04g0651200 protein A0A0P0WFZ0,A0A0P0WFN8 A0A0P0WFZ0_ORYSJ,A0A0P0WFN8_ORYSJ Os04g0651500 OSNPB_040651500,Os04g0651200 OSNPB_040651200 ENOG411EEFU PRO1,PRO2 Q42449,Q42418 PROF1_ARATH,PROF2_ARATH Profilin-1 (allergen Ara t 8),Profilin-2 Abnormal seedling morphology-R. Meagher-2001 FUNCTION: Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG (By similarity). {ECO:0000250}. 14266,13998 Profilin-1 (allergen Ara t 8),Profilin-2 actin cytoskeleton [GO:0015629]; apoplast [GO:0048046]; cell cortex [GO:0005938]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; spindle [GO:0005819]; actin monomer binding [GO:0003785]; actin polymerization or depolymerization [GO:0008154]; inflorescence development [GO:0010229]; lateral root development [GO:0048527]; leaf development [GO:0048366]; sequestering of actin monomers [GO:0042989]; unidimensional cell growth [GO:0009826],actin cytoskeleton [GO:0015629]; cell cortex [GO:0005938]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; plasma membrane [GO:0005886]; actin monomer binding [GO:0003785]; actin polymerization or depolymerization [GO:0008154]; inflorescence development [GO:0010229]; lateral root development [GO:0048527]; leaf development [GO:0048366]; sequestering of actin monomers [GO:0042989] TISSUE SPECIFICITY: Ubiquitous. locus:2051965;,locus:2118324; AT2G19760,AT4G29350 Binds to actin and affects the structure of the cytoskeleton. At high concentrations profilin prevents the polymerization of actin whereas it enhances it at low concentrations. By NA NA NA NA NA NA NA ENOG411EEFV PYL12,PYL11 Q9FJ49,Q9FJ50 PYL12_ARATH,PYL11_ARATH Abscisic acid receptor PYL12 (PYR1-like protein 12) (Regulatory components of ABA receptor 6),Abscisic acid receptor PYL11 (PYR1-like protein 11) (Regulatory components of ABA receptor 5) FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. {ECO:0000250|UniProtKB:O49686}.,FUNCTION: Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA (By similarity). Suppresses the phosphatase activity of TOPP1 in a dose-dependent manner in vitro (PubMed:26943172). {ECO:0000250|UniProtKB:O49686, ECO:0000269|PubMed:26943172}. 17633,17805 Abscisic acid receptor PYL12 (PYR1-like protein 12) (Regulatory components of ABA receptor 6),Abscisic acid receptor PYL11 (PYR1-like protein 11) (Regulatory components of ABA receptor 5) cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; abscisic acid binding [GO:0010427]; protein homodimerization activity [GO:0042803]; protein phosphatase inhibitor activity [GO:0004864]; receptor activity [GO:0004872]; abscisic acid-activated signaling pathway [GO:0009738] locus:2152430;,locus:2152420; AT5G45870,AT5G45860 Bet v I allergen family protein NA NA NA NA NA NA NA ENOG411EEFW MYH9.15 Q9FIB3 Q9FIB3_ARATH Gb|AAD24366.1 24477 Gb|AAD24366.1 locus:2178178; AT5G09940 Protein of unknown function (DUF1635) NA NA NA NA NA NA NA ENOG411EEFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA C2 domain NA NA NA NA NA NA NA ENOG411EEFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Zinc finger C3HC4 type (RING finger) NA NA NA NA NA NA NA ENOG411EEFR Q6NLZ1,A0A1I9LSZ8 Q6NLZ1_ARATH,A0A1I9LSZ8_ARATH At3g07195 (RPM1-interacting protein 4 (RIN4) family protein) (Uncharacterized protein At3g07195),RPM1-interacting protein 4 (RIN4) family protein 24013,25447 At3g07195 (RPM1-interacting protein 4 (RIN4) family protein) (Uncharacterized protein At3g07195),RPM1-interacting protein 4 (RIN4) family protein locus:504955684; AT3G07195 Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411EEFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ANK NA NA NA NA NA NA NA ENOG411EEFM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEFN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: (ABC) transporter NA NA NA NA NA NA NA ENOG411EEFH Q9FX58 Q9FX58_ARATH At1g13390 (T6J4.14 protein) (Translocase subunit seca) (Uncharacterized protein At1g13390) 19176 At1g13390 (T6J4.14 protein) (Translocase subunit seca) (Uncharacterized protein At1g13390) locus:2009937; AT1G13390 NA NA NA NA NA NA NA NA ENOG411EEFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEFJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EEFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquitin-binding WIYLD domain NA NA NA NA NA NA NA ENOG411EEFG T20K12.280 Q9M2C6 Q9M2C6_ARATH Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein (Uncharacterized protein T20K12.280) 80731 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein (Uncharacterized protein T20K12.280) integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transferase activity [GO:0016740] locus:2098961; AT3G61380 NA NA NA NA NA NA NA NA ENOG411EEFA PPA2 P21216 IPYR2_ARATH Soluble inorganic pyrophosphatase 2 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 2) (PPase 2) 3.6.1.1 24671 Soluble inorganic pyrophosphatase 2 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 2) (PPase 2) cytoplasm [GO:0005737]; inorganic diphosphatase activity [GO:0004427]; magnesium ion binding [GO:0000287]; phosphate-containing compound metabolic process [GO:0006796] locus:2062195; AT2G18230 inorganic NA NA NA NA NA NA NA ENOG411EEF8 NHX8 Q3YL57,F4HW96 NHX8_ARATH,F4HW96_ARATH Sodium/hydrogen exchanger 8 (Na(+)/H(+) exchanger 8) (NHE-8) (Protein SALT OVERLY SENSITIVE 1B),Na+/H+ exchanger 8 Li+ hypersensitive. Under low Li+ concentrations germination of mutant seeds and elongation of roots were significantly reduced. Sensitive to lithium-X. Wang-2007 FUNCTION: May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity (By similarity). {ECO:0000250}. 83476,80993 Sodium/hydrogen exchanger 8 (Na(+)/H(+) exchanger 8) (NHE-8) (Protein SALT OVERLY SENSITIVE 1B),Na+/H+ exchanger 8 chloroplast envelope [GO:0009941]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; potassium:proton antiporter activity [GO:0015386]; lithium ion export [GO:0010352]; potassium ion transmembrane transport [GO:0071805]; regulation of intracellular pH [GO:0051453]; sodium ion transport [GO:0006814],integral component of membrane [GO:0016021]; solute:proton antiporter activity [GO:0015299] locus:2006762; AT1G14660 Sodium/hydrogen exchanger family NA NA NA NA NA NA NA ENOG411EEF5 C0LGD8,Q9ZQR3,Q9ZQQ7,A0A1P8B2S5 Y1755_ARATH,Y2451_ARATH,Y2144_ARATH,A0A1P8B2S5_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07550 (EC 2.7.11.1),Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 (EC 2.7.11.1),Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein 2.7.11.1 96785,97635,99662,98639 Probable LRR receptor-like serine/threonine-protein kinase At1g07550 (EC 2.7.11.1),Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 (EC 2.7.11.1),Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 (EC 2.7.11.1),Leucine-rich repeat protein kinase family protein integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674],integral component of membrane [GO:0016021]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2024987;,locus:2055165;,locus:2055160; AT1G07550,AT2G14510,AT2G14440 leucine-rich repeat protein kinase NA NA NA NA NA NA NA ENOG411EEF0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoenolpyruvate carboxykinase NA NA NA NA NA NA NA ENOG411EEF3 Q9FK10 Y5332_ARATH Probable inactive receptor kinase At5g53320 66863 Probable inactive receptor kinase At5g53320 integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; protein kinase activity [GO:0004672] locus:2154227; AT5G53320 Leucine rich repeat N-terminal domain NA NA NA NA NA NA NA ENOG411EM21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA RNA recognition motif. (a.k.a. RRM RBD or RNP domain) Heterogeneous nuclear ribonucleoprotein A2/B1-like (Os01g0614500 protein) Q5ZDX8 Q5ZDX8_ORYSJ Os01g0614500 Os01g0614500 OSNPB_010614500 P0410E01.38 ENOG411EGK9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGK8 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGK2 Q1PFD8 Q1PFD8_ARATH Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Protease inhibitor/seed storage/lipid transfer protein family protein) 15512 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (Protease inhibitor/seed storage/lipid transfer protein family protein) peptidase activity [GO:0008233] locus:2035052; AT1G73560 Protease inhibitor seed storage lipid transfer protein NA NA NA NA NA NA NA ENOG411EGK5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411EGK7 O81873 O81873_ARATH At4g33560 (Uncharacterized protein AT4g33560) (Uncharacterized protein T16L1.50) (Wound-responsive family protein) 10303 At4g33560 (Uncharacterized protein AT4g33560) (Uncharacterized protein T16L1.50) (Wound-responsive family protein) locus:2134188; AT4G33560 Wound-induced protein NA NA NA NA NA NA NA ENOG411EGKN CLE9 Q9FZE4,A0A1P8AX22 CLE9_ARATH,A0A1P8AX22_ARATH CLAVATA3/ESR (CLE)-related protein 9 [Cleaved into: CLE9p],CLAVATA3/ESR-RELATED 9 FUNCTION: Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance. {ECO:0000269|PubMed:16407446, ECO:0000269|PubMed:16489133, ECO:0000269|PubMed:16902140}. 13966,19139 CLAVATA3/ESR (CLE)-related protein 9 [Cleaved into: CLE9p],CLAVATA3/ESR-RELATED 9 extracellular space [GO:0005615]; cell-cell signaling involved in cell fate commitment [GO:0045168]; multicellular organism development [GO:0007275] TISSUE SPECIFICITY: Mostly expressed in leaves, flowers, stems and apex, and, to a lower extent, in seedlings, roots, siliques and pollen. {ECO:0000269|PubMed:12602871}. locus:2197905; AT1G26600 CLAVATA3 ESR-related 9 NA NA NA NA NA NA NA ENOG411EGKC MHK7.9 Q1PDP3,Q9FKS1 Q1PDP3_ARATH,Q9FKS1_ARATH Transmembrane protein 27775,21209 Transmembrane protein integral component of membrane [GO:0016021] locus:2164511; AT5G40860 NA NA NA NA NA NA NA NA ENOG411EGKE Q9SU32 Q9SU32_ARATH AIR1A-like protein (At4g12530) (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Protease inhibitor/seed storage/lipid transfer protein family protein) 12365 AIR1A-like protein (At4g12530) (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) (Protease inhibitor/seed storage/lipid transfer protein family protein) endoplasmic reticulum [GO:0005783]; plasmodesma [GO:0009506]; peptidase activity [GO:0008233] locus:2135570; AT4G12530 AAI NA NA NA NA NA NA NA ENOG411EGKX F22O6_70 Q9SVD6 Q9SVD6_ARATH At3g52550 (Transcription repressor OFP15-like protein) (Uncharacterized protein F22O6_70) 20497 At3g52550 (Transcription repressor OFP15-like protein) (Uncharacterized protein F22O6_70) locus:2079979; AT3G52550 NA NA NA NA NA NA NA NA ENOG411DVB6 O65693 RBFA_ARATH Probable ribosome-binding factor A, chloroplastic 24289 Probable ribosome-binding factor A, chloroplastic chloroplast [GO:0009507]; ribosome biogenesis [GO:0042254]; rRNA processing [GO:0006364] locus:2139529; AT4G34730 ribosome-binding factor A Os06g0137600 protein (Ribosome-binding factor A protein-like) (cDNA clone:006-204-C10, full insert sequence) (cDNA clone:J013092J10, full insert sequence) (cDNA clone:J013166G10, full insert sequence) Q5VPH3 Q5VPH3_ORYSJ P0548D03.37-1 Os06g0137600 OsJ_20053 OSJNBa0041F13.7-1 OSNPB_060137600 ENOG411DVB7 Q6DBN1 Y4845_ARATH BTB/POZ domain-containing protein At4g08455 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. PATHWAY: Protein modification; protein ubiquitination. 27328 BTB/POZ domain-containing protein At4g08455 cytoplasm [GO:0005737]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GO:0042787]; regulation of proteolysis [GO:0030162] locus:504955382; AT4G08455 BTB POZ domain-containing protein Os07g0258700 protein (Speckle-type POZ protein-like protein) (cDNA clone:001-206-G01, full insert sequence) (cDNA clone:J023015F07, full insert sequence) Q7F241 Q7F241_ORYSJ OJ1354_H07.114 OJ1370_E02.103 Os07g0258700 OSNPB_070258700 ENOG411DVB0 LST8-1,LST8-2 Q9LV27,F4IIK6,F4J7K1 Q9LV27_ARATH,F4IIK6_ARATH,F4J7K1_ARATH Putative WD-repeat protein (Transducin/WD40 repeat-like superfamily protein) (WD-repeat protein, putative),Transducin/WD40 repeat-like superfamily protein lst8-1 mutants exhibit slower growth high branching and abnormal development of flowers. Mutants show early senescence when shifted to long days and fail to accumulate raffinose. Mutants contain high levels of amino-acids and starch. R-ATH-3371571; 34310,35952,25227 Putative WD-repeat protein (Transducin/WD40 repeat-like superfamily protein) (WD-repeat protein, putative),Transducin/WD40 repeat-like superfamily protein endosome [GO:0005768]; membrane [GO:0016020]; TORC1 complex [GO:0031931]; TORC2 complex [GO:0031932]; long-day photoperiodism [GO:0048571]; regulation of actin cytoskeleton organization [GO:0032956]; regulation of inositol biosynthetic process [GO:1900088]; regulation of raffinose biosynthetic process [GO:1900091]; TOR signaling [GO:0031929],TORC1 complex [GO:0031931]; TORC2 complex [GO:0031932]; regulation of actin cytoskeleton organization [GO:0032956]; TOR signaling [GO:0031929] locus:2092722;,locus:2052606; AT3G18140,AT2G22040 WD domain G-beta repeat Expressed protein (Os03g0681700 protein) (WD-repeat protein pop3, putative, expressed) Q9AYE4 Q9AYE4_ORYSJ OSJNBb0070O09.2 LOC_Os03g47780 Os03g0681700 Os03g47780 OsJ_12123 OSNPB_030681700 ENOG411DVB1 DAU1 Q9LZ87,B3H571 Q9LZ87_ARATH,B3H571_ARATH TRM32-like protein (DUF3741) (Uncharacterized protein T1E22_150),TRM32-like protein (DUF3741) 95228,85234 TRM32-like protein (DUF3741) (Uncharacterized protein T1E22_150),TRM32-like protein (DUF3741) pollen sperm cell differentiation [GO:0048235] locus:2180142; AT5G02390 Protein of unknown function (DUF3741) Expressed protein (Os12g0570500 protein) Q2QNC7 Q2QNC7_ORYSJ Os12g0570500 LOC_Os12g38260 Os12g0570500 OSNPB_120570500 ENOG411DVB2 MAC9.6 Q8VZ21 Q8VZ21_ARATH Stress up-regulated Nod 19 protein (Uncharacterized protein At5g61820) 53071 Stress up-regulated Nod 19 protein (Uncharacterized protein At5g61820) integral component of membrane [GO:0016021]; vacuole [GO:0005773] locus:2159178; AT5G61820 Stress up-regulated Nod 19 Os08g0538600 protein (Putative MtN19) (cDNA clone:J013121M08, full insert sequence) Q6ZD31 Q6ZD31_ORYSJ P0666G10.103 Os08g0538600 OsJ_02924 OSNPB_080538600 P0665C04.36 ENOG411DVB3 ETFQO O22854,A0A1P8B0T2 ETFQO_ARATH,A0A1P8B0T2_ARATH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial (ETF-QO) (ETF-ubiquinone oxidoreductase) (EC 1.5.5.1),Electron-transfer flavoprotein:ubiquinone oxidoreductase DISRUPTION PHENOTYPE: Accelerated senescence and short siliques with reduced seed number. {ECO:0000269|PubMed:16055629}. Reduced female fertile. No phenotype when grown in short days.,Reduced female fertile. Normal phenotype when grown under short/long days. When grown in the dark after 10 days early senescence followed by death.,Reduced female fertile in short days. In dark plants show early sensecence and die before wild type sibs. Reduced female fertility; Early senescence in the dark-C. Leaver-2005 FUNCTION: Accepts electrons from ETF and reduces ubiquinone. May act downstream of IVD and D2HGDH in the degradation of phytol or chlorophyll during dark-induced senescence and sugar starvation. {ECO:0000269|PubMed:16055629, ECO:0000269|PubMed:20501910}. ARA:AT2G43400-MONOMER; R-ATH-611105; 1.5.5.1 70128,64713 Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial (ETF-QO) (ETF-ubiquinone oxidoreductase) (EC 1.5.5.1),Electron-transfer flavoprotein:ubiquinone oxidoreductase integral component of mitochondrial inner membrane [GO:0031305]; mitochondrial electron transfer flavoprotein complex [GO:0017133]; mitochondrion [GO:0005739]; 4 iron, 4 sulfur cluster binding [GO:0051539]; electron carrier activity [GO:0009055]; electron-transferring-flavoprotein dehydrogenase activity [GO:0004174]; metal ion binding [GO:0046872]; oxidoreductase activity, oxidizing metal ions with flavin as acceptor [GO:0043783]; ubiquinone binding [GO:0048039]; leucine catabolic process [GO:0006552]; respiratory electron transport chain [GO:0022904]; response to absence of light [GO:0009646],oxidoreductase activity [GO:0016491] locus:2058183; AT2G43400 Electron transfer flavoprotein-ubiquinone Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial (ETF-QO) (ETF-ubiquinone oxidoreductase) (EC 1.5.5.1),Os10g0516300 protein (Fragment) Q337B8,A0A0P0XW74 ETFQO_ORYSJ,A0A0P0XW74_ORYSJ Os10g0516300 LOC_Os10g37210 OSJNBa0076F20.3,Os10g0516300 OSNPB_100516300 FUNCTION: Accepts electrons from ETF and reduces ubiquinone. {ECO:0000250}. ENOG411DVB8 TCP9 O64647 TCP9_ARATH Transcription factor TCP9 37631 Transcription factor TCP9 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; negative regulation of leaf senescence [GO:1900056]; regulation of cell size [GO:0008361]; regulation of transcription, DNA-templated [GO:0006355]; root development [GO:0048364]; transcription, DNA-templated [GO:0006351] TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. locus:2043659; AT2G45680 transcription factor Transcription factor PCF2 Q6ZBH6 PCF2_ORYSJ PCF2 Os08g0544800 LOC_Os08g43160 OsJ_027020 P0623F08.31 FUNCTION: Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. ENOG411DVB9 GLCAK1,GLCAK2,GLCAK Q93ZC9,Q9LY82,A0A1I9LRK4 GLAK1_ARATH,GLAK2_ARATH,A0A1I9LRK4_ARATH Glucuronokinase 1 (AtGlcAK1) (EC 2.7.1.43),Probable glucuronokinase 2 (EC 2.7.1.43),Glucuronokinase G FUNCTION: Sugar-1-kinase with a strict substrate specificity for D-glucuronic acid and ATP. Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in a salvage pathway for glucuronic acid. {ECO:0000269|PubMed:19951951}.,FUNCTION: Sugar-1-kinase with a strict substrate specificity for D-glucuronic acid and ATP. Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in a salvage pathway for glucuronic acid (By similarity). {ECO:0000250}. MetaCyc:AT3G01640-MONOMER; 2.7.1.43; Pentose and glucuronate interconversions (00040),Amino sugar and nucleotide sugar metabolism (00520),Metabolic pathways (01100),Ascorbate and aldarate metabolism (00053) 2.7.1.43 40076,40861,42093 Glucuronokinase 1 (AtGlcAK1) (EC 2.7.1.43),Probable glucuronokinase 2 (EC 2.7.1.43),Glucuronokinase G cytosol [GO:0005829]; ATP binding [GO:0005524]; glucuronokinase activity [GO:0047940]; metal ion binding [GO:0046872]; poly(U) RNA binding [GO:0008266]; cell wall biogenesis [GO:0042546]; inositol metabolic process [GO:0006020]; pollen tube development [GO:0048868],cytosol [GO:0005829]; ATP binding [GO:0005524]; glucuronokinase activity [GO:0047940]; metal ion binding [GO:0046872]; carbohydrate metabolic process [GO:0005975]; cell wall biogenesis [GO:0042546],ATP binding [GO:0005524]; kinase activity [GO:0016301] TISSUE SPECIFICITY: Highly expressed in pollen. Detected in seedlings, inflorescences, seeds, leaves and roots. {ECO:0000269|PubMed:19951951}. locus:2084208;,locus:2145723; AT3G01640,AT5G14470 glucuronokinase activity GHMP kinases putative ATP-binding protein, expressed (Os11g0217300 protein) Q2R8T7 Q2R8T7_ORYSJ LOC_Os11g11060 Os11g0217300 OsJ_33378 OSNPB_110217300 ENOG411DVBU Q9ZVM9,Q9LNN0 Y1461_ARATH,Q9LNN0_ARATH Probable serine/threonine-protein kinase At1g54610 (EC 2.7.11.1),F8L10.9 protein (Protein kinase superfamily protein) R-ATH-674695;R-ATH-6796648; 2.7.11.1 63288,77507 Probable serine/threonine-protein kinase At1g54610 (EC 2.7.11.1),F8L10.9 protein (Protein kinase superfamily protein) nucleus [GO:0005634]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468],nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein phosphorylation [GO:0006468] locus:2037042; AT1G54610,AT1G53050 serine threonine-protein kinase Os01g0367700 protein (Putative CRK1 protein) (Putative cyclin dependent kinase C),Os03g0349200 protein,Os11g0218619 protein Q93W00,A0A0P0VXG3,A0A0P0Y0B2 Q93W00_ORYSJ,A0A0P0VXG3_ORYSJ,A0A0P0Y0B2_ORYSJ P0560B06.11 Os01g0367700 B1329D01.21 OSNPB_010367700 P0043B10.7,Os03g0349200 OSNPB_030349200,Os11g0218619 OSNPB_110218619 ENOG411DVBV Q8GYC5,Q8VYQ4,F4I978,F4I974 Q8GYC5_ARATH,Q8VYQ4_ARATH,F4I978_ARATH,F4I974_ARATH At1g24268 (BZIP transcription factor, putative (DUF1664)),At1g24265/At1g24265 (BZIP transcription factor, putative (DUF1664)),BZIP transcription factor, putative (DUF1664) 36680,37188,36904,41231 At1g24268 (BZIP transcription factor, putative (DUF1664)),At1g24265/At1g24265 (BZIP transcription factor, putative (DUF1664)),BZIP transcription factor, putative (DUF1664) integral component of membrane [GO:0016021],integral component of mitochondrial outer membrane [GO:0031307] locus:1005716745;,locus:504956223; AT1G24267,AT1G24265 Protein of unknown function (DUF1664) Os01g0100800 protein Q655L6 Q655L6_ORYSJ Os01g0100800 OsJ_00008 OSNPB_010100800 P0672D08.7 ENOG411DVBR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF3133) Extra-large G-protein-like (Os06g0524300 protein),Extra-large G-protein-like (Os02g0258300 protein) Q654D6,Q6K2T0 Q654D6_ORYSJ,Q6K2T0_ORYSJ Os06g0524300 OJ1616_B03.21 OSJNBa0009J19.50 OSNPB_060524300,Os02g0258300 OsJ_06137 OSJNBa0060K08.3 OSNPB_020258300 ENOG411DVBS PAP29 Q9FMK9 PPA29_ARATH Probable inactive purple acid phosphatase 29 43548 Probable inactive purple acid phosphatase 29 extracellular region [GO:0005576]; acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872] TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:16244908}. locus:2161937; AT5G63140 inactive purple acid phosphatase Os09g0533300 protein (PTS protein-like) Q69SH3 Q69SH3_ORYSJ Os09g0533300 Os09g0533300 OJ1112_E07.8 OSNPB_090533300 P0515E01.27 ENOG411DVBX F4JP07 F4JP07_ARATH Mitochondrial substrate carrier family protein 69393 Mitochondrial substrate carrier family protein integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; transmembrane transporter activity [GO:0022857]; mitochondrial transport [GO:0006839] locus:2123096; AT4G11440 Mitochondrial carrier protein Mitochondrial substrate carrier protein-like (Os02g0665200 protein) Q6ESH9 Q6ESH9_ORYSJ Os02g0665200 Os02g0665200 OJ1486_E07.1 OSNPB_020665200 P0461B08.16 ENOG411DVBD RNS1,RNS3 P42813,P42815,Q9XI64 RNS1_ARATH,RNS3_ARATH,Q9XI64_ARATH Ribonuclease 1 (EC 3.1.27.1),Ribonuclease 3 (EC 3.1.27.1),F7A19.32 protein (Ribonuclease T2 family protein) FUNCTION: May remobilize phosphate, particularly when cells senesce or when phosphate becomes limiting. 3.1.27.1 25397,25626,25689 Ribonuclease 1 (EC 3.1.27.1),Ribonuclease 3 (EC 3.1.27.1),F7A19.32 protein (Ribonuclease T2 family protein) cell wall [GO:0005618]; extracellular region [GO:0005576]; plasma membrane [GO:0005886]; ribonuclease activity [GO:0004540]; ribonuclease T2 activity [GO:0033897]; RNA binding [GO:0003723]; anthocyanin-containing compound biosynthetic process [GO:0009718]; cellular response to phosphate starvation [GO:0016036]; response to wounding [GO:0009611],ribonuclease T2 activity [GO:0033897]; RNA binding [GO:0003723] locus:2056755;,locus:2200665;,locus:2035871; AT2G02990,AT1G26820,AT1G14220 Ribonuclease Os08g0434100 protein (Ribonuclease) (EC 3.1.27.1) (cDNA clone:006-204-G01, full insert sequence) Q9FEG7 Q9FEG7_ORYSJ Os08g0434100 OSNPB_080434100 P0413H11.4 P0431A03.26 ENOG411DVBE NDP1 Q9LZL9 Q9LZL9_ARATH At5g02130 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein T7H20_180) 45764 At5g02130 (Tetratricopeptide repeat (TPR)-like superfamily protein) (Uncharacterized protein T7H20_180) mitochondrion [GO:0005739]; meristem maintenance [GO:0010073]; protein localization involved in auxin polar transport [GO:1901703] locus:2185208; AT5G02130 NA Os05g0457700 protein Q65XG4 Q65XG4_ORYSJ Os05g0457700 Os05g0457700 OJ1362_D02.3 OsJ_18795 OSNPB_050457700 ENOG411DVBF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NB-ARC domain Os06g0619000 protein (Putative disease resistance protein) Q69XP7 Q69XP7_ORYSJ Os06g0619000 Os06g0619000 OSNPB_060619000 P0012B02.21 ENOG411DVBC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pentatricopeptide repeat-containing protein Os07g0203900 protein A0A0P0X3I4 A0A0P0X3I4_ORYSJ Os07g0203900 OSNPB_070203900 ENOG411DVBM TPS1 Q9SYM4 TPS1_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 1) (AtTPS1) DISRUPTION PHENOTYPE: Embryonic lethality. {ECO:0000269|PubMed:11851922, ECO:0000269|PubMed:15181208, ECO:0000269|PubMed:15667326, ECO:0000269|PubMed:16553896}. Arrest at torpedo stage during embryo development. Can germinate after cold stratification and extended incubation. Embryos show increased deposition of cell wall material.,Enzymatic activities that typically peak during early maturation of wildtype embryos are also detected in the mutant at 12 DAF. OF these both NAD-malic E and IDH activities then decreases significantly at 15 DAF and the expected drop in PFK activity is delayed.,G6PDH 6PGDH AGPase and GK activities which typically peak at 9-12 DAF in wildtype all show a reduction at the equivalent temporal stage in the mutant.,In contrast to the embryo the endosperm of homozygous seeds developed normally up until seed maturation. During this period starch accumulated transiently in the endosperm cells of both the mutant and wild type. In desiccating homozygous seeds gaps were observed in the aleurone a persistent layer of the endosperm. These cells appeared devoid of their endoplasm.,In the heterozygote plants embryos from a single silique were essentially indistinguishable early in the morphogenic phase of development. However beyond the heart stage a segregation ratio emerged as approximately 25% of the seeds began to develop more slowly. Development was progressively retarded eventually arresting at the torpedo stage.,The homozygous progeny is embryo-lethal.,With the exception of ADH all other enzymatic activities increase with the onset of maturation. Embryo defective; Cotyledon-I. Graham-2002 FUNCTION: Required for normal embryo development, vegetative growth and transition to flowering. Regulates embryo growth, cell wall deposition, starch and sucrose degradation, but not cell differentiation. Involved in the regulation of glucose sensing and signaling genes during plant development. {ECO:0000269|PubMed:11520870, ECO:0000269|PubMed:11851922, ECO:0000269|PubMed:11978181, ECO:0000269|PubMed:12748379, ECO:0000269|PubMed:15181208, ECO:0000269|PubMed:15667325, ECO:0000269|PubMed:15667326, ECO:0000269|PubMed:16553896, ECO:0000269|PubMed:9681010}. 2.4.1.15; 2.4.1.15 105976 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 1) (AtTPS1) cell wall [GO:0005618]; extracellular region [GO:0005576]; vacuole [GO:0005773]; alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [GO:0003825]; phosphatase activity [GO:0016791]; cell division [GO:0051301]; embryo development ending in seed dormancy [GO:0009793]; plant-type cell wall biogenesis [GO:0009832]; sugar mediated signaling pathway [GO:0010182]; trehalose biosynthetic process [GO:0005992]; trehalose metabolic process [GO:0005991]; trehalose metabolism in response to stress [GO:0070413] DEVELOPMENTAL STAGE: Up-regulated during seed development. {ECO:0000269|PubMed:11851922}. TISSUE SPECIFICITY: Expressed in seedlings, leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:11520870, ECO:0000269|PubMed:11851922, ECO:0000269|PubMed:9681010}. locus:2202990; AT1G78580 Alphaalpha-trehalose-phosphate synthase UDP-forming Os05g0518600 protein (Fragment) C7J2A4 C7J2A4_ORYSJ Os05g0518600 Os05g0518600 OSNPB_050518600 ENOG411DVBI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0369500 protein Q0J286,Q6H5L2 Q0J286_ORYSJ,Q6H5L2_ORYSJ Os09g0369500 OSNPB_090369500,OJ1759_F09.36-2 Os09g0369500 OSNPB_090369500 ENOG411DVBJ Q9FVQ5,Q9SY14,A0A1P8B4I8 CSCL1_ARATH,CSCL2_ARATH,A0A1P8B4I8_ARATH CSC1-like protein At1g32090,CSC1-like protein At4g02900,ERD (Early-responsive to dehydration stress) family protein FUNCTION: Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}. 93133,89779,88032 CSC1-like protein At1g32090,CSC1-like protein At4g02900,ERD (Early-responsive to dehydration stress) family protein Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ion transport [GO:0006811],integral component of membrane [GO:0016021]; ion transport [GO:0006811],integral component of membrane [GO:0016021] locus:2031735;,locus:2140210; AT1G32090,AT4G02900 Domain of unknown function DUF221 Early-responsive to dehydration protein, putative, expressed (Os10g0579100 protein),Os05g0393800 protein (cDNA clone:J023005F15, full insert sequence) Q7XBT3,Q6AU79 Q7XBT3_ORYSJ,Q6AU79_ORYSJ LOC_Os10g42820 Os10g0579100 OsJ_32597 OSJNBa0056G17.14 OSNPB_100579100,Os05g0393800 OSJNBa0014C03.4 OSNPB_050393800 ENOG411DVBK EMB2016 F4J8G7 F4J8G7_ARATH Embryo defective 2016 Embryo defective; Globular-D. Meinke-2003 234225 Embryo defective 2016 locus:2078082; AT3G05680 Inherit from KOG: kiaa1429 Os03g0554900 protein,Os03g0554950 protein A0A0P0VZC4,A0A0P0W038 A0A0P0VZC4_ORYSJ,A0A0P0W038_ORYSJ Os03g0554900 OSNPB_030554900,Os03g0554950 OSNPB_030554950 ENOG411E6B9 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0511200 protein,Os09g0511300 protein A0A0P0XNZ0,A0A0P0XQ16 A0A0P0XNZ0_ORYSJ,A0A0P0XQ16_ORYSJ Os09g0511200 OSNPB_090511200,Os09g0511300 OSNPB_090511300 ENOG411E6B6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Plastocyanin-like domain Os07g0165900 protein (Putative blue copper protein) Q7F0P9 Q7F0P9_ORYSJ P0039H02.127 OJ1641_C04.111 Os07g0165900 OsJ_23212 OSNPB_070165900 ENOG411ECW4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13-beta-glucan synthase component Uncharacterized protein Q8HCN4 Q8HCN4_ORYSJ orf241 ENOG411EE72 Q9ZUU7 PP174_ARATH Pentatricopeptide repeat-containing protein At2g28050 52931 Pentatricopeptide repeat-containing protein At2g28050 mitochondrion [GO:0005739]; endonuclease activity [GO:0004519]; RNA binding [GO:0003723]; mitochondrial mRNA 5'-end processing [GO:0090617]; RNA modification [GO:0009451] locus:2046218; AT2G28050 Pentatricopeptide repeat-containing protein NA NA NA NA NA NA NA ENOG411EE78 CCR2,CCR1 Q9SAH9,Q9S9N9,A0A1P8AWR1,A0A1P8ASX1,A0A1P8ASX3,A0A1P8ASX8,A0A1P8AT30,A8MQW5 CCR2_ARATH,CCR1_ARATH,A0A1P8AWR1_ARATH,A0A1P8ASX1_ARATH,A0A1P8ASX3_ARATH,A0A1P8ASX8_ARATH,A0A1P8AT30_ARATH,A8MQW5_ARATH Cinnamoyl-CoA reductase 2 (AtCCR2) (EC 1.2.1.44),Cinnamoyl-CoA reductase 1 (AtCCR1) (EC 1.2.1.44) (Protein IRREGULAR XYLEM 4),Cinnamoyl coa reductase,Cinnamoyl coa reductase 1 DISRUPTION PHENOTYPE: Dwarf phenotype, delayed senescence, collapsed xylem and significant reduction of lignin content in ecotype Columbia (PubMed:19674336). Retarded growth, impaired upright growth, altered leaf morphology, dark green leaves, collapsed xylem and strong decrease in lignin content in ecotype Landsberg erecta (PubMed:11389761). {ECO:0000269|PubMed:11389761, ECO:0000269|PubMed:16153410, ECO:0000269|PubMed:18046574, ECO:0000269|PubMed:19674336}. Slow growth; Inflorescence stems cannot maintain an upright stance; Altered leaf morphology; Dark green; Collapsed xylem; Reduced fertility at high temperature-S. Turner-2001 FUNCTION: Cinnamoyl-CoA reductase probably involved in the formation of phenolic compounds associated with the hypersensitive response. Seems not to be involved in lignin biosynthesis. {ECO:0000269|PubMed:11430991}.,FUNCTION: Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. {ECO:0000269|PubMed:11389761, ECO:0000269|PubMed:11430991, ECO:0000269|PubMed:16122934, ECO:0000269|PubMed:16153410, ECO:0000269|PubMed:18046574, ECO:0000269|PubMed:19674336, ECO:0000269|PubMed:20829305}. PATHWAY: Aromatic compound metabolism; phenylpropanoid biosynthesis. MetaCyc:AT1G15950-MONOMER; 1.2.1.44; 1.2.1.44 36618,37489,29619,27009,30700,30008,32216,37187 Cinnamoyl-CoA reductase 2 (AtCCR2) (EC 1.2.1.44),Cinnamoyl-CoA reductase 1 (AtCCR1) (EC 1.2.1.44) (Protein IRREGULAR XYLEM 4),Cinnamoyl coa reductase,Cinnamoyl coa reductase 1 cinnamoyl-CoA reductase activity [GO:0016621]; coenzyme binding [GO:0050662]; circadian rhythm [GO:0007623]; defense response [GO:0006952]; negative regulation of circadian rhythm [GO:0042754]; phenylpropanoid biosynthetic process [GO:0009699]; response to cold [GO:0009409],cytosol [GO:0005829]; cinnamoyl-CoA reductase activity [GO:0016621]; coenzyme binding [GO:0050662]; circadian rhythm [GO:0007623]; lignin biosynthetic process [GO:0009809]; response to cold [GO:0009409],catalytic activity [GO:0003824]; coenzyme binding [GO:0050662] TISSUE SPECIFICITY: Expressed at low levels in leaves, stems and flowers. {ECO:0000269|PubMed:11430991}.,TISSUE SPECIFICITY: Expressed in leaves, stems and flowers. locus:2025832;,locus:2200427; AT1G80820,AT1G15950 Polysaccharide biosynthesis protein NA NA NA NA NA NA NA ENOG411EE7C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Patatin-like phospholipase NA NA NA NA NA NA NA ENOG411EE7A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA SAM dependent carboxyl methyltransferase NA NA NA NA NA NA NA ENOG411EE7G NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ubiquinol oxidase Ubiquinol oxidase (EC 1.10.3.11) A0A0P0VI77 A0A0P0VI77_ORYSJ Os02g0318100 OSNPB_020318100 ENOG411EE7F NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Thioredoxin Os03g0168500 protein A0A0P0VTI6 A0A0P0VTI6_ORYSJ Os03g0168500 OSNPB_030168500 ENOG411EE7M MGD3,MGDC Q9SI93,A0A1P8AYS3,A0A1P8AYN0 MGDG3_ARATH,A0A1P8AYS3_ARATH,A0A1P8AYN0_ARATH Monogalactosyldiacylglycerol synthase 3, chloroplastic (AtMGD3) (EC 2.4.1.46) (MGDG synthase type C),Monogalactosyldiacylglycerol synthase type C No visible or biochemically determinable mutant phenotype observed under nutrient-sufficient conditions.,Under Pi starved conditions reduced DGDG content is observed the proportion of phosphatidylethanolamine and phosphatidylcholine increased approximately two-fold in shoot and large differences in fatty acid compositions of galactolipids are seen in shoots and particularly roots. Under these conditions the fresh weight of shoots and roots was reduced. FUNCTION: Involved in the synthesis of the major structural component of photosynthetic membranes and in the chloroplast envelope biogenesis. Can use both prokaryotic (18:1/16:0) or eukaryotic (18:2/18:2) 1,2-diacylglycerol species, but operates with some preference for the eukaryotic one. {ECO:0000269|PubMed:11553816}. MISCELLANEOUS: Auxin activates expression during Pi starvation, whereas cytokinin represses it. MetaCyc:AT2G11810-MONOMER; 2.4.1.46; 2.4.1.46 52990,38494,42786 Monogalactosyldiacylglycerol synthase 3, chloroplastic (AtMGD3) (EC 2.4.1.46) (MGDG synthase type C),Monogalactosyldiacylglycerol synthase type C chloroplast outer membrane [GO:0009707]; 1,2-diacylglycerol 3-beta-galactosyltransferase activity [GO:0046509]; cellular response to phosphate starvation [GO:0016036]; fatty acid metabolic process [GO:0006631]; galactolipid metabolic process [GO:0019374]; glycolipid biosynthetic process [GO:0009247],transferase activity, transferring hexosyl groups [GO:0016758]; glycolipid biosynthetic process [GO:0009247] DEVELOPMENTAL STAGE: Mostly expressed in early stages of development. {ECO:0000269|PubMed:11553816}. TISSUE SPECIFICITY: Expressed mainly in roots. Detected in flowers, leaves, stems, siliques and pollen tubes. {ECO:0000269|PubMed:11553816, ECO:0000269|PubMed:14730084}. locus:2052662; AT2G11810 Monogalactosyldiacylglycerol (MGDG) synthase NA NA NA NA NA NA NA ENOG411EE7V NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os06g0694700 protein Q5Z8I2 Q5Z8I2_ORYSJ Os06g0694700 OsJ_22480 OSNPB_060694700 P0550B04.32 P0622F03.7 ENOG411EE7U T9L24.46,Dr4 Q9FX28,Q39091 Q9FX28_ARATH,Q39091_ARATH Kunitz family trypsin and protease inhibitor protein (Tumor-related protein, putative),Dr4 protein (Dr4(Protease inhibitor)) (Drought-repressed 4) (Putative protease inhibitor Dr4) 24309,23113 Kunitz family trypsin and protease inhibitor protein (Tumor-related protein, putative),Dr4 protein (Dr4(Protease inhibitor)) (Drought-repressed 4) (Putative protease inhibitor Dr4) endopeptidase inhibitor activity [GO:0004866]; peptidase activity [GO:0008233],endopeptidase inhibitor activity [GO:0004866]; peptidase activity [GO:0008233]; peptidase inhibitor activity [GO:0030414]; response to water deprivation [GO:0009414] locus:505006220;,locus:2206905; AT1G73325,AT1G73330 Trypsin and protease inhibitor NA NA NA NA NA NA NA ENOG411EE7T ADS1 O65797,A0A1P8AU64 ADS1_ARATH,A0A1P8AU64_ARATH Delta-9 acyl-lipid desaturase 1 (EC 1.14.19.-),Delta 9 desaturase 1 FUNCTION: Involved in delta-9 desaturation of fatty acids. {ECO:0000269|PubMed:15240892, ECO:0000269|PubMed:17156034, ECO:0000269|PubMed:9559566}. MISCELLANEOUS: Substrate specificity shifts from delta-9 to delta-7 desaturation when the protein is retargeted to the chloroplast. PATHWAY: Lipid metabolism; polyunsaturated fatty acid biosynthesis. ARA:AT1G06080-MONOMER; R-ATH-75105; 1.14.19.- 36107,27066 Delta-9 acyl-lipid desaturase 1 (EC 1.14.19.-),Delta 9 desaturase 1 endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; oxidoreductase activity [GO:0016491]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; unsaturated fatty acid biosynthetic process [GO:0006636]; very long-chain fatty acid biosynthetic process [GO:0042761],integral component of membrane [GO:0016021]; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [GO:0016717]; fatty acid biosynthetic process [GO:0006633] TISSUE SPECIFICITY: Strongly expressed in inflorescence meristems, leaves, and flowers, and weakly in roots and seedpods. {ECO:0000269|PubMed:9559566}. locus:2198786; AT1G06080 delta 9 desaturase 1 NA NA NA NA NA NA NA ENOG411EE7Z T6H20.160,T6H20.170 Q9LTY3,Q9FHQ8,A0A1I9LSM2,Q9STF5,Q9ZUM8,Q9FLZ0,Q9LT62,Q6NMI5,Q9STF4,Q9SJ91,A0A1I9LLJ1,A0A1P8AY40,A0A1I9LRR5,F4IWJ4,A0A1I9LSM1,F4IWJ8 Q9LTY3_ARATH,Q9FHQ8_ARATH,A0A1I9LSM2_ARATH,Q9STF5_ARATH,Q9ZUM8_ARATH,Q9FLZ0_ARATH,Q9LT62_ARATH,Q6NMI5_ARATH,Q9STF4_ARATH,Q9SJ91_ARATH,A0A1I9LLJ1_ARATH,A0A1P8AY40_ARATH,A0A1I9LRR5_ARATH,F4IWJ4_ARATH,A0A1I9LSM1_ARATH,F4IWJ8_ARATH CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T6H20.160),Cysteine/Histidine-rich C1 domain family protein (Putative Ta11-like non-LTR retroelement protein),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein),At2g19660 (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T6H20.170),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g04680) 75605,75134,54119,78930,79118,62909,79579,75647,77884,75749,36351,78914,74560,68802,69948,50661 CHP-rich zinc finger protein-like (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein,Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T6H20.160),Cysteine/Histidine-rich C1 domain family protein (Putative Ta11-like non-LTR retroelement protein),Cysteine/Histidine-rich C1 domain family protein (Similarity to CHP-rich zinc finger protein),At2g19660 (Cysteine/Histidine-rich C1 domain family protein),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein T6H20.170),Cysteine/Histidine-rich C1 domain family protein (Uncharacterized protein At2g04680) intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular signal transduction [GO:0035556],plasmodesma [GO:0009506]; metal ion binding [GO:0046872],intracellular [GO:0005622]; intracellular signal transduction [GO:0035556],metal ion binding [GO:0046872] locus:2086651;,locus:2151759;,locus:2102747;,locus:2050444;,locus:4515103659;,locus:2091418;,locus:2050449;,locus:2102732;,locus:2049244;,locus:2091468;,locus:2091413; AT3G27473,AT5G37620,AT3G46810,AT2G19650,AT5G39471,AT3G27500,AT2G19660,AT3G46800,AT2G04680,AT3G27480,AT3G27510 cysteine histidine-rich C1 domain-containing protein NA NA NA NA NA NA NA ENOG411EJI6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Domain of unknown function (DUF588) NA NA NA NA NA NA NA ENOG411EJIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Ribonuclease T2 family NA NA NA NA NA NA NA ENOG411EJIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os04g0583000 protein A0A0P0WDY8 A0A0P0WDY8_ORYSJ Os04g0583000 OSNPB_040583000 ENOG411ECWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Anticodon binding domain NA NA NA NA NA NA NA ENOG411ECWH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA PRA1 family protein NA NA NA NA NA NA NA ENOG411E6BZ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6BY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA WRKY Os03g0657400 protein Q0DPW0 Q0DPW0_ORYSJ Os03g0657400 OSNPB_030657400 ENOG411E6BX NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0248800 protein Q0JP28 Q0JP28_ORYSJ Os01g0248800 Os01g0248800 OSNPB_010248800 ENOG411E6BW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Expressed protein (Os11g0197500 protein) (cDNA clone:J023039K16, full insert sequence) Q53LR6 Q53LR6_ORYSJ Os11g0197500 LOC_Os11g09150 Os11g0197500 OSNPB_110197500 ENOG411E6BV SEP1 Q9M7I9 STEP1_ARATH Stress enhanced protein 1, chloroplastic FUNCTION: May be involved in non-photochemical quenching, a process that maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage (By similarity). May play a photoprotective role in the thylakoid membrane in response to light stress (Probable). {ECO:0000250|UniProtKB:Q9XF91, ECO:0000305}. 14858 Stress enhanced protein 1, chloroplastic chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]; photosystem II [GO:0009523]; chlorophyll binding [GO:0016168]; substrate-specific transmembrane transporter activity [GO:0022891]; cellular response to high light intensity [GO:0071486]; cellular response to UV-A [GO:0071492]; photosynthesis [GO:0015979]; response to high light intensity [GO:0009644]; response to wounding [GO:0009611]; transmembrane transport [GO:0055085] locus:2124236; AT4G34190 stress enhanced protein 1 Os10g0395200 protein (Fragment) A0A0P0XTT1 A0A0P0XTT1_ORYSJ Os10g0395200 OSNPB_100395200 ENOG411E6BU NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein NA NA NA NA NA NA NA ENOG411E6BT Q8H130 Q8H130_ARATH Ubiquitin carboxyl-terminal hydrolase (Uncharacterized protein At1g65295) 12732 Ubiquitin carboxyl-terminal hydrolase (Uncharacterized protein At1g65295) hydrolase activity [GO:0016787] locus:505006203; AT1G65295 NA Expressed protein (Os11g0463700 protein) (cDNA clone:J013042B18, full insert sequence) Q2R4R8 Q2R4R8_ORYSJ Os11g0463700 LOC_Os11g27540 Os11g0463700 OsJ_33839 OSNPB_110463700 ENOG411E6BS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os03g0323900 protein (Protease inhibitor/seed storage/LTP family protein, expressed) Q10M44 Q10M44_ORYSJ Os03g0323900 LOC_Os03g20760 Os03g0323900 OSNPB_030323900 ENOG411E6BR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os12g0288801 protein A0A0P0Y9A7 A0A0P0Y9A7_ORYSJ Os12g0288801 OSNPB_120288801 ENOG411E6BQ Q6NMD5 Q6NMD5_ARATH At2g24395 (Chaperone protein dnaJ-like protein) 15056 At2g24395 (Chaperone protein dnaJ-like protein) heat shock protein binding [GO:0031072]; unfolded protein binding [GO:0051082] locus:504955942; AT2G24395 NA Os08g0520850 protein A0A0N7KQ58 A0A0N7KQ58_ORYSJ Os08g0520850 OSNPB_080520850 ENOG411E6BP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:DUF584 Os01g0727700 protein,Os01g0727600 protein (Fragment) Q5JM44,A0A0N7KDN8 Q5JM44_ORYSJ,A0A0N7KDN8_ORYSJ Os01g0727700 OSNPB_010727700 P0042A10.41 P0456A01.5,Os01g0727600 OSNPB_010727600 ENOG411E6BN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Replication factor-A C terminal domain NA NA NA NA NA NA NA ENOG411E6BM Q9C5E4 Q9C5E4_ARATH AT3G60410 protein (At3g60410) (Uncharacterized protein At3g60410) 35053 AT3G60410 protein (At3g60410) (Uncharacterized protein At3g60410) locus:2103306; AT3G60410 Protein of unknown function (DUF1639) NA NA NA NA NA NA NA ENOG411E6BJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VMA21-like domain Vacuolar ATPase assembly integral membrane protein VMA21 homolog Q0JA73 Q0JA73_ORYSJ Os04g0612900 Os04g0612900 OsJ_16133 OSNPB_040612900 FUNCTION: Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum. {ECO:0000256|HAMAP-Rule:MF_03058}. ENOG411E6BI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6BG MYH9.17 Q67XU1,A0A1P8BH76,A0A1P8BH61 Q67XU1_ARATH,A0A1P8BH76_ARATH,A0A1P8BH61_ARATH At5g09960 (Sorbin/SH3 domain protein) (Uncharacterized protein At5g09960),Sorbin/SH3 domain protein 12875,12674,9671 At5g09960 (Sorbin/SH3 domain protein) (Uncharacterized protein At5g09960),Sorbin/SH3 domain protein plasma membrane [GO:0005886] locus:2178203; AT5G09960 Cleavage site for pathogenic type III effector avirulence factor Avr NA NA NA NA NA NA NA ENOG411E6BF Q9FH22 Q9FH22_ARATH DUF581 family protein, putative (DUF581) (Gb|AAF17687.1) 17170 DUF581 family protein, putative (DUF581) (Gb|AAF17687.1) locus:2155174; AT5G49120 Whole genome shotgun sequence of line PN40024 scaffold_77.assembly12x (Fragment) Os11g0659200 protein,Os02g0592800 protein (Os02g0592833 protein) (cDNA clone:002-132-D05, full insert sequence) B9G8P9,Q69L67 B9G8P9_ORYSJ,Q69L67_ORYSJ Os11g0659200 Os11g0659200 OsJ_34720 OSNPB_110659200,Os02g0592833 Os02g0592800 OsJ_07343 OSJNBa0016G10.17 OSNPB_020592833 ENOG411E6BE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA zinc finger protein ZAT5-like NA NA NA NA NA NA NA ENOG411E6BD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GLutaRedoXin Monothiol glutaredoxin-S3 Q0JP62 GRXS3_ORYSJ GRXS3 Os01g0241400 LOC_Os01g13950 OSJNBa0010K01.30 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411E6BC ACP1,ACP3,ACP5,ACP2 P11829,P25702,O04652,P25701,F4HWZ6 ACP1_ARATH,ACP3_ARATH,ACP5_ARATH,ACP2_ARATH,F4HWZ6_ARATH Acyl carrier protein 1, chloroplastic (ACP-1),Acyl carrier protein 3, chloroplastic (ACP-3),Acyl carrier protein 5, chloroplastic,Acyl carrier protein 2, chloroplastic (ACP-2),Acyl carrier protein 3 DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:19218086}. FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000269|PubMed:11553750}.,FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis.,FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. {ECO:0000250}. MISCELLANEOUS: Plants over-expressing ACP1 show altered composition of fatty acids, with significant decrease in levels of hexadecatrienoic acid (16:3) and increase in linolenate (18:3) content. {ECO:0000305|PubMed:11553750}. 15055,14650,15302,14528,11507 Acyl carrier protein 1, chloroplastic (ACP-1),Acyl carrier protein 3, chloroplastic (ACP-3),Acyl carrier protein 5, chloroplastic,Acyl carrier protein 2, chloroplastic (ACP-2),Acyl carrier protein 3 chloroplast [GO:0009507]; cytosol [GO:0005829]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; fatty acid biosynthetic process [GO:0006633]; lipid A biosynthetic process [GO:0009245],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; lipid A biosynthetic process [GO:0009245],chloroplast [GO:0009507]; cytosol [GO:0005829]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; lipid A biosynthetic process [GO:0009245],chloroplast [GO:0009507]; cytosol [GO:0005829]; ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036]; acyl binding [GO:0000035]; phosphopantetheine binding [GO:0031177]; protein domain specific binding [GO:0019904]; lipid A biosynthetic process [GO:0009245] locus:2114820;,locus:2199517;,locus:2181216;,locus:2199461; AT3G05020,AT1G54630,AT5G27200,AT1G54580 Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) NA NA NA NA NA NA NA ENOG411E6BB Q9C7T2 Q9C7T2_ARATH At1g72230/T9N14_17 (Blue copper protein, putative) (Blue copper protein, putative; 52232-53038) (Cupredoxin superfamily protein) 18371 At1g72230/T9N14_17 (Blue copper protein, putative) (Blue copper protein, putative; 52232-53038) (Cupredoxin superfamily protein) anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055] locus:2206986; AT1G72230 Blue copper Os06g0218600 protein (Putative blue copper protein) (cDNA clone:001-019-E04, full insert sequence) (cDNA clone:006-309-G10, full insert sequence) (cDNA clone:J023135E05, full insert sequence) Q69QA7 Q69QA7_ORYSJ Os06g0218600 Os06g0218600 OsJ_20609 OSNPB_060218600 P0436F11.4 P0644A02.28 ENOG411E6BA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: Retrotransposon protein Os04g0206401 protein,Os06g0629687 protein A0A0P0W7C6,A0A0N7KMG1 A0A0P0W7C6_ORYSJ,A0A0N7KMG1_ORYSJ Os04g0206401 OSNPB_040206401,Os06g0629687 OSNPB_060629687 ENOG411EAGB NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411E6B8 rps19 P56808 RR19_ARATH 30S ribosomal protein S19, chloroplastic FUNCTION: Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. {ECO:0000250}. 10608 30S ribosomal protein S19, chloroplastic chloroplast [GO:0009507]; cytosolic small ribosomal subunit [GO:0022627]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] ATCG00820 ribosomal protein S19 30S ribosomal protein S19, chloroplastic P12153 RR19_ORYSJ rps19-A Nip222; rps19-B FUNCTION: Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. {ECO:0000250}. ENOG411E6B7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AP2 NA NA NA NA NA NA NA ENOG411E6B5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AAI Os03g0718800 protein (Protease inhibitor/seed storage/LTP family protein, expressed) (Putative protease inhibitor/seed storage/LTP family protein) Q6ASW6 Q6ASW6_ORYSJ B1377B10.1 LOC_Os03g50960 Os03g0718800 OsJ_12367 OSNPB_030718800 ENOG411E6B4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os08g0414300 protein (cDNA clone:J013159I12, full insert sequence) Q6Z552 Q6Z552_ORYSJ Os08g0414300 OsJ_27308 OSJNBa0007M04.37 OSNPB_080414300 ENOG411E6B3 Q9SZ50 Q9SZ50_ARATH At4g31830 (Transmembrane protein) (Uncharacterized protein AT4g31830) 10597 At4g31830 (Transmembrane protein) (Uncharacterized protein AT4g31830) integral component of membrane [GO:0016021] locus:2116762; AT4G31830 NA Os09g0127700 protein (cDNA clone:002-134-D11, full insert sequence) Q6K3G5 Q6K3G5_ORYSJ Os09g0127700 Os09g0127700 OJ1352_A10.30 OsJ_28434 OSNPB_090127700 ENOG411E6B1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Gibberellin regulated protein Gibberellin-stimulated protein (Os06g0266800 protein),Os06g0266800 protein (Putative gibberellin induced protein 3) Q53AN3,Q5Z6N0 Q53AN3_ORYSJ,Q5Z6N0_ORYSJ Gsr1 Os06g0266800 OSNPB_060266800,Os06g0266800 Os06g0266800 OJ1001_B06.38 OSNPB_060266800 P0528B02.10 ENOG411E6B0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os09g0309500 protein Q0J2R8 Q0J2R8_ORYSJ Os09g0309500 OSNPB_090309500 ENOG411E5N4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA dCTP pyrophosphatase OSJNBb0070J16.14 protein (OSJNBb0072M01.10 protein) (Os04g0515400 protein) Q7X6K1 Q7X6K1_ORYSJ Os04g0515400 OSJNBb0070J16.14 OSJNBb0072M01.10 OSNPB_040515400 ENOG411E5N7 MDC12.27,GHS1 Q9FMJ3,Q500W1,Q9LI88,A0A1I9LRJ3 Q9FMJ3_ARATH,Q500W1_ARATH,Q9LI88_ARATH,A0A1I9LRJ3_ARATH At5g63300 (Ribosomal protein S21 family protein),Ribosomal protein S21 family protein Pale green; Small leaves; Sensitive to glucose-J. Yamaguchi-2004 24788,21175,20911,24845 At5g63300 (Ribosomal protein S21 family protein),Ribosomal protein S21 family protein ribosomal subunit [GO:0044391]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412],chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; ribosomal subunit [GO:0044391]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] locus:2161912;,locus:2095143; AT5G63300,AT3G27160 Ribosomal protein S21 Os02g0189000 protein (Ribosomal protein S21-like protein) (cDNA clone:J013095G03, full insert sequence) Q6YUV4 Q6YUV4_ORYSJ Os02g0189000 Os02g0189000 OJ1145_F01.24 OsJ_05685 OSJNBb0031B09.3 OSNPB_020189000 ENOG411E5N3 UCC1 O82081,A0A1P8B2P6 UCC1_ARATH,A0A1P8B2P6_ARATH Uclacyanin 1 26451,29990 Uclacyanin 1 anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; electron carrier activity [GO:0009055]; metal ion binding [GO:0046872],integral component of membrane [GO:0016021]; electron carrier activity [GO:0009055] locus:2062525; AT2G32300 Early nodulin-like protein NA NA NA NA NA NA NA ENOG411E3J7 ND3,51141.TRNA-ILE-1 P92533,Q3EC47 NU3M_ARATH,Q3EC47_ARATH NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH dehydrogenase subunit 3),NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.-) (EC 1.6.5.3) FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). {ECO:0000250}.,FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000256|SAAS:SAAS01013641}. MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07751) is not demonstrated. It is also probably not RNA edited and therefore differs in all the positions known to be edited. ARA:ATMG00990-MONOMER;,ARA:AT2G07751-MONOMER; 1.6.5.3,1.6.5.-; 1.6.5.3 13935,13529 NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH dehydrogenase subunit 3),NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.-) (EC 1.6.5.3) integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; respiratory chain [GO:0070469]; NADH dehydrogenase (ubiquinone) activity [GO:0008137],integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; oxidation-reduction process [GO:0055114] locus:504955923; ATMG00990,AT2G07751 Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) Os12g0423142 protein (Fragment),NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) A0A0P0Y9J9,Q8HCQ0 A0A0P0Y9J9_ORYSJ,Q8HCQ0_ORYSJ Os12g0423142 OSNPB_120423142,nad3 ENOG411E5NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from euNOG: expressed protein Os08g0420700 protein Q8H341 Q8H341_ORYSJ Os08g0420700 OJ1188_F05.21 OsJ_27345 OSJNBa0077M12.102 OSNPB_080420700 ENOG411E5NM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Inherit from KOG: GLutaRedoXin Monothiol glutaredoxin-S5 Q5QLR2 GRXS5_ORYSJ GRXS5 Os01g0667900 LOC_Os01g47760 OSJNBb0063G05.32 P0014E08.2 FUNCTION: May only reduce GSH-thiol disulfides, but not protein disulfides. {ECO:0000305}. ENOG411E5NH VQ31 Q9FNP0 VQ31_ARATH VQ motif-containing protein 31 (AtVQ31) (MPK3/6-targeted VQ-motif-containing protein 6) FUNCTION: May modulate WRKY transcription factor activities. {ECO:0000250|UniProtKB:Q9M9F0}. 18899 VQ motif-containing protein 31 (AtVQ31) (MPK3/6-targeted VQ-motif-containing protein 6) nucleus [GO:0005634] locus:2159567; AT5G08480 VQ motif NA NA NA NA NA NA NA ENOG411E5NT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Protein of unknown function (DUF1635) Os04g0137450 protein A0A0P0W748 A0A0P0W748_ORYSJ Os04g0137450 OSNPB_040137450 ENOG411E3J4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Histone-like transcription factor (CBF/NF-Y) and archaeal histone Os01g0935100 protein A0A0P0VCF9 A0A0P0VCF9_ORYSJ Os01g0935100 OSNPB_010935100 ENOG411E3J5 Q9C9G5 Q9C9G5_ARATH Adenine nucleotide alpha hydrolases-like superfamily protein (At1g68300) (Uncharacterized protein At1g68300) (Uncharacterized protein T22E19.7) 17332 Adenine nucleotide alpha hydrolases-like superfamily protein (At1g68300) (Uncharacterized protein At1g68300) (Uncharacterized protein T22E19.7) hydrolase activity [GO:0016787]; response to stress [GO:0006950] locus:2199282; AT1G68300 Universal stress protein Os01g0511100 protein (Putative ER6 protein) (cDNA clone:J023069J05, full insert sequence) Q94E74 Q94E74_ORYSJ Os01g0511100 OsJ_01972 OSJNBa0054L14.5 OSNPB_010511100 P0520B06.31 ENOG411E1G4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Retrotransposon protein NA NA NA NA NA NA NA ENOG411DZ59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Phosphoesterase family Os11g0593000 protein A0A0P0Y3X8 A0A0P0Y3X8_ORYSJ Os11g0593000 OSNPB_110593000 ENOG411DZ58 PME17 O22149 PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 [Includes: Pectinesterase inhibitor 17 (Pectin methylesterase inhibitor 17); Pectinesterase 17 (PE 17) (EC 3.1.1.11) (Pectin methylesterase 17) (AtPME17)] FUNCTION: Acts in the modification of cell walls via demethylesterification of cell wall pectin. {ECO:0000250}. MISCELLANEOUS: The PMEI region may act as an autoinhibitory domain and prevent untimely PME activity during transport. PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5. ARA:AT2G45220-MONOMER; 3.1.1.11 55977 Probable pectinesterase/pectinesterase inhibitor 17 [Includes: Pectinesterase inhibitor 17 (Pectin methylesterase inhibitor 17); Pectinesterase 17 (PE 17) (EC 3.1.1.11) (Pectin methylesterase 17) (AtPME17)] cell periphery [GO:0071944]; cell wall [GO:0005618]; extracellular region [GO:0005576]; membrane [GO:0016020]; aspartyl esterase activity [GO:0045330]; pectinesterase activity [GO:0030599]; pectinesterase inhibitor activity [GO:0046910]; cell wall modification [GO:0042545]; defense response to Gram-negative bacterium [GO:0050829]; pectin catabolic process [GO:0045490]; response to bacterium [GO:0009617]; response to fungus [GO:0009620] DEVELOPMENTAL STAGE: Expressed during late developmental phases of siliques. {ECO:0000269|PubMed:16622707}. TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16622707, ECO:0000269|PubMed:9767082}. locus:2050941; AT2G45220 pectinesterase NA NA NA NA NA NA NA ENOG411DZ55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA LRR receptor-like serine threonine-protein kinase Os01g0170300 protein (Putative receptor-like protein kinase INRPK1) (cDNA, clone: J065161B03, full insert sequence),Os05g0169600 protein (Fragment) Q5VQM7,Q0DKE5 Q5VQM7_ORYSJ,Q0DKE5_ORYSJ Os01g0170300 OsJ_00540 OSNPB_010170300 P0583G08.7,Os05g0169600 Os05g0169600 OSNPB_050169600 ENOG411DZ54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Cyclin C-terminal domain Cyclin-B1-3 (CYCB1;1) (G2/mitotic-specific cyclin-B1-3) (CycB1;3),Os02g0627800 protein Q0JNK6,A0A0P0VLX4 CCB13_ORYSJ,A0A0P0VLX4_ORYSJ CYCB1-3 CycB1-1 Os01g0281200 LOC_Os01g17402 B1085F09.20,Os02g0627800 OSNPB_020627800 ENOG411DZ57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA bZIP transcription factor domain containing protein expressed Os12g0194600 protein A0A0P0Y7R8 A0A0P0Y7R8_ORYSJ Os12g0194600 OSNPB_120194600 ENOG411DZ56 Q8GXN7 Q8GXN7_ARATH Duplicated homeodomain-like superfamily protein (MYB transcription factor) (Putative MYB family transcription factor) 33251 Duplicated homeodomain-like superfamily protein (MYB transcription factor) (Putative MYB family transcription factor) nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351] locus:2042872; AT2G38090 Transcription factor NA NA NA NA NA NA NA ENOG411DZ51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Leucoanthocyanidin reductase Leucanthocyanidin reductase (EC 1.17.1.3) (Leucoanthocyanidin reductase, putative) (Os03g0259400 protein) Q3KN74 Q3KN74_ORYSJ lar LOC_Os03g15360 Os03g0259400 OsJ_10204 OSNPB_030259400 ENOG411DZ50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA powdery mildew resistance protein PM3b Os01g0359800 protein,Os10g0131100 protein,Os10g0130800 protein,Os01g0359600 protein,Os01g0360175 protein,Os10g0130600 protein Q0JMU6,B9G7D8,Q0IZ52,A2ZT20,A0A0P0V2E8,A0A0P0XRB6 Q0JMU6_ORYSJ,B9G7D8_ORYSJ,Q0IZ52_ORYSJ,A2ZT20_ORYSJ,A0A0P0V2E8_ORYSJ,A0A0P0XRB6_ORYSJ Os01g0359800 Os01g0359800 OSNPB_010359800,Os10g0131100 OsJ_30621 OSNPB_100131100,Os10g0130800 OSNPB_100130800,Os01g0359600 OsJ_01741 OSNPB_010359600,Os01g0360175 OSNPB_010360175,Os10g0130600 OSNPB_100130600 ENOG411DZ53 Q8H107,Q9FLQ4 ODO2B_ARATH,ODO2A_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex component E2-2) (OGDC-E2-2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2) (E2K-2),Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex component E2-1) (OGDC-E2-1) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1) (E2K-1) FUNCTION: The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). {ECO:0000250}. PATHWAY: Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 6/6. ARA:AT4G26910-MONOMER;,ARA:AT5G55070-MONOMER; R-ATH-71064;R-ATH-71403; 2.3.1.61 50059,50134 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex component E2-2) (OGDC-E2-2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2) (E2K-2),Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex component E2-1) (OGDC-E2-1) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1) (E2K-1) membrane [GO:0016020]; mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252]; dihydrolipoyllysine-residue succinyltransferase activity [GO:0004149]; zinc ion binding [GO:0008270]; L-lysine catabolic process to acetyl-CoA via saccharopine [GO:0033512]; tricarboxylic acid cycle [GO:0006099],cytosolic ribosome [GO:0022626]; mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252]; dihydrolipoyllysine-residue succinyltransferase activity [GO:0004149]; zinc ion binding [GO:0008270]; L-lysine catabolic process to acetyl-CoA via saccharopine [GO:0033512]; response to oxidative stress [GO:0006979]; tricarboxylic acid cycle [GO:0006099] locus:2116432;,locus:2161670; AT4G26910,AT5G55070 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OSJNBa0072K14.5 protein (Os04g0394200 protein) (cDNA clone:J023045A15, full insert sequence),Os02g0514700 protein (Fragment) Q7XVM2,A0A0P0VJK1 Q7XVM2_ORYSJ,A0A0P0VJK1_ORYSJ Os04g0394200 Os04g0394200 OsJ_14615 OSJNBa0072K14.5 OSNPB_040394200,Os02g0514700 OSNPB_020514700 ENOG411DZ52 TRB1 Q8VWK4 TRB1_ARATH Telomere repeat-binding factor 1 (AtTRB1) (MYB transcription factor) FUNCTION: Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. 33017 Telomere repeat-binding factor 1 (AtTRB1) (MYB transcription factor) chromatin [GO:0000785]; nuclear chromosome, telomeric region [GO:0000784]; nucleolus [GO:0005730]; nucleosome [GO:0000786]; nucleus [GO:0005634]; activating transcription factor binding [GO:0033613]; double-stranded telomeric DNA binding [GO:0003691]; promoter-specific chromatin binding [GO:1990841]; protein homodimerization activity [GO:0042803]; repressing transcription factor binding [GO:0070491]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; nucleosome assembly [GO:0006334]; regulation of transcription from RNA polymerase II promoter [GO:0006357]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to cadmium ion [GO:0046686]; response to ethylene [GO:0009723]; response to gibberellin [GO:0009739]; response to jasmonic acid [GO:0009753]; response to salicylic acid [GO:0009751]; response to salt stress [GO:0009651]; telomeric loop formation [GO:0031627]; transcription, DNA-templated [GO:0006351] locus:2031095; AT1G49950 single myb histone Myb-like DNA binding domain containing protein (Myb-like DNA-binding domain containing protein, expressed) (Os12g0613300 protein) (cDNA clone:J023108E10, full insert sequence),Os01g0589300 protein,Os01g0589300 protein (Fragment) Q2QM89,Q0JLM2,A0A0P0V4P6 Q2QM89_ORYSJ,Q0JLM2_ORYSJ,A0A0P0V4P6_ORYSJ Os12g0613300 LOC_Os12g41920 Os12g0613300 OSNPB_120613300,Os01g0589300 Os01g0589300 OsJ_02415 OSNPB_010589300,Os01g0589300 OSNPB_010589300 ENOG411DZ5Y NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Eukaryotic aspartyl protease NA NA NA NA NA NA NA ENOG411DZ5X RANGAP1,RANGAP2 Q9LE82,Q9M651 RAGP1_ARATH,RAGP2_ARATH RAN GTPase-activating protein 1 (AtRanGAP1) (RanGAP1),RAN GTPase-activating protein 2 (AtRanGAP2) (RanGAP2) FUNCTION: GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Plays a role in spatial signaling during cell division. {ECO:0000269|PubMed:12061901, ECO:0000269|PubMed:19011093}.,FUNCTION: GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. {ECO:0000269|PubMed:12061901}. 58827,59652 RAN GTPase-activating protein 1 (AtRanGAP1) (RanGAP1),RAN GTPase-activating protein 2 (AtRanGAP2) (RanGAP2) cell division site [GO:0032153]; cell plate [GO:0009504]; chloroplast [GO:0009507]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; spindle [GO:0005819]; GTPase activator activity [GO:0005096]; cytokinesis by cell plate formation [GO:0000911]; protein import into nucleus [GO:0006606],chloroplast [GO:0009507]; endoplasmic reticulum [GO:0005783]; nuclear envelope [GO:0005635]; nuclear membrane [GO:0031965]; phragmoplast [GO:0009524]; spindle [GO:0005819]; vacuolar membrane [GO:0005774]; GTPase activator activity [GO:0005096]; nucleocytoplasmic transport [GO:0006913]; response to salt stress [GO:0009651] locus:2099207;,locus:2150285; AT3G63130,AT5G19320 RAN GTPase-activating protein Os05g0543200 protein (cDNA, clone: J090026K18, full insert sequence),Os05g0409200 protein (Fragment) Q65XN1,A0A0P0WMG5 Q65XN1_ORYSJ,A0A0P0WMG5_ORYSJ Os05g0543200 OJ1288_A07.8 OsJ_19409 OSNPB_050543200,Os05g0409200 OSNPB_050409200 ENOG411DZ5Z ASG1 Q9LF60 Q9LF60_ARATH At5g17640 (Nuclear factor 1 A-type protein (DUF1005)) (Uncharacterized protein K10A8_120) 47581 At5g17640 (Nuclear factor 1 A-type protein (DUF1005)) (Uncharacterized protein K10A8_120) response to abscisic acid [GO:0009737]; response to salt stress [GO:0009651] locus:2151391; AT5G17640 Protein of unknown function (DUF1005) Os08g0163500 protein (cDNA clone:001-022-F11, full insert sequence) Q84S47 Q84S47_ORYSJ OJ9990_A01.119 Os08g0163500 OJ1449_C01.2 OsJ_26152 OSNPB_080163500 ENOG411DZ5U NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Outer membrane protein OMP85 family Os11g0106200 protein (cDNA clone:J013119I16, full insert sequence),Os11g0106200 protein (cDNA clone:J013071M22, full insert sequence),Os12g0105700 protein (Outer membrane protein, OMP85 family protein, expressed) (cDNA clone:J013119K16, full insert sequence),Os11g0106200 protein (Fragment) B7EKD0,B7ECH1,Q2QYV1,A0A0P0XYC9 B7EKD0_ORYSJ,B7ECH1_ORYSJ,Q2QYV1_ORYSJ,A0A0P0XYC9_ORYSJ Os11g0106200 OSNPB_110106200,Os12g0105700 LOC_Os12g01500 Os12g0105700 OSNPB_120105700 ENOG411DZ5T MPI7.8 Q9FKN5 Q9FKN5_ARATH Cardiomyopathy-associated protein (Gb|AAC35233.1|) 149600 Cardiomyopathy-associated protein (Gb|AAC35233.1|) integral component of membrane [GO:0016021] locus:2170313; AT5G17910 NA Os07g0472300 protein,Os01g0812050 protein Q7F0A1,A0A0P0V9H2 Q7F0A1_ORYSJ,A0A0P0V9H2_ORYSJ P0675B10.122 Os07g0472300 OSNPB_070472300,Os01g0812050 OSNPB_010812050 ENOG411DZ5W PER46,PER18 O81772,Q9SK52,A0A1P8B2E5 PER46_ARATH,PER18_ARATH,A0A1P8B2E5_ARATH Peroxidase 46 (Atperox P46) (EC 1.11.1.7) (ATP48),Peroxidase 18 (Atperox P18) (EC 1.11.1.7),Peroxidase superfamily protein FUNCTION: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue. MISCELLANEOUS: There are 73 peroxidase genes in A.thaliana. ARA:AT4G31760-MONOMER;,ARA:AT2G24800-MONOMER; Phenylalanine metabolism (00360),Phenylpropanoid biosynthesis (00940),Biosynthesis of secondary metabolites (01110),Metabolic pathways (01100) 1.11.1.7 35244,35641,26225 Peroxidase 46 (Atperox P46) (EC 1.11.1.7) (ATP48),Peroxidase 18 (Atperox P18) (EC 1.11.1.7),Peroxidase superfamily protein extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]; hydrogen peroxide catabolic process [GO:0042744]; plant-type cell wall organization [GO:0009664]; response to oxidative stress [GO:0006979],heme binding [GO:0020037]; peroxidase activity [GO:0004601]; response to oxidative stress [GO:0006979] locus:2047380; AT4G31760,AT2G24800 peroxidase Peroxidase (EC 1.11.1.7) Q7XUL1 Q7XUL1_ORYSJ Os04g0498700 OsJ_04177 OSJNBa0067K08.24 OSNPB_040498700 ENOG411DZ5V G6PD4 Q93ZW0,F4I0Y8 G6PD4_ARATH,F4I0Y8_ARATH Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic (G6PD4) (G6PDH4) (EC 1.1.1.49),Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. The main function of this enzyme is to provide reducing power (NADPH) and pentose phosphates for fatty acid and nucleic acid synthesis which are involved in membrane synthesis and cell division.,FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. {ECO:0000256|RuleBase:RU362120}. MISCELLANEOUS: There are 6 glucose-6-phosphate 1-dehydrogenase genes in A.thaliana. PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.,PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3. {ECO:0000256|RuleBase:RU362120}. ARA:AT1G09420-MONOMER; 1.1.1.49; 1.1.1.49 70202,71468 Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic (G6PD4) (G6PDH4) (EC 1.1.1.49),Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) chloroplast [GO:0009507]; glucose-6-phosphate dehydrogenase activity [GO:0004345]; NADP binding [GO:0050661]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt [GO:0006098],chloroplast [GO:0009507]; NADP binding [GO:0050661]; oxidoreductase activity [GO:0016491]; glucose metabolic process [GO:0006006]; pentose-phosphate shunt [GO:0006098] locus:2012305; AT1G09420 glucose-6-phosphate 1-dehydrogenase Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Q10M94 Q10M94_ORYSJ Os03g0318500 LOC_Os03g20300 Os03g0318500 OsJ_10634 OSNPB_030318500 FUNCTION: Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. {ECO:0000256|RuleBase:RU362120}. ENOG411DZ5Q GSH1 P46309,F4JMS5 GSH1_ARATH,F4JMS5_ARATH Glutamate--cysteine ligase, chloroplastic (EC 6.3.2.2) (Gamma-ECS) (GCS) (Gamma-glutamylcysteine synthetase) (Protein ROOT MERISTEMLESS 1) (AtGCL) (Protein cadmium-sensitive 2) (Protein phytoalexin-deficient 2),Glutamate-cysteine ligase DISRUPTION PHENOTYPE: Plants are characterized by a recessive embryo-lethal phenotype. {ECO:0000269|PubMed:16531482}. The mutant exhibits a significant flg22-induced reduction in bacterial growth indicating that the gene is most probably not required for flg22-induced bacterial resistance. Null: Embryo and seedling defective; Knockdown: Short roots; Abnormal shoot meristem; Sensitive to cadmium-R. Sung-1998 FUNCTION: Seems to play an important role in controlling the expression of resistance responses like the regulation of salicylic acid (SA) and phytoalexin (camalexin) production. Involved in resistance to fungal and bacterial pathogens. Required for the regulation of cell proliferation in root apical meristems through the GSH-dependent developmental pathway. Also participates in the detoxification process, the antioxidant response and is essential for embryo development and proper seed maturation. {ECO:0000269|PubMed:10634910, ECO:0000269|PubMed:11402187, ECO:0000269|PubMed:11722772, ECO:0000269|PubMed:12848825, ECO:0000269|PubMed:14749480, ECO:0000269|PubMed:15308753, ECO:0000269|PubMed:16531482, ECO:0000269|PubMed:17144898, ECO:0000269|PubMed:7724670, ECO:0000269|PubMed:7770518, ECO:0000269|PubMed:8090752, ECO:0000269|PubMed:8725243}. PATHWAY: Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 1/2. ARA:AT4G23100-MONOMER;MetaCyc:AT4G23100-MONOMER; 6.3.2.2; 6.3.2.2 58562,53481 Glutamate--cysteine ligase, chloroplastic (EC 6.3.2.2) (Gamma-ECS) (GCS) (Gamma-glutamylcysteine synthetase) (Protein ROOT MERISTEMLESS 1) (AtGCL) (Protein cadmium-sensitive 2) (Protein phytoalexin-deficient 2),Glutamate-cysteine ligase chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; plastid [GO:0009536]; ATP binding [GO:0005524]; glutamate-cysteine ligase activity [GO:0004357]; defense response by callose deposition in cell wall [GO:0052544]; defense response to bacterium [GO:0042742]; defense response to bacterium, incompatible interaction [GO:0009816]; defense response to fungus [GO:0050832]; defense response to insect [GO:0002213]; flower development [GO:0009908]; glucosinolate biosynthetic process [GO:0019761]; glutathione biosynthetic process [GO:0006750]; indole phytoalexin biosynthetic process [GO:0009700]; response to cadmium ion [GO:0046686]; response to heat [GO:0009408]; response to jasmonic acid [GO:0009753]; response to ozone [GO:0010193],glutamate-cysteine ligase activity [GO:0004357]; glutathione biosynthetic process [GO:0006750] TISSUE SPECIFICITY: Abundant in leaves and roots. Expressed to a high level in leaf trichomes of mature plant. {ECO:0000269|PubMed:10995473}. locus:2127173; AT4G23100 glutamate--cysteine ligase Glutamate--cysteine ligase A, chloroplastic (EC 6.3.2.2) (Gamma-ECS A) (GCS A) (Gamma-glutamylcysteine synthetase A),Glutamate--cysteine ligase B, chloroplastic (EC 6.3.2.2) (Gamma-ECS B) (GCS B) (Gamma-glutamylcysteine synthetase B),Os07g0462000 protein (Fragment),Os05g0129000 protein (Fragment) Q688Q9,Q6Z3A3,A0A0P0X5S5,A0A0P0WHK0 GSH1A_ORYSJ,GSH1B_ORYSJ,A0A0P0X5S5_ORYSJ,A0A0P0WHK0_ORYSJ GSH1-1 Os05g0129000 LOC_Os05g03820 OSJNBa0056I11.11,GSH1-2 Os07g0462000 LOC_Os07g27790 P0038F09.39,Os07g0462000 OSNPB_070462000,Os05g0129000 OSNPB_050129000 ENOG411DZ5P NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UPF0326 protein EREBP-4 like protein (Os06g0560400 protein) (cDNA clone:002-138-D09, full insert sequence) (cDNA clone:J033132P08, full insert sequence) Q5Z918 Q5Z918_ORYSJ Os06g0560400 OsJ_21694 OSNPB_060560400 P0528E12.21 ENOG411DZ5S NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA vesicle-associated Os10g0549100 protein (Putative membrane protein) (Vesicle-associated membrane family protein, putative, expressed) (cDNA clone:J023085B19, full insert sequence),Os02g0652550 protein Q94LV0,A0A0P0VMG3 Q94LV0_ORYSJ,A0A0P0VMG3_ORYSJ OSJNBa0082M15.17 LOC_Os10g40140 Os10g0549100 OsJ_32370 OSNPB_100549100,Os02g0652550 OSNPB_020652550 ENOG411DZ5R NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA DUF1785 Protein argonaute 14 (OsAGO14),Os03g0252750 protein,Os02g0616300 protein (Fragment) Q6Z4F1,A0A0P0VVI1,A0A0P0VLZ4 AGO14_ORYSJ,A0A0P0VVI1_ORYSJ,A0A0P0VLZ4_ORYSJ AGO14 Os07g0188000 LOC_Os07g09020 OSJNBb0002L09.2 OSJNBb0084L07.14,Os03g0252750 OSNPB_030252750,Os02g0616300 OSNPB_020616300 FUNCTION: Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). {ECO:0000250}. ENOG411DZ5M NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Pfam:CXC Os05g0509400 protein (cDNA clone:002-137-H05, full insert sequence) Q6L4W5 Q6L4W5_ORYSJ Os05g0509400 OSJNBb0108E17.15 OSNPB_050509400 ENOG411DZ5N B160 Q8H1S7 Q8H1S7_ARATH Protein B160 (Uncharacterized protein At4g21430) R-ATH-3214842;R-ATH-983231; 105143 Protein B160 (Uncharacterized protein At4g21430) chromatin [GO:0000785]; nucleus [GO:0005634]; chromatin DNA binding [GO:0031490]; histone demethylase activity (H3-K9 specific) [GO:0032454]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; histone H3-K9 demethylation [GO:0033169]; regulation of transcription, DNA-templated [GO:0006355] locus:2141221; AT4G21430 Protein binding transcription factor zinc ion binding NA NA NA NA NA NA NA ENOG411DZ5I MED19A Q9FMP0 MD19A_ARATH Mediator of RNA polymerase II transcription subunit 19a FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 25697 Mediator of RNA polymerase II transcription subunit 19a mediator complex [GO:0016592]; transcription factor binding [GO:0008134]; positive regulation of transcription from RNA polymerase II promoter [GO:0045944]; transcription, DNA-templated [GO:0006351] locus:2177073; AT5G12230 Inherit from euNOG: Mediator of RNA polymerase II transcription subunit NA NA NA NA NA NA NA ENOG411DZ5H TCP14 Q93Z00 TCP14_ARATH Transcription factor TCP14 Freshly harvested seeds exhibit delayed germination; Germination sensitive to ABA and paclobutrazol (inhibitor of GA synthesis)-E. Nambara-2008 52300 Transcription factor TCP14 nucleus [GO:0005634]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; cell proliferation [GO:0008283]; inflorescence development [GO:0010229]; regulation of defense response [GO:0031347]; regulation of seed germination [GO:0010029]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to cytokinin [GO:0009735]; response to gibberellin [GO:0009739]; transcription, DNA-templated [GO:0006351] locus:2079202; AT3G47620 Transcription factor Os02g0747400 protein (Putative TCP-domain protein) (TCP transcription factor) Q6YUX6 Q6YUX6_ORYSJ TCP6 Os02g0747400 OSJNBa0078N11.17 OSJNBb0024K03.29 OSNPB_020747400 ENOG411DZ5K RHL1 O81242 RHL1_ARATH DNA-binding protein RHL1 (Protein ELONGATED HYPOCOTYL 7) (Protein ROOT HAIRLESS 1) DISRUPTION PHENOTYPE: Plants have no hairs on primary roots and have an extreme dwarf and seedling lethal phenotype. {ECO:0000269|PubMed:9649505}. Extreme dwarf in the dark and in the light. Reduced root hair number. Trichome size and branching is reduced. Ploidy defect. Complete loss of root hairs on primary root-L. Dolan-1998 FUNCTION: Component of the DNA topoisomerase VI complex involved in chromatin organization and progression of endoreduplication cycles. Binds to DNA. Required for endoreduplication beyond 8C. {ECO:0000269|PubMed:16339310}. 38904 DNA-binding protein RHL1 (Protein ELONGATED HYPOCOTYL 7) (Protein ROOT HAIRLESS 1) nucleolus [GO:0005730]; DNA binding [GO:0003677]; DNA endoreduplication [GO:0042023]; root hair initiation [GO:0048766] TISSUE SPECIFICITY: Expressed inproliferating and endoreduplicating cells. {ECO:0000269|PubMed:9649505}. locus:2007720; AT1G48380 DNA-binding protein Os07g0172200 protein (Putative root hairless 1),Os06g0730200 protein Q6ZA53,A0A0P0X1K3 Q6ZA53_ORYSJ,A0A0P0X1K3_ORYSJ P0496D04.23-1 Os07g0172200 OSNPB_070172200,Os06g0730200 OSNPB_060730200 ENOG411DZ5J GLYK Q944I4,C0Z2X8,A0A1P8AMB5,A0A1P8AMB3,F4HS63,A8MQE0 GLYK_ARATH,C0Z2X8_ARATH,A0A1P8AMB5_ARATH,A0A1P8AMB3_ARATH,F4HS63_ARATH,A8MQE0_ARATH D-glycerate 3-kinase, chloroplastic (AtGLYK) (EC 2.7.1.31),AT1G80380 protein (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein In ambient air the growth of the homozygote plant is arrested at early cotyledon stage. The seedlings die within 2 weeks. With elevated CO2 the plant grows slowly but is viable and fertile. Seedling lethal under ambient air; Dwarf under elevated CO2-H. Bauwe-2005 FUNCTION: Catalyzes the concluding reaction of the photorespiratory C2 cycle, an indispensable ancillary metabolic pathway to the photosynthetic C3 cycle that enables land plants to grow in an oxygen-containing atmosphere. {ECO:0000269|PubMed:15980259}.; FUNCTION: Isoform 3: Cytoplasmic D-glycerate 3-kinase that constitutes a photorespiratory bypass that alleviates fluctuating light-induced photoinhibition (PubMed:29129375). {ECO:0000269|PubMed:29129375}. PATHWAY: Photosynthesis; photorespiration; 3-phospho-D-glycerate from glycine: step 4/4. MetaCyc:AT1G80380-MONOMER; 2.7.1.31; 2.7.1.31 51018,36810,36342,44067,50260,40819 D-glycerate 3-kinase, chloroplastic (AtGLYK) (EC 2.7.1.31),AT1G80380 protein (p-loop containing nucleoside triphosphate hydrolases superfamily protein),p-loop containing nucleoside triphosphate hydrolases superfamily protein chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; ATP binding [GO:0005524]; glycerate kinase activity [GO:0008887]; uridine kinase activity [GO:0004849]; oxidative photosynthetic carbon pathway [GO:0009854]; photorespiration [GO:0009853]; pyrimidine nucleobase metabolic process [GO:0006206]; pyrimidine nucleoside salvage [GO:0043097],ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; kinase activity [GO:0016301],hydrolase activity [GO:0016787] locus:2034260; AT1G80380 D-glycerate 3-kinase Os01g0682500 protein (Phosphoribulokinase/uridine kinase-like) (cDNA clone:001-031-D08, full insert sequence) (cDNA clone:J013158I10, full insert sequence) Q5QLG3 Q5QLG3_ORYSJ Os01g0682500 OsJ_03028 OSNPB_010682500 P0019E03.36 P0445E10.1 ENOG411DZ5E GLY3 Q9C8L4,F4HRK0 ETHE1_ARATH,F4HRK0_ARATH Persulfide dioxygenase ETHE1 homolog, mitochondrial (EC 1.13.11.18) (Glyoxalase II) (Glx II) (Sulfur dioxygenase ETHE1),Glyoxalase II 3 DISRUPTION PHENOTYPE: Embryonic lethality at the early heart stage, due to defects in endosperm development. {ECO:0000269|PubMed:22786886}. Embryo defective; Transition-C. Makaroff-2007 FUNCTION: Sulfur dioxygenase that plays an essential role in hydrogen sulfide catabolism in the mitochondrial matrix. Hydrogen sulfide (H(2)S) gives rise to cysteine persulfide residues. ETHE1 consumes molecular oxygen to catalyze the oxidation of the persulfide, once it has been transferred to a thiophilic acceptor, such as glutathione (R-SSH). Plays an important role in metabolic homeostasis in mitochondria by metabolizing hydrogen sulfide and preventing the accumulation of supraphysiological H(2)S levels that have toxic effects, due to the inhibition of cytochrome c oxidase. Required for normal endosperm development in seed, and thereby also required for normal embryo development. {ECO:0000269|PubMed:22786886}. 1.13.11.18; 1.13.11.18 32332,32358 Persulfide dioxygenase ETHE1 homolog, mitochondrial (EC 1.13.11.18) (Glyoxalase II) (Glx II) (Sulfur dioxygenase ETHE1),Glyoxalase II 3 mitochondrion [GO:0005739]; hydrolase activity, acting on ester bonds [GO:0016788]; metal ion binding [GO:0046872]; sulfur dioxygenase activity [GO:0050313]; embryo development ending in seed dormancy [GO:0009793]; endosperm development [GO:0009960]; response to salt stress [GO:0009651]; seed development [GO:0048316] locus:2024922; AT1G53580 Hydroxyacylglutathione hydrolase Os01g0667200 protein (Putative glyoxalase II) (cDNA clone:001-038-F04, full insert sequence) (cDNA clone:006-202-B10, full insert sequence) (cDNA clone:J013127E08, full insert sequence) Q5QLQ5 Q5QLQ5_ORYSJ Os01g0667200 Os01g0667200 OSJNBb0063G05.15 OSNPB_010667200 ENOG411DZ5D Q9LVG9 Y5600_ARATH BTB/POZ domain-containing protein At5g60050 FUNCTION: May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 56939 BTB/POZ domain-containing protein At5g60050 protein ubiquitination [GO:0016567] locus:2164185; AT5G60050 BTB POZ domain-containing protein NA NA NA NA NA NA NA ENOG411DZ5G Q9FFU6 B561A_ARATH Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 (Protein b561A.tha1) FUNCTION: May act as a catecholamine-responsive trans-membrane electron transporter. {ECO:0000269|PubMed:15022831}. 100533 Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 (Protein b561A.tha1) endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]; metal ion binding [GO:0046872]; oxidation-reduction process [GO:0055114] locus:2160220; AT5G54830 Eukaryotic cytochrome b561 Os09g0557700 protein A3C1F1 A3C1F1_ORYSJ Os09g0557700 OsJ_30308 OSNPB_090557700 ENOG411DZ5F Q9LDH3 PT112_ARATH Probable sugar phosphate/phosphate translocator At1g12500 38925 Probable sugar phosphate/phosphate translocator At1g12500 integral component of membrane [GO:0016021]; carbohydrate transport [GO:0008643] locus:2034730; AT1G12500 phosphate phosphate translocator NA NA NA NA NA NA NA ENOG411DZ5A NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ZnF_C2H2 Os05g0444200 protein (Putative zinc finger protein),Os01g0859100 protein (cDNA clone:002-107-G07, full insert sequence) Q6F2N5,Q0JHK0 Q6F2N5_ORYSJ,Q0JHK0_ORYSJ Os05g0444200 OsJ_18716 OSJNBa0020H14.18 OSNPB_050444200,Os01g0859100 Os01g0859100 OSNPB_010859100 ENOG411DZ5C BAM8,BMY2 Q9FH80,A0A1P8BBC1 BAM8_ARATH,A0A1P8BBC1_ARATH Beta-amylase 8 (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 2),Beta-amylase (EC 3.2.1.2) 3.2.1.2 77160,79009 Beta-amylase 8 (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 2),Beta-amylase (EC 3.2.1.2) cytoplasm [GO:0005737]; nucleus [GO:0005634]; amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; polysaccharide catabolic process [GO:0000272]; regulation of shoot system development [GO:0048831],amylopectin maltohydrolase activity [GO:0102229]; beta-amylase activity [GO:0016161]; polysaccharide catabolic process [GO:0000272] locus:2158455; AT5G45300 beta-amylase Beta-amylase (EC 3.2.1.2) Q0E497 Q0E497_ORYSJ Os02g0129600 Os02g0129600 OSNPB_020129600 ENOG411DZ5B IMPL1 Q94F00 IMPL1_ARATH Phosphatase IMPL1, chloroplastic (EC 3.1.3.25) (Protein MYO-INOSITOL MONOPHOSPHATASE-LIKE 1) FUNCTION: Phosphatase acting preferentially on D-myoinositol 1-phosphate (D-Ins 1-P). {ECO:0000269|PubMed:19339506, ECO:0000269|PubMed:20960216}. PATHWAY: Polyol metabolism; myo-inositol biosynthesis; myo-inositol from D-glucose 6-phosphate: step 2/2. ARA:AT1G31190-MONOMER;MetaCyc:AT1G31190-MONOMER; 3.1.3.25; 3.1.3.25 40445 Phosphatase IMPL1, chloroplastic (EC 3.1.3.25) (Protein MYO-INOSITOL MONOPHOSPHATASE-LIKE 1) chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; inositol monophosphate 1-phosphatase activity [GO:0008934]; inositol monophosphate 3-phosphatase activity [GO:0052832]; inositol monophosphate 4-phosphatase activity [GO:0052833]; metal ion binding [GO:0046872]; inositol biosynthetic process [GO:0006021]; inositol metabolic process [GO:0006020]; inositol phosphate dephosphorylation [GO:0046855]; phosphatidylinositol phosphorylation [GO:0046854]; signal transduction [GO:0007165] DEVELOPMENTAL STAGE: Detected in globular to heart stage embryos. {ECO:0000269|PubMed:20960216}. TISSUE SPECIFICITY: Ubiquitous. Expressed in pistil and seed endosperm. {ECO:0000269|PubMed:20960216}. locus:2029524; AT1G31190 Phosphatase IMPL1 Inositol-1-monophosphatase (EC 3.1.3.25),Inositol-1-monophosphatase (EC 3.1.3.25) (Fragment) Q6H6B9,A0A0P0VFD2 Q6H6B9_ORYSJ,A0A0P0VFD2_ORYSJ Os02g0169900 Os02g0169900 OJ1116_A06.9 OsJ_05549 OSNPB_020169900 P0669G09.32,Os02g0169900 OSNPB_020169900 ENOG411E7AP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Late embryogenesis abundant (LEA) group 1 Os06g0324400 protein (cDNA clone:001-120-D12, full insert sequence) Q5Z771 Q5Z771_ORYSJ Os06g0324400 Os06g0324400 OsJ_21166 OSNPB_060324400 P0421H01.27 ENOG411E7AJ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os02g0702100 protein (cDNA clone:002-141-E07, full insert sequence) Q6ZHJ4 Q6ZHJ4_ORYSJ Os02g0702100 Os02g0702100 OJ1218_D07.7 OsJ_08061 OSNPB_020702100 ENOG411DQPT SKIP30 Q9M1W7 SKI30_ARATH F-box/kelch-repeat protein SKIP30 (SKP1-interacting partner 30) FUNCTION: Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. PATHWAY: Protein modification; protein ubiquitination. 38980 F-box/kelch-repeat protein SKIP30 (SKP1-interacting partner 30) protein ubiquitination [GO:0016567] locus:2077299; AT3G63220 F-box kelch-repeat protein Kelch motif family protein, expressed (Os10g0388200 protein) (cDNA clone:J013049C12, full insert sequence) Q338Q9 Q338Q9_ORYSJ Os10g0388200 LOC_Os10g24900 Os10g0388200 OSNPB_100388200 ENOG411E4VF MED30,MLE2.11 Q9FMV4,A0A1P8BH90 MED30_ARATH,A0A1P8BH90_ARATH Mediator of RNA polymerase II transcription subunit 30,Mediator of RNA polymerase II transcription subunit FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 19814,18595 Mediator of RNA polymerase II transcription subunit 30,Mediator of RNA polymerase II transcription subunit mediator complex [GO:0016592]; regulation of transcription, DNA-templated [GO:0006355]; transcription, DNA-templated [GO:0006351],mediator complex [GO:0016592] locus:2167321; AT5G63480 NA Os04g0388601 protein A0A0P0W9S2 A0A0P0W9S2_ORYSJ Os04g0388601 OSNPB_040388601 ENOG411E3MD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA MYB DNA-binding domain superfamily protein Os06g0605600 protein (Fragment),Os06g0605750 protein A0A0P0WYW1,A0A0P0WYS8 A0A0P0WYW1_ORYSJ,A0A0P0WYS8_ORYSJ Os06g0605600 OSNPB_060605600,Os06g0605750 OSNPB_060605750 ENOG411DQ9Q LIG1 Q42572,F4I1P7 DNLI1_ARATH,F4I1P7_ARATH DNA ligase 1 (AtLIG1) (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1),DNA ligase (EC 6.5.1.1) DISRUPTION PHENOTYPE: Lethal. {ECO:0000269|PubMed:19558640}. Null: Embryo defective; Knockdown: Dwarf; Short roots; Small leaves-C. West-2009 FUNCTION: Essential protein. DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Involved in repair of both single strand breaks (SSBs) and double strand breaks (DSBs). Required in the endosperm for embryogenesis, probably to repair DNA-breaks generated by DME. {ECO:0000269|PubMed:19558640, ECO:0000269|PubMed:20023162}. R-ATH-174414;R-ATH-5358565;R-ATH-5358606;R-ATH-5651801;R-ATH-6782210;R-ATH-69183; Mismatch repair (03430),Nucleotide excision repair (03420),DNA replication (03030),Base excision repair (03410) 6.5.1.1 87740,73485 DNA ligase 1 (AtLIG1) (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1),DNA ligase (EC 6.5.1.1) mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA ligase (ATP) activity [GO:0003910]; metal ion binding [GO:0046872]; cell cycle [GO:0007049]; cell division [GO:0051301]; DNA biosynthetic process [GO:0071897]; DNA demethylation [GO:0080111]; DNA ligation involved in DNA repair [GO:0051103]; DNA recombination [GO:0006310]; DNA replication [GO:0006260]; double-strand break repair [GO:0006302]; lagging strand elongation [GO:0006273]; single strand break repair [GO:0000012],mitochondrion [GO:0005739]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA ligase (ATP) activity [GO:0003910]; DNA biosynthetic process [GO:0071897]; DNA ligation involved in DNA repair [GO:0051103]; DNA recombination [GO:0006310]; lagging strand elongation [GO:0006273] DEVELOPMENTAL STAGE: In the mature male gametophyte, expressed in the vegetative cell as well as in the two sperm cells. In the mature female gametes, accumulates in the embryo sac; mostly expressed in the central cell nucleus and, at lower levels, in the egg cell and synergids. After fertilization, localized in the syncytial endosperm and in the embryo. {ECO:0000269|PubMed:20023162}. TISSUE SPECIFICITY: Expressed in all vegetative and reproductive tissues. {ECO:0000269|PubMed:20023162}. locus:2199953;,locus:2010207; AT1G08130,AT1G49250 DNA ligase DNA ligase (EC 6.5.1.1) Q0IWT4 Q0IWT4_ORYSJ Os10g0489200 OSNPB_100489200 ENOG411DUEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Os01g0729900 protein (cDNA clone:J013000C13, full insert sequence) (cDNA clone:J013026G23, full insert sequence) (cDNA clone:J013122L20, full insert sequence),Os05g0530300 protein (cDNA, clone: J065192E07, full insert sequence),Os01g0729900 protein (Fragment) Q5JNF5,Q75K61,A0A0P0V7R3 Q5JNF5_ORYSJ,Q75K61_ORYSJ,A0A0P0V7R3_ORYSJ Os01g0729900 OSNPB_010729900 P0435H01.17 P0456A01.34,Os05g0530300 OJ1131_E09.9 OSNPB_050530300,Os01g0729900 OSNPB_010729900 ENOG411E8AK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA VQ motif NA NA NA NA NA NA NA ENOG411E8AB B3H4L6 B3H4L6_ARATH Uncharacterized protein 8680 Uncharacterized protein locus:4515103590; AT5G19151 NA NA NA NA NA NA NA NA ENOG411E8AY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ENOG411DRRE GH9B12 O80497,O64889,Q8S8Q4,O64890,A0A1P8AYH8 GUN15_ARATH,GUN12_ARATH,GUN14_ARATH,GUN13_ARATH,A0A1P8AYH8_ARATH Endoglucanase 15 (EC 3.2.1.4) (Endo-1,4-beta glucanase 15),Endoglucanase 12 (EC 3.2.1.4) (Endo-1,4-beta glucanase 12),Endoglucanase 14 (EC 3.2.1.4) (Endo-1,4-beta glucanase 14),Endoglucanase 13 (EC 3.2.1.4) (Endo-1,4-beta glucanase 13),Glycosyl hydrolase 9B12 ARA:AT2G44570-MONOMER;,ARA:AT2G44540-MONOMER;,ARA:AT2G44560-MONOMER;,ARA:AT2G44550-MONOMER; 3.2.1.4 53591,53421,53198,53448,44875 Endoglucanase 15 (EC 3.2.1.4) (Endo-1,4-beta glucanase 15),Endoglucanase 12 (EC 3.2.1.4) (Endo-1,4-beta glucanase 12),Endoglucanase 14 (EC 3.2.1.4) (Endo-1,4-beta glucanase 14),Endoglucanase 13 (EC 3.2.1.4) (Endo-1,4-beta glucanase 13),Glycosyl hydrolase 9B12 extracellular region [GO:0005576]; cellulase activity [GO:0008810]; cell wall organization [GO:0071555]; cellulose catabolic process [GO:0030245],hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; carbohydrate metabolic process [GO:0005975] locus:2042461;,locus:2042376;,locus:2042451;,locus:2042441; AT2G44570,AT2G44540,AT2G44560,AT2G44550 glycosyl hydrolase Endoglucanase 14 (EC 3.2.1.4) (Endo-1,4-beta glucanase 14) P0C1U5 GUN14_ORYSJ Os05g0129200 LOC_Os05g03840 OsJ_016234 ENOG411E5WI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA ethylene-responsive transcription factor ERF098-like NA NA NA NA NA NA NA